BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780727|ref|YP_003065140.1| putative pilus assembly
protein [Candidatus Liberibacter asiaticus str. psy62]
         (474 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040404|gb|ACT57200.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 474

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/474 (100%), Positives = 474/474 (100%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL
Sbjct: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI
Sbjct: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS
Sbjct: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS
Sbjct: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS
Sbjct: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV
Sbjct: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK
Sbjct: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK
Sbjct: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474


>gi|315121891|ref|YP_004062380.1| putative pilus assembly protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495293|gb|ADR51892.1| putative pilus assembly protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 471

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/474 (69%), Positives = 390/474 (82%), Gaps = 3/474 (0%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M+  Q+T F +  IF+ SSN  +A+   +   NA+ I+I D  IG  KKI+IGL KV+IL
Sbjct: 1   MKNFQKTLFMLFVIFISSSNFLLAQSKLVDAKNASTIHIGDSAIGTSKKINIGLGKVVIL 60

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P  VQDVLVSDPTKADVVVHS +T+Y+FGK+VGQANVILIGHD KQ+LN+DI IERDI
Sbjct: 61  HLPSRVQDVLVSDPTKADVVVHSSKTVYIFGKSVGQANVILIGHDEKQLLNIDIFIERDI 120

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
            +LEMT RRF++ SNI VEM+SD +VLHG VRTIQDSQ AVELS  FLS    N Y  +S
Sbjct: 121 RNLEMTFRRFLSGSNIHVEMLSDNLVLHGEVRTIQDSQHAVELSNMFLSNERNNLYKTAS 180

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
             KV+NLLNI  EDQVTLKVTIAEVRRD+LKQIGFQH+I  SS GPSK    DF G    
Sbjct: 181 GSKVINLLNIGAEDQVTLKVTIAEVRRDVLKQIGFQHTI--SSGGPSKGKRIDFDGSLGG 238

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           +G DF++  +LDRF+F++VL+ALERATAIRTLAEPTLTAISGQ+A+F SGG  LY++V +
Sbjct: 239 QGADFAMTTILDRFTFKSVLNALERATAIRTLAEPTLTAISGQNATFRSGGTRLYRSVGA 298

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           + G +++T HDYGVVL FTPTVLSPGRIGLRI+TEVSEPV+GV+    P YR+RKADTTV
Sbjct: 299 N-GTSTITPHDYGVVLTFTPTVLSPGRIGLRIETEVSEPVLGVSTTGEPEYRMRKADTTV 357

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ELPSGGTIVLAGLLKDDIQQ + G+PLLSKIPILGALFR++ F+REETEIFI+ATPFLVK
Sbjct: 358 ELPSGGTIVLAGLLKDDIQQKRGGVPLLSKIPILGALFRSNSFSREETEIFISATPFLVK 417

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           PVAM +LSRPDD+Y +E+DAKAF FNRVNKIYGPKEA++  GQNYKGAIGFIYK
Sbjct: 418 PVAMNELSRPDDNYDIENDAKAFLFNRVNKIYGPKEAAQGNGQNYKGAIGFIYK 471


>gi|241207157|ref|YP_002978253.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240861047|gb|ACS58714.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 499

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/476 (48%), Positives = 315/476 (66%), Gaps = 28/476 (5%)

Query: 22  SVAKLPPIKEANA---AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           S A L    EA A   +++ IS       +++ +GLNK +++ +P D  D+LVSDPT AD
Sbjct: 29  SFAPLFGAGEARADSDSLVRISQTGSNAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMAD 88

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V  + R +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE+ LRRFI DSNI V
Sbjct: 89  AVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNLRRFIPDSNINV 148

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFL---SQSGRNQYANSS--------------S 181
           E+VSD +VL G VRT QD+ +A +L++ FL     + R + A+ +              S
Sbjct: 149 EIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDSSVALFAEGRQS 208

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAADFGGKF 238
            +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + ++ SS        S +AD     
Sbjct: 209 SQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQLGSPSADSAAST 268

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           V  G     K  + ++   T L+ALE+A  ++TLAEPTLTAISGQ+A+F SGGQ LY T 
Sbjct: 269 VGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATFNSGGQQLYST- 327

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           + S G  +V   +YG+ L F P VLS GRI L+I+T VSEPV G  +G+  +Y+ R A+T
Sbjct: 328 TDSDGNVTVVPFNYGISLAFKPVVLSSGRISLQIKTNVSEPVAG--SGNA-TYQRRSAET 384

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +VELPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR   F R+ETE+ I ATP+L
Sbjct: 385 SVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATPYL 444

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           V+PVA   L+RPDD++S E+D   FF NRVNK+YG +EA   + Q + G+IGFIYK
Sbjct: 445 VRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGFIYK 499


>gi|116249981|ref|YP_765819.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254629|emb|CAK05703.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 501

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/476 (48%), Positives = 315/476 (66%), Gaps = 28/476 (5%)

Query: 22  SVAKLPPIKEANA---AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           S A L    EA A   +++ IS       +++ +GLNK +++ +P D  D+LVSDPT AD
Sbjct: 31  SFATLFAAGEARADSDSLVRISQTGSNAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMAD 90

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V  + R +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE+ LRRFI DSNI V
Sbjct: 91  AVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNLRRFIRDSNINV 150

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFL---SQSGRNQYANSS--------------S 181
           E+VSD +VL G VRT QD+ +A +L++ FL     + R + A+ +              S
Sbjct: 151 EIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDSSVALFAEGRQS 210

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAADFGGKF 238
            +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + ++ SS        S +AD     
Sbjct: 211 SQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQLGSPSADSATAT 270

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           V  G     K  + ++   T L+ALE+A  ++TLAEPTLTAISGQ+A+F SGGQ LY T 
Sbjct: 271 VGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATFNSGGQQLYST- 329

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           + S G  +V   +YG+ L F P VLS GRI L+I+T VSEPV G  +G+  +Y+ R A+T
Sbjct: 330 TDSDGNVTVVPFNYGINLAFKPVVLSSGRISLQIKTNVSEPVAG--SGNA-TYQRRSAET 386

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +VELPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR   F R+ETE+ I ATP+L
Sbjct: 387 SVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATPYL 446

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           V+PVA   L+RPDD++S E+D   FF NRVNK+YG +EA   + Q + G+IGFIYK
Sbjct: 447 VRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGFIYK 501


>gi|86355864|ref|YP_467756.1| pilus assembly secretion protein [Rhizobium etli CFN 42]
 gi|86279966|gb|ABC89029.1| pilus assembly secretion protein [Rhizobium etli CFN 42]
          Length = 498

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/473 (47%), Positives = 312/473 (65%), Gaps = 37/473 (7%)

Query: 29  IKEANAA--VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
           + EA AA  ++ IS       +++ +GLNK +++ +P D  D+LVSDPT AD V  + R 
Sbjct: 36  VNEARAAESLVRISQTGPDAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMADAVTRTSRR 95

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
           +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE  LRRFI DSNI+VE+VSD +V
Sbjct: 96  IYLFGKKVGQTNIFVFGAGGQEVVNLDIEIERDVSGLETNLRRFIPDSNIKVEIVSDNIV 155

Query: 147 LHGMVRTIQDSQRAVELSETFL---SQSGRNQYANSS--------------SKKVMNLLN 189
           L G VRT QD+ +A +L++ FL     + R + A+ +              + +V+NLL 
Sbjct: 156 LTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDSSVALFAEGRQTSQVVNLLQ 215

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFGGKFVSE 241
           I GEDQVTLKVTI EVRR++LKQ+GF + ++ SS        S  + S  A  GG   + 
Sbjct: 216 IQGEDQVTLKVTITEVRREVLKQLGFDNLVSNSSGMTVAQLGSPNADSATATVGGGLAA- 274

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                 K  + ++   T L+ALE+A  +RTLAEPTLTAISGQ+A+F SGGQ LY T + +
Sbjct: 275 ----LFKSSIGKYDISTYLNALEQAKVVRTLAEPTLTAISGQAATFNSGGQQLYST-TDN 329

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            G  +V   +YG+ L F P VLS GRI L I+T VSEPV G  +G+  +Y+ R A+T+VE
Sbjct: 330 NGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAG--SGNA-TYQRRSAETSVE 386

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           LPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR   F R+ETE+ I ATP+LV+P
Sbjct: 387 LPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATPYLVRP 446

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           VA   L+RPDD++S E+D   FF NRVNK+YG +EA   + Q + G+IGFIYK
Sbjct: 447 VARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGFIYK 498


>gi|209551759|ref|YP_002283676.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209537515|gb|ACI57450.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 499

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/447 (49%), Positives = 301/447 (67%), Gaps = 25/447 (5%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           +++ +GLNK +++ +P D  D+LVSDPT AD V  + R +YLFGK VGQ N+ + G  G+
Sbjct: 58  RRLKLGLNKAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQ 117

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           +++NLDI IERD++ LE+ L RFI DSNI VE+VSD +VL G VRT QD+ +A +L++ F
Sbjct: 118 EIVNLDIEIERDVSGLEVNLHRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVF 177

Query: 168 L---SQSGRNQYANSS--------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           L     + R + A+ +              + +V+NLL I GEDQVTLKVTIAEVRR++L
Sbjct: 178 LKGGEATTRTETASGTGGDSSVALFAEGRQTSQVVNLLQIEGEDQVTLKVTIAEVRREVL 237

Query: 211 KQIGFQHSITGSSS---GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           KQ+GF + ++ SS        S +AD     V  G     K  + ++   T L+ALE+A 
Sbjct: 238 KQLGFDNLVSNSSGMTVAQLGSPSADSATSVVGGGLAALFKSSIGKYDISTYLNALEQAK 297

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
            ++TLAEPTLTAISGQ+A+F SGGQ LY T + S G  +V   +YG+ L F P VLS GR
Sbjct: 298 VVKTLAEPTLTAISGQAATFNSGGQQLYST-TDSNGNVTVVPFNYGINLAFKPVVLSSGR 356

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I L+I+T VSEPV G +     +Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P 
Sbjct: 357 ISLQIKTNVSEPVAGSSGA---TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPG 413

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           +SKIP+LG LFR   F R+ETE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NR
Sbjct: 414 VSKIPLLGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNR 473

Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIYK 474
           VNK+YG +EA   + Q + G+IGFIYK
Sbjct: 474 VNKVYGRREAPVADAQ-FHGSIGFIYK 499


>gi|190889881|ref|YP_001976423.1| pilus assembly secretion protein [Rhizobium etli CIAT 652]
 gi|190695160|gb|ACE89245.1| pilus assembly secretion protein [Rhizobium etli CIAT 652]
 gi|327194694|gb|EGE61540.1| pilus assembly secretion protein [Rhizobium etli CNPAF512]
          Length = 499

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/447 (49%), Positives = 301/447 (67%), Gaps = 25/447 (5%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           +++ +GLNK +++ +P D  D+LVSDP+ AD V  + R +YLFGK VGQ N+ + G  G+
Sbjct: 58  RRLKLGLNKAVVVDLPEDAHDILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQ 117

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           +++NLDI IERD++ LE  LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ F
Sbjct: 118 EIINLDIEIERDVSGLEANLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVF 177

Query: 168 L---SQSGRNQYANSS--------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           L     + R + A+ +              + +V+NLL I GEDQVTLKVTIAEVRR++L
Sbjct: 178 LKGGEATTRTETASGTGGDSAVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVL 237

Query: 211 KQIGFQHSITGSSSGPSKSF---AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           KQ+GF + I+ SS          +AD     V  G     K  + ++   T L+ALE+A 
Sbjct: 238 KQLGFDNLISNSSGMTVAQLGTPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAK 297

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
            +RTLAEPTLTAISGQ+A+F SGGQ LY T + + G  +V   +YG+ L F P VLS GR
Sbjct: 298 VVRTLAEPTLTAISGQAATFNSGGQQLYST-TDNDGNVTVVPFNYGINLAFKPVVLSSGR 356

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I L I+T VSEPV G  +G+  +Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P 
Sbjct: 357 ISLEIKTNVSEPVAG--SGNA-TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPG 413

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           +SKIP+LG LFR   F R+ETE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NR
Sbjct: 414 VSKIPLLGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNR 473

Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIYK 474
           VNK+YG +EA   + Q + G+IGFIYK
Sbjct: 474 VNKVYGRREAPVADAQ-FHGSIGFIYK 499


>gi|222084469|ref|YP_002542998.1| pilus assembly secretion protein [Agrobacterium radiobacter K84]
 gi|221721917|gb|ACM25073.1| pilus assembly secretion protein [Agrobacterium radiobacter K84]
          Length = 505

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/448 (48%), Positives = 300/448 (66%), Gaps = 26/448 (5%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + + +GLNK +++ +P D  D+LVSDP  AD V  + R +YLFGK VGQ N+ + G +G+
Sbjct: 63  RTLKLGLNKALVVDLPADAHDILVSDPKMADAVTRTSRRIYLFGKTVGQTNIFVFGANGQ 122

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           ++++LD+ IERDI+ L+  L+RFI DS+I VE+VSD +VL G VRT QDS RA +L+  F
Sbjct: 123 EIVSLDLQIERDISGLQANLKRFIPDSDINVEIVSDNIVLTGSVRTPQDSSRAQQLAGAF 182

Query: 168 L---SQSGRNQYANSS--------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           L     + R + A+ +              + +++NLL I GEDQVTLKVT+AEV+R +L
Sbjct: 183 LKGGEATTRTETASGTGGDSSVALFAEGRQTSQIVNLLQIEGEDQVTLKVTVAEVKRSVL 242

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV----KGVLDRFSFETVLHALERA 266
           KQIGF + ++ +SSG + +   +      +  G+  +    K  L +++  + L+A+E+A
Sbjct: 243 KQIGFDNLVS-NSSGLTVAQLGNISSDSTAATGNGGLSALFKTALGKYNVSSYLNAMEQA 301

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
            A+RTLAEPTLTAISGQ+A+F SGGQ LY  + S  G  ++T + YG+ L FTP VLS G
Sbjct: 302 GAVRTLAEPTLTAISGQAATFNSGGQTLYSVIDSD-GNVTITPYTYGISLAFTPVVLSAG 360

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           RI L +QT+VSEP     A    +Y  R ADT+VELPSGG+I LAGLL D++QQ   G P
Sbjct: 361 RISLHVQTQVSEPTGTTGAA---TYNRRAADTSVELPSGGSIALAGLLSDNVQQSTTGTP 417

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
             SKIPILGALFR   F R+E+E+ I ATP+LV+PVA   ++RPDD++S  +DA  FF N
Sbjct: 418 GASKIPILGALFRQKTFQRDESELVIIATPYLVRPVARNQIARPDDNFSPTNDAGVFFMN 477

Query: 447 RVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           RVNKIYG K+A  V   ++ G +GFIYK
Sbjct: 478 RVNKIYGRKDAPPVADADFHGTVGFIYK 505


>gi|218516388|ref|ZP_03513228.1| pilus assembly secretion protein [Rhizobium etli 8C-3]
          Length = 436

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/441 (49%), Positives = 296/441 (67%), Gaps = 25/441 (5%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           +NK +++ +P D  D+LVSDP+ AD V  + R +YLFGK VGQ N+ + G  G++++NLD
Sbjct: 1   MNKAVVVDLPEDAHDILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLD 60

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL---SQ 170
           I IERD++ LE  LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL     
Sbjct: 61  IEIERDVSGLEANLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEA 120

Query: 171 SGRNQYANSS--------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           + R + A+ +              + +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF 
Sbjct: 121 TTRTETASGTGGDSAVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFD 180

Query: 217 HSITGSSSGPSKSF---AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           + I+ SS          +AD     V  G     K  + ++   T L+ALE+A  +RTLA
Sbjct: 181 NLISNSSGMTVAQLGTPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLA 240

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           EPTLTAISGQ+A+F SGGQ LY T + + G  +V   +YG+ L F P VLS GRI L I+
Sbjct: 241 EPTLTAISGQAATFNSGGQQLYST-TDNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIK 299

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           T VSEPV G  +G+  +Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKIP+
Sbjct: 300 TNVSEPVAG--SGNA-TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPL 356

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG LFR   F R+ETE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+YG
Sbjct: 357 LGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYG 416

Query: 454 PKEASEVEGQNYKGAIGFIYK 474
            +EA   + Q + G+IGFIYK
Sbjct: 417 RREAPVADAQ-FHGSIGFIYK 436


>gi|218680971|ref|ZP_03528868.1| putative pilus assembly protein [Rhizobium etli CIAT 894]
          Length = 434

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/438 (49%), Positives = 297/438 (67%), Gaps = 25/438 (5%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           +GLNK +++ +P D  D+LVSDPT AD V  + R +YLFGK VGQ N+ + G  G++++N
Sbjct: 2   LGLNKAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVN 61

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--- 168
           LDI IERD++ LE+ LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL   
Sbjct: 62  LDIEIERDVSGLEVNLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGG 121

Query: 169 SQSGRNQYANSS--------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
             + R + A+ +              + +V+NLL I GEDQVTLKVTIAEVRR++LKQ+G
Sbjct: 122 EATTRTETASGTGGDSSVALFAEGRQASQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLG 181

Query: 215 FQHSITGSSS---GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           F + ++ SS        S +AD     V  G     K  + ++   T L+ALE+A  ++T
Sbjct: 182 FDNLVSNSSGMTVAQLGSPSADSATSTVGGGLAALFKSTIGKYDISTYLNALEQAKVVKT 241

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEPTLTAISGQ+A+F SGGQ LY T + S G  +VT  +YG+ L F P VLS GRI L+
Sbjct: 242 LAEPTLTAISGQAATFNSGGQQLYST-TDSDGNVTVTPFNYGINLAFKPVVLSSGRISLQ 300

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           I+T VSEPV G  +G+  +Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKI
Sbjct: 301 IKTNVSEPVAG--SGNA-TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKI 357

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P+LG LFR   F R+ETE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+
Sbjct: 358 PLLGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKV 417

Query: 452 YGPKEASEVEGQNYKGAI 469
           YG +EA   + Q + G+I
Sbjct: 418 YGRREAPVADAQ-FHGSI 434


>gi|325291659|ref|YP_004277523.1| component of type IV pilus [Agrobacterium sp. H13-3]
 gi|325059512|gb|ADY63203.1| component of type IV pilus [Agrobacterium sp. H13-3]
          Length = 527

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/499 (44%), Positives = 322/499 (64%), Gaps = 51/499 (10%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +P+  ++   +  +A+++ I++   G  K++ +GLNK +++ +P D  D+LV+DP+ AD 
Sbjct: 36  SPAFLRISEAEAQSASIVRITESGSGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADA 95

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
           V  + + +YLFGK VGQ N+ + G  G+++++LD+ +ERDI+ LE  +RRFI +S+I+VE
Sbjct: 96  VTRTSKRIYLFGKTVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVE 155

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFL----------SQSGRNQYA-------NSSSK 182
           +VSD +VL G VRT QDS RAV+L+E FL          S +G N          N  + 
Sbjct: 156 IVSDNIVLTGSVRTPQDSARAVQLAEAFLKGGEATTRNISLTGGNNGGDAAIFAENRQTS 215

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------SGPSKSFAADFG 235
           +++N+L I GEDQVTLKVT+AEV R +LKQ+GF  SI+ S+       S PS    A  G
Sbjct: 216 QIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGSISSSTSNNGFEFSNPSNLGNAISG 275

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              ++ G   S  G L+   F + L+A+E+A  +RTLAEP+LTAISG+ A F  GG    
Sbjct: 276 ASRIASGAIGS--GSLN---FASYLNAMEQAGVVRTLAEPSLTAISGEQAKFYVGGDFRL 330

Query: 296 K-----TVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VI 341
                 T+   TG  ++T    T DYG+ L+F P VLSPGRI L+I+T VSEP     V+
Sbjct: 331 PAEQEVTIDKDTGQPTITRTTNTVDYGITLNFRPVVLSPGRISLKIETNVSEPTYEGNVV 390

Query: 342 GVNAG-DMP-----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             NAG  +P     S R R+  TTVELPSGG+IV+AGL++D+I+Q   G+P +SK+PI G
Sbjct: 391 TGNAGRTIPGSTYMSIRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGISKVPIFG 450

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
            LFR+  F R ETE+ I ATP+LV+PVA   ++RPDD+++ E+DA  +F NRVNK+YG K
Sbjct: 451 TLFRSKDFIRNETELVIIATPYLVRPVARNQIARPDDNFNPENDAAMYFMNRVNKVYGRK 510

Query: 456 EASEVEGQNYKGAIGFIYK 474
           +  +V+   Y+G++GFIYK
Sbjct: 511 D--QVQAAPYQGSVGFIYK 527


>gi|15887573|ref|NP_353254.1| component of type IV pilus [Agrobacterium tumefaciens str. C58]
 gi|15155110|gb|AAK86039.1| component of type IV pilus [Agrobacterium tumefaciens str. C58]
          Length = 527

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/496 (43%), Positives = 317/496 (63%), Gaps = 45/496 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +P   +    +  +A+++ I++   G  K++ +GLNK +++ +P D  D+LV+DP+ AD 
Sbjct: 36  SPDFLRTSEAEAQSASIVRITESGTGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADA 95

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
           V  + R +YLFGK VGQ N+ + G  G+++++LD+ +ERDI+ LE  +RRFI +S+I+VE
Sbjct: 96  VTRTSRRIYLFGKMVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVE 155

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFL----------SQSGRNQYANSS-------SK 182
           +VSD +VL G VRT QDS RAV+L++ FL          S +G N   +++         
Sbjct: 156 IVSDNIVLTGSVRTPQDSARAVQLADAFLKGGEATTRNISLTGGNNGGDAAIFAERRQVS 215

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA--ADFGGKFVS 240
           +++N+L I GEDQVTLKVT+AEV R +LKQ+GF  SI+ S+SG    FA  ++ G     
Sbjct: 216 QIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGSISSSTSGNGFEFANPSNLGNAI-- 273

Query: 241 EGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297
           +G      G +   S  F + L+A+E+A  +RTLAEP+LTAISG+ A F  GG       
Sbjct: 274 DGASRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSLTAISGEQAKFYVGGDFRLAAE 333

Query: 298 ----VSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGV 343
               +   TG  ++T    T DYG+ L+F P VLSPGRI L+I+T VSEP      V G 
Sbjct: 334 QEVDIDKETGRPTITRTTNTVDYGITLNFKPVVLSPGRISLKIETNVSEPTYEGNVVTGN 393

Query: 344 NAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
               +P     S R R+  TTVELPSGG+IV+AGL++D+++Q   G+P +SKIPI G LF
Sbjct: 394 GGRTIPGSTYMSVRKRETSTTVELPSGGSIVIAGLVQDNVRQAMSGLPGMSKIPIFGTLF 453

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           R+  F R ETE+ I ATP+LV+PVA   ++RPDD+++ E+DA  +F NRVNK+YG K+  
Sbjct: 454 RSKEFLRNETELVIIATPYLVRPVARNQIARPDDNFNPENDAAMYFMNRVNKVYGRKD-- 511

Query: 459 EVEGQNYKGAIGFIYK 474
           +V+   Y+G++GFIYK
Sbjct: 512 QVQAAPYQGSVGFIYK 527


>gi|222147182|ref|YP_002548139.1| component of type IV pilus [Agrobacterium vitis S4]
 gi|221734172|gb|ACM35135.1| component of type IV pilus [Agrobacterium vitis S4]
          Length = 525

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/522 (43%), Positives = 315/522 (60%), Gaps = 51/522 (9%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPP----IKEANA------AVINISDVEIGKGKKI 50
           MR      F MM     S   S++ LP     +  A+A      +++ I+    G  + +
Sbjct: 7   MRLSSARLFRMMITGSLSLGLSISGLPGENMLVWRADALAAGAQSLVRIAQTGPGVRRDL 66

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
            +GLNK I++ +P D  D+LV+DP  AD V  + R +YLFGK VGQ N+ + G DG++++
Sbjct: 67  KLGLNKAIVVDLPEDAHDILVADPELADAVTRTSRRIYLFGKKVGQTNIFIFGADGREIV 126

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL-- 168
           +LD+ IERDI  L+  L RFI +SNI+VE++SD VVL G VRT QDS RAV L++ FL  
Sbjct: 127 SLDLQIERDIEGLQTNLSRFIPESNIKVEIISDNVVLSGTVRTPQDSSRAVSLAKAFLQG 186

Query: 169 ---SQSGRNQYANSS-------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
              +  G    +NSS             + +++N+L I GEDQVTLKVT+AEV R +LKQ
Sbjct: 187 GEATTRGETATSNSSGDGAVAIYAEDRQTSQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQ 246

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           +G   S T  +SG S +  ++ G   V  GG  ++      F     ++A+E+A  +RTL
Sbjct: 247 LGVSASATDGTSGISYANPSNLGNS-VDVGGTATISKTFGSFGISAYVNAMEQAGVMRTL 305

Query: 273 AEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSV----TTHDYGVVLHFTPTVL 323
           AEP+LTAISG+ A F  GG++        +  S+TG  +V    +T DYG+ L+F P VL
Sbjct: 306 AEPSLTAISGEQAKFYVGGEYRLAAGQEISTDSTTGQKTVSRTTSTVDYGIQLNFRPVVL 365

Query: 324 SPGRIGLRIQTEVSEP------VIGVNAGDMP-----SYRVRKADTTVELPSGGTIVLAG 372
           SPGRI L I+T VSEP      V G +   +P     S R R+A TTVELPSGG+IV+AG
Sbjct: 366 SPGRISLAIETNVSEPTYEGSVVEGNSDSSIPGSTYLSIRKREASTTVELPSGGSIVIAG 425

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L++D+++Q   G+P +SKIPI G LFR+  F R ETE+ I ATP+LV+PV    L+RPDD
Sbjct: 426 LVQDNVRQAMSGLPGISKIPIFGTLFRSKDFVRNETELVIIATPYLVRPVTRNALARPDD 485

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +++   D   +F NRVNK+YG KEA+      Y G +G+IYK
Sbjct: 486 NFNPAGDGAMYFLNRVNKVYGRKEAT--ANGAYHGTVGYIYK 525


>gi|15963894|ref|NP_384247.1| putative pilus assembly transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|307315791|ref|ZP_07595305.1| type II and III secretion system protein [Sinorhizobium meliloti
           BL225C]
 gi|307320426|ref|ZP_07599843.1| type II and III secretion system protein [Sinorhizobium meliloti
           AK83]
 gi|15073069|emb|CAC41528.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|306893992|gb|EFN24761.1| type II and III secretion system protein [Sinorhizobium meliloti
           AK83]
 gi|306898559|gb|EFN29232.1| type II and III secretion system protein [Sinorhizobium meliloti
           BL225C]
          Length = 511

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/498 (43%), Positives = 315/498 (63%), Gaps = 37/498 (7%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           +S  L  S  ++  LP  + A+++V+ I D   G  K I++GLNK +++ +P D  D+LV
Sbjct: 16  LSFCLTFSGMALPTLPAAEAASSSVVRIVDSGPGARKTINLGLNKAVVVDLPSDAHDILV 75

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           +DP+ AD +  + R +YLFGK+VGQ N+ + G  G+++++L++ +ERD+A LE  LRRFI
Sbjct: 76  ADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVAGLEANLRRFI 135

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL----------SQSGRNQYA---- 177
            D++I VE++SD VVL G VRT  DS RAV+L+  FL          +  G N  A    
Sbjct: 136 PDADINVEIISDNVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQGNNGDADIFA 195

Query: 178 -NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
            +  + +++NLL I G+DQVTLKVT+AEV R +LKQ+GF   ++   SG S    A+  G
Sbjct: 196 EDRQNSQIVNLLTIEGDDQVTLKVTVAEVSRQVLKQLGFNGRVSDGESGISFRNPANL-G 254

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             ++ G +  +KG +   +  + ++A+E+A  +RTLAEP+LTAISGQ A F  GG+    
Sbjct: 255 DAIAVGTNALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAISGQEAKFYVGGEFRLA 314

Query: 297 TVSS-----STGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VI 341
            V        TG T+V       +YG+ L+F P VL PGRI L+I+T+VSEP      V 
Sbjct: 315 GVQEVSTDDETGQTTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVSEPTYEGSVVT 374

Query: 342 GVNAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           G +   +P       R R+A T+VELPSGG+IV+AGL++D+I+Q   G+P  SKIPILG 
Sbjct: 375 GNSMTAIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLPGASKIPILGT 434

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           LFR+  F R ETE+ I ATP+LV+PVA   +SRPDD+++  +D ++FF  RVN+IYG  E
Sbjct: 435 LFRSKDFQRSETELVIIATPYLVRPVARSAISRPDDNFNPANDLESFFLGRVNRIYGRPE 494

Query: 457 ASEVEGQNYKGAIGFIYK 474
           A    G+ Y G +GFIYK
Sbjct: 495 AQPPAGR-YHGNVGFIYK 511


>gi|241518288|ref|YP_002978916.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240862701|gb|ACS60365.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 512

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/463 (44%), Positives = 290/463 (62%), Gaps = 31/463 (6%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           VI++++  +   + +SIGLNK +I+++P D  D++VSDP  +D +V + RT++LFGK VG
Sbjct: 57  VISVTETGVNVTRHVSIGLNKTLIVELPQDAHDIVVSDPGVSDAIVRATRTIFLFGKKVG 116

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           Q N+ ++  + + ++N+DI +ERDIA LE  LRR I D+ I+VE++SD +VL G VR+ Q
Sbjct: 117 QTNIFILDANKRPIVNIDIAVERDIAGLETDLRRLIPDAAIKVEIISDNIVLTGTVRSAQ 176

Query: 156 DSQRAVELSETFLSQSGRNQYA-----------------NSSSKKVMNLLNIAGEDQVTL 198
           DS +A +L+  F+                          +    K++NLL IA +DQV L
Sbjct: 177 DSAQAADLASAFVKGGEATTRTQSASSGGSQGSVALVAEDRQESKIINLLRIAADDQVML 236

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSV--KGVL 251
           K+TIAEV+R+ILKQ+GF + +  +      S  A  G         + GG  S    G  
Sbjct: 237 KMTIAEVKREILKQLGFDNELKNAGG----STIAQLGTASTDATTATSGGGLSALFSGSF 292

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
            +    T L+ALE+A  +RTLAEPTLTA+SGQSASF +GG+ LY   +   G T+ T + 
Sbjct: 293 GKHGLSTTLNALEQAKVVRTLAEPTLTAVSGQSASFQAGGEVLYSN-TDRDGNTTQTPYS 351

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           YG+ L F P VL+ GRI L+I TEVSEPV  + +G  P+Y  R   TTVELPSGG+I LA
Sbjct: 352 YGISLSFKPIVLTSGRISLQISTEVSEPVTSI-SGSSPTYGKRSTSTTVELPSGGSIALA 410

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL++D+  +   G P+L+KIP  GALFR + F R ETE+ I ATP+LV+PVA +DL+RPD
Sbjct: 411 GLIRDNFNRTSNGTPVLNKIPGFGALFRQTSFERNETELVIIATPYLVRPVAAKDLNRPD 470

Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           D+ S  DDA     +R+NK+YG  +  E   Q Y G +GFIYK
Sbjct: 471 DNLSPADDASQGLLDRINKLYGNGKTLEPTAQ-YHGTVGFIYK 512


>gi|163757627|ref|ZP_02164716.1| putative pilus assembly transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162285129|gb|EDQ35411.1| putative pilus assembly transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 496

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/473 (46%), Positives = 300/473 (63%), Gaps = 25/473 (5%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +P+  +L    +A+  +I I     G  K++ +GLNK I++ +P D  D+LV+DP  AD 
Sbjct: 31  DPTTGRLATPAQASQNIIKIKKSGPGVSKRVKLGLNKAIVVDLPTDAHDILVADPALADA 90

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
           V  + R +YLFGK VGQ N+ + G +G++++ +++ IERD+A LE+ L RF+ DSNI+VE
Sbjct: 91  VTRTSRRLYLFGKTVGQTNIFVFGPNGEEIIAIELEIERDVAGLEVHLARFLPDSNIQVE 150

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFL------------SQSGRNQYANSSSK---KV 184
           ++SD +VL G VRT QD+ +A  L+E FL            +  G +   N+  +   K+
Sbjct: 151 IISDNIVLTGSVRTPQDASQAARLAEIFLTGGEATTRVTTATSEGGDAAINAEDRQKSKI 210

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGPSKSFAADFGGKFVSE 241
           +NLL I GEDQVTLKVTIAEV R +LKQ+GF  +I+G   SS G S S      G   S 
Sbjct: 211 VNLLKIDGEDQVTLKVTIAEVSRQVLKQLGFNTTISGDGSSSFGNSPSPWLSVPG-LASV 269

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G   SV G +        + ALERA  IRTLAEP+LTAISG+ A F+ GG    ++    
Sbjct: 270 G---SVAGTISGARISADISALERAGVIRTLAEPSLTAISGEVARFSVGGSFEIESERDE 326

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            G T     +YG+ L FTP VL+PGRI LRI+TEVSEP        +PS + R+A+T+VE
Sbjct: 327 DG-TIFEEKEYGIKLEFTPVVLAPGRISLRIKTEVSEPTF-EGQSPLPSIQKREAETSVE 384

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           LPSGG++VLAGL++D  +Q   G+P  SKIP+LG+LFR+  F R ETE+ I ATP+LVKP
Sbjct: 385 LPSGGSMVLAGLVRDSYRQTISGMPGASKIPVLGSLFRSKEFLRNETELVIIATPYLVKP 444

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           VA  +LSRPDD+++   D   FF  RVN++YG  E     G+ Y GA+GFIYK
Sbjct: 445 VARNELSRPDDNFNAPSDGAGFFLGRVNRVYGQMETGLPAGR-YHGAVGFIYK 496


>gi|227823971|ref|YP_002827944.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium
           fredii NGR234]
 gi|227342973|gb|ACP27191.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium
           fredii NGR234]
          Length = 515

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/518 (43%), Positives = 319/518 (61%), Gaps = 47/518 (9%)

Query: 1   MRYLQRTFFTMMSIFL-FSSNPSVAKLPPIKEANAA---VINISDVEIGKGKKISIGLNK 56
           M+    TF T ++  L FS   S   LP +  A AA   V+ I +   G  +K+++GLNK
Sbjct: 1   MKRSGNTFRTCLAAGLSFSLTFSGLMLPAVPTAQAAASSVVRIVESGPGVKRKVNLGLNK 60

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
            +++ +P D  D+LV+DP  AD V  + R +YLFGK VGQ N+ + G +G+++++L++ +
Sbjct: 61  AVVVDLPTDAHDILVADPVLADAVTRTSRRIYLFGKTVGQTNIFVFGPNGEEIVSLEVAV 120

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG---- 172
           ERD+A LE  LRRFI +++I VE++SD VVL G VRT  DS +AV+L+  FL Q G    
Sbjct: 121 ERDVAGLEANLRRFIPEADINVEIISDNVVLTGTVRTPLDSTKAVDLARAFL-QGGEATT 179

Query: 173 RNQYANSS------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           RN  A  +            + +++NLL + GEDQVTLKVT+AEV R +LKQ+GF   I+
Sbjct: 180 RNITAQGTNGDADIFAEERQTSQIVNLLTVEGEDQVTLKVTVAEVSRQVLKQLGFNGRIS 239

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
              SG S    A+  G  +  G +  +KG +   +  + ++A+E+A  +RTLAEP+LTAI
Sbjct: 240 DGESGLSFRNPANL-GDAIGVGANALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAI 298

Query: 281 SGQSASFTSGG-------QHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGR 327
           SGQ A F  GG       Q +      +TG +       V   +YG+ L+F P VL  GR
Sbjct: 299 SGQEAKFYVGGEFRLAGVQEITTEEDEATGESVPVVEREVEDAEYGIRLNFKPVVLGAGR 358

Query: 328 IGLRIQTEVSEP------VIGVNAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKD 376
           I L I+TEVSEP      V G +  D+P       R R+A T+VELPSGG+IV+AGL++D
Sbjct: 359 ISLAIETEVSEPTYEGSVVTGNSFRDIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQD 418

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           +I+Q   G+P  SKIPILG LFR+  F R E+E+ I ATP+LV+PVA   LSRPDD+++ 
Sbjct: 419 NIRQAMSGLPGASKIPILGTLFRSKDFQRNESELVIIATPYLVRPVARSALSRPDDNFNP 478

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            +D ++FF  RVN+IYG  EA+   G+ Y G +GFIYK
Sbjct: 479 ANDLESFFVGRVNRIYGRPEAAPPVGR-YHGNVGFIYK 515


>gi|150398541|ref|YP_001329008.1| type II and III secretion system protein [Sinorhizobium medicae
           WSM419]
 gi|150030056|gb|ABR62173.1| type II and III secretion system protein [Sinorhizobium medicae
           WSM419]
          Length = 524

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/474 (44%), Positives = 302/474 (63%), Gaps = 37/474 (7%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+ I +   G  K I++GLNK +++ +P D  D+LV+DP+ AD +  + R +YLFGK+VG
Sbjct: 53  VVRIVNSGPGARKTINLGLNKAVVVDLPSDAHDILVADPSLADAITRTSRRIYLFGKSVG 112

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           Q N+ + G  G+++++L++ +ERD+A LE  LRRFI D++I+VE++SD VVL G VRT  
Sbjct: 113 QTNIFVFGPGGEEIVSLEVAVERDVAGLESNLRRFIPDADIKVEIISDNVVLTGTVRTPL 172

Query: 156 DSQRAVELSETFL----------SQSGRNQYA-----NSSSKKVMNLLNIAGEDQVTLKV 200
           DS RAV+L+  FL          +  G N  A     +  S +++NLL I G+DQVTLKV
Sbjct: 173 DSTRAVDLARAFLKGGEATTRNITAQGNNGDADIFAEDRQSSQIVNLLTIEGDDQVTLKV 232

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           T+AEV R +LKQ+GF   ++   SG S    A+  G  +  G +  +KG +   +  + +
Sbjct: 233 TVAEVSRQVLKQLGFNGRVSDGESGISFRNPANL-GDMIGIGTNALIKGSIGGTTISSYI 291

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTH----D 311
           +A+E+A  +RTLAEP+LTAISGQ A F  GG+     V        +G T+V       +
Sbjct: 292 NAMEQAGVMRTLAEPSLTAISGQEAKFYVGGEFRLAGVQEVSTDDDSGETTVEREVNDVE 351

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMP-----SYRVRKADTTV 360
           YG+ L+F P VL PGRI L+I+T+VSEP      V G    ++P       R R+A T+V
Sbjct: 352 YGIRLNFKPVVLGPGRISLQIETDVSEPTYEGSVVTGNGTVNIPGNTFLGIRRREASTSV 411

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ELPSGG+IV+AGL++D+I+Q   G+P  SKIPILG LFR+  F R ETE+ I ATP+LV+
Sbjct: 412 ELPSGGSIVIAGLVQDNIRQAMSGLPAASKIPILGTLFRSKDFQRSETELVIIATPYLVR 471

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           PVA   +SRPDD+++  +D ++FF  RVN+IYG  EA    G+ Y G +GFIYK
Sbjct: 472 PVARSAISRPDDNFNPANDLESFFLGRVNRIYGRAEAQPPAGR-YHGNVGFIYK 524


>gi|260461949|ref|ZP_05810194.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259032196|gb|EEW33462.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 505

 Score =  359 bits (921), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 196/471 (41%), Positives = 297/471 (63%), Gaps = 51/471 (10%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           +++ +GLNK +++ +P D  D+LV++P+ AD V  + R +YLFGK VG+ N+ + G +G+
Sbjct: 42  QRVKLGLNKSVVIDLPSDAYDILVANPSVADAVTRTARRIYLFGKAVGETNIFVFGPNGE 101

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           Q+ +LD+ +ERD+A LE  +RRFI  S+I+VE+++D VVL G V T  DS+RAV+L+  F
Sbjct: 102 QIASLDLAVERDVAGLEDYIRRFIPTSDIKVELLNDNVVLTGTVDTPLDSKRAVDLATIF 161

Query: 168 LS--QSGRNQYANSS-------------------SKKVMNLLNIAGEDQVTLKVTIAEVR 206
           +S  ++   QY+ ++                   + K++NLL I G+DQVTLKVT+AEV 
Sbjct: 162 VSGGEATTGQYSQTAAGGSAQSGVDINNPDQERRTSKIVNLLQIIGDDQVTLKVTVAEVS 221

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALER 265
           R ++KQ+G     +G S+G S    +D    F   G   S  G  ++    +  ++A+E+
Sbjct: 222 RSVMKQLGVNMVGSGGSNGISYGALSD---PFTGLGKPLSNAGFSINASGLQAYINAMEQ 278

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQH-LYKTVSSSTGAT--------SVTTHDYGVVL 316
           +  ++TLAEPTLTA+SG+ A+F  GG++ +   VS++  A         SV   +YG+ L
Sbjct: 279 SGVMKTLAEPTLTAVSGEKATFKVGGEYNMVTGVSANVSADNQTGLKTYSVDKIEYGIGL 338

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVI-------------GVNAGDMPSYRVRKADTTVELP 363
            F P VLSPGRI L+++T VSEP               G+NA    S R R ADTTVELP
Sbjct: 339 EFQPVVLSPGRISLKVRTSVSEPTTEGSVSSSTSNTSVGMNA---LSLRKRLADTTVELP 395

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SGG++++AGL++DD++Q   G+P L+KIP+LGALFR+  F R ETE+ I  TP+LVKPVA
Sbjct: 396 SGGSMMIAGLVRDDVRQAVNGLPGLTKIPVLGALFRSRDFVRNETELVIIITPYLVKPVA 455

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
             DL++PDD+++   D  A F  +VN++YG  +  +  G+ Y G +G+IYK
Sbjct: 456 RNDLAKPDDNFNAASDGAAMFLGKVNRVYGTMQTDKPNGR-YHGVVGYIYK 505


>gi|13474660|ref|NP_106229.1| exporter protein, cpaC [Mesorhizobium loti MAFF303099]
 gi|14025415|dbj|BAB52015.1| exporter protein; CpaC [Mesorhizobium loti MAFF303099]
          Length = 471

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/468 (41%), Positives = 298/468 (63%), Gaps = 45/468 (9%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           +++ +GLNK +++ +P D  D+LV++PT AD V  + R +YLFGK+VG+ N+ + G +G+
Sbjct: 8   QRVKLGLNKSVVIDLPSDAYDILVANPTVADAVTRTARRIYLFGKSVGETNIFVFGPNGE 67

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           Q+ +LD+ +ERD+A LE  +RRF+  S+++VE+++D VVL G V T  D++RAV+L+  F
Sbjct: 68  QIASLDLAVERDVAGLEDYIRRFLPTSDVKVELLNDNVVLTGTVDTPLDAKRAVDLATIF 127

Query: 168 LS--QSGRNQYANSSS-------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206
           +S  ++   QY+ +++                    K++NLL I G+DQVTLKVT+AEV 
Sbjct: 128 VSGGEATTGQYSQTAAGGSAQGGVDINNPDQERRVSKIVNLLQIIGDDQVTLKVTVAEVS 187

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALER 265
           R ++KQ+G      G S+G S    +D    F   G   S  G  +   +    ++A+E+
Sbjct: 188 RSVMKQLGVNMVGNGGSNGISYGALSD---NFTGLGKQLSHSGFNIGNSALMAYINAMEQ 244

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQH-LYKTVS---SSTGATSVTTH-----DYGVVL 316
           +  ++TLAEPTLTA+SG+ A+F  GG++ L   VS   SS   T +TT+     +YG+ L
Sbjct: 245 SGVMKTLAEPTLTAVSGEKATFKVGGEYNLLTGVSQNVSSDNQTGLTTYTINKIEYGIGL 304

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVI--------GVNA--GDMPSYRVRKADTTVELPSGG 366
            F P VLSPGRI L+++T VSEP          GV +   +M S R R ADTTVELPSGG
Sbjct: 305 EFQPVVLSPGRISLKVRTSVSEPTTEGSVALSNGVTSPGANMLSLRKRLADTTVELPSGG 364

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++AGL++DD++Q   G+P L+KIP+LGALFR+  F R E+E+ I  TP+L KPVA  D
Sbjct: 365 SMMIAGLVRDDVRQAVNGLPGLTKIPVLGALFRSRDFVRNESELVIIITPYLAKPVARND 424

Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           L++PDD+++   D  A F  +VN++YG  +  +  G+ Y G +G+IYK
Sbjct: 425 LAKPDDNFNPASDGAANFLGKVNRVYGTMQTDKPNGR-YHGVVGYIYK 471


>gi|319785608|ref|YP_004145084.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317171496|gb|ADV15034.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 506

 Score =  352 bits (903), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 191/468 (40%), Positives = 293/468 (62%), Gaps = 45/468 (9%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           +++ +GLNK +++ +P D  D+LV++P  AD V  + R +YLFGK VG+ N+ + G +G+
Sbjct: 43  QRVKLGLNKSVVIDLPSDAYDILVANPAVADAVTRTARRIYLFGKAVGETNIFVFGPNGE 102

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           Q+++LD+ +ERD+A LE  +RRF+  S ++VE+++D VVL G V T  D++RA +L+  F
Sbjct: 103 QIVSLDLAVERDVAGLEDYIRRFLPTSAVKVELLNDNVVLTGTVDTPLDAKRAEQLANMF 162

Query: 168 LS--QSGRNQYANSS-------------------SKKVMNLLNIAGEDQVTLKVTIAEVR 206
           +S  ++   QY+ ++                   + +++NL+ I G+DQVTLKVT+AEV 
Sbjct: 163 VSGGEATTGQYSQTAAGGSAQSGVDINNPDQERRTSQIVNLIQIIGDDQVTLKVTVAEVS 222

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALER 265
           R ++KQ+G     +G S+G S    +D    F   G   S  G  +     +  ++A+E+
Sbjct: 223 RSVMKQLGVNMVGSGGSNGISYGAISD---NFTGLGKQLSNSGFQIGASGLQAYVNAMEQ 279

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TG--ATSVTTHDYGVVL 316
           +  ++TLAEPTLTA+SG+ A+F  GG++   T  S+       TG    SV   +YG+ L
Sbjct: 280 SGVMKTLAEPTLTAVSGEKATFKVGGEYNMVTGVSANVSQDNQTGLKTYSVEKIEYGIGL 339

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRK--ADTTVELPSGG 366
            F P VLSPGRI L+++T VSEP          GV +  M +  +RK  ADTTVELPSGG
Sbjct: 340 EFQPVVLSPGRISLKVRTSVSEPTTEGSVSFSSGVTSPGMNALSLRKRLADTTVELPSGG 399

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++AGL++DD++Q   G+P L+KIP+LGALFR+  F R ETE+ I  TP+LVKPVA  D
Sbjct: 400 SMMIAGLVRDDVRQAVNGLPGLTKIPVLGALFRSRDFVRNETELVIIITPYLVKPVARND 459

Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           L++PDD+++   D    F  RVN++YG  +  +  G+ Y G +GFIYK
Sbjct: 460 LAKPDDNFNAASDGAGMFLGRVNRVYGTMQTDKPNGR-YHGVVGFIYK 506


>gi|239833237|ref|ZP_04681566.1| type II and III secretion system protein [Ochrobactrum intermedium
           LMG 3301]
 gi|239825504|gb|EEQ97072.1| type II and III secretion system protein [Ochrobactrum intermedium
           LMG 3301]
          Length = 507

 Score =  348 bits (894), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 209/521 (40%), Positives = 303/521 (58%), Gaps = 61/521 (11%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG---KGKKISIGLNKV 57
           MR   R       I L +   +   LP       A   I  V++G   + + I +GLNK 
Sbjct: 1   MRKTNRVRPYSARIALLAGALATVSLPLADMTAMAAAGI--VKVGSQQRSQTIKLGLNKS 58

Query: 58  IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
           ++L +P D  DVLVS+PT AD V  + R +YLFGK VGQ N+ + G +G+Q+ ++D+ IE
Sbjct: 59  VVLDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGQNGEQVASIDVEIE 118

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--QSGRNQ 175
           RD++ L   L+R I  S+IRVE+++D VVL G V+T QDS +A +L+  F+S  ++   Q
Sbjct: 119 RDVSGLSSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQ 178

Query: 176 YANSSS-------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           Y+ ++S                     ++N+L I GEDQVTLKVT+AEV R ++KQ+G  
Sbjct: 179 YSTTASAPTDGGGVAINNPDWGRRQSAIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVN 238

Query: 217 HSITGSSSGPSKSFAADFGGKFVSE------GGDFSVKGV-LDRFSFETVLHALERATAI 269
            + +G S+G S      +GG  +SE      G + S  G  L   +F   L A+E A  +
Sbjct: 239 MTGSGVSNGIS------YGG--ISENIAGAIGNNLSDTGFGLATSNFSAYLRAMESAGVM 290

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------GATSVTTHDYGVVLHFTPTVL 323
           +TLAEPTLTAISG+ A+F  GG+  Y  ++S T          +   +YG+ L F PTVL
Sbjct: 291 KTLAEPTLTAISGEKAAFNVGGE--YNVINSVTYDDDGKRTNQLAKINYGIGLEFMPTVL 348

Query: 324 SPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
            PGRI L+I+T VSEP            GV A  + S R R ADTTVELPSGG++++ GL
Sbjct: 349 GPGRISLKIRTSVSEPTTEGAGTTNKMEGVGASVL-SLRKRVADTTVELPSGGSMMIGGL 407

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           ++D+++Q   G P L+KIP+LGALFR+  F R E+E+ +  TP+L +PVA + L+RPDD+
Sbjct: 408 IRDEVRQSVSGFPGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDN 467

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            +   D   +   +VN++YG  E     G+ Y G +G+IYK
Sbjct: 468 LNPASDGAGYILGKVNRVYGTMETKLPPGR-YNGVVGYIYK 507


>gi|110636321|ref|YP_676529.1| type II and III secretion system protein [Mesorhizobium sp. BNC1]
 gi|110287305|gb|ABG65364.1| type II and III secretion system protein [Chelativorans sp. BNC1]
          Length = 516

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 197/476 (41%), Positives = 290/476 (60%), Gaps = 54/476 (11%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           +++ +GLNK ++L +P D  D+LV++P  AD V  + R +YLFGK VG+ N+ + G  G+
Sbjct: 46  ERLKLGLNKTLVLDLPSDAYDILVANPAVADAVTRTARRIYLFGKQVGETNIFVFGAGGE 105

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           Q+  +D+ +ERD+A LE  L+RFI +SNI VE+++D VVL G V T  D+ RA +L+  F
Sbjct: 106 QIARIDVAVERDVAGLEQYLKRFIPNSNIDVELINDNVVLTGTVETPLDASRAAQLATIF 165

Query: 168 LS--QSGRNQYANSSS-------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206
           ++  ++   QY+ +++                    K++N+L I GEDQVTLKVT+AEV 
Sbjct: 166 VTGGEATTGQYSQTAAAPTDGGGVAISNPDSARQVSKIVNMLQIIGEDQVTLKVTVAEVS 225

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           R ++KQ+G     +GS  G S     D  +G    +     ++ G L     +  L+A+E
Sbjct: 226 RSVMKQLGVNMIGSGSLDGISWGAIVDSPYGLGAPASASQLALGGSL----LQGYLNAME 281

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGG-------QHLYKTVSSSTGATSVTTH----DYG 313
           +A  ++TL+EPTLTAISG+ A+F  GG       Q + +  +S   A  +T      DYG
Sbjct: 282 QAGVMKTLSEPTLTAISGEKATFKVGGEFNLVTGQKVEQGDASKGQADQLTYEVEKIDYG 341

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPV-----------IG--VNAGDMPSYRVRK--ADT 358
           + L FTPTVLSPGRI L+++T VSEP            IG   N+  M +  +RK  ADT
Sbjct: 342 IGLEFTPTVLSPGRISLKVRTSVSEPTFEGSFSLGSPSIGGRFNSPGMNALSIRKRLADT 401

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TVELPSGG++++AGL++DD++Q   G+P LSKIPILG LFR+  F R ETE+ I  TP+L
Sbjct: 402 TVELPSGGSMMIAGLVRDDVRQTINGLPGLSKIPILGTLFRSRDFVRNETELVIIITPYL 461

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            +PVA   L+RPDD+++   D    F  RVN+IYG  + +  +G+ Y G +G+IYK
Sbjct: 462 ARPVARTALARPDDNFNPPSDGAGIFLGRVNRIYGAMKTNLPKGR-YHGVVGYIYK 516


>gi|153008059|ref|YP_001369274.1| type II and III secretion system protein [Ochrobactrum anthropi
           ATCC 49188]
 gi|151559947|gb|ABS13445.1| type II and III secretion system protein [Ochrobactrum anthropi
           ATCC 49188]
          Length = 507

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 205/521 (39%), Positives = 304/521 (58%), Gaps = 61/521 (11%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG---KGKKISIGLNKV 57
           MR  +R       + L +S  +   LP    +  A   +  V++G   + + I +GLNK 
Sbjct: 1   MRKTKRVRPYSAKVALLTSALAAFSLPLTDMSAMAAAGV--VKVGSQQRSQTIKLGLNKS 58

Query: 58  IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
           ++L +P D  DVLVS+PT AD V  + R +YLFGK VGQ N+ + G +G+Q+ ++D+ IE
Sbjct: 59  VVLDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGPNGEQVASIDVEIE 118

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--QSGRNQ 175
           RD++ +   L+R I  S+IRVE+++D VVL G V+T QDS +A +L+  F+S  ++   Q
Sbjct: 119 RDVSGISSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQ 178

Query: 176 YANSSS-------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +  ++S                     ++N+L I GEDQVTLKVT+AEV R ++KQ+G  
Sbjct: 179 FTTTASAPTDGGGVAINNPDRNRRASAIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVN 238

Query: 217 HSITGSSSGPSKSFAADFGGKFVSE------GGDFSVKGV-LDRFSFETVLHALERATAI 269
            + +G S+G S      +GG  +SE      G + S  G  L   +F   L A+E A  +
Sbjct: 239 MAGSGVSNGIS------YGG--ISESIAGAIGNNLSDTGFGLATSNFSAYLRAMESAGVM 290

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVTTHDYGVVLHFTPTVL 323
           +TLAEPTLTAISG+ A+F  GG+  Y  ++S            +   +YG+ L F PTVL
Sbjct: 291 KTLAEPTLTAISGEKAAFNVGGE--YNVINSVKYDDDGKRTNELAKINYGIGLEFMPTVL 348

Query: 324 SPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
            PGRI L+I+T VSEP            GV A  + S R R ADTTVELPSGG++++ GL
Sbjct: 349 GPGRISLKIRTSVSEPTTEGAGTTNKMDGVGASVL-SLRKRVADTTVELPSGGSMMIGGL 407

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           ++D+++Q   G P L+KIP+LGALFR+  F R E+E+ +  TP+L +PVA + L+RPDD+
Sbjct: 408 IRDEVRQSVSGFPGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDN 467

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            +   D   +   +VN++YG  E     G+ Y G +G+IYK
Sbjct: 468 LNPASDGAGYILGKVNRVYGTMETKLPPGR-YNGVVGYIYK 507


>gi|90419764|ref|ZP_01227673.1| Flp pilus assembly protein, secretin CpaC (type II and type III
           secretion system) [Aurantimonas manganoxydans SI85-9A1]
 gi|90335805|gb|EAS49553.1| Flp pilus assembly protein, secretin CpaC (type II and type III
           secretion system) [Aurantimonas manganoxydans SI85-9A1]
          Length = 540

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 202/537 (37%), Positives = 302/537 (56%), Gaps = 74/537 (13%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           +R   R    +M+    +  P    LP   +A   V+N+        + I++GLNK  ++
Sbjct: 15  LRARLRKLVVVMAAASTALAPLATTLP--AQAEQTVVNVRQ----GSQSINLGLNKTKVI 68

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +  D  D+LV++P  AD V    R +Y+FGK +GQ N+++     +Q+ ++D+ IERDI
Sbjct: 69  VLEADAHDILVANPAVADAVTRDARRIYIFGKQIGQTNIVVFDRQNRQIASIDLKIERDI 128

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--QSGRNQYAN 178
             LE T+R+++  S ++VEM++D VVL+G V+T QD+ +   L+  F++  +    QY  
Sbjct: 129 NGLEATIRKYVPSSVVQVEMLNDNVVLNGTVQTPQDAAKVERLARLFVTGGEGTTGQYIQ 188

Query: 179 SSS---------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
            ++                      +++NLL I GEDQVTLKVT+AEV+R ++KQ+G   
Sbjct: 189 QATASGGAGGGDGDVGFAQEDRRQSQIVNLLQIQGEDQVTLKVTVAEVQRSVVKQLGINS 248

Query: 218 SI-TGSSSGPSKS-FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           +   G + G + S FA    GK +S     +  G +  F     L+A+E+A  +RTLAEP
Sbjct: 249 TAGKGVTYGQTDSPFAL---GKALSSS-MLASAGSIGGFDITAQLNAMEQAGVMRTLAEP 304

Query: 276 TLTAISGQSASFTSGG---------------------------QHLYKTVSSSTGATSV- 307
           +LTAISG+ ASF  GG                           Q +Y T+ +     S+ 
Sbjct: 305 SLTAISGEKASFKVGGEFTVPDAQSYDPGTPARREFQGYDGSGQAIYDTIPAEPPTRSID 364

Query: 308 -TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRK--AD 357
            T  +YG+ L FTP VLSPGRI L+I+T VSEP       + G   G + +  +RK  AD
Sbjct: 365 KTRVEYGIGLDFTPVVLSPGRISLKIRTAVSEPTFEMPFNISGGKDGGVGTVGIRKRLAD 424

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTVELPSGG++V+AGL++D+++Q+  G P LSKIP+LG LFR+  F R ETE+ I  TP+
Sbjct: 425 TTVELPSGGSLVIAGLVRDEVRQVMSGFPGLSKIPVLGTLFRSRDFQRYETELVIIVTPY 484

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           LV+PV  + L+RPDD +++  D  A F  RVN++YG  E     G+ Y G +GFIYK
Sbjct: 485 LVRPVPRQALARPDDGFALSSDGAANFLGRVNRVYGHMETKLPPGR-YHGVVGFIYK 540


>gi|114705456|ref|ZP_01438364.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506]
 gi|114540241|gb|EAU43361.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506]
          Length = 544

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 192/503 (38%), Positives = 286/503 (56%), Gaps = 77/503 (15%)

Query: 42  VEIGKGK-KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           V+IG G  +I +GL+K  +L +  D  D+LV++P+ AD +    R +YLFGK VGQ N+I
Sbjct: 49  VQIGAGHTRIELGLDKSKVLVLSADAHDILVANPSIADALTRDRRHIYLFGKQVGQTNLI 108

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           +     +Q+ ++DI IERDIA L   + +++ DS+++VE+++D VVL G VRT  DS+R 
Sbjct: 109 VFDQANRQIASIDIQIERDIAGLSQAIAKYVPDSDVKVEIMNDNVVLTGRVRTPLDSKRV 168

Query: 161 VELSETFLS--QSGRNQYANSSS---------------------KKVMNLLNIAGEDQVT 197
            +++  +L+  ++   QY  S+S                      +++NLL I GEDQVT
Sbjct: 169 SQIASAYLTGGEATTGQYIRSASAGGESEGSNGDVAFASETRRESQIINLLQIEGEDQVT 228

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVLDRFS 255
           LKVT+AEV+R I+KQ+G   + +    G +     D  FG    +   +F + G +    
Sbjct: 229 LKVTVAEVQRSIIKQLGLNGATSSVIDGMTFGSLIDNPFGLGKAASNSNFGLAGTIGDTG 288

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--------------------- 294
               L A+++A  +RTLAEP LTAISG+SASF  GG+ L                     
Sbjct: 289 IRAQLSAMDQAGVMRTLAEPNLTAISGESASFKVGGEFLLPTGQSYDYGEEAKREFKGFD 348

Query: 295 ------YKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEP------- 339
                 Y+ V ++    +V T   +YG+ L FTP VLSPGRI L+++T VSEP       
Sbjct: 349 GDGRAIYEEVPATRDVRTVETKTIEYGIGLDFTPVVLSPGRISLKVRTSVSEPTFETPFG 408

Query: 340 --------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
                   V G+        R R ADTTVELPSGG++V+AGL++D+++Q+  G P LSK+
Sbjct: 409 SSGGFDGGVTGIG------IRKRLADTTVELPSGGSLVIAGLVRDEVRQVVSGFPGLSKL 462

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P+LG+LFR+  F R ETE+ +  TP+LV+PVA   L+RPDD  +   D  + F  ++N++
Sbjct: 463 PVLGSLFRSRDFQRYETELVVIVTPYLVRPVAREALARPDDGLAFASDGASNFLGKINRV 522

Query: 452 YGPKEASEVEGQNYKGAIGFIYK 474
           YG  E     G+ Y G +G+IYK
Sbjct: 523 YGHSETKLPPGR-YHGVVGYIYK 544


>gi|304392384|ref|ZP_07374325.1| type II and III secretion system protein [Ahrensia sp. R2A130]
 gi|303295488|gb|EFL89847.1| type II and III secretion system protein [Ahrensia sp. R2A130]
          Length = 544

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 182/446 (40%), Positives = 271/446 (60%), Gaps = 21/446 (4%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           K + +GL+K +++ +P    DVLV++P  AD V+ + + +YLFGK VGQ NV +  + G 
Sbjct: 101 KLVRLGLDKSLVVDLPSVANDVLVANPGVADAVMRTSQRLYLFGKQVGQTNVFVFDNGGN 160

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           Q+  L+ILIERDI+ LE TL R I +S+I+ EM++D +VL G V T  DS +A  L++ F
Sbjct: 161 QIAALEILIERDISGLEETLSRLIPNSDIQAEMINDNIVLTGRVSTPSDSTKAQSLAQIF 220

Query: 168 LSQSGRNQ--------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           +    +          + ++ + +++NLL I GEDQV LKV+I E++R ++KQ+G   S+
Sbjct: 221 VRGGEQTTNPAQQSSIFGDAPTSEIVNLLKIDGEDQVMLKVSIVEIQRSVVKQLGITTSL 280

Query: 220 TGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
           T ++ G    F+   GG        G   S   V  + + +  L  L+    IR LAEPT
Sbjct: 281 TNAAEG-GFGFSTIAGGSVRNIAGAGLRGSANIVSGQNTLDAQLRVLDHTGMIRMLAEPT 339

Query: 277 LTAISGQSASFTSGGQHLY-KTVSSSTGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQ 333
           LTAISG++A F +GG +   + +      TS+   +  YGV L F PTVL+ GRI L+++
Sbjct: 340 LTAISGEAAEFRAGGTYQAPQQIERDENGTSIEYEERQYGVSLQFIPTVLTEGRISLKLK 399

Query: 334 TEVSEPVIGVNAG-----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           TEV EP +  + G      +   R R A TTVELPSGG++ +AGL++DD++Q   G P L
Sbjct: 400 TEVKEPSLHGSTGRSSDAGLFGTRERVASTTVELPSGGSMAIAGLIQDDLRQNISGFPGL 459

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
           SK+PI GALFR+  F+R ETE+ I  TP+LV+PVA   L+ PD+ +    +    F  RV
Sbjct: 460 SKLPIFGALFRSREFHRSETELVIIVTPYLVRPVARAKLANPDEGFQPASEPAGIFMGRV 519

Query: 449 NKIYGPKEASEVEGQNYKGAIGFIYK 474
           N++YG K+ +  +G+ Y G+IGFI K
Sbjct: 520 NRVYGTKQGNLPKGR-YTGSIGFILK 544


>gi|118589703|ref|ZP_01547108.1| pilus assembly protein [Stappia aggregata IAM 12614]
 gi|118437789|gb|EAV44425.1| pilus assembly protein [Stappia aggregata IAM 12614]
          Length = 483

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 184/455 (40%), Positives = 280/455 (61%), Gaps = 38/455 (8%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
           ++I+  E   G+ +++G+ + +++ +  D  DVLVS+P  AD V+ +PR +++ G   GQ
Sbjct: 50  VHIAAGERATGRILNVGVGRSVVINLAEDAADVLVSNPEIADAVLRTPRRIFVIGNTAGQ 109

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
           + ++L    G+++ + D+ +E+D + +   +R+ I  SNI  E ++ +VVL G  ++  +
Sbjct: 110 SRLVLFSRSGRELASFDVRVEKDTSDITRIIRKLIPGSNIFAESINGSVVLSGTAKSTLE 169

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-- 214
           +Q+A +++  F       Q A S+S+ V+NL+++AG+DQV LKVT+AEV R I+KQ+G  
Sbjct: 170 AQQAADIAAKF-------QGAASASE-VVNLISVAGKDQVHLKVTVAEVERSIIKQLGVQ 221

Query: 215 FQHSITGSSSGPSKSFAADF-----------GGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           FQ +I   +  P  S   +F           GG  ++ G            S    + AL
Sbjct: 222 FQGTIGIGNFTPFMSSLPNFTVNPTIVNQAVGGTQLTAGAT----------SITAQVEAL 271

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +R   IRTLAEPTLTAISG++ASF +GG+     +S   G  SV    +GV L FTP VL
Sbjct: 272 QREGVIRTLAEPTLTAISGENASFLAGGEFPIP-ISQRDGELSVEFKKFGVGLDFTPVVL 330

Query: 324 SPGRIGLRIQTEVSEPVI--GVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           S GRI LR++TEVSE      V+AG +   + +VR+A++T+ELPSGGT+V+AGLL++  Q
Sbjct: 331 SEGRISLRVKTEVSELSNDGAVSAGGITISALKVRRAESTMELPSGGTLVMAGLLQESYQ 390

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
           Q  EG+P L +IPILGALF++  F RE+TE+ +  TP++V+PVA+  L RPD +     D
Sbjct: 391 QAIEGVPGLMQIPILGALFKSRDFLREQTELAVFVTPYVVQPVAVSKLQRPDKNLMAPSD 450

Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           A   F NR+NKIY P  A+  EG  Y G +GFIYK
Sbjct: 451 AGTIFLNRLNKIYNPTGAA-AEG-TYHGQVGFIYK 483


>gi|254501806|ref|ZP_05113957.1| Putative phospholipid-binding domain family [Labrenzia alexandrii
           DFL-11]
 gi|222437877|gb|EEE44556.1| Putative phospholipid-binding domain family [Labrenzia alexandrii
           DFL-11]
          Length = 483

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 173/465 (37%), Positives = 275/465 (59%), Gaps = 44/465 (9%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89
           +EA  + I+++  E    + +++G+ + +++ +  D  DVLVS+P  AD V+ +PR +++
Sbjct: 43  QEAFPSQIHVAAGERATDRILNVGIGRSVVINLAEDAADVLVSNPQIADAVLRTPRRIFV 102

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149
            G   GQA ++L G  G+++ + DI +E+D + +   +RR I  ++++ E ++  VVL G
Sbjct: 103 LGNTAGQARLVLFGRSGRELASFDIRVEKDTSDITRIIRRLIPGTSVQAESINGKVVLSG 162

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
             ++  ++Q+A +++  F          + +   ++NL+ ++G DQV LKVT+AEV R I
Sbjct: 163 TAKSTLEAQQAADIAAKF--------QGDETGSAIVNLIAVSGSDQVHLKVTVAEVERSI 214

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFG-GKFVSEGGDF------------SVKGVL---DR 253
           +KQ+G              SF A+ G G F   G +F            +  GV      
Sbjct: 215 IKQLGV-------------SFQANLGAGNFFPFGSNFPNFNVNPSIVNQATGGVTFSSGT 261

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            S    + AL+R   IRTLAEPTLTA SG++ASF +GG+     ++      SV    +G
Sbjct: 262 SSLTAQVEALQRDGVIRTLAEPTLTATSGENASFLAGGEFPIP-IAQEDNQISVEFKKFG 320

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDM--PSYRVRKADTTVELPSGGTIV 369
           V L FTP VL+ GRI LR++TEVSE      V+AG +   + +VR+A++T+ELPSGGT+V
Sbjct: 321 VGLDFTPIVLTGGRISLRVKTEVSELSNEGAVSAGGITISALKVRRAESTMELPSGGTLV 380

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           +AGLL++  QQ  EG+P L +IP+LGALF++  F +++TE+ +  TP++VKPVA + + R
Sbjct: 381 MAGLLEESYQQAVEGVPGLMQIPVLGALFKSRDFLKQQTELAVFVTPYVVKPVAAQKMVR 440

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           PD +     DA+A F NR+NKI+ P  A E     Y G +GFIYK
Sbjct: 441 PDKNLFAPSDAEAIFLNRLNKIFNP--AGEQAQGTYHGQVGFIYK 483


>gi|92116013|ref|YP_575742.1| type II and III secretion system protein [Nitrobacter hamburgensis
           X14]
 gi|91798907|gb|ABE61282.1| type II and III secretion system protein [Nitrobacter hamburgensis
           X14]
          Length = 486

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 178/493 (36%), Positives = 278/493 (56%), Gaps = 55/493 (11%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
            +  +I  F+ NP+   L P+  ++  V   +       + +S+G+ K +++ +P DV+D
Sbjct: 18  LSFAAIAAFTLNPA---LTPVFASDYRVPAATAGAKMHAQSLSLGIGKSVVVDLPRDVKD 74

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           VLV+DP  A+ VV S +  Y+ G  VGQ N+I     G+Q+   DI + RD+  L   L+
Sbjct: 75  VLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDGSGQQISAYDIAVTRDLNGLRAALK 134

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
           + + +++I+++ + D VVL G  ++  +SQ+A +L+                + KV+N +
Sbjct: 135 QILPNADIKIDGLGDGVVLSGWAQSPVESQQAADLAARLAG----------GADKVVNSI 184

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIG---------------FQHS----ITGSSSGPSKS 229
            + G DQV LKV +AEV+RDI+KQ+G               F +S     TGS+  P  S
Sbjct: 185 AVRGRDQVMLKVVVAEVQRDIIKQLGVDLSANLSYGTAVVNFNNSNPFLATGSALVPGNS 244

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETV---LHALERATAIRTLAEPTLTAISGQSAS 286
               FG            K +++  +  TV   L A+E +  IRTLAEP+LTAISG+SA+
Sbjct: 245 VVGGFG------------KSIINGVTMPTVQATLRAMENSGVIRTLAEPSLTAISGESAN 292

Query: 287 FTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339
           F +GG+    +  S T  T   +VT   +G+ L+FTP VLS GRI LR+ TE SE     
Sbjct: 293 FLAGGEFPIPSGVSCTNGTCTPTVTFKKFGISLNFTPVVLSEGRISLRVATEASEVNNEN 352

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            I ++   +PS + R+ADTT+E+PSGG++V+AGL+K   +Q   G+P +S+IP+LG LFR
Sbjct: 353 AIQISGTAVPSIKTRRADTTLEIPSGGSMVMAGLIKQQTKQSISGMPGVSQIPVLGTLFR 412

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           +  +    TE+ I  TP++V+ VA +DLSRPDD ++   D +A     +N+IYG    +E
Sbjct: 413 SRDYVNNNTELMILVTPYVVRAVAQKDLSRPDDGFADASDPQADLLGSINRIYGVPGRAE 472

Query: 460 VEGQNYKGAIGFI 472
              + Y+G  GFI
Sbjct: 473 -PARQYRGTYGFI 484


>gi|86748907|ref|YP_485403.1| type II and III secretion system protein [Rhodopseudomonas
           palustris HaA2]
 gi|86571935|gb|ABD06492.1| type II and III secretion system protein [Rhodopseudomonas
           palustris HaA2]
          Length = 479

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 172/487 (35%), Positives = 278/487 (57%), Gaps = 33/487 (6%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG---KKISIGLNKVI 58
           R+++    T M++   S+  ++  LPP     A+    +  + G G   + +++G+ K +
Sbjct: 8   RFIRTLTGTAMAV---SAVVALTMLPPWTPVKASDYRATTTQTGGGMNARPLALGIGKSV 64

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++ +P D++DVLV+DP  A+ VV S +  Y+ G  VGQ N++     G+Q+   DI + R
Sbjct: 65  VIDLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTR 124

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D+  +   L++ I +++IRVE + D V+L G V T  ++Q+A +L+      +       
Sbjct: 125 DLNGIRAALQQSIPNADIRVEGLGDGVILMGSVATPIEAQQAADLAARLAGDA------- 177

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----AD 233
               KV+N + I G DQV LK+T+AEV+RDI+KQ+G   +   S      SF        
Sbjct: 178 ---SKVVNNIAIRGRDQVMLKITVAEVQRDIVKQLGVDLTANLSYGTSVVSFTNTNPFTQ 234

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            G   VS  G+       +  S    L A+E A  +RTLAEP LTAISG+ ASF +GG+ 
Sbjct: 235 SGQALVS--GNALTTSFGNGPSITATLKAMESAGVVRTLAEPNLTAISGEPASFLAGGEF 292

Query: 294 LYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346
              +  + T A    SV+   +GV+L+FTP VLS GRI L++ TEVSE      + ++  
Sbjct: 293 PVPSGVTCTNAVCTPSVSYKKFGVLLNFTPVVLSEGRISLKVATEVSEVSSDNSVTISGT 352

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +PS + R+ D+TVE+PSGG++ +AGL+++  +Q   G+P +++IPILG LFR+  +   
Sbjct: 353 TVPSIKTRRVDSTVEIPSGGSLAMAGLIQEQTKQAINGMPGMTQIPILGTLFRSRDYINR 412

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG-PKEASEVEGQNY 465
           ++E+ +  TP++V+ VA +DLSRPDD ++   D ++     +N+IYG P      + Q Y
Sbjct: 413 QSELMVLVTPYVVRAVAPKDLSRPDDGFADASDPQSDLLGSINRIYGVPGRTG--QSQTY 470

Query: 466 KGAIGFI 472
           +G  GFI
Sbjct: 471 RGRFGFI 477


>gi|154250689|ref|YP_001411513.1| type II and III secretion system protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154154639|gb|ABS61856.1| type II and III secretion system protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 491

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 170/470 (36%), Positives = 262/470 (55%), Gaps = 49/470 (10%)

Query: 32  ANAAVINISDVEIGKGKK-ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
            +A ++ I    IG+  + I +GLNK  I+++P+  +DVLVS+P   D VV + +  YL 
Sbjct: 40  GDARLVKIDQGGIGQSSRSIVLGLNKAAIVELPIAARDVLVSNPAIVDAVVRTNKRTYLI 99

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           G  VGQ N       G+Q+LNL+I + RD+  L  +LR++   + I VE ++D VVL GM
Sbjct: 100 GLAVGQTNAFFFNEAGQQILNLEIRVARDLTGLRESLRQYFPKARIDVESINDHVVLSGM 159

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           V +  D+ +A + +          +Y     + V+N+L I G++QV LKVT+AE++R+++
Sbjct: 160 VASATDASKAQDFAA---------RYIGGDKEHVLNMLGIEGKEQVMLKVTVAEMQRNVI 210

Query: 211 KQIGF-------------------QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           KQ+G                      S+ G S G   + AAD       + GD +V    
Sbjct: 211 KQLGVDLSTAANFGDFALRLATSNSFSVQGGSLG-GLTTAADAADPTRYQSGDVTV---- 265

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                ++ + ALER   +RTLAEP LTAISG+SA F +GG+    T     G   +    
Sbjct: 266 -----DSAIRALERDGILRTLAEPNLTAISGESAKFLAGGEFPVPTSRDRDGNVQLEFKP 320

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGD---MPSYRVRKADTTVEL 362
           +GV L+FTP VLS GRI L+I TEVSE       V    + D   +P  +VR+A+TT+EL
Sbjct: 321 FGVGLNFTPVVLSEGRISLKISTEVSELTSEGAFVFQSTSADGVTVPGLKVRRAETTLEL 380

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           PSGG++V+AGLL D ++Q  +G+P +  +P+LG LFR+  + + ETE+ +  TP+LV P 
Sbjct: 381 PSGGSLVMAGLLSDTMRQNIDGVPGVKDVPVLGQLFRSRDYQKNETELVVIVTPYLVDPT 440

Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
           + ++L  P D ++   D       R+N  YG + A+  +  + +G +GFI
Sbjct: 441 SRKNLVLPTDGFAPASDMDTILMGRLNATYGARGAAPGD-HSLQGPVGFI 489


>gi|146338123|ref|YP_001203171.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278]
 gi|146190929|emb|CAL74934.1| putative Pilus assembly protein cpaC; putative signal peptide
           [Bradyrhizobium sp. ORS278]
          Length = 500

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 163/450 (36%), Positives = 258/450 (57%), Gaps = 44/450 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++G+ K +++ +P D++DVLV+DP  A+ VV S +  Y+ G  VGQ N++     G+Q+
Sbjct: 66  LALGVGKSVVIDLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDAQGQQI 125

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
              DI ++RD+      L++ + +++I++E + D +VL G   +  ++Q+A EL+     
Sbjct: 126 AAYDIAVKRDLNGARAALKQLLPNADIQIEGLGDGIVLTGSASSQIEAQQAGELAARLAG 185

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------IT 220
                      ++KV+N + + G DQV LKVT+AEV+R ++KQ+G   S         + 
Sbjct: 186 ----------GAEKVVNSITVRGRDQVMLKVTVAEVQRSVVKQLGIDLSGQLNYGTAVVK 235

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
            ++S P   F A +G   VS     +  G     S +  L A+E A  IRTLAEP LTAI
Sbjct: 236 FANSNP---FTA-YGSNLVSNNAVSAAFGSTP--SVQATLRAMENAGVIRTLAEPNLTAI 289

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTVLSPGRIGLRIQTE 335
           SG+SA+F +GG+       S    T V T       +G+ L+FTP VLS GRI +R+ TE
Sbjct: 290 SGESATFIAGGEFPVPAGYSCDPTTHVCTTQISFKKFGISLNFTPIVLSEGRISMRVMTE 349

Query: 336 VSE-------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           VSE                 VN+  +PS + R+A+TT+E+PSGG + +AGL++   +Q  
Sbjct: 350 VSELSNENSITLSQAVSSTTVNSLTVPSIKTRRAETTLEIPSGGAMAMAGLIQQQTKQAI 409

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
            G+P L ++P+LGALFR+  +   +TE+ +  TPF+V+ V+ +DLSRPDD ++   D +A
Sbjct: 410 SGMPGLMQLPVLGALFRSRDYVNNQTELMVLVTPFVVRAVSQKDLSRPDDGFAAASDPQA 469

Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
                +N+IYG    +E  G+NY+G  GFI
Sbjct: 470 DLLGSINRIYGVPGRTE-PGRNYRGTYGFI 498


>gi|39936740|ref|NP_949016.1| type II and III secretion system protein [Rhodopseudomonas
           palustris CGA009]
 gi|192292566|ref|YP_001993171.1| type II and III secretion system protein [Rhodopseudomonas
           palustris TIE-1]
 gi|39650596|emb|CAE29119.1| putative exporter protein, cpaC [Rhodopseudomonas palustris CGA009]
 gi|192286315|gb|ACF02696.1| type II and III secretion system protein [Rhodopseudomonas
           palustris TIE-1]
          Length = 480

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/440 (36%), Positives = 259/440 (58%), Gaps = 27/440 (6%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + IS+G+ K +++ +P D++DVLV+DP  A+ VV S +  Y+ G  VGQ N++     
Sbjct: 53  NAQSISLGIGKSMVIDLPRDIKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIVFFDSA 112

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G+Q+   DI + RD+  L   L++ + ++ I+VE + D V+L+G V +  D+Q+A +L+ 
Sbjct: 113 GRQIAAYDIAVTRDLNGLRTALKQTLPNAEIQVEGLGDGVMLNGWVTSPIDAQQAYDLAV 172

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
             + +           KKV+N + + G DQV LK+T+AEV+RDI+KQ+G   S   +   
Sbjct: 173 RLVGED----------KKVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLSANMAYGT 222

Query: 226 PSKSFAADFGGKFVSEGGDF-SVKGVLDRF----SFETVLHALERATAIRTLAEPTLTAI 280
              +F  +    F   GG   S   +  +F    S    L A+E A  +RTLAEP LTAI
Sbjct: 223 AVVNF--NNSNPFTQSGGPLVSSNALTTKFGSLPSVTATLRAMESAGVVRTLAEPNLTAI 280

Query: 281 SGQSASFTSGGQHLYK---TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SG+ A+F +GG+       T ++     SVT   +G++L+FTP V++ GRI L++ TEVS
Sbjct: 281 SGEPATFLAGGEFPVPSGVTCTNGVCTPSVTFKKFGILLNFTPVVMTAGRISLKVMTEVS 340

Query: 338 E-----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           E      VI  N   +PS + R+ ++TVE+PSGG++ +AGL+++  +Q   G+P  +++P
Sbjct: 341 EVSSDNSVIISNM-SVPSIKTRRVESTVEIPSGGSLAMAGLIQEQTKQAINGMPGAAQLP 399

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           ILG LFR+  +   +TE+ +  TP++V+ VA +DLSRPDD ++   D ++     +NK+Y
Sbjct: 400 ILGTLFRSRDYINRQTELMVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSINKLY 459

Query: 453 GPKEASEVEGQNYKGAIGFI 472
           G    +E   + Y+G  GFI
Sbjct: 460 GVPGRTE-PARTYRGRFGFI 478


>gi|91977985|ref|YP_570644.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB5]
 gi|91684441|gb|ABE40743.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB5]
          Length = 480

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 160/438 (36%), Positives = 254/438 (57%), Gaps = 27/438 (6%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + +++G+ K +++ +P D++DVLV+DP  A+ VV S +  Y+ G  VGQ N++     G+
Sbjct: 55  RPLALGIGKSVVIDLPRDIKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIVFFDSTGQ 114

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           Q+   DI + RD+  +   LR+ I +++I+VE + D V+L G V T  ++Q+A +L+   
Sbjct: 115 QIAAYDIAVTRDLNGIRTALRQSIPNADIQVEGLGDGVMLIGSVATPIEAQQAADLAARL 174

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
              +           KV+N + + G DQV LK+T+AEV+RDI+KQ+G    +T S +  +
Sbjct: 175 AGDA----------SKVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVD--LTASMNYGT 222

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISG 282
                     F   GG       L        S    L A+E A  +RTLAEP LTAISG
Sbjct: 223 SVVKFSNTNPFTQSGGPLVANNALTTSFGSGPSVSATLRAMESAGVVRTLAEPNLTAISG 282

Query: 283 QSASFTSGGQHLYK---TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
           + ASF +GG+       T ++S    SVT   +GV+L+FTP VL+ GRI L++ TEVSE 
Sbjct: 283 EPASFLAGGEFPVPSGVTCTNSLCTPSVTFKKFGVLLNFTPVVLTEGRISLKVSTEVSEV 342

Query: 339 ---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                I +    +PS + R+ ++TVE+PSGG++ +AGL+++  +Q   G+P ++++PILG
Sbjct: 343 SSDNSIVIGGLSVPSIKTRRIESTVEIPSGGSLAMAGLIQEQTKQAINGLPGMTQLPILG 402

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG-P 454
            LFR+  +   +TE+ +  TP++V+ VA +DLSRPDD ++   D ++     +N+IYG P
Sbjct: 403 TLFRSRDYINRQTELMVMVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGNINRIYGVP 462

Query: 455 KEASEVEGQNYKGAIGFI 472
                   Q Y+G  GFI
Sbjct: 463 GRTG--PAQTYRGRFGFI 478


>gi|148258235|ref|YP_001242820.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
 gi|146410408|gb|ABQ38914.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
          Length = 497

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 169/480 (35%), Positives = 268/480 (55%), Gaps = 47/480 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           NP++A +       A     +D +I   + +++G+ K +++ +P D++DVLV+DP  A+ 
Sbjct: 36  NPALAPVIAADYHPAVTAAAADGQI-NARFLALGVGKSVVIDLPRDIKDVLVADPKIANA 94

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
           VV S +  Y+ G  VGQ N++     G+Q+   DI ++RD+      L++ + +S+I++E
Sbjct: 95  VVRSSQRAYIIGATVGQTNIVFFDAQGQQIAAYDIAVKRDLNGARAALKQLLPNSDIQIE 154

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
            + D++VL G   +  ++Q+A EL+                + KV+N + + G DQV LK
Sbjct: 155 GLGDSIVLSGSAASQIEAQQAGELAARLAG----------GADKVVNSITVRGRDQVMLK 204

Query: 200 VTIAEVRRDILKQIGFQHS---------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           VT+AEV+R ++KQ+G   S         +  ++S P   F A +G   VS     +  G 
Sbjct: 205 VTVAEVQRSVVKQLGIDLSGQLNYGTAVVKFANSNP---FTA-YGSNLVSNNAINASFG- 259

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT- 309
               S +  L A+E A  IRTLAEP LTAISG+SA+F +GG+       S    T V T 
Sbjct: 260 ---SSVQATLRAMENAGVIRTLAEPNLTAISGESATFIAGGEFPVPAGYSCDPTTHVCTT 316

Query: 310 ----HDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------------PVIGVNAGDMPSYR 352
                 +G+ L+FTP VL+ GRI LR+ TEVSE                 VN+  +PS +
Sbjct: 317 QISFKKFGISLNFTPVVLAEGRISLRVMTEVSELSNENSITLSQAVTSSTVNSLTVPSIK 376

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+A+TT+E+PSGG + +AGL++   +Q   G+P L ++P+LG LFR+  +   +TE+ +
Sbjct: 377 TRRAETTLEIPSGGAMAMAGLIQQQTKQAISGMPGLMQLPVLGTLFRSRDYVNNQTELMV 436

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             TPF+V+ VA +DLSRPDD ++   D +A     +N+IYG     E  G++Y+G  GFI
Sbjct: 437 LVTPFVVRAVAQKDLSRPDDGFAAASDRQADLLGSINRIYGVPGRVE-PGRSYRGTYGFI 495


>gi|209886530|ref|YP_002290387.1| type II and III secretion system protein [Oligotropha
           carboxidovorans OM5]
 gi|209874726|gb|ACI94522.1| type II and III secretion system protein [Oligotropha
           carboxidovorans OM5]
          Length = 486

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 163/445 (36%), Positives = 258/445 (57%), Gaps = 29/445 (6%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + + +G++K +++ +P DV+DVLV+DP  A+ VV S R  Y+ G +VGQ N+I    DG+
Sbjct: 49  RALRLGISKSLVVDLPRDVKDVLVADPKIANAVVRSSRRAYIIGASVGQTNIIFFDADGQ 108

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           QM   D+ + RD+  +   + + +  S+I+VE + D VVL G      ++Q+A EL+   
Sbjct: 109 QMAAYDVAVTRDLNGIRTAIHQALPQSDIQVEGLGDGVVLSGTAANQAEAQQAYELAARL 168

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG------FQHSITG 221
           +    +      + + ++N + + G DQV L+VT+AEV+R I+KQ+G      F +    
Sbjct: 169 IGGPSK------AGELIVNNIAVRGRDQVMLRVTVAEVQRSIIKQLGVDLSGSFNYGTAV 222

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                + +F A  G + V      +  G     S +  L A+E A  IRTLAEP LTAIS
Sbjct: 223 VDFNNTNTFTA-LGRRLVDNNAVSAAFGNGTVPSVKATLRAMESAGVIRTLAEPNLTAIS 281

Query: 282 GQSASFTSGGQHLYKT-------VSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           G+SA+F +GG+    T          STG    S+    +G+ L+FTP VL+ GRI LR+
Sbjct: 282 GESATFIAGGEFPIPTGITCQTAAGGSTGPCQPSIAFKKFGISLNFTPVVLTEGRISLRV 341

Query: 333 QTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            TEVSE      I V+   +PS + R+A+TT+E+PSGG++ +AGL++D  +Q   G+P L
Sbjct: 342 MTEVSEVSSDNSISVSGLTIPSIKTRRAETTLEIPSGGSMAMAGLIQDQTKQAINGLPGL 401

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
           +++P+LG LFR+  F   +TE+ +  TP++V+ VA +DLSRPDD ++   D ++     +
Sbjct: 402 AQVPVLGTLFRSRDFINNQTELMVLVTPYVVRAVAQKDLSRPDDGFASASDPQSVLLGNI 461

Query: 449 NKIYG-PKEASEVEGQNYKGAIGFI 472
            +IYG P+    V   +Y+G  GFI
Sbjct: 462 TRIYGVPRRGGPVA--SYRGKYGFI 484


>gi|27375777|ref|NP_767306.1| hypothetical protein bll0666 [Bradyrhizobium japonicum USDA 110]
 gi|27348915|dbj|BAC45931.1| bll0666 [Bradyrhizobium japonicum USDA 110]
          Length = 505

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 173/503 (34%), Positives = 286/503 (56%), Gaps = 53/503 (10%)

Query: 6   RTFFT--MMSIFLFSSNP--SVAKLP-----PIKEANAAVINISDVEIGKGKKISIGLNK 56
           RTF+   M+++ L ++    S A+ P     P++  +  V ++  +   K + +S+G+ K
Sbjct: 18  RTFWAGAMLTLGLLAAPGLVSAAEAPVGDQAPLQAPDLGVASVGTIAPAKTRFLSLGVGK 77

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
            +++ +P +V+DVLV+DP  A+ V+ S +  Y+ G  VGQ NV+    DG+Q+   DI +
Sbjct: 78  SVVIDLPREVKDVLVADPKIANAVIRSAQRAYIIGGQVGQTNVVFFTADGQQVAAYDIAV 137

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           +RD+  +   LR+ +    +++E + D+V+L G V +  ++Q+A E++   +        
Sbjct: 138 KRDLNGMRAALRQSL--PGVQIEGIGDSVMLTGSVSSPVEAQQAGEVAAKLVG------- 188

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------GPSKSF 230
               S+KV+N + + G DQV LKV + EVRRDI+KQ+G   S + ++         S  F
Sbjct: 189 ---GSEKVVNNIVVRGRDQVMLKVVVGEVRRDIVKQLGVDLSASLNAGTAVVNFNNSNPF 245

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           +   GG  VS  G   V G+    +     + A+E A  +RTLAEP+LTAISG+SA+F +
Sbjct: 246 SVS-GGPLVSSNG-LGVTGLAKGVATVNATMRAMETAGVMRTLAEPSLTAISGESATFIA 303

Query: 290 GGQ------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339
           GG+      +    V+     T +T   +G+ L+FTP VLS GRI LR+ TEVSE     
Sbjct: 304 GGEFPIPGGYACDPVTHVC-TTQITYKKFGISLNFTPVVLSEGRISLRVMTEVSELSNQN 362

Query: 340 VIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            I V             +PS + R+A+TT+E+PSGG++ +AGL++   +Q   G+P + +
Sbjct: 363 AISVTQAVSASQTSSVTIPSIQTRRAETTLEIPSGGSMAMAGLIQQQTKQAINGLPGVDQ 422

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           +PI+GALFR+  F   ETE+ +  TP++V+ VA ++LSRPDD ++   DA+     R+N+
Sbjct: 423 VPIIGALFRSQDFVNNETELMVIVTPYVVRAVAQKELSRPDDGFAPASDAQTALLGRMNR 482

Query: 451 IYG-PKEASEVEGQNYKGAIGFI 472
           +YG  +    ++G   +G  GFI
Sbjct: 483 LYGIARRVDPIDG--ARGDFGFI 503


>gi|328545279|ref|YP_004305388.1| Pilus assembly protein [polymorphum gilvum SL003B-26A1]
 gi|326415021|gb|ADZ72084.1| Pilus assembly protein [Polymorphum gilvum SL003B-26A1]
          Length = 470

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 177/450 (39%), Positives = 273/450 (60%), Gaps = 27/450 (6%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
           ++++  E    + + +GL + +++ V  DV DVLVS+P  AD VV S   +++ G   GQ
Sbjct: 36  VHVAAGERATARLLRVGLGRSVVVNVAEDVADVLVSNPEIADAVVRSKNRVFVLGNKAGQ 95

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
           AN++L G +G+++ + ++ +E D + L   L+R + +S+I  E ++  VVL G   +  D
Sbjct: 96  ANLVLFGRNGRELASFNLRVEPDTSDLSALLKRVLPNSDIHAESINGNVVLSGTAVSAAD 155

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +Q A +L+  F   SG      + +  V+N++++AG+DQ+ LKVT+AEV R ++KQ+G  
Sbjct: 156 AQSAADLATRF-GGSG------AGALPVLNMISVAGKDQIQLKVTVAEVDRSVVKQLGVN 208

Query: 217 HSIT---GSSSGPSKSFAADF----GGKFVSEGG-DFSVKGVLDRFSFETVLHALERATA 268
            S +   G+  G   S A+DF    G    + GG  F   G     +    + AL+R   
Sbjct: 209 LSGSIGIGNYRGTFNS-ASDFPVNPGITSQATGGIGFLAGGT----NVNAEIQALQRDGV 263

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           IRTLAEPTLTAISG++ASF +GG+     VS       V    +GV L FTP VLS GRI
Sbjct: 264 IRTLAEPTLTAISGENASFLAGGEFPVP-VSQDNDTIGVEFKKFGVGLDFTPVVLSGGRI 322

Query: 329 GLRIQTEVSEPVI--GVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            +R++TEVSE      V  G +   + +VR+A++TVELPSGGT+V+AGLLK+  +Q   G
Sbjct: 323 SMRVKTEVSELTNDGAVTTGGIVISALKVRRAESTVELPSGGTLVMAGLLKETYKQAVNG 382

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP L ++P+LGALF++  F R++TE+ +  TP++V PVA   L+RPD ++    DA+  F
Sbjct: 383 IPGLMQLPVLGALFKSRDFLRQQTELVVFVTPYVVTPVAANALTRPDQNFLPPSDAETVF 442

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            NR+NK++G   A +V G  Y G +G+IY+
Sbjct: 443 LNRINKLFGVSGA-KVPG-TYHGQVGYIYE 470


>gi|85713505|ref|ZP_01044495.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A]
 gi|85699409|gb|EAQ37276.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A]
          Length = 477

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 167/461 (36%), Positives = 259/461 (56%), Gaps = 53/461 (11%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + +S+G+ K +++ +P DV+DVLV+DP  A+ VV S +  Y+ G  VGQ N+I     G+
Sbjct: 32  QSLSLGIGKSVVVDLPRDVKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQ 91

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           Q+   DI + RD+  L   L++ + ++ I+V+ + D V+L G V +  ++Q+A +L+   
Sbjct: 92  QISAYDIAVTRDLNGLRAALKQLLPNAAIKVDGLGDGVMLSGWVSSPIEAQQAGDLAARL 151

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------- 218
                         +KV+N + + G DQV LKVT+AEV R I+KQ+G   S         
Sbjct: 152 AD----------GVQKVVNNIAVRGRDQVMLKVTVAEVARTIIKQMGIDLSANMNYGTAV 201

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------------SFETVLHALERA 266
           +  S+S P  +      G+ +  G + S    L               S +  L A+E A
Sbjct: 202 VNFSNSNPFTAL-----GRPLVSGNNLSGSAGLTNLLPGQAGYPGVVPSVQATLRAMESA 256

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPT 321
             IRTLAEP LTAISG+SA+F SGG+       S   AT V         +G+ L+FTP 
Sbjct: 257 GVIRTLAEPNLTAISGESATFISGGEFPIPAGYSCDPATRVCLTQIRFKKFGISLNFTPV 316

Query: 322 VLSPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           VL+ GRI LR+ TEVSE            IG N+  +PS R R+A+TT+E+PSGG++ +A
Sbjct: 317 VLTEGRISLRVMTEVSELSTENAMTITQTIG-NSLTVPSIRTRRAETTLEIPSGGSMAMA 375

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+++  +Q   G+P L+++P+LGALFR+  +   +TE+ +  TP++V+ VA +DLSRPD
Sbjct: 376 GLIQEQTKQAINGLPGLTQLPVLGALFRSRDYVNGQTELVVLVTPYVVRAVAQKDLSRPD 435

Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
           D ++   D ++     +N+IYG     E   ++Y+G  GFI
Sbjct: 436 DGFADASDPQSDLLGSINRIYGAPGRVE-PARHYRGTYGFI 475


>gi|27376550|ref|NP_768079.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 gi|27349691|dbj|BAC46704.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
          Length = 496

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 162/451 (35%), Positives = 255/451 (56%), Gaps = 46/451 (10%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +S+G+ K I++ +P D++DVLV+DP  A+ VV S +  Y+ G  VGQ N++     G+Q+
Sbjct: 62  LSLGVGKSIVIDLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSAGQQI 121

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
              DI ++RD+  +   L++ + +S+I+++ + + +VL G      ++Q+A +L+     
Sbjct: 122 AAYDIAVKRDLNGVRAALKQILPNSDIQIDGLGEGIVLTGTAANPMEAQQANDLAARLAG 181

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------IT 220
                      + KV+N + + G DQV LKVT+AEV R I+KQ+G   +         +T
Sbjct: 182 ----------GADKVVNSIVVRGRDQVMLKVTVAEVARSIVKQLGIDLTANLNYGTSVVT 231

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            S+S P  +      GK + +G   + K G     S +  L A+E A  IRTLAEP LTA
Sbjct: 232 FSNSNPFTAL-----GKNLVDGNSLTTKFGATP--SVQATLRAMETAGVIRTLAEPNLTA 284

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTVLSPGRIGLRIQT 334
           ISG+SA+F +GG+       +    T V T       +G+ L+FTP VL+ G+I LR+ T
Sbjct: 285 ISGESATFIAGGEFPVPAGYACDPTTHVCTTQISFKKFGISLNFTPVVLTEGKISLRVMT 344

Query: 335 EVSE-------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           EVSE                 VN+  +PS + R+A+T++E+PSGG + +AGL++   +Q 
Sbjct: 345 EVSELSNENAITLSQAVTSTSVNSLTVPSIKTRRAETSLEIPSGGAMAMAGLIQQQTKQA 404

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
             G+P L ++PILG LFR+  F    TE+ +  TP++V+ VA +DLSRPDD +S   D +
Sbjct: 405 VSGLPGLMQLPILGTLFRSRDFVNNATELVVIVTPYIVRAVAQKDLSRPDDGFSAPADPQ 464

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
                 +N+IYG    +E  G+NY+G  GFI
Sbjct: 465 VELLGNINRIYGVPGRTE-PGRNYRGTYGFI 494


>gi|75674499|ref|YP_316920.1| type II and III secretion system protein [Nitrobacter winogradskyi
           Nb-255]
 gi|74419369|gb|ABA03568.1| type II and III secretion system protein [Nitrobacter winogradskyi
           Nb-255]
          Length = 493

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 166/458 (36%), Positives = 258/458 (56%), Gaps = 54/458 (11%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + +S+G+ K +++ +P DV+DVLV+DP  A+ VV S +  Y+ G  VGQ N+I     G+
Sbjct: 55  QSLSLGIGKSVVVDLPRDVKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQ 114

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           Q+   DI + RD+  L   L++ + ++ I+V+ + D V+L G V    ++Q+A +L+   
Sbjct: 115 QISAYDIAVTRDLNGLRTALKQLLPNAAIKVDGLGDGVMLSGWVSNPIEAQQAGDLAARL 174

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------- 218
                        ++KV+N + + G DQV LKVT+AEV R ++KQ+G   S         
Sbjct: 175 ----------TDGAQKVVNNIAVRGRDQVMLKVTVAEVARTVIKQMGIDLSASMNYGTAV 224

Query: 219 ITGSSSGP---------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           +  +++ P         + S AA FG   V   G   V  V         L A+E A  I
Sbjct: 225 VNFTNANPFTALGRPLTNNSAAASFGSTMV---GGAPVPAV------TATLRAMESAGVI 275

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTVLS 324
           RTLAEP LTAISG+SA+F SGG+       S   AT V         +G+ L+FTP VL+
Sbjct: 276 RTLAEPNLTAISGESATFISGGEFPIPAGFSCDPATRVCLTQIRFKKFGISLNFTPVVLT 335

Query: 325 PGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            GRI LR+ TEVSE            +G N+  +PS R R+A+TT+E+PSGG++ +AGL+
Sbjct: 336 EGRISLRVMTEVSELSNENSMTLNQSVG-NSLTVPSIRTRRAETTLEIPSGGSMAMAGLI 394

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
               +Q+  G+P ++++P+LGALFR+  +   +TE+ +  TP++V+ VA +DLSRPDD +
Sbjct: 395 HQQTKQVINGLPGIAQVPVLGALFRSRDYVNGQTELMVLVTPYVVRAVAQKDLSRPDDGF 454

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
           +   D ++     +N+IYG     E   ++Y+G  GFI
Sbjct: 455 ADASDPQSDLLGSLNRIYGAPGRVE-PARHYRGTYGFI 491


>gi|90425197|ref|YP_533567.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB18]
 gi|90107211|gb|ABD89248.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB18]
          Length = 492

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 159/448 (35%), Positives = 254/448 (56%), Gaps = 37/448 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++G++K +++ +P D++DVLV+DP  A+ VV S +  Y+ G  +GQ N++     G Q+
Sbjct: 55  LALGVSKSVVIDLPRDIKDVLVADPKIANAVVRSAQRAYIIGAAIGQTNIVFFDAAGLQI 114

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFL 168
              DI + RD+  +   +++ +  ++IRVE V   +V+L G V +  ++Q+A +L+   +
Sbjct: 115 AAYDIAVTRDLNGIRAAMKQTLPGADIRVEGVGVKSVMLTGSVSSPIEAQQAGDLAARLV 174

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG------FQHSITGS 222
                          V+N + + G DQV LKVT+AEV+RDI+KQ+G        +     
Sbjct: 175 D----------GPDNVVNSIAVRGRDQVMLKVTVAEVQRDIVKQLGVDLTARMNYGTAVV 224

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           +   S  F A +G   VS     +  G     S    L A+E A  +RTLAEP LTAISG
Sbjct: 225 NFNNSNPFTA-YGSNLVSGNATTASFGGGTTPSVTATLRAMESAGVVRTLAEPNLTAISG 283

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           +SA+F +GG+       S    T V T       +G+ L+FTP V+S GRI LR+ TEVS
Sbjct: 284 ESATFVAGGEFPVPAGYSCDPVTHVCTTQISFKKFGISLNFTPVVMSEGRISLRVMTEVS 343

Query: 338 E-------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           E                  N+  +PS + R+A+TT+E+PSGG++ +AGL+++  +Q   G
Sbjct: 344 EISTDNSITLSQAVSTTTTNSITVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAMNG 403

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +P L+++P+LGALFR+  +    TE+ +  TP++V+ VA +DLSRPDD ++   D +A  
Sbjct: 404 LPGLAQLPVLGALFRSRDYVNRNTELLVLVTPYVVRAVAQKDLSRPDDGFAAASDPQADL 463

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
              +N+IYG +  +E   +NY+G  GFI
Sbjct: 464 IGNINRIYGVRGRTE-PAKNYRGTYGFI 490


>gi|299132286|ref|ZP_07025481.1| type II and III secretion system protein [Afipia sp. 1NLS2]
 gi|298592423|gb|EFI52623.1| type II and III secretion system protein [Afipia sp. 1NLS2]
          Length = 490

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 159/458 (34%), Positives = 252/458 (55%), Gaps = 53/458 (11%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + + +G++K +++ +P DV+DVLV+DP  A+ VV S R  Y+ G  VGQ N+I    D
Sbjct: 53  NARSLRLGISKSLVVDLPRDVKDVLVADPKIANAVVRSSRRAYIIGAAVGQTNIIFFDAD 112

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G+QM   D+ + RD+  +   + + +  S+I+VE + D VVL G      ++Q+A EL+ 
Sbjct: 113 GQQMAAYDVAVTRDLNGIRTAIHQALPQSDIQVEGLGDGVVLTGSAANQAEAQQAYELAA 172

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF---------- 215
             +    +      ++  V+N + + G DQV LKVT+AEV+R+I+KQ+G           
Sbjct: 173 RLIGGPSK------ANDLVVNNITVRGRDQVMLKVTVAEVQRNIVKQLGVDLSGKFSYGT 226

Query: 216 ---------QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
                    Q S  G +  P  + +  FG                   S +  L A+E A
Sbjct: 227 AVVDFNNANQFSALGHALAPDNAISTSFGSAP----------------SVKATLRAMESA 270

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHF 318
             +RTLAEP LTAISG+SA+F +GG+    T         +SS    S+    +G+ L+F
Sbjct: 271 GVVRTLAEPNLTAISGESATFIAGGEFPIPTGITCQTAAGTSSNCQPSIAFKKFGISLNF 330

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TP VL+ GRI LR+ TEVSE      + V+   +PS + R+A+TT+E+PSGG++ +AGL+
Sbjct: 331 TPVVLTEGRISLRVMTEVSEISNDNSLTVSGMTIPSIKTRRAETTLEIPSGGSMAMAGLI 390

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           ++  +Q   G+P L+++P+LG LFR+  F   +TE+ +  TP++V+ VA +DLSRPDD +
Sbjct: 391 QEQTKQAINGLPGLAQLPVLGTLFRSRDFINNQTELMVLVTPYVVRAVAQKDLSRPDDGF 450

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
           +   D +      + +IYG          +Y+G  GFI
Sbjct: 451 ASASDPQTVLLGNITRIYGVPRREGQASSSYRGKYGFI 488


>gi|323137425|ref|ZP_08072503.1| type II and III secretion system protein [Methylocystis sp. ATCC
           49242]
 gi|322397412|gb|EFX99935.1| type II and III secretion system protein [Methylocystis sp. ATCC
           49242]
          Length = 504

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 165/467 (35%), Positives = 251/467 (53%), Gaps = 50/467 (10%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           ++IS+G+ K II+ +P D  +V+V +P  AD +V S R +Y+ G + GQ  +  +   G+
Sbjct: 46  RRISMGVGKSIIVDLPRDATEVVVGNPKVADAIVRSARKLYIMGMDAGQTTIFAVDSSGR 105

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           Q+ NL+I I RD+  L   L+  +  SNI    V+D ++L G V +  ++ RAV++++ F
Sbjct: 106 QVANLEISIGRDVGELAPLLKAALPKSNITARTVNDIIILTGTVSSAGEALRAVDIAKGF 165

Query: 168 LS---------------QSGRNQYAN---SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            S               Q+  +Q      S+   V+N L I GE+QV LKVT+AEV R +
Sbjct: 166 ASRAMGGGAGGGGGVAGQASNSQVGGVGGSADGNVINALTIRGEEQVMLKVTVAEVERKV 225

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--------ETVLH 261
           +KQ+GF     G      ++      GK V E   F++   +   +            L 
Sbjct: 226 IKQLGFSAQAGG------ETILNGSWGKLVQEN-PFAINPTMSNSALIINGPNNTNATLK 278

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSVTTHD 311
           A ER    R LAEPT+TA+SG++A    GG+       S T           +  +T   
Sbjct: 279 AFERYGVSRILAEPTVTAVSGEAAKMLVGGEIAVPGSGSCTFFTNGGGQPICSPGITFKS 338

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELPSGG 366
           YGV L+F P VLS GRI L +  EV+E  +       N   +P ++ RK +T+VELPSGG
Sbjct: 339 YGVSLNFVPIVLSEGRIHLHLAAEVTEVDLQNTFTYANVA-VPGFKTRKNETSVELPSGG 397

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +I  AGLL     Q   G+P L  +PILGALFR+  + R ETE+ +  TP++V+P++ +D
Sbjct: 398 SIATAGLLTQKSSQAISGLPGLLNLPILGALFRSRDYLRNETELLVIVTPYIVRPLSAQD 457

Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           +SRPDD ++   D + +   RVN+IY  +   ++  QN+KG IGFI+
Sbjct: 458 VSRPDDGFADASDPQGWLLGRVNRIYSTRNNPQLM-QNFKGRIGFIH 503


>gi|316933039|ref|YP_004108021.1| type II and III secretion system protein [Rhodopseudomonas
           palustris DX-1]
 gi|315600753|gb|ADU43288.1| type II and III secretion system protein [Rhodopseudomonas
           palustris DX-1]
          Length = 478

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 150/437 (34%), Positives = 256/437 (58%), Gaps = 25/437 (5%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + +++G+ K +++ +P D++DVLV+DP  A+ V+ S +  Y+ G  VGQ N++     G+
Sbjct: 53  QSVALGIGKSMVIDLPRDIKDVLVADPKIANAVIRSAQRAYIIGAAVGQTNIVFFDSTGR 112

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           Q+   DI + RD+  +   L++ +  ++I+VE + + V+L+G V +  ++Q+A +L+   
Sbjct: 113 QIAAYDIAVTRDLNGIRTALKQTLPTADIQVEGLGEGVMLNGSVASPIEAQQAFDLAARL 172

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
           +             KKV+N + + G DQV LK+T+AEV+RDI+KQ+G   S   +     
Sbjct: 173 VGDD----------KKVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLSANMAYGTAV 222

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLD-RF----SFETVLHALERATAIRTLAEPTLTAISG 282
            +F  +    F   G        L  +F    S    L A+E A  +RTLAEP LTAISG
Sbjct: 223 VNF--NNTNPFTQSGSALVPNNALTTKFGSLPSVTATLRAMESAGVVRTLAEPNLTAISG 280

Query: 283 QSASFTSGGQHLYK---TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
           + A+F +GG+       T ++     SV    +G++L+FTP V++ GRI L++ TEVSE 
Sbjct: 281 EPATFLAGGEFPVPSGVTCTNGVCTPSVVFKKFGILLNFTPVVMTAGRISLKVMTEVSEV 340

Query: 339 ---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                + +N+  +PS + R+ ++T+E+PSGG++ +AGL+++  +Q   G+P  +++PILG
Sbjct: 341 SSDNAVVINSLSVPSIKTRRVESTLEIPSGGSLAMAGLIQEQTKQAINGMPGAAQLPILG 400

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
            LFR+  +   +TE+ +  TP++V+ VA +DLSRPDD ++   D ++     +NK+YG  
Sbjct: 401 TLFRSRDYINRQTELMVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSLNKLYGAP 460

Query: 456 EASEVEGQNYKGAIGFI 472
             SE   + Y+G  GFI
Sbjct: 461 GRSE-PARTYRGRFGFI 476


>gi|300021854|ref|YP_003754465.1| type II and III secretion system protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523675|gb|ADJ22144.1| type II and III secretion system protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 550

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 181/507 (35%), Positives = 267/507 (52%), Gaps = 63/507 (12%)

Query: 27  PPIKEANAAVINISDVE-IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
           P   +   +++ IS+ E +   K I IGL K ++++ P  V+DV+ S+P   D VV S  
Sbjct: 48  PEFSKNTQSIVRISESEGLPVRKSIKIGLGKSVLIEFPNGVRDVMASNPAVVDAVVLSSN 107

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
            ++L GK  GQ+N     + G+Q+  +++ ++++   LEM LRR I  S I+VE ++ T 
Sbjct: 108 RVFLLGKAPGQSNAFFFSNKGEQLALIELNVDQEGDGLEMLLRRVIPGSEIKVETLNQTA 167

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS--------------------SKKVM 185
           +L G V++  DS RA  ++  F+SQ   N  +N S                     K V+
Sbjct: 168 ILTGRVKSPSDSARASRIAAQFMSQMIANWASNVSLTSSGSGQQNKAGEVKDADDVKSVI 227

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIG-----------FQHSITGSSSGP-------- 226
           NLL +  E+QV LKVT+AEV+R +LKQ+G           F  ++   ++ P        
Sbjct: 228 NLLTVEAEEQVMLKVTVAEVKRTLLKQLGINLGGVLSSGSFSTTLLTENAFPISTAQGLG 287

Query: 227 --------SKSFAADFGGKFVS-----EGGDFSVKGVLD-----RFSFETVLHALERATA 268
                   + + AA   G+  +       G F   G++      R + ++ + ALER   
Sbjct: 288 SLPTFGVGTAASAACAVGQICAFNPGPATGAFGNSGLVSGWGNSRNNIQSAVRALERDGL 347

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           I+TLAEP LTAISG+ A F +GG+  Y T V + TG ++V    +GV L FTP VL+ GR
Sbjct: 348 IKTLAEPNLTAISGEPAEFLAGGEVPYVTGVDTQTGVSAVAFKKFGVQLAFTPVVLTEGR 407

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I L+I T VS+  I       P +  R+A T VELPSGG++ LAGL+    QQ  +G+P 
Sbjct: 408 ISLKIDTSVSD--ISQYVAGNPVFDTRQAKTVVELPSGGSLALAGLISTKTQQNIDGLPG 465

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
              IPILG LFR+  F  +E+E+ +  TP+LV+PVA + LS P D      D KA F   
Sbjct: 466 AKDIPILGTLFRSRDFQNDESELVVIVTPYLVQPVARQQLSAPTDGLYPATDLKADFLGH 525

Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +N+IYG  E     G   KG  GFI +
Sbjct: 526 LNRIYGKSEVQPSGG--LKGDYGFIVE 550


>gi|296444395|ref|ZP_06886360.1| type II and III secretion system protein [Methylosinus
           trichosporium OB3b]
 gi|296258042|gb|EFH05104.1| type II and III secretion system protein [Methylosinus
           trichosporium OB3b]
          Length = 485

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 174/493 (35%), Positives = 267/493 (54%), Gaps = 37/493 (7%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           R+L  T  T +++    S P+VA       A  +    SD +    +++++G+ K II+ 
Sbjct: 6   RHLIPTLATALALVGAGSLPAVA-------APQSWGVESDSDAIMSRRVAMGVGKSIIVD 58

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +P D  +++V +P  A+ VV S R +Y+ G   GQ  +  +   G+Q+ NL+I I RD+ 
Sbjct: 59  LPADAAEIVVGNPKVANAVVRSTRKLYIMGVETGQTTIFALDRSGRQIANLEISIGRDVG 118

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            L   L   + +SNI    V+D ++L G V +  ++QRAV++++ F ++S      ++  
Sbjct: 119 ELGPLLHAALPNSNISARTVNDAIILTGTVDSASEAQRAVDIAKGFAARSASASAQSAGG 178

Query: 182 KK----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                 V+N L I  +DQV LKVT+AEV R +LKQ+G    I+  S G  ++      G+
Sbjct: 179 SPADGLVVNALVIRTQDQVMLKVTVAEVERRVLKQLG----ISAQSGG--ETLLKGGWGQ 232

Query: 238 FVSEGGDFSVKGVLDRFSFE--------TVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            V +   F+V   L   S            L A ER    R LAEPT+TAISG+SA FT 
Sbjct: 233 LVQQN-PFAVNSALTASSLTINGNNGSTATLQAYERYGVSRVLAEPTVTAISGESAKFTV 291

Query: 290 GGQHLYKTVSSSTGATSVTT------HDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339
           GG+      SS    +++ +        YGV L+FTP VL+ GRI L + TEV+E     
Sbjct: 292 GGEIAVPGNSSCIAGSTLCSSVGIVFKPYGVSLNFTPVVLAQGRILLHLATEVTEIDYQA 351

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               N   +P ++ RK +T+VELPSGG+I  AGLL     Q   G+P L  +P+LGALFR
Sbjct: 352 AQAYNGVTVPGFKTRKNETSVELPSGGSIATAGLLTQKSDQAINGLPGLINLPVLGALFR 411

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           +  + R ETE+ I  TP++ + ++ RD++RPDD ++   D +A+   RVN++Y   +  +
Sbjct: 412 SRDYQRNETELLIVVTPYIARALSARDVTRPDDGFADASDPQAWLLGRVNRLYANPQHPQ 471

Query: 460 VEGQNYKGAIGFI 472
              Q  KG IGFI
Sbjct: 472 AAPQ-LKGRIGFI 483


>gi|146342078|ref|YP_001207126.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278]
 gi|146194884|emb|CAL78909.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. ORS278]
          Length = 492

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 162/481 (33%), Positives = 273/481 (56%), Gaps = 50/481 (10%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           NP++A +   ++ +A  +++   ++     +S+G+ K +++  P DV+DVLV+DP  A+ 
Sbjct: 32  NPALAPVKAAEDRDAPTVSVGSSKV---HYLSLGIGKSVVVDFPQDVKDVLVADPKIANA 88

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
           VV S +  Y+ G  +GQ NV+    +G+Q+   DI I+RD+  +   L + I    ++++
Sbjct: 89  VVRSAKRAYIIGAAIGQTNVVFFDGEGQQVAAYDIAIKRDLNGVRQALSQSI--PGVKID 146

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
            V D V+L G V +  ++Q+A E++   +            + KV+N + + G DQV LK
Sbjct: 147 GVGDGVILTGSVSSPVEAQQAGEIAARLVG----------GADKVVNSIVVRGRDQVMLK 196

Query: 200 VTIAEVRRDILKQIGFQHS---------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           V ++EVRR+I+KQ+G   S         +  + + P  ++     GK ++ G   S  G 
Sbjct: 197 VNVSEVRREIVKQLGIDLSASMTYGTAVVNFNQTNPFTAY-----GKSLAAGNGLSAIGG 251

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---TVSSSTG--AT 305
            +  S    + A+E A  ++TLAEP LTAISG+SA+F +GG+       +    TG  +T
Sbjct: 252 GNLSSVSATMRAMETAGVVKTLAEPNLTAISGESATFIAGGEFPVPGGYSCDPKTGLCST 311

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGD---MPSYR 352
           SV    +G+ L+FTP VLS GRI LR+ TEVSE               N+     +P+ R
Sbjct: 312 SVMFKKFGISLNFTPVVLSEGRISLRVMTEVSELSNDNAITLSYATSANSASSVTIPAIR 371

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+A+TT+E+PSGG++ +AGL+++  +Q   G+P L+++P+LG LFR+  +   ETE+ +
Sbjct: 372 TRRAETTLEIPSGGSMAMAGLIQNQTKQAINGLPGLNQLPVLGQLFRSQDYVNNETELMV 431

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG-PKEASEVEGQNYKGAIGF 471
             TP++V+ VA ++LSRPDD ++   D+++    R+N++YG   +   V GQ      GF
Sbjct: 432 LVTPYVVRAVAQKELSRPDDGFAPATDSESALLGRMNRLYGVAAKVDAVTGQ--PAGFGF 489

Query: 472 I 472
           I
Sbjct: 490 I 490


>gi|148256957|ref|YP_001241542.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
 gi|146409130|gb|ABQ37636.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
          Length = 489

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 164/480 (34%), Positives = 274/480 (57%), Gaps = 53/480 (11%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
           +L R F T  +I L + NP++A +   ++ +  V+++   ++     +S+G+ K +++  
Sbjct: 14  WLVRAFSTAAAIGL-AINPALAPVHAAEDRDTPVVSVGSSKV---HYLSLGIGKSVVVDF 69

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           P DV+DVLV+DP  A+ VV S R  Y+ G  VGQ NV+    +G+Q+   DI I+RD+  
Sbjct: 70  PQDVKDVLVADPKIANAVVRSARRAYIIGAAVGQTNVVFFDGEGQQVAAYDIAIKRDLNG 129

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           +   L + I    ++++ V D V+L G V +  ++Q+A E++   +            S 
Sbjct: 130 VRQALSQSI--PGVKIDGVGDGVILTGSVSSPVEAQQAGEIASRLVG----------GSD 177

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------ITGSSSGPSKSFAAD 233
           KV+N + + G DQV LKV ++EVRR+I+KQ+G   S         +  +++ P  ++   
Sbjct: 178 KVVNSIVVRGRDQVMLKVNVSEVRREIVKQLGIDLSASMTYGTAVVNFNNTNPFTAY--- 234

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ- 292
             GK +  G   +V G     S    + A+E A   +TLAEP LTAISG+SA+F +GG+ 
Sbjct: 235 --GKSLVNGNALNVSG-GGLSSVSATMRAMETAGVTKTLAEPNLTAISGESATFIAGGEF 291

Query: 293 ------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIG 342
                 +   T    T  TS+T   +G+ L+FTP VLS GRI LR+ TEVSE      I 
Sbjct: 292 PVPGGYNCDPTTRVCT--TSITYKKFGISLNFTPVVLSEGRISLRVMTEVSELSNDNAIT 349

Query: 343 VNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           V+            +P+ R R+A+TT+E+PSGG++ +AGL+++  +Q   G+P + ++P+
Sbjct: 350 VSYALTSTSSSSVTIPAIRTRRAETTLEIPSGGSMAMAGLIQNQTKQAINGLPGVDQLPV 409

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG LFR+  +   ETE+ +  TP++V+ VA ++L+RPDD ++   D+++    R+N++YG
Sbjct: 410 LGQLFRSKDYVNNETELMVLVTPYVVRAVAQKELARPDDGFAPATDSESALLGRMNRLYG 469


>gi|115525749|ref|YP_782660.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisA53]
 gi|115519696|gb|ABJ07680.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisA53]
          Length = 486

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 263/445 (59%), Gaps = 37/445 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++G++K +++ +P D++DVLV+DP  A  V+ S +  Y+ G +VGQ N++     G+Q+
Sbjct: 55  LALGISKSVVIDLPRDIKDVLVADPKIATAVIRSAQRAYIIGASVGQTNIVFFDAAGQQI 114

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQRAVELSETFL 168
              DI + RD+  +   L++ + +++IRVE V    V+L G V +  ++Q+A E++   L
Sbjct: 115 AAYDIAVTRDLNGIRAALKQTLPNTDIRVEGVGPKGVLLSGSVSSPVEAQQAGEVAAR-L 173

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
           ++   N         V+N + + G DQV LKVT+AEV+RDI+KQ+G   S + +      
Sbjct: 174 AEGAEN---------VVNSIAVRGRDQVMLKVTVAEVQRDIIKQMGIDLSASMTYGTAVV 224

Query: 229 SFA-----ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           +F        FG + V+  G+          +    L A+E A  +RTLAEP LTAISG+
Sbjct: 225 NFNNTNPFTAFGRQLVT--GNSLATSFGGGPTVTATLRAMESAGVVRTLAEPNLTAISGE 282

Query: 284 SASFTSGGQ------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SA+F +GG+      + Y  V+   G T +    +G+ L+FTP V++ GRI LR+ TEVS
Sbjct: 283 SATFIAGGEFPVPSGYNYDPVTH-VGTTQIAFKKFGISLNFTPVVMTEGRISLRVMTEVS 341

Query: 338 EP------VIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E        +  + GD   +PS + R+A+TT+E+PSGG++ +AGL+++  +Q   G+P +
Sbjct: 342 ELSNDNSITLTQSNGDGLTVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGM 401

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
           ++IP+LG+LFR+  +   +TE+ +  TP++V+ VA +DLSRPDD ++   D +      +
Sbjct: 402 AQIPVLGSLFRSRDYVNRQTELMVLVTPYVVRAVAQKDLSRPDDGFAAVSDPQGDLLGSI 461

Query: 449 NKIYG-PKEASEVEGQNYKGAIGFI 472
           N+IYG P +      +NY+G  GFI
Sbjct: 462 NRIYGVPGKPG--PDRNYRGTYGFI 484


>gi|254473733|ref|ZP_05087128.1| type II and III secretion system protein [Pseudovibrio sp. JE062]
 gi|211957119|gb|EEA92324.1| type II and III secretion system protein [Pseudovibrio sp. JE062]
          Length = 456

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 171/484 (35%), Positives = 280/484 (57%), Gaps = 49/484 (10%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           M++ L  + P +A      EA   V +   V++   +++++G  + I+L    +V+DVLV
Sbjct: 1   MALTLTVTAPQLATAQTNFEATVEVTSQHSVKV---RQLNVGEGRSIVLNTNEEVRDVLV 57

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           S+P  AD VV +   +++FG   GQA+++L G+ GKQ+ + ++ ++ D + L   ++R +
Sbjct: 58  SNPKIADAVVRTRNRVFVFGNETGQASLVLFGNGGKQLASFNLNVQPDPSGLIELIQRLL 117

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            +S I  ++V+++VVL G   +  ++Q+A +++  F+          +  KK++N + +A
Sbjct: 118 PNSAINADIVNESVVLSGTAISALEAQQAYDIALKFVG---------NDDKKIVNTIAVA 168

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------GPSKSFAADFG 235
            +DQV LKVT+AEV R  +KQ+G   S+ G+ S                 PS   A  F 
Sbjct: 169 EKDQVQLKVTVAEVERTTIKQLGV--SLQGALSIGALDVKFNTSPAYNINPSVVNAGLFQ 226

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G+    GG           S    + ALER   ++TLAEPTL A+SG++ASF +GG+   
Sbjct: 227 GQLPIGGG-----------SIVPTIKALERDGVMKTLAEPTLVAVSGENASFLAGGEFPI 275

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPS 350
             V+      S+    +GV L FTP VLS GRI LRI+TEVSE      V    A  + +
Sbjct: 276 P-VAYEDNKISLEFKPFGVGLDFTPVVLSEGRIKLRIKTEVSELSSEGAVNLAGAISVSA 334

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            +VR+A++T+ELPSGGT+V+AGLLK +  Q  +GIP L  +PILG +F++  +  ++TE+
Sbjct: 335 LKVRRAESTLELPSGGTLVMAGLLKHNYGQEIDGIPGLKDVPILGTMFKSRDYINKQTEL 394

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
            I  TP++V+PVA   ++RPDD+++   D    F N++++IY   +A  V+G +Y G IG
Sbjct: 395 VIFVTPYVVRPVARSQIARPDDNFAAPSDQSTIFLNQLSRIYRSTDAP-VKG-SYHGKIG 452

Query: 471 FIYK 474
           +IY+
Sbjct: 453 YIYE 456


>gi|307943145|ref|ZP_07658490.1| type II and III secretion system protein [Roseibium sp. TrichSKD4]
 gi|307773941|gb|EFO33157.1| type II and III secretion system protein [Roseibium sp. TrichSKD4]
          Length = 482

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 166/476 (34%), Positives = 271/476 (56%), Gaps = 45/476 (9%)

Query: 22  SVAKLPPIKEANAAV---INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           S+A +P    A  A    ++++  E    + +S+G+ + +I+     V DVLVS+P  AD
Sbjct: 29  SLAGVPEPAAAQGAFEKRVHVASGERVSSRLLSVGVGRSVIIDTAEAVADVLVSNPGVAD 88

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            VV +P  +++ G   GQAN++L    G+++ + ++ +E D + L   +++++  SNI  
Sbjct: 89  AVVRTPNRIFVLGNKAGQANLVLFSRTGRELASFNLRVEPDTSDLVRFIQKYVPGSNIEA 148

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           + ++  ++L G      D+QRA +L+  +     +       +  ++N++ + GEDQV L
Sbjct: 149 QSLNGNIILSGTAANAADAQRAADLAARYAGDGKK-------ATDILNMITVDGEDQVHL 201

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---GGDFSVKGVLDRFS 255
           KVT+AEV R+++KQ+G Q +      G  K    +FG  F ++       SV     R +
Sbjct: 202 KVTVAEVDREVIKQLGVQLN------GEIK--IGNFGFGFANDTSFNAGTSVAQQTTRLA 253

Query: 256 FETV---------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
            E V         + AL+R   ++TLAEPTLTAISG++ASF +GG+     +S      +
Sbjct: 254 GELVSGGTTIGAEVKALQREGIVKTLAEPTLTAISGENASFLAGGEFPIP-ISQDGNEVT 312

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVEL 362
           V    +GV L FTP VLS GRI L+I TEVSE      + +    +P+ +VR+A++T+EL
Sbjct: 313 VEFKKFGVGLDFTPIVLSGGRISLKITTEVSELSSDGAVNIGTLTIPALKVRRAESTLEL 372

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           PSGGT+V+AGLL++  +Q   G+P L  +P+LG+LF++  F R +TE+ +  TP++V P+
Sbjct: 373 PSGGTLVMAGLLQESYRQSVNGVPGLMNLPVLGSLFKSRDFLRSQTELVVFVTPYIVNPI 432

Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN----YKGAIGFIYK 474
           A   + RPD + +  +D++  F NR+NKIY         GQN    Y G +GFIYK
Sbjct: 433 AASKVQRPDKNLAPANDSETLFLNRLNKIY------RANGQNAQAPYHGQVGFIYK 482


>gi|170740621|ref|YP_001769276.1| type II and III secretion system protein [Methylobacterium sp.
           4-46]
 gi|168194895|gb|ACA16842.1| type II and III secretion system protein [Methylobacterium sp.
           4-46]
          Length = 501

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 158/463 (34%), Positives = 262/463 (56%), Gaps = 25/463 (5%)

Query: 25  KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
           K P I    A V++I   E    ++I +   + +++ +P D ++V V++P  A+ VV S 
Sbjct: 47  KAPAIA---APVLSIGPQEAEIARRIDLTQGRSLVIDLPRDAKEVFVANPKVANAVVRST 103

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
           R +++ G   G  ++ ++  +G+Q+ +LD+ + RD+  L  TL   +  +   V    D+
Sbjct: 104 RKVFIIGVENGATSIFVMDAEGRQIASLDVTVGRDLNILRQTLATSLPSARFEVRPAGDS 163

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           ++L G V +  ++Q+A++++  F+  +G       +   V+N + I G+DQV L+VT+ E
Sbjct: 164 ILLSGTVNSATEAQQALDIANAFVGIAG----GTVTRGAVINNITIRGKDQVMLRVTVVE 219

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR---FSFETVLH 261
           V R +LKQ G   S++GS SG + + A  F        G+  ++G ++     S +  L 
Sbjct: 220 VSRTVLKQFGV--SLSGSWSGLNLTNATQFALNGDRGLGNL-IEGTINGGAGASLKATLK 276

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----VTTHDYGVVLH 317
           A E+A   R LAEPTLTAISG+SA FT+GG+    +  S T A +    +T   YGVVL+
Sbjct: 277 AFEQAGVSRILAEPTLTAISGESAKFTAGGEIAVPSGLSCTTANNCIPGITFKQYGVVLN 336

Query: 318 FTPTVLSPGRIGLRIQTEVSEP--------VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           FTP VLS  RI +R+ T+V+E          IG  +  +P + +RK++TT+EL SG TI+
Sbjct: 337 FTPVVLSENRISIRVGTDVTEIDQQNAYSYNIGTTSTSVPGFTIRKSETTIELASGATIM 396

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
            AGL++   +    G+P L  +P+LGALFR+  + R+ETE+ I  TP++ K +   ++ R
Sbjct: 397 TAGLIQQKNKAAVMGLPALMNLPVLGALFRSRDYQRDETELMIMVTPYIAKAMDPGEVKR 456

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
           PDD +    D +A    R N++YG   A+ +  + Y+G  GFI
Sbjct: 457 PDDGFVDATDGQAILLGRFNRLYGVVGAAPLAPKAYRGKFGFI 499


>gi|114568970|ref|YP_755650.1| type II and III secretion system protein [Maricaulis maris MCS10]
 gi|114339432|gb|ABI64712.1| type II and III secretion system protein [Maricaulis maris MCS10]
          Length = 491

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 156/467 (33%), Positives = 260/467 (55%), Gaps = 51/467 (10%)

Query: 43  EIGKG---KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           E G G   + + + L+K  ++ +PVDV DVLV++P   + +V +PR  Y+ G  +GQ N 
Sbjct: 41  EPGNGPVSETLDLPLSKAAVVHLPVDVADVLVTNPAVVEAIVRTPRRAYIMGMGIGQTNA 100

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
                +G+ +L+LD+ +ERD++ L+ ++ RF+ ++ I VE ++D +VL G   +  D+  
Sbjct: 101 FFFDANGQLILDLDLRVERDLSPLQESIDRFLPNARIEVEAMNDHIVLSGRAPSASDADA 160

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A+ +++ ++           +   +++++++   +QV L+V I E++R I++Q+G   S 
Sbjct: 161 ALRIAQRWVD----------NPDNILSMISVEAREQVMLRVRIVEMQRTIVRQLGVNLST 210

Query: 220 TGSSS--GPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFET--------VLHALERAT 267
            G++   G   S + DF   G+F+  GG      +LD  S  T        +L A+ER  
Sbjct: 211 AGTTGEFGFGVSTSPDFSRVGRFL--GG---TSAMLDWVSGNTGGVESVSAMLQAMERVG 265

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
            +RTLAEP LTAI+G+SA+F +GG+          G   +    +GV L FTP VLS GR
Sbjct: 266 LVRTLAEPNLTAITGESANFLAGGEFPVPVGRDRDGNIIIEYKPFGVGLGFTPVVLSEGR 325

Query: 328 IGLRIQTEVSE-------------------PVIGVNAG-DMPSYRVRKADTTVELPSGGT 367
           I LRI TEVSE                    VIG   G  +P+  V +A+TTVELPSGG+
Sbjct: 326 ISLRISTEVSELTSQGSLTFQSNNVLDDDGNVIGTVPGLTIPALNVNRAETTVELPSGGS 385

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +VLAGL++++ +Q  +G+P +  +P+LG+LFR+  +  +ETE+ +  TP+LV P     L
Sbjct: 386 LVLAGLIQEETRQNLDGVPGVQNLPVLGSLFRSRDYENQETELVVLVTPYLVDPTNPNQL 445

Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
             P D +    +A    F R+N+ Y     S+   + + G +GF+++
Sbjct: 446 QTPADGFRNASEASGLLFGRINRAYS-VPGSDTGDRGWSGPVGFLFE 491


>gi|163851903|ref|YP_001639946.1| type II and III secretion system protein [Methylobacterium
           extorquens PA1]
 gi|163663508|gb|ABY30875.1| type II and III secretion system protein [Methylobacterium
           extorquens PA1]
          Length = 502

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 158/470 (33%), Positives = 250/470 (53%), Gaps = 43/470 (9%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+ I   E    +++ +   + +I+ +P D ++V V++P  A+ VV S R ++L G + G
Sbjct: 41  VLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAVVRSSRKLFLIGIDNG 100

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             ++ ++  +G+Q+  LD+ I RDI  L  +L++ +      V+ V D++VL G V +  
Sbjct: 101 ATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDVKAVGDSLVLSGSVNSTS 160

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           ++Q+A++++  F+  +     A   +  V+N L I  +DQV ++VT+ EV R +LKQ G 
Sbjct: 161 EAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMIRVTVVEVARTVLKQFGI 218

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------------LDRFSFETVLHA 262
             S   S+  P        GG F++    F + G                 FSF+  L A
Sbjct: 219 STSGNWSALNP-------LGGNFLTNNTGFPLTGSRSPDANALTASVQTGGFSFKATLRA 271

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGAT-----SVTTH 310
            E+A   R LAEPTLTAISG+SA FT+GG+           TVS  T  +     ++T  
Sbjct: 272 FEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVSQGCVVALTYK 331

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE--P------VIGVNAGDMPSYRVRKADTTVEL 362
            YGV L FTP V++  RI +RI T+V +  P       +      +P    R ++TTVEL
Sbjct: 332 PYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTTKRSSETTVEL 391

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            SG T++ AGL++   +    G+P L  +PILGALFR+  + R+ETE+ I  TP++ +P+
Sbjct: 392 ASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMIMVTPYIAQPM 451

Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             R + RPDD +    D +A    R+NKIYG      + G  Y+G +GFI
Sbjct: 452 EARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500


>gi|254561621|ref|YP_003068716.1| pilus assembly protein [Methylobacterium extorquens DM4]
 gi|254268899|emb|CAX24860.1| putative pilus assembly protein; putative precursor
           [Methylobacterium extorquens DM4]
          Length = 502

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 158/470 (33%), Positives = 250/470 (53%), Gaps = 43/470 (9%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+ I   E    +++ +   + +I+ +P D ++V V++P  A+ VV S R ++L G + G
Sbjct: 41  VLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAVVRSSRKLFLIGIDNG 100

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             ++ ++  +G+Q+  LD+ I RDI  L  +L++ +      V+ V D++VL G V +  
Sbjct: 101 ATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDVKAVGDSLVLSGSVNSTS 160

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           ++Q+A++++  F+  +     A   +  V+N L I  +DQV ++VT+ EV R +LKQ G 
Sbjct: 161 EAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMIRVTVVEVARTVLKQFGI 218

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------------LDRFSFETVLHA 262
             S   S+  P        GG F++    F + G                 FSF+  L A
Sbjct: 219 STSGNWSALNP-------LGGNFLTNNTGFPLTGSRSPDANALTASVQTGGFSFKATLRA 271

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGAT-----SVTTH 310
            E+A   R LAEPTLTAISG+SA FT+GG+           TVS  T  +     ++T  
Sbjct: 272 FEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVSQGCVVALTYK 331

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE--P------VIGVNAGDMPSYRVRKADTTVEL 362
            YGV L FTP V++  RI +RI T+V +  P       +      +P    R ++TTVEL
Sbjct: 332 PYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTTKRSSETTVEL 391

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            SG T++ AGL++   +    G+P L  +PILGALFR+  + R+ETE+ I  TP++ +P+
Sbjct: 392 ASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMIMVTPYIAQPM 451

Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             R + RPDD +    D +A    R+NKIYG      + G  Y+G +GFI
Sbjct: 452 EARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500


>gi|240139026|ref|YP_002963501.1| putative pilus assembly protein; putative precursor
           [Methylobacterium extorquens AM1]
 gi|240008998|gb|ACS40224.1| putative pilus assembly protein; putative precursor
           [Methylobacterium extorquens AM1]
          Length = 502

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 158/470 (33%), Positives = 250/470 (53%), Gaps = 43/470 (9%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+ I   E    +++ +   + +I+ +P D ++V V++P  A+ VV S R ++L G + G
Sbjct: 41  VLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAVVRSSRKLFLIGIDNG 100

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             ++ ++  +G+Q+  LD+ I RDI  L  +L++ +      V+ V D++VL G V +  
Sbjct: 101 ATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDVKAVGDSLVLSGSVNSTS 160

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           ++Q+A++++  F+  +     A   +  V+N L I  +DQV ++VT+ EV R +LKQ G 
Sbjct: 161 EAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMIRVTVVEVARTVLKQFGI 218

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------------LDRFSFETVLHA 262
             S   S+  P        GG F++    F + G                 FSF+  L A
Sbjct: 219 STSGNWSALNP-------LGGNFLTNNTGFPLTGSRSPDANALTASVQTGGFSFKATLRA 271

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGAT-----SVTTH 310
            E+A   R LAEPTLTAISG+SA FT+GG+           TVS  T  +     ++T  
Sbjct: 272 FEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVSQGCVVALTYK 331

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE--P------VIGVNAGDMPSYRVRKADTTVEL 362
            YGV L FTP V++  RI +RI T+V +  P       +      +P    R ++TTVEL
Sbjct: 332 PYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTTKRSSETTVEL 391

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            SG T++ AGL++   +    G+P L  +PILGALFR+  + R+ETE+ I  TP++ +P+
Sbjct: 392 ASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMIMVTPYIAQPM 451

Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             R + RPDD +    D +A    R+NKIYG      + G  Y+G +GFI
Sbjct: 452 EARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500


>gi|188581660|ref|YP_001925105.1| type II and III secretion system protein [Methylobacterium populi
           BJ001]
 gi|179345158|gb|ACB80570.1| type II and III secretion system protein [Methylobacterium populi
           BJ001]
          Length = 502

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 161/487 (33%), Positives = 254/487 (52%), Gaps = 45/487 (9%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           S P+ A+  P     + V+ I   E    +K+ +   + +I+ +P D ++V V++P  A+
Sbjct: 26  SGPASAQ--PGLPGASPVLTIGPNETAVSRKVELSKGRSLIIDLPRDAKEVFVANPAVAN 83

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            VV S R ++L G + G  ++ ++  +G+Q+  LD+ I RDI  L  +L++ +      V
Sbjct: 84  AVVRSSRKLFLIGIDNGATSIFVMDAEGRQIAALDVTIARDINVLRQSLQQSLPSGRFDV 143

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           + V D++VL G V +  ++Q+A++++  F+  +     A   +  V+N L I  +DQV +
Sbjct: 144 KAVGDSLVLSGSVNSASEAQQALDIANAFVGIAAGGGVATRGT--VINNLTIRNKDQVMI 201

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------- 250
           +VT+ EV R +LKQ G   S   ++  P        GG   +    F + G         
Sbjct: 202 RVTVVEVARTVLKQFGISTSGNWAALNP-------LGGNVFTNNTGFPLTGSRSPDANAI 254

Query: 251 -----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTV 298
                   FSF   L A E+A   R LAEPTLTAISG+SA FT+GG+           TV
Sbjct: 255 TASVQTGGFSFRATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCAAASTV 314

Query: 299 SSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--P------VIGVNA 345
           S  T  +     ++T   YGV L FTP V++  RI +RI T+V +  P       +    
Sbjct: 315 SIGTSISQGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRP 374

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P    R ++TTVEL SG T++ AGL++   +    G+P L  +PILGALFR+  + R
Sbjct: 375 TPVPGTTRRSSETTVELASGATMMTAGLIQQKNRGAISGLPGLMNLPILGALFRSRDYQR 434

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
           +ETE+ I  TP++ +P+  R + +PDD Y    D +A    R+NKIYG      + G  Y
Sbjct: 435 DETELMIMVTPYIAQPMEARQVQKPDDGYVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAY 493

Query: 466 KGAIGFI 472
           +G +GFI
Sbjct: 494 RGRVGFI 500


>gi|218530654|ref|YP_002421470.1| type II and III secretion system protein [Methylobacterium
           chloromethanicum CM4]
 gi|218522957|gb|ACK83542.1| type II and III secretion system protein [Methylobacterium
           chloromethanicum CM4]
          Length = 499

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 151/462 (32%), Positives = 250/462 (54%), Gaps = 30/462 (6%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+ I   E    +++ +   + +I+ +P D ++V V++P  A+ VV S R ++L G + G
Sbjct: 41  VLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAVVRSSRKLFLIGIDNG 100

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             ++ ++  +G+Q+  LD+ I RDI  L  +L+  +      V+ V D++VL G V +  
Sbjct: 101 ATSIFVMDGEGRQIAALDVTIARDINVLRQSLQLSLPGGRFDVKAVGDSLVLSGSVNSTS 160

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           ++Q+A++++  F+  +     A   +  V+N L I  +DQV ++VT+ EV R +LKQ G 
Sbjct: 161 EAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMIRVTVVEVARTVLKQFGI 218

Query: 216 QHSITGSSSG-----PSKSFAAD-----FGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
             ++TG+ +      P+ +   +       G +  +G   S        S +  L A E+
Sbjct: 219 --NVTGNWAALNPLSPTGNVLTNTTPFPLTGAYSPDGNALSASIRSGGVSLQATLRAFEQ 276

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSSTGATSVTTHDYGVVLHFTP 320
           A   R LAEPTLTAISG+SA FT+GG+     +    V+ +    ++    YGV L FTP
Sbjct: 277 AGVSRILAEPTLTAISGESAKFTAGGEIPVPSNCSAGVAGAACTVALEFKPYGVSLAFTP 336

Query: 321 TVLSPGRIGLRIQTEVSE---------PVIGVN-AGDMPSYRVRKADTTVELPSGGTIVL 370
            V++  RI +R+ T+V+E            G N    +P+   R ++TTVEL SG T++ 
Sbjct: 337 IVMAENRISIRVATDVTELDRQNSYSFSFPGSNRVTPVPATTRRSSETTVELASGATMMT 396

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGL++   +    G+P L  +PILGALFR+  + R+ETE+ I  TP++ +P+  R + RP
Sbjct: 397 AGLIQQKSRASISGLPGLMNLPILGALFRSRDYQRDETELMIMVTPYIAQPMEARQVQRP 456

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
           DD +    D +A    R+NKIYG      + G  Y+G +GFI
Sbjct: 457 DDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 497


>gi|315497465|ref|YP_004086269.1| type II and iii secretion system protein [Asticcacaulis excentricus
           CB 48]
 gi|315415477|gb|ADU12118.1| type II and III secretion system protein [Asticcacaulis excentricus
           CB 48]
          Length = 476

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 151/431 (35%), Positives = 238/431 (55%), Gaps = 35/431 (8%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++ +PVD  DV VS+P  AD V+ +PR +++ G   GQ++ I     G+Q+LNL I +  
Sbjct: 62  VVDLPVDAADVFVSNPAVADAVLRTPRRIFVLGVAAGQSDAIFFDATGRQILNLQIRVGV 121

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
               L  T+++    S+++V+ V+  V+L G+V    +S+    LS  F  +        
Sbjct: 122 STDQLSDTVQKLYPQSDVQVQSVNGYVILSGVVANASESEAIQRLSVAFAEKP------- 174

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFG 235
              + ++N+L++AG+DQV+LKV I EV++  +KQ+GF  +     +G  +     A  +G
Sbjct: 175 ---ENIINMLSVAGKDQVSLKVRIVEVQKSSIKQMGFNFNGLSGQTGEVQYALQNAPTYG 231

Query: 236 GKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
               + GG   +K G  D+      L A ER   +RTLAEP L A+SG+SA F +GG+  
Sbjct: 232 TNGKALGG---MKIGYADKL-LSASLQAFERVGLVRTLAEPNLAAVSGESAKFLAGGEFP 287

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------- 347
                 + G  +V    YGV L FTP VLS G I L++ TEVSE V   N G        
Sbjct: 288 VPVAKDTQGRVTVEFKTYGVGLGFTPVVLSNGTISLKLSTEVSEIV---NTGSFSLDDTF 344

Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P   VR+A+TTVELPSGG++++AGLL+   +Q  + +P ++ IP+LGALFR+  F  E
Sbjct: 345 TIPGLSVRRAETTVELPSGGSLMIAGLLQSKYKQSIDALPGMTTIPVLGALFRSRDFLDE 404

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK-----EASEVE 461
           +TE+ +  TP+++   +      P D++ V  D ++ F  R+NK    K     EA  + 
Sbjct: 405 QTEMVVIVTPYIISAKSPDAFQTPADNFQVASDLESVFLGRLNKSVRAKRGEVAEAPPLA 464

Query: 462 GQNYKGAIGFI 472
           G +Y+  IG++
Sbjct: 465 G-SYQAPIGYV 474


>gi|170750189|ref|YP_001756449.1| type II and III secretion system protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656711|gb|ACB25766.1| type II and III secretion system protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 546

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 159/505 (31%), Positives = 257/505 (50%), Gaps = 73/505 (14%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A V+ +   E    +++ +   + +I+ +P D ++V V++P  A+ VV S R +++ G  
Sbjct: 51  APVLTVGAAEANTTRRVELTAGRSVIVDLPRDAKEVFVANPAVANAVVRSTRKVFVIGMA 110

Query: 94  VGQANVILIGHDGKQMLNLDILIERDI--AHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G  ++ ++  +G+Q+  LD+ + RD+    L   L + I      V     +V+L G V
Sbjct: 111 DGATSIFIMDAEGRQIAALDVTVARDLNLGTLRELLSQSIPGGRFDVRSSGASVLLSGAV 170

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANS----------SSKKVMNLLNIAGEDQVTLKVT 201
            +  D+Q+A++++  F+   G      +          S   V+N L I  +DQV L+VT
Sbjct: 171 NSSSDAQQAIDIANAFVGLGGGGAAGPAGAASGGVAAGSRGAVINNLTIRNKDQVMLRVT 230

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------------------ 243
           + EV R++LKQ G   +   S+  P  +      G+ V  GG                  
Sbjct: 231 VVEVSRNVLKQFGINMAGNWSALNPVGNL-----GQTVVNGGTAAATQVPAYLPNVITNN 285

Query: 244 ---------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                            SV+G    FS +  L A E+A   R LAEPTLTAISG++A F 
Sbjct: 286 LPFPINTNTPSGNLIQASVQG--GGFSLQATLKAFEQAGVSRILAEPTLTAISGEAAKFL 343

Query: 289 SGGQHLYKTVSSSTGATS------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--- 339
           +GG+  +   +S+T A        +T   YGV L FTPTVL+  RI +R+ T+V+E    
Sbjct: 344 AGGE--FAVPASATCAVGGVCSPGITYKPYGVALSFTPTVLADNRISIRVATDVTEIDTQ 401

Query: 340 -----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                VIG  +  +P  RVR+++TTVELPSGG ++ AGL++   +Q   G+P L  +PIL
Sbjct: 402 QSFSYVIGNTSVAVPGTRVRRSETTVELPSGGVMMTAGLIQQFNKQAIAGLPGLINLPIL 461

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
           GALFR+  + R+ETE+ I  TP++ +P+  + +SRPDD++    D +     ++N+IYG 
Sbjct: 462 GALFRSRDYQRQETELMIMCTPYIARPMEPKQVSRPDDNFVDASDGQTVLLGQINRIYGK 521

Query: 455 KEASEVE-----GQNYKGAIGFIYK 474
                       G+ Y+G +GFI +
Sbjct: 522 VAPPGATAAAPLGRAYRGRVGFIVE 546


>gi|329890996|ref|ZP_08269339.1| bacterial type II and III secretion system family protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328846297|gb|EGF95861.1| bacterial type II and III secretion system family protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 522

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 141/475 (29%), Positives = 251/475 (52%), Gaps = 70/475 (14%)

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           + +P D +DV++S+P  A+ ++HSPR + + G   G+ + + +   G+ +L L + ++  
Sbjct: 58  VDLPADARDVIISNPAVAEAMLHSPRRITMIGLAGGETDAVFLDASGRTILALRVRVDAG 117

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           ++ L+ TL R    SN+R E V+D+++L G+  +  +++RA +++  F+S          
Sbjct: 118 VSALQDTLARVAPGSNVRAEAVNDSIILTGVAASPLEAERAAQVARAFVS---------- 167

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ-----------IGFQHSITGSSS--GP 226
           + +KVMN++ +AG DQVTLKV + EV+R+ +KQ           +G    + G+S+  G 
Sbjct: 168 APEKVMNMIAVAGSDQVTLKVRVVEVQRNAIKQLGFDTQAVIGRVGDTQWLLGNSATWGV 227

Query: 227 SKSFAADFGGKFVSEG-----------GDFSVKGVL----------DRFSFET------- 258
           + SF     G    +            G    +G +          D  +++T       
Sbjct: 228 NGSFLGGLAGGIARDTTKNFQMQVPCVGPGWPEGAMCPVTVDGSPGDPSNWDTAKPGTGP 287

Query: 259 ----------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                     +L A ER   +RTLAEP LT+++G++ASF +GG+          G  +V 
Sbjct: 288 GSDGLNKGEAMLKAFERVGLVRTLAEPNLTSVNGEAASFLAGGEFPVPAGRDREGQITVE 347

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAG-------DMPSYRVRKADTT 359
              YGV L F P VLS GRI L+++ EVSE  P  G+  G        +P   VR+++ T
Sbjct: 348 YKPYGVGLSFRPVVLSEGRISLQVKVEVSELTPNGGLTIGAGTPSSITLPGLTVRRSENT 407

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +ELPSGG++++AGLL++  +Q  + +P ++ +P+LG LFR+  +   ETE+ +   P++V
Sbjct: 408 IELPSGGSMMIAGLLQESTRQAIDALPGMTNLPVLGQLFRSRDYVMGETELVVIVEPYIV 467

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            P +   +  P D   +  DA+  FF ++N++YG    +   G  ++G +G++ +
Sbjct: 468 NPTSPDRMQTPADGLRIAQDAQTIFFGQLNQVYGSPAPAAQPGAGWRGPVGYVIE 522


>gi|114799376|ref|YP_761691.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444]
 gi|114739550|gb|ABI77675.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444]
          Length = 535

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 153/502 (30%), Positives = 256/502 (50%), Gaps = 89/502 (17%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           +++++G++K +I+ +     DV++S+P  AD VV + + +   G   GQ N ++    G 
Sbjct: 44  RRVTLGVDKSMIVDLEAPAADVVISNPEIADAVVQTAQRIIFRGIKFGQTNALIFDRAGN 103

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            +L+L+I++E D+A LE T+ R I D+ +++E  + +V+L GMV  +  S +  +L + F
Sbjct: 104 TLLDLNIMVETDLAALEETISRHIPDARVKIESFNGSVILTGMVDNLSQSDQVSQLVKAF 163

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF------------ 215
             +S     A     +++N+LN+   DQV L+V I E++R ++KQ+G             
Sbjct: 164 FPES-----AGGGELQIVNMLNVNAADQVMLEVRIVEMQRSVIKQLGINLSGATSFGELA 218

Query: 216 ---------------------QHSITGSSS--------GPSKSFAADFGGKFVSEGGDFS 246
                                +++ TG  +        GPS +  +       S    F+
Sbjct: 219 NQTLQQVFQGGLPLFFDPDSGEYNTTGQGTAVEMLQPAGPSSNTISG------SASSGFN 272

Query: 247 VKG-VLDRFSFET----------------VLHALERATAIRTLAEPTLTAISGQSASFTS 289
           V+G  L   S ET                 + A+ER   +RTLAEP + A+SG+SA F +
Sbjct: 273 VQGQALGGISLETGYTNYNNGRLQSSIGAAIDAMERVGIVRTLAEPNIVAMSGESAKFLA 332

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PV 340
           GG+       +  G  +V    YGV L FTP VLS GRI L++ TEVSE           
Sbjct: 333 GGEFPVPVGQNQNGQITVEFKPYGVGLAFTPVVLSEGRISLKVSTEVSELTSQGAFQGAA 392

Query: 341 IGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
             +  GD          +P+  VR+A++ VELPSGG++++AGL+    +Q  + +P L K
Sbjct: 393 QTITDGDGNTTIIQGATLPALSVRRAESVVELPSGGSMMMAGLISVKDRQTIDQLPGLKK 452

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           +PILG+LF++  F  EETE+ +  TP+LV       +  P D Y+   DAK  FF ++N+
Sbjct: 453 LPILGSLFQSRDFLSEETELVVMVTPYLVGATNKASMVTPADGYANASDAKTIFFGKLNE 512

Query: 451 IYGPKEASEVEGQNYKGAIGFI 472
            YG ++ + ++  +Y+  +GF+
Sbjct: 513 TYG-RDGAPIKPDDYRAPVGFM 533


>gi|302381756|ref|YP_003817579.1| type II and III secretion system protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192384|gb|ADK99955.1| type II and III secretion system protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 520

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 152/492 (30%), Positives = 254/492 (51%), Gaps = 69/492 (14%)

Query: 42  VEIGKGKK-ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           V  G G + I++       + +P D +DV+VS+P  A+  VHSPR + + G   G+ + +
Sbjct: 39  VAAGSGPRLINLPRGTSFAVDLPADARDVIVSNPAVAEANVHSPRRITVIGIAPGETDAV 98

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +   G+ +L L + ++  +  L+ TL R    + +  E V+D++VL G+V +   S++ 
Sbjct: 99  FLDAAGRSILTLRVRVDAGVTALQDTLSRVAPGAQVHAEAVNDSIVLTGLVTSAAQSEQV 158

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-- 218
            +++  F+S          + +KV+N+L IAG DQVTLKV I EV+R+ +KQ+GF  +  
Sbjct: 159 AQVARAFVS----------APEKVLNMLTIAGSDQVTLKVRIIEVQRNAIKQLGFDTAAA 208

Query: 219 -----------------------ITGSSSGPSKSFAADF------GGKFVSEG-GDFSVK 248
                                  + G S+G S++   +F      G  F ++    F+V 
Sbjct: 209 LGRVGDTQFLLSQAASFGVNGSLLGGISAGVSRNTTQNFQLQGPCGPGFPADSLCPFTVD 268

Query: 249 GVLDRFSFET-----------------VLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G  D  +++T                 ++ A ER   IRTLAEP LT+++G+SASF +GG
Sbjct: 269 GPEDASNWDTAQPGTGPGSDDLNKGNAMIKAFERVGLIRTLAEPNLTSVNGESASFLAGG 328

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAG- 346
           +    T     G  ++    YGV L F P VLS GRI L+I  EVSE      I + AG 
Sbjct: 329 EFPVPTGRDRDGNVTIEFKPYGVSLGFRPIVLSEGRISLQISAEVSELTQTGGITLGAGT 388

Query: 347 ----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
               ++    VR+   TVE+PSGG++++AGLL++  +Q  + +P L  +P+LG LFR+  
Sbjct: 389 STALNIAGLNVRRVQNTVEIPSGGSMMIAGLLQESTRQAIDSLPGLGGLPVLGQLFRSRD 448

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           +   ETE+ +   P++V P +   L  P D   +  DA+  FF ++N+ YG    ++   
Sbjct: 449 YLSGETELVVIVEPYIVTPTSPNRLQTPADGLRIATDAQTIFFGQLNQAYGSPAPTDTAS 508

Query: 463 QNYKGAIGFIYK 474
             ++G +G++ +
Sbjct: 509 AGWQGPVGYVIE 520


>gi|83859357|ref|ZP_00952878.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633]
 gi|83852804|gb|EAP90657.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633]
          Length = 529

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 155/501 (30%), Positives = 262/501 (52%), Gaps = 83/501 (16%)

Query: 43  EIGKG---KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           E G G   + + + L +  ++ +P D  DV++++   A  VV + R  ++ G+ VG+ N+
Sbjct: 43  EPGAGPASESLQLPLGQAAVIHLPEDAADVVIANDEVASAVVRTTRRAFVMGQAVGRTNI 102

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
                DG  +L+L++ +ERDIA L+  L RF+ +  I+ E ++  +VL G V +   +  
Sbjct: 103 FFFNADGGLILDLNVRVERDIAALQDALDRFVPEGRIQAESMNANIVLSGQVPSAAAADT 162

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A+++++ ++           + ++V++ L + G DQVTL+V I E+ R +++Q+G   ++
Sbjct: 163 ALQVAQRWVD----------TPEQVVSFLTVEGRDQVTLQVRIVEMERTLVRQLGV--NL 210

Query: 220 TGSSS----GPSKSFAA--DFG-----------------GKFVSEGGDFS---------- 246
           +G  +     P+   AA  D G                 G+F +  G  +          
Sbjct: 211 SGEQAFGEFTPTVRTAATNDRGDPLFDQNGAPIYEVYQQGRFQNSAGWGTSNAFGVAGAA 270

Query: 247 -------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                        V GVL + S    L+ALER   +RTLAEP +TAISG+ A F +GG+ 
Sbjct: 271 LGGLTGTLGTQNLVDGVL-QSSISATLNALERVGLVRTLAEPNITAISGEPAQFLAGGEF 329

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----------PVIG 342
                    G  ++    +GV L FTP VLS GRI LR+ TEVSE            VI 
Sbjct: 330 PVPVGRDRDGNVTIEFKPFGVGLGFTPVVLSEGRISLRVSTEVSELSNEGAISLNSQVIT 389

Query: 343 VNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            + G+         +P+  V +A+TTVELPSGG++V+AGL++++ +Q  + +P + ++P+
Sbjct: 390 DDQGNVTGTVQGVTIPALSVNRAETTVELPSGGSMVIAGLIREETRQAMDSVPGIERMPV 449

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG+LFR+  F   ETE+ +  TP+LV P+   D+  P + ++V   A   F  R+N++Y 
Sbjct: 450 LGSLFRSRDFANNETELVVVVTPYLVDPLNPNDVESPAEGFAVSSLAAGAFLGRLNRVYA 509

Query: 454 PKEASEVEGQNYKGAIGFIYK 474
              A +VE + + G IGF+ +
Sbjct: 510 APGA-QVENRGWSGPIGFVLE 529


>gi|220922779|ref|YP_002498081.1| type II and III secretion system protein [Methylobacterium nodulans
           ORS 2060]
 gi|219947386|gb|ACL57778.1| type II and III secretion system protein [Methylobacterium nodulans
           ORS 2060]
          Length = 494

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 154/462 (33%), Positives = 246/462 (53%), Gaps = 32/462 (6%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A V+++   E    ++I +   + +++ +P D ++V V++P  A+ VV S R +++ G  
Sbjct: 40  APVLSVGPQEADISRRIDLTQGRSLVVDLPRDAKEVFVANPKVANAVVRSTRKVFIIGVE 99

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  ++ ++  +G+Q+  LD+ + RD+  L  TL   I      V    D+++L G V +
Sbjct: 100 NGATSIFVMDAEGRQIAALDVTVGRDLNVLRQTLASSIPKGRFEVRPAGDSILLSGSVNS 159

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             ++Q+A++++  F+               V+N + I G+DQV L+VT+ EV R +LKQ 
Sbjct: 160 AAEAQQAIDVANAFVGIG---GGGVPGRGAVINNITIRGKDQVMLRVTVVEVSRSVLKQF 216

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR-------FSFETVLHALERA 266
           G   +++G+ S  + +  A         GG F +   +          S    L A E+A
Sbjct: 217 GV--NLSGNWSNLNFANVA----PLALNGGSFPIGNAISGSINFGGGASLTATLKAFEQA 270

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSS---TGATSVTTHDYGVVLHF 318
              R LAEPTLTAISG+SA FT+GGQ     +L  +  S+       SVT   YGV L F
Sbjct: 271 GVSRVLAEPTLTAISGESAKFTAGGQLPVPGNLACSAPSNGVQLCTPSVTFKPYGVSLTF 330

Query: 319 TPTVLSPGRIGLRIQTEVSE--PVIGVNAG------DMPSYRVRKADTTVELPSGGTIVL 370
           TP VLS  RI +R+ T+V+E  P   +N         +P + VR ++TTVEL SG T++ 
Sbjct: 331 TPVVLSENRISIRVGTDVTEIDPQNSMNINFSGTTTAIPGFTVRTSETTVELASGATMMT 390

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGL++   +    G+P L  +PILGALFR+  + R+ETE+ I  TP++ K +   ++ RP
Sbjct: 391 AGLIQQRNRAAITGLPALMNLPILGALFRSRDYQRDETELMIMVTPYIAKAMEPAEIKRP 450

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
           DD +    D +A    R N++YG   AS +  + Y G  GFI
Sbjct: 451 DDGFVDATDGQAVLLGRFNRLYGVVGASPLAPKAYHGRFGFI 492


>gi|329847253|ref|ZP_08262281.1| bacterial type II and III secretion system family protein
           [Asticcacaulis biprosthecum C19]
 gi|328842316|gb|EGF91885.1| bacterial type II and III secretion system family protein
           [Asticcacaulis biprosthecum C19]
          Length = 535

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/447 (32%), Positives = 230/447 (51%), Gaps = 64/447 (14%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++ +P D  DV VS+P  AD V+ +PR +++ G   GQ++ I     G+Q+LNL I +E 
Sbjct: 71  VVDLPTDAADVFVSNPAVADAVLRTPRRIFVLGVEGGQSDAIFFDAQGRQILNLSIRVEA 130

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
               L  T+ R    S + V+ ++  VVL G+ +    + +   L+ +++++        
Sbjct: 131 ATDELTDTVHRLFPTSKVEVQSLNGRVVLSGLAQNNAQADQIARLAASYVTKP------- 183

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------- 231
              + V+NL++IAG+DQVTLKV + EV+R  +KQ+G    I  ++   S S+        
Sbjct: 184 ---EDVINLMSIAGKDQVTLKVRVIEVQRSAIKQLGLSSDIVYNNGSQSYSYGRGNTYGT 240

Query: 232 --ADFGGKFVSEGGDFSVKG--------------------VLDRF--------------- 254
               +GG+ +  G +  V                      V++R                
Sbjct: 241 NGTSYGGRGLCYGQNNVVTNNFTDSNSVTDQTAVTLEDTPVVNRTLTATIGSAVNTTWRT 300

Query: 255 ----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
               S  T L A ER   IRTLAEP LTA+SG++A F +GG+          G  +V   
Sbjct: 301 LTGSSNATCLQAFERVGLIRTLAEPNLTAVSGEAAKFLAGGEFPVPVAEDDAGRITVEFK 360

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGV---NAGDM--PSYRVRKADTTVELPS 364
            +GV L FTP VLS GRI ++I TEVSE   +G    N  ++  P   VR+A+TTVE+ S
Sbjct: 361 PFGVGLGFTPVVLSEGRISMKISTEVSEITNVGAFTSNGSNLTIPGLSVRRAETTVEMQS 420

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           GG++++AGLL+   +Q  + +P ++ +PILG+LFR+  F  E+TE+ +  TP++V PV  
Sbjct: 421 GGSLMIAGLLQSKYKQSIDSLPGMTSLPILGSLFRSRDFLNEDTELVVMVTPYIVDPVHP 480

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKI 451
             L  P D+    DD    F  R+NK+
Sbjct: 481 DQLQTPADNLEFADDMSTVFMGRLNKV 507


>gi|167648152|ref|YP_001685815.1| type II and III secretion system protein [Caulobacter sp. K31]
 gi|167350582|gb|ABZ73317.1| type II and III secretion system protein [Caulobacter sp. K31]
          Length = 545

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 159/518 (30%), Positives = 255/518 (49%), Gaps = 78/518 (15%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
           P +   P +      V+ I D+     + +++   K  I+++PVDV+D+LV++P  AD V
Sbjct: 42  PRIIDTPTLAPPADQVLRI-DLTASGAQSLTLARGKSAIVELPVDVRDMLVTNPAVADAV 100

Query: 81  VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
           +  PR +Y+ G   G  + +     G+++L+L I +++D + L+ TLRR +  +NI V+ 
Sbjct: 101 LRGPRRIYVLGMGQGVTDAVFFDAAGRKILSLAIRVDQDSSALQDTLRRVLPAANIEVQS 160

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           + D+V+L GMV  + +S  A +++  F+ +             V+N+L IAG+DQV LKV
Sbjct: 161 IRDSVILTGMVANVGESTMASQIAARFVDKP----------DNVLNMLTIAGKDQVMLKV 210

Query: 201 TIAEVRRDI-----------LKQIGFQHSITGSSSG------------------------ 225
            I EV+R+I           L Q+G      G S                          
Sbjct: 211 RIVEVQRNIIKQLGVDSSAVLGQLGETQYAFGLSPSYGINGKLLGGLTGGYKADTTKQPT 270

Query: 226 ---PSKSFAADFGGKFVSEGGDFSV------------KGVLDRFSFETVLHALERATAIR 270
              P  +   D G K +    D SV             G     S + ++ A ER   +R
Sbjct: 271 LQVPCNAALPD-GAKCLQIVRDNSVYSNGDTATITDTAGSAGLNSAKGMIQAFERVGLVR 329

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           TLAEP LT +SG++  F  GG+        +TG  ++    YGV L +TP VLS GRI L
Sbjct: 330 TLAEPNLTVVSGEAGKFLVGGEFPVPVGQDATGKVTIEFKPYGVGLGYTPIVLSGGRISL 389

Query: 331 RIQTEVSE-------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           ++ TEVSE                  +   +P   VR+A+TTVELPSGG++++AGLL+  
Sbjct: 390 KLSTEVSELSSLGAFTLTTSTGTSTSSNLTVPGLTVRRAETTVELPSGGSLMIAGLLQQQ 449

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
            +Q  + +P ++ +PILGALFR+  +   ETE+ +  TP++V P   ++L  P D     
Sbjct: 450 TRQNIDALPGMTSLPILGALFRSRDYLNGETELVVIITPYIVDPTKPQNLQTPADGLQTA 509

Query: 438 DDAKAFFFNRVNKIY-GPKEASEVEGQNYKGAIGFIYK 474
            D       R+NK+   P  A+   G+ Y+G +G++ +
Sbjct: 510 SDMSTALLGRLNKVVKAPVGAN--SGRAYQGPVGYVIE 545


>gi|254418362|ref|ZP_05032086.1| Putative phospholipid-binding domain family [Brevundimonas sp.
           BAL3]
 gi|196184539|gb|EDX79515.1| Putative phospholipid-binding domain family [Brevundimonas sp.
           BAL3]
          Length = 517

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 140/474 (29%), Positives = 250/474 (52%), Gaps = 69/474 (14%)

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           + +P D +DV+V++P  A+ ++HSPR + + G   G+ + + +   G+ +L+L + ++  
Sbjct: 54  VDLPADARDVIVANPQVAEAMLHSPRRITVIGIAPGETDAVFLDAAGRTILSLRVRVDAG 113

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
            + L+ TL R +  S IR E V+D+V+L G+  +   + +A +++  F+S          
Sbjct: 114 TSALQDTLSRLVPGSQIRAEAVNDSVILSGVADSPAQAVQAAQVARAFVS---------- 163

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------------- 218
           + +KV+N+++IAG DQVTLKV + EV+R  +KQ+GF  S                     
Sbjct: 164 APEKVLNMISIAGSDQVTLKVRVVEVQRSAIKQLGFDTSAVVGQLGSTQWLLGNSATWGV 223

Query: 219 ----ITGSSSGPSKSFAADFGGKFVSEGGDFS--------VKGVLDRFSFETV------- 259
               I G S+G S+    ++  +    G  ++        V+G  D  +++T        
Sbjct: 224 NGGLIGGISAGLSRDTTKNYQMQRPCVGPGWTPGALCPVTVRGPDDASNWDTAQPGTGPG 283

Query: 260 ----------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                     + A ER   +RTLAEP LT+++G++ASF +GG+    +     G  +V  
Sbjct: 284 SNDLNKGSATVKAFERVGLLRTLAEPNLTSVNGEAASFLAGGEFPIPSGRDRDGNITVVY 343

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAG-----DMPSYRVRKADTTV 360
             YGV L F P VL  GRI L+++ EVSE      + + AG      +P   VR+++ TV
Sbjct: 344 KPYGVALSFRPVVLDAGRISLQVKVEVSELTSQGGLTIGAGTTSSVSLPGLSVRRSENTV 403

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL SGG++++AGLL+++ +Q  + +P ++ +P+LG LFR+  +   ETE+ +   P++V 
Sbjct: 404 ELSSGGSMMIAGLLQENTRQAIDALPGMTNLPVLGQLFRSRDYLNGETELVVIVEPYIVS 463

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           P +   +  P D   +  D++   F ++N+IYG    +   G  ++GA G++ +
Sbjct: 464 PTSPDRMQTPADGLRIASDSQTILFGQLNQIYGSPSPTAQSGAVWQGAAGYVIE 517


>gi|46201037|ref|ZP_00207939.1| COG4964: Flp pilus assembly protein, secretin CpaC
           [Magnetospirillum magnetotacticum MS-1]
          Length = 480

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 146/420 (34%), Positives = 234/420 (55%), Gaps = 28/420 (6%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + + + + K + L +P  V++V++ +   ADV+V SP  +++ G+ VGQ NV L+   G+
Sbjct: 51  ESMQVPVGKSVDLTLPGAVREVVIGNSDIADVMVRSPNLVHITGRAVGQTNVFLVDRAGR 110

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
            M  +D+ +  D   +   LR  + D   I VE V+D++ L G V+    ++ A  L+  
Sbjct: 111 VMRRIDLNVSIDSQAVRDALRAVLPDERAINVEAVADSLYLSGSVKNDAAARDAKMLARR 170

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------IT 220
           F+++            K++NLL +  E QV L V +AE++R +LK++GF  +      + 
Sbjct: 171 FVAEDA----------KLVNLLRVVNEQQVLLHVKVAEIQRTVLKELGFGLTANKGIPLI 220

Query: 221 GSSS-GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           GSS  G     ++  G    S    F    +    +    L+ LE    IRTL EP LTA
Sbjct: 221 GSSVLGSGSKTSSTVGLIDSSSTAIFGTATITGIGALAANLNILENQGLIRTLVEPNLTA 280

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           +SG++A+  +GG+ L   +S + GA SV    YGV+L FTPTVL PGR+ L++ TEVS  
Sbjct: 281 VSGETATMLAGGE-LPIPISQTNGAVSVEFKPYGVLLSFTPTVLDPGRLSLKMSTEVS-- 337

Query: 340 VIGVN-------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            I  N       +  +P+++VR+A +TVELPSGG+I++AGLL++DI     G+P L  +P
Sbjct: 338 AIDNNNKTAISSSISVPAFKVRRAGSTVELPSGGSIMIAGLLQNDITSNITGLPGLMDLP 397

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           +LG LFR++ F R ETE+ +  + ++V+PV    L  P+D ++   D K F   R+   Y
Sbjct: 398 VLGLLFRSNAFQRNETELVVILSAYVVRPVEQPVLGTPNDGFAPSSDLKRFLLGRLQDTY 457


>gi|83312840|ref|YP_423104.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum
           magneticum AMB-1]
 gi|82947681|dbj|BAE52545.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum
           magneticum AMB-1]
          Length = 495

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/421 (33%), Positives = 235/421 (55%), Gaps = 31/421 (7%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + + + + K I L +P  V++V++ +   ADV+V +P  +++ G+ VGQ NV L+   G+
Sbjct: 67  ESMQVPVGKSIDLPLPGAVKEVVIGNSDIADVIVRTPHMVHITGRAVGQTNVFLMDRSGR 126

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
            M  +D+ +  D   ++  LR  + +   I VE V+D++ L G V+    ++ A  ++  
Sbjct: 127 VMRRIDLAVAIDSQAVKDALRAVLPEERAITVEAVADSLYLSGSVKNDGAARDAKMVARR 186

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           F++  G          K++N++ +  E QV L V +AE++R +LK++GF  +   S S P
Sbjct: 187 FVADDG----------KLVNMIRVVNEQQVLLHVKVAEIQRTVLKELGFGLTANKSISLP 236

Query: 227 SKSFAAD------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
             +  +        G    S    F    V    +     + LE    IRTL EP LTA+
Sbjct: 237 GTASLSSFTTSSTVGLIDSSSTAIFGTATVTGLGALAANFNILENQGLIRTLVEPNLTAV 296

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           SG++A+  +GG+ L   VS++ G+ SV    YGV+L FTP VL PGR+ L++ TEVS   
Sbjct: 297 SGETATMLAGGE-LPIPVSTTNGSISVEFKPYGVLLSFTPVVLDPGRLSLKMSTEVS--- 352

Query: 341 IGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
             ++  +         +P+++VR+A +TVELPSGG+I++AGLL++DI     G+P L  +
Sbjct: 353 -AIDTANKTAITTTISVPAFKVRRAGSTVELPSGGSIMIAGLLQNDITANIAGLPGLMDL 411

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P+LGALFR++ F R ETE+ +  + ++++PV   +LS P+D ++   D K F   R+   
Sbjct: 412 PVLGALFRSNAFQRNETELVVILSAYVIRPVDQPNLSTPNDGFAPSSDLKRFLLGRLQDT 471

Query: 452 Y 452
           Y
Sbjct: 472 Y 472


>gi|304320647|ref|YP_003854290.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503]
 gi|303299549|gb|ADM09148.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503]
          Length = 494

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 145/455 (31%), Positives = 238/455 (52%), Gaps = 44/455 (9%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           +++ + L K  I+++P    D++VSDP   + V+ +P+ ++L G+  GQAN         
Sbjct: 52  REVLLPLGKAAIIELPRPATDIIVSDPDIVEAVIRTPQRVFLMGREAGQANAFFFDRANN 111

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           Q+LNL+I +E+D   +   + + + ++ I VE ++  V++HG V    D+QRA E++  F
Sbjct: 112 QILNLEIRVEQDADTIRELMTKLVPNARISVESLNGNVIIHGTVDNASDAQRAGEIASRF 171

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
              +G + +        +N+L +    QV LK+ I E++R +++Q+G   +        +
Sbjct: 172 ---AGEDNF--------VNMLKVREPSQVLLKIKIVEMQRRLVRQLGIDLNGVAQVDRSA 220

Query: 228 KSFAAD--FGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
             FA    F     S GG   + S  G  D  + +      E+   ++TLAEP++ A+SG
Sbjct: 221 IEFAVQNSFAISGQSLGGINANLSTPGFGDITNLDFAFDIFEQNGLVKTLAEPSIVALSG 280

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           ++ASF +GG+      +S+ G  SVT   +GV L F P V S  RI L + TEVS+ V  
Sbjct: 281 RNASFLAGGEFPVPE-ASANGTPSVTFKPFGVQLEFQPVVYSKNRIQLTLATEVSD-VSN 338

Query: 343 VNA---------------GDM----------PSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VN                G++          P    R A TTVELPSGG++ LAGLL++D
Sbjct: 339 VNGLSIAGATQAEEDPDTGEIIEQTFEGFIVPGTVSRSAATTVELPSGGSLALAGLLQED 398

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
           I ++ +G+P L + P+LGALFR+  F  ++TE+ I ATP+LV+P  +  L+ P   Y+  
Sbjct: 399 INEVIDGVPGLKETPVLGALFRSQEFQSQQTELVIIATPYLVEPTDLAALTDPAQGYAPP 458

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
              ++    ++   YG +     + Q   G IGFI
Sbjct: 459 SPVQSVILGQLESAYGVRGRKARDAQ-LSGPIGFI 492


>gi|16127175|ref|NP_421739.1| pilus assembly protein CpaC [Caulobacter crescentus CB15]
 gi|221235976|ref|YP_002518413.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus
           NA1000]
 gi|7208425|gb|AAF40192.1|AF229646_4 CpaC [Caulobacter crescentus CB15]
 gi|13424571|gb|AAK24907.1| pilus assembly protein CpaC [Caulobacter crescentus CB15]
 gi|220965149|gb|ACL96505.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus
           NA1000]
          Length = 560

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 146/496 (29%), Positives = 247/496 (49%), Gaps = 82/496 (16%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           + +E+ KGK          I+++P +V+D+LV++P  AD V+   R +Y+ G   G  + 
Sbjct: 86  ATLELAKGKSA--------IVELPSEVRDLLVTNPQIADAVLRDKRRIYIVGLAEGTTDA 137

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
                 G+++L+L I + + +  L   L + + D+ I V  + D+VVL G VRT  +++ 
Sbjct: 138 AFFDTAGRRILSLSIRVSQPVDQLAAMLGKILPDAKITVSPIRDSVVLSGTVRTASEAES 197

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--- 216
           A  ++  F+           S +KV+N++++AG+DQV L+V I EV+R+++KQ+G     
Sbjct: 198 AARIAAQFVG----------SPEKVLNMISVAGKDQVMLQVRIVEVQRNVIKQLGVDLNA 247

Query: 217 -----------------HSITGS----------------------SSGPSKSFAADFGGK 237
                            + + GS                       +GP   + A     
Sbjct: 248 VIGQLGETQYTFGMAPGYGVNGSLLGGVTGGYKMDTTKQPVMQTPCTGPG--WTAGSLCP 305

Query: 238 FVSEGGDFSVKGVLDRF-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            V+ GG  S    +          S + ++ A ER   +RTLAEP L A+SG+S  F  G
Sbjct: 306 VVARGGGNSDTATIQSTAGDPGLNSAKGMIQAFERVGLVRTLAEPNLAAVSGESGKFLVG 365

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAG--- 346
           G+    T S ++G  ++    YGV L +TP VLS GRI L++ TEVSE   +G  +    
Sbjct: 366 GEFPVPTGSDTSGKVTIEFKPYGVGLGYTPVVLSGGRISLKLSTEVSELSSLGAFSMSTG 425

Query: 347 --------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                    +P   VR+ ++TVELPSGG+++LAGLL+   ++  + +P ++ +PILG+LF
Sbjct: 426 TSSGSTNLTVPGLSVRRVESTVELPSGGSLMLAGLLQQTTKETIDSLPGMTSMPILGSLF 485

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           R+  F   +TE+ +  TP+++ P   ++L  P D      D       R+NK+     A 
Sbjct: 486 RSRDFLNNQTELVVIITPYIIDPTRPQNLQTPADGLQFASDMGTVLLGRLNKVV-KAPAG 544

Query: 459 EVEGQNYKGAIGFIYK 474
              G+ Y+G +G++ +
Sbjct: 545 ANAGRAYQGPVGYVIE 560


>gi|254293214|ref|YP_003059237.1| type II and III secretion system protein [Hirschia baltica ATCC
           49814]
 gi|254041745|gb|ACT58540.1| type II and III secretion system protein [Hirschia baltica ATCC
           49814]
          Length = 535

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 156/497 (31%), Positives = 245/497 (49%), Gaps = 89/497 (17%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + +++  NK  +L+   DV D+LV++P  ADV+  S R + +  K  G++++I     GK
Sbjct: 56  RTLNLSQNKTAVLEFEEDVDDILVANPEIADVLARSKRRIAVLAKGKGESSIIFTNAQGK 115

Query: 108 QMLNLDILIE-RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           ++L+LD+++  + ++ L+  + +++  S I+ E V+  +VL G   ++ D+  A++L++ 
Sbjct: 116 EILSLDVIVAGQGVSELQALIEQYVPRSAIKAEFVNGAIVLAGKSPSLSDADMAIQLAQQ 175

Query: 167 F----------LSQSGRNQ------------------------------YANSSSKKVMN 186
           F          +S  G++Q                               AN S +   +
Sbjct: 176 FVVDDSPVINMISIEGKDQVLLKVRIVEMQRSVIKQLGVNLSGSMNIGELANKSVQTAYD 235

Query: 187 ------LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGP---SKSFAADFG 235
                 LL+ AGE    L+V       D     G  +S  I+G S G    S S+    G
Sbjct: 236 AVTGEVLLDAAGE---ALQVLAPAAPWDQSVSFGTSNSLGISGESLGGMSLSPSYNNYVG 292

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
            K  S  G FSV               LER   +RTLAEP LTA+SG+SA F +GG+   
Sbjct: 293 DKLQSSAG-FSV-------------DMLERIGLVRTLAEPNLTALSGESAKFLAGGEFPV 338

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----------------- 338
            +   S G   +    +GV L FTP VLS  RI +RI TEVSE                 
Sbjct: 339 PSEVDSDGEVVLEFKPFGVGLGFTPVVLSESRISMRISTEVSELTSTGGYQIGGTTYVDG 398

Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
               +   A  +P+ +VR+ADTTVE+PSGG++V+AGL+++   Q  + +P +  +P++G+
Sbjct: 399 AGNTVSTPAVVIPALKVRRADTTVEMPSGGSLVIAGLIQEQTSQAMDKVPGVGNLPVIGS 458

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           LFR+  F   ETE+ +  TP+LV P   + L  PDD Y    DAKA FF ++N++Y  + 
Sbjct: 459 LFRSREFQNNETELVVIVTPYLVDPTDPKKLRSPDDGYVAAKDAKAIFFGKMNEVYAVEG 518

Query: 457 ASEVEGQNYKGAIGFIY 473
           A   E     GA GFI+
Sbjct: 519 ADVEETAGINGA-GFIF 534


>gi|255262444|ref|ZP_05341786.1| outer membrane general secretion pathway protein, Secretin
           [Thalassiobium sp. R2A62]
 gi|255104779|gb|EET47453.1| outer membrane general secretion pathway protein, Secretin
           [Thalassiobium sp. R2A62]
          Length = 480

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 230/434 (52%), Gaps = 24/434 (5%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ +N+ ++++  V   ++ +++P  AD+   S RT+Y+ GK  G+  + L+G DG+ +
Sbjct: 58  LNVPMNRAVVVESDVPFAELSIANPGIADISTLSDRTIYVLGKLPGRTTLTLLGPDGRLI 117

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N+D+ +  DIA  +  L + +   NI V   +D +VL G+V +     RA++L+E +  
Sbjct: 118 TNVDVHVTPDIAEFKERLSQILPGENIEVRTANDGIVLSGVVSSSARLTRALDLAERY-- 175

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGP 226
                     +  +V NL+++ G  QV L+V  AE++R + K +    +I G   S++  
Sbjct: 176 ----------APDRVSNLMSVGGTQQVMLRVRFAEMQRSVRKSLSSSVNIFGTGFSTAAG 225

Query: 227 SKSFAADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           + +     GG   ++    +  G+      F  +L ALE    +RTLAEP LTA+SGQ A
Sbjct: 226 NINGVQAAGGGITTDATGAAFFGIDAGDIQFNVLLEALESKGVVRTLAEPNLTALSGQEA 285

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGV 343
            F +GG++    V+   G T+V   D+GV L F P V+    I L ++  VS  +   GV
Sbjct: 286 HFLAGGEYPVP-VAQEGGTTTVEYKDFGVELTFLPVVVDQDLINLTLKASVSSIDTTNGV 344

Query: 344 NAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             G    + ++R R+  TTVE+  G +  +AGLL+DD   L   +P L  +P+LGALFR+
Sbjct: 345 QVGSDFTIAAFRTRETSTTVEMRDGESFAIAGLLQDDFTDLNGQVPWLGDVPVLGALFRS 404

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE--AS 458
           + +NR ++E+ I  TP LV P     L+ P D      +   F F RV     P+   A 
Sbjct: 405 AEYNRSQSELVIIVTPHLVTPTRGEALALPTDRVRPPTERDLFLFGRVAASDAPQSGAAG 464

Query: 459 EVEGQNYKGAIGFI 472
           EV  Q++ G+ G++
Sbjct: 465 EVAKQDFSGSYGYV 478


>gi|77462453|ref|YP_351957.1| Outer membrane general secretion pathway protein, secretin
           [Rhodobacter sphaeroides 2.4.1]
 gi|77386871|gb|ABA78056.1| Outer membrane general secretion pathway protein, Secretin
           [Rhodobacter sphaeroides 2.4.1]
          Length = 461

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 142/443 (32%), Positives = 236/443 (53%), Gaps = 40/443 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ +N+ ++++      ++ +++P  AD+   S  ++Y+ GK  G+  + L+G DG+ +
Sbjct: 41  LNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGKAPGRTTLTLLGADGRLI 100

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N+D+ +  D+A  +  LR+ +   NI V   +D +VL G V +     RA++L+  +  
Sbjct: 101 SNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVTSTAKLDRALDLASRY-- 158

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQHSITGSSSG- 225
                     +  +V NL+++ G  QV LKV  AE++R + K +G   +  + +GS  G 
Sbjct: 159 ----------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKSLGSSIYARNGSGSVIGG 208

Query: 226 ----------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                     PS +  A  G   +S G  FSV G L+   F+ +L ALE    +RTLAEP
Sbjct: 209 TGTLLQNGIPPSGASIATSGNGALSLG--FSV-GALE---FQVLLEALESKGVVRTLAEP 262

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            LTA+SGQ A F +GG++    V+S     S+    +GV L+FTP V+   +I L I   
Sbjct: 263 NLTALSGQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVDGNQINLMINAA 321

Query: 336 VS---EPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           VS     V   ++G  + +++ R+  TTVE+  G +  +AGLL+DD + L   +P L  I
Sbjct: 322 VSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRNLNGQVPWLGDI 381

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           PILGALFR++ + R ++E+ I  TP LV P     L+ P D   +  +   F F RV   
Sbjct: 382 PILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEKDLFLFGRVT-- 439

Query: 452 YGPKEASEVEGQNYKGAIGFIYK 474
            G   A+EV  Q++ G+ G++ +
Sbjct: 440 -GRGAAAEVARQDFSGSYGYVME 461


>gi|114764946|ref|ZP_01444119.1| bacterial type II/III secretion system protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542658|gb|EAU45682.1| bacterial type II/III secretion system protein [Roseovarius sp.
           HTCC2601]
          Length = 471

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 235/450 (52%), Gaps = 32/450 (7%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V  G    +S+ +N+ ++++      ++ +++P  AD+   S RT+Y+ GK  G   + +
Sbjct: 33  VRTGTESVLSVPMNRAVVVESDRPFAELSIANPAIADISSLSDRTIYVLGKTPGTTTLTI 92

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +  +G+ + N+D+ +  D+   +  LR+ + +  I V   +D +VL G + + Q  QRA+
Sbjct: 93  LDANGRLITNVDVRVAADVTEFKERLRQILPNEPIEVRTANDGIVLSGTISSAQKLQRAL 152

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +L+E +            + ++V NL+ + G  QV LKV  AE++R + K +    S+TG
Sbjct: 153 DLAERY------------APERVSNLMTVGGVQQVMLKVRFAEMQRSVAKNLRSSLSVTG 200

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR-----FSFET-------VLHALERATAI 269
           +  G  ++  A   G  + + G+ S+    D        F +       +L ALE     
Sbjct: 201 TLFGNDETTLASETGTLIGQSGNTSINVNDDAEGAFLLGFNSGALQVGILLEALESKGIS 260

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           RTLAEP LTA+SGQ A F +GG++    VS   G T V+   +GV L+F P V+    I 
Sbjct: 261 RTLAEPNLTALSGQEARFLAGGEYPVP-VSQDDGTTIVSYKPFGVELNFVPRVVDGDLIN 319

Query: 330 LRIQTEVS--EPVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L ++  VS  +   G+  G++   ++R R+  TTVE+  G +  +AGLL+DD + L   +
Sbjct: 320 LELEAAVSSIDSSNGITTGEITIDAFRRRETSTTVEMRDGESFAIAGLLQDDFRDLNGQV 379

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P L  IP+LGALFR++ + RE++E+ I  TP LV P     L+ P D      +   F +
Sbjct: 380 PWLGDIPVLGALFRSAEYEREQSELVIIVTPHLVTPTRGEVLALPTDRVRPPTEKDLFLY 439

Query: 446 NR-VNKIYGPKE--ASEVEGQNYKGAIGFI 472
            R  +    P+   A+EV  Q++ G+ G++
Sbjct: 440 GRTASDTRRPQSGGAAEVAKQDFTGSYGYV 469


>gi|260574616|ref|ZP_05842619.1| type II and III secretion system protein [Rhodobacter sp. SW2]
 gi|259023033|gb|EEW26326.1| type II and III secretion system protein [Rhodobacter sp. SW2]
          Length = 470

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 140/450 (31%), Positives = 235/450 (52%), Gaps = 40/450 (8%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + + + LN+ ++++  V   ++ +++P  AD+   S +++Y+ GK  G+  + L+G DG+
Sbjct: 38  RALEVPLNRAVVVESDVPFAELSIANPGIADISTLSDKSIYVLGKAPGRTTLTLLGPDGR 97

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + N+++ +  D+A  +  LR+ +    I V   +D +VL G V +     RA++L+E +
Sbjct: 98  LISNVEVQVSPDVAEFKERLRQILPGELIEVRTANDGIVLSGTVSSTAKLDRALDLAERY 157

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP- 226
                       + ++V NL+++ G  QV LKV  AE++R + K +    +I GS+ G  
Sbjct: 158 ------------APERVSNLMSVGGTQQVMLKVRFAEMQRSVAKNLSASLAINGSTGGGN 205

Query: 227 ------SKSFAAD------FGGKFVSEGGDFSVKGVL------DRFSFETVLHALERATA 268
                 S  F A       F G   S+ G  + +GV           F  +L ALE    
Sbjct: 206 VGVNAGSGQFTAGGTRDGVFAG--TSQSGADNSEGVATIGFSAGSLQFAVLLEALESKGV 263

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           +RTLAEP LTA+SGQ A F +GG++    V+  +G+ SV    +GV ++FTP V+    I
Sbjct: 264 VRTLAEPNLTALSGQEAKFLAGGEYPIP-VADGSGSISVEYKPFGVEMNFTPVVVDGDII 322

Query: 329 GLRIQTEVSE---PVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L I   VS     V   NAG  + +++ R+  TTVE+  G +  +AGLL+DD + L   
Sbjct: 323 NLTINAAVSSIDSTVTVQNAGFTLNAFKRRETSTTVEMRDGESFAIAGLLQDDFRDLNGQ 382

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +P L  IPILGALFR++ + R ++E+ I  TP LV P     L+ P D   +  + + F 
Sbjct: 383 VPWLGDIPILGALFRSAEYQRAQSELVIIVTPHLVTPTRGEALALPTDRIRIPTERELFL 442

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           F + +   G     EV  Q++ G+ G++ +
Sbjct: 443 FGKTSGARG--ATGEVARQDFSGSYGYVME 470


>gi|221638316|ref|YP_002524578.1| Type II and III secretion system protein [Rhodobacter sphaeroides
           KD131]
 gi|221159097|gb|ACM00077.1| Type II and III secretion system protein precursor [Rhodobacter
           sphaeroides KD131]
          Length = 461

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/437 (30%), Positives = 232/437 (53%), Gaps = 28/437 (6%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ +N+ ++++      ++ +++P  AD+   S  ++Y+ GK  G+  + L+G DG+ +
Sbjct: 41  LNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGKAPGRTTLTLLGADGRLI 100

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N+D+ +  D+A  +  LR+ +   NI V   +D +VL G V +     RA++L+  +  
Sbjct: 101 SNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVTSTAKLDRALDLASRY-- 158

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQHSITGSSSGP 226
                     +  +V NL+++ G  QV LKV  AE++R + K +G   +  + +GS  G 
Sbjct: 159 ----------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKSLGSSIYARNGSGSVIGG 208

Query: 227 SKSFAAD----FGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           + +   +     G    + G G  S+   +    F+ +L ALE    +RTLAEP LTA+S
Sbjct: 209 TGTLLQNGIPPSGAPISTSGNGALSLGFSVGALEFQVLLEALESKGVVRTLAEPNLTALS 268

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---E 338
           GQ A F +GG++    V+S     S+    +GV L+FTP V+   +I L I   VS    
Sbjct: 269 GQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVDGNQINLMINAAVSSIDN 327

Query: 339 PVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            V   ++G  + +++ R+  TTVE+  G +  +AGLL+DD + L   +P L  IPILGAL
Sbjct: 328 TVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRNLNGQVPWLGDIPILGAL 387

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           FR++ + R ++E+ I  TP LV P     L+ P D   +  +   F F RV    G   A
Sbjct: 388 FRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEKDLFLFGRVT---GRGAA 444

Query: 458 SEVEGQNYKGAIGFIYK 474
           +EV  Q++ G+ G++ +
Sbjct: 445 AEVARQDFSGSYGYVME 461


>gi|126461331|ref|YP_001042445.1| type II and III secretion system protein [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126102995|gb|ABN75673.1| type II and III secretion system protein [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 461

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/437 (30%), Positives = 232/437 (53%), Gaps = 28/437 (6%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ +N+ ++++      ++ +++P  AD+   S  ++Y+ GK  G+  + L+G DG+ +
Sbjct: 41  LNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGKAPGRTTLTLLGADGRLI 100

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N+D+ +  D+A  +  LR+ +   NI V   +D +VL G V +     RA++L+  +  
Sbjct: 101 SNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVTSTAKLDRALDLASRY-- 158

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQHSITGSSSGP 226
                     +  +V NL+++ G  QV LKV  AE++R + K +G   +  + +GS  G 
Sbjct: 159 ----------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKSLGSSIYARNGSGSVIGG 208

Query: 227 SKSFAAD----FGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           + +   +     G    + G G  S+   +    F+ +L ALE    +RTLAEP LTA+S
Sbjct: 209 TGTLLQNGIPPSGAPISTSGNGALSLGFSVGALEFQVLLEALESKGVVRTLAEPNLTALS 268

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---E 338
           GQ A F +GG++    V+S     S+    +GV L+FTP V+   +I L I   VS    
Sbjct: 269 GQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVDGNQINLMINAAVSSIDN 327

Query: 339 PVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            V   ++G  + +++ R+  TTVE+  G +  +AGLL+DD + L   +P L  IPILGAL
Sbjct: 328 TVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRNLNGQVPWLGDIPILGAL 387

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           FR++ + R ++E+ I  TP LV P     L+ P D   +  +   F F RV    G   A
Sbjct: 388 FRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEKDLFLFGRVT---GRGAA 444

Query: 458 SEVEGQNYKGAIGFIYK 474
           +EV  Q++ G+ G++ +
Sbjct: 445 AEVARQDFSGSYGYVME 461


>gi|332560337|ref|ZP_08414659.1| Type II and III secretion system protein precursor [Rhodobacter
           sphaeroides WS8N]
 gi|332278049|gb|EGJ23364.1| Type II and III secretion system protein precursor [Rhodobacter
           sphaeroides WS8N]
          Length = 466

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/437 (30%), Positives = 232/437 (53%), Gaps = 28/437 (6%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ +N+ ++++      ++ +++P  AD+   S  ++Y+ GK  G+  + L+G DG+ +
Sbjct: 46  LNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGKAPGRTTLTLLGADGRLI 105

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N+D+ +  D+A  +  LR+ +   NI V   +D +VL G V +     RA++L+  +  
Sbjct: 106 SNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVTSTAKLDRALDLASRY-- 163

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQHSITGSSSGP 226
                     +  +V NL+++ G  QV LKV  AE++R + K +G   +  + +GS  G 
Sbjct: 164 ----------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKSLGSSIYARNGSGSVIGG 213

Query: 227 SKSFAAD----FGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           + +   +     G    + G G  S+   +    F+ +L ALE    +RTLAEP LTA+S
Sbjct: 214 TGTLLQNGIPPSGNPISTSGNGALSLGFSVGALEFQVLLEALESKGVVRTLAEPNLTALS 273

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---E 338
           GQ A F +GG++    V+S     S+    +GV L+FTP V+   +I L I   VS    
Sbjct: 274 GQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVDGNQINLMINAAVSSIDN 332

Query: 339 PVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            V   ++G  + +++ R+  TTVE+  G +  +AGLL+DD + L   +P L  IPILGAL
Sbjct: 333 TVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRNLNGQVPWLGDIPILGAL 392

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           FR++ + R ++E+ I  TP LV P     L+ P D   +  +   F F RV    G   A
Sbjct: 393 FRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEKDLFLFGRVT---GRGAA 449

Query: 458 SEVEGQNYKGAIGFIYK 474
           +EV  Q++ G+ G++ +
Sbjct: 450 AEVARQDFSGSYGYVME 466


>gi|146276361|ref|YP_001166520.1| type II and III secretion system protein [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554602|gb|ABP69215.1| type II and III secretion system protein [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 461

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 141/441 (31%), Positives = 236/441 (53%), Gaps = 36/441 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ +N+ ++++      ++ +++P  AD+   S  ++Y+ GK  G+  + L+G DG+ +
Sbjct: 41  LNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGKAPGRTTLTLLGADGRLI 100

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N+D+ +  D+A  +  LR+ +   NI V   +D +VL G V + +   RA++L+     
Sbjct: 101 SNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVTSAERLDRALDLA----- 155

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQHSITGSSSGP 226
               N+YA     +V NL+++ G  QV LKV  AE++R + K +G   +  + +GS  G 
Sbjct: 156 ----NRYA---PDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKSLGSSIYARNGSGSVIGG 208

Query: 227 SKSFAAD----FGGKFVSE-----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           + +   +     G    +      G  FSV G L+   F  +L ALE    +RTLAEP L
Sbjct: 209 TGTLLQNGIPPSGAPITTAATGALGLGFSV-GALE---FSVLLEALESKGVVRTLAEPNL 264

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TA+SGQ A F +GG++    V+S     ++    +GV L+FTP V+   +I L I   VS
Sbjct: 265 TALSGQEAKFLAGGEYPIP-VASGDEKIAIEYKPFGVELNFTPVVVDGSQINLMINAAVS 323

Query: 338 ---EPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                V   +AG  + +++ R+  TTVE+  G +  +AGLL+DD + L   +P L  IPI
Sbjct: 324 SIDNTVSLESAGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRNLNGQVPWLGDIPI 383

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LGALFR++ + R ++E+ I  TP LV P     L+ P D   +  + + F F RV    G
Sbjct: 384 LGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRIKLPSEKELFLFGRVT---G 440

Query: 454 PKEASEVEGQNYKGAIGFIYK 474
              A EV  Q++ G+ G++ +
Sbjct: 441 RGAAGEVARQDFSGSYGYVME 461


>gi|84687277|ref|ZP_01015157.1| Outer membrane general secretion pathway protein, Secretin
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84664710|gb|EAQ11194.1| Outer membrane general secretion pathway protein, Secretin
           [Rhodobacterales bacterium HTCC2654]
          Length = 474

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 229/451 (50%), Gaps = 34/451 (7%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G  + +++ +N+ ++++      ++ +++P  AD+   S RT+Y+ GK+ G+  + L+  
Sbjct: 36  GVAETLNVPMNRAVVVESDQPFAEISIANPGIADISTLSDRTIYVLGKSQGRTTLTLLAP 95

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           DG  + N+++ +  D++  +  LR+ +    I V   +D +VL G V +I    RA++L+
Sbjct: 96  DGTLISNVEVQVTPDLSEFKERLRQILPGEPIEVRTANDGIVLSGTVTSIAALDRALDLA 155

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI----GFQHSIT 220
           E +            +  KV NLL++ G  QV LKV  AE++R + K +    GF  +I 
Sbjct: 156 ERY------------APDKVSNLLSVGGTQQVMLKVRFAEMQRSVTKSLSSSLGFGTNIN 203

Query: 221 G-------SSSGPSKSFAADFGGKFVSEGGD----FSVKGVLDRFSFETVLHALERATAI 269
           G        + G   +  A   G  +S G D    F+         F  +L ALE    +
Sbjct: 204 GLGGSIGTGALGNQANLDAASAGDLISTGNDRTGAFTFGFNAGALQFAVMLEALENKGMV 263

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           RTLAEP LTA+SGQ ASF +GG++   +V  + GA  +    +GV L FTP V+    I 
Sbjct: 264 RTLAEPNLTALSGQEASFLAGGEYPIPSVQEN-GAVVIDYKPFGVELTFTPRVVDQDIIN 322

Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L++   VS     V  GD    + +++ R+  TTVE+  G +  +AGLL+DD + L   +
Sbjct: 323 LQMTASVSGLDNSVTYGDGAISVNAFKRRETSTTVEMRDGQSFAIAGLLQDDFRDLNGQV 382

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P L  +PILGALFR++ + R ++E+ I  TP LV P     L+ P D      +A  F  
Sbjct: 383 PWLGDVPILGALFRSADYERSQSELVIIVTPHLVTPTRGEALALPTDRVRPPSEADLFLR 442

Query: 446 NRVNKIYGPK--EASEVEGQNYKGAIGFIYK 474
                   P    A EV  Q++ G+ G++ +
Sbjct: 443 GNTAAPNRPTTGAAGEVARQDFTGSYGYVME 473


>gi|126725970|ref|ZP_01741812.1| Outer membrane general secretion pathway protein, Secretin
           [Rhodobacterales bacterium HTCC2150]
 gi|126705174|gb|EBA04265.1| Outer membrane general secretion pathway protein, Secretin
           [Rhodobacterales bacterium HTCC2150]
          Length = 466

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/450 (30%), Positives = 237/450 (52%), Gaps = 42/450 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ +N+ I+++      +V V++P+ AD+   S +T+Y+ GK  G+  + L+   G+ +
Sbjct: 30  LNVPMNRAIVVETETSFGEVSVANPSIADISTLSDKTIYVLGKAPGRTTLTLLDGTGRLI 89

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N+D+ +  D+A  +  L++ +    I V   +D +V+ G V +I    RA++L+     
Sbjct: 90  SNVDVHVTPDVAEFKERLQQILPGEPIEVRTANDGIVMSGTVSSIGKLDRALDLA----- 144

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI----GFQHSITGSS-- 223
               N+YA     +V NL+++ G  QV LK+  AE++R + K +     F  S+ G++  
Sbjct: 145 ----NRYA---PNRVSNLMSVGGTQQVMLKIRFAEMQRSVAKNLTGSLAFSGSLGGNAGA 197

Query: 224 SGPSKSFAADFGGKFVSEG-------------GDFSVKGVLDRFSFETVLHALERATAIR 270
           +G S++F+       + +G             G FS+        F+ +L ALE    +R
Sbjct: 198 TGASQTFSDGSNLANLYDGDSSTSATSSQDRDGLFSIGFSNGTIGFQVLLEALETKGVVR 257

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           TLAEP LTA+SGQ A F +GG++    +  + G+  +    +G+ + FTPTV+    I L
Sbjct: 258 TLAEPNLTALSGQKADFLAGGEYPTPAIDDN-GSPIIEYKPFGIEMEFTPTVVDGDLINL 316

Query: 331 RIQTEVSEPVIGVNAGDMPSYRV-----RKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           +++T VS     ++A +   + V     RKA TTVE+  G +  +AGLL+DD       +
Sbjct: 317 QLKTSVSSLDTSISAQNSAGFTVFGFKTRKASTTVEMRDGQSFAIAGLLQDDFTDQSGQV 376

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P L  +PI+GALFR+S + R+++E+ +  TP LV P     L+ P D   +  + + F F
Sbjct: 377 PWLGDVPIIGALFRSSEYERKQSELVVIVTPHLVTPTRGEALALPTDRVQIPTERELFLF 436

Query: 446 NRV---NKIYGPKEASEVEGQNYKGAIGFI 472
             V    KI G   A EV  Q++ G+ G++
Sbjct: 437 GNVAGKKKIKG--AAGEVARQDFSGSYGYV 464


>gi|260426909|ref|ZP_05780888.1| type II and III secretion system protein [Citreicella sp. SE45]
 gi|260421401|gb|EEX14652.1| type II and III secretion system protein [Citreicella sp. SE45]
          Length = 473

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 134/456 (29%), Positives = 232/456 (50%), Gaps = 34/456 (7%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           N+  V  G    +++ +N+ ++++      ++ +++P  AD+   S RT+Y+ GK  G  
Sbjct: 29  NLRVVRTGTESVLNVPMNRAVVVESDQPFAELSIANPAIADISSLSERTIYVLGKTPGTT 88

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
            + ++  +G+ + N+D+ +  D+   +  LR+ +   +I V   +D +VL G V + Q  
Sbjct: 89  TLTILDGNGRLITNVDVRVAADVTEFKERLRQILPGESIEVRTANDGIVLSGTVSSAQKL 148

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           QRA++L++ +            + ++V NL+ + G  QV LKV  AE++R + K +    
Sbjct: 149 QRALDLAQRY------------APERVSNLMTVGGVQQVMLKVRFAEMQRSVSKNLRSSL 196

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFS-------------VKGVLDRFSFETVLHALE 264
           SI G   G  +       G +++ G  +              + G         +L ALE
Sbjct: 197 SIGGPIFGEDEITIGSETGTWLNSGNSYGDAVTVADGTESALLLGFNGAIEVGILLEALE 256

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
               +RTLAEP LTA+SGQ A F +GG++    VS   G  SVT   +GV L+F PTV+ 
Sbjct: 257 SKGMVRTLAEPNLTALSGQEAKFLAGGEYPVP-VSQEDGKLSVTYKPFGVELNFVPTVID 315

Query: 325 PGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
              I L+++  VS       I  +A  + ++R R+  TTVE+  G +  +AGLL+DD + 
Sbjct: 316 GDLINLQLEAAVSSIDSSNGITTDAISIDAFRRRETSTTVEMRDGESFAIAGLLQDDFRD 375

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           +   +P +  IP+LGALFR++ + R+++E+ I  TP LV P     L+ P D      + 
Sbjct: 376 VNGQVPWIGDIPVLGALFRSAEYERQQSELVIIVTPHLVTPTRGEALALPTDRVMPPTEK 435

Query: 441 KAFFFNRV--NKIYGPKE--ASEVEGQNYKGAIGFI 472
             F F R   +    P+   A+EV  Q++ G+ G++
Sbjct: 436 DLFLFGRTSSDDARRPRTGGAAEVARQDFTGSYGYV 471


>gi|46204251|ref|ZP_00050268.2| COG4964: Flp pilus assembly protein, secretin CpaC
           [Magnetospirillum magnetotacticum MS-1]
          Length = 472

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/408 (32%), Positives = 217/408 (53%), Gaps = 51/408 (12%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G+ +++ +   + +I+ +P D ++V V++P  A+ VV S R ++L G   G  ++ ++  
Sbjct: 47  GQSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAVVRSSRKLFLIGIENGATSIFVMDA 106

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           +G+Q+  LD+ I RDI  L  +L++ +   +I V+ V D++VL G V +  ++Q+A++++
Sbjct: 107 EGRQIAALDVTIARDINVLRQSLQQSLPGRHIDVKAVGDSLVLSGGVSSASEAQQAIDIA 166

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
             F+  +       ++   V+N L I  +DQV ++VT+ EV R ++KQ G   +   S+ 
Sbjct: 167 NAFVGIA--GGAGGAARGAVINNLTIRNKDQVMIRVTVVEVARSVIKQFGISTTGNWSAL 224

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDR-------------FSFETVLHALERATAIRT 271
            P      D  G F++    F + G                 FS +  L A E+A   R 
Sbjct: 225 NP-----LDSTGNFLTNNTGFPLTGAFTPSGNALTASVRSGGFSLQATLRAFEQAGVSRI 279

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSP 325
           LAEPTLTAISG++A FT+GG+ +    + S GA       S+    YGV L FTP VL+ 
Sbjct: 280 LAEPTLTAISGEAAKFTAGGE-IPVPANCSVGAVGSACTISLVYKPYGVSLSFTPVVLAE 338

Query: 326 GRIGLRIQTEVSE----------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            RI +R+ T+V+E                PV        P+ R R ++TTVEL SG T++
Sbjct: 339 NRISIRVATDVTELDTQNSFSYNLNGRVVPV--------PATRRRNSETTVELASGATMM 390

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            AGL++   +    G+P L  +PILGALFR+  F R+E E+ I  TP 
Sbjct: 391 TAGLIQQQNKGTINGLPGLMNLPILGALFRSRDFQRDENELMILVTPI 438


>gi|94497254|ref|ZP_01303826.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
 gi|94423359|gb|EAT08388.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
          Length = 486

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 144/438 (32%), Positives = 227/438 (51%), Gaps = 39/438 (8%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
           P    NAA  ++ D  I     +S+G ++VI L  P  + DV+++DP   DV V S   +
Sbjct: 21  PTSALNAATSSMQDNAI----LLSVGGSRVINL--PAKMSDVVIADPEVVDVHVRSQNQL 74

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
           YL  K  G+  V     +GK + +  + +  +I  ++  LR  +  +NI V  ++  V+L
Sbjct: 75  YLIAKKAGETTVFATAPNGKVLFSGTVRVGNNITSIDDMLRIAMPGANIAVNTMNGMVLL 134

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G ++  +D+     L++ F+ +             V++ L +A   QV L+V IAEV +
Sbjct: 135 TGTIQAPEDAAEVERLTQAFVGKD----------VTVVSRLRMATPLQVMLQVKIAEVAK 184

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFA--------ADFGGKFVSEGGDFSVKGVL 251
           D+  +IG   +        + G+  G  + FA         DF      +GG +S+ GV 
Sbjct: 185 DVGHKIGTNFASVDRSGGKVAGNVGGGLRDFAQYNADTNSWDFTNPI--DGG-YSLGGVA 241

Query: 252 DRFSFETV--LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                +    L   E +    TLA+P LTA+SG++ASF +GG++ Y TVS+     S+  
Sbjct: 242 RILGMDIAGALDLAESSGLASTLAQPNLTALSGETASFLAGGEYPY-TVSNGLQGNSIEF 300

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             YGV L FTPTVL+ GRI LR++  VS     +NA ++P+ + R A+TTVEL SG   +
Sbjct: 301 KQYGVQLAFTPTVLADGRISLRVRPTVSSLDFSINA-NVPALKSRTAETTVELGSGQAFM 359

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           +AGLL ++       +P L  +PILG+LF++ +F R ETE+ I  TP+LVKP+   D+  
Sbjct: 360 IAGLLNNEASNNVNKVPGLGNLPILGSLFKSRQFQRNETELVIVVTPYLVKPMNASDVRL 419

Query: 430 PDDHYSVEDDAKAFFFNR 447
           P D +   D  +  F  R
Sbjct: 420 PTDGFRNADLGEGLFLQR 437


>gi|89053488|ref|YP_508939.1| type II and III secretion system protein [Jannaschia sp. CCS1]
 gi|88863037|gb|ABD53914.1| type II and III secretion system protein [Jannaschia sp. CCS1]
          Length = 466

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/460 (30%), Positives = 229/460 (49%), Gaps = 31/460 (6%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
           PI  A A  + +  VE      + + +N+ ++++  +   ++ V++P  AD+   S R++
Sbjct: 21  PISGAQAQGLRV--VEGESTGTLRVPMNRAVVVEAEMLFAELSVANPAIADIATLSERSI 78

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
           Y+ G+  G+  + L+G DG  + N++I +  D+A L   LR  I    + V   +D +VL
Sbjct: 79  YVLGRAPGRTTMTLLGADGSLIANVEIQVVPDVAELRERLREIIPGEPVEVRTANDGIVL 138

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V +     RA+EL+E +            +  ++ NL+ + G+ QV L+V  AE++R
Sbjct: 139 SGTVGSAFAVDRAMELAERY------------APGRISNLMMVGGQQQVMLQVRFAEMQR 186

Query: 208 DILKQIGFQHSI--TGSSSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFS 255
            + +++     I  TG + G S       GG     G          G   V        
Sbjct: 187 TVRQELSASLGIGSTGGNFGTSVGAGNLQGGTGFGTGNLPGGLDGRNGGIGVSFAAGGLQ 246

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
              +L ALE    +RTLAEP LTA+SG +ASF +GGQ    T S S G T++   D+GV 
Sbjct: 247 LSVLLEALESNGMVRTLAEPNLTALSGATASFLAGGQFPVPTESES-GGTTIEFVDFGVQ 305

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L FTPTV+    I L +  E+S     +     P+   R A T VE+  G +  +AGLL+
Sbjct: 306 LDFTPTVVGDHVINLALDAEISSIGEIIATTGAPAINTRNASTVVEMRDGDSFAIAGLLQ 365

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           DD       +P L  +P+LGALFR++ ++R ++E+ I  T  LV PV    L+ P D   
Sbjct: 366 DDFTNSVAEVPWLGDLPVLGALFRSASYSRSQSELVIIITAHLVSPVNGEALALPTDRVR 425

Query: 436 VEDDAKAFFFNRVNKIYGPK---EASEVEGQNYKGAIGFI 472
           +  +++ FF  +V     P+    A +V  Q++ G+ G++
Sbjct: 426 IPTESELFFQGQVTG-SSPRPGTAAGDVAQQDFSGSYGYV 464


>gi|254440636|ref|ZP_05054129.1| Putative phospholipid-binding domain family [Octadecabacter
           antarcticus 307]
 gi|198250714|gb|EDY75029.1| Putative phospholipid-binding domain family [Octadecabacter
           antarcticus 307]
          Length = 474

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/457 (30%), Positives = 230/457 (50%), Gaps = 59/457 (12%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ +N+ ++++  V   ++ +++P+ AD+   S RT+Y+ GK  G+  + L+G DG+ +
Sbjct: 41  LNVPMNRAVVVESDVPFTELSIANPSIADISSLSDRTIYVLGKEPGRTTLTLLGGDGRLI 100

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N+++ +  DIA  +  L + +   NI V   +D +VL G V +I    RA+EL+     
Sbjct: 101 TNVEVHVTPDIAEFKERLEQILPGENIEVRTANDGIVLSGTVSSIARLDRALELA----- 155

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD--------------------- 208
               N+YA     +V NL+++ G  QV L+V  AE++R                      
Sbjct: 156 ----NRYA---PDRVSNLMSVGGTQQVMLRVRFAEMQRSVSKSLSSSLALGGSTLGGDLG 208

Query: 209 -------ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
                   +   G   +++G++  P+ +   D  G F+     F+  GV        +L 
Sbjct: 209 LALGTGATVGNTGRLSTLSGAT--PANN---DNAGAFLF---GFNAGGV----EVGILLE 256

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           ALE    +RTLAEP LTA+SGQ ASF +GG++    +S    A +V    +G+ L FTP 
Sbjct: 257 ALENRGVVRTLAEPNLTALSGQEASFLAGGEYPVP-ISQDGSAITVEYKPFGISLSFTPR 315

Query: 322 VLSPGRIGLRIQTEVS--EPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           V+    I L +   VS  +P  G   N   + ++R R+  TTVE+  G +  +AGLL DD
Sbjct: 316 VIDGDIINLELHASVSSLDPTNGFSQNGFSIDAFRTRETSTTVEMRDGESFAIAGLLSDD 375

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
              L   +P    IP+LGALFR++ ++R++TE+ I  TP LV P     L+ P D     
Sbjct: 376 FVDLSGQVPWAGDIPVLGALFRSAEYSRQQTELVIIVTPHLVTPTRGDALALPTDRVRPP 435

Query: 438 DDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFI 472
            +   F F RV     P+   A EV  Q++ G+ G++
Sbjct: 436 TERDLFLFGRVTAEDAPQSGGAGEVARQDFSGSYGYV 472


>gi|149915642|ref|ZP_01904168.1| bacterial type II/III secretion system protein [Roseobacter sp.
           AzwK-3b]
 gi|149810534|gb|EDM70377.1| bacterial type II/III secretion system protein [Roseobacter sp.
           AzwK-3b]
          Length = 467

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 233/454 (51%), Gaps = 32/454 (7%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           N+  V  G  + +++ +N+ ++++  V   ++ +++P+ AD    S RT+Y+ GK  G+ 
Sbjct: 29  NLQVVRNGAARDLNVTMNRAVVVESDVPFAELSIANPSIADFSTLSDRTIYVLGKAPGRT 88

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
            + L+   G+ + N++I +  D++  +  L++ + +  I V   +D +VL G V +    
Sbjct: 89  TLTLLDDSGRLITNVEIHVSTDVSEFKERLQQILPNERIEVRTANDGIVLSGSVSSTARM 148

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           +RA+ L++ +            +  +V NL+ +AG  QV LKV  AE++R + KQ+    
Sbjct: 149 ERALSLAQRY------------APDRVSNLMVVAGNQQVMLKVRFAEMQRSVSKQL--ST 194

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFE-------TVLHALER 265
           S+   + G S + AA  G    S G +      +    +  F F+        +L ALE 
Sbjct: 195 SLAVDALGVSGNGAALAGSNLPSAGANRVGITANNNAGVAFFGFDIGSVEIGILLEALET 254

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              +RTLAEP LTA+SGQ A F +GG++    V+     TS+    +GV L+F P V+  
Sbjct: 255 KGVVRTLAEPNLTALSGQEAKFLAGGEYPVP-VAQDNNTTSIEFKPFGVELNFIPRVVDG 313

Query: 326 GRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
             I L +   VS  +P  G+N G  ++ ++R R   TTV+L  G +  +AGLL+DD +  
Sbjct: 314 DIINLEMAAAVSSIDPTNGINTGAFNVDAFRRRDTSTTVQLRDGESFAIAGLLQDDFRDT 373

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P L  +PILGALFR++ + R +TE+ I  +  LV P     L+ P D   +  +  
Sbjct: 374 NAQVPWLGDVPILGALFRSADYARAQTELVIIVSAHLVTPTRGEALALPTDRVRLPSEMD 433

Query: 442 AFFFNRV-NKIYGPKEASEVEGQNYKGAIGFIYK 474
            F   RV N       A EV  Q++ G+ G++ +
Sbjct: 434 LFLNGRVLNSNIPSGTAGEVARQDFTGSYGYVME 467


>gi|159043678|ref|YP_001532472.1| type II and III secretion system protein [Dinoroseobacter shibae
           DFL 12]
 gi|157911438|gb|ABV92871.1| type II and III secretion system protein [Dinoroseobacter shibae
           DFL 12]
          Length = 474

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 226/451 (50%), Gaps = 43/451 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + +N+ ++++  +   ++ V++P  AD+   S R++Y+ GK+ G+  + L+G DG+ +
Sbjct: 41  LQVPMNRAVVVESDIPFAELSVANPGIADIATLSDRSIYVLGKSQGRTTMTLLGADGRLI 100

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N+D+ +  DIA  +  L + +   NI V   +D VVL G   ++    RA++L++ +  
Sbjct: 101 TNVDVQVTPDIAEFKERLEQILPGENIEVRTANDGVVLSGTASSVTAMDRALDLAQRY-- 158

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                     +  +V NL++I G  QV LKV  AE++R + KQ+     +T   SG   +
Sbjct: 159 ----------APDRVSNLMSIGGSQQVMLKVRFAEMQRSVSKQL--SGGLTAIYSGTDGA 206

Query: 230 FAADFGGKFVSEGGDFSVKGV--------------------LDRFSFETVLHALERATAI 269
           F+   G   +++GG  S+ G                     +   S   +L ALE    +
Sbjct: 207 FSVGLGSGGLTDGG--SIGGANSTEFTLNPEAAGTIGLGFNIGNVSLGILLEALESKGVV 264

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           RTLAEP LT +SGQ ASF +GG++    V+   G  SV    +GV L F PTVL    I 
Sbjct: 265 RTLAEPNLTTLSGQEASFLAGGEYPIP-VADGDGGISVEYKPFGVELDFIPTVLDDDVIN 323

Query: 330 LRIQTEV----SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L +   V    S   I  ++  +  +  R+  TTV+L  G +  +AGLL+DD +     +
Sbjct: 324 LELGAAVSALDSSASIITDSLTVQGFSRRETLTTVQLRDGDSFAIAGLLEDDFRDFAGQV 383

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P L  IP+LGALFR++ + R ++E+ I  T  LV P     L  P D   +  + + F  
Sbjct: 384 PWLGDIPVLGALFRSADYARSQSELVIIVTAHLVSPTRGEALVLPTDRVRIPSEREFFLN 443

Query: 446 NRVNKIYGPKE--ASEVEGQNYKGAIGFIYK 474
             + +   P+   A EV  Q++ G+ G++ +
Sbjct: 444 GNLVREDTPRRGAAGEVAQQDFSGSYGYVLE 474


>gi|126733573|ref|ZP_01749320.1| bacterial type II/III secretion system protein [Roseobacter sp.
           CCS2]
 gi|126716439|gb|EBA13303.1| bacterial type II/III secretion system protein [Roseobacter sp.
           CCS2]
          Length = 476

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 139/453 (30%), Positives = 224/453 (49%), Gaps = 51/453 (11%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +S+ +++ ++++  V   ++ +++P  AD+   S RT+Y+ GK  G+  + L+G +G+ +
Sbjct: 42  LSVPMSRAVVVESDVPFTELSIANPGIADISSLSDRTIYVLGKEPGRTTLTLLGENGRLI 101

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N++I +  D+A  +  L + +   NI V   +D +VL G V +I    RA++L+E +  
Sbjct: 102 TNVEIHVSPDMAEFKERLTQILPGENIEVRTANDGIVLSGTVSSIARLDRALDLAERY-- 159

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI---------LKQIGF----- 215
                     + ++V NL+ + G  QV LKV  AE++R +         L  +GF     
Sbjct: 160 ----------APERVSNLMMVGGTQQVMLKVRFAEMQRSVSKALSTSVALSGLGFDDDVS 209

Query: 216 ----------QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
                     Q +I G+ SG      A+ G      G      G+L        L ALE 
Sbjct: 210 ITGGTNRTIGQSAINGALSGSVPGSNANNGAVLFGFGAGGLEVGIL--------LEALET 261

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              +R+LAEP LTA+SGQ A+F +GG++   T +   G  SV    +GV L F P V+  
Sbjct: 262 RGVVRSLAEPNLTALSGQEATFLAGGEYPVPTANDG-GTISVEFRPFGVELSFVPRVVDH 320

Query: 326 GRIGLRIQTEVS--EPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
             I L +   VS  +P  G   N   + ++  R+  TTVE+  G +  +AGLL DD   L
Sbjct: 321 DIINLELSAAVSAIDPSNGFQANGFSVDAFTRRETSTTVEMRDGESFAIAGLLSDDFTDL 380

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P +  IP+LGALFR++ + R +TE+ I  TP LV P     L+ P D      +  
Sbjct: 381 NGQLPWVGDIPVLGALFRSAEYARRQTELVIIVTPHLVSPTRGEALALPTDRVRPPTEQG 440

Query: 442 AFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFI 472
            F F +V    GP    A EV  Q++ G+ G++
Sbjct: 441 LFLFGQVANEGGPSSGGAGEVARQDFSGSYGYV 473


>gi|84501676|ref|ZP_00999848.1| bacterial type II/III secretion system protein [Oceanicola
           batsensis HTCC2597]
 gi|84390297|gb|EAQ02856.1| bacterial type II/III secretion system protein [Oceanicola
           batsensis HTCC2597]
          Length = 474

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 144/509 (28%), Positives = 243/509 (47%), Gaps = 77/509 (15%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T+ + +   LF    +    P   +A    I    V      ++++ +N+ ++++  V  
Sbjct: 2   TYSSYLRAALFGMTLATGSFPVTAQAERLTI----VNRNSESRLNVAINRAVVVESDVSF 57

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            ++ +++P  AD+   S  ++Y+ GK  G   + L+  +G+ + N+D+++  DI+  +  
Sbjct: 58  AELSIANPQIADISSLSDTSIYVLGKTPGITTLTLLDAEGRLISNVDVVVSADISEFKER 117

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           LR+ + D  I V   +D +V+ G+V + Q  QRA++L+E +            + ++V N
Sbjct: 118 LRQILPDEKIEVRTANDGIVMSGVVSSSQKLQRALDLAERY------------APERVSN 165

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
           L+++ G  QV LKV  AE++R + K +             S S AAD G  F   GG+  
Sbjct: 166 LMSVGGVQQVMLKVRFAEMQRSVSKSL-------------SASLAAD-GSIF---GGNVG 208

Query: 247 VKGVLDRFSFE---------------------------------TVLHALERATAIRTLA 273
           V G   R+S                                    +L ALE    +RTLA
Sbjct: 209 VSGGTGRYSNAGNQGNGLGGNLPTPNTNSGATLLGFNAGAVQVGVLLEALEAKGVVRTLA 268

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           EP LTA+SGQ A F +GG++    V+   G  +V    +GV ++F P V+    I L +Q
Sbjct: 269 EPNLTALSGQEAKFLAGGEYPVP-VAQDGGTVTVEFKPFGVEMNFIPRVVDDDIINLELQ 327

Query: 334 TEVS--EPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
             VS  +P  G  +NA  + ++  R+  TTVEL  G +  +AGLL+DD +     +P L 
Sbjct: 328 AAVSAIDPNNGFELNAFRIDAFTRRETSTTVELRDGDSFAVAGLLQDDFRDTNSQVPWLG 387

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR-- 447
            IP++GALFR++ + R ++E+ I  T  LV P     L+ P D      +   F F R  
Sbjct: 388 DIPVIGALFRSADYQRNQSELVIIITAHLVSPTRGEALALPTDRVKPPSEKDLFLFGRTA 447

Query: 448 --VNKIYGPKEASEVEGQNYKGAIGFIYK 474
               K+ G   A EV  Q++ G+ G++ +
Sbjct: 448 KDTRKLRGA--AKEVAKQDFNGSYGYVME 474


>gi|302037439|ref|YP_003797761.1| putative pilus assembly protein CpaC [Candidatus Nitrospira
           defluvii]
 gi|300605503|emb|CBK41836.1| putative Pilus assembly protein CpaC [Candidatus Nitrospira
           defluvii]
          Length = 485

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 135/440 (30%), Positives = 216/440 (49%), Gaps = 35/440 (7%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           A A  +   D++    + +S+   K ++L  P+      +++P  AD +V SP+ +Y+ G
Sbjct: 28  AQAHEVASPDIQTRVPRSLSLITGKSLVLDSPIPFSRASIANPDIADTLVLSPKQLYVIG 87

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGM 150
           K  G  N+ L   +G      D+ +  D+  L+  L +   D N ++V    D + L G 
Sbjct: 88  KAAGTTNLTLWDAEGSVYALYDLAVSPDLTRLKEHLHQLFPDENDLQVMAAHDRLTLTGT 147

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           V +      AV+++ET+  Q            KV+NLL + G  QV L+V +AE+ R +L
Sbjct: 148 VSSATHVSEAVDVAETYARQ------------KVINLLRVGGLHQVMLEVRVAEMERTLL 195

Query: 211 KQIGFQHSIT--GSSSG---------------PSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +++G   +    G S G               PS +  A   G  VS+  +  ++     
Sbjct: 196 RRLGVNLAAASGGQSFGVSSLKNLATVLPPTDPSAALVAGPVGLGVSQAVNALLRFQTGS 255

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            S+   + AL+    ++ LAEPTL A+SGQ A F +GG+     V  + G T++    +G
Sbjct: 256 TSWTGFIDALKEENLVKVLAEPTLVALSGQEAHFLAGGEFPIP-VPQAFGVTTIQFKKFG 314

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           + L+F P VLSP RI + +  EVS+      + +    +P+   R+A T VEL  G +  
Sbjct: 315 IQLNFNPVVLSPTRISVTVAPEVSDLDFANGLSLQGFVVPAITTRRASTVVELEDGQSFA 374

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           +AGLL+D +++     P+L  IPILGALFR+S F + ETE+ I  TP LV PV   +L  
Sbjct: 375 VAGLLRDTVRETVSKFPVLGDIPILGALFRSSSFQKNETELVIIVTPHLVTPVTEAELPL 434

Query: 430 PDDHYSVEDDAKAFFFNRVN 449
           P   Y   DD   +   R+ 
Sbjct: 435 PTGQYLEPDDVDFYLMGRLQ 454


>gi|294012433|ref|YP_003545893.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
 gi|292675763|dbj|BAI97281.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
          Length = 499

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 227/435 (52%), Gaps = 34/435 (7%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
           P    NAA  ++ D  I     +S+G +KVI L  P  + DV++ DP   DV V S   +
Sbjct: 31  PTSALNAAPASMQDNAI----LLSVGGSKVINL--PAKMSDVVIGDPDVVDVHVRSQNQL 84

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
           YL  K  G+  V     +GK + +  + +  ++  ++  L+  + +++I V  ++  V+L
Sbjct: 85  YLIAKKAGETTVFATATNGKVLFSGTVRVGNNLTSIDDMLKLAMPNADIAVNKMNGMVLL 144

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G +   +D+  A  L++ F+ +             V++ L  A   QV L+V IAEV R
Sbjct: 145 TGTIAAPEDAAEAERLTQAFVGKE----------VTVVSRLRTATPLQVNLQVKIAEVSR 194

Query: 208 DILKQIGFQH-----------SITGSSSGPSKSFAADFGG--KFVSEGGDFSVKGVLDRF 254
           D+  +IG                 G  +  + +F +  GG   F ++GG +S+ GV    
Sbjct: 195 DVGHKIGMNWKSQDLTGGKWAGGIGGGTRDAITFNSGGGGTFNFTADGG-YSLGGVARVL 253

Query: 255 SFE--TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +   VL   E +    TLA+P LT++SG++ASF +GG++ Y TVS+ T   S+    Y
Sbjct: 254 GLDIGAVLDLAESSGLATTLAQPNLTSLSGETASFLAGGEYPY-TVSNGTQGNSIEFKQY 312

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           GV L FTPTVL+ GRI LR++  VS     V++  +P+ R R A+TTVEL SG   ++AG
Sbjct: 313 GVQLAFTPTVLADGRISLRVRPTVSSLDFSVDS-SVPALRSRTAETTVELGSGQAFMIAG 371

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           LL +D       +P +  +PILG+LF++  F R ETE+ I  TP+LVKP+   D+  P D
Sbjct: 372 LLNNDTANSISKVPGIGNLPILGSLFKSRNFQRHETELVIVVTPYLVKPMNASDVRLPTD 431

Query: 433 HYSVEDDAKAFFFNR 447
            +   ++ +  F  +
Sbjct: 432 GFRNANEGQGLFLQQ 446


>gi|83950066|ref|ZP_00958799.1| bacterial type II/III secretion system protein [Roseovarius
           nubinhibens ISM]
 gi|83837965|gb|EAP77261.1| bacterial type II/III secretion system protein [Roseovarius
           nubinhibens ISM]
          Length = 429

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 225/447 (50%), Gaps = 48/447 (10%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           +N+ I+++  V   ++ V++ + AD    S RT+YL GK  G+  + L+   G+ + N++
Sbjct: 1   MNRAIVVESDVPFAELSVANASIADFSTLSDRTIYLLGKAPGRTTLTLLDEAGRLITNVE 60

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           I +  DI+  +  LR+ + +  I V   +D +VL G+V +    QRA++L++ +      
Sbjct: 61  IHVSADISEFKERLRQILPNEKIEVRTANDGIVLSGVVSSTPRMQRALDLAQRY------ 114

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
                 + ++V NL++++G+ QV LKV  AE++R + K +G    I G S+       A 
Sbjct: 115 ------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKSLGTSLFIDGLSN-------AG 161

Query: 234 FGGKFVSEGGDFSVK------------GVLDRFSF----------ETVLHALERATAIRT 271
            GG   + G   S +            G  +  +F            ++ ALE    +RT
Sbjct: 162 IGGAISTNGIGSSAQTPVGVQPGTGTAGTNNGAAFIGLNAGSAQVGILIQALESKGLVRT 221

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP LTA+SGQ A+F +GG++    V+   GA +V    +GV L+F P VL    I L 
Sbjct: 222 LAEPNLTALSGQEANFLAGGEYPIP-VAQEEGAIAVEFKPFGVQLNFVPYVLDDEVINLE 280

Query: 332 IQTEVS--EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I   VS  +P  G + G +    +R R   TTV L  G +  +AGLL+DD +     +P 
Sbjct: 281 IAAAVSSIDPSNGYSDGTITIAGFRTRSTSTTVSLRDGDSFAIAGLLQDDFEDTNGQVPW 340

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  +PILGALFR++ + R +TE+ I  T  LV P     L+ P D      +A  F   R
Sbjct: 341 LGDLPILGALFRSANYQRSQTELVIIVTAHLVTPTRGEALALPTDRVLPPSEADLFLNGR 400

Query: 448 VNKIYGPKEAS--EVEGQNYKGAIGFI 472
           V +     + S  EV  Q++ G+ G++
Sbjct: 401 VARQVRNSKGSVGEVAKQDFNGSYGYV 427


>gi|89068017|ref|ZP_01155434.1| Outer membrane general secretion pathway protein, Secretin
           [Oceanicola granulosus HTCC2516]
 gi|89046256|gb|EAR52313.1| Outer membrane general secretion pathway protein, Secretin
           [Oceanicola granulosus HTCC2516]
          Length = 482

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 137/459 (29%), Positives = 226/459 (49%), Gaps = 51/459 (11%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + + + +N+ ++++      +V +++P  AD+   S RT+Y+ GK  G+  + L+G DG+
Sbjct: 39  RALQVPMNRAVVVESDTPFTEVSIANPGIADISTLSDRTLYVLGKEPGRTTLTLLGADGR 98

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + N+++ +  DI   +  L + +   +I V   ++ +VL G V +I    RA+EL++ +
Sbjct: 99  LITNVEVQVTPDIDEFKERLAQILPGEHIEVRTAANGIVLSGTVSSIARLDRALELAQRY 158

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                       +  +V NL+ + G  QV LKV  AE++R + K +    +  G++ G +
Sbjct: 159 ------------APDRVSNLMTVGGVQQVMLKVRFAEMQRSVSKSLSSSLTARGTALGEN 206

Query: 228 KSFAADFG-------------GKFVSEGGD-------FSVKGVLDRFSFETVLHALERAT 267
               A  G             G   +   +       F+  GV        +L ALE   
Sbjct: 207 LGLTAGTGTLTGNGAIGSALNGNVPAANANNGALLLGFNAGGV----EIGMLLEALESRG 262

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
            +RTLAEP LTA+SGQ A F +GG++    VS   G+ S+    +GV L+F P V+    
Sbjct: 263 VVRTLAEPNLTALSGQEARFLAGGEYPVP-VSQDGGSISIEYKPFGVELNFIPRVVDGDL 321

Query: 328 IGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           I L +Q  VS  +P  G   G   + ++R R+  TTVE+  G +  +AGLL DD   L  
Sbjct: 322 INLELQASVSSIDPTNGFVQGGFSIDAFRRRETSTTVEMRDGESFAIAGLLSDDFIDLNS 381

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +P +  IP+LGALFR++ + R +TE+ I  TP LV P     L+ P D      +   F
Sbjct: 382 QLPFVGDIPVLGALFRSAEYERNQTELVIIVTPHLVTPTRGEALALPTDRVRPPSERDLF 441

Query: 444 FFNRVNKIYG--------PKE--ASEVEGQNYKGAIGFI 472
            F RV    G        P+   A+EV  Q++ G+ G++
Sbjct: 442 LFGRVTAPDGSPIPSSSAPQSGAAAEVARQDFSGSYGYV 480


>gi|224824213|ref|ZP_03697321.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
 gi|224603632|gb|EEG09807.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
          Length = 520

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/387 (33%), Positives = 211/387 (54%), Gaps = 33/387 (8%)

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD--SN 135
           DV++ SP  +YL GK+VG  N+IL+G +G+  L +D+ +  D A L+ +L + ++   +N
Sbjct: 119 DVILLSPSEIYLLGKSVGSTNIILLGRNGQCTL-VDVAVGADTASLQASLNQLLSPGANN 177

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           ++V   SD++VL G V       RA+ L+E +  +S           KV+N++++    Q
Sbjct: 178 VKVSAASDSLVLTGTVADSAKLDRAMTLAEAYAGKS-----------KVINMMSVDAPQQ 226

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V L+V IAE+ + +L ++G   +   +  G + S+ + F    +   G   + G+ D  +
Sbjct: 227 VLLEVKIAEISKKLLDKLGVNIAGILNHGGWTYSWNSLFANDPL---GKALLSGINDSAT 283

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--GATSVTTHD-- 311
               + A      ++ LAEP L AISGQ  SF +GG+       ++T  G +++T  +  
Sbjct: 284 RAFQIDAQHDDGLLKVLAEPNLMAISGQEGSFLAGGKIFIPVAQNNTNNGGSTITLEEKE 343

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGD--MPSYRVRKADTTVE 361
           +GV L FTPTVL  GRI L++  EVSE          IGV AG   +PS+  R+A TTV+
Sbjct: 344 FGVALRFTPTVLDGGRINLKVAPEVSELNPEGVGISAIGV-AGKSILPSFTTRRAATTVQ 402

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L  G +  + GLLK+++       P L +IPILGALFR++ F  +++E+    TP LVKP
Sbjct: 403 LHDGQSFAIGGLLKNNVTTNISAFPFLGEIPILGALFRSTSFQTDKSELVFVVTPRLVKP 462

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRV 448
           +   D   P D+Y   + A+ F   R+
Sbjct: 463 LP-PDYKLPTDNYIPPNRAELFLGGRM 488


>gi|84516633|ref|ZP_01003992.1| Outer membrane general secretion pathway protein, Secretin
           [Loktanella vestfoldensis SKA53]
 gi|84509669|gb|EAQ06127.1| Outer membrane general secretion pathway protein, Secretin
           [Loktanella vestfoldensis SKA53]
          Length = 476

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 138/455 (30%), Positives = 225/455 (49%), Gaps = 51/455 (11%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
             + + +N+ ++++  V   ++ +++P  AD+   S RT+Y+ GK  G+  + L+  DG+
Sbjct: 40  NALDVPMNRAVVVESDVPFTELSIANPGIADISSLSDRTIYVLGKEPGRTTLTLLSADGR 99

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + N+++ +  D+A  +  L + +   NI V   +D +VL G V +     RA++L++ +
Sbjct: 100 LITNVEVHVSPDMAEFKERLTQILPGENIEVRTANDGIVLSGTVSSTARLDRALDLAQRY 159

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL----------------- 210
                       +  +V NL+++ G  QV LKV  AE++R +                  
Sbjct: 160 ------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVSKALSSSLSLNGTSLQNG 207

Query: 211 KQIGFQHSITGSSSGPSKSF------AADFGGKFVSEGGDFSVK-GVLDRFSFETVLHAL 263
           + I    + T   +G + +       A D  G F+   G   V+ GVL        L AL
Sbjct: 208 RNIRGGSNTTVGQAGITNTLNNIVPTANDNNGAFLFGFGAGGVEVGVL--------LEAL 259

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E    +R+LAEP LTA+SGQ A+F +GG++    VSS  GA SV    +GV L+FTP V+
Sbjct: 260 ESRGVVRSLAEPNLTALSGQQATFLAGGEYPVP-VSSEDGAISVEYKPFGVELNFTPRVV 318

Query: 324 SPGRIGLRIQTEVS--EPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
               I L +   VS  +P      N  ++ ++  R+  TTVE+  G +  +AGLL DD  
Sbjct: 319 DGDVINLELLAAVSAIDPSNSFSANGFEISAFSRRETSTTVEMRDGESFAIAGLLSDDFT 378

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
            L   +P +  +PILGALFR++ + R +TE+ I  TP LV P     L+ P D      +
Sbjct: 379 DLSGQVPWIGDVPILGALFRSAEYARRQTELVIIVTPHLVSPTRGTALALPTDRVRPPSE 438

Query: 440 AKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFI 472
              F F RV     P    A EV  Q++ G+ G++
Sbjct: 439 QDLFLFGRVTAASAPTRGGAGEVARQDFMGSYGYV 473


>gi|294676059|ref|YP_003576674.1| type II and III secretion system protein [Rhodobacter capsulatus SB
           1003]
 gi|294474879|gb|ADE84267.1| type II and III secretion system protein [Rhodobacter capsulatus SB
           1003]
          Length = 469

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 221/448 (49%), Gaps = 41/448 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ +N+ ++++      ++ +++P  ADV   S +T+Y+ GK  G+  + ++G DG  +
Sbjct: 40  LAVPMNRAVVVESDQPFSELSIANPGIADVTTLSDKTIYVLGKVPGRTTMTILGADGTLL 99

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N+++ +  DIA  +  L++ +   NI V   +D +VL G V +     RA++L+  +  
Sbjct: 100 SNVEVQVTPDIAEFKERLKQILPGENIEVRTANDGIVLSGTVSSSAKLDRALDLARRY-- 157

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ----------IGFQHSI 219
                     + ++V NL+N+ G  QV LKV  AE++R + K           +G  ++ 
Sbjct: 158 ----------AGERVSNLMNVGGTQQVMLKVRFAEMQRSVSKNLASSLAMRGTVGGGNAQ 207

Query: 220 TGSSSGPSKSFAADFGGKFVSEG---------GDFSVKGVLDRFSFETVLHALERATAIR 270
           TG  +G     A D  G    +G         G   +   +    F  +L ALE    +R
Sbjct: 208 TGVITGTGNFTATDAVGNAFDKGTMPISASTQGALGLGFTVGNMEFGVLLEALESKGMVR 267

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           TLAEP LTA+SGQ A F +GG++    V       ++    +GV + F P V+    I L
Sbjct: 268 TLAEPNLTALSGQQAKFLAGGEYPIPVVDDD--GITIEYKPFGVEMSFIPRVVDGDLINL 325

Query: 331 RIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I   VS     V    N   + +++ R+  TTVE+  G +  +AGLL+DD   L   IP
Sbjct: 326 EIAAAVSAIDTSVTMTNNGTTVNAFKRRETSTTVEMRDGESFAIAGLLQDDFNDLNTQIP 385

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            L  +P+LG+LFR++ F R+++E+ I  TP LV P     L+ P D   +  +++ F   
Sbjct: 386 WLGDVPVLGSLFRSTAFERKQSELVIIITPHLVTPTHGEALALPTDRIRLPSESELFLRG 445

Query: 447 RVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +         A EV  Q++ G+ G++ +
Sbjct: 446 KTEG----GAAGEVARQDFSGSYGYVME 469


>gi|330953268|gb|EGH53528.1| type III secretion component [Pseudomonas syringae Cit 7]
          Length = 438

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/412 (33%), Positives = 210/412 (50%), Gaps = 28/412 (6%)

Query: 44  IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           I KG K    ++IG  +V+    PVD   V+V++P  AD+ V SP  +Y+FGK  GQ ++
Sbjct: 29  IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKTAGQTSL 86

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I +  +G++   L + +    A +   L+     S  R+      V+  G V   QD   
Sbjct: 87  IALDSEGRETATLSLAVSSGTAAVSRPLKALHPQSQARINASGSRVIASGAV---QDVGE 143

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A +L+   LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   + 
Sbjct: 144 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNA 196

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFETVLHALERATAIRTLAE 274
             ++   + SF    GG   ++         S        + + +L AL+    +  LAE
Sbjct: 197 LFNNG--TFSFGLLTGGSLAADAASGASNVISAGLTSGNVNIDAMLEALQNNGVLEVLAE 254

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +TA++GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ 
Sbjct: 255 PNITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRP 313

Query: 335 EVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVS       + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  
Sbjct: 314 EVSSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGD 373

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           +PILG+LFR+ RF R ETE+ I  TP+LV+PV  R  + P D       A A
Sbjct: 374 MPILGSLFRSKRFQRNETELVILITPYLVEPVKERVAATPLDKQRAASTAAA 425


>gi|163738370|ref|ZP_02145785.1| bacterial type II/III secretion system protein [Phaeobacter
           gallaeciensis BS107]
 gi|161388291|gb|EDQ12645.1| bacterial type II/III secretion system protein [Phaeobacter
           gallaeciensis BS107]
          Length = 484

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 133/459 (28%), Positives = 234/459 (50%), Gaps = 53/459 (11%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V+ G    + + +N+ ++++  V   ++ +++P+ AD+   S RT+Y+ GK+ G   + L
Sbjct: 49  VKKGTAANLEVPMNRAVVVESDVPFSELSIANPSIADISSLSDRTIYVLGKSPGLTTLTL 108

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +   G+ + N+D+ +  D++  +  LR+ +    I V   +D +VL G+V +    QRA+
Sbjct: 109 LDASGRLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGIVLSGVVSSSARLQRAL 168

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF------ 215
           +L+E +            + ++V NL+++ G  QV LKV  AE++R + K +        
Sbjct: 169 DLAERY------------APERVSNLMSVGGVQQVMLKVRFAEMQRTVSKSLSASLGVKG 216

Query: 216 ---------------QHSITGSSSG--PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
                          Q ++T S SG  P+ +   D  G FV     F        F    
Sbjct: 217 GNSVGVNGGTSTLNTQGALTNSLSGNIPAGN---DNTGAFV-----FGFNA--GAFQVNL 266

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L ALE+   +RTLAEP L+A+SGQ A F +GG++    V+   G  ++    +G+ L+F
Sbjct: 267 LLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDGIITIEFKPFGIELNF 325

Query: 319 TPTVLSPGRIGLRIQTEVS--EPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            P V+    I L ++  VS  +P   I +N   + ++  R+  TTVEL  G +  +AGL+
Sbjct: 326 VPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRETSTTVELRDGESFAIAGLI 385

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +D+ +     +P +  +P+LG+LFR++ + R +TE+ I  +  LV P     LS P D  
Sbjct: 386 RDEFRDSSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLVTPTRGEALSLPTDRI 445

Query: 435 SVEDDAKAFFFNRVNK-IYGPKEASEVEGQNYKGAIGFI 472
               +++ F   RV K   GP  ASEV  Q++ G+ G++
Sbjct: 446 RPPSESELFLMGRVAKGQKGP--ASEVAKQDFNGSYGYV 482


>gi|163742213|ref|ZP_02149601.1| bacterial type II/III secretion system protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384543|gb|EDQ08924.1| bacterial type II/III secretion system protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 484

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 132/457 (28%), Positives = 234/457 (51%), Gaps = 49/457 (10%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V+ G    + + +N+ ++++  V   ++ +++P+ AD+   S RT+Y+ GK+ G   + L
Sbjct: 49  VKKGTAANLEVPMNRAVVVESDVPFSELSIANPSIADISSLSDRTIYVLGKSPGLTTLTL 108

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +   G+ + N+D+ +  D++  +  LR+ +    I V   +D +VL G+V +    QRA+
Sbjct: 109 LDASGRLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGIVLSGVVSSSARLQRAL 168

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF------ 215
           +L+E +            + ++V NL+++ G  QV LKV  AE++R + K +        
Sbjct: 169 DLAERY------------APERVSNLMSVGGVQQVMLKVRFAEMQRTVSKSLSASLGVKG 216

Query: 216 ---------------QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
                          Q ++T S SG   + A D  G FV     F        F    +L
Sbjct: 217 GNSVGVNGGTSTLNTQGALTNSLSGNIPA-ANDNTGAFV-----FGFNA--GAFQVNLLL 268

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            ALE+   +RTLAEP L+A+SGQ A F +GG++    V+   G  ++    +G+ L+F P
Sbjct: 269 EALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDGVITIEFKPFGIELNFIP 327

Query: 321 TVLSPGRIGLRIQTEVS--EPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            V+    I L ++  VS  +P   I +N   + ++  R++ TTVE+  G +  +AGL++D
Sbjct: 328 RVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRESVTTVEMRDGESFAIAGLIRD 387

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           + +     +P +  +P+LG+LFR++ + R +TE+ I  +  LV P     LS P D    
Sbjct: 388 EFRDNSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLVTPTRGEALSLPTDRIRP 447

Query: 437 EDDAKAFFFNRVNK-IYGPKEASEVEGQNYKGAIGFI 472
             +++ F   RV K   GP  ASEV  Q++ G+ G++
Sbjct: 448 PSESELFLMGRVAKGQKGP--ASEVAKQDFNGSYGYV 482


>gi|126729098|ref|ZP_01744912.1| bacterial type II/III secretion system protein [Sagittula stellata
           E-37]
 gi|126710088|gb|EBA09140.1| bacterial type II/III secretion system protein [Sagittula stellata
           E-37]
          Length = 473

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/481 (29%), Positives = 242/481 (50%), Gaps = 58/481 (12%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
           +A + P   A++    I  V  G    +S+ +N+ ++++      ++ +++P+ AD+   
Sbjct: 18  IATMSPPAHADS----IRVVRTGTESVLSVPMNRAVVVESDTPFAELSIANPSIADISSL 73

Query: 83  SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
           S RT+Y+ GK  G   + ++   G+ + N+D+ +  D+   +  L + + +  I V   +
Sbjct: 74  SDRTIYVLGKQPGTTTLTILDPQGQLITNVDVRVAADVTEFKERLTQILPEERIEVRTAN 133

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
           D +VL G V +I   +RA++L++ +            +  +V NL+ + G  QV LKV  
Sbjct: 134 DGIVLSGTVSSIARMERALDLAQRY------------APDRVSNLMVVGGIQQVMLKVRF 181

Query: 203 AEVRRDILKQIGFQHSITGSSSG--------------PSKSFAAD--FGGKFVSEGG--- 243
           AE+RR + K +    + TG S+G                +   AD  F  +  +EG    
Sbjct: 182 AEMRRSVSKALRASLA-TGGSTGDLGVELGTGNAGTLAERDLVADKLFPRRLGTEGAVLF 240

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F+  G         +L ALE    +RTLAEP LTA+SGQ ASF +GG++    V ++ G
Sbjct: 241 GFNAGG----LEVGILLEALESKGMVRTLAEPNLTALSGQEASFLAGGEY---PVPTAQG 293

Query: 304 ATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD--MPSYRVRKAD 357
             SVT     +GV L F P V+    I L ++  VS  +   G+   D  +  +  R+A 
Sbjct: 294 DNSVTVEFKPFGVELAFVPRVIDGDLINLELEAAVSSVDSANGITFQDVTIAGFARREAK 353

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTVEL  G +  +AGLL+++   L   +P +  +PILGALFR++ + RE++E+ I  TP 
Sbjct: 354 TTVELRDGESFAIAGLLQENFADLNGQVPWIGDVPILGALFRSTEYQREQSELVIIVTPH 413

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG----PKE--ASEVEGQNYKGAIGF 471
           LV P     L+ P D  ++  + +  F N   KI G    P+   A+EV  Q++ G+ G+
Sbjct: 414 LVTPTRGEALALPTDRVTLPSE-RQLFLN--GKIDGNGRRPRSGAAAEVANQDFNGSYGY 470

Query: 472 I 472
           +
Sbjct: 471 V 471


>gi|259417373|ref|ZP_05741292.1| type II and III secretion system protein [Silicibacter sp.
           TrichCH4B]
 gi|259346279|gb|EEW58093.1| type II and III secretion system protein [Silicibacter sp.
           TrichCH4B]
          Length = 442

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 134/455 (29%), Positives = 227/455 (49%), Gaps = 40/455 (8%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
           IS ++ G    + + +N+ ++++  V   ++ +++P  AD+   S RT+Y+ GK+ G   
Sbjct: 5   ISVLKKGTNAVLDVPMNRAVVVEADVPFAELSIANPGIADISSLSDRTIYVLGKSPGMTT 64

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           + L+   G  + N+D+ +  D++  +  L++ + +  I V   +D +VL G V + Q  Q
Sbjct: 65  LTLLDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSGTVSSAQRLQ 124

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           RA++L+E +            +  +V NL+ + G  QV LKV  AE+ R + K +G    
Sbjct: 125 RALDLAERY------------APDRVSNLMTVGGIQQVMLKVRFAEMERSVSKSLGGSML 172

Query: 219 ITGSSSG--PSKSFA--ADFGGKFVSEGGDFSVKGVLDRFS------------FETVLHA 262
           I GSS G   + +F    + GG F   G D  V    D               F  +L A
Sbjct: 173 I-GSSDGNVSTGTFLNRPEGGGVF---GTDSPVNLKADTLGAAIFGFDIGAVQFNVLLEA 228

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE+   +RTLAEP L+A+SGQ ASF +GG++    V+   G  +V    +G+ L+F P V
Sbjct: 229 LEQKGLVRTLAEPNLSALSGQEASFLAGGEYPVP-VAQEEGVVTVEFKPFGIELNFIPRV 287

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-----RKADTTVELPSGGTIVLAGLLKDD 377
           +    I L ++  VS  +   NA     + +     R+  TTVEL  G +  +AGL++D+
Sbjct: 288 VDGDLINLELKAAVS-AIDTTNAATFDGFSINAFSRRETATTVELRDGESFAIAGLIEDE 346

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
            +     +P L  +P+LGALFR++ + R ++E+ I  +  LV P     L+ P D     
Sbjct: 347 FRDGAAQVPWLGDVPVLGALFRSADYERNQSELVIIVSAHLVTPTRGEALALPTDRIRPP 406

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
            +   F F R  +      A EV  Q++ G+ G++
Sbjct: 407 SEKNLFLFGRTERAQS-GAAGEVANQDFNGSYGYL 440


>gi|86137993|ref|ZP_01056569.1| bacterial type II/III secretion system protein [Roseobacter sp.
           MED193]
 gi|85825585|gb|EAQ45784.1| bacterial type II/III secretion system protein [Roseobacter sp.
           MED193]
          Length = 459

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 229/448 (51%), Gaps = 34/448 (7%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V+ G    + + +N+ ++++      ++ +++P  AD+   S RT+Y+ GK+ G   + L
Sbjct: 27  VKRGTSVTLDVPMNRAVVVESDDPFAELSIANPNIADISSLSDRTIYVLGKSPGLTTLTL 86

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +   GK + N+++ +  D++  +  LR+ +    I V   +D +VL G V +    QRA+
Sbjct: 87  LDASGKLITNVNVRVAADVSEFKERLRQILPGEQIEVRTANDGIVLSGNVSSAARLQRAL 146

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-- 219
           +L+E +            + ++V NL+++ G  QV LKV  AE++R + K +    ++  
Sbjct: 147 DLAERY------------APERVSNLMSVGGVQQVMLKVRFAEMQRSVSKALHSSVALGS 194

Query: 220 -TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---------TVLHALERATAI 269
             G++SG +  +   FG   +         G+    +F+          +L ALE+   +
Sbjct: 195 QNGNASGETGQWL--FGNNGLGNTPIEVKDGIAGALAFQFGVGSLQVGLLLEALEQKGVV 252

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           RTLAEP L+A+SGQ A F +GG++    VS   G  +V    +G+ L+F P V+    I 
Sbjct: 253 RTLAEPNLSALSGQEAKFLAGGEYPIP-VSQDGGTVTVEFKPFGIELNFIPRVVDGDVIN 311

Query: 330 LRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L ++  VS       +  N   + ++  R+  TTVEL  G +  +AGL++DD       I
Sbjct: 312 LELKAAVSAIDTSNTVTANGLSIAAFSRRETSTTVELRDGESFAVAGLVQDDFLDNTSQI 371

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P +  +P+LGALFR++ + RE+TE+ I  +  LV P     LS P D      +++ F  
Sbjct: 372 PWIGDVPVLGALFRSADYQREQTELVIIVSAHLVTPTRGEALSLPTDRIKPPSESELFLL 431

Query: 446 NR-VNKIYGPKEASEVEGQNYKGAIGFI 472
            R V+   GP  ASEV  Q++ G+ G++
Sbjct: 432 GRTVHSQKGP--ASEVAKQDFNGSYGYV 457


>gi|85859139|ref|YP_461341.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB]
 gi|85722230|gb|ABC77173.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB]
          Length = 503

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 129/435 (29%), Positives = 221/435 (50%), Gaps = 39/435 (8%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V   + +K+++ + K  I++ P +++ V ++ P  AD++  SPR +YL GK  G  N+ L
Sbjct: 39  VNTSRPQKLTLTVGKSTIVECPQNLKRVSIAAPDYADILTLSPRQIYLTGKMAGNTNLTL 98

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
              D   M  +D+ +  D+  L+  +   + D  +IRV    D + L G V +  +  + 
Sbjct: 99  WRSDNSVMSVIDVEVLPDVVGLKEKIHSMMPDEKDIRVTATPDAITLSGTVSSAANMNQV 158

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217
           + L+ ++ +  G+++        V N L + G  QV L+V ++E+ R ++K++G      
Sbjct: 159 MSLANSY-APKGKDKTGG-----VNNFLEVGGVHQVMLEVRVSEMSRSLIKKLGINWNYL 212

Query: 218 SITGSSSG-------------------PSKSFAADFG----GKFVSEGGDFSVKGVLDRF 254
           S  G++ G                   P    +A  G    G  VS     + +      
Sbjct: 213 SEGGNTFGMSMLDNLTYTVSPSDANIQPMTHLSASEGAVSVGTLVSSSVGLAFRFFGGGA 272

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           ++   + A++    ++ LAEPTL  +SG++ASF +GG+  +          ++    +GV
Sbjct: 273 TWTLFIDAMKDQGLLKVLAEPTLLTLSGKTASFLAGGE--FPIPVPQEENITIEYKPFGV 330

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            L+FTPTVLS  +I +++  EVS+      + V    +PS   R+  TTVEL  G +  +
Sbjct: 331 GLNFTPTVLSNKKISMQVSPEVSDLDYTNAVAVGGYAVPSITTRRVATTVELADGQSFAI 390

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLLKDDI+Q+   +PLL  IP+LG+LFR+S+F + ETE+ I  TP LVKP+ M   + P
Sbjct: 391 AGLLKDDIRQIVRKVPLLGDIPVLGSLFRSSQFRKNETELVIIVTPRLVKPLDMTKQTLP 450

Query: 431 DDHYSVEDDAKAFFF 445
            D Y   +D + +  
Sbjct: 451 TDQYVEPNDFEFYLL 465


>gi|237800794|ref|ZP_04589255.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023652|gb|EGI03709.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 432

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 135/412 (32%), Positives = 211/412 (51%), Gaps = 28/412 (6%)

Query: 44  IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           I KG +    ++IG  +V+    PVD   V+V++P  AD+ V SP  +Y+FGK  GQ ++
Sbjct: 23  IAKGAEGTIDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKTAGQTSL 80

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I +  +G++   L + +    A +   L+     S  R+    + V+  G   ++QD   
Sbjct: 81  IALDSEGRETAALSLAVSSGTAAVTRPLKALHPQSRARISASGNRVIASG---SVQDVGE 137

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A +L+   LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   + 
Sbjct: 138 ATDLN-ALLSSEGQN------FQSSVNSATYAGAAQVNIRVRFAEVSRSELLRYGVNWNA 190

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFETVLHALERATAIRTLAE 274
             ++   + SF    GG   ++         S        + + +L AL+    +  LAE
Sbjct: 191 LFNNG--TFSFGLLTGGSLAADAASGASNVISAGLTSGNVNIDAMLEALQSNGVLEVLAE 248

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +TA++GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ 
Sbjct: 249 PNITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRP 307

Query: 335 EVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVS       + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  
Sbjct: 308 EVSSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGD 367

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           +PILG LFR+ RF R ETE+ I  TP+LV+PV  R  + P D       A A
Sbjct: 368 MPILGNLFRSKRFQRNETELVILITPYLVEPVKERVAATPLDKQRATSTASA 419


>gi|325525578|gb|EGD03368.1| flp type pilus assembly protein [Burkholderia sp. TJI49]
          Length = 545

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 132/412 (32%), Positives = 220/412 (53%), Gaps = 28/412 (6%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+ G  G   
Sbjct: 99  VSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQGRSGACR 158

Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +D+ +  D   L+ +L++ + +  +I V   + T+VL G V   Q +Q+AV ++  + 
Sbjct: 159 V-IDVAVGADAGGLQTSLQQLMPNERDIHVSTAAGTIVLAGSVSNSQAAQQAVAIARAYG 217

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSG 225
             +G           V+N+L++    QV L+V +AEV + ++ Q+G   +I G   S SG
Sbjct: 218 DSAGSGDAGGKPGSGVLNMLSVTSPQQVMLEVKVAEVSKTLINQLGSAFNIQGGFGSWSG 277

Query: 226 P--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
              S   A    G  VS+          +R  F+    A      ++ LAEP L  ISGQ
Sbjct: 278 ALVSNLLAGVASGIAVSKS---------NRRPFQIAADAQNTDNLVKILAEPNLVTISGQ 328

Query: 284 SASFTSGGQHLYKTVSSSTG-ATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSE-P 339
            A+F +GG+       SS G AT++T  +  +GV L FTPTVL+ GRI L++  EVSE  
Sbjct: 329 EATFLAGGKIFIPVPQSSGGNATTITLQEEEFGVALKFTPTVLANGRISLKVAPEVSELS 388

Query: 340 VIGV--------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
             GV         A  +P    R+A TTV++  G +  + GL+KD++    + IP + ++
Sbjct: 389 STGVTLSATNVSGASILPLITTRRASTTVQMNDGESFAIGGLIKDNVTGALKAIPGVGEV 448

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           P+LGALFR++ F ++ TE+    TP LVKP+ + D+  P D +S  ++A  +
Sbjct: 449 PVLGALFRSTSFQQDRTELIFLITPHLVKPMQIADVPLPTDSFSKPNEADVY 500


>gi|254463467|ref|ZP_05076883.1| bacterial type II/III secretion system protein [Rhodobacterales
           bacterium HTCC2083]
 gi|206680056|gb|EDZ44543.1| bacterial type II/III secretion system protein [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 474

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 145/488 (29%), Positives = 242/488 (49%), Gaps = 46/488 (9%)

Query: 10  TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
           T+ + FL  +    A + P   A+A  + I  V  G    + I +N+ ++++  V   ++
Sbjct: 6   TLRAAFLGCAVLFTASVAP---AHADTLRI--VRSGSSSTLPIPMNRAVVVESDVPFAEL 60

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
            +++P+ AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  D++  +  LR+
Sbjct: 61  SIANPSIADISTLSDRTVYVLGKSPGLTTLTLLDDAGRLITNVDVRVSADVSEFKERLRQ 120

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
            +    I V   +D +VL G V +     RA++L++ +            + ++V NLL+
Sbjct: 121 ILPGEKIEVRTANDGIVLSGTVSSAGKVDRAMDLAQRY------------APERVTNLLS 168

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQH-----------SITGSSSGPSKSFAADFGGKF 238
           ++G  QV LKV  AE++R + K +               S+ G ++  +   A+      
Sbjct: 169 VSGVQQVMLKVRFAEMQRSVSKSLSSSLALGGSALGGNLSVRGGTNTLASGAASSAAIAG 228

Query: 239 VSEGGDFSVKGVLDRFSFET-------VLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            +   + +    L  F F         +L ALE    +RTLAEP LTA+SGQ A F +GG
Sbjct: 229 TAPANNANNGATL--FGFNAGGLEVGILLEALESKGMVRTLAEPNLTALSGQEAKFLAGG 286

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGV--NAGD 347
           ++     SSS     +    +GV L F P VL    I L +  EVS  +   G+  +   
Sbjct: 287 EYPIPVQSSS--GVQIQFKPFGVQLAFIPRVLDDKVINLELNAEVSSLDAANGIVSDGFA 344

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +   +VR+  TTVE+  G +  +AGLL+DD   L   +P L  IP+LGALFR++ + RE+
Sbjct: 345 ISGLKVRRTSTTVEMRDGESFAIAGLLQDDFTDLSGQVPWLGDIPVLGALFRSADYKREQ 404

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN-KIYGPKE--ASEVEGQN 464
           +E+ I  TP LV P     L+ P D  S   +   F F RV      PK+  A+EV  Q+
Sbjct: 405 SELVIIVTPHLVTPTRGEALALPTDRISPPTEKDLFLFGRVTGDSRRPKKGAAAEVARQD 464

Query: 465 YKGAIGFI 472
           + G+ G++
Sbjct: 465 FTGSYGYV 472


>gi|186474103|ref|YP_001861445.1| type II and III secretion system protein [Burkholderia phymatum
           STM815]
 gi|184196435|gb|ACC74399.1| type II and III secretion system protein [Burkholderia phymatum
           STM815]
          Length = 700

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 230/454 (50%), Gaps = 53/454 (11%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + ++I + K  ++ V   V+   V +P+    ++ SP+T+YL G +VG  N+I+ G  G 
Sbjct: 116 QTVTIPIGKSTMVNVRESVKTRTVGNPSIVQAMLVSPQTLYLLGTDVGTTNMIVQGRSGS 175

Query: 108 QMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
             + +D+ +  D   L+ TL   + + S ++V+  +DT+VL G V     ++R VEL+  
Sbjct: 176 CTV-IDVAVGADPGGLQQTLAVLMPEESGVQVKAAADTLVLTGTVSDSVKAERIVELARA 234

Query: 167 FLSQSGR--------------------------NQYANSSSKKVMNLLNIAGEDQVTLKV 200
           ++++                                 N ++++++N++++A   QV L+V
Sbjct: 235 YVARQAAPVPVAAPANAGGAQGGAMIPAVLKPAGASGNGNNERIVNMMHVAAPQQVMLEV 294

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFVSEGGDFSVKGVLDRFSFET 258
            +AEV + ++ Q+G   +I G +   S    ADF  GG     G     K      +F  
Sbjct: 295 KVAEVSKTLIDQLGMAANIQGGTGSWSFGLLADFLSGGM----GALLGSKANNKPLNF-- 348

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----THDYGV 314
            + A +    ++ LAEPTL AISGQ ASF +GG+ ++  V  S GA   T       +GV
Sbjct: 349 AIDAQKTDQLVKVLAEPTLMAISGQEASFLAGGR-VFIPVPQSNGAAGSTIILQEETFGV 407

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE--PV-IGVNAGD------MPSYRVRKADTTVELPSG 365
            L FTPTVL  GRI L++  EVSE  P  + V AG       +P    R+A TT+++  G
Sbjct: 408 GLTFTPTVLDNGRINLKVSPEVSELSPTGVAVTAGTVSTTAVLPLITTRRASTTLQVYDG 467

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            +  + GL+K ++    +G+P L ++P+LGALFR++ F  ++TE+    TP L KP+  +
Sbjct: 468 QSFAIGGLMKSNVTGTLKGLPGLGEVPVLGALFRSTNFQEDKTELVFVVTPRLAKPLP-Q 526

Query: 426 DLSRPDDHYSVEDDAKAFFFNRV--NKIYGPKEA 457
           +   P DH+    +A  FF   +   K   P EA
Sbjct: 527 NYPLPTDHFGKVTEAGVFFTGNMEGKKPQAPAEA 560


>gi|167589424|ref|ZP_02381812.1| type II and III secretion system protein [Burkholderia ubonensis
           Bu]
          Length = 460

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 136/448 (30%), Positives = 222/448 (49%), Gaps = 41/448 (9%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +++   K  +L +P     + V+DP+ AD+ V SPRT+++FGK  G   +I +G + 
Sbjct: 33  GAPLTLAAGKGDLLSLPEPAATMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANH 92

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +L   ++++ D   L+  L        ++V     ++++ G V +  D+   ++    
Sbjct: 93  RPILRRTVIVQADTPSLQRVLDSRFPQWQLKVSGAPGSLMVSGKVPSGADADAVMQSLAP 152

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +L             +K++N L ++   QV L+V + EV R+I +Q+G   S  G S   
Sbjct: 153 YLQDK----------EKLVNRLTLSRPIQVNLRVRVTEVSRNITQQLGINWSGLGGSG-- 200

Query: 227 SKSFAADFGGKFV----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAE 274
                  F G+ +          S  G FSV G     R+S + VL AL++   I  LAE
Sbjct: 201 -NFIGGLFNGRTLFDPTTSLFNLSPTGAFSVLGGFRAGRWSIDVVLDALDQEGLITMLAE 259

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSS--STGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           P LTA+SG++ASF +GG+       S  +TGA +V    +GV L FTPTVL+  RI L++
Sbjct: 260 PNLTAMSGETASFLAGGEIPIPVAQSGTTTGAITVEFKPFGVSLDFTPTVLAENRISLKV 319

Query: 333 QTEVSE--PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           + EVSE  P   V  G   +P+  VR+ +TTVEL SG +  + GLL+     +   IP L
Sbjct: 320 RPEVSEIDPTNSVTTGGVKVPALSVRRVETTVELSSGQSFAIGGLLQSQTSDVVSQIPGL 379

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR- 447
            ++P+LG LF +  F   +TE+ +  TP++V+P     L +  D  +       F   R 
Sbjct: 380 GRLPVLGRLFSSKNFQDNKTEVVVIVTPYIVQPAGPGQLEQAIDTVARPSSDLEFAVQRN 439

Query: 448 --VNKIYGPKEASEVEGQNYKGAIGFIY 473
             ++ + G       +     GA GF+Y
Sbjct: 440 LGLDLLSG-------DTPRLVGAAGFVY 460


>gi|218670938|ref|ZP_03520609.1| putative pilus assembly protein [Rhizobium etli GR56]
          Length = 186

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/183 (53%), Positives = 129/183 (70%), Gaps = 5/183 (2%)

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           Q LY T + S G  +V   +YG+ L F P VLS GRI L I+T VSEPV G  +G+  +Y
Sbjct: 9   QQLYST-TDSDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAG--SGNA-TY 64

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R A+T+VELPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR   F R+ETE+ 
Sbjct: 65  QRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELV 124

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
           I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+YG +EA   + Q + G+IGF
Sbjct: 125 IIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGF 183

Query: 472 IYK 474
           IYK
Sbjct: 184 IYK 186


>gi|103486617|ref|YP_616178.1| type II and III secretion system protein [Sphingopyxis alaskensis
           RB2256]
 gi|98976694|gb|ABF52845.1| type II and III secretion system protein [Sphingopyxis alaskensis
           RB2256]
          Length = 493

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 140/445 (31%), Positives = 224/445 (50%), Gaps = 49/445 (11%)

Query: 32  ANAAVINIS---DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
           A  AV N S   D+ +G+G+ IS+          P  + DV V+D   ADV V S R +Y
Sbjct: 34  AAQAVQNASSSIDLSVGRGRLISL----------PAAMSDVFVADDKVADVQVRSSRQLY 83

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           +F K  G+ ++      G+ + +    +  +I  ++  L   + +++I    ++  V+L 
Sbjct: 84  VFAKAPGETSIYATDASGRVVFSTVARVGNNIETIDQMLSLAMPEASIAANTMNGFVLLT 143

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G VR+  D+  A  L + F+              KV++ L  A   QV L+V IAEV R 
Sbjct: 144 GTVRSPDDAAEAERLVQAFVGDQ----------TKVLSRLRTATPLQVNLQVRIAEVNRS 193

Query: 209 ILKQIGFQHSITGSSSGPSKS--FAADFGGK----------------FVSEGGDFSVKGV 250
           ++K++   + +T  + GP  +      FGG+                  +  G  S+ G 
Sbjct: 194 LVKELS-GNLLTRDTDGPLGNGFLGGVFGGRQAGTITTDANGNTIYSITTPPGTRSLAGA 252

Query: 251 LDRFSFETV--LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
              F  + +  L   ER+  + TLA+P LTAISG++A F +GG+       +  G T++ 
Sbjct: 253 GRLFGLDLIASLDIGERSGLVATLAQPNLTAISGETADFLAGGEFPVPIPGNFAG-TTIE 311

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPS 364
              YGV L +TPTVLS GRI LR++ EVSE      I +    +P+  +R+A+TTVEL S
Sbjct: 312 YRKYGVSLAYTPTVLSNGRISLRVRPEVSELSTEGAIEMQGFQIPALTIRRAETTVELGS 371

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G + ++AGLL +      + +P L  +P+LG LF++  F R ETE+ I  TP+LV+PV+ 
Sbjct: 372 GESFMIAGLLNNRSIGAIDKMPGLGDVPLLGTLFKSDSFRRGETELVIVVTPYLVEPVSA 431

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVN 449
            D+  P D +   DD +    N+ +
Sbjct: 432 NDIKLPTDAFRDADDLQRLLLNQTS 456


>gi|78060314|ref|YP_366889.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
 gi|77964864|gb|ABB06245.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
          Length = 652

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/407 (30%), Positives = 212/407 (52%), Gaps = 18/407 (4%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+ G  G   
Sbjct: 100 VSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQGRSGACR 159

Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +D+ +  D   L+ +L + + +  +I V   + T+VL G V +   +Q+A++++  + 
Sbjct: 160 V-IDVAVGADAGGLQASLMQLMPNERDIHVSTAAGTIVLAGTVSSSMAAQQAMQIARAYG 218

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
             +G       +   V+N+LN+    QV L+V +AEV + ++ Q+G   +I G     S 
Sbjct: 219 DSAGDPAGGGKAGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSALNIQGGFGSWSG 278

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           +  ++     V+ G  FS     +   F     A      ++ LAEP L  ISGQ A+F 
Sbjct: 279 ALVSNLLAG-VATGIAFSKA---NNKPFNLAADAQNTDNLVKILAEPNLVTISGQEATFL 334

Query: 289 SGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE------P 339
           +GG+       SS   TS  T    ++GV L FTPTVLS GRI L++  EVSE       
Sbjct: 335 AGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLSNGRISLKVAPEVSELSQTGVT 394

Query: 340 VIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           +   N G    +P    R+A TTV++  G T  + GL+KD+     + +P + +IP+LGA
Sbjct: 395 LSATNIGGTSILPLITTRRASTTVQMGDGETFAIGGLIKDNGTGALKALPGVGEIPVLGA 454

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           L R++ F ++ TE+    TP LVKP+   D+  P D +S  ++   +
Sbjct: 455 LLRSTSFQQDRTELIFVITPHLVKPLQTADVPLPTDSFSKPNEVDVY 501


>gi|254487886|ref|ZP_05101091.1| bacterial type II/III secretion system protein [Roseobacter sp.
           GAI101]
 gi|214044755|gb|EEB85393.1| bacterial type II/III secretion system protein [Roseobacter sp.
           GAI101]
          Length = 486

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/458 (28%), Positives = 228/458 (49%), Gaps = 44/458 (9%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V  G  + + + +N+ ++++  +   ++ +++P  AD+   S RT+Y+ GK+ G   + L
Sbjct: 44  VNRGTNRALEVPMNRAVVVESDIPFAELSIANPGIADISSLSDRTIYVLGKSPGLTTLTL 103

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +   G+ + N+D+ +  DI+  +  LR+ +    I V   +D +VL G+V + Q  QRA+
Sbjct: 104 LDAAGQLITNVDVRVASDISEFKERLRQILPGEKIEVRTANDGIVLSGIVSSTQGLQRAL 163

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +L+E +            + ++V NL+++ G  QV LKV  AE++R + K +    ++ G
Sbjct: 164 DLAERY------------APERVSNLMSVGGIQQVMLKVRFAEMQRSVSKSLSASLALNG 211

Query: 222 ------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET-------VLHA 262
                       +++  S + A    G   +   +     VL  F F         +L A
Sbjct: 212 LLGSDLAINGGTNTTNGSTAIANSLNGSTPTTNSN--AGAVL--FGFNAGSTQVGLLLEA 267

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE+  A+R LAEP L A+SGQ A+F +GG++    VS S    SV    +GV + F P V
Sbjct: 268 LEQKGAVRFLAEPNLVALSGQEATFLAGGEYPVP-VSQSGDRISVEYKPFGVEMSFIPRV 326

Query: 323 LSPGRIGLRIQTEVS--EPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           +    I L ++  VS  +P   V+ G   D+ ++  R+  TTVE+  G +  +AGLL DD
Sbjct: 327 VDKNLINLELKAAVSAIDPSNSVSLGNGFDISAFTRRETSTTVEMRDGESFAIAGLLTDD 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                  +P +  +P+LGALFR++ + R +TE+ I  T  LV P     L+ P D     
Sbjct: 387 FTDTSRQLPWIGDVPVLGALFRSANYQRSQTELVIIITAHLVTPTRGDALALPTDRIKPP 446

Query: 438 DDAKAFFFNRVN---KIYGPKEASEVEGQNYKGAIGFI 472
            + + F   R +   K      A EV  Q++ G+ G++
Sbjct: 447 TENELFLSGRTSSGGKAPTRGAAGEVAKQDFSGSYGYV 484


>gi|254466441|ref|ZP_05079852.1| bacterial type II/III secretion system protein [Rhodobacterales
           bacterium Y4I]
 gi|206687349|gb|EDZ47831.1| bacterial type II/III secretion system protein [Rhodobacterales
           bacterium Y4I]
          Length = 468

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 231/453 (50%), Gaps = 41/453 (9%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V+ G    + + +N+ ++++  +   ++ +++P+ AD+   S RT+Y+ GK+ G   + L
Sbjct: 33  VKKGTAATLDVPMNRAVVVESEIPFAELSIANPSIADISSLSDRTIYVLGKSPGLTTLTL 92

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +   G+ + N+D+ +  D+   +  LR+ + +  I V   +D +VL G V +    QRA+
Sbjct: 93  LDGSGRLITNVDVRVAADVTEFKQRLRQILPNEKIEVRTANDGIVLSGTVSSSARLQRAL 152

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK----QIGF-- 215
           +L+E +            + ++V NL+++ G  QV LKV  AE++R + K     +GF  
Sbjct: 153 DLAERY------------APERVSNLMSVGGVQQVMLKVRFAEMQRSVSKSLSASLGFNG 200

Query: 216 --------QHSITGSSSGPSKSFAADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALE 264
                    ++   +S   + S A +      + G     F+   V        +L ALE
Sbjct: 201 GTGNGRTGGYNTLNTSGALANSLAGNIPAANENTGAFLFGFNAGSV----QVSLLLEALE 256

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           +   +RTLAEP L+A+SGQ A F +GG++    V+   G  ++    +G+ L+F P V+ 
Sbjct: 257 QKGVVRTLAEPNLSALSGQEAKFLAGGEYPVP-VAQEGGVITIEFKPFGIELNFIPRVID 315

Query: 325 PGRIGLRIQTEVS--EPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
              I L +   VS  +P   + ++   + ++  R+  TTVE+  G +  +AGL++D+   
Sbjct: 316 GDLINLELNAAVSAIDPTNSLELSGLTIDAFSRRETSTTVEMRDGESFAIAGLIRDEFLD 375

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               +P L  +P+LGALFR++ + RE+TE+ I  +  LV P     L+ P D  +   + 
Sbjct: 376 NSSQLPWLGDVPVLGALFRSADYQREQTELVIIVSAHLVTPTRGEALTLPTDRVAPPSEK 435

Query: 441 KAFFFNRVNK-IYGPKEASEVEGQNYKGAIGFI 472
             F F R ++   GP  A+EV  Q++ G+ G++
Sbjct: 436 DLFLFGRTSRNRAGP--AAEVAKQDFNGSYGYV 466


>gi|298487093|ref|ZP_07005143.1| type II/III secretion system protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158336|gb|EFH99406.1| type II/III secretion system protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 437

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/410 (33%), Positives = 209/410 (50%), Gaps = 24/410 (5%)

Query: 44  IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           I KG K    ++IG  +V+    PVD   V+V++P  AD+ V SP  +Y+FGK  GQ ++
Sbjct: 28  IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKAAGQTSL 85

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I +G +G++   L + +    A +   L+     S  R+      V+  G   ++QD   
Sbjct: 86  IALGSEGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 142

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A +L+   LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   + 
Sbjct: 143 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNA 195

Query: 220 ---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
               G+ S    +  A             S        + + +L AL+    +  LAEP 
Sbjct: 196 LFNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPN 255

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           +TA++GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ EV
Sbjct: 256 ITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEV 314

Query: 337 SEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           S  +    + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +P
Sbjct: 315 SSLMSTITLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMP 374

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           ILG LFR+ RF R ETE+ I  TP+LV+PV  R ++ P D       A A
Sbjct: 375 ILGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 424


>gi|253996769|ref|YP_003048833.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
 gi|253983448|gb|ACT48306.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
          Length = 513

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 240/475 (50%), Gaps = 44/475 (9%)

Query: 1   MRYLQRTFFT-MMSIFLFSSNPSVAKLPPIKEAN-----------AAVINISDVEIGKGK 48
           +RY        M+ + L S  P  A  P     N           AA    S  EI    
Sbjct: 16  LRYCVSNLLAAMLGVTLLSIAPLHAAEPQANMQNILVAAVTPKKVAARPTPSSTEIVPSV 75

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++S+G + ++ L   V++Q V V D     V V SPR + L  K +G   VI++   G+ 
Sbjct: 76  ELSLGQSHLVRLPAGVNLQRVKVDDDKIVQVDVTSPREVVLHAKTIGSTMVIILDKSGQS 135

Query: 109 MLNLDILI-----ERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVE 162
            + +D+ +       D A L+  L++ + +   I+V   ++++VL G V     + +A+ 
Sbjct: 136 AV-MDVRVVAAATAMDAASLQTKLQQIMPNEKGIKVSTAAESLVLSGTVSDAVKADKAMA 194

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
           L+E +    G+++      KKV+N+L +A   QV L+V +AEV +++L ++G     + S
Sbjct: 195 LAEAY---GGKDK-----DKKVINMLQVAAPQQVMLEVKMAEVSKNLLDKLGASFGASRS 246

Query: 223 SSGPSKSFAADF----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           + G + + A+ F    G   +S GG  ++     + +    + A  +   ++ LAEP + 
Sbjct: 247 NGGVAYAIASGFLSLTGADPLSPGGLLTIT----KGNTAIKVDAENKDGVVKILAEPNII 302

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATS----VTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           AISGQ  SF +GG+       S+TG  S    +   D+GV L FTPTVL  G I LR+  
Sbjct: 303 AISGQEGSFLAGGKIFIPVPQSNTGGGSNVLTLEERDFGVGLKFTPTVLEEGMINLRVAP 362

Query: 335 EVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           EVSE   G   V     PS+ VR+  TTV+L  G +  +AGL+K+++ +     P+L +I
Sbjct: 363 EVSELNQGGTTVGGSVFPSFTVRRVATTVQLRDGQSFAIAGLIKNNVTENVRRFPILGEI 422

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
           PILGALFR+S F  ++TE+    TP LVKP+   D + P D ++    A+ FF N
Sbjct: 423 PILGALFRSSSFQEDKTELLFVITPRLVKPLP-PDFALPTDKFTPPSKAE-FFLN 475


>gi|167719684|ref|ZP_02402920.1| type II/III secretion system protein [Burkholderia pseudomallei
           DM98]
 gi|167902788|ref|ZP_02489993.1| type II/III secretion system protein [Burkholderia pseudomallei
           NCTC 13177]
          Length = 448

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + + +L   ++++ 
Sbjct: 35  MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 94

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L        + +     ++++ G V +  D+   V+  + +L Q        
Sbjct: 95  DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 147

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S          F G+ 
Sbjct: 148 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 201

Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +          S  G FSV G     R+S + VL AL++   I  LAEP LTAISGQ+AS
Sbjct: 202 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 261

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
           F +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVSE  P   V 
Sbjct: 262 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 321

Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+LG LF +  
Sbjct: 322 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 381

Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430
           +  ++TE+ +  TP++V+P        A+ D++RP
Sbjct: 382 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 416


>gi|76811933|ref|YP_333435.1| RhcC2 [Burkholderia pseudomallei 1710b]
 gi|126441311|ref|YP_001058908.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|126453026|ref|YP_001066150.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|134282366|ref|ZP_01769071.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|217421397|ref|ZP_03452901.1| type II/III secretion system protein [Burkholderia pseudomallei
           576]
 gi|226196310|ref|ZP_03791892.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|242314528|ref|ZP_04813544.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|254179872|ref|ZP_04886471.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|254188722|ref|ZP_04895233.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254197611|ref|ZP_04904033.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|254261104|ref|ZP_04952158.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
 gi|254297713|ref|ZP_04965166.1| type II/III secretion system protein [Burkholderia pseudomallei
           406e]
 gi|76581386|gb|ABA50861.1| RhcC2 [Burkholderia pseudomallei 1710b]
 gi|126220804|gb|ABN84310.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|126226668|gb|ABN90208.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|134246404|gb|EBA46493.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|157806781|gb|EDO83951.1| type II/III secretion system protein [Burkholderia pseudomallei
           406e]
 gi|157936401|gb|EDO92071.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169654352|gb|EDS87045.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|184210412|gb|EDU07455.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|217395139|gb|EEC35157.1| type II/III secretion system protein [Burkholderia pseudomallei
           576]
 gi|225931527|gb|EEH27532.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|242137767|gb|EES24169.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|254219793|gb|EET09177.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
          Length = 482

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + + +L   ++++ 
Sbjct: 69  MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 128

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L        + +     ++++ G V +  D+   V+  + +L Q        
Sbjct: 129 DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 181

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S          F G+ 
Sbjct: 182 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 235

Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +          S  G FSV G     R+S + VL AL++   I  LAEP LTAISGQ+AS
Sbjct: 236 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 295

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
           F +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVSE  P   V 
Sbjct: 296 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 355

Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+LG LF +  
Sbjct: 356 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 415

Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430
           +  ++TE+ +  TP++V+P        A+ D++RP
Sbjct: 416 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 450


>gi|326388864|ref|ZP_08210446.1| type II and III secretion system protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206464|gb|EGD57299.1| type II and III secretion system protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 565

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 135/424 (31%), Positives = 213/424 (50%), Gaps = 40/424 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           ISIG  +++ L  P ++ DV V++   ADV V S   +Y+FGK  G+  V      G  +
Sbjct: 78  ISIGRGELVTL--PGNMTDVFVANENIADVQVKSGNQLYIFGKAGGETTVYASNGRGDVI 135

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            + +I +  ++  ++  L   + +++I    +++TV+L G V   +D+  A  L + F+ 
Sbjct: 136 WSANIRVGNNLDSIDQMLHMAMPEAHIATATMNNTVLLTGTVSAPEDAAEAERLVKAFVG 195

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----- 224
           +             V++ L +A   QV L V  AEV R + + I    +   ++S     
Sbjct: 196 E----------KTNVISRLKMATPLQVNLHVKFAEVSRTLTRSIQSNWTTADATSGLKFG 245

Query: 225 -GPSKSFAADF--GGKF---------------VSEGGDFSVKGVLDRFSFETVLHALERA 266
            G  +SF   +  GG                 VS G   ++   +   SF   L   E  
Sbjct: 246 LGQGRSFFPQYVPGGPLGMGTATTTGATAVSPVSTGTTLALASKVFGLSFLAALDLAESI 305

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
             + TLAEP LTA+SG++A F +GG++    VSS  G   V   +YGV L +TPTVL+ G
Sbjct: 306 GLVSTLAEPNLTALSGETAEFLAGGEYPIP-VSSGLGTVPVQYKNYGVSLAYTPTVLANG 364

Query: 327 RIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           RI LR++ EVSE      + +N   +P+  VR+A+TT+EL SG + ++AGLLK+  Q   
Sbjct: 365 RISLRVRPEVSELSSDGAVSLNGYSVPALSVRRAETTIELGSGQSFMIAGLLKNSSQNTI 424

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
             +P    +PILG+LFR++ + R ETE+ I  TP+LV PV   ++  P D +      K 
Sbjct: 425 AKMPGAGDLPILGSLFRSTSYQRGETELVIIVTPYLVNPVDPSEIHLPTDGFKSAGALKQ 484

Query: 443 FFFN 446
              N
Sbjct: 485 ILGN 488


>gi|167824270|ref|ZP_02455741.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
 gi|167919049|ref|ZP_02506140.1| type II/III secretion system protein [Burkholderia pseudomallei
           BCC215]
          Length = 444

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + + +L   ++++ 
Sbjct: 31  MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 90

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L        + +     ++++ G V +  D+   V+  + +L Q        
Sbjct: 91  DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 143

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S          F G+ 
Sbjct: 144 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 197

Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +          S  G FSV G     R+S + VL AL++   I  LAEP LTAISGQ+AS
Sbjct: 198 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 257

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
           F +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVSE  P   V 
Sbjct: 258 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 317

Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+LG LF +  
Sbjct: 318 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 377

Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430
           +  ++TE+ +  TP++V+P        A+ D++RP
Sbjct: 378 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 412


>gi|167738675|ref|ZP_02411449.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
          Length = 434

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + + +L   ++++ 
Sbjct: 21  MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 80

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L        + +     ++++ G V +  D+   V+  + +L Q        
Sbjct: 81  DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 133

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S          F G+ 
Sbjct: 134 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 187

Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +          S  G FSV G     R+S + VL AL++   I  LAEP LTAISGQ+AS
Sbjct: 188 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 247

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
           F +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVSE  P   V 
Sbjct: 248 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 307

Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+LG LF +  
Sbjct: 308 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 367

Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430
           +  ++TE+ +  TP++V+P        A+ D++RP
Sbjct: 368 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 402


>gi|53719431|ref|YP_108417.1| putative fimbriae assembly-related protein [Burkholderia
           pseudomallei K96243]
 gi|167815898|ref|ZP_02447578.1| RhcC2 [Burkholderia pseudomallei 91]
 gi|167845816|ref|ZP_02471324.1| RhcC2 [Burkholderia pseudomallei B7210]
 gi|52209845|emb|CAH35817.1| putative fimbriae assembly-related protein [Burkholderia
           pseudomallei K96243]
          Length = 439

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + + +L   ++++ 
Sbjct: 26  MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 85

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L        + +     ++++ G V +  D+   V+  + +L Q        
Sbjct: 86  DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 138

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S          F G+ 
Sbjct: 139 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 192

Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +          S  G FSV G     R+S + VL AL++   I  LAEP LTAISGQ+AS
Sbjct: 193 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 252

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
           F +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVSE  P   V 
Sbjct: 253 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 312

Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+LG LF +  
Sbjct: 313 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 372

Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430
           +  ++TE+ +  TP++V+P        A+ D++RP
Sbjct: 373 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 407


>gi|71733713|ref|YP_274717.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71554266|gb|AAZ33477.1| type III secretion component, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 437

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 136/410 (33%), Positives = 207/410 (50%), Gaps = 24/410 (5%)

Query: 44  IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           I KG K    ++IG  +V+    PVD   V+V++P  AD+ V SP  +Y+FGK  GQ ++
Sbjct: 28  IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKAAGQTSL 85

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I +  DG++   L + +    A +   L+     S  R+      V+  G   ++QD   
Sbjct: 86  IALDSDGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 142

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A +L+   LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   + 
Sbjct: 143 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNA 195

Query: 220 ---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
               G+ S    +  A             S        + + +L AL+    +  LAEP 
Sbjct: 196 LFNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPN 255

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           +TA++GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ EV
Sbjct: 256 ITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEV 314

Query: 337 SE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           S       + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +P
Sbjct: 315 SSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMP 374

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           ILG LFR+ RF R ETE+ I  TP+LV+PV  R ++ P D       A A
Sbjct: 375 ILGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 424


>gi|167911033|ref|ZP_02498124.1| type II/III secretion system protein [Burkholderia pseudomallei
           112]
          Length = 438

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + + +L   ++++ 
Sbjct: 25  MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 84

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L        + +     ++++ G V +  D+   V+  + +L Q        
Sbjct: 85  DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 137

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S          F G+ 
Sbjct: 138 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 191

Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +          S  G FSV G     R+S + VL AL++   I  LAEP LTAISGQ+AS
Sbjct: 192 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 251

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
           F +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVSE  P   V 
Sbjct: 252 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 311

Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+LG LF +  
Sbjct: 312 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 371

Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430
           +  ++TE+ +  TP++V+P        A+ D++RP
Sbjct: 372 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 406


>gi|149186255|ref|ZP_01864569.1| type II secretion system protein [Erythrobacter sp. SD-21]
 gi|148830286|gb|EDL48723.1| type II secretion system protein [Erythrobacter sp. SD-21]
          Length = 522

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 135/427 (31%), Positives = 223/427 (52%), Gaps = 51/427 (11%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           ++I + + +  ++ VP ++ DV +S+   ADV V S R +YLFGK+ G+  V      G 
Sbjct: 37  QEIVLSIGRGELVNVPGNMADVFISNENVADVQVKSRRQLYLFGKSGGETTVYASNAAGD 96

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSET 166
            +   ++ +  +I  ++  L   + ++ I V  M ++TV+L G V   +D+  A  L + 
Sbjct: 97  IIWAANVRVGSNIGSIDQMLSLAMPEAKINVATMGNNTVLLTGTVAAPEDAADAQSLVQA 156

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG- 225
           ++ + G N         V++ L +A   QV L+V IAEV R +++ IG   +   SSSG 
Sbjct: 157 YVGE-GTN---------VISRLRMATPLQVNLQVRIAEVSRSVVRAIGVNLATVDSSSGF 206

Query: 226 -----PSKSFAADFGGKFVSE------------GGDFSVKG--VLDRFSFETVLHAL--- 263
                  +   + F   FV+             G +F  +G  ++D+ +  + L A    
Sbjct: 207 QFGVGQGRGAVSQFQPSFVNPVTGERIQGPLAVGQEFEGEGATIIDQITPGSTLGAFGNL 266

Query: 264 ------------ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                       E    + TL++P LTA+SG++A F +GG+     +S   G T++   +
Sbjct: 267 LGLDIGAALDLAETQGLVTTLSQPNLTALSGETAEFLAGGEFPIP-LSQGLGTTTIEYKN 325

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           YGV L +TPTVL+ GRI +R++ EVSE      I +N   +P+   R+A+TTVEL SG +
Sbjct: 326 YGVSLAYTPTVLANGRISIRVRPEVSELSSQGSITLNGFQVPALITRRAETTVELGSGQS 385

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
            ++AGLL ++ Q   E  P L  +P++G LFR++ + + ETE+ I  TP+LVKPV   D+
Sbjct: 386 FMIAGLLSNNSQNSIEKAPGLGDVPVIGNLFRSTTYRKGETELVIVVTPYLVKPVNANDI 445

Query: 428 SRPDDHY 434
             P D Y
Sbjct: 446 RLPTDGY 452


>gi|121600042|ref|YP_993006.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|124383335|ref|YP_001026338.1| type II secretion system protein [Burkholderia mallei NCTC 10229]
 gi|126450127|ref|YP_001080388.1| RhcC2 [Burkholderia mallei NCTC 10247]
 gi|237812165|ref|YP_002896616.1| type II/III secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|254178619|ref|ZP_04885274.1| RhcC2 [Burkholderia mallei ATCC 10399]
 gi|254358540|ref|ZP_04974813.1| RhcC2 [Burkholderia mallei 2002721280]
 gi|121228852|gb|ABM51370.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|124291355|gb|ABN00624.1| putative type II secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|126242997|gb|ABO06090.1| RhcC2 [Burkholderia mallei NCTC 10247]
 gi|148027667|gb|EDK85688.1| RhcC2 [Burkholderia mallei 2002721280]
 gi|160699658|gb|EDP89628.1| RhcC2 [Burkholderia mallei ATCC 10399]
 gi|237503093|gb|ACQ95411.1| type II/III secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 482

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + + +L   ++++ 
Sbjct: 69  MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 128

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L        + +     ++++ G V +  D+   V+  + +L Q        
Sbjct: 129 DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 181

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S          F G+ 
Sbjct: 182 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 235

Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +          S  G FSV G     R+S + VL AL++   I  LAEP LTAISGQ+AS
Sbjct: 236 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 295

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
           F +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVSE  P   V 
Sbjct: 296 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 355

Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+LG LF +  
Sbjct: 356 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 415

Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430
           +  ++TE+ +  TP++V+P        A+ D++RP
Sbjct: 416 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 450


>gi|307294424|ref|ZP_07574268.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
 gi|306880575|gb|EFN11792.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
          Length = 503

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 142/484 (29%), Positives = 231/484 (47%), Gaps = 57/484 (11%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
           ++   + S+   S+  S+  LP   +A  A +N+S+       ++ + LNK  +L     
Sbjct: 5   KSLPMLASLLTLSAGASL--LPIQAQAQIASLNLSNAN--HAGQLDVPLNKSQVLTADRP 60

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
               LV +   ADV+  + R++Y+ GK +G  ++ L       +  +D+ +  D+  L+ 
Sbjct: 61  FAKALVGNAEIADVLPMTNRSVYVLGKKMGTTSLTLYDSRNIMIAVVDVAVGPDVVTLKR 120

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
            L   +    I   + +D+VVL G + +     RAV++++T+            +  KV+
Sbjct: 121 QLSDLLPGQPIGARISNDSVVLTGTLSSAAAVDRAVQIAKTY------------AGDKVV 168

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---------SGPSKSFAADFGG 236
           N++++    QV L+V  +E+ R   KQ G   +    S         +  S +  +D  G
Sbjct: 169 NMMSVGASQQVMLEVRFSEMSRGAAKQFGINTAFLSDSGKVVGGIGNAAQSSAILSDTNG 228

Query: 237 KFVSEGGDFSVKGVLDRF------------SFETVLHALERATAIRTLAEPTLTAISGQS 284
           + + +     +  +LD F            +  T L ALER   + TLAEPTL A+SG++
Sbjct: 229 RPIVD-----LSKILDSFGIGAANFSIGSLNITTALDALERKGVVTTLAEPTLVALSGET 283

Query: 285 ASFTSGGQH-----------LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           ASF +GG+                  +S  A ++    +GV L FTPTVL  G I L ++
Sbjct: 284 ASFLAGGEFPIPVAQSNSGGGGGGGGNSGNAITIEFKPFGVSLGFTPTVLDDGIINLVVE 343

Query: 334 TEVS--EPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            EVS  +P   + VN   +P  + R+A TT+EL  G +  LAGLL+ D Q      P+L 
Sbjct: 344 PEVSSIDPSASVTVNGLTIPGLQTRRASTTLELRDGQSFALAGLLRKDFQDTVRQFPILG 403

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
            IPI+GALFR+S F + ETE+ I  TP LVKP+   D++ P D      +   F   R +
Sbjct: 404 SIPIIGALFRSSGFQKSETELVIIVTPRLVKPMRAEDVALPTDRVKPPHELDLFLMGRTD 463

Query: 450 KIYG 453
           K  G
Sbjct: 464 KAVG 467


>gi|167894387|ref|ZP_02481789.1| type II/III secretion system protein [Burkholderia pseudomallei
           7894]
          Length = 426

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + + +L   ++++ 
Sbjct: 13  MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 72

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L        + +     ++++ G V +  D+   V+  + +L Q        
Sbjct: 73  DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 125

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S          F G+ 
Sbjct: 126 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 179

Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +          S  G FSV G     R+S + VL AL++   I  LAEP LTAISGQ+AS
Sbjct: 180 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 239

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
           F +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVSE  P   V 
Sbjct: 240 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 299

Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+LG LF +  
Sbjct: 300 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 359

Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430
           +  ++TE+ +  TP++V+P        A+ D++RP
Sbjct: 360 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 394


>gi|330876206|gb|EGH10355.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 437

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 134/410 (32%), Positives = 206/410 (50%), Gaps = 24/410 (5%)

Query: 44  IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           I KG K    ++IG  +V+    PVD   V+V++P  AD+ V SP  +Y+FGK  GQ ++
Sbjct: 28  IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKAAGQTSL 85

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I +  +G++   L + +    A +   L+     S  R+      V+  G   ++QD   
Sbjct: 86  IALDSEGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 142

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A +L+   LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   + 
Sbjct: 143 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNA 195

Query: 220 ---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
               G+ S    +                S        + + +L AL+    +  LAEP 
Sbjct: 196 LFNNGTFSFGLLTGGGLAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPN 255

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           +TA++GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ EV
Sbjct: 256 ITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEV 314

Query: 337 SE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           S       + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +P
Sbjct: 315 SSLMSTSTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMP 374

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           ILG LFR+ RF R ETE+ I  TP+LV+PV  R ++ P D       A A
Sbjct: 375 ILGNLFRSKRFQRNETELVILITPYLVEPVKARVVATPLDKQRAASTASA 424


>gi|78062906|ref|YP_372814.1| type II and III secretion system protein [Burkholderia sp. 383]
 gi|77970791|gb|ABB12170.1| type II and III secretion system protein [Burkholderia sp. 383]
          Length = 460

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 135/421 (32%), Positives = 216/421 (51%), Gaps = 42/421 (9%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +SI   K  +L +P     + V+DP  AD+ V SPRT+++FGK  G   +I +G + 
Sbjct: 33  GAALSIATGKGELLSLPEPATAMFVADPAIADIQVPSPRTVFVFGKKAGTTTLIALGANH 92

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +L   ++++ D A L+  L        + V     ++++ G V +  D+   ++    
Sbjct: 93  RPILRKTVIVQVDTASLQGVLDSRFPQLKLSVSGAPGSLMVSGKVPSAADADAVMQSLTP 152

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +L             +K++N L ++   QV L+V + EV R+I +Q+G    I  SS G 
Sbjct: 153 YLHDK----------EKIVNRLTLSRPIQVNLRVRVTEVSRNITQQLG----INWSSLGG 198

Query: 227 SKSFAAD-FGGKFV----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLA 273
           + +F    F G+ +          S  G FSV G     R+S + VL AL++   I  LA
Sbjct: 199 AGNFVGGLFNGRTLFDPTNGLFNLSPTGAFSVLGGFRAGRWSIDVVLDALDQEGLITMLA 258

Query: 274 EPTLTAISGQSASFTSGGQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           EP LTA+SG++ASF +GG+         SSTGA +V    +GV L FTPTVL+  RI L+
Sbjct: 259 EPNLTAMSGETASFLAGGEIPIPVAQAGSSTGAITVEFKPFGVSLDFTPTVLADNRISLK 318

Query: 332 IQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           ++ EVSE      +      +P   VR+ DTTVEL SG +  + GLL+         IP 
Sbjct: 319 VRPEVSEIDTNNSVTTGGVKVPGLTVRRVDTTVELSSGQSFAIGGLLQSQTADTVSQIPG 378

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-------AMRDLSRP--DDHYSVED 438
           L ++PI+G LF +  F   +TE+ +  TP++V+P        A+  ++RP  D  ++V+ 
Sbjct: 379 LGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQAIDTVARPSSDLEFAVQH 438

Query: 439 D 439
           +
Sbjct: 439 N 439


>gi|307293450|ref|ZP_07573296.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
 gi|306881516|gb|EFN12732.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
          Length = 499

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/430 (32%), Positives = 224/430 (52%), Gaps = 34/430 (7%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
           NAA  ++ D  I     +S+G +KVI L  P  + DV++ DP   DV V S   +YL  K
Sbjct: 36  NAAPASMQDNAI----LLSVGGSKVINL--PAKMSDVVIGDPDVVDVHVRSQNQLYLIAK 89

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G+  V     +GK + +  + +  ++  ++  L+  + ++ I V  ++  V+L G + 
Sbjct: 90  KAGETTVFATAINGKVLFSGTVRVGNNLTSIDDMLKLAMPNAEIAVNKMNGMVLLTGTIA 149

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
             +D+  A  L++ F+ +             V++ L  A   QV L+V IAEV +D+  +
Sbjct: 150 APEDAAEAERLTQAFVGKE----------VTVVSRLRTATPLQVNLQVKIAEVSKDVGHK 199

Query: 213 IGFQHS-----------ITGSSSGPSKSFAADFGG--KFVSEGGDFSVKGVLDRFSFE-- 257
           IG                 G  +  + +F +  GG   F ++GG +S+ GV      +  
Sbjct: 200 IGMNWKSQDLTGGKWAGGIGGGTRDAITFNSGGGGTFNFTADGG-YSLAGVARVLGLDLG 258

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
            VL   E +    TLA+P LT++SG++ASF +GG++ Y TVS+ T   S+    YGV L 
Sbjct: 259 AVLDLAESSGLATTLAQPNLTSLSGETASFLAGGEYPY-TVSNGTQGNSIEFKQYGVQLA 317

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           FTPTVL+ GRI LR++  VS  +    +  +P+ R R A+TTVEL SG   ++AGLL +D
Sbjct: 318 FTPTVLADGRISLRVRPTVSS-LDFSVSSSVPALRSRTAETTVELGSGQAFMIAGLLNND 376

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                  +P +  +PILG+LF++  F R ETE+ I  TP+LVKP+   D+  P D +   
Sbjct: 377 TANNINKVPGIGNLPILGSLFKSRNFQRHETELVIVVTPYLVKPMNASDVRLPTDGFRNA 436

Query: 438 DDAKAFFFNR 447
           ++ +  F  +
Sbjct: 437 NEGQGLFLQQ 446


>gi|320324504|gb|EFW80581.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328376|gb|EFW84379.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 429

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 135/410 (32%), Positives = 207/410 (50%), Gaps = 24/410 (5%)

Query: 44  IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           I KG K    ++IG  +V+    PVD   V+V++P  AD+ V SP  +Y+FG+  GQ ++
Sbjct: 20  IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGQAAGQTSL 77

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I +  DG++   L + +    A +   L+     S  R+      V+  G   ++QD   
Sbjct: 78  IALDSDGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 134

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A +L+   LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   + 
Sbjct: 135 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNA 187

Query: 220 ---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
               G+ S    +  A             S        + + +L AL+    +  LAEP 
Sbjct: 188 LFNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPN 247

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           +TA++GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ EV
Sbjct: 248 ITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEV 306

Query: 337 SE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           S       + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +P
Sbjct: 307 SSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQHESSQDMDKVPMLGDMP 366

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           ILG LFR+ RF R ETE+ I  TP+LV+PV  R ++ P D       A A
Sbjct: 367 ILGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 416


>gi|56697919|ref|YP_168290.1| type II/III secretion system protein [Ruegeria pomeroyi DSS-3]
 gi|56679656|gb|AAV96322.1| bacterial type II/III secretion system protein [Ruegeria pomeroyi
           DSS-3]
          Length = 475

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 228/451 (50%), Gaps = 33/451 (7%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V+ G  + + + +N+ I+++      ++ +++   AD+   S RT+Y+ GK+ G   + L
Sbjct: 40  VKQGAAETLDVPMNRAIVVESETPFAELSIANAGIADISSLSDRTIYVLGKSPGLTTLSL 99

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
               G+ + N+++ +  D+A  +  L++ + +  I V   +D +VL G   +    QRA+
Sbjct: 100 FDAGGRLITNVNVRVSFDVAEFKERLKQILPNEKIEVRTANDGIVLSGTASSTARLQRAL 159

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +L+E +            + ++V NL+++AG  QV LKV  AE++R + K +     ++G
Sbjct: 160 DLAERY------------APERVSNLMSVAGVQQVMLKVRFAEMQRSVSKSLSASLGVSG 207

Query: 222 -------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-----FETVLHALERATAI 269
                  ++   S S     GG   +   +     +L  FS        +L ALER   +
Sbjct: 208 GNIVGGLNTLNSSGSLTNAIGGSIPALNDN--AGAILFGFSAGSTQVRLLLEALERKGVV 265

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           RTLAEP L+A+SGQ A F +GG++    V+   G  +V    +GV + F P V+    I 
Sbjct: 266 RTLAEPNLSALSGQEAKFLAGGEYPIP-VAQRDGLFTVEYKPFGVEMAFIPRVVDGDLIN 324

Query: 330 LRIQTEVS--EP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L +   VS  +P   + VN  D+ +++ R+  TTVEL  G +  +AGL++D+     + +
Sbjct: 325 LELLAAVSSLDPNNSVTVNGFDIAAFQRRETSTTVELKDGESFAIAGLIEDEFLDNNQQL 384

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P L  +P+LGALFR++ + R +TE+ I  T  LV P     L+ P D      +A  F  
Sbjct: 385 PWLGDVPVLGALFRSANYQRSQTELVIIITAHLVSPTRGEALALPTDRVKPPSEADLFLR 444

Query: 446 NRVNKIYGPK--EASEVEGQNYKGAIGFIYK 474
            +  +    +   ASEV  Q++ G+ G++ +
Sbjct: 445 GKTARTERARGGAASEVARQDFSGSYGYVLE 475


>gi|99082186|ref|YP_614340.1| type II and III secretion system protein [Ruegeria sp. TM1040]
 gi|99038466|gb|ABF65078.1| Hypothetical 443 kDa protein y4xJ [Ruegeria sp. TM1040]
          Length = 497

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 225/460 (48%), Gaps = 48/460 (10%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
           IS ++ G    + + +N+ ++++  V   ++ +++P+ AD+   S RT+Y+ GK+ G   
Sbjct: 58  ISVLKKGTNAVLDVPMNRAVVVEADVPFAELSIANPSIADISSLSDRTIYVLGKSPGLTT 117

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           + L+   G  + N+D+ +  D++  +  L++ + +  I V   +D +VL G V + Q  Q
Sbjct: 118 LTLLDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSGTVSSAQRLQ 177

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           RA++L+E +            +  +V NL+ + G  QV LKV  AE+ R + K +G    
Sbjct: 178 RALDLAERY------------APDRVSNLMTVGGIQQVMLKVRFAEMERSVSKSLGGSML 225

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---------------------VLDRFSFE 257
           I  S    +        G F + GG+ ++ G                      +    F 
Sbjct: 226 IRSSDGAIAT-------GSFQNRGGNGNIFGDSVTSPVQLQSETLGAALFGFDIGAVQFN 278

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
            +L ALE+   +RTLAEP L+A+SGQ A+F +GG++    V+   G  +V    +G+ L+
Sbjct: 279 VLLEALEQKGLVRTLAEPNLSALSGQEANFLAGGEYPVP-VAQEDGVITVEFKPFGIELN 337

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-----RKADTTVELPSGGTIVLAG 372
           F P V+    I L ++  VS  +   N+     + +     R+  TTVEL  G +  +AG
Sbjct: 338 FIPRVVDGDLINLELKAAVSA-IDTTNSATFDGFSINAFSRRETATTVELRDGESFAIAG 396

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L++D+ +     +P L  +P+LGALFR++ + R ++E+ I  +  LV P     L+ P D
Sbjct: 397 LIEDEFRDGAAQVPWLGDVPVLGALFRSADYARNQSELVIIVSAHLVTPTRGEALALPTD 456

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
                 +   F F +  +      A EV  Q++ G+ G++
Sbjct: 457 RIRPPSEKNLFLFGQTERAQA-GAAGEVANQDFNGSYGYL 495


>gi|254475652|ref|ZP_05089038.1| type II and III secretion system protein:Transport-associated
           [Ruegeria sp. R11]
 gi|214029895|gb|EEB70730.1| type II and III secretion system protein:Transport-associated
           [Ruegeria sp. R11]
          Length = 452

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/457 (28%), Positives = 230/457 (50%), Gaps = 49/457 (10%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V+ G    + + +N+ ++++  V   ++ +++P+ AD+   S RT+Y+ GK+ G  +   
Sbjct: 17  VKKGTSSNLEVPMNRAVVVESDVPFSELSIANPSIADISSLSDRTIYVLGKSPGPDHPHA 76

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
            G  G+ + N+D+ +  D++  +  LR+ +    I V   +D +VL G+V +    QRA+
Sbjct: 77  FGCVGRLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGIVLSGVVSSSARLQRAL 136

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ--------- 212
           +L+E +            +  +V NL+++ G  QV LKV  AE++R + K          
Sbjct: 137 DLAERY------------APDRVSNLMSVGGVQQVMLKVRFAEMQRTVSKSLSASLGVNG 184

Query: 213 ------------IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
                       +  Q ++T S +G +   A D  G FV     F        F    +L
Sbjct: 185 GNSVGVNGGTSTLNTQGALTNSLTG-NIPAANDNTGAFV-----FGFNA--GAFQVNLLL 236

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            ALE+   +RTLAEP L+A+SGQ A F +GG++    V+   G  ++    +G+ L+F P
Sbjct: 237 EALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDGVITIEFKPFGIELNFIP 295

Query: 321 TVLSPGRIGLRIQTEVS--EPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            V+    I L ++  VS  +P   I +N   + ++  R++ TTVE+  G +  +AGL++D
Sbjct: 296 RVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRESVTTVEMRDGESFAIAGLIRD 355

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           + +     +P +  +P+LG+LFR++ + R +TE+ I  +  LV P     LS P D    
Sbjct: 356 EFRDNSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLVTPTRGEALSLPTDRIRP 415

Query: 437 EDDAKAFFFNRVNKIY-GPKEASEVEGQNYKGAIGFI 472
             +   F F  V +   GP  ASEV  Q++ G+ G++
Sbjct: 416 PSETDLFLFGNVARERKGP--ASEVAKQDFNGSYGYV 450


>gi|289624387|ref|ZP_06457341.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646614|ref|ZP_06477957.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868629|gb|EGH03338.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 429

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/410 (32%), Positives = 207/410 (50%), Gaps = 24/410 (5%)

Query: 44  IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           I KG K    ++IG  +V+    PVD   V+V++P  AD+ V SP  +Y+FGK  GQ ++
Sbjct: 20  IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKAAGQTSL 77

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I +  +G++   L + +    A +   L+     S  R+      V+  G   ++QD   
Sbjct: 78  IALDSEGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 134

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A +L+   LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   + 
Sbjct: 135 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNA 187

Query: 220 ---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
               G+ S    +  A             S        + + +L AL+    +  LAEP 
Sbjct: 188 LFNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPN 247

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           +TA++GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ EV
Sbjct: 248 ITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEV 306

Query: 337 SE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           S       + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +P
Sbjct: 307 SSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMP 366

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           ILG LFR+ RF R ETE+ I  TP+LV+PV  R ++ P D       A A
Sbjct: 367 ILGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 416


>gi|296284552|ref|ZP_06862550.1| type II and III secretion system protein [Citromicrobium
           bathyomarinum JL354]
          Length = 502

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 219/451 (48%), Gaps = 52/451 (11%)

Query: 26  LPPIKEANAAVINISDV--EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
           +P + +A + V    D+   IGKG+          ++ VP  + DV +++ + AD+ V S
Sbjct: 15  VPTMADAQSVVRPTQDIVLSIGKGE----------LINVPGSMADVFIANDSIADIQVKS 64

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE-MVS 142
            R +YLFGK+ G+  V      G  +   ++ +  +I  L+  L   +  + I V  M S
Sbjct: 65  QRQLYLFGKSGGETTVYASNAAGDVIWAANVRVGSNIGSLDQMLALAMPQAKISVATMGS 124

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
           +TV+L G V   +D+  A  L   FL               V+  L  A   QV L+V  
Sbjct: 125 NTVLLTGTVANPEDAAEAERLVSAFLGDE----------TNVIARLTTATPLQVNLQVRF 174

Query: 203 AEVRRDILKQIG-----------FQHSIT-GSSSGPS----------KSFAADFGGKFVS 240
           AEV R +++ IG           FQ  +T G +  P            +  +D       
Sbjct: 175 AEVSRSLVRAIGANLLSSDATNGFQFGVTRGRNFAPQYTPGGPVGVGVTGGSDGSTVITG 234

Query: 241 EGGDFSVKGVLDRFSFE--TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            G   ++ G+   F  +    L   E    + TL++P LTA+SG++A F +GG+     +
Sbjct: 235 NGTGATIAGLGSLFGMDLAAALDLAETNGLVSTLSQPNLTALSGETADFLAGGEFPIP-I 293

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVR 354
           S   GATSV   +YGV L +TPTVL+ GRI +R+  EVSE      + ++   +P+   R
Sbjct: 294 SQGLGATSVEYRNYGVKLTYTPTVLANGRISIRVSPEVSELSSQGAVSLDGVQIPALITR 353

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +A TTVEL SG + ++AGL+ ++ Q   +  P L  +PILG LFR++ F + ETE+ I  
Sbjct: 354 RASTTVELGSGQSFMIAGLMTNNSQSTIDKAPGLGDVPILGNLFRSNSFRKGETELVIVI 413

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           TP+LVKPV   D+  P D Y+  D      F
Sbjct: 414 TPYLVKPVDGNDIRLPTDGYNSPDTLSQLGF 444


>gi|197295153|ref|YP_002153694.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|195944632|emb|CAR57236.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 644

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/407 (30%), Positives = 213/407 (52%), Gaps = 18/407 (4%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ L K +++ +P  V++  + +P  A   + SP+T+Y+ G  VG  N+I+ G  G   
Sbjct: 100 VAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIVQGKSGACR 159

Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +D+ +  D   L+ +L + + +  +I V   + T+VL G V + Q +Q+AV+++  + 
Sbjct: 160 V-IDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQAVQIAHAYG 218

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
             +G           V+N+LN+    QV L+V +AEV + ++ Q+G   +I G     S 
Sbjct: 219 DSAGDAAGGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQGGFGSWSG 278

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           +  ++     V+ G  F+     +   F     A      ++ LAEP L  ISGQ A+F 
Sbjct: 279 ALVSNLLAG-VASGAVFNKA---NNRPFSIAADAQNTDNLVKILAEPNLVTISGQEATFL 334

Query: 289 SGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE------P 339
           +GG+       SS   TS  T    ++GV L FTPTVL+ GRI L++  EVSE       
Sbjct: 335 AGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVT 394

Query: 340 VIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           +   N G    +P    R+A TTV++  G +  + GL+KD+     + IP + ++P+LGA
Sbjct: 395 LSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGVGEVPVLGA 454

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           LFR++ F ++ TE+    TP LVKP+   D++ P D +S  ++   +
Sbjct: 455 LFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVY 501


>gi|83716099|ref|YP_440456.1| type II and III secretion system protein [Burkholderia
           thailandensis E264]
 gi|83649924|gb|ABC33988.1| Bacterial type II and III secretion system protein domain protein
           [Burkholderia thailandensis E264]
          Length = 679

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 219/421 (52%), Gaps = 31/421 (7%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           +G+   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ G
Sbjct: 96  MGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQG 155

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV 
Sbjct: 156 KSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVA 214

Query: 163 LSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           +++ +  ++               V+N+L +    QV L+V +AEV + ++ Q+G   ++
Sbjct: 215 IAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNL 274

Query: 220 TGSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            G     + +           G  VS+     + G +D         A      ++ LAE
Sbjct: 275 QGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSID---------AQNTDQPVKILAE 325

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLR 331
           P L  ISGQ A+F +GG+       SS   TS  T    ++GV L FTPTVLS GRI L+
Sbjct: 326 PRLVTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLK 385

Query: 332 IQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +  EVSE       +   N G    +P    R+A TTV++  G T  + GL+KD+ Q   
Sbjct: 386 VAPEVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTL 445

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           + +P + ++P+LGALFR++ F ++ TE+    TP LVKP+A  D+  P D ++  ++A  
Sbjct: 446 KALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADV 505

Query: 443 F 443
           +
Sbjct: 506 Y 506


>gi|167617230|ref|ZP_02385861.1| Bacterial type II and III secretion system protein domain protein
           [Burkholderia thailandensis Bt4]
          Length = 468

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 219/421 (52%), Gaps = 31/421 (7%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           +G+   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ G
Sbjct: 17  MGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQG 76

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV 
Sbjct: 77  KSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVA 135

Query: 163 LSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           +++ +  ++               V+N+L +    QV L+V +AEV + ++ Q+G   ++
Sbjct: 136 IAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNL 195

Query: 220 TGSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            G     + +           G  VS+     + G +D         A      ++ LAE
Sbjct: 196 QGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSID---------AQNTDQPVKILAE 246

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLR 331
           P L  ISGQ A+F +GG+       SS   TS  T    ++GV L FTPTVLS GRI L+
Sbjct: 247 PRLVTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLK 306

Query: 332 IQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +  EVSE       +   N G    +P    R+A TTV++  G T  + GL+KD+ Q   
Sbjct: 307 VAPEVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTL 366

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           + +P + ++P+LGALFR++ F ++ TE+    TP LVKP+A  D+  P D ++  ++A  
Sbjct: 367 KALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADV 426

Query: 443 F 443
           +
Sbjct: 427 Y 427


>gi|167579115|ref|ZP_02371989.1| Bacterial type II and III secretion system protein domain protein
           [Burkholderia thailandensis TXDOH]
          Length = 462

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 219/421 (52%), Gaps = 31/421 (7%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           +G+   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ G
Sbjct: 17  MGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQG 76

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV 
Sbjct: 77  KSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVA 135

Query: 163 LSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           +++ +  ++               V+N+L +    QV L+V +AEV + ++ Q+G   ++
Sbjct: 136 IAKAYSDRTNAAALGGGGGGPRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNL 195

Query: 220 TGSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            G     + +           G  VS+     + G +D         A      ++ LAE
Sbjct: 196 QGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSID---------AQNTDQPVKILAE 246

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLR 331
           P L  ISGQ A+F +GG+       SS   TS  T    ++GV L FTPTVLS GRI L+
Sbjct: 247 PRLVTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLK 306

Query: 332 IQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +  EVSE       +   N G    +P    R+A TTV++  G T  + GL+KD+ Q   
Sbjct: 307 VAPEVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTL 366

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           + +P + ++P+LGALFR++ F ++ TE+    TP LVKP+A  D+  P D ++  ++A  
Sbjct: 367 KALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADV 426

Query: 443 F 443
           +
Sbjct: 427 Y 427


>gi|170734868|ref|YP_001773982.1| type II and III secretion system protein [Burkholderia cenocepacia
           MC0-3]
 gi|169820906|gb|ACA95487.1| type II and III secretion system protein [Burkholderia cenocepacia
           MC0-3]
          Length = 646

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/407 (31%), Positives = 217/407 (53%), Gaps = 19/407 (4%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ L K +++ +P  V++  + +P  A   + SP+T+Y+ G  VG  N+I+ G  G   
Sbjct: 100 VAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIVQGRSGACR 159

Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +D+ +  D   L+ +L + + +  +I V   + T+VL G V + Q +Q+AV+++  + 
Sbjct: 160 V-IDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQAVQIAHAYG 218

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
             +G +         V+N+LN+    QV L+V +AEV + ++ Q+G   +I G     S 
Sbjct: 219 DSAG-DAAGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQGGFGSWSG 277

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           +  ++     V+ G  F+     +   F     A      ++ LAEP L  ISGQ A+F 
Sbjct: 278 ALVSNLLAG-VASGAVFNKA---NNKPFSIAADAQNTDNLVKILAEPNLVTISGQEATFL 333

Query: 289 SGGQHLYKTV-SSSTGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGV- 343
           +GG+       S S G +S+T  +  +GV L FTPTVL+ GRI L++  EVSE    GV 
Sbjct: 334 AGGKIFIPIPQSGSNGVSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVT 393

Query: 344 ----NAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
               N G    +P    R+A TTV++  G +  + GL+KD+     + IP + ++P+LGA
Sbjct: 394 LSASNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGALKAIPGVGEVPVLGA 453

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           LFR++ F ++ TE+    TP LVKP+   D++ P D +S  ++   F
Sbjct: 454 LFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVF 500


>gi|46580524|ref|YP_011332.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602159|ref|YP_966559.1| type II and III secretion system protein [Desulfovibrio vulgaris
           DP4]
 gi|46449943|gb|AAS96592.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562388|gb|ABM28132.1| type II and III secretion system protein [Desulfovibrio vulgaris
           DP4]
 gi|311234263|gb|ADP87117.1| type II and III secretion system protein [Desulfovibrio vulgaris
           RCH1]
          Length = 484

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/427 (30%), Positives = 209/427 (48%), Gaps = 51/427 (11%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           +++ G + V+    PV    + ++D   A VVV SP+ +Y+ GK  G   + L    G  
Sbjct: 44  QVATGKSSVVSTSRPVG--RLAIADEAIAGVVVLSPQQVYVTGKKAGTTTLTLWDGGGAV 101

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           +   D+ +  DIA L+  L R +   N I V  V+DTV L G VR+      A++++  +
Sbjct: 102 IGVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGVNDTVTLAGTVRSAASMTTAMDMARLY 161

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGS--- 222
                       +  KV NL+ + G  QV L+V +AE+RR++++++G    ++  G    
Sbjct: 162 ------------APDKVTNLMQVGGVHQVMLEVKVAEMRRNVMERLGIDLTYAWRGDFIF 209

Query: 223 ----------------SSGPSKS-FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
                            +GPS +  + +  G F    G  S+ G LD          L++
Sbjct: 210 GMLNQLFTLDSQKGVVDAGPSGAVLSPNVNGAFRITSGQVSIMGFLD---------VLKQ 260

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              ++ LAEPTL   SG+ A F +GG+ +   V    G  ++   ++GV L F PTV+  
Sbjct: 261 NGLVKVLAEPTLVCRSGEKAEFLAGGE-IPIPVPQGLGTVAIEYKEFGVTLQFLPTVVGD 319

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           GRI +++  EVSE     V+ +    +P+   R+A TTVEL  G +  +AGLL+DD++Q 
Sbjct: 320 GRISMKVAPEVSELDYTNVVQIQGFTIPAITSRRASTTVELADGQSFAIAGLLRDDVRQA 379

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
               P+L  +P+LG LFR+S + + ETE+ I  TP L KP+       P D Y      +
Sbjct: 380 VNKYPVLGDMPVLGTLFRSSNWQKNETELVIIVTPHLAKPLEANATRLPTDAYREPSAFE 439

Query: 442 AFFFNRV 448
            F   R+
Sbjct: 440 YFILGRM 446


>gi|107028248|ref|YP_625343.1| type II and III secretion system protein [Burkholderia cenocepacia
           AU 1054]
 gi|116687159|ref|YP_840406.1| type II and III secretion system protein [Burkholderia cenocepacia
           HI2424]
 gi|105897412|gb|ABF80370.1| type II and III secretion system protein [Burkholderia cenocepacia
           AU 1054]
 gi|116652874|gb|ABK13513.1| type II and III secretion system protein [Burkholderia cenocepacia
           HI2424]
          Length = 642

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/407 (31%), Positives = 217/407 (53%), Gaps = 19/407 (4%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ L K +++ +P  V++  + +P  A   + SP+T+Y+ G  VG  N+I+ G  G   
Sbjct: 100 VAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIVQGRSGACR 159

Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +D+ +  D   L+ +L + + +  +I V   + T+VL G V + Q +Q+AV+++  + 
Sbjct: 160 V-IDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQAVQIAHAYG 218

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
             +G +         V+N+LN+    QV L+V +AEV + ++ Q+G   +I G     S 
Sbjct: 219 DSAG-DAAGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQGGFGSWSG 277

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           +  ++     V+ G  F+     +   F     A      ++ LAEP L  ISGQ A+F 
Sbjct: 278 ALVSNLLAG-VASGAVFNKA---NNKPFSIAADAQNTDNLVKILAEPNLVTISGQEATFL 333

Query: 289 SGGQHLYK-TVSSSTGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGV- 343
           +GG+       S S G +S+T  +  +GV L FTPTVL+ GRI L++  EVSE    GV 
Sbjct: 334 AGGKIFIPIPQSGSNGVSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVT 393

Query: 344 ----NAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
               N G    +P    R+A TTV++  G +  + GL+KD+     + IP + ++P+LGA
Sbjct: 394 LSASNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGALKAIPGVGEVPVLGA 453

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           LFR++ F ++ TE+    TP LVKP+   D++ P D +S  ++   F
Sbjct: 454 LFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVF 500


>gi|16520026|ref|NP_444146.1| outermembrane protein RhcC2; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
 gi|2495099|sp|P55702|Y4XJ_RHISN RecName: Full=Uncharacterized protein y4xJ
 gi|2182718|gb|AAB91933.1| outermembrane protein RhcC2; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
          Length = 423

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/384 (33%), Positives = 193/384 (50%), Gaps = 20/384 (5%)

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           + +P     + V+DPT AD    S RT+++FGK  G+ ++  +  +G+ +  L +++ + 
Sbjct: 23  VHLPAPAATIFVADPTIADYQAPSNRTIFVFGKKFGRTSLFALDENGEALAELHVVVTQP 82

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           IA L   LR  + D  I V       +L G     +    A  ++E FL           
Sbjct: 83  IADLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAEVVDIAKRVTEQFLGDGA------- 135

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---G 236
               ++N + +AG  QV L V +AEV R  LK +G   S  G   G  K    + G   G
Sbjct: 136 ---PIVNNIKVAGSLQVNLSVRVAEVSRSGLKALGINLSAFGQF-GNFKVGVLNRGAGLG 191

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                GG   +    D  S   VL AL +      LAEP LTA+SG++ASF +GG+    
Sbjct: 192 SATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLAEPNLTAMSGETASFLAGGEFPIP 251

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352
            +  + G TSV    +GV L F PTVL    I + ++ EVSE      + VN   +P+  
Sbjct: 252 VLQEN-GQTSVEFRRFGVSLEFVPTVLDNNLINIHVKPEVSELSLQGAVQVNGIAVPAVS 310

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+ADT VEL SG + V+ GL++ ++       P L +IPILGALFR+S F +EE+E+ I
Sbjct: 311 TRRADTVVELASGQSFVIGGLIRRNVNNDISAFPWLGRIPILGALFRSSSFQKEESELVI 370

Query: 413 AATPFLVKPVAMRD-LSRPDDHYS 435
             TP++V+P +  + +S P D  +
Sbjct: 371 LVTPYIVRPGSNPNQMSAPTDRMA 394


>gi|167841781|ref|ZP_02468465.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 433

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + + +L   ++++ 
Sbjct: 20  MVKLPEPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 79

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L       ++ +     ++++ G V +  D+    +  + +L Q        
Sbjct: 80  DTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVAQTLKPYLRQQ------- 132

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S          F G+ 
Sbjct: 133 ---ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 186

Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +          S  G FSV G     R+S + VL AL++   I  LAEP LTAISGQ+AS
Sbjct: 187 LFDTASKAFDLSPSGAFSVLGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 246

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
           F +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVSE  P   V 
Sbjct: 247 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 306

Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+LG LF +  
Sbjct: 307 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 366

Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430
           +  ++TE+ +  TP++V+P        A+ D++RP
Sbjct: 367 YLNDKTEVVVIVTPYIVQPANPGELHDALDDVTRP 401


>gi|330985203|gb|EGH83306.1| type III secretion component [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 429

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/410 (32%), Positives = 207/410 (50%), Gaps = 24/410 (5%)

Query: 44  IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           I KG K    ++IG  +V+    P+D   V+V++P  AD+ V SP  +Y+FGK  GQ ++
Sbjct: 20  IAKGAKGTVDLAIGEGRVLHFSAPLD--SVMVAEPGIADLQVVSPGVIYVFGKAAGQTSL 77

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I +  +G++   L + +    A +   L+     S  R+      V+  G   ++QD   
Sbjct: 78  IALDSEGRETAALSLAVSSSTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 134

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A +L+   LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   + 
Sbjct: 135 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNA 187

Query: 220 ---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
               G+ S    +  A             S        + + +L AL+    +  LAEP 
Sbjct: 188 LFNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPN 247

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           +TA++GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ EV
Sbjct: 248 ITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEV 306

Query: 337 SE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           S       + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +P
Sbjct: 307 SSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMP 366

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           ILG LFR+ RF R ETE+ I  TP+LV+PV  R ++ P D       A A
Sbjct: 367 ILGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 416


>gi|126737254|ref|ZP_01752989.1| bacterial type II/III secretion system protein [Roseobacter sp.
           SK209-2-6]
 gi|126721839|gb|EBA18542.1| bacterial type II/III secretion system protein [Roseobacter sp.
           SK209-2-6]
          Length = 446

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 233/462 (50%), Gaps = 35/462 (7%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
           LP  + A A  + +  V+ G    + + +N+ I+++      ++ +++P  AD+   S R
Sbjct: 3   LPVAEPAQANGLRV--VKQGTSITLDVPMNRAIVVESDAPFAELSIANPNIADISSLSDR 60

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
           T+Y+ GK+ G   + L+   GK + N+++ +  D++  +  LR+ +    I V   +D +
Sbjct: 61  TIYVLGKSPGLTTLTLLDGAGKLITNVNVRVAADVSEFKERLRQILPGEKIEVRTANDGI 120

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           VL G V +    QRA++L+E +            + ++V NL+++ G  QV LKV  AE+
Sbjct: 121 VLSGTVSSSARLQRALDLAERY------------APERVSNLMSVGGVQQVMLKVRFAEM 168

Query: 206 RRDILK----QIGFQHSITGSSSGPSKSFAADFGGKF----VSEGGDFSVKGVLDRFSFE 257
            R + K     + F +S  G   G + ++     G      V++G + +V       SF 
Sbjct: 169 ERSVSKTLSSSLAFGNS--GDVIGETGTWLDGNNGLGNPVQVTQGTEGAVAISFGAGSFR 226

Query: 258 --TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
              +L ALE+   +RTLAEP L+A+SGQ ASF +GG++    V +      +    +G+ 
Sbjct: 227 VGVLLEALEQKGIVRTLAEPNLSALSGQEASFLAGGEYPIPVVDAD--GIGIEYKPFGIE 284

Query: 316 LHFTPTVLSPGRIGLRIQTEVS--EPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLA 371
           L F P V+    I L ++  VS  +P   V  N   +  +  R   TTVEL  G +  +A
Sbjct: 285 LDFIPRVVDQDVINLELEAVVSAIDPTTTVVQNGLTINGFTRRATSTTVELRDGESFAIA 344

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL++D+       +P +  IPI+GALFR++ + RE+TE+ I  +  LV P     L+ P 
Sbjct: 345 GLVQDEFTDSNGQVPWVGDIPIIGALFRSASYQREQTELVIIVSAHLVTPTRGEALTLPT 404

Query: 432 DHYSVEDDAKAFFFNRV-NKIYGPKEASEVEGQNYKGAIGFI 472
           D      + + F F R  +   GP   +EV GQ+Y G+ G++
Sbjct: 405 DRVKPPSENELFLFGRTEHNRSGP--VNEVAGQDYNGSYGYV 444


>gi|85705151|ref|ZP_01036251.1| bacterial type II/III secretion system protein [Roseovarius sp.
           217]
 gi|85670473|gb|EAQ25334.1| bacterial type II/III secretion system protein [Roseovarius sp.
           217]
          Length = 428

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/441 (29%), Positives = 215/441 (48%), Gaps = 37/441 (8%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           +N+ ++++      ++ +++P  AD    S RT+Y+ GK  G+  + L    G+ + N+D
Sbjct: 1   MNRAVVVESDSPFAELSIANPAIADFSTLSDRTIYVLGKTPGRTTLSLFDGAGQLITNID 60

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           + +  DI   +  L++ +    I V   +D +V+ G V +    QRA++L+E +      
Sbjct: 61  VHVSTDIEEFKERLKQILPGEPIEVRSANDGIVISGTVSSSSRMQRALDLAERY------ 114

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
                 + ++V NL++++G+ QV LKV  AE++R + K +    SI    +     F   
Sbjct: 115 ------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKALSTSLSIDARGANQVGVFGGT 168

Query: 234 -----FGGKFVSEGGDFSVKGVLDR-----FSFET-------VLHALERATAIRTLAEPT 276
                 GG   S  G  ++ G  D      F F+        +L ALE    +RTLAEP 
Sbjct: 169 NTTNTLGGVLGSTAG--TIPGANDNNGVFNFGFDVGSVEVGILLEALETKGVVRTLAEPN 226

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           LTA+SGQ A F +GG+     V+     T+V    +GV L+F P V+  G I L +   V
Sbjct: 227 LTALSGQEAKFLAGGEFPVP-VAQDNDTTTVEFKPFGVELNFVPRVVDDGIINLEMAAAV 285

Query: 337 SE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           S       +  +   +P++R R   TTV L  G +  +AGLL+DD +     +P L  +P
Sbjct: 286 SSIDTSNSLVSDGFSIPAFRRRDTSTTVALRDGESFAIAGLLQDDFRDNAGQVPWLGDVP 345

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV-NKI 451
           +LGALFR++ + R +TE+ I  +  LV P     L+ P D   +  +   F   RV N +
Sbjct: 346 VLGALFRSADYQRSQTELVIIVSAHLVSPSRGEALALPTDRVKLPSEKDLFLNGRVANGV 405

Query: 452 YGPKEASEVEGQNYKGAIGFI 472
                  EV  Q++ G+ G++
Sbjct: 406 SDRGAVGEVAKQDFTGSYGYV 426


>gi|91788411|ref|YP_549363.1| type II and III secretion system protein [Polaromonas sp. JS666]
 gi|91697636|gb|ABE44465.1| type II and III secretion system protein [Polaromonas sp. JS666]
          Length = 514

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 146/488 (29%), Positives = 247/488 (50%), Gaps = 42/488 (8%)

Query: 16  LFSSNPSVAKLPPIKEANAA----VINISDVEI-GK---GKKISIGLNKVIILQVPVDVQ 67
           L + NP  A   P K+A  A    V+  +   I GK     +I++   K  ++++P    
Sbjct: 40  LAAKNPPTATSGPGKQAATAQPKAVVTQARAPITGKVELAPQINLSEGKSTLMRLPSPAT 99

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            + V D    DV++ +P  +Y+ GK+VG  N+IL        + +DI +  D   L   L
Sbjct: 100 RLSVGDARIVDVILLNPSELYMLGKSVGSTNLILWNKANDATI-IDIAVGMDTVALRSRL 158

Query: 128 RR-FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS------ 180
            + F ++ ++++   +DT++L GMV  +  + + + ++  ++ +S R+  A  +      
Sbjct: 159 EQMFASEKDLKITTAADTLILSGMVSDVVKADQILSVANAYVQRSSRSGQAGGASGGSAG 218

Query: 181 -----SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
                S KV+N+L+IA   QV L+V +AEV + +  Q+G   SI G  +  + S+     
Sbjct: 219 GQQSDSAKVVNMLSIAAPQQVMLEVQVAEVSKTLADQLG--ASIGGRKT--TGSWTYTLL 274

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              ++ G   S+  V +  +F T+  A +    ++ LAEPT+ AISGQ ASF +GG+   
Sbjct: 275 SNLLT-GAASSIGAVKNSGNFLTI-DAQKGDGLLKILAEPTIMAISGQEASFLAGGKIFI 332

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----- 347
              S + G  ++   ++GV + F PTVL  GRI L++  EVS+     +G++A       
Sbjct: 333 PVKSGNNGEIALEEKEFGVSVKFLPTVLEGGRINLKVAPEVSDLNRQGVGISATGSSTTA 392

Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +PS+  R+A TTV+L  G +  + GL+K+++       PLL ++P+LGALFR+S F  +
Sbjct: 393 ILPSFTTRRASTTVQLFDGQSFAIGGLIKNNVTANINAFPLLGEVPVLGALFRSSDFQTD 452

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            +E+    TP LVKP+   D   P D Y ++     FF     +   P E ++  G    
Sbjct: 453 RSELVFIVTPHLVKPLPA-DYKLPTDPY-IQPSRSEFFLGGKMEGAAPPEGNKPAGP--- 507

Query: 467 GAIGFIYK 474
            A GF  K
Sbjct: 508 -ATGFEVK 514


>gi|83943939|ref|ZP_00956396.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
           EE-36]
 gi|83954512|ref|ZP_00963223.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83840796|gb|EAP79967.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83845186|gb|EAP83066.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
           EE-36]
          Length = 479

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 230/458 (50%), Gaps = 44/458 (9%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V+ G  + + + +N+ ++++  +   ++ +++P  AD+   S RT+Y+ GK+ G   + L
Sbjct: 37  VKKGTNRVLEVPMNRAVVVESDIPFAELSIANPGIADISSLSDRTIYVLGKSPGLTTLTL 96

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +   G+ + N+D+ +  D++  +  LR+ +    I V   +D +VL G+V + Q  QRA+
Sbjct: 97  LDAAGQLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGIVLSGIVSSTQRLQRAL 156

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +L+E +            + ++V NL+++ G  QV +KV  AE+ R + K +    ++ G
Sbjct: 157 DLAERY------------APERVSNLMSVGGIQQVMMKVRFAEMSRSVSKSLSASLALNG 204

Query: 222 ------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET-------VLHA 262
                       +++  + + A   GG   +   + +   VL  F F         +L A
Sbjct: 205 LVGNDLAINGGTNTTNTAGAIANSLGG--TTPASNSNAGAVL--FGFNAGSTQVGLLLEA 260

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE+  A+R LAEP L A+SGQ A+F +GG++    V+ +    SV    +GV + F P V
Sbjct: 261 LEQKGAVRFLAEPNLVALSGQEATFLAGGEYPVP-VAQTGDQISVQYKPFGVEMSFIPRV 319

Query: 323 LSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           +    I L ++  V     S  V   N  D+ ++  R+  TTVE+  G +  +AGLL DD
Sbjct: 320 VDKDLINLELKAAVSAIDASNSVSLGNGFDISAFTRRETSTTVEMRDGESFAIAGLLTDD 379

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                  +P +  +P+LGALFR++ + R ++E+ I  T  LV P     L+ P D     
Sbjct: 380 FTDNSSQLPWIGDVPVLGALFRSANYQRSQSELVIIITAHLVTPTRGEALALPTDRIKPP 439

Query: 438 DDAKAFFFNRVNK-IYGPKE--ASEVEGQNYKGAIGFI 472
            +++ F   R +K    P +  A EV  Q++ G+ G++
Sbjct: 440 TESELFLSGRTSKGSTAPTKGAAGEVAKQDFSGSYGYV 477


>gi|257141104|ref|ZP_05589366.1| type II and III secretion system protein [Burkholderia
           thailandensis E264]
          Length = 826

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 219/421 (52%), Gaps = 31/421 (7%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           +G+   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ G
Sbjct: 96  MGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQG 155

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV 
Sbjct: 156 KSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVA 214

Query: 163 LSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           +++ +  ++               V+N+L +    QV L+V +AEV + ++ Q+G   ++
Sbjct: 215 IAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNL 274

Query: 220 TGSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            G     + +           G  VS+     + G +D         A      ++ LAE
Sbjct: 275 QGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSID---------AQNTDQPVKILAE 325

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLR 331
           P L  ISGQ A+F +GG+       SS   TS  T    ++GV L FTPTVLS GRI L+
Sbjct: 326 PRLVTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLK 385

Query: 332 IQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +  EVSE       +   N G    +P    R+A TTV++  G T  + GL+KD+ Q   
Sbjct: 386 VAPEVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTL 445

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           + +P + ++P+LGALFR++ F ++ TE+    TP LVKP+A  D+  P D ++  ++A  
Sbjct: 446 KALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADV 505

Query: 443 F 443
           +
Sbjct: 506 Y 506


>gi|94309592|ref|YP_582802.1| type II and III secretion system protein [Cupriavidus metallidurans
           CH34]
 gi|93353444|gb|ABF07533.1| Flp pilus assembly protein secretin CpaC [Cupriavidus metallidurans
           CH34]
          Length = 620

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/419 (30%), Positives = 225/419 (53%), Gaps = 34/419 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + IG +++I L  P  V++  + +P      + SP+T+Y+ G++VG  N+I+ G  G   
Sbjct: 94  VPIGKSQLIPL--PEPVRNRTLGNPNVVQATMVSPQTLYVLGRSVGTTNMIVQGRSGGCS 151

Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +++++  D   L+ +L + +  +S IRV   +D +VL G V + Q + +A+++++ + 
Sbjct: 152 I-INVVVNADSNGLQTSLAQLLPGESGIRVMTAADNLVLTGSVSSSQAALQAMDIAQAY- 209

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
           + + +   AN     V+N++++    QV L+V +AEV + +L Q+G   +I G       
Sbjct: 210 ANAAQGDGANGKKGGVLNMMSVDTPQQVMLEVKVAEVSKTLLNQLGSAVNIQGG------ 263

Query: 229 SFAADFGGKFV-----SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
            F +  GG        +  G F  K   +   F   + A +  + ++ LAEP L  ISGQ
Sbjct: 264 -FGSWTGGVISNLLTGAAAGIFGSKA--NNKPFNLAIDAQKNDSLVKVLAEPNLVTISGQ 320

Query: 284 SASFTSGGQHLYKTVSSST---GATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            ASF +GG+ +Y  V+ S    GA+++T  +  +GV L FTPTVL+ GRI L++  EVSE
Sbjct: 321 EASFLAGGK-IYIPVAQSNALGGASTITLQEEEFGVGLKFTPTVLANGRIHLKVSPEVSE 379

Query: 339 --PVIGVNAGD-------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
             P     +G        +P    R+A TTV++  G +  + GLL+D  +   + +P   
Sbjct: 380 LSPTGATVSGSTLTGQTILPLITTRRASTTVQMRDGESFAIGGLLQDSARGSLKALPGAG 439

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
           ++P+LG LFR+++F ++ TE+    TP LVKP+  ++   P D ++  D    +F   +
Sbjct: 440 EVPVLGTLFRSTQFQQDLTELVFIITPHLVKPMQTQNYPLPTDGFTTPDPLSLYFMGNM 498


>gi|149200847|ref|ZP_01877822.1| bacterial type II/III secretion system protein [Roseovarius sp.
           TM1035]
 gi|149145180|gb|EDM33206.1| bacterial type II/III secretion system protein [Roseovarius sp.
           TM1035]
          Length = 472

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 217/452 (48%), Gaps = 35/452 (7%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V  G    +S+ +N+ ++++      ++ +++P  AD    S RT+Y+ GK  G+  + L
Sbjct: 33  VRNGTSSALSVAMNRAVVVESDSPFAELSIANPAIADFSTLSERTIYVLGKTPGRTTLSL 92

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
               GK + N+D+ +  DI   +  L++ +    I V   +D +V+ G V +    QRA+
Sbjct: 93  FDGLGKLITNIDVHVSTDIEEFKERLKQILPGEPIEVRSANDGIVISGTVSSTSRMQRAL 152

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-- 219
           +L+E +            + ++V NL++++G+ QV LKV  AE++R + K +    SI  
Sbjct: 153 DLAERY------------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKALSSSLSIDA 200

Query: 220 --------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
                         T +  G   + A    G   +    F+    +       +L ALE 
Sbjct: 201 RGANSVGVIGGTNTTNTQGGVLGTLAGAIPGTNENNAA-FAFGFDVGSVEVGILLEALET 259

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              +RTLAEP LTA+SGQ A F +GG+     V+     TS+    +GV L+F P V+  
Sbjct: 260 KGVVRTLAEPNLTALSGQEAKFLAGGEFPVP-VAQDNDTTSIEFKPFGVELNFVPRVVDD 318

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           G I L +   VS       +  N   +P++R R   TTV L  G +  +AGLL+DD +  
Sbjct: 319 GIINLEMAAAVSSIDTANSLVSNGFAIPAFRRRDTSTTVALRDGESFAIAGLLQDDFRDN 378

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P L  +P+LGALFR++ + R +TE+ I  +  LV P     L+ P D   +  +  
Sbjct: 379 AGQVPWLGDVPVLGALFRSADYQRSQTELVIIVSAHLVSPSRGEALALPTDRVKLPSEKD 438

Query: 442 AFFFNRVNKIYGPK-EASEVEGQNYKGAIGFI 472
            F   RV +    K    EV  Q++ G+ G++
Sbjct: 439 LFLNGRVARGVSDKGPVGEVAKQDFTGSYGYV 470


>gi|260431084|ref|ZP_05785055.1| bacterial type II/III secretion system protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414912|gb|EEX08171.1| bacterial type II/III secretion system protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 452

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 132/461 (28%), Positives = 214/461 (46%), Gaps = 49/461 (10%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           N+  V+ G  + + + +N+ I+++      ++ +++   AD+   S RT+Y+ GK  G  
Sbjct: 13  NLRVVKKGTAETLDVPMNRAIVVESETPFAELSIANAGIADISSLSDRTIYVLGKAPGLT 72

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
            + L    G  + N+ + +  D+   +  LR+ + +  I V   +D +VL G V +    
Sbjct: 73  TLTLFDGAGNLIANVRVRVAPDVTEFKERLRQILPNERIEVRTANDGIVLSGTVSSSAKL 132

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
            RA+EL+E +            + ++V NL+N+ G  QV LKV  AE+ R + K +    
Sbjct: 133 ARALELAERY------------APERVSNLMNVGGVQQVMLKVRFAEMNRSVAKSLSASL 180

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR-------------FSF-------E 257
              GS          D  G   S    FS+   L               F F        
Sbjct: 181 GFGGS----------DVTGGINSLNNSFSLSNALGNNIPVSQSNTGAILFGFGAGSTQVR 230

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
            +L ALE     R+LAEP L+A+SGQ A+F +GG+ +   V    G  ++    +GV + 
Sbjct: 231 LLLEALEAKGLARSLAEPNLSALSGQEATFLAGGE-VPIPVPQDDGVVAIEYKSFGVEID 289

Query: 318 FTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           F P V+    I L +   VS         +N   +PS+  R+  TTVEL  G +  +AGL
Sbjct: 290 FIPRVVDGDLINLEMAASVSAIDTSSDFTINGDSVPSFVTRQTSTTVELRDGESFAIAGL 349

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           ++DD   L   IP L  +P+LGALFR++ + RE++E+ I  T  LV P     L+ P D 
Sbjct: 350 IQDDFTDLSNQIPWLGDVPVLGALFRSAEYQREQSELVIIITAHLVSPTRGEALALPTDR 409

Query: 434 YSVEDDAKAFFFNRVNKI--YGPKEASEVEGQNYKGAIGFI 472
                +   F   RV++    G   ASEV  Q++  + G++
Sbjct: 410 VKPPSEFDLFLNGRVSRTERAGNGAASEVANQDFGSSYGYV 450


>gi|167620125|ref|ZP_02388756.1| type II/III secretion system protein [Burkholderia thailandensis
           Bt4]
          Length = 427

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 205/395 (51%), Gaps = 36/395 (9%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + + +L   +++  
Sbjct: 14  MVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANDRTILRETVVVNV 73

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L       ++ +     ++++ G V +  D+   V+  + +L Q        
Sbjct: 74  DTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 126

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S          F G+ 
Sbjct: 127 ---ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 180

Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +          S  G FSV G      +S + VL AL++   I  LAEP LTAISGQ+AS
Sbjct: 181 LFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 240

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
           F +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVSE  P   V 
Sbjct: 241 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 300

Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+LG LF +  
Sbjct: 301 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 360

Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430
           +  ++TE+ +  TP++V+P        A+ D++RP
Sbjct: 361 YLNDKTEVVVIVTPYIVQPANPGELRDALDDITRP 395


>gi|83719085|ref|YP_442980.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|257139204|ref|ZP_05587466.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|83652910|gb|ABC36973.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 492

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 205/395 (51%), Gaps = 36/395 (9%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + + +L   +++  
Sbjct: 79  MVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANDRTILRETVVVNV 138

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L       ++ +     ++++ G V +  D+   V+  + +L Q        
Sbjct: 139 DTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 191

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S          F G+ 
Sbjct: 192 ---ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 245

Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +          S  G FSV G      +S + VL AL++   I  LAEP LTAISGQ+AS
Sbjct: 246 LFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 305

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
           F +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVSE  P   V 
Sbjct: 306 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 365

Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+LG LF +  
Sbjct: 366 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 425

Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430
           +  ++TE+ +  TP++V+P        A+ D++RP
Sbjct: 426 YLNDKTEVVVIVTPYIVQPANPGELRDALDDITRP 460


>gi|167841773|ref|ZP_02468457.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 484

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 132/422 (31%), Positives = 223/422 (52%), Gaps = 26/422 (6%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 16  EMRESTNVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 75

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 76  GKSGACQI-IDVAVGADADGLQTSLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 134

Query: 162 ELSETFLSQSGRNQYAN--------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            +++ +  ++      N        SS   V+N+L +    QV L+V +AEV + ++ Q+
Sbjct: 135 AIAKAYSDRTNAGAAGNGNGNGGGGSSRADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM 194

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G   +I G       S+        ++  G   V    ++      + A +    ++ LA
Sbjct: 195 GSAVNIQGGFG----SWTGALMTSLLTGVGSGIVASKSNKLPLSGAIDAQDTDQPVKILA 250

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGL 330
           EP L  ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L
Sbjct: 251 EPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISL 310

Query: 331 RIQTEVSE-PVIGV-----NAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           ++  EVSE    GV     N G+   +P    R+A TTV++  G T  + GL+KD+ Q  
Sbjct: 311 KVAPEVSELSPTGVTLSASNVGNVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGT 370

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
            + +P + ++P+LGALFR++ F ++ TE+    TP LVKP+   D+  P D ++  ++A 
Sbjct: 371 LKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLDTADVPLPTDSFTKPNEAD 430

Query: 442 AF 443
            +
Sbjct: 431 VY 432


>gi|167581961|ref|ZP_02374835.1| type II/III secretion system protein [Burkholderia thailandensis
           TXDOH]
          Length = 441

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 205/395 (51%), Gaps = 36/395 (9%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + + +L   +++  
Sbjct: 28  MVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANDRTILRETVVVNV 87

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L       ++ +     ++++ G V +  D+   V+  + +L Q        
Sbjct: 88  DTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 140

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S          F G+ 
Sbjct: 141 ---ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 194

Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +          S  G FSV G      +S + VL AL++   I  LAEP LTAISGQ+AS
Sbjct: 195 LFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 254

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
           F +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVSE  P   V 
Sbjct: 255 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 314

Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+LG LF +  
Sbjct: 315 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 374

Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430
           +  ++TE+ +  TP++V+P        A+ D++RP
Sbjct: 375 YLNDKTEVVVIVTPYIVQPANPGELRDALDDITRP 409


>gi|82703477|ref|YP_413043.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
 gi|82411542|gb|ABB75651.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
          Length = 574

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 135/437 (30%), Positives = 222/437 (50%), Gaps = 57/437 (13%)

Query: 55  NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQML 110
            K  +L++P  V  + V +P  ADV + SP  +Y+ GK++G  NVIL    G     Q  
Sbjct: 95  GKSALLRLPAPVTRISVGNPDVADVTLISPGEIYVLGKSIGTTNVILWTRGGLAGSSQTA 154

Query: 111 NLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            +++ +  D A L+  LR  +  +++I+V    D++VL G V     + RAV L++ ++ 
Sbjct: 155 VINVTVILDAAALQAKLRELMPGETDIKVTAAGDSLVLSGTVSDTLKADRAVALADAYVR 214

Query: 170 QSG-------------------------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
            +                          +       S +V+NLL +    QV L+V +AE
Sbjct: 215 AAAGGQGGQRGGKQGGDASGGQGGGDEPKGAGQGLGSVQVVNLLQVGSNQQVMLEVKVAE 274

Query: 205 VRRDILKQIGF--QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---VLDRFSFETV 259
           + R + +++GF  Q +   + S  ++      GG   + G  F  +G   + D F    +
Sbjct: 275 INRKVAERLGFDFQRAARKAGSAWTQIMTGIIGG---APGMLFQSRGTPEIGDAF----L 327

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + A ++      LAEP + AISGQ ASF  GG+ +   +    G  ++ +  +GV L FT
Sbjct: 328 IDAEKKDELFHILAEPNIVAISGQEASFLVGGEVMIP-IPQYAGVITLQSRQFGVGLRFT 386

Query: 320 PTVLSPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIV 369
           PTVL  GRI L +  EV+E V           GV A  +P++  R+  TTV+L  G ++ 
Sbjct: 387 PTVLEEGRINLVVSPEVTELVKFDTIATTGLGGVLA--VPTFTTRRVSTTVQLRDGQSLA 444

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + GLL+D+I++  +  P+L +IPILGALFR+S F +++TE+ +  TP L+KP+   D + 
Sbjct: 445 IGGLLQDNIKETIKRFPVLGEIPILGALFRSSDFQKDKTELMVVVTPRLIKPL-QPDYAL 503

Query: 430 PDDHYSVEDDAKAFFFN 446
           P D + V+ D   F F+
Sbjct: 504 PTDAF-VQPDRPDFLFD 519


>gi|162147491|ref|YP_001601952.1| type II and III secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545598|ref|YP_002277827.1| type II and III secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786068|emb|CAP55650.1| type II and III secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533275|gb|ACI53212.1| type II and III secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 473

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 128/404 (31%), Positives = 207/404 (51%), Gaps = 33/404 (8%)

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           ++ V+DP   +V   SP +M++FG   GQ  VI     G  +    +++    ++    L
Sbjct: 62  NIFVADPKVVEVRAASPDSMFVFGVGAGQTTVIATSRSGGVVARYTVVVLPS-SYRASAL 120

Query: 128 RRFIADSNIRVEM---VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
           RR +   N RV +      ++ + G   + + +++A+E +   + + GR          V
Sbjct: 121 RRDVGQQNPRVRIGTGADGSIGIEGTETSSESAEQALEGATALVGKGGR----------V 170

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
            +  ++ G  QV LKV I E+ R +++++G +     ++ G + +          +   +
Sbjct: 171 GDYASVPGSIQVNLKVRIVEMSRSLVRELGVEWQSV-NALGTAAAIGISTSNPLAALTTE 229

Query: 245 FSVKGVLDRFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            S    L RFS        ETV+ AL +   I +LAEP LT +SGQ+ASF  GG++    
Sbjct: 230 QSAFNFLSRFSAAGRPVTVETVIDALSQDGLIHSLAEPNLTTVSGQAASFIVGGEYPIP- 288

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGD----MP 349
           VSS     +V    YG+ L F PTVL+ GRI L ++ EVS    +  + ++  +    +P
Sbjct: 289 VSSYNNNINVQYKQYGISLAFVPTVLADGRISLHVRPEVSALSTQGAVTLSEANGNLQIP 348

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +  VR+ADTTVEL SG +  +AGL++D       G+P L  IP+LGALF++S F + E+E
Sbjct: 349 ALTVRRADTTVELGSGQSFAIAGLMQDSTNMQGLGLPFLGDIPVLGALFKSSSFQKNESE 408

Query: 410 IFIAATPFLVKPVAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIY 452
           + I  TP+LV+PV     L  PDD+++   D    F  R N IY
Sbjct: 409 LVIVVTPYLVRPVDNESMLHSPDDNWAPPGDLDRIFLMRQN-IY 451


>gi|194288836|ref|YP_002004743.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193222671|emb|CAQ68674.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 621

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/418 (30%), Positives = 226/418 (54%), Gaps = 33/418 (7%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + +G +++I LQ PV  ++  + +P+     + SP+T+Y+ G+ VG  N+I+ G  G   
Sbjct: 95  VPVGKSQLITLQEPV--RNRTLGNPSVVQATMVSPQTLYVLGRTVGTTNMIVQGRSGSCS 152

Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +++++  D   L+ +L + +  +  IRV   +D +VL G V   Q +Q+A+E+++ + 
Sbjct: 153 I-INVVVNADSGGLQTSLGQLLPGEPGIRVTTAADNLVLTGSVTNAQAAQQAMEIAQAYA 211

Query: 169 SQSGRNQYANSSSK-KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
           + +   Q  + + K  V+N++++    QV L+V +AEV + +L Q+G   ++ G      
Sbjct: 212 NAA---QGGDGNKKGSVLNMMSVDTPQQVMLEVKVAEVSKTLLNQLGSAVNLQG------ 262

Query: 228 KSFAADFGGKFVS--EGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
             F +  GG   S   G   +V G   +   FE  L A +  + ++ LAEP L  ISGQ 
Sbjct: 263 -GFGSWSGGLVTSLLTGASAAVFGSKANNRPFEFALDAQKNDSLVKILAEPNLVTISGQE 321

Query: 285 ASFTSGGQHLYKTVSSS---TGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
           ASF +GG+ +Y  V+ +    GA +VT    ++GV L FTPTVL+ GRI L++  EVSE 
Sbjct: 322 ASFLAGGK-IYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANGRIHLKVAPEVSEL 380

Query: 339 -PV-----IGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            P       G  AG   +P    R+A TTV++  G +  + GLL D  +   + +P   +
Sbjct: 381 SPTGATIRGGTLAGQTILPVITTRRASTTVQMRDGESFAIGGLLTDSARGSLKALPGAGE 440

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
           +P+LG LFR++++ ++ +E+    TP LVKP+   +   P D +S  +    +F   +
Sbjct: 441 VPVLGTLFRSTQYQQDLSELVFIITPRLVKPMQTNNYPLPTDSFSAPNPLSLYFMGNM 498


>gi|187927687|ref|YP_001898174.1| type II and III secretion system protein [Ralstonia pickettii 12J]
 gi|187724577|gb|ACD25742.1| type II and III secretion system protein [Ralstonia pickettii 12J]
          Length = 663

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/462 (29%), Positives = 234/462 (50%), Gaps = 47/462 (10%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
              S NP++A  P    A+    N +    G+   + + + K  ++ +P  V++  + +P
Sbjct: 75  MTISMNPALATAP---VADVRGPNCTGAVRGE-SSVVVPVGKSSLISLPEPVRNRTLGNP 130

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 + SP++MYL G++VG  N+I+ G  G   + +++++  D   L+ +L + +   
Sbjct: 131 AVVQATMVSPQSMYLLGRSVGTTNMIVQGRSGACSI-VNVVVNADAGGLQTSLAQLMPGE 189

Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------------GRNQYANSSS 181
           N IRV   +D++VL G V + Q +Q+A+E++  + + +                   +  
Sbjct: 190 NKIRVMTAADSLVLAGNVSSAQAAQQAMEIAHAYAASAQSGADKGGGAAGALGGGGAAGG 249

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
             V+N++ +    QV L+V +AEV + +L Q+G   ++ G        F +  GG   S 
Sbjct: 250 ANVINMMIVDTPQQVMLEVKVAEVSKTLLNQLGSALNVQGG-------FGSWSGGLLTSL 302

Query: 241 ----EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                 G F+ K   +   F+  L A +  + ++ LAEP L  +SGQ ASF +GG+ +Y 
Sbjct: 303 LTGSSTGFFANKA--NNRPFQVELDAQKNDSLVKILAEPNLVTLSGQEASFLAGGK-IYI 359

Query: 297 TV---SSSTGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNA 345
            V   SSS GA ++T  +  YGV L FTPTV++ GRI L++  EVSE       V G N 
Sbjct: 360 PVAQSSSSGGAPTITLQEEEYGVGLKFTPTVMANGRINLKVAPEVSELSPTGATVTGANT 419

Query: 346 GD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                +P    R+A TTV++  G +  + GLL+D+ +   + +P   +IP+LG LFR+++
Sbjct: 420 NGQTILPLITTRRASTTVQMRDGESFAIGGLLQDNARGSLKALPGAGEIPVLGTLFRSTQ 479

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           F  + TE+ I  TP LV+P+       P D +S  ++   + 
Sbjct: 480 FQHDLTELVIVITPRLVQPMQTASYPLPTDSFSTPNELAVYL 521


>gi|171320618|ref|ZP_02909638.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
 gi|171094131|gb|EDT39218.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
          Length = 460

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 139/453 (30%), Positives = 224/453 (49%), Gaps = 57/453 (12%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +SI   K  +L +      + V+DP+ AD+ V SPRT+++FGK  G   +I +G + + +
Sbjct: 36  LSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPI 95

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           L   ++++ D A L+  L        + V     ++++ G V +  D+   ++    +L+
Sbjct: 96  LRRTVIVQVDTASLQTVLDSRFPQLKLSVSGAPGSLMVSGKVPSAADADAVMQSLTPYLN 155

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                       +K++N L ++   QV L+V + EV R++ +Q+G    I  SS G + +
Sbjct: 156 DK----------EKIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLG----INWSSLGAAGN 201

Query: 230 FAADFGGKF--------------VSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLA 273
           F    GG F              +S  G +SV G     R+S + VL AL++   I  LA
Sbjct: 202 F---IGGLFNGRTLMDPTTKLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLITMLA 258

Query: 274 EPTLTAISGQSASFTSGGQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           EP LTA+SGQ+ASF +GG+         S+TGA +V    +GV L FTPTVL+  RI L+
Sbjct: 259 EPNLTAMSGQTASFLAGGEIPIPVAQAGSTTGAITVEFKPFGVSLDFTPTVLADNRISLK 318

Query: 332 IQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           ++ EVSE    V+A +        +P   VR+ +TTVEL SG +  + GLL+        
Sbjct: 319 VRPEVSE----VDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTADTVS 374

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            IP L ++PI+G LF +  F   +TE+ +  TP++V+P     L +  D  +       F
Sbjct: 375 QIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSDLEF 434

Query: 444 FFNR---VNKIYGPKEASEVEGQNYKGAIGFIY 473
              R   ++ + G       E     GA GF+Y
Sbjct: 435 AVQRNLGLDLLSG-------ETPRLVGAAGFVY 460


>gi|167851182|ref|ZP_02476690.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei B7210]
          Length = 449

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K ++L +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 15  EMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 74

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 75  GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 133

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 134 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 193

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 194 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 249

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 250 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 309

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 310 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 369

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 370 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 425


>gi|170703887|ref|ZP_02894570.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
 gi|170131202|gb|EDS99846.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
          Length = 460

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 225/456 (49%), Gaps = 57/456 (12%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +SI   K  +L +      + V+DP+ AD+ V SPRT+++FGK  G   +I +G + 
Sbjct: 33  GAPLSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANH 92

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +L   ++++ D A L+  L        + V     ++++ G V +  D+   ++    
Sbjct: 93  RPILRRTVIVQVDTASLQTVLDSRFPQLKLAVSGAPGSLMVSGKVPSAADADAVMQSLTP 152

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +L+            ++++N L ++   QV L+V + EV R++ +Q+G    I  SS G 
Sbjct: 153 YLNDK----------ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLG----INWSSLGA 198

Query: 227 SKSFAADFGGKF--------------VSEGGDFSVKGVL--DRFSFETVLHALERATAIR 270
           + +F    GG F              +S  G +SV G     R+S + VL AL++   I 
Sbjct: 199 AGNF---IGGLFNGRTLMDPTTRLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLIT 255

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSS--STGATSVTTHDYGVVLHFTPTVLSPGRI 328
            LAEP LTA+SGQ+ASF +GG+       +  +TGA +V    +GV L FTPTVL+  RI
Sbjct: 256 MLAEPNLTAMSGQTASFLAGGEIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVLADNRI 315

Query: 329 GLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            L+++ EVSE    V+A +        +P   VR+ +TTVEL SG +  + GLL+     
Sbjct: 316 SLKVRPEVSE----VDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTAN 371

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L ++PI+G LF +  F   +TE+ +  TP++V+P     L +  D  +     
Sbjct: 372 TVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSD 431

Query: 441 KAFFFNR---VNKIYGPKEASEVEGQNYKGAIGFIY 473
             F   R   ++ + G       E     GA GF+Y
Sbjct: 432 LEFAVQRNLGLDLMSG-------ETPRPVGAAGFVY 460


>gi|163745846|ref|ZP_02153205.1| bacterial type II/III secretion system protein [Oceanibulbus
           indolifex HEL-45]
 gi|161380591|gb|EDQ05001.1| bacterial type II/III secretion system protein [Oceanibulbus
           indolifex HEL-45]
          Length = 478

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 223/458 (48%), Gaps = 45/458 (9%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V+ G    + + +N+ ++++  +   ++ +++P  AD+   S RT+Y+ GK+ G   + L
Sbjct: 37  VKRGTNSSLDVPMNRAVVVESDIPFAELSIANPGIADISSLSDRTIYVLGKSPGLTTLTL 96

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +   G+ + N+D+ +  D++  +  LR+ +    I V   +D +VL G+V + Q  QRA+
Sbjct: 97  LDAGGQLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGIVLSGIVSSTQRLQRAL 156

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT- 220
           +L+E +            + ++V NL+++ G  QV +KV  AE++R++ K +G   +I  
Sbjct: 157 DLAERY------------APERVSNLMSVGGIQQVMMKVRFAEMQRNVSKSLGSSLAING 204

Query: 221 ----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET-------VLHAL 263
                       S+  S   A+  GG   S   + +   VL  F F         +L AL
Sbjct: 205 AIGGTGINGGTGSTNSSGGVASSLGGTIPSS--NQNAGAVL--FGFNAGSTQVGILLEAL 260

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTV 322
           E    +R LAEP L A+SGQ A F +GG+  Y    + TG T +V    +GV L F P V
Sbjct: 261 EEKGVVRFLAEPNLVALSGQEAKFLAGGE--YPVPVAQTGDTIAVEFKPFGVELAFIPRV 318

Query: 323 LSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           +    I L +   V     S  +   N  ++ ++  R+  TTVE+  G +  +AGLL DD
Sbjct: 319 VDKDIINLEMNAAVSAIDGSNSIALGNGIEISAFTRRETSTTVEMRDGESFAIAGLLTDD 378

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                  +P +  +P+LGALFR++ + R +TE+ I  T  LV P     L  P D     
Sbjct: 379 FTDSTRQLPWIGDVPVLGALFRSADYQRSQTELVIIVTAHLVTPTRSEALVLPTDRIKPP 438

Query: 438 DDAKAFFFNR-VNKIYGPKE--ASEVEGQNYKGAIGFI 472
            +   F   R  +    P    A EV  Q+++G+ G++
Sbjct: 439 SEKDLFLHGRTADGTRTPTRGAAGEVAKQDFRGSYGYV 476


>gi|172062959|ref|YP_001810610.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
 gi|171995476|gb|ACB66394.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
          Length = 460

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 225/456 (49%), Gaps = 57/456 (12%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +SI   K  +L +      + V+DP+ AD+ V SPRT+++FGK  G   +I +G + 
Sbjct: 33  GAPLSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANH 92

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +L   ++++ D A L+  L        + V     ++++ G V +  D+   ++    
Sbjct: 93  RPILRRTVIVQVDTASLQTVLDSRFPQLKLAVSGAPGSLMVSGKVPSAADADAVMQSLTP 152

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +L+            ++++N L ++   QV L+V + EV R++ +Q+G    I  SS G 
Sbjct: 153 YLNDK----------ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLG----INWSSLGA 198

Query: 227 SKSFAADFGGKF--------------VSEGGDFSVKGVL--DRFSFETVLHALERATAIR 270
           + +F    GG F              +S  G +SV G     R+S + VL AL++   I 
Sbjct: 199 AGNF---IGGLFNGRTLMDPTTKLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLIT 255

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSS--STGATSVTTHDYGVVLHFTPTVLSPGRI 328
            LAEP LTA+SGQ+ASF +GG+       +  +TGA +V    +GV L FTPTVL+  RI
Sbjct: 256 MLAEPNLTAMSGQTASFLAGGEIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVLADNRI 315

Query: 329 GLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            L+++ EVSE    V+A +        +P   VR+ +TTVEL SG +  + GLL+     
Sbjct: 316 SLKVRPEVSE----VDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTAN 371

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L ++PI+G LF +  F   +TE+ +  TP++V+P     L +  D  +     
Sbjct: 372 TVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSD 431

Query: 441 KAFFFNR---VNKIYGPKEASEVEGQNYKGAIGFIY 473
             F   R   ++ + G       E     GA GF+Y
Sbjct: 432 LEFAVQRNLGLDLMSG-------ETPRPVGAAGFVY 460


>gi|153834055|ref|ZP_01986722.1| Flp pilus assembly protein [Vibrio harveyi HY01]
 gi|148869610|gb|EDL68600.1| Flp pilus assembly protein [Vibrio harveyi HY01]
          Length = 486

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/422 (31%), Positives = 215/422 (50%), Gaps = 23/422 (5%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           GK +S+  ++   L +    + V + DP   D++V     ++L GK +G  NV +    G
Sbjct: 26  GKVVSVAHHQSTQLMISGKAKKVTLGDPEVLDIIVLRSNELFLVGKKLGTTNVSVWDSRG 85

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +   ++ +  D+  L+  L +F+ D +I V    + VVL G+V T Q+   AV+++ET
Sbjct: 86  RLIEQFNVEVTHDLNTLKSKLYQFLPDESIEVHSAQEKVVLRGLVSTQQNMDTAVKIAET 145

Query: 167 FLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQHSI 219
           F +    ++  + S     V+NLL+I G  QVTL+VT+AEV+R ++++       FQ S 
Sbjct: 146 FAAGEAADEGEDDSKDDSMVINLLSIGGAQQVTLEVTVAEVQRTLVRRFDSNFHFFQKSG 205

Query: 220 TGSSSGPSKSFAADFGGKFVS--EGGDFSVKG-VLDRFSFETVLHALERATAI-RTLAEP 275
             +    +     D  G  ++     DF   G  +D  +  T    + R   + + LAEP
Sbjct: 206 DFTWGATTAGGGIDNIGPILNIPSVDDFGFLGSFIDSNTLFTFALDVARQNGVAKVLAEP 265

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +LTA+SG  A F +GG+     V +  G T +   +YGV L F P +LS  RI L++   
Sbjct: 266 SLTALSGTQAEFVAGGEFPIP-VPNEDGIT-IDYKEYGVQLDFVPYILSDKRINLKMNVN 323

Query: 336 VSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           VSE     V+  N  +      +P    R A TT+EL  G TI +AGLL ++ + + +GI
Sbjct: 324 VSEIANSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLSENARNVADGI 383

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P  S +P+LG LF++  F   ETE+ I  TP L  P+  R ++ P D +   +D + +  
Sbjct: 384 PGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGFVSPNDVEFYLL 443

Query: 446 NR 447
            +
Sbjct: 444 GK 445


>gi|167908129|ref|ZP_02495334.1| type II/III secretion system protein [Burkholderia pseudomallei
           NCTC 13177]
          Length = 460

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K ++L +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 20  EMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 79

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 80  GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 138

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 139 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 198

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 199 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 254

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 255 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 314

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 315 SELSPTGVTLSAANMGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 374

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 375 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 430


>gi|134281876|ref|ZP_01768583.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|134246938|gb|EBA47025.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
          Length = 685

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K ++L +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANMGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505


>gi|187919324|ref|YP_001888355.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
 gi|187717762|gb|ACD18985.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
          Length = 595

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/435 (29%), Positives = 219/435 (50%), Gaps = 47/435 (10%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           ++I + K  ++ V   V+   V +P     ++ SP+T+YL G +VG  N+I+ G  G   
Sbjct: 115 VTIPVGKSTMVDVREPVKSRSVGNPAIVQAMLVSPQTLYLLGSDVGTTNMIVQGRSGSCT 174

Query: 110 LNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +D+ +  D   L+ TL   + + + I+V+  +DT+VL G V     ++R +EL+  F+
Sbjct: 175 I-IDVSVGADPGGLQQTLAALMPEETGIQVKAAADTLVLTGTVSDAVKAERVLELARAFV 233

Query: 169 S------QSGRNQ--------------------YANSSSKKVMNLLNIAGEDQVTLKVTI 202
           +      Q G                          +S ++++N++++A   QV L+V +
Sbjct: 234 ARPTAALQGGAPMGSGPLPVGAAPRAMGMPAPTLGGASGERIINMMHVAAPQQVMLEVKV 293

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
           AEV + ++ Q+G   +I G     S    AD+    +S G         +       + A
Sbjct: 294 AEVSKTLIDQLGVAANINGGIGSWSFGLLADY----LSGGLSALTASKANNSPLRAAIDA 349

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----THDYGVVLHF 318
            +    ++ LAEP L AISGQ ASF +GG+ +Y  V  S GA   T       YGV L F
Sbjct: 350 QKTDQLVKILAEPNLMAISGQEASFLAGGK-VYIPVPQSNGANGTTIVLQEEQYGVGLTF 408

Query: 319 TPTVLSPGRIGLRIQTEVSE---PVIGVNAGD------MPSYRVRKADTTVELPSGGTIV 369
           TPTVL  GRI L++  EVSE     + V+AG+      +P    R+A TT+++  G +  
Sbjct: 409 TPTVLEGGRINLKVSPEVSELSSTGVVVSAGNSNNQTILPLITTRRASTTLQVFDGQSFA 468

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + GLLK +I    +G+P  +++P+LGALFR++ + +++TE+    TP L KP+  +    
Sbjct: 469 IGGLLKSNITGSIKGLPGAAELPVLGALFRSTSYEQDKTELVFVVTPRLAKPLP-QHYPL 527

Query: 430 PDDHYSVEDDAKAFF 444
           P DH+    +A  + 
Sbjct: 528 PTDHFGDASEANVYL 542


>gi|261820214|ref|YP_003258320.1| type II and III secretion system protein [Pectobacterium wasabiae
           WPP163]
 gi|261604227|gb|ACX86713.1| type II and III secretion system protein [Pectobacterium wasabiae
           WPP163]
          Length = 475

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/387 (33%), Positives = 207/387 (53%), Gaps = 29/387 (7%)

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           VLV+DP  A   + SP  ++++ KNVG   +  +  +GK +  + ++ E D+  L   ++
Sbjct: 72  VLVADPNIASFELPSPGNLFVYAKNVGTTTLYAMDENGKVINAIRLVSEHDLKALSERIK 131

Query: 129 RFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR---------NQYAN 178
           R    ++I++E  +   V++ G V T QD++R ++  +T+++ S           +Q   
Sbjct: 132 REFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQTYINASSNGAQGGGGGGDQLPG 191

Query: 179 SS--SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
           SS  S KV+N L I    Q+ ++V + EV R +  ++GF  + + S+   S +  A  G 
Sbjct: 192 SSETSGKVVNQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTG--SGNMTAGSGS 249

Query: 237 K---FVSEGGDFSV---KGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           +   F +  G F+     G L+  R     +L A+ +      LAEP LTA+SG++A+F 
Sbjct: 250 RLNLFNATTGRFANPTDSGFLNFGRSRLGGLLTAMNQQGMATVLAEPNLTAMSGETAAFA 309

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVN 344
           +GG+     V  +  + S+    YGV+L  TPT+LS  RI L I  EVSE      + + 
Sbjct: 310 AGGE--VPIVLITNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQLE 367

Query: 345 AGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            G  +P+  VR+ADTTVEL SG +  LAG+L+    Q   G+P LS IP+ G LF +   
Sbjct: 368 GGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSGIPMFGRLFESEST 427

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRP 430
           N EETE+ I AT ++V+PV   DL  P
Sbjct: 428 NHEETELVIIATAYVVEPVNAGDLQTP 454


>gi|167744175|ref|ZP_02416949.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 14]
          Length = 439

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 7   EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 66

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 67  GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 125

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 126 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 185

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 186 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 241

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 242 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 301

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 302 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 361

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 362 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 417


>gi|115358171|ref|YP_775309.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
 gi|115283459|gb|ABI88975.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
          Length = 460

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 139/461 (30%), Positives = 227/461 (49%), Gaps = 59/461 (12%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           VE G    I+ G  +++ L  P     + V+DP+ AD+ V SPRT+++FGK  G   +I 
Sbjct: 30  VEAGATLSIATGKGEMLSLSEPATA--MFVADPSIADIQVPSPRTVFVFGKKAGTTTLIA 87

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +G + + +L   ++++ D   L+  L        + V     ++++ G V +  D+   +
Sbjct: 88  LGANHRPILRKTVIVQVDTVSLQAVLDSRFPQLKLSVSGAPGSLMVSGKVPSAADADAVM 147

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +    +L+            ++++N L ++   QV L+V + EV R++ +Q+G    I  
Sbjct: 148 QSLAPYLNDK----------ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLG----INW 193

Query: 222 SSSGPSKSFAADFGGKF--------------VSEGGDFSVKGVL--DRFSFETVLHALER 265
           SS G + +F    GG F              +S  G +SV G     R+S + VL AL++
Sbjct: 194 SSLGAAGNF---IGGLFNGRTLMDPTNRLFNLSPTGAYSVLGGFHTGRWSIDVVLDALDQ 250

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--STGATSVTTHDYGVVLHFTPTVL 323
              I  LAEP LTA+SGQ+ASF +GG+       +  +TGA +V    +GV L FTPTVL
Sbjct: 251 EGLITMLAEPNLTAMSGQTASFLAGGEIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVL 310

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLK 375
           +  RI L+++ EVSE    V+A +        +P   VR+ +TTVEL SG +  + GLL+
Sbjct: 311 ADNRISLKVRPEVSE----VDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQ 366

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
                    IP L ++PI+G LF +  F   +TE+ +  TP++V+P     L +  D  +
Sbjct: 367 SQTANTVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVA 426

Query: 436 VEDDAKAFFFNR---VNKIYGPKEASEVEGQNYKGAIGFIY 473
                  F   R   ++ + G       E     GA GF+Y
Sbjct: 427 RPSSDLEFAVQRNLGLDLMSG-------ETPRPVGAAGFVY 460


>gi|113866744|ref|YP_725233.1| flp pilus assembly protein secretin [Ralstonia eutropha H16]
 gi|113525520|emb|CAJ91865.1| flp pilus assembly protein secretin [Ralstonia eutropha H16]
          Length = 618

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 128/420 (30%), Positives = 224/420 (53%), Gaps = 37/420 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + +G +++I LQ PV  ++  + +P      + SP+T+Y+ G+ VG  N+I+ G  G   
Sbjct: 96  VPVGKSQLITLQEPV--RNRTLGNPNVVQATMVSPQTLYVLGRAVGTTNMIVQGRSGSCS 153

Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +++++  D   L+ +L + +  +  IRV   +D +VL G V   Q +Q+A+E+++ + 
Sbjct: 154 I-INVVVNADAGGLQTSLGQLLPGEPGIRVMTAADNLVLTGSVTNAQTAQQAMEIAQAYA 212

Query: 169 SQSGRNQYANSSSKK-VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
           + +   Q  + + K  V+N+L++    QV L+V +AEV + +L Q+G   ++ G      
Sbjct: 213 NAA---QGGDGNKKGGVLNMLSVDTPQQVMLEVKVAEVSKTLLNQLGSTVNLQGG----- 264

Query: 228 KSFAADFGGKFVS-----EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
             F +  GG   S         F+ K   +   F+  + A +  + ++ LAEP L  ISG
Sbjct: 265 --FGSWSGGLVTSLLTGASSAIFASKA--NNRPFDIAIDAQKNDSLVKILAEPNLVTISG 320

Query: 283 QSASFTSGGQHLYKTVSSST---GATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVS 337
           Q ASF +GG+ +Y  V+ +    GA +VT  +  +GV L FTPTVL+ GRI L++  EVS
Sbjct: 321 QEASFLAGGK-IYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANGRIHLKVSPEVS 379

Query: 338 E--PVI-----GVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E  P       G  AG   +P    R+A TTV++  G +  + GLL D  +   + +P  
Sbjct: 380 ELSPTGATIRGGTLAGQSILPVITTRRASTTVQMRDGESFAIGGLLTDSARGSLKALPGA 439

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            ++P+LG LFR++++ ++ TE+    TP LVKP+   +   P D +S  +    +F   +
Sbjct: 440 GEVPVLGTLFRSTQYQQDLTELVFVITPRLVKPMQTSNYPLPTDSFSTPNPLSLYFMGNM 499


>gi|167821374|ref|ZP_02453054.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 91]
          Length = 494

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 64  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 123

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 124 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 182

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 183 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 242

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 243 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 298

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 299 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 358

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 359 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 418

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 419 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 474


>gi|254182583|ref|ZP_04889177.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|184213118|gb|EDU10161.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
          Length = 690

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505


>gi|167829715|ref|ZP_02461186.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 9]
          Length = 510

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 73  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 132

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 133 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 191

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 192 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 251

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 252 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 307

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 308 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 367

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 368 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 427

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 428 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 483


>gi|167899813|ref|ZP_02487214.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 7894]
          Length = 473

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 37  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 96

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 97  GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 155

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 156 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 215

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 216 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 271

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 272 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 331

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 332 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 391

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 392 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 447


>gi|167725247|ref|ZP_02408483.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei DM98]
          Length = 448

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 15  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 74

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 75  GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 133

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 134 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 193

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 194 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 249

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 250 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 309

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 310 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 369

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 370 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 425


>gi|76819084|ref|YP_336469.1| phospholipid-binding domain-containing protein [Burkholderia
           pseudomallei 1710b]
 gi|254264517|ref|ZP_04955382.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
 gi|76583557|gb|ABA53031.1| Putative phospholipid-binding domain family [Burkholderia
           pseudomallei 1710b]
 gi|254215519|gb|EET04904.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
          Length = 690

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505


>gi|126456485|ref|YP_001076989.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|242311194|ref|ZP_04810211.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|126230253|gb|ABN93666.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|242134433|gb|EES20836.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
          Length = 690

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505


>gi|237509564|ref|ZP_04522279.1| type II/III secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|235001769|gb|EEP51193.1| type II/III secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 690

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505


>gi|167916476|ref|ZP_02503567.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 112]
          Length = 452

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 15  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 74

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 75  GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 133

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 134 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 193

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 194 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 249

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 250 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 309

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 310 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 369

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 370 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 425


>gi|134291857|ref|YP_001115626.1| type II and III secretion system protein [Burkholderia
           vietnamiensis G4]
 gi|134135046|gb|ABO59371.1| type II and III secretion system protein [Burkholderia
           vietnamiensis G4]
          Length = 647

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 126/417 (30%), Positives = 219/417 (52%), Gaps = 18/417 (4%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+ G  G   
Sbjct: 100 VSVPLGKSLLVPMPEAVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQGKSGACR 159

Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +D+ +  D   L+ +L + + A+ +I V   + T+VL G V   Q +Q+AV+++  + 
Sbjct: 160 V-IDVAVGADAGGLQASLLQLMPAERDIHVSTAAGTIVLAGTVSNSQAAQQAVQIARAYS 218

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
             +G  +   +    V+N+L++    QV L+V +AEV + ++ Q+G   +I G     S 
Sbjct: 219 DSAGGGEGGTAKGGGVLNMLSVTSPQQVMLEVKVAEVSKTLINQMGSALNIQGGFGSWSG 278

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           +  ++      S     +V    +   F     A      ++ LAEP L  ISGQ A+F 
Sbjct: 279 ALVSNLLAGVASA----AVFNKANNKPFSIAADAQNTDNLVKILAEPNLVTISGQEATFL 334

Query: 289 SGGQHLYKTV-SSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSE------P 339
           +GG+       SS TG +++T    ++GV L FTPTVL+ GRI L++  EVSE       
Sbjct: 335 AGGKIFIPVPQSSGTGVSTITLQQEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVT 394

Query: 340 VIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           +   N G    +P    R+A TTV++  G +  + GL+KD+     + IP + ++P+LGA
Sbjct: 395 LSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGVGEVPVLGA 454

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LFR++ F ++ TE+    TP LVKP+   D   P D +S  ++A  +    +   +G
Sbjct: 455 LFRSTSFQQDRTELIFLITPHLVKPLQSADQPMPTDSFSKPNEADVYATGNMEGRHG 511


>gi|53723207|ref|YP_112192.1| outer membrane protein [Burkholderia pseudomallei K96243]
 gi|52213621|emb|CAH39675.1| putative outer membrane protein [Burkholderia pseudomallei K96243]
          Length = 690

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505


>gi|217424167|ref|ZP_03455666.1| outer membrane protein [Burkholderia pseudomallei 576]
 gi|217392632|gb|EEC32655.1| outer membrane protein [Burkholderia pseudomallei 576]
          Length = 673

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 214 AIAKAYSNRTNAGAAGSGVGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505


>gi|218458719|ref|ZP_03498810.1| pilus assembly secretion protein [Rhizobium etli Kim 5]
          Length = 258

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 132/193 (68%), Gaps = 17/193 (8%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           +++ +GLNK +++ +P D  D+LVSDP+ AD V  + R +YLFGK VGQ N+ + G  G+
Sbjct: 58  RRLKLGLNKAVVVDLPEDAHDILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQ 117

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           +++NLDI IERD++ LE  LRRFI DS I VE+VSD +VL G VRT QD+ +A +L++ F
Sbjct: 118 EIINLDIEIERDVSGLEANLRRFIPDSAINVEIVSDNIVLTGTVRTPQDATQAADLAQVF 177

Query: 168 L---SQSGRNQYANSS--------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           L     + R + A+ +              + +V+NLL I GEDQVTLKVTIAEVRR++L
Sbjct: 178 LKGGEATTRTETASGTGGDSAVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVL 237

Query: 211 KQIGFQHSITGSS 223
           KQ+GF + ++ SS
Sbjct: 238 KQLGFDNLVSNSS 250


>gi|116748930|ref|YP_845617.1| type II and III secretion system protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697994|gb|ABK17182.1| type II and III secretion system protein [Syntrophobacter
           fumaroxidans MPOB]
          Length = 482

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 136/437 (31%), Positives = 207/437 (47%), Gaps = 49/437 (11%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           +KI + + K +I++    V    +  P  AD+V  SP  +Y+ GK  G  N+ L   D K
Sbjct: 45  RKIHLQVGKSVIVRSGAPVVRTTLGSPDVADIVALSPTQIYITGKATGVTNLTLWQSDDK 104

Query: 108 QMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
                DI +  D   L+  L   +  + +I+V    D++ L G + +     +A+ L+E 
Sbjct: 105 VSAIYDIEVAPDTMRLKEKLHEVLPGERDIKVSASHDSLTLSGTISSSTHLAQAMTLAEA 164

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------- 217
           +           S  KKV+NLL ++G  QV L+V +AE+ R +  ++G            
Sbjct: 165 Y-----------SGGKKVINLLQVSGVHQVMLEVRVAEMSRTLTNRLGINSIWNVNGSMG 213

Query: 218 -SITGSSSGPSK------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
            S+ G+ +   K            +FA      F   GG F+    +D         AL+
Sbjct: 214 ASLLGNLASLDKFAGSASGSSSEFTFAPTVNSLFHILGGPFTWTAFID---------ALK 264

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
               ++ LAEPTL A+SGQSASF +GG+     V    G   +    +GV L FTPTVL+
Sbjct: 265 EDGLVKVLAEPTLIAMSGQSASFLAGGEFPIP-VPQGLGTVGIEYKQFGVSLAFTPTVLN 323

Query: 325 PGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
             R+ + +  EVSE      I +    +P    RK  T +EL  G +  +AGLLKD I++
Sbjct: 324 DKRMNIIVAPEVSELDYTTAINIAGVAVPGLTTRKVSTAIELNDGQSFAIAGLLKDTIRE 383

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
             +  P+L  IP+LGALFR+  F R ETE+ +  TP L KP+ +     P D + +E   
Sbjct: 384 DAKKFPILGSIPVLGALFRSVSFQRNETELIVIVTPRLAKPIDVATQPLPTDKF-IEPSD 442

Query: 441 KAFFFNRVNKIYGPKEA 457
             FFF  + +   PK A
Sbjct: 443 SEFFFLGLLQGRAPKPA 459


>gi|254192422|ref|ZP_04898861.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|169649180|gb|EDS81873.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
          Length = 690

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505


>gi|90411206|ref|ZP_01219219.1| Flp pilus assembly protein [Photobacterium profundum 3TCK]
 gi|90328052|gb|EAS44373.1| Flp pilus assembly protein [Photobacterium profundum 3TCK]
          Length = 489

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 218/441 (49%), Gaps = 43/441 (9%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           ++V   + + IS+  NK  ++++P   + + V +P  AD+++     +Y+ GK  G  NV
Sbjct: 28  TNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNKIYVLGKQFGTTNV 87

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I+     + +  LD+ +  D+  L+  L  F+ +  I V    + +VL G V +      
Sbjct: 88  IIWDSKDRLITVLDVEVTHDLNALKSKLYEFMPNEKISVYTSQNKLVLSGEVSSADKIAT 147

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           AVE++ TF           ++  +++NL+ + G  QV L+VT+AEV+R ++++   +  +
Sbjct: 148 AVEIANTF-----------TADGEIINLMAVGGSHQVMLEVTVAEVQRSLVREFDSKF-V 195

Query: 220 TGSSSGPSKSFAADFGGKFVSEGG------DFSV--------KGVLDRFSFETVLHALER 265
               SG      A+ G    S  G      D +V         G+   F     L A   
Sbjct: 196 FARQSGNWTWGGANGGASVPSNVGILDPILDAAVSNPLNIDDNGLFASFLSSNTLFAAAF 255

Query: 266 ATA-----IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
             A      + LAEPTLTAISG+ A F SGG+      +      ++   ++GV L F P
Sbjct: 256 DIAKTNGLAKVLAEPTLTAISGEEAEFISGGEFPIPVPNDEN--ITIEFKEFGVALKFLP 313

Query: 321 TVLSPGRIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVL 370
           TV+S   I L +  EVSE      + +  G       +PS   R A TT+EL +G TI +
Sbjct: 314 TVMSADSINLALNIEVSEISNQNAVSITPGGTNSQFFVPSLSKRGAKTTIELGNGQTIGI 373

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL ++I  + + +P L  +PI+G LFR+  F + ETE+ I  TP L KPV  +D++ P
Sbjct: 374 AGLLNENITDVVDKLPGLGDLPIIGQLFRSQSFRKGETELVILVTPRLAKPVRKQDITLP 433

Query: 431 DDHYSVEDDAKAFFFNRVNKI 451
            D++   +D + +   R++++
Sbjct: 434 TDNFVEPNDWEYYLLGRMSEL 454


>gi|254255254|ref|ZP_04948570.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa
           AUO158]
 gi|124900991|gb|EAY71741.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa
           AUO158]
          Length = 682

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 123/407 (30%), Positives = 219/407 (53%), Gaps = 19/407 (4%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+ G  G   
Sbjct: 100 VSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGMSVGTTNMIVQGKSGACR 159

Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +D+ +  D A L+ +L + + +  ++ V   + T+VL G V + Q +Q+AV ++  + 
Sbjct: 160 V-IDVAVGADAAGLQASLMQLMPNERDVHVSTAAGTIVLSGSVSSSQAAQQAVAIARAY- 217

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
             S  +         V+N+L++    QV L+V +AEV + ++ Q+G   +I G     S 
Sbjct: 218 GDSAGDGNGGGKPGSVLNMLSVTSPQQVMLEVKVAEVSKTLINQLGSAFNIQGGFGSWSG 277

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           +  ++     V+ G  F+     +   F   + A      ++ LAEP L  ISGQ A+F 
Sbjct: 278 ALVSNLLAG-VASGAVFNKA---NNRPFSVAVDAQNTDNLVKILAEPNLVTISGQEATFL 333

Query: 289 SGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVN 344
           +GG+    + ++  + T   ++   ++GV L FTPTVL+ GRI L++  EVSE    GV 
Sbjct: 334 AGGKIFIPVPQSSGTGTTTITLQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVT 393

Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                   A  +P    R+A TTV++  G T  + GL+KD+     + IP + ++P+LGA
Sbjct: 394 LSATNVSGASILPLITTRRASTTVQMSDGETFAIGGLIKDNASGALKAIPGVGEVPVLGA 453

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           LFR++ F ++ TE+    TP LVKP++  D++ P D +S  ++A  +
Sbjct: 454 LFRSTSFQQDRTELIFVITPHLVKPLSTADVALPTDSFSKPNEADVY 500


>gi|167574003|ref|ZP_02366877.1| type II/III secretion system protein [Burkholderia oklahomensis
           C6786]
          Length = 548

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/423 (30%), Positives = 217/423 (51%), Gaps = 32/423 (7%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 91  EMREATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGLSVGTTNMIVQ 150

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ + A+ +IRV   +DT+VL G    + D+Q A 
Sbjct: 151 GRSGACQI-IDVAVGADAGGLQTSLRQLMPAERDIRVSTAADTIVLAG---NVSDAQAAQ 206

Query: 162 ELSETFLSQSGRNQYANSSSKK-------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           +      + S R      +          V+N+L +    QV L+V +AEV + ++ Q+G
Sbjct: 207 QAVAIAKAYSDRTNVGPGAGAGAGGPRGGVLNMLTVTSPQQVLLEVKVAEVSKTLINQMG 266

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
              +I G       S+        ++  G+       ++  F+  L A      ++ LAE
Sbjct: 267 SAINIQGGFG----SWTGMLVSSLLAGVGNGIAASKSNKLPFKAALDAQNTDQPVKILAE 322

Query: 275 PTLTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           P L  ISGQ A+F +GG+    + ++  + T   ++   ++GV L FTPTVLS GRI L+
Sbjct: 323 PRLVTISGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVGLKFTPTVLSNGRISLK 382

Query: 332 IQTEVSE-----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +  EVSE            V GV+   +P    R+A TTV++  G T  + GL+KD+ Q 
Sbjct: 383 VAPEVSELSPTGVTLSATNVSGVSI--LPLITTRRASTTVQMGDGETFAIGGLIKDNAQG 440

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               +P + +IP+LGALFR++ F ++ TE+    TP LVKP+   D+  P D ++  ++ 
Sbjct: 441 TLRALPGIGEIPVLGALFRSTSFQQDRTELVFIITPHLVKPLETADVPLPTDSFTKPNEV 500

Query: 441 KAF 443
             +
Sbjct: 501 DVY 503


>gi|332188377|ref|ZP_08390102.1| bacterial type II and III secretion system family protein
           [Sphingomonas sp. S17]
 gi|332011606|gb|EGI53686.1| bacterial type II and III secretion system family protein
           [Sphingomonas sp. S17]
          Length = 511

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/451 (30%), Positives = 224/451 (49%), Gaps = 44/451 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + I   +  ++ +P  + D+ V+D T ADV V SP  +Y+FGK  G+  +      G  +
Sbjct: 52  LEINTGRARLITLPRPMTDLFVADDTIADVQVRSPTQLYIFGKKPGETTISATARGGAVV 111

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
               + I  ++  +   LR  + ++ I    ++  ++L G V    D   A  L + ++ 
Sbjct: 112 YATTVRIGNNLDSIGRMLRLAMPEAQIASTPMNGLILLTGTVAAPDDVAEAERLVQAYVG 171

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG------------FQH 217
           +            KV++ L  A   QV L+V IAEV R+ +K IG            F  
Sbjct: 172 KD----------TKVISRLKTATPLQVNLQVRIAEVNRNFVKSIGVNLLNRDRNSSGFVF 221

Query: 218 SITGSSSGP------SKSFAADFGGKF-VSEGGDFSVKGVLDRFSFETVLHAL---ERAT 267
            I GS   P      + +     G ++  ++G   +  G+  R     +L A+   E   
Sbjct: 222 GI-GSGRNPGTITDLTNAAGTTIGTQYGFNQGPLRTTLGLGGRVLGMDLLGAMDLGETLG 280

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
            + TLA P LTA+SG++A+F +GG+ +   +S+  GA SV    YGV L +TPTVLS GR
Sbjct: 281 QVSTLANPNLTALSGETATFLAGGE-IPIPLSTGLGAVSVEYKQYGVSLSYTPTVLSDGR 339

Query: 328 IGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           I LR++ EVS+      + ++   +P+   R+A+TT+EL SG ++++ GLL +      E
Sbjct: 340 ISLRVRPEVSQITSVGAVTISGTTIPALTTRRAETTLELGSGQSMMIGGLLSNSRDNSIE 399

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKA 442
             P L  +P++GALFR++ F R ETE+ I  TP+LVKPV +  D++ P D     +DA+ 
Sbjct: 400 KTPWLGDLPLIGALFRSNAFKRNETELVIIITPYLVKPVNSPSDIALPTDGQRSPNDAER 459

Query: 443 FFFNRVNKIYG-----PKEASEVEGQNYKGA 468
               R+          P  A+ V+G+   GA
Sbjct: 460 VLLGRMAAGSSEPRPVPTMATPVQGRPVTGA 490


>gi|167924333|ref|ZP_02511424.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei BCC215]
          Length = 438

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/409 (30%), Positives = 217/409 (53%), Gaps = 20/409 (4%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ G  G   
Sbjct: 7   VSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQGKSGACR 66

Query: 110 LNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV +++ + 
Sbjct: 67  I-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVAIAKAYS 125

Query: 169 SQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I G     
Sbjct: 126 NRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNIQGGFG-- 183

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
             S+        ++  G        ++      + A      ++ LAEP L  ISGQ A+
Sbjct: 184 --SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVTISGQEAT 241

Query: 287 FTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE----- 338
           F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++  EVSE     
Sbjct: 242 FLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEVSELSPTG 301

Query: 339 -PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
             +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   + +P + ++P+L
Sbjct: 302 VTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPGIGELPVL 361

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           GALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 362 GALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 410


>gi|167566934|ref|ZP_02359850.1| outer membrane protein [Burkholderia oklahomensis EO147]
          Length = 550

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/423 (30%), Positives = 217/423 (51%), Gaps = 32/423 (7%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 93  EMREATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGLSVGTTNMIVQ 152

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ + A+ +IRV   +DT+VL G    + D+Q A 
Sbjct: 153 GRSGACQI-IDVAVGADAGGLQTSLRQLMPAERDIRVSTAADTIVLAG---NVSDAQAAQ 208

Query: 162 ELSETFLSQSGRNQYANSSSKK-------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           +      + S R      +          V+N+L +    QV L+V +AEV + ++ Q+G
Sbjct: 209 QAVAIAKAYSDRTNVGPGAGAGAGGPRGGVLNMLTVTSPQQVLLEVKVAEVSKTLINQMG 268

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
              +I G       S+        ++  G+       ++  F+  L A      ++ LAE
Sbjct: 269 SAINIQGGFG----SWTGMLVSSLLAGVGNGIAASKSNKLPFKAALDAQNTDQPVKILAE 324

Query: 275 PTLTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           P L  ISGQ A+F +GG+    + ++  + T   ++   ++GV L FTPTVLS GRI L+
Sbjct: 325 PRLVTISGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVGLKFTPTVLSNGRISLK 384

Query: 332 IQTEVSE-----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +  EVSE            V GV+   +P    R+A TTV++  G T  + GL+KD+ Q 
Sbjct: 385 VAPEVSELSPTGVTLSATNVSGVSI--LPLITTRRASTTVQMGDGETFAIGGLIKDNAQG 442

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               +P + +IP+LGALFR++ F ++ TE+    TP LVKP+   D+  P D ++  ++ 
Sbjct: 443 TLRALPGIGEIPVLGALFRSTSFQQDRTELVFIITPHLVKPLETADVPLPTDSFTKPNEV 502

Query: 441 KAF 443
             +
Sbjct: 503 DVY 505


>gi|294139870|ref|YP_003555848.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
 gi|293326339|dbj|BAJ01070.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
          Length = 442

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/418 (33%), Positives = 207/418 (49%), Gaps = 58/418 (13%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ LNK  ++Q+P   + + +S  T AD    +   + +FGK  G  ++ ++  D   +
Sbjct: 3   LAVTLNKAELVQLPKTAKSIFISSNTIADYQALTNTKIMVFGKRAGTTSLYVLDADENVI 62

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            +  + +  ++  L   +R    D+ +  E ++  + L G V T   +++ V LSE ++S
Sbjct: 63  YSASVKVSHNVTELNGLIRSEFPDALVSAESIAGKLFLKGRVPTPTMAEKIVRLSEGYVS 122

Query: 170 Q----SGRNQYANSSSK------------------------KVMNLLNIAGEDQVTLKVT 201
           Q     G+ Q   SS +                        +++N L I    QV L+V 
Sbjct: 123 QPQSSKGKQQGGKSSGQAKGSKQQGQNGGGQESQSGTGSKGELINQLEITMSTQVNLRVR 182

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-GKFV-SEGGDFSVKGVLDRFSFETV 259
           IAEV R++  ++G +    G            FG GKF  S+G  FS   V+        
Sbjct: 183 IAEVSRNVSNKLGIKWGSQG------------FGTGKFAFSDGLGFSKLSVM-------- 222

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + AL     I  LAEP LTAISG+ ASF  GG+     +   T   S+    +GV L F 
Sbjct: 223 VDALATNGMITVLAEPNLTAISGEKASFLVGGEVPIPLIYGDT--VSIEYKPFGVRLDFK 280

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA--GD--MPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PTVLSP RI L+I+ EVS      N   GD   P +  RKA TT+EL SG +  L GLL+
Sbjct: 281 PTVLSPNRISLQIEPEVSTISQSTNVVMGDSSFPVFMTRKASTTIELASGQSFALGGLLQ 340

Query: 376 D-DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
             DI+Q+++ +P +  IPILGALFR++ F REETE+ I AT +LV+P     L  P D
Sbjct: 341 STDIEQMQK-MPWIGDIPILGALFRSNEFKREETELIIIATVYLVEPTRGDSLPLPTD 397


>gi|126445563|ref|YP_001064076.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|126225054|gb|ABN88559.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
          Length = 690

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/420 (29%), Positives = 219/420 (52%), Gaps = 24/420 (5%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSKK------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
            +++ + +++      +           V+N+L +    QV L+V +AEV + ++ Q+G 
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGNGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGS 273

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
             +I G       S+        ++  G        ++      + A      ++ LAEP
Sbjct: 274 AVNIQGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEP 329

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRI 332
            L  ISGQ A+F +GG+       SS   T+  T    ++GV L FTPTVLS GRI L++
Sbjct: 330 RLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKV 389

Query: 333 QTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             EVSE       +   N G+   +P    R+A TTV++  G T  + GL+KD+ Q   +
Sbjct: 390 APEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLK 449

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +P + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 450 ALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 509


>gi|172065273|ref|YP_001815985.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
 gi|171997515|gb|ACB68432.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
          Length = 656

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 217/422 (51%), Gaps = 19/422 (4%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+ G  G   
Sbjct: 100 VSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQGRSGACR 159

Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +D+ +  D   L+ +L++ +  + +I V   + T+VL G V   Q +Q+AV+++  + 
Sbjct: 160 V-IDVAVGADAGGLQSSLQQLMPGERDIHVSTAAGTIVLAGTVSNSQAAQQAVQIAHAY- 217

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
           S S  +         V+N+L +    QV L+V +AEV + ++ Q+G   +I G     S 
Sbjct: 218 SDSAGDGGGAGKGAGVLNMLAVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQGGFGSWSG 277

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           +  ++      S G    +    +   F     A      ++ LAEP L  ISGQ A+F 
Sbjct: 278 ALVSNLLAGVASAG----IFNKANNKPFSVAADAQNTDNLVKILAEPNLVTISGQEATFL 333

Query: 289 SGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE------P 339
           +GG+       SS   TS  T    ++GV L FTPTVL+ GRI L++  EVSE       
Sbjct: 334 AGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVT 393

Query: 340 VIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           +   N G    +P    R+A TTV++  G +  + GL+KD+     + IP + ++P+LGA
Sbjct: 394 LSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGVGEVPVLGA 453

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           LFR++ F ++ TE+    TP LV+P+   D+  P D +S  ++   +    +    G ++
Sbjct: 454 LFRSTSFQQDRTELIFLITPHLVRPLQTADVPLPTDSFSKPNEVDVYATGNMEGRKGVRK 513

Query: 457 AS 458
           A+
Sbjct: 514 AT 515


>gi|163733542|ref|ZP_02140985.1| type II/III secretion system protein, putative [Roseobacter
           litoralis Och 149]
 gi|161393330|gb|EDQ17656.1| type II/III secretion system protein, putative [Roseobacter
           litoralis Och 149]
          Length = 440

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 220/441 (49%), Gaps = 34/441 (7%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + +++  N+ ++++  +   ++ +++P  AD+   S R++Y+ GK  G   + L+   G+
Sbjct: 20  ETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSDRSIYVLGKVPGITTLTLLDAAGQ 79

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + N+++ +  D+   +  LR+ +    I V   +D +VL G V + Q   +A+EL+   
Sbjct: 80  LITNVEVRVAPDLTEFKERLRQILPGEAIEVRTANDGIVLSGQVSSSQRLSKALELA--- 136

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                    A  +  +V NL+ + G  QV LKV  AE+ R + KQ+     I G+ +   
Sbjct: 137 ---------ARYAPDRVSNLMTVGGVQQVMLKVRFAEMSRGVSKQLQSSLRIGGTEAQAG 187

Query: 228 K--------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                    + AAD      ++G  F   G L     + +L ALE   A+RTLAEP L +
Sbjct: 188 IGRGIGGIPNLAAD-----TAQGAVFFDFG-LGSTQVQLLLEALETKGAVRTLAEPNLVS 241

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-- 337
           +SGQ A+F +GG+  Y     S    SV    +G+ L+F P V+    I L++    S  
Sbjct: 242 LSGQEANFLAGGE--YPVPVQSEDGISVDYKPFGIELNFVPRVVDGDLINLQLSAATSSI 299

Query: 338 EPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +P  G++ GD   + ++  R+A TTVE+  G +  +AGLL+D+       +P LS +PIL
Sbjct: 300 DPSNGISVGDSFTVDAFIRREASTTVEMRDGESFAIAGLLEDNFNDNISQVPWLSDVPIL 359

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR-VNKIYG 453
           GALFR++ + R +TE+ I  T  LV P     L+ P D      +   F   R +  +  
Sbjct: 360 GALFRSTDYMRNQTELVIIITAHLVTPTRGEALALPTDRIRPPSEKDLFLNGRTIQTLNA 419

Query: 454 PKEASEVEGQNYKGAIGFIYK 474
              A EV  Q++ G+ G++ +
Sbjct: 420 RGAAGEVAKQDFGGSYGYVME 440


>gi|251789646|ref|YP_003004367.1| type II and III secretion system protein [Dickeya zeae Ech1591]
 gi|247538267|gb|ACT06888.1| type II and III secretion system protein [Dickeya zeae Ech1591]
          Length = 474

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/418 (31%), Positives = 213/418 (50%), Gaps = 32/418 (7%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           +I    +I + +N+  +LQ+      VL++DP  A   + SP  +++F K VG   +  +
Sbjct: 38  QIEATSEIRLNINQGRMLQLDHIPDSVLIADPAIASFELPSPGNVFVFAKGVGNTTLYAM 97

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAV 161
             DG+ +  + +++E D+  L+  LRR   D+ I++E  V + V++ G V T QD+++ +
Sbjct: 98  DVDGQVVSAIHLVVEHDLDALKERLRREFPDAQIQLEASVPNGVIVRGSVETPQDAKKVI 157

Query: 162 ELSETFLSQSGRNQY--------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
           +  + ++  S  ++               ++S+S  V+N L +    Q+ ++V + EV R
Sbjct: 158 DSVQAWVGASASSRGSAGGGGGGGSAMPASSSTSPNVVNQLKVRTPSQINIRVRVVEVSR 217

Query: 208 DILKQIGFQ--------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV--KGVLDRFSFE 257
            +  ++GF          +  G  SG   +F +     F  E G  S+         S  
Sbjct: 218 KLTHELGFNWDSSLNRGRNTIGFGSGALSNFFSATSNTFSREAGSASLGYNYTGSDGSLG 277

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
           T+L AL        LAEP LTA+SG++A+F +GG+     V  +  + S+    YGV+L 
Sbjct: 278 TLLSALNSQGMASVLAEPNLTAMSGETAAFAAGGE--VPIVLITGNSVSIDYKSYGVILR 335

Query: 318 FTPTVLSPGRIGLRIQTEVSEPV----IGVNAGD-MPSYRVRKADTTVELPSGGTIVLAG 372
            TPT+LS  RI L I  EVSE      + +  G  +P+  VR+ADTTVEL SG +  LAG
Sbjct: 336 MTPTLLSANRISLHIAPEVSELTSVGSVQLEGGSTIPALTVRRADTTVELASGQSFALAG 395

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           +L+    Q   G+P LS IP+LG  F     + EETE+ I AT ++V PV+   L  P
Sbjct: 396 MLRSSNSQTVAGVPGLSGIPLLGRAFERESTSSEETELVIIATAYVVAPVSAGTLQTP 453


>gi|303248302|ref|ZP_07334564.1| type II and III secretion system protein [Desulfovibrio
           fructosovorans JJ]
 gi|302490327|gb|EFL50239.1| type II and III secretion system protein [Desulfovibrio
           fructosovorans JJ]
          Length = 528

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/470 (28%), Positives = 229/470 (48%), Gaps = 72/470 (15%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           AA   +  V +    ++S+ + K +ILQ   DV  V V+ P  AD V+ SPR +Y+ G+ 
Sbjct: 28  AAPGRMGTVAVRTAPRLSLTIGKSVILQSDADVSRVSVAQPEIADFVLLSPRQIYVTGRA 87

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVR 152
            G  N+ L     K     D+ +  DI+ L+  L   +  +S I V    D++ L G VR
Sbjct: 88  PGITNLTLWDKGDKVRAVYDLDVAPDISRLKKMLHDVMPGESGIEVMSSQDSIALSGTVR 147

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
              + ++A+ L+E +            + KKV+NLL++ G  QV L+V +AE+ + ++ +
Sbjct: 148 DSANMKKALALAEVY------------APKKVLNLLSVGGVQQVMLEVRVAEMSKSLVNR 195

Query: 213 IG----------FQHSITGS----SSGPSKSFAADFGGKFVS---EGGD----------- 244
           +G          F +++ GS    +SG   ++      ++++     GD           
Sbjct: 196 MGINLNAVGDGNFAYTLIGSLSSVASGMFDTYYPQNAYQYITMTANSGDGNSSFDSTPIQ 255

Query: 245 ----------------FSVKGVLDRF----------SFETVLHALERATAIRTLAEPTLT 278
                           F+    + R+          +   V+  L++   ++ LAEP L 
Sbjct: 256 LAYREFNQPSSKATMSFNQGTAVARWNTNFGGAGNTAMTAVVDMLKQNGLVKILAEPNLV 315

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            ++GQSA F +GGQ +   VSS  G TS+    +GV L+FTPTV++  RI L++  EVS 
Sbjct: 316 CLNGQSADFLAGGQ-IPVPVSSGLGTTSIEWKKFGVQLNFTPTVVAGDRINLKVNPEVSN 374

Query: 339 ----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                 I +    +P+   R+  TT+EL +G T  +AG+L +  +   +  P+L  IP+L
Sbjct: 375 LDYTRAITLLGSTVPAINTRQTSTTIELKNGQTFAIAGMLNEQSRDSMDKYPVLGDIPVL 434

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           GALF++S++ +++TE+ I  T  LVKP+  + +S P D     DD + F 
Sbjct: 435 GALFKSSQYQKDQTELVILITAHLVKPLDKKAISLPTDSAHEPDDLEFFL 484


>gi|253687068|ref|YP_003016258.1| type II and III secretion system protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753646|gb|ACT11722.1| type II and III secretion system protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 478

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/417 (31%), Positives = 220/417 (52%), Gaps = 29/417 (6%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++ + +N+  +LQ+      VLV+DP  A   + SP  ++++ K+VG   +  +  +G  
Sbjct: 55  EVHLTVNQGRLLQLADTPDSVLVADPNIASFELPSPGNLFVYAKSVGVTTLYAMDENGNV 114

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETF 167
           +  + ++ E D+  L   ++R    ++I++E  +   V++ G V T QD++R ++  + +
Sbjct: 115 INAIRLVSEHDLKALGERMKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAY 174

Query: 168 LSQSGRNQY-----------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +S S   Q            ++ SS KV+N L I    Q+ ++V + EV R +  ++GF 
Sbjct: 175 ISASSGGQGGGGGGGEKLPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFN 234

Query: 217 HSITGSSSGPSKSFAADFGGK---FVSEGGDFSV---KGVLD--RFSFETVLHALERATA 268
            + + S+   S + +A  G +   F +  G FS     G L+  R     +L A+ +   
Sbjct: 235 WAASLSTG--SGNMSAGSGSRLNLFNATTGRFSNPTDSGFLNFGRSRLSGLLTAMNQQGM 292

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
              LAEP LTA+SG++A+F +GG+     V  +  + S+    YGV+L  TPT+LS  RI
Sbjct: 293 ATVLAEPNLTAMSGETAAFAAGGE--VPIVLITNNSVSIDYKSYGVILRMTPTLLSANRI 350

Query: 329 GLRIQTEVSEPV----IGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            L I  EVSE      + +  G  +P+  VR+ADTTVEL SG +  LAG+L+    Q   
Sbjct: 351 SLHIAPEVSELTDVGSVQLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTIN 410

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           G+P LS +P+ G LF +   ++EETE+ I AT ++V+PV   DL  P     + D +
Sbjct: 411 GVPGLSSVPMFGRLFESEATSQEETELVIIATAYVVEPVNAGDLQTPGQGVKMLDSS 467


>gi|115361033|ref|YP_778170.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
 gi|115286361|gb|ABI91836.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
          Length = 657

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 210/399 (52%), Gaps = 18/399 (4%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+ G  G   
Sbjct: 100 VTVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQGRSGACR 159

Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +D+ +  D   L+ +L++ +  + +I V   + T+VL G V   Q +Q+AV+++  + 
Sbjct: 160 V-IDVAVGADAGGLQSSLQQLMPGERDIHVSTAAGTIVLAGTVSNSQAAQQAVQIAHAYS 218

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
             +G           V+N+L +    QV L+V +AEV + ++ Q+G   +I G     S 
Sbjct: 219 DSAGEGAGGAGKGAGVLNMLAVTSPQQVMLEVKVAEVSKTLINQMGTAFNIQGGFGSWSG 278

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           +  ++      S G    +    +   F     A      ++ LAEP L  ISGQ A+F 
Sbjct: 279 ALVSNLLAGVASAG----IFNKANNKPFSVAADAQNTDNLVKILAEPNLVTISGQEATFL 334

Query: 289 SGGQHLYKTV-SSSTGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSE------P 339
           +GG+       SS TG +S+T  +  +GV L FTPTVL+ GRI L++  EVSE       
Sbjct: 335 AGGKIFIPVPQSSGTGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVT 394

Query: 340 VIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           +   N G    +P    R+A TTV++  G +  + GL+KD+     + IP + ++P+LGA
Sbjct: 395 LSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGSLKAIPGVGEVPVLGA 454

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           LFR++ F ++ TE+    TP LV+P+   D+  P D +S
Sbjct: 455 LFRSTSFQQDRTELIFLITPHLVRPLQTADVPLPTDSFS 493


>gi|152994347|ref|YP_001339182.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
 gi|150835271|gb|ABR69247.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
          Length = 463

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 222/443 (50%), Gaps = 20/443 (4%)

Query: 11  MMSIFLFSSNPSVAKLPPIK---EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           +  +FL S     A L P+    E+ + +   +  ++     +++ +N+  +L +P +  
Sbjct: 13  LFGVFLLSGVSRAAYLEPMNNTSESQSVIGTSAYQQVEVSGNVNLVVNRGKLLTLPQNAA 72

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            VL+++P  A   + SP  +++F K  G  ++  +  + + +L L +    D+  L   +
Sbjct: 73  KVLIANPDIASFQMPSPDNVFVFAKKSGSTSLYALDDENQVILALTLNAGYDLNSLTKQV 132

Query: 128 RRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQRAVELSETFLSQSGRNQY-ANSSSKKVM 185
            + +  SN++V   ++  +++ G V+T Q ++R ++  E F+         A S + +++
Sbjct: 133 AQEVPGSNVQVGPATENGLIVRGSVQTPQQAKRVIDSVEAFVGGDATGSAGAGSQTLRIV 192

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           N L +    Q+ + V I EV R++   +GF       +    K FA +    F +  G F
Sbjct: 193 NQLKVELSSQINISVRIVEVSRNLSSSLGFSWDALFDNG---KYFARNSASLFDATTGAF 249

Query: 246 SVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +  GV +        +   VL AL        LAEP LTA+SG++A F  GG+     ++
Sbjct: 250 TGSGVTNAVFGGASGNLGGVLSALSNDGLASILAEPNLTAMSGETAGFAVGGEVPIVIIT 309

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRK 355
           ++    ++    YGV++  TPT+LSP RI L I  EVS    E  + +    +P+++VR+
Sbjct: 310 NNN--VTIEYKQYGVIMRMTPTLLSPNRISLHIAPEVSDLTEEGAVELQGLTVPAFKVRR 367

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ADTTVEL SG +  LAG+L+  + Q   G+P L  IP LG LF +    +EETE+ I AT
Sbjct: 368 ADTTVELASGQSFALAGMLRSSVSQTVTGVPGLRSIPGLGRLFESETNQKEETELVIIAT 427

Query: 416 PFLVKPVAMRDLSRPDDHYSVED 438
            ++V P +  DL  P    S  D
Sbjct: 428 AYVVAPTSSGDLQTPAKGISTID 450


>gi|28899193|ref|NP_798798.1| putative pilus assembly transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153836824|ref|ZP_01989491.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
 gi|260361569|ref|ZP_05774596.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030]
 gi|260876726|ref|ZP_05889081.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034]
 gi|260898195|ref|ZP_05906691.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466]
 gi|260900397|ref|ZP_05908792.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037]
 gi|28807417|dbj|BAC60682.1| putative pilus assembly transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149749970|gb|EDM60715.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
 gi|308089085|gb|EFO38780.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466]
 gi|308091468|gb|EFO41163.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034]
 gi|308109123|gb|EFO46663.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037]
 gi|308114031|gb|EFO51571.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030]
 gi|328474270|gb|EGF45075.1| pilus assembly protein CpaC [Vibrio parahaemolyticus 10329]
          Length = 487

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 129/428 (30%), Positives = 211/428 (49%), Gaps = 26/428 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G+ +S+  ++   L +    + V + DP   D+VV     ++L GK +G  NV +    G
Sbjct: 26  GRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNELFLIGKKLGTTNVSVWDSRG 85

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +   ++ +  D+  L+  L +F+ D +I V    + VVL G+V + Q+   AV+++ET
Sbjct: 86  RLIEQFNVEVTHDLNTLKSKLFQFLPDESIEVHSAQEKVVLRGLVSSQQNMDIAVKIAET 145

Query: 167 FL---SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           F    +    +  A      V+NLL+I G  QVTL+VT+AEV+R ++++           
Sbjct: 146 FALGDAADEEDDNAKDDESSVINLLSIGGAQQVTLEVTVAEVQRSLVRRFDSNFHFF-QK 204

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVK-----GVLDRF-----SFETVLHALERATAIRTLA 273
           SG     A   GG   + G   +V      G L  F      F   L   ++    + LA
Sbjct: 205 SGDFTWGATTAGGGIDNIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAKQNGVAKVLA 264

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           EP+LTA+SG  A F +GG+  +     +    ++   +YGV L F P +LS  RI L++ 
Sbjct: 265 EPSLTALSGTQAEFVAGGE--FPIPVPNEDGITIDYKEYGVQLDFVPFILSDKRINLKLN 322

Query: 334 TEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             VSE     V+  N  +      +P    R A TT+EL  G TI +AGLL ++ + + +
Sbjct: 323 VNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLSENARNVAD 382

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           GIP  S +P+LG LF++  F   ETE+ I  TP L  P+  R ++ P D +   +D + +
Sbjct: 383 GIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRVTLPTDGFVAPNDVEFY 442

Query: 444 FFNRVNKI 451
              +  K+
Sbjct: 443 LLGKGAKL 450


>gi|85373131|ref|YP_457193.1| type II secretion system protein [Erythrobacter litoralis HTCC2594]
 gi|84786214|gb|ABC62396.1| type II secretion system protein [Erythrobacter litoralis HTCC2594]
          Length = 574

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 146/475 (30%), Positives = 231/475 (48%), Gaps = 74/475 (15%)

Query: 22  SVAKLP----PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           S+A LP    P + A+A  I    V+  +   +SIG  ++I   VP  + DV +++   A
Sbjct: 39  SLAALPVAAGPAQVAHAQSI----VKPSQDVVLSIGRGELI--SVPGAMADVFIANDAVA 92

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           DV + S R +Y+FGK+ G+  +      G  +   ++ +  +I  L+  L   + ++ I 
Sbjct: 93  DVQIKSQRQLYVFGKSGGETTIYASNSAGDVIWAANVRVANNIDSLDQMLALAMPEAKIA 152

Query: 138 VE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
              M ++TV+L G V   +D+  A  L   FL   G N         V++ L +A   QV
Sbjct: 153 TATMGTNTVLLTGTVAAPEDAAEAERLVTAFLGD-GAN---------VISRLKMATPLQV 202

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG----------------------PSKSFAADF 234
            L+V IAEV R ++++IG   +   ++ G                      P    +A F
Sbjct: 203 NLQVRIAEVSRSLVREIGSNLTTRDTTDGFLFGVNRGRNFGSITDIDTSGFPQLDASAQF 262

Query: 235 G--------------GKFVSEGGDFSVK------------GVLDRFSFETVLHALERATA 268
           G              G+FV  G +F V             G L      +     ER   
Sbjct: 263 GLPPGSLSLPFNPATGQFVVGGANFPVASNNPGQTALNFAGRLFGLDIASAFDVGERLGL 322

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           I TL+ P LTA+SG++A+F +GG+     +S   G TS+   ++GV L ++PTVL+ GRI
Sbjct: 323 ITTLSNPNLTALSGETATFLAGGEFPIP-ISQGLGTTSIEYRNFGVSLAYSPTVLANGRI 381

Query: 329 GLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            +R++ EVSE      I +N   +P+   R+A+TTVEL SG + ++AGL+ +  Q   + 
Sbjct: 382 SIRVRPEVSELSSQGAITLNGFQIPALTTRRAETTVELGSGQSFMIAGLMSNSSQNTVDK 441

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
            P L  +PI+G LFR++ F + ETE+ I  TP+LVKPV   D+  P D Y   ++
Sbjct: 442 APGLGDVPIIGNLFRSTSFRKGETELVIVVTPYLVKPVDGTDIKLPTDGYQTPNE 496


>gi|50119734|ref|YP_048901.1| hypothetical protein ECA0789 [Pectobacterium atrosepticum SCRI1043]
 gi|49610260|emb|CAG73703.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 478

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 222/423 (52%), Gaps = 29/423 (6%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   + + +++  +LQ+      VLV+DP  A   + SP  ++++ K+VG   +  +
Sbjct: 49  EVAETNVVHLTVHQGRLLQLDALPDSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAM 108

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAV 161
             +G  +  + ++ E D+  L   ++R    ++I++E  +   V++ G V T QD++R +
Sbjct: 109 DENGNVINAIRLVSEHDLKALGERMKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVI 168

Query: 162 ELSETFLSQSGRNQY-----------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           +  + ++S S   Q            ++ SS KV+N L I    Q+ ++V + EV R + 
Sbjct: 169 DSIQAYISASAGGQGGGGGGGEKLPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLT 228

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGK---FVSEGGDFSV---KGVLD--RFSFETVLHA 262
            ++GF  + + S+   S + +A  G +   F +  G F+     G L+  R     +L A
Sbjct: 229 SELGFNWAASLSTG--SGNMSAGSGSRLNLFNATTGRFANPTDSGFLNFGRSRLSGLLTA 286

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           + +      LAEP LTA+SG++A+F +GG+     V  +  + S+    YGV+L  TPT+
Sbjct: 287 MNQQGMATVLAEPNLTAMSGETAAFAAGGE--VPIVLITNNSVSIDYKSYGVILRMTPTL 344

Query: 323 LSPGRIGLRIQTEVSEPV----IGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           LS  RI L I  EVSE      + +  G  +P+  VR+ADTTVEL SG +  LAG+L+  
Sbjct: 345 LSANRISLHIAPEVSELTDVGSVQLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSA 404

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             Q   G+P LS +P+ G LF +   ++EETE+ I AT ++V+PV   DL  P     + 
Sbjct: 405 GSQTINGVPGLSSVPMFGRLFESESTSQEETELVIIATAYVVEPVNAGDLQTPGQGVKML 464

Query: 438 DDA 440
           D +
Sbjct: 465 DSS 467


>gi|87199534|ref|YP_496791.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135215|gb|ABD25957.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 517

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 209/443 (47%), Gaps = 72/443 (16%)

Query: 60  LQVPVDVQDVLVSDPTKA----------DVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           L+VPV+   V+ +D T A          DV+  + R++Y+ GK +G  ++ L    G+ +
Sbjct: 41  LEVPVNKSQVVSTDRTIAKALVGNDDIADVLPVTTRSIYVLGKKMGTTSLTLYDATGRVL 100

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
             +D+ +  D+  L   L+ F+ +  I   + +D +VL G+V       RAV+L+ T+  
Sbjct: 101 SIMDVAVGPDVEGLRSQLKTFVPNDKIDARLSNDAIVLSGLVNDPGAIDRAVQLARTY-- 158

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                     +  KV+NL+++    QV L+V  AEV R      GF   ++G +S  +  
Sbjct: 159 ----------AGDKVVNLISLGSSQQVMLEVKFAEVNR----TAGFDVGVSGFASKGTFE 204

Query: 230 FAADFGGKFVSEGGDFSVKG---------------------------------VLDRFSF 256
            A   G + V  G D +V G                                  +D    
Sbjct: 205 SAIGKGAQLV-PGADVTVSGNSGGVSTSTTIPGASILKLSSITGSFGIFRKSFSIDGLGI 263

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------ATSVT 308
           + VL+ALE     +TLA+PTL A+SG+ ASF +GG+     V S T         A +V 
Sbjct: 264 DAVLNALETKGMAKTLAQPTLLALSGERASFLAGGEFPVPVVQSGTTGTGNGNGGAITVE 323

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDM--PSYRVRKADTTVELPS 364
              +GV L FTPTVL    I L ++ EVS  +P   +  G +  P  R R+A TT+EL  
Sbjct: 324 FKPFGVSLGFTPTVLGDKTINLLVEPEVSAIDPTASLTVGSITIPGLRTRRASTTLELRD 383

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G +  +AGLL+ D +   + +PLL  +PI+G+LFR+S F++ ETE+ I  TP LV P+  
Sbjct: 384 GESFAIAGLLQKDFKTSVQQLPLLGSLPIIGSLFRSSAFSKGETELLIVVTPRLVSPIKP 443

Query: 425 RDLSRPDDHYSVEDDAKAFFFNR 447
             +  P D  +    A   F   
Sbjct: 444 EQVRLPTDAVTDPSAASTIFLGE 466


>gi|110679396|ref|YP_682403.1| type II/III secretion system protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455512|gb|ABG31717.1| type II/III secretion system protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 463

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 128/439 (29%), Positives = 219/439 (49%), Gaps = 34/439 (7%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + +++  N+ ++++  +   ++ +++P  AD+   S R++Y+ GK  G   + L+   G+
Sbjct: 43  ETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSDRSIYVLGKVPGITTLTLLDAAGQ 102

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + N+++ +  D+   +  LR+ +    I V   +D +VL G V + Q   +A+EL+   
Sbjct: 103 LITNVEVRVAPDLTEFKERLRQILPGEAIEVRTANDGIVLSGQVSSSQRLSKALELA--- 159

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                    A  +  +V NL+ + G  QV LKV  AE+ R + KQ+     I GS +   
Sbjct: 160 ---------ARYAPDRVSNLMTVGGVQQVMLKVRFAEMSRGVSKQLQSSLRIGGSDAQAG 210

Query: 228 K--------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                    + AAD      ++G  F   G L     + +L ALE   A+RTLAEP L +
Sbjct: 211 IGRGIGGIPNLAAD-----SAQGAVFFDFG-LGSTQVQLLLEALETKGAVRTLAEPNLVS 264

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-- 337
           +SGQ A+F +GG+  Y     S    SV    +G+ L+F P V+    I L++    S  
Sbjct: 265 LSGQEANFLAGGE--YPVPVQSEDGISVDFKPFGIELNFVPRVVDGDLINLQLSAATSSI 322

Query: 338 EPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +P  G++ GD   + ++  R+A TTVE+  G +  +AGLL+D+       +P +S +PIL
Sbjct: 323 DPSNGISVGDGFTVDAFIRREASTTVEMRDGESFAIAGLLEDNFNDNITQVPWISDVPIL 382

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR-VNKIYG 453
           GALFR++ + R +TE+ I  T  LV P     L+ P D      +   F   R +  +  
Sbjct: 383 GALFRSTDYMRNQTELVIIITAHLVTPTRGEALALPTDRIRPPSEKDLFLNGRTIETLNA 442

Query: 454 PKEASEVEGQNYKGAIGFI 472
              A EV  Q++ G+ G++
Sbjct: 443 RGSAGEVAKQDFSGSYGYV 461


>gi|319941902|ref|ZP_08016223.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804555|gb|EFW01425.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis
           3_1_45B]
          Length = 485

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 123/406 (30%), Positives = 206/406 (50%), Gaps = 35/406 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +S+ L +   L     +  V V+ P+ A   V   R + +FG   G+ +++++G DG+ +
Sbjct: 1   MSVSLYQGKALSFNEQIGAVFVAQPSIASYQVVGNRKVVVFGSYPGKTSLMVLGTDGRTL 60

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL- 168
            N  + +  D++ +EM L+       +++  ++D V + G V T Q++   V   +  L 
Sbjct: 61  YNGLVEVAYDVSSMEMALKSSFPKLKLQLVALNDGVAVRGKVETAQEAANVVAFLDAMLQ 120

Query: 169 ----------------SQSGRNQYANSSSK---------KVMNLLNIAGEDQVTLKVTIA 203
                            Q G+ + + +++          K++N L +   +QVT++V  A
Sbjct: 121 VNPQQAQMAAADVSAAGQEGQQEKSGAATGTGTLGARIGKIINQLTVTTPNQVTVRVRFA 180

Query: 204 EVRRDILKQIGFQH--SITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVLDRFSFETV 259
           EV R +  Q+GF+   S +GS  G +   A +        S G  F    +  RF+F ++
Sbjct: 181 EVNRKLSDQLGFKWKGSYSGSRGGITFGSADNPIISNPNNSLGHLFDPATMAARFTFGSL 240

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
             A+     +  LAEP LT +SG++ASF +GGQ  +++ S   G   +   DYGV+L  T
Sbjct: 241 FDAMASEELVSILAEPNLTVVSGETASFLAGGQIPFQS-SDGDGGFDIEFKDYGVLLSIT 299

Query: 320 PTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PT+LS  RI LR++ EVSE      I       P + VR+A++T+EL SG +  +AGLLK
Sbjct: 300 PTILSGNRISLRLRPEVSERSDSNGIQFMGSTQPGFIVRRAESTIELASGQSFAIAGLLK 359

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +D       IP ++ +PI+GAL R+  F R ETE+ I AT ++  P
Sbjct: 360 NDFSNTVNKIPGIADLPIIGALARSKAFERGETELVIVATAYISTP 405


>gi|283852073|ref|ZP_06369347.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
 gi|283572463|gb|EFC20449.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
          Length = 527

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 133/460 (28%), Positives = 211/460 (45%), Gaps = 82/460 (17%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           K+S+ + K +ILQ   DV  V V+ P  AD V+ SPR +Y+ G+  G  N+ L     K 
Sbjct: 43  KLSLTIGKSVILQSDADVSRVSVAQPEIADFVLLSPRQVYVTGRAPGVTNLTLWDKGDKI 102

Query: 109 MLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
               D+ +  DI  L+  L   +  +  I V    D + L G VR  ++ ++A+ L+E +
Sbjct: 103 RAVYDLDVAPDITRLKKMLHDVLPGEPGIEVRASQDAIALAGTVRDAENMKKALTLAEVY 162

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                       + KKV+NL+ + G  QV L+V +AE+ + +L ++G   +  G  +   
Sbjct: 163 ------------APKKVVNLMAVGGVQQVMLEVRVAEMSKSVLNRMGINLNAIGDGN--- 207

Query: 228 KSFAADFGGKFVSEGGDF---------------SVKGVLDRFSFET-------------- 258
             FA    G   S  G                 + KG     SF++              
Sbjct: 208 --FAYTLIGGLTSVAGSMFNMDATQNVYQYITMTAKGADGNTSFDSSPIQLSYREFNQPS 265

Query: 259 ------------------------------VLHALERATAIRTLAEPTLTAISGQSASFT 288
                                         VL  L+    ++ LAEP L  ++GQ+A F 
Sbjct: 266 NRATATMNQGTAVARWNTNWGGAGNTAMTAVLDVLKENGLVKILAEPNLVCLNGQTADFL 325

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVN 344
           +GGQ +   V S  G TS+   D+GV L FTPT++   RI L++  EVS+      I + 
Sbjct: 326 AGGQ-IPVPVPSGLGTTSIEWKDFGVGLKFTPTIVGGDRINLQVHPEVSDLDYAHAIQLQ 384

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+   R+  TTVEL +G T  +AG+LK++ +   +  P++  IPILG LF++S+F 
Sbjct: 385 GSTIPAINTRRTSTTVELKNGQTFAVAGMLKEEARSTFDKYPVVGDIPILGNLFKSSQFQ 444

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +++TE+ I  T  L KP+  + +S P D     DD + F 
Sbjct: 445 KDQTELVILITAHLAKPLDKKAVSLPTDSAHEPDDLEFFL 484


>gi|73542329|ref|YP_296849.1| type II and III secretion system protein:transport-associated
           [Ralstonia eutropha JMP134]
 gi|72119742|gb|AAZ62005.1| type II and III secretion system protein:Transport-associated
           [Ralstonia eutropha JMP134]
          Length = 633

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 218/417 (52%), Gaps = 34/417 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + +G +++I LQ PV  ++  + +P      + S +T+Y+ G+ VG  N+I+ G  G   
Sbjct: 96  VPVGKSQLITLQEPV--KNRTLGNPNVVQATMVSAQTLYVLGRTVGTTNMIVQGRSGSCS 153

Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +++++  D   L+ +L + +  +  IRV   +D +VL G V   Q + +A+++++ + 
Sbjct: 154 I-INVVVNADAGGLQTSLSQLLPGEPGIRVMTAADNLVLTGSVTNAQSALQAMDIAQAYA 212

Query: 169 SQSG-RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
           + +             V+N+L++    QV L+V +AEV + +L Q+G   ++ G      
Sbjct: 213 NAAQVGAGGDAGKKGGVLNMLSVDTPQQVMLEVKVAEVSKTLLNQLGSSVNLQGG----- 267

Query: 228 KSFAADFGGKFVS-----EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
             F +  GG   S      G  F  K     F+F   + A +  + ++ LAEP L  ISG
Sbjct: 268 --FGSWTGGLVTSLLTGASGAIFGSKANNKPFNF--AIDAQKNDSLVKILAEPNLVTISG 323

Query: 283 QSASFTSGGQHLYKTVSSST---GATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVS 337
           Q ASF +GG+ +Y  V+ +    GA +VT  +  +GV L FTPTVL+ GRI L++  EVS
Sbjct: 324 QEASFLAGGK-IYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANGRIHLKVAPEVS 382

Query: 338 E--PVIGVNAGD-------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E  P     +G        +P    R+A TTV++  G +  + GLL+D  +   + +P  
Sbjct: 383 ELSPTGATVSGGTLAGQSVLPLITTRRASTTVQMRDGESFAIGGLLQDSARGSLKALPGA 442

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
            ++P+LG LFR++++ ++ TE+    TP LVKP+A  +   P D ++  D    +F 
Sbjct: 443 GEVPVLGTLFRSTQYQQDLTELVFIITPRLVKPMATNNYPLPTDSFTTPDPFSLYFM 499


>gi|110632971|ref|YP_673179.1| type II and III secretion system protein [Mesorhizobium sp. BNC1]
 gi|110283955|gb|ABG62014.1| type II and III secretion system protein [Chelativorans sp. BNC1]
          Length = 464

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 17/410 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V + K   I +   K + +++     ++++ DP  A +   +  + Y+ G+ +G   + L
Sbjct: 43  VSVAKDSAIRVARGKPLTVEIAEAFDEIVIGDPEIATINPLTDHSFYVLGQGLGTTGIAL 102

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
                + +   D+ +  D   L  T+R+ +  SNI+V   +  +VL G       +++A 
Sbjct: 103 YDESKRLIGTFDVEVTLDTKMLAGTIRQSVPGSNIKVTSANGRIVLSGSAPDAVAAEKAS 162

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +++  F           +  + V+N ++I    QV L V   E+ R + K++G + S   
Sbjct: 163 QIAARF-----------AGDEDVINTIDITSSQQVQLNVRFVEINRAVGKELGTKISAAY 211

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
            +SG   SF +D      +  GD     V D FS +  + ALE     R LAEP L A S
Sbjct: 212 VTSGGGISFNSDPRASSNTPAGDLIGGLVSDGFSIDVAIEALEDRGVARRLAEPNLIARS 271

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EP 339
           G++ASF +GG+     VS   GA +V+   +GV L+FTPTVLS G I L I+ EVS  + 
Sbjct: 272 GETASFLAGGEFPIP-VSEENGAVTVSYKKFGVGLNFTPTVLSDGLIALDIEPEVSSIDT 330

Query: 340 VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 G+  +P + VR+A T+++L SG + ++AGLL+   +   + +P L ++P+LGAL
Sbjct: 331 TSSYRVGNIAIPGFTVRRARTSIDLRSGQSFMMAGLLQSQNEINTQRVPGLGQLPVLGAL 390

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD-LSRPDDHYSVEDDAKAFFFN 446
           F +  + R ET++ I  TP LV P+   + ++ P D      D + F  N
Sbjct: 391 FSSKAYQRRETDLVIIVTPHLVSPIPPGNKVATPADRTKPARDGEVFLGN 440


>gi|237678812|emb|CAQ57539.1| RhcC2 protein [Bradyrhizobium elkanii]
          Length = 484

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/416 (30%), Positives = 201/416 (48%), Gaps = 27/416 (6%)

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           + V+DPT AD    S  T+++FGK  G+ ++  +  +G+ +  L +++ + I  L  TLR
Sbjct: 86  IFVADPTIADYQAPSNTTIFVFGKKSGRTSLFALNENGEALAELRVVVTQPIEDLRATLR 145

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
             + D  I V       +L G     +  + A +++E FL           +   V+N +
Sbjct: 146 AEVGDYPIHVSYTPRGAILSGTAPNAEVVETAKKVTEQFLG----------AGSLVVNKI 195

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            +AG  QV L V +AEV R  +K +    +    +S P+ +F     GK    G      
Sbjct: 196 QVAGSLQVNLSVRVAEVSRSAVKDLNIHFT----ASSPNGAFL--ISGKDGGSGAAGGGG 249

Query: 249 GVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            +   FS        VL AL        LAEP LTA+SG+SASF +GG+     +  +  
Sbjct: 250 TIGIGFSAGNTNLSAVLDALASEHLASILAEPNLTAMSGESASFLAGGEFPIPVMQDNR- 308

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTT 359
             SV    +GV L F PTVL+  +I +R++ EVSE      + +N  ++P+   R+A T 
Sbjct: 309 QVSVQFRQFGVSLEFVPTVLNNNQINVRVKPEVSELSSEGQVKINGMEVPALSTRRASTV 368

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VEL SG +  + GL++ +        P L  +PILGALFR+S F + ETE+ I  TP++V
Sbjct: 369 VELASGQSFAIGGLIRRNFNNDIGEFPWLGDVPILGALFRSSSFQKRETELVIIVTPYIV 428

Query: 420 KPVAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +P +    +S P D  +   DA     N + +    ++A         G+ GFI +
Sbjct: 429 RPGSNPSRMSAPSDRIAPPSDAGRILTNTLARPPKDRDAPRTSAPGLTGSAGFIIE 484


>gi|148557761|ref|YP_001265343.1| type II and III secretion system protein [Sphingomonas wittichii
           RW1]
 gi|148502951|gb|ABQ71205.1| type II and III secretion system protein [Sphingomonas wittichii
           RW1]
          Length = 526

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/447 (30%), Positives = 214/447 (47%), Gaps = 68/447 (15%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +SIG  ++I L  P+   D+ V+D   ADV V S   +YLFGK  G+  V      G  +
Sbjct: 51  LSIGSGQMIALSAPIS--DLFVADDKIADVQVRSTTQLYLFGKGAGETAVYATDKAGNVV 108

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            +  + +  +I  ++  L+  + ++ I    ++  V+L G V +  D + A +L E F+ 
Sbjct: 109 WSSIVRVGSNITSVDTMLKLAMPEAAITATTMNGIVLLTGTVASPSDVEEAQKLVEQFVG 168

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---- 225
           +            +V+N L  A   QV+L V IAEV R+  K IG       ++ G    
Sbjct: 169 KE----------TQVVNRLKSAVPLQVSLHVKIAEVSREFAKSIGINLLNRDTTGGFLFG 218

Query: 226 -----------------------------PSKSFAADFG---GKFVSEG----------- 242
                                        P+ S +  F    G+F++ G           
Sbjct: 219 VAQGRNFGSIGNLDTSAFPKLDASSLYGLPAGSLSLPFNPATGQFIAGGTAYTFDKLGKG 278

Query: 243 -GDFSVKGVLDRFSFETVLHALERATA---IRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            G  +  G+  +F    +  A++ A A   + TLA+P LTAISG++ASF +GG+ +   +
Sbjct: 279 AGSGTSFGLAGKFLGMDLAAAIDLAEADGLVTTLAQPNLTAISGETASFLAGGE-IPIPL 337

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVR 354
           +   GA SV    YGV L FTPTVL  GRI +R++ EVS+      + +N   +P    R
Sbjct: 338 AQGLGAVSVEFKQYGVSLSFTPTVLGDGRISIRVRPEVSQLTDAGSVRLNGFTIPGITTR 397

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +A+TTVEL SG   ++ GLL +      +  P L  +PILGALFR++ F R ETE+ I  
Sbjct: 398 RAETTVELGSGQAFMIGGLLSNAQNSNVDKAPFLGDLPILGALFRSNGFKRNETELMIVV 457

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           TP+LVKPV+ + ++ P        D +
Sbjct: 458 TPYLVKPVSPQQIALPTAGLRAATDGE 484


>gi|227326302|ref|ZP_03830326.1| hypothetical protein PcarcW_02904 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 479

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 218/418 (52%), Gaps = 30/418 (7%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++ + +N+  +L +      VLV+DP  A   + SP  ++++ K+VG   +  +  +G  
Sbjct: 55  EVRLTVNQGRLLHLNALPDSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNV 114

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETF 167
           +  + ++ E D+  L   ++R    ++I++E  +   V++ G V T QD++R ++  + +
Sbjct: 115 INAIRLVSEHDLKALGERMKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAY 174

Query: 168 LSQSG------------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           +S S             R   ++ SS KV+N L I    Q+ ++V + EV R +  ++GF
Sbjct: 175 ISASSGGGGQGGGGGGERLPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGF 234

Query: 216 QHSITGSSSGPSKSFAADFGGK---FVSEGGDFSV---KGVLD--RFSFETVLHALERAT 267
             + + S+   S +  A  G +   F +  G F+     G L+  R     +L A+ +  
Sbjct: 235 NWAASLSTG--SGNMTAGSGSRLNLFNATTGRFANPTDAGFLNFGRSRLSGLLTAMNQQG 292

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               LAEP LTA+SG++A+F +GG+     V  +  + S+    YGV+L  TPT+LS  R
Sbjct: 293 MATVLAEPNLTAMSGETAAFAAGGE--VPIVLITNNSVSIDYKSYGVILRMTPTLLSANR 350

Query: 328 IGLRIQTEVSEPV----IGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           I L I  EVSE      + +  G  +P+  VR+ADTTVEL SG +  LAG+L+    Q  
Sbjct: 351 ISLHIAPEVSELTDVGSVQLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTI 410

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
            G+P LS +P+ G LF +   ++EETE+ I AT ++V+PV   DL  P     + D +
Sbjct: 411 NGVPGLSSVPMFGRLFESESTSQEETELVIIATAYVVEPVNAGDLQTPGQGVKMLDSS 468


>gi|78357403|ref|YP_388852.1| type II/III secretion system protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219808|gb|ABB39157.1| type II/III secretion system protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 482

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 208/424 (49%), Gaps = 50/424 (11%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + +   K ++L+    V+ V V+ P  A V+V SP  +Y+ G   G   + L    G   
Sbjct: 39  VQLAAGKSVVLETASPVRRVSVAAPEVAQVLVLSPTQVYVTGVKPGGTTLTLWNAAGAVS 98

Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
              DI +  DIA L+  L + + ++ +I V  V +++ L G V +      A++++  + 
Sbjct: 99  HVFDIQVSPDIARLKEMLHKLLPSEKDIMVMTVGESITLAGTVSSPAHIATAMDMARMY- 157

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---- 224
                      +  KV NL+ + G  Q+ L+V +AE+RR +++++G   +    +S    
Sbjct: 158 -----------APDKVTNLMKVGGMHQIMLEVKVAEMRRSVMQRLGIDLAAAWGNSFAFT 206

Query: 225 ---------------GPSKSFAA---DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
                          G  ++ A    +  G F +  G  ++ G LD          L+  
Sbjct: 207 MLNQLFTLDNQDGTIGVGRTAAVLSPNNTGVFQAPVGGMTLTGFLD---------VLKEN 257

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
             ++ LAEPTL   SG+ ASF +GG+ +   V    G  ++   +YGV L FTPTVLSP 
Sbjct: 258 GLVKVLAEPTLVCRSGEHASFLAGGE-IPIPVPQGLGTVAIEFKEYGVTLDFTPTVLSPR 316

Query: 327 RIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +I L+++ EVSE     VI +N   +P    R+A TTVEL  G +  +AGLL+D++++  
Sbjct: 317 QISLKVEPEVSELDYANVIQINGFSIPGISSRRASTTVELGDGQSFAIAGLLRDEVRETI 376

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           +  P L  IP+LG LFR+S + + ETE+ I  TP L KP+ M   + P D +  E     
Sbjct: 377 KKYPGLGDIPVLGTLFRSSSWQKNETELVIIITPRLAKPLDMTAQTLPTDGFR-EPTEYE 435

Query: 443 FFFN 446
           FF  
Sbjct: 436 FFIQ 439


>gi|300692331|ref|YP_003753326.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07]
 gi|299079391|emb|CBJ52062.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07]
          Length = 644

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 218/421 (51%), Gaps = 41/421 (9%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++++ + K  ++Q+P  V++  V +P     ++ SP+T+YL G+ VG  N+I+ G  G  
Sbjct: 126 EVTVPVGKSTMVQLPEPVRNRTVGNPNVVQAMLVSPQTLYLLGQEVGTTNMIVQGRSGSC 185

Query: 109 MLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + +D+ +  D   L  TL   + D+  +RV   +D++VL G V     +Q+ V+++  F
Sbjct: 186 SV-IDVAVGADPGGLLATLHELVPDAKGVRVSAAADSLVLSGSVSDSVQAQKVVDIANAF 244

Query: 168 LSQS---------GRNQYANSS-------------SKKVMNLLNIAGEDQVTLKVTIAEV 205
           +++          G  Q ANS+             S +++N++ +    QV L+V +AEV
Sbjct: 245 VTRQTRGPSQHDQGGGQGANSATQGAITAPGAQPRSPRIINMMAVEAPQQVMLEVKVAEV 304

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            + ++ Q+G   ++  +S+  S SF A     F+S   D       +    +  L A   
Sbjct: 305 SKTLIDQMGAAFNL--NSAFGSWSFGAI--ANFLSSSQDLVSFSKANNLPLKFALDAQRG 360

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTV 322
              ++ LAEP+L AISGQ ASF +GG+       S TG  +   +    +GV L FTPTV
Sbjct: 361 DGLVKVLAEPSLMAISGQEASFLAGGKVFIPVPQSFTGGVTTIVLQEETFGVGLRFTPTV 420

Query: 323 LSPGRIGLRIQTEVSE--PV-IGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGL 373
           +  GRI L++  EVSE  P  + V A +      +P    R+A TT+++  G +  + GL
Sbjct: 421 MENGRINLKVAPEVSELSPTGVAVTAANTNGTTILPLITTRRASTTLQVRDGQSFAIGGL 480

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           +K ++    + +P + ++P++G+L R++ F R++TE+    TP LVKP+  +    P D 
Sbjct: 481 IKSNVTGSLKALPGIGELPVIGSLARSTSFQRDQTELLFVVTPRLVKPLPAQ-YPMPTDS 539

Query: 434 Y 434
           +
Sbjct: 540 F 540


>gi|220918104|ref|YP_002493408.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955958|gb|ACL66342.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 477

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/464 (29%), Positives = 229/464 (49%), Gaps = 68/464 (14%)

Query: 10  TMMSIFLFSSNPSVAKLPPIKEANAAVINIS-DVEIGKGKKISI--GLNKVIILQVPVDV 66
           T++++ LF++      LPP++ A  A+  +  D  +G G ++++  G N+++I+    ++
Sbjct: 5   TLLALALFAT-----PLPPVELAAGALPPLRIDRSVGAGSELALEAGQNRLLIISE--EI 57

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
             V V+DP+ AD+ V +   + L  K+ G  ++ L     + ++ + +++ R++  L   
Sbjct: 58  GRVAVADPSVADLKVVTTNQLLLTAKSSGTTDLTLWNRSNEPLV-IALVVTRNLEPLRKQ 116

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           ++       + +    + V+L G V  ++  +R VE+             A   +K+V N
Sbjct: 117 VKDLFPGEKVTITGAGELVILSGEVSDVRIPERLVEV-------------AKLHAKQVAN 163

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIG---FQHSI----------------------TG 221
           L+ ++G  QV L+V  AEV R  L+QIG   F  S                       TG
Sbjct: 164 LVKVSGNQQVQLEVRFAEVSRSGLRQIGVNLFHQSSNGEVVTGMTGRGIIPTDLGVPGTG 223

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           ++  P   F   F   F        V  +   F F  +L  LE+    +TLAEPTL  +S
Sbjct: 224 TAGAPPPIFRPQFNNGF-----SMFVSSLSGDFPFSAMLSLLEQNGLSKTLAEPTLVTLS 278

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--- 338
           GQ A F +GG+ L   +  S G T V    +G++L FTPTV++   I L ++ EVS+   
Sbjct: 279 GQQARFVAGGE-LPIPLGGSFGQTQVEWKKFGILLDFTPTVIAGDTIHLDLKAEVSDIDQ 337

Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
              I +    +P    R+++TT+ L  G +  +AGLL D ++   E +PLL  IPILGAL
Sbjct: 338 SLAITIGGTTIPGLTSRQSETTIRLGDGQSFAIAGLLSDRVRSQIERVPLLGSIPILGAL 397

Query: 398 FRNSRFNREETEIFIAATPFLVKPVA---------MRDLSRPDD 432
           FR++++ REE+E+ +  T  L +PVA          R+L+ P D
Sbjct: 398 FRSTQYKREESELLVVVTARLARPVAPHQLPPLPTERELNHPGD 441


>gi|328953626|ref|YP_004370960.1| type II and III secretion system protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328453950|gb|AEB09779.1| type II and III secretion system protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 503

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 142/472 (30%), Positives = 216/472 (45%), Gaps = 48/472 (10%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           F   M + L S+  +V   P +  A A +  + D ++ +  ++ +G +KV  L+    + 
Sbjct: 20  FLAAMVLILGSA--AVYSPPSVLAAQALLERVKDEDLEQVIRLRVGRSKV--LRTSFTIS 75

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            + V+DP  AD+++ S R +Y+ G   G  N+ L G   +   +  + +E D++ L+  L
Sbjct: 76  RISVADPEVADIIMISEREVYINGNAPGVTNISLWGK--RSFSSAKVTVEADVSLLKEKL 133

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
            + +    I VE   DTVVL G V      + A+ L+  F         +     KV+NL
Sbjct: 134 FKVLPKEKIAVEAAEDTVVLSGEVSGPVAQETAISLATAF---------SGGKKDKVVNL 184

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------ 235
           L+I G  QV + V +AE+ R + K++G   + +  +     +                  
Sbjct: 185 LHIGGVQQVMVAVRVAEINRSVGKEMGINFAYSNKAGNFGATLLNSLSILKNIDRNLDSV 244

Query: 236 ---GKFVSEGGDFSVK-----------GVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
              G  V+ G   S +           G+   F +      L++    R LAEP L   S
Sbjct: 245 TAPGVLVNPGVTTSSQQFSSSVNAVFGGLYGSFFWTAFFDVLKKNGLGRILAEPNLVTTS 304

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--- 338
           GQ ASF +GG+     V S  G TS+    +GV L FTPTVL   +I LRI  EVSE   
Sbjct: 305 GQEASFLAGGEFPIP-VPSGLGTTSIDYKKFGVGLVFTPTVLDNDKIALRINPEVSELDF 363

Query: 339 ---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                + VN   +P  +VR+  T VE+  G T+ +AGLL D  + +    PLL  +PILG
Sbjct: 364 SSQTTVVVNNFIVPGLKVRRTTTQVEMKDGQTLAIAGLLSDQHRNVVNKYPLLGDLPILG 423

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
            LFR+S F + ETE+ I  TP LVK         P D Y    D + +   R
Sbjct: 424 VLFRSSSFQKSETELVILVTPHLVKSQPPGPHRLPTDKYIEPTDLEFYLLGR 475


>gi|153006805|ref|YP_001381130.1| type II and III secretion system protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030378|gb|ABS28146.1| type II and III secretion system protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 490

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 141/473 (29%), Positives = 234/473 (49%), Gaps = 61/473 (12%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISI--GLNKVIILQVPVDVQD 68
           ++   L ++ P+VA+    ++A A      D E+G  +++S+  G N+++I+     +  
Sbjct: 9   LLVTLLVAAGPAVAQ----EQAQATPALRIDREMGAAREMSLEAGQNRLLIISE--QIAR 62

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           + V++P  AD+ V +P  + L  K VG  ++ L   D  Q L + + + R++  L   ++
Sbjct: 63  IAVANPDVADLKVVTPTQVLLTAKGVGTTDLTLWNRD-NQPLVIALQVGRNLEALRTQVK 121

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
           +     N+++    D VVL G V  ++  +R  E+             A   ++KV NL+
Sbjct: 122 QLFPGENVKITASGDLVVLSGEVTDVRLPERVAEV-------------ARLHAEKVANLI 168

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIG---FQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
            ++G  QV L+V  AEV R  L+++G   F  S    + G   S      G+F++   + 
Sbjct: 169 QVSGVQQVQLQVRFAEVARGGLRELGVNLFHKSDDFRTVGGLFS-NRTLPGEFLNTNQNP 227

Query: 246 SVKGV-----------------------------LDRFSFETVLHALERATAIRTLAEPT 276
           S+ G                              +D F F  +L  LE+    ++LAEPT
Sbjct: 228 SIPGTGPRGLAGNGFPPDVPAPAFQNAFSVFLSRMDDFPFSVMLSLLEQNNLAKSLAEPT 287

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L A+SGQ A F +GG+ L   ++SS G TSV    +G+ L FTPTV+    I L ++TEV
Sbjct: 288 LVALSGQGARFLAGGE-LPIPLASSFGQTSVEWKRFGIQLEFTPTVIGDA-IHLTMKTEV 345

Query: 337 SE--PVIGVN-AG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           S+  P + V  AG  +P    R+++T++ L  G +  +AGL+ D I+     +P +  IP
Sbjct: 346 SDIDPSLAVTIAGTSVPGLTSRQSETSIRLADGQSFAIAGLVSDRIRSQVAKVPFIGSIP 405

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           ILGALFR+  F R+E+E+ +  T  LVKPVA  +L      Y + D     F+
Sbjct: 406 ILGALFRSQAFQRDESELIVVVTAHLVKPVAPHELPPLPTEYEMNDPGDLPFY 458


>gi|218887827|ref|YP_002437148.1| type II and III secretion system protein [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218758781|gb|ACL09680.1| type II and III secretion system protein [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 493

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/414 (30%), Positives = 206/414 (49%), Gaps = 53/414 (12%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + + K ++++       V +SD   A VVV SP+ +Y+ GK  G A + L    G   
Sbjct: 47  VPLAVGKSMVVRTAQPAARVSMSDEAIAGVVVLSPQQVYVTGKKAGGATLTLWNGAGAIT 106

Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
              DI +  D+A L+  L R + D  +I V  V +++ L G VR+      A+++++ + 
Sbjct: 107 QVYDIQVTPDLAQLKEMLHRVLPDEKDIMVMAVGESITLAGTVRSAAGMTTALDVAKMY- 165

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF------------- 215
                      +  KV NL+ + G  QV L+V +AE+R+ +L+++G              
Sbjct: 166 -----------APDKVTNLMQVGGVHQVLLEVKVAEMRKSVLERLGIDLTYAWNNDFAFG 214

Query: 216 ----------QHSITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
                     Q  + G   GP+ +  + +  G F +  G  S+ G LD          L+
Sbjct: 215 MLNQLFTLDSQKGVVGV--GPTGAVVSPNVTGMFRATSGRASLMGFLD---------VLK 263

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           +   ++ LAEPTL   SG++A F +GG+ +   V    G  ++    YGV L FTPTV+S
Sbjct: 264 QNGLVKVLAEPTLICRSGENADFLAGGE-IPIPVPQGLGTVAIEFKKYGVTLGFTPTVVS 322

Query: 325 PGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
              I +R+  EVSE     VI +N   +P+   R+A TTVEL  G +  +AGLL+D++++
Sbjct: 323 DKLISMRVSPEVSELDYSNVIEINGFTIPAISTRRAATTVELADGQSFAVAGLLRDEVRE 382

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
             +  P+L  +P+LG LFR+S + + ETE+ I  TP L KP+       P D +
Sbjct: 383 NIKKYPVLGDVPLLGTLFRSSNWQKNETELVIIVTPRLAKPLDGATAKLPTDGF 436


>gi|296156489|ref|ZP_06839327.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
 gi|295893088|gb|EFG72868.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
          Length = 599

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 219/435 (50%), Gaps = 47/435 (10%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           ++I + K  ++ V   V+   V +P+    ++ SP+T+YL G +VG  N+I+ G  G   
Sbjct: 119 VTIPVGKSAMVDVREPVKSRTVGNPSIVQAMLVSPQTLYLLGSDVGTTNMIVQGRSGSCT 178

Query: 110 LNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +D+ +  D   L+ TL   +  ++ I+V+  +DT+VL G V     + R +EL+  F+
Sbjct: 179 I-IDVSVGADPGGLQQTLAALMPEETGIQVKAAADTLVLTGTVSDAVKADRVLELARAFV 237

Query: 169 S------QSG--------------------RNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
           +      Q G                          +  ++++N++++A   QV L+V +
Sbjct: 238 ARPTTALQGGAPMGSGPLPVGAAPRAMGMPAPSLGGAGGERIINMMHVAAPQQVMLEVKV 297

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
           AEV + ++ Q+G   +I G     S    AD    ++S G         +    +  + A
Sbjct: 298 AEVSKTLIDQLGVAANINGGIGSWSFGLLAD----YLSGGLSALTASKANNSPLKAAIDA 353

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----THDYGVVLHF 318
            +    ++ LAEP L AISGQ ASF +GG+ +Y  V  S G+   T       YGV L F
Sbjct: 354 QKTDQLVKILAEPNLMAISGQEASFLAGGK-VYIPVPQSNGSGGTTIVLQEEQYGVGLTF 412

Query: 319 TPTVLSPGRIGLRIQTEVSE---PVIGVNAGD------MPSYRVRKADTTVELPSGGTIV 369
           TPTVL  GRI L++  EVSE     + V+AG+      +P    R+A TT+++  G +  
Sbjct: 413 TPTVLEGGRINLKVSPEVSELSSTGVVVSAGNSNTTSILPLITTRRASTTLQVFDGQSFA 472

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + GLLK ++    +G+P  +++P+LGALFR++ + +++TE+    TP L KP+  +    
Sbjct: 473 IGGLLKSNVTGSIKGLPGAAELPVLGALFRSTSYEQDKTELVFVVTPRLAKPLP-QHYPL 531

Query: 430 PDDHYSVEDDAKAFF 444
           P D++    +A  + 
Sbjct: 532 PTDNFGDASEANVYL 546


>gi|149912019|ref|ZP_01900613.1| putative membrane protein [Moritella sp. PE36]
 gi|149804918|gb|EDM64952.1| putative membrane protein [Moritella sp. PE36]
          Length = 473

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 127/420 (30%), Positives = 209/420 (49%), Gaps = 48/420 (11%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
           + + + + LNK  ++++P   + + ++  + AD    +   + +FGK  G  ++ ++   
Sbjct: 24  QAQTLDVVLNKARLIELPKTAKSIFIASSSIADYQTLTNTKIMVFGKKTGSTSLYVLDAK 83

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
              + +  + +  ++  L   + +   D+    E  +  + L G V T   +++ V LSE
Sbjct: 84  ENVIYSATVKVSHNVTELNELIHKEFPDAIFNAESTAGKLFLKGQVPTPSMAEKIVRLSE 143

Query: 166 TFLS-----------QSGRNQ---------YANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            ++S           QSG  Q          +N  + +++N L +   +QV L++ IAEV
Sbjct: 144 GYVSTLASTESSDSQQSGNAQSSTQPTQPAASNVDNDELINQLQVTMPNQVNLRIRIAEV 203

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKF----VSEGGDFSVKGVLDRFSFETVLH 261
            R +  ++G +    G  +G + +F  ++GGK      +   D SV           ++ 
Sbjct: 204 SRKVSNKLGIKWGSQGFGTG-TFAFLDNYGGKLGGVNPASWADLSV-----------IVD 251

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL     +  LAEP LTA+SG+ ASF  GG+     V S T   +V    +GV L F PT
Sbjct: 252 ALATNGMMSVLAEPNLTAMSGEEASFLVGGEIPIPLVYSDTA--TVEYKTFGVRLDFKPT 309

Query: 322 VLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           VLS  RI L++ TEVS      N        +   P++  R+A TT+EL SG +  L GL
Sbjct: 310 VLSANRISLKVATEVSTVSSETNVQIGGTQGSSSFPTFVTRRASTTIELASGQSFALGGL 369

Query: 374 LKD-DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L+  DI+QL++ +PLL  IP+LGALFR++ F REETE+ I AT +LV+P     L  P D
Sbjct: 370 LQSKDIEQLQK-MPLLGDIPVLGALFRSNEFQREETELIIIATAYLVQPTRADILPLPTD 428


>gi|292491519|ref|YP_003526958.1| type II and III secretion system protein [Nitrosococcus halophilus
           Nc4]
 gi|291580114|gb|ADE14571.1| type II and III secretion system protein [Nitrosococcus halophilus
           Nc4]
          Length = 565

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 141/519 (27%), Positives = 237/519 (45%), Gaps = 91/519 (17%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           FF++ S+ L  ++P    L P +  N  +I  SD+E        + L K  ++++    +
Sbjct: 31  FFSLTSLALAQTSP----LTPRQSEN--LIIQSDIE----GDFQVPLYKSGVIELEERAK 80

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            + V +P  AD+++   R +Y+ GK +G  NV++   + +   + +I +  D+  L+  L
Sbjct: 81  RISVGNPGIADILMLHSRQLYVVGKALGTTNVVVWDKNERVFASFNIEVVHDLDTLKRKL 140

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ----------------- 170
            R +    I V    + ++L G V ++   + A +L++ FL +                 
Sbjct: 141 HRLLPGEVIEVHSAQERIILSGQVSSVVKMKAAEDLAQGFLPECISAESNVLVRDTTQGT 200

Query: 171 -------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
                        SG NQ        V+NL+ + G  QV L++ +AE+ R +LK+     
Sbjct: 201 PIIIQQGDGGRGASGANQEG-CKKGSVVNLMQVGGAHQVMLEIKVAEIARTVLKRFDSNF 259

Query: 218 SITGSSSGPSKSFAADFGG-----KFVSEGGDFSVKGVLD-------------------- 252
           ++  S   P K F A+ GG          G +  + G L+                    
Sbjct: 260 NVF-SFDSPWK-FGANSGGASFPNALTPSGNEVPILGSLNGEDSPIGPVVDLFQPNTPGI 317

Query: 253 ------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                       +F  E VL A  +    + LAEPTLT ++GQ A F SGG+       S
Sbjct: 318 QDKGVFLSYLSSKFFLEAVLEASRQKGLAKVLAEPTLTTLTGQEAQFVSGGEFPIPVPQS 377

Query: 301 S-TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PV-IGVNAGD----MP 349
             TG  ++   ++GV+++F P VL  GRI L++   VSE     PV +GV   +    +P
Sbjct: 378 GITGNVTIEFKEFGVIVNFLPLVLDSGRINLKLNVAVSELSQDVPVTLGVQGTENTFVIP 437

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           S   R A  TVEL  G TI +AGL+ D++++L   +P L  +PILGALFR+  F   +TE
Sbjct: 438 SLTKRSAKATVELADGQTIGIAGLINDNLRELVTKLPGLGDVPILGALFRSQEFMSGQTE 497

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
           + +  TP L +P++ + +  P D +    D + +   R+
Sbjct: 498 LVMFVTPHLARPISPQQVKLPTDSFVPPTDLEFYLMGRM 536


>gi|254510970|ref|ZP_05123037.1| bacterial type II/III secretion system protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221534681|gb|EEE37669.1| bacterial type II/III secretion system protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 476

 Score =  176 bits (446), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 128/463 (27%), Positives = 218/463 (47%), Gaps = 34/463 (7%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
           PI +A A   N+  V+ G  + + + +N+ I+++      D+ +++   AD+   S RT+
Sbjct: 28  PIGDA-AWAQNLRVVKKGTAESLDVPVNRAIVVESEQPFADISIANAGIADISTLSDRTI 86

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
           Y+ G+  G   + +    G  + N+ + +  D+   +  LR+ + +  I V   +D +VL
Sbjct: 87  YVLGRAPGITTLTMFDGAGNLITNVRVRVSPDVTEFKERLRQILPNEQIEVRTANDGIVL 146

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V +     RA+EL+E +            + ++V NLLN+ G  QV LKV  AE+ R
Sbjct: 147 SGTVSSSARLARALELAERY------------APERVSNLLNVGGVQQVMLKVRFAEMNR 194

Query: 208 DILKQIG-----------FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFS 255
            + K +               +   +    + + A +    FV       + G       
Sbjct: 195 SVAKNLSASLGFGGGDATGGFNSLNNQGALNNALANNI--PFVQTNSGAVLFGFGAGSTQ 252

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
              +L ALE    +R+LAEP L+A+SGQ A F +GG+ +   V    G  ++    +GV 
Sbjct: 253 VRLLLEALETKGLVRSLAEPNLSALSGQEAEFLAGGE-VPIPVPQGDGVVAIEYRQFGVQ 311

Query: 316 LHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           L F P V+    I L +   VS         +N   +PS+  R+  TT+EL  G +  +A
Sbjct: 312 LLFVPRVVDGNLINLELGASVSSIDQSSDFTINGDSVPSFITRQTRTTIELRDGESFAIA 371

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL++DD   L   +P L  +P+LGALFR++++ RE++E+ I  T  LV P     L+ P 
Sbjct: 372 GLIQDDFTDLNTQVPWLGDVPVLGALFRSAQYQREQSELIIIITAHLVSPTRGEALALPT 431

Query: 432 DHYSVEDDAKAFFFNRVNKI--YGPKEASEVEGQNYKGAIGFI 472
           D      +   F   +V +    G   ASEV  Q++  + G++
Sbjct: 432 DRVKPPSEFDLFVNGKVARTERAGNGAASEVAKQDFGTSYGYV 474


>gi|254229332|ref|ZP_04922749.1| putative phospholipid-binding domain family [Vibrio sp. Ex25]
 gi|262393417|ref|YP_003285271.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio sp. Ex25]
 gi|151938140|gb|EDN56981.1| putative phospholipid-binding domain family [Vibrio sp. Ex25]
 gi|262337011|gb|ACY50806.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio sp. Ex25]
          Length = 487

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 216/452 (47%), Gaps = 62/452 (13%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
           ++++   +  GK +++  ++   L +    + V + DP   D++V     ++L GK +G 
Sbjct: 16  LSVNAATVQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNELFLIGKKLGT 75

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            NV +    G+ +   ++ +  D+  L+  L +F+ D NI V    + VVL G+V + Q+
Sbjct: 76  TNVSVWDRRGRLIEQFNVEVTHDLNTLKSKLYQFLPDENIEVHSAQEKVVLRGLVSSQQN 135

Query: 157 SQRAVELSETF-LSQSGRNQYANSSSKKVM--NLLNIAGEDQVTLKVTIAEVRRDILKQI 213
              AV+++ETF L ++   +  +S     M  NLL+I G  QVTL+VT+AEV+R ++++ 
Sbjct: 136 MDTAVKIAETFALGEAADEEDDSSKDDDSMVINLLSIGGAQQVTLEVTVAEVQRTLVRR- 194

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-----------------------GV 250
                           F ++F   F    GDF+                         G 
Sbjct: 195 ----------------FDSNF--HFFQRSGDFTWGGTTAGGGIDGIGPILNVPTVEDFGF 236

Query: 251 LDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           L  F      F   L   ++    + LAEP+LTA+SG  A F +GG+  +     +    
Sbjct: 237 LGSFIDSNTLFTFALDVAKQNGVAKVLAEPSLTALSGTQAEFVAGGE--FPIPVPNEDGI 294

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD------MPSYRVRK 355
           ++   +YGV L F P +LS  RI L++   VSE     V+  N  +      +P    R 
Sbjct: 295 TIDYKEYGVQLDFVPFILSDKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRS 354

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A TT+EL  G TI +AGLL ++ + + +GIP  S +P+LG LF++  F   ETE+ I  T
Sbjct: 355 AGTTIELADGQTIGIAGLLSENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVT 414

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           P L  P+  R ++ P D +   +D + +   +
Sbjct: 415 PRLATPIDRRRITLPTDGFVAPNDVEFYLLGK 446


>gi|332162954|ref|YP_004299531.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325667184|gb|ADZ43828.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 410

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/389 (30%), Positives = 199/389 (51%), Gaps = 31/389 (7%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +++   ++  V VS    AD  +    ++ ++ K  G A  IL   +   +    IL++ 
Sbjct: 1   MIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDN 60

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ-------RAVELSETFLSQS 171
            I      +R    +S+I +  + D+ +L G V T +  +        A+   +T  S S
Sbjct: 61  TITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIGSEKTIASNS 120

Query: 172 -----GRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
                G NQY NS    +V+N + + G +QV +K+TIAEV +D  + IG   S  G+ SG
Sbjct: 121 KKDSDGNNQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSG 180

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
             + F  +   KF ++G                ++HA+   +  R LAEP L+ +SG+SA
Sbjct: 181 SFQFFKLNGSNKFNAKG-------------ISALVHAINDDSIARVLAEPNLSVLSGESA 227

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGV 343
           SF  GG+     V+++  +T +T   +G+ L+    V +  RI +++  EVS  + V  +
Sbjct: 228 SFLVGGE--LPLVNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNI 285

Query: 344 NAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           + GD  PS+R RKA TT+EL  G + +L GL+    ++  + IP +  IPILGA FRN+ 
Sbjct: 286 DGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFRNAE 345

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPD 431
             + +TE+ + AT  LV+PV+ +++  P+
Sbjct: 346 TRKNQTELVVVATVNLVRPVSEKEVELPN 374


>gi|269966892|ref|ZP_06180965.1| Flp pilus assembly protein [Vibrio alginolyticus 40B]
 gi|269828559|gb|EEZ82820.1| Flp pilus assembly protein [Vibrio alginolyticus 40B]
          Length = 487

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 212/442 (47%), Gaps = 62/442 (14%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           GK +++  ++   L +    + V + DP   D++V     ++L GK +G  NV +    G
Sbjct: 26  GKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNELFLIGKKLGTTNVSVWDRRG 85

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +   ++ +  D+  L+  L +F+ D NI V    + VVL G+V + Q+   AV+++ET
Sbjct: 86  RLIEQFNVEVTHDLNTLKSKLYQFLPDENIEVHSAQEKVVLRGLVSSQQNMDTAVKIAET 145

Query: 167 F-LSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           F L ++   +  +S   +  V+NLL+I G  QVTL+VT+AEV+R ++++           
Sbjct: 146 FALGEAADEEDDSSKDDESMVINLLSIGGAQQVTLEVTVAEVQRTLVRR----------- 194

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVK-----------------------GVLDRF-----S 255
                 F ++F   F    GDF+                         G L  F      
Sbjct: 195 ------FDSNF--HFFQRSGDFTWGGTTAGGGIDGIGPILNVPTVEDFGFLGSFIDSNTL 246

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L   ++    + LAEP+LTA+SG  A F +GG+  +     +    ++   +YGV 
Sbjct: 247 FTFALDVAKQNGVAKVLAEPSLTALSGTQAEFVAGGE--FPIPVPNEDGITIDYKEYGVQ 304

Query: 316 LHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSG 365
           L F P +LS  RI L++   VSE     V+  N  +      +P    R A TT+EL  G
Sbjct: 305 LDFVPFILSDKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADG 364

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            TI +AGLL ++ + +  GIP  S +P+LG LF++  F   ETE+ I  TP L  P+  R
Sbjct: 365 QTIGIAGLLSENARNVANGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRR 424

Query: 426 DLSRPDDHYSVEDDAKAFFFNR 447
            ++ P D +   +D + +   +
Sbjct: 425 RITLPTDGFVAPNDVEFYLLGK 446


>gi|167584957|ref|ZP_02377345.1| type II and III secretion system protein [Burkholderia ubonensis
           Bu]
          Length = 536

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 213/408 (52%), Gaps = 19/408 (4%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+ G  G   
Sbjct: 89  VSVPLGKSMLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQGKSGACR 148

Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +D+ +  D   L+ +L + +  + +I V   +DT+VL G V + Q +Q+A  +++ + 
Sbjct: 149 I-IDVAVGADAGGLQASLGQLMPGERDIHVSTAADTIVLAGNVSSAQAAQQAAAIAKAYA 207

Query: 169 SQSGRNQYANSSSK-KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
           +  G     ++     V+N+L +    QV L+V +AEV + ++ Q+G   +I G     S
Sbjct: 208 NAGGGGANGDNKGGGTVLNMLTVTAPQQVMLEVKVAEVSKTLINQLGSAFNIQGGFGSWS 267

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            +  ++      S  G  + K   +   F   + A      ++ LAEP L  ISGQ A+F
Sbjct: 268 GALVSNLLAGVAS--GIVANKA--NNRPFSVAVDAQNTDNLVKILAEPNLVTISGQEATF 323

Query: 288 TSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGV 343
            +GG+       S+TG  +  T    ++GV L F PTVLS GRI L++  EVSE    GV
Sbjct: 324 LAGGKIFIPVPQSNTGGGTTITLQEEEFGVALRFLPTVLSNGRISLKVAPEVSELSQTGV 383

Query: 344 --------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                    A  +P    R+A TTV++  G +  + GL+KD+     + +P + +IP+LG
Sbjct: 384 TLTATNVAGASILPLITTRRASTTVQMADGESFAIGGLIKDNATGSLKAVPGIGEIPVLG 443

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           AL R++ F ++ TE+    TP LVKP+   D+  P D ++  ++   F
Sbjct: 444 ALARSTSFQQDRTELIFIITPHLVKPLQTADVPLPTDSFTRTNEVDVF 491


>gi|294140774|ref|YP_003556752.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
 gi|293327243|dbj|BAJ01974.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
          Length = 484

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 210/416 (50%), Gaps = 20/416 (4%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           IL +   V  V V +P   D+ +     +Y+ GK +G  N+++   + + +  +DI I  
Sbjct: 49  ILNLKQTVHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIMIWDENERLVDVIDIEITH 108

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D+  L++ L  F+    + V+     +++ G    +Q    AVEL++ +   +  ++  N
Sbjct: 109 DLNGLKLRLHEFLPGEKLGVQTSQGHLLISGQASNLQKMNTAVELAKAYADAASVSK-VN 167

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S+   V+N++ + G+ QV L+V IAEV+R++ +Q   +  I G  S  S   A       
Sbjct: 168 ST---VLNMMTVGGDHQVMLEVVIAEVQREVARQFDSKFFIFGQGSKLSGGTAGGGATFD 224

Query: 239 VSEGGDFSVKGVLDRFSFETVL--HALERATA---IRTLAEPTLTAISGQSASFTSGGQH 293
           +      S +G   R+  + +L   AL+ A      + LAEP +TA+SGQSA F SGG+ 
Sbjct: 225 LDPAAAISNRGFFARYINDNLLMNFALDVAKQNGLAKVLAEPNVTALSGQSAEFLSGGEF 284

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD-- 347
               V  + G+T++   D+GV + F PTVL  G+I L +   VSE      + ++ G   
Sbjct: 285 PIP-VPGTNGSTTIQYRDFGVGVRFVPTVLDSGQINLNLNVIVSEVSNANSVSLSGGGSN 343

Query: 348 ----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +PS   R   TTVEL  G TI ++GL+ D +++  + +P L  IPILG LF +  F
Sbjct: 344 ATLIVPSIVKRTTSTTVELADGQTIAISGLINDTLRENIDKLPGLGDIPILGQLFTSKSF 403

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
              ++E+ I  TP LV+P   + +S P D + +  D + +   +++      E SE
Sbjct: 404 KSGQSELIILVTPRLVRPFNRKHISLPTDDFVLPSDMEFYLLGKMSHKKQDSERSE 459


>gi|227114876|ref|ZP_03828532.1| hypothetical protein PcarbP_18025 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 479

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 126/408 (30%), Positives = 212/408 (51%), Gaps = 30/408 (7%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +LQ+      VLV+DP  A   + SP  ++++ K+VG   +  +  +G  +  + ++ E 
Sbjct: 65  LLQLNELPDSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEH 124

Query: 119 DIAHLEMTLRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------ 171
           D+  L   ++R    ++I++E  +   V++ G V T QD++R ++  +T++  S      
Sbjct: 125 DLKALGERMKREFPGADIQLEPSIPSGVIVRGSVDTPQDAKRVIDSIQTYIKSSVGGGQG 184

Query: 172 ------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
                  R   ++ +S  V+N L I    Q+ ++V + EV R +  ++GF  + + S+  
Sbjct: 185 GGGGGGERLPGSSETSGNVVNQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTG- 243

Query: 226 PSKSFAADFGGK---FVSEGGDFSV---KGVLD--RFSFETVLHALERATAIRTLAEPTL 277
            S +  A  G +   F +  G F+     G L+  R     +L A+ +      LAEP L
Sbjct: 244 -SGNMTAGSGSRLNLFNATTGRFANPTDAGFLNFGRSRLSGLLTAMNQQGMATVLAEPNL 302

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TA+SG++A+F +GG+     V  +  + S+    YGV+L  TPT+LS  RI L I  EVS
Sbjct: 303 TAMSGETAAFAAGGE--VPIVLITNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVS 360

Query: 338 EPV----IGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           E      + +  G  +P+  VR+ADTTVEL SG +  LAG+L+    Q   G+P LS +P
Sbjct: 361 ELTDVGSVQLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVP 420

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           + G LF +   ++EETE+ I AT ++V+PV   DL  P     + D +
Sbjct: 421 MFGRLFESEATSQEETELVIIATAYVVEPVNAGDLQTPGQGVKMLDSS 468


>gi|85707702|ref|ZP_01038768.1| type II secretion system protein [Erythrobacter sp. NAP1]
 gi|85689236|gb|EAQ29239.1| type II secretion system protein [Erythrobacter sp. NAP1]
          Length = 576

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/456 (30%), Positives = 218/456 (47%), Gaps = 69/456 (15%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           ISIG  +++  QVP  + DV V++   ADV + S R +Y+FG++ G+  +      G+ +
Sbjct: 70  ISIGRGELV--QVPGTMTDVFVANENVADVQIKSQRQLYVFGRSGGETTIYASDARGEVI 127

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFL 168
            + ++ +  +I  ++  L   + ++ + V  M ++TV+L G V   +D+  A  L   FL
Sbjct: 128 FSANVRVGSNIGSIDQMLALAMPEAQVNVATMGTNTVLLTGTVAAPEDAAEAERLVTAFL 187

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI--------------- 213
            +             V+  L  A   QV L+V  AEV R +++ +               
Sbjct: 188 GEQ----------ANVITRLKTATPLQVNLQVKFAEVSRSLVRAVSGNLTTFDASTGGFR 237

Query: 214 -------------------------GFQHSITGSSSGPSKSFA-ADFGGK---FVSEGGD 244
                                    G Q+ + G    P+      D  G    F   G D
Sbjct: 238 GAVGTGRTLGAGEFDFRNGPLGVGSGVQNPVVGPFIDPTTGLPILDANGNPLTFTGPGID 297

Query: 245 FSVKGV----LDRFSFETVLHAL---ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
               G     L R      L AL   ER   I T+++P LTA+SG++A+F +GG+     
Sbjct: 298 SGTAGTTIAGLGRLFGLDALGALDLSERLGLITTISQPNLTALSGETATFLAGGEFPIP- 356

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRV 353
           +S   G  ++   ++GV L +TPTVLS GRI +R++ EVSE      + +N   +P+  +
Sbjct: 357 ISQGLGNVAIEYRNFGVSLAYTPTVLSNGRISIRVRPEVSELSSQGAVTLNGFQVPALTI 416

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+ +TTVEL SG + ++AGLL ++ Q   +  P L  +PILG LFR+  F R ETE+ I 
Sbjct: 417 RRTETTVELGSGQSFMIAGLLSNNAQNALDKAPGLGDVPILGNLFRSRDFRRGETELVIV 476

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
            TP+LVKPV   D++ P D Y   ++ + F   R N
Sbjct: 477 VTPYLVKPVNASDIALPTDGYHSANELEQFIGFRDN 512


>gi|207728106|ref|YP_002256500.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           MolK2]
 gi|206591351|emb|CAQ56963.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           MolK2]
          Length = 626

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 220/433 (50%), Gaps = 44/433 (10%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++++ + K  ++Q+P  V++  V +P     ++ SP+T+YL G+ VG  N+I+ G  G  
Sbjct: 99  EVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVSPQTLYLLGQEVGTTNMIVQGRSGSC 158

Query: 109 MLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + +D+ +  D   L+ TLR  +  + N++V   +D++VL G V     +Q+ ++++  F
Sbjct: 159 SV-IDVSVGADPGGLQSTLRTLMPGAKNVQVSAAADSLVLGGSVSDSVQAQKVLDIANAF 217

Query: 168 LSQSGRNQY----------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           + +  R                         A   S +++N++ +    QV L+V +AEV
Sbjct: 218 VMRQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPRSPRIINMMAVEAPQQVMLEVKVAEV 277

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            + ++ Q+G   ++ G+    S +F A     F+S   D       +    +  L A + 
Sbjct: 278 SKTLIDQMGSALNVNGAFG--SWTFGAL--ANFLSGSNDIVNFSKNNHLPLKFALDAQKG 333

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTP 320
              ++ LAEP+L AISGQ ASF +GG+ ++  VS       V T       +GV L FTP
Sbjct: 334 DGLVKVLAEPSLMAISGQEASFLAGGK-VFIPVSQGAATNGVATIILQEETFGVGLRFTP 392

Query: 321 TVLSPGRIGLRIQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLA 371
           TV+  GRI L++  EVSE       V   N+ +   +P    R+A TT+++  G +  + 
Sbjct: 393 TVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSILPLITTRRASTTLQVHDGQSFAIG 452

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K+++    + IP + ++P++GAL R++ F +++TE+    TP LVKP+  +    P 
Sbjct: 453 GLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQTELVFVVTPHLVKPLPAQ-YPLPT 511

Query: 432 DHYSVEDDAKAFF 444
           D +   + A+ F 
Sbjct: 512 DSFGRANPAEIFL 524


>gi|318604223|emb|CBY25721.1| type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 410

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 198/389 (50%), Gaps = 31/389 (7%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +++   ++  V VS    AD  +    ++ ++ K  G A  IL   +   +    IL++ 
Sbjct: 1   MIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDN 60

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ-------RAVELSETFLSQS 171
            I      +R    +S+I +  + D+ +L G V T +  +        A+   +T  S S
Sbjct: 61  TITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIGSEKTIASNS 120

Query: 172 -----GRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
                G NQY NS    +V+N + + G +QV +K+TIAEV +D  + IG   S  G+ SG
Sbjct: 121 KKDSDGNNQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSG 180

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
             + F  +   KF ++G                ++HA+   +  R LAEP L+ +SG+SA
Sbjct: 181 SFQFFKLNGSNKFNAKG-------------ISALVHAINDGSIARVLAEPNLSVLSGESA 227

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGV 343
           SF  GG+     V+++  +T +T   +G+ L+    V +  RI +++  EVS  + V  +
Sbjct: 228 SFLVGGE--LPLVNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNI 285

Query: 344 NAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           + GD  PS+R RKA TT+EL  G + +L GL+    ++  + IP +  IPILGA F N+ 
Sbjct: 286 DGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFSNAE 345

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPD 431
             + +TE+ + AT  LV+PV+ +++  P+
Sbjct: 346 TRKNQTELVVVATVNLVRPVSEKEVELPN 374


>gi|260463894|ref|ZP_05812090.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259030269|gb|EEW31549.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 481

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/420 (31%), Positives = 211/420 (50%), Gaps = 40/420 (9%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           K++ G  K II         +++ DP  A+V   + ++ Y+ G N+G   + L   D KQ
Sbjct: 55  KVAKGKPKTIITSAAF--YQIVIGDPEIANVNPLTDKSFYVLGNNLGTTGIALF-DDKKQ 111

Query: 109 ML-NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           ++  +DI +  D   L  T+R  + D+ I+V   +  VVL G       +++A +++  F
Sbjct: 112 LVGTVDIEVTLDTDELANTIRASVPDAKIKVGSANGRVVLSGEADDAVAAEKANKIATRF 171

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                      S +++V+N +NI+   QV L V   E+ R   + +G ++         S
Sbjct: 172 -----------SGNEEVINSVNISSSQQVQLNVRFVEINRQAGQDLGAKY---------S 211

Query: 228 KSFAADFGGKFVS-EGGDFSVKG---VLDRF-----SFETVLHALERATAIRTLAEPTLT 278
            +FA  FGG+ VS E G     G   ++ R      S +  + ALE     R LAEP L 
Sbjct: 212 ANFAYGFGGRDVSLEPGTVPAAGTGEIIGRLLSNGVSIDIAIKALEERGLARRLAEPNLI 271

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS- 337
           A SG++ASF +GG+     VS   G  SV+   YGV L F PTVL  G + L I  EVS 
Sbjct: 272 ARSGETASFLAGGEFPIP-VSEENGKISVSYKKYGVSLDFKPTVLKDGLVSLDIAPEVSS 330

Query: 338 -EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            +     N G++  P + VR+A T+V+L +G + ++AGLL+         IP L K+P+L
Sbjct: 331 IDASASYNIGNISVPGFIVRRARTSVDLKNGQSFMIAGLLQSQNDITTSRIPGLGKMPVL 390

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           GALF +  + R ET++ I  TP+LVKPV   + ++ P +      +A  +F N   ++ G
Sbjct: 391 GALFSSKSYQRRETDLVIIVTPYLVKPVDPSKKMAEPTNGTQPASNAD-YFLNNTEEVKG 449


>gi|207744158|ref|YP_002260550.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           IPO1609]
 gi|206595562|emb|CAQ62489.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           IPO1609]
          Length = 626

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 219/433 (50%), Gaps = 44/433 (10%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++++ + K  ++Q+P  V++  V +P     ++ SP+T+YL G+ VG  N+I+ G  G  
Sbjct: 99  EVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVSPQTLYLLGQEVGTTNMIVQGRSGSC 158

Query: 109 MLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + +D+ +  D   L+ TLR  +  + N++V   +D++VL G V     +Q+ ++++  F
Sbjct: 159 SV-IDVSVGADPGGLQSTLRTLMPGAKNVQVSAAADSLVLGGSVSDSVQAQKVLDIANAF 217

Query: 168 LSQSGRNQY----------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           +    R                         A   S +++N++ +    QV L+V +AEV
Sbjct: 218 VMHQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPRSPRIINMMAVEAPQQVMLEVKVAEV 277

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            + ++ Q+G   ++ G+    S +F A     F+S   D       +    +  L A + 
Sbjct: 278 SKTLIDQMGSALNVNGAFG--SWTFGAL--ANFLSGSNDIVNFSKNNHLPLKFALDAQKG 333

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTP 320
              ++ LAEP+L AISGQ ASF +GG+ ++  VS       V T       +GV L FTP
Sbjct: 334 DGLVKVLAEPSLMAISGQEASFLAGGK-VFIPVSQGAATNGVATIILQEETFGVGLRFTP 392

Query: 321 TVLSPGRIGLRIQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLA 371
           TV+  GRI L++  EVSE       V   N+ +   +P    R+A TT+++  G +  + 
Sbjct: 393 TVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSILPLITTRRASTTLQVHDGQSFAIG 452

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K+++    + IP + ++P++GAL R++ F +++TE+    TP LVKP+  +    P 
Sbjct: 453 GLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQTELVFVVTPHLVKPLPAQ-YPLPT 511

Query: 432 DHYSVEDDAKAFF 444
           D +   + A+ F 
Sbjct: 512 DSFGRANPAEIFL 524


>gi|299067807|emb|CBJ39018.1| pilus assembly secretion protein [Ralstonia solanacearum CMR15]
          Length = 635

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 131/442 (29%), Positives = 231/442 (52%), Gaps = 54/442 (12%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++++ + K  ++Q+   V+   V +P     ++ SP+T+YL G++VG  N+I+ G  G  
Sbjct: 97  EVTVPVGKSTMVQLSEPVRSRTVGNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSC 156

Query: 109 MLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + +D+ +  D   L+ TL   + + S +RV   +D++VL G V     +Q+ ++++  F
Sbjct: 157 SV-IDVSVGADPGGLQATLHALMPEASRVRVSAAADSLVLGGTVSDSVQAQKIMDIANAF 215

Query: 168 L-------SQSGR--------------NQYANSSS----------KKVMNLLNIAGEDQV 196
           +       +QSG+                 A +SS           +++N++++    QV
Sbjct: 216 VMRETRGPAQSGQAGTMGMQGMTAMSTGNAATASSGSGSGEAVRNPRIINMMSVEAPQQV 275

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-FSVKGVLDRFS 255
            L+V +AEV + ++ Q+G   ++ GS    S +F A     F+S   D FSV    ++  
Sbjct: 276 MLEVKVAEVSKTLINQMGAALNLNGSFG--SWTFGAL--ANFLSGAPDIFSVDKA-NKLP 330

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHD-- 311
           F+  L A +    ++ LAEP L AISGQ ASF +GG+ +Y  V  S  +G TS+   +  
Sbjct: 331 FQLKLDAQKGDGLVKVLAEPNLMAISGQEASFLAGGK-VYIPVPQSFGSGTTSILLQEET 389

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSE--PV-IGVNAGD------MPSYRVRKADTTVEL 362
           +GV L FTPTVL  GRI L++  EVSE  P  + V A +      +P    R+A TT+++
Sbjct: 390 FGVGLRFTPTVLENGRINLKVAPEVSELSPTGVAVTAPNVSGTSILPLITTRRASTTLQV 449

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
             G +  + GL+K +I    + IP + ++P++GAL R++ F +++TE+    TP LVKP+
Sbjct: 450 HDGQSFAIGGLIKSNITGSLKAIPGVGELPVIGALARSTSFQQDQTELLFVVTPHLVKPL 509

Query: 423 AMRDLSRPDDHYSVEDDAKAFF 444
              +   P D +   +  + + 
Sbjct: 510 PA-NYPMPTDSFGPVNQGEVYL 530


>gi|309780760|ref|ZP_07675501.1| type II and III secretion system protein:Transport-associated
           [Ralstonia sp. 5_7_47FAA]
 gi|308920442|gb|EFP66098.1| type II and III secretion system protein:Transport-associated
           [Ralstonia sp. 5_7_47FAA]
          Length = 603

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 214/409 (52%), Gaps = 41/409 (10%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++++ + K  ++Q+P  V+   V +P     ++ SP+T+Y+ G  VG  N+I+ G  G  
Sbjct: 97  EVTVPVGKSTMVQLPEPVRSRTVGNPNVVQAMLVSPQTLYVLGLEVGSTNMIVQGRSGSC 156

Query: 109 MLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + +D+ +  D   L+ TLR+ + ++ N++V   +D++VL G V     +Q+ V+++  F
Sbjct: 157 SV-VDVAVGADPGGLQSTLRKLMPEARNVQVSAAADSLVLGGSVSDSVQAQKVVDIANAF 215

Query: 168 L---------------SQSGRNQY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
           +                Q G+  +     A   S +++N++ +    QV L+V +AEV +
Sbjct: 216 VMRRTRGPNEGDQNATGQGGQQLHTAGPGAPLRSPRIINMMTVEAPQQVMLEVKVAEVSK 275

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
            ++ Q+G   +  G+    S SF A     F+S   D       +    +  L A +   
Sbjct: 276 TLIDQMGAAFNANGAFG--SWSFGAI--ANFLSGSSDIVNFSKANHLPLKFALDAQKGDG 331

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTV 322
            ++ LAEP+L AISGQ ASF +GG+ ++  V+    A  V T       +GV L FTPTV
Sbjct: 332 LVKVLAEPSLMAISGQEASFLAGGK-VFIPVAQGAAANGVATIVLQEETFGVGLRFTPTV 390

Query: 323 LSPGRIGLRIQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGL 373
           +  GRI L++  EVSE       V   N+ +   +P    R+A TT+++  G +  + GL
Sbjct: 391 MENGRINLKVSPEVSELSPTGVAVTAPNSNNTSILPLITTRRASTTLQVHDGQSFAIGGL 450

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           +K++I    + +P + ++PI+G+L R++ F +++TE+    TP LVKP+
Sbjct: 451 IKNNITGSLKALPGIGELPIIGSLARSTSFQQDQTELLFVVTPRLVKPL 499


>gi|87199101|ref|YP_496358.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134782|gb|ABD25524.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 539

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 134/459 (29%), Positives = 223/459 (48%), Gaps = 63/459 (13%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + ++I + +  ++ VP  + DV V+D   ADV V S   +Y+FGK  G+  +      G 
Sbjct: 52  RTVTISIGRGELVTVPGRMADVFVADERVADVQVKSTNQLYVFGKAGGETTIYASNAKGD 111

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + + ++ +  ++  ++  L   + ++ I V  +++TV+L G V   +D+  A  L + F
Sbjct: 112 VVWSANVRVGNNLDSIDQMLHLAMPEARINVATMNNTVLLTGTVAAPEDAAEAERLVKAF 171

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF------------ 215
           + +             V++ L +A   QV+L V  AEV R +++ +G             
Sbjct: 172 VGEK----------TNVISRLKMATPLQVSLHVKFAEVSRSLVRTLGVNLTTIDGTGGIK 221

Query: 216 ----QHSITGS----------------------SSGPSKSFAADFGGKFV--SEGGDFSV 247
               Q S TGS                       +G + ++ +  G      S G   + 
Sbjct: 222 FGIGQGSTTGSVATNRNLPFGVGTSSTSGYILDPTGATSNYVSATGTSVAASSSGTTIAG 281

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
            G L        L A E    + TL+EP LTAISG++A F +GG++    VS   G TS+
Sbjct: 282 MGKLLGLDLLAALDAGETIGLVTTLSEPNLTAISGETAEFLAGGEYPIP-VSQGLGTTSI 340

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELP 363
               YGV L +TPTVL+ GRI +R++ E SE      + +++ ++P+  VR+A+TTVEL 
Sbjct: 341 EYKKYGVSLAYTPTVLANGRISIRVRPEASELSSTGALKLDSVEIPALTVRRAETTVELG 400

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SG + ++AGLL++  Q     +P    IPILG+LFR++ + + ETE+ I  TP+LV PV 
Sbjct: 401 SGQSFMIAGLLQNGAQNALTKMPGAGDIPILGSLFRSTSYKKGETELVIVVTPYLVNPVN 460

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
             D+  P D +           N + ++ G  E+  V G
Sbjct: 461 ANDIKLPTDGFQSP--------NEIQRLLGHMESDGVTG 491


>gi|193782542|ref|NP_435332.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|307319126|ref|ZP_07598556.1| type II and III secretion system protein [Sinorhizobium meliloti
           AK83]
 gi|193072997|gb|AAK64744.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|306895233|gb|EFN25989.1| type II and III secretion system protein [Sinorhizobium meliloti
           AK83]
          Length = 466

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 225/455 (49%), Gaps = 24/455 (5%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG--KKISIGLNKVIILQ 61
           + R+  ++ + F F     VA    I  +  A  N   VEI     + I +   K + ++
Sbjct: 1   MTRSRGSLFAFFCFV----VALCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIR 56

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
                 ++++ DP  A V   + R+ Y+ G  +G  +V +   +   +  +DI +  D  
Sbjct: 57  AVQRFDEIVIGDPEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTK 116

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            L  T+R+ +  S+++V   +  +VL G       + +A +++  F           +  
Sbjct: 117 LLSSTIRQSVPGSSVKVTSANGRIVLSGSATDAVAATQAEQIASRF-----------AGD 165

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++V+N + I    QV L V   E+ RD+ K++G Q S   + S  S  F +       + 
Sbjct: 166 EEVINSIKITSSQQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSPRATSNTP 225

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G      + + +S +  + ALE     R LAEP L A SG+++SF +GG+     +S  
Sbjct: 226 AGSLIGSLIGEGYSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIP-ISEQ 284

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDM--PSYRVRKAD 357
            G  +V+   +GV L FTPTVLS G I L I+ EVS  +       G++  P + VR+A 
Sbjct: 285 DGTITVSYKKFGVGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRAR 344

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T+V+L SG + ++AGLL+ +   + + +P L ++PILGALF +  + R ET++ I  TP 
Sbjct: 345 TSVDLKSGQSFMIAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPH 404

Query: 418 LVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           LVKP+  ++ ++ P D      +A+ FF   ++++
Sbjct: 405 LVKPIDPLKKVASPSDRTKRPTEAE-FFLGNIDEV 438


>gi|241662165|ref|YP_002980525.1| type II and III secretion system protein [Ralstonia pickettii 12D]
 gi|240864192|gb|ACS61853.1| type II and III secretion system protein [Ralstonia pickettii 12D]
          Length = 603

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 214/409 (52%), Gaps = 41/409 (10%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++++ + K  ++Q+P  V+   V +P     ++ SP+T+Y+ G  VG  N+I+ G  G  
Sbjct: 97  EVTVPVGKSTMVQLPEPVRSRTVGNPNVVQAMLVSPQTLYVLGLEVGSTNMIVQGRSGSC 156

Query: 109 MLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + +D+ +  D   L+ TLR+ + ++ N++V   +D++VL G V     +Q+ V+++  F
Sbjct: 157 SV-VDVAVGADPGGLQSTLRKLMPEARNVQVSAAADSLVLGGSVSDSVQAQKVVDIANAF 215

Query: 168 L---------------SQSGRNQY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
           +                Q G+  +     A   S +++N++ +    QV L+V +AEV +
Sbjct: 216 VMRRTRGPNEGEQNATGQGGQQLHTAGPGAPLRSPRIINMMTVEAPQQVMLEVKVAEVSK 275

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
            ++ Q+G   +  G+    S SF A     F+S   D       +    +  L A +   
Sbjct: 276 TLIDQMGAAFNANGAFG--SWSFGAI--ANFLSGSSDIVNFSKANHLPLKFALDAQKGDG 331

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTV 322
            ++ LAEP+L AISGQ ASF +GG+ ++  V+    A  V T       +GV L FTPTV
Sbjct: 332 LVKVLAEPSLMAISGQEASFLAGGK-VFIPVAQGAAANGVATIVLQEETFGVGLRFTPTV 390

Query: 323 LSPGRIGLRIQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGL 373
           +  GRI L++  EVSE       V   N+ +   +P    R+A TT+++  G +  + GL
Sbjct: 391 MENGRINLKVSPEVSELSPTGVAVTAPNSNNTSILPLITTRRASTTLQVHDGQSFAIGGL 450

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           +K++I    + +P + ++PI+G+L R++ F +++TE+    TP LVKP+
Sbjct: 451 IKNNITGSLKALPGIGELPIIGSLARSTSFQQDQTELLFVVTPRLVKPL 499


>gi|89899603|ref|YP_522074.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89344340|gb|ABD68543.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 571

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 207/418 (49%), Gaps = 69/418 (16%)

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNI 136
           DV++ +P  +YL GK +G  NV+++  DG      D+++  D   L+  + + +  +  I
Sbjct: 124 DVLLLAPTEVYLLGKTIGTTNVVMLDRDGT-CTAFDVVVAMDTMALQAVIGQLLPIEKEI 182

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFL-SQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           +V    D++VL GMV   +   R  +L+  ++  Q G  Q    S+++V+N+L +    Q
Sbjct: 183 KVTSAFDSIVLSGMVSDTEALTRVTDLANAYVRGQDGGGQ----SNQRVVNMLEVGAPQQ 238

Query: 196 VTLKVTIAEVRRDILKQIGF-----------------------------QHSITGSSSGP 226
           V L+V +AE+ + +L Q G                              Q S TG+S  P
Sbjct: 239 VMLEVKVAEISKSLLDQFGINFSRAYVPGDGSMMRFLSGIFGGAVGAMGQISGTGASGVP 298

Query: 227 SKSFAADFGGKFV---SEGGDFSVK--GVLDRFSFET-------------VLHALERATA 268
             S  A  GG      + GG+ +V       R ++ T              L+  +    
Sbjct: 299 FSSVDAVIGGTVPIAGASGGNVTVTYDATTGRPTYTTSYGTVPGRGVSNATLNMQKNDGL 358

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----HDYGVVLHFTPTVLS 324
           ++ LAEPT+ AISGQ+ SF +GG+ ++  VS   G+   TT     ++GV + FTPTVL 
Sbjct: 359 VKVLAEPTIMAISGQTGSFLAGGK-IFIPVSKDNGSGGSTTTLEEKEFGVSVRFTPTVLG 417

Query: 325 PGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            GRI LR++ EVSE  +        G+NA  +PS+  RKA+TTV+L  G +  + GL+K+
Sbjct: 418 SGRINLRVRPEVSELNVAGVQISSGGLNA-VLPSFTSRKAETTVQLMDGQSFAIGGLIKN 476

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +        P L ++P++GALFR++ F  + +E+    TP LVKP+ +     P D Y
Sbjct: 477 NTTTNINAFPFLGELPVVGALFRSTEFQTDRSELVFVITPRLVKPLPV-GYRLPTDGY 533


>gi|307300715|ref|ZP_07580490.1| type II and III secretion system protein [Sinorhizobium meliloti
           BL225C]
 gi|306904249|gb|EFN34834.1| type II and III secretion system protein [Sinorhizobium meliloti
           BL225C]
          Length = 466

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 225/455 (49%), Gaps = 24/455 (5%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG--KKISIGLNKVIILQ 61
           + R+  ++ + F F     VA    I  +  A  N   VEI     + I +   K + ++
Sbjct: 1   MTRSRGSLFAFFCFV----VALCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIR 56

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
                 ++++ DP  A V   + R+ Y+ G  +G  +V +   +   +  +DI +  D  
Sbjct: 57  AVQRFDEIVIGDPEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTK 116

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            L  T+R+ +  S+++V   +  +VL G       + +A +++  F           +  
Sbjct: 117 LLSSTIRQSVPGSSVKVTSANGRIVLSGSATDAVAATQAEQIASRF-----------AGD 165

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++V+N + I    QV L V   E+ RD+ K++G Q S   + S  S  F +       + 
Sbjct: 166 EEVINSIKITSSQQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSPRATSNTP 225

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G      + + +S +  + ALE     R LAEP L A SG+++SF +GG+     +S  
Sbjct: 226 AGSLIGSLIGEGYSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIP-ISEQ 284

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDM--PSYRVRKAD 357
            G  +V+   +GV L FTPTVLS G I L I+ EVS  +       G++  P + VR+A 
Sbjct: 285 DGTITVSYKKFGVGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRAR 344

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T+V+L SG + ++AGLL+ +   + + +P L ++PILGALF +  + R ET++ I  TP 
Sbjct: 345 TSVDLKSGQSFMIAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPH 404

Query: 418 LVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           LVKP+  ++ ++ P D      +A+ FF   ++++
Sbjct: 405 LVKPIDPLKKVASPSDRTKRPTEAE-FFLGNIDEV 438


>gi|12620550|gb|AAG60826.1|AF322012_131 RhcC2 [Bradyrhizobium japonicum]
          Length = 484

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 129/429 (30%), Positives = 206/429 (48%), Gaps = 29/429 (6%)

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           K + L  P     + V+DP  AD    S  T+++FGK  G+ ++  +  +G+ +  L I+
Sbjct: 75  KTVHLSAPAAT--IFVADPAIADYQAPSSSTIFVFGKKSGRTSLFALNENGEALAELRIV 132

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           + + +  L   L+  + D  I+V       +L G+       + A +++E F+       
Sbjct: 133 VTQPLEDLRAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVEAARKVTEQFVG------ 186

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
               +   V+N + +AG  QV L V +AEV R  +K +    +I  ++SGP+ +F A   
Sbjct: 187 ----AGAPVVNKIQVAGSLQVNLSVRVAEVSRTAVKDL----NINFTASGPNGAFLAT-- 236

Query: 236 GKFVSEGGDFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           GK    G       +   FS        VL AL        LAEP LTA+SG++ASF +G
Sbjct: 237 GKPGGSGRAGGGGTIGIGFSTGNINLSAVLDALASEHLASILAEPNLTAMSGEAASFLAG 296

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346
           G+     +  +    SV    +GV L F PTVLS  +I +R++ EVSE      + +N  
Sbjct: 297 GEFPIPVMQDNR-QVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSELSTEGEVKINGM 355

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P+   R+A T VEL SG +  + GL++ +        P L  +PILGALFR+S F + 
Sbjct: 356 AVPALSTRRASTVVELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPILGALFRSSSFQKR 415

Query: 407 ETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
           ETE+ I  TP++V+P +    +S P +  +   DA     N V +    ++A        
Sbjct: 416 ETELVIVVTPYIVRPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQGRDAPRASAPGL 475

Query: 466 KGAIGFIYK 474
            G  GFI +
Sbjct: 476 TGNAGFIIE 484


>gi|17545374|ref|NP_518776.1| outer membrane channel protein [Ralstonia solanacearum GMI1000]
 gi|17427666|emb|CAD14185.1| probable pilus assembly protein, secretin cpac [Ralstonia
           solanacearum GMI1000]
          Length = 634

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 228/439 (51%), Gaps = 50/439 (11%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++++ + K  ++Q+   V+   V +P     ++ SP+T+YL G++VG  N+I+ G  G  
Sbjct: 97  EVTVPVGKSTMVQLTEPVRSRTVGNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSC 156

Query: 109 MLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + +D+ +  D   L+ TL   + + S +RV   +D++VL G V     +Q+ ++++  F
Sbjct: 157 SV-IDVSVGADPGGLQATLHALMPEASRVRVSAAADSLVLGGTVSDSVQAQKIIDIANAF 215

Query: 168 L-------SQSGR--------------NQYANSSS--------KKVMNLLNIAGEDQVTL 198
           +       +QSG+                 A +SS         +++N++++    QV L
Sbjct: 216 VMRETRGPAQSGQTGTMGMQGMTAMSTGNAATASSGSGEAVRNPRIINMMSVEAPQQVML 275

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           +V +AEV + ++ Q+G   ++ GS    S +F A     F+S   D       ++  F+ 
Sbjct: 276 EVKVAEVSKTLINQMGAALNLNGSFG--SWTFGAL--ANFLSGAPDIFSADKANKLPFQL 331

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHD--YGV 314
            + A +    ++ LAEP L AISGQ ASF +GG+ +Y  V  S  TG T++   +  +GV
Sbjct: 332 RVDAQKGDGLVKVLAEPNLMAISGQEASFLAGGK-VYIPVPQSFGTGTTTILLQEETFGV 390

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE--PV-IGVNAGD------MPSYRVRKADTTVELPSG 365
            L FTPTVL  GRI L++  EVSE  P  + V A +      +P    R+A TT+++  G
Sbjct: 391 GLRFTPTVLENGRINLKVAPEVSELSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHDG 450

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            +  + GL+K ++    + IP + ++P++GAL R++ F +++TE+    TP LVKP+   
Sbjct: 451 QSFAIGGLIKSNVTGSLKAIPGVGELPVIGALARSTSFQQDQTELLFVVTPHLVKPLPA- 509

Query: 426 DLSRPDDHYSVEDDAKAFF 444
           +   P D +   +  + + 
Sbjct: 510 NYPMPTDSFGPVNQGEVYL 528


>gi|300704930|ref|YP_003746533.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957]
 gi|299072594|emb|CBJ43944.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957]
          Length = 622

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 220/433 (50%), Gaps = 44/433 (10%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++++ + K  ++Q+P  V++  V +P     ++ SP+T+YL G+ VG  N+I+ G  G  
Sbjct: 99  EVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVSPQTLYLLGQEVGTTNMIVQGRSGSC 158

Query: 109 MLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + +D+ +  D   L+ TLR  +  + N++V   +D++VL G V     +Q+ ++++  F
Sbjct: 159 SV-IDVSVGADPGGLQSTLRTLVPGAKNVQVSAAADSLVLSGSVSDSVQAQKVLDIANAF 217

Query: 168 LSQSGRNQY----------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           + +  R                         A   S +++N++ +    QV L+V +AEV
Sbjct: 218 VMRQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPRSPRIINMMAVEAPQQVMLEVKVAEV 277

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            + ++ Q+G   ++ G+    S +F A     F+S   D       +    +  L A + 
Sbjct: 278 SKTLIDQMGSALNVNGAFG--SWTFGAL--ANFLSGSNDIVNFSKNNHLPLKFALDAQKG 333

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTP 320
              ++ LAEP+L AISGQ ASF +GG+ ++  V+       V T       +GV L FTP
Sbjct: 334 DGLVKVLAEPSLMAISGQEASFLAGGK-VFIPVAQGAATNGVATIILQEETFGVGLRFTP 392

Query: 321 TVLSPGRIGLRIQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLA 371
           TV+  GRI L++  EVSE       V   N+ +   +P    R+A TT+++  G +  + 
Sbjct: 393 TVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSILPLITTRRASTTLQVHDGQSFAIG 452

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K+++    + IP + ++P++GAL R++ F +++TE+    TP LVKP+  +    P 
Sbjct: 453 GLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQTELVFVVTPRLVKPLPAQ-YPLPT 511

Query: 432 DHYSVEDDAKAFF 444
           D +   + A+ F 
Sbjct: 512 DSFGQANPAEIFL 524


>gi|27376953|ref|NP_768482.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110]
 gi|27350095|dbj|BAC47107.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110]
          Length = 430

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 129/429 (30%), Positives = 206/429 (48%), Gaps = 29/429 (6%)

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           K + L  P     + V+DP  AD    S  T+++FGK  G+ ++  +  +G+ +  L I+
Sbjct: 21  KTVHLSAPA--ATIFVADPAIADYQAPSSSTIFVFGKKSGRTSLFALNENGEALAELRIV 78

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           + + +  L   L+  + D  I+V       +L G+       + A +++E F+       
Sbjct: 79  VTQPLEDLRAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVEAARKVTEQFVG------ 132

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
               +   V+N + +AG  QV L V +AEV R  +K +    +I  ++SGP+ +F A   
Sbjct: 133 ----AGAPVVNKIQVAGSLQVNLSVRVAEVSRTAVKDL----NINFTASGPNGAFLAT-- 182

Query: 236 GKFVSEGGDFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           GK    G       +   FS        VL AL        LAEP LTA+SG++ASF +G
Sbjct: 183 GKPGGSGRAGGGGTIGIGFSTGNINLSAVLDALASEHLASILAEPNLTAMSGEAASFLAG 242

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346
           G+     +  +    SV    +GV L F PTVLS  +I +R++ EVSE      + +N  
Sbjct: 243 GEFPIPVMQDNR-QVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSELSTEGEVKINGM 301

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P+   R+A T VEL SG +  + GL++ +        P L  +PILGALFR+S F + 
Sbjct: 302 AVPALSTRRASTVVELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPILGALFRSSSFQKR 361

Query: 407 ETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
           ETE+ I  TP++V+P +    +S P +  +   DA     N V +    ++A        
Sbjct: 362 ETELVIVVTPYIVRPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQGRDAPRASAPGL 421

Query: 466 KGAIGFIYK 474
            G  GFI +
Sbjct: 422 TGNAGFIIE 430


>gi|123443821|ref|YP_001007792.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090782|emb|CAL13664.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 453

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 203/398 (51%), Gaps = 33/398 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +S G + +I  Q  +D   V VS    AD  +    ++ ++ K  G A  IL   +   +
Sbjct: 37  LSTGESYMIKTQEEIDT--VFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPI 94

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ-------RAVE 162
               IL++  I      +R    +S+I +  + D+ +L G V T +  +        A+ 
Sbjct: 95  KKSAILVDNTITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIG 154

Query: 163 LSETFLSQS-----GRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
             +T  S S     G +QY NS    +V+N + + G +QV +K+TIAEV +D  + IG  
Sbjct: 155 SEKTIASNSKKDSDGNSQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMD 214

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
            S  G+ SG  + F  +   KF ++G                ++HA+   +  R LAEP 
Sbjct: 215 WSTIGNFSGSFQFFKPNGLNKFNAKG-------------ISALVHAINDDSIARVLAEPN 261

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L+ +SG+SASF  GG+     V+++  +T +T   +G+ L+    V +  RI +++  EV
Sbjct: 262 LSVLSGESASFLVGGE--LPLVNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEV 319

Query: 337 S--EPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           S  + V  ++ GD  PS+R RKA TT+EL  G + +L GL+    ++  + IP +  IPI
Sbjct: 320 SSVDKVFNIDGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPI 379

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           LGA FRN+   + +TE+ + AT  LV+PV+ +++  P+
Sbjct: 380 LGAFFRNAETRKNQTELVVVATVNLVRPVSEKEVELPN 417


>gi|13471032|ref|NP_102601.1| secretory protein [Mesorhizobium loti MAFF303099]
 gi|14021776|dbj|BAB48387.1| probable secretory protein [Mesorhizobium loti MAFF303099]
          Length = 461

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 130/415 (31%), Positives = 207/415 (49%), Gaps = 47/415 (11%)

Query: 26  LPPIKEANAAVINIS-----DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
           LP + +A+  ++ +S      +++ KGK  +I  N             +++ DP  A+V 
Sbjct: 13  LPGVAKADNDIVYVSATKNASIKVAKGKPKTIVTNAAFY--------QIVIGDPEIANVN 64

Query: 81  VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
             + ++ Y+ G N+G   + L     + +  +DI +  D   L  T+R  + D+ I+V  
Sbjct: 65  PLTDKSFYVLGNNLGTTGIALFDEKKQLVGTVDIEVTLDTDQLASTIRASVPDAKIKVGS 124

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            +  VVL G       +++A +++  F           S +++V+N +NI+   QV L V
Sbjct: 125 ANGRVVLSGEADDAVAAEKANKIATRF-----------SGTEEVINSVNISSSQQVQLNV 173

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-EGGDFSVKG---VLDRF-- 254
              E+ R   + +G ++S          +FA  FGG+ VS + G     G   ++ R   
Sbjct: 174 RFVEINRQAGQDLGAKYS---------ANFAYGFGGRDVSLDPGTVPAAGTGEIIGRLLS 224

Query: 255 ---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
              S +  + ALE     R LAEP L A SG++ASF +GG+     VS   G  SV+   
Sbjct: 225 NGVSIDIAIKALEERGLARRLAEPNLIARSGETASFLAGGEFPIP-VSEDNGKISVSYKK 283

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELPSGGT 367
           YGV L FTPTVL  G + L I  EVS  +     N G   +P + VR+A T+V+L +G +
Sbjct: 284 YGVSLDFTPTVLKDGLVSLDIAPEVSSIDASSSYNIGTISVPGFIVRRAKTSVDLKNGQS 343

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            ++AGLL+         IP L K+P+LGALF +  + R ET++ I  TP+LVKPV
Sbjct: 344 FMIAGLLQSQNDITTSRIPGLGKMPVLGALFSSKSYQRRETDLVIIVTPYLVKPV 398


>gi|218710406|ref|YP_002418027.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
 gi|218323425|emb|CAV19602.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
          Length = 484

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 216/446 (48%), Gaps = 27/446 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           GK +++  +K   + +      V + DP   D+V+     ++L GK +G  N++     G
Sbjct: 25  GKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVMLKSSELFLIGKKLGATNLMAWDSRG 84

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + + +++I +  D+  L+  L  F+ D  I V    + ++L G V   Q    A+ ++ET
Sbjct: 85  QLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQMNVAMRIAET 144

Query: 167 FLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216
           + S    ++   S S++     V+NL++I G  QV L+VT+AEV+R ++++       FQ
Sbjct: 145 YSSGETADESKESGSEQAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQ 204

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRT 271
            S +  S G S   A   G   + +    +  G+L  F      F   L   ++    + 
Sbjct: 205 TSGSNISWGASSVPAGVLGATPIFDIPTSTDYGILGSFIDSNTLFTFALDVAKQNGVAKV 264

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP LTA+SG  A F +GG+     V    G T +   +YGV L F PTVLS  +I L 
Sbjct: 265 LAEPNLTALSGSKAEFLAGGEFPIP-VPDEDGIT-IEYKEYGVGLKFIPTVLSDKKINLN 322

Query: 332 IQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +  +VSE      + ++ G       +P    R A +T+EL  G TI +AGLL ++++ +
Sbjct: 323 LAVDVSEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDV 382

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P +  +PILG LF +  +   ETE+ I  TP L  P+    ++ P D +   +D +
Sbjct: 383 SNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLASPIDRSKVTLPTDAFVDPNDLE 442

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKG 467
            +   R   I  P E+   + Q  +G
Sbjct: 443 YYLLGRSAYIAEPSESDSEQSQASQG 468


>gi|326797327|ref|YP_004315147.1| type II and III secretion system protein [Marinomonas mediterranea
           MMB-1]
 gi|326548091|gb|ADZ93311.1| type II and III secretion system protein [Marinomonas mediterranea
           MMB-1]
          Length = 464

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 209/415 (50%), Gaps = 26/415 (6%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+    ++ + +N+  +L +P     VL+++P  A   + SP  +++F K  G   +  +
Sbjct: 44  EVAVSGQVKLHVNQGTLLNLPKAASKVLIANPEVASFQMPSPDNVFVFAKAPGDTTLYAL 103

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQRAV 161
             +   ++ + +    D+  L   + + +  + ++V   +D  +++ G V+T Q +++ +
Sbjct: 104 DENNDVIIAVTLTSGYDLEGLTRQVAKEVPGTEVQVGPATDKGLIVRGTVQTPQQAKQVI 163

Query: 162 ELSETFLSQS-------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
              E++L  S       GR   +N S  +++N L +A   QV + V I EV R +   +G
Sbjct: 164 SSVESYLGASTSANGRGGRGGQSNQS-LRIVNQLKVALSSQVNISVRIVEVSRSLTHALG 222

Query: 215 FQHSI-----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET--VLHALERAT 267
           F         TG     S  F A  G   V +G   S+ GVL     +   VL AL    
Sbjct: 223 FSWDTLFDNNTGFIRNGSSLFDASTG---VFDGSGISL-GVLGGTIGDVGGVLSALSNDG 278

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               LAEP LTA+SG++A F  GG+     V  +  + ++    YGV++  TPT+LSP R
Sbjct: 279 MASILAEPNLTAMSGETAGFAVGGE--VPIVIQTNNSVTIEYKQYGVIMRMTPTLLSPNR 336

Query: 328 IGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           I L I  EVS+      + +N   +P+++VR+A+TTVEL SG +  LAG+L+  + Q   
Sbjct: 337 ISLHIAPEVSDLSDDGSVVLNDTTIPAFKVRRANTTVELASGQSFALAGMLRSSVSQTVS 396

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           G+P L  IP+LG +F      +EETE+ I AT ++V+P +  +L  P    S  D
Sbjct: 397 GVPGLRSIPVLGRMFETEINQKEETELVIIATAYIVEPTSANNLQSPAQGISTID 451


>gi|86147467|ref|ZP_01065779.1| Flp pilus assembly protein [Vibrio sp. MED222]
 gi|85834760|gb|EAQ52906.1| Flp pilus assembly protein [Vibrio sp. MED222]
          Length = 485

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/438 (28%), Positives = 213/438 (48%), Gaps = 27/438 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           GK +++  +K   + +      V + DP   D+V+     ++L GK +G  N++     G
Sbjct: 25  GKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVILKSNEVFLIGKKLGATNLMAWDSRG 84

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + + +++I +  D+  L+  L  F+ D  I V    + ++L G +   Q    A+ ++ET
Sbjct: 85  QLIESINIEVTHDLNSLKSKLYEFLPDETIEVHSAQNRLLLSGQISNQQKMNVAMRIAET 144

Query: 167 FLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216
           + +    +    S S++V     +NL++I G  QV L+VT+AEV+R ++++       FQ
Sbjct: 145 YAAGQAADDSKESGSEQVAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQ 204

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRT 271
            S +  S G S   A   G   V +    +  G+L  F      F   L   ++    + 
Sbjct: 205 TSGSNFSWGASSVPAGALGATPVFDIPTSTDYGILGSFIDSNTLFTFALDVAKQNGVAKV 264

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP LTA+SG  A F +GG+     V    G T +   +YGV L F PTVLS  +I L 
Sbjct: 265 LAEPNLTALSGSKAEFLAGGEFPIP-VPDEDGIT-IEYKEYGVGLKFIPTVLSDKKINLN 322

Query: 332 IQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +  +VSE      + ++ G       +P    R A +T+EL  G TI +AGLL ++++ +
Sbjct: 323 LAVDVSEIANSSSLTIDPGSTNATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDV 382

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P +  +PILG LF +  +   ETE+ I  TP L KPV    ++ P D +   +D +
Sbjct: 383 SNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLAKPVDRSKVTLPTDAFVDPNDLE 442

Query: 442 AFFFNRVNKIYGPKEASE 459
            +   R   I  P ++ +
Sbjct: 443 YYLLGRSAYIAEPSDSED 460


>gi|308050059|ref|YP_003913625.1| type II and III secretion system protein [Ferrimonas balearica DSM
           9799]
 gi|307632249|gb|ADN76551.1| type II and III secretion system protein [Ferrimonas balearica DSM
           9799]
          Length = 487

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/409 (30%), Positives = 201/409 (49%), Gaps = 53/409 (12%)

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL-DILIERDIAHLEMTL 127
           V V +P  AD+++ +P+ +Y+ G+ +G  N I++  D  +++++ DI I  D+  L+  L
Sbjct: 67  VSVGNPAIADILLINPKELYILGRQLGSTN-IMVWDDQDRLVDIVDIEITHDLNGLKEKL 125

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
            RF+ D  I V      +V+ G V  +     A++L+  +   +  N   N+S+  V+NL
Sbjct: 126 HRFLPDEPIEVHSSQGQLVIGGQVSNLDRMNMALDLAHGYAVAA--NNSDNTST--VLNL 181

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-- 245
           +++ G  QV L+VT+ EV+R++                 +++  +DF    V EG DF  
Sbjct: 182 MSVGGGHQVMLEVTVTEVQREL-----------------ARTLDSDFA--LVFEGSDFIG 222

Query: 246 ---------SVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                    S KG+   +      F+  +   ++    R LAEP LT +SGQ A F SGG
Sbjct: 223 GLLGGDGLISNKGIFGSYVSGDVLFDFAIDMAKQQGLARVLAEPNLTTMSGQMAEFLSGG 282

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----------PVI 341
           +  +         T++   ++GV + F PTVL  GRI L +   VSE          P  
Sbjct: 283 E--FPIPVPDRDGTTIEYKEFGVGVKFVPTVLDSGRINLNLNVLVSELSNANAVGVIPEG 340

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
              A   PS   R A++T+EL  G TI +AGLL   +++  + +P L +IP+LG LF + 
Sbjct: 341 STTALVTPSITKRSANSTIELGDGQTIAIAGLLSSTVRESMDELPGLGEIPVLGQLFSSQ 400

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
            +   ETE+ I  TP LV+PV    L  P D +    D   +   R++K
Sbjct: 401 EYRNGETELVILVTPRLVRPVDREKLVLPTDGFVDPTDLGFYLMGRLSK 449


>gi|84387245|ref|ZP_00990266.1| Flp pilus assembly protein [Vibrio splendidus 12B01]
 gi|84377892|gb|EAP94754.1| Flp pilus assembly protein [Vibrio splendidus 12B01]
          Length = 484

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 213/442 (48%), Gaps = 27/442 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           GK +++  +K   + +      V + DP   D+V+     ++L GK +G  N++     G
Sbjct: 25  GKTVTVPHHKSTHVVLSGKAAKVSLGDPEVLDIVILKSNELFLIGKKLGATNLMAWDSRG 84

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + + +++I +  D+  L+  L  F+ D  I V    + ++L G V   Q    A+ ++ET
Sbjct: 85  QLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQMNVAMRIAET 144

Query: 167 FLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216
           + S    ++   S S++     V+NL++I G  QV L+VT+AEV+R ++++       FQ
Sbjct: 145 YSSGQTADKSNESGSEQADATGVINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQ 204

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRT 271
            S +  S G S   A   G   +      +  G+L  F      F   L   ++    + 
Sbjct: 205 TSGSDFSWGASSVPAGVLGATPIFNIPTSTDYGILGSFIDSNTLFTFALDVAKQNGVAKV 264

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP LTA+SG  A F +GG+     V    G T +   +YGV L F PTVLS  +I L 
Sbjct: 265 LAEPNLTALSGSKAEFLAGGEFPIP-VPDEDGIT-IEYKEYGVGLKFIPTVLSDKKINLN 322

Query: 332 IQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +  +VSE      + ++ G       +P    R A +T+EL  G TI +AGLL ++++ +
Sbjct: 323 LAVDVSEIANTSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDI 382

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P    +PILG LF +  +   ETE+ I  TP L KP+    ++ P D +   +D +
Sbjct: 383 SNKMPGFGDVPILGQLFNSQEYISGETELVILVTPRLAKPIDRSKVTLPTDAFVDPNDLE 442

Query: 442 AFFFNRVNKIYGPKEASEVEGQ 463
            +   R   I  P E+   + Q
Sbjct: 443 YYLLGRGAYIAEPSESDSEQSQ 464


>gi|157961834|ref|YP_001501868.1| type II and III secretion system protein [Shewanella pealeana ATCC
           700345]
 gi|157846834|gb|ABV87333.1| type II and III secretion system protein [Shewanella pealeana ATCC
           700345]
          Length = 478

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/424 (29%), Positives = 210/424 (49%), Gaps = 21/424 (4%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I I  ++V++L+ PV    V V +P+ AD+ +     +Y+ GK +G  NV++   + +  
Sbjct: 37  IPIFKSRVLMLKGPV--HRVSVGNPSIADIKLLPNDELYILGKQLGSTNVMIWDKNEQLA 94

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
             +DI +  D+  L+  L +F+    + V+     ++L G    +Q    AVEL++ +  
Sbjct: 95  RIMDIEVTHDLNGLKTRLYQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAE 154

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
            +   Q    +  KV+N++ I G+ QV L+V +AEV+R++ +Q   +  I    S  S  
Sbjct: 155 AAAGGQ----APSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGSNLSGG 210

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQS 284
                GG      G    KG+  ++          L   ++    + LAEP +TA+SGQS
Sbjct: 211 LVGGGGGFDPGSIGGIDAKGLFAQYINGDLMMNFALDIAKQNGLAKVLAEPNVTAMSGQS 270

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------ 338
           A F SGG+     V    G T++   DYGV + F PTVL  G+I L +   VSE      
Sbjct: 271 AEFLSGGEFPIP-VPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANG 329

Query: 339 -PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             + G  +  +  PS   R   TTVEL  G TI ++GL+ D +++  + +P L  +P+LG
Sbjct: 330 FAISGNTSTTLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLG 389

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
            LF +  F   ++E+ I  TP LV+    +D+S P D + +  D + +   +++      
Sbjct: 390 QLFTSKSFQSGQSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENSD 449

Query: 456 EASE 459
           ++S+
Sbjct: 450 DSSD 453


>gi|295690798|ref|YP_003594491.1| type II and III secretion system protein [Caulobacter segnis ATCC
           21756]
 gi|295432701|gb|ADG11873.1| type II and III secretion system protein [Caulobacter segnis ATCC
           21756]
          Length = 564

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 147/518 (28%), Positives = 231/518 (44%), Gaps = 110/518 (21%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           +E+ KGK          I+++P DV+D+LV+ PT AD V+   R +Y+ G   G  +   
Sbjct: 72  LELAKGKSA--------IVELPADVRDLLVTSPTVADAVLRDRRRVYIVGLAEGVTDAAF 123

Query: 102 IGHDGKQMLNLDILIE------------------------RDIAHLEMTLR--------- 128
               G+++L+L I +                         RD   L  T+R         
Sbjct: 124 FDDAGRRILSLSIKVSQPVDQLADTLSRVLPDAKIEVRPIRDSVVLSGTVRSPAQSDAAA 183

Query: 129 ----RFIADSNIRVEMVS----DTVVLHGMVRTIQDS---QRAVELSETFLSQSGRNQYA 177
               +++   +  + M+S    D V+L   +  ++ +   Q  V+L+   L Q G++QY+
Sbjct: 184 RIAAQYVGGPDKVLNMLSIAGKDQVMLQVRIVEVRRNVIKQLGVDLN-AVLGQLGQSQYS 242

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----- 232
              S       N+ G             + D  KQ   Q    G+  G +K  A      
Sbjct: 243 FGLSPTYSVNGNLLGG-------VTGGYKLDTTKQPTLQIP-CGNGVGDAKCLAVVHGKV 294

Query: 233 --------DFGGKFVSEGGDFSV----KGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                     G + V   GD +      G       + ++ A ER   +RTLAEP LTA+
Sbjct: 295 YHTGVIDPTTGREIVVGNGDTATISDTAGSTGVNQAKGMIQAFERVGLVRTLAEPNLTAV 354

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-- 338
           SG++  F  GG+    T S +TG  ++    YGV L +TP V+S GRI L+I TEVSE  
Sbjct: 355 SGEAGHFLVGGEFPVPTGSDATGKIAIEFKPYGVGLGYTPVVMSGGRISLKISTEVSELS 414

Query: 339 ---------------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
                                P+       +P   VR+A+TTVELPSGG+ ++AGLL+  
Sbjct: 415 SLGAFTISNSTTSGNTTTTSAPLT------VPGLSVRRAETTVELPSGGSFMIAGLLQQT 468

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
            +Q  + +P ++ +PILG+LFR+  F   ETE+ I  TP++V P   RDL  P D   + 
Sbjct: 469 TKQAIDALPGMTNMPILGSLFRSRDFLNGETELVIIVTPYIVDPAKPRDLQTPADGLRMA 528

Query: 438 DDAKAFFFNRVNKIY-GPKEASEVEGQNYKGAIGFIYK 474
            D       R+N++   P  A+   G+ Y+G +G++ +
Sbjct: 529 GDMSTVLLGRLNQVVKAPPGAN--AGRAYQGPVGYVIE 564


>gi|13475294|ref|NP_106858.1| type II secretion system protein [Mesorhizobium loti MAFF303099]
 gi|14026045|dbj|BAB52644.1| type II secretion system protein [Mesorhizobium loti MAFF303099]
          Length = 432

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/406 (30%), Positives = 196/406 (48%), Gaps = 29/406 (7%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
            +S  L K + L  P     + V+DPT AD    S  T+++FGK  G+ ++  +   G+ 
Sbjct: 19  NLSSSLGKTVHLPAPATT--IFVADPTIADYQAASNTTIFVFGKKSGRTSLFALDDKGEA 76

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           +  L I++ + I  L   L   + DS+I+V       +L G     + +  A  ++E +L
Sbjct: 77  LAALRIVVTQPIEELRAMLMDQVGDSSIQVSYTPRGAILSGTAPNAEVADTAKRVTEQYL 136

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------ 222
                         +V+N + +AG  QV L V +AEV R  +K +G   S  G       
Sbjct: 137 GDGA----------QVVNNIKVAGSLQVNLSVRVAEVSRSAMKALGVNLSAFGQIDNFRV 186

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    +       + G  F+   V    +   VL AL +      LAEP LTA+SG
Sbjct: 187 GLLSGGGTGSGAAQGGGTAGIGFNNGAV----NIGAVLDALAKEHIASVLAEPNLTAMSG 242

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
           ++ASF +GG+     +  +    SV    +GV L F PTVL+  RI + ++ EVSE    
Sbjct: 243 ETASFLAGGEFPIPVLQENK-QVSVEFRHFGVSLEFVPTVLNNNRINIHVKPEVSELSSQ 301

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             + +N   +P+   R+ADT VEL SG +  + GL++ ++       P L ++PILGALF
Sbjct: 302 GAVQINGISVPAVSTRRADTVVELASGQSFAIGGLIRRNVNNNVSAFPWLGEMPILGALF 361

Query: 399 RNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVE-DDAKA 442
           R+S F +EE+E+ I  TP++VKP  +   +S P D  +   DD  A
Sbjct: 362 RSSSFQKEESELIILVTPYIVKPGSSPNQMSAPTDRMAPALDDPPA 407


>gi|163751744|ref|ZP_02158962.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica
           KT99]
 gi|161328396|gb|EDP99555.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica
           KT99]
          Length = 484

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 216/435 (49%), Gaps = 37/435 (8%)

Query: 59  ILQVPV----------DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           I+Q+P+           V  V V +P   D+ +     +Y+ GK +G  N+++   + + 
Sbjct: 39  IMQIPIFKSRIINLKHAVHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIMIWDENERL 98

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           +  +DI I  D+  L++ L  F+    + V+     +++ G    ++    AVEL++ + 
Sbjct: 99  VDVIDIEITHDLNGLKLRLHEFLPGEKLGVQTSQGHLLISGQASNLKKMNTAVELAKAYA 158

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------TG 221
           + +  ++  ++    V+N++ + G+ QV L+V IAEV+R++ +Q   +  I       +G
Sbjct: 159 AAASVSKVKST----VLNMMTVGGDHQVMLEVVIAEVQREVARQFDSKFFIFNKGSKMSG 214

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             +G   SF  D      S G  F  + + D       L   ++    + LAEPT+TA+S
Sbjct: 215 GVAGRGGSFDLDPAAAIDSRG--FFARYLNDNLMMNFALDVAKQNGLAKILAEPTVTALS 272

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--- 338
           GQSA F SGG+     V    G+T++   D+GV + F PTVL  G+I L +   VSE   
Sbjct: 273 GQSAEFLSGGEFPIP-VPGINGSTTIQYRDFGVGVRFVPTVLDSGQINLNLNVIVSEISN 331

Query: 339 -PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
              + ++ G       +PS   R   TTVEL  G TI ++GL+ D +++  + +P L  I
Sbjct: 332 VHSVSLSGGGSNATLIVPSIVKRTTSTTVELADGQTIAISGLISDTLRENIDKLPGLGDI 391

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           PILG LF +  F   ++E+ I  TP LV+P   + +S P D + +  D + +   +++  
Sbjct: 392 PILGQLFTSKSFKSGQSELVILVTPRLVRPFNRKHISLPTDDFVLPSDMEFYLLGKMSH- 450

Query: 452 YGPKEASEVEGQNYK 466
              K+ S+  G  Y+
Sbjct: 451 --KKQNSQRSGTPYE 463


>gi|148976307|ref|ZP_01813031.1| type II and III secretion system protein [Vibrionales bacterium
           SWAT-3]
 gi|145964401|gb|EDK29656.1| type II and III secretion system protein [Vibrionales bacterium
           SWAT-3]
          Length = 464

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 208/412 (50%), Gaps = 47/412 (11%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + +N+  ++++P   + + +S    AD    +   + +FGK  G A + ++    + +
Sbjct: 27  LDVTINEAKMIRLPEKAKSIFISSTHIADYQTLTNTKVMVFGKRAGSATITVLNEQERVI 86

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
               I +  +       ++    ++++  E +   + L G V +   +   V L++ +LS
Sbjct: 87  YTNKIRVTHNSREFNELVKNKFPEASVNAESLGGKLWLKGRVPSPMMAHNIVSLAKGYLS 146

Query: 170 --------QSGRNQYANSSS--------------KKVMNLLNIAGEDQVTLKVTIAEVRR 207
                   + G N   N+SS              ++++N L +   +QV ++V IAEV R
Sbjct: 147 PIVNQTEQKEGSNTNKNNSSDSALTQSQPTSSKEEELINQLVVTMPNQVNIRVKIAEVSR 206

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKF--VSEGGDFSVKGVLDRFSFETVLHALER 265
           ++  ++G +    GS +G    F   +  KF  VS  G  S+  ++D         AL  
Sbjct: 207 NVSNKLGIKW---GSLAGGVGQF---YFAKFPNVSSWGKPSITTLVD---------ALAS 251

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              +  LAEP LTA+SG+ A F  GGQ     +++ T  T +   D+GV L+FTPTVLS 
Sbjct: 252 NGMMSVLAEPNLTAMSGEDAEFLVGGQVPLPLITADT--TQIEYKDFGVKLNFTPTVLSQ 309

Query: 326 GRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQ 380
            RI L++  EVS   I     +   + PS+  R A TT+EL SG +  L GLLK +DI+Q
Sbjct: 310 NRISLKVNPEVSNVSIDGQQVIQGANFPSFTTRSASTTIELASGQSFALGGLLKSEDIEQ 369

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L++ +PL+++IP+LG+LFR++ F R ETE+ I  T +LV+P     +  P D
Sbjct: 370 LQK-VPLVAEIPVLGSLFRSTEFTRRETELIIIVTAYLVQPTRSDSMQLPTD 420


>gi|319783874|ref|YP_004143350.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169762|gb|ADV13300.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 482

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 131/412 (31%), Positives = 202/412 (49%), Gaps = 37/412 (8%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           K++ G  K II         +++ DP  A+V   + ++ Y+ G N+G   + L     + 
Sbjct: 56  KVAKGKPKTIITSAAF--YQIVIGDPEIANVNPLTDKSFYVLGNNLGTTGIALFDEKKQL 113

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           +  +DI +  D   L  T+R  + D+ I+V   +  VVL G       +++A +++  F 
Sbjct: 114 VGTVDIEVTLDTDQLASTIRASVPDARIKVGSANGRVVLSGEADDAVAAEKANKIATRF- 172

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
                     S +++V+N +NI+   QV L V   E+ R   + +G +++          
Sbjct: 173 ----------SGAEEVINSVNISSSQQVQLNVRFVEINRQAGQDLGAKYA---------A 213

Query: 229 SFAADFGGKFVS-EGGDFSVKG---VLDRF-----SFETVLHALERATAIRTLAEPTLTA 279
           +FA   GG+ VS + G     G   ++ R      S +  + ALE     R LAEP L A
Sbjct: 214 NFAYGLGGRDVSIDPGTVPTAGTGEIIGRLLSNGVSIDIAIKALEERGLARRLAEPNLIA 273

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-- 337
            SGQ+ASF +GG+     VS   G  SV+   YGV L FTPTVL  G + L I  EVS  
Sbjct: 274 RSGQTASFLAGGEFPIP-VSEDNGKISVSYKKYGVSLDFTPTVLKDGLVSLDIAPEVSSI 332

Query: 338 EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           +     N G   +P + VR+A T+V+L +G + ++AGLL+         IP L K+P+LG
Sbjct: 333 DASASYNIGTISVPGFIVRRARTSVDLKNGQSFMIAGLLQSQNDITTSRIPGLGKMPVLG 392

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFN 446
           ALF +  + R ET++ I  TP+LVKPV   + L  P D      +A  F  N
Sbjct: 393 ALFSSKSYQRRETDLVIIVTPYLVKPVDPSKKLVEPTDGTQPASNADYFLNN 444


>gi|90406750|ref|ZP_01214943.1| RhcC2 protein [Psychromonas sp. CNPT3]
 gi|90312203|gb|EAS40295.1| RhcC2 protein [Psychromonas sp. CNPT3]
          Length = 459

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 127/417 (30%), Positives = 204/417 (48%), Gaps = 48/417 (11%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
            + K +++ L++  +L +P   + + ++    AD    +   + +FGK VG  ++ ++  
Sbjct: 18  AQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTKIMIFGKRVGSTSLYVLDA 77

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
               + +  + +  ++  L   ++    ++ +  E  +  + L G V T   +++ V L+
Sbjct: 78  RENVIYSATVKVNHNVQELNALIKHEFPNAQVHSESTAGKLFLKGQVSTPSIAEKIVRLA 137

Query: 165 ETFLS---------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           E ++S                     Q G +  +  ++++++N L I    QV L+V IA
Sbjct: 138 EGYVSSNGGKSESAGAATEGGAQDDQQGGESAQSTQNTQELINQLVITMPTQVNLRVRIA 197

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF---ETVL 260
           EV R++  ++G +              A + G    +  G F  K  L    F     ++
Sbjct: 198 EVSRNVSNKLGIKWG------------AQNIG----TISGTFGTKNWLPNVKFPDLSIMI 241

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            AL     I  LAEP LTAISG+ ASF  GG+     V   +   ++    +GV L F P
Sbjct: 242 DALASNGLISILAEPNLTAISGERASFLVGGEIPLPVVFGDSA--NIIYKPFGVRLDFKP 299

Query: 321 TVLSPGRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TVLS  RI L+I+ EVS   P   V  G   +P +  RKA TT+EL SG +  + GLL+ 
Sbjct: 300 TVLSANRIRLQIEPEVSTIAPRTNVQIGGSSLPVFITRKASTTIELASGQSFAIGGLLQS 359

Query: 377 -DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
            DI+QL++ IPLL  IPILGALFR+S F REETE+ I AT +LV+P      S P D
Sbjct: 360 KDIEQLQK-IPLLGDIPILGALFRSSEFQREETELIIIATVYLVQPTRSDKFSLPTD 415


>gi|51245387|ref|YP_065271.1| hypothetical protein DP1535 [Desulfotalea psychrophila LSv54]
 gi|50876424|emb|CAG36264.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 480

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 132/445 (29%), Positives = 216/445 (48%), Gaps = 43/445 (9%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV---VHSPRTMYLFGKNVGQANVILIG 103
           G+ + + +N++  L+    ++   + +P  A+++     SP  +++ GK++G   + L G
Sbjct: 41  GEPVQLTINRLAKLRSSEVIRRAHIVNPDIAELIYSKTQSPAWVFVSGKSIGTTQLTLWG 100

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
              K +   +I++  D+  L+  +       N+ V    D + L G V      Q+ + L
Sbjct: 101 ARNKILGTFEIIVRPDVLGLKKHIHDVFPGENVSVRDSGDFLTLTGTVAGAVRLQKILAL 160

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +E +            +  KV+NLL + G  QV L+V IAE+ + +  Q+G    + GSS
Sbjct: 161 AEAY------------APSKVINLLKVGGIQQVMLEVRIAEISKRVGNQLGINFGLDGSS 208

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG--VLDRF--------------SFETVLHALERAT 267
            G   S      G     GG   ++   VLD                S+   + AL+   
Sbjct: 209 -GFGLSMLDGLSGL---PGGTLPIEPARVLDGLNIGSGVNAVFGKSGSYIVAIDALQEDG 264

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
            ++ LA+PTL A SGQSASF +GG+  +  V+      S+    +GV L+FTPTVL  GR
Sbjct: 265 LVKVLAKPTLIAQSGQSASFLAGGEFPFP-VAQQFDRFSIEWKPFGVGLNFTPTVLGEGR 323

Query: 328 IGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           I L +  EVS+      I      +PS   R+  T VEL    +  +AGL+K++I++  +
Sbjct: 324 ISLLVSPEVSDLDFTNTISYAGYVVPSIETRRMSTVVELNDNQSFAIAGLMKNNIRESIK 383

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
             PLL  IPILG LFR+S++ + ETE+ +  TP LV PV   +LS P D +    +  AF
Sbjct: 384 KFPLLGDIPILGVLFRSSKYIKNETELVVVVTPHLVTPVDGDELSLPTDSFV---EPTAF 440

Query: 444 FFNRVNKIYGPKEASEVEGQNYKGA 468
               +  + G ++ + VE  +  GA
Sbjct: 441 ELLVLGMLEGKEKQTYVENASATGA 465


>gi|239814526|ref|YP_002943436.1| type II and III secretion system protein [Variovorax paradoxus
           S110]
 gi|239801103|gb|ACS18170.1| type II and III secretion system protein [Variovorax paradoxus
           S110]
          Length = 504

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 124/385 (32%), Positives = 204/385 (52%), Gaps = 39/385 (10%)

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-I 136
           DV + SP  ++  G+  G  NV+L   DG   +  D+++  D   L+  L   + + N I
Sbjct: 122 DVTLLSPTDLFFRGRQAGSMNVVLQSVDGTCYIK-DVIVTIDPGALQSKLAELMPEENHI 180

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           RV     ++VL G +         + L+  +           +  KKV+NLL +    QV
Sbjct: 181 RVRSAEKSIVLTGEISDALKLDDVMSLAMAY----------GADGKKVVNLLRVTAPQQV 230

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD--RF 254
            L+V IAEV + +L ++G +  ++ +  G   S++      F+S GG     G+L+  R 
Sbjct: 231 MLEVKIAEVSKTLLDRLGARVGLSRTGGGGRDSYS--LISSFLSGGG-----GLLEAIRI 283

Query: 255 SFETV-LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--TSVTTHD 311
              +V +   +    +R LAEP + AISGQ ASF SGG+       S+ G   T++T  +
Sbjct: 284 GRTSVGIDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQSAAGGGGTNITLEE 343

Query: 312 --YGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRKADTTV 360
             +G+ + FTPTVL+ GR+ L++ +EVS+          V GV A  +PS  VR+ADTTV
Sbjct: 344 KEFGIGVKFTPTVLNGGRVNLKMISEVSDLSQTGSPFTTVTGVTA-VLPSLTVRRADTTV 402

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +L  G + V+AGL+K ++ +  +  P L ++P++GALFR++ F  ++TE+    TP LV+
Sbjct: 403 QLNDGQSFVIAGLIKSNVTESIKRYPGLGEVPVMGALFRSTEFQNDQTELMFVITPRLVR 462

Query: 421 PVAMRDLSR-PDDHYSVEDDAKAFF 444
           P+A  +  R P D++ V   A+ + 
Sbjct: 463 PLA--EAPRVPTDNHVVPSRAEVYL 485


>gi|217978832|ref|YP_002362979.1| type II and III secretion system protein [Methylocella silvestris
           BL2]
 gi|217504208|gb|ACK51617.1| type II and III secretion system protein [Methylocella silvestris
           BL2]
          Length = 530

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 136/414 (32%), Positives = 203/414 (49%), Gaps = 39/414 (9%)

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           ADV+  S R +Y+ GK VG  NV +   D K +  +D+ +  DI ++   +R       I
Sbjct: 95  ADVLPMSDRVIYIQGKRVGTTNVSIFDKDKKLIGVIDLEVTLDIQNIAAKVRSGTDSRGI 154

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           RV   +D +VL G  R   D+ RAV ++++ ++ +   +  +   K V+N +++A   QV
Sbjct: 155 RVSSNNDQIVLSGEARNAVDADRAVSIAKSMVT-TADGKPPDDPGKFVINAMSVAAAQQV 213

Query: 197 TLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPS-------KSF 230
            L+V   EV R   + IG                      S  G S  P+       ++ 
Sbjct: 214 LLRVRFVEVNRIAERDIGVNWFGAANKTQTAGVNTGNGIASQVGQSLTPTPGGIPLFQTL 273

Query: 231 AADFGGKFVSEGG-DFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           A    G   S G   F V  + L   + + ++ ALE+    R LAEP L A+SG +ASF 
Sbjct: 274 ATLVPGGLASTGSLPFGVGLIKLAGGNVDLLISALEKKGQARRLAEPDLIALSGDTASFL 333

Query: 289 SGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIG 342
           +GG++   +V SS+G T V T   + YGV L F PTVL+ G I LR+   VSE     + 
Sbjct: 334 AGGEYPVPSVQSSSGTTPVITTQYYPYGVQLTFIPTVLANGIINLRLNPSVSELDYKNVV 393

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           V AG  +PS   R+A TT+EL  G +  +AGLL+ D       IP L  +P+LGALF + 
Sbjct: 394 VTAGFAIPSITKREARTTIELRDGQSFAIAGLLQSDSTHDVNQIPWLGSVPVLGALFSSK 453

Query: 402 RFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNR--VNKIY 452
            + + ET++ +  TP LV P A  + ++ P D     +D   F   R  V K Y
Sbjct: 454 SYQQNETDLVVIVTPHLVAPAAPGQVVATPFDKTLPANDVDFFVMGRPEVRKQY 507


>gi|167624205|ref|YP_001674499.1| type II and III secretion system protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167354227|gb|ABZ76840.1| type II and III secretion system protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 478

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 207/416 (49%), Gaps = 21/416 (5%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           ++I I  ++V++L  P+    V V +P+ AD+ +     +Y+ GK +G  N+++   + +
Sbjct: 35  QRIPIFKSRVLMLNGPI--HRVSVGNPSIADIKLLPNDELYILGKQLGSTNIMIWDKNEQ 92

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
               +DI +  D+  L+  L +F+    + V+     ++L G    +Q    AVEL++ +
Sbjct: 93  LARIMDIEVTHDLNGLKTRLHQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGY 152

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
              +      + +  KV+N++ I G+ QV L+V +AEV+R++ +Q   +  I    S  S
Sbjct: 153 AEAAA----GDRAPSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFLIFNQGSNLS 208

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISG 282
                  GG      G    KG+  ++          L   ++    + LAEP +TA+SG
Sbjct: 209 GGVIGGGGGFDPGSIGGVDGKGLFAQYINGDLMMNFALDVAKQNGLAKVLAEPNVTAMSG 268

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
           QSA F SGG+     V    G T++   DYGV + F PTVL  G+I L +   VSE    
Sbjct: 269 QSAEFLSGGEFPIP-VPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTA 327

Query: 339 ---PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
               + G  +  +  PS   R   TTVEL  G TI ++GL+ D +++  + +P L  +P+
Sbjct: 328 NGFSISGNTSTSLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPV 387

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           LG LF +  F   ++E+ I  TP LV+    +D+S P D + +  D + +   +++
Sbjct: 388 LGQLFTSKSFQSGQSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLS 443


>gi|150377247|ref|YP_001313842.1| type II and III secretion system protein [Sinorhizobium medicae
           WSM419]
 gi|150031794|gb|ABR63909.1| type II and III secretion system protein [Sinorhizobium medicae
           WSM419]
          Length = 466

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 122/426 (28%), Positives = 213/426 (50%), Gaps = 20/426 (4%)

Query: 33  NAAVINISDVEIGKG--KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
           ++A  N   VEI     + I +   K + ++      ++++ DP  A V   + R+ Y+ 
Sbjct: 26  SSASANGDSVEISSNFSRSIRVAKGKTVTIRAVQRFDEIVIGDPEIATVTPLTDRSFYIL 85

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           G  +G  +V +   +   +  +DI +  D   L  T+R+ +  SN++V   +  +VL G 
Sbjct: 86  GNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIRQSVPGSNVKVTSANGRIVLSGS 145

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
                 + +A +++  F           +  ++++N + I    QV L V   E+ RD+ 
Sbjct: 146 ATDAVAATQAEQIASRF-----------AGDEEIINSVKITSSQQVQLNVRFVEINRDVG 194

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
           K++G + S   + S  S  F +       +  G      + + +S +  + ALE     R
Sbjct: 195 KELGTRISAAYAWSNGSVEFNSRPRATSNTPAGSLIGSLIGEGYSVDVAIDALEDRGMAR 254

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP L A SG+++SF +GG+     VS   G  +V+   +GV L FTPTVLS G I L
Sbjct: 255 RLAEPNLIARSGETSSFLAGGEFPIP-VSEDDGQIAVSYKKFGVGLDFTPTVLSDGLIAL 313

Query: 331 RIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I+ EVS         V    +P + VR+A T+V+L SG + ++AGLL+ +   + + +P
Sbjct: 314 DIEPEVSAIDNTASYRVRNISIPGFSVRRARTSVDLKSGQSFMIAGLLQSENNLITQRVP 373

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFF 445
            L ++PILGALF +  + R ET++ I  TP LVKP+  ++ ++ P D      +A+ FF 
Sbjct: 374 GLGQLPILGALFSSKAYQRRETDLVIIVTPHLVKPMDPLKKVASPSDRTKRPTEAE-FFL 432

Query: 446 NRVNKI 451
             ++++
Sbjct: 433 GNIDEV 438


>gi|56477528|ref|YP_159117.1| outer membrane channel protein [Aromatoleum aromaticum EbN1]
 gi|56313571|emb|CAI08216.1| probable outer membrane channel protein,probably involved in pilus
           assembly [Aromatoleum aromaticum EbN1]
          Length = 566

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/413 (30%), Positives = 204/413 (49%), Gaps = 60/413 (14%)

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-S 134
           + DV++ SP  +YL GK+VG  NV+L+   G     LD+ +  D+  ++  L   + D +
Sbjct: 118 QVDVLLLSPNEIYLLGKSVGSTNVVLVDRSGG-CTALDVTVAMDVTSVQGALTALLPDET 176

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
            I+V    D++VL G V       RAVE++  ++      +  N  + +V+N+L++    
Sbjct: 177 GIKVSSAYDSLVLTGTVSDATKVDRAVEIASAYVRDGDGGE--NGRNARVLNMLSVGAPQ 234

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSK-------SFAADF 234
           QV L+V +AEV + ++ + G   S             ++G   G S        +  A  
Sbjct: 235 QVMLEVKVAEVSKAVMDRFGIDFSRAYAAGDGTMIRFLSGVFGGKSPVGGQVSGTVGARV 294

Query: 235 GGKFVSE-------------------GGDFSVKGVLDRFSFETVL--HALERATAIRTLA 273
           GG  V                     GGD + K  L   S  T++   A +    ++ LA
Sbjct: 295 GGGIVDSISNASGTSAITAPIGDATIGGD-ATKVPLISGSNSTLIGVDAQKSDGLVKILA 353

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGL 330
           EPT+ AISGQ  SF +GG+ ++  VS + G T   T    ++GV + FTPTVL  GRI L
Sbjct: 354 EPTVMAISGQEGSFLAGGK-IFIPVSQNDGGTRTVTLEEKEFGVSVKFTPTVLEGGRINL 412

Query: 331 RIQTEVSE--------PVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            ++ EVSE           GVN    +PS+  R+A TTV+L  G +  + GL+K++    
Sbjct: 413 AVRPEVSELNREGVGLTAPGVNGLAILPSFTTRRAFTTVQLRDGQSFAIGGLIKNNTTTN 472

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            +  P L ++P++GALFR++ F  + +E+    TP LVKP+   D + P D+Y
Sbjct: 473 IKAFPFLGELPVIGALFRSTEFQTDRSELVFVITPRLVKPLP-EDYALPTDNY 524


>gi|239908021|ref|YP_002954762.1| bacterial type II and III secretion system protein family protein
           [Desulfovibrio magneticus RS-1]
 gi|239797887|dbj|BAH76876.1| bacterial type II and III secretion system protein family protein
           [Desulfovibrio magneticus RS-1]
          Length = 528

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 227/465 (48%), Gaps = 73/465 (15%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
           ++ V +    ++++ + K +ILQ   D+  V V+ P  AD V+ SPR +Y+ G+  G  N
Sbjct: 34  VAPVAVRAAPRLALTIGKSVILQSDADIARVSVAQPDVADFVLLSPRQIYVTGRAPGITN 93

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDS 157
           + L     K     D+ +  D + L+  L   +  ++ I V    D++ L G VR  +  
Sbjct: 94  LTLWDKGDKIRAVYDLDVAPDASRLKKMLHDVMPGETGIEVLASQDSIALSGTVRDAESL 153

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--- 214
           ++A+ L+E +            + KKV+NLL+++G  QV L+V +AE+ + ++ ++G   
Sbjct: 154 KKALSLAEVY------------APKKVLNLLSVSGVQQVMLEVRVAEMSKSVVNRMGINL 201

Query: 215 -------FQHSITGS---------------------------SSGPSKSFAADFGGKF-- 238
                  F +++ G                            S G S + +A    +F  
Sbjct: 202 NAVGDGNFGYTLLGGLSTLADTVFNIDNVQNAYKYSTIKFNGSDGSSSTESATIQTRFRE 261

Query: 239 -----------VSEGGD---FSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                      +S+G     FS   G     +   VL  L++   ++ LAEP L  ++GQ
Sbjct: 262 FNQPEQSKTVGLSQGTAAMRFSTNWGGAGNTTMTAVLDLLKQNGLVKILAEPNLVCLNGQ 321

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339
           SA F +GG+ +   V S  G TS+   ++GV L FTPTV     I L++  EVS+     
Sbjct: 322 SAKFLAGGE-IPVPVPSGLGTTSIEWKEFGVGLKFTPTVAGE-VISLQVNPEVSDLDYTR 379

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            I +++ ++P+   R+A T+VEL +G T  +AGLLK++ ++  +  P +  IP+LG LF+
Sbjct: 380 AIKLDSFEIPAVLTRRASTSVELKNGQTFAIAGLLKEEGRESVDKYPWIGDIPVLGNLFK 439

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +S + ++++E+ I  T  LVKP+  +D+  P D     DD + F 
Sbjct: 440 SSSYQKDQSELVILITAHLVKPLNKKDMILPTDGVHEPDDLEFFL 484


>gi|148253058|ref|YP_001237643.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
 gi|146405231|gb|ABQ33737.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
          Length = 496

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 213/438 (48%), Gaps = 37/438 (8%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           ++IS+  +K   +++       LV  P  ADV+  S R +Y+ GK +G  NV L   D  
Sbjct: 40  RQISVTRDKSRTIKLDKPFASALVGAPDIADVLPMSDRIVYIQGKKIGTTNVTLFDQDKN 99

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            +  + + +  DI ++   +R       IRV   ++ +VL G  R   D+++AV ++   
Sbjct: 100 VIGVIGLEVTIDIQNIASKIRSGTNSPGIRVSSSNNQIVLSGEARDAVDAEKAVAIARGM 159

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQHSITG--- 221
            +            K V+N + +A   QV L+V   EV R   ++IG   F  + +G   
Sbjct: 160 ATPP----EGKDPEKYVINAMRVAASQQVMLRVRFIEVSRQAEREIGVNWFGANASGTRG 215

Query: 222 --------SSSGPSKSFAA--------DFGGKFVSEGGDFSVKGVLDRF-SFETVLHALE 264
                   S +GP+ + A          F G  +S      +  + ++  S + ++ ALE
Sbjct: 216 INTGTGAISQAGPTATSAGVPVFNTIGTFAGSTLSAPFGVGLFNLANKGGSVDVLITALE 275

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPT 321
           +    R LAEP L A+SG +ASF +GG++   +V SS+G T V T     +GV L F PT
Sbjct: 276 KKGLARRLAEPDLVALSGDTASFLAGGEYPVPSVQSSSGTTPVITVLYKPFGVQLTFVPT 335

Query: 322 VLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VL+ G I LR+   VSE      + ++   +P+   R+A T +EL  G +  +AGLL+ D
Sbjct: 336 VLASGIINLRLTPSVSELDYTNAVAISGTLVPALSKREARTAIELRDGQSFAIAGLLQSD 395

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSV 436
             +    +P L  +P+LG LFR++ + ++ET++ +  TP LV P A  + L+ P D    
Sbjct: 396 NLRDVGQLPWLGSVPVLGTLFRSTSYQQKETDLVVIVTPHLVAPAAPGQALATPFDKQLP 455

Query: 437 EDDAKAFFFNR--VNKIY 452
            +D   F   R  V K Y
Sbjct: 456 GNDVDLFLMGRPEVRKQY 473


>gi|212635453|ref|YP_002311978.1| Flp pilus assembly protein [Shewanella piezotolerans WP3]
 gi|212556937|gb|ACJ29391.1| Flp pilus assembly protein [Shewanella piezotolerans WP3]
          Length = 479

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 206/428 (48%), Gaps = 44/428 (10%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           +KI I  ++V++L+ PV    V V +P+ AD+ +     +Y+ GK +G  N+++   D +
Sbjct: 35  QKIPIFKSRVLMLEGPV--HRVSVGNPSIADIKLLPNDELYILGKQLGSTNIMIWDKDEQ 92

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
               +DI +  D+  L+  L  F+    + V+     ++L G    +Q    AVEL++ +
Sbjct: 93  LSKIMDIEVTHDLNGLKTRLHEFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGY 152

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--- 224
              +       ++  +V+N++ I G+ QV L+V +AEV+R++ +Q   +  I        
Sbjct: 153 AEAAA----GGTAPSRVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGDHLA 208

Query: 225 --------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
                         G           ++V+  GD  +   LD           ++    +
Sbjct: 209 GGVIGGGGGGFAPGGIGGVDGKGLFAQYVN--GDLLMNFALD---------VAKQNGLAK 257

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP +TA+SGQSA F SGG+     V    G T+V   DYGV + F PTVL  G+I L
Sbjct: 258 VLAEPNVTAMSGQSAEFLSGGEFPIP-VPGENGNTTVEYRDYGVGVKFVPTVLDSGQINL 316

Query: 331 RIQTEVSE-------PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            +   VSE        + G  +  +  PS   R   TTVEL  G TI ++GL+ D +++ 
Sbjct: 317 NLNVVVSEISTANGFTISGNTSTSLVVPSLTKRSTATTVELADGQTIAISGLISDTLREN 376

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
            + +P L  +P+LG LF +  F   ++E+ I  TP LV+P    D+S P D + +  D +
Sbjct: 377 IDKLPGLGDVPVLGQLFTSKSFQNGQSELVILVTPRLVRPFNRNDISLPTDGFVLPSDVE 436

Query: 442 AFFFNRVN 449
            +   +++
Sbjct: 437 FYLLGKLS 444


>gi|157375508|ref|YP_001474108.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis
           HAW-EB3]
 gi|157317882|gb|ABV36980.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis
           HAW-EB3]
          Length = 483

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 114/417 (27%), Positives = 206/417 (49%), Gaps = 23/417 (5%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +L++   +  V V +P   D+ +     +Y+ GK +G  N+++   + + +  +DI I  
Sbjct: 49  VLKLKQAIHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIMVWDKNEQLVDVIDIEITH 108

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D+  L+  L  F+    + V+     +++ G    +Q    AVEL++ +   +  ++  +
Sbjct: 109 DLNGLKTRLHEFLPGEKLGVQTSQGQLLISGQASNLQKMNTAVELAQAYADAASVSKVKS 168

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQHSITG--SSSGPSKSFA 231
           +    V+N++ + G+ QV L+V IAEV++++ +Q       F     G   ++G   +F 
Sbjct: 169 T----VLNMMTVGGDHQVMLEVVIAEVQKEVARQFDSKFFIFNKGDKGFIGTAGAGGTFD 224

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            D      S G  F  + +         L   ++    + LAEP +TA+SGQSA F SGG
Sbjct: 225 LDPAAAIDSRG--FFARYLDGNLMMNFALDVAKQHGLAKVLAEPNVTAMSGQSAEFLSGG 282

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD 347
           +     V  + G+T++   D+GV + F P+VL  G+I L +   VSE      + ++ G 
Sbjct: 283 EFPIP-VPGTNGSTTIQYRDFGVGVKFVPSVLDSGQINLNLNVMVSEVSNANSVTLSGGS 341

Query: 348 -----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                +PS   R   TTVEL  G TI ++GL+ D +++  + +P L  IPILG LF +  
Sbjct: 342 NTALVVPSIVKRTTATTVELADGQTIAISGLISDTLRENIDKLPGLGDIPILGQLFTSKS 401

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           F   ++E+ I  TP LV+P   + +S P D + +  D + +   +++     +E  E
Sbjct: 402 FQSGQSELVILVTPRLVRPFNKKQISLPTDDFVLPSDMEFYLLGKMSHKQSEQEKHE 458


>gi|19749313|gb|AAL98683.1| Y4xJ [Sinorhizobium fredii]
          Length = 411

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 181/384 (47%), Gaps = 44/384 (11%)

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           + +P     + V+DP  AD    S RT+++FGK  G+ ++  +  +G+ +  L +++ + 
Sbjct: 35  VHLPAPAATIFVADPPIADYQAPSNRTIFVFGKKFGRTSLFALDENGEALAELHVVVTQP 94

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           I  L   LR  + D  I V       +L G     +    A  ++E FL           
Sbjct: 95  IGDLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAEVVDIAKRVTEQFLGDG-------- 146

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---G 236
               ++N + +AG  QV L V +AEV R  LK +G   S  G   G  K    + G   G
Sbjct: 147 --APIVNNIKVAGSLQVNLSVRVAEVSRSSLKALGINLSAFGQF-GNFKVGVLNRGAGLG 203

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                GG   +    D  S   VL AL +      LAEP LTA+SG++ASF +GG+    
Sbjct: 204 SATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLAEPNLTAMSGETASFLAGGE---- 259

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352
                                F PTVL    I + ++ EVSE      + VN   +P+  
Sbjct: 260 ---------------------FVPTVLDNNLINIHVKPEVSELSLQGAVQVNGIAVPAVS 298

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+ADT VEL SG + V+ GL++ ++       P L +IPILGALFR+S F +EE+E+ I
Sbjct: 299 TRRADTVVELASGQSFVIGGLIRRNVNNDISAFPWLGRIPILGALFRSSSFQKEESELVI 358

Query: 413 AATPFLVKPVAMRD-LSRPDDHYS 435
             TP++V+P +  + +S P D  +
Sbjct: 359 LVTPYIVRPGSNPNQMSAPTDRMA 382


>gi|167836689|ref|ZP_02463572.1| RhcC2 [Burkholderia thailandensis MSMB43]
          Length = 460

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 217/431 (50%), Gaps = 33/431 (7%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +L++P     V ++DP  ADV V +P+++++ GK  G   +  +G + + +L   I++  
Sbjct: 47  MLKLPEPAGAVFIADPDVADVHVPTPQSVFVLGKKAGTTTLFALGSNNRTILRETIVVNA 106

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L     + ++ +     ++++ G V +  D+   V+  + +L +        
Sbjct: 107 DTPTLQRILDARFPNLHLTLTSAPGSLMVAGHVPSPSDADAVVQTLKPYLHEK------- 159

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++N + +A   QV L+V + E+ R+I +Q+G   S  G+S          F G+ 
Sbjct: 160 ---ETLVNRMTLARPIQVHLRVRVTEIDRNITQQLGINWSAIGASG---NFVGGLFNGRT 213

Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +          S  G FSV G     R+S + VL AL++   I  LAEP LT +SG++AS
Sbjct: 214 LFDPTSRLFNLSPTGAFSVLGGFHTSRYSVDGVLDALDQEGLITMLAEPNLTTMSGETAS 273

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGV- 343
           F +GG+        +TGA ++    +GV L FTPTVL+  RI L+++ EVSE  PV  V 
Sbjct: 274 FLAGGEFPIPVSQDTTGAITIEFKPFGVSLDFTPTVLADNRISLKVRPEVSEIDPVNSVT 333

Query: 344 -NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            N   +P+  VR+ +TTVEL SG +  + GLL+     +   +P L+++P+LG LF +  
Sbjct: 334 SNGIRVPALTVRRVETTVELSSGQSFAIGGLLQSKTSDVLAELPGLARLPVLGKLFSSKN 393

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           +  ++TE+ +  TP++V+PV   +L    D  +       +   R   I    +    + 
Sbjct: 394 YLNDKTEVVVIVTPYVVQPVGPGELRDALDSVTQPSSDIEYVLQRAIGI----DPLSGDL 449

Query: 463 QNYKGAIGFIY 473
               GA GFIY
Sbjct: 450 PRLVGAAGFIY 460


>gi|209546483|ref|YP_002278401.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209537727|gb|ACI57661.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 495

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/428 (29%), Positives = 209/428 (48%), Gaps = 42/428 (9%)

Query: 42  VEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           V +GK  +++++  N  + L       D+++      DVV  S +++++ GK +G  N+ 
Sbjct: 42  VTLGKSVQRVTLPPNATLTLNTGQAFGDLVIGSADMIDVVPLSDKSLFIRGKKIGATNIS 101

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           + G D   +  +D+ +  D + +   +R     + + V   SD + L G+VR   + QR 
Sbjct: 102 VYGDDKSLLGVIDVRVASDFSEVAAAIRSAAPSARVIVANSSDRIRLTGIVRDGVELQRV 161

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           +++++++            S + V+N L ++   QV L+V + E  R   + +G   S  
Sbjct: 162 MDIAQSY------------SDQPVLNQLRVSDSQQVMLEVRVIEASRQTGRDLGIGWSGR 209

Query: 221 GSS----SGPSKSFAADFGGKFV--------SEGGDFSVKGVLDRF------SFETVLHA 262
           G++    +  S+    D  G  V        +  G      ++ +         + V++A
Sbjct: 210 GNNGIGKATTSQGLGVDDNGSLVRTLVDPKGAATGALPFGQLIAKVLEISGGHIDVVINA 269

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVLHFTP 320
           LE+   +R LA+P L A+SG +ASF +GG+   L  T + +T AT      +GV L F P
Sbjct: 270 LEQKGLVRRLAQPNLIAMSGSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKP 329

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD---- 376
            VL  G I L I+ EVSE    +N    P +  R A TTV L  G +  LAGLL+     
Sbjct: 330 VVLDDGLINLEIEPEVSELDPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAK 389

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYS 435
           DIQQL    P L KIPILGALFR++ F ++E+++ I  TP +V+P     DL  P D   
Sbjct: 390 DIQQL----PGLGKIPILGALFRSTSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTR 445

Query: 436 VEDDAKAF 443
             +D + F
Sbjct: 446 SSNDVELF 453


>gi|114799407|ref|YP_759869.1| type II/III secretion system protein [Hyphomonas neptunium ATCC
           15444]
 gi|114739581|gb|ABI77706.1| type II/III secretion system protein [Hyphomonas neptunium ATCC
           15444]
          Length = 432

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/390 (32%), Positives = 189/390 (48%), Gaps = 34/390 (8%)

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           ++V+DP  A+ +  S R+ ++ GK  G   V++    G     +++ ++  +  L   L 
Sbjct: 55  IVVADPEIAEAMPTSNRSFFVRGKKPGGTTVLIYDEAGAIAELIEVEVKLGLDELRGDLG 114

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
           R +    I V  V D V L G V T   +  A++L+E  +               V N L
Sbjct: 115 RLLPGEIIDVYAVHDGVYLDGKVTTAAAADMALQLAERHVPGG------------VANGL 162

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSGPSKSFAADFGGKFVSEG 242
           ++    QV L+V   E  R  +++IGF ++I       G+  G            F + G
Sbjct: 163 SVGQSQQVMLEVRFLEASRKAVREIGFGNTIDANDVVAGTEGGTVSGLLEKTLAVFTNVG 222

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G+          + +  L ALE    IRTLAEP L A+SG +ASF +GG+     VSS  
Sbjct: 223 GE----------NIDVSLRALEEKGVIRTLAEPNLVALSGDTASFLAGGEFPIP-VSSRD 271

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADT 358
              +V    +GV L FTPTVL  G + LR++ EVS  +   G+ A   D+P   VR+ADT
Sbjct: 272 NEVTVEFKKFGVSLDFTPTVLGDGLVNLRVRPEVSALDRGNGIRASNIDIPGVSVRRADT 331

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TVEL  G    +AGLL+++        P L  +PILG+LF + R+ R ETE+ I  TP L
Sbjct: 332 TVELHDGQAFAIAGLLQNNYTNDVRQTPWLGNVPILGSLFSSKRYQRNETELVIIVTPRL 391

Query: 419 VKPVAMRD-LSRPDDHYSVEDDAKAFFFNR 447
           V+P +  + +  P D  S   +A+ F   +
Sbjct: 392 VQPFSHPEAIVSPLDSVSEPTEAELFLLGK 421


>gi|170692564|ref|ZP_02883726.1| type II and III secretion system protein [Burkholderia graminis
           C4D1M]
 gi|170142220|gb|EDT10386.1| type II and III secretion system protein [Burkholderia graminis
           C4D1M]
          Length = 614

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/420 (29%), Positives = 212/420 (50%), Gaps = 33/420 (7%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + + K  ++Q    V++  + +P  A   + SP+T+Y+ G  VG  N+I+ G  G   
Sbjct: 91  VVVPVGKSTLMQTAEPVRNRTLGNPLIAQATMVSPKTLYVVGMAVGTTNMIVQGKSGACE 150

Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +++++  D   L+ +L + + D  NIRV  V+  +VL G V + Q + +A E+++ + 
Sbjct: 151 V-INVVVNADAGGLQTSLSQLMPDEPNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYA 209

Query: 169 SQS------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             +        N   N  S  V+N++++    QV L+V +AEV + +L Q+G   +I G 
Sbjct: 210 RTTLPNPNGAANGNGNGKSATVLNMMSVDSPQQVMLEVKVAEVSKTVLNQLGAAMNIQGG 269

Query: 223 SSGPSKSFAADFGGKFVSE--GGDFSVKGV--LDRFSFETVLHALERATAIRTLAEPTLT 278
                  F + + G  +S    G  S+  V   +   F   + A      ++ LAEP L 
Sbjct: 270 -------FGS-WSGALISSLLAGVSSIVDVNKANNRPFNVAIDAQHGDNLVKILAEPNLV 321

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +SGQ A+F +GG+       S+    S   +   ++GV L FTPTVL+ GRI L++  E
Sbjct: 322 TLSGQEATFLAGGKVFIPIPQSNLNGVSTIILQEEEFGVGLKFTPTVLAGGRINLKVAPE 381

Query: 336 VSE-PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE    GV  G         +P    R+A TTV++  G T  + GL+K +     + IP
Sbjct: 382 VSELSSTGVTVGATNTNNLTVLPLITTRRASTTVQMNDGETFAIGGLIKSNAAGTLKAIP 441

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFF 445
            + ++P+LGALFR++ + ++ TE+    TP LVKP+    +L  P DH    ++A  +  
Sbjct: 442 GVGEVPVLGALFRSTSYQQDRTELVFIITPHLVKPLQTASNLPLPTDHLKTPNEADVYLM 501


>gi|323700359|ref|ZP_08112271.1| type II and III secretion system protein [Desulfovibrio sp. ND132]
 gi|323460291|gb|EGB16156.1| type II and III secretion system protein [Desulfovibrio
           desulfuricans ND132]
          Length = 476

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 207/426 (48%), Gaps = 47/426 (11%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V+  K   IS+ + +  ++    +V  + +   T   +VV SP  +YL    +G   + L
Sbjct: 31  VKSDKPDMISMIIGESTVITTDQNVSRITLGSDTVCSIVVISPTQIYLTANEIGSTTLTL 90

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
              D    +  DI ++ D   L+  +   +  ++N+RV    +++ L G V         
Sbjct: 91  WTGDRVSEI-YDIAVDPDTTRLKRMIYELLPQENNVRVLTSGNSITLSGQVSNATSLSSV 149

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           + L+E             ++  +V+NLL++ G  QV L+V +AE+ R + K++G   +  
Sbjct: 150 LSLAEA------------AAPGRVVNLLSVDGIQQVMLEVRVAEMSRSVTKRLGLNFAAI 197

Query: 221 GSS-------------SGPSKSFAA----DFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           GS+             +     F      +  G +VS  G+ ++ G++D         AL
Sbjct: 198 GSNFSIYSIINNLTSYNNEDNVFELTDNINLAGSYVS--GNTTIHGMVD---------AL 246

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +    +R LAEP LT +SG++A F  GG+ +   + S+ G   +    +G+ L FT TV+
Sbjct: 247 KSNGLVRMLAEPNLTCVSGEAAEFLVGGE-VPIPMPSALGTVGIDYKPFGIALKFTATVM 305

Query: 324 SPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           S GRI L++  EVSE      + V+  ++P+   R+A+T VEL  G + V+AGL+ D ++
Sbjct: 306 SSGRINLQVNPEVSELDYSKALSVSGYEIPTISTRRANTVVELGDGQSFVIAGLISDSLK 365

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
           +     P L ++P+LG+LF +  FN  +TE+ +  T  L KPV M   + P D +   DD
Sbjct: 366 ENAHKFPGLGEVPVLGSLFSSKDFNSNKTELVVLVTAHLAKPVDMATQTLPTDGFREPDD 425

Query: 440 AKAFFF 445
            + + F
Sbjct: 426 REFYLF 431


>gi|261252087|ref|ZP_05944660.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
 gi|260935478|gb|EEX91467.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
          Length = 480

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/431 (29%), Positives = 214/431 (49%), Gaps = 33/431 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           GK +++  +K   + +    + V + DP   D+V+     ++L GK +G  N++     G
Sbjct: 18  GKIVTVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDEVFLIGKKLGSTNLMAWDSRG 77

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + + +++I +  D+  L+  L  F+ D  I+V      ++L G V +      A+ ++ET
Sbjct: 78  QLIESINIEVTHDLNSLKAKLFEFLPDEEIKVHSAQHRLILSGQVSSQSVMNIALRVAET 137

Query: 167 FLS----QSGRNQYANS-SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI-------- 213
           + +      G++  +N  +S  V+NLL I G  QV L+VT+AEV+R ++++         
Sbjct: 138 YSAGKEADKGKSSLSNQVNSTGVINLLTIGGAQQVMLEVTVAEVQRTLVRKFDANFHFFQ 197

Query: 214 --GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERA 266
             G + S  G+S+G       +  G   +  G  S  G+L  F      F   L   ++ 
Sbjct: 198 TSGGEFSWGGTSAGGVIDDVNNVIGPIFNAPGVEST-GLLGTFIDSNTLFTFALDIAKQN 256

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + LAEP LTA+SG  A F +GG+     V S  G T +   +YGV L F PTVLS  
Sbjct: 257 GTAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPSEDGIT-IEYKEYGVGLKFIPTVLSDK 314

Query: 327 RIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           +I L +  +VSE      + +N G       +P    R A +T+EL  G TI +AGLL +
Sbjct: 315 KINLNLAVDVSELATSTTLTLNPGATNGTYVIPPITRRSASSTLELADGQTIGIAGLLSE 374

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           +++ + E +P  S IP+LG +F +  +   ETE+ I  TP L KP+  R ++ P + +  
Sbjct: 375 NVRDVVEEMPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRRRITLPTESFVE 434

Query: 437 EDDAKAFFFNR 447
            +D + +   R
Sbjct: 435 PNDFEYYLLGR 445


>gi|238789148|ref|ZP_04632936.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC
           33641]
 gi|238722680|gb|EEQ14332.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC
           33641]
          Length = 415

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 192/380 (50%), Gaps = 28/380 (7%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           I+    ++  V VS    AD  +    ++ ++ KN G A   L  HD K +    +L+  
Sbjct: 21  IINTQDEINTVFVSAAAIADYELIGKNSIIVYAKNEGVAEFTLFNHDHKAITKSVVLVNN 80

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQ---SGRN 174
            I  +   ++    +SNI +  +  + +L G+V + +     V +  E   S+   + R+
Sbjct: 81  IIPSVHRRIQAEYPESNIDINKIGSSYILTGLVESEEVRDTVVNIIGEAIGSKRINNDRH 140

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
              N++   ++N + ++  +QV +K+TIAEV +D  + IG   S  G S G  + F    
Sbjct: 141 PVGNTNHTNIINKIKLSQSNQVNVKLTIAEVTKDFTENIGINWSTIGESVGSFQLF---- 196

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                     F+ KG+       T++HA+      R LAEP L+ +SG+ ASF  GG+  
Sbjct: 197 ---------KFNAKGI------STLVHAINDNAIARVLAEPNLSVLSGEDASFLVGGE-- 239

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGD-MPSY 351
              V+++   ++V+  ++G+ L+    V    RI + +  EVS       +N GD  PS 
Sbjct: 240 IPIVNTTQNGSAVSYKEFGIKLNIGAKVNDKKRIRIILNEEVSSIGKTFNINGGDSYPSI 299

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           R RKA TT+EL  G + +L GL+  + ++  + IPL+  IP+LGA FRN++  + +TE+ 
Sbjct: 300 RTRKAATTLELGDGESFILGGLISRNERESLKKIPLMGDIPLLGAFFRNAQTEQSQTELV 359

Query: 412 IAATPFLVKPVAMRDLSRPD 431
           + AT  LV PVA +++  PD
Sbjct: 360 VIATVNLVNPVAEKEVELPD 379


>gi|319940440|ref|ZP_08014785.1| type II and III secretion system protein [Sutterella wadsworthensis
           3_1_45B]
 gi|319806066|gb|EFW02815.1| type II and III secretion system protein [Sutterella wadsworthensis
           3_1_45B]
          Length = 530

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 128/464 (27%), Positives = 210/464 (45%), Gaps = 77/464 (16%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           L +  +LQ+P     VLV+ P  A   + SP  ++ FG   G      +   G  +  + 
Sbjct: 80  LKEGALLQLPSAAAKVLVATPGIASYQMPSPDQVFFFGTAAGSTTFYALDEAGAVIAAVQ 139

Query: 114 ILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
           + +E ++  L+  ++R +  ++I  V  +++ +++ G V+T  DS+R  +L E++L  S 
Sbjct: 140 VTVEHNLEKLKADIKRAVPSASIELVPALNNRMIVRGKVKTALDSRRVTQLVESYLVSSA 199

Query: 173 ------------------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
                             +   A   S  V+N L +    QV ++V + EV R +   +G
Sbjct: 200 AAGGPGQGSQQGGQDGGGQGGSAGGQSSPVINQLKVEVSQQVNIQVRVVEVSRSLTHSLG 259

Query: 215 FQ-------------------------HSITGSSSGPSKSFA----------ADFGGKFV 239
           F                          H+   S   P+ SFA           D      
Sbjct: 260 FNWGAVLNTGRGPLFLGNGTSQGLFSTHAANNSHFNPNDSFADGNANIPGLMPDSNTAGA 319

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           + GG F+    + R S   +++A+  +     LAEP LTA+SGQ A+F SGG+     ++
Sbjct: 320 ALGGIFN----MGRMSLGVLINAMSESGFASLLAEPNLTAMSGQPAAFASGGEVPIVIIT 375

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYRVR 354
            ++   ++    +GV+L  TPTVLSP RI + +  EVSE      VI      +P+ RVR
Sbjct: 376 GNS--ITIDYKSWGVILRMTPTVLSPNRIAIHVAPEVSELTSEGQVILSEGSVIPAVRVR 433

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +A+TTVEL SG +  LAG+L+ +  Q   G+P L  +P +G LF   +   E++E+ I  
Sbjct: 434 RAETTVELASGQSFALAGMLRSESSQTVNGVPGLRNLPFVGRLFEYEQTQVEDSELVILL 493

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           T  +V PV+  DL  P    +  D             Y P++AS
Sbjct: 494 TANIVDPVSSGDLRVPGRGINAVDA------------YAPRQAS 525


>gi|148976662|ref|ZP_01813349.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium
           SWAT-3]
 gi|145964013|gb|EDK29271.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium
           SWAT-3]
          Length = 456

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 204/416 (49%), Gaps = 27/416 (6%)

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           V + DP   D+V+     ++L GK +G  N++     G+ + +++I +  D+  L+  L 
Sbjct: 18  VSLGDPEVLDIVILKSNEVFLIGKKLGATNLMAWDARGQLIESINIEVTHDLNSLKAKLY 77

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK----- 183
            F+ D  I V    + ++L G +   Q    A+ ++ET+ +    ++   S S++     
Sbjct: 78  EFLPDETIEVHSAQNRLLLSGQISNQQKMNVAMRIAETYAAGQAADETKESGSEQAAATG 137

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQHSITGSSSGPSKSFAADFGGKF 238
           V+NL++I G  QV L+VT+AEV+R ++++       FQ S +  S G +   A   G   
Sbjct: 138 VINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQTSGSNFSWGGASVPAGVLGATP 197

Query: 239 VSEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           + +    +  G+L  F      F   L   ++    + LAEP LTA+SG  A F +GG+ 
Sbjct: 198 IFDIPTSTDYGILGSFIDSNTLFTFALDVSKQNGVAKVLAEPNLTALSGSKAEFLAGGEF 257

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD-- 347
               V    G T +   +YGV L F PTVLS  +I L +  +VSE      + ++ G   
Sbjct: 258 PIP-VPDDDGIT-IEYKEYGVGLKFIPTVLSDQKINLNLAVDVSEIANSSSLTIDPGTTN 315

Query: 348 ----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +P    R A +T+EL  G TI +AGLL ++++ +   +  +  +PILG LF +  +
Sbjct: 316 ATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDISNKMLGIGDVPILGQLFNSQEY 375

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
              ETE+ I  TP L KPV    ++ P D +   +D + +   R   I  P ++ +
Sbjct: 376 VSGETELVILVTPRLAKPVDRSKVTLPTDAFVDPNDLEYYLLGRSAYIAEPSDSED 431


>gi|288956969|ref|YP_003447310.1| pilus assembly protein [Azospirillum sp. B510]
 gi|288909277|dbj|BAI70766.1| pilus assembly protein [Azospirillum sp. B510]
          Length = 491

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 209/443 (47%), Gaps = 38/443 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + +G ++++ L  P    +V V+DP  ADV   S   +++ G+  G+  V  +    + +
Sbjct: 68  LDVGTSEMVRLSAPAT--NVYVADPEIADVQAASGTVIFVLGRKPGRTTVYALTEGDRVV 125

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           L+ DI +   +A L   +        + V    + +++ G V T   ++  +EL   F  
Sbjct: 126 LHRDIRVIHSLAPLREQITARFPGMPVTVTSAPNRLIVTGEVPTPAIAESVMELVNGFAR 185

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                        KV+N + + G  QVTL+V +AEV R + +++GF     G+      +
Sbjct: 186 ----------PDDKVVNQMAVTGPVQVTLRVQVAEVARSVTQELGFNWE--GAVKIGDFA 233

Query: 230 FAADFGGKFV---------SEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPT 276
            A  FG  F+         S  G  S+ G+L     + +   ++ A++    +  LA+P 
Sbjct: 234 IAPGFGRDFLNATSGAIQRSATGASSLAGILKSSNGKANIAGIVDAMQDQGLVTLLAQPN 293

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQT 334
           L A+SG+ A F +GG+      +  +G+  +      YGV L+F PTVL+P RI L ++ 
Sbjct: 294 LVAMSGKPAMFLAGGEFPIPVSAGDSGSNKIQVEFKQYGVALNFVPTVLAPDRIALTVRP 353

Query: 335 EVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE      + VN   +P+  VR+ +T+VEL SG +  + GLL++  +   +  P L  
Sbjct: 354 EVSELTDVGAVTVNGLTIPALTVRRVETSVELGSGESFAIGGLLQNSNRSSLKKFPGLGD 413

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           +P+LG LFR+ RF   ETE+ +  TP++V P+       P        + +     R   
Sbjct: 414 LPVLGELFRSRRFINNETELVVIVTPYVVNPIQRGPGVIPQRGTKPNREVEELLRRRQQA 473

Query: 451 IYGPKEASEVEGQNYKGAIGFIY 473
           +  P+ A      +Y G  GFIY
Sbjct: 474 LGLPEPAG-----SYYGPAGFIY 491


>gi|149909547|ref|ZP_01898201.1| general secretion pathway protein D [Moritella sp. PE36]
 gi|149807452|gb|EDM67403.1| general secretion pathway protein D [Moritella sp. PE36]
          Length = 432

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 198/386 (51%), Gaps = 40/386 (10%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           ++  V ++DP  AD  V     + +FGK +G  ++I+   +G  + N  ++I + + H++
Sbjct: 30  EIASVFIADPEIADYQVIDANKVVVFGKKIGSTSIIVFDENGDTITNNKLVINKSLVHIQ 89

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD------------SQRAVELSETFLSQSG 172
             ++    ++++ +  V D VVL G+V T Q+            ++++ +    + S   
Sbjct: 90  QQIQLKYPNADVTIYNVGDQVVLSGIVATEQEKDDINIIVGELLNKKSDDYIIQWESTGT 149

Query: 173 RNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
             +Y     K+     ++N + +A   QV +K++IAEV    L+  G ++S  G +SG  
Sbjct: 150 DTKYEMEFMKRRHFAGIVNNIEVAAVKQVNVKLSIAEVSHSFLENFGIEYSSIGQTSGT- 208

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                     FV+    FS   +       +V+ A+   +  + LAEP L+ ISG+SASF
Sbjct: 209 ----------FVNLVTKFSASDI------ASVITAIADDSVGQILAEPNLSVISGESASF 252

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG- 346
             GG+     V+   G T+V   +YGV L     VL   +I L +  EVS      ++G 
Sbjct: 253 LVGGE--LPVVTVVDGTTNVLYKEYGVRLSLMAKVLRDDKIILSLSPEVSTLDNQYSSGT 310

Query: 347 -DMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            ++P+ + R+A TTVEL  G + VLAGLL  +D++ +K+ IP L  IPILGALFR+S   
Sbjct: 311 YNLPALKTRRARTTVELGDGQSFVLAGLLNTEDVESIKK-IPFLGDIPILGALFRSSSTQ 369

Query: 405 REETEIFIAATPFLVKPVAMRDLSRP 430
           R +TE+ I AT  LVKP+    +  P
Sbjct: 370 RNKTELIIVATVNLVKPIHASQVQLP 395


>gi|260771478|ref|ZP_05880403.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio furnissii CIP 102972]
 gi|260613604|gb|EEX38798.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio furnissii CIP 102972]
 gi|315181060|gb|ADT87974.1| Flp pilus assembly protein, secretin CpaC [Vibrio furnissii NCTC
           11218]
          Length = 489

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 211/440 (47%), Gaps = 34/440 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           GK +++  +K   +++      V + DP   D+V+     ++L GK +G  N++     G
Sbjct: 25  GKVVTVPHHKSTYVKLQGAASRVSLGDPEVLDIVMLKADELFLIGKRLGSTNLMAWDRRG 84

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + + +++I +  D+  L+  L  F+ +  I V    + ++L G V + +    A+ L+ET
Sbjct: 85  QLLESINIEVTHDVNSLKAKLYEFLPNETISVHSAQNRLILSGQVSSQEKMNLALRLAET 144

Query: 167 FLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           + S    ++  +S +K+     V+NL++I G  QV ++VT+AEV+R ++++  F  +   
Sbjct: 145 YASGDTADKATDSRNKEAEKTGVVNLMSIGGAQQVMIEVTVAEVQRSLVRR--FDSNFHF 202

Query: 222 SSSGPSKSFAADFGGKFVSE-----GGDFSV-----KGVLDRF-----SFETVLHALERA 266
                  S+ A   G ++ +     G  F+       G+L  F      F   L   +  
Sbjct: 203 FEGNGKFSWGATSAGGYIDDITGVAGPVFNAPTIDSTGLLSTFIDGDTLFTLALDVAKEN 262

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + LAEP LTA+SG  A F +GG+  +     +    ++   +YGV L F PTVLS  
Sbjct: 263 GVAKVLAEPNLTALSGAKAEFLAGGE--FPIPVPNRDGITIEYKEYGVGLKFIPTVLSDK 320

Query: 327 RIGLRIQTEVSEPVI---------GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           +I L +  +VSE            G NA   +P    R A +T+EL  G TI +AGLL +
Sbjct: 321 KINLNLAVDVSEIASSTTLTVSPSGTNAAYYIPPITRRSAASTLELADGQTIGIAGLLSE 380

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           +++      P +  IP+LG LF +  +   ETE+ I  TP L KP+    +  P D +  
Sbjct: 381 NVRDSVSKFPGIGDIPVLGQLFNSQEYVSGETELVILVTPRLAKPIDRSKVVLPTDAFVE 440

Query: 437 EDDAKAFFFNRVNKIYGPKE 456
             D K +   +   I GP++
Sbjct: 441 PTDLKYYLLGQGAYIAGPRD 460


>gi|86360580|ref|YP_472468.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42]
 gi|86284682|gb|ABC93741.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42]
          Length = 495

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/421 (30%), Positives = 206/421 (48%), Gaps = 41/421 (9%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + +++  N+ + L       D+++      DVV  S +++++ GK  G  N+ + G D  
Sbjct: 49  QHVTLPPNETLTLNTGQPFGDLVIGSADMIDVVPLSDKSLFIRGKKTGATNISVYGDDKS 108

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            +  +DI +  D + +   +R     + +RV   +D + L G VR   + QR +E+++++
Sbjct: 109 LLGVIDIRVASDFSEVASAIRSAAPSARVRVINSNDRIRLTGFVRDGIELQRVMEIAQSY 168

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---- 223
                       S + V+N L ++   QV L+V + E  R   + +G   S  G++    
Sbjct: 169 ------------SDQPVLNQLRVSDSQQVMLEVRVIEASRQTGRDLGIGWSGYGNNNRIG 216

Query: 224 -SGPSKSFAADFGG--------KFVSEG----GDFSVKGV-LDRFSFETVLHALERATAI 269
            +  S+  A D G         K  + G    G    K + +     + V++ALE+   +
Sbjct: 217 KATTSQGIAVDDGSLARTLLDPKGAATGALPFGQLIAKVLEISGGHIDVVINALEQKGLV 276

Query: 270 RTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           R LA+P L A+SG +ASF +GG+   L  T + +T AT      +GV L F P VL  G 
Sbjct: 277 RRLAQPNLIAMSGSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGL 336

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD----DIQQLKE 383
           I L I+ EVSE    +N    P +  R A TTV L  G +  LAGLL+     DIQQL  
Sbjct: 337 INLEIEPEVSEIDPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQL-- 394

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKA 442
             P L +IP+LGALFR++ F ++E+++ I  TP +V+P     DL  P D     +D + 
Sbjct: 395 --PGLGQIPVLGALFRSTSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVEL 452

Query: 443 F 443
           F
Sbjct: 453 F 453


>gi|209809170|ref|YP_002264708.1| type II/III secretion system protein [Aliivibrio salmonicida
           LFI1238]
 gi|208010732|emb|CAQ81123.1| type II/III secretion system protein [Aliivibrio salmonicida
           LFI1238]
          Length = 445

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 198/388 (51%), Gaps = 36/388 (9%)

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           + V  D+  V +SDP  AD  V   R + ++GK++G ++V++ G  G  + N  I++ + 
Sbjct: 40  ISVEQDISSVFLSDPKIADYQVIDKRKIVIYGKSIGSSSVLIFGEKGNTLSNKKIMVNKS 99

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--------------SQRAVELSE 165
           +A ++  +     D+ + +  V + VVL+G V T Q+              S++  +  +
Sbjct: 100 LATIQQYISVKYPDTAVDIFNVGEQVVLNGTVSTEQEKDEINGIVGELLEKSRKDFQFEQ 159

Query: 166 TFLSQSGRNQYANSSSKK-VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
               Q    Q+      + V+N + +A   QV +K++IAEV +  L+QIG Q+   G+S 
Sbjct: 160 DMEDQDYEIQFMERHEYEGVVNNIVVATTKQVNVKISIAEVSQSFLEQIGIQY---GTS- 215

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                  A   G FV     FS   ++      +V+ A+   +  + LAEP L+ ISG+S
Sbjct: 216 -------ASVPGVFVQPLTSFSSSDIM------SVITAIGNDSVGQILAEPNLSVISGES 262

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342
           ASF  GG+     V++   +T+V   ++GV L     V    +I L +  EVS  +    
Sbjct: 263 ASFLVGGE--LPVVTTVNNSTNVVYKEFGVRLDLMAKVKKDDKITLSLVPEVSSLDTQYE 320

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            ++ ++P+ + R+A TTVEL  G + VL GLL  + ++  + +P +  IPILGALFRNS 
Sbjct: 321 NDSYNLPALKTRRARTTVELGDGQSFVLGGLLNSEDKESLQKVPFIGDIPILGALFRNSV 380

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430
             R +TE+ I AT  LV+P+    +  P
Sbjct: 381 TQRNKTELIIVATVNLVQPIHPSQIQLP 408


>gi|197106459|ref|YP_002131836.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1]
 gi|196479879|gb|ACG79407.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1]
          Length = 484

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/406 (30%), Positives = 200/406 (49%), Gaps = 32/406 (7%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           VE GKG+        +I L  P     V ++DP  ADV V SP  +Y+ GK  G  ++  
Sbjct: 39  VEAGKGR--------LIRLDRPAAT--VFIADPKIADVQVKSPTLVYVLGKAPGATSLFA 88

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +    + + +L + +  D A L+  L+R   +S I+VE V   ++L G   +  +    +
Sbjct: 89  LDAGERMIADLAVNVGIDTARLDQALKRHAPNSQIQVESVDGALILSGKAGSAAEGADIL 148

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG------- 214
            ++  F+   G      + + +++N + +   +Q+ L V +AEV +   + +G       
Sbjct: 149 RIAAEFVPGEG-----EARAGRLINRIVVEQPNQINLHVRVAEVSKQAREVLGVNWDAMG 203

Query: 215 -FQHSITGSSSGPSKSFAADFGGKFVSE--GGDFSVKGVLD-RFSFETVLHALERATAIR 270
                + G ++G  + F      +  S   G D  V    D       ++ AL++   ++
Sbjct: 204 LLGEGMVGLATG-RQIFTNPASRETFSRLNGTDTIVGSYQDGDLDLNVLVDALKQKGLVK 262

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP LTA+SG+ ASF +GG++            ++    +GV L F  TVL  GRI L
Sbjct: 263 VLAEPNLTAVSGEPASFLAGGEYPIPVPQRGEDLITIDYKQFGVSLSFVATVLDGGRISL 322

Query: 331 RIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            ++ EVS+      I V    +P+   R+A+TTVEL SG +  +AGLL++   +    +P
Sbjct: 323 NVRPEVSQLSEAGAITVQGLTVPALTTRRAETTVELGSGQSFAIAGLLQNTSNETLRKLP 382

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
            L  IP+LG LFR+  F + E+E+ I  TP+LVKP A R L+ P D
Sbjct: 383 GLGDIPVLGNLFRSKEFQKNESELVIIVTPYLVKP-ASRTLATPAD 427


>gi|209515951|ref|ZP_03264812.1| type II and III secretion system protein [Burkholderia sp. H160]
 gi|209503609|gb|EEA03604.1| type II and III secretion system protein [Burkholderia sp. H160]
          Length = 431

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 192/386 (49%), Gaps = 25/386 (6%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +L +P     V V+DP  ADV V +P T+++ GK  G   +  +G   + +L   +++  
Sbjct: 22  MLHLPEAAVAVFVADPDVADVHVPTPETVFVLGKKAGTTTLFALGAHNRTILRETVVVSA 81

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   ++  L        + +     ++++ G V     +   ++    +L          
Sbjct: 82  DTPSIQRMLDARFPQFQLTLTAAPGSLMVAGRVPDAAAADAVMQSLTPYLHDK------- 134

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++N L +    QV L+V I EV R++ +Q+G   +  G S          F G+ 
Sbjct: 135 ---ETLVNRLTLTRPIQVHLRVRITEVDRNVTQQLGINWNALGQSG---NFIGGLFNGRA 188

Query: 239 ------VSEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                 +S  G FS+ G     +++ + VL AL++   I  LAEP LTA+SG++ASF +G
Sbjct: 189 GSATTTLSSTGAFSILGAFQAGKWAIDGVLDALDQEGLITMLAEPNLTAMSGETASFLAG 248

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346
           G+         T + ++    YGV L FTPTVL+  RI L+++ EVSE      + +++ 
Sbjct: 249 GEFPIPVPQGQTNSITIEFKPYGVSLDFTPTVLADNRISLKVRPEVSELDTTNGVTIDSI 308

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P+  VR+ +TTVEL SG +  + GLL+ +   +   +P L K+P+LG LF +  +   
Sbjct: 309 KVPALTVRRVETTVELSSGQSFAIGGLLQSNTSDVLAELPGLGKLPVLGKLFSSKSYLNN 368

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDD 432
           ++E+ +  TP++V+P     L +P D
Sbjct: 369 KSEVVVIVTPYIVQPAEPGRLRQPID 394


>gi|323499921|ref|ZP_08104880.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326]
 gi|323315162|gb|EGA68214.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326]
          Length = 487

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 217/451 (48%), Gaps = 36/451 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           GK + +  +K   + +    + V + DP   D+V+     ++L GK +G  N++     G
Sbjct: 25  GKIVKVPHHKSTHVTLAAKAKRVSLGDPEVLDIVMLKSDEVFLIGKKLGSTNLMAWDSRG 84

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + + +++I +  D+  L+  L  F+ +  I V    + ++L G +       +A+ ++ET
Sbjct: 85  RLIESINIEVTHDLNSLKAKLYEFLPNEEIEVHSAQNRLILSGQISNQAAMNKALRVAET 144

Query: 167 FLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216
           + +    ++   S S++V     +NL+ I G  QV L+VT+AEV+R ++++       F+
Sbjct: 145 YSAGQEADKENRSLSEQVQKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKFDSNFHFFE 204

Query: 217 HSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERA 266
            +   S  G S     D      G  F + G D +  G L  F      F   L   ++ 
Sbjct: 205 SNGNFSWGGTSAGAIIDDVNGGIGPIFNAPGIDNT--GFLGTFIDGDTLFTFALDIAKQN 262

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
            + + LAEP LTA+SG  A F +GG+  +          ++   +YGV L F PTVLS  
Sbjct: 263 GSAKVLAEPNLTALSGAKAEFLAGGE--FPIPVPDDDGITIEYKEYGVGLKFIPTVLSDK 320

Query: 327 RIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            I L +  +VSE      + +N G       +P    R A +T+EL  G TI +AGLL +
Sbjct: 321 HINLNLAIDVSEIANSATLTLNPGGTNGTYVIPPITRRSASSTLELADGQTIGIAGLLSE 380

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           +++ +  G+P  S IP+LG +F +  +   ETE+ I  TP L KP+    +S P D +  
Sbjct: 381 NVRDVVSGVPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRSKVSLPTDSFVE 440

Query: 437 EDDAKAFFFNRVNKIY--GPKEASEVEGQNY 465
            +D + +   R   I   G  +++E +  N+
Sbjct: 441 PNDFEYYLLGRGAYIAPTGKSKSNESQESNF 471


>gi|327189767|gb|EGE56911.1| cpaC pilus assembly Q protein [Rhizobium etli CNPAF512]
          Length = 495

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/428 (30%), Positives = 210/428 (49%), Gaps = 42/428 (9%)

Query: 42  VEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           V +GK  + +++  N+ + L       D+++      DVV  S +++++ GK  G  N+ 
Sbjct: 42  VTLGKSVQHVTLPPNETLTLNTGQPFGDLVIGSADMIDVVPLSDKSLFVRGKKTGATNIS 101

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           + G D   +  +DI +  D + +   +R     + +RV   +D + L G+VR   + QR 
Sbjct: 102 VYGDDKSLLGVIDIRVASDFSEVSAAIRSAAPTARVRVFNSNDRIRLVGVVRDSIELQRV 161

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           +E+++++            S + V+N L ++   QV L+V I E  R   + +G   S  
Sbjct: 162 LEIAQSY------------SEQPVLNQLRVSDSQQVMLEVRIIEASRQTGRDLGIGWSGY 209

Query: 221 GSS-----SGPSKSFAADFGG--------KFVSEG----GDFSVKGV-LDRFSFETVLHA 262
           G++     +  S+    D G         K  + G    G    K + +     + V++A
Sbjct: 210 GNNNRIGKATTSQGITVDDGNLARTLLDPKGAATGMLPFGQLIAKVLEISGGHIDVVINA 269

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVLHFTP 320
           LE+   +R LA+P L A+SG +ASF +GG+   L  T + +T AT      +GV L F P
Sbjct: 270 LEQKGLVRRLAQPNLIAMSGSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKP 329

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD---- 376
            VL  G I L I+ EVSE    +N    P +  R A TTV L  G +  LAGLL+     
Sbjct: 330 VVLDDGVINLEIEPEVSELDPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAK 389

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYS 435
           DIQQ+    P L +IP+LGALFR++ F ++E+++ I  TP +V+P     DL  P D   
Sbjct: 390 DIQQM----PGLGQIPVLGALFRSTSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTR 445

Query: 436 VEDDAKAF 443
             +D + F
Sbjct: 446 SSNDVELF 453


>gi|312621080|ref|YP_003993808.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
           pilus assembly [Photobacterium damselae subsp. damselae]
 gi|311872801|emb|CBX86892.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Photobacterium damselae subsp. damselae]
          Length = 438

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 188/388 (48%), Gaps = 38/388 (9%)

Query: 62  VPVD--VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           VPVD  +  V +SDP  AD  V     + +FGK +G  N+ +  ++G ++ N  +++ + 
Sbjct: 33  VPVDTEIDSVFISDPAIADYQVIDKNKVVIFGKKIGHTNLFIFDNEGNELANRKVIVNKS 92

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           +  ++  +     D+NI +    + VVL G V   Q       +  T LS+   +   N 
Sbjct: 93  LREIKQYISIKFPDANIDIFNFGEQVVLSGTVSNEQVKDEINNIVGTLLSKKSNDFNFNL 152

Query: 180 SSKK---------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
            +                 ++N + +    QV +K++IAEV    L+QIG Q++  G + 
Sbjct: 153 ETDDQDYEVQFMKQKHFTGLVNNIEVLATRQVNVKLSIAEVSHSFLEQIGVQYNSIGHAP 212

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G            FV+   +FS   +L      +V+ A+      + LAEP L+ ISG+S
Sbjct: 213 GV-----------FVNPLTNFSASDIL------SVITAIGNDGIGQVLAEPNLSVISGES 255

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342
           ASF  GG+     V+     T+VT  ++GV L     V    +I L +  EVS  +    
Sbjct: 256 ASFLVGGE--LPVVTIVDNGTNVTYKEFGVKLELLAKVRKDDKITLSLMPEVSSLDTQYS 313

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +  D+P+ + R+A TTVEL  G + VL GLL  + ++    +P +  IP+LGALFRNSR
Sbjct: 314 NDKYDLPALKTRRARTTVELGDGQSFVLGGLLSTEDKERLNKVPYIGDIPVLGALFRNSR 373

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430
             R +TE+ I AT  LV+P+    +  P
Sbjct: 374 TERNKTELIIVATVNLVQPIHPSQVQLP 401


>gi|317154605|ref|YP_004122653.1| type II and III secretion system protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944856|gb|ADU63907.1| type II and III secretion system protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 478

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 225/476 (47%), Gaps = 52/476 (10%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
           FL +   +V+ L P+  A+  V+N     +     IS+ ++K  IL     V  V ++ P
Sbjct: 13  FLMALAVTVSGLVPLAVADVDVLNTEAPGV-----ISLVVSKSTILTADAPVSRVSLAQP 67

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIA- 132
             A VVV SP  +Y+ G+ +G   + L    G Q+  + D++I  D+  L+  +   +  
Sbjct: 68  ETASVVVLSPTQIYITGRKLGTTTLTL--WSGGQVSGVYDLVITPDVTRLKRMIHEILPR 125

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
           + +++V    +++ L G V    D    + L+E              +  KV+NLL + G
Sbjct: 126 ERSVQVLSSGESITLSGSVSNTGDLTSVLSLAEA------------EAPGKVVNLLRVDG 173

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFGGKFVS------- 240
             QV L+V +AE+ R  LK++G   + T S     S   + S  A+ G   +        
Sbjct: 174 VQQVMLQVRVAEMSRTALKRMGINLAATFSNFTVYSFLNNLSSLANTGSNVIELTDKINS 233

Query: 241 ----EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                 G  +V G+LD         AL+     R LAEP LT +SG+SA F  GG+ +  
Sbjct: 234 VVRYNSGSTNVVGMLD---------ALKAHGLARLLAEPNLTCVSGESADFLVGGE-IPI 283

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352
               + G  S+    +GV L FTPTVLS G I L +  EVSE      +     ++P+  
Sbjct: 284 PKPGALGTVSIEFKPFGVGLEFTPTVLSSGAINLHVSPEVSELDYTNALRYQGYEIPAIS 343

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            RKA T V+L  G +  +AGL+ + +++     P+L  IP+LG LFR+S + + +TE+ I
Sbjct: 344 TRKASTVVDLADGQSFAIAGLISESLKENNHRFPVLGDIPVLGTLFRSSDYQKNKTELVI 403

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
             T  LVKP+ M   + P D +    D + F+   + +  G   A+ V  Q   G+
Sbjct: 404 IVTAHLVKPLDMAGQTLPGDGFKEPTDYE-FYMLGLLEGQGASPAAMVGAQARSGS 458


>gi|269105132|ref|ZP_06157826.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160582|gb|EEZ39081.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 442

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 188/388 (48%), Gaps = 38/388 (9%)

Query: 62  VPVD--VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           VPVD  +  V +SDP  AD  V     + +FGK +G  N+ +  ++G ++ N  +++ + 
Sbjct: 37  VPVDTEIDSVFISDPAIADYQVIDKNKVVIFGKKIGHTNLFIFDNEGNELANRKVIVNKS 96

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           +  ++  +     D+NI +    + VVL G V   Q       +  T LS+   +   N 
Sbjct: 97  LREIKQYISIKFPDANIDIFNFGEQVVLSGTVSNEQVKDEINNIVGTLLSKKSNDFNFNL 156

Query: 180 SSKK---------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
            +                 ++N + +    QV +K++IAEV    L+QIG Q++  G + 
Sbjct: 157 ETDDQDYEVQFMKQKHFTGLVNNIEVLATRQVNVKLSIAEVSHSFLEQIGVQYNSIGHAP 216

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G            FV+   +FS   +L      +V+ A+      + LAEP L+ ISG+S
Sbjct: 217 GV-----------FVNPLTNFSASDIL------SVITAIGNDGIGQVLAEPNLSVISGES 259

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342
           ASF  GG+     V+     T+VT  ++GV L     V    +I L +  EVS  +    
Sbjct: 260 ASFLVGGE--LPVVTIVDNGTNVTYKEFGVKLELLAKVRKDDKITLSLMPEVSSLDTQYS 317

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +  D+P+ + R+A TTVEL  G + VL GLL  + ++    +P +  IP+LGALFRNSR
Sbjct: 318 NDKYDLPALKTRRARTTVELGDGQSFVLGGLLSTEDKERLNKVPYIGDIPVLGALFRNSR 377

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430
             R +TE+ I AT  LV+P+    +  P
Sbjct: 378 TERNKTELIIVATVNLVQPIHPSQVQLP 405


>gi|221067360|ref|ZP_03543465.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
 gi|220712383|gb|EED67751.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
          Length = 520

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 194/380 (51%), Gaps = 31/380 (8%)

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NI 136
           +V + SPR ++  G+  G  NVIL    G   +  D+++  D   L+  L   + +  +I
Sbjct: 100 EVQLLSPRDLFFRGRKSGSMNVILQNAQGACFIK-DVIVTMDPGPLQAKLSELMPEERSI 158

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           RV+   + +VL G +         V L+  +           S SKK++NLL      QV
Sbjct: 159 RVQGADNALVLSGEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQV 207

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            L+V IAE+ + +L ++G   S++G     +   +      F+S GG       L R S 
Sbjct: 208 MLEVKIAEISKTLLDKLG--SSLSGQRVTSNGQNSYTVLSNFLSGGGGLLNAMRLGRGSI 265

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYG 313
              +   +    +R LAEP + AISGQ ASF SGG+       ++T    V T    ++G
Sbjct: 266 S--IDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQTNTNGVPVMTLEEKEFG 323

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNA--GDMPSYRVRKADTTVELPSG 365
           + + FTPTVL   R+ L++ +EVS+      P   +N     +PS  VR+ADTTV+L  G
Sbjct: 324 IGVKFTPTVLGNSRVNLKLVSEVSDLSQTGSPFTSINGVTSVIPSLTVRRADTTVQLNDG 383

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            ++V+AGL+K++I +  +  P L +IP+LGAL R++ F  ++TE+    TP LV+  A+ 
Sbjct: 384 QSLVIAGLIKNNITEAIKRFPGLGEIPVLGALARSTEFQTDQTELMFVITPRLVQ--ALA 441

Query: 426 DLSR-PDDHYSVEDDAKAFF 444
           +  R P D++ V   A+ + 
Sbjct: 442 EAPRVPTDNHVVPSRAEVYL 461


>gi|258621447|ref|ZP_05716481.1| Flp pilus assembly protein [Vibrio mimicus VM573]
 gi|262171232|ref|ZP_06038910.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus MB-451]
 gi|258586835|gb|EEW11550.1| Flp pilus assembly protein [Vibrio mimicus VM573]
 gi|261892308|gb|EEY38294.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus MB-451]
          Length = 488

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 205/430 (47%), Gaps = 30/430 (6%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           I  GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N++   
Sbjct: 22  IQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTNLMAWD 81

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
             G  + +L++ +  D+  L+  L   + D  I+V    + ++L GMV   +    A+ +
Sbjct: 82  SRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMNIALRV 141

Query: 164 SETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIG---- 214
           +ET+ +    ++   S + +V     +NL+ I G  QV L+VT+AEV+R ++++      
Sbjct: 142 AETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNFH 201

Query: 215 -FQHSITGSSSGPSKS-FAADFGGKF--VSEGGDFSVKGVLDRF-----SFETVLHALER 265
            F+ +   S  G S      D GG    V    +    G+L  F      F   L   + 
Sbjct: 202 FFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFALDIAKE 261

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + LAEP LTA+SG  A F +GG+     V    G T +   +YGV L F PT+LS 
Sbjct: 262 NGVAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDKDGVT-IEYKEYGVGLKFIPTILSD 319

Query: 326 GRIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLK 375
            RI L +  +VSE      + +N G       +P    R A +T+EL  G TI +AGLL 
Sbjct: 320 KRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGIAGLLS 379

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           ++++ +   +P    IP+LG LFR+  +   ETE+ I  TP L KPV    ++ P D + 
Sbjct: 380 ENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLPTDAFV 439

Query: 436 VEDDAKAFFF 445
              D K +  
Sbjct: 440 EPSDFKYYLL 449


>gi|258627504|ref|ZP_05722285.1| Flp pilus assembly protein [Vibrio mimicus VM603]
 gi|258580310|gb|EEW05278.1| Flp pilus assembly protein [Vibrio mimicus VM603]
          Length = 488

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 205/430 (47%), Gaps = 30/430 (6%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           I  GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N++   
Sbjct: 22  IQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTNLMAWD 81

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
             G  + +L++ +  D+  L+  L   + D  I+V    + ++L GMV   +    A+ +
Sbjct: 82  SRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMNIALRV 141

Query: 164 SETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIG---- 214
           +ET+ +    ++   S + +V     +NL+ I G  QV L+VT+AEV+R ++++      
Sbjct: 142 AETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNFH 201

Query: 215 -FQHSITGSSSGPSKS-FAADFGGKF--VSEGGDFSVKGVLDRF-----SFETVLHALER 265
            F+ +   S  G S      D GG    V    +    G+L  F      F   L   + 
Sbjct: 202 FFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFALDIAKE 261

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + LAEP LTA+SG  A F +GG+     V    G T +   +YGV L F PT+LS 
Sbjct: 262 NGVAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDKDGVT-IEYKEYGVGLKFIPTILSD 319

Query: 326 GRIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLK 375
            RI L +  +VSE      + +N G       +P    R A +T+EL  G TI +AGLL 
Sbjct: 320 KRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGIAGLLS 379

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           ++++ +   +P    IP+LG LFR+  +   ETE+ I  TP L KPV    ++ P D + 
Sbjct: 380 ENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLPTDAFV 439

Query: 436 VEDDAKAFFF 445
              D K +  
Sbjct: 440 EPSDFKYYLL 449


>gi|262165919|ref|ZP_06033656.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus VM223]
 gi|262025635|gb|EEY44303.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus VM223]
          Length = 488

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 205/430 (47%), Gaps = 30/430 (6%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           I  GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N++   
Sbjct: 22  IQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTNLMAWD 81

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
             G  + +L++ +  D+  L+  L   + D  I+V    + ++L GMV   +    A+ +
Sbjct: 82  SRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMNIALRV 141

Query: 164 SETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIG---- 214
           +ET+ +    ++   S + +V     +NL+ I G  QV L+VT+AEV+R ++++      
Sbjct: 142 AETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNFH 201

Query: 215 -FQHSITGSSSGPSKS-FAADFGGKF--VSEGGDFSVKGVLDRF-----SFETVLHALER 265
            F+ +   S  G S      D GG    V    +    G+L  F      F   L   + 
Sbjct: 202 FFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFALDIAKE 261

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + LAEP LTA+SG  A F +GG+     V    G T +   +YGV L F PT+LS 
Sbjct: 262 NGVAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDKDGVT-IEYKEYGVGLKFIPTILSD 319

Query: 326 GRIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLK 375
            RI L +  +VSE      + +N G       +P    R A +T+EL  G TI +AGLL 
Sbjct: 320 KRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGIAGLLS 379

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           ++++ +   +P    IP+LG LFR+  +   ETE+ I  TP L KPV    ++ P D + 
Sbjct: 380 ENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLPTDAFV 439

Query: 436 VEDDAKAFFF 445
              D K +  
Sbjct: 440 EPSDFKYYLL 449


>gi|323491532|ref|ZP_08096711.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
 gi|323314108|gb|EGA67193.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
          Length = 485

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 213/440 (48%), Gaps = 27/440 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           GK + +  +K   + +    + V + DP   D+V+     ++L GK +G  N++     G
Sbjct: 25  GKVVKVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDELFLIGKKLGSTNLMAWDSRG 84

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + + +++I +  D+  L+  L  F+ + +I V    + ++L G +        A+ ++ET
Sbjct: 85  QLIESINIEVTHDLNSLKAKLFEFLPNESIEVHSAQNRLILSGQISNQAAMNIALRVAET 144

Query: 167 FLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216
           + +    ++   S SK+     V+NL+ I G  QV L+VT+AEV+R ++++       FQ
Sbjct: 145 YSAGRQADKENKSLSKQAEKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKFDANFAFFQ 204

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRT 271
            S +    G + + A   G   + E       G+L  F      F   L    +    + 
Sbjct: 205 SSGSKFKWGGTSTGATVPGATPIFEAPSTGDYGILGSFIDGNTLFTFALDVARQNGTAKV 264

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP LTA+SG  A F +GG+     V    G T +   +YGV L F PTVLS  +I L 
Sbjct: 265 LAEPNLTALSGSKAEFLAGGEFPIP-VPDEDGIT-IEYKEYGVGLKFIPTVLSDKKINLN 322

Query: 332 IQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +  +VSE      + ++ G       +P    R A +T+EL  G TI +AGLL ++++ +
Sbjct: 323 LAVDVSEIANSSSLTLSPGSTNSTYIIPPITRRSASSTLELADGQTIGIAGLLSENVRDV 382

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P  S IPILG +F +  +   ETE+ I  TP L +P+    ++ P D +   +D +
Sbjct: 383 ANEMPGFSDIPILGQMFNSQEYVSGETELVILVTPRLAQPIDRNKVTLPTDSFVEPNDFE 442

Query: 442 AFFFNRVNKIYGPKEASEVE 461
            +   R + +    +AS+ +
Sbjct: 443 YYLLGRGSYLAPASQASQAK 462


>gi|59713403|ref|YP_206178.1| general secretion pathway protein D [Vibrio fischeri ES114]
 gi|59481651|gb|AAW87290.1| general secretion pathway protein D [Vibrio fischeri ES114]
          Length = 440

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 188/383 (49%), Gaps = 38/383 (9%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           DV  V VSDP  AD  V   + + ++GK +GQ++V++   +G  + N  +++ + +  ++
Sbjct: 42  DVGSVFVSDPKIADYQVIEKKKVIVYGKKIGQSSVMVFDRNGHTLANKKLIVNKSLDSIK 101

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL--------SETF-LSQSGRNQ 175
             +     D ++ V  + + VVL G V T Q+      +         E F   Q   +Q
Sbjct: 102 QYISVKYPDVDVDVFNIGEQVVLSGTVSTEQEKDEINNIVGQLLDKDDEKFTFEQDMEDQ 161

Query: 176 ------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                    +  K ++N + +A   QV +K++IAEV +  L+ IG Q             
Sbjct: 162 DYEIQFMERTDYKGIVNNIEVATTKQVNVKISIAEVSQSFLQDIGIQ------------- 208

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           +  D  G F+     FS   ++      +V+ A+   T  + LAEP L+ +SG+SASF  
Sbjct: 209 YGTDAAGVFIQPLTHFSSSDIM------SVITAIGSDTVGQILAEPNLSVVSGESASFLV 262

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGD 347
           GG+     V++   +T+V   +YGV L     V    +I L +  EVS   I    ++ D
Sbjct: 263 GGE--LPVVTTVNNSTNVMYKEYGVRLELMAKVKKDDKITLSLVPEVSSLDIQYENDSYD 320

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P+ + R+A TTVEL  G + VL GLL  + ++  + IP +  IPILGALFR S   R +
Sbjct: 321 LPALKTRRARTTVELGDGQSFVLGGLLSSEDKESLQKIPFIGDIPILGALFRGSSTKRNK 380

Query: 408 TEIFIAATPFLVKPVAMRDLSRP 430
           TE+ I AT  LVKP+    +  P
Sbjct: 381 TELLIVATVNLVKPIHSSQIQLP 403


>gi|264678238|ref|YP_003278145.1| type II and III secretion system protein [Comamonas testosteroni
           CNB-2]
 gi|262208751|gb|ACY32849.1| type II and III secretion system protein [Comamonas testosteroni
           CNB-2]
          Length = 523

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 194/380 (51%), Gaps = 31/380 (8%)

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NI 136
           +V + SPR ++  G+  G  NVIL    G   +  D+++  D   L+  L   + +  +I
Sbjct: 101 EVQLLSPRDLFFRGRKSGSMNVILQNAQGACFIK-DVIVTMDPGPLQAKLSELMPEERSI 159

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           RV+   + +VL G +         V L+  +           S SKK++NLL      QV
Sbjct: 160 RVQGADNALVLSGEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQV 208

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            L+V IAEV + +L ++G   +    +S    +F+      F+S GG       + + S 
Sbjct: 209 MLEVKIAEVSKTLLDKLGASLAGQRITSNGMNTFS--IASNFLSGGGGLLSAMRIGKGSI 266

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYG 313
              +   +    +R LAEP + AISGQ ASF SGG+       S+T    V T    ++G
Sbjct: 267 S--IDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQSNTTGVPVMTLEEKEFG 324

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNA--GDMPSYRVRKADTTVELPSG 365
           + + FTPTVL   R+ L++ +EVS+      P   +N     +PS  VR+ADTTV+L  G
Sbjct: 325 IGVKFTPTVLGGSRVNLKLVSEVSDLSQTGSPFTAINGVTSVIPSLSVRRADTTVQLNDG 384

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            ++V+AGL+K++I +  +  P L +IP+LGAL R++ F  ++TE+    TP LV+  A+ 
Sbjct: 385 QSLVIAGLIKNNITEAVKRFPGLGEIPVLGALARSTEFQTDQTELMFIITPRLVQ--ALA 442

Query: 426 DLSR-PDDHYSVEDDAKAFF 444
           +  R P D++ V   A+ + 
Sbjct: 443 EAPRVPTDNHVVPSRAEVYL 462


>gi|197337022|ref|YP_002157812.1| general secretion pathway protein D [Vibrio fischeri MJ11]
 gi|197314274|gb|ACH63723.1| general secretion pathway protein D [Vibrio fischeri MJ11]
          Length = 440

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 188/383 (49%), Gaps = 38/383 (9%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           DV  V VSDP  AD  V   + + ++GK +GQ++V++   +G  + N  +++ + +  ++
Sbjct: 42  DVGSVFVSDPKIADYQVIEKKKVIVYGKKIGQSSVMVFDRNGHTLANKKVIVNKSLDSIK 101

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL--------SETF-LSQSGRNQ 175
             +     D ++ V  + + VVL G V T Q+      +         E F   Q   +Q
Sbjct: 102 QYISVKYPDVDVDVFNIGEQVVLSGTVSTEQEKDEINNIVGQLLDKDDEKFTFEQDMEDQ 161

Query: 176 ------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                    +  K ++N + +A   QV +K++IAEV +  L+ IG Q             
Sbjct: 162 DYEIQFMERTDYKGIVNNIEVATTKQVNVKISIAEVSQSFLQDIGIQ------------- 208

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           +  D  G F+     FS   ++      +V+ A+   T  + LAEP L+ +SG+SASF  
Sbjct: 209 YGTDAAGVFIQPLTHFSSSDIM------SVITAIGSDTVGQILAEPNLSVVSGESASFLV 262

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGD 347
           GG+     V++   +T+V   +YGV L     V    +I L +  EVS   I    ++ D
Sbjct: 263 GGE--LPVVTTVNNSTNVMYKEYGVRLELMAKVKKDDKITLSLVPEVSSLDIQYENDSYD 320

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P+ + R+A TTVEL  G + VL GLL  + ++  + IP +  IPILGALFR S   R +
Sbjct: 321 LPALKTRRARTTVELGDGQSFVLGGLLSSEDKESLQKIPFIGDIPILGALFRGSSTKRNK 380

Query: 408 TEIFIAATPFLVKPVAMRDLSRP 430
           TE+ I AT  LVKP+    +  P
Sbjct: 381 TELLIVATVNLVKPIHSSQIQLP 403


>gi|323529413|ref|YP_004231565.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
 gi|323386415|gb|ADX58505.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
          Length = 616

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 213/422 (50%), Gaps = 35/422 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + + K  ++Q    V++  + +P  A   + SP+T+Y+ G  VG  N+I+ G  G   
Sbjct: 91  VVVPVGKSTLMQTAEPVRNRTLGNPLVAQATMVSPQTLYVVGMAVGTTNMIVQGKSGACE 150

Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +++++  D   L+ +L + + D  NIRV  V+  +VL G V + Q + +A E+++ + 
Sbjct: 151 V-INVVVNADSGGLQTSLSQLMPDEPNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYA 209

Query: 169 SQS--------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +          N  A + +  V+N++++    QV L+V +AEV + +L Q+G   +I 
Sbjct: 210 RSTLPAANGGTNGNGGAPAKAATVLNMMSVDSPQQVMLEVKVAEVSKTVLNQLGSAMNIQ 269

Query: 221 GSSSGPSKSFAADFGGKFVSE--GGDFSVKGV--LDRFSFETVLHALERATAIRTLAEPT 276
           G        F + + G  +S    G  S+  V   +   F   +        ++ LAEP 
Sbjct: 270 GG-------FGS-WSGALISSLLSGVQSIAAVSKANNRPFNVAVDGQHGDDLVKILAEPN 321

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           L  +SGQ A+F +GG+       S+    S   +   ++GV L FTPTVL+ GRI L++ 
Sbjct: 322 LVTLSGQEATFLAGGKVFIPIPQSNLNGVSTIILQEEEFGVGLKFTPTVLAGGRINLKVA 381

Query: 334 TEVSE-PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            EVSE    GV  G         +P    R+A TTV++  G T  + GL+K +     + 
Sbjct: 382 PEVSELSSTGVTVGATNTNNLTVLPLITTRRASTTVQMNDGETFAIGGLIKSNAAGTLKA 441

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAF 443
           IP + ++P+LGALFR++ + ++ TE+    TP LVKP+ A+ +L  P D     ++A  +
Sbjct: 442 IPGVGEVPVLGALFRSTSYQQDRTELIFIITPHLVKPLQAVANLPLPTDRLKTPNEADVY 501

Query: 444 FF 445
             
Sbjct: 502 LL 503


>gi|86159249|ref|YP_466034.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775760|gb|ABC82597.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 487

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 217/449 (48%), Gaps = 69/449 (15%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           D E+G  + +S+   +  +L V   +  + V++P  AD+ V +P  + L  K +G  ++ 
Sbjct: 30  DREVGAARSMSLEAGQNRLLVVSDQIGRIAVANPDVADLKVVTPYQVLLTAKGIGSTDLT 89

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L   D   ++ + + + R++  L   L+   A   I V    D VV+ G V  ++  +R 
Sbjct: 90  LWDRDNHPLV-IALQVTRNLEGLRKQLKELFAGEKIEVSSAGDLVVISGQVSDVRIPERV 148

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQH 217
            E+             A   + KV NL+ ++G+ QV L+V  AEV R  L+++G   F  
Sbjct: 149 AEV-------------ARLHATKVANLVQVSGQQQVQLEVRFAEVGRTGLREMGVNFFHK 195

Query: 218 SITGSSSGP---SKSFAADF------------GGK----------------------FVS 240
           S  G   G    ++++  DF            G +                      F+S
Sbjct: 196 SDDGKRVGGMTGNRTYPGDFLNTQSNPAIPGTGPRGLWGPGMPPDVPNPAFNNAFSFFLS 255

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           +GG         +F F  +L+ LE++   +TLAEPTL A+SGQ A+F +GG+ L   ++S
Sbjct: 256 QGG---------QFPFSVMLNLLEQSNLAKTLAEPTLVAMSGQEAAFLAGGE-LPIPLAS 305

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356
           + G T+V    +G+ L FTPTV+    I LR++ EVS+      + V    +P    R++
Sbjct: 306 TFGQTAVEWKKFGIQLRFTPTVIGDA-IHLRLKAEVSDLDPTTAVTVGGTTIPGLVSRQS 364

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +TT+ L  G +  +AGL+ D ++     +P+L  IPILGALFR+  + R+ETE+ +  T 
Sbjct: 365 ETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAYQRDETELLVVVTA 424

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
            L KPVA  +L      +   D + A  F
Sbjct: 425 RLAKPVAPHELPPLPTDFENNDPSDAALF 453


>gi|156975620|ref|YP_001446527.1| Flp pilus assembly protein secretin [Vibrio harveyi ATCC BAA-1116]
 gi|156527214|gb|ABU72300.1| hypothetical protein VIBHAR_03353 [Vibrio harveyi ATCC BAA-1116]
          Length = 449

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 194/398 (48%), Gaps = 49/398 (12%)

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           ++V   +  V VSDP   D  V +  T+ +F K VGQA  I+ G   K +L+  I+++ D
Sbjct: 36  IEVKEPISTVFVSDPEIVDYNVVNENTVVVFAKEVGQARFIIYGKSKKVLLSDRIIVDID 95

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA-- 177
           ++ +   ++    + NI+VE V + V + G+V + Q       +  T L +    ++   
Sbjct: 96  LSLVRRQIKLHYPELNIKVESVGNQVAVSGVVESEQQRDDIYRMVATLLGRDKTEKWEET 155

Query: 178 ----------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
                                 N + + ++ L+ +A + QV +K+++A+V     + +G 
Sbjct: 156 QVLEFENEAYDIEEPQSMIFARNMTWEGILELIEVATDQQVNVKISVAQVTETFSQTVGV 215

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
             S  G          AD G     +          D     T++ AL      + LAEP
Sbjct: 216 DWSSVG----------ADVGEFLFQQ---------FDAADLTTLITALGNENVAQVLAEP 256

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            LT ISG+SASF  GG+     + ++    ++T  ++G+ L  T  VL  G+I +R+  E
Sbjct: 257 NLTVISGESASFLVGGE--VPVIVTTNNNINITFREFGIKLDLTAKVLHEGKIRMRLMPE 314

Query: 336 VSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIP 392
           VSE    + +   ++P +  R+A TT+EL  G + VL GL+   D+++LK+ IPLL  IP
Sbjct: 315 VSEVERYIRSAGLEVPQFATRRAMTTIELGDGDSFVLGGLMSSADLEELKK-IPLLGDIP 373

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           +LGA FR +  +R  TE+ I AT  LVKP+  +D+  P
Sbjct: 374 VLGAAFRKASTDRRRTELIIVATVNLVKPMKKKDIQMP 411


>gi|260462607|ref|ZP_05810813.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259031513|gb|EEW32783.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 478

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 208/418 (49%), Gaps = 30/418 (7%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++ + +++ + +QV  ++ D++V D   AD    + RT+Y+ GK  G   V L   D + 
Sbjct: 42  RVFLPMSQSVTIQVNANLGDIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSTDKRS 101

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           +  + I +  D++ +   +R+    S I +  ++  V L G V+     +  +++++   
Sbjct: 102 LGVIQIEVGVDVSDMAQAIRQVSPRSRIEIGSINGKVRLGGHVKDGATLEAIMQVAQ--- 158

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---- 224
                 QY   +   ++N + +    QV L+V + E +R+  + +G      GSS+    
Sbjct: 159 ------QYGPDA---IINSVTVDDSQQVNLEVRVLEAKRNAGRDLGVSFRSRGSSATIFG 209

Query: 225 ---GPSKSFAADFGG---KFVSEGGDFS--VKGVLD-RFSFETVLHALERATAIRTLAEP 275
                +    AD G      +S+   F+  +  ++D     + ++ ALE    +RTLA P
Sbjct: 210 TGIAATTPPGADPGTLVTGLLSKTNPFASLITQIIDSNIKVDLIIEALEAKGVVRTLANP 269

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            LT +SG+ ASF +GGQ   ++V+   G   +    +GV L FTP VL+  +I + +  E
Sbjct: 270 NLTTLSGEPASFNAGGQVPIRSVTKD-GLIQIEYKQFGVNLQFTPIVLADDKIHISLAPE 328

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           VS+     +AGD P +  RK DT VEL  G +  + GLL     +L+  +P L ++P++G
Sbjct: 329 VSDLTGFTSAGD-PIFTNRKLDTVVELRDGQSFAVGGLLSSKTTKLQNQVPWLGQVPVIG 387

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNR--VNK 450
            LFRNS   +EETE+ +  TP +V+PV     L+ P D     +D + F   +  VNK
Sbjct: 388 TLFRNSSNQKEETELVVIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQLEVNK 445


>gi|227819321|ref|YP_002823292.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234]
 gi|227338320|gb|ACP22539.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234]
          Length = 496

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 129/429 (30%), Positives = 215/429 (50%), Gaps = 51/429 (11%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G  +++++  N  I ++      D+++      DVV  S +++++ GK  G  N I +  
Sbjct: 47  GSVQQVTLAPNDTITVRTGKPFGDLVIGSAEMIDVVPLSDQSLFIRGKQTGATN-ISVYD 105

Query: 105 DGKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
           D K ++  +D+ +  D + +   +R     + +RV   +D + L G VR   + QR +E+
Sbjct: 106 DNKALVGVIDVRVAADFSEVASAIRSTAPSAQVRVFNSNDRIRLTGTVRDAVELQRVMEI 165

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           ++++            S++ V+N L +A   QV L+V + E  R   + +G   S  G +
Sbjct: 166 AQSY------------SAEPVLNQLRVAESQQVMLEVRVIEASRQTGRDLGIGWSGQGRN 213

Query: 224 ----SGPSKSFAADFGGKFVSEGGDFS------------VKGVLD--RFSFETVLHALER 265
               +  S+    D  G      GD +            +  VL+      + V++ALE+
Sbjct: 214 GIGKATTSQGITVDDDGNLARTLGDAAGAATGMQPFGQLIAKVLEISGGQIDIVINALEQ 273

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSVTTHDY---GVVLHFTPT 321
              +R LA+P L A+SG++ASF +GG+  +  TV++  GAT  T  DY   GV L F+P 
Sbjct: 274 KGLVRRLAQPNLIAMSGETASFHAGGEVPIQSTVAN--GATLATETDYRPFGVRLTFSPV 331

Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD--- 376
           VL  G I L+I+ EVSE  P I VN    P +  R A TTV L  G +  +AGLL+    
Sbjct: 332 VLDGGLISLKIEPEVSEIDPSISVNGN--PGFISRAASTTVALRDGQSFAMAGLLQSVNA 389

Query: 377 -DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY 434
            D+QQL    P L ++P++GALFR++ F + E+++ I  TP +V+P     DL  P +  
Sbjct: 390 KDVQQL----PWLGQVPVIGALFRSTSFLKRESDLVIVVTPHIVRPSKPGEDLYSPLEQT 445

Query: 435 SVEDDAKAF 443
              +D + F
Sbjct: 446 RSSNDVELF 454


>gi|84386797|ref|ZP_00989822.1| type II and III secretion system protein [Vibrio splendidus 12B01]
 gi|84378325|gb|EAP95183.1| type II and III secretion system protein [Vibrio splendidus 12B01]
          Length = 465

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 220/453 (48%), Gaps = 47/453 (10%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           + +N+  ++++P   + + +S+   A+    +   + +FGK  G A + ++    + +  
Sbjct: 29  VTINEARMIRLPEKAKSIFISNTHIANYQTLTNTKVMIFGKQAGSATITVLNEQERVIYT 88

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ- 170
             I +  +       ++    ++++  E +   + L G V +   +   V L++ +LS  
Sbjct: 89  NKIRVTHNSREFNELVKNKFPEASVNAESLGGKLWLKGRVPSPMMAHNIVSLAKGYLSPI 148

Query: 171 --SGRNQYANS--------------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             S   Q +++                    +  +++N L +   +QV ++V IAEV R+
Sbjct: 149 VGSTEQQESSNSQGNSNNSSSSTNQNQQTQLNDDELINQLVVTMPNQVNIRVKIAEVSRN 208

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
           +  ++G +    GS +G    F+       VS  G  S+  ++D         AL     
Sbjct: 209 VSNKLGIKW---GSIAGGVGQFSFSKLPN-VSSWGKPSITALID---------ALATNGM 255

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           +  LAEP LTA+SG+ A F  GGQ     +++ T  T +   D+GV L+FTPTVLS  RI
Sbjct: 256 MSVLAEPNLTAMSGEDAEFLVGGQVPLPLITADT--TQIEYKDFGVKLNFTPTVLSQNRI 313

Query: 329 GLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKE 383
            L++  EVS   I     +N  + PS+  R A TT+EL SG +  L GLLK +DI+QL++
Sbjct: 314 SLKVNPEVSNISIESQQVINGTNFPSFTTRSASTTIELASGQSFALGGLLKSEDIEQLQK 373

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY-SVEDDAKA 442
            +PL+ +IP+LG+LFR++ F R ETE+ I  T +LV+P     +  P D    + D  + 
Sbjct: 374 -VPLIGEIPVLGSLFRSTEFTRRETELIIIVTAYLVQPTRSDSMPLPTDGLIPLSDVERL 432

Query: 443 FFFNRVNKIYGPKEASEVEGQNYK--GAIGFIY 473
             + R  +     +A+  + Q  +  G  GF Y
Sbjct: 433 LAWPREQQKTSNNKATYTDNQKPRLLGDNGFYY 465


>gi|197123317|ref|YP_002135268.1| type II and III secretion system protein [Anaeromyxobacter sp. K]
 gi|196173166|gb|ACG74139.1| type II and III secretion system protein [Anaeromyxobacter sp. K]
          Length = 484

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 217/449 (48%), Gaps = 69/449 (15%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           D E+G  + +S+   +  +L V   +  + V++P  AD+ V +P  + L  K +G  ++ 
Sbjct: 30  DREVGAARSMSLEAGQNRLLVVSDQIGRIAVANPDVADLKVVTPYQVLLTAKGIGSTDLT 89

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L   D   ++ + + + R++  L   L+   A   I V    D VV+ G V  ++  +R 
Sbjct: 90  LWDRDNHPLV-VALQVTRNLEGLRKQLKELFAGEKIDVSSAGDLVVISGQVSDVRIPERV 148

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQH 217
            E++    S             KV NL+ ++G+ QV L+V  AEV R  L+++G   F  
Sbjct: 149 AEVARLHAS-------------KVANLVQVSGQQQVQLEVRFAEVGRTGLREMGVNFFHK 195

Query: 218 SITGSSSGP---SKSFAADF------------GGK----------------------FVS 240
           S  G   G    ++++  DF            G +                      F+S
Sbjct: 196 SDDGKRVGGMTGNRTYPGDFLNTQSNPAIPGTGPRGLWGPGLPPDVPNAAFNNAFSFFLS 255

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           +GG         +F F  +L+ LE++   +TLAEPTL A+SGQ A+F +GG+ L   ++S
Sbjct: 256 QGG---------QFPFSVMLNLLEQSNLAKTLAEPTLVAMSGQEAAFLAGGE-LPIPLAS 305

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356
           + G T+V    +G+ L FTPTV+    I LR++ EVS+      + V    +P    R++
Sbjct: 306 TFGQTAVEWKKFGIQLRFTPTVIGDA-IHLRLKAEVSDLDPTTAVTVGGTTIPGLVSRQS 364

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +TT+ L  G +  +AGL+ D ++     +P+L  IPILGALFR+  + R+ETE+ +  T 
Sbjct: 365 ETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAYQRDETELLVVVTA 424

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
            L KPVA  +L      +   D + A  F
Sbjct: 425 RLAKPVAPHELPPLPTDFENNDPSDAALF 453


>gi|312883308|ref|ZP_07743034.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368924|gb|EFP96450.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 440

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 132/443 (29%), Positives = 216/443 (48%), Gaps = 61/443 (13%)

Query: 8   FFTMMS-IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
             T++S IF+F SN S A++  I + +A  IN+ +                        +
Sbjct: 11  ILTLLSLIFIFISNCSAAEILNIDQDSAKTINLKN-----------------------SI 47

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
             V + +PT AD  +     + +FG  VG  +VI+ G  G ++ N ++++ + +  L+ T
Sbjct: 48  STVFLVNPTIADYKIIDDNKLVIFGVGVGSTSVIVYGKGGSEIYNTELIVNKSLRLLKQT 107

Query: 127 -LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE--LSETFLSQSGRNQYANSSS-- 181
            L RF  ++ I V  + D VVL G+V + +  ++AV   + E    Q    +Y+++S   
Sbjct: 108 ILARFPGET-ISVSNIGDQVVLDGVVSS-ERVKKAVSRLVGEMLKKQRNVQKYSDASGGN 165

Query: 182 -------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
                   +++N + +   +Q+ +K+T+AEV    L +IG  +S  G  +G         
Sbjct: 166 TQLEYNYHEIINNMKVLSTEQINVKITVAEVASSFLNEIGVSYSEMGGEAG--------- 216

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             KFV++   FS K ++       V+ A+   +    LAEP L+ ISG+ ASF  GG+ +
Sbjct: 217 --KFVNKITHFSAKDIV------AVISAVGNESVGHVLAEPNLSVISGEKASFLVGGE-I 267

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPS 350
              V    G  S++  +YGV L     V     I L +  EVS      V  V     PS
Sbjct: 268 PIGVRDDKGV-SISYKEYGVKLSMIAKVADSENIRLSLFPEVSTIDENHVTKVGQLTAPS 326

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            + R+A+TTV+L  G + VLAGLL+ + ++    +P L  IPI+GALF +S+ +R +TE+
Sbjct: 327 LQTRRAETTVQLKDGQSFVLAGLLRSEERESLSKVPYLGDIPIIGALFSHSKTDRSKTEL 386

Query: 411 FIAATPFLVKPVAMRDLSRPDDH 433
            I AT  LV PV    +  P  H
Sbjct: 387 IIVATVNLVTPVDPDKVKLPGFH 409


>gi|320155489|ref|YP_004187868.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus MO6-24/O]
 gi|319930801|gb|ADV85665.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus MO6-24/O]
          Length = 488

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/429 (29%), Positives = 208/429 (48%), Gaps = 34/429 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N++     G
Sbjct: 25  GKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTNLMAWDSRG 84

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
             + +++I +  D+  L+  L  F+ +  I+V    + ++L GMV T +    A+ ++ET
Sbjct: 85  NLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMNIALRVAET 144

Query: 167 FLSQSGRNQYA---NSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216
           + +    ++     NS  +K  V+NL+ I G  QV L+VT+AEV+R ++++       F+
Sbjct: 145 YAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNFHFFE 204

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-----LDRF-----SFETVLHALERA 266
           ++  GS S  + S            G  F+V G+     L  F      F   L   +  
Sbjct: 205 NN--GSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFALDIAKEN 262

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + LAEP LTA+SG  A F +GG+     V  S G T +   +YGV L F PT+LS  
Sbjct: 263 GVAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDSDGVT-IEYKEYGVGLKFVPTILSDK 320

Query: 327 RIGLRIQTEVSEPVI---------GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           RI L +  +VSE            G NA   +P    R A +T+EL  G TI +AGLL +
Sbjct: 321 RINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGIAGLLSE 380

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           +++ +   +P    IP+LG LF +  +   ETE+ I  TP L KP+    ++ P D +  
Sbjct: 381 NVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLPTDAFVE 440

Query: 437 EDDAKAFFF 445
             D K +  
Sbjct: 441 PSDLKYYLL 449


>gi|27365106|ref|NP_760634.1| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus
           CMCP6]
 gi|27361252|gb|AAO10161.1| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus CMCP6]
          Length = 488

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/429 (29%), Positives = 208/429 (48%), Gaps = 34/429 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N++     G
Sbjct: 25  GKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTNLMAWDSRG 84

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
             + +++I +  D+  L+  L  F+ +  I+V    + ++L GMV T +    A+ ++ET
Sbjct: 85  NLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMNIALRVAET 144

Query: 167 FLSQSGRNQYA---NSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216
           + +    ++     NS  +K  V+NL+ I G  QV L+VT+AEV+R ++++       F+
Sbjct: 145 YAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNFHFFE 204

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-----LDRF-----SFETVLHALERA 266
           ++  GS S  + S            G  F+V G+     L  F      F   L   +  
Sbjct: 205 NN--GSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFALDIAKEN 262

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + LAEP LTA+SG  A F +GG+     V  S G T +   +YGV L F PT+LS  
Sbjct: 263 GVAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDSDGVT-IEYKEYGVGLKFVPTILSDK 320

Query: 327 RIGLRIQTEVSEPVI---------GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           RI L +  +VSE            G NA   +P    R A +T+EL  G TI +AGLL +
Sbjct: 321 RINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGIAGLLSE 380

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           +++ +   +P    IP+LG LF +  +   ETE+ I  TP L KP+    ++ P D +  
Sbjct: 381 NVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLPTDAFVE 440

Query: 437 EDDAKAFFF 445
             D K +  
Sbjct: 441 PSDLKYYLL 449


>gi|297581608|ref|ZP_06943530.1| flp pilus assembly protein [Vibrio cholerae RC385]
 gi|297534015|gb|EFH72854.1| flp pilus assembly protein [Vibrio cholerae RC385]
          Length = 469

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 207/434 (47%), Gaps = 42/434 (9%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSP--RTMYLFGKNVGQANVILIGHDGKQMLN 111
           +N+  I+ V  D+QDV VSDP    VVVH+P  R + + GK++G  +++++G + + + +
Sbjct: 29  VNQNQIITVDGDIQDVFVSDPKI--VVVHAPSSRHVMVSGKDIGSTDLLIMGENAQTLAH 86

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--- 168
             + +  D++ LE  ++    ++NIR       +V+ G V     +   + ++  F    
Sbjct: 87  YKLNVNADLSELERAVQHAFPEANIRFAYSKGAIVVMGEVANPLQAHEVLSMASGFARGL 146

Query: 169 ---SQSGRNQYANSSS-----------------KKVMNLLNIAGEDQVTLKVTIAEVRRD 208
               Q   +  ANS+S                 K V+N L   G  QV + + I E+ R 
Sbjct: 147 QKPEQQTLDMPANSASSGRDSGAAKPGGGIGDYKFVVNQLKTQGSAQVNISIRIVEMERA 206

Query: 209 ILKQIGFQHSITGSSSGPS-----KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
             +Q+G + S  G+    +      +  A  G KF +     ++     +     ++ AL
Sbjct: 207 TSEQLGLRWSSIGNMRWGTWDTLQTALGATPGNKFPTN----TLPSGNGQHGLNVIIDAL 262

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
              + +  LAEP LTA SG++A+F SGG+  +  V +     S+    +G+ L  TPTVL
Sbjct: 263 VENSLVNVLAEPNLTAKSGEAATFMSGGEFPFP-VDNGDDGVSIEFKKFGIALEVTPTVL 321

Query: 324 SPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           S  +I L +  EVS    E  + +   ++P    R+A TT+EL  G +  LAGL++    
Sbjct: 322 SNRQISLTVAPEVSTLSRENSVSIAGVEVPGIETRRATTTIELADGQSFALAGLVRTYQD 381

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVED 438
              E +P L +IPIL   F  + F   E+E+ I AT  LV+P +   +L+ P D Y    
Sbjct: 382 HKVEALPFLGEIPILAPFFSTNSFKNSESELVIIATARLVEPSSDPAELTTPLDRYRPAS 441

Query: 439 DAKAFFFNRVNKIY 452
             +  F +++ + +
Sbjct: 442 RFERLFLHKMGETH 455


>gi|37680844|ref|NP_935453.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
 gi|37199593|dbj|BAC95424.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
          Length = 488

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/429 (29%), Positives = 208/429 (48%), Gaps = 34/429 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N++     G
Sbjct: 25  GKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTNLMAWDSRG 84

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
             + +++I +  D+  L+  L  F+ +  I+V    + ++L GMV T +    A+ ++ET
Sbjct: 85  NLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMNIALRVAET 144

Query: 167 FLSQSGRNQYA---NSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216
           + +    ++     NS  +K  V+NL+ I G  QV L+VT+AEV+R ++++       F+
Sbjct: 145 YAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNFHFFE 204

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-----LDRF-----SFETVLHALERA 266
           ++  GS S  + S            G  F+V G+     L  F      F   L   +  
Sbjct: 205 NN--GSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFALDIAKEN 262

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + LAEP LTA+SG  A F +GG+     V  S G T +   +YGV L F PT+LS  
Sbjct: 263 GVAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDSDGVT-IEYKEYGVGLKFVPTILSDK 320

Query: 327 RIGLRIQTEVSEPVI---------GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           RI L +  +VSE            G NA   +P    R A +T+EL  G TI +AGLL +
Sbjct: 321 RINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGIAGLLSE 380

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           +++ +   +P    IP+LG LF +  +   ETE+ I  TP L KP+    ++ P D +  
Sbjct: 381 NVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLPTDAFVE 440

Query: 437 EDDAKAFFF 445
             D K +  
Sbjct: 441 PSDLKYYLL 449


>gi|295700370|ref|YP_003608263.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1002]
 gi|295439583|gb|ADG18752.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1002]
          Length = 634

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 216/432 (50%), Gaps = 36/432 (8%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           EI     +S+ + K I++ +    ++  + +P  A   + S RT+Y+ G +VG  N+I+ 
Sbjct: 97  EIRDESNVSVAVGKSILVPLVEPARNRTLGNPVVAQATLVSQRTLYVVGMSVGTTNMIVQ 156

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ TL + + +   IRV   +  +VL G V + Q +Q+A+
Sbjct: 157 GRSGACQI-IDVSVGVDAEGLQRTLAQLLPNERGIRVSSAAGNLVLAGRVSSGQAAQQAM 215

Query: 162 ELSETFLSQSGRNQYANSSSK------------------KVMNLLNIAGEDQVTLKVTIA 203
            ++  +       Q  +S++                   +V+N++ +    QV L+V +A
Sbjct: 216 SIAGAYAGAQPTQQDQSSTASFGNGGSISQQSSSVSKGSEVINMMTVDSPQQVMLEVKVA 275

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           EV + +L Q+G   +I G     + +  +      VS G   +V    +R  F   + A 
Sbjct: 276 EVSKTLLNQLGAAVNIQGGFGSWTGALVSSLLAG-VSSG--VAVSKANNR-PFNIAVDAQ 331

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-SSSTGATSVTTHD--YGVVLHFTP 320
           +  +  + LAEP L  +SGQ ASF +GG+       S+ TG +++T  +  +GV L FTP
Sbjct: 332 KSDSLGKILAEPNLVTLSGQEASFLAGGRVFIPVPQSNGTGGSTITLQEEEFGVGLKFTP 391

Query: 321 TVLSPGRIGLRIQTEVSE--PV-IGVNAGD------MPSYRVRKADTTVELPSGGTIVLA 371
           TVL+  R+ L++  EVSE  P  + V A        +P    R+A TTV++  G +  + 
Sbjct: 392 TVLAGSRVNLKVAPEVSELSPTGVTVQATGTSSTAILPLITTRRASTTVQMNDGESFAIG 451

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL++++I    + +P + ++P+LGALFR++ F ++ TE+    T  LVKP+   D   P 
Sbjct: 452 GLIQNNITGALKALPGIGEVPVLGALFRSTSFQQDRTELIFIVTVHLVKPLPPGDYPLPT 511

Query: 432 DHYSVEDDAKAF 443
           D ++   D   +
Sbjct: 512 DSFTGVSDGTVY 523


>gi|299532592|ref|ZP_07045981.1| type II and III secretion system protein [Comamonas testosteroni
           S44]
 gi|298719395|gb|EFI60363.1| type II and III secretion system protein [Comamonas testosteroni
           S44]
          Length = 520

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 192/380 (50%), Gaps = 31/380 (8%)

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NI 136
           +V + SPR ++  G+  G  NVIL    G   +  D+++  D   L+  L   + +   I
Sbjct: 98  EVQLLSPRDLFFRGRKSGSMNVILQNAQGACFIK-DVIVTMDPGPLQTKLSELMPEERGI 156

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           RV+   + +VL G +         V L+  +           S SKK++NLL      QV
Sbjct: 157 RVQGADNALVLSGEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQV 205

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            L+V IAEV + +L ++G   +    +S    +F+      F+S GG       + + S 
Sbjct: 206 MLEVKIAEVSKTLLDKLGASLAGQRITSNGMNTFS--IASNFLSGGGGLLSAMRIGKGSI 263

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYG 313
              +   +    +R LAEP + AISGQ ASF SGG+       S+T    V T    ++G
Sbjct: 264 S--IDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVSQSNTNGVPVMTLEEKEFG 321

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNA--GDMPSYRVRKADTTVELPSG 365
           + + FTPTVL   R+ L++ +EVS+      P   +N     +PS  VR+ADTTV+L  G
Sbjct: 322 IGVKFTPTVLGSSRVNLKLVSEVSDLSQTGSPFTAINGVTSVIPSLSVRRADTTVQLNDG 381

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            ++V+AGL+K++I +  +  P L +IP+LGAL R++ F  ++TE+    TP LV+  A+ 
Sbjct: 382 QSLVIAGLIKNNITEAVKRFPGLGEIPVLGALARSTEFQTDQTELMFIITPRLVQ--ALA 439

Query: 426 DLSR-PDDHYSVEDDAKAFF 444
           +  R P D++     A+ + 
Sbjct: 440 EAPRVPTDNHVPPSRAEVYL 459


>gi|227820510|ref|YP_002824481.1| type II and III secretion system protein RhcC2 [Sinorhizobium
           fredii NGR234]
 gi|227339509|gb|ACP23728.1| type II and III secretion system protein RhcC2 [Sinorhizobium
           fredii NGR234]
          Length = 447

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 190/392 (48%), Gaps = 18/392 (4%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
            G+ + + + +  IL+    V+ V ++D   ADV V SP  +Y++    G  N+I +  D
Sbjct: 43  NGQVLELTVGEGTILRFDEPVESVFLADTAIADVRVVSPGVVYIYATKTGDTNLIALSAD 102

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                 + + +  +    E +       + + + +     V  G  R + +   A+++  
Sbjct: 103 QMTRGTVQVRVSGNPRAAEQSALALQPTTRVDISLFGGQYVGTGQTRNVGE---AMDMES 159

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
              S S       +  +  +N   IAG +QV ++V  AEV R+ L + G   S+  +S  
Sbjct: 160 VLQSYS-------TPDRPALNNTTIAGSNQVNIRVRFAEVARNELTRFGIDWSLFVNSG- 211

Query: 226 PSKSFA-ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
            S SF     GG    +    ++    D  +   +L AL+    +  LAEP +TA++GQ+
Sbjct: 212 -SFSFGIVRTGGASNEDDTGIAIGARGDHVNVNVLLDALQANGILTILAEPNITAVTGQT 270

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           ASF +GG+ +   V +  G   +    +GV L FTPT+L   RI L+++ EVS       
Sbjct: 271 ASFLAGGE-IPVPVPAGDGQIGIEYKQFGVSLQFTPTLLPNNRIALQVRPEVSSVSQDSV 329

Query: 345 AGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                  +PS R+R+ADT VE+ SG T  +AGL +    Q     P++  +PILG LF++
Sbjct: 330 VSISGLVVPSLRIRRADTAVEVGSGQTFAIAGLFQRQESQTLNKTPVVGDVPILGELFKS 389

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
            RF R ETE+ I  TP+LV P + R++  P D
Sbjct: 390 KRFQRNETELVILITPYLVTPTSERNMKTPLD 421


>gi|149911409|ref|ZP_01900027.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36]
 gi|149805517|gb|EDM65522.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36]
          Length = 489

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 199/416 (47%), Gaps = 42/416 (10%)

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           LQ+   +  V V +   AD+++   R +Y+ GK +G  N+++   D   +   ++ +  D
Sbjct: 55  LQMDKAIHRVSVGNSDIADILILRSRELYIVGKRLGTTNMMVWDKDDNLVHVQNLEVTHD 114

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           +  L   L +++ + +I VE     +V+ G V ++     AVE++E + + +        
Sbjct: 115 LNSLRKRLYKYLPNEDIGVETSQGQLVVSGQVSSLVKMNTAVEIAEGYATAAN----VGK 170

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI------------GFQHSITGSSSGPS 227
           S+  V+N++++ G  QV L+VT+AEV  DI + +            GF    TG+ + P+
Sbjct: 171 SNSIVVNMMSVGGGQQVMLEVTVAEVSTDIGRNLDGNTVLGAFGSDGFAGIGTGTGNVPT 230

Query: 228 K---SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
               S   +   ++++  GD           F       +     + LAEP LTA+SGQS
Sbjct: 231 NILGSIDTNIFARYLT--GDML---------FSVAFDVAKSKGLTKILAEPNLTALSGQS 279

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340
           A F SGG+  Y    S+    ++   D+GV + F PTVL  G+I L ++  VSE      
Sbjct: 280 AEFLSGGE--YPVPVSTDDGITIEYRDFGVGVSFVPTVLDSGKINLNLKVLVSELSSVNS 337

Query: 341 IGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           + ++A D       PS   R   TTVEL  G TIV+ GLL D +++     P L  IPIL
Sbjct: 338 VTISASDTNTSTITPSLIKRSTATTVELGDGQTIVIGGLLSDSLRESITKFPGLGDIPIL 397

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           G LF +  +   +TE+ I  TP LV+P     +  P D +    D + +   ++ +
Sbjct: 398 GQLFTSQEYISGQTELVIMVTPRLVRPFNKDGMILPTDGFVPVSDMEFYLLGKMTQ 453


>gi|254506750|ref|ZP_05118890.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus
           16]
 gi|219550331|gb|EED27316.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus
           16]
          Length = 487

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 213/431 (49%), Gaps = 34/431 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           GK + +  +K   + +    + V + DP   D+V+     ++L GK +G  N++     G
Sbjct: 25  GKIVKVPHHKSTHVTLAGKAKRVSLGDPEVLDIVMLKSDEVFLIGKKLGSTNLMAWDRRG 84

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + + +++I +  D+  L+  L  F+ +  I+V    + ++L G + +      A+ ++ET
Sbjct: 85  QLIESINIEVTHDLNSLKAKLYEFLPNEEIKVHSAQNRLILSGQISSQSAMNIALRVAET 144

Query: 167 FLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216
           + +    ++   S S++V     +NL+ I G  QV L+VT+AEV+R ++++       F+
Sbjct: 145 YSAGQEVDKENKSLSEQVQKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKFDSNFHFFE 204

Query: 217 HSITGSSSGPSK-SFAADFGGK----FVSEGGDFSVKGVLDRF-----SFETVLHALERA 266
            + + S  G S  +   D GG     F + G D +  G+L  F      F   L   ++ 
Sbjct: 205 SNGSFSWGGTSAGAIIDDVGGGIGPIFNTPGIDST--GLLGTFIDGDTLFTFALDIAKQN 262

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + LAEP LTA+SG  A F +GG+     V    G T +   +YGV L F PTVLS  
Sbjct: 263 GTAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDENGIT-IEYKEYGVGLKFIPTVLSDK 320

Query: 327 RIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            I L +  +VSE      + ++ G       +P    R A +T+EL  G TI +AGLL +
Sbjct: 321 NINLNLAVDVSEIANTSSLTLSPGGTNSTYVIPPITRRSASSTLELADGQTIGIAGLLSE 380

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           +++ +  G+P  S IP+LG +F +  +   ETE+ I  TP L KP+    +S P D +  
Sbjct: 381 NVRDVVSGMPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRNRVSLPTDSFVE 440

Query: 437 EDDAKAFFFNR 447
            +D + +   R
Sbjct: 441 PNDFEYYLLGR 451


>gi|218660088|ref|ZP_03516018.1| pilus assembly secretion protein [Rhizobium etli IE4771]
          Length = 157

 Score =  156 bits (395), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 82/152 (53%), Positives = 109/152 (71%), Gaps = 4/152 (2%)

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
           K  + ++   T L+ALE+A  +RTLAEPTLTAISGQ+A+F SGGQ LY T + + G  +V
Sbjct: 10  KSSIGKYDISTYLNALEQAKVVRTLAEPTLTAISGQAATFNSGGQQLYST-TDNDGNVTV 68

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              +YG+ L F P VLS GRI L I+T VSEPV G  +G+  +Y+ R A+T+VELPSGG+
Sbjct: 69  VPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAG--SGNA-TYQRRSAETSVELPSGGS 125

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           I LAGL++D++ Q   G P +SKIP+LG LFR
Sbjct: 126 IALAGLIRDNVSQTMGGTPGVSKIPLLGTLFR 157


>gi|307726375|ref|YP_003909588.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
 gi|307586900|gb|ADN60297.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
          Length = 616

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 211/424 (49%), Gaps = 35/424 (8%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + + + + K  ++     V++  + +P  A   + SP+T+Y+ G  VG  N+I+ G  G 
Sbjct: 89  RTVVVPVGKSTLMPTAEPVRNRTLGNPLVAQATMVSPQTLYVVGMAVGTTNMIVQGKSGA 148

Query: 108 QMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
             + +++++  D   L+ +L + + D  NIRV  V+  +VL G V + Q + +A E+++ 
Sbjct: 149 CEV-INVVVNADSGGLQTSLSQLMPDEPNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKA 207

Query: 167 FLSQS--------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +   +          N  A   +  V+N++++    QV L+V +AEV + +L Q+G   +
Sbjct: 208 YARSTLPGASGGANGNGTAAGKTATVLNMMSVDSPQQVMLEVKVAEVSKTVLNQLGAAMN 267

Query: 219 ITGSSSGPSKSFAADFGGKFVSE--GGDFSVKGV--LDRFSFETVLHALERATAIRTLAE 274
           I G        F + + G  +S    G  S+  V   +   F   +        ++ LAE
Sbjct: 268 IQGG-------FGS-WSGALISSLLAGVSSIVDVNKANNRPFNVAIDGQHGDNLVKILAE 319

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLR 331
           P L  +SGQ A+F +GG+       S+    S   +   ++GV L FTPTVL+ GRI L+
Sbjct: 320 PNLVTLSGQEATFLAGGKVFIPIPQSNLNGVSTIILQEEEFGVGLKFTPTVLAGGRINLK 379

Query: 332 IQTEVSE-PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +  EVSE    GV  G         +P    R+A TTV++  G T  + GL+K++     
Sbjct: 380 VAPEVSELSSTGVTVGATNTNNLTVLPLITTRRASTTVQMNDGETFAIGGLIKNNAAGTL 439

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAK 441
           + IP + ++P+LGALFR++ + ++ TE+    TP LVKP+    +L  P D     ++A 
Sbjct: 440 KAIPGVGEVPVLGALFRSTSYQQDRTELVFIITPHLVKPLQTAANLPLPTDRLKTPNEAD 499

Query: 442 AFFF 445
            +  
Sbjct: 500 VYLM 503


>gi|317491683|ref|ZP_07950118.1| type II and III secretion system protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920117|gb|EFV41441.1| type II and III secretion system protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 467

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 203/398 (51%), Gaps = 42/398 (10%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++QV  ++  + +S P  AD  +   R + ++ K+ G+ ++I    +G Q++   ++++ 
Sbjct: 51  VIQVNGNIDTIFISAPKVADYEIIGERGVMVYAKSEGKTDLIAFDKNGDQLVKTTLVVDP 110

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS---GRNQ 175
            ++ L+  +   + DS I ++ +  T +L G V T +D  R  ++    +  +    + +
Sbjct: 111 ILSSLQKKVSSLVPDSQITLQKMGKTYILSGSVATEEDRDRVYQIVGEGVGATRTTNKKE 170

Query: 176 YANSSS------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
            AN++                   ++V+N L +   +QV +K+++ EV +     +G   
Sbjct: 171 VANTNGGSGGNGENSNSWLDEVVYQEVINQLKLPMTNQVNVKLSVVEVTKTFSDNVGIDW 230

Query: 218 -SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
            +I+GS             G  ++ G    VK   D  S  +++HA+   +  R LAEP 
Sbjct: 231 GTISGS-------------GGNITPGTFRFVKFNADTLS--SLVHAISNDSVARVLAEPN 275

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L+ +SG+SA F  GG+     V+SS   ++V   D+G+ L+    V S  RI + +  EV
Sbjct: 276 LSVLSGESAEFLVGGE--VPVVTSSANGSNVQYKDFGIKLNVGAKVSSNKRIRVTLGEEV 333

Query: 337 S--EPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           S  +     NAGD  P+++ R+A TTVEL  G + +L GL+ ++ ++    +P +  +PI
Sbjct: 334 SNVDSTYSTNAGDSFPAFQTRRAKTTVELADGESFLLGGLISNNEREELSRLPFIGDVPI 393

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           LGALFRN++  R   E+ + AT  LVKPV MRD+  PD
Sbjct: 394 LGALFRNAKTERSRGELVVVATVNLVKPVTMRDIVMPD 431


>gi|145219384|ref|YP_001130093.1| type II and III secretion system protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205548|gb|ABP36591.1| type II and III secretion system protein [Chlorobium
           phaeovibrioides DSM 265]
          Length = 472

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 209/447 (46%), Gaps = 54/447 (12%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + +G ++V  L+ P+  + V V +P  AD ++ +   +YL GK  G  N+IL    GK  
Sbjct: 39  VPVGESRVYRLEQPI--KRVAVGNPEVADYIMLNSSELYLLGKKTGATNLILWNQQGKFT 96

Query: 110 LNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
             L + + R+   ++  LR  + + S I++    + +VL G V     ++ A  L + +L
Sbjct: 97  STL-LQVSRNSYPIKQLLRTALPEESEIQIFSSGEALVLAGSVSNRLAAETAYRLVKAYL 155

Query: 169 SQSGRNQYANSSSKK----------------------------------VMNLLNIAGED 194
                +    SS  K                                  V+NLL +    
Sbjct: 156 GGKVPDVNPESSLAKTTSASAASASIAGTTNGSSAVPVQASTQSTAPAGVVNLLTVRDTQ 215

Query: 195 QVTLKVTIAEVRRDILKQ--IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           QV L+V IAEV +  L+   IG+Q   TG++ G            FVS      +     
Sbjct: 216 QVRLEVRIAEVSKTYLQTLGIGWQQG-TGNTQG-------SLMTGFVSNATLNVLLQTKS 267

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
               E  + A  +   I+ LAEPTL A+SG+   F  GG+    TV+S+ GA       Y
Sbjct: 268 NPGNELSMDAERKEGVIKILAEPTLVAMSGEEGYFLVGGKVFTPTVTSN-GAIDYVERTY 326

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGD---MPSYRVRKADTTVELPSGGTI 368
           GV L FTPTVL  GRI L++  EVSEP+   V AG    +P ++   A +TV++  G  +
Sbjct: 327 GVGLRFTPTVLDSGRISLKVAPEVSEPLKEAVTAGTSTPLPGFKTSFASSTVQMNEGENL 386

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           V+ GLL+D++ ++   +PLLS IPILG+LFR++  + E TE+ +   P L+K  +     
Sbjct: 387 VIGGLLRDNLTEVVRAVPLLSDIPILGSLFRHTEKSSETTELMVIIRPTLIK-ASTTAQE 445

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPK 455
            P D ++    ++ F   ++    G K
Sbjct: 446 LPTDKFAPPSSSELFLEGKLQGSRGSK 472


>gi|258405291|ref|YP_003198033.1| type II and III secretion system protein [Desulfohalobium retbaense
           DSM 5692]
 gi|257797518|gb|ACV68455.1| type II and III secretion system protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 455

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 205/422 (48%), Gaps = 42/422 (9%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT-KADVVVHSPRTMYLFGKNVGQ 96
           N +D  I +  +++ G  K ++L+   ++  V   DP    D ++  P  +YL     G 
Sbjct: 42  NSADDSIMRSLELTYG--KSVVLKSNREITRVSEPDPNVLKDPLLIGPNELYLTPAGAGT 99

Query: 97  ANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTI 154
           AN+IL    GK++  + +I ++ D++ L+  L     + N +RV   ++++ L G V + 
Sbjct: 100 ANLIL--WQGKEVSTVYEITVKHDLSRLKQRLHELFPEENELRVLSTNESITLSGQVSSA 157

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
               + + L+ET+  + G           + N + + G  QV L+V +AEV R  L ++G
Sbjct: 158 SALDQIMALAETYAPEGG-----------IKNQVTVKGIHQVMLEVKVAEVSRQSLDRLG 206

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALER 265
               +           AA+F   F+             +F   G  D   F  +   L+R
Sbjct: 207 INFDLIND--------AAEFSIGFLGAASAGSSGSGSFNFWRNG--DNVDFNGLFDFLKR 256

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + LAEP+L ++SGQ++SF +GG+     V S  G   V    YG+ L FTPTV+S 
Sbjct: 257 EGLAKILAEPSLISMSGQTSSFLAGGEIPIPDVDSD-GNIGVEFKSYGIELAFTPTVMSK 315

Query: 326 GRIGLRIQTEVSE--PVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI +++   VSE     G  +N   +P  +VR+A+TTVEL  G +  +AGLL ++ ++ 
Sbjct: 316 ERIAIKVVPVVSELDEASGTVINGAQVPGLKVRRANTTVELGDGQSFAIAGLLSENSEET 375

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
               P L  +P+LG LF +  F  +ETE+ I  TP LV P+     S P D +    DA+
Sbjct: 376 VSKFPGLGDLPVLGPLFTSKSFTSDETELVIMVTPKLVTPLVAEKQSLPTDFFIHPTDAE 435

Query: 442 AF 443
            +
Sbjct: 436 FY 437


>gi|260776715|ref|ZP_05885610.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607938|gb|EEX34203.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
          Length = 476

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 207/434 (47%), Gaps = 53/434 (12%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           +GK K++S+G                   DP   D+V+     ++L GK +G  N++   
Sbjct: 30  VGKAKRVSLG-------------------DPEVLDIVMLKSNEVFLIGKKLGSTNLMAWD 70

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
             G+ + +++I +  D+  L+  L  F+ D  I V    + ++L G+V +      A+ +
Sbjct: 71  SRGRLIESINIEVTHDLNSLKAKLFEFLPDEEIGVHSAQNRLILSGLVSSQSAMNIALRV 130

Query: 164 SETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIG---- 214
           +ET+ +    ++   S S++V     +NLL I G  QV L+VT+AEV+R ++++      
Sbjct: 131 AETYAAGQEVDKETESLSEQVSKTGVINLLTIGGAQQVMLEVTVAEVQRTLVRKFDSNFH 190

Query: 215 -FQHS----ITGSSSGPS-----KSFAADFGGKFVSEGGDFSVKGVLDRFSFET-VLHAL 263
            FQ S      G+S+G S        A  F    +   G      ++D  +F T  L   
Sbjct: 191 FFQSSGDFNWGGTSAGGSIDDVNNVVAPIFNAPTIENTGLLGT--LIDSNTFFTFALDIA 248

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           ++    + LAEP LTA+SG  A F +GG+     V    G T +   +YGV L F PT+L
Sbjct: 249 KQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDEDGIT-IEYKEYGVGLKFIPTIL 306

Query: 324 SPGRIGLRIQTEVSEPVI---------GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGL 373
           +  +I L +  +VSE            G NA   +P    R A +T+EL  G TI +AGL
Sbjct: 307 TDQKINLNLAVDVSEIANSATLTLAPGGTNATYVIPPITRRSASSTLELADGQTIGIAGL 366

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L ++++     +P  S IPILG +F +  +   ETE+ I  TP L KP+    ++ P D 
Sbjct: 367 LSENVRDSVAEMPGFSDIPILGQMFNSQEYISGETELVILVTPRLAKPIDRNRVTLPTDS 426

Query: 434 YSVEDDAKAFFFNR 447
           +   +D + +   R
Sbjct: 427 FVEPNDFEYYLLGR 440


>gi|238782881|ref|ZP_04626910.1| Type II/III secretion system protein [Yersinia bercovieri ATCC
           43970]
 gi|238716304|gb|EEQ08287.1| Type II/III secretion system protein [Yersinia bercovieri ATCC
           43970]
          Length = 426

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 197/395 (49%), Gaps = 29/395 (7%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              K + I   +  I++   ++  V VS    AD  + +  ++ ++ K+ G   +IL   
Sbjct: 17  ANAKSVYISPGESYIIKTEAEIDTVFVSSAAVADYELVNKNSIIVYAKSEGTTEIILFDD 76

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR-AVEL 163
             + +    IL+   I      +     DSNI ++ + D+ +L G+V + ++    A  +
Sbjct: 77  KHQVLAKKTILVNNIINAANKRVLIEYPDSNIDIDKIGDSYILTGIVESEEEKDTLATIV 136

Query: 164 SETFLSQ----SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            E   SQ    S R   +      ++N L +   +QV +K+TIAEV +D  + +G   S 
Sbjct: 137 GEAIGSQKEKTSERQYLSTPDYAHIVNKLKLPQANQVNVKLTIAEVTKDFTENVGVDWST 196

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G + G   SF      +FV     F+  G+       T++HA+   +  R LAEP L+ 
Sbjct: 197 MGDAIG---SF------QFVK----FNANGI------STLVHAINDESIARVLAEPNLSV 237

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
           +SG+SASF  GG+      S++  + +VT  ++G+ L+    V    RI + +  EVS  
Sbjct: 238 LSGESASFLVGGE--IPIASNTENSQTVTYKEFGIKLNIGAKVNEKKRIRILLNEEVSSI 295

Query: 339 -PVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                +  GD  PS + RKA TT+EL  G + +L GL+ +  ++  + IP +  IPILGA
Sbjct: 296 GKSFSMEGGDSYPSLKTRKAATTLELGDGESFILGGLISNSERESLKKIPFIGDIPILGA 355

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           LFRN++  + +TE+ + AT  LVKPV+ +++  PD
Sbjct: 356 LFRNAQTEQSQTELVVIATVNLVKPVSRKEIELPD 390


>gi|238793622|ref|ZP_04637245.1| Type II/III secretion system protein [Yersinia intermedia ATCC
           29909]
 gi|238727037|gb|EEQ18568.1| Type II/III secretion system protein [Yersinia intermedia ATCC
           29909]
          Length = 425

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 195/383 (50%), Gaps = 32/383 (8%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           I++   ++  V VS    AD  +    ++ ++ K  G A  IL   D   M+   I++  
Sbjct: 29  IIKTEEEIDTVFVSTAAIADYELVGKNSIIVYAKKEGTAEFILFNKDNHPMIKTTIMVND 88

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT--IQDSQRAVELSETFLSQSGRNQ- 175
            I      ++    DSN+ +  + ++ +L G   +   +D+  A+ + E    +  +N+ 
Sbjct: 89  IITSAYQRIKIEYPDSNVEINKIGNSYLLTGKAESEEAKDTIAAI-IGEAINKKREQNRE 147

Query: 176 ---YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFA 231
              + N +   V+N + +   +QV +K+TIAEV +D  + IG   S I+ +S G   SF 
Sbjct: 148 DQHFNNPNYLGVINKIKLPESNQVNVKLTIAEVTKDFSENIGVDWSSISEASVG---SF- 203

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                KF+     F+  G+       T++HA+   +  R LAEP L+ +SG+SASF  GG
Sbjct: 204 -----KFLK----FNATGI------STLVHAINDDSIARVLAEPNLSVLSGESASFLVGG 248

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD-M 348
           +      +++  +T +    YG+ L+    V    RI + ++ EVS  + V  V  G+  
Sbjct: 249 E--IPMFNTNQNSTIIKYKTYGIKLNIAAKVNEKNRIRISMEEEVSSVDKVFNVEGGNAY 306

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS R RKA TT+EL  G + +L GL+    ++  + IP +  IPILGA FRN++  +++T
Sbjct: 307 PSLRTRKAATTLELGDGESFILGGLISKSERESLKKIPFIGDIPILGAFFRNAQTQKQQT 366

Query: 409 EIFIAATPFLVKPVAMRDLSRPD 431
           E+ + AT  LV PVA +D+  PD
Sbjct: 367 ELVVVATVSLVNPVAGKDVELPD 389


>gi|77919345|ref|YP_357160.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380]
 gi|77545428|gb|ABA88990.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380]
          Length = 507

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 211/450 (46%), Gaps = 39/450 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILIGH 104
           ++IG ++++ ++ P     +L+S+    D++   P       +Y  GK +G + V +   
Sbjct: 38  VNIGGSELVEIREPSQRMKILISN---GDIIGARPLRPNLINVYNLGKKIGFSRVTVWDD 94

Query: 105 DGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
             +Q+  + D+ +  D+  L+  +       NI+V      VVL G V + +  ++ + L
Sbjct: 95  AARQVRAIIDVSVNLDLTPLKQKIGELYPHENIKVYASETGVVLSGTVSSPEVVEQVIRL 154

Query: 164 SETFLSQSGR----NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR----DILKQIGF 215
           +ETFL +        +    S   + NLL++ G  QV L+V  AEV R    D    +GF
Sbjct: 155 TETFLPKKAEASTSGKGTGKSGSGITNLLSVGGVQQVMLEVKFAEVTRSSGRDWQAALGF 214

Query: 216 QHS------ITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGV---LDRFSFETVLHAL 263
                    + G           DF GK  S      DF+       +    F + L  L
Sbjct: 215 NGLGDNSGLVAGVGGISGDISGGDFTGKLGSVLLNFADFASNPANIFVQMGDFTSALRFL 274

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E     R LAEP L  +SGQ ASF +GG+  +          ++   ++GV L FTP V+
Sbjct: 275 EDEGLARILAEPRLVTMSGQEASFLAGGE--FPIPVPDEDGITIEFREFGVSLRFTPVVM 332

Query: 324 SPGRIGLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           S G+I LR+   VS+     +          ++P+   RK +TTV+L  G T+ LAGLL+
Sbjct: 333 SDGKISLRVAPSVSDIASTSSIPSSITGTTYNVPNLTTRKLETTVQLYDGQTLALAGLLQ 392

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           D +++    IP L  +PILGALFR++ + +E+T++ IA TP LVKP     LS P ++  
Sbjct: 393 DTLRESVSKIPGLGDLPILGALFRSTSYTQEKTDLLIAVTPHLVKPSKEGTLSFPGEYMR 452

Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
             +  + +   R+     P + S +   ++
Sbjct: 453 PPNRLEFYLEGRLEGRRFPNDPSALSQHSF 482


>gi|261251598|ref|ZP_05944172.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
 gi|260938471|gb|EEX94459.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
          Length = 457

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 199/404 (49%), Gaps = 36/404 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + +N+  ++ +P D + + +S+   AD    +   + +FG   G A + ++    + +
Sbjct: 27  LEVNINEAKMINLPQDAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITILNAQERVI 86

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N  I +  D   L+  +     ++++  E +   + L G V T   +   V +++ +LS
Sbjct: 87  YNNKIRVVHDTKELDSLIAAQFPEASVHSESLGGKLWLKGNVPTPVMAHSIVSVAKGYLS 146

Query: 170 -----QSGRNQYANS----------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
                Q   N   +S          +S +++N L +    QV ++V IAEV R++  ++G
Sbjct: 147 PVIAPQQSENGSTSSDSSTQNSGSDNSDELVNQLMVTMPTQVNIRVRIAEVSRNVSNKLG 206

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            +            S  A  G    ++  D S  G   + +   ++ AL     +  LAE
Sbjct: 207 IKWG----------SLQAGMGSFLYTKAWDVSSWG---KPTLGALVDALASDGTMSILAE 253

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P LTA+SG+ ASF  GG+     ++  T   +V    +GV L+FTP VL P RI LR+  
Sbjct: 254 PNLTAMSGEDASFLVGGEIPLPLINGDTA--TVEYKPFGVNLNFTPVVLGPDRISLRVSP 311

Query: 335 EVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLS 389
           EVS    +    +N    PS+  R+A TT+EL SG +  L GLL+  +I QL++ +P   
Sbjct: 312 EVSSVSVDNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQK-LPGAG 370

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
            IPILG LFR+S + R+ETE+ I AT +LV+PV    L  P D+
Sbjct: 371 DIPILGGLFRSSEYQRKETELIIIATAYLVEPVRNDALPLPTDN 414


>gi|13475417|ref|NP_106981.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
 gi|14026169|dbj|BAB52767.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
          Length = 481

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 216/462 (46%), Gaps = 36/462 (7%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           F+  M+    S   ++     + +A    I++S+  +    ++ + +++ + + V   + 
Sbjct: 4   FWVRMAAVALSCFATLPTWSLVADAADRFIDVSNPSV---HRVFLPMSQSVTIAVNATLG 60

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           D++V D   AD    + RT+Y+ GK  G   V L   + + +  + I +  D++ +   +
Sbjct: 61  DIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSPEKRSLGVIQIEVGVDVSDMAQAI 120

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
           R+    S I V  V+  V L G V+        +E+++         QY       ++N 
Sbjct: 121 RQVAPRSRIEVASVNGRVRLGGHVKDGVTMAAILEVAK---------QYG---PDDIINS 168

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQ--------HSITGSSSGPSKSFAADFG-GKF 238
           + I    QV L+V I E +R+  + +G           +I G+            G G F
Sbjct: 169 VTIDDSQQVNLEVRILEAKRNAGRDLGVSIRSNNSRSTTIVGTGIAAVDKDNVVLGTGGF 228

Query: 239 VSE-------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           +S+        G    + + +    +  + ALE   A+RTLA P LT +SG+ ASF +GG
Sbjct: 229 LSDLLSTSTPFGALLTRVIDNNIKVDLYIEALEAKGAVRTLANPNLTTLSGEQASFNAGG 288

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           +   +T+  + G  S+    +GV L FTP VL  G+I + +  EVS+      AGD P +
Sbjct: 289 EVPIRTLDKN-GEISIVYKQFGVNLLFTPVVLDDGKIHMNLAPEVSDLNGFTTAGD-PIF 346

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             RK  T VEL  G +  + GLL     +L+  +P L ++P++G LFRNS   +EETE+ 
Sbjct: 347 TNRKLSTVVELRDGQSFAVGGLLSSRTTKLQNQVPWLGQVPVIGTLFRNSSNQKEETELV 406

Query: 412 IAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNR--VNK 450
           +  TP +V+PV     L+ P D     +D + F   +  VNK
Sbjct: 407 VIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQLEVNK 448


>gi|323493503|ref|ZP_08098625.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
 gi|323312326|gb|EGA65468.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
          Length = 458

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 194/404 (48%), Gaps = 37/404 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + +N+  ++ +P D + + +S+   AD    +   + +FG   G A + ++    + +
Sbjct: 27  LEVTINQAKMINLPQDAKSIFISNTHVADYQPMTNTKIMVFGLQAGSATITILNAQERVI 86

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N  I +  D   L   +     +++++ E +   + L G V T   +   V +++ +LS
Sbjct: 87  YNNKIRVTHDTFELNSLISSQFPEASVKSESLGGKLWLKGSVPTPVMAHSIVNIAKGYLS 146

Query: 170 QSGRNQYA----------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
                Q +                  S  +++N L +    QV ++V IAEV R++  ++
Sbjct: 147 PPTAGQSSDSSSDSESSNNTSEQQGDSGNELVNQLVVTMPTQVNIRVRIAEVSRNVSNKL 206

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G +            S  +  G    ++  D S  G   + +   ++ AL     +  LA
Sbjct: 207 GIKWG----------SLESGMGSFLYTKAWDVSSWG---KPTLGALIDALASDGTMSILA 253

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           EP LTA+SG+ A+F  GG+     +   T   +V    +GV L+FTP VL P RI LR+ 
Sbjct: 254 EPNLTAMSGEEANFLVGGEIPLPLIIGDTA--TVEYKPFGVNLNFTPVVLGPDRISLRVS 311

Query: 334 TEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLL 388
            EVS   +     +N    PS+  R+A TT+EL SG +  L GLL+  +I QL++ +P +
Sbjct: 312 PEVSSISVDNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQK-LPGI 370

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
             +P+LG LFR+S + R ETE+ I AT +LV+PV    +  P D
Sbjct: 371 GDMPVLGGLFRSSDYQRRETELIIIATAYLVEPVRNDAIPLPTD 414


>gi|54309660|ref|YP_130680.1| Flp pilus assembly protein [Photobacterium profundum SS9]
 gi|46914098|emb|CAG20878.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           SS9]
          Length = 461

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 195/404 (48%), Gaps = 47/404 (11%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           I LN    L+ P ++  V VS P   D  V   R + +F   +GQA VI+ G + + +L+
Sbjct: 34  ITLNDANNLEFPQEIGTVFVSQPDILDYKVIDNRKLVIFSNKIGQAKVIVYGKENQVLLS 93

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
               ++ +++ +   L+ +  D NI V  V + V + G V   +       +  T L + 
Sbjct: 94  QRYHVDINLSQVRRQLKLYYPDLNISVSSVGEQVAVRGTVNNEKQRDDIYRMVATLLGKK 153

Query: 172 GRNQYANSSSKK----------------------VMNLLNIAGEDQVTLKVTIAEVRRDI 209
              +Y  +   K                      ++  L IA   QV +K+++A+V ++ 
Sbjct: 154 EIERYNEAEKLKFVESGFEEANWVRYSKNYIWEGIVEGLVIAQAQQVNVKISVAQVTKEF 213

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            + IG   S  G S G   SF      KF  +  D S           TV++A+      
Sbjct: 214 NETIGVDWSTVGRSVGEF-SFL-----KF--KANDLS-----------TVINAIGNDNIA 254

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             LAEP LT +SG+SASF  GG+     + ++  +T+++  ++G+ L  +  VLS   I 
Sbjct: 255 EILAEPNLTVLSGESASFLVGGE--VPVIVTNDNSTNISFKEFGIKLELSAKVLSNKSIK 312

Query: 330 LRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIP 386
           L++  EVS  E  +     ++P    R+A TT++L  G + +L GL+  DDI+++ + IP
Sbjct: 313 LQLAPEVSAVEGYVKAAGIEVPQLSSRRAMTTIQLADGDSFMLGGLMSSDDIEEISK-IP 371

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           LL  IPILGA FR S   R++TE+ I AT  LVKPV+  D+  P
Sbjct: 372 LLGDIPILGAAFRKSSTTRKKTELVIVATVNLVKPVSPTDVRLP 415


>gi|87312292|ref|ZP_01094390.1| putative outer membrane channel for pilus assembly CpaC
           [Blastopirellula marina DSM 3645]
 gi|87284996|gb|EAQ76932.1| putative outer membrane channel for pilus assembly CpaC
           [Blastopirellula marina DSM 3645]
          Length = 534

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 188/398 (47%), Gaps = 31/398 (7%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV N++       +++ + +N   I  +   +    V++P    +   SP  + +     
Sbjct: 25  AVPNVNFKVDAPNQRLEMMVNSSRIFTLDEKIPKAQVNNPDLLRLTPLSPNKIQVSALKP 84

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           G   V L   DG  +  +DI++  D   L++ L     +S+I+V  ++ +VVL G V   
Sbjct: 85  GVTQVNLWNEDGT-IHTIDIIVIGDGRELQLLLETEFPNSSIKVRPLASSVVLSGYVDRP 143

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           +   R V ++E +               KV+N + + G  QV LKV + EV R  L+++G
Sbjct: 144 EAVSRIVAMAEDYY-------------PKVINNITVGGVQQVMLKVKVYEVSRTKLRRLG 190

Query: 215 FQHSITGS-------------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
              +  GS              +G   S A D  G    +   F V G      F   L 
Sbjct: 191 IDWAAIGSDYFISSTAANVLTPAGVLTSGARDALGA-TGQTVQFGVLG--SSTQFFGFLD 247

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL +    +  AEPTLT ISG+ ASF SGG+   + V+S  G TS+    YG  + F P 
Sbjct: 248 ALRQNNVAKLSAEPTLTTISGRPASFLSGGEVPIQ-VASGLGTTSIEYKQYGTRVDFVPI 306

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           VL  G + L ++ EVSEP   V     P +R+R  DT VE+ +G +  LAGL+++ I+  
Sbjct: 307 VLGNGNLKLEVRPEVSEPDYSVAINGTPGFRLRWVDTAVEMKAGQSFALAGLIQEKIETE 366

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             G+P L+ +P +GA FR +  +R E E+ I  TP LV
Sbjct: 367 TRGLPYLADLPWVGAAFRRNTDSRNEVELLIIVTPELV 404


>gi|149188863|ref|ZP_01867153.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
 gi|148837283|gb|EDL54230.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
          Length = 456

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 200/407 (49%), Gaps = 49/407 (12%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    +Q+ + +  V +S+P  AD  + +  T+ +F   VGQ+ +I+ G +   +L
Sbjct: 34  SITLNDGQHIQLKMPIGKVFISNPAIADYKIINDNTLVVFANGVGQSRLIVYGTNNDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ D++ +   L+    D+ ++V+ V + V + G+V + Q       L  T L +
Sbjct: 94  SDRIIVDLDLSEVRRQLKFHFPDAKVKVQSVGEQVAVSGVVDSEQTRDDIYRLVATLLGR 153

Query: 171 SGRNQY------------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++                         N + + ++  + +A   QV +K+++A+V 
Sbjct: 154 EKIKKWDKTEKLEFKSEHMERKEPESMVFARNMTWEGILERIEVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               K +G   S  GSS G           +FV +          D  +  T++ AL   
Sbjct: 214 ESFGKTVGVDWSSVGSSVG-----------EFVFDQ--------FDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
           +    LAEP LT +SG+SASF  GG+     + S++   ++T  ++G+ L  T  VLS  
Sbjct: 255 SIAEVLAEPNLTVLSGESASFLVGGE--VPVIVSTSNNVNITFKEFGIKLDLTAKVLSQD 312

Query: 327 RIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKE 383
           +I +++  EVSE    V A    +P    R+A TTVEL  G + +L GL+   D++++++
Sbjct: 313 KIRMQLSPEVSEVESYVEAAGVKVPQLASRRAMTTVELADGDSFILGGLMSSSDLEKMQK 372

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            IP +  +P+LGA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 373 -IPFIGDVPVLGAAFRKATTQRKRTELIIVATVNLVEPMKPKDIQLP 418


>gi|218708107|ref|YP_002415728.1| putative bacterial type II secretion system protein D; rcpA, CpaC
           [Vibrio splendidus LGP32]
 gi|218321126|emb|CAV17076.1| putative bacterial type II secretion system protein D; rcpA, CpaC
           [Vibrio splendidus LGP32]
          Length = 435

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 185/384 (48%), Gaps = 38/384 (9%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           ++  V +S    AD  V     + +FGKN+G A+ I     G+++ N  +L+ +    +E
Sbjct: 35  EIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAKGRELFNRLLLVNKSYREIE 94

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN---QYANSSS 181
             +     D+ + V  + + VVL G+V   Q+     +L    L ++  +   Q ++  S
Sbjct: 95  QQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVGELLGKTANSTSFQMSDEES 154

Query: 182 KKV----MNLLNIAG---------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
             +    M  LN AG           QV +K+TIAEV    ++  G +    GS+  P  
Sbjct: 155 DDIDVGFMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSFMQDFGIK---MGSNGTP-- 209

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                  G FV +   FS   ++      +V+ AL   +  + LAEP L+ ISG+ ASF 
Sbjct: 210 -------GIFVDQLTHFSASDIV------SVISALGTDSVGQVLAEPNLSVISGEKASFL 256

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG 346
            GG+     V+   GAT+V   ++GV L     VL   +I L +  EVS  +     +  
Sbjct: 257 VGGE--LPVVTVIDGATNVEYKEFGVRLELLAKVLRDDKIKLALTPEVSSLDGSYSSDNF 314

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+P+ R R+A TTVEL  G + VL GLL  + ++    IP +  IPI+GALFR++   R 
Sbjct: 315 DLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPYIGDIPIIGALFRHTGTERS 374

Query: 407 ETEIFIAATPFLVKPVAMRDLSRP 430
           +TE+ I AT  LV+PV    +  P
Sbjct: 375 KTELVIVATVNLVQPVKAEQIQLP 398


>gi|86147184|ref|ZP_01065500.1| general secretion pathway protein D [Vibrio sp. MED222]
 gi|85835068|gb|EAQ53210.1| general secretion pathway protein D [Vibrio sp. MED222]
          Length = 439

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 185/384 (48%), Gaps = 38/384 (9%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           ++  V +S    AD  V     + +FGKN+G A+ I     G+++ N  +L+ +    +E
Sbjct: 39  EIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAKGRELFNRLLLVNKSYREIE 98

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN---QYANSSS 181
             +     D+ + V  + + VVL G+V   Q+     +L    L ++  +   Q ++  S
Sbjct: 99  QQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVGELLGKTANSTSFQMSDEES 158

Query: 182 KKV----MNLLNIAG---------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
             +    M  LN AG           QV +K+TIAEV    ++  G +    GS+  P  
Sbjct: 159 DDIDVGFMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSFMQDFGIK---MGSNGTP-- 213

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                  G FV +   FS   ++      +V+ AL   +  + LAEP L+ ISG+ ASF 
Sbjct: 214 -------GIFVDQLTHFSASDIV------SVISALGTDSVGQVLAEPNLSVISGEKASFL 260

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG 346
            GG+     V+   GAT+V   ++GV L     VL   +I L +  EVS  +     +  
Sbjct: 261 VGGE--LPVVTVIDGATNVEYKEFGVRLELLAKVLRDDKIKLALTPEVSSLDGSYSSDNF 318

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+P+ R R+A TTVEL  G + VL GLL  + ++    IP +  IPI+GALFR++   R 
Sbjct: 319 DLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPYIGDIPIIGALFRHTGTERS 378

Query: 407 ETEIFIAATPFLVKPVAMRDLSRP 430
           +TE+ I AT  LV+PV    +  P
Sbjct: 379 KTELVIVATVNLVQPVKAEQIQLP 402


>gi|193213115|ref|YP_001999068.1| type II and III secretion system protein [Chlorobaculum parvum NCIB
           8327]
 gi|193086592|gb|ACF11868.1| type II and III secretion system protein [Chlorobaculum parvum NCIB
           8327]
          Length = 472

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 206/442 (46%), Gaps = 60/442 (13%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++S G ++V  +  P+  + V V +P  AD ++ +P  +YL GK  G  N+I+   +G  
Sbjct: 37  RVSEGESRVYRMGSPI--KRVAVGNPEIADYIILNPTELYLLGKKTGATNLIVWDQNGNS 94

Query: 109 MLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
             +  + + R++  ++  +R  +  +++I +      +VL G V     ++ A  L + +
Sbjct: 95  A-STPLQVSRNVEPIKDLIRTVLPNETDIHIYSSGPALVLAGTVSNSLAAETAYRLVKGY 153

Query: 168 L--------------SQSGRNQYANSSS-----------------------KKVMNLLNI 190
           L              +    + YA ++S                         V+NLL +
Sbjct: 154 LGGDVPADNPEKTLTNTKPADSYAGTASLSGIVKSASLVAGGPTGAEGSGMSGVVNLLKV 213

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
               QV L+V IAEV +  ++ +GF+ +  I   S G    F ++       E  +  +K
Sbjct: 214 RDAQQVRLEVHIAEVSKTFMQALGFEWAGRIGNVSGGLMTGFVSN-------ETINLLLK 266

Query: 249 GVLDRFSFETVLHALERAT--AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
              D  S    + A        I+ LAEPT+ A+SGQ   F  GG+ +Y    ++ GA  
Sbjct: 267 ---DNTSHSQRIKAENECDNGWIKILAEPTIVAMSGQEGYFLVGGK-IYVPTITANGAVD 322

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPS 364
                YGV L FTPTVL  GRI L++  EVSEP        G + +++   A TTV++  
Sbjct: 323 YQERTYGVGLRFTPTVLDAGRISLKVAPEVSEPPTSAADGTGTLLAFKTSYASTTVQMNE 382

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  +V+ GLLKD I +  + +PLL  IP+LGALFR+++   E TE+ +   P LV+  + 
Sbjct: 383 GQNLVIGGLLKDKITETLKAVPLLGDIPLLGALFRHTKIESENTELLVVVRPTLVE-ASD 441

Query: 425 RDLSRPDDHYSVEDDAKAFFFN 446
                P D + +    K  FF+
Sbjct: 442 TPPELPTDRF-IPPTQKELFFD 462


>gi|238796996|ref|ZP_04640500.1| Type II/III secretion system protein [Yersinia mollaretii ATCC
           43969]
 gi|238719256|gb|EEQ11068.1| Type II/III secretion system protein [Yersinia mollaretii ATCC
           43969]
          Length = 340

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/320 (33%), Positives = 176/320 (55%), Gaps = 32/320 (10%)

Query: 123 LEMTLRRFIA---DSNIRVEMVSDTVVLHGMVRTIQDSQR-AVELSETFLS---QSGRNQ 175
           +  T +R IA   DS+I ++ + D+ +L G V + ++    A  + E   S   +SG+ Q
Sbjct: 6   INATNKRIIAEYPDSHIEIDKIGDSYILTGEVESEEEKDTIATLVGEAIGSKKEESGKGQ 65

Query: 176 YANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
           Y N+     ++N + +   +QV +K+TIAEV +D  + +G   S  G + G   SF    
Sbjct: 66  YFNTPYYSNIINKIKLPQSNQVNVKLTIAEVTKDFSENVGVDWSTAGDAVG---SF---- 118

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             +F+     F+ KG+       T++HA+   +  R LAEP L+ +SG+SASF  GG+  
Sbjct: 119 --QFIR----FNAKGI------STLVHAINDDSIARILAEPNLSVLSGESASFLVGGE-- 164

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGD-MPSY 351
              +S++  + +V+  ++G+ L+    V    RI + I  EVS       +  GD +PS 
Sbjct: 165 IPIISTTENSRTVSYKEFGIKLNIGAKVNEKKRIRIHINEEVSSIGKTFNIEGGDSIPSL 224

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           R RKA+TT+EL  G + +L GL+    ++  + IPL+  IPILGALFRN++  + +TE+ 
Sbjct: 225 RTRKAETTLELGDGESFILGGLISHTERESLKKIPLIGDIPILGALFRNAQTEQNQTELV 284

Query: 412 IAATPFLVKPVAMRDLSRPD 431
           + AT  LVK V+ +++  PD
Sbjct: 285 VIATVNLVKSVSKKEVELPD 304


>gi|328470518|gb|EGF41429.1| rough colony protein RcpA [Vibrio parahaemolyticus 10329]
          Length = 447

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/409 (30%), Positives = 202/409 (49%), Gaps = 38/409 (9%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           +  G+ +S+       + V  ++  V V+D   AD  V +   + ++G   G  ++I   
Sbjct: 21  VSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGKLVIYGIGRGATSIIAYD 80

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE- 162
             G ++ N ++++ + +  L+ T+     D +I++  + + +V+ G+V + +   +    
Sbjct: 81  RAGNEIYNAEVVVNKSLRLLKQTIIARYPDEDIKLTNIGEQIVIDGVVSSEEIKDKVYRH 140

Query: 163 LSETFLSQSGRNQY----ANSSS------------KKVMNLLNIAGEDQVTLKVTIAEVR 206
           + E       RN +    AN  S            + ++N L +   DQ+ +K+T+AEV 
Sbjct: 141 VGEMLKKSKQRNTFELSGANGESVDPLDYTATYVFEDIINNLKVLTTDQINVKLTVAEVS 200

Query: 207 RDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
              L ++G  ++ T G S G +        G+FV++  DF+ + ++       V+ A   
Sbjct: 201 SSFLTELGVSYAETNGKSIGGA--------GQFVNKILDFTAEDIV------AVISASGN 246

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
            +  + LAEP L+ ISG+SASF  GG+ +  TV  + G  SVT  +YGV L     V   
Sbjct: 247 DSIGQVLAEPNLSVISGESASFLVGGE-IPITVRDNDG-ISVTYKEYGVKLSMVAKVTDS 304

Query: 326 GRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
             I L +  EVS  +   GVN+G   +PS R RKA TTV+L  G + VLAGLL  + Q+ 
Sbjct: 305 ENIRLSLLPEVSSIDKTNGVNSGLVSVPSLRTRKAQTTVQLKDGQSFVLAGLLTSEEQES 364

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
              IP L  IPILGALF  +   R +TE+ I AT  LV PV   D+  P
Sbjct: 365 LAKIPYLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKETDIKLP 413


>gi|238762407|ref|ZP_04623378.1| Type II/III secretion system protein [Yersinia kristensenii ATCC
           33638]
 gi|238699392|gb|EEP92138.1| Type II/III secretion system protein [Yersinia kristensenii ATCC
           33638]
          Length = 379

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 184/358 (51%), Gaps = 31/358 (8%)

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
           ++ ++ K  G A  IL   + + +    +L+   I      ++    +S+I +  +  + 
Sbjct: 5   SIIVYAKQEGTAEFILFNQNNQPIKKSAVLVNNTITAANKRIQIEYPESDIEINKIGTSY 64

Query: 146 VLHGMVRTIQDSQRAVEL-SETFLSQSG---RNQYANSSSKK-VMNLLNIAGEDQVTLKV 200
           +L GM  + +     V +  E   S+      +QY N+     ++N + + G +QV +K+
Sbjct: 65  ILTGMAESEEAKDTIVSIIGEAIGSKKTIDTDSQYLNTPEYYGIINKIKLMGTNQVNVKL 124

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF----VSEGGDFSVKGVLDRFSF 256
           TIAEV +D  + IG   S  G           DF G F    ++   +FS +G+      
Sbjct: 125 TIAEVTKDFSENIGVDWSTIG-----------DFSGSFQLVKLNSLNNFSARGI------ 167

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
             ++HA+   +  R LAEP L+ +SG+SASF  GG+     V+++  +T +T  ++G+ L
Sbjct: 168 SALVHAINDDSIARVLAEPNLSVLSGESASFLVGGE--IPMVNTTQNSTVITYKEFGIKL 225

Query: 317 HFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGL 373
           +    V    RI + +  EVS  + V  ++ G+  PS+R RKA TT+EL  G + +L GL
Sbjct: 226 NIGAKVNEKKRIRIMLDEEVSSIDKVFNIDGGNAYPSFRTRKAATTLELGDGESFILGGL 285

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           + +  ++  + IP +  IPILGA FRN+   + +TE+ + AT  LV+PV+ R++  P+
Sbjct: 286 ISNSERESLKKIPFIGDIPILGAFFRNAETRKNQTELVVVATVNLVRPVSEREVELPN 343


>gi|28900576|ref|NP_800231.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836379|ref|ZP_01989046.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810]
 gi|260877521|ref|ZP_05889876.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034]
 gi|260901740|ref|ZP_05910135.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037]
 gi|308095456|ref|ZP_05906034.2| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466]
 gi|308125917|ref|ZP_05777993.2| rough colony protein RcpA [Vibrio parahaemolyticus K5030]
 gi|28808956|dbj|BAC62064.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633]
 gi|149750281|gb|EDM61026.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810]
 gi|308087133|gb|EFO36828.1| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466]
 gi|308090527|gb|EFO40222.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034]
 gi|308108872|gb|EFO46412.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037]
 gi|308114419|gb|EFO51959.1| rough colony protein RcpA [Vibrio parahaemolyticus K5030]
          Length = 447

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/409 (30%), Positives = 202/409 (49%), Gaps = 38/409 (9%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           +  G+ +S+       + V  ++  V V+D   AD  V +   + ++G   G  ++I   
Sbjct: 21  VSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGKLVIYGIGRGATSIIAYD 80

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE- 162
             G ++ N ++++ + +  L+ T+     D +I++  + + +V+ G+V + +   +    
Sbjct: 81  RAGNEIYNAEVVVNKSLRLLKQTIIARYPDEDIKLTNIGEQIVIDGVVSSEEIKDKVYRH 140

Query: 163 LSETFLSQSGRNQY----ANSSS------------KKVMNLLNIAGEDQVTLKVTIAEVR 206
           + E       RN +    AN  S            + ++N L +   DQ+ +K+T+AEV 
Sbjct: 141 VGEMLKKSKQRNTFELSGANGESVDPLDYTATYVFEDIINNLKVLTTDQINVKLTVAEVS 200

Query: 207 RDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
              L ++G  ++ T G S G +        G+FV++  DF+ + ++       V+ A   
Sbjct: 201 SSFLTELGVSYAETNGKSIGGA--------GQFVNKILDFTAEDIV------AVISASGN 246

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
            +  + LAEP L+ ISG+SASF  GG+ +  TV  + G  SVT  +YGV L     V   
Sbjct: 247 DSIGQVLAEPNLSVISGESASFLVGGE-IPITVRDNDG-ISVTYKEYGVKLSMVAKVTDS 304

Query: 326 GRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
             I L +  EVS  +   GVN+G   +PS R RKA TTV+L  G + VLAGLL  + Q+ 
Sbjct: 305 ENIRLSLLPEVSSIDKTNGVNSGLVSVPSLRTRKAQTTVQLKDGQSFVLAGLLTSEEQES 364

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
              IP L  IPILGALF  +   R +TE+ I AT  LV PV   D+  P
Sbjct: 365 LAKIPYLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKETDIKLP 413


>gi|149176581|ref|ZP_01855194.1| putative outer membrane channel for pilus assembly CpaC
           [Planctomyces maris DSM 8797]
 gi|148844694|gb|EDL59044.1| putative outer membrane channel for pilus assembly CpaC
           [Planctomyces maris DSM 8797]
          Length = 590

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 175/384 (45%), Gaps = 34/384 (8%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           IL+ P  ++ V   DPT   V   +P  + +     G   +++   +GK +  L+  +  
Sbjct: 63  ILKFPGKIKRVDGFDPTVLSVSALTPNELRIQALVPGVTTLVITDENGK-VYTLETFVSG 121

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D  HL+  LR     S++    V D+VVL G V   +     VE++E F           
Sbjct: 122 DARHLQAYLRELFPTSSVTAIKVQDSVVLRGWVTEPEAITEMVEIAEQFFPNG------- 174

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF------QHSITGSSSG---PSKS 229
                V+N + +AG  QV LKV I EV+R  ++Q+G       Q     S+ G   P   
Sbjct: 175 -----VLNQMKLAGVQQVLLKVKIMEVQRSKIRQLGVNWLFLNQSGYAYSTPGTLVPITG 229

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFS-------FETVLHALERATAIRTLAEPTLTAISG 282
               FGG          + G    F        F+  + AL++   ++ LAEP L   SG
Sbjct: 230 INVPFGGPPALTASQNLISGTSLGFGLVDGSSIFQAFIEALKKEALLKILAEPELVTTSG 289

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
           + A+  SGG+     V  S G  ++   ++GV +   P VL  GR+ L +Q EVSE    
Sbjct: 290 RPANLLSGGEFPI-LVPQSLGTVTIEWREFGVRMEAVPIVLGNGRLRLEVQPEVSERDFS 348

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             + V    +P   VR+A+T VE+  G T+V+AGL+           P L ++P++GA F
Sbjct: 349 NAVQVAGTTVPGLTVRRANTAVEMNFGETMVIAGLISSRKTAETSKTPFLGELPVVGAAF 408

Query: 399 RNSRFNREETEIFIAATPFLVKPV 422
           R  R+   ETE+ I  TP LV P+
Sbjct: 409 RRVRYTEGETELVIMVTPELVSPL 432


>gi|78186671|ref|YP_374714.1| type II secretion system protein [Chlorobium luteolum DSM 273]
 gi|78166573|gb|ABB23671.1| type II secretion system protein [Chlorobium luteolum DSM 273]
          Length = 486

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 205/423 (48%), Gaps = 59/423 (13%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++ +G ++V   ++P  V  V V DP  AD ++ +P  +YL GK  G  N+ +    GK 
Sbjct: 38  RVPVGESRV--YRLPQPVTRVAVGDPEVADYIMLNPSEIYLLGKKTGSTNLTVWDRKGK- 94

Query: 109 MLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL---- 163
           + +  + + R++A ++  LR  +  ++ I++      +VL G       +  A  L    
Sbjct: 95  VSSRSLRVSRNVAPIQELLRVVLPGETGIQLYASGHALVLSGSASDAMAADTAYRLVIAY 154

Query: 164 ---------SETFL--------------SQSGRNQYANSS-----------------SKK 183
                     E+ L                SG +  A ++                 + +
Sbjct: 155 SGGTVPALNPESALLAGSAGASGSVGAPGISGIHDSAPAAPSALPGAAASRSPAARDTPR 214

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGP-SKSFAADFGGKFVSE 241
           V+NLL I    QV L+V IAEV R  ++ +G   +   GS+ G     F ++     + +
Sbjct: 215 VVNLLKIRDPQQVRLEVRIAEVSRSHIESLGIGWTQGRGSTQGSLMTGFVSNATLDLLLK 274

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G        +R + +    A ++   ++ LAEPT+ A+SG+   F  GG+ +Y     +
Sbjct: 275 TGGMPGSTEGNRLTVD----AEQKKGLVKILAEPTIVAMSGEEGYFLVGGK-VYTPTLGT 329

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAG---DMPSYRVRKAD 357
            G+       YGV L  TPTVL  GRI L++  EVSEP+   V AG    +P++++  A 
Sbjct: 330 NGSVDYVERTYGVGLRCTPTVLDSGRISLKVAPEVSEPLKEAVTAGTSTSLPAFKLSYAS 389

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTV++  G  +V+ GLL+D++ ++K  +PLLS IP+LG+LFR++  N+E TE+ +   P 
Sbjct: 390 TTVQMQEGENLVIGGLLRDNLTEVKRSVPLLSSIPVLGSLFRHTEMNKETTELMVIVRPT 449

Query: 418 LVK 420
           LVK
Sbjct: 450 LVK 452


>gi|260775653|ref|ZP_05884549.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608069|gb|EEX34238.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
          Length = 442

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 190/384 (49%), Gaps = 36/384 (9%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           ++  V VS+P  AD  V     + ++ K+ G++++I+    G  +L+  I + +    ++
Sbjct: 42  EIGTVFVSNPAVADYQVIDKHKVVIYSKSTGKSSLIVFDQSGNTILSRRIQVNKSADSIQ 101

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYANSSSKK 183
             LR    ++ +    V + VVL G V + Q   +  + + E     + R ++   +  +
Sbjct: 102 RYLRNHYPNAQVNAYYVGEQVVLSGTVSSEQVKDEIYIVVGEMLEKPANRQKFELETEDE 161

Query: 184 --------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                         V+N + +    QV +KV+IAEV +  L+QIG  +   G   G    
Sbjct: 162 SYEMKFMERREYDGVVNNIEVVVTKQVNVKVSIAEVSQKALEQIGVSYFSKGQVPG---- 217

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                 G FV+    FS   +L       +++A++  +  R LAEP L+  SG+SASF  
Sbjct: 218 -----SGVFVNAINAFSADDIL------MMINAIDNESVGRVLAEPNLSVTSGESASFLV 266

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD 347
           GG+     V++  G +SV+  ++GV L     V    +I L +  EVS  +     +  D
Sbjct: 267 GGE--LPVVTTIDGGSSVSYKEFGVRLELMAKVKRDNKITLSLVPEVSSLDSQYENDTYD 324

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           +P+ + R+A TTVEL  G + VL GLL  +D++ L + IPL+  IPILG LFRN+   R 
Sbjct: 325 LPALKTRRARTTVELGDGQSFVLGGLLSSEDMESLSK-IPLIGDIPILGTLFRNAETERN 383

Query: 407 ETEIFIAATPFLVKPVAMRDLSRP 430
           +TE+ I AT  LVKPV    +S P
Sbjct: 384 KTELIIVATVNLVKPVETSTISLP 407


>gi|148259497|ref|YP_001233624.1| type II and III secretion system protein [Acidiphilium cryptum
           JF-5]
 gi|146401178|gb|ABQ29705.1| type II and III secretion system protein [Acidiphilium cryptum
           JF-5]
          Length = 491

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 133/439 (30%), Positives = 198/439 (45%), Gaps = 40/439 (9%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           A  A +  ++    +G  I  G  ++I L+      +V V+DP    V   S  T+++FG
Sbjct: 50  ARHATMRPAEAARARGLTIEQGSGRLITLKG--SAANVFVADPGVVAVRPASAHTLFVFG 107

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDI---AHLEMTLRRFIADSNIRVEMVSDTVVLH 148
              G   V +    G  +  L + +       A +     R    + + +   ++ VV+ 
Sbjct: 108 TAPGFTTVAVTDAQGHAVATLHVAVTPKTYPAAAIRAGATRSAPGARLSISSAANGVVVR 167

Query: 149 GMVRT-IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
           G V T +QD Q         + Q+        +  KV+N   +    QV LKV IA++ R
Sbjct: 168 GNVPTPVQDYQ--------IMQQA---HLIAGTGAKVVNQTEVRLPQQVALKVRIAQMSR 216

Query: 208 DILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFE 257
            I +Q+G  +Q +  G S G    F   F    V  G        G ++    +   + +
Sbjct: 217 TITQQLGINWQSAGNGISVG---KFLFGFSALDVLNGSSPATPAAGSYNAGLSVGGGAID 273

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
           +VL AL        LAEPTLTA+SGQSASF  GG      V    G  +V    +GV L 
Sbjct: 274 SVLDALNSDNLAHILAEPTLTALSGQSASFIDGGSFPVP-VPGQNGQVTVQYKKFGVQLK 332

Query: 318 FTPTVLSPGRIGLRIQTEVSEPV------IGVNAGDM--PSYRVRKADTTVELPSGGTIV 369
           F P VL  G I L +Q  VS P       I V    +  PS   + A TTV + SG T+ 
Sbjct: 333 FRPVVLDNGSIILHVQPTVSSPTTQNAFQIAVAGTSIVVPSLSTQSASTTVVIGSGQTLA 392

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLS 428
           +AGLL +   Q  + +P L  +P+LGA FR+  +NR+E E+ I  TP+LVKPV     L 
Sbjct: 393 IAGLLSNSSNQTDKSVPGLGDMPVLGAAFRDDNYNRQEQELVILVTPYLVKPVNNAGQLM 452

Query: 429 RPDDHYSVEDDAKAFFFNR 447
            PD+ +S  +  +    +R
Sbjct: 453 TPDEGWSPPNQIQRIVLHR 471


>gi|302343419|ref|YP_003807948.1| type II and III secretion system protein [Desulfarculus baarsii DSM
           2075]
 gi|301640032|gb|ADK85354.1| type II and III secretion system protein [Desulfarculus baarsii DSM
           2075]
          Length = 466

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 178/385 (46%), Gaps = 40/385 (10%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++ +P  ++ V V+D T ADV+V +PR +Y+ G+  G  N+ +     + +    + + R
Sbjct: 42  LVDLPAPLKRVSVADETVADVLVINPRQIYVNGRKPGNTNITVWDRAERVIAAYAVGVGR 101

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+    R +    I V  +   +VL G V +    ++A  ++  F           
Sbjct: 102 DYTRLKAAFARVLPGEAIEVHELEGALVLAGSVSSESAREKAESIARLF----------- 150

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----------------FQHSITG 221
              ++V NLL +  + QV LK+  AEV R   K++                  F  ++TG
Sbjct: 151 -EKERVSNLLEVVDQKQVLLKLRFAEVNRQAAKRMNVNLGYWDPARPGNIFFTFLDNMTG 209

Query: 222 SSSGPSKSFAADFG-GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
             S      + +F     V   G  +  G      +   L  L++    + LAEP L  +
Sbjct: 210 PPSIDYSKGSIEFDLSANVGAWGGLNDSGR----QYMAFLDILKQNGLAKILAEPNLVCV 265

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-- 338
           SG+ A+F +GG+  +         T++    YGV L F P VL  G+I L ++ EVSE  
Sbjct: 266 SGKKANFLAGGE--FPIPVPGRDYTAIVFKKYGVQLTFLPKVLPNGKISLEVEPEVSELD 323

Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
             P +  +   +P    R+A T +EL  G    +AGLLK D+ +     P L  +PILGA
Sbjct: 324 YSPGVVTDGFVVPGLTTRRASTQLELGDGQGFAIAGLLKQDVTRSVSKWPFLGDLPILGA 383

Query: 397 LFRNSRFNREETEIFIAATPFLVKP 421
           LFR+S++   ETE+ I  TP +V+P
Sbjct: 384 LFRSSQYRNRETELLIVVTPHIVRP 408


>gi|32473554|ref|NP_866548.1| outer membrane channel for pilus assembly CpaC [Rhodopirellula
           baltica SH 1]
 gi|32398234|emb|CAD78329.1| putative outer membrane channel for pilus assembly CpaC
           [Rhodopirellula baltica SH 1]
          Length = 589

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 179/377 (47%), Gaps = 34/377 (9%)

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           +FGK  G   + L   + K +  +D+ +  D   +E  L   +  +++RV  + ++ ++ 
Sbjct: 99  VFGKTPGTTQINLWDTEDK-LYTIDVTVVADAREVEGILNSQLPLASLRVTPIGESAIIS 157

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G V ++ D  +AV ++E F +              V+N + + G  QV L   I EV R 
Sbjct: 158 GYVTSVDDVDKAVAITEQFYT-------------TVINNIQVVGIQQVLLHTKIMEVSRT 204

Query: 209 ILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGGDFSVKGVLD---RFS----FE 257
            L+++G   +I   +    +GPS     D G   V     F    + D   RF+    FE
Sbjct: 205 KLRELGVDLAILDDNFTLLNGPSGVL--DVGAGIVEGDAGFGPIPLGDTNLRFNVNGNFE 262

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
           T+++AL      + LAEPT+ A  G+ A FT GG+ +   V    G   +T  DYG  + 
Sbjct: 263 TLINALHEQRLTKLLAEPTVVATHGRPARFTVGGR-IPTIVPGQNGQVQITYEDYGTSID 321

Query: 318 FTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           F P V+ PGRI L ++ EVSEP     + VN  ++ ++  R  +T VE+ +G T  LAGL
Sbjct: 322 FLPFVVGPGRIRLEVRPEVSEPDPSRAVTVNGTNVTAFTTRYVETAVEMQAGQTFALAGL 381

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR--PD 431
           L+   +      P    +P +G LFR  +  R E E+ I  TP LV+ +   ++ R  P 
Sbjct: 382 LQSRTESTTSRTPFFGSLPYVGTLFRKMQERRNEIELLILVTPELVEAMDPHEVPRGGPG 441

Query: 432 DHYSVEDDAKAFFFNRV 448
            +    DD + + +  +
Sbjct: 442 MNSHSPDDKEFYLYGHI 458


>gi|319782173|ref|YP_004141649.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317168061|gb|ADV11599.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 481

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 202/425 (47%), Gaps = 31/425 (7%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           DV      +I + +++ + +QV  ++ D++V D   AD    + RT+Y+ GK  G   V 
Sbjct: 34  DVSTPAVHRIFLPMSQSVTIQVSANLGDIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVN 93

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L   D + +  L I +  D++ +   +R+    S I V  V+  V L G V+        
Sbjct: 94  LFSTDKRSLGALQIEVGVDVSDMAQAIRQVAPKSRIEVGSVNGRVRLGGHVKDGATLAAI 153

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---H 217
           + +++         QY   +   V+N + +    QV L+V + E +R+  + +G      
Sbjct: 154 MAVAQ---------QYGPDA---VINSVIVDDSQQVNLEVRVLEAKRNTGRDLGVSIKSR 201

Query: 218 SITGSSSGPSKSFAADFGGKFVSEG-------------GDFSVKGVLDRFSFETVLHALE 264
           +  G++   +   A D  G  +  G             G    + +      + ++ ALE
Sbjct: 202 NGDGTTRTGTGVAAVDEDGVVLGPGGLLSGLLSNSAPFGALITRVIDSNIKVDLIIEALE 261

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
              A+RTLA P LT +SG+ ASF +GG+   +T+    G  S+    +GV L FTP VL 
Sbjct: 262 SKGAVRTLANPNLTTLSGEQASFNAGGEVPIRTLDKD-GEISIVYKQFGVNLLFTPVVLD 320

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            G+I + +  EVS+      AGD P +  RK  T VEL  G +  + GLL     +L++ 
Sbjct: 321 DGKIHMNLAPEVSDLTGFTTAGD-PIFTNRKLATVVELRDGQSFAVGGLLSSKTTKLQDQ 379

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAF 443
           +P L ++P++G LFR+S   +EETE+ +  TP +V+PV     L+ P D     +D + F
Sbjct: 380 VPWLGQVPVIGTLFRSSSNQKEETELVVIVTPHIVRPVKPGEQLATPFDKTRPANDPEFF 439

Query: 444 FFNRV 448
              ++
Sbjct: 440 VLGQL 444


>gi|220922532|ref|YP_002497834.1| type II and III secretion system protein [Methylobacterium nodulans
           ORS 2060]
 gi|219947139|gb|ACL57531.1| type II and III secretion system protein [Methylobacterium nodulans
           ORS 2060]
          Length = 479

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 133/435 (30%), Positives = 201/435 (46%), Gaps = 52/435 (11%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++ + +NK   ++V     D+L+     A+V+  S +T+Y+ GK VG  NV L+  + K 
Sbjct: 16  RVRVPVNKSQTMRVVAPFSDILIGASKIAEVIPLSDQTLYILGKEVGTTNVSLVDANKKV 75

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           +  +D+ +  D  ++   +        +R     D  VL G       + RAV       
Sbjct: 76  IGVVDVEVGLDAGNIGAKVLGGSGARGVRFTTEGDKAVLTGTAEDAVAADRAVA------ 129

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPS 227
                   +N +   VMN+  +    QV LKV   E+ R   + +G +   T  S +G S
Sbjct: 130 ------LASNLAPGGVMNMTTVRSTQQVMLKVRFIEIDRTAGRDLGVRWEGTNRSVAGRS 183

Query: 228 KSFAADFGGKFVSEGGDF---------SVKGV---------LDRFSFETV---------- 259
            + AA       + GG+          +V G            +F+   +          
Sbjct: 184 GTVAATPEALTTAPGGNGIGLLSNAIPAVAGAALSTVAAPQFGQFAARLINSNSAKVDLF 243

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGV 314
           + ALE     R LAEP L A SGQ A F +GG++   T SSS GA  V T      ++GV
Sbjct: 244 ISALETQGLARRLAEPNLVASSGQPAEFLAGGEYPIPTASSS-GALGVPTITVTFKEFGV 302

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVL 370
            L FTPTVLS G I L+++ EVSE  P I VN G   +P    R+A T +E+  G +  +
Sbjct: 303 RLTFTPTVLSNGLINLQLEPEVSEIDPAISVNTGLVTVPGLSKRRARTNIEMRDGQSFAI 362

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSR 429
           AGLL+   ++  E +P L  IP+LGALF +  F + +TE+ +  TP LVKP    + L+ 
Sbjct: 363 AGLLQAVNEKNLEQLPWLGSIPVLGALFSSKEFRQRDTELVVIVTPHLVKPSKPGQPLAT 422

Query: 430 PDDHYSVEDDAKAFF 444
           P D     +DA  F 
Sbjct: 423 PLDTRMPTNDADYFL 437


>gi|312883754|ref|ZP_07743473.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368503|gb|EFP96036.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 460

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 200/410 (48%), Gaps = 44/410 (10%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + + + +N+  ++ +  D + + +S+   AD    +   + +FG   G A + ++    +
Sbjct: 25  EPLEVNINEAKMINLSQDAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITILNAQER 84

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + N  I +  D   L+  +     ++++  E +   + L G V T   +   V +++ +
Sbjct: 85  VIYNNKIRVVHDTKELDSLIAAQFPEASVHSESLGGKLWLKGNVPTPVMAHSIVSVAKGY 144

Query: 168 LS---------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           LS                S  +   N +  +++N L +    QV ++V IAEV R++  +
Sbjct: 145 LSPVTANAQSEKGSTSPDSSTHSRGNENEDELINQLVVTMPTQVNIRVRIAEVSRNVSNK 204

Query: 213 IGFQHSITGSSSGPSKSF----AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
           +G +    G   G   SF    A D     VS  G  ++ G++D         AL     
Sbjct: 205 LGIKWGSVGEGIG---SFLYTKAWD-----VSSWGKPTLSGLVD---------ALASDGT 247

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           +  LAEP LTA+SG+ ASF  GG+     ++  T   +V    +GV L+FTP VL P RI
Sbjct: 248 MSILAEPNLTAMSGEEASFLVGGEIPLPLINGDTA--TVEYKPFGVNLNFTPVVLGPDRI 305

Query: 329 GLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKE 383
            LR+  EVS   +     +N    PS+  R+A TT+EL SG +  L GLL+  +I QL++
Sbjct: 306 SLRVSPEVSSVSVSNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQK 365

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
            +P    IPILG LFR++ + R+ETE+ I AT +LV+PV    L  P D+
Sbjct: 366 -LPGAGDIPILGGLFRSNEYQRKETELIIIATAYLVEPVRNDTLPLPTDN 414


>gi|90412176|ref|ZP_01220182.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           3TCK]
 gi|90326900|gb|EAS43285.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           3TCK]
          Length = 461

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 197/404 (48%), Gaps = 47/404 (11%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           + LN    L+   ++  V VS P   D  V   R + +F   +GQA VI+ G D + +L+
Sbjct: 34  VTLNDANNLEFSQEIGTVFVSQPDILDYKVIDSRKLVIFSNKIGQAKVIVYGKDNQVLLS 93

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
               ++ +++ +   L+ +  D +I V  V + V + G V   +       +  T LS+ 
Sbjct: 94  QRYHVDINLSQVRRQLKLYYPDLSISVTSVGEQVAIRGTVNNEKQRDDIYRMVATLLSKK 153

Query: 172 GRNQY----------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
              +Y                       N + + ++  L +A   QV +K+++A+V ++ 
Sbjct: 154 EIERYNEAEKLKFVESGFEEANWVRYSKNYTWEGIIEGLVVAQAQQVNVKISVAQVTKEF 213

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            + IG   S  G S G   SF  +F      +  D S           TV++A+      
Sbjct: 214 NETIGVDWSTVGRSVGEF-SFL-EF------KANDLS-----------TVINAIGNDNIA 254

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             LAEP LT +SG+SASF  GG+     + ++  +T+++  ++G+ L  +  VLS  +I 
Sbjct: 255 EILAEPNLTVLSGESASFLVGGE--VPVIVTNDNSTNISFKEFGIKLELSAKVLSNKKIK 312

Query: 330 LRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIP 386
           L++  EVS     V A   ++P    R+A TT++L  G + +L GL+  DDI+++ + IP
Sbjct: 313 LQLAPEVSAVDGYVKAAGIEVPQLSSRRAMTTIQLADGDSFMLGGLMSSDDIEEISK-IP 371

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           LL  IPILGA FR S   R++TE+ I AT  LVKPV+  D+  P
Sbjct: 372 LLGDIPILGAAFRKSSTTRKKTELVIVATVNLVKPVSPTDVRLP 415


>gi|51597670|ref|YP_071861.1| outer membrane secretin family protein [Yersinia pseudotuberculosis
           IP 32953]
 gi|186896808|ref|YP_001873920.1| type II and III secretion system protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590952|emb|CAH22610.1| putative outer membrane secretin family protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699834|gb|ACC90463.1| type II and III secretion system protein [Yersinia
           pseudotuberculosis PB1/+]
          Length = 439

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 192/390 (49%), Gaps = 31/390 (7%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + IG + +I +Q  +D   V VS    AD  +    ++ ++ K  G A   L   + + +
Sbjct: 37  LPIGGSHIIKMQEEIDT--VFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNKNHQPI 94

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT--IQDSQRAV--ELSE 165
               +L+   I      +R    DS I +  + ++ +L G   T   +D+  ++  E + 
Sbjct: 95  SKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIASIVGEATA 154

Query: 166 TFLSQSGRNQY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           +   +     Y +N   + V+N + +   +QV +K+TI E+ +D  + IG   +   S++
Sbjct: 155 SKKEKEREESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNSIKSAA 214

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G  +    +F  + +S                 T++HA+      + LAEP L+ +SG+ 
Sbjct: 215 GAFQFL--NFNAQSIS-----------------TLVHAINDEAIAKVLAEPNLSVLSGEY 255

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342
           ASF  GG+     VS++    SV   ++G+ L+    V    RI + +  EVS  + V  
Sbjct: 256 ASFLVGGE--IPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSIDKVFN 313

Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +  GD  PS R+RKA+TTVEL  G + +L GL+    ++  + IP +  +P+LGALFRN+
Sbjct: 314 LRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGALFRNA 373

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +  R ++E+ + AT  LVKPV+ R +  PD
Sbjct: 374 QTQRNQSELVVVATVNLVKPVSARQIELPD 403


>gi|283787693|ref|YP_003367558.1| tight adherence secretin RcpA [Citrobacter rodentium ICC168]
 gi|282951147|emb|CBG90838.1| putative tight adherence secretin RcpA [Citrobacter rodentium
           ICC168]
          Length = 482

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/414 (28%), Positives = 202/414 (48%), Gaps = 44/414 (10%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           D+  + +SDP  AD  V + + + ++ KN G  ++I+ G +   +L   I ++  ++ + 
Sbjct: 51  DLDTIFISDPRVADYKVVNNKNIIVYAKNTGTTDLIVYGRNNTVLLKHSISVDPFLSDIN 110

Query: 125 MTLRRFIADSNIRV------EMVSDTVV--LHGMVRTIQDSQRAV-ELSETFLSQSGRNQ 175
             + R    ++I V         +D VV  ++G V T ++S  A+ +L  + ++ SG  +
Sbjct: 111 QRVARLFPGNSIEVTRFMGGATAADKVVYIINGSV-TDEESMDAIYQLVGSIVNSSGGEE 169

Query: 176 YANSSSKK-------------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
             N S+ K                   V+N + +   +QV + +T+ EV +     +G  
Sbjct: 170 KDNKSANKRVVDSKINTDLIEKKKYANVINKMQLVASNQVNVHLTVVEVSKTFTDALGID 229

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSV---KGVLDRFSFETVLHALERATAIRTLA 273
            S    SS  +       GG  ++  G F++   KG  D  +  TV++A++  +  R +A
Sbjct: 230 WSSLTLSSIVN-------GGASINNPGTFNLLGFKGGFDAKNISTVINAIQNDSVARIMA 282

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           +P LT +SG++A F  GG+    + +S    T+VT  +YG+ L     V    +I L + 
Sbjct: 283 QPNLTVLSGETADFLVGGEIPILSKNSDNEGTTVTYKEYGIKLSIAAKVEKKSKIKLSLS 342

Query: 334 TEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            E+S        NA  +P+   R++ +T+EL  G +  + GLL +   +    +P +  I
Sbjct: 343 NEISSISGAYSFNAYSIPTLTTRRSSSTIELADGDSFAIGGLLTEKDYETLGKVPFIGDI 402

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFF 444
           PILGAL RNS   RE+TE+ I AT  LVKPVA  RD+  P+  Y+   + K FF
Sbjct: 403 PILGALARNSNTQREKTELVIFATVNLVKPVASNRDIVLPE--YNKTSNNKLFF 454


>gi|21673269|ref|NP_661334.1| type II secretion system protein [Chlorobium tepidum TLS]
 gi|21646357|gb|AAM71676.1| type II secretion system protein [Chlorobium tepidum TLS]
          Length = 445

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/413 (31%), Positives = 201/413 (48%), Gaps = 59/413 (14%)

Query: 53  GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL 112
           G ++V  L VP   + V V DP  AD ++ SP  +YL GK  G  N+I+ G +G      
Sbjct: 16  GESRVYRLAVPA--KRVAVGDPAIADFIMISPSELYLSGKKTGATNLIVWGKNG-NFTTA 72

Query: 113 DILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--- 168
            +++ R++  ++  LR  +  + +I++    D +VL G V     ++ A+ L +TFL   
Sbjct: 73  PLVVSRNVKPIQDLLRAVLPKEHDIQLYSSGDALVLAGSVSNALAAETAIRLVKTFLGGT 132

Query: 169 ------------------------SQSGRN------------QYANSSSKKVMNLLNIAG 192
                                   S SG                A+S     +NLL I  
Sbjct: 133 VPDVTPEATLTKKSEAATGTSGGTSISGMTGVASAAGMSGAATVASSGIHGFINLLKIRD 192

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
             QV L+V IAEV +  ++ +GF  +   GS++G S          FVS     +   +L
Sbjct: 193 PQQVRLEVRIAEVSKSYMEALGFSWTQGVGSTAGSS------LMTGFVSN----ATLNLL 242

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
            + S    + A  +   I+ LAEPT+ A+SGQ   F  GG+ +Y    +  GA       
Sbjct: 243 LKNSGNLKVEADSQKNWIKMLAEPTIVAMSGQEGYFLVGGK-IYTPTPTGNGAVDYQERT 301

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTVELPSGGT 367
           YGV L FTPTVL  GRI L++  EVSEP     +     ++P+++V  A TTVE+  G  
Sbjct: 302 YGVGLRFTPTVLDAGRISLKVAPEVSEPDSQFQSAGSLYNLPAFKVSAASTTVEMNEGQN 361

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +V+ GLLKD + +  E +PLL ++P+LGALFR++  + E+ E+ +   P LVK
Sbjct: 362 LVIGGLLKDKLTETIEAVPLLGQLPLLGALFRHTSMDSEKVEVIVIVRPTLVK 414


>gi|84385704|ref|ZP_00988735.1| rough colony protein RcpA [Vibrio splendidus 12B01]
 gi|84379684|gb|EAP96536.1| rough colony protein RcpA [Vibrio splendidus 12B01]
          Length = 447

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 195/392 (49%), Gaps = 36/392 (9%)

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           + +  ++  V V++   AD  + +   + ++G   G  ++I     G ++ N ++++ + 
Sbjct: 37  INIKRNIDTVFVANSQIADYKIIANGKLVIYGIGRGATSIIAYDRAGNEIYNAEVVVNKS 96

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-RNQY-- 176
           +  L+ TL     D NI++  + + VVL G+V + +       L    + +S  R+ +  
Sbjct: 97  LRLLKQTLVARYPDENIKLTNIGEQVVLDGVVSSEEVKANVYRLVGEMMKKSKERHTFEL 156

Query: 177 --ANSSS------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             AN  S            + ++N L +   +Q+ +K+T+AEV    L ++G  ++    
Sbjct: 157 SGANGESVDALDFTATYVFQDIINNLKVLTTEQINVKLTVAEVSSSFLTELGVSYA---E 213

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           S+G S   A    G FV++  DF+ + ++       V+ A       R LAEP L+ ISG
Sbjct: 214 SNGKSIGGA----GTFVNKILDFTAQDIV------AVISASGNDNIGRVLAEPNLSVISG 263

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPV 340
           +SASF  GG+ +   V  + G  S+T  +YGV L     V     I L +  EVS  +  
Sbjct: 264 ESASFLVGGE-IPIAVRDNDGV-SITYKEYGVKLSMVAKVTDSENIRLSLLPEVSSIDKA 321

Query: 341 IGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            GVN+G   +PS R RKA TTV+L  G + VLAGLL  + Q+    IPLL  IPILGALF
Sbjct: 322 NGVNSGLISVPSLRTRKAQTTVQLKDGQSFVLAGLLTTEEQESLSRIPLLGDIPILGALF 381

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
             +   R +TE+ I AT  LV PV   ++  P
Sbjct: 382 SKTNTERRKTELIIVATVNLVDPVKEDEIKLP 413


>gi|330862294|emb|CBX72455.1| hypothetical protein YEW_HH31870 [Yersinia enterocolitica W22703]
          Length = 271

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 141/250 (56%), Gaps = 18/250 (7%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           MN + + G +QV +K+TIAEV +D  + IG   S  G+ SG  + F  +   KF ++G  
Sbjct: 1   MNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSGSFQFFKLNGSNKFNAKG-- 58

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                         ++HA+   +  R LAEP L+ +SG+SASF  GG+     V+++  +
Sbjct: 59  -----------ISALVHAINDDSIARVLAEPNLSVLSGESASFLVGGE--LPLVNTTANS 105

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD-MPSYRVRKADTTVE 361
           T +T   +G+ L+    V +  RI +++  EVS  + V  ++ GD  PS+R RKA TT+E
Sbjct: 106 TVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNIDGGDAYPSFRTRKAATTLE 165

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L  G + +L GL+    ++  + IP +  IPILGA FRN+   + +TE+ + AT  LV+P
Sbjct: 166 LGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFRNAETRKNQTELVVVATVNLVRP 225

Query: 422 VAMRDLSRPD 431
           V+ +++  P+
Sbjct: 226 VSEKEVELPN 235


>gi|153833257|ref|ZP_01985924.1| general secretion pathway protein D [Vibrio harveyi HY01]
 gi|148870528|gb|EDL69443.1| general secretion pathway protein D [Vibrio harveyi HY01]
          Length = 456

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 196/407 (48%), Gaps = 49/407 (12%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    + V   +  V +S+P  AD  V +  T+ +F   +GQ+ +I+ G D   +L
Sbjct: 34  SITLNDGQHISVKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQSRLIVYGIDEDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ D+  +   L+    D+ + V+ V + V + G+V + +       L  T L +
Sbjct: 94  SDRIIVDLDLTEIRRQLKFHFPDAKVTVQSVGEQVAVGGVVDSEETRDEIYRLVATLLGR 153

Query: 171 SG------------RNQYA------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
                         ++ YA            N + K ++  + +A   QV +K+++A+V 
Sbjct: 154 EKTEKWDKTYKFEFKSDYAQYEEPEGMIFARNMTWKGIVERIQVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               K +G   S  GSS G           +FV +          D  +  T++ AL   
Sbjct: 214 ESFGKTVGVDWSSVGSSVG-----------EFVFDQ--------FDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                LAEP LT +SG+SASF  GG+     + S+    +++  ++G+ L  T  VLS  
Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGE--VPVIVSTNNNVNISFKEFGIKLDLTAKVLSQD 312

Query: 327 RIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKE 383
           +I +++  EVSE    V A    +P    R+A TTVEL  G + +L GL+   D++++++
Sbjct: 313 KIRMQLAPEVSEVESYVEAAGVKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            IP +  IPILGA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 373 -IPFVGDIPILGAAFRKATTERKRTELIIVATVNLVEPIKPKDVQLP 418


>gi|170022934|ref|YP_001719439.1| type II and III secretion system protein [Yersinia
           pseudotuberculosis YPIII]
 gi|169749468|gb|ACA66986.1| type II and III secretion system protein [Yersinia
           pseudotuberculosis YPIII]
          Length = 423

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 189/390 (48%), Gaps = 31/390 (7%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + IG + +I +Q  +D   V VS    AD  +    ++ ++ K  G A   L   + + +
Sbjct: 21  LPIGGSHIIKMQEEIDT--VFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNKNHQPI 78

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL---SET 166
               +L+   I      +R    DS I +  + ++ +L G   T +       +   +  
Sbjct: 79  SKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIANIVGEATA 138

Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
              +  R ++  SS   + V+N + +   +QV +K+TI E+ +D  + IG   +   S++
Sbjct: 139 SKKEKEREEHYQSSPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNSIKSAA 198

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G  +    +F  + +S                 T++HA+      + LAEP L+ +SG+ 
Sbjct: 199 GAFQFL--NFNAQSIS-----------------TLVHAINDEAIAKVLAEPNLSVLSGEY 239

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342
           ASF  GG+     VS++    SV   ++G+ L+    V    RI + +  EVS  + V  
Sbjct: 240 ASFLVGGE--IPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSIDKVFN 297

Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +  GD  PS R+RKA+TTVEL  G + +L GL+    ++  + IP +  +P+LGALFRN+
Sbjct: 298 LRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGALFRNA 357

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +  R ++E+ + AT  LVKPV+ R +  PD
Sbjct: 358 QTQRNQSELVVVATVNLVKPVSARQIELPD 387


>gi|153948843|ref|YP_001399594.1| type II/III secretion system protein [Yersinia pseudotuberculosis
           IP 31758]
 gi|152960338|gb|ABS47799.1| type II/III secretion system protein [Yersinia pseudotuberculosis
           IP 31758]
          Length = 439

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 188/382 (49%), Gaps = 31/382 (8%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           I++   ++  V VS    AD  +    ++ ++ K  G A   L   + + +    +L+  
Sbjct: 44  IIKTQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNKNHQPISKTRVLVNN 103

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT--IQDSQRAVELSETFLSQSGRNQ- 175
            I      +R    DS I +  + ++ +L G   T   +D+  ++ + E   S+  + + 
Sbjct: 104 TINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTITSI-IGEATASKKEKERE 162

Query: 176 ---YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
               +N   + V+N + +   +QV +K+TI E+ +D  + IG   +   S++G  +    
Sbjct: 163 ESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNSIKSAAGAFQFL-- 220

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           +F  + +S                 T++HA+      + LAEP L+ +SG+ ASF  GG+
Sbjct: 221 NFNAQSIS-----------------TLVHAINDEAIAKVLAEPNLSVLSGEYASFLVGGE 263

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD-MP 349
                VS++    SV   ++G+ L+    V    RI + +  EVS  + V  +  GD  P
Sbjct: 264 --IPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSIDKVFNLRGGDSYP 321

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           S R+RKA+TTVEL  G + +L GL+    ++  + IP +  +P+LGALFRN++  R ++E
Sbjct: 322 SLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGALFRNAQTQRNQSE 381

Query: 410 IFIAATPFLVKPVAMRDLSRPD 431
           + + AT  LVKPV+ R +  PD
Sbjct: 382 LVVVATVNLVKPVSARQIELPD 403


>gi|312116090|ref|YP_004013686.1| type II and III secretion system protein [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221219|gb|ADP72587.1| type II and III secretion system protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 519

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 198/408 (48%), Gaps = 48/408 (11%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + LN+   ++V     + LV++   ADVV  +  ++ + GK +G   + L+  D + +
Sbjct: 74  VRVVLNRSENVKVEYPFTEALVTNSDIADVVPLTNASINILGKKIGNTRLSLLDQDKRVI 133

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
             +DI +  D+  L   +R   + SN+RV  V+  +++ G         RA+ L+E F  
Sbjct: 134 GIVDIEVSHDVDMLRRVMRDNPSFSNLRVAAVNGRIMIAGQASDAVALSRALALAEQF-- 191

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI-------------------- 209
                     +  +V N + +A   QV L+V   E  R++                    
Sbjct: 192 ----------APGQVTNAMTVASPQQVMLEVRFIEASRNLARGVGVNVSGGGRYAGGTTG 241

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFG---GKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           ++ +  + SIT  S+G + +  +D     G  +   G  + + +      +  + ALE  
Sbjct: 242 VETLKEKSSITSDSTGITTNLISDLAAGLGSNLVPFGAMTGRVIGGSAPIDVTIRALESQ 301

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              R LAEP L A+SG +ASF +GG+  +  V+ +    +     +G+ L FTPTVL+  
Sbjct: 302 GLARRLAEPNLVALSGDTASFLAGGEFPFP-VAGTNNTITTEFKKFGIGLAFTPTVLARR 360

Query: 327 RIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD----DI 378
           +I L+I+ EVSE      + +   ++P   VR+A TTVEL  G +  +AGL++     D 
Sbjct: 361 QINLKIEPEVSEIDYSAAVKIGNVEVPGLSVRRASTTVELRDGQSFAIAGLMQGFHNADT 420

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +QL    P +  +PILGAL R++ F ++ET++ I  TP LV+P+   D
Sbjct: 421 RQL----PWIGDVPILGALTRSTSFQKKETDLVIIVTPCLVQPMVPGD 464


>gi|156977409|ref|YP_001448315.1| Flp pilus assembly protein, secretin CapC [Vibrio harveyi ATCC
           BAA-1116]
 gi|156529003|gb|ABU74088.1| hypothetical protein VIBHAR_06196 [Vibrio harveyi ATCC BAA-1116]
          Length = 456

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 188/389 (48%), Gaps = 49/389 (12%)

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           V +S+P  AD  V +  T+ +F   +GQA +I+ G D   +L+  I+++ D+  +   ++
Sbjct: 52  VFISNPDVADYKVINDTTLVVFANGIGQARLIVYGIDEDVLLSDRIIVDLDLTDVRRQIK 111

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG------------RNQY 176
               D+ + V+ + + V + G V + +       L  T L +              ++ Y
Sbjct: 112 FNFPDAKVTVQSIGEQVAVSGFVDSEETRDEIYRLVATLLGREKIKKWDKADKFEFKSDY 171

Query: 177 A------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           A            N S + ++  + +A   QV +K+++A+V     K +G   S  GSS 
Sbjct: 172 AQYEAPEGMIFARNMSWRGIVERIEVATTQQVNVKISVAQVTESFGKTVGVDWSSVGSSV 231

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G           +FV +          D  +  T++ AL        LAEP LT +SG+S
Sbjct: 232 G-----------EFVFDQ--------FDAANLSTLITALGNDQVAEVLAEPNLTVLSGES 272

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           ASF  GG+     + S+    +++  ++G+ L  T  VLS  +I +++  EVSE    V 
Sbjct: 273 ASFLVGGE--VPVIISTNNNVNISFKEFGIKLDLTAKVLSKDKIRMQLAPEVSEVESYVE 330

Query: 345 AG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNS 401
           A    +P    R+A TTVEL  G + +L GL+   D++++++ IP +  IPILGA FR +
Sbjct: 331 AAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK-IPFVGDIPILGAAFRKA 389

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRP 430
              R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 390 MTERKRTELIIVATVNLVEPIKPKDVQLP 418


>gi|78186537|ref|YP_374580.1| type II secretion system protein [Chlorobium luteolum DSM 273]
 gi|78166439|gb|ABB23537.1| type II secretion system protein [Chlorobium luteolum DSM 273]
          Length = 461

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 206/448 (45%), Gaps = 53/448 (11%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + +G ++V  L+ P+  + V V +P  AD ++ +   +YL GK  G  N+IL    G   
Sbjct: 25  VPVGESRVYRLEQPI--KRVAVGNPEVADYIMLNSSELYLLGKKTGATNLILWDQKGNCT 82

Query: 110 LNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
             L + + R++  ++  L+  +  +++I++      +VL G       ++ A  L + +L
Sbjct: 83  STL-LQVSRNVYPIKKLLKTALPKETDIQIFASGPALVLAGSASNSLAAESAYRLVKAYL 141

Query: 169 ------------------------SQSGRNQ-------YANSSSKK------VMNLLNIA 191
                                   S SG           A S+S        ++NLL + 
Sbjct: 142 GGTVPGVNPESSLSNSGSGSAAPASMSGTQNSSYAAPVIATSASTAPAGMSGLVNLLTVR 201

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV L+V IAEV +  ++ +G      G + G   +  +   G FVS      +    
Sbjct: 202 DTQQVRLEVRIAEVSKSYIETLGL-----GWTQGVGNTQGSLMTG-FVSNATLNLLLQTK 255

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                   + A  +   I+ LAEPT+ A+SGQ   F  GG+ +Y    S+ GA       
Sbjct: 256 SNPGNRLDMDAERKEGLIKILAEPTMVAMSGQEGYFLVGGK-VYTPTLSTNGAVDYVERT 314

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGT 367
           YGV L FTP VL  GRI L++  EVSEP    V    +G +P ++   A +TV++  G  
Sbjct: 315 YGVGLRFTPVVLDSGRISLKVAPEVSEPLKEAVTAGTSGPLPGFKTSFASSTVQMREGEN 374

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +V+ GLL+D++ ++   +PLL+ IPILG+LFR++  + E TE+ +   P L+K  + +  
Sbjct: 375 LVIGGLLRDNLTEVVRAVPLLADIPILGSLFRHTEKSSETTELMVIIRPTLIK-ASDKAP 433

Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
             P D +     ++ F   ++    G K
Sbjct: 434 ELPTDRFVPPSSSELFIEGKLQSSRGSK 461


>gi|197335194|ref|YP_002155269.1| general secretion pathway protein D [Vibrio fischeri MJ11]
 gi|197316684|gb|ACH66131.1| general secretion pathway protein D [Vibrio fischeri MJ11]
          Length = 436

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 180/379 (47%), Gaps = 33/379 (8%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           ++  V +S+P  AD  +     + LFG+ VG +  I     G+++LN  I++ R+ + +E
Sbjct: 41  EIGSVFISNPKVADYKIIDKYKVVLFGREVGDSVFIAFDVQGRELLNKKIIVSRNYSGIE 100

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK- 183
             ++     S+I +  +    V+ G V   +D  +  E+  T L     +  A     + 
Sbjct: 101 QQVKLRFPTSDIDIFAIGTNAVVSGTVLNEEDRDQIYEMVATLLFDDNADNNAQDDRTEL 160

Query: 184 ----------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
                     V+N + +A   QV +K+TIAEV    ++  G +    G +          
Sbjct: 161 TYMDKLNFEGVVNQIEVARTKQVNVKLTIAEVSHSFMQDFGIKVGSNGQA---------- 210

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             G FV +   FS   ++      +V+ A+   +  + LAEP L+ ISG+ ASF  GG+ 
Sbjct: 211 --GIFVDQLVHFSASDIV------SVITAVGTDSVGQVLAEPNLSVISGEDASFLVGGE- 261

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSY 351
               V+   GAT+V   ++GV L  T  V    +I L +   VS  +     +  ++PS 
Sbjct: 262 -LPVVTVIDGATNVQYKEFGVKLDLTAKVERDDKIKLALAPSVSSLDTQYANDNYNLPSL 320

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R A TTVEL  G + VL GLL  + ++    IP +  IPILGALFR++   R +TE+ 
Sbjct: 321 KTRSARTTVELGDGQSFVLGGLLNSEEKESLTRIPFVGDIPILGALFRHTGTERNKTELI 380

Query: 412 IAATPFLVKPVAMRDLSRP 430
           I AT  LV+PV    +  P
Sbjct: 381 IVATVNLVQPVKANQIQLP 399


>gi|149188846|ref|ZP_01867136.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
 gi|148837266|gb|EDL54213.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
          Length = 453

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 187/394 (47%), Gaps = 53/394 (13%)

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           +  V VSDP   D  V +  ++ +F K VGQA +++ G   K + +  I+ + D++ +  
Sbjct: 46  ITKVFVSDPDIVDYNVINENSIVIFSKAVGQARLMIYGESEKLLYSERIIADIDLSQVRR 105

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY--------- 176
            +     D+++++E V + V + G+V + ++      L  T L +    ++         
Sbjct: 106 QVALLFPDTSVKIESVGNQVAVSGIVNSERERDDIYRLVATLLGREKLEKWDKVQKLKFQ 165

Query: 177 ---------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
                           N +   ++  L +A   QV +K+++A+V     + +G   S   
Sbjct: 166 NDNISIEEPESMIFERNMTWDGIIERLEVATVQQVNVKISVAQVTERFAETVGVDWS--- 222

Query: 222 SSSGPSKSFAADFGGKFVS--EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                  SF A+ G       E  D +           T++ AL      + LAEP LT 
Sbjct: 223 -------SFGANVGQFLFQQFEAADLT-----------TLITALGNENVAQVLAEPNLTV 264

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           ISG+SASF  GG+     + S+    ++T  ++G+ L  T  VL+  +I +++  EVSE 
Sbjct: 265 ISGESASFLVGGE--VPVIVSTNNNVNITFKEFGIKLDLTAKVLTEEKIRMQLFPEVSEI 322

Query: 340 VIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGA 396
              + A   ++P    R+A TT+EL  G + VL GL+   D +++++  PL+  IP+LGA
Sbjct: 323 ERYIRAAGIEVPQLATRRAMTTIELGDGDSFVLGGLMSSADFEEIQK-TPLIGDIPVLGA 381

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            FR S  +R  TE+ I AT  LVKP+  +D+  P
Sbjct: 382 AFRKSSTDRRRTELIIVATVNLVKPMKRKDIQLP 415


>gi|221213139|ref|ZP_03586115.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD1]
 gi|221167352|gb|EED99822.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD1]
          Length = 443

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 121/385 (31%), Positives = 179/385 (46%), Gaps = 50/385 (12%)

Query: 66  VQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQANVILI--GHDGKQMLNLDILIERDI 120
           +Q V V DP  ADV++        + +  K  G  NV+L   G D   + N++++     
Sbjct: 43  LQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGATNVMLWERGRDEPTVWNVEVVDAAAH 102

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           A L+        DS  RV     T VL G   ++   +RAV +        G+N    S 
Sbjct: 103 AVLD--------DSTPRVNTYGGTSVLRGTAASLDAHERAVAV--------GKNV---SG 143

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAAD 233
              V++   +AG++ V + V + E  R +LKQ+GF         S    S G  +S+   
Sbjct: 144 KGAVIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQSNGFSFGSFSPGGVQSYN-- 201

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHA-----------LERATAIRTLAEPTLTAISG 282
            GG      G     G     +F  V++A           LE     R LAEPTL A+SG
Sbjct: 202 -GGAGPGSAGYLPTLGAPVASAFNLVVNAAGRGIFADLSLLEANNLARVLAEPTLVALSG 260

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
           QSASF +GG+    +     G+T++    YGV L  TPTVLSP RI L++  E S+    
Sbjct: 261 QSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLSPQRIALKVAPESSQLDFV 319

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             + ++   +P    R+ADTTVEL  G + V+ GL+          +PLL  +PI+G  F
Sbjct: 320 NSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFF 379

Query: 399 RNSRFNREETEIFIAATPFLVKPVA 423
           +N  + + + E+ I  TP LV P+A
Sbjct: 380 KNLNYQQNDKELLIIVTPHLVAPIA 404


>gi|221197781|ref|ZP_03570827.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD2M]
 gi|221204661|ref|ZP_03577678.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD2]
 gi|221175518|gb|EEE07948.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD2]
 gi|221181713|gb|EEE14114.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD2M]
          Length = 443

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 121/385 (31%), Positives = 179/385 (46%), Gaps = 50/385 (12%)

Query: 66  VQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQANVILI--GHDGKQMLNLDILIERDI 120
           +Q V V DP  ADV++        + +  K  G  NV+L   G D   + N++++     
Sbjct: 43  LQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGATNVMLWERGRDEPTVWNVEVVDAAAH 102

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           A L+        DS  RV     T VL G   ++   +RAV +        G+N    S 
Sbjct: 103 AVLD--------DSTPRVNTYGGTSVLRGTAASLDAHERAVAV--------GKNV---SG 143

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAAD 233
              V++   +AG++ V + V + E  R +LKQ+GF         S    S G  +S+   
Sbjct: 144 KGTVIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQSNGFSFGSFSPGGVQSYN-- 201

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHA-----------LERATAIRTLAEPTLTAISG 282
            GG      G     G     +F  V++A           LE     R LAEPTL A+SG
Sbjct: 202 -GGAGPGSAGYLPTLGAPVASAFNLVVNAAGRGIFADLSLLEANNLARVLAEPTLVALSG 260

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
           QSASF +GG+    +     G+T++    YGV L  TPTVLSP RI L++  E S+    
Sbjct: 261 QSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLSPQRIALKVAPESSQLDFV 319

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             + ++   +P    R+ADTTVEL  G + V+ GL+          +PLL  +PI+G  F
Sbjct: 320 NSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFF 379

Query: 399 RNSRFNREETEIFIAATPFLVKPVA 423
           +N  + + + E+ I  TP LV P+A
Sbjct: 380 KNLNYQQNDKELLIIVTPHLVAPIA 404


>gi|187923645|ref|YP_001895287.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
 gi|187714839|gb|ACD16063.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
          Length = 468

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 187/403 (46%), Gaps = 48/403 (11%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV---HSPRTMYLFGKNVGQA 97
           D+ +G  ++I++G            +Q V + DP+ ADV++        + L GK  G  
Sbjct: 55  DLTVGAQRQIAVGHT----------LQRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTT 104

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           N++L   D    L   + +    A         +      V+++  T ++ G   T++  
Sbjct: 105 NLMLWSRDRDAPLQYTVNVTTPAAA------SLLGADTPAVKVLGGTAIVSGTSATMEAH 158

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ- 216
           QRAV  +E  L + G           V +   +A    V + V + E  R +LK++GF  
Sbjct: 159 QRAVVAAEGSLGKDG----------AVFDTSTVASRAVVQVDVRVVEFSRSVLKEVGFNF 208

Query: 217 ----HSITGSSSGPSK-SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL-------E 264
               +  T  S  PS  S  +   G+  S  G   +    +   F +  H L       E
Sbjct: 209 FKQNNGFTFGSFAPSALSSVSATAGQAPSLTGVTPISSAFNLI-FNSATHGLFANLSLLE 267

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                R LAEPTL A+SGQSASF +GG+ +   V  + G+TS+    YGV L  TPTVLS
Sbjct: 268 SNNLARVLAEPTLVALSGQSASFLAGGE-VPIPVPQALGSTSIEFKPYGVGLTLTPTVLS 326

Query: 325 PGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           P RI L++  E S+      + ++   +P++  R+ADTTVEL  G + V+ GL+  +   
Sbjct: 327 PQRIALKVAPEASQLDFANAVTISGVSVPAFTTRRADTTVELGDGESFVIGGLIDRETAS 386

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
               +PLL  +P++G  F+   + + E E+ I  TP LV P+A
Sbjct: 387 NVSKVPLLGDLPVIGTFFKQLNYQQNEKELVIIVTPHLVSPLA 429


>gi|197106489|ref|YP_002131866.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium
           zucineum HLK1]
 gi|196479909|gb|ACG79437.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium
           zucineum HLK1]
          Length = 438

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 177/376 (47%), Gaps = 26/376 (6%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + I +  +K +  ++      ++VS P  A V   S R+ Y+ G   G  N+++ G  G+
Sbjct: 38  RSIHVPRDKSLSFRLAQPAARIVVSQPEIAKVTATSDRSFYVQGLEFGSTNMLVYGPGGR 97

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            +  LDI +  D   L+  L     +  +RV  + + ++L G V       +A  +++ +
Sbjct: 98  LLEVLDIRVGYDAEGLQQDLAAAFPNEPLRVRNLGEALMLTGEVTDTGVQYKAEAIAQRY 157

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                       +   +++ +++    QV L+V + E  R  L+ IG + +I       +
Sbjct: 158 ------------APDGLISRVSVRASQQVVLEVRVLEATRSALQDIGVEGAIG------N 199

Query: 228 KSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
            S+A  FG   +      G   + G       + +L ALE    +RTLA P L AI GQ 
Sbjct: 200 NSWAVAFGNGLIGASPAAGALGISGGWGDTRIDLMLTALEEKGVVRTLARPNLVAIPGQK 259

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340
           A+F +GG++ Y  V       S+    YGV L FTP V   G I L ++ EVS+      
Sbjct: 260 ATFHAGGEYPYP-VPQRDDLISLEFRKYGVELTFTPVVQDNGLIRLDVEPEVSQLDFTNS 318

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           + V    +P   VR+  TTVEL  G ++ + GL + +       +P +  +P+LG+LFR+
Sbjct: 319 LRVQGFTVPGLIVRRTHTTVELKPGESLAIGGLFQREYTNALRQVPGIGDVPVLGSLFRS 378

Query: 401 SRFNREETEIFIAATP 416
           +R+ + ETE+ +  TP
Sbjct: 379 ARWKKAETELVVIVTP 394


>gi|254506218|ref|ZP_05118362.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
 gi|219551036|gb|EED28017.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
          Length = 431

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 196/399 (49%), Gaps = 34/399 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++G  +   +    ++  V +SDP  AD  V     + +FGK VG  +++    + + +
Sbjct: 12  MNLGEGEAKAINTKAEIASVFISDPQIADYQVVDKNKLVIFGKKVGTVSLLAFDDNSETI 71

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           ++  +++ + + H++  ++    D +I +  + + VVL G V + +       L    L+
Sbjct: 72  ISRKLVVNQSLIHIQQQVQIRYPDVSISIYNLGEQVVLAGKVPSEKIRDEINILVGELLN 131

Query: 170 QS----------GRNQY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           +           G N Y          K ++N + ++   QV +K++IAEV +  L+Q G
Sbjct: 132 KEYEDYKIEWDLGENTYEMEFMTRRHYKGIVNNIEVSTTKQVNVKLSIAEVSQSFLEQFG 191

Query: 215 FQHSITGSSSGPSKSFAADF-GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
            ++    SS        A+F GG FV +  +FS   ++      +V+ A+      + LA
Sbjct: 192 VKYGTLDSS--------ANFMGGTFVDQLINFSAADIV------SVISAIGDDAVGQVLA 237

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           EP L+ ISG++ASF  GG+     V+   G T+V   ++G+ L     VL   +I L + 
Sbjct: 238 EPNLSVISGETASFLVGGE--IPVVTVVDGGTNVLFKEFGIRLEMMAKVLQDDKIKLSLM 295

Query: 334 TEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            EVS  +     +   +P+ + R+A TTVEL  G + VL GLL  + ++    +P +  +
Sbjct: 296 PEVSSLDTQYQNDRYSLPALKTRRARTTVELGDGQSFVLGGLLSTEDRESLSRVPFIGDV 355

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           PILGALFR++   R +TE+ I AT  LVKPV    +  P
Sbjct: 356 PILGALFRHTETVRNKTELVIVATVNLVKPVNPSQIQLP 394


>gi|218459699|ref|ZP_03499790.1| cpaC pilus assembly Q protein [Rhizobium etli Kim 5]
          Length = 409

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 121/390 (31%), Positives = 194/390 (49%), Gaps = 53/390 (13%)

Query: 42  VEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           V +GK  + +++  N+ + L       D+++      DVV  S R++++ GK +G  N+ 
Sbjct: 42  VTLGKSVQHVTLPPNETLTLNTGQPFGDLVIGSADMIDVVPLSDRSLFVRGKKIGATNIS 101

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           + G D   +  +DI +  D + +   +R     + +RV   +D + L G+VR   + QR 
Sbjct: 102 VYGDDKSLLGVIDIRVASDFSEVASAIRSAAPSARVRVVNSNDRIRLVGVVRDGIELQRV 161

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           +E+++++            S + V+N L ++   QV L+V I E  R   + +G   S  
Sbjct: 162 LEIAQSY------------SEQPVLNQLRVSDSQQVMLEVRIIEASRQTGRDLGIGWSGQ 209

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------------------RFSFET 258
           GS+ G  K+  +   G  V++ G+ + + +LD                        + + 
Sbjct: 210 GSN-GIGKATTSQ--GITVNDDGNLA-RTLLDPKGAATGMLPFGQLIAKVLQISGGNIDV 265

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVL 316
           V++ALE+   +R LA+P L A+SG +ASF +GG+   L  T + +T AT      +GV L
Sbjct: 266 VINALEQKGLVRRLAQPNLIAMSGSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRL 325

Query: 317 HFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            F P VL  G I L I+ EVSE  P I VN    P +  R A TTV L  G +  +AGLL
Sbjct: 326 TFKPVVLDDGVINLEIEPEVSELDPAINVNGN--PGFISRAASTTVALRDGQSFAMAGLL 383

Query: 375 KD----DIQQLKEGIPLLSKIPILGALFRN 400
           +     DIQQL    P L +IP+LGALFR+
Sbjct: 384 QSINAKDIQQL----PGLGQIPVLGALFRS 409


>gi|59711120|ref|YP_203896.1| general secretion pathway protein D [Vibrio fischeri ES114]
 gi|59479221|gb|AAW85008.1| general secretion pathway protein D [Vibrio fischeri ES114]
          Length = 436

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 180/379 (47%), Gaps = 33/379 (8%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           ++  V +S+P  AD  +     + LFG+ VG +  I     G+++LN  I++ ++ + +E
Sbjct: 41  EIGSVFISNPKVADYKIIDKYKVVLFGREVGDSVFIAFDVQGRELLNKKIIVSKNYSGIE 100

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK- 183
             ++     S+I +  +    V+ G V   +D  +  E+  T L     +  A     + 
Sbjct: 101 QQVKLRFPTSDIDIFAIGTNAVVSGTVLNEEDRDQIYEMVATLLFDDNADNNAQDDRTEL 160

Query: 184 ----------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
                     V+N + +A   QV +K+TIAEV    ++  G +    G +          
Sbjct: 161 TYMDKLNFEGVVNQIEVARTKQVNVKLTIAEVSHSFMQDFGIKVGSNGQA---------- 210

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             G FV +   FS   ++      +V+ A+   +  + LAEP L+ ISG+ ASF  GG+ 
Sbjct: 211 --GIFVDQLVHFSASDIV------SVITAVGTDSVGQVLAEPNLSVISGEDASFLVGGE- 261

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSY 351
               V+   GAT+V   ++GV L  T  V    +I L +   VS  +     +  ++PS 
Sbjct: 262 -LPVVTVIDGATNVQYKEFGVKLDLTAKVERDDKIKLALAPSVSSLDTQYANDNYNLPSL 320

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R A TTVEL  G + VL GLL  + ++    IP +  IPILGALFR++   R +TE+ 
Sbjct: 321 KTRSARTTVELGDGQSFVLGGLLNSEEKESLTRIPFVGDIPILGALFRHTGTERNKTELI 380

Query: 412 IAATPFLVKPVAMRDLSRP 430
           I AT  LV+PV    +  P
Sbjct: 381 IVATVNLVQPVKANQIQLP 399


>gi|260778162|ref|ZP_05887055.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606175|gb|EEX32460.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
          Length = 469

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 201/415 (48%), Gaps = 34/415 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + +N+  ++++    + + +S+   AD    +   + +FG   G A + ++    + +
Sbjct: 27  LEVNINEAKMIRLSEKAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITVLNEQERVI 86

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            +  I +  D   L+  ++    D+++  E +   + L G V T   +   V +++ +LS
Sbjct: 87  YSNKIRVVHDTQELDELIKAQFPDASVNSESLGGKLWLKGSVPTPVMAHSIVNVAKGYLS 146

Query: 170 QSGRNQYANSS--------------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
                Q +N++                      +++N L +    QV +++ IAEV R++
Sbjct: 147 PIVAPQESNNNDSSKSSNSSESNSENQQNSNGDELINQLVVTMPTQVNIRIRIAEVSRNV 206

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
             ++G +    GS      +     G    ++  D S  G   + +   ++ AL     +
Sbjct: 207 SNKLGIKW---GSLVTNGSTVENTVGSFLYNKPWDVSSWG---KPNLSALVDALASTGDM 260

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             LAEP LTA+SG+ A+F  GG+     +   T   +V    +GV L+F P VL P RI 
Sbjct: 261 SILAEPNLTAMSGEEANFLVGGEVPIPLIQGDTA--TVEYKPFGVNLNFKPVVLGPDRIS 318

Query: 330 LRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEG 384
           L+++ EVS   +     +N   +PS+  R+A TT+EL SG +  L GLL+  +I+QL++ 
Sbjct: 319 LKVEPEVSSVSVDNQAVLNGNVLPSFTSRRASTTIELASGQSFALGGLLQSSEIEQLQK- 377

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
           +P +  IPILG LFR++ + R ETE+ I AT +LV+P    +L  P D    + D
Sbjct: 378 LPGMGDIPILGGLFRSNEYQRRETELIIIATAYLVEPTRSDNLPIPTDALIPQSD 432


>gi|320158383|ref|YP_004190761.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus MO6-24/O]
 gi|319933695|gb|ADV88558.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus MO6-24/O]
          Length = 441

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 186/386 (48%), Gaps = 41/386 (10%)

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           +  V V DP  AD  +     + ++G   G  +VI+    G ++ N ++++ + +  ++ 
Sbjct: 42  ISTVFVGDPEIADYKIIDETKVVVYGVGQGATSVIVYDRAGNELYNAEVVVNKSLRLVKQ 101

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMV----------RTIQDSQRAVELSETFLSQSGRNQ 175
           TL     D +I +  V + VVL G+V          RT+ +  +     +TF  +     
Sbjct: 102 TLIARFPDESINITNVGEQVVLDGVVSSDEIKTQIYRTVGEMLKKNSTRDTFTLKDANGD 161

Query: 176 YANSSS-------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
             +S           ++N L +   +Q+ +K+T+AEV    L ++G  +S +G +     
Sbjct: 162 EVDSLDYTATYIYDNIINNLKVLTTEQINVKLTVAEVSSSFLSELGVSYSDSGQA----- 216

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                  G+FV++  DF+ + ++       V+ A       R LAEP L+ ISG++ASF 
Sbjct: 217 -------GRFVNKLLDFTAQDIV------AVITASGDDQIGRVLAEPNLSVISGETASFL 263

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVN 344
            GG+ +   +    G T ++  +YGV L     V     I L +  EVS    E      
Sbjct: 264 VGGE-IPIAIRDEDGIT-ISYKEYGVKLSMVAKVTDSENIRLSLLPEVSSIDEENKTANG 321

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
             ++P+ R RKA TTV+L  G + VLAGLL  + ++    IP+L  IPILGALF +++ N
Sbjct: 322 LINVPALRTRKAQTTVQLKDGQSFVLAGLLTSEERESLSKIPVLGDIPILGALFSHTKSN 381

Query: 405 REETEIFIAATPFLVKPVAMRDLSRP 430
           + +TE+ I AT  LV PV   D+  P
Sbjct: 382 QTKTELIIVATVNLVDPVKAEDIKLP 407


>gi|163801677|ref|ZP_02195575.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
 gi|159174594|gb|EDP59396.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
          Length = 456

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 191/407 (46%), Gaps = 49/407 (12%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    + V   +  V +S+P  AD  V +  T+ +F K VG + +++ G +   +L
Sbjct: 34  SITLNDGKHISVKQPIGKVFISNPDIADYKVINDTTLVVFAKGVGHSRLLVYGANEDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ D+  +   L+    D+ + V+ V + V + G+V + +       L    L +
Sbjct: 94  SDRIIVDLDLTQIRRQLKFHFPDAKVTVQSVGEQVAVSGVVDSEETRDAIYRLVANLLGR 153

Query: 171 SGRNQYANSSSKK------------------------VMNLLNIAGEDQVTLKVTIAEVR 206
               ++ +SS +                         ++  + +A   QV +K+++A+V 
Sbjct: 154 EKTEKWESSSKRSFKSDHGTFEEPESMIFARNMTWEGIIEQIQVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               K +G   +  GSS G    F  D                  D  +  T++ AL   
Sbjct: 214 ESFGKTVGVDWNSVGSSVG---GFVFD----------------QFDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                LAEP LT +SG+SASF  GG+     + S    T+++  ++G+ L     VLS  
Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGE--VPVIISDANGTNISFKEFGIKLDLAAKVLSQD 312

Query: 327 RIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKE 383
           +I +++  EVSE    V A    +P    R+A TTVEL  G + +L GL+   D++++++
Sbjct: 313 KIRMQLAPEVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            IP +  IPILGA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 373 -IPFIGDIPILGAAFRRATTERKRTELIIVATVNLVEPIKPKDVHLP 418


>gi|27365651|ref|NP_761179.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6]
 gi|27361799|gb|AAO10706.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6]
          Length = 462

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 203/430 (47%), Gaps = 35/430 (8%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            K+I + + +  ++ +  +++ V + D T ADV   S R+  +FG  VG+ +++++G +G
Sbjct: 23  AKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKTPSARSALVFGAKVGKTDLVIVGKEG 82

Query: 107 KQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           + + +  + ++   ++ LE  L        I ++ V D++ + G V + + +   + L  
Sbjct: 83  EAIAHYRLNVKNSGLSQLERHLETLYPSHRITLQSVGDSIAVAGTVASPEMAADILSLVN 142

Query: 166 TF----LSQSGRNQYANSSSKK-----------------VMNLLNIAGEDQVTLKVTIAE 204
            F    ++   R +  N+ + +                 V+N L I    QV + + + E
Sbjct: 143 NFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIRMVE 202

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHAL 263
           + +   +++G    I   S  P+       G +F + G D +    ++   +F  ++ AL
Sbjct: 203 MAKSTSEELG----IRWQSVNPNWMLGVSPGNQFAT-GIDLTDPDNLIKESAFMGIIDAL 257

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
              + +  LAEP LTA SG+ A F  GG+  + ++   +    V    +GV L  TPTVL
Sbjct: 258 ASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPTVL 315

Query: 324 SPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           S  RI L +   VS    +  I +N  D+P    R A TT+EL  G +  LAGLL+   +
Sbjct: 316 SENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTSEE 375

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVED 438
              + IP L ++P +GALFR ++  + E E+ I AT  LV+P   +  +  P DH+    
Sbjct: 376 NSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRAPT 435

Query: 439 DAKAFFFNRV 448
             +   F  +
Sbjct: 436 RLERLLFGEL 445


>gi|37680194|ref|NP_934803.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
 gi|37198941|dbj|BAC94774.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
          Length = 462

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 203/430 (47%), Gaps = 35/430 (8%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            K+I + + +  ++ +  +++ V + D T ADV   S R+  +FG  VG+ +++++G +G
Sbjct: 23  AKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKTPSARSALVFGAKVGKTDLVIVGKEG 82

Query: 107 KQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           + + +  + ++   ++ LE  L        I ++ V D++ + G V + + +   + L  
Sbjct: 83  EAIAHYRLNVKNSGLSQLEHHLETLYPSHRITLQSVGDSIAVAGTVASPEMAADILSLVN 142

Query: 166 TF----LSQSGRNQYANSSSKK-----------------VMNLLNIAGEDQVTLKVTIAE 204
            F    ++   R +  N+ + +                 V+N L I    QV + + + E
Sbjct: 143 NFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIRMVE 202

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHAL 263
           + +   +++G    I   S  P+       G +F + G D +    ++   +F  ++ AL
Sbjct: 203 MAKSTSEELG----IRWQSVNPNWMLGVSPGNQFAT-GIDLTDPDNLIKESAFMGIIDAL 257

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
              + +  LAEP LTA SG+ A F  GG+  + ++   +    V    +GV L  TPTVL
Sbjct: 258 ASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPTVL 315

Query: 324 SPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           S  RI L +   VS    +  I +N  D+P    R A TT+EL  G +  LAGLL+   +
Sbjct: 316 SENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTSEE 375

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVED 438
              + IP L ++P +GALFR ++  + E E+ I AT  LV+P   +  +  P DH+    
Sbjct: 376 NSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRAPT 435

Query: 439 DAKAFFFNRV 448
             +   F  +
Sbjct: 436 RLERLLFGEL 445


>gi|251791991|ref|YP_003006711.1| RcpA [Aggregatibacter aphrophilus NJ8700]
 gi|247533378|gb|ACS96624.1| RcpA [Aggregatibacter aphrophilus NJ8700]
          Length = 460

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 196/395 (49%), Gaps = 33/395 (8%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114
           ++Q    +  + VS P+ AD  +    T  ++ K+ G+A V   G DG+ +    +N+D 
Sbjct: 41  LVQTKEKIDTIFVSSPSVADYEILDDNTFIIYAKDEGKAEVTAFGADGRPLTSDTVNVDS 100

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163
           ++  +IA     L+    ++N+ V+ V    V+ G  RT ++S   +R V        ++
Sbjct: 101 VV-TNIADTNKQLKTHFPNTNLSVKKVGKAYVIEGKARTQEESDEVRRIVGEALGTGRKV 159

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGS 222
           +ET L           S + V++  NI    Q+ +K+T+ EV + + + +G   S I GS
Sbjct: 160 TETKLGNESVPFLDKYSYEGVVDHSNINDTTQINVKLTVVEVNKKLSEAMGINWSHIAGS 219

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAI 280
             GP        GG F + GG    +GVL  D       ++AL+  +  + LAEP ++ +
Sbjct: 220 --GPL------LGGNFSAAGGFNGTQGVLRLDAKGISAFINALDNQSNGKILAEPNISML 271

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           SG++A    GG+  +       G+ S+   ++GV L     +    RI L +   VS   
Sbjct: 272 SGETADILVGGEIPFAQ-RDKEGSPSIIYKEFGVKLAVAAKLQKNNRIRLVLDQSVSTLA 330

Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIPLLSKIPILGA 396
              N    G++P +  R+A +  E+ +G + ++ GL   +D++ + + +PLL  +PILG+
Sbjct: 331 GNYNFEGIGNIPYFDTRRAKSLFEVANGESFIIGGLFSSNDVEGINK-VPLLGDVPILGS 389

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
            FRN+  NRE+ E+ I AT  +VKPV  +++  PD
Sbjct: 390 FFRNASTNREKKELVIVATVNVVKPVEEKNIVYPD 424


>gi|320156053|ref|YP_004188432.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus
           MO6-24/O]
 gi|319931365|gb|ADV86229.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus
           MO6-24/O]
          Length = 462

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 203/430 (47%), Gaps = 35/430 (8%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            K+I + + +  ++ +  +++ V + D T ADV   S R+  +FG  VG+ +++++G +G
Sbjct: 23  AKQIDLEVGQSRLIPLSQEMRSVYIVDSTIADVKTPSARSALVFGAKVGKTDLVIVGKEG 82

Query: 107 KQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           + + +  + ++   ++ LE  L        I ++ V D++ + G V + + +   + L  
Sbjct: 83  EAIAHYRLNVKNSGLSQLERHLETLYPSHRIALQSVGDSIAVAGTVASPEMAADILSLVN 142

Query: 166 TF----LSQSGRNQYANSSSKK-----------------VMNLLNIAGEDQVTLKVTIAE 204
            F    ++   R +  N+ + +                 V+N L I    QV + + + E
Sbjct: 143 NFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIRMVE 202

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHAL 263
           + +   +++G    I   S  P+       G +F + G D +    ++   +F  ++ AL
Sbjct: 203 MAKSTSEELG----IRWQSVNPNWMLGVSPGNQFAT-GIDLTDPDNLIKESAFMGIIDAL 257

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
              + +  LAEP LTA SG+ A F  GG+  + ++   +    V    +GV L  TPTVL
Sbjct: 258 ASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPTVL 315

Query: 324 SPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           S  RI L +   VS    +  I +N  D+P    R A TT+EL  G +  LAGLL+   +
Sbjct: 316 SENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTSEE 375

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVED 438
              + IP L ++P +GALFR ++  + E E+ I AT  LV+P   +  +  P DH+    
Sbjct: 376 NSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRAPT 435

Query: 439 DAKAFFFNRV 448
             +   F  +
Sbjct: 436 RLERLLFGEL 445


>gi|206559894|ref|YP_002230658.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|198035935|emb|CAR51827.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 443

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 136/425 (32%), Positives = 201/425 (47%), Gaps = 56/425 (13%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-V 80
           S   +PP+ +A      IS + IG  ++I+ G            +Q V V DP+ ADV V
Sbjct: 13  SALAMPPLSDAADTSGTIS-LAIGAQRQIATGR----------ALQRVAVGDPSVADVLV 61

Query: 81  VHSPRT-MYLFGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           V   R  + L  KN G  NV++   G D   + N+++             R  +  ++  
Sbjct: 62  VKGGRGGVLLVAKNAGATNVMIWERGRDEPTVYNVNVT--------SGAARALLDGTSPS 113

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           V     T V+ G   T+   QRAV  ++T   + G    A++          I+G++ V 
Sbjct: 114 VNTYGGTTVIGGAAGTLDGHQRAVHAAKTVGGKDGTTLDAST----------ISGKNVVQ 163

Query: 198 LKVTIAEVRRDILKQIG---FQHSITGSSSG---PS--KSFAADFGGKF-------VSEG 242
           + V + E  R +LKQ G   F+ S  G S G   P+   S +   GG         +S  
Sbjct: 164 VDVRVVEFSRSVLKQAGLNFFKQS-NGFSFGAFAPTGLTSISGTPGGSLTYNTSVPISSA 222

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            +  V  V  R  F   L  LE     R LA+PTL A+SGQSA+F +GG+ +   V  S 
Sbjct: 223 FNLVVNSV-SRGLFAD-LSILEANNLARVLAQPTLVALSGQSANFLAGGE-IPVPVPQSL 279

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADT 358
           G  S+    YGV L  TPTVLSP RI L++  E S+      I +N+  +P+   R+ADT
Sbjct: 280 GTISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRRADT 339

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TVEL  G + V+ GL+  +       +P L  +PI+GA F+N  + + + E+ I  TP L
Sbjct: 340 TVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVTPHL 399

Query: 419 VKPVA 423
           V P+A
Sbjct: 400 VAPIA 404


>gi|148975962|ref|ZP_01812751.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium
           SWAT-3]
 gi|145964707|gb|EDK29960.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium
           SWAT-3]
          Length = 456

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 196/407 (48%), Gaps = 49/407 (12%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    +Q    +  V +++P+  D  + +  T+ +F  +VGQ+ +I+ G D   +L
Sbjct: 34  SITLNDGQHIQFKSPIGQVFINNPSIVDYKIINDNTLVVFANSVGQSRLIVYGVDDDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ ++  +   L+    D+ ++V+ V + V + G+V +         L  T L +
Sbjct: 94  SDRIIVDLNLTDIRRQLKFHFPDAKVKVQSVGEQVAVSGVVDSEATRDDIYRLVATLLGR 153

Query: 171 SGRNQY------------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++                         N + + ++  + +A   QV +K+++A+V 
Sbjct: 154 DKTEKWDKTQKLEFKSDSSDYEEPESMVFARNMTWEGIIERIEVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               + +G   S  GSS G           +FV +          D  +  T++ AL   
Sbjct: 214 ESFGQTVGVDWSTVGSSVG-----------EFVFDQ--------FDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                LAEP LT +SG+SASF  GG+     + S++   +++  ++G+ L  T  VLS  
Sbjct: 255 QIAEVLAEPNLTVLSGESASFLVGGE--VPVIVSTSSNVNISFKEFGIKLDLTAKVLSQD 312

Query: 327 RIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKE 383
           +I +++  EVSE    V A    +P    R+A TTVEL  G + VL GL+   D++++++
Sbjct: 313 KIRMQLAPEVSEVEGYVEAAGIKVPQLASRRAMTTVELADGDSFVLGGLMSSADLEKMQK 372

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            IP +  IP+LGA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 373 -IPFVGDIPVLGAAFRKATTERKRTELIIVATVNLVEPMKPKDIQLP 418


>gi|119566857|gb|ABL84265.1| RcpA [Yersinia ruckeri]
          Length = 438

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 188/377 (49%), Gaps = 33/377 (8%)

Query: 65  DVQDVLVSDPTK-ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           D  D + S  TK AD  +    ++ ++ K  G A   L     K +  + + +++ I+  
Sbjct: 49  DEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKKNKPIHKVAVFVDKIISKA 108

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE--LSETFLSQSGRNQ---YAN 178
           +  +R    DS I +  + +  +L G  +T ++++  +E  ++    S   R +   Y  
Sbjct: 109 KKRIRIEYPDSQININKLGEGYILTGTAQT-EEARETIEKIVANAIGSVPVRQEKWGYTI 167

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            S   + N + I   +QV +K+TIAEV +D    IG   S  G+ SG S  F     GK 
Sbjct: 168 HSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIGNVSG-SFHFTQFNAGKI 226

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                              T++ A+   +  R LAEP L+ +SG++ASF  GG+     V
Sbjct: 227 ------------------STLVQAINDESVARVLAEPNLSVLSGETASFLVGGE--LPIV 266

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD-MPSYRVRK 355
           S++    +V+  ++G+ L+    V    RI +++  EVS  + +  V+ G   P+ R RK
Sbjct: 267 STTQNTINVSYKEFGIKLNIGAKVSESKRIRVKLDEEVSSLDKMFNVDGGSSYPALRTRK 326

Query: 356 ADTTVELPSGGTIVLAGLL-KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           A TTVEL  G + +L GL+ ++D + LK+ IPL+  IPILGALFR +    + +E+ + A
Sbjct: 327 AGTTVELGDGESFILGGLISREDKENLKK-IPLIGDIPILGALFRKTGTQTKRSELVVIA 385

Query: 415 TPFLVKPVAMRDLSRPD 431
           T  LVKP+  +D+  PD
Sbjct: 386 TVNLVKPMQSKDVGLPD 402


>gi|238755450|ref|ZP_04616790.1| Type II/III secretion system protein [Yersinia ruckeri ATCC 29473]
 gi|238706291|gb|EEP98668.1| Type II/III secretion system protein [Yersinia ruckeri ATCC 29473]
          Length = 430

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 188/377 (49%), Gaps = 33/377 (8%)

Query: 65  DVQDVLVSDPTK-ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           D  D + S  TK AD  +    ++ ++ K  G A   L     K +  + + +++ I+  
Sbjct: 41  DEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKKNKPIHKVAVFVDKIISKA 100

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE--LSETFLSQSGRNQ---YAN 178
           +  +R    DS I +  + +  +L G  +T ++++  +E  ++    S   R +   Y  
Sbjct: 101 KKRIRIEYPDSQININKLGEGYILTGTAQT-EEARETIEKIVANAIGSVPVRQEKWGYTI 159

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            S   + N + I   +QV +K+TIAEV +D    IG   S  G+ SG S  F     GK 
Sbjct: 160 HSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIGNVSG-SFHFTQFNAGKI 218

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                              T++ A+   +  R LAEP L+ +SG++ASF  GG+     V
Sbjct: 219 ------------------STLVQAINDESVARVLAEPNLSVLSGETASFLVGGE--LPIV 258

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD-MPSYRVRK 355
           S++    +V+  ++G+ L+    V    RI +++  EVS  + +  V+ G   P+ R RK
Sbjct: 259 STTQNTINVSYKEFGIKLNIGAKVSESKRIRVKLDEEVSSLDKMFNVDGGSSYPALRTRK 318

Query: 356 ADTTVELPSGGTIVLAGLL-KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           A TTVEL  G + +L GL+ ++D + LK+ IPL+  IPILGALFR +    + +E+ + A
Sbjct: 319 AGTTVELGDGESFILGGLISREDKENLKK-IPLIGDIPILGALFRKTGTQTKRSELVVIA 377

Query: 415 TPFLVKPVAMRDLSRPD 431
           T  LVKP+  +D+  PD
Sbjct: 378 TVNLVKPMQSKDVGLPD 394


>gi|107022594|ref|YP_620921.1| type II and III secretion system protein [Burkholderia cenocepacia
           AU 1054]
 gi|116689543|ref|YP_835166.1| type II and III secretion system protein [Burkholderia cenocepacia
           HI2424]
 gi|170732847|ref|YP_001764794.1| type II and III secretion system protein [Burkholderia cenocepacia
           MC0-3]
 gi|105892783|gb|ABF75948.1| type II and III secretion system protein [Burkholderia cenocepacia
           AU 1054]
 gi|116647632|gb|ABK08273.1| type II and III secretion system protein [Burkholderia cenocepacia
           HI2424]
 gi|169816089|gb|ACA90672.1| type II and III secretion system protein [Burkholderia cenocepacia
           MC0-3]
          Length = 443

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 133/428 (31%), Positives = 198/428 (46%), Gaps = 62/428 (14%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-V 80
           S   +PP+ +A      IS + IG  ++I+ G            +Q V V DP+ ADV V
Sbjct: 13  SALAMPPLSDAADTSGTIS-LAIGAQRQIATGR----------ALQRVAVGDPSVADVLV 61

Query: 81  VHSPRT-MYLFGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           V   R  + L  KN G  NV++   G D   + N+++             R  +  ++  
Sbjct: 62  VKGGRGGVLLVAKNAGATNVMIWERGRDEPTVYNVNVT--------SGAARALLDGTSPS 113

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           V     T V+ G   T+   QRAV  ++T   + G    A++          I+G++ V 
Sbjct: 114 VNTYGGTTVIGGAAGTLDGHQRAVHAAKTVGGKDGTTLDAST----------ISGKNVVQ 163

Query: 198 LKVTIAEVRRDILKQIGFQH------------------SITGSSSGPSKSFAADFGGKFV 239
           + V + E  R +LKQ G                     SITG+  G S ++        +
Sbjct: 164 VDVRVVEFSRSVLKQAGLNFFKQSNGFAFGAFAPTGLTSITGTPGG-SLTYNTSV---PI 219

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S   +  V  V  R  F   L  LE     R LA+PTL A+SGQSA+F +GG+ +   V 
Sbjct: 220 SSAFNLVVNSV-SRGLFAD-LSILEANNLARVLAQPTLVALSGQSANFLAGGE-IPVPVP 276

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRK 355
            S G  S+    YGV L  TPTVLSP RI L++  E S+      I +N+  +P+   R+
Sbjct: 277 QSLGTISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRR 336

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ADTTVEL  G + V+ GL+  +       +P L  +PI+GA F+N  + + + E+ I  T
Sbjct: 337 ADTTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVT 396

Query: 416 PFLVKPVA 423
           P LV P+A
Sbjct: 397 PHLVAPIA 404


>gi|27378611|ref|NP_770140.1| hypothetical protein blr3500 [Bradyrhizobium japonicum USDA 110]
 gi|27351759|dbj|BAC48765.1| blr3500 [Bradyrhizobium japonicum USDA 110]
          Length = 550

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 137/512 (26%), Positives = 216/512 (42%), Gaps = 83/512 (16%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAA----------VINISDVEIGKGKKIS 51
           R   +T   +++  +     +VA   P   A AA          V  ++DV+     ++ 
Sbjct: 5   RVSGKTVARLLAFGVMGLGAAVALCGPADRAEAADRRGSSGGVFVSEMNDVQ-----RVR 59

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           + +NK    +V      ++   P   DV   S   +Y+ GK  G  NVIL     KQ+  
Sbjct: 60  VVVNKSRTFKVDTAFATIIAGSPDIVDVKSLSDHMIYVQGKQTGTTNVILFDSAMKQIGV 119

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
           LD+ +  D  +L+  +R       +RV      VVL G       ++RA+ ++ + +++ 
Sbjct: 120 LDVEVVIDTGNLQQNIRTGTGMQGVRVSASEGQVVLSGTAVDAVAAERAMAIATSTVAKG 179

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------SG 225
           G           V+N +++A   QV L+V   EV R+  + +G   S   ++      SG
Sbjct: 180 G----------TVVNAMSVAAPQQVMLEVRFLEVSREAGRNLGVNLSAANANGTNIGNSG 229

Query: 226 PSKSFAAD---FGGKFVSEG--------------GDFSVKGVLDRF-------------- 254
             +  AA     GG   + G              G   V G L                 
Sbjct: 230 LGRVTAAGRTPIGGINTANGPLGAGGGPVGSAPTGSLPVLGTLGTLAGTAGGIAPAPFGT 289

Query: 255 ------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                       S + ++ ALE     R LAEP LT +SG +A F +GG+      + +T
Sbjct: 290 LLTSLIRTSNGGSVDMLISALETKGLARRLAEPNLTTLSGDAARFLAGGEFPVPIPTQTT 349

Query: 303 GATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRK 355
                 T +Y   GV L F PTVLS G I LR++  VSE      + +    +P+   R 
Sbjct: 350 NGFPTITIEYKKFGVELAFVPTVLSRGVINLRVEPSVSELDFANAVTIQGTTVPALTRRD 409

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A TTVEL  G +  +AGLL+   +Q    +P +  +P++G LF +  + +EET++ I  T
Sbjct: 410 ARTTVELRDGQSFAIAGLLQTRNRQDVSQLPWIGSVPVIGTLFSSKSYQQEETDLVIIVT 469

Query: 416 PFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFN 446
           P LV P A  + L+ P D     +D   FF N
Sbjct: 470 PRLVAPAAPGQQLASPLDSRLPANDVD-FFLN 500


>gi|238897548|ref|YP_002923227.1| putative tight adherance operon protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465305|gb|ACQ67079.1| putative tight adherance operon protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 459

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 215/460 (46%), Gaps = 73/460 (15%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
           + QR    +  IF F + P          ANAA  N  D+ + +G+ +        +++ 
Sbjct: 6   FYQRCIKLIFFIFGFFTLPG--------SANAA--NTGDLFMSEGESL--------VIKK 47

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
             ++  V VS+P  AD  +    T+ ++ K  G++       +     +  ++++  I  
Sbjct: 48  KQNIDTVFVSNPAVADYKIVDHNTVIIYAKAEGKSEFTFFEPNQNISYHATVMVDNIIKV 107

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGM----------VRTIQDSQRA----------VE 162
           +   +R    +S +++E +  + +L GM          VR + +S ++          V 
Sbjct: 108 VSDKIRMLYPESQVQIEKIGKSYLLTGMAPTEEVRDNIVRMVGESIQSPKSNDKDTVSVR 167

Query: 163 L--------SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           L        SET  +++  +   N   ++++N + +   +QV +K++I EV ++    IG
Sbjct: 168 LDISDKGDASET--TENVNSSLTNKVYERLINQIQLPVSNQVNVKLSIVEVSKEFKDNIG 225

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
           F+ +  G+ S    +F AD                         +++AL+  +  R LAE
Sbjct: 226 FEWANLGTFSFHKFNFTAD---------------------RITHLVNALQDDSIARVLAE 264

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L+ +SG+SASF  GG+  Y     ++   S+   ++G+ L  T  V    R+ + +  
Sbjct: 265 PNLSVLSGESASFLVGGEIPYVKDRDASNRASIDFKEFGIKLSVTAKVNENKRVKVMLSE 324

Query: 335 EVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           E+S  VIG    +   MPS + R+A+TTVEL  G + VL GL+  + Q+  + +P +  I
Sbjct: 325 EISS-VIGNTKAEEFTMPSLKKRRANTTVELADGESFVLGGLMNQEEQEALQKVPFIGDI 383

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           PILG+ FR+++ N    E+ + AT  LVKP+  ++++ PD
Sbjct: 384 PILGSFFRHTKTNNRSIELIVVATVNLVKPIPSKEITLPD 423


>gi|84385684|ref|ZP_00988715.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01]
 gi|84379664|gb|EAP96516.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01]
          Length = 456

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 195/407 (47%), Gaps = 49/407 (12%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    +Q+   +  V +++P   D  + +  T+ +F   +GQ+ +I+ G DG  +L
Sbjct: 34  SITLNDGQHIQLKSPIGQVFINNPDIVDYKIINDNTIVVFANAIGQSRLIVYGIDGDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ D+  +   L+    ++ ++++ V + V + G+V +         L  T L +
Sbjct: 94  SDRIIVDLDLTDIRRQLKFHFPNAKVKIQSVGEQVAVSGLVDSEATRDDIYRLVATLLGR 153

Query: 171 SGRNQY------------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++                         N + + ++  + +A   QV +K+++A+V 
Sbjct: 154 EKTEKWDKTVKLEFKSDSSNYEEPESFVFARNMTWEGIIERIEVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               + +G   S  GSS G           +FV +          D  +  T++ AL   
Sbjct: 214 ESFGQTVGVDWSSVGSSVG-----------EFVFDQ--------FDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                LAEP LT +SG+SASF  GG+     + +++   +++  ++G+ L  T  VLS  
Sbjct: 255 QIAEVLAEPNLTVLSGESASFLVGGE--VPVIVTTSNNVNISFKEFGIKLDLTAKVLSQD 312

Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKE 383
           RI +++  EVSE    I      +P    R+A TTVEL  G + VL GL+   D++++++
Sbjct: 313 RIRMQLAPEVSEVEGYIETAGIKVPQLASRRAMTTVELADGDSFVLGGLMSSADLEKMQK 372

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            IP +  IP+LGA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 373 -IPFVGDIPVLGAAFRKATTERKRTELIIVATVNLVEPMKPKDIQLP 418


>gi|294012239|ref|YP_003545699.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
 gi|292675569|dbj|BAI97087.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
          Length = 543

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/213 (39%), Positives = 120/213 (56%), Gaps = 10/213 (4%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATS 306
           L      + L ALER   ++TLAEPTL A+SG++ASF +GG+           + +G+ S
Sbjct: 293 LGGLRISSALDALERKGLVKTLAEPTLVALSGETASFLAGGEFPIPVAQNGNGTGSGSNS 352

Query: 307 VTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPV--IGVNAGDMPSYRVRKADTTV 360
           +T     +GV L FTPTVLS G I L ++ EVS  +P   + +N   +P    R+A T V
Sbjct: 353 ITVEFKPFGVSLGFTPTVLSDGIINLVVEPEVSSIDPSASVQINGLVIPGLLTRRAKTVV 412

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL  G +  +AGLL++D Q     IP+L  +PI+GALFR+S F ++ETE+ +  TP LVK
Sbjct: 413 ELRDGQSFAIAGLLRNDFQDTIRQIPVLGSLPIIGALFRSSGFQKQETELVMIVTPRLVK 472

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           P+   D+  P D      +   F   R +K  G
Sbjct: 473 PMRADDVRLPTDRVGNPHELDLFLMGRTDKAVG 505



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 28/227 (12%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
           LP   +A  A +N+S+       ++ + LNK  +L V       LV +   ADV+  + R
Sbjct: 15  LPMQAQAQVASLNVSNAN--HAGQLDVPLNKSQVLTVDRPFAKALVGNAEIADVLPMTNR 72

Query: 86  TMYLFGKNVGQANVILIGHDGKQML--NLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
           ++Y+ GK +G  ++ L  +D + M+   +D+ +  D+  L+  L   I    I   + +D
Sbjct: 73  SVYVLGKKMGTTSLTL--YDSRNMMIAVVDVAVGPDVVTLKRQLSELIPGEQIGARISND 130

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            ++L G V +     +AV ++ T+             S+K++N+L++    QV L+V  +
Sbjct: 131 ALILTGTVSSAAAVDQAVRIASTYA----------GGSEKIVNMLSVGASQQVMLEVRFS 180

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           EV R   K++G  H+   +S            GKFV   G+  + GV
Sbjct: 181 EVNRQAAKELGLNHTFLNNS------------GKFVGGMGENGLAGV 215


>gi|296158794|ref|ZP_06841623.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
 gi|295890999|gb|EFG70788.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
          Length = 474

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 177/378 (46%), Gaps = 38/378 (10%)

Query: 66  VQDVLVSDPTKADVVV---HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           +Q V + DP+ ADV++        + L GK  G  N++L   D    L   + +    A 
Sbjct: 76  LQRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARDRDAPLQYTVDVTTPAAA 135

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
                   +      V+++  T V+ G   T++  QRAV  +E  L + G          
Sbjct: 136 ------SLLGPDTPAVKVLGGTAVVSGTSATMEAHQRAVVAAEGSLGKDG---------- 179

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-----HSITGSSSGPSK-SFAADFGG 236
            V +   +A    V + V + E  R +LK++GF      +  T  S  PS  S  +   G
Sbjct: 180 AVFDTSTVASRAVVQVDVRVVEFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVSATAG 239

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHAL-------ERATAIRTLAEPTLTAISGQSASFTS 289
           +  S  G   +    +   F +  H L       E     R LAEPTL A+SGQSASF +
Sbjct: 240 QAPSMTGVTPISSAFNLI-FNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSASFLA 298

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNA 345
           GG+ +   V  + G+TS+    YG+ L  TPTVLSP RI L++  E S+      + ++ 
Sbjct: 299 GGE-VPIPVPQALGSTSIEFKPYGIGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISG 357

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P++  R+ADTTVEL  G + V+ GL+  +       +PLL  +P++G  F+   + +
Sbjct: 358 VSVPAFITRRADTTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLNYQQ 417

Query: 406 EETEIFIAATPFLVKPVA 423
            E E+ I  TP LV P+A
Sbjct: 418 NEKELVIIVTPHLVSPLA 435


>gi|37676253|ref|NP_936649.1| rough colony protein RcpA [Vibrio vulnificus YJ016]
 gi|326424174|ref|NP_762071.2| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus
           CMCP6]
 gi|37200794|dbj|BAC96619.1| rough colony protein RcpA [Vibrio vulnificus YJ016]
 gi|319999557|gb|AAO07061.2| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus CMCP6]
          Length = 441

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 189/386 (48%), Gaps = 41/386 (10%)

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           +  V V  P  AD  +     + ++G  +G  +VI+    G ++ N ++++ + +  ++ 
Sbjct: 42  ISTVFVGAPEIADYKIIDETKVVVYGVGLGATSVIVYDRAGNELYNAEVVVNKSLRLVKQ 101

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMV----------RTIQD------SQRAVELSETFLS 169
           TL     D +I +  V + VVL G+V          RT+ +      ++  + L +T   
Sbjct: 102 TLIARFPDESINITNVGEQVVLDGVVSSEEVKTQIYRTVGEMLKKSVTRNTLTLQDTSGG 161

Query: 170 QSGRNQY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
           Q     Y A      ++N L +   +Q+ +K+T+AEV    L ++G  +S +G +     
Sbjct: 162 QVDSLDYTATYIYDNIINNLKVLTTEQINVKLTVAEVSSSFLSELGVSYSDSGQA----- 216

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                  G+FV++  DF+ + ++       V+ A       R LAEP L+ ISG++ASF 
Sbjct: 217 -------GRFVNKLLDFTAQDIV------AVITASGDDQIGRVLAEPNLSVISGETASFL 263

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVN 344
            GG+ L   +   +G  SV+  +YGV L     V     I L +  EVS    E      
Sbjct: 264 VGGE-LPIAIRDESG-ISVSYKEYGVKLSMVAKVTDSENIRLSLLPEVSSIDEENKTANG 321

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
             ++P+ R RKA TTV+L  G + VLAGLL  + ++    IP+L  IPILGALF +++ N
Sbjct: 322 LINVPALRTRKAQTTVQLKDGQSFVLAGLLTSEERESLSKIPVLGDIPILGALFSHTKSN 381

Query: 405 REETEIFIAATPFLVKPVAMRDLSRP 430
           + +TE+ I AT  LV PV   D+  P
Sbjct: 382 QTKTELIIVATVNLVDPVKAEDIKLP 407


>gi|134295595|ref|YP_001119330.1| type II and III secretion system protein [Burkholderia
           vietnamiensis G4]
 gi|134138752|gb|ABO54495.1| type II and III secretion system protein [Burkholderia
           vietnamiensis G4]
          Length = 443

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 179/385 (46%), Gaps = 50/385 (12%)

Query: 66  VQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVILI--GHDGKQMLNLDILIERDI 120
           +Q V V DP  ADV++       ++ L  K  G  NV++   GHD   + N++++     
Sbjct: 43  LQRVAVGDPAIADVLIMKGSRAGSVLLTAKAPGTTNVMVWERGHDEPTVWNVEVVDAAAQ 102

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           A L+         S  +V+    T VL G   ++   +RAV +++             S 
Sbjct: 103 AVLDA--------STPQVKAYGGTSVLRGTAGSLDAHERAVAVAKNM-----------SP 143

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAAD 233
              V++   +AG++ V + V + E  R +LKQ+GF         S    S G  +S+   
Sbjct: 144 KGAVIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQSNGFSFGSFSPGGVQSYN-- 201

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHA-----------LERATAIRTLAEPTLTAISG 282
            GG            G     +F  V++A           LE     R LAEPTL A+SG
Sbjct: 202 -GGSGPGTAAYIPTLGAPVASAFNLVVNAAGHGIFADLSLLEANNLARVLAEPTLVALSG 260

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
           QSASF +GG+    +     G+T++    YGV L  TPTVLSP RI L++  E S+    
Sbjct: 261 QSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLSPNRIALKVAPESSQLDFV 319

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             + ++   +P    R+ADTTVEL  G + V+ GL+          +PLL  +PI+G  F
Sbjct: 320 NSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFF 379

Query: 399 RNSRFNREETEIFIAATPFLVKPVA 423
           +N  + + + E+ I  TP LV P+A
Sbjct: 380 KNLNYQQNDKELLIIVTPHLVAPIA 404


>gi|327541686|gb|EGF28210.1| bacterial type II/III secretion system protein [Rhodopirellula
           baltica WH47]
          Length = 454

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 160/332 (48%), Gaps = 33/332 (9%)

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           +++RV  + ++ ++ G V ++ D  +AV ++E F +              V+N + + G 
Sbjct: 8   ASLRVTPIGESAIISGYVTSVDDVDKAVAITEQFYT-------------TVINNIQVVGI 54

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGGDFSVKG 249
            QV L   I EV R  L+++G   +I   +    +GPS     D G   V     F    
Sbjct: 55  QQVLLHTKIMEVSRTKLRELGVDLAILDDNFTLLNGPSGVL--DVGAGIVEGDAGFGPIP 112

Query: 250 VLD---RFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           + D   RF+    FET+++AL      + LAEPT+ A  G+ A FT GG+ +   V    
Sbjct: 113 LGDTNLRFNVNGNFETLINALHEQRLTKLLAEPTVVATHGRPARFTVGGR-IPTIVPGQN 171

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADT 358
           G   +T  DYG  + F P V+ PGRI L ++ EVSEP     + VN  ++ ++  R  +T
Sbjct: 172 GQVQITYEDYGTSIDFLPFVVGPGRIRLEVRPEVSEPDPSRAVTVNGTNVTAFTTRYVET 231

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +G T  LAGLL+   +      P    +P +G LFR  +  R E E+ I  TP L
Sbjct: 232 AVEMQAGQTFALAGLLQSRTESTTSRTPFFGSLPYVGTLFRKMQERRNEIELLILVTPEL 291

Query: 419 VKPVAMRDLSR--PDDHYSVEDDAKAFFFNRV 448
           V+ +   ++ R  P  +    DD + + +  +
Sbjct: 292 VEAMDPHEVPRGGPGMNSHSPDDKEFYLYGHI 323


>gi|283779855|ref|YP_003370610.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283438308|gb|ADB16750.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 585

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 179/382 (46%), Gaps = 30/382 (7%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G  +K+ + +N   +++ P DV  +LV++P    +   SP ++ L     G   + +   
Sbjct: 56  GPAEKLEMTVNTSRVVEFPFDVPKMLVNNPDLVRITPISPNSIQLSAVKGGVTQLNVWNA 115

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           D  Q+  LD+++  D+  LEM L+    D+ IR+  ++ ++ + G V   +       ++
Sbjct: 116 D-DQVTTLDLIVIPDVQELEMILKHEFPDAAIRLRPLASSLYISGFVPKAEMVASITRVA 174

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------ 218
           E +               K++N + + G  +V L V + EV R  L+ +GF  +      
Sbjct: 175 EDYF-------------PKIINNMTVGGVQKVLLHVKVMEVSRTKLRTMGFDWAQLNGDD 221

Query: 219 -ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-DRFSFETVLHALERATAIRTLAEPT 276
            +T S SG  ++      G      G     G+L D   F   L AL +    + LAEPT
Sbjct: 222 FVTQSVSGLLQT-----PGTLTGNTGATVRFGILTDNNQFYGFLEALRQNDLAKLLAEPT 276

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L  +SG+ A F  GG+ +   +  S G T+V    +G  + F P VL  G I L ++ EV
Sbjct: 277 LVTMSGRPAYFNVGGE-VPIPMQQSLGVTTVQYKQFGTRIDFVPIVLGNGSIRLEVRPEV 335

Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +E  P +      +P +R R ADT VE+ +G T+ +AGL+ + ++    G+P L+ +P  
Sbjct: 336 TEIDPSLRDAVTGVPGFRQRGADTAVEIKAGQTMAIAGLVYNRVEASNRGVPFLADLPWA 395

Query: 395 GALFRNSRFNREETEIFIAATP 416
           G  FR       E E+ I  TP
Sbjct: 396 GGAFRRVSEKVNEVELVIMVTP 417


>gi|172060495|ref|YP_001808147.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
 gi|171993012|gb|ACB63931.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
          Length = 461

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 179/385 (46%), Gaps = 50/385 (12%)

Query: 66  VQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQANVILI--GHDGKQMLNLDILIERDI 120
           +Q V V DPT ADV++       ++ L  K  G  NV+L   GHD   + +++++     
Sbjct: 61  LQRVAVGDPTIADVLIMKGSRSGSVLLTAKAPGATNVMLWERGHDEPTVWSIEVVDAAAH 120

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           A L+ ++ +        V+    T VL G   T+   +RA  +++             S 
Sbjct: 121 AVLDGSMPQ--------VKAYGGTSVLRGTSATLDAHERAATVAKNM-----------SP 161

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAAD 233
              V++   +AG+  V + V + E  R +LKQ+GF         S    S G  +S+   
Sbjct: 162 KGTVIDRSTLAGKSVVQVDVRVVEFSRSVLKQVGFNFFKQSNGFSFGSFSPGGVQSYN-- 219

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHA-----------LERATAIRTLAEPTLTAISG 282
            GG      G     G     +F  V++A           LE     R LAEPTL A+SG
Sbjct: 220 -GGSGPGTAGYIPALGAPVASAFNLVVNAAGRGIFADLSLLEANNMARVLAEPTLVALSG 278

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
           QSASF +GG+    +     G+T++    YGV L  TPTVL P RI L++  E S+    
Sbjct: 279 QSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLGPNRIALKVAPESSQLDFV 337

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             + ++   +P    R+ADTTVEL  G + V+ GL+          +PLL  +PI+G  F
Sbjct: 338 NSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFF 397

Query: 399 RNSRFNREETEIFIAATPFLVKPVA 423
           +N  + + + E+ I  TP LV P+A
Sbjct: 398 KNLNYQQNDKELLIIVTPHLVAPIA 422


>gi|170724970|ref|YP_001758996.1| type II and III secretion system protein [Shewanella woodyi ATCC
           51908]
 gi|169810317|gb|ACA84901.1| type II and III secretion system protein [Shewanella woodyi ATCC
           51908]
          Length = 446

 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 194/402 (48%), Gaps = 44/402 (10%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           + LN    +++  ++  V +S P  AD  +     + ++G+ +GQA + +     + +L+
Sbjct: 29  VTLNDASSIELKQEIGTVFISQPEVADYKITGNNKLVIYGRQLGQARLFVYNKANEVILS 88

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ---------------- 155
             + ++ +++ +   L+ F  D ++ +  V D V + G+V + +                
Sbjct: 89  QLLHVDINLSQIRRQLKLFYPDLDLTLTSVGDKVAVRGIVYSEEQRNDIYRQVATFLGRE 148

Query: 156 -----DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
                D    VE  ++F   +      N   + ++  L ++   QV +K+++A+V ++  
Sbjct: 149 KVERFDESELVEFKDSFTEANWLAYERNFIWQGIIEGLRLSQTQQVNVKISVAQVTKEFN 208

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
           + +G   S  G S G   SF  DF      +  D S           T+++AL + +   
Sbjct: 209 ETLGVSWSTVGRSVGEF-SFL-DF------KASDLS-----------TIINALGKDSIAE 249

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP L+ +SG+SASF  GG+     + S+   T++T  ++G+ L  +  VL+  +I L
Sbjct: 250 VLAEPNLSVMSGESASFLVGGE--IPVIFSNNNTTNITYKEFGIRLDLSAKVLNNEKIKL 307

Query: 331 RIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           ++  EVS  E  +      +P    R+A TT+EL  G + +L GL+  D  +    IPLL
Sbjct: 308 QMMPEVSAVEGFVEAAGIKIPQLTTRRAMTTIELGDGDSFLLGGLMSSDELENVSKIPLL 367

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
             IP+ GALFR +   R++TE+ I AT  LVKP++  ++  P
Sbjct: 368 GDIPVFGALFRQAGTTRKKTELVIVATVNLVKPLSPTEVRLP 409


>gi|91783011|ref|YP_558217.1| putative outer membrane channel signal peptide protein, CpaC like
           [Burkholderia xenovorans LB400]
 gi|91686965|gb|ABE30165.1| Putative outer membrane channel signal peptide protein, CpaC like
           protein [Burkholderia xenovorans LB400]
          Length = 454

 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 176/378 (46%), Gaps = 38/378 (10%)

Query: 66  VQDVLVSDPTKADVVV---HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           +Q + + DP+ ADV++        + L GK  G  N++L   D    L   + +    A 
Sbjct: 56  LQRIAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARDRDAPLQYTVDVTTPAAA 115

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
                   +      V+++  T V+ G   T++  QRAV  +E  L + G          
Sbjct: 116 ------SLLGPDTPAVKVLGGTAVVSGTSATMEAHQRAVVAAEGSLGKDG---------- 159

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-----HSITGSSSGPSK-SFAADFGG 236
            V +   +A    V + V + E  R +LK++GF      +  T  S  PS  S  +   G
Sbjct: 160 AVFDTSTVASRAVVQVDVRVVEFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVSATAG 219

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHAL-------ERATAIRTLAEPTLTAISGQSASFTS 289
           +  S  G   +    +   F +  H L       E     R LAEPTL A+SGQSASF +
Sbjct: 220 QAPSMTGVTPISSAFNLI-FNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSASFLA 278

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNA 345
           GG+ +   V  + G TS+    YG+ L  TPTVLSP RI L++  E S+      + ++ 
Sbjct: 279 GGE-VPIPVPQALGTTSIEFKPYGIGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISG 337

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P++  R+ADTTVEL  G + V+ GL+  +       +PLL  +P++G  F+   + +
Sbjct: 338 VSVPAFITRRADTTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLNYQQ 397

Query: 406 EETEIFIAATPFLVKPVA 423
            E E+ I  TP LV P+A
Sbjct: 398 NEKELVIIVTPHLVSPLA 415


>gi|330882201|gb|EGH16350.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 216

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 115/192 (59%), Gaps = 5/192 (2%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           + + +L AL+    +  LAEP +TA++GQ+ASF +GG+ +   V  +     +    YGV
Sbjct: 13  NIDAMLEALQSNGVLEVLAEPNITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGV 71

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            L F+PT+L  GRI L+++ EVS       + VN   +PS+RVR+ADT VE+ SG T  +
Sbjct: 72  SLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAI 131

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGL + +  Q  + +P+L  +PILG LFR+ RF R ETE+ I  TP+LV+PV  R ++ P
Sbjct: 132 AGLFQHESSQDMDKVPMLGDMPILGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATP 191

Query: 431 DDHYSVEDDAKA 442
            D       A A
Sbjct: 192 LDKQRAASTASA 203


>gi|218676249|ref|YP_002395068.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
 gi|218324517|emb|CAV25991.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
          Length = 446

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 186/388 (47%), Gaps = 45/388 (11%)

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           +  V V++   AD  +     + ++G   G  +VI+    G ++ N ++++ + +  L+ 
Sbjct: 47  ISTVFVANQEVADYKIIDENKVVVYGVGQGATSVIVYDRGGNEIYNAELVVNQSLRLLKQ 106

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----------- 174
           TL     D N+ V  V D VVL G+V + +  Q+   L    L +  R            
Sbjct: 107 TLIARFPDENVVVSNVGDQVVLDGIVGSEEIKQKINRLVGEMLKKDRRRAAYELKDADGE 166

Query: 175 -----QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
                +Y A  +  +V+N L +   +Q+ +K+T+AEV    L ++G  +S +G       
Sbjct: 167 ALDELEYTAKYNYDQVINNLKVLTTEQINVKLTVAEVSSSFLTELGVTYSDSGQP----- 221

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                  G FV++  DF+ + ++      +V+ A       R LAEP L+ ISG+ ASF 
Sbjct: 222 -------GTFVNKLLDFTAQDIV------SVISASGDDKIGRVLAEPNLSVISGEQASFL 268

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342
           +GG+ +   V    G T ++  +YGV L     V     I L +  EVS      +   G
Sbjct: 269 AGGE-IPIAVRDQDGIT-ISYKEYGVKLAMVAKVTDTENIRLTLIPEVSSIDESNKTTTG 326

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           + +  +PS R R+A TTV L  G + VLAGLL  + ++    IP+L  IPILGALF +S 
Sbjct: 327 LIS--VPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTKIPILGDIPILGALFSHSS 384

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430
            NR +TE+ I AT  LV PV    +  P
Sbjct: 385 TNRSKTELIIVATVNLVDPVEQEQVKLP 412


>gi|145299828|ref|YP_001142669.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852600|gb|ABO90921.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 461

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 195/444 (43%), Gaps = 52/444 (11%)

Query: 66  VQDVLVSDPTKADVVVHSP--RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           V+D  V++     V VHSP  + + ++G+ VG+ ++++   DG+ + +  + +  D+A L
Sbjct: 34  VRDAFVAN--SELVRVHSPSDQQLLIYGRKVGRTDLVVTAQDGRTLGHYRVQVVADLAPL 91

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS-------------- 169
           +   R+    S +        +V+ G V +   +   + + E F                
Sbjct: 92  KQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILAMVEAFAKGIQPQGVPSGPVAP 151

Query: 170 ---QSGRN------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
              QSG              QYAN     V+N L +AG DQ+ + V I E++R   +Q+G
Sbjct: 152 AQPQSGNQDEGAAVAGGGSGQYAN-----VINQLRLAGSDQINISVRIVEMQRTTSEQLG 206

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            + S  G             G +F       S  G  D      ++ AL   + +  LAE
Sbjct: 207 LRWSAMGE----YLQLGVSPGNRFPKPAERGSWGGKKDVVYINAIIDALVENSLVNVLAE 262

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P LTA SG++A+F SGG+  +   +   G   +    +G+ L  TPT+L   RI L +  
Sbjct: 263 PNLTAKSGEAATFMSGGEFPFPVGNGDNGP-EIEFKKFGISLELTPTLLDNNRISLTVSP 321

Query: 335 EVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVS    E  + +    +P    R+  TT+EL  G +  LAGL++    Q  E +P L +
Sbjct: 322 EVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTHRNQSSEALPFLGE 381

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVN 449
           IP L   F ++ F  +E+E+ I AT  LV+P +    LS P DHY      +  FF  + 
Sbjct: 382 IPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRAPSRFERRFFTDM- 440

Query: 450 KIYGPKEASEVEGQNYKGAIGFIY 473
              G  E    +     G  G+ Y
Sbjct: 441 ---GSTERPGAQATRLFGNYGYSY 461


>gi|88866586|gb|ABD57354.1| FlpC [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 479

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 195/444 (43%), Gaps = 52/444 (11%)

Query: 66  VQDVLVSDPTKADVVVHSP--RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           V+D  V++     V VHSP  + + ++G+ VG+ ++++   DG+ + +  + +  D+A L
Sbjct: 52  VRDAFVAN--SELVRVHSPSDQQLLIYGRKVGRTDLVVTAQDGRTLGHYRVQVVADLAPL 109

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS-------------- 169
           +   R+    S +        +V+ G V +   +   + + E F                
Sbjct: 110 KQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILAMVEAFAKGIQPQGVPSGPVAP 169

Query: 170 ---QSGRN------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
              QSG              QYAN     V+N L +AG DQ+ + V I E++R   +Q+G
Sbjct: 170 AQPQSGNQDEGAAVAGGGSGQYAN-----VINQLRLAGSDQINISVRIVEMQRTTSEQLG 224

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            + S  G             G +F       S  G  D      ++ AL   + +  LAE
Sbjct: 225 LRWSAMGE----YLQLGVSPGNRFPKPAERGSWGGKKDVVYINAIIDALVENSLVNVLAE 280

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P LTA SG++A+F SGG+  +   +   G   +    +G+ L  TPT+L   RI L +  
Sbjct: 281 PNLTAKSGEAATFMSGGEFPFPVGNGDNGP-EIEFKKFGISLELTPTLLDNNRISLTVSP 339

Query: 335 EVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVS    E  + +    +P    R+  TT+EL  G +  LAGL++    Q  E +P L +
Sbjct: 340 EVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTHRNQSSEALPFLGE 399

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVN 449
           IP L   F ++ F  +E+E+ I AT  LV+P +    LS P DHY      +  FF  + 
Sbjct: 400 IPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRAPSRFERRFFTDM- 458

Query: 450 KIYGPKEASEVEGQNYKGAIGFIY 473
              G  E    +     G  G+ Y
Sbjct: 459 ---GSTERPGAQATRLFGNYGYSY 479


>gi|86144318|ref|ZP_01062650.1| Flp pilus assembly protein [Vibrio sp. MED222]
 gi|85837217|gb|EAQ55329.1| Flp pilus assembly protein [Vibrio sp. MED222]
          Length = 441

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 45/388 (11%)

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           +  V V++   AD  +     + ++G   G  +VI+    G ++ N ++++ + +  L+ 
Sbjct: 42  ISTVFVANQEIADYKIIDENKVVVYGVGQGTTSVIVYDRGGNEIYNAELVVNQSLRLLKQ 101

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----------- 174
           TL     D N+ V  V D VVL G+V + +  Q+   L    L +  R            
Sbjct: 102 TLIARFPDENVVVSNVGDQVVLDGIVGSEEIKQKINRLVGEMLKKDRRRAAYELKDADGE 161

Query: 175 -----QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
                +Y A  +  +V+N L +   +Q+ +K+T+AEV    L ++G  +S +G       
Sbjct: 162 ALDELEYTAKYNYDQVINNLKVLTTEQINVKLTVAEVSSSFLTELGVTYSDSGDP----- 216

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                  G FV++  DF+ + ++      +V+ A       R LAEP L+ ISG+ ASF 
Sbjct: 217 -------GTFVNKLLDFTAQDIV------SVISASGDDKIGRVLAEPNLSVISGEQASFL 263

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342
           +GG+ +   +    G T ++  +YGV L     V     I L +  EVS      +   G
Sbjct: 264 AGGE-IPIAIRDEDGIT-ISYKEYGVKLAMVAKVTDTENIRLTLIPEVSSIDESNKTTTG 321

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           + +  +PS R R+A TTV L  G + VLAGLL  + ++    IP+L  IPILGALF +S 
Sbjct: 322 LIS--VPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTKIPILGDIPILGALFSHSS 379

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430
            NR +TE+ I AT  LV PV    +  P
Sbjct: 380 TNRSKTELIIVATVNLVDPVEQEQVKLP 407


>gi|238790280|ref|ZP_04634054.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii
           ATCC 33641]
 gi|238721630|gb|EEQ13296.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii
           ATCC 33641]
          Length = 463

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 190/401 (47%), Gaps = 50/401 (12%)

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ-MLNLDILIER 118
           L+V   V  V +S+P  AD  V   + + +F +  G+A++ + G D    ++ + I+++ 
Sbjct: 48  LKVNAAVDTVFISNPDVADYEVIDEKQVVIFARENGRASLEIYGGDNNATLMTMSIIVDP 107

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL------------SET 166
            + +++  +      S+I ++   +  VL G V   +D++  + +            +E 
Sbjct: 108 LLGNIKKEMAEEYPGSDIDIKKYGEGYVLTGTVPD-EDAREGIYMTVGQALGLKRKETEL 166

Query: 167 FLSQSGRNQYANSSSKK-------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            +     N      S               ++N L +   +QV +K+T+ EV +  +  +
Sbjct: 167 KIKPGSVNSIGGDDSNDTPIDFMQKVVFEGLVNRLKLPTTNQVNVKLTVVEVTKTFMDNV 226

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV-KGVLDRFSFETVLHALERATAIRTL 272
           G   S  G  +                  G F++ K   D  S  ++++A++  +  R L
Sbjct: 227 GVDWSNAGLGA------------------GQFNLTKFRFDANSLNSLIYAIKNDSIARIL 268

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           AEP L+ +SG++A F  GG+     V++S   +++T  ++GV L     V S  +I L +
Sbjct: 269 AEPNLSVLSGETADFLVGGE--IPIVTTSMAGSTITYKEFGVKLVIAAKVESNNKIKLNL 326

Query: 333 QTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
             E+S        GD+  P  R RKA TTVEL  G + VL GLL ++ ++   GIP +S 
Sbjct: 327 SEEISSLDGQYALGDLNIPKLRSRKARTTVELGDGDSFVLGGLLNENEKESLSGIPFISD 386

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           IPILGALFR +   RE TE+ + AT  LVKP++   +  P+
Sbjct: 387 IPILGALFRRTGAERERTELVVVATVNLVKPISFNKVVLPN 427


>gi|325518465|gb|EGC98164.1| pilus assembly protein [Burkholderia sp. TJI49]
          Length = 429

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 189/423 (44%), Gaps = 86/423 (20%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQA 97
           ++ +G  ++IS G +          +Q V V DP  ADV++       ++ L  K  G  
Sbjct: 14  ELAVGTQRQISAGRS----------LQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGAT 63

Query: 98  NVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           NV+L   G D   + +++++     A L+        DS  RV     T VL G   ++ 
Sbjct: 64  NVMLWERGRDEPTVWSVEVVDAAAHAVLD--------DSTPRVNAYGGTAVLRGTSASLD 115

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
             +RAV +        G+N     +   V++   +AG++ V + V + E  R +LKQ+GF
Sbjct: 116 AHERAVAV--------GKNMAGKGA---VIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGF 164

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--------------------S 255
                         F    G  F    G FS  GV                        +
Sbjct: 165 NF------------FKQSNGFSF----GSFSPGGVQSYGGGSGPGTAGYIPTLGSPVASA 208

Query: 256 FETVLHA-----------LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F  V++A           LE     R LAEPTL A+SGQSASF +GG+  + +     G+
Sbjct: 209 FNLVVNAAGHGIFGDLSLLEANNLARVLAEPTLVALSGQSASFLAGGEIPFPS-PQGLGS 267

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360
           T++    YG+ L  TPTVLSP RI L++  E S+      + ++   +P    R+ADTTV
Sbjct: 268 TAIQWKQYGIGLSLTPTVLSPQRIALKVAPESSQLDYVNSVTISGVSVPGITTRRADTTV 327

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL  G + V+ GL+          +PLL  +PI+G  F+N  + + + E+ I  TP LV 
Sbjct: 328 ELGDGESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVA 387

Query: 421 PVA 423
           P+A
Sbjct: 388 PIA 390


>gi|330830432|ref|YP_004393384.1| protein transporter, outer membrane secretin (secretin) family
           [Aeromonas veronii B565]
 gi|328805568|gb|AEB50767.1| Protein transporter, outer bacterial membrane secretin (Secretin)
           family [Aeromonas veronii B565]
          Length = 465

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 182/412 (44%), Gaps = 46/412 (11%)

Query: 79  VVVHSP--RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           V VHSP  + + ++G+ VG  ++++   DG+ + +  + +  D+A LE   R+    S +
Sbjct: 49  VRVHSPSDQQLLIYGRKVGHTDLVVTALDGRTLGHYRVTVVADLAPLEQLARQHFPQSRL 108

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS-----------------QSGRN----- 174
                   +V+ G V +   +   + + E F                   Q+G       
Sbjct: 109 TFSESGGAIVVAGEVTSPLQAHEILSMVEGFAKGLQPQSVAQSTVMAPSPQAGNQDEGAA 168

Query: 175 -------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                  QYAN     V+N L +AG DQ+ + V I E++R   +Q+G + S  G      
Sbjct: 169 VAGGGSGQYAN-----VINQLRLAGSDQINISVRIVEMQRTTSEQLGLRWSAMGE----Y 219

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                  G +F       S  G  D      ++ AL   + +  LAEP LTA SG++A+F
Sbjct: 220 LQLGVSPGNRFPKPLERGSWTGKKDVVYINAIIDALVENSLVNVLAEPNLTAKSGEAATF 279

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGV 343
            SGG+  +   +   G   +    +G+ L  TPT+L   RI L +  EVS    E  + +
Sbjct: 280 MSGGEFPFPVGNGDNGP-EIEFKKFGISLELTPTLLDNNRISLTVSPEVSTLSRENSVTI 338

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +P    R+  TT+EL  G +  LAGL++    Q  E +P L +IP L   F ++ F
Sbjct: 339 AGVVVPGIETRRTTTTIELADGQSFALAGLVRSHRNQNNEALPFLGEIPGLAPFFGSNSF 398

Query: 404 NREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
             +E+E+ I AT  LV+P +    LS P DHY      +  FF  +     P
Sbjct: 399 KNQESELVIIATARLVQPTSDPLSLSTPLDHYRAPSRFERLFFTDMGSTQSP 450


>gi|148974885|ref|ZP_01811865.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3]
 gi|145965394|gb|EDK30643.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3]
          Length = 441

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 186/388 (47%), Gaps = 45/388 (11%)

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           +  V V++   AD  +     + ++G   G  +VI+    G ++ N ++++ + +  L+ 
Sbjct: 42  ISTVFVANQEIADYKIIDENKVVVYGVGQGTTSVIVYDRGGNEIYNAELVVNQSLRLLKQ 101

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----------- 174
           TL     D N+ V  + D VVL G+V + +  Q+   L    L++  R            
Sbjct: 102 TLIARFPDENVVVSNIGDQVVLDGIVGSEEIKQKINRLVGEMLNKERRRAAYELKDADGE 161

Query: 175 -----QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
                +Y A  +  +V+N L +   +Q+ +K+T+AEV    L ++G  +S +G       
Sbjct: 162 ALDEIEYTAQYNYDQVINNLKVLTTEQINVKLTVAEVSSSFLTELGVTYSDSGEP----- 216

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                  G FV++  DF+ + ++       V+ A       R LAEP L+ ISG+ ASF 
Sbjct: 217 -------GTFVNKLLDFTAQDIV------AVISASGDDKIGRVLAEPNLSVISGEQASFL 263

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342
           +GG+ +   V    G T ++  +YGV L     V     I L +  EVS      +   G
Sbjct: 264 AGGE-IPIAVRDEDGIT-ISYKEYGVKLAMVAKVTDTENIRLTLIPEVSSIDESNKTTTG 321

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           + +  +PS R R+A TTV L  G + VLAGLL  + ++    IP+L  IPILGALF ++ 
Sbjct: 322 LIS--VPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTKIPILGDIPILGALFSHTS 379

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430
            NR +TE+ I AT  LV PV    +  P
Sbjct: 380 TNRSKTELIIVATVNLVDPVEQEQVKLP 407


>gi|261251281|ref|ZP_05943855.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
 gi|260938154|gb|EEX94142.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
          Length = 441

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 184/383 (48%), Gaps = 41/383 (10%)

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           V V++   AD  +     + ++G   G  +VI+    G ++ N ++++ + +  L+ T+ 
Sbjct: 45  VFVANQQIADYKIIDDNKVVVYGVGQGSTSVIVYDRGGNEIYNAELVVNQSLRLLKQTII 104

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQY----------- 176
               D N+ V  V D VVL G+V + +  Q+   L  E    +  R+ Y           
Sbjct: 105 ARFPDENVVVSNVGDQVVLDGIVSSEEVKQKVYRLVGEMLKKERRRHTYELRDADGEEYD 164

Query: 177 -----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                +  +  +V+N L +   +Q+ +K+T+AEV    L ++G  +S +G          
Sbjct: 165 ELDYTSRFTYDQVINHLKVLTTEQINVKLTVAEVSSSFLSELGVSYSDSGEP-------- 216

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
               GKFV++  DF+ + ++      +V+ A       + LAEP L+ ISG+ ASF +GG
Sbjct: 217 ----GKFVNKLLDFTAQDIV------SVISASGDDKIGQVLAEPNLSVISGEQASFLAGG 266

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG--D 347
           + +   V    G  S++  +YGV L     V     I L +  EVS  +     + G   
Sbjct: 267 E-IPIAVRDEDG-ISISYKEYGVKLAMVAKVTDSENIRLTLIPEVSSIDESNKTSTGLIS 324

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P+ R R+A TTV L  G + VLAGLL  + ++    IP L  IPILGALF ++  NR +
Sbjct: 325 VPTLRTRRAQTTVHLKDGQSFVLAGLLTSEEREALTKIPFLGDIPILGALFSHTTTNRSK 384

Query: 408 TEIFIAATPFLVKPVAMRDLSRP 430
           TE+ I AT  LV PV    +  P
Sbjct: 385 TELIIVATVNLVDPVESEQVKLP 407


>gi|262275469|ref|ZP_06053279.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Grimontia hollisae CIP 101886]
 gi|262220714|gb|EEY72029.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Grimontia hollisae CIP 101886]
          Length = 454

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 197/419 (47%), Gaps = 52/419 (12%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A VIN+     G G   S+  N VI          V +SDP  AD  V     + +FG+ 
Sbjct: 29  AGVINL-----GTGDARSLEFNAVI--------GTVFISDPDIADYQVIDSNKLVVFGRK 75

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
           +G   +I+   D + + +  I++ + +  +E  L     D ++ V  + + VVL G+V T
Sbjct: 76  LGTTTLIVFDEDSQTLSHRKIVVNQSLTKIEQILAIRYPDVDVSVLNMGEQVVLTGVVPT 135

Query: 154 IQDSQRAVELSETFLSQ---SGRNQYANSSSKK-------------VMNLLNIAGEDQVT 197
            ++      +    LS+     R Q+  S  ++             ++N L +    QV 
Sbjct: 136 QKEKNEIYAVVGELLSKKFVERRTQWKTSFDEEFDIDFMARRTYEGLVNNLEVTVTKQVN 195

Query: 198 LKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAA--DFGGKFVSEGGDFSVKGVLDR 253
           +K+TIAEV   ++ ++G +    +    +G  + F     FGG+  +             
Sbjct: 196 VKLTIAEVNSSLINELGIKWGTILEDGFAGNGQFFKGITGFGGRTTN------------- 242

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 + A+      + L+EP ++ ISG++ASF  GG+ +  T     G   +   ++G
Sbjct: 243 --VAAYISAINDDNVGQVLSEPNVSVISGETASFLVGGE-IPITYRIDDGY-RIEYKEFG 298

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           + L     VL   +I L +  +VS  +   G    D+PS++VR+A TT+EL  G + VLA
Sbjct: 299 IGLDLAAEVLRDDKIKLSVMPQVSSVDNQYGDTLLDIPSFKVRRARTTLELGDGDSFVLA 358

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           GLL  + ++    IP +  +PILGALFRN+   R +TE+ I AT  LV+PV+  +++ P
Sbjct: 359 GLLSSEDEEALSKIPFIGDVPILGALFRNTSTTRRKTELVIVATVSLVEPVSSANITIP 417


>gi|328952514|ref|YP_004369848.1| type II and III secretion system protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452838|gb|AEB08667.1| type II and III secretion system protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 536

 Score =  136 bits (342), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 129/508 (25%), Positives = 221/508 (43%), Gaps = 65/508 (12%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
           YL R    ++  FL +S  +V     + E      N SD    K  +I I  +   + + 
Sbjct: 53  YLSRWLSIVLLFFLLTSGRAV-----LAE------NESDFA-SKAGRIVIAPHMSFVKRT 100

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD--- 119
              +  V++++P+ AD  + +P  +++ GK       + + H        +I++  D   
Sbjct: 101 QRPITRVVLANPSLADAELLTPTQLFIVGKVKQGVTSLTLWHGDNYAETYEIVVSFDDKV 160

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
              ++  +RR +  + ++VE + + V+L G V +  D  +  ++++ F  +         
Sbjct: 161 WNDVQAAIRRLVPRARVKVERLPEGVMLDGAVESQGDLDKVDKIAKFFFGE--------- 211

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---SSGPSKSFAADFGG 236
                 N++ + G  QV L+V +AEV R  +KQ+G    +      +  PS + A    G
Sbjct: 212 ----CTNMITVMGSQQVQLEVKVAEVSRSGIKQLGLGFLLDKDYKVAVFPSGTAAGAMAG 267

Query: 237 ------KFVSEGGD------FSVKGVLDRFS--FETVLHA-----------LERATAIRT 271
                 ++ +   D       SV  +   +S  F+ ++H            L+     R 
Sbjct: 268 DRTTVSQWPTGSSDTKTSSLASVAALASPYSSAFQALVHGLNDDILGIVSLLQGQGLTRL 327

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LA PTL  +SGQ A F  GG+  Y+TV  STG        +GV+L FTP VL    I + 
Sbjct: 328 LASPTLVTMSGQEAHFLVGGEIPYQTV-GSTGTPGTDFKKFGVMLKFTPYVLGDETITIS 386

Query: 332 IQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           +  EVS P         +   +P    R   +T++L  G    +AGLL+DD +   + IP
Sbjct: 387 VDPEVSAPDYTLGTTTSSGTTVPGLITRTGHSTLQLKDGQVFAMAGLLRDDFRSTVKKIP 446

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL-SRPDDHYSVE-DDAKAFF 444
            L  +PILG LF +  F R ETE+ I   P +V+ +  +++ + P  +   +  D   F 
Sbjct: 447 FLGNLPILGTLFTSKEFQRSETELMIIVKPKIVRALNPQEVPALPGSNMERDVSDLDFFI 506

Query: 445 FNRVNKIYGPKEA-SEVEGQNYKGAIGF 471
            NR     G   A    +  ++ G IGF
Sbjct: 507 LNRGWPKTGASSAPPPAKAPSFVGEIGF 534


>gi|238759122|ref|ZP_04620291.1| Type II/III secretion system protein [Yersinia aldovae ATCC 35236]
 gi|238702670|gb|EEP95218.1| Type II/III secretion system protein [Yersinia aldovae ATCC 35236]
          Length = 354

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 185/374 (49%), Gaps = 44/374 (11%)

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           +   + + M+   +L+   I  +   ++    DSNI +  + D+ +L G      +S+ A
Sbjct: 1   MFNRNNQPMIKTVVLVNNIINLVYQRIKVEYPDSNIEINKIGDSYILTGQA----ESEEA 56

Query: 161 VELSETFLSQSGRN--------QYANSSSK-KVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            +   + + ++  N        QY N+ +   ++N + +   +QV +K+TIAEV +D  +
Sbjct: 57  KDTIASMVGEAVNNRREIKHKDQYLNNHNYLGIINKIKLPRPNQVNVKLTIAEVTKDFSE 116

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
            IG   S  G S G   SF      +F+     F+  G+       T++HA+   +  R 
Sbjct: 117 NIGIDWSSIGESVG---SF------QFLK----FNASGI------STLVHAINDDSIARI 157

Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           LAEP L+ +SG+SASF  GG+  LY T  +ST    +    YG+ L  +  V    +I +
Sbjct: 158 LAEPNLSVLSGESASFLVGGEIPLYNTTQNST---IIKYKPYGIKLSISAKVNEHSKIRI 214

Query: 331 RIQTEVSE-----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           ++  EVS       V G NA   P+   RKA TT+EL  G + +L GL+    ++  + I
Sbjct: 215 KVDEEVSNIGKRFNVEGGNA--YPTLETRKAATTLELADGESFILGGLITKSERESLKKI 272

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P +  IPILGA FRN++   ++TE+ + AT  LVKP+A  ++  P D  +     + F F
Sbjct: 273 PFIGDIPILGAFFRNAQTENKQTELVVVATVSLVKPLAGTEVELP-DFMNTSTLERLFNF 331

Query: 446 NRVNKIYGPKEASE 459
            R+ ++   K A E
Sbjct: 332 TRIIEVKRKKVAKE 345


>gi|323493934|ref|ZP_08099051.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546]
 gi|323311875|gb|EGA65022.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546]
          Length = 441

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 184/383 (48%), Gaps = 41/383 (10%)

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           V V++   AD  +     + ++G   G  +VI+    G ++ N ++++ + +  L+ T+ 
Sbjct: 45  VFVANQQIADYKIIDENKVVVYGVGQGSTSVIVYDRGGNEIYNAELVVNQSLRLLKQTII 104

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQY----------- 176
               D N+ V  V D VVL G+V + +  Q+   L  E    +  R+ Y           
Sbjct: 105 ARFPDENVVVSNVGDQVVLDGIVSSEEVKQKVYRLVGEMLKKERRRHTYELRDADGEEYD 164

Query: 177 -----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                +  +  +V+N L +   +Q+ +K+T+AEV    L ++G  +S +G          
Sbjct: 165 ELDYTSRFTYDQVINNLKVLTTEQINVKLTVAEVSSSFLTELGVTYSDSGEP-------- 216

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
               GKFV++  DF+ + ++      +V+ A       + LAEP L+ ISG+ ASF +GG
Sbjct: 217 ----GKFVNKLLDFTAQDIV------SVISASGDDKIGQVLAEPNLSVISGEQASFLAGG 266

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG--D 347
           + +   V    G  S++  +YGV L     V     I L +  EVS  +     + G   
Sbjct: 267 E-IPIAVRDEDG-ISISYKEYGVKLAMVAKVTDSENIRLTLIPEVSSIDESNKTSTGLIS 324

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P+ R R+A TTV L  G + VLAGLL  + ++    IP L  IPILGALF ++  NR +
Sbjct: 325 VPTLRTRRAQTTVHLKDGQSFVLAGLLTSEEREALTKIPFLGDIPILGALFSHTTTNRSK 384

Query: 408 TEIFIAATPFLVKPVAMRDLSRP 430
           TE+ I AT  LV PV    +  P
Sbjct: 385 TELIIVATVNLVDPVESEQVKLP 407


>gi|258620803|ref|ZP_05715838.1| Flp pilus assembly protein [Vibrio mimicus VM573]
 gi|258587001|gb|EEW11715.1| Flp pilus assembly protein [Vibrio mimicus VM573]
          Length = 444

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 121/401 (30%), Positives = 188/401 (46%), Gaps = 44/401 (10%)

Query: 53  GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL 112
           G  K I L+  +D   V V+D T AD  +     + ++G   G  +VI+    G ++ N 
Sbjct: 31  GAAKTINLKRQIDT--VFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGGNEIYNS 88

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--- 169
           ++++ + +  L+ TL     D +I V  V D VVL G V + +   +   L    L    
Sbjct: 89  EVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLKKNV 148

Query: 170 --------QSGRN------QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
                   ++G N      QY A      V+N L +   +Q+ +K+TIAEV    L ++G
Sbjct: 149 SKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLSELG 208

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
             +   G           D G KF ++  DF+ + ++       ++ A       + LAE
Sbjct: 209 VSYGDIG---------GGDVG-KFYNKLLDFTAQDIV------AIIAASGNDDIGQVLAE 252

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L+ ISG++ASF  GG+         T   ++   +YG+ L     V     I L +  
Sbjct: 253 PNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLSLLP 310

Query: 335 EVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           EVS  +  VN  D      PS + RKA TTV+L  G + VLAGLL  + ++    IP+L 
Sbjct: 311 EVS-SLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPILG 369

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            IPILGALF +++ +R++TE+ I AT  LV PV    +  P
Sbjct: 370 DIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLP 410


>gi|121534343|ref|ZP_01666167.1| type II and III secretion system protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307113|gb|EAX48031.1| type II and III secretion system protein [Thermosinus
           carboxydivorans Nor1]
          Length = 408

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 182/365 (49%), Gaps = 32/365 (8%)

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           VQ V V++P  ADV+V S   + + GK  G   + +    G+    +++ +  D A +  
Sbjct: 44  VQRVAVANPEIADVLVVSGTEVLVVGKAPGLTTMHVWTEAGRATYEVEVGV--DDAKVAG 101

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
            ++  +    IRV  V+ TV+L G V T Q   RA +L+  +               KV+
Sbjct: 102 EIKSILGYDGIRVSKVNRTVILEGAVDTQQQKARAEKLAAVY-------------GDKVV 148

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-SEGGD 244
           +LL +    QV ++  + E+ R  +K++G +    G+S+    +F   FG   + S+ GD
Sbjct: 149 SLLEVLRPVQVKIEAKVIEINRQKIKELGIKW---GNSADTPGTFI--FGQSALNSKVGD 203

Query: 245 FSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             V G L  ++     L AL ++ A + L++P +  +SG  AS   GGQ +   V+    
Sbjct: 204 --VFGDLGGYADINAQLSALVKSGAAKVLSQPNVVTLSGDKASIMIGGQ-IPVPVAQDNN 260

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAG-DMPSYRVRKA 356
             ++   DYG+ L   P V   G I  R++ EVS         I + AG ++P  R+RKA
Sbjct: 261 KITIEWKDYGIKLDIAPEVNGDGLIQSRVKAEVSSLDYNSANSIKLGAGMEIPPVRLRKA 320

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T + L SG T+ + GL+  +  +    +P+L  +P+LG LFR++ F R ETE+ +  TP
Sbjct: 321 ETAIALSSGQTMAIGGLIATETSKDVVKVPMLGDLPVLGHLFRSTSFRRGETELLVLITP 380

Query: 417 FLVKP 421
            LV P
Sbjct: 381 SLVNP 385


>gi|262173894|ref|ZP_06041571.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus MB-451]
 gi|261891252|gb|EEY37239.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus MB-451]
          Length = 419

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 121/401 (30%), Positives = 188/401 (46%), Gaps = 44/401 (10%)

Query: 53  GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL 112
           G  K I L+  +D   V V+D T AD  +     + ++G   G  +VI+    G ++ N 
Sbjct: 6   GAAKTINLKRQIDT--VFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGGNEIYNS 63

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--- 169
           ++++ + +  L+ TL     D +I V  V D VVL G V + +   +   L    L    
Sbjct: 64  EVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLKKNV 123

Query: 170 --------QSGRN------QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
                   ++G N      QY A      V+N L +   +Q+ +K+TIAEV    L ++G
Sbjct: 124 SKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLSELG 183

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
             +   G           D G KF ++  DF+ + ++       ++ A       + LAE
Sbjct: 184 VSYGDIG---------GGDVG-KFYNKLLDFTAQDIV------AIIAASGNDDIGQVLAE 227

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L+ ISG++ASF  GG+         T   ++   +YG+ L     V     I L +  
Sbjct: 228 PNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLSLLP 285

Query: 335 EVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           EVS  +  VN  D      PS + RKA TTV+L  G + VLAGLL  + ++    IP+L 
Sbjct: 286 EVS-SLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPILG 344

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            IPILGALF +++ +R++TE+ I AT  LV PV    +  P
Sbjct: 345 DIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLP 385


>gi|262164949|ref|ZP_06032687.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus VM223]
 gi|262027329|gb|EEY45996.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus VM223]
          Length = 444

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/401 (30%), Positives = 188/401 (46%), Gaps = 44/401 (10%)

Query: 53  GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL 112
           G  K I L+  +D   V V+D T AD  +     + ++G   G  +VI+    G ++ N 
Sbjct: 31  GAAKTINLKRQIDT--VFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGGNEIYNS 88

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--- 169
           ++++ + +  L+ TL     D +I V  V D VVL G V + +   +   L    L    
Sbjct: 89  EVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLKKNV 148

Query: 170 --------QSGRN------QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
                   ++G N      QY A      V+N L +   +Q+ +K+TIAEV    L ++G
Sbjct: 149 SKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLSELG 208

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
             +   G           D G KF ++  DF+ + ++       ++ A       + LAE
Sbjct: 209 VSYGDIG---------GGDVG-KFYNKLLDFTAQDIV------AIIAASGNDDIGQVLAE 252

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L+ ISG++ASF  GG+         T   ++   +YG+ L     V     I L +  
Sbjct: 253 PNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLSLLP 310

Query: 335 EVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           EVS  +  VN  D      PS + RKA TTV+L  G + VLAGLL  + ++    IP+L 
Sbjct: 311 EVS-SLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPILG 369

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            IPILGALF +++ +R++TE+ I AT  LV PV    +  P
Sbjct: 370 DIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLP 410


>gi|312882144|ref|ZP_07741893.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370190|gb|EFP97693.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 456

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 195/394 (49%), Gaps = 23/394 (5%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    +QV + +  V +S+P  AD  V +  T+ ++   VGQ+ +I+ G D   +L
Sbjct: 34  SITLNDGQHIQVNMPIGKVFISNPEVADYKVINENTLVVYANEVGQSRLIVYGTDSSVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ +++ +   L+    D  ++V+ +   V + G+V + +       L  T L +
Sbjct: 94  SDRIVVDLNLSEVRRQLKFHYPDVQVKVQSIGTQVAVSGVVDSEETRDDIYRLVATLLGR 153

Query: 171 SGRNQYANSSSKKVMNLLNIAGED--------QVTLKVTIAEVRRDILKQIGFQHSITGS 222
               ++ N   K      N   E+         +T +  I  ++    +Q+  + SI   
Sbjct: 154 EKTEKW-NQVEKLTFESENTRYEEPESMVFARNMTWEGIIERIKVTTTQQVNVKISIAHV 212

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTA 279
           +    ++   D+G    +  G F    V D+F+     T++ AL      + LAEP LT 
Sbjct: 213 TESFGQTVGIDWGS-IGARVGSF----VFDQFNAANLGTIISALGNDEIAQVLAEPNLTV 267

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
           +SG+SASF +GG+     +  +    +V+   +G+ L+ T  VLS  +I +++   VSE 
Sbjct: 268 LSGESASFLAGGE--VPVIVLNDRNLTVSFKQFGIGLNLTAKVLSRDKIQMQLAPSVSEV 325

Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGA 396
              +      +P + +RKA TTVEL  G + +L GL+   D +++++ +P++  IP+ GA
Sbjct: 326 EGFVEFEGLKVPQFTLRKALTTVELSDGDSFILGGLMSSADFEEMQK-VPVIGDIPLFGA 384

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            FR ++  R+ TE+ I AT  LV+PV   D+  P
Sbjct: 385 AFRKAKTERKRTELIIVATVNLVEPVRPNDIQVP 418


>gi|197118220|ref|YP_002138647.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
 gi|197087580|gb|ACH38851.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
          Length = 494

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 200/428 (46%), Gaps = 63/428 (14%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           +N+ +++ +    + V ++ P  A++VV SP  + + GK VG   +I+    GK     D
Sbjct: 36  VNRSVLVDLHTKSERVSIASPDVAELVVISPTQLQINGKKVGSTTLIVWDTAGKTSF-FD 94

Query: 114 ILIERD-------IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + ++R+       I  L+  +++     NI+V+  +DT+VL G     Q   +A++L++ 
Sbjct: 95  VRVKRNESVLESQIEALQDQIQQMAPKDNIKVDYANDTIVLSGTAANEQTVAKALQLAQA 154

Query: 167 FLSQSG---------------RNQYANSSSK------------KVMNLLNIAGEDQVTLK 199
           + + +G               R+ Y  S ++             V+N + I    QV L+
Sbjct: 155 YTAGNGSKAGAPATDPPLDTSRSSYQLSETQTGRQGGDADTVITVLNHVEIVEPQQVLLE 214

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK----GV----- 250
           V +A+V +  LK +G    I G+S+    +      G+   +  D SV+    G+     
Sbjct: 215 VKVAQVDKTALKSLGISAFIRGASAEGFSNLVGAPVGELAIKNPDGSVRSQATGIAGPIP 274

Query: 251 -------LDRF-----SFE----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                  +D +     SF+     VL AL      + LAEP L   SGQ   F +G +  
Sbjct: 275 GLANFTPIDSYQLGVSSFKAGIGAVLRALVTKNLAKVLAEPNLMVQSGQVGKFLAGSKIP 334

Query: 295 YKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSY 351
           Y  VS   +  ATS+   D GV L+F P VL  G I L+I       + GV A    P  
Sbjct: 335 YSIVSGVGALSATSIQFIDVGVKLNFKPEVLENGLISLKIDPAEVSSITGVLAVNGYPII 394

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+  T V+L  G +++LAGLL+++  +    IP+L  IPILGALFR+++ + +E E+ 
Sbjct: 395 DTREVRTRVKLKDGESLILAGLLQEEAIKAMSKIPILGDIPILGALFRSTQDDIKEKELV 454

Query: 412 IAATPFLV 419
              TP LV
Sbjct: 455 FFITPKLV 462


>gi|78066131|ref|YP_368900.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
 gi|77966876|gb|ABB08256.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
          Length = 443

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 178/384 (46%), Gaps = 51/384 (13%)

Query: 66  VQDVLVSDPTKADV-VVHSPRT-MYLFGKNVGQANVILI--GHDGKQMLNLDILIERDIA 121
           +Q V V DP+ ADV VV   R  + L  K+ G  NV++   GHD   + N+ +       
Sbjct: 46  LQRVAVGDPSVADVMVVKGGRGGVLLIAKSAGATNVMIWERGHDEPTVYNVSVT------ 99

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
                 R  +      V     T V+ G   ++   QRAV  ++T   + G    A++  
Sbjct: 100 --SGAARALLDGGTSSVNTYGGTTVIGGASGSLDGHQRAVHAAKTVSGKDGTTIDAST-- 155

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------------------SITGSS 223
                   I+G++ V + V + E  R +LKQ G                     SITGS 
Sbjct: 156 --------ISGKNVVQVDVRVVEFSRSVLKQAGLNFFKQSNGFSFGAFAPTGLTSITGSP 207

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
            G + ++  +     +S   +  V  V      +  L  LE     R LA+PTL A+SGQ
Sbjct: 208 GG-ALTYNTNV---PISSAFNLVVNSVSHGLFAD--LSILEANNLARVLAQPTLVALSGQ 261

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339
           SA+F +GG+ +   V  S G  S+    YGV L  TPTVL+P RI L++  E S+     
Sbjct: 262 SANFLAGGE-IPVPVPQSLGTISIEWKPYGVGLTVTPTVLNPRRIALKVAPESSQLDFVH 320

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            I +N   +P+   R+ADTTVEL  G + V+ GL+  +       +P L  +PI+GA F+
Sbjct: 321 SITINGVQVPALTTRRADTTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFK 380

Query: 400 NSRFNREETEIFIAATPFLVKPVA 423
           N  + + + E+ I  TP LV P+A
Sbjct: 381 NLSYQQSDKELVIIVTPHLVAPIA 404


>gi|152981036|ref|YP_001355006.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille]
 gi|151281113|gb|ABR89523.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille]
          Length = 429

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 183/392 (46%), Gaps = 34/392 (8%)

Query: 60  LQVPVDVQDVLVSDPTKADVVV-----HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114
           L+ P D++ + V+DP  AD+++       P ++ L GK  G  +V     +G   +    
Sbjct: 35  LKTPADLERIAVADPEVADILIIKGSNKRPGSIMLVGKKPGSTSVTAWQRNGPTKVWQ-- 92

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
                   ++  L+  + +    +++ SD+  L G   ++      V      +   G+ 
Sbjct: 93  ------VSVQSALQGLLPEEGAELQINSDSASLRGQSPSLLSHANTVAAGTQAV---GKE 143

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
           ++ ++S+        +A    V + V I E  R++LK+ GF   I   + G + SF  + 
Sbjct: 144 KFLDTST--------VATSGMVQIDVQIVEFSRNVLKEAGFDF-IFNQNRGATFSFGLNN 194

Query: 235 GGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
               +S      V     +L   S    +  +E+    R LA P+L A+SGQSASF +GG
Sbjct: 195 FSTILSSTVQTPVSQAFNLLGSTSVNARVKLIEQNGLARVLARPSLIALSGQSASFLAGG 254

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD 347
           + L    S   G T++    +G+ L  TPTVLS  RI L++  E S+      I  N   
Sbjct: 255 E-LPVPQSGGLGTTTIIYKAFGIGLTVTPTVLSANRIALKVAPEASDLDYANAIVTNNMM 313

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P+   R+ +TT+EL  G + V+ GL+    +     +P L  +PILG  FR+ +++++E
Sbjct: 314 IPAISTRRTETTLELGDGESFVIGGLVSRTTKSNVNKVPFLGDLPILGPFFRSMQYSQDE 373

Query: 408 TEIFIAATPFLVKPVAM-RDLSRPDDHYSVED 438
            E+ I ATP LVKP+A    L  P D     D
Sbjct: 374 KELVIIATPHLVKPIAKGAQLPLPGDDKERRD 405


>gi|167562915|ref|ZP_02355831.1| type II/III secretion system protein [Burkholderia oklahomensis
           EO147]
          Length = 432

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 197/425 (46%), Gaps = 62/425 (14%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPR-TMYL 89
           A AA +   ++  G  +++S+G N          VQ V V DP  ADV VV   R ++ L
Sbjct: 11  ARAAEMGTIELATGAQRQVSVGRN----------VQRVAVGDPNVADVLVVKGGRGSVLL 60

Query: 90  FGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
             K  G  ++++   G D   +  ++++            R  +   +  V+    T V+
Sbjct: 61  VAKAAGSTSLMVWERGRDEPAVYTVNVV--------SGAARALLDGGSPSVKAYGGTAVV 112

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T+    RA+ L +    + G           V++   + G++ V + V + E  R
Sbjct: 113 SGSAATLDAHARALALGKGMAGKDG----------GVVDASTVGGKNVVQVDVRVVEFSR 162

Query: 208 DILKQIGFQH------------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
            +LKQ G                     S+TG ++ PS S +A+     +S   +  V G
Sbjct: 163 SVLKQAGLNFFKQNNGFTFGAFAPSGLASVTGGAT-PSMSVSANI---PISSAFNL-VVG 217

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              R  F   L  LE     R LA+PTL A+SGQSASF +GG+ +   V  S G  S+  
Sbjct: 218 SATRGLFAD-LSILEANNLARVLAQPTLVALSGQSASFLAGGE-IPVPVPQSLGTISIDW 275

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSG 365
             YGV L  TPTVLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G
Sbjct: 276 KPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDG 335

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            + V+ GL+  +     + +P L  +PI+G  F++  + + + E+ I  TP LV P+A +
Sbjct: 336 ESFVIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-K 394

Query: 426 DLSRP 430
           + S P
Sbjct: 395 NASLP 399


>gi|167570105|ref|ZP_02362979.1| type II/III secretion system protein [Burkholderia oklahomensis
           C6786]
          Length = 434

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 197/425 (46%), Gaps = 62/425 (14%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPR-TMYL 89
           A AA +   ++  G  +++S+G N          VQ V V DP  ADV VV   R ++ L
Sbjct: 13  ARAAEMGTIELATGAQRQVSVGRN----------VQRVAVGDPNVADVLVVKGGRGSVLL 62

Query: 90  FGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
             K  G  ++++   G D   +  ++++            R  +   +  V+    T V+
Sbjct: 63  VAKAAGSTSLMVWERGRDEPAVYTVNVV--------SGAARALLDGGSPSVKAYGGTAVV 114

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T+    RA+ L +    + G           V++   + G++ V + V + E  R
Sbjct: 115 SGSAATLDAHARALALGKGMAGKDG----------GVVDASTVGGKNVVQVDVRVVEFSR 164

Query: 208 DILKQIGFQH------------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
            +LKQ G                     S+TG ++ PS S +A+     +S   +  V G
Sbjct: 165 SVLKQAGLNFFKQNNGFTFGAFAPSGLASVTGGAT-PSMSVSANIP---ISSAFNL-VVG 219

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              R  F   L  LE     R LA+PTL A+SGQSASF +GG+ +   V  S G  S+  
Sbjct: 220 SATRGLFAD-LSILEANNLARVLAQPTLVALSGQSASFLAGGE-IPVPVPQSLGTISIDW 277

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSG 365
             YGV L  TPTVLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G
Sbjct: 278 KPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDG 337

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            + V+ GL+  +     + +P L  +PI+G  F++  + + + E+ I  TP LV P+A +
Sbjct: 338 ESFVIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-K 396

Query: 426 DLSRP 430
           + S P
Sbjct: 397 NASLP 401


>gi|161524905|ref|YP_001579917.1| type II and III secretion system protein [Burkholderia multivorans
           ATCC 17616]
 gi|189350345|ref|YP_001945973.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
 gi|160342334|gb|ABX15420.1| type II and III secretion system protein [Burkholderia multivorans
           ATCC 17616]
 gi|189334367|dbj|BAG43437.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
          Length = 443

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 185/405 (45%), Gaps = 58/405 (14%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVILI--G 103
           ++++G  + I    P+  Q V V DP  ADV++       ++ L  K  G  NV+L   G
Sbjct: 28  ELAVGAQRQISAGRPL--QRVAVGDPAIADVLIMKGSRSSSVLLIAKAPGATNVMLWERG 85

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
            D   + +++++     A L+        DS  RV     T VL G   ++   +RAV +
Sbjct: 86  RDEPTVWSVEVVDAAAHAVLD--------DSAPRVNAYGGTAVLRGTSASLDAHERAVAV 137

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--HSITG 221
                   G+N     +   V++   +AG+  V + V + E  R +LKQ+GF       G
Sbjct: 138 --------GKNMAGKGA---VIDRSTLAGKSVVQVDVRVVEFSRSVLKQVGFNFFKQSNG 186

Query: 222 SSSG---PS-------------KSFAADFGGKFVSEGG---DFSVKGVLDRFSFETVLHA 262
            S G   PS               +    G    S      + + +G+    S       
Sbjct: 187 FSFGSFLPSGVQSFGGGSGPGSAGYIPTLGSPVASAFNLVVNAAGRGIFGDLSL------ 240

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE     R LAEPTL A+SGQSASF +GG+    +     G+T++    YGV L  TPTV
Sbjct: 241 LEANNLARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTV 299

Query: 323 LSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           LSP RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+    
Sbjct: 300 LSPQRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQT 359

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                 +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A
Sbjct: 360 MSNVSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIA 404


>gi|33593025|ref|NP_880669.1| putative type II secretion system protein [Bordetella pertussis
           Tohama I]
 gi|33563400|emb|CAE42276.1| putative type II secretion system protein [Bordetella pertussis
           Tohama I]
 gi|332382437|gb|AEE67284.1| putative type II secretion system protein [Bordetella pertussis CS]
          Length = 449

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 125/412 (30%), Positives = 194/412 (47%), Gaps = 44/412 (10%)

Query: 69  VLVSDPTKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           V ++DP  ADV V +P       + L G+  G   + +     +   +  +   R +  +
Sbjct: 61  VAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVWSRGSR---DPQVWTVRVLPQV 117

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           +  L R       +V+M  D+ V+ GM  + +  + A E +            A   + K
Sbjct: 118 QAALARRGVGGGAQVDMAGDSGVVTGMAPSAEAHRGAAEAAAA----------AAGGNDK 167

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGKFVS 240
           V+++  I     V ++V + E+ R ++K +G       + SGP     S   D      +
Sbjct: 168 VVDMSQINTSGVVQVEVKVVELARSVMKDVGINFR---ADSGPWSGGVSLLPDL-----A 219

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            GG F +     R  F   L  L+     R LAEPTL A+SGQSASF +GG+ +   VS+
Sbjct: 220 SGGMFGMLSYTSR-DFSASLALLQNNGMARVLAEPTLLAMSGQSASFLAGGE-IPIPVSA 277

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD-------MPSY 351
             G TSV    +G+ L  TPTV+S  RI L++  E SE     G+++ D       +P+ 
Sbjct: 278 GLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYANGISSIDSNNRITVIPAL 337

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           R RKADT VEL  G T V++GL+    +     +PLL  +PI+GA FRN ++++E+ E+ 
Sbjct: 338 RTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPIIGAFFRNVQYSQEDRELV 397

Query: 412 IAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           I  TP LV+P+A    L  P     V D   A F      + GP    ++ G
Sbjct: 398 IVVTPRLVRPIARGVTLPLPGARQEVSD---AGFNAWGYYLLGPMSGQQMPG 446


>gi|33596969|ref|NP_884612.1| putative type II secretion system protein [Bordetella parapertussis
           12822]
 gi|33600811|ref|NP_888371.1| putative type II secretion system protein [Bordetella
           bronchiseptica RB50]
 gi|33566420|emb|CAE37673.1| putative type II secretion system protein [Bordetella
           parapertussis]
 gi|33568411|emb|CAE32323.1| putative type II secretion system protein [Bordetella
           bronchiseptica RB50]
          Length = 448

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 125/412 (30%), Positives = 194/412 (47%), Gaps = 44/412 (10%)

Query: 69  VLVSDPTKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           V ++DP  ADV V +P       + L G+  G   + +     +   +  +   R +  +
Sbjct: 60  VAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVWSRGSR---DPQVWTVRVLPQV 116

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           +  L R       +V+M  D+ V+ GM  + +  + A E +            A   + K
Sbjct: 117 QAALARRGVGGGAQVDMAGDSGVVTGMAPSAEAHRGAAEAAAA----------AAGGNDK 166

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGKFVS 240
           V+++  I     V ++V + E+ R ++K +G       + SGP     S   D      +
Sbjct: 167 VVDMSQINTSGVVQVEVKVVELARSVMKDVGINFR---ADSGPWSGGVSLLPDL-----A 218

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            GG F +     R  F   L  L+     R LAEPTL A+SGQSASF +GG+ +   VS+
Sbjct: 219 SGGMFGMLSYTSR-DFSASLALLQNNGMARVLAEPTLLAMSGQSASFLAGGE-IPIPVSA 276

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD-------MPSY 351
             G TSV    +G+ L  TPTV+S  RI L++  E SE     G+++ D       +P+ 
Sbjct: 277 GLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYANGISSIDSNNRITVIPAL 336

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           R RKADT VEL  G T V++GL+    +     +PLL  +PI+GA FRN ++++E+ E+ 
Sbjct: 337 RTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPIIGAFFRNVQYSQEDRELV 396

Query: 412 IAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           I  TP LV+P+A    L  P     V D   A F      + GP    ++ G
Sbjct: 397 IVVTPRLVRPIARGVTLPLPGARQEVSD---AGFNAWGYYLLGPMSGQQMPG 445


>gi|87308911|ref|ZP_01091049.1| probable type II secretion system protein [Blastopirellula marina
           DSM 3645]
 gi|87288254|gb|EAQ80150.1| probable type II secretion system protein [Blastopirellula marina
           DSM 3645]
          Length = 540

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 173/386 (44%), Gaps = 46/386 (11%)

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI--GHDGK-QMLNLDILIERD------ 119
           V +++P   +V   SP  M + G  VGQ  + L     DG    L   I++  D      
Sbjct: 84  VAITNPAVVEVNEFSPTEMEVIGSAVGQTTMTLWFNNADGTVSTLRYLIIVSNDDNRADL 143

Query: 120 -IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
               L+  +      S +++  ++D +++ G  R   DS+ A E+      Q+  NQ  N
Sbjct: 144 EYGKLQAHINEMFPYSRVQLFPIADKLIVRGQAR---DSKEAAEILAVIGDQA-VNQNGN 199

Query: 179 SS--------------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
            S                    +  ++NLL + GE QV LKV +AE+ R   +++G   S
Sbjct: 200 ISGSGTVNVGSVARLPDAEDLETTSLINLLEVPGEQQVMLKVRVAELSRQAARELGMDFS 259

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           +   S          F       GG  ++  +LD    E  + A     + + LAEPTL 
Sbjct: 260 VMEES----------FSIAHTIMGGAGNLSAILDGGDVELFIRAFSSNGSAKILAEPTLM 309

Query: 279 AISGQSASFTSGGQHLYKTVSS--STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            +SGQSASF +GG+    T       GA S +   +G  + F PTV+    I L +   V
Sbjct: 310 TLSGQSASFIAGGEFAVPTAVGVGGIGAVSTSFRGFGTQVQFMPTVMDKDMIRLSVAPSV 369

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           S     ++   +P   +R A TTV+L  G  + +AGL++D+ +  +  +PLL  IP +GA
Sbjct: 370 SSINQSLSVDGVPGLDIRGAVTTVDLREGQWLAIAGLIQDEQEASRSRLPLLGDIPYVGA 429

Query: 397 LFRNSRFNREETEIFIAATPFLVKPV 422
            F +    R ETE+ I  +P LV P+
Sbjct: 430 AFGSQTTKRIETELVILVSPELVHPM 455


>gi|117618977|ref|YP_855991.1| protein transporter, outer bacterial membrane secretin (secretin)
           family protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117560384|gb|ABK37332.1| protein transporter, outer bacterial membrane secretin (secretin)
           family [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 465

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 189/431 (43%), Gaps = 50/431 (11%)

Query: 79  VVVHSP--RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           V VHSP  + + ++G+ VG+ ++++   DG+ + +  + +  D+A L+   R+    S +
Sbjct: 49  VRVHSPSDQQLLIYGRKVGRTDLVVTALDGRTLGHYRVQVVADLAPLKQLARQHFPQSRL 108

Query: 137 RVEMVSDTVVLHGMV-----------------RTIQDSQRAVELSETFLSQSGRN----- 174
                   +V+ G V                 + IQ    A+  +     Q+G       
Sbjct: 109 SFSESGGAIVVAGEVTSPLQAHEILTMVEGFAKGIQPQGSALGTTAPVPPQTGSQDEGAA 168

Query: 175 -------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                  QYA+     V+N L +AG DQ+ + V I E++R   +Q+G + S  G      
Sbjct: 169 VAGGGSGQYAH-----VINQLRLAGSDQINISVRIVEMQRTTSEQLGLRWSAMGEY---- 219

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                  G +F       S  G  D      ++ AL   + +  LAEP LTA SG++A+F
Sbjct: 220 LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIIDALVENSLVNVLAEPNLTAKSGEAATF 279

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGV 343
            SGG+  +   +   G   +    +G+ L  TPT+L   RI L +  EVS    E  + +
Sbjct: 280 MSGGEFPFPVGNGDNGP-EIEFKKFGISLELTPTLLDNNRISLTVSPEVSTLSRENSVSI 338

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +P    R+  TT+EL  G +  LAGL++    Q  E +P L +IP L   F ++ F
Sbjct: 339 AGVVVPGIETRRTTTTIELADGQSFALAGLVRTHRNQSSEALPFLGEIPGLAPFFGSNGF 398

Query: 404 NREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
             +E+E+ I AT  LV+P +    LS P DHY      +  FF  +    G  E    + 
Sbjct: 399 KNQESELVIIATARLVQPTSDPLSLSTPLDHYRAPSRFERLFFTDM----GSTERPGAQA 454

Query: 463 QNYKGAIGFIY 473
               G  G+ Y
Sbjct: 455 TRLFGNYGYSY 465


>gi|323495637|ref|ZP_08100708.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
           pilus assembly [Vibrio sinaloensis DSM 21326]
 gi|323319272|gb|EGA72212.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
           pilus assembly [Vibrio sinaloensis DSM 21326]
          Length = 440

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 207/449 (46%), Gaps = 70/449 (15%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           L+R FFT   I ++SS  S   L               V +G+G+  +I   +       
Sbjct: 3   LKRIFFTF-CIAVWSSLASSQVL---------------VNLGEGEAKAITTKQ------- 39

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            ++  V +S+P  AD  V     + +FGK VG  +++    +   +++  +++ + + H+
Sbjct: 40  -EIASVFISNPEIADYQVVDKNKLVVFGKKVGSVSLLAFDDNSNTIVSRKLVVNKSLIHI 98

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMV--RTIQDS--------------QRAVEL---S 164
           +  ++    + +I +  + + VVL G V    I+D                  +E    +
Sbjct: 99  QQQIQLRYPNISISLYNLEEQVVLAGKVPSEKIRDEINILVGELLEKEYEDHKIEWKIGT 158

Query: 165 ETF-LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           ET+ +    R  Y       ++N + +A   QV +K++IAEV +  L++ G Q+  +G  
Sbjct: 159 ETYEMEFMTRRHYLG-----IVNNIEVATTKQVNVKLSIAEVSQSFLEEFGVQYGSSGQG 213

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           +G            FV +  +FS   ++      +V+ AL   T  + LAEP L+ ISG+
Sbjct: 214 AGT-----------FVDQLVNFSASDIV------SVITALGDDTVGQVLAEPNLSVISGE 256

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVI 341
           SA F  GG+     V+   G T+V   ++G+ L     VL   +I L +  EVS  +   
Sbjct: 257 SAHFLVGGE--LPVVTIIDGGTNVLYKEFGIRLEMMAKVLEDDKIKLSLLPEVSSIDSQY 314

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                 +P+ + R+A TTVEL  G + VL GLL  + ++    +P +  +PILGALFR+S
Sbjct: 315 QNERYSLPALKTRRARTTVELGDGQSFVLGGLLSTEDRESLRRVPFIGDVPILGALFRHS 374

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRP 430
              R  TE+ I AT  LV PV    +  P
Sbjct: 375 ETVRNRTELVIVATVNLVNPVNPSQIQLP 403


>gi|149178342|ref|ZP_01856934.1| probable type II secretion system protein [Planctomyces maris DSM
           8797]
 gi|148842868|gb|EDL57239.1| probable type II secretion system protein [Planctomyces maris DSM
           8797]
          Length = 546

 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 194/437 (44%), Gaps = 60/437 (13%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD--GKQMLNLDILI 116
           IL++ +DV  V ++DP+K +VV    + + + GK+ G   + L   D    Q+L++ + +
Sbjct: 77  ILKMKMDVFRVAIADPSKIEVVAFGSQEVEVIGKDTGTTTMTLWLGDEANPQILSVQVKV 136

Query: 117 ERD----------IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL--- 163
           E D              +  +  F  +S I++   +D +++ G  R   D Q AV++   
Sbjct: 137 EGDNSIEDLRRMEYGEFQKMINEFFPNSKIQLVPFADKLIVRGQAR---DEQEAVQIITI 193

Query: 164 -----------------SETFLSQSGRNQYANSS---SKKVMNLLNIAGEDQVTLKVTIA 203
                               F   +  + +   +      V+++L + GE Q+ LKV IA
Sbjct: 194 IRARSGSGGGQGGGGGGGSLFADGAAADPFPGGAMLPEATVIDMLKVPGEKQIMLKVRIA 253

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------GKFVSEGGDFSVKGVLDRFS 255
           ++ R   +        T S++  ++S   DFG         + +  GG   V        
Sbjct: 254 QIDRSAAR--------TASTNIIAQS--GDFGWAQLFTGVAQQLGNGGTGLVTASFTSSD 303

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HDYG 313
            +  + AL +    + LAEP L  ISG++A+F SGG+    TV    GA + TT    +G
Sbjct: 304 VDVFISALAQNGYAKILAEPNLVTISGRTANFISGGEFAVPTVVGVGGAQAATTTFKGFG 363

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
             L F PTVL   RI L++    S     + +G +    V+   TTV+L  G  + +AGL
Sbjct: 364 TQLSFLPTVLDKDRIRLQVSPSFSTVNPALTSGGVLGVNVQAVTTTVDLREGQVLAIAGL 423

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR--PD 431
           L++  +     +P +  IP++G LF N   +R+ETE+ I  +P LV P+   D     P 
Sbjct: 424 LQEQQRGDLNRVPFIGDIPLVGPLFSNKGVSRDETELIILISPELVHPMEPEDAPTVLPG 483

Query: 432 DHYSVEDDAKAFFFNRV 448
              +   D   FF N +
Sbjct: 484 MEVTEPGDVDFFFMNNI 500


>gi|302391029|ref|YP_003826849.1| type II and III secretion system protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302203106|gb|ADL11784.1| type II and III secretion system protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 414

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 180/381 (47%), Gaps = 35/381 (9%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           K + +G  K  +L+V VD++   V+DP  AD+V  S   + + GK+ G   + L    G 
Sbjct: 32  KILQLGTGKSELLKV-VDLERAAVADPEVADIVTISQEELLINGKSEGTTTLHLWDQKGH 90

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           +   +++  E   A +   ++  I    ++V  V + ++L G VR     QR  +++  F
Sbjct: 91  RSYQVEVYKEE--ARVIKQIKELIGTDTVKVAKVEENIILSGKVRDQTQLQRVKKIAGVF 148

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                         +KV+N L +    QV L   + E+ + + +++GF    T  +SG  
Sbjct: 149 -------------GEKVINELQVTNSLQVLLAAQVFEIDKAVSEELGFDWYST--NSGGV 193

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
           +S  A  G    S    F +      +   T L AL      + LA+P L   SGQ ASF
Sbjct: 194 ESGTATLGETTTSR---FGIGHYERLYQLRTKLKALIEDGKAKLLAKPKLVTKSGQKASF 250

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIG 342
             GG+    T  SS G  +V   +YGV     PTV   G++   +  +VS+      V  
Sbjct: 251 NVGGEIPVVTADSS-GEQTVVWKNYGVQFEVEPTVTPTGKLETYLHPKVSQLDWANAVDY 309

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK----DDIQQLKEGIPLLSKIPILGALF 398
            N+G +P+ +  +  T V +  G  + + GLL+    +DI++    IPLLS++PILG LF
Sbjct: 310 GNSGQLPAIKSSEVKTQVVIKDGAALAIGGLLQQYRSEDIKR----IPLLSQLPILGELF 365

Query: 399 RNSRFNREETEIFIAATPFLV 419
           ++  F  E++E+ I  TP ++
Sbjct: 366 KSKSFREEKSELIILVTPKII 386


>gi|91775995|ref|YP_545751.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91709982|gb|ABE49910.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 453

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 201/435 (46%), Gaps = 53/435 (12%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
           + ++I + + +  + +  V +Q V V++P    V + SP+TM +  K VG   + L    
Sbjct: 26  QAEEIMVSMGQQRLYEHTVTLQRVAVANPEVLAVTLTSPKTMMIVPKAVGATEISLWDSQ 85

Query: 106 GKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
             Q    L + +   +A LE    +    + ++VE   + + L G  R++++  RA+E  
Sbjct: 86  SVQPSRVLQVSVTPSLA-LEGQGLKAADAAGLQVEAAGNGLALSGEARSLEEHARALE-- 142

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITG 221
                         S  K+    L++   +    V + + + EV R    + GF      
Sbjct: 143 --------------SLQKERQGALDVTSSEFDSHVQIDIKVVEVSRQNAMRFGFLMGKNN 188

Query: 222 SSSGPSKSFAAD---FGGKFVSEGG-DFSVKG----VLDRFS---------FETVLHALE 264
           S+S       A    F G     GG DFS       VL+ F+             L  LE
Sbjct: 189 SASRDGFGIVASPNSFSGVEAGSGGFDFSSTSGFLPVLNAFNVVFGNHGSGLLGTLSILE 248

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVLHFTPTV 322
                 TLAEP+L+AISGQ+A+F +GG+     +T   S  A ++   +YGV L  TPT+
Sbjct: 249 GNGFAYTLAEPSLSAISGQTATFLAGGEFPVPIRTGGGSDSAITIRYKEYGVRLMLTPTI 308

Query: 323 LSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           LS  RI L++  EVSE      +      +P  +VR+ +T+V L +G + V++G++  + 
Sbjct: 309 LSGERIFLKVAPEVSELDFANAVQTGGVAVPGLKVRRTETSVSLGNGESFVISGMVSRNT 368

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD------D 432
               + +P L  IPI+GA F + RF+RE+ E+ +  TP LV+P+A R+   P        
Sbjct: 369 INNIDKVPGLGNIPIIGAFFSSKRFDREDKELLMVVTPRLVRPIA-RNAELPALPGSELK 427

Query: 433 HYSVEDDAKAFFFNR 447
           HY  +     FF +R
Sbjct: 428 HY--KPSFSEFFLSR 440


>gi|253701800|ref|YP_003022989.1| type II and III secretion system protein [Geobacter sp. M21]
 gi|251776650|gb|ACT19231.1| type II and III secretion system protein [Geobacter sp. M21]
          Length = 451

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 44/406 (10%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF-GKNVGQANVILIGHD 105
           G   ++ +N+ ++L +    + V ++D    DV     R   L  GK +G  N+I+   +
Sbjct: 29  GVPTTVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGSTNLIVWEEN 88

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
            +     D+ +  D   +E  +R +  + +I V+   DTVVL G V      ++A E+++
Sbjct: 89  NENPTFFDVRVVGDREAIESQIRDYAPNDDISVQYAQDTVVLSGKVANEMTGKKAEEIAK 148

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS- 224
            +             S KV+N + +    QV L+V +A+V R  LK++G    + G ++ 
Sbjct: 149 AY-------------SAKVLNHITVDEPQQVLLQVKVAQVDRTSLKRLGISAMVKGRTAE 195

Query: 225 -------GPS--KSFAADFGGKFVS---EGGDFSVKGV-----LDRFS---------FET 258
                   PS   S       +F S    G   S+ G+     LD F+            
Sbjct: 196 GFMNLVGAPSGTSSVTNSSATRFTSTEASGIAGSIPGLGSFDPLDAFNVGVSYFPAGIGA 255

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVL 316
           VL AL      + LAEP L   SG+  +F +G +  Y  + S+ GA+  S+     GV L
Sbjct: 256 VLQALSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIIFETVGVKL 315

Query: 317 HFTPTVLSPGRIGLRIQ-TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            F P VL  G I L+I   EVS     +     P    R   T VEL  G +++LAGLL+
Sbjct: 316 KFKPQVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGESLILAGLLQ 375

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           ++  +    IPLL  IPILGALFR+S+ +  E ++    TP +VKP
Sbjct: 376 EEQIKTMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVKP 421


>gi|171317113|ref|ZP_02906316.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
 gi|171097747|gb|EDT42574.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
          Length = 443

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 186/409 (45%), Gaps = 58/409 (14%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQA 97
           ++ +G  ++IS G            +Q V V DP  ADV++       ++ L  K  G  
Sbjct: 28  ELAVGAQRQISAGRT----------LQRVAVGDPAVADVLIMKGSRSGSVLLTAKAPGAT 77

Query: 98  NVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           NV+L   G D   + +++++        +   +  +  S  RV     T VL G   ++ 
Sbjct: 78  NVMLWARGRDEPTVWSVEVV--------DAAAQAVLDGSTPRVNAYGGTAVLQGTAASLD 129

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
              RA        S  G+N    S+   V++   + G++ V + V + E  R +LKQ+GF
Sbjct: 130 AHARA--------SAVGKNM---SAKGNVIDRSTVVGKNVVQVDVRVVEFSRSVLKQVGF 178

Query: 216 QH-------SITGSSSGPSKSFAADFG----------GKFVSEGGDFSVKGVLDRFSFET 258
                    S    S G  +S++   G          G  V+   +  V     R  F  
Sbjct: 179 NFFKQSNGFSFGSFSPGGVQSYSGGAGPGTGGYVPTLGSPVASAFNLVVNAA-GRGIFAD 237

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            L  LE     R LAEPTL A+SGQSASF +GG+ +        G+T++    YGV L  
Sbjct: 238 -LSLLEANNLARVLAEPTLVALSGQSASFLAGGE-IPVPAPQGLGSTAIQWKQYGVGLTL 295

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTVL+P RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+
Sbjct: 296 TPTVLNPNRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLI 355

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                     +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A
Sbjct: 356 DRQTMSNVSKVPLLGDLPIIGTFFKNLSYQQNDKELLIIVTPHLVAPIA 404


>gi|254245567|ref|ZP_04938888.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia
           PC184]
 gi|124870343|gb|EAY62059.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia
           PC184]
          Length = 443

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 183/423 (43%), Gaps = 86/423 (20%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQA 97
           ++ +G  ++IS G            +Q V V DP  ADV++       ++ L  K  G  
Sbjct: 28  ELAVGAQRQISAGRT----------LQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGAT 77

Query: 98  NVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           NV+L   G D   + N++++        +   +  +  +  RV     T VL G   +++
Sbjct: 78  NVMLWERGRDEPTIWNVEVV--------DAAAQAVLDGAAPRVNAYGGTAVLQGSAASLE 129

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
              RA  +        G+N    S    V++   + G+  V + V + E  R +LKQ+GF
Sbjct: 130 AHSRAAAV--------GKNM---SGKGVVIDRSTVPGKSVVQVDVRVVEFSRSVLKQVGF 178

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--------------------S 255
                         F    G  F    G FS  GV                        +
Sbjct: 179 NF------------FKQSNGFSF----GSFSPGGVQSYSGGSGPGTGGYVPTLGSPVASA 222

Query: 256 FETVLHA-----------LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F  V++A           LE     R LAEPTL A+SGQSASF +GG+    +     G+
Sbjct: 223 FNLVVNAAGRGIFADLSLLEANNLARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGS 281

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360
           T++    YGV L  TPTVLSP RI L++  E S+      + ++   +P    R+ADTTV
Sbjct: 282 TAIQWKQYGVGLSLTPTVLSPSRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTV 341

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL  G + V+ GL+          +PLL  +PI+G  F+N  + + + E+ I  TP LV 
Sbjct: 342 ELGDGESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFFKNLSYQQNDKELLIIVTPHLVA 401

Query: 421 PVA 423
           P+A
Sbjct: 402 PIA 404


>gi|325108090|ref|YP_004269158.1| type II and III secretion system protein [Planctomyces brasiliensis
           DSM 5305]
 gi|324968358|gb|ADY59136.1| type II and III secretion system protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 714

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 184/394 (46%), Gaps = 48/394 (12%)

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
           DP    V   +P  + +   + G   ++L+    K    +++ +E D+ +L+  + RF  
Sbjct: 95  DPAVLTVSALTPHRVRIQAVSAGVTTLVLVDEFDK-TYTIEVFVEGDVRYLQSYIDRFFP 153

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
           DS+++   V D+VVL G+V       +  E++E F               KV+N +    
Sbjct: 154 DSSVKAVKVKDSVVLRGVVADPSHISQITEVAEQFF-------------PKVINHMQFGA 200

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS-ITGS---SSGPSKSFAADFGGKF-------VSE 241
            +QV L+V I E +R  ++Q+GF  S + GS   SS P  S ++  G          +S 
Sbjct: 201 ANQVRLQVRIMEAQRSRIRQLGFNWSFLNGSGYVSSNPG-SLSSPLGANLTPGQTPGLSY 259

Query: 242 GG----DFSVK-GVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           GG    D S+  GV++  S F   L AL++   +R L E ++ A SG+ AS  SGG+   
Sbjct: 260 GGAGLSDSSISFGVVNANSVFRGFLEALKQEGLLRILVETSVVADSGRPASLLSGGE-FP 318

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PS 350
             V  + G  SV   ++GV L   P VL  G++ L I  E SE     NA  +     P+
Sbjct: 319 ILVPQALGTLSVEWKEFGVKLEAVPIVLGQGQVILEIAPEFSERDFA-NAAQLDNTTVPA 377

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R+A+T V +  G T+++ GL+        + +P L ++P +GA FR  R++  ETE+
Sbjct: 378 ITTRRANTQVRMKFGQTLMIGGLIATRYTAETDKVPFLGELPGIGAAFRRVRYDENETEL 437

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
            I  TP  V P+         D + V D     F
Sbjct: 438 IILVTPEYVAPL---------DPHQVPDGGPGQF 462


>gi|163857691|ref|YP_001631989.1| putative Flp pilus assembly secretin [Bordetella petrii DSM 12804]
 gi|163261419|emb|CAP43721.1| putative Flp pilus assembly secretin [Bordetella petrii]
          Length = 464

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 201/444 (45%), Gaps = 58/444 (13%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV-----HSPRTMYLFGKNVGQANVILI 102
           + IS+ +    +L +P     + V+DP  ADV V       P  + L GK+ G   V + 
Sbjct: 47  QDISLAVKGQQLLPLPGTPTRIAVADPDVADVKVLPAAAGRPAAVMLIGKSAGTTQVQVW 106

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             + +      + +   +   +  L+R        V++     V+ G   +    Q +V 
Sbjct: 107 ARNSRSPATWTVHVTGPV---QAELQRRGQAGGANVDVAGTHAVVSGHAPSALSHQNSVA 163

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
            +             +   K V+++        V ++V + EV R ++KQ+G   S+TG+
Sbjct: 164 AAAA-----------SVGDKNVVDVATAGSGGVVQVEVKVVEVSRSVMKQVGL--SMTGN 210

Query: 223 SSGPSKSFAADFGGKFVSEG----GDFSVKGVL--------DRFSFETVLHALERATAIR 270
           + G        FG +   +G    G  + +GVL        D   F   L  L+     R
Sbjct: 211 AGG------WGFGSRTSPDGFSTPGTLNPRGVLSDGFNLLFDSNHFGATLRMLQSNGMAR 264

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEPTL A+SGQSASF +GG+ +    S   G  +V    +G+ L  TPTVLS  RI L
Sbjct: 265 VLAEPTLVALSGQSASFLAGGE-IPIPESGGLGTQNVVFKPFGIGLTVTPTVLSRDRIAL 323

Query: 331 RIQTEVSE-------PVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           ++  E SE       P++ G  A  +P+ R R+ADT +EL  G + V++GL+    +   
Sbjct: 324 KVAPEASELDYVNGIPILNGETATLIPALRTRRADTMIELGDGESFVISGLVSRQTKASV 383

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVED--- 438
             +P L ++PI+GA FR   +++EE E+ I  TP LV+P+A    L  P +     D   
Sbjct: 384 NKVPFLGELPIIGAFFRGIEYSQEEHELVIVVTPRLVRPIARGVALPLPGERQERPDSIT 443

Query: 439 DAKAFFFNRVNKIYGPKEASEVEG 462
           +A  ++      + GP    +V G
Sbjct: 444 NAWGYY------LMGPAGGQQVPG 461


>gi|116626779|ref|YP_828935.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229941|gb|ABJ88650.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 471

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 189/393 (48%), Gaps = 44/393 (11%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           D+  V +S+P  AD VV SPR + +  K  G+A ++ +   G   +  +I + +D    +
Sbjct: 48  DITKVAISEPKIADAVVISPREVMVNAKGPGRATLV-VWETGLDPVRYEIAVTKDTTEWD 106

Query: 125 MTLRRFIADSNIRVEMVS--DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           M  +  I  + + + +    DT+VL G+V++  D++R   +++T              +K
Sbjct: 107 MFTKSMIDSAGVPIHITGSGDTIVLSGVVKSADDAKRLAGMAQT-------------RAK 153

Query: 183 KVMNLLNI---AGEDQVTLKVTIAEVRRDILKQIGFQ-----HSITGSSSGPSKSFAADF 234
            V+NLL     A   Q+ L+V  A + R  L QIGF          G+SS  ++ F++  
Sbjct: 154 TVINLLQAPPPAEPRQILLQVKFAAIDRVALTQIGFNLFSTNDKFIGASS--TEQFSSPR 211

Query: 235 GGKFVSEGGDFSVK--GVLDRFSFETVLH------ALERATAIRTLAEPTLTAISGQSAS 286
             +    G   +V    +L+ F+F   L+      ALE    ++ LAEP L  + G+ A+
Sbjct: 212 FSQLQPTGTGQTVNFSDLLNLFAFRPDLNIGATIKALEERNLLQILAEPNLLCLDGKEAT 271

Query: 287 FTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-- 338
           F +GG   Y T++++          +V    +GV L F PTV   G I L++Q EVS   
Sbjct: 272 FLAGGTFPYPTITTTPTGGATAPVITVQFKPFGVKLDFQPTVTPQGSIDLKVQPEVSSLD 331

Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
               + +    +P+   R+A+T + L  G +  +AGL+ + + +    +P L  +P+LG 
Sbjct: 332 YANAVTLQGFVIPALSQRRAETEIILKDGESFAIAGLIDNRVIETLSKVPGLGDLPVLGK 391

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           +FR+    +   E+ +  TP  VKP+   + ++
Sbjct: 392 IFRSRSTQKSADELLVVVTPHFVKPLTPEERAK 424


>gi|197117446|ref|YP_002137873.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
 gi|197086806|gb|ACH38077.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
          Length = 451

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 199/437 (45%), Gaps = 47/437 (10%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF-GKNVGQANVILIGHD 105
           G   ++ +N+ ++L +    + V ++D    DV     R   L  GK +G  N+I+   +
Sbjct: 29  GVPTTVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGSTNLIVWEEN 88

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
             +    D+ +  D   +E  +R +    +I V+   DTV+L G V      ++A E+++
Sbjct: 89  NDKPTFFDVRVVGDREAIESQIRDYAPKDDISVQYAQDTVILSGKVANEMTGKKAEEIAK 148

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------- 217
            +             S KV+N + +    QV L+V +A+V R  LK++G           
Sbjct: 149 AY-------------SAKVLNHITVDEPQQVLLQVKVAQVDRTSLKRLGLSAIVKGRTAE 195

Query: 218 ---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--------LDRFS---------FE 257
              ++ G+ SG S++  +    +F S  G+  V  +        L+ F+           
Sbjct: 196 GFTNLVGAPSGTSRNTEST-PTRFTSTEGNGIVGNIPGIGGFDPLNAFNVGVSYFPAGIG 254

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVV 315
            VL AL      + LAEP L   SG+  +F +G +  Y  + S+ GA+  S+     GV 
Sbjct: 255 AVLQALSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIVFETVGVK 314

Query: 316 LHFTPTVLSPGRIGLRIQ-TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           L F P VL  G I L+I   EVS     +     P    R   T VEL  G ++VLAGLL
Sbjct: 315 LKFKPQVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGESLVLAGLL 374

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR-PDDH 433
           +++  +    IPLL  IPILGALFR+S+ +  E ++    TP +VKP      ++ P D 
Sbjct: 375 QEEQIKNMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVKPTPAGVATKLPTDA 434

Query: 434 YSVEDDAKAFFFNRVNK 450
            + E++    +  R  K
Sbjct: 435 VTPEEEKGYDWIPRGGK 451


>gi|330816715|ref|YP_004360420.1| Type II and III secretion system protein [Burkholderia gladioli
           BSR3]
 gi|327369108|gb|AEA60464.1| Type II and III secretion system protein [Burkholderia gladioli
           BSR3]
          Length = 477

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 188/429 (43%), Gaps = 67/429 (15%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPRTMYLFGKNVGQANV 99
           D+ +G  ++I+ G N          +Q V V DP  AD+ ++     + L GK+ G  NV
Sbjct: 31  DLAVGAQRQIASGRN----------LQRVAVGDPAVADILIIKGGGGVMLIGKSAGTTNV 80

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           +L      +     + +    AH        + D+  RV+   DT V+ G   T++  QR
Sbjct: 81  MLWERGRSEPTVYTVHVTSGAAH------ALLNDATPRVDTYGDTTVISGSANTLEAHQR 134

Query: 160 AVELSETFLSQSGRNQYA-------------------------NSSSKKVMNLLNIAGED 194
           AV+++    +     Q +                         +S+   V++   I+G +
Sbjct: 135 AVDVANAAAAARAAAQQSSSAGGGQGKGQAVGRGGGNGGGGGGDSAGPNVVDASTISGRN 194

Query: 195 QVTLKVTIAEVRRDILKQIGFQ---------------HSITGSSSGPSKSFAADFGGKFV 239
            V + V + E  R  +KQ G                  S+  SS  PS            
Sbjct: 195 VVQVDVRVVEFSRSAIKQAGLNLFKSNNGFSFGSFAPSSLQSSSYNPSAGLTVTAVSPIT 254

Query: 240 SEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           S    F+ V G   R      L  LE+    R LA+PTL A+SGQSASF +GG+ +   V
Sbjct: 255 SA---FNLVVGSTSR-GIAGNLSVLEQNNLARILAQPTLVALSGQSASFLAGGE-IPVPV 309

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVR 354
             S G  S+    YG+ L  TPTVL P RI L++  E S+      I +N+  +P+   R
Sbjct: 310 PQSLGTISIEYKPYGIGLTVTPTVLGPNRIALKVAPEASQLDFLNAITINSITVPALTTR 369

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +ADTTVEL  G + V+ GL+  +       +P L  +PI+GA F++  + + + E+    
Sbjct: 370 RADTTVELGDGESYVIGGLVDRETTSNVSKVPFLGDLPIIGAFFKSLNYQQNDKELVFVV 429

Query: 415 TPFLVKPVA 423
           TP LV P+A
Sbjct: 430 TPHLVSPIA 438


>gi|154250526|ref|YP_001411350.1| type II and III secretion system protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154154476|gb|ABS61693.1| type II and III secretion system protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 461

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 188/393 (47%), Gaps = 37/393 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           ISIG  +++ L   VD   + +++P+  DV V S R + + G++ G  + + I   G   
Sbjct: 46  ISIGGQRILKLGQTVD--RIAIANPSIVDVKVISSRELRILGQSEGTTD-LDIWFAGGAS 102

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            +  +++  DI  L+  L R  A ++++       VVL G V +++  QRA E++ ++L 
Sbjct: 103 KSYYVVVGADITGLQSELARDPALADVKATETGKGVVLKGQVYSLEAQQRAREIARSYLG 162

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQ---HSITGSSS 224
                       K   ++L +A    V ++V  A V    LK +G  FQ   +S   ++ 
Sbjct: 163 ------------KDAGDMLTVADRRMVAVEVRFAAVSTSTLKALGLNFQSLDNSFQFAAI 210

Query: 225 GPSKSFAADFG---GKFVSEGGDFSVKGVLDRF------SFETVLHALERATAIRTLAEP 275
           GP+ S  + FG   G  +       +    + F      +   V+ AL  A   + LAEP
Sbjct: 211 GPNAS--SSFGYTPGAGLDPDTSLPLSQAFNLFLAWPGSNLLGVISALSSANLAQLLAEP 268

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQ 333
           TL   SG+ A F +GG+       S  G  +VT     +GV L    TVL   RI L++ 
Sbjct: 269 TLLVRSGEDADFLAGGEIPIPVPQSGVGNGTVTIEYKKFGVQLGVAATVLDNDRIVLKVS 328

Query: 334 TEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            EVSE      + V    +P+ R R   TT+EL  G + VLAGL+      +++ IP + 
Sbjct: 329 PEVSELDYTNALVVQGFRIPALRTRSTRTTIELGDGQSFVLAGLMYSTSGNIEDRIPGIG 388

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           ++P++G  F+ ++  RE  E+ I ATP LV P+
Sbjct: 389 ELPVIGTFFKRTQNARERQELIIVATPRLVSPM 421


>gi|167587316|ref|ZP_02379704.1| type II and III secretion system protein [Burkholderia ubonensis
           Bu]
          Length = 477

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 192/434 (44%), Gaps = 77/434 (17%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQA 97
           D+ +G  ++I+ G            +Q V V DP+ ADV++        + L  K  G  
Sbjct: 31  DLAVGSQRQIAAGRA----------LQRVAVGDPSVADVLIMKGSRAGAVLLVAKAPGST 80

Query: 98  NVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           NV+L   G D   + N++++     A L+         S    +   D  VL G   ++ 
Sbjct: 81  NVMLWERGRDEPMVWNVNVVDAAAHAVLD--------SSTPDAKAYGDVAVLSGSAASLD 132

Query: 156 DSQRAVELSETFLSQ----------------SGRNQYANSSS-------KKVMNLLNIAG 192
             +RA  + +    +                +G+     S +         V++   + G
Sbjct: 133 AHERAAAIGQHMADKGGAAAGGNWGAGDAGATGKRGGGASGTLGKAGKGGAVIDASTVGG 192

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQ------------------HSITGSSSGPSKSFAADF 234
            + V + V + E  R +LK+ G                     SITG+++    +F A  
Sbjct: 193 RNTVQVDVRVVEFSRSVLKEAGLNFFKQSNGFAFGAFTAGGLQSITGAAT---SAFQATA 249

Query: 235 GGKFVSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           G    S    F+ V     R  F   L  LE     R LA+PTL A+SGQSASF +GG+ 
Sbjct: 250 GIPVASA---FNLVANSAGRGIFAN-LSILEANNLARVLAQPTLVALSGQSASFLAGGE- 304

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMP 349
           +   V  + G+T++    YGV L  TPTVLSP RI L++  E S+      + +N+  +P
Sbjct: 305 IPVPVPQALGSTAIQWKQYGVGLTLTPTVLSPRRIALKVAPESSQLDFLHGVTINSVAVP 364

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   R+ADTTVEL  G + V+ GL+  +       +P+L  +PI+GA F+   + + + E
Sbjct: 365 AITTRRADTTVELGDGESFVIGGLIDRETMSNVNKVPVLGDLPIIGAFFKTLNYQQNDKE 424

Query: 410 IFIAATPFLVKPVA 423
           + I  TP LV P+A
Sbjct: 425 LVIIVTPHLVAPIA 438


>gi|83718419|ref|YP_443059.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|167582062|ref|ZP_02374936.1| type II/III secretion system protein [Burkholderia thailandensis
           TXDOH]
 gi|167620224|ref|ZP_02388855.1| type II/III secretion system protein [Burkholderia thailandensis
           Bt4]
 gi|257139289|ref|ZP_05587551.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|83652244|gb|ABC36307.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 441

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 127/425 (29%), Positives = 195/425 (45%), Gaps = 62/425 (14%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV--HSPRTMYL 89
           A AA +   ++  G  ++I++G            VQ V + DP+ ADVVV       + L
Sbjct: 20  ARAAEMGTIELATGAQRQIAVGRG----------VQRVAIGDPSVADVVVIKGGRGGVLL 69

Query: 90  FGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
             K  G  N+++   G D   +  +++             R  +   +  V+  + T V+
Sbjct: 70  VAKAAGSTNLMVWERGRDEPSVYTVNVA--------SGAARALLDGGSPSVKAYNGTAVV 121

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T+    RA+ + +    + G           V++   + G++ V + V + E  R
Sbjct: 122 SGSAATLDAHARALAVGKGMAGKDG----------GVVDASTVGGKNVVQVDVRVVEFSR 171

Query: 208 DILKQIG---FQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------VKG 249
            +LKQ G   F+ S  G + G   SFA   G   V+ GG  S               V G
Sbjct: 172 SVLKQAGLNFFKQS-NGFTFG---SFAPA-GLASVTGGGTSSMSVSANIPIASAFNLVVG 226

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              R  F   L  LE     R LA+PTL A+SGQSASF +GG+ +   V  S G  S+  
Sbjct: 227 SATRGLFAD-LSILEANNLARVLAQPTLVALSGQSASFLAGGE-IPVPVPQSLGTISIDW 284

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSG 365
             YGV L  TPTVLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G
Sbjct: 285 KPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDG 344

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            + V+ GL+  +     + +P L  +PI+G  F++  + + + E+ I  TP LV P+A +
Sbjct: 345 ESFVIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-K 403

Query: 426 DLSRP 430
           + S P
Sbjct: 404 NASLP 408


>gi|311107631|ref|YP_003980484.1| type II and III secretion system family protein 2 [Achromobacter
           xylosoxidans A8]
 gi|310762320|gb|ADP17769.1| bacterial type II and III secretion system family protein 2
           [Achromobacter xylosoxidans A8]
          Length = 453

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/247 (36%), Positives = 132/247 (53%), Gaps = 17/247 (6%)

Query: 207 RDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
           R ++K  G   + + G  SG S +  A  GG   S    FS+    D  +F   L  L+ 
Sbjct: 193 RSVMKAAGISFTASNGPWSGGSSTMPASLGGALAS---GFSL--FYDSNNFSARLRLLQT 247

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R LAEPTL A++GQSASF +GG+ L    +   G  +VT   +G+ L  TPTVLS 
Sbjct: 248 NGMARVLAEPTLVALTGQSASFLAGGE-LPIPQAGGLGTVNVTFKPFGIGLTVTPTVLSR 306

Query: 326 GRIGLRIQTEVSE----PVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            RI L++  E SE      I +N        +P+ R R+ADTTVEL  G + V++GL+  
Sbjct: 307 DRISLKVAPEASELDYTNGIAINTSADTSTIIPALRTRRADTTVELGDGESFVISGLVSR 366

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
             + +   +P+L  +PI+G+ FR+  +++E+TE+ I  TP LV+P+A R ++ P      
Sbjct: 367 QTKAMVNKVPMLGDLPIIGSFFRSVDYSQEDTELVIVVTPRLVRPIA-RGVALPLPGAKQ 425

Query: 437 EDDAKAF 443
           E    AF
Sbjct: 426 EQTDTAF 432


>gi|283779187|ref|YP_003369942.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283437640|gb|ADB16082.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 940

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 189/429 (44%), Gaps = 63/429 (14%)

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD-GKQMLNLDILIERDIAH 122
           VD+    V D +  DVV  +PR + + GK+ G  +V     D   Q L   + +E D   
Sbjct: 487 VDIYRTAVVDESICDVVQFTPREVSIIGKSQGATHVTFWFDDPNSQPLTWLVKVEPDAEE 546

Query: 123 ----------LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS- 171
                     L+  +     DS I + +V+  +++ G  +   DS+ A ++     +Q+ 
Sbjct: 547 VKKEEQTYKLLQDVINEMFPDSKIELVVVASKLIVRGQAK---DSEEAAQIISIIRAQTG 603

Query: 172 -----------------------GRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVR 206
                                    +   NSS  +  V+N+L + G  QV LKV IAE+ 
Sbjct: 604 GQGQNGLGGGQNGLGEGAAADVLSDSATGNSSRSRLQVINMLRVPGVHQVALKVKIAELN 663

Query: 207 R--------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           R        D+   I F  S  GSS    +S     GG+  +      +   +D    + 
Sbjct: 664 RTAARGFGVDLKTDISFSESEKGSSLL-LESILNMAGGQAPA------LLTQIDGDEIQI 716

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVL 316
            +  L++   ++ LAEPTL  +SG+ A+F +GG+    TV  S G  +VTT    +G ++
Sbjct: 717 GIRYLQQHGVVKLLAEPTLVTLSGRPATFIAGGEFAVPTVVGSAGLNAVTTDFRAFGAII 776

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            F PTV+   RI L +  E S+    +N G  P  RVR A TTVE+  G T+ +AGLL+D
Sbjct: 777 SFMPTVVDKDRIRLEVAPEFSQINQDLNVGGTPGLRVRAATTTVEMREGQTLAIAGLLED 836

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           ++     G      +P L  +F      R ETE+ I  +P LV P+   ++  P   + V
Sbjct: 837 NMNGTTIG-----DLPFLAKIFGRRGMQRNETELLILVSPELVHPMEPEEVP-PLPGFDV 890

Query: 437 EDDAKAFFF 445
            +     FF
Sbjct: 891 TEPTNGQFF 899


>gi|283781350|ref|YP_003372105.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283439803|gb|ADB18245.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 940

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 198/454 (43%), Gaps = 79/454 (17%)

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD-GKQMLNLDILIERDIAH 122
           VD+    V D +  DVV  +PR + + GK+ G  +V     D   Q L   + +E D   
Sbjct: 487 VDIYRTAVVDESICDVVQFTPREVSIIGKSQGATHVTFWFDDPNSQPLTWLVKVEPDAEE 546

Query: 123 ----------LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS- 171
                     L+  +     DS I + +V+  +++ G  +   DS+ A ++     +Q+ 
Sbjct: 547 VKKEEQTYKLLQDVINEMFPDSKIELVVVASKLIVRGQAK---DSEEAAQIISIIRAQTG 603

Query: 172 -----------------------GRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVR 206
                                    +   NSS  +  V+N+L + G  QV LKV IAE+ 
Sbjct: 604 GQGQNGLGGGQNGLGEGAAADVLSDSATGNSSRSRLQVINMLRVPGVHQVALKVKIAELN 663

Query: 207 R--------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           R        D+   I F  S  GSS    +S     GG+  +      +   +D    + 
Sbjct: 664 RTAARGFGVDLKTDISFSESEKGSSLL-LESILNMAGGQAPA------LLTQIDGDEIQI 716

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVL 316
            +  L++   ++ LAEPTL  +SG+ A+F +GG+    TV  S G  +VTT    +G ++
Sbjct: 717 GIRYLQQHGVVKLLAEPTLVTLSGRPATFIAGGEFAVPTVVGSAGLNAVTTDFRAFGAII 776

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            F PTV+   RI L +  E S+    +N G  P  RVR A TTVE+  G T+ +AGLL+D
Sbjct: 777 SFMPTVVDKDRIRLEVAPEFSQINQDLNVGGTPGLRVRAATTTVEMREGQTLAIAGLLED 836

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR--------DLS 428
           ++     G      +P L  +F      R ETE+ I  +P LV P+           D++
Sbjct: 837 NMNGTTIG-----DLPFLAKIFGRRGMQRNETELLILVSPELVHPMEPEEVPPLPGFDVT 891

Query: 429 RPDD-----HYSVE----DDAKAFFFNRVNKIYG 453
            P +     H  +E     D ++  + R+ K YG
Sbjct: 892 EPTNGQFFLHGDLEGNPTQDYRSTVWPRLRKRYG 925


>gi|170701752|ref|ZP_02892688.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133335|gb|EDT01727.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
          Length = 444

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 195/423 (46%), Gaps = 73/423 (17%)

Query: 34  AAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV----HSPRTMY 88
           AA  N S D+ +G  ++I+ G            +Q + V DP   DV+V    H+  ++ 
Sbjct: 23  AAGTNASIDLAVGSQRQIAAGRT----------LQRIAVGDPAVVDVLVMKGSHA-GSVL 71

Query: 89  LFGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
           L  K  G  NV+L   G D   + N++++     A L+ T          +V+      V
Sbjct: 72  LVAKAPGSTNVLLWERGRDEPTVWNVNVVDAAAQAALDGT--------GPKVKAYGGAAV 123

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L G   ++   +RAV + +    + G           V++   +     V + V + E  
Sbjct: 124 LSGSSASLDAHERAVAVGKRMGGKDG----------TVIDASTVGNRSVVQVDVRVVEFS 173

Query: 207 RDILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV- 247
           R +LK+ G                     S+TG   G + +FAA  GG  ++   +  V 
Sbjct: 174 RSVLKEAGLNFFKQSNGFAFGAFSPGGLQSVTG---GATSAFAAT-GGIPIASAFNLVVN 229

Query: 248 ---KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
              +G+    S       LE     R LA+PTL A+SGQSASF +GG+ +   V  + G+
Sbjct: 230 SAGRGIFGNISI------LEANNLARVLAQPTLVALSGQSASFLAGGE-IPVPVPQALGS 282

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360
           T++    YGV L  TPTVLS  RI L++  E S+      + +N+  +P+   R+ADTTV
Sbjct: 283 TAIDWKQYGVGLTLTPTVLSQRRIALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTV 342

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL  G + V+ GL+  +       +P+L  +PI+GA F++  + + + E+ I  TP LV 
Sbjct: 343 ELGDGESFVIGGLIDRETMSNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVA 402

Query: 421 PVA 423
           P+A
Sbjct: 403 PIA 405


>gi|170696786|ref|ZP_02887895.1| type II and III secretion system protein [Burkholderia graminis
           C4D1M]
 gi|170138302|gb|EDT06521.1| type II and III secretion system protein [Burkholderia graminis
           C4D1M]
          Length = 479

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 185/412 (44%), Gaps = 75/412 (18%)

Query: 66  VQDVLVSDPTKADV-VVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           ++ V + DP+ ADV ++   +T  + L GK+ G  NV+L        L+  + +    A 
Sbjct: 50  LRRVAIGDPSVADVLIIKGDKTGGVLLIGKSPGTTNVMLWEQGKDAPLSYVVNVSSPAA- 108

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ------------ 170
                +  +      V+++ DT ++ G   T++   RA   +E    Q            
Sbjct: 109 -----KSLLGPGTPSVKVLGDTALITGAAPTMEAHHRAAAAAEIEAHQRAALGGAGGIGT 163

Query: 171 ---------SGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--- 216
                     G N  ANS+S   ++ +   IA    V + V + E  R +LKQ+G     
Sbjct: 164 ADGAKSGANGGPNGSANSASNNAQIYDTSTIATRSVVQVDVRVVEFSRTVLKQVGLNILK 223

Query: 217 ------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHA 262
                        ++T ++ GP+ SF+              SV  +   F+  F +  H 
Sbjct: 224 QNNGFTFGSFAPSALTSATYGPTPSFS--------------SVAPISSAFNLVFNSATHG 269

Query: 263 L-------ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           L       E     R LAEPTL A+SGQSASF +GG+ +   +    G TS+    YGV 
Sbjct: 270 LFADLSLMESNNLARILAEPTLVALSGQSASFLAGGE-IPVPIPQGLGTTSIEYKPYGVG 328

Query: 316 LHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           L  TPTVLSP RI L++  E S+      + ++   +P+   R+ DTTVEL  G + V+ 
Sbjct: 329 LTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAITTRRTDTTVELGDGESFVIG 388

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           GL+  +       +PLL  +P++GA F+   + + + E+ I  TP LV P+A
Sbjct: 389 GLIDRETISNVAKVPLLGDLPVIGAFFKQLNYQQNDKELVIIVTPHLVSPLA 440


>gi|323525746|ref|YP_004227899.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
 gi|323382748|gb|ADX54839.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
          Length = 474

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 176/403 (43%), Gaps = 59/403 (14%)

Query: 69  VLVSDPTKADV-VVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           V + DP+ ADV V+   RT  + L GK+ G  NV+L        L+  + +    A    
Sbjct: 44  VAIGDPSVADVLVIRGDRTGGVLLIGKSPGSTNVMLWEQGKDAPLSYVVNVSSPAA---- 99

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR------------ 173
             +  +      V+++ DT ++ G   T++  QRAV  +     Q               
Sbjct: 100 --KSLLGPDTPSVKVLGDTALISGSAPTMEAHQRAVAAAGIEAHQRATLGSAAKGGTGGK 157

Query: 174 ---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-- 216
                                S  ++ +   +A    V + V + E  R +LKQ+G    
Sbjct: 158 AGVASALAGADAANGGASGGESGTQIYDSSTVATRSVVQVDVRVVEFSRTVLKQVGLNIL 217

Query: 217 ---HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHAL-------E 264
              +  T  S  PS   +A +G          SV  +   F+  F +  H L       E
Sbjct: 218 KQNNGFTFGSFAPSALSSATYGATPTFN----SVAPISSAFNLVFNSATHGLFADLSLME 273

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                R LAEPTL A+SGQSASF +GG+ +   +    G TS+    YGV L  TPTVLS
Sbjct: 274 SNNLARILAEPTLVALSGQSASFLAGGE-IPVPIPQGLGTTSIEYKPYGVGLTLTPTVLS 332

Query: 325 PGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           P RI L++  E S+      + ++   +P+   R+ DTTVEL  G + V+ GL+  +   
Sbjct: 333 PQRIALKVAPEASQLDFANAVTISGVSVPAITTRRTDTTVELGDGESFVIGGLIDRETIS 392

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
               +PLL  +P++GA F+   + + + E+ I  TP LV P+A
Sbjct: 393 NVAKVPLLGDLPVIGAFFKQLNYQQNDKELVIIVTPHLVSPLA 435


>gi|115351456|ref|YP_773295.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
 gi|115281444|gb|ABI86961.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
          Length = 444

 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 195/423 (46%), Gaps = 73/423 (17%)

Query: 34  AAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV----HSPRTMY 88
           AA  N S D+ +G  ++++ G            +Q + V DP   DV+V    H+  ++ 
Sbjct: 23  AAGTNASIDLAVGSQRQVAAGRT----------LQRIAVGDPAVVDVLVMKGSHA-GSVL 71

Query: 89  LFGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
           L  K  G  NV+L   G D   + N++++     A L+         S  +V+      V
Sbjct: 72  LVAKAPGSTNVLLWERGRDEPTVWNVNVVDAAAQAALD--------GSAPKVKGYGGAAV 123

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L G   ++   +RAV + +    + G           V++   +     V + V + E  
Sbjct: 124 LSGSSASLDAHERAVAVGKRMGGKDG----------TVIDASTVGNRSVVQVDVRVVEFS 173

Query: 207 RDILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV- 247
           R +LK+ G                     S+TG   G + +FAA  GG  ++   +  V 
Sbjct: 174 RSVLKEAGLNFFKQSNGFAFGAFSPGGLQSVTG---GATSAFAAT-GGIPIASAFNLVVN 229

Query: 248 ---KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
              +G+    S       LE     R LA+PTL A+SGQSASF +GG+ +   V  + G+
Sbjct: 230 SAGRGIFGNISI------LEANNLARVLAQPTLVALSGQSASFLAGGE-IPVPVPQALGS 282

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360
           T++    YGV L  TPTVLS  RI L++  E S+      + +N+  +P+   R+ADTTV
Sbjct: 283 TAIDWKQYGVGLTLTPTVLSQHRIALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTV 342

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL  G + V+ GL+  +       +P+L  +PI+GA F++  + + + E+ I  TP LV 
Sbjct: 343 ELGDGESFVIGGLIDRETMSNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVA 402

Query: 421 PVA 423
           P+A
Sbjct: 403 PIA 405


>gi|293606490|ref|ZP_06688848.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292815113|gb|EFF74236.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 458

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/241 (36%), Positives = 132/241 (54%), Gaps = 23/241 (9%)

Query: 207 RDILKQIGFQHSIT-----GSSSGPSKSFAADFG---GKFVSEGGDFSVKGVLDRFSFET 258
           R ++KQ G   + +     G+S+       A  G   G  ++ G  FS+    D  +F  
Sbjct: 190 RSVMKQAGINFAASNGPWAGTSATAPSGLGAPLGFTPGGIIASG--FSL--FYDSNNFSA 245

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            L  L+     R LAEPTL A++GQSASF +GG+ L    +   G T+VT   +G+ L  
Sbjct: 246 RLRLLQSNGMARVLAEPTLVALTGQSASFLAGGE-LPIPEAGGLGTTTVTFKPFGIGLTV 304

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGD-----MPSYRVRKADTTVELPSGGTIV 369
           TPTVLS  RI L++  E SE      I +N        +P+ R R+ADTTVEL  G + V
Sbjct: 305 TPTVLSRDRISLKVAPEASELDYSNGIAINTSADTSTIIPALRTRRADTTVELGDGESFV 364

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++GL+    + +   +P+L  +PI+GA FR+  +++E+TE+ I  TP LV+P+A R ++ 
Sbjct: 365 ISGLVSRQTKAMVNKVPMLGDLPIIGAFFRSVDYSQEDTELVIVVTPRLVRPIA-RGVTL 423

Query: 430 P 430
           P
Sbjct: 424 P 424


>gi|322419944|ref|YP_004199167.1| type II and III secretion system protein [Geobacter sp. M18]
 gi|320126331|gb|ADW13891.1| type II and III secretion system protein [Geobacter sp. M18]
          Length = 493

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 166/371 (44%), Gaps = 49/371 (13%)

Query: 81  VHSPRTMYLFGKNVGQANVILI----GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           + S   + L G  +G  ++I+     G +       D+ +  D   +E  L+       I
Sbjct: 116 ILSEYVLKLDGTAIGSTSMIIWTKGEGDERPAPTFFDLKVTGDREAIENQLKEMAPKETI 175

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            V+  SDTVVL G V   Q   +A E+++ F             + KV+N + +    QV
Sbjct: 176 VVQYASDTVVLSGNVANDQTKTKAFEIAKAF-------------APKVINNMTVNVPQQV 222

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------GDFSVKG 249
            L+V +A+V +  LK++G    I GS++    +  A   G     G       GDF    
Sbjct: 223 LLQVKVAQVDKSSLKKLGISFLIKGSTAEGFSNLVAGPDGAVTGIGTGAATGIGDFPS-- 280

Query: 250 VLDRFS---------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            LD F             VL AL      + LAEP L   S Q   F +G +     + S
Sbjct: 281 -LDSFQAGVSYFPAGIGAVLSALSSKGLAKVLAEPNLLVRSSQEGYFLAGSKIPIAILES 339

Query: 301 STG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ-TEVSE-----PVIGVNAGDMPSYR 352
           + G   TS+     G+ L F P VL  G I L+I   EVS      PV G      P   
Sbjct: 340 TGGQATTSIRYEPVGIKLKFKPEVLENGMISLKINPAEVSSIQGFLPVNG-----YPIID 394

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  +T+VEL  G +++LAGLL++D  +    IPLL  IPILGALFR+S  + +E E+  
Sbjct: 395 TRTVETSVELKDGESLILAGLLQEDEIKNMSKIPLLGDIPILGALFRSSSSDIKEKELVF 454

Query: 413 AATPFLVKPVA 423
             TP +V+P A
Sbjct: 455 FITPKIVQPTA 465


>gi|317403496|gb|EFV84000.1| hypothetical protein HMPREF0005_03138 [Achromobacter xylosoxidans
           C54]
          Length = 458

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 132/255 (51%), Gaps = 25/255 (9%)

Query: 207 RDILKQIGFQHSITGSSSGPSKS--------FAADFG-GKFVSEGGDFSVKGVLDRFSFE 257
           R ++KQ G   +     SGP  S        F A  G  K  +    FS+    D   F 
Sbjct: 190 RSVMKQAGISFA---GRSGPWGSTNSITPDGFPAPLGFNKGAALASGFSL--FYDSNDFS 244

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
             L  L+     R LAEPTL A++GQSASF +GG+ L    +   G T+VT   +G+ L 
Sbjct: 245 ARLRLLQNNGMARVLAEPTLVALTGQSASFLAGGE-LPIPEAGGLGTTTVTFKPFGIGLT 303

Query: 318 FTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD-----MPSYRVRKADTTVELPSGGTI 368
            TPTVLS  RI L++  E SE      I V+ G      +P+ R R+ADTTVEL  G + 
Sbjct: 304 VTPTVLSRERIALKVAPEASELDYSNAIAVSNGTNSTTLIPALRTRRADTTVELGDGESF 363

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           V++GL+    + L   +P+L  +PI+G+ FR+  + +E+TE+ I  TP LV+P+A R ++
Sbjct: 364 VVSGLVSRQTRALVNKVPMLGDLPIIGSFFRSVDYTQEDTELVIVVTPRLVRPIA-RGVT 422

Query: 429 RPDDHYSVEDDAKAF 443
            P      E    AF
Sbjct: 423 LPLPGAKQEAADTAF 437


>gi|190574779|ref|YP_001972624.1| putative exported fimbriae assembly protein [Stenotrophomonas
           maltophilia K279a]
 gi|190012701|emb|CAQ46329.1| putative exported fimbriae assembly protein [Stenotrophomonas
           maltophilia K279a]
          Length = 451

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 129/435 (29%), Positives = 204/435 (46%), Gaps = 66/435 (15%)

Query: 62  VPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           +P D++ V ++DP  AD+V +   R   L GK  G   ++L      +   L + ++  +
Sbjct: 46  LPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHRKQAEPQRLQVRVQSAV 105

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS-ETFLSQSGRNQYANS 179
                   +  AD+             +G+V T QD+Q  ++ S ++ LS     + A  
Sbjct: 106 --------QGAADAGS-----------NGLVFTQQDNQGLLQGSTDSVLSHMQEQKTAAM 146

Query: 180 SSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADF 234
           +  K   + +   ++    V ++V + E  +  LKQIG  FQ+         + SFA  F
Sbjct: 147 ALGKDGLLADASTVSSGGVVQVEVKVVEFNKTALKQIGISFQNR--------NGSFAYGF 198

Query: 235 ---GGKF---------VSEG--GDFSVKGVLDRF-----SFETVLHA----LERATAIRT 271
              GG+          + EG  G+ +   +   F     S + + +A    L+     R 
Sbjct: 199 ARPGGQLPGNTGILPGMKEGNSGNEAESPISSAFRLVFGSTKGLWNADVDLLQSNGMARV 258

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEPTL A+SGQSASF +GG+ L        G T++T   +G+ L  TPTVL+P RI L+
Sbjct: 259 LAEPTLVALSGQSASFLAGGE-LPILEPQGLGTTTITYKPFGIGLTVTPTVLAPNRIALK 317

Query: 332 IQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  E S+      I +N   +PS   R+ADTTVEL  G + V+ GL+  ++      IPL
Sbjct: 318 VAPEASDLDYSNAIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSNVGKIPL 377

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  +PI+G+ FRN  + R++ E+ I  TP LV+P+A R+   P      E +AK      
Sbjct: 378 LGDLPIIGSFFRNFDYKRQDKELVIIVTPRLVQPLA-RNTELP---LPGEREAKPHMPEW 433

Query: 448 VNKIYGPKEASEVEG 462
              + GP     V G
Sbjct: 434 GAWLLGPISQDPVPG 448


>gi|194366097|ref|YP_002028707.1| type II and III secretion system protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194348901|gb|ACF52024.1| type II and III secretion system protein [Stenotrophomonas
           maltophilia R551-3]
          Length = 452

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 128/428 (29%), Positives = 198/428 (46%), Gaps = 52/428 (12%)

Query: 62  VPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           +P D++ V ++DP  AD+V +   R   L GK  G   ++L      +   + + ++   
Sbjct: 47  LPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHRKQAEPQRMQVRVQS-- 104

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS-ETFLSQSGRNQYANS 179
                            V+  +DT    G+V T QD+Q  ++ S ++ LS     + A  
Sbjct: 105 ----------------AVQGAADTGS-GGLVFTQQDNQGLLQGSTDSVLSHMQEQRTAAM 147

Query: 180 SSKKVMNLLN---IAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSG---PSKSFA 231
           +  K   L +   I+    V ++V + E  +  LKQIG  FQ+     + G   P     
Sbjct: 148 ALGKDGTLADTSTISSGGVVQVEVKVVEFNKTALKQIGISFQNRNGNFAYGFARPGGQLP 207

Query: 232 ADFG---GKFVSEGGDFSVKGVLDRF-----SFETVLHA----LERATAIRTLAEPTLTA 279
            + G   G      G+ +   +   F     S + + +A    L+     R LAEPTL A
Sbjct: 208 GNTGILPGMKEGNSGNEAESPISSAFRLVFGSTKGLWNADVDLLQSNGMARVLAEPTLVA 267

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
           +SGQSASF +GG+ L        G T++T   +G+ L  TPTVL+P RI L++  E S+ 
Sbjct: 268 LSGQSASFLAGGE-LPILEPQGLGTTTITYKPFGIGLTVTPTVLAPNRIALKVAPEASDL 326

Query: 339 ---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                I +N   +PS   R+ADTTVEL  G + V+ GL+  ++      IPLL  +PI+G
Sbjct: 327 DYSNAIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSSVGKIPLLGDLPIIG 386

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
           + FRN  + R++ E+ I  TP LVKP+A   +L  P D      +AK         + GP
Sbjct: 387 SFFRNFDYKRQDKELVIIVTPRLVKPLARNTELPLPGDR-----EAKPHMPEWGAWLLGP 441

Query: 455 KEASEVEG 462
                V G
Sbjct: 442 ISQDPVPG 449


>gi|307944371|ref|ZP_07659712.1| putative type III secretion component [Roseibium sp. TrichSKD4]
 gi|307772717|gb|EFO31937.1| putative type III secretion component [Roseibium sp. TrichSKD4]
          Length = 411

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 179/385 (46%), Gaps = 24/385 (6%)

Query: 58  IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
           I+L+    V  V +     A+V   + + +Y+ G   G  N++++ +D   + +  I++ 
Sbjct: 31  ILLRFNEPVASVFIGSNEIAEVQAVNEKAIYVSGLTAGTTNLLVMNYDNDIIRSHAIVVH 90

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
                    L   I + ++ V+   +T ++ G V  I D+    E+ +T L + GR    
Sbjct: 91  PVNNETSYLLENLIPNGDVTVQSSGNTSIIRGNVDNIDDADDIREV-KTRLEEQGR---- 145

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------SSSGPSKS 229
                KV++    +   QV+LKV I E+ R  L ++GF  S           + SG ++ 
Sbjct: 146 -----KVIDKTTTSTPVQVSLKVRIVELYRADLIKLGFDVSSVSSGSVFKVVTGSGIAQD 200

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           F +   G  V       + G  + F+   +L  LE+   I+ LAEP LT ++G+ A+F S
Sbjct: 201 FMSTLIGS-VEGQTRVGISGANNSFNVNAMLDLLEKRGYIQILAEPRLTTVTGEKATFRS 259

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD 347
           GG+    +V+   G  +    + G+ + F P +L   +I + I +E+   +P   VN+  
Sbjct: 260 GGEFAV-SVNQGNGVFTAEYKETGISIDFIPEILPGDKISIDISSEIKFVDPQSVVNSA- 317

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+  VR   T  ++ SG T  LAGL +      K G P LSKIP+ G L   +  +REE
Sbjct: 318 -PALLVRSVQTNAQVASGQTFALAGLYQLTQSSSKSGPPYLSKIPVFGNLLSKTNESREE 376

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDD 432
            E+    TP+LV      +  +P D
Sbjct: 377 RELIFFITPYLVHSSVPIEKKQPTD 401


>gi|167911136|ref|ZP_02498227.1| type II/III secretion system protein [Burkholderia pseudomallei
           112]
          Length = 432

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 182/390 (46%), Gaps = 50/390 (12%)

Query: 66  VQDVLVSDPTKADV-VVHSPRT-MYLFGKNVGQANVILI--GHDGKQMLNLDILIERDIA 121
           VQ V ++DP  ADV V+   R  + L  K  G  ++++   G D      ++++      
Sbjct: 35  VQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLMVWERGRDEPAAYTVNVV------ 88

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
                 R  +   +  V+  + T V+ G   T+    RA+ + +    + G         
Sbjct: 89  --SGAARALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDG--------- 137

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFV 239
             V+++  + G++ V + V + E  R +LKQ G  F     G + G   SFA   G   V
Sbjct: 138 -GVLDVSTVGGKNVVQVDVRVVEFSRSVLKQAGLNFFKQNNGFTFG---SFAPA-GLASV 192

Query: 240 SEGGDFS---------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           + GG  S               V G   R  F   L  LE     R LA+PTL A+SGQS
Sbjct: 193 TGGGTSSMSVSANIPIASAFNLVVGSATRGLFAD-LSILEANNLARVLAQPTLVALSGQS 251

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340
           ASF +GG+ +   V  S G  S+    YGV L  TPTVLSP RI L++  E S+      
Sbjct: 252 ASFLAGGE-IPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHS 310

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           I +N   +P+   R+ADTTVEL  G + V+ GL+  +     + +P L  +PI+G  F++
Sbjct: 311 ITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRETTSNVDKVPFLGDLPIIGTFFKH 370

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRP 430
             + + + E+ I  TP LV P+A ++ S P
Sbjct: 371 LSYQQNDKELVIIVTPHLVAPIA-KNASLP 399


>gi|297568753|ref|YP_003690097.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924668|gb|ADH85478.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 406

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 132/261 (50%), Gaps = 23/261 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQ-----HSITGSSSGPS-----------KSFAADFGGKF 238
           QV   + + EV R  L+Q G        SIT +++ P               A+D G  F
Sbjct: 117 QVRADIRVVEVSRRALRQSGVNLLKDSDSITVATTAPGVLTGIDNQAAGLPLASDSG--F 174

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           V     F++     +     ++  LE      TLAEP+LT +SG++ASF +GG+      
Sbjct: 175 VPLAQAFNLVAGDAKQRLLGIISLLESNGFAYTLAEPSLTVMSGKTASFLAGGEVPIPVS 234

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVR 354
             ++G+ S+   D+GV L  TPTVL P RI + +  EVSE      +      +P +RVR
Sbjct: 235 HGTSGSVSIEYRDFGVRLQLTPTVLDPRRITIEVSPEVSELDFSAAVSTAGVTVPGFRVR 294

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +TTV+L  G + V++GL+ ++     E +P L  +PILGA F+++R    + E+ +  
Sbjct: 295 RTETTVQLADGESFVISGLISNENASTVEKVPFLGSLPILGAFFKSTRLQSNDKELIMVV 354

Query: 415 TPFLVKPVAM-RDLSRPDDHY 434
           TP LV+P+     +  P +HY
Sbjct: 355 TPHLVRPLERGAQVPLPGEHY 375


>gi|149173675|ref|ZP_01852304.1| probable type II secretion system protein [Planctomyces maris DSM
           8797]
 gi|148847205|gb|EDL61539.1| probable type II secretion system protein [Planctomyces maris DSM
           8797]
          Length = 744

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 139/257 (54%), Gaps = 20/257 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
           G N YA+S    ++N+L I GE QV + VTIA++ R +++Q+G   S+            
Sbjct: 311 GNNGYASSF---IVNMLEIPGEFQVMIHVTIAQMNRTMMRQLGVDLSVL----------- 356

Query: 232 ADFGGKFV--SEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
            D G +F+  S GG   ++ G+ +      +++AL +    + +A PTLT +SG SASF 
Sbjct: 357 FDGGRQFLGSSMGGVPSTLTGIFEAGEVNVLINALAQNGTTKIMARPTLTVLSGHSASFL 416

Query: 289 SGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
           +GG+    T+    GA  TS T   +G  +  TP V+    I +RI  E S+   G +  
Sbjct: 417 AGGEFAVPTIVGVGGAQGTSTTFRGFGTSIVVTPIVIDKDLIRMRIVPEYSQINDGNSVQ 476

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNR 405
            +P    R+A TTVEL  G TIVLAGL   D       IP L +IP++G+ LF + + ++
Sbjct: 477 GIPGLNSRRAQTTVELREGQTIVLAGLFGHDSSTGVTRIPWLGEIPLVGSYLFSSKQSSQ 536

Query: 406 EETEIFIAATPFLVKPV 422
            E+E+ I  TP LV+P+
Sbjct: 537 GESELLITVTPQLVRPM 553


>gi|332284569|ref|YP_004416480.1| putative outer membrane protein [Pusillimonas sp. T7-7]
 gi|330428522|gb|AEC19856.1| putative outer membrane protein [Pusillimonas sp. T7-7]
          Length = 474

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 183/384 (47%), Gaps = 32/384 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ + +V +L +P DV  V V D    + V    + + +F ++ G   + +   DG++ 
Sbjct: 28  LNLQVGEVKVLGIP-DVARVAVGDGHIINAVATDEKEVIVFARHEGSTALQIWSADGQRW 86

Query: 110 LNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
                +    +  ++  LR  +    + ++  V D +V+ G   +  D +R  EL++ + 
Sbjct: 87  QYQIEVAPEGLRQIQQELRSVLERIPHAQLSAVGDKLVIEGDDLSDGDRERIAELAKHY- 145

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                         ++++     G D+ V L V + EV R  L+++G + + T +  G S
Sbjct: 146 -------------PQLLDFTGQVGWDRMVLLDVQVVEVPRIQLQELGLRWN-TATDGGLS 191

Query: 228 KSFAADFGGKFVSEGGDFSVKGV-------LDRFSFETVLHA-----LERATAIRTLAEP 275
              A D G K + +    SV  +          F    +L A      ++ TA+  LA+P
Sbjct: 192 AGLAWDGGSKRLDDRPSESVMPIGFPATMAAGYFGVNALLSARINAMAQKGTAV-VLAQP 250

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L A SG +A F +GG+  Y TV ++ G T+     YGV L  TP +   G +  RI+ E
Sbjct: 251 QLLARSGSTAEFLAGGEVPYSTVDAN-GNTNTAFKPYGVSLRITPQIERNGAVRSRIEVE 309

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           VS     ++  + PS + R+A T   + SG T+VLAG L  +     + +P L  IPILG
Sbjct: 310 VSSVDNALSVPNGPSLKTRRAATEFNVRSGQTLVLAGFLSREATHNVDKVPGLGDIPILG 369

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LF++SRF R ETE+ I  TP LV
Sbjct: 370 ELFKSSRFQRHETELAIFVTPVLV 393


>gi|116620532|ref|YP_822688.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223694|gb|ABJ82403.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 529

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 185/401 (46%), Gaps = 35/401 (8%)

Query: 41  DVEIGKGK-KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           DV+   G  K+ + + K +I+  P+++Q + V++    + V  +P+ + + GK  G+  +
Sbjct: 53  DVQPAPGPGKLMVTVGKSLIIDSPMNIQRISVANGELIEAVAVNPKEVLINGKAAGETTL 112

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMT---LRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
           I+    G ++L  D+ +      L++    L R   D  I V   ++   + G V+ +  
Sbjct: 113 IIWQQGGNRLL-YDLTVRISPVRLDVVRQQLARDFPDDEINVTYDNEVAFVRGRVKDLSA 171

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTIAEVRRDILKQI 213
           + R + ++              +S  K +NLL +     E Q+ L V  A V R     +
Sbjct: 172 ADRVMAIA--------------ASLGKTVNLLRVDVPPVETQILLHVRFANVDRGASTDL 217

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE------TVLHALERAT 267
           G   + TG+ +  +      +    V   G  S+   L+   F         + ALE   
Sbjct: 218 GVSLA-TGAFNQSTAITTGQYPPPTVGTDGRVSISDALNILLFRKDINLGATIKALESKR 276

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSP 325
            + TLAEP + AI+G+ A+F +GG+     V      GA S+T  ++G+ ++F P +   
Sbjct: 277 MLETLAEPNVMAINGKPAAFIAGGEFPVPMVQGGGLAGAVSITFREFGIRINFLPKITPR 336

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           G I L +  EVS       +      +P+   R+  T VEL +G + V+AGLL +   + 
Sbjct: 337 GTIQLAVAPEVSSLDYSNAVTFQGYTIPALATRRIQTEVELETGQSFVIAGLLDNRTTET 396

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
              IP LS IP+LG LF++    +  TE+ +  TP +V+P+
Sbjct: 397 LNKIPGLSNIPLLGKLFQSRAVAKNNTELMVIVTPEIVRPI 437


>gi|53719509|ref|YP_108495.1| putative exported fimbriae assembly protein [Burkholderia
           pseudomallei K96243]
 gi|76808601|ref|YP_333341.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710b]
 gi|121598954|ref|YP_993098.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|124383520|ref|YP_001026125.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|126440403|ref|YP_001058807.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|134282202|ref|ZP_01768907.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|167002482|ref|ZP_02268272.1| type II/III secretion system protein [Burkholderia mallei PRL-20]
 gi|167719788|ref|ZP_02403024.1| type II/III secretion system protein [Burkholderia pseudomallei
           DM98]
 gi|167738786|ref|ZP_02411560.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
 gi|167816009|ref|ZP_02447689.1| type II/III secretion system protein [Burkholderia pseudomallei 91]
 gi|167845916|ref|ZP_02471424.1| type II/III secretion system protein [Burkholderia pseudomallei
           B7210]
 gi|167894492|ref|ZP_02481894.1| type II/III secretion system protein [Burkholderia pseudomallei
           7894]
 gi|167902899|ref|ZP_02490104.1| type II/III secretion system protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|237812067|ref|YP_002896518.1| bacterial type II/III secretion system protein [Burkholderia
           pseudomallei MSHR346]
 gi|238562618|ref|ZP_00440075.2| bacterial type II/III secretion system protein [Burkholderia mallei
           GB8 horse 4]
 gi|242315526|ref|ZP_04814542.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|254177827|ref|ZP_04884482.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|254179957|ref|ZP_04886556.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|254188633|ref|ZP_04895144.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254198005|ref|ZP_04904427.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|254260610|ref|ZP_04951664.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
 gi|254358355|ref|ZP_04974628.1| type II/III secretion system protein [Burkholderia mallei
           2002721280]
 gi|52209923|emb|CAH35895.1| putative exported fimbriae assembly protein [Burkholderia
           pseudomallei K96243]
 gi|76578054|gb|ABA47529.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710b]
 gi|121227764|gb|ABM50282.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|124291540|gb|ABN00809.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|126219896|gb|ABN83402.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|134246240|gb|EBA46329.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|148027482|gb|EDK85503.1| type II/III secretion system protein [Burkholderia mallei
           2002721280]
 gi|157936312|gb|EDO91982.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698866|gb|EDP88836.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|169654746|gb|EDS87439.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|184210497|gb|EDU07540.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|237503987|gb|ACQ96305.1| bacterial type II/III secretion system protein [Burkholderia
           pseudomallei MSHR346]
 gi|238522203|gb|EEP85649.1| bacterial type II/III secretion system protein [Burkholderia mallei
           GB8 horse 4]
 gi|242138765|gb|EES25167.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|243061822|gb|EES44008.1| type II/III secretion system protein [Burkholderia mallei PRL-20]
 gi|254219299|gb|EET08683.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
          Length = 441

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 181/390 (46%), Gaps = 50/390 (12%)

Query: 66  VQDVLVSDPTKADV-VVHSPRT-MYLFGKNVGQANVILI--GHDGKQMLNLDILIERDIA 121
           VQ V ++DP  ADV V+   R  + L  K  G  ++++   G D      ++++      
Sbjct: 44  VQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLMVWERGRDEPAAYTVNVV------ 97

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
                 R  +   +  V+  + T V+ G   T+    RA+ + +    + G         
Sbjct: 98  --SGAARALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDG--------- 146

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFV 239
             V+++  + G++ V + V + E  R +LKQ G  F     G + G   SFA   G   V
Sbjct: 147 -GVLDVSTVGGKNVVQVDVRVVEFSRSVLKQAGLNFFKQNNGFTFG---SFAPA-GLASV 201

Query: 240 SEGGDFS---------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           + GG  S               V G   R  F   L  LE     R LA+PTL A+SGQS
Sbjct: 202 TGGGTSSMSVSANIPIASAFNLVVGSATRGLFAD-LSILEANNLARVLAQPTLVALSGQS 260

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340
           ASF +GG+ +   V  S G  S+    YGV L  TPTVLSP RI L++  E S+      
Sbjct: 261 ASFLAGGE-IPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHS 319

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           I +N   +P+   R+ADTTVEL  G +  + GL+  +     + +P L  +PI+G  F++
Sbjct: 320 ITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKH 379

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRP 430
             + + + E+ I  TP LV P+A ++ S P
Sbjct: 380 LSYQQNDKELVIIVTPHLVAPIA-KNASLP 408


>gi|167919159|ref|ZP_02506250.1| type II/III secretion system protein [Burkholderia pseudomallei
           BCC215]
          Length = 432

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 181/390 (46%), Gaps = 50/390 (12%)

Query: 66  VQDVLVSDPTKADV-VVHSPRT-MYLFGKNVGQANVILI--GHDGKQMLNLDILIERDIA 121
           VQ V ++DP  ADV V+   R  + L  K  G  ++++   G D      ++++      
Sbjct: 35  VQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLMVWERGRDEPAAYTVNVV------ 88

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
                 R  +   +  V+  + T V+ G   T+    RA+ + +    + G         
Sbjct: 89  --SGAARALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDG--------- 137

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFV 239
             V+++  + G++ V + V + E  R +LKQ G  F     G + G   SFA   G   V
Sbjct: 138 -GVLDVSTVGGKNVVQVDVRVVEFSRSVLKQAGLNFFKQNNGFTFG---SFAPA-GLASV 192

Query: 240 SEGGDFS---------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           + GG  S               V G   R  F   L  LE     R LA+PTL A+SGQS
Sbjct: 193 TGGGTSSMSVSANIPIASAFNLVVGSATRGLFAD-LSILEANNLARVLAQPTLVALSGQS 251

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340
           ASF +GG+ +   V  S G  S+    YGV L  TPTVLSP RI L++  E S+      
Sbjct: 252 ASFLAGGE-IPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHS 310

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           I +N   +P+   R+ADTTVEL  G +  + GL+  +     + +P L  +PI+G  F++
Sbjct: 311 ITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKH 370

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRP 430
             + + + E+ I  TP LV P+A ++ S P
Sbjct: 371 LSYQQNDKELVIIVTPHLVAPIA-KNASLP 399


>gi|53723520|ref|YP_102954.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|126448299|ref|YP_001080603.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|126452556|ref|YP_001066058.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|167824385|ref|ZP_02455856.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
 gi|217423417|ref|ZP_03454918.1| type II/III secretion system protein [Burkholderia pseudomallei
           576]
 gi|226199666|ref|ZP_03795219.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|254199896|ref|ZP_04906262.1| type II/III secretion system protein [Burkholderia mallei FMH]
 gi|254206228|ref|ZP_04912580.1| type II/III secretion system protein [Burkholderia mallei JHU]
 gi|254297793|ref|ZP_04965246.1| type II/III secretion system protein [Burkholderia pseudomallei
           406e]
 gi|52426943|gb|AAU47536.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|126226198|gb|ABN89738.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|126241169|gb|ABO04262.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|147749492|gb|EDK56566.1| type II/III secretion system protein [Burkholderia mallei FMH]
 gi|147753671|gb|EDK60736.1| type II/III secretion system protein [Burkholderia mallei JHU]
 gi|157807445|gb|EDO84615.1| type II/III secretion system protein [Burkholderia pseudomallei
           406e]
 gi|217393275|gb|EEC33296.1| type II/III secretion system protein [Burkholderia pseudomallei
           576]
 gi|225928252|gb|EEH24286.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
          Length = 432

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 181/390 (46%), Gaps = 50/390 (12%)

Query: 66  VQDVLVSDPTKADV-VVHSPRT-MYLFGKNVGQANVILI--GHDGKQMLNLDILIERDIA 121
           VQ V ++DP  ADV V+   R  + L  K  G  ++++   G D      ++++      
Sbjct: 35  VQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLMVWERGRDEPAAYTVNVV------ 88

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
                 R  +   +  V+  + T V+ G   T+    RA+ + +    + G         
Sbjct: 89  --SGAARALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDG--------- 137

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFV 239
             V+++  + G++ V + V + E  R +LKQ G  F     G + G   SFA   G   V
Sbjct: 138 -GVLDVSTVGGKNVVQVDVRVVEFSRSVLKQAGLNFFKQNNGFTFG---SFAPA-GLASV 192

Query: 240 SEGGDFS---------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           + GG  S               V G   R  F   L  LE     R LA+PTL A+SGQS
Sbjct: 193 TGGGTSSMSVSANIPIASAFNLVVGSATRGLFAD-LSILEANNLARVLAQPTLVALSGQS 251

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340
           ASF +GG+ +   V  S G  S+    YGV L  TPTVLSP RI L++  E S+      
Sbjct: 252 ASFLAGGE-IPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHS 310

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           I +N   +P+   R+ADTTVEL  G +  + GL+  +     + +P L  +PI+G  F++
Sbjct: 311 ITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKH 370

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRP 430
             + + + E+ I  TP LV P+A ++ S P
Sbjct: 371 LSYQQNDKELVIIVTPHLVAPIA-KNASLP 399


>gi|254523433|ref|ZP_05135488.1| type II and III secretion system protein:Transport-associated
           [Stenotrophomonas sp. SKA14]
 gi|219721024|gb|EED39549.1| type II and III secretion system protein:Transport-associated
           [Stenotrophomonas sp. SKA14]
          Length = 433

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 46/388 (11%)

Query: 62  VPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           +P D++ V ++DP  AD+V +   R   L GK  G   ++L      +   + + ++  +
Sbjct: 28  LPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHRKQAEPQRVQVRVQSAV 87

Query: 121 AHLEMT----LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
                T    L     D    ++  +D+V+ H     +Q+ Q A       ++     Q 
Sbjct: 88  QGAANTGTSGLLFTQQDQQGLLQGSTDSVLAH-----MQEQQTAA------MALGKEGQL 136

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSG---PSKSFA 231
           A++S+        ++    V ++V + E  +  LKQIG  FQ+     + G   P     
Sbjct: 137 ADAST--------VSSGGVVQVEVKVVEFNKTALKQIGISFQNRNGSFAYGIARPGGQLP 188

Query: 232 ADFG---GKFVSEGGDFSVKGVLDRF-----SFETVLHA----LERATAIRTLAEPTLTA 279
            + G   G    E G+ S   +   F     S + + +A    L+     R LAEPTL A
Sbjct: 189 GNTGILPGMKEGESGNESTSPISSAFRLVFGSTKGLWNADVDLLQSNGMARVLAEPTLVA 248

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
           +SGQSASF +GG+ L        G T++T   +G+ L  TPTVL+P RI L++  E S+ 
Sbjct: 249 LSGQSASFLAGGE-LPILEPQGLGTTTITYKPFGIGLTVTPTVLAPNRIALKVAPEASDL 307

Query: 339 ---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                I +N   +PS   R+ADTTVEL  G + V+ GL+  ++      IPLL  +PI+G
Sbjct: 308 DYSNSIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSSVNKIPLLGDLPIIG 367

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVA 423
           + FRN  + R++ E+ I  TP LV+P+A
Sbjct: 368 SFFRNFDYKRQDKELVIIVTPRLVQPLA 395


>gi|114321311|ref|YP_742994.1| type II and III secretion system protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227705|gb|ABI57504.1| type II and III secretion system protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 428

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 133/254 (52%), Gaps = 21/254 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIG-----------FQHSITGSSSG---PSKSFAADFGGKFVS 240
           QV   + + EV R  L+++G           F     GS SG   P     A+ G     
Sbjct: 139 QVQADIRLVEVSRSKLREMGGSILGRRGSANFLFGGPGSVSGSVAPGGVGDANVGLPASD 198

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            G +    G   RF   ++++ALE      TLAEP+L A+SGQSA+F +GG+      SS
Sbjct: 199 SGFNIFYGGGGSRFL--SMINALEANDFAYTLAEPSLVALSGQSATFHAGGEFPVPVPSS 256

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356
            +   ++   ++GV + FTPTV+   R+ L++  EVSE      I +    +P  RVR+ 
Sbjct: 257 GSDTINIRFKEFGVRVSFTPTVIDGDRLTLKVAPEVSELDDTSGIEIAGTRVPGLRVRRT 316

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DTTV L  G + V++GL+ + +    +  P L  IP+LGA FR+SR + E+ E+ +  TP
Sbjct: 317 DTTVTLGDGESFVISGLVSNHMASQVDKFPGLGNIPVLGAFFRSSRVSEEDRELLMIVTP 376

Query: 417 FLVKPVAMRDLSRP 430
            LV+P+A RD  +P
Sbjct: 377 HLVQPLA-RDAEQP 389


>gi|299532819|ref|ZP_07046206.1| type II and III secretion system protein [Comamonas testosteroni
           S44]
 gi|298719043|gb|EFI60013.1| type II and III secretion system protein [Comamonas testosteroni
           S44]
          Length = 454

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/182 (41%), Positives = 106/182 (58%), Gaps = 6/182 (3%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            D+      +  LE     R LA PTL A+SGQSA+F SGG+ +   V + TG  ++   
Sbjct: 240 FDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGE-VPVPVPAGTGMVAIQYK 298

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGG 366
            YG+ L  +PTVLS  RI L++  E SE      I +N+  +PS   R+ADTTVEL  G 
Sbjct: 299 PYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATVPSITTRRADTTVELGDGE 358

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + V+ GL+  +     + +PLL  IPILG LF+   F ++E+E+ I  TP LVKP+A RD
Sbjct: 359 SFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIVVTPRLVKPLA-RD 417

Query: 427 LS 428
           ++
Sbjct: 418 VN 419


>gi|15602717|ref|NP_245789.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721161|gb|AAK02936.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 470

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 186/395 (47%), Gaps = 38/395 (9%)

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDILIER--D 119
           +  + VS P+ AD  +    +  ++ K  G+A V   G DGK +    +N++ LI    D
Sbjct: 47  IDTIFVSSPSVADYEILDDNSFIIYAKEEGRAEVTAFGQDGKPLTTDFINVNPLISNIND 106

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA-----------VELSETFL 168
           I+     ++    +SN+ V+ V    V+ G  RT ++S+ A            +++ET  
Sbjct: 107 ISDTNRQIKARFPNSNLSVKKVGKAYVIEGKARTQEESEEAHRIVGEALGNSKKVTETSF 166

Query: 169 SQS-GRNQYANSSSK----KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGS 222
           ++S G  +Y     K     V+N  ++A   Q+ +K+++ EV + + + +G     + G 
Sbjct: 167 NRSEGVKEYIPFLDKYQFDGVINNASVADSTQINVKLSVVEVNKKLTEALGINWGRVVGV 226

Query: 223 SSGPSKSFAADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            SGP    +    G F   GG   + +  GV         ++AL      + LAEP+++ 
Sbjct: 227 HSGPLLGGSVSLSGGFSGSGGSTLNINATGV------SAFINALNNQDNGKILAEPSISL 280

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           +SG++A    GG+  +       G+ ++   ++GV L     V    RI L +   VS  
Sbjct: 281 LSGETADILVGGELPFAQ-KDKEGSATIIYKEFGVKLIVGAKVQKNKRIRLALDQSVS-T 338

Query: 340 VIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           + G     N G +P +  R+A +  E+  G + ++ GL      +    +PLL  IPILG
Sbjct: 339 IAGSYAYDNVGTVPYFNTRRAKSIFEVADGESFIIGGLFSSQDAEGINKVPLLGDIPILG 398

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           + FRN+R +RE+ E+ I AT  +VKPV   D+  P
Sbjct: 399 SFFRNARTDREDKELVIVATVNVVKPVHESDIVYP 433


>gi|264680618|ref|YP_003280528.1| type II and III secretion system protein [Comamonas testosteroni
           CNB-2]
 gi|262211134|gb|ACY35232.1| type II and III secretion system protein [Comamonas testosteroni
           CNB-2]
          Length = 454

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/182 (41%), Positives = 106/182 (58%), Gaps = 6/182 (3%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            D+      +  LE     R LA PTL A+SGQSA+F SGG+ +   V + TG  ++   
Sbjct: 240 FDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGE-VPVPVPAGTGMVAIQYK 298

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGG 366
            YG+ L  +PTVLS  RI L++  E SE      I +N+  +PS   R+ADTTVEL  G 
Sbjct: 299 PYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATVPSITTRRADTTVELGDGE 358

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + V+ GL+  +     + +PLL  IPILG LF+   F ++E+E+ I  TP LVKP+A RD
Sbjct: 359 SFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIVVTPRLVKPLA-RD 417

Query: 427 LS 428
           ++
Sbjct: 418 VN 419


>gi|294102189|ref|YP_003554047.1| type II and III secretion system protein [Aminobacterium
           colombiense DSM 12261]
 gi|293617169|gb|ADE57323.1| type II and III secretion system protein [Aminobacterium
           colombiense DSM 12261]
          Length = 384

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 187/434 (43%), Gaps = 67/434 (15%)

Query: 1   MRYLQRTFFTMMSIFLFS----SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56
           M  L+R  +   ++   +    + P +A    +   ++AV+   +V     K++S+G N 
Sbjct: 1   MACLKRKLWVFFAVVFLTVVVGALPVLAATYHLDVGDSAVLKYQNV-----KRMSVG-NP 54

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
            ++  +P+D   VL++                  GK  G A +I+    G  M    IL+
Sbjct: 55  DVLDAIPLDNNQVLLT------------------GKVEGGAALIVWDAAGMHMEK--ILV 94

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
              I      L+  +   NI V +    VVL G V+T +D  RAV ++  F         
Sbjct: 95  HPSIEAPSWELKELLQAENIDVTVRGGAVVLEGKVKTPRDRLRAVAIAGAF--------- 145

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--HSITGSSSG-----PSKS 229
                +KV+NLL +    Q+ L+  + EV++     +G +      G+  G     P   
Sbjct: 146 ----GEKVINLLEVDSAPQIKLRAVVMEVKKKDGDALGMKRLEGQEGTFWGIFDLTPDTG 201

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              D+     ++G  +S K           ++AL      + L+ P LT +SG+ AS   
Sbjct: 202 HMLDY-----TKGAHYSAK-------INAWINALVENKEAKILSRPYLTTLSGEEASLNV 249

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNA 345
           GG+ +   V        +    YGV++ FTP +   G I L  + EVSE      I    
Sbjct: 250 GGE-IPVPVGVDNNEIKIEWKPYGVIMKFTPELDGIGEIWLTFEAEVSEIDWENAIETQG 308

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+ R RK    V L    ++V+ GLL +   +L + IPLL  IPI+G LF++  F  
Sbjct: 309 IKIPAIRTRKIANKVRLGHNESLVVGGLLDNKQSKLVKKIPLLGDIPIIGELFKSREFTN 368

Query: 406 EETEIFIAATPFLV 419
           +ETE+ I  TP +V
Sbjct: 369 DETELVITVTPEVV 382


>gi|221070074|ref|ZP_03546179.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
 gi|220715097|gb|EED70465.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
          Length = 454

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/182 (41%), Positives = 106/182 (58%), Gaps = 6/182 (3%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            D+      +  LE     R LA PTL A+SGQSA+F SGG+ +   V + TG  ++   
Sbjct: 240 FDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGE-VPVPVPAGTGLVAIQYK 298

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGG 366
            YG+ L  +PTVLS  RI L++  E SE      I +N+  +PS   R+ADTTVEL  G 
Sbjct: 299 PYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATIPSITTRRADTTVELGDGE 358

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + V+ GL+  +     + +PLL  IPILG LF+   F ++E+E+ I  TP LVKP+A RD
Sbjct: 359 SFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIVVTPRLVKPLA-RD 417

Query: 427 LS 428
           ++
Sbjct: 418 VN 419


>gi|319795779|ref|YP_004157419.1| type II and iii secretion system protein [Variovorax paradoxus EPS]
 gi|315598242|gb|ADU39308.1| type II and III secretion system protein [Variovorax paradoxus EPS]
          Length = 462

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/249 (35%), Positives = 128/249 (51%), Gaps = 20/249 (8%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + V ++V + E  R +LKQ G    S   +S+G S    +  G K  +   D S+ G  +
Sbjct: 176 NTVQVEVKVVEFNRSVLKQAGLNIFSTRANSNGFSFGVFSPAGLKSSTFASDGSINGEYN 235

Query: 253 R---------FSFETV-----LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                     F+F        +  LE     R LAEPTL A+SGQSASF SGG+ L   V
Sbjct: 236 NPLAQAFSLLFNFGKAGIGLNVGFLEGNGMARVLAEPTLVAMSGQSASFLSGGE-LPVPV 294

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVR 354
               G TS+    +G+ L  TPTVLS  RI L++  E S+      + +N   +P+   R
Sbjct: 295 PQGLGTTSIEYKPFGIGLTLTPTVLSNDRIVLKVAPEASDLDYTNSLSINGIAVPAISTR 354

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +ADTTVEL  G + ++ GL+        + +PLL  +PILG+ F+ +++   E E+ I  
Sbjct: 355 RADTTVELGDGESFIIGGLVSRTTTSNADKVPLLGDLPILGSFFKQNKYQMSEKELVILV 414

Query: 415 TPFLVKPVA 423
           TP LVKP+A
Sbjct: 415 TPHLVKPIA 423


>gi|198284413|ref|YP_002220734.1| type II and III secretion system protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666419|ref|YP_002427081.1| bacterial type II/III secretion system protein [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248934|gb|ACH84527.1| type II and III secretion system protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518632|gb|ACK79218.1| bacterial type II/III secretion system protein [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 478

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/268 (34%), Positives = 142/268 (52%), Gaps = 25/268 (9%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSS----GPSKSFAADFG 235
           + KV++   I  +D+V + V + E  +  LK +G    S TG  S    GPS   +A++ 
Sbjct: 169 TGKVIDQSVIPVDDEVQVGVKVVEFSKAQLKNVGINIFSSTGGFSLGTFGPSTLTSANYP 228

Query: 236 GKFVSEG-GDFSVKGV------------LDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               S G G  ++ GV            +      + L  LE    +R LAEPTL A++G
Sbjct: 229 VSLASGGPGALAITGVAPFTQAFNLVGGVGNSGLSSYLSLLEGNNILRVLAEPTLVAMNG 288

Query: 283 QSASFTSGGQ-HLYKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
           Q ASF +GG+  +    SS  G  ++T     YGV L  TPT+LS  RI L +   VS  
Sbjct: 289 QQASFLAGGEIPIPVPQSSGVGTPTITIQYKKYGVQLDLTPTILSAHRIALHVAPSVSSL 348

Query: 339 ---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                I +N   +P+  VR+ADTTV L +G ++V+ GL+   +QQ    +P+L  +PILG
Sbjct: 349 DYTNAITLNGYSVPALLVRQADTTVTLGNGESLVIGGLVDRQMQQNISKVPILGDLPILG 408

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVA 423
           A FR+ ++++++ E+ I  TP LV+P+A
Sbjct: 409 AFFRSIQYSKQDMELAIIVTPRLVRPIA 436


>gi|239817412|ref|YP_002946322.1| type II and III secretion system protein [Variovorax paradoxus
           S110]
 gi|239803989|gb|ACS21056.1| type II and III secretion system protein [Variovorax paradoxus
           S110]
          Length = 457

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 151/313 (48%), Gaps = 33/313 (10%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
           A +   +E+   +  L G + ++   Q+A E +      +G  + A    + V+N+ +  
Sbjct: 118 AATTYSIEVRRRSATLAGTMDSVAAHQQARETA-----MAGMPEKAELIDRSVVNVRS-- 170

Query: 192 GEDQVTLKVTIAEVRRDILKQIG------------FQHSITGSSSGPSKSFAADFGGKFV 239
             + V ++V + E  R +LKQ G            F   + G SS  S +FA++  G   
Sbjct: 171 --NTVQVEVKVVEFNRSVLKQAGLNIFSTRANSNGFSFGVFGPSSLGSTTFASN--GSIS 226

Query: 240 SEGGDFSVKGVLDRFSFETV-----LHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
            E  +   +     F+F        +  LE     R LAEPTL A+SGQSASF +GG+ L
Sbjct: 227 GEYHNPLAQAFSLLFNFGKAGVGLNVGFLEGNGMARVLAEPTLVAMSGQSASFLAGGE-L 285

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPS 350
                   G TS+    +G+ L  TPTVLS  RI L++  E S+      + +    +P+
Sbjct: 286 PVPAPQGLGTTSIEYKPFGIGLTLTPTVLSNDRIVLKVAPEASDLDYTNSLSIGGVAVPA 345

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R+ADTTVEL  G + ++ GL+        + +PLL  +PILG  FR +++   E E+
Sbjct: 346 ITTRRADTTVELGDGESFIIGGLVSRTTTSNVDKVPLLGDLPILGTFFRQNKYQMSEKEL 405

Query: 411 FIAATPFLVKPVA 423
            I  TP LVKP+A
Sbjct: 406 VILVTPHLVKPIA 418


>gi|70734199|ref|YP_257839.1| type II/III secretion system protein [Pseudomonas fluorescens Pf-5]
 gi|68348498|gb|AAY96104.1| bacterial type II/III secretion system protein [Pseudomonas
           fluorescens Pf-5]
          Length = 417

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 131/251 (52%), Gaps = 27/251 (10%)

Query: 195 QVTLKVTIAEVRRDILKQ-----IGFQHS----------ITGSSSGPSKSFAADFGGKFV 239
           QV   +   EV R  LK+      G  H+          +TG +SG   S    FGG+  
Sbjct: 133 QVQTDIRFVEVSRTKLKEASVSIFGRGHNFLFGAPGTAPVTGGTSG---SVTPTFGGRRT 189

Query: 240 S---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +   + G F++          T+++ALE +    TLA P+L A+SGQSASF +GG+    
Sbjct: 190 NIPLDNGTFNIG--FGNGRVLTLINALEGSGFAYTLARPSLVALSGQSASFLAGGEIPIP 247

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352
             S+ + + ++   ++G+ L  TPT++  GRI L++  EVSE      + +    +P+  
Sbjct: 248 VPSTGSNSVTIEYKEFGIRLTLTPTIVDRGRISLKVAPEVSELDYSNAVTIAGTQVPALT 307

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           VR+ DT++ L  G + V++GL+  +        P L  IP+LGA FR++  NREE E+ +
Sbjct: 308 VRRTDTSISLADGESFVISGLISTNNSSQVNKFPGLGDIPVLGAFFRDTTINREERELLM 367

Query: 413 AATPFLVKPVA 423
             TP LV+P+A
Sbjct: 368 VVTPHLVQPLA 378


>gi|296121060|ref|YP_003628838.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
 gi|296013400|gb|ADG66639.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
          Length = 622

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 178/403 (44%), Gaps = 37/403 (9%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           K+ I      ++Q P  +  V   DP    V   +   + + G   G   +++   +G  
Sbjct: 59  KLEIAERFARVVQFPRKILRVDGFDPAVLSVTALAHDQLRVQGITEGITTMVITDENGA- 117

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           +  +D+++  D   L+  L R   ++++ V  + D V+L G V   Q     V++++ + 
Sbjct: 118 ITTIDVMVAGDARLLQAVLSREYPNTSVTVTKLKDNVLLRGWVVEPQQITEIVDIAKLY- 176

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------S 222
                  Y N     V+N + + G  QV L+  + EV+R  L+ +G   +  G      S
Sbjct: 177 -------YPN-----VLNQMKMGGPQQVQLRCKVMEVQRSKLRSLGLNFTYLGRNVAFSS 224

Query: 223 SSG---PSKSFAADFGGKF---VSEGG----DFSVKGVLDRFSFETVLHALERATAIRTL 272
           + G   P  +F    GG     +++ G      S+  V D F+F  +L AL     ++  
Sbjct: 225 TPGAISPLDAFTVPIGGPPGVGLAQSGFRNATMSLGIVGDDFAFGGLLEALREEGLLKIQ 284

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           AEPT+   SG+ A   SGG+     V    G  ++   ++GV L   P +LSP R+   I
Sbjct: 285 AEPTIVTRSGEPAKIVSGGEFPIP-VPQGLGTIAIEWREFGVRLESVPMILSPNRLKQTI 343

Query: 333 QTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
             EVSE      + +N+  +P    R  +T VE+  G T+ + GL+          IP L
Sbjct: 344 IAEVSERDLTNAVTLNSTTVPGLTKRTVETQVEMNFGQTLAIGGLISSRKTAQTSKIPFL 403

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
            ++P +GA FR   ++  ETE+ +  TP  V   AM     PD
Sbjct: 404 GELPYVGAAFRRVNYDEAETELLVLITPEFVS--AMDPAQVPD 444


>gi|225872754|ref|YP_002754211.1| type II/III secretion system protein [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792181|gb|ACO32271.1| type II/III secretion system protein [Acidobacterium capsulatum
           ATCC 51196]
          Length = 480

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 181/386 (46%), Gaps = 33/386 (8%)

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           + + L     ++ V VSDP   +    SP  + +  K  G +++++    G+  +   + 
Sbjct: 63  RSMFLDTATPLKRVYVSDPAVLNSFTASPHQVLITAKAPGISSLVVWDESGRSNV-YTVS 121

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
            + D++ L+  +        I    + D V L G V T  ++  A +L++ +        
Sbjct: 122 SDIDVSGLQAAINAAFPHDMIHASALQDRVTLTGEVATESEAAAAEKLAQGY-------- 173

Query: 176 YANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGP 226
                +K V N +++A +   QV LKV  AEV R   +Q+GF         ++TG+   P
Sbjct: 174 -----AKTVENSIDLAPQRVQQVQLKVRFAEVDRTRAQQLGFNFISAGRNAAVTGTQQFP 228

Query: 227 SKS---FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           S S      +     ++      +       +    + ALE    ++ LAEPT+T+ISG 
Sbjct: 229 SFSNYTLGGNSTANPITVSNPLDLLLYSSDLNLGATIQALENDQVLQILAEPTITSISGV 288

Query: 284 SASFTSGGQHLYKTVSS-STGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSE-- 338
            ASF SGGQ  +  V   +TG TSVT     YGV L FTP V   G I L++  EVS   
Sbjct: 289 EASFLSGGQFPFPVVQGGTTGFTSVTVQFRPYGVKLDFTPYVNPDGTIRLKVAPEVSALD 348

Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
               + ++   +P+   R+A T V L +G +  ++GLL   +    E +P +S+IPILG 
Sbjct: 349 YTNEVQISGYSIPAIDTRRAKTEVVLKNGQSFAISGLLDHRLTNDYERMPGISRIPILGQ 408

Query: 397 LFRNSRFNREETEIFIAATPFLVKPV 422
           LFR+ +     T++ +  TP +V P+
Sbjct: 409 LFRSYQKQASTTDLIVIVTPTIVDPL 434


>gi|260768627|ref|ZP_05877561.1| type II and III secretion system protein [Vibrio furnissii CIP
           102972]
 gi|260616657|gb|EEX41842.1| type II and III secretion system protein [Vibrio furnissii CIP
           102972]
          Length = 387

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/248 (34%), Positives = 125/248 (50%), Gaps = 24/248 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSE---GGDF-- 245
           QV   + + EV +  LK+ GF     G  SG +     + AA  GG F  E   G  F  
Sbjct: 104 QVQTDIKVVEVSKSALKEAGF---FFGKQSGNTTFGIGNNAALNGGNFAGELLSGNSFLP 160

Query: 246 ------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                  V G + R    T+  AL       TLAEP+L  +SG +A+F +GG+  Y   +
Sbjct: 161 LSNAFNVVIGDMSRGILSTI-SALNANGFAYTLAEPSLVTMSGHTATFLAGGEFPYPK-A 218

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRK 355
           SS G  ++   ++GV L+ +PTV+   RI L++  EVSE      +      +P   VR+
Sbjct: 219 SSDGDITIEFKEFGVRLNLSPTVMKDNRIMLKVAPEVSELNYNNAVSTGGVLVPGMSVRR 278

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            DTTV+L  G T V++GL+        +  P L  IPILGA F ++RF + + E+ +  T
Sbjct: 279 TDTTVQLGDGETFVISGLISSSTMNNSDRFPGLGDIPILGAFFSSTRFEKNDKELMMVVT 338

Query: 416 PFLVKPVA 423
           P LVKP+A
Sbjct: 339 PHLVKPIA 346


>gi|77456876|ref|YP_346381.1| type II and III secretion system protein [Pseudomonas fluorescens
           Pf0-1]
 gi|77380879|gb|ABA72392.1| putative Flp pilus assembly protein, secretin [Pseudomonas
           fluorescens Pf0-1]
          Length = 422

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 177/389 (45%), Gaps = 52/389 (13%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           +E+G+G + ++        Q PV +  V V DP  ADV V   + + L G   G A  ++
Sbjct: 42  LEVGEGLQQAV--------QSPVAITRVAVGDPKIADVRVTGDQGVLLTGVGPG-ATTLM 92

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           I           ++  +  A   MT     + S               +   +Q   R V
Sbjct: 93  IWTACASTPRQSMVFVQGKASAAMTAAALPSSSE------------PNLPSQVQTDIRFV 140

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           E+S T L ++G + Y   S+  +           VT  V        +L       +I  
Sbjct: 141 EVSRTKLKEAGTSIYGKGSNNFLFGAPGTVPNTGVTPGVV------PLL-------NIDP 187

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             + PS   A D     +  GG  S         F  +++ALE +    TLA P+L A+S
Sbjct: 188 RIAAPSIPLANDMFN--IVWGGGSS--------KFLGIVNALEGSGFAYTLARPSLVALS 237

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQSASF +GG+      S+++ + S+   ++G+ L  TPTV+S  RI L++  EVSE  +
Sbjct: 238 GQSASFLAGGEVPIPVPSANSNSYSIEYKEFGIRLTLTPTVVSNDRIALKVAPEVSE--L 295

Query: 342 GVNAG------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             N G       +P++ +R+ DT++ L  G + V++GL+           P L  IP+LG
Sbjct: 296 DYNNGVTIGGTKVPAFTIRRTDTSISLADGESFVISGLISTRNASEVNKFPGLGDIPVLG 355

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424
           A FRNS  NREE E+ +  TP LV+P+A+
Sbjct: 356 AFFRNSSINREERELLMIVTPHLVQPLAV 384


>gi|293391332|ref|ZP_06635666.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|32452623|gb|AAP43985.1| RcpA [Aggregatibacter actinomycetemcomitans]
 gi|290951866|gb|EFE01985.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 460

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 182/391 (46%), Gaps = 25/391 (6%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114
           ++Q    +  + VS P  AD  +    +  ++ K  G+  V   G DG+ +    +N+D 
Sbjct: 41  LVQTKEKIDTIFVSSPNIADYEILDDNSFIIYAKEEGRTEVTAFGVDGRPLTSDTVNVDS 100

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163
           ++   IA     L+    ++N+ V+ V    V+ G  R+ ++S   +R V        ++
Sbjct: 101 VV-TSIADTNKQLKSHFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGNGRKI 159

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +ET L +             V++  NIA   Q+ +K+++ EV + + + +G   S   + 
Sbjct: 160 TETKLGEDALPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHV-AG 218

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           SGP       FGG F    G       LD       ++AL+  +  + LAEP ++ +SG+
Sbjct: 219 SGPLLGGNFGFGGGFNGNQGVLR----LDAKGISAFINALDNQSNGKVLAEPNISMLSGE 274

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           +A    GG+  +       G+ ++   ++G+ L     +    RI L +   VS      
Sbjct: 275 TADILVGGEIPFAQ-RDKDGSPTIIYKEFGIKLAVAAKLQKNDRIRLALDQSVSTIAGNY 333

Query: 344 N---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           N    G++P +  RKA +  E+ +G + ++ GL   +  +    +PLL  IPILG+ FRN
Sbjct: 334 NFEGVGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRN 393

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +   R++ E+ I AT  +VKPV  +D+  PD
Sbjct: 394 ATTERDKKELVIVATVNVVKPVNEKDVVYPD 424


>gi|78486068|ref|YP_391993.1| type II and III secretion system protein [Thiomicrospira crunogena
           XCL-2]
 gi|78364354|gb|ABB42319.1| Flp (type IV) pilus assembly protein CpaC homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 520

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 153/305 (50%), Gaps = 28/305 (9%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVR-----------RDILKQIG-FQHSITGSSSGPS-KSF 230
           V+N++++ G+ Q+ L V +AEV            RD   + G F     G+ +  S  + 
Sbjct: 215 VVNMIDVTGKSQIKLSVRVAEVVKGNPFKSGVAIRDKKDRFGIFPPGNLGTQALFSLNNS 274

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
             D  G        F +    +  S   VL  LE     R LA+P L   SG++A+F  G
Sbjct: 275 PGDTAGISFPHPDAFQIGFNPENGSIFGVLSLLEGHNLARVLAKPELIVQSGETATFLVG 334

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--- 347
           G+ +   V+ +    +V+  +YGV L F+P V   G I + ++ EVS+    ++A +   
Sbjct: 335 GE-VAIPVAQNADTITVSYKEYGVRLRFSPIVTESGDIQMTVEPEVSD----IDAANGTQ 389

Query: 348 -----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                +PS+R RK  TT+ L  G + ++ GLL+D+I+     +P+L  IPILGALFR++ 
Sbjct: 390 TNNIIIPSFRSRKTSTTITLAPGQSFIIGGLLQDNIRSQVSKVPVLGDIPILGALFRSNS 449

Query: 403 FNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           +  +++E+ I  TP  V PV A + +S P ++     +  AFF  +V ++  P+  S + 
Sbjct: 450 YVHDKSELAIMVTPTFVAPVDAGKKVSLPGENLKRPSNMDAFFLGKVAEVL-PEGESALP 508

Query: 462 GQNYK 466
             N K
Sbjct: 509 ESNVK 513


>gi|110833080|ref|YP_691939.1| type II secretion system protein [Alcanivorax borkumensis SK2]
 gi|110646191|emb|CAL15667.1| type II secretion system protein, probable [Alcanivorax borkumensis
           SK2]
          Length = 406

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 123/240 (51%), Gaps = 28/240 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV   + I EV R  L   GF++S            A+  GG            G  D F
Sbjct: 141 QVQTDIRIMEVSRSKLNSFGFEYSNIFDGGNTQVGVASPGGG------------GPSDSF 188

Query: 255 SF-------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
           +         T+++ALE      TLA+P+LTA+SGQ+A+F SGG+    T S + G   V
Sbjct: 189 NLFRLGKNSTTIINALESGGFAYTLAKPSLTALSGQTATFLSGGEFPVPTRSDNNGV-QV 247

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRKADTTVE 361
               +G+ L  TPTV+S  +I L++  EVSE  +  +AG       +P  RVR+++TTV 
Sbjct: 248 EFKSFGIGLALTPTVISGDQIILKVAPEVSE--LDFSAGVESAGTSIPGLRVRRSETTVS 305

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L  G T +++GL+  +       IP L  +P+LGA FR+ + +RE+ E+ +  TP LV P
Sbjct: 306 LAPGETFIISGLVSQNTVNNSNRIPGLGNLPVLGAFFRSGQLSREDKEMVMVVTPHLVSP 365


>gi|167836794|ref|ZP_02463677.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 423

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 187/417 (44%), Gaps = 59/417 (14%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPRT-MYL 89
           A AA +   ++  G  ++I++G            VQ V + DP  ADV V+   R  + L
Sbjct: 2   AQAAEMGAIELTTGAQRQIAVGRG----------VQRVAIGDPNVADVLVIKGGRGGVLL 51

Query: 90  FGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
             K  G  ++++   G D   +  +D++            R  +      V     T V+
Sbjct: 52  VAKAAGSTSLMVWERGRDEPAVYTVDVV--------SGAARALLDGGAPGVRAYDGTAVV 103

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T+    RA+ + +    + G    A++          + G++ V + V + E  R
Sbjct: 104 SGSAATLDAHARALAVGKGMAGKGGGVVDAST----------VGGKNVVQVDVRVVEFSR 153

Query: 208 DILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------VKGV 250
            +LKQ G  F     G + G   SFA   G   V+ GG  S               V G 
Sbjct: 154 SVLKQAGLNFFKQNNGFTFG---SFAPA-GLASVTGGGTSSMSVSANIPIASAFNLVVGS 209

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R  F   L  LE     R LA+PTL A+SGQSASF +GG+ +   V  S G  S+   
Sbjct: 210 ATRGLFAD-LSILEANNLARVLAQPTLVALSGQSASFLAGGE-IPVPVPQSLGTISIDWK 267

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGG 366
            YGV L  TPTVLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G 
Sbjct: 268 PYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGE 327

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           + V+ GL+  +     + +P L  +PI+G  F++  + + + E+ I  TP LV P+A
Sbjct: 328 SFVIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA 384


>gi|188592032|ref|YP_001796630.1| type II secretion system protein; precursor [Cupriavidus
           taiwanensis LMG 19424]
 gi|170938406|emb|CAP63393.1| putative Type II secretion system protein; putative precursor
           [Cupriavidus taiwanensis LMG 19424]
          Length = 475

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 132/258 (51%), Gaps = 30/258 (11%)

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGF--------------------QHSITGSSSGPSKS 229
           ++G  QV +KV   E+ + +LK++G                     + + T  S G   S
Sbjct: 184 LSGTVQVDVKVV--EISKTVLKEVGINFFRNNSGFAFGTFSPSTLNKFTFTPGSGGAPGS 241

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           F+AD      +    F++            +  LE     R LAEP+L A+SGQSASF +
Sbjct: 242 FSADIASPMSNA---FNLVAASLTHGIFANISLLEANGLARVLAEPSLVALSGQSASFLA 298

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PV--IGVNA 345
           GG+ +   V  + G T++    +G+ L  +PTVLS  RI L++  E S+  P   I +N 
Sbjct: 299 GGE-IPIPVPQALGTTTIQFKPFGIGLTVSPTVLSADRIALKVAPEASDLDPSRGISING 357

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+   R+ADTTVEL  G + V+ GL+  +       +P+L  +P++GA F+N  F++
Sbjct: 358 AVVPAIVTRRADTTVELGDGESFVIGGLVSRNTVSNVNKVPVLGDLPVIGAFFKNLNFHQ 417

Query: 406 EETEIFIAATPFLVKPVA 423
           E+ E+ I  TP LVKP+A
Sbjct: 418 EDRELMIVVTPRLVKPMA 435


>gi|104779900|ref|YP_606398.1| type II/IV secretion system protein D [Pseudomonas entomophila L48]
 gi|95108887|emb|CAK13583.1| Putative type II/IV secretion system protein D [Pseudomonas
           entomophila L48]
          Length = 426

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 104/173 (60%), Gaps = 4/173 (2%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F  +++ALE +    TLA P+LT +SG +ASF +GG+      SS +   S+   ++GV 
Sbjct: 216 FLAMINALENSGFAYTLARPSLTVLSGLTASFLAGGEIPIPVPSSGSDNVSIEYKEFGVR 275

Query: 316 LHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           L  TPTV+S  RI L++  EVSE      + +    +P   VR+ DT++ L  G + +++
Sbjct: 276 LALTPTVVSGNRINLKVAPEVSELDYNNAVVIAGTRVPGLSVRRTDTSITLADGESFIIS 335

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           GL+  +++   + +P L  +PI+GA FR +  NREETE+ +  TP LV+P+A+
Sbjct: 336 GLITSNVRSGVDKMPGLGNLPIIGAFFRQTALNREETELLMIVTPHLVQPLAV 388


>gi|229588195|ref|YP_002870314.1| putative type II secretion system protein [Pseudomonas fluorescens
           SBW25]
 gi|229360061|emb|CAY46915.1| putative type II secretion system protein [Pseudomonas fluorescens
           SBW25]
          Length = 405

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 181/408 (44%), Gaps = 75/408 (18%)

Query: 28  PIKEANAAVINISD-------VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
           P+  A AA  N S        VE+G+G +          LQ PV +  + + DP  ADV 
Sbjct: 22  PVGMALAAPGNCSALGQLPAVVEVGEGLQQE--------LQSPVAITRLAIGDPKIADVR 73

Query: 81  VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE-RDIAHLEMTLRRFIADSNIRVE 139
           V+  R   L G   G  ++++            + ++ R  + L         D  +  +
Sbjct: 74  VNGDRHFLLTGVASGATSLMVWTACASTPRQSMVFVKGRATSALTSLSLSPSEDPLLPSQ 133

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
           + +D       +R ++ S+  ++ + T L  +G+N +  S         N+    +   K
Sbjct: 134 VQTD-------IRFVEVSRTKLKEASTRLLGTGKNFFLGSP--------NLLSPSEGVFK 178

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           + ++                       + SF   FGG  VS                  +
Sbjct: 179 LPVS-----------------------TDSFNVGFGGGRVS-----------------AM 198

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           ++ALER+    TLA P+L A+SGQSASF +GG+      S+ +   S+   ++G+ L  T
Sbjct: 199 INALERSGFAYTLARPSLVAMSGQSASFLAGGEVPVPVPSAGSDTISIEYKEFGIRLTLT 258

Query: 320 PTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PTV+   RI L++  EVSE      + +    +P+  VR+ DT+V L  G + V++GL+ 
Sbjct: 259 PTVIDRNRITLKVAPEVSELDYSNAVIIQGIQVPALTVRRTDTSVSLADGESFVISGLIS 318

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            + +      P L  IPILGA FR+S  +REE E+ +  TP LV+P+A
Sbjct: 319 TNNRSTISKFPGLGDIPILGAFFRDSNISREEKELLMIVTPHLVQPLA 366


>gi|116694140|ref|YP_728351.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16]
 gi|113528639|emb|CAJ94986.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16]
          Length = 470

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 132/258 (51%), Gaps = 30/258 (11%)

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGF--------------------QHSITGSSSGPSKS 229
           ++G  QV +KV   E+ + +LK++G                     + + T  S G   S
Sbjct: 179 LSGTVQVDVKVV--EISKTVLKEVGINFFRNNSGFAFGTFSPSTLNKFTFTPGSGGAPGS 236

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           F+AD      +    F++            +  LE     R LAEP+L A+SGQSASF +
Sbjct: 237 FSADIASPMSNA---FNLVAASLTHGIFANISLLEANGLARVLAEPSLVALSGQSASFLA 293

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PV--IGVNA 345
           GG+ +   V  + G T++    +G+ L  +PTVLS  RI L++  E S+  P   I +N 
Sbjct: 294 GGE-IPIPVPQALGTTTIQFKPFGIGLTVSPTVLSADRIALKVAPEASDLDPSRGISING 352

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+   R+ADTTVEL  G + V+ GL+  +       +P+L  +P++GA F+N  F++
Sbjct: 353 AVVPAIVTRRADTTVELGDGESFVIGGLVSRNTVSNVNKVPVLGDLPVIGAFFKNLNFHQ 412

Query: 406 EETEIFIAATPFLVKPVA 423
           E+ E+ I  TP LVKP+A
Sbjct: 413 EDRELMIVVTPRLVKPLA 430


>gi|322434104|ref|YP_004216316.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321161831|gb|ADW67536.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 484

 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 205/439 (46%), Gaps = 48/439 (10%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           ++G  + + + +   ++L    +++ + V +PT        P  + L  K  G +++++ 
Sbjct: 55  DMGGDETLHLLVGHSMVLHSTSNIKRIFVGNPTVLQSYTGGPSEIVLTAKATGVSSLVVW 114

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
              G+  L   I  + D   L+ ++      S I V      + L G V T + S  A +
Sbjct: 115 DTQGQSCL-YTIAADMDPETLQRSMHDAYPKSQIDVGGHEGRIFLSGTVPTQEASDNAFK 173

Query: 163 LSETFLSQSGRNQYANSSSKKVMN---LLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--- 216
           L             A+S SK V+N   ++ I G+ QV LK+ I EV R  ++Q G     
Sbjct: 174 L-------------ASSYSKDVVNSIRVVTIHGK-QVQLKLRIVEVDRTKMEQFGINLFR 219

Query: 217 ----HSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFE------TVLH 261
               +++ G ++G   S A    G   +          +V   L+ F +         + 
Sbjct: 220 PTASNAVGGLTTGQFPSLATYATGTPATATAPAVPATINVNNPLNFFIYSFSHEIGATIQ 279

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLH 317
            LE+   ++ LAEPTLTA+SGQSA F SGG+  +  V    S++  A +++   YGV + 
Sbjct: 280 DLEQKQILQVLAEPTLTAMSGQSAKFLSGGEFPFPVVQGGGSAAGVAITISFRPYGVKVD 339

Query: 318 FTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           FTPTV   G I L++  EVS       + ++   +P+   R+A+T VE+ +G T  L GL
Sbjct: 340 FTPTVNEDGSIHLKVAPEVSTLDFSNAVTISGFTIPALSTRRAETEVEILNGQTFALTGL 399

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSR-FNREETEIFIAATPFLVKPVAM-RDLSRPD 431
           L     +    IP +S++PILG LF  ++ +     E+ +  T  +V P+    D ++PD
Sbjct: 400 LDHRTTESLSQIPGISRLPILGKLFATTKSYTHSVIELVVLVTANVVDPLTQPTDTTQPD 459

Query: 432 DHYSVEDDAKAFFFNRVNK 450
              +V +  K+ F N ++K
Sbjct: 460 --MAVPNLDKSVFDNDLSK 476


>gi|254429436|ref|ZP_05043143.1| Bacterial type II and III secretion system protein [Alcanivorax sp.
           DG881]
 gi|196195605|gb|EDX90564.1| Bacterial type II and III secretion system protein [Alcanivorax sp.
           DG881]
          Length = 384

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/244 (34%), Positives = 127/244 (52%), Gaps = 26/244 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--- 251
           QV   + + EV R  L Q+G  +S + +    +   AA         G  F V G +   
Sbjct: 108 QVQTDIRVLEVSRSELNQLGMSYSNSFNGGQSAVGIAA--------PGSGFQVPGAVPTP 159

Query: 252 ------DRFSFET----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                 + F F       ++ALE      TLAEP+LT++SGQSASF SGG+    T S++
Sbjct: 160 LGTEGFNLFGFGANSVLAINALEAGGFAYTLAEPSLTSLSGQSASFLSGGEFPVPTRSTT 219

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDM--PSYRVRKAD 357
            G   +   ++G+ L  TPTV+   +I L++  EVSE     GV  G +  P  RVR+A+
Sbjct: 220 DG-VQIEFKEFGIGLSLTPTVIDKSQIILKVAPEVSELDFSAGVETGGVAVPGLRVRRAE 278

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTV L  G T +++GL+  +     + +P +  IP+LGA FR+SR  +++ E+ +  TP 
Sbjct: 279 TTVSLAPGETFIISGLVSRNTINSSDRLPGIGNIPLLGAFFRSSRIQKDDKELVMVVTPH 338

Query: 418 LVKP 421
           LV P
Sbjct: 339 LVTP 342


>gi|319943382|ref|ZP_08017664.1| type II and III secretion system protein [Lautropia mirabilis ATCC
           51599]
 gi|319743197|gb|EFV95602.1| type II and III secretion system protein [Lautropia mirabilis ATCC
           51599]
          Length = 434

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 150/310 (48%), Gaps = 43/310 (13%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
           +S +R   + D ++L G   T + + RA EL + +               +V++L++  G
Sbjct: 113 NSGVRARALGDRILLEGQNPTEEGAWRAAELVKRY--------------PQVISLVSRRG 158

Query: 193 EDQ-VTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADF--GGKFVSEGGDF 245
            +Q + L+V + E+ R+ LKQ+G +    G+     SGPS     DF   G F+ EGG  
Sbjct: 159 YEQMINLEVKMIEIGRNALKQLGVRWQGGGAGDWAVSGPSFGVIGDFKRSGAFLPEGGAA 218

Query: 246 SVKGVLDRFSFETVLHALERATAIR-----------------TLAEPTLTAISGQSASFT 288
           + +G    F+    +H    + ++                   LAEP L+  SG  A F 
Sbjct: 219 ATRG----FAVAPRIHPFATSASMVSSLSSMIDLMVQNGDAAVLAEPRLSTRSGGKARFV 274

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           +GG+ L   V S+ GA +V   +YGV     P V + G I   + TEVS     V    +
Sbjct: 275 AGGE-LPIPVLSANGAANVDFKEYGVRFEVEPVVNAQGVISASLHTEVSSIDDEVTVMGV 333

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  R + ++T V L  G T+V+AG++++++      IP L  +PILG LFR+ RF + E+
Sbjct: 334 PGLRKQSSNTDVNLRPGETLVIAGMVRNEMSGAITKIPGLGDLPILGHLFRSKRFRQRES 393

Query: 409 EIFIAATPFL 418
           E+ +  TP L
Sbjct: 394 EMVVLITPRL 403


>gi|94312586|ref|YP_585795.1| pilus assembly protein [Cupriavidus metallidurans CH34]
 gi|93356438|gb|ABF10526.1| pilus assembly protein [Cupriavidus metallidurans CH34]
          Length = 473

 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 185/379 (48%), Gaps = 39/379 (10%)

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           ++ V V +P  AD          L  K+ G  + +L+      + +L I   RD+A +  
Sbjct: 73  LERVAVGNPEVADA---------LLLKHRGGPSTVLVVARKPGVTDLKIW-SRDVAPVSY 122

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYANSSSKKV 184
           T+R    D+ +R +    +V L     +I  +S  A   + T ++       A+     V
Sbjct: 123 TVR---VDA-VRPDPGGASVDLSSAGASISGESPDAPAAARTLMAARAAVSSADGKRAGV 178

Query: 185 M---NLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSG---PSKSFAADFG- 235
           +   + + ++G  QV +KV   E+ + +LK+IG  F     G + G   PS    A F  
Sbjct: 179 VVDRSTVPVSGTVQVDVKVV--EISKTVLKEIGLNFYRDNGGFAFGTFSPSSLTKATFTP 236

Query: 236 --GKFVSEGGDFS-----VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             G  V      S     + G + +  F   L  +E    +R LAEP+L A+SGQSASF 
Sbjct: 237 GVGTVVDSVSPISSAFNLIAGSVSKGIFAN-LSLMEANGLVRVLAEPSLVALSGQSASFL 295

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGV--N 344
           +GG+ +   V  + G T++    +G+ L  +PTV+S  RI L++  E S+  P  G+  N
Sbjct: 296 AGGE-IPIPVPQALGTTTIQYKPFGIGLTVSPTVMSRERIALKVAPEASDLDPSRGIVLN 354

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+   R+ADTT+EL  G + V+ GL+  +       +P L  +P++G+ F+N  F+
Sbjct: 355 GATVPAIVTRRADTTIELGDGESFVIGGLVSRNTVSNVSKVPFLGDLPVIGSFFKNLNFH 414

Query: 405 REETEIFIAATPFLVKPVA 423
           +E+ E+ I  TP L+KP+A
Sbjct: 415 QEDRELMIVVTPHLIKPLA 433


>gi|194335913|ref|YP_002017707.1| type II and III secretion system protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308390|gb|ACF43090.1| type II and III secretion system protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 510

 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 179/412 (43%), Gaps = 64/412 (15%)

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           ++ V + DP  AD ++ +   +YL GK +G  N+ +   +G  + +  + + R    L+ 
Sbjct: 73  IKRVAMGDPKVADYIMLNRFEVYLLGKKMGSTNLAVWDQNG-NLTSSPVQVSRGTTALQA 131

Query: 126 TLR-RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS---QSGRNQYA---- 177
            L+  F  +++I +  +   +VL G V     ++    L  ++      SG  + A    
Sbjct: 132 LLKVLFPKENDIHLLALGPALVLSGSVSDALVAESVARLVRSYFGGSVSSGTPESALVGT 191

Query: 178 ----------------------------------NSSSKKVMNLLNIAGEDQVTLKVTIA 203
                                             + S++ V+NLL +    QV L+V IA
Sbjct: 192 DSKPFTGIIEEMSKDVVFSKTESHSKETTTHGGESDSTRGVVNLLKVRDSQQVRLEVCIA 251

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           +V R  ++ +G     T      S   +      FVS     ++       +    + A 
Sbjct: 252 QVSRTFIESLGISFFKTSGDIQGSTLLSG-----FVSNATLNNLLLGRLGQANGIKMVAD 306

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YG 313
            + +  + LAEPT+  +SG+   F  GG+             ++  +D          YG
Sbjct: 307 RKPSLFKVLAEPTIVTMSGKEGFFLVGGKIYVPVRVIDYSPINLQEYDKYYISYKEYLYG 366

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           V L F P VL  GRI L++ +EVSEP       G  A ++P +++    T V++  G  +
Sbjct: 367 VGLRFMPVVLDAGRISLKVVSEVSEPDTESATSGTKA-NLPLFKISTVSTNVQMNEGENL 425

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           V+ GL  D+     + +PLLS+IPILGALFR+++ N E+TE+ +   P LVK
Sbjct: 426 VIGGLKLDNFANAIDSVPLLSEIPILGALFRDTKKNAEKTELMVIIRPTLVK 477


>gi|4768955|gb|AAD29695.1| rough colony protein A [Aggregatibacter actinomycetemcomitans]
          Length = 460

 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 182/391 (46%), Gaps = 25/391 (6%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114
           ++Q    +  + VS P  AD  +    T  ++ K  G+  V   G DG+ +    +N+D 
Sbjct: 41  LVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 100

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163
           ++   IA     L+    ++N+ V+ V    V+ G  R+ ++S   +R V        ++
Sbjct: 101 VV-TSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGEARSQEESDEVRRIVGEALGSGRKV 159

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +ET L +             V++  NIA   Q+ +K+++ EV + + + +G   S   + 
Sbjct: 160 TETKLGEDSLPFLDKYHYDDVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHV-AG 218

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           SGP       FGG F    G       LD       ++AL+  +  + LAEP ++ +SG+
Sbjct: 219 SGPLVGGNFGFGGGFNGNQGVLR----LDAKGISAFINALDNQSNGKVLAEPNISMLSGE 274

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           +A    GG+  +       G+ ++   ++G+ L     +    RI L +   VS      
Sbjct: 275 TADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNY 333

Query: 344 N---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           N    G++P +  RKA +  E+ +G + ++ GL   +  +    +PLL  IPILG+ FR+
Sbjct: 334 NFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRS 393

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +   R++ E+ I AT  +VKPV  +D+  PD
Sbjct: 394 ATTERDKKELVIVATVNVVKPVNEKDVVYPD 424


>gi|8096202|dbj|BAA96101.1| unnamed protein product [Actinobacillus actinomycetemcomitans]
          Length = 460

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 182/391 (46%), Gaps = 25/391 (6%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114
           ++Q    +  + VS P  AD  +    T  ++ K  G+  V   G DG+ +    +N+D 
Sbjct: 41  LVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 100

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163
           ++   IA     L+    ++N+ V+ V    V+ G  R+ ++S   +R V        ++
Sbjct: 101 VV-TSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKV 159

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +ET L +             V++  NIA   Q+ +K+++ EV + + + +G   S   + 
Sbjct: 160 TETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHV-AG 218

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           SGP       FGG F    G       LD       ++AL+  +  + LAEP ++ +SG+
Sbjct: 219 SGPLVGGNFGFGGGFNGNQGVLR----LDAKGISAFINALDNQSNGKVLAEPNISMLSGE 274

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           +A    GG+  +       G+ ++   ++G+ L     +    RI L +   VS      
Sbjct: 275 TADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNY 333

Query: 344 N---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           N    G++P +  RKA +  E+ +G + ++ GL   +  +    +PLL  IPILG+ FR+
Sbjct: 334 NFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRS 393

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +   R++ E+ I AT  +VKPV  +D+  PD
Sbjct: 394 ATTERDKKELVIVATVNVVKPVNEKDVVYPD 424


>gi|261867455|ref|YP_003255377.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412787|gb|ACX82158.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 420

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 182/391 (46%), Gaps = 25/391 (6%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114
           ++Q    +  + VS P  AD  +    T  ++ K  G+  V   G DG+ +    +N+D 
Sbjct: 1   MVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 60

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163
           ++   IA     L+    ++N+ V+ V    V+ G  R+ ++S   +R V        ++
Sbjct: 61  VV-TSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKV 119

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +ET L +             V++  NIA   Q+ +K+++ EV + + + +G   S   + 
Sbjct: 120 TETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHV-AG 178

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           SGP       FGG F    G       LD       ++AL+  +  + LAEP ++ +SG+
Sbjct: 179 SGPLVGGNFGFGGGFNGNQGVLR----LDAKGISAFINALDNQSNGKVLAEPNISMLSGE 234

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           +A    GG+  +       G+ ++   ++G+ L     +    RI L +   VS      
Sbjct: 235 TADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNY 293

Query: 344 N---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           N    G++P +  RKA +  E+ +G + ++ GL   +  +    +PLL  IPILG+ FR+
Sbjct: 294 NFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRS 353

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +   R++ E+ I AT  +VKPV  +D+  PD
Sbjct: 354 ATTERDKKELVIVATVNVVKPVNEKDVVYPD 384


>gi|119773845|ref|YP_926585.1| putative type II and III secretion system outermembrane protein,
           secretin [Shewanella amazonensis SB2B]
 gi|119766345|gb|ABL98915.1| putative type II and III secretion system outermembrane protein,
           secretin [Shewanella amazonensis SB2B]
          Length = 423

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 202/412 (49%), Gaps = 49/412 (11%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           +V+ V+V +       V   + + L G++ G +++ L   DG  +  L +++ ++ A   
Sbjct: 28  NVERVVVGNGGVLSAKVLDEKNVILIGESEGLSDIQLWQKDG-TVRKLSVVVTKENAQTT 86

Query: 125 M-TLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDS--QRAVELSETFLSQSGRNQYANSS 180
           + T++R +A+  +I V      +V+HG     Q    ++ ++  +  L      +Y  S 
Sbjct: 87  VGTMKRMLAEFPSIEVTESDGVIVIHGEADASQRETLEKVLDGKDNILPLIKYVKYGKSI 146

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAAD--FG- 235
                       E  V ++V I E  +  L  IG Q    ++G + G +K+F A+  F  
Sbjct: 147 ------------EPMVKMEVKIVEFNKSTLNNIGVQWENVMSGPAFGAAKAFTANPIFSV 194

Query: 236 ---GKFV-SEGGDFS-VKGVLDR--FSFETVLHAL--------ERATAIRTLAEPTLTAI 280
              G++  S GG  S   GVLD   +S+  ++  +        E+  A R LAEP LT  
Sbjct: 195 SSPGQYANSIGGAVSDAIGVLDTRGWSYFGIVTGIGSQIQLLAEKGDA-RMLAEPNLTTR 253

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--E 338
           SG++ASF +GG+   +TVS   G+  +   +YG+ L+  P V +   I  R+  EVS  +
Sbjct: 254 SGEAASFLAGGEIPIRTVSG-VGSVDIQYKEYGIRLNIEPVVDADNNIVSRVMAEVSAVD 312

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           P I +  G  P +  R+ ++ + + +  T+V++GL+  ++ ++    PLL  IPILG LF
Sbjct: 313 PSIQLE-GSAPGFLTRRTESVINVKNKQTMVISGLVNSEMSKVVNKFPLLGDIPILGELF 371

Query: 399 RNSRFNREETEIFIAATPFLVKP---VAMRDLSRPDDHYSVEDDAK--AFFF 445
           ++  F  E+TE+ I  TP +V P      + LSR  +   V+D AK  AF+ 
Sbjct: 372 KSRNFREEKTELVIFVTPTVVYPGEDSHEKSLSRAREL--VDDAAKLEAFYI 421


>gi|307133496|dbj|BAJ19008.1| RcpA [Aggregatibacter actinomycetemcomitans]
          Length = 460

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 182/391 (46%), Gaps = 25/391 (6%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114
           ++Q    +  + VS P  AD  +    T  ++ K  G+  V   G DG+ +    +N+D 
Sbjct: 41  LVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 100

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163
           ++   IA     L+    ++N+ V+ V    V+ G  R+ ++S   +R V        ++
Sbjct: 101 VV-TSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKV 159

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +ET L +             V++  NIA   Q+ +K+++ EV + + + +G   S   + 
Sbjct: 160 TETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHV-AG 218

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           SGP       FGG F    G       LD       ++AL+  +  + LAEP ++ +SG+
Sbjct: 219 SGPLVGGNFGFGGGFNGNQGVLR----LDAKGISAFINALDNQSNGKILAEPNISMLSGE 274

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           +A    GG+  +       G+ ++   ++G+ L     +    RI L +   VS      
Sbjct: 275 TADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNY 333

Query: 344 N---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           N    G++P +  RKA +  E+ +G + ++ GL   +  +    +PLL  IPILG+ FR+
Sbjct: 334 NFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRS 393

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +   R++ E+ I AT  +VKPV  +D+  PD
Sbjct: 394 ATTERDKKELVIVATVNVVKPVNEKDVVYPD 424


>gi|307548787|dbj|BAJ19109.1| RcpA [Aggregatibacter actinomycetemcomitans]
 gi|307548802|dbj|BAJ19123.1| RcpA [Aggregatibacter actinomycetemcomitans]
          Length = 460

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 182/391 (46%), Gaps = 25/391 (6%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114
           ++Q    +  + VS P  AD  +    T  ++ K  G+  V   G DG+ +    +N+D 
Sbjct: 41  LVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 100

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163
           ++   IA     L+    ++N+ V+ V    V+ G  R+ ++S   +R V        ++
Sbjct: 101 VV-TSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKV 159

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +ET L +             V++  NIA   Q+ +K+++ EV + + + +G   S   + 
Sbjct: 160 TETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHV-AG 218

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           SGP       FGG F    G       LD       ++AL+  +  + LAEP ++ +SG+
Sbjct: 219 SGPLVGGNFGFGGGFNGNQGVLR----LDAKGISAFINALDNQSNGKVLAEPNISMLSGE 274

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           +A    GG+  +       G+ ++   ++G+ L     +    RI L +   VS      
Sbjct: 275 TADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNY 333

Query: 344 N---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           N    G++P +  RKA +  E+ +G + ++ GL   +  +    +PLL  IPILG+ FR+
Sbjct: 334 NFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRS 393

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +   R++ E+ I AT  +VKPV  +D+  PD
Sbjct: 394 ATTERDKKELVIVATVNVVKPVNEKDVIYPD 424


>gi|258624763|ref|ZP_05719694.1| Flp pilus assembly protein [Vibrio mimicus VM603]
 gi|258582925|gb|EEW07743.1| Flp pilus assembly protein [Vibrio mimicus VM603]
          Length = 347

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 154/331 (46%), Gaps = 42/331 (12%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS-----------QS 171
           L+ TL     D +I V  V D VVL G V + +   +   L    L            ++
Sbjct: 2   LKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLKKNVSKVNNHVIET 61

Query: 172 GRN------QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           G N      QY A      V+N L +   +Q+ +K+TIAEV    L ++G  +   G   
Sbjct: 62  GENNREEALQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLSELGVSYGDIG--- 118

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                   D G KF ++  DF+ + ++       ++ A       + LAEP L+ ISG++
Sbjct: 119 ------GGDVG-KFYNKLLDFTAQDIV------AIIAASGNDDIGQVLAEPNLSVISGET 165

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           ASF  GG+         T   ++   +YG+ L     V     I L +  EVS  +  VN
Sbjct: 166 ASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLSLLPEVS-SLDSVN 222

Query: 345 AGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
             D      PS + RKA TTV+L  G + VLAGLL  + ++    IP+L  IPILGALF 
Sbjct: 223 RSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPILGDIPILGALFS 282

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           +++ +R++TE+ I AT  LV PV    +  P
Sbjct: 283 STKSDRKKTELIIVATVNLVDPVKTEQVKLP 313


>gi|187478776|ref|YP_786800.1| pilus assembly protein [Bordetella avium 197N]
 gi|115423362|emb|CAJ49896.1| putative pilus assembly protein [Bordetella avium 197N]
          Length = 426

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 154/342 (45%), Gaps = 37/342 (10%)

Query: 85  RTMYLFGKNVGQANV-ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVS 142
           + + LF +  G ++V +  G  G +   L ++      H+   + + +A    +R+ +V 
Sbjct: 67  KEVILFARKEGVSSVHVWRGQSGVRAYALRVM-PAGFGHIRAEVEQLLAAMPALRLSVVG 125

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVT 201
             +V+ G      D QR   L++ +               +V++L    G +Q V L V 
Sbjct: 126 HHLVIEGSGLPDHDKQRISALAQRY--------------PEVLDLTGDVGWEQMVLLDVQ 171

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           + E+ R  L ++G   S+    S P +S A  +G      G     +           L 
Sbjct: 172 VVELPRARLTELGMHWSMGAEGSHPVRSHAGVWG-SLQWSGAAIGAR-----------LQ 219

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL +      LA P L A SG +ASF +GG+  Y+   S     S     YGV L  TP 
Sbjct: 220 ALAQRGEAVFLARPRLLARSGSAASFLAGGEVPYRGAESEA---STVFKPYGVSLKITPR 276

Query: 322 VLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           +   G I   I+ E S  +P + V AG  P+ R R+A+T   +PSG T+VL G L  ++ 
Sbjct: 277 IDPRGTIRSHIEVESSSIDPTLTVPAG--PAMRTRRAETEFNVPSGQTLVLGGFLGRELS 334

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
               G+P LS IP+LG LF   R    +TE+ I  TP +V+P
Sbjct: 335 SETRGVPWLSDIPVLGLLFGERRQQNRDTELAIFVTPTIVRP 376


>gi|73539231|ref|YP_299598.1| type II and III secretion system protein [Ralstonia eutropha
           JMP134]
 gi|72122568|gb|AAZ64754.1| type II and III secretion system protein [Ralstonia eutropha
           JMP134]
          Length = 469

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 128/254 (50%), Gaps = 28/254 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGF--------------------QHSITGSSSGPSKSFAA 232
            + V + V + E+ + +LK++G                     + + T  + G + SF+A
Sbjct: 179 SNTVQVDVKVVEISKTVLKEVGINFFRNNSGFAFGSFSPSTLSKFTFTPGTGGANGSFSA 238

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           D      +    F++        F   +  LE     R LAEP+L A+SGQSASF SGG+
Sbjct: 239 DITTPISNA---FNLVAASLSHGFFANISLLEANGLARVLAEPSLVALSGQSASFLSGGE 295

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PV--IGVNAGDM 348
            +   V  + G T++    +G+ L  +PTVLS  RI L++  E S+  P   I +N   +
Sbjct: 296 -IPIPVPQALGTTTIQFKPFGIGLTVSPTVLSDQRIALKVAPEASDLDPSRGIAINGAIV 354

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+   R+ADTT+EL  G + V+ GL+  +       +P L  +P++G  F+N  F++E+ 
Sbjct: 355 PAIVTRRADTTIELGDGESFVIGGLVSRNTVSNVNKVPFLGDLPVIGPFFKNLNFHQEDR 414

Query: 409 EIFIAATPFLVKPV 422
           E+ I  TP LVKP+
Sbjct: 415 ELMIVVTPRLVKPL 428


>gi|307730006|ref|YP_003907230.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
 gi|307584541|gb|ADN57939.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
          Length = 490

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 186/429 (43%), Gaps = 89/429 (20%)

Query: 66  VQDVLVSDPTKADV-VVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           ++ V + DP+ ADV ++   +T  + L GK+ G  NV+L        L+  + +    A 
Sbjct: 41  LRRVAIGDPSVADVLIIKGDKTGGVLLVGKSPGSTNVMLWEQGKDAPLSYVVNVSSPAA- 99

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ------------ 170
                +  +      V ++ D+ ++ G   T++  QRAV  +     Q            
Sbjct: 100 -----KSLLGPGTPSVRVLGDSALISGSAPTMEAHQRAVAAAAIEARQRATLGTVANSAA 154

Query: 171 ------------------SGRNQYANS-SSKKVMNLLNIAGEDQVTLKVTIA-------- 203
                             SG +  A S ++    +  +  G+ Q+    T+A        
Sbjct: 155 NSAAAGASVGRGGRGTAVSGMSGAAGSDATNGGASFASAMGDAQIYDTSTVATRSVVQVD 214

Query: 204 ----EVRRDILKQIGFQ---------------HSITGSSSGPSKSF------AADFGGKF 238
               E  R +LKQ+G                  +++ ++ GP+ SF      ++ F   F
Sbjct: 215 VRVVEFSRTVLKQVGLNILKQNNGFTFGSFAPSALSSATYGPTPSFNSVAPISSAFNLVF 274

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            S     + +G+    S       +E     R LAEPTL A+SGQSASF +GG+ +   +
Sbjct: 275 NS-----ATRGLFADLSL------MESNNLARILAEPTLVALSGQSASFLAGGE-IPVPI 322

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVR 354
               G TS+    YGV L  TPTVLSP RI L++  E S+      + ++   +P+   R
Sbjct: 323 PQGLGTTSIEYKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAITTR 382

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + DTTVEL  G + V+ GL+  +       +PLL  +P++GA F+   + + + E+ I  
Sbjct: 383 RTDTTVELGDGESFVIGGLIDRETISNVAKVPLLGDLPVIGAFFKQLNYQQNDKELVIIV 442

Query: 415 TPFLVKPVA 423
           TP LV P+A
Sbjct: 443 TPHLVSPLA 451


>gi|255658704|ref|ZP_05404113.1| putative type II/III secretion system protein [Mitsuokella
           multacida DSM 20544]
 gi|260849091|gb|EEX69098.1| putative type II/III secretion system protein [Mitsuokella
           multacida DSM 20544]
          Length = 548

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 188/425 (44%), Gaps = 57/425 (13%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +SI LN+   L    ++  V +++P  ADV +    ++ + G + G   + +   +G + 
Sbjct: 31  LSIDLNQSYYLNTGRNITRVAIANPKIADVSLLDGTSLNVIGISPGTTTLNVWASNGYR- 89

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR---------TI------ 154
               I +    + L   ++  I   ++RV+M+   ++L G V+         TI      
Sbjct: 90  YEYRITVSDQDSGLAKIVQDAIGLPDVRVQMIGGKILLRGTVKNQYERNLAYTIAKLYAK 149

Query: 155 -------QDSQRAVELSETFLSQSGRNQYAN-----------------SSSKKVMNLLNI 190
                  QD  + V  +E+  S +   +Y N                 S+   V+NLL +
Sbjct: 150 GSNSSPSQDQGQYVSTTESKSSMTPDGRYENKTVTNDSYQRTPRDTSGSTGDSVVNLLEM 209

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFGGKFVSE-------G 242
              DQ+ ++    E+     K +G  ++    S   S      D G  +  E       G
Sbjct: 210 TNPDQINIEAMFVELGTSDAKNLGINYASQDMSDTDSSGIKMNDVGTYYAGESYGRQRSG 269

Query: 243 GD--FSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           G+  ++   +   FS     +HAL      R ++ P +T +SG++AS   GG+  Y+  S
Sbjct: 270 GNHWYNSNWLFTHFSKINAEIHALIENGKARVISRPNVTTMSGKNASILIGGEVPYQE-S 328

Query: 300 SSTGATSVTTHDYGVVLH-FTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVR 354
           +  G+T+ +   YG+ +  + PTV   G I   ++T+VS       +  +   MP    R
Sbjct: 329 NGFGSTTTSYKTYGIGIQLWKPTVDQDGNITTELETQVSRLDWNNAVTKDGYRMPGIATR 388

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            A TTV +PSG T+V+ GLL  +     + +PLL  IPILG LF+    +R++TEI +  
Sbjct: 389 SAYTTVNIPSGMTMVIGGLLNSNDANTIQKVPLLGNIPILGELFKYHNKSRQKTEIVVLI 448

Query: 415 TPFLV 419
           TP +V
Sbjct: 449 TPRVV 453


>gi|330873797|gb|EGH07946.1| type II/III secretion system protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 384

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 162/367 (44%), Gaps = 51/367 (13%)

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE-RDIA 121
           PV +  + V DP  ADV V+      L G   G  ++++            + +  R  A
Sbjct: 24  PVAIPRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACATAPRQSMVFVRGRATA 83

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +  T+    AD+ +  ++ +D               R +E+S T L Q+G + +   S+
Sbjct: 84  SMVETVPAPSADAELPSQVQTDI--------------RFIEVSRTKLKQAGTSIFGKGSN 129

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKFVS 240
             +       G       VT+                  G+ SG   S   A+     V 
Sbjct: 130 NFLF------GAPGTVPGVTVTP----------------GTVSGALPSIPLAESAFNIVW 167

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            GG   V G         +L+ALE +    TLA P+L A+SGQSASF +GG+      ++
Sbjct: 168 GGGSSKVLG---------ILNALENSGFAYTLARPSLVALSGQSASFLAGGEFPVPVPNT 218

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356
                S+   ++GV L  TPTV+   RI L++  EVSE      I +    +P  R R+ 
Sbjct: 219 EGNGISIEYKEFGVRLTLTPTVVGRNRILLKVAPEVSELDFTSEISIAGTTVPIIRTRRT 278

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT++ L  G + V++GL+        E  P L  IPILGA FR+S+  R+E E+ +  TP
Sbjct: 279 DTSIALADGESFVVSGLINTSNISTVEKFPGLGDIPILGAFFRSSKIQRDERELLMIVTP 338

Query: 417 FLVKPVA 423
            LV+P+A
Sbjct: 339 HLVQPLA 345


>gi|284048526|ref|YP_003398865.1| type II and III secretion system protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952747|gb|ADB47550.1| type II and III secretion system protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 590

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 177/384 (46%), Gaps = 33/384 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V +P  ADV + S     L GK  G   +++   +G++  N  + +    A     ++  
Sbjct: 49  VGNPEIADVRLLSGNDFLLVGKKPGSTTLLVWSDNGREEYN--VFVSGSDAGTAQAIQEA 106

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL-SQSGRNQYANSSSKK------ 183
           I    ++V+M++  V+L G V+   +   A+++++ +L S  G    A +  K+      
Sbjct: 107 IGYPEVQVQMMNGKVLLRGRVQNQYEHDSAIKVAQMYLGSGGGTTSTAQAGGKEGTAAQG 166

Query: 184 ------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADF 234
                 ++++L++    QV L   I E+     K +G Q+   ++  +++G S S     
Sbjct: 167 GTTDSNIIDMLDMTEPTQVRLVAQIIEINTSAEKDLGIQYWSPTLGDNTTGNSNSTDITR 226

Query: 235 G--GKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASF 287
           G  G F +    +  +G    F     +    L AL  +   R L+ P++T +SGQ A  
Sbjct: 227 GTPGLFYAGENFYKQRGSFGWFGSHLSNLNASLQALVTSGKARILSRPSITTMSGQKAKI 286

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNA 345
             GG+    T S+  G  ++   DYGV L   P V +  +I  ++  EVS    G  V  
Sbjct: 287 LIGGRIPIPT-SAGDGQIAIDWRDYGVKLDIEPVVDADNKITSKVHAEVSTLDYGHSVKE 345

Query: 346 GD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            D  +P+   R+A+  + + SG T+ + GLL  +  +    IPLL  IPI+G  FR++  
Sbjct: 346 NDFSIPAIASREAEAMINVRSGMTMAIGGLLNSEDSKSVSKIPLLGDIPIIGQFFRHTST 405

Query: 404 NREETEIFIAATPFLV---KPVAM 424
            R+  E+ I  TP LV    PV+M
Sbjct: 406 TRDNRELLILITPLLVGDDSPVSM 429


>gi|26000712|gb|AAN75208.1| RcpA [Aggregatibacter actinomycetemcomitans]
          Length = 460

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 181/391 (46%), Gaps = 25/391 (6%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114
           ++Q    +  + VS P  AD  +    T  ++ K  G+  V   G DG+ +    +N+D 
Sbjct: 41  LVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 100

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163
           ++   IA     L+    ++N+ V+ V    V+ G  R+ ++S   +R V        ++
Sbjct: 101 VV-TSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKV 159

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +ET L +             V++  NIA   Q+ +K+++ EV + + + +G   S   + 
Sbjct: 160 TETKLGEDSLPFLDKYHYDDVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHV-AG 218

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           SGP       FGG F    G       LD       ++AL+  +  + L EP ++ +SG+
Sbjct: 219 SGPLVGGNFGFGGGFNGNQGVLR----LDAKGISAFINALDNQSNGKVLPEPNISMLSGE 274

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           +A    GG+  +       G+ ++   ++G+ L     +    RI L +   VS      
Sbjct: 275 TADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNY 333

Query: 344 N---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           N    G++P +  RKA +  E+ +G + ++ GL   +  +    +PLL  IPILG+ FR+
Sbjct: 334 NFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRS 393

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +   R++ E+ I AT  +VKPV  +D+  PD
Sbjct: 394 ATTERDKKELVIVATVNVVKPVNEKDVIYPD 424


>gi|320322730|gb|EFW78823.1| type II/III secretion system protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330485|gb|EFW86464.1| type II/III secretion system protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 416

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 162/367 (44%), Gaps = 51/367 (13%)

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE-RDIA 121
           PV +  + V DP  ADV V+      L G   G  ++++            + +  R  A
Sbjct: 56  PVAITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACATAPRQSMVFVRGRATA 115

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +  T+    AD+ +  ++ +D               R +E+S T L Q+G + +   S+
Sbjct: 116 SMVETVPAPSADAELPSQVQTDI--------------RFIEVSRTKLKQAGTSIFGKGSN 161

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKFVS 240
             +       G       VT+                  G+ SG   S   A+     V 
Sbjct: 162 NFLF------GAPGTVPGVTVTP----------------GTVSGALPSIPLAESAFNIVW 199

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            GG   V G         +L+ALE +    TLA P+L A+SGQSASF +GG+      ++
Sbjct: 200 GGGSSKVLG---------ILNALENSGFAYTLARPSLVALSGQSASFLAGGEFPVPVPNT 250

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356
                S+   ++GV L  TPTV+   RI L++  EVSE      I +    +P  R R+ 
Sbjct: 251 EGNGISIEYKEFGVRLTLTPTVVGRNRILLKVAPEVSELDFTSEISIAGTTVPIIRTRRT 310

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT++ L  G + V++GL+        E  P L  IPILGA FR+S+  R+E E+ +  TP
Sbjct: 311 DTSIALADGESFVVSGLINTSNISTVEKFPGLGDIPILGAFFRSSKIQRDERELLMIVTP 370

Query: 417 FLVKPVA 423
            LV+P+A
Sbjct: 371 HLVQPLA 377


>gi|187926427|ref|YP_001892772.1| type II and III secretion system protein [Ralstonia pickettii 12J]
 gi|241665914|ref|YP_002984273.1| type II and III secretion system protein [Ralstonia pickettii 12D]
 gi|187728181|gb|ACD29345.1| type II and III secretion system protein [Ralstonia pickettii 12J]
 gi|240867941|gb|ACS65601.1| type II and III secretion system protein [Ralstonia pickettii 12D]
          Length = 454

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 129/257 (50%), Gaps = 30/257 (11%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFGGKFVSE- 241
           +N+ G  QV ++V   E  + +LK+ GF    T       +  PS      FG   +S  
Sbjct: 163 MNVPGTVQVDVRVV--EFSKTVLKEAGFTFGRTRGGFDFRTFAPSSLSKVTFGSNGLSTE 220

Query: 242 -----GGDFSV------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                G  F++      KG+    S       LE     R LAEP+L A+SGQSA+F +G
Sbjct: 221 STMPIGSAFNLLVSSVSKGLFADLSL------LESNGMARVLAEPSLVALSGQSANFLAG 274

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346
           G+ +   V  + G T++    +G+ L  +PT+LS  RI L++  E S+      + +N  
Sbjct: 275 GE-IPIPVPQALGTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGA 333

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P+   R+ADTTVEL  G + V+ GL+        + +P L  +PI+G  F+   +N+E
Sbjct: 334 TVPAIVTRRADTTVELGDGESFVIGGLVSRSTLSNVDKVPFLGDVPIIGTFFKRLNYNQE 393

Query: 407 ETEIFIAATPFLVKPVA 423
           E E+ I  TP LVKP+A
Sbjct: 394 ERELVIIVTPHLVKPMA 410


>gi|330963696|gb|EGH63956.1| type III secretion component [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 174

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 94/162 (58%), Gaps = 5/162 (3%)

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340
           ASF +G + +   V  +     +    YGV L F+PT+L  GRI L+++ EVS       
Sbjct: 1   ASFLAGSE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTST 59

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PILG LFR+
Sbjct: 60  LDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRS 119

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
            RF R ETE+ I  TP+LV+PV  R ++ P D       A A
Sbjct: 120 KRFQRNETELVILITPYLVEPVKARVVATPLDKQRAASTASA 161


>gi|170720034|ref|YP_001747722.1| type II and III secretion system protein [Pseudomonas putida W619]
 gi|169758037|gb|ACA71353.1| type II and III secretion system protein [Pseudomonas putida W619]
          Length = 419

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 18/246 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------ 242
           QV   +   EVRR   K+ G +   +GS++    S      G  V+ G            
Sbjct: 136 QVQADIRFVEVRRTKYKEAGARLFFSGSNNSLIGS-PGTVPGTSVTPGAVPVTSPQIPLN 194

Query: 243 -GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G F++        F   ++ALE +    TLA P+LT +SG +ASF +GG+      S+ 
Sbjct: 195 NGVFNIVWGGGSSRFLAAINALENSGFAYTLARPSLTVLSGLTASFLAGGEIPIPVPSAG 254

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKAD 357
           +   S+   ++GV L  TPTV+S  RI L++  EVSE      + +    +P   +R+ D
Sbjct: 255 SDNFSIEYKEFGVRLALTPTVISRDRITLKVAPEVSELDYTNAVTIGGTSVPGLSIRRTD 314

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T++ L  G + +++GL+ ++ +   + +P L  +PILGA FR S   REETE+ +  TP 
Sbjct: 315 TSISLADGESFIISGLVGNNTRSAVDKLPGLGNLPILGAFFRQSALVREETELLMIVTPH 374

Query: 418 LVKPVA 423
           LV+P+A
Sbjct: 375 LVQPLA 380


>gi|309778769|ref|ZP_07673542.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308922477|gb|EFP68101.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 454

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 129/257 (50%), Gaps = 30/257 (11%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFGGKFVSE- 241
           +N+ G  QV ++V   E  + +LK+ GF    T       +  PS      FG   +S  
Sbjct: 163 MNVPGTVQVDVRVV--EFSKTVLKEAGFTFGRTRGGFDFRTFAPSSLSKVTFGSNGLSTE 220

Query: 242 -----GGDFSV------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                G  F++      KG+    S       LE     R LAEP+L A+SGQSA+F +G
Sbjct: 221 STMPIGSAFNLLVSSVSKGLFADLSL------LESNGMARVLAEPSLVALSGQSANFLAG 274

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346
           G+ +   V  + G T++    +G+ L  +PT+LS  RI L++  E S+      + +N  
Sbjct: 275 GE-IPIPVPQALGTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGA 333

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P+   R+ADTTVEL  G + V+ GL+        + +P L  +P++G  F+   +N+E
Sbjct: 334 TVPAIVTRRADTTVELGDGESFVIGGLVSRSTLSNVDKVPFLGDVPVIGTFFKRLNYNQE 393

Query: 407 ETEIFIAATPFLVKPVA 423
           E E+ I  TP LVKP+A
Sbjct: 394 ERELVIIVTPHLVKPMA 410


>gi|152989020|ref|YP_001350207.1| putative type II secretion system protein [Pseudomonas aeruginosa
           PA7]
 gi|150964178|gb|ABR86203.1| probable type II secretion system protein [Pseudomonas aeruginosa
           PA7]
          Length = 408

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 131/245 (53%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQI-------GFQHSITGS--SSGPSKSFA--ADFGGKFVSEG 242
           +QV   +   EV R  LKQ        G    + G+  S G  K  A  +  GG F +  
Sbjct: 124 NQVQTDIRFVEVSRSKLKQASTSFVRRGGNLWVLGAPGSLGDIKVNADGSGLGGTFGAGA 183

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F++  +     + + ++ALE +    TLA P+L A+SGQSASF +GG+      + + 
Sbjct: 184 SGFNL--IFGGGKWLSFMNALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTN 241

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM--PSYRVRKADT 358
              ++   ++G+ L  TPTV++  RI L++  EVSE     G+ +G +  P+ RVR+ DT
Sbjct: 242 DNVTIEYKEFGIRLTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDT 301

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +V L  G + V++GL   +     +  P L  IPILGA FR+++ ++++ E+ +  TP L
Sbjct: 302 SVMLADGESFVISGLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHL 361

Query: 419 VKPVA 423
           V+P+A
Sbjct: 362 VQPLA 366


>gi|330811024|ref|YP_004355486.1| type II secretion system protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379132|gb|AEA70482.1| putative type II secretion system protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 407

 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 4/169 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +++ALE +    TLA P+L A+SGQSASF +GG+      S+ +   S+   ++G+ L  
Sbjct: 200 MINALEGSGFAYTLARPSLVALSGQSASFLAGGEVPIPVPSAGSDNVSIEYKEFGIRLTL 259

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      + +    +P+  VR+ DT++ L  G + V++GL+
Sbjct: 260 TPTVIGKNRIALKVAPEVSELDFTNAVNIAGTLVPALTVRRTDTSIALADGESFVISGLI 319

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                      P L  IPILGA FR++  NREE E+ +  TP LV+P+A
Sbjct: 320 STRNSSQVNKFPGLGDIPILGAFFRDNSINREERELLMIVTPHLVQPLA 368


>gi|107100112|ref|ZP_01364030.1| hypothetical protein PaerPA_01001133 [Pseudomonas aeruginosa PACS2]
          Length = 408

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 107/180 (59%), Gaps = 5/180 (2%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           + + ++ALE +    TLA P+L A+SGQSASF +GG+      + +    ++   ++G+ 
Sbjct: 195 WLSFMNALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIR 254

Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371
           L  TPTV++  RI L++  EVSE     G+ +G +  P+ RVR+ DT+V L  G + V++
Sbjct: 255 LTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVIS 314

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL   +     +  P L  IPILGA FR+++ ++++ E+ +  TP LV+P+A  D   PD
Sbjct: 315 GLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAA-DAQLPD 373


>gi|149927033|ref|ZP_01915291.1| type II/III secretion system protein [Limnobacter sp. MED105]
 gi|149824254|gb|EDM83474.1| type II/III secretion system protein [Limnobacter sp. MED105]
          Length = 473

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 125/409 (30%), Positives = 184/409 (44%), Gaps = 60/409 (14%)

Query: 50  ISIGLNKVIILQ-VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG--------QANVI 100
           +S G  KVI L  +P  V    + DPT A V V  P      GKN G         +  +
Sbjct: 47  LSTGFQKVISLPGIPARVS---IGDPTIASVTVLKPTDRG--GKNAGVLVTGLKTGSTSL 101

Query: 101 LIGHDGKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           LI   G  M   + + +    A    TL+    D N+  E     + L G    +   Q+
Sbjct: 102 LIWDRGASMARVITVSVTGKAAETISTLK----DLNLETE--GQVLKLSGSTPNVSTYQQ 155

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----- 214
           A E     L + G    ++    ++++   I     V + V + E  R  L+++G     
Sbjct: 156 ARE----SLIKPG----SDGKPAELIDQATIQTSGTVQVDVKVVEFTRSELQRLGINLTG 207

Query: 215 ------FQHSITGSSS-----GPSKSFAADF-GGKFVSEG--GDFSVKGVLDR-FSFETV 259
                 F +SI G +S     G S +F+  F G   V E   G  +   V  R     + 
Sbjct: 208 QVNGGGFTYSIAGPASVSGSGGVSNAFSLAFNGAGCVGEAVIGALNPTPVGPRTCDLVSG 267

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L+ L+     + LAEP+L A SGQ ASF +GG+ +   V S  G   +    +GV L FT
Sbjct: 268 LNILQADGYAKVLAEPSLIAQSGQDASFLAGGE-IPIPVPSGNGTIGIEYKKFGVGLSFT 326

Query: 320 PTVLSPGRIGLRIQTEVSE-------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           PT+LS   I LR+  EVS+        + GV    +P+   R+A TTVEL    + V+ G
Sbjct: 327 PTILSNKTIALRVSPEVSDLDFSRGTSIQGV---LVPAILTRRASTTVELGENQSFVIGG 383

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L+  +I      +P LS+IPILGA F+ + ++RE+ E+ I  TP  VKP
Sbjct: 384 LISRNIIANANRVPWLSEIPILGAFFKGNTYSREDKELLIIVTPRFVKP 432


>gi|71735124|ref|YP_276550.1| type II/III secretion system protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555677|gb|AAZ34888.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 416

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 158/366 (43%), Gaps = 49/366 (13%)

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           PV +  + V DP  ADV V+      L G   G  + +++           ++  R  A 
Sbjct: 56  PVAITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTS-LMVWTACATAPRQSMVFVRGRAT 114

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
             M            VE V        +   +Q   R +E+S T L Q+G + +   S+ 
Sbjct: 115 TSM------------VETVPAPSADAELPSQVQTDIRFIEVSRTKLKQAGTSIFGKGSNN 162

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKFVSE 241
            +       G       VT+                  G+ SG   S   A+     V  
Sbjct: 163 FLF------GAPGTVPGVTVTP----------------GTVSGALPSIPLAESAFNIVWG 200

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           GG   V G+L         +ALE +    TLA P+L A+SGQSASF +GG+      ++ 
Sbjct: 201 GGSSKVLGIL---------NALENSGFAYTLARPSLVALSGQSASFLAGGEFPVPVPNTE 251

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKAD 357
               S+   ++GV L  TPTV+   RI L++  EVSE      I +    +P  R R+ D
Sbjct: 252 GNGISIEYKEFGVRLTLTPTVVGRNRILLKVAPEVSELDFTSEISIAGTTVPIIRTRRTD 311

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T++ L  G + V++GL+        E  P L  IPILGA FR+S+  R+E E+ +  TP 
Sbjct: 312 TSIALADGESFVVSGLINTSNISTVEKFPGLGDIPILGAFFRSSKIQRDERELLMIVTPH 371

Query: 418 LVKPVA 423
           LV+P+A
Sbjct: 372 LVQPLA 377


>gi|116052338|ref|YP_792649.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587559|gb|ABJ13574.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 416

 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 107/180 (59%), Gaps = 5/180 (2%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           + + ++ALE +    TLA P+L A+SGQSASF +GG+      + +    ++   ++G+ 
Sbjct: 203 WLSFMNALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIR 262

Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371
           L  TPTV++  RI L++  EVSE     G+ +G +  P+ RVR+ DT+V L  G + V++
Sbjct: 263 LTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVIS 322

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL   +     +  P L  IPILGA FR+++ ++++ E+ +  TP LV+P+A  D   PD
Sbjct: 323 GLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAA-DAQLPD 381


>gi|313106823|ref|ZP_07793035.1| RcpA [Pseudomonas aeruginosa 39016]
 gi|310879537|gb|EFQ38131.1| RcpA [Pseudomonas aeruginosa 39016]
          Length = 416

 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 107/180 (59%), Gaps = 5/180 (2%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           + + ++ALE +    TLA P+L A+SGQSASF +GG+      + +    ++   ++G+ 
Sbjct: 203 WLSFMNALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIR 262

Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371
           L  TPTV++  RI L++  EVSE     G+ +G +  P+ RVR+ DT+V L  G + V++
Sbjct: 263 LTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVIS 322

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL   +     +  P L  IPILGA FR+++ ++++ E+ +  TP LV+P+A  D   PD
Sbjct: 323 GLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAA-DAQLPD 381


>gi|218893396|ref|YP_002442265.1| RcpA [Pseudomonas aeruginosa LESB58]
 gi|254239026|ref|ZP_04932349.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719]
 gi|296391003|ref|ZP_06880478.1| putative type II secretion system protein [Pseudomonas aeruginosa
           PAb1]
 gi|126170957|gb|EAZ56468.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719]
 gi|218773624|emb|CAW29438.1| RcpA [Pseudomonas aeruginosa LESB58]
          Length = 416

 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 107/180 (59%), Gaps = 5/180 (2%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           + + ++ALE +    TLA P+L A+SGQSASF +GG+      + +    ++   ++G+ 
Sbjct: 203 WLSFMNALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIR 262

Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371
           L  TPTV++  RI L++  EVSE     G+ +G +  P+ RVR+ DT+V L  G + V++
Sbjct: 263 LTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVIS 322

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL   +     +  P L  IPILGA FR+++ ++++ E+ +  TP LV+P+A  D   PD
Sbjct: 323 GLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAA-DAQLPD 381


>gi|15599500|ref|NP_252994.1| RcpA [Pseudomonas aeruginosa PAO1]
 gi|254244885|ref|ZP_04938207.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192]
 gi|9950526|gb|AAG07692.1|AE004846_9 RcpA [Pseudomonas aeruginosa PAO1]
 gi|126198263|gb|EAZ62326.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192]
          Length = 416

 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 107/180 (59%), Gaps = 5/180 (2%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           + + ++ALE +    TLA P+L A+SGQSASF +GG+      + +    ++   ++G+ 
Sbjct: 203 WLSFMNALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIR 262

Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371
           L  TPTV++  RI L++  EVSE     G+ +G +  P+ RVR+ DT+V L  G + V++
Sbjct: 263 LTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVIS 322

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL   +     +  P L  IPILGA FR+++ ++++ E+ +  TP LV+P+A  D   PD
Sbjct: 323 GLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAA-DAQLPD 381


>gi|83749638|ref|ZP_00946621.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551]
 gi|83723699|gb|EAP70894.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551]
          Length = 401

 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 150/308 (48%), Gaps = 34/308 (11%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++++ + K  ++Q+P  V++  V +P     ++ SP+T+YL G+ VG  N+I+ G  G  
Sbjct: 99  EVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVSPQTLYLLGQEVGTTNMIVQGRSGSC 158

Query: 109 MLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + +D+ +  D   L+ TLR  +  + N++V   +D++VL G V     +Q+ ++++  F
Sbjct: 159 SV-IDVSVGADPGGLQSTLRTLMPGAKNVQVSAAADSLVLGGSVSDSVQAQKVLDIANAF 217

Query: 168 LSQSGRNQY----------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           +    R                         A   S +++N++ +    QV L+V +AEV
Sbjct: 218 VMHQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPRSPRIINMMAVEAPQQVMLEVKVAEV 277

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            + ++ Q+G   ++ G+    S +F A     F+S   D       +    +  L A + 
Sbjct: 278 SKTLIDQMGSALNVNGAFG--SWTFGAL--ANFLSGSNDIVNFSKNNHLPLKFALDAQKG 333

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTP 320
              ++ LAEP+L AISGQ ASF +GG+ ++  VS       V         +GV L FTP
Sbjct: 334 DGLVKVLAEPSLMAISGQEASFLAGGK-VFIPVSQGAATNGVANIILXEETFGVGLRFTP 392

Query: 321 TVLSPGRI 328
           TV+  GRI
Sbjct: 393 TVMEKGRI 400


>gi|238027562|ref|YP_002911793.1| type II and III secretion system protein [Burkholderia glumae BGR1]
 gi|237876756|gb|ACR29089.1| Type II and III secretion system protein [Burkholderia glumae BGR1]
          Length = 476

 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 95/168 (56%), Gaps = 5/168 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L  LE+    R LA+PTL A+SGQSA+F +GG+ +   V  + G  S+    YG+ L   
Sbjct: 271 LSILEQNNLARILAQPTLVALSGQSANFLAGGE-IPVPVPQALGTVSIEWKPYGIGLTVA 329

Query: 320 PTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PTVL P RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ GL+ 
Sbjct: 330 PTVLGPNRIALKVAPEASQLDFVNAITINGVTVPALTTRRADTTVELGDGESYVIGGLVD 389

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            +       +P L  +PI+GA F++  + + + E+ I  TP LV P+A
Sbjct: 390 RETTSNLSKVPFLGDLPIIGAFFKSLSYQQNDKELVIIVTPHLVSPIA 437


>gi|257487974|ref|ZP_05642015.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 170

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 84/135 (62%), Gaps = 4/135 (2%)

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           YGV L F+PT+L  GRI L+++ EVS       + VN   +PS+RVR+ADT VE+ SG T
Sbjct: 23  YGVSLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQT 82

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
             +AGL + +  Q  + +P+L  +PILG LFR+ RF R ETE+ I  TP+LV+PV  R +
Sbjct: 83  FAIAGLFQRESSQDMDKVPMLGDMPILGNLFRSKRFQRNETELVILITPYLVEPVKDRVV 142

Query: 428 SRPDDHYSVEDDAKA 442
           + P D       A A
Sbjct: 143 ATPLDKQRAASTASA 157


>gi|325108834|ref|YP_004269902.1| type II and III secretion system protein [Planctomyces brasiliensis
           DSM 5305]
 gi|324969102|gb|ADY59880.1| type II and III secretion system protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 736

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 183/425 (43%), Gaps = 49/425 (11%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
           +A ++++  VE    +K+ + LN+  +++    V  + ++DPT  D+         + G 
Sbjct: 58  DARIVSMPQVE----RKLELVLNRSQLVKTRSRVTRMAIADPTVIDIAPFEEDEFAIIGT 113

Query: 93  NVGQANVILIGHDGKQML----------NLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
            +G   + L   +    L          N++  +  D   LE  +     +S + +  + 
Sbjct: 114 AIGSTTLTLWFENDDNPLIYEVTVIDDPNVEEQLRIDYGKLERKIAILFPNSKVYLIPLH 173

Query: 143 DTVVLHGMVRTIQDSQRAVELSE-TFLSQSG-----------------------RNQYAN 178
           + +V+ G  +   ++ R +++    FL   G                            +
Sbjct: 174 EKLVVKGQAKDAAEAARILQIVRGEFLDDYGGLYGPNGGAGRGGGGGGGYDDDGIRDEDD 233

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
             S  ++N+L + GE QV L VTIAE+ R  L+++G   ++  ++          F G  
Sbjct: 234 LYSSFIVNMLQVPGEYQVMLHVTIAELNRSQLRRMGVDFAVLFAN-------GQHFIGST 286

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           +S GG  ++ G+ +      +++AL      + L+ P+LT +SG  A F +GG+    T 
Sbjct: 287 IS-GGVPTLTGIFNNGDISVLINALASNGTAKILSRPSLTTLSGHPAQFLAGGEFAVPTT 345

Query: 299 SSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
               G   TS     +G  +   PTV+      LRI  E S+     + G +P    R+ 
Sbjct: 346 VGVGGVQGTSTQFRGFGTSMVVVPTVVDGDLFRLRIAPEFSQINQNNSVGGIPGLDSRRV 405

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL-FRNSRFNREETEIFIAAT 415
            TTVEL  G TIVL GLL          IPLL +IP++G L F   R   +E E+ +  T
Sbjct: 406 QTTVELREGQTIVLGGLLSRQTASEVTRIPLLGEIPLIGPLMFNTKRATEDELELLVLVT 465

Query: 416 PFLVK 420
           P +V+
Sbjct: 466 PEIVR 470


>gi|222111308|ref|YP_002553572.1| type II and iii secretion system protein [Acidovorax ebreus TPSY]
 gi|221730752|gb|ACM33572.1| type II and III secretion system protein [Acidovorax ebreus TPSY]
          Length = 356

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 160/344 (46%), Gaps = 38/344 (11%)

Query: 103 GHDGKQMLNLDILIERDI-AHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
             +G Q +N ++ +  D  A   M LR+ ++ D  I V  V D VVL GM    QDS   
Sbjct: 4   ARNGTQ-INYEVTVSADHHAKTAMELRQLLSHDKGINVSAVGDKVVLDGMYAN-QDS--- 58

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-------VTLKVTIAEVRRDILKQI 213
                     + + Q    +  +V+NL+    EDQ       V L V + EVR+  L  I
Sbjct: 59  ----------AAKIQKIVKAYPQVLNLVRERPEDQLVVPEQMVQLDVKVVEVRKQALDNI 108

Query: 214 GFQHSITG------SSSGPSKSFAADFGGKFVSEGGDFS--VKGVLDRFSFET----VLH 261
           G + S  G      ++SG   + +A+F G    EG   +   +  +      T    VL+
Sbjct: 109 GVKWSNLGVAGPTFATSGYFYANSANFRG-LNQEGYPITTPARPFISYLGLATQITSVLN 167

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
            LE      TLAEP ++++SG S+    GG+ +   VSS  G  SV    YGV+L F P 
Sbjct: 168 FLESNGDSWTLAEPRISSVSGGSSKVQVGGE-IPIPVSSGFGQLSVVYKPYGVILEFKPV 226

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +   G +   I  EVS+P      G   ++   + +T V L    T+V++GLLK    + 
Sbjct: 227 IDKAGNVRSSIVAEVSQPDRSAGQGQFVAFTTNRTETEVSLKQNETLVISGLLKSVGARN 286

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           KEGIP++ + P+LG LF       E+TE+ +  TP +  P A R
Sbjct: 287 KEGIPVIGRAPVLGRLFSTQEMTNEQTEMLVVVTPRIHTPAADR 330


>gi|92113782|ref|YP_573710.1| type II and III secretion system protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91796872|gb|ABE59011.1| type II and III secretion system protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 483

 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 125/255 (49%), Gaps = 24/255 (9%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGF---------------QHSITGSSSGPSKSFAADF-- 234
           G  QV   + + EV R  L+  GF                    G +     SF+  F  
Sbjct: 187 GPVQVQTDIRVVEVNRSKLQSAGFFFGKNNGGNTLIGVGTSGALGGAEAVGDSFSEGFSF 246

Query: 235 --GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
             G  F +  G +++       S   V+ AL       TLAEP+L  +SGQSASF +GG+
Sbjct: 247 LTGSGFQTGNGGYNIVVGNANDSVLGVISALRSNGFAYTLAEPSLVTLSGQSASFLAGGE 306

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDM-- 348
             +  VS+  G   +   ++GV L  TPTVL    I L++  EVSE     GV A  +  
Sbjct: 307 FPFP-VSNDDGDVRIDFKEFGVRLQLTPTVLDSNSIMLKVAPEVSELDFTQGVEASGVAV 365

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+  VR+ DT+V+L  G +++++GL+ +   Q  +  P L  +P++GA FR++RF  +  
Sbjct: 366 PALNVRRTDTSVQLGDGESLIISGLVSNSTMQTVDKFPGLGDLPVIGAFFRSTRFETQNK 425

Query: 409 EIFIAATPFLVKPVA 423
           E+ +  TP LV P+A
Sbjct: 426 ELVMIVTPHLVAPMA 440


>gi|299069498|emb|CBJ40767.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
           CMR15]
          Length = 467

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 177/389 (45%), Gaps = 61/389 (15%)

Query: 66  VQDVLVSDPTKADVVV----HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           ++ + + +P  AD ++     +  ++ +  K  G AN IL+   G   L  ++ ++ +  
Sbjct: 65  LERIAIGNPEVADALLLKGHGAAGSLLIIAKKPGAAN-ILVWTQGGTALTYNVQVDAE-- 121

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA---VELSETFLSQSGRNQYAN 178
                  R     ++ V+    T VL G V+ +    RA     ++       G N   N
Sbjct: 122 ------PRGAGSPDLAVQ--GSTAVLTGQVKDVYSLARARKSAAVAGGAEPPKGGNMIDN 173

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF--------------------QHS 218
           ++       L + G  QV ++V   E  + +LK+ GF                    Q++
Sbjct: 174 TT-------LAVPGTVQVDVRVV--EFSKTVLKEAGFIFTRTRGGFTFGSFSPSTLTQYT 224

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           +T +S   +       G  F      FS KG+    S       +E     R LAEP+L 
Sbjct: 225 VTPTSL--TTQSTTPIGTAFNLLISSFS-KGIFADLSL------IESNGLARVLAEPSLV 275

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           A+SGQSA+F +GG+ +   V  + G T++    +G+ L  +PT+LS  RI L++  E S+
Sbjct: 276 ALSGQSANFLAGGE-IPIPVPQALGTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASD 334

Query: 339 ----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                 + +N   +P+   R+ADTTVEL  G + V+ GL+        + +P L  +PI+
Sbjct: 335 LDFSRGVTLNGATVPAIVTRRADTTVELGDGESFVIGGLVSRTTLSNVDKVPFLGDVPII 394

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVA 423
           G  F+   +N+EE E+ I  TP LV+P+A
Sbjct: 395 GTFFKRLDYNQEERELVIIVTPRLVRPMA 423


>gi|294146464|ref|YP_003559130.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
 gi|292676881|dbj|BAI98398.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
          Length = 385

 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/251 (35%), Positives = 120/251 (47%), Gaps = 21/251 (8%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSEGGDF 245
           AGE  V + V  A V    LK +GF  S     I G+   PS   +A F    ++     
Sbjct: 95  AGEQVVAVDVQFAAVSATTLKALGFNFSKLSGDIQGAIVSPSSLGSASFNPDGLALEASA 154

Query: 246 SVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-- 297
            ++   + F          VL AL      + LA+PTL   SG+ ASF +GG+       
Sbjct: 155 PIQNAFNLFLSAPNRGIGAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEFPVPVPQ 214

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------MPSY 351
           VS S    S+   ++GV L  TP VLS   I L+I  EVSE  +  N G       +P  
Sbjct: 215 VSGSGNTLSIQYKEFGVRLSVTPFVLSKDHIVLKIAPEVSE--LDYNNGVQLQGYVVPGL 272

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           R R A+TTVEL SG + V+AGL        KE  PL   IP+LGA F+  +  +E+ E+ 
Sbjct: 273 RRRSAETTVELGSGQSFVIAGLSYSSQTVTKEKTPLFGDIPVLGAFFKRQQNQKEKQELI 332

Query: 412 IAATPFLVKPV 422
           I ATP LV P+
Sbjct: 333 IVATPRLVGPM 343


>gi|52425834|ref|YP_088971.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307886|gb|AAU38386.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 458

 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 182/398 (45%), Gaps = 40/398 (10%)

Query: 53  GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM--- 109
           G +K I L   +D   + VS    AD  +    +  ++GK  G  +V     +G  +   
Sbjct: 26  GTSKYIELDKKIDT--IFVSSSEVADYEIVDDYSFMVYGKQEGTTDVTAFDANGNILYTD 83

Query: 110 -LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR--------- 159
            LN++ LI  +I      ++    +SN++V+ +    V+ G   T  +S+          
Sbjct: 84  TLNVNALI-NNIVDTNKQIKARFPNSNLQVKKLGKAYVIEGKANTQHESEEVNRIVGEAI 142

Query: 160 --AVELSETFLSQSG---------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             A +++ET L +            ++Y  +    V+N  NI    Q+ +K+T+AEV ++
Sbjct: 143 GVAPKVTETTLKRGNGMSDEKIPFLDKYEYNG---VINNTNIDKTKQINVKLTVAEVNKN 199

Query: 209 ILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               +G  ++H ++GS      S A  + G F    G  ++   ++       + A+  A
Sbjct: 200 FSDSLGIKWEH-LSGSVLENWTSGANGYSGGFDGTTGSIAL---INANRLSAFITAVNNA 255

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + LAEP ++ +SG++A    GG+  +     S G TS+   D+GV L     V    
Sbjct: 256 NNGKILAEPNISMLSGETADILVGGEVPFAQ-RDSDGNTSIIYKDFGVKLMVGAKVQKND 314

Query: 327 RIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           ++ + +  EVS         + GD+P ++ R+A +T E+ +G + ++ GLL     +   
Sbjct: 315 QVRIVLAQEVSTLAGNYTYTSVGDIPYFQTRRAKSTFEVGNGESFIIGGLLSSSDLEGVS 374

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            +PL   IPILGA FR+   +RE  E+ + AT  LV P
Sbjct: 375 KVPLFGDIPILGAFFRSVTTSRETKELVVVATVNLVTP 412


>gi|298488959|ref|ZP_07006982.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156457|gb|EFH97554.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 416

 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L+A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                      P L  IPILGA FRNS+  R+E E+ +  TP LV+P+A
Sbjct: 329 SSSNVGSVSKFPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLA 377


>gi|331092898|ref|ZP_04586842.2| type II and III secretion system protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021233|gb|EGI01290.1| type II and III secretion system protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 416

 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 99/170 (58%), Gaps = 4/170 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L+A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I ++   +P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITISGTTVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
                   +  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A+
Sbjct: 329 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAV 378


>gi|269960458|ref|ZP_06174830.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834535|gb|EEZ88622.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 226

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 101/186 (54%), Gaps = 12/186 (6%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP+LTA+SG  A F +GG+     V +  G T +   +YGV L F P +LS  RI L+
Sbjct: 2   LAEPSLTALSGTQAEFVAGGEFPIP-VPNDDGIT-IDYKEYGVQLDFVPYILSDKRINLK 59

Query: 332 IQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +   VSE     V+  N  +      +P    R A TT+EL  G TI +AGLL ++ + +
Sbjct: 60  MNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLSENARNV 119

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
            +GIP  S +P+LG LF++  F   ETE+ I  TP L  P+  R ++ P D +   +D +
Sbjct: 120 ADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGFVSPNDVE 179

Query: 442 AFFFNR 447
            +   +
Sbjct: 180 FYLLGK 185


>gi|260914312|ref|ZP_05920781.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella
           dagmatis ATCC 43325]
 gi|260631413|gb|EEX49595.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella
           dagmatis ATCC 43325]
          Length = 465

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 181/400 (45%), Gaps = 41/400 (10%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114
           ++Q    +  + VS P  AD  +    +  ++ K  G+A +     +GK +    +N+D 
Sbjct: 42  LIQTKEKIDTIFVSSPAIADYEILDDNSFIIYAKEQGRAEISAFDANGKTLTNDVVNVDS 101

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR- 173
           L    I+     ++    ++N+ V+ V    V+ G  R+ ++S     +    L    + 
Sbjct: 102 LF-TGISDTNQQIKARFPNTNLSVKKVGKAYVIEGKARSQEESDEVHRIVGEALGNGKKV 160

Query: 174 --NQYANSSSKK------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS- 218
              ++    S++            V+N +N+    Q+ +K+T+ EV + + + +G   S 
Sbjct: 161 TETKFKAGESEESLPFLDKYQFDGVVNNVNVDETTQINVKLTVVEVNKKLSEAVGINWSR 220

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPT 276
           ++G           D  G      G   ++G+L  D       ++AL+     R LAEP 
Sbjct: 221 LSGG--------VPDLLGGVSRVTGFDGIQGLLKIDASGVSAFINALDNQNNGRILAEPN 272

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ++ +SG++A    GG+  +       GA ++   D+G+ L     +    RI L +   V
Sbjct: 273 ISMLSGETADILVGGEIPFAQ-RDKEGAPTIIYKDFGIRLAVAAKLQKNNRIRLALDQRV 331

Query: 337 SEPVIGVN-----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSK 390
           S   I  N      G++P +  R++ +  E+  G + ++ GL    D++ + + +P+L  
Sbjct: 332 S--TIAGNYSFESVGEIPFFNTRRSKSVFEVADGESFIIGGLFNSSDLEGINK-VPVLGD 388

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           IPILGA FRN++ +RE+ E+ I AT   VKPV   ++  P
Sbjct: 389 IPILGAFFRNAKTDREDRELVIVATVNTVKPVQEDEIVYP 428


>gi|330887974|gb|EGH20635.1| type II and III secretion system protein [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 416

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L+A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                      P L  IPILGA FRNS+  R+E E+ +  TP LV+P+A
Sbjct: 329 SSSNVGSVGKFPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLA 377


>gi|300697742|ref|YP_003748403.1| pilus assembly protein (cpaC) [Ralstonia solanacearum CFBP2957]
 gi|299074466|emb|CBJ54016.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
           CFBP2957]
          Length = 462

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 5/168 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L  +E     R LAEP+L A+SGQSA+F +GG+ +   V  + G T++    +G+ L  +
Sbjct: 252 LSLIESNGLARVLAEPSLVALSGQSANFLAGGE-IPIPVPQALGTTTIEYKPFGIGLTVS 310

Query: 320 PTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PT+LS  RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ GL+ 
Sbjct: 311 PTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFVIGGLVS 370

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                  + +P L  +PI+G+ F+   +N+EE E+ I  TP LV+P+A
Sbjct: 371 RTTLSNVDKVPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMA 418


>gi|330989176|gb|EGH87279.1| type II and III secretion system protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 416

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L+A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                      P L  IPILGA FRNS+  R+E E+ +  TP LV+P+A
Sbjct: 329 SSSNVGSVGKFPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLA 377


>gi|289625312|ref|ZP_06458266.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647837|ref|ZP_06479180.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867146|gb|EGH01855.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330871034|gb|EGH05743.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 416

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L+A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                      P L  IPILGA FRNS+  R+E E+ +  TP LV+P+A
Sbjct: 329 SSSNVGSVGKFPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLA 377


>gi|320101627|ref|YP_004177218.1| type II and III secretion system protein [Isosphaera pallida ATCC
           43644]
 gi|319748909|gb|ADV60669.1| type II and III secretion system protein [Isosphaera pallida ATCC
           43644]
          Length = 712

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 139/331 (41%), Gaps = 58/331 (17%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ------HSITGSSSGP-------- 226
           S +++N L + G  Q+ LKV +AE+ R  +++IG        +S+ GS  G         
Sbjct: 347 SPQIINRLRVPGPRQILLKVKLAELNRTAIREIGANWLRGRNNSLIGSQIGGIAGFTTET 406

Query: 227 ----SKSFAADFGGKFVSEGGD-----------------------------FSVKGVLDR 253
               + +FAA   G+    GG                                + G+   
Sbjct: 407 NTQMTAAFAAPSFGRPGIAGGQPIPGSVTGSLIQGIDTLLNATAGSALQPSAQLFGIFRA 466

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSV 307
             F+  L+AL        LAEP LTA+ GQ A   +GG+       L           ++
Sbjct: 467 GEFDLFLNALRTNNLATILAEPNLTALDGQPARVIAGGEIPFPVPQLGAGGGGGGAVITI 526

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELP 363
               +G +L F P +L    I L ++   S P  G    +N   +P +  R A T V+L 
Sbjct: 527 QFRPFGAILTFLPQILEDDLIRLDVEPVFSTPNQGLGTSINGTAVPGFNTRSARTVVQLR 586

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G T+ +AGL++ + Q     IPLL   PI+G LF  +RF   ETE+ +  TP+L+ P+ 
Sbjct: 587 EGETLAIAGLIQKNNQAATNRIPLLGDAPIVGPLFSRNRFETLETELIVIVTPYLIAPMG 646

Query: 424 MRDLSR-PDDHYSVEDDAKAFFFNRVNKIYG 453
             ++ + P D+    +D + F   R     G
Sbjct: 647 EGEVPKVPTDYVDEPNDIEFFILGRTEGKTG 677


>gi|300694111|ref|YP_003750084.1| pilus assembly protein (cpac) [Ralstonia solanacearum PSI07]
 gi|299076148|emb|CBJ35461.2| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
           PSI07]
          Length = 462

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 6/171 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L  +E     R LAEP+L A+SGQSA+F +GG+ +   V  + G T++    +G+ L  +
Sbjct: 252 LSLIESNGLARVLAEPSLVALSGQSANFLAGGE-IPIPVPQALGTTTIEYKPFGIGLTVS 310

Query: 320 PTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PT+LS  RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ GL+ 
Sbjct: 311 PTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFVIGGLVS 370

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
                  + +P L  +P++G+ F+   +N+EE E+ I  TP LV+P+A RD
Sbjct: 371 RTTLSNVDKVPFLGDVPVIGSFFKRLDYNQEERELVIIVTPHLVRPMA-RD 420


>gi|54302288|ref|YP_132281.1| putative pilus assembly transmembrane protein [Photobacterium
           profundum SS9]
 gi|46915710|emb|CAG22481.1| putative pilus assembly transmembrane protein [Photobacterium
           profundum SS9]
          Length = 217

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 101/184 (54%), Gaps = 14/184 (7%)

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           AISG+ A F SGG+      +      ++   ++GV L F PTV+S   I L +  EVSE
Sbjct: 2   AISGEEAEFISGGEFPIPVPNDEN--ITIEFKEFGVALKFIPTVMSADSINLALNIEVSE 59

Query: 339 PVIGVNAGDM-----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            +   NA  +           PS   R A TTVEL +G TI +AGLL ++I  + E +P 
Sbjct: 60  -ISNQNAVSIRPSGTNTQFFVPSLSKRGAKTTVELGNGQTIGIAGLLNENITDVVEKLPG 118

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  +PI+G LFR+  F + ETE+ I  TP L KPV  +D++ P D++   +D + +   R
Sbjct: 119 LGDLPIIGQLFRSQSFRKGETELVILVTPRLAKPVRKQDITLPTDNFVEPNDWEYYLLGR 178

Query: 448 VNKI 451
           ++++
Sbjct: 179 MSEL 182


>gi|160897515|ref|YP_001563097.1| type II and III secretion system protein [Delftia acidovorans
           SPH-1]
 gi|160363099|gb|ABX34712.1| type II and III secretion system protein [Delftia acidovorans
           SPH-1]
          Length = 492

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 103/187 (55%), Gaps = 15/187 (8%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G  FS  G++ + S       LE     R LA PTL A +GQ+ASF +GG+ L   V + 
Sbjct: 272 GKAFSGAGIVTQLSI------LEGNGMARVLARPTLLAQTGQNASFLAGGE-LPIPVPAR 324

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRK 355
            G  ++   ++G+ L  TPT+LS  RI L++  E S+  +  N+G       +P+ R R+
Sbjct: 325 DGNIAIQYKEFGIKLQLTPTILSDDRIALKVSPEASD--LDFNSGVTISGVTVPAIRTRR 382

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ADT+VEL  G + V+ GL+          +P+L  +PILG  F+N  + +EE+E+ I  T
Sbjct: 383 ADTSVELADGESFVIGGLVSRATTSNVSKVPVLGDLPILGTFFKNLNYTQEESELVIIVT 442

Query: 416 PFLVKPV 422
           P LV P+
Sbjct: 443 PRLVHPL 449


>gi|221066739|ref|ZP_03542844.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
 gi|220711762|gb|EED67130.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
          Length = 467

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 111/223 (49%), Gaps = 34/223 (15%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           FS  G+  +  F      LE     R LA+PTL A +GQSASF +GG+      S+S+  
Sbjct: 249 FSGAGISAQLGF------LEGNGLARVLAKPTLVAHTGQSASFLAGGEIPIPVPSTSSNN 302

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PVIGVNAGDMPSYRVRKAD 357
            S+   ++GV L  TPTVLS  RI L++  E S+        + GV    +P+   R+AD
Sbjct: 303 ISIRYKEFGVKLQLTPTVLSNERIALKVAPEASDLDYTSGVTIAGV---AVPAIATRRAD 359

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T VEL  G + V+ GL+          +PLL  +PILG  F+N  ++++E E+ I  TP 
Sbjct: 360 TMVELADGESFVIGGLVSRSTSSSVNKVPLLGDLPILGPFFKNLNYSQDEKELVIIVTPR 419

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFN------RVNKIYGP 454
           LV+P+             V+ D +A            N+++GP
Sbjct: 420 LVQPLP------------VQTDLEALLPGGRSEQRNANQVWGP 450


>gi|330959995|gb|EGH60255.1| type II and III secretion system protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 416

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L+A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                   +  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A
Sbjct: 329 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 377


>gi|83747917|ref|ZP_00944949.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551]
 gi|207739458|ref|YP_002257851.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           IPO1609]
 gi|83725450|gb|EAP72596.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551]
 gi|206592834|emb|CAQ59740.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           IPO1609]
          Length = 462

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 5/168 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L  +E     R LAEP+L A+SGQSA+F +GG+ +   V  + G T++    +G+ L  +
Sbjct: 252 LSLIESNGLARVLAEPSLVALSGQSANFLAGGE-IPIPVPQALGTTTIEYKPFGIGLTVS 310

Query: 320 PTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PT+LS  RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ GL+ 
Sbjct: 311 PTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFVIGGLVS 370

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                  + +P L  +PI+G+ F+   +N+EE E+ I  TP LV+P+A
Sbjct: 371 RTTLSNVDKLPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMA 418


>gi|207724789|ref|YP_002255186.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           MolK2]
 gi|206590014|emb|CAQ36975.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           MolK2]
          Length = 447

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 5/168 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L  +E     R LAEP+L A+SGQSA+F +GG+ +   V  + G T++    +G+ L  +
Sbjct: 237 LSLIESNGLARVLAEPSLVALSGQSANFLAGGE-IPIPVPQALGTTTIEYKPFGIGLTVS 295

Query: 320 PTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PT+LS  RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ GL+ 
Sbjct: 296 PTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFVIGGLVS 355

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                  + +P L  +PI+G+ F+   +N+EE E+ I  TP LV+P+A
Sbjct: 356 RTTLSNVDKLPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMA 403


>gi|33152386|ref|NP_873739.1| rough colony protein A [Haemophilus ducreyi 35000HP]
 gi|21326707|gb|AAL92467.1| RcpA [Haemophilus ducreyi]
 gi|33148609|gb|AAP96128.1| rough colony protein A [Haemophilus ducreyi 35000HP]
          Length = 456

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 194/398 (48%), Gaps = 32/398 (8%)

Query: 53  GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM--- 109
           G  K+I  +  +D   + VS P  AD  +    +  L+ K  G+  +++   +G  +   
Sbjct: 34  GQTKLIKTKTKIDT--IFVSSPEVADYQILDDNSFMLYAKGEGKTEIVVFDFEGNALTED 91

Query: 110 -LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
            ++++ +I  +I+     ++    +SN+ V+ +    V+ G  +   +++  + +    L
Sbjct: 92  VVSVNNMI-NNISETNQQIQTRFPNSNLTVKKIGKAYVVEGKAKNEAETEDVIRVVGEAL 150

Query: 169 SQSGRNQYA------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
             +G+N  +            N   + ++N    +   Q+ +K+T+AEV +    +IG  
Sbjct: 151 G-AGKNVTSKNLAGEQVPFLNNYQYEGIINNTTASDATQINVKLTVAEVNKKFSDEIGIH 209

Query: 217 HS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
            S ++G+      + A    G F  EGG  ++   +++ + + ++ AL+  +  + LAEP
Sbjct: 210 WSNLSGNFFKNLTNLAIQ--GGFGPEGGKLAL---VNQDNLQMLVTALDNQSNGKILAEP 264

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ++ +SG++A    GG+     +    G+ +V   ++G+ L     +    RI L +  E
Sbjct: 265 NISMLSGETADILVGGE--VPIIERKDGSPTVKYKEFGIKLAVGAKLQKNDRIRLALSQE 322

Query: 336 VSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEGIPLLSKIP 392
           VS       ++   +P +  R++ +T E+ +G + +++GLL K+DI+ + + +P L  IP
Sbjct: 323 VSTIAGSFKLDQDSLPIFNTRRSKSTFEVGNGESFIVSGLLNKEDIESITK-VPGLGDIP 381

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           ILGA FR++  +R   E+ + AT  LVKPV   ++  P
Sbjct: 382 ILGAFFRSANTSRGSKELVVIATVNLVKPVDGSEILYP 419


>gi|17549308|ref|NP_522648.1| outer membrane channel signal peptide protein [Ralstonia
           solanacearum GMI1000]
 gi|17431560|emb|CAD18238.1| probable pilus assembly, secretin cpac signal peptide protein
           [Ralstonia solanacearum GMI1000]
          Length = 454

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 5/168 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L  +E     R LAEP+L A+SGQSA+F +GG+ +   V  + G T++    +G+ L  +
Sbjct: 244 LSLIESNGLARVLAEPSLVALSGQSANFLAGGE-IPIPVPQALGTTTIEYKPFGIGLTVS 302

Query: 320 PTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PT+LS  RI L++  E S+      + +N   +P+   R+ADTTVEL  G + V+ GL+ 
Sbjct: 303 PTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADTTVELGDGESFVIGGLVS 362

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                  + +P L  +PI+G  F+   +N+EE E+ I  TP LV+P+A
Sbjct: 363 RTTLSNVDKVPFLGDVPIIGTFFKRLNYNQEERELVIIVTPRLVRPMA 410


>gi|115379230|ref|ZP_01466346.1| type II and III secretion system protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822227|ref|YP_003954585.1| type II and III secretion system [Stigmatella aurantiaca DW4/3-1]
 gi|115363762|gb|EAU62881.1| type II and III secretion system protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395299|gb|ADO72758.1| Type II and III secretion system [Stigmatella aurantiaca DW4/3-1]
          Length = 485

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 185/434 (42%), Gaps = 67/434 (15%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  I++G+    ++ VP  +  + + DP  A+V       + + G+  G+  +I+    G
Sbjct: 31  GSTIALGVGTQKVITVP-GIARIALGDPNVAEVKNIGNNQVLIIGQTEGKTTLIIWKSSG 89

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQR------ 159
           +++  L  +  +D   +   +++ + +   + V MV D + L G   T QD+ R      
Sbjct: 90  QRVTFLIAVRRQDPNEIISEIKKLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVS 149

Query: 160 -------------------AVELSETFLSQSGRNQYAN---------------------- 178
                              A  L+  +     RN  AN                      
Sbjct: 150 LYPNVKSFVKIAPNAKKLVAQNLNAAYQKAGLRNVQANVVGSTIFLEGSVESQQDLQKAE 209

Query: 179 ----SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAA 232
               +  +KV NLL +  +  +  +V   E+RR+   + G ++   I+GS++  +     
Sbjct: 210 LITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYPTDISGSATASALISKE 269

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            F G F S  G  S++  L    F     A +     R LA+P L   SG+ A F +GGQ
Sbjct: 270 LFPGTFSS--GVSSLQ-FLASADFAVGFQANDGYG--RLLAQPKLVCASGEKAEFLAGGQ 324

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGD--- 347
                ++++    +V    YGV+L+  PT    G I   I+ E SE    + V+ G    
Sbjct: 325 VPIPLITNNQ--FTVEYKPYGVILNLRPTADRSGNIQTEIEAEASEIDTSVAVSIGGSAA 382

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P +R RK  T V +  G TIVL+G+   D Q+    +P L  IPI+G LF+N  F+  +
Sbjct: 383 VPGFRTRKVKTNVTVRHGETIVLSGVFSHDEQKAVSKLPGLGHIPIIGELFKNRAFDSTK 442

Query: 408 TEIFIAATPFLVKP 421
            E+ I  TP +V P
Sbjct: 443 RELVIFVTPRIVNP 456


>gi|330969406|gb|EGH69472.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 325

 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +++A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 118 MINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 177

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+
Sbjct: 178 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVISGLI 237

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                   +  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A
Sbjct: 238 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 286


>gi|330938340|gb|EGH41971.1| type II and III secretion system protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 247

 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +++A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 40  MINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 99

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+
Sbjct: 100 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 159

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                   +  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A
Sbjct: 160 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 208


>gi|171921001|gb|ACB59184.1| RcpA [Actinobacillus suis ATCC 33415]
          Length = 460

 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 182/390 (46%), Gaps = 39/390 (10%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDI 114
           +++    +  V VS P  AD  +    T  L+ K  G+A ++    DG    +  +N++ 
Sbjct: 39  LIKTDAKIDTVFVSSPDIADYEILDDNTFMLYAKAEGRAEIVAFDVDGTPLTEDFINVNN 98

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR--------------- 159
            I    A  E    RF  +SN+ V+ +    V+ G  +   +S+                
Sbjct: 99  AINNIAATNEQIQTRF-PNSNLSVKKIGKAYVIEGKAKNAAESEEINRIVGESLGAGKKV 157

Query: 160 ---AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
               VE SE  +    + QY     + ++N  N     Q+ +K+T+AEV +    +IG  
Sbjct: 158 VEAKVEGSEDAIPFLDKYQY-----EGIINNANEEDATQINVKLTVAEVNKTFSDEIGIN 212

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
            +    +   +   AA  GG F   GG  ++   ++  +   +L AL+     + LAEP 
Sbjct: 213 WNNLSGNFFRNLGSAAINGG-FGKSGGQLAL---VNSNNLNVLLSALDNQNNGKILAEPN 268

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ++ +SG++A    GG+  +    +  G  +V   ++G+ L     V    RI L +   V
Sbjct: 269 ISMLSGETADILVGGEVPF-VQRNRDGELNVLYKEFGIKLAVGAKVQKSDRIRLLLSQSV 327

Query: 337 SEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEGIPLLSKIP 392
           S  + G   ++   +P +  R++ +T E+ +G + +++GLL K DI+ +K+ +P L  +P
Sbjct: 328 S-TIAGNYEIDDNHIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK-VPFLGDVP 385

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPV 422
           ILGA FR++  +RE  E+ + AT  LVKPV
Sbjct: 386 ILGAFFRSANSSRESKELVVVATVNLVKPV 415


>gi|213968016|ref|ZP_03396162.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato T1]
 gi|301383668|ref|ZP_07232086.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059963|ref|ZP_07251504.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302131629|ref|ZP_07257619.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213927359|gb|EEB60908.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato T1]
          Length = 419

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 97/170 (57%), Gaps = 4/170 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L+A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 212 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 271

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPT++   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+
Sbjct: 272 TPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 331

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
                   +  P L  IPILGA FR+S+  R E E+ +  TP LV+P+A+
Sbjct: 332 SSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAV 381


>gi|28871966|ref|NP_794585.1| type II/III secretion system protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28855219|gb|AAO58280.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331014708|gb|EGH94764.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 419

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 97/170 (57%), Gaps = 4/170 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L+A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 212 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 271

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPT++   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+
Sbjct: 272 TPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 331

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
                   +  P L  IPILGA FR+S+  R E E+ +  TP LV+P+A+
Sbjct: 332 SSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAV 381


>gi|257483347|ref|ZP_05637388.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331012566|gb|EGH92622.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 416

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 96/169 (56%), Gaps = 4/169 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L+A+E +     LA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MLNAMENSGYAYILARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                      P L  IPILGA FRNS+  R+E E+ +  TP LV+P+A
Sbjct: 329 SSSNVGSVGKFPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLA 377


>gi|330953053|gb|EGH53313.1| type II and III secretion system protein [Pseudomonas syringae Cit
           7]
          Length = 416

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +++A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                   +  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A
Sbjct: 329 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 377


>gi|302185189|ref|ZP_07261862.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae 642]
          Length = 416

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +++A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                   +  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A
Sbjct: 329 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 377


>gi|330976799|gb|EGH76834.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 416

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +++A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                   +  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A
Sbjct: 329 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 377


>gi|215433395|gb|ACJ66663.1| outer bacterial membrane secretin family protein [Myxococcus fulvus
           HW-1]
          Length = 482

 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 186/435 (42%), Gaps = 69/435 (15%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +S+G+    ++ +P  +  V + DP+ ADV       + + G+  G+  +++    G
Sbjct: 28  GTNVSLGVGSQKVITIP-GLSRVALGDPSIADVKTLGSGQLLITGQAEGKTTLLVWKSSG 86

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQR------ 159
           +++  L  + ++D   +   ++R + +   + V MV D + L G   T QD+ R      
Sbjct: 87  QRVSYLVAVRKQDPNEVITEIKRLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVG 146

Query: 160 -------------------AVELSETFLSQSGRNQYAN---------------------- 178
                              A  L+  F     +N  AN                      
Sbjct: 147 LYPNVKSFVKIAPNAKKLVAQNLNAAFQKAGLKNVQANVVGATIFLEGSVESQQDLQKAE 206

Query: 179 ----SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAA 232
               +  +KV NLL +  +  +  +V   E+RR+   + G ++   ITG++S  +     
Sbjct: 207 LITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYPTDITGTASAIANISQE 266

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPTLTAISGQSASFTSGG 291
            F G F S     ++    D FSF       +      R LA+P L   SG+ A F +GG
Sbjct: 267 LFPGTFGSGVSTLALNANSD-FSF-----GFQGNDGYGRLLAQPKLVCASGEKAEFLAGG 320

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAG--- 346
           +     ++++    +V    YGV+L+  PT    G I   I+ E SE    + V+ G   
Sbjct: 321 EVPIPLITNNQ--FTVEFKKYGVILNLRPTADRNGNIQTEIEAEASEIDTSVAVSFGGSS 378

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P +R R+  T V +  G TIVL+G+   D Q+    +P L  IPI+G LF++  F+  
Sbjct: 379 SIPGFRTRRVKTNVTVRHGETIVLSGVFSHDEQKSVSKLPGLGHIPIVGELFKSRGFDST 438

Query: 407 ETEIFIAATPFLVKP 421
           + E+ I  TP +V P
Sbjct: 439 KRELVIFVTPRIVNP 453


>gi|330963438|gb|EGH63698.1| type II/III secretion system protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 416

 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 97/170 (57%), Gaps = 4/170 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L+A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPT++   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
                   +  P L  IPILGA FR+S+  R E E+ +  TP LV+P+A+
Sbjct: 329 SSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAV 378


>gi|330873641|gb|EGH07790.1| type II/III secretion system protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 416

 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 97/170 (57%), Gaps = 4/170 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L+A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPT++   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
                   +  P L  IPILGA FR+S+  R E E+ +  TP LV+P+A+
Sbjct: 329 SSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAV 378


>gi|330895618|gb|EGH27925.1| type II and III secretion system protein [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 416

 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +++A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                   +  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A
Sbjct: 329 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 377


>gi|66047618|ref|YP_237459.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258325|gb|AAY39421.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae B728a]
          Length = 416

 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +++A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                   +  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A
Sbjct: 329 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 377


>gi|261856884|ref|YP_003264167.1| type II and III secretion system protein [Halothiobacillus
           neapolitanus c2]
 gi|261837353|gb|ACX97120.1| type II and III secretion system protein [Halothiobacillus
           neapolitanus c2]
          Length = 443

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 168/390 (43%), Gaps = 38/390 (9%)

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDI 114
           + ++   P  +  V V +    +V V   R M +     G  ++ L   DG ++ ++L I
Sbjct: 43  QALVRSAPGSLLRVAVGNGKLVEVRVLGRRQMVIIANQAGDTSLQLWMRDGSRRSIDLHI 102

Query: 115 LIER--DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
           +      +A L  TL +  A   + V  V   VVL G+  T +D  +   + + +     
Sbjct: 103 VSGNTDQVAELVRTLLK--ASKAVSVNTVGGNVVLSGVNLTQEDVAQIAAIKKVYPQVLD 160

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
             Q AN+   K M          V +KV I E  +  L QIG +        GP  + A 
Sbjct: 161 FTQ-ANAVQMKPM----------VMMKVRIMEFDKSALHQIGIKWD--SVIDGPGGALAH 207

Query: 233 DFGGKFV------SEGG---------DFSVKGVLDRF----SFETVLHALERATAIRTLA 273
           DF    +      S GG           S+ G    F    S  + ++ + +      LA
Sbjct: 208 DFASNSLYRMTPSSFGGIGANGAVNLPLSLSGTPAFFGLVTSITSKINLMMQTGNAWELA 267

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            P L A SG +A F  GG+ +   ++   G TSV    YG+ LH  P V S G I   I+
Sbjct: 268 TPQLAARSGGTADFLVGGE-VPIPIAQGLGQTSVEYKPYGIKLHIEPVVSSTGDISTTIK 326

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            E+S     V     P +  RKA T V +  G TIV++GL+     +  + +P L +IP+
Sbjct: 327 AEISHIDPSVTVQGYPGFLTRKASTEVNVHEGQTIVISGLVDSSASKTIDKVPGLGQIPV 386

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVA 423
           LG LFR+  F  + +++ I  TP+LV P A
Sbjct: 387 LGELFRSRDFKSKRSDLVIFVTPYLVTPDA 416


>gi|218509314|ref|ZP_03507192.1| pilus assembly secretion protein [Rhizobium etli Brasil 5]
          Length = 177

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 76/117 (64%), Gaps = 3/117 (2%)

Query: 22  SVAKLPPIKEANA---AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           S   L  + EA+A    +I I+       +++ +GLNK +++ +P D  D+LVSDP+ AD
Sbjct: 29  SFGPLLAVDEAHADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAHDILVSDPSMAD 88

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
            V  + R +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE  LRRFI DSN
Sbjct: 89  AVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANLRRFIPDSN 145


>gi|127511579|ref|YP_001092776.1| type II and III secretion system protein [Shewanella loihica PV-4]
 gi|126636874|gb|ABO22517.1| type II and III secretion system protein [Shewanella loihica PV-4]
          Length = 436

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 174/384 (45%), Gaps = 45/384 (11%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHL 123
           +V+ ++V +       V   + + L G+  G  ++ L   DGK + L+L +  +  +   
Sbjct: 42  NVERIVVGNGKVLSAKVVDNKGVLLIGEAPGNTDLQLWQKDGKLIKLSLTVTPDNSLRTT 101

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ--RAVELSETFLSQSGRNQYANSSS 181
            M  +   A  ++ V      +++ G     Q  Q  + +E     +S     ++A + S
Sbjct: 102 TMVKKMLAAFPSLTVSESDGLIIVQGEADLAQKEQLEKILEGDPNVVSLVKYLKFAKTMS 161

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAAD--FGGK 237
                         V ++V I E  +  L  +G  ++ S+ G + G +K F A+  F   
Sbjct: 162 P------------MVKMQVKIVEFNKSTLNNVGIKWETSMAGPAYGVAKGFTANPIFN-- 207

Query: 238 FVSEGGDFSVK---------GVLDRFSFETV---------LHALERATAIRTLAEPTLTA 279
            V+  G ++           GVLD   + ++         +  L      R LA+P LT 
Sbjct: 208 -VASPGQYTEAITKSITENIGVLDTRGWSSLGIVSGIGSQIQLLSEKGDARLLAQPNLTT 266

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-- 337
            SG+SASF +GG+   ++VS   GA  V   +YG+ L   P V     I  R+  EVS  
Sbjct: 267 RSGESASFLAGGEFPIRSVSG-LGAVDVEYKEYGIKLDIEPVVDEQQNIVSRVMAEVSSI 325

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           +P + V+   +P    R+ ++ + + +  TIV++GL+  ++ ++    PLL  IPILG L
Sbjct: 326 DPSVAVDG--VPGMLTRRTESVINVKNNETIVISGLVNSEMSKIVNKFPLLGDIPILGEL 383

Query: 398 FRNSRFNREETEIFIAATPFLVKP 421
           F++  F  ++TE+ I  TP +V P
Sbjct: 384 FKSRDFKDDKTELVIFVTPVVVYP 407


>gi|168703130|ref|ZP_02735407.1| putative outer membrane channel for pilus assembly CpaC [Gemmata
           obscuriglobus UQM 2246]
          Length = 577

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 171/405 (42%), Gaps = 39/405 (9%)

Query: 63  PVDV----QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           P D+    +DVL + P   D     P  + L GK  G + + ++  D    L  D++++ 
Sbjct: 68  PTDILNSREDVLGARPDPND-----PTKLLLTGKTAGLSQLTIVQKDAPP-LKFDVVVKP 121

Query: 119 DIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
           D+A L   +R  +  +++ VE  + + +VL G V +  D+     L+         N   
Sbjct: 122 DLAQLRKLIRDTVPTASVTVEPGLGNVIVLSGYVTSPSDADIVQRLA---------NSAV 172

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
             ++  V+N + I G  QV + V +A V R+ L+  GF  ++ G  S    S  +   G 
Sbjct: 173 GGANANVINAVQIGGVQQVQIDVVVASVDRNQLRSRGFDFALPGRGSFSFSSLVSGLLG- 231

Query: 238 FVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
             S GG          +F    V +RF     L AL      + LAEP +   +G+ A F
Sbjct: 232 VQSAGGVTTATFSPDSNFQFAVVPNRFF--GALRALRTEGVAKFLAEPRVVTQTGRPAFF 289

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPV-IGV 343
            +GGQ    + SS      VT   +G  L   P V   G I L I    T VS+ + I V
Sbjct: 290 RAGGQQAIISGSSGITGPGVTLQPFGTELTVVPIVYGNGMIWLDINPRITAVSQGLGITV 349

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P +  +   +TV L SG T  + GL+++ +      +P+L  +P  G  F     
Sbjct: 350 GGSSSPGFTEQSVQSTVLLESGQTFAIGGLIQNSVNASASKVPVLGDLPFAGTYFSRVEH 409

Query: 404 NREETEIFIAATPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFN 446
              E+E+ I  TP LV P+      +  P       DD + F  N
Sbjct: 410 TVRESELVILVTPRLVHPMDQCQGPKRLPGQETRSPDDYELFLEN 454


>gi|170725113|ref|YP_001759139.1| type II and III secretion system protein [Shewanella woodyi ATCC
           51908]
 gi|169810460|gb|ACA85044.1| type II and III secretion system protein [Shewanella woodyi ATCC
           51908]
          Length = 436

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 30/250 (12%)

Query: 196 VTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVK--- 248
           + ++V I E  +  L  IG  ++ S+ G + G +K+F+A+  F    VS  G +S     
Sbjct: 164 IKMQVKIVEFNKSTLNNIGIKWESSMAGPAYGAAKAFSANPIFS---VSSPGQYSETITS 220

Query: 249 ------GVLDRFSFE---------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                 GVLD   +          + +  L      R LAEP LT  SG+SA+F +GG+ 
Sbjct: 221 AITDSIGVLDTRGWNYFGIVTGIGSQIQLLSEKGDARMLAEPNLTTRSGESANFLAGGEF 280

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSY 351
             ++VS   GA  V   +YG+ L   P V     I  R+  EVS  +P + V+   +P  
Sbjct: 281 PIRSVSG-LGAVDVEYKEYGIKLDIEPVVDDDLNIVSRVMAEVSSIDPSVAVDG--IPGM 337

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+ ++ + + +  TIV++GL+  ++ ++    PLL  IPILG LF++  F   ++E+ 
Sbjct: 338 LTRRTESVINVKNNETIVISGLVNSEMSKIVNKFPLLGDIPILGELFKSRDFKDNKSELV 397

Query: 412 IAATPFLVKP 421
           I  TP +V P
Sbjct: 398 IFVTPTVVYP 407


>gi|296124072|ref|YP_003631850.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
 gi|296016412|gb|ADG69651.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
          Length = 772

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 178/431 (41%), Gaps = 66/431 (15%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML----------NLDILIERDI 120
           ++DP   DVV + PR + + G + G   + L      + L           LD     D 
Sbjct: 196 IADPNVIDVVQYGPREISIIGVSRGTTTLTLWFEGAAEPLIYLVKVIRDPALDFQRRLDY 255

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE-TFLSQSGR------ 173
             LE  L+    +S + +  +S  +V+ G  R  +++   + +     ++Q G       
Sbjct: 256 GKLEKKLQTLFPNSKVYLIPMSYKIVVRGQARDAEEAAHILSIVRGEVINQEGSLGGPQP 315

Query: 174 -------------------------NQYANSS---SKKVMNLLNIAGEDQVTLKVTIAEV 205
                                    N +  +S   +  ++N L + GE QV+L V IAE+
Sbjct: 316 FLGGLGGDLGGGSSTIDNGAIGGIGNSFGGASDLAAGFIINELRVPGEFQVSLTVRIAEL 375

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----GGDFSVKGVLDRFSFETVLH 261
            R  + + G   S+              F G  + E    GG  ++ G+ D      +L 
Sbjct: 376 NRSEMFKAGADISVL-------------FNGSQLIESSLTGGAATLGGIFDNGDVSILLD 422

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFT 319
            L+     + L EP LT +SG+ A F +GG+    T+    GA   S T   +G  +  T
Sbjct: 423 WLKTNGIGKILVEPRLTVLSGRQARFLAGGEFAVPTIIGIAGAQGQSTTFRGFGTSVLVT 482

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           PTVL    I L    E S+     +   +P    R+ DTTVE+  G T+ LAGL    ++
Sbjct: 483 PTVLDRDLIRLSTIAEYSDLNQANSVQGIPGTNARRIDTTVEMREGQTLALAGLYSHLMK 542

Query: 380 QLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR-PDDHYSVE 437
                IP L  IP +G ALF      ++E E+ I  TP +V+P+   ++   P    +  
Sbjct: 543 TNISKIPFLGDIPKIGPALFSRKEKTQDENELLILITPDIVRPMDPEEVPPVPGFEVTYP 602

Query: 438 DDAKAFFFNRV 448
            D + F++NR+
Sbjct: 603 GDHEFFWYNRI 613


>gi|108762925|ref|YP_631309.1| outer membrane secretin family protein [Myxococcus xanthus DK 1622]
 gi|108466805|gb|ABF91990.1| protein transporter, outer bacterial membrane secretin (secretin)
           family [Myxococcus xanthus DK 1622]
          Length = 482

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 184/435 (42%), Gaps = 69/435 (15%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +S+G+    ++ +P  +  V + DP+ A+V       + + G+  G+  +++    G
Sbjct: 28  GTTVSLGVGSQKVITIP-GLSRVALGDPSVAEVKTLGSGQLLITGQAEGKTTLLVWKSSG 86

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQR------ 159
           +++  L  + ++D   +   ++R + +   + V MV D + L G   T QD+ R      
Sbjct: 87  QRVSYLVAVRKQDPNEVISEIKRLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVG 146

Query: 160 -------------------AVELSETFLSQSGRNQYAN---------------------- 178
                              A  L+  F     +N  AN                      
Sbjct: 147 LYPNVKSFVKIAPNAKKLVAQNLNAAFQKAGLKNVQANVVGATIFLEGSVESQQDLQKAE 206

Query: 179 ----SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAA 232
               +  +KV NLL +  +  +  +V   E+RR+   + G ++   ITG+++  +     
Sbjct: 207 LITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYPTDITGTATAIASISQE 266

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPTLTAISGQSASFTSGG 291
            F G F S     ++    D FSF       +      R LA+P L   SG+ A F +GG
Sbjct: 267 LFPGTFGSGVSTLTLNANAD-FSF-----GFQGNDGYGRLLAQPKLVCASGEKAEFLAGG 320

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAG 346
           +     ++++    +V    YGV+L+  PT    G I   I+ E SE    V      + 
Sbjct: 321 EVPIPLITNN--QFTVEFKKYGVILNLRPTADRNGNIQTEIEAEASEIDTSVAVSFGGSA 378

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P +R RK  T V +  G TIVL+G+   D Q+    +P L  IPI+G LF++  F+  
Sbjct: 379 SIPGFRTRKVKTNVTVRHGETIVLSGVFSHDEQKSVSKLPGLGHIPIIGELFKSRGFDST 438

Query: 407 ETEIFIAATPFLVKP 421
           + E+ I  TP +V P
Sbjct: 439 KRELVIFVTPRIVNP 453


>gi|32477871|ref|NP_870865.1| type II secretion system protein [Rhodopirellula baltica SH 1]
 gi|32448428|emb|CAD77943.1| probable type II secretion system protein [Rhodopirellula baltica
           SH 1]
          Length = 704

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 137/306 (44%), Gaps = 28/306 (9%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           ++R   L    LSQ+G           ++N + I GE QV LKVT+AEV R   + IG  
Sbjct: 309 AERRRNLDPIALSQAG-----------IINQMKIVGEQQVMLKVTVAEVNRSAARSIGLN 357

Query: 217 HSITGSSSGPS--KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
             +  + +G +  +S   +        G +  +   LD       + AL R    RTLAE
Sbjct: 358 FGVD-NDNGLTVFQSLTGNLASTQSQSGAN--ILASLDMGQVRLAIEALRRLNLSRTLAE 414

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           P L A++GQ A F +GGQ     +SS         V+   +GV L FTP +     I L+
Sbjct: 415 PNLVAMNGQPADFQAGGQFPIPIISSGGVGNNLQGVSFVPFGVQLQFTPFIQDRDVIRLQ 474

Query: 332 IQTEVS--EPVIGVN------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           +  EVS  +  +G +         +     R   TTV+L SG TI +AGLL+ +     +
Sbjct: 475 MNAEVSTRDESLGTSIGGGGGGTQVSGLNSRNFSTTVQLRSGQTIAVAGLLQTNYGASSD 534

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKA 442
             P    +PI+GA    +R +  E E+ I  TP LV PV A    + P        D + 
Sbjct: 535 RTPFWGDLPIIGATGGVNRSSSGEQELVILVTPHLVAPVDACETPALPGSDVYEPSDIEF 594

Query: 443 FFFNRV 448
           F  NR+
Sbjct: 595 FIANRL 600


>gi|307295325|ref|ZP_07575164.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
 gi|306878828|gb|EFN10047.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
          Length = 412

 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 117/249 (46%), Gaps = 17/249 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSEGGDF 245
           AGE  V + V  A V    LK +GF  S     I G+   PS   +A F    +S     
Sbjct: 125 AGEQVVAVDVQFAAVSATTLKALGFNFSKLSGDIQGAIVSPSSLGSASFDPGGLSLEASA 184

Query: 246 SVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-- 297
            ++   + F          VL AL      + LA+PTL   SG+ ASF +GG+       
Sbjct: 185 PIQNAFNLFLSAPNRGIGAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEFPVPVPQ 244

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRV 353
            S S    S+   ++GV L  TP VLS   I L+I  EVSE      + +    +P  R 
Sbjct: 245 ASGSGNMLSIQYKEFGVRLSVTPFVLSKDHIVLKIAPEVSELDYANGVQLQGYVVPGLRR 304

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R A+TTVEL SG + V+AGL        KE  P L  +P+LGA F+  +  +E+ E+ I 
Sbjct: 305 RSAETTVELGSGQSFVIAGLSYSSQTVTKEKTPFLGDLPVLGAFFKRQQNQKEKQELIIV 364

Query: 414 ATPFLVKPV 422
           ATP LV  V
Sbjct: 365 ATPRLVTAV 373


>gi|327538064|gb|EGF24754.1| bacterial type II/III secretion system protein [Rhodopirellula
           baltica WH47]
          Length = 758

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 137/306 (44%), Gaps = 28/306 (9%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           ++R   L    LSQ+G           ++N + I GE QV LKVT+AEV R   + IG  
Sbjct: 363 AERRRNLDPIALSQAG-----------IINQMKIVGEQQVMLKVTVAEVNRSAARSIGLN 411

Query: 217 HSITGSSSGPS--KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
             +  + +G +  +S   +        G +  +   LD       + AL R    RTLAE
Sbjct: 412 FGVD-NDNGLTVFQSLTGNLANTQNQSGAN--ILASLDMGQVRLAIEALRRLNLSRTLAE 468

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           P L A++GQ A F +GGQ     +SS         V+   +GV L FTP +     I L+
Sbjct: 469 PNLVAMNGQPADFQAGGQFPIPIISSGGVGNNLQGVSFVPFGVQLQFTPFIQDRDVIRLQ 528

Query: 332 IQTEVS--EPVIGVN------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           +  EVS  +  +G +         +     R   TTV+L SG TI +AGLL+ +     +
Sbjct: 529 MNAEVSTRDESLGTSIGGGGGGTQVSGLNSRNFSTTVQLRSGQTIAVAGLLQTNYGASSD 588

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKA 442
             P    +PI+GA    +R +  E E+ I  TP LV PV A    + P        D + 
Sbjct: 589 RTPFWGDLPIIGATGGVNRSSSGEQELVILVTPHLVAPVDACETPALPGSDVYEPSDIEF 648

Query: 443 FFFNRV 448
           F  NR+
Sbjct: 649 FIANRL 654


>gi|118581113|ref|YP_902363.1| type II and III secretion system protein [Pelobacter propionicus
           DSM 2379]
 gi|118503823|gb|ABL00306.1| type II and III secretion system protein [Pelobacter propionicus
           DSM 2379]
          Length = 386

 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 123/277 (44%), Gaps = 22/277 (7%)

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV- 247
           NI    QV L+V +A++ +  LK +G    +   ++    +          S  GD ++ 
Sbjct: 103 NIDDSQQVLLQVKVAQIDKTALKNLGVSFLVKNQNANGFSNMIGAPSTSSTSASGDGTIS 162

Query: 248 --KGVLDRFS---------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
              G++D FS                  V+ AL      + LAEP L   SGQ   F +G
Sbjct: 163 TANGIIDGFSSLNPYTMGITHFPSGVSAVIKALATKGMAKILAEPNLVVKSGQKGEFFAG 222

Query: 291 GQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ-TEVSEPVIGVNAGD 347
            +  +  +  + ST   S+   + GV L+F P V+  G I L +   EVS     +    
Sbjct: 223 SRIPFSVLENTGSTSTPSIRWEEVGVKLNFKPFVMESGTIALELDPVEVSNIQGTLETNG 282

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P    R   T+ EL  G ++VLAGLL+D+  +    +PLL  IPILGALFR +   ++E
Sbjct: 283 YPVIDTRTIKTSAELRDGESLVLAGLLRDETYKSISKVPLLGDIPILGALFRTTENEQKE 342

Query: 408 TEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAF 443
           TE+    TP LV P V    +  P D     +  K F
Sbjct: 343 TELVFFITPKLVMPEVPGVKVELPTDKQLTPEQEKEF 379


>gi|311697132|gb|ADQ00004.1| type II and III secretion system protein [marine bacterium HP15]
          Length = 373

 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 124/252 (49%), Gaps = 15/252 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR- 253
           QV   + I EV R  L  +G  +S   +    + + +    G F   G      G+    
Sbjct: 94  QVQTDIRIVEVNRSELNTLGVYYSKLFNGGSQTIALSPPGAGGFRGFGPSAGATGITTEG 153

Query: 254 -------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                   S  ++++ALE      TLAEP+L ++SGQ+A+F SGG+     VSS  G   
Sbjct: 154 FNLFSFGSSSLSIINALESGGFAYTLAEPSLVSLSGQTATFLSGGEFPIP-VSSDNGEVE 212

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDM--PSYRVRKADTTVEL 362
           +   ++GV L  TPTV+S   I L++  EVSE     GV+ G +  P  R+R+  TTV +
Sbjct: 213 IEFKEFGVSLALTPTVVSDDEIILKVAPEVSELDFTSGVSTGGVAVPGLRIRRTQTTVTM 272

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
             G + +++GL+        + IP L  +P++GA FR+ R   E+ E+ +  TP  V   
Sbjct: 273 APGESFIISGLVSRATTNRSDRIPGLGNLPVIGAFFRSDRVASEDKELIMVVTPKFVS-- 330

Query: 423 AMRDLSRPDDHY 434
           A + LSR   ++
Sbjct: 331 AQKQLSREARNF 342


>gi|33593509|ref|NP_881153.1| putative secretory apparatus [Bordetella pertussis Tohama I]
 gi|33572865|emb|CAE42800.1| putative secretory apparatus [Bordetella pertussis Tohama I]
 gi|332382917|gb|AEE67764.1| putative secretory apparatus [Bordetella pertussis CS]
          Length = 470

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 160/356 (44%), Gaps = 51/356 (14%)

Query: 89  LFGKNVGQANV-ILIGHDGKQMLNLDIL------IERDIAHLEMTLRRFIADSNIRVEMV 141
           LF +  G ++V I  G   +Q   +++L      +  ++A L   + R       R   V
Sbjct: 82  LFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLREEVAALLARIPR------ARSSAV 135

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKV 200
              +V+ G   +  D  R   L++ +               +V++     G D+ V L V
Sbjct: 136 GAHIVIEGSQLSEDDHARIAALAQRY--------------PEVLDFTGRVGWDRMVLLDV 181

Query: 201 TIAEVRRDILKQIGFQ---------HS---ITGSSSGPSKSFAADFGGKFVSE-GGDFSV 247
            + E+ R  L+++G +         H+     GSS+  +       G   V   GG   V
Sbjct: 182 QVVELPRQSLRELGLRWDEPAVGGVHAGAVWNGSSAALAPPPGPLAGAAAVRHAGGLLGV 241

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
             +L        L AL +      LA+P L A SG +ASF +GG+  Y+T       T++
Sbjct: 242 NALLS-----ARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYRTTDKEGNGTTL 296

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSG 365
               YGV L  TP + + G +  RI+ E S  +P + + AG  P+ R R+A T   + SG
Sbjct: 297 F-KPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAG--PALRKRRAVTEFNVHSG 353

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            T+VL G L  +    ++G+P LS++P++GALF   R    ETE+ I  TP +V P
Sbjct: 354 QTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTPTIVSP 409


>gi|307726635|ref|YP_003909848.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
 gi|307587160|gb|ADN60557.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
          Length = 642

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 189/428 (44%), Gaps = 77/428 (17%)

Query: 80  VVHSPRTMY--------LFGKNVGQANVILIG-HDGKQMLNLDILIERDIAHLEMTLRRF 130
           ++H P T+         L   NV   N++L+G  DG  M +L +  E+ IA L+ T+R  
Sbjct: 60  ILHVPGTIKRIAIGNGKLITANVVDGNLMLLGEQDG--MTSLVVWNEKGIA-LQTTVRIA 116

Query: 131 IADSN---------------IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
            ++ N               +R++ +   +VL G++                     R+ 
Sbjct: 117 KSEVNASLQQLRAVLKSVSGLRIDAIGSNIVLSGVIH--------------------RDM 156

Query: 176 YA--NSSSKKVMNLLNIAGEDQ-------VTLKVTIAEVRRDILKQIG--FQHSITGSSS 224
            A   S+++ + N+++    D+       V  KV I EV R+  + +G  +  +  G   
Sbjct: 157 VAVVKSATQDMKNVVDTTTVDEGEALRKTVHFKVQIMEVTRNAQRNLGIAWDSAFRGPQI 216

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G + S A     K V+ G  + + G+    S + +  A+    A   LA P L   SG +
Sbjct: 217 GGAASVATG-AAKAVTAGTSYFLAGIASNISSQ-INFAVNNGDAF-ILAAPELNTRSGGT 273

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           ASF +GGQ +    S + G T+V   DYGV L   P V + G I   + TE+S+    V+
Sbjct: 274 ASFLAGGQ-VPIPQSGALGTTNVMYKDYGVKLSINPVVDANGIISAHLTTEISQIDPTVS 332

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            G +P +  R   + + + +G T+ ++GL+  D     +G+P L +IP++G LFR+  F 
Sbjct: 333 YGGLPGFLTRSTSSDISMRTGETLAISGLISADAVNDSDGMPFLGQIPVIGQLFRSDSFR 392

Query: 405 REETEIFIAATPFLVKP--VAMRDL----SRPDDHYS---------VEDDAKAFFFNRVN 449
            +++++ I  TP +  P      DL     R D  Y          V D+ KA   N V+
Sbjct: 393 AKKSDLVIFVTPLISDPELAPNTDLLARADRIDSGYVNKFGNPEPLVADEEKAAHINAVH 452

Query: 450 KIYGPKEA 457
           +   P  A
Sbjct: 453 QPIQPTPA 460


>gi|292670351|ref|ZP_06603777.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648082|gb|EFF66054.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 426

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 24/237 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSE----GGDFSVKG 249
           QV+L+  +  + ++  KQ+G   S +     P   +  D GG + V E     G  S  G
Sbjct: 185 QVSLEARVVAISKEAAKQLGVDWSWSSLPQYPRVQY--DRGGSWRVGERNAGTGGTSAPG 242

Query: 250 VLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           ++            F +   + AL      + LA P +T I G+ A    G +     V+
Sbjct: 243 IIRFGRGPEGLPYEFYYSAAIRALITEGKAKMLARPNVTTIQGREALINIGAEVPVPRVA 302

Query: 300 SSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK-- 355
           +S   T+  +   + G++L +TP V + G I  R+ TEVS PV      D+ +YR +K  
Sbjct: 303 TSNNVTTTGIEYREAGIILRYTPRVTADGNIVARVHTEVSTPVY---VEDLKAYRFQKRS 359

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           ADTTV L +G T+V+ GL+  D  +    IP L  +P+LGA FR+ R +R ETE+ I
Sbjct: 360 ADTTVRLKNGETMVIGGLIDSDESRSLSKIPFLGDLPVLGAFFRSVRTSRTETELMI 416


>gi|329912918|ref|ZP_08275837.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480]
 gi|327545493|gb|EGF30693.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480]
          Length = 608

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 165/361 (45%), Gaps = 44/361 (12%)

Query: 85  RTMYLFGKNVGQANVILIGHDGK-QMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVS 142
           + + +F   VG +++ +   DG+ Q + + I +  D   +   +  F+   S  R  ++ 
Sbjct: 151 KEVIVFANGVGTSSLFVWNADGRYQRVKVSI-VPGDTTRIARDVTAFLKSMSGTRTSIIG 209

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG-EDQVTLKVT 201
           D V++ G      D+   VEL++  + +    +Y      +++N  N  G E  V L V 
Sbjct: 210 DKVIIEG------DNLSDVELAKIDMLE---KRY-----PQIINFTNQLGWEPMVMLDVK 255

Query: 202 IAEVRRDILKQIGFQHSITGSSS-------------GP----------SKSFAADFGGKF 238
           + E   + L+ IG +    G ++             GP          +   + +  G  
Sbjct: 256 VVEFPTNELRDIGLKWGSVGGAAVGAIWSPGRRGTDGPYQVNIQSANAAPITSPEGSGSP 315

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           V   G  +V   L+       L+ L +      LA+P L+A SG  ASF +GG+  Y +V
Sbjct: 316 VRVPGGLNVLSALN-LGLNAQLNLLAQQGKASLLAQPQLSARSGTKASFLAGGEFPY-SV 373

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           ++  G T V    YG+ L   P V   G I   I  EVS+    V+    P+ + RK  T
Sbjct: 374 ATINGVT-VQFKPYGIKLDILPKVDRNGVIRATIDAEVSKIDASVSTVVGPALQTRKTKT 432

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              + +G TIVLAG+L+ D     + +PLL  +P+LGALFR+ RF  +ETE+ +  TP +
Sbjct: 433 EFNVLAGDTIVLAGMLQADNSTSIDKVPLLGDVPVLGALFRSKRFENKETELVVFVTPTI 492

Query: 419 V 419
           V
Sbjct: 493 V 493


>gi|190149865|ref|YP_001968390.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307249759|ref|ZP_07531737.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307256574|ref|ZP_07538355.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307263189|ref|ZP_07544810.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914996|gb|ACE61248.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306858174|gb|EFM90252.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306864984|gb|EFM96886.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306871551|gb|EFN03274.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 462

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 179/397 (45%), Gaps = 51/397 (12%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM---LNLDIL 115
           +++    +  + VS    AD  +    +  L+ K  G++ VI    +G  +         
Sbjct: 39  LIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDANGTPLTEDFVNVNN 98

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAVELS-------- 164
              +IA     ++    +SN+ V+ V    VL G  +   +S    R V  S        
Sbjct: 99  AINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEINRIVGESLGAGKKVI 158

Query: 165 ETFLSQSG---------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           ET L  +          + QY     + V+N  N     Q+ +K+T+AEV +    +IG 
Sbjct: 159 ETKLKHNNSEENVPFLDKYQY-----EGVINNANEENATQINVKLTVAEVNKTFSDEIGI 213

Query: 216 QHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
             S        S +F  + G     G F   GG  ++   ++  +   ++ AL+     +
Sbjct: 214 NWS------NLSGNFFRNLGNAAIQGNFNKNGGQLAL---VNSNNLNVLISALDNQNNGK 264

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V    RI L
Sbjct: 265 ILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDRIRL 323

Query: 331 RIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEGI 385
            +   VS  + G    VN+  +P +  R++ +T E+ +G + +++GLL K DI+ +K+ +
Sbjct: 324 VLSQSVS-TIAGNYEIVNS-RIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK-V 380

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV
Sbjct: 381 PVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPV 417


>gi|165975974|ref|YP_001651567.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876075|gb|ABY69123.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 462

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 179/397 (45%), Gaps = 51/397 (12%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM---LNLDIL 115
           +++    +  + VS    AD  +    +  L+ K  G++ VI    +G  +         
Sbjct: 39  LIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDANGTPLTEDFVNVNN 98

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAVELS-------- 164
              +IA     ++    +SN+ V+ V    VL G  +   +S    R V  S        
Sbjct: 99  AINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEINRIVGESLGAGKKVI 158

Query: 165 ETFLSQSG---------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           ET L  +          + QY     + V+N  N     Q+ +K+T+AEV +    +IG 
Sbjct: 159 ETKLKHNNSEENVPFLDKYQY-----EGVINNANEENATQINVKLTVAEVNKTFSDEIGI 213

Query: 216 QHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
             S        S +F  + G     G F   GG  ++   ++  +   ++ AL+     +
Sbjct: 214 NWS------NLSGNFFRNLGNAGIQGNFNKNGGQLAL---VNSNNLNVLISALDNQNNGK 264

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V    RI L
Sbjct: 265 ILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDRIRL 323

Query: 331 RIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEGI 385
            +   VS  + G    VN+  +P +  R++ +T E+ +G + +++GLL K DI+ +K+ +
Sbjct: 324 VLSQSVS-TIAGNYEIVNS-RIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK-V 380

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV
Sbjct: 381 PVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPV 417


>gi|307245412|ref|ZP_07527500.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254367|ref|ZP_07536205.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258825|ref|ZP_07540557.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261005|ref|ZP_07542687.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306853753|gb|EFM85970.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862666|gb|EFM94622.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867176|gb|EFM99032.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869307|gb|EFN01102.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 462

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 179/397 (45%), Gaps = 51/397 (12%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM---LNLDIL 115
           +++    +  + VS    AD  +    +  L+ K  G++ VI    +G  +         
Sbjct: 39  LIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDANGTPLTEDFVNVNN 98

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAVELS-------- 164
              +IA     ++    +SN+ V+ V    VL G  +   +S    R V  S        
Sbjct: 99  AINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEINRIVGESLGAGKKVI 158

Query: 165 ETFLSQSG---------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           ET L  +          + QY     + V+N  N     Q+ +K+T+AEV +    +IG 
Sbjct: 159 ETKLKHNDGEENVPFLDKYQY-----EGVINNANEENATQINVKLTVAEVNKTFSDEIGI 213

Query: 216 QHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
             S        S +F  + G     G F   GG  ++   ++  +   ++ AL+     +
Sbjct: 214 NWS------NLSGNFFRNLGNAAIQGNFNKNGGQLAL---VNSNNLNVLISALDNQNNGK 264

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V    RI L
Sbjct: 265 ILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDRIRL 323

Query: 331 RIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEGI 385
            +   VS  + G    VN+  +P +  R++ +T E+ +G + +++GLL K DI+ +K+ +
Sbjct: 324 VLSQSVS-TIAGNYEIVNS-RIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK-V 380

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV
Sbjct: 381 PVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPV 417


>gi|121607248|ref|YP_995055.1| type II and III secretion system protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121551888|gb|ABM56037.1| type II and III secretion system protein [Verminephrobacter
           eiseniae EF01-2]
          Length = 714

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 166/360 (46%), Gaps = 47/360 (13%)

Query: 85  RTMYLFGKNVGQANVILIGHDGK-QMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVS 142
           R + +F   VG +++ +   DG+ Q + +++ +  D +     +  F++  +N +  ++ 
Sbjct: 122 REVIVFANEVGTSSLFVWNEDGRYQRVKINV-VPGDTSRYAREIAAFLSTIANTKASIIG 180

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN-IAGEDQVTLKVT 201
           D V++ G      D+   ++L +    +  R  Y      +++N  N I  E  V + V 
Sbjct: 181 DKVIVEG------DNLSDIDLRKI---EDLRKHY-----PQIVNFTNQIGWEQMVLMDVK 226

Query: 202 IAEVRRDILKQIGFQHSITGSSS-----GPSKSF---------------AADFGGKFVSE 241
           + E   + L+++G + +  G +S      P +                 AAD  G  +  
Sbjct: 227 VVEFPVNELRELGLRWAAKGGASIGGIWSPIRRVHQDGLRIDVESPPITAAD--GDLIPL 284

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
               ++   L+       L  L        LA+P L+A +G  A F +GG++ Y  V+SS
Sbjct: 285 PKGLNILSALN-MGLGAKLDLLASQGKASILAQPQLSARNGAKAEFLAGGEYPY--VASS 341

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTT 359
               +V    YG+ L  TP V   G I   I +EVS  +P I   AG  P+  VR+  T 
Sbjct: 342 INGPTVMFKPYGIRLKITPRVDRNGVIRAEIDSEVSNIDPSISTAAG--PALSVRRTFTE 399

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             + +G T+VL+GL+     Q  + +P L  +P+LGALFR+ RF  +ETE+ +  TP ++
Sbjct: 400 FNVQNGETMVLSGLMSRKTSQNIDKVPFLGDLPVLGALFRSKRFQNDETELVVFVTPTVI 459


>gi|319779649|ref|YP_004130562.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella
           equigenitalis MCE9]
 gi|317109673|gb|ADU92419.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella
           equigenitalis MCE9]
          Length = 508

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 140/303 (46%), Gaps = 32/303 (10%)

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           N++  +++D V++ G   +  D ++ V+L++ +       Q  + SS+       +  ++
Sbjct: 121 NVKTSVIADKVIVEGDKLSDFDREKVVQLTKHY------PQIIDMSSQ-------VGWDE 167

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKSFAADFGGKFVSEG 242
            + + V I E+ R  ++Q+G +   T            GS++  + ++ ++     V   
Sbjct: 168 MLMIDVQIVELPRQFVQQLGLRWGTTAEGGVQIGATLEGSTAKKAFAYQSNLLANSVGNA 227

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIR----TLAEPTLTAISGQSASFTSGGQHLYKTV 298
           G  +             L+A   A A+      LA+P LTA +G +A F +GG+  Y  V
Sbjct: 228 GAIANPAFFG--GINAFLNASINAMAVEGQAVVLAQPQLTARNGTTAEFLAGGEVPYSMV 285

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
                A +V    YGV L+ TP +   G +  +I  EVS     +N    P+ + R+  T
Sbjct: 286 DDKGQAQTVF-KPYGVSLNITPRIQRDGTVRSKINVEVSTVDTSMNLNGGPALKTRRTST 344

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
                SG  IV++G +  D  Q    +P +++ PILG LF++  F   ETE+ I   P++
Sbjct: 345 EFNTKSGEPIVISGFISRDQMQSMTKVPGIAETPILGELFKSRNFQNNETELVIIVRPYV 404

Query: 419 VKP 421
           VKP
Sbjct: 405 VKP 407


>gi|46143341|ref|ZP_00204447.1| COG4964: Flp pilus assembly protein, secretin CpaC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208037|ref|YP_001053262.1| rough colony protein A [Actinobacillus pleuropneumoniae L20]
 gi|126096829|gb|ABN73657.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 462

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 179/397 (45%), Gaps = 51/397 (12%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM---LNLDIL 115
           +++    +  + VS    AD  +    +  L+ K  G++ VI    +G  +         
Sbjct: 39  LIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDANGTPLTEDFVNVNN 98

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAVELS-------- 164
              +IA     ++    +SN+ V+ V    VL G  +   +S    R V  S        
Sbjct: 99  AINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEINRIVGESLGAGKKVI 158

Query: 165 ETFLSQSG---------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           ET L  +          + QY     + V+N  N     Q+ +K+T+AEV +    +IG 
Sbjct: 159 ETKLKHNDSEENVPFLDKYQY-----EGVINNANEENATQINVKLTVAEVNKTFSDEIGI 213

Query: 216 QHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
             S        S +F  + G     G F   GG  ++   ++  +   ++ AL+     +
Sbjct: 214 NWS------NLSGNFFRNLGNAAIQGNFNKNGGQLAL---VNSNNLNVLISALDNQNNGK 264

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V    RI L
Sbjct: 265 ILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDRIRL 323

Query: 331 RIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEGI 385
            +   VS  + G    VN+  +P +  R++ +T E+ +G + +++GLL K DI+ +K+ +
Sbjct: 324 VLSQSVS-TIAGNYEIVNS-RIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK-V 380

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV
Sbjct: 381 PVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPV 417


>gi|227824391|ref|ZP_03989223.1| type II and III secretion system protein [Acidaminococcus sp. D21]
 gi|226904890|gb|EEH90808.1| type II and III secretion system protein [Acidaminococcus sp. D21]
          Length = 424

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 18/233 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QVTL+  I  ++ D  +++G Q   +G     S+           ++GG F + G   
Sbjct: 160 QKQVTLEARILSLQEDASRELGLQWKWSGLPQQNSEE----------TDGGTFHL-GHGY 208

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-- 310
             SF+ +L AL +    + LA P +  + G+      G      T   S G T+ +T   
Sbjct: 209 TGSFQGILSALCQKGKAKVLATPRIVTVPGKEGKIFIGDHIPVVTEKVSNGTTTTSTEYV 268

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTI 368
           D G+ L +TP V   G I   + TEVS P +     ++ +YR+  R ADT V L  G T+
Sbjct: 269 DAGIRLSYTPIVGPDGVITASVHTEVSTPTL---ISELHNYRITSRTADTNVRLLEGETL 325

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           V+ GL+ D+ Q+  E IPLLSK+P+LG LF      +  TE+ +  TP+L +P
Sbjct: 326 VIGGLISDEEQKRLETIPLLSKLPLLGNLFTFRSRKKTRTEVVMLLTPYLTEP 378


>gi|283778969|ref|YP_003369724.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283437422|gb|ADB15864.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 684

 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 134/294 (45%), Gaps = 34/294 (11%)

Query: 156 DSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           D QR   V+  + FL Q+  +  A  +   ++NLL I GE QV L+VT+AEV R   + I
Sbjct: 319 DQQRDPLVDQDQAFLRQTVVDS-ALLARSGIINLLQIPGEQQVMLRVTVAEVNRTAARSI 377

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHALERATAIRTL 272
           G   S+  +    +  F    G    + GG+ S V   LD       ++AL      +TL
Sbjct: 378 GLNFSVQNNQG--TTVFQNLTGQLGAAGGGNLSNVLASLDNGQVILAINALRSLRLAKTL 435

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGL 330
           AEP LT ++GQ A+F +GG      +    G     T    +GV + FTP V+   RI L
Sbjct: 436 AEPNLTTLNGQQATFRAGGSFPVPQIGGLGGTGLQGTVFVPFGVSIEFTPYVIDRDRIRL 495

Query: 331 RIQTEVS------------------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           ++   VS                    V G+N+        R  D+TVEL  G T+ +AG
Sbjct: 496 KLSAGVSVRDESLGTSIGGSAGAGGTQVAGLNS--------RTFDSTVELREGQTLAVAG 547

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L++ ++    + +P    +PI+G     SR    E E+ I  TP LV P+   D
Sbjct: 548 LIQTNMGADSDRVPFWGDLPIIGHTGGFSRTTAGEQELVILVTPELVHPLEACD 601


>gi|238750896|ref|ZP_04612393.1| Type II/III secretion system protein [Yersinia rohdei ATCC 43380]
 gi|238710810|gb|EEQ03031.1| Type II/III secretion system protein [Yersinia rohdei ATCC 43380]
          Length = 316

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 143/309 (46%), Gaps = 29/309 (9%)

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           AD  +    ++ ++ KN G A  IL   + K +    +++   I      ++     S I
Sbjct: 7   ADYELVGKNSVIVYAKNEGVAEFILFDQNHKPITKSVVMVNNIITLATKRIQAEYPGSII 66

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGR---NQYANSSS-KKVMNLLNIA 191
            +  + ++ +L G V + +     V +  E   S+  +   NQY N++    ++N + + 
Sbjct: 67  DISKIGNSYILTGTVESEEARDTIVNIVGEAIGSKKNKGSDNQYINTNDYPGIVNKIKLP 126

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
             +QV +K+TIAEV +D  + IG   S  G++ G  + F              F+ KG+ 
Sbjct: 127 QSNQVNVKLTIAEVTKDFTENIGINWSTIGNNVGAFQFF-------------QFNAKGI- 172

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                 T++HA+      R LAEP L+ +SG++ASF  GG+      S+S     +   +
Sbjct: 173 -----STLVHAINDDAIARVLAEPNLSVLSGETASFLVGGE--IPIASTSQNGVKIDYKE 225

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368
           +G+ L+    V    RI + +  EVS       V  GD  PS R RKA TT+EL  G + 
Sbjct: 226 FGIKLNIGAKVNDKKRIRIMLNEEVSSIGKSFNVTGGDSYPSLRTRKAATTLELGDGESF 285

Query: 369 VLAGLLKDD 377
           +L GL+  +
Sbjct: 286 ILGGLISSN 294


>gi|148556416|ref|YP_001263998.1| type II and III secretion system protein [Sphingomonas wittichii
           RW1]
 gi|148501606|gb|ABQ69860.1| type II and III secretion system protein [Sphingomonas wittichii
           RW1]
          Length = 431

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 124/272 (45%), Gaps = 37/272 (13%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
           +S+ +   N L++ GE  V + V  A V    L+ +GF  S            + D  G 
Sbjct: 129 SSADRGAANSLSVNGEQVVAVDVQFAAVSSSTLRALGFNFS----------KLSGDLQGA 178

Query: 238 FVSEG--GDFS-------------VKGVLDRF------SFETVLHALERATAIRTLAEPT 276
            VS    G+FS             ++   + F          VL AL      + LA+PT
Sbjct: 179 IVSPATLGNFSSTSTGLTLDTTAPLQNAFNLFLSAPNRGITAVLSALSSNGLSQLLAQPT 238

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQT 334
           L   SG+ ASF +GG+       ++     +     ++GV L  TP VLS  RI L+I  
Sbjct: 239 LLVRSGEQASFLAGGEVPIPVPQNNGNGNGIGIEYKEFGVRLKVTPFVLSKDRIVLKIAP 298

Query: 335 EVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE      + +    +P  R R  +TTV+L SG + V+AGL   +    KE  P L  
Sbjct: 299 EVSELDYTNGVRLQGYVVPGLRRRSTETTVQLGSGQSFVIAGLTYSNSVVSKEKTPFLGD 358

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           +P+LGALF+  +  RE  E+ I ATP LV P+
Sbjct: 359 LPVLGALFKRQQNQRESQELIIVATPRLVGPM 390


>gi|33601080|ref|NP_888640.1| putative secretory apparatus [Bordetella bronchiseptica RB50]
 gi|33575515|emb|CAE32593.1| putative secretory apparatus [Bordetella bronchiseptica RB50]
          Length = 470

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 160/357 (44%), Gaps = 53/357 (14%)

Query: 89  LFGKNVGQANV-ILIGHDGKQMLNLDIL------IERDIAHLEMTLRRFIADSNIRVEMV 141
           LF +  G ++V I  G   +Q   +++L      +  ++A L   + R       R   V
Sbjct: 82  LFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLREEVAALLARIPR------ARSSAV 135

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKV 200
              +V+ G   +  D  R   L++ +               +V++     G D+ V L V
Sbjct: 136 GAHIVIEGSQLSEDDHARIAALAQRY--------------PEVLDFTGRVGWDRMVLLDV 181

Query: 201 TIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFG-----GKFVSEGGDFSV 247
            + E+ R  L+++G +     +         +G S + A   G           GG   V
Sbjct: 182 QVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGPLSGAAAVRHAGGLLGV 241

Query: 248 KGVLDRFSFETVLHAL-ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
             +L        L AL +R  A+  LA+P L A SG +ASF +GG+  Y+        T+
Sbjct: 242 NALLS-----ARLSALAQRGEAV-LLAQPQLLARSGATASFQAGGELPYRATDKEGNGTT 295

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPS 364
           +    YGV L  TP + + G +  RI+ E S  +P + + AG  P+ R R+A T   + S
Sbjct: 296 LF-KPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAG--PALRKRRAVTEFNVHS 352

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           G T+VL G L  +    ++G+P LS++P++GALF   R    ETE+ I  TP +V P
Sbjct: 353 GQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTPTIVSP 409


>gi|317403407|gb|EFV83920.1| hypothetical protein HMPREF0005_02046 [Achromobacter xylosoxidans
           C54]
          Length = 453

 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 166/390 (42%), Gaps = 37/390 (9%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G+  ++ +G ++V+       V  V + D      +    R + +F +  G +++ +   
Sbjct: 25  GQTLEMQVGESRVL---AESGVTRVAIGDSQVLSAIATDSREVVVFARTEGVSSIQVWAD 81

Query: 105 DGKQMLNLDIL---IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
            G Q  ++ +    + R  A ++  L R       R  +V   VV+ G   +  D  R  
Sbjct: 82  GGVQAYDVHVAAAGVTRLRAEVDALLARI---PGARSSLVGGRVVVEGDDLSDDDHARIA 138

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVTIAEVRRDILKQIGFQHSIT 220
            L+E +               +VM+     G D  V L V + E+ R  L++IG +    
Sbjct: 139 ALAEHY--------------PEVMDFTGRVGWDSMVQLDVQVVEMPRSRLREIGVRWEGL 184

Query: 221 GSSSGPSKSFAADFG--GKFVSEGGDF-----SVKGVLDRFSFETVLHA----LERATAI 269
            +  G +   A D G  G+    G         V  V   F    +L A    L ++   
Sbjct: 185 -TQGGVNAGLAWDAGSLGRMARPGEAVIDTPAPVSSVAGYFGVNALLSARIAALAQSGEA 243

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             LA+P L A SG SA+F +GG+  Y + + S G  +     YGV L  TP +   G I 
Sbjct: 244 VMLAQPQLLARSGASATFLAGGEVPYVS-TDSRGNPTTLFKPYGVSLRITPRIDRNGVIR 302

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
             I+ E S   + +     P+ R R+A T   + SG T+V+ G L  +      G+P L 
Sbjct: 303 SLIEVEASSVDMALTGASGPALRTRRASTEFNVRSGDTLVIGGFLSRERADDSSGLPGLK 362

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IPILGALF + R+   ETE+ I  TP +V
Sbjct: 363 DIPILGALFASRRYQLRETELAIFVTPRIV 392


>gi|237653358|ref|YP_002889672.1| type II and III secretion system protein [Thauera sp. MZ1T]
 gi|237624605|gb|ACR01295.1| type II and III secretion system protein [Thauera sp. MZ1T]
          Length = 479

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 169/385 (43%), Gaps = 48/385 (12%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           D Q + V D       V   R + L     G   + +    G+       + + D A + 
Sbjct: 70  DAQRLAVGDAKVLSAAVLDDREILLIANGPGDTMLQVWTRSGRSQRIKITVRQTDTARIA 129

Query: 125 MTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
             L+ F+ D   +R   + D VV+ G   +  +  +  EL++ F               +
Sbjct: 130 RDLQGFLHDVPRLRTRTIGDNVVIEGEGLSDAERDKVTELAKRF--------------PQ 175

Query: 184 VMNLLNIAGEDQV-TLKVTIAEVRRDILKQIGFQHSITGS-------------SSGPSKS 229
           +++  +  G D++    V   E+ R  L+ +G   +  G               +    +
Sbjct: 176 LIDFTSRVGLDRMFAFDVRFVEISRSGLRDLGIDWTTQGKPLLGIGVIGDLYHDNRTGAT 235

Query: 230 FAADFG-GKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                G G+  SE             + ++ G     SF   L+ L +      LA P L
Sbjct: 236 VTRTLGSGELSSEVEIEANRVSPFAANVALVG-----SFFGRLNLLAQKGDAVILASPRL 290

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH-FTPTVLSPGRIGLRIQTEV 336
           +A +   ASF +GG+ +   V+S+TG  SVT  +YG+ L+   P   + G I  RI+TEV
Sbjct: 291 SARNRGEASFLAGGE-IPVPVASATGTPSVTFKEYGIRLNILEPVADAAGTIRARIRTEV 349

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           S     V A  +P    R+ +T   L +G T+VL+G+L+ + Q  +  +P L ++P++G 
Sbjct: 350 SSLDRSVAAQGVPGLLSRRTETEFNLRNGETLVLSGVLQREQQSDENALPHLGELPVIGR 409

Query: 397 LFRNSRFNREETEIFIAATPFLVKP 421
           LFR++RFN  E+E+ +  TP+L++P
Sbjct: 410 LFRSTRFNSRESELVVFVTPWLLEP 434


>gi|33596527|ref|NP_884170.1| putative secretory apparatus [Bordetella parapertussis 12822]
 gi|33566296|emb|CAE37209.1| putative secretory apparatus [Bordetella parapertussis]
          Length = 470

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 158/356 (44%), Gaps = 51/356 (14%)

Query: 89  LFGKNVGQANV-ILIGHDGKQMLNLDIL------IERDIAHLEMTLRRFIADSNIRVEMV 141
           LF +  G ++V I  G   +Q   +++L      +  ++A L   + R  + +      V
Sbjct: 82  LFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLREEVAALLARIPRAHSSA------V 135

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKV 200
              +V+ G   +  D  R   L++ +               +V++     G D+ V L V
Sbjct: 136 GAHIVIEGSQLSEDDHARIAALAQRY--------------PEVLDFTGRVGWDRMVLLDV 181

Query: 201 TIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFG-----GKFVSEGGDFSV 247
            + E+ R  L+++G +     +         +G S + A   G           GG   V
Sbjct: 182 QVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGPLAGAAAVRHAGGLLGV 241

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
             +L        L AL +      LA+P L A SG +ASF +GG+  Y+        T++
Sbjct: 242 NALLS-----ARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYRATDKEGNGTTL 296

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSG 365
               YGV L  TP + + G +  RI+ E S  +P + + AG  P+ R R+A T   + SG
Sbjct: 297 FK-PYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAG--PALRKRRAVTEFNVHSG 353

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            T+VL G L  +    ++G+P LS++P++GALF   R    ETE+ I  TP +V P
Sbjct: 354 QTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTPTIVSP 409


>gi|91777217|ref|YP_552425.1| putative type II and III secretion system outermembrane protein,
           secretin [Burkholderia xenovorans LB400]
 gi|91689877|gb|ABE33075.1| Putative type II and III secretion system outermembrane protein,
           secretin [Burkholderia xenovorans LB400]
          Length = 595

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 161/346 (46%), Gaps = 26/346 (7%)

Query: 89  LFGKNVGQANVILIG-HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
           L   NV   +++L+G  DG  + +L +  ++ IA L+ T+R   A+ N  +E       L
Sbjct: 83  LLTANVVDGSLMLLGEQDG--ITSLVVWNDKGIA-LQTTVRIAKAEVNASLEQ------L 133

Query: 148 HGMVRTIQDSQRAVELSETFLS------QSGRNQYANSSSKKVMNLLNIAGEDQ----VT 197
             ++R++   +     S   LS       +G  + A    K V++       D     V 
Sbjct: 134 RAVLRSVAGLRIDAIGSNIVLSGVIHRDMAGTVKAATQEMKNVVDTTTFDEGDALRKTVH 193

Query: 198 LKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
            KV I EV R   + +G  +  +  G   G + S A     K ++ G  + + G+    +
Sbjct: 194 FKVQIMEVTRTGQRNLGIAWDSAFRGPQIGGAASVATG-AAKAITAGTSYFLAGIASNIT 252

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            + +  A+E   A   LA P L   SG +ASF +GGQ +    S + G TS+   DYG+ 
Sbjct: 253 SQ-INFAVENGDAY-VLAAPELNTKSGGTASFLAGGQ-VPIPQSGALGTTSIEYKDYGIK 309

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L   P V +   I   + TE+S+    V    MP +  R   + + + +G T+ ++GL+ 
Sbjct: 310 LSIVPVVDANNIISAHLTTEISQIDPSVTYAGMPGFLTRNTSSDISMRAGETLAISGLVS 369

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            D      G+P LS++PI+G LFR+ RF  +++++ I  TP +  P
Sbjct: 370 ADAANDSNGMPFLSQVPIIGQLFRSDRFRAKKSDLVIFVTPVISDP 415


>gi|121533454|ref|ZP_01665282.1| type II and III secretion system protein [Thermosinus
           carboxydivorans Nor1]
 gi|121308013|gb|EAX48927.1| type II and III secretion system protein [Thermosinus
           carboxydivorans Nor1]
          Length = 414

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 19/239 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG--------SSSGPSKSFAADFGGKFVSEGGDF 245
           +QV+L+  +  + R+  K +GF    +G        S+SG +K+   ++ G  +  G  +
Sbjct: 183 EQVSLEAQVVAINRNAAKDLGFDWQWSGLPANTEFDSTSGTTKT-TREYPG-VIKFGKAY 240

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
              G    F+F+  L AL  +   + LA+P +T I+G+ A    G +       +  G T
Sbjct: 241 D--GTPYEFTFQAKLSALITSGEAKLLAKPKITTINGKEAKILIGDRIPVLVERTENGKT 298

Query: 306 SVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVE 361
           + T    D G+ L +TP + + G I   + TEVS P +     +M +YRV  R+A T V 
Sbjct: 299 TTTIEYIDAGIKLTYTPRINADGYITAAVHTEVSTPTL---VPEMKAYRVTTREATTNVR 355

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  G T+V+ GL+ ++    K  +PLLS +P+LG LF +    + ETE+ I  T  +VK
Sbjct: 356 MKDGDTMVIGGLISNEESGGKNRVPLLSDLPVLGKLFESVHKTKNETEVVIFLTARIVK 414


>gi|167646061|ref|YP_001683724.1| general secretion pathway protein D [Caulobacter sp. K31]
 gi|167348491|gb|ABZ71226.1| general secretion pathway protein D [Caulobacter sp. K31]
          Length = 681

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 6/176 (3%)

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---VSSSTGATS 306
           +L+R S    L AL   T +  L+ P L  ++ Q+AS   G Q    T   ++SS+  +S
Sbjct: 479 LLNRSSIAATLDALSSVTHVEVLSAPNLMVLNNQTASLEVGDQVPVSTGSALNSSSVISS 538

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPS 364
           +   D GV+L  TP V S G + L I  EVS+  P +     D P+  VRK  T++ +  
Sbjct: 539 IEYRDTGVLLKITPRVNSGGLVLLDIAQEVSDVSPTLSSTI-DSPTISVRKIATSIAVQD 597

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T+ L GL++D+ ++L+ G+P LS +P+LGAL  +   +RE TE+ +  TP +++
Sbjct: 598 GQTVALGGLIRDNNKRLRNGVPFLSAVPVLGALAGSRDNSRERTELLVLLTPRVLR 653


>gi|303229539|ref|ZP_07316327.1| bacterial type II and III secretion system protein [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515664|gb|EFL57618.1| bacterial type II and III secretion system protein [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 399

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 156/341 (45%), Gaps = 42/341 (12%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
           ++H    MY F     Q  V + GH G +     +++E  +A            S+  +E
Sbjct: 86  MLHHLGDMYHFDIQDDQGVVTVTGHSGAKEHRHVVVVEPKMA------------SSTSLE 133

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
            V  TVV +G     +++ + V L+ T   + G N    S  + +          QV L+
Sbjct: 134 SVIKTVVPNGKFAVHKETNQIV-LNVTGDEEKGVNSIIQSVDRDM---------KQVRLE 183

Query: 200 VTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVLDRFS 255
            TI  +     K+ GF+ S   +TG     + S+ A  FG     E   F VK  L    
Sbjct: 184 ATIMAMEHSYTKETGFRWSWLSLTGHGKDKTNSYGAISFGKAPDGEAYKFFVKPELS--- 240

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVTTHDYG 313
                  LE +     +A P++ A++G++A    G +   + +++S+     S+   + G
Sbjct: 241 ------LLETSGKAVVIATPSIMALNGEAAHILIGERIPVIEESISNGERKRSIHYEEVG 294

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLA 371
           + L +TP V   G I   I+ EVS P++     +M SY++  R+A T V L  G  +V+ 
Sbjct: 295 IKLDYTPVVTKNGTIDTSIRAEVSSPIM---VSEMKSYKITTRQAQTRVRLQPGEVLVIG 351

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           GL+ +  Q+  E IP+L  IP+LG LFR+SR  ++  E+ I
Sbjct: 352 GLMDNRDQKQIEKIPILGDIPLLGKLFRHSRKTKDSVEMVI 392


>gi|311277674|ref|YP_003939905.1| type IV pilus secretin PilQ [Enterobacter cloacae SCF1]
 gi|308746869|gb|ADO46621.1| type IV pilus secretin PilQ [Enterobacter cloacae SCF1]
          Length = 412

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  + S P +       GKF +   D SV     R 
Sbjct: 180 QVELAAHIVTMNEKSLRELGVKWTLADADSPPGR-------GKFTTLSSDLSVTDATSRA 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          E  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLEFELSALEQQQQLEIIASPRLLASHLQPASIKQGSEIPYQVSSGDSGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL   R+ L+++   + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLDDRRVRLKLRISENMPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++GIPLL  IP LG LFR+   + E  E+ +  TP ++
Sbjct: 353 KSGETLALGGIFSQKNKSARDGIPLLGDIPWLGQLFRHDGKDHERRELVVFITPRII 409


>gi|296158514|ref|ZP_06841344.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
 gi|295891082|gb|EFG70870.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
          Length = 590

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 161/355 (45%), Gaps = 44/355 (12%)

Query: 89  LFGKNVGQANVILIG-HDGKQMLNLDILIERDIAHLEMTLRRFIADSN------------ 135
           L   NV   +++L+G  DG  + +L +  ++ IA L+ T+R   A+ N            
Sbjct: 74  LLTANVVDGSLMLLGEQDG--ITSLVVWNDKGIA-LQTTVRIAKAEVNASLEQLRAVLKS 130

Query: 136 ---IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
              +R++ +  ++VL G++                   +G  + A    K V++   +  
Sbjct: 131 VAGLRIDAIGSSIVLSGVIHR---------------DMAGIVKAATQDMKNVVDTTTVDE 175

Query: 193 EDQ----VTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
            D     V  KV I EV R   + +G  +  +  G   G + S A     K V+ G  + 
Sbjct: 176 GDALRKTVHFKVQIMEVTRTGQRNLGIAWDSAFKGPQIGGAASVATG-AAKAVTAGTSYF 234

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           + G+    + + +  A+E   A   LA P L   SG +ASF +GGQ +    S + G TS
Sbjct: 235 LAGIASNITSQ-INFAVENGDAY-VLAAPELNTKSGGTASFLAGGQ-VPIPQSGALGTTS 291

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +   DYG+ L   P V +   I   + TE+S+    V    MP +  R   + + + +G 
Sbjct: 292 IEYKDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYAGMPGFLTRNTSSDISMRAGE 351

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           T+ ++GL+  D      G+P LS++PI+G LFR+  F  +++++ I  TP +  P
Sbjct: 352 TLAISGLVSADAANGSNGMPFLSQVPIIGQLFRSDSFRAKKSDLVIFVTPVISDP 406


>gi|110632479|ref|YP_672687.1| Flp pilus assembly protein secretin CpaC-like [Mesorhizobium sp.
           BNC1]
 gi|110283463|gb|ABG61522.1| Flp pilus assembly protein secretin CpaC-like protein
           [Chelativorans sp. BNC1]
          Length = 473

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 189/422 (44%), Gaps = 49/422 (11%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G+++ I + K + L    + + + V+DPT AD+        +++GK+ G+  V  +   G
Sbjct: 82  GQRLIIEIGKGLQLSGTENAESLFVADPTIADIKESPGEAHFIYGKSAGETTVTGVDLGG 141

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +   D+++  ++  ++  L +    + I +     +V   G V   Q    A+E  E 
Sbjct: 142 RTLFQYDMVVIYNLDEMQRMLSQRFPAARITIRSARGSVYATGTVPDQQTYDAAIESLEK 201

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
            + +S            ++N + +A    + L +   EV RD L+  G    +  S+  P
Sbjct: 202 SIPES-----------VLINEIAVAESPIIRLDIKFMEVSRDRLETYG----VNWSALSP 246

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           S  +            GD   +G  D   F  +L  L+   A   L++ TLT I  + AS
Sbjct: 247 SNHY----------RTGDIRGRG-HDVNKFMKLL--LDNGVAT-ILSDTTLTTIGRKKAS 292

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEP--VI 341
           F +G +    T S + GA S    DY   G  + FTP +L  G++ L I+ E+SEP   +
Sbjct: 293 FMAGEEIAIPTHSVNNGAASFGV-DYKFVGFNIGFTPQLLPGGKVSLAIEAEISEPRQTV 351

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI----QQLKEGIPLLSKIPILGAL 397
             ++G +P    RK +T V+L SG + +LAGL + D      Q +    ++ +  +L +L
Sbjct: 352 QFSSGPVPYVAARKLNTNVDLHSGESFILAGLSRMDTTGAHDQPRRNWGVVGE--VLRSL 409

Query: 398 FRNSRFNREETEIFIAATPFLV---KPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
             +   +    +I +  TP+     KP A  +  L R +  + + + +K F   R   IY
Sbjct: 410 AGHGSVSAHNRDIAVVVTPYFGASDKPSAADITGLQRSNIEFILSNKSKPFSSAR---IY 466

Query: 453 GP 454
           GP
Sbjct: 467 GP 468


>gi|323142233|ref|ZP_08077067.1| bacterial type II/III secretion system short domain protein
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413296|gb|EFY04181.1| bacterial type II/III secretion system short domain protein
           [Phascolarctobacterium sp. YIT 12067]
          Length = 364

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 127/249 (51%), Gaps = 22/249 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-----TGSSSGPSKSFAADFGG 236
           ++++  L+IA   QVTL+  I  V R+  K +G +            +    S ++++ G
Sbjct: 104 RQLLPKLDIATR-QVTLEAKIIAVSREDSKNMGVRWDWDTIPQRAQETNNGDSDSSNYDG 162

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
            F    G F+       F F   L+AL  +   R LA P +  I G+ AS   G     +
Sbjct: 163 SFKFWRG-FA-------FRFNATLNALINSGKARILATPRIITIPGKEASIFIGDHIPVQ 214

Query: 297 TVS-SSTGATSVTTH-DYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAGDMPSYRV 353
           T    S+G+ + T + D G+ L + P +   G+ +   + TEVS PV+     ++ +YR+
Sbjct: 215 TEKHDSSGSYTATEYLDAGIKLQYAPIISEDGKMVTASVHTEVSTPVL---ISELKNYRI 271

Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R ADT V + SG T+V+ GL+ ++ Q+  + +P LSKIP+LG LF+N   +  +TE+ 
Sbjct: 272 TSRTADTNVRMYSGETLVIGGLISEEQQRTMQKVPFLSKIPLLGELFKNRSRSHNKTEVL 331

Query: 412 IAATPFLVK 420
           +  TP + +
Sbjct: 332 LLLTPHITE 340


>gi|319788661|ref|YP_004148136.1| type II and III secretion system protein [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317467173|gb|ADV28905.1| type II and III secretion system protein [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 502

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 178/405 (43%), Gaps = 49/405 (12%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV-ILIGHDGKQ 108
           +++   +  + +VP  ++ V V D     V       +   G   G+ NV + +G+  ++
Sbjct: 94  LTLHAGEAAVRRVPAALRRVAVGDGEILSVHTVGRNELVFIGTQPGETNVHLWLGNGTQR 153

Query: 109 MLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + +++   R    +  T+R  + +  ++ V  V   VV+ G       S +   L + +
Sbjct: 154 TVAVNVTGSRSDG-VAATVRELLGNHPDVAVRAVGSNVVISGGELDAATSAKIAALQKLY 212

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK------VTIAEVRRDILKQIG--FQHSI 219
                              +LN AG D V ++      VTI E  +D ++ +G  +  +I
Sbjct: 213 -----------------PQVLNFAGSDPVGMRPMVRMDVTIMEFNKDAVEDLGIRWDSTI 255

Query: 220 TGSSSGPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHA-----LE 264
           +G   G  +    +   + + E               + G    F   T + +     + 
Sbjct: 256 SGPIGGLIRDVTTNDYFRVLPEDNRTFDEIREQLPTRLPGPQGYFGIATTIGSQINLLMS 315

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           R  A   LAEP L+A SG +A+F  GG+ +   + S  G T +   +YG+ L+ +P V S
Sbjct: 316 RGKAW-VLAEPKLSARSGSNATFLVGGE-VPIVIPSVLGQTQIEYKEYGIRLNISPNVNS 373

Query: 325 PGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
              +   I  EVS  +P + V    +P +  R+A+T + + +G TIV++GLL  +  +  
Sbjct: 374 AREVATSIMAEVSRIDPSVAVQG--VPGFLTRRAETEINVLAGQTIVISGLLDREAAKSV 431

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +  P+L  IPILG LFR+  F    TE+ I  TP +V P +  +L
Sbjct: 432 DKFPILGDIPILGRLFRSDGFRGNRTELVIFVTPHIVTPDSPENL 476


>gi|217967423|ref|YP_002352929.1| type II and III secretion system protein [Dictyoglomus turgidum DSM
            6724]
 gi|217336522|gb|ACK42315.1| type II and III secretion system protein [Dictyoglomus turgidum DSM
            6724]
          Length = 1421

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 12/226 (5%)

Query: 195  QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            QV + V + EV R+ +K IG + S    S+G      A+ G +      D  V  +++  
Sbjct: 1207 QVKIDVQVIEVSRENVKDIGIEWSTGSISTGLQ--ITANLGWQ------DLRV-SIVNPG 1257

Query: 255  SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
                 + ALE     R LA+P++T +SG++     G +    +  +  G   V+  D G+
Sbjct: 1258 QISANIRALETQNKARILAQPSMTTLSGKATRIMIGDRVPLISYDAQ-GNRQVSFVDVGI 1316

Query: 315  VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            +L+ TPTV + G I   I  +VS   I     D+P    R+A T V L +G T+ L GLL
Sbjct: 1317 ILNVTPTVNADGTITANINPQVS--TIQGYVSDVPIISTREAQTIVNLKNGETLALGGLL 1374

Query: 375  KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +       +PLL  IPILG LF+  +  + E E+ I  TP L++
Sbjct: 1375 RQEEIDSMSKVPLLGDIPILGELFKARKTQKVERELIILITPKLIE 1420


>gi|187921506|ref|YP_001890538.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
 gi|187719944|gb|ACD21167.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
          Length = 561

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 6/228 (2%)

Query: 196 VTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           V  KV I EV R   + +G  +  +  G   G + S A     K V+ G  + + G+   
Sbjct: 186 VHFKVQIMEVTRTGQRNLGIAWDSAFKGPQIGGAASVATG-AAKAVTAGTSYFLAGIASN 244

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            + + +  A+E   A   LA P L   SG +ASF +GG  +    S + G TSV   DYG
Sbjct: 245 ITSQ-INFAVENGDAY-VLAAPELNTKSGGTASFLAGGT-VPIPQSGALGTTSVEYRDYG 301

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L   P V +   I   + TE+S+    V  G MP +  R   + + + +G T+ ++GL
Sbjct: 302 IKLSIVPVVDANNIISAHLTTEISQIDPSVTYGGMPGFLTRNTTSDISMRAGETLAISGL 361

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  D      G+P LSK+PI+G LFR+  F  +++++ I  TP +  P
Sbjct: 362 VSADAANDTTGMPFLSKVPIIGQLFRSDAFRAKKSDLVIFVTPVISDP 409


>gi|163856388|ref|YP_001630686.1| putative outer membrane protein [Bordetella petrii DSM 12804]
 gi|163260116|emb|CAP42417.1| putative outer membrane protein [Bordetella petrii]
          Length = 458

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 143/316 (45%), Gaps = 33/316 (10%)

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
           LI+ ++     TL R I   N+R  +V   VVL G      D  R   L++ +       
Sbjct: 101 LIQEEV----QTLLRHI--PNVRSSVVGGNVVLEGDDLADDDRARVAALAQRY------- 147

Query: 175 QYANSSSKKVMNLLNIAGEDQ-VTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSF 230
                   ++++     G D  V L V + E+    L++ G Q    S  G  +G     
Sbjct: 148 -------PRILDFTGQVGWDNMVLLDVQVVEIPSARLREFGLQWDALSQGGLHAGGVWQP 200

Query: 231 AADFGGKFVSEGGDFSVKGV-------LDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
            +       ++    S++G+       ++      +    +R  A+  LA+P L A SG 
Sbjct: 201 GSSLQLADAAQPPALSMQGMGAAGYFGVNALLSARLAALAQRGEAV-MLAQPQLLARSGT 259

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           +ASF +GG+  Y T + + G +S     YGV L+ TP +   G I  RI+ E S     +
Sbjct: 260 TASFLAGGEVPYST-TDAQGNSSTEFKPYGVSLNITPRIDRNGAIRSRIEVEASSIDTSL 318

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +    P+ R R+A T   + SG T+VL G L  +    + G+P+L  IP+LGALF + R 
Sbjct: 319 SVAGGPALRTRRAVTEFNVRSGQTLVLGGFLSRERSHERSGLPVLQDIPLLGALFSSRRD 378

Query: 404 NREETEIFIAATPFLV 419
             +ETE+ I  TP +V
Sbjct: 379 QHKETELAIFVTPRIV 394


>gi|56460012|ref|YP_155293.1| Flp pilus assembly protein CpaC [Idiomarina loihiensis L2TR]
 gi|56179022|gb|AAV81744.1| possible Flp pilus assembly protein CpaC [Idiomarina loihiensis
           L2TR]
          Length = 404

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 160/355 (45%), Gaps = 44/355 (12%)

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           D+L+SD +  DV V       L G  VG+A++ L   +   +  L I++    A L+++L
Sbjct: 49  DILISDESVVDVHVLDNSRAILRGVGVGKADIWLKSEE--VLKELKIMV---TASLKLSL 103

Query: 128 RRFI-----ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
              +     A+ ++     S   VL G V     S+R  E  E            + + +
Sbjct: 104 EGRLEAISEAEQSLNKTEKSGLTVLSGKV-----SKRNYEELEKI----------SENHE 148

Query: 183 KVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           +++NL     E+   +TL+V I E +R  L+ +G +    G++SGP+  F++   G F  
Sbjct: 149 EILNLTESFQEEPPMLTLRVNILETKRQYLEDLGIRWQ--GTTSGPT--FSSSLSGLFEW 204

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           +                + L  ++R    + LA P L+  SG+ A+F +GG+     V +
Sbjct: 205 DA------------EINSQLMLMQRRGLAKLLANPVLSTQSGEKATFLAGGELPIPQVVA 252

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G   VT  +YG+ L   P VL   RI  ++  E+S     V+   +P    R+ ++  
Sbjct: 253 Q-GMQDVTFREYGIRLVIQPVVLDDNRIKTQLHAELSNIDPAVSVSGVPGILSRRTESVF 311

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
               G T+VL+GLL  D     + IP L  +PIL   FR+ +   + TE+ I  T
Sbjct: 312 LSNDGDTLVLSGLLSTDESAQDDQIPGLGSLPILENAFRSQQNREQTTELIIMVT 366


>gi|323529159|ref|YP_004231311.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
 gi|323386161|gb|ADX58251.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
          Length = 597

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 168/347 (48%), Gaps = 28/347 (8%)

Query: 89  LFGKNVGQANVILIG-HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
           L   NV   N++L+G  DG  M +L +  E+ IA L+ T+R   A+ N  ++       L
Sbjct: 77  LITANVVDGNLMLLGEQDG--MTSLVVWNEKGIA-LQTTVRIAKAEVNASLQQ------L 127

Query: 148 HGMVRTIQDSQRAVELSETFLSQS-GRNQYA--NSSSKKVMNLLNIAGEDQ-------VT 197
             +++++   Q     S   LS    R+  A   S+++ + N+++    D+       V 
Sbjct: 128 RAVLKSVSGLQIDAIGSNIVLSGVVHRDMVAVIKSATQDMKNVIDTTTVDEGEALRKTVH 187

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLDRF 254
            KV I EV R+  +++G   +   +  GP     +  A    K V+ G  + + G+    
Sbjct: 188 FKVQIMEVTRNTQRKLGI--AWDSAFRGPQIGGAASVASGAAKAVTAGTSYFLAGIASNI 245

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           S + +  A+    A   LA P L   SG +ASF +GGQ +    S + G T+V   DYGV
Sbjct: 246 SSQ-INFAVNNGDAF-ILAAPELNTKSGGTASFLAGGQ-VPIPQSGALGTTNVMYKDYGV 302

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L   P V + G I   + TE+S+    V+ G +P +  R   + + + +G T+ ++GL+
Sbjct: 303 KLSINPVVDANGIISAHLTTEISQIDPTVSYGGLPGFLTRSTSSDISMRTGETLAISGLI 362

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             D     +G+P L +IP++G LFR+  F  +++++ I  TP +  P
Sbjct: 363 SADSVNDSDGMPFLGQIPVIGQLFRSDSFRAKKSDLVIFVTPLISDP 409


>gi|304311185|ref|YP_003810783.1| Probable outer membrane channel protein [gamma proteobacterium
           HdN1]
 gi|301796918|emb|CBL45131.1| Probable outer membrane channel protein [gamma proteobacterium
           HdN1]
          Length = 470

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 116/249 (46%), Gaps = 18/249 (7%)

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
           L N+     V L V + EVR+  LK++G Q     +++GP+      F G    E  D S
Sbjct: 196 LPNVKLAAMVMLDVHVVEVRKQDLKKLGVQWD--SATAGPAYGVLGQFRGAGNFEK-DTS 252

Query: 247 VKGVL---DR-----------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           V G L   +R            S  + L+ L+       LA+P L   SG  ASF +GG+
Sbjct: 253 VFGFLMTENRSPIKVGNGYIGTSIGSKLNFLQSNGVAHVLAQPKLVTRSGSEASFLAGGE 312

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
               TV+      ++     GV+L  +P     G I   I  EVS+    V    +P + 
Sbjct: 313 IPIPTVTKDNQINTIFKQ-VGVILKISPKADPDGFIETAINVEVSQVDASVQVLGIPGFI 371

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            RK    + + SG T+ ++G+L ++  +  + +P L  IPILG LF++  F +  TE+ I
Sbjct: 372 TRKTKMEMNVQSGQTMAISGMLSEESSKAIDKMPGLGSIPILGELFKSRDFRQNTTELMI 431

Query: 413 AATPFLVKP 421
             TP+LV P
Sbjct: 432 FVTPYLVDP 440


>gi|157376152|ref|YP_001474752.1| Type II secretory pathway component PulD-like protein [Shewanella
           sediminis HAW-EB3]
 gi|157318526|gb|ABV37624.1| Type II secretory pathway component PulD-like protein [Shewanella
           sediminis HAW-EB3]
          Length = 696

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 118/235 (50%), Gaps = 19/235 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSE--GGDFSVKGVL 251
           QV L VTIAEV+     + GF+ +++ G+ SG +K      GG  + E  GG FS K   
Sbjct: 450 QVLLSVTIAEVKLTGEFKRGFEFALSSGNFSGSTK------GGLGLDEIVGGTFSWKSGA 503

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSSTGATS 306
           +    E +   +E  + +  L++P+L    G  A+   G +         + S      +
Sbjct: 504 N----EIIGKFVEENSQVNILSKPSLLVRDGTEANINVGDKIPVSSGSSSSGSGEVVTEN 559

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSG 365
           +T  + G+ L  TPTV + G + + I  E+S  V+G V  G  P++  R   T V   +G
Sbjct: 560 ITYRETGIKLTVTPTVNAQGVVIMEINQEISNQVVGPVGKGGNPTFFDRSIKTEVVADTG 619

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            TI+L GL+ DD     +G+P L  IP++GALF +   N  +TE+ I  TP +V+
Sbjct: 620 QTILLGGLISDDTTNSNKGVPYLKSIPLIGALFESDSKNNTKTELVIMVTPKIVE 674


>gi|311105392|ref|YP_003978245.1| type II and III secretion system family protein 1 [Achromobacter
           xylosoxidans A8]
 gi|310760081|gb|ADP15530.1| bacterial type II and III secretion system family protein 1
           [Achromobacter xylosoxidans A8]
          Length = 456

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 118/253 (46%), Gaps = 24/253 (9%)

Query: 184 VMNLLNIAGEDQ-VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           V++     G D+ V L V + E+    L+ +G +     S  G +   A D G       
Sbjct: 147 VLDFTGQVGWDRMVQLDVQVVEIPTSKLRDLGVRWDGM-SQGGINAGLAWDAGSRGRVSR 205

Query: 236 ---------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                    G+  S  G F V  +L      + +  L ++     LA+P L A SG SA+
Sbjct: 206 PGEEIIETMGRVSSPAGYFGVNALLS-----SRIAMLAQSGEAVMLAQPQLLARSGASAT 260

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
           F +GG+  Y + + + G ++     YGV+L  TP V   G I   I+ E S     ++  
Sbjct: 261 FLAGGEVPYSS-TDTRGNSTTLFKPYGVMLRITPRVDRNGIIRSLIEVEASSVDNALSVP 319

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P+ R R+A T   + SG T+V+ G L  +  +  +G+P L  IP+LGALF + R+   
Sbjct: 320 GGPALRTRRASTEFNVRSGDTLVIGGFLSRERDEASDGLPWLKDIPVLGALFSSRRYQLR 379

Query: 407 ETEIFIAATPFLV 419
           ETE+ I  TP L+
Sbjct: 380 ETELAIFVTPKLI 392


>gi|303231123|ref|ZP_07317863.1| bacterial type II and III secretion system protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514254|gb|EFL56256.1| bacterial type II and III secretion system protein [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 399

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 44/346 (12%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
           ++H    MY F     Q  V + G  G +     +++E  +A            S+  +E
Sbjct: 86  MLHHLGDMYHFDIQDNQGVVTVKGDSGTKEHRHVVVVEPKVA------------SSTSLE 133

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
            V  TVV +G     +++ + V L+ T   + G N    S  + +          QV L+
Sbjct: 134 SVIKTVVPNGKFAVHKETNQIV-LNVTGDEEKGVNSIIQSVDRDM---------KQVRLE 183

Query: 200 VTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVLDRFS 255
            TI  +     K+ GF+ S   +TG  +  + S+ A  FG     E   F VK  L    
Sbjct: 184 ATIMAMEHSYTKETGFRWSWLSLTGHGNDKTNSYGAITFGKAPDREAYKFFVKPELS--- 240

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVTTHDYG 313
                  LE +     +A P++ A++G++A    G +   + +++S+     S+   + G
Sbjct: 241 ------LLETSGKAVVIATPSIVALNGEAAHILIGERIPVIEESISNGERKRSIHYEEVG 294

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLA 371
           + L +TP V   G I   I+ EVS P++     ++ SY++  R+A T V L  G  +V+ 
Sbjct: 295 IKLDYTPIVTKNGAIDTSIRAEVSSPIM---VSELKSYKITTRQAQTRVRLQPGEVLVIG 351

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE--IFIAAT 415
           GL+ +  Q+  E IP+L  IP+LG LFR+SR  ++  E  IF+ AT
Sbjct: 352 GLMDNRDQKQIEKIPVLGDIPLLGKLFRHSRKTKDSVEMVIFVKAT 397


>gi|313680282|ref|YP_004058021.1| type II and III secretion system protein [Oceanithermus profundus
           DSM 14977]
 gi|313152997|gb|ADR36848.1| type II and III secretion system protein [Oceanithermus profundus
           DSM 14977]
          Length = 518

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 18/230 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++V I EV + +++ +G + +    S G   S   D G   +     F     L   
Sbjct: 290 QVNVQVRIQEVTQTLVRNLGLKWNTI--SGGNIVSSIVDNGLSLI-----FDATRSLASL 342

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +    L ALE+    RT+ +  +T ++ Q+    SG     K V           +D GV
Sbjct: 343 NIVATLEALEKQGLSRTVNDSNITVLNNQTGFIQSGFTIFVKRVVGD--KVEKVPYDIGV 400

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           ++  TP + + G+I L++++EVS+     PV     GD+     +K++TT+ L +G T+V
Sbjct: 401 IVRVTPQITADGQIVLKVESEVSDIKERNPV----DGDVDVLSKQKSETTLRLDNGQTVV 456

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L GL+K    +  +G+P+L  IP+LG+LF+ +  N E+ E+ I  T  +V
Sbjct: 457 LGGLIKTKRDKTTQGVPVLMHIPVLGSLFKQTTVNNEDNELLIVITANIV 506


>gi|320529858|ref|ZP_08030935.1| type IV pilus secretin PilQ [Selenomonas artemidis F0399]
 gi|320137876|gb|EFW29781.1| type IV pilus secretin PilQ [Selenomonas artemidis F0399]
          Length = 426

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 26/237 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------- 247
           QV+L+  +  V +   KQ+G   + +     PS     D GG+                 
Sbjct: 187 QVSLEARVVSVSKAAAKQLGVDWTWSALPQYPS----VDAGGRVTGRSTGGGRTGTSAPG 242

Query: 248 --------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--KT 297
                    GV   F +   + AL      + LA P +T + G+ A    G +      T
Sbjct: 243 IIRFGRGPAGVPYEFYYSAAISALITDGKAKMLARPNVTTVQGREALINIGAEVPVPRTT 302

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK-- 355
           +S     +++   + G++L +TP V + G I  R+ TEVS PV      ++ +YR +K  
Sbjct: 303 MSDHVTTSAIDYREAGIILRYTPRVTADGTITARVHTEVSTPVY---VEELKAYRFQKRS 359

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           ADTTV L  G T+V+ GL+  D  +    IP L  +P+LGA FR+ R N+ E+E+ I
Sbjct: 360 ADTTVRLRDGETMVIGGLIDSDESRSLSKIPFLGDLPVLGAFFRSVRTNKTESELMI 416


>gi|157148976|ref|YP_001456295.1| outer membrane porin HofQ [Citrobacter koseri ATCC BAA-895]
 gi|157086181|gb|ABV15859.1| hypothetical protein CKO_04814 [Citrobacter koseri ATCC BAA-895]
          Length = 412

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +QV L   I  +    L+++G + ++  +    S G   S A+D      +    F++  
Sbjct: 179 EQVELAAHIVTINEKSLRELGVKWTLADAQLAGSPGQVTSLASDLSVAAATSRVGFNIGR 238

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
           +  R   +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV  
Sbjct: 239 INGRL-LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEF 297

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367
            +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ DT VE+ SG T
Sbjct: 298 KEAVLGMEVTPTVLPKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIDTQVEVKSGET 357

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L G+     +  K+ +PLL  IP LG+LF +     E  E+ +  TP LV
Sbjct: 358 LALGGIFSRKNKSAKDSVPLLGDIPWLGSLFSHDGKENERRELVVFITPRLV 409


>gi|313895052|ref|ZP_07828609.1| type IV pilus secretin PilQ [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975947|gb|EFR41405.1| type IV pilus secretin PilQ [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 426

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 26/237 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------- 247
           QV+L+  +  V +   KQ+G   + +     PS     D GG+                 
Sbjct: 187 QVSLEARVVSVSKAAAKQLGVDWTWSALPQYPS----VDAGGRVTGRSTGGGRTGTSAPG 242

Query: 248 --------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--KT 297
                    GV   F +   + AL      + LA P +T + G+ A    G +      T
Sbjct: 243 IIRFGRGPAGVPYEFYYSAAISALITDGKAKMLARPNVTTVQGREALINIGAEVPVPRTT 302

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK-- 355
           +S     +++   + G++L +TP V + G I  R+ TEVS PV      ++ +YR +K  
Sbjct: 303 MSDHVTTSAIDYREAGIILRYTPRVTADGTITARVHTEVSTPVY---VEELKAYRFQKRS 359

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           ADTTV L  G T+V+ GL+  D  +    IP L  +P+LGA FR+ R N+ E+E+ I
Sbjct: 360 ADTTVRLRDGETMVIGGLIDSDESRSLSKIPFLGDLPVLGAFFRSVRTNKTESELMI 416


>gi|10956078|ref|NP_052165.1| exporter protein [Chlorobium limicola]
 gi|1688247|gb|AAB36938.1| exporter protein [Chlorobium limicola]
          Length = 461

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 188/446 (42%), Gaps = 99/446 (22%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++ +G +++     P+  + V V DP  AD ++ +   +YL GK +G  N+++    G  
Sbjct: 8   RVPLGESRIYRFAQPI--KRVAVGDPQVADYIMMNRSEIYLLGKKLGSTNLVVWDQKG-N 64

Query: 109 MLNLDILIERDIAHLEMTLRR-FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           + +  + + R    L+  L+  F  +++I ++ +   +VL G V     ++  + L   +
Sbjct: 65  VTSTPVQVSRGTTALQAFLKALFPKENDIHIDALGPALVLSGSVSDALVAESVIRLVTAY 124

Query: 168 ----------------------------LSQSGRNQYANS-------------------- 179
                                       L++S     A S                    
Sbjct: 125 FGGSVSKSSPESALIGTDAKALTGVIGELNKSTTASNAESFAFFKKTLMMGDEKGASGSA 184

Query: 180 ---SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFA 231
              S++ V+NLL +    QV L+V IA+V R  L+ +G   +     +TGS    S  F 
Sbjct: 185 GRDSTRGVINLLKVRDPQQVRLEVRIAQVSRSYLESLGLSVTKLTGDLTGSLGKLSTGFV 244

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           +D            +   +L +  ++  + A  + + ++ LAEPT+  +SG+   F  GG
Sbjct: 245 SD------------ATLDLLLKPDYDIKMGAKRKPSLLKILAEPTIVTMSGKEGYFLVGG 292

Query: 292 Q-HLYKTVSSSTGATSVTTHDYGVVLHFTPT----VLSPG---------RIGLR-IQTEV 336
           + +    V S      + T +       TPT    VL P          R+  R +    
Sbjct: 293 KIYTPSRVESQLDTAKLNTKN-------TPTAWVYVLRPSCWMQAVFHSRLYPRFLNLTR 345

Query: 337 SEPVIGVNAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +  ++G+       +R+  A   T VE+  G  +V+ GL  D++    + +PLL +IPIL
Sbjct: 346 NHSLLGLQK---IGHRLNSAPVSTAVEMNEGENLVIGGLKLDNLTNAIDSVPLLGEIPIL 402

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           GALFRN+  N E+TE+ +   P LVK
Sbjct: 403 GALFRNTDKNAEKTELMVIVRPTLVK 428


>gi|146339226|ref|YP_001204274.1| putative general secretion pathway protein D signal peptide
           [Bradyrhizobium sp. ORS278]
 gi|146192032|emb|CAL76037.1| Putative general secretion pathway protein D; putative signal
           peptide [Bradyrhizobium sp. ORS278]
          Length = 778

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 122/256 (47%), Gaps = 27/256 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGDFSVKGV 250
           + QV ++ TIAEV      Q G Q  I     G  P      D     ++  G+  +   
Sbjct: 495 QRQVAIEATIAEVTLTDDLQFGVQSYIMSRDLGLKPDTGSFGDAASTALATAGNVVLNRA 554

Query: 251 LDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS- 301
           +  F+F          +L AL   T ++ L+ P+L  I  Q A+   G +   +T +++ 
Sbjct: 555 IPGFNFLVGSATTPRLILSALHAVTDVKVLSNPSLVVIDNQVATLQVGNEIPIQTGTATV 614

Query: 302 -TGATSV-TTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------MPS 350
            TG  +V +T DY   G++L   P + + G + L ++ E+S  + G N G+       P+
Sbjct: 615 LTGNNTVASTTDYRSTGIILRVVPRINANGNVRLDVEQEISNALNGTNGGNGATNSLTPT 674

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              RK  ++V + SG T++LAGL+ D   + + GIP + +IP +G LF  S  N + TE+
Sbjct: 675 VATRKLRSSVAVASGQTVLLAGLISDTQNRTRNGIPGIDQIPGIGDLFSQSGNNVQRTEL 734

Query: 411 FIAATPFLVKPVAMRD 426
            I      ++P  +RD
Sbjct: 735 II-----FIRPQIIRD 745


>gi|291280100|ref|YP_003496935.1| hypothetical protein DEFDS_1724 [Deferribacter desulfuricans SSM1]
 gi|290754802|dbj|BAI81179.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 796

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 6/173 (3%)

Query: 249 GVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
           G L R F+ +  L ALE    +RT++ P +T +  Q A   SGG  +      +T    V
Sbjct: 629 GNLSRTFNLDIALSALESQNKVRTISSPRITTLDNQEAEIKSGGTAIIVPTGDNTETEEV 688

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              D G+ L   P + S   I L I+ E S   +G    +  +   +KA T V L +G T
Sbjct: 689 ---DVGIKLKIKPHITSNNMIYLDIEVEKSS--LGAVTANTATTEEKKAKTQVLLANGET 743

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            V+ G+ +D+  ++ +G+P LSKIPILGALFR       + E+ +  TP +V+
Sbjct: 744 TVIGGIYEDEKSEVNQGVPFLSKIPILGALFRAKNNTVTKRELLVFITPKIVE 796


>gi|206901782|ref|YP_002250755.1| bacterial type II and III secretion system protein [Dictyoglomus
            thermophilum H-6-12]
 gi|206740885|gb|ACI19943.1| bacterial type II and III secretion system protein [Dictyoglomus
            thermophilum H-6-12]
          Length = 1256

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 12/226 (5%)

Query: 195  QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            QV + V + EV R+ +K IG +      S+G      A+ G +      D  +  +++  
Sbjct: 1043 QVKIDVQVIEVSRENIKDIGIEWGTGSISTGLQ--ITANVGWQ------DLRI-SIINPG 1093

Query: 255  SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
                 + ALE     + LA+P++T +SG+S     G +    +  +  G   V+  D G+
Sbjct: 1094 QISANIKALESQNKAKILAQPSMTTVSGKSTRIMIGDRVPLISYDAQ-GNRQVSFVDVGI 1152

Query: 315  VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            +L+ TPTV + G I   +  +VS   I     D+P    R+A T V L +G T+ L GLL
Sbjct: 1153 ILNVTPTVNADGTITANLNPQVS--TIQGYVQDVPIISTREAQTIVNLKNGETLALGGLL 1210

Query: 375  KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +  +    +PLL  IPILG LF+  +  + E E+ I  TP +++
Sbjct: 1211 RQEEIESMSKVPLLGDIPILGELFKARKIQKVERELIILITPKIIE 1256


>gi|85711968|ref|ZP_01043022.1| possible Flp pilus assembly protein CpaC [Idiomarina baltica OS145]
 gi|85694154|gb|EAQ32098.1| possible Flp pilus assembly protein CpaC [Idiomarina baltica OS145]
          Length = 393

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 115/251 (45%), Gaps = 25/251 (9%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           LKVTI E+++  ++Q+G Q        GP+  +    G ++                   
Sbjct: 158 LKVTILEIKQQFVQQLGIQWD--SQIDGPNWQWGRQGGVQWSP--------------LLM 201

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
           + +  LE+  A + LA P LT  SGQ ASF +GG+     V    G   V+  +YGV L 
Sbjct: 202 SNIQLLEQQGAAKLLATPVLTTQSGQPASFLAGGEIPIPQVVGQ-GMQDVSFREYGVRLT 260

Query: 318 FTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
             PTV +  +I  ++  EVS  +P + VN   +P    R+ +  +    G T+VL+GLL 
Sbjct: 261 IEPTVSAESKITAKLSAEVSNIDPAVEVNG--VPGILTRRTEAVLSSRHGETVVLSGLLS 318

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
            D  + + G+P L ++PI G +F++     + TE+ I    F+   +   D  R      
Sbjct: 319 TDSSESEAGLPGLKQLPIAGEVFKHRGQRNQHTELLI----FVTSEIVAYDQQRHQLKQR 374

Query: 436 VEDDAKAFFFN 446
            +  AK ++  
Sbjct: 375 HQQQAKEWYLQ 385


>gi|186473164|ref|YP_001860506.1| type II and III secretion system protein [Burkholderia phymatum
           STM815]
 gi|184195496|gb|ACC73460.1| type II and III secretion system protein [Burkholderia phymatum
           STM815]
          Length = 451

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 108/224 (48%), Gaps = 6/224 (2%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
            KV I EV R   K IG         +GP  S    F G   + G +F + G+    +  
Sbjct: 187 FKVQIMEVTRTGQKDIGIAWD--SQFAGPQVS-GQGFIGSGAASGANFFLAGIASTIT-S 242

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
            +  A+    A   LA P L   SG +ASF +GG+ +    + + G T V    YG+ L+
Sbjct: 243 RINFAINNGDAF-ILAAPELNTKSGGTASFLAGGE-VPIPKAGALGTTDVEYKPYGIRLN 300

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P V +   I   +QTE+S+    V+ G  P +  R A + + L +G TI ++GL+  D
Sbjct: 301 IRPVVDANDIISATVQTEISQIDPSVSYGGFPGFLTRSASSDISLRAGETIAISGLVSAD 360

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                 G+P  +++PI+G LFR+  F  + +++ I  TP + +P
Sbjct: 361 ALNGSAGMPFFARLPIIGQLFRSDSFRAKNSDLVIFVTPLISEP 404


>gi|302326451|gb|ADL25652.1| putative bacterial type II/III secretion system protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 585

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 106/230 (46%), Gaps = 13/230 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           QVTL   I E R+     IG +   T   G     ++ F  DF GK +S+ G F   G+L
Sbjct: 338 QVTLACVIVEFRKGRSFAIGVRSGATRNVGERDIQARGFF-DFLGKDISKSGAFGKIGIL 396

Query: 252 -DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            DRF  E  L ++E     + LA P +T ++G  A         Y     S     +T +
Sbjct: 397 PDRFELE--LSSMEENNEAKVLARPRVTTLNGNKAELNVTNTVYYLVSQVSADGYPITDY 454

Query: 311 ---DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGG 366
              + G+ L  TPT+   G I L +  E+     G + GD P     R   TTV L  G 
Sbjct: 455 RSFNDGISLELTPTMTQDGLITLSVSPEIK--TAGRSTGDGPRDISSRNMKTTVVLRDGE 512

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           T+ L GL++ +  +++  +P L  IPILG LF  +    +E+E+ I  TP
Sbjct: 513 TLCLGGLIRKNKTEVRSAVPFLGSIPILGRLFSYTSEEEDESELAIFITP 562


>gi|261414950|ref|YP_003248633.1| type II and III secretion system protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371406|gb|ACX74151.1| type II and III secretion system protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 603

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 106/230 (46%), Gaps = 13/230 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           QVTL   I E R+     IG +   T   G     ++ F  DF GK +S+ G F   G+L
Sbjct: 356 QVTLACVIVEFRKGRSFAIGVRSGATRNVGERDIQARGFF-DFLGKDISKSGAFGKIGIL 414

Query: 252 -DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            DRF  E  L ++E     + LA P +T ++G  A         Y     S     +T +
Sbjct: 415 PDRFELE--LSSMEENNEAKVLARPRVTTLNGNKAELNVTNTVYYLVSQVSADGYPITDY 472

Query: 311 ---DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGG 366
              + G+ L  TPT+   G I L +  E+     G + GD P     R   TTV L  G 
Sbjct: 473 RSFNDGISLELTPTMTQDGLITLSVSPEIK--TAGRSTGDGPRDISSRNMKTTVVLRDGE 530

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           T+ L GL++ +  +++  +P L  IPILG LF  +    +E+E+ I  TP
Sbjct: 531 TLCLGGLIRKNKTEVRSAVPFLGSIPILGRLFSYTSEEEDESELAIFITP 580


>gi|327399337|ref|YP_004340206.1| type IV pilus secretin PilQ [Hippea maritima DSM 10411]
 gi|327181966|gb|AEA34147.1| type IV pilus secretin PilQ [Hippea maritima DSM 10411]
          Length = 704

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 127/282 (45%), Gaps = 36/282 (12%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           R ++   R VE+S++F  Q G     N  ++ + N     G                   
Sbjct: 445 RAVEIDARIVEISKSFERQLGIQWGGNFFNQNINNSKTFIG------------------- 485

Query: 212 QIGFQHSITGSSSG--PSKSFAADFGGKFV-----------SEGGDFSVKGVLDRFSFET 258
            +G   S    SSG  PS+SF+ D    FV           +     ++  VL  ++ + 
Sbjct: 486 -VGGSSSPVDVSSGLPPSESFSND---NFVVNLPAGLSDAPTSTVRLAIGNVLANYNLDL 541

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            L   E     + L+ P +  +  + A  +SG +  Y+  + ++GATSV+  +  + L  
Sbjct: 542 KLTMGEIEGYSKVLSTPKVITLDNEPAKISSGQEIPYQESAGASGATSVSFKEATLSLEV 601

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           TP +    ++ L+++ +   P    + G  P     + D+TV L +G TIV+ GL++   
Sbjct: 602 TPHITRNDQVILKLKIKKDSPDYSHSVGGEPPINTNEVDSTVILSNGQTIVIGGLMQSTT 661

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           Q+   G+P L +IP+LG LF+  R    +TE++I  TP +VK
Sbjct: 662 QKTVSGVPGLMRIPLLGWLFKTKRIYNPKTELYIFVTPHIVK 703


>gi|304438627|ref|ZP_07398566.1| type II and III secretion system protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304368465|gb|EFM22151.1| type II and III secretion system protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 428

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 24/237 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------- 247
           QV+L+  +  V +   K++G   S +     P  S   D  G +   G +  +       
Sbjct: 188 QVSLEARVVAVSKRAAKELGIDWSWSSLPQYPDVS--RDASGSWHVNGRNAGMDGTSAPG 245

Query: 248 --------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YKT 297
                   +G+   F +   + AL      + LA P +T + G+ A    G +      T
Sbjct: 246 IIRFGRGPEGMPYEFYYTAAIRALVSEGKAKMLARPNVTTVQGREALINIGAEVPVPVVT 305

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK-- 355
            S++   T +   + G++L +TP V + G I  R+ TEVS PV      D+ +YR +K  
Sbjct: 306 TSNNVTTTGIEYREAGIILRYTPRVTADGNIVARVHTEVSTPVF---VDDLKAYRFQKRS 362

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           ADTTV L +G T+V+ GL+  D  +    IP L  +P+LGA FR  R +R ETE+ I
Sbjct: 363 ADTTVRLKNGETMVIGGLIDSDESRTLAKIPFLGDLPLLGAFFRTVRTSRNETELMI 419


>gi|226193920|ref|ZP_03789521.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|225933865|gb|EEH29851.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9]
          Length = 566

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 136/264 (51%), Gaps = 9/264 (3%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G       S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSSTG 303
           ISGQ A+F +GG+ ++  V  S+G
Sbjct: 330 ISGQEATFLAGGK-IFIPVPQSSG 352


>gi|289547821|ref|YP_003472809.1| type II and III secretion system protein [Thermocrinis albus DSM
           14484]
 gi|289181438|gb|ADC88682.1| type II and III secretion system protein [Thermocrinis albus DSM
           14484]
          Length = 575

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 33/251 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------------- 235
           +V+++  I E+R + L+++G   ++  SS+   ++++   G                   
Sbjct: 324 RVSIEARIVEIREEALRELGINWNMLLSSARLPEAWSGGVGSNIGIGSPPTPGNLFLTPP 383

Query: 236 ----GKFVSEGGDFSV---KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
               G   + GG  ++   KG+++  +    + ALER    ++LA+PT+ AI+GQ A+  
Sbjct: 384 YLQPGLSPNPGGILTLTYQKGIINALNLR--ISALERVNLAKSLAKPTIVAINGQKATIK 441

Query: 289 SGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            G Q  Y T +   G T+V      D  + L  TP V   GRI L +   ++   +GV  
Sbjct: 442 QGVQVPYLTAAVGAGGTAVPNIQFKDVVLQLDVTPIVSPDGRILLDLS--LTRDTLGVQT 499

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P+   ++  T V + +G T+V+ G++ +      EGIP   ++P+L  LF   R N+
Sbjct: 500 PQGPAINKKEVRTKVIVENGQTLVIGGVIDNQSYTTNEGIPGFVRVPLLKYLFGQERLNK 559

Query: 406 EETEIFIAATP 416
            +TE+ I  TP
Sbjct: 560 SDTELLIFITP 570


>gi|283787974|ref|YP_003367839.1| fimbrial protein HofQ [Citrobacter rodentium ICC168]
 gi|282951428|emb|CBG91127.1| putative fimbrial protein HofQ [Citrobacter rodentium ICC168]
          Length = 412

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G + ++  + S    G   +  +D      +    F++ G 
Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLAEAQSTGAVGDVSTLGSDLSVAAATTRVGFNI-GR 238

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +D    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 239 IDGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 298

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP VL  GRI L++    + P  V+    G++ +   ++ DT VE+ SG T+
Sbjct: 299 EAVLGMEVTPVVLQKGRIRLKLHISQNMPGQVLQQADGEVLAIDKQEIDTQVEVKSGETL 358

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     ++ +E +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 359 ALGGIFSRKNKRGQESVPLLGDIPWLGQLFRHDGKENERRELVVFITPRLV 409


>gi|156936449|ref|YP_001440365.1| outer membrane porin HofQ [Cronobacter sakazakii ATCC BAA-894]
 gi|156534703|gb|ABU79529.1| hypothetical protein ESA_04350 [Cronobacter sakazakii ATCC BAA-894]
          Length = 390

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 9/232 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-----SFAADFGGKFVSEGGDFSVKG 249
           QV L   I  + +  L+++G + S T  + GP+      + +AD      +    F++ G
Sbjct: 158 QVELAAHIVTINQQSLRELGVKWS-TADADGPTTLYHPTTISADLAVANATTRLGFNI-G 215

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            +D    E  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV  
Sbjct: 216 RIDGRMLEFELSALEQKQKVEIIASPRLLAAHQQPASIKQGSEIPYQVSSGESGATSVEF 275

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGT 367
            +  + +  TPT+   GRI L+++   + P   +   D     + K   +T VE+  G T
Sbjct: 276 KEAVLGMEVTPTIGQDGRIKLKLRISQNMPGQALQQADGEVLAIDKQEIETQVEVKDGET 335

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L G+ +   +   E +P+L  IP+ G+LFR+   + E+ E+ +  TP ++
Sbjct: 336 LALGGIFQQKNKAGNEQVPVLGNIPLFGSLFRHDGKDNEKRELVVFITPRII 387


>gi|217977094|ref|YP_002361241.1| general secretion pathway protein D [Methylocella silvestris BL2]
 gi|217502470|gb|ACK49879.1| general secretion pathway protein D [Methylocella silvestris BL2]
          Length = 805

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 32/279 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAAD--FGGKFVSEGGDFSVKG 249
           QV + +TIAEV  +     G Q  + GSS+   G +  F  +   G      GG  S  G
Sbjct: 523 QVAIDLTIAEVTLNDTLNYGVQFFL-GSSNLGLGANNGFVTNTAAGVPLAQTGGVASAAG 581

Query: 250 VLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS- 300
            L  F+           +++AL + T ++ L+ P+L  +  Q A+   G +   +T S+ 
Sbjct: 582 TLPGFNLTIGNALSPRAIINALHQYTDVKVLSNPSLVVVDNQVATLQVGDEIPIQTGSAT 641

Query: 301 --STGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
             S     V T DY   G++L   P V   G + L ++ E+S        G  P++  RK
Sbjct: 642 VLSANNAVVNTIDYKNTGIILRVQPRVNFNGNVSLDVEQEISNQAGTSALG--PTFSQRK 699

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR--EETEIFIA 413
             +++ + SG T++LAGL+ D +   K GIP+  +IP+LG LF NS  NR    TE+ I 
Sbjct: 700 VKSSILVASGQTVLLAGLISDGVNGTKAGIPVADQIPVLGNLFNNSS-NRLVSRTELII- 757

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
                ++P  +RD    D  +  E+       N+V  IY
Sbjct: 758 ----FIRPQIIRD--GVDASFVAEELRSKLRGNKVGDIY 790


>gi|302392509|ref|YP_003828329.1| type II and III secretion system protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302204586|gb|ADL13264.1| type II and III secretion system protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 428

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 19/245 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAA-DFGGKFVSEGGDFSVKGV 250
           QV ++  I +V  D LK +G   S     G + G   S    + GG  + E GD S    
Sbjct: 182 QVIIEARIEDVSYDKLKDLGINWSFAKNRGDNKGEQISDTDIENGGSGILEIGDVS---- 237

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATS--V 307
               ++  ++ AL+      TLA P +  I G+ A    G +  + K+     G TS  +
Sbjct: 238 ---MNYTAIIRALKSTDDSTTLANPRIATIDGKEAVINMGQEVPILKSEKDDDGQTSTNI 294

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           +  D G VL  TP + +  +I + I+ EVSE  +    G  P    +K +T + + +G T
Sbjct: 295 SFRDVGTVLKITPRI-NNNQIRMNIKPEVSE--VDHWEGSYPVINTKKVETNIIVKNGET 351

Query: 368 IVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           IV+ GL+ + +I QL + +PL   +PI G LF++ R  +E+ E+ I  TP +++     D
Sbjct: 352 IVIGGLISEKEINQLSK-VPLFGDVPIFGELFKSRRTTKEKRELVIFITPRIIEDNGQAD 410

Query: 427 LSRPD 431
               D
Sbjct: 411 EEEKD 415


>gi|238019550|ref|ZP_04599976.1| hypothetical protein VEIDISOL_01419 [Veillonella dispar ATCC 17748]
 gi|237864249|gb|EEP65539.1| hypothetical protein VEIDISOL_01419 [Veillonella dispar ATCC 17748]
          Length = 421

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 123/240 (51%), Gaps = 20/240 (8%)

Query: 182 KKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAADFGG 236
           ++V  L+N   ++  QV L+ TI  + +   K+ GF+ S   +TG     + S+ A   G
Sbjct: 186 RRVETLINAVDKEPKQVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTNSYGAVTFG 245

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           K  + GG+        +F  +  L  +E +     +A+P++ A++G++A    G +    
Sbjct: 246 K--TPGGEAY------KFFVKPELSLMESSGKAVLIAKPSIMALNGETAHILIGERIPVI 297

Query: 297 TVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV- 353
             S   G    +T   + G+ L++TP + + G +  +I  EVS P++     +M +Y++ 
Sbjct: 298 EESEVNGERKRSTRYEEVGIKLNYTPIITADGGVDAKIHAEVSTPIM---VSEMKAYKIS 354

Query: 354 -RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+A T V L  G  +V+ GL+ +  Q   + IP+L  IP+LG LFR+SR  ++  E+ I
Sbjct: 355 TRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDSIEMLI 414


>gi|260599692|ref|YP_003212263.1| outer membrane porin HofQ [Cronobacter turicensis z3032]
 gi|260218869|emb|CBA34224.1| Protein transport protein hofQ [Cronobacter turicensis z3032]
          Length = 390

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 9/232 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----AADFGGKFVSEGGDFSVKG 249
           QV L   I  + +  L+++G + S T  + G +K +     +AD      +    F++ G
Sbjct: 158 QVELAAHIVTINQQSLRELGVKWS-TADAEGATKLYHPTTVSADLAVANATTRLGFNI-G 215

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            +D    E  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV  
Sbjct: 216 RIDGRMLEFELSALEQKQKVEIIASPRLLAAHQQPASIKQGSEIPYQVSSGESGATSVEF 275

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGT 367
            +  + +  TPT+   GRI L+++   + P   +   D     + K +  T VE+  G T
Sbjct: 276 KEAVLGMEVTPTIGQGGRIRLKLRISQNMPGQALQQADGEVLAIDKQEIETQVEVKDGET 335

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L G+ +   +   E +P+L  IP+LG+LFR+   ++E+ E+ +  TP ++
Sbjct: 336 LALGGIFQQKNKTGNEQVPVLGNIPLLGSLFRHDGKDKEKRELVVFITPRII 387


>gi|284047888|ref|YP_003398227.1| type II and III secretion system protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952109|gb|ADB46912.1| type II and III secretion system protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 405

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 115/232 (49%), Gaps = 18/232 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+TL+  I  +     +++G Q   +    G  K     FGG+ +  G  +         
Sbjct: 164 QITLEARILSLGESASRELGLQWDWSALPEG-RKKGEGGFGGR-LHLGHSYGA------- 214

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSSTGATSVTTHD 311
           SF+  L AL +    + LA P +  + G+ AS   G  H+    + V++ST  ++    D
Sbjct: 215 SFQARLSALCQEGKAKVLATPRIITLPGREASIFIG-DHIPVVTEKVTNSTTTSTTEYVD 273

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIV 369
            G+ L +TP +   G I  ++ TEVS P +     ++ +YR+  R ADT V L    T+V
Sbjct: 274 AGIRLSYTPYLSQDGLITAKVHTEVSTPTL---IAELKNYRITSRTADTHVRLREKETLV 330

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + GL+ +  Q   E IPLLSK+P+LG LF+    +R  TE+ +  TP+L  P
Sbjct: 331 IGGLISEQEQHRMEAIPLLSKLPLLGELFKFRSRSRNRTEVCMFLTPYLSGP 382


>gi|42524677|ref|NP_970057.1| flp pilus assembly protein [Bdellovibrio bacteriovorus HD100]
 gi|39576887|emb|CAE78116.1| flp pilus assembly protein [Bdellovibrio bacteriovorus HD100]
          Length = 433

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 22/225 (9%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + +++T+AE+++D   + G +               A +  K + +G       V +R  
Sbjct: 212 IKVQITVAEIKKDFSLKYGLRP-------------PAGYSAKLMPDG-------VWERDE 251

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
               L ALE     + LA P +   SG+ A F +GG+   K ++       +    YG++
Sbjct: 252 LPFNLTALEAQGQGKILASPNILCRSGKEAEFLAGGEFPIKIMNYKM--QDIVWKRYGIL 309

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L   P   + GR+ + I+TEVS         D+P     +  +  +L    TI L+GLLK
Sbjct: 310 LRVKPKADAAGRMSISIETEVSTVDDSRKVDDVPGILTNRVSSHFDLTRPQTIALSGLLK 369

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  +  EG+PLLS++P++GALF +  F    +E+ I   P +++
Sbjct: 370 SEDGKSSEGLPLLSRLPVVGALFASKDFKENRSELVIFVRPSILR 414


>gi|313892802|ref|ZP_07826383.1| bacterial type II and III secretion system protein [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442733|gb|EFR61144.1| bacterial type II and III secretion system protein [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 429

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 20/244 (8%)

Query: 178 NSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA 232
           N   ++V NL+    ++  QV L+ TI  + +   K+ GF+ S   +TG     + S+ A
Sbjct: 190 NGEKRRVENLVRAIDKEPKQVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGDDKTNSYGA 249

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
              GK  S        G   +F  +  L  +E +     +A+P++ A++G++A    G +
Sbjct: 250 VTFGKTPS--------GEAYKFFVKPELSLMESSGKAVLIAKPSIMALNGETAHILIGER 301

Query: 293 HLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
                 S   G    +T   + G+ L++TP + + G +  +I  EVS P++     +M +
Sbjct: 302 IPVVEESEVNGERKRSTRYEEVGIKLNYTPIITADGGVDAKIHAEVSTPIM---VSEMKA 358

Query: 351 YRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           Y++  R+A T V L  G  +V+ GL+ +  Q   + +P+L  IP+LG LFR+SR  ++  
Sbjct: 359 YKISTRQAHTRVRLQQGEVLVIGGLMDNRDQHQIQKVPILGDIPLLGKLFRHSRKTKDSI 418

Query: 409 EIFI 412
           E+ +
Sbjct: 419 EMLV 422


>gi|313672368|ref|YP_004050479.1| type ii and iii secretion system protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939124|gb|ADR18316.1| type II and III secretion system protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 425

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 117/250 (46%), Gaps = 24/250 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGKFV 239
           Q+ ++  I    ++  K +G Q  +                G+ + P++++  +     V
Sbjct: 172 QIMIEAKIVRTTKNAGKDLGIQWGVNVNDRTSKNFPYSVQVGAGADPNRNYIVNLPISDV 231

Query: 240 SEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           +  G  +  GV      + F     L+ALE     + +  P +  ++ Q A   SG +  
Sbjct: 232 ARAGIGAGVGVTLGNFNNTFVLNAKLNALETKGEAKVVHSPKILTMNNQKAKLESGEEIR 291

Query: 295 YKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           ++   +ST  T     +   +   VL  TP +L+ G I L +  E+SE     +  ++P+
Sbjct: 292 FRETKTSTTTTTQEIEIQKDEAKTVLDITPQILNDGNILLNLAVELSEFDWTKSVDNIPA 351

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
               KA+T V L  G T+++ GL K+++ + +  +PLLSKIP+LGALFRN     E  E+
Sbjct: 352 KNKNKAETQVILKDGETLIIGGLKKENVFKNEAAVPLLSKIPLLGALFRNKSSGEELNEL 411

Query: 411 FIAATPFLVK 420
            I  TP +++
Sbjct: 412 LIFVTPKIMR 421


>gi|255658549|ref|ZP_05403958.1| putative type IV pili biogenesis protein PilQ [Mitsuokella
           multacida DSM 20544]
 gi|260849353|gb|EEX69360.1| putative type IV pili biogenesis protein PilQ [Mitsuokella
           multacida DSM 20544]
          Length = 430

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 7/176 (3%)

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGAT 305
           +GV   F +   + AL      + LA P +T + G+ A    GG+    T  V+++T  T
Sbjct: 252 EGVPFEFYYSATIQALVTQGKAKMLARPNITTVQGREALINIGGEVPVPTQSVTNNTTTT 311

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELP 363
           + T    G++L  TP +   GRI   + TEVS P+      D+ +YR   R ADTTV L 
Sbjct: 312 TYTYRQAGIILRCTPRIHEDGRITATVHTEVSSPLY---VEDIKAYRFQNRSADTTVSLR 368

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G T+V+ GL+  D  +    IP L  +PILG+ FR+ R +R E+EI I  T  ++
Sbjct: 369 DGETMVIGGLIGSDESRTLSKIPFLGDLPILGSFFRSVRQSRSESEIMIFLTAHVI 424


>gi|254469140|ref|ZP_05082545.1| general (type II) secretion pathway (GSP) D protein, putative
           [Pseudovibrio sp. JE062]
 gi|211960975|gb|EEA96170.1| general (type II) secretion pathway (GSP) D protein, putative
           [Pseudovibrio sp. JE062]
          Length = 749

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 23/241 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV---- 250
           QV ++ TIAEV  +     G Q  +         +FA   G   V++G     K      
Sbjct: 498 QVVIEATIAEVNINDNLSYGVQWYLA------KGNFAGGIGA--VADGASRPTKAAGGAL 549

Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATS 306
            L+    + VL AL+  T ++ ++ P LT + G+ A    G Q  + + S S+   G  +
Sbjct: 550 SLNTVGVDVVLKALQNITKVKVISSPYLTVLDGRKARLVIGDQVPFASRSQSSSNDGNVT 609

Query: 307 VTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDM-PSYRVRKADTTV 360
           VT      D G+VL   P + S   + L+IQ EVS  V      G + P+   R  ++ +
Sbjct: 610 VTNEVDVKDTGIVLQVEPNIRSNNSVLLQIQQEVSNVVQNKTEEGSLTPTIATRTINSDI 669

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFIAATPFLV 419
            + SG TI+L GL+++  +  + G+P+L KIP+ G LF+ N+  +   TE+ +  TP +V
Sbjct: 670 VVESGRTILLGGLIQERKENGESGVPILRKIPVFGELFKENTTNDTRRTELLVMITPRVV 729

Query: 420 K 420
           +
Sbjct: 730 R 730


>gi|113867004|ref|YP_725493.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16]
 gi|113525780|emb|CAJ92125.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16]
          Length = 478

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 176/393 (44%), Gaps = 47/393 (11%)

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           +V  L+VP  ++ V + +       V   R + L  + +G  ++I+    G  +     +
Sbjct: 51  EVRALEVPGTIRRVAIGNGALVSSTVVDGR-LLLLAEEIGTTSLIVWNERGVALQGKLRV 109

Query: 116 IERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
              D A +   LR  +     +++E+V  +VVL G+V    D Q  V L +T        
Sbjct: 110 APADTADVAQRLRASLGSVRGLKIEVVGPSVVLSGIV----DPQ-MVPLIKT-------- 156

Query: 175 QYANSSSKKVMNLLNI----AGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSK 228
             A S    V+NL+      A +  V  KV I E+ R  ++++G  +Q S     +GP  
Sbjct: 157 --ATSGLDSVVNLVRADEGDALKKTVHFKVHIMEITRRGMEKLGIAWQQSF----NGPQI 210

Query: 229 SFAAD--FGGKF----VSEGGDFS-----VKGVLDRFS-------FETVLHALERATAIR 270
           +FA +    G++     ++   F+     V G    F        F  +  A+    A  
Sbjct: 211 AFAGNPVHTGRYRTLPSTDAATFTDTPSQVAGAASGFYLGIATTIFSRINLAISDGDAY- 269

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LA P L + SG  A+F +GG+      + + G T V    YG+ L+  P V     I  
Sbjct: 270 VLAAPELNSKSGGLATFLAGGEVPIPK-AGAFGTTDVDYKPYGIKLNIRPAVNVDNVIST 328

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++TE+S+    V+ G  P++  R+  +   + +G T+ ++GL+  D  +  + +PLL  
Sbjct: 329 TLETEISQIDPSVSFGGFPAFLTRRTTSETSIRAGETLAISGLVNADASKAVDKVPLLGS 388

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           IPILG LFR+  F   ++++ I  TP +  P +
Sbjct: 389 IPILGRLFRSDEFRNNKSDLVIFVTPVVYDPAS 421


>gi|256823530|ref|YP_003147493.1| general secretion pathway protein D [Kangiella koreensis DSM 16069]
 gi|256797069|gb|ACV27725.1| general secretion pathway protein D [Kangiella koreensis DSM 16069]
          Length = 708

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 10/184 (5%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----- 306
           D FS+   + ALE  T   TL+ P++T +    A F SG Q +     S+ G  +     
Sbjct: 471 DGFSWGAFIRALEGVTDSNTLSRPSVTTLDNVEAIFKSG-QEIPIITGSTLGDNNSNPFQ 529

Query: 307 -VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
            V   D GV+L  TP +     + L I+ EVS  + G    D+ + + R+  T+V +P G
Sbjct: 530 NVERKDVGVMLKLTPQINEGNYVRLDIEQEVSS-IAGSTNVDVVTNK-REVKTSVLVPDG 587

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-M 424
           G +VL GL+ DDIQQ  + +P+L  IP+LG  F++ R  + +  + I   P ++K  A +
Sbjct: 588 GMVVLGGLIDDDIQQSSQKVPILGDIPVLGHAFKSQRTQKIKRNLMIFIHPTVLKDDAEL 647

Query: 425 RDLS 428
           R+LS
Sbjct: 648 RELS 651


>gi|87311027|ref|ZP_01093152.1| RhcC2 [Blastopirellula marina DSM 3645]
 gi|87286317|gb|EAQ78226.1| RhcC2 [Blastopirellula marina DSM 3645]
          Length = 300

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 5/133 (3%)

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
           + D  + + V+  LE++ A++ LAEPTL  +SGQ ASF  GG+   + V S+ G+ ++  
Sbjct: 116 IADDEALKQVVAKLEKSGALKVLAEPTLMTVSGQPASFHVGGEFPIQ-VPSADGSPAIEF 174

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM--PSYRVRKADTTVELPSG 365
             YG  +H  P VL  GRI L ++  +SE  P  G+  GD+  P+ RVR  DT+VE+  G
Sbjct: 175 KAYGAEMHVVPVVLGQGRIRLGLRPRISELDPDHGIKLGDLTVPALRVRGVDTSVEMHVG 234

Query: 366 GTIVLAGLLKDDI 378
              VLAGL++  +
Sbjct: 235 DAFVLAGLVQQRV 247


>gi|148254077|ref|YP_001238662.1| putative general secretion pathway protein D [Bradyrhizobium sp.
           BTAi1]
 gi|146406250|gb|ABQ34756.1| Putative general secretion pathway protein D [Bradyrhizobium sp.
           BTAi1]
          Length = 780

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 13/186 (6%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDY--- 312
           +L AL   T ++ L+ P+L  I  Q+A+   G Q    T S++   T  T V T DY   
Sbjct: 578 ILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQVPVSTGSATVLTTNNTVVNTIDYRNT 637

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G++L   P V   G + L I+ E+S           P+   RK  + V + SG T++LAG
Sbjct: 638 GIILRVAPRVNENGNVRLEIEQEISNVSPQTANSLTPTVAQRKVKSAVAVASGQTVLLAG 697

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L+ +  Q  + G+P + +IP+LG LF N+   R  TE+ I      ++P  +RD +  D 
Sbjct: 698 LISETHQGTRNGVPGVDQIPVLGDLFSNNDRTRGRTELII-----FIRPQIIRDGT--DA 750

Query: 433 HYSVED 438
           HY  E+
Sbjct: 751 HYVAEE 756


>gi|309389127|gb|ADO77007.1| type II and III secretion system protein [Halanaerobium praevalens
           DSM 2228]
          Length = 629

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 108/235 (45%), Gaps = 18/235 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++  + E+  D  +++G  H+  G  +   +S     G  +  E  D+S        
Sbjct: 315 QVVIETRVEEISSDFSRELGIDHTDGGIFNIIKESTNNADGESYKIEKLDYS-------- 366

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-- 312
            +  V  AL+ +T  +TLA P L  ++G+ A+ +   +  YK V++ +     T+ +Y  
Sbjct: 367 -WPDVFKALDTSTDTKTLASPKLMTLNGEEANLSILEEKPYKVVNTDSNGEKTTSWEYAE 425

Query: 313 -GVVLHFTPTVLSPGRIGLRIQ------TEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
            GV L FTP +     I L I       +E+++   G      P+ + R  +TT+ L   
Sbjct: 426 AGVELTFTPWISKNNEIELEIAPTVSSFSEIADSQTGEGESPPPAKKSRSVETTLRLKDN 485

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T  + GL++ D +     IPLL  +P+ G LF+    +    E+ I  TP ++K
Sbjct: 486 ETFAVGGLIQTDKEGKITKIPLLGDLPLFGELFKFREPSDSTNELIIFVTPHIIK 540


>gi|251772573|gb|EES53138.1| putative general secretion pathway protein D [Leptospirillum
           ferrodiazotrophum]
          Length = 565

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 11/191 (5%)

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           V  GG F   GV +  +   +L+ALE  + +RTL+ P + A  G  A  T G    + T 
Sbjct: 320 VLTGGTFKYNGV-NYPNIGELLNALETYSDVRTLSTPEILATDGVKAKITIGEDVPFITG 378

Query: 299 SSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMP 349
            S T   +V T     + G+ L  TP +LS  R+ L ++  +S       VIG  A   P
Sbjct: 379 QSQTVGGNVMTMIQRQNVGITLELTPHILSHNRVRLDVKQTISALTNASQVIGTIAVG-P 437

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   R A T + + SG T+V+ GL+  +     +GIP LS IPILG LF N+   ++  +
Sbjct: 438 TTTKRSAKTNLTISSGQTVVIGGLISKETSINDQGIPFLSDIPILGYLFSNTNNEKKRDD 497

Query: 410 IFIAATPFLVK 420
           + I  TP++++
Sbjct: 498 LLIFLTPYVIR 508


>gi|313673420|ref|YP_004051531.1| type ii and iii secretion system protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940176|gb|ADR19368.1| type II and III secretion system protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 786

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
           F+ +  + A+E     +T++ P +T +  Q A   SGG+ +   +  S   T   T D G
Sbjct: 624 FNIDMAISAMESRNKAKTISSPKITTLDNQEAEIKSGGKAI---IVPSGDNTQSQTIDVG 680

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L   P + +   I + I+ E S   +G  +G       +KA T V L +G T V+ G+
Sbjct: 681 IKLKVKPHITANNMIFMEIEVEKSS--LGAVSGTNAETLEKKAKTQVLLANGETTVIGGI 738

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            +D+  ++K  +P LSKIP+LG LFRN+   R + E+ +  TP
Sbjct: 739 YEDEQNEIKNEVPGLSKIPLLGWLFRNNIERRAKKELLVFITP 781


>gi|288818949|ref|YP_003433297.1| putative type IV pilus biogenesis protein [Hydrogenobacter
           thermophilus TK-6]
 gi|288788349|dbj|BAI70096.1| putative type IV pilus biogenesis protein [Hydrogenobacter
           thermophilus TK-6]
 gi|308752535|gb|ADO46018.1| type II and III secretion system protein [Hydrogenobacter
           thermophilus TK-6]
          Length = 592

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 116/264 (43%), Gaps = 42/264 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKSFAADFGGKFV--- 239
           QV ++  I EVR   L+++G   ++             G+  G +   A   G  FV   
Sbjct: 332 QVKIEARIVEVREQALRELGINWNVLLSQARVPQFWQGGAGQGANIGVAPAPGTIFVPPD 391

Query: 240 ------------------SEGGDFSV---KGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                             + GG F+    KG+L+  +    L ALER   I+ +A+PT+ 
Sbjct: 392 PTSVGPRSPIYYTPGLSQTPGGIFAFSYQKGMLNALNLR--LSALERIAMIKNIAKPTVV 449

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF--TPTVLSPGRIGLRIQTEV 336
            ++ Q A+   G Q  Y+T   + GA +       VVL    TP V   GRI L I  + 
Sbjct: 450 TVNAQKATIKQGVQIPYQTTVVAGGAQAANIQFKDVVLQLDVTPVVSPDGRILLDINLKR 509

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
             P  G      P+   ++A T V +  G T+V+ G++ +   +  EG+P L ++P+L  
Sbjct: 510 DTP--GEQTPQGPAINTKEASTKVVVNDGDTLVIGGIIDNQETKTNEGLPGLVRVPVLKW 567

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           LF      + ++E+ I  TP LV+
Sbjct: 568 LFGQESSQKIQSELLIFLTPVLVR 591


>gi|326318805|ref|YP_004236477.1| general secretion pathway protein D [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375641|gb|ADX47910.1| general secretion pathway protein D [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 823

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 124/252 (49%), Gaps = 32/252 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--GGDFSVKGVLD 252
           QV ++ +I EV  D   Q G Q +   S+SGPS    A   G+ ++   G + S+   + 
Sbjct: 532 QVLIEASIVEVTLDDSLQYGLQWAF--SNSGPSNLNGA---GQLLTNAPGSNSSIGASIP 586

Query: 253 R-----FSF---------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297
                 FS+           VL+AL     ++ ++ P+L  +   +A  + G Q   KT 
Sbjct: 587 TPTTSGFSYALSNSLGNVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTG 646

Query: 298 --VSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--- 348
              S+ +G TSV       D GV L  TP+V +   + ++I   V++  +  N+G++   
Sbjct: 647 TLTSAISGGTSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTD-AVADNSGNVSLQ 705

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P ++ R+  + V + SG  IVL GL++D     K GIPLL  IP++G+LF N+      T
Sbjct: 706 PVFQQRQITSKVAVRSGEAIVLGGLIRDTNNSSKSGIPLLQDIPVVGSLFSNNGKTGTRT 765

Query: 409 EIFIAATPFLVK 420
           E+ +  TP +V+
Sbjct: 766 ELLVVITPKVVR 777


>gi|205360346|ref|ZP_02682767.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205350396|gb|EDZ37027.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 389

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++   S        G   +   D SV     R 
Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 209

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386


>gi|207858728|ref|YP_002245379.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206710531|emb|CAR34889.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 412

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++   S        G   +   D SV     R 
Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409


>gi|205356871|ref|ZP_02343070.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205325673|gb|EDZ13512.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 389

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++   S        G   +   D SV     R 
Sbjct: 157 QVELVAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 209

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEEERRELVVFITPRLV 386


>gi|261341890|ref|ZP_05969748.1| type IV pili biogenesis protein PilQ [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315792|gb|EFC54730.1| type IV pili biogenesis protein PilQ [Enterobacter cancerogenus
           ATCC 35316]
          Length = 403

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 7/232 (3%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKG 249
           DQV L   I  +    L+++G + ++  +S     G   +  AD      +    F++ G
Sbjct: 170 DQVELAAHIVTINEKSLRELGVKWNLAEASEAGRVGEVTALGADLSVANATTHVGFNI-G 228

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            +D    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV  
Sbjct: 229 RIDGRLLDLELSALEQKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEF 288

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367
            +  + +  TP VL  GR+ L++    + P  V+    G+  +   ++ +T VE+ SG T
Sbjct: 289 KEAVLGMEVTPVVLPGGRVRLKLHISENMPGQVLQQADGETLAIDKQEIETQVEVKSGET 348

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L G+     +   + +P L +IP LG LFR+   + E  E+ +  TP LV
Sbjct: 349 LALGGIFSQKNKTGSDSVPGLGRIPWLGQLFRHDGKDNERRELVVFITPRLV 400


>gi|200387767|ref|ZP_03214379.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604865|gb|EDZ03410.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 389

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++   S        G   +   D SV     R 
Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 209

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386


>gi|294791632|ref|ZP_06756780.1| putative type II and III secretion system protein [Veillonella sp.
           6_1_27]
 gi|294456862|gb|EFG25224.1| putative type II and III secretion system protein [Veillonella sp.
           6_1_27]
          Length = 432

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 20/226 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGV 250
           QV L+ TI  + +   K+ GF+ S   +TG     + S+ A  FG     E   F VK  
Sbjct: 212 QVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPE 271

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT- 309
           L           +E +     +A+P++ A++G++A    G +      S   G    +T 
Sbjct: 272 LS---------LMESSGKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTR 322

Query: 310 -HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGG 366
             + G+ L++TP + + G +  +I  EVS P++     +M +Y++  R+A T V L  G 
Sbjct: 323 YEEVGIKLNYTPIITADGGVDAKIHAEVSTPIM---VSEMKAYKISTRQAHTRVRLQPGE 379

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +V+ GL+ +  Q   + IP+L  IP+LG LFR+SR  ++  E+ +
Sbjct: 380 VLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDSIEMLM 425


>gi|269797724|ref|YP_003311624.1| type II and III secretion system protein [Veillonella parvula DSM
           2008]
 gi|269094353|gb|ACZ24344.1| type II and III secretion system protein [Veillonella parvula DSM
           2008]
          Length = 432

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 20/226 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGV 250
           QV L+ TI  + +   K+ GF+ S   +TG     + S+ A  FG     E   F VK  
Sbjct: 212 QVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPE 271

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT- 309
           L           +E +     +A+P++ A++G++A    G +      S   G    +T 
Sbjct: 272 LS---------LMESSGKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTR 322

Query: 310 -HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGG 366
             + G+ L++TP + + G +  +I  EVS P++     +M +Y++  R+A T V L  G 
Sbjct: 323 YEEVGIKLNYTPIITADGGVDAKIHAEVSTPIM---VSEMKAYKISTRQAHTRVRLQPGE 379

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +V+ GL+ +  Q   + IP+L  IP+LG LFR+SR  ++  E+ +
Sbjct: 380 VLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDSIEMLM 425


>gi|62181990|ref|YP_218407.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129623|gb|AAX67326.1| putative transport protein, possibly in biosynthesis of type IV
           pilin [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322716478|gb|EFZ08049.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 412

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVATLSSDLSVAAATSRV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409


>gi|16766776|ref|NP_462391.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16422046|gb|AAL22350.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|261248643|emb|CBG26481.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995705|gb|ACY90590.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160031|emb|CBW19550.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914512|dbj|BAJ38486.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|323131847|gb|ADX19277.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332990340|gb|AEF09323.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 412

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++   S        G   +   D SV     R 
Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409


>gi|224585282|ref|YP_002639081.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469810|gb|ACN47640.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 379

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 147 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVATLSSDLSVAAATSRV 199

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 200 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 259

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 260 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 319

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 320 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 376


>gi|108809091|ref|YP_653007.1| putative outer membrane secretin family protein [Yersinia pestis
           Antiqua]
 gi|108781004|gb|ABG15062.1| putative outer membrane secretin family protein [Yersinia pestis
           Antiqua]
          Length = 149

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 6/126 (4%)

Query: 327 RIGLRIQTEVS--EPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           RI + +  EVS  + V  +  GD  PS R+RKA+TTVEL  G + +L GL+    Q+  +
Sbjct: 6   RIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTEQESLK 65

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            IP +  IP+LGALFRN++  R ++E+ + AT  LVKPV+ R +  PD  ++   +    
Sbjct: 66  KIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTVER--- 122

Query: 444 FFNRVN 449
           FFN  N
Sbjct: 123 FFNLTN 128


>gi|238913611|ref|ZP_04657448.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 412

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409


>gi|289824820|ref|ZP_06544263.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 389

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 209

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386


>gi|204928849|ref|ZP_03220048.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322282|gb|EDZ07480.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 389

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++   S        G   +   D SV     R 
Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 209

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  ++    G++ +   ++ +T VE+
Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQILQQADGEVLAIDKQEIETQVEV 329

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386


>gi|330819176|ref|YP_004348038.1| type II and III secretion system protein [Burkholderia gladioli
           BSR3]
 gi|327371171|gb|AEA62526.1| type II and III secretion system protein [Burkholderia gladioli
           BSR3]
          Length = 564

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 17/252 (6%)

Query: 179 SSSKKVMNLLNIAGEDQ-------VTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKS 229
           +++  V NL+N    D+       +  KV I E+ R+  + +G  +   I G  +G    
Sbjct: 162 AATAGVPNLVNAIAVDEGDALKKTIHFKVRIMELTRNAQENLGIEWDRKIAGPQAG---- 217

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            A  + G     G    + G+    +  T+   + R  A   LA P L   SG +ASF +
Sbjct: 218 -AQGYIGSQAVAGPGMVIAGISTHIA-STLNLMITRGDAY-VLAAPELNTKSGGTASFLA 274

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
           GGQ +    + + G T V   DYG+ L   P V +   I  +I TE+S+    V+ G  P
Sbjct: 275 GGQ-VPIPRAGALGTTDVEYKDYGIKLDIKPVVDANNVISAQIDTEISQIDPSVSYGGYP 333

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
            +  R A + + L +G T+ ++GL+  D       +P L ++PI+G LFR+  F  + ++
Sbjct: 334 GFLTRSARSDISLRAGETMAISGLVNADAIGNMSRLPFLGRLPIIGRLFRSDEFRSKRSD 393

Query: 410 IFIAATPFLVKP 421
           + I  TP +  P
Sbjct: 394 LVIFVTPMISDP 405


>gi|322614138|gb|EFY11074.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618029|gb|EFY14922.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625356|gb|EFY22182.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322632290|gb|EFY29041.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636359|gb|EFY33066.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643215|gb|EFY39784.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644783|gb|EFY41319.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651192|gb|EFY47576.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654940|gb|EFY51255.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322663102|gb|EFY59306.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668588|gb|EFY64741.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674608|gb|EFY70701.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678186|gb|EFY74247.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682557|gb|EFY78578.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684270|gb|EFY80276.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192175|gb|EFZ77407.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196399|gb|EFZ81551.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201800|gb|EFZ86863.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206342|gb|EFZ91303.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211936|gb|EFZ96763.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216841|gb|EGA01564.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222240|gb|EGA06623.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323228183|gb|EGA12314.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233550|gb|EGA17643.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323236988|gb|EGA21055.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243797|gb|EGA27813.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323255748|gb|EGA39498.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323267633|gb|EGA51115.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268514|gb|EGA51981.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 389

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 209

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386


>gi|320087902|emb|CBY97664.1| Protein transport protein hofQ Flags: Precursor [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 412

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409


>gi|205354888|ref|YP_002228689.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205274669|emb|CAR39723.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326630034|gb|EGE36377.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 412

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++   S        G   +   D SV     R 
Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGGIPWLGQLFRHDGKEDERRELVVFITPRLV 409


>gi|322629821|gb|EFY26594.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322659197|gb|EFY55449.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|323227365|gb|EGA11531.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323245960|gb|EGA29947.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250737|gb|EGA34615.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323261394|gb|EGA44980.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
          Length = 412

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409


>gi|195873801|ref|ZP_02699139.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197248588|ref|YP_002148409.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|195632392|gb|EDX50876.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197212291|gb|ACH49688.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 389

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 209

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386


>gi|321226537|gb|EFX51587.1| Type IV pilus biogenesis protein PilQ [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
          Length = 389

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++   S        G   +   D SV     R 
Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 209

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 210 GFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386


>gi|205357592|ref|ZP_03223780.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205330642|gb|EDZ17406.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
          Length = 426

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++   S        G   +   D SV     R 
Sbjct: 194 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 246

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 247 GFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 306

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 307 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 366

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 367 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 423


>gi|16762799|ref|NP_458416.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144286|ref|NP_807628.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213053391|ref|ZP_03346269.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213416770|ref|ZP_03349914.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213426742|ref|ZP_03359492.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213646579|ref|ZP_03376632.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213852697|ref|ZP_03382229.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|25324276|pir||AB1000 type II secretion system protein [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505105|emb|CAD08126.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139923|gb|AAO71488.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 412

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409


>gi|56415404|ref|YP_152479.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364334|ref|YP_002143971.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129661|gb|AAV79167.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095811|emb|CAR61383.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 412

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409


>gi|205359546|ref|ZP_03224342.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205344340|gb|EDZ31104.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
          Length = 429

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 197 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 249

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 250 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 309

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 310 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 369

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 370 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 426


>gi|194470789|ref|ZP_03076773.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205358599|ref|ZP_02657680.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194457153|gb|EDX45992.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205333155|gb|EDZ19919.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 426

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 194 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 246

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 247 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 306

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 307 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 366

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 367 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 423


>gi|161616525|ref|YP_001590490.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161365889|gb|ABX69657.1| hypothetical protein SPAB_04341 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 389

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 209

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 210 GFNIGRISGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386


>gi|194446460|ref|YP_002042738.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194405123|gb|ACF65345.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 426

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 194 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 246

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 247 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 306

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 307 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 366

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 367 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 423


>gi|194451757|ref|YP_002047512.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205359079|ref|ZP_03224213.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194410061|gb|ACF70280.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338987|gb|EDZ25751.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 426

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 194 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 246

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 247 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 306

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 307 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 366

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 367 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 423


>gi|163801327|ref|ZP_02195226.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
 gi|159174816|gb|EDP59616.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
          Length = 416

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 150/370 (40%), Gaps = 46/370 (12%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I++ +N+   L +    +D++V      DV +     +YL     G+  VI+ G +    
Sbjct: 37  INMSVNETKHLPLSYVPKDIVVGSDKVVDVNLADSNNLYLIAHEAGKTKVIVKGEEETTE 96

Query: 110 LNLDILIERDIAHLEMTLRRFIAD---SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
             + +   RD       L +F+     +++    V++ + ++G V+   D     EL++ 
Sbjct: 97  YVIQV---RDTDKDTHNLNKFLESAGYTDVEAVKVAEKIYINGAVK---DKVEKRELNKL 150

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
             +   R    N++         I    QV + +T+AEV + I  ++G         +G 
Sbjct: 151 VRNAISRYYVDNTT---------ITENRQVRINLTMAEVSKSIDDELGITWG-----AGW 196

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           SK                  + GV  + S    +  L R      L  P++   +G +A+
Sbjct: 197 SK------------------IDGVTSK-SLSATIGLLSRNNLATVLTRPSIIVTNGSTAT 237

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
           F +GG+     ++       V   DYG+ L F P +     I LR     S+    I + 
Sbjct: 238 FEAGGE--VPVLTYDDENVDVEFKDYGIKLEFKPNIKRDQSIDLRANVSSSQIADFIKLG 295

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
             D P    R  +T + +  G   VLAGL+ +   Q    +P L  +PI+G+LF +  F 
Sbjct: 296 GNDTPQLNTRSVNTELNVNDGDIFVLAGLIDNSQTQAVSKVPFLGYLPIIGSLFTSENFK 355

Query: 405 REETEIFIAA 414
             +TE+ I A
Sbjct: 356 SNKTELMIFA 365


>gi|161505946|ref|YP_001573058.1| outer membrane porin HofQ [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867293|gb|ABX23916.1| hypothetical protein SARI_04127 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 400

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 106/237 (44%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G       D SV     R 
Sbjct: 168 QVELAAHIVTINEKSLRELGVKWTLADAQQ-------AGAVGDVTMLSSDLSVAAATSRV 220

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 221 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 280

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 281 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 340

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 341 KSGETLALGGIFSRKNKSGRDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 397


>gi|289806224|ref|ZP_06536853.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 295

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 63  QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 115

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 116 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 175

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 176 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 235

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 236 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 292


>gi|303251572|ref|ZP_07337746.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252115|ref|ZP_07534014.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302649570|gb|EFL79752.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860415|gb|EFM92429.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 221

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 9/173 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +   ++ AL+     + LAEP ++ +SG++A    GG+  +       G  SV   ++G+
Sbjct: 8   NLNVLISALDNQNNGKILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGI 66

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVL 370
            L     V    RI L +   VS  + G    VN+  +P +  R++ +T E+ +G + ++
Sbjct: 67  KLAVGAKVQKSDRIRLVLSQSVS-TIAGNYEIVNS-RIPIFNTRRSKSTFEVGNGESFII 124

Query: 371 AGLL-KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           +GLL K DI+ +K+ +P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV
Sbjct: 125 SGLLNKQDIEGIKK-VPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPV 176


>gi|187251612|ref|YP_001876094.1| rcpA subunit [Elusimicrobium minutum Pei191]
 gi|186971772|gb|ACC98757.1| RcpA subunit [Elusimicrobium minutum Pei191]
          Length = 248

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 17/187 (9%)

Query: 244 DFSVK---GVLDRFSFE------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           DF+ K   GVL+  SFE      T L  +E     + L+ P +   +G +A+ + GGQ  
Sbjct: 59  DFAEKEIPGVLEIGSFERKTALTTRLRLMENEGKAQILSNPKIVTRTGTNANISVGGQIP 118

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL--SPGRIGLRIQTEVSEP----VIGVNAGDM 348
           +  V++    TS+   DYGV+L+  PT++      I L++  EVS P     + V +  +
Sbjct: 119 FPEVNNQGVGTSML--DYGVILNVMPTIIPEQSNLINLQVNLEVSAPDYSRTVSVGSTTV 176

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS   R+ +T VEL SG T+V+ GL         + IPLL ++P++G LFRN     E+ 
Sbjct: 177 PSINKRRVETQVELHSGETLVIGGLKSSSRNVSVDRIPLLGRLPLIGLLFRNKDTLDEQR 236

Query: 409 EIFIAAT 415
            +F+  T
Sbjct: 237 SLFLFVT 243


>gi|194431292|ref|ZP_03063585.1| protein transporter HofQ [Shigella dysenteriae 1012]
 gi|194420747|gb|EDX36823.1| protein transporter HofQ [Shigella dysenteriae 1012]
          Length = 412

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+VL G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLVLGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|260886221|ref|ZP_05897484.1| putative secretin and TonB short domain protein [Selenomonas
           sputigena ATCC 35185]
 gi|260863940|gb|EEX78440.1| putative secretin and TonB short domain protein [Selenomonas
           sputigena ATCC 35185]
          Length = 462

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 27/268 (10%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGPSKSFAADF 234
            + ++ V++ L++  E QV+L+  +  + ++  K++G     +       G SKS     
Sbjct: 191 KARAEAVLHSLDVPTE-QVSLEARVVALEKNAAKELGVDWDWSPLPIDPHGTSKS----- 244

Query: 235 GGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G +    G D  V GV+            F +   + AL        LA P +T + G+ 
Sbjct: 245 GAEGSRRGIDGEVPGVIRFGRTPEGKPYEFYYRAKIAALITDGKANVLARPNITTLQGRE 304

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A    GG        ++    + +      G++L +TP +   G I  R+ TEVS PV  
Sbjct: 305 AVINIGGSVPVPETQTTNSTVTTSITYKKAGIILRYTPRIHENGEITARVHTEVSSPVY- 363

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           V+A     ++ R ADTTV L  G T+V+ GL+  +  ++   +PLL  IPILG  F++ R
Sbjct: 364 VDALKAYKFQERSADTTVRLKDGETMVIGGLIGSEESRVFAKVPLLGDIPILGTFFKSVR 423

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430
             + ++EI I  T  +     +RD S P
Sbjct: 424 RTKTDSEIMIFLTAHI-----LRDTSPP 446


>gi|330839785|ref|YP_004414365.1| type II and III secretion system protein [Selenomonas sputigena
           ATCC 35185]
 gi|329747549|gb|AEC00906.1| type II and III secretion system protein [Selenomonas sputigena
           ATCC 35185]
          Length = 447

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 27/268 (10%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGPSKSFAADF 234
            + ++ V++ L++  E QV+L+  +  + ++  K++G     +       G SKS     
Sbjct: 176 KARAEAVLHSLDVPTE-QVSLEARVVALEKNAAKELGVDWDWSPLPIDPHGTSKS----- 229

Query: 235 GGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G +    G D  V GV+            F +   + AL        LA P +T + G+ 
Sbjct: 230 GAEGSRRGIDGEVPGVIRFGRTPEGKPYEFYYRAKIAALITDGKANVLARPNITTLQGRE 289

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A    GG        ++    + +      G++L +TP +   G I  R+ TEVS PV  
Sbjct: 290 AVINIGGSVPVPETQTTNSTVTTSITYKKAGIILRYTPRIHENGEITARVHTEVSSPVY- 348

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           V+A     ++ R ADTTV L  G T+V+ GL+  +  ++   +PLL  IPILG  F++ R
Sbjct: 349 VDALKAYKFQERSADTTVRLKDGETMVIGGLIGSEESRVFAKVPLLGDIPILGTFFKSVR 408

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430
             + ++EI I  T  +     +RD S P
Sbjct: 409 RTKTDSEIMIFLTAHI-----LRDTSPP 431


>gi|288572884|ref|ZP_06391241.1| general secretion pathway protein D [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568625|gb|EFC90182.1| general secretion pathway protein D [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 659

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 125/269 (46%), Gaps = 35/269 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGK------FVSEGGDFS 246
           QV ++  IAEV    LK  G   +  G     S  FAA+   GG       FV    D S
Sbjct: 358 QVMVRGLIAEVNLTNLKNAGIDWATWGGQVSGSTVFAANAALGGSTGVPSTFVDWFQDLS 417

Query: 247 VKGVLDRFSFET-------------------VLHALERATAIRTLAEPTLTAISGQSASF 287
            K   +  + ET                    +  L++  A+  L+ P L     + +S 
Sbjct: 418 KKETYEWITPETGEPYREKTTVYEGNSLIYAYVQLLKKYDAMNILSMPRLMCTDNKESSL 477

Query: 288 TSGGQ--HLYKTVSSSTGATSV-TTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
             G     +  + S  +  +SV  ++DY   G+ L  TP + S   + L I+ + +E V+
Sbjct: 478 MVGQTIPQMKASTSDISNPSSVQNSYDYKDTGLKLKITPHIRSGNLVALDIE-QSTEEVL 536

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                  P    R+  T+V++ +G TI+L GLLK+  + LK+ +P+LS IP++G LF++S
Sbjct: 537 SAMTSTTPVTAKREVKTSVQVRNGETIILGGLLKETEKSLKQRVPILSYIPLVGELFKSS 596

Query: 402 RFNREETEIFIAATPFLVK-PVAMRDLSR 429
              RE+ E+ +  TP++++ P A  + S+
Sbjct: 597 TNQREKIELMVFLTPYILETPEAATEASK 625


>gi|149195014|ref|ZP_01872107.1| type II and III secretion system protein:NolW-like protein
           [Caminibacter mediatlanticus TB-2]
 gi|149134935|gb|EDM23418.1| type II and III secretion system protein:NolW-like protein
           [Caminibacter mediatlanticus TB-2]
          Length = 579

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 128/252 (50%), Gaps = 21/252 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---HSITGSSSGPSKSFAADFGGKF 238
           K ++N L+   E QV +K  I E+      QIG +   ++ +G++SG   + +A+ GG  
Sbjct: 301 KTIINALDTPKE-QVYVKARILEISNTKAAQIGNRLGLYAGSGTTSG-LYTLSANLGGPA 358

Query: 239 VS---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           ++        ++  +    +    L  LE   A + L+EP++  I+   ++   G     
Sbjct: 359 IAFDVASLGLTIPTIKQGIALGATLDLLETYGAAKKLSEPSILCINNTPSTIYVG----- 413

Query: 296 KTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           KTVS       S+T + S T  D G+ L   P + S  ++ L +   + + + G +  +M
Sbjct: 414 KTVSVLTGKTTSTTTSESYTRQDIGLTLKVKPRIDSDNKVALNVDAVIEDLLPG-SPVNM 472

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P    R  +TT  + +G +I++ GL++D+       +PLL  IPILGALFR+ + N+++T
Sbjct: 473 PITSKRTINTTTIVRNGQSIIIGGLVRDNKDITLNKVPLLGDIPILGALFRHKQINKDKT 532

Query: 409 EIFIAATPFLVK 420
            + I  TP++VK
Sbjct: 533 TLVIVLTPYIVK 544


>gi|332085619|gb|EGI90783.1| transport protein hofQ [Shigella dysenteriae 155-74]
          Length = 386

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+VL G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLVLGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|238927984|ref|ZP_04659744.1| Fimbrial type IV assembly protein pilQ precursor [Selenomonas
           flueggei ATCC 43531]
 gi|238883944|gb|EEQ47582.1| Fimbrial type IV assembly protein pilQ precursor [Selenomonas
           flueggei ATCC 43531]
          Length = 428

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 120/249 (48%), Gaps = 23/249 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADF--GGK 237
           +++++ L+ A   QV+L+  +  V +   K++G   S +     P  ++  A ++   G+
Sbjct: 176 REIVSALDTAPR-QVSLEARVVAVSKRAAKELGVDWSWSSLPQYPNVTRDSAGNWHVSGR 234

Query: 238 FVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                G  S  GV+            F +   + AL      + LA P +T + G+ A  
Sbjct: 235 NAGTAGR-SAPGVIRFGRGPEGLPYEFYYSAAIRALITEGKAKMLARPNVTTVQGREALI 293

Query: 288 TSGGQHL--YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
             G +      T S++   T +   + G++L +TP V + G I   + TEVS PV     
Sbjct: 294 NIGAEVPVPVVTTSNNVTTTGIEYREAGIILRYTPRVTADGNIVAHVHTEVSTPVF---V 350

Query: 346 GDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            D+ +YR +K  ADTTV L +G T+V+ GL+  D  +    IP L  +P+LGA FR  R 
Sbjct: 351 DDLKAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRTLAKIPFLGDLPLLGAFFRTVRT 410

Query: 404 NREETEIFI 412
           ++ E+E+ I
Sbjct: 411 SKNESELMI 419


>gi|254487874|ref|ZP_05101079.1| general secretion pathway protein D [Roseobacter sp. GAI101]
 gi|214044743|gb|EEB85381.1| general secretion pathway protein D [Roseobacter sp. GAI101]
          Length = 644

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 44/270 (16%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++  I EV  D+ +++G Q  I G ++      A  FG       G  S++ VL   
Sbjct: 357 QVMIEAAIVEVSGDVAERLGVQLGI-GENTETGSIAATSFGN------GGGSLQNVLVAL 409

Query: 255 -------------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                              SF  ++ AL  +T+   L+ P++T +  QSA+   G    +
Sbjct: 410 GQSNAAALSTGLSVGLASDSFGALIQALNTSTSANLLSTPSVTTMDNQSATIVVGQNVPF 469

Query: 296 KTVSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGD 347
           +T   +T   +V       D G+ +   P + + G + L I+ EVS    + V G  A D
Sbjct: 470 RTGRLTTDGGNVAEVIEREDVGITMVVKPRITAGGVVQLEIEQEVSSLTNQAVTG--AAD 527

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + + R R  +TTV   +GGT+VL GL+ DD  Q  + +PLL  +P+LG LF++   +R +
Sbjct: 528 LVTNR-RVINTTVLAENGGTVVLGGLITDDRLQNNQKVPLLGDVPVLGNLFKSRNNSRSK 586

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +F+    FL +P  M  L+R D   + E
Sbjct: 587 RTLFV----FL-RPTIM--LTRADLEKAAE 609


>gi|312972346|ref|ZP_07786520.1| transport protein hofQ [Escherichia coli 1827-70]
 gi|310334723|gb|EFQ00928.1| transport protein hofQ [Escherichia coli 1827-70]
          Length = 386

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGNDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP+ G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|309703802|emb|CBJ03143.1| protein transport protein [Escherichia coli ETEC H10407]
          Length = 412

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP+ G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDERRELVVFNTPRLV 409


>gi|270264426|ref|ZP_06192692.1| putative outer membrane porin HofQ [Serratia odorifera 4Rx13]
 gi|270041562|gb|EFA14660.1| putative outer membrane porin HofQ [Serratia odorifera 4Rx13]
          Length = 414

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 108/242 (44%), Gaps = 27/242 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +  + L+++G +  +           A D G       GDF+V   L+R 
Sbjct: 183 QVQLAAHIVTINSESLRELGVRWGL-----------APDEGAAKPLRMGDFNVSLPLERS 231

Query: 255 SFETVLH--------------ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           +     H              ALE+   +  +A P L     Q+AS   G +  Y+  S 
Sbjct: 232 AVSAGFHLARIGGRLLDLELMALEQENRVEIIASPRLLTAHQQTASIKQGTEIPYEVKSG 291

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--T 358
           S+GATS+   +  + +  TP +L  GRI L +Q   + P   ++  D  +  + K +  T
Sbjct: 292 SSGATSMEFKEAVLGMEVTPKILPNGRITLTLQISQNMPGRSISRADGEALAIDKQEIKT 351

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V +  G TIVL G+ +    Q  + +P L  IP+LG+LF+ S    +  E+ I  TP L
Sbjct: 352 QVTVKDGETIVLGGVFQRQSAQGADKVPGLGDIPLLGSLFKQSTKQHKRRELVIFITPTL 411

Query: 419 VK 420
           +K
Sbjct: 412 IK 413


>gi|282848997|ref|ZP_06258386.1| bacterial type II and III secretion system protein [Veillonella
           parvula ATCC 17745]
 gi|282581272|gb|EFB86666.1| bacterial type II and III secretion system protein [Veillonella
           parvula ATCC 17745]
          Length = 440

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 20/226 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGV 250
           QV L+ TI  + +   K+ GF+ S   +TG     + S+ A  FG     E   F VK  
Sbjct: 220 QVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPE 279

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT- 309
           L           +E +     +A+P++ AI+G++A    G +      S   G    +T 
Sbjct: 280 LS---------LMESSGKAVLIAKPSIMAINGETAHILIGERIPVIEESEVNGERKRSTR 330

Query: 310 -HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGG 366
             + G+ L++TP + +   +  +I  EVS P++     +M +Y++  R+A T V L  G 
Sbjct: 331 YEEVGIKLNYTPIITADDGVDAKIHAEVSTPIM---VSEMKAYKISTRQAHTRVRLQPGE 387

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +V+ GL+ +  Q   + IP+L  IP+LG LFR+SR  ++  E+ +
Sbjct: 388 VLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDSIEMLM 433


>gi|170018373|ref|YP_001723327.1| outer membrane porin HofQ [Escherichia coli ATCC 8739]
 gi|169753301|gb|ACA76000.1| type IV pilus secretin PilQ [Escherichia coli ATCC 8739]
          Length = 386

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP+ G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|145320312|gb|ABP62459.1| type IV pilus secretin PilQ [Enterobacter sp. 638]
          Length = 373

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248
           QV L+  I  +    L+++G + ++       +++  A   G+  + G D SV       
Sbjct: 141 QVQLEAHIVTINEKSLRELGVKWNL-------AEAQGAGAPGQVTTMGADLSVANATTHV 193

Query: 249 ----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
               G +D    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 194 GFNIGRIDGRLLDLELSALEQKQQLEIIASPRLLASHMQPASIKQGSEIPYQVSSGDSGA 253

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TP VL  GR+ L+++   + P  V+    G+  +   ++ +T VE+
Sbjct: 254 TSVEFKEAVLGMEVTPVVLPNGRVRLKLRISENMPGQVLQQADGETLAIDKQEIETQVEV 313

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +P L  +P+LG  FR+   + E  E+ +  TP L+
Sbjct: 314 KSGETLALGGIFSQKNKTASDSVPGLGHVPLLGQFFRHDGKDNERRELVVFITPRLI 370


>gi|213622639|ref|ZP_03375422.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 250

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 18  QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 70

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 71  GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 130

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 131 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 190

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 191 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 247


>gi|317049888|ref|YP_004117536.1| type IV pilus secretin PilQ [Pantoea sp. At-9b]
 gi|316951505|gb|ADU70980.1| type IV pilus secretin PilQ [Pantoea sp. At-9b]
          Length = 418

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 2/167 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+ + I  +A P L     Q+A+   G +  Y+  S ++GAT++   +  + +  T
Sbjct: 249 LSALEQESQIDIIASPRLFTSHQQTATIKQGTEIPYEVKSGNSGATAIEFKEAVLGMEVT 308

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDD 377
           P VL  GRI L+++   + P   +N G+  +  + K   DT V L  G T+ L G+ +  
Sbjct: 309 PVVLGNGRIQLKLRLSQNMPGRSINTGEHQTLSIDKQEIDTQVTLRDGETLALGGIFQQQ 368

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
             Q +  +P L K+P++G LFR+     ++ E+ I  TP LV+  A+
Sbjct: 369 RAQNENRVPWLGKLPVVGNLFRHQTDEHKKKELVIFITPRLVREAAL 415


>gi|157162867|ref|YP_001460185.1| outer membrane porin HofQ [Escherichia coli HS]
 gi|254038556|ref|ZP_04872612.1| transporter HofQ [Escherichia sp. 1_1_43]
 gi|157068547|gb|ABV07802.1| protein transporter HofQ [Escherichia coli HS]
 gi|226839062|gb|EEH71085.1| transporter HofQ [Escherichia sp. 1_1_43]
 gi|323934619|gb|EGB31019.1| type IV pilus secretin PilQ [Escherichia coli E1520]
          Length = 412

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP+ G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|170766950|ref|ZP_02901403.1| protein transporter HofQ [Escherichia albertii TW07627]
 gi|170124388|gb|EDS93319.1| protein transporter HofQ [Escherichia albertii TW07627]
          Length = 386

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G + ++  +    S G   +  +D      +    F++  +
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQHVGSVGQVTTLGSDLSVATATTHIGFNIGRI 213

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R   +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 214 NGRL-LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 272

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+ SG T+
Sbjct: 273 EAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETL 332

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 333 ALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|22127359|ref|NP_670782.1| hypothetical protein y3485 [Yersinia pestis KIM 10]
 gi|108810715|ref|YP_646482.1| outer membrane secretin family protein [Yersinia pestis Nepal516]
 gi|229840586|ref|ZP_04460745.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842864|ref|ZP_04463016.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900910|ref|ZP_04516034.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Nepal516]
 gi|270487710|ref|ZP_06204784.1| conserved hypothetical protein [Yersinia pestis KIM D27]
 gi|294502758|ref|YP_003566820.1| hypothetical protein YPZ3_0648 [Yersinia pestis Z176003]
 gi|21960443|gb|AAM87033.1|AE013951_8 hypothetical [Yersinia pestis KIM 10]
 gi|108774363|gb|ABG16882.1| outer membrane secretin family protein [Yersinia pestis Nepal516]
 gi|229682249|gb|EEO78341.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Nepal516]
 gi|229690131|gb|EEO82188.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696952|gb|EEO86999.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|262360790|gb|ACY57511.1| hypothetical protein YPD4_0602 [Yersinia pestis D106004]
 gi|262364735|gb|ACY61292.1| hypothetical protein YPD8_0602 [Yersinia pestis D182038]
 gi|270336214|gb|EFA46991.1| conserved hypothetical protein [Yersinia pestis KIM D27]
 gi|294353217|gb|ADE63558.1| hypothetical protein YPZ3_0648 [Yersinia pestis Z176003]
 gi|320016745|gb|ADW00317.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 149

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 75/126 (59%), Gaps = 6/126 (4%)

Query: 327 RIGLRIQTEVS--EPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           RI + +  EVS  + V  +  GD  PS R+RKA+TTVEL  G + +L GL+    ++  +
Sbjct: 6   RIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLK 65

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            IP +  IP+LGALFRN++  R ++E+ + AT  LVKPV+ R +  PD  ++   +    
Sbjct: 66  KIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTVER--- 122

Query: 444 FFNRVN 449
           FFN  N
Sbjct: 123 FFNLTN 128


>gi|91212863|ref|YP_542849.1| outer membrane porin HofQ [Escherichia coli UTI89]
 gi|117625659|ref|YP_858982.1| outer membrane porin HofQ [Escherichia coli APEC O1]
 gi|218560448|ref|YP_002393361.1| outer membrane porin HofQ [Escherichia coli S88]
 gi|237703118|ref|ZP_04533599.1| protein transporter HofQ [Escherichia sp. 3_2_53FAA]
 gi|91074437|gb|ABE09318.1| protein transport protein HofQ precursor [Escherichia coli UTI89]
 gi|115514783|gb|ABJ02858.1| putative transport protein HofQ precursor [Escherichia coli APEC
           O1]
 gi|218367217|emb|CAR04991.1| fimbrial transporter [Escherichia coli S88]
 gi|226902382|gb|EEH88641.1| protein transporter HofQ [Escherichia sp. 3_2_53FAA]
 gi|294490021|gb|ADE88777.1| protein transporter HofQ [Escherichia coli IHE3034]
 gi|312947939|gb|ADR28766.1| outer membrane porin HofQ [Escherichia coli O83:H1 str. NRG 857C]
 gi|323950048|gb|EGB45931.1| type IV pilus secretin PilQ [Escherichia coli H252]
 gi|323954672|gb|EGB50454.1| type IV pilus secretin PilQ [Escherichia coli H263]
          Length = 412

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|331659679|ref|ZP_08360617.1| protein transport protein HofQ [Escherichia coli TA206]
 gi|331052894|gb|EGI24927.1| protein transport protein HofQ [Escherichia coli TA206]
          Length = 412

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|171913118|ref|ZP_02928588.1| probable general secretion pathway protein D [Verrucomicrobium
           spinosum DSM 4136]
          Length = 888

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 33/260 (12%)

Query: 220 TGSSSGPSKSF------------AADFGGKFVS----EGGDFSVKGVLDRFSFETVLHAL 263
           TGS+SG S +F             AD     ++        F++ G L + S +  + AL
Sbjct: 602 TGSNSGLSSAFIAGREEIITNNNVADMRDNLITTALANAKGFNIYGQLGQ-SLDVFVSAL 660

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVTT----HDYG 313
           E     + L+ P++ A++ + A  TSG         L    S++ G  +VTT     D  
Sbjct: 661 ETTNNFKVLSRPSVFALNNKRAVITSGQSIPVPESSLANASSNNNGTGNVTTTITYKDVV 720

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + L   P +   G + LR+  +V++ V+G   V   ++P     +  TTV +P+G T+VL
Sbjct: 721 LKLEVIPLINPDGDVTLRV-AQVNDTVVGNQIVAQNNVPIIGTEQIATTVTVPTGNTVVL 779

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLS 428
            GL+ +  ++  EGIP+LS+IP LG LFR    ++E  E+ I   P +V       R   
Sbjct: 780 GGLITETDKKDTEGIPVLSRIPGLGRLFREDVTSKERKELVIFIQPMVVNDDGSLQRASL 839

Query: 429 RPDDHYSVEDDAKAFFFNRV 448
           R D    V +DA   F +RV
Sbjct: 840 REDLRTKVGEDAYKVFPDRV 859


>gi|110643624|ref|YP_671354.1| outer membrane porin HofQ [Escherichia coli 536]
 gi|191171563|ref|ZP_03033111.1| protein transporter HofQ [Escherichia coli F11]
 gi|215488672|ref|YP_002331103.1| outer membrane porin HofQ [Escherichia coli O127:H6 str. E2348/69]
 gi|331649187|ref|ZP_08350273.1| protein transport protein HofQ [Escherichia coli M605]
 gi|110345216|gb|ABG71453.1| protein transport protein HofQ precursor [Escherichia coli 536]
 gi|190908190|gb|EDV67781.1| protein transporter HofQ [Escherichia coli F11]
 gi|215266744|emb|CAS11183.1| predicted fimbrial transporter [Escherichia coli O127:H6 str.
           E2348/69]
 gi|281180422|dbj|BAI56752.1| putative transport protein [Escherichia coli SE15]
 gi|331041685|gb|EGI13829.1| protein transport protein HofQ [Escherichia coli M605]
          Length = 412

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|26249985|ref|NP_756025.1| outer membrane porin HofQ [Escherichia coli CFT073]
 gi|227883521|ref|ZP_04001326.1| competence protein E [Escherichia coli 83972]
 gi|26110414|gb|AAN82599.1|AE016768_17 Protein transport protein hofQ precursor [Escherichia coli CFT073]
 gi|227839400|gb|EEJ49866.1| competence protein E [Escherichia coli 83972]
          Length = 412

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|300974788|ref|ZP_07172732.1| type IV pilus secretin PilQ [Escherichia coli MS 45-1]
 gi|301050407|ref|ZP_07197293.1| type IV pilus secretin PilQ [Escherichia coli MS 185-1]
 gi|300297875|gb|EFJ54260.1| type IV pilus secretin PilQ [Escherichia coli MS 185-1]
 gi|300410491|gb|EFJ94029.1| type IV pilus secretin PilQ [Escherichia coli MS 45-1]
 gi|315291661|gb|EFU51017.1| type IV pilus secretin PilQ [Escherichia coli MS 153-1]
          Length = 386

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|312968303|ref|ZP_07782513.1| transport protein hofQ [Escherichia coli 2362-75]
 gi|312287128|gb|EFR15038.1| transport protein hofQ [Escherichia coli 2362-75]
          Length = 386

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|300987128|ref|ZP_07178014.1| type IV pilus secretin PilQ [Escherichia coli MS 200-1]
 gi|300306272|gb|EFJ60792.1| type IV pilus secretin PilQ [Escherichia coli MS 200-1]
 gi|323189024|gb|EFZ74308.1| transport protein hofQ [Escherichia coli RN587/1]
 gi|324009420|gb|EGB78639.1| type IV pilus secretin PilQ [Escherichia coli MS 57-2]
 gi|324014615|gb|EGB83834.1| type IV pilus secretin PilQ [Escherichia coli MS 60-1]
 gi|330909424|gb|EGH37938.1| type 4 pilus biogenesis protein PilQ [Escherichia coli AA86]
          Length = 386

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|315295914|gb|EFU55227.1| type IV pilus secretin PilQ [Escherichia coli MS 16-3]
          Length = 386

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|255020086|ref|ZP_05292157.1| type II and III secretion system protein [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970448|gb|EET27939.1| type II and III secretion system protein [Acidithiobacillus caldus
           ATCC 51756]
          Length = 502

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 47/291 (16%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----FVSEGGDF--- 245
           E  V L V I E+R+ +L+  G   S      GP  +F  DF G      V  G D    
Sbjct: 161 EKMVWLDVNILEIRKSVLENFGVDWS--KQIPGPFAAFGKDFVGPRNVATVPLGQDLTQP 218

Query: 246 --------------SVKGVLDRFSF-----------------ETVLHALERATAIRTLAE 274
                         S+ G +D  +                   T+  AL    A   +A 
Sbjct: 219 PVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAY-LIAN 277

Query: 275 PTLTAISGQSASFTSGGQ-HLYKTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           P L+A SG    F +GGQ  + + +++   A  +VT  DYG+ L F P V     + +R+
Sbjct: 278 PQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRV 337

Query: 333 QTEVSE--PV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
             +VS+  P   + +N   +P +  R+++  + +  G T+V++GL+     +    +P L
Sbjct: 338 LADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWL 397

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
             IPILG LF+++ F    T++ I  TP +V   ++ ++ +      ++D+
Sbjct: 398 GDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDE 448


>gi|331654967|ref|ZP_08355966.1| protein transport protein HofQ [Escherichia coli M718]
 gi|331046982|gb|EGI19060.1| protein transport protein HofQ [Escherichia coli M718]
          Length = 412

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|170681657|ref|YP_001745634.1| outer membrane porin HofQ [Escherichia coli SMS-3-5]
 gi|170519375|gb|ACB17553.1| protein transporter HofQ [Escherichia coli SMS-3-5]
          Length = 412

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|310777966|ref|YP_003966299.1| type II and III secretion system protein [Ilyobacter polytropus DSM
           2926]
 gi|309747289|gb|ADO81951.1| type II and III secretion system protein [Ilyobacter polytropus DSM
           2926]
          Length = 554

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 9/179 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---VSSSTGATSVTTH-- 310
           F  V   +        LA+P +T ++G+ A+     +  YK    VS S  ATS +    
Sbjct: 321 FSAVYRNVVEDNTTEILAKPVITTLNGKKATIELTEEVPYKELEYVSDSGDATSTSYEFK 380

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           D G+ L  TP +   G I + +  E+SE V G     +P    RK +T V + +G T+ +
Sbjct: 381 DVGITLEVTPVITDDGMIKIEVTPEISE-VTGYTDDGVPYVSSRKVETNVIVRNGQTLAI 439

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
            GL+KD         P LSKIPILG LF++S   + +T + I  TP   K +  RD+S+
Sbjct: 440 GGLIKDTKSTTDTKDPYLSKIPILGYLFKSSSNEKSKTNLMIFITP---KIIMSRDMSQ 495


>gi|293416792|ref|ZP_06659429.1| transporter HofQ [Escherichia coli B185]
 gi|291431368|gb|EFF04353.1| transporter HofQ [Escherichia coli B185]
          Length = 412

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|306816271|ref|ZP_07450409.1| outer membrane porin HofQ [Escherichia coli NC101]
 gi|222035093|emb|CAP77838.1| Protein transport protein hofQ [Escherichia coli LF82]
 gi|305850667|gb|EFM51124.1| outer membrane porin HofQ [Escherichia coli NC101]
 gi|307628452|gb|ADN72756.1| outer membrane porin HofQ [Escherichia coli UM146]
 gi|315286025|gb|EFU45463.1| type IV pilus secretin PilQ [Escherichia coli MS 110-3]
          Length = 386

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|213585294|ref|ZP_03367120.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 412

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +G 
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGT 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409


>gi|218706981|ref|YP_002414500.1| outer membrane porin HofQ [Escherichia coli UMN026]
 gi|293406969|ref|ZP_06650893.1| hofQ [Escherichia coli FVEC1412]
 gi|298382711|ref|ZP_06992306.1| hofQ [Escherichia coli FVEC1302]
 gi|218434078|emb|CAR14995.1| fimbrial transporter [Escherichia coli UMN026]
 gi|291425780|gb|EFE98814.1| hofQ [Escherichia coli FVEC1412]
 gi|298276547|gb|EFI18065.1| hofQ [Escherichia coli FVEC1302]
          Length = 412

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|300898927|ref|ZP_07117225.1| type IV pilus secretin PilQ [Escherichia coli MS 198-1]
 gi|300357442|gb|EFJ73312.1| type IV pilus secretin PilQ [Escherichia coli MS 198-1]
          Length = 386

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|218702134|ref|YP_002409763.1| outer membrane porin HofQ [Escherichia coli IAI39]
 gi|331664993|ref|ZP_08365894.1| protein transport protein HofQ [Escherichia coli TA143]
 gi|218372120|emb|CAR19982.1| fimbrial transporter [Escherichia coli IAI39]
 gi|331057503|gb|EGI29489.1| protein transport protein HofQ [Escherichia coli TA143]
          Length = 412

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|229577502|ref|YP_001178510.2| outer membrane porin HofQ [Enterobacter sp. 638]
          Length = 413

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248
           QV L+  I  +    L+++G + ++       +++  A   G+  + G D SV       
Sbjct: 181 QVQLEAHIVTINEKSLRELGVKWNL-------AEAQGAGAPGQVTTMGADLSVANATTHV 233

Query: 249 ----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
               G +D    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 234 GFNIGRIDGRLLDLELSALEQKQQLEIIASPRLLASHMQPASIKQGSEIPYQVSSGDSGA 293

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TP VL  GR+ L+++   + P  V+    G+  +   ++ +T VE+
Sbjct: 294 TSVEFKEAVLGMEVTPVVLPNGRVRLKLRISENMPGQVLQQADGETLAIDKQEIETQVEV 353

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +P L  +P+LG  FR+   + E  E+ +  TP L+
Sbjct: 354 KSGETLALGGIFSQKNKTASDSVPGLGHVPLLGQFFRHDGKDNERRELVVFITPRLI 410


>gi|301019596|ref|ZP_07183756.1| type IV pilus secretin PilQ [Escherichia coli MS 69-1]
 gi|300399184|gb|EFJ82722.1| type IV pilus secretin PilQ [Escherichia coli MS 69-1]
          Length = 386

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|307555474|gb|ADN48249.1| protein transport protein HofQ precursor [Escherichia coli ABU
           83972]
          Length = 377

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 145 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 197

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 198 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 257

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 258 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 317

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 318 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 374


>gi|220932698|ref|YP_002509606.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
 gi|219994008|gb|ACL70611.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
          Length = 602

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 11/205 (5%)

Query: 225 GPSKSFAADFGGK----FVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTA 279
            P      ++ G+    F +  G  + K VLD    F   + AL     +   A P +T 
Sbjct: 378 NPVIKLGMEYDGEEELLFDTSMGKLTYKSVLDLPDDFYLKIEALVTEGLLTVKARPNITT 437

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTH---DYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ++GQ A    G    YK   +       T +   + GV L  TP V S G I L+++ +V
Sbjct: 438 LNGQQAMIDVGTVQYYKVKQTDGEGNEETQYQSINAGVSLTVTPWVSSSGEITLKLRPQV 497

Query: 337 SEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           S   IG  A +  P    R+ DTTV +  G T+V+ GL++D        +P L+ IP++G
Sbjct: 498 SN--IGAAAAEGPPQVSRREVDTTVRVKDGQTVVIGGLIQDVGTNTTSKVPFLANIPLIG 555

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            LF++   N  +TE+ I  TP ++K
Sbjct: 556 KLFKSRNNNVNQTELIIFITPRVLK 580


>gi|146338379|ref|YP_001203427.1| putative general secretion pathway protein D [Bradyrhizobium sp.
           ORS278]
 gi|146191185|emb|CAL75190.1| Putative general secretion pathway protein D [Bradyrhizobium sp.
           ORS278]
          Length = 780

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 13/186 (6%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDY--- 312
           +L AL   T ++ L+ P+L  I  Q+A+   G Q    T S++   T  T V T DY   
Sbjct: 578 ILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQVPVSTGSATVLTTNNTVVNTIDYRNT 637

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G++L   P V   G + L I+ E+S           P+   RK  ++V + SG T++LAG
Sbjct: 638 GIILRVAPRVNENGNVRLEIEQEISNVSPQTANSLTPTVAQRKVKSSVAVASGQTVLLAG 697

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L+ +  Q  + G+P + +IP  G LF N+  +R  TE+ I      ++P  +RD +  D 
Sbjct: 698 LISETHQGTRTGLPGVDQIPGFGDLFSNNDRSRGRTELII-----FIRPQIIRDGT--DA 750

Query: 433 HYSVED 438
           HY  E+
Sbjct: 751 HYVAEE 756


>gi|297519102|ref|ZP_06937488.1| outer membrane porin HofQ [Escherichia coli OP50]
 gi|300907468|ref|ZP_07125113.1| type IV pilus secretin PilQ [Escherichia coli MS 84-1]
 gi|300931080|ref|ZP_07146434.1| type IV pilus secretin PilQ [Escherichia coli MS 187-1]
 gi|301302267|ref|ZP_07208399.1| type IV pilus secretin PilQ [Escherichia coli MS 124-1]
 gi|300400806|gb|EFJ84344.1| type IV pilus secretin PilQ [Escherichia coli MS 84-1]
 gi|300461100|gb|EFK24593.1| type IV pilus secretin PilQ [Escherichia coli MS 187-1]
 gi|300842430|gb|EFK70190.1| type IV pilus secretin PilQ [Escherichia coli MS 124-1]
 gi|315255979|gb|EFU35947.1| type IV pilus secretin PilQ [Escherichia coli MS 85-1]
 gi|320199559|gb|EFW74149.1| Type IV pilus biogenesis protein PilQ [Escherichia coli EC4100B]
 gi|323154220|gb|EFZ40423.1| transport protein hofQ [Escherichia coli EPECa14]
 gi|323162775|gb|EFZ48612.1| transport protein hofQ [Escherichia coli E128010]
          Length = 386

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|323966201|gb|EGB61637.1| type IV pilus secretin PilQ [Escherichia coli M863]
          Length = 412

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|294793490|ref|ZP_06758627.1| bacterial type II and III secretion system protein [Veillonella sp.
           3_1_44]
 gi|294455060|gb|EFG23432.1| bacterial type II and III secretion system protein [Veillonella sp.
           3_1_44]
          Length = 412

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 20/226 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGV 250
           QV L+ TI  + +   K+ GF+ S   +TG     + S+ A  FG     E   F VK  
Sbjct: 192 QVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPE 251

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT- 309
           L           +E +     +A+P++ A++G++A    G +      S   G    +T 
Sbjct: 252 LS---------LMESSGKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTR 302

Query: 310 -HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGG 366
             + G+ L++TP + +   +  +I  EVS P++     +M +Y++  R+A T V L  G 
Sbjct: 303 YEEVGIKLNYTPIITADDGVDAKIHAEVSTPIM---VSEMKAYKISTRQAHTRVRLQPGE 359

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +V+ GL+ +  Q   + IP+L  IP+LG LFR+SR  ++  E+ +
Sbjct: 360 VLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDSIEMLM 405


>gi|325498932|gb|EGC96791.1| outer membrane porin HofQ [Escherichia fergusonii ECD227]
          Length = 385

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G + +   +      G   + ++D      +    F++  +
Sbjct: 153 QVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTTLSSDLAVATATTQVGFNIGRI 212

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R   +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 213 NGRL-LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 271

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GRI L++    + P  V+  + G++ +   ++ +T VE+ SG T+
Sbjct: 272 EAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGEVLTIDKQEIETQVEVKSGETL 331

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  K+ IPLL  IP LG LF +     E  E+ +  TP LV
Sbjct: 332 ALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENERRELVVFITPRLV 382


>gi|300937316|ref|ZP_07152157.1| type IV pilus secretin PilQ [Escherichia coli MS 21-1]
 gi|300457639|gb|EFK21132.1| type IV pilus secretin PilQ [Escherichia coli MS 21-1]
          Length = 386

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|145298443|ref|YP_001141284.1| S-protein secretion component D [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851215|gb|ABO89536.1| S-protein secretion component D [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 719

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 110/238 (46%), Gaps = 29/238 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           QV L+  IAEV+      +GF+ +     ITG +SG             + + G+ ++ G
Sbjct: 464 QVLLQAVIAEVKLTNDSSLGFEWNVNKGDITGGTSG------------LIQQTGNLNLAG 511

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---- 305
           V    + +    AL    A + L+ P L  +  ++AS   G Q + KT   S G++    
Sbjct: 512 VFGDVTAK-FAAALSEGNA-KVLSSPRLVVLDQETASIKIGDQIVVKTGEISNGSSGNDP 569

Query: 306 SVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            VTT     D G+ L  TP++   G I + I  E+S   +    GD P    R   + + 
Sbjct: 570 QVTTSYKYIDTGLSLEITPSINDDGLIEMVISQEISS--VSAGGGDTPPINRRAVQSKLL 627

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             SG T+ L GLL       +E +PLL  IP+LG LF+      E+TE+ +  TP+++
Sbjct: 628 ADSGKTVYLGGLLSQSNTNNEEKVPLLGDIPLLGNLFKYQTKKIEKTELVLLITPYVI 685


>gi|145597786|ref|YP_001161862.1| outer membrane secretin family protein [Yersinia pestis Pestoides
           F]
 gi|229837374|ref|ZP_04457537.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Pestoides A]
 gi|145209482|gb|ABP38889.1| outer membrane secretin family protein [Yersinia pestis Pestoides
           F]
 gi|229705497|gb|EEO91507.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Pestoides A]
          Length = 149

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 75/126 (59%), Gaps = 6/126 (4%)

Query: 327 RIGLRIQTEVS--EPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           RI + +  EVS  + V  +  GD  PS R+RKA+TTVEL  G + +L GL+    ++  +
Sbjct: 6   RIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLK 65

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            IP +  +P+LGALFRN++  R ++E+ + AT  LVKPV+ R +  PD  ++   +    
Sbjct: 66  KIPFIGDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTVER--- 122

Query: 444 FFNRVN 449
           FFN  N
Sbjct: 123 FFNLTN 128


>gi|206575908|ref|YP_002236236.1| protein transporter HofQ [Klebsiella pneumoniae 342]
 gi|206564966|gb|ACI06742.1| protein transporter HofQ [Klebsiella pneumoniae 342]
          Length = 413

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSK--SFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G +  +  TG S G  +  + ++D      S    F++ G 
Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAETGGSPGSGQITTLSSDMSVNDASTRAGFNI-GK 239

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 240 INGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 299

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GR+ L+++   + P  V+  + G+  +   ++ +T VE+ SG T+
Sbjct: 300 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETL 359

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 360 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410


>gi|297570196|ref|YP_003691540.1| general secretion pathway protein D [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926111|gb|ADH86921.1| general secretion pathway protein D [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 690

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 110/228 (48%), Gaps = 26/228 (11%)

Query: 214 GFQHSITGSSSGPSKSFAADFG-GKFVSEGGDFS-VKGVLDR--FSFETVLHALERATAI 269
           G   S++G ++G   S AA  G G F    G FS    +L R  FSF  +++AL R    
Sbjct: 397 GSGASMSGIAAGDEGSIAALAGLGGF--NMGVFSGSTEILGREFFSFGALVNALARDGDT 454

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPT 321
             L+ P+L  +  Q A    G    + T S + GAT        +V   D G+ L   P 
Sbjct: 455 NILSTPSLVTMDNQEAEIIVGQNVPFLTGSFTEGATGVGGSPFQTVERRDVGIKLRVKPQ 514

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADTTVELPSGGTIVLAGLLKDDI 378
           V     I L+I+ EVS     V   D+ +  V   R  +T+V +  G  +VL GL+ DD+
Sbjct: 515 VTEGDVIRLQIEQEVSS----VERDDLAAGLVTNTRNINTSVLVEDGKVLVLGGLISDDV 570

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           Q+    +PLL  IP+ GALFR++R  R +  + +      ++PV +RD
Sbjct: 571 QETVSKVPLLGDIPLFGALFRHTRSERSKRNLMV-----FLRPVILRD 613


>gi|195934879|ref|ZP_03080261.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. EC4024]
 gi|320191599|gb|EFW66249.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7
           str. EC1212]
 gi|326337648|gb|EGD61483.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7
           str. 1044]
 gi|326344601|gb|EGD68350.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7
           str. 1125]
          Length = 386

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|331685028|ref|ZP_08385614.1| protein transport protein HofQ [Escherichia coli H299]
 gi|331077399|gb|EGI48611.1| protein transport protein HofQ [Escherichia coli H299]
          Length = 412

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTALGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|327251020|gb|EGE62713.1| transport protein hofQ [Escherichia coli STEC_7v]
          Length = 386

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|193061725|ref|ZP_03042822.1| protein transporter HofQ [Escherichia coli E22]
 gi|193068780|ref|ZP_03049740.1| protein transporter HofQ [Escherichia coli E110019]
 gi|194427057|ref|ZP_03059609.1| protein transporter HofQ [Escherichia coli B171]
 gi|194435813|ref|ZP_03067916.1| protein transporter HofQ [Escherichia coli 101-1]
 gi|253771782|ref|YP_003034613.1| outer membrane porin HofQ [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254163319|ref|YP_003046427.1| outer membrane porin HofQ [Escherichia coli B str. REL606]
 gi|256020735|ref|ZP_05434600.1| outer membrane porin HofQ [Shigella sp. D9]
 gi|260846175|ref|YP_003223953.1| putative fimbrial transporter HofQ [Escherichia coli O103:H2 str.
           12009]
 gi|260857498|ref|YP_003231389.1| putative fimbrial transporter HofQ [Escherichia coli O26:H11 str.
           11368]
 gi|260870117|ref|YP_003236519.1| putative fimbrial transporter HofQ [Escherichia coli O111:H- str.
           11128]
 gi|332281935|ref|ZP_08394348.1| outer membrane porin HofQ [Shigella sp. D9]
 gi|192932515|gb|EDV85112.1| protein transporter HofQ [Escherichia coli E22]
 gi|192957856|gb|EDV88299.1| protein transporter HofQ [Escherichia coli E110019]
 gi|194415018|gb|EDX31288.1| protein transporter HofQ [Escherichia coli B171]
 gi|194425356|gb|EDX41340.1| protein transporter HofQ [Escherichia coli 101-1]
 gi|242378917|emb|CAQ33712.1| protein involved in utilization of DNA as a carbon source
           [Escherichia coli BL21(DE3)]
 gi|253322826|gb|ACT27428.1| type IV pilus secretin PilQ [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975220|gb|ACT40891.1| predicted fimbrial transporter [Escherichia coli B str. REL606]
 gi|253979376|gb|ACT45046.1| predicted fimbrial transporter [Escherichia coli BL21(DE3)]
 gi|257756147|dbj|BAI27649.1| predicted fimbrial transporter HofQ [Escherichia coli O26:H11 str.
           11368]
 gi|257761322|dbj|BAI32819.1| predicted fimbrial transporter HofQ [Escherichia coli O103:H2 str.
           12009]
 gi|257766473|dbj|BAI37968.1| predicted fimbrial transporter HofQ [Escherichia coli O111:H- str.
           11128]
 gi|323376744|gb|ADX49012.1| type IV pilus secretin PilQ [Escherichia coli KO11]
 gi|323959609|gb|EGB55261.1| type IV pilus secretin PilQ [Escherichia coli H489]
 gi|323969989|gb|EGB65264.1| type IV pilus secretin PilQ [Escherichia coli TA007]
 gi|332104287|gb|EGJ07633.1| outer membrane porin HofQ [Shigella sp. D9]
          Length = 412

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|323974808|gb|EGB69920.1| type IV pilus secretin PilQ [Escherichia coli TW10509]
          Length = 412

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|300822816|ref|ZP_07102952.1| type IV pilus secretin PilQ [Escherichia coli MS 119-7]
 gi|300524582|gb|EFK45651.1| type IV pilus secretin PilQ [Escherichia coli MS 119-7]
 gi|324018703|gb|EGB87922.1| type IV pilus secretin PilQ [Escherichia coli MS 117-3]
 gi|332996422|gb|EGK16049.1| transport protein hofQ [Shigella flexneri VA-6]
 gi|332996664|gb|EGK16289.1| transport protein hofQ [Shigella flexneri K-272]
          Length = 386

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|188492932|ref|ZP_03000202.1| protein transporter HofQ [Escherichia coli 53638]
 gi|188488131|gb|EDU63234.1| protein transporter HofQ [Escherichia coli 53638]
          Length = 412

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|332345342|gb|AEE58676.1| transport protein PilQ [Escherichia coli UMNK88]
          Length = 386

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|324111701|gb|EGC05681.1| type IV pilus secretin PilQ [Escherichia fergusonii B253]
          Length = 412

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G + +   +      G   + ++D      +    F++  +
Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTTLSSDLAVATATTQVGFNIGRI 239

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R   +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 240 NGRL-LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 298

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GRI L++    + P  V+  + G++ +   ++ +T VE+ SG T+
Sbjct: 299 EAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGEVLTIDKQEIETQVEVKSGETL 358

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  K+ IPLL  IP LG LF +     E  E+ +  TP LV
Sbjct: 359 ALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENERRELVVFITPRLV 409


>gi|320175756|gb|EFW50842.1| Type IV pilus biogenesis protein PilQ [Shigella dysenteriae CDC
           74-1112]
          Length = 386

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFITPRLV 383


>gi|293412807|ref|ZP_06655475.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291468454|gb|EFF10947.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 412

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|15803894|ref|NP_289930.1| outer membrane porin HofQ [Escherichia coli O157:H7 EDL933]
 gi|15833487|ref|NP_312260.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. Sakai]
 gi|168747135|ref|ZP_02772157.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113]
 gi|168753140|ref|ZP_02778147.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401]
 gi|168759412|ref|ZP_02784419.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501]
 gi|168765735|ref|ZP_02790742.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486]
 gi|168772721|ref|ZP_02797728.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196]
 gi|168779471|ref|ZP_02804478.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076]
 gi|168785192|ref|ZP_02810199.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC869]
 gi|168797158|ref|ZP_02822165.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC508]
 gi|208807105|ref|ZP_03249442.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206]
 gi|208814350|ref|ZP_03255679.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045]
 gi|208821093|ref|ZP_03261413.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042]
 gi|209400800|ref|YP_002272825.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115]
 gi|217324393|ref|ZP_03440477.1| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588]
 gi|254795305|ref|YP_003080142.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. TW14359]
 gi|261224673|ref|ZP_05938954.1| predicted fimbrial transporter [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254432|ref|ZP_05946965.1| predicted fimbrial transporter [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284727|ref|YP_003501545.1| putative fimbrial transporter [Escherichia coli O55:H7 str. CB9615]
 gi|12518014|gb|AAG58491.1|AE005561_4 putative transport portein [Escherichia coli O157:H7 str. EDL933]
 gi|13363707|dbj|BAB37656.1| putative transport portein [Escherichia coli O157:H7 str. Sakai]
 gi|187771720|gb|EDU35564.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196]
 gi|188018292|gb|EDU56414.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113]
 gi|189002616|gb|EDU71602.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076]
 gi|189359008|gb|EDU77427.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401]
 gi|189364497|gb|EDU82916.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486]
 gi|189369829|gb|EDU88245.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501]
 gi|189374266|gb|EDU92682.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC869]
 gi|189380180|gb|EDU98596.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC508]
 gi|208726906|gb|EDZ76507.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206]
 gi|208735627|gb|EDZ84314.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045]
 gi|208741216|gb|EDZ88898.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042]
 gi|209162200|gb|ACI39633.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115]
 gi|209756640|gb|ACI76632.1| putative transport protein [Escherichia coli]
 gi|209756642|gb|ACI76633.1| putative transport protein [Escherichia coli]
 gi|209756644|gb|ACI76634.1| putative transport protein [Escherichia coli]
 gi|209756646|gb|ACI76635.1| putative transport protein [Escherichia coli]
 gi|217320614|gb|EEC29038.1| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588]
 gi|254594705|gb|ACT74066.1| predicted fimbrial transporter [Escherichia coli O157:H7 str.
           TW14359]
 gi|290764600|gb|ADD58561.1| predicted fimbrial transporter [Escherichia coli O55:H7 str.
           CB9615]
 gi|320639673|gb|EFX09267.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. G5101]
 gi|320655674|gb|EFX23597.1| outer membrane porin HofQ [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661459|gb|EFX28874.1| outer membrane porin HofQ [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666481|gb|EFX33464.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. LSU-61]
          Length = 412

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|323174021|gb|EFZ59649.1| transport protein hofQ [Escherichia coli LT-68]
          Length = 386

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|307311947|ref|ZP_07591585.1| type IV pilus secretin PilQ [Escherichia coli W]
 gi|306908091|gb|EFN38591.1| type IV pilus secretin PilQ [Escherichia coli W]
 gi|315062668|gb|ADT76995.1| dsDNA transporter subunit [Escherichia coli W]
          Length = 402

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 170 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 222

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 223 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 282

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 283 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 342

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 343 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 399


>gi|284923383|emb|CBG36477.1| protein transport protein [Escherichia coli 042]
          Length = 386

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|218550647|ref|YP_002384438.1| outer membrane porin HofQ [Escherichia fergusonii ATCC 35469]
 gi|218358188|emb|CAQ90835.1| fimbrial transporter [Escherichia fergusonii ATCC 35469]
          Length = 426

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G + +   +      G   + ++D      +    F++  +
Sbjct: 194 QVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTTLSSDLAVATATTQVGFNIGRI 253

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R   +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 254 NGRL-LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 312

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GRI L++    + P  V+  + G++ +   ++ +T VE+ SG T+
Sbjct: 313 EAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGEVLTIDKQEIETQVEVKSGETL 372

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  K+ IPLL  IP LG LF +     E  E+ +  TP LV
Sbjct: 373 ALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENERRELVVFITPRLV 423


>gi|300815414|ref|ZP_07095639.1| type IV pilus secretin PilQ [Escherichia coli MS 107-1]
 gi|300919331|ref|ZP_07135842.1| type IV pilus secretin PilQ [Escherichia coli MS 115-1]
 gi|300926924|ref|ZP_07142688.1| type IV pilus secretin PilQ [Escherichia coli MS 182-1]
 gi|300946869|ref|ZP_07161109.1| type IV pilus secretin PilQ [Escherichia coli MS 116-1]
 gi|300956717|ref|ZP_07168988.1| type IV pilus secretin PilQ [Escherichia coli MS 175-1]
 gi|301329693|ref|ZP_07222442.1| type IV pilus secretin PilQ [Escherichia coli MS 78-1]
 gi|301645828|ref|ZP_07245743.1| type IV pilus secretin PilQ [Escherichia coli MS 146-1]
 gi|309794656|ref|ZP_07689078.1| type IV pilus secretin PilQ [Escherichia coli MS 145-7]
 gi|110616771|gb|ABF05438.1| putative transport portein [Shigella flexneri 5 str. 8401]
 gi|300316473|gb|EFJ66257.1| type IV pilus secretin PilQ [Escherichia coli MS 175-1]
 gi|300413587|gb|EFJ96897.1| type IV pilus secretin PilQ [Escherichia coli MS 115-1]
 gi|300417082|gb|EFK00393.1| type IV pilus secretin PilQ [Escherichia coli MS 182-1]
 gi|300453478|gb|EFK17098.1| type IV pilus secretin PilQ [Escherichia coli MS 116-1]
 gi|300532306|gb|EFK53368.1| type IV pilus secretin PilQ [Escherichia coli MS 107-1]
 gi|300844205|gb|EFK71965.1| type IV pilus secretin PilQ [Escherichia coli MS 78-1]
 gi|301075906|gb|EFK90712.1| type IV pilus secretin PilQ [Escherichia coli MS 146-1]
 gi|308121706|gb|EFO58968.1| type IV pilus secretin PilQ [Escherichia coli MS 145-7]
 gi|315619010|gb|EFU99593.1| transport protein hofQ [Escherichia coli 3431]
 gi|320181878|gb|EFW56784.1| Type IV pilus biogenesis protein PilQ [Shigella boydii ATCC 9905]
 gi|323182850|gb|EFZ68251.1| transport protein hofQ [Escherichia coli 1357]
 gi|332085536|gb|EGI90702.1| transport protein hofQ [Shigella boydii 5216-82]
          Length = 386

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|120612787|ref|YP_972465.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
 gi|120591251|gb|ABM34691.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
          Length = 829

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 32/252 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------ 242
           QV ++ +I EV  D   Q G Q +   +++GPS    A   G+ ++ G            
Sbjct: 537 QVLIEASIVEVTLDDTLQYGLQWAF--NNAGPSNLNGA---GQLLTNGPSDKTPIGSSIP 591

Query: 243 ----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297
                 FS        S   VL+AL     ++ ++ P+L  +   +A  + G Q   KT 
Sbjct: 592 TPTSSGFSYALSNSLGSVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTG 651

Query: 298 --VSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--- 348
             ++S +G  SV       D GV L  TP+V +   + ++I   V++  +  N+G +   
Sbjct: 652 SLITSVSGGNSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTD-AVADNSGSISLQ 710

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P ++ R+  + V + SG  IVL GL++D     K G+PLL  IP++G+LF N+      T
Sbjct: 711 PVFQQRQITSKVAVRSGEAIVLGGLIRDTSNSSKSGVPLLQDIPLVGSLFSNNGKTGNRT 770

Query: 409 EIFIAATPFLVK 420
           E+ +  TP +V+
Sbjct: 771 ELLVVITPKVVR 782


>gi|301023148|ref|ZP_07186952.1| type IV pilus secretin PilQ [Escherichia coli MS 196-1]
 gi|299880971|gb|EFI89182.1| type IV pilus secretin PilQ [Escherichia coli MS 196-1]
          Length = 389

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 157 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 209

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 330 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 386


>gi|187731764|ref|YP_001882066.1| outer membrane porin HofQ [Shigella boydii CDC 3083-94]
 gi|187428756|gb|ACD08030.1| protein transporter HofQ [Shigella boydii CDC 3083-94]
          Length = 412

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFITPRLV 409


>gi|209920843|ref|YP_002294927.1| outer membrane porin HofQ [Escherichia coli SE11]
 gi|218697071|ref|YP_002404738.1| outer membrane porin HofQ [Escherichia coli 55989]
 gi|331670209|ref|ZP_08371048.1| protein transport protein HofQ [Escherichia coli TA271]
 gi|331679451|ref|ZP_08380121.1| protein transport protein HofQ [Escherichia coli H591]
 gi|209914102|dbj|BAG79176.1| putative transport protein [Escherichia coli SE11]
 gi|218353803|emb|CAV00141.1| fimbrial transporter [Escherichia coli 55989]
 gi|323944387|gb|EGB40462.1| type IV pilus secretin PilQ [Escherichia coli H120]
 gi|324116416|gb|EGC10335.1| type IV pilus secretin PilQ [Escherichia coli E1167]
 gi|331062271|gb|EGI34191.1| protein transport protein HofQ [Escherichia coli TA271]
 gi|331072623|gb|EGI43948.1| protein transport protein HofQ [Escherichia coli H591]
          Length = 412

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|320197345|gb|EFW71960.1| Type IV pilus biogenesis protein PilQ [Escherichia coli WV_060327]
          Length = 386

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTALGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|333013071|gb|EGK32447.1| transport protein hofQ [Shigella flexneri K-227]
          Length = 386

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|323164950|gb|EFZ50741.1| transport protein hofQ [Shigella sonnei 53G]
          Length = 385

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 153 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 205

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 206 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 265

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 266 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 325

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 326 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 382


>gi|289675697|ref|ZP_06496587.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae FF5]
          Length = 137

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           A P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI L++
Sbjct: 1   ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 60

Query: 333 QTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
             EVSE      I +    +P+  +R+ DT++ L  G + V++GL+        +  P L
Sbjct: 61  APEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGL 120

Query: 389 SKIPILGALFRNSRFNR 405
             IPILGA FR+S+  R
Sbjct: 121 GDIPILGAFFRSSQIQR 137


>gi|16131268|ref|NP_417850.1| protein required for the utilization of DNA as a carbon source;
           fimbrial transporter homolog [Escherichia coli str. K-12
           substr. MG1655]
 gi|74313896|ref|YP_312315.1| outer membrane porin HofQ [Shigella sonnei Ss046]
 gi|89110619|ref|AP_004399.1| predicted fimbrial transporter [Escherichia coli str. K-12 substr.
           W3110]
 gi|157158971|ref|YP_001464845.1| outer membrane porin HofQ [Escherichia coli E24377A]
 gi|170082908|ref|YP_001732228.1| fimbrial transporter [Escherichia coli str. K-12 substr. DH10B]
 gi|218555936|ref|YP_002388849.1| outer membrane porin HofQ [Escherichia coli IAI1]
 gi|229774932|ref|YP_690743.2| outer membrane porin HofQ [Shigella flexneri 5 str. 8401]
 gi|238902482|ref|YP_002928278.1| putative fimbrial transporter [Escherichia coli BW2952]
 gi|256025882|ref|ZP_05439747.1| outer membrane porin HofQ [Escherichia sp. 4_1_40B]
 gi|293453697|ref|ZP_06664116.1| hofQ [Escherichia coli B088]
 gi|307140075|ref|ZP_07499431.1| outer membrane porin HofQ [Escherichia coli H736]
 gi|331644090|ref|ZP_08345219.1| protein transport protein HofQ [Escherichia coli H736]
 gi|1170332|sp|P34749|HOFQ_ECOLI RecName: Full=Putative DNA transport protein HofQ; Flags: Precursor
 gi|606325|gb|AAA58188.1| hopQ [Escherichia coli str. K-12 substr. MG1655]
 gi|1789793|gb|AAC76416.1| protein required for the utilization of DNA as a carbon source;
           fimbrial transporter homolog [Escherichia coli str. K-12
           substr. MG1655]
 gi|73857373|gb|AAZ90080.1| putative transport portein [Shigella sonnei Ss046]
 gi|85676650|dbj|BAE77900.1| predicted fimbrial transporter [Escherichia coli str. K12 substr.
           W3110]
 gi|157081001|gb|ABV20709.1| protein transporter HofQ [Escherichia coli E24377A]
 gi|169890743|gb|ACB04450.1| predicted fimbrial transporter [Escherichia coli str. K-12 substr.
           DH10B]
 gi|218362704|emb|CAR00330.1| fimbrial transporter [Escherichia coli IAI1]
 gi|238862385|gb|ACR64383.1| predicted fimbrial transporter [Escherichia coli BW2952]
 gi|260447590|gb|ACX38012.1| type IV pilus secretin PilQ [Escherichia coli DH1]
 gi|291321823|gb|EFE61254.1| hofQ [Escherichia coli B088]
 gi|315137967|dbj|BAJ45126.1| outer membrane porin HofQ [Escherichia coli DH1]
 gi|323939390|gb|EGB35601.1| type IV pilus secretin PilQ [Escherichia coli E482]
 gi|331036384|gb|EGI08610.1| protein transport protein HofQ [Escherichia coli H736]
          Length = 412

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|323179085|gb|EFZ64659.1| transport protein hofQ [Escherichia coli 1180]
          Length = 377

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 145 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 197

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 198 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 257

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 258 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 317

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 318 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 374


>gi|293393378|ref|ZP_06637690.1| type IV pilus secretin PilQ [Serratia odorifera DSM 4582]
 gi|291424115|gb|EFE97332.1| type IV pilus secretin PilQ [Serratia odorifera DSM 4582]
          Length = 411

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 5/232 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +QV L   I  + R+ L+++G +  +T       +    +F      E    +V   L R
Sbjct: 179 EQVQLAAHIVTISREDLRELGVRWGLTADQRAAKRLRIDNFSVGLPLERSAINVGFHLAR 238

Query: 254 FS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            S    +  L ALE+  A+  +A P L   + Q+AS   G +  Y+  S ++GAT++   
Sbjct: 239 VSGRLLDLELMALEQENAVEIIASPRLLTANQQTASIKQGTEIPYEVSSGASGATAIQFR 298

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTI 368
           +  + +  TP +L  G I L +    + P   V  G   +  + K +  T V + +G T+
Sbjct: 299 EAVLGMEVTPRILPNGLITLTLHISQNMPGRAVRQGSGEALAIDKQEIKTQVTVKNGETV 358

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           VL G+ +       + +P L  +P+LG+LF+ S    ++ E+ I  TP L+K
Sbjct: 359 VLGGIFQRQRSHGADKVPGLGDVPLLGSLFKQSSKQHKKRELVIFITPTLIK 410


>gi|197265045|ref|ZP_03165119.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197243300|gb|EDY25920.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 426

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  ++        A   G   +   D SV     R 
Sbjct: 194 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 246

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 247 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 306

Query: 305 TSVTTHDYGVVLHFTPTVLSPG--RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  G  R+ L I   V   V+    G++ +   ++ +T VE+
Sbjct: 307 TSVEFKEAVLGMEVTPTVLQKGLIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 366

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 367 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 423


>gi|82545746|ref|YP_409693.1| outer membrane porin HofQ [Shigella boydii Sb227]
 gi|81247157|gb|ABB67865.1| putative transport portein [Shigella boydii Sb227]
          Length = 412

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFITPRLV 409


>gi|309785870|ref|ZP_07680501.1| transport protein hofQ [Shigella dysenteriae 1617]
 gi|308926990|gb|EFP72466.1| transport protein hofQ [Shigella dysenteriae 1617]
          Length = 267

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 35  QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 87

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 88  GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 147

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 148 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 207

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 208 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 264


>gi|238896859|ref|YP_002921604.1| outer membrane porin HofQ [Klebsiella pneumoniae NTUH-K2044]
 gi|238549186|dbj|BAH65537.1| outer membrane porin [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 414

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G +  +  + S P         G+  +   D SV     R 
Sbjct: 182 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPG-------SGQITTLSSDVSVNDASTRA 234

Query: 255 SFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F             L ALER   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 235 GFNIGKINGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGA 294

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GR+ L+++   + P  V+    G+  +   ++ +T VE+
Sbjct: 295 TSVEFKEAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEV 354

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 355 RSGETLALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 411


>gi|152972270|ref|YP_001337416.1| outer membrane porin HofQ [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150957119|gb|ABR79149.1| putative transport portein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 413

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G +  +  + S P         G+  +   D SV     R 
Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPG-------SGQITTLSSDVSVNDASTRA 233

Query: 255 SFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F             L ALER   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 234 GFNIGKINGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGA 293

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GR+ L+++   + P  V+    G+  +   ++ +T VE+
Sbjct: 294 TSVEFKEAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEV 353

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 354 RSGETLALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410


>gi|320186741|gb|EFW61464.1| Type IV pilus biogenesis protein PilQ [Shigella flexneri CDC
           796-83]
          Length = 386

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFITPRLV 383


>gi|330012388|ref|ZP_08307367.1| type IV pilus secretin PilQ [Klebsiella sp. MS 92-3]
 gi|328533849|gb|EGF60524.1| type IV pilus secretin PilQ [Klebsiella sp. MS 92-3]
          Length = 408

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G +  +  + S P         G+  +   D SV     R 
Sbjct: 176 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPG-------SGQITTLSSDVSVNDASTRA 228

Query: 255 SFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F             L ALER   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 229 GFNIGKINGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGA 288

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GR+ L+++   + P  V+    G+  +   ++ +T VE+
Sbjct: 289 TSVEFKEAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEV 348

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 349 RSGETLALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 405


>gi|332090365|gb|EGI95463.1| transport protein hofQ [Shigella boydii 3594-74]
          Length = 385

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 153 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 205

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 206 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 265

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 266 TSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 325

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 326 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFITPRLV 382


>gi|167466375|ref|ZP_02331079.1| putative outer membrane secretin family protein [Yersinia pestis
           FV-1]
          Length = 140

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 6/118 (5%)

Query: 335 EVS--EPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           EVS  + V  +  GD  PS R+RKA+TTVEL  G + +L GL+    ++  + IP +  I
Sbjct: 5   EVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDI 64

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           P+LGALFRN++  R ++E+ + AT  LVKPV+ R +  PD  ++   +    FFN  N
Sbjct: 65  PLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTVER---FFNLTN 119


>gi|291086346|ref|ZP_06355526.2| hypothetical protein CIT292_10180 [Citrobacter youngae ATCC 29220]
 gi|291067951|gb|EFE06060.1| protein transport protein HofQ [Citrobacter youngae ATCC 29220]
          Length = 386

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKG 249
           +QV L   I  +    L+++G + S+  +      G   + A+D      +    F++ G
Sbjct: 153 EQVELAAHIVTINEKSLRELGVKWSLADAQQPGAVGNVTTLASDLSVSAATSRVGFNI-G 211

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            ++    E  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV  
Sbjct: 212 RINARLLELELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEF 271

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367
            +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+ SG T
Sbjct: 272 KEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGET 331

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I L G+     +   + +PLL  IP LG+LFR+     E  E+ +  TP LV
Sbjct: 332 IALGGIFSHKNKAAADSVPLLGDIPWLGSLFRHDGKEDERRELVVFITPRLV 383


>gi|188578583|ref|YP_001915512.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188523035|gb|ACD60980.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 766

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 103/232 (44%), Gaps = 38/232 (16%)

Query: 228 KSFAADFGGKFVSE-GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           ++   D  GK   E G  ++  G     +  +++HAL+  T +R L  P++   +   A+
Sbjct: 531 RNIWGDIAGKITGEKGAQWTFLGK----NAASIIHALDEVTNVRLLQTPSVFVRNNAEAT 586

Query: 287 FTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
              G +    + S +TG       +SV   D GV+L   P V   G + L I  EVS P 
Sbjct: 587 LNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSP- 645

Query: 341 IGVNAGDMPS-----------------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
                GD P+                    R+  T   + SG TI+LAGL+ D       
Sbjct: 646 -----GDRPAACTSATATVNAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDGSN 700

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434
           GIP LSK+P++GALF +   N    E+ +  TP +V+ P   R+L+   D Y
Sbjct: 701 GIPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVRNPQEARNLT---DEY 749


>gi|58580480|ref|YP_199496.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622438|ref|YP_449810.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|58425074|gb|AAW74111.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366378|dbj|BAE67536.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 770

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 103/232 (44%), Gaps = 38/232 (16%)

Query: 228 KSFAADFGGKFVSE-GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           ++   D  GK   E G  ++  G     +  +++HAL+  T +R L  P++   +   A+
Sbjct: 535 RNIWGDIAGKITGEKGAQWTFLGK----NAASIIHALDEVTNVRLLQTPSVFVRNNAEAT 590

Query: 287 FTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
              G +    + S +TG       +SV   D GV+L   P V   G + L I  EVS P 
Sbjct: 591 LNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSP- 649

Query: 341 IGVNAGDMPS-----------------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
                GD P+                    R+  T   + SG TI+LAGL+ D       
Sbjct: 650 -----GDRPAACTSATATVNAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDGSN 704

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434
           GIP LSK+P++GALF +   N    E+ +  TP +V+ P   R+L+   D Y
Sbjct: 705 GIPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVRNPQEARNLT---DEY 753


>gi|262045226|ref|ZP_06018252.1| protein transporter HofQ [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037436|gb|EEW38681.1| protein transporter HofQ [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 331

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G +  +  + S P      + ++D      S    F++ G 
Sbjct: 99  QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNI-GK 157

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 158 INGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 217

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GR+ L+++   + P  V+    G+  +   ++ +T VE+ SG T+
Sbjct: 218 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETL 277

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 278 ALGGIFSQKNKTARDSVPLLDDIPVLGRLFRRDGKDNERRELVVFITPRIL 328


>gi|307247528|ref|ZP_07529573.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856031|gb|EFM88189.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 204

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 9/158 (5%)

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           + LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V    RI 
Sbjct: 6   KILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDRIR 64

Query: 330 LRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEG 384
           L +   VS  + G    VN+  +P +  R++ +T E+ +G + +++GLL K DI+ +K+ 
Sbjct: 65  LVLSQSVS-TIAGNYEIVNS-RIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK- 121

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           +P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV
Sbjct: 122 VPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPV 159


>gi|240141999|ref|YP_002966509.1| putative General secretion protein D [Methylobacterium extorquens
           AM1]
 gi|240011943|gb|ACS43168.1| putative General secretion protein D [Methylobacterium extorquens
           AM1]
          Length = 693

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 115/243 (47%), Gaps = 18/243 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVS---EGGDFSVKG 249
           QV ++ TIAEVR +   + G +        G   S  + FG  G+ V+     G+ ++  
Sbjct: 426 QVLIEATIAEVRLNEALRHGVRWYFQAGGLGQGASMGSGFGTSGRSVTGQGSAGEIALTY 485

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--- 306
            L   + +  + ALE  T +  ++ P LT +  Q+A+   G Q    T S+ +   +   
Sbjct: 486 SLGLANAKLAISALESVTDVEIVSSPALTVLDNQTATLKVGEQVPIATRSARSVVNADAP 545

Query: 307 ----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVE 361
               +   D GV+L  TP V + G + L I+ E S+ V    +  D P+ R+R+  +T+ 
Sbjct: 546 LVNDIEMKDTGVILQVTPRVNAGGLVMLDIKQEASDVVPTTTSNLDSPTIRLRQITSTIA 605

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + SG  IVL G+++    +   G+P L  IP+LG    N    ++ TE+ I     +++P
Sbjct: 606 VKSGAEIVLGGIIQRGRHRGAGGVPFLRDIPLLGTALNNIDSGQDRTELVI-----IIRP 660

Query: 422 VAM 424
             M
Sbjct: 661 TVM 663


>gi|290512027|ref|ZP_06551395.1| protein transporter HofQ [Klebsiella sp. 1_1_55]
 gi|289775817|gb|EFD83817.1| protein transporter HofQ [Klebsiella sp. 1_1_55]
          Length = 413

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G +  +  +   P      + ++D      S    F++ G 
Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAEAGGSPGSGQITTLSSDMSVNDASTRAGFNI-GK 239

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 240 INGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 299

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GR+ L+++   + P  V+  + G+  +   ++ +T VE+ SG T+
Sbjct: 300 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETL 359

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 360 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410


>gi|325914232|ref|ZP_08176582.1| General secretion pathway protein D [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539487|gb|EGD11133.1| General secretion pathway protein D [Xanthomonas vesicatoria ATCC
           35937]
          Length = 778

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 37/238 (15%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G ++   ++   D  GK  S G  +S  G     +   ++ AL+  T +R L  P++   
Sbjct: 538 GLANAAGRNIWGDIAGKVGSGGLAWSFLGK----NAAAIISALDTVTNVRLLQTPSVFVR 593

Query: 281 SGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           +   A+   G +    + S +TG       +SV   D GV+L   P V   G + L I  
Sbjct: 594 NNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQ 653

Query: 335 EVSEPVIGVNAGDMPSY-----------------RVRKADTTVELPSGGTIVLAGLLKDD 377
           EVS P      GD P+                    R+  T   + SG TI+LAGL++D 
Sbjct: 654 EVSSP------GDRPTACASATATVNQAACNVDINTRRIKTEAAIQSGDTIMLAGLIQDS 707

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434
                 G+P LSK+P+LG+LF     N+  +E+ +  TP +V+ P+  R+L+   D Y
Sbjct: 708 TSDGSAGVPFLSKLPVLGSLFGQKTQNKRRSEVIVLLTPSIVRNPMEARNLT---DEY 762


>gi|289663703|ref|ZP_06485284.1| general secretion pathway protein D [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 768

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 107/239 (44%), Gaps = 39/239 (16%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           G +S   ++   D  GK V EGG  +S  G     +   +++AL++ T +R L  P++  
Sbjct: 527 GLASAAGRNIWGDIAGK-VGEGGLAWSFLGK----NAAAIINALDKVTNVRLLQTPSVFV 581

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            +   A+   G +    + S +TG       +SV   D GV+L   P V   G + L I 
Sbjct: 582 RNNAEATLNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIV 641

Query: 334 TEVSEPVIGVNAGDMPS-----------------YRVRKADTTVELPSGGTIVLAGLLKD 376
            EVS P      GD P+                    R+  T   + SG TI+LAGL+ D
Sbjct: 642 QEVSSP------GDRPTACQSATATINAAACNVDINTRRVKTEAAVQSGDTIMLAGLIND 695

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434
                  G+P LSK+P++GALF     N    E+ +  TP +V+ P   R+L+   D Y
Sbjct: 696 STTDGSNGVPFLSKLPVVGALFGTKSRNSSRREVIVLITPSIVRNPQEARNLT---DEY 751


>gi|288933223|ref|YP_003437282.1| type IV pilus secretin PilQ [Klebsiella variicola At-22]
 gi|288887952|gb|ADC56270.1| type IV pilus secretin PilQ [Klebsiella variicola At-22]
          Length = 412

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G +  +  +   P      + ++D      S    F++ G 
Sbjct: 180 QVELAAHIVSMSETSLRELGVKWRLAEAGGSPGSGQITTLSSDMSVNDASTRAGFNI-GK 238

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 239 INGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 298

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GR+ L+++   + P  V+  + G+  +   ++ +T VE+ SG T+
Sbjct: 299 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETL 358

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 359 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 409


>gi|319791194|ref|YP_004152834.1| type II and iii secretion system protein [Variovorax paradoxus EPS]
 gi|315593657|gb|ADU34723.1| type II and III secretion system protein [Variovorax paradoxus EPS]
          Length = 532

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 1/154 (0%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LA P L+  SG  A F +GG+     +S+  GA SV    YGV L+  P     G +   
Sbjct: 327 LASPNLSTRSGGEAKFLAGGEIPLPALSTQ-GAGSVEFKPYGVRLNIKPIADGEGNVSGS 385

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           I TEVS     V    +P   +R+ DT   + +G TIVL+GLL  +  +  +G+P L K 
Sbjct: 386 ILTEVSSIDRSVAVQGIPGLLIRRTDTEFNVKAGETIVLSGLLSRESTRSSDGVPGLRKT 445

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           PI+G  FR      +E E+ +  TP +V P   R
Sbjct: 446 PIIGRAFRADNDTDKEQEVVVFITPRVVGPADSR 479


>gi|218691667|ref|YP_002399879.1| outer membrane porin HofQ [Escherichia coli ED1a]
 gi|218429231|emb|CAR10041.1| fimbrial transporter [Escherichia coli ED1a]
          Length = 412

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 106/237 (44%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LF +     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFHHDGKEDERRELVVFITPRLV 409


>gi|170698575|ref|ZP_02889644.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
 gi|170136509|gb|EDT04768.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
          Length = 783

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 28/259 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--HSITGSSSGPSKSFAADFGGKFVS 240
           +++NL +IA   +V L V + EV    L  +G Q   S++    GP     A   G    
Sbjct: 333 RLLNLYDIASP-EVILDVEVLEVNSSDLLNLGIQFPDSVSARMVGP-----AGVAGSMTI 386

Query: 241 EGGDFSVKGVLDRFSFE-------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             GD      L+R SF         VL+  + + + RTLA P +  ++ + AS   G + 
Sbjct: 387 --GDLKH---LNRDSFPLSFPDPLAVLNLRQTSGSTRTLANPRIRVVNHEKASVLIGDKV 441

Query: 294 --LYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGD 347
             +  TV+ ++ A   SV   D G+ L   P +     + +++  EVS  V  V  +A  
Sbjct: 442 PVITSTVNQTSNAITESVNYLDVGLKLEVEPEIHVDNDVTMKVALEVSNIVKEVRSSATG 501

Query: 348 MPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           + +Y++  R A+T + L  G T  LAGL+K+D Q+    +P L +IP+LG LF N+R   
Sbjct: 502 LLAYQIGTRNANTVLRLHEGETQALAGLIKNDTQESGTHVPGLGRIPVLGRLFSNNRDTA 561

Query: 406 EETEIFIAATPFLVKPVAM 424
             +EI +  TP + + +AM
Sbjct: 562 TRSEIVLLITPHIARSLAM 580


>gi|291619222|ref|YP_003521964.1| HofQ [Pantoea ananatis LMG 20103]
 gi|291154252|gb|ADD78836.1| HofQ [Pantoea ananatis LMG 20103]
          Length = 413

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 5/186 (2%)

Query: 244 DFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           D SV   L R      +  L ALE+   +  +A P L     Q+AS   G +  Y+  + 
Sbjct: 225 DVSVGVTLSRIGGKLLDLELSALEQENQVEIIASPRLFTSHQQTASIKQGTEIPYEVSAG 284

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DT 358
           ++GATS+   +  + +  TP VL  GRI L+I+   + P   V  GD     + K   +T
Sbjct: 285 NSGATSIEFKEAVLGMEVTPAVLGNGRIQLKIRISQNVPGRAVQTGDSQVLSIDKQEIET 344

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V +  G T+ L G+      + +  +PLL  +P++G+LFR     + + E+ I  TP L
Sbjct: 345 QVTVSDGQTLALGGIFHQQRTRGQRQVPLLGNLPVVGSLFRQHAEEQRKRELVIFMTPRL 404

Query: 419 VKPVAM 424
           V+  A+
Sbjct: 405 VREAAL 410


>gi|222083138|ref|YP_002542503.1| general secretion pathway protein D [Agrobacterium radiobacter K84]
 gi|221727817|gb|ACM30906.1| general secretion pathway protein D [Agrobacterium radiobacter K84]
          Length = 714

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 13/181 (7%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTG-ATSVTTHDY 312
           L+AL   T +  ++ PTL A++ Q A+   G Q          T SS+T   +S+   D 
Sbjct: 505 LNALSSITNVNIVSAPTLMALNNQKATLQVGDQVPIVTQQSASTTSSNTAIVSSIDLKDT 564

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLA 371
           GV+L   P V S GR+ L IQ EVS  V    +G D P+ + RK  T V +    ++ L 
Sbjct: 565 GVILTVLPRVNSSGRVMLDIQQEVSNVVKTTTSGIDSPTIQQRKLSTKVIVDDNESVALG 624

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL++         +P+L K+PI G  F+N      +TE+ I      +KP  +RD+ +  
Sbjct: 625 GLIQQSNTLNHSQVPILGKMPIFGNAFKNKEDTINKTELII-----FIKPRIVRDVRQAR 679

Query: 432 D 432
           D
Sbjct: 680 D 680


>gi|283781400|ref|YP_003372155.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283439853|gb|ADB18295.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 854

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 107/240 (44%), Gaps = 13/240 (5%)

Query: 227 SKSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           S S   D     +SEGG   +K G LD  S    + ALE       +A P L  ++ Q A
Sbjct: 376 SGSPLTDLANIDLSEGG---LKLGFLD-ASLAVFIDALETVGDTNVIASPRLMCLNKQRA 431

Query: 286 SFTSGGQ--HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               G Q  ++  TV+ ++   SV   D G +L   P + + G I L +  E+S   + +
Sbjct: 432 EIQIGEQLGYVSTTVTENSATQSVNFLDVGTLLRLRPNIANDGLIRLEVHPELSTGTVSI 491

Query: 344 NAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             G  +P+  V +  T V    G T++L GL++ D+      IP L  +P++G  FR   
Sbjct: 492 EQGLTIPNKTVTQVTTNVMCADGCTVILGGLIRQDLTNNTSQIPFLGSLPLVGPAFRQKT 551

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP-----DDHYSVEDDAKAFFFNRVNKIYGPKEA 457
             +E TEI +  TP +V    + +  R       +H SV  D  + F  R    Y  ++A
Sbjct: 552 ETQERTEIIVLLTPRIVSEPMLGEEGRKYGNSFTEHQSVYADKMSPFGKRSTGQYHLRKA 611


>gi|191167908|ref|ZP_03029712.1| protein transporter HofQ [Escherichia coli B7A]
 gi|190902081|gb|EDV61826.1| protein transporter HofQ [Escherichia coli B7A]
          Length = 412

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G + +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGVVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|163783780|ref|ZP_02178765.1| hypothetical protein HG1285_09976 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880969|gb|EDP74488.1| hypothetical protein HG1285_09976 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 550

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 120/243 (49%), Gaps = 22/243 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFS------- 246
           QV ++  I EVR+++++++G   S   S++   +S++   G    V + G  +       
Sbjct: 310 QVKIEARILEVRKEVVRELGINWSALLSNAKVQQSWSGGAGVNLGVGQAGAITPSLSATP 369

Query: 247 --------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                    KG L+  +    L A ER   I++LA+PT+  I+GQ+A    G +  Y+T 
Sbjct: 370 GGILTFTYAKGALNALNLR--LSAFERLGKIKSLAKPTIVTINGQNAVIKQGQEIPYQTA 427

Query: 299 SSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
             + G++  S+   +  + L+  P +   GRI L +  E+ + + GV     P+   ++ 
Sbjct: 428 VIAGGSSVPSIQFKEAVLELNVLPIISPDGRILLDM--ELKQEIPGVQTPIGPTIIKKQV 485

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V + +G TIV+ G++    +  KEG+  L ++PIL  LF     + ++ E+ I  TP
Sbjct: 486 STKVIVNNGDTIVIGGIIDSLNRNTKEGVAGLVRVPILKWLFGQESKHIQDIELLIFITP 545

Query: 417 FLV 419
            ++
Sbjct: 546 SII 548


>gi|54302290|ref|YP_132283.1| Flp pilus assembly protein [Photobacterium profundum SS9]
 gi|46915712|emb|CAG22483.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           SS9]
          Length = 296

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 117/261 (44%), Gaps = 31/261 (11%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           ++V   + + IS+  NK  ++++P   + + V +P  AD+++     +Y+ GK  G  NV
Sbjct: 28  TNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNKIYVLGKQFGTTNV 87

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I+     + +  LD+ +  D+  L+  L  F+ +  I V    + +VL G V +      
Sbjct: 88  IIWDSRDQLITVLDVEVTHDLNALKSKLYEFMPNEKISVYTSQNKLVLSGEVSSADKIAT 147

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           AVE++ TF           ++  +++NL+ + G  QV L+VT+AEV+R ++++   +  +
Sbjct: 148 AVEIANTF-----------TADGEIINLMAVGGSHQVMLEVTVAEVQRSLVREFDSKF-V 195

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSV--------------KGVLDRFSFETVLHALER 265
               SG      A+ G    S  G                   G+   F     L A   
Sbjct: 196 FAHQSGNWTWGGANGGASVPSNVGIIDPIIDAAISNPLSIDDNGLFASFLSSNTLFAAAF 255

Query: 266 ATA-----IRTLAEPTLTAIS 281
             A      + LAEPTLTAIS
Sbjct: 256 DIAKTNGLAKVLAEPTLTAIS 276


>gi|238754119|ref|ZP_04615477.1| Protein transporter HofQ [Yersinia ruckeri ATCC 29473]
 gi|238707615|gb|EEP99974.1| Protein transporter HofQ [Yersinia ruckeri ATCC 29473]
          Length = 422

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 5/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L   I  +  + L ++G +  I    SG S     +F      +    +    + R
Sbjct: 190 QQVQLAAHIVTISSESLHELGVRWGIPARDSGGSALRINNFNVGLPIQNSAITAGFNIAR 249

Query: 254 FSFETV---LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            S + +   L ALE+   +  +A P LT    Q+AS   G    Y   S   G T+V   
Sbjct: 250 ISGQLLDLELSALEQENQVEIIASPRLTTSHQQTASIKQGTDIPYSVSSGKNGGTTVEFK 309

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTI 368
           +  + +  TP +L  G+I L+++   + P + +  G+  S  + K +  T + +  G TI
Sbjct: 310 EAVLGMEVTPRILGAGKITLKLKISQNMPGMAIKRGENESLAIDKQEIKTQITVNDGETI 369

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +    +    +P+LS IP+LG LF+ +   +   E+ I  TP L+
Sbjct: 370 VLGGIFQQKNSRGANKVPVLSDIPLLGHLFKQTVNAKSRRELVIFITPRLI 420


>gi|237728710|ref|ZP_04559191.1| type II secretion system protein [Citrobacter sp. 30_2]
 gi|226909332|gb|EEH95250.1| type II secretion system protein [Citrobacter sp. 30_2]
          Length = 415

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G + S+  +      G   + A+D      +    F++  +
Sbjct: 183 QVELAAHIVTINEKSLRELGVKWSLADAQQSGAVGNVTTLASDLSVATATSRVGFNIGRI 242

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +    ++   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 243 NGRLLELELSALEQKQQ-LDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 301

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+ SG TI
Sbjct: 302 EAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETI 361

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +   + +PLL  IP LG+LFR+     E  E+ +  TP LV
Sbjct: 362 ALGGIFSHKNKSAADSVPLLGDIPWLGSLFRHDGKEDERRELVVFITPRLV 412


>gi|262163787|ref|ZP_06031527.1| S-protein secretion component D [Vibrio mimicus VM223]
 gi|262027767|gb|EEY46432.1| S-protein secretion component D [Vibrio mimicus VM223]
          Length = 713

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 105/232 (45%), Gaps = 22/232 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           QV ++ TIAE+  D  +Q G    IT G+ +G +K  A         + G  S+ GV   
Sbjct: 470 QVLIQATIAEINIDDAQQFGVDFDITSGTITGGTKGLAG-------FDNGVLSLTGVFGD 522

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTH 310
            +      A  +    + L+ P + A++ ++A  T G Q    T   S G   + + TT+
Sbjct: 523 VTMG--FRAALKTGKAQVLSSPRIIAMNQEAARITVGDQIQVVTGEVSGGGDDSKATTTY 580

Query: 311 DY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
            Y   GV L   PT+   G + L I  EVS      N G       R   T +   SG T
Sbjct: 581 KYVDTGVTLDIIPTINQNGLVELEISQEVS------NKGTGTDINKRSLQTKLLADSGDT 634

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + + GL+K DI +    +PLL  IP LG LF+     ++  E+ +  TP+++
Sbjct: 635 VFMGGLIKQDIGETDNRVPLLGDIPYLGNLFKYKSQTQKSVELVLLITPYVI 686


>gi|308188407|ref|YP_003932538.1| Type IV pilus biogenesis and competence protein pilQ precursor
           [Pantoea vagans C9-1]
 gi|308058917|gb|ADO11089.1| Type IV pilus biogenesis and competence protein pilQ precursor
           [Pantoea vagans C9-1]
          Length = 423

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 2/167 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   I  +A P L     Q+AS   G +  Y+  + ++GATS+   +  + +  T
Sbjct: 254 LSALEQENQIEIIASPRLFTSHQQTASIKQGTEIPYEVSAGNSGATSIEFKEAVLGMEVT 313

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           PT+   GRI L+I    + P   +  G  D+ S   ++ +T V +  G T+ L G+ +  
Sbjct: 314 PTISGNGRIQLKIHISQNMPGRSIRTGDSDILSIDKQEIETQVTVSDGQTLALGGIFQQQ 373

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
               +  +PLL  +P++G LFR     R++ E+ I  TP LV+  A+
Sbjct: 374 RSHGENKVPLLGNVPLIGGLFRQQSEQRKKRELVIFITPRLVREAAL 420


>gi|296105083|ref|YP_003615229.1| outer membrane porin HofQ [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295059542|gb|ADF64280.1| outer membrane porin HofQ [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 213

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 12/196 (6%)

Query: 236 GKFVSEGGDFSVKGVLDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSA 285
           G+  + G D SV        F          +  L ALE+   +  +A P L A   Q A
Sbjct: 15  GQMTTLGSDLSVASATSHVGFNIGRINGRLLDLELSALEQKQQVDIIASPRLLASHMQPA 74

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGV 343
           S   G +  Y+  S  +GATSV   +  + +  TP VL  GR+ L++    + P  V+  
Sbjct: 75  SIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPVVLPGGRVRLKLHISENMPGQVLQQ 134

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
             G+  +   ++ +T VE+ SG T+ L G+     +   + +P L KIP LG LFR+   
Sbjct: 135 ADGETLAIDKQEIETQVEVKSGETLALGGIFSQKNKTGSDSVPGLGKIPWLGQLFRHDGK 194

Query: 404 NREETEIFIAATPFLV 419
           + E  E+ +  TP LV
Sbjct: 195 DNERRELVVFITPRLV 210


>gi|119477881|ref|ZP_01618004.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2143]
 gi|119449042|gb|EAW30283.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2143]
          Length = 689

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 21/231 (9%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
            F+ +  GSS       A   GG   + G    +  + D  SF  V++AL++ +    L+
Sbjct: 409 AFETNNNGSSVDARGGIAEAIGG---AAGQVLGIGRLDDDLSFNVVVNALQQNSEANILS 465

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS-SSTGATS---------VTTHDYGVVLHFTPTVL 323
            P+L  +  + ASF  G    + T S ++TG++S         V   + G+ L  TP + 
Sbjct: 466 TPSLLTLDNEEASFVVGQSIPFVTGSYTATGSSSSNPDNPFQTVERENVGITLRVTPQIN 525

Query: 324 SPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
               + L I  EVS  VIG +      P    RK +TT+   +G TIVL GL++D+I + 
Sbjct: 526 EGDSLILAISQEVSN-VIGTSTILNSNPITSERKIETTILADNGQTIVLGGLIEDNITES 584

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
            + +P+L  IP LG LFR++  +  +  + I    FL +P  +RD  + D+
Sbjct: 585 IQKVPILGDIPFLGRLFRSTSTSVGKKNLLI----FL-RPTIVRDKRQMDN 630


>gi|53804514|ref|YP_113593.1| general secretion pathway protein D [Methylococcus capsulatus str.
           Bath]
 gi|53758275|gb|AAU92566.1| general secretion pathway protein D [Methylococcus capsulatus str.
           Bath]
          Length = 751

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 13/239 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS-----GPSKSFAADFGGKFVSEGGDFSVKG 249
           QV +  TI E+      Q G +  I+  SS      P  +   DF     S  G FS   
Sbjct: 477 QVLIDATIVEISLKNDLQYGLKWLISSGSSTEALGSPLAALVKDFINGAASASGGFSYAL 536

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSV 307
           + +  + + +L+ L +   +  ++ P+L  ++ Q A    G Q   L  T +S+T  T+ 
Sbjct: 537 IANGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVLTGTTASATIGTTQ 596

Query: 308 TTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMP-SYRVRKADTTVE 361
                    GV L   P V S G + L I   +S P  + V +G     +  R+  + V 
Sbjct: 597 FNQFQQQQSGVTLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKTFQFANREIQSVVA 656

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P+G T+ L GL+ D   + + G+P L++IP++G +F ++    E TE+ +  TP +V+
Sbjct: 657 VPNGQTLALGGLISDKRSETQTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVVE 715


>gi|332750832|gb|EGJ81239.1| transport protein hofQ [Shigella flexneri 2747-71]
 gi|332763627|gb|EGJ93866.1| protein involved in utilization of DNA as a carbon source [Shigella
           flexneri 2930-71]
 gi|332997370|gb|EGK16986.1| transport protein hofQ [Shigella flexneri K-218]
 gi|333012492|gb|EGK31873.1| transport protein hofQ [Shigella flexneri K-304]
          Length = 386

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 106/237 (44%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS     +  Y+  S  +GA
Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQESEIPYQVSSGESGA 266

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|304397810|ref|ZP_07379686.1| type IV pilus secretin PilQ [Pantoea sp. aB]
 gi|304354521|gb|EFM18892.1| type IV pilus secretin PilQ [Pantoea sp. aB]
          Length = 423

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 2/167 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   I  +A P L     Q+AS   G +  Y+  + ++GATS+   +  + +  T
Sbjct: 254 LSALEQENQIEIIASPRLFTSHQQTASIKQGTEIPYEVSAGNSGATSIEFKEAVLGMEVT 313

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           PT+   GRI L+I+   + P   +  GD  + S   ++ +T V +  G T+ L G+ +  
Sbjct: 314 PTLSGNGRIQLKIRISQNMPGRSIRTGDSNILSIDKQEIETQVTVSDGQTLALGGIFQQQ 373

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
             + +  +PLL  +P++G LFR     R++ E+ I  TP LV+  A+
Sbjct: 374 RSRGENKVPLLGNVPLIGGLFRQQSEQRKKRELVIFITPRLVREAAL 420


>gi|30065325|ref|NP_839496.1| outer membrane porin HofQ [Shigella flexneri 2a str. 2457T]
 gi|56480325|ref|NP_709164.2| outer membrane porin HofQ [Shigella flexneri 2a str. 301]
 gi|30043587|gb|AAP19307.1| putative transport portein [Shigella flexneri 2a str. 2457T]
 gi|56383876|gb|AAN44871.2| putative transport portein [Shigella flexneri 2a str. 301]
 gi|281602739|gb|ADA75723.1| putative transport protein [Shigella flexneri 2002017]
 gi|313647313|gb|EFS11765.1| transport protein hofQ [Shigella flexneri 2a str. 2457T]
 gi|332749511|gb|EGJ79928.1| transport protein hofQ [Shigella flexneri K-671]
          Length = 412

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 106/237 (44%), Gaps = 19/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +    L+++G + ++  +         A   G+  + G D SV       
Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232

Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            F          +  L ALE+   +  +A P L A   Q AS     +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQESEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|17547833|ref|NP_521235.1| general secretion pathway protein D [Ralstonia solanacearum
           GMI1000]
 gi|17430138|emb|CAD16823.1| probable general secretory pathway d transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 805

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 22/218 (10%)

Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291
            GG+F   GV ++ +    +L AL    ++  L+ P L  +         GQ+   T+G 
Sbjct: 515 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 571

Query: 292 QHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347
              Y    SS   T   T    D G+ L   P +   G + ++I  E S  V G  NA  
Sbjct: 572 ---YAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGMVKMQIFQESSAVVNGTQNATQ 628

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P L  IP+LGALFR+    R++
Sbjct: 629 GPTTNVRSIETNVIANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPVLGALFRSESKTRKK 688

Query: 408 TEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFF 444
           T + +   P++++   A   LS  D+ Y+   DA+  F
Sbjct: 689 TNLLVFLRPYILRTAEATGALS--DNRYNYMRDAQQGF 724


>gi|90424504|ref|YP_532874.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB18]
 gi|90106518|gb|ABD88555.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB18]
          Length = 774

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 125/270 (46%), Gaps = 33/270 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSK--SFAADFGGKFVSEGGDFSVKGVL 251
           QV +  TIAEV      Q G Q  +T    G P+   S         +S   D  +   +
Sbjct: 489 QVAIDATIAEVTLTDDLQFGVQTYLTSRDFGMPADRGSLGTASSSALISAASDVVLNRAI 548

Query: 252 DRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             F+F        + +L+AL   T ++ L+ P+L  I  Q A+   G +   +T S++  
Sbjct: 549 PGFNFLVGSGSSPKAILNALHAITEVKVLSNPSLVVIDNQVATLQVGDEIPIQTGSATVL 608

Query: 304 ATSVT---THDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348
           ++S T   T DY   G++L   P + + G + L I+ E+S PV   +             
Sbjct: 609 SSSNTIANTTDYRRTGILLQVVPRINANGNVRLEIEQEISNPVASSSTSSSSSTSTNSLT 668

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+   RK  ++V + SG T++LAGL+ D   + + GIP L ++P +G +F  +    + T
Sbjct: 669 PTVSTRKVKSSVAVASGQTVLLAGLISDTQNKTRSGIPGLDQLPGVGDVFSQTEKIMKRT 728

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           E+ I      ++P  +RD S  D H+  E+
Sbjct: 729 ELII-----FIRPQIIRDGS--DAHFVAEE 751


>gi|148262762|ref|YP_001229468.1| general secretion pathway protein D [Geobacter uraniireducens Rf4]
 gi|146396262|gb|ABQ24895.1| general secretion pathway protein D [Geobacter uraniireducens Rf4]
          Length = 641

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 23/246 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEGGDFSVKG 249
           QV ++  IAEV    LK +G Q  + G +S  + + A      D     ++   +    G
Sbjct: 356 QVFVEAVIAEVSLSKLKDLGVQWGVLGGASNGTATAAGLYDPQDTFTTLLTALANLKSAG 415

Query: 250 VL------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---TVSS 300
           +          +F  VL AL+   A+  L+ PT+     + A    G    +K   T+S+
Sbjct: 416 ITIPDLTGTALNFSAVLRALDSLGAVNVLSTPTIMTSDNKEAEIFVGENVPFKGNVTISN 475

Query: 301 STGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVR 354
           +T  +  S+   D G+ L  TP +     + L I  E+S      V G  A D+ + + R
Sbjct: 476 TTTPSFQSIERKDTGITLKITPQISEGEYVKLDIYQEISAISNTTVSG--ASDLITTK-R 532

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            A T+V +    T+V+ GL++D  Q+    IPLL  IP LG LF+     R++T + I  
Sbjct: 533 SAKTSVAVKDKDTMVIGGLIQDREQETVNKIPLLGDIPFLGWLFKFKNTTRQKTNLLIVL 592

Query: 415 TPFLVK 420
           TP +V+
Sbjct: 593 TPRIVR 598


>gi|220921783|ref|YP_002497084.1| general secretion pathway protein D [Methylobacterium nodulans ORS
           2060]
 gi|219946389|gb|ACL56781.1| general secretion pathway protein D [Methylobacterium nodulans ORS
           2060]
          Length = 784

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 124/255 (48%), Gaps = 19/255 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV + VTIAEVR +   + G Q+ +  S  G  K+    FG    +  G  +V      F
Sbjct: 512 QVAVNVTIAEVRLNDQLKYGVQYFLDSSRIGLGKN-KGSFGLVSAAATGATNVLKPGAGF 570

Query: 255 SF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGG-------QHLYKTVS 299
           +F        + V+ AL+  T ++ L+ P+L  +  Q A+   G        Q      +
Sbjct: 571 NFLVGGYSGPDVVISALDGFTDVKVLSSPSLVVLENQPATLQVGDSVPITTRQAQSIDYA 630

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           ++     V   D G++L+  P +     + ++I+ E+S  V+G +    P+   R+  +T
Sbjct: 631 NAPLINQVEFRDTGIILNVIPRIGQNDAVTMQIEQEISA-VVGGSDTLTPTISKRRVAST 689

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + + +G T++LAGL+ D  Q+ ++GIP L+++P +G LF ++    E TE+ +   P +V
Sbjct: 690 ISVANGQTVLLAGLISDKHQRERDGIPFLNRLPQIGQLFSSTDNGAERTELVVFIRPVVV 749

Query: 420 KPVAMRDLSRPDDHY 434
           +    RD  R  + Y
Sbjct: 750 R--NGRDAQRVAEDY 762


>gi|85860072|ref|YP_462274.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
 gi|85723163|gb|ABC78106.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
          Length = 601

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 5/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGV 314
           ++ A++  T I  L++P L  +  + A    G    Y T   +T      +S    D GV
Sbjct: 404 MIQAIKSDTDIHILSKPQLLTMDNEEAQIHVGKNVPYATRKETTTTNLDYSSYEYRDVGV 463

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L  TP + S G + ++I  EVS+ V   +   +P+   R  +TTV +    T+V+ G++
Sbjct: 464 SLKITPHINSEGFVRMKINQEVSQ-VTEDSPTGLPTTNKRAVNTTVTIKDSETVVIGGMI 522

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            D  Q     +PLL  IP+LG LF++   NRE+T +++  TP +++
Sbjct: 523 GDSTQLGTYKVPLLGDIPVLGWLFKSRSSNREKTNLYVFITPRVIR 568


>gi|253996449|ref|YP_003048513.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
 gi|253983128|gb|ACT47986.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
          Length = 659

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 124/244 (50%), Gaps = 14/244 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKF-VSEGGDF-S 246
           E +V L+V + E+ R  L+ IG ++    S+       S   + +  G+  ++E  +F S
Sbjct: 336 EPEVMLEVEVMEINRRSLENIGVRYPSQVSVGVQGKTSSNGVSTNTPGRLSLAELKNFNS 395

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGAT 305
             GV         L+ L + T    LA P +   + + A    G +  ++ +V++STG  
Sbjct: 396 GLGVFTISDPVLALNLLHQDTDTNLLANPQIRVKNREKAKIHVGDKIPVFTSVANSTGFV 455

Query: 306 SVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTT 359
           S T +  + G+ L   PT+L   ++ +++  EVS     +  + G + +Y +  R A+TT
Sbjct: 456 SQTVNYLEVGIKLDVEPTILLQDQVNIKVGLEVSNITDQVKTDTGVL-AYTIGSRNANTT 514

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++L +G T +LAGL +DD Q +   +P LS +P +G LF +   ++ + EI +  TP ++
Sbjct: 515 LQLKNGETQILAGLFRDDGQNISNKVPGLSSLPFIGRLFTDKNNDKRKNEIVLLITPRIL 574

Query: 420 KPVA 423
             +A
Sbjct: 575 HNIA 578


>gi|149926612|ref|ZP_01914872.1| pili assembly protein PilQ [Limnobacter sp. MED105]
 gi|149824541|gb|EDM83757.1| pili assembly protein PilQ [Limnobacter sp. MED105]
          Length = 681

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE    +RT++ P +   + + A    G +  Y+ +++S+GAT+    +  + L  T
Sbjct: 522 LRALELENKVRTVSNPRVITSNKEPALIEQGTEIPYQ-IATSSGATATEFKEANLKLAVT 580

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++  IG+   + P+   R+  T V +  GGT+VL G+ ++D  
Sbjct: 581 PQIAPDGTVLLDV--DVAKDSIGIETSNGPAIDTRRVKTKVLVSDGGTVVLGGIFEEDDN 638

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L +  P L  IP LG LFR    +R   E+ I  TP ++
Sbjct: 639 VLNDKTPFLGDIPGLGVLFRGKNESRRRAELLIFLTPVVL 678


>gi|220931453|ref|YP_002508361.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
 gi|219992763|gb|ACL69366.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
          Length = 881

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 10/177 (5%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---------TVSSSTGA 304
            ++   L  LE       LA P L  ++G++A    G +   K              + A
Sbjct: 408 ITWPEYLRFLEEEGQANMLANPRLLTLNGENARLLIGDKVPVKIEETSGSSEESEGESNA 467

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELP 363
            S    D G+ L FTP +   G I + +  EVS     +  G+ +P  + R+A T + L 
Sbjct: 468 VSYEYIDVGISLEFTPWITEDGYIIMDVAPEVSSLGSPMGGGESIPPIKTREARTKIRLK 527

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            G T  + GL+++D  +    +PLL  IP+LG LFR S+ ++ +TE+ I  TP +VK
Sbjct: 528 DGQTFAIGGLIREDELESIAKVPLLGDIPLLGTLFRRSQTDKVKTEVVIFITPHIVK 584


>gi|239995641|ref|ZP_04716165.1| general secretion pathway protein D [Alteromonas macleodii ATCC
           27126]
          Length = 683

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 10/185 (5%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G +  + GV++   +  V+ A+   T    LA P LT +  + A F  G Q +     ++
Sbjct: 434 GANGLIAGVIEN-GWGAVVQAVSTDTNSNILATPHLTTMDNEEAFFIVG-QEVPIITGTT 491

Query: 302 TGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           TGA       +V   + G+ L  TP +     + L I+ EVS  V G  + D+ S   R+
Sbjct: 492 TGANNSNPFQTVDRQEVGIKLKVTPQINEGDAVQLLIEQEVSS-VSGATSVDI-SINKRE 549

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             TTV +  GGTIVL GL+ +D+Q+ +  +PLL  IPILG LF+++  ++ +  + +   
Sbjct: 550 IKTTVIVDDGGTIVLGGLIDEDVQESESKVPLLGDIPILGHLFKSTSTSKRKRNLMVFLK 609

Query: 416 PFLVK 420
           P +V+
Sbjct: 610 PTIVR 614


>gi|299065327|emb|CBJ36496.1| General Secretory Pathway protein D, type II secretion system
           [Ralstonia solanacearum CMR15]
          Length = 805

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 102/218 (46%), Gaps = 22/218 (10%)

Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291
            GG+F   GV ++ +    +L AL    ++  L+ P L  +         GQ+   T+G 
Sbjct: 515 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 571

Query: 292 QHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347
              Y    SS   T   T    D G+ L   P +   G + ++I  E S  V G  NA  
Sbjct: 572 ---YAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGTVKMQIFQESSAVVNGTQNATQ 628

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P L  IP+LGALFR+    R++
Sbjct: 629 GPTTNVRSIETNVIANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPVLGALFRSESKTRKK 688

Query: 408 TEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFF 444
           T + +   P++++   A   LS  D+ Y    DA+  F
Sbjct: 689 TNLLVFLRPYILRTAEATGALS--DNRYGYMRDAQQGF 724


>gi|119943890|ref|YP_941570.1| general secretion pathway protein D [Psychromonas ingrahamii 37]
 gi|119862494|gb|ABM01971.1| general secretion pathway protein D [Psychromonas ingrahamii 37]
          Length = 662

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 18/173 (10%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD--- 311
           ++  VL AL  AT    LA P+LT +  Q ASF  G +     V   TG+TS  T+D   
Sbjct: 424 NWGVVLQALSSATTSNILATPSLTTLDNQEASFIVGDE-----VPVLTGSTSSATNDNPF 478

Query: 312 -------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
                   G+ L  TP +     + + I+ EVS+     +A D+  +  R   TTV   S
Sbjct: 479 QTIERKEIGIKLKVTPQINEGDSVQMIIEQEVSDIKNDTSAVDVI-FSTRSVKTTVLAKS 537

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE--IFIAAT 415
           G TIV+ GL+ + +++  + +PLL  IP+LG LFR+++ + E+    IF+ AT
Sbjct: 538 GETIVIGGLIDETVKETVQKVPLLGDIPLLGFLFRSTQSSTEKRNLMIFLRAT 590


>gi|294638088|ref|ZP_06716347.1| protein transport protein HofQ [Edwardsiella tarda ATCC 23685]
 gi|291088796|gb|EFE21357.1| protein transport protein HofQ [Edwardsiella tarda ATCC 23685]
          Length = 400

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 2/167 (1%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +    L ALER   +  +A P L A  GQ AS   G +  Y   +   G +++   +  +
Sbjct: 231 ALAMTLAALERQDKVAIIASPQLMAAHGQMASIKQGSELPYAVSNGERGVSTMEFKEAVL 290

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAG 372
            +  TP VL+  RI L +Q   + P   V  GD  +  + K +  T V LP+G T VL G
Sbjct: 291 GMSVTPRVLADERIELALQITQNMPGRLVRQGDSEALAIDKQEISTQVTLPNGDTAVLGG 350

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +   Q   EG P L+ IP+LG L R      E  E+ I  TP L+
Sbjct: 351 IFQYQRQDGYEGFPWLASIPLLGHLLRRDSQRSERRELVIFITPTLL 397


>gi|91775689|ref|YP_545445.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91709676|gb|ABE49604.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 653

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 26/247 (10%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFV 239
            E +V L+V + E+ R  L+ IG ++            ++ G+++        +    F 
Sbjct: 336 AEPEVMLEVEVLEINRRSLENIGIRYPTNVSLDVQGRDTVNGTTTLTPGKLTINELKNFN 395

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTV 298
           S  G FS+   +        L+ L++ T    LA P +   + + A    G +  +  +V
Sbjct: 396 SNLGVFSISDPV------LALNLLQQDTDTNLLANPHIRVKNREKAKIHVGDRIPVLTSV 449

Query: 299 SSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV- 353
           ++STG  S T +  + GV L   PT+L    + ++I  EVS     +  ++G + +Y + 
Sbjct: 450 ANSTGFISQTVNYIEVGVKLDVEPTILLRDEVSIKIGLEVSNQTDRMETSSGTV-TYTIG 508

Query: 354 -RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A T + L  G T +LAGL+++D Q++  G+P LSK+P++G LF N+  +  + EI +
Sbjct: 509 TRNASTILRLKDGETQILAGLMRNDEQKITNGVPGLSKLPLIGKLFNNNNNDLSKKEIAL 568

Query: 413 AATPFLV 419
             TP ++
Sbjct: 569 FITPRII 575


>gi|86151899|ref|ZP_01070112.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|148925643|ref|ZP_01809331.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|315124908|ref|YP_004066912.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841007|gb|EAQ58256.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|145845653|gb|EDK22744.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|315018630|gb|ADT66723.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 470

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   SS G  + T
Sbjct: 267 GLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326

Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352
           T     ++Y    G++L+  P +   G+I LRI   +S+   P       +     P   
Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    N + TEI  
Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVF 446

Query: 413 AATPFLVKPV---AMRDL 427
             TP +V  V   +++DL
Sbjct: 447 IITPSIVDSVNAPSLKDL 464


>gi|312143767|ref|YP_003995213.1| type II and III secretion system protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904418|gb|ADQ14859.1| type II and III secretion system protein [Halanaerobium sp.
           'sapolanicus']
          Length = 629

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 4/167 (2%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY- 312
            ++     AL+  +  +TLA P L  ++G++A+     +  Y+ V  +   +   T +Y 
Sbjct: 364 LTWPEFFRALDETSDSKTLANPRLMTLNGETANMAILDEVPYRVVEINDDGSRTETFEYA 423

Query: 313 --GVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             GV + FTP +     I L I+  VS    +   AG  P+ R R+ +T + L  G T+ 
Sbjct: 424 EAGVDIEFTPWITENKEIELSIKPRVSSFTQVTTAAGAPPALRSREVETMLRLNDGETLA 483

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           + GL++ D   +   IPLL  IPI+G LF++ R      E+ I  TP
Sbjct: 484 IGGLIQTDQDGVITKIPLLGDIPIIGELFKSRRNEGSHNELIIFVTP 530


>gi|254558682|ref|YP_003065777.1| General secretion pathway protein D [Methylobacterium extorquens
           DM4]
 gi|254265960|emb|CAX21710.1| putative General secretion pathway protein D [Methylobacterium
           extorquens DM4]
          Length = 794

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 131/283 (46%), Gaps = 32/283 (11%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           E + + +  + RNQY      K++ +L    A   QV L+  IAEV  +   Q G Q  +
Sbjct: 473 EANNSLVISATRNQY-----DKILRILGRLDAMPTQVLLETVIAEVTLNNELQFGVQWFL 527

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD-------FSVKGV------LDRFSFETVLHALERA 266
              +SG   + A     + V++G          +V+GV      L+   F  VL+AL+  
Sbjct: 528 --KNSGSRFNLAQADTNRSVAQGTSGTDALIKAAVRGVPGFNYLLNASDFNVVLNALQGV 585

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATS------VTTHDYGVVLHFT 319
           T +  ++ P +T +  ++A    G Q  + +    S  A        +   D GV+L  T
Sbjct: 586 TRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVILSVT 645

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P V   G + L I  EVS+ V+     ++  P+ R R+  T+V +  G ++ + G++++ 
Sbjct: 646 PRVNKNGLVVLDINQEVSD-VVKTTTSEINSPTIRQRRVATSVAVNDGHSLAIGGMVQEK 704

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            Q   E +P+L  +PI+G  FRN    R  TE+ +   P +++
Sbjct: 705 AQITNESVPVLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIR 747


>gi|205356095|ref|ZP_03222862.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|205345938|gb|EDZ32574.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni CG8421]
          Length = 470

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   SS G  + T
Sbjct: 267 GLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326

Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352
           T     ++Y    G++L+  P +   G+I LRI   +S+   P       +     P   
Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    N + TEI  
Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVF 446

Query: 413 AATPFLVKPV---AMRDL 427
             TP +V  V   +++DL
Sbjct: 447 IITPSIVDSVNAPSLKDL 464


>gi|86153104|ref|ZP_01071309.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613593|ref|YP_001001123.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167006016|ref|ZP_02271774.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85843989|gb|EAQ61199.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249586|gb|EAQ72545.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|315058928|gb|ADT73257.1| Type II secretion outermembrane pore forming protein (PulD)
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 470

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   SS G  + T
Sbjct: 267 GLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326

Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352
           T     ++Y    G++L+  P +   G+I LRI   +S+   P       +     P   
Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    N + TEI  
Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVF 446

Query: 413 AATPFLVKPV---AMRDL 427
             TP +V  V   +++DL
Sbjct: 447 IITPSIVDSVNAPSLKDL 464


>gi|187930465|ref|YP_001900952.1| general secretion pathway protein D [Ralstonia pickettii 12J]
 gi|187727355|gb|ACD28520.1| general secretion pathway protein D [Ralstonia pickettii 12J]
          Length = 807

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 18/216 (8%)

Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
            GG+F   GV +R S    +L AL    ++  L+ P L  +  + A    G Q++  T  
Sbjct: 515 NGGNF---GVFNRGSGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIG-QNVPITTG 570

Query: 300 S---STGATSVTT------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMP 349
           S   + GA SVT        D G+ L   P +   G + ++I  E S  V G  NA   P
Sbjct: 571 SYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQESSAVVPGTQNATQGP 630

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +  VR  +T V    G  +VL GLL+D+ Q  ++ +P L  IPILGALFR+    R +T 
Sbjct: 631 TTNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLGDIPILGALFRSENKTRVKTN 690

Query: 410 IFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFF 444
           + +   P +++   A   LS  D+ Y+   D +  F
Sbjct: 691 LLVFLRPIILRTADATGTLS--DNRYNYMRDTQQGF 724


>gi|283956850|ref|ZP_06374323.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791576|gb|EFC30372.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 470

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   SS G  + T
Sbjct: 267 GLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326

Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352
           T     ++Y    G++L+  P +   G+I LRI   +S+   P       +     P   
Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    N + TEI  
Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVF 446

Query: 413 AATPFLVKPV---AMRDL 427
             TP +V  V   +++DL
Sbjct: 447 IITPSIVDSVNAPSLKDL 464


>gi|86149355|ref|ZP_01067586.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88596641|ref|ZP_01099878.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218563075|ref|YP_002344854.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|85840137|gb|EAQ57395.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88191482|gb|EAQ95454.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360781|emb|CAL35581.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|284926681|gb|ADC29033.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927422|gb|EFV06760.1| Pilus biogenesis protein MshL [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929011|gb|EFV08254.1| General secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 472

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   SS G  + T
Sbjct: 269 GLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 328

Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352
           T     ++Y    G++L+  P +   G+I LRI   +S+   P       +     P   
Sbjct: 329 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 388

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    N + TEI  
Sbjct: 389 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVF 448

Query: 413 AATPFLVKPV---AMRDL 427
             TP +V  V   +++DL
Sbjct: 449 IITPSIVDSVNAPSLKDL 466


>gi|327395552|dbj|BAK12974.1| protein transport protein HofQ precursor HofQ [Pantoea ananatis
           AJ13355]
          Length = 430

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 244 DFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           D SV   L R      +  L ALE+   +  +A P L     Q+AS   G +  Y+  + 
Sbjct: 235 DVSVGVTLSRIGGKLLDLELSALEQENQVEIIASPRLFTSHQQTASIKQGTEIPYEVSAG 294

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DT 358
           ++GATS+   +  + +  TP VL  GRI L+I+   + P   V  GD     + K   +T
Sbjct: 295 NSGATSIEFKEAVLGMEVTPAVLGNGRIQLKIRISQNVPGRAVQTGDSQVLSIDKQEIET 354

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V +  G T+ L G+      + +  +PLL  +P++G+LFR     + + E+ I  TP L
Sbjct: 355 QVTVSDGQTLALGGIFHQQRTRGQRQVPLLGNLPVVGSLFRQHAEEQRKRELVIFMTPRL 414

Query: 419 VK 420
           V+
Sbjct: 415 VQ 416


>gi|326403170|ref|YP_004283251.1| type II secretory pathway protein D [Acidiphilium multivorum
           AIU301]
 gi|325050031|dbj|BAJ80369.1| type II secretory pathway protein D [Acidiphilium multivorum
           AIU301]
          Length = 758

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 9/169 (5%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGG--QHLYKTVSSS--TGA---TSVTTHDY 312
           + AL+  T ++ L+ P L   +G++A+   G    +L +T  S+  TGA    SV   + 
Sbjct: 541 ISALQSVTQVQVLSSPQLLVQNGRTANLLVGNLVPYLSQTSQSTLTTGAPVINSVNYQET 600

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           GV+L  TP + S G + L +  +VS   P +     + P++  R   ++V +  G TI L
Sbjct: 601 GVILQITPHISSDGLVALTVSQQVSNVAPSVTTQGLNSPTFSERAVSSSVVVHDGQTIGL 660

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           AGL+ D++Q+   G+P L  +P+LG LF     +R   E+ +  TP +V
Sbjct: 661 AGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDNSRARQELLVLITPHVV 709


>gi|153952576|ref|YP_001398775.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152940022|gb|ABS44763.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 470

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   SS G  + T
Sbjct: 267 GLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326

Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352
           T     ++Y    G++L+  P +   G+I LRI   +S+   P       +     P   
Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    N + TEI  
Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVF 446

Query: 413 AATPFLVKPV---AMRDL 427
             TP +V  V   +++DL
Sbjct: 447 IITPSIVDSVNAPSLKDL 464


>gi|160896756|ref|YP_001562338.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
 gi|160362340|gb|ABX33953.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
          Length = 819

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 128/256 (50%), Gaps = 29/256 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITG-------SSSG----PSKSFAADFGGKFVSEGG 243
           Q+ ++ +I EV  +   Q G Q + +G       S SG      K   AD     + +G 
Sbjct: 538 QILIEASIVEVTLNDGLQYGLQWAFSGDVGNNGYSGSGLISTDGKRTTADIAAA-IGQGF 596

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------T 297
           ++++K      + +  L+AL   T ++ +A P+L  +   +A+ + G Q  Y+      T
Sbjct: 597 NYTLKNSAG--TIKAALNALSSKTNVKVVASPSLMVLDNHTAAISVGTQQPYRSGEISTT 654

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---- 353
              S+ A S    D GV L  TP+V + G I   +   V++ V  V A D  + +V    
Sbjct: 655 TVGSSNAVSYQYKDTGVNLQVTPSV-NAGNI---VTMTVNQMVTDVGAKDEITQQVTFLQ 710

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+  + V + SG +IV+ GL++++    + GIP+L ++P++G LF ++  +   TE+ + 
Sbjct: 711 RQLSSRVSVRSGESIVMGGLIQENTSDGRSGIPVLHELPVVGNLFGSTNNSMRRTELLVI 770

Query: 414 ATPFLVKP-VAMRDLS 428
            TP +V+  V +R++S
Sbjct: 771 ITPRVVRTDVDIREVS 786


>gi|317494398|ref|ZP_07952812.1| type IV pilus secretin PilQ [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917648|gb|EFV38993.1| type IV pilus secretin PilQ [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 437

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 2/154 (1%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           +  +A P L A + Q+AS   G +  Y+  S ++G+TS+   +  + +  TP V+  G+I
Sbjct: 274 VEIIASPHLMATNLQTASIKQGTEIPYEVSSGASGSTSIEFKEAVLGMEVTPRVMRNGKI 333

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            L +Q   + P   +  GD  +  + K +  T V L  G T++L G+ +      K  +P
Sbjct: 334 TLTLQITQNMPGRSIKQGDGEALAIDKQEIKTQVTLSDGDTVILGGIFQRQTTHGKTQVP 393

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  IP+LGALFR+S    +  E+ I  TP LVK
Sbjct: 394 KLGDIPLLGALFRDSTDASKRRELVIFITPKLVK 427


>gi|148259896|ref|YP_001234023.1| general secretion pathway protein D [Acidiphilium cryptum JF-5]
 gi|146401577|gb|ABQ30104.1| general secretion pathway protein D [Acidiphilium cryptum JF-5]
          Length = 756

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 9/169 (5%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGG--QHLYKTVSSS--TGATSVTTHDY--- 312
           + AL+  T ++ L+ P L   +G++A+   G    +L +T  S+  TGA  + + +Y   
Sbjct: 539 ISALQSVTQVQVLSSPQLLVQNGRTANLLVGNLVPYLSQTSQSTLTTGAPVINSVNYQET 598

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           GV+L  TP + S G + L +  +VS   P +     + P++  R   ++V +  G TI L
Sbjct: 599 GVILQITPHISSDGLVALTVSQQVSNVAPSVTTQGLNSPTFSERAVSSSVVVHDGQTIGL 658

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           AGL+ D++Q+   G+P L  +P+LG LF     +R   E+ +  TP +V
Sbjct: 659 AGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDNSRARQELLVLITPHVV 707


>gi|308051183|ref|YP_003914749.1| pilus (MSHA type) biogenesis protein MshL [Ferrimonas balearica DSM
           9799]
 gi|307633373|gb|ADN77675.1| pilus (MSHA type) biogenesis protein MshL [Ferrimonas balearica DSM
           9799]
          Length = 551

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 153/346 (44%), Gaps = 50/346 (14%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           + LE TL + I   + R  +   T+   G+V +++     +   E+FL Q+ +N      
Sbjct: 228 SQLEQTLEKMIGSGDGRQVL---TLPQAGLV-SVKAYPHELREVESFLGQAQQNL----- 278

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFV 239
                       E QV L+  I EV      Q G   S +TGS      SF     G+F 
Sbjct: 279 ------------ERQVVLEARILEVVLSDGYQQGINWSEVTGSIGSTDISFGTS-EGQFS 325

Query: 240 SEGGDF--SVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +   D    + G+      F  V+  L+    + TL+ P +TAI+ Q A    G    + 
Sbjct: 326 NAVTDVIGGITGISFTGTDFSAVVTLLDTQGDVDTLSSPRVTAINNQKAVIKVGTDEYFV 385

Query: 297 T-VSSSTGA--TSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGV 343
           T +S++T A  T +TT D        G+ L  TP +   G + L +    T+++E    +
Sbjct: 386 TDISATTVASDTPITTPDVELTPFFSGIALDVTPQIGQSGEVLLHVHPSVTDITEQTKTI 445

Query: 344 NAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            A D      +   ++R++DT +   SG  +V+ GL+K   +Q++  +PLL +IP LG L
Sbjct: 446 TALDTTLELPLAQSQIRESDTMIRAHSGDVVVIGGLMKTLQEQVESKVPLLGQIPFLGEL 505

Query: 398 FRNSRFNREETEIFIAATPFLVKP-VAMRDLSRP----DDHYSVED 438
           F N      +TE+ I   P +V+P    + L R     DD Y  ++
Sbjct: 506 FTNRSQRNVKTELVILLRPTIVEPGTWQKQLQRSQQTLDDWYPSQN 551


>gi|170740267|ref|YP_001768922.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
 gi|168194541|gb|ACA16488.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
          Length = 779

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 128/257 (49%), Gaps = 23/257 (8%)

Query: 195 QVTLKVTIAEVR-RDILKQIGFQHSITGSSSGPSK--------SFAADFGGKFVSEGGDF 245
           QV + VTIAEV+  D LK  G Q  +   S G  +        S AA      +  G  F
Sbjct: 507 QVAVNVTIAEVKLNDELKH-GVQFFLDSRSLGLGRNKGSVGLVSAAASGASNVLKPGNGF 565

Query: 246 SVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGG-------QHLYKT 297
           +   ++  +S  + V++AL+  T ++ L+ P+L  +  Q A+   G        Q     
Sbjct: 566 NF--LVGGYSGPDVVINALDGFTDVKVLSSPSLVVLENQPATLQVGDSVPITTRQAQSVD 623

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            +++     V   D G++L+  P +     + ++I+ E+S  V+G +    P+   R+  
Sbjct: 624 FANAPLINQVEFRDTGIILNVIPRIGQNDAVTMQIEQEISA-VVGGSDTLTPTISKRRVA 682

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           +T+ + +G T++LAGL+ D  Q+ ++GIP+L ++P +GALF ++    E TE+ +   P 
Sbjct: 683 STISVANGQTVLLAGLISDKHQRERDGIPILGRLPQIGALFSSTNNADERTELVVFIRPV 742

Query: 418 LVKPVAMRDLSRPDDHY 434
           +V+  + RD  R  + Y
Sbjct: 743 VVR--SGRDAQRVAEDY 757


>gi|332995712|gb|AEF05767.1| general secretion pathway protein D [Alteromonas sp. SN2]
          Length = 680

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 10/180 (5%)

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT- 305
           + G++D   +  V+ A+   T    LA P LT +  + A F  G Q +     +STG+  
Sbjct: 438 IAGIIDN-GWGAVVQAVSTDTNSNVLATPHLTTMDNEEAYFIVG-QEVPIITGTSTGSNN 495

Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
                +V   + G+ L  TP +     + L I+ EVS  V G  + D+ S   R+  TTV
Sbjct: 496 SNPFQTVDRQEVGIKLKVTPQINEGDAVQLLIEQEVSS-VSGATSVDI-SINKREIKTTV 553

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  GGTIVL GL+ +D+Q+    +PLL  IPI+G LF+++  ++ +  + +   P +V+
Sbjct: 554 IVDDGGTIVLGGLIDEDVQESVSKVPLLGDIPIIGNLFKSTSTSKRKRNLMVFLKPTIVR 613


>gi|109896562|ref|YP_659817.1| general secretion pathway protein D [Pseudoalteromonas atlantica
           T6c]
 gi|109698843|gb|ABG38763.1| general secretion pathway protein D [Pseudoalteromonas atlantica
           T6c]
          Length = 689

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 17/228 (7%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G  +S   ++ G   + A+  GG        F V  V D +    VL A+   T    L+
Sbjct: 415 GDPYSFDETTEGDYTALASLLGGV-----NGFLVGAVKDGWG--AVLQAVSTDTNSNVLS 467

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGR 327
            P LT +  + A F  G Q +     S+TG+       SV   + G+ L  TP +     
Sbjct: 468 TPHLTTLDNEEAFFIVG-QEVPIITGSTTGSNNTNPFQSVERQEIGIKLKVTPQINEGNA 526

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L I+ EVS  + G  + D+   + R+  TTV +  GGTIVL GL+ DD+Q+    +P+
Sbjct: 527 VQLLIEQEVSS-ISGATSVDILINK-REIKTTVIVDDGGTIVLGGLIDDDVQESVSKVPI 584

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHY 434
           L  IP LG LF+++  ++ +  + +   P +++  V   D+SR   +Y
Sbjct: 585 LGDIPYLGNLFKSTTTSKSKRNLMVFIRPTIIRDGVTASDISRKKYNY 632


>gi|300690062|ref|YP_003751057.1| general Secretory Pathway protein D, type II secretion system
           [Ralstonia solanacearum PSI07]
 gi|299077122|emb|CBJ49746.1| General Secretory Pathway protein D, type II secretion system
           [Ralstonia solanacearum PSI07]
          Length = 805

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 16/215 (7%)

Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291
            GG+F   GV ++ +    +L AL    ++  L+ P L  +         GQ+   T+G 
Sbjct: 515 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 571

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPS 350
                + +S T   +    D G+ L   P +   G + ++I  E S  V G  NA   P+
Sbjct: 572 YAQTGSAASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQESSAVVNGTQNATQGPT 631

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             VR  +T V    G  IVL GLL+D+ Q  ++ +P L  IP+LGALFR+    R++T +
Sbjct: 632 TNVRSIETNVLANDGQVIVLGGLLEDNYQDAEQKVPGLGDIPVLGALFRSESKQRKKTNL 691

Query: 411 FIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFF 444
            +   P++++   A   LS  D+ Y+   D +  F
Sbjct: 692 LVFLRPYILRTAEATGALS--DNRYNYMRDTQQGF 724


>gi|57238497|ref|YP_179628.1| general secretory pathway protein D [Campylobacter jejuni RM1221]
 gi|57167301|gb|AAW36080.1| general secretory pathway protein D [Campylobacter jejuni RM1221]
          Length = 470

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   SS G  + T
Sbjct: 267 GLRVNLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326

Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352
           T     ++Y    G++L+  P +   G+I LRI   +S+   P       +     P   
Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    N + TEI  
Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVF 446

Query: 413 AATPFLVKPV---AMRDL 427
             TP +V  V   +++DL
Sbjct: 447 IITPSIVDSVNAPSLKDL 464


>gi|302342781|ref|YP_003807310.1| general secretion pathway protein D [Desulfarculus baarsii DSM
           2075]
 gi|301639394|gb|ADK84716.1| general secretion pathway protein D [Desulfarculus baarsii DSM
           2075]
          Length = 746

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 14/173 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGAT----SVT 308
           L AL +   ++ ++ P L A   QSA    G +          + +S+STG      S+ 
Sbjct: 537 LKALAQKDKLQVISSPLLLAAENQSARILVGREIPIITDLTTSEDISTSTGNKVVDRSIE 596

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGG 366
             D G++L  TP +   G + L I+ EVS+ V+  + GD   P++  R A T V    G 
Sbjct: 597 YRDVGIILTVTPRINDSGVVRLNIRQEVSD-VLTDSFGDTGSPAFSQRTATTNVVTTDGQ 655

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +IVLAGL+++   ++  G+P LS +PILG LF+  +     TE+ +  TP ++
Sbjct: 656 SIVLAGLIQETKHKIDSGVPFLSDVPILGYLFKTEKDVDSRTELILTITPHVI 708


>gi|118592650|ref|ZP_01550040.1| general secretion proteinD [Stappia aggregata IAM 12614]
 gi|118434701|gb|EAV41352.1| general secretion proteinD [Stappia aggregata IAM 12614]
          Length = 789

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 24/242 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFGGKFVSEGGDFSVK 248
           QV ++ TI EV  +   + G Q  ++G      SS  P  +   + G   +     F V 
Sbjct: 499 QVVIEATIVEVALNDRLKYGVQAFLSGEGVEIRSSRLPDPADTGEPGAVAL-----FDVD 553

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSS----- 301
            V D  +   VL AL+  T ++ ++ P LT + G++A  + G Q   L +  ++S     
Sbjct: 554 SV-DGTTATFVLEALQTVTELKVISSPYLTVLDGKAARLSVGDQIPFLVQQTNASETGTT 612

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADT 358
           T    +   D GV+L  TP++     + L +Q EVS       G N   + S R   +D 
Sbjct: 613 TTTNQIEVRDVGVILQVTPSIRPDNSVLLNVQQEVSSAKSSGSGENLTPVISQRTINSDV 672

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            +E  SG   +L GL++   +++   +PL+SK+PI+G LF+ +   ++ TE+ +  TP +
Sbjct: 673 VIE--SGKMALLGGLIQSRSEEVTTKVPLMSKMPIVGNLFKQTDAVKDRTELLVMITPRV 730

Query: 419 VK 420
           V+
Sbjct: 731 VR 732


>gi|332750364|gb|EGJ80775.1| transport protein hofQ domain protein [Shigella flexneri 4343-70]
          Length = 170

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 2/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   +  +A P L A   Q AS     +  Y+  S  +GATSV   +  + +  T
Sbjct: 6   LSALEQKQQLDIIASPRLLASHLQPASIKQESEIPYQVSSGESGATSVEFKEAVLGMEVT 65

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           PTVL  GRI L++    + P  V+    G++ +   ++ +T VE+ SG T+ L G+    
Sbjct: 66  PTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRK 125

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 126 NKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 167


>gi|157415698|ref|YP_001482954.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157386662|gb|ABV52977.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307748339|gb|ADN91609.1| General secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315930985|gb|EFV09960.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 470

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   SS G  + T
Sbjct: 267 GLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326

Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352
           T     ++Y    G++L+  P +   G+I LRI   +S+   P       +     P   
Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    N + TEI  
Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKVTEIVF 446

Query: 413 AATPFLVKPV---AMRDL 427
             TP +V  V   +++DL
Sbjct: 447 IITPSIVDSVNAPSLKDL 464


>gi|157372838|ref|YP_001480827.1| putative outer membrane porin HofQ [Serratia proteamaculans 568]
 gi|157324602|gb|ABV43699.1| type IV pilus secretin PilQ [Serratia proteamaculans 568]
          Length = 413

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-FGGKFVSEGGDFSVKGVLDR 253
           QV L   I  +  + L+++G +  +      P+ S+  D F      E    S    L R
Sbjct: 182 QVQLATHIVTINSESLRELGVRWGLAPDDR-PASSWQMDGFNVGLPLERSAVSAGFHLAR 240

Query: 254 FS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                 +  L ALE+   +  +A P L   + Q+AS   G +  Y+  S S+GATS+   
Sbjct: 241 IGGRLLDLELMALEQENRVEIIASPRLLTANLQTASIKQGTEIPYEVNSGSSGATSMEFK 300

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  GRI L +Q   + P   I   AG+  +   ++  T V +  G T+
Sbjct: 301 EAVLGMEVTPKILPNGRITLTLQISQNMPGRSISRAAGETLAIDKQEIKTQVTVKDGETV 360

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           VL G+ +    +  + +P +S +P+LG+LF+ S    +  E+ I  TP L+K
Sbjct: 361 VLGGVFQRHSAEGADKVPGISDVPLLGSLFKQSSKQHKRRELVIFITPTLIK 412


>gi|254479855|ref|ZP_05093103.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2148]
 gi|214039417|gb|EEB80076.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2148]
          Length = 677

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 20/236 (8%)

Query: 221 GSSSGPSKSFAADFG---GKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
           G  + PS     D G   G   S  G       V D  +   +L+AL+       L+ P+
Sbjct: 398 GDEATPSNDSEFDVGALAGALASTPGLSLGWGSVDDDLTMTVILNALKTQGNANILSTPS 457

Query: 277 LTAISGQSASFTSGGQHL------YKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPG 326
           L  +  Q A F + GQ++      Y    SS GA+    ++   + G+ L  TP +    
Sbjct: 458 LLTLDNQEA-FITVGQNVPFITGSYTNSGSSDGASNPFQTIERENVGITLAVTPHINEGD 516

Query: 327 RIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            + L I+ EVS  +IG +    A D+ +   RK  T V       +VL GL++D++Q  +
Sbjct: 517 SVVLEIEQEVSNVIIGASQISEAADIITSE-RKIQTKVLAQDSKVVVLGGLIEDNVQDGQ 575

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           + +P+L  IP LG LFR    +  +T + I   P +++  A  D +  D +  + D
Sbjct: 576 QKVPILGDIPFLGRLFRTDSVDVSKTNLLIFIRPTIIRDNAQLDGATADKYRYIRD 631


>gi|291612584|ref|YP_003522741.1| type IV pilus secretin PilQ [Sideroxydans lithotrophicus ES-1]
 gi|291582696|gb|ADE10354.1| type IV pilus secretin PilQ [Sideroxydans lithotrophicus ES-1]
          Length = 688

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L+A E     + +A P +       A+  SG +  Y   +SS GATSV      + L  T
Sbjct: 525 LNASELDGTTKNIASPRVVTGDKTPATIESGVEVPYLQATSS-GATSVAFKKAVLGLTVT 583

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     +G+++   VS+  +G     +PS   +K DT V + +GGT+V+ G+   D  
Sbjct: 584 PQITPDDHVGMKL--SVSQDTVGNIYSGVPSINTKKVDTQVLVDNGGTVVIGGVYTQDAT 641

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             KE IPLL  IPILG LF+     + + E+ +  TP +VK
Sbjct: 642 DSKEQIPLLGDIPILGWLFKTDTIVKAKKELLVFITPKIVK 682


>gi|297180471|gb|ADI16685.1| type II secretory pathway, component puld [uncultured gamma
           proteobacterium HF0010_05D02]
          Length = 666

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 12/179 (6%)

Query: 233 DFGGKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           D  G      G     GV+D   +  T+L+ LE+      L+ P+L  +  + A  T G 
Sbjct: 410 DLAGALSQVPGTTFGWGVVDENLTMTTILNTLEKQGNTNILSTPSLLTLDNEEAFITVGQ 469

Query: 292 QHLYKTVS-SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVI 341
           Q  + T S ++TGA         ++   + GV L  TP +     + + I  EVS     
Sbjct: 470 QVPFVTGSYTNTGAANGVANPFQTIQRENVGVTLQVTPQINEGDSVVMDIVQEVSSISQQ 529

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            ++A D+ +   RK +T V    G  +VL GL+KDDIQ  ++G+PLLS IP++G LFRN
Sbjct: 530 ALSASDVITNE-RKIETKVLAKDGDIVVLGGLVKDDIQDSQQGVPLLSGIPVVGRLFRN 587


>gi|294056469|ref|YP_003550127.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615802|gb|ADE55957.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 452

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 16/208 (7%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
           I+ +IG + ++ G++  P+         +    GG+          SF   +  LE +  
Sbjct: 176 IVDEIGSKLNVGGAT--PNTGQGGILNSQVWDNGGE----------SFNAFVRYLESSGK 223

Query: 269 IRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
            + L+ P L    G+  S  +G +   L +T SS    TS      G+ L   PT+++  
Sbjct: 224 AKILSAPNLIIQRGKEGSIVTGEEVPILSQTTSSGGVTTSTEFKSVGIKLSVKPTMIAGT 283

Query: 327 RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           R+ L +  EVS  +  + AG +  P   VR+A T +E+  G  I +AGLL+   +  +  
Sbjct: 284 RVRLEVNPEVSTVIDYIEAGGVSNPIIAVRQARTELEVNDGQLISMAGLLQSTERDTERR 343

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFI 412
            P+LS+IPILGALF++ R    +T++ I
Sbjct: 344 TPILSQIPILGALFKSDREQSSQTQLII 371


>gi|225850376|ref|YP_002730610.1| general secretion pathway protein D [Persephonella marina EX-H1]
 gi|225645330|gb|ACO03516.1| general secretion pathway protein D [Persephonella marina EX-H1]
          Length = 669

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 117/265 (44%), Gaps = 35/265 (13%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----------------SKSFAADFGG 236
           + QV +   I EV    LK+IG +  + GS  G                 S +F A   G
Sbjct: 369 KKQVLVTALITEVSEQALKEIGVRWQVFGSQGGAAFRGGISKEGFYNIIGSTNFVA---G 425

Query: 237 KFVSEGGDFSVKG-VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHL 294
              + G +  + G VL       +   LER T    ++ P +  +    AS   S     
Sbjct: 426 VLSTSGENVEIGGNVLFFPDLLFLFSLLERGTGFNIVSSPKILTMDNIEASINVSQVTPF 485

Query: 295 YKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNA 345
            ++V        +  +DY   G++L  TP + S   I + I  EV+E      P IG  +
Sbjct: 486 AQSVKFDINGNPIINYDYKEVGLILKVTPHI-SGDNIVMEIHQEVNEVIGYEKPQIGEIS 544

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P    R+ +TT+ + +G TIVL GL+     +  EG+P  S IPI+G LF+    + 
Sbjct: 545 YVVPITSKRELNTTITVTNGKTIVLGGLVSKKTIKTMEGVPFFSSIPIIGNLFKYRSEDL 604

Query: 406 EETEIFIAATPFLV-KPVAMRDLSR 429
            +T +F+  TPF++ KP    DL+R
Sbjct: 605 NKTNLFVFLTPFIIEKP---EDLAR 626


>gi|307579783|gb|ADN63752.1| general secretion pathway protein D [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 721

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 38/245 (15%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G  S  ++S      GK  S G  ++  G     +   +++AL++ T +R L  P++   
Sbjct: 480 GLPSAAARSGWKSIAGKVTSNGLAWTFLGK----NAAAIINALDQVTQVRLLQTPSVFVR 535

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQT 334
           +   A+   G +    + S +TG  S +T+      D GV+L   P V   G + L I  
Sbjct: 536 NNAEATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQ 595

Query: 335 EVSEPVIGVNAGDMPS------------------YRVRKADTTVELPSGGTIVLAGLLKD 376
           EVS P      G +P+                     R+  T   + SG TI+LAGL+  
Sbjct: 596 EVSTP------GSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDS 649

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYS 435
           +  +   G+P LSK+PI+G LF     N    EI +  TP +V+ P   R+L+   D YS
Sbjct: 650 NSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLT---DEYS 706

Query: 436 VEDDA 440
            + +A
Sbjct: 707 QKFNA 711


>gi|285019414|ref|YP_003377125.1| general secretion pathway protein d [Xanthomonas albilineans GPE
           PC73]
 gi|283474632|emb|CBA17131.1| probable general secretion pathway protein d [Xanthomonas
           albilineans]
          Length = 772

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 139/316 (43%), Gaps = 52/316 (16%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----F 215
           AVE + T L +S    +   S + V+  L++    QV ++  +AEV      Q G    F
Sbjct: 452 AVEETNTLLVRSTPQAW--RSIRDVVEKLDVM-PMQVHIEAQVAEVSLTGDLQYGVNWFF 508

Query: 216 QHSITGSSSG--------------PS---KSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           ++S+  S+ G              PS   +    D  GK  S+G  ++  G     +   
Sbjct: 509 ENSVNASTDGSAANGTGIGRGAGLPSAAGRKIWGDIAGKIGSDGVGWTFLG----RNAAA 564

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDY 312
           V+ AL++ T ++ L  P++   +   A+   G +    + S +TG       +SV   D 
Sbjct: 565 VITALDKVTNLKLLQTPSVFVRNNAEATLNVGTRIPINSTSINTGIGIDSSYSSVQYIDT 624

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP-------------VIGVNAGDMPSYRVRKADTT 359
           GV+L   P V   G + L I  EVS P             V+  +A ++     R+  T 
Sbjct: 625 GVILKVRPRVTKDGMVFLDIVQEVSTPSARPAACTAGTTNVVNTSACNV-DINTRRVKTE 683

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             + SG TI+LAGL+ D       G+P LSK+P++GALF      +   E+ +  TP +V
Sbjct: 684 AAVQSGDTIMLAGLINDSTVDSSLGVPFLSKMPVIGALFGQKGQQKNRNEVIVLLTPTIV 743

Query: 420 K-PVAMRDLSRPDDHY 434
           + P   R+L+   D Y
Sbjct: 744 RDPQEARNLT---DEY 756


>gi|119505085|ref|ZP_01627161.1| Helix-turn-helix, AraC type [marine gamma proteobacterium HTCC2080]
 gi|119459067|gb|EAW40166.1| Helix-turn-helix, AraC type [marine gamma proteobacterium HTCC2080]
          Length = 696

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 89/198 (44%), Gaps = 10/198 (5%)

Query: 233 DFGGKFVSEGGDFSVKGVL-DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           D  G      G     GV+ D  S   +L+ALE       L+ P+L  +  Q A  T G 
Sbjct: 432 DLAGALSQVPGTTLGWGVVGDDLSMSVILNALETQGNANILSTPSLLTLDNQEAYITVGQ 491

Query: 292 QHLYKTVS-SSTGATS--------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
              + T S S+TG  S        +   + G+ L  TP V     + L I  EVS     
Sbjct: 492 NVPFVTGSYSNTGGASNVQNPFQTIERENVGITLKVTPQVNEGDSVVLDIVQEVSSISQQ 551

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           + A        RK +T V    G  +VL GL+KDD+Q  ++G+P L  IP+LG LFRN  
Sbjct: 552 LLAAADVITNERKIETKVMAQDGDVVVLGGLVKDDVQDSQQGVPFLQDIPLLGRLFRNDV 611

Query: 403 FNREETEIFIAATPFLVK 420
            +  ++ + +   P +V+
Sbjct: 612 VSVTKSNLLVFIRPTIVR 629


>gi|312143742|ref|YP_003995188.1| type II and III secretion system protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904393|gb|ADQ14834.1| type II and III secretion system protein [Halanaerobium sp.
           'sapolanicus']
          Length = 431

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 25/237 (10%)

Query: 190 IAGED----QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           IAG D    QV +K  I E+ R+ +K++G              SF  D  G         
Sbjct: 166 IAGLDRPQKQVLIKARIEEISRNKVKELGI-----NPDQLSELSFIKDDSG--------- 211

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTG 303
           S++ +  R ++   L  LE   A   LA P+L  +  Q A    G Q   K   V     
Sbjct: 212 SIEKI--RVNWPDTLKILEEEGASNILANPSLMTLDRQKAKLVIGDQIPVKLERVEGDNI 269

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVEL 362
            +S++  + G+VL F P +++  +I L I+  V+   IG    D +P+   R A+TTV L
Sbjct: 270 VSSLSYIEAGIVLEFLPKIINDNQILLEIKPSVNS--IGQVVSDGLPAVNSRSAETTVIL 327

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +   + + GL+K+D  +    IP  S++P+ G LF++ +     +E+ I  +P ++
Sbjct: 328 ENEQVLAIGGLIKEDEIKSLSKIPFFSELPLFGNLFKSEKSTVMNSELMIFISPEII 384


>gi|85859832|ref|YP_462034.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
 gi|85722923|gb|ABC77866.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
          Length = 717

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 120/273 (43%), Gaps = 28/273 (10%)

Query: 186 NLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           NLLN+         QV ++ TI E+      + G +  I  S  G   S+     GK   
Sbjct: 449 NLLNLLQALDVPARQVLIEATIVELTLTDELKYGVEWFIRNSWDG--DSYTLGTLGKLGL 506

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQ- 292
           E    +   +     FE ++ AL   +    L+ P L  +    A+   G       GQ 
Sbjct: 507 EPLGLTYAFLSRTGQFEALISALAEKSKANILSTPRLMVLDNMEATIQVGKDVPTVTGQI 566

Query: 293 ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
                  T  S++ + S+     GV+L   PT+ + G + L I  EVS+       GD P
Sbjct: 567 STLDSVNTTDSTSVSQSIQYRSTGVMLKVKPTINTEGLMTLEITQEVSDIAETPGVGDSP 626

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG-IPLLSKIPILGALFRNSRFNREET 408
               R+ +T++    G TIVL GL++++ Q L E  +PLL  IPILG LF+ +   +++T
Sbjct: 627 IILTRRINTSIIAAHGQTIVLGGLMQEN-QSLGESKVPLLGDIPILGNLFKATSKTKDKT 685

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           E+ +  TP +        L+ P+D   + D  +
Sbjct: 686 ELLVLVTPTI--------LTDPNDAVKITDQLR 710


>gi|304411539|ref|ZP_07393152.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS183]
 gi|307306685|ref|ZP_07586427.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           BA175]
 gi|304350066|gb|EFM14471.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS183]
 gi|306910653|gb|EFN41082.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           BA175]
          Length = 559

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 121/276 (43%), Gaps = 44/276 (15%)

Query: 179 SSSKKVMNLLNIAG---EDQVTLKVTIAEV-----------RRDILKQIGFQHSITGSSS 224
           S  ++V   LN A    + QV L+  I EV             ++L  +G  +   G+S 
Sbjct: 269 SELRQVRTFLNSAESHLQRQVILEAKIIEVTLSDGYQQGIQWENVLGHVGNTNVNFGTSK 328

Query: 225 GP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           GP  S    +  GG         S+KG      F T+++ L+    +  L+ P +TA + 
Sbjct: 329 GPGLSDKITSAIGGV-----TSLSIKGS----DFTTMINLLDTQGDVDVLSSPRVTASNN 379

Query: 283 QSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRI 332
           Q A    G    + T  SST   GAT VTT          G+ L  TP + S G + L +
Sbjct: 380 QKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFFSGIALDVTPQIDSDGNVLLHV 439

Query: 333 Q---TEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
                +V E    +   D      +    +R++DT +   SG  +++ GL+K +  ++  
Sbjct: 440 HPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAASGDVVIIGGLMKSENTEVVS 499

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +PLL  IP LG LF+N    +++TE+ I   P +V
Sbjct: 500 QVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535


>gi|163849487|ref|YP_001637530.1| general secretion pathway protein D [Methylobacterium extorquens
           PA1]
 gi|163661092|gb|ABY28459.1| general secretion pathway protein D [Methylobacterium extorquens
           PA1]
          Length = 794

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 32/283 (11%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           E + + +  + RNQY      K++ +L    A   QV L+  IAEV  +   Q G Q  +
Sbjct: 473 EANNSLVISATRNQY-----DKILRILGRLDAMPTQVLLETVIAEVTLNNELQFGVQWFL 527

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD-------FSVKGV------LDRFSFETVLHALERA 266
              +SG   + A     + V++G          + +GV      L+   F  VL+AL+  
Sbjct: 528 --KNSGSRFNLAQADTNRSVAQGTSGTDALIKAAARGVPGFNYLLNASDFNVVLNALQGV 585

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATS------VTTHDYGVVLHFT 319
           T +  ++ P +T +  ++A    G Q  + +    S  A        +   D GV+L  T
Sbjct: 586 TRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVILSVT 645

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P V   G + L I  EVS+ V+     ++  P+ R R+  T+V +  G ++ + G++++ 
Sbjct: 646 PRVNKNGLVVLDINQEVSD-VVKTTTSEINSPTIRQRRVATSVAVNDGHSLAIGGMVQEK 704

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            Q   E +PLL  +PI+G  FRN    R  TE+ +   P +++
Sbjct: 705 AQITNESVPLLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIR 747


>gi|152999034|ref|YP_001364715.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS185]
 gi|151363652|gb|ABS06652.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS185]
          Length = 559

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 121/276 (43%), Gaps = 44/276 (15%)

Query: 179 SSSKKVMNLLNIAG---EDQVTLKVTIAEV-----------RRDILKQIGFQHSITGSSS 224
           S  ++V   LN A    + QV L+  I EV             ++L  +G  +   G+S 
Sbjct: 269 SELRQVRTFLNSAESHLQRQVILEAKIIEVTLSDGYQQGIQWENVLGHVGNTNVNFGTSK 328

Query: 225 GP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           GP  S    +  GG         S+KG      F T+++ L+    +  L+ P +TA + 
Sbjct: 329 GPGLSDKITSAIGGV-----TSLSIKGS----DFTTMINLLDTQGDVDVLSSPRVTASNN 379

Query: 283 QSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRI 332
           Q A    G    + T  SST   GAT VTT          G+ L  TP + S G + L +
Sbjct: 380 QKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFFSGIALDVTPQIDSDGNVLLHV 439

Query: 333 Q---TEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
                +V E    +   D      +    +R++DT +   SG  +++ GL+K +  ++  
Sbjct: 440 HPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAASGDVVIIGGLMKSENTEVVS 499

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +PLL  IP LG LF+N    +++TE+ I   P +V
Sbjct: 500 QVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535


>gi|28198648|ref|NP_778962.1| general secretory pathway protein D precursor [Xylella fastidiosa
           Temecula1]
 gi|182681332|ref|YP_001829492.1| general secretion pathway protein D [Xylella fastidiosa M23]
 gi|28056739|gb|AAO28611.1| general secretory pathway protein D precursor [Xylella fastidiosa
           Temecula1]
 gi|182631442|gb|ACB92218.1| general secretion pathway protein D [Xylella fastidiosa M23]
          Length = 775

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 38/245 (15%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G  S  ++S      GK  S G  ++  G     +   +++AL++ T +R L  P++   
Sbjct: 534 GLPSAAARSGWKSIAGKVTSNGLAWTFLG----KNAAAIINALDQVTQVRLLQTPSVFVR 589

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQT 334
           +   A+   G +    + S +TG  S +T+      D GV+L   P V   G + L I  
Sbjct: 590 NNAEATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQ 649

Query: 335 EVSEPVIGVNAGDMPS------------------YRVRKADTTVELPSGGTIVLAGLLKD 376
           EVS P      G +P+                     R+  T   + SG TI+LAGL+  
Sbjct: 650 EVSTP------GSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDS 703

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYS 435
           +  +   G+P LSK+PI+G LF     N    EI +  TP +V+ P   R+L+   D YS
Sbjct: 704 NSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLT---DEYS 760

Query: 436 VEDDA 440
            + +A
Sbjct: 761 QKFNA 765


>gi|239787173|emb|CAR94716.1| wmpD protein [Pseudoalteromonas ruthenica]
          Length = 688

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 105/220 (47%), Gaps = 18/220 (8%)

Query: 218 SITGSSSGP----SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           ++ GS SG     S++   D G      GG   +   + +  +  ++ A+   T    LA
Sbjct: 412 NVVGSESGVVTPISRTEEGDLGPLASLLGGINGLAMGIVKNDWGAIVQAVSNDTNSNILA 471

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGR 327
            P++T +  + AS   G Q +     SSTG+       +V   + GV L  TP +     
Sbjct: 472 TPSITTMDNEEASMIVG-QEVPIITGSSTGSNNENPFQTVDRQEVGVKLKVTPQINDGSA 530

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L I+ EVS  V G  A D+ S   R   TTV    GG +VL GL+ +D+Q+    +PL
Sbjct: 531 VQLTIEQEVSN-VAGSTAVDI-SINKRAITTTVLADDGGMVVLGGLIDEDVQESVSKVPL 588

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           L  IP+LG LF+++  ++ +  + +      ++P  +RD+
Sbjct: 589 LGDIPVLGHLFKSTSTSKRKRNLIV-----FIRPTILRDI 623


>gi|160873627|ref|YP_001552943.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS195]
 gi|160859149|gb|ABX47683.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS195]
 gi|315265856|gb|ADT92709.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS678]
          Length = 559

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 121/276 (43%), Gaps = 44/276 (15%)

Query: 179 SSSKKVMNLLNIAG---EDQVTLKVTIAEV-----------RRDILKQIGFQHSITGSSS 224
           S  ++V   LN A    + QV L+  I EV             ++L  +G  +   G+S 
Sbjct: 269 SELRQVRTFLNSAESHLQRQVILEAKIIEVTLSDGYQQGIQWENVLGHVGNTNVNFGTSK 328

Query: 225 GP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           GP  S    +  GG         S+KG      F T+++ L+    +  L+ P +TA + 
Sbjct: 329 GPGLSDKITSAIGGV-----TSLSIKGS----DFTTMINLLDTQGDVDVLSSPRVTASNN 379

Query: 283 QSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRI 332
           Q A    G    + T  SST   GAT VTT          G+ L  TP + S G + L +
Sbjct: 380 QKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFFSGIALDVTPQIDSDGNVLLHV 439

Query: 333 Q---TEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
                +V E    +   D      +    +R++DT +   SG  +++ GL+K +  ++  
Sbjct: 440 HPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAASGDVVIIGGLMKSENTEVVS 499

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +PLL  IP LG LF+N    +++TE+ I   P +V
Sbjct: 500 QVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535


>gi|313891897|ref|ZP_07825499.1| bacterial type II/III secretion system short domain protein
           [Dialister microaerophilus UPII 345-E]
 gi|313119672|gb|EFR42862.1| bacterial type II/III secretion system short domain protein
           [Dialister microaerophilus UPII 345-E]
          Length = 405

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 28/227 (12%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGF------------QHSITGSSSGPSKSF---AADFGGK 237
           E QV ++  +  V R   K +G             Q ++   SS    S+     D+ G 
Sbjct: 166 EKQVKVEAEVLAVNRSYAKDLGIDWQFKSLTGQAEQRNVYDKSSKTKTSYLKIPEDYAG- 224

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLY 295
            +S G   S+ G    F F+  L+AL      + LA+P +  ++G++A    G +   L 
Sbjct: 225 -ISYGK--SITGNPYTFFFQAKLNALLSDGKAKILAKPNVVTLNGRTAEILIGSKIPVLV 281

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-- 353
           + + + T  TS+   D G+ L +TP V     I   I  EVS P +     +M +YR+  
Sbjct: 282 EHMENGTKTTSIEYKDAGIKLTYTPNVSKNSEITADIIAEVSTPYL---VPEMKAYRIVT 338

Query: 354 RKADTTVELPSGGTIVLAGLL-KDDIQQLKEGIPLLSKIPILGALFR 399
           R+A TTV L SG  + + GL+ K++   +++ +P+L  IPILG LF+
Sbjct: 339 RQAHTTVRLKSGDMLTIGGLIDKEEANNIRK-VPVLGDIPILGKLFQ 384


>gi|325294586|ref|YP_004281100.1| general secretion pathway protein D [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065034|gb|ADY73041.1| general secretion pathway protein D [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 630

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 111/246 (45%), Gaps = 28/246 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVL-- 251
           QV ++V I E+  D L Q+G +      S G    F     G    + G  S   G+L  
Sbjct: 342 QVFVEVQIVEMSMDKLLQLGVEWKFL--SRGNLVPFGGSLYGNLPLQAGYPSASPGLLLG 399

Query: 252 ------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA- 304
                 D      +L+A  +   +  +A P +  +  + A       ++ K +  STG  
Sbjct: 400 IAKWRGDTPDIGLLLNAYAKEGGVNVIATPQILTLDNEEAEI-----NISKVIPYSTGVK 454

Query: 305 -----TSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVR 354
                  V ++DY   G+ L  TP + + G + L+I  +V E V+G    D   P    R
Sbjct: 455 YDANNNPVISYDYKDVGITLKITPHITASGEVRLKIYEKV-EDVVGYANADQTAPITSKR 513

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +A TTV++  G T+V+ GL+K       E +P+L  IP+LG LF+ +    E+T + +  
Sbjct: 514 EAKTTVDVQDGQTLVIGGLIKSKKLTTIEKVPVLGNIPVLGNLFKKTGHQIEKTNLLVFI 573

Query: 415 TPFLVK 420
           TP +V+
Sbjct: 574 TPRVVR 579


>gi|88861068|ref|ZP_01135703.1| General secretion pathway protein D [Pseudoalteromonas tunicata D2]
 gi|18643169|gb|AAL76242.1|AF441248_2 WmpD [Pseudoalteromonas tunicata]
 gi|88816996|gb|EAR26816.1| General secretion pathway protein D [Pseudoalteromonas tunicata D2]
          Length = 689

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 10/189 (5%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------S 306
           R  +  +L A+   T    LA P++T +  + AS   G Q +     S TG        +
Sbjct: 450 RGDWGAILQAVSTDTNSNILATPSVTTMDNEEASMIVG-QEVPIITGSQTGNNNTNPFQT 508

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V   + G+ L  TP +     + L I+ EVS  V G  A D+ +   R+  TTV    G 
Sbjct: 509 VERQEVGIKLKVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-TINKREVTTTVLADDGA 566

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MR 425
            +VL GL+ +D+Q+    +PLL  +PI+G LF+++  NR +  + I   P +++  A M 
Sbjct: 567 MVVLGGLIDEDVQESVSKVPLLGDLPIIGHLFKSTSTNRRKRNLLIFIRPTIIRDSATMN 626

Query: 426 DLSRPDDHY 434
            LS    +Y
Sbjct: 627 QLSNSKYNY 635


>gi|149174476|ref|ZP_01853102.1| Type IV pilin multimeric outer membrane protein [Planctomyces maris
           DSM 8797]
 gi|148846586|gb|EDL60923.1| Type IV pilin multimeric outer membrane protein [Planctomyces maris
           DSM 8797]
          Length = 799

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 15/198 (7%)

Query: 226 PSKSFAADFGG-KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           P+  F AD  G K+    GD S             + ALE  T    +A P L A++ Q 
Sbjct: 505 PTGQFIADVAGLKYGFLHGDIS-----------GFIEALEDVTETNLIASPQLRALNKQK 553

Query: 285 ASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A    G +  Y TV+ +  T   +V   D G+VL+  P +   G+I + +  E S   I 
Sbjct: 554 AELIIGDRISYSTVTQNGNTSIQNVNFLDSGIVLNLRPFITPDGQIRMEVHPERSSATIN 613

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +  ++P  R  +  T V +  G T+V+ GL+++     +  +P L  +P++G  FR  R
Sbjct: 614 PST-NLPDLRTTEVTTNVMVRDGHTVVIGGLIEERTSDTRNQVPFLGALPVIGNAFRQQR 672

Query: 403 FNREETEIFIAATPFLVK 420
                TE+ +  TP +V+
Sbjct: 673 EITNRTELIVLITPRIVR 690


>gi|114328429|ref|YP_745586.1| general secretion pathway protein D [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316603|gb|ABI62663.1| general secretion pathway protein D [Granulibacter bethesdensis
           CGDNIH1]
          Length = 779

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 8/173 (4%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308
           S +  +  L+  T ++ L+ P L  +  + A    G    Y       T+  S    +V+
Sbjct: 557 SSQLAMTLLQSVTKVQVLSSPELMVLDNEPARLQVGALVPYLTAQSQATIGQSAIINAVS 616

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGG 366
               GV+L+ TP V + G + L I  EVS+    I  N    P+++ R   + V +  G 
Sbjct: 617 YQQTGVILNVTPRVNNSGLVTLDISQEVSDVDTSINTNGISSPAFQQRSVQSRVVVQDGQ 676

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           T+ LAGL++D+  +   G+P L  +P+LG++F     NR  TE+ I  TP ++
Sbjct: 677 TVGLAGLIRDNNSRANGGVPFLKDVPVLGSVFGQQNNNRSRTELLILVTPHVI 729


>gi|325926645|ref|ZP_08187959.1| general secretion pathway protein D [Xanthomonas perforans 91-118]
 gi|325542997|gb|EGD14446.1| general secretion pathway protein D [Xanthomonas perforans 91-118]
          Length = 763

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 105/239 (43%), Gaps = 38/239 (15%)

Query: 221 GSSSGPSKSFAADFGGKFV-SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           G  S   ++   D  GK   +EG  +S  G     +   ++ AL++ T +R L  P++  
Sbjct: 521 GLPSAAGRNIWGDIAGKVTGTEGLAWSFLGK----NAAAIITALDKVTNVRLLQTPSVFV 576

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQ 333
            +   A+   G +    + S +TG  + T++      D GV+L   P V   G + L I 
Sbjct: 577 RNNAEATLNVGSRIAINSTSINTGIGTDTSYSSVQYIDTGVILKVRPRVTKDGMVFLDIV 636

Query: 334 TEVSEPVIGVNAGDMPS-----------------YRVRKADTTVELPSGGTIVLAGLLKD 376
            EVS P      GD P+                    R+  T   + SG TI+LAGL+ D
Sbjct: 637 QEVSSP------GDRPAACTSATATINAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDD 690

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434
                 +G+P LSK+P++GALF          E+ +  TP +V+ P   R+L+   D Y
Sbjct: 691 TTSDTSDGVPFLSKLPVVGALFGTKGKTSNRREVIVLITPSIVRNPQEARNLT---DEY 746


>gi|148555505|ref|YP_001263087.1| general secretion pathway protein D [Sphingomonas wittichii RW1]
 gi|148500695|gb|ABQ68949.1| general secretion pathway protein D [Sphingomonas wittichii RW1]
          Length = 682

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 116/259 (44%), Gaps = 38/259 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSF--------------AADFGG 236
           QV ++  I E+  D  +Q+  Q  I  ++    SG + SF               +   G
Sbjct: 390 QVLIEAAIVEISGDQAEQLAVQLGIGAAAINRASGGATSFTSPGLPLQSILTAIGSPAAG 449

Query: 237 KFVSEGGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             +S GG  ++     RF  +F  +L A+ ++T    L+ P+LT +  + A    G    
Sbjct: 450 AVLSNGGSANI-----RFGDNFSILLQAIGQSTRSNLLSTPSLTTLDNEPAEIVVGQNVP 504

Query: 295 YKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGD 347
           ++T S ST        T++   D G+ L   P +     + L +  EVS     V  A D
Sbjct: 505 FRTGSFSTDGNTINPFTTIERQDVGLTLRVVPRIHQGNVVRLEVAQEVSSLTNAVTGAAD 564

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + + R R   T+V    G TIVL GL+ DD  Q +  +P+L  IPI G LFR+ + +  +
Sbjct: 565 LITNR-RSIQTSVLADDGQTIVLGGLISDDRTQTRSQVPILGDIPIAGELFRSRKESHVK 623

Query: 408 TEIFIAATPFLVKPVAMRD 426
             +F+      +KP  +RD
Sbjct: 624 RTLFV-----FLKPTILRD 637


>gi|332535166|ref|ZP_08410973.1| type II secretion outer membrane pore forming protein PulD
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035385|gb|EGI71885.1| type II secretion outer membrane pore forming protein PulD
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 687

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A+   T    LA P++T +  + AS   G Q +     S TG+       +V  
Sbjct: 453 WGAIIQAVATDTNSNILATPSITTMDNEEASILVG-QEVPIITGSQTGSNNANPFQTVER 511

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            + G+ L  TP +     + L I+ EVS  V G  A D+ S   R   TTV    GG +V
Sbjct: 512 QEVGIKLIVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRAIKTTVMADDGGMVV 569

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLS 428
           L GL+ +D+Q+    +PLL  IPILG LFR++   R +  + +   P +++  V+M  LS
Sbjct: 570 LGGLIDEDVQESVSKVPLLGDIPILGHLFRSTNTTRRKRNLIVFIRPTIIRDGVSMNKLS 629


>gi|329121951|ref|ZP_08250564.1| type II and III secretion system protein [Dialister micraerophilus
           DSM 19965]
 gi|327467397|gb|EGF12896.1| type II and III secretion system protein [Dialister micraerophilus
           DSM 19965]
          Length = 405

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 28/227 (12%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGF------------QHSITGSSSGPSKSF---AADFGGK 237
           E QV ++  +  V R   K +G             Q ++   SS    S+     D+ G 
Sbjct: 166 EKQVKVEAEVLAVNRSYAKDLGIDWQFKSLTGQAEQRNVYDKSSKTKTSYLKIPEDYAG- 224

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLY 295
            +S G   S+ G    F F+  L+AL      + LA+P +  ++G++A    G +   L 
Sbjct: 225 -ISYGK--SITGNPYTFFFQAKLNALLSDGKAKILAKPNVVTLNGRTAEILIGSKIPVLV 281

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-- 353
           + + + T  TS+   D G+ L +TP V     I   I  EVS P +     +M +YR+  
Sbjct: 282 EHMENGTKTTSIEYKDAGIKLTYTPNVSKNSEITADIIAEVSTPYL---VPEMKAYRIVT 338

Query: 354 RKADTTVELPSGGTIVLAGLL-KDDIQQLKEGIPLLSKIPILGALFR 399
           R+A TTV L SG  + + GL+ K++   +++ +P+L  IPILG LF+
Sbjct: 339 RQAHTTVRLKSGDMLTIGGLIDKEEANNIRK-VPVLGDIPILGKLFQ 384


>gi|71274709|ref|ZP_00650997.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Dixon]
 gi|170730050|ref|YP_001775483.1| general secretory pathway protein D [Xylella fastidiosa M12]
 gi|71164441|gb|EAO14155.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Dixon]
 gi|167964843|gb|ACA11853.1| general secretory pathway protein D precursor [Xylella fastidiosa
           M12]
          Length = 775

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 38/245 (15%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G  S   +S      GK  S G  ++  G     +   +++AL++ T +R L  P++   
Sbjct: 534 GLPSAAGRSGWKSIAGKVTSNGLAWTFLGK----NAAAIINALDQVTQVRLLQTPSVFVR 589

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQT 334
           +   A+   G +    + S +TG  S +T+      D GV+L   P V   G + L I  
Sbjct: 590 NNAEATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQ 649

Query: 335 EVSEPVIGVNAGDMPS------------------YRVRKADTTVELPSGGTIVLAGLLKD 376
           EVS P      G +P+                     R+  T   + SG TI+LAGL+  
Sbjct: 650 EVSTP------GSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDS 703

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYS 435
           +  +   G+P LSK+PI+G LF     N    EI +  TP +V+ P   R+L+   D YS
Sbjct: 704 NSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLT---DEYS 760

Query: 436 VEDDA 440
            + +A
Sbjct: 761 QKFNA 765


>gi|71899610|ref|ZP_00681765.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
 gi|71730652|gb|EAO32728.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
          Length = 775

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 38/245 (15%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G  S   +S      GK  S G  ++  G     +   +++AL++ T +R L  P++   
Sbjct: 534 GLPSAAGRSGWKSIAGKVTSNGLAWTFLGK----NAAAIINALDQVTQVRLLQTPSVFVR 589

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQT 334
           +   A+   G +    + S +TG  S +T+      D GV+L   P V   G + L I  
Sbjct: 590 NNAEATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQ 649

Query: 335 EVSEPVIGVNAGDMPS------------------YRVRKADTTVELPSGGTIVLAGLLKD 376
           EVS P      G +P+                     R+  T   + SG TI+LAGL+  
Sbjct: 650 EVSTP------GSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDS 703

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYS 435
           +  +   G+P LSK+PI+G LF     N    EI +  TP +V+ P   R+L+   D YS
Sbjct: 704 NSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLT---DEYS 760

Query: 436 VEDDA 440
            + +A
Sbjct: 761 QKFNA 765


>gi|292493619|ref|YP_003529058.1| general secretion pathway protein D [Nitrosococcus halophilus Nc4]
 gi|291582214|gb|ADE16671.1| general secretion pathway protein D [Nitrosococcus halophilus Nc4]
          Length = 767

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 124/247 (50%), Gaps = 22/247 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQ---HSITGSSSGPSK-SFAADFGGKFVSEGGDFSVKGV 250
           QV ++ TIAEV+     Q G Q    +  G  +G    +F+ D G     +G +  + G 
Sbjct: 474 QVLVEATIAEVQLTDNLQYGLQWFFRNEVGEFTGTGAVNFSTDVGDNGFLQGVEGLLGGG 533

Query: 251 LDRFSF--ETVLHALERATA----IRTLAEPTLTAISGQSASFTSG-------GQHLYKT 297
              ++   ++++ AL R  A    +  L+ P L A+  Q+A+   G       GQ     
Sbjct: 534 GFTYALTDDSIVRALLRTLASDSKLNVLSSPQLLALDNQTAAIRVGDQVPILTGQTAGLA 593

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPV-IGVNAGDMPSYRV 353
            + +T  + V   D GV+L  TP V + GR+ L I+   T+V +PV +G +  +  ++  
Sbjct: 594 GTGNTLTSQVQFRDTGVLLTVTPRVNAGGRVTLEIRQEVTDVGDPVTVGSDIQNF-TFLQ 652

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R  ++ V + SG TIVL GL++D       G+P L K+P +G LF ++  +++ TE+ + 
Sbjct: 653 RTFESVVTVQSGETIVLGGLIRDRDSFTDSGVPFLYKLPFIGPLFGSTTRDKQRTELIVL 712

Query: 414 ATPFLVK 420
            TP +V+
Sbjct: 713 MTPRVVR 719


>gi|300702677|ref|YP_003744277.1| general secretory pathway protein d, type II secretion system
           [Ralstonia solanacearum CFBP2957]
 gi|299070338|emb|CBJ41633.1| General Secretory Pathway protein D, type II secretion system
           [Ralstonia solanacearum CFBP2957]
          Length = 809

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 19/193 (9%)

Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291
            GG+F   GV ++ +    +L AL    ++  L+ P L  +         GQ+   T+G 
Sbjct: 519 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 575

Query: 292 QHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347
              Y    SS   T   T    D G+ L   P +   G + ++I  E S  V G  NA  
Sbjct: 576 ---YAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQESSAVVNGTQNATQ 632

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P L  IPILGALFR+    R++
Sbjct: 633 GPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPILGALFRSESKERKK 692

Query: 408 TEIFIAATPFLVK 420
           T + +   P++++
Sbjct: 693 TNLLVFLRPYILR 705


>gi|315500691|ref|YP_004089492.1| type II and III secretion system protein [Asticcacaulis excentricus
           CB 48]
 gi|315418703|gb|ADU15341.1| type II and III secretion system protein [Asticcacaulis excentricus
           CB 48]
          Length = 626

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 13/182 (7%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG---ATSVT 308
           R   +  L+AL   + +R ++ P +TA    +AS   G Q  + K  S ST    A  V+
Sbjct: 423 RSDIKAALNALSSKSKVRIVSAPKMTARENATASLQIGDQVPIVKQNSQSTNGGNAPIVS 482

Query: 309 THDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPS 364
           T DY   GV L  TP VL+  R+ + +  EVS       +G D P+ + RK ++++ +P 
Sbjct: 483 TIDYRDTGVTLKVTPRVLNDNRVAMDVTQEVSSVARTQTSGIDSPTIKQRKLESSLIIPE 542

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  + L GL+       + G PLL  IP LG LF+    N++ TE+ +     L++   +
Sbjct: 543 GTVVALGGLISSSESDSEGGAPLLKDIPGLGNLFKQRARNKDRTELIV-----LIQVTIL 597

Query: 425 RD 426
           RD
Sbjct: 598 RD 599


>gi|34305612|gb|AAQ63613.1| GspD [Ralstonia solanacearum]
          Length = 709

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 19/193 (9%)

Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291
            GG+F   GV ++ +    +L AL    ++  L+ P L  +         GQ+   T+G 
Sbjct: 419 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 475

Query: 292 QHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347
              Y    SS   T   T    D G+ L   P +   G + ++I  E S  V G  NA  
Sbjct: 476 ---YAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLVKMQIFQESSAVVNGTQNATQ 532

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P L  IPILGALFR+    R++
Sbjct: 533 GPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPILGALFRSESKERKK 592

Query: 408 TEIFIAATPFLVK 420
           T + +   P++++
Sbjct: 593 TNLLVFLRPYILR 605


>gi|90417988|ref|ZP_01225900.1| putative general secretion pathway (GSP) protein D [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337660|gb|EAS51311.1| putative general secretion pathway (GSP) protein D [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 700

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 128/264 (48%), Gaps = 22/264 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG----V 250
           QV + VT+AEVR +   + G Q+ I     G  +   +    + +++G    V G    V
Sbjct: 440 QVAVNVTMAEVRLNDQLRYGVQYFIKSGDIGLGRDKGSVGLFRTIADGIAREVPGFNFVV 499

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATS-- 306
               S + VL+AL+  T +R L+ P+L  +  + A F  G Q   + +TV+S   A +  
Sbjct: 500 GSESSPDIVLNALDAVTDVRVLSSPSLVVMENEVAKFRVGDQIPIVTRTVNSVEDANAPI 559

Query: 307 ---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVEL 362
              V   D G++++  P +   G + + I+ E+S   +  NAG + P    R   +T+ +
Sbjct: 560 SNEVEYRDTGIIMNVRPRIAENGVVTMVIEQEISS--VTANAGSLTPVISNRSVASTISV 617

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
             G T++L GL+ +     ++GIP L+++ ++G LF +       TE+ I     L++P 
Sbjct: 618 VDGQTVLLGGLISEQSDVGRDGIPGLNRLKVVGNLFGSKSRADVRTELLI-----LIRPS 672

Query: 423 AMRDLSRPDDHYSVEDDAKAFFFN 446
            +RD     D  +V +  +A  +N
Sbjct: 673 VIRD---GRDAQNVAESLRAQMWN 693


>gi|207722789|ref|YP_002253224.1| general secretory pathway protein d [Ralstonia solanacearum MolK2]
 gi|206587973|emb|CAQ18554.1| general secretory pathway protein d [Ralstonia solanacearum MolK2]
          Length = 809

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 19/193 (9%)

Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291
            GG+F   GV ++ +    +L AL    ++  L+ P L  +         GQ+   T+G 
Sbjct: 519 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 575

Query: 292 QHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347
              Y    SS   T   T    D G+ L   P +   G + ++I  E S  V G  NA  
Sbjct: 576 ---YAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLVKMQIFQESSAVVNGTQNATQ 632

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P L  IPILGALFR+    R++
Sbjct: 633 GPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPILGALFRSESKERKK 692

Query: 408 TEIFIAATPFLVK 420
           T + +   P++++
Sbjct: 693 TNLLVFLRPYILR 705


>gi|291279644|ref|YP_003496479.1| type IV pilus assembly protein PilQ [Deferribacter desulfuricans
           SSM1]
 gi|290754346|dbj|BAI80723.1| type IV pilus assembly protein PilQ [Deferribacter desulfuricans
           SSM1]
          Length = 406

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 19/241 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF------AADFGGKFVS-----EGG 243
           QV ++  I EV +   +++G Q S   + +  +K F        D  G  V+      GG
Sbjct: 169 QVMIEAKIVEVSKTGSRELGLQWSANTNINSTNKYFPNTISIGGDTSGYMVNLPITNPGG 228

Query: 244 DFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             S+  +L  +S     +  L ALE+    + +++P +  ++ + A   SG +  YK + 
Sbjct: 229 TLSL--LLGNYSGSFILDAKLQALEQQGLAKIVSQPKIVTMNNKEAKIESGFEFHYKVID 286

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
                T V + +  + L  TP V     I L+I  + SE          P    RKA+T 
Sbjct: 287 DD--DTDVESDEAKLSLTVTPQVTPDNNILLKIVVDKSELDFSKTVDGYPLKFTRKAETY 344

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V+L  G T V+ GL+++        +P LSKIP++G LF++   + +  ++ I  TP ++
Sbjct: 345 VKLKDGETTVIGGLVQEKQSNSTSAVPGLSKIPLIGWLFKSKTNSHDLNDLVIFITPKII 404

Query: 420 K 420
           K
Sbjct: 405 K 405


>gi|83746397|ref|ZP_00943449.1| GspD [Ralstonia solanacearum UW551]
 gi|83726938|gb|EAP74064.1| GspD [Ralstonia solanacearum UW551]
          Length = 809

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 19/193 (9%)

Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291
            GG+F   GV ++ +    +L AL    ++  L+ P L  +         GQ+   T+G 
Sbjct: 519 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 575

Query: 292 QHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347
              Y    SS   T   T    D G+ L   P +   G + ++I  E S  V G  NA  
Sbjct: 576 ---YAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLVKMQIFQESSAVVNGTQNATQ 632

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P L  IPILGALFR+    R++
Sbjct: 633 GPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPILGALFRSESKERKK 692

Query: 408 TEIFIAATPFLVK 420
           T + +   P++++
Sbjct: 693 TNLLVFLRPYILR 705


>gi|319795562|ref|YP_004157202.1| type II and iii secretion system protein [Variovorax paradoxus EPS]
 gi|315598025|gb|ADU39091.1| type II and III secretion system protein [Variovorax paradoxus EPS]
          Length = 533

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 7/175 (4%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LA P L+  SG  A + +GG+     +S+  GA SV    YGV L+  P     G I   
Sbjct: 328 LASPNLSTRSGGEAKYLAGGEIPLPALSTQ-GAGSVEFKPYGVRLNIKPIADGEGNISGS 386

Query: 332 IQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           I TEVS  +P + V    +P   +R+ DT   + +G TIVL+GLL  +  +  +G+P L 
Sbjct: 387 ILTEVSSIDPSVAVQG--IPGLLIRRTDTEFNVKTGETIVLSGLLSRESSRASDGLPGLR 444

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
             P++G  FR  +   +E E+ +  TP +V   A     R +    +E D  + F
Sbjct: 445 NTPVIGRAFRADKDIDKEQEVVVFITPRVVD--AAWSQPRVERARQIEQDVGSNF 497


>gi|78049214|ref|YP_365389.1| type II secretory pathway component [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037644|emb|CAJ25389.1| type II secretory pathway component [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 759

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 137/309 (44%), Gaps = 44/309 (14%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----F 215
           AV  + T L +S    +  SS + V+  L++    QV ++  IAEV      + G    F
Sbjct: 447 AVAETNTLLVRSSAQAW--SSIRDVIERLDVM-PMQVHIEAQIAEVTLTGQLEYGVNWYF 503

Query: 216 QHSI--------TGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           ++++        TG +  PS   +    D  G   + G  ++  G     +   ++ AL+
Sbjct: 504 ENAVNAPVNADGTGGAGLPSAAGRGIWGDVSGSVTNNGLAWTFLGK----NAAAIISALD 559

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHF 318
           R T +R L  P++   +   A+   G +    + S +TG       +SV   D GV+L  
Sbjct: 560 RVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKV 619

Query: 319 TPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMP-SYRVRKADTTVELPSGG 366
            P V   G + L I  EVS P              VN+         R+  T   + +G 
Sbjct: 620 RPRVTKDGMVFLDIVQEVSTPGARPAACTSASTTTVNSAACNVDINTRRVKTEAAVQNGD 679

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425
           TI+LAGL+ D       G+P+LSK+P++GALF     N++  E+ +  TP +V+ P   R
Sbjct: 680 TIMLAGLIDDSTSDGSAGLPILSKLPVVGALFGRKTQNKDRREVIVLITPSIVRNPQEAR 739

Query: 426 DLSRPDDHY 434
           +L+   D Y
Sbjct: 740 NLT---DEY 745


>gi|207744652|ref|YP_002261044.1| general secretory pathway protein d [Ralstonia solanacearum
           IPO1609]
 gi|206596059|emb|CAQ62986.1| general secretory pathway protein d [Ralstonia solanacearum
           IPO1609]
          Length = 777

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 19/193 (9%)

Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291
            GG+F   GV ++ +    +L AL    ++  L+ P L  +         GQ+   T+G 
Sbjct: 487 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 543

Query: 292 QHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347
              Y    SS   T   T    D G+ L   P +   G + ++I  E S  V G  NA  
Sbjct: 544 ---YAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLVKMQIFQESSAVVNGTQNATQ 600

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P L  IPILGALFR+    R++
Sbjct: 601 GPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPILGALFRSESKERKK 660

Query: 408 TEIFIAATPFLVK 420
           T + +   P++++
Sbjct: 661 TNLLVFLRPYILR 673


>gi|15838128|ref|NP_298816.1| general secretory pathway protein D precursor [Xylella fastidiosa
           9a5c]
 gi|9106563|gb|AAF84336.1|AE003982_9 general secretory pathway protein D precursor [Xylella fastidiosa
           9a5c]
          Length = 775

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 38/245 (15%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G  S   +S      GK  S G  ++  G     +   +++AL++ T +R L  P++   
Sbjct: 534 GLPSAAGRSGWKSIAGKVTSNGLAWTFLGK----NAAAIINALDQVTQVRLLQTPSVFVR 589

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQT 334
           +   A+   G +    + S +TG  S +T+      D GV+L   P V   G + L I  
Sbjct: 590 NNAEATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQ 649

Query: 335 EVSEPVIGVNAGDMPS------------------YRVRKADTTVELPSGGTIVLAGLLKD 376
           EVS P      G +P+                     R+  T   + SG TI+LAGL+  
Sbjct: 650 EVSTP------GSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDS 703

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYS 435
           +  +   G+P LSK+PI+G LF     N    EI +  TP +V+ P   R+L+   D YS
Sbjct: 704 NSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLT---DEYS 760

Query: 436 VEDDA 440
            + +A
Sbjct: 761 QKFNA 765


>gi|332304529|ref|YP_004432380.1| general secretion pathway protein D [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171858|gb|AEE21112.1| general secretion pathway protein D [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 690

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 17/228 (7%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G  +S   ++ G   + A+  GG        F V  V D +    VL A+   T    L+
Sbjct: 416 GDPYSFDETTEGDYTALASLLGGV-----NGFLVGAVKDGWG--AVLQAVSTDTNSNVLS 468

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGR 327
            P LT +  + A F  G Q +     S+TG+       SV   + G+ L  TP +     
Sbjct: 469 TPHLTTLDNEEAFFIVG-QEVPIITGSTTGSNNTNPFQSVERQEIGIKLKVTPQINEGNA 527

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L I+ EVS  + G  + D+   + R+  T V +  GGTIVL GL+ DD+Q+    +P+
Sbjct: 528 VQLLIEQEVSS-ISGATSVDILINK-REIKTNVIVDDGGTIVLGGLIDDDVQESVSKVPI 585

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHY 434
           L  IP +G LF+++  ++ +  + +   P +++  V   D+SR   +Y
Sbjct: 586 LGDIPFIGNLFKSTTTSKSKRNLMVFIRPTIIRDGVTANDISRKKYNY 633


>gi|320334143|ref|YP_004170854.1| type II and III secretion system protein [Deinococcus maricopensis
           DSM 21211]
 gi|319755432|gb|ADV67189.1| type II and III secretion system protein [Deinococcus maricopensis
           DSM 21211]
          Length = 676

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 125/268 (46%), Gaps = 27/268 (10%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---G 236
           S K+  +L+    + QVT    +      ++ QI  Q  I   +   +++   D+    G
Sbjct: 409 SDKRTNSLIVRGTQAQVTQIAELIPQLDQVVPQINVQVRIQEINETAARTLGVDWNAGFG 468

Query: 237 KFVSEGGDFSVKGVLDR------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            FV       ++ + D        +    L+ALE     + + + ++T  SGQ +  T+G
Sbjct: 469 NFVVRIAQTGLQALFDPTRALAGINLGATLNALETQNMTKRVYDGSVTMQSGQRSVGTAG 528

Query: 291 GQHLYKTVSSST----GATSVTTH----------DYGVVLHFT-PTVLSPGRIGLRIQTE 335
           G     + +S+T    G   VT            DYGV L F  P V   G I LR++ +
Sbjct: 529 GAQNASSGASATIKSGGRLEVTIPSESGNIVRQIDYGVNLDFIDPQVAPDGTITLRVRGQ 588

Query: 336 VSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           V++P   +  G +P+   +   +A TT+   SG T++L+GLL  +  + + G+P LS +P
Sbjct: 589 VNQPASPITGGTLPNLLNFTNSEAQTTITFKSGQTVLLSGLLGTNESRNRTGVPFLSSLP 648

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
           ++G LF   + ++ ++++ +  T  +V+
Sbjct: 649 VIGGLFGTEQTSKTQSQLLVVITGTVVR 676


>gi|227822850|ref|YP_002826822.1| general secretion pathway protein D, GspD [Sinorhizobium fredii
           NGR234]
 gi|227341851|gb|ACP26069.1| general secretion pathway protein D, GspD [Sinorhizobium fredii
           NGR234]
          Length = 692

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 26/243 (10%)

Query: 195 QVTLKVTIAEVR-RDILK---QIGFQHSIT--GSSSGPSKSFAADFGG-KFVSEGGDFSV 247
           QV L+  IAEV   D LK   +  F+H+    G S   S + AA F G  +    GD  +
Sbjct: 426 QVFLEAVIAEVSLNDELKFGLRWYFEHNSDAFGLSDLASGAVAATFPGFNWTHLAGDAQI 485

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTVSS 300
                       L AL   T ++ ++ P L  I+ Q A    G Q           + + 
Sbjct: 486 -----------ALQALSSVTNVKVISSPNLMVINNQQAKLQVGDQVPTVTQTSTSTSSAD 534

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTT 359
           +    SV   D G++L  TP + S GR+ L IQ EVS  V    +G D P+ + RK  T 
Sbjct: 535 AAIVNSVELKDTGIILAVTPRINSSGRVMLDIQQEVSNVVETTTSGIDSPTIQQRKISTR 594

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V +  G ++ L GL+++     ++ +P+L  IP+ G  F++       TE+ I   P +V
Sbjct: 595 VVVNDGESLALGGLIQEKKSLGQKKMPVLGDIPLFGNAFKSKTDGINRTELIIFIRPRIV 654

Query: 420 KPV 422
           + V
Sbjct: 655 RDV 657


>gi|323135898|ref|ZP_08070981.1| general secretion pathway protein D [Methylocystis sp. ATCC 49242]
 gi|322398989|gb|EFY01508.1| general secretion pathway protein D [Methylocystis sp. ATCC 49242]
          Length = 817

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 133/301 (44%), Gaps = 42/301 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVR-RDILK------------QIGFQHSITGSSSGPSK 228
           ++V+  L++   +QV L+ TIAEV+  D L+              GF  S   +   P+ 
Sbjct: 509 RQVIETLDVM-PNQVFLEATIAEVKLNDTLRFGVRWFMQTHQNLFGFSSSANPAGPLPNT 567

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
               +  G  V  G +F       R F+ +  L+AL   T +  +  P+LT +  + A  
Sbjct: 568 PLGTNLLGANV--GANFPGFAYAFRAFNQQVTLNALNAITEVNVIQTPSLTVLDNRQAML 625

Query: 288 TSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
             G Q   +T+SS +       SV   + GV+L  TP +   GRI L ++ EVS      
Sbjct: 626 QVGDQIPVQTLSSVSAIGNQFNSVNYTNTGVILAITPHISESGRIMLELEQEVSNVDPNT 685

Query: 344 NAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             G + P+ + R+  T V +    +++L GL+KD   +    IP+   +P+ G LF++  
Sbjct: 686 PPGSITPTIQQRRVKTQVVVNDSESLMLGGLVKDQRGRAATQIPVAGDVPVFGNLFKDKG 745

Query: 403 FNREETEIFIAATPFLVKP-----------------VAMRDLSRPDDHYSVEDDAKAFFF 445
              ++TE+ I  TP +V+                  ++ R + RP D   +E  A+   F
Sbjct: 746 DAVDKTELVIMITPHVVRSLDEGREITEEYKRKLLDISTRAIGRPHD---IEQSARRTLF 802

Query: 446 N 446
           +
Sbjct: 803 D 803


>gi|49613540|emb|CAG76991.1| putative type II secretion system protein [Pectobacterium
           atrosepticum SCRI1043]
          Length = 393

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +  + +  T
Sbjct: 227 LMALEQESEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 286

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +L  GRI L ++   + P   +  GD     +   ++  T V +  G TIVL G+ + 
Sbjct: 287 PDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQ 346

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +     +P+LS+IP+ G LFRN        E+ I  TP L+
Sbjct: 347 QKKNSDRQVPILSEIPVFGHLFRNHTQQHTRRELVIFITPTLI 389


>gi|229220650|ref|YP_052181.2| putative outer membrane porin HofQ [Pectobacterium atrosepticum
           SCRI1043]
          Length = 383

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +  + +  T
Sbjct: 217 LMALEQESEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 276

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +L  GRI L ++   + P   +  GD     +   ++  T V +  G TIVL G+ + 
Sbjct: 277 PDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQ 336

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +     +P+LS+IP+ G LFRN        E+ I  TP L+
Sbjct: 337 QKKNSDRQVPILSEIPVFGHLFRNHTQQHTRRELVIFITPTLI 379


>gi|320451127|ref|YP_004203223.1| general secretion pathway protein [Thermus scotoductus SA-01]
 gi|320151296|gb|ADW22674.1| general secretion pathway protein [Thermus scotoductus SA-01]
          Length = 754

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 20/237 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           QV L+V I EV+ +  + +G + ++I G +   S     D G   +     F     L  
Sbjct: 532 QVNLRVRIQEVQSNFTRNLGIKWNTIAGGNVAAS---ILDSGLSLI-----FDSTRSLAA 583

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +    L AL+R    R L +   T ++ Q+A   SG   L + V +          D G
Sbjct: 584 LNILATLEALQRQGLSRALRDVNQTVLNNQTARLQSGETFLIRRVVNDR--VERVPFDIG 641

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +++  TP + + G+I L I+ EVS      PV     GD+  +  +   TT+ +  G T+
Sbjct: 642 IIVEVTPQITADGQILLNIKAEVSGNVQRNPV----DGDVDRFTKQVVTTTLRVRDGQTV 697

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           VL GL   +  Q+++G+PLL  IP++G LF+       + E+ +  T  ++K  A R
Sbjct: 698 VLGGLTSQENTQVQQGVPLLMDIPLIGELFKQRSQETTDRELLVVITADILKETASR 754


>gi|319789871|ref|YP_004151504.1| general secretion pathway protein D [Thermovibrio ammonificans
           HB-1]
 gi|317114373|gb|ADU96863.1| general secretion pathway protein D [Thermovibrio ammonificans
           HB-1]
          Length = 638

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 108/244 (44%), Gaps = 24/244 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248
           QV ++V I E+  D L Q+G +      S G    F     G    + G  S        
Sbjct: 347 QVFVEVQIVEMSMDKLLQMGVEWKFL--SRGNYVPFGGSLYGNLPLQPGYPSASPGLLLG 404

Query: 249 ------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSS 301
                 GV D      +L+A  +   +  +A P +  +  + A         Y T V   
Sbjct: 405 IAKWRDGVPD---IGLLLNAYAKEGGVNVIATPQILTLDNEEAEINISKVIPYSTGVKYD 461

Query: 302 TGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKA 356
           T    V ++DY   G+VL  TP + + G + L++  +V E V+G    D   P    R+A
Sbjct: 462 TNNNPVISYDYKDVGIVLKITPHITASGEVRLKVYEKV-EDVVGYANADQTAPITSKREA 520

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            TTV++  G T+V+ GL+K       E +P+L  IP++G LF+ +    E+T + +  TP
Sbjct: 521 KTTVDVHDGQTLVIGGLIKRKKLTTVEKVPVLGSIPVIGNLFKKTGHQIEKTNLLVFITP 580

Query: 417 FLVK 420
            +V+
Sbjct: 581 HIVR 584


>gi|170739479|ref|YP_001768134.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
 gi|168193753|gb|ACA15700.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
          Length = 797

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 131/292 (44%), Gaps = 34/292 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRD--------- 208
           A E + + +  + R QY     +K++ +L    A   QV L+  IAEV  +         
Sbjct: 474 ADETNNSLVISATRTQY-----EKILRILGRLDARPTQVLLETVIAEVTLNDKLEFGVQW 528

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV------LDRFSFETVLHA 262
            LK  G + ++  S +  S +      G  VS     +++GV      L+   F  VL+A
Sbjct: 529 FLKNGGSRFNLAQSDTAASVASGTSGAGALVSA----AMRGVPGFNYLLNDADFHVVLNA 584

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGA------TSVTTHDYGVV 315
           L   T +  L+ P +T +  ++A    G Q  + K    S  A        +   D GV+
Sbjct: 585 LRGVTRVNVLSSPNITVLDNRTARLQIGDQVPIVKQSGQSALAGNAPILNQIELKDTGVI 644

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLL 374
           L  TP V   G + L I  EVS+ V    +  + P+ R R+  T+V +  G ++ + G++
Sbjct: 645 LSVTPRVNKNGLVVLDINQEVSDVVPTTTSNINSPTIRQRRVATSVAVSDGHSLAIGGMV 704

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++  Q   E +P+L  +P++G  FRN    R  TE+ +   P +++  A  D
Sbjct: 705 QEKAQIGTEALPVLGDLPVIGPAFRNKSDLRVRTELIVFLRPKVIRGTADAD 756


>gi|87311311|ref|ZP_01093433.1| general secretion pathway protein D (precursor) [Blastopirellula
            marina DSM 3645]
 gi|87286051|gb|EAQ77963.1| general secretion pathway protein D  (precursor) [Blastopirellula
            marina DSM 3645]
          Length = 1199

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 19/213 (8%)

Query: 255  SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---VSSSTGATSVTTHD 311
            S   ++ AL++   +  LA P +  +  Q A    G +  Y T   V++     S+T  +
Sbjct: 884  SVNVLIRALQQDNRMEVLARPHVMTMDNQPAFIQVGQRVPYITDTQVTNQGTVNSITLEN 943

Query: 312  YGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDM---PSYRVRKADTTV 360
             GV+L+  P +   G + + +Q E SE        P+     GD+   P    + A TTV
Sbjct: 944  TGVILNVIPRISPDGMVVMYVQAERSEVGNEADGIPISINQNGDVIRAPRINTQTATTTV 1003

Query: 361  ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               SG TIVL GL++     +   +PLL  IP++G+LFR   F+ + +E+ I  TP +V 
Sbjct: 1004 SARSGQTIVLGGLIQKRTTVVSRRVPLLGDIPVVGSLFRYDSFDGDRSELMIILTPTVVD 1063

Query: 421  PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
              + +D+ R  +    E    ++    V +IYG
Sbjct: 1064 --SDQDVERVREQ---EMSRMSWCLADVAEIYG 1091


>gi|330444859|ref|ZP_08308514.1| general secretion pathway protein D [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489169|dbj|GAA03011.1| general secretion pathway protein D [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 677

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 26/217 (11%)

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEP 275
           I  + SG     AA  GG          VKG     S   +  ++ A++    +  L+ P
Sbjct: 418 IVTTESGDLAPMAAFLGG----------VKGAAAAISMGDWTALVTAVQANRNVNVLSTP 467

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIG 329
            +T +  Q A+  S GQ +  T  SSTG+      T+V   D G+ L  TP +     + 
Sbjct: 468 NITVLDNQEANL-SVGQEVPVTTGSSTGSNNDNPFTTVERKDVGIQLKVTPQINEGDSVQ 526

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++I+  VS+      A D+  +  R+  T+V +  G  I L GL+++   + ++ +P+L 
Sbjct: 527 MKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQKVPILG 585

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            IP+LGALFR++    E+T + +      ++P  +RD
Sbjct: 586 DIPVLGALFRSTNDQTEKTNLMV-----FIRPTILRD 617


>gi|240136813|ref|YP_002961280.1| putative General secretion pathway protein D [Methylobacterium
           extorquens AM1]
 gi|240006777|gb|ACS38003.1| putative General secretion pathway protein D [Methylobacterium
           extorquens AM1]
          Length = 792

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 130/283 (45%), Gaps = 32/283 (11%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           E + + +  + RNQY      K++ +L    A   QV L+  IAEV  +   Q G Q  +
Sbjct: 471 EANNSLVISATRNQY-----DKILRILGRLDAMPMQVLLETVIAEVTLNNELQFGVQWFL 525

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD-------FSVKGV------LDRFSFETVLHALERA 266
              +SG   + A     + V++G          + +GV      L+   F  VL+AL+  
Sbjct: 526 --KNSGSRFNLAQADTNRSVAQGTSGTDALIKAAARGVPGFNYLLNASDFNVVLNALQGV 583

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATS------VTTHDYGVVLHFT 319
           T +  ++ P +T +  ++A    G Q  + +    S  A        +   D GV+L  T
Sbjct: 584 TRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVILSVT 643

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P V   G + L I  EVS+ V+     ++  P+ R R+  T+V +  G ++ + G++++ 
Sbjct: 644 PRVNKNGLVVLDINQEVSD-VVKTTTSEINSPTIRQRRVATSVAINDGHSLAIGGMVQEK 702

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            Q   E +P+L  +PI+G  FRN    R  TE+ +   P +++
Sbjct: 703 AQITNESVPVLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIR 745


>gi|218782642|ref|YP_002433960.1| type II and III secretion system protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764026|gb|ACL06492.1| Type II and III secretion system protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 566

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 112/269 (41%), Gaps = 43/269 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----------------GSSSGPSKSFAADFGGK 237
           QV +K  I E  RD  + +G Q                     G +SG + S  A   G 
Sbjct: 278 QVHIKANIVETTRDTARDLGVQWGWMYGRYDSLGNDTDFWLTPGGNSGSAASRDAPLTGG 337

Query: 238 FVSEGGDFSVKGVLDRFSF------------------------ETVLHALERATAIRTLA 273
           + +  G   V G  +  +F                        E  L AL  A  I  L+
Sbjct: 338 YTAGTGSKGVSGQGNGINFPVDFEDAMGATMGLMFGKVGSNILEVQLSALADAGKINILS 397

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            P++T +  Q+AS  +G +  Y T++   G   V   D  ++L  TP V+  G++ +++ 
Sbjct: 398 TPSITTLDNQTASTENGTEVPYVTINED-GDREVKFKDATLMLEITPHVIDEGQMKMKVS 456

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            +  E  +  N    P    ++ +T++ + +G T+V++GL K    +   GIP L  IP 
Sbjct: 457 IKKDEVDLSRNVDGNPFILKKRTETSLIVRNGETVVISGLSKTRNTEGDTGIPWLKDIPG 516

Query: 394 LGALFRNSRFNREETEIFIAATP-FLVKP 421
           LG LF++   +    E+ I  TP  L KP
Sbjct: 517 LGYLFKSESKSEAMEEVLIFLTPTVLPKP 545


>gi|146343151|ref|YP_001208199.1| general secretion pathway protein D [Bradyrhizobium sp. ORS278]
 gi|146195957|emb|CAL79984.1| General secretion pathway protein D [Bradyrhizobium sp. ORS278]
          Length = 768

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 13/186 (6%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATSVTTHDY--- 312
           +L AL   T+++ L+ P+L  I+ Q+A+   G      T S+   S+  T V T DY   
Sbjct: 567 ILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGSATVLSSSNTVVNTIDYRNT 626

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G++L   P + + G + L ++ E+S       A   P+   RK  + + + +G T++LAG
Sbjct: 627 GIILRVVPRIAANGNVRLEVEQEISNVAAQTAASLTPTVSQRKVKSAISVANGQTVLLAG 686

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L+ +     + GIP   +IPILG  F +       TE+ I      ++P  +RD S  D 
Sbjct: 687 LISEQQTGNRNGIPGFDEIPILGDTFSHQDKKGTRTELII-----FIRPQIIRDGS--DA 739

Query: 433 HYSVED 438
           H   E+
Sbjct: 740 HQVAEE 745


>gi|296446147|ref|ZP_06888095.1| general secretion pathway protein D [Methylosinus trichosporium
           OB3b]
 gi|296256341|gb|EFH03420.1| general secretion pathway protein D [Methylosinus trichosporium
           OB3b]
          Length = 785

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 8/180 (4%)

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT------H 310
           +  L AL + T +  ++ P+LT +  + A    G Q    T++ +     VTT       
Sbjct: 573 QVTLSALNQITNVNIISTPSLTVLDNRQAVLQVGDQVPVTTLTGANTNGGVTTFNSVNYR 632

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIV 369
           D GV+L  TP +   GR+ L ++ EVS    G +A    P+ + R+  T V +    +++
Sbjct: 633 DTGVILSITPHINESGRVMLELEQEVSNVASGTSATSTTPTIKQRRVKTQVVVNDSESLM 692

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLS 428
           L GL++D   +    IP++  IP+ G  F++   +  +TE+ I  TP +V+ +A  RD++
Sbjct: 693 LGGLIQDSSSRGSSQIPVIGDIPLFGNAFKSKTNSAGKTELLIMITPHVVRTLAEARDIT 752


>gi|163883892|gb|ABY48121.1| RcpA [Yersinia ruckeri]
          Length = 304

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 126/278 (45%), Gaps = 28/278 (10%)

Query: 65  DVQDVLVSDPTK-ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           D  D + S  TK AD  +    ++ ++ K  G A   L     K +  + + +++ I+  
Sbjct: 49  DEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKKNKPIHKVAVFVDKIISKA 108

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE--LSETFLSQSGRNQ---YAN 178
           +  +R    DS I +  + +  +L G  +T ++++  +E  ++    S   R +   Y  
Sbjct: 109 KKRIRIEYPDSQININKLGEGYILTGTAQT-EEARETIEKIVANAIGSVPVRQEKWGYTI 167

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            S   + N + I   +QV +K+TIAEV +D    IG   S  G+ SG S  F     GK 
Sbjct: 168 HSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIGNVSG-SFHFTQFNAGK- 225

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                              T++ A+   +  R LAEP L+ +SG++ASF  GG+     V
Sbjct: 226 -----------------ISTLVQAINDESVARVLAEPNLSVLSGETASFLVGGE--LPIV 266

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           S++    +V+  ++G+ L+    V    RI +++  EV
Sbjct: 267 STTQNTINVSYKEFGIKLNIGAKVSESKRIRVKLDEEV 304


>gi|322830997|ref|YP_004211024.1| type IV pilus secretin PilQ [Rahnella sp. Y9602]
 gi|321166198|gb|ADW71897.1| type IV pilus secretin PilQ [Rahnella sp. Y9602]
          Length = 420

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 5/230 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +  + L+++G +   TG           +F      E   F+    L   
Sbjct: 188 QVQLAAHIVTMNSESLRELGVRWGFTGEEPITKAVRMNNFSMGMPVENPIFTAGFNLAHI 247

Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           S    +  L ALE+   +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +
Sbjct: 248 SGRILDLELTALEQEDKVDIIASPRLLTAHMQTASIKQGTEIPYQVSSGASGSTSIEFKE 307

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + +   P +   GRI L +Q   + P   I  + G+  +   ++  T V + +G TIV
Sbjct: 308 AVLGMEVMPKIQRDGRIQLALQISQNMPGRSIKQSEGEALAIDKQEIKTQVTVKNGETIV 367

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+ +   Q+    +P+L  IP++G+LF++   N +  E+ I  TP L+
Sbjct: 368 LGGIFQRKNQKTDTKVPVLGDIPVVGSLFKHQYTNEQRRELVIFITPTLI 417


>gi|332143347|ref|YP_004429085.1| general secretion pathway protein D [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553369|gb|AEB00088.1| general secretion pathway protein D [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 681

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 10/185 (5%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G +  + GV++   +  V+ A+   T    LA P LT +  + A F  G Q +     ++
Sbjct: 434 GANGLIAGVIEN-GWGAVVQAVSTDTNSNILATPHLTTMDNEEAFFIVG-QEVPIITGTT 491

Query: 302 TGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           TG+       +V   + G+ L  TP +     + L I+ EVS  V G  + D+ S   R+
Sbjct: 492 TGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQLLIEQEVS-SVSGATSVDI-SINKRE 549

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             TTV +  GGTIVL GL+ +D+Q+    +PLL  IP+LG LF+ +  ++ +  + +   
Sbjct: 550 IKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGDIPVLGHLFKTTSTSKRKRNLMVFLK 609

Query: 416 PFLVK 420
           P +V+
Sbjct: 610 PTIVR 614


>gi|154246049|ref|YP_001417007.1| general secretion pathway protein D [Xanthobacter autotrophicus
           Py2]
 gi|154160134|gb|ABS67350.1| general secretion pathway protein D [Xanthobacter autotrophicus
           Py2]
          Length = 767

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 40/290 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++ T+AEV  +     G Q  +T    G  ++  +       S+  D ++  VL  F
Sbjct: 486 QVAIEATVAEVTLNDTLAYGVQFYLTSKDLGLGRNNGSVLN-TLSSDITDQAINRVLPGF 544

Query: 255 SF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STG 303
           +           +L AL   T ++ L+ P++  +  Q A+   G +    T S+   S+ 
Sbjct: 545 NLLVGRENQPRAILDALHTVTDVKVLSNPSVVVVDNQKATLQVGDEVPVSTGSATVLSSS 604

Query: 304 ATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------------- 347
            T V T +Y   G++LH  P V   G++ L I+ E+S     V   D             
Sbjct: 605 NTVVNTIEYKNTGIILHVVPRVNVNGQVRLEIEQEISN----VTQSDPTTSGTSSNSTGL 660

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   RK  + + + SG T++LAGL+ +    +++G+P+L +IP +G  F ++    + 
Sbjct: 661 TPTVSQRKVKSVIAVASGQTVLLAGLISERHNGVRQGVPILDQIPGVGDAFAHTNGTVKR 720

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           TE+ I      ++P  +RD     D ++V ++ +A     V  + G  +A
Sbjct: 721 TELII-----FIRPQIIRDNV---DAHTVAEELRAKLRGTVTTLPGGPQA 762


>gi|119472772|ref|ZP_01614709.1| General secretion pathway protein D [Alteromonadales bacterium
           TW-7]
 gi|119444731|gb|EAW26036.1| General secretion pathway protein D [Alteromonadales bacterium
           TW-7]
          Length = 687

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 26/214 (12%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A+   T    LA P++T +  + AS   G Q +     S TG        +V  
Sbjct: 453 WGAIIQAVATDTNSNILATPSITTMDNEEASILVG-QEVPIITGSQTGTNNSNPFQTVER 511

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            + G+ L  TP +     + L I+ EVS  V G  A D+ S   R   TTV    GG +V
Sbjct: 512 QEVGIKLIVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRAIKTTVIADDGGMVV 569

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLS 428
           L GL+ +D+Q+    +PLL  IP+LG LFR++   R +  + +   P +++  V+M  LS
Sbjct: 570 LGGLIDEDVQESVSKVPLLGDIPVLGHLFRSTNTTRRKRNLIVFIRPTIIRDGVSMNKLS 629

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
                           FN+ N I G +   + +G
Sbjct: 630 ----------------FNKYNFIRGEQTKQQEDG 647


>gi|148252838|ref|YP_001237423.1| general secretion pathway protein D [Bradyrhizobium sp. BTAi1]
 gi|146405011|gb|ABQ33517.1| General secretion pathway protein D [Bradyrhizobium sp. BTAi1]
          Length = 751

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 13/186 (6%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATSVTTHDY--- 312
           +L AL   T+++ L+ P+L  I+ Q+A+   G      T S+   S+  T V T DY   
Sbjct: 550 ILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGSATVLSSSNTVVNTIDYRNT 609

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G++L   P + + G + L ++ E+S       A   P+   RK  + + + +G T++LAG
Sbjct: 610 GIILRVVPRIAANGNVRLEVEQEISNVAAQSAASLTPTVSQRKVKSAISVANGQTVLLAG 669

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L+ +     + GIP   +IPILG  F +       TE+ I      ++P  +RD S  D 
Sbjct: 670 LISEQQNGNRNGIPGFDEIPILGDTFSHQDKKGTRTELII-----FIRPQIIRDGS--DA 722

Query: 433 HYSVED 438
           H   E+
Sbjct: 723 HQVAEE 728


>gi|226226499|ref|YP_002760605.1| putative general secretion pathway protein D precursor
           [Gemmatimonas aurantiaca T-27]
 gi|226089690|dbj|BAH38135.1| putative general secretion pathway protein D precursor
           [Gemmatimonas aurantiaca T-27]
          Length = 621

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 114/255 (44%), Gaps = 17/255 (6%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS--VKGV-L 251
           QV  +VTIAE    I    GF+  I  ++        A FG   + + G  S  ++ V L
Sbjct: 355 QVLFEVTIAE----IALGRGFEFGIDWAAVNRGGDVQAQFGNPEIPDTGSTSALLRVVRL 410

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-- 309
           D      +L  +   + ++ LA P + A + + AS   G +  +  +SS+     ++   
Sbjct: 411 DGTGVRALLRTIASKSEVQVLATPEIMAANNREASILVGSKVPF--ISSTRLGNDISIDR 468

Query: 310 ----HDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELP 363
                D G  L   PT+   G I +++  EVS   P     A   P    R+A T   L 
Sbjct: 469 AVQYQDVGTKLAIIPTINDEGYISVQLLQEVSSLTPQTVAAALSAPVISTREASTRAVLR 528

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G T V+AGL+ +      +G+P+L  IP LGALF+     R+ TE+ I  TP++V+  A
Sbjct: 529 DGQTAVIAGLIGETRTTQDQGLPILKDIPWLGALFKRQSSTRQRTELAIFVTPYVVRSDA 588

Query: 424 MRDLSRPDDHYSVED 438
             D  R      +ED
Sbjct: 589 DADGIRERIRKRMED 603


>gi|330720479|gb|EGG98780.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC2047]
          Length = 332

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 104/239 (43%), Gaps = 19/239 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDR 253
           QV ++  I   R    KQ+G +   T    G S       GG    +   D  V G    
Sbjct: 94  QVQVEARIVIARDTFDKQLGIRWGFTAQGGGSSDRTLTTGGGGLAGDVAVDLGVSGATSA 153

Query: 254 F---------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                     + +  L ALE       +++P L    GQ+A   SG +  Y+  SSS GA
Sbjct: 154 LQLGFVHGNDTLDLTLSALESDGVSEVVSQPKLITADGQTARIESGVEIPYQEASSS-GA 212

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVE 361
           TSV+  D  + L  TP +    RI + ++     V E  +G+     PS   R+  T V 
Sbjct: 213 TSVSFKDAVLALEVTPQITPDDRIIMDLKVNKDSVGEIFLGI-----PSVDTREIQTQVL 267

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +G T+VL G+ + +  +     P L  IP+LG LF+      ++TE+ I  TP L+K
Sbjct: 268 VENGETVVLGGVYERETIENISKTPFLGDIPVLGELFKRKTKEDDKTELLIFITPKLIK 326


>gi|301064256|ref|ZP_07204699.1| general secretion pathway protein D [delta proteobacterium NaphS2]
 gi|300441701|gb|EFK06023.1| general secretion pathway protein D [delta proteobacterium NaphS2]
          Length = 694

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 6/168 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGV 314
           V++A ++   +  L+ P L     + A    G    Y+    +T A    +S    D GV
Sbjct: 485 VVNAYQQDRDVHILSTPQLLTTDNEEAEIMVGRNVPYQVRQETTAAELDYSSYEYKDVGV 544

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            L  TP +     + L+I  EV+  V    + A D P    R A TTV +    T+V+ G
Sbjct: 545 TLKVTPQISLERSVRLKIYQEVTRLVDNNALTASDRPETYKRLAQTTVIVKDANTVVIGG 604

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L+ DD    +  +P L  IP++G LF+ +   RE+T +FI  TP +++
Sbjct: 605 LIGDDTTHTEYKVPCLGDIPLVGWLFKGTSKKREKTNLFIFLTPRIIQ 652


>gi|124515780|gb|EAY57289.1| putative general secretion pathway protein D [Leptospirillum
           rubarum]
 gi|206602163|gb|EDZ38645.1| Putative general secretion pathway protein D [Leptospirillum sp.
           Group II '5-way CG']
          Length = 555

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 11/191 (5%)

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           V  GG F+  GV +  S  T+L+AL+  + ++TL+ P + A   Q A  T G    + T 
Sbjct: 310 VLTGGSFNYGGV-NYPSIGTLLNALQTDSDVKTLSTPEILATDSQKAKITVGEDVPFITG 368

Query: 299 SSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMP 349
            S T   +V T     + G+ L  TP +L+  R+ L ++  ++       +IG  A   P
Sbjct: 369 QSQTVGGNVMTMIQRQNVGITLDITPHILAHDRVRLNLKQTITALTNASQLIGTMAVG-P 427

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   R   T + + SG T+V+ GL+  +    K  IP L +IP+LG LF +++  ++  +
Sbjct: 428 TTTKRSTKTILTVRSGQTVVIGGLISSEKSLNKSTIPWLGEIPVLGYLFSSTQNEKKRDD 487

Query: 410 IFIAATPFLVK 420
           + I  TP++++
Sbjct: 488 LLIFLTPYIIR 498


>gi|296273826|ref|YP_003656457.1| type II and III secretion system protein [Arcobacter nitrofigilis
           DSM 7299]
 gi|296098000|gb|ADG93950.1| type II and III secretion system protein [Arcobacter nitrofigilis
           DSM 7299]
          Length = 468

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 136/275 (49%), Gaps = 24/275 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           KK +N ++I+   Q+ +K  I E+     K++G ++ + G +   S +            
Sbjct: 162 KKFINKIDISNP-QIYIKAKIVEISETKTKEVGLEYGLNGFNKYSSTNLSTFSSSFNSLS 220

Query: 231 --AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             A +F  +F + G  F +  +    +    ++ L++  AI  ++EP++  I+ + +S  
Sbjct: 221 NTAINFS-EFSTFG--FDLNSLSKGLNLSATINFLKQNQAIDVISEPSILCINNKESSIY 277

Query: 289 SGGQHLYKT--VSSSTGAT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            G    +KT   ++++G T S    + G+ L   P + S  +I L+I T + +      +
Sbjct: 278 VGETKSFKTGQTTNTSGTTESFKREEVGLRLKVKPRI-SDNKIILQINTVLEDVKESTTS 336

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            ++ + + ++  TT  L +  ++++ GL+K    Q + G+P+L  IPILG LF+N ++  
Sbjct: 337 ENLDTSK-KEVITTAILNNAESVIIGGLIKTKKFQTESGLPVLKDIPILGTLFKNEKYIN 395

Query: 406 EETEIFIAATPFLVKPVAMRDL--SRPDDHYSVED 438
           ++  + +  TP++V   +   +  S+ D   S+ED
Sbjct: 396 DKMNLVVIITPYIVPKDSTLSIIKSKVDYLQSLED 430


>gi|309780546|ref|ZP_07675293.1| general secretion pathway protein D [Ralstonia sp. 5_7_47FAA]
 gi|308920701|gb|EFP66351.1| general secretion pathway protein D [Ralstonia sp. 5_7_47FAA]
          Length = 805

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 99/215 (46%), Gaps = 16/215 (7%)

Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291
            GG F   GV ++ S    +L AL    ++  L+ P L  +         GQ+   T+G 
Sbjct: 513 NGGQF---GVFNKASGLGALLSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 569

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPS 350
                T +S T   +    D G+ L   P +   G + ++I  E S  V G  NA   P+
Sbjct: 570 YAQTGTSASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQESSAVVPGTQNATQGPT 629

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             VR  +T V    G  +VL GLL+D+ Q  ++ +P L  IPILGALFR+    R +T +
Sbjct: 630 TNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLGDIPILGALFRSENKTRVKTNL 689

Query: 411 FIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFF 444
            +   P +++   A   LS  D+ Y+   D +  F
Sbjct: 690 LVFLRPIILRTADATGALS--DNRYNYMRDTQQGF 722


>gi|241664633|ref|YP_002982993.1| general secretion pathway protein D [Ralstonia pickettii 12D]
 gi|240866660|gb|ACS64321.1| general secretion pathway protein D [Ralstonia pickettii 12D]
          Length = 803

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 99/215 (46%), Gaps = 16/215 (7%)

Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291
            GG F   GV ++ S    +L AL    ++  L+ P L  +         GQ+   T+G 
Sbjct: 511 NGGQF---GVFNKASGLGALLSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 567

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPS 350
                T +S T   +    D G+ L   P +   G + ++I  E S  V G  NA   P+
Sbjct: 568 YAQTGTSASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQESSAVVPGTQNATQGPT 627

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             VR  +T V    G  +VL GLL+D+ Q  ++ +P L  IPILGALFR+    R +T +
Sbjct: 628 TNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLGDIPILGALFRSENKTRVKTNL 687

Query: 411 FIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFF 444
            +   P +++   A   LS  D+ Y+   D +  F
Sbjct: 688 LVFLRPIILRTADATGALS--DNRYNYMRDTQQGF 720


>gi|116751076|ref|YP_847763.1| general secretion pathway protein D [Syntrophobacter fumaroxidans
           MPOB]
 gi|116700140|gb|ABK19328.1| general secretion pathway protein D [Syntrophobacter fumaroxidans
           MPOB]
          Length = 793

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 127/284 (44%), Gaps = 32/284 (11%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----FQH 217
           E++   + ++    YA    KK +  L+I     V ++V IAEV      + G    F H
Sbjct: 492 EVNNAIVVRANATDYAKI--KKTIEALDIL-PRAVLIEVIIAEVALTKDFEYGLKWYFSH 548

Query: 218 SITGSSSGPSK--------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           +  G+  G             A +  G  +S  G  ++  V +      VL  L   T +
Sbjct: 549 AEVGAGVGQGSLNGLGGVSDIALNLAG--ISSAGGMALAWVSNAKDMAGVLSWLSSKTKV 606

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------THDY---GVVLHFTP 320
           + L+ PTL A   + A+   GG+    +  S TG TS T      T +Y   G +L  TP
Sbjct: 607 KILSTPTLLATDNKEAAIQVGGRTPVPS-GSYTGGTSTTLDTVFSTIEYEETGTILTVTP 665

Query: 321 TVLSPGRIGLRIQTEV----SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            + + G + L ++  +    +   +GVN    P++  R   TT+    G T+V+ G++ +
Sbjct: 666 HINAGGLVRLEVEQTIRRVGANATVGVN-NTAPTFTERNLKTTLLAQDGSTVVIGGIIDE 724

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +    G P+L  +PI+G LF     +RE TE+ IA TP +V+
Sbjct: 725 IDRDTTTGAPMLVDVPIIGPLFGQKGKSRERTELLIAITPRVVE 768


>gi|188993080|ref|YP_001905090.1| Type II secretory pathway component [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734840|emb|CAP53051.1| Type II secretory pathway component [Xanthomonas campestris pv.
           campestris]
          Length = 759

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 122/278 (43%), Gaps = 49/278 (17%)

Query: 195 QVTLKVTIAEVRRDILKQIG----FQHSIT-----GSSSGPSKSFAA------DFGGKFV 239
           QV ++  IAEV      Q G    F++++T       S GP+   AA      D  G   
Sbjct: 479 QVHIEAQIAEVTLTGRLQYGVNWYFENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGSVT 538

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S G  ++  G     +   ++ AL++ T +R L  P++   +   A+   G +    + S
Sbjct: 539 SNGVAWTFLGK----NAAAIISALDQVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTS 594

Query: 300 SSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------------- 339
            +TG       +SV   D GV+L   P V   G + L I  EVS P              
Sbjct: 595 INTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTT 654

Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 N  D+ + RV+   T   + +G TI+LAGL+ D       GIP LSK+P++GAL
Sbjct: 655 VNSAACNV-DINTRRVK---TEAAVQNGDTIMLAGLIDDSTTDGSNGIPFLSKLPVVGAL 710

Query: 398 FRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434
           F     N +  E+ +  TP +V+ P   RDL+   D Y
Sbjct: 711 FGRKTQNSDRREVIVLITPSIVRNPQDARDLT---DEY 745


>gi|21230145|ref|NP_636062.1| general secretion pathway protein D [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769864|ref|YP_244626.1| general secretion pathway protein D [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|129748|sp|P29041|GSPD_XANCP RecName: Full=General secretion pathway protein D; Flags: Precursor
 gi|155391|gb|AAA27615.1| XpsD precursor [Xanthomonas campestris]
 gi|21111677|gb|AAM39986.1| general secretion pathway protein D [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575196|gb|AAY50606.1| general secretion pathway protein D [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 759

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 119/274 (43%), Gaps = 41/274 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIG----FQHSIT-----GSSSGPSKSFAA------DFGGKFV 239
           QV ++  IAEV      Q G    F++++T       S GP+   AA      D  G   
Sbjct: 479 QVHIEAQIAEVTLTGRLQYGVNWYFENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGSVT 538

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S G  ++  G     +   ++ AL++ T +R L  P++   +   A+   G +    + S
Sbjct: 539 SNGVAWTFLGK----NAAAIISALDQVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTS 594

Query: 300 SSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-- 351
            +TG       +SV   D GV+L   P V   G + L I  EVS P     A    +   
Sbjct: 595 INTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTT 654

Query: 352 ----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                       R+  T   + +G TI+LAGL+ D       GIP LSK+P++GALF   
Sbjct: 655 VNSAACNVDINTRRVKTEAAVQNGDTIMLAGLIDDSTTDGSNGIPFLSKLPVVGALFGRK 714

Query: 402 RFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434
             N +  E+ +  TP +V+ P   RDL+   D Y
Sbjct: 715 TQNSDRREVIVLITPSIVRNPQDARDLT---DEY 745


>gi|315125823|ref|YP_004067826.1| general secretion pathway protein D [Pseudoalteromonas sp. SM9913]
 gi|315014337|gb|ADT67675.1| general secretion pathway protein D [Pseudoalteromonas sp. SM9913]
          Length = 688

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A+   T    LA P++T +  + AS   G Q +     S TG+       +V  
Sbjct: 454 WGAIVQAVSTDTNSNILATPSITTMDNEEASILVG-QEVPIITGSQTGSNNENPFQTVER 512

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            + G+ L  TP +     + L I+ EVS  V G  A D+ S   R   TTV    GG +V
Sbjct: 513 QEVGIKLKVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRAIKTTVMADDGGMVV 570

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLS 428
           L GL+ +D+Q+    +PLL  IPILG LF+++   + +  + +   P +++  ++M  LS
Sbjct: 571 LGGLIDEDVQESVSKVPLLGDIPILGHLFKSTNTTKRKRNLIVFIRPTIIRDGISMNKLS 630


>gi|307731499|ref|YP_003908723.1| general secretion pathway protein D [Burkholderia sp. CCGE1003]
 gi|307586034|gb|ADN59432.1| general secretion pathway protein D [Burkholderia sp. CCGE1003]
          Length = 782

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 33/221 (14%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVS 299
           F V+G         +L AL +      L+ P L  +  + A    G         Y  ++
Sbjct: 488 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNIPIQTGSYSNLT 541

Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYR 352
           S T +++  T+D    G+ LH  P +   G + L++ TE S  V G          P + 
Sbjct: 542 SGTASSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVNGTTNATTNPAGPQFT 601

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +TV   +G  IVL GL++D+ Q     +PLL  IP +G LFR+ + NR +T + +
Sbjct: 602 KRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKNRNKTNLMV 661

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
               FL +PV + D           D A+A   NR + I G
Sbjct: 662 ----FL-RPVIIND----------RDTAQAVTSNRYDYIQG 687


>gi|291286428|ref|YP_003503244.1| general secretion pathway protein D [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883588|gb|ADD67288.1| general secretion pathway protein D [Denitrovibrio acetiphilus DSM
           12809]
          Length = 616

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 19/208 (9%)

Query: 215 FQHSITGSSSGPSKSFAADFG----GKFVS-EGGDFSVKGVLDRFSFETVLHALERATAI 269
           FQ S+    S    + ++ F     G  V+ EG  F   G+L  F        ++ A+ I
Sbjct: 378 FQSSVLDGDSPNFGALSSGFNLGILGDIVTYEGVSFPTLGILANF--------VKTASGI 429

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS-STGATSVTTHDY---GVVLHFTPTVLSP 325
             L+ P +  +  + A    G    + T +   +    V ++DY   GV L+  P + S 
Sbjct: 430 NILSNPQILTLDNEEAEIFVGENRPFLTSTKYDSNNNPVQSYDYRDVGVKLNIVPQISSN 489

Query: 326 GRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             I L+I+ EV + V G  A  + P    R   T V+L  G  +V++GLLKDD +     
Sbjct: 490 DTITLKIEQEV-KKVSGATADVVAPVTLTRSTKTKVKLKDGAIMVISGLLKDDSETYNSS 548

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFI 412
           +P LS IP++G LF+N   + E+T + +
Sbjct: 549 VPWLSSIPVIGWLFKNKNSSSEKTNMMV 576


>gi|226939985|ref|YP_002795058.1| type II and III secretion system protein [Laribacter hongkongensis
           HLHK9]
 gi|226714911|gb|ACO74049.1| type II and III secretion system protein [Laribacter hongkongensis
           HLHK9]
          Length = 616

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 124/282 (43%), Gaps = 50/282 (17%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248
           QV ++ TIAEV      Q G   S  G   G +  FA++F G  +S+      +      
Sbjct: 305 QVMIEATIAEVELTRDYQAGVDWSRIGD--GKNWQFASNFSGNGLSQNAGNPAQYFGTVG 362

Query: 249 ------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                       G+    S    +  LE     R L+ P L A++ QSA         Y 
Sbjct: 363 QVLQGSTTPAFTGLYRSGSLSAAIRLLEGFGRTRVLSSPKLMALNNQSAILKVVDNVPYF 422

Query: 297 TVS------------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------- 337
           T+             ++T  + + +   G+V++ TP +   GR+ L ++  ++       
Sbjct: 423 TLKIKYEPGTTTNPPTTTYESELHSVPVGIVMNITPQIAPDGRVSLNVRPTITNITGFQR 482

Query: 338 EPVIGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +P + +   D          +P  +VR+ ++T+ L SG   VL GL++D I +   GIPL
Sbjct: 483 DPAVQLVLADKGASDPGLGLVPQLQVRELESTLRLQSGEIGVLGGLIQDKIDKDSNGIPL 542

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLS 428
           LS++P++GALF   + +  +TE+ +   P LV +P    DLS
Sbjct: 543 LSQLPVVGALFGLRKESARKTELVVFLKPTLVSQPSLTTDLS 584


>gi|91200092|emb|CAJ73135.1| similar to general secretion pathway protein D [Candidatus Kuenenia
           stuttgartiensis]
          Length = 668

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 27/211 (12%)

Query: 233 DFGGKFVSEGGDFSVKGVLD-----------------RFSFETVLHALERATAIRTLAEP 275
           D+G +++  G +  V GV D                 + SFE ++  L  ++  + L+ P
Sbjct: 433 DYGTEWLWSGSNLQVYGVGDIARAAGNAAVQFTNTFAKGSFEILIDILATSSNAKILSAP 492

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGL 330
            +     Q AS   G +    T S     T++T       D G++L  TP +   G I L
Sbjct: 493 HILVRDEQPASIQVGEEVPILTSSGQQTGTTITFEQVQYRDTGIILTVTPHIAENGLITL 552

Query: 331 RIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            +  EVS   +   GV     P++  R+  T++ + SG TI L G+++   ++  + IPL
Sbjct: 553 EVNQEVSNAKLTDTGVEKS--PTFSTRQVQTSLVIKSGHTIGLGGIIEQKNEKEVKKIPL 610

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFL 418
           L  IP LG LF+ +    + TE+ +  TP++
Sbjct: 611 LGDIPYLGNLFKATSLIDKRTELIMLITPYI 641


>gi|308047936|ref|YP_003911502.1| general secretion pathway protein D [Ferrimonas balearica DSM 9799]
 gi|307630126|gb|ADN74428.1| general secretion pathway protein D [Ferrimonas balearica DSM 9799]
          Length = 723

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 12/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTH 310
           F  ++ A+   +    LA P++T +  Q ASF  G +    T S+S        T+V   
Sbjct: 452 FGALIQAVAADSNSNVLATPSITTLDNQEASFIVGDEVPVITGSTSGSNNDNPFTTVERK 511

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + G+ L  TP +     + L I+ EVS  V G  A D+ ++  R   TTV   SG T+VL
Sbjct: 512 EVGIKLKVTPQINEGNAVQLEIEQEVSN-VNGRTAVDV-TFGKRTLTTTVLADSGETVVL 569

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GLL +D+Q+    +PLL  IP++G LF ++   + +  + I      +KP  +RD
Sbjct: 570 GGLLNEDVQESVSKVPLLGDIPVIGHLFSSTSSKKTKRNLMI-----FIKPTIIRD 620


>gi|332284397|ref|YP_004416308.1| general secretion pathway protein D [Pusillimonas sp. T7-7]
 gi|330428350|gb|AEC19684.1| general secretion pathway protein D [Pusillimonas sp. T7-7]
          Length = 792

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 111/256 (43%), Gaps = 32/256 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSF--AADFGGKFVSEGGDFS---- 246
           QV ++  I EV  D   + G Q    G+  SSG + SF   A+F G  ++  G  +    
Sbjct: 477 QVLVESLIVEVSTDKAAEFGIQWMAGGNDLSSG-NTSFMGGANFNGSGINPSGITTIDAL 535

Query: 247 --------VKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSG--- 290
                   VKG +D    E      +  ALE       L+ P L  +  + AS   G   
Sbjct: 536 AQGLSLGVVKGTVDILGTEILNLGVLARALESKGDANVLSTPNLMTLDNEEASIIVGRTV 595

Query: 291 ----GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--N 344
               GQ+      +S    +VT  D G+ L   P +   G + + I  EVS  + G   +
Sbjct: 596 PFVTGQYTTSADGASNPFQTVTREDVGLTLRIRPQISEGGTVKMAIYQEVSS-IDGAASS 654

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           AG     R R  +T V +  G  IVL GLL+D I      +P+L  IP+LG LFR  + +
Sbjct: 655 AGAGLITRKRALETNVLVDDGQIIVLGGLLEDTISDSTSAVPVLGDIPVLGNLFRYDKRS 714

Query: 405 REETEIFIAATPFLVK 420
           R +T + +   P +V+
Sbjct: 715 RTKTNLMVFLRPHIVR 730


>gi|283955079|ref|ZP_06372582.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793446|gb|EFC32212.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 470

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 19/198 (9%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   SS G  + T
Sbjct: 267 GLRANLNFDSIVNFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326

Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352
           T     ++Y    G++L+  P +   G+I LRI   +S+   P       +     P   
Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    + + TEI  
Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLDSKATEIVF 446

Query: 413 AATPFLVKPV---AMRDL 427
             TP +V      +++DL
Sbjct: 447 IITPSIVDSTNAPSLKDL 464


>gi|221134989|ref|ZP_03561292.1| general secretion pathway protein D [Glaciecola sp. HTCC2999]
          Length = 693

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 11/194 (5%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G +  + G+++   +  V+ A+   T    LA P LT +  + A F  G Q +     +S
Sbjct: 446 GANGMIAGIIEN-GWGAVVQAVSTDTNSNILATPHLTTMDNEEAFFIVG-QEVPIITGTS 503

Query: 302 TGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           TG+       +V   + G+ L  TP +     + L I+ EVS  V G  + D+ S   R+
Sbjct: 504 TGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQLLIEQEVSS-VSGATSVDI-SINKRE 561

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             TTV +  GGTIVL GL+ +D+Q+    +PLL  IP +G LF+ +  ++ +  + +   
Sbjct: 562 IKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGDIPFVGHLFKTTTSSKRKRNLMVFLR 621

Query: 416 PFLVKP-VAMRDLS 428
           P +V+  V M ++S
Sbjct: 622 PTIVRDGVTMNEIS 635


>gi|309389153|gb|ADO77033.1| type II and III secretion system protein [Halanaerobium praevalens
           DSM 2228]
          Length = 438

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 23/232 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + Q+ +K  + E+ R  +K++G           PS+           +E GD        
Sbjct: 174 QKQIMIKARVEEISRTEIKELGI---------NPSQLTELKI---IKNEAGDLEEL---- 217

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTH 310
           + ++   L +L        LA P+L  +  + A    G Q   K   V S    +++   
Sbjct: 218 KPNWPDTLRSLNERGLSNILANPSLMTLDRKKAKLIIGDQIPVKLERVESEKTVSTINYI 277

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIV 369
           + G+VL F P +++   + L I+  V+   +G V A  +P+   R A+TTV L +  T+ 
Sbjct: 278 EAGIVLEFLPKIINEKEVLLEIKPSVNS--LGQVLADGLPAVNSRSAETTVILENDQTLA 335

Query: 370 LAGLLK-DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + GL+K D+++ +KE +P+L+ +P+LG LF     N  ETE+ I  TP +++
Sbjct: 336 IGGLIKKDELKSIKE-VPILADLPLLGKLFSAEEKNDIETELIIFITPKIIE 386


>gi|209756638|gb|ACI76631.1| putative transport protein [Escherichia coli]
 gi|320645172|gb|EFX14188.1| outer membrane porin HofQ [Escherichia coli O157:H- str. 493-89]
 gi|320650483|gb|EFX18949.1| outer membrane porin HofQ [Escherichia coli O157:H- str. H 2687]
          Length = 412

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 2/150 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L A   Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+
Sbjct: 260 IASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLK 319

Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +    + P  V+    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL 
Sbjct: 320 LHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLG 379

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP  G LFR+     E  E+ +  TP LV
Sbjct: 380 DIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|186474451|ref|YP_001863422.1| general secretion pathway protein D [Burkholderia phymatum STM815]
 gi|184198410|gb|ACC76372.1| general secretion pathway protein D [Burkholderia phymatum STM815]
          Length = 717

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 32/225 (14%)

Query: 249 GVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLYKT 297
           G+L RF        +L AL +++    L+ P L  +  + A    G       G +   T
Sbjct: 468 GLLHRFGNVFGLGGLLQALSQSSDANILSTPNLITLDNEEAKIVVGSNVPVVTGSYATPT 527

Query: 298 VSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352
            +++T  T+  T    D G+VLH  P +   G I L+I +E S  +P    N G +   +
Sbjct: 528 ANAATSVTAFNTFDRQDVGIVLHVKPQITDGGIIKLQIYSEDSSVDPTSTNNPGGVTIIK 587

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +TV    G  IVL GL++D+       +PLL  +P +G LFR+   +R +T + +
Sbjct: 588 -RSVQSTVLSDDGEIIVLGGLMQDNYSNGNSKVPLLGDVPWIGQLFRSEEKSRTKTNLMV 646

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
                 ++PV + D           D A+A   NR + I G + A
Sbjct: 647 -----FLRPVIINDW----------DTAQAVTSNRYDYIQGVQGA 676


>gi|307545360|ref|YP_003897839.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
 gi|307217384|emb|CBV42654.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
          Length = 749

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 20/251 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           QV ++  I EVR       G Q     + G++S PS + A+   G   +  G  S+ G  
Sbjct: 482 QVQIETRILEVRLTGALNQGVQWYLGQLAGNASNPSVANASGSQGALGA--GGVSLGGSS 539

Query: 252 DRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSS 301
             +SF     +  L AL+     + L+ P+L  ++ Q A    G      Q    T  + 
Sbjct: 540 MFYSFVGDNLQVALRALQTRGLTQVLSAPSLVVLNNQQAQIQVGDNIPVNQTTVNTADAD 599

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADT 358
           T  +SV     GV+L   P +   G + + IQ +VS+      G  A + P    R   T
Sbjct: 600 TTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADDNAAGSTASN-PRISTRAVST 658

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V + SG T++L GL++ +  + +  +P LS IP LG LF +   +R+ TE+ +  TP +
Sbjct: 659 QVAVQSGQTVLLGGLIQQNNAESETRVPGLSSIPGLGRLFGSEARDRDRTELIVLITPKV 718

Query: 419 V-KPVAMRDLS 428
           V  PV  R+++
Sbjct: 719 VNNPVQAREIT 729


>gi|227329158|ref|ZP_03833182.1| putative outer membrane porin HofQ [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 424

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +  + +  T
Sbjct: 258 LMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 317

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +L  GRI L ++   + P   +  GD     +   ++  T V +  G TIVL G+ + 
Sbjct: 318 PDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQ 377

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +     +PLL ++P+ G LFRN        E+ I  TP L+
Sbjct: 378 QKKNSDRQVPLLGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420


>gi|13475694|ref|NP_107261.1| general secretion proteinD [Mesorhizobium loti MAFF303099]
 gi|14026450|dbj|BAB53047.1| general secretion protein D [Mesorhizobium loti MAFF303099]
          Length = 708

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 15/183 (8%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGA------TSV 307
           + +  L+AL + T +  ++ PT+ A++ Q A    G Q  +    S  TG        SV
Sbjct: 495 NIQVTLNALSKITDVNVISAPTIMALNNQKAILQVGDQVPILTQQSQDTGNGSAPIINSV 554

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSG 365
              D GV+L  TP + + GR+ L IQ EVS  V   ++ D+  P+ + RK  T V +  G
Sbjct: 555 QMKDTGVILTVTPRINNAGRVMLDIQQEVSN-VTKTDSSDIDSPTIQQRKVQTRVLVNDG 613

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            ++ L GL++ +    +  +P+L  IPILG  F+        TE+ I      ++P  +R
Sbjct: 614 ESLALGGLIQQNNSVDRSQVPILGDIPILGNAFKQKDDTIRRTELII-----FIRPHVVR 668

Query: 426 DLS 428
           D++
Sbjct: 669 DIN 671


>gi|27381133|ref|NP_772662.1| general secretion pathway protein D [Bradyrhizobium japonicum USDA
           110]
 gi|27354300|dbj|BAC51287.1| blr6022 [Bradyrhizobium japonicum USDA 110]
          Length = 793

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHD 311
           S   VL AL   T ++ L+ P+L  +  Q+A+   G Q  + T +++      T V T D
Sbjct: 585 SPRVVLDALHGITNVKVLSNPSLVVLDNQAATLQVGDQVPFSTGTATVLTANNTVVNTID 644

Query: 312 Y---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           Y   G++L   P   + G + L I+ E+S    G      P+   R+  +++ + SG T+
Sbjct: 645 YKNTGIILRVLPRANANGNVVLDIEQEISSVAAGSANSLTPTISQRRVKSSIAVTSGQTV 704

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +LAGL+ +   + ++G+P+L  IP +G  F +    R  TE+ +   P ++K
Sbjct: 705 LLAGLISETENRQRQGLPILDSIPGMGDAFSHQTTARARTELILFIRPTVIK 756


>gi|77359203|ref|YP_338778.1| general secretion pathway protein D [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874114|emb|CAI85335.1| General secretion pathway protein D [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 688

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A+   +    LA P++T +  + AS   G Q +     S TG+       +V  
Sbjct: 454 WGAIVQAVSTDSNSNILATPSITTMDNEEASILVG-QEVPIITGSQTGSNNTNPFQTVER 512

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            + G+ L  TP +     + L I+ EVS  V G  A D+ S   R   TTV    GG +V
Sbjct: 513 QEVGIKLKVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRSIKTTVMADDGGMVV 570

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLS 428
           L GL+ +D+Q+    +PLL  IPILG LF+++   R +  + +   P +++  ++M  LS
Sbjct: 571 LGGLIDEDVQESVSKVPLLGDIPILGHLFKSTNTTRRKRNLIVFIRPTIIRDGISMNKLS 630


>gi|89074487|ref|ZP_01160964.1| putative type II secretory pathway, component EpsD [Photobacterium
           sp. SKA34]
 gi|89049775|gb|EAR55325.1| putative type II secretory pathway, component EpsD [Photobacterium
           sp. SKA34]
          Length = 672

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 26/222 (11%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIR 270
           G  +S   + SG     AA  GG          +KG     +   +  ++ A+++   + 
Sbjct: 408 GKPYSYETTESGDLAPMAAFLGG----------IKGAAAAITMGDWTALVTAIKQNRNVN 457

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLS 324
            L+ P +T +  Q A+  S GQ +  T  S TG+      T+V   D G+ L  TP +  
Sbjct: 458 VLSTPNVTVLDNQEANL-SVGQEVPVTTGSQTGSNNDNPFTTVERKDVGIQLKVTPQINE 516

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + ++I+  VS+      A D+  +  R+  T+V +  G  I L GL+++   + ++ 
Sbjct: 517 GDSVQMKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQK 575

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +P+L  IP+LGALFR++    E+T + +      ++P  +RD
Sbjct: 576 VPILGDIPVLGALFRSTNNQTEKTNLMV-----FIRPTILRD 612


>gi|330722019|gb|EGG99947.1| General secretion pathway protein D [gamma proteobacterium
           IMCC2047]
          Length = 338

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 21/277 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---AADFGGKFVSEGGDFSVKGVL 251
           QV ++  I EV   +L  +G Q   +  S+G   +F    A+     +   G     G  
Sbjct: 26  QVLVEAVIVEVNDSVLDDLGVQWQTSTPSNGEFSAFNAIPANISTPALPTLGSGLTLGYF 85

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLYKTVSSSTGA 304
              S   ++ ALE  T    L+ PT+  +  + A    G       G    ++  +S   
Sbjct: 86  KDNSLRALIRALESDTKANVLSTPTIVTLDNEEAEILVGSNVPFITGSETNESSPTSNPF 145

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            ++   D G+ L   P +     + L I QT  S     VN  D+ + + R   T V L 
Sbjct: 146 QTIQRQDIGITLKVKPRINENDSMTLAIEQTVESIATSAVNTADIVTNK-RNIKTNVLLE 204

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
               +VL GL+ D+   ++  +P+L  IP+LG LFR++    E+  + +      + P+ 
Sbjct: 205 DDQVLVLGGLISDESSNVESKVPVLGHIPVLGRLFRSTSTKVEKKNLMV-----FIHPMI 259

Query: 424 MRDLSRPD----DHYSVEDDAKAFFFNRVNKIYGPKE 456
           + DL R +    D Y+   + +  +    ++I+ PK+
Sbjct: 260 LSDLERSNKLTSDRYNSMRNKQQQYNGDRDRIFIPKQ 296


>gi|77164279|ref|YP_342804.1| general secretion pathway protein D [Nitrosococcus oceani ATCC
           19707]
 gi|254435433|ref|ZP_05048940.1| general secretion pathway protein D [Nitrosococcus oceani AFC27]
 gi|76882593|gb|ABA57274.1| General secretion pathway protein D [Nitrosococcus oceani ATCC
           19707]
 gi|207088544|gb|EDZ65816.1| general secretion pathway protein D [Nitrosococcus oceani AFC27]
          Length = 833

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 22/184 (11%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGV 314
           VL  L   T ++ L+ P L  +  Q+A    G Q   +T S+        T +   D GV
Sbjct: 596 VLDTLSSQTKVKVLSSPQLLVLDNQTAEIRVGDQIPIQTGSTIGIGGNSTTRIQFRDTGV 655

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGD------------MPSYRVRKA 356
           +L  TP V + GR+ + +  EV++      P     +GD             P++  R  
Sbjct: 656 LLTVTPRVNAGGRVTMELTQEVTDVGGTKLPTSAAPSGDGDDDNNNQTVGNNPTFLQRSF 715

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            + V + SG TIVL GL++D+ +    G+P L K+P++G LF  +  ++  TE+ +  TP
Sbjct: 716 RSVVTVQSGDTIVLGGLIRDNERFSDSGLPFLHKLPLIGPLFGATAKSKSRTELIVLMTP 775

Query: 417 FLVK 420
            +V+
Sbjct: 776 RVVR 779


>gi|30248714|ref|NP_840784.1| general (type II) secretion pathway (GSP) D protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30180309|emb|CAD84616.1| General (type II) secretion pathway (GSP) D protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 697

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 89/170 (52%), Gaps = 8/170 (4%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATSVTT---HD 311
           VL+AL+  T ++ L+ P ++ ++ Q AS   G Q    T +S     +GA  + T    D
Sbjct: 493 VLNALQSKTEVKILSAPKISVLNNQKASLQVGDQVPIVTQTSQGTVVSGAPVINTIQMRD 552

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVL 370
            GV+L   P V   G + L +  EVSE     ++G D P+ + RK  + +    G T+ L
Sbjct: 553 TGVILEVIPRVNDNGNVILDVTQEVSEVAQTTSSGIDSPTIQRRKIHSVIATRDGFTVAL 612

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            GL++++      G+PL+  +P++G LF+++  +   TE+ +   P +++
Sbjct: 613 GGLIRENGSAGNSGVPLIKDVPVIGNLFKSNTSDIRRTELVVLLVPHVMR 662


>gi|70733953|ref|YP_257593.1| type IV pilus biogenesis protein PilQ [Pseudomonas fluorescens
           Pf-5]
 gi|68348252|gb|AAY95858.1| type IV pilus biogenesis protein PilQ [Pseudomonas fluorescens
           Pf-5]
          Length = 583

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 9/217 (4%)

Query: 214 GFQHSITGSSS------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           G Q++ +GSSS      G S S   D G    + G    +  + D    +  L A+E+  
Sbjct: 366 GVQNAASGSSSIGAPGSGGSNSPFVDLGASAHTSG--IGIAYITDNVLLDLELTAMEKTG 423

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +++P +     ++A    G +  Y+  SSS GATSV+  +  + L  TP +    R
Sbjct: 424 NGEIVSQPKVVTSDKETAKILKGTEIPYQEASSS-GATSVSFKEASLSLEVTPQITPDNR 482

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I + ++    EP       D+P  +  + +  V +  G TIV+ G+  +   ++ + +P 
Sbjct: 483 IIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGATIVIGGVFSNTQSKVVDKVPF 542

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           L  +P LG LFR    + +++E+ +  TP ++   A+
Sbjct: 543 LGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAI 579


>gi|323527881|ref|YP_004230034.1| general secretion pathway protein D [Burkholderia sp. CCGE1001]
 gi|323384883|gb|ADX56974.1| general secretion pathway protein D [Burkholderia sp. CCGE1001]
          Length = 785

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 33/221 (14%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVS 299
           F V+G         +L AL +      L+ P L  +  + A    G         Y  ++
Sbjct: 489 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSNLT 542

Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPS---YR 352
           S   +++  T+D    G+ LH  P +   G + L++ TE S  V G  NA   P+   + 
Sbjct: 543 SGNASSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVNGTTNAATNPAGPQFT 602

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +TV   +G  IVL GL++D+ Q     +PLL  IP +G LFR+ + NR +T + +
Sbjct: 603 KRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKNRNKTNLMV 662

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
                 ++PV + D           D A+A   NR + I G
Sbjct: 663 -----FLRPVIISD----------RDTAQAVTSNRYDYIQG 688


>gi|260424842|ref|ZP_05733440.2| bacterial type II and III secretion system protein [Dialister
           invisus DSM 15470]
 gi|260403342|gb|EEW96889.1| bacterial type II and III secretion system protein [Dialister
           invisus DSM 15470]
          Length = 449

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVTTHDYG 313
           F   L+AL      R LA P +  ++G+ A    G +   + + V +    T+    D G
Sbjct: 283 FRANLNALVSTGKARILARPNVVTMNGREAEILIGNKIPVIVEHVDNGVRTTTTEYRDAG 342

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLA 371
           + L +TP + + G I   +  EVS P +     +M +YR+  R+A+T V L SG  + + 
Sbjct: 343 IKLTYTPRISADGEITANVNAEVSTPYL---VPEMRAYRIITRQANTLVRLRSGDMLTIG 399

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           GL+  +  +    +P+L  IP+LG LF++   + EE+EI I
Sbjct: 400 GLIDKEENKTFRKVPILGDIPLLGKLFQSKSRSVEESEIVI 440


>gi|212217864|ref|YP_002304651.1| type 4 pili secretin (outer membrane porin) [Coxiella burnetii
           CbuK_Q154]
 gi|212012126|gb|ACJ19506.1| type 4 pili secretin (outer membrane porin) [Coxiella burnetii
           CbuK_Q154]
          Length = 353

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 16/192 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            +  L ALE+    + L+ P L   + Q+A   SG    Y+   +  G TSVT +   + 
Sbjct: 168 LDLTLSALEQEGRAQVLSCPELMTNNRQTAIIESGEAIPYQE-KTGQGNTSVTFNKATLR 226

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP VL   RI L++     + +       +P+ + ++  T V + +  T+VL G+ +
Sbjct: 227 LKVTPVVLPGNRILLQLNVN-QDKMSSFLVNGVPTIQTQQLTTKVMVNNQETVVLGGIYE 285

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
              QQ + GIP L KIPILG LFR+ + + E  ++ I  TP ++ P              
Sbjct: 286 QSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISP-------------- 331

Query: 436 VEDDAKAFFFNR 447
            E  +  + FNR
Sbjct: 332 YEKKSHQYLFNR 343


>gi|262192447|ref|ZP_06050599.1| general secretion pathway protein D [Vibrio cholerae CT 5369-93]
 gi|262031711|gb|EEY50297.1| general secretion pathway protein D [Vibrio cholerae CT 5369-93]
          Length = 707

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 121/257 (47%), Gaps = 23/257 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKS 229
           + QYA+   ++++ LL    +   QV L+ T+AEV+ +    +G + +IT G  +G S  
Sbjct: 439 QGQYADY--QRLIELLKFVDQRPRQVLLQATVAEVKVEDGFTLGTEFNITSGDITGGSNG 496

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             A+         G+ ++ GV    + +    AL+   A + L+ P + A+  + A  + 
Sbjct: 497 LIAN--------AGNLNLNGVFGDVTAK-FTAALDSGKA-QVLSSPRVIAMDQEPARISI 546

Query: 290 GGQHLYKTVSSSTG---ATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           G Q   KT   S G   + +  T+ Y   G+ L  TPT+   G + L I  EVS    GV
Sbjct: 547 GEQIQVKTGEVSGGGDDSKATVTYQYVDVGITLDITPTINQNGLVELSISQEVSSQ--GV 604

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
             GD      R   T +   SG TI + GL+  D    +  +P+L  IP++G LF+    
Sbjct: 605 ITGDSIPINKRSLQTRMLADSGDTIYMGGLISKDNNNSENKVPILGDIPLIGNLFKYRVE 664

Query: 404 NREETEIFIAATPFLVK 420
            +  TE+ +  TP+++ 
Sbjct: 665 KQNSTELVLLITPYVIN 681


>gi|153206247|ref|ZP_01945510.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165919273|ref|ZP_02219359.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii RSA 334]
 gi|120577377|gb|EAX34001.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165916996|gb|EDR35600.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii RSA 334]
          Length = 349

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 22/195 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            +  L ALE+    + L+ P L   + Q+A   SG    Y+   +  G TSVT +   + 
Sbjct: 164 LDLTLSALEQEGRAQVLSCPELMTNNRQTAIIESGEAIPYQE-KTGQGNTSVTFNKATLR 222

Query: 316 LHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L  TP VL   RI L++   Q ++S  ++      +P+ + ++  T V + +  T+VL G
Sbjct: 223 LKVTPVVLPGNRILLQLNVNQDKMSSFLVN----GVPTIQTQQLTTKVMVNNQETVVLGG 278

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           + +   QQ + GIP L KIPILG LFR+ + + E  ++ I  TP ++ P           
Sbjct: 279 IYEQSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISP----------- 327

Query: 433 HYSVEDDAKAFFFNR 447
               E  +  + FNR
Sbjct: 328 ---YEKKSHQYLFNR 339


>gi|224372077|ref|YP_002606449.1| putative GspD [Nautilia profundicola AmH]
 gi|223589087|gb|ACM92823.1| putative GspD [Nautilia profundicola AmH]
          Length = 580

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 17/238 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPS-KSFAADFGG---KFVSEGGDFSVKG 249
           QV +K  I E+      QIG +  +  GS +G    + +A+ GG    F       S+  
Sbjct: 315 QVYVKARILEISNLKASQIGNKLGLYAGSGTGSGLYTLSANMGGPAIAFDVTSLGLSIPT 374

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
           +    +    +  LE   A + L+EP++  I+   ++   G     KT+S  TG T+ T+
Sbjct: 375 IRQGLALGATIDLLETFGAAKKLSEPSILCINNTPSTIYVG-----KTISVKTGQTTSTS 429

Query: 310 -------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
                   D G+ L   P + S  ++ L ++  V + + G     +P+   R   TT  +
Sbjct: 430 TSVSYSRQDIGLTLEIKPRIDSDNKVSLNVKAVVEDILPGSPDLTLPTTSKRDIKTTTIV 489

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +G +I++ GL++++     + +P    IPI+GALFR+   N ++T + I  TP++VK
Sbjct: 490 SNGQSIIIGGLVRNNKDITIKKVPFFGDIPIIGALFRHKEVNEDKTTLVIVLTPYIVK 547


>gi|90406756|ref|ZP_01214949.1| putative type II secretory pathway, component EpsD [Psychromonas
           sp. CNPT3]
 gi|90312209|gb|EAS40301.1| putative type II secretory pathway, component EpsD [Psychromonas
           sp. CNPT3]
          Length = 658

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 91/186 (48%), Gaps = 19/186 (10%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD--- 311
           ++  +L AL  +T    LA P++  +  Q ASF  G +     V   TG+TS   +D   
Sbjct: 420 NWGVMLQALSSSTGSNILATPSIMTLDNQEASFLVGDE-----VPVLTGSTSSDDNDNPF 474

Query: 312 -------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
                   GV L+ TP +     + L I+ EVS      N  D+  +  R   TTV + S
Sbjct: 475 QTIERKEIGVKLNVTPQINEGDSVQLVIEQEVSSIKDSTNTVDVV-FSTRSVKTTVLVKS 533

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE--IFIAATPFLVKPV 422
           G TIV+ GL+ + + +  + IPLL  IP LG LF+++R   E+    IF+ AT  +   V
Sbjct: 534 GQTIVIGGLIDEKVIESVDKIPLLGDIPWLGNLFKSTRNTTEKRNLMIFLRAT-IIRDDV 592

Query: 423 AMRDLS 428
            M +LS
Sbjct: 593 TMNELS 598


>gi|90581085|ref|ZP_01236885.1| putative type II secretory pathway, component EpsD [Vibrio angustum
           S14]
 gi|90437781|gb|EAS62972.1| putative type II secretory pathway, component EpsD [Vibrio angustum
           S14]
          Length = 674

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 28/220 (12%)

Query: 228 KSFAADFGGKF----VSEGGDFS--------VKGVLDRFS---FETVLHALERATAIRTL 272
           K +  D G +      +E GD +        VKG     +   +  ++ A++    +  L
Sbjct: 402 KRYDPDTGAELPPIVTTESGDLAPMAAFLGGVKGAAAAIALGDWTALVTAVQANRNVNVL 461

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPG 326
           + P +T +  Q A+  S GQ +  T  S TG+      T+V   D G+ L  TP +    
Sbjct: 462 STPNITVLDNQEANL-SVGQEVPVTTGSQTGSNNDNPFTTVERKDVGIQLKVTPQINEGD 520

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            + ++I+  VS+      A D+  +  R+  T+V +  G  I L GL+++   + ++ +P
Sbjct: 521 SVQMKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQKVP 579

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +L  IP+LGALFR++    E+T + +      ++P  +RD
Sbjct: 580 ILGDIPVLGALFRSTNNQTEKTNLMV-----FIRPTILRD 614


>gi|222056148|ref|YP_002538510.1| type IV pilus secretin PilQ [Geobacter sp. FRC-32]
 gi|221565437|gb|ACM21409.1| type IV pilus secretin PilQ [Geobacter sp. FRC-32]
          Length = 911

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 110/242 (45%), Gaps = 22/242 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQ---HSITGSSS--GPSKSFAADFGGKF-VSEGGDFS 246
           E QV ++  I E     ++ +G Q   H I GS+S  G S+     FGG+  ++     S
Sbjct: 676 EKQVMIEARIVEASTSFVRDLGVQWGIHYIDGSASVAGISR-LDTGFGGQVAIAPTSGTS 734

Query: 247 VKGVLDRFSF---------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             G     SF         +  L A   A  I+ ++ P +  ++ + A  + G    Y+T
Sbjct: 735 GPGAAVGMSFGKLASNIQLDMRLSAAVTADQIKIMSTPRVVTLNNKPAKISQGASIPYQT 794

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            S+    T     +  + L  TP + S G IG++I+   +        G  P    ++A 
Sbjct: 795 TSAEGTKTEFV--EAALTLEVTPHITSDGSIGMKIKASNN----SAGTGSPPPINKKEAT 848

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T + + +G T V+ G+  D   +  +G+P L  IP+LG LF+++  N+ + E+ I  TP 
Sbjct: 849 TELLIKNGETTVIGGIYVDSDTESDKGVPFLQDIPLLGWLFKSNTKNKSKNELLIFITPK 908

Query: 418 LV 419
           +V
Sbjct: 909 IV 910


>gi|77918000|ref|YP_355815.1| type II and III secretion system protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77544083|gb|ABA87645.1| type II and III secretion system protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 537

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 112/240 (46%), Gaps = 27/240 (11%)

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           V++A+ R DI    G    I GS      S  A   G F   GG FS    L+  +F+  
Sbjct: 270 VSMAQTRGDIFADNGL-ADIVGSDGAAVTSGLA--SGAF---GGVFS--AALNFKNFQAF 321

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----------SVTT 309
           +  LE    ++ L+ P +  ++ Q A    G    + T  SS   T          ++T 
Sbjct: 322 IELLETQGDVQVLSSPRIATVNNQKAVIKVGSDEFFVTDVSSDTVTGTTTTTSPDITLTP 381

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVN-AGDMPSY-----RVRKADTTV 360
              G+ L  TP +   G++ L I    +EVS+    +  AG+  +       VR++D+ V
Sbjct: 382 FFSGIALDVTPQIDPKGKVTLHIHPTVSEVSDQTKDITVAGETQTLPLAFSTVRESDSIV 441

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              SG  +V+ GL+KD +Q     +PLL ++P +GALFR+++    ++E+ I   P +V+
Sbjct: 442 AAESGQVVVIGGLMKDQLQNRDASVPLLGRLPGVGALFRHTQSVSRKSELVILLRPMVVE 501


>gi|88858853|ref|ZP_01133494.1| general (Type II) secretion pathway (GSP) D protein
           [Pseudoalteromonas tunicata D2]
 gi|88819079|gb|EAR28893.1| general (Type II) secretion pathway (GSP) D protein
           [Pseudoalteromonas tunicata D2]
          Length = 685

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 124/275 (45%), Gaps = 38/275 (13%)

Query: 195 QVTLKVTIAEVR-RDILKQ---IGFQHSITGSSSGPSKSFAAD-FGG-KFVSEGGDFSVK 248
           Q+ L+V IAEV   +  KQ     F++   G+S+   K+F  D FGG  ++ +G     +
Sbjct: 436 QIMLEVIIAEVSLTNEFKQGVEFAFKNGNYGTST--EKAFMGDGFGGLSYLLQG----TQ 489

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG------GQHLYKTVSSST 302
           G L       +++ L+  + +  L+ P+L    G +A+   G      G+     ++   
Sbjct: 490 GKL-------IVNLLQTNSLVNILSRPSLVVRDGVNATINVGTDIPIVGETASDPINGDR 542

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVE 361
             T +     GV L  TPTV + G + + I+ ++S  V  G      PS   R  +T V 
Sbjct: 543 QTTKIEYRKTGVELAVTPTVNAQGIVLMEIKQKISNQVESGSTVSGNPSVFERTINTEVV 602

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             SG TI+L GL+ ++       +P  S IPILG LFR    + ++TE+ I  TP ++  
Sbjct: 603 AESGQTIILGGLISENKSTKASRVPFFSGIPILGNLFRADTESGDKTELVILVTPRVI-- 660

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
                     +  S  DD K  F N    +  P++
Sbjct: 661 ----------ESSSEWDDVKKLFDNAFENLKLPQK 685


>gi|319428303|gb|ADV56377.1| type IV pilus secretin PilQ [Shewanella putrefaciens 200]
          Length = 683

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 24/248 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSF--AADFGGKFVSEGGD------ 244
           QV ++  +  V+ ++ + +G +  IT    + G S S   A D     V   GD      
Sbjct: 433 QVLIESRMVTVKDNVSEDLGIRWGITDQQGNKGSSGSLEGAQDIANGIVPSIGDRLNVNL 492

Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                      F V  + D    +  L ALE+      +A P +T  S Q A++   G  
Sbjct: 493 PAQVDSAASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGIE 551

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ-TEVSE-PVIGVNAGDMPSY 351
           +    S+S+GATSVT     + L  TP +    R+ L ++ T+ SE   +  + G   + 
Sbjct: 552 IPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSEGKTVPTSTGPAVAI 611

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ 
Sbjct: 612 DTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTTDKNERQELL 671

Query: 412 IAATPFLV 419
           I  TP +V
Sbjct: 672 IFVTPKIV 679


>gi|307545809|ref|YP_003898288.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
 gi|307217833|emb|CBV43103.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
          Length = 700

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 9/174 (5%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G  S  GV    SF  +L+AL   T    L+ P+LT +    AS   G +  + T S++ 
Sbjct: 448 GRLSSGGV----SFAMLLNALRSDTQTNLLSTPSLTTLDNAEASILVGQEVPFVTGSTTV 503

Query: 303 GAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
             T    ++   D GV L+  PT+ +   I L I  EVS    GV A D+ + + R+ +T
Sbjct: 504 DNTNPFQTIQREDVGVKLNIRPTIGADNSIRLEIVQEVSSIDEGVKASDVVTNK-REIET 562

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           TV    GG IVL GL+ D+    ++ +PLL  IP +G LFR  R  +++  + +
Sbjct: 563 TVLTQDGGIIVLGGLISDENANAEQKVPLLGDIPGVGRLFRYDRDTQDKRNLMV 616


>gi|253690245|ref|YP_003019435.1| type IV pilus secretin PilQ [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756823|gb|ACT14899.1| type IV pilus secretin PilQ [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 424

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +  + +  T
Sbjct: 258 LMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 317

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +L  GRI L ++   + P   +  GD     +   ++  T V +  G TIVL G+ + 
Sbjct: 318 PDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQ 377

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +     +P+L ++P+ G LFRN        E+ I  TP L+
Sbjct: 378 QKKSSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420


>gi|325924171|ref|ZP_08185732.1| General secretion pathway protein D [Xanthomonas gardneri ATCC
           19865]
 gi|325545346|gb|EGD16639.1| General secretion pathway protein D [Xanthomonas gardneri ATCC
           19865]
          Length = 758

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 30/199 (15%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDY 312
           ++ AL+R T +R L  P++   +   A+   G +    + S +TG       +SV   D 
Sbjct: 554 IISALDRVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDT 613

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP----------------VIGVNAGDMPSYRVRKA 356
           GV+L   P V   G + L I  EVS P                    N  D+ + RV+  
Sbjct: 614 GVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTTVNSAACNV-DINTRRVK-- 670

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T   + +G TI+LAGL+ D      +G+P LSK+P++G+LF     NR   E+ +  TP
Sbjct: 671 -TEAAVQNGDTIMLAGLIDDTTSDGSDGLPFLSKLPVVGSLFGRKTQNRNRREVIVLITP 729

Query: 417 FLVK-PVAMRDLSRPDDHY 434
            +V+ P   RDL+   D Y
Sbjct: 730 SIVRNPQDARDLT---DEY 745


>gi|328952531|ref|YP_004369865.1| general secretion pathway protein D [Desulfobacca acetoxidans DSM
           11109]
 gi|328452855|gb|AEB08684.1| general secretion pathway protein D [Desulfobacca acetoxidans DSM
           11109]
          Length = 794

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 22/204 (10%)

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           S  FAA  G  FV+      +KG+++  S E           +  LA P + A + Q A 
Sbjct: 559 SAQFAAASGLTFVALDTANKLKGLINLLSSEG---------KVNILASPHIMAANNQEAR 609

Query: 287 FTSGGQ------HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
              G +           VS +T     +V   + G++L   P + + G + L I  EVS 
Sbjct: 610 IMIGEEVPILSSQSIPLVSQTTSFQTNTVQYRNTGIILTVKPQINAKGLVTLEIAQEVSN 669

Query: 339 PV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                 GV +   P++ VR A T +      T+VL GL+++D+ + + GIP L +IP+LG
Sbjct: 670 ATATTTGVTSS--PTFTVRHAKTQLITGDNQTVVLGGLIREDLTETQAGIPGLRRIPLLG 727

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LF ++  +R++TE+ +  TP +V
Sbjct: 728 PLFGSTGVSRQKTELVVLITPHIV 751


>gi|120600633|ref|YP_965207.1| type IV pilus secretin PilQ [Shewanella sp. W3-18-1]
 gi|146294790|ref|YP_001185214.1| type IV pilus secretin PilQ [Shewanella putrefaciens CN-32]
 gi|120560726|gb|ABM26653.1| type IV pilus secretin PilQ [Shewanella sp. W3-18-1]
 gi|145566480|gb|ABP77415.1| type IV pilus secretin PilQ [Shewanella putrefaciens CN-32]
          Length = 683

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 24/248 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSF--AADFGGKFVSEGGD------ 244
           QV ++  +  V+ ++ + +G +  IT    + G S S   A D     V   GD      
Sbjct: 433 QVLIESRMVTVKDNVSEDLGIRWGITDQQGNKGSSGSLEGAQDIANGIVPSIGDRLNVNL 492

Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                      F V  + D    +  L ALE+      +A P +T  S Q A++   G  
Sbjct: 493 PAQVDSAASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGIE 551

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ-TEVSE-PVIGVNAGDMPSY 351
           +    S+S+GATSVT     + L  TP +    R+ L ++ T+ SE   +  + G   + 
Sbjct: 552 IPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSEGKTVPTSTGPAVAI 611

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ 
Sbjct: 612 DTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTTDKNERQELL 671

Query: 412 IAATPFLV 419
           I  TP +V
Sbjct: 672 IFVTPKIV 679


>gi|218961675|ref|YP_001741450.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730332|emb|CAO81244.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
          Length = 472

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 32/257 (12%)

Query: 193 EDQVTLKVTIAEVRRDILKQIG-----FQHSITGSSSGPSKSFAADFGGKFVSEGG---- 243
           + Q+ ++V + EV  +  KQIG       H  T  +  P   +       +    G    
Sbjct: 190 QQQIEIRVRLIEVHLNEAKQIGVDWSKLNHLTTILAEDPVNQYGTGLPYNYSDATGYLPH 249

Query: 244 ----DFSV----------KGVLD--RFS-----FETVLHALERATAIRTLAEPTLTAISG 282
               DF V           G  D   FS     F+  +  L    A + L +  +TA++G
Sbjct: 250 GDPTDFGVIPDEQYFQRINGFHDIGHFSRQLTAFDVTIDWLLENNAAQLLTDTRVTALNG 309

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           + A+    G+ +   V+       V   + G++L+ TP V   G I + I  EVS  V  
Sbjct: 310 ELATM-HIGEVVPFVVTDKENQLQVERSETGIILNVTPKVNKDGNITMNINPEVSS-VTE 367

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +  G +P  +VR+  + V +P+   I++ GLL  +I Q    IPLL  +P++G +F++  
Sbjct: 368 LVGGYIPRTKVRRVSSAVTVPNEHKIIVGGLLNSNITQKINKIPLLGDLPLIGKIFQHRY 427

Query: 403 FNREETEIFIAATPFLV 419
              E T++ I  TP LV
Sbjct: 428 ELVENTDLIIEITPRLV 444


>gi|161830646|ref|YP_001597710.1| type II and III secretion system family protein [Coxiella burnetii
           RSA 331]
 gi|161762513|gb|ABX78155.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii RSA 331]
          Length = 349

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 2/170 (1%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            +  L ALE+    + L+ P L   + Q+A   SG    Y+   +  G TSVT     + 
Sbjct: 164 LDLTLSALEQEGRAQVLSCPELMTNNRQTAIIESGEAIPYQE-KTGQGNTSVTFKKATLR 222

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP VL   RI L++     + +       +P+ + ++  T V + +  T+VL G+ +
Sbjct: 223 LKVTPVVLPGNRILLQLNVN-QDKMSSFLVNGVPTIQTQQLTTKVMVNNQETVVLGGIYE 281

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
              QQ + GIP L KIPILG LFR+ + + E  ++ I  TP ++ P   R
Sbjct: 282 QSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISPYEKR 331


>gi|326796946|ref|YP_004314766.1| type II and III secretion system protein [Marinomonas mediterranea
           MMB-1]
 gi|326547710|gb|ADZ92930.1| type II and III secretion system protein [Marinomonas mediterranea
           MMB-1]
          Length = 398

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 5/226 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ ++  IA+V R   K +G     T    G  ++         +      +V+      
Sbjct: 174 QIEIQAHIAQVHRSAQKTLGVNWQ-TVIEDGTRQALTGMVNLNAIGATSSLAVETTRGSS 232

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
               +L ALE       +++P +    GQSA   SG +  Y+        T+V     G+
Sbjct: 233 RLSLLLDALETDGFANVISKPKIVTAEGQSARIESGTEIPYQV--QHDDVTTVEFRQAGL 290

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           +L  TP V   G   LR+   + +  +G     +PS    + +T VE+  G T+VL G+ 
Sbjct: 291 MLEVTPIVKEQGV--LRLDLNIHQDSVGEMVNGVPSLETNRLNTQVEVKDGETLVLGGIF 348

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +  +    +P+   +P+LGALFR+     E+ E+ +  TP L++
Sbjct: 349 RQEKFENISKVPVFGDLPVLGALFRHRSDKTEKVELLVFITPKLLQ 394


>gi|258592161|emb|CBE68468.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 764

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 4/179 (2%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            ++  + +RF     L   E    IRTL+ P +     + A    G Q  Y T+ +S G 
Sbjct: 583 MTIGSLANRFLVGAQLSVAENQGKIRTLSSPRVATQDNEEAEIKQGTQVPYTTIDAS-GR 641

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVEL 362
           T V   D  + L   P +   GR+ ++++ E S P   VN   G +     RKA T + +
Sbjct: 642 TVVQFQDAFIKLKVKPHITPDGRVAMKVEAERSFPGQQVNFSGGFVFPINTRKATTNIMV 701

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE-TEIFIAATPFLVK 420
            +G T+V+ GLL+     + + +P+L  IPILG LF+      +E  E+ I  TP +++
Sbjct: 702 QNGSTVVIGGLLQSSETIISDQVPVLGDIPILGWLFKRRAIGPDERVELLIFLTPSVLQ 760


>gi|227112152|ref|ZP_03825808.1| putative outer membrane porin HofQ [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 420

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +  + +  T
Sbjct: 254 LMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 313

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +L  GRI L ++   + P   +  GD     +   ++  T V +  G TIVL G+ + 
Sbjct: 314 PDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQ 373

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +     +P+L ++P+ G LFRN        E+ I  TP L+
Sbjct: 374 QKKNSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 416


>gi|157363362|ref|YP_001470129.1| type II and III secretion system protein [Thermotoga lettingae TMO]
 gi|157313966|gb|ABV33065.1| type II and III secretion system protein [Thermotoga lettingae TMO]
          Length = 1179

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 4/144 (2%)

Query: 273  AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            A P +   SG+ A    G +  Y+T+ +  G   V   D G+ L  TP V + G I L I
Sbjct: 1033 ASPRIVTSSGKEARILIGDRVPYQTIDAD-GNVIVNFLDTGIELRITPYVRTDGTIELNI 1091

Query: 333  QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             T+VS+P    N  D+P    R+ +T V L +G T+V+ GL+++  ++    +P L  +P
Sbjct: 1092 FTKVSKPTYYPNI-DIPGESTRETETDVILKNGDTLVIGGLMRETKEETSAKMPFLGDLP 1150

Query: 393  ILGALFRN--SRFNREETEIFIAA 414
             +G LFR+   + ++ E  IFI A
Sbjct: 1151 FIGQLFRSKTEKADKRELLIFITA 1174


>gi|148263871|ref|YP_001230577.1| type IV pilus secretin PilQ [Geobacter uraniireducens Rf4]
 gi|146397371|gb|ABQ26004.1| type IV pilus secretin PilQ [Geobacter uraniireducens Rf4]
          Length = 944

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 106/242 (43%), Gaps = 22/242 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQ---HSITGSSS--GPSKSFAADFGGKFV-------- 239
           E QV ++  I E +   ++ +G Q   H + GS+S  G S+ F   FGG           
Sbjct: 709 EKQVMIEARIVEAQTSFVRDLGVQWGLHYVDGSASVAGISR-FDTGFGGVVTPPPTSGTS 767

Query: 240 --SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                   S   +      +  L A   A  I+ ++ P +  ++ + A  + G    Y+T
Sbjct: 768 GPGAAAGMSFGKLASNIQIDMRLSAAVTAEQIKIISSPRVVTLNNKPAKISQGASIPYQT 827

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            S+    T     +  + L  TP + S G IG++I+   +        G  P    ++A 
Sbjct: 828 TSAEGTKTEFV--EAALTLEVTPHITSDGSIGMKIKASNN----SAGTGSPPPINKKEAT 881

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T + + +G T V+ G+  D      +G+P L  IP+LG LF+++  N+ + E+ I  TP 
Sbjct: 882 TELLVKNGETTVIGGIYVDSETDNDKGVPFLQDIPLLGWLFKSNTKNKSKNELLIFITPK 941

Query: 418 LV 419
           ++
Sbjct: 942 II 943


>gi|269959332|ref|ZP_06173715.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835769|gb|EEZ89845.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 715

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 111/245 (45%), Gaps = 28/245 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSK-SFAAD-FGGKFVS--EGGDFSVKG 249
           QV L++TIAEV      + G + + + G+ S  +K +F  D  GG F+    G DF    
Sbjct: 471 QVILEMTIAEVTMTDEFKFGVEWAFSNGNFSASTKDAFGLDKVGGGFIKWMSGDDF---- 526

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG------GQHLYKTVSSSTG 303
                     L A E    +  +++P+L    G  A+   G      GQ    T  S+ G
Sbjct: 527 --------INLQAFESNNNVNIMSKPSLLVRDGVEANINVGTDIPVVGQ---TTTDSNNG 575

Query: 304 AT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVE 361
            T SV     GV +  TPT+ + G + + I  E S  V G  +    PS   R   T V 
Sbjct: 576 VTRSVEYRKTGVKVAVTPTINAQGIVSMVISQENSNQVDGGTSVEGNPSIFDRSITTEVV 635

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             SG T++L GL+ +++      +P L  +P++G LF     N+ +TE+ I  TP +V+ 
Sbjct: 636 AESGQTVILGGLISENVTNNGSAVPFLGSLPVVGGLFGTKTDNKTKTELVIMVTPRIVES 695

Query: 422 VAMRD 426
            +  D
Sbjct: 696 SSQWD 700


>gi|317051459|ref|YP_004112575.1| general secretion pathway protein D [Desulfurispirillum indicum S5]
 gi|316946543|gb|ADU66019.1| general secretion pathway protein D [Desulfurispirillum indicum S5]
          Length = 638

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 108/251 (43%), Gaps = 28/251 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGP--SKSFA-------------ADFGGK 237
           QV ++  I EV  D L Q+G Q +    G + GP    SF+             A     
Sbjct: 347 QVLIEAVIVEVVGDSLNQLGVQLAARSAGDTLGPIGGTSFSNAGTSLSNILTSIATQTPP 406

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--- 294
            +S+G    V           +L AL   T    L+ P++  +  Q AS   G Q++   
Sbjct: 407 TISDGMSLGVATTSGSVEMGALLTALASVTNANLLSTPSILTLDNQEASILVG-QNIPVR 465

Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
              Y   S +   T++   D G+VL  TP++     +  R+Q E+    +     D    
Sbjct: 466 TGTYSHDSGTNPFTTIQRQDVGIVLKTTPSIYEGNSV--RMQVELEASSVLTEGTDGIIT 523

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETE 409
             R+  TT+   +  TIVL GL+KDD+Q++   +PLL  IP+LG LF  R  R  +    
Sbjct: 524 NKREIITTILADNNETIVLGGLIKDDVQEVVSKVPLLGDIPLLGRLFQARRQRVEKRNLL 583

Query: 410 IFIAATPFLVK 420
           +F+  T  L +
Sbjct: 584 VFLRPTILLTQ 594


>gi|126665040|ref|ZP_01736023.1| Type II secretory pathway, component PulD [Marinobacter sp. ELB17]
 gi|126630410|gb|EBA01025.1| Type II secretory pathway, component PulD [Marinobacter sp. ELB17]
          Length = 640

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 38/258 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----------------SKSFAADFG--- 235
           QV ++  I E+  ++ +Q+G Q +    SSG                 ++  +A  G   
Sbjct: 342 QVMIEAAIVEISENMGEQLGVQLAAGDESSGGFPVLGTNLASGGMLGLNQVISAVLGDGT 401

Query: 236 -----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                G   +  GD +  GV    ++  ++ AL  ++A   L+ P++  +  Q +    G
Sbjct: 402 VPALAGGLTAGAGDRNRNGV----TWGLLIQALSTSSAANLLSTPSIITLDNQESEIIVG 457

Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVI 341
               ++T  ++          T++   D G+ L  TPT+ + G + L ++  TE   P  
Sbjct: 458 QNVPFRTGQAAVSGEGLTNPFTTIERRDVGLTLKVTPTISADGLVRLVVEQTTENVVPTT 517

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
              A D+ + + R+  TTV    G TIVL GL+KDD +  K  +PLL  IP LG LF + 
Sbjct: 518 VAGASDLITNK-REIKTTVLADDGETIVLGGLMKDDYEVQKSKVPLLGDIPYLGRLFSSE 576

Query: 402 RFNREETEIFIAATPFLV 419
             +R +  + +   P ++
Sbjct: 577 SESRVKRNLLVFLRPTIM 594


>gi|170721354|ref|YP_001749042.1| general secretion pathway protein D [Pseudomonas putida W619]
 gi|169759357|gb|ACA72673.1| general secretion pathway protein D [Pseudomonas putida W619]
          Length = 745

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 17/241 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           QV ++  I EV+      +G Q     + G+SS  S + A + G +     G  ++    
Sbjct: 480 QVQIETRILEVKLTGDLDLGVQWYLGRLAGNSS--STTVANESGSQGALGAGGVALGSAS 537

Query: 252 DRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSS 301
             +SF     +  L ALE     + L+ P+L  ++ Q A    G      Q    T  S 
Sbjct: 538 MFYSFVSSNLQVALRALETRGLTQVLSAPSLVVLNNQQAQIQVGDNIPISQTTVNTSDSD 597

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTT 359
           T  +SV     GV+L   P +   G + + IQ +VS+          P+ R+  R   T 
Sbjct: 598 TTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADDSAVTTTQPNPRISSRAVSTQ 657

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V + SG T++L GL+K D  Q    +P LS IP LG LF ++  +R+ TE+ +  TP +V
Sbjct: 658 VAVQSGQTVLLGGLIKQDNGQSDTRVPGLSSIPGLGWLFGSTSKSRDRTELIVLITPRVV 717

Query: 420 K 420
            
Sbjct: 718 N 718


>gi|291279696|ref|YP_003496531.1| general secretion pathway protein D [Deferribacter desulfuricans
           SSM1]
 gi|290754398|dbj|BAI80775.1| general secretion pathway protein D [Deferribacter desulfuricans
           SSM1]
          Length = 621

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 17/202 (8%)

Query: 225 GPSKSFAADFGGKFVSE--GGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAIS 281
           G S +FAA  GG F +   G   + +GV  +F +   +++ ++  +AI  ++ P +  + 
Sbjct: 385 GNSPNFAALPGG-FTAAILGNVITYEGV--KFPTLSALVNFVKTDSAINIISNPQILTLD 441

Query: 282 GQSASFTSGGQHLYKTVSS-STGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVS 337
            + A    G    + T +        V ++DY   G+ L  TP +     + L+I+ EV 
Sbjct: 442 NEEAEVFVGENRPFLTSTKFDANNNPVQSYDYRDVGIRLKITPHISDNKTLTLKIEQEVK 501

Query: 338 EPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           + +   NAG+    P    RK  T VEL  G T+V++GL+ DD       +P LSKIPIL
Sbjct: 502 KVI--ANAGNDLTAPITLTRKTKTMVELIDGYTMVISGLIGDDTSVSNSEVPFLSKIPIL 559

Query: 395 GALFRNSRFNREETE--IFIAA 414
           G LF++   +R +T   +FI A
Sbjct: 560 GWLFKSRNRSRSKTNMMVFITA 581


>gi|223935099|ref|ZP_03627017.1| type II and III secretion system protein [bacterium Ellin514]
 gi|223895983|gb|EEF62426.1| type II and III secretion system protein [bacterium Ellin514]
          Length = 612

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 16/175 (9%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSS---STGATSVTTHDYGV 314
           VL  L      + L+ P    +  ++A+ + +  Q ++KT +    S G + VT  + G 
Sbjct: 387 VLSFLNTDNDAQVLSTPRAVTLDNETATLSVTRAQPIFKTTAGTQGSPGGSEVTYTNVGT 446

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSG 365
           +L  TP + +   I LR+  EVS  V G         +N  D+  + VR  DT V +PSG
Sbjct: 447 ILKVTPRISANKMISLRVIPEVSS-VAGTDRKIVSGQINEADI--FDVRHIDTQVLIPSG 503

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+V+ GL+ DD  +    +PLL  IP LGA FR+    + +  + I  TP +V+
Sbjct: 504 NTLVMGGLVSDDRTKSYIKVPLLGDIPYLGAAFRHESKTQNKKNLIIFVTPTIVE 558


>gi|229589906|ref|YP_002872025.1| putative type II secretion pathway protein D [Pseudomonas
           fluorescens SBW25]
 gi|229361772|emb|CAY48654.1| putative type II secretion pathway protein D precursor [Pseudomonas
           fluorescens SBW25]
          Length = 770

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 111/255 (43%), Gaps = 31/255 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI----------------TGSSSGPSKSFAADFGGKF 238
           QV ++  I EV  D   + G Q                   +G +S P+   + D   K 
Sbjct: 452 QVVIESLIVEVGEDDATEFGVQWQAGNLAGKGGFGGVNLGGSGVNSTPTSKTSIDVLPKG 511

Query: 239 VSEG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           ++ G   G   + G+      + +  AL+       L+ P L  +  ++AS   G    +
Sbjct: 512 LNVGLVNGTVDIPGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPF 571

Query: 296 KTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNA 345
            T S  TG          +V   + G+ L+  P +   G + L I  EVS  +    V+A
Sbjct: 572 VTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSTVDTRASVDA 631

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           G + + R    DT++ L  G  +VL GLL+D   Q  + +P LS IP LGALFRN + + 
Sbjct: 632 GTVTNKRA--IDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSDIPGLGALFRNEKRSV 689

Query: 406 EETEIFIAATPFLVK 420
            +T + +   P++++
Sbjct: 690 NKTNLMVFLRPYIIR 704


>gi|186477814|ref|YP_001859284.1| general secretion pathway protein D [Burkholderia phymatum STM815]
 gi|184194273|gb|ACC72238.1| general secretion pathway protein D [Burkholderia phymatum STM815]
          Length = 787

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 91/209 (43%), Gaps = 31/209 (14%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSSTGATSVTTHD-- 311
           +L AL +      L+ P L  +  Q A    G         Y  ++SST  T+  T D  
Sbjct: 501 LLQALSQTADANVLSTPNLITLDNQEAKIVVGTNVPIQTGSYSNLTSSTATTAFNTFDRI 560

Query: 312 -YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------AGDMPSYRVRKADTTVELPS 364
             G+ LH  P +   G + L++ TE S  V G        AG  P +  R   +TV   +
Sbjct: 561 DVGLTLHIKPQITDGGILKLQLYTEDSAIVAGTTNVTTNPAG--PEFTKRSIQSTVLADN 618

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  IVL GL++D+ Q     +PLL  IP +G LFR+    R +T + +      ++PV +
Sbjct: 619 GEIIVLGGLMQDNYQVTNSKVPLLGDIPWIGQLFRSENKTRAKTNLLV-----FLRPVII 673

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
            D +           A+A   NR + I G
Sbjct: 674 ADRAT----------AQAVTANRYDYIQG 692


>gi|56461126|ref|YP_156407.1| Type II secretory pathway, component PulD [Idiomarina loihiensis
           L2TR]
 gi|56180136|gb|AAV82858.1| Type II secretory pathway, component PulD [Idiomarina loihiensis
           L2TR]
          Length = 708

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 10/186 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  V+ A+ + T    LA P++  +  + ASF  G Q +     S+TG        +V  
Sbjct: 455 WAAVVQAVTQDTRSNILATPSIVTVDNEEASFLVG-QEVPTISGSTTGDNNDNPFQTVDR 513

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            + G+ L  TP +     + + I+ EVS  + G  A D+   + R+  TTV    G TIV
Sbjct: 514 TEIGIKLKVTPQINEGDAVQMTIEQEVSS-LSGATAVDVIINK-RELKTTVMADDGETIV 571

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLS 428
           L GL+ +D+Q+    +PLL  IPILG LF ++  ++++  + +   P +V+    MR+LS
Sbjct: 572 LGGLIDEDVQESVSKVPLLGDIPILGKLFSSTSTSKQKRNLMVFIRPTIVRDGNRMRELS 631

Query: 429 RPDDHY 434
               +Y
Sbjct: 632 SAKYNY 637


>gi|118475530|ref|YP_892173.1| type II and III secretion system protein [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414756|gb|ABK83176.1| type II and III secretion system protein [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 512

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 29/227 (12%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           TGS+  P++S     GG FV  GG           S + VL+ LE     + ++ P +  
Sbjct: 283 TGSAGNPAQSLRNITGG-FVLGGGI--------NLSMDGVLNFLETKGRTKVVSSPKIMT 333

Query: 280 ISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDY-------GVVLHFTPTVLSPGRIG 329
           ++ Q A  T G    Y+    +T     T+VT   Y       G++L+  P V   GRI 
Sbjct: 334 MNNQQALITVGDNINYRVQEDTTNNNTQTAVTNTTYTQYSIFIGILLNLLPEVSDDGRIM 393

Query: 330 LRIQTEVSEPVIG------VNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           LRI   +S    G       N  ++ P    +K  T V++ SG TI+L GL+ +   +  
Sbjct: 394 LRINPSLSSFKYGDDNRRQANIREIAPDTLQKKLSTVVQVNSGDTIILGGLIGETKGKDN 453

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK---PVAMRD 426
             +P+L  IP+ G LF++++ +   TE+    TP ++    P  +R+
Sbjct: 454 TSVPVLGDIPLFGNLFKSTKDSVSTTELIFIITPKVINNETPKQIRN 500


>gi|215919282|ref|NP_820868.2| type II and III secretion system family protein [Coxiella burnetii
           RSA 493]
 gi|206584166|gb|AAO91382.2| type 4 pili secretin (outer membrane porin) [Coxiella burnetii RSA
           493]
          Length = 353

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 16/192 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            +  L ALE+    + L+ P L   + Q+A   SG    Y+   +  G TSVT     + 
Sbjct: 168 LDLTLSALEQEGRAQVLSCPELMTNNRQTAIIESGEAIPYQE-KTGQGNTSVTFKKATLR 226

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP VL   RI L++     + +       +P+ + ++  T V + +  T+VL G+ +
Sbjct: 227 LKVTPVVLPGKRILLQLNVN-QDKMSSFLVNGVPTIQTQQLTTKVMVNNQETVVLGGIYE 285

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
              QQ + GIP L KIPILG LFR+ + + E  ++ I  TP ++ P              
Sbjct: 286 QSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISP-------------- 331

Query: 436 VEDDAKAFFFNR 447
            E  +  + FNR
Sbjct: 332 YEKKSHQYLFNR 343


>gi|315636411|ref|ZP_07891655.1| general secretion pathway protein D [Arcobacter butzleri JV22]
 gi|315479277|gb|EFU69966.1| general secretion pathway protein D [Arcobacter butzleri JV22]
          Length = 478

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 117/243 (48%), Gaps = 22/243 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGG--KFVSEG-------- 242
           QV ++  I EV  +++ +IG  + I  SS  S    + +++  G    + E         
Sbjct: 175 QVYVQAKIIEVNNELVNKIGISYGIINSSARSDGINAISSNLNGGSNAIKEAVDTLGIRM 234

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D ++K  L   +    L+ L++  A+  ++EP++ AI  + +S   G +   +  S+ T
Sbjct: 235 NDLNIKSGL---ALGASLNLLQQNGALDIVSEPSILAIDNKESSIYVGEKISVEISSTLT 291

Query: 303 GA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
                 T+    D G+ L   P + S  ++ L I T + E +    V+AG  P    ++ 
Sbjct: 292 DGGLQRTNYEREDIGLTLKVKPRISSDTKLTLEINT-LLEGIKSTSVSAGQNPDTLKKEI 350

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T   L +G ++++ GL+++  + +++ +P+L  IP+ G LF+N     ++  + I  TP
Sbjct: 351 KTAAILNNGESVIIGGLIENKNETIEQKVPVLGDIPLFGELFKNDSKMNKKNNLVIIVTP 410

Query: 417 FLV 419
           +++
Sbjct: 411 YMI 413


>gi|170694279|ref|ZP_02885433.1| general secretion pathway protein D [Burkholderia graminis C4D1M]
 gi|170140702|gb|EDT08876.1| general secretion pathway protein D [Burkholderia graminis C4D1M]
          Length = 781

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 33/221 (14%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVS 299
           F V+G         +L AL +      L+ P L  +  + A    G         Y  ++
Sbjct: 493 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNIPIQTGSYSNLT 546

Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYR 352
           S   +++  T+D    G+ LH  P +   G + L++ TE S  V G          P + 
Sbjct: 547 SGNASSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVNGTTNATTNPAGPQFT 606

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +TV   +G  IVL GL++D+ Q     +PLL  IP +G LFR+ + NR +T + +
Sbjct: 607 KRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKNRNKTNLMV 666

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
               FL +PV + D           D A+A   NR + I G
Sbjct: 667 ----FL-RPVIIGD----------RDTAQAVTSNRYDYIQG 692


>gi|254283571|ref|ZP_04958539.1| general secretion pathway protein D [gamma proteobacterium NOR51-B]
 gi|219679774|gb|EED36123.1| general secretion pathway protein D [gamma proteobacterium NOR51-B]
          Length = 682

 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 9/188 (4%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-S 300
           G       V D  +   +L+ALE       L+ P+L  +  + A  T G Q  + T S +
Sbjct: 434 GATLGWGAVDDDLTMTVILNALETQGNANILSTPSLLTLDNEEAYITVGQQVPFVTGSFT 493

Query: 301 STGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
           +TG+         ++   + G+ L  TP V     + L I  EVS     +         
Sbjct: 494 NTGSGDSARNPFQTIERQNVGITLKVTPQVNEGDSVVLDIVQEVSSISQQLLVASDVITN 553

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            RK +T V    G  +VL GL+KD++Q  ++G+P+LS IP+LG LFRN      ++ + +
Sbjct: 554 ERKIETKVLASDGDIVVLGGLVKDEVQDSQQGVPILSSIPLLGRLFRNDVVEVSKSNLLV 613

Query: 413 AATPFLVK 420
              P +V+
Sbjct: 614 FIRPTIVR 621


>gi|307719942|ref|YP_003891082.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978035|gb|ADN08070.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 502

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 28/240 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           QV ++  I EV  +   Q+G    + G S   P  +          S G   +V G ++ 
Sbjct: 261 QVLIEAKILEVTLNKSHQLGINWDVVGKSVFSPGDTLNIQ-----QSLGLTGAVAGTVNY 315

Query: 254 FS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG--QHLYKTVSSSTGATS--- 306
            +  F  +++A+++   I T++ P +  ++GQSA  +SG    +  K V +S G ++   
Sbjct: 316 SANNFNALINAIDQNGNIDTISNPRIKVLNGQSAIISSGKLVPYWEKQVDTSQGTSTNNI 375

Query: 307 VTTHDY-----GVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMPSYR 352
           + T++      GV +  TPTV+  GRI L + T +S  +          GV+    P   
Sbjct: 376 LVTYNRRDVLDGVTMGVTPTVMENGRIMLNV-TPISSSIESEKVYHDDQGVSVATAPIIN 434

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           +++A T +   +   +++ GL+   I++ K+ +P LS +P++G+LF      +E+ E+ I
Sbjct: 435 IKEAGTIIYAKNNDLVLIGGLMSTSIKKNKQEVPFLSNLPLVGSLFTQVNNTKEKKELVI 494


>gi|332295419|ref|YP_004437342.1| type II and III secretion system protein [Thermodesulfobium
           narugense DSM 14796]
 gi|332178522|gb|AEE14211.1| type II and III secretion system protein [Thermodesulfobium
           narugense DSM 14796]
          Length = 630

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 42/247 (17%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH--------SITGSSS-GPSKSFAADFGGKFVSEGGDF 245
           Q+ ++V + E+    +KQ+G Q         + TG+ + G SKS ++ + G   +     
Sbjct: 403 QIEVQVMVIELDNQGIKQLGIQWPNNIQFSGNATGTRTYGTSKSKSSVYTGTISN----- 457

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-KTVSSSTGA 304
                         L+A       + L++P + A+ GQ  S+   G  LY   VSS+TG 
Sbjct: 458 ----------ITASLYAQLNNNNAKILSDPRILALDGQD-SYVFAGDKLYIPQVSSATGG 506

Query: 305 T-SVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-------- 353
             + TT++Y  GV+L  TP +   G I + +      P +    GD+   ++        
Sbjct: 507 NVTYTTNEYDVGVLLKITPFIGENGEITIHV-----TPSVSAFNGDVTQLQINQPFTTTI 561

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+AD T  +  G T  + GL+ D+ ++    +P L  +P+LG +FR     +  TE+   
Sbjct: 562 READVTARVKDGQTFYIGGLISDEQRKQTISVPGLGNMPLLGPMFRYDYNMKSRTEVIFL 621

Query: 414 ATPFLVK 420
            TP +VK
Sbjct: 622 LTPHIVK 628


>gi|77459397|ref|YP_348904.1| type II and III secretion system protein [Pseudomonas fluorescens
           Pf0-1]
 gi|77383400|gb|ABA74913.1| general secretion pathway protein D [Pseudomonas fluorescens Pf0-1]
          Length = 783

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 33/269 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++V++LL+     QV ++  I EV  D   + G Q   TG+  G      A+ GG  ++ 
Sbjct: 455 REVIDLLD-QRRAQVVIESLIVEVGEDDASEFGVQWQ-TGNLGGKGVIGGANLGGSGINV 512

Query: 242 GGDFS------------VKGVLDR------FSFETVLHALERATAIRTLAEPTLTAISGQ 283
            G  S            V G +D          + +  AL+       L+ P L  +  +
Sbjct: 513 NGKTSLDVLPQGLNLGYVNGTVDIPGIGKILDLKVLARALKSKGGTNVLSTPNLLTLDNE 572

Query: 284 SAS--------FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +AS        F SG        +S+    +VT  + G+ L+  P +   G + L I  E
Sbjct: 573 AASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQE 632

Query: 336 VS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           VS          N+  + + + R  DT++ L  G  +VL GLL+D   Q  + +P LS I
Sbjct: 633 VSSIDERASAAANSAGIVTSK-RALDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNI 691

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P +GALFRN R +  +T + +   P++++
Sbjct: 692 PGIGALFRNERRSITKTNLMVFLRPYIIR 720


>gi|15805800|ref|NP_294498.1| general secretion pathway protein D [Deinococcus radiodurans R1]
 gi|6458483|gb|AAF10350.1|AE001932_2 general secretion pathway protein D, putative [Deinococcus
           radiodurans R1]
          Length = 740

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 47/255 (18%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR- 253
           Q+ ++V I EV    L+ +G              ++ A FGG  V+  G   +    +  
Sbjct: 504 QINVQVRIQEVNERALQSLGL-------------NWRATFGGFNVAVSGGTGLAATFNPT 550

Query: 254 -----FSFETVLHALERATAIRTLAEPTLTAISGQ-SASFTSGGQHLYKTVSSSTGATSV 307
                F+    L ALE     R + +  +T  SGQ S S T G Q+     +SS  A SV
Sbjct: 551 QSFLGFNIFPTLTALETQGLTRRVYDGNVTMQSGQRSLSATGGAQN-----ASSGAAASV 605

Query: 308 TTH------------------DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
            +                   DYG+ L F +P V   G I LRI+ +V++P   + A  +
Sbjct: 606 KSGGRLEINIPSAAGNIVRQIDYGLNLDFFSPQVAPDGTITLRIRGQVNQPATAITADSL 665

Query: 349 PS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           P+   +   +A +T+   +G TI+++GLL       + G+P LS +P +GA F   R  +
Sbjct: 666 PNLIDFTNSEAQSTITFKNGQTILMSGLLGSTETTNRSGVPFLSSLPGVGAAFGEKRTEK 725

Query: 406 EETEIFIAATPFLVK 420
            ++++ +  T  +VK
Sbjct: 726 TQSQLLVIITGTVVK 740


>gi|56459478|ref|YP_154759.1| Type II secretory pathway [Idiomarina loihiensis L2TR]
 gi|56178488|gb|AAV81210.1| Type II secretory pathway [Idiomarina loihiensis L2TR]
          Length = 557

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 116/261 (44%), Gaps = 34/261 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFVSE------GGDFS 246
           QV L+  I EV  +     G+Q  I  S   SG +  F  DF G   S       GG F 
Sbjct: 284 QVILEARIIEVTLND----GYQQGINWSDIYSG-NAGFGVDFNGVTPSNATSAAIGGLFG 338

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----- 301
           +    D  +F  ++  L+    ++ L+ P ++A + Q A    G    + T  +S     
Sbjct: 339 LTYTDDGNNFSGMIEMLQTQGTVQVLSNPRVSASNNQKAVIKIGEDEYFVTDVTSRTVLN 398

Query: 302 TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRI-----QTEVSEPVIGVNAGD-- 347
           TG  S +  D        G+ L  TP +   G + L +     +T   E VI V+  +  
Sbjct: 399 TGGASSSDSDIEFTPFFSGISLDVTPQISDDGEVILHVHPSVVETSEQEKVITVSGEESV 458

Query: 348 MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           +P  R  +R++DT V+  +G  +VL GL++    +    +PLL  IP+LG LF N R  +
Sbjct: 459 LPLARSNIRESDTIVKARNGEIVVLGGLMQTTNSEEVGKVPLLGDIPLLGELFTNRRNRQ 518

Query: 406 EETEIFIAATPFLVKPVAMRD 426
           E+ E+ I   P +V     RD
Sbjct: 519 EKKELVILLKPTVVGVDTWRD 539


>gi|300114921|ref|YP_003761496.1| general secretion pathway protein D [Nitrosococcus watsonii C-113]
 gi|299540858|gb|ADJ29175.1| general secretion pathway protein D [Nitrosococcus watsonii C-113]
          Length = 833

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 17/242 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------ADFGGKFVSEGGDFSV 247
           QV ++ TIAEV      Q G Q   T   +    +          + G + +  GG F+ 
Sbjct: 541 QVLVEATIAEVALTGSLQYGLQWYFTNDLASGQGAGGQGALPALGEGGLQALMAGGGFTY 600

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---HLYKTVSSSTGA 304
               D      +L  L     +  L+ P L A+  Q+A    G Q      +T       
Sbjct: 601 -AFADGGVVRALLRLLASENKVEILSSPQLLALDNQTAEIRVGDQVPIQQGQTTGIGGTT 659

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADT 358
             +   D GV+L  TP V + GR+ + +  EV++      P      G  P++  R   +
Sbjct: 660 QQIRYRDTGVLLTVTPRVNAGGRVTMELTQEVTDVGGTSLPGGATTVGGNPTFLQRNFQS 719

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V + SG TIVL GL++++    + G+P L K+P++G LF  +  +R+ TE+ +  TP +
Sbjct: 720 VVTVQSGETIVLGGLIRNNDAFNQSGVPFLYKLPLIGPLFGTTTRSRQRTELVVLMTPRV 779

Query: 419 VK 420
           V+
Sbjct: 780 VR 781


>gi|330958220|gb|EGH58480.1| general secretion pathway protein D [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 773

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSSTGATSVTT 309
           + +  L ALE     + L+ P+L  ++ Q A    G      Q    T +S+T  +SV  
Sbjct: 570 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTTVNTNASATTLSSVEY 629

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGG 366
              GV+L   P +   G + + IQ +VS+     N+ D+   P    R   T V   SG 
Sbjct: 630 VQTGVILDVVPRINPGGLVYMDIQQQVSDADNSANSTDLNGNPRISTRSVSTQVAAQSGQ 689

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           T++L GL+K D  +    +P L +IP L  LF N+  +++ TE+ +  TP ++
Sbjct: 690 TVLLGGLIKQDNAESVSAVPYLGRIPGLKWLFGNTSKSKDRTELIVLITPRVI 742


>gi|330881978|gb|EGH16127.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 334

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 27/252 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248
           QV ++  I EV  D   Q G Q   TG+ +G       + GG  ++ GG  S+       
Sbjct: 17  QVVIESLIVEVSEDDANQFGVQWQ-TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGL 75

Query: 249 ------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                       G+ +    + +  AL+       L+ P L  +  ++AS   G    + 
Sbjct: 76  NVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 135

Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           T S  TG          +V   + G+ L+  P +   G + L I  EVS      +    
Sbjct: 136 TGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASG 195

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R  DT++ L  G  +VL GLL+D   Q  E +P LS+IP+LG LFRN   +  +T
Sbjct: 196 TVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKT 255

Query: 409 EIFIAATPFLVK 420
            + +   P++++
Sbjct: 256 NLMVFLRPYIIR 267


>gi|322831067|ref|YP_004211094.1| general secretion pathway protein D [Rahnella sp. Y9602]
 gi|321166268|gb|ADW71967.1| general secretion pathway protein D [Rahnella sp. Y9602]
          Length = 659

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 13/199 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHD 311
           +  +L AL  +     LA P++  +  + ASF  G +       +T S     +SV    
Sbjct: 423 WNVLLTALSTSNKNDILATPSIVTLDNKEASFNVGQEVPSLSGSQTTSGDNIYSSVVYKT 482

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            G  L  TP +     + + I+ EVS      N+   P++  R     V + +G T+VL 
Sbjct: 483 VGTKLKVTPQINEGDSVLMEIEQEVSSVDTSTNSSLGPTFNTRTISNAVLVRTGETVVLG 542

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GLL D  ++ K  +PLL  IP +G LFR +     +  + +      ++P  +RD    D
Sbjct: 543 GLLDDSTKETKSKVPLLGDIPWIGNLFRYTSTESAKRNLMV-----FIRPTIIRD----D 593

Query: 432 DHYSVEDDAKAFFFNRVNK 450
           + YS   + K   F ++ K
Sbjct: 594 EVYSSISNKKYSHFQKIQK 612


>gi|88704137|ref|ZP_01101852.1| General secretion pathway protein D [Congregibacter litoralis KT71]
 gi|88701964|gb|EAQ99068.1| General secretion pathway protein D [Congregibacter litoralis KT71]
          Length = 696

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 115/278 (41%), Gaps = 52/278 (18%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAADFGGKFV---SEGGDF 245
           QV ++  I E+     + +G Q          GSS   S S A +  G  +   S+GG  
Sbjct: 362 QVLVEAIIVELEVTDGQDLGLQWLFANDSGFYGSSINASDSRARNIAGAILPPDSDGGTG 421

Query: 246 SVKGVLD-----------------------RFSFETVLHALERATAIRTLAEPTLTAISG 282
           S  G  D                         S   +L+ALE  +    L+ P+L  +  
Sbjct: 422 STTGDFDVGNLAAALAGSAGLSLGWGVVGEDLSMTVILNALEEQSNANILSTPSLLTLDN 481

Query: 283 QSASFTSGGQHLYKTVS-SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           Q A  T G Q  + T S ++TG          ++   + G+ L  TP V     + L I+
Sbjct: 482 QEAFITVGQQVPFITGSFTNTGGNNGAQNPFQTIERENVGITLTVTPQVNEGDSVVLEIE 541

Query: 334 TEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            EV+       V    A D+ +   RK  T V    G  +VL GL+KDD+Q  ++ +P+L
Sbjct: 542 QEVNSLTGATLVASAAAADLITNE-RKIRTKVLAEDGRVVVLGGLIKDDVQSTEQRVPIL 600

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
             IP LG LFRN   +  +T + I      ++P  +RD
Sbjct: 601 GDIPYLGRLFRNDAVSVSKTNLMI-----FIRPTIIRD 633


>gi|269140603|ref|YP_003297304.1| Type II secretory pathway, component HofQ [Edwardsiella tarda
           EIB202]
 gi|267986264|gb|ACY86093.1| Type II secretory pathway, component HofQ [Edwardsiella tarda
           EIB202]
 gi|304560390|gb|ADM43054.1| Type IV pilus biogenesis protein PilQ [Edwardsiella tarda FL6-60]
          Length = 409

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 105/235 (44%), Gaps = 14/235 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--AADFGGKFVSEGGDFSVKGVLD 252
           QV L   I  + ++ L+++G +       SG       AAD    + S G  F V  +  
Sbjct: 171 QVQLAAHIVSISQEGLRELGIRWYSGDERSGGQDRLRGAAD---AYFSAG--FQVARIGG 225

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
           + +    L ALER   +  +A P L A  GQ+AS   G +  Y       G +++   + 
Sbjct: 226 Q-TLAVALAALERQDKVAIIASPHLMAAHGQTASIKQGSELPYAVSGGERGVSTMEFKEA 284

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVL 370
            + +  TP VL+   I L +Q   + P   V  GD  +  + K +  T V L  G T +L
Sbjct: 285 VLGMSVTPRVLADAHIELALQISQNMPGRVVRQGDSEALAIDKQEITTQVTLSDGDTAML 344

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAATPFLVKPVA 423
            G+ +   Q    G P L+ +P+LG L R  + R  R E  IFI  TP L+ P +
Sbjct: 345 GGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFI--TPTLLSPAS 397


>gi|89093502|ref|ZP_01166450.1| type 4 fimbrial biogenesis protein PilQ [Oceanospirillum sp. MED92]
 gi|89082192|gb|EAR61416.1| type 4 fimbrial biogenesis protein PilQ [Oceanospirillum sp. MED92]
          Length = 702

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 7/151 (4%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +   +G+ A   SG +  Y+TV    G  S+   D  + L  TP +    RI + 
Sbjct: 551 VSQPKVLTTNGKQAKIESGSEIPYQTVED--GEVSIEFKDVVLSLDVTPRINPGDRIAMD 608

Query: 332 IQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +   +++  IG  +  G++ S    +  TTV +P G TIVL G+ K++  +    +PLL 
Sbjct: 609 LL--ITQDSIGQVLPNGEI-SIDNNELQTTVVVPDGQTIVLGGVFKNETSETINKVPLLG 665

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +PI+G LFRN     E+TE+ I  TP LV+
Sbjct: 666 DLPIMGPLFRNKENQAEKTELLIFITPKLVR 696


>gi|261823291|ref|YP_003261397.1| outer membrane porin HofQ [Pectobacterium wasabiae WPP163]
 gi|261607304|gb|ACX89790.1| type IV pilus secretin PilQ [Pectobacterium wasabiae WPP163]
          Length = 424

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +  + +  T
Sbjct: 258 LMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 317

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +L  GRI L ++   + P   +  GD     +   ++  T V +  G TIVL G+ + 
Sbjct: 318 PDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQ 377

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +     +P+L ++P+ G LFRN        E+ I  TP L+
Sbjct: 378 QKKNSGSQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420


>gi|229590685|ref|YP_002872804.1| general secretion pathway protein D/Q [Pseudomonas fluorescens
           SBW25]
 gi|229362551|emb|CAY49458.1| general secretion pathway protein D/Q [Pseudomonas fluorescens
           SBW25]
          Length = 788

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 34/257 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG----------- 243
           QV ++  I EV  D   + G Q   +G  +G       + GG  +  GG           
Sbjct: 470 QVVIESLIVEVGEDDANEFGVQWQ-SGDLAGKGVIGGTNLGGSGLQTGGLTSIDALPGGL 528

Query: 244 -------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS--------FT 288
                    ++ GV +    + +  AL+       L+ P L  +  ++AS        F 
Sbjct: 529 SVGYLSGTVNIPGVGNVMDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 588

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGV 343
           SG        +S+    +VT  + G+ L+  P +   G + L I  EVS           
Sbjct: 589 SGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQEVSSIDERASSSAT 648

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +AG + + R    DT++ L  G  +VL GLL+D   Q  E +P LS IP LGALFRN R 
Sbjct: 649 SAGVVTNKRA--IDTSILLDDGQIMVLGGLLQDGYSQSNEAVPWLSSIPGLGALFRNERR 706

Query: 404 NREETEIFIAATPFLVK 420
              +T + +   P++++
Sbjct: 707 ATTKTNLMVFLRPYIIR 723


>gi|253699252|ref|YP_003020441.1| general secretion pathway protein D [Geobacter sp. M21]
 gi|251774102|gb|ACT16683.1| general secretion pathway protein D [Geobacter sp. M21]
          Length = 635

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 108/250 (43%), Gaps = 18/250 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLD 252
           QV ++  IAEV  +  K++G Q  +   +S  + S    F   G      G   +   L 
Sbjct: 352 QVFVQAMIAEVSANKAKELGVQWGVIAGASNGTLSTVGTFDPFGAVAGLSGALQLADTLG 411

Query: 253 RFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTG 303
                     F   L AL    A+  L+ P +     + A    G     L  T  +STG
Sbjct: 412 ITPPDGGVALFPATLKALHSNGALNVLSTPNIMTSDNKEAEIFVGENVPFLSGTNLTSTG 471

Query: 304 AT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--RVRKADTT 359
            +  S+   D G++L   P +     I L I  E+S  V        P+     R A T+
Sbjct: 472 LSQQSIERKDTGIILKIKPQISEGEYIKLDIYQEISA-VKDFGTATNPNLGSTKRSAKTS 530

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V + +  T+++ GL++D  Q  +  IPLL  IP+LG LF+  R  R++T + I  TP ++
Sbjct: 531 VVVKNTDTVIIGGLIQDTDQVTESKIPLLGDIPLLGWLFKTKRTTRDKTNLLIMLTPRII 590

Query: 420 KPVAMRDLSR 429
           K    RD++ 
Sbjct: 591 KDA--RDMAE 598


>gi|78484984|ref|YP_390909.1| type II and III secretion system protein [Thiomicrospira crunogena
           XCL-2]
 gi|78363270|gb|ABB41235.1| Type II secretion pathway protein D homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 569

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 113/244 (46%), Gaps = 27/244 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLDR 253
           QV ++ T+ EV      Q G   S   S+SG S   +    G  +S+  +FS+    +  
Sbjct: 300 QVLIEATVVEVELSDQYQAGVDWSAVNSNSGGSSDISQSLLGTNLSKDPNFSINLSSIGT 359

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVT 308
           ++F   +  L++    + L+ P + A++ Q+A        +Y TV     S++  +  VT
Sbjct: 360 WNFNIGIKMLQQFGDAKVLSSPKIMAMNNQAALLKVVNNEVYFTVEVNRESATASSAGVT 419

Query: 309 THD-------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----------AGDMPS 350
           T++        G ++H TP  +S   I L I+  +S  V  VN              +P 
Sbjct: 420 TYETTVHTVPVGFMMHVTP-FISDDEISLNIRPTLSRIVGYVNDPNPDLARENIESKVPI 478

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREET 408
            + R+ D+ + L +  T ++ GL++D     ++G+P LS +P +G LF  R+   ++ E 
Sbjct: 479 IQEREMDSVLRLRNRQTAIIGGLIQDTHDNQRQGVPGLSDLPWIGDLFSYRDDTVSKSEL 538

Query: 409 EIFI 412
            IFI
Sbjct: 539 IIFI 542


>gi|319785509|ref|YP_004144985.1| general secretion pathway protein D [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171397|gb|ADV14935.1| general secretion pathway protein D [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 707

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 111/250 (44%), Gaps = 34/250 (13%)

Query: 195 QVTLKVTIAEVR---------RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           QV L+  IAEV          R   +  G + S++  + G + +    F   + ++    
Sbjct: 439 QVMLEAVIAEVTLNDDLKYGLRWFFENGGMKISVSDVAKGVAAAALPGFNWSYATD---- 494

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVS 299
                    + +  L+AL   T +  ++ PT+ A++ Q A    G Q       +     
Sbjct: 495 ---------NIQVTLNALSSITDVNVISAPTIMALNNQKAVLQVGDQVPIATRQVVDQTL 545

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADT 358
            S+   SV   D GV+L  TP + + GR+ L I+ EVS      ++G D P+ + RK  T
Sbjct: 546 GSSPVVSVEMKDTGVILTVTPRINNAGRVMLDIEQEVSNVTKTTSSGIDSPTIQQRKIQT 605

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V +  G ++ L GL++      +  +P+L  IPI+G  F+    +   TE+ I      
Sbjct: 606 RVLVNDGESLALGGLIQSRNNVDRTQVPILGDIPIIGNAFKQKTDSIGRTELII-----F 660

Query: 419 VKPVAMRDLS 428
           ++P  +RD++
Sbjct: 661 IRPHVVRDIN 670


>gi|326315687|ref|YP_004233359.1| general secretion pathway protein D [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372523|gb|ADX44792.1| general secretion pathway protein D [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 804

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 106/234 (45%), Gaps = 30/234 (12%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G   SI  S+SG  K        +     G++ + G L  F        LE       L+
Sbjct: 502 GNATSIASSASGLGKGLNVAIAPRI---NGNYYL-GALANF--------LENTGDANVLS 549

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS--SSTGA------TSVTTHDYGVVLHFTPTVLSP 325
            P L  +  + A    G    + T S  ++TG+      T+V   D G++L   P +   
Sbjct: 550 TPNLMTLDNEEAQIIIGNNVPFVTGSYANTTGSSTVNPFTTVERKDVGLMLRVRPQINEN 609

Query: 326 GRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           G + L +  EVS+   G  NA + P+   R  ++TV +  G  IVL GLL+D     ++ 
Sbjct: 610 GTVKLSLYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGNVIVLGGLLEDRYSMGQDK 669

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD----DHY 434
           +PL+  +P++G LFRN    R++T + +    FL +PV +RD +  D    D Y
Sbjct: 670 VPLMGDLPVVGGLFRNENRRRQKTNLMV----FL-RPVVIRDTATSDALMMDRY 718


>gi|187925905|ref|YP_001897547.1| general secretion pathway protein D [Burkholderia phytofirmans
           PsJN]
 gi|187717099|gb|ACD18323.1| general secretion pathway protein D [Burkholderia phytofirmans
           PsJN]
          Length = 791

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 33/221 (14%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVS 299
           F V+G         +L AL +      L+ P L  +  + A    G         Y  ++
Sbjct: 493 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSNLT 546

Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYR 352
           S+T  ++  T+D    G+ LH  P +   G + L++ TE S  V G N        P + 
Sbjct: 547 SATATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTNNAATNPAGPEFT 606

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +TV   +G  IVL GL++D+ Q     +PLL  IP +G LFR+ +  R +T + +
Sbjct: 607 KRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNKTNLMV 666

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
               FL +PV + D             A+A   NR + I G
Sbjct: 667 ----FL-RPVIISD----------RGTAQAVTSNRYDYIQG 692


>gi|166713403|ref|ZP_02244610.1| general secretion pathway protein D [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 766

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 138/316 (43%), Gaps = 58/316 (18%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----F 215
           AV  + T L +S    +A  S + V+  L++    QV ++  +AEV      Q G    F
Sbjct: 451 AVAETNTLLVRSTPQSWA--SIRDVIEKLDVM-PMQVHIEAQVAEVNLTGQLQYGVNWYF 507

Query: 216 QHSIT-----GSSSGPSKSFAA------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           ++++T       + GP+   AA      D  G   + G  ++  G     +   ++ AL+
Sbjct: 508 ENAVTTPFDANDNGGPALPSAAGRNIWGDIAGSVTNTGVGWTFLGK----NAAAIISALD 563

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHF 318
           + T +R L  P++   +   A+   G +    + S +TG       +SV   D GV+L  
Sbjct: 564 QVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKV 623

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY------------------RVRKADTTV 360
            P V   G + L I  E+S P      G  P                      R+  T  
Sbjct: 624 RPRVTKDGMVFLDIVQEISTP------GARPDACTAATTTTVNSAACNVDINTRRVKTEA 677

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFIAATPFLV 419
            + SG TI+LAGL+ D       G+P+LSK+P++GALF R +R  R   E+ +  TP +V
Sbjct: 678 AVQSGDTIMLAGLIDDSTTDGSSGVPMLSKLPVVGALFGRKTRDTRRR-EVIVLITPSIV 736

Query: 420 K-PVAMRDLSRPDDHY 434
           + P   R+L+   D Y
Sbjct: 737 RNPQEARNLT---DEY 749


>gi|294142972|ref|YP_003558950.1| general secretion pathway protein D [Shewanella violacea DSS12]
 gi|293329441|dbj|BAJ04172.1| general secretion pathway protein D [Shewanella violacea DSS12]
          Length = 712

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 13/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGA----TSVTT 309
           F  ++ A+   T    LA P++T +  Q ASF  G +   L  + SSS G     T+V  
Sbjct: 447 FAALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSQSSSNGNENPFTTVER 506

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            + GV L   P +     + L I+ EVS  + G  A D+ ++  R+  TTV   SG  +V
Sbjct: 507 KEVGVKLKVIPQINEGSSVKLTIEQEVS-GINGKTAVDV-TFATRRLTTTVMADSGQIVV 564

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ +++Q+  + +P L  +P++G LFR+S  ++++  + I      +KP  +RD
Sbjct: 565 LGGLINEEVQESVQKVPFLGDLPLIGHLFRSSSSSKKKKNLMI-----FIKPTIIRD 616


>gi|218294935|ref|ZP_03495789.1| type II and III secretion system protein [Thermus aquaticus
           Y51MC23]
 gi|218244843|gb|EED11367.1| type II and III secretion system protein [Thermus aquaticus
           Y51MC23]
          Length = 751

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 30/242 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR- 253
           QV L+V I EV+ ++ + +G + +                GG  V+   D  +  + D  
Sbjct: 528 QVNLRVRIQEVQSNLTRSLGLKWNTIA-------------GGNVVASILDSGLSLIFDST 574

Query: 254 -----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                 +    L AL+R    R L +   T +S Q+A   SG   L + V  +       
Sbjct: 575 RSLAALNIVATLDALQRQGLSRALRDVNQTVLSNQTARLQSGETFLIRRVVENR--VERV 632

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTTVELP 363
             D G+++  TP + + G+I L I+ EVS      PV     GD+  +  +   TT+ + 
Sbjct: 633 PFDIGIIVEVTPQITADGQILLNIRAEVSGNVQRNPV----DGDVDRFTKQVVTTTLRVR 688

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G T+VL GL   +  Q  +G+P+L  IP++G LF+       + E+ +  T  ++K  A
Sbjct: 689 DGQTVVLGGLTSQENTQTVQGVPILMDIPLIGELFKQRTGETTDRELLVVITADILKETA 748

Query: 424 MR 425
            R
Sbjct: 749 ER 750


>gi|290968265|ref|ZP_06559808.1| bacterial type II and III secretion system protein [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781747|gb|EFD94332.1| bacterial type II and III secretion system protein [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 394

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 9/164 (5%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHD 311
           FS+   + AL        LA P + A +G++A    G +   L + +++     S++  +
Sbjct: 198 FSWLGQIQALSEQGKAEILASPHIMASNGKAAQILIGDRVPVLKEHLANGEKTASISYEE 257

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIV 369
            GV L++TP +   G +   I+ EVS PV      +M +YR+  R+A T V +    T+V
Sbjct: 258 AGVKLNYTPYIHQDGSVTASIEAEVSTPVW---VPEMKAYRISTRRAKTIVRMKPDKTLV 314

Query: 370 LAGLL-KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           + GL+ K++++  ++ +PLL  IP++G LF++     +ETE+ I
Sbjct: 315 IGGLIGKEEMEHFRK-VPLLGDIPLVGKLFQSRYKTAKETEVVI 357


>gi|88799076|ref|ZP_01114657.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
 gi|88778303|gb|EAR09497.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
          Length = 653

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 121/286 (42%), Gaps = 40/286 (13%)

Query: 187 LLNIAGEDQVTLKVTIA---EVRRDILKQIGFQHSITGSS---------SGPSKSFAADF 234
           ++ + G D  TL V  A   EV +D +  +     + G+S          G S++  +  
Sbjct: 351 IVEVTGNDTDTLGVQWATNPEVVQDGVPFLSVSSEVAGASVGNLAQSVGQGISQAGGSPL 410

Query: 235 GGKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           G       G F   G+ D    R  F   + ALE A+    L+ P++  +    A  T G
Sbjct: 411 GALTSVPAGTF--MGLADPFGNRVDFGVAIQALESASNTNFLSTPSILTLDNSEAVITVG 468

Query: 291 GQHLYKTVSS--STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAG 346
               +KT  S       ++   D G  L   P +   G I L +    E  +  +  +A 
Sbjct: 469 NSVPFKTGGSGDEDNPFTIERQDVGTTLTVIPHIQQNGTIRLEVDQIVESVDETVSYDAS 528

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+ + + R+  T V + SG TIVL GL++D + +L+  +P+L  IPI+G LF++    + 
Sbjct: 529 DVVTKK-RQVTTQVLVNSGETIVLGGLIQDQVSELESRVPVLGYIPIIGHLFKSKSTLKT 587

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           +T + I   P +                 +ED+      NR+N ++
Sbjct: 588 KTNLLIILKPSV-----------------IEDNMDEIRANRLNGVW 616


>gi|152990751|ref|YP_001356473.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
 gi|151422612|dbj|BAF70116.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
          Length = 507

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 19/202 (9%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------STGATSVTTHD 311
           +++ LE+   + TL+ P L  ++ Q A  + G    Y   +S         G  S T   
Sbjct: 305 IINFLEKNGQVITLSNPKLMTLNNQPAIISIGDTINYNVPTSIVISQNGGLGTQSFTPSS 364

Query: 312 Y--GVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGDM----PSYRVRKADTT 359
              G++L+ TP +   G I LRI   +SEP          N   +    P    +K  + 
Sbjct: 365 VFIGILLNITPEITENGEIILRINPSISEPRDPKQLDQTTNENGIRQIAPDISEKKISSV 424

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V++  G T++L GL+ +       G+P+L  IP+LG LFR+   N +  E+     P ++
Sbjct: 425 VKVKDGSTLILGGLISNIKNFTINGVPVLRDIPVLGGLFRSKARNNKRFELVFIIKPRII 484

Query: 420 KPVAMRDLSRPDDHYSVEDDAK 441
           K  +  + S  D  YS+ D AK
Sbjct: 485 KESSTDNYSLKDLGYSIVDHAK 506


>gi|307626976|gb|ADN71280.1| general secretion pathway protein D [Escherichia coli UM146]
          Length = 421

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 31/243 (12%)

Query: 204 EVRRD--ILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVSEGGDFS 246
           +V RD  +++ + F+ S+   S G   SFAA                 G    + GG F 
Sbjct: 186 DVARDQVLIQSLMFETSL---SDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGSF- 241

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTG 303
             G+ D       L A++  +  + ++ P +   SGQ+   + G    +   K    S G
Sbjct: 242 --GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGESAG 299

Query: 304 AT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
                 ++  HD GV L  TP V+  G++ L I T          A D+ + + R+  TT
Sbjct: 300 VNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDIITNQ-RQIQTT 358

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V++  G T++L GL+       +  +P++SKIP++G +F +   + E+  ++I  T  ++
Sbjct: 359 VQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKAXSNEQRIMYILLTAHII 418

Query: 420 KPV 422
           +P+
Sbjct: 419 RPL 421


>gi|94959236|gb|ABF47508.1| GspD [Leptospira biflexa serovar Patoc]
          Length = 595

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 24/259 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           KK++ +L+     QV L+V I E+    L   G        + G   +  A  GG  + +
Sbjct: 311 KKIIKILDTP-RKQVLLEVLIVELSSTDLNDFGIDWRYQELAYGQFNTGLAAQGG-VIDK 368

Query: 242 GGDFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            G  +    L  FS             +L+A         L+ P +  +  Q A    G 
Sbjct: 369 NGRPTNVNTLSGFSLGFIRRGGQQIIGILNANSTNENFNVLSAPQILTLDNQEAEINVGQ 428

Query: 292 QHLYKTVSSSTG-----ATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               +T + + G     A +V   +Y   G+ L FTP +    RI L +  E+   V G+
Sbjct: 429 DVPVRTQNRNAGLGGDNAVTVANFEYRPTGIKLKFTPHINKNNRITLDLYQEIKN-VAGI 487

Query: 344 NA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           ++   G  P++  R   TT+ + +  TIV+ GLL +D Q+  + IP+L +IP+LG LFR 
Sbjct: 488 SSEATGGNPTFNKRDIKTTIVVDNIQTIVIGGLLSNDKQKKVQKIPILGEIPLLGTLFRR 547

Query: 401 SRFNREETEIFIAATPFLV 419
           +     +T + +  TP ++
Sbjct: 548 TTNQNRKTNLMVFLTPHIL 566


>gi|183221062|ref|YP_001839058.1| general secretory pathway protein D [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911156|ref|YP_001962711.1| type II secretory pathway protein D [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775832|gb|ABZ94133.1| Type II secretory pathway component, protein D [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779484|gb|ABZ97782.1| General secretory pathway protein D [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 587

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 24/259 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           KK++ +L+     QV L+V I E+    L   G        + G   +  A  GG  + +
Sbjct: 303 KKIIKILDTP-RKQVLLEVLIVELSSTDLNDFGIDWRYQELAYGQFNTGLAAQGG-VIDK 360

Query: 242 GGDFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            G  +    L  FS             +L+A         L+ P +  +  Q A    G 
Sbjct: 361 NGRPTNVNTLSGFSLGFIRRGGQQIIGILNANSTNENFNVLSAPQILTLDNQEAEINVGQ 420

Query: 292 QHLYKTVSSSTG-----ATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               +T + + G     A +V   +Y   G+ L FTP +    RI L +  E+   V G+
Sbjct: 421 DVPVRTQNRNAGLGGDNAVTVANFEYRPTGIKLKFTPHINKNNRITLDLYQEIKN-VAGI 479

Query: 344 NA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           ++   G  P++  R   TT+ + +  TIV+ GLL +D Q+  + IP+L +IP+LG LFR 
Sbjct: 480 SSEATGGNPTFNKRDIKTTIVVDNIQTIVIGGLLSNDKQKKVQKIPILGEIPLLGTLFRR 539

Query: 401 SRFNREETEIFIAATPFLV 419
           +     +T + +  TP ++
Sbjct: 540 TTNQNRKTNLMVFLTPHIL 558


>gi|120609611|ref|YP_969289.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
 gi|120588075|gb|ABM31515.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
          Length = 810

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 18/185 (9%)

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGA------TSVTTHDYGV 314
           LE       L+ P L  +  + A    G    + T S  +STG+      T+V   D G+
Sbjct: 545 LENTGDANVLSTPNLLTLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVGL 604

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           +L   P +   G + L +  EVS+   G  NA + P+   R  ++TV +  G  IVL GL
Sbjct: 605 MLRVRPQISENGTVKLSLYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGSVIVLGGL 664

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD-- 431
           L+D     ++ +PL+  +P++G LFRN    R++T + +    FL +PV +RD +  D  
Sbjct: 665 LEDRYSMGQDKVPLMGDLPVVGGLFRNENRRRQKTNLMV----FL-RPVVIRDTATSDAL 719

Query: 432 --DHY 434
             D Y
Sbjct: 720 MMDRY 724


>gi|260428676|ref|ZP_05782654.1| general secretion pathway protein D [Citreicella sp. SE45]
 gi|260420270|gb|EEX13522.1| general secretion pathway protein D [Citreicella sp. SE45]
          Length = 320

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 13/237 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDR 253
           QV L+ TIAEV  +    +G +       +G   +  +D     V+  G++     +L R
Sbjct: 82  QVLLEATIAEVTLNDELNVGVRWYF---QNGDVATRFSDLENGGVA--GNYPGFSAILSR 136

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGA-----TSV 307
                 L+AL   T ++ ++ PTL  +  Q      G Q  + +  SS   A     T V
Sbjct: 137 GGANVALNALAAVTDVKVISSPTLMVVDNQEGLLQIGDQVPIARQTSSEANADAVVLTQV 196

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGG 366
              D G++L   P + + G + L+I+ EVS+      +G D P+   RK  T   L  G 
Sbjct: 197 EYRDTGIILKVRPRIGADGAVNLKIEQEVSDVSATRTSGIDSPTISTRKVSTHAVLADGQ 256

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           T+ L GL+++   + +  +P L ++P++G LFR     ++ TE+ I   P +V   A
Sbjct: 257 TLTLGGLVQERDNKTRAEVPGLGRVPVVGTLFRAKDNAKDRTELIIMIRPRVVHNAA 313


>gi|319424897|gb|ADV52971.1| MSHA system outer membrane secretin, MshL [Shewanella putrefaciens
           200]
          Length = 559

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 120/270 (44%), Gaps = 33/270 (12%)

Query: 179 SSSKKVMNLLNIAG---EDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSF---A 231
           S  ++V + LN A    + QV L+  I EV      Q G Q  ++ G     + +F   A
Sbjct: 270 SELRQVRSFLNSAETHLQRQVILEAKILEVTLSDDFQQGIQWENVLGHVGNTNINFGTTA 329

Query: 232 ADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
              G K  S  G     S+KG      F T+++ L+    +  L+ P +TA + Q A   
Sbjct: 330 GTVGNKVTSTLGGVTSLSIKGS----DFTTMINLLDTQGDVDVLSSPRVTASNNQKAVIK 385

Query: 289 SGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ---TE 335
            G    + T  SST   G T VTT          G+ L  TP +   G + L +     +
Sbjct: 386 VGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKDGNVLLHVHPSVID 445

Query: 336 VSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           V E    +   +      +    +R++DT +   SG  +V+ GL+K +  ++   +PLL 
Sbjct: 446 VKEQTKNIKVSNESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENVEVVSQVPLLG 505

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP+LG LF+N    +++TE+ I   P +V
Sbjct: 506 DIPLLGELFKNRSKQKKKTELIILLKPTVV 535


>gi|289668624|ref|ZP_06489699.1| general secretion pathway protein D [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 760

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 44/309 (14%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----F 215
           AV  + T L +S    +  SS + V+  L++    QV ++  IAEV        G    F
Sbjct: 445 AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM-PMQVHIEAQIAEVNLTGELSYGVNWYF 501

Query: 216 QHSIT-----GSSSGPSKSFAA------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           ++++T       S GP+   AA      D  G     G  ++  G     +   V++AL+
Sbjct: 502 ENAVTTPFNADGSGGPALPSAAGRNIWGDIAGSVTGNGVGWTFLGK----NAAAVINALD 557

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHF 318
           R T +R L  P++   +   A+   G +    + S +TG       +SV   D GV+L  
Sbjct: 558 RVTNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKV 617

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY------------RVRKADTTVELPSGG 366
            P V   G + L I  EVS P     A    +               R+  T   + SG 
Sbjct: 618 RPRVTKDGMVFLDIVQEVSTPGARPAACTAATTTTVNSAACNVDINTRRVKTEAAVQSGD 677

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425
           T++LAGL+ D       G+P LSK+P++GALF     +    E+ +  TP +V+ P   R
Sbjct: 678 TMMLAGLIDDSTSDGSAGVPFLSKLPVVGALFGQKTRDNTRREVIVLITPSIVRNPQEAR 737

Query: 426 DLSRPDDHY 434
           +L+   D Y
Sbjct: 738 NLT---DEY 743


>gi|329895109|ref|ZP_08270837.1| General secretion pathway protein D [gamma proteobacterium
           IMCC3088]
 gi|328922510|gb|EGG29849.1| General secretion pathway protein D [gamma proteobacterium
           IMCC3088]
          Length = 672

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 20/191 (10%)

Query: 249 GVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA-- 304
           G +D   S   +L+AL++ +    L+ PTL  +  Q A  T G    + T   ++TG+  
Sbjct: 434 GAIDNDLSMTVILNALKKQSNANILSTPTLLTLDNQEAYITVGQNVPFVTGAYTNTGSGG 493

Query: 305 -------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRK 355
                   ++   + G+ L  TP +     + L I+ EVS  + G++  A D+ +   RK
Sbjct: 494 SGVQNPFQTIERENVGITLTVTPHINDGDSVVLDIEQEVSS-LTGLSSIASDLITNE-RK 551

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V    G T+VL GL+KD++Q   + +P+L  IP+LG LFRN      +T + I   
Sbjct: 552 IQTKVLAGDGKTVVLGGLIKDNVQDGSQRVPVLGSIPLLGRLFRNDAVEVTKTNLLI--- 608

Query: 416 PFLVKPVAMRD 426
              ++P  +RD
Sbjct: 609 --FIRPTIIRD 617


>gi|312897631|ref|ZP_07757048.1| bacterial type II/III secretion system short domain protein
           [Megasphaera micronuciformis F0359]
 gi|310621264|gb|EFQ04807.1| bacterial type II/III secretion system short domain protein
           [Megasphaera micronuciformis F0359]
          Length = 372

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 11/163 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--- 312
            E  LHA         LA+P + A +G  A    G   +       TG     T +Y   
Sbjct: 204 IEARLHAFVSDGKASILAKPHIMATNGTEARIFIG-DRIPVVTERVTGGERYATTEYKEA 262

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVL 370
           G++L +TP + + G +   I  EV  PV      D+ +YRV  R+ DT V + +G  IV+
Sbjct: 263 GILLQYTPYIHTDGTVTANIHGEVGMPVY---VRDLRAYRVATRQVDTQVHIKAGERIVI 319

Query: 371 AGLL-KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            GL+ K++ + L++ +P+L  +P++G LFR+   +++ETE+ I
Sbjct: 320 GGLIGKEETENLRK-VPILGDLPLIGKLFRSRYRSKKETEVII 361


>gi|238921473|ref|YP_002934988.1| protein transport protein HofQ [Edwardsiella ictaluri 93-146]
 gi|238871042|gb|ACR70753.1| protein transport protein HofQ [Edwardsiella ictaluri 93-146]
          Length = 409

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 106/244 (43%), Gaps = 16/244 (6%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD----FGGKFVSEGGDFSVKGV 250
           QV L   I  + ++ L+++G + S     SG  +S   D        + S G  F V  +
Sbjct: 171 QVQLAAHIVSISQEGLRELGIRWS-----SGDQRSRGQDTLRGAADAYFSAG--FQVARI 223

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             + +    L ALER   +  +A P L A  GQ+AS   G +  Y       G +++   
Sbjct: 224 GGQ-TLAVALAALERQDKVAIIASPHLMAAHGQTASIKQGSELPYAVSGGERGVSTMEFK 282

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTI 368
           +  + +  TP +L+  RI L +Q   + P   V  GD  +  + K +  T V L  G T 
Sbjct: 283 EAVLGMSVTPRILADARIELALQISQNMPGRVVRQGDSEALAIDKQEITTQVTLADGDTA 342

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAATPFLVKPVAMRD 426
           +L G+ +   Q    G P L+ +P+LG L R  + R  R E  IFI  T      +  R 
Sbjct: 343 MLGGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSASSLLPRT 402

Query: 427 LSRP 430
           L  P
Sbjct: 403 LRPP 406


>gi|87122896|ref|ZP_01078763.1| type IV pili biogenesis protein PilQ [Marinomonas sp. MED121]
 gi|86161822|gb|EAQ63120.1| type IV pili biogenesis protein PilQ [Marinomonas sp. MED121]
          Length = 390

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 11/229 (4%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKFVSEGGDFSVKGVL 251
           Q+ +   IA+V+  +  QIG +    G  +G + S A+   D      + G  F+V    
Sbjct: 166 QIEISARIAQVQNAVESQIGVEWQ--GQLAGDTLSTASGLVDLATTSSTSGLSFAVAKSD 223

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D  +    L  LE       ++EP +    GQ A   SG +  Y+T  S    T V    
Sbjct: 224 DLLALN--LSFLESNGLANIVSEPKIVTAEGQMAKIESGTEVPYQT--SDDEGTHVEFKQ 279

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            G+ L   P V    ++ L ++  + +  +G     +PS    + +T V + +  T+VL 
Sbjct: 280 AGLTLEVIPFVKQGDKVQLSLK--IYQDAVGEMYNGVPSIETNRINTQVLVGNQETLVLG 337

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G+ +D++ +    +P    +P +GALFR+    +E+ E+ +  TP L++
Sbjct: 338 GIYRDEVWESTSKVPFFGDLPFVGALFRHQAQRQEKVELLVFITPKLLQ 386


>gi|78222195|ref|YP_383942.1| type II and III secretion system secretin [Geobacter
           metallireducens GS-15]
 gi|78193450|gb|ABB31217.1| type II and III secretion system protein:NolW-like
           protein:Secretin/TonB, short-like protein [Geobacter
           metallireducens GS-15]
          Length = 870

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 107/240 (44%), Gaps = 16/240 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGG---KFVSEGGDF-- 245
           E QV ++  I E    + +++G Q  I    +       AD  FGG         G F  
Sbjct: 633 EKQVMIEARIVEASSTVTQELGIQWGIHARDANTIGVTNADVGFGGILTGLAPTAGTFGP 692

Query: 246 -SVKGV-----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
            +  G+     +   S +  L AL     I+ ++ P +  ++ ++A  + G    Y TVS
Sbjct: 693 GAAAGITFGKLISGGSLDLKLSALASGERIKIISSPKVVTLNNKAAKISQGQSIPYSTVS 752

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           +    T     +  + L  TP + S G I ++I+   +        G +P+   ++A T 
Sbjct: 753 AEGTKTEFV--EAALTLEVTPHIASDGSISMKIKA-TNNSAAPAPTGAVPAINKKEATTE 809

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + + +G T V+ G+  D+  Q  +G+P    IP+LG LF++S   + + E+ I  TP +V
Sbjct: 810 LLVRNGETTVIGGIYVDNDSQADQGVPFFKDIPLLGWLFKSSNTQKIKNELLIFITPKIV 869


>gi|146291667|ref|YP_001182091.1| pilus (MSHA type) biogenesis protein MshL [Shewanella putrefaciens
           CN-32]
 gi|145563357|gb|ABP74292.1| pilus (MSHA type) biogenesis protein MshL [Shewanella putrefaciens
           CN-32]
          Length = 558

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 122/270 (45%), Gaps = 33/270 (12%)

Query: 179 SSSKKVMNLLNIAG---EDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSF---A 231
           S  ++V + LN A    + QV L+  I EV      Q G Q  ++ G     + +F   A
Sbjct: 269 SELRQVRSFLNSAETHLQRQVILEAKILEVTLSDDFQQGIQWENVLGHVGNTNINFGTTA 328

Query: 232 ADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
              G K  S  G     S+KG      F T+++ L+    +  L+ P +TA + Q A   
Sbjct: 329 GTVGNKVTSTLGGVTSLSIKGS----DFTTMINLLDTQGDVDVLSSPRVTASNNQKAVIK 384

Query: 289 SGGQHLYKT-VSSST--GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ---TE 335
            G    + T VSS+T  G T VTT          G+ L  TP +   G + L +     +
Sbjct: 385 VGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKDGNVLLHVHPSVID 444

Query: 336 VSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           V E    +   +      +    +R++DT +   SG  +V+ GL+K +  ++   +PLL 
Sbjct: 445 VKEQTKNIKVSNESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENVEVVSQVPLLG 504

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP+LG LF+N    +++TE+ I   P +V
Sbjct: 505 DIPLLGELFKNRSKQKKKTELIILLKPTVV 534


>gi|330963695|gb|EGH63955.1| type III secretion component [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 195

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 16/175 (9%)

Query: 44  IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           I KG K    ++IG  +V+    PVD   V+V++P  AD+ V SP  +Y+FGK  GQ ++
Sbjct: 13  IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKAAGQTSL 70

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I +  +G++   L + +    A +   L+     S  R+      V+  G   ++QD   
Sbjct: 71  IALDSEGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 127

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           A +L+   LS  G+N       +  +N    AG  QV ++V  AEV R  L + G
Sbjct: 128 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYG 175


>gi|94312323|ref|YP_585533.1| type II and III secretion system protein [Cupriavidus metallidurans
           CH34]
 gi|93356175|gb|ABF10264.1| general secretory pathway component, cryptic [Cupriavidus
           metallidurans CH34]
          Length = 783

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 16/191 (8%)

Query: 249 GVLDR-FSFETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGGQHLYKTVS 299
           GV+++      +LHAL + T++  L+ P L  +         GQ+   T+G    Y    
Sbjct: 507 GVINKAIGLGALLHALGQNTSVNLLSTPNLITLENEEAKILIGQNIPITTGS---YAQTG 563

Query: 300 SSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRK 355
           SST  T   T    D G+ L   P +   G + ++I  E S+   G +     P+  VR 
Sbjct: 564 SSTSVTPFQTFDRKDVGITLRVRPQISEGGLVKMQIYQESSQVAPGTLTNPQGPTTNVRS 623

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            +T V +  G  IVL GL++D+     + +PLL  IP LG+LFR     R +T + +   
Sbjct: 624 IETNVLVDDGQIIVLGGLIEDNYGDNVQKVPLLGDIPYLGSLFRYENKTRSKTNLLVFLR 683

Query: 416 PFLVKPVAMRD 426
           P++++     D
Sbjct: 684 PYVMRTTTATD 694


>gi|226356752|ref|YP_002786492.1| secretin [Deinococcus deserti VCD115]
 gi|226318742|gb|ACO46738.1| putative Secretin precursor (GSP D family protein) [Deinococcus
           deserti VCD115]
          Length = 690

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 39/247 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKG 249
           Q+ ++V I E+     + +G              +  A FGG  VS G       F    
Sbjct: 452 QINVQVRIQEITESAARSLGV-------------NLKAGFGGFNVSTGAGGLSAAFDPTQ 498

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ----------------SASFTSGGQH 293
            L  F+    L+ L+     +++ + T+T  SGQ                +AS  SGG+ 
Sbjct: 499 SLVGFNLGATLNTLQNQGLSKSIYDGTITMQSGQRALGSTTDAQNASSTAAASIKSGGRL 558

Query: 294 LYKTVSSSTGATSVTTH-DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS- 350
                S +    ++    DYGV L F +P V   G I LR++ +V++    +NA  +P+ 
Sbjct: 559 EINIPSQAANVPAIQRQIDYGVNLDFFSPQVAPDGTITLRVRGQVNDLQTAINASTIPNL 618

Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
             +   +A TT+   +G T++L+GLL         G+P LS IP++GALF       ++T
Sbjct: 619 LQFTNSEAQTTLTFKNGETLLLSGLLATKESSTNSGVPFLSSIPVVGALFGQQTTRSQKT 678

Query: 409 EIFIAAT 415
           ++ +  T
Sbjct: 679 QLLVVIT 685


>gi|120600401|ref|YP_964975.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. W3-18-1]
 gi|120560494|gb|ABM26421.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. W3-18-1]
          Length = 558

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 120/270 (44%), Gaps = 33/270 (12%)

Query: 179 SSSKKVMNLLNIAG---EDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSF---A 231
           S  ++V + LN A    + QV L+  I EV      Q G Q  ++ G     + +F   A
Sbjct: 269 SELRQVRSFLNSAETHLQRQVILEAKILEVTLSDDFQQGIQWENVLGHVGNTNINFGTTA 328

Query: 232 ADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
              G K  S  G     S+KG      F T+++ L+    +  L+ P +TA + Q A   
Sbjct: 329 GTVGNKVTSTLGGVTSLSIKGS----DFTTMINLLDTQGDVDVLSSPRVTASNNQKAVIK 384

Query: 289 SGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ---TE 335
            G    + T  SST   G T VTT          G+ L  TP +   G + L +     +
Sbjct: 385 VGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKDGNVLLHVHPSVID 444

Query: 336 VSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           V E    +   +      +    +R++DT +   SG  +V+ GL+K +  ++   +PLL 
Sbjct: 445 VKEQTKNIKVSNESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENVEVVSQVPLLG 504

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP+LG LF+N    +++TE+ I   P +V
Sbjct: 505 DIPLLGELFKNRSKQKKKTELIILLKPTVV 534


>gi|297623561|ref|YP_003704995.1| type II and III secretion system protein [Truepera radiovictrix DSM
           17093]
 gi|297164741|gb|ADI14452.1| type II and III secretion system protein [Truepera radiovictrix DSM
           17093]
          Length = 560

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-FAADFGGKFVSEGGDFSVKGVL 251
           E Q+ ++V I EV  +  +++G   ++T +    S + F+ + G  FV     F  +  +
Sbjct: 340 ERQINVQVRIQEVSANASERLGL--NLTAAMDRFSTTLFSGEGGLSFV-----FDAQRAI 392

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
             F+   +L   E     R + +  +T ++   A+  +GG   Y  V    G  +     
Sbjct: 393 AGFNLGAILDVYEEQGLSRRVDDSNVTVLNNGVATLQAGGTQ-YNYVRDEAGGVTRDEIP 451

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           YGV++ FTP V +   + L +   V  P +    G +  +  RKA++ + L  G T+VL 
Sbjct: 452 YGVIVGFTPQVANNNSVILDLCARVDTPSLRDAEGRITEFLTRKANSRITLQPGQTVVLG 511

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           GLL++ +      +P L  IP++G LF  +      TE+ I  T
Sbjct: 512 GLLQNQVVASNRSVPGLGDIPVVGNLFSTNTATELNTELLIIVT 555


>gi|57169056|ref|ZP_00368183.1| general secretory pathway protein D [Campylobacter coli RM2228]
 gi|305432265|ref|ZP_07401428.1| general secretory pathway protein D [Campylobacter coli JV20]
 gi|57019514|gb|EAL56205.1| general secretory pathway protein D [Campylobacter coli RM2228]
 gi|304444613|gb|EFM37263.1| general secretory pathway protein D [Campylobacter coli JV20]
          Length = 472

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 16/187 (8%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+    +F+++++ L ++     L+ P L A++ Q A  + G    Y+   SS G  + T
Sbjct: 269 GLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKESSKGTENGT 328

Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352
           T      +Y    G++L+  P +   G+I LRI   +S+   P       +     P   
Sbjct: 329 TVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 388

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +K  + V++ +  T++L GL+  +  Q    +  LSKIPILG+LFR+   N   TEI  
Sbjct: 389 QKKLSSVVQVENNQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVF 448

Query: 413 AATPFLV 419
             TP +V
Sbjct: 449 IITPSIV 455


>gi|94269217|ref|ZP_01291402.1| type II and III secretion system protein:Secretin/TonB, short-like
           [delta proteobacterium MLMS-1]
 gi|93451297|gb|EAT02179.1| type II and III secretion system protein:Secretin/TonB, short-like
           [delta proteobacterium MLMS-1]
          Length = 557

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 20/198 (10%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSS 300
           GG F++   LD  SF   +  L+    +  L+ P +   + Q A    G    + T VS 
Sbjct: 333 GGVFTLATSLDHSSFHAFIELLKTQGDVHVLSSPRVATTNNQKALIKVGNDEYFVTDVSF 392

Query: 301 STGATSVTTHDY----------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AG 346
           ST  T      Y          G+ L  TPT+     + L I+  VS+          AG
Sbjct: 393 STRTTGTDDTIYPDLELTPFFSGIALDVTPTITDGNEVILHIRPSVSQVRDQTKSFTVAG 452

Query: 347 DMPSY-----RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
              S      R+R++D+ V   SG  I++ GL++D  ++ + G+P L  +P++G LFR  
Sbjct: 453 QTQSLPLALSRMRESDSIVRARSGQVIIIGGLMEDSWREQRAGLPGLGDLPLVGNLFRQQ 512

Query: 402 RFNREETEIFIAATPFLV 419
           R+++ +TE+ I   P +V
Sbjct: 513 RWSQRKTELVILLRPVVV 530


>gi|260774710|ref|ZP_05883614.1| type IV pilus biogenesis protein PilQ [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609366|gb|EEX35517.1| type IV pilus biogenesis protein PilQ [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 454

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 3/164 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+R +    ++ P L   + Q A    G +  Y   +SS GATSV      + L  T
Sbjct: 292 LSALQRESRAEVISSPRLITTNKQPAYIEQGTEIPYLEAASS-GATSVNFKKAVLSLKVT 350

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P + S  R+ L +      P  V+    G+  +   ++  T V + +G TIVL G+ +  
Sbjct: 351 PQITSDNRLILDLNVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETIVLGGIYQHS 410

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +    + +PLL  IP+LG LFR +     ++E+ I  TP +V P
Sbjct: 411 VSDTVDQVPLLGDIPLLGGLFRRTYQQMGKSELLIFVTPTVVAP 454


>gi|330882763|gb|EGH16912.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 215

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 16/176 (9%)

Query: 43  EIGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            I KG K    ++IG  +V+    PVD   V+V++P  AD+ V SP  +Y+FG+  GQ +
Sbjct: 19  NIAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGQAAGQTS 76

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           +I +  DG++   L + +    A +   L+     S  R+      V+  G   ++QD  
Sbjct: 77  LIALDSDGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVG 133

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            A +L+   LS  G+N       +  +N    AG  QV ++V  AEV R  L + G
Sbjct: 134 EATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYG 182


>gi|157738059|ref|YP_001490743.1| general secretion pathway protein D [Arcobacter butzleri RM4018]
 gi|157699913|gb|ABV68073.1| general secretion pathway protein D [Arcobacter butzleri RM4018]
          Length = 478

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 127/269 (47%), Gaps = 36/269 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           QV ++  I EV  +++ +IG  + I  +S  S    + +++  G      G  ++K  +D
Sbjct: 175 QVYVQAKIIEVNNELVNKIGISYGIINASARSDGINAISSNLNG------GSNAIKEAVD 228

Query: 253 ----RFSFETV---------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
               R S   +         L+ L++  A+  ++EP++ AI  + +S   G +   +  S
Sbjct: 229 TLGIRMSDVNIKSGLALGASLNLLQQNGALDIVSEPSILAIDNKESSIYVGEKISVEISS 288

Query: 300 SSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV 353
           + T      T+    D G+ L   P + S  ++ L I T + E +    V+AG  P    
Sbjct: 289 TLTDGGLQRTNYEREDIGLTLKVKPRISSDTKLTLEINT-LLEGIKSTSVSAGQNPDTLK 347

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           ++  T   L +G ++++ GL+++  + +++ +P+L  IP+ G LF+N     ++  + I 
Sbjct: 348 KEIKTAAILNNGESVIIGGLIENKNETIEQKVPVLGDIPLFGELFKNDSKMNKKNNLVII 407

Query: 414 ATPFLV---KPVA-----MRDLSRPDDHY 434
            TP+++   K +      + +L + +D Y
Sbjct: 408 VTPYMIPKSKDITYIREQLSELKKLEDKY 436


>gi|294666157|ref|ZP_06731413.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604073|gb|EFF47468.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 763

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 132/308 (42%), Gaps = 38/308 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           AV  + T L +S    +  SS + V+  L++    QV ++  +AEV        G     
Sbjct: 450 AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM-PMQVHIEAQVAEVNLTGALSYGVNWYF 506

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VLD---RFSF-----ETVLHALERA 266
             + +  S S    FGG  +      ++ G     V D    ++F       ++ AL+  
Sbjct: 507 ENAVNAASDSTTYGFGGAGLPSAAGRNIWGDIAGRVTDGGVAWTFLGKNAAAIISALDTV 566

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTP 320
           + +R L  P++   +   A+   G +    + S +TG  S +++      D GV+L   P
Sbjct: 567 SNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSYSSVQYIDTGVILKVRP 626

Query: 321 TVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMP-SYRVRKADTTVELPSGGTI 368
            V   G + L I  E+S P              VN+         R+  T   + SG T+
Sbjct: 627 RVTKDGMVFLDIVQEISTPGARPAACTAETTTTVNSAACNVDINTRRVKTEAAVQSGDTM 686

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDL 427
           +LAGL+ D       G+P LSK+PI+GALF     N +  E+ +  TP +V+ P   RDL
Sbjct: 687 MLAGLIDDSTTDGSVGVPFLSKLPIVGALFGRKTQNTDRREVIVLITPSIVRNPKESRDL 746

Query: 428 SRPDDHYS 435
           +   D Y+
Sbjct: 747 T---DEYA 751


>gi|222053997|ref|YP_002536359.1| general secretion pathway protein D [Geobacter sp. FRC-32]
 gi|221563286|gb|ACM19258.1| general secretion pathway protein D [Geobacter sp. FRC-32]
          Length = 637

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 111/245 (45%), Gaps = 20/245 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------DFGG-----KFVSEGG 243
           QV ++  IAEV  D  +++G Q  + G +S  + + A        FG      K + E G
Sbjct: 356 QVFVQAMIAEVSIDRARELGVQWGVIGGASNGTVATAGIYDPFGTFGALAPIIKSLGEAG 415

Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--S 300
              S   +    +F  +L AL+   A+  L+ P +     + A    G    + T S  S
Sbjct: 416 IGTSSLNLAGAATFPAILKALQSNGALNVLSTPNIMTSDNKEAEIFVGENVPFLTQSNLS 475

Query: 301 STGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRK 355
           STG     +   D G+ L   P V     + L I  E+S     +N G   D+ + + R 
Sbjct: 476 STGLAQQGIERKDTGITLKIKPMVSEGEYVKLDIYQEISAVKDALNKGAAVDITTTK-RS 534

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A T+V +    T+V+ GL++D  Q+    IP L  IP+LG LF+     R +T + I  T
Sbjct: 535 AKTSVVVKDTDTVVIGGLIQDQDQETINKIPFLGDIPLLGYLFKTKSMKRTKTNLMIILT 594

Query: 416 PFLVK 420
           P+++K
Sbjct: 595 PYIIK 599


>gi|254524408|ref|ZP_05136463.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
 gi|219721999|gb|EED40524.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
          Length = 792

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 20/214 (9%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVS 299
           G  ++ GV    + + + +AL+       L+ P L  +  ++AS   G    +   + V+
Sbjct: 458 GTINLPGVGQILNMKALANALQSRGGANILSTPNLMTLDNEAASIMVGQTVPFVSGRYVT 517

Query: 300 SSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--- 351
              G +     ++   D G+ L   P +   G + L I  EVS     ++A    S    
Sbjct: 518 DGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQEVSS----IDAQSASSTAGI 573

Query: 352 --RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R  DT+V L  G  +VL GLL+D +   ++ +P L KIP+LGALFR+    R +T 
Sbjct: 574 ITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPVLGALFRSDTRKRAKTN 633

Query: 410 IFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKA 442
           + +   P +V+ P A + L+R  D Y    +A+A
Sbjct: 634 LMVFLRPHVVRDPAAGQRLTR--DRYDYMRNAQA 665


>gi|212634883|ref|YP_002311408.1| type II and III secretion system protein:NolW-like protein
           [Shewanella piezotolerans WP3]
 gi|212556367|gb|ACJ28821.1| Type II and III secretion system protein:NolW-like protein
           [Shewanella piezotolerans WP3]
          Length = 688

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 105/248 (42%), Gaps = 24/248 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSF--AADFGGKFVSEGGD------ 244
           QV ++  +  V+ D+ + +G +  +T    + G S S   A D     +    D      
Sbjct: 438 QVLIEARMVTVKDDVAEDLGVRWGVTDQQGTKGTSGSLEGANDIAAGILPSLNDRLNVNL 497

Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                      FSV  + D    +  L ALE+      +A P +   S Q A++   G  
Sbjct: 498 PAAPVNATSIAFSVAKLADGTVLDLELSALEQENKGEIIASPRIMT-SNQKAAYIEQGVE 556

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSY 351
           +    +SS+GAT+VT     + L  TP +    R+   L I  +    V+    G+  S 
Sbjct: 557 IPYVEASSSGATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKVVATPTGEAVSI 616

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++  T V +  G TIVL G+ +  +      +PLL  IP LG +FR++    E  E+ 
Sbjct: 617 DTQRIGTQVLVDHGETIVLGGIYQQQLISRVSKVPLLGDIPYLGFMFRSTSDKNERQELL 676

Query: 412 IAATPFLV 419
           I  TP +V
Sbjct: 677 IFVTPKIV 684


>gi|303252187|ref|ZP_07338355.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302648970|gb|EFL79158.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 190

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 9/148 (6%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           +SG++A    GG+  +       G  SV   ++G+ L     V    RI L +   VS  
Sbjct: 2   LSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDRIRLVLSQSVS-T 59

Query: 340 VIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEGIPLLSKIPIL 394
           + G    VN+  +P +  R++ +T E+ +G + +++GLL K DI+ +K+ +P+L  IPIL
Sbjct: 60  IAGNYEIVNS-RIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK-VPVLGDIPIL 117

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422
           GA FRN+  +RE  E+ + AT  LVKPV
Sbjct: 118 GAFFRNASSSRESKELVVVATVNLVKPV 145


>gi|55981352|ref|YP_144649.1| general secretion pathway protein PilQ [Thermus thermophilus HB8]
 gi|55772765|dbj|BAD71206.1| general secretion pathway protein (PilQ) [Thermus thermophilus HB8]
          Length = 757

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 20/235 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           QV+L+V I EV+ ++ + +G + +SI G +   S     D G   +     F     L  
Sbjct: 533 QVSLRVRIQEVQSNLTRSLGLKWNSIAGGNVAAS---ILDSGLSLI-----FDSTRSLAA 584

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +    L AL++    R L +   T ++ Q+A   SG     + V +          D G
Sbjct: 585 LNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVNDQ--VERVPFDVG 642

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +++  TP + + G+I L I+ E+S      PV     GD+  +  +   TT+ +  G T+
Sbjct: 643 LIVEVTPQITADGQILLNIKAEISGNVQRNPV----DGDVDRFTKQVVTTTLRVKDGETV 698

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           VL GL   +  Q ++G+PLL  IP++G LF+       + E+ +  T  ++K  A
Sbjct: 699 VLGGLTSQESNQSQQGVPLLMDIPLIGELFKQRTNESTDKELLVVITADILKETA 753


>gi|301058098|ref|ZP_07199150.1| general secretion pathway protein D [delta proteobacterium NaphS2]
 gi|300447730|gb|EFK11443.1| general secretion pathway protein D [delta proteobacterium NaphS2]
          Length = 749

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 29/240 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++ TIAEV  D   Q G ++++   ++  + +F A  G    S G  +SV GV +++
Sbjct: 496 QVLIQATIAEVTLDSSTQFGVEYALGHGAAVGNAAFMATLG----SGGLQYSV-GVTNKW 550

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSAS--------FTSGGQHLYKTVSSST--GA 304
             E  L AL     +  ++ P + A   Q A           SG  +    VSS T    
Sbjct: 551 YAE--LTALATKGKLNVISSPHVLASDNQEAKIDVSREIPLASGTTN----VSSGTTISE 604

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTT 359
           T++   D GV+L  TP +   G + + +  EVS     +PV G    + P++  R   TT
Sbjct: 605 TTIEYRDTGVILSVTPHINERGLVTMDVDEEVSNYEGNQPVAG---NEYPTFSKRVVKTT 661

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +  G TI + GL++D   +   G+P L  +P++  L  +     E+ E+ +  TP +V
Sbjct: 662 LTVGHGQTIAIGGLIRDRENEETRGLPCLVDVPVVKYLTGSWNKETEKIELIVLITPRVV 721


>gi|191174167|ref|ZP_03035680.1| bacterial type II and III secretion system protein [Escherichia
           coli F11]
 gi|191174561|ref|ZP_03036057.1| bacterial type II and III secretion system protein [Escherichia
           coli F11]
 gi|300972444|ref|ZP_07171951.1| bacterial type II/III secretion system short domain protein
           [Escherichia coli MS 200-1]
 gi|190905169|gb|EDV64812.1| bacterial type II and III secretion system protein [Escherichia
           coli F11]
 gi|190905585|gb|EDV65211.1| bacterial type II and III secretion system protein [Escherichia
           coli F11]
 gi|300309168|gb|EFJ63688.1| bacterial type II/III secretion system short domain protein
           [Escherichia coli MS 200-1]
          Length = 421

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 31/243 (12%)

Query: 204 EVRRD--ILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVSEGGDFS 246
           +V RD  +++ + F+ S+   S G   SFAA                 G    + GG F 
Sbjct: 186 DVARDQVLIQSLMFETSL---SDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGSF- 241

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTG 303
             G+ D       L A++  +  + ++ P +   SGQ+   + G    +   K    S G
Sbjct: 242 --GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGESAG 299

Query: 304 AT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
                 ++  HD GV L  TP V+  G++ L I T          A D+ + + R+  TT
Sbjct: 300 VNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDIITNQ-RQIQTT 358

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V++  G T++L GL+       +  +P++SKIP++G +F +   + E+  ++I  T  ++
Sbjct: 359 VQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKADSNEQRIMYILLTAHII 418

Query: 420 KPV 422
           +P+
Sbjct: 419 RPL 421


>gi|194365988|ref|YP_002028598.1| general secretion pathway protein D [Stenotrophomonas maltophilia
           R551-3]
 gi|194348792|gb|ACF51915.1| general secretion pathway protein D [Stenotrophomonas maltophilia
           R551-3]
          Length = 793

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 20/214 (9%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGGQHL 294
           G  ++ GV    + + + +AL+       L+ P L  +         GQ+  F SG    
Sbjct: 459 GTINLPGVGQILNMKALANALQSKGGANILSTPNLMTLDNEAASIMVGQTVPFVSGRYVT 518

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--- 351
                S+    ++   D G+ L   P +   G + L I  EVS     ++A    S    
Sbjct: 519 DGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQEVSS----IDAQSANSTVGI 574

Query: 352 --RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R  DT+V L  G  +VL GLL+D +   ++ +P L KIP+LGALFR+    R +T 
Sbjct: 575 ITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPVLGALFRSDTRKRAKTN 634

Query: 410 IFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKA 442
           + +   P +V+ P A + L+R  D Y    +A+A
Sbjct: 635 LMVFLRPHVVRDPAAGQRLTR--DRYDYMRNAQA 666


>gi|307720197|ref|YP_003891337.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978290|gb|ADN08325.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 709

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 114/237 (48%), Gaps = 18/237 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q  ++VT+A+V       +GF+++IT  ++G  K+     GG     G    V  V    
Sbjct: 456 QTLVEVTVADVDMTDTFSLGFEYAITNQNAGLVKNILNITGG-----GSGLGV--VFKGN 508

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATS------ 306
             E+ ++A      +  +++P L  ++ ++ +   G Q   +   VS++   +S      
Sbjct: 509 HLESTINAYAEKKLLDIISKPKLLILNNKTGNINVGTQVPIITSQVSAADLGSSSQPSIN 568

Query: 307 --VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELP 363
             ++  + G++L+ TPT+ S G + + I   +S+  +   +  + P    R   TT  + 
Sbjct: 569 QNISYKNTGIILNITPTINSNGVLTMNISITLSDAQLNDTSTINSPLIINRSLQTTAVVQ 628

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           SG +I+L GL+  +  + K G+PLL  IP +G +F ++     ++E+ I   P ++K
Sbjct: 629 SGDSILLGGLISQNKSKSKGGVPLLKDIPWIGNMFASNSIKTTKSELIILIRPVIIK 685


>gi|126176026|ref|YP_001052175.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS155]
 gi|217971714|ref|YP_002356465.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS223]
 gi|125999231|gb|ABN63306.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS155]
 gi|217496849|gb|ACK45042.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS223]
          Length = 559

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 119/276 (43%), Gaps = 44/276 (15%)

Query: 179 SSSKKVMNLLNIAG---EDQVTLKVTIAEV-----------RRDILKQIGFQHSITGSSS 224
           S  ++V   LN A    + QV L+  I EV             ++L  +G  +   G+S 
Sbjct: 269 SELRQVRTFLNSAESHLQRQVILEAKIIEVTLSDGYQQGIQWDNVLGHVGNTNVNFGTSK 328

Query: 225 GP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           GP  S    +  GG         S+KG      F T+++ L+    +  L+ P +TA + 
Sbjct: 329 GPGLSDKITSAIGGV-----TSLSIKGS----DFTTMINLLDTQGDVDVLSSPRVTASNN 379

Query: 283 QSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRI 332
           Q A    G    + T  SST   G   VTT          G+ L  TP + S G + L +
Sbjct: 380 QKAVIKVGTDEYFVTDVSSTTVGGTPPVTTPQVELTPFFSGIALDVTPQIDSDGNVLLHV 439

Query: 333 Q---TEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
                +V E    +   D      +    +R++DT +   SG  +++ GL+K +  ++  
Sbjct: 440 HPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAASGDVVIIGGLMKSESIEVVS 499

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +PLL  IP LG LF+N    +++TE+ I   P +V
Sbjct: 500 QVPLLGDIPYLGELFKNRSKQKKKTELIILLKPTVV 535


>gi|213024121|ref|ZP_03338568.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 148

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 2/139 (1%)

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V
Sbjct: 7   QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 66

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+
Sbjct: 67  LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 126

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 127 DGKEDERRELVVFITPRLV 145


>gi|324014333|gb|EGB83552.1| bacterial type II and III secretion system protein [Escherichia
           coli MS 60-1]
          Length = 193

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 11/196 (5%)

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            G    + GG F   G+ D       L A++  +  + ++ P +   SGQ+   + G   
Sbjct: 2   LGSALSTAGGSF---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNV 58

Query: 294 LY---KTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
            +   K    S G      ++  HD GV L  TP V+  G++ L I T          A 
Sbjct: 59  PFITGKVTGESAGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQAS 118

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+ + + R+  TTV++  G T++L GL+       +  +P++SKIP++G +F +   + E
Sbjct: 119 DIITNQ-RQIQTTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKADSNE 177

Query: 407 ETEIFIAATPFLVKPV 422
           +  ++I  T  +++P+
Sbjct: 178 QRIMYILLTAHIIRPL 193


>gi|313200626|ref|YP_004039284.1| type II and iii secretion system protein [Methylovorus sp. MP688]
 gi|312439942|gb|ADQ84048.1| type II and III secretion system protein [Methylovorus sp. MP688]
          Length = 645

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 103/196 (52%), Gaps = 14/196 (7%)

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYK 296
           F S+ G FS+   +        L+ L++ T    LA P +   + + A    G +  +  
Sbjct: 392 FNSDLGVFSISDPV------LALNLLQQDTDTNLLANPRIRVKNREKAKIHVGDRIPVLT 445

Query: 297 TVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYR 352
           ++++STG  + SV+  + G+ L   PTVL    + +++  EVS     I  ++G + +Y 
Sbjct: 446 SIANSTGFVSQSVSYIEVGIKLDVEPTVLLNDEVSIKVGLEVSNQTDKITSSSGTV-TYT 504

Query: 353 V--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R A+T + L +G T VLAGLL+DD Q++   +P L+ +P++G LF +   +R + EI
Sbjct: 505 IGTRNANTMLRLKNGETQVLAGLLRDDEQKISNKVPGLANLPLIGKLFTDRNTDRTKKEI 564

Query: 411 FIAATPFLVKPVAMRD 426
            +  TP ++  +   D
Sbjct: 565 ALLITPRIISNITPAD 580


>gi|325295622|ref|YP_004282136.1| type II and III secretion system protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066070|gb|ADY74077.1| type II and III secretion system protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 506

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 125/270 (46%), Gaps = 38/270 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGS----SSGPSKSFAADFGG 236
           K+ ++ +N   + QV ++  I EV+ D   ++G     +T S    S G   + + + G 
Sbjct: 238 KEFIDTINGISDRQVLIEAKIVEVKLDKRNELGINWKYLTFSNFLGSGGEYNTISFNSGA 297

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-- 294
               EG  F +  V    +F  +L  L +   +  L+ P + A++GQ A    G  +L  
Sbjct: 298 ---PEGKPFQLSIVKVNNTFSGLLGILSQFGKVNVLSSPRILAMNGQPAMIKVGRDYLAI 354

Query: 295 YKTVSSSTGA----------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           Y+T ++ST +                 S+ T   GVVL   P +   G I L I   +S 
Sbjct: 355 YRTQTTSTTSTSSQTATTLTTEEVTTNSILTE--GVVLTIIPKIDDKGNIILNISPAISS 412

Query: 339 ---PVIGVNAGDMPSY-------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
              P+I  + G+   +        +R+ +T V + +G T++L GL+     + KEG+P+L
Sbjct: 413 LDSPLITGSTGETTDFINKVYSVNIRQLNTVVRVKNGQTVILGGLIAKSKSKEKEGVPIL 472

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFL 418
             IP+LG  F+++     +TE+ I  TP++
Sbjct: 473 QDIPLLGNAFKSTSTISSKTELVIMLTPYV 502


>gi|83858602|ref|ZP_00952124.1| general secretion proteinD [Oceanicaulis alexandrii HTCC2633]
 gi|83853425|gb|EAP91277.1| general secretion proteinD [Oceanicaulis alexandrii HTCC2633]
          Length = 658

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 21/191 (10%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT------ 309
            E  L+ L+  T I  ++ P + A+  Q A    G Q    T S    A SVT       
Sbjct: 459 IEATLNMLDAVTEIEVISRPNVMALHNQQAELQVGDQVPVITQS----AVSVTNPDAPIV 514

Query: 310 -----HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELP 363
                 D GV+L  TP V + G + + I  EVS  V   ++G D P+ R R+  +T+ +P
Sbjct: 515 NQTAYRDTGVILSVTPHVRAGGIVEIDITQEVSSVVQTSSSGIDSPTIRQRRITSTLLVP 574

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SG ++ L GL+       + G+P+L ++P++G +F +   + + TE+ I     L+KP  
Sbjct: 575 SGQSVALGGLIATTRTTNERGVPVLRELPVVGRVFGSDSESVDRTELVI-----LLKPTV 629

Query: 424 MRDLSRPDDHY 434
           + D S+P D +
Sbjct: 630 ITDPSQPSDVW 640


>gi|15642863|ref|NP_227904.1| comE protein, putative [Thermotoga maritima MSB8]
 gi|4980577|gb|AAD35182.1|AE001695_8 comE protein, putative [Thermotoga maritima MSB8]
          Length = 1285

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 2/150 (1%)

Query: 272  LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            LA P +   SG+ A    G +  Y T ++  G   V   + G+ L  TP V S   I L 
Sbjct: 1138 LASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELD 1197

Query: 332  IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            +  + SEP  G    ++P  R R+A T + + +G TI + GL+++     +  +P L  +
Sbjct: 1198 LFVKASEP--GNYINEVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLPFLGDL 1255

Query: 392  PILGALFRNSRFNREETEIFIAATPFLVKP 421
            P++G  FR    N+E+ ++ I  T  +V+P
Sbjct: 1256 PVIGQFFRTKSENKEKRDLVIFLTVRVVEP 1285


>gi|296157578|ref|ZP_06840413.1| general secretion pathway protein D [Burkholderia sp. Ch1-1]
 gi|295892350|gb|EFG72133.1| general secretion pathway protein D [Burkholderia sp. Ch1-1]
          Length = 789

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 33/221 (14%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVS 299
           F V+G         +L AL +      L+ P L  +  + A    G         Y  ++
Sbjct: 491 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSNLT 544

Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYR 352
           SST  ++  T+D    G+ LH  P +   G + L++ TE S  V G          P + 
Sbjct: 545 SSTATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTTNATTNPAGPEFT 604

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +TV   +G  IVL GL++D+ Q     +PLL  IP +G LFR+ +  R +T + +
Sbjct: 605 KRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNKTNLMV 664

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
               FL +PV + D             A+A   NR + I G
Sbjct: 665 ----FL-RPVIISD----------RGTAQAVTSNRYDYIQG 690


>gi|190574660|ref|YP_001972505.1| putative general secretion pathway protein D [Stenotrophomonas
           maltophilia K279a]
 gi|190012582|emb|CAQ46210.1| putative general secretion pathway protein D [Stenotrophomonas
           maltophilia K279a]
          Length = 792

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 16/212 (7%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVS 299
           G  ++ GV    + + + +AL+       L+ P L  +  ++AS   G    +   + V+
Sbjct: 458 GTINLPGVGQILNMKALANALQSKGGANILSTPNLMTLDNEAASIMVGQTVPFVSGRYVT 517

Query: 300 SSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV- 353
              G +     ++   D G+ L   P +   G + L I  EVS   I   + +  +  + 
Sbjct: 518 DGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQEVSS--IDAQSANSTAGIIT 575

Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R  DT+V L  G  +VL GLL+D +   ++ +P L KIP+LGALFR+    R +T + 
Sbjct: 576 NKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPVLGALFRSDTRKRAKTNLM 635

Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKA 442
           +   P +V+ P A + L+R  D Y    +A+A
Sbjct: 636 VFLRPHVVREPAAGQRLTR--DRYDYMRNAQA 665


>gi|170288656|ref|YP_001738894.1| type II and III secretion system protein [Thermotoga sp. RQ2]
 gi|170176159|gb|ACB09211.1| type II and III secretion system protein [Thermotoga sp. RQ2]
          Length = 1282

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 2/150 (1%)

Query: 272  LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            LA P +   SG+ A    G +  Y T ++  G   V   + G+ L  TP V S   I L 
Sbjct: 1135 LASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELD 1194

Query: 332  IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            +  + SEP  G    ++P  R R+A T + + +G TI + GL+++     +  +P L  +
Sbjct: 1195 LFVKASEP--GNYINEVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLPFLGDL 1252

Query: 392  PILGALFRNSRFNREETEIFIAATPFLVKP 421
            P++G  FR    N+E+ ++ I  T  +V+P
Sbjct: 1253 PVIGQFFRTKSENKEKRDLVIFLTVRVVEP 1282


>gi|46199319|ref|YP_004986.1| competence protein pilQ [Thermus thermophilus HB27]
 gi|17226359|gb|AAL37751.1|AF436067_5 putative secretin PilQ [Thermus thermophilus HB27]
 gi|46196944|gb|AAS81359.1| competence protein pilQ [Thermus thermophilus HB27]
          Length = 757

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 20/235 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           QV L+V I EV+ ++ + +G + +SI G +   S     D G   +     F     L  
Sbjct: 533 QVNLRVRIQEVQSNLTRSLGLKWNSIAGGNVAAS---ILDSGLSLI-----FDSTRSLAA 584

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +    L AL++    R L +   T ++ Q+A   SG     + V +          D G
Sbjct: 585 LNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVNDQ--VERVPFDVG 642

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +++  TP + + G+I L I+ EVS      PV     GD+  +  +   TT+ +  G T+
Sbjct: 643 LIVEVTPQITADGQILLNIKAEVSGNVQRNPV----DGDVDRFTKQVVTTTLRVKDGETV 698

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           VL GL   +  Q ++G+PLL  IP++G LF+       + E+ +  T  ++K  A
Sbjct: 699 VLGGLTSQESNQSQQGVPLLMDIPLIGELFKQRTNESTDKELLVVITADILKEAA 753


>gi|127511146|ref|YP_001092343.1| type IV pilus secretin PilQ [Shewanella loihica PV-4]
 gi|126636441|gb|ABO22084.1| type IV pilus secretin PilQ [Shewanella loihica PV-4]
          Length = 683

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 104/248 (41%), Gaps = 24/248 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSF--AADFGGKFVSEGGD------ 244
           QV ++  +  V+ D+ + +G +  IT    S G S S   A D     V + GD      
Sbjct: 433 QVLIESRMVTVKDDVSEDLGIKWGITDQQGSKGTSGSLEGANDIANGVVPDIGDRLNVNL 492

Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                      F V  + D    +  L ALE+ +    +A P +T  S Q A++   G  
Sbjct: 493 PAAVANPTSIAFHVAKLADGTLLDLELSALEQESKGEIIASPRITT-SNQKAAYIEQGVE 551

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSY 351
           +    S+S+GA +V      + L  TP +    R+   L I  +     +    G   S 
Sbjct: 552 IPYVESASSGAATVQFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPLGQAVSI 611

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++  T V +  G TIVL G+ +  +      +P+L  IP LG LFRN+    E  E+ 
Sbjct: 612 DTQRIGTQVLVDHGETIVLGGIYQQQLINRVSKVPVLGDIPFLGYLFRNTTDKNERQELL 671

Query: 412 IAATPFLV 419
           I  TP ++
Sbjct: 672 IFVTPKII 679


>gi|308272047|emb|CBX28655.1| hypothetical protein N47_G39790 [uncultured Desulfobacterium sp.]
          Length = 667

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 14/178 (7%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------V 307
           +   V+ ALE  +  + LA P +     + A+   G Q     V+SST ATS       +
Sbjct: 443 AVRAVVTALESQSRGKLLAAPHILVSDNREATIQVGQQ--VPIVTSSTLATSTQAAQQTI 500

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---VRKADTTVEL-- 362
              D G++L   P V   G + L I+ EVS      +A  + S     + K + +  L  
Sbjct: 501 QYKDIGIILKVKPQVNDSGLVSLEIKQEVSSFSSLSSADTVTSNEDILINKTEVSTNLVV 560

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             G TI++ GL+++D  + + GIP L KIPILG LF  +    + TE+ I  TP +VK
Sbjct: 561 QDGHTIIIGGLIREDKSKSRTGIPWLVKIPILGFLFGGTNDTNKRTELIILLTPHVVK 618


>gi|218782965|ref|YP_002434283.1| general secretion pathway protein D [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764349|gb|ACL06815.1| General secretion pathway protein D [Desulfatibacillum alkenivorans
           AK-01]
          Length = 716

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 5/176 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGV 314
           V+ A +  + +  L+ P + A + + +    G    Y     T SSS   TS    D GV
Sbjct: 490 VMRAYKNDSDVHILSAPHILATNNEESEIYVGKNVPYVTRQDTSSSSVDYTSYEYRDVGV 549

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L  TP +     + L +  EV+  +        P+   RKADTTV +  G TIV+ GL+
Sbjct: 550 TLKITPQISQERLVRLDVFQEVTRLIETAGTTTQPTTYKRKADTTVIVKDGNTIVIGGLI 609

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429
            +  +     +P L  IP LG  FR+    RE+T +++  TP +++ P   +++S 
Sbjct: 610 DESTEGGTYKVPCLGDIPWLGWAFRSKTEKREKTNLYVFLTPRIIQTPTEAKEISE 665


>gi|95929094|ref|ZP_01311839.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134995|gb|EAT16649.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
          Length = 553

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 25/222 (11%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           GG FS     D   FE  + A++    ++ L+ P ++ ++ Q A    G    + T  SS
Sbjct: 338 GGVFSTTLQFD--DFEAFIEAVKSQGDVQVLSSPRISTLNNQKAVIKVGTDEFFVTDISS 395

Query: 302 TGATSVTTHDY----------GVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVN 344
              T  TT             G+ L  TP +   GR+ L +   VSE V       +   
Sbjct: 396 DTVTGTTTTTTPDITLTPFFSGIALDVTPQISGQGRVTLHVHPTVSEVVDQTKVITVAGQ 455

Query: 345 AGDMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           A  +P     VR++DT VE  SG  +V+ GL+K+   +   G+PLL  IP LG LFR+ +
Sbjct: 456 AQSLPLAFSSVRESDTIVEARSGQVVVIGGLMKNSDTREGAGVPLLGDIPGLGHLFRHQK 515

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
            +  ++E+ I   P +V+    RD    +D  +      + F
Sbjct: 516 NSTSKSELIILLKPLVVE----RDTDWNNDIEAARQRMNSLF 553


>gi|300718766|ref|YP_003743569.1| secretion and pilus transport protein [Erwinia billingiae Eb661]
 gi|299064602|emb|CAX61722.1| secretion and pilus transport protein [Erwinia billingiae Eb661]
          Length = 388

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 5/232 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +Q+ L   I  +  + L+++G +   T +         + F           +    L R
Sbjct: 155 EQIELAAHIVTINEESLRELGVRWGTTSNEQITQALRTSQFTVSLPVADAALTAGFTLAR 214

Query: 254 FS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                 +  L ALE+   +  +A P L     Q AS   G +  Y+  S ++G T+V   
Sbjct: 215 LDGKLLDLELSALEQENKLEIIASPRLFTSHQQPASIKQGTEIPYEVSSGTSGTTTVEFK 274

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTI 368
           +  + +  TP V + GRI L++Q   + P   + +G+     + K +  T V L  G T+
Sbjct: 275 EAVLGMEVTPVVQANGRILLKLQLTQNVPGRTMRSGEGEYLAIDKQEIQTQVTLKDGQTL 334

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L G+ +      +  +PL+  IPILG+LFR     ++  E+ I  TP L++
Sbjct: 335 ALGGIFQRSTASGQRKVPLIGDIPILGSLFRYDINEQKRRELVIFITPRLIR 386


>gi|253998552|ref|YP_003050615.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
 gi|253985231|gb|ACT50088.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
          Length = 650

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 94/167 (56%), Gaps = 8/167 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVL 316
           L+ L++ T    LA P +   + + A    G +  +  ++++STG  + SV+  + G+ L
Sbjct: 408 LNLLQQDTDTNLLANPRIRVKNREKAKIHVGDRIPVLTSIANSTGFVSQSVSYIEVGIKL 467

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAG 372
              PT+L    + +++  EVS     I  ++G + +Y +  R A+T + L +G T VLAG
Sbjct: 468 DVEPTILLNDDVSIKVGLEVSNQTDKITSSSGTV-TYTIGTRNANTILRLKNGETQVLAG 526

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           LL+DD Q++   +P L+K+P++G LF +   +R + EI +  TP +V
Sbjct: 527 LLRDDEQKISNRVPGLAKLPLIGKLFTDRSTDRTKKEIALLITPRIV 573


>gi|281412148|ref|YP_003346227.1| type II and III secretion system protein [Thermotoga naphthophila
            RKU-10]
 gi|281373251|gb|ADA66813.1| type II and III secretion system protein [Thermotoga naphthophila
            RKU-10]
          Length = 1282

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 2/150 (1%)

Query: 272  LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            LA P +   SG+ A    G +  Y T ++  G   V   + G+ L  TP V S   I L 
Sbjct: 1135 LASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELD 1194

Query: 332  IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            +  + SEP  G    ++P  R R+A T + + +G TI + GL+++     +  +P L  +
Sbjct: 1195 LFVKASEP--GNYINEVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLPFLGDL 1252

Query: 392  PILGALFRNSRFNREETEIFIAATPFLVKP 421
            P++G  FR    N+E+ ++ I  T  +V+P
Sbjct: 1253 PVIGQFFRTKSENKEKRDLVIFLTVKVVEP 1282


>gi|297570326|ref|YP_003691670.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926241|gb|ADH87051.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 514

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 21/240 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKG 249
           QV ++  I E  +++ +++G Q      S    +   +D  G F  + G+     +S+  
Sbjct: 261 QVLIEAHIIETNQEVARELGVQWG----SFWRGQQRVSDAAGGFTYQAGNPIGEQYSLDV 316

Query: 250 VLDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +     F          E  L AL+R   +  L+ P++  +    A   SG +  Y+++ 
Sbjct: 317 LTGEVGFYTASVAGNILEMQLQALQREGKVNILSRPSVATLDNHEAVLESGTEVPYQSIE 376

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
              G TSV   D  + L  TP V+S   I L+I+ +  E  +       P    + A T 
Sbjct: 377 D--GTTSVQYKDAVLRLLVTPQVISRENIKLKIEAQKDEVDLTRTVMGNPFIIKKLAQTN 434

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +  G T+V+AGL K+       G+PLL  IP LG  FR+     E  E+ I  TP ++
Sbjct: 435 LIVEDGSTVVIAGLAKERQASSSTGVPLLKNIPGLGVFFRSDARAGEFEELLIFITPRIL 494


>gi|241763436|ref|ZP_04761490.1| general secretion pathway protein D [Acidovorax delafieldii 2AN]
 gi|241367378|gb|EER61699.1| general secretion pathway protein D [Acidovorax delafieldii 2AN]
          Length = 697

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 114/239 (47%), Gaps = 21/239 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGG-DFSVKGVLD 252
           QV ++ +I EV      + G Q + + +   GP             S GG  +++K  L 
Sbjct: 422 QVLIEASIIEVTLGDDLKYGLQWAFSDTHRGGPGSGLIGAL--PSASTGGFSYTLKDTLG 479

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVT 308
             +    L+AL   + I+ ++ P+L  +  Q+A+   G Q   +T  ++     G ++ T
Sbjct: 480 --NMRVTLNALAAKSLIKVISSPSLMVLDNQTATIAVGTQQPIRTGETTNLNTVGNSTTT 537

Query: 309 THDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVE 361
           T+ Y   GV L   P+V S    G  +  ++S+ V  V   D      ++  R+  + V 
Sbjct: 538 TYQYKDTGVQLSVQPSVNS----GDLVTMDISQAVTDVGDEDTVTGQRAFLQRQISSKVA 593

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + SG  +VL GL+KD+    + G+PLLS +P++G LF  +  +   TE+ +  TP +V+
Sbjct: 594 VRSGEAVVLGGLIKDNSSSGRSGVPLLSSLPVVGGLFGATTSSSGRTELLVVITPKVVR 652


>gi|167625988|ref|YP_001676282.1| type IV pilus secretin PilQ [Shewanella halifaxensis HAW-EB4]
 gi|167356010|gb|ABZ78623.1| type IV pilus secretin PilQ [Shewanella halifaxensis HAW-EB4]
          Length = 688

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 102/248 (41%), Gaps = 24/248 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSF--AADFGGKFVSEGGD------ 244
           QV ++  +  V+ D+ + +G +  +T      G S S   A D     V    D      
Sbjct: 438 QVLIEARMVTVKDDVSEDLGVRWGVTDQQGDKGTSGSLEGAGDIANGIVPSLSDRLNVNL 497

Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                      F V  + D    +  L ALE+      +A P +T  S Q A++   G  
Sbjct: 498 PAAVANPTSIAFHVAKLADGTVLDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVE 556

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSY 351
           +    +SS+GAT+VT     + L  TP +    R+   L I  +     +    G   S 
Sbjct: 557 IPYVEASSSGATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGQAVSI 616

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++  T V +  G TIVL G+ +  +      +P+L  IP LG +FRNS    E  E+ 
Sbjct: 617 DTQRIGTQVLVDHGETIVLGGIYQQQLITKVSKVPILGDIPYLGFMFRNSSDKNERQELL 676

Query: 412 IAATPFLV 419
           I  TP +V
Sbjct: 677 IFVTPKIV 684


>gi|325124244|gb|ADY83767.1| putative general secretion pathway protein [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 756

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 18/211 (8%)

Query: 219 ITGSSSGPSKSFAADFG---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           +TG +SG   +  A      GK+  EG D S      R  +  ++ AL+  TA   L+ P
Sbjct: 445 LTGGASGLGSAIGAGSSIALGKY-KEGADGS------RQLYGALIQALKENTASNLLSTP 497

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIG 329
           ++  +  + A    G    + T S +T +T +  +      D GV L   P +   G + 
Sbjct: 498 SIVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGENGTVR 557

Query: 330 LRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           L I+ EVS        A D+ + + R   T V    G T+VL GL+ DD++  ++GIP L
Sbjct: 558 LEIEQEVSNVQASKGQAADLITNK-RAIKTAVLAEHGQTVVLGGLVSDDVEFNRQGIPGL 616

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
           S IP LG LFR+   +  +  + +   P +V
Sbjct: 617 SSIPYLGRLFRSDTRSNVKRNLLVFIHPTIV 647


>gi|304412646|ref|ZP_07394250.1| general secretion pathway protein D [Shewanella baltica OS183]
 gi|307307256|ref|ZP_07586993.1| general secretion pathway protein D [Shewanella baltica BA175]
 gi|304348990|gb|EFM13404.1| general secretion pathway protein D [Shewanella baltica OS183]
 gi|306910311|gb|EFN40743.1| general secretion pathway protein D [Shewanella baltica BA175]
          Length = 704

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S+++ + S     V   
Sbjct: 447 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERK 506

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + GV L   P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL
Sbjct: 507 EVGVKLKVVPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 564

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GL+ +++Q+  + +P L  IPI+G LF++S   + +  + I      +KP  +RD
Sbjct: 565 GGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 615


>gi|257485212|ref|ZP_05639253.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 619

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 107/252 (42%), Gaps = 27/252 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKFV 239
           QV ++  I EV  D   Q G Q   TG+ +G                S S + D     +
Sbjct: 302 QVVIESLIVEVSEDDANQFGVQWQ-TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGL 360

Query: 240 SEG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           + G   G  ++ G+ +    + +  AL+       L+ P L  +  ++AS   G    + 
Sbjct: 361 NVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 420

Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           T S  TG          +V   + G+ L+  P +   G + L I  EVS      +    
Sbjct: 421 TGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASG 480

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R  DT++ L  G  +VL GLL+D   Q  E +P LS+IP+LG LFRN   +  +T
Sbjct: 481 TVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKT 540

Query: 409 EIFIAATPFLVK 420
            + +   P++++
Sbjct: 541 NLMVFLRPYIIR 552


>gi|152998702|ref|YP_001364383.1| general secretion pathway protein D [Shewanella baltica OS185]
 gi|151363320|gb|ABS06320.1| general secretion pathway protein D [Shewanella baltica OS185]
          Length = 704

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 12/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S+++   S     V   
Sbjct: 447 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERK 506

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + GV L   P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL
Sbjct: 507 EVGVKLKVVPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 564

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GL+ +++Q+  + +P L  IPILG LF++S   + +  + I      +KP  +RD
Sbjct: 565 GGLINEEVQESVQKVPFLGDIPILGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 615


>gi|320328774|gb|EFW84773.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 778

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 27/252 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248
           QV ++  I EV  D   Q G Q   TG+ +G       + GG  ++ GG  S+       
Sbjct: 461 QVVIESLIVEVSEDDANQFGVQWQ-TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGL 519

Query: 249 ------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                       G+ +    + +  AL+       L+ P L  +  ++AS   G    + 
Sbjct: 520 NVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 579

Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           T S  TG          +V   + G+ L+  P +   G + L I  EVS      +    
Sbjct: 580 TGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASG 639

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R  DT++ L  G  +VL GLL+D   Q  E +P LS+IP+LG LFRN   +  +T
Sbjct: 640 TVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKT 699

Query: 409 EIFIAATPFLVK 420
            + +   P++++
Sbjct: 700 NLMVFLRPYIIR 711


>gi|320324664|gb|EFW80738.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 778

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 27/252 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248
           QV ++  I EV  D   Q G Q   TG+ +G       + GG  ++ GG  S+       
Sbjct: 461 QVVIESLIVEVSEDDANQFGVQWQ-TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGL 519

Query: 249 ------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                       G+ +    + +  AL+       L+ P L  +  ++AS   G    + 
Sbjct: 520 NVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 579

Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           T S  TG          +V   + G+ L+  P +   G + L I  EVS      +    
Sbjct: 580 TGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASG 639

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R  DT++ L  G  +VL GLL+D   Q  E +P LS+IP+LG LFRN   +  +T
Sbjct: 640 TVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKT 699

Query: 409 EIFIAATPFLVK 420
            + +   P++++
Sbjct: 700 NLMVFLRPYIIR 711


>gi|169634604|ref|YP_001708340.1| putative general secretion pathway protein [Acinetobacter baumannii
           SDF]
 gi|260556356|ref|ZP_05828575.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
           19606]
 gi|169153396|emb|CAP02525.1| putative general secretion pathway protein [Acinetobacter
           baumannii]
 gi|260410411|gb|EEX03710.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
           19606]
          Length = 756

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 96/206 (46%), Gaps = 18/206 (8%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           GS+ G   S A    GK+  EG D S      R  +  ++ AL+  TA   L+ P++  +
Sbjct: 453 GSAIGAGSSIAL---GKY-KEGADGS------RQLYGALIQALKENTASNLLSTPSIVTM 502

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQT 334
             + A    G    + T S +T +T +  +      D GV L   P +   G + L I+ 
Sbjct: 503 DNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGENGTVRLEIEQ 562

Query: 335 EVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           EVS        A D+ + + R   T V    G T+VL GL+ DD++  ++GIP LS IP 
Sbjct: 563 EVSNVQASKGQAADLITNK-RAIKTAVLAEHGQTVVLGGLVSDDVEFNRQGIPGLSSIPY 621

Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
           LG LFR+   +  +  + +   P +V
Sbjct: 622 LGRLFRSDTRSNTKRNLLVFIHPTIV 647


>gi|71735614|ref|YP_274395.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556167|gb|AAZ35378.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 778

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 27/252 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248
           QV ++  I EV  D   Q G Q   TG+ +G       + GG  ++ GG  S+       
Sbjct: 461 QVVIESLIVEVSEDDANQFGVQWQ-TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGL 519

Query: 249 ------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                       G+ +    + +  AL+       L+ P L  +  ++AS   G    + 
Sbjct: 520 NVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 579

Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           T S  TG          +V   + G+ L+  P +   G + L I  EVS      +    
Sbjct: 580 TGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASG 639

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R  DT++ L  G  +VL GLL+D   Q  E +P LS+IP+LG LFRN   +  +T
Sbjct: 640 TVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKT 699

Query: 409 EIFIAATPFLVK 420
            + +   P++++
Sbjct: 700 NLMVFLRPYIIR 711


>gi|94500410|ref|ZP_01306942.1| type 4 fimbrial biogenesis protein PilQ [Oceanobacter sp. RED65]
 gi|94427445|gb|EAT12423.1| type 4 fimbrial biogenesis protein PilQ [Oceanobacter sp. RED65]
          Length = 696

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 5/172 (2%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D +  +  L ALE       +++P +    GQ+A   +G +  Y+  S+S GATS+   +
Sbjct: 525 DEYVLDLELSALESDGKAEIISQPRVITADGQTARIQAGTEIPYEQASAS-GATSIVFKE 583

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
             + L  TP +    RI + +   +++  +G     +PS    + +T V + +G TIVL 
Sbjct: 584 AVLKLEATPQITPDDRILMDLI--INKDAVGEIFNSIPSIDTNELETQVLVNNGETIVLG 641

Query: 372 GLLK-DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           G+ + +DI Q+ +  P    +P++G LFR +    +++E+ I  TP LVK V
Sbjct: 642 GIFQSEDITQVDK-TPFFGDLPVIGQLFRRTTRTEDKSELLIFITPRLVKDV 692


>gi|114561562|ref|YP_749075.1| type IV pilus secretin PilQ [Shewanella frigidimarina NCIMB 400]
 gi|114332855|gb|ABI70237.1| type IV pilus secretin PilQ [Shewanella frigidimarina NCIMB 400]
          Length = 682

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+      +A P +T  S Q +++   G  +    S+S+GA
Sbjct: 503 FHVAKLADGTVLDLELSALEQENKGEIIASPRITT-SNQKSAYIEQGVEIPYVESASSGA 561

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           T+VT     + L  TP +    R+   L I  +     +    G+  +   ++  T V +
Sbjct: 562 TTVTFKKAVLSLRVTPQITPDDRVILDLEITQDSQGTTVATATGEAVAIDTQRIGTQVLV 621

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G TIVL G+ + ++      +P+L  IP++G LFRNS    E  E+ I  TP +V
Sbjct: 622 DNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNSTDTNERQELLIFVTPKIV 678


>gi|295678175|ref|YP_003606699.1| general secretion pathway protein D [Burkholderia sp. CCGE1002]
 gi|295438018|gb|ADG17188.1| general secretion pathway protein D [Burkholderia sp. CCGE1002]
          Length = 811

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 93/221 (42%), Gaps = 33/221 (14%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301
           F V+G         +L AL +      L+ P L  +  + A    G     +T S S   
Sbjct: 495 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIIVGTNVPIQTGSYSNLT 548

Query: 302 TGATSVTTH-----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYR 352
           +G TS   +     D G+ LH  P +   G + L + TE S  V G N        P + 
Sbjct: 549 SGTTSAAFNTFDRVDVGLTLHVKPQITDGGILKLLLYTEDSAIVNGTNNAATNPAGPEFT 608

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +TV   +G  IVL GL++D+ Q     +PLL  IP LG LFR+ +  R +T + +
Sbjct: 609 KRSIQSTVLCDNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWLGQLFRSEQKTRNKTNLMV 668

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
                 ++PV + D           D  +A   NR + I G
Sbjct: 669 -----FLRPVILAD----------RDTTQAVTANRYDYIQG 694


>gi|319761377|ref|YP_004125314.1| general secretion pathway protein d [Alicycliphilus denitrificans
           BC]
 gi|317115938|gb|ADU98426.1| general secretion pathway protein D [Alicycliphilus denitrificans
           BC]
          Length = 767

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 19/279 (6%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L G VR + D +R        L ++ R +Y     ++ +  L+ A   QV ++ +I EV 
Sbjct: 449 LEGNVRVVADDKR-----NALLIRAPRAEY--RRIEQALRELDKA-PTQVLIEASIVEVS 500

Query: 207 RDILKQIG----FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                + G     Q+S++G  +G +     +  G    +   FS   +    +    L+A
Sbjct: 501 LTGNLKYGVEWFIQNSLSGDRTGQAL-LNMNNSGSIGPQQPGFSYTILNKAGAVRATLNA 559

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----HDYGVVLHF 318
           L   + +R L+ P++  +   SA+   G Q   K  ++ T    VT      D GV+L  
Sbjct: 560 LAANSQLRVLSNPSVLVLDNHSATILVGKQQPIKQSTTVTTGNLVTESIVYKDTGVMLSV 619

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           TP+V + G + L I  +V++ V  V+A     S+  R+  + V + SG  IVL G++ ++
Sbjct: 620 TPSVNAGGLVTLDINQQVTD-VGDVDAATGQRSFLTRQIQSRVAVRSGDPIVLGGVMSEN 678

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
                 G+P L  +P+LGALF         TE+ +  TP
Sbjct: 679 QSTGNSGVPGLRDVPVLGALFSTDTTTSARTELLVVLTP 717


>gi|160873279|ref|YP_001552595.1| general secretion pathway protein D [Shewanella baltica OS195]
 gi|160858801|gb|ABX47335.1| general secretion pathway protein D [Shewanella baltica OS195]
 gi|315265506|gb|ADT92359.1| general secretion pathway protein D [Shewanella baltica OS678]
          Length = 705

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S+++ + S     V   
Sbjct: 448 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERK 507

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + GV L   P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL
Sbjct: 508 EVGVKLKVVPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 565

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GL+ +++Q+  + +P L  IPI+G LF++S   + +  + I      +KP  +RD
Sbjct: 566 GGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 616


>gi|91785777|ref|YP_560983.1| putative general secretory pathway protein D [Burkholderia
           xenovorans LB400]
 gi|91689731|gb|ABE32931.1| Putative general secretory pathway protein D [Burkholderia
           xenovorans LB400]
          Length = 814

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 33/221 (14%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVS 299
           F V+G         +L AL +      L+ P L  +  + A    G         Y  ++
Sbjct: 516 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSNLT 569

Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYR 352
           SST  ++  T+D    G+ LH  P +   G + L++ TE S  V G          P + 
Sbjct: 570 SSTATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTTNATTNPAGPEFT 629

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +TV   +G  IVL GL++D+ Q     +PLL  IP +G LFR+ +  R +T + +
Sbjct: 630 KRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNKTNLMV 689

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
               FL +PV + D             A+A   NR + I G
Sbjct: 690 ----FL-RPVIISD----------RGTAQAVTSNRYDYIQG 715


>gi|326572695|gb|EGE22682.1| general secretion pathway protein D [Moraxella catarrhalis BC8]
          Length = 428

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 38/249 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------PSKSFAADFGGKFVSEGGDFSV 247
           Q+ ++  I E+     K +G Q +  G+ +G       P+ S      G         SV
Sbjct: 160 QILIQAVILELSDTDTKNLGVQWA-AGNGAGYGVVNFNPAVSLTNALAG-----NKSLSV 213

Query: 248 KGVL--------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
            G L        ++F +  VLHALE  +    L+ P++ ++  ++AS   G     + + 
Sbjct: 214 LGALFGYKKNDGNKF-YGAVLHALEHTSNANLLSMPSVLSLDNEAASILIG-----QNIP 267

Query: 300 SSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
             TG+          +++  D G+ L  TP +    RI +++  EVS  V   N G + +
Sbjct: 268 VITGSQLDRNGEPFKTISRLDVGISLKVTPQITDDNRINMKVYQEVSNVVNTTNDGVVTN 327

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             V   DT +   +G  IVL GL++D+     +G+P LSK+P LG  F+    + +++ +
Sbjct: 328 KSV--IDTNILSGNGEVIVLGGLMRDETTTTVQGVPKLSKLPFLGKAFKADLDSAKKSNL 385

Query: 411 FIAATPFLV 419
            I   P ++
Sbjct: 386 VIFLQPTII 394


>gi|149909433|ref|ZP_01898088.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Moritella sp. PE36]
 gi|149807543|gb|EDM67492.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Moritella sp. PE36]
          Length = 747

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F + G+ +    +  L ALE       +A P +T    +SA    G +  Y   SSS+GA
Sbjct: 568 FQIAGLANGQILDLELSALEAEQKAEVIASPRITTTDKKSAYIEQGTEIPY-VESSSSGA 626

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           T++      + L  TP +    +I   L+I  +     +    G+  S   +   T V +
Sbjct: 627 TTIAFKKAVLGLWVTPHITPDNKIILDLKINQDTRGEDVKTVGGEAVSIDTQVISTQVLV 686

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G TIVL G+ K +I+Q+   +P+L  IP LG LFR+++   ++ E+ I  TP +V
Sbjct: 687 ENGETIVLGGIFKHEIKQIVTKVPILGDIPWLGVLFRSTKNISQKRELLIFVTPKVV 743


>gi|332531032|ref|ZP_08406951.1| type II and III secretion system protein [Hylemonella gracilis ATCC
           19624]
 gi|332039513|gb|EGI75920.1| type II and III secretion system protein [Hylemonella gracilis ATCC
           19624]
          Length = 740

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 13/207 (6%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           +G  + P   F A  G   V  G +    GVL RF     +  +     + TL       
Sbjct: 465 SGQPAAPGAGFTAGVG---VQRGNNGVALGVLARFLETNRMGNVLSTPNLMTLDNEEAKI 521

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           + GQ+  F +G    Y   +SS+GA     ++   D G+ L   P +   G + + I  E
Sbjct: 522 VIGQNVPFVTG---QYTANNSSSGAVNPFQTIERRDVGLTLAVRPQISENGTVKMVISQE 578

Query: 336 VS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           VS  +P    +A  + + + R  DT+V +  G  IVL GLL+D+    +E +P L  IP 
Sbjct: 579 VSSVDPTSLTSAAGLRTSK-RSIDTSVLVDDGAIIVLGGLLQDESSVSEEKVPGLGSIPG 637

Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420
           LG LFR+   +R++T + +   P +V+
Sbjct: 638 LGWLFRSESGSRKKTNLMVFLRPVIVR 664


>gi|91794695|ref|YP_564346.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
 gi|91716697|gb|ABE56623.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
          Length = 549

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 31/234 (13%)

Query: 221 GSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           G++ GP  S S  +  GG         SVK       F T++  L+    +  L+ P +T
Sbjct: 315 GTAKGPNLSNSITSVLGGV-----TSLSVKNT----DFSTMISLLDTQGDVDVLSSPRVT 365

Query: 279 AISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRI 328
           A + Q A    G    + T  SST   G   +TT +        G+ L  TP + S G +
Sbjct: 366 ASNNQKAVIKVGNDEYFVTKVSSTTVTGTNPITTPEVELTPFFSGIALDVTPQIDSEGNV 425

Query: 329 GLRIQT---EVSEPV----IGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
            L +     +V+E +    I  ++ ++P     +R++DT +   SG  +++ GL+K D  
Sbjct: 426 LLHVHPSVIKVTEQIKDIQINGSSSELPLAQSEIRESDTVIRAASGDVVIIGGLMKSDNV 485

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDD 432
           ++   +PLL  IP+LG +F N     ++TE+ I   P +V     R +L R  D
Sbjct: 486 EMVSKVPLLGDIPLLGEIFTNRSKQMKKTELIIMLKPTVVGVDTWREELKRSKD 539


>gi|126176391|ref|YP_001052540.1| general secretion pathway protein D [Shewanella baltica OS155]
 gi|125999596|gb|ABN63671.1| general secretion pathway protein D [Shewanella baltica OS155]
          Length = 705

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S+++ + S     V   
Sbjct: 448 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERK 507

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + GV L   P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL
Sbjct: 508 EVGVKLKVVPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 565

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GL+ +++Q+  + +P L  IPI+G LF++S   + +  + I      +KP  +RD
Sbjct: 566 GGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 616


>gi|85705572|ref|ZP_01036670.1| type II and III secretion system protein [Roseovarius sp. 217]
 gi|85669997|gb|EAQ24860.1| type II and III secretion system protein [Roseovarius sp. 217]
          Length = 441

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 167/393 (42%), Gaps = 51/393 (12%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           +++++   K I+L V  +V  V VSD T AD  + S   +++FGK VG+ ++I       
Sbjct: 34  ERLTVEQGKSILLPVGDNVDTVFVSDTTVADASISSNNRVFVFGKEVGETSLIATSTYAD 93

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
             +   +++   ++ +   ++       I VE    ++++ G+V     S R  E   T 
Sbjct: 94  SDMTFTVVVTHKLSEIRSVIQSRFPGEQIAVESSRGSLMITGIV----SSDRVRETLVTT 149

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
           L  +       +    +++ L +A  + + L+V + EV R  ++  G   + T +++G  
Sbjct: 150 LESA-------APETTIIDRLRVASSNIIRLEVKLLEVSRTQVENFGIDWNATVTANG-- 200

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA------TAIRTLAEPT-LTAI 280
                 F G         S +GVL     +T   +L  A        I T+A+ T L+ +
Sbjct: 201 -----FFLGT--------SNRGVLSVGKSDTAESSLNAALDVLISNGIATIAQETVLSTV 247

Query: 281 SGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +G+ A F+ GG+    T       SS G   +     G  L FTP++    ++ L I + 
Sbjct: 248 NGEEALFSVGGEIPIPTFIPVDSGSSDGNFQLDFKFIGTSLSFTPSIAPGNKLRLLIDST 307

Query: 336 VS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI-----QQLKEGIPL 387
           +S   +    VN    P+   R   T VEL      V+AG+ ++D      Q    G   
Sbjct: 308 ISSQGQTSSTVNGNVFPNLNTRSFRTNVELSDRQPFVIAGVTRNDTSNDLRQDRGTG--- 364

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           LS+  I+ +L    R      E+ +  TP L +
Sbjct: 365 LSR--IVDSLLGQDRVTANSQELVVIVTPLLTE 395


>gi|24371883|ref|NP_715925.1| type IV pilus biogenesis protein PilQ [Shewanella oneidensis MR-1]
 gi|24345706|gb|AAN53370.1|AE015476_11 type IV pilus biogenesis protein PilQ [Shewanella oneidensis MR-1]
          Length = 684

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+      +A P +T  S Q A++   G  +    S+S+GA
Sbjct: 505 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 563

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSVT     + L  TP +    R+   L I  +     +    G   +   ++  T V +
Sbjct: 564 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 623

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ I  TP +V
Sbjct: 624 DNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680


>gi|217971366|ref|YP_002356117.1| general secretion pathway protein D [Shewanella baltica OS223]
 gi|217496501|gb|ACK44694.1| general secretion pathway protein D [Shewanella baltica OS223]
          Length = 706

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S+++ + S     V   
Sbjct: 449 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERK 508

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + GV L   P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL
Sbjct: 509 EVGVKLKVVPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 566

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GL+ +++Q+  + +P L  IPI+G LF++S   + +  + I      +KP  +RD
Sbjct: 567 GGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 617


>gi|83943483|ref|ZP_00955942.1| general secretion pathway protein D [Sulfitobacter sp. EE-36]
 gi|83845715|gb|EAP83593.1| general secretion pathway protein D [Sulfitobacter sp. EE-36]
          Length = 631

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 117/254 (46%), Gaps = 36/254 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++  I EV  ++ +++G Q  +     GP+    A     F S GG  S+  VL   
Sbjct: 341 QVMIEAAIVEVSGEVAERLGVQLGL-----GPNVPNGAIAASNF-SNGGGVSLGSVLAAV 394

Query: 255 S-------------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                               F  ++ AL ++T+ R L+ P++T +  + A+   G    +
Sbjct: 395 GVPAGSALSTGLTLGAGGNDFGILVQALSQSTSARLLSTPSVTTLDNEPATIVVGQNVPF 454

Query: 296 KTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AG 346
           +T S      ++T  T++   D G+ ++  P + + G + L I+ E+S  +   N   A 
Sbjct: 455 RTGSFATDGNTATPFTTIERRDVGITMNVVPRITAGGVVQLVIEQEISS-LTNANVEGAA 513

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+ + R R  +TTV   + GT+VL GL+ DD       +P L  +P++G LF++      
Sbjct: 514 DLVTNR-RVINTTVMADNRGTVVLGGLITDDRINGSSKVPGLGDLPVVGELFKSRNARNT 572

Query: 407 ETEIFIAATPFLVK 420
           +  +F+   P +++
Sbjct: 573 QRTLFVFLRPTILR 586


>gi|294625731|ref|ZP_06704351.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599967|gb|EFF44084.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 763

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 135/314 (42%), Gaps = 57/314 (18%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----F 215
           AV  + T L +S    +  SS + V+  L++    QV ++  +AEV      Q G    F
Sbjct: 451 AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM-PMQVHIEAQVAEVNLTGELQYGVNWYF 507

Query: 216 QHSITGSS--------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           ++++  ++        S   +S   D  G   + G  ++  G     +   V+ AL+  T
Sbjct: 508 ENAVNAATAAGGAGLPSAAGRSIWGDISGTVTNGGVGWTFLGK----NAAAVISALDTVT 563

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPT 321
            +R L  P++   +   A+   G +    + S +TG       +SV   D GV+L   P 
Sbjct: 564 NLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPR 623

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSY------------------RVRKADTTVELP 363
           V   G + L I  E+S P      G  P                      R+  T   + 
Sbjct: 624 VTKDGMVFLDIVQEISTP------GARPQACTAAATTTVNSAACNVDINTRRVKTEAAVQ 677

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLVK- 420
           SG T++LAGL+ D    +  G+P LSK+P++GALF  +N   NR E  + I  TP +V+ 
Sbjct: 678 SGDTMMLAGLIDDSTTDISAGVPFLSKLPVVGALFGQKNKDTNRREVIVLI--TPTIVRN 735

Query: 421 PVAMRDLSRPDDHY 434
           P   R+L+   D Y
Sbjct: 736 PQEARNLT---DEY 746


>gi|148269971|ref|YP_001244431.1| type II and III secretion system protein [Thermotoga petrophila
            RKU-1]
 gi|147735515|gb|ABQ46855.1| type II and III secretion system protein [Thermotoga petrophila
            RKU-1]
          Length = 1282

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 2/150 (1%)

Query: 272  LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            LA P +   SG+ A    G +  Y T ++  G   V   + G+ L+ TP V S   I L 
Sbjct: 1135 LASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELNITPFVRSDDTIELD 1194

Query: 332  IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            +  + SEP  G    ++P  R R+  T + + +G TI + GL+++     +  +P L  +
Sbjct: 1195 LFVKASEP--GNYINEVPGERTRETQTHLIVKNGSTITIGGLIREVTNVTESKLPFLGDL 1252

Query: 392  PILGALFRNSRFNREETEIFIAATPFLVKP 421
            P++G  FR    N+E+ ++ I  T  +V+P
Sbjct: 1253 PVIGQFFRTKSENKEKRDLIIFLTVRVVEP 1282


>gi|120600493|ref|YP_965067.1| general secretion pathway protein D [Shewanella sp. W3-18-1]
 gi|120560586|gb|ABM26513.1| general secretion pathway protein D [Shewanella sp. W3-18-1]
 gi|319424804|gb|ADV52878.1| general secretion pathway protein D [Shewanella putrefaciens 200]
          Length = 705

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 12/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S+++   S     V   
Sbjct: 448 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERK 507

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + GV L   P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL
Sbjct: 508 EVGVKLKVVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 565

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GL+ +++Q+  + +P L  IP+LG LF++S   + +  + I      +KP  +RD
Sbjct: 566 GGLINEEVQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 616


>gi|114321548|ref|YP_743231.1| general secretion pathway protein D [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227942|gb|ABI57741.1| general secretion pathway protein D [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 673

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 129/299 (43%), Gaps = 40/299 (13%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----------PSKS 229
           S + V+N L+I    QV ++  IAEV +D ++++G Q  +     G           +  
Sbjct: 328 SLRSVLNRLDIR-RAQVLVEAVIAEVSQDRVEELGVQWGVLSEDRGVGLINFGGAAGAGG 386

Query: 230 FAADF--GGKFVSEG--------GDFSVKGVLD-RFSFE--TVLHALERATAIRTLAEPT 276
             AD       +S+G        GD +  GV D R S +   ++ AL   +A   L+ P+
Sbjct: 387 GIADVIRAAGAISDGSTADLPQVGDGAAIGVGDLRGSTQVAALIRALSGDSASNILSTPS 446

Query: 277 LTAISGQSASFTSGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           L  +  + A    G    + T      S    +S+   D GV L   P +     + L I
Sbjct: 447 LMTMDNEEAEIVVGQNVPFITGRAIEDSGQAFSSIQRQDVGVQLRIRPQINEGDTLKLEI 506

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + EVS    G+         +R   T+V + +G  +VL GL+ D ++   + +PLL  +P
Sbjct: 507 EQEVSSVSGGIQGAADLVTDLRSVRTSVMVENGQMVVLGGLIDDQLRTRSQAVPLLGNLP 566

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
            LG LFR  R   E+  + +      ++PV +RD        + ++ A A  +NR+  +
Sbjct: 567 GLGRLFRYDRSQVEKRNLMV-----FLRPVIIRD-------TAAQERATAEPYNRMRAM 613


>gi|297537923|ref|YP_003673692.1| type II and III secretion system protein [Methylotenera sp. 301]
 gi|297257270|gb|ADI29115.1| type II and III secretion system protein [Methylotenera sp. 301]
          Length = 675

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 114/253 (45%), Gaps = 19/253 (7%)

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGG 236
           N   + +V L++ + EV R  L+++G ++            +   S++G   S   +   
Sbjct: 331 NDMADPEVMLEIEVLEVSRSRLQELGVEYPNRIGVNSLIPITTVTSATGVVASSTVNTPT 390

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +   EG     KG  D  S    ++  +    +  L+ P +   + + A    G +    
Sbjct: 391 QLTLEGLLNLSKGRFD-VSPNPAVNFRKTTGDVNLLSNPRIRVRNNEKAKILVGDKVPVI 449

Query: 297 TVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPS 350
           T +S+     + SV   D G+ L   P + +   + ++I  EVS   E  I  N   + +
Sbjct: 450 TTTSTANVGISESVQYVDVGLKLDVEPRITADNYVNIKIALEVSSLGERTITRNGATVYT 509

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R A+T + L  G T VLAGL+ DD ++    +P L  IP++G LF N +  + +TEI
Sbjct: 510 IGTRDANTILRLKDGETQVLAGLISDDERKNASKLPGLGDIPLIGRLFSNQQDQKNKTEI 569

Query: 411 FIAATPFLVKPVA 423
            +A TP ++  +A
Sbjct: 570 VLAITPRIISNIA 582


>gi|257487975|ref|ZP_05642016.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 243

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 16/175 (9%)

Query: 44  IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           I KG K    ++IG  +V+    PVD   V+V++P  AD+ V SP  +Y+FGK  GQ ++
Sbjct: 20  IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKAAGQTSL 77

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I +  +G++   L + +    A +   L+     S  R+      V+  G   ++QD   
Sbjct: 78  IALDSEGRETAALSLAVSSSTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 134

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           A +L+   LS  G+N       +  +N    AG  QV ++V  AEV R  L + G
Sbjct: 135 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYG 182


>gi|190572747|ref|YP_001970592.1| putative general secretion pathway protein D [Stenotrophomonas
           maltophilia K279a]
 gi|190010669|emb|CAQ44278.1| putative general secretion pathway protein D precursor
           [Stenotrophomonas maltophilia K279a]
          Length = 733

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 128/288 (44%), Gaps = 35/288 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--- 216
           AVE + T L +S    +   S ++V+  L++    QV ++  +AEV  D   + G     
Sbjct: 425 AVEETNTLLVRSTPQAW--RSIREVIEKLDVM-PLQVHIEAQVAEVSLDGDLKYGVNWFF 481

Query: 217 ------HSITGSSSGPSKSFAADFGGKFVS-EGGDFSVKGVLDRFSFET---VLHALERA 266
                  ++TG+  G +   AA  GG + S  G     +G+   F+      V+ AL++ 
Sbjct: 482 DNAVAGRALTGALGGVTLPAAA--GGSWSSFAGAATGGEGLGWAFTGHNGAAVVSALDKV 539

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPT 321
           T +R L  P++   +   A+   G +    T + +TG      +SV   D GV+L   P 
Sbjct: 540 TDVRLLQTPSVFVRNNAEATLNVGDKVPINTTTVNTGIGTGTYSSVQYIDTGVILKVRPR 599

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSYRVRKADTTVELPSGGTIVLAG 372
           V   G + L I  EVS      N  D          P    +K  T   + SG TI+LAG
Sbjct: 600 VTRDGTVFLDIVQEVSS---ASNVPDNCNPTERNCNPRISTKKLSTEAAVQSGDTIMLAG 656

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L+ D       GIP LS+IP++GALF         +E+ +  TP +V+
Sbjct: 657 LITDSATDGSSGIPGLSRIPVVGALFGQKSRTSRRSEVIVLLTPSIVR 704


>gi|254515204|ref|ZP_05127265.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
 gi|219677447|gb|EED33812.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
          Length = 682

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 20/187 (10%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGAT------- 305
            S   +L+ALE  +    L+ P+L  +  + A  T G Q  + T S ++TG         
Sbjct: 439 LSMTVILNALEEQSNANILSTPSLLTLDNEEAFITVGQQVPFITGSFTNTGGNNGAQNPF 498

Query: 306 -SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTT 359
            ++   + G+ L  TP V     + L I+ EV+       V    A D+ +   RK  T 
Sbjct: 499 QTIERENVGITLTVTPQVNEGDSVVLEIEQEVNSLTGATLVASAAAADLITNE-RKIRTK 557

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V    G  +VL GL+KDD+Q  ++ +P+L  IP LG LFRN   +  +T + I      +
Sbjct: 558 VLAEDGRIVVLGGLIKDDVQSTEQRVPILGDIPFLGRLFRNDAVSVSKTNLMI-----FI 612

Query: 420 KPVAMRD 426
           +P  +RD
Sbjct: 613 RPTIIRD 619


>gi|146294651|ref|YP_001185075.1| general secretion pathway protein D [Shewanella putrefaciens CN-32]
 gi|145566341|gb|ABP77276.1| general secretion pathway protein D [Shewanella putrefaciens CN-32]
          Length = 703

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 12/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S+++   S     V   
Sbjct: 446 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERK 505

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + GV L   P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL
Sbjct: 506 EVGVKLKVVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 563

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GL+ +++Q+  + +P L  IP+LG LF++S   + +  + I      +KP  +RD
Sbjct: 564 GGLINEEVQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 614


>gi|255595286|ref|XP_002536270.1| Fimbrial assembly protein pilQ precursor, putative [Ricinus
           communis]
 gi|223520239|gb|EEF26113.1| Fimbrial assembly protein pilQ precursor, putative [Ricinus
           communis]
          Length = 536

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
           F     L A E  + I+T++ P +   + Q+A+F +G +  Y+  +SS GATSV+     
Sbjct: 367 FLLNMELSAAESDSKIKTISSPRVITANQQTATFDAGTEIPYQQATSS-GATSVSFKKAT 425

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + ++ TP +    +I L I  EV++  +G     +PS    K  T V + +G T VL G 
Sbjct: 426 LGVNVTPQITPDDKINLDI--EVTKDDVGQIFNGVPSIDTNKVKTKVLVDNGETAVLGGF 483

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L +      + +P  S IP++G LF+++     + E+      F + P  M D
Sbjct: 484 LIESKNDSNQRVPFFSSIPVVGNLFKSTLNTHSKKELL-----FFITPKIMSD 531


>gi|21244259|ref|NP_643841.1| general secretion pathway protein D [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109904|gb|AAM38377.1| general secretion pathway protein D [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 763

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 135/310 (43%), Gaps = 44/310 (14%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----F 215
           AV  + T L +S    +  SS + V+  L++    QV ++  +AEV        G    F
Sbjct: 450 AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM-PMQVHIEAQVAEVNLTGALSYGVNWYF 506

Query: 216 QHSIT-----GSSSGPSKSFAA------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           ++++T       S GP+   AA      D  G+    G  ++  G     +   ++ AL+
Sbjct: 507 ENAVTTPFNADGSGGPALPSAAGRNIWGDIAGRVTDGGVAWTFLGK----NAAAIISALD 562

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHF 318
             + +R L  P++   +   A+   G +    + S +TG  S +++      D GV+L  
Sbjct: 563 TVSNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSYSSVQYIDTGVILKV 622

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY------------RVRKADTTVELPSGG 366
            P V   G + L I  E+S P     A    +               R+  T   + SG 
Sbjct: 623 RPRVTKDGMVFLDIVQEISTPGARPAACTAATTTTVNSAACNVDINTRRVKTEAAVQSGD 682

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425
           T++LAGL+ D       G+P LSK+PI+GALF     N +  E+ +  TP +V+ P   R
Sbjct: 683 TMMLAGLIDDSTTNGSVGVPFLSKLPIVGALFGRKTQNTDRREVIVLITPSIVRNPKESR 742

Query: 426 DLSRPDDHYS 435
           DL+   D Y+
Sbjct: 743 DLT---DEYA 749


>gi|117922327|ref|YP_871519.1| type IV pilus secretin PilQ [Shewanella sp. ANA-3]
 gi|117614659|gb|ABK50113.1| type IV pilus secretin PilQ [Shewanella sp. ANA-3]
          Length = 684

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+      +A P +T  S Q A++   G  +    S+S+GA
Sbjct: 505 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 563

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSVT     + L  TP +    R+   L I  +     +    G   +   ++  T V +
Sbjct: 564 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 623

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ I  TP +V
Sbjct: 624 DNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680


>gi|114045758|ref|YP_736308.1| type IV pilus secretin PilQ [Shewanella sp. MR-7]
 gi|113887200|gb|ABI41251.1| type IV pilus secretin PilQ [Shewanella sp. MR-7]
          Length = 684

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+      +A P +T  S Q A++   G  +    S+S+GA
Sbjct: 505 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 563

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSVT     + L  TP +    R+   L I  +     +    G   +   ++  T V +
Sbjct: 564 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 623

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ I  TP +V
Sbjct: 624 DNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680


>gi|24371766|ref|NP_715808.1| general secretion pathway protein D [Shewanella oneidensis MR-1]
 gi|24345556|gb|AAN53253.1|AE015466_13 general secretion pathway protein D [Shewanella oneidensis MR-1]
          Length = 704

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 12/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S+++   S     V   
Sbjct: 448 FGALVQAVSADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERK 507

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + GV L   P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL
Sbjct: 508 EVGVKLKVVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 565

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GL+ +++Q+  + +P L  IPILG LF++S   + +  + I      +KP  +RD
Sbjct: 566 GGLINEEVQESIQKVPFLGDIPILGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 616


>gi|157963580|ref|YP_001503614.1| pilus (MSHA type) biogenesis protein MshL [Shewanella pealeana ATCC
           700345]
 gi|157848580|gb|ABV89079.1| pilus (MSHA type) biogenesis protein MshL [Shewanella pealeana ATCC
           700345]
          Length = 556

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 113/250 (45%), Gaps = 27/250 (10%)

Query: 195 QVTLKVTIAEVR-RDILKQIGFQHSITGSSSGPSKSF----AADFGGKFVSE-GGDFSVK 248
           QV L+  + EV   D  +Q     S+ G +     SF    AA  G    +  GG  S+K
Sbjct: 285 QVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDISFGTSPAAGLGDTITNALGGVTSIK 344

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSST--GAT 305
             L+   F T++  L+    +  L+ P +TA + Q A    G    + T VSS+T  G T
Sbjct: 345 --LEGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGNT 402

Query: 306 SVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD------MP 349
            VTT +        G+ L  TP +   G + L I     ++ E V  +   D      + 
Sbjct: 403 PVTTPEVELTPFFSGIALDVTPQIDEQGNVLLHIHPSVIDIKEQVKSIKIADSTLELPLA 462

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R++DT ++  SG  +V+ GL+K +  +L   +PLL  IP LG  F N   +  +TE
Sbjct: 463 QSEIRESDTVIKAASGDVVVIGGLMKSENIELVSKVPLLGDIPFLGEAFTNRANSTVKTE 522

Query: 410 IFIAATPFLV 419
           + I   P +V
Sbjct: 523 LVILLKPIVV 532


>gi|113972026|ref|YP_735819.1| type IV pilus secretin PilQ [Shewanella sp. MR-4]
 gi|113886710|gb|ABI40762.1| type IV pilus secretin PilQ [Shewanella sp. MR-4]
          Length = 684

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+      +A P +T  S Q A++   G  +    S+S+GA
Sbjct: 505 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 563

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSVT     + L  TP +    R+   L I  +     +    G   +   ++  T V +
Sbjct: 564 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 623

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ I  TP +V
Sbjct: 624 DNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680


>gi|312880051|ref|ZP_07739851.1| type II and III secretion system protein [Aminomonas paucivorans
           DSM 12260]
 gi|310783342|gb|EFQ23740.1| type II and III secretion system protein [Aminomonas paucivorans
           DSM 12260]
          Length = 576

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 11/191 (5%)

Query: 237 KFVSEGG-DFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           + V  GG D SV       +F +  L ALE A   R LA P++    G+ A         
Sbjct: 373 RIVKPGGLDLSVVAQNPDLNFLDAGLRALETANKGRMLASPSVVVHDGKKAKIALTENVK 432

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-----IGLRIQT-EVSEPVIGVNAGDM 348
           Y +     G  + +    G  + FTPTV   GR     + + ++T EV++ + G     +
Sbjct: 433 YISARDQAGNPTYSEERVGPTIEFTPTV---GRDRVITMEMTLKTGEVTKYIRGGMGEQV 489

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P    R+ ++TV + +G   V+ GL +D     +  IP+L  IP+LG LFRN    +  T
Sbjct: 490 PQTSTREVNSTVRIRNGEPFVVGGLFRDGQTHSENKIPILGDIPLLGELFRNRTTQKIHT 549

Query: 409 EIFIAATPFLV 419
           E+ +   P+L+
Sbjct: 550 EVAMIVIPYLL 560


>gi|113968501|ref|YP_732294.1| general secretion pathway protein D [Shewanella sp. MR-4]
 gi|114045664|ref|YP_736214.1| general secretion pathway protein D [Shewanella sp. MR-7]
 gi|113883185|gb|ABI37237.1| general secretion pathway protein D [Shewanella sp. MR-4]
 gi|113887106|gb|ABI41157.1| general secretion pathway protein D [Shewanella sp. MR-7]
          Length = 700

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 12/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S+++   S     V   
Sbjct: 444 FGALIQAVSADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERK 503

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + GV L   P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL
Sbjct: 504 EVGVKLKVVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 561

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GL+ +++Q+  + +P L  IP+LG LF++S   + +  + I      +KP  +RD
Sbjct: 562 GGLINEEVQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 612


>gi|209515818|ref|ZP_03264681.1| general secretion pathway protein D [Burkholderia sp. H160]
 gi|209503845|gb|EEA03838.1| general secretion pathway protein D [Burkholderia sp. H160]
          Length = 792

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 89/196 (45%), Gaps = 27/196 (13%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVS 299
           F V+G         +L AL +      L+ P L  +  + A    G         Y  ++
Sbjct: 492 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIIVGTNVPIQTGSYSNLT 545

Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------AGDMPS 350
           SS  +T+  T D    G+ LH  P +   G + L++ TE S  V G N      AG  P 
Sbjct: 546 SSATSTAFNTFDRVDIGLTLHVKPQITDGGILKLQLYTEDSAIVNGTNNSTTNPAG--PE 603

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R   +TV   +G  IVL GL++D+ Q     +PLL  IP +G LFR+ +  R +T +
Sbjct: 604 FTKRSIQSTVLCDNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWVGQLFRSEQKTRNKTNL 663

Query: 411 FIAATPFLVKPVAMRD 426
            +    FL +PV + D
Sbjct: 664 MV----FL-RPVILSD 674


>gi|107021570|ref|YP_619897.1| Type II secretion system gspD [Burkholderia cenocepacia AU 1054]
 gi|116688086|ref|YP_833709.1| general secretion pathway protein D [Burkholderia cenocepacia
           HI2424]
 gi|105891759|gb|ABF74924.1| Type II secretion system gspD [Burkholderia cenocepacia AU 1054]
 gi|116646175|gb|ABK06816.1| general secretion pathway protein D [Burkholderia cenocepacia
           HI2424]
          Length = 774

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 22/178 (12%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336
           + GQ+    +G    Y  ++S T + +  T+D    G+ LH  P +   G + L++ TE 
Sbjct: 526 VVGQNVPIATGS---YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTED 582

Query: 337 SEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           S  V G  NA   P++  R   +T+   +G  IVL GL++D+ Q     +PLL  IP +G
Sbjct: 583 SAVVAGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 642

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
            LFR+    R +T + +      ++PV + D S           A+A   NR + I G
Sbjct: 643 QLFRSETKQRAKTNLMV-----FLRPVIISDRST----------AQAVTANRYDYIQG 685


>gi|331010889|gb|EGH90945.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 778

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 107/252 (42%), Gaps = 27/252 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKFV 239
           QV ++  I EV  D   Q G Q   TG+ +G                S S + D     +
Sbjct: 461 QVVIESLIVEVSEDDANQFGVQWQ-TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGL 519

Query: 240 SEG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           + G   G  ++ G+ +    + +  AL+       L+ P L  +  ++AS   G    + 
Sbjct: 520 NVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 579

Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           T S  TG          +V   + G+ L+  P +   G + L I  EVS      +    
Sbjct: 580 TGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASG 639

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R  DT++ L  G  +VL GLL+D   Q  E +P LS+IP+LG LFRN   +  +T
Sbjct: 640 TVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKT 699

Query: 409 EIFIAATPFLVK 420
            + +   P++++
Sbjct: 700 NLMVFLRPYIIR 711


>gi|298530088|ref|ZP_07017490.1| type II and III secretion system protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509462|gb|EFI33366.1| type II and III secretion system protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 504

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 120/269 (44%), Gaps = 17/269 (6%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           E + + + Q+ RN        K +N L+     Q+ ++  I E  +   +++G + S  G
Sbjct: 241 EETNSLMIQATRNDM--ERVHKAINHLD-RPRPQILMEANIVEATQRTARELGVRWS--G 295

Query: 222 SSSGPSKSFAAD--FGGKFVSEGG---DFSVKGVLDRFSFETV---LHALERATAIRTLA 273
               P  SF  +  FG     E G   D  +  +  R     +   L ALER   +  L 
Sbjct: 296 RYVTP-LSFEDEVGFGDLLRDEAGYTGDMDLSVISARLPGSVLYAHLQALERDGEVNILT 354

Query: 274 EPTLTAISGQSASFTSGGQHL-YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            P++T +  Q A FT  GQ + Y+TV    G+ +V   D  + L   P+V+    + + I
Sbjct: 355 SPSITTMDNQMA-FTEHGQRVPYETVDED-GSRTVEFEDAVLRLEVVPSVMEGNHLKMDI 412

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           +    E     +    P  R +  +T + +  G TIV++GL K+ +   + G+  L  +P
Sbjct: 413 RVNKDEVDFTRDVRGQPVIRTKHTETNLVVRDGETIVISGLSKETLSDTERGVMGLRDLP 472

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKP 421
            LG LF++    +E  E  I  TP +++P
Sbjct: 473 GLGWLFKSREQEQEMEEFLIFITPTILEP 501


>gi|304412135|ref|ZP_07393744.1| type IV pilus secretin PilQ [Shewanella baltica OS183]
 gi|307306879|ref|ZP_07586619.1| type IV pilus secretin PilQ [Shewanella baltica BA175]
 gi|304349401|gb|EFM13810.1| type IV pilus secretin PilQ [Shewanella baltica OS183]
 gi|306910457|gb|EFN40887.1| type IV pilus secretin PilQ [Shewanella baltica BA175]
          Length = 683

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+      +A P +T  S Q A++   G  +    S+S+GA
Sbjct: 504 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 562

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSVT     + L  TP +    R+   L I  +     +    G   +   ++  T V +
Sbjct: 563 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 622

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ I  TP +V
Sbjct: 623 NNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 679


>gi|167736415|ref|ZP_02409189.1| general secretion pathway protein D [Burkholderia pseudomallei 14]
 gi|167813490|ref|ZP_02445170.1| general secretion pathway protein D [Burkholderia pseudomallei 91]
 gi|167892116|ref|ZP_02479518.1| general secretion pathway protein D [Burkholderia pseudomallei
           7894]
          Length = 742

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%)

Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322
           L+ P L  +  + A    G Q++      Y  ++S T A +  T+D    G+ LH  P +
Sbjct: 500 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 558

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
              G + L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ 
Sbjct: 559 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 618

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q     +PLL  IP +G LFR+    R++T + +      ++PV + D           +
Sbjct: 619 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 663

Query: 439 DAKAFFFNRVNKIYG 453
            A+A   NR + I G
Sbjct: 664 TAQAVTSNRYDYIQG 678


>gi|126176299|ref|YP_001052448.1| type IV pilus secretin PilQ [Shewanella baltica OS155]
 gi|125999504|gb|ABN63579.1| type IV pilus secretin PilQ [Shewanella baltica OS155]
          Length = 683

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+      +A P +T  S Q A++   G  +    S+S+GA
Sbjct: 504 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 562

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSVT     + L  TP +    R+   L I  +     +    G   +   ++  T V +
Sbjct: 563 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 622

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ I  TP +V
Sbjct: 623 NNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 679


>gi|238899270|ref|YP_002924953.1| putative transport protein, possibly in biosynthesis of type IV
           pilin [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229467031|gb|ACQ68805.1| putative transport protein, possibly in biosynthesis of type IV
           pilin [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 419

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 7/230 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVL 251
           Q+ L   I  +  + L ++G +  +     G     K+F  +   K  +   +F V  + 
Sbjct: 191 QIELSAHIVTMSSENLYELGIRWGMNALEKGNPLGIKNFNINLPLKNTAIAANFQVASIN 250

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
            R   +  L ALE+   +  +A P L     Q+AS   G    Y+ ++      S+   +
Sbjct: 251 SRL-LDLELSALEQENQVDIIASPRLITSHQQTASIKQGTDIPYQ-INGKKENVSIEFKE 308

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL--PSGGTIV 369
             + +  TPT+L   +I L+++   + P + +  G+  +  + K + T ++    G TIV
Sbjct: 309 AVLGMEVTPTILGNDKIRLKLKISQNMPGMAIKRGNAETLAIDKQEITTQIIVKHGETIV 368

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+ +       + +P    IP LGALFR     +   E+ I  TP L+
Sbjct: 369 LGGIFQKKNNHRIDKVPGFGNIPFLGALFRQDVNQQRRRELVIFITPKLI 418


>gi|262280702|ref|ZP_06058485.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
 gi|262257602|gb|EEY76337.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
          Length = 758

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 109/257 (42%), Gaps = 33/257 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-------------- 240
           QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S              
Sbjct: 394 QVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGSAGAA 453

Query: 241 ----------EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                      G  F+V    + R ++  ++ AL+  T    L+ P++  +  + A    
Sbjct: 454 SAIAGGANKGNGATFAVGNFENSRKAYGALIQALKANTKSNLLSTPSIVTMDNEEAYIVV 513

Query: 290 GGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           G    + T S +T +T +  +      D GV L   P +   G + L ++ EVS      
Sbjct: 514 GQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRLEVEQEVSNVQTSK 573

Query: 344 -NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             A D+ + + R   T V    G T+VL GL+ DD++  ++GIP LS IP LG LFR+  
Sbjct: 574 GQAADLITNK-RAIKTAVLAEHGQTVVLGGLVSDDVELSRQGIPGLSSIPYLGRLFRSDS 632

Query: 403 FNREETEIFIAATPFLV 419
            +  +  + +   P +V
Sbjct: 633 RSNTKRNLLVFIHPTIV 649


>gi|317484811|ref|ZP_07943707.1| general secretion pathway protein D [Bilophila wadsworthia 3_1_6]
 gi|316923941|gb|EFV45131.1| general secretion pathway protein D [Bilophila wadsworthia 3_1_6]
          Length = 665

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 31/266 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS-----------SGPSKSFAADFGGKFVSEGG 243
           QV ++  I EV  +     G   +I G++           +G + S ++    K VS   
Sbjct: 367 QVFIEALIMEVSSEASFSFGINWAIGGNTGDAAIVGGVSLNGGAVSLSSSGANKTVSLPA 426

Query: 244 DFSVKGVLD--------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
             S+  +L          ++ +++L+A+   + +  LA P L  +  + AS        +
Sbjct: 427 GVSIGAILKDAITVGNTSYNIQSILNAVRGNSDVDVLATPQLLTLDNEEASVEVVDNIPF 486

Query: 296 KTVSSSTGATSVTTH-----DYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGD 347
              S++      TT      D GV L  TP +   G + L ++ EVS   + +I +  GD
Sbjct: 487 TKESTTRNDNDFTTQSMDYKDVGVKLKITPRISDDGSLRLEVEQEVSRVTQGLITLTNGD 546

Query: 348 M---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P+ R R   TT+ L    T V+ GLL D     +  +P L  IP+LG LF++    
Sbjct: 547 QLVAPTTRKRLVKTTILLQDSQTAVIGGLLDDQKTYNQSEVPGLGSIPVLGWLFKSRNKK 606

Query: 405 REETEIFIAATPFLVKPVA-MRDLSR 429
             +T +FI  TP +++  A   DL+R
Sbjct: 607 STQTNLFIFITPKVIRNAADSADLTR 632


>gi|217975149|ref|YP_002359900.1| type IV pilus secretin PilQ [Shewanella baltica OS223]
 gi|217500284|gb|ACK48477.1| type IV pilus secretin PilQ [Shewanella baltica OS223]
          Length = 683

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+      +A P +T  S Q A++   G  +    S+S+GA
Sbjct: 504 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 562

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSVT     + L  TP +    R+   L I  +     +    G   +   ++  T V +
Sbjct: 563 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 622

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ I  TP +V
Sbjct: 623 NNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 679


>gi|167908851|ref|ZP_02495942.1| general secretion pathway protein D [Burkholderia pseudomallei 112]
          Length = 745

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%)

Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322
           L+ P L  +  + A    G Q++      Y  ++S T A +  T+D    G+ LH  P +
Sbjct: 500 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 558

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
              G + L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ 
Sbjct: 559 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 618

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q     +PLL  IP +G LFR+    R++T + +      ++PV + D           +
Sbjct: 619 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 663

Query: 439 DAKAFFFNRVNKIYG 453
            A+A   NR + I G
Sbjct: 664 TAQAVTSNRYDYIQG 678


>gi|167843644|ref|ZP_02469152.1| general secretion pathway protein D [Burkholderia pseudomallei
           B7210]
          Length = 743

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%)

Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322
           L+ P L  +  + A    G Q++      Y  ++S T A +  T+D    G+ LH  P +
Sbjct: 500 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 558

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
              G + L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ 
Sbjct: 559 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 618

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q     +PLL  IP +G LFR+    R++T + +      ++PV + D           +
Sbjct: 619 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 663

Query: 439 DAKAFFFNRVNKIYG 453
            A+A   NR + I G
Sbjct: 664 TAQAVTSNRYDYIQG 678


>gi|117918609|ref|YP_867801.1| general secretion pathway protein D [Shewanella sp. ANA-3]
 gi|117610941|gb|ABK46395.1| general secretion pathway protein D [Shewanella sp. ANA-3]
          Length = 702

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 12/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S+++   S     V   
Sbjct: 446 FGALVQAVSADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERK 505

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + GV L   P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL
Sbjct: 506 EVGVKLKVVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 563

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GL+ +++Q+  + +P L  IP+LG LF++S   + +  + I      +KP  +RD
Sbjct: 564 GGLINEEVQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 614


>gi|56476309|ref|YP_157898.1| general (Type II) secretion pathway (GSP) D protein [Aromatoleum
           aromaticum EbN1]
 gi|56312352|emb|CAI06997.1| General (Type II) secretion pathway (GSP) D protein [Aromatoleum
           aromaticum EbN1]
          Length = 769

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 4/166 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGV 314
           VL+A+ + + +  ++ P++  +   +A    G Q   ++  +     T +TS+   D GV
Sbjct: 552 VLNAMAQKSLVNVISSPSVMVLDNHTAVIHVGDQQPIRSTQTVTDGGTTSTSIQYKDTGV 611

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           +L  TP+  + G + + I+  V++     +A    S+  R+  + V + +G T++L GL+
Sbjct: 612 MLQVTPSANAGGMVAMDIKQSVTDVGAVDDATGQRSFNQREVASKVAVRTGETVILGGLI 671

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +D     K G+P L  IP+LG LF  +      TE+ +  TP +V+
Sbjct: 672 RDSDTNGKTGVPWLHDIPVLGPLFGTTSDVTRRTELLVMITPRVVQ 717


>gi|332702379|ref|ZP_08422467.1| general secretion pathway protein D [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552528|gb|EGJ49572.1| general secretion pathway protein D [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 677

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 16/184 (8%)

Query: 258 TVLHALERATAIRT----LAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSV 307
           T L+AL  A  I +    ++ P +  +  Q AS T      Y+T  +ST        T  
Sbjct: 447 TNLNALIAAGKINSDFNIISTPQIMTLDNQEASITVAENRPYQTSQTSTLNDLNNIVTQF 506

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPS 364
           T  D G +L  TP +   G I L+I  E SE      GV+   +P  R R  +T V +  
Sbjct: 507 TYRDVGTILKLTPQINEGGMIKLKIFQEFSEVDQAATGVST--LPVTRKRTTETAVVIRE 564

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVA 423
           G T+VL+GL+          +PLL  IP+LG LFR       +T + +  TP +V  P  
Sbjct: 565 GQTVVLSGLIGKSATSSSSRVPLLGDIPLLGWLFRYDTREERKTNLLVFITPRVVDSPEK 624

Query: 424 MRDL 427
            +DL
Sbjct: 625 AQDL 628


>gi|323494823|ref|ZP_08099920.1| type IV pilus assembly protein PilQ [Vibrio brasiliensis LMG 20546]
 gi|323310931|gb|EGA64098.1| type IV pilus assembly protein PilQ [Vibrio brasiliensis LMG 20546]
          Length = 389

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A++       ++ P L   + Q+A    G +  Y   SS  GA+SV      + L  T
Sbjct: 227 LSAMQTEAKAEVISRPKLMTTNKQAAYIEQGSEIPYFE-SSENGASSVAFKKAVLSLKVT 285

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +LS  R+ L +      P  V+   +G+  +   ++ DT V + +G T+VL G+ +  
Sbjct: 286 PQILSDDRLILDLSVTQDRPGNVVKTGSGEAVAINTQRIDTQVLVNNGQTVVLGGIYQHS 345

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +    + +PL   +P++G+LFR S  N  ++E+ I  TP +V
Sbjct: 346 VTDAVDKVPLFGDLPLIGSLFRRSYQNIAKSELLIFVTPTIV 387


>gi|224368216|ref|YP_002602379.1| PilQ [Desulfobacterium autotrophicum HRM2]
 gi|223690932|gb|ACN14215.1| PilQ [Desulfobacterium autotrophicum HRM2]
          Length = 727

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 17/233 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---DFS-VKGV 250
           Q+ +   + EV ++  K +G   S+  S +  +  F         S+G    DFS + G 
Sbjct: 499 QIMISARVVEVNKNFSKSLGIDWSV--SKNNANSGFDVIMNYPVASDGSLGFDFSRIFGT 556

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
               + +  L A E    ++ ++ P +  +  + A    G ++ Y     S G +SV   
Sbjct: 557 --ELALDATLSASEIKGDVKIISSPKILTLDNKKAKIKQGLEYAYLERDDS-GGSSVLFK 613

Query: 311 DYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           +  ++L  TP V    RIG+ +   + +++  V GV     PS    +A+T + +  G T
Sbjct: 614 NIDLLLEVTPHVTPDNRIGMSVLITKNDLASVVDGV-----PSLSTNEAETELLVNDGNT 668

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IV+ G++K+     + G P LS IP+LG LF +      + E+ I  TP +V+
Sbjct: 669 IVIGGIVKNTSSTSETGFPGLSNIPLLGKLFGSDSTEDTKNELLIFITPTIVQ 721


>gi|172059128|ref|YP_001806780.1| general secretion pathway protein D [Burkholderia ambifaria MC40-6]
 gi|171991645|gb|ACB62564.1| general secretion pathway protein D [Burkholderia ambifaria MC40-6]
          Length = 771

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 26/231 (11%)

Query: 214 GFQHSITGSSSGPSKS---FAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERAT 267
           G  +SI   +SG + +    AA+  G  +S+G   ++  + + F  +    +L      +
Sbjct: 446 GLGNSIVNLTSGGTAATTGLAANLAG--LSQG--LNIGWLHNMFGVQGLGALLQYFAGVS 501

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHF 318
               L+ P L  +  + A    G Q++      Y  ++S T + +  T+D    G+ LH 
Sbjct: 502 DANVLSTPNLITLDNEEAKIVVG-QNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHV 560

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            P +   G + L++ TE S  V G  NA   P++  R   +T+   +G  IVL GL++D+
Sbjct: 561 KPQITDGGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDN 620

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
            Q     +PLL  IP +G LFR+    R++T + +      ++PV + D S
Sbjct: 621 YQVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMV-----FLRPVIISDRS 666


>gi|91776764|ref|YP_546520.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91710751|gb|ABE50679.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 657

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 29/252 (11%)

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVSEGGDFS 246
           N   + +V L++ + EV R+ L+++G  +  S+T S+     +  ++  G ++       
Sbjct: 323 NDLADPEVMLEIEVMEVSRERLQELGIDYPTSLTASAGLSIDAMRSNNSGTYL------- 375

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
                  F+    L+  +    I  LA P +   +   A    G +    T  ++ G   
Sbjct: 376 -------FNSNPTLNFRKTTGDINILANPRIRVRNNDKAQVLVGDKVPVITTVATAGVGS 428

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRV--RKADTT 359
           + SV   D G+ L   P +     + ++I  EVS       +N G +  Y++  R A T 
Sbjct: 429 SQSVQYLDVGLKLEAEPRITLDDFVNIKIALEVSSLGSSTTLNGGGV-VYQIGTRNASTL 487

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T +LAGL+ D+ ++    +P L  IP+LG LF N   NR++TEI +A TP +V
Sbjct: 488 LRLKDGETQILAGLINDEERRNTSRLPGLGDIPLLGRLFSNQTDNRKKTEIVLAITPHVV 547

Query: 420 KPVAMRDLSRPD 431
                 ++SRP+
Sbjct: 548 N-----NISRPE 554


>gi|260888944|ref|ZP_05900207.1| hypothetical protein GCWU000323_00103 [Leptotrichia hofstadii
           F0254]
 gi|260861391|gb|EEX75891.1| putative general secretion pathway protein D [Leptotrichia
           hofstadii F0254]
          Length = 399

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 14/229 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGGKFVSEGGDFSVKGVL 251
           ++Q+ +K TI +   ++ +++G   SI  ++S  +K +  A F    VS    FS  G  
Sbjct: 166 KEQIIIKGTIIDTSSNLFERLGIDWSINSNNSNATKDNLVAKFLNGEVSIASIFSKGGRF 225

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVT 308
               F    + L+    IR  A PTL  +  +        + L    KT    T      
Sbjct: 226 LGIDF----NLLKENGDIRIEAMPTLMIMENEEGELKVTEEVLVGEKKTTKKDTEYVEPI 281

Query: 309 THDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELP 363
             + G+V    P +       +I L+I TE+S   +    NA      +  +  TT+ L 
Sbjct: 282 FSEAGIVFRINPEIRKINGIKKILLKIDTEISNFKLTSSYNASSGAKQK-NQTKTTITLN 340

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           +GG+  + GL +D  ++    +P+LSKIPI+G LF+  R NRE  +I+I
Sbjct: 341 NGGSTFIGGLKQDVSKETIRRVPVLSKIPIIGPLFKYRRTNREMRDIYI 389


>gi|302036706|ref|YP_003797028.1| putative type IV pili biogenesis protein PilQ [Candidatus
           Nitrospira defluvii]
 gi|300604770|emb|CBK41102.1| putative Type IV pili biogenesis protein PilQ [Candidatus
           Nitrospira defluvii]
          Length = 664

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 109/253 (43%), Gaps = 30/253 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVK- 248
           QV ++  I +      + +G Q  I      GSSSG S +F     G F ++  DF +  
Sbjct: 412 QVQIEARIVQADTTYTRSLGVQWGIQNVNQLGSSSGTS-AFKTGTTGAFGAQVSDFLINL 470

Query: 249 ----------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                           G  D    +  L A E     + +A P +T +  + A    G  
Sbjct: 471 PANPGLPSVPGAGFSIGKTDGAMLDVRLSAGELLGLTKVIAAPKITTLDKRDAKIAQGES 530

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS--PGRIGLRIQTEV--SEPVIGVNAGDM 348
             ++T  +S   T  T  D  + L+ TP + S  P  IG +I  +V  +   +G  +   
Sbjct: 531 IPFQT--TSLQGTQTTFVDANLELNVTPQITSRDPKEIGKQILMKVRATRNAVGARSNPA 588

Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            PS   R+A T V +  G T+V+ G+  D       GIP LS+IP+LG LF+N   N  +
Sbjct: 589 GPSIDRREATTQVLVRDGETMVIGGVFVDTQSNNVAGIPYLSRIPVLGWLFKNKTENVSK 648

Query: 408 TEIFIAATPFLVK 420
            E+ I  TP +V+
Sbjct: 649 QELLIFLTPTIVR 661


>gi|153002584|ref|YP_001368265.1| type IV pilus secretin PilQ [Shewanella baltica OS185]
 gi|160877305|ref|YP_001556621.1| type IV pilus secretin PilQ [Shewanella baltica OS195]
 gi|151367202|gb|ABS10202.1| type IV pilus secretin PilQ [Shewanella baltica OS185]
 gi|160862827|gb|ABX51361.1| type IV pilus secretin PilQ [Shewanella baltica OS195]
 gi|315269510|gb|ADT96363.1| type IV pilus secretin PilQ [Shewanella baltica OS678]
          Length = 683

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+      +A P +T  S Q A++   G  +    S+S+GA
Sbjct: 504 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 562

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSVT     + L  TP +    R+   L I  +     +    G   +   ++  T V +
Sbjct: 563 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 622

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ I  TP +V
Sbjct: 623 NNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 679


>gi|114561293|ref|YP_748806.1| general secretion pathway protein D [Shewanella frigidimarina NCIMB
           400]
 gi|114332586|gb|ABI69968.1| general secretion pathway protein D [Shewanella frigidimarina NCIMB
           400]
          Length = 710

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 22/182 (12%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD--- 311
           +F  ++ A+   T    LA P++T +  Q ASF  G +     V   TG+TS + +D   
Sbjct: 450 NFAALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDE-----VPIITGSTSSSNNDNPF 504

Query: 312 -------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
                   GV L   P +     + L I+ EVS   +  N G   S+  R+  TTV   S
Sbjct: 505 QTVERKEVGVKLKVVPQINEGSSVKLTIEQEVSG--VNGNTGVDISFSTRRLTTTVMADS 562

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  +VL GL+ +++Q+  + +P+L  IP +G LF++S   + +  + I      +KP  +
Sbjct: 563 GQIVVLGGLINEEVQESIQKVPILGDIPFIGHLFKSSSSKKTKKNLMI-----FIKPTII 617

Query: 425 RD 426
           RD
Sbjct: 618 RD 619


>gi|32477970|ref|NP_870964.1| general secretion pathway protein D (outD) [Rhodopirellula baltica
           SH 1]
 gi|32448527|emb|CAD78042.1| general secretion pathway protein D (outD) [Rhodopirellula baltica
           SH 1]
          Length = 822

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 12/198 (6%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           A  FG         F ++ + D F    +L AL+ +   + LA+P++TAI  + AS    
Sbjct: 404 AVTFGTLGSGGASSFGIRTLTDTFDTSVLLRALDSSDEAKLLADPSITAIDRREASIKIV 463

Query: 291 GQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
            Q      S + G+  V       D G++L  TP + +   I L++Q E S     V  G
Sbjct: 464 QQIPIVAASPAEGSNVVFAQVEFKDAGIILKVTPRISNDNTIELQVQPEYS-----VKVG 518

Query: 347 DM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           ++   P    R A+TTV + +G    L GL +  I +   G+P L  +  +G LFR+   
Sbjct: 519 EIENNPVIDSRTAETTVRVANGHMFTLGGLRQKRIIEGTSGVPYLRDLKYVGKLFRSHST 578

Query: 404 NREETEIFIAATPFLVKP 421
              E+E+ +   P ++ P
Sbjct: 579 EVRESELIVFLKPEIISP 596


>gi|114045976|ref|YP_736526.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-7]
 gi|113887418|gb|ABI41469.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-7]
          Length = 561

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 28/219 (12%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           T + +G S    A  GG         S+KG      F T++  L+    +  L+ P +TA
Sbjct: 328 TSAGAGLSDKITASLGGVT-----SLSIKG----SDFNTMISLLDTQGDVDVLSSPRVTA 378

Query: 280 ISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIG 329
            + Q A    G    + T  SST   G T VTT          G+ L  TP +   G + 
Sbjct: 379 SNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKDGNVL 438

Query: 330 LRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           L +   V        +  +   + ++P     +R++DT +   SG  +V+ GL+K +  +
Sbjct: 439 LHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENTE 498

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +   +PLL  IP++G LF+N    +++TE+ I   P +V
Sbjct: 499 VVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537


>gi|117619719|ref|YP_857681.1| type IV pilus secretin PilQ [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561126|gb|ABK38074.1| type IV pilus secretin PilQ [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 733

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 97/234 (41%), Gaps = 20/234 (8%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----------------FSV 247
           VR  + K  G  +S +G+  G   S   + G      G D                 F V
Sbjct: 497 VRWGVTKNDGHGNSTSGTIEGNDSSGNNNGGSTITRPGVDDRLNVNLPVTNAAGTLAFQV 556

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
             + D    +  L ALE+ +    +A P +T  + Q  +    G  +    SSS+GATSV
Sbjct: 557 ARLADGTLLDLELSALEKESKAEIIASPRVTT-ANQKPALIEQGTEIPYVESSSSGATSV 615

Query: 308 TTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           T     + L  TP +    R+   L +  +     +    GD  S   +   T V + +G
Sbjct: 616 TFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDAVSINAQSITTQVLVNNG 675

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T+VL G+ +  I+     +PLL  IP LG LFR +    ++ E+ I  TP +V
Sbjct: 676 ETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSENKKRELLIFVTPKIV 729


>gi|114330532|ref|YP_746754.1| type II and III secretion system protein [Nitrosomonas eutropha
           C91]
 gi|114307546|gb|ABI58789.1| type II and III secretion system protein [Nitrosomonas eutropha
           C91]
          Length = 767

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 9/160 (5%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRI 328
           LA P +   S + A    G +    TV+++     A S T  D G+     P V +   +
Sbjct: 416 LANPRIRVKSREKAKIHIGNKEPVFTVTNTANVGSAASATYIDVGLKFEVEPVVRTNNEV 475

Query: 329 GLRIQTEVSEPVI------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            L+   EVS  +       G NA        R A+T +EL  G T VLAGL++DD+ ++K
Sbjct: 476 TLKALLEVSSNLGEKRSGGGDNAATAIVIGTRTAETVLELRDGETQVLAGLIQDDLSRVK 535

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            GI  L++IPILG +F        +TEI +  TP +++ V
Sbjct: 536 SGIAGLTEIPILGDIFSKQVRKHNKTEIILLITPHIIRNV 575


>gi|327538204|gb|EGF24886.1| general secretion pathway protein D (outD) [Rhodopirellula baltica
           WH47]
          Length = 822

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 12/198 (6%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           A  FG         F ++ + D F    +L AL+ +   + LA+P++TAI  + AS    
Sbjct: 404 AVTFGTLGSGGASSFGIRTLTDTFDTSVLLRALDSSDEAKLLADPSITAIDRREASIKIV 463

Query: 291 GQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
            Q      S + G+  V       D G++L  TP + +   I L++Q E S     V  G
Sbjct: 464 QQIPIVAASPAEGSNVVFAQVEFKDAGIILKVTPRISNDNTIELQVQPEYS-----VKVG 518

Query: 347 DM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           ++   P    R A+TTV + +G    L GL +  I +   G+P L  +  +G LFR+   
Sbjct: 519 EIENNPVIDSRTAETTVRVANGHMFTLGGLRQKRIIEGTSGVPYLRDLKYVGKLFRSHST 578

Query: 404 NREETEIFIAATPFLVKP 421
              E+E+ +   P ++ P
Sbjct: 579 EVRESELIVFLKPEIISP 596


>gi|254357385|ref|ZP_04973659.1| general secretion pathway protein D [Burkholderia mallei
           2002721280]
 gi|148026449|gb|EDK84534.1| general secretion pathway protein D [Burkholderia mallei
           2002721280]
          Length = 750

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%)

Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322
           L+ P L  +  + A    G Q++      Y  ++S T A +  T+D    G+ LH  P +
Sbjct: 500 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 558

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
              G + L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ 
Sbjct: 559 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 618

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q     +PLL  IP +G LFR+    R++T + +      ++PV + D           +
Sbjct: 619 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 663

Query: 439 DAKAFFFNRVNKIYG 453
            A+A   NR + I G
Sbjct: 664 TAQAVTSNRYDYIQG 678


>gi|330886181|gb|EGH20082.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 428

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 32/256 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   + ++SG  K  ++  D  G               F
Sbjct: 175 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPF 234

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 235 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 294

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 295 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 348

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 349 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 408

Query: 409 EIFIAATPFLVKPVAM 424
           E+ +  TP ++   A+
Sbjct: 409 ELLVFLTPRIMNNQAI 424


>gi|53717646|ref|YP_106632.1| general secretory pathway protein D [Burkholderia pseudomallei
           K96243]
 gi|52208060|emb|CAH33990.1| general secretory pathway protein D [Burkholderia pseudomallei
           K96243]
          Length = 757

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%)

Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322
           L+ P L  +  + A    G Q++      Y  ++S T A +  T+D    G+ LH  P +
Sbjct: 507 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 565

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
              G + L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ 
Sbjct: 566 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 625

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q     +PLL  IP +G LFR+    R++T + +      ++PV + D           +
Sbjct: 626 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 670

Query: 439 DAKAFFFNRVNKIYG 453
            A+A   NR + I G
Sbjct: 671 TAQAVTSNRYDYIQG 685


>gi|126441466|ref|YP_001057062.1| general secretion pathway protein D [Burkholderia pseudomallei 668]
 gi|126220959|gb|ABN84465.1| general secretion pathway protein D [Burkholderia pseudomallei 668]
          Length = 757

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%)

Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322
           L+ P L  +  + A    G Q++      Y  ++S T A +  T+D    G+ LH  P +
Sbjct: 507 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 565

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
              G + L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ 
Sbjct: 566 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 625

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q     +PLL  IP +G LFR+    R++T + +      ++PV + D           +
Sbjct: 626 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 670

Query: 439 DAKAFFFNRVNKIYG 453
            A+A   NR + I G
Sbjct: 671 TAQAVTSNRYDYIQG 685


>gi|53723933|ref|YP_104304.1| general secretion pathway protein D [Burkholderia mallei ATCC
           23344]
 gi|121600876|ref|YP_994796.1| general secretion pathway protein D [Burkholderia mallei SAVP1]
 gi|124384347|ref|YP_001027865.1| general secretion pathway protein D [Burkholderia mallei NCTC
           10229]
 gi|126450814|ref|YP_001082187.1| general secretion pathway protein D [Burkholderia mallei NCTC
           10247]
 gi|238562298|ref|ZP_00440689.2| general secretion pathway protein D [Burkholderia mallei GB8 horse
           4]
 gi|52427356|gb|AAU47949.1| general secretion pathway protein D [Burkholderia mallei ATCC
           23344]
 gi|121229686|gb|ABM52204.1| general secretion pathway protein D [Burkholderia mallei SAVP1]
 gi|124292367|gb|ABN01636.1| general secretion pathway protein D [Burkholderia mallei NCTC
           10229]
 gi|126243684|gb|ABO06777.1| general secretion pathway protein D [Burkholderia mallei NCTC
           10247]
 gi|238522939|gb|EEP86381.1| general secretion pathway protein D [Burkholderia mallei GB8 horse
           4]
          Length = 757

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%)

Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322
           L+ P L  +  + A    G Q++      Y  ++S T A +  T+D    G+ LH  P +
Sbjct: 507 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 565

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
              G + L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ 
Sbjct: 566 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 625

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q     +PLL  IP +G LFR+    R++T + +      ++PV + D           +
Sbjct: 626 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 670

Query: 439 DAKAFFFNRVNKIYG 453
            A+A   NR + I G
Sbjct: 671 TAQAVTSNRYDYIQG 685


>gi|50083568|ref|YP_045078.1| putative general secretion pathway protein [Acinetobacter sp. ADP1]
 gi|49529544|emb|CAG67256.1| putative general secretion pathway protein [Acinetobacter sp. ADP1]
          Length = 772

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 110/259 (42%), Gaps = 34/259 (13%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------- 240
           +QV ++  I EV  D   Q+G Q ++   +SG      ++ G    S             
Sbjct: 394 EQVLIEAAIIEVSGDDSDQLGIQWALGDLNSGVGLLSFSNVGASLASIAAGYASTGTAGA 453

Query: 241 -----------EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                       G  F+V    + R ++  ++ AL+  T    L+ P++  +  + A   
Sbjct: 454 AAAIASGTNSGNGATFAVGDFSNSRKAYGALIQALKSNTKSNVLSTPSIVTMDNEEAYIV 513

Query: 289 SGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            G    + T S STG+T       +V   D GV L   P +   G + L ++ EVS+   
Sbjct: 514 VGQNVPFVTGSVSTGSTGTINPYTTVERKDVGVTLKVIPHIGENGTVRLEVEQEVSDVQS 573

Query: 342 GV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               A D+ + + R   T V    G T+VL GL+ D+    ++GIP LS IP LG LFR 
Sbjct: 574 SKGQATDLVTNK-RAIKTAVLAEHGQTVVLGGLISDNTSLTRQGIPGLSNIPYLGRLFRA 632

Query: 401 SRFNREETEIFIAATPFLV 419
              + E+  + +   P ++
Sbjct: 633 DSKSNEKRNLLVFIHPTII 651


>gi|157377488|ref|YP_001476088.1| general secretion pathway protein D [Shewanella sediminis HAW-EB3]
 gi|157319862|gb|ABV38960.1| general secretion pathway protein D [Shewanella sediminis HAW-EB3]
          Length = 724

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 16/178 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTH 310
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S+S+ +      +V   
Sbjct: 448 FGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSTSSSSNTNPFQTVERK 507

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTI 368
           + GV L   P +     + L I+ EVS    G+N   G   ++  R+  TTV   SG  +
Sbjct: 508 EVGVKLKVVPQINEGTSVKLTIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQIV 563

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           VL GL+K+++Q+  + +P L  +PI+G LF++S     +T + +      +KP  +RD
Sbjct: 564 VLGGLIKEEVQESVQKVPFLGDLPIIGHLFKSSSSGTRKTNLMV-----FIKPTIIRD 616


>gi|330810080|ref|YP_004354542.1| type II secretion pathway protein D precursor [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327378188|gb|AEA69538.1| putative type II secretion pathway protein D precursor [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 786

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 113/268 (42%), Gaps = 28/268 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++V++LL+     QV ++  I EV  D   + G Q   TG+  G       + GG  ++ 
Sbjct: 453 REVIDLLD-QRRAQVVIESLIVEVGEDDASEFGVQWQ-TGNLGGSGVIGGVNLGGTGLNL 510

Query: 242 GGDFSVK------------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
            G  S+                   G+      + +  AL+       L+ P L  +  +
Sbjct: 511 NGKTSIDVLPQGLNLGVVNGTVDIPGIGKILDLKVLARALKSKGGTNVLSTPNLLTLDNE 570

Query: 284 SAS--------FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +AS        F SG        +S+    +VT  + G+ L+  P +   G + L I  E
Sbjct: 571 AASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQE 630

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           VS      ++        R  DT++ L  G  +VL GLL+D   Q  + +P LS IP +G
Sbjct: 631 VSSVDNRASSTTGIVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSTIPGIG 690

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVA 423
           ALFRN R    +T + +   P++++  A
Sbjct: 691 ALFRNERRQITKTNLMVFLRPYIIRDTA 718


>gi|126454161|ref|YP_001064292.1| general secretion pathway protein D [Burkholderia pseudomallei
           1106a]
 gi|134281369|ref|ZP_01768077.1| general secretion pathway protein D [Burkholderia pseudomallei 305]
 gi|217423996|ref|ZP_03455496.1| general secretion pathway protein D [Burkholderia pseudomallei 576]
 gi|226193043|ref|ZP_03788653.1| general secretion pathway protein D [Burkholderia pseudomallei
           Pakistan 9]
 gi|237814399|ref|YP_002898850.1| general secretion pathway protein D [Burkholderia pseudomallei
           MSHR346]
 gi|254258553|ref|ZP_04949607.1| general secretion pathway protein D [Burkholderia pseudomallei
           1710a]
 gi|126227803|gb|ABN91343.1| general secretion pathway protein D [Burkholderia pseudomallei
           1106a]
 gi|134247036|gb|EBA47122.1| general secretion pathway protein D [Burkholderia pseudomallei 305]
 gi|163639391|gb|ABY28246.1| general secretion pathway protein D [Burkholderia pseudomallei]
 gi|217393059|gb|EEC33081.1| general secretion pathway protein D [Burkholderia pseudomallei 576]
 gi|225934643|gb|EEH30620.1| general secretion pathway protein D [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506672|gb|ACQ98990.1| general secretion pathway protein D [Burkholderia pseudomallei
           MSHR346]
 gi|254217242|gb|EET06626.1| general secretion pathway protein D [Burkholderia pseudomallei
           1710a]
          Length = 757

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%)

Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322
           L+ P L  +  + A    G Q++      Y  ++S T A +  T+D    G+ LH  P +
Sbjct: 507 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 565

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
              G + L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ 
Sbjct: 566 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 625

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q     +PLL  IP +G LFR+    R++T + +      ++PV + D           +
Sbjct: 626 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 670

Query: 439 DAKAFFFNRVNKIYG 453
            A+A   NR + I G
Sbjct: 671 TAQAVTSNRYDYIQG 685


>gi|4139236|gb|AAD05173.1| general secretory pathway protein D [Burkholderia pseudomallei
           1026b]
          Length = 750

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%)

Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322
           L+ P L  +  + A    G Q++      Y  ++S T A +  T+D    G+ LH  P +
Sbjct: 500 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 558

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
              G + L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ 
Sbjct: 559 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 618

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q     +PLL  IP +G LFR+    R++T + +      ++PV + D           +
Sbjct: 619 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 663

Query: 439 DAKAFFFNRVNKIYG 453
            A+A   NR + I G
Sbjct: 664 TAQAVTSNRYDYIQG 678


>gi|113971816|ref|YP_735609.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-4]
 gi|113886500|gb|ABI40552.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-4]
          Length = 561

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 28/219 (12%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           T + +G S    A  GG         S+KG      F T++  L+    +  L+ P +TA
Sbjct: 328 TSAGAGLSDKITASLGGVT-----SLSIKG----SDFNTMISLLDTQGDVDVLSSPRVTA 378

Query: 280 ISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIG 329
            + Q A    G    + T  SST   G T VTT          G+ L  TP +   G + 
Sbjct: 379 SNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKDGNVL 438

Query: 330 LRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           L +   V        +  +   + ++P     +R++DT +   SG  +V+ GL+K +  +
Sbjct: 439 LHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENTE 498

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +   +PLL  IP++G LF+N    +++TE+ I   P +V
Sbjct: 499 VVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537


>gi|39997126|ref|NP_953077.1| type IV pilus biogenesis protein PilQ [Geobacter sulfurreducens
           PCA]
 gi|39984016|gb|AAR35404.1| type IV pilus biogenesis protein PilQ [Geobacter sulfurreducens
           PCA]
 gi|298506139|gb|ADI84862.1| type IV pilus secretin lipoprotein PilQ [Geobacter sulfurreducens
           KN400]
          Length = 894

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 20/241 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGG-----------KFV 239
           E QV ++  I E      + +G Q  I  + SG    +S  A FGG              
Sbjct: 659 EKQVLIEARIVEATSTFTRDLGVQWGIHSNDSGADIIRSVDAGFGGIVTPPPASGFPAAT 718

Query: 240 SEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           S GG   +    +     +  L A   A  ++ ++ P +  ++ ++A  + G    Y+T 
Sbjct: 719 SSGGAVGISFAKMGSLQVDLRLSAAAVAGLVKIVSTPKVVTLNNKAAKISQGQSIPYQTT 778

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           S+    T     +  + L  TP + + G + ++I+   +        G  P    ++A T
Sbjct: 779 SAE--GTKTEFVEAALTLEVTPHITADGSVSMKIKASNNS----AGTGSPPPINKKEATT 832

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + + +G T V+ G+  D       G+P L  IP+LG LF+++  N+ +TE+ I  TP +
Sbjct: 833 ELLVKNGETTVIGGIYVDSDTDEDRGVPFLMDIPVLGWLFKSNTKNKTKTELLIFITPKI 892

Query: 419 V 419
           V
Sbjct: 893 V 893


>gi|76811977|ref|YP_331636.1| general secretion pathway protein D [Burkholderia pseudomallei
           1710b]
 gi|167822031|ref|ZP_02453502.1| general secretion pathway protein D [Burkholderia pseudomallei 9]
 gi|167900627|ref|ZP_02487832.1| general secretion pathway protein D [Burkholderia pseudomallei NCTC
           13177]
 gi|167921121|ref|ZP_02508212.1| general secretion pathway protein D [Burkholderia pseudomallei
           BCC215]
 gi|254194560|ref|ZP_04900991.1| general secretion pathway protein D [Burkholderia pseudomallei S13]
 gi|76581430|gb|ABA50905.1| general secretion pathway protein D [Burkholderia pseudomallei
           1710b]
 gi|169651310|gb|EDS84003.1| general secretion pathway protein D [Burkholderia pseudomallei S13]
          Length = 750

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%)

Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322
           L+ P L  +  + A    G Q++      Y  ++S T A +  T+D    G+ LH  P +
Sbjct: 500 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 558

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
              G + L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ 
Sbjct: 559 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 618

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q     +PLL  IP +G LFR+    R++T + +      ++PV + D           +
Sbjct: 619 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 663

Query: 439 DAKAFFFNRVNKIYG 453
            A+A   NR + I G
Sbjct: 664 TAQAVTSNRYDYIQG 678


>gi|224368244|ref|YP_002602407.1| GspD1 [Desulfobacterium autotrophicum HRM2]
 gi|223690960|gb|ACN14243.1| GspD1 [Desulfobacterium autotrophicum HRM2]
          Length = 653

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 23/223 (10%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET---VLHALERATAIRTLAEPT 276
           + ++ G    F+A   GK ++ GG           SF T   V+ A +       L+ P 
Sbjct: 416 SAAAGGLGSGFSAGIMGKSITIGG----------VSFPTLGAVIQAYQSDKDSHILSTPQ 465

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRI 328
           +     + A+ T G    Y+T SS    T++TT  Y        G+ L  TP +     +
Sbjct: 466 ILTTDNEEATLTIGKNVPYQTRSSVDNDTTLTTSSYNSYEYKDVGITLKITPQISKDRLV 525

Query: 329 GLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            L +  E+++       + D P+   RK +TT+ +  G T+V+ GL+ + +   +  +P 
Sbjct: 526 RLNVYQEITKLDSSASQSTDRPTTLKRKIETTLIVEDGNTVVIGGLIDETLSSSEYKVPC 585

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429
           L  IP L  LF+ +    E+T +++  TP +VK P+   +L +
Sbjct: 586 LGDIPGLSYLFKTTSTGDEKTNLYVFLTPRVVKNPLEASELYK 628


>gi|90407251|ref|ZP_01215438.1| type IV pilus biogenesis protein PilQ [Psychromonas sp. CNPT3]
 gi|90311674|gb|EAS39772.1| type IV pilus biogenesis protein PilQ [Psychromonas sp. CNPT3]
          Length = 739

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+      +A P +T    Q+A    G +  Y   S+S+GAT+V+     + L  T
Sbjct: 574 LSALEKENKAEIIASPRITTADQQTAYIEQGTEIPY-VESASSGATAVSFKKAVLSLQVT 632

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    +I   L I  +    VI    G   S   ++  T V + +G TIVL G+ +  
Sbjct: 633 PQITPDNKIILDLVITQDSKGDVIPTGLGQAVSINTQEIKTQVLVGNGETIVLGGIYQQR 692

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +P L  IP LGALFR +     ++E+ I  TP LV
Sbjct: 693 IIDTVQKVPFLGDIPFLGALFRTTIKENRKSELLIFVTPRLV 734


>gi|91791628|ref|YP_561279.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
 gi|91713630|gb|ABE53556.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
          Length = 683

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+      +A P +T  S Q A++   G  +    S+S+GA
Sbjct: 504 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 562

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSVT     + L  TP +    R+   L I  +     +    G   +   ++  T V +
Sbjct: 563 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 622

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G TIVL G+ + ++      +P+L  IP +G LFRN+    E  E+ I  TP +V
Sbjct: 623 DNGETIVLGGIYQQNLISRVSKVPILGDIPYVGFLFRNTTDKNERQELLIFVTPKIV 679


>gi|308271298|emb|CBX27906.1| hypothetical protein N47_G32300 [uncultured Desulfobacterium sp.]
          Length = 695

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 34/245 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---------AADFGGKFVSEGGDF 245
           QV ++ TIAE+      Q G +  I  +  G + +          A+     F+SE    
Sbjct: 444 QVLIEATIAELTLSDDLQYGLEWYINNTLQGGAYTLGTSGNLGLSASGLAFNFISESK-- 501

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            VKG++  F+          A     L+ P L  I  + A+   G      TV+S   +T
Sbjct: 502 KVKGLISAFAI---------AGKTNILSTPRLMVIDNKEATIQVGED--VPTVTSQVTST 550

Query: 306 -----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
                      SV   + GV+L   PT+ + G + L +  EVSE      AG  P   +R
Sbjct: 551 ESTITSTNLLQSVQYRNTGVILRVKPTINTEGLLTLELSQEVSETGEKGVAGS-PVILMR 609

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           K +TTV +  G T++L GL+K+     +  +P L  IPI+G LF+ +   + +TE+ I  
Sbjct: 610 KINTTVVIAQGQTLLLGGLMKEKNTTGESKVPGLGDIPIIGNLFKATSKTKNKTELIILV 669

Query: 415 TPFLV 419
           TP ++
Sbjct: 670 TPTII 674


>gi|171318827|ref|ZP_02907964.1| general secretion pathway protein D [Burkholderia ambifaria MEX-5]
 gi|171095968|gb|EDT40901.1| general secretion pathway protein D [Burkholderia ambifaria MEX-5]
          Length = 775

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336
           + GQ+    +G    Y  ++S T + +  T+D    G+ LH  P +   G + L++ TE 
Sbjct: 526 VVGQNVPIATGS---YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTED 582

Query: 337 SEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           S  V G  NA   P++  R   +T+   +G  IVL GL++D+ Q     +PLL  IP +G
Sbjct: 583 SAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 642

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
            LFR+    R++T + +      ++PV + D S
Sbjct: 643 QLFRSESKQRQKTNLMV-----FLRPVIISDRS 670


>gi|170699037|ref|ZP_02890094.1| general secretion pathway protein D [Burkholderia ambifaria
           IOP40-10]
 gi|170136073|gb|EDT04344.1| general secretion pathway protein D [Burkholderia ambifaria
           IOP40-10]
          Length = 770

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336
           + GQ+    +G    Y  ++S T + +  T+D    G+ LH  P +   G + L++ TE 
Sbjct: 522 VVGQNVPIATGS---YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTED 578

Query: 337 SEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           S  V G  NA   P++  R   +T+   +G  IVL GL++D+ Q     +PLL  IP +G
Sbjct: 579 SAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 638

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
            LFR+    R++T + +      ++PV + D S
Sbjct: 639 QLFRSESKQRQKTNLMV-----FLRPVIISDRS 666


>gi|83859119|ref|ZP_00952640.1| general secretion pathway protein D [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852566|gb|EAP90419.1| general secretion pathway protein D [Oceanicaulis alexandrii
           HTCC2633]
          Length = 661

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 11/190 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTT 309
           F  +++AL+  T    L++P L  +  + A+   G Q +  T   + G+ +      +  
Sbjct: 435 FGVIVNALDSDTDSNVLSKPQLMVLDNEEANLMVG-QEIPITTGETLGSNNSNPFRQIER 493

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--RVRKADTTVELPSGGT 367
              GV L+  P +     I L+I+ EVS  V G  + D        RK +TTV    G  
Sbjct: 494 ESVGVQLYVRPQINDGDAIRLQIRQEVSS-VAGPVSADFVELITNQRKIETTVLADDGEI 552

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRD 426
           IVL GL++ D Q+ + G+P LS+IP  G LFRN   +     + +   P +V+  A MRD
Sbjct: 553 IVLGGLIETDEQEAESGVPGLSRIPGAGRLFRNDSRSTTRRNLMVFIRPTIVRDAASMRD 612

Query: 427 LSRPDDHYSV 436
           ++R    Y+V
Sbjct: 613 VTRMSYDYAV 622


>gi|117922096|ref|YP_871288.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. ANA-3]
 gi|117614428|gb|ABK49882.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. ANA-3]
          Length = 561

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 28/219 (12%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           T + +G S    A  GG         S+KG      F T++  L+    +  L+ P +TA
Sbjct: 328 TSAGAGLSDKITASLGGVT-----SLSIKG----SDFNTMISLLDTQGDVDVLSSPRVTA 378

Query: 280 ISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIG 329
            + Q A    G    + T  SST   G T VTT          G+ L  TP +   G + 
Sbjct: 379 SNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKDGNVL 438

Query: 330 LRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           L +   V        +  +   + ++P     +R++DT +   SG  +V+ GL+K +  +
Sbjct: 439 LHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENTE 498

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +   +PLL  IP++G LF+N    +++TE+ I   P +V
Sbjct: 499 VVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537


>gi|115350108|ref|YP_771947.1| general secretion pathway protein D [Burkholderia ambifaria AMMD]
 gi|115280096|gb|ABI85613.1| general secretion pathway protein D [Burkholderia ambifaria AMMD]
          Length = 777

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 28/232 (12%)

Query: 214 GFQHSITGSSSGPSKS---FAADFGGKFVSEGGD-------FSVKGV---LDRFSFETVL 260
           G  +SI   +SG + +    AA+  G  +S+G +       F V+G+   L  F+  +  
Sbjct: 453 GLGNSIVNLTSGGTAATTGLAANLAG--LSQGLNIGWLHNMFGVQGLGALLQYFAGVSDA 510

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLH 317
           + L     I TL       + GQ+    +G    Y  ++S T + +  T+D    G+ LH
Sbjct: 511 NVLSTPNLI-TLDNEEAKIVVGQNVPIATGS---YSNLTSGTTSNAFNTYDRRDVGLTLH 566

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G + L++ TE S  V G  NA   P++  R   +T+   +G  IVL GL++D
Sbjct: 567 VKPQITDGGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQD 626

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           + Q     +PLL  IP +G LFR+    R++T + +      ++PV + D S
Sbjct: 627 NYQVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMV-----FLRPVIISDRS 673


>gi|330989446|gb|EGH87549.1| general secretion pathway protein D [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 778

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 8/186 (4%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G  ++ G+ +    + +  AL+       L+ P L  +  ++AS   G    + T S  T
Sbjct: 526 GAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVT 585

Query: 303 GA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           G          +V   + G+ L+  P +   G + L I  EVS      +         R
Sbjct: 586 GGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKR 645

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             DT++ L  G  +VL GLL+D   Q  E +P LS+IP+LG LFRN   +  +T + +  
Sbjct: 646 AIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFL 705

Query: 415 TPFLVK 420
            P++++
Sbjct: 706 RPYIIR 711


>gi|330828668|ref|YP_004391620.1| type IV pilus secretin PilQ [Aeromonas veronii B565]
 gi|328803804|gb|AEB49003.1| Type IV pilus secretin PilQ [Aeromonas veronii B565]
          Length = 741

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+ +    +A P +T  + Q  +    G  +    SSS+GA
Sbjct: 562 FQVARLADGTLLDLELSALEKESKAEIIASPRVTT-ANQKPALIEQGTEIPYVESSSSGA 620

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSVT     + L  TP +    R+   L +  +     +    GD  S   +   T V +
Sbjct: 621 TSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDAVSINAQSITTQVLV 680

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G T+VL G+ +  I+     +PLL  IP LGALFR +    ++ E+ I  TP +V
Sbjct: 681 NNGETLVLGGIYQQTIKSDVTKVPLLGDIPGLGALFRKTTSENKKRELLIFVTPKIV 737


>gi|229591502|ref|YP_002873621.1| general secretion pathway protein D [Pseudomonas fluorescens SBW25]
 gi|229363368|emb|CAY50509.1| general secretion pathway protein D [Pseudomonas fluorescens SBW25]
          Length = 740

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSSTGATSVTT 309
           + +  LHALE     + L+ P+L  ++ Q A    G      Q    T +S T  +SV  
Sbjct: 543 NLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTSDTTLSSVEY 602

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSG 365
              GV+L   P +   G + + IQ +VS+     ++ +     P    R   T V + SG
Sbjct: 603 VQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASSSNDTQNNPRISTRSVSTQVAVQSG 662

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF N+  +++ TE+ +  TP ++
Sbjct: 663 QTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVI 716


>gi|84390819|ref|ZP_00991511.1| fimbrial assembly protein [Vibrio splendidus 12B01]
 gi|84376622|gb|EAP93499.1| fimbrial assembly protein [Vibrio splendidus 12B01]
          Length = 564

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GATSV      + L  T
Sbjct: 402 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVT 460

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 461 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 520

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +    + +PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 521 VSSTVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPKVV 562


>gi|78223066|ref|YP_384813.1| type II and III secretion system protein [Geobacter metallireducens
           GS-15]
 gi|78194321|gb|ABB32088.1| type II and III secretion system protein [Geobacter metallireducens
           GS-15]
          Length = 861

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 170/392 (43%), Gaps = 61/392 (15%)

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHD--GKQMLNLDILIERDIAHLEMTLRRFIADSN 135
           D +     T+YL   N  QA  +L   +  GK++LN            E T+  F   + 
Sbjct: 212 DTIKDQKVTIYLENANFQQALDLLTNMNKLGKKVLN------------ESTILIF-PKTP 258

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM-----NLLNI 190
            + +   D VV    + T+ D+++AV L  T L    R  Y N     ++      L+++
Sbjct: 259 EKSKQYEDLVVKTFFLNTL-DAKKAVNLLRTMLQV--RKVYVNEELNAIVVRDTSELVDV 315

Query: 191 AG---------EDQVTLKVTIAEVRRDILKQIGF---QHSITGSSSGPSKSFAAD-FGGK 237
           AG         + +V L V + EV +  ++  G    +++++ ++  P   F  D F   
Sbjct: 316 AGKILEANDVPDAEVLLDVEVIEVSKRNIENFGLALSKYAVSLNTQTPGGGFLNDTFSRA 375

Query: 238 FVSEGGDFSVKG-----VLDRFS------FETVLHAL----ERATAIRTLAEPTLTAISG 282
            VS     +++G     +L  FS      F TV  A     +  T    LA P +   + 
Sbjct: 376 SVSSSTGTTIQGTAGSELLQTFSWNGYSGFMTVPSASYSFGKSITNAEVLANPKIRVKNR 435

Query: 283 QSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           + + FT G +        T ++   + +V   D GV L+  PT++    + +++  EVS 
Sbjct: 436 EKSKFTVGTRVPITTTSTTGTTGGFSVNVQYVDVGVKLNAEPTIMLNNEVSIKLGLEVSS 495

Query: 339 PVIGVNAGDMPSYRV------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            +     G   S         R  DT + L  G T V+ GL++D+ Q+ K+ I LL  IP
Sbjct: 496 IIDKQTVGGTDSATTVVTIGTRNLDTVLNLKDGETSVIGGLIEDNKQKGKQKIFLLGDIP 555

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           I+G L  N+  + ++ E+ +A TP LV+ V +
Sbjct: 556 IIGPLLSNNSNDNQKRELILAITPRLVRSVTV 587


>gi|56478233|ref|YP_159822.1| general secretory pathway protein D [Aromatoleum aromaticum EbN1]
 gi|56314276|emb|CAI08921.1| general secretory pathway protein D [Aromatoleum aromaticum EbN1]
          Length = 719

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 117/282 (41%), Gaps = 45/282 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSF--AADFGGK------------FV 239
           QV ++  IAE+  +   + G Q  S     +G S +F    +FGG              V
Sbjct: 381 QVYIEALIAEISTERAAEFGIQWQSANTPGAGSSSTFFGGTNFGGAGQNIIGAAQNIGSV 440

Query: 240 SEGGDFSVKG----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            +G +F + G          +++ F+   +   LE  +    L+ P+L  +  + A    
Sbjct: 441 GKGMNFLLGGGTVKVPINGQMVEVFNLSLLARFLETDSRTNILSTPSLVTLDNEGAKIVV 500

Query: 290 G-------GQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           G       GQ+   T   +T A    T    D G+ L   P +   G I L I  E S  
Sbjct: 501 GRNLPFITGQY-TNTGGGTTPANPFQTIERRDVGLTLEVRPQISEGGAIRLDIYQEASSV 559

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           V  ++    P+   R   +TV +  G  I L GL++DD    +E +PLL  IP  G+LFR
Sbjct: 560 VPTLDDSAGPTTNKRSIQSTVLVDDGAIIALGGLVEDDYSSGEEKVPLLGDIPFAGSLFR 619

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
                R +T + +      ++PV +RD     D YS   +A+
Sbjct: 620 YDTRRRTKTNLVV-----FLRPVILRD----RDSYSTITNAR 652


>gi|171319027|ref|ZP_02908154.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
 gi|171095782|gb|EDT40735.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
          Length = 633

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 12/234 (5%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFGG--KFVSEGGDFSVK 248
           V ++  I +V+   LK+IGF  ++ GS     S+        D G   +    G +FS+ 
Sbjct: 330 VQIEAAIIDVQDGALKEIGFDWALQGSQFRIASTTSGAGIGRDLGNADRVRGNGPNFSIF 389

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G     SF + +HAL+       L+ P L  ++G  A  T+  Q ++    S+     + 
Sbjct: 390 GGSSALSFLSRIHALQTEGKASVLSRPKLATLNGIEAVLTN--QQVFYPRVSNERVAQLY 447

Query: 309 THDYGVVLHFTPTVL--SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL-PSG 365
             D G+ +   P V+  S G+  +R+Q  + +  +G    D      + A TT  L  +G
Sbjct: 448 QVDVGLQMRVVPAVVRRSDGKADIRLQVFIEDGSLGSQRVDGLPVTSKSAITTQALVRNG 507

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            ++++ G ++D   + +  +PLL  IP+LGALFR      +  E     TP L+
Sbjct: 508 ESLLIGGYVRDVNDRGEAKVPLLGDIPLLGALFRFRSTQTDRQERLFLITPKLL 561


>gi|238783115|ref|ZP_04627141.1| Protein transporter HofQ [Yersinia bercovieri ATCC 43970]
 gi|238715911|gb|EEQ07897.1| Protein transporter HofQ [Yersinia bercovieri ATCC 43970]
          Length = 405

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 2/150 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L A   Q+AS   G    Y       GA S+   +  + +  TP +L  G+I L 
Sbjct: 254 IASPRLVASHLQTASIKQGSDIPYAVARGDKGAVSIEFKEAVLGMEVTPKILRNGKITLN 313

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P + +  GD  +  + K +  T + +  G TIVL G+ +    Q    +P+L+
Sbjct: 314 LKISQNMPGMTIKRGDTEALLIDKQEIKTQITVNDGETIVLGGIFQQKNNQAVNKVPILA 373

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP LGALF+     +   E+ I  TP L+
Sbjct: 374 DIPWLGALFKQDTKQQSRRELVIFITPRLI 403


>gi|157960066|ref|YP_001500100.1| type IV pilus secretin PilQ [Shewanella pealeana ATCC 700345]
 gi|157845066|gb|ABV85565.1| type IV pilus secretin PilQ [Shewanella pealeana ATCC 700345]
          Length = 688

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 102/248 (41%), Gaps = 24/248 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSF--AADFGGKFVSEGGD------ 244
           QV ++  +  V+ D+ + +G +  +T      G S S   A D     V    D      
Sbjct: 438 QVLIEARMVTVKDDVSEDLGVRWGVTDQQGDKGTSGSLEGAGDIANGIVPSLSDRLNVNL 497

Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                      F V  + D    +  L ALE+      +A P +T  S Q A+F   G  
Sbjct: 498 PAAVANPTSIAFHVAKLADGTVLDLELSALEQENKGEIIASPRITT-SNQKAAFIEQGVE 556

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSY 351
           +    +SS+GAT+VT     + L  TP +    R+   L I  +     +    G   S 
Sbjct: 557 IPYVEASSSGATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGQAVSI 616

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++  T V +  G TIVL G+ +  +      +P+L  IP LG +FR++    E  E+ 
Sbjct: 617 DTQRIGTQVLVDHGETIVLGGIYQQQLISRVSKVPILGDIPYLGFMFRSTSDKNERQELL 676

Query: 412 IAATPFLV 419
           I  TP +V
Sbjct: 677 IFVTPKIV 684


>gi|154174515|ref|YP_001408333.1| type II and III secretion system protein [Campylobacter curvus
           525.92]
 gi|153793105|gb|EAU00522.2| type II and III secretion system protein [Campylobacter curvus
           525.92]
          Length = 506

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 112/243 (46%), Gaps = 28/243 (11%)

Query: 212 QIGFQHSITGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
           ++GF   + G  + PS +   + G G     G   ++   L+ FS + +++ LE     +
Sbjct: 257 ELGFNSYLGGDPTKPSNAGWNNRGNGLSAGFGQTLNIAANLN-FSLDGMMNFLETNGKAK 315

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV------TTHDY----GVVLHFTP 320
            ++ P +T ++ Q A  + G    Y+ +  +  A ++      T   Y    G++L+  P
Sbjct: 316 VISSPKVTTLNNQQALISVGDNINYRVMEQTDSANALNDRVKTTYKQYSVFIGILLNLLP 375

Query: 321 TVLSPGRIGLRIQTEVS------EPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLA 371
            V    +I LRI   +S      + V   N       P    +K  T V++ SG TIVL 
Sbjct: 376 EVSDNNKIMLRINPSLSSFKYQEDDVRAQNTNIREIAPDTIQKKLSTVVQVNSGDTIVLG 435

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-----KPV--AM 424
           GL+     +    +P+L+ IP+LG  F++++   + TE+    TP +V     KPV  ++
Sbjct: 436 GLIGQTKNKQNTAVPILADIPLLGNAFKSTKDAVKTTELIFVITPRVVDLDGAKPVQQSL 495

Query: 425 RDL 427
           +DL
Sbjct: 496 KDL 498


>gi|330502644|ref|YP_004379513.1| general secretion pathway protein D [Pseudomonas mendocina NK-01]
 gi|328916930|gb|AEB57761.1| general secretion pathway protein D [Pseudomonas mendocina NK-01]
          Length = 647

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 15/151 (9%)

Query: 282 GQSASFTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
           GQ+  F +G    Y T +S  G   T++   D GV L  TP +     + L I+ E+S  
Sbjct: 455 GQNVPFQTGS---YTTDASGAGNPFTTIERKDIGVTLKVTPHINEGATLRLEIEQEISSI 511

Query: 339 -PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            P  G+NA   D+ + + R   +T+    G  IVL GL++DD+ Q    +PLL  IP+LG
Sbjct: 512 APSTGLNAQAVDLVTNK-RSIKSTILADDGQVIVLGGLIQDDVTQATSKVPLLGDIPLLG 570

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            LFR++R +  +  + +      ++P  +RD
Sbjct: 571 GLFRSTRDSHIKRNLMV-----FLRPTVVRD 596


>gi|86147328|ref|ZP_01065642.1| fimbrial assembly protein [Vibrio sp. MED222]
 gi|85834893|gb|EAQ53037.1| fimbrial assembly protein [Vibrio sp. MED222]
          Length = 564

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GATSV      + L  T
Sbjct: 402 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVT 460

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 461 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 520

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +    + +PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 521 VSSQVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPKVV 562


>gi|158520346|ref|YP_001528216.1| type IV pilus secretin PilQ [Desulfococcus oleovorans Hxd3]
 gi|158509172|gb|ABW66139.1| type IV pilus secretin PilQ [Desulfococcus oleovorans Hxd3]
          Length = 987

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 124/290 (42%), Gaps = 40/290 (13%)

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLN---------IAGEDQVT----LKVTIAEVRRDILK 211
           E  LS  G  +  N +++ +M  +          IA  D+VT    +K  I E      +
Sbjct: 702 EGLLSDRGHAKVDNRTNQVIMTDVEEKVEKAREIIAKIDKVTPQVMIKARIVETSSSFSR 761

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSE-GGDFSVKGVLDR----------------- 253
           + G +  I    + P+ +   D  G +  E GG ++    L+                  
Sbjct: 762 EFGTEWGIDNRYNSPNINIGTD--GAYRDEMGGTYTYDVALNSLSSPVQNLIGINFARII 819

Query: 254 ---FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
              FS +  L  +E    ++ ++ P +  +  ++A+ + G  + Y  V          T 
Sbjct: 820 GTPFSLDAKLSLMESTGDVKIISTPKVVTLDNKTATISQGIDYPYTVVEDGEADVKWKTI 879

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           D    L  TP V    RI +++  + ++  +G       S+  ++A T + +  G T+V+
Sbjct: 880 DLN--LDVTPHVTPDDRISMKLNIQKND--VGEIINGEQSFNTKRASTELLVNDGDTVVI 935

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            G++K+     + G+P +SKIP+LG LF+    + E++E+ I  TP +V+
Sbjct: 936 GGIIKEREGAGERGVPWISKIPVLGNLFKYKTRSDEKSELLIFITPNVVR 985


>gi|283781428|ref|YP_003372183.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
 gi|283439881|gb|ADB18323.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
          Length = 1314

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 16/181 (8%)

Query: 255  SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTT-H 310
            S   ++ AL+++  ++ ++ P +  +  Q A F   G  + +  SS     G  + T   
Sbjct: 906  SVSVLVRALQQSRRLQVISRPQVQTLDNQPA-FVQVGARVPRITSSQLTVNGTINNTVLE 964

Query: 311  DYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDM---PSYRVRKADTT 359
            + G++L  TP     G I + I  E SE        P+   + GD+   P  R+  A TT
Sbjct: 965  NVGIILGVTPRTAPDGMIVMEIDAEKSELGPEAEGIPISINSNGDVIRSPQIRIATAQTT 1024

Query: 360  VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            V   SG T+++ GL+  + Q+    +P L  IP+LG LFR    + E  E+ I  TPF++
Sbjct: 1025 VSARSGQTVIIGGLITKNQQESTRRVPYLGDIPVLGRLFRFDSVSDERRELLIILTPFIM 1084

Query: 420  K 420
            +
Sbjct: 1085 Q 1085


>gi|218710790|ref|YP_002418411.1| type IV pilus assembly protein PilQ [Vibrio splendidus LGP32]
 gi|218323809|emb|CAV20166.1| type IV pilus assembly protein PilQ [Vibrio splendidus LGP32]
          Length = 572

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GATSV      + L  T
Sbjct: 410 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVT 468

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 469 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 528

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +    + +PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 529 VSSQVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPKVV 570


>gi|167947465|ref|ZP_02534539.1| general secretion pathway protein D [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 241

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 33/240 (13%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVLDRF-- 254
           ++  IAEV  D  K +G Q  + GS SG +      + G   +S+    +  GVL     
Sbjct: 3   VEAIIAEVSFDKTKDLGVQWIVDGSPSGNTAPVGIINLGTPKISDIAGAAAAGVLPSIPS 62

Query: 255 -----------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                             F  ++ ALE  ++   L+ P++  +  Q A         + T
Sbjct: 63  GTLIGLGKFFXPPGSGVDFAMLIRALESDSSSNILSTPSILTLDNQEAEIVVAKNVPFLT 122

Query: 298 VS-SSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG 346
              +STGA+S + +        D G+ L  TP +     I L I+ EVS  +P       
Sbjct: 123 GQYASTGASSTSVNPFQTIQRQDVGLTLRVTPQINEGNAIQLSIEQEVSSIDPTTSAGTT 182

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+ + + R   T V +    TIVL GL+ + +QQ+ E +PLL  IP +G LFR +R N++
Sbjct: 183 DIVTNK-RTIKTVVMVEDSHTIVLGGLIDEQLQQVDERVPLLGDIPGVGVLFR-ARNNQQ 240


>gi|121997138|ref|YP_001001925.1| pilus (MSHA type) biogenesis protein MshL [Halorhodospira halophila
           SL1]
 gi|121588543|gb|ABM61123.1| pilus (MSHA type) biogenesis protein MshL [Halorhodospira halophila
           SL1]
          Length = 538

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 26/190 (13%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----------VSSSTGAT 305
           FE  L ALE+   ++ L+ P ++ ++ Q A   +G    Y+T          V   T   
Sbjct: 326 FEGFLRALEQQGDVQVLSTPQVSTLNNQKAVIKAGTDSFYQTDFSINYRTVEVGGQTTTQ 385

Query: 306 SVTTHDY-----GVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGD------MP 349
                D+     G+ L  TP +   G I L +Q  V+E       +    GD      + 
Sbjct: 386 PELDPDFEPFFSGIALDVTPQIEESGWINLHVQPSVTEVRERERTLRTGRGDDEVRFSLA 445

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              VR++D+ V   SG  IV+ GL+++  QQ    +PLL ++P+LG LF   R    + E
Sbjct: 446 ESDVRQSDSIVRARSGEMIVIGGLIEEREQQETSRVPLLGRVPLLGWLFTQERQESSKYE 505

Query: 410 IFIAATPFLV 419
           + I   P +V
Sbjct: 506 LVILLRPRVV 515


>gi|87309468|ref|ZP_01091603.1| Type IV pilin multimeric outer membrane protein [Blastopirellula
           marina DSM 3645]
 gi|87287776|gb|EAQ79675.1| Type IV pilin multimeric outer membrane protein [Blastopirellula
           marina DSM 3645]
          Length = 719

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 4/174 (2%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--KTVSSSTGATS 306
           G LD  S    + ALE       +A P L  ++ Q A    G Q  Y   TV+ +    S
Sbjct: 396 GFLDS-SLGVFIDALESFGDTSVIASPQLLVLNKQRAEILIGEQKGYISTTVTETASTQS 454

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSG 365
           V   + G  L   P +   G + L +  E+S+  + V     +P+  V +  T V  P G
Sbjct: 455 VEFLEIGTQLRLRPFITDDGMVRLEVHPEISDGDVKVEGQFTLPNKIVTQVTTNVICPDG 514

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            TI++ GL+K D+++    IP L  IPILG  FR  +      E+ +  TP +V
Sbjct: 515 RTIIIGGLIKSDLRKKGSQIPYLGSIPILGPAFRQKQETTVRDELIVLLTPRIV 568


>gi|312961914|ref|ZP_07776411.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
 gi|311283724|gb|EFQ62308.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
          Length = 740

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSSTGATSVTT 309
           + +  LHALE     + L+ P+L  ++ Q A    G      Q    T +S T  +SV  
Sbjct: 542 NLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTSDTTLSSVEY 601

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPS---YRVRKADTTVELPSG 365
              GV+L   P +   G + + IQ +VS+     +  GD P+      R   T V + SG
Sbjct: 602 VQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASTNGDTPANPRISTRSVSTQVAVQSG 661

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D       +P L KIP L  LF ++  +++ TE+ +  TP ++
Sbjct: 662 QTVLLGGLIKQDNADTVSAVPYLGKIPGLRWLFGSTSKSKDRTELIVLITPRVI 715


>gi|325275690|ref|ZP_08141579.1| general secretion pathway protein D [Pseudomonas sp. TJI-51]
 gi|324099176|gb|EGB97133.1| general secretion pathway protein D [Pseudomonas sp. TJI-51]
          Length = 613

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 122/274 (44%), Gaps = 24/274 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------ADFGGKFVSEGGDFSVK 248
           QV +   I EV   I + +G Q  +         +F+      AD  GK     G  ++ 
Sbjct: 333 QVLIHAAIVEVSGSIDEALGVQWGVGTGGLNGGVTFSESGTGLADLLGKEAKLPGGAALA 392

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---VSSSTGA- 304
              DRF+   ++ AL  ++    L+ P+L  +  Q A    G    +KT   V+  +G+ 
Sbjct: 393 IGTDRFA--ALISALASSSRSNLLSTPSLLTLDNQEAHILVGQNVAFKTGSYVTPGSGSE 450

Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
              T+V   D G+ L   P +     + L ++ E SE        D+ + + R   +T+ 
Sbjct: 451 NPFTTVERKDIGISLKVRPHINEGQSLRLEVEQESSEIAPSTAENDLITNK-RTLKSTIL 509

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              G  IV+ GL+KD ++Q++ G+PLLS+IP LG LFR     +E+T + +   P +++ 
Sbjct: 510 ASDGEIIVIGGLIKDSMRQVERGVPLLSRIPWLGGLFRWRSDIQEKTNLMVFLRPTILRS 569

Query: 422 VAMR--------DLSRPDDHYSVEDDAKAFFFNR 447
            A R        D  R  D   +  DA+  F  R
Sbjct: 570 QAERVEVGRRAYDGVRAADDSPLPADAQRLFEPR 603


>gi|34979599|gb|AAQ83844.1| type IV pilus biogenesis secretin PilQ precursor [Legionella
           pneumophila 130b]
 gi|307609724|emb|CBW99235.1| type IV pilus [Legionella pneumophila 130b]
          Length = 698

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 2/168 (1%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D    +  L ALE       ++ P L   + Q+A   SG +  Y+  +SS GAT+V    
Sbjct: 515 DNILLDLELSALESEGRAELISSPRLITTNQQAAVIESGEEIPYQEATSS-GATAVAFKK 573

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
             + L  TP +   G+I + +Q     P      G +P+   ++  T V + +G TIVL 
Sbjct: 574 AVLSLKVTPQITPDGKILMDLQINQDTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLG 632

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+ K D  ++   IP   ++P++G LF N +   +  E+ I  TP ++
Sbjct: 633 GIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680


>gi|54296952|ref|YP_123321.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
           str. Paris]
 gi|53750737|emb|CAH12144.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
           str. Paris]
          Length = 698

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 2/168 (1%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D    +  L ALE       ++ P L   + Q+A   SG +  Y+  +SS GAT+V    
Sbjct: 515 DNILLDLELSALESEGRAELISSPRLITTNQQAAVIESGEEIPYQEATSS-GATAVAFKK 573

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
             + L  TP +   G+I + +Q     P      G +P+   ++  T V + +G TIVL 
Sbjct: 574 AVLSLKVTPQITPDGKILMDLQINQDTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLG 632

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+ K D  ++   IP   ++P++G LF N +   +  E+ I  TP ++
Sbjct: 633 GIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680


>gi|74317457|ref|YP_315197.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
           25259]
 gi|74056952|gb|AAZ97392.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
           25259]
          Length = 656

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 175/400 (43%), Gaps = 54/400 (13%)

Query: 53  GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL 112
           GLN V    V +D +  L +  T  D  V          K V  AN +LI  D  Q    
Sbjct: 204 GLNFVFDKDVRLDTKATLFARNTPIDEAVDMLLMTGQLSKKVVNANTLLIYPDQPQ---- 259

Query: 113 DILIERDIAHLEMTLRRFI---ADSNIRVEMVSDTVV---LHGMVR----TIQDSQRAVE 162
                +  A+ E+ ++ F    AD+   + M+   V    LH   R     ++D+  A+ 
Sbjct: 260 -----KQKAYQELMVKSFYLGNADAKATMAMLRTLVKAKDLHVDERLNLLVMRDTPDAIR 314

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
           L+E  ++              V +L     E +V L+V + EV+R  L  +G Q+    S
Sbjct: 315 LAERIVA--------------VQDL----AEPEVMLEVEVLEVKRGRLLDLGIQYPTNFS 356

Query: 223 --SSGPSKSFAADFGGKFVSEGGDFSVKGV--LDRFSFETV-------LHALERATAIRT 271
             +  P+ S     GG   +     SV  V  L   +   +       +   ++ + +  
Sbjct: 357 LLNLPPATSSTIGPGGVVTNTTPPPSVLTVESLKNITASQIAISPTPGVDLRKQDSDVNI 416

Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328
           LA P +   + + A    G +  +  + ++STG  + SV+  D G+ L   P+VL    +
Sbjct: 417 LANPRIRVKNREKAKIHIGDKVPVITSNTTSTGVVSESVSYLDVGLKLDVEPSVLMREDV 476

Query: 329 GLRIQTEVSEPVIGVNAGD-MPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            +R+  EVS  V  + +G+   +Y++  R A TT+ L  G T VLAGL+ D+ +     I
Sbjct: 477 QIRVGLEVSNIVREIRSGNGTLTYQIGTRNAGTTLRLKDGETQVLAGLISDEDRSTASRI 536

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           P L  +P++G LF + R  R +TEI +  TP +++  A R
Sbjct: 537 PGLGDLPLIGRLFSSQRDERNKTEIVLLITPRVLRSDATR 576


>gi|319761508|ref|YP_004125445.1| general secretion pathway protein d [Alicycliphilus denitrificans
           BC]
 gi|330823377|ref|YP_004386680.1| general secretion pathway protein D [Alicycliphilus denitrificans
           K601]
 gi|317116069|gb|ADU98557.1| general secretion pathway protein D [Alicycliphilus denitrificans
           BC]
 gi|329308749|gb|AEB83164.1| general secretion pathway protein D [Alicycliphilus denitrificans
           K601]
          Length = 777

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 16/187 (8%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGA------- 304
           ++    + + LE       L+ P L  +  + A    G    + T S ++TG        
Sbjct: 517 KYYLGALANFLENTGDANVLSTPNLLTLDNEEAQIIIGNNVPFPTGSYANTGGNGGAVNP 576

Query: 305 -TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTT 359
            T+V   D G++L   PT+   G + L +  EVS+     +  VN    PS   R  ++T
Sbjct: 577 FTTVERKDVGLMLRVRPTINENGTVKLTLYQEVSKVNESTLTNVNG---PSTSKRSIEST 633

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V +  G  IVL GLL+D     ++ +P++  +P+LGALFRN   +R++T + +   P ++
Sbjct: 634 VLVDDGSVIVLGGLLEDSYSLNQDKVPVMGDLPVLGALFRNENRSRKKTNLMVFLRPMVI 693

Query: 420 KPVAMRD 426
           +  A  D
Sbjct: 694 RDNATSD 700


>gi|52841166|ref|YP_094965.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628277|gb|AAU27018.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 698

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 2/168 (1%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D    +  L ALE       ++ P L   + Q+A   SG +  Y+  +SS GAT+V    
Sbjct: 515 DNILLDLELSALESEGRAELISSPRLITTNQQAAVIESGEEIPYQEATSS-GATAVAFKK 573

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
             + L  TP +   G+I + +Q     P      G +P+   ++  T V + +G TIVL 
Sbjct: 574 AVLSLKVTPQITPDGKILMDLQINQDTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLG 632

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+ K D  ++   IP   ++P++G LF N +   +  E+ I  TP ++
Sbjct: 633 GIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680


>gi|54293906|ref|YP_126321.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
           str. Lens]
 gi|53753738|emb|CAH15196.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
           str. Lens]
          Length = 698

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 2/168 (1%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D    +  L ALE       ++ P L   + Q+A   SG +  Y+  +SS GAT+V    
Sbjct: 515 DNILLDLELSALESEGRAELISSPRLITTNQQAAVIESGEEIPYQEATSS-GATAVAFKK 573

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
             + L  TP +   G+I + +Q     P      G +P+   ++  T V + +G TIVL 
Sbjct: 574 AVLSLKVTPQITPDGKILMDLQINQDTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLG 632

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+ K D  ++   IP   ++P++G LF N +   +  E+ I  TP ++
Sbjct: 633 GIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680


>gi|238797288|ref|ZP_04640789.1| Protein transporter HofQ [Yersinia mollaretii ATCC 43969]
 gi|238718925|gb|EEQ10740.1| Protein transporter HofQ [Yersinia mollaretii ATCC 43969]
          Length = 406

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 6/152 (3%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L A   Q+AS   G    Y       GA S+   +  + +  TP +L  G+I L 
Sbjct: 255 IASPRLVASHQQTASIKQGSDIPYTVSRGEKGAASIEFKEAVLGMEVTPKILRNGKITLN 314

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P + +  GD  +  + K +  T + +  G TIVL G+ +    Q    +P+L+
Sbjct: 315 LKISQNMPGMTIKRGDTEALLIDKQEIKTQITVNDGETIVLGGIFQQKNSQAVNKVPILA 374

Query: 390 KIPILGALFRN--SRFNREETEIFIAATPFLV 419
            IP LGALF+    + NR E  IFI  TP L+
Sbjct: 375 DIPWLGALFKQDAQQQNRRELVIFI--TPRLI 404


>gi|170724709|ref|YP_001758735.1| type IV pilus secretin PilQ [Shewanella woodyi ATCC 51908]
 gi|169810056|gb|ACA84640.1| type IV pilus secretin PilQ [Shewanella woodyi ATCC 51908]
          Length = 682

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 23/247 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSF--AADFGGKFVSEGGD------ 244
           QV ++  +  V+ D+ + +G +  I+    S G S S   A D     +    D      
Sbjct: 433 QVLIEARMVTVKDDVSEDLGIKWGISDKQGSKGTSGSIGGAQDIANGIIPSVNDRLNVNF 492

Query: 245 ----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                     F V  + D    +  L ALE+      +A P +T  S Q A++   G  +
Sbjct: 493 PAPEAAASIAFHVAKLADGTILDMELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEI 551

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYR 352
               +SS+GA +V+     + L  TP +    R+   L I  +    V+    G++ S  
Sbjct: 552 PYVEASSSGAATVSFKKAVLSLRVTPQITPDNRVILDLEISQDSQGKVVATPLGEVVSID 611

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            ++  T V +  G TIVL G+ + ++      +P+L  IP +G LFR++    E  E+ I
Sbjct: 612 TQRIGTQVLVDHGETIVLGGIYQQNLISRVSKVPVLGDIPFVGFLFRSTSDKNERQELLI 671

Query: 413 AATPFLV 419
             TP ++
Sbjct: 672 FVTPKII 678


>gi|312879791|ref|ZP_07739591.1| general secretion pathway protein D [Aminomonas paucivorans DSM
           12260]
 gi|310783082|gb|EFQ23480.1| general secretion pathway protein D [Aminomonas paucivorans DSM
           12260]
          Length = 648

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSG------GQHLYKTVSSSTGATSVTTHDYGVVL 316
           L R  AI  L+ P +       +S   G         L +  + S   +S    D G++L
Sbjct: 445 LNRFDAINVLSMPRIMCTDNLESSLQVGQVIPQLKGKLSEVNNPSAVQSSYEYKDTGLIL 504

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             TP + S   + L I+  + E V+  +  D P+   R+  T V + +G TI+L G++K+
Sbjct: 505 KVTPHIRSGNLVALEIEQRIEE-VLTASTVDTPTTTKREIKTNVLVENGQTIILGGIIKE 563

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             + +K  +P LS IP+LG LF ++   RE+ ++ I  TP++++
Sbjct: 564 AEKSMKSRVPGLSYIPLLGNLFTSTVKQREKVDLMIFLTPYILE 607


>gi|187476847|ref|YP_784871.1| general secretion pathway protein D [Bordetella avium 197N]
 gi|115421433|emb|CAJ47938.1| general secretion pathway protein D [Bordetella avium 197N]
          Length = 860

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 112/261 (42%), Gaps = 40/261 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSF------------------AADFG 235
           QV ++  I EV  D   + G Q     G+ +  S SF                  + D  
Sbjct: 416 QVLVESMIVEVSEDKASEFGIQWMTGAGNINSNSTSFIGGTNLGGSGLGGVQGPTSLDVL 475

Query: 236 GKFVSEGGDFSVKGVLDRFSFETV-----LHALERATAIRTLAEPTLTAISGQSASFTSG 290
           GK +S G    VKG +D    + +       A+++      L+ P L  +  QSAS   G
Sbjct: 476 GKGLSLG---VVKGTVDVLGNKVINLGVLARAMQKDGEANILSTPNLLTLDNQSASILVG 532

Query: 291 -------GQHLYKTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
                  GQ++    + S+    ++   D G+ L+  P +   G + L I  EVS   I 
Sbjct: 533 KTVPFVTGQYVTSGGNGSSNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQEVSS--ID 590

Query: 343 VNAGDMPSYRV---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            +     S  V   R  DT+V +  G  IVL GLL+D + Q   G+P LS IPILGALFR
Sbjct: 591 TSNSTAVSGVVTNKRAIDTSVLVEDGQIIVLGGLLEDSVSQGANGVPGLSSIPILGALFR 650

Query: 400 NSRFNREETEIFIAATPFLVK 420
                  +T + +   P++V+
Sbjct: 651 YDSRRHTKTNLMVFLRPYVVR 671


>gi|145298152|ref|YP_001140993.1| type IV pilus biogenesis protein TapQ [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850924|gb|ABO89245.1| type IV pilus biogenesis protein TapQ [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 693

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+ +    +A P +T  + Q  +    G  +    SSS+GA
Sbjct: 514 FQVARLADGTLLDLELSALEKESKAEIIASPRVTT-ANQKPALIEQGTEIPYVESSSSGA 572

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSVT     + L  TP +    R+   L +  +     +    GD  S   +   T V +
Sbjct: 573 TSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDAVSINAQSITTQVLV 632

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G T+VL G+ +  I+     +PLL  IP LG LFR +    ++ E+ I  TP +V
Sbjct: 633 NNGETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSENKKRELLIFVTPKIV 689


>gi|254186538|ref|ZP_04893055.1| general secretion pathway protein D [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157934223|gb|EDO89893.1| general secretion pathway protein D [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 316

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%)

Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322
           L+ P L  +  + A    G Q++      Y  ++S T A +  T+D    G+ LH  P +
Sbjct: 66  LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 124

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
              G + L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ 
Sbjct: 125 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 184

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q     +PLL  IP +G LFR+    R++T + +      ++PV + D           +
Sbjct: 185 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 229

Query: 439 DAKAFFFNRVNKIYG 453
            A+A   NR + I G
Sbjct: 230 TAQAVTSNRYDYIQG 244


>gi|119773310|ref|YP_926050.1| type II and III secretion system protein [Shewanella amazonensis
           SB2B]
 gi|119765810|gb|ABL98380.1| type II and III secretion system protein [Shewanella amazonensis
           SB2B]
          Length = 703

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 17/179 (9%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGAT----SVTT 309
           F  ++ A+   T    LA P++T +  Q A+F  G +   L    +SS G +    +V  
Sbjct: 452 FGALIQAVSSDTNSNVLATPSITTLDNQEAAFIVGDEVPVLTGAQNSSNGNSNPFQTVER 511

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGT 367
            + GV L  TP +     + L I+ EVS    G+N   G   ++  R+  TTV   SG  
Sbjct: 512 KEVGVKLKVTPQINEGNAVKLAIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQI 567

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +VL GL+ +++Q+  + +P+L  IP+LG LF++S   +++  + +      +KP  +RD
Sbjct: 568 VVLGGLINEEVQESVQKVPILGDIPLLGHLFKSSSSGKKKKNLMV-----FIKPTIIRD 621


>gi|104781447|ref|YP_607945.1| type II secretion system protein XcpQ-2; signal peptide
           [Pseudomonas entomophila L48]
 gi|95110434|emb|CAK15142.1| putative type II secretion system protein XcpQ-2; putative signal
           peptide [Pseudomonas entomophila L48]
          Length = 787

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 111/262 (42%), Gaps = 29/262 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKFVSEG----------- 242
           QV ++  I EV  D   + G Q      + G +  F  A+ GG  + +G           
Sbjct: 471 QVVVESLIVEVGEDDANEFGIQWQ--AGNLGKNGLFGGANLGGSGLGKGPTSIDVLPPGL 528

Query: 243 ------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG------ 290
                 G   + GV      + +  AL+       L+ P L  +  ++AS   G      
Sbjct: 529 SVGVVDGTVKIPGVGAVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 588

Query: 291 -GQHLYKTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
            GQ++     +S     ++   + G+ L+  P +   G + L +  EVS      ++   
Sbjct: 589 SGQYVTDGGGNSNNPFQTIQREEVGLRLNVRPQISEGGTVKLDVYQEVSSVDQRASSAAG 648

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R  DT++ L  G  +VL GLL+D   Q  EGIP LS +P +GALFR+ R    +T
Sbjct: 649 TVTNKRAIDTSILLDDGQIMVLGGLLQDGYTQSNEGIPWLSSLPGVGALFRSERRASNKT 708

Query: 409 EIFIAATPFLVKPV-AMRDLSR 429
            + +   P++V+   A R ++R
Sbjct: 709 NLMVFLRPYIVRDANAGRSITR 730


>gi|71280718|ref|YP_271238.1| general secretion pathway protein D [Colwellia psychrerythraea 34H]
 gi|71146458|gb|AAZ26931.1| general secretion pathway protein D [Colwellia psychrerythraea 34H]
          Length = 697

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 10/186 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A+   T    LA P++T +  + A F  G Q +     S+TG+       +V  
Sbjct: 448 WGAIVSAVSSDTNSNILATPSITTLDNEEAYFIVG-QEVPIITGSATGSNNANPFQTVDR 506

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            + G+ L  TP V     + L I+ EVS  V G    D+ S   R+  TTV   SG T++
Sbjct: 507 QEVGIKLRVTPQVNEGNAVQLIIEQEVSS-VSGTTGVDI-SINKREIKTTVMADSGDTVI 564

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLS 428
           L GL+ +D+Q+  + +P+L  IPI+G LF+++  +  +  + +     +V+  A M ++S
Sbjct: 565 LGGLIDEDVQESVQKVPILGDIPIIGHLFKSTSNSTRKRNLMVFLRATIVRDSALMTEIS 624

Query: 429 RPDDHY 434
               +Y
Sbjct: 625 ESKYNY 630


>gi|148360420|ref|YP_001251627.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila str.
           Corby]
 gi|296106514|ref|YP_003618214.1| type IV pilus assembly protein PilQ [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282193|gb|ABQ56281.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila str.
           Corby]
 gi|295648415|gb|ADG24262.1| type IV pilus assembly protein PilQ [Legionella pneumophila 2300/99
           Alcoy]
          Length = 698

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 2/168 (1%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D    +  L ALE       ++ P L   + Q+A   SG +  Y+  +SS GAT+V    
Sbjct: 515 DNILLDLELSALESEGRAELISSPRLITTNQQAAVIESGEEIPYQEATSS-GATAVAFKK 573

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
             + L  TP +   G+I + +Q     P      G +P+   ++  T V + +G TIVL 
Sbjct: 574 AVLSLKVTPQITPDGKILMDLQINQDTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLG 632

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+ K D  ++   IP   ++P++G LF N +   +  E+ I  TP ++
Sbjct: 633 GIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680


>gi|254498863|ref|ZP_05111570.1| putative MSHA biogenesis protein MshL (pilus type IV) [Legionella
           drancourtii LLAP12]
 gi|254351917|gb|EET10745.1| putative MSHA biogenesis protein MshL (pilus type IV) [Legionella
           drancourtii LLAP12]
          Length = 578

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 140/331 (42%), Gaps = 64/331 (19%)

Query: 123 LEMTLRRFIADS---NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           L++TL+  I  +   ++ V  V+  VV++   R ++  +R +++ +  + +         
Sbjct: 227 LQLTLQNMIGKTGGRSVTVNPVAGLVVVYAAPRELKQVERYLDMVQNSMDR--------- 277

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF------AAD 233
                          QV L+  I EV  +   Q+G    + G+S     +F       AD
Sbjct: 278 ---------------QVILEAKILEVNLNNQFQMGINWKLFGASLNALSNFPEVDIAQAD 322

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           F   F     D  V    +   F +V+ ALE    ++ L+ P ++A++ QSA+   G   
Sbjct: 323 FPSAF-----DVDVH--WNPKDFTSVIQALETQGNVQVLSSPRVSAMNNQSAAIKVGFDE 375

Query: 294 LYKT-------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--- 337
            + T             V+      ++T    G+ L  TP + + G++ L +   VS   
Sbjct: 376 FFVTNVSQNQNIVTSSLVTQPILNVNLTPFFSGITLDVTPQIDANGQVTLHVHPTVSLVK 435

Query: 338 --EPVI--GVNAG--DMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
               VI  G   G  ++P  +  +R++DT V   +G  +V+ GL++D   +    +P   
Sbjct: 436 DQRKVIDLGTQGGILNLPLANSTIRESDTIVHAKTGQVVVIGGLMQDTTSEGIGQVPWFG 495

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
            IP LG L R ++   +++E+ I   P LV 
Sbjct: 496 NIPFLGTLVRATKQTSQKSELVILLRPTLVN 526


>gi|167626227|ref|YP_001676727.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596228|gb|ABZ86226.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 582

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 116/258 (44%), Gaps = 33/258 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKS 229
           + V+N +++   DQV ++  I EV R    ++GF ++++            G++S     
Sbjct: 334 RNVINEIDVPN-DQVLIEARIVEVTRTSGLELGFNYTVSHPSGVDVGLKTFGTASESDTV 392

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            A+     +   GG           S E  + ALE  +    +A P L   + ++A F  
Sbjct: 393 VASTAKLAYTLAGG----------LSLEMEIRALENESLANQVASPHLVVANNETA-FIK 441

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--- 346
            GQ +    ++++GA SV   +  + L  TP +   G I + +   V++  +G ++G   
Sbjct: 442 DGQDVPYQQATASGAASVAFQEAVLELQVTPQIAPDGNIVMEVL--VTKNSVGASSGKTS 499

Query: 347 ---DMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
              D+P     R+  T V +  G T+V+ G+      + +  IP L  IP LG LF N+ 
Sbjct: 500 TGEDLPPIIDKREVTTKVMVKDGETVVIGGIYSKKQIETRNKIPFLGDIPYLGYLFSNTV 559

Query: 403 FNREETEIFIAATPFLVK 420
               ++E+ I  TP +++
Sbjct: 560 IGDTDSELLIFITPKIIE 577


>gi|297538911|ref|YP_003674680.1| type II and III secretion system protein [Methylotenera sp. 301]
 gi|297258258|gb|ADI30103.1| type II and III secretion system protein [Methylotenera sp. 301]
          Length = 638

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 18/235 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           +V L++ + EV+R  L+ +G  + ITG S     S         VS G    V G+    
Sbjct: 328 EVMLELQVMEVKRSYLQNLGV-NPITGISVPVPSSGILTVKDLRVS-GNSLVVNGI-PGL 384

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSVTTH--D 311
            F+        +  +  LA P +   +  +A    G +  ++    +STG TS T    D
Sbjct: 385 VFDAT------SGDVNLLANPKIRVKNKDTARIHIGEKVPVFTANVASTGVTSQTVQYID 438

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV----SEPVIGVNAGDMPSYRV--RKADTTVELPSG 365
            G+ L   PT+ +   + ++I   V     + V    A    ++RV  R A T + L  G
Sbjct: 439 AGLKLEVEPTISAADDVTIKINLNVGSIGDKVVASSGASQSIAFRVGTRLATTQLRLHDG 498

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T +LAGL+ D  ++   GIP LSKIP+LG LF N   ++ +TEI ++ TP +++
Sbjct: 499 ETQILAGLIDDQDRKNVSGIPGLSKIPLLGKLFSNQTDDKVKTEIVLSITPHIIR 553


>gi|327482460|gb|AEA85770.1| general secretion pathway protein D [Pseudomonas stutzeri DSM 4166]
          Length = 740

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 10/164 (6%)

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVT-THDY---GVVLH 317
           R   IR+   P L   SGQ A    G +       T S+ TG   +T T  Y   GV+L 
Sbjct: 536 RQAVIRS--SPKLMVRSGQEARIEVGNEIPVVTGTTQSTETGNAPITQTVQYRKTGVLLS 593

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKD 376
             PTV + G + L++  E+SE        ++ P    RK +TT+ L  GG+++LAGL+  
Sbjct: 594 IKPTVQASGVVDLQVSQELSESTDTSTGENLTPVINNRKVETTLTLRDGGSVMLAGLISS 653

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  +   G+PLL  +P +G LF++   +   TE+ +   P++++
Sbjct: 654 NKGRGDTGVPLLGDLPWVGNLFKSQSASENRTELIVMIIPYIIR 697


>gi|93006778|ref|YP_581215.1| type II and III secretion system protein [Psychrobacter
           cryohalolentis K5]
 gi|92394456|gb|ABE75731.1| type II and III secretion system protein [Psychrobacter
           cryohalolentis K5]
          Length = 750

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 15/180 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT------ 309
           +  +L AL+ +T+   L+ P++  +  + AS   G    + T S +TG+ S T       
Sbjct: 490 YGAILQALDSSTSANLLSMPSILTLDNEKASILVGQNVPFVTGSYTTGSDSSTNPFQTID 549

Query: 310 -HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGG 366
             D G+ L+  P + + G + L +  EVS  V G +AG+       K+  +TT+      
Sbjct: 550 RQDIGINLNVIPHIGANGTVRLEVSQEVSSVVPG-SAGNASGLITNKSLINTTILADDQQ 608

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           TI L GL++D+    ++ +P L  +P++G LFR+   N +++ + I      ++P  +RD
Sbjct: 609 TIALGGLMRDNSTTRQQKVPGLGNVPLIGRLFRSDNDNSQKSNLII-----FLQPTILRD 663


>gi|123443548|ref|YP_001007521.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090509|emb|CAL13378.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 648

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 17/200 (8%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
           +++ +  AL   +    LA P++  +    A F  G Q +    S+ T AT     S++ 
Sbjct: 416 NWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 474

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366
              GV+L   P +     + L I+ EVS       VNA ++ S +  R  +  V + SG 
Sbjct: 475 QSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSVFNKRVVNNAVLVKSGE 534

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T+V+ GLL   I ++   +PLL  IP +G LFR S+   E++ + +      ++P  +R+
Sbjct: 535 TVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQSKEKIEKSNLIL-----FIRPTILRE 589

Query: 427 LSRPDDHYSVEDDAKAFFFN 446
            S   D+  V  D  A + N
Sbjct: 590 TS---DYSQVTVDKYAEYNN 606


>gi|296135153|ref|YP_003642395.1| type IV pilus secretin PilQ [Thiomonas intermedia K12]
 gi|295795275|gb|ADG30065.1| type IV pilus secretin PilQ [Thiomonas intermedia K12]
          Length = 752

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 7/162 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E     + ++ P +       A+   G +  Y+  +SS GAT+VT     + L  T
Sbjct: 589 LSAMEADGKGKIISSPRVITADLSKATIEQGTEIPYQQATSS-GATAVTFKKAVLSLDVT 647

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + + ++     P  G +   +PS       T V++ +GGT+VL G+     Q
Sbjct: 648 PQITPDGNVIMNVEIHKDSP--GASTAGVPSINTNTVTTQVQVENGGTVVLGGIYTSQEQ 705

Query: 380 QLKEGIPLLSKIPILGALFRNSR--FNREETEIFIAATPFLV 419
              + +PLL  IP+LG LF+N+   +N+ E  +F+  TP +V
Sbjct: 706 NQTDKVPLLGDIPVLGNLFKNNSKMYNKNELMVFL--TPKIV 745


>gi|300023665|ref|YP_003756276.1| general secretion pathway protein D [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525486|gb|ADJ23955.1| general secretion pathway protein D [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 773

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 97/197 (49%), Gaps = 21/197 (10%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDY---- 312
           +L AL + TA+R ++ P++  +  Q A    G Q   + +   S     S T ++     
Sbjct: 554 ILDALAKETAVRIVSSPSVVVLHNQQAILEVGDQVPIITREAQSVINPDSPTVNEIEFKN 613

Query: 313 -GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGG 366
            GV+L+ TP + S G + + +Q EVS         D      P+   R+  +T+ + SG 
Sbjct: 614 TGVILNVTPRINSNGLVTMEVQQEVSAVQNTSGQSDAATSLTPTISQRRVTSTIAVQSGQ 673

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIFIAATPFLVKPVAMR 425
            +VL GL+++++ + K  IP+++KIP LG +      N R  TE+ +      ++P+ +R
Sbjct: 674 MVVLGGLIREEVSRSKSSIPVINKIPYLGDVLGGETDNGRTRTELVV-----FIRPIVIR 728

Query: 426 DLSRPDDHYSVEDDAKA 442
           +   P+D  +  +  +A
Sbjct: 729 N---PEDASNAAEALRA 742


>gi|30249573|ref|NP_841643.1| general (type II) secretion pathway (GSP) D protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138936|emb|CAD85515.1| General (type II) secretion pathway (GSP) D protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 763

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 9/160 (5%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRI 328
           LA P +   S + A    G +    TV+++     A S T  D G+     P V +   +
Sbjct: 415 LANPRIRVKSREKAKIHIGNKEPVFTVTNTANVGSAASATYIDVGLKFEVEPVVRTNNEV 474

Query: 329 GLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            L+   EVS  +       G NA        R A+T +EL  G T VLAGL++DD+ +++
Sbjct: 475 TLKALLEVSSNLGEKRSGSGENAATAIVIGTRTAETVLELRDGETQVLAGLIQDDLSRVR 534

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            GI  L+ IP+LG +F        +TEI +  TP +V+ V
Sbjct: 535 SGIAGLTDIPVLGDIFSKQVRKHNKTEIILLITPHIVRNV 574


>gi|319789878|ref|YP_004151511.1| type II and III secretion system protein [Thermovibrio ammonificans
           HB-1]
 gi|317114380|gb|ADU96870.1| type II and III secretion system protein [Thermovibrio ammonificans
           HB-1]
          Length = 663

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 13/182 (7%)

Query: 249 GVLDR---FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           G+L++      E  L ALE     + ++ P +  +  Q AS   G +  Y+   S+ GA 
Sbjct: 474 GILNKAQTLRVELALKALEVDGDAQIISSPKVLTLDNQEASIEQGIEIPYR--ESTVGAG 531

Query: 306 SVTTHDYG-----VVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKAD 357
             T++        ++L   P +     I L I+     P    + +  G+ P+   R   
Sbjct: 532 GATSYRIAFKKASLILKVKPHITKDNNILLDIEVRKDSPNYDYVAITGGNEPAINTRNVK 591

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           + V + +G T+V+ G+ + +  + + G+P+LS+IP+LG LF+N      ++++ I  TP 
Sbjct: 592 SRVMIRNGDTVVIGGIYEKERSKSQSGVPVLSRIPLLGWLFKNQTVQVTKSKLLIFITPV 651

Query: 418 LV 419
           L+
Sbjct: 652 LI 653


>gi|88866562|gb|ABD57336.1| TapQ [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 730

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+ +    +A P +T  + Q  +    G  +    SSS+GA
Sbjct: 551 FQVARLADGTLLDLELSALEKESKAEIIASPRVTT-ANQKPALIEQGTEIPYVESSSSGA 609

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSVT     + L  TP +    R+   L +  +     +    GD  S   +   T V +
Sbjct: 610 TSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDAVSINAQSITTQVLV 669

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G T+VL G+ +  I+     +PLL  IP LG LFR +    ++ E+ I  TP +V
Sbjct: 670 NNGETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSENKKRELLIFVTPKIV 726


>gi|242277876|ref|YP_002990005.1| type II and III secretion system protein [Desulfovibrio salexigens
           DSM 2638]
 gi|242120770|gb|ACS78466.1| type II and III secretion system protein [Desulfovibrio salexigens
           DSM 2638]
          Length = 534

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 112/237 (47%), Gaps = 13/237 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV++K  + EV      ++GF+   + ++ G     A DFG  F   G   + +  L +F
Sbjct: 269 QVSIKAYLVEVTLTDETKLGFEWMFSTNADGTDLKGALDFGHIFDPTGIANTAQEAL-KF 327

Query: 255 S------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATS 306
           S      F+ +++      + R ++ P + A+  Q AS   G +   L  T +S T   +
Sbjct: 328 SIINSDNFKMMMNFFASDDSSRVVSAPHIVALDNQKASIAVGTEIPILKLTQTSVTSQQN 387

Query: 307 VT-THD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           V  T+D   +G+ L+ TPT+     + L+I   +S  +      D      R A TTV +
Sbjct: 388 VIKTYDHRKFGMQLNITPTIAENRDVTLKIDQTLSSLLADDTDPDKWQSTDRAASTTVLV 447

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
               T+V+ GL+  +    K+G P L  +P+LG LF +   +  ++E+ +  TP+++
Sbjct: 448 KDAQTLVIGGLMTVNSALDKKGAPYLRNMPVLGPLFGSQDDSMTKSELLLFLTPYVI 504


>gi|224826467|ref|ZP_03699569.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
 gi|224601568|gb|EEG07749.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
          Length = 659

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 10/182 (5%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVV 315
           VLH   + T    LA P +   + + A    G +        V ++  A SV+  D GV 
Sbjct: 407 VLHLQAQDTDANVLANPRIRVKNHEKAKIHIGDKVPVFTSTAVVNAGIAQSVSYLDVGVK 466

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGL 373
           L   P++     + + +  EVS  V  V+ G   +Y++  R ADTT+ L  G T VLAGL
Sbjct: 467 LEVKPSIGLDDDVTIDVGLEVSSIVKQVDFGTSTAYQIGSRAADTTLRLRDGETQVLAGL 526

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           ++D+ ++    IP L  +PI+G LF ++  +R ++EI +  TP +V      +L  PD  
Sbjct: 527 IQDEDRRSITKIPGLGDLPIVGRLFSSNNDSRSKSEIVLLITPHIV-----HNLDLPDRQ 581

Query: 434 YS 435
            S
Sbjct: 582 IS 583


>gi|87120710|ref|ZP_01076603.1| general secretion pathway protein D [Marinomonas sp. MED121]
 gi|86163938|gb|EAQ65210.1| general secretion pathway protein D [Marinomonas sp. MED121]
          Length = 616

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 21/249 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFVSE-----GGDFS 246
           QV ++  I E+     +++G Q  I GS    SG + + A        S          +
Sbjct: 336 QVLIEAVIVEITVTDEEELGVQWLIGGSDEIISGTNFTSAGSSANTIASSINSSTANTLA 395

Query: 247 VKG--VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSST 302
             G  +L   +F  ++ AL+  T    L+ P +  +  Q A    G    ++T   S  +
Sbjct: 396 TGGTAILGDTNFGAIIQALQSKTNSNLLSTPKILTLDNQEARILVGETRPFQTGEYSEDS 455

Query: 303 GATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYR-VRKAD 357
            +T VTT   D G+ L  TP + S    G  ++ EV + V   +  A D+ +   VR+ +
Sbjct: 456 DSTFVTTSREDVGLTLKVTPHINS----GNEVKMEVFQTVESASDEASDLGTITTVREVE 511

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V      TIVL GL++D+I + K+ +P L  +P +G LFR+S F+ ++  + +   P 
Sbjct: 512 TVVIAGDRQTIVLGGLIQDNITESKQKVPFLGDLPFVGGLFRSSSFSIDKKNLLVFIRPT 571

Query: 418 LVKPVAMRD 426
           +++  A  D
Sbjct: 572 IIRGKAKAD 580


>gi|115524675|ref|YP_781586.1| general secretion pathway protein D [Rhodopseudomonas palustris
           BisA53]
 gi|115518622|gb|ABJ06606.1| general secretion pathway protein D [Rhodopseudomonas palustris
           BisA53]
          Length = 789

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 18/235 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-----VSEGGDFSVKG 249
           QV ++VTIAE+      Q G Q  +       S +F+A  GG        S  G   V G
Sbjct: 531 QVNIEVTIAEITLTSELQYGVQFFLK------SGNFSAGLGGASGIPLRTSYPGLNLVSG 584

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSSTGA 304
            L     + VL AL + T+++ L+ P+L  +  Q A    G Q         +  S+   
Sbjct: 585 AL--LDPQVVLDALAQFTSVKVLSSPSLVVLDRQPAVLQVGDQIPILTRQLTSAESTATV 642

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           ++V   D G++L+  P V + G + L ++ ++S  V        P+   R+  + + + S
Sbjct: 643 SNVDLKDTGIILNVLPRVNANGLVTLNVEQQISNVVSTQPDTLTPTISQRRVKSVISVSS 702

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G T++LAGL+ D     + G+P++S+I +L  L  +       TE+ I   P ++
Sbjct: 703 GQTVLLAGLITDGQNINRNGLPVVSQIKVLSDLLSSHDRTASRTELIIFIRPKII 757


>gi|92116356|ref|YP_576085.1| type II and III secretion system protein [Nitrobacter hamburgensis
           X14]
 gi|91799250|gb|ABE61625.1| type II and III secretion system protein [Nitrobacter hamburgensis
           X14]
          Length = 773

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 119/283 (42%), Gaps = 54/283 (19%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------PSKSFAADFGG 236
           QV +  TIAEV        G Q  +T  + G                  P+ +   D  G
Sbjct: 484 QVAIDATIAEVTLTNELSYGVQSYLTSKNLGMKANQGSLLNTQSNAAPIPTSAGTTDLAG 543

Query: 237 KFVSEGGDFSVKGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFT 288
              S    F +   L  F+F          +L AL   T+++ L+ P+L  I+ Q+A+  
Sbjct: 544 AAGSVANAF-INRALPGFNFLIGSEAQPAVILDALHAVTSVKVLSNPSLVVINNQTATLQ 602

Query: 289 SGGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            G      TV  STG             S+   + G++L  +P +   G + L ++ E+S
Sbjct: 603 VG-----DTVPVSTGTATVLNGNNNVVNSIDYRNTGIILRVSPRINVNGNVRLEVEQEIS 657

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 ++   P+   R+  +++ + SG T++LAGL+ +     + GIPLL +I  LG  
Sbjct: 658 SVQPTASSTLTPTVAERRVKSSISVASGQTVLLAGLISEQQNGGRSGIPLLDEIRGLGDA 717

Query: 398 F--RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           F  +  R  R E  IFI       +P  +RD +  D H+  E+
Sbjct: 718 FAHQGKRGTRTELIIFI-------RPQIIRDGT--DAHHVAEE 751


>gi|294339205|emb|CAZ87559.1| Putative Type IV pilus biogenesis secretin PilQ [Thiomonas sp. 3As]
          Length = 746

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 7/162 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E     + ++ P +       A+   G +  Y+  +SS GAT+VT     + L  T
Sbjct: 583 LSAMEADGKGKIISSPRVITADLSKATIEQGTEIPYQQATSS-GATAVTFKKAVLSLDVT 641

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + + ++     P  G +   +PS       T V++ +GGT+VL G+     Q
Sbjct: 642 PQITPDGNVIMNVEIHKDSP--GASTAGVPSINTNTVATQVQVENGGTVVLGGIYTSQEQ 699

Query: 380 QLKEGIPLLSKIPILGALFRNSR--FNREETEIFIAATPFLV 419
              + +PLL  IP+LG LF+N+   +N+ E  +F+  TP +V
Sbjct: 700 NQTDKVPLLGDIPVLGNLFKNNSKMYNKNELMVFL--TPKIV 739


>gi|330872058|gb|EGH06207.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 681

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 32/256 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   + ++SG  K  ++  D  G               F
Sbjct: 428 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPF 487

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 488 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 547

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 548 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 601

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 602 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 661

Query: 409 EIFIAATPFLVKPVAM 424
           E+ +  TP ++   A+
Sbjct: 662 ELLVFLTPRIMNNQAI 677


>gi|119943949|ref|YP_941629.1| type IV pilus secretin PilQ [Psychromonas ingrahamii 37]
 gi|119862553|gb|ABM02030.1| type IV pilus secretin PilQ [Psychromonas ingrahamii 37]
          Length = 689

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 116/253 (45%), Gaps = 18/253 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----AADFGG 236
           KK++ +L+I    QV ++  +  V   + +++G +  +T +SS    S      A D  G
Sbjct: 446 KKMIQILDIPVR-QVVIEARMVTVDDSVSEELGVKWGMTSTSSSTVDSLNVNLPATDAAG 504

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
               +   FS   +LD       L ALE       +A P +T  + Q+A    G +  Y 
Sbjct: 505 TIAFKLAKFSNGDILD-----LELSALESENKAEIIASPRITTANQQTAYIEQGTEIPY- 558

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYR 352
             S+S+GATSV      + L  TP +    ++ L +  E+++  +G       G+  +  
Sbjct: 559 VESASSGATSVAFKKAVLSLTVTPQITPDNKVILDL--EITQDTVGETVSAGTGEAVAID 616

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +K  T V + +G T+VL G+ +         +PLL  IP LGALFR++     ++E+ I
Sbjct: 617 TQKIGTQVLVGNGETLVLGGIYQQRNSIAVSKVPLLGDIPYLGALFRSTNEENTKSELLI 676

Query: 413 AATPFLVKPVAMR 425
             TP +V     R
Sbjct: 677 FVTPRIVMQTKFR 689


>gi|298527731|ref|ZP_07015135.1| general secretion pathway protein D [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511383|gb|EFI35285.1| general secretion pathway protein D [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 703

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 117/254 (46%), Gaps = 28/254 (11%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSIT-GSSSGPSKSF--AADFGGKF 238
           VM  L++  + QV ++V IAEVR     ++G  +Q+ ++ G        F  AAD     
Sbjct: 435 VMEKLDLYPK-QVLIEVIIAEVRLSDATKMGVDWQYILSFGDRLSGELRFDPAAD---AL 490

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF---------TS 289
              GG F V+        +  L+A      ++ L+ PTL A   + A+          TS
Sbjct: 491 PGAGGVFRVES---SRRLKAALYAAVDDAKLQILSTPTLLASDNRPATINIGDQVPFPTS 547

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNA 345
             Q L  T +S    T++   D G++L  TP +   G + + I  EVS      V G+ A
Sbjct: 548 TRQRLDDTDTSEVIDTTIQYRDTGIILRVTPKINRHGMVRMEIVQEVSSLTARRVEGITA 607

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P    R A+TT+ +    TIV+AGL++ +  +   G+P   +IP++  LF  S    
Sbjct: 608 ---PVINTRHAETTLAVDDQETIVIAGLMEQERSRGYSGVPGFRRIPVVKHLFGTSETRF 664

Query: 406 EETEIFIAATPFLV 419
           E TE+ +  TP ++
Sbjct: 665 ENTELLVFITPHVI 678


>gi|77456637|ref|YP_346142.1| type II and III secretion system protein [Pseudomonas fluorescens
           Pf0-1]
 gi|77380640|gb|ABA72153.1| pilus secretin [Pseudomonas fluorescens Pf0-1]
          Length = 692

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 20/249 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIG------FQHSITGSSSGPSKSFAADFG--------GKFVS 240
           QV ++  I E   D  K +G       Q+    ++SG S   +   G          FV 
Sbjct: 441 QVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGVSNGSSTTIGTPGSTSTNSPFVD 500

Query: 241 EGGDFSVKGV-----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
            G   +  G+      D    +  L A+E+      +++P +     ++A    G +  Y
Sbjct: 501 MGTVNNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPY 560

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           +  SSS GATSV+  +  + L  TP +    RI + ++    EP       D+P  +  +
Sbjct: 561 QEASSS-GATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNE 619

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    + +++E+ +  T
Sbjct: 620 VNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLT 679

Query: 416 PFLVKPVAM 424
           P ++   A+
Sbjct: 680 PRIMNNQAI 688


>gi|242316560|ref|ZP_04815576.1| general secretion pathway protein D [Burkholderia pseudomallei
           1106b]
 gi|242139799|gb|EES26201.1| general secretion pathway protein D [Burkholderia pseudomallei
           1106b]
          Length = 235

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 25/179 (13%)

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           GQ+    +G    Y  ++S T A +  T+D    G+ LH  P +   G + L++ TE S 
Sbjct: 3   GQNVPIPTGS---YSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSA 59

Query: 339 PVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            V G N        P++  R   +TV   +G  IVL GL++D+ Q     +PLL  IP +
Sbjct: 60  VVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWI 119

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           G LFR+    R++T + +      ++PV + D           + A+A   NR + I G
Sbjct: 120 GQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RETAQAVTSNRYDYIQG 163


>gi|145300802|ref|YP_001143643.1| MSHA biogenesis protein MshL [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|88866576|gb|ABD57345.1| MshL [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853574|gb|ABO91895.1| MSHA biogenesis protein MshL [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 556

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 26/238 (10%)

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           ITG SS             F + GG    K  +   +F   ++ L+    + TL+ P +T
Sbjct: 311 ITGGSSLSPTQLPTTPNQIFTALGGGAGFK--ISDGNFNVAVNLLKTQGDVNTLSSPRVT 368

Query: 279 AISGQSASFTSGGQHLYKT------------VSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
           A + Q A    G    + T            VS  T    +T    G+ L  TP +   G
Sbjct: 369 ATNNQKAVIKVGTDEYFVTKASTTITSNSSGVSDRTPNVELTPFFSGISLDVTPQIDEEG 428

Query: 327 RIGLRIQ-----TEVSEPVI--GVNAG--DMPSYR--VRKADTTVELPSGGTIVLAGLLK 375
           ++ L I      TE    VI  G + G  ++P  +  +R++DT V+  +G  IV+ GL+K
Sbjct: 429 KVLLHIHPSVIDTEEQNKVIDMGTSGGRLELPLAKSSIRESDTVVQANNGDIIVIGGLMK 488

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDD 432
            D Q++   +PLL  IP +G  F N R + ++ E+ I   P +V K     +L R  D
Sbjct: 489 TDKQEIVSKVPLLGDIPWIGEAFTNRRESTKKVELVILLKPTVVEKDTWQNELKRSAD 546


>gi|70730124|ref|YP_259863.1| general secretion pathway protein D [Pseudomonas fluorescens Pf-5]
 gi|68344423|gb|AAY92029.1| general secretion pathway protein D [Pseudomonas fluorescens Pf-5]
          Length = 794

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 12/188 (6%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G   + G+      + +  AL+       L+ P L  +  ++AS   G    + T S  T
Sbjct: 538 GTVDIPGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVT 597

Query: 303 GA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352
           G          +V   + G+ L+  P +   G + L I  EVS  +    V+AG + + R
Sbjct: 598 GGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSSVDQRASVDAGTVTNKR 657

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
               DT++ L  G  +VL GLL+D   Q  + +P LS IP LG LFRN + +  +T + +
Sbjct: 658 A--IDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMV 715

Query: 413 AATPFLVK 420
              P++++
Sbjct: 716 FLRPYIIR 723


>gi|320330838|gb|EFW86812.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 701

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 32/248 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   + ++SG  K  ++  D  G               F
Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPF 507

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 508 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681

Query: 409 EIFIAATP 416
           E+ +  TP
Sbjct: 682 ELLVFLTP 689


>gi|71733370|ref|YP_272697.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71553923|gb|AAZ33134.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 701

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 32/248 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   + ++SG  K  ++  D  G               F
Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPF 507

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 508 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681

Query: 409 EIFIAATP 416
           E+ +  TP
Sbjct: 682 ELLVFLTP 689


>gi|320322061|gb|EFW78157.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 701

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 32/248 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   + ++SG  K  ++  D  G               F
Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPF 507

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 508 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681

Query: 409 EIFIAATP 416
           E+ +  TP
Sbjct: 682 ELLVFLTP 689


>gi|120553686|ref|YP_958037.1| pilus (MSHA type) biogenesis protein MshL [Marinobacter aquaeolei
           VT8]
 gi|120323535|gb|ABM17850.1| pilus (MSHA type) biogenesis protein MshL [Marinobacter aquaeolei
           VT8]
          Length = 572

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 113/257 (43%), Gaps = 28/257 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-FGGKFVSE---GGDFSVKGV 250
           QV L+  I EV  +   Q G   +   SS+G +  F +   GG+ +     GG FS    
Sbjct: 286 QVVLEAKILEVGLNEGYQQGIDWNDVQSSAGRADYFTSQSLGGQQIRTPDIGGLFS--AT 343

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----------VS 299
           +    F  ++  L +   ++ L+ P ++ ++ Q A    G    + T            +
Sbjct: 344 VSAGDFTGLIELLGQQGNVQILSSPRISTVNNQKAVIKVGTDEFFVTDIDFDDNNSAVTA 403

Query: 300 SSTGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGD--MPS 350
           + + +TSV    +  G+ L  TP +   G I L +   VSE      VI +   D  +P 
Sbjct: 404 TDSTSTSVELTPFFSGISLDVTPQIAEDGAITLHVHPSVSEVADQEKVITIGERDVTLPL 463

Query: 351 YR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            R  VR+ D+ +   SG  +V+ GL+++  +     +P  S+IP+LG LF+   F   ++
Sbjct: 464 ARSTVRETDSVIRAESGQIVVIGGLIQNSSEDNNSAVPFFSEIPLLGELFKQRNFESRKS 523

Query: 409 EIFIAATPFLVKPVAMR 425
           E+ I   P +     M+
Sbjct: 524 ELVILLRPVVANAGQMQ 540


>gi|311695246|gb|ADP98119.1| type II and III secretion system protein [marine bacterium HP15]
          Length = 663

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 115/255 (45%), Gaps = 40/255 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFG--GKFVSE---------- 241
           QV ++  I E+  ++ + +G Q ++ G  SG S   A  +FG  G+ + E          
Sbjct: 362 QVMIEAAIVEISDELGQDLGVQVAV-GDESGESTPVAGTNFGNVGRSLGEVLSAILTGSA 420

Query: 242 -----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                       G  +  GV    S+  +L AL  + A   L+ P++  +  Q +    G
Sbjct: 421 ITPATGGITIGAGQRNENGV----SWGVLLQALSTSAAANLLSTPSIITLDNQESEIIVG 476

Query: 291 GQHLYKTVSSS-TGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               ++T  S+ TG       T++   D G+ L  TPT+ + G + L ++ + +E V   
Sbjct: 477 QNVPFRTGQSTVTGDGTTNPFTTIERRDIGLTLKVTPTISADGLVRLVVE-QTTESVADS 535

Query: 344 --NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             NA D+ + + R+  TTV    G TIVL GL +DD Q  K  +PLL  IP +G LF + 
Sbjct: 536 IENASDIVTNK-REIKTTVLADDGETIVLGGLTRDDYQVNKSKVPLLGDIPFVGRLFSSE 594

Query: 402 RFNREETEIFIAATP 416
              R +  + +   P
Sbjct: 595 SERRVKRNLLVFLRP 609


>gi|322421237|ref|YP_004200460.1| general secretion pathway protein D [Geobacter sp. M18]
 gi|320127624|gb|ADW15184.1| general secretion pathway protein D [Geobacter sp. M18]
          Length = 638

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 111/254 (43%), Gaps = 27/254 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAA--DFG-----GKFVSEGGDFS 246
           QV ++  IAEV  +  K +G Q   IT +S+G   +      FG        V+      
Sbjct: 356 QVYVQAMIAEVSVNKAKDLGVQLGVITAASNGTVSAIGTFDPFGTVAGLSTTVTAAKALG 415

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTA--------ISGQSASFTSGGQHLYKTV 298
           ++  L + +   VL AL+   A+  L+ P +            G+S  F SG      T 
Sbjct: 416 MEVTLGKVNIPVVLQALQTNGALNVLSTPNIMTSDNKEAEIFVGESVPFVSG------TN 469

Query: 299 SSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRK 355
            +STG +  S+   D G++L   P +     + L I  E+S     G           R 
Sbjct: 470 LTSTGLSQQSIERKDTGIILKIKPQISEGEYVKLDIYQEISAVKEFGTATESNLGSTKRS 529

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A T+V + +  T+++ GL++D  Q  +  IPLL  IP LG LF+     R++  + I  T
Sbjct: 530 AKTSVVVKNSDTVLIGGLIQDTDQVTESKIPLLGDIPGLGWLFKTRSTKRDKVNLLIMLT 589

Query: 416 PFLVKPVAMRDLSR 429
           P ++K    RD++ 
Sbjct: 590 PRIIKDA--RDMAE 601


>gi|257483507|ref|ZP_05637548.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330984730|gb|EGH82833.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009590|gb|EGH89646.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 701

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 32/248 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   + ++SG  K  ++  D  G               F
Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPF 507

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 508 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681

Query: 409 EIFIAATP 416
           E+ +  TP
Sbjct: 682 ELLVFLTP 689


>gi|154249944|ref|YP_001410769.1| type II and III secretion system protein [Fervidobacterium nodosum
            Rt17-B1]
 gi|154153880|gb|ABS61112.1| type II and III secretion system protein [Fervidobacterium nodosum
            Rt17-B1]
          Length = 1519

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 2/152 (1%)

Query: 270  RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGR 327
            + LA P +   SG+ A    G     K VS+S G T+  V + + G+ L   P V +   
Sbjct: 1363 KLLANPNIMTKSGEEARIFIGDSIPLKIVSTSGGQTNEQVISLEGGIELKIVPYVNADNT 1422

Query: 328  IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            I L I T VS     V    +P    R A T + +  G T+V+ GL +++  + +  +P+
Sbjct: 1423 IDLVITTSVSNFDYSVLVNGLPKINKRDASTKITIKDGQTLVIGGLSREEKSKSEWKVPI 1482

Query: 388  LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L  IPILG LFR ++   E+  I I  T  +V
Sbjct: 1483 LGDIPILGYLFRGTKEASEQRSITIFLTAKIV 1514


>gi|170719573|ref|YP_001747261.1| type IV pilus secretin PilQ [Pseudomonas putida W619]
 gi|169757576|gb|ACA70892.1| type IV pilus secretin PilQ [Pseudomonas putida W619]
          Length = 422

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGGKFVSEGGDFSV--KGV 250
           QV ++  I E   D    +G +      S  P+  K    D G +       F V   GV
Sbjct: 190 QVEIEARIVEANVDYENSLGVRWGPRLYSEAPALGKDVFVDLGMERAGSSIGFGVLRGGV 249

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           L     +  L A+E+      +++P +   + ++A    G +  Y+  + S GATSVT  
Sbjct: 250 L----LDLELSAMEKTGNGEIISQPKVVTANNETARILKGTEVPYQETTKS-GATSVTFR 304

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIV 369
           +  + L  TP +   G++ + ++    EP   VNA  D+P  R  + +  V +  G TIV
Sbjct: 305 EASLSLEVTPQITPDGKVIMTVKVTKDEPDF-VNALNDVPPIRKNEVNAKVRVADGETIV 363

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           + G+       + + +P    +P +G LFR      +++E+ +  TP
Sbjct: 364 IGGVYSTTQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 410


>gi|254244921|ref|ZP_04938243.1| hypothetical protein PA2G_05797 [Pseudomonas aeruginosa 2192]
 gi|126198299|gb|EAZ62362.1| hypothetical protein PA2G_05797 [Pseudomonas aeruginosa 2192]
          Length = 803

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 12/191 (6%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295
           G   + G+      + +  AL+       L+ P L  +  +SAS   G       GQ++ 
Sbjct: 547 GTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVT 606

Query: 296 KTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352
               +S     ++   D G+ L+  P +   G + L +  EVS  +      AG + + R
Sbjct: 607 DGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKR 666

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
               DT++ L  G  +VL GLL+D++Q   +G+P LS +P +G+LFR  + +R +T + +
Sbjct: 667 A--IDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMV 724

Query: 413 AATPFLVKPVA 423
              P++V+  A
Sbjct: 725 FLRPYIVRDAA 735


>gi|254429767|ref|ZP_05043474.1| general secretion pathway protein D [Alcanivorax sp. DG881]
 gi|196195936|gb|EDX90895.1| general secretion pathway protein D [Alcanivorax sp. DG881]
          Length = 694

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 35/255 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------ 242
           Q+ ++  I E+  +  K +GFQ+    + SG     A +FGG  +S              
Sbjct: 349 QILIEAAIVEISGEQGKNLGFQYVGGSNESGVG---AVNFGGGGLSINSIVQALATDDPS 405

Query: 243 ----GDFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
               GD    G+ +  S     +  ++ AL  ++ +  L+ P++  +  + AS   G   
Sbjct: 406 GLSLGDGITAGLGETDSNGDLKWGALVQALSTSSDVNLLSTPSILTLDNEEASIVVGENV 465

Query: 294 LYKT-VSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
            + T  S++TG+      T++   D G+ L  TP V   G   +R++ E     +  +AG
Sbjct: 466 PFVTGQSTNTGSGVSNPFTTIQREDVGLTLKVTPHV--AGLSTIRLELEQENSAVKDSAG 523

Query: 347 DMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           D        RK  +TV      TI L GL+KDDI+     +PLL  IP LG LFR++  +
Sbjct: 524 DAVDIVTTTRKLQSTVLADDAETIALGGLIKDDIRVTVRKVPLLGDIPFLGFLFRSTSKD 583

Query: 405 REETEIFIAATPFLV 419
           R ++ + +   P ++
Sbjct: 584 RVKSNLMVFLKPTIL 598


>gi|330877965|gb|EGH12114.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 701

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 32/248 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   S   S SG   ++  D  G               F
Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAGNTSGNLTSNVPF 507

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 508 VDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681

Query: 409 EIFIAATP 416
           E+ +  TP
Sbjct: 682 ELLVFLTP 689


>gi|116048592|ref|YP_792609.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115583813|gb|ABJ09828.1| probable type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 803

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 12/191 (6%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295
           G   + G+      + +  AL+       L+ P L  +  +SAS   G       GQ++ 
Sbjct: 547 GTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVT 606

Query: 296 KTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352
               +S     ++   D G+ L+  P +   G + L +  EVS  +      AG + + R
Sbjct: 607 DGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKR 666

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
               DT++ L  G  +VL GLL+D++Q   +G+P LS +P +G+LFR  + +R +T + +
Sbjct: 667 A--IDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMV 724

Query: 413 AATPFLVKPVA 423
              P++V+  A
Sbjct: 725 FLRPYIVRDAA 735


>gi|146307949|ref|YP_001188414.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
 gi|145576150|gb|ABP85682.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
          Length = 645

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 15/151 (9%)

Query: 282 GQSASFTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
           GQ+  F +G    Y T +S  G   T++   D GV L  TP++     + L I+ E+S  
Sbjct: 455 GQNVPFQTGS---YTTDASGAGNPFTTIERKDIGVTLKVTPSINEGATLRLEIEQEISSI 511

Query: 339 -PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            P  G+NA   D+ + + R   +T+    G  IVL GL++DD+ Q    +PLL  IP++G
Sbjct: 512 APSTGLNAQAVDLVTNK-RSIKSTILADDGQVIVLGGLIQDDVTQSISKVPLLGDIPLIG 570

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            LFR++R +  +  + +      ++P  +RD
Sbjct: 571 GLFRSTRDSHVKRNLMV-----FLRPTVVRD 596


>gi|170729053|ref|YP_001763079.1| general secretion pathway protein D [Shewanella woodyi ATCC 51908]
 gi|169814400|gb|ACA88984.1| general secretion pathway protein D [Shewanella woodyi ATCC 51908]
          Length = 714

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGAT----SVTT 309
           F  ++ A+   T    LA P++T +  Q ASF  G +   L    +SS G +    +V  
Sbjct: 449 FGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGAQNSSNGNSNPFQTVER 508

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGT 367
            + GV L   P +     + L I+ EVS    G+N   G   ++  R+  TTV   SG  
Sbjct: 509 KEVGVKLKVVPQINEGSSVKLTIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQI 564

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +VL GL+ +++Q+  + +P L  IPI+G LF++S   +++  + +      +KP  +RD
Sbjct: 565 VVLGGLINEEVQESVQKVPFLGDIPIIGHLFKSSSSGKKKKNLMV-----FIKPTIIRD 618


>gi|330807111|ref|YP_004351573.1| Type IV fimbriae biogenesis protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375219|gb|AEA66569.1| Type IV fimbriae biogenesis protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 696

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 20/249 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGF------QHSITGSSSGPSKSFAADFGGK--------FVS 240
           QV ++  I E   D  K +G       Q+    SSSG +   +   G          FV 
Sbjct: 445 QVMIEARIVEANVDYDKSLGVRWGGSVQNKGNWSSSGVTTGDSTTVGTPGSTSTNQPFVD 504

Query: 241 EGGDFSVKGV-----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
            G   +  G+      D    +  L A+E+      +++P +     ++A    G +  Y
Sbjct: 505 LGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPY 564

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           +  SSS GATSV+  +  + L  TP +    RI + ++    EP       D+P  +  +
Sbjct: 565 QEASSS-GATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVNDVPPIKKNE 623

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++E+ +  T
Sbjct: 624 VNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSDSKSELLVFLT 683

Query: 416 PFLVKPVAM 424
           P ++   A+
Sbjct: 684 PRIMNNQAI 692


>gi|157373684|ref|YP_001472284.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sediminis
           HAW-EB3]
 gi|157316058|gb|ABV35156.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sediminis
           HAW-EB3]
          Length = 567

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 106/219 (48%), Gaps = 28/219 (12%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302
            SVKG     +F T+++ L+    +  L+ P +TA + Q A    G    + T  SST  
Sbjct: 348 LSVKG----SNFNTMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTV 403

Query: 303 -GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAG--D 347
            G T VTT +        G+ L  TP +   G I L I   V +      VI ++    +
Sbjct: 404 AGTTPVTTPEVELTPFFSGIALDVTPQIDGEGNILLHIHPSVIDIKEQTKVIKISGSSLE 463

Query: 348 MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           +P  +  +R++DT ++  +G  +V+ GL+K +  +++  +PLL  IP++G LF N   + 
Sbjct: 464 LPLAQSDIRESDTVIKAKTGDVVVIGGLMKSENIEVESKVPLLGDIPLVGELFTNRSKSL 523

Query: 406 EETEIFIAATPFLVKPVAMR-DLSRP----DDHYSVEDD 439
           ++TE+ I   P +V     R +L +     D  Y  ED+
Sbjct: 524 KKTELVILLKPTVVGADTWRKELQKSKALLDRWYPEEDE 562


>gi|107100151|ref|ZP_01364069.1| hypothetical protein PaerPA_01001172 [Pseudomonas aeruginosa PACS2]
          Length = 786

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 12/191 (6%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295
           G   + G+      + +  AL+       L+ P L  +  +SAS   G       GQ++ 
Sbjct: 530 GTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVT 589

Query: 296 KTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352
               +S     ++   D G+ L+  P +   G + L +  EVS  +      AG + + R
Sbjct: 590 DGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKR 649

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
               DT++ L  G  +VL GLL+D++Q   +G+P LS +P +G+LFR  + +R +T + +
Sbjct: 650 A--IDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMV 707

Query: 413 AATPFLVKPVA 423
              P++V+  A
Sbjct: 708 FLRPYIVRDAA 718


>gi|149378291|ref|ZP_01896001.1| Type II secretory pathway, component PulD [Marinobacter algicola
           DG893]
 gi|149357425|gb|EDM45937.1| Type II secretory pathway, component PulD [Marinobacter algicola
           DG893]
          Length = 650

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 42/259 (16%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----------DFGGKFVSE-- 241
           QV ++  I E+  ++ + +G Q ++ G  SG S   A            D  G  +S+  
Sbjct: 352 QVMIEAAIVEISDELGQDLGVQLAL-GDESGESTPVAGTNFNNVGRSLGDVLGAILSDSV 410

Query: 242 -----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                       G  +  GV    S+  +L AL  + A   L+ P++  +  Q +    G
Sbjct: 411 IAPATGGITIGAGQRNENGV----SWGVLLQALSTSAAANLLSTPSIITLDNQESEIIVG 466

Query: 291 GQHLYKTVSSS-TGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342
               ++T  S+ TG       T++   D G+ L  TPT+ + G +  R+  E +   IG 
Sbjct: 467 QNVPFRTGQSTVTGDGTTNPFTTIERRDIGLTLKVTPTISADGLV--RLVVEQTTENIGD 524

Query: 343 --VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
              +A D+ + + R+  TTV    G TIVL GL  DD+Q  K  +PLL  IP+LG LF +
Sbjct: 525 SVESASDIITNK-REIKTTVLADDGETIVLGGLTTDDLQVNKSKVPLLGDIPVLGRLFSS 583

Query: 401 SRFNREETEIFIAATPFLV 419
               R +  + +   P ++
Sbjct: 584 ESERRVKRNLLVFLRPTIM 602


>gi|109899541|ref|YP_662796.1| type II and III secretion system protein [Pseudoalteromonas
           atlantica T6c]
 gi|109701822|gb|ABG41742.1| type II and III secretion system protein [Pseudoalteromonas
           atlantica T6c]
          Length = 711

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 117/253 (46%), Gaps = 21/253 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRF 254
           V ++V +AEV+ +  +  G +  +  SS G     ++  GG  +   G + ++       
Sbjct: 452 VMVEVILAEVQLNDSEDTGVEW-LANSSLGRFGITSSTIGGLGLGASGFNMTLDSAGQTR 510

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------V 307
           +   + +  E+A  IR+   P L   SG  AS   G +    T +S +   S       +
Sbjct: 511 AMLNLFYKNEKAN-IRS--RPRLMVKSGGEASIDVGNEIPVITSNSQSTTDSDAVVLQTI 567

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGG 366
           +    GV+L   PTV + G + + I  E+SE     ++  D P+   RK  TTV L  GG
Sbjct: 568 SYRKTGVLLEVKPTVHASGFVDIEITQELSEATETSSSDIDSPTILNRKISTTVTLRDGG 627

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +++L GL+        +G+P+L ++P++G LF      ++ TE+ I   P++        
Sbjct: 628 SVLLGGLISSTTSTGTQGVPILGRLPMIGKLFSTDSNAQDRTELMIMIIPYI-------- 679

Query: 427 LSRPDDHYSVEDD 439
           L+ PD+   + D+
Sbjct: 680 LNSPDEAEQLTDE 692


>gi|241767965|ref|ZP_04765503.1| type II and III secretion system protein [Acidovorax delafieldii
           2AN]
 gi|241360839|gb|EER57693.1| type II and III secretion system protein [Acidovorax delafieldii
           2AN]
          Length = 381

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 17/164 (10%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           I G +  F +G    Y     ++GA    T+V   D G++L   P +   G + L I  E
Sbjct: 209 IIGSNVPFVTGS---YANTGGNSGAVNPFTTVERKDVGLMLKVRPQINENGTVKLAIYQE 265

Query: 336 VSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           VS+     V+  + P+   R  ++ V +  G  IV+ GLL+D   Q ++ +PL+  IP+L
Sbjct: 266 VSKIDEATVSNANGPTTSKRSIESNVLVEDGNIIVIGGLLEDSYSQGEDKVPLMGDIPLL 325

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD----DHY 434
           G LFR+   +R++T + +      ++PV +RD +  D    D Y
Sbjct: 326 GNLFRSENRSRKKTNLMV-----FLRPVVVRDAAASDALMIDRY 364


>gi|224370094|ref|YP_002604258.1| GspD2 [Desulfobacterium autotrophicum HRM2]
 gi|223692811|gb|ACN16094.1| GspD2 [Desulfobacterium autotrophicum HRM2]
          Length = 761

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 30/242 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVL 251
           QV ++VT+AEV  +             SS G   +F  D G   V++G   G      VL
Sbjct: 500 QVLIEVTLAEVTLN-----------DSSSLGVEWTFIKDGGS--VADGLIQGTLGSTNVL 546

Query: 252 -----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASF-------TSGGQHLYKTVS 299
                +   +   L AL     +  L+ P++ A   + A             ++ Y T  
Sbjct: 547 QYNFGNTQKWAATLTALASKGDVNILSSPSVLASDNKEAKIDISTEVPVVTTEYKYGTDG 606

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKAD 357
               AT++   + GV+L  TP +   G + + I  EVSE    V AG  + PS+  R   
Sbjct: 607 DDMLATNIQYRNTGVILTVTPHINERGLVSMEINQEVSEQADAVLAGGQEYPSFYKRSVQ 666

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TT+ +    TI + GL++   +    GIPLL+++P    LF  +    E+ E+ I  TP 
Sbjct: 667 TTLTVNDNQTIAIGGLMRKKEEDSSAGIPLLNQLPFFKYLFGKTAGGNEKNELIILITPR 726

Query: 418 LV 419
           +V
Sbjct: 727 VV 728


>gi|330938634|gb|EGH42200.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 554

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 32/256 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   + ++SG  K  ++  D  G               F
Sbjct: 301 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAGNTSGNLTSNVPF 360

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 361 VDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 420

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 421 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 474

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 475 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 534

Query: 409 EIFIAATPFLVKPVAM 424
           E+ +  TP ++   A+
Sbjct: 535 ELLVFLTPRIMNNQAI 550


>gi|251787909|ref|YP_003002630.1| putative outer membrane porin HofQ [Dickeya zeae Ech1591]
 gi|247536530|gb|ACT05151.1| type IV pilus secretin PilQ [Dickeya zeae Ech1591]
          Length = 433

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 7/166 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +  + +  T
Sbjct: 262 LMALEQENEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 321

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +L  G+I L +    + P   +     G++ +   ++  T V +  G TIVL G+ + 
Sbjct: 322 PRILHGGQITLNLLISQNMPGRAIKQGENGEILAIDKQEIQTQVTVQDGETIVLGGIFQQ 381

Query: 377 DIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAATPFLVK 420
              Q +  +P L  +P +GA FR  N +  R E  IFI  TP L++
Sbjct: 382 QKNQAERQVPGLGALPGIGAWFRSGNRQHTRRELVIFI--TPTLIQ 425


>gi|194364334|ref|YP_002026944.1| general secretion pathway protein D [Stenotrophomonas maltophilia
           R551-3]
 gi|194347138|gb|ACF50261.1| general secretion pathway protein D [Stenotrophomonas maltophilia
           R551-3]
          Length = 733

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 128/285 (44%), Gaps = 29/285 (10%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--- 216
           AVE + T L +S    +   S ++V+  L++    QV ++  +AEV  +   + G     
Sbjct: 425 AVEETNTLLVRSTPQAW--RSIREVIEKLDVM-PLQVHIEAQVAEVALEGDLKYGVNWFF 481

Query: 217 ------HSITGSSSGPSKSFAADFGGKFVS-EGGDFSVKGVLDRFSFET---VLHALERA 266
                  ++TG+ +G +   AA  GG + S  G     +G+   F+      V+ AL++ 
Sbjct: 482 DNAVAGRALTGALAGVTLPAAA--GGSWSSLAGAATGGEGLGWAFTGHNGAAVVSALDKV 539

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPT 321
           T +R L  P++   +   A+   G +    T + +TG      +SV   D GV+L   P 
Sbjct: 540 TDVRLLQTPSVFVRNNAEATLNVGDKVPINTTTVNTGIGTSSYSSVQYIDTGVILKVRPR 599

Query: 322 VLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           V   G + L I  EVS      E          P    +K  T   + SG TI+LAGL+ 
Sbjct: 600 VTRDGTVFLDIVQEVSSASNVPENCNPQERNCNPRISTKKLSTEAAVQSGDTIMLAGLIT 659

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           D       GIP LS+IP++GALF         +E+ +  TP +V+
Sbjct: 660 DTGTDGSSGIPGLSRIPVVGALFGQKSRTSRRSEVIVLLTPSIVR 704


>gi|157959974|ref|YP_001500008.1| general secretion pathway protein D [Shewanella pealeana ATCC
           700345]
 gi|157844974|gb|ABV85473.1| general secretion pathway protein D [Shewanella pealeana ATCC
           700345]
          Length = 710

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S ++         +V  
Sbjct: 443 FAALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVER 502

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGT 367
            + GV L   P +     + L I+ EVS    G+N   G   ++  R+  TTV   SG  
Sbjct: 503 KEVGVKLKVVPQINEGSSVKLTIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQI 558

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +VL GL+K+++Q+  + +P L  IPI+G LF++S   +++T + +      +KP  +RD
Sbjct: 559 VVLGGLIKEEVQESVQKVPFLGDIPIIGHLFKSSSSGKKKTNLMV-----FIKPTIIRD 612


>gi|331017211|gb|EGH97267.1| general secretion pathway protein D [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 361

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G         +    +++T  +SV 
Sbjct: 157 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTATNTTLSSVE 216

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS+   G  + D+   P    R   T V   SG
Sbjct: 217 YVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRSVSTQVAAQSG 276

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF NS  +++ TE+ +  TP ++
Sbjct: 277 QTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLITPRVI 330


>gi|182679972|ref|YP_001834118.1| general secretion pathway protein D [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635855|gb|ACB96629.1| general secretion pathway protein D [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 803

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGAT-----SVTTHD 311
           V++AL   T ++ L+ P+L  +  Q A    G Q   L +  +S+  A      SV   D
Sbjct: 612 VINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANPAIVNSVNYKD 671

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            G++L+  P V + G + L I+ ++S           P+   R+  +T+ +P+G T++LA
Sbjct: 672 TGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIAIPNGQTVLLA 731

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           GL+++     + G+P++SKI  L  L  N   +   TE+ +      +KP  +R+
Sbjct: 732 GLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIM-----FIKPQILRN 781


>gi|66043674|ref|YP_233515.1| type II and III secretion system protein:NolW-like:NolW-like
           [Pseudomonas syringae pv. syringae B728a]
 gi|63254381|gb|AAY35477.1| type II and III secretion system protein:NolW-like:NolW-like
           [Pseudomonas syringae pv. syringae B728a]
          Length = 718

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 32/248 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   S   S SG   ++  D  G               F
Sbjct: 465 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAGNTSGNLTPNVPF 524

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 525 VDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 584

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 585 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 638

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 639 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 698

Query: 409 EIFIAATP 416
           E+ +  TP
Sbjct: 699 ELLVFLTP 706


>gi|255322161|ref|ZP_05363307.1| type II and III secretion system protein [Campylobacter showae
           RM3277]
 gi|255300534|gb|EET79805.1| type II and III secretion system protein [Campylobacter showae
           RM3277]
          Length = 481

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 22/186 (11%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSV 307
           F+ + VL+ LE     + ++ P +T ++ Q A  + G    Y+    S       G T++
Sbjct: 274 FNLDGVLNFLETNGRTKVVSSPKITTLNNQQALISVGDNVNYRVQEESQNNNALNGKTTI 333

Query: 308 TTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----------PSYRV 353
           T   Y    G++L+  P V    +I LRI   +S      N  D+          P    
Sbjct: 334 TYKQYSVFIGILLNILPEVSDDNKIMLRINPSLSS--FKYNEDDVRQSTTIREIAPDTIQ 391

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           +K  T V++ SG TIVL GL+     +    +P L  IP+LG  F++++ N   TE+   
Sbjct: 392 KKLSTVVQVNSGDTIVLGGLIAQSKGKENTKVPFLGDIPVLGHAFKSTKDNLRTTELVFI 451

Query: 414 ATPFLV 419
            TP +V
Sbjct: 452 ITPRIV 457


>gi|15595882|ref|NP_249376.1| type II secretion system protein [Pseudomonas aeruginosa PAO1]
 gi|218893357|ref|YP_002442226.1| putative type II secretion system protein [Pseudomonas aeruginosa
           LESB58]
 gi|9946565|gb|AAG04074.1|AE004503_12 probable type II secretion system protein [Pseudomonas aeruginosa
           PAO1]
 gi|218773585|emb|CAW29399.1| probable type II secretion system protein [Pseudomonas aeruginosa
           LESB58]
          Length = 803

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 12/191 (6%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295
           G   + G+      + +  AL+       L+ P L  +  +SAS   G       GQ++ 
Sbjct: 547 GTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVT 606

Query: 296 KTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352
               +S     ++   D G+ L+  P +   G + L +  EVS  +      AG + + R
Sbjct: 607 DGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKR 666

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
               DT++ L  G  +VL GLL+D++Q   +G+P LS +P +G+LFR  + +R +T + +
Sbjct: 667 A--IDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMV 724

Query: 413 AATPFLVKPVA 423
              P++V+  A
Sbjct: 725 FLRPYIVRDAA 735


>gi|293604906|ref|ZP_06687303.1| general secretion pathway protein D [Achromobacter piechaudii ATCC
           43553]
 gi|292816734|gb|EFF75818.1| general secretion pathway protein D [Achromobacter piechaudii ATCC
           43553]
          Length = 791

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 117/279 (41%), Gaps = 50/279 (17%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFS---- 246
           QV ++  I EV      + G Q  +TG+    S+G S     + GG  ++  G  S    
Sbjct: 426 QVLVESLIVEVSEQAAAEFGIQW-MTGAGNINSNGTSFIGGTNLGGSGITGNGPTSIDAL 484

Query: 247 --------VKGVLDRFSFETV-----LHALERATAIRTLAEPTLTAISGQSASFTSG--- 290
                   VKG +D    + +       A++       L+ P L  +  QSAS   G   
Sbjct: 485 GSGLSLGVVKGTVDVLGNQVINLGVLARAMQNTGEANILSTPNLLTLDNQSASILVGKTV 544

Query: 291 ----GQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
               GQ++    S S G++    ++   D G+ L+  P +   G + L I  EVS     
Sbjct: 545 PFVTGQYV---TSGSNGSSNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQEVSSIDES 601

Query: 339 ---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
              P  G+          R  DT+V +  G  IVL GLL+D++      +P L  +P++G
Sbjct: 602 RSTPTTGIVTNK------RAIDTSVLIDDGQIIVLGGLLEDNVTLTSNSVPGLGSLPVIG 655

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +LFR     R +T + +   P++V+  A R  S   D Y
Sbjct: 656 SLFRYDTRKRTKTNLMVFLRPYVVRD-ANRSASVTMDRY 693


>gi|296390960|ref|ZP_06880435.1| general secretion pathway protein D [Pseudomonas aeruginosa PAb1]
          Length = 786

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 12/191 (6%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295
           G   + G+      + +  AL+       L+ P L  +  +SAS   G       GQ++ 
Sbjct: 530 GTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVT 589

Query: 296 KTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352
               +S     ++   D G+ L+  P +   G + L +  EVS  +      AG + + R
Sbjct: 590 DGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKR 649

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
               DT++ L  G  +VL GLL+D++Q   +G+P LS +P +G+LFR  + +R +T + +
Sbjct: 650 A--IDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMV 707

Query: 413 AATPFLVKPVA 423
              P++V+  A
Sbjct: 708 FLRPYIVRDAA 718


>gi|162146314|ref|YP_001600773.1| general secretion pathway protein D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209543683|ref|YP_002275912.1| general secretion pathway protein D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161784889|emb|CAP54432.1| putative general secretion pathway protein D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531360|gb|ACI51297.1| general secretion pathway protein D [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 772

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 9/169 (5%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSV----TTHDYGV 314
           + AL+  T +  L+ P L     ++A    G     +  S SST  TS+    T    GV
Sbjct: 554 IDALQNVTTVHVLSSPQLMVQDNRAARLQVGQLVPVQIGSQSSTIGTSIYNQFTYQPTGV 613

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           ++  TP V   G + L +  EVS          NA   P++  R   + V +  G T+ L
Sbjct: 614 IMQVTPHVSEGGLVTLDVSQEVSSVSPTAASTANAASNPTFNDRSVSSRVVVQDGQTVGL 673

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           AGL+ D   ++  GIP L  IP+LG L  N   NR+ TE+ I  TP ++
Sbjct: 674 AGLITDSSSRINSGIPWLKNIPVLGVLAGNQNNNRQRTELLILMTPHVI 722


>gi|311105841|ref|YP_003978694.1| general secretion pathway protein D [Achromobacter xylosoxidans A8]
 gi|310760530|gb|ADP15979.1| general secretion pathway protein D [Achromobacter xylosoxidans A8]
          Length = 790

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 113/261 (43%), Gaps = 41/261 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFS---- 246
           QV ++  I EV      + G Q  +TG+    S G S     + GG  ++  G  +    
Sbjct: 425 QVLVESLIVEVSEAKAAEFGIQW-MTGAGNINSDGTSFIGGTNLGGSGITGKGPTTIDGI 483

Query: 247 --------VKGVLDRFSFETV-----LHALERATAIRTLAEPTLTAISGQSASFTSG--- 290
                   VKG +D    + +       A+E       L+ P L  +  QSAS   G   
Sbjct: 484 GSGLTLGVVKGTVDVLGNKVINLGVLARAMENTGEANILSTPNLLTLDNQSASILVGKTV 543

Query: 291 ----GQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EP 339
               GQ++    S S G+T    ++   D G+ L+  P +   G + L I  EVS   E 
Sbjct: 544 PFVTGQYV---TSGSNGSTNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQEVSSIDES 600

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                 G + + R    DT+V +  G  IVL GLL+D++      +PLL  +P++G+LFR
Sbjct: 601 RSNATTGIVTNKRA--IDTSVLIDDGQIIVLGGLLEDNVTLSTNSVPLLGSLPVIGSLFR 658

Query: 400 NSRFNREETEIFIAATPFLVK 420
                R +T + +   P++V+
Sbjct: 659 YDSRKRTKTNLMVFLRPYVVR 679


>gi|158521417|ref|YP_001529287.1| type II and III secretion system protein [Desulfococcus oleovorans
           Hxd3]
 gi|158510243|gb|ABW67210.1| type II and III secretion system protein [Desulfococcus oleovorans
           Hxd3]
          Length = 538

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 115/258 (44%), Gaps = 34/258 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQ---------HS-ITGSSSGP-----------------S 227
           QV ++  I E  +D  +Q+G Q         HS  TG++ GP                 +
Sbjct: 263 QVLIEAHIVETSKDTARQLGIQWGGVAKDKQHSWFTGATEGPAGQTLFDANGVPVAANPT 322

Query: 228 KSFAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
            ++AA+F     + G     +   L +      L ALE    +  L+ P++T +   +A 
Sbjct: 323 GNWAANFPASLGNTGLSLGYIYQDLGQSLIAAQLTALEEDGKLNILSSPSITTLDNSAAV 382

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA- 345
             SG    ++TV  +    ++      + L  TP ++    + ++I+T   E +   NA 
Sbjct: 383 IESGRDVPFQTVEDNE--VNIEWKKAVLSLAVTPHIIDASTLRVKIKTHKDE-LDWSNAV 439

Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P+   + A+T + L  G T V+ GL K    Q + G+PLL +IPILG  FR++  
Sbjct: 440 LTDGNPTIITKNAETEMILFDGQTTVIGGLNKQSSSQSQFGVPLLGRIPILGFFFRSTSR 499

Query: 404 NREETEIFIAATPFLVKP 421
           + +  E+ I  TP +++P
Sbjct: 500 SNDMEEVLIFITPHILEP 517


>gi|330964738|gb|EGH64998.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 701

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 32/248 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   S   S SG   ++  D  G               F
Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDDNGDEAGNTSGNLTSNVPF 507

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 508 VDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681

Query: 409 EIFIAATP 416
           E+ +  TP
Sbjct: 682 ELLVFLTP 689


>gi|114571311|ref|YP_757991.1| general secretion pathway protein D [Maricaulis maris MCS10]
 gi|114341773|gb|ABI67053.1| general secretion pathway protein D [Maricaulis maris MCS10]
          Length = 686

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 109/237 (45%), Gaps = 16/237 (6%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKF--VSEGGDFSVKGV 250
           QV ++ TIAEVR +     G +      GS+   S  F+    G    V  G +++  G 
Sbjct: 424 QVLIEATIAEVRLEDGLDFGVRWYFENAGSNETSSLQFSDSNTGSTAPVFPGFNYAFSGT 483

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGA---- 304
                    L AL   T +  L+ P++   + Q+A    G +   + +T +S T +    
Sbjct: 484 ----DLTATLSALRSITDVTVLSAPSIMVQNNQTAHLQVGDEVPIVTQTATSVTESNAPI 539

Query: 305 -TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVEL 362
            +SV   + GV+L  TP + + G + L +  EVS       +G D P+ +  +  +TV +
Sbjct: 540 VSSVELRETGVILQVTPRINASGMVVLEVNQEVSSVRPTTTSGIDSPTIQKLEFTSTVSV 599

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            S  TI L GL+++     +   PLL  IP +G LFRN     + +E+ I  TP ++
Sbjct: 600 RSSNTIALGGLIRETTSDNESRTPLLGDIPGVGNLFRNRAMTSQRSELVIFLTPRII 656


>gi|257125412|ref|YP_003163526.1| type II and III secretion system protein [Leptotrichia buccalis
           C-1013-b]
 gi|257049351|gb|ACV38535.1| type II and III secretion system protein [Leptotrichia buccalis
           C-1013-b]
          Length = 400

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 14/229 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGGKFVSEGGDFSVKGVL 251
           ++QV +K TI +   ++ +++G   SI   ++  +K +  A F    VS    FS  G  
Sbjct: 167 KEQVIIKGTIIDTSSNLFERLGIDWSINSDNANATKDNLVAKFLNGEVSIASIFSKGGRF 226

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVT 308
               F    + L+    IR  A PTL  +  +        + L    KT    T      
Sbjct: 227 LGIDF----NLLKENGDIRIEAMPTLMIMENEEGELKVTEEVLVGEKKTTKKDTEYVEPI 282

Query: 309 THDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELP 363
             + G+V    P +       +I L+I TE+S   +    NA      +  +  TT+ L 
Sbjct: 283 FSEAGIVFKINPEIRKINGIKKILLKIDTEISNFKLTSSYNASSGAKQK-NQTKTTITLN 341

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           +GG+  + GL +D  ++    +P+LSKIPI+G LF+  R NRE  +I+I
Sbjct: 342 NGGSTFIGGLKQDVSKETIRRVPVLSKIPIVGPLFKYRRTNRELRDIYI 390


>gi|299066099|emb|CBJ37280.1| putative type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum CMR15]
          Length = 792

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 22/243 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           E +V L+V + EV RD L  +G     + S   PS   AA +G          +  G+  
Sbjct: 338 EPEVMLEVEVLEVSRDRLTDLGIDWPNSFSLGTPSS--AATWGALHHLTVNQLTASGLSA 395

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATS 306
             +F+         T    LA P +   + + A    G +    + SS         + S
Sbjct: 396 TANFKLT------DTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSGPVYSQS 449

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------YRV--RKADT 358
           +   D G+ L   P V     +G+++  EVS     +++ +  +      Y++  R A T
Sbjct: 450 IQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNSQTGLSSLAYQIGTRNAST 509

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           T+ L  G T +L GL++D+ +     IP L ++P+LG LF N   + ++TEI +  TP +
Sbjct: 510 TLRLKDGETQILGGLIQDEDRDAANKIPGLGQLPVLGRLFSNHNGDHKKTEIVLQITPHI 569

Query: 419 VKP 421
           V+P
Sbjct: 570 VRP 572


>gi|329894543|ref|ZP_08270351.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC3088]
 gi|328922981|gb|EGG30307.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC3088]
          Length = 691

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 13/204 (6%)

Query: 219 ITGSSSGPSKSFAADFGGKFVSE-GGDFSVKGVLDRFSFETV-LHALERATAIRTLAEPT 276
           + GS S P  S   D G   V+E  G F+V G   +  F T  L ALE       +++P 
Sbjct: 486 LPGSVSLPG-SLLVDLG---VAEPAGSFAV-GFTSKDVFLTAELSALEAVGKGEVVSQPK 540

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI---Q 333
           +     Q AS  SG +  Y+  SS+ GAT+    +  + L  TP +    RI L +   Q
Sbjct: 541 VITGDKQKASIKSGTEVPYQE-SSAGGATATQFKEAVLQLDVTPNITPDDRILLDLVINQ 599

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIPLLSKIP 392
             + + V   N G +P+    +  T V + +G TIVL G+ + +D++++ + +P+L  IP
Sbjct: 600 DSIGDLVPSGNGGSIPTIDTTELTTQVLVGNGETIVLGGVFRTEDLEKVSK-VPVLGDIP 658

Query: 393 ILGALFRNSRFNREETEIFIAATP 416
           I+G  F++S  +R +TE  I  TP
Sbjct: 659 IMGQFFKSSSTSRTKTETLIFITP 682


>gi|167626079|ref|YP_001676373.1| general secretion pathway protein D [Shewanella halifaxensis
           HAW-EB4]
 gi|167356101|gb|ABZ78714.1| general secretion pathway protein D [Shewanella halifaxensis
           HAW-EB4]
          Length = 720

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S ++         +V  
Sbjct: 443 FGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVER 502

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGT 367
            + GV L   P V     + L I+ EVS    G+N   G   ++  R+  TTV   SG  
Sbjct: 503 KEVGVKLKVVPQVNEGNAVKLTIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQI 558

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +VL GL+K+++Q+  + +P L  IPI+G LF++S   +++T + +      +KP  +RD
Sbjct: 559 VVLGGLIKEEVQESVQKVPFLGDIPIIGHLFKSSSSGKKKTNLMV-----FIKPTIIRD 612


>gi|330971735|gb|EGH71801.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 701

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 32/248 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   S   S SG   ++  D  G               F
Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAGNTGSSVTSNVPF 507

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 508 VDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681

Query: 409 EIFIAATP 416
           E+ +  TP
Sbjct: 682 ELLVFLTP 689


>gi|323498120|ref|ZP_08103124.1| type IV pilus biogenesis protein PilQ [Vibrio sinaloensis DSM
           21326]
 gi|323316831|gb|EGA69838.1| type IV pilus biogenesis protein PilQ [Vibrio sinaloensis DSM
           21326]
          Length = 561

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +R +    ++ P L   + + A    G +  Y   SSS+GATSVT     + L  TP + 
Sbjct: 403 QRESKAEVISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQIT 461

Query: 324 SPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  +   
Sbjct: 462 PDNRLVLDLSVTQDRPGDVVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHSVTDT 521

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +PLL  +P+LGALFR S     ++E+ I  TP +V
Sbjct: 522 VDKVPLLGDLPVLGALFRRSYQQMGKSELLIFVTPKVV 559


>gi|77361610|ref|YP_341185.1| mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus
           type IV) [Pseudoalteromonas haloplanktis TAC125]
 gi|76876521|emb|CAI87743.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshL (pilus type IV) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 552

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 22/211 (10%)

Query: 231 AADFGGKF-VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           A +FG     S GG  S+   ++R  F  V++ LE    ++ L+ P +TA + Q A    
Sbjct: 324 AGNFGNNLSASLGGVSSL--TIERGDFNGVINLLETQGDVQMLSNPRVTATNNQKAVIKV 381

Query: 290 GGQHLYKT----------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEV 336
           G    + T           ++++    +T    G+ L  TP +   G + L +    TE 
Sbjct: 382 GQDEYFVTNVSSTTVTGTSTTTSPEIDLTPFFSGIALDVTPQIDKYGSVILHVHPSVTET 441

Query: 337 SEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            E +  +   D      +    +R++DT +   SG  +V+ GL++   Q  +   P+L  
Sbjct: 442 QEQLKVITLDDQRFELPLAQSNIRESDTVIRAQSGEIVVIGGLMQTSTQDEETKTPILGD 501

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKP 421
           IPI G LF+N R  +E+ E+ I   P +V P
Sbjct: 502 IPIFGNLFKNIRKRQEKKELIILIRPTVVMP 532


>gi|332160534|ref|YP_004297111.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664764|gb|ADZ41408.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 648

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 14/182 (7%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
           +++ +  AL   +    LA P++  +    A F  G Q +    S+ T AT     S++ 
Sbjct: 416 NWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 474

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366
              GV+L   P +     + L I+ EVS       VNA ++ S +  R  +  V + SG 
Sbjct: 475 QSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSVFNKRVVNNAVLVKSGE 534

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T+V+ GLL   I ++   +PLL  IP +G LFR S+   E++ + +      ++P  +R+
Sbjct: 535 TVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQSKEKIEKSNLIL-----FIRPTILRE 589

Query: 427 LS 428
            S
Sbjct: 590 TS 591


>gi|283480139|emb|CAY76055.1| Protein transport protein hofQ precursor [Erwinia pyrifoliae DSM
           12163]
          Length = 414

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 7/233 (3%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250
           +Q+ L   I  +  + L+++G    ++G +        +       + G    V G    
Sbjct: 181 EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLRVDLAT-GRPAGVVGFTLA 239

Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            LD    +  L ALE       +A P L     Q+AS   G +  Y+  + ++G+T++  
Sbjct: 240 KLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTEIPYEVSTGNSGSTTMEF 299

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGT 367
            +  + +  TP V + GRI L++    + P   + +G+     + K   DT V L  G T
Sbjct: 300 KEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLTIDKQEIDTQVMLKDGQT 359

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + L G+ +         +P L  IP+LG LFR+    ++  E+ I  TP L++
Sbjct: 360 LALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRRELVIFITPRLIR 412


>gi|310765643|gb|ADP10593.1| Protein transport protein hofQ precursor [Erwinia sp. Ejp617]
          Length = 414

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 7/233 (3%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250
           +Q+ L   I  +  + L+++G    ++G +        +       + G    V G    
Sbjct: 181 EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLRVDLAT-GRPAGVVGFTLA 239

Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            LD    +  L ALE       +A P L     Q+AS   G +  Y+  + ++G+T++  
Sbjct: 240 KLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTEIPYEVSTGNSGSTTMEF 299

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGT 367
            +  + +  TP V + GRI L++    + P   + +G+     + K   DT V L  G T
Sbjct: 300 KEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLTIDKQEIDTQVMLKDGQT 359

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + L G+ +         +P L  IP+LG LFR+    ++  E+ I  TP L++
Sbjct: 360 LALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRRELVIFITPRLIR 412


>gi|114798909|ref|YP_761208.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
 gi|114739083|gb|ABI77208.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
          Length = 694

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 16/173 (9%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGA---TSVTTHD 311
           V++AL   + +  ++ P +  ++ ++A    G Q    T S    S  GA    S T  D
Sbjct: 500 VINALAATSDVEIVSSPRMLVLNNETARLQVGDQVPIITQSAVSVSDPGAPVVNSTTYRD 559

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-----DMPSYRVRKADTTVELPSGG 366
            GV+L  TP +    R G  ++ ++S+ V GV+       D P+   R   + + +P G 
Sbjct: 560 TGVILTVTPRI----RAGGMVEVDISQEVSGVSETTTSSIDSPTISQRSIQSVLAVPDGS 615

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           T VL GL+       + GIP+L   P+LGA FR++  +   TE+ +   P +V
Sbjct: 616 TAVLGGLMSSTRSYSRTGIPILKDTPVLGAAFRSTNQSERRTELIVLIEPTVV 668


>gi|182678562|ref|YP_001832708.1| general secretion pathway protein D [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634445|gb|ACB95219.1| general secretion pathway protein D [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 801

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGAT-----SVTTHD 311
           V++AL   T ++ L+ P+L  +  Q A    G Q   L +  +S+  A      SV   D
Sbjct: 610 VINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANPAIVNSVDYKD 669

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            G++L+  P V + G + L I+ ++S           P+   R+  +T+ +P+G T++LA
Sbjct: 670 TGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIAIPNGQTVLLA 729

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           GL+++     + G+P++SKI  L  L  N   +   TE+ +      +KP  +R+
Sbjct: 730 GLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIM-----FIKPQILRN 779


>gi|94267441|ref|ZP_01290880.1| type II and III secretion system protein:Secretin/TonB, short-like
           [delta proteobacterium MLMS-1]
 gi|93452009|gb|EAT02711.1| type II and III secretion system protein:Secretin/TonB, short-like
           [delta proteobacterium MLMS-1]
          Length = 555

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 22/198 (11%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSS 300
           GG F++    DR +F   +  L+    +  L+ P +   + Q A    G    + T VS 
Sbjct: 333 GGVFTMAA--DRSNFHAFIELLKTQGDVHVLSSPRVATTNNQKALIKVGNDEYFVTDVSF 390

Query: 301 STGATSVTTHDY----------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AG 346
           ST  T      Y          G+ L  TPT+     + L I+  VS+          AG
Sbjct: 391 STRTTGTDDTIYPDLELTPFFSGIALDVTPTITDGNEVILHIRPSVSQVRDQTKSFTVAG 450

Query: 347 DMPSY-----RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
              S      R+R++D+ V   SG  I++ GL++D  ++ + G+P L  +P++G LFR  
Sbjct: 451 QTQSLPLALSRMRESDSIVRARSGQVIIIGGLMEDSWREQRAGLPGLGDLPLVGNLFRQQ 510

Query: 402 RFNREETEIFIAATPFLV 419
           R+++ +TE+ I   P +V
Sbjct: 511 RWSQRKTELVILLRPVVV 528


>gi|197117672|ref|YP_002138099.1| type II secretion system secretin lipoprotein PulQ [Geobacter
           bemidjiensis Bem]
 gi|197087032|gb|ACH38303.1| type II secretion system secretin lipoprotein PulQ [Geobacter
           bemidjiensis Bem]
          Length = 868

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 19/186 (10%)

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPG 326
            TL+ P +   + + A F  G +    T SS +G   + +V   D GV ++  PT+    
Sbjct: 427 ETLSNPKIRVKNREKAKFNVGTRVPITTTSSPSGGGVSVNVQYVDVGVKVNAEPTIQLNN 486

Query: 327 RIGLRIQTEVS----EPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            + +++  EVS    E  IG + A  + +   R  DT + L  G T ++ GL++      
Sbjct: 487 EVAIKLGLEVSSILNEKTIGTDQATTVVTIGTRNLDTVLSLKDGETSIIGGLIQKTQTDS 546

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           K  + LL  IPILG LF N+   +++TE+ +A TP +V+ V + D           +D  
Sbjct: 547 KSKVFLLGDIPILGPLFSNTSDKKDKTELLLAITPRIVRGVTVPD-----------NDVA 595

Query: 442 AFFFNR 447
           AF+  R
Sbjct: 596 AFWSGR 601


>gi|152986567|ref|YP_001350166.1| putative type II secretion system protein [Pseudomonas aeruginosa
           PA7]
 gi|150961725|gb|ABR83750.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
          Length = 803

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 20/195 (10%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295
           G   + G+      + +  AL+       L+ P L  +  +SAS   G       GQ++ 
Sbjct: 547 GTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVT 606

Query: 296 KTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDM 348
               +S     ++   D G+ L+  P +   G + L +  EVS        V GV     
Sbjct: 607 DGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVSSVDERASTVAGVVTNK- 665

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R  DT++ L  G  +VL GLL+D++Q   +G+P LS +P +G+LFR  + +R +T
Sbjct: 666 -----RAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKT 720

Query: 409 EIFIAATPFLVKPVA 423
            + +   P++V+  A
Sbjct: 721 NLMVFLRPYIVRDAA 735


>gi|109896501|ref|YP_659756.1| pilus (MSHA type) biogenesis protein MshL [Pseudoalteromonas
           atlantica T6c]
 gi|109698782|gb|ABG38702.1| pilus (MSHA type) biogenesis protein MshL [Pseudoalteromonas
           atlantica T6c]
          Length = 550

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 39/235 (16%)

Query: 215 FQHSITGSSSGPSKSFAADFGG----KFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
           FQ S T  S G   + +A  GG     FV++  DFS            VL+ L+    ++
Sbjct: 314 FQFSTTAGSLG--DAISASLGGITSLSFVNK--DFS-----------GVLNLLQTQGNVQ 358

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFT 319
            L+ P +TAI+ Q A    G    + T  SS                +T    G+ L  T
Sbjct: 359 VLSSPRVTAINNQKAVIKVGDDEYFVTDVSSQSTVTAATSSTTPNIELTPFFSGIALDVT 418

Query: 320 PTVLSPGRIGLR-----IQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVL 370
           P + + G + L      I+TE  E V+ +N       + +  +R++DT +   SG  +V+
Sbjct: 419 PQIDAQGGVLLHVHPSVIETEEQEKVVTLNEEQFVLPLAASNIRESDTIIHARSGEIVVI 478

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            GL++  I + +   PLL  IP+LG LF+N +    + E+ I   P +V     R
Sbjct: 479 GGLMQSIISETESKTPLLGDIPLLGNLFKNRQETETKKELVILLRPTVVGADTWR 533


>gi|28870471|ref|NP_793090.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853718|gb|AAO56785.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 763

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G         +    +++T  +SV 
Sbjct: 559 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTATNTTLSSVE 618

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS+   G  + D+   P    R   T V   SG
Sbjct: 619 YVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRSVSTQVAAQSG 678

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF NS  +++ TE+ +  TP ++
Sbjct: 679 QTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLITPRVI 732


>gi|330958318|gb|EGH58578.1| general secretion pathway protein D [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 784

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 12/188 (6%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G  ++ G+ +    + +  AL+       L+ P L  +  ++AS   G    + T S  T
Sbjct: 532 GAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVT 591

Query: 303 GA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352
           G          +V   + G+ L+  P +   G + L I  EVS  +    + AG + + R
Sbjct: 592 GGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSSVDQRASLEAGTVTNKR 651

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
               DT++ L  G  +VL GLL+D   Q    +P LS IP+LG LFRN   +  +T + +
Sbjct: 652 A--IDTSILLDDGQIMVLGGLLQDGYNQSNNAVPWLSNIPLLGVLFRNEARSTSKTNLMV 709

Query: 413 AATPFLVK 420
              P++++
Sbjct: 710 FLRPYIIR 717


>gi|110833294|ref|YP_692153.1| general (type II) secretion pathway protein D [Alcanivorax
           borkumensis SK2]
 gi|110646405|emb|CAL15881.1| general (type II) secretion pathway protein D [Alcanivorax
           borkumensis SK2]
          Length = 710

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 35/255 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------ 242
           Q+ ++  I E+  +  K +GFQ+    +  G     A +FGG  +S              
Sbjct: 365 QILIEAAIVEISGEQGKNLGFQYVGGSNEDGVG---AVNFGGNGLSVNSVVQALASDDPS 421

Query: 243 ----GDFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
               GD    G+ +  S     +  ++ AL  ++ +  L+ P++  +  + AS   G   
Sbjct: 422 GLSLGDGITAGLGETDSDGDLKWGALIQALSTSSDVNLLSTPSILTLDNEEASIIVGENV 481

Query: 294 LYKT-VSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
            + T  S++TG+      T++   D G+ L  TP V   G   +R++ E     +  +AG
Sbjct: 482 PFVTGQSTNTGSGVSNPFTTIQREDVGLTLKVTPHV--AGLSTIRLELEQESSAVKDSAG 539

Query: 347 DMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           D        RK  +TV      TI L GL+KDDI+     +P L  IP+LG LFR++  +
Sbjct: 540 DAVDIVTTTRKLQSTVLADDAETIALGGLIKDDIRVTVRKVPFLGDIPVLGFLFRSTSKD 599

Query: 405 REETEIFIAATPFLV 419
           R ++ + +   P ++
Sbjct: 600 RVKSNLMVFLKPTIL 614


>gi|90416464|ref|ZP_01224395.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2207]
 gi|90331663|gb|EAS46891.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2207]
          Length = 754

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 6/196 (3%)

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G   S A D G    +  G FS+  + D F  +  L ALE       +++P +     Q 
Sbjct: 557 GLGDSLAVDLG--VDNPTGSFSLGYLTDNFLIDLELSALESDGFGEIVSQPKVLTGDKQQ 614

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV- 343
           A   SG +  Y+  +SS GATS+   +  + L  TP +    RI + +   VS+  +G  
Sbjct: 615 AVIKSGTEIAYQKATSS-GATSIEFKEAVLQLEVTPQITPDNRIIMDLL--VSQDSVGAF 671

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                PS  + + +T   + +G T+VL G+ + +     + +PLL  +P LG LFRN   
Sbjct: 672 TPTGEPSIDITQIETQALVGNGQTLVLEGIFQTEEVNGTDKVPLLGDLPFLGKLFRNDLR 731

Query: 404 NREETEIFIAATPFLV 419
           N E+ EI    TP ++
Sbjct: 732 NIEKREILSFITPKII 747


>gi|325275757|ref|ZP_08141634.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51]
 gi|324099108|gb|EGB97077.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51]
          Length = 310

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 125/280 (44%), Gaps = 33/280 (11%)

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV-ILIGHDGKQMLNLDILIER 118
           L++PV ++ V V +P  ADV     R + +    VGQ N  +++        +  ++  R
Sbjct: 49  LRLPVAIERVAVGEPKVADVQASGERGVVI--TAVGQGNTSLMMWTACTPSPHKAMVFVR 106

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
             A  +M    F+   + +            +   +Q   R VE+  +   ++G   +  
Sbjct: 107 GRASADMAQDSFLPSQDTQ------------LPSQVQADIRFVEVRRSKYKEAGARLFFK 154

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            S+    +L+   G    T+  T+  VR D          + G+ +G +    AD     
Sbjct: 155 GSNN---SLIGSPG----TVPNTV--VRPDY---------VPGAQTGENPIAYADVRPGI 196

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
             +   F++        F  +++ALE +    TLA P+LT +SGQ+ASF +GG+      
Sbjct: 197 PLDNSVFNIVWGGGSSRFLAMINALENSGFAYTLARPSLTVLSGQTASFLAGGEIPIPVP 256

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           S+ +   S+   ++GV L  TPTV+S GRI L++  EVSE
Sbjct: 257 SAGSDNVSIEYKEFGVRLALTPTVISQGRITLKVAPEVSE 296


>gi|289549028|ref|YP_003474016.1| general secretion pathway protein D [Thermocrinis albus DSM 14484]
 gi|289182645|gb|ADC89889.1| general secretion pathway protein D [Thermocrinis albus DSM 14484]
          Length = 637

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 14/190 (7%)

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTHDY---GVVLHF 318
           LE+ T    L+ P L  +  Q A    G    + + V        V T+DY   G+ L  
Sbjct: 445 LEKGTGFNLLSNPKLLTLDNQPAEIKVGQVVPFASGVKFDINGQPVITYDYKEVGLDLRI 504

Query: 319 TPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           TP+V S   + L I  +V E      P IG  +  +P    R+ ++ V + +G TI++ G
Sbjct: 505 TPSV-SEKNLRLSISLQVQEIIDFLRPQIGTLSYAVPVTSNRQVNSEVVVENGQTIIIGG 563

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR-PD 431
           L+     +  EG+P L  +P+LG LF+      ++  +FI  TP++++  +  +LSR   
Sbjct: 564 LINTRALRSTEGVPGLQDVPVLGWLFKRKTTQEDKVSLFIFITPYVIE--SPEELSRITQ 621

Query: 432 DHYSVEDDAK 441
           +H  + D+ +
Sbjct: 622 EHQKLADELR 631


>gi|325275672|ref|ZP_08141565.1| type IV pilus secretin PilQ [Pseudomonas sp. TJI-51]
 gi|324099192|gb|EGB97145.1| type IV pilus secretin PilQ [Pseudomonas sp. TJI-51]
          Length = 418

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 9/226 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           QV ++  I E   D  K +G +    + G +  P KS   D G   V   G     G+L 
Sbjct: 186 QVAIEARIVEANVDYEKALGVRWGSPLYGDNPLPGKSLFVDLG---VERAGSSIGLGLLR 242

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                +  L A+E++     +++P +     ++A    G +  Y+  + S GATSV+  +
Sbjct: 243 GDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETTKS-GATSVSFRE 301

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVL 370
             + L  TP +    ++ + ++    EP   VNA  ++P  R  + +  V +  G TIV+
Sbjct: 302 ASLSLEVTPQITPDNKVIMAVRVTKDEPDY-VNALNNVPPIRKNEVNAKVRVADGETIVI 360

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            G+       + + +P L  +P +G LFR      +++E+ +  TP
Sbjct: 361 GGVYSTSQNNVVDKVPFLGDLPYVGRLFRRDALQEKKSELLVFLTP 406


>gi|213970091|ref|ZP_03398223.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tomato T1]
 gi|301381448|ref|ZP_07229866.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061436|ref|ZP_07252977.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato K40]
 gi|302133002|ref|ZP_07258992.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213925195|gb|EEB58758.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tomato T1]
          Length = 775

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G         +    +++T  +SV 
Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTATNTTLSSVE 630

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS+   G  + D+   P    R   T V   SG
Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRSVSTQVAAQSG 690

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF NS  +++ TE+ +  TP ++
Sbjct: 691 QTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLITPRVI 744


>gi|167036119|ref|YP_001671350.1| type IV pilus secretin PilQ [Pseudomonas putida GB-1]
 gi|166862607|gb|ABZ01015.1| type IV pilus secretin PilQ [Pseudomonas putida GB-1]
          Length = 420

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 7/225 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           QV ++  I E   D  K +G +    + G+   P K    D G +    GG   +  +  
Sbjct: 188 QVAIEARIVEANVDYEKSLGVRWGGPLYGAQLRPGKELFVDLGVE--RAGGSIGLGLLRG 245

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
               +  L A+E++     +++P +     ++A    G +  Y+  S S GATSV+  + 
Sbjct: 246 DVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQS-GATSVSFREA 304

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371
            + L  TP +    ++ + ++    EP   VNA  ++P  R  + +  V +  G TIV+ 
Sbjct: 305 SLSLEVTPQITPDNKVIMTVRVTKDEPDY-VNALNNVPPIRKNEVNAKVRVADGETIVIG 363

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           G+       + + +P    +P +G LFR      +++E+ +  TP
Sbjct: 364 GVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 408


>gi|149377297|ref|ZP_01895043.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter algicola
           DG893]
 gi|149358394|gb|EDM46870.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter algicola
           DG893]
          Length = 694

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 3/176 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F+V    D F  +  L ALE       +++P +     Q+A   SG +  Y+  SSS GA
Sbjct: 517 FAVGWGSDDFLVDLELSALESDGQAEVVSQPRVVTADRQTAKIKSGEEIPYQEASSS-GA 575

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           TSV+  +  + L  TP +    +I + +   V++   G     +P+    +  T V + +
Sbjct: 576 TSVSFKEAALSLEVTPQITPDDKIIMDLV--VNQDSRGEVTAGIPAINTNEVTTQVLVGN 633

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T+VL G+ + ++       P L  IP LG LF+ +    E +E+ I  TP ++K
Sbjct: 634 GETVVLGGIFQSEVATTTTKTPFLGDIPYLGRLFKRTEHIDERSELLIFITPKIIK 689


>gi|259910041|ref|YP_002650397.1| putative outer membrane porin HofQ [Erwinia pyrifoliae Ep1/96]
 gi|224965663|emb|CAX57195.1| outer membrane porin [Erwinia pyrifoliae Ep1/96]
          Length = 406

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 7/233 (3%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250
           +Q+ L   I  +  + L+++G    ++G +        +       + G    V G    
Sbjct: 173 EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLRVDLAT-GRPAGVVGFTLA 231

Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            LD    +  L ALE       +A P L     Q+AS   G +  Y+  + ++G+T++  
Sbjct: 232 KLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTEIPYEVSTGNSGSTTMEF 291

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGT 367
            +  + +  TP V + GRI L++    + P   + +G+     + K   DT V L  G T
Sbjct: 292 KEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLTIDKQEIDTQVMLKDGQT 351

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + L G+ +         +P L  IP+LG LFR+    ++  E+ I  TP L++
Sbjct: 352 LALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRRELVIFITPRLIR 404


>gi|302189475|ref|ZP_07266148.1| type II and III secretion system protein:NolW-like:NolW-like
           [Pseudomonas syringae pv. syringae 642]
          Length = 701

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 14/212 (6%)

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L   G +   TG+S GP+  F  D G    + G    +  V +    +  L A+E+    
Sbjct: 487 LDNRGDEAGNTGNSLGPNIPFV-DLGAADATTG--IGLGFVTNNTLLDLELSAMEKTGNG 543

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI 
Sbjct: 544 EIVSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRII 602

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + ++    EP     V+GV     P  +  + +  V +  G TIV+ G+  +   ++ + 
Sbjct: 603 MEVKVTKDEPDYLNAVLGV-----PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDK 657

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +P L  +P LG LFR    +  ++E+ +  TP
Sbjct: 658 VPFLGDVPYLGRLFRRDVVSESKSELLVFLTP 689


>gi|223040615|ref|ZP_03610885.1| type II and III secretion system protein [Campylobacter rectus
           RM3267]
 gi|222878073|gb|EEF13184.1| type II and III secretion system protein [Campylobacter rectus
           RM3267]
          Length = 513

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 22/186 (11%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSV 307
           F+ + VL+ LE     + ++ P +T ++ Q A  + G    Y+    S       G T++
Sbjct: 306 FNLDGVLNFLETNGKTKVISSPKITTLNNQQALISVGDNVNYRVQEESQNNNSLNGKTTI 365

Query: 308 TTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----------PSYRV 353
           T   Y    G++L+  P V    +I LRI   +S      N  D+          P    
Sbjct: 366 TYKQYSVFIGILLNILPEVSDDNKIMLRINPSLSS--FKYNEDDVRQSTKIREIAPDTIQ 423

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           +K  T V++ SG TIVL GL+     +    +P L  IP+ G  F++++ N   TE+   
Sbjct: 424 KKLSTVVQVNSGDTIVLGGLIAQSKGKENTKVPFLGDIPVFGNAFKSTKDNIRTTELVFI 483

Query: 414 ATPFLV 419
            TP +V
Sbjct: 484 ITPRIV 489


>gi|167834842|ref|ZP_02461725.1| general secretion pathway protein D [Burkholderia thailandensis
           MSMB43]
          Length = 749

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 102/249 (40%), Gaps = 27/249 (10%)

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLA 273
           +SI   ++G   S  A       S     +V  + + F  +    +L      +    L+
Sbjct: 444 NSIINLTAGNGTSTGAGVAANLASLNQGLNVGWLHNMFGVQGLGALLQYFAGVSDANVLS 503

Query: 274 EPTLTAISGQSASFTSGGQ-----HLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSP 325
            P L  +  + A    G         Y  ++S T   +  T+D    G+ LH  P +   
Sbjct: 504 TPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTNNAFNTYDRRDVGLTLHVKPQITDG 563

Query: 326 GRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           G + L++ TE S       NA   PS+  R   +T+   +G  IVL GL++D  Q     
Sbjct: 564 GILKLQLYTEDSAVETSTQNAVTGPSFTKRSIQSTILADNGEIIVLGGLMQDSYQVANSK 623

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +PLL  IP LG LFR+    R++T + +      ++PV + D           + A+A  
Sbjct: 624 VPLLGDIPWLGQLFRSESKQRKKTNLMV-----FLRPVIIND----------RETAQAVT 668

Query: 445 FNRVNKIYG 453
            NR + I G
Sbjct: 669 ANRYDYIQG 677


>gi|89075297|ref|ZP_01161724.1| MSHA biogenesis protein MshL [Photobacterium sp. SKA34]
 gi|89048978|gb|EAR54546.1| MSHA biogenesis protein MshL [Photobacterium sp. SKA34]
          Length = 541

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 34/259 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI-----TGSSSGPSKSFAADFGGKFVSE--GGDFSV 247
           QV L+  I EV  D   Q G   S       G ++G +    A  GG  +SE  GG  ++
Sbjct: 268 QVVLEAKIMEVTLDDSYQQGINWSYLTKSGNGITTGTASIVEALPGGNAISELLGGQTNI 327

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305
              L   +F+ V+  L     +  L+ P +TA + Q A    GG   + T  SS+  +  
Sbjct: 328 --TLSDGNFKAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGD 385

Query: 306 --------SVTTHDYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAG---D 347
                   S+T    G+ L  TP +   G + L +       Q E     +G        
Sbjct: 386 NNNVSPDVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVIDVQNEQKTIEVGTEKPMVLP 445

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +    +R++D+ +   +G  +V+ GL+K  I      +PLL  IP +G LFR+    +++
Sbjct: 446 LAKSTIRESDSIIHARTGDVVVIGGLMKSSINDQVSKVPLLGDIPWVGNLFRHINKVKKK 505

Query: 408 TEIFIAATPFLVKPVAMRD 426
           TE+ I     L+KP  + D
Sbjct: 506 TELVI-----LLKPTVVTD 519


>gi|222099578|ref|YP_002534146.1| ComE protein [Thermotoga neapolitana DSM 4359]
 gi|221571968|gb|ACM22780.1| ComE protein [Thermotoga neapolitana DSM 4359]
          Length = 1282

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 2/150 (1%)

Query: 272  LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            LA P +   SG+ A    G +  Y T ++  G   V   + G+ L  TP V S   I L 
Sbjct: 1135 LASPRIVTTSGKEAKILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELD 1194

Query: 332  IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            +  + SEP  G    ++P  R R+A T + + +  TIV+ GL+++     +  +P    +
Sbjct: 1195 LFVKASEP--GNYINEVPGERTREATTHLIVKNNSTIVIGGLIREVTNMSESKLPFFGDL 1252

Query: 392  PILGALFRNSRFNREETEIFIAATPFLVKP 421
            P++G  FR    ++E+ ++ I  T  +V+P
Sbjct: 1253 PVIGQFFRTKSESKEKRDLMIFVTVRVVEP 1282


>gi|95928759|ref|ZP_01311505.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135104|gb|EAT16757.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
          Length = 727

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 4/169 (2%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD    +  L ALE +   + ++ P + A+ G++A    G +  YKT S +   T     
Sbjct: 562 LDTIVLDLQLSALESSGGGKVISSPKVMALDGETARIGQGTEIPYKTTSDNGTTTEFKKA 621

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           +  + L  TP +     I L I    S P  GV   D  +   ++A+T + L +G T V+
Sbjct: 622 E--LALEVTPLINPDNTILLEILATNSSP--GVAYTDGVAINTKEAETKLLLKNGETTVI 677

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G+  ++ Q    G P L  +P +G LF+    + + TE+ I  TP +V
Sbjct: 678 GGIYTENEQNSDSGTPYLKDLPFIGNLFKYKTSSNDRTELLIFLTPHIV 726


>gi|90412971|ref|ZP_01220969.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
           3TCK]
 gi|90325986|gb|EAS42425.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
           3TCK]
          Length = 559

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 109/261 (41%), Gaps = 36/261 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSF-----AADFGGKFVSE--GGDFS 246
           QV L+  I EV      Q G   S IT S  G    F     AA  GG  +S   GG  +
Sbjct: 284 QVVLETKIMEVTLSDGYQQGVNWSNITSSIGGTDIIFGRTGPAALPGGDAISSLLGGQTN 343

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TG 303
           V   +   +FE VL  LE    +  L+ P +TA + Q A    GG   + T  S    +G
Sbjct: 344 V--TISDGNFEAVLSFLETQGDLNVLSSPRVTAANNQKAVIKVGGDQYFVTDISGGEVSG 401

Query: 304 ATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPV-----------IGVNA 345
             S +  D        G+ L  TP +   G + L +   V E V            GV  
Sbjct: 402 DNSTSAPDIELTPFFSGISLDVTPQIDDEGGVLLHVHPTVVEVVNETKDIDLGATFGVYK 461

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +    +R++D+ +   SG  +V+ GL+K  I      +P L  IP LG LFRN    +
Sbjct: 462 LPLAKSSIRESDSVIFARSGDVVVIGGLMKSAINDQVSKVPFLGDIPGLGHLFRNVNKVQ 521

Query: 406 EETEIFIAATPFLVKPVAMRD 426
            +TE+ I     L+KP  + D
Sbjct: 522 SKTELVI-----LLKPTVVDD 537


>gi|326423839|ref|NP_760349.2| pilus (MSHA type) biogenesis protein MshL [Vibrio vulnificus CMCP6]
 gi|319999208|gb|AAO09876.2| pilus (MSHA type) biogenesis protein MshL [Vibrio vulnificus CMCP6]
          Length = 548

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 113/269 (42%), Gaps = 31/269 (11%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++V   L I+ E    QV L+  I EV      Q G   S   +S G S S   +  G  
Sbjct: 256 REVRQFLGISQERMQRQVILEAKILEVTLSDGYQQGINWSNISASIGNSGSIVVNRPGST 315

Query: 239 VSEGGDF--SVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           V  G D   S+ G      +   SFE VL  +     +  L+ P +TA + Q A    G 
Sbjct: 316 VLPGLDAIGSLLGGQTNVTISDGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGN 375

Query: 292 QHLYKT-VSSSTG---------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSE 338
              Y T +SS+ G           ++T    G+ L  TP +   G + L +     EV E
Sbjct: 376 DQYYVTALSSNVGNDDKSKAVPEVTLTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEE 435

Query: 339 PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
               +N G         +    +R++D+ +    G  +V+ GL+K +  +    +P L  
Sbjct: 436 ETKQLNLGGDFQNVTLPLAKSSIRESDSVIRARDGDVVVIGGLMKSNTIERVSKVPFLGD 495

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP LG LFRN+    ++TE+ I   P +V
Sbjct: 496 IPALGHLFRNTSNLTQKTELVILLKPTVV 524


>gi|91791490|ref|YP_561141.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
 gi|91713492|gb|ABE53418.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
          Length = 705

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 17/179 (9%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGAT----SVTT 309
           F  ++ A+   T    LA P++T +  Q ASF  G +   L  + +SS G      +V  
Sbjct: 449 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNANPFQTVER 508

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGT 367
            + GV L  TP +     + L I+ EVS    G+N   G   ++  R+  TTV   SG  
Sbjct: 509 KEVGVKLKVTPQINEGTAVKLTIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQI 564

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +VL GL+ +++Q+  + +P L  IP +G LF++S  ++++  + +      +KP  +RD
Sbjct: 565 VVLGGLINEEVQESIQKVPFLGDIPFIGHLFKSSSSSKKKKNLMV-----FIKPTIIRD 618


>gi|294142779|ref|YP_003558757.1| type IV pilus biogenesis protein PilQ [Shewanella violacea DSS12]
 gi|293329248|dbj|BAJ03979.1| type IV pilus biogenesis protein PilQ [Shewanella violacea DSS12]
          Length = 643

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 104/247 (42%), Gaps = 23/247 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSF--AADFGGKFVSEGGD------ 244
           QV ++  +  V+ ++ + +G Q  IT    + G S S   A    G  +    D      
Sbjct: 394 QVLIEARMVTVKDNVSEDLGIQWGITDQQGTRGTSGSIEGAESIAGGLIPALADRLNVAL 453

Query: 245 ----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                     F V  + D    +  L ALE+      +A P +   S Q A++   G  +
Sbjct: 454 PAPAGAASIAFHVARLADGTILDMELSALEQENKGEIIASPRIMT-SNQKAAYIEQGVQI 512

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYR 352
               SSS+GA +V+     + L  TP +    R+   L I  +    V+    G+  S  
Sbjct: 513 PYVESSSSGAATVSFKKAVLSLRVTPQITPDNRVILDLEITQDSQGEVVATPLGEAVSID 572

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            ++  T V +  G TIVL G+ + ++      +P+L  IP LG LFR++    E  E+ I
Sbjct: 573 TQRIGTQVLVNHGETIVLGGIYQQNLISRVSKVPILGDIPFLGFLFRSTSDKNERQELLI 632

Query: 413 AATPFLV 419
             TP ++
Sbjct: 633 FVTPKII 639


>gi|326796602|ref|YP_004314422.1| general secretion pathway protein D [Marinomonas mediterranea
           MMB-1]
 gi|326547366|gb|ADZ92586.1| general secretion pathway protein D [Marinomonas mediterranea
           MMB-1]
          Length = 623

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 25/214 (11%)

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           P+ S     G    +  GD ++ G+L          A+E  +    L+ P +  +  Q +
Sbjct: 392 PTLSNGITVGAASFNSDGDLNMAGIL---------QAIESNSNSNLLSTPKIMTLDNQKS 442

Query: 286 SFTSGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEP 339
               G    ++T     SSS+   + +  D G+ L  TP + +   + + +    E + P
Sbjct: 443 KILVGETRPFQTGGYSDSSSSAFVTTSREDIGLTLEVTPHINADNEVKMEVNQIVEAASP 502

Query: 340 VIGVNAGDMPSYRV-RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                A  + +    R+ +TTV   +  TIVL GL++D++ ++++ +PLL  IPILGALF
Sbjct: 503 ----EASSLGTITTKREIETTVIAGNRKTIVLGGLIEDNVVEVEQKVPLLGDIPILGALF 558

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           R+  +   +  + +      ++P  +R     +D
Sbjct: 559 RSKSYENNKKNLLV-----FIRPTILRSAVEAED 587


>gi|242281104|ref|YP_002993233.1| general secretion pathway protein D [Desulfovibrio salexigens DSM
           2638]
 gi|242123998|gb|ACS81694.1| general secretion pathway protein D [Desulfovibrio salexigens DSM
           2638]
          Length = 671

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 255 SFETV---LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-GATSVTTH 310
           SF T+   ++  + AT    ++ P +  +    A    G    YKT  SST G   V+T+
Sbjct: 447 SFPTIGALVNFTKSATDFNLISAPQIMTLDNAEAEIFVGQNRPYKTGQSSTSGDAVVSTY 506

Query: 311 DY---GVVLHFTPTV-LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +Y   G+ L  TP +    G + L++  +    V   +  ++P    RK DTTV L  G 
Sbjct: 507 EYKDVGIKLKITPRINREDGLVKLKVY-QTYNTVSEASTTELPITNDRKTDTTVLLADGS 565

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF--NREETEIFIAA 414
           T+V+ GL++ D  + + G+P LS +P+LG LF+ +    N+    +F++A
Sbjct: 566 TMVIGGLIRADHTRTEAGVPYLSDLPLLGWLFKTTSNSGNKNTLMVFLSA 615


>gi|332308478|ref|YP_004436329.1| pilus (MSHA type) biogenesis protein MshL [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175807|gb|AEE25061.1| pilus (MSHA type) biogenesis protein MshL [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 552

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 104/235 (44%), Gaps = 39/235 (16%)

Query: 215 FQHSITGSSSGPSKSFAADFGG----KFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
           FQ S T  S G   + +A  GG     FV++  DFS            VL+ L+    ++
Sbjct: 316 FQFSTTSGSLG--DAISATLGGVTSLSFVNK--DFS-----------GVLNLLQTQGNVQ 360

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFT 319
            L+ P +TAI+ Q A    G    + T  SS                +T    G+ L  T
Sbjct: 361 VLSSPRVTAINNQKAVIKVGDDEYFVTDVSSESTVTAATASTTPNIELTPFFSGIALDVT 420

Query: 320 PTVLSPGRIGLR-----IQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVL 370
           P + + G + L      I+TE  E V+ +N       + +  +R++DT +   SG  +V+
Sbjct: 421 PQIDAQGGVLLHVHPSVIETEEQEKVVTLNEEQFVLPLAASNIRESDTIIHARSGEIVVI 480

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            GL++  I + +   PLL  IP+LG LF+N + +  + E+ I   P +V     R
Sbjct: 481 GGLMQSIISETESKTPLLGDIPLLGNLFKNRQESEIKKELVILLRPTVVSADTWR 535


>gi|297171846|gb|ADI22835.1| type II secretory pathway, component PulD [uncultured nuHF2 cluster
           bacterium HF0500_31B05]
          Length = 815

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 124/279 (44%), Gaps = 27/279 (9%)

Query: 182 KKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +K++N+L+   +    Q+ ++  + EV  + L+ IG +  +TGS +    SF    G   
Sbjct: 262 EKLINVLHTQIDVPAQQIFIEALVIEVNTNRLRDIGVE--LTGSKNHVQGSFERSEGNPL 319

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +    FS +   D  S +  L AL        L+ P++  ++ + A    G Q      
Sbjct: 320 TTLL--FSRESFTDFLSLKGKLEALVEIGDAEILSSPSVLVLNDRQARVQVGRQIPIVRS 377

Query: 299 SSSTGATSVTTHDY---GVVLHFTPTV-LSPGRIGLRIQTEVS----------EPVIGVN 344
           ++ T  T+V   +Y   G+VL+  P + L   ++ ++I+T +S          E  +  +
Sbjct: 378 TTPTAGTTVKGIEYFPIGIVLNLRPRINLDQSQVTIQIETIISSISTESATKLEDGVSED 437

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P    R  +T V +  G   ++ GLL  +  + K G+P LS +P LG LF   R  
Sbjct: 438 ISFAPIVDNRLVETYVRVADGTPFIIGGLLSTERLESKVGVPFLSAVPFLGHLFSRKRVE 497

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
             + E+ +  TP +V P+  R+ S     Y +  D+  F
Sbjct: 498 NTQREVIVVITPHIV-PLETRNFS-----YLIPKDSDLF 530


>gi|298485082|ref|ZP_07003178.1| Type IV pilus biogenesis protein PilQ [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160334|gb|EFI01359.1| Type IV pilus biogenesis protein PilQ [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 718

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 32/248 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   + ++SG  K  ++  D  G               F
Sbjct: 465 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPF 524

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 525 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 584

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     ++GV     
Sbjct: 585 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGV----- 638

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 639 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 698

Query: 409 EIFIAATP 416
           E+ +  TP
Sbjct: 699 ELLVFLTP 706


>gi|289625073|ref|ZP_06458027.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330865718|gb|EGH00427.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 701

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 32/248 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   + ++SG  K  ++  D  G               F
Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPF 507

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 508 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     ++GV     
Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGV----- 621

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681

Query: 409 EIFIAATP 416
           E+ +  TP
Sbjct: 682 ELLVFLTP 689


>gi|283851919|ref|ZP_06369195.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
 gi|283572643|gb|EFC20627.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
          Length = 542

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 23/248 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADFGGKFVSEGGDFSVKGVLDR 253
           QV++   + EV  D   ++G    +   SS  +   FA D   K + E G  S    L +
Sbjct: 267 QVSISAMLVEVILDESSKMGLDWKLRAWSSNKAYNEFAQDTLAKTL-ETGSQSASANLAK 325

Query: 254 FS-----------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---- 292
           +S                    ++H +   T  + L+ P L     Q AS + G +    
Sbjct: 326 YSDAGTKAAMFFNIFPGGYLSMLVHMISSDTNAKILSSPHLLVADNQEASISLGREIPIL 385

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
             Y+T +++    + +   +G+ L  TPT+   G + L++  ++S         D     
Sbjct: 386 KEYRTDTNNDPIKTYSQRTFGLELKMTPTIADNGDVTLKVSQKLSNLDEQDTTNDTYKAS 445

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R ADTTV +    T+V+ GL     ++   G P   KIP+LG LF     ++++ E+ +
Sbjct: 446 ERTADTTVVVHDKQTLVIGGLTMQTDEKEDSGTPTARKIPVLGYLFGTKSTSKQKRELLL 505

Query: 413 AATPFLVK 420
             TP +V+
Sbjct: 506 FITPTVVR 513


>gi|83859862|ref|ZP_00953382.1| General (type II) secretion pathway (GSP) D protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852221|gb|EAP90075.1| General (type II) secretion pathway (GSP) D protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 622

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 28/181 (15%)

Query: 260 LHALERATA--IRTLAEPTLTAISGQSASFTSG-------GQHLYKTVSSSTGAT----S 306
           + A  R+T   I  L+ P + A SG+SA    G        Q    T  S  G+T    S
Sbjct: 407 IEAAARSTNSNINVLSTPRIVARSGESAEVQVGTDVPIITSQRAANTQDS--GSTDILQS 464

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-------RKADTT 359
           V+    GV+L   P V S  RI L I  EVS      +A D P+  +       R+  ++
Sbjct: 465 VSYRSTGVLLTVEPRVYSNNRIDLTIMQEVS------SADDNPNQAIASPIISNRRMTSS 518

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T VL GL+ + + +   G+PL+  IP+LG +F+   F+ ++  + +  TP+++
Sbjct: 519 ITLQDGQTAVLGGLMSETVNRGSTGVPLVQDIPVLGNIFKTETFSNDQRVLLVLVTPYIL 578

Query: 420 K 420
            
Sbjct: 579 N 579


>gi|289676481|ref|ZP_06497371.1| type II and III secretion system protein:NolW-like:NolW-like
           [Pseudomonas syringae pv. syringae FF5]
          Length = 701

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 32/248 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   + ++SG  K  ++  D  G               F
Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAGNTSGNLTPNVPF 507

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 508 VDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681

Query: 409 EIFIAATP 416
           E+ +  TP
Sbjct: 682 ELLVFLTP 689


>gi|289648291|ref|ZP_06479634.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 701

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 32/248 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   + ++SG  K  ++  D  G               F
Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPF 507

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 508 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     ++GV     
Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGV----- 621

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681

Query: 409 EIFIAATP 416
           E+ +  TP
Sbjct: 682 ELLVFLTP 689


>gi|254246658|ref|ZP_04939979.1| GspD [Burkholderia cenocepacia PC184]
 gi|124871434|gb|EAY63150.1| GspD [Burkholderia cenocepacia PC184]
          Length = 775

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 12/153 (7%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336
           + GQ+    +G    Y  ++S T + +  T+D    G+ LH  P +   G + L++ TE 
Sbjct: 532 VVGQNVPIATGS---YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTED 588

Query: 337 SEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           S  V G  NA   P++  R   +T+   +G  IVL GL++D+ Q     +PLL  IP +G
Sbjct: 589 SAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 648

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
            LFR+    R +T + +      ++PV + D S
Sbjct: 649 QLFRSESKVRAKTNLMV-----FLRPVIISDRS 676


>gi|330977147|gb|EGH77105.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 701

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 32/248 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   + ++SG  K  ++  D  G               F
Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAGNTSGNLTPNVPF 507

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 508 VDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681

Query: 409 EIFIAATP 416
           E+ +  TP
Sbjct: 682 ELLVFLTP 689


>gi|170731436|ref|YP_001763383.1| general secretion pathway protein D [Burkholderia cenocepacia
           MC0-3]
 gi|169814678|gb|ACA89261.1| general secretion pathway protein D [Burkholderia cenocepacia
           MC0-3]
          Length = 780

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 12/153 (7%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336
           + GQ+    +G    Y  ++S T + +  T+D    G+ LH  P +   G + L++ TE 
Sbjct: 532 VVGQNVPIATGS---YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTED 588

Query: 337 SEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           S  V G  NA   P++  R   +T+   +G  IVL GL++D+ Q     +PLL  IP +G
Sbjct: 589 SAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 648

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
            LFR+    R +T + +      ++PV + D S
Sbjct: 649 QLFRSESKVRAKTNLMV-----FLRPVIISDRS 676


>gi|301382657|ref|ZP_07231075.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060641|ref|ZP_07252182.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato K40]
 gi|302130950|ref|ZP_07256940.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|331016027|gb|EGH96083.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 701

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 32/256 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   S   S +G   ++  D  G               F
Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSRNGKWTTYGLDDNGDEGGNTNANLTSNIPF 507

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 508 VDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681

Query: 409 EIFIAATPFLVKPVAM 424
           E+ +  TP ++   A+
Sbjct: 682 ELLVFLTPRIMNNQAI 697


>gi|122091112|emb|CAL13995.1| putative membrane transport protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 371

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G    Y       GAT++   +  + +  TP +L  G+I L 
Sbjct: 220 IASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFKEAVLGMEVTPKILRNGKITLN 279

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P + +  GD  +  + K +  T + +  G TIVL G+ +    Q    +PLL+
Sbjct: 280 LKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETIVLGGIFQQKSSQGVNKVPLLA 339

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP LG LF+     +   E+ I  TP L+
Sbjct: 340 DIPWLGGLFKQDTQQQSRRELVIFITPKLI 369


>gi|303248827|ref|ZP_07335077.1| general secretion pathway protein D [Desulfovibrio fructosovorans
           JJ]
 gi|302489768|gb|EFL49699.1| general secretion pathway protein D [Desulfovibrio fructosovorans
           JJ]
          Length = 695

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 9/161 (5%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSP 325
           L+ P L  +  + AS T      Y T + S       T+      D G  L  TP +   
Sbjct: 463 LSTPQLMTLDNEEASITVAENRPYLTATDSGQNKQDRTYQQFDYKDVGTKLKITPHIGQS 522

Query: 326 GRIGLRIQTEVS--EPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             I L+I  EVS  +    ++ G + P+ R R   TTV++  G TIV++GL+    Q   
Sbjct: 523 DSIRLKILQEVSRVDKAETLDTGSLQPTTRKRATQTTVQVKDGQTIVISGLMGVSDQDSF 582

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
             +P +S IP+LG LF++    RE+T +++  TP +V+  A
Sbjct: 583 SNVPGISDIPVLGWLFKHKSKTREKTNLYVFITPRIVQSPA 623


>gi|294627648|ref|ZP_06706230.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598000|gb|EFF42155.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 668

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  ++ A++  T    L+ P++  +  + A    G Q +  T     GA       ++  
Sbjct: 431 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNLFRTIQR 489

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTI 368
            D GV L   P + + G I L I+ EVS     V+A      +  R+ +T V + +G  +
Sbjct: 490 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIV 549

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            L GLL  + +Q  E +PLL  +P LGALFR+   NR++T + +   P +++  A
Sbjct: 550 ALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 604


>gi|28872241|ref|NP_794860.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213969446|ref|ZP_03397583.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato T1]
 gi|28855495|gb|AAO58555.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213925817|gb|EEB59375.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato T1]
          Length = 718

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 32/256 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGK--------------F 238
           QV ++  I E   D  KQ+G +   S   S +G   ++  D  G               F
Sbjct: 465 QVMIEARIVEANVDYNKQLGVRWGGSTNTSRNGKWTTYGLDDNGDEGGNTNANLTSNIPF 524

Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V  G   +  G     V +    +  L A+E+      +++P +     ++A    G + 
Sbjct: 525 VDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 584

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348
            Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     
Sbjct: 585 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 638

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++
Sbjct: 639 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 698

Query: 409 EIFIAATPFLVKPVAM 424
           E+ +  TP ++   A+
Sbjct: 699 ELLVFLTPRIMNNQAI 714


>gi|116328309|ref|YP_798029.1| Type II secretory pathway component, protein D [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331035|ref|YP_800753.1| Type II secretory pathway component, protein D [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121053|gb|ABJ79096.1| Type II secretory pathway component, protein D [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124724|gb|ABJ75995.1| Type II secretory pathway component, protein D [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 598

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 19/256 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++ +L+ +   QV L+V I E+    L   G      G + G   S  +       S 
Sbjct: 302 RKIIKVLD-SARKQVLLEVLIVELTSSDLNDFGIDWRYKGEAFGQFNSGLSKEANIINSN 360

Query: 242 GGDFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G        L  FS             +L A +       L+ P +  +  Q A  + G 
Sbjct: 361 GQINPNVNTLSGFSLGFLKAGSEQIIGILSANQGNENFNVLSAPQVLTVDNQEAEISVGQ 420

Query: 292 QHLYKTVSSSTG-----ATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               +T S + G     A +V  ++Y   G+ L FTP V    RI L +  E+       
Sbjct: 421 DVPVRTQSRNAGTGGTNAVTVDNYEYRPTGIKLKFTPHVNKNNRITLELFQEIKNIAEIA 480

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            AG  P++  R+  T++ + +  +IV+ GL+ +D Q+    IP L  IP LG LF+ +  
Sbjct: 481 LAGGNPTFNRREIKTSISIENTQSIVIGGLISNDKQKRIIKIPFLGDIPYLGHLFKRTTE 540

Query: 404 NREETEIFIAATPFLV 419
             ++T + +  TP ++
Sbjct: 541 KIKKTNLMVFITPHIL 556


>gi|294666182|ref|ZP_06731437.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604047|gb|EFF47443.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 668

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  ++ A++  T    L+ P++  +  + A    G Q +  T     GA       ++  
Sbjct: 431 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNPFRTIQR 489

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTI 368
            D GV L   P + + G I L I+ EVS     V+A      +  R+ +T V + +G  +
Sbjct: 490 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIV 549

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            L GLL  + +Q  E +PLL  +P LGALFR+   NR++T + +   P +++  A
Sbjct: 550 ALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 604


>gi|163857177|ref|YP_001631475.1| general secretion pathway protein D [Bordetella petrii DSM 12804]
 gi|163260905|emb|CAP43207.1| general secretion pathway protein D [Bordetella petrii]
          Length = 862

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 35/258 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--AADFGGKFVSEGGDFS------ 246
           QV ++  I EV ++   + G Q  +TG+ S     F    + GG  +   G  +      
Sbjct: 419 QVLVESLIVEVSQEKAAEFGIQW-MTGAGSLDGSGFIGGTNLGGSGIGSAGTGATTLDAL 477

Query: 247 --------VKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG--- 290
                   VKG +D       +   +  AL+ +     L+ P L  +  + AS   G   
Sbjct: 478 GRGLTLGLVKGTVDVLGNQVINLNVLARALQNSGEANILSTPNLLTLDNEPASILVGKTV 537

Query: 291 ----GQHLYK-TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIG 342
               GQ++   +  S+    ++   D G+ L+  P +   G + L I  EVS   E    
Sbjct: 538 PFVTGQYVTSGSAGSNNPFQTIEREDIGLKLNIRPQISEGGAVKLDIYQEVSSIDEASSS 597

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
              G + + R    DT+V +  G  IVL GLL+D +      +P LS IP+LGALFR  +
Sbjct: 598 ETTGLVTNKRA--IDTSVLVDDGQIIVLGGLLEDRVTSTTSAVPGLSSIPLLGALFRYDK 655

Query: 403 FNREETEIFIAATPFLVK 420
             R ++ + +   PF+V+
Sbjct: 656 RQRTKSNLMVFLRPFVVR 673


>gi|325294579|ref|YP_004281093.1| type II and III secretion system protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065027|gb|ADY73034.1| type II and III secretion system protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 642

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 117/273 (42%), Gaps = 34/273 (12%)

Query: 182 KKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGG 236
           +++MNLL    +   QV +K  I ++     K  GF   I G +   + PS      +G 
Sbjct: 370 QEIMNLLKKLDKPMKQVIVKAKIVQISTSAAKDFGFGWLIGGYNHMGTPPSSYITGSYGF 429

Query: 237 ---------KFVSE-----------GGDFSVKGVLDR---FSFETVLHALERATAIRTLA 273
                     F++E           G      G+L++      E  L AL+     + ++
Sbjct: 430 GLGSNTGVLPFINETSYSSLYNIPVGESTLALGILNKSQNLKVEIALKALQLDGNAKIVS 489

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGL 330
            P +  ++ Q A+   G +  Y+  + ++G  +  T  +    ++L   P + +   I L
Sbjct: 490 SPEVLTLNNQEATIEQGIEIPYRESTVASGGATTYTVSFKRASLILKVKPHITNNNEIIL 549

Query: 331 RIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            ++     P    + +   + P+   R   + +++ +G TIV+ G+ + +  + K G+P+
Sbjct: 550 DLEVRKDSPNYEHVALTGSNEPAIDTRNVKSRIKVANGNTIVIGGIYEKEKSKSKTGVPV 609

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +S IP+LG LF+       E  + I  TP +V+
Sbjct: 610 ISNIPLLGWLFKQESVKFTEKNLLIFITPKVVE 642


>gi|224171310|ref|XP_002339480.1| predicted protein [Populus trichocarpa]
 gi|222875215|gb|EEF12346.1| predicted protein [Populus trichocarpa]
          Length = 263

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 4/169 (2%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD    +  L ALE +   + ++ P + A+ G++A    G +  YKT S +   T     
Sbjct: 98  LDTIVLDLQLSALESSGGGKVISSPKVMALDGETARIGQGTEIPYKTTSDNGTTTEFKKA 157

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           +  + L  TP +     I L I    S P  GV   D  +   ++A+T + L +G T V+
Sbjct: 158 E--LALEVTPLINPDNTILLEILATNSSP--GVAYTDGVAINTKEAETKLLLKNGETTVI 213

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G+  ++ Q    G P L  +P +G LF+    + + TE+ I  TP +V
Sbjct: 214 GGIYTENEQNSDSGTPYLKDLPFIGNLFKYKTSSNDRTELLIFLTPHIV 262


>gi|24375599|ref|NP_719642.1| MSHA biogenesis protein MshL [Shewanella oneidensis MR-1]
 gi|24350494|gb|AAN57086.1|AE015842_6 MSHA biogenesis protein MshL [Shewanella oneidensis MR-1]
          Length = 560

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 28/219 (12%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           T + +G S    +  GG         S+KG      F T++  L+    +  L+ P +TA
Sbjct: 327 TSAGTGLSDKITSSLGGV-----TSLSIKGS----DFNTMISLLDTQGDVDVLSSPRVTA 377

Query: 280 ISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIG 329
            + Q A    G    + T  SST   G T VTT          G+ L  TP +   G + 
Sbjct: 378 SNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKDGNVL 437

Query: 330 LRIQ---TEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           L +     +V E    +   +      +    +R++DT +   SG  +V+ GL+K +  +
Sbjct: 438 LHVHPSVIDVKEQTKDIKVSNESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENIE 497

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +   +PLL  IP +G LF+N    +++TE+ I   P +V
Sbjct: 498 VVSQVPLLGDIPFVGELFKNRSKQKKKTELIIMLKPTVV 536


>gi|325925811|ref|ZP_08187183.1| Type II secretory pathway protein D [Xanthomonas perforans 91-118]
 gi|325543797|gb|EGD15208.1| Type II secretory pathway protein D [Xanthomonas perforans 91-118]
          Length = 692

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  ++ A++  T    L+ P++  +  + A    G Q +  T     GA       ++  
Sbjct: 453 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNPFRTIQR 511

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTI 368
            D GV L   P + + G I L I+ EVS     V+A      +  R+ +T V + +G  +
Sbjct: 512 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIV 571

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            L GLL  + +Q  E +PLL  +P LGALFR+   NR++T + +      ++P  +RD
Sbjct: 572 ALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMV-----FIRPTVIRD 624


>gi|229576793|ref|YP_001008121.2| putative outer membrane porin HofQ [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 376

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G    Y       GAT++   +  + +  TP +L  G+I L 
Sbjct: 225 IASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFKEAVLGMEVTPKILRNGKITLN 284

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P + +  GD  +  + K +  T + +  G TIVL G+ +    Q    +PLL+
Sbjct: 285 LKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETIVLGGIFQQKSSQGVNKVPLLA 344

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP LG LF+     +   E+ I  TP L+
Sbjct: 345 DIPWLGGLFKQDTQQQSRRELVIFITPKLI 374


>gi|167717371|ref|ZP_02400607.1| general secretion pathway protein D [Burkholderia pseudomallei
           DM98]
          Length = 730

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+L  FS  +  + L     + TL       + GQ+    +G    Y  ++S     +  
Sbjct: 483 GLLQYFSGVSDANVLSTPNLV-TLDNEEAKIVVGQNVPIPTGS---YSNLTSGNTNNAFN 538

Query: 309 THD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPS 364
           T+D    G+ LH  P +   G + L++ TE S  V   +N    P++  R   +TV   +
Sbjct: 539 TYDRRDVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTINNQSGPTFNKRSIQSTVLADN 598

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +      ++PV +
Sbjct: 599 GEIIVLGGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVII 653

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
            D           + A+A   NR + I G
Sbjct: 654 ND----------RETAQAVTSNRYDYIQG 672


>gi|9625382|ref|NP_039614.1| gene IV product [Enterobacteria phage I2-2]
 gi|138048|sp|P15420|G4P_BPI22 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|14922|emb|CAA32520.1| gene IV product [Enterobacteria phage I2-2]
          Length = 428

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 13/195 (6%)

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            G    + GG F   G+ +       L A++  +  + ++ P +   SGQS  + S GQ+
Sbjct: 237 LGTALSTAGGSF---GIFNGNILALSLQAVQSDSNSKVISTPRILTQSGQSG-YISVGQN 292

Query: 294 LYKTVSSSTG-ATSVTT-------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           +       TG A SV          D GV L  TP V+  G++ L I T+         A
Sbjct: 293 VPFVTGKVTGEAASVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLSNQAIA 352

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            D+ + + R+  TTV++  G T++L GL+  +       +P +SKIP++G LFR+   ++
Sbjct: 353 SDIITNQ-RQIQTTVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIPLIGWLFRSHSDSK 411

Query: 406 EETEIFIAATPFLVK 420
           ++  +F+  T  +++
Sbjct: 412 DDRTMFVLLTAHVIR 426


>gi|116620187|ref|YP_822343.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223349|gb|ABJ82058.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 872

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 77/181 (42%), Gaps = 22/181 (12%)

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----------ATSVTTHDYGVVLHFT 319
           + L  P L A+    A+   G +    T S   G           T  T  D GV +  T
Sbjct: 448 KVLQSPQLRAVDNVKATLKIGDRQPTATGSFQPGIGGVGINPLVNTQFTYIDVGVNVELT 507

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P V   G + + I  ++S     VN G  D P    RK    + +  G   +LAGL K  
Sbjct: 508 PRVHDNGDVSMHIDLDISSVTGHVNLGGIDQPIIGQRKVSHDIRMHEGSVQLLAGLTKWQ 567

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             + K GIP L+ +PI+G LF     +RE  E+ IA  P +V+        RPD  Y+ E
Sbjct: 568 DTKTKTGIPGLANVPIIGRLFSGESVDRERQELMIALIPHIVR--------RPD--YTAE 617

Query: 438 D 438
           +
Sbjct: 618 N 618


>gi|224823626|ref|ZP_03696735.1| type IV pilus secretin PilQ [Lutiella nitroferrum 2002]
 gi|224604081|gb|EEG10255.1| type IV pilus secretin PilQ [Lutiella nitroferrum 2002]
          Length = 691

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +  + +A P +       A+   G +  Y+  +SS GATS +     + L   
Sbjct: 525 LQALQTESQGKIVASPRVLTSDRTEATIEQGQEIPYQEATSS-GATSTSFKKAVLSLKVK 583

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     I + IQ           +  +PS + +K +T V + +GGT+V+ G+   D  
Sbjct: 584 PQITPDSTILMDIQINNDTADFANLSNGVPSLKTKKVNTQVLVENGGTVVIGGIYTQDEN 643

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +    +PLL  IP+LGALFR+       TE+ +  TP +V
Sbjct: 644 EGLSKVPLLGDIPLLGALFRSKTKKDNRTELLVFLTPRVV 683


>gi|56476093|ref|YP_157682.1| general (Type II) secretion pathway (GSP) D protein [Aromatoleum
           aromaticum EbN1]
 gi|56312136|emb|CAI06781.1| General (Type II) secretion pathway (GSP) D protein [Aromatoleum
           aromaticum EbN1]
          Length = 771

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 132/301 (43%), Gaps = 41/301 (13%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           I+D+ +AV L+E  L+                  L++A E +V L+V + EV R  L+++
Sbjct: 308 IKDTPQAVRLAERLLAS-----------------LDVA-EPEVMLEVEVLEVARSKLREL 349

Query: 214 GFQHS-------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF-ETVLHALER 265
           G           +           AA    + V+  G     GV+ R  + +   +    
Sbjct: 350 GLDFPDEIGYGLLRSQQQITQTQTAAGIVSEVVTLPGSEIAPGVVPRAQWGDLTGYVTNP 409

Query: 266 ATAIRT---------LAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYG 313
           A  +R          LA P +   + + A    G +    T +S+     + SV+  D G
Sbjct: 410 ALTLRLRAEDGDTNLLANPRIRVKNREKAKIHIGEKLPVFTTTSTANVGVSASVSYLDVG 469

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRV--RKADTTVELPSGGTIVL 370
           + L   P V     + +++  EVS  V  V    D  +Y+V  R A T + L +G T VL
Sbjct: 470 LKLDVEPAVTLDDEVAIKVALEVSNIVREVPGPSDSLAYQVGTRSATTVLRLRNGETQVL 529

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGL+ D+ ++  + +P L  +P++G LF + R N  +TEI +  TP +V+ +    L+R 
Sbjct: 530 AGLISDEERRSAQRLPGLGDLPLIGRLFSSERNNASKTEIVLLITPRIVRNIVAPSLARA 589

Query: 431 D 431
           D
Sbjct: 590 D 590


>gi|254184073|ref|ZP_04890664.1| general secretion pathway protein D [Burkholderia pseudomallei
           1655]
 gi|184214605|gb|EDU11648.1| general secretion pathway protein D [Burkholderia pseudomallei
           1655]
          Length = 751

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+L  FS  +  + L     + TL       + GQ+    +G    Y  ++S     +  
Sbjct: 490 GLLQYFSGVSDANVLSTPNLV-TLDNEEAKIVVGQNVPIPTGS---YSNLTSGNTNNAFN 545

Query: 309 THD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPS 364
           T+D    G+ LH  P +   G + L++ TE S  V   +N    P++  R   +TV   +
Sbjct: 546 TYDRRDVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTINNQSGPTFNKRSIQSTVLADN 605

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +      ++PV +
Sbjct: 606 GEIIVLGGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVII 660

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
            D           + A+A   NR + I G
Sbjct: 661 ND----------RETAQAVTSNRYDYIQG 679


>gi|255021644|ref|ZP_05293686.1| Type IV pilus biogenesis protein PilQ [Acidithiobacillus caldus
           ATCC 51756]
 gi|254968904|gb|EET26424.1| Type IV pilus biogenesis protein PilQ [Acidithiobacillus caldus
           ATCC 51756]
          Length = 772

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 1/172 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+ +   + ++ P +     + A    G +  Y+  +SS GATSV+     + L  T
Sbjct: 597 LQALQASNQAKIISSPKVLTQDNEKAVIEQGQEIPYQQATSS-GATSVSFKKAELSLDVT 655

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G++ L +  + ++P              ++  T + + +G T+V+ G+  D   
Sbjct: 656 PHIAPNGKVTLDVDAKNNQPNYAQTTPSGVPINTQEVKTKLLVNNGQTVVIGGIYTDSKS 715

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
               G+P+L  IP+LG LF++  +N  ++E+ +  TP +V   +  DL+  D
Sbjct: 716 HYDTGVPVLKDIPLLGWLFKSKTYNDSQSELLVFLTPKVVGGQSEDDLAGED 767


>gi|146282151|ref|YP_001172304.1| general secretion pathway protein D [Pseudomonas stutzeri A1501]
 gi|145570356|gb|ABP79462.1| general secretion pathway protein D [Pseudomonas stutzeri A1501]
          Length = 644

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 119/260 (45%), Gaps = 38/260 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGG--------- 243
           QV ++  I EV  DI   +G Q +I   GS+ G   +   +FG   +S G          
Sbjct: 345 QVMVEAAIVEVSGDITDALGVQWAIDARGSTGG---AGGVNFGNTGISVGSVLNAINENE 401

Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                 D ++ GV  R SF  ++ AL   +    L+ P+L  +  Q A    G    ++T
Sbjct: 402 IPNNLPDGAIIGVGTR-SFGALITALSSNSKSNLLSTPSLLTLDNQEAEILVGQNVPFQT 460

Query: 298 VSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346
            S +T A       T++   D GV L  TP +     + L+I+ E+S       +   A 
Sbjct: 461 GSYTTDAAGANNPFTTIERQDIGVTLKVTPHINEGATLRLQIEQEISSIAPSASLTAQAV 520

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+ + + R   +T+    G  IVL GL++DD+ +    +PLL  IP+LG LFR++    +
Sbjct: 521 DLVTNK-RAIKSTILAEDGQVIVLGGLIQDDVTRTNSKVPLLGDIPLLGGLFRST----Q 575

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           ET I      FL +P  +RD
Sbjct: 576 ETHIKRNLMVFL-RPTVIRD 594


>gi|320352793|ref|YP_004194132.1| general secretion pathway protein D [Desulfobulbus propionicus DSM
           2032]
 gi|320121295|gb|ADW16841.1| general secretion pathway protein D [Desulfobulbus propionicus DSM
           2032]
          Length = 752

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 6/174 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGV 314
           V++A +    +  +A P +     + AS   G    Y T  ++T A    T+    D   
Sbjct: 451 VVNAYKSDDDVNVIATPQILTTDNKKASIKVGENVPYITSKNTTDAEQDYTNYEYKDVAT 510

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L  TP V     + L I  EV + +    A D PS   R A+TTV + +  T+V+ G++
Sbjct: 511 SLTITPQVNQAEVVRLEIGVEVIK-LKNTEATDTPSTFTRTAETTVVVHNEQTVVIGGMI 569

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDL 427
             D    +  +P+L  IP+LG +F++   ++E+T ++I  TP +V+ P  + DL
Sbjct: 570 GQDTTSGEYKVPVLGDIPVLGWMFKSRSNSQEKTNLYIFITPHIVENPAEIADL 623


>gi|253701597|ref|YP_003022786.1| type II and III secretion system protein [Geobacter sp. M21]
 gi|251776447|gb|ACT19028.1| type II and III secretion system protein [Geobacter sp. M21]
          Length = 870

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 19/186 (10%)

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPG 326
            TL+ P +   + + A F  G +    T SS +G   + +V   D GV ++  PT+    
Sbjct: 429 ETLSNPKIRVKNREKAKFNVGTRVPITTTSSPSGGGVSVNVQYVDVGVKVNAEPTIQLNN 488

Query: 327 RIGLRIQTEVS----EPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            + +++  EVS    E  IG + A  + +   R  DT + L  G T ++ GL++      
Sbjct: 489 EVAIKLGLEVSSILNEKTIGTDQATTVVTIGTRNLDTVLSLKDGETSIIGGLIQKTQTDS 548

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           K  + LL  IPI+G LF N+   +++TE+ +A TP +V+ V + D           +D  
Sbjct: 549 KNKVFLLGDIPIIGPLFSNTSDKKDKTELLLAITPRIVRGVTVPD-----------NDVA 597

Query: 442 AFFFNR 447
           AF+  R
Sbjct: 598 AFWSGR 603


>gi|294139057|ref|YP_003555035.1| MSHA biogenesis protein MshL [Shewanella violacea DSS12]
 gi|293325526|dbj|BAJ00257.1| MSHA biogenesis protein MshL [Shewanella violacea DSS12]
          Length = 560

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 110/249 (44%), Gaps = 24/249 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252
           QV ++  I EV      Q G    ++ G     +  F    GG  +S+     + GV   
Sbjct: 281 QVIIEAKILEVTLSDGYQQGINWQNVLGHVGDTNIEFGTSSGGNSLSDQITSVIGGVTSL 340

Query: 253 RFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATS 306
           +FS   F  +++ L+    +  L+ P +TA++ Q A    G    + T  SST   G T 
Sbjct: 341 KFSGTDFAAMINLLDTQGDVDVLSSPRVTALNNQKAVIKVGTDEYFVTDVSSTTVAGNTP 400

Query: 307 VTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV---SEPVIGVNAGD------MPS 350
           +TT +        G+ L  TP +   G + L I   V    E    +   D      +  
Sbjct: 401 ITTPEVELTPFFSGIALDVTPQIDGEGNVLLHIHPSVISIKEQTKTIKISDSTLELPLAQ 460

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++DT +   SG  +V+ GL+K +  +L   +PLL  IP+LG LF N   + ++TE+
Sbjct: 461 SDIRESDTVIMARSGDVVVIGGLMKSENIELLSKVPLLGDIPLLGELFTNRSKSLKKTEL 520

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 521 VILLKPTVV 529


>gi|312114563|ref|YP_004012159.1| type II and III secretion system protein [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219692|gb|ADP71060.1| type II and III secretion system protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 636

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 136/314 (43%), Gaps = 41/314 (13%)

Query: 136 IRVEMVSDTVVLHGMVRTIQ--DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           ++  M   TV  +  + TIQ  D++  +E++E  ++ + R                    
Sbjct: 298 LKASMDVKTVFANNDLGTIQIRDTRETLEVAERLIATNDRKPA----------------- 340

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            ++ L+V I E+ R   +Q+G  +  + +   P  SF        ++ G   +   V+  
Sbjct: 341 -EIMLEVEILEIDRTKAEQLGLDYGSSITVQLPQVSFTD------LANGAKLATNSVI-- 391

Query: 254 FSFETV-LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSV--T 308
            +F TV  + L+     RTL+ P +  + GQ A    G +   ++  V  +TG T     
Sbjct: 392 -TFPTVTFNYLKTDVGARTLSNPRIRTVDGQPAKIHVGDRVPLQSSFVQDTTGQTRTLFE 450

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV--RKADTTVELPS 364
            HD G+ L   P     G I + ++ EVS   +G N G    P+Y +  R   TT+ L  
Sbjct: 451 YHDIGIQLDVIPKYHLDGSIFVDLKIEVSS--LGSNLGTAAQPAYAIGSRNVHTTMILRE 508

Query: 365 GGTIVLAGLLKDDIQQLKEGIPL-LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
             T +L GL+K++ Q    G+P+  S + +L  LF  S      +E+ +  TP L++P +
Sbjct: 509 NETALLGGLIKEEEQHNMNGLPVERSGVSVLDRLFSTSSDKVGRSELLLTITPRLIRPQS 568

Query: 424 MRDLSRPDDHYSVE 437
               S  D +   E
Sbjct: 569 FAQRSATDFYSGTE 582


>gi|325915066|ref|ZP_08177395.1| type II secretion system protein D [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538764|gb|EGD10431.1| type II secretion system protein D [Xanthomonas vesicatoria ATCC
           35937]
          Length = 680

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  ++ A++  T    L+ P++  +  + A    G Q +  T     GA       ++  
Sbjct: 444 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNPFRTIQR 502

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTI 368
            D GV L   P + + G I L I+ EVS     V+A      +  R+ +T V + +G  +
Sbjct: 503 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIV 562

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            L GLL  + +Q  E +PLL  +P LGALFR+   NR++T + +   P +++  A
Sbjct: 563 ALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 617


>gi|327480391|gb|AEA83701.1| general secretion pathway protein D [Pseudomonas stutzeri DSM 4166]
          Length = 644

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 119/260 (45%), Gaps = 38/260 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGG--------- 243
           QV ++  I EV  DI   +G Q +I   GS+ G   +   +FG   +S G          
Sbjct: 345 QVMVEAAIVEVSGDITDALGVQWAIDARGSTGG---AGGVNFGNTGISVGSVLNAINKNE 401

Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                 D ++ GV  R SF  ++ AL   +    L+ P+L  +  Q A    G    ++T
Sbjct: 402 IPNNLPDGAIIGVGTR-SFGALITALSSNSKSNLLSTPSLLTLDNQEAEILVGQNVPFQT 460

Query: 298 VSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346
            S +T A       T++   D GV L  TP +     + L+I+ E+S       +   A 
Sbjct: 461 GSYTTDAAGANNPFTTIERQDIGVTLKVTPHINEGATLRLQIEQEISSIAPSASLTAQAV 520

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+ + + R   +T+    G  IVL GL++DD+ +    +PLL  IP+LG LFR++    +
Sbjct: 521 DLVTNK-RAIKSTILAEDGQVIVLGGLIQDDVTRTNSKVPLLGDIPLLGGLFRST----Q 575

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           ET I      FL +P  +RD
Sbjct: 576 ETHIKRNLMVFL-RPTVIRD 594


>gi|237798101|ref|ZP_04586562.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020953|gb|EGI01010.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 701

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 14/212 (6%)

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L   G +   TG++ GP+  F  D G    + G    +  V +    +  L A+E+    
Sbjct: 487 LDNNGDEAGNTGNNLGPNIPFV-DLGAANATTG--IGLGFVTNNTLLDLELSAMEKTGNG 543

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI 
Sbjct: 544 EIVSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRII 602

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + ++    EP     V+GV     P  +  + +  V +  G TIV+ G+  +   ++ + 
Sbjct: 603 MEVKVTKDEPDYLNAVLGV-----PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDK 657

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +P L  +P LG LFR    +  ++E+ +  TP
Sbjct: 658 VPFLGDVPYLGRLFRRDVVSESKSELLVFLTP 689


>gi|294055468|ref|YP_003549126.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614801|gb|ADE54956.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 906

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 37/199 (18%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGA------T 305
           + A+ R +    ++ P +T +SG+ A+ T   +  Y         TVSS+         T
Sbjct: 668 IRAIARQSGSDLMSAPKVTVLSGKRANITVAQELRYPESYGDIESTVSSNNNGGAAISIT 727

Query: 306 SVTTHDY-----GVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGD---- 347
           + T  D+     GV L  TP V +   I L ++  V+E         P + + +G     
Sbjct: 728 AGTPEDFVVRNVGVELAVTPNVENDDTISLILEPRVTEFEGFVEYGGPSVALASGTTVTV 787

Query: 348 -----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                 P +  R+  T V +  G TIV+ GL +D+++ +++ +P+L  IP LG LFR+  
Sbjct: 788 PAGFYQPVFSTREISTEVTIFDGATIVMGGLTRDEVKYIEDKVPVLGDIPALGRLFRSEG 847

Query: 403 FNREETEIFIAATPFLVKP 421
             R++  + I  T  +V P
Sbjct: 848 ETRQKRNLLIFVTANMVSP 866


>gi|262039342|ref|ZP_06012655.1| general secretion pathway protein D [Leptotrichia goodfellowii
           F0264]
 gi|261746604|gb|EEY34130.1| general secretion pathway protein D [Leptotrichia goodfellowii
           F0264]
          Length = 385

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 104/228 (45%), Gaps = 12/228 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-FAADFGGKFVSEGGDFSVKGVL 251
           +DQ+ +K TI +   ++ +++G   +I  ++  P+KS   A F    ++ G  F+  G  
Sbjct: 151 KDQIIIKGTIIDTSSNLFEKLGVDWNINSNNPEPAKSNLVAKFLNGEITIGSIFASGGKF 210

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVT 308
               F    + L     I+  A PTL  +  +        + L    KT  ++T  T   
Sbjct: 211 LGIDF----NLLRENGDIKIEAMPTLLIMEDEEGELKVTEEVLVGEKKTTKNNTDYTEPI 266

Query: 309 THDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPS 364
             + G+V    P +       +I L+I TE+S   +  N       + + +  T + L +
Sbjct: 267 FSEAGIVFKILPEIRKINGEKKILLKIDTEISNFKLTSNYSSGSGAKQKNQTKTIITLNN 326

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           GG+  + GL ++  ++  + +P  S IPI+G LF+  R N+E  +I+I
Sbjct: 327 GGSTFIGGLKQNVTKETIKKVPFFSSIPIIGPLFKYKRNNKEVRDIYI 374


>gi|78046312|ref|YP_362487.1| type II secretory pathway protein D [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034742|emb|CAJ22387.1| type II secretory pathway protein D [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 689

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  ++ A++  T    L+ P++  +  + A    G Q +  T     GA       ++  
Sbjct: 450 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNPFRTIQR 508

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTI 368
            D GV L   P + + G I L I+ EVS     V+A      +  R+ +T V + +G  +
Sbjct: 509 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIV 568

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            L GLL  + +Q  E +PLL  +P LGALFR+   NR++T + +      ++P  +RD
Sbjct: 569 ALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMV-----FIRPTIIRD 621


>gi|289679098|ref|ZP_06499988.1| general secretion pathway protein D [Pseudomonas syringae pv.
           syringae FF5]
          Length = 221

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHD 311
           + +  L ALE     + L+ P+L  ++ Q A    G        S +T     T++++ +
Sbjct: 18  NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVE 77

Query: 312 Y---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
           Y   GV+L   P +   G + + IQ +VS      N  D    P    R   T V   SG
Sbjct: 78  YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNANNSDANGNPRISTRSVATQVAAQSG 137

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++
Sbjct: 138 QTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI 191


>gi|15598301|ref|NP_251795.1| general secretion pathway protein D [Pseudomonas aeruginosa PAO1]
 gi|544439|sp|P35818|GSPD_PSEAE RecName: Full=General secretion pathway protein D; Flags: Precursor
 gi|9949215|gb|AAG06493.1|AE004734_11 general secretion pathway protein D [Pseudomonas aeruginosa PAO1]
 gi|431185|emb|CAA48582.1| XcpQ [Pseudomonas aeruginosa PAO1]
          Length = 658

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 115/254 (45%), Gaps = 29/254 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242
           QV ++  I E+  DI   +G Q +I     G +K+  A+ G             K     
Sbjct: 360 QVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSIGTLLQSLESNKAPESI 419

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D ++ G+    SF  ++ AL   T    L+ P+L  +  Q A    G    ++T S +T
Sbjct: 420 PDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 478

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYR 352
            +       T+V   D GV L  TP +     + L I+ E+S  +      N  D+ + +
Sbjct: 479 NSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISALLPNAQQRNNTDLITSK 538

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP+LG LFR+++    +  + +
Sbjct: 539 -RSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLLGRLFRSTKDTHTKRNLMV 597

Query: 413 AATPFLVKPVAMRD 426
                 ++P  +RD
Sbjct: 598 -----FLRPTVVRD 606


>gi|167584994|ref|ZP_02377382.1| general secretion pathway protein D [Burkholderia ubonensis Bu]
          Length = 777

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 29/219 (13%)

Query: 245 FSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           F V+G+   L  F+  +  + L     I TL       + GQ+    +G    Y  ++S 
Sbjct: 483 FGVQGLGALLQYFAGSSDANVLSTPNLI-TLDNEEAKIVVGQNVPIPTGS---YSNLTSG 538

Query: 302 TGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDM-PSYRVR 354
           TG  +  T+D    G+ LH  P +   G + +++ TE   V +  +  +A    P++  R
Sbjct: 539 TGGNAFNTYDRRDVGLTLHVKPQITDGGILKMQLYTEDSSVVQSTVSTSANSPGPTFNKR 598

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              +TV   +G  IVL GL++D+       +PLL  IP +G LFR+   +R++T + +  
Sbjct: 599 SIQSTVLADNGEIIVLGGLMQDNYNTSNSKVPLLGDIPWIGQLFRSESKSRQKTNLMV-- 656

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
               ++PV + D           + A+A   NR + I G
Sbjct: 657 ---FLRPVIIND----------RETAQAVTANRYDYIQG 682


>gi|332139923|ref|YP_004425661.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549945|gb|AEA96663.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 547

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 117/261 (44%), Gaps = 24/261 (9%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---------HSITGSSSG------ 225
           ++K +N L+I  + QV ++  +  V  D+ +Q+G +         + I+GS  G      
Sbjct: 285 ARKTINALDIPVK-QVLIESRMVTVLDDVDEQLGVRWGFSDRQDDNGISGSIEGADTIAG 343

Query: 226 ---PSKSFAADFGGKFVSEGGD--FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
              PS     +      S  G   F +  ++D    +  L ALE       +A P +T +
Sbjct: 344 GVVPSIENRLNVNLPVSSAAGSIGFQIASLVDGTILDLELSALESENKGEIIASPRIT-V 402

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSE 338
           + Q  ++   G  +    ++S+GATSV      + L  TP +    RI   L +  +   
Sbjct: 403 ANQHEAYIEQGTEIPYVQATSSGATSVEFKKAVLSLKVTPHITPDNRIILDLVVTQDTRG 462

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             +  + GD  +   ++  T V + +G TIVL G+ +         +PL   +P++GALF
Sbjct: 463 ETVTTSTGDAVAIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGDLPLVGALF 522

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RNS   +++ E+ I  TP +V
Sbjct: 523 RNSSQLQQKRELLIFVTPKIV 543


>gi|107102654|ref|ZP_01366572.1| hypothetical protein PaerPA_01003719 [Pseudomonas aeruginosa PACS2]
          Length = 658

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 115/254 (45%), Gaps = 29/254 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242
           QV ++  I E+  DI   +G Q +I     G +K+  A+ G             K     
Sbjct: 360 QVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSIGTLLQSLESNKAPESI 419

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D ++ G+    SF  ++ AL   T    L+ P+L  +  Q A    G    ++T S +T
Sbjct: 420 PDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 478

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYR 352
            +       T+V   D GV L  TP +     + L I+ E+S  +      N  D+ + +
Sbjct: 479 NSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISALLPNAQQRNNTDLITSK 538

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP+LG LFR+++    +  + +
Sbjct: 539 -RSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLLGRLFRSTKDTHTKRNLMV 597

Query: 413 AATPFLVKPVAMRD 426
                 ++P  +RD
Sbjct: 598 -----FLRPTVVRD 606


>gi|238752500|ref|ZP_04613975.1| General secretion pathway protein D [Yersinia rohdei ATCC 43380]
 gi|238709263|gb|EEQ01506.1| General secretion pathway protein D [Yersinia rohdei ATCC 43380]
          Length = 625

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 14/182 (7%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
           +++ +  AL   +    LA P++  +    A F  G Q +    S+ T AT     S++ 
Sbjct: 390 NWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 448

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366
              GV+L   P +     + L I+ EVS       +N  ++ S +  R  +  V + SG 
Sbjct: 449 QSVGVMLKVKPQINKGDSVLLEIRQEVSSIADNSDINTHNLGSVFNKRVVNNAVLVKSGE 508

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T+V+ GLL   I +    +P L  IP++GALFR S+   E++ + +      +KP  +R+
Sbjct: 509 TVVVGGLLDKKINKTINKVPFLGDIPLIGALFRQSKERMEKSNLIL-----FIKPTILRE 563

Query: 427 LS 428
            S
Sbjct: 564 TS 565


>gi|90020990|ref|YP_526817.1| Type II secretory pathway component PulD-like protein
           [Saccharophagus degradans 2-40]
 gi|89950590|gb|ABD80605.1| type II and III secretion system protein [Saccharophagus degradans
           2-40]
          Length = 546

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 116/254 (45%), Gaps = 29/254 (11%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
           A + QV ++ TI EV      Q G   S+     + G +++   D     + +   F++ 
Sbjct: 278 ASQRQVLIEATIVEVTLSERYQAGIDWSVLQQNVADGVTRTATQDVLDVTLQDPV-FTIT 336

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---------- 298
            V    S    + AL+    +  ++ P +  ++ Q+A        +Y TV          
Sbjct: 337 HVGKNLS--ATVKALDTFGDVSVMSSPKVMTLNNQTALLKVVDNLVYFTVDVNIETNESG 394

Query: 299 -SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------------A 345
            S++T  T V T   G V+  TP +   G + L I+  +S  VIG+              
Sbjct: 395 PSTTTFETEVNTVPIGFVMSVTPFINEFGYVTLNIRPTISR-VIGLKRDPNPALAQVNVV 453

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            ++P  +VR+ ++ +++P G   ++ GL++D+    + G+P LSKIP++G LF+ +    
Sbjct: 454 NEIPEIQVREVESVLKIPDGEVAIIGGLMQDEQDNTEHGVPGLSKIPLVGGLFKYTDDKV 513

Query: 406 EETEIFIAATPFLV 419
           +++E+ I   P +V
Sbjct: 514 KKSELVIFIKPIVV 527


>gi|9626321|ref|NP_040655.1| hypothetical protein Pf3_5 [Pseudomonas phage Pf3]
 gi|138034|sp|P03668|VG430_BPPF3 RecName: Full=Putative assembly protein ORF430; Short=ORF430;
           Flags: Precursor
 gi|215375|gb|AAA88381.1| unknown protein [Pseudomonas phage Pf3]
 gi|215384|gb|AAA88390.1| unknown protein [Pseudomonas phage Pf3]
          Length = 430

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++  + E   D  K++G       S    S   A D     V+ G       + +  
Sbjct: 187 QVAIEANVVEASVDWSKRLGLNWGGALSLGNWSAVTAGDLS---VAAGSSIGFGFLSNTL 243

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           S + +  A+E     R ++ PTL  +  QSAS   G +  Y+  S+  GATSV      +
Sbjct: 244 SLDGLFTAMENEGNGRVVSRPTLLTLDRQSASVLRGTELPYQQ-SAGDGATSVAFKHAAL 302

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L   P +     I + +      P        +P     +  TT+ +P G T+VL G+ 
Sbjct: 303 SLEVKPVISPDNSIVIEVLVSRDSPNFSNAIDGVPPIDTNRLVTTIRVPHGQTVVLGGVY 362

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
               QQ    +  +S+IP +G LF+      E+ E+ I  TP
Sbjct: 363 STINQQGSSRVSGISRIPGIGRLFKKKEHVTEQYELLIFLTP 404


>gi|218890695|ref|YP_002439559.1| general secretion pathway protein D [Pseudomonas aeruginosa LESB58]
 gi|254236075|ref|ZP_04929398.1| general secretion pathway protein D [Pseudomonas aeruginosa C3719]
 gi|254241802|ref|ZP_04935124.1| general secretion pathway protein D [Pseudomonas aeruginosa 2192]
 gi|126168006|gb|EAZ53517.1| general secretion pathway protein D [Pseudomonas aeruginosa C3719]
 gi|126195180|gb|EAZ59243.1| general secretion pathway protein D [Pseudomonas aeruginosa 2192]
 gi|218770918|emb|CAW26683.1| general secretion pathway protein D [Pseudomonas aeruginosa LESB58]
          Length = 658

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 115/254 (45%), Gaps = 29/254 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242
           QV ++  I E+  DI   +G Q +I     G +K+  A+ G             K     
Sbjct: 360 QVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSIGTLLQSLESNKAPESI 419

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D ++ G+    SF  ++ AL   T    L+ P+L  +  Q A    G    ++T S +T
Sbjct: 420 PDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 478

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYR 352
            +       T+V   D GV L  TP +     + L I+ E+S  +      N  D+ + +
Sbjct: 479 NSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISALLPNAQQRNNTDLITSK 538

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP+LG LFR+++    +  + +
Sbjct: 539 -RSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLLGRLFRSTKDTHTKRNLMV 597

Query: 413 AATPFLVKPVAMRD 426
                 ++P  +RD
Sbjct: 598 -----FLRPTVVRD 606


>gi|160901128|ref|YP_001566710.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
 gi|160366712|gb|ABX38325.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
          Length = 787

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 33/217 (15%)

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           +GF  S+ G+++         F   F+   GD ++    +  + +      E A   R +
Sbjct: 514 LGFTQSVNGNTT-------LGFLANFLQNSGDANILSTPNLMTLDN-----EEA---RII 558

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
               +  ++G  AS ++GG     TV+     T+V   D G++L   P +   G + L +
Sbjct: 559 VGQNVPMVTGSYASNSTGG-----TVNP---FTTVERKDVGLMLRVRPQINENGTVKLAV 610

Query: 333 QTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
             EVS   E       G   + R  +++  VE   G  IVL GL+ D+  Q ++ IPLL 
Sbjct: 611 FQEVSSVDESTRKDTNGLTTNKRSIESNVLVE--DGNIIVLGGLIDDNYSQAEDRIPLLG 668

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            IP+LG LFRN+   R +T + +      ++PV MRD
Sbjct: 669 DIPVLGNLFRNTNRKRNKTNLMV-----FLRPVVMRD 700


>gi|83720377|ref|YP_440567.1| general secretion pathway protein D [Burkholderia thailandensis
           E264]
 gi|167621024|ref|ZP_02389655.1| general secretion pathway protein D [Burkholderia thailandensis
           Bt4]
 gi|83654202|gb|ABC38265.1| general secretion pathway protein D [Burkholderia thailandensis
           E264]
          Length = 744

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+L  FS  +  + L     + TL       + GQ+    +G    Y  ++S     +  
Sbjct: 483 GLLQYFSGVSDANVLSTPNLV-TLDNEEAKIVVGQNVPIPTGS---YSNLTSGNTNNAFN 538

Query: 309 THD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPS 364
           T+D    G+ LH  P +   G + L++ TE S  V   VN    P++  R   +TV   +
Sbjct: 539 TYDRRDVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADN 598

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +      ++PV +
Sbjct: 599 GEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVII 653

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
            D           + A+A   NR + I G
Sbjct: 654 TD----------RETAQAVTSNRYDYIQG 672


>gi|329848228|ref|ZP_08263256.1| general secretion pathway protein D [Asticcacaulis biprosthecum
           C19]
 gi|328843291|gb|EGF92860.1| general secretion pathway protein D [Asticcacaulis biprosthecum
           C19]
          Length = 617

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 36/272 (13%)

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
           ++N     +V L+  ++E+ R+   Q+  + SI   +     S+  D+  + ++  GD S
Sbjct: 330 IINAPEATRVRLQEVLSEIDRE-PAQVFIEASIVEVTLTKDLSYGVDW--EAIASNGDLS 386

Query: 247 VKGVLDR----------FSFE-------TVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           V     R          FS           + AL   + +R ++ P +  +    A    
Sbjct: 387 VSHFSTRSTGFGQIAPGFSINYLGNDISAAVTALSSQSKVRIVSAPKVATVENMPAVLQV 446

Query: 290 GGQH--LYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           G Q   + +T  S          SV   D GV+L  TP +    RI L +  EVS     
Sbjct: 447 GDQVPVVTQTAQSVVNGDAPVVNSVDYRDTGVMLKVTPRITGTNRILLEVSQEVSSVART 506

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             +G D P+   RK D+++ +P G  + L GL+     Q   GIP L  IP++G +F+  
Sbjct: 507 QTSGIDSPTINQRKLDSSLIVPEGTVVALGGLISSSDSQSDSGIPGLKDIPLIGGVFKGQ 566

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
             NR  TE+ +     L+K    R L  P D+
Sbjct: 567 SHNRNRTELIV-----LLK---ARILRSPSDY 590


>gi|330957039|gb|EGH57299.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 692

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 23/239 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGGK------FVSEGGDFSV 247
           QV ++  I E   D  K++G +     ++SG S  S     GG       FV  G   + 
Sbjct: 448 QVMIEARIVEANVDYDKELGVRWGGATNTSGSSNWSTGTAAGGSTANSSTFVDMGAANAT 507

Query: 248 KGV-----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            G+      +    +  L A+E+      +++P +     ++A    G +  Y+  SSS+
Sbjct: 508 SGIGLGFLTNNTMLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEVPYQE-SSSS 566

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKAD 357
           GAT+V+  +  + L  TP +    RI + ++    EP     V+GV     P  +  + +
Sbjct: 567 GATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYVNAVLGV-----PPIKKNEVN 621

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
             V +  G TIV+ G+  +   +  + +P L  +P LG LFR    +  ++E+ +  TP
Sbjct: 622 AKVLISDGETIVIGGVFSNTQSKSVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTP 680


>gi|192361327|ref|YP_001983786.1| general secretion pathway protein D [Cellvibrio japonicus Ueda107]
 gi|190687492|gb|ACE85170.1| General secretion pathway protein D [Cellvibrio japonicus Ueda107]
          Length = 681

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 14/177 (7%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGA---- 304
           +R  F  VL  ++ ++    L+ P+L       A  + G Q  ++T S S   TG     
Sbjct: 441 ERTDFLAVLKLMQSSSKTNILSTPSLLTTDNNQAVISVGRQVPFRTGSYSAVGTGGNSTI 500

Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
               T++   D G+ L  TP +     I L I+ EVS  +  V++ D      R+  T +
Sbjct: 501 GSPFTTINREDVGLKLEVTPHINEGDSIVLDIKQEVSS-LSDVSSEDGIITNKREIQTQI 559

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE--IFIAAT 415
               G TIVL GL+ D++Q  +  +P+L  IP+LG LFR+   ++ +T   +FI AT
Sbjct: 560 LSSDGETIVLGGLITDEVQTGERRVPVLGSIPVLGQLFRSQTSSKSKTNLLVFIRAT 616


>gi|307720788|ref|YP_003891928.1| pilus (MSHA type) biogenesis protein MshL [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978881|gb|ADN08916.1| pilus (MSHA type) biogenesis protein MshL [Sulfurimonas
           autotrophica DSM 16294]
          Length = 542

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 29/230 (12%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----GATSVTTHD-- 311
           V+  L+    + +++ P +  ++ Q A  T+G ++ YK +SS+      G  + TT +  
Sbjct: 317 VIKFLKTQGDVNSISNPKVLTLNNQPALITAGTEYFYKIISSTNQQGTGGGVAATTQNDT 376

Query: 312 -----YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAG-DMP-SYRVRKADTTV 360
                 GV+L  TP +     I L+I   +SE    +    N+G DMP     R+  + V
Sbjct: 377 VNSVFAGVLLTITPEISDDKTITLKINPSLSETTTDISQTSNSGRDMPPDLNRRQLSSVV 436

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV- 419
            +  G  I+L GL+          +P+L  IP+LG LF++    +   E+ I   P ++ 
Sbjct: 437 TVKDGNRIILGGLINSKNTSDTNQVPILGSIPVLGYLFKHEEIVKTVEELVIIIEPHIIH 496

Query: 420 ---KPVAMRDLSR---PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
                +++ DL      DD  ++E  +K     ++N+    K+  E EG+
Sbjct: 497 KEKDSISLSDLGYEGLSDDLLTLESASKEKKEVKLNQ----KDDEEKEGK 542


>gi|167582884|ref|ZP_02375758.1| general secretion pathway protein D [Burkholderia thailandensis
           TXDOH]
          Length = 744

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+L  FS  +  + L     + TL       + GQ+    +G    Y  ++S     +  
Sbjct: 483 GLLQYFSGVSDANVLSTPNLV-TLDNEEAKIVVGQNVPIPTGS---YSNLTSGNTNNAFN 538

Query: 309 THD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPS 364
           T+D    G+ LH  P +   G + L++ TE S  V   VN    P++  R   +TV   +
Sbjct: 539 TYDRRDVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADN 598

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +      ++PV +
Sbjct: 599 GEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVII 653

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
            D           + A+A   NR + I G
Sbjct: 654 TD----------RETAQAVTSNRYDYIQG 672


>gi|120602835|ref|YP_967235.1| type II and III secretion system protein [Desulfovibrio vulgaris
           DP4]
 gi|120563064|gb|ABM28808.1| type II and III secretion system protein [Desulfovibrio vulgaris
           DP4]
          Length = 524

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 112/265 (42%), Gaps = 42/265 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS---------------SGPSKSFAADFGG--K 237
           Q+ LK  I E  RD  + +G Q    G S               SGP+K      GG   
Sbjct: 253 QILLKAHIVEATRDTARDLGIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVP 312

Query: 238 FVSEGG--------DFSVK--------------GVLDRFSFETVLHALERATAIRTLAEP 275
            +  GG        +F V               G +     E  L AL+    +  L+ P
Sbjct: 313 VIPPGGLSGQGFGMNFPVNKAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSP 372

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +++ +  Q A FT  G+ +    +++ G   V   D  + L  TP V+    + L++Q +
Sbjct: 373 SISTLDNQMA-FTENGEKVPYVSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVK 431

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             E  +       P    ++ +TT+ +  G T+V++GL K+     ++G+P L  +  +G
Sbjct: 432 KDEVDLTRTVEGNPFIIKKQTETTLIVQDGETVVISGLTKERSSSRRQGLPYLQDVEGIG 491

Query: 396 ALFRN-SRFNREETEIFIAATPFLV 419
           ALF N S+ N+ E ++ I  TP ++
Sbjct: 492 ALFGNDSKANKLE-DVLIFITPAIL 515


>gi|85712761|ref|ZP_01043805.1| Type II secretory pathway [Idiomarina baltica OS145]
 gi|85693401|gb|EAQ31355.1| Type II secretory pathway [Idiomarina baltica OS145]
          Length = 560

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 105/252 (41%), Gaps = 33/252 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           QV L+  I EV       +G  +Q  I  +    S  F   F G   ++    +  GV  
Sbjct: 288 QVILEARIVEVT------LGDQYQQGIRWNELNMSGRFDFGFNGSVPNDIAAATADGVFG 341

Query: 252 ---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
              +   F   L  L+   +++ L+ P +TA + Q A    G    Y T  +S   T+VT
Sbjct: 342 LTFNSNRFTGFLELLQTQGSVQVLSNPRVTASNNQKAVIKIGEDEYYVTDVTSQTNTTVT 401

Query: 309 THDY------------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMP 349
                           G+ L  TP +   G + L +   V E         IG     +P
Sbjct: 402 QDALTSSNVDLTPFFSGISLDVTPQISDDGEVTLHVHPSVVETKEQEKVITIGDETLRLP 461

Query: 350 SYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             R  +R++DT V   SG  +VL GL+++   +  E +PLL  +P++G LF+N   +  +
Sbjct: 462 LARSNIRESDTIVRARSGEIVVLGGLMQNSTSENVEKVPLLGDLPLVGNLFKNKSNDASK 521

Query: 408 TEIFIAATPFLV 419
            E+ I   P ++
Sbjct: 522 KELVILIKPTVI 533


>gi|258593213|emb|CBE69552.1| exported protein of unknown function [NC10 bacterium 'Dutch
           sediment']
          Length = 726

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 19/195 (9%)

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           V+    F+    +D+  F  VL+ L   T +  LA P L   + + A+   G +    T 
Sbjct: 489 VAPPSGFTFTTFVDKEQFRLVLNNLASVTKVEVLANPHLLTANNKEANIQIGQEVPIPTG 548

Query: 299 SSSTGATSVTT-------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-- 349
           + S G + V          D G++L   P V     + L I+TE +       AG++P  
Sbjct: 549 TQSVGTSDVANVFSTFQRKDIGIILKIKPHVNEKRLVTLDIETENTS-----VAGEVPDA 603

Query: 350 -----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
                S+      T + +    ++V+ G+++ D  +   GIP LS IP+LG LFRN+  +
Sbjct: 604 LQGGASFNKTTTKTALVVQDSQSLVIGGIIRTDKSKGYSGIPFLSTIPLLGYLFRNTSED 663

Query: 405 REETEIFIAATPFLV 419
              TE+ I  TP ++
Sbjct: 664 LIRTELVILITPHVI 678


>gi|225850118|ref|YP_002730352.1| fimbrial assembly protein PilQ [Persephonella marina EX-H1]
 gi|225646446|gb|ACO04632.1| fimbrial assembly protein PilQ [Persephonella marina EX-H1]
          Length = 608

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 17/241 (7%)

Query: 195 QVTLKVTIAEV----RRDILKQIGFQHSI------TGSSSGPSKSFAADF--GGKFVSEG 242
           Q+ ++  I ++    +RD+  Q GF  S        G ++G +  +  DF  G   V +G
Sbjct: 367 QIAIEARIVQIESSYKRDLGIQWGFAASGGAGNIGYGVTTGTATGYMFDFPAGNVDVGKG 426

Query: 243 GDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              S+ G++     S +  L ALE+    R L+ P +  I G+ A  + G +  Y T  +
Sbjct: 427 ASMSI-GIVRGLTTSLDIQLSALEQIGKSRILSRPKVITIDGEGAEISQGIEVPYSTFGA 485

Query: 301 STGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           + GA          +L     P     G I + I+     P  G      P    +   +
Sbjct: 486 AGGAAIARVQFKKALLKLNVIPRTTLDGNIIMNIELTQDVPDFGRAVNGQPPINTKSITS 545

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V    G TIV+ G+L+   Q+ + G+P L  +P+ G LF+N   N    E+ I  TP +
Sbjct: 546 KVIAKDGTTIVIGGILEKTEQETENGVPGLRNVPLFGWLFKNKGINTTNKELLIFITPKI 605

Query: 419 V 419
           +
Sbjct: 606 I 606


>gi|225850524|ref|YP_002730758.1| putative pilus [Persephonella marina EX-H1]
 gi|225645353|gb|ACO03539.1| putative pilus [Persephonella marina EX-H1]
          Length = 524

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 198 LKVTIAEVRRDILKQI---------GFQHSITGSS-----SGPSKSFAADFGGKFVSEGG 243
           LK  ++EV++ +L +          G Q+ I  S+     +G S S          S  G
Sbjct: 272 LKKILSEVKKQVLIESKIVEVTLSDGMQYGINWSALLRNVAGASISLRQTLA--LPSSYG 329

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG--QHLYKTVSSS 301
           +  V G+     F  V++AL     I TL+ P +  ++GQ+A  +SG    +  K +++ 
Sbjct: 330 EVVVAGL----DFNAVINALSSVGRIETLSNPRIRVLNGQTALISSGVVVPYWEKQITTL 385

Query: 302 TGATSVTTHDY-------GVVLHFTPTV----LSPGRIGLRIQTEVSEPVIGVN--AGDM 348
              T   +  Y       GV+L  TP +    +    + +  + E ++ ++  N    + 
Sbjct: 386 GTTTVTQSVMYIRRSVLSGVLLGVTPYIEGDHIMINIVPVSTKIEGTKQLVENNEVVAEA 445

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P   +++A T +++  G  I++ G++  + +  +  IPLLS IP+ G LF+N +  RE+ 
Sbjct: 446 PVLNIKEAGTIIKVKDGDLIIIGGMINTEKRVEENKIPLLSNIPVFGNLFKNKKVYREKK 505

Query: 409 EIFIAATPFLVK 420
           E+ I   P ++K
Sbjct: 506 ELIIFLKPRIIK 517


>gi|319944755|ref|ZP_08019019.1| fimbrial assembly protein PilQ [Lautropia mirabilis ATCC 51599]
 gi|319742004|gb|EFV94427.1| fimbrial assembly protein PilQ [Lautropia mirabilis ATCC 51599]
          Length = 747

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 8/171 (4%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           L RF     L ALE     + ++ P +   S + A    G +  Y++ +SS GATSV+  
Sbjct: 576 LSRF-INLELSALEADQRGKVVSSPRVLTSSQRPAVIEQGTELPYQSATSS-GATSVSFR 633

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTI 368
              + L  TP +   G + L +  +VS   +G   NAG   +   R   T V +  GGT+
Sbjct: 634 KANLRLEVTPQITPEGNVILDV--DVSRDAVGQLTNAG--YAIDTRHVKTQVLVEDGGTV 689

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V+ G+ +   +   + +PLL  IP+LG LFR++    + TE+ +  TP +V
Sbjct: 690 VIGGIYEQFERNRTDKVPLLGDIPVLGYLFRSTTRTNDRTELLVFLTPRIV 740


>gi|304311962|ref|YP_003811560.1| Fimbrial type-IV assembly protein, outer membran secretin [gamma
           proteobacterium HdN1]
 gi|301797695|emb|CBL45917.1| Fimbrial type-IV assembly protein, outer membran secretin [gamma
           proteobacterium HdN1]
          Length = 710

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 18/198 (9%)

Query: 238 FVSEGGD--------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           F  +GGD        F  KG+LD       L ALE       ++ P +     Q A   S
Sbjct: 520 FSVQGGDASSLALGLFDDKGLLD-----IELSALESEGRADVVSTPKVLTADQQKAKVAS 574

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGD 347
           G +  Y+  SSS GAT+ +  +  + L  TP +   GRI + ++  V++  IG    A +
Sbjct: 575 GTEIPYQEASSS-GATTTSFKEAVLSLEATPQITPDGRIIMDLK--VNQDSIGDIDTASN 631

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P       +T+V + +G T+VL G+ + +  +     P L  +P+LG LFR +  ++ +
Sbjct: 632 IPIIDTNSVETSVIVDNGQTVVLGGVFRSEEIKSVAKTPFLGDLPVLGRLFRKNVSSQAK 691

Query: 408 TEIFIAATPFLVKPVAMR 425
           TE+ +  TP +V  V  +
Sbjct: 692 TELLVFITPKIVTDVVAK 709


>gi|148977866|ref|ZP_01814421.1| MSHA biogenesis protein MshL [Vibrionales bacterium SWAT-3]
 gi|145962935|gb|EDK28206.1| MSHA biogenesis protein MshL [Vibrionales bacterium SWAT-3]
          Length = 549

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 21/186 (11%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA--------- 304
           SFE VL  ++    +  L+ P +TA + Q A    G    Y T +SS+ G+         
Sbjct: 340 SFEAVLSFMDTQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSAVGSGDNANVAPE 399

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------DMPSYR--V 353
             +T    G+ L  TP +   G + L +     EV + V  +N G      ++P  +  +
Sbjct: 400 VELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEKEVKKLNLGSTTGVVELPLAKSSI 459

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R++D+ +    G  +V+ GL+K +   +   +P L  IP LG LFRN+    ++TE+ I 
Sbjct: 460 RESDSVIRARDGDVVVIGGLMKSNTSDVTSKVPFLGDIPALGHLFRNTNQLTQKTELVIL 519

Query: 414 ATPFLV 419
             P +V
Sbjct: 520 LKPTVV 525


>gi|255320952|ref|ZP_05362125.1| general secretion pathway protein D [Acinetobacter radioresistens
           SK82]
 gi|262379956|ref|ZP_06073111.1| general secretion pathway protein D [Acinetobacter radioresistens
           SH164]
 gi|255301916|gb|EET81160.1| general secretion pathway protein D [Acinetobacter radioresistens
           SK82]
 gi|262298150|gb|EEY86064.1| general secretion pathway protein D [Acinetobacter radioresistens
           SH164]
          Length = 751

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 121/278 (43%), Gaps = 37/278 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------KSFAADF--GGKFVSE 241
           QV ++  I EV  D   Q+G Q ++   SSG              S AA +  GG  ++ 
Sbjct: 389 QVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLVNFTNVGSSLASLAAGYLAGGSALAN 448

Query: 242 G-----------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                       GD+       R  +  ++ AL+  T    L+ P++  +  + A    G
Sbjct: 449 AASNLRGSSLLLGDYREGADGSRRLYGALIQALKDNTKSNLLSTPSIVTMDNEEAYIVVG 508

Query: 291 GQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342
               + T S +T A      T+V   D GV L   P +   G + L ++ EVS  +P  G
Sbjct: 509 QNVPFVTGSVTTNANGVNPYTTVERKDVGVTLKVIPHIGENGTVRLEVEQEVSNVQPNKG 568

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             A D+ + + R   T V    G T+VL GL+ D+    ++ +P L  IP +G LFR+  
Sbjct: 569 -QATDLVTSK-RAIKTAVLAEHGQTVVLGGLISDNSIYSRQAVPGLGAIPGIGRLFRSDS 626

Query: 403 FNREETEIFIAATPFLVKPVA-MRDLS--RPDDHYSVE 437
            + E+  + +   P +V   + +R L+  R D  YS++
Sbjct: 627 NSNEKRNLLVFIHPTIVGDASDVRRLTQRRYDQLYSLQ 664


>gi|9630755|ref|NP_047359.1| maturation protein [Enterobacteria phage If1]
 gi|6136220|sp|O80300|G4P_BPIF1 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|3676288|gb|AAC62158.1| maturation protein [Enterobacteria phage If1]
          Length = 429

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 11/180 (6%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S GG F   G+ +       L ALE ++    L+ P +  +SGQ  +FT+G    + T  
Sbjct: 244 STGGSF---GIFNGNILGLSLKALETSSKSTLLSMPRILTMSGQPGTFTAGQNVPFVTGR 300

Query: 300 SSTGATSVTT-------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
            +  A +V         HD G+ L   P V   G + + + T          A D+ +  
Sbjct: 301 VTGEAANVNNPFQTIERHDVGISLKVVPVVTPGGLLIMDVSTNADSISDSQTASDIIT-N 359

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   TTV+L SG T++L G++ +        +P +SKIP++GALF +   N  +  ++I
Sbjct: 360 TRSISTTVQLKSGQTVLLGGMVDNRESDSDSSVPWVSKIPLIGALFTSKSSNANKRTLYI 419


>gi|58091874|gb|AAW65366.1| gene IV protein [synthetic construct]
          Length = 437

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 117/273 (42%), Gaps = 39/273 (14%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD--ILKQIGFQHSI---------T 220
           G N    S S  +MN L           +T  +V RD  +++ + F+ S+          
Sbjct: 178 GNNSLLVSGSAAIMNAL--------ADFITSIDVARDQVLIQSLMFETSLVNGVDLSFAA 229

Query: 221 GSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           GS+SG     A  F     G    + GG F   G+ +       + A++  +  + ++ P
Sbjct: 230 GSASG--DKVAGGFNTSALGTALSTAGGSF---GIFNGNVLALSIQAVKNDSNSKVISTP 284

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTVLSPGR 327
            +   SGQ+  + S GQ++       TG          ++   D GV L  TP V+  G+
Sbjct: 285 RILTQSGQTG-YISVGQNVPFVTGKVTGEAANVNNPFQTIERRDVGVSLKVTPVVMGNGQ 343

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L I T+       + A D+ + + R   TTV++  G T++L GL+  +       +P 
Sbjct: 344 LVLTIDTKADSLTSQMTASDIITNQ-RHMQTTVQIKDGQTLLLGGLIDSNTTDGNRSVPW 402

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              +P++G LFR+   +  E  +F+  T  ++K
Sbjct: 403 FESVPVIGWLFRSHSDSHNERTMFVLLTAHVIK 435


>gi|85712729|ref|ZP_01043774.1| Type II secretory pathway, component PulD [Idiomarina baltica
           OS145]
 gi|85693461|gb|EAQ31414.1| Type II secretory pathway, component PulD [Idiomarina baltica
           OS145]
          Length = 695

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 18/190 (9%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------- 305
           +  V+ A+ + T    LA P++  +  + ASF  G     + V + TG+T          
Sbjct: 456 WAAVVQAVSQDTNSNILATPSIVTVDNEEASFLVG-----QEVPTITGSTLGNDNQSPFQ 510

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V   + G+ L  TP +     + + I+ EVS  + G  + D+   + R+  TTV    G
Sbjct: 511 TVDRQEIGIKLKVTPQINEGNAVQMVIEQEVSS-LSGATSVDVIVNK-RELKTTVMAEDG 568

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-M 424
            TIVL GL+ +D+Q+    IPLL  IP +G LF ++  + ++  + +   P +V+  + +
Sbjct: 569 ETIVLGGLIDEDVQESVSKIPLLGDIPFIGRLFSSTSTSTQKRNLMVFIRPTIVRNGSKL 628

Query: 425 RDLSRPDDHY 434
            D+S+   +Y
Sbjct: 629 SDISKQKYNY 638


>gi|119776501|ref|YP_929241.1| type IV pilus biogenesis protein PilQ [Shewanella amazonensis SB2B]
 gi|119769001|gb|ABM01572.1| type IV pilus biogenesis protein PilQ [Shewanella amazonensis SB2B]
          Length = 685

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+      +A P +T  S Q A++   G  +    +SS+G+
Sbjct: 506 FHVAKLADGTVLDMELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVSASSSGS 564

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           T+V      + L  TP +    R+   L I  +     +    G   +   ++  T V +
Sbjct: 565 TTVEFKKAVLSLRVTPQITPDNRVILDLEITQDSRGETVDTATGRAVAIDTQRIGTQVLV 624

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ I  TP +V
Sbjct: 625 DNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFVTPKIV 681


>gi|332527680|ref|ZP_08403723.1| general secretion pathway protein D [Rubrivivax benzoatilyticus
           JA2]
 gi|332112080|gb|EGJ12056.1| general secretion pathway protein D [Rubrivivax benzoatilyticus
           JA2]
          Length = 388

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 24/212 (11%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL----ERATAIRTLAEPTLTAISGQSAS 286
           AA      VS G   +V G+L R+     L AL    +  T    ++ P L  +  + A 
Sbjct: 111 AASGSASGVSLGEGLNV-GILRRYGGTYALGALANLLQSQTKTNIVSTPNLITLDNEEAK 169

Query: 287 FTSG-------GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE---- 335
              G       GQ+     ++++   ++   D G+ L   P +   G + + I  E    
Sbjct: 170 IVVGENVPFITGQYTNTGTATTSPFQTIERKDVGITLRIRPQIGESGTVRMTIYQEQSSV 229

Query: 336 VSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +S   +G  NAG  PS   R  ++ V +  G  IVL GL++D   + K  +PLL  IP L
Sbjct: 230 LSTATVGTTNAG--PSTTKRSIESQVVVEDGQIIVLGGLVQDSYVEEKSKVPLLGDIPGL 287

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           GALFR+    ++ T + +      ++PV MRD
Sbjct: 288 GALFRSESRTKKRTNLMV-----FLRPVVMRD 314


>gi|299771842|ref|YP_003733868.1| general secretion pathway protein D [Acinetobacter sp. DR1]
 gi|298701930|gb|ADI92495.1| general secretion pathway protein D [Acinetobacter sp. DR1]
          Length = 757

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 8/174 (4%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-- 310
           R ++  ++ AL+  T    L+ P++  +  + A    G    + T S +T +T +  +  
Sbjct: 476 RKAYGALIQALKSNTKSNLLSTPSIVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTT 535

Query: 311 ----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSG 365
               D GV L   P +   G + L ++ EVS        A D+ + + R   T V    G
Sbjct: 536 VERKDVGVTLKVVPHIGEGGTVRLEVEQEVSNVQTSKGQAADLITNK-RAIKTAVLAEHG 594

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T+VL GL+ DD++  ++GIP LS IP +G LFR+   +  +  + +   P +V
Sbjct: 595 QTVVLGGLVSDDVELSRQGIPGLSSIPYVGRLFRSDSRSNTKRNLLVFIHPTIV 648


>gi|37681131|ref|NP_935740.1| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016]
 gi|37199882|dbj|BAC95711.1| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016]
          Length = 547

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 112/269 (41%), Gaps = 31/269 (11%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++V   L I+ E    QV L+  I EV      Q G   S   +S G S S   +  G  
Sbjct: 255 REVRQFLGISQERMQRQVILEAKILEVTLSDGYQQGINWSNISASIGNSGSIVVNRPGST 314

Query: 239 VSEGGDF--SVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           V  G D   S+ G      +   SFE VL  +     +  L+ P +TA + Q A    G 
Sbjct: 315 VLPGLDAIGSLLGGQTNVTISDGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGN 374

Query: 292 QHLYKT-VSSSTG---------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSE 338
              Y T +SS+ G           ++T    G+ L  TP +   G + L +     EV E
Sbjct: 375 DQYYVTALSSNVGNDDKSKAVPEVTLTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEE 434

Query: 339 PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
               +N G         +    +R++D+ +    G  +V+ GL+K +  +    +P    
Sbjct: 435 ETKQLNLGGDFQNVTLPLAKSSIRESDSVIRARDGDVVVIGGLMKSNTIERVSKVPFFGD 494

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP LG LFRN+    ++TE+ I   P +V
Sbjct: 495 IPALGHLFRNTSNLTQKTELVILLKPTVV 523


>gi|238025716|ref|YP_002909947.1| general secretory pathway protein D [Burkholderia glumae BGR1]
 gi|237874910|gb|ACR27243.1| General secretory pathway protein D [Burkholderia glumae BGR1]
          Length = 765

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 16/179 (8%)

Query: 259 VLHALERATAIRTLAEPTLTAIS--------GQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +L A   ++    L+ P L  +         GQ+    +G      + +SS    +    
Sbjct: 488 LLQAFSGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIATGSYSNLTSGNSSNAFNTFDRQ 547

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGT 367
           D G+ LH  P +   G + L+I TE S  V       A  +P++  R   +TV   +G  
Sbjct: 548 DVGLTLHVKPQITEGGILKLQIYTEDSAVVPSTTSSTAVGVPTFSKRSIQSTVLCDNGEI 607

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +      ++PV + D
Sbjct: 608 IVLGGLMQDNYQVGNNKVPLLGDIPWIGQLFRSEGKQRQKTNLMV-----FLRPVILTD 661


>gi|21241466|ref|NP_641048.1| type II secretion system protein D [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106808|gb|AAM35584.1| type II secretion system protein D [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 692

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  ++ A++  T    L+ P++  +  + A    G Q +  T     GA       ++  
Sbjct: 453 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNPFRTIQR 511

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTI 368
            D GV L   P + + G I L I+ EVS     V+A      +  R+ +T V + +G  +
Sbjct: 512 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIV 571

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            L GLL  + +Q  E +PLL  +P LGALFR+   NR++T + +      ++P  +RD
Sbjct: 572 ALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMV-----FIRPTIIRD 624


>gi|262273882|ref|ZP_06051695.1| MSHA biogenesis protein MshL [Grimontia hollisae CIP 101886]
 gi|262222297|gb|EEY73609.1| MSHA biogenesis protein MshL [Grimontia hollisae CIP 101886]
          Length = 533

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG--------PSKSFAADFGGKFVSEGGDFS 246
           QV L+  + EV      Q G   S  G+S G        P    A D     +  GG  +
Sbjct: 261 QVILEAKVLEVTLSDGYQQGVNWSNIGASIGSGGINISRPETKLAGDMISNVI--GGQTN 318

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT- 305
           +   +   +F +V++ L+    +  L+ P +TA + Q A    GG   + T  SS+  + 
Sbjct: 319 I--TITDGNFSSVMNFLDTQGDVNVLSSPRVTAANNQKAVIKVGGDEYFVTDISSSDTSG 376

Query: 306 ---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDMP-- 349
                     +T    G++L  TP +     + L +   V      E  I +     P  
Sbjct: 377 DNSDSGPNIELTPFFSGILLDVTPQIDDDNGVLLHVHPAVVDVVTEEKTIQLGTSSEPYV 436

Query: 350 ----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
                  +R++D+ +   SG  +V+ GL+K   +++   +PLL  IP LG LFRN    +
Sbjct: 437 LPLAKTAIRESDSVIHARSGDVVVIGGLMKSSYEEVVSKVPLLGDIPGLGHLFRNVNRMK 496

Query: 406 EETEIFIAATPFLV 419
           ++TE+ I   P +V
Sbjct: 497 QKTELVILLQPSVV 510


>gi|196232588|ref|ZP_03131440.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
 gi|196223350|gb|EDY17868.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
          Length = 880

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 55/211 (26%)

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------- 297
           ++ GV     F+ V+ AL +   +  L+ P +T  SGQ A      +  Y T        
Sbjct: 617 AISGVFTDPQFQLVIRALNQKKGVDLLSSPKVTTKSGQRAVIEIIREFRYPTEFTPPQIP 676

Query: 298 -------------VSSSTGATSVT--------THDYGVVLHFTPTVLSPG---------- 326
                         +++TG+  VT        T + GV L   P +   G          
Sbjct: 677 QTFGNTGAGILGGGAATTGSFPVTPTTPTAFETRNTGVTLEVEPVIGPDGYTIDLNLVPQ 736

Query: 327 --------RIGLRIQTEVSEPVIGV--------NAGDMPSYRVRKADTTVELPSGGTIVL 370
                     G  I + V+ P+ GV        N  + P +  RK  T+V +  G T+VL
Sbjct: 737 VVEFEGFINYGSPITSSVTNPITGVSTQAVITPNVINQPIFSTRKVTTSVSVYDGSTVVL 796

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            GL+++D+Q++++ +P++  IPI+G LFR+S
Sbjct: 797 GGLIREDVQKVEDKVPIIGDIPIVGRLFRSS 827


>gi|308048042|ref|YP_003911608.1| type IV pilus secretin PilQ [Ferrimonas balearica DSM 9799]
 gi|307630232|gb|ADN74534.1| type IV pilus secretin PilQ [Ferrimonas balearica DSM 9799]
          Length = 681

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 82/179 (45%), Gaps = 7/179 (3%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALER      +A P LT  + Q  +F   G  +    S+S+GA
Sbjct: 502 FHVAKLGDGTLLDLELSALERENKGEIIASPRLTT-ANQYTAFIEQGTEIPFVQSTSSGA 560

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSV      + L  TP +    RI   L +  +     +    G   +   ++  T V  
Sbjct: 561 TSVEFKKAVLGLTVTPQITPDNRIVLDLTVTQDTRGETVQTATGPAVAIDTQRISTQVLA 620

Query: 363 PSGGTIVLAGLLKDDIQQLKE--GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G TIVL G+ +   QQL     +PLL  IP +G LFRNS+   E+ E+ I  TP +V
Sbjct: 621 QNGETIVLGGIFQQ--QQLNTVTKVPLLGDIPFVGVLFRNSQDFTEKKELLIFVTPKIV 677


>gi|254522160|ref|ZP_05134215.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
 gi|219719751|gb|EED38276.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
          Length = 733

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 85/189 (44%), Gaps = 15/189 (7%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSSTGATSVTTHDYG 313
           V+ AL++ T +R L  P++   +   A+   G +         T   ++  +SV   D G
Sbjct: 532 VVSALDKVTDVRLLQTPSVFVRNNAEATLNVGDKVPINTTTVNTGVGTSSYSSVQYIDTG 591

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           V+L   P V   G + L I  EVS      E          P    +K  T   + SG T
Sbjct: 592 VILKVRPRVTRDGTVFLDIVQEVSSASDVPETCNPTERNCNPRISTKKLSTEAAVQSGDT 651

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRD 426
           I+LAGL+ D       GIP LSKIP++GALF         +E+ +  TP +V+     R+
Sbjct: 652 IMLAGLITDSATDGSSGIPGLSKIPVVGALFGQKTRTSRRSEVIVLLTPTIVRNAQESRN 711

Query: 427 LSRPDDHYS 435
           L+   D YS
Sbjct: 712 LT---DEYS 717


>gi|222109862|ref|YP_002552126.1| general secretion pathway protein d [Acidovorax ebreus TPSY]
 gi|221729306|gb|ACM32126.1| general secretion pathway protein D [Acidovorax ebreus TPSY]
          Length = 781

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 8/152 (5%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           I G +  F +G    Y     S GA    T+V   D G++L   P +   G + L +  E
Sbjct: 552 IIGNNVPFVTGS---YANTGGSGGAVNPFTTVERKDVGLMLRVRPQINENGTVKLTMYQE 608

Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           VS+     ++  + PS   R  ++TV +  G  IV+ GLL+D+    ++ +P++  +P++
Sbjct: 609 VSKVAESTLSNANGPSTSKRSIESTVLVDDGSVIVIGGLLEDNYALNQDKVPVMGDLPVV 668

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           G LFRN +  R++T + +   P +++  A  D
Sbjct: 669 GGLFRNEKRTRQKTNLMVFLRPMVIRDSAASD 700


>gi|325521649|gb|EGD00419.1| general secretion pathway protein D [Burkholderia sp. TJI49]
          Length = 699

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 19/163 (11%)

Query: 295 YKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPS 350
           Y  ++S T + +  T+D    G+ LH  P +   G + L++ TE S       NA   PS
Sbjct: 538 YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVDTATTNAQTGPS 597

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R   +T+   +G  IVL GL++D        +PLL  IP +G LFR+    R++T +
Sbjct: 598 FTKRSIQSTILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNL 657

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
            +      ++PV + D           D A+A   NR + I G
Sbjct: 658 MV-----FLRPVIISD----------RDTAQAVTANRYDYIQG 685


>gi|46579684|ref|YP_010492.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449099|gb|AAS95751.1| bacterial type II/III secretion system protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233480|gb|ADP86334.1| type II and III secretion system protein [Desulfovibrio vulgaris
           RCH1]
          Length = 524

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 112/265 (42%), Gaps = 42/265 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS---------------SGPSKSFAADFGG--K 237
           Q+ LK  I E  RD  + +G Q    G S               SGP+K      GG   
Sbjct: 253 QILLKAHIVEATRDTARDLGIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVP 312

Query: 238 FVSEGG--------DFSVK--------------GVLDRFSFETVLHALERATAIRTLAEP 275
            +  GG        +F V               G +     E  L AL+    +  L+ P
Sbjct: 313 VIPPGGLSGQGFGMNFPVNKAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSP 372

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +++ +  Q A FT  G+ +    +++ G   V   D  + L  TP V+    + L++Q +
Sbjct: 373 SISTLDNQMA-FTENGEKVPYVSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVK 431

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             E  +       P    ++ +TT+ +  G T+V++GL K+     ++G+P L  +  +G
Sbjct: 432 KDEVDLTRTVEGNPFIIKKQTETTLIVQDGETVVISGLTKERSSTRRQGLPYLQDVEGIG 491

Query: 396 ALFRN-SRFNREETEIFIAATPFLV 419
           ALF N S+ N+ E ++ I  TP ++
Sbjct: 492 ALFGNDSKANKLE-DVLIFITPAIL 515


>gi|308535177|ref|YP_002137419.2| type II secretion system protein GspD [Geobacter bemidjiensis Bem]
 gi|308052522|gb|ACH37623.2| type II secretion system protein GspD, putative [Geobacter
           bemidjiensis Bem]
          Length = 640

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 114/250 (45%), Gaps = 18/250 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVLD 252
           QV ++  IAEV  +  K++G Q  + TG+S+G   +    D  G      G  ++ G L 
Sbjct: 357 QVFVQAMIAEVSANKAKELGLQWGVVTGASNGTLSTVGTFDPFGAVAGLTGTLTLAGQLG 416

Query: 253 RFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTG 303
                     F   L AL+   A+  L+ P +     + A    G     L  T  +STG
Sbjct: 417 ITPPDAGVALFPATLKALQSNGALNVLSTPNIMTSDNKEAEIFVGENVPFLSGTNLTSTG 476

Query: 304 AT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--RVRKADTT 359
            +  S+   D G++L   P +     I L I  E+S  V        P+     R A T+
Sbjct: 477 LSQQSIERKDTGIILKIKPQISEGEYIKLDIYQEISA-VKDFGTATNPNLGSTKRSAKTS 535

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V + +  T+++ GL++D  Q  +  IPLL  IP+LG LF+  +  R++T + I  TP ++
Sbjct: 536 VVVKNTDTVIIGGLIQDTDQVTESKIPLLGDIPLLGWLFKTKKTTRDKTNLLIMLTPRII 595

Query: 420 KPVAMRDLSR 429
           K    RD++ 
Sbjct: 596 KDA--RDMAE 603


>gi|54310371|ref|YP_131391.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
           SS9]
 gi|46914812|emb|CAG21589.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
           SS9]
          Length = 556

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 106/254 (41%), Gaps = 31/254 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSF-----AADFGGKFVSE--GGDFS 246
           QV L+  I EV      Q G   S IT S  G    F     +A  GG  +S   GG  +
Sbjct: 281 QVVLEAKIMEVTLSDGYQQGVNWSNITSSIGGTDIVFGRTGPSALPGGDAISALLGGQTN 340

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TG 303
           +   +   +FE VL  LE    +  L+ P +TA + Q A    GG   + T  S    +G
Sbjct: 341 L--TISDGNFEAVLSFLETQGDLNVLSSPRVTAANNQKAVIKVGGDQYFVTDISGGEVSG 398

Query: 304 ATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPV-----------IGVNA 345
             S +  D        G+ L  TP +   G + L +   V E V            GV  
Sbjct: 399 DNSTSAPDIELTPFFSGISLDVTPQIDDEGGVLLHVHPTVVEVVNETKEIDLGATFGVYK 458

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +    +R++D+ +   SG  +V+ GL+K  I      +P L  IP LG LFRN    +
Sbjct: 459 LPLAKSSIRESDSVIFARSGDVVVIGGLMKSAINDQVSKVPFLGDIPGLGHLFRNVNKVK 518

Query: 406 EETEIFIAATPFLV 419
            +TE+ I   P +V
Sbjct: 519 SKTELVILLKPTVV 532


>gi|134294193|ref|YP_001117928.1| general secretion pathway protein D [Burkholderia vietnamiensis G4]
 gi|134137350|gb|ABO53093.1| general secretion pathway protein D [Burkholderia vietnamiensis G4]
          Length = 774

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336
           + GQ+    +G    Y  ++S T + +  T+D    G+ LH  P +   G + L++ TE 
Sbjct: 526 VVGQNVPIATGS---YLNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTED 582

Query: 337 SEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           S  V G  +    P++  R   +T+   +G  IVL GL++D+ Q     +PLL  IP +G
Sbjct: 583 SAVVAGTTSAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 642

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LFR+    R +T + +   P ++
Sbjct: 643 QLFRSESKQRAKTNLMVFLRPVII 666


>gi|320155211|ref|YP_004187590.1| MSHA biogenesis protein MshL [Vibrio vulnificus MO6-24/O]
 gi|319930523|gb|ADV85387.1| MSHA biogenesis protein MshL [Vibrio vulnificus MO6-24/O]
          Length = 531

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 112/269 (41%), Gaps = 31/269 (11%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++V   L I+ E    QV L+  I EV      Q G   S   +S G S S   +  G  
Sbjct: 239 REVRQFLGISQERMQRQVILEAKILEVTLSDGYQQGINWSNISASIGNSGSIVVNRPGST 298

Query: 239 VSEGGDF--SVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           V  G D   S+ G      +   SFE VL  +     +  L+ P +TA + Q A    G 
Sbjct: 299 VLPGLDAIGSLLGGQTNVTISDGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGN 358

Query: 292 QHLYKT-VSSSTG---------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSE 338
              Y T +SS+ G           ++T    G+ L  TP +   G + L +     EV E
Sbjct: 359 DQYYVTALSSNVGNDDKSKAVPEVTLTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEE 418

Query: 339 PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
               +N G         +    +R++D+ +    G  +V+ GL+K +  +    +P    
Sbjct: 419 ETKQLNLGGDFQNVTLPLAKSSIRESDSVIRARDGDVVVIGGLMKSNTIERVSKVPFFGD 478

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP LG LFRN+    ++TE+ I   P +V
Sbjct: 479 IPALGHLFRNTSNLTQKTELVILLKPTVV 507


>gi|77919728|ref|YP_357543.1| type IV pilus biogenesis protein PilQ [Pelobacter carbinolicus DSM
           2380]
 gi|77545811|gb|ABA89373.1| type IV pilus biogenesis protein PilQ [Pelobacter carbinolicus DSM
           2380]
          Length = 874

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 6/168 (3%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +D+   +  L ALE++   R ++ P ++ ++G+ A    G +  Y +VS     T     
Sbjct: 707 VDKTVLDLRLAALEQSGHGRIVSTPRVSTLNGEEAEVAQGTEIPYLSVSDDGTKTEFKKA 766

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTI 368
           +    L  TP +   G + L I  E      G N G  + P+   ++A T V +  G T 
Sbjct: 767 ELS--LKVTPEINPDGSVILEI--EAKNDSRGANTGLSEAPAIDTKRATTKVLVKDGETT 822

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           V+ G+   D  +   G+P L  +PILG LF++   + E  E+ +  TP
Sbjct: 823 VIGGIFIQDKSESDSGVPWLMNVPILGHLFKSKSVSEERRELLVFITP 870


>gi|261254112|ref|ZP_05946685.1| type IV pilus biogenesis protein PilQ [Vibrio orientalis CIP
           102891]
 gi|260937503|gb|EEX93492.1| type IV pilus biogenesis protein PilQ [Vibrio orientalis CIP
           102891]
          Length = 563

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+R +    ++ P L   + + A    G +  Y   SSS+GATSV      + L   
Sbjct: 401 LSALQRESKAEVISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVV 459

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  ++    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 460 PQITPDNRLVLDLSVTQDRPGDIVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHS 519

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +    + +P+L  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 520 VTDAVDKVPMLGDLPLLGALFRRTYQKMGKSELLIFVTPKVV 561


>gi|207723669|ref|YP_002254067.1| type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum MolK2]
 gi|206588873|emb|CAQ35835.1| type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum MolK2]
          Length = 778

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 159/398 (39%), Gaps = 65/398 (16%)

Query: 51  SIGLNKVIILQVPVDVQD-VLVSDPTKADVVVHSPRTMYL----FGKNVGQANVILI--G 103
           + GLN +    V  D++  + VS+ T  D V      M L      K V  AN + I   
Sbjct: 213 TTGLNVIFDRDVRTDLKTTIFVSNATLEDTV-----DMILMQSQLAKKVMNANTVFIYPA 267

Query: 104 HDGKQMLNLDI------LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
              KQ    D+      L   D  H+E  L+  +    I  +  ++TV +     +I+ +
Sbjct: 268 TAAKQQEYQDLKVRTFQLSNTDAKHIEALLKSLLKIKEIVTDERANTVSIRATPESIRVA 327

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           +R +   +                           E +V L+V + EV RD L  +G   
Sbjct: 328 ERMIAAQDL-------------------------PEPEVMLEVEVLEVSRDRLTDLGIDW 362

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
             + +   PS   AA +G          +  G+    +F+         T    LA P +
Sbjct: 363 PNSFTLGTPSS--AATWGDLHHLTINRLTASGLSATANFKLT------DTDANLLASPRI 414

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
              + + A    G +    + SS         + S+   D G+ L   P V     +G++
Sbjct: 415 RTRNKEKAKILIGDKVPVISSSSVPSTSGPVYSQSIQYLDVGIKLEVEPQVYRDNDVGIK 474

Query: 332 IQTEVSEPVIGVNAGDMPS------YRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           +  EVS     +++ +  +      Y++  R A T++ L  G T VL GL++D+ +    
Sbjct: 475 MSLEVSNITQIISSSNAQTGLSSLAYQIGTRNASTSLRLKDGETQVLGGLIQDEDRDAAN 534

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            +P L ++P+LG LF N   + ++TEI +  TP +V+P
Sbjct: 535 KVPGLGQLPVLGRLFSNHNGDHKKTEIVLQITPHIVRP 572


>gi|192358819|ref|YP_001982858.1| MSHA biogenesis protein MshL [Cellvibrio japonicus Ueda107]
 gi|190684984|gb|ACE82662.1| MSHA biogenesis protein MshL [Cellvibrio japonicus Ueda107]
          Length = 578

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 148/337 (43%), Gaps = 58/337 (17%)

Query: 137 RVEMVSDTVVLHGMVRTI------QDSQRAVELSETFLSQSGRN-----QYANSSSKKVM 185
           RV+ ++ T   H + +TI      ++ +R+V +S     Q+G        +  SS +  +
Sbjct: 220 RVQTLNRTDFWHSLEKTILSIIGGKEGERSVMISP----QAGMVVVKALPHELSSVRDYL 275

Query: 186 NLLNIAGEDQVTLKVTIAEVRRD-----------ILKQIGFQHSITGSSSGPSKSFAADF 234
               ++ + QV L+  I EVR             I  Q+G+ +     +   S S   ++
Sbjct: 276 ERSELSAKRQVILETKILEVRLSEGFEAGVNWGAISGQLGYSYGSGRGTISASDSLEMNY 335

Query: 235 GGKF--------VSEGGDFSVK----GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           G  F        ++E  ++  K    G++       +L  LE   A++ L+ P ++ ++ 
Sbjct: 336 GPGFQMTDATRTITESSEYGGKDLFAGLVQVADITKLLSLLETQGAVQVLSSPRVSTVNN 395

Query: 283 QSASFTSGGQHLYKTVSSS---TGATSVTTHD--------YGVVLHFTPTVLSPGRIGLR 331
           Q A    G    + T  SS   T A ++T            G+ L  TP +   G + L 
Sbjct: 396 QKAVIRVGYDEYFVTGISSNTTTNAAAITNTPNIELSPFFSGISLDVTPQISEAGEVILH 455

Query: 332 IQ---TEVSEPVIGVNAGD----MP-SYR-VRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           I    +EV++ +     GD    +P + R +R++D+ V+  +G  IVL GL+ +  +Q  
Sbjct: 456 IHPIVSEVTDQLKVFTVGDENFSLPLALRGIRESDSIVKAANGQVIVLGGLMTESNRQTD 515

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              PLL  IPI+ +LFR    ++ +TE+ I   P +V
Sbjct: 516 GKRPLLGDIPIVNSLFRTKNKSKSKTELVILLRPIVV 552


>gi|9630770|ref|NP_047372.1| putative maturation protein [Vibrio phage fs2]
 gi|3702216|dbj|BAA33484.1| unnamed protein product [Vibrio phage fs2]
          Length = 500

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 21/188 (11%)

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F+ E GDF+            ++ A+  ++  R L+ P +  I  +   + + GQ++   
Sbjct: 270 FIFESGDFN-----------ALVKAISGSSDTRLLSRPNIL-IMDRERGYITVGQNVPFL 317

Query: 298 VSSST--GATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
           VS+ST  G TSV      D GV L  TP V+    I L I  E S       A D+ + +
Sbjct: 318 VSNSTTDGGTSVQRIERKDVGVSLEVTPHVMGDDVI-LVINQESSSVTDSTIAADIITNK 376

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN--REETEI 410
            R   TTV + SG TIVL GL+ D+ + ++ G+P+L   P++G LFR++     ++E  +
Sbjct: 377 -RTLMTTVAVKSGQTIVLGGLISDEKRNVESGVPVLKDTPLIGGLFRSTSTKNVQKELRV 435

Query: 411 FIAATPFL 418
            I +T F+
Sbjct: 436 VIKSTVFI 443


>gi|188535320|ref|YP_001909117.1| Putative type II secretion system protein [Erwinia tasmaniensis
           Et1/99]
 gi|188030362|emb|CAO98253.1| Putative type II secretion system protein [Erwinia tasmaniensis
           Et1/99]
          Length = 384

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 2/151 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G +  Y+  + ++G+T++   +  + +  TP V   GRI L+
Sbjct: 232 IASPRLFTSHQQTASIKQGTEIPYEVSTGNSGSTTMEFKEAMLGMEVTPVVQPNGRILLK 291

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +    + P   + +G+     + K   DT V L  G T+ L G+ +   +  +  +P L 
Sbjct: 292 LHISQNVPGRNMRSGENEVLTIDKQEIDTQVILKDGQTLALGGIFQQQSESGRTKVPWLG 351

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
            IP+LGALFR+    ++  E+ I  TP L++
Sbjct: 352 DIPLLGALFRHDVRQQKRRELVIFITPRLIR 382


>gi|330981434|gb|EGH79537.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 589

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHD 311
           + +  L ALE     + L+ P+L  ++ Q A    G        S +T     T++++ +
Sbjct: 385 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVE 444

Query: 312 Y---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
           Y   GV+L   P +   G + + IQ +VS      N  D    P    R   T V   SG
Sbjct: 445 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNANNSDANGNPRISTRSVATQVAAQSG 504

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++
Sbjct: 505 QTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI 558


>gi|269104067|ref|ZP_06156764.1| MSHA biogenesis protein MshL [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163965|gb|EEZ42461.1| MSHA biogenesis protein MshL [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 565

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 25/208 (12%)

Query: 235 GGKFVSE--GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           GG  +SE  GG  ++   +   +F  V+  L     +  L+ P +TA + Q A    GG 
Sbjct: 336 GGNDISELLGGQTNI--TITDGNFSAVMRFLSTQGDLNVLSSPRVTAANNQKAVIKVGGD 393

Query: 293 HLYKT-VSSS--TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ---TEVSEP 339
             + T VSSS  +G  S    D        G+ L  TP +   G + L +     +V++ 
Sbjct: 394 EYFVTNVSSSNVSGDNSTAAPDINLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVTDE 453

Query: 340 VIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           V  +  GD        +    +R++D+ +   SG  +V+ GL+K         +PLL  I
Sbjct: 454 VKSIELGDKFGTYQLPLAKSSIRESDSIIHAHSGDVVVIGGLMKTSTHDQVSKVPLLGDI 513

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P LG LFRN    +++TE+ I   P +V
Sbjct: 514 PGLGNLFRNINKVQQKTELVILLKPTVV 541


>gi|194291071|ref|YP_002006978.1| general secretory pathway protein d, type II secretion system
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224906|emb|CAQ70917.1| General Secretory Pathway protein D, type II secretion system
           [Cupriavidus taiwanensis LMG 19424]
          Length = 831

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 115/272 (42%), Gaps = 42/272 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAA-DFGG---------------- 236
           QV ++  I EV      ++G Q   +  SSSG +  FA  +FG                 
Sbjct: 445 QVYIESMIVEVTATQASELGIQWQGLISSSSGNNNVFAGTNFGTGGQNILNLTLAGALAD 504

Query: 237 -----------KFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQS 284
                      + V + G  ++ G+++R      +L AL    ++  L+ P L  +  + 
Sbjct: 505 SNRSAGIVAAQQLVPDIGGLNL-GIVNRAMGLGALLRALGTNGSVNLLSTPNLITLENEE 563

Query: 285 ASFTSGGQHLYKTVSS---STGATSVTT------HDYGVVLHFTPTVLSPGRIGLRIQTE 335
           A    G Q++  T  S   + GA SVT        D G+ L   P +   G + ++I  E
Sbjct: 564 AKILIG-QNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQE 622

Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            S  V    N    P+  VR  +T V +  G  IVL GL++D+     + +PLL  IP +
Sbjct: 623 SSNVVQATANLIQGPTTNVRSIETNVLVDDGQIIVLGGLIEDNYGDGVQKVPLLGDIPWI 682

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           G LFR    NR +T + +   P++++     D
Sbjct: 683 GGLFRYENKNRSKTNLLVFLRPYVMRTAGATD 714


>gi|9626242|ref|NP_040579.1| G IV protein [Enterobacteria phage Ike]
 gi|138049|sp|P03667|G4P_BPIKE RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|14956|emb|CAA26076.1| unnamed protein product [Enterobacteria phage Ike]
          Length = 437

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 117/273 (42%), Gaps = 39/273 (14%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD--ILKQIGFQHSI---------T 220
           G N    S S  +MN L           +T  +V RD  +++ + F+ S+          
Sbjct: 178 GNNSLLVSGSAAIMNAL--------ADFITSIDVARDQVLIQSLMFETSLVNGVDLSFAA 229

Query: 221 GSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           GS+SG     A  F     G    + GG F   G+ +       + A++  +  + ++ P
Sbjct: 230 GSASG--DKVAGGFNTSALGTALSTAGGSF---GIFNGNVLALSIQAVKNDSNSKVISTP 284

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTVLSPGR 327
            +   SGQ+  + S GQ++       TG          ++   D GV L  TP V+  G+
Sbjct: 285 RILTQSGQTG-YISVGQNVPFVTGKVTGEAANVNNPFQTIERRDVGVSLKVTPVVMGNGQ 343

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L I T+       + A D+ + + R   TTV++  G T++L GL+  +       +P 
Sbjct: 344 LVLTIDTKADSLTSQMTASDIITNQ-RHMQTTVQIKDGQTLLLGGLIDSNTTDGNRSVPW 402

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              +P++G LFR+   +  E  +F+  T  ++K
Sbjct: 403 FESVPVIGWLFRSHSDSHNERTMFVLLTAHVIK 435


>gi|330972847|gb|EGH72913.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 775

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSS-TGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G      Q    T SS+ T  +SV 
Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNSSTDTTLSSVE 630

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS       G +A   P    R   T V   SG
Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTDTTGNDANGNPRISTRSVATQVAAQSG 690

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++
Sbjct: 691 QTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKNRTELIVLITPRVI 744


>gi|313199856|ref|YP_004038514.1| pilus (msha type) biogenesis protein mshl [Methylovorus sp. MP688]
 gi|312439172|gb|ADQ83278.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. MP688]
          Length = 603

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 24/185 (12%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGAT---SVTTH 310
           L  L++    + L+ P L  ++ Q+A        +Y T+ S      +TG+T   SVTT 
Sbjct: 389 LRLLQQFGNTKVLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGLTTGSTNLQSVTTT 448

Query: 311 D----YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRK 355
                 GVV+  TP +   G++ + ++  +S  V  VN  +           +P  +VR+
Sbjct: 449 PNTVPVGVVMSVTPQINDLGQVNINVRPTISRVVSYVNDPNPQLANANVISRIPQIQVRE 508

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            ++ + + SG T VL GL++D+IQQ  + +P +SKIP  G LF        +TE+ I   
Sbjct: 509 LESVLRVNSGNTAVLGGLMQDNIQQASDRVPEVSKIPFFGKLFTARSDFTIKTELVIFLR 568

Query: 416 PFLVK 420
           P +++
Sbjct: 569 PIVIQ 573


>gi|238897480|ref|YP_002923157.1| putative protein exporter, transport across outer membrane (General
           Secretory Pathway) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465235|gb|ACQ67009.1| putative protein exporter, transport across outer membrane (General
           Secretory Pathway) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 687

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310
           ++ ++ A++  +++  L+ P++T +  Q ASF  G      T S++    +     V   
Sbjct: 458 WQALVQAVKNDSSVNVLSTPSITTLDNQEASFMVGEDVPVLTGSAANANNTNPFNTVERR 517

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
             GV+L  TP +     + L I+ EVS+ + G    D+  +  RK  TTV    G  IVL
Sbjct: 518 KIGVMLKVTPQINEGNTVQLLIEQEVSK-IQGETKLDI-KFAERKLKTTVLADDGQLIVL 575

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GLL ++  +    +P+L  IPILG LF+++   + +  + I      ++P  +RD
Sbjct: 576 GGLLDEESGESVSKVPVLGDIPILGHLFKSTVNKKTKRNLMI-----FIRPTILRD 626


>gi|332994686|gb|AEF04741.1| putative type IV pilus biogenesis protein PilQ [Alteromonas sp.
           SN2]
          Length = 586

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 5/181 (2%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F +  ++D    +  L ALE       +A P +T  + Q A    G +  Y   +SS GA
Sbjct: 407 FQIASLVDGTILDLELSALESENKGEIIASPRITVANQQEAYIEQGTEIPYVQATSS-GA 465

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSV      + L  TP +    RI   L +  +     +  + GD  +   ++  T V +
Sbjct: 466 TSVEFKKAVLSLRVTPQITPDNRIILDLVVTQDTRGETVSTSTGDAVAIDTQEIKTQVLV 525

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV--K 420
            +G TIVL G+ +         +PL   +P LG LFRN+   +E+ E+ I  TP ++  K
Sbjct: 526 ENGETIVLGGIFQQTSTDSVSKVPLFGDLPFLGVLFRNTSEFQEKRELLIFVTPKIITEK 585

Query: 421 P 421
           P
Sbjct: 586 P 586


>gi|121593092|ref|YP_984988.1| general secretion pathway protein D [Acidovorax sp. JS42]
 gi|120605172|gb|ABM40912.1| general secretion pathway protein D [Acidovorax sp. JS42]
          Length = 781

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 8/152 (5%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           I G +  F +G    Y     S GA    T+V   D G++L   P +   G + L +  E
Sbjct: 552 IIGNNVPFVTGS---YANTGGSGGAVNPFTTVERKDVGLMLRVRPQINENGTVKLTMYQE 608

Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           VS+     ++  + PS   R  ++TV +  G  IV+ GLL+D+    ++ +P++  +P++
Sbjct: 609 VSKVAESTLSNANGPSTSKRSIESTVLVDDGSVIVIGGLLEDNYALGQDKVPVMGDLPVV 668

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           G LFRN +  R++T + +   P +++  A  D
Sbjct: 669 GGLFRNEKRTRQKTNLMVFLRPMVIRDSATSD 700


>gi|163781745|ref|ZP_02176745.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882965|gb|EDP76469.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1]
          Length = 663

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 117/271 (43%), Gaps = 29/271 (10%)

Query: 176 YANSSSKKVMNLLNIAGED----QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---- 227
           YA  S  + +  L I+G D    QV +  TI E     L  IG +  I G   G S    
Sbjct: 353 YATKSEYEGIRSL-ISGLDVRRKQVLIAATIVEASTKSLLDIGVRWQILGKRGGASFRGT 411

Query: 228 ------KSFAAD--FGGKFVSEGGDFSVKGVLDRFSFETVLHAL-ERATAIRTLAEPTLT 278
                  SFA+     G F   G   +V      F    +L +L E  +    ++ P + 
Sbjct: 412 SLSNIYSSFASGNFLMGVFSDVGRTVTVGDATFFFPDLVLLFSLLETGSGFNIISNPRVL 471

Query: 279 AISGQSASFTSGGQHLY-KTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQT 334
            +  Q A    G    Y + V        + T+DY   G+ L+ TP + S   + L I  
Sbjct: 472 TLDNQPAIIKVGQVVPYAEGVKFDINGQPIITYDYKEVGLELNVTPRI-SGDNLRLTIGL 530

Query: 335 EVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            + E +      IG  +  +P    R+ ++ V + +G T++L GL+     +  EG+P L
Sbjct: 531 NLEEIIDFVTNEIGATSYTVPVTSNREVNSDVVIENGQTVILGGLVSTKTLKTMEGVPGL 590

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +IPILG LFR     +++T +FI  TP++V
Sbjct: 591 WRIPILGRLFRRDVKQKDKTTLFIFITPYVV 621


>gi|182413440|ref|YP_001818506.1| type II and III secretion system protein [Opitutus terrae PB90-1]
 gi|177840654|gb|ACB74906.1| type II and III secretion system protein [Opitutus terrae PB90-1]
          Length = 673

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 107/250 (42%), Gaps = 27/250 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
           QV ++V IAEV  D   + G         +  GSS G   +   +F GK    G D S +
Sbjct: 392 QVRIEVIIAEVTLDDSNKTGLSALNLTVATPQGSSQG---THITNFAGKVA--GWDIS-Q 445

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSSTG 303
           GV++  +F+  L      + ++ L+ PT+     + A    G        +Y T   ST 
Sbjct: 446 GVVNPLAFQAALGDAGTRSNVKILSAPTIVTTHNKEAQILVGESLPIITGIYTTAVGSTT 505

Query: 304 AT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV 353
            T         VT  D  + L  TP +   G I L+I  +V + V  I +N  D P    
Sbjct: 506 PTEPGFAQNQQVTYKDIAIDLKVTPLIGDDGSIQLKIDQKVDDVVRTISINNSDQPVIGR 565

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+A + + +  G  +VL GL +    + +  +  L +IPIL  LF     +   TE+ + 
Sbjct: 566 RQATSFINVSDGQIVVLGGLQRTANTRGRNKLGFLVEIPILSHLFGARTNSVRRTELLLF 625

Query: 414 ATPFLVKPVA 423
             P ++ P A
Sbjct: 626 IRPHVIAPDA 635


>gi|152989153|ref|YP_001346800.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
 gi|150964311|gb|ABR86336.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
          Length = 634

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 5/148 (3%)

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV- 340
           GQ+  F +G  +   +  +S   T+V   D G+ L  TP +     + L+++ E SE   
Sbjct: 440 GQNVPFQTG-SYTTDSAGASNPFTTVERKDVGITLKVTPHINEGDTLRLKVEQESSELAS 498

Query: 341 --IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G++  D+ + + R   +T+    G  IV+ GL+KD+++     +PLL  IP+LG LF
Sbjct: 499 APAGISTSDVITNK-RSVKSTILADDGQIIVIGGLIKDNVKTQVSKVPLLGSIPLLGRLF 557

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRD 426
           R+++   E+T + +   P L++  A  D
Sbjct: 558 RSTKDVNEKTNLMVFLRPTLLRNTANAD 585


>gi|114564903|ref|YP_752417.1| pilus (MSHA type) biogenesis protein MshL [Shewanella frigidimarina
           NCIMB 400]
 gi|114336196|gb|ABI73578.1| pilus (MSHA type) biogenesis protein MshL [Shewanella frigidimarina
           NCIMB 400]
          Length = 556

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 125/279 (44%), Gaps = 29/279 (10%)

Query: 182 KKVMNLLNIAG---EDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGK 237
           +++ + L IA    + QV L+  I EV      Q G Q  ++ G +   +  F+    G+
Sbjct: 270 RQIRSFLQIAESHLQRQVILEAKIIEVTLSDGYQQGIQWENVLGHAGSTNIDFSTS-AGQ 328

Query: 238 FVSEGGDFSVKGVLD-RFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            +S     ++ GV    F+   F T+++ L+    +  L+ P +TA + Q A    G   
Sbjct: 329 GLSNAITSAIGGVTSINFTGSDFSTIINLLDTQGDVDVLSSPRVTASNNQKAVIKVGNDE 388

Query: 294 LYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ-------TEV 336
            + T  SST   G T VTT          G+ L  TP +   G + L +        ++ 
Sbjct: 389 YFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDEYGNVILHVHPSVIDVTSQT 448

Query: 337 SEPVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            E  I  +  ++P     +R++DT +   SG  +V+ GL+K +  +    +PLL  IP L
Sbjct: 449 KEIKISDSTLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENIETVSKVPLLGDIPFL 508

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD-LSRPDD 432
           G  F +   ++++TE+ I   P +V     +D L R  D
Sbjct: 509 GEAFTSRTKSKKKTELIIMLKPTVVGGDTWKDELKRSQD 547


>gi|119503108|ref|ZP_01625193.1| general secretory pathway protein D precursor [marine gamma
           proteobacterium HTCC2080]
 gi|119461454|gb|EAW42544.1| general secretory pathway protein D precursor [marine gamma
           proteobacterium HTCC2080]
          Length = 743

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 107/234 (45%), Gaps = 13/234 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-FAADFGGKFVSEGGDFSV----KG 249
           QV ++ +I EV  +   + G + +      G   S   A   G+F   G +  V    KG
Sbjct: 483 QVLIEASIVEVSLNDQLKYGLEWTFNNQIGGSDYSGIGAISDGEFNVAGAEGPVAQLLKG 542

Query: 250 VLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
            L  F +     VL+AL   + +  ++ P++  +    A+   G Q    + S+ T    
Sbjct: 543 QLCSFKWCDYVAVLNALATESLVNVISTPSVMVLDNNVATINVGDQVPINSGSTITNGGN 602

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
              +++  D GV L   P+V + G + L +   V++ V  ++      +  R  ++ V +
Sbjct: 603 TIQNISYKDTGVQLTVRPSVNAGGLVTLDVLQTVTD-VGNIDVTGNRRFLERSIESRVAV 661

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            SG ++VL GL++++    + G+P   K PI+G LF  +   R+ TE+ +  TP
Sbjct: 662 RSGESVVLGGLIRENAANNENGVPWFYKAPIIGPLFGTTEKKRDRTELLVIITP 715


>gi|45657443|ref|YP_001529.1| general secretory pathway protein D [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|294828092|ref|NP_712556.2| type II secretory pathway component protein D [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45600682|gb|AAS70166.1| general secretory pathway protein D [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|293385940|gb|AAN49574.2| type II secretory pathway component protein D [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 596

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 19/256 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++ +L+ +   QV L+V I E+    L   G      G + G   S  +       S 
Sbjct: 303 RKIIKVLD-SARKQVLLEVLIVELTSSDLNDFGIDWRYKGEAFGQFNSGLSKEANIINSN 361

Query: 242 GGDFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G        L  FS             +L A +       L+ P +  +  Q A  + G 
Sbjct: 362 GQVNPNINTLSGFSLGFLKAGSEQIIGILSANQGNENFNVLSAPQVLTVDNQEAEISVGQ 421

Query: 292 QHLYKTVSSSTG-----ATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               +T S + G     A +V  ++Y   G+ L FTP V    +I L +  E+       
Sbjct: 422 DVPVRTQSRNAGTGGTNAVTVDNYEYRPTGIKLKFTPHVNKNNKITLELFQEIKNIAEIA 481

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            AG  P++  R+  T++ + +  +IV+ GL+ +D Q+    IP L  IP LG LF+ +  
Sbjct: 482 LAGGNPTFNRREIKTSISIENTQSIVIGGLISNDKQKRIIKIPFLGDIPYLGHLFKRTTE 541

Query: 404 NREETEIFIAATPFLV 419
             ++T + +  TP ++
Sbjct: 542 KIKKTNLMVFITPHIL 557


>gi|149911345|ref|ZP_01899965.1| putative type II secretory pathway, component EpsD [Moritella sp.
           PE36]
 gi|149805585|gb|EDM65588.1| putative type II secretory pathway, component EpsD [Moritella sp.
           PE36]
          Length = 699

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 9/168 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
           SF  ++ A    +    LA P++  +  Q ASF  G +    T SS++        +V  
Sbjct: 446 SFGAIIQASANDSNSNILATPSIMTLDNQEASFIVGEEVPVITGSSASSGNDNPFQTVER 505

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            + G+ L  TP +     + L I+ EVS+ V+G  + D+ ++  R+ +TT+   SG T+V
Sbjct: 506 REVGIKLTVTPQINEGDAVQLTIEQEVSQ-VLGSTSVDV-TFAKRQVNTTILADSGQTVV 563

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAAT 415
           + GLL + + +    +P L  IP +G LF+  +S   +    IFI AT
Sbjct: 564 IGGLLDEQVIESVSKVPWLGDIPWIGNLFKSTSSSTKKRNLMIFIKAT 611


>gi|239996578|ref|ZP_04717102.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonas macleodii ATCC 27126]
          Length = 590

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 117/261 (44%), Gaps = 24/261 (9%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---------HSITGSSSG------ 225
           ++K +N L+I  + QV ++  +  V  D+ +Q+G +         + ++GS  G      
Sbjct: 328 ARKTINALDIPVK-QVLIESRMVTVLDDVDEQLGVRWGFSDRQDDNGVSGSLEGADTIAG 386

Query: 226 ---PSKSFAADFGGKFVSEGGD--FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
              PS     +      S  G   F +  ++D    +  L ALE       +A P +T +
Sbjct: 387 GIVPSIDNRLNVNLPVTSAAGSIGFQIASLVDGTILDLELSALESENKGEIIASPRIT-V 445

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSE 338
           + Q  ++   G  +    ++S+GATSV      + L  TP +    RI   L +  +   
Sbjct: 446 ANQHEAYIEQGTEIPYVQATSSGATSVEFKKAVLSLKVTPHITPDNRIILDLVVTQDTRG 505

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             +  + G+  +   ++  T V + +G TIVL G+ +         +PL   +P++GALF
Sbjct: 506 ETVSTSTGEAVAIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGDLPVVGALF 565

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RNS   +++ E+ I  TP +V
Sbjct: 566 RNSSQLQQKRELLIFVTPKIV 586


>gi|254251012|ref|ZP_04944330.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
 gi|124893621|gb|EAY67501.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
          Length = 780

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 9/157 (5%)

Query: 272 LAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHD---YGVVLHFTPTVL 323
           L+ P L  +  + A    G   L     Y  ++S T + +  T+D    G+ LH  P + 
Sbjct: 515 LSTPNLITLDNEEAKIVVGQNVLIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQIT 574

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             G + L++ TE S  V    +    P++  R   +T+   +G  IVL GL++D+ Q   
Sbjct: 575 DGGILKLQLYTEDSAVVPSTTSSQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSN 634

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 635 SKVPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 671


>gi|11559475|dbj|BAB18788.1| GspD [Burkholderia cepacia]
          Length = 783

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 12/153 (7%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336
           + GQ+    +G    Y  ++S T + +  T+D    G+ LH  P +   G + L++ TE 
Sbjct: 535 VVGQNVPIATGS---YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTED 591

Query: 337 SEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           S  V G  N+   P++  R   +T+   +G  IVL GL++D+ Q     +PLL  IP +G
Sbjct: 592 SAVVNGTTNSQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 651

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
            LFR+    R +T + +      ++PV + D S
Sbjct: 652 QLFRSESKVRAKTNLMV-----FLRPVIISDRS 679


>gi|253997792|ref|YP_003049855.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. SIP3-4]
 gi|253984471|gb|ACT49328.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. SIP3-4]
          Length = 604

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 24/185 (12%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGAT---SVTTH 310
           L  L++    + L+ P L  ++ Q+A        +Y T+ S      +TG+T   SVTT 
Sbjct: 390 LRLLQQFGNTKVLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGLTTGSTNLQSVTTT 449

Query: 311 D----YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRK 355
                 GVV+  TP +   G++ + ++  +S  V  VN  +           +P  +VR+
Sbjct: 450 PNTVPVGVVMSVTPQINDLGQVNINVRPTISRVVSYVNDPNPQLANANVISRIPQIQVRE 509

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            ++ + + SG T VL GL++D+IQQ  + +P +SKIP  G LF        +TE+ I   
Sbjct: 510 LESVLRVNSGNTAVLGGLMQDNIQQASDRVPEVSKIPFFGKLFTARSDFTIKTELVIFLR 569

Query: 416 PFLVK 420
           P +++
Sbjct: 570 PIVIQ 574


>gi|307132897|ref|YP_003884913.1| putative fimbrial transporter [Dickeya dadantii 3937]
 gi|306530426|gb|ADN00357.1| predicted fimbrial transporter [Dickeya dadantii 3937]
          Length = 417

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 7/166 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +  + +  T
Sbjct: 246 LMALEQENEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 305

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +L  G+I L +    + P   +  G   ++ +   ++  T V +  G TIVL G+ + 
Sbjct: 306 PRILHGGQITLNLLISQNMPGRAIKQGEGSEILAIDKQEIQTQVTVLDGETIVLGGIFQQ 365

Query: 377 DIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAATPFLVK 420
              Q +  +P LS +P +G  FR  N +  R E  IFI  TP L++
Sbjct: 366 QKNQGERQVPGLSALPGIGQWFRSGNQQHTRRELVIFI--TPTLIQ 409


>gi|292489895|ref|YP_003532785.1| protein transport protein hofQ [Erwinia amylovora CFBP1430]
 gi|291555332|emb|CBA23681.1| Protein transport protein hofQ precursor [Erwinia amylovora
           CFBP1430]
 gi|312174079|emb|CBX82332.1| Protein transport protein hofQ precursor [Erwinia amylovora ATCC
           BAA-2158]
          Length = 414

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 2/151 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G +  Y+  + ++G+T++   +  + +  TP V S GRI L+
Sbjct: 262 IASPRLFTSHQQTASIKQGTEIPYEVSTGNSGSTTMEFKEAMLAMEVTPLVQSNGRILLK 321

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +    + P   + +G+     + K   DT V L  G T+ L G+ +         +P L 
Sbjct: 322 LHISQNVPGRNMRSGENEVLTIDKQEIDTQVMLKDGQTLALGGIFQQQSATGSTRVPWLG 381

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
            IP+LG+LFR+    ++  E+ I  TP LV+
Sbjct: 382 DIPLLGSLFRHDVRQQKRRELVIFITPRLVR 412


>gi|292900933|ref|YP_003540302.1| protein transport protein [Erwinia amylovora ATCC 49946]
 gi|291200781|emb|CBJ47915.1| protein transport protein [Erwinia amylovora ATCC 49946]
          Length = 406

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 2/151 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G +  Y+  + ++G+T++   +  + +  TP V S GRI L+
Sbjct: 254 IASPRLFTSHQQTASIKQGTEIPYEVSTGNSGSTTMEFKEAMLAMEVTPLVQSNGRILLK 313

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +    + P   + +G+     + K   DT V L  G T+ L G+ +         +P L 
Sbjct: 314 LHISQNVPGRNMRSGENEVLTIDKQEIDTQVMLKDGQTLALGGIFQQQSATGSTRVPWLG 373

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
            IP+LG+LFR+    ++  E+ I  TP LV+
Sbjct: 374 DIPLLGSLFRHDVRQQKRRELVIFITPRLVR 404


>gi|197117937|ref|YP_002138364.1| type IV pilus secretin lipoprotein PilQ [Geobacter bemidjiensis
           Bem]
 gi|197087297|gb|ACH38568.1| type IV pilus secretin lipoprotein PilQ [Geobacter bemidjiensis
           Bem]
          Length = 946

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 21/259 (8%)

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR----RDILKQIGFQHSITGSSSGPSKSF 230
           Q A +  K ++  L+ A E QV ++  I E      RD+  Q G  +    +S     S 
Sbjct: 694 QTALNDMKALLKTLD-APEKQVMIEARIVEATSTFTRDLGVQWGLSYRDGSASVAGINSV 752

Query: 231 AADFGG----------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
              FGG               G   S   +      +  L A      ++ ++ P +  +
Sbjct: 753 DTGFGGVVSAAGPGSSGAGGLGLGMSFGKLTSNIKLDMRLAAAATIGQVKIISTPKVVTL 812

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           + ++A  + G    Y+T S+    T     +  + L  TP + + G + ++I+   + P 
Sbjct: 813 NNKAAKISQGQSIPYQTTSAEGTKTEFV--EAALTLEVTPHITADGSVSMKIKASNNSP- 869

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                G  P    ++A T + + +G T V+ G+  D   +   G+P LS IP+LG LF++
Sbjct: 870 ---GTGSPPPINKKEATTELVVSNGDTTVIGGIYVDSDTESDTGVPFLSDIPLLGWLFKS 926

Query: 401 SRFNREETEIFIAATPFLV 419
           +   + +TE+ I  TP +V
Sbjct: 927 NSKQKTKTELLIFITPKIV 945


>gi|34496284|ref|NP_900499.1| type 4 fimbrial biogenesis protein PilQ [Chromobacterium violaceum
           ATCC 12472]
 gi|34102137|gb|AAQ58504.1| type 4 fimbrial biogenesis protein PilQ [Chromobacterium violaceum
           ATCC 12472]
          Length = 697

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A++     R ++ P +     Q AS   G +  Y+  SSS GATSV+     + L+  
Sbjct: 531 LQAMQAEDKGRIISSPRVMTADRQEASIEQGTEIPYQEASSS-GATSVSFKKAVLRLNVK 589

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + + I                PS    K  T V + +GGT+VL G+ +  + 
Sbjct: 590 PQITPDNHVIMDITVNKDSANFEKTVNGTPSLSTEKIITQVLVENGGTVVLGGIYQQQLN 649

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +   +P L  IP+LGALFR+S+   + +E+ I  TP ++
Sbjct: 650 DVINKVPFLGDIPLLGALFRSSQKIDKRSELLIFITPKVI 689


>gi|57242551|ref|ZP_00370489.1| general secretory pathway protein D [Campylobacter upsaliensis
           RM3195]
 gi|57016836|gb|EAL53619.1| general secretory pathway protein D [Campylobacter upsaliensis
           RM3195]
          Length = 468

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 24/201 (11%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+    +F +VL+ L +    + L+ P L A++ Q A  + G    Y+   SS G  + T
Sbjct: 264 GLRANINFNSVLNFLSQNGKTQVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 323

Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------ 353
           T      +Y    G++L   P +    +I LRI   +S+     +     S R       
Sbjct: 324 TVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPRTIAPDTI 383

Query: 354 -RKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALFRNSRFNREETEI 410
            +K  T V + +  T++L GL+  +  Q+KE   +  LSKIP+LG LF     +   TEI
Sbjct: 384 QKKLSTVVSMENNQTLILGGLISHN--QIKEASEVSFLSKIPLLGLLFSGDETSSNSTEI 441

Query: 411 FIAATPFLVKP----VAMRDL 427
               TP +V      ++++DL
Sbjct: 442 VFIITPSIVDKQMGVLSLKDL 462


>gi|167625758|ref|YP_001676052.1| pilus (MSHA type) biogenesis protein MshL [Shewanella halifaxensis
           HAW-EB4]
 gi|167355780|gb|ABZ78393.1| pilus (MSHA type) biogenesis protein MshL [Shewanella halifaxensis
           HAW-EB4]
          Length = 557

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 21/197 (10%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSS 300
           GG  S+K  L+   F T++  L+    +  L+ P +TA + Q A    G    + T VSS
Sbjct: 339 GGVTSIK--LEGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTNVSS 396

Query: 301 STGA--TSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAG 346
           +T A  T +TT D        G+ L  TP +   G + L I   V +      +I ++  
Sbjct: 397 TTVASNTPITTPDVELTPFFSGIALDVTPQIDEQGNVLLHIHPSVIDIKEQTKIIKISGS 456

Query: 347 --DMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             ++P     +R++DT ++  SG  +V+ GL+K +  ++   +PLL  IP LG  F N  
Sbjct: 457 TLELPLAQSEIRESDTVIKAASGDVVVIGGLMKSENTEIVSKVPLLGDIPFLGEAFTNRA 516

Query: 403 FNREETEIFIAATPFLV 419
            +  +TE+ I   P +V
Sbjct: 517 NSTVKTELVILLKPIVV 533


>gi|121607671|ref|YP_995478.1| general secretion pathway protein D [Verminephrobacter eiseniae
           EF01-2]
 gi|121552311|gb|ABM56460.1| general secretion pathway protein D [Verminephrobacter eiseniae
           EF01-2]
          Length = 720

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 131/294 (44%), Gaps = 32/294 (10%)

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           V   G +R + D     EL+ + L  S R +YA   S   +  L++    QV ++ +I E
Sbjct: 407 VAALGNIRVMAD-----ELNNSVLVWSTRAEYAKIES--TLRRLDLP-PTQVLIEASIIE 458

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVLDR---FSF---- 256
           V  +   + G Q +   S SG       D G G   S  G  +   +      FS+    
Sbjct: 459 VTLNDDLRYGLQWAFNDSRSG------IDRGQGALSSRDGTSTGGILGGALAGFSYALKS 512

Query: 257 -----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-- 309
                  +L+ L   T ++ +A P+L  +   +AS   G Q   +  ++S    +VT+  
Sbjct: 513 PAGAVRAMLNVLSAKTTVKVVASPSLMVLDNHTASIAVGDQTPIQAGTTSNLEGTVTSTN 572

Query: 310 ---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
               D GV L  TP+V +   + ++I   V++        +  ++  R+  + V + SG 
Sbjct: 573 IEYKDTGVNLVVTPSVNAGNIVTMQIDQSVTDVGAKDEVTNQRAFLQRQLSSKVSVRSGE 632

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +IV+ GL+++     K GIP+L  +P+ G LF  +  +   TE+ +  TP +V+
Sbjct: 633 SIVMGGLIQESSSSTKSGIPVLHALPLFGNLFGTTVNDGRRTELLVIITPRVVR 686


>gi|116051101|ref|YP_790068.1| general secretion pathway protein D [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586322|gb|ABJ12337.1| general secretion pathway protein D [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 658

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 29/254 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242
           QV ++  I E+  DI   +G Q +I     G +K+  A+ G             K     
Sbjct: 360 QVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSIGTLLQSLESNKAPESI 419

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D ++ G+    SF  ++ AL   T    L+ P+L  +  Q A    G    ++T S +T
Sbjct: 420 PDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 478

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYR 352
            +       T+V   D GV L  TP +     + L I+ E+S  +      N  D+ + +
Sbjct: 479 NSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISALLPNAQQRNNTDLITSK 538

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP LG LFR+++    +  + +
Sbjct: 539 -RSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFLGRLFRSTKDTHTKRNLMV 597

Query: 413 AATPFLVKPVAMRD 426
                 ++P  +RD
Sbjct: 598 -----FLRPTVVRD 606


>gi|262373971|ref|ZP_06067248.1| general secretion pathway protein D [Acinetobacter junii SH205]
 gi|262310982|gb|EEY92069.1| general secretion pathway protein D [Acinetobacter junii SH205]
          Length = 751

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 107/256 (41%), Gaps = 33/256 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------PSKSFAADFGGKFVSEG 242
           QV ++  I EV  D   Q+G Q ++   SSG             SK  A    G     G
Sbjct: 391 QVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLINFTNVGSSLSKLAAGYLTGGAAGLG 450

Query: 243 -----------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                      GD+       R  +  ++ AL+  T    L+ P++  +  + A    G 
Sbjct: 451 SAIGAGSSIVVGDYKEGANGSRKLYGALIQALKSNTKSNLLSTPSIVTMDNEEAYIVVGQ 510

Query: 292 QHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGV 343
              + T S +T +T V  +      D GV L   P +   G + L ++ EVS  +   G 
Sbjct: 511 NVPFVTGSVTTNSTGVNPYTTVERKDVGVTLKVVPHIGEGGSVRLEVEQEVSAVQESRG- 569

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            A D+ + + R   T+V    G T+VL GL+ D+    ++G+P+L  IP LG LFR    
Sbjct: 570 QATDLVTSK-RAIKTSVLADHGQTVVLGGLISDNSIHSRQGLPVLGDIPYLGRLFRADSK 628

Query: 404 NREETEIFIAATPFLV 419
             E+  + +   P +V
Sbjct: 629 TNEKRNLLVFIHPTIV 644


>gi|238788960|ref|ZP_04632750.1| Protein transporter HofQ [Yersinia frederiksenii ATCC 33641]
 gi|238722987|gb|EEQ14637.1| Protein transporter HofQ [Yersinia frederiksenii ATCC 33641]
          Length = 376

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 6/152 (3%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G    Y       GAT++   +  + +  TP +L  G+I L 
Sbjct: 225 IASPRLVTSHQQTASIKQGSDIPYTVSGGKKGATTIEFKEAVLGMEVTPKILRNGKITLN 284

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P + +  GD  +  + K +  T + +  G TIVL G+ +    Q    +P+L 
Sbjct: 285 LKISQNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETIVLGGIFQQKSSQGVNKVPILG 344

Query: 390 KIPILGALFRN--SRFNREETEIFIAATPFLV 419
            IP LG LF+    + NR E  IFI  TP L+
Sbjct: 345 DIPWLGGLFKQDTQQQNRRELVIFI--TPRLI 374


>gi|302383551|ref|YP_003819374.1| general secretion pathway protein D [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194179|gb|ADL01751.1| general secretion pathway protein D [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 688

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 29/251 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS------SGPS-KSFAADFG----------GK 237
           QV ++V I E+  ++ +QIG Q  + G+        G S  +  +D G          G+
Sbjct: 396 QVKIEVAIVEITGELGEQIGVQLGLGGAVPDDGVIGGTSFSNGGSDLGTVLSALGYPAGR 455

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + +G   +         F  +L AL   +A   L+ P++T +  Q A    G    ++T
Sbjct: 456 LLGQGLSLAAG---SEGEFGLLLQALGTNSAANLLSSPSVTVLDNQPAEIVVGQNVPFRT 512

Query: 298 VSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMP 349
            S +T        T+++  D G+ L   P V     + L +  EVS  V      A D+ 
Sbjct: 513 GSFATDGNSTNPFTTISREDVGLTLRVIPRVHEGDVVKLDVSQEVSSLVTTNITGAADLI 572

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           + R R   T+V    G TIVL GL+ DD       +P LS +P++G  FR+ R ++    
Sbjct: 573 TNR-RSIQTSVLANDGETIVLGGLVTDDRMSNNSRVPGLSSLPVVGNAFRSRRDSQTRRT 631

Query: 410 IFIAATPFLVK 420
           +FI   P +++
Sbjct: 632 LFIFLKPTILR 642


>gi|288942699|ref|YP_003444939.1| general secretion pathway protein D [Allochromatium vinosum DSM
           180]
 gi|288898071|gb|ADC63907.1| general secretion pathway protein D [Allochromatium vinosum DSM
           180]
          Length = 733

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 33/248 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++ TI E+      + G Q  + G  +   KSFA+   G F     D    G+   F
Sbjct: 472 QVLVEATIVEITLSGSLKYGVQWELFGPGAD-GKSFAS-LDGTF----DDAETSGIGTMF 525

Query: 255 ------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                       + +  L AL     +  L+ P++  +  Q+A    G + +    S   
Sbjct: 526 PGFNWAMVSNPDTIKATLSALAGDNLLNVLSSPSVMVMDNQTAKIQVG-REVPIATSKQD 584

Query: 303 GATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSY 351
           G ++       ++  D GV+L   P V   G + L I+ EVS    E   G+N+   PS+
Sbjct: 585 GTSTTDRTYTTISYKDTGVILTVKPRVTPGGLVQLEIEQEVSTVFEENASGLNS---PSF 641

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   ++V + S   +VL GL++D     K+GIP L  +P++G LF  +  +   TE+ 
Sbjct: 642 KKRTITSSVAVRSNQAVVLGGLIEDTRSDGKQGIPGLYSLPVVGGLFGETSKSSTRTELV 701

Query: 412 IAATPFLV 419
           +  TP ++
Sbjct: 702 VVLTPKVI 709


>gi|206561863|ref|YP_002232628.1| type II secretion system protein D [Burkholderia cenocepacia J2315]
 gi|198037905|emb|CAR53850.1| type II secretion system protein D [Burkholderia cenocepacia J2315]
          Length = 777

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 16/191 (8%)

Query: 245 FSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           F V+G+   L  FS  +  + L     I TL       + GQ+    +G    Y  ++S 
Sbjct: 492 FGVQGLGALLQYFSGVSDANVLSTPNLI-TLDNEEAKIVVGQNVPIATGS---YSNLTSG 547

Query: 302 TGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKAD 357
           T + +  T+D    G+ LH  P +   G + L++ TE S  V G  +    P++  R   
Sbjct: 548 TTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTSAQTGPTFTKRSIQ 607

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           +T+   +G  IVL GL++D+       +PLL  IP +G LFR+    R++T + +     
Sbjct: 608 STILADNGEIIVLGGLMQDNYAVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMV----- 662

Query: 418 LVKPVAMRDLS 428
            ++PV + D S
Sbjct: 663 FLRPVIISDRS 673


>gi|153870600|ref|ZP_01999967.1| MSHA biogenesis protein MshL [Beggiatoa sp. PS]
 gi|152072935|gb|EDN70034.1| MSHA biogenesis protein MshL [Beggiatoa sp. PS]
          Length = 494

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 26/245 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGF-QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           + QV ++ TIAEV+ +   Q G     I G  +        + G       G  +V   L
Sbjct: 249 QRQVLIEATIAEVQLNDQYQAGIDWQRIDGDFNYTQALTGGNLGNAPFYSFGYSNVASRL 308

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------- 304
              S    +  LE+  +++ L+ P + A++ Q+A        +Y T              
Sbjct: 309 GNIS--ATVRLLEQFGSVKVLSSPKIMALNNQTAILKVVDNIIYFTTEVEITETDTRTRE 366

Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGV--NAGDMPS 350
              T + T   G+V+  TP +     + L I+  +S          P +        +P 
Sbjct: 367 TFETEINTVPVGLVMSVTPQISENNVVMLNIRPTISRIINFKVDPNPALAAAGTVNQIPE 426

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREET 408
            +VR+ +T +++  G   V+ GL++D   Q+K+G+P+LS++P++G  F  R+ ++ + E 
Sbjct: 427 IQVREIETILKINHGDIGVIGGLMQDTTNQIKKGVPVLSQLPLVGDFFSYRDDQYEKTEL 486

Query: 409 EIFIA 413
            IF A
Sbjct: 487 VIFYA 491


>gi|313501056|gb|ADR62422.1| PilQ [Pseudomonas putida BIRD-1]
          Length = 384

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 7/225 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           QV ++  I E   D  K +G +    + G    P K    D G      G    +  +  
Sbjct: 152 QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLG--LERAGSSIGLGLLRG 209

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
               +  L A+E++     +++P +     ++A    G +  Y+  S S GATSV+  + 
Sbjct: 210 DVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQS-GATSVSFREA 268

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371
            + L  TP +    ++ + ++    EP   VNA  ++P  R  + +  V +  G TIV+ 
Sbjct: 269 SLSLEVTPQITPDNKVIMTVRVTKDEPDY-VNALNNVPPIRKNEVNAKVRVADGETIVIG 327

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           G+       + + +P    +P +G LFR      +++E+ +  TP
Sbjct: 328 GVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 372


>gi|1019923|gb|AAA79322.1| S-protein secretion D [Aeromonas hydrophila]
          Length = 737

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 9/157 (5%)

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSP 325
           + P L   SG+ A    G +    T +S +          +V     GV+L   PTV + 
Sbjct: 537 SSPKLMVRSGEEARIEVGNEIPVVTGTSQSTDNPDAPINKTVQYRKTGVILTIKPTVQAS 596

Query: 326 GRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           G + L I  E+SE      + D   P+   RK +T + L  GG+++LAGL+     +   
Sbjct: 597 GVVDLTISQELSEQADTSTSTDALSPTIMNRKVNTALTLRDGGSVMLAGLISSTKGEGDT 656

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G+PLL  IP +G+LF++   ++  TE+ +   P++++
Sbjct: 657 GVPLLGDIPWIGSLFKSKSNSQNRTELVVMIIPYVLR 693


>gi|170728738|ref|YP_001762764.1| pilus (MSHA type) biogenesis protein MshL [Shewanella woodyi ATCC
           51908]
 gi|169814085|gb|ACA88669.1| pilus (MSHA type) biogenesis protein MshL [Shewanella woodyi ATCC
           51908]
          Length = 562

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 28/275 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250
           QV L+  I EV      Q G +  ++ G       SF     G  +S+    ++ GV   
Sbjct: 285 QVILEAKILEVTLSDGYQQGIEWQNVLGHVGDTDISFGTSPSGSGLSDSITSAIGGVTSM 344

Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATS 306
            +    F T+++ L+    +  L+ P +TA + Q A    G    + T  SST   G T 
Sbjct: 345 KISGADFTTMINLLDTQGDVDVLSSPRVTATNNQKAVIKVGKDEYFVTDVSSTTVAGTTP 404

Query: 307 VTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDM----PS 350
           VT+ +        G+ L  TP +   G I L I   V         I ++  ++      
Sbjct: 405 VTSPEVELTPFFSGIALDVTPQIDGEGNILLHIHPSVINIKEQTKTIKISGSELELPLAQ 464

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++DT ++  +G  +V+ GL+K +   L   +PLL  IP++G LF N   + ++TE+
Sbjct: 465 SDIRESDTVIKAKTGEVVVIGGLMKSENIDLVSKVPLLGDIPLVGELFTNRSKSLQKTEL 524

Query: 411 FIAATPFLVKPVAMR-DLSRPD---DHYSVEDDAK 441
            +   P +V+    + +L R     D +  ED+ +
Sbjct: 525 VLLLKPTVVEADTWKQELKRSKELLDRWYPEDEQE 559


>gi|313108415|ref|ZP_07794431.1| general secretion pathway protein D [Pseudomonas aeruginosa 39016]
 gi|310880933|gb|EFQ39527.1| general secretion pathway protein D [Pseudomonas aeruginosa 39016]
          Length = 658

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 29/254 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242
           QV ++  I E+  DI   +G Q +I     G +K+  A+ G             K     
Sbjct: 360 QVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSIGTLLQSLESNKAPESI 419

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D ++ G+    SF  ++ AL   T    L+ P+L  +  Q A    G    ++T S +T
Sbjct: 420 PDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 478

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYR 352
            +       T+V   D GV L  TP +     + L I+ E+S  +      N  D+ + +
Sbjct: 479 NSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISALLPNAQQRNNTDLITSK 538

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP LG LFR+++    +  + +
Sbjct: 539 -RSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFLGRLFRSTKDTHTKRNLMV 597

Query: 413 AATPFLVKPVAMRD 426
                 ++P  +RD
Sbjct: 598 -----FLRPTVVRD 606


>gi|119773594|ref|YP_926334.1| MSHA biogenesis protein MshL [Shewanella amazonensis SB2B]
 gi|119766094|gb|ABL98664.1| MSHA biogenesis protein MshL [Shewanella amazonensis SB2B]
          Length = 561

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 28/252 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSS--SGPSK-SFAA----DFGGKFVSEGGDFS 246
           QV L+  + EV      Q G Q + I GS+   G +K +FA     +FG +  S  G  +
Sbjct: 287 QVILEAKVLEVTLSDGYQQGIQWNKIAGSALADGNTKINFATSAGNEFGNQISSALGGVT 346

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---G 303
              ++    F+ +++ L+    +  L+ P +TA + Q A    G    + T  SST   G
Sbjct: 347 SLSIIGS-DFDAMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGKDEYFVTDVSSTTVAG 405

Query: 304 ATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDM--- 348
            T VT+ +        G+ L  TP +   G + L +   V +       I ++  D+   
Sbjct: 406 TTPVTSPEVELTPFFSGIALDVTPQIDGQGNVLLHVHPSVIDVKEQTKTIKISNSDLELP 465

Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
                +R++DT ++  SG  +V+ GL+K +  +L   +PLL  IP LG  F N   +  +
Sbjct: 466 LAQSEIRESDTVIKAMSGDVVVIGGLMKSESLELVSKVPLLGDIPFLGEAFTNRSQSVRK 525

Query: 408 TEIFIAATPFLV 419
           TE+ I   P +V
Sbjct: 526 TELVILLKPTVV 537


>gi|325922191|ref|ZP_08183978.1| type II secretory pathway protein D [Xanthomonas gardneri ATCC
           19865]
 gi|325547310|gb|EGD18377.1| type II secretory pathway protein D [Xanthomonas gardneri ATCC
           19865]
          Length = 674

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 8/175 (4%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT------ 309
           F  ++ A++  T    L+ P++  +  + A    G Q +  T     G  +V        
Sbjct: 431 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGTANVNPFRTIQR 489

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTI 368
            D GV L   P + + G I L I+ EVS     V+A      +  R+ +T V + +G  +
Sbjct: 490 QDVGVQLEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIV 549

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            L GLL  + +Q  E +PLL  +P LGALFR+   NR++T + +   P +++  A
Sbjct: 550 ALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 604


>gi|188990167|ref|YP_001902177.1| exported type II protein secretion system protein D [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167731927|emb|CAP50113.1| exported type II protein secretion system protein D [Xanthomonas
           campestris pv. campestris]
          Length = 690

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  ++ A++  T    L+ P++  +  + A    G Q +  T     GA       ++  
Sbjct: 453 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNPFRTIQR 511

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGG 366
            D GV L   P + + G I L I+ EVS    PV    + ++  +  R+ +T V + +G 
Sbjct: 512 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPV-STQSSEL-VFNKRQIETRVVVENGA 569

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            + L GLL  + +Q  E +PLL  +P LGALFR+   NR++T + +   P +++  A
Sbjct: 570 IVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 626


>gi|117620233|ref|YP_854918.1| msha biogenesis protein mshl [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561640|gb|ABK38588.1| msha biogenesis protein mshl [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 557

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 24/224 (10%)

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           ITG  S    + A      F + GG    K  +   +F   ++ L+    + TL+ P +T
Sbjct: 313 ITGGGSLTPSTIANTPNQIFSALGGGAGFK--ISDGNFNVAVNLLKTQGDVNTLSSPRVT 370

Query: 279 AISGQSASFTSGGQHLYKTVSSS------------TGATSVTTHDYGVVLHFTPTVLSPG 326
           A + Q A    G    + T +S+            T    +T    G+ L  TP +   G
Sbjct: 371 ATNNQKAVIKVGTDEYFVTNASTTTTTSGTSAPIVTPNVELTPFFSGIALDVTPQIDEEG 430

Query: 327 RIGLRIQ-----TEVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           ++ L I      TE  +  I V   D     +    +R++DT V+  +G  IV+ GL+K 
Sbjct: 431 KVLLHIHPSVIDTEEQKKTIDVGTADPLILPLAKSSIRESDTVVQANNGDIIVIGGLMKT 490

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           D Q++   +PLL  IP +G  F N R + ++ E+ I   P +V+
Sbjct: 491 DKQEIVSKVPLLGDIPWVGEAFTNRRESTKKVELVILLKPTVVE 534


>gi|21232854|ref|NP_638771.1| type II secretion system protein D [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767075|ref|YP_241837.1| type II secretion system protein D [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114682|gb|AAM42695.1| type II secretion system protein D [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572407|gb|AAY47817.1| type II secretion system protein D [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 690

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  ++ A++  T    L+ P++  +  + A    G Q +  T     GA       ++  
Sbjct: 453 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNPFRTIQR 511

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGG 366
            D GV L   P + + G I L I+ EVS    PV    + ++  +  R+ +T V + +G 
Sbjct: 512 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPV-STQSSEL-VFNKRQIETRVVVENGA 569

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            + L GLL  + +Q  E +PLL  +P LGALFR+   NR++T + +   P +++  A
Sbjct: 570 IVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 626


>gi|153003562|ref|YP_001377887.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. Fw109-5]
 gi|152027135|gb|ABS24903.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. Fw109-5]
          Length = 893

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 7/173 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
           F+    L ALE    ++T++ P +  I  + A+   G    +  VS+S    + T  +  
Sbjct: 718 FNLNLRLSALENNGVVKTISAPKIATIDNREATIGQGISIPFSQVSAS--GVNTTFIEAK 775

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + L  TP V + G I L+I+   ++P   + G N    PS   R+A+T V +  G T V+
Sbjct: 776 LELKVTPHVSADGSILLKIKATNNQPNPQLTGANG--QPSISKREAETEVLVKDGETTVI 833

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G+           +P L K+P+LG  FRN     + TE+ I  TP ++   A
Sbjct: 834 GGIYTRQTANRTSEVPFLGKLPLLGYFFRNMSEQDDHTELLIFITPRILNRAA 886


>gi|221202224|ref|ZP_03575259.1| general secretion pathway protein D [Burkholderia multivorans
           CGD2M]
 gi|221208715|ref|ZP_03581714.1| general secretion pathway protein D [Burkholderia multivorans CGD2]
 gi|221214336|ref|ZP_03587308.1| general secretion pathway protein D [Burkholderia multivorans CGD1]
 gi|221165991|gb|EED98465.1| general secretion pathway protein D [Burkholderia multivorans CGD1]
 gi|221171347|gb|EEE03795.1| general secretion pathway protein D [Burkholderia multivorans CGD2]
 gi|221178018|gb|EEE10430.1| general secretion pathway protein D [Burkholderia multivorans
           CGD2M]
          Length = 768

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 19/163 (11%)

Query: 295 YKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPS 350
           Y  ++S T + +  T+D    G+ LH  P +   G + L++ TE S       NA   PS
Sbjct: 537 YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNAQTGPS 596

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R   +T+   +G  IVL GL++D        +PLL  IP +G LFR+    R++T +
Sbjct: 597 FTKRSIQSTILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNL 656

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
            +      ++PV + D           D A+A   NR + I G
Sbjct: 657 MV-----FLRPVIIAD----------RDTAQAVTSNRYDYIQG 684


>gi|254282305|ref|ZP_04957273.1| general (Type II) secretion pathway (GSP) D protein [gamma
           proteobacterium NOR51-B]
 gi|219678508|gb|EED34857.1| general (Type II) secretion pathway (GSP) D protein [gamma
           proteobacterium NOR51-B]
          Length = 346

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 16/249 (6%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR- 253
           QV ++ +I EV        G + +  G   G   +          + G   S  G L R 
Sbjct: 81  QVMIEASIIEVTLTDELSYGLEWTFNGQLGGSEYNGVGTLSDGNFNLGSPDSPLGQLARG 140

Query: 254 FSFE---------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---TVSSS 301
           FS+           VL AL   + I  ++ P++  +   +A    G Q   +   TVS+ 
Sbjct: 141 FSYSVTGGSGDIVAVLQALSTQSLINVISSPSVMVLDNNTAYIHVGDQVPIRSGSTVSNG 200

Query: 302 TGAT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              T ++T  D GV L   P+V + G + L ++  V++ V  ++      +  R+  + V
Sbjct: 201 GNVTENITYRDTGVKLSVRPSVNAGGLVTLDVEQSVTD-VGPIDVTGNRRFLEREIMSRV 259

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP-FLV 419
            + SG ++VL GL++++    +EG+P L K+P++GALF  +  +   TE+ +  TP  L 
Sbjct: 260 AVRSGESVVLGGLIRENATNSEEGVPWLHKVPLIGALFGTTDKSDTRTELVVMITPRALY 319

Query: 420 KPVAMRDLS 428
               +R++S
Sbjct: 320 NDAQLREVS 328


>gi|148550155|ref|YP_001270257.1| type IV pilus secretin PilQ [Pseudomonas putida F1]
 gi|148514213|gb|ABQ81073.1| type IV pilus secretin PilQ [Pseudomonas putida F1]
          Length = 420

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 7/225 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           QV ++  I E   D  K +G +    + G    P K    D G      G    +  +  
Sbjct: 188 QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLG--LERAGSSIGLGLLRG 245

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
               +  L A+E++     +++P +     ++A    G +  Y+  S S GATSV+  + 
Sbjct: 246 DVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQS-GATSVSFREA 304

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371
            + L  TP +    ++ + ++    EP   VNA  ++P  R  + +  V +  G TIV+ 
Sbjct: 305 SLSLEVTPQITPDNKVIMTVRVTKDEPDY-VNALNNVPPIRKNEVNAKVRVADGETIVIG 363

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           G+       + + +P    +P +G LFR      +++E+ +  TP
Sbjct: 364 GVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 408


>gi|294341497|emb|CAZ89914.1| putative general secretion pathway protein [Thiomonas sp. 3As]
          Length = 884

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 113/260 (43%), Gaps = 27/260 (10%)

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV-KGVLDRFSFETVLHALERATAIRT 271
           I  Q +I+G  S  + + A+  G   +  G +  +   V    +   + + L+       
Sbjct: 486 INLQAAISGGGSSAATALAS--GSLAIPNGLNIGILHNVAGMATLGLLANFLQTQDGANI 543

Query: 272 LAEPTLTAIS--------GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           L+ P L  +         GQ+  F +G      + ++ T   ++   D G+ L   P + 
Sbjct: 544 LSAPNLMTLDNEEAKIVVGQNVPFVTGQYAQTGSSATVTPFQTIERKDVGLTLKVRPQIT 603

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           + G I + +  EVS      NA  + + + R   T V +  G TIVL GL++D++ Q   
Sbjct: 604 AGGAIKMDVYQEVSSISSTTNAAGIITNK-RSIQTAVLVNDGQTIVLGGLMQDNVSQNNS 662

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            IP L  IP LGALFR++    ++T++ +      ++P+ +R           ED   A 
Sbjct: 663 KIPGLGDIPGLGALFRSNSRTAQKTDLMV-----FLRPIVVR----------TEDQGNAL 707

Query: 444 FFNRVNKIYGPKEASEVEGQ 463
              R + + G ++ +++  Q
Sbjct: 708 SQQRYDTMRGMQDRAQLPAQ 727


>gi|313682348|ref|YP_004060086.1| type ii and iii secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155208|gb|ADR33886.1| type II and III secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
          Length = 535

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 124/285 (43%), Gaps = 30/285 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKFVSEGGDFSVKGVL 251
           QV ++  I E+     K++G ++ ++G + G +  F  +     G   +   D SV   L
Sbjct: 258 QVYVRAKIIEISEGKSKEVGIKYGLSGGTVGSNGVFTFNTMLGDGTAAAVALDPSVTTAL 317

Query: 252 DRFSFETV---------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            +F   T+         +  L    A   L+EP++  I    +S   G     KT S S+
Sbjct: 318 -KFDIPTITSGIALGANIALLNTNGAAEILSEPSILCIDNLESSIYVG-----KTESISS 371

Query: 303 GAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
           G T         + T  D G+ L   P + +  ++ L +  ++ +     N   +PS   
Sbjct: 372 GVTQGVGTGITQNFTRQDIGLTLKIKPRLSNDNKVLLGVNAKLEDIDSNTNL-QLPSTTK 430

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+  T+  + +G T+++ GL+++        +P L  IP+LG LFR+     ++  + I 
Sbjct: 431 REVITSAIVNNGETVIIGGLIREKTDHNDNRVPFLGDIPVLGHLFRDESSKTDKINLVIL 490

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
            TP++++     DLS      +  D  +A + +R+ +    K+ S
Sbjct: 491 LTPYIIEKSG--DLSSLRAQLNQLDAIQARYVDRITQSLESKKKS 533


>gi|26991756|ref|NP_747181.1| type IV pilus secretin PilQ [Pseudomonas putida KT2440]
 gi|24986864|gb|AAN70645.1|AE016708_6 type IV pili biogenesis protein PilQ [Pseudomonas putida KT2440]
          Length = 420

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 7/225 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           QV ++  I E   D  K +G +    + G    P K    D G      G    +  +  
Sbjct: 188 QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLG--LERAGSSIGLGLLRG 245

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
               +  L A+E++     +++P +     ++A    G +  Y+  S S GATSV+  + 
Sbjct: 246 DVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQS-GATSVSFREA 304

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371
            + L  TP +    ++ + ++    EP   VNA  ++P  R  + +  V +  G TIV+ 
Sbjct: 305 SLSLEVTPQITPDNKVIMTVRVTKDEPDY-VNALNNVPPIRKNEVNAKVRVADGETIVIG 363

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           G+       + + +P    +P +G LFR      +++E+ +  TP
Sbjct: 364 GVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 408


>gi|37524117|ref|NP_927461.1| hypothetical protein plu0091 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783540|emb|CAE12386.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 344

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 14/181 (7%)

Query: 251 LDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           + RF+F          E  L ALE+   +  +A P LTA   Q AS   G    Y  VS 
Sbjct: 164 MHRFAFNIARIHTSLLEMELSALEQENQLDIIASPRLTASHQQLASIKQGSDIPY--VSQ 221

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--T 358
               ++V   +  + +  TP +L   +I L ++   + P I ++ G   +  + K +  T
Sbjct: 222 EKEKSTVQFKEAVLGMEVTPHILRKNKIRLSLKISQNMPGISISQGGGENLTIDKQEIIT 281

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V + +G T++L G+ +    +  + +P LS IP+LG+LF          E+ I  TP L
Sbjct: 282 QVTVKNGETLILGGIFQQKKGEQTQKVPYLSDIPLLGSLFNQKAHKHSRRELVIFITPQL 341

Query: 419 V 419
           +
Sbjct: 342 M 342


>gi|330446773|ref|ZP_08310424.1| pilus (MSHA type) biogenesis protein MshL [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490964|dbj|GAA04921.1| pilus (MSHA type) biogenesis protein MshL [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 539

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 117/265 (44%), Gaps = 46/265 (17%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADF----GGKFVSE--GGDFSV 247
           QV L+  I EV  D   Q G   S +T S +G +   AA      GG  +S+  GG  ++
Sbjct: 266 QVVLEAKIMEVTLDDSYQQGINWSYLTKSGNGITMGTAAIVDGLPGGNAISDLLGGQTNI 325

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSS--TGA 304
              +   +F  V+  L     +  L+ P +TA + Q A    GG   + T VSSS  +G 
Sbjct: 326 --TISDGNFNAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGD 383

Query: 305 TSVTTHDY---------------------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            +  + D                      GV+LH  P V+       +I+   ++P++  
Sbjct: 384 NNTVSPDVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVQNEEKKIEVGTAKPMV-- 441

Query: 344 NAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
               +P  +  +R++D+ +   +G  +V+ GL+K  I      +PLL  IP +G LFR  
Sbjct: 442 ----LPLAKSTIRESDSIIHARTGDVVVIGGLMKSTINDQVSKVPLLGDIPGVGNLFRQI 497

Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426
              +++TE+ I     L+KP  + D
Sbjct: 498 NKVKKKTELVI-----LLKPTVVTD 517


>gi|262370143|ref|ZP_06063470.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262315182|gb|EEY96222.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 785

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 111/258 (43%), Gaps = 36/258 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------KSFAADFGGKFVSEG- 242
           QV ++ TI EV  +   Q+G Q ++   SSG             KS AA++     +   
Sbjct: 384 QVLIEATILEVEGNDADQLGVQWAMGDLSSGVGIINFDNIGSSLKSIAANYLTGGGAGAA 443

Query: 243 -----------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                      GD+       R  +  ++ AL+  T    L+ P++  +  + A    G 
Sbjct: 444 SAIGAGGSLILGDYKEGSDGSRQLYGAMIQALKSNTKSNLLSTPSIVTMDNEEAYIVVGE 503

Query: 292 QHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
              + T S ST +       T++   D GV L   P +   G I L I+ EVS+  +  N
Sbjct: 504 NVPFVTGSVSTTSSGTANPYTTIERKDVGVTLKVVPHIGEGGTIRLEIEQEVSD--VKAN 561

Query: 345 AG---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            G   D+ + + R   T+V    G TIVL GL+ D+    ++ IP L  IP LG LFR+ 
Sbjct: 562 KGQAQDLVTSK-RAIKTSVLAEHGNTIVLGGLISDNTSYSRQSIPGLGAIPGLGRLFRSD 620

Query: 402 RFNREETEIFIAATPFLV 419
             + ++  + +   P +V
Sbjct: 621 GKSDQKRNLLVFIHPTIV 638


>gi|256823455|ref|YP_003147418.1| type IV pilus secretin PilQ [Kangiella koreensis DSM 16069]
 gi|256796994|gb|ACV27650.1| type IV pilus secretin PilQ [Kangiella koreensis DSM 16069]
          Length = 701

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 113/256 (44%), Gaps = 42/256 (16%)

Query: 202 IAEVRR-----DI-LKQIGFQHSITGSSSGPSKSFAADFGGKF-VSE-------GGDFSV 247
           I +VRR     DI ++Q+  +  I  +  G    FA D G +F VS+        GDF+V
Sbjct: 446 IEDVRRLVAQLDIPVRQVLIEARIVTADDG----FARDLGSRFGVSDVMNSGEVNGDFNV 501

Query: 248 K-------GVL--------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                   G L        D    +  L ALE       +A P +   + Q  +F   G+
Sbjct: 502 NLPIANPAGSLGLSFARLQDGIVVDMELSALESENRGEVVASPKVIT-ANQKEAFIKAGE 560

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVI-----GVN 344
            +     +S+GA +V   +  + L  TP +   GR+ L +   Q    E VI     G  
Sbjct: 561 EIPYLQGASSGAANVQFKEAVLELKVTPQITPDGRVILDLAITQDTRGENVIFTSPDGGG 620

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           +   P+   ++  T V + +G TIVL G+ +      +  +PLL  IP+LG LF+N++  
Sbjct: 621 SSGAPAINTQEIGTQVLVDNGETIVLGGIFQHRTTYDESKVPLLGDIPLLGWLFKNTQRE 680

Query: 405 REETEIFIAATPFLVK 420
             + E+ I  TP +++
Sbjct: 681 DTKQELLIFVTPKIIE 696


>gi|271502312|ref|YP_003335338.1| type IV pilus secretin PilQ [Dickeya dadantii Ech586]
 gi|270345867|gb|ACZ78632.1| type IV pilus secretin PilQ [Dickeya dadantii Ech586]
          Length = 433

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 3/164 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +  + +  T
Sbjct: 262 LMALEQENEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 321

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +L  G+I L +    + P   +     G++ +   ++  T V +  G TIVL G+ + 
Sbjct: 322 PRILHGGQITLNLLISQNMPGRAIKQGEGGEILAIDKQEIQTQVTVQDGETIVLGGIFQQ 381

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              Q +  +P L  +P +G LFR +       E+ I  TP L++
Sbjct: 382 QKNQGERQVPGLGALPGIGRLFRATSQQHTRRELVIFITPTLIQ 425


>gi|17547022|ref|NP_520424.1| GSPD-like protein [Ralstonia solanacearum GMI1000]
 gi|17429323|emb|CAD16010.1| probable type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum GMI1000]
          Length = 789

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           E +V L+V + EV RD L  +G     + S   PS   A+ +G          +  G   
Sbjct: 338 EPEVMLEVEVLEVSRDRLTDLGIDWPNSFSLGTPSS--ASTWGALHHLTVNQLTASG--- 392

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATS 306
             S    L   +  T    LA P +   + + A    G +    + SS         + S
Sbjct: 393 -LSVTANLKLTD--TDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSGPVYSQS 449

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------YRV--RKADT 358
           +   D G+ L   P V     +G+++  EVS     +++ +  +      Y++  R A T
Sbjct: 450 IQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNAQTGLSSLAYQIGTRNAST 509

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           T+ L  G T +L GL++D+ +     +P L ++P+LG LF N   + ++TEI +  TP +
Sbjct: 510 TLRLKDGETQILGGLIQDEDRDAANKVPGLGQLPVLGRLFSNHNGDHKKTEIVLQITPHI 569

Query: 419 VKP 421
           V+P
Sbjct: 570 VRP 572


>gi|262402018|ref|ZP_06078583.1| type II secretory pathway component PulD [Vibrio sp. RC586]
 gi|262351990|gb|EEZ01121.1| type II secretory pathway component PulD [Vibrio sp. RC586]
          Length = 675

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 21/181 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  +++A+   +    L+ P++T +    ASF  G     + V   TG+T+ + +D    
Sbjct: 444 WTALINAVSNDSKSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 498

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G
Sbjct: 499 TVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDG 557

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + +      +KP  +R
Sbjct: 558 QMLVLGGLIDERAIESESKVPLLGDIPVLGQLFRSTSSQVEKKNLMV-----FIKPTIIR 612

Query: 426 D 426
           D
Sbjct: 613 D 613


>gi|262370669|ref|ZP_06063994.1| type IV pilus biogenesis and competence protein pilQ [Acinetobacter
           johnsonii SH046]
 gi|262314469|gb|EEY95511.1| type IV pilus biogenesis and competence protein pilQ [Acinetobacter
           johnsonii SH046]
          Length = 390

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 114/254 (44%), Gaps = 16/254 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--- 238
           +++++LL++A + QV ++  I     D  +++G + S      G S  +  DF   F   
Sbjct: 143 RRMIDLLDVAVK-QVMVEARIVTASTDFSRELGIKWS--AKKLGNSPVWGGDFQPSFDLG 199

Query: 239 ----VSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                +  G F+  G+L    +     L AL+       L+ P +     Q A    G +
Sbjct: 200 VDLATNTAGTFNF-GLLKISDYMLNLELSALQADGHGEVLSAPKVLTGDKQKAYILRGTE 258

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
             Y+T S++ G  +       + L  TP++   G++ + ++ E        +AG +    
Sbjct: 259 IPYQTWSATEGLKT-EFRAANLKLEVTPSITPDGKVQMALKIEKDTVGTLTSAGYL--IN 315

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
             + +T V +  G T+VL G+  D  Q   E +P    +P++GALF+N+  +  +TE+ I
Sbjct: 316 TNELETNVLVDDGETVVLGGIFDDIKQNQYEKVPFFGDLPVVGALFKNNTRSSAQTELLI 375

Query: 413 AATPFLVKPVAMRD 426
             TP +V     R+
Sbjct: 376 FVTPRIVNDSVSRN 389


>gi|296123515|ref|YP_003631293.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
 gi|296015855|gb|ADG69094.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
          Length = 915

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 15/203 (7%)

Query: 220 TGSSSGPSKSFAADFGG-KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           TGS   P   F A+  G K+    GD +             + ALE       +A P + 
Sbjct: 566 TGSIIPPGAQFLANTAGLKYGFIAGDIT-----------GFIRALESIADTSLVASPQIR 614

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           A++ Q A    G +  YKT++ ++  T  +V   + G  L   P +   G + + +  E 
Sbjct: 615 ALNKQRAEMIIGNRLSYKTLAFNSTQTIENVNFLESGTKLIIRPFIAPDGLVRMEVHPER 674

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           S  VI  + G +P     +  T V +  G T+V+ GL+ ++  +  + +P+L  IP++GA
Sbjct: 675 SRAVINQSTG-LPDQDTTEVTTNVMVRDGQTVVIGGLISEESTESIDRVPVLGAIPLVGA 733

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
            FRN     E TE+ +  TP +V
Sbjct: 734 AFRNKSSRIERTELIVLITPRIV 756


>gi|71279149|ref|YP_267229.1| type IV pilus biogenesis protein PilQ [Colwellia psychrerythraea
           34H]
 gi|71144889|gb|AAZ25362.1| type IV pilus biogenesis protein PilQ [Colwellia psychrerythraea
           34H]
          Length = 706

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 2/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+      +A P +T  + + A    G +  Y+  +SS GAT+       + L  T
Sbjct: 545 LSALEKENKGEVIASPRITTANQKEAYIEQGVEIPYQEAASS-GATATQFKKAVLSLTVT 603

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +    +I L +     + +  + +G  P+   ++  T V + +G TIVL G+ +  I 
Sbjct: 604 PHITPDDKIILDLVV-TQDTISDITSGFAPAIDTQRIGTQVLVNNGETIVLGGIYQQAII 662

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                IP+L  IP LG LFRNS    E+ E+ I  TP +V
Sbjct: 663 STVSKIPILGDIPYLGWLFRNSSQLNEKKELLIFVTPRIV 702


>gi|297565761|ref|YP_003684733.1| type II and III secretion system protein [Meiothermus silvanus DSM
           9946]
 gi|296850210|gb|ADH63225.1| type II and III secretion system protein [Meiothermus silvanus DSM
           9946]
          Length = 771

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 37/251 (14%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---EGG---DFS 246
           + QV L+V I  V   +++++G +                  GG  V+   E G    F 
Sbjct: 527 KQQVQLQVRIQAVNSSVIRELGLKWETIS-------------GGNLVASILEKGLSLIFD 573

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG-------------QSASFTSGGQH 293
               L   +    L+ALE     R +++  L   SG               A   +GG+ 
Sbjct: 574 ATRSLASLNIRATLNALESQNLSRRISDANLLVESGYGNDTSDLRQANAAGAELKAGGKL 633

Query: 294 LYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
           L  T ++ST    G  SV   D G+ L   P +   G+I L + T+  E    V A D  
Sbjct: 634 LIVTTTASTSQGGGQQSVREFDVGLTLRLRPRITPDGQIILEVYTQTGEQP-QVLAPDRT 692

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              V    ++  +  G T+V+ GL++      +  +PLL  IPI+GALF+ +    ++ E
Sbjct: 693 FLPVNSTLSSFRIKDGQTVVMGGLVQTTTTNTENKVPLLGDIPIIGALFKQTTAENKQEE 752

Query: 410 IFIAATPFLVK 420
           + +  T  +VK
Sbjct: 753 LIVIITANIVK 763


>gi|33866866|ref|NP_898425.1| general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 8102]
 gi|33639467|emb|CAE08851.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 8102]
          Length = 344

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 95/174 (54%), Gaps = 10/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----- 309
           SF + + A+ ++++ +TLA+PTL    G++A   +G Q +   VS++  A   T      
Sbjct: 145 SFYSYVEAMIQSSSAKTLAQPTLLVQEGETAMVETG-QSVITGVSATETANGSTQFQNTR 203

Query: 310 HDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPV-IGVNAG-DMPSYRVRKADT-TVELPSG 365
            + G+ +  + + +   G I L ++ E+S P+  G   G  + + + RK ++ ++ L  G
Sbjct: 204 ENAGLTVDLSVSKIDDNGFISLELKPEISVPIPAGTQEGVGIFNIQARKLESGSIRLRDG 263

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +++L G++ D  +Q     P+L  +P++G LFR S  +RE+ E+ I  TP ++
Sbjct: 264 QSLILTGVITDSDRQQVRKWPILGDMPLIGQLFRQSSSSREKNELVIIVTPTIL 317


>gi|83648789|ref|YP_437224.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC
           2396]
 gi|83636832|gb|ABC32799.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC
           2396]
          Length = 561

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 112/264 (42%), Gaps = 37/264 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSFAADFGGKFVSEGG 243
           QV L+V I EV   +L + GF+  +  S           S  P+KS       + V+  G
Sbjct: 281 QVILEVKILEV---VLNK-GFEQGVNWSYFDEFTSKVDASGDPTKSLTLGQTSRSVTNPG 336

Query: 244 DFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
              V     R + F T+L  L     ++ L+ P ++ I+ Q A    G    + T   + 
Sbjct: 337 LEGVFSAALRINDFTTLLQLLGEQGTVQVLSSPRISTINNQKAVIKVGDDEFFVTGIETN 396

Query: 303 GATS------------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNA 345
            AT+            +T    G+ L  TP +   G + L +   VS+       I + A
Sbjct: 397 DATTTSGTSNLISEVEITPFFSGIALDVTPQIGENGDVTLHVHPTVSDVEDQTKTISLGA 456

Query: 346 GDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            D+        VR+ D+ ++  +G  +V+ GL+++  ++ +  +PLL  IP+LG  FR  
Sbjct: 457 NDLVLPLAFSSVRETDSVIKARNGQVVVIGGLIRNLTEKTQAKVPLLGDIPLLGHAFRQK 516

Query: 402 RFNREETEIFIAATPFLVKPVAMR 425
           R    ++E+ I   P +    + R
Sbjct: 517 RDTELKSELVILIRPIIADSESYR 540


>gi|260551051|ref|ZP_05825255.1| type II secretory pathway [Acinetobacter sp. RUH2624]
 gi|260405818|gb|EEW99306.1| type II secretory pathway [Acinetobacter sp. RUH2624]
          Length = 758

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 35/258 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------KSFAADF--GG----- 236
           QV ++  I EV  D   Q+G Q ++   SSG              S AA +  GG     
Sbjct: 394 QVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGTAGAA 453

Query: 237 KFVSEGGDFSVKGVL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             ++ G +      L        R ++  ++ AL+  T    L+ P++  +  + A    
Sbjct: 454 SAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPSIVTMDNEEAYIVV 513

Query: 290 GGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVI 341
           G    + T S +T +T +  +      D GV L   P +   G + L ++ EVS  +   
Sbjct: 514 GQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGEGGTVRLEVEQEVSAVQDSR 573

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G  A D+ + + R   T V    G T+VL GL+ DD    ++GIP LS IP +G LFR+ 
Sbjct: 574 G-QAADLVTSK-RAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRLFRSD 631

Query: 402 RFNREETEIFIAATPFLV 419
             +  +  + +   P +V
Sbjct: 632 NRSNVKRNLLVFIHPTIV 649


>gi|312882862|ref|ZP_07742594.1| general secretion pathway protein D [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369381|gb|EFP96901.1| general secretion pathway protein D [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 674

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 13/161 (8%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSP 325
           L+ P++T +    ASF  G + +     S+ G+       +V   + G+ L   P +   
Sbjct: 460 LSSPSITVMDNGEASFIVG-EEVPVITGSAAGSNNENPFQTVDRKEVGIKLKVVPQINEG 518

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
             + L+I+ EVS  V+G N      +  R+ +T+V +  G  IVL GL+ +   + +  +
Sbjct: 519 NSVQLKIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVEDGQMIVLGGLIDERALESESKV 577

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           PLL  IP LG LF+++R   E+  + +      +KP  +RD
Sbjct: 578 PLLGDIPYLGHLFKSTRTQVEKKNLMV-----FIKPTIIRD 613


>gi|312794853|ref|YP_004027775.1| general secretion pathway protein D [Burkholderia rhizoxinica HKI
           454]
 gi|312166628|emb|CBW73631.1| General secretion pathway protein D [Burkholderia rhizoxinica HKI
           454]
          Length = 847

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 18/187 (9%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLYKTVSSSTGATS 306
           F    +L AL  ++    L+ P L  +  + A    G       G +   T +++T  ++
Sbjct: 504 FGLGGLLQALATSSDTNILSTPNLITLDNEEARIVVGQNVPVVTGSYATPTANTTTSVSA 563

Query: 307 VTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVE 361
             T    D G+ LH  P +   G + L+I  E S    G   N G + S   R   +TV 
Sbjct: 564 FNTFDRQDVGITLHIKPQISEGGVLKLQIYQEDSAVQQGTQSNPGGV-SITKRSIQSTVL 622

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              G  IVL GL++D+       +P L  IP+LG+LFR+    R ++ + +      ++P
Sbjct: 623 ADDGEIIVLGGLIQDNYANGNSKVPWLGNIPVLGSLFRSESKTRTKSNLMV-----FLRP 677

Query: 422 VAMRDLS 428
           V +RD S
Sbjct: 678 VIVRDQS 684


>gi|239907473|ref|YP_002954214.1| general secretion pathway protein D precursor [Desulfovibrio
           magneticus RS-1]
 gi|239797339|dbj|BAH76328.1| general secretion pathway protein D precursor [Desulfovibrio
           magneticus RS-1]
          Length = 685

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 16/202 (7%)

Query: 236 GKFVSEGGD------FSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           G FV   G       F VK G +   + + +++A +   +   +A P L  +  + A+ T
Sbjct: 441 GAFVPPAGGSLGGLAFPVKIGEVIYSNLQAMINASKSDNSFNIIATPQLMTLDNEEATIT 500

Query: 289 SGGQHLYKT---VSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVS---EP 339
                 Y T   V  ST        DY   G  L  TP +     I L+++ E S   E 
Sbjct: 501 VAENRPYLTSQDVGQSTTDRPYQRFDYKDVGTTLKVTPQINEGDSIKLKVKQETSRIDET 560

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           V        P+ R R  +TT+   +G TIVL+GL+     +    +P L  +P++G LF+
Sbjct: 561 VTKETGALQPTTRKRVTETTIMCRNGETIVLSGLIGKSRAEGNSKVPGLGDVPVVGWLFK 620

Query: 400 NSRFNREETEIFIAATPFLVKP 421
           N     E T +++  TP +  P
Sbjct: 621 NKSVADERTNLYVFITPRITAP 642


>gi|315637872|ref|ZP_07893062.1| general secretory pathway protein D [Campylobacter upsaliensis
           JV21]
 gi|315482113|gb|EFU72727.1| general secretory pathway protein D [Campylobacter upsaliensis
           JV21]
          Length = 468

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 24/201 (11%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+    +F +VL+ L +    + L+ P L A++ Q A  + G    Y+   SS G  + T
Sbjct: 264 GLRANINFNSVLNFLSQNGKTQVLSSPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 323

Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------ 353
           T      +Y    G++L   P +    +I LRI   +S+     +     S R       
Sbjct: 324 TVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPRTIAPDTI 383

Query: 354 -RKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALFRNSRFNREETEI 410
            +K  T V + +  T++L GL+  +  Q+KE   +  LSKIP+LG LF     +   TEI
Sbjct: 384 QKKLSTVVSMENNQTLILGGLISHN--QIKEASEVNFLSKIPLLGLLFSGDETSSNSTEI 441

Query: 411 FIAATPFLVKP----VAMRDL 427
               TP +V      ++++DL
Sbjct: 442 VFIITPSIVDKQMGILSLKDL 462


>gi|22127358|ref|NP_670781.1| hypothetical protein y3484 [Yersinia pestis KIM 10]
 gi|108809090|ref|YP_653006.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua]
 gi|108810716|ref|YP_646483.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516]
 gi|145597787|ref|YP_001161863.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F]
 gi|167466374|ref|ZP_02331078.1| hypothetical protein YpesF_00430 [Yersinia pestis FV-1]
 gi|229837375|ref|ZP_04457538.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Pestoides A]
 gi|229840587|ref|ZP_04460746.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842863|ref|ZP_04463015.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900911|ref|ZP_04516035.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Nepal516]
 gi|294502759|ref|YP_003566821.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003]
 gi|21960442|gb|AAM87032.1|AE013951_7 hypothetical [Yersinia pestis KIM 10]
 gi|108774364|gb|ABG16883.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516]
 gi|108781003|gb|ABG15061.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua]
 gi|145209483|gb|ABP38890.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F]
 gi|229682250|gb|EEO78342.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Nepal516]
 gi|229690130|gb|EEO82187.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696953|gb|EEO87000.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229705498|gb|EEO91508.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Pestoides A]
 gi|262360791|gb|ACY57512.1| hypothetical protein YPD4_0603 [Yersinia pestis D106004]
 gi|262364736|gb|ACY61293.1| hypothetical protein YPD8_0603 [Yersinia pestis D182038]
 gi|294353218|gb|ADE63559.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003]
 gi|320016744|gb|ADW00316.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 284

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 107/239 (44%), Gaps = 24/239 (10%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           I++V  ++  V VS    AD  +    ++ ++ K  G A   L   + + +    +L+  
Sbjct: 44  IIKVQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNKNHQPISKTRVLVNN 103

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT--IQDSQRAV--ELSETFLSQSGRN 174
            I      +R    DS I +  + ++ +L G   T   +D+  ++  E + +   +    
Sbjct: 104 TINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIASIVGEATASKKEKERET 163

Query: 175 QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
            Y +N   + V+N + +   +QV +K+TI E+ +D  + IG   +   S++G  +    +
Sbjct: 164 SYQSNPEYQGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNSIKSAAGAFQFL--N 221

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           F  + +S                 T++HA+      + LAEP L+ +SG+ ASF  GG+
Sbjct: 222 FNAQSIS-----------------TLVHAINDEAIAKVLAEPNLSVLSGEYASFLVGGE 263


>gi|119475138|ref|ZP_01615491.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2143]
 gi|119451341|gb|EAW32574.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2143]
          Length = 733

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L+ALE       +++P +     Q A   SG +  Y+  SS+ G T+++  +  + L  T
Sbjct: 566 LNALESQGRGEIVSQPKVITGDKQEAIIKSGSEVPYQE-SSANGETTISFKEAVLKLQVT 624

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           P++    RI +++  E+++  IG      N G +P+    +  T V + +G T+VL G+ 
Sbjct: 625 PSITPDDRIIMKL--EINQDSIGTLVPSGNGGVVPTIDTTELTTQVLVGNGETVVLGGVF 682

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +    + +  +P+L  IP LG LF N+   +E+TE  I  TP
Sbjct: 683 RTVDVESESKVPVLGDIPYLGRLFTNTTVTQEKTETLIFITP 724


>gi|120553763|ref|YP_958114.1| type IV pilus secretin PilQ [Marinobacter aquaeolei VT8]
 gi|120323612|gb|ABM17927.1| type IV pilus secretin PilQ [Marinobacter aquaeolei VT8]
          Length = 704

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 3/176 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F++    D F  +  L ALE       +++P +     Q+AS  SG +  Y+  +SS GA
Sbjct: 527 FAIGWGSDDFLVDLELSALESDGRAEVVSQPRVVTADRQTASIKSGEEIPYQEATSS-GA 585

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           T++   +  + L  TP +    +I + +   V++   G     +PS    +  T V + +
Sbjct: 586 TNIEFKEAVLSLEVTPQITPDDKIIMDLV--VNQDSRGEVTAGIPSINTNEVTTQVLVAN 643

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T+VL G+ + ++       P L  IP LG LF+ +    E +E+ I  TP ++K
Sbjct: 644 GETVVLGGIFQSEVATQTTKTPFLGDIPYLGRLFKRTEHIDERSELLIFITPKIIK 699


>gi|153871180|ref|ZP_02000417.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           PS]
 gi|152072356|gb|EDN69585.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           PS]
          Length = 442

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 110/267 (41%), Gaps = 34/267 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS-SGP--------SKSFAADFG--GKFVSEGG 243
           QV ++  IAE+  D  +++G Q  + G+  + P        S +  AD    G   +   
Sbjct: 138 QVLVEAVIAEISTDTARELGVQWLLYGNKGTAPFGLSNFDNSGTRIADLASAGYLANNNS 197

Query: 244 DFSVKGV-------LDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSG- 290
             S+  +       L RF+     F  +L AL   T    L+ P+L  +  Q A    G 
Sbjct: 198 STSLPNIGAGAFLGLGRFNNSFLNFGVLLRALASDTNTNVLSTPSLLTLDNQEAEIVVGQ 257

Query: 291 ------GQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
                 GQ+     S   G T    ++   D G+ L   P +     + L I+ EVS   
Sbjct: 258 NVPFVTGQYTNTGTSGGGGVTNPFQTIQREDIGIKLRVKPQINEGNAVKLEIEQEVSSLS 317

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               A        R   TTV +  G  +VL GL+ +D+QQ  + +P L  +PI+G LFR+
Sbjct: 318 RSSQATTDIVTNKRTIKTTVIVEDGNMVVLGGLIDEDLQQTAQKVPGLGDLPIIGHLFRS 377

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDL 427
               + +  + +   P +++  A  ++
Sbjct: 378 RSTQKIKRNLMVFLHPVIIRDAASENI 404


>gi|78224554|ref|YP_386301.1| type II and III secretion system protein:NolW-like [Geobacter
           metallireducens GS-15]
 gi|78195809|gb|ABB33576.1| type II and III secretion system protein:NolW-like protein
           [Geobacter metallireducens GS-15]
          Length = 636

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 17/241 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG----DFSVKGV 250
           QV ++  IAEV  D  K++G Q +++G  +  + + A  F   F   GG      ++  V
Sbjct: 361 QVFVQAVIAEVSLDKAKELGLQLAVSGGGTAGNTAEAGVFD-PFNFVGGASPQQAAILNV 419

Query: 251 LDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSST 302
           L  F+  +      VL AL    A+  L+ P +     + A    G     L +T  +ST
Sbjct: 420 LTGFAGSSNLQLGGVLKALISNGAVNVLSTPNILTSDNKEAEIFVGENVPFLTQTNLTST 479

Query: 303 GAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTT 359
           G +  S+   D G+ L  TP +     + L I  E+S     V  A D+ + + R A T 
Sbjct: 480 GLSQQSIERKDTGITLRITPQISEGEFVKLDIYQEISAVKDSVGQAKDLVTTK-RSAKTA 538

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V +    T+V+ GL++D   +    IP+L  IP+LG  F+     RE+T + I  TP ++
Sbjct: 539 VVVKDKDTVVIGGLIQDRDTETINKIPILGDIPLLGWFFKTKSARREKTNLMIVLTPRII 598

Query: 420 K 420
           +
Sbjct: 599 R 599


>gi|222823425|ref|YP_002574999.1| type II protein secretion system D protein CtsD [Campylobacter lari
           RM2100]
 gi|222538647|gb|ACM63748.1| putative type II protein secretion system D protein CtsD
           [Campylobacter lari RM2100]
          Length = 463

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 124/291 (42%), Gaps = 46/291 (15%)

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
           Y  +  +K +  LN   + QV + V+I  V           H     SSG +     D  
Sbjct: 190 YELARVEKYLKDLNKRLKKQVLIDVSIVAV-----------HLNKSHSSGIN---WQDLA 235

Query: 236 GKFVSEGGDF-----SVKGVLDRFSFET--VLHALERATAIRTLAEPTLTAISGQSASFT 288
            K   +  DF      VK +  + + ET  +L+ L+       L+ P L A++ Q A  +
Sbjct: 236 FKLNGDDNDFIINKGGVKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIIS 295

Query: 289 SGGQHLYKTVSSSTGATSVTT-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            G    Y+   SS G  + TT     ++Y    G++L+  P +    +I LRI   +S+ 
Sbjct: 296 IGDTINYQVKESSKGTENGTTISETYNNYSIFVGILLNILPEISDDHKIMLRINPSLSDF 355

Query: 340 VIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
              V+           P    +K  T VE+  G T++L GL+  +       +  LSKIP
Sbjct: 356 KYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKNTISNHNEVSALSKIP 415

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRD----LSRPDDHYSVEDD 439
           + GALF+  + N E+    I+   F++KP  +R     LS  +  +  EDD
Sbjct: 416 LFGALFQGKQ-NLED----ISEIVFIIKPSLIRADKKVLSLKELGFEHEDD 461


>gi|262166650|ref|ZP_06034387.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus VM223]
 gi|262026366|gb|EEY45034.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus VM223]
          Length = 545

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q A    G +  Y   SSS+GAT+V+     + L  T
Sbjct: 383 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVT 441

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 442 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 501

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 502 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 543


>gi|317407154|gb|EFV87149.1| general secretion pathway protein D [Achromobacter xylosoxidans
           C54]
          Length = 870

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 17/189 (8%)

Query: 247 VKGVLDRFSFETV-----LHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHL 294
           VKG +D    + +       A++       L+ P L  +  QSAS   G       GQ++
Sbjct: 494 VKGTVDVLGNKVINLGVLARAMQNTGEANILSTPNLLTLDNQSASILVGKTVPFVTGQYV 553

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSY 351
               +++    ++   D G+ L+  P +   G + L I  EVS   E       G + + 
Sbjct: 554 TNGGNNNNPFQTIQREDVGLKLNIRPQISEGGAVKLDIYQEVSSIDESRSSATTGIVTNK 613

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           R    DT+V +  G  IVL GLL+D++      +P LS IP+LG+LF+     R +T + 
Sbjct: 614 RA--IDTSVLIDDGQIIVLGGLLEDNVTLTSNNVPGLSSIPVLGSLFKYDSRKRTKTNLM 671

Query: 412 IAATPFLVK 420
           +   P++V+
Sbjct: 672 VFLRPYVVR 680


>gi|330820184|ref|YP_004349046.1| type II and III secretion system protein [Burkholderia gladioli
           BSR3]
 gi|327372179|gb|AEA63534.1| type II and III secretion system protein [Burkholderia gladioli
           BSR3]
          Length = 697

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 27/244 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKF---------VSE 241
           + +VTL V + EV  +    +G Q+   I  S+ G  +      G             SE
Sbjct: 323 QSEVTLDVQVLEVNVNDSVDLGLQYPGKIQFSALGAGEEVGLTLGDLLRLNRDRIGVASE 382

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S+            +  L++    RTLA P +   + + A+   G +    T ++ 
Sbjct: 383 SGALSM-----------AIDMLQKQGKTRTLANPKIRVRNLEKANIRIGERVPIVTTTNG 431

Query: 302 TG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRV--RKA 356
            G    SV+  D G++L   P V     + +++  EVS  +        + +Y +  R A
Sbjct: 432 NGVVTESVSYQDVGLMLKVQPRVSLDDEVSVKVSLEVSNILSEQRTRSGLVAYSLGTRNA 491

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT +   +G T VLAGL+K    + + G+P LS +P+LG LF + R   EETEI +  TP
Sbjct: 492 DTLMTARNGQTQVLAGLIKRSEIESRAGLPWLSSLPVLGRLFGSERTRNEETEIVLLITP 551

Query: 417 FLVK 420
            + +
Sbjct: 552 HIER 555


>gi|325529100|gb|EGD06093.1| putative secretion type II protein [Burkholderia sp. TJI49]
          Length = 608

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 109/242 (45%), Gaps = 21/242 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           E +V L+V + EV  D + Q+G     + + S PS   A  +G          +V G+  
Sbjct: 311 EPEVMLEVEVLEVSHDRMSQLGINWPNSFTVSTPSS--ADTWGVLHHLPINALNVSGLSA 368

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATS 306
              F+         T    LA P + A + + A    G +          + S  +    
Sbjct: 369 TADFKLT------DTDANLLASPRIRARNKEKARIMIGDKVPVISSSSTPSTSGPSFTQM 422

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-----SYRV--RKADTT 359
           +   D G+ L   P V   G +G+++  EVS     +++G+       +Y++  R A T+
Sbjct: 423 IQYLDVGIKLEVEPQVYRDGDVGIKLNLEVSNITNTISSGNSQGLSSLAYQIGTRSASTS 482

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T ++ GL+ D+ ++    +P L ++P+LG LF +   + ++TEI +  TP +V
Sbjct: 483 LRLRDGETQIMGGLISDEDRRNANKVPGLGQLPVLGRLFSDHGGDHKKTEIVLQITPHIV 542

Query: 420 KP 421
           +P
Sbjct: 543 RP 544


>gi|323497014|ref|ZP_08102037.1| general secretion pathway protein D [Vibrio sinaloensis DSM 21326]
 gi|323317858|gb|EGA70846.1| general secretion pathway protein D [Vibrio sinaloensis DSM 21326]
          Length = 675

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 37/220 (16%)

Query: 233 DFGGKFV-----SEGGDF--------SVKGVLDRF---SFETVLHALERATAIRTLAEPT 276
           D  G+FV     +E GDF        SV G         +  ++ A+   +    L+ P+
Sbjct: 406 DSDGEFVRNETTTEKGDFTTLAAALSSVNGAALSVVMGDWTALISAVSTDSNSNILSSPS 465

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPG 326
           +T +    ASF  G     + V   TG+T+ + +D           G+ L   P +    
Sbjct: 466 ITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGN 520

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            + L+I+ EVS  V+G N      +  R+ +T+V +  G  IVL GL+ +   + +  +P
Sbjct: 521 SVQLKIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVEDGQMIVLGGLIDERALESESKVP 579

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           LL  IP+LG LF+++    E+  + +      +KP  +RD
Sbjct: 580 LLGDIPVLGHLFKSTNTQVEKKNLMV-----FIKPTIIRD 614


>gi|223938170|ref|ZP_03630067.1| peptidase M56 BlaR1 [bacterium Ellin514]
 gi|223893214|gb|EEF59678.1| peptidase M56 BlaR1 [bacterium Ellin514]
          Length = 1633

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 97/189 (51%), Gaps = 6/189 (3%)

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           VS   +    G+L    ++  +  LE A+ I  L  P++   SG+ A   +    L + +
Sbjct: 431 VSAPKEQCFTGMLTGPQYQAAVKQLEMASCIDMLTAPSVITQSGRQAQIQA--VDLIEIL 488

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKA 356
           ++++ + +     +G VL   PTV +P ++G+++ T ++   + ++A    +P  +  + 
Sbjct: 489 TNASPSAAKMQLPFGPVLDVLPTV-TPDKLGVQL-TGIATVTMLLDAPSVVLPRIQFTQL 546

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T + L  G T+V+ GL+ + I  +K+ +P+L+ IP+ G LFR+   ++    + +  TP
Sbjct: 547 STEMTLKDGQTLVMGGLMPETITIVKDRVPVLADIPLAGRLFRSGSTSKSRKYLIVFVTP 606

Query: 417 FLVKPVAMR 425
            L+ P   R
Sbjct: 607 TLINPDGSR 615


>gi|261211295|ref|ZP_05925584.1| type II secretory pathway component PulD [Vibrio sp. RC341]
 gi|260839796|gb|EEX66407.1| type II secretory pathway component PulD [Vibrio sp. RC341]
          Length = 675

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 21/181 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  ++ A+   +    L+ P++T +    ASF  G     + V   TG+T+ + +D    
Sbjct: 444 WTALISAVSNDSKSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 498

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L   P +     + L+I+ EVS  V+G N      +  R+ +T+V +  G
Sbjct: 499 TVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDG 557

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + +      +KP  +R
Sbjct: 558 QMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIR 612

Query: 426 D 426
           D
Sbjct: 613 D 613


>gi|258625707|ref|ZP_05720586.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM603]
 gi|258581945|gb|EEW06815.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM603]
          Length = 571

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q A    G +  Y   SSS+GAT+V+     + L  T
Sbjct: 409 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVT 467

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 468 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 527

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 528 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569


>gi|258620495|ref|ZP_05715533.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM573]
 gi|258587374|gb|EEW12085.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM573]
          Length = 572

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q A    G +  Y   SSS+GAT+V+     + L  T
Sbjct: 410 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVT 468

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 469 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 528

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 529 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 570


>gi|238751132|ref|ZP_04612627.1| Protein transporter HofQ [Yersinia rohdei ATCC 43380]
 gi|238710610|gb|EEQ02833.1| Protein transporter HofQ [Yersinia rohdei ATCC 43380]
          Length = 376

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 12/233 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------GKFVSEGGDFSVK 248
           QV L   I  + R+ L+++G +  + G +   S     DF        + +S G  F+V 
Sbjct: 146 QVQLAAHIVTISRENLQELGVRWGM-GEAKQNSSLRMNDFNVNLPLPNRVISAG--FNVA 202

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
            +  R     +    E+   I  +A P L A   Q+AS   G    Y       G ++V 
Sbjct: 203 RIGGRLLELELSAL-EQENQIDIIASPHLVASHQQTASIKQGSDIPYTVSKGKKGISTVE 261

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGG 366
             +  + +  TP +L  G+I L ++   + P + +  GD  +  + K +  T + +  G 
Sbjct: 262 FKEAVLGMEVTPKILRNGKITLDLKISQNMPGMAMKRGDSETLLIDKQEIKTQITVNDGE 321

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           TIVL G+ +    Q    +P+L+ IP LG LF+     +   E+ I  TP L+
Sbjct: 322 TIVLGGIFQQKSTQGVHKVPVLADIPWLGVLFKQDAQQQSRRELVIFITPKLI 374


>gi|157163858|ref|YP_001466818.1| PP family ATPase [Campylobacter concisus 13826]
 gi|157101371|gb|EAT98651.2| type II and III secretion system protein [Campylobacter concisus
           13826]
          Length = 508

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 110/246 (44%), Gaps = 31/246 (12%)

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAI 269
           ++GF   I    S  S   +    G  +S+G     ++   L+ FS + +++ LE     
Sbjct: 256 ELGFNSYIGNPGSSTSSYASWTNKGNSLSDGFGRTLNIAANLN-FSLDGMINFLETNGKT 314

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDY----GVVLH 317
           + ++ P +T ++ Q A  + G    Y+ +  +   +        + T   Y    G++L+
Sbjct: 315 KVVSSPKVTTLNNQQALISVGDNINYRVMEETDNGSNNNNNNRLTTTYKQYSVFIGILLN 374

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR---------KADTTVELPSGGTI 368
             P V    +I LRI   +S      +     +  +R         K  T V++ SG TI
Sbjct: 375 LLPEVSDNNKIMLRINPSLSSFKYAEDDTRSQNTAIREIAPDTVQKKLSTVVQVNSGDTI 434

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-----KPV- 422
           +L GL+     +    +PLL+ IP++G++F+++R     TE+    TP +V     KPV 
Sbjct: 435 ILGGLIGQTKDKQNTAVPLLADIPLIGSVFKSTRDGVRTTELIFVITPRVVDLEDAKPVQ 494

Query: 423 -AMRDL 427
            +++DL
Sbjct: 495 QSLKDL 500


>gi|262170433|ref|ZP_06038111.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus MB-451]
 gi|261891509|gb|EEY37495.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus MB-451]
          Length = 567

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q A    G +  Y   SSS+GAT+V+     + L  T
Sbjct: 405 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVT 463

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 464 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 523

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 524 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 565


>gi|262170336|ref|ZP_06038014.1| type II secretory pathway component PulD [Vibrio mimicus MB-451]
 gi|261891412|gb|EEY37398.1| type II secretory pathway component PulD [Vibrio mimicus MB-451]
          Length = 675

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 21/181 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  +++A+   +    L+ P++T +    ASF  G     + V   TG+T+ + +D    
Sbjct: 444 WTALINAVSNDSKSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 498

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G
Sbjct: 499 TVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDG 557

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + +      +KP  +R
Sbjct: 558 QMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIR 612

Query: 426 D 426
           D
Sbjct: 613 D 613


>gi|258620393|ref|ZP_05715431.1| general secretion pathway protein D [Vibrio mimicus VM573]
 gi|258624627|ref|ZP_05719563.1| general secretion pathway protein D [Vibrio mimicus VM603]
 gi|258583091|gb|EEW07904.1| general secretion pathway protein D [Vibrio mimicus VM603]
 gi|258587272|gb|EEW11983.1| general secretion pathway protein D [Vibrio mimicus VM573]
          Length = 675

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 21/181 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  +++A+   +    L+ P++T +    ASF  G     + V   TG+T+ + +D    
Sbjct: 444 WTALINAVSNDSKSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 498

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G
Sbjct: 499 TVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDG 557

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + +      +KP  +R
Sbjct: 558 QMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIR 612

Query: 426 D 426
           D
Sbjct: 613 D 613


>gi|281354921|ref|ZP_06241415.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281317801|gb|EFB01821.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 794

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 12/183 (6%)

Query: 249 GVLDRFSFET---VLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTG 303
           G+ D+ + E     L AL     I+ ++ P L   S  +A    G     L + +++S  
Sbjct: 553 GIFDKDNPEENFGYLRALAGRDNIKVISSPQLLVTSNTTAKIQVGQDVPILTQDLTTSDS 612

Query: 304 ATSVTTHDY-----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           AT   T  Y     G++L   P V S   I ++I+ +VSE +     +A D P    R  
Sbjct: 613 ATGNVTRSYTYEETGIILSLIPQVTSTDLISMQIEQKVSEAIKNTITSATDTPVISTRVL 672

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T + + +G T+V+ G++++      + +P+++ IP L   F N+  + E TE+ +  T 
Sbjct: 673 NTAMTIANGKTMVIGGMIQEKNNDRLQSVPIIADIPFLRRFFGNTNQSVERTELLVLVTG 732

Query: 417 FLV 419
           ++V
Sbjct: 733 YIV 735


>gi|78777581|ref|YP_393896.1| type II and III secretion system protein [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498121|gb|ABB44661.1| type II and III secretion system protein [Sulfurimonas
           denitrificans DSM 1251]
          Length = 563

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 17/183 (9%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGAT--SVTT 309
           F+   ++  L+    + +++ P +  ++ Q A  T+G ++ YK +S S  T  T  SVTT
Sbjct: 341 FTINNIIKFLKTQGDVSSISNPKVLTLNNQPALITAGTEYFYKIISDSLSTAGTGGSVTT 400

Query: 310 HDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAGDMPSYRVRKA 356
            +        GV+L  TP +     I L+I   +SE         GV     P  R R+ 
Sbjct: 401 QNQDLQSVFAGVLLDITPEISDDNMITLKINPSLSETTTDISITPGVERTMPPDLRRRQL 460

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            + V L  G  I+L GL+          +P+L  IPIL  LF+     +   E+ I   P
Sbjct: 461 SSVVTLRDGERIILGGLINTSNSIDVNKVPILGDIPILNYLFKYENRLKTTQELVIVIEP 520

Query: 417 FLV 419
            +V
Sbjct: 521 HIV 523


>gi|331004879|ref|ZP_08328296.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC1989]
 gi|330421333|gb|EGG95582.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC1989]
          Length = 553

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 100/201 (49%), Gaps = 25/201 (12%)

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSST--GATSVTTHD--- 311
           T+L  LE    ++ L+ P ++ ++ Q A    G    + T +S+ST   A+S T+     
Sbjct: 347 TLLSLLETQGEMQVLSSPRVSTVNNQKAVIRVGTDQFFVTGISNSTISNASSTTSSPDIE 406

Query: 312 -----YGVVLHFTPTVLSPGRIGLRIQ---TEVSEP----VIGVNAGDMP-SYR-VRKAD 357
                 G+ L  TP +   G + L I    + V+E     V+G +A  +P + R +R++D
Sbjct: 407 LSSFFSGISLDVTPQISDEGDVILHIHPVISTVTEEQKNIVVGDSAFSLPLALRDIRESD 466

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           + V+  SG  IVL GL+++ I  +    P LS IP+ G LF ++   R ++E+ I     
Sbjct: 467 SIVKAKSGQVIVLGGLMQERINHVGGKRPGLSDIPVAGGLFNSNTDIRSKSELII----- 521

Query: 418 LVKPVAMRDLSRPDDHYSVED 438
           L+KP  +   S  DD  + +D
Sbjct: 522 LLKPTVVEQDSWVDDFNTSQD 542


>gi|262166741|ref|ZP_06034478.1| type II secretory pathway component PulD [Vibrio mimicus VM223]
 gi|262026457|gb|EEY45125.1| type II secretory pathway component PulD [Vibrio mimicus VM223]
          Length = 653

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 21/181 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  +++A+   +    L+ P++T +    ASF  G     + V   TG+T+ + +D    
Sbjct: 422 WTALINAVSNDSKSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 476

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G
Sbjct: 477 TVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDG 535

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + +      +KP  +R
Sbjct: 536 QMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIR 590

Query: 426 D 426
           D
Sbjct: 591 D 591


>gi|288574989|ref|ZP_06393346.1| type II and III secretion system protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570730|gb|EFC92287.1| type II and III secretion system protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 570

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 9/180 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            +T L AL  A   + LA P++  +SGQ AS        Y +     G  + +  + G  
Sbjct: 392 LDTGLKALVTANKGKVLANPSVITVSGQKASIKLVENLKYISARDDAGNPTYSDEEVGPK 451

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTVELPSGGTIVLA 371
           L FTP V   G I + +     E VI    G    + P    R+  T++ +  G   V+ 
Sbjct: 452 LEFTPLVGRDGVISVELSIATGE-VIAWKEGNQGEEFPQTSEREVVTSIRVRDGEPFVVG 510

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----PVAMRDL 427
           GL  +   +    IP+L  IP+LG  F++     + TE+ +   P+++     P+   DL
Sbjct: 511 GLFNERHTENTTKIPILGDIPLLGEFFKSKSKTDDRTEVVMVVIPYILNVTDGPIERWDL 570


>gi|269103695|ref|ZP_06156392.1| putative type II secretory pathway component EpsD [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163593|gb|EEZ42089.1| putative type II secretory pathway component EpsD [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 579

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 11/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTH 310
           +  +++A+        L+ P++T +  Q A  + G +   +T S+S+       T+V   
Sbjct: 350 WTALVNAVRTNRNANVLSTPSITVLDNQEAELSVGQEVPVQTGSTSSSNNDNPFTTVERK 409

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           D G+ L  TP +     + L I+  VS+      A D+  +  R+ +T V +  G  I L
Sbjct: 410 DVGIQLTVTPQINEGDSVKLDIKQVVSQVADAQGAVDI-RFDKRELNTAVLVKDGSMIAL 468

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            G++++   + +  +P+L  IP+LG+LFR++     +T + I      +KP  +RD
Sbjct: 469 GGMMQEKALESESKVPILGDIPVLGSLFRSTNNETVKTNLLI-----FIKPTIIRD 519


>gi|82703698|ref|YP_413264.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
 gi|82411763|gb|ABB75872.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
          Length = 749

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 13/169 (7%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSP 325
           I  LA P +   + + A    G +    T +++     A+SV+  D G+ L    T+   
Sbjct: 411 INVLANPRIRVKNREKAKVLIGDKVPVVTTTAAANVGVASSVSYLDVGLKLDVESTISLQ 470

Query: 326 GRIGLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQL 381
             + +++  EVS  V  + V  G + +Y+V  R A TT+ L  G T VLAGL+ DD +  
Sbjct: 471 DEVSMKVSLEVSNIVKEVPVTGGGL-AYQVGTRTAATTLALKDGETQVLAGLISDDERTT 529

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
              +P L+++P +G LF N    R +TEI +  TP +V     R+++RP
Sbjct: 530 LSKVPGLAELPWIGKLFINKNVVRNKTEIALLITPRIV-----RNIARP 573


>gi|1170050|sp|P31780|GSPD_AERHY RecName: Full=General secretion pathway protein D; Flags: Precursor
 gi|551421|emb|CAA47124.1| ExeD [Aeromonas hydrophila]
          Length = 678

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 16/181 (8%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTT--- 309
           ++  ++ AL   T    L+ P++  +  + ASF  G +   +T   +S++G T+ +T   
Sbjct: 429 NWAMLVTALSTNTKSDILSTPSIVTMDNKEASFNVGQEVPVQTGTQNSTSGDTTFSTIER 488

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----GDMPSYRVRKADTTVELPSG 365
              G  L  TP +     + L I+ EVS   +G  A    G  P++  R     V + SG
Sbjct: 489 KTVGTKLVVTPQINEGDSVLLTIEQEVSS--VGKQATGTDGLGPTFDTRTVKNAVLVKSG 546

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T+VL GL+ +  ++    +PLL  IP+LG LFR++  N  +  + +      ++P  +R
Sbjct: 547 ETVVLGGLMDEQTKEEVSKVPLLGDIPVLGYLFRSTSNNTSKRNLMV-----FIRPTILR 601

Query: 426 D 426
           D
Sbjct: 602 D 602


>gi|254787478|ref|YP_003074907.1| fimbrial assembly protein PilQ [Teredinibacter turnerae T7901]
 gi|237686656|gb|ACR13920.1| fimbrial assembly protein PilQ [Teredinibacter turnerae T7901]
          Length = 727

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 6/191 (3%)

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           P  SF  D G    +  G  +   + + F     L AL+ +     +++P +     Q A
Sbjct: 534 PQNSFV-DLG--VFNPTGSLAWNVISNNFMIGMELSALQDSGFAEIVSQPKVITGDKQQA 590

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           S  SG    ++  S+S G T+++  D  + L  TP +    RI + ++  + + V G  +
Sbjct: 591 SIQSGTSVPFQEESAS-GGTTISFKDVVLRLDVTPQITPDNRIIMDLEI-LQDSVTGYES 648

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           G +P   +   DT+V +  G T+VL G+   + ++ +  +PLL  IP+LG LFR      
Sbjct: 649 G-VPIIDITHLDTSVLVADGDTVVLGGIYATEQRKGQSKVPLLGDIPLLGRLFRYDISQE 707

Query: 406 EETEIFIAATP 416
           ++ E+ I  TP
Sbjct: 708 DKRELLIFITP 718


>gi|238764794|ref|ZP_04625736.1| General secretion pathway protein D [Yersinia kristensenii ATCC
           33638]
 gi|238696992|gb|EEP89767.1| General secretion pathway protein D [Yersinia kristensenii ATCC
           33638]
          Length = 635

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 17/196 (8%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
           +++ +  AL   +    LA P++  +    A F  G Q +    S+ T AT     S++ 
Sbjct: 402 NWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 460

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPS-YRVRKADTTVELPSGG 366
              GV+L   P +     + L I+ EVS      G NA ++ S +  R  +  V + SG 
Sbjct: 461 QSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSGTNANNLGSVFNKRVVNNAVLVKSGE 520

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T+V+ GLL   + ++   +P L  IP++G LF+  + N E++ + +      ++P  +R+
Sbjct: 521 TVVVGGLLDKKLSKVINKVPFLGDIPLIGRLFQQRKENIEKSNLIL-----FIRPTILRE 575

Query: 427 LSRPDDHYSVEDDAKA 442
               +D+  V  D  A
Sbjct: 576 ---TNDYSKVTADKYA 588


>gi|261344685|ref|ZP_05972329.1| protein transport protein HofQ [Providencia rustigianii DSM 4541]
 gi|282567605|gb|EFB73140.1| protein transport protein HofQ [Providencia rustigianii DSM 4541]
          Length = 346

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 107/231 (46%), Gaps = 10/231 (4%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGV- 250
           + QV +   I    R  L+ +G +  + G  ++ P  S       ++ +E G  ++  + 
Sbjct: 120 QQQVQITAHIVSSTRTALQALGLEWGMLGEMATNPHHSRY----NRYNTEPGKVALNILK 175

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           L     E  L ALE+A  +  +A P L A   + AS   G +  Y  V+++   + V   
Sbjct: 176 LGDGLLEMKLSALEKANLLSIIASPRLVASHQKPASIQQGTEIPY--VTNTDKKSHVQFK 233

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTI 368
           D  + +  TPT+    ++ + ++   + P   +         + K +  T+V + +  T+
Sbjct: 234 DAVLGMEVTPTISRDNKVEMVLKISHNSPDTAITTSQNHHLSINKQEIATSVTIKNNDTL 293

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +L G+ +   ++ + GIP LS++P+LG LF NS  + +   + +  TP L+
Sbjct: 294 ILGGIFQQKQEKTEAGIPFLSQLPLLGNLFTNSFQHIDRRVLIVFITPKLI 344


>gi|253701270|ref|YP_003022459.1| type IV pilus secretin PilQ [Geobacter sp. M21]
 gi|251776120|gb|ACT18701.1| type IV pilus secretin PilQ [Geobacter sp. M21]
          Length = 926

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 21/259 (8%)

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPS-KSF 230
           Q A    K ++  L+ A E QV ++  I E      + +G Q  ++   GS+S     S 
Sbjct: 674 QTALDDMKALLKTLD-APEKQVMIEARIVEATSTFTRDLGVQWGLSYRDGSASMAGINSV 732

Query: 231 AADFGG----------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
              FGG               G   S   +      +  L A      ++ ++ P +  +
Sbjct: 733 DTGFGGVVSAAGPGATGAGGLGLGMSFGKLTSNIKLDMRLAAAATIGQVKIISTPKVVTL 792

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           + ++A  + G    Y+T S+    T     +  + L  TP + + G + ++I+   + P 
Sbjct: 793 NNKAAKISQGQSIPYQTTSAEGTKTEFV--EAALTLEVTPHITADGSVSMKIKASNNSP- 849

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                G  P    ++A T + + +G T V+ G+  D   +   G+P LS IP+LG LF++
Sbjct: 850 ---GTGSPPPINKKEATTELVVSNGDTTVIGGIYVDSETESDTGVPFLSDIPLLGWLFKS 906

Query: 401 SRFNREETEIFIAATPFLV 419
           +   + +TE+ I  TP ++
Sbjct: 907 NAKQKTKTELLIFITPKII 925


>gi|325981841|ref|YP_004294243.1| type IV pilus secretin PilQ [Nitrosomonas sp. AL212]
 gi|325531360|gb|ADZ26081.1| type IV pilus secretin PilQ [Nitrosomonas sp. AL212]
          Length = 698

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 5/159 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     R +A P +    G  A    G +  ++  +SS GATS+   D  + L   
Sbjct: 533 LSALETDQKGRVIASPRVVTAHGVEAIIEQGDRIPFQQATSS-GATSIRFMDATLRLRVK 591

Query: 320 PTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +   G+I + +   V++  IG  +N    P+   ++  T V + +GGT+V+ G+    
Sbjct: 592 PLITYNGQIDMELN--VNQDRIGAIINQFLPPAINTKQVTTKVLVENGGTVVIGGIFDRT 649

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
             ++   +P+L  IP+LG +FRN+     + E+ I  TP
Sbjct: 650 ENRVVNKVPMLGDIPVLGHVFRNTTRVDNKRELLIFVTP 688


>gi|114568932|ref|YP_755612.1| general secretion pathway protein D [Maricaulis maris MCS10]
 gi|114339394|gb|ABI64674.1| general secretion pathway protein D [Maricaulis maris MCS10]
          Length = 650

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 13/188 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  VL+A+E       LA P++ A+  + A F SG Q +  T   + G+       +V  
Sbjct: 426 FGLVLNAVESDVNSNVLATPSIMALDNEEAYFLSG-QEIPVTTGEALGSNNTNPFRTVDR 484

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGT 367
            + GV L   P +     + L I  EVS     VNAG  D+ + + R+  TTV   +G  
Sbjct: 485 EEVGVKLTVLPQITEGNTVRLHIVQEVSSVAGAVNAGSSDLITNK-REISTTVLADNGEI 543

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRD 426
           IVL GL++ + +  ++G+P L ++P +G LFR+       T + +   P +++  A M+ 
Sbjct: 544 IVLGGLIQQEDEISEDGVPGLRRLPGVGRLFRSEGSTTRRTNLMVFIRPTIIRSEADMQA 603

Query: 427 LSRPDDHY 434
           L+  D+ Y
Sbjct: 604 LT--DNRY 609


>gi|295111311|emb|CBL28061.1| Type II secretory pathway, component PulD [Synergistetes bacterium
           SGP1]
          Length = 193

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 3/168 (1%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F+    ALE     + LA P++  I G  A       + Y +     G  + +T   G 
Sbjct: 7   EFDGAFRALEERGKGKALASPSVITIDGMEARVELTQDYPYISERDDAGNPTWSTQTVGP 66

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            +  TP V   G I L +  E  E    + G     MP    R   T V +  G   V+ 
Sbjct: 67  QMTMTPRVGRDGVINLALDLETGEVIQMITGSTGEQMPRTSKRHVTTNVRVRDGEPFVIG 126

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GL  D+  + +  IP+L ++P+LG LF   +    +T++ +   P+++
Sbjct: 127 GLFSDNKSRTRNRIPILGQLPLLGELFTYRQDEHRKTQVVMLVVPYVL 174


>gi|163751006|ref|ZP_02158238.1| MSHA biogenesis protein MshL [Shewanella benthica KT99]
 gi|161329296|gb|EDQ00294.1| MSHA biogenesis protein MshL [Shewanella benthica KT99]
          Length = 560

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 116/263 (44%), Gaps = 25/263 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252
           QV ++  I EV      Q G    ++ G        F    GG  +S+     + GV   
Sbjct: 281 QVIIEAKILEVTLSDGYQQGINWQNVLGHVGDTDIEFGTSTGGGSLSDQITSVIGGVTSL 340

Query: 253 RFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATS 306
           +FS   F T++  L+    +  L+ P +T ++ Q A    G    + T  SST   G T 
Sbjct: 341 KFSGTNFSTMISLLDTQGDVDVLSSPRVTVLNNQKAVIKVGTDEYFVTNVSSTTISGITP 400

Query: 307 VTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV---SEPV----IGVNAGDMPSYR 352
           +TT +        G+ L  TP +   G + L I   V    E +    I  +  ++P  R
Sbjct: 401 ITTPEVELTPFFSGIALDVTPQIDGDGNVILHIHPSVINIKEQIKTIKISGSTLELPLAR 460

Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++DT +   SG  +V+ GL+K +  +L   +PLL  IP +G LF N   + ++TE+
Sbjct: 461 SDIRESDTVIMARSGDVVVIGGLMKSENIELISKVPLLGDIPFIGELFTNRAKSLKKTEL 520

Query: 411 FIAATPFLVK-PVAMRDLSRPDD 432
            I   P +V      ++L R  D
Sbjct: 521 VILLKPTVVGVDTWKKELQRSKD 543


>gi|161523243|ref|YP_001578255.1| general secretion pathway protein D [Burkholderia multivorans ATCC
           17616]
 gi|160340672|gb|ABX13758.1| general secretion pathway protein D [Burkholderia multivorans ATCC
           17616]
          Length = 775

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 19/163 (11%)

Query: 295 YKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPS 350
           Y  ++S T + +  T+D    G+ LH  P +   G + L++ TE S       N+   PS
Sbjct: 544 YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNSQTGPS 603

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R   +T+   +G  IVL GL++D        +PLL  IP +G LFR+    R++T +
Sbjct: 604 FTKRSIQSTILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNL 663

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
            +      ++PV + D           D A+A   NR + I G
Sbjct: 664 MV-----FLRPVIIAD----------RDTAQAVTSNRYDYIQG 691


>gi|127514547|ref|YP_001095744.1| general secretion pathway protein D [Shewanella loihica PV-4]
 gi|126639842|gb|ABO25485.1| general secretion pathway protein D [Shewanella loihica PV-4]
          Length = 707

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 17/179 (9%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S ++         +V  
Sbjct: 449 FGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPVLTGSQNSSNGNSNPFQTVER 508

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGT 367
            + GV L   P +     + L I+ EVS    G+N   G   ++  R+  TTV   SG  
Sbjct: 509 KEVGVKLKVVPQINEGTTVKLTIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQI 564

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +VL GL+ +++Q+  + +P L  IPILG LF++S   +++  + +      +KP  +RD
Sbjct: 565 VVLGGLINEEVQESVQKVPFLGDIPILGHLFKSSSSGKKKKNLMV-----FIKPTIIRD 618


>gi|308272100|emb|CBX28708.1| hypothetical protein N47_G40320 [uncultured Desulfobacterium sp.]
          Length = 818

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 22/239 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSV----KG 249
           QV ++  I E      ++IG    I  + +GP+ S  +  GG + ++   +F      KG
Sbjct: 582 QVVIEARIVEATTSFSREIGV---IWSADAGPNSS--SSLGGTYDLNAAVNFPTTAANKG 636

Query: 250 VL---------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            +           F     L A+E     + ++ P +  +  + A+   G ++ Y  + +
Sbjct: 637 TIGFDFARINGSPFLLNAKLEAMEAQGEGKIVSAPKICTLDNKEATIKQGLRYPYNKLDT 696

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           S G T+    D  + L   P V    RI + I+ +  +  +G+   D  S+  ++A+T +
Sbjct: 697 S-GNTTTVFEDVDLELKVKPHVTPDNRISMLIKIKKRD--LGIFINDQQSFTNKEAETEL 753

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +  G T+V+ G++K         IP LS+IPILG  F++      + E+ I  TP +V
Sbjct: 754 LVNDGDTVVIGGIIKTSKNTGGSLIPGLSRIPILGWFFKSDTKTDNKEELLIFITPKIV 812


>gi|225874165|ref|YP_002755624.1| transporter, outer bacterial membrane secretin (Secretin) family
           [Acidobacterium capsulatum ATCC 51196]
 gi|225794395|gb|ACO34485.1| transporter, outer bacterial membrane secretin (Secretin) family
           [Acidobacterium capsulatum ATCC 51196]
          Length = 583

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 110/256 (42%), Gaps = 42/256 (16%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-KFVSEGGDFSVKGVLDR 253
           +V + VT+ EV RD +++IG           P  S   + G  + + + G  S   +   
Sbjct: 311 EVLVDVTVMEVSRDKMREIGL---------SPPTSLTVNSGSSQTLEQIGHTSAYSI--- 358

Query: 254 FSFETVLHA----LERATAIRTLAEPTLTAISGQSASFTSG-------GQHLYKTVSSST 302
               T+  A    L   +  + L  P L A++G+ AS   G       G + Y T S+S 
Sbjct: 359 ----TIGQAAADFLLTDSNTQILQNPRLRALNGEQASLKLGERLPVATGSYTYATGSTSA 414

Query: 303 GA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKA 356
            A T     D GV +  TP +     + L++  +VS     E + GV   + P     KA
Sbjct: 415 AAETQFQYLDVGVNIDMTPQIHLDHTVTLKLGVDVSSENGTEDLEGV---EEPIISQEKA 471

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              V L +G + +LAGLLK ++ Q   G P   +IP +  LF   +      E+    TP
Sbjct: 472 QQIVRLKNGESTILAGLLKKEVSQTVSGWPGFGEIPFMKYLFTTQKHEVTSDELVFMITP 531

Query: 417 FLVK-----PVAMRDL 427
            +++     P+ MR++
Sbjct: 532 HIIRSPQVDPLTMREI 547


>gi|212633381|ref|YP_002309906.1| type II and III secretion system protein:secretin [Shewanella
           piezotolerans WP3]
 gi|212554865|gb|ACJ27319.1| Type II and III secretion system protein:Secretin [Shewanella
           piezotolerans WP3]
          Length = 558

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 19/183 (10%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY 312
           F T++  L+    +  L+ P +TA + Q A    G    + T  SST   G T VTT + 
Sbjct: 352 FSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPEV 411

Query: 313 -------GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD------MPSYRVRKA 356
                  G+ L  TP + + G + L I     ++ E    +   D      +    +R++
Sbjct: 412 ELTPFFSGIALDVTPQIDAEGNVLLHIHPSVIDIKEQTKTIKISDSTLELPLAQSEIRES 471

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT ++  SG  +V+ GL+K +  +L   +PLL  IP LG  F N   +  +TE+ I   P
Sbjct: 472 DTVIKAASGDVVVIGGLMKSENIELVSKVPLLGDIPYLGEAFTNRANSTVKTELVILLKP 531

Query: 417 FLV 419
            +V
Sbjct: 532 VVV 534


>gi|22127080|ref|NP_670503.1| general secretion pathway protein D [Yersinia pestis KIM 10]
 gi|45442607|ref|NP_994146.1| general secretion pathway protein D [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806450|ref|YP_650366.1| general secretion pathway protein D [Yersinia pestis Antiqua]
 gi|108813180|ref|YP_648947.1| general secretion pathway protein D [Yersinia pestis Nepal516]
 gi|145597997|ref|YP_001162073.1| general secretion pathway protein D [Yersinia pestis Pestoides F]
 gi|153949658|ref|YP_001399937.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
           31758]
 gi|162421010|ref|YP_001607617.1| general secretion pathway protein D [Yersinia pestis Angola]
 gi|166010333|ref|ZP_02231231.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212712|ref|ZP_02238747.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399809|ref|ZP_02305327.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167425419|ref|ZP_02317172.1| general secretion pathway protein D [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229837688|ref|ZP_04457848.1| general secretion pathway protein D [Yersinia pestis Pestoides A]
 gi|229903625|ref|ZP_04518738.1| general secretion pathway protein D [Yersinia pestis Nepal516]
 gi|270487407|ref|ZP_06204481.1| general secretion pathway protein D [Yersinia pestis KIM D27]
 gi|294503003|ref|YP_003567065.1| general secretion protein [Yersinia pestis Z176003]
 gi|21960134|gb|AAM86754.1|AE013921_5 putative general secretion protein [Yersinia pestis KIM 10]
 gi|45437472|gb|AAS63023.1| putative general secretion protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108776828|gb|ABG19347.1| general secretion pathway protein D [Yersinia pestis Nepal516]
 gi|108778363|gb|ABG12421.1| general secretion pathway protein D [Yersinia pestis Antiqua]
 gi|145209693|gb|ABP39100.1| general secretion pathway protein D [Yersinia pestis Pestoides F]
 gi|152961153|gb|ABS48614.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
           31758]
 gi|162353825|gb|ABX87773.1| general secretion pathway protein D [Yersinia pestis Angola]
 gi|165990819|gb|EDR43120.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206004|gb|EDR50484.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167050517|gb|EDR61925.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055819|gb|EDR65603.1| general secretion pathway protein D [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229679395|gb|EEO75498.1| general secretion pathway protein D [Yersinia pestis Nepal516]
 gi|229704065|gb|EEO91077.1| general secretion pathway protein D [Yersinia pestis Pestoides A]
 gi|262361038|gb|ACY57759.1| general secretion protein [Yersinia pestis D106004]
 gi|262364982|gb|ACY61539.1| general secretion protein [Yersinia pestis D182038]
 gi|270335911|gb|EFA46688.1| general secretion pathway protein D [Yersinia pestis KIM D27]
 gi|294353462|gb|ADE63803.1| general secretion protein [Yersinia pestis Z176003]
 gi|320014111|gb|ADV97682.1| general secretion pathway protein D [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 640

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 18/190 (9%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
           +++ +L AL   T    LA P++  +    A F  G Q +   +S+ T  T     S++ 
Sbjct: 409 NWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNVG-QEVPVLISTQTTTTDKVYNSISR 467

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366
              GV+L   P +     + L I+ EVS       VN  ++ S +  R  +  V + SG 
Sbjct: 468 QSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVFNKRVVNNAVLVKSGE 527

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T+V+ GLL      +   +P L  +P++G LFR ++   E++ + +      +KP  +R+
Sbjct: 528 TVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLIL-----FIKPTILRE 582

Query: 427 LSRPDDHYSV 436
                D YSV
Sbjct: 583 ----SDDYSV 588


>gi|91774432|ref|YP_544188.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91708419|gb|ABE48347.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 539

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 33/193 (17%)

Query: 270 RTLAEPTLTAISGQSA---------SFTSGGQHLYKTVSSSTGATSVTTHD----YGVVL 316
           + L+ P L  ++ Q+A          FT   Q    TV  S    +VTT       GVV+
Sbjct: 333 KVLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGTVQGSANLQAVTTTPNTVPVGVVM 392

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN-------------AGDMPSYRVRKADTTVELP 363
             TP +   G + + ++  +S  +  V+                +P  +VR+ ++ +++ 
Sbjct: 393 SVTPQINDSGLVNINVRPTISRVLGYVDDPNPQLAAVTPPIVSRIPQIQVRELESMLQIN 452

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFIAATPFLVKPV 422
           SG T VL GL++D+IQQ  + +P ++K+P++G LF   S FN  +TE+ I      ++P+
Sbjct: 453 SGNTAVLGGLMQDNIQQATDKVPGIAKVPLVGKLFTARSNFN-VKTELVI-----FLRPI 506

Query: 423 AMRDLSRPDDHYS 435
            +R+ S   D  +
Sbjct: 507 VIRNASLESDELA 519


>gi|302184967|ref|ZP_07261640.1| general secretion pathway protein D [Pseudomonas syringae pv.
           syringae 642]
          Length = 775

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHD 311
           + +  L ALE     + L+ P+L  ++ Q A    G        S +T     T++++ +
Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVE 630

Query: 312 Y---GVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVN-AGDMPSYRVRKADTTVELPSG 365
           Y   GV+L   P +   G + + IQ +VS  +   G N A   P    R   T V   SG
Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTTSGTNDANGNPRISTRSVATQVAAQSG 690

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++
Sbjct: 691 QTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI 744


>gi|332163311|ref|YP_004299888.1| putative outer membrane porin HofQ [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667541|gb|ADZ44185.1| putative outer membrane porin HofQ [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861918|emb|CBX72088.1| protein transport protein hofQ [Yersinia enterocolitica W22703]
          Length = 439

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           I  +A P L     Q+AS   G    Y       GAT++   +  + +  TP +L  G+I
Sbjct: 285 IDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFKEAVLGMEVTPKILRNGKI 344

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            L ++   + P + +  GD  +  + K +  T + +  G TIVL G+ +         +P
Sbjct: 345 TLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETIVLGGIFQQKSSHGLNKVP 404

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +L+ IP LG LF+     +   E+ I  TP L+
Sbjct: 405 ILADIPWLGGLFKQDARQQSRRELVIFITPRLI 437


>gi|189348900|ref|YP_001944528.1| general secretion pathway protein D [Burkholderia multivorans ATCC
           17616]
 gi|189332922|dbj|BAG41992.1| general secretion pathway protein D [Burkholderia multivorans ATCC
           17616]
          Length = 768

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 19/163 (11%)

Query: 295 YKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPS 350
           Y  ++S T + +  T+D    G+ LH  P +   G + L++ TE S       N+   PS
Sbjct: 537 YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNSQTGPS 596

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R   +T+   +G  IVL GL++D        +PLL  IP +G LFR+    R++T +
Sbjct: 597 FTKRSIQSTILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNL 656

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
            +      ++PV + D           D A+A   NR + I G
Sbjct: 657 MV-----FLRPVIIAD----------RDTAQAVTSNRYDYIQG 684


>gi|167571805|ref|ZP_02364679.1| general secretion pathway protein D [Burkholderia oklahomensis
           C6786]
          Length = 743

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+L  FS  +  + L     + TL       + GQ+    +G    Y  ++S     +  
Sbjct: 482 GLLQYFSGVSDANVLSTPNLV-TLDNEEAKIVVGQNVPIPTGS---YSNLTSGNTNNAFN 537

Query: 309 THD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
           T+D    G+ LH  P +   G + L++ TE S  V G + +   P++  R   +TV   +
Sbjct: 538 TYDRRDVGLTLHVKPQITDGGILKLQLYTEDSSVVNGTLTSQTGPTFNKRSIQSTVLADN 597

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  IVL GL++D+ Q     +PLL  IP +G LFR+    R +T + +      ++PV +
Sbjct: 598 GEIIVLGGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRTKTNLMV-----FLRPVII 652

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
            D           + A+A   NR + I G
Sbjct: 653 GD----------RETAQAVTSNRYDYIQG 671


>gi|51597379|ref|YP_071570.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
           32953]
 gi|186896487|ref|YP_001873599.1| general secretion pathway protein D [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590661|emb|CAH22303.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
           32953]
 gi|186699513|gb|ACC90142.1| general secretion pathway protein D [Yersinia pseudotuberculosis
           PB1/+]
          Length = 640

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 18/190 (9%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
           +++ +L AL   T    LA P++  +    A F  G Q +   +S+ T  T     S++ 
Sbjct: 409 NWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNVG-QEVPVLISTQTTTTDKVYNSISR 467

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366
              GV+L   P +     + L I+ EVS       VN  ++ S +  R  +  V + SG 
Sbjct: 468 QSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVFNKRVVNNAVLVKSGE 527

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T+V+ GLL      +   +P L  +P++G LFR ++   E++ + +      +KP  +R+
Sbjct: 528 TVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLIL-----FIKPTILRE 582

Query: 427 LSRPDDHYSV 436
                D YSV
Sbjct: 583 ----SDDYSV 588


>gi|167560915|ref|ZP_02353831.1| general secretion pathway protein D [Burkholderia oklahomensis
           EO147]
          Length = 743

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G+L  FS  +  + L     + TL       + GQ+    +G    Y  ++S     +  
Sbjct: 482 GLLQYFSGVSDANVLSTPNLV-TLDNEEAKIVVGQNVPIPTGS---YSNLTSGNTNNAFN 537

Query: 309 THD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
           T+D    G+ LH  P +   G + L++ TE S  V G + +   P++  R   +TV   +
Sbjct: 538 TYDRRDVGLTLHVKPQITDGGILKLQLYTEDSSVVNGTLTSQTGPTFNKRSIQSTVLADN 597

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  IVL GL++D+ Q     +PLL  IP +G LFR+    R +T + +      ++PV +
Sbjct: 598 GEIIVLGGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRTKTNLMV-----FLRPVII 652

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
            D           + A+A   NR + I G
Sbjct: 653 GD----------RETAQAVTSNRYDYIQG 671


>gi|113869383|ref|YP_727872.1| pili assembly protein PilQ [Ralstonia eutropha H16]
 gi|113528159|emb|CAJ94504.1| pili assembly protein PilQ [Ralstonia eutropha H16]
          Length = 706

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +   +   A    G +  Y+  +SS GATSV      + L  T
Sbjct: 543 LSALEADGKGKIISSPRVVTANNIKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVT 601

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++  +G+      +   +   T V + +GGT+V+ G+      
Sbjct: 602 PQITPEGNVLLDV--DVNKDSVGIQTTSGFAIDTKHVQTQVLVENGGTVVIGGIYTQTES 659

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKPVAMR 425
              + +PLL  IP+LG LF+N+   R  TE+ +  TP  L + V++R
Sbjct: 660 NETDKVPLLGDIPVLGYLFKNNAKVRNRTELLVFLTPRILNESVSLR 706


>gi|54307500|ref|YP_128520.1| putative fimbrial assembly protein [Photobacterium profundum SS9]
 gi|46911920|emb|CAG18718.1| putative fimbrial assembly protein [Photobacterium profundum SS9]
          Length = 567

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 7/164 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q+A    G +  Y   SSS GA SV      + L  T
Sbjct: 405 LSALQSESKAEIISSPRLVTTNKQTAYIEQGTEIPYLEASSS-GAVSVAFKKAVLSLMVT 463

Query: 320 PTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           P +    ++ L +     EP    V G+  G+  S   ++  T V + +G TIVL G+ +
Sbjct: 464 PQITPDNKLVLDLVVTQDEPGKTVVTGI--GEAVSINTQRIGTQVLVENGETIVLGGIYQ 521

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             + +    +PLL  +P LGALFR+S     + E+ I  TP +V
Sbjct: 522 HQVNKSVTKVPLLGDLPYLGALFRHSLEEMGKRELLIFITPKIV 565


>gi|150260167|ref|ZP_01916895.1| general secretion pathway protein D [Yersinia pestis CA88-4125]
 gi|165925049|ref|ZP_02220881.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937283|ref|ZP_02225847.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|167419065|ref|ZP_02310818.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167466632|ref|ZP_02331336.1| general secretion pathway protein D [Yersinia pestis FV-1]
 gi|218927995|ref|YP_002345870.1| general secretion pathway protein D [Yersinia pestis CO92]
 gi|229840719|ref|ZP_04460878.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842725|ref|ZP_04462879.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|115346606|emb|CAL19488.1| general secretion pathway protein D [Yersinia pestis CO92]
 gi|149289575|gb|EDM39652.1| general secretion pathway protein D [Yersinia pestis CA88-4125]
 gi|165914757|gb|EDR33370.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923249|gb|EDR40400.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166963059|gb|EDR59080.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|229690205|gb|EEO82260.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697085|gb|EEO87132.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. PEXU2]
          Length = 640

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 18/190 (9%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
           +++ +L AL   T    LA P++  +    A F  G Q +   +S+ T  T     S++ 
Sbjct: 409 NWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNVG-QEVPVLISTQTTTTDKVYNSISR 467

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366
              GV+L   P +     + L I+ EVS       VN  ++ S +  R  +  V + SG 
Sbjct: 468 QSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVFNKRVVNNAVLVKSGE 527

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T+V+ GLL      +   +P L  +P++G LFR ++   E++ + +      +KP  +R+
Sbjct: 528 TVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLIL-----FIKPTILRE 582

Query: 427 LSRPDDHYSV 436
                D YSV
Sbjct: 583 ----SDDYSV 588


>gi|260912709|ref|ZP_05919195.1| type IV pilus secretin PilQ [Pasteurella dagmatis ATCC 43325]
 gi|260633087|gb|EEX51252.1| type IV pilus secretin PilQ [Pasteurella dagmatis ATCC 43325]
          Length = 431

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 109/262 (41%), Gaps = 22/262 (8%)

Query: 181 SKKVMNLLNIAGE-----DQVTLKVTIAEVRRDILKQIG----------FQHSITGSS-- 223
           S+ V N+  +  E     +Q+ ++  I  +  + LK++G            H + GS   
Sbjct: 167 SQSVRNIKKLVAEMDKPIEQIAIEARIVTISDESLKELGVRWGLLNPTELSHRVAGSLDA 226

Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
              S  S+    +F       G        ++    +  L ALER   +  +A P L   
Sbjct: 227 NGFSQISEQLNVNFATSITPAGSLALQLAKINGRLLDLELTALERENNVEIIASPRLLTT 286

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP- 339
           + +SAS   G +  Y   S      SV   +  + L  TP +    +I L +    + P 
Sbjct: 287 NKKSASIKQGTEIPYVVTSGKNETQSVEFREAVLGLDVTPHISKDNQILLDLVVSQNSPG 346

Query: 340 -VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             +   +G++ S   ++ +T V    G TIVL G+  D + +  + +P+L  IP++  LF
Sbjct: 347 ARVAYGSGEIVSIDKQEINTQVVAKDGETIVLGGVFHDSMTKGVDKVPVLGDIPMIKHLF 406

Query: 399 RNSRFNREETEIFIAATPFLVK 420
           R      ++ E+ I  TP ++K
Sbjct: 407 RKQNERHQKRELVIFVTPRILK 428


>gi|119470430|ref|ZP_01613158.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonadales bacterium TW-7]
 gi|119446355|gb|EAW27631.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonadales bacterium TW-7]
          Length = 697

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 5/160 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE       +A P + A + Q A    G +  Y T S+S+GAT+V+     + L  T
Sbjct: 535 LSALEEENKGEIIASPRIIAANQQKARIEQGTEIPY-TESASSGATTVSFKKAVLSLEVT 593

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    ++   L I  +    V+    G+  S   ++  T V + +G TIVL G+ +  
Sbjct: 594 PHITPDNKVILDLIITQDTRGDVVQTGTGEAVSIDTQEIQTQVLVENGQTIVLGGIFQQQ 653

Query: 378 IQQLKEGIPLLSKIPILGALFRN-SRFNREETEIFIAATP 416
           I      +P+L  IP +G LF++ S FN E+ E+ I  TP
Sbjct: 654 IINTTNKVPVLGDIPYVGRLFKSTSEFN-EKRELLIFVTP 692


>gi|2853000|gb|AAC38777.1| XqhA [Pseudomonas aeruginosa]
          Length = 713

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 26/252 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242
           Q+ ++  I E+  +I   +G Q ++          FA D G            GK  +E 
Sbjct: 352 QLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFA-DSGLSIGTLLGALQAGKPPAEL 410

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G    ++T S +T
Sbjct: 411 PDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 469

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351
            A       T+V   D GV L  TP +     + L I+ E+S       +   A D+ + 
Sbjct: 470 SASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVTN 529

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   +TV    G  IVL GL++DD+Q+    +PLL  IP +G LFR+SR  R +  + 
Sbjct: 530 K-RSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588

Query: 412 IAATPFLVKPVA 423
           +   P +V+  A
Sbjct: 589 VFLRPSIVRDAA 600


>gi|291613156|ref|YP_003523313.1| pilus (MSHA type) biogenesis protein MshL [Sideroxydans
           lithotrophicus ES-1]
 gi|291583268|gb|ADE10926.1| pilus (MSHA type) biogenesis protein MshL [Sideroxydans
           lithotrophicus ES-1]
          Length = 614

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 94/201 (46%), Gaps = 39/201 (19%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDY---------GVVL 316
           ++ L+ P L+ ++ Q+A+       +Y T++ + G+T+   VT   +         G  +
Sbjct: 399 VKVLSSPKLSVMNNQTATLKVVDNKVYFTITVTPGSTNGTIVTPPTFSTTAVPVAVGFTM 458

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----------------------MPSYRVR 354
           + TP +     + + ++  ++  +  VN  +                      +P  R R
Sbjct: 459 NVTPEINDSDYVTINVRPTITRIIDYVNDPNPNLANPCGTGVTSCAVAAIVNRVPEIRTR 518

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + ++ + + SG   VL GL++D+I    +G+PLL +IP +G+LF+N    + +TE+ I  
Sbjct: 519 EMESIIRVSSGQIAVLGGLMQDEINNQSDGVPLLDEIPGIGSLFKNRNDTKTKTELVI-- 576

Query: 415 TPFLVKPVAMRDLSRPDDHYS 435
               ++PV ++D S   D  S
Sbjct: 577 ---FLRPVIIKDASLDGDFNS 594


>gi|212633091|ref|YP_002309616.1| type II and III secretion system protein:NolW-like protein
           [Shewanella piezotolerans WP3]
 gi|212554575|gb|ACJ27029.1| Type II and III secretion system protein:NolW-like protein
           [Shewanella piezotolerans WP3]
          Length = 721

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 17/179 (9%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  ++ A+   T    LA P++T +  Q ASF  G +    T S ++         +V  
Sbjct: 443 FGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVER 502

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGT 367
            + GV L   P V     + L I+ EVS    G+N   G   ++  R+  TTV   SG  
Sbjct: 503 KEVGVKLKVVPQVNEGNAVKLTIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQI 558

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +VL GL+ +++Q+  + +P L  IPI+G LF++S   +++  + +      +KP  +RD
Sbjct: 559 VVLGGLINEEVQESVQKVPFLGDIPIIGHLFKSSSSGKKKKNLMV-----FIKPTIIRD 612


>gi|258406114|ref|YP_003198856.1| type II and III secretion system protein [Desulfohalobium retbaense
           DSM 5692]
 gi|257798341|gb|ACV69278.1| type II and III secretion system protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 499

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   +  LA P+LT +  QSAS   G +  Y+T +   G   V   D  + L   
Sbjct: 336 LQALEKEGQVNILASPSLTTMDNQSASTQHGERVPYET-TDEDGDRVVKFEDVAMGLKVH 394

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P ++    + + I     E     N    P  R ++ +T + + +G TIV++GL K  + 
Sbjct: 395 PRIIEGDLMAMDIVVTKDEVDFSQNVQGNPLIRTKETETNLLVRNGETIVISGLSKQTVS 454

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             + G+P L K+P L  LF+    + +  E  +  TP ++
Sbjct: 455 GTEHGVPGLRKVPGLSWLFKGIDKSEDMEEFMVFITPTIL 494


>gi|311693304|gb|ADP96177.1| LOW QUALITY PROTEIN: pilus (MSHA type) biogenesis protein MshL
           [marine bacterium HP15]
          Length = 570

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 108/260 (41%), Gaps = 39/260 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGKFVSE---GGD 244
           QV L+  I E+  +   Q G   S       IT S   P    A    G+ +     GG 
Sbjct: 278 QVILEAKILEIALNEGYQQGINWSDIQSASSITASDGLPEDFTAQALAGQVIQTSDIGGL 337

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------- 295
           FS    +    F  ++  L +   ++ L+ P ++ ++ Q A    G    +         
Sbjct: 338 FSAS--VRAGDFTGLIELLGKQGNVQILSSPRISTVNNQKAVIKVGTDEFFCHRYDFDDN 395

Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAG 346
                   S++ +  +T    G+ L  TP +   G I L +   VSE      VI +   
Sbjct: 396 NSAVTATDSTSTSVELTPFFSGISLDVTPQISESGVITLHVHPSVSEVTDQEKVITIGER 455

Query: 347 D----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           D    + S  VR+ D+ +   SG  +V+ GL+++  +     +P  S+IP++G LF+  R
Sbjct: 456 DVTLPLASSTVRETDSVIRAESGQIVVIGGLIQNSSEDNNSAVPFFSEIPLVGELFKQRR 515

Query: 403 FNREETEIFIAATPFLVKPV 422
           F   ++E+ I     L++PV
Sbjct: 516 FQSRKSELVI-----LLRPV 530


>gi|318607800|emb|CBY29298.1| type IV pilus biogenesis protein PilQ [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 416

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           I  +A P L     Q+AS   G    Y       GAT++   +  + +  TP +L  G+I
Sbjct: 262 IDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFKEAVLGMEVTPKILRNGKI 321

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            L ++   + P + +  GD  +  + K +  T + +  G TIVL G+ +         +P
Sbjct: 322 TLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETIVLGGIFQQKSSHGLNKVP 381

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +L+ IP LG LF+     +   E+ I  TP L+
Sbjct: 382 ILADIPWLGGLFKQDARQQSRRELVIFITPRLI 414


>gi|254240262|ref|ZP_04933584.1| secretion protein XqhA [Pseudomonas aeruginosa 2192]
 gi|126193640|gb|EAZ57703.1| secretion protein XqhA [Pseudomonas aeruginosa 2192]
          Length = 776

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 26/252 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242
           Q+ ++  I E+  +I   +G Q ++          FA D G            GK  +E 
Sbjct: 352 QLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFA-DSGLSIGTLLGALQAGKPPAEL 410

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G    ++T S +T
Sbjct: 411 PDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 469

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351
            A       T+V   D GV L  TP +     + L I+ E+S       +   A D+ + 
Sbjct: 470 SASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVTN 529

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   +TV    G  IVL GL++DD+Q+    +PLL  IP +G LFR+SR  R +  + 
Sbjct: 530 K-RSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588

Query: 412 IAATPFLVKPVA 423
           +   P +V+  A
Sbjct: 589 VFLRPSIVRDAA 600


>gi|332851464|ref|ZP_08433461.1| general secretion pathway protein D [Acinetobacter baumannii
           6013150]
 gi|332866854|ref|ZP_08437241.1| general secretion pathway protein D [Acinetobacter baumannii
           6013113]
 gi|332729917|gb|EGJ61248.1| general secretion pathway protein D [Acinetobacter baumannii
           6013150]
 gi|332734382|gb|EGJ65503.1| general secretion pathway protein D [Acinetobacter baumannii
           6013113]
          Length = 758

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 109/262 (41%), Gaps = 43/262 (16%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------KSFAADF--------- 234
           QV ++  I EV  D   Q+G Q ++   SSG              S AA +         
Sbjct: 394 QVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGSAGAA 453

Query: 235 ---------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                    G     E G+F       R ++  ++ AL+  T    L+ P++  +  + A
Sbjct: 454 SAIANGANKGNGATLELGNFDNS----RKAYGALIQALKTNTKSNLLSTPSIVTMDNEEA 509

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVS-- 337
               G    + T S +T +T +  +      D GV L   P +   G + L ++ EVS  
Sbjct: 510 YIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRLEVEQEVSAV 569

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           +   G  A D+ + + R   T V    G T+VL GL+ DD    ++GIP LS IP +G L
Sbjct: 570 QDSRG-QAADLVTSK-RAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRL 627

Query: 398 FRNSRFNREETEIFIAATPFLV 419
           FR+   +  +  + +   P +V
Sbjct: 628 FRSDNRSNVKRNLLVFIHPTIV 649


>gi|257454588|ref|ZP_05619844.1| general secretion pathway protein D [Enhydrobacter aerosaccus SK60]
 gi|257447898|gb|EEV22885.1| general secretion pathway protein D [Enhydrobacter aerosaccus SK60]
          Length = 813

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 34/259 (13%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------- 245
           DQV ++  I E+  +  +Q+G Q ++  ++SG       + G   V    +         
Sbjct: 408 DQVLIQAAIMEISGNDTQQLGVQWAMGNANSGVGVINFNNIGASAVGLASEILSKTPGTA 467

Query: 246 --SVKGVL------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG- 290
             SV G L            +R  +  +L A+ +      L+ P++  +  + A+   G 
Sbjct: 468 AASVAGALLGIGTSKTDSNGNREFYGAILQAINKTNNANLLSMPSILTLDNEKANILVGQ 527

Query: 291 ------GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-V 343
                 G +   + SS+T   +V+  D G+ L+  P +   G + L I  EVS  V G +
Sbjct: 528 NVPFVTGSYTTASNSSTTPFQTVSRQDVGINLNVIPHIGDNGSVRLEISQEVSSIVDGTL 587

Query: 344 N--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           N  +G + +  + K  TT+      T+ L GL++D+    ++ +P L   PILG LFR+ 
Sbjct: 588 NNVSGVVTNKNLIK--TTILADDQQTVALGGLMRDNSTYGQQKVPGLGDAPILGNLFRSK 645

Query: 402 RFNREETEIFIAATPFLVK 420
             N ++T + +   P +++
Sbjct: 646 SKNSDKTNLIVFLQPTILR 664


>gi|311693369|gb|ADP96242.1| type 4 fimbrial biogenesis protein PilQ [marine bacterium HP15]
          Length = 688

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 3/181 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F++    D F  +  L ALE       +++P +     Q+AS  SG +  Y+  +SS GA
Sbjct: 511 FAIGWGSDNFLVDLELSALESDGQAEVVSQPRVVTADRQTASIKSGEEIPYQEATSS-GA 569

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           T++   +  + L  TP +    +I + +   V++   G     +PS       T V + +
Sbjct: 570 TNIEFKEAVLSLEVTPQITPDDKIIMDLV--VNQDSRGEVTAGIPSINTNSVTTQVLVGN 627

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T+VL G+ + ++       P L  IP LG +F+ +    E +E+ I  TP ++K   +
Sbjct: 628 GETVVLGGIFQSEVATQTTKTPFLGDIPYLGRIFKRTEHLDERSELLIFITPKIIKNDLL 687

Query: 425 R 425
           R
Sbjct: 688 R 688


>gi|239814151|ref|YP_002943061.1| type IV pilus secretin PilQ [Variovorax paradoxus S110]
 gi|239800728|gb|ACS17795.1| type IV pilus secretin PilQ [Variovorax paradoxus S110]
          Length = 714

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 2/137 (1%)

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           Q+ +    G+ +    ++S+GATS++     + L  TP +   G I L +  +VS+   G
Sbjct: 573 QTKALIEQGEEIPYQQATSSGATSISFRKAVLKLEVTPQITPEGNIILTL--DVSKDARG 630

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           VN    P+   +   T V + +GGT+V+ G+ +      +  +P+L ++P LGALFR   
Sbjct: 631 VNTSAGPAINTKHVQTEVLVENGGTVVIGGIFELTETNDESRVPVLGEVPYLGALFRKRE 690

Query: 403 FNREETEIFIAATPFLV 419
               +TE+ +  TP ++
Sbjct: 691 RVANKTEMLVFITPKMI 707


>gi|291327009|ref|ZP_06126658.2| competence protein E [Providencia rettgeri DSM 1131]
 gi|291312226|gb|EFE52679.1| competence protein E [Providencia rettgeri DSM 1131]
          Length = 358

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 4/166 (2%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            E  L ALE+   +  +A P L A   Q AS   G +  Y  V+S+   T V   D  + 
Sbjct: 193 LEMKLKALEKENLLSIIASPRLVASHQQPASIQQGTEIPY--VTSNDKKTHVQFKDAVLG 250

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGL 373
           +  TP+++   +I L ++   + P   + +       + K +  T V + +  T++L G+
Sbjct: 251 MDVTPSIVRDEKIELNLKISHNSPDTALTSSQHHHLAINKQEIATNVTIKNNETLILGGI 310

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +   ++ + G+P LS IP LG LF N+  + ++  + +  TP L+
Sbjct: 311 FQQKQEKTEMGLPFLSHIPFLGTLFTNTAEHTDKRVLIVFITPKLI 356


>gi|88861010|ref|ZP_01135645.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas tunicata D2]
 gi|88816938|gb|EAR26758.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas tunicata D2]
          Length = 659

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 3/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+      +A P +T  + + A    G +  Y   +SS GAT+V      + L  T
Sbjct: 497 LSALEQENKAEIIASPRITTANQKKARIEQGTEIPYVQAASS-GATTVEFKKAVLSLEVT 555

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    ++ L +      P   +    G+  +   ++  T V + +G TIVL G+ +  
Sbjct: 556 PHITPDNKVILDLVITQDTPGDTVQTPTGNAVAINTQEIRTQVLVENGQTIVLGGIYQQQ 615

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +      +PLL  IP LGALF+ +    E+ E+ I  TP ++K
Sbjct: 616 VINSSSKVPLLGDIPYLGALFKRTSEKTEKKELLIFVTPKILK 658


>gi|238792887|ref|ZP_04636517.1| Protein transporter HofQ [Yersinia intermedia ATCC 29909]
 gi|238727741|gb|EEQ19265.1| Protein transporter HofQ [Yersinia intermedia ATCC 29909]
          Length = 406

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 2/150 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G    Y       G  ++   +  + +  TP +L  G+I L 
Sbjct: 255 IASPRLVTSHQQTASIKQGSDIPYTVSRGKKGGPTIEFKEAVLGMEVTPKILRNGKITLN 314

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P + +  GD  +  + K +  T + +  G TIVL G+ +    Q    +P+L+
Sbjct: 315 LKISQNMPGMAIKRGDSEALLIDKQEIKTQITVNDGETIVLGGIFQQKNSQGVNKVPILA 374

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP LGALF+     +   E+ I  TP L+
Sbjct: 375 DIPWLGALFKQDTQQQSRRELVIFITPRLI 404


>gi|283852780|ref|ZP_06370044.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
 gi|283571861|gb|EFC19857.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
          Length = 634

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 90/198 (45%), Gaps = 30/198 (15%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            E  L AL     I+ L+ PT+T +   SA   +G    Y  VS+S   T+V      + 
Sbjct: 444 LEAQLTALAEENKIKILSSPTITTMENLSAFVENGKDIPY--VSTSQNGTNVQFAHATLK 501

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVL 370
           L   P V+      LR++  V +  +  N G+      P Y+ R+  + + +  G TIV+
Sbjct: 502 LEMLPHVVDGSN--LRMKIVVKDDQVDPNQGNWVQGNPPIYK-RETQSNLVVEDGDTIVI 558

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLVK-------- 420
           +GL +D +     G+P L  IP LG  F  ++S  +REE  IFI  TP +++        
Sbjct: 559 SGLTRDTVTDANSGVPFLRDIPGLGWAFKAKSSDIHREEMLIFI--TPVILQEKPVAPVP 616

Query: 421 --------PVAMRDLSRP 430
                   PVAM   SRP
Sbjct: 617 PVAGVIEPPVAMAAASRP 634


>gi|113869481|ref|YP_727970.1| general secretion pathway protein D [Ralstonia eutropha H16]
 gi|113528257|emb|CAJ94602.1| general secretion pathway protein D [Ralstonia eutropha H16]
          Length = 812

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 11/199 (5%)

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            V + G  ++  V        +L AL    ++  L+ P L  +  + A    G Q++  T
Sbjct: 510 LVQDIGGLNLGIVNKAMGLGALLRALGSNGSVNLLSTPNLITLENEEAKILIG-QNIPIT 568

Query: 298 VSS---STGATSVTT------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGD 347
             S   + GA SVT        D G+ L   P +   G + ++I  E S  V    N   
Sbjct: 569 TGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQESSNVVQATANLIQ 628

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+  VR  +T V +  G  IVL GL++D      + +PLL  IP +G LFR    NR +
Sbjct: 629 GPTTNVRSIETNVLVDDGQIIVLGGLIEDSYGDGVQKVPLLGDIPWIGGLFRYENKNRAK 688

Query: 408 TEIFIAATPFLVKPVAMRD 426
           T + +   P++++     D
Sbjct: 689 TNLLVFLRPYVMRTAGAAD 707


>gi|121999034|ref|YP_001003821.1| type II and III secretion system protein [Halorhodospira halophila
           SL1]
 gi|121590439|gb|ABM63019.1| type II and III secretion system protein [Halorhodospira halophila
           SL1]
          Length = 372

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 4/183 (2%)

Query: 239 VSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           V EG   SV  G +     +  L A+E     R ++ P +     Q+A    G Q  Y+ 
Sbjct: 164 VGEGARLSVSVGEVGERLLQLELSAMEAEGHGRVVSSPRVLTTERQAARIEQGVQIPYQE 223

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            + S GAT+V   D  + L  TP V     + L ++  V++  +G     +PS   +   
Sbjct: 224 TAES-GATAVAFQDAALSLTATPQVTEDDAVSLALR--VTKDAVGQIYEGVPSIDTQAVT 280

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T + + +G TIVL G+ + + ++ ++ +P L ++P++G LFR     +   E+ +  TP 
Sbjct: 281 THLRVQAGETIVLGGVREHEQRKQRQRVPWLGELPLIGWLFRQRMSEQSHHELLVFVTPR 340

Query: 418 LVK 420
           LV+
Sbjct: 341 LVE 343


>gi|330815003|ref|YP_004358708.1| General secretory pathway protein D [Burkholderia gladioli BSR3]
 gi|327367396|gb|AEA58752.1| General secretory pathway protein D [Burkholderia gladioli BSR3]
          Length = 787

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 42/216 (19%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTT--- 309
           +L A   +     L+ P L  +  + A    G Q++      Y  ++S + + +  T   
Sbjct: 496 LLQAFSGSNDANILSTPNLVTLDNEEARIVVG-QNVPIATGSYANLTSGSNSNAFNTFDR 554

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------------IGVNAGDMPSYRVRKAD 357
            D G+ LH  P +   G + L+I TE S  V            +GV     P++  R   
Sbjct: 555 QDVGLTLHVKPQITEGGILKLQIYTEDSSVVPSATSSGSSSSQVGV-----PTFNKRSIQ 609

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           +TV   +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R +T + +     
Sbjct: 610 STVLCDNGEIIVLGGLMQDNYQVGNNKVPLLGDIPWIGQLFRSEAKQRSKTNLMV----- 664

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
            ++PV + D          E   +A   NR + I G
Sbjct: 665 FLRPVILSD----------EATTQAVTANRYDYIQG 690


>gi|262393141|ref|YP_003284995.1| MSHA biogenesis protein MshL [Vibrio sp. Ex25]
 gi|262336735|gb|ACY50530.1| MSHA biogenesis protein MshL [Vibrio sp. Ex25]
          Length = 530

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 108/254 (42%), Gaps = 31/254 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------GGDFS 246
           QV L+  I EV  +   Q G   S   +S G S S   +     +          GG  +
Sbjct: 255 QVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSVVVNRPASALPPLDAIGTLLGGQTN 314

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG-- 303
           V   +   +F  VL  +     +  L+ P +TA + Q +    G    + T +SS+ G  
Sbjct: 315 V--TISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNG 372

Query: 304 -------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------D 347
                     +T    G+ L  TP + + G + L +     EVSE V  +N G       
Sbjct: 373 ENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVSEEVKKLNLGGEFQNIQ 432

Query: 348 MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           +P  +  +R++D+ +    G  +V+ GL+K   ++L   +P L  +P LG LFRN     
Sbjct: 433 LPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVT 492

Query: 406 EETEIFIAATPFLV 419
           E+TE+ I   P +V
Sbjct: 493 EKTELVILLKPTVV 506


>gi|197335785|ref|YP_002155116.1| general secretion pathway protein D [Vibrio fischeri MJ11]
 gi|197317275|gb|ACH66722.1| general secretion pathway protein D [Vibrio fischeri MJ11]
          Length = 548

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 21/186 (11%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA--------- 304
           +F+ VL  ++    +  L+ P +TA + Q A    G    Y T VSS TG+         
Sbjct: 340 NFQAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGRDEYYVTEVSSVTGSGDNSNASPE 399

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD--------MPSYRV 353
            ++T    G+ L  TP +   G + L +     +V   V  ++ GD        +    +
Sbjct: 400 VTLTPFFSGISLDVTPQIDDKGNVMLHVHPSVIDVENEVKEIDLGDVGGVLKLPLAKSSI 459

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R++D+ +   SG  +V+ GL+K         +PLL  +P LG LFRN     ++TE+ I 
Sbjct: 460 RESDSVIRAKSGDVVVIGGLMKSQTVDQVSKVPLLGDVPALGHLFRNVSQLTQKTELVIL 519

Query: 414 ATPFLV 419
             P +V
Sbjct: 520 LKPTVV 525


>gi|197104120|ref|YP_002129497.1| type II secretory pathway protein D [Phenylobacterium zucineum
           HLK1]
 gi|196477540|gb|ACG77068.1| type II secretory pathway protein D [Phenylobacterium zucineum
           HLK1]
          Length = 686

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 11/188 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  V++A++  TA   L+ P++  +  Q A+   G Q +  T   S GA       ++  
Sbjct: 462 FGLVINAVKSDTASNLLSTPSVMTLDNQPATILVG-QEVPITTGESLGANNENPFRTIAR 520

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGT 367
            + GV L  TP + + G I L ++ EVS  V G  + +     +  R+ +TTV +  G  
Sbjct: 521 QNVGVQLEVTPQINAGGTITLFLRQEVSA-VAGPISANFTELVLNKREIETTVNVDDGEI 579

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRD 426
           IVL GLL  D +   E  P+L  IP LGALFR +   + +T + +   P +V   A  R 
Sbjct: 580 IVLGGLLSQDERASVEKTPVLGDIPGLGALFRGTNKAKTKTNLMVFIRPKIVGDAAGARA 639

Query: 427 LSRPDDHY 434
           ++ P   Y
Sbjct: 640 VTGPKYEY 647


>gi|59710966|ref|YP_203742.1| MSHA biogenesis protein MshL [Vibrio fischeri ES114]
 gi|59479067|gb|AAW84854.1| MSHA biogenesis protein MshL [Vibrio fischeri ES114]
          Length = 546

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 21/186 (11%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA--------- 304
           +F+ VL  ++    +  L+ P +TA + Q A    G    Y T VSS TG+         
Sbjct: 338 NFQAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGRDEYYVTEVSSVTGSGDNSNASPE 397

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD--------MPSYRV 353
            ++T    G+ L  TP +   G + L +     +V   V  ++ GD        +    +
Sbjct: 398 VTLTPFFSGISLDVTPQIDDKGNVMLHVHPSVIDVENEVKEIDLGDVGGVLKLPLAKSSI 457

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R++D+ +   SG  +V+ GL+K         +PLL  +P LG LFRN     ++TE+ I 
Sbjct: 458 RESDSVIRAKSGDVVVIGGLMKSQTVDQVSKVPLLGDVPALGHLFRNVSQLTQKTELVIL 517

Query: 414 ATPFLV 419
             P +V
Sbjct: 518 LKPTVV 523


>gi|330831366|ref|YP_004394318.1| MSHA biogenesis protein MshL [Aeromonas veronii B565]
 gi|328806502|gb|AEB51701.1| MSHA biogenesis protein MshL [Aeromonas veronii B565]
          Length = 557

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 35/230 (15%)

Query: 224 SGPSKSFAADFGGK-FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           S P++ F+A  GG  F    G+F+V            ++ L+    + TL+ P +TA + 
Sbjct: 326 STPNQIFSALGGGAGFKISDGNFNV-----------AVNLLKTQGDVNTLSSPRVTATNN 374

Query: 283 QSASFTSGGQHLY-----------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           Q A    G    Y            T +  T    +T    G+ L  TP +   G++ L 
Sbjct: 375 QKAVIKVGTDEYYVTNASTTITTTSTGTDKTPNVELTPFFSGIALDVTPQIDEEGKVLLH 434

Query: 332 IQ-----TEVSEPVI--GVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           I      TE    VI  G + G +        +R++DT V+  +G  IV+ GL+K D Q+
Sbjct: 435 IHPSVIDTEEQNKVIDMGTSGGKLQLPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQE 494

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSR 429
           +   +PLL  IP +G  F N R + ++ E+ I   P +V K     +L R
Sbjct: 495 IVSKVPLLGDIPWVGEAFTNRRESTKKVELVIMLKPTVVEKDTWQNELQR 544


>gi|304310058|ref|YP_003809656.1| General secretion pathway D protein, outer membrane secretin [gamma
           proteobacterium HdN1]
 gi|301795791|emb|CBL43990.1| General secretion pathway D protein, outer membrane secretin [gamma
           proteobacterium HdN1]
          Length = 721

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 22/195 (11%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGGQH 293
           GG  +  G +D   F  +L A+  A+    L+ P++  +         GQ+  F +G Q 
Sbjct: 482 GGHRNSAGKVD---FGLILQAVNTASNTNVLSTPSIMTLDNEEAEILVGQNVPFITGNQL 538

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSY 351
            Y   S +    +V   D G+ L   P V +   I LR+  E S       V   D+ + 
Sbjct: 539 SY---SGTNPFQTVERKDVGLNLKVIPQVNAGDTISLRVTQEASSIADSSNVKTTDVITN 595

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R  +TT+    G  IVL GL++D +    + +PLL  IP++GALFR++   +E+  + 
Sbjct: 596 K-RLINTTILASDGQVIVLGGLMEDTLSDAVQKVPLLGDIPLIGALFRSTSKVQEKRNLL 654

Query: 412 IAATPFLVKPVAMRD 426
           +      ++P  +RD
Sbjct: 655 L-----FLRPTVIRD 664


>gi|322418906|ref|YP_004198129.1| type IV pilus secretin PilQ [Geobacter sp. M18]
 gi|320125293|gb|ADW12853.1| type IV pilus secretin PilQ [Geobacter sp. M18]
          Length = 922

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 22/244 (9%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGD-- 244
           A E QV ++  I E      + +G Q +++   S  S     S    FGG  VS  G   
Sbjct: 685 APEKQVMIEARIVEATSTFTRDLGVQWALSYKDSSASIANINSAETTFGG-VVSTAGPGT 743

Query: 245 ---------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                     S   +      +  + A      ++ ++ P +  ++ ++A  + G    Y
Sbjct: 744 SGSGGLGLGMSFGKLTSNVQLDMRIAAAATIGQVKIISTPKVVTLNNKAAKISQGQSIPY 803

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           +T S+    T     +  + L  TP + + G + ++I+   + P      G  P    ++
Sbjct: 804 QTTSAEGTKTEFV--EAALTLEVTPHITADGSVSMKIKASNNSP----GTGTPPPINKKE 857

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A T + + +G T V+ G+  D   +   G+P L+ IP+LG LF+++   + +TE+ I  T
Sbjct: 858 ATTELVVSNGDTTVIGGIYVDSDTESDTGVPFLADIPLLGWLFKSNTKQKTKTELLIFIT 917

Query: 416 PFLV 419
           P +V
Sbjct: 918 PKIV 921


>gi|152991308|ref|YP_001357030.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
 gi|151423169|dbj|BAF70673.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
          Length = 495

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 111/249 (44%), Gaps = 32/249 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIG-----FQHSITGSSSGPSKSFAA----DFGGKFVSEGGDF 245
           QV ++  I EV+ +  + +G     F   +TGS S       +    +FG      G +F
Sbjct: 240 QVMIEAKIIEVQYNDDQTVGIDWSKFSLDVTGSRSAQQSRSGSTKLNNFGTPDYFIGYNF 299

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TG 303
           S++G+LD          L++   ++ L+ P +  ++ Q A    G Q  Y+  +    TG
Sbjct: 300 SMQGLLD---------FLKKYGKVKILSNPKVMTLNNQPAIINVGDQLSYRYENGVVITG 350

Query: 304 ATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDM--PSY 351
             +V    Y       G+ L+  P +     I ++I    + +    IG        P  
Sbjct: 351 GNAVANQTYSIGQTFVGISLYVIPEITENSDIIMKINPVTSALKNENIGYETNRTLPPDI 410

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           R+++  + V++  G  I++ GL+  +  +    +P+L  IPI+G  F++   + +++E+F
Sbjct: 411 RLKQVTSIVKVKDGQKILIGGLISKNYSKQFNKVPVLGDIPIIGYAFKSKNNSVKKSELF 470

Query: 412 IAATPFLVK 420
           +   P +VK
Sbjct: 471 VLIIPKIVK 479


>gi|189424703|ref|YP_001951880.1| type IV pilus secretin PilQ [Geobacter lovleyi SZ]
 gi|189420962|gb|ACD95360.1| type IV pilus secretin PilQ [Geobacter lovleyi SZ]
          Length = 891

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 110/254 (43%), Gaps = 22/254 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSS-GPSKSFAADFGG- 236
           +K++  L++  E QV ++  I E      + +G    I    GS+S     S   +FGG 
Sbjct: 640 RKILASLDVP-EKQVMIEARIVEASSTFTQSLGVNWGIHYRDGSASIAGINSMDTNFGGL 698

Query: 237 --KFVSEGGDFSVKGVLDRFSFETV---------LHALERATAIRTLAEPTLTAISGQSA 285
                +  G     G     SF T+         L+A   A  +R ++ P +  ++ +SA
Sbjct: 699 ASTAPTSSGVSGSPGAAAGISFGTLSSNIKLDLRLNAAVSAGLVRIVSTPRVATLNHKSA 758

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
             T G Q  Y   +S    T     +  + L  TP +   G + ++I  +   P    + 
Sbjct: 759 KITQGQQIPYTASTSDKIETKFV--EAALALEVTPHINPNGTVVMKIDAKNDSPG---ST 813

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           G+ P+   ++A T + L  G T V+ G+  +      +G+P L+ +P LG LF+++   R
Sbjct: 814 GNPPAINKKQATTEMMLRDGETTVIGGIFVESESNNDDGVPFLADVPWLGGLFKSNETKR 873

Query: 406 EETEIFIAATPFLV 419
              E+ I  TP ++
Sbjct: 874 NRNELLIFITPRII 887


>gi|15597065|ref|NP_250559.1| secretion protein XqhA [Pseudomonas aeruginosa PAO1]
 gi|218892174|ref|YP_002441041.1| secretion protein XqhA [Pseudomonas aeruginosa LESB58]
 gi|9947858|gb|AAG05257.1|AE004613_2 secretion protein XqhA [Pseudomonas aeruginosa PAO1]
 gi|218772400|emb|CAW28182.1| secretion protein XqhA [Pseudomonas aeruginosa LESB58]
          Length = 776

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 26/252 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242
           Q+ ++  I E+  +I   +G Q ++          FA D G            GK  +E 
Sbjct: 352 QLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFA-DSGLSIGTLLGALQAGKPPAEL 410

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G    ++T S +T
Sbjct: 411 PDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 469

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351
            A       T+V   D GV L  TP +     + L I+ E+S       +   A D+ + 
Sbjct: 470 SASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVTN 529

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   +TV    G  IVL GL++DD+Q+    +PLL  IP +G LFR+SR  R +  + 
Sbjct: 530 K-RSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588

Query: 412 IAATPFLVKPVA 423
           +   P +V+  A
Sbjct: 589 VFLRPSIVRDAA 600


>gi|56476683|ref|YP_158272.1| fimbrial type-IV assembly protein PilQ [Aromatoleum aromaticum
           EbN1]
 gi|56312726|emb|CAI07371.1| fimbrial type-IV assembly protein PilQ [Aromatoleum aromaticum
           EbN1]
          Length = 721

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     R ++ P +   +   A    G +  Y   +SS GA S+      + L   
Sbjct: 556 LSALESDGRGRIVSSPRVLTANQVEAVIEQGTKIPYPEKTSS-GAASIKFEKAVLSLKVK 614

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   GR+ L +      P    +    P+   +   T V + +GGT+V+ G+ +++  
Sbjct: 615 PQITPEGRVQLFVLVNKDRPDFARSVEGTPTVVTKNIQTEVLVENGGTVVIGGIYEEEET 674

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                IPLL ++P++GALFRN+  N + +E+ I  TP +V
Sbjct: 675 DSVTRIPLLGEVPLVGALFRNTIKNSKRSELLIFITPRIV 714


>gi|254229258|ref|ZP_04922676.1| pilus (msha type) biogenesis protein mshl, putative [Vibrio sp.
           Ex25]
 gi|151938182|gb|EDN57022.1| pilus (msha type) biogenesis protein mshl, putative [Vibrio sp.
           Ex25]
          Length = 547

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 108/254 (42%), Gaps = 31/254 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------GGDFS 246
           QV L+  I EV  +   Q G   S   +S G S S   +     +          GG  +
Sbjct: 272 QVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSVVVNRPASALPPLDAIGTLLGGQTN 331

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG-- 303
           V   +   +F  VL  +     +  L+ P +TA + Q +    G    + T +SS+ G  
Sbjct: 332 V--TISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNG 389

Query: 304 -------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------D 347
                     +T    G+ L  TP + + G + L +     EVSE V  +N G       
Sbjct: 390 ENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVSEEVKKLNLGGEFQNIQ 449

Query: 348 MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           +P  +  +R++D+ +    G  +V+ GL+K   ++L   +P L  +P LG LFRN     
Sbjct: 450 LPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVT 509

Query: 406 EETEIFIAATPFLV 419
           E+TE+ I   P +V
Sbjct: 510 EKTELVILLKPTVV 523


>gi|86157073|ref|YP_463858.1| type II and III secretion system protein, secretin
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773584|gb|ABC80421.1| type II and III secretion system protein, secretin
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 882

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 7/169 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
           F+    L ALE    ++T++ P +  I  + A+   G    +   S+S    + T  +  
Sbjct: 705 FNLNLRLSALENNGVVKTISSPKIATIDNKEATIGQGISIPFSQTSAS--GVNTTFVEAK 762

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + L  TP V + G I L+I+   + P   + G N    PS   R+A+T V +  G T V+
Sbjct: 763 LELKVTPHVTADGSILLKIKATNNAPNSSLTGSNG--QPSISKREAETEVLVKDGETTVI 820

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G+           +P LSKIP+LG  FR+     + TE+ I  TP ++
Sbjct: 821 GGIYTRSTASKTAAVPFLSKIPLLGFFFRSDTNTDDHTELLIFITPRIL 869


>gi|82703023|ref|YP_412589.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
 gi|82411088|gb|ABB75197.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
          Length = 789

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 115/261 (44%), Gaps = 35/261 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAA-DF------GGKFVSEGGD-- 244
           QV ++  IAE+  D   + G Q  +++ ++ G ++ F   +F      GG  +S   +  
Sbjct: 452 QVYIEALIAEITADRAAEFGIQWQNLSNAAQGGTQVFGGTNFNAGTAGGGSIISTAQNPI 511

Query: 245 ----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                            ++ G+    +  T++ ALE       L+ PTL  ++ + A   
Sbjct: 512 ANAASGLTIGIMNGLVTAIPGIGPVLNIHTLIRALETDANANILSTPTLLTLNNEEARII 571

Query: 289 SG-------GQHLYKTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
            G       GQ +     + T    +V+  D G+ L   P +     + ++I  EVS  V
Sbjct: 572 IGQNVPIPTGQFIPPVGGAVTSPFQTVSRQDVGLSLKIKPLISEGNTVRVQIFQEVSSVV 631

Query: 341 IG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            G VNA +      R  ++TV +  G  +VL GL++D +    E IPL+  IP+ G LF 
Sbjct: 632 PGTVNATNGLITNKRSIESTVLVDDGQILVLGGLMQDSVNDSVERIPLVGAIPLFGQLFS 691

Query: 400 NSRFNREETEIFIAATPFLVK 420
            ++ +R +T + +   P L++
Sbjct: 692 YNKRSRNKTNLMVFLRPTLMR 712


>gi|238783680|ref|ZP_04627700.1| General secretion pathway protein D [Yersinia bercovieri ATCC
           43970]
 gi|238715393|gb|EEQ07385.1| General secretion pathway protein D [Yersinia bercovieri ATCC
           43970]
          Length = 661

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 9/219 (4%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
           ++  +  AL   +    LA P++  +    A F  G Q +    S+ T AT     S++ 
Sbjct: 426 NWNGLFTALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 484

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGG 366
              G++L   P +     + L I+ EVS      N         +  R  +  V + SG 
Sbjct: 485 QSVGIMLKVKPQINKGDSVLLEIRQEVSSVADSSNTNTNNLGFIFNKRAINNAVLVKSGE 544

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T+V+ GLL + + +    IPLL  IP +G LFR S+   +++ + +   P +++      
Sbjct: 545 TVVVGGLLDEKLSKTVNKIPLLGDIPFIGGLFRQSKEKVDKSNLILFIKPTILRETNDYS 604

Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
           +   D H   +D          N++Y    A+E++  +Y
Sbjct: 605 VVTIDKHTKYKDSNSQENTINNNRLYHDLLATEIKSDSY 643


>gi|330863522|emb|CBX73638.1| general secretion pathway protein D [Yersinia enterocolitica
           W22703]
          Length = 577

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 9/156 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
           +++ +  AL   +    LA P++  +    A F  G Q +    S+ T AT     S++ 
Sbjct: 416 NWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 474

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366
              GV+L   P +     + L I+ EVS       VNA ++ S +  R  +  V + SG 
Sbjct: 475 QSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSVFNKRVVNNAVLVKSGE 534

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           T+V+ GLL   I ++   +PLL  IP +G LFR S+
Sbjct: 535 TVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQSK 570


>gi|302038138|ref|YP_003798460.1| putative general secretion pathway protein D [Candidatus Nitrospira
           defluvii]
 gi|300606202|emb|CBK42535.1| putative General secretion pathway protein D [Candidatus Nitrospira
           defluvii]
          Length = 765

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 115/296 (38%), Gaps = 54/296 (18%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           I+D    VEL+E  +  + R                   + +V   V + EV R + +  
Sbjct: 292 IRDQPEKVELAEKIIQANDRE------------------DSEVLFDVEVLEVNRTVDQTY 333

Query: 214 GFQHSITGSSS----GPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATA 268
           G  +     ++    G + + A D   +F             L +      L   ++ T 
Sbjct: 334 GLSYPKQIGAALIPPGFTGAIAGDIAQQFTYRNLASLGQDSYLFKLPTNVQLDFFKQVTD 393

Query: 269 IRTLAEPTLTAISGQSASFTSG--------------GQHLYKTVSSSTGATSVTTHDYGV 314
            +TLA P +  ++ + A    G              GQ     V +++  TS+   D GV
Sbjct: 394 AKTLAAPKVRVLNNKKAEVNIGDKQPILLSTTNVLPGQAATGAVPTTSTVTSIEFRDTGV 453

Query: 315 VLHFTPTVLSPGRIGLRIQTEV-----------SEPVIGVNAGDMPSYRVRKADTTVELP 363
            L   P +     + L+++ EV           S P+     G+      R A+T + + 
Sbjct: 454 KLTVEPNIHLANELALKMKIEVIRLGDVVLLQQSPPITQFKFGN------RSAETMLNVR 507

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G TIVL GLL+++ ++ K  IP L  IP LG L  + +  R  TE+ +  TP +V
Sbjct: 508 DGETIVLGGLLQEEDRRTKVTIPWLGDIPFLGNLLSSFKTQRVTTEVILTITPHIV 563


>gi|54306408|gb|AAV33391.1| type IV pilus biogenesis secretin PilQ [Moraxella catarrhalis 7169]
 gi|326559645|gb|EGE10059.1| type IV pilus secretin PilQ [Moraxella catarrhalis 7169]
 gi|326567677|gb|EGE17783.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC1]
 gi|326568688|gb|EGE18759.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC7]
          Length = 473

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 109/249 (43%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGG------ 243
           +QV ++  I     +  +++G      G +     G S+        + V+ GG      
Sbjct: 229 EQVMIEARIVSANENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMWQEGVAAGGHQNSHL 288

Query: 244 --DFSVKGVLDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             D  V   + R +F          +  L A++       ++ P +     Q+A  +SG 
Sbjct: 289 NVDLGVDNAMGRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGL 348

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           Q  Y+  + S GA++    +  ++L  TP +   G+IGL++  +   PV  +  G + + 
Sbjct: 349 QIPYQETTHS-GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL--GHI-AI 404

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           +    +T V +  G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ 
Sbjct: 405 QEDAIETNVIIEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELL 464

Query: 412 IAATPFLVK 420
           I  TP LV+
Sbjct: 465 IFITPKLVR 473


>gi|197121096|ref|YP_002133047.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. K]
 gi|196170945|gb|ACG71918.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. K]
          Length = 887

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 7/169 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
           F+    L ALE    ++T++ P +  I  + A+   G    +   S+S    + T  +  
Sbjct: 710 FNLNLRLSALENNGVVKTISSPKIATIDNKEATIGQGISIPFSQTSAS--GVNTTFVEAK 767

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + L  TP V + G I L+I+   + P   + G N    PS   R+A+T V +  G T V+
Sbjct: 768 LELKVTPHVTADGSILLKIKATNNAPNSSLTGSNG--QPSISKREAETEVLVKDGETTVI 825

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G+           +P LSKIP+LG  FR+     + TE+ I  TP ++
Sbjct: 826 GGIYTRSTASKTASVPFLSKIPLLGFFFRSDTNTDDHTELLIFITPRIL 874


>gi|88705191|ref|ZP_01102902.1| GSP-D family Protein [Congregibacter litoralis KT71]
 gi|88700281|gb|EAQ97389.1| GSP-D family Protein [Congregibacter litoralis KT71]
          Length = 728

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 4/160 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE A     +++P +     Q A+  SG +  ++  ++S GAT+V   +  + L  T
Sbjct: 561 LSALEAAGKSEVVSQPKVITGDKQPATIKSGTEIPFQQAAAS-GATAVQFKEAVLKLDVT 619

Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +    RI L +   Q  V + V     G +P+    +  T V + +G T+VL G+ + 
Sbjct: 620 PNITPDDRILLDLVINQDSVGDLVPSGQGGLIPAIDTTQLTTQVLVGNGETVVLGGVFRT 679

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +  +    +P    +P +GALFRN    R +TE  I  TP
Sbjct: 680 ENLETTSKVPFFGDLPYVGALFRNESSQRTKTETLIFITP 719


>gi|330940238|gb|EGH43375.1| general secretion pathway protein D [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 295

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 9/171 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHD 311
           + +  L ALE     + L+ P+L  ++ Q A    G        S +T     T++++ +
Sbjct: 91  NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVE 150

Query: 312 Y---GVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSG 365
           Y   GV+L   P +   G + + IQ +VS       G  A   P    R   T V   SG
Sbjct: 151 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTDTTGNGANGNPRISTRSVATQVAAQSG 210

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP
Sbjct: 211 QTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITP 261


>gi|226951776|ref|ZP_03822240.1| general secretion pathway protein [Acinetobacter sp. ATCC 27244]
 gi|226837491|gb|EEH69874.1| general secretion pathway protein [Acinetobacter sp. ATCC 27244]
          Length = 735

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------T 305
           R ++  ++ AL+  T    L+ P++  +  + A    G    + T S +T         T
Sbjct: 463 RRAYGALIQALKANTKSNFLSTPSIVTMDNEEAYIVVGQNVPFVTGSVATQGNSTVNPYT 522

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELP 363
           +V   D G+ L   P +   G I L ++ EVS  +P  G  A D+ + + R   T+V   
Sbjct: 523 TVERKDVGITLKVVPHIGEGGSIRLEVEQEVSNVQPNRG-QATDLVTSK-RAIKTSVLAD 580

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G T++L GL+ DD    ++ IP+L  IP LG LFR    + ++  + +   P +V
Sbjct: 581 HGQTVILGGLISDDTNLTRQSIPVLGDIPYLGRLFRADTRSNDKRNLLVFIHPTIV 636


>gi|254516135|ref|ZP_05128195.1| type IV pilus secretin PilQ [gamma proteobacterium NOR5-3]
 gi|219675857|gb|EED32223.1| type IV pilus secretin PilQ [gamma proteobacterium NOR5-3]
          Length = 732

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 6/187 (3%)

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           D G    + G  F+V    +       L ALE A     +++P +     Q A+  SG +
Sbjct: 540 DLGSGSATSG--FAVGFTSNSLYLTAELSALEAAGKSEVVSQPKVITGDKQPATIKSGTE 597

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMP 349
             ++  ++S GAT+V   +  + L  TP +    RI L +   Q  V + V     G +P
Sbjct: 598 IPFQQAAAS-GATAVQFKEAVLKLDVTPNITPDDRILLDLVINQDSVGDLVPSGQGGLIP 656

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +    +  T V + +G T+VL G+ + +  +    +P    +P +GALFRN    R +TE
Sbjct: 657 AIDTTQLTTQVLVGNGETVVLGGVFRTENLETTSKVPFFGDLPYVGALFRNESNQRTKTE 716

Query: 410 IFIAATP 416
             I  TP
Sbjct: 717 TLIFITP 723


>gi|294649022|ref|ZP_06726469.1| general secretion pathway protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825090|gb|EFF83846.1| general secretion pathway protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 735

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------T 305
           R ++  ++ AL+  T    L+ P++  +  + A    G    + T S +T         T
Sbjct: 463 RRAYGALIQALKANTKSNFLSTPSIVTMDNEEAYIVVGQNVPFVTGSVATQGNSTVNPYT 522

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELP 363
           +V   D G+ L   P +   G I L ++ EVS  +P  G  A D+ + + R   T+V   
Sbjct: 523 TVERKDVGITLKVVPHIGEGGSIRLEVEQEVSNVQPNRG-QATDLVTSK-RAIKTSVLAD 580

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G T++L GL+ DD    ++ IP+L  IP LG LFR    + ++  + +   P +V
Sbjct: 581 HGQTVILGGLISDDTNLTRQSIPVLGDIPYLGRLFRADTRSNDKRNLLVFIHPTIV 636


>gi|209696322|ref|YP_002264253.1| general secretion pathway protein D [Aliivibrio salmonicida
           LFI1238]
 gi|208010276|emb|CAQ80608.1| general secretion pathway protein D [Aliivibrio salmonicida
           LFI1238]
          Length = 675

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 20/218 (9%)

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
           FQ + T +  G   + A+  GG    +G   S+        +  ++ A+   +    L+ 
Sbjct: 405 FQRNETTTEEGDYGALASALGG---VQGAAVSIM----MGDWTALITAVSTDSNSNILSS 457

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRI 328
           P++T +    ASF  G + +     S++G+       +V   + G+ L   P +     +
Sbjct: 458 PSITVMDNGEASFIVG-EEVPVLTGSTSGSNNENPFQTVERKEVGIKLKVVPQINEGNSV 516

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS  V+G N      +  R+  T+V +  G  +VL GL+ +   + +  +P L
Sbjct: 517 RLDIEQEVSN-VLGANGAVDVRFAKRQLSTSVMVEDGKMLVLGGLIDERAMESESKVPFL 575

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
             IPILG LF+++    E+  + I      +KP  +RD
Sbjct: 576 GDIPILGYLFKSTSTQVEKKNLMI-----FIKPTIIRD 608


>gi|88799604|ref|ZP_01115180.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
 gi|88777689|gb|EAR08888.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
          Length = 519

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 35/262 (13%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFGGKFVSE----GGDFSV 247
           + QV ++  I EV  D   + G   S    + G   + A     G  +S     GG F++
Sbjct: 250 QKQVIIEAKIVEVTLDQEYRSGINWSFFNDNFGSGNNSAGIGLDGNAISGAGGVGGVFNL 309

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----- 302
              LD F+  ++L  L+    ++ L+ P ++ I+ Q A    G    + T+ S T     
Sbjct: 310 SLSLDNFT--SMLQLLDHQGDVQVLSSPRVSTINNQKAVIKVGTDEFFATIQSITTEVND 367

Query: 303 -GATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAG 346
             + SVTT           G+ L  TP +     + L ++  V+E V       +G  + 
Sbjct: 368 DDSDSVTTVPAFELEQFFSGIALDVTPQIADDDSVTLHVRPTVTEVVEDTKTLDVGGRSY 427

Query: 347 DMP-SY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            +P +Y  +R++D+ +   SG  +V+ GLL+        G+P    IP++  LF   R +
Sbjct: 428 QLPLAYSNIRESDSIIRAQSGQIVVIGGLLQQKQDLGTTGLPWFQTIPVIRGLFAQDRES 487

Query: 405 REETEIFIAATPFLVKPVAMRD 426
           ++++E+ I     L+KP    D
Sbjct: 488 QQKSELVI-----LLKPTVYND 504


>gi|319791917|ref|YP_004153557.1| type IV pilus secretin pilq [Variovorax paradoxus EPS]
 gi|315594380|gb|ADU35446.1| type IV pilus secretin PilQ [Variovorax paradoxus EPS]
          Length = 713

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 2/137 (1%)

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           Q+ +    G+ +    ++S+GATS++     + L  TP +   G I L +  +VS+   G
Sbjct: 572 QTKALIEQGEEIPYQQATSSGATSISFRKAVLKLEVTPQITPEGNIILTL--DVSKDARG 629

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           VN    P+   +   T V + +GGT+V+ G+ +      +  +P+L +IP +GALFR   
Sbjct: 630 VNTSAGPAINTKHVQTEVLVENGGTVVIGGIFELTETNDESRVPVLGEIPYMGALFRKRE 689

Query: 403 FNREETEIFIAATPFLV 419
               +TE+ +  TP ++
Sbjct: 690 RVANKTEMLVFITPKMI 706


>gi|297537339|ref|YP_003673108.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
 gi|297256686|gb|ADI28531.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
          Length = 608

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 133/314 (42%), Gaps = 55/314 (17%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--VSEGGD--FS 246
           + + QV ++ TI EV  +   + G   S  GS       F    G +   V+   +   S
Sbjct: 312 SAKKQVLIEATIVEVTLNDGYKAGIDWSRLGSLGSAGFVFKQALGPQLGAVNSAANVTLS 371

Query: 247 VKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             G++  ++       + +  LE+    + L+ P L  ++ Q+A        +Y TV S 
Sbjct: 372 SSGIIAGYTNGNRGILSSVQLLEQFGNTKVLSSPKLMVLNNQTAVLKVVDNLVYFTVQSQ 431

Query: 302 ----------TGATSVTTHD----YGVVLHFTPTVLSPGRIGLRIQTEVS---------E 338
                     T   SVTT       GVV+  TP +   G + + ++  ++          
Sbjct: 432 ISQSASGVAGTNLQSVTTTPNTVPVGVVMSVTPQINDTGNVNINVRPTITSLIRYVPDPN 491

Query: 339 PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           P I  +     +P  R R+ ++ +++ SG   VL GL++D+I+   E +P LSK+P +G 
Sbjct: 492 PQIQKSPDFQGIPEIRTREMESLLQISSGNIAVLGGLMQDEIKNSTEAVPGLSKVPGVGK 551

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           +F+    + ++TE+ I   P ++             + S+E D  A +     K Y P +
Sbjct: 552 VFQGKNDSNQKTELVIFLRPTVIP------------NASLESDELAHY-----KQYLPTQ 594

Query: 457 ----ASEVEGQNYK 466
               ASE E +N +
Sbjct: 595 ALERASEAEAENER 608


>gi|242237793|ref|YP_002985974.1| outer membrane porin HofQ [Dickeya dadantii Ech703]
 gi|242129850|gb|ACS84152.1| type IV pilus secretin PilQ [Dickeya dadantii Ech703]
          Length = 426

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +  + +  T
Sbjct: 256 LMALEQEDEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 315

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +L  G I L +    + P   I    G+M +   ++  T V +  G TIVL G+ +  
Sbjct: 316 PRILQGGFITLNLLISQNMPGRSIKQGEGEMLAIDKQEIQTQVTVKDGETIVLGGIFQQQ 375

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             + +  +P L  +P +G LF +S       E+ I  TP L++
Sbjct: 376 KNRTERKVPGLGALPGIGRLFSSSDRQNTRRELVIFITPTLIQ 418


>gi|221069105|ref|ZP_03545210.1| general secretion pathway protein D [Comamonas testosteroni KF-1]
 gi|220714128|gb|EED69496.1| general secretion pathway protein D [Comamonas testosteroni KF-1]
          Length = 793

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 15/167 (8%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATS-----VTTH---DYGVVLHFTPTV 322
           L+ P L  +  + AS   G    + T S ++T  TS      TT+   D G +L   P +
Sbjct: 540 LSTPNLMTLDNEEASIMVGENVPFPTGSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQI 599

Query: 323 LSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              G I + +  E S    G  NA    +   R  ++ V +  G  +VL GL+ D+  Q 
Sbjct: 600 NENGTIKMAVYQENSAVKQGTANAQSGATTTKRSIESNVLVEDGAIVVLGGLIADEYSQS 659

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +E +PLL  IP+LG LFRN+   R++T + +    FL +P  +RD S
Sbjct: 660 QERVPLLGDIPLLGNLFRNTSRARKKTNLMV----FL-RPTVLRDAS 701


>gi|331005872|ref|ZP_08329224.1| Helix-turn-helix, AraC type [gamma proteobacterium IMCC1989]
 gi|330420316|gb|EGG94630.1| Helix-turn-helix, AraC type [gamma proteobacterium IMCC1989]
          Length = 659

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 24/244 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--EGGD-------F 245
           QV ++  I E+  D+ +++G + +    ++G   S  +   G   +  E GD       F
Sbjct: 359 QVLVEAIIVEITNDLSRELGVEWAAYKQNNGFIGSRNSATLGTLATAIESGDGIAGAPNF 418

Query: 246 SVKGV-----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           + +G+      +   F  +++  + +     L+ P+L       A  + G    + T S 
Sbjct: 419 TGQGLGFFGNSNGVDFAGLINFFQGSAEANVLSTPSLLTTDNNEAEISIGQNVPFVTGSF 478

Query: 301 STGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
           +T +        ++   D G+ L  TP +     + L IQ EVS       A D+ +   
Sbjct: 479 TTSSGDSTDPFQTIEREDVGISLKVTPQINEGDTVNLEIQQEVSSISNSSQASDVITNE- 537

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN--SRFNREETEIF 411
           RK  T V    G TI+L GL+ ++++Q ++ +P L  IP+LG LFRN  +  +++   +F
Sbjct: 538 RKISTKVIAQDGETIILGGLISNEVRQDEQKVPFLGDIPLLGGLFRNDSTTSSKQNLMVF 597

Query: 412 IAAT 415
           + AT
Sbjct: 598 LRAT 601


>gi|220915798|ref|YP_002491102.1| type IV pilus secretin PilQ [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953652|gb|ACL64036.1| type IV pilus secretin PilQ [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 887

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 7/169 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
           F+    L ALE    ++T++ P +  I  + A+   G    +   S+S    + T  +  
Sbjct: 710 FNLNLRLSALENNGVVKTISSPKIATIDNKEATIGQGISIPFSQTSAS--GVNTTFVEAK 767

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + L  TP V + G I L+I+   + P   + G N    PS   R+A+T V +  G T V+
Sbjct: 768 LELKVTPHVTADGSILLKIKATNNAPNSSLTGSNG--QPSISKREAETEVLVKDGETTVI 825

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G+           +P LSKIP+LG  FR+     + TE+ I  TP ++
Sbjct: 826 GGIYTRSTASKTASVPFLSKIPLLGFFFRSDTNTDDHTELLIFITPRIL 874


>gi|217969316|ref|YP_002354550.1| type II and III secretion system protein [Thauera sp. MZ1T]
 gi|217506643|gb|ACK53654.1| type II and III secretion system protein [Thauera sp. MZ1T]
          Length = 625

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 21/187 (11%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------------GATSV 307
           L  LE    ++ L+ P L+ ++ Q+A      + +Y  V S+T              T+ 
Sbjct: 358 LELLETFGTVKVLSSPRLSVLNNQTAMLKVVEEVVYFLVDSTTTEYDDRKQARISATTTP 417

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMPSYRVRKADT 358
            +   G+V+  TP + + G I L ++  +S          P +G     +P  R R+ ++
Sbjct: 418 QSVSVGMVMSVTPQISADGDITLNVRPTISGISGFKDDPNPSLGDIPNRVPQIRTREIES 477

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + L SG   VL GL++D I      IPL   +P++G LF     N   TE+ I   P L
Sbjct: 478 MLRLRSGEVAVLGGLMEDRIDHDTGRIPLFGDLPVVGELFTRRDNNVRRTELLIFLRPLL 537

Query: 419 VKPVAMR 425
           +    MR
Sbjct: 538 IDEPGMR 544


>gi|312958540|ref|ZP_07773060.1| type IV pilus biogenesis protein [Pseudomonas fluorescens WH6]
 gi|311287083|gb|EFQ65644.1| type IV pilus biogenesis protein [Pseudomonas fluorescens WH6]
          Length = 460

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 4/191 (2%)

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           PS  F  D G    + G    +  + D    +  L A+E+      +++P +     ++A
Sbjct: 262 PSSPFV-DLGSLTGTSG--LGIAYITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETA 318

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
               G +  Y+  S+S GATSV+  +  + L  TP +     + + ++    EP      
Sbjct: 319 RILKGTEIPYQE-STSQGATSVSFKEASLSLEVTPQITPDNHVIMVVKVTKDEPDYLNKL 377

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            D+P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR      
Sbjct: 378 NDVPPIKKNEVNAKVLVKDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVLAE 437

Query: 406 EETEIFIAATP 416
           +++E+ +  TP
Sbjct: 438 KKSELLVFLTP 448


>gi|163751641|ref|ZP_02158861.1| type IV pilus biogenesis protein PilQ [Shewanella benthica KT99]
 gi|161328467|gb|EDP99622.1| type IV pilus biogenesis protein PilQ [Shewanella benthica KT99]
          Length = 681

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+      +A P +   S Q A++   G  +    SSS+GA
Sbjct: 502 FHVARLADGTILDMELSALEQENRGEIIASPRIVT-SNQKAAYIEQGVEIPYIESSSSGA 560

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           T+V+     + L  TP +    R+   L I  +    V+    G+  S   ++  T V +
Sbjct: 561 TTVSFKKAVLSLRVTPHITPDNRVILDLEITQDSQGAVVATPMGEAVSIDTQRIGTQVLV 620

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             G TIVL G+ + ++      +P+L  IP LG LFR++  + E  E+ I  T  ++
Sbjct: 621 NHGETIVLGGIYQQNLISRVTKVPILGDIPFLGFLFRSTSDSNERQELLIFITAKII 677


>gi|127511323|ref|YP_001092520.1| pilus (MSHA type) biogenesis protein MshL [Shewanella loihica PV-4]
 gi|126636618|gb|ABO22261.1| pilus (MSHA type) biogenesis protein MshL [Shewanella loihica PV-4]
          Length = 563

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 32/253 (12%)

Query: 195 QVTLKVTIAEVR-RDILKQIGFQHSITGSSSGPSKSF----AADFGGKFVSE--GG--DF 245
           QV L+  + EV   D  +Q     S+ G S   S  F    A D  G  ++   GG    
Sbjct: 289 QVILEAKVLEVTLSDGYQQGIHWESVLGQSGNNSIEFGTSPAPDGLGDVITSAIGGITSL 348

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302
            +KG      F T+++ L+    +  L+ P +TA + Q A    G    + T  SST   
Sbjct: 349 QIKGK----DFSTMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGRDEYFVTDVSSTTVA 404

Query: 303 GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGD----- 347
           G T VTT +        G+ L  TP +   G + L I     ++ E    +   D     
Sbjct: 405 GTTPVTTPEVELTPFFSGIALDVTPQIDEEGSVLLHIHPSVIDIKEQNKSIKVSDSTLEL 464

Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +    +R++DT ++  +G  +V+ GL+K +  +L   +PLL  IP LG  F N   +  
Sbjct: 465 PLAQSEIRESDTVIKANTGDVVVIGGLMKSENIELISKVPLLGDIPFLGEAFTNRSNSLR 524

Query: 407 ETEIFIAATPFLV 419
           +TE+ I   P +V
Sbjct: 525 KTELVILLKPTVV 537


>gi|170721649|ref|YP_001749337.1| type II and III secretion system protein [Pseudomonas putida W619]
 gi|169759652|gb|ACA72968.1| type II and III secretion system protein [Pseudomonas putida W619]
          Length = 625

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321
           I TLA P +  +S +  +    GQ +    ++S  +T       SVT  D G+ L   PT
Sbjct: 401 INTLASPVIR-VSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPT 459

Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           V     + +++  EVS   P+     G +P     R A T++ L  G T VLAGL+++D 
Sbjct: 460 VHLNNEVAIKVALEVSNATPLEPTRQGTIPVQVDTRNAQTSLRLHDGETQVLAGLVRNDK 519

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                 IP L  IP LG LF ++R +  ++E+ +A TP +V+
Sbjct: 520 TSSGNKIPGLGDIPGLGRLFGSNRDDMSKSELVLAITPRIVR 561


>gi|119505541|ref|ZP_01627613.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2080]
 gi|119458650|gb|EAW39753.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2080]
          Length = 723

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 6/161 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE +     +++P +     Q A+  SG +  Y+   +++GAT+V+  +  + L  T
Sbjct: 556 LSALESSGQGEVVSQPKIITGDKQLATIKSGSEIPYQE-GAASGATTVSFKEAVLKLEVT 614

Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK- 375
           P +    RI L +   Q  + + V     G +P+    +  T V + +G T+VL G+ + 
Sbjct: 615 PNITPDDRILLDLVVNQDSLGDLVPSGTGGLIPTINTTQLTTQVLVGNGETVVLGGVFQN 674

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           D+I Q+++ +P L  IP LG LF+N+     +TE  I  TP
Sbjct: 675 DEITQIRK-VPFLGDIPYLGTLFKNTASKTSKTETLIFITP 714


>gi|326562497|gb|EGE12814.1| type IV pilus secretin PilQ [Moraxella catarrhalis 103P14B1]
 gi|326572679|gb|EGE22668.1| type IV pilus secretin PilQ [Moraxella catarrhalis CO72]
 gi|326574278|gb|EGE24226.1| type IV pilus secretin PilQ [Moraxella catarrhalis 101P30B1]
          Length = 473

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 14/187 (7%)

Query: 244 DFSVKGVLDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           D  V   + R +F          +  L A++       ++ P +     Q+A  +SG Q 
Sbjct: 291 DLGVDNAMGRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQI 350

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            Y+  + S GA++    +  ++L  TP +   G+IGL++  +   PV  +  G + + + 
Sbjct: 351 PYQETTHS-GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL--GHI-AIQE 406

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
              +T V +  G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ I 
Sbjct: 407 DAIETNVIIEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIF 466

Query: 414 ATPFLVK 420
            TP LV+
Sbjct: 467 ITPKLVR 473


>gi|171060101|ref|YP_001792450.1| general secretion pathway protein D [Leptothrix cholodnii SP-6]
 gi|170777546|gb|ACB35685.1| general secretion pathway protein D [Leptothrix cholodnii SP-6]
          Length = 753

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 90/216 (41%), Gaps = 39/216 (18%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGGQHLYKTVSS 300
           G L RF        LE  T    L+ P L A+         GQ+  F +G    +    +
Sbjct: 490 GALARF--------LESNTGANVLSTPNLIALDNEEAKIVIGQNVPFVTGS---FTNTGT 538

Query: 301 STGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRK 355
           S G+     ++   D G+ L   P +   G + + I  E S  V         P+     
Sbjct: 539 SNGSANPFQTIERKDVGLTLRVKPQIGEGGTVRMVIYQENSSVVANTTTNSAGPTTDKSA 598

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            +TTV +  G  +VL GLLKDD    ++ +P L+ IP++G LFR+    R ++ + +   
Sbjct: 599 IETTVVVDDGSIMVLGGLLKDDYGSGEDRVPGLASIPLIGGLFRSENRKRTKSNLLV--- 655

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
              ++PV MR           + DA A   +R + I
Sbjct: 656 --FLRPVVMRS----------QQDANALTLDRYDAI 679


>gi|30250239|ref|NP_842309.1| pilQ; fimbrial type-4 assembly signal peptide protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30181034|emb|CAD86224.1| probable pilQ; fimbrial type-4 assembly signal peptide protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 718

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 4/161 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE  +  R +A P L   +   AS   G +  ++T+S +           G  L  T
Sbjct: 550 LSALESDSKGRVIASPRLVTANRVEASIEQGTEIPFQTISVTRPQIQFKKAVLG--LKVT 607

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     I +++Q  V++   G N    P+   ++  T V + +GGT+V+ G+ +   +
Sbjct: 608 PQITPDDNIIMKLQ--VNQDTRGENTPAGPAIDTKQIVTEVLVENGGTVVIGGIFEQVEK 665

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           Q +  +PLL  IP+LG LF+N+    ++ E+ I  TP ++ 
Sbjct: 666 QDRNQVPLLGDIPVLGNLFKNTAKRDDKRELLIFVTPRILN 706


>gi|262375159|ref|ZP_06068393.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
 gi|262310172|gb|EEY91301.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
          Length = 754

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 9/185 (4%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           GD+       R  +  ++ AL+  T    L+ P++  +  + A    G    + T S ST
Sbjct: 461 GDYREGSDGSRRLYGAMIQALKETTKSNLLSTPSIVTMDNEEAYIVVGENVPFVTGSVST 520

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVR 354
           GA       T++   D GV L   P +   G + L ++ EVS+       A D+ + + R
Sbjct: 521 GAAGVANPYTTIERKDVGVTLKVVPHIGEDGTVRLEVEQEVSDVKASKGQAQDLVTSK-R 579

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T++    G TIVL GL+ D+    ++ +P L  IP LG LFR+   + ++  + I  
Sbjct: 580 AIKTSILAEHGQTIVLGGLISDNTSYGRQAVPGLGAIPGLGRLFRSEGKSNQKRNLLIFI 639

Query: 415 TPFLV 419
            P +V
Sbjct: 640 HPTIV 644


>gi|288817748|ref|YP_003432095.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
 gi|288787147|dbj|BAI68894.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
 gi|308751347|gb|ADO44830.1| type II and III secretion system protein [Hydrogenobacter
           thermophilus TK-6]
          Length = 700

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 9/163 (5%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGAT-----SVTTHD 311
           +L+ L   T+++ L+ P +     + A    G +   L + +   TG T      V    
Sbjct: 504 ILNFLASKTSLKVLSAPHILVKDNEEAKIEVGAEVPILTQQIVPVTGGTLNVQNMVQYRT 563

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIV 369
            GV+L   PTV +   + L+I  EVS+ V      ++  P    R A TT+ L +    +
Sbjct: 564 TGVILKVRPTVSADNSVTLKITQEVSDAVKNTVQPELTSPLITKRSASTTLILRNDQVGL 623

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           L G++++ +Q+ K G+PLLS IP LG LF N   +   TE+ +
Sbjct: 624 LGGIIQNRLQRQKSGVPLLSDIPGLGILFSNESVSSSNTELIL 666


>gi|283788039|ref|YP_003367904.1| T2SS protein D [Citrobacter rodentium ICC168]
 gi|282951493|emb|CBG91192.1| putative T2SS protein D [Citrobacter rodentium ICC168]
          Length = 662

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 101/251 (40%), Gaps = 45/251 (17%)

Query: 237 KFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTLTAISGQ 283
           +F  +GG  S     D FS             +  +L AL   +    L+ P++  +  +
Sbjct: 394 EFKKQGGITSDNPAYDLFSKYRGMAAGFFSGDWAVLLTALSSDSKNDILSTPSIVTLDNK 453

Query: 284 SASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            ASF             T+ G ++Y TV   T          G  L  TP +     + +
Sbjct: 454 EASFNVGQDVPVLSGSQTTSGDNIYSTVERKT---------VGTKLKVTPQINEGDSVLM 504

Query: 331 RIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            I+ EVS      ++  + P++  R     V + SG T+VL GL+ D  ++    +PLL 
Sbjct: 505 EIEQEVSSVDSTASSSSLGPTFNTRTIQNAVLVKSGETVVLGGLMDDSSKEEVSKVPLLG 564

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
            IP +G LFR +   + +  + +      ++P  +RD    DD Y      K   F  + 
Sbjct: 565 DIPFIGQLFRYTNHEKSKRNLMV-----FIRPTIIRD----DDVYRSLSREKYTHFRDIQ 615

Query: 450 KIYGPKEASEV 460
           K    K +S++
Sbjct: 616 KTRADKNSSQL 626


>gi|260771969|ref|ZP_05880886.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio metschnikovii CIP 69.14]
 gi|260612836|gb|EEX38038.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio metschnikovii CIP 69.14]
          Length = 663

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 21/181 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  ++ A+   ++   L+ P++T +    ASF  G     + V   TG+T+ + +D    
Sbjct: 433 WTALISAVSSTSSTNILSSPSITVMDNGEASFIVG-----EEVPVLTGSTAGSNNDNPFQ 487

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L   P +     + L I+ EVS  V+G        +  R+ +TTV +  G
Sbjct: 488 TVERKEVGIKLKVVPQINEGDSVQLSIEQEVSN-VLGAQGAVDVRFAKRQLNTTVMVQDG 546

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL GL+ +   + +  +P+L  IP+LG LFR++    E+  + +      +KP  +R
Sbjct: 547 QMLVLGGLIDERTAESESKVPILGDIPLLGYLFRSTNTTVEKKNLMV-----FIKPTIIR 601

Query: 426 D 426
           D
Sbjct: 602 D 602


>gi|193076133|gb|ABO10746.2| putative general secretion pathway protein [Acinetobacter baumannii
           ATCC 17978]
          Length = 758

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 35/258 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-------------- 240
           QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S              
Sbjct: 394 QVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGSAGAA 453

Query: 241 -------EGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                    G+ +  G+ +    R ++  ++ AL+  T    L+ P++  +  + A    
Sbjct: 454 SAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPSIVTMDNEEAYIVV 513

Query: 290 GGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVI 341
           G    + T S +T +T +  +      D GV L   P +   G + L ++ EVS  +   
Sbjct: 514 GQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRLEVEQEVSAVQDSR 573

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G  A  + S R  K  T V    G T+VL GL+ DD    ++GIP LS IP +G LFR+ 
Sbjct: 574 GQAADLVTSKRAIK--TAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRLFRSD 631

Query: 402 RFNREETEIFIAATPFLV 419
             +  +  + +   P +V
Sbjct: 632 NRSNVKRNLLVFIHPTIV 649


>gi|325282922|ref|YP_004255463.1| type II and III secretion system protein [Deinococcus proteolyticus
           MRP]
 gi|324314731|gb|ADY25846.1| type II and III secretion system protein [Deinococcus proteolyticus
           MRP]
          Length = 655

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 39/231 (16%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLD 252
           Q+ L+V I E+  +  K +G    +T          A  F    +  G    F+    + 
Sbjct: 413 QINLQVRIQEINEEATKTLGVNWRVT----------AGGFNVGILPSGLTASFNPLQTVT 462

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQ----------------SASFTSGGQHLYK 296
            F+    L+ALE     + + + T++  SGQ                +AS  SGG  L  
Sbjct: 463 GFNIFPALNALESQRVAKRVYDGTVSMQSGQGSLNAGTGSQDASSTAAASIRSGG-RLEL 521

Query: 297 TVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPV------IGVNAGDMP 349
            +  + G+    T  YGVVL F  P+V   G I LR++ +++E          + +G  P
Sbjct: 522 NIIGAEGSNIEKTIPYGVVLDFFEPSVAPDGTITLRVRGQINELRNREALNAALASGGAP 581

Query: 350 S---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           S   +    A T +   SG T++LAGL+ ++    K G+P LS+IP LGAL
Sbjct: 582 SLLDFLNSDAQTKISFKSGETVLLAGLMAENNSTTKSGLPFLSQIPGLGAL 632


>gi|149376650|ref|ZP_01894409.1| Type II secretory pathway, component PulD [Marinobacter algicola
           DG893]
 gi|149359023|gb|EDM47488.1| Type II secretory pathway, component PulD [Marinobacter algicola
           DG893]
          Length = 578

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 35/275 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFGGKFVSE---GGD 244
           QV L+  I E+  +   Q G          S+T S   P    A    G+ ++    GG 
Sbjct: 286 QVVLEAKILEIGLNEGYQQGINWADIQSASSVTASDGLPEDFTAQALAGQVITTSDIGGL 345

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG 303
           FS    +    F  ++  L     ++ L+ P ++ ++ Q A    G    + T +     
Sbjct: 346 FSAS--VRAGDFTGLIELLGEQGNVQILSSPRISTVNNQKAVIKVGTDEFFVTDIDFDDN 403

Query: 304 ATSVTTHDY------------GVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAG 346
            ++VT  D             G+ L  TP +   G I L +   VSE      VI V   
Sbjct: 404 NSAVTATDRTSTSVELTPFFSGISLDVTPQISEDGAITLHVHPSVSEVNDQKKVITVGDR 463

Query: 347 D----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           D    +    VR+ D+ +   SG  +V+ GL+++  +     +P  S+IP+LG LF+  R
Sbjct: 464 DVTLPLALSTVRETDSVIRAESGQIVVIGGLIQNTSEDNNSAVPFFSEIPLLGELFKQRR 523

Query: 403 FNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSV 436
           F   ++E+ I   P +     M  D+S   D   V
Sbjct: 524 FQSRKSELVILLRPVVAGSQQMNADVSASRDRMRV 558


>gi|296113651|ref|YP_003627589.1| type IV pilus secretin PilQ [Moraxella catarrhalis RH4]
 gi|295921345|gb|ADG61696.1| type IV pilus secretin PilQ [Moraxella catarrhalis RH4]
 gi|326566933|gb|EGE17071.1| type IV pilus secretin PilQ [Moraxella catarrhalis 12P80B1]
 gi|326568865|gb|EGE18935.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC8]
          Length = 473

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 14/187 (7%)

Query: 244 DFSVKGVLDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           D  V   + R +F          +  L A++       ++ P +     Q+A  +SG Q 
Sbjct: 291 DLGVDNAMGRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQI 350

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            Y+  + S GA++    +  ++L  TP +   G+IGL++  +   PV  +  G + + + 
Sbjct: 351 PYQETTHS-GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL--GHI-AIQE 406

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
              +T V +  G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ I 
Sbjct: 407 DAIETNVIIEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIF 466

Query: 414 ATPFLVK 420
            TP LV+
Sbjct: 467 ITPKLVR 473


>gi|264676762|ref|YP_003276668.1| general secretion pathway protein D [Comamonas testosteroni CNB-2]
 gi|262207274|gb|ACY31372.1| general secretion pathway protein D [Comamonas testosteroni CNB-2]
          Length = 793

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 15/165 (9%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATS-----VTTH---DYGVVLHFTPTV 322
           L+ P L  +  + AS   G    + T S ++T  TS      TT+   D G +L   P +
Sbjct: 540 LSTPNLMTLDNEEASIMVGENVPFPTGSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQI 599

Query: 323 LSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              G I + +  E S    G  NA    +   R  ++ V +  G  +VL GL+ D+  Q 
Sbjct: 600 NENGTIKMAVYQENSAVKQGTANAQSGATTTKRSIESNVLVEDGAIVVLGGLIADEYSQS 659

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +E +PLL  IP+LG LFRN+   R++T + +    FL +P  +RD
Sbjct: 660 QERVPLLGDIPLLGNLFRNTSRERKKTNLMV----FL-RPTVLRD 699


>gi|119898381|ref|YP_933594.1| general secretion pathway protein D [Azoarcus sp. BH72]
 gi|119670794|emb|CAL94707.1| general secretion pathway protein D [Azoarcus sp. BH72]
          Length = 675

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 130/273 (47%), Gaps = 25/273 (9%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAADF 234
           +++V+  L++A E +V L+V + EV R+ L+ +G ++       +   +   + S AA F
Sbjct: 320 AERVLASLDVA-EPEVMLEVEVLEVSRNKLQDLGIEYPTQVGYGLLTPNVTSTVSTAAGF 378

Query: 235 GGKFVSEGGDFSVKGVL---DRFSF-------ETVLHALERATAIRTLAEPTLTAISGQS 284
                + GG+ + KG++   DR S          VL+          LA P +   + + 
Sbjct: 379 ATS-TTLGGELA-KGMINLRDRGSLVPYVSNPGAVLNLRAEDGDTSLLANPRIRVKNREK 436

Query: 285 ASFTSGGQH--LYKTVSSSTG-ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           A    G +      T +++ G + SV   D G+ L   P V     + +++  EVS  V 
Sbjct: 437 AKIHIGEKLPVFTTTATANVGVSASVNYLDVGLKLDVEPAVTLEDEVVIKVALEVSSIVK 496

Query: 342 GVNAGDMP-SYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            V       +Y+V  R A TT+ L +G T VLAGL+ D+ +     +P L ++P++G LF
Sbjct: 497 EVTGPSSSLAYQVGTRSAATTLRLANGETQVLAGLINDEERSSARRLPGLGELPVVGRLF 556

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
              R +  +TE+ +  TP +V+ V    L+R D
Sbjct: 557 SAQRDSNTKTEVVLLITPRIVRNVVAPSLARAD 589


>gi|226943724|ref|YP_002798797.1| general secretion pathway protein D [Azotobacter vinelandii DJ]
 gi|226718651|gb|ACO77822.1| general secretion pathway protein D [Azotobacter vinelandii DJ]
          Length = 752

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 13/168 (7%)

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVL 323
           + P L   SG+ A+   G +     V+ +T +T         +V     GV+L+  PTV 
Sbjct: 546 SSPKLMVRSGEEATIEVGNE--IPVVTGTTQSTDTDNAPITQTVQYRKTGVLLNIKPTVQ 603

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           + G + L+I  E+SE         + P    R+ +T + L  GG+++LAGL+     +  
Sbjct: 604 ASGVVDLKISQELSESTDTGTGDTLTPIINNRRVETALTLRDGGSVMLAGLISSSKGKGD 663

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSR 429
            G+PLL  +P +G LF++   +   TE+ +   P++V+     +DLSR
Sbjct: 664 NGVPLLGDLPWIGNLFKSQSNSETRTELIVMIIPYVVRDFDEAQDLSR 711


>gi|238754545|ref|ZP_04615899.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
 gi|238707176|gb|EEP99539.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
          Length = 674

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 16/208 (7%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVT 308
           R ++  +  AL   ++   LA P++  +    A F+ G +       +T S+     +++
Sbjct: 434 RGNWSGLFTALATNSSNEILATPSIVTLDNMDAEFSVGQEVPVLSSQQTTSTDKVYNTIS 493

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSG 365
               G++L   P +     + L I+ EVS      N        ++  R  +  V + SG
Sbjct: 494 RQSVGIMLKVKPQINKGDSVLLEIRQEVSSVAENSNVDKDNIGSTFNKRVVNNAVLVKSG 553

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T+V+ GLL   +  +   IPLL  IPI+G LFR  +   E+  + +      +KP  +R
Sbjct: 554 ETVVVGGLLDKKVSNVINKIPLLGDIPIIGNLFRQKKEKIEKRNLIL-----FIKPTIIR 608

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           +    DD+ S   + K+  FN  N  + 
Sbjct: 609 E---SDDYLSTTSE-KSKTFNEKNNDWN 632


>gi|237653194|ref|YP_002889508.1| general secretion pathway protein D [Thauera sp. MZ1T]
 gi|237624441|gb|ACR01131.1| general secretion pathway protein D [Thauera sp. MZ1T]
          Length = 728

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 110/272 (40%), Gaps = 49/272 (18%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-------------------- 234
           QV ++  IAE+  +   + GFQ  + G+S+G      A                      
Sbjct: 408 QVYIEALIAEISTERAAEFGFQW-VAGASAGEVGVLGAQLFNSGGGNLGQLIAGSADRTR 466

Query: 235 ------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                 G   V  GG  +V G+ +  S   +   LE   +   L+ P L  +  + A   
Sbjct: 467 LTLPNNGLNLVVGGGKVNVPGIGEVLSLGVLARFLENEVSANILSTPNLITLDNEEARIV 526

Query: 289 SG-------GQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            G       GQ+   T   +T A    T    D G+ LH  P +   G I L+I  E S 
Sbjct: 527 VGRNLPFVTGQY-ANTGGGTTPANPFQTIERRDVGLTLHVKPQISEGGAIRLQIYQEASA 585

Query: 339 PVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            V+G      AG+  + + R  ++ V +  G  + L GL++D     +E +P+L  +P  
Sbjct: 586 -VVGSAESAAAGNSVTTK-RSIESMVLVDDGAILALGGLVEDSYSGGEEKVPVLGDLPFA 643

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           G+LFR     R +T + +      ++PV +RD
Sbjct: 644 GSLFRYDTRKRAKTNLVV-----FLRPVILRD 670


>gi|119899935|ref|YP_935148.1| type 4 fimbrial biogenesis protein [Azoarcus sp. BH72]
 gi|119672348|emb|CAL96262.1| probable type 4 fimbrial biogenesis protein [Azoarcus sp. BH72]
          Length = 707

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     R ++ P +   +   AS   G +  Y   SSS GAT+V      + L   
Sbjct: 542 LAALESDGRGRVVSSPRVLTANQVEASIEQGTEVPYLQASSS-GATNVAFKKAVLSLKVK 600

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   GR+ L I+     P+      ++P    +   + V + +GGT+V+ G+ +++  
Sbjct: 601 PQITPDGRLQLSIEVNKDRPLFESAVLNVPPIETKNVKSEVLIDNGGTVVIGGIYEEEET 660

Query: 380 QLKEGIPLLSKIPILGALFRNSR--FNREETEIFIAATPFLV 419
             ++ +P+L ++P++G LFR      NR+E  +FI  TP +V
Sbjct: 661 SNEDRVPILGELPVVGFLFRTRSKISNRKELLVFI--TPKIV 700


>gi|326575064|gb|EGE24993.1| type IV pilus secretin PilQ [Moraxella catarrhalis O35E]
          Length = 473

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 14/187 (7%)

Query: 244 DFSVKGVLDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           D  V   + R +F          +  L A++       ++ P +     Q+A  +SG Q 
Sbjct: 291 DLGVDNAMGRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQI 350

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            Y+  + S GA++    +  ++L  TP +   G+IGL++  +   PV  +  G + + + 
Sbjct: 351 PYQETTHS-GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL--GHI-AIQE 406

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
              +T V +  G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ I 
Sbjct: 407 DAIETNVIIEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIF 466

Query: 414 ATPFLVK 420
            TP LV+
Sbjct: 467 ITPKLVR 473


>gi|148547514|ref|YP_001267616.1| type II and III secretion system protein [Pseudomonas putida F1]
 gi|148511572|gb|ABQ78432.1| type II and III secretion system protein [Pseudomonas putida F1]
          Length = 621

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321
           I TLA P +  +S +  +    GQ +    ++S  +T       SVT  D G+ L   PT
Sbjct: 401 INTLASPVIR-VSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPT 459

Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           V     + +++  EVS   P+     G +P     R A T++ L  G T VLAGL+++D 
Sbjct: 460 VHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDGETQVLAGLVRNDH 519

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                 IP L  IP LG LF +++ +  ++E+ +A TP +V+
Sbjct: 520 NASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVR 561


>gi|326560015|gb|EGE10410.1| type IV pilus secretin PilQ [Moraxella catarrhalis 46P47B1]
          Length = 473

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 14/187 (7%)

Query: 244 DFSVKGVLDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           D  V   + R +F          +  L A++       ++ P +     Q+A  +SG Q 
Sbjct: 291 DLGVDNAMGRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQI 350

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            Y+  + S GA++    +  ++L  TP +   G+IGL++  +   PV  +  G + + + 
Sbjct: 351 PYQETTHS-GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL--GHI-AIQE 406

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
              +T V +  G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ I 
Sbjct: 407 DAIETNVIIEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIF 466

Query: 414 ATPFLVK 420
            TP LV+
Sbjct: 467 ITPKLVR 473


>gi|254443244|ref|ZP_05056720.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198257552|gb|EDY81860.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 582

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 18/177 (10%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSSTGATS 306
           D+F F  VL AL+     R ++ PT+  ++ Q A  + G Q     + Y   +     + 
Sbjct: 378 DQFGF--VLSALKEQGGSRLVSNPTVVTLNNQEAMISVGEQFPIPNYQYNEETGGFEVSG 435

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTTVE 361
               D G++L  TP+V   G I +++  EVS         G     +P    R+ +T + 
Sbjct: 436 FEFKDIGIILKVTPSVNHTGLITMKVVPEVSSRTGERSFGGAGNASIPIISTRRTETRIA 495

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE----IFIAA 414
           L  G T+ + GL++    + K  +P+L K+P LG LF++   ++ ET+    IFI A
Sbjct: 496 LKDGFTMGIGGLMESTGTEDKNHVPVLGKVPGLGRLFKHE--SKSETKRNLLIFITA 550


>gi|26990190|ref|NP_745615.1| type II and III secretion system protein [Pseudomonas putida
           KT2440]
 gi|24985131|gb|AAN69079.1|AE016541_7 secretion protein, putative [Pseudomonas putida KT2440]
          Length = 621

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321
           I TLA P +  +S +  +    GQ +    ++S  +T       SVT  D G+ L   PT
Sbjct: 401 INTLASPVIR-VSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPT 459

Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           V     + +++  EVS   P+     G +P     R A T++ L  G T VLAGL+++D 
Sbjct: 460 VHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDGETQVLAGLVRNDH 519

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                 IP L  IP LG LF +++ +  ++E+ +A TP +V+
Sbjct: 520 NASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVR 561


>gi|163749924|ref|ZP_02157169.1| general secretion pathway protein D [Shewanella benthica KT99]
 gi|161330438|gb|EDQ01417.1| general secretion pathway protein D [Shewanella benthica KT99]
          Length = 711

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 10/168 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTT 309
           F  ++ A+   T    LA P++T +  Q A+F  G +    T S S+        T+V  
Sbjct: 446 FGALIQAISSDTRSNILATPSITTLDNQEATFIVGDEVPILTGSQSSSNGNSNPFTTVER 505

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            + GV L   P +     + L I+ EVS  + G  + D+ ++  R+  TTV + SG  +V
Sbjct: 506 REVGVKLKVIPQINEGTSVKLTIEQEVS-GINGKTSVDV-TFATRRLTTTVMVDSGQIVV 563

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE--IFIAAT 415
           L GL+ +++Q+  + +P L  +PI+G LFR+S  ++++    IFI AT
Sbjct: 564 LGGLISEEVQESVQKVPFLGDLPIIGHLFRSSSSSKKKKNLMIFIKAT 611


>gi|169797464|ref|YP_001715257.1| putative general secretion pathway protein [Acinetobacter baumannii
           AYE]
 gi|184156612|ref|YP_001844951.1| Type II secretory pathway, component PulD [Acinetobacter baumannii
           ACICU]
 gi|213155722|ref|YP_002317767.1| general secretion pathway protein D [Acinetobacter baumannii
           AB0057]
 gi|215484901|ref|YP_002327140.1| general secretion pathway protein D [Acinetobacter baumannii
           AB307-0294]
 gi|301347975|ref|ZP_07228716.1| general secretion pathway protein D [Acinetobacter baumannii AB056]
 gi|301510797|ref|ZP_07236034.1| general secretion pathway protein D [Acinetobacter baumannii AB058]
 gi|301596692|ref|ZP_07241700.1| general secretion pathway protein D [Acinetobacter baumannii AB059]
 gi|332874904|ref|ZP_08442755.1| general secretion pathway protein D [Acinetobacter baumannii
           6014059]
 gi|169150391|emb|CAM88288.1| putative general secretion pathway protein [Acinetobacter baumannii
           AYE]
 gi|183208206|gb|ACC55604.1| Type II secretory pathway, component PulD [Acinetobacter baumannii
           ACICU]
 gi|213054882|gb|ACJ39784.1| general secretion pathway protein D [Acinetobacter baumannii
           AB0057]
 gi|213988659|gb|ACJ58958.1| general secretion pathway protein D [Acinetobacter baumannii
           AB307-0294]
 gi|322506499|gb|ADX01953.1| PulD [Acinetobacter baumannii 1656-2]
 gi|323516378|gb|ADX90759.1| Type II secretory pathway, component PulD [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332736847|gb|EGJ67823.1| general secretion pathway protein D [Acinetobacter baumannii
           6014059]
          Length = 758

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 110/258 (42%), Gaps = 35/258 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-------------- 240
           QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S              
Sbjct: 394 QVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGSAGAA 453

Query: 241 -------EGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                    G+ +  G+ +    R ++  ++ AL+  T    L+ P++  +  + A    
Sbjct: 454 SAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPSIVTMDNEEAYIVV 513

Query: 290 GGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVI 341
           G    + T S +T +T +  +      D GV L   P +   G + L ++ EVS  +   
Sbjct: 514 GQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRLEVEQEVSAVQDSR 573

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G  A D+ + + R   T V    G T+VL GL+ DD    ++GIP LS IP +G LFR+ 
Sbjct: 574 G-QAADLVTSK-RAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRLFRSD 631

Query: 402 RFNREETEIFIAATPFLV 419
             +  +  + +   P +V
Sbjct: 632 NRSNVKRNLLVFIHPTIV 649


>gi|90413595|ref|ZP_01221585.1| putative fimbrial assembly protein [Photobacterium profundum 3TCK]
 gi|90325368|gb|EAS41857.1| putative fimbrial assembly protein [Photobacterium profundum 3TCK]
          Length = 565

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 7/164 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q+A    G +  Y   SSS GA S+      + L  T
Sbjct: 403 LSALQSESKAEIISSPRLVTTNKQTAYIEQGTEIPYLEASSS-GAVSIDFKKAVLSLMVT 461

Query: 320 PTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           P +    ++ L +     EP    V G+  G+  S   ++  T V + +G TIVL G+ +
Sbjct: 462 PQITPDNKLVLDLVVTQDEPGKTVVTGI--GEAVSINTQRIGTQVLVENGETIVLGGIYQ 519

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             + +    +PLL  +P LGALFR+S     + E+ I  TP +V
Sbjct: 520 HQMNKSVSKVPLLGDLPYLGALFRHSLEEMGKRELLIFITPKIV 563


>gi|299529584|ref|ZP_07043021.1| general secretion pathway protein D [Comamonas testosteroni S44]
 gi|298722447|gb|EFI63367.1| general secretion pathway protein D [Comamonas testosteroni S44]
          Length = 750

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 15/165 (9%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATS-----VTTH---DYGVVLHFTPTV 322
           L+ P L  +  + AS   G    + T S ++T  TS      TT+   D G +L   P +
Sbjct: 497 LSTPNLMTLDNEEASIMVGENVPFPTGSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQI 556

Query: 323 LSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              G I + +  E S    G  NA    +   R  ++ V +  G  +VL GL+ D+  Q 
Sbjct: 557 NENGTIKMAVYQENSAVKQGTANAQSGATTTKRSIESNVLVEDGAIVVLGGLIADEYSQS 616

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +E +PLL  IP+LG LFRN+   R++T + +    FL +P  +RD
Sbjct: 617 QERVPLLGDIPLLGNLFRNTSRERKKTNLMV----FL-RPTVLRD 656


>gi|196230668|ref|ZP_03129529.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
 gi|196225009|gb|EDY19518.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
          Length = 864

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 57/213 (26%)

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------- 297
           +V GV     F+ V+ AL +   +  L+ P +T  SGQ A      +  Y T        
Sbjct: 599 AVAGVFTDPQFQLVIRALNQKKGVDLLSSPKVTTKSGQRAVIEIIREFRYPTEFTPPQIP 658

Query: 298 -----------------------VSSSTGATSVTTHDYGVVLHFTPTVLSPG-------- 326
                                    + T  T+  T + GV L   P +   G        
Sbjct: 659 QTFGNTGGGILGGGGGSSSTGSFPVTPTTPTAFETRNTGVTLEVEPVIGPDGYTIDLNLV 718

Query: 327 ----------RIGLRIQTEVSEPVIGV--------NAGDMPSYRVRKADTTVELPSGGTI 368
                       G  I + V+ P+ G         N  + P +  RK  T+V +  G T+
Sbjct: 719 PQVVEFEGFINYGSPITSSVTNPITGTSTQAVITPNVINQPIFSTRKVTTSVSVYDGSTV 778

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           VL GL+++D+Q++++ +P++  +PI+G LFR+S
Sbjct: 779 VLGGLIREDVQKVEDKVPIIGDVPIIGRLFRSS 811


>gi|78064721|ref|YP_367490.1| type II and III secretion system protein [Burkholderia sp. 383]
 gi|77965466|gb|ABB06846.1| type II and III secretion system protein [Burkholderia sp. 383]
          Length = 781

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 12/153 (7%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336
           + GQ+    +G    Y  ++S     +  T+D    G+ LH  P +   G + L++ TE 
Sbjct: 533 VVGQNVPIATGS---YSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTED 589

Query: 337 SEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           S  V G  +    P++  R   +T+   +G  IVL GL++D+ Q     +PLL  IP +G
Sbjct: 590 SAVVAGTTSAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 649

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
            LFR+    R +T + +      ++PV + D S
Sbjct: 650 QLFRSESKIRAKTNLMV-----FLRPVIISDRS 677


>gi|239502032|ref|ZP_04661342.1| general secretion pathway protein D [Acinetobacter baumannii AB900]
          Length = 758

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 110/258 (42%), Gaps = 35/258 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-------------- 240
           QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S              
Sbjct: 394 QVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGSAGAA 453

Query: 241 -------EGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                    G+ +  G+ +    R ++  ++ AL+  T    L+ P++  +  + A    
Sbjct: 454 SAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPSIVTMDNEEAYIVV 513

Query: 290 GGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVI 341
           G    + T S +T +T +  +      D GV L   P +   G + L ++ EVS  +   
Sbjct: 514 GQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRLEVEQEVSAVQDSR 573

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G  A D+ + + R   T V    G T+VL GL+ DD    ++GIP LS IP +G LFR+ 
Sbjct: 574 G-QAADLVTSK-RAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRLFRSD 631

Query: 402 RFNREETEIFIAATPFLV 419
             +  +  + +   P +V
Sbjct: 632 NRSNVKRNLLVFIHPTIV 649


>gi|146309174|ref|YP_001189639.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
 gi|145577375|gb|ABP86907.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
          Length = 748

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 15/151 (9%)

Query: 282 GQSASFTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
           GQ+  F +G    Y T +S  G   T++   D GV L  TP +     + L I+ E+S  
Sbjct: 442 GQNVPFQTGS---YTTDASGAGNPFTTIERKDIGVTLKVTPHINDGATLRLVIEQEISSI 498

Query: 339 -PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            P  G+NA   D+ + + R   +TV    G  IVL GL++DD       +PLL  IP +G
Sbjct: 499 APSTGLNAQAVDLVTNK-RSIKSTVLADDGQVIVLGGLIQDDTSASASKVPLLGDIPGVG 557

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            LFR++R  R++  + +      ++P   RD
Sbjct: 558 RLFRSTRDARQKRNLMV-----FLRPSVARD 583


>gi|222055737|ref|YP_002538099.1| type II and III secretion system protein [Geobacter sp. FRC-32]
 gi|221565026|gb|ACM20998.1| type II and III secretion system protein [Geobacter sp. FRC-32]
          Length = 805

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 25/190 (13%)

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVL 323
            TLA P +   + + A F  G +      ++ST  TS+  +      D GV ++  PT+ 
Sbjct: 423 ETLANPKIRVKNREKAKFNVGTR--VPITTTSTNGTSIGVNVNVQYVDVGVKVNAEPTIQ 480

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------RKADTTVELPSGGTIVLAGLLKDD 377
               + +++  EVS  +     GD  S         R  DT + L  G T ++ GL++DD
Sbjct: 481 LNNEVSIKLSLEVSTILSKDKIGDASSLTTVVTIGTRNLDTVLSLKDGETSIIGGLIQDD 540

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             + K+ + +L  IPI+G L  N+     ++E+ +A TP +V+ V +            E
Sbjct: 541 KSKSKQKVMVLGDIPIIGPLLSNNDNTNRKSELVLAITPRVVRSVTVP-----------E 589

Query: 438 DDAKAFFFNR 447
            DA  F+  R
Sbjct: 590 GDAAGFWSGR 599


>gi|37678398|ref|NP_933007.1| type II secretory pathway, component EpsD [Vibrio vulnificus YJ016]
 gi|37197137|dbj|BAC92978.1| type II secretory pathway, component EpsD [Vibrio vulnificus YJ016]
          Length = 672

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 32/209 (15%)

Query: 239 VSEGGDFS-----VKGV------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
           V+E GD+S     + GV      L    +  ++ A+   +    L+ P++T +    ASF
Sbjct: 414 VTESGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASF 473

Query: 288 TSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPGRIGLRIQTEVS 337
             G     + V   TG+T+ + +D           G+ L   P +     + L I+ EVS
Sbjct: 474 IVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVS 528

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             V+G N      +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IPILG L
Sbjct: 529 N-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHL 587

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426
           F+++    E+  + +      +KP  +RD
Sbjct: 588 FKSTNTQVEKKNLMV-----FIKPTIIRD 611


>gi|270157382|ref|ZP_06186039.1| type IV pilus assembly protein PilQ [Legionella longbeachae D-4968]
 gi|269989407|gb|EEZ95661.1| type IV pilus assembly protein PilQ [Legionella longbeachae D-4968]
          Length = 701

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 5/170 (2%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D    +  L ALE       ++ P L   + Q A   SG +  Y+  S+S+GAT+V    
Sbjct: 515 DNILLDLELSALESEGLAELISSPRLITANQQPALIDSGQEIPYQQ-STSSGATAVAFKK 573

Query: 312 YGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + L   P +    +I   L+I  +++ P    N   +P+   ++  T V + +G TIV
Sbjct: 574 AVLSLKVIPQITPDNKILMDLKINQDLALPNQTYNG--VPAIATKEIQTNVLVSNGQTIV 631

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+ + D  +    +P   ++P++G LF+N++      E+ I  TP ++
Sbjct: 632 LGGIYQQDKSKTITRVPFFGQLPVVGNLFKNTQIGVHNDELLIFITPKII 681


>gi|289164222|ref|YP_003454360.1| type IV pilus (Tfp) assembly protein PilQ [Legionella longbeachae
           NSW150]
 gi|288857395|emb|CBJ11223.1| type IV pilus (Tfp) assembly protein PilQ [Legionella longbeachae
           NSW150]
          Length = 701

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 5/170 (2%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D    +  L ALE       ++ P L   + Q A   SG +  Y+  S+S+GAT+V    
Sbjct: 515 DNILLDLELSALESEGLAELISSPRLITANQQPALIDSGQEIPYQQ-STSSGATAVAFKK 573

Query: 312 YGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + L   P +    +I   L+I  +++ P    N   +P+   ++  T V + +G TIV
Sbjct: 574 AVLSLKVIPQITPDNKILMDLKINQDLALPNQTYNG--VPAIATKEIQTNVLVSNGQTIV 631

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+ + D  +    +P   ++P++G LF+N++      E+ I  TP ++
Sbjct: 632 LGGIYQQDKSKTITRVPFFGQLPVVGNLFKNTQIGVHNDELLIFITPKII 681


>gi|254784514|ref|YP_003071942.1| general secretion pathway protein D [Teredinibacter turnerae T7901]
 gi|237684660|gb|ACR11924.1| general secretion pathway protein D [Teredinibacter turnerae T7901]
          Length = 661

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 19/198 (9%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S+G    V G      F  +++ L+  +    L+ PTL  +    A   S GQ++     
Sbjct: 407 SDGQTLGVAGESGGEDFLVLVNMLQSNSNANILSTPTLLTMDNNEA-MISVGQNVPFVTG 465

Query: 300 SSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           S T A          ++   D G+ L  TP V    ++ L IQ E+S   +   AG    
Sbjct: 466 SFTNAGGNGGTNPFQTIQRQDVGITLTVTPHVNEGDKVILDIQQEISS--VSEEAGSASD 523

Query: 351 Y--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                RK +T V       IVL GL++D++Q+ +  +P+L  IP++G LFR++     ++
Sbjct: 524 VITNQRKVETQVMAKDRSVIVLGGLIRDELQKSENRVPVLGSIPVMGRLFRSNSETLRKS 583

Query: 409 EIFIAATPFLVKPVAMRD 426
            + I      ++P  +RD
Sbjct: 584 NLMI-----FIRPTIIRD 596


>gi|238758713|ref|ZP_04619887.1| Protein transporter HofQ [Yersinia aldovae ATCC 35236]
 gi|238703010|gb|EEP95553.1| Protein transporter HofQ [Yersinia aldovae ATCC 35236]
          Length = 437

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G    Y       G  ++   +  + +  TP +L  G+I L 
Sbjct: 286 IASPRLVTSHQQTASIKQGSDIPYTVSRGKKGVPTIEFKEAVLGMEVTPKILRNGKITLN 345

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P + +  GD  +  + K +  T + +  G TIVL G+ +    Q    +P+L+
Sbjct: 346 LKISQNMPGMAIKRGDSEALLIDKQEIKTQITVNDGETIVLGGIFQQKNNQGINKVPILA 405

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP+LGALF+     +   E+ I  TP L+
Sbjct: 406 DIPLLGALFKQDVRAQTRRELVIFITPRLI 435


>gi|167033463|ref|YP_001668694.1| type II and III secretion system protein [Pseudomonas putida GB-1]
 gi|166859951|gb|ABY98358.1| type II and III secretion system protein [Pseudomonas putida GB-1]
          Length = 621

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321
           I TLA P +  +S +  +    GQ +    ++S  +T       SVT  D G+ L   PT
Sbjct: 401 INTLASPVIR-VSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPT 459

Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           V     + +++  EVS   P+     G +P     R A T++ L  G T VLAGL+++D 
Sbjct: 460 VHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDGETQVLAGLVRNDH 519

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                 IP L  IP LG LF +++ +  ++E+ +A TP +V+
Sbjct: 520 NASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVR 561


>gi|313498582|gb|ADR59948.1| Type II and III secretion system protein [Pseudomonas putida
           BIRD-1]
          Length = 621

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321
           I TLA P +  +S +  +    GQ +    ++S  +T       SVT  D G+ L   PT
Sbjct: 401 INTLASPVIR-VSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPT 459

Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           V     + +++  EVS   P+     G +P     R A T++ L  G T VLAGL+++D 
Sbjct: 460 VHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDGETQVLAGLVRNDH 519

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                 IP L  IP LG LF +++ +  ++E+ +A TP +V+
Sbjct: 520 NASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVR 561


>gi|269968038|ref|ZP_06182076.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 40B]
 gi|269827395|gb|EEZ81691.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 40B]
          Length = 546

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 31/254 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------GGDFS 246
           QV L+  I EV  +   Q G   S   +S G S S   +     +          GG  +
Sbjct: 271 QVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSIVVNRPASTLPPLDAIGTLLGGQTN 330

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG-- 303
           V   +   +F  VL  +     +  L+ P +TA + Q +    G    + T +SS+ G  
Sbjct: 331 V--TISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNG 388

Query: 304 -------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------D 347
                     +T    G+ L  TP + + G + L +     EV+E V  +N G       
Sbjct: 389 ENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQ 448

Query: 348 MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           +P  +  +R++D+ +    G  +V+ GL+K   ++L   +P L  +P LG LFRN     
Sbjct: 449 LPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVT 508

Query: 406 EETEIFIAATPFLV 419
           E+TE+ I   P +V
Sbjct: 509 EKTELVILLKPTVV 522


>gi|261493374|ref|ZP_05989900.1| competence protein E [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496640|ref|ZP_05993020.1| competence protein E [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307843|gb|EEY09166.1| competence protein E [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311018|gb|EEY12195.1| competence protein E [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 437

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 130/288 (45%), Gaps = 36/288 (12%)

Query: 164 SETFLSQSGR---NQYANS-----SSKKVMNLLNIAGE-----DQVTLKVTIAEVRRDIL 210
           S TFLS++G    ++ +NS     S+K + N+ N+  +     +Q+ ++  I  +  + L
Sbjct: 143 SGTFLSENGYIHFDERSNSLIVKDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHL 202

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------GDFSVKG----VLDRFS-- 255
           +++G +  I    +G  K     FGG+    G          +F + G    VL   S  
Sbjct: 203 QELGVRWGIFSRGAGHYK-----FGGRLEGNGLNDVTNNLNVNFPITGGASAVLQVASIN 257

Query: 256 ---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
               +  L ALE+  ++  +A P L   + + AS   G +  Y   ++ + AT V   + 
Sbjct: 258 SRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEA 317

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            + L   P + +  +I L +    + P     +  + +   ++ +T V    G TIVL G
Sbjct: 318 VLGLEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGG 377

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +   Q+ ++ +P+L  IP +  LF  +R    + E+ I  TP++++
Sbjct: 378 IFQHLTQKGEDKVPILGSIPFIKRLFSQTRDKISKRELVIFVTPYILQ 425


>gi|229527442|ref|ZP_04416834.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae 12129(1)]
 gi|229335074|gb|EEO00559.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae 12129(1)]
 gi|327485110|gb|AEA79517.1| Type IV pilus biogenesis protein PilQ [Vibrio cholerae LMA3894-4]
          Length = 571

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q A    G +  Y   SSS+GA++V      + L  T
Sbjct: 409 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 467

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 468 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 527

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 528 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569


>gi|109896995|ref|YP_660250.1| type IV pilus secretin PilQ [Pseudoalteromonas atlantica T6c]
 gi|109699276|gb|ABG39196.1| type IV pilus secretin PilQ [Pseudoalteromonas atlantica T6c]
          Length = 580

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 11/163 (6%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE       +A P +T ++ Q  ++   G  +    S+S+GATSV      + L  T
Sbjct: 413 LSALESENKGEVIASPRIT-VANQREAYIEQGTEIPYVQSTSSGATSVEFKKAVLSLKVT 471

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-- 375
           P +    RI   L +  +     +  + G   +   ++  T V + +G TIVL G+ +  
Sbjct: 472 PHITPDHRIILDLVVTQDTRGDTVNTSTGLAVAIDTQEISTQVLVNNGETIVLGGIFQQT 531

Query: 376 --DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
             DD+ Q    +PLL  IP+LG LF+N++   E+ E+ I  TP
Sbjct: 532 TTDDVSQ----VPLLGDIPVLGHLFKNTQTVNEKRELLIFVTP 570


>gi|22127802|ref|NP_671225.1| putative outer membrane porin HofQ [Yersinia pestis KIM 10]
 gi|45440014|ref|NP_991553.1| putative outer membrane porin HofQ [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108814075|ref|YP_649842.1| putative outer membrane porin HofQ [Yersinia pestis Nepal516]
 gi|150260832|ref|ZP_01917560.1| putative membrane transport protein [Yersinia pestis CA88-4125]
 gi|218927361|ref|YP_002345236.1| putative outer membrane porin HofQ [Yersinia pestis CO92]
 gi|229310101|ref|YP_072232.2| outer membrane porin HofQ [Yersinia pseudotuberculosis IP 32953]
 gi|229358042|ref|YP_653226.2| putative outer membrane porin HofQ [Yersinia pestis Antiqua]
 gi|294502239|ref|YP_003566301.1| putative membrane transport protein [Yersinia pestis Z176003]
 gi|21960932|gb|AAM87476.1|AE013997_11 putative transport portein [Yersinia pestis KIM 10]
 gi|45434869|gb|AAS60430.1| putative membrane transport protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777723|gb|ABG20242.1| membrane transport protein [Yersinia pestis Nepal516]
 gi|115345972|emb|CAL18836.1| putative membrane transport protein [Yersinia pestis CO92]
 gi|149290240|gb|EDM40317.1| putative membrane transport protein [Yersinia pestis CA88-4125]
 gi|262364270|gb|ACY60827.1| putative membrane transport protein [Yersinia pestis D182038]
 gi|294352698|gb|ADE63039.1| putative membrane transport protein [Yersinia pestis Z176003]
          Length = 374

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G    Y        A ++   +  + +  TP +L  G+I L 
Sbjct: 223 IASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNGKIILD 282

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P I +  G+     + K +  T V +  G TIVL G+ +   +Q    +PLL+
Sbjct: 283 LKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQSVNKVPLLA 342

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP+LGA+FR     +   E+ I  TP L+
Sbjct: 343 DIPLLGAMFRQDTQQQSRRELVIFITPKLI 372


>gi|91225619|ref|ZP_01260693.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 12G01]
 gi|91189739|gb|EAS76013.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 12G01]
          Length = 529

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 31/254 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------GGDFS 246
           QV L+  I EV  +   Q G   S   +S G S S   +     +          GG  +
Sbjct: 254 QVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSIVVNRPASTLPPLDAIGTLLGGQTN 313

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG-- 303
           V   +   +F  VL  +     +  L+ P +TA + Q +    G    + T +SS+ G  
Sbjct: 314 V--TISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNG 371

Query: 304 -------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------D 347
                     +T    G+ L  TP + + G + L +     EV+E V  +N G       
Sbjct: 372 ENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQ 431

Query: 348 MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           +P  +  +R++D+ +    G  +V+ GL+K   ++L   +P L  +P LG LFRN     
Sbjct: 432 LPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVT 491

Query: 406 EETEIFIAATPFLV 419
           E+TE+ I   P +V
Sbjct: 492 EKTELVILLKPTVV 505


>gi|229507318|ref|ZP_04396823.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae BX 330286]
 gi|229509758|ref|ZP_04399239.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae B33]
 gi|229513553|ref|ZP_04403017.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TMA 21]
 gi|229516883|ref|ZP_04406329.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC9]
 gi|229521696|ref|ZP_04411114.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TM 11079-80]
 gi|229606824|ref|YP_002877472.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae MJ-1236]
 gi|262158485|ref|ZP_06029600.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae INDRE 91/1]
 gi|262170121|ref|ZP_06037810.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC27]
 gi|229341290|gb|EEO06294.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TM 11079-80]
 gi|229345946|gb|EEO10918.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC9]
 gi|229349430|gb|EEO14386.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TMA 21]
 gi|229353232|gb|EEO18171.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae B33]
 gi|229354823|gb|EEO19744.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae BX 330286]
 gi|229369479|gb|ACQ59902.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae MJ-1236]
 gi|262021529|gb|EEY40241.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC27]
 gi|262029646|gb|EEY48295.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae INDRE 91/1]
          Length = 571

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q A    G +  Y   SSS+GA++V      + L  T
Sbjct: 409 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 467

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 468 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 527

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 528 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569


>gi|291612969|ref|YP_003523126.1| general secretion pathway protein D [Sideroxydans lithotrophicus
           ES-1]
 gi|291583081|gb|ADE10739.1| general secretion pathway protein D [Sideroxydans lithotrophicus
           ES-1]
          Length = 690

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 111/261 (42%), Gaps = 40/261 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGG--------------KF 238
           Q+ ++  I EV  D   + G  +Q+ +  S SG       +FG                 
Sbjct: 350 QIFVEALIVEVTADKAAEFGVQWQNLVGASKSGAHIIGGTNFGSVASGNNIIDAANNLST 409

Query: 239 VSEG-------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG- 290
           V++G       G  ++ GV    +   +  ALE  T    L+EP L  +  + A    G 
Sbjct: 410 VNQGLNIGIVNGTTTIPGVGTVLNLGMLARALETDTNANILSEPNLMTLDNEEAKIVVGQ 469

Query: 291 ------GQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
                 GQ  Y    S+T AT   T    D G+ L   P ++  G + L+I  EVS  + 
Sbjct: 470 NVPFITGQ--YAQTGSATTATPFQTIERKDVGLTLKIKPQIMQGGTVKLQIYQEVSSVLP 527

Query: 342 GVNA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             ++   G + + R  +++  V+      +VL GL++D +  ++   PLL  IPILG+LF
Sbjct: 528 SSSSSTSGLITNKRSIESNILVD--DNQIVVLGGLIQDSVNDVQSKTPLLGDIPILGSLF 585

Query: 399 RNSRFNREETEIFIAATPFLV 419
           R       +T + +   P+++
Sbjct: 586 RYDTRQHTKTNLMVFIRPYIM 606


>gi|254507255|ref|ZP_05119391.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
 gi|219549715|gb|EED26704.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
          Length = 678

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 21/181 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  ++ A+   +    L+ P++T +    ASF  G     + V   TG+T+ + +D    
Sbjct: 448 WTALISAVSTDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 502

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G
Sbjct: 503 TVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVNDG 561

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             IVL GL+ +   + +  +PLL  IP+LG LF+++    E+  + +      +KP  +R
Sbjct: 562 QMIVLGGLIDERALESESKVPLLGDIPVLGHLFKSTSTQVEKKNLMV-----FIKPTIIR 616

Query: 426 D 426
           D
Sbjct: 617 D 617


>gi|153825107|ref|ZP_01977774.1| fimbrial assembly protein [Vibrio cholerae MZO-2]
 gi|149741253|gb|EDM55295.1| fimbrial assembly protein [Vibrio cholerae MZO-2]
          Length = 578

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q A    G +  Y   SSS+GA++V      + L  T
Sbjct: 416 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 474

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 475 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 534

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 535 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576


>gi|254225379|ref|ZP_04918990.1| fimbrial assembly protein [Vibrio cholerae V51]
 gi|125622013|gb|EAZ50336.1| fimbrial assembly protein [Vibrio cholerae V51]
          Length = 578

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q A    G +  Y   SSS+GA++V      + L  T
Sbjct: 416 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 474

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 475 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 534

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 535 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576


>gi|262189810|ref|ZP_06048151.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae CT 5369-93]
 gi|262034306|gb|EEY52705.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae CT 5369-93]
          Length = 571

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q A    G +  Y   SSS+GA++V      + L  T
Sbjct: 409 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 467

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 468 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 527

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 528 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569


>gi|104781918|ref|YP_608416.1| secretion type II protein [Pseudomonas entomophila L48]
 gi|95110905|emb|CAK15621.1| Putative secretion type II protein related to gspD (secretin)
           protein [Pseudomonas entomophila L48]
          Length = 611

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321
           I TLA P +  +S +  +    GQ +    ++S  +T       SVT  D G+ L   PT
Sbjct: 397 INTLASPVIR-VSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPT 455

Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           V     + +++  EVS   P+     G +P     R A T++ L  G T VLAGL+++D 
Sbjct: 456 VHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDGETQVLAGLVRNDH 515

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                 IP L  IP LG LF +++ +  ++E+ +A TP +V+
Sbjct: 516 NASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVR 557


>gi|218708368|ref|YP_002415989.1| MSHA biogenesis protein MshL [Vibrio splendidus LGP32]
 gi|218321387|emb|CAV17337.1| MSHA biogenesis protein MshL [Vibrio splendidus LGP32]
          Length = 554

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 21/186 (11%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA--------- 304
           SFE VL  ++    +  L+ P +TA + Q A    G    Y T +SSS G+         
Sbjct: 345 SFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTELSSSVGSGDNANVAPE 404

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----------PVIGVNAGDMPSYRV 353
             +T    G+ L  TP +   G + L +   V E              G+    +    +
Sbjct: 405 VELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEVKELNLGSTTGIVKLPLAKSSI 464

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R++D+ +    G  +V+ GL+K +   +   +P L  IP LG LFRN+    ++TE+ I 
Sbjct: 465 RESDSVIRAQDGDVVVIGGLMKSNTSDMTSKVPFLGDIPALGHLFRNTSQLTQKTELVIL 524

Query: 414 ATPFLV 419
             P +V
Sbjct: 525 LKPTIV 530


>gi|297581470|ref|ZP_06943393.1| fimbrial assembly protein [Vibrio cholerae RC385]
 gi|297534308|gb|EFH73146.1| fimbrial assembly protein [Vibrio cholerae RC385]
          Length = 578

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q A    G +  Y   SSS+GA++V      + L  T
Sbjct: 416 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 474

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 475 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 534

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 535 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576


>gi|113461255|ref|YP_719324.1| competence protein E [Haemophilus somnus 129PT]
 gi|112823298|gb|ABI25387.1| competence protein E [Haemophilus somnus 129PT]
          Length = 377

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 21/256 (8%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGD------ 244
           +Q+ ++  I  +  + LK++G +  I   T ++   S S AA+ G + ++E  +      
Sbjct: 122 EQIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGSLAAN-GFQHLTEQLNVNFATA 180

Query: 245 --------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                     +  + DR   +  L ALER   +  +A P L   + QSAS   G +  Y 
Sbjct: 181 ATPAGSIALQIAKINDRL-LDLELTALERENNVEIIASPRLLTTNKQSASIKQGTEIPYV 239

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVR 354
                +    V   +  + L  TP +     I L +    + P   +  G  +M S   +
Sbjct: 240 ITGKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNSPGSRITYGQNEMVSIDKQ 299

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T V    G TIVL G+  D I +  + +PLL  IPIL  LF       ++ E+ I  
Sbjct: 300 EINTQVFARDGETIVLGGVFHDTITKGVDKVPLLGDIPILKRLFSRESERHQKRELVIFV 359

Query: 415 TPFLVKPVAMRDLSRP 430
           TP +++     ++ +P
Sbjct: 360 TPRIIRSEQPNEIIKP 375


>gi|15642625|ref|NP_232258.1| fimbrial assembly protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587503|ref|ZP_01677270.1| fimbrial assembly protein [Vibrio cholerae 2740-80]
 gi|121727577|ref|ZP_01680685.1| fimbrial assembly protein [Vibrio cholerae V52]
 gi|147673064|ref|YP_001218123.1| fimbrial assembly protein [Vibrio cholerae O395]
 gi|153217486|ref|ZP_01951197.1| fimbrial assembly protein [Vibrio cholerae 1587]
 gi|153820291|ref|ZP_01972958.1| fimbrial assembly protein [Vibrio cholerae NCTC 8457]
 gi|153821537|ref|ZP_01974204.1| fimbrial assembly protein [Vibrio cholerae B33]
 gi|153830200|ref|ZP_01982867.1| fimbrial assembly protein [Vibrio cholerae 623-39]
 gi|227082746|ref|YP_002811297.1| fimbrial assembly protein [Vibrio cholerae M66-2]
 gi|254851169|ref|ZP_05240519.1| fimbrial assembly protein [Vibrio cholerae MO10]
 gi|298500547|ref|ZP_07010351.1| fimbrial assembly protein [Vibrio cholerae MAK 757]
 gi|9657220|gb|AAF95771.1| fimbrial assembly protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548234|gb|EAX58302.1| fimbrial assembly protein [Vibrio cholerae 2740-80]
 gi|121630068|gb|EAX62473.1| fimbrial assembly protein [Vibrio cholerae V52]
 gi|124113543|gb|EAY32363.1| fimbrial assembly protein [Vibrio cholerae 1587]
 gi|126509166|gb|EAZ71760.1| fimbrial assembly protein [Vibrio cholerae NCTC 8457]
 gi|126520922|gb|EAZ78145.1| fimbrial assembly protein [Vibrio cholerae B33]
 gi|146314947|gb|ABQ19486.1| fimbrial assembly protein [Vibrio cholerae O395]
 gi|148874303|gb|EDL72438.1| fimbrial assembly protein [Vibrio cholerae 623-39]
 gi|227010634|gb|ACP06846.1| fimbrial assembly protein [Vibrio cholerae M66-2]
 gi|227014518|gb|ACP10728.1| fimbrial assembly protein [Vibrio cholerae O395]
 gi|254846874|gb|EET25288.1| fimbrial assembly protein [Vibrio cholerae MO10]
 gi|297540716|gb|EFH76773.1| fimbrial assembly protein [Vibrio cholerae MAK 757]
          Length = 578

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q A    G +  Y   SSS+GA++V      + L  T
Sbjct: 416 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 474

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 475 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 534

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 535 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576


>gi|254285824|ref|ZP_04960786.1| fimbrial assembly protein [Vibrio cholerae AM-19226]
 gi|150424006|gb|EDN15945.1| fimbrial assembly protein [Vibrio cholerae AM-19226]
          Length = 578

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q A    G +  Y   SSS+GA++V      + L  T
Sbjct: 416 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 474

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 475 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 534

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 535 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576


>gi|238792812|ref|ZP_04636443.1| General secretion pathway protein D [Yersinia intermedia ATCC
           29909]
 gi|238727920|gb|EEQ19443.1| General secretion pathway protein D [Yersinia intermedia ATCC
           29909]
          Length = 658

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 14/182 (7%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
           ++  +  AL   +    LA P++  +    A F  G Q +    S+ T +T     S++ 
Sbjct: 422 NWSGLFTALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTSTDRVYNSISR 480

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366
            + GV+L   P +     + L I+ EVS        NA ++ S +  R  +  V + SG 
Sbjct: 481 KNVGVMLKVKPQINKGDSVLLEIRQEVSSIADSSDANANNLGSIFNKRVVNNAVLVKSGE 540

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T+V+ GLL   I ++   IP+L  IP +G LFR  +   E++ + +      +KP  +R+
Sbjct: 541 TVVVGGLLDKKIYKIVNKIPILGDIPFIGGLFRQKKEKVEKSNLIL-----FIKPTILRE 595

Query: 427 LS 428
            S
Sbjct: 596 TS 597


>gi|171910644|ref|ZP_02926114.1| type II/III secretion system protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 816

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 54/233 (23%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----- 297
           G F++ GV     F+ V+ AL +   +  ++ P++T  SGQ A+     + +Y T     
Sbjct: 549 GVFALAGVFTDPQFQVVIRALSQKKGVDLMSAPSVTTRSGQRATVEVIREFIYPTEFDPP 608

Query: 298 ----------------VSSSTGATSVTT--------HDYGVVLHFTPTVLSPG-RIGLRI 332
                           + SST A  VT            GV +   P +   G  I L +
Sbjct: 609 QIPQSVGATTTTGGVGLGSSTAAFPVTPTTPTAFEMRPVGVRMEVDPVIGPDGYTIDLNL 668

Query: 333 QTEVSEPVIGVNAG------------------------DMPSYRVRKADTTVELPSGGTI 368
             EV+E    +N G                        + P +  RK  T V +  G T+
Sbjct: 669 APEVTEFEGFINYGSPINTASTDALGNPTTVTLTENRIEQPVFSTRKVTTAVTVWDGQTV 728

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            + GL+++D+Q +++ +P+L  IPILG LF++   +  +  + I  T  L+ P
Sbjct: 729 AMGGLIREDVQDVEDKVPILGDIPILGRLFQSKAEDHFKRNLMIFVTAKLIDP 781


>gi|83648610|ref|YP_437045.1| type 4 fimbrial biogenesis protein PilQ [Hahella chejuensis KCTC
           2396]
 gi|83636653|gb|ABC32620.1| type 4 fimbrial biogenesis protein PilQ [Hahella chejuensis KCTC
           2396]
          Length = 720

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E       +A+P +     Q+A   SG +  Y+  SSS GATSV+     + L  T
Sbjct: 557 LSAFESDGKGEIVAQPKIVTADRQTARIESGEEIPYQEASSS-GATSVSFKKAVLSLEVT 615

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +    +I + +   +++   GV   ++PS    + +T V + +G TIVL G+   +  
Sbjct: 616 PQITPDDKIIMDLV--INQDSRGVVTANIPSIDTNEIETQVLVGNGETIVLGGIFTSEQS 673

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                 P L  IP LG LFR +    E +E+ +  TP L+
Sbjct: 674 STVTKTPFLGDIPYLGRLFRKTENVNERSELLVFITPKLI 713


>gi|254482717|ref|ZP_05095955.1| type IV pilus secretin PilQ subfamily, putative [marine gamma
           proteobacterium HTCC2148]
 gi|214037076|gb|EEB77745.1| type IV pilus secretin PilQ subfamily, putative [marine gamma
           proteobacterium HTCC2148]
          Length = 692

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 12/211 (5%)

Query: 213 IGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
           IG  +SI    + PS S+      D G   V+    F++    +       + ALE A  
Sbjct: 478 IGLNNSIINGET-PSVSYPGALLVDLG---VASTSGFALGFTSNDLFLTAEISALEAAGQ 533

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
              +++P +     Q A+  SG +  Y+  ++S GATS +  +  + L  TP +    R+
Sbjct: 534 GEVVSQPKVITGDKQQATIKSGTEIPYQEAAAS-GATSTSFKEAVLELEVTPNITPDDRV 592

Query: 329 GLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            L +   Q  V + V     G +PS    +  T V + +G T+VL G+ K +  +    +
Sbjct: 593 MLDLNVKQDSVGDLVPSGQGGFIPSIDTTEITTQVLVGNGETVVLGGVFKTEDLETVNKV 652

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATP 416
           P    +P +GA FR+   N  +TE  I  TP
Sbjct: 653 PFFGDLPYVGAFFRSESRNNTKTETLIFITP 683


>gi|171059772|ref|YP_001792121.1| pilus (MSHA type) biogenesis protein MshL [Leptothrix cholodnii
           SP-6]
 gi|170777217|gb|ACB35356.1| pilus (MSHA type) biogenesis protein MshL [Leptothrix cholodnii
           SP-6]
          Length = 577

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 130/311 (41%), Gaps = 49/311 (15%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-------------AADFGGKFV 239
           E QV L+  I EV      Q G   S  G + G + S              A   GG  +
Sbjct: 250 ERQVMLEAKILEVELGSEAQSGINWSAFGRALGGALSIGLVQPGVTLAGSGALTLGGTSI 309

Query: 240 SEGGDFSVKGVLDRF--------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           + GG+ +       F        +F  +L  LE    ++ L+ P +  ++ Q A    G 
Sbjct: 310 TPGGNLAASSSGAPFYGLAFQSANFAALLSFLESQGKVQVLSSPRIATLNNQKAVLKVGS 369

Query: 292 QHLYKT---------VSSSTGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQ---TEVS 337
             LY T          S+ST   SV    +  G+ L  TP +   G++ L +    + VS
Sbjct: 370 DELYVTGVSSTTTATGSTSTSTPSVVLQPFFSGIALDVTPQIDDQGQVMLHVHPAISTVS 429

Query: 338 EPVIGVNAGDMPSYR-------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           E    +N G + SY+       V + D+ V +  G  + + GL+  + ++ +  +P L  
Sbjct: 430 EKQKNINLGSLGSYQLPLASSTVNETDSIVRVRDGQIVAIGGLMSQEQREERSAVPGLGD 489

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPD-DHYSVEDDAKAFFFNRV 448
           +P++G LFR +     + E+ I     L+KP  +R D   P+ D +      + +  + +
Sbjct: 490 VPLVGGLFRQTSTVMRKRELVI-----LIKPTVIRADGPWPEADTHQPASQLQPWRPDAM 544

Query: 449 NKIYGPKEASE 459
           +++  P+ A++
Sbjct: 545 SQLQLPQAATD 555


>gi|293610078|ref|ZP_06692379.1| predicted protein [Acinetobacter sp. SH024]
 gi|292827310|gb|EFF85674.1| predicted protein [Acinetobacter sp. SH024]
          Length = 758

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 10/175 (5%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-- 310
           R ++  ++ AL+  T    L+ P++  +  + A    G    + T S +T +T +  +  
Sbjct: 477 RKAYGALIQALKTNTKSNLLSTPSIVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTT 536

Query: 311 ----DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPS 364
               D GV L   P +   G + L ++ EVS  +   G  A D+ + + R   T V    
Sbjct: 537 VERKDVGVTLKVVPHIGEGGTVRLEVEQEVSAVQDSRG-QAADLVTSK-RAIKTAVLAEH 594

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G T+VL GL+ DD    ++GIP LS IP +G LFR+   +  +  + +   P +V
Sbjct: 595 GQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649


>gi|254496546|ref|ZP_05109416.1| type II protein secretion LspD [Legionella drancourtii LLAP12]
 gi|254354245|gb|EET12910.1| type II protein secretion LspD [Legionella drancourtii LLAP12]
          Length = 482

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 115/260 (44%), Gaps = 35/260 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKF 238
           K+V+  L+I    Q+ ++  +AE+ ++    +G +      TG +SG    FA       
Sbjct: 184 KRVIAQLDIKPA-QLLIEALVAEINQEDANDLGIEWGSDQQTGKASGFRNGFAII---NS 239

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----H 293
            ++G DF  +           ++AL RA     L+ P++  +  + A    G Q      
Sbjct: 240 QTKGADFQAQ-----------IYALARAHKANILSTPSVVVLDNRQAKILVGKQVSVASS 288

Query: 294 LYKTVSSSTGATS--VTTHD-YGVVLHF--TPTVLSPGRIGLRIQ--TEVSEPVIGVNAG 346
            Y   ++ T A+S   TT D   V LH    P +     I ++I    +  +P +     
Sbjct: 289 NYPNNANGTAASSSPYTTFDRVNVALHLYVRPQITRGNGIQMQIDQGNDTLDPPVAAETS 348

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P++R+    T+V + SG  +VL GL +D +      +P+L  IP +G LF+ +   R+
Sbjct: 349 TTPTFRISSIVTSVHVESGNVVVLGGLTQDSLSNDNNRLPILGDIPGIGRLFKRNVNTRD 408

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +      +KP+ +R+
Sbjct: 409 KRVLMV-----FIKPIILRN 423


>gi|269959419|ref|ZP_06173802.1| general secretion pathway protein D [Vibrio harveyi 1DA3]
 gi|269835856|gb|EEZ89932.1| general secretion pathway protein D [Vibrio harveyi 1DA3]
          Length = 675

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 33/246 (13%)

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           + SG   + AA  GG     G   S+        +  ++ A+   +    L+ P++T + 
Sbjct: 416 TESGDYSTLAAALGG---VNGAAMSIM----MGDWTALITAVSSDSNSNILSSPSITVMD 468

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPGRIGLR 331
              ASF  G     + V   TG+T+ + +D           G+ L   P +     + L 
Sbjct: 469 NGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLN 523

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  I
Sbjct: 524 IEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDI 582

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P++G LF+++    E+  + +      +KP  +RD    D         + + F R  ++
Sbjct: 583 PVIGQLFKSTSTQTEKRNLMV-----FIKPTIIRDGMTADGITQ-----RKYNFIRAEQL 632

Query: 452 YGPKEA 457
           Y  +E 
Sbjct: 633 YKAQEG 638


>gi|156972923|ref|YP_001443830.1| general secretion pathway protein D [Vibrio harveyi ATCC BAA-1116]
 gi|156524517|gb|ABU69603.1| hypothetical protein VIBHAR_00601 [Vibrio harveyi ATCC BAA-1116]
          Length = 658

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 26/212 (12%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  ++ A+   +    L+ P++T +    ASF  G     + V   TG+TS + +D    
Sbjct: 426 WTALITAVSSDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTSGSNNDNPFQ 480

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G
Sbjct: 481 TVDRKEVGIKLKVVPQINEGDSVQLTIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDG 539

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL GL+ +   + +  +PLL  IP++G LF+++    E+  + +      +KP  +R
Sbjct: 540 QMLVLGGLVDERALESESKVPLLGDIPVIGQLFKSTSTQTEKRNLMV-----FIKPTIIR 594

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           D    D         + + F R  ++Y  +E 
Sbjct: 595 DGMTADGITQ-----RKYNFIRAEQLYKAQEG 621


>gi|94500433|ref|ZP_01306965.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
 gi|94427468|gb|EAT12446.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
          Length = 524

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 118/272 (43%), Gaps = 28/272 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S+ ++ ++   ++   QV ++  I EV  +   Q G Q    G +S  S  F        
Sbjct: 232 SAVEQFLDKAQLSLNKQVIIEAKILEVTLNDGYQAGIQWD--GLASSGSTEFTPSLSATT 289

Query: 239 VSEGGDFSVKGVLD-RFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           +    D  + G+    F+   F  V+  L+R   ++ L+ P ++ ++ Q A    G    
Sbjct: 290 LRNPDD--IDGIFSLAFTGSDFTGVIQLLKRQGKVQVLSSPRISTVNNQKAVIKVGTDEF 347

Query: 295 Y-----------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340
           +            T +S+    ++T    G+ L  TP +     + L +   V+E V   
Sbjct: 348 FVTDVSNDTTTTTTTTSTNPEVTLTPFFSGIALDVTPQISENNDVILHVHPSVTEVVERN 407

Query: 341 ----IGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
               +G +  ++P     +R+ D+ +   +G  +V+ GLL+D   +    +P L++IPIL
Sbjct: 408 KVIELGDDIFNLPLAVSSIRETDSIIRARNGQVVVIGGLLQDKQSRTDASVPWLARIPIL 467

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           GALFR S     ++E+ I   P +V     +D
Sbjct: 468 GALFRQSDQESTKSELVILLQPKVVDEDTWQD 499


>gi|194290974|ref|YP_002006881.1| fimbrial type IV assembly protein pilq precursor [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224809|emb|CAQ70820.1| Fimbrial type IV assembly protein pilQ precursor [Cupriavidus
           taiwanensis LMG 19424]
          Length = 710

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +   +   A    G +  Y+  +SS GATSV      + L  T
Sbjct: 547 LSALEADGKGKIISSPRVVTANNIKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVT 605

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++  +G+      +   +   T V + +GGT+V+ G+      
Sbjct: 606 PQITPEGNVLLDV--DVNKDSVGIQTTSGFAIDTKHVQTQVLVENGGTVVIGGIYTQTES 663

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKPVAMR 425
              + +PLL  IP+LG LF+N+   R  TE+ +  TP  L + V++R
Sbjct: 664 TDVDKVPLLGDIPVLGYLFKNNAKVRNRTELLVFLTPRILNESVSLR 710


>gi|218778338|ref|YP_002429656.1| type IV pilus secretin PilQ [Desulfatibacillum alkenivorans AK-01]
 gi|218759722|gb|ACL02188.1| Type IV pilus secretin PilQ [Desulfatibacillum alkenivorans AK-01]
          Length = 844

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 3/179 (1%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G +FS    L   S    L+A E    I+ ++ P +  +  + A+   G  +  K     
Sbjct: 664 GFNFSRLLGLTPLSLNATLNAAESRGEIKIVSSPKIRTLDNKPATIKQGIDYPIKQFDGD 723

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            G T +      + L  TP V    R+ +++  E ++  +G    +  S+  ++ DT + 
Sbjct: 724 -GNTVIVYKAVDLQLEVTPHVTQDRRVSMKMTVEKND--VGAVISEEQSFNTKEVDTELL 780

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  G T+V+ G++K   +   +G P L  +P+LG LF++S  + E  E+ +  TP +V+
Sbjct: 781 VNDGDTVVIGGIIKTTFRDDVDGWPGLIDVPVLGWLFKDSTKSEEREELLVFITPTIVE 839


>gi|328468919|gb|EGF39879.1| putative type III secretion protein YscC [Vibrio parahaemolyticus
           10329]
          Length = 628

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 16/233 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248
           + ++ + ++I ++  + L+Q+G     TG S G ++        D     V+ G   S K
Sbjct: 296 QSRIEVALSIVDISANDLRQLGVDWR-TGVSVGNNRIVDIKTTGDVDNGDVTLGSGQSFK 354

Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            +LD  +   +L     LE   + + ++ PTL       A   +      K V   T A 
Sbjct: 355 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 414

Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              T  YG +L   P ++     +   I L +  E    +      D+PS R  +  T  
Sbjct: 415 EEVT--YGTLLRIVPRIVGDRFATRPEINLSLHLEDGTKIPDGGVDDLPSVRKTEISTLA 472

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412
            +  G ++++ G+ +D++      +PLL  IP LGALFR N+   R    +FI
Sbjct: 473 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFI 525


>gi|186897240|ref|YP_001874352.1| putative outer membrane porin HofQ [Yersinia pseudotuberculosis
           PB1/+]
 gi|186700266|gb|ACC90895.1| type IV pilus secretin PilQ [Yersinia pseudotuberculosis PB1/+]
          Length = 500

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G    Y        A ++   +  + +  TP +L  G+I L 
Sbjct: 349 IASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNGKIILD 408

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P I +  G+     + K +  T V +  G TIVL G+ +   +Q    +PLL+
Sbjct: 409 LKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQSVNKVPLLA 468

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP+LGA+FR     +   E+ I  TP L+
Sbjct: 469 DIPLLGAMFRQDTQQQSRRELVIFITPKLI 498


>gi|154147986|ref|YP_001406614.1| type II and III secretion system protein [Campylobacter hominis
           ATCC BAA-381]
 gi|153803995|gb|ABS51002.1| type II and III secretion system protein [Campylobacter hominis
           ATCC BAA-381]
          Length = 541

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 19/186 (10%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GAT 305
            F+ + +++ LE     + ++ P +T ++ Q A  + G    Y+   ++T       G T
Sbjct: 332 NFNIDGMINFLETKGKTKIISSPKVTTMNNQPAIISVGDVINYRIQENTTSGGQTDAGTT 391

Query: 306 SVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVS--------EPVIGVNAGDMPSYRV 353
           SVT  +Y    G++L+  P +    RI LR+   +S        E    ++    P    
Sbjct: 392 SVTYTNYSTFIGILLNILPEISDDNRIMLRVNPSLSDFKYQADREATAQLDRVMAPDTIQ 451

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           +K  + V +  G T++L GL+  +  +  + +P LS IP++G LF+++      TE+   
Sbjct: 452 KKISSVVWVDDGDTVILGGLIGQNKGKDNKNVPFLSDIPLIGNLFKSTADRLTTTELVFV 511

Query: 414 ATPFLV 419
            TP ++
Sbjct: 512 ITPRII 517


>gi|134093313|ref|YP_001098388.1| putative secretion pathway protein [Herminiimonas arsenicoxydans]
 gi|133737216|emb|CAL60259.1| putative bacterial secretion pathway protein [Herminiimonas
           arsenicoxydans]
          Length = 656

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 14/155 (9%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSST-GATSVTTHD--YGVVLHFTPTVLSPGRI 328
           LA PTL AI G  + F SG       VS+S  G T++   D  +G+ L  TPT L  GR+
Sbjct: 423 LARPTLAAIEGLPSEFFSGTNLSAGLVSTSQQGGTTIVPLDKRFGIKLSVTPTFLPQGRV 482

Query: 329 GLRIQTEVSEPVIGVNAGDMPS---YRVR----KADTTVELPSGGTIVLAGLLKDDIQQL 381
            L+I+ + +     +NA    S   Y++      A+  V +  G T++L+GL +      
Sbjct: 483 QLKIEAQRT----ALNASSETSRVAYQIEIGELTANANVVMNLGETLLLSGLSEKTRTST 538

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           ++G+P L  +P++  LF N + N  +    I  TP
Sbjct: 539 RDGVPGLQDVPVVQYLFSNKKTNDLQRSALILITP 573


>gi|29840703|ref|NP_829809.1| general secretion pathway protein D [Chlamydophila caviae GPIC]
 gi|29835053|gb|AAP05687.1| general secretion pathway protein D [Chlamydophila caviae GPIC]
          Length = 753

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 23/219 (10%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV---LSP 325
           +R  A P++  ++ Q+ +  +  + +   VS+           YG+++   P +      
Sbjct: 537 VRINASPSVVTMN-QTPARIAIVEEMSIAVSADKEKAQYNRAQYGIMIKMLPVINVGEED 595

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G+  + ++T+++    G NA + P    R     V +P G T+++ GL    +   ++GI
Sbjct: 596 GKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVIIGGLRCKHVSDSQDGI 655

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKPVAMRDL-------SRPDDH---- 433
           P L +IP +G LF  +  +  +TE+F+  TP  L  P   ++        SRP ++    
Sbjct: 656 PFLGEIPGVGKLFGMNSTSDSQTEMFVFITPKILDNPAEKKERHEEAVLSSRPGENIEFR 715

Query: 434 ---YSVEDDAKAFF--FNRVNKIYGPKEASEVEGQNYKG 467
              ++ E+ AKA       ++ I  P  AS+VEG  Y G
Sbjct: 716 KALFAGEEAAKAAHKKLELISAIELP--ASQVEGLEYDG 752


>gi|94496443|ref|ZP_01303020.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
 gi|94424189|gb|EAT09213.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
          Length = 726

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 23/197 (11%)

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G     GG     G+     F  +++A++  T    L+ P++  +  Q AS   G Q   
Sbjct: 452 GAIAGLGGSIGSNGI-----FGAIINAVKSDTESNLLSTPSVMTLDNQKASILVGQQ--- 503

Query: 296 KTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
             V  +TG            +V   D G+ L   P + + G I L ++ EVS  V G  +
Sbjct: 504 --VPVTTGEALSQNFDNQFRTVQRQDVGIKLEVKPQINTGGAIKLFLRQEVSS-VAGPVS 560

Query: 346 GDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            D     +  R+ +TTV +  G  + L GLL D+ ++  E IPLLS IP +G LF++   
Sbjct: 561 NDNSDLIINKREIETTVTVDDGEILALGGLLDDNERKTIERIPLLSDIPGIGELFKSRSR 620

Query: 404 NREETEIFIAATPFLVK 420
           +R +T + +   P +++
Sbjct: 621 SRTKTNLMVFIRPTILR 637


>gi|170022485|ref|YP_001718990.1| putative outer membrane porin HofQ [Yersinia pseudotuberculosis
           YPIII]
 gi|169749019|gb|ACA66537.1| type IV pilus secretin PilQ [Yersinia pseudotuberculosis YPIII]
          Length = 460

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G    Y        A ++   +  + +  TP +L  G+I L 
Sbjct: 309 IASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNGKIILD 368

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P I +  G+     + K +  T V +  G TIVL G+ +   +Q    +PLL+
Sbjct: 369 LKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQSVNKVPLLA 428

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP+LGA+FR     +   E+ I  TP L+
Sbjct: 429 DIPLLGAMFRQDTQQQSRRELVIFITPKLI 458


>gi|103485810|ref|YP_615371.1| type II and III secretion system protein [Sphingopyxis alaskensis
           RB2256]
 gi|98975887|gb|ABF52038.1| type II and III secretion system protein [Sphingopyxis alaskensis
           RB2256]
          Length = 732

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 17/194 (8%)

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G F    GD     +     F  +++A++  T    LA P +  +  Q A F  G Q + 
Sbjct: 457 GGFAGFAGDIGKNTI-----FGAIINAVKSDTTSNLLATPHIVTLDNQPAKFLVG-QDVP 510

Query: 296 KTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAG 346
            T     G        +V   + G+ L  TP V   G + + ++ EVS    PV   N+ 
Sbjct: 511 ITTGEQLGDNFENAFRTVQREEVGIKLEVTPQVNGAGEVKMFLRQEVSSVAGPVSSRNSD 570

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            + + R  +   TV+   G  + + GLL DD ++  E IPLLS IP++G LF++    R 
Sbjct: 571 LILNKRAFETVLTVD--DGEILAIGGLLNDDERRTIERIPLLSDIPLIGELFKSRSRTRA 628

Query: 407 ETEIFIAATPFLVK 420
           +T + +   P ++K
Sbjct: 629 KTNLMVFIRPTILK 642


>gi|39996877|ref|NP_952828.1| type II secretion system protein [Geobacter sulfurreducens PCA]
 gi|39983765|gb|AAR35155.1| type II secretion system protein, putative [Geobacter
           sulfurreducens PCA]
 gi|298505890|gb|ADI84613.1| type II secretion system secretin lipoprotein PulQ [Geobacter
           sulfurreducens KN400]
          Length = 822

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 12/182 (6%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGR 327
           L+ P +   + + + FT G +    T SS+     VT +    D GV L+  P +     
Sbjct: 428 LSNPKIRVKNREKSKFTVGTRVPITTTSSTGSVGGVTVNVQYVDVGVKLNAEPVIQLNNE 487

Query: 328 IGLRIQTEVSEPVIG---VNAGDMPSYRV----RKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + +++  EVS  +IG   V +GD  S  V    R  DT + L  G T ++ GL++D   +
Sbjct: 488 VTIKLGVEVSS-IIGEKTVGSGDAISSVVTIGTRNVDTVLNLKDGETSIIGGLIEDTKSK 546

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
            K+ I LL  IP++G+L  +     +++E+ +A TP +V+ V++ +          EDD 
Sbjct: 547 SKQKIWLLGDIPLIGSLLSSHNDRYDKSELVLAITPRIVRAVSVPEADVAAFWSGKEDDP 606

Query: 441 KA 442
            A
Sbjct: 607 TA 608


>gi|59712900|ref|YP_205676.1| pili ecretion protein PilQ [Vibrio fischeri ES114]
 gi|59481001|gb|AAW86788.1| pili ecretion protein PilQ [Vibrio fischeri ES114]
          Length = 582

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 3/150 (2%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           ++ P L   + + A    G +  Y   SSS GATSV+     + L  TP +    R+ L 
Sbjct: 432 ISSPRLITTNKKPAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVTPQITPDNRLVLD 490

Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +      P  V+    G+  +   ++  T V + +G T+VL G+ +  +    E +P+L 
Sbjct: 491 LTVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVDNGETVVLGGIYQHSLSNSVEKVPVLG 550

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            +P+LGALFR S  N  + E+ I  TP +V
Sbjct: 551 DLPLLGALFRRSSENIGKKELLIFVTPKVV 580


>gi|239905312|ref|YP_002952051.1| hypothetical protein DMR_06740 [Desulfovibrio magneticus RS-1]
 gi|239795176|dbj|BAH74165.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 707

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 14/175 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            E  L AL  +  ++ L+ PT+T +   SA   +G    Y  VS+S   T+V      + 
Sbjct: 516 LEAQLTALAESNKVKILSSPTITTMENHSAFVENGMDVPY--VSTSQNGTNVQFAHATLK 573

Query: 316 LHFTPTVLSPGRIGLRI-----QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           L   P V+    + ++I     Q + +  V G      P    R+  + + +  G TIV+
Sbjct: 574 LEMLPHVVDNSNLRMKIVVKDDQVDTTNTVQG-----NPFIYKRETQSNLVVEDGDTIVI 628

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRN--SRFNREETEIFIAATPFLVKPVA 423
           +GL +D +   + G+P LS IP LG  F+   S   REE  IF+  T    KP++
Sbjct: 629 SGLTRDTVGDNEAGVPYLSDIPGLGWAFKTKASSIKREEIYIFVTPTILKEKPIS 683


>gi|54310534|ref|YP_131554.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum SS9]
 gi|46914977|emb|CAG21752.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum SS9]
          Length = 670

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 21/181 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  +++A+   +    L+ P++T +    ASF  G     + V   TG+TS +++D    
Sbjct: 440 WTMLVNAVATDSNSNILSSPSITVLDNSEASFIVG-----EEVPVVTGSTSSSSNDNPFQ 494

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L+ TP +     + L+I+ EVS  V+G +      +  R+ +TTV +  G
Sbjct: 495 TVERKEVGIKLNVTPQINEGDSVQLKIEQEVSS-VLGASGAVDVRFAKRQINTTVLVKDG 553

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             I L GL+ ++ ++ +  IP+L  IP LG LF+++     +T + +      +KP  +R
Sbjct: 554 QMIALGGLISEETKESESKIPILGDIPFLGFLFKSTNTTTAKTNLMV-----FIKPTIIR 608

Query: 426 D 426
           D
Sbjct: 609 D 609


>gi|153947341|ref|YP_001402915.1| outer membrane porin HofQ [Yersinia pseudotuberculosis IP 31758]
 gi|152958836|gb|ABS46297.1| protein transporter HofQ [Yersinia pseudotuberculosis IP 31758]
          Length = 458

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G    Y        A ++   +  + +  TP +L  G+I L 
Sbjct: 307 IASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNGKIILD 366

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P I +  G+     + K +  T V +  G TIVL G+ +   +Q    +PLL+
Sbjct: 367 LKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQSVNKVPLLA 426

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP+LGA+FR     +   E+ I  TP L+
Sbjct: 427 DIPLLGAMFRQDTQQQSRRELVIFITPKLI 456


>gi|145597400|ref|YP_001161475.1| putative outer membrane porin HofQ [Yersinia pestis Pestoides F]
 gi|165928024|ref|ZP_02223856.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|166010419|ref|ZP_02231317.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|108781223|gb|ABG15281.1| putative membrane transport protein [Yersinia pestis Antiqua]
 gi|145209096|gb|ABP38503.1| membrane transport protein [Yersinia pestis Pestoides F]
 gi|165919973|gb|EDR37274.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990509|gb|EDR42810.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           E1979001]
          Length = 450

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G    Y        A ++   +  + +  TP +L  G+I L 
Sbjct: 299 IASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNGKIILD 358

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P I +  G+     + K +  T V +  G TIVL G+ +   +Q    +PLL+
Sbjct: 359 LKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQSVNKVPLLA 418

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP+LGA+FR     +   E+ I  TP L+
Sbjct: 419 DIPLLGAMFRQDTQQQSRRELVIFITPKLI 448


>gi|253998742|ref|YP_003050805.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
 gi|253985421|gb|ACT50278.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
          Length = 675

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 119/264 (45%), Gaps = 22/264 (8%)

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFG---GKFVSEGG 243
           N   + +V L++ + E+ R  L+++G  + + I+ +S  P  +  A  G      V+   
Sbjct: 326 NDLADPEVMLEIEVLEISRSRLQELGIAYPNQISVNSRIPVTTSTAGSGIAVTSTVATDS 385

Query: 244 DFSVKGVLD----RFSFETVLHALERATA--IRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +++G+L+    RF          R T   +  ++ P +   + + A    G +    T
Sbjct: 386 PLTLEGLLNLNSSRFDVSPNPAVNFRKTTGDVNLISNPRIRVRNNEKAKILVGDKVPIIT 445

Query: 298 VSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSY 351
            +S+     + +VT  D G+ L   P +     + ++I  EVS   +     N   + + 
Sbjct: 446 TTSTANVGISENVTYIDVGLKLDVEPRITLDDFVNIKIGLEVSSLGDRTTTRNGATVYTI 505

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R A T + L  G   +LAGL++D+ ++    +P L  IPILG LF N    + +TEI 
Sbjct: 506 GTRNASTLLRLKDGEMQILAGLIQDEERKNASKLPALGDIPILGRLFSNQEDRKNKTEIV 565

Query: 412 IAATPFLVKPVAMRDLSRPDDHYS 435
           +A TP +     + ++ RPD   S
Sbjct: 566 LAITPRI-----LGNIRRPDAEIS 584


>gi|251790891|ref|YP_003005612.1| general secretion pathway protein D [Dickeya zeae Ech1591]
 gi|247539512|gb|ACT08133.1| general secretion pathway protein D [Dickeya zeae Ech1591]
          Length = 696

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 6/172 (3%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
           ++ T+ +ALE       LA P++  +    A F  G      T S +T       +V   
Sbjct: 472 NWGTLFNALESNKRNNILATPSVVTLDNHRAEFNVGQDVPILTGSQTTNNDNIFNTVQRR 531

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             G+     P +   G I L I  E+S       VN+     + +R  +  V++    T+
Sbjct: 532 TIGIKFSILPRINQSGTILLNISQEISSLSDTAQVNSNLGSVFNIRTVNNVVQVQDDETV 591

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           V+ GLL D+ ++    +PLL  IP LG LFR +  N ++  + +   P +++
Sbjct: 592 VIGGLLDDEKKETTNKVPLLGDIPWLGNLFRYTSQNNDKRNLMLFIRPRIIR 643


>gi|126640364|ref|YP_001083348.1| putative general secretion pathway protein [Acinetobacter baumannii
           ATCC 17978]
          Length = 667

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 35/258 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-------------- 240
           QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S              
Sbjct: 303 QVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGSAGAA 362

Query: 241 -------EGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                    G+ +  G+ +    R ++  ++ AL+  T    L+ P++  +  + A    
Sbjct: 363 SAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPSIVTMDNEEAYIVV 422

Query: 290 GGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVI 341
           G    + T S +T +T +  +      D GV L   P +   G + L ++ EVS  +   
Sbjct: 423 GQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRLEVEQEVSAVQDSR 482

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G  A  + S R  K  T V    G T+VL GL+ DD    ++GIP LS IP +G LFR+ 
Sbjct: 483 GQAADLVTSKRAIK--TAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRLFRSD 540

Query: 402 RFNREETEIFIAATPFLV 419
             +  +  + +   P +V
Sbjct: 541 NRSNVKRNLLVFIHPTIV 558


>gi|330815113|ref|YP_004358818.1| secretion type II protein gspD [Burkholderia gladioli BSR3]
 gi|327367506|gb|AEA58862.1| secretion type II protein gspD [Burkholderia gladioli BSR3]
          Length = 847

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 14/144 (9%)

Query: 295 YKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMP 349
           + + ++STG  + SV   D G+ L+  PTV     +G+++  EVS   +G          
Sbjct: 478 FTSTATSTGFLSQSVNYLDIGLTLNVEPTVYLDDTVGIKLALEVSS--LGNTITTTTGTA 535

Query: 350 SYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +Y++  R A T ++L +G T VLAGL+ ++ +     +P L ++P+LG LF  +    + 
Sbjct: 536 AYQIGTRTASTVLQLKNGETDVLAGLIDNEERTSGNKLPGLGQLPVLGRLFGATDDQAKN 595

Query: 408 TEIFIAATPFLVKPVAMRDLSRPD 431
           TEI +A TP LV     R++ RPD
Sbjct: 596 TEIVLAITPHLV-----RNIRRPD 614


>gi|332305113|ref|YP_004432964.1| type IV pilus secretin PilQ [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172442|gb|AEE21696.1| type IV pilus secretin PilQ [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 580

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 11/163 (6%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE       +A P +T ++ Q  ++   G  +    S+S+GATSV      + L  T
Sbjct: 413 LSALESENKGEVIASPRIT-VANQREAYIEQGTEIPYVQSTSSGATSVEFKKAVLSLKVT 471

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-- 375
           P +    RI   L +  +     +  + G   +   ++  T V + +G TIVL G+ +  
Sbjct: 472 PHITPDHRIILDLVVTQDTRGDTVNTSTGLAVAIDTQEISTQVLVNNGETIVLGGIFQQT 531

Query: 376 --DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
             DD+ Q    +PLL  IP+LG LF+N++   E+ E+ I  TP
Sbjct: 532 STDDVSQ----VPLLGDIPVLGHLFKNTQTVNEKRELLIFVTP 570


>gi|313200821|ref|YP_004039479.1| type II and iii secretion system protein [Methylovorus sp. MP688]
 gi|312440137|gb|ADQ84243.1| type II and III secretion system protein [Methylovorus sp. MP688]
          Length = 671

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 119/264 (45%), Gaps = 22/264 (8%)

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFG---GKFVSEGG 243
           N   + +V L++ + E+ R  L+++G  + + I+ +S  P  +  A  G      V+   
Sbjct: 322 NDLADPEVMLEIEVLEISRSRLQELGIAYPNQISVNSRIPVTTSTAGSGIAVTSTVATDS 381

Query: 244 DFSVKGVLD----RFSFETVLHALERATA--IRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +++G+L+    RF          R T   +  ++ P +   + + A    G +    T
Sbjct: 382 PLTLEGLLNLNSSRFDVSPNPAVNFRKTTGDVNLISNPRIRVRNNEKAKILVGDKVPIIT 441

Query: 298 VSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSY 351
            +S+     + +VT  D G+ L   P +     + ++I  EVS   +     N   + + 
Sbjct: 442 TTSTANVGISENVTYIDVGLKLDVEPRITLDDFVNIKIGLEVSSLGDRTTTRNGATVYTI 501

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R A T + L  G   +LAGL++D+ ++    +P L  IPILG LF N    + +TEI 
Sbjct: 502 GTRNASTLLRLKDGEMQILAGLIQDEERKNASKLPALGDIPILGRLFSNQEDRKNKTEIV 561

Query: 412 IAATPFLVKPVAMRDLSRPDDHYS 435
           +A TP +     + ++ RPD   S
Sbjct: 562 LAITPRI-----LGNIRRPDAEIS 580


>gi|300690947|ref|YP_003751942.1| type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum PSI07]
 gi|299078007|emb|CBJ50649.1| putative type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum PSI07]
          Length = 759

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 13/170 (7%)

Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328
           LA P + A + + A    G +  +  T S+STG  + SV   D G+ L   P++     +
Sbjct: 404 LANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEV 463

Query: 329 GLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            ++I  EVS     I   +G + +Y++  R A+T ++L  G T +LAGL+K         
Sbjct: 464 SMKINLEVSSLTNQITTRSGTV-AYQIGTRTANTVLKLHDGETQLLAGLIKTQQTSSAAR 522

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           IP L  IP+LG LF +   N    EI ++ TP +VKP       RPD ++
Sbjct: 523 IPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPS-----HRPDTNF 567


>gi|255067346|ref|ZP_05319201.1| type IV pilus biogeneis protein PilQ [Neisseria sicca ATCC 29256]
 gi|255048497|gb|EET43961.1| type IV pilus biogeneis protein PilQ [Neisseria sicca ATCC 29256]
          Length = 711

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 2/164 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + A E     +T++ P +     + A+  SG +  Y+  SSS GATSV+     + L  T
Sbjct: 543 ISASEATGKSKTISNPRVLTQDRREATIESGTEIPYQEASSS-GATSVSFKKAVLGLTVT 601

Query: 320 PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P V   G+I + ++     PV   V++      + +  +T   +  GGT+++ G+ ++D 
Sbjct: 602 PNVTPDGQIIMTVKITKDTPVDCTVDSLITKCIQTKNLNTQAMVEDGGTLIVGGIYEEDN 661

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
                 +PLL  IP++G LF++     E  E+ I  TP ++  V
Sbjct: 662 SDTINKVPLLGDIPVVGNLFKSRAKKEERRELLIFITPRIMDGV 705


>gi|15606504|ref|NP_213884.1| general secretion pathway protein D [Aquifex aeolicus VF5]
 gi|2983708|gb|AAC07271.1| general secretion pathway protein D [Aquifex aeolicus VF5]
          Length = 625

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 25/267 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-------KSFAADFGGKFV----SEGG 243
           Q+ L  TI E     + + G +  I G+  G +         + A   G FV    S+ G
Sbjct: 335 QLLLTATIIEASAKSILEAGIRWQILGTHGGAAFKGSSLQDVYNAIKSGNFVIGGFSKSG 394

Query: 244 DFSVKGVLDRFSFETVL--HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSS 300
                G +D F  + V     LE+ T    ++ P +  +  Q A    G    + T +  
Sbjct: 395 TTVSIGGIDFFFPDLVFLFSLLEQGTGFNVVSNPKILTLDNQEALIKVGQVVPFPTGIKY 454

Query: 301 STGATSVTTHDY---GVVLHFTPTVLSPGR---IGLRIQT---EVSEPVIGVNAGDMPSY 351
                 + T+DY   G+ L  TP +        I L++Q     ++  V GVN   +P  
Sbjct: 455 DVNGNPIITYDYKDVGLELKITPRITGETVRLVIELKLQEITGYLTNEVSGVNY-TVPIT 513

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+ ++ V + +G T+V+ GL+     +  E IP L  IP++G LFR  R  +++T +F
Sbjct: 514 SNRELNSDVVVENGRTVVIGGLISRKSLKSTEKIPGLGDIPVMGRLFRYDRDEKDKTSLF 573

Query: 412 IAATPFLV-KPVAMRDLSRPDDHYSVE 437
           I  TP+++  P  +  L++  +  + E
Sbjct: 574 IFLTPYVITSPQELAKLTQEHEKLARE 600


>gi|162419434|ref|YP_001608044.1| putative outer membrane porin HofQ [Yersinia pestis Angola]
 gi|165936209|ref|ZP_02224778.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166213214|ref|ZP_02239249.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399124|ref|ZP_02304648.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418934|ref|ZP_02310687.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425621|ref|ZP_02317374.1| protein transporter HofQ [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470614|ref|ZP_02335318.1| protein transporter HofQ [Yersinia pestis FV-1]
 gi|229836369|ref|ZP_04456536.1| predicted fimbrial transporter [Yersinia pestis Pestoides A]
 gi|229840006|ref|ZP_04460165.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842087|ref|ZP_04462242.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904612|ref|ZP_04519723.1| predicted fimbrial transporter [Yersinia pestis Nepal516]
 gi|162352249|gb|ABX86197.1| protein transporter HofQ [Yersinia pestis Angola]
 gi|165915823|gb|EDR34431.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166205512|gb|EDR49992.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962928|gb|EDR58949.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051628|gb|EDR63036.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055311|gb|EDR65105.1| protein transporter HofQ [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229678730|gb|EEO74835.1| predicted fimbrial transporter [Yersinia pestis Nepal516]
 gi|229690397|gb|EEO82451.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696372|gb|EEO86419.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229706437|gb|EEO92444.1| predicted fimbrial transporter [Yersinia pestis Pestoides A]
 gi|320013284|gb|ADV96855.1| putative fimbrial transporter [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 500

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G    Y        A ++   +  + +  TP +L  G+I L 
Sbjct: 349 IASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNGKIILD 408

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P I +  G+     + K +  T V +  G TIVL G+ +   +Q    +PLL+
Sbjct: 409 LKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQSVNKVPLLA 468

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP+LGA+FR     +   E+ I  TP L+
Sbjct: 469 DIPLLGAMFRQDTQQQSRRELVIFITPKLI 498


>gi|254360608|ref|ZP_04976757.1| competence protein E [Mannheimia haemolytica PHL213]
 gi|153091148|gb|EDN73153.1| competence protein E [Mannheimia haemolytica PHL213]
          Length = 437

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 130/288 (45%), Gaps = 36/288 (12%)

Query: 164 SETFLSQSGR---NQYANS-----SSKKVMNLLNIAGE-----DQVTLKVTIAEVRRDIL 210
           S TFLS++G    ++ +NS     S+K + N+ N+  +     +Q+ ++  I  +  + L
Sbjct: 143 SGTFLSENGYIHFDERSNSLIVKDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHL 202

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGK----------------FVSEGGDFSVKGV--LD 252
           +++G +  I    +G  K     FGG+                F   GG  +V  V  ++
Sbjct: 203 QELGVRWGIFSRGAGHYK-----FGGRLEGNGLNNVTNNLNVNFPITGGASAVLQVSSIN 257

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
               +  L ALE+  ++  +A P L   + + AS   G +  Y   ++ + AT V   + 
Sbjct: 258 SRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEA 317

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            + L   P + +  +I L +    + P     +  + +   ++ +T V    G TIVL G
Sbjct: 318 VLGLEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGG 377

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +   Q+ ++ +P+L  IP +  LF  +R    + E+ I  TP++++
Sbjct: 378 IFQHLTQKGEDKVPILGSIPFIKRLFSQTRDKISKRELVIFVTPYILQ 425


>gi|119476010|ref|ZP_01616362.1| type II and III secretion system protein [marine gamma
           proteobacterium HTCC2143]
 gi|119450637|gb|EAW31871.1| type II and III secretion system protein [marine gamma
           proteobacterium HTCC2143]
          Length = 630

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 131/305 (42%), Gaps = 38/305 (12%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN--IAGED----QVTLK 199
           +L  + ++IQ +Q+  + + +  +    N    ++   ++  +   I+  D    QV ++
Sbjct: 281 ILENLAKSIQSNQKDTDSNISIEASKSANALVINAPPSILTTMKSIISQLDIRRAQVMVE 340

Query: 200 VTIAEVRRDILKQIGF------QHSITGS---------SSGPSKSFAADFGGKFVSEGGD 244
             + EVR ++   +G        +SI G+         ++ PS   A  F     S G  
Sbjct: 341 AILVEVRGELASDVGVTWITDPDNSIVGAVNTLGNLPLANAPSDGSALPF-----SAGRG 395

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLYKT 297
           F+  G  +    +  L AL        L+ PT+ AI  + AS   G       GQ     
Sbjct: 396 FTF-GYFNGGDLQAALRALSATQNANILSTPTIVAIDNEEASLLVGQNVPFITGQATSSA 454

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI--QTEVSEPVIGVNAGDMPSYRVRK 355
            S++   T++   D G  L  TP +     I L I  +TE   P I + A D+ + + R+
Sbjct: 455 SSTNDPFTTIERQDIGTSLVVTPRINQGDSITLEIHQKTETIAPSIDI-ASDIVTNK-RE 512

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T   +     +V+ GL+ D+  ++ E +PLL  IP LG+LF +   +  +T + +   
Sbjct: 513 IITKALIRDDQVLVIGGLINDEETEIIEKVPLLGDIPYLGSLFSSKGTSHTKTNLMVFIH 572

Query: 416 PFLVK 420
           P ++K
Sbjct: 573 PTILK 577


>gi|238758913|ref|ZP_04620085.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
 gi|238702870|gb|EEP95415.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
          Length = 641

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 18/203 (8%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
           +++ +  AL   +    LA P++  +    A F  G Q +    S+ T AT     S++ 
Sbjct: 402 NWDGLFSALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 460

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPS-YRVRKADTTVELPSGG 366
              GV+L   P +     + L I+ EVS        N  ++ S +  R  +  V + SG 
Sbjct: 461 QPVGVMLKVKPQINQGDSVLLEIRQEVSSVADSTDTNTNNLGSVFNKRVVNNAVLVRSGE 520

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T+V+ GLL     ++   +P L  IP++G LFR ++   E + + +      +KP  +R+
Sbjct: 521 TVVVGGLLDKKTNRIINKVPFLGDIPLIGGLFRQTKEKVERSNLIL-----FIKPTILRE 575

Query: 427 LSRPDDHYSVEDDAKAFFFNRVN 449
           +    D YS+    K   +N  N
Sbjct: 576 V----DDYSLVTSGKYSEYNVSN 594


>gi|257095715|ref|YP_003169356.1| type IV pilus secretin PilQ [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048239|gb|ACV37427.1| type IV pilus secretin PilQ [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 703

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 1/164 (0%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
             T + ALE     + ++ P +   +   A    G +  Y+  +SS GATSV+     + 
Sbjct: 534 LNTEISALEADGRGKVISSPRVMTANNIEALIEQGVEIPYQQATSS-GATSVSFKKAVLS 592

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +   G + ++++     P   +N G   +   +   T V + +GGT+V+ G+  
Sbjct: 593 LKVTPQITPDGNVTMKVEVNKDTPNTRLNTGAGVAIDNKHVKTEVLVENGGTVVIGGIYT 652

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +++   + IP    +P +G LF++  +  ++ E+ I  TP +V
Sbjct: 653 QEVRNNTQRIPFFGDLPYIGWLFKSREWIDDKQELLIFITPRIV 696


>gi|307131443|ref|YP_003883459.1| general secretion pathway protein D [Dickeya dadantii 3937]
 gi|306528972|gb|ADM98902.1| General secretion pathway protein D [Dickeya dadantii 3937]
          Length = 696

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 6/172 (3%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
           S+ ++ +ALE       LA P++  +    A F  G      T S +T       +V   
Sbjct: 471 SWGSLFNALESNKRNNILATPSVVTLDNHRAEFNVGQDVPILTGSQTTNNDNIFNTVQRR 530

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             G+     P +   G I L I  E+S       VN+     + +R  +  V++    T+
Sbjct: 531 TIGIKFSILPRINQSGTILLNISQEISSLSDTSQVNSNLGSVFNIRTVNNVVQVQDDETV 590

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           V+ GLL D+ ++    +PLL  IP LG LFR +  N ++  + +   P +++
Sbjct: 591 VIGGLLDDEKKETANKVPLLGDIPWLGNLFRYTSQNNDKRNLMLFIRPRIIR 642


>gi|323494567|ref|ZP_08099671.1| general secretion pathway protein D [Vibrio brasiliensis LMG 20546]
 gi|323311170|gb|EGA64330.1| general secretion pathway protein D [Vibrio brasiliensis LMG 20546]
          Length = 674

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 21/181 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  ++ A+   +    L+ P++T +    ASF  G     + V   TG+T+ + +D    
Sbjct: 444 WTALISAVSTDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 498

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G
Sbjct: 499 TVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVEDG 557

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             IVL GL+ +   + +  +PLL  IP LG LF+++    E+  + +      +KP  +R
Sbjct: 558 AMIVLGGLIDERALESESKVPLLGDIPYLGHLFKSTSTQVEKKNLMV-----FIKPTIIR 612

Query: 426 D 426
           D
Sbjct: 613 D 613


>gi|28899478|ref|NP_799083.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839930|ref|ZP_01992597.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ3810]
 gi|28807714|dbj|BAC60967.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746550|gb|EDM57538.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ3810]
 gi|328471385|gb|EGF42280.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus 10329]
          Length = 547

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 23/187 (12%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-GQHLYKTVSSSTG---------A 304
           +FE VL+ +     +  L+ P +TA + Q +    G  Q+    +SS+ G          
Sbjct: 338 NFEAVLNFMSTQGDLNVLSSPRITAANNQKSVIKVGTDQYFVTELSSNAGNGENSNAVPE 397

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------DMPSYR--V 353
             +T    G+ L  TP + + G + L +     EV+E V  +N G       +P  +  +
Sbjct: 398 VELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSI 457

Query: 354 RKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           R++D+ +    G  +V+ GL+K  +++Q+ + +P L  +P LG LFRN+    ++TE+ I
Sbjct: 458 RESDSVIRAKDGDVVVIGGLMKQQNVEQVSK-VPFLGDVPALGHLFRNTSNVTQKTELVI 516

Query: 413 AATPFLV 419
              P +V
Sbjct: 517 LLKPTVV 523


>gi|93006993|ref|YP_581430.1| type II and III secretion system protein [Psychrobacter
           cryohalolentis K5]
 gi|92394671|gb|ABE75946.1| type II and III secretion system protein [Psychrobacter
           cryohalolentis K5]
          Length = 792

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 5/176 (2%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F + G+ D F  +  L A++       ++ P +     Q+A  +SG Q  Y+  S+S GA
Sbjct: 615 FGLLGISD-FMLDLELSAMQADNRGEVISTPKILTSDKQTAKVSSGTQIPYQEASAS-GA 672

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           T+ +  +  + L  TP +   G+IGL++      P I  N   +    +    T V +  
Sbjct: 673 TTTSFKEAALSLEATPNITPDGKIGLQLLITNGTPTIINNQVAIAEDSI---STNVIVED 729

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G TIVL G+ K+      + +P L  +P +G  FR    +  + E+ I  TP L+ 
Sbjct: 730 GQTIVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRKDVRSNTKEELLIFITPKLIN 785


>gi|212709415|ref|ZP_03317543.1| hypothetical protein PROVALCAL_00454 [Providencia alcalifaciens DSM
           30120]
 gi|212687930|gb|EEB47458.1| hypothetical protein PROVALCAL_00454 [Providencia alcalifaciens DSM
           30120]
          Length = 344

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 114/271 (42%), Gaps = 30/271 (11%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           I D+Q    L ET+L+Q    Q                   QV +   I    R  L+ +
Sbjct: 97  ITDTQERFALIETWLTQKDIPQ------------------QQVQITAHIISSSRTALQAL 138

Query: 214 GFQHSITGSSS--GPSKSFAADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALERATAIR 270
           G +  +   S+  G    +      ++ S+ G  ++  + L     E  L+ALE+   + 
Sbjct: 139 GLEWGVHNDSATDGHHSRY-----NRYSSQSGQMALNVLRLGEGLLEMKLNALEKENLLS 193

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            +A P L A     AS   G +  Y  V++S   + V   D  + +  TPT+     + +
Sbjct: 194 IIASPRLVASHKNPASIQQGSEIPY--VTTSEKKSHVQFKDAVLGMEVTPTISRNDNVEM 251

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            ++   + P   +         + K +  T+V + +  T++L G+ +   ++   G+P L
Sbjct: 252 VLKISHNSPDTALTTNPNQHLAINKQEIATSVTIKNNNTLILGGIFQQKQEKTDSGVPFL 311

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
           S+IP+LG LF N   + ++  + +  TP L+
Sbjct: 312 SQIPLLGNLFINKTQHVDKRVLVVFITPKLI 342


>gi|51591323|emb|CAH22989.1| putative outer membrane secretin family protein [Yersinia
           pseudotuberculosis IP 32953]
          Length = 455

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G    Y        A ++   +  + +  TP +L  G+I L 
Sbjct: 304 IASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNGKIILD 363

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P I +  G+     + K +  T V +  G TIVL G+ +   +Q    +PLL+
Sbjct: 364 LKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQSVNKVPLLA 423

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP+LGA+FR     +   E+ I  TP L+
Sbjct: 424 DIPLLGAMFRQDTQQQSRRELVIFITPKLI 453


>gi|328471682|gb|EGF42559.1| general secretion pathway protein D [Vibrio parahaemolyticus 10329]
          Length = 674

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 101/233 (43%), Gaps = 21/233 (9%)

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           E  +D+ K   + +S T        +   D+     + GG       +    +  ++ A+
Sbjct: 392 EEAKDVTKTESYWNSDTNKWENRQYTEEGDYSTLASALGGVNGAAMSIVMGDWTALISAV 451

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YG 313
              +    L+ P++T +    ASF  G     + V   TG+T+ + +D           G
Sbjct: 452 ASDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVG 506

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL
Sbjct: 507 IKLKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGL 565

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + +   + +  +PLL  IP+LG LF+++    E+  + +      +KP  +RD
Sbjct: 566 VDERALESESKVPLLGDIPVLGHLFKSTSTQTEKRNLMV-----FIKPTIIRD 613


>gi|300313469|ref|YP_003777561.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076254|gb|ADJ65653.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum
           seropedicae SmR1]
          Length = 674

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P L     Q+A    G +  Y+  S  +GAT+       + L  T
Sbjct: 512 LSALEAEGRGKIVSSPRLVTADQQAALIEQGEEIPYQQ-SIGSGATATAFKKANLKLEVT 570

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++   G       +   +   T V++  GGT+V+ G+      
Sbjct: 571 PQITPDGNVILDV--DVNKDSRGSATPGGLAINTKHIKTKVQVEDGGTVVIGGIYTQTDN 628

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + +  +PLL +IP+LGALFR+    R++TE+ I  TP +V P
Sbjct: 629 EHETRVPLLGEIPLLGALFRSRNKVRDKTELLIFLTPRIVAP 670


>gi|170717282|ref|YP_001784397.1| type IV pilus secretin PilQ [Haemophilus somnus 2336]
 gi|168825411|gb|ACA30782.1| type IV pilus secretin PilQ [Haemophilus somnus 2336]
          Length = 377

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 110/256 (42%), Gaps = 21/256 (8%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGD------ 244
           +Q+ ++  I  +  + LK++G +  I   T ++   S + AA+ G + ++E  +      
Sbjct: 122 EQIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGNLAAN-GFQHLTEQLNVNFATT 180

Query: 245 --------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                     +  + DR   +  L ALER   +  +A P L   + QSAS   G +  Y 
Sbjct: 181 ATPAGSIALQIAKINDRL-LDLELTALERENNVEIIASPRLLTTNKQSASIKQGTEIPYV 239

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVR 354
                +    V   +  + L  TP +     I L +    + P   +  G  +M S   +
Sbjct: 240 ITGKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNSPGSRITYGQNEMVSIDKQ 299

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T V    G TIVL G+  D I +  + +PLL  IPIL  LF       ++ E+ I  
Sbjct: 300 EINTQVFAQDGETIVLGGVFHDTITKGVDKVPLLGDIPILKRLFSRESERHQKRELVIFV 359

Query: 415 TPFLVKPVAMRDLSRP 430
           TP +++     ++ +P
Sbjct: 360 TPRIIRSEQPNEIIKP 375


>gi|17548364|ref|NP_521704.1| putative GSPD-related protein [Ralstonia solanacearum GMI1000]
 gi|17430610|emb|CAD17294.1| putative gspd-related protein [Ralstonia solanacearum GMI1000]
          Length = 754

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 26/249 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-- 250
           E +V L+V I EV+R  L+ +G Q         PS+           S GG  ++  +  
Sbjct: 329 EPEVMLEVEILEVKRSRLQDLGIQL--------PSQLSLTPLAS---SSGGTLTLDDLRH 377

Query: 251 LDRFSFETVLHALE-----RATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG- 303
           L+       +  L        T    LA P +   + + A    G +     T S++TG 
Sbjct: 378 LNPTRIGATVSPLNVNVNAAVTDTNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGF 437

Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV--RKADT 358
            A +V   D G+ L   PTV     + +RI  EVS+ +  +   +G + +Y +  R A T
Sbjct: 438 VAENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSI-AYEIGTRNATT 496

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + L  G   +LAGL++D+ +     +P L  IP LG LF     N+ ++EI ++ TP +
Sbjct: 497 LLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRV 556

Query: 419 VKPVAMRDL 427
           ++P    +L
Sbjct: 557 IRPAQRPNL 565


>gi|104779612|ref|YP_606110.1| type IV pili biogenesis protein PilQ [Pseudomonas entomophila L48]
 gi|95108599|emb|CAK13293.1| putative type IV pili biogenesis protein PilQ [Pseudomonas
           entomophila L48]
          Length = 412

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E++     +++P +     ++A    G +  Y+  + S GATS++  +  + L  T
Sbjct: 245 LSAMEKSGNGEIISQPRVVTADKETARILKGTEVPYQETTKS-GATSISFREASLSLEVT 303

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G++ + ++    EP   VNA  ++P  R  + +  V + +G TIV+ G+     
Sbjct: 304 PQITPDGKVIMEVRVTKDEPDF-VNALNNVPPIRKNEVNAKVRVTNGETIVIGGVYSTSQ 362

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
             + + +P    +P +G LFR      +++E+ +  TP ++   A+
Sbjct: 363 NNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIMSDQAI 408


>gi|15606033|ref|NP_213410.1| hypothetical protein aq_585 [Aquifex aeolicus VF5]
 gi|2983222|gb|AAC06820.1| hypothetical protein aq_585 [Aquifex aeolicus VF5]
          Length = 705

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 20/243 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           ++ ++  + EV + +L+++G       S +   + +  +   + V+ G   S  G+L  F
Sbjct: 464 KIKIRAKLVEVEKSLLRELGISWRTVFSKAYIPEFWQGETAFRTVTPGQPQS--GLLT-F 520

Query: 255 SF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +F        E  L A E+    + +AE  +  ++G+ A  +SG +     VS S G  +
Sbjct: 521 TFQRNRLNLLEFKLLAYEQEGRAKNVAESYVITVNGEPAVISSGLEFPVTEVSLSGGIAN 580

Query: 307 V--TTHDYGVVLHFTPTVLSPGRIGLRIQ------TEVSE-PVIGVNAGDMPSYRVRKAD 357
           V        +VL  TP VL  G I L +         V E PV       +P +   + D
Sbjct: 581 VEPKYESIPIVLITTPVVLPDGNILLSVYLARRQINSVQEFPVTQTLTQKIPVFSTSRID 640

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             + + +G T+V+ G ++      + G+P L ++P+LG LF+       + E+ I  TP 
Sbjct: 641 VKIPIKNGETVVIGGAVEKSDSITESGVPKLREVPLLGWLFKTQTKQLRDRELLIFITPE 700

Query: 418 LVK 420
           +++
Sbjct: 701 IIE 703


>gi|241668668|ref|ZP_04756246.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877201|ref|ZP_05249911.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843222|gb|EET21636.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 587

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 26/257 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGGKFVS 240
           + V+N ++I   DQV ++  I EV+R    ++GF + +    S PS  +   D       
Sbjct: 334 RNVINEIDIPN-DQVLIEARIVEVQRTSGLELGFNYGV----SHPSGLNVGLDTFRNPTP 388

Query: 241 EGG--DFSVKGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           + G  D SV     R ++        E  + ALE  +    ++ P L  +S    +F   
Sbjct: 389 KPGETDTSVVASTARLAYTLAGGLQLEMEIRALENESLANLVSSPHL-VVSNNETAFIKD 447

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---- 346
           G+ +    ++++GA SV   +  + L  TP +   G I + +   V++  +G ++G    
Sbjct: 448 GKDVPYQQATASGAASVAFQEAVLELQVTPQIAPDGNIVMEVL--VTKNSVGASSGKTST 505

Query: 347 --DMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
             D+P     R+  T V +    T+V+ G+   +  + +  IP L  IP LG LF  ++ 
Sbjct: 506 GEDLPPIINKREVTTKVMVKDSETVVIGGIYTKEQTETRNKIPFLGDIPYLGYLFSYTKI 565

Query: 404 NREETEIFIAATPFLVK 420
              + E+ I  TP +++
Sbjct: 566 EDRDAELLIFITPKIIE 582


>gi|183179752|ref|ZP_02957963.1| fimbrial assembly protein [Vibrio cholerae MZO-3]
 gi|183013163|gb|EDT88463.1| fimbrial assembly protein [Vibrio cholerae MZO-3]
          Length = 377

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q A    G +  Y   SSS+GA++V      + L  T
Sbjct: 215 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 273

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 274 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 333

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 334 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 375


>gi|260774763|ref|ZP_05883666.1| general secretion pathway protein D precursor [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609325|gb|EEX35477.1| general secretion pathway protein D precursor [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 676

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 15/179 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A+   T    L+ P++T +    ASF  G + +     S+ G+       +V  
Sbjct: 444 WTALISAVSSDTNSNILSSPSITVMDNGEASFIVG-EEVPVITGSAAGSNNDNPFQTVDR 502

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGT 367
            + G+ L   P +     + L I+ EVS   P     A D+ S+  R+ +T+V +  G  
Sbjct: 503 KEVGIKLKVVPQINEGNSVQLTIEQEVSNVLPATSNAAVDV-SFAKRQLNTSVMVEDGQM 561

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           IVL GL+ +  Q+ +  +PLL  IP LG LF+++    +++ + +      +KP  +RD
Sbjct: 562 IVLGGLIDERAQESESKVPLLGDIPYLGRLFKSTSSQLQKSNLMV-----FIKPTIIRD 615


>gi|153833899|ref|ZP_01986566.1| general secretion pathway protein D [Vibrio harveyi HY01]
 gi|148869737|gb|EDL68714.1| general secretion pathway protein D [Vibrio harveyi HY01]
          Length = 681

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 26/211 (12%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  ++ A+   +    L+ P++T +    ASF  G     + V   TG+T+ + +D    
Sbjct: 449 WTALISAVSSDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 503

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G
Sbjct: 504 TVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDG 562

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL GL+ +   + +  +PLL  IP++G LF+++    E+  + +      +KP  +R
Sbjct: 563 QMLVLGGLVDERALESESKVPLLGDIPVIGQLFKSTSTQTEKRNLMV-----FIKPTIIR 617

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           D    D         + + F R  ++Y  +E
Sbjct: 618 DGMTADGITQ-----RKYNFIRAEQLYKAQE 643


>gi|170023253|ref|YP_001719758.1| general secretion pathway protein D [Yersinia pseudotuberculosis
           YPIII]
 gi|169749787|gb|ACA67305.1| general secretion pathway protein D [Yersinia pseudotuberculosis
           YPIII]
          Length = 640

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 18/190 (9%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
           +++ +L AL        LA P++  +    A F  G Q +   +S+ T  T     S++ 
Sbjct: 409 NWDVLLSALSTNKNNNILATPSIVTLDNMEAEFNVG-QEVPVLISTQTTTTDKVYNSISR 467

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366
              GV+L   P +     + L I+ EVS       VN  ++ S +  R  +  V + SG 
Sbjct: 468 QSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVFNKRVVNNAVLVKSGE 527

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T+V+ GLL      +   +P L  +P++G LFR ++   E++ + +      +KP  +R+
Sbjct: 528 TVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLIL-----FIKPTILRE 582

Query: 427 LSRPDDHYSV 436
                D YSV
Sbjct: 583 ----SDDYSV 588


>gi|332139655|ref|YP_004425393.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshL (pilus type IV) [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549677|gb|AEA96395.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshL (pilus type IV) [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 582

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 20/191 (10%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTT 309
           + R  F+ V++ L+    ++ L+ P +T  + Q A    G    + T VS+S   ++ +T
Sbjct: 372 ISRGDFDGVINMLQTQGDVQMLSNPRVTVTNNQKAVIKVGQDEYFVTDVSTSEDQSTTST 431

Query: 310 HD----------YGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD------MPS 350
            +           G+ L  TP +   G + L +    TE +E    +  GD      +  
Sbjct: 432 ENENDIELTPFFSGIALDVTPQIDRSGSVILHVHPSVTETAEQTKVIQVGDQQILLPLAQ 491

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++DT +    G  +V+ GL++    + +   PLL  IP +G  F+N    + + E+
Sbjct: 492 SNIRESDTVIRARDGEIVVIGGLMETVTSEQESKTPLLGDIPFIGNAFKNKAKTQSKREL 551

Query: 411 FIAATPFLVKP 421
            I   P +V+P
Sbjct: 552 VILIRPSVVQP 562


>gi|90022332|ref|YP_528159.1| peptidase M41, FtsH [Saccharophagus degradans 2-40]
 gi|89951932|gb|ABD81947.1| type II and III secretion system protein [Saccharophagus degradans
           2-40]
          Length = 727

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 7/178 (3%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G F+   +   F     L ALE +     +++P +     Q AS  SG +  Y+  S+S
Sbjct: 545 AGAFTWNVISSNFLLGMELSALENSGYAEIVSQPKVITGDKQKASIESGTEIPYQEESAS 604

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADT 358
            G T+ +  +  + L  TP +    R+ + +   Q  +S   I  N+G +P   + + +T
Sbjct: 605 -GGTTTSFKEAVLKLEVTPQITPDNRVIMDLVINQDSISS--IDANSG-IPVIDITQLET 660

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            V +  G TIVL G+   +    +  +PLL  IP +G LFRN   + ++ EI I  TP
Sbjct: 661 QVLVADGETIVLGGIYTTNTFTGETKVPLLGDIPFVGKLFRNDFKSEDKREILIFITP 718


>gi|17548695|ref|NP_522035.1| putative general secretion pathway GSPD-related protein [Ralstonia
           solanacearum GMI1000]
 gi|17430943|emb|CAD17625.1| putative general secretion pathway gspd-related protein [Ralstonia
           solanacearum GMI1000]
          Length = 698

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 13/170 (7%)

Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328
           LA P + A + + A    G +  +  T S+STG  + SV   D G+ L   P++     +
Sbjct: 343 LANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEV 402

Query: 329 GLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            ++I  EVS     I   +G + +Y++  R A+T ++L  G T +LAGL+K         
Sbjct: 403 SMKINLEVSSLTNQITTRSGTV-AYQIGTRTANTVLKLHDGETQLLAGLIKTQQTSSAAR 461

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           IP L  IP+LG LF +   N    EI ++ TP +VKP       RPD ++
Sbjct: 462 IPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPS-----HRPDTNF 506


>gi|308094739|ref|ZP_05891643.2| msha biogenesis protein mshl [Vibrio parahaemolyticus AN-5034]
 gi|308095427|ref|ZP_05905786.2| msha biogenesis protein mshl [Vibrio parahaemolyticus Peru-466]
 gi|308125606|ref|ZP_05776206.2| msha biogenesis protein mshl [Vibrio parahaemolyticus K5030]
 gi|308126551|ref|ZP_05910862.2| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ4037]
 gi|308087223|gb|EFO36918.1| msha biogenesis protein mshl [Vibrio parahaemolyticus Peru-466]
 gi|308093091|gb|EFO42786.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AN-5034]
 gi|308109580|gb|EFO47120.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ4037]
 gi|308111201|gb|EFO48741.1| msha biogenesis protein mshl [Vibrio parahaemolyticus K5030]
          Length = 530

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 23/187 (12%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-GQHLYKTVSSSTG---------A 304
           +FE VL+ +     +  L+ P +TA + Q +    G  Q+    +SS+ G          
Sbjct: 321 NFEAVLNFMSTQGDLNVLSSPRITAANNQKSVIKVGTDQYFVTELSSNAGNGENSNAVPE 380

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------DMPSYR--V 353
             +T    G+ L  TP + + G + L +     EV+E V  +N G       +P  +  +
Sbjct: 381 VELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSI 440

Query: 354 RKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           R++D+ +    G  +V+ GL+K  +++Q+ + +P L  +P LG LFRN+    ++TE+ I
Sbjct: 441 RESDSVIRAKDGDVVVIGGLMKQQNVEQVSK-VPFLGDVPALGHLFRNTSNVTQKTELVI 499

Query: 413 AATPFLV 419
              P +V
Sbjct: 500 LLKPTVV 506


>gi|77361631|ref|YP_341206.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876542|emb|CAI87764.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 696

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 3/159 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE       +A P +TA + Q A    G +  Y   S+S+GAT+V+     + L  T
Sbjct: 534 LTALEEENKGEIIASPRITAANQQKARIEQGTEIPY-VESASSGATTVSFKKAVLSLEVT 592

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    ++   L I  +     +    G   +   ++ +T V + +G T+VL G+ +  
Sbjct: 593 PHITPDNKVILNLIITQDTRGDTVQTGTGPAVAIDTQQIETQVLVENGQTVVLGGIFQQQ 652

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           I    + +PLL  IP +G LF+++    E+ E+ I  TP
Sbjct: 653 IINSTKKVPLLGDIPYIGRLFKSTSEFNEKRELLIFVTP 691


>gi|320106632|ref|YP_004182222.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
 gi|319925153|gb|ADV82228.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
          Length = 819

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 79/186 (42%), Gaps = 33/186 (17%)

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTH------DYGVVLHFT 319
           R L  P L +  GQ A    G +    T S     STG  SV         D GV +  T
Sbjct: 433 RVLQNPRLRSTDGQRAQLKIGQRIPVATGSYNSGVSTGVASVGVQTQFQYIDIGVQIDLT 492

Query: 320 PTVLSPGRIGLRIQTEVS------------EPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           PTV     I L+++ EVS            EPVIG           R ++  ++L  G  
Sbjct: 493 PTVHQNHEISLKMKIEVSTHANDETISGVVEPVIGQ----------RISEQVIQLKEGEP 542

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRD 426
            +L+G+L         G P LS+IP+LG +F N   +R  TEI     P +V+  V  R 
Sbjct: 543 SILSGILTKTESDSLGGTPGLSQIPLLGRIFSNKTRDRASTEIVFVLVPHIVRESVLTRM 602

Query: 427 LSRPDD 432
            +RP D
Sbjct: 603 NTRPID 608


>gi|325576567|ref|ZP_08147285.1| type IV pilus secretin PilQ [Haemophilus parainfluenzae ATCC 33392]
 gi|325161130|gb|EGC73245.1| type IV pilus secretin PilQ [Haemophilus parainfluenzae ATCC 33392]
          Length = 460

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 2/177 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   +      SV   +  + L  T
Sbjct: 276 LTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDTQSVEFREAVLGLEVT 335

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   +     ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 336 PHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 395

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           I +  + +PLL  IP +  LF       ++ E+ I  TP ++K     +++R + H+
Sbjct: 396 ITKGVDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMARKEKHF 452


>gi|323496092|ref|ZP_08101152.1| MSHA biogenesis protein MshL [Vibrio sinaloensis DSM 21326]
 gi|323318836|gb|EGA71787.1| MSHA biogenesis protein MshL [Vibrio sinaloensis DSM 21326]
          Length = 544

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 107/262 (40%), Gaps = 40/262 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF-------- 245
           QV L+  I EV      Q G   S   SS+G + S      G  V +G GD         
Sbjct: 262 QVILEAKILEVTLSDGYQQGINWSKAFSSNGTNYSIGQ---GSIVKDGNGDILPAVLPGL 318

Query: 246 ---------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                        V+   SF+ VL  +     +  L+ P +TA + Q A    G    Y 
Sbjct: 319 DAIGTLLGGQTNLVISSGSFDAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYV 378

Query: 297 T-VSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGV 343
           T +SS  G+           +T    G+ L  TP +   G + L +     +V E V  +
Sbjct: 379 TDLSSVVGSGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVDEQVKEI 438

Query: 344 NAGD----MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             GD    +P  R  +R++D+ +    G  +V+ GL+K +       +P L  +P LG L
Sbjct: 439 GFGDTRITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTIDQVSKVPFLGDVPALGHL 498

Query: 398 FRNSRFNREETEIFIAATPFLV 419
           FRN+    ++TE+ I   P +V
Sbjct: 499 FRNTTKLTQKTELVILLKPTVV 520


>gi|261250571|ref|ZP_05943146.1| type II secretory pathway component EpsD [Vibrio orientalis CIP
           102891]
 gi|260939140|gb|EEX95127.1| type II secretory pathway component EpsD [Vibrio orientalis CIP
           102891]
          Length = 654

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 41/246 (16%)

Query: 215 FQHSITGSSSG------------PSKSFAADFGGKFV-----SEGGDFS--------VKG 249
            Q+S TG+S G             + +   D  GKF+     +E GD+S        V G
Sbjct: 355 IQYSNTGASVGQVMVGLEEAKDTTTTTAVYDSDGKFLRNETTTEEGDYSTLASALGSVNG 414

Query: 250 V---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT- 305
               +    +  ++ A+   +    L+ P++T +    ASF  G + +     S++G+  
Sbjct: 415 AALSIAMGDWTALISAVSTDSNSNILSSPSITVMDNGEASFIVG-EEVPVLTGSTSGSNN 473

Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
                +V   + G+ L   P +     + L I+ EVS  V+G N      +  R+ +T+V
Sbjct: 474 ENPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSV 532

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G  IVL GL+ +   + +  +P+L  IP LG LF+++    E+  + +      +K
Sbjct: 533 MVEDGQMIVLGGLIDERALESESKVPILGDIPYLGHLFKSTSTQVEKKNLMV-----FIK 587

Query: 421 PVAMRD 426
           P  +RD
Sbjct: 588 PTIIRD 593


>gi|261884996|ref|ZP_06009035.1| type II and III secretion system protein [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 203

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 17/178 (9%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDY--- 312
           VL+ LE     + ++ P +  ++  +A  T G    Y+    +T     T+V+   Y   
Sbjct: 4   VLNFLETKGRTKVVSSPKIMTMNNHNALITVGDNINYRVQEDTTNTNTQTAVSNTTYTQY 63

Query: 313 ----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG------VNAGDM-PSYRVRKADTTVE 361
               G++L+  P V   GRI LRI   +S    G       N  ++ P    +K  T V+
Sbjct: 64  SIFIGILLNLLPEVSDDGRIMLRINPSLSSFKYGDDNRRQANIREIAPDTLQKKLSTVVQ 123

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + SG TI+L GL+ +   +    +P+L  IP+ G LF++++ +   TE+    TP ++
Sbjct: 124 VNSGDTIILGGLIGETKGKDNTSVPVLGDIPLFGNLFKSTKDSVSTTELIFIITPKVI 181


>gi|196233070|ref|ZP_03131918.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
 gi|196222877|gb|EDY17399.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
          Length = 874

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 21/220 (9%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           S   ++ AL      R +  P++   + + A   SG Q +    S  +   + TT + G+
Sbjct: 618 SLTAIVTALMNTNRFRVVTRPSVFTRNNKKAIIASG-QEIPVPTSIQSALNAGTTVNTGL 676

Query: 315 V-------------LHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADT 358
           V             L   P + +   + L +  ++ + V G   ++  D+P+   R   T
Sbjct: 677 VTQSSVQFKRVALQLEVVPLINADREVSLDVLQKIDQ-VSGSTRIDNNDIPNIATRYVKT 735

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP-- 416
           +V +P+ GT+VL GL++  + +++ GIPLLS IP LG LF ++   +  TE+ I   P  
Sbjct: 736 SVTVPNEGTVVLGGLIQQSMNKVRSGIPLLSSIPGLGYLFSSTTKEKIRTELVILIRPEV 795

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFF-NRVNKIYGPK 455
               P A +   R  +  S++ D +A    N V K   P+
Sbjct: 796 SWAPPEAAQIRERAQEVLSMDPDLEASLSKNGVRKAEAPE 835


>gi|229524610|ref|ZP_04414015.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae bv. albensis
           VL426]
 gi|229338191|gb|EEO03208.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae bv. albensis
           VL426]
          Length = 571

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + Q A    G +  Y   SSS+GA +V      + L  T
Sbjct: 409 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGAPTVAFKKAVLSLKVT 467

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 468 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 527

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 528 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569


>gi|149911025|ref|ZP_01899654.1| putative MSHA biogenesis protein MshL [Moritella sp. PE36]
 gi|149805928|gb|EDM65914.1| putative MSHA biogenesis protein MshL [Moritella sp. PE36]
          Length = 532

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 105/256 (41%), Gaps = 36/256 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---------AADFGGKFVSEGGDF 245
           QV L+V I EV  +   + G   ++  S+     SF          A   G F   G DF
Sbjct: 265 QVLLEVKIMEVTLNDGYKQGIDWNVNNSNVAADSSFNFSITDITDLASGAGVFTLAGNDF 324

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA- 304
           S             +  L+    +  L+ P +TA++ Q A    G    + T  SST + 
Sbjct: 325 SA-----------AISLLKTQGDVNVLSSPRVTALNNQKAVIKVGSDEYFVTGYSSTKST 373

Query: 305 ----------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSY 351
                       +T    G+ L  TP + S G + L +     EV++    V   ++P  
Sbjct: 374 SSDDDSIEQDVELTPFFSGIALDVTPQIDSDGGVLLHVHPSIIEVTDSNKIVAGIELPLA 433

Query: 352 R--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +  VR+ DT V+  SG  IV+ GL+K   + L   +P L  IP LG LF     + ++TE
Sbjct: 434 KSDVRETDTVVKAKSGEIIVIGGLMKTANKDLVSKVPFLGDIPWLGELFTYRSQSVQKTE 493

Query: 410 IFIAATPFLVKPVAMR 425
           + I   P +V     R
Sbjct: 494 LIILIKPIVVDQNTWR 509


>gi|332532305|ref|ZP_08408185.1| type IV pilus biogenesis protein PilQ [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038172|gb|EGI74618.1| type IV pilus biogenesis protein PilQ [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 701

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE       +A P + A + Q A    G +  Y T S+S+GAT+V+     + L  T
Sbjct: 539 LSALEEENKGEIIASPRIIAANQQKARIEQGTEIPY-TESASSGATTVSFKKAVLSLEVT 597

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    ++   L I  +     +    G+  S   ++  T V + +G T+VL G+ +  
Sbjct: 598 PHITPDNKVILDLIITQDTRGDTVQTGTGEAVSIDTQEIQTQVLVENGQTVVLGGIFQQQ 657

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           I      +P+L  IP +G LF+ +    E+ E+ I  TP
Sbjct: 658 IINTTSKVPILGDIPYVGRLFKTTSEFNEKRELLIFVTP 696


>gi|239994918|ref|ZP_04715442.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshL (pilus type IV) [Alteromonas macleodii ATCC 27126]
          Length = 582

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 20/191 (10%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTT 309
           + R  F+ V++ L+    ++ L+ P +T  + Q A    G    + T VS+S   ++  T
Sbjct: 372 ISRGDFDGVINMLQTQGDVQMLSNPRVTVTNNQKAVIKVGQDEYFVTDVSTSEDQSATQT 431

Query: 310 HD----------YGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD------MPS 350
            +           G+ L  TP +   G + L +    TE +E    +  GD      +  
Sbjct: 432 ENENDIELTPFFSGIALDVTPQIDRSGSVILHVHPSVTETAEQTKVIQVGDQQILLPLAQ 491

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++DT +    G  +V+ GL++    + +   PLL  IP +G  F+N    + + E+
Sbjct: 492 SNIRESDTVIRARDGEIVVIGGLMETVTSEQESKTPLLGDIPFIGNAFKNKAKTQSKREL 551

Query: 411 FIAATPFLVKP 421
            I   P +V+P
Sbjct: 552 VILIRPSVVQP 562


>gi|153840376|ref|ZP_01993043.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AQ3810]
 gi|149745960|gb|EDM57090.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AQ3810]
          Length = 552

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 101/233 (43%), Gaps = 21/233 (9%)

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           E  +D+ K   + +S T        +   D+     + GG       +    +  ++ A+
Sbjct: 270 EEAKDVTKTESYWNSDTNKWENRQYTEEGDYSTLASALGGVNGAAMSIVMGDWTALISAV 329

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YG 313
              +    L+ P++T +    ASF  G     + V   TG+T+ + +D           G
Sbjct: 330 ASDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVG 384

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL
Sbjct: 385 IKLKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGL 443

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + +   + +  +PLL  IP+LG LF+++    E+  + +      +KP  +RD
Sbjct: 444 VDERALESESKVPLLGDIPVLGHLFKSTSTQTEKRNLMV-----FIKPTIIRD 491


>gi|294012342|ref|YP_003545802.1| type II secretory pathway component PulD [Sphingobium japonicum
           UT26S]
 gi|292675672|dbj|BAI97190.1| type II secretory pathway component PulD [Sphingobium japonicum
           UT26S]
          Length = 726

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 20/178 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------- 305
           F  +++A++  T    L+ P++  +  Q AS   G Q     V  +TG            
Sbjct: 473 FGAIINAVKSDTDSNILSTPSVMTLDNQKASILVGQQ-----VPVTTGEALSQNFDNQFR 527

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVEL 362
           +V   D G+ L   P + + G I L ++ EVS    PV   N+ D+   + R+ +TTV +
Sbjct: 528 TVQRQDVGIKLEVKPQINTGGAIKLFLKQEVSSVAGPVSNNNS-DLIINK-REIETTVTV 585

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             G  + L GLL D+ ++  E IPLLS IP LG LF++   +R +T + +   P +++
Sbjct: 586 DDGEILALGGLLDDNERKTIERIPLLSDIPGLGELFKSRSKSRTKTNLMVFIRPTILR 643


>gi|152985006|ref|YP_001347404.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
 gi|150960164|gb|ABR82189.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
          Length = 658

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 111/250 (44%), Gaps = 30/250 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG----------- 243
           QV ++  I E+  DI   +G Q +I     G +++    FG   +S G            
Sbjct: 360 QVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTRT---SFGNTGLSIGTLLQALKDDKIP 416

Query: 244 ----DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQ 292
               D +V G+    SF  ++ AL   +    L+ P+L  +  Q A    G       G 
Sbjct: 417 NPLPDGAVVGI-GSSSFGALVTALSANSKSNLLSTPSLLTLDNQKAEILVGQNVPFNTGS 475

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMP 349
           +   +  SS   T+V   D GV L  TP +     + L I+ E+S     V  V+  D+ 
Sbjct: 476 YTTNSEGSSNPFTTVERKDIGVNLKVTPHINDGAALRLEIEQEISSIAPNVQQVSDTDII 535

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           + + R   +T+   +G  IVL GL++DD+ Q +  +PLL  IP LG LFR+++    +  
Sbjct: 536 TNK-RSIKSTILAENGQVIVLGGLIQDDVVQAESKVPLLGDIPWLGRLFRSTKDTHTKRN 594

Query: 410 IFIAATPFLV 419
           + +   P +V
Sbjct: 595 LMVFLRPTVV 604


>gi|3978475|gb|AAC83352.1| outer membrane secretion protein Q [Pseudomonas alcaligenes]
          Length = 649

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 8/144 (5%)

Query: 282 GQSASFTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
           GQ+  F +G    Y T +S      T++   D GV L  TP +     + L ++ E+S  
Sbjct: 459 GQNVPFQTGS---YTTDASGANNPFTTIEREDIGVTLKVTPHINDGATLRLEVEQEISSI 515

Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGG-TIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
            P  GVNA  +     +++  +V L   G  IVL GL++DD+      +PLL  IP++G 
Sbjct: 516 APSAGVNAQAVDLVTNKRSIKSVILADDGQVIVLGGLIQDDVTSTDSKVPLLGDIPLIGR 575

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           LFR+++    +  + +   P +V+
Sbjct: 576 LFRSTKDTHVKRNLMVFLRPTIVR 599


>gi|237809367|ref|YP_002893807.1| type IV pilus secretin PilQ [Tolumonas auensis DSM 9187]
 gi|237501628|gb|ACQ94221.1| type IV pilus secretin PilQ [Tolumonas auensis DSM 9187]
          Length = 702

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 4/178 (2%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE       ++ P +T  + + A    G +  Y   S+S+GA
Sbjct: 522 FQVAKLADGSLLDLELSALENENKAEIISSPRVTTANQKEALIEQGYEIPYNE-SASSGA 580

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
           T+++     + L  TP +     + L +   Q ++ + V   N G   +   +   T V 
Sbjct: 581 TTISFKKAVLSLKVTPQITPDNNVILDLHVTQDDIYQDVNTGNGGTAKALSTQAITTQVL 640

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +G T+VL G+    I++    IP+L  IP +G LFRN+     + E+ I  TP +V
Sbjct: 641 VKNGETLVLGGIYNRSIKKTVNKIPVLGDIPGVGVLFRNTVNTNTKKELLIFVTPKIV 698


>gi|294101775|ref|YP_003553633.1| type II and III secretion system protein [Aminobacterium
           colombiense DSM 12261]
 gi|293616755|gb|ADE56909.1| type II and III secretion system protein [Aminobacterium
           colombiense DSM 12261]
          Length = 556

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 18/226 (7%)

Query: 202 IAEVRRDILKQIGFQHSITGSSS--GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           +A     I K    ++   G+    G S S++    G+ ++     S+ G + +   + +
Sbjct: 337 VASCLESIYKHWMLEYKGRGTPGRIGYSDSYSEGMFGEDIT-----SLSGTVKKL--DAL 389

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           +  LE+      LAEP++  I G  A      ++ Y +     G  +  + + G  L  T
Sbjct: 390 ISTLEKEEKGHILAEPSVITIEGTKARIQLVQKYPYVSTRDEAGNPTYVSEEVGPQLEIT 449

Query: 320 PTVLSPGR-----IGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           P V   GR     I L I+T EV     G      P    R+ +T V +  G   V+ GL
Sbjct: 450 PFV---GRDEIITIKLVIKTGEVVSWREGARGETYPETSTRQVETQVRVRDGEPFVIGGL 506

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            K+  +  +   PLL  IPILG+LF      +E+ E+ I   P ++
Sbjct: 507 FKELKRGNQYKFPLLGDIPILGSLFSTQYTEKEKNEVIIIVIPHIL 552


>gi|269118877|ref|YP_003307054.1| type II and III secretion system protein [Sebaldella termitidis
           ATCC 33386]
 gi|268612755|gb|ACZ07123.1| type II and III secretion system protein [Sebaldella termitidis
           ATCC 33386]
          Length = 368

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 111/233 (47%), Gaps = 27/233 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ +K TI +   ++ +++G   S   ++       A+DF   F+   G+ S+ G+L   
Sbjct: 139 QIQIKATIIDTSDNLFERLGVDFSAGKNNDNK----ASDFLSSFID--GNLSLSGLLKTG 192

Query: 255 -SFETV-LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
            +F  + + AL+    I+  A P L  + G     + G   + + V      +++   +Y
Sbjct: 193 GNFLGINIDALKENGDIKIEAMPVLLILEG-----SEGELRVTEEVIVGEKKSTIKDTEY 247

Query: 313 --------GVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTV 360
                   GVV    P +   G    I L I +E+S   +  N   D  + +  K ++ V
Sbjct: 248 IEPVFAEAGVVFKIKPEIRGFGDSQEIILYIDSEISNFKLSSNFNADQGAKQKNKINSIV 307

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEG-IPLLSKIPILGALFRNSRFNREETEIFI 412
              +G ++ + GL K ++Q+  E  +P+LSKIPILG+LFR  R N+E  +I+I
Sbjct: 308 SFKNGTSVFIGGL-KQNVQKDSEKRVPVLSKIPILGSLFRYKRKNKEIRDIYI 359


>gi|254228550|ref|ZP_04921975.1| general secretion pathway protein D [Vibrio sp. Ex25]
 gi|262392666|ref|YP_003284520.1| general secretion pathway protein D/type II secretion outermembrane
           pore forming protein (PulD) [Vibrio sp. Ex25]
 gi|151938932|gb|EDN57765.1| general secretion pathway protein D [Vibrio sp. Ex25]
 gi|262336260|gb|ACY50055.1| general secretion pathway protein D/type II secretion outermembrane
           pore forming protein (PulD) [Vibrio sp. Ex25]
          Length = 672

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPT 321
           L+ P++T +    ASF  G     + V   TG+T+ + +D           G+ L   P 
Sbjct: 458 LSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQ 512

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + 
Sbjct: 513 INEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALES 571

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +  +PLL  IP+LG LF+++    E+  + +      +KP  +RD
Sbjct: 572 ESKVPLLGDIPVLGHLFKSTSTQTEKRNLMV-----FIKPTIIRD 611


>gi|269792653|ref|YP_003317557.1| type II and III secretion system protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100288|gb|ACZ19275.1| type II and III secretion system protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 589

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + ALE A   +TLA P++  + G+ A  +      Y +     G  + +    G  + F 
Sbjct: 411 IKALENADKGKTLASPSVVVVDGKEAKISLTENIKYISARDQAGNPTYSEEKVGPTMEFL 470

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           PTV   G + +++  +  E    +  G   ++P    R+  + V +  G   V+ GL +D
Sbjct: 471 PTVGRDGFVTIKMTLKTGEVTKYIKGGLGEEVPQTSTREVTSYVRVRDGEPFVVGGLFRD 530

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +  IP+LS IP++G LF++    +E  E+ +   P ++
Sbjct: 531 SNTFSEYRIPVLSDIPLIGELFKSRTKKKERGEVAMIVIPHIL 573


>gi|207725091|ref|YP_002255488.1| gspd-related protein [Ralstonia solanacearum MolK2]
 gi|206590321|emb|CAQ37282.1| gspd-related protein [Ralstonia solanacearum MolK2]
          Length = 754

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 26/249 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-- 250
           E +V L+V I EV+R  L+ +G Q         PS+           S GG  ++  +  
Sbjct: 329 EPEVMLEVEILEVKRSRLQDLGIQL--------PSQLSLTPLAS---SSGGTLTLDDLRH 377

Query: 251 LDRFSFETVLHALE-----RATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG- 303
           L+       +  L        T    LA P +   + + A    G +     T S++TG 
Sbjct: 378 LNPTRIGATVSPLNVNVNAAVTDTNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGF 437

Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV--RKADT 358
            A +V   D G+ L   PTV     + +RI  EVS+ +  +   +G + +Y +  R A T
Sbjct: 438 VAENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSI-AYEIGTRNATT 496

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + L  G   +LAGL++D+ +     +P L  IP LG LF     N+ ++EI ++ TP +
Sbjct: 497 LLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRV 556

Query: 419 VKPVAMRDL 427
           ++P    +L
Sbjct: 557 IRPAQRPNL 565


>gi|27364325|ref|NP_759853.1| general secretion pathway protein D [Vibrio vulnificus CMCP6]
 gi|320157717|ref|YP_004190096.1| general secretion pathway protein D [Vibrio vulnificus MO6-24/O]
 gi|27360443|gb|AAO09380.1| general secretion pathway protein D [Vibrio vulnificus CMCP6]
 gi|319933029|gb|ADV87893.1| general secretion pathway protein D [Vibrio vulnificus MO6-24/O]
          Length = 673

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 21/181 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  ++ A+   +    L+ P++T +    ASF  G     + V   TG+T+ + +D    
Sbjct: 443 WTALISAVSSDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 497

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G
Sbjct: 498 TVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDG 556

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL GL+ +   + +  +PLL  IP+LG LF+++    E+  + +      +KP  +R
Sbjct: 557 QMLVLGGLIDERALESESKVPLLGDIPVLGHLFKSTNTQVEKKNLMV-----FIKPTIIR 611

Query: 426 D 426
           D
Sbjct: 612 D 612


>gi|157372484|ref|YP_001480473.1| general secretion pathway protein D [Serratia proteamaculans 568]
 gi|157324248|gb|ABV43345.1| general secretion pathway protein D [Serratia proteamaculans 568]
          Length = 660

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 20/200 (10%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
           ++  +L A+   +    LA P++  +  + A F+ G      T S +T +     +V   
Sbjct: 427 NWAGLLTAISNQSQNNILATPSIMTLDNEDAEFSVGQDVPILTGSQTTNSDNVFNTVARK 486

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYRVRKADTTVELPSG 365
             G+ L   P +     + L+I+ EVS       V   N G   ++ +R  + TV + SG
Sbjct: 487 TVGIKLKVKPQINKGQSVLLQIEQEVSSVAENSSVDKDNLG--ATFNIRTVNNTVLVESG 544

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T+V+ GLL       K  +P L +IP+LGALFR++     +  + +   P ++      
Sbjct: 545 ETVVVGGLLDKSQSDSKSAVPFLERIPLLGALFRSTSHKESKRNLILFIRPTVI------ 598

Query: 426 DLSRPDDHYSVEDDAKAFFF 445
              R  + Y+ E   KA  F
Sbjct: 599 ---RSTEEYAQESMRKAARF 615


>gi|330954627|gb|EGH54887.1| general secretion pathway protein D [Pseudomonas syringae Cit 7]
          Length = 356

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G         +    S+ T  +SV 
Sbjct: 152 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTDTTLSSVE 211

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS      N  D    P    R   T V   SG
Sbjct: 212 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNANNNDANGNPRISTRSVATQVAAQSG 271

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF N+  +++ TE+ +  TP ++
Sbjct: 272 ETVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVI 325


>gi|91224969|ref|ZP_01260228.1| general secretion pathway protein D precursor [Vibrio alginolyticus
           12G01]
 gi|91190215|gb|EAS76485.1| general secretion pathway protein D precursor [Vibrio alginolyticus
           12G01]
          Length = 672

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 32/209 (15%)

Query: 239 VSEGGDFS--------VKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASF 287
           V+E GD+S        V G         +  ++ A+   +    L+ P++T +    ASF
Sbjct: 414 VTESGDYSTLASALSGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSITVMDNGEASF 473

Query: 288 TSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPGRIGLRIQTEVS 337
             G     + V   TG+T+ + +D           G+ L   P +     + L I+ EVS
Sbjct: 474 IVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVS 528

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             V+G N      +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG L
Sbjct: 529 N-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHL 587

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426
           F+++    E+  + +      +KP  +RD
Sbjct: 588 FKSTSTQTEKRNLMV-----FIKPTIIRD 611


>gi|85860506|ref|YP_462708.1| type IV secretion [Syntrophus aciditrophicus SB]
 gi|85723597|gb|ABC78540.1| type IV secretion [Syntrophus aciditrophicus SB]
          Length = 590

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 13/187 (6%)

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
           K VLD       + ALE  ++ + ++ P +T + G +A    G +  Y T     G   V
Sbjct: 411 KAVLD-----VQIAALESTSSGKIISTPKVTTMDGVTAKIKQGEEIPYTTYDDK-GYPRV 464

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPS 364
              +  + L  TP++   GRI ++I            G+   ++P  +  + D+ V +  
Sbjct: 465 NFKEAVLKLEVTPSITPDGRISMQINATNDRGDYAKAGILGDNVPIIK-NEVDSKVVVED 523

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL---VKP 421
           G TIV+ G+ K        G+P LS+IP+LG LF++   +R   ++ I  TP +   V+P
Sbjct: 524 GTTIVIGGVSKTTDDTSTSGVPWLSRIPVLGWLFKSENTDRTRKQLLIFVTPKIIPDVEP 583

Query: 422 VAMRDLS 428
            A   LS
Sbjct: 584 GAAAGLS 590


>gi|293390985|ref|ZP_06635319.1| protein transport protein HofQ [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951519|gb|EFE01638.1| protein transport protein HofQ [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 469

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 27/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +Q+ ++  I  +  + LK++G +  I   +       A   GG     G D  V  +   
Sbjct: 194 EQIAIEARIVTINDESLKELGVRWGIFNPTEN-----AHRIGGSLAGNGFDNLVNQLNVN 248

Query: 254 FSFETV--------------------LHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           F   T                     L ALER   +  +A P L   + +SAS   G + 
Sbjct: 249 FPTTTTPAGSVALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEL 308

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSY 351
            Y  V+  +G+ SV   +  + L  TP +    +I L +    + P   +    G++ S 
Sbjct: 309 PYILVNEKSGSQSVEFREAVLGLEVTPHISQDKQILLDLIVSQNSPGSRVAYGLGEVVSI 368

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++ +T V    G TIVL G+  D I +  + +P+L  IP +  LF       ++ E+ 
Sbjct: 369 DKQEINTQVFAKDGETIVLGGVFSDTITKGTDKVPVLGDIPGIKHLFSKESERHQKRELV 428

Query: 412 IAATPFLVK 420
           I  TP +++
Sbjct: 429 IFVTPHILR 437


>gi|300696689|ref|YP_003747350.1| secretion type II protein related to gspD (secretin) protein
           [Ralstonia solanacearum CFBP2957]
 gi|299073413|emb|CBJ52927.1| secretion type II protein related to gspD (secretin) protein
           [Ralstonia solanacearum CFBP2957]
          Length = 754

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 26/249 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-- 250
           E +V L+V I EV+R  L+ +G Q         PS+           S GG  ++  +  
Sbjct: 329 EPEVMLEVEILEVKRSRLQDLGIQL--------PSQLSLTPLAS---SSGGTLTLDDLRH 377

Query: 251 LDRFSFETVLHALE-----RATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG- 303
           L+       +  L        T    LA P +   + + A    G +     T S++TG 
Sbjct: 378 LNPTRIGATVSPLNINVNAAVTDTNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGF 437

Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV--RKADT 358
            A +V   D G+ L   PTV     + +RI  EVS+ +  +   +G + +Y +  R A T
Sbjct: 438 VAENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSI-AYEIGTRNATT 496

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + L  G   +LAGL++D+ +     +P L  IP LG LF     N+ ++EI ++ TP +
Sbjct: 497 LLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRV 556

Query: 419 VKPVAMRDL 427
           ++P    +L
Sbjct: 557 IRPAQRPNL 565


>gi|260770770|ref|ZP_05879699.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio furnissii CIP 102972]
 gi|260614007|gb|EEX39197.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio furnissii CIP 102972]
 gi|315178810|gb|ADT85724.1| general secretion pathway protein D [Vibrio furnissii NCTC 11218]
          Length = 675

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  ++ A+   +    L+ P++T +    ASF  G     + V   TG+TS + +D    
Sbjct: 445 WTALISAVSSNSNTNILSSPSITVMDNGEASFIVG-----EEVPVITGSTSSSNNDNPFQ 499

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G
Sbjct: 500 TVDRKEVGIKLKVVPQINEGDSVQLAIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDG 558

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +VL GL+ +   + +  +PLL  IPI+G LF ++    E+  + +   P +++
Sbjct: 559 QMLVLGGLIDERTAESESKVPLLGDIPIIGHLFSSTSTQVEKKNLMVFIKPTIIR 613


>gi|94985829|ref|YP_605193.1| type II and III secretion system protein [Deinococcus geothermalis
           DSM 11300]
 gi|94556110|gb|ABF46024.1| type IV pilus assembly protein PilQ [Deinococcus geothermalis DSM
           11300]
          Length = 673

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 146/346 (42%), Gaps = 53/346 (15%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVV----LHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           A LE TL R +  +N   + +++  V     +G   T+          +T  S + + Q 
Sbjct: 335 ATLEGTLARDLTPANGNAQTLANVPVNATDANGNPITVTVPTTGSSAGQTANSNAQQPQQ 394

Query: 177 ANSSSK-------KVMNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
           A  +S        K  N L + G  +QVT    +      ++ QI  Q  I   +   ++
Sbjct: 395 AAPNSNGATIIADKRTNTLIVRGTPEQVTQIAELVPQLDQVVPQINVQVRIQEITETAAR 454

Query: 229 SFAAD----FGGKFVSEG-----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           +   D    FGG  VS G       F     L  F+    L ALE     + + +  +T 
Sbjct: 455 TLGLDWKVNFGGFNVSVGSGGLGATFDPTQSLVGFNIFPTLQALENQGLTKRVYDGNITM 514

Query: 280 ISGQ----SASFT------------SGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPTV 322
            SGQ    SA+ T            SGG  L   + SS+G       DYG+ L F  P V
Sbjct: 515 QSGQRSLGSATNTQNASANAAASIKSGG-RLEINIPSSSGNIE-KQIDYGLNLDFFDPQV 572

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------RKADTTVELPSGGTIVLAGLL 374
              G + LR++ +V+       AG +P+  V         +A +T+   SG T++++GLL
Sbjct: 573 APDGTVTLRVRGQVNN-----IAGTLPTTSVPNLLNFTNSEAQSTITFKSGQTVLMSGLL 627

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                +  +G+P LS +P++GA F      RE++++ +  T  +VK
Sbjct: 628 GTTESRTNDGVPFLSSLPVIGAAFGKQTTRREQSQLLVIITGSVVK 673


>gi|149925604|ref|ZP_01913868.1| type II and III secretion system protein [Limnobacter sp. MED105]
 gi|149825721|gb|EDM84929.1| type II and III secretion system protein [Limnobacter sp. MED105]
          Length = 807

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 31/217 (14%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295
           G  ++ G+    +   +  ALE       L+ P +  +  + A    G       GQ   
Sbjct: 506 GQVNIPGIGTISNLGFLARALESKANANILSTPNILTLDNEEAKIVIGQNVPFITGQF-- 563

Query: 296 KTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            T S   GAT     ++   D G+ L   P V   G + L I  EVS  V   N   + +
Sbjct: 564 -TNSGGNGATVNPFQTIERQDVGLTLRVKPQVSEGGIVKLGIFQEVSSVVDSTNVSGIIT 622

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            + R  ++ V + +G  IVL GL++D +   +E +P L  +P+LG  FR     R++T +
Sbjct: 623 NK-RSIESNVLVETGNIIVLGGLVEDRVTGNEEKVPGLGDVPVLGQFFRYDNRRRQKTNL 681

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
            +      ++PV +R+          ED A++   NR
Sbjct: 682 MV-----FLRPVVVRN----------EDQAQSIVTNR 703


>gi|84394142|ref|ZP_00992875.1| MSHA biogenesis protein MshL [Vibrio splendidus 12B01]
 gi|84375244|gb|EAP92158.1| MSHA biogenesis protein MshL [Vibrio splendidus 12B01]
          Length = 492

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 21/186 (11%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA--------- 304
           SFE VL  ++    +  L+ P +TA + Q A    G    Y T +SSS G+         
Sbjct: 283 SFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTDLSSSVGSGDDANVAPE 342

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAG--DMPSYR--V 353
             +T    G+ L  TP +   G + L +   V E         +G   G   +P  +  +
Sbjct: 343 VELTPFFSGISLDVTPQIDDKGSVFLHVHPAVIEVEEEVKELNLGSTTGIVQLPLAKSSI 402

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R++D+ +    G  +V+ GL+K +   +   +P L  IP LG LFRN+    ++TE+ I 
Sbjct: 403 RESDSVIRAKDGDVVVIGGLMKSNTSDVTSKVPFLGDIPALGHLFRNTNQLTQKTELVIL 462

Query: 414 ATPFLV 419
             P +V
Sbjct: 463 LKPTIV 468


>gi|95931255|ref|ZP_01313974.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132691|gb|EAT14371.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
          Length = 665

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 18/187 (9%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGA------TS 306
           +F  ++   +  T +  L+ P L     + A    G     +   ++ STG+       S
Sbjct: 457 AFSALIKLSKDDTNVNILSAPRLLTSDNEEAEIVVGRNVPIITSRLTDSTGSDSLAQSVS 516

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVEL 362
           V   D  + L FTP +     + L +  E ++    V  GD+    P++  RK   TV  
Sbjct: 517 VERKDVALTLRFTPQITEGELVRLNVYQETTDLTDSV--GDVNSVGPTFTTRKISNTVLA 574

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE-ETEIFIAATPFLVKP 421
             G T+VL GL+  + Q+    +PLL  IP+LG LF+ S+ N+E +T + +  TP ++  
Sbjct: 575 RDGQTVVLGGLISTNQQETISKVPLLGDIPLLGWLFK-SKDNKEVKTNLLVFITPTIISD 633

Query: 422 VAMRDLS 428
             M DLS
Sbjct: 634 --MEDLS 638


>gi|261867159|ref|YP_003255081.1| protein transport protein HofQ [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412491|gb|ACX81862.1| protein transport protein HofQ [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 469

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 27/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +Q+ ++  I  +  + LK++G +  I   +       A   GG     G D  V  +   
Sbjct: 194 EQIAIEARIVTINDESLKELGVRWGIFSPTDN-----AHRIGGSLAGNGFDNLVNQLNVN 248

Query: 254 FSFETV--------------------LHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           F   T                     L ALER   +  +A P L   + +SAS   G + 
Sbjct: 249 FPTTTTPAGSVALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEL 308

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSY 351
            Y  V+  +G+ SV   +  + L  TP +    +I L +    + P   +    G++ S 
Sbjct: 309 PYILVNEKSGSQSVEFREAVLGLEVTPHISQDKQILLDLIVSQNSPGSRVAYGLGEVVSI 368

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++ +T V    G TIVL G+  D I +  + +P+L  IP +  LF       ++ E+ 
Sbjct: 369 DKQEINTQVFAKDGETIVLGGVFSDTITKGTDKVPVLGDIPGIKHLFSKESERHQKRELV 428

Query: 412 IAATPFLVK 420
           I  TP +++
Sbjct: 429 IFVTPHILR 437


>gi|254490277|ref|ZP_05103466.1| type IV pilus secretin PilQ subfamily, putative [Methylophaga
           thiooxidans DMS010]
 gi|224464410|gb|EEF80670.1| type IV pilus secretin PilQ subfamily, putative [Methylophaga
           thiooxydans DMS010]
          Length = 672

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 9/168 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            E  L A++       ++ P +   + Q A+   G +  Y+  +SS GAT+V+  +  + 
Sbjct: 506 LELELSAMQAEGKGEVISSPRVITSNQQQATIEQGTEIPYQEATSS-GATNVSFKEAVLK 564

Query: 316 LHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L  TP +    RI + ++    EV E  +GV     PS   R   T V + +G T+VL G
Sbjct: 565 LDVTPQITPDDRIVMDLEVSKDEVGEVFLGV-----PSIDTRSVKTQVLVDNGETVVLGG 619

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +       E +P    +P +G LF+N+     + E+ +  TP +VK
Sbjct: 620 IYEQSTNDNVERVPFFGDLPYVGFLFKNTFKEDRKRELLVFVTPKIVK 667


>gi|66046370|ref|YP_236211.1| type II and III secretion system protein:NolW-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257077|gb|AAY38173.1| type II and III secretion system protein:NolW-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 776

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 8/173 (4%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G         +    ++ T  +SV 
Sbjct: 573 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNTGTTLSSVE 632

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGG 366
               GV+L   P +   G + + IQ +VS+       +A   P    R   T V   SG 
Sbjct: 633 YVQTGVILDVVPRINPGGLVYMDIQQQVSDADSSGTTDANGNPRISTRSVATQVAAQSGQ 692

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           T++L GL+K D  +    +P L +IP L  LF N+  +++ TE+ +  TP ++
Sbjct: 693 TVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVI 745


>gi|301169135|emb|CBW28732.1| predicted fimbrial transporter [Haemophilus influenzae 10810]
          Length = 445

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IPI+  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPIIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|269964603|ref|ZP_06178842.1| General secretion pathway protein D [Vibrio alginolyticus 40B]
 gi|269830730|gb|EEZ84950.1| General secretion pathway protein D [Vibrio alginolyticus 40B]
          Length = 286

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 21/181 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  ++ A+   +    L+ P++T +    ASF  G     + V   TG+T+ + +D    
Sbjct: 56  WTALISAVASDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 110

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G
Sbjct: 111 TVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDG 169

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL GL+ +   + +  +PLL  IP+LG LF+++    E+  + +      +KP  +R
Sbjct: 170 QMLVLGGLVDERALESESKVPLLGDIPVLGHLFKSTSTQTEKRNLMV-----FIKPTIIR 224

Query: 426 D 426
           D
Sbjct: 225 D 225


>gi|332702049|ref|ZP_08422137.1| type II and III secretion system protein [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552198|gb|EGJ49242.1| type II and III secretion system protein [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 524

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 112/279 (40%), Gaps = 35/279 (12%)

Query: 175 QYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
           Q A   S++++ L+    +   Q+ LK  I E  +D  + +G Q      +SG   +  A
Sbjct: 226 QAAPEESRRILRLVEQLDKPRAQILLKAHIVETTKDTARDLGVQWGGVYQTSGSGNNLFA 285

Query: 233 DFGG--------KFVSEG----------------GDFSVKGVLDRFSF--------ETVL 260
             GG        K+V +                  D +  G      F        E  L
Sbjct: 286 IPGGTNGRLEDNKWVYDSTLGTGIGGQGFGVNLPADLAAGGTQLGLMFGKLGGSILELQL 345

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            AL+    +  L+ P+++ +  Q A FT  G+ +    +   G  +V   D  + L  TP
Sbjct: 346 SALQENGRVNILSSPSISTLDNQMA-FTENGERVPYVATDEEGDLNVKFEDAVLRLEITP 404

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            V+   ++ L+I     E          P    ++ +T + +  G T+V++GL +D    
Sbjct: 405 HVIDREQLKLKILVRKDEVDTSRTVQGNPFIIKKRTETVLVVDDGETVVISGLSRDFDSS 464

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             + +P L  IP+LG LF+ +    E  E+ I  TP ++
Sbjct: 465 RDQKVPWLGDIPLLGRLFQRNVDKAEMEEVLIFITPHVL 503


>gi|293416407|ref|ZP_06659046.1| general secretion pathway protein D [Escherichia coli B185]
 gi|291431763|gb|EFF04746.1| general secretion pathway protein D [Escherichia coli B185]
          Length = 686

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ GA       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGANNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGHLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|319775638|ref|YP_004138126.1| competence protein E [Haemophilus influenzae F3047]
 gi|317450229|emb|CBY86445.1| competence protein E [Haemophilus influenzae F3047]
          Length = 445

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|261253997|ref|ZP_05946570.1| MSHA biogenesis protein MshL [Vibrio orientalis CIP 102891]
 gi|260937388|gb|EEX93377.1| MSHA biogenesis protein MshL [Vibrio orientalis CIP 102891]
          Length = 552

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 19/189 (10%)

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA---- 304
           V+   SFE VL  +     +  L+ P +TA + Q A    G    Y T +SS  G+    
Sbjct: 340 VISSGSFEAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGSGDNS 399

Query: 305 -----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD----MPSYR 352
                  +T    G+ L  TP +   G + L +     +V E V  +  G+    +P  R
Sbjct: 400 EPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVDEQVKEIGYGNTSITLPLAR 459

Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++D+ +    G  +V+ GL+K +       +P L  IP LG LFRN+    ++TE+
Sbjct: 460 SSIRESDSVIRAQDGDVVVIGGLMKSNTIDQVSKVPFLGDIPALGHLFRNTTKLTQKTEL 519

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 520 VILLKPSVV 528


>gi|73542913|ref|YP_297433.1| type II and III secretion system protein:NolW-like [Ralstonia
           eutropha JMP134]
 gi|72120326|gb|AAZ62589.1| type II and III secretion system protein:NolW-like [Ralstonia
           eutropha JMP134]
          Length = 804

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 11/169 (6%)

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATSVTT------HDYGVVLHF 318
           ++  L+ P L  +  + A    G Q++  T  S   + GA SVT        D G+ L  
Sbjct: 538 SVNLLSTPNLITLENEEAKILIG-QNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRV 596

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            P +   G + ++I  E S  V G +     P+  VR  +T V +  G  IVL GL++D 
Sbjct: 597 RPQITDGGLVKMQIFQESSSVVPGTLTQVQGPTTNVRSIETNVLVDDGQIIVLGGLIEDS 656

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
                + +PLL  IP +G LFR    NR +T + +   P++++     D
Sbjct: 657 YGDGVQKVPLLGDIPWIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAAD 705


>gi|83749448|ref|ZP_00946440.1| General secretion pathway protein D [Ralstonia solanacearum UW551]
 gi|207738427|ref|YP_002256820.1| gspd-related protein [Ralstonia solanacearum IPO1609]
 gi|83723885|gb|EAP71071.1| General secretion pathway protein D [Ralstonia solanacearum UW551]
 gi|206591793|emb|CAQ58699.1| gspd-related protein [Ralstonia solanacearum IPO1609]
          Length = 657

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 26/249 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-- 250
           E +V L+V I EV+R  L+ +G Q         PS+           S GG  ++  +  
Sbjct: 329 EPEVMLEVEILEVKRSRLQDLGIQL--------PSQLSLTPLAS---SSGGTLTLDDLRH 377

Query: 251 LDRFSFETVLHALE-----RATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG- 303
           L+       +  L        T    LA P +   + + A    G +     T S++TG 
Sbjct: 378 LNPTRIGATVSPLNVNVNAAVTDTNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGF 437

Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV--RKADT 358
            A +V   D G+ L   PTV     + +RI  EVS+ +  +   +G + +Y +  R A T
Sbjct: 438 VAENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSI-AYEIGTRNATT 496

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + L  G   +LAGL++D+ +     +P L  IP LG LF     N+ ++EI ++ TP +
Sbjct: 497 LLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRV 556

Query: 419 VKPVAMRDL 427
           ++P    +L
Sbjct: 557 IRPAQRPNL 565


>gi|149925492|ref|ZP_01913756.1| Type II secretory pathway component PulD-like protein [Limnobacter
           sp. MED105]
 gi|149825609|gb|EDM84817.1| Type II secretory pathway component PulD-like protein [Limnobacter
           sp. MED105]
          Length = 633

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 8/152 (5%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSST-GATSVTTHD--YGVVLHFTPTVLSPGRI 328
           LA PTL AI G  + F SG       VS+S  G T+V   +   G+ L  TP  L  GRI
Sbjct: 400 LARPTLAAIEGLPSEFFSGTNLSAGFVSTSVQGGTTVVPLEKRIGIKLAVTPVFLPQGRI 459

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTT----VELPSGGTIVLAGLLKDDIQQLKEG 384
            L+++ + +  +         +Y++   +TT    V +  G T+VL+GL +      ++G
Sbjct: 460 QLKVEAQRTN-LNATTENPRVAYQIEIGETTANANVVMNLGDTLVLSGLSEKSSASNRDG 518

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +P L  +P L  LF N R N  +  + I  TP
Sbjct: 519 VPGLQDVPGLQYLFSNKRTNDLQRSVLILVTP 550


>gi|254507437|ref|ZP_05119572.1| msha biogenesis protein mshl [Vibrio parahaemolyticus 16]
 gi|219549693|gb|EED26683.1| msha biogenesis protein mshl [Vibrio parahaemolyticus 16]
          Length = 527

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 19/189 (10%)

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG----- 303
           V+   SF+ VL  +     +  L+ P +TA + Q A    G    + T +SS  G     
Sbjct: 315 VISSGSFDAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYFVTDLSSVVGNGDNS 374

Query: 304 ----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD----MPSYR 352
                  +T    G+ L  TP +   G + L +     +V+E V  +  GD    +P  R
Sbjct: 375 EPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVNEQVKEIGFGDSRITLPLAR 434

Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++D+ +    G  +V+ GL+K +       +P+L  +P+LG LFRN+    ++TE+
Sbjct: 435 SSIRESDSVIRAQDGDVVVIGGLMKSNTVDQVSKVPVLGDVPVLGHLFRNTSKLTQKTEL 494

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 495 VILLKPTVV 503


>gi|329122312|ref|ZP_08250900.1| competence protein E [Haemophilus aegyptius ATCC 11116]
 gi|327473873|gb|EGF19290.1| competence protein E [Haemophilus aegyptius ATCC 11116]
          Length = 445

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G      + K +  T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEGVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|325280193|ref|YP_004252735.1| type II and III secretion system protein [Odoribacter splanchnicus
           DSM 20712]
 gi|324312002|gb|ADY32555.1| type II and III secretion system protein [Odoribacter splanchnicus
           DSM 20712]
          Length = 628

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 11/172 (6%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDY 312
           +F   L ALE A  +   + P L+ ++G  AS  SG    YK V ++   T   + +  Y
Sbjct: 454 NFYLTLKALEEAGTLELRSTPKLSTLNGHEASLKSGETRYYKEVQNNIMGTQNPIQSESY 513

Query: 313 -------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                   + L   P V S G+I L I+ E SE          P    R   + + + + 
Sbjct: 514 TWKSTEADLSLKIVPYVSSDGKITLTIEIEQSEFTAREEKDAPPGTATRSFKSRIRVDNE 573

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR--EETEIFIAAT 415
             ++L G+ ++  ++   G+PL+++IP+L  LF  S  N+  E+  IFI  T
Sbjct: 574 DMVLLGGIDRNTREKGSSGLPLIARIPVLKWLFGVSTDNKVDEKLSIFIKPT 625


>gi|300721146|ref|YP_003710414.1| putative transport protein [Xenorhabdus nematophila ATCC 19061]
 gi|297627631|emb|CBJ88152.1| putative transport protein, possibly in biosynthesis of type IV
           pilin (fragment) [Xenorhabdus nematophila ATCC 19061]
          Length = 325

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 4/165 (2%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            E  L ALE+   +  +A P LTA     AS   G +  Y  V      T++   +  + 
Sbjct: 160 LEMELSALEQENQLDIIASPRLTASHQHPASIKQGSEIPY--VVQDKDKTTIQFKEAVLG 217

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGL 373
           +  TP +L  G+I L ++   + P   V+ G   +  + K +  T V + +G T++L G+
Sbjct: 218 MEVTPHILREGKIRLALKISQNAPGFPVSQGGNENLAIDKQEIMTQVTVRNGETLILGGI 277

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            +      ++ +P LS IP+LG LF  +       E+ I  TP L
Sbjct: 278 FQQKKVASQQKVPYLSDIPLLGTLFNQNGEQHSRRELVIFITPQL 322


>gi|68249035|ref|YP_248147.1| competence protein E [Haemophilus influenzae 86-028NP]
 gi|148825285|ref|YP_001290038.1| competence protein E [Haemophilus influenzae PittEE]
 gi|59939227|gb|AAX12385.1| ComE [Haemophilus influenzae]
 gi|68057234|gb|AAX87487.1| competence protein E [Haemophilus influenzae 86-028NP]
 gi|148715445|gb|ABQ97655.1| competence protein E [Haemophilus influenzae PittEE]
          Length = 445

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|148263986|ref|YP_001230692.1| type II and III secretion system protein [Geobacter uraniireducens
           Rf4]
 gi|146397486|gb|ABQ26119.1| type II and III secretion system protein [Geobacter uraniireducens
           Rf4]
          Length = 796

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 9/164 (5%)

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPG 326
            TLA P +   + + A F  G +    T SS TG   + +V   D GV L+  PT+    
Sbjct: 422 ETLANPKIRVKNREKAKFNVGQRVPITTTSSPTGGGVSVNVQYVDVGVKLNAEPTIQLNN 481

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRV------RKADTTVELPSGGTIVLAGLLKDDIQQ 380
            + +++  EVS  +     G   S         R  DT + L  G T ++ GL++D   +
Sbjct: 482 EVSIKLSLEVSSILSKEKVGSTDSLTTVVTIGTRNLDTVLSLKDGETSIIGGLMQDLKSK 541

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
            K+ I LL  IP++G L   +     ++E+ +A TP +V+ + +
Sbjct: 542 NKQKIVLLGDIPLIGPLLSQNDDTNNKSELVLAITPRIVRSITI 585


>gi|257454916|ref|ZP_05620164.1| fimbrial assembly protein PilQ [Enhydrobacter aerosaccus SK60]
 gi|257447626|gb|EEV22621.1| fimbrial assembly protein PilQ [Enhydrobacter aerosaccus SK60]
          Length = 776

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 4/149 (2%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           ++ P +     Q+A   SG Q  Y+  S+S GATS +  +  + L  TP +   GRIG+ 
Sbjct: 626 ISSPKVLTADKQTARIMSGTQIPYQEASAS-GATSTSFVEAALSLEVTPNITPEGRIGMD 684

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +  E   P I VN     S    K +  V+   G T+VL G+ K+ +      IP L  +
Sbjct: 685 LSIENGSPTI-VNGATAISKDSIKTNVVVD--DGQTVVLGGVFKNTLGNDVTKIPFLGDL 741

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P +   F+ +  +  + E+ I  TP LV 
Sbjct: 742 PYVDRFFKRTSKSNNKQELLIFVTPKLVN 770


>gi|220932103|ref|YP_002509011.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
 gi|219993413|gb|ACL70016.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
          Length = 385

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 20/240 (8%)

Query: 182 KKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           +K++NL+    +   Q+ + V ++EV    LK++G           PS +   D G   V
Sbjct: 158 EKIINLIKRIDKPRKQIKITVVVSEVSTKELKKLGTGFLEYREKDNPSLNLKYD-GSSLV 216

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS-FTSGGQHLYKTV 298
             G  F         +  T L  L+     +  A+P++  + G+ A  F    Q L+  +
Sbjct: 217 LNGNIFE--------NLLTRLEILQEEEKAKIHADPSIVVMDGEPAELFIGEKQTLF--I 266

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK--A 356
           +             G+ L  TP ++S   + L     +S  V       +P   VR+   
Sbjct: 267 TEDEEIEYFKDIKVGISLKVTPRLISKDEMILDFSPSISHFV----NSKLPEIAVRENTL 322

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DTTV + SG T V+AG+   D    K+ +P L+KIP+L  LF     +  + E+ I  TP
Sbjct: 323 DTTVRVASGQTAVIAGMTLQDDYNYKKSVPGLNKIPLLRWLFTKKVNDTGDRELLIFVTP 382


>gi|308094808|ref|ZP_05891872.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AN-5034]
 gi|308093421|gb|EFO43116.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AN-5034]
          Length = 628

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248
           + ++ + ++I ++  + L+Q+G      G S G ++        D     V+ G   S K
Sbjct: 296 QSRIEVALSIVDISANDLRQLGVDWR-AGVSVGNNRIVDIKTTGDVDNGDVTLGSGQSFK 354

Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            +LD  +   +L     LE   + + ++ PTL       A   +      K V   T A 
Sbjct: 355 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 414

Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              T  YG +L   P ++     +   I L +  E    +      D+PS R  +  T  
Sbjct: 415 EEVT--YGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDLPSVRKTEISTLA 472

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412
            +  G ++++ G+ +D++      +PLL  IP LGALFR N+   R    +FI
Sbjct: 473 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFI 525


>gi|291614284|ref|YP_003524441.1| type II and III secretion system protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291584396|gb|ADE12054.1| type II and III secretion system protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 851

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 11/131 (8%)

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRV--RKADTTV 360
           SV   D G+ L   P +   G + ++   EVS     V    +G + +Y++  R  +T +
Sbjct: 463 SVQYLDVGLKLEVEPDIHMDGEVAIKTYLEVSTIANQVTNAASGSV-AYQIGTRNVNTVL 521

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G T VLAGL+ D+ ++    +P L  +PILG LF ++  ++ +TEI ++ TP ++ 
Sbjct: 522 RLKDGETQVLAGLINDEDRKSSASVPGLGDLPILGHLFSSNGDDKRKTEIILSITPHII- 580

Query: 421 PVAMRDLSRPD 431
               R++ RPD
Sbjct: 581 ----RNIHRPD 587


>gi|254228227|ref|ZP_04921656.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           sp. Ex25]
 gi|151939300|gb|EDN58129.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           sp. Ex25]
          Length = 624

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248
           + ++ + ++I ++  + L Q+G      G S G ++        D     V+ G   + K
Sbjct: 292 QSRIEVALSIVDISANDLSQLGVDWR-AGVSVGNNRIVDIKTTGDVSSGDVTLGSGQNFK 350

Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            +LD  +   +L     LE   + + ++ PTL       A   +      K V   T A 
Sbjct: 351 SLLDSTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 410

Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              T  YG +L   P ++     +  +I L +  E    +      D+PS R  +  T  
Sbjct: 411 EEVT--YGTLLRIVPRIVGDRFAARPKINLSLHLEDGAKITDGGVDDLPSVRKTEISTLA 468

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412
            +  G ++++ G+ +D++      +PLL  IP LGALFR N+   R    +FI
Sbjct: 469 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTKRRTVRMFI 521


>gi|319898044|ref|YP_004136241.1| competence protein e [Haemophilus influenzae F3031]
 gi|317433550|emb|CBY81934.1| competence protein E [Haemophilus influenzae F3031]
          Length = 445

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|148997|gb|AAA25012.1| A mini-Tn10kan insertion in ORF E causes a deficiency in
           transformation. ORF E is 24% identical to the products
           of the filamentous phage gene IV and of pulD, a gene in
           the pulC operon of Klebsiella; ORF; putative
           [Haemophilus influenzae]
          Length = 441

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|290473150|ref|YP_003466011.1| putative transporter [Xenorhabdus bovienii SS-2004]
 gi|289172444|emb|CBJ79211.1| putative transport protein, possibly in biosynthesis of type IV
           pilin (fragment) [Xenorhabdus bovienii SS-2004]
          Length = 361

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 8/168 (4%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            E  L ALE+   +  +A P LTA   Q AS   G    Y  +      T++   +  + 
Sbjct: 196 LEMELSALEQENQLDIIASPRLTASHQQPASIKQGSDIPY--LVQDKDKTTIQFKEAVLG 253

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGL 373
           +  TP +L  G+I L ++   + P + ++ G   +  + K +  T V + +G T++L G+
Sbjct: 254 MEVTPHILRKGKIRLALKISQNAPGLPISQGGNENLAIDKQEIVTQVTVRNGETLILGGI 313

Query: 374 LKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLV 419
            +       + +P LS +P+LGALF  +  + +R E  IFI  TP L 
Sbjct: 314 FQQKKGASLQKVPYLSDLPLLGALFNQKGEQHSRRELVIFI--TPQLT 359


>gi|239618224|ref|YP_002941546.1| type II and III secretion system protein [Kosmotoga olearia TBF
            19.5.1]
 gi|239507055|gb|ACR80542.1| type II and III secretion system protein [Kosmotoga olearia TBF
            19.5.1]
          Length = 2628

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 18/188 (9%)

Query: 250  VLDRFSFETVLHALERATAIRT------------LAEPTLTAISGQSASFTSGGQH--LY 295
            +LD   F  +L  L   +A  T            ++ P++ A+SG+ A    G     L 
Sbjct: 2443 ILDSVDFAKLLKNLITGSATITAQLEKSNVDGSIISNPSIVALSGEEARIHIGDTIPILL 2502

Query: 296  KTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            K +  +TG     +   + GV +  TPTV   G I L +  +VSEP     A D+   + 
Sbjct: 2503 KKIDPATGNIVEELQYLETGVEMTITPTVKDDGTILLDLYIKVSEP--QPYANDLYGEKT 2560

Query: 354  RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            R+A T + +  G T+ + GL+ +        +P    +P +G LFR  +  +E+ E+ I 
Sbjct: 2561 REAKTKLVISDGNTLTIGGLVSERENVSVTKLPFFGDLPFIGKLFRAEKTTKEQREMVIF 2620

Query: 414  ATPFLVKP 421
             T  +V P
Sbjct: 2621 ITAKVVAP 2628


>gi|153836207|ref|ZP_01988874.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AQ3810]
 gi|308126333|ref|ZP_05909374.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AQ4037]
 gi|149750482|gb|EDM61227.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AQ3810]
 gi|308110700|gb|EFO48240.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AQ4037]
          Length = 624

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248
           + ++ + ++I ++  + L+Q+G      G S G ++        D     V+ G   S K
Sbjct: 292 QSRIEVALSIVDISANDLRQLGVDWR-AGVSVGNNRIIDIKTTGDVDNGDVTLGSGQSFK 350

Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            +LD  +   +L     LE   + + ++ PTL       A   +      K V   T A 
Sbjct: 351 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 410

Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              T  YG +L   P ++     +   I L +  E    +      D+PS R  +  T  
Sbjct: 411 EEVT--YGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDLPSVRKTEISTLA 468

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412
            +  G ++++ G+ +D++      +PLL  IP LGALFR N+   R    +FI
Sbjct: 469 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFI 521


>gi|28898470|ref|NP_798075.1| putative type III secretion protein YscC [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28806688|dbj|BAC59959.1| putative type III secretion protein YscC [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 632

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248
           + ++ + ++I ++  + L+Q+G      G S G ++        D     V+ G   S K
Sbjct: 300 QSRIEVALSIVDISANDLRQLGVDWR-AGVSVGNNRIVDIKTTGDVDNGDVTLGSGQSFK 358

Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            +LD  +   +L     LE   + + ++ PTL       A   +      K V   T A 
Sbjct: 359 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 418

Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              T  YG +L   P ++     +   I L +  E    +      D+PS R  +  T  
Sbjct: 419 EEVT--YGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDLPSVRKTEISTLA 476

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412
            +  G ++++ G+ +D++      +PLL  IP LGALFR N+   R    +FI
Sbjct: 477 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFI 529


>gi|296389736|ref|ZP_06879211.1| secretion protein XqhA [Pseudomonas aeruginosa PAb1]
          Length = 776

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 26/252 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242
           Q+ ++  I E+  +I   +G Q ++          FA D G            GK  +E 
Sbjct: 352 QLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFA-DSGLSIGTLLGALQAGKPPAEL 410

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G    ++T S +T
Sbjct: 411 PDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 469

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351
            A       T+V   D GV L  TP +     + L I+ E+S       +   A D+ + 
Sbjct: 470 SASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVTN 529

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   +TV    G  IVL GL++DD+ +    +PLL  IP +G LFR+SR  R +  + 
Sbjct: 530 K-RSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588

Query: 412 IAATPFLVKPVA 423
           +   P +V+  A
Sbjct: 589 VFLRPSIVRDAA 600


>gi|260582299|ref|ZP_05850092.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
           NT127]
 gi|260094667|gb|EEW78562.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
           NT127]
          Length = 447

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|89075207|ref|ZP_01161638.1| putative fimbrial assembly protein [Photobacterium sp. SKA34]
 gi|89049029|gb|EAR54596.1| putative fimbrial assembly protein [Photobacterium sp. SKA34]
          Length = 568

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 7/164 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+       ++ P L   + ++A    G +  Y   SSS GATSV+     + L  T
Sbjct: 406 LSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVT 464

Query: 320 PTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           P +    ++ L +  EV++   G       G   S   ++  T V + +G T+VL G+ +
Sbjct: 465 PQITPDDKLVLDL--EVTQDNKGEDVPTGTGTAISIDTQRIGTQVLVNNGETVVLGGIYQ 522

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  +   +PLL  IPILGALFR+      + E+ I  TP +V
Sbjct: 523 HSMTHVTRKVPLLGDIPILGALFRHKMEQMGKRELLIFVTPKIV 566


>gi|83591449|ref|YP_425201.1| type II and III secretion system protein [Rhodospirillum rubrum
           ATCC 11170]
 gi|83574363|gb|ABC20914.1| type II and III secretion system protein [Rhodospirillum rubrum
           ATCC 11170]
          Length = 547

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 24/168 (14%)

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLY----------KTVSSSTGATSVTTHDYGVVLH 317
           A+RTL+ P LT ++ Q+A        +Y            V+ +T ++ + T   G+V+ 
Sbjct: 349 AVRTLSSPRLTVMNNQTAVLKVAENEVYFVVDVDTVTSDGVTQTTYSSEINTVPIGLVMT 408

Query: 318 FTPTVLSPG--RIGL-------RIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPS 364
             P+V  PG  R+ L       RI   V++P + +        +P   VR+ D+ V + +
Sbjct: 409 VQPSV-EPGGGRVTLGLRPTISRIADRVADPAVSLQNLSVQSLIPVVEVRELDSVVTIDN 467

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           G  +V+ GL+++ + + +EG+P L  +P++G  FR+   + +  E+ +
Sbjct: 468 GAVVVMGGLMQERMGRDEEGVPGLGDVPLIGRAFRHDSADTDVVELVV 515


>gi|323153824|gb|EFZ40066.1| hypothetical protein ECEPECA14_4273 [Escherichia coli EPECa14]
          Length = 436

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 41/248 (16%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           Q+ + V+I +V  + L+Q+G   S T     GS +  S +  A+     +S   +F ++ 
Sbjct: 199 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGSIAFNSSTAQANLSSSVISNANNFMIR- 257

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307
                     ++AL++ +  + L++P++  ++   A         Y  VS    A+  S+
Sbjct: 258 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 306

Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGDMPSY--RV 353
           T+   G +L  TP +L               R+ L IQ + ++     NA D  S    V
Sbjct: 307 TS---GTLLRVTPRILDDNSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSILPEV 362

Query: 354 RKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE-TEI 410
           + ++ T E  L +G +++L G ++D     K+GIPLLS IP++G LF ++   +     +
Sbjct: 363 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGNLFSSTTKQKHSVVRL 422

Query: 411 F-IAATPF 417
           F I ATP 
Sbjct: 423 FLIKATPI 430


>gi|116049822|ref|YP_791371.1| secretion protein XqhA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585043|gb|ABJ11058.1| secretion protein XqhA [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 776

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 26/252 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242
           Q+ ++  I E+  +I   +G Q ++          FA D G            GK  +E 
Sbjct: 352 QLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFA-DSGLSIGTLLGALQAGKPPAEL 410

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G    ++T S +T
Sbjct: 411 PDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 469

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351
            A       T+V   D GV L  TP +     + L I+ E+S       +   A D+ + 
Sbjct: 470 SASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVTN 529

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   +TV    G  IVL GL++DD+ +    +PLL  IP +G LFR+SR  R +  + 
Sbjct: 530 K-RSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588

Query: 412 IAATPFLVKPVA 423
           +   P +V+  A
Sbjct: 589 VFLRPSIVRDAA 600


>gi|313110575|ref|ZP_07796459.1| secretion protein XqhA [Pseudomonas aeruginosa 39016]
 gi|310882961|gb|EFQ41555.1| secretion protein XqhA [Pseudomonas aeruginosa 39016]
          Length = 776

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 26/252 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242
           Q+ ++  I E+  +I   +G Q ++          FA D G            GK  +E 
Sbjct: 352 QLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFA-DSGLSIGTLLGALQAGKPPAEL 410

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G    ++T S +T
Sbjct: 411 PDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 469

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351
            A       T+V   D GV L  TP +     + L I+ E+S       +   A D+ + 
Sbjct: 470 SASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVTN 529

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   +TV    G  IVL GL++DD+ +    +PLL  IP +G LFR+SR  R +  + 
Sbjct: 530 K-RSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588

Query: 412 IAATPFLVKPVA 423
           +   P +V+  A
Sbjct: 589 VFLRPSIVRDAA 600


>gi|308125809|ref|ZP_05777658.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus K5030]
 gi|308111516|gb|EFO49056.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus K5030]
          Length = 604

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248
           + ++ + ++I ++  + L+Q+G      G S G ++        D     V+ G   S K
Sbjct: 272 QSRIEVALSIVDISANDLRQLGVDWR-AGVSVGNNRIVDIKTTGDVDNGDVTLGSGQSFK 330

Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            +LD  +   +L     LE   + + ++ PTL       A   +      K V   T A 
Sbjct: 331 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 390

Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              T  YG +L   P ++     +   I L +  E    +      D+PS R  +  T  
Sbjct: 391 EEVT--YGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDLPSVRKTEISTLA 448

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412
            +  G ++++ G+ +D++      +PLL  IP LGALFR N+   R    +FI
Sbjct: 449 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFI 501


>gi|289207464|ref|YP_003459530.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. K90mix]
 gi|288943095|gb|ADC70794.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. K90mix]
          Length = 710

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 10/161 (6%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+       ++ P +   +GQ+AS   G +  ++  ++S GATS    +  +    T
Sbjct: 552 LSALQVEGRGEIISSPRVITANGQTASIKQGEEIPFQEATAS-GATSTQFIEAVLSTEVT 610

Query: 320 PTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           P +   G + L I+    EP    V+GV     P    R+ +T V + +G T+VL G+ +
Sbjct: 611 PQITPNGNVILDIRVTKDEPSQREVLGV-----PGINKREVNTQVFVGNGETVVLGGVYE 665

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            D +   E +P    IP LG LFRN      + E+ I  TP
Sbjct: 666 IDSRTNLEKVPFFGDIPFLGNLFRNRSTENTKAELLIFVTP 706


>gi|145634568|ref|ZP_01790277.1| competence protein E [Haemophilus influenzae PittAA]
 gi|229844405|ref|ZP_04464545.1| competence protein E [Haemophilus influenzae 6P18H1]
 gi|145268113|gb|EDK08108.1| competence protein E [Haemophilus influenzae PittAA]
 gi|229812654|gb|EEP48343.1| competence protein E [Haemophilus influenzae 6P18H1]
          Length = 445

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|309972408|gb|ADO95609.1| Outer membrane secretin ComE [Haemophilus influenzae R2846]
          Length = 445

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|74316782|ref|YP_314522.1| general secretion pathway protein D [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056277|gb|AAZ96717.1| general secretion pathway protein D [Thiobacillus denitrificans
           ATCC 25259]
          Length = 554

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 125/303 (41%), Gaps = 55/303 (18%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------------ITG 221
           ++ +    +A E QV L+  I EVR     Q G   +                    +TG
Sbjct: 250 ERFLKATALAVERQVMLEAKIIEVRLSDGFQTGINWAALHEGRHKYSSGADAGNFNLVTG 309

Query: 222 SSSGPSKS-FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           ++SG   S   +       + GG F +       SF  +++ LE   A+  L+ P + A+
Sbjct: 310 AASGSLGSVLGSGLPAASGTSGGIFGL--AFQTKSFAALINFLETQGAVHVLSSPRIAAL 367

Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDY--GVVLHFTPTVLSPGRIG 329
           + Q A    G    + T  S+T  T         SVT   +  G+ L  TP +   GRI 
Sbjct: 368 NNQKAVLKVGTDDFFVTNVSTTSNTGGAGTTTTPSVTLQPFFSGIALDVTPQIDERGRIT 427

Query: 330 LRIQTEVS---EPVIGVNAG-------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           L ++  VS   E +  ++AG        + S  V + D+ V++  G  + + G++K    
Sbjct: 428 LHVRPSVSVVTEKIKNIDAGAAGSLTLPLASSAVSETDSVVQVEDGRIVAIGGMMKQSFD 487

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
                +P + ++P+LG  F N+  +  ++E+ I     L+KP  +      D     + D
Sbjct: 488 DSANRVPAIGRVPLLGYFFGNTARSASKSELVI-----LIKPTVI------DSQEDWQAD 536

Query: 440 AKA 442
           A+A
Sbjct: 537 AEA 539


>gi|288818586|ref|YP_003432934.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
 gi|288787986|dbj|BAI69733.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
 gi|308752177|gb|ADO45660.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
          Length = 665

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 12/197 (6%)

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTHDY---GVVLHFT 319
           E  +    ++ P +  +  Q+A    G    Y + V        V T+DY   G+ L  T
Sbjct: 464 ESGSGFNIVSNPKVLTLDNQTAEIKVGQVVPYASGVKFDINGMPVITYDYKEVGLDLGVT 523

Query: 320 PTVLSPG---RIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           PT+       +I L++Q  V    P IG  +  +P    R+ ++ V + +G TI++ GL+
Sbjct: 524 PTISGKDLRLQINLKLQDIVDYIRPQIGTLSYAVPVTSNRQVNSDVVVENGQTIIIGGLV 583

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDH 433
                   +G+P L  IP LG +FR      ++  +FI  TP+++ KP  + +++R   H
Sbjct: 584 NTKTLTSTQGVPGLKDIPGLGRIFRRDTKTEDKVSLFIFLTPYVIEKPEELSEITR--QH 641

Query: 434 YSVEDDAKAFFFNRVNK 450
             + ++ K     R  K
Sbjct: 642 QKMAEELKKLIEEREKK 658


>gi|260222239|emb|CBA31603.1| hypothetical protein Csp_D27950 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 711

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 44/266 (16%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----------------SFAADFGGKF 238
           QV ++  IAEV  D   + G Q      ++G S                 S AA      
Sbjct: 398 QVFVESLIAEVSADKAAEFGIQWQGALGNAGDSAIGVLGTNFGSAGSNIISLAAAGASGT 457

Query: 239 VSEGGDFSVKGVLDRFSFETVL----HALERATAIRTLAEPTLTAIS--------GQSAS 286
           VS     ++ GV +R +   VL      LE   +   L+ P L  +         GQ+  
Sbjct: 458 VSPAKGLNI-GVANRTNGVYVLGFLARFLESTGSGNVLSTPNLLTLDNEEAKIVIGQNVP 516

Query: 287 FTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           F +G    +    S+ G+     ++   D G+ L   P +   G I L I  EVS  V+ 
Sbjct: 517 FVTG---QFTNTGSNGGSVNPFQTIERKDVGLTLKVKPQISENGTIKLAIYQEVSS-VLA 572

Query: 343 VNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             AG  + P+   R  ++ V +  G  +VL GLL+D+    +E +P L+ +P  G LF++
Sbjct: 573 STAGAANGPTTNKRTIESNVLVEDGAVVVLGGLLQDEYAGNQEKVPGLADVPWFGNLFKS 632

Query: 401 SRFNREETEIFIAATPFLVKPVAMRD 426
              +R++T + +      ++PV +RD
Sbjct: 633 ESRSRKKTNLMV-----FLRPVVVRD 653


>gi|297567918|ref|YP_003686888.1| type II and III secretion system protein [Meiothermus silvanus DSM
           9946]
 gi|296852367|gb|ADH65380.1| type II and III secretion system protein [Meiothermus silvanus DSM
           9946]
          Length = 670

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 22/243 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L+V + ++      +IG   +   ++ GP  S  AD G      G +    G+L   
Sbjct: 395 QVDLQVRVEQLSSSNGDEIG---AALEAALGP-LSLKADPGSGQYGLGLEVGKTGLLK-- 448

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-------TVSSSTGATSV 307
                L AL+ A   R+L +   T  SG+S +  SGG  L           S  T  T +
Sbjct: 449 -LNAALKALQSAGKGRSLIDSRFTVSSGESVNLLSGGSLLIPLTSTGTGGSSGGTSTTGL 507

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
              ++G+ L  TPTV+   +I L +   + S P +G N   +     ++  + V L SG 
Sbjct: 508 QNVEFGLELKLTPTVIPGDKIQLGVNINLGSAPTVGPNNSTL--VPKQQLTSNVLLSSGN 565

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT-----PFLVKP 421
           + VL G++  + ++ + GIP+L  +P++G LF  +  +  +T + I  T     P  VKP
Sbjct: 566 SAVLGGVISVEEKESRSGIPVLMDLPLIGGLFSQTVKSSSQTHLLIVVTAVSRLPEAVKP 625

Query: 422 VAM 424
            +M
Sbjct: 626 ASM 628


>gi|319639388|ref|ZP_07994138.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           mucosa C102]
 gi|317399283|gb|EFV79954.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           mucosa C102]
          Length = 710

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + A E     +T++ P +     + A   SG +  Y+  SSS GATS+T     + L  T
Sbjct: 542 ISASEEQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEASSS-GATSITFKKAVLGLTVT 600

Query: 320 PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G+I + ++     P+   V++        +  +T   +  GGT+++ G+ +++ 
Sbjct: 601 PNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEES 660

Query: 379 QQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLVKPV 422
                 +P+L  IP++G LF  R  R NR E  IFI  TP ++  V
Sbjct: 661 TNAVNKVPILGDIPVVGNLFKSRGKRENRRELLIFI--TPRIMDNV 704


>gi|145636296|ref|ZP_01791965.1| competence protein E [Haemophilus influenzae PittHH]
 gi|145270461|gb|EDK10395.1| competence protein E [Haemophilus influenzae PittHH]
          Length = 445

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|260550835|ref|ZP_05825042.1| type II secretory pathway [Acinetobacter sp. RUH2624]
 gi|260406145|gb|EEW99630.1| type II secretory pathway [Acinetobacter sp. RUH2624]
          Length = 721

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311
           F  +  L AL+       ++ P +     Q+A   +G Q  Y+T ++S   ++ TT   D
Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQTTTNSAAGSTATTSFKD 606

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367
             + L+ TP++   G+I +++  ++S+  +   AG  P+  +       +T V + +G T
Sbjct: 607 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 661

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++L G+ +      +  +P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 662 VILGGVFEQTTTNSQTKVPFFGDIPVVGHLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720


>gi|288942750|ref|YP_003444990.1| type IV pilus secretin PilQ [Allochromatium vinosum DSM 180]
 gi|288898122|gb|ADC63958.1| type IV pilus secretin PilQ [Allochromatium vinosum DSM 180]
          Length = 787

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 2/177 (1%)

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           DF + G +  +  +  L A++R      ++ P +       A+   G +  Y+   S  G
Sbjct: 607 DFLI-GKVGSYLIQLELSAMQREGRGEIISSPRVITADKNKATIKVGSEIPYQE-QSGQG 664

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            TS+   +  + L  TP +    RI + ++     P    +  + P    R   T V + 
Sbjct: 665 NTSIAFKEAVLQLDVTPQITPDDRIIMDLEVRKDRPDWSRSINNTPPIDTRSVKTNVVID 724

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +G T+VL G+ + +    KE +P L  +P+LG LF+        TE+ I  TP ++K
Sbjct: 725 NGETVVLGGVFEREKTFSKEQVPWLGDVPVLGRLFKQEARQDSNTELLIFVTPKILK 781


>gi|145630388|ref|ZP_01786169.1| competence protein E [Haemophilus influenzae R3021]
 gi|144984123|gb|EDJ91560.1| competence protein E [Haemophilus influenzae R3021]
          Length = 447

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|308095101|ref|ZP_05903504.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus Peru-466]
 gi|308085930|gb|EFO35625.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus Peru-466]
          Length = 624

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248
           + ++ + ++I ++  + L+Q+G      G S G ++        D     V+ G   S K
Sbjct: 292 QSRIEVALSIVDISANDLRQLGVDWR-AGVSVGNNRIVDIKTTGDVDNGDVTLGSGQSFK 350

Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            +LD  +   +L     LE   + + ++ PTL       A   +      K V   T A 
Sbjct: 351 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 410

Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              T  YG +L   P ++     +   I L +  E    +      D+PS R  +  T  
Sbjct: 411 EEVT--YGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDLPSVRKTEISTLA 468

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412
            +  G ++++ G+ +D++      +PLL  IP LGALFR N+   R    +FI
Sbjct: 469 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFI 521


>gi|145640400|ref|ZP_01795984.1| competence protein E [Haemophilus influenzae R3021]
 gi|145274986|gb|EDK14848.1| competence protein E [Haemophilus influenzae 22.4-21]
          Length = 445

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|107101302|ref|ZP_01365220.1| hypothetical protein PaerPA_01002336 [Pseudomonas aeruginosa PACS2]
          Length = 776

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 26/252 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242
           Q+ ++  I E+  +I   +G Q ++          FA D G            GK  +E 
Sbjct: 352 QLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFA-DSGLSIGTLLGALQAGKPPAEL 410

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G    ++T S +T
Sbjct: 411 PDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 469

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351
            A       T+V   D GV L  TP +     + L I+ E+S       +   A D+ + 
Sbjct: 470 SASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVTN 529

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   +TV    G  IVL GL++DD+ +    +PLL  IP +G LFR+SR  R +  + 
Sbjct: 530 K-RSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588

Query: 412 IAATPFLVKPVA 423
           +   P +V+  A
Sbjct: 589 VFLRPSIVRDAA 600


>gi|16272383|ref|NP_438596.1| competence protein E [Haemophilus influenzae Rd KW20]
 gi|260580502|ref|ZP_05848330.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
           RdAW]
 gi|1169008|sp|P31772|COME_HAEIN RecName: Full=Competence protein E; AltName: Full=DNA
           transformation protein ComE; Flags: Precursor
 gi|1573410|gb|AAC22094.1| competence protein E (comE) [Haemophilus influenzae Rd KW20]
 gi|260092844|gb|EEW76779.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
           RdAW]
          Length = 445

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|145628805|ref|ZP_01784605.1| competence protein E [Haemophilus influenzae 22.1-21]
 gi|145638655|ref|ZP_01794264.1| competence protein E [Haemophilus influenzae PittII]
 gi|144979275|gb|EDJ88961.1| competence protein E [Haemophilus influenzae 22.1-21]
 gi|145272250|gb|EDK12158.1| competence protein E [Haemophilus influenzae PittII]
 gi|309750149|gb|ADO80133.1| Outer membrane secretin ComE [Haemophilus influenzae R2866]
          Length = 445

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|229846521|ref|ZP_04466629.1| competence protein E [Haemophilus influenzae 7P49H1]
 gi|229810614|gb|EEP46332.1| competence protein E [Haemophilus influenzae 7P49H1]
          Length = 445

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|148976513|ref|ZP_01813209.1| Type II secretory pathway, component EpsD [Vibrionales bacterium
           SWAT-3]
 gi|145964089|gb|EDK29346.1| Type II secretory pathway, component EpsD [Vibrionales bacterium
           SWAT-3]
          Length = 674

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 49/250 (19%)

Query: 215 FQHSITGSSSG------------PSKSFAADFGGKFV-----SEGGDFS--------VKG 249
            Q+S TG+S G             + +   D  GKF+     +E GD+S        V G
Sbjct: 375 IQYSNTGASIGGVMVGLEEAKDTETTTAVYDKNGKFLGNETTTEQGDYSTLASALSGVNG 434

Query: 250 VLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                    +  ++ A+   +    L+ P++T +    ASF  G     + V   TG+T+
Sbjct: 435 AAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVG-----EEVPVLTGSTA 489

Query: 307 VTTHD----------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
            +++D           G+ L   P +     + L+I+ EVS  V+G N      +  R+ 
Sbjct: 490 GSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQL 548

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T+V +  G  +VL GL+ +   + +  +P L  IP+LG LF+++    E+  + +    
Sbjct: 549 NTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVEKKNLMV---- 604

Query: 417 FLVKPVAMRD 426
             +KP  +RD
Sbjct: 605 -FIKPTIIRD 613


>gi|284097759|ref|ZP_06385757.1| Type II secretory pathway, component PulD [Candidatus Poribacteria
           sp. WGA-A3]
 gi|283830734|gb|EFC34846.1| Type II secretory pathway, component PulD [Candidatus Poribacteria
           sp. WGA-A3]
          Length = 406

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SV 307
           FE V+ AL+    ++ +++P +  ++ Q A    G    + T +++ G           V
Sbjct: 229 FEGVIQALQEQGDVQVVSQPRILTLNNQPALIKVGTDQSFFTSTTTQGTAGAGNIVTEQV 288

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
            T   G+VL  TP +   G I + +    T +++ V   N    P   V+++   V +  
Sbjct: 289 RTVTSGLVLSVTPQISRDGWIMMDVSPIITRLTDTVESRNGSTAPVLEVKQSGGLVRIRD 348

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G  +++ GL+++ +   +  +P L  +P+LG+ F  +      TE+ I   P +++
Sbjct: 349 GQLVMIGGLIQEQLTNTERAVPFLGDLPVLGSFFSGTYQAERNTELVIFLMPRILR 404


>gi|262394108|ref|YP_003285962.1| type III secretion system outer membrane pore YscC [Vibrio sp.
           Ex25]
 gi|262337702|gb|ACY51497.1| type III secretion system outer membrane pore YscC [Vibrio sp.
           Ex25]
          Length = 604

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248
           + ++ + ++I ++  + L Q+G      G S G ++        D     V+ G   + K
Sbjct: 272 QSRIEVALSIVDISANDLSQLGVDWR-AGVSVGNNRIVDIKTTGDVSSGDVTLGSGQNFK 330

Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            +LD  +   +L     LE   + + ++ PTL       A   +      K V   T A 
Sbjct: 331 SLLDSTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 390

Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              T  YG +L   P ++     +  +I L +  E    +      D+PS R  +  T  
Sbjct: 391 EEVT--YGTLLRIVPRIVGDRFAARPKINLSLHLEDGAKITDGGVDDLPSVRKTEISTLA 448

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412
            +  G ++++ G+ +D++      +PLL  IP LGALFR N+   R    +FI
Sbjct: 449 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTKRRTVRMFI 501


>gi|160872504|ref|ZP_02062636.1| putative fimbrial assembly protein PilQ [Rickettsiella grylli]
 gi|159121303|gb|EDP46641.1| putative fimbrial assembly protein PilQ [Rickettsiella grylli]
          Length = 442

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 4/147 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+  A   ++ P L     Q A   +G +  Y+   +S G TS+      + L  T
Sbjct: 284 LSALEKEGAAEVISTPHLITADQQPAFIEAGDEIPYQE-KASGGGTSLIFKKAVLSLKVT 342

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P ++   RI L ++    +P       D P+ + R   T + + SG TIVL G+ +    
Sbjct: 343 PQIMPQERIILDLEVNQDQP--NSVMVDAPTIKARGIKTQIIVKSGETIVLGGVYEYSQG 400

Query: 380 QLKEGIPLLSKIPILGALFRNSR-FNR 405
           +L++ +P L  +P++G LFR ++ +NR
Sbjct: 401 KLEQRVPFLGSLPLIGRLFRLTKVYNR 427


>gi|268679665|ref|YP_003304096.1| pilus (MSHA type) biogenesis protein MshL [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617696|gb|ACZ12061.1| pilus (MSHA type) biogenesis protein MshL [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 506

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 37/198 (18%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-------T 297
           FSV G++D          L  +   + ++ P +  ++ Q A  T G    Y+        
Sbjct: 302 FSVSGLIDF---------LGSSGDAKVVSSPKVLTMNNQQALITVGDNINYRIPEETDAA 352

Query: 298 VSSSTGATSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVS------------EPVI 341
            +S T   SVT  +Y    GV+L+ TP +     I LRI   VS            EP  
Sbjct: 353 TTSGTATLSVTYMNYSIFIGVLLNITPEISEDNEIILRINPSVSSFKYTDDDQKTTEP-- 410

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                  P  + +K  T V++  G TI+L GL+  +       +PLLS IP+LG  F++S
Sbjct: 411 ---REIAPDTQEKKLSTVVKVKDGSTIILGGLIASEKGHENSSVPLLSSIPLLGEAFKHS 467

Query: 402 RFNREETEIFIAATPFLV 419
               +  E+    TP ++
Sbjct: 468 EETLKTKELVFVITPRII 485


>gi|121610459|ref|YP_998266.1| general secretion pathway protein D [Verminephrobacter eiseniae
           EF01-2]
 gi|121555099|gb|ABM59248.1| general secretion pathway protein D [Verminephrobacter eiseniae
           EF01-2]
          Length = 740

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 1/156 (0%)

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PV 340
           G +  F +G      + S+    T+V   D G++L   P +   G + L +  EVS+   
Sbjct: 531 GNNVPFVTGSYANSSSNSTVNPFTTVQRQDVGLMLRVRPQINENGTVKLSVYQEVSKIDA 590

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             + + + P+   R  ++ V +  G  IV+ GLL+D     ++ +P+L  +P+LG LFR+
Sbjct: 591 STLTSPNGPTTSKRSIESNVLVEDGSIIVIGGLLEDSYSLNQDKVPVLGDMPVLGNLFRS 650

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
            +  R +T + I   P +++  A  D+   D + ++
Sbjct: 651 EKRTRNKTNLMIFLRPTVLRSSASSDILTADRYDAI 686


>gi|131592|sp|P15644|GSPD_KLEPN RecName: Full=General secretion pathway protein D; AltName:
           Full=Pullulanase secretion envelope pulD; Flags:
           Precursor
 gi|7246031|gb|AAA25126.2| pulD (ttg start codon) [Klebsiella pneumoniae]
          Length = 660

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 16/181 (8%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
           ++  +L AL  +T    LA P++  +    A+F  G +    T S +T       +V   
Sbjct: 423 NWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERK 482

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDM-PSYRVRKADTTVELPSGGT 367
             G+ L   P +     + L I+ EVS      ++   D+  ++  R  +  V + SG T
Sbjct: 483 TVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGET 542

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFLVKPVAMR 425
           +V+ GLL   +    + +PLL  IP++GALFR++  + ++    +FI       +P  +R
Sbjct: 543 VVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFI-------RPTVIR 595

Query: 426 D 426
           D
Sbjct: 596 D 596


>gi|86147852|ref|ZP_01066158.1| MSHA biogenesis protein MshL [Vibrio sp. MED222]
 gi|85834379|gb|EAQ52531.1| MSHA biogenesis protein MshL [Vibrio sp. MED222]
          Length = 562

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 21/186 (11%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-GQHLYKTVSSSTGA--------- 304
           SFE VL  ++    +  L+ P +TA + Q A    G  ++    +SSS G+         
Sbjct: 354 SFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGIDKYFVTNLSSSVGSGDNANVAPE 413

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----------PVIGVNAGDMPSYRV 353
             +T    G+ L  TP +   G + L +   V E              GV    +    +
Sbjct: 414 VELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEVKELNLGSTTGVVTLPLAKSSI 473

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R++D+ +    G  +V+ GL+K +   +   +P L  IP LG LFRN+    ++TE+ I 
Sbjct: 474 RESDSVIRAQDGDVVVIGGLMKSNTSDMTSKVPFLGDIPALGHLFRNTSQLTQKTELVIL 533

Query: 414 ATPFLV 419
             P +V
Sbjct: 534 LKPTVV 539


>gi|261381191|ref|ZP_05985764.1| type IV pilus biogenesis protein PilQ [Neisseria subflava NJ9703]
 gi|284795810|gb|EFC51157.1| type IV pilus biogenesis protein PilQ [Neisseria subflava NJ9703]
          Length = 710

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + A E     +T++ P +     + A   SG +  Y+  SSS GATS+T     + L  T
Sbjct: 542 ISASEEQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEASSS-GATSITFKKAVLGLTVT 600

Query: 320 PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G+I + ++     P+   V++        +  +T   +  GGT+++ G+ +++ 
Sbjct: 601 PNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEES 660

Query: 379 QQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLVKPV 422
                 +P+L  IP++G LF  R  R NR E  IFI  TP ++  V
Sbjct: 661 TNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFI--TPRIMDNV 704


>gi|145632680|ref|ZP_01788414.1| competence protein E [Haemophilus influenzae 3655]
 gi|144986875|gb|EDJ93427.1| competence protein E [Haemophilus influenzae 3655]
          Length = 401

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 223 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 282

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 283 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 342

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 343 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 385


>gi|193062144|ref|ZP_03043240.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli E22]
 gi|194426396|ref|ZP_03058951.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli B171]
 gi|260845704|ref|YP_003223482.1| T3SS structure protein EscC [Escherichia coli O103:H2 str. 12009]
 gi|260858255|ref|YP_003232146.1| T3SS structure protein EscC [Escherichia coli O26:H11 str. 11368]
 gi|13447709|gb|AAK26708.1|AF200363_16 EscC [Escherichia coli]
 gi|18034513|gb|AAL57535.1|AF453441_19 EscC [Escherichia coli]
 gi|17384643|emb|CAC81855.1| EscC protein [Escherichia coli]
 gi|57434464|emb|CAI43881.1| EscC protein [Escherichia coli]
 gi|192932364|gb|EDV84962.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli E22]
 gi|194415704|gb|EDX31971.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli B171]
 gi|195183205|dbj|BAG66750.1| T3SS structure protein EscC [Escherichia coli O111:H-]
 gi|254692333|emb|CAR47974.1| EscC protein [Escherichia coli]
 gi|254692401|emb|CAR48044.1| EscC protein [Escherichia coli]
 gi|257756904|dbj|BAI28406.1| T3SS structure protein EscC [Escherichia coli O26:H11 str. 11368]
 gi|257760851|dbj|BAI32348.1| T3SS structure protein EscC [Escherichia coli O103:H2 str. 12009]
 gi|323163017|gb|EFZ48850.1| hypothetical protein ECE128010_0613 [Escherichia coli E128010]
          Length = 512

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 41/248 (16%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           Q+ + V+I +V  + L+Q+G   S T     GS +  S +  A+     +S   +F ++ 
Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGSIAFNSSTAQANLSSSVISNANNFMIR- 333

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307
                     ++AL++ +  + L++P++  ++   A         Y  VS    A+  S+
Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382

Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGDMPSY--RV 353
           T+   G +L  TP +L               R+ L IQ + ++     NA D  S    V
Sbjct: 383 TS---GTLLRVTPRILDDNSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSILPEV 438

Query: 354 RKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE-TEI 410
           + ++ T E  L +G +++L G ++D     K+GIPLLS IP++G LF ++   +     +
Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGNLFSSTTKQKHSVVRL 498

Query: 411 F-IAATPF 417
           F I ATP 
Sbjct: 499 FLIKATPI 506


>gi|300697020|ref|YP_003747681.1| type II secretory pathway, gspD-related protein [Ralstonia
           solanacearum CFBP2957]
 gi|299073744|emb|CBJ53265.1| putative type II secretory pathway, gspD-related protein [Ralstonia
           solanacearum CFBP2957]
          Length = 761

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328
           LA P + A + + A    G +  +  T S+STG  + SV   D G+ L   P++     +
Sbjct: 404 LANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEV 463

Query: 329 GLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            ++I  EVS     I   +G + +Y++  R A+T ++L  G T +LAGL+K         
Sbjct: 464 SMKINLEVSSLTNQITTRSGTV-AYQIGTRSANTVLKLHDGETQLLAGLIKTQQTSSAAR 522

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           IP L  IP+LG LF +   N    EI ++ TP +VKP
Sbjct: 523 IPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP 559


>gi|223936189|ref|ZP_03628102.1| type II and III secretion system protein [bacterium Ellin514]
 gi|223895051|gb|EEF61499.1| type II and III secretion system protein [bacterium Ellin514]
          Length = 906

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 43/223 (19%)

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS-------GGQHLYKTV 298
           +V G+L    F   + ALE+   +  L  P +T  SG+ A   +        GQ   +  
Sbjct: 662 TVTGLLTDPQFRVAIRALEQRDGVDLLTAPDVTTESGRQAQIQAIDIQTIVTGQQFGQGA 721

Query: 299 SSSTGATSV---------TTHDY-------GVVLHFTPTVLSPG-RIGLRIQTEVSE--- 338
           + +  A+ V         TT  Y       G VL   P V +    + + I   V+E   
Sbjct: 722 NGANAASGVGSTVIQNTATTSQYTTQTLPFGPVLDVIPYVSADEFSVQMTIIPTVTEFVQ 781

Query: 339 -----PVIG-----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
                P +            V A  +P +R+R+  T+V +    T+VL GL+ D + ++K
Sbjct: 782 YDPPGPFVPQASAIAGGTSVVGALPLPHFRMRQVTTSVTVWDSQTVVLGGLITDSVTKIK 841

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           + +PLL  +P +G LFR+    + +  + I  TP ++ P   R
Sbjct: 842 DQVPLLGDMPFVGRLFRSESSQKTKKNLVIFVTPTIINPDGSR 884


>gi|148827632|ref|YP_001292385.1| competence protein E [Haemophilus influenzae PittGG]
 gi|148718874|gb|ABR00002.1| competence protein E [Haemophilus influenzae PittGG]
          Length = 445

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKGGETIVLGGVFHDT 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429


>gi|163802236|ref|ZP_02196131.1| general secretion pathway protein D precursor [Vibrio sp. AND4]
 gi|159174041|gb|EDP58851.1| general secretion pathway protein D precursor [Vibrio sp. AND4]
          Length = 675

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 104/235 (44%), Gaps = 29/235 (12%)

Query: 239 VSEGGDFS--------VKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
           V+E GD+S        V G    L    +  ++ A+   +    L+ P++T +    ASF
Sbjct: 415 VTESGDYSTLAAALGGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASF 474

Query: 288 TSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
             G + +     S++GA       +V   + G+ L   P +     + L I+ EVS  V+
Sbjct: 475 IVG-EEVPVITGSTSGANNDNPFQTVDRKEVGIKLKVVPQINEGDSVHLDIEQEVSN-VL 532

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G        +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP++G LF+++
Sbjct: 533 GAEGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERAMESESKVPLLGDIPVIGQLFKST 592

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
               ++  + +      +KP  +RD    D         + + F R  ++Y  +E
Sbjct: 593 STQTQKRNLMV-----FIKPTIIRDGMTADGITQ-----RKYNFIRAEQLYKAQE 637


>gi|294788170|ref|ZP_06753413.1| type IV pilus secretin PilQ [Simonsiella muelleri ATCC 29453]
 gi|294483601|gb|EFG31285.1| type IV pilus secretin PilQ [Simonsiella muelleri ATCC 29453]
          Length = 700

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 2/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E     +T++ P +     + A    G Q  Y+T   + G+ +    D  + +  T
Sbjct: 532 LSAMEEENRSKTISSPRVLTQDRKEAEIRQGTQIPYQT-RDADGSYTTAFKDAVLSMKVT 590

Query: 320 PTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +     I L +           +NA   P+  V++  T   + +GGT+V+ G+ ++ I
Sbjct: 591 PRITPDNNIILDVTINKDNVDNTRINADGEPAISVKQVKTQAMVENGGTLVVGGVYQEQI 650

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                 +PLL  +P+LG LF++   N + +E+    TP +++
Sbjct: 651 SNNISKVPLLGDVPVLGNLFKSKSRNHQRSEVLFFITPRIIE 692


>gi|260654164|ref|ZP_05859654.1| putative bacterial type II/III secretion system short domain
           protein [Jonquetella anthropi E3_33 E1]
 gi|260631149|gb|EEX49343.1| putative bacterial type II/III secretion system short domain
           protein [Jonquetella anthropi E3_33 E1]
          Length = 531

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 12/215 (5%)

Query: 194 DQVTLKVTIAEVRRD-------ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
           DQV +K  I EV  D       +L+ +  Q  ++ SS   S  F  D         G   
Sbjct: 295 DQVMIKARIIEVNDDATSEMESVLQAVYHQWWLSFSSGVASLGFF-DSSSPLAPSSGTAQ 353

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
             G + R     +   +E+  A R LA+PT+  + G  A+     +  Y +     G   
Sbjct: 354 GAGTVARMLDARIAGLVEKGKA-RVLADPTVVVLDGHKATIKLVDRVKYVSWRDDAGNPG 412

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELP 363
            +  + G  L  TP V S G + + +  +  E V     G   D+P    R+  ++V + 
Sbjct: 413 YSDEEVGPRLEVTPRVGSEGGMTISMALKTGEIVQWKRGGLGEDVPQISEREVSSSVRVL 472

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            G   V+ GL K+ + +  + IP+L  +P+LG+LF
Sbjct: 473 DGQPFVVGGLFKESVSKTTQRIPVLGDLPLLGSLF 507


>gi|315125412|ref|YP_004067415.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas sp. SM9913]
 gi|315013925|gb|ADT67263.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas sp. SM9913]
          Length = 696

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 3/159 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE       +A P +TA + Q A    G +  Y   S+S+GAT+V+     + L  T
Sbjct: 534 LTALEEENKGEIIASPRITAANQQKARIEQGTEIPY-VESASSGATTVSFKKAVLSLEVT 592

Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    ++   L I  +     +    G   +   ++ +T V + +G T+VL G+ +  
Sbjct: 593 PHITPDNKVILNLIITQDTRGDTVQTGTGPAVAIDTQQIETQVLVENGQTVVLGGIFQQQ 652

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           I    + +PLL  +P +G LF+++    E+ E+ I  TP
Sbjct: 653 IINSTKKVPLLGDLPYVGRLFKSTSEFNEKRELLIFVTP 691


>gi|325284394|ref|YP_004256934.1| type II and III secretion system protein [Deinococcus proteolyticus
           MRP]
 gi|324316458|gb|ADY27571.1| type II and III secretion system protein [Deinococcus proteolyticus
           MRP]
          Length = 784

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 16/198 (8%)

Query: 227 SKSFAADF-----GGKFVSEGGDFSV--KGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           +K+   D+     G  F  + G  S+     L   S E  L+A       RTL +   TA
Sbjct: 490 AKALGLDWKLGLGGVTFGQQNGSLSLGYTPSLTPASIEAKLNATLSNGNGRTLIDSQFTA 549

Query: 280 ISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +SGQ   F +GG+ +++  SS+ G     T   T+ YG+ +   P +   G + L + T 
Sbjct: 550 LSGQETKFQNGGELVFRPQSSTVGDNTVQTPAQTYSYGLDITMRPRIAPDGTVVLVLDTT 609

Query: 336 VSEPVIGVNAGDMPS-YRVRKA-DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           +  P +    G + S  + R+A  TTV++  G T+VL G++   +     GIP L  +P+
Sbjct: 610 LGNPPV---RGVLDSIQQTRQALKTTVQIRPGETVVLGGVVTSSVSNSSSGIPGLRDLPV 666

Query: 394 LGALFRNSRFNREETEIF 411
           +G LF     +R +  + 
Sbjct: 667 IGPLFGQQSTDRNDDALL 684


>gi|299768549|ref|YP_003730575.1| Type II secretory pathway, component HofQ [Acinetobacter sp. DR1]
 gi|298698637|gb|ADI89202.1| Type II secretory pathway, component HofQ [Acinetobacter sp. DR1]
          Length = 721

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311
           F  +  L AL+       ++ P +     Q A   +G Q  Y++ ++S   ++ TT   D
Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQPAKVATGQQVPYQSTTNSAAGSTATTSFKD 606

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367
             + L+ TP++   G+I +++  ++S+  +   AG  P+  +     + +T V + +G T
Sbjct: 607 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNQINTNVLVNNGET 661

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++L G+ +      +  +P    IP+LG LFR    + ++ E+ I  TP +V    +R+
Sbjct: 662 VILGGVFEQTTTNSQTKVPFFGDIPVLGHLFRKDVKSDDKQELLIFVTPRIVNDTLVRN 720


>gi|73542815|ref|YP_297335.1| type II and III secretion system secretin [Ralstonia eutropha
           JMP134]
 gi|72120228|gb|AAZ62491.1| type II and III secretion system protein:NolW-like:Secretin/TonB,
           short N-terminal [Ralstonia eutropha JMP134]
          Length = 706

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +   +   A    G +  Y+  +SS GATSV      + L  T
Sbjct: 543 LSALEADGKGKIISSPRVVTANNIKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVT 601

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++  +G+      +   +   T V + +GGT+V+ G+      
Sbjct: 602 PQITPEGNVLLDV--DVNKDSVGIQTTSGFAIDTKHVQTQVLVDNGGTVVIGGIYTQTES 659

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              + +P L  IP+LG LF+N+   R  TE+ +  TP
Sbjct: 660 TDVDKVPFLGDIPVLGYLFKNNAKVRNRTELLVFLTP 696


>gi|91212377|ref|YP_542363.1| type II secretion protein GspD [Escherichia coli UTI89]
 gi|218560038|ref|YP_002392951.1| general secretion pathway protein D precursor [Escherichia coli
           S88]
 gi|237706291|ref|ZP_04536772.1| type II secretion protein GspD [Escherichia sp. 3_2_53FAA]
 gi|91073951|gb|ABE08832.1| hypothetical type II secretion protein GspD [Escherichia coli
           UTI89]
 gi|218366807|emb|CAR04576.1| general secretion pathway protein D precursor [Escherichia coli
           S88]
 gi|226899331|gb|EEH85590.1| type II secretion protein GspD [Escherichia sp. 3_2_53FAA]
 gi|294493975|gb|ADE92731.1| general secretion pathway protein D [Escherichia coli IHE3034]
 gi|307625435|gb|ADN69739.1| general secretion pathway protein D precursor [Escherichia coli
           UM146]
 gi|323951515|gb|EGB47390.1| general secretion pathway protein D [Escherichia coli H252]
          Length = 686

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|260773652|ref|ZP_05882568.1| type II secretory pathway component PulD [Vibrio metschnikovii CIP
           69.14]
 gi|260612791|gb|EEX37994.1| type II secretory pathway component PulD [Vibrio metschnikovii CIP
           69.14]
          Length = 536

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 111/268 (41%), Gaps = 32/268 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ +++ ++  + QV L+  I EV  +   Q G   S T SS+G             VS 
Sbjct: 247 RQFLDMSHLRIQRQVILEAKILEVTLNDGFQQGINWSKTFSSNGNDYQLGQGVISNPVSS 306

Query: 242 -----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                      GG  ++  V+   SF+ VL  +     +  L+ P +TA + Q A    G
Sbjct: 307 LPGMDAIGTLLGGQTNL--VVKSGSFDAVLSFMSTQGDLNVLSSPRVTAANNQKAVIKVG 364

Query: 291 GQHLYKT-VSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVS 337
               Y T ++S  G            +T    G+ L  TP +   G + L +     EV 
Sbjct: 365 TDEYYVTDLTSEVGTGDNANVAPNIQLTPFFSGISLDVTPQIDDDGYVFLHVHPSVIEVE 424

Query: 338 EPVIGVNAGD----MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           E    V   D    +P  R  +R++D+ +    G  +V+ GL+K +       +P    I
Sbjct: 425 EQKKSVQFNDRIITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTMNQTSKVPFFGDI 484

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P+LG LFR +    ++TE+ I   P +V
Sbjct: 485 PLLGHLFRQTSNVTQKTELVILLKPTVV 512


>gi|117625269|ref|YP_854407.1| putative type II secretion protein GspD [Escherichia coli APEC O1]
 gi|115514393|gb|ABJ02468.1| putative type II secretion protein GspD [Escherichia coli APEC O1]
          Length = 686

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|293603728|ref|ZP_06686147.1| type II secretion system protein D [Achromobacter piechaudii ATCC
           43553]
 gi|292817902|gb|EFF76964.1| type II secretion system protein D [Achromobacter piechaudii ATCC
           43553]
          Length = 611

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 5/181 (2%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--S 306
           GV  R      L+ L++    + LA P +   + + AS   G +    T +++ G    S
Sbjct: 380 GVTSRNDLSAALNLLQKRGKTKVLANPKIRVRNMEKASIKIGEKVPVVTTTNANGVVTES 439

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELP 363
           V   D G++L   P +     + +++  EVS     V     G +     R A+T +   
Sbjct: 440 VNYQDVGLILQVEPRISLSNEVSVKVSMEVSNLKGEVKTAGGGVVYPMSTRNAETVMTAR 499

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G T VLAGL+     +   G+P LS +  LG+LF   +   + TEI +  TP + + +A
Sbjct: 500 DGETQVLAGLVNQQQTRSSSGVPGLSVMGWLGSLFGGQKKTDQNTEIVLLLTPHIERSMA 559

Query: 424 M 424
           +
Sbjct: 560 L 560


>gi|34499269|ref|NP_903484.1| type II secretion system protein [Chromobacterium violaceum ATCC
           12472]
 gi|34105120|gb|AAQ61476.1| probable type II secretion system protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 708

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 14/193 (7%)

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-------- 312
            ALE+      +A P L  +  + A    G +    T +   G    +   Y        
Sbjct: 475 QALEQEAQGNLVASPQLVTMDNEKAKIVIGQEIGVPTATYPAGTNGTSNAPYSTYDRKTV 534

Query: 313 GVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           G  L  TP +   G I ++I      + +  +   AG  P++  R  DT V +  GG + 
Sbjct: 535 GFGLEITPQISEGGTIRMKISQAADSIDQTTLSAAAG--PTFNRRTLDTVVTVGDGGLVA 592

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
           L GL ++     ++ +PLL  IP++G LF+     R++T + I   P +++  +  R ++
Sbjct: 593 LGGLTQETTSNAEDKVPLLGDIPVIGNLFKYQGKERKKTNLMIFIRPTIIRDEIGNRAVA 652

Query: 429 RPDDHYSVEDDAK 441
                Y +ED A+
Sbjct: 653 GERYGYVMEDAAR 665


>gi|28896907|ref|NP_796512.1| general secretion pathway protein D [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365906|ref|ZP_05778400.1| general secretion pathway protein D [Vibrio parahaemolyticus K5030]
 gi|260877807|ref|ZP_05890162.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AN-5034]
 gi|260895544|ref|ZP_05904040.1| general secretion pathway protein D [Vibrio parahaemolyticus
           Peru-466]
 gi|260902568|ref|ZP_05910963.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AQ4037]
 gi|28805115|dbj|BAC58396.1| general secretion pathway protein D precursor [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088533|gb|EFO38228.1| general secretion pathway protein D [Vibrio parahaemolyticus
           Peru-466]
 gi|308089966|gb|EFO39661.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AN-5034]
 gi|308109694|gb|EFO47234.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AQ4037]
 gi|308113427|gb|EFO50967.1| general secretion pathway protein D [Vibrio parahaemolyticus K5030]
          Length = 675

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 21/165 (12%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPT 321
           L+ P++T +    ASF  G     + V   TG+T+ + +D           G+ L   P 
Sbjct: 461 LSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQ 515

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + 
Sbjct: 516 INEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALES 574

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +  +PLL  IP+LG LF+++    ++  + +      +KP  +RD
Sbjct: 575 ESKVPLLGDIPVLGHLFKSTSTQTQKRNLMV-----FIKPTIIRD 614


>gi|229525096|ref|ZP_04414501.1| MSHA biogenesis protein MshL [Vibrio cholerae bv. albensis VL426]
 gi|229338677|gb|EEO03694.1| MSHA biogenesis protein MshL [Vibrio cholerae bv. albensis VL426]
          Length = 554

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 110/261 (42%), Gaps = 38/261 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSE-------- 241
           QV L+  I EV      Q G   S   SS+G S +  +     D  G  ++         
Sbjct: 272 QVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSSGNPITSALPGLDAI 331

Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
               GG  +V  V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y T
Sbjct: 332 GSLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 389

Query: 298 VSSS---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR-----IQTEVSEPVIG 342
             SS   TG  +  + D        G+ L  TP +   G + L      I+ E    +I 
Sbjct: 390 DLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKIIT 449

Query: 343 VNAGD--MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            N+ +  +P  R  +R++D+ +    G  +V+ GL+K +  +    +P L  +P LG LF
Sbjct: 450 YNSQEITLPLARSSIRESDSVIRAKDGDVVVIGGLMKTNTIERVSKVPFLGDVPGLGNLF 509

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RN     ++TE+ I   P +V
Sbjct: 510 RNISNQTQKTELVILLKPTVV 530


>gi|86146572|ref|ZP_01064894.1| Type II secretory pathway, component EpsD [Vibrio sp. MED222]
 gi|85835629|gb|EAQ53765.1| Type II secretory pathway, component EpsD [Vibrio sp. MED222]
          Length = 674

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 21/165 (12%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPT 321
           L+ P++T +    ASF  G     + V   TG+T+ +++D           G+ L   P 
Sbjct: 460 LSSPSITVMDNGEASFIVG-----EEVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQ 514

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     + L+I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + 
Sbjct: 515 INEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALES 573

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +  +P L  IP+LG LF+++    E+  + +      +KP  +RD
Sbjct: 574 ESKVPFLGDIPVLGHLFKSTSTQVEKKNLMV-----FIKPTIIRD 613


>gi|188026465|ref|ZP_02962178.2| hypothetical protein PROSTU_04276 [Providencia stuartii ATCC 25827]
 gi|188019786|gb|EDU57826.1| hypothetical protein PROSTU_04276 [Providencia stuartii ATCC 25827]
          Length = 348

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 12/231 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV +   I    R  L+++G +  +   S  P+ S    +  ++ S  G F++  + +
Sbjct: 124 KQQVQITAHIISSSRTALQELGLEWGMLSGS--PNNSRYQRYN-RYDSSSGQFNLLRLGE 180

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
               E  L+ALE+   +  +A P L A     AS   G +  Y  V+S+   T V   D 
Sbjct: 181 GLL-ELKLNALEKENLLSIIASPRLMASHKHPASIQQGSEIPY--VTSTEKKTHVQFKDA 237

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVL 370
            + +  TPT+     + L ++   + P   +   D     + K +  T+V + +  T++L
Sbjct: 238 VLGMEVTPTLSRGDHVELLLKISHNSPDKAITTSDEHYLAINKQEIATSVTIRNNETLIL 297

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFLV 419
            G+ +   ++ + G+P LS IP+LG LF N+    +R    +FI  TP L+
Sbjct: 298 GGIFQQKQEKTETGLPFLSNIPLLGKLFTNTGEHIDRRVLVVFI--TPKLI 346


>gi|152998114|ref|YP_001342949.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
 gi|150839038|gb|ABR73014.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
          Length = 393

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 9/228 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--AADFGGKFVSEGGDFSVKGVLD 252
           Q+ +   IA+V R    Q G        S G   S   A D G    +   DFS  G   
Sbjct: 169 QIEISAQIAQVSRTAQSQFGVNWQ-AKLSDGVRSSIGGAVDLGALTPTTSLDFSSIGGSG 227

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +    L  +E       +++P +    G  A   SG +  Y+TVS      S+     
Sbjct: 228 LLAL--TLDMMESEGLANVVSKPKIVTSEGLPARIESGTEVPYQTVSDD--KVSIEFRQA 283

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            ++L  TP V   G I L +   + +  +G     +PS +  +  T V + +  T+VL G
Sbjct: 284 VLMLEVTPFVKDSGHILLSLT--IHQDSVGDLVNGVPSLKTNRLKTQVVVKNQETLVLGG 341

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +++  + +  +P  S IP LG LF+     +E+ E+ +  TP L++
Sbjct: 342 VFREERFESESRVPFFSDIPWLGELFKRQSEQQEKVELLVFITPKLLQ 389


>gi|167045577|gb|ABZ10227.1| putative bacterial type II and III secretion system protein
           [uncultured marine crenarchaeote HF4000_APKG10I20]
          Length = 648

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 21/243 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSE------------ 241
           QV ++  I E+ +   +++G    +     G P+ +  + F  +F+ +            
Sbjct: 408 QVLIEAKIVEISKTFSQELGISWGLVNPEPGFPTVTGNSTFDTQFLVDLRPTVDIATGNV 467

Query: 242 -GGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
            G D  ++G L    +    L ALE++   R ++ P +T    + A   SG    Y+   
Sbjct: 468 AGFDSLIQGFLPGNIALNVRLEALEKSGKGRVISSPRVTTADNKEARVLSGRDIPYQV-- 525

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           +S    S+   +  + L  TP V S   I + I    +       A  +P+   ++  T 
Sbjct: 526 NSVEGNSIQFVNAELSLTVTPHVTSDNSIYMTIDATKNAADFAQLAAGIPTITRKEMHTE 585

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET--EIFIAATPF 417
           V + +G T VLAG+ +    + K+ +P  SK+P++G LFR   F+ ++T  E+ +  TP 
Sbjct: 586 VLVGNGETTVLAGIYESTSTENKKAVPWFSKLPLVGFLFR--AFDDKDTINELLVFITPT 643

Query: 418 LVK 420
           +V+
Sbjct: 644 IVE 646


>gi|167044898|gb|ABZ09565.1| putative bacterial type II and III secretion system protein
           [uncultured marine crenarchaeote HF4000_APKG8D22]
          Length = 637

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 21/243 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSE------------ 241
           QV ++  I E+ +   +++G    +     G P+ +  + F  +F+ +            
Sbjct: 397 QVLIEAKIVEISKTFSQELGISWGLVNPEPGFPTVTGNSTFDTQFLVDLRPTVDIATGNV 456

Query: 242 -GGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
            G D  ++G L    +    L ALE++   R ++ P +T    + A   SG    Y+   
Sbjct: 457 AGFDSLIQGFLPGNIALNVRLEALEKSGKGRVISSPRVTTADNKEARVLSGRDIPYQV-- 514

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           +S    S+   +  + L  TP V S   I + I    +       A  +P+   ++  T 
Sbjct: 515 NSVEGNSIQFVNAELSLTVTPHVTSDNSIYMTIDATKNAADFAQLAAGIPTITRKEMHTE 574

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET--EIFIAATPF 417
           V + +G T VLAG+ +    + K+ +P  SK+P++G LFR   F+ ++T  E+ +  TP 
Sbjct: 575 VLVGNGETTVLAGIYESTSTENKKAVPWFSKLPLVGFLFR--AFDDKDTINELLVFITPT 632

Query: 418 LVK 420
           +V+
Sbjct: 633 IVE 635


>gi|225077283|ref|ZP_03720482.1| hypothetical protein NEIFLAOT_02342 [Neisseria flavescens
           NRL30031/H210]
 gi|224951427|gb|EEG32636.1| hypothetical protein NEIFLAOT_02342 [Neisseria flavescens
           NRL30031/H210]
          Length = 710

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + A E     +T++ P +     + A   SG +  Y+  +SS GATS+T     + L  T
Sbjct: 542 ISASEEQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEAASS-GATSITFKKAVLGLTVT 600

Query: 320 PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G+I + ++     P+   V++        +  +T   +  GGT+++ G+ +++ 
Sbjct: 601 PNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEES 660

Query: 379 QQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLVKPV 422
                 +P+L  IP++G LF  R  R NR E  IFI  TP ++  V
Sbjct: 661 TNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFI--TPHIMDNV 704


>gi|315288713|gb|EFU48111.1| general secretion pathway protein D [Escherichia coli MS 110-3]
          Length = 681

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 454 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 512

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 513 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 570

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 571 LGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKEKRNLMV-----FIRPTILRD 622


>gi|270157060|ref|ZP_06185717.1| type II secretory pathway protein LspD [Legionella longbeachae
           D-4968]
 gi|289164527|ref|YP_003454665.1| type II protein secretion LspD [Legionella longbeachae NSW150]
 gi|269989085|gb|EEZ95339.1| type II secretory pathway protein LspD [Legionella longbeachae
           D-4968]
 gi|288857700|emb|CBJ11543.1| type II protein secretion LspD [Legionella longbeachae NSW150]
          Length = 786

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 112/259 (43%), Gaps = 34/259 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---HSITGSSSGPSKSFAADFGGKF 238
           K+V+  L+I    Q+ ++  +AE+ +D +  +G +   +  TG   G    FA       
Sbjct: 489 KRVIGQLDIKPA-QLLIEALVAEINQDDVNDLGIEWGSNQQTGKPGGFRNGFAIINSKTQ 547

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------ 292
           +++              F+  ++AL RA     L+ P++  +  + A    G Q      
Sbjct: 548 IAD--------------FQAQIYALARAHKANILSTPSVVVLDNRQAKILVGKQVSVAST 593

Query: 293 HLYKTVSSSTGATSVTTHD-YGVVLHF--TPTVLSPGRIGLRIQ--TEVSEPVIGVNAGD 347
           +       +T A+  TT D   V LH    P +     I ++I    +  +P     A  
Sbjct: 594 NYPNNAGGTTPASPYTTFDRVNVALHLYVRPQITRGNGIQMQIDQGNDTLDPPATAEASV 653

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P++R+    T+V + SG  +VL GL +D +      +P+L  +P +G LF+ +   RE+
Sbjct: 654 NPTFRISSIVTSVHVESGDIVVLGGLTQDRLDNDNNRLPVLGDLPGVGRLFKRNINTREK 713

Query: 408 TEIFIAATPFLVKPVAMRD 426
             + +      +KP+ +R+
Sbjct: 714 RVLMV-----FIKPIILRN 727


>gi|261209946|ref|ZP_05924246.1| MSHA biogenesis protein MshL [Vibrio sp. RC341]
 gi|260841011|gb|EEX67543.1| MSHA biogenesis protein MshL [Vibrio sp. RC341]
          Length = 551

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 21/197 (10%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           GG  +V  V+   SFE VL  +     +  L+ P +TA + Q A    G    Y T  SS
Sbjct: 333 GGQSNV--VVSSGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSS 390

Query: 302 ---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR-----IQTEVSEPVIGVNAG 346
              TG  +  + D        G+ L  TP +   G + L      I+ E     I  N+ 
Sbjct: 391 VVGTGDNAQASPDITLTPFFSGISLDVTPQIDDKGNVLLHVHPAVIEVEQQTKRITYNSQ 450

Query: 347 --DMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             ++P  R  +R++D+ +    G  +V+ GL+K +       +P L  +P LG LFRN+ 
Sbjct: 451 QIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDRVAKVPFLGDVPGLGHLFRNTS 510

Query: 403 FNREETEIFIAATPFLV 419
              ++TE+ I   P +V
Sbjct: 511 KQTQKTELVILLKPTVV 527


>gi|84386329|ref|ZP_00989357.1| Type II secretory pathway, component EpsD [Vibrio splendidus 12B01]
 gi|84378753|gb|EAP95608.1| Type II secretory pathway, component EpsD [Vibrio splendidus 12B01]
          Length = 674

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 49/250 (19%)

Query: 215 FQHSITGSSSG------------PSKSFAADFGGKFV-----SEGGDFS--------VKG 249
            Q+S TG+S G             + +   D  GKF+     +E GD+S        V G
Sbjct: 375 IQYSNTGASIGGVMVGLEEAKDSETTTAVYDSDGKFLRNETTTEEGDYSTLASALSGVNG 434

Query: 250 VLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                    +  ++ A+   +    L+ P++T +    ASF  G     + V   TG+T+
Sbjct: 435 AAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVG-----EEVPVLTGSTA 489

Query: 307 VTTHD----------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
            +++D           G+ L   P +     + L+I+ EVS  V+G N      +  R+ 
Sbjct: 490 GSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQL 548

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T+V +  G  +VL GL+ +   + +  +P L  IP+LG LF+++    E+  + +    
Sbjct: 549 NTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVEKKNLMV---- 604

Query: 417 FLVKPVAMRD 426
             +KP  +RD
Sbjct: 605 -FIKPTIIRD 613


>gi|295677888|ref|YP_003606412.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1002]
 gi|295437731|gb|ADG16901.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1002]
          Length = 572

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 23/242 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAA-------DFGGKFVSEGGDFS 246
           QV ++  I E  +   + +G + S+ G+S+ G S+           D   + +S G D +
Sbjct: 336 QVLIEAQIVEGEQGFSRNLGVRLSLAGTSADGTSRGLTGGTDGTVYDLSARPIS-GFDAA 394

Query: 247 VKGVLDRFSFETV------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             G L  F+          L ALE     + ++ P +       A    G +  Y+    
Sbjct: 395 TAG-LTLFAAHATRLLNIELSALESEGHGKIVSSPRVVTADRMKAIVEQGTELPYQ-AKV 452

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G + V      + L   P ++  GR+ L +  +V++  +G      P+   +   T V
Sbjct: 453 GQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRV 510

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFL 418
           E+  GGT+ + G+ + D +   E +P+L KIP+LGALFR+   R  R E  +FI  TP +
Sbjct: 511 EVEDGGTVSIGGIYETDDRDDVERVPVLGKIPVLGALFRHRTHRDTRSELAVFI--TPRV 568

Query: 419 VK 420
           V+
Sbjct: 569 VR 570


>gi|171059300|ref|YP_001791649.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
 gi|170776745|gb|ACB34884.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
          Length = 662

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 10/160 (6%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKT---VSSSTGATSVTTH-----DYGVVLHFTPTVL 323
           LA P + A + + A    G +    T       +G +SV T      D G+ L   P V 
Sbjct: 405 LASPRIRARNKEKARILVGDKVPVITNLITPQQSGQSSVITGSIQYVDVGIKLEVEPQVY 464

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQL 381
           + G +G+++  EVS     +      +Y++  R A T + L  G T ++AGL+ D  +  
Sbjct: 465 ADGDVGIKVNLEVSNIAKTITTSSGVAYQIGTRNATTALRLHDGETQMMAGLINDQDRST 524

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              +P L ++P++G LF ++  +  ++EI ++ TP +V+P
Sbjct: 525 ASKLPGLGQLPVIGRLFTSTNASGGKSEIVLSITPRIVRP 564


>gi|74316567|ref|YP_314307.1| putative Type II secretory pathway component PulD [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056062|gb|AAZ96502.1| putative Type II secretory pathway component PulD [Thiobacillus
           denitrificans ATCC 25259]
          Length = 581

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 21/192 (10%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--------- 306
           F   +  LE     + L+ P L A++ Q+A        +Y  V + T AT+         
Sbjct: 373 FTAAIDLLESFGKAKVLSSPKLMALNNQTALLKVVDNLVYFNVKADTTATANVGTTTTFT 432

Query: 307 --VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVN-AGDMPSYRVR 354
               T   G+V+  TP +   G + L ++  +S          P I V     +P  +VR
Sbjct: 433 TTPQTVPVGIVMTMTPQINENGMVSLTVRPTISRNVGFVRDPNPSIPVAIPNQVPVIQVR 492

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + ++ +++ SG T++L GL++DD    ++GIP LS+   +GA+F        +TE+ I  
Sbjct: 493 EMESLLQVRSGQTVILGGLIQDDSNNARDGIPGLSRPEGIGAVFGQHEQINSQTELVIFL 552

Query: 415 TPFLVKPVAMRD 426
            P +V   ++ D
Sbjct: 553 RPIVVANPSLED 564


>gi|207724227|ref|YP_002254624.1| general secretion pathway gspd-related protein [Ralstonia
           solanacearum MolK2]
 gi|206589440|emb|CAQ36401.1| general secretion pathway gspd-related protein [Ralstonia
           solanacearum MolK2]
          Length = 761

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328
           LA P + A + + A    G +  +  T S+STG  + SV   D G+ L   P++     +
Sbjct: 404 LANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEV 463

Query: 329 GLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            ++I  EVS     I   +G + +Y++  R A+T ++L  G T +LAGL+K         
Sbjct: 464 SMKINLEVSSLTNQITTRSGTV-AYQIGTRSANTVLKLHDGETQLLAGLIKTQQTSSAAR 522

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           IP L  IP+LG LF +   N    EI ++ TP +VKP
Sbjct: 523 IPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP 559


>gi|77917753|ref|YP_355568.1| putative type II secretion system protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77543836|gb|ABA87398.1| putative type II secretion system protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 779

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 3/134 (2%)

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           D GV L   P +     +   +  EVS   E     N     S    KA TT+ L +G  
Sbjct: 451 DVGVKLDIEPKIQLDDTVVTNLSLEVSGVTEKNTTANGSLALSISTTKAQTTLTLKNGER 510

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
            V+ GL++DD  + ++ IPLL  +P++G LF N   ++++ EI ++ TP +++ V + D 
Sbjct: 511 TVIGGLIRDDSTKTRKIIPLLGDLPLIGRLFTNHNKDKKKREILLSITPHILQNVDLPDR 570

Query: 428 SRPDDHYSVEDDAK 441
           +  D     E++ K
Sbjct: 571 TLTDIWSGSEEELK 584


>gi|193067486|ref|ZP_03048454.1| general secretion pathway protein GspD [Escherichia coli E110019]
 gi|192959443|gb|EDV89878.1| general secretion pathway protein GspD [Escherichia coli E110019]
          Length = 686

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|193734249|gb|ACF19898.1| PilQ [Kingella kingae]
          Length = 700

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 2/161 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E     +T++ P +     + A    G Q  Y T  SS G +S    D  + L  T
Sbjct: 532 LSAMETENLTKTISTPRVLTQDRKEAEIRQGTQIPY-TTRSSDGDSSTAFKDAVLSLKVT 590

Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +    +I L I     EP    VNA   P    R   T   +  G T+V+ G+ ++ +
Sbjct: 591 PRITPDSKIILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATLVVGGIYQEQM 650

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                 +PLL  IP+LG LF++   +R   E+    TP ++
Sbjct: 651 ANNVSKVPLLGDIPVLGNLFKSRSRSRSRNELLFFITPRIM 691


>gi|187250988|ref|YP_001875470.1| type II secretion system [rpteom [Elusimicrobium minutum Pei191]
 gi|186971148|gb|ACC98133.1| Putatively involved in type II secretion system [Elusimicrobium
           minutum Pei191]
          Length = 527

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 8/177 (4%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS---GGQHLYKTVSSSTGATSV 307
           LD  SF  VL +L      + L +P +  I+ Q A   S           +S +TG+T+V
Sbjct: 349 LDFSSFSIVLKSLLTRGEAKYLGKPKVVTINNQPAVIESTRDAAVGFASNLSGNTGSTNV 408

Query: 308 TTHD-----YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
            +        G+ L  TP V   G I L I+   S       +        R A T V +
Sbjct: 409 VSQTAERKTVGLTLKVTPQVNKEGYITLLIEPSYSSVANSAVSDGTKDTLNRSASTLVRV 468

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G T+VL GLL          +PLL  IP++G LF      +E T++ I  TP ++
Sbjct: 469 KNGQTVVLGGLLSSREILEDRKVPLLGDIPLIGWLFTQRSTTKETTDMVIFVTPTIL 525


>gi|226944981|ref|YP_002800054.1| type II and III secretion system protein [Azotobacter vinelandii
           DJ]
 gi|226719908|gb|ACO79079.1| type II and III secretion system protein [Azotobacter vinelandii
           DJ]
          Length = 614

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 128/282 (45%), Gaps = 43/282 (15%)

Query: 153 TIQDSQRAVELSET-FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           T++D+  AV L+E  FL+Q   N                    +V L++ + EV R  + 
Sbjct: 311 TMRDTPDAVHLAERLFLAQDQAN-------------------PEVVLELEVMEVSRKRIL 351

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFSFET--VLHALERATA 268
            +G Q   T           A+ G   VS  G    +G+  DR +F     L      + 
Sbjct: 352 DLGLQWPNTFG-------ILAEDGTSAVSILGQL--RGIDSDRINFSPSPTLKINANDSD 402

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321
           + TLA P L  +S +  +    G+ +    ++ST +T       ++T  D G+ L   PT
Sbjct: 403 VNTLASPVLR-VSNREQARIHIGERVPVVSATSTPSTQGPVITENITYLDVGLKLEVEPT 461

Query: 322 VLSPGRIGLRIQTEVSEP--VIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           +     + +++  EVS    +    AG +P     R A TT+ L +G T VLAGL+++D 
Sbjct: 462 IHLNDEVAIKVGLEVSNATQLTRTEAGTIPIQVDTRNAVTTLRLRNGETQVLAGLMRNDQ 521

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  + IP L  IP +G LF +++    ++E+ ++ TP +V+
Sbjct: 522 GKSGDRIPGLGDIPGIGRLFGSNKDTLSKSELVLSITPRIVR 563


>gi|254483140|ref|ZP_05096374.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2148]
 gi|214036662|gb|EEB77335.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2148]
          Length = 727

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 42/295 (14%)

Query: 176 YANSSSKKV----MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
           YA S   KV    ++ L++    QV ++ +I EV      + G + +        S S  
Sbjct: 442 YATSMQYKVIKTALDQLDVVAT-QVIIEASIIEVSLTDELRYGLEWTF-------SNSLG 493

Query: 232 ADFGGK-FVSE-GGDFSVKGVLDRFSF---------ETVLHALERATAIRTLAEPTLTAI 280
           AD+ G  F+S   G  S   ++  FS+           VL+AL   + +  ++ P++  +
Sbjct: 494 ADYDGSGFLSSIAGAESPASIVPGFSYTVTNSIGNVSAVLNALAEESLLNIISTPSVMVL 553

Query: 281 SGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
               A    G Q     + S TG+          S+T  D GV L   P+V + G I + 
Sbjct: 554 DNHYAYIHVGQQ--VPIIDSQTGSLANDTDRVTQSITYRDTGVKLDVRPSVNAGGLITMD 611

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +   V++      A    ++  R  ++ V + S  ++VL GL++++     +G+P L  +
Sbjct: 612 VAQSVTDVGEIDAATGQRAFLERNIESRVAVRSNESVVLGGLIRENSGTASQGVPWLHSV 671

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
           PI+G+LF         TE+ +  TP        R L   D+  SV ++ ++   N
Sbjct: 672 PIVGSLFGTDSARSNRTELLVIITP--------RALYNEDELRSVSEEMRSKIRN 718


>gi|207739033|ref|YP_002257426.1| general secretion pathway gspd-related protein [Ralstonia
           solanacearum IPO1609]
 gi|206592404|emb|CAQ59310.1| general secretion pathway gspd-related protein [Ralstonia
           solanacearum IPO1609]
          Length = 761

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328
           LA P + A + + A    G +  +  T S+STG  + SV   D G+ L   P++     +
Sbjct: 404 LANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEV 463

Query: 329 GLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            ++I  EVS     I   +G + +Y++  R A+T ++L  G T +LAGL+K         
Sbjct: 464 SMKINLEVSSLTNQITTRSGTV-AYQIGTRSANTVLKLHDGETQLLAGLIKTQQTSSAAR 522

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           IP L  IP+LG LF +   N    EI ++ TP +VKP
Sbjct: 523 IPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP 559


>gi|157162438|ref|YP_001459756.1| general secretion pathway protein D [Escherichia coli HS]
 gi|157068118|gb|ABV07373.1| general secretion pathway protein D [Escherichia coli HS]
          Length = 686

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|332973070|gb|EGK11007.1| type IV pilus biogenesis protein PilQ [Kingella kingae ATCC 23330]
          Length = 700

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 2/161 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E     +T++ P +     + A    G Q  Y T  SS G +S    D  + L  T
Sbjct: 532 LSAMETENLTKTISTPRVLTQDRKEAEIRQGTQIPY-TTRSSDGDSSTAFKDAVLSLKVT 590

Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +    +I L I     EP    VNA   P    R   T   +  G T+V+ G+ ++ +
Sbjct: 591 PRITPDSKIILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATLVVGGIYQEQM 650

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                 +PLL  IP+LG LF++   +R   E+    TP ++
Sbjct: 651 ANNVSKVPLLGDIPVLGNLFKSRSRSRSRNELLFFITPRIM 691


>gi|323978963|gb|EGB74043.1| general secretion pathway protein D [Escherichia coli TW10509]
          Length = 686

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|218706590|ref|YP_002414109.1| general secretion pathway protein D [Escherichia coli UMN026]
 gi|300900296|ref|ZP_07118475.1| general secretion pathway protein D [Escherichia coli MS 198-1]
 gi|331648754|ref|ZP_08349842.1| general secretion pathway protein D [Escherichia coli M605]
 gi|331664576|ref|ZP_08365482.1| general secretion pathway protein D [Escherichia coli TA143]
 gi|218433687|emb|CAR14602.1| general secretion pathway protein D precursor [Escherichia coli
           UMN026]
 gi|300356186|gb|EFJ72056.1| general secretion pathway protein D [Escherichia coli MS 198-1]
 gi|331042501|gb|EGI14643.1| general secretion pathway protein D [Escherichia coli M605]
 gi|331058507|gb|EGI30488.1| general secretion pathway protein D [Escherichia coli TA143]
          Length = 686

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|90580860|ref|ZP_01236662.1| putative fimbrial assembly protein [Vibrio angustum S14]
 gi|90437931|gb|EAS63120.1| putative fimbrial assembly protein [Vibrio angustum S14]
          Length = 574

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 7/164 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+       ++ P L   + ++A    G +  Y   SSS GATSV+     + L  T
Sbjct: 412 LSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVT 470

Query: 320 PTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           P +    ++ L +  EV++   G       G   S   ++  T V + +G T+VL G+ +
Sbjct: 471 PQITPDDKLVLDL--EVTQDNKGEDVPTGTGTAISIDTQRIGTQVLVNNGETVVLGGIYQ 528

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  +   +PLL  IP+LGALFR+      + E+ I  TP +V
Sbjct: 529 HSMTNVTRKVPLLGDIPVLGALFRHKMEQMGKRELLIFVTPKIV 572


>gi|315633544|ref|ZP_07888834.1| type IV pilus secretin PilQ [Aggregatibacter segnis ATCC 33393]
 gi|315477586|gb|EFU68328.1| type IV pilus secretin PilQ [Aggregatibacter segnis ATCC 33393]
          Length = 474

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y  V+  +G  SV   +  + L  T
Sbjct: 275 LTALERENNVEIIASPRLLTTNKKSASIKQGTELPYIMVNEKSGTQSVEFREAVLGLEVT 334

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    +I L +    + P   +    G++ S   ++ +T V    G TIVL G+  D 
Sbjct: 335 PHISLDKQILLDLIVSQNAPGSRVAYGLGEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 394

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I +  + +PLL  IP +  LF       ++ E+ I  TP +++
Sbjct: 395 ITKSLDKVPLLGDIPGIKHLFSKESDRHQKRELVIFVTPHILR 437


>gi|262273168|ref|ZP_06050984.1| type II secretory pathway component EpsD [Grimontia hollisae CIP
           101886]
 gi|262222746|gb|EEY74055.1| type II secretory pathway component EpsD [Grimontia hollisae CIP
           101886]
          Length = 671

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 8/155 (5%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSP 325
           L+ P+L  +  + ASF  G + +     S+TG+       +V   D GV L  TP +   
Sbjct: 459 LSSPSLMVLDNEEASFIVG-EEVPVVTGSTTGSNNDNPFQTVERKDVGVKLKITPQINEG 517

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
             + L I+ E+S  V+G +      +  R+  T+V       IVL+GL+ +   + ++ +
Sbjct: 518 DSVQLNIEQEISN-VLGASGAVDIRFGKRQLTTSVLAADQQMIVLSGLIDEQTNESEQKV 576

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           PLL  IP+LG LF+++   + +  + +   P +++
Sbjct: 577 PLLGDIPLLGHLFKSTSSGKTKRNLMLFIKPTIIR 611


>gi|324018098|gb|EGB87317.1| general secretion pathway protein D [Escherichia coli MS 117-3]
          Length = 686

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|320181011|gb|EFW55932.1| General secretion pathway protein D [Shigella boydii ATCC 9905]
          Length = 686

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|309785192|ref|ZP_07679823.1| general secretion pathway protein D [Shigella dysenteriae 1617]
 gi|308926312|gb|EFP71788.1| general secretion pathway protein D [Shigella dysenteriae 1617]
          Length = 681

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 454 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 512

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 513 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 570

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 571 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 622


>gi|209920436|ref|YP_002294520.1| putative type II secretion protein [Escherichia coli SE11]
 gi|256019113|ref|ZP_05432978.1| putative type II secretion protein [Shigella sp. D9]
 gi|332280218|ref|ZP_08392631.1| general secretion pathway protein D [Shigella sp. D9]
 gi|209913695|dbj|BAG78769.1| putative type II secretion protein [Escherichia coli SE11]
 gi|320201874|gb|EFW76449.1| General secretion pathway protein D [Escherichia coli EC4100B]
 gi|332102570|gb|EGJ05916.1| general secretion pathway protein D [Shigella sp. D9]
          Length = 686

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|191171834|ref|ZP_03033380.1| general secretion pathway protein GspD [Escherichia coli F11]
 gi|215488288|ref|YP_002330719.1| putative type II secretion protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312968706|ref|ZP_07782915.1| general secretion pathway protein D [Escherichia coli 2362-75]
 gi|190907869|gb|EDV67462.1| general secretion pathway protein GspD [Escherichia coli F11]
 gi|215266360|emb|CAS10797.1| putative type II secretion protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312286924|gb|EFR14835.1| general secretion pathway protein D [Escherichia coli 2362-75]
 gi|312947523|gb|ADR28350.1| general secretion pathway protein D precursor [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|320195111|gb|EFW69740.1| General secretion pathway protein D [Escherichia coli WV_060327]
          Length = 686

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|218708199|ref|YP_002415820.1| type II secretory pathway subunit EpsD [Vibrio splendidus LGP32]
 gi|218321218|emb|CAV17168.1| Type II secretory pathway, component EpsD [Vibrio splendidus LGP32]
          Length = 674

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 21/165 (12%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPT 321
           L+ P++T +    ASF  G     + V   TG+T+ +++D           G+ L   P 
Sbjct: 460 LSSPSITVMDNGEASFIVG-----EEVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQ 514

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     + L+I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + 
Sbjct: 515 INEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALES 573

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +  +P L  IP+LG LF+++    E+  + +      +KP  +RD
Sbjct: 574 ESKVPFLGDIPVLGHLFKSTSTQVEKKNLMV-----FIKPTIIRD 613


>gi|39995438|ref|NP_951389.1| general secretion pathway protein D [Geobacter sulfurreducens PCA]
 gi|39982201|gb|AAR33662.1| general secretion pathway protein D, putative [Geobacter
           sulfurreducens PCA]
          Length = 632

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 109/266 (40%), Gaps = 52/266 (19%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++  IAEV  D LK +G Q                  G   V   GD S   VLD F
Sbjct: 360 QVFVQALIAEVSLDKLKDVGVQ-----------------IGALAVGTQGDASGGAVLDPF 402

Query: 255 SFETV------------------------LHALERATAIRTLAEPT-LTAISGQSASFTS 289
           +F +                         + AL    AI  L+ P  LT+ + ++  F  
Sbjct: 403 NFLSATSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVG 462

Query: 290 GGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                    + +TG     S+   D G+ L  TP +     + L I  E+S   +  N G
Sbjct: 463 ENVPFLSQTNLTTGGISQQSIERKDTGITLRITPQISEGEYVKLDIYQEIS--AVKENKG 520

Query: 347 ---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
              D+ + + R A T V +    T+V+ GL++D   +    IPLL  IP+LG LF+    
Sbjct: 521 QANDLVTTK-RSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKST 579

Query: 404 NREETEIFIAATPFLVKPV-AMRDLS 428
            RE+T + I  TP +++    M D+S
Sbjct: 580 RREKTNLMIVLTPRIIRGAEEMNDVS 605


>gi|307634685|gb|ADI83160.2| type II secretion system lipoprotein GspD, putative [Geobacter
           sulfurreducens KN400]
          Length = 632

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 105/257 (40%), Gaps = 51/257 (19%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++  IAEV  D LK +G Q                  G   V   GD S   VLD F
Sbjct: 360 QVFVQALIAEVSLDKLKDVGVQ-----------------IGALAVGTQGDASGGAVLDPF 402

Query: 255 SFETV------------------------LHALERATAIRTLAEPT-LTAISGQSASFTS 289
           +F +                         + AL    AI  L+ P  LT+ + ++  F  
Sbjct: 403 NFLSATSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVG 462

Query: 290 GGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                    + +TG     S+   D G+ L  TP +     + L I  E+S   +  N G
Sbjct: 463 ENVPFLSQTNLTTGGISQQSIERKDTGITLRITPQISEGEYVKLDIYQEIS--AVKENKG 520

Query: 347 ---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
              D+ + + R A T V +    T+V+ GL++D   +    IPLL  IP+LG LF+    
Sbjct: 521 QANDLVTTK-RSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKST 579

Query: 404 NREETEIFIAATPFLVK 420
            RE+T + I  TP +++
Sbjct: 580 RREKTNLMIVLTPRIIR 596


>gi|301155450|emb|CBW14916.1| predicted fimbrial transporter [Haemophilus parainfluenzae T3T1]
          Length = 460

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 2/177 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   +      SV   +  + L  T
Sbjct: 276 LTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDTQSVEFREAVLGLEVT 335

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   +     ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 336 PHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 395

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           I +  + +PLL  IP +  LF       ++ E+ I  TP ++K     ++++ + H+
Sbjct: 396 ITKGIDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMAKKEKHF 452


>gi|170681179|ref|YP_001745227.1| general secretion pathway protein GspD [Escherichia coli SMS-3-5]
 gi|170518897|gb|ACB17075.1| general secretion pathway protein GspD [Escherichia coli SMS-3-5]
          Length = 686

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|83746420|ref|ZP_00943472.1| GspE-related protein [Ralstonia solanacearum UW551]
 gi|83726961|gb|EAP74087.1| GspE-related protein [Ralstonia solanacearum UW551]
          Length = 744

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328
           LA P + A + + A    G +  +  T S+STG  + SV   D G+ L   P++     +
Sbjct: 387 LANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEV 446

Query: 329 GLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            ++I  EVS     I   +G + +Y++  R A+T ++L  G T +LAGL+K         
Sbjct: 447 SMKINLEVSSLTNQITTRSGTV-AYQIGTRSANTVLKLHDGETQLLAGLIKTQQTSSAAR 505

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           IP L  IP+LG LF +   N    EI ++ TP +VKP
Sbjct: 506 IPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP 542


>gi|332529515|ref|ZP_08405473.1| type II and III secretion system protein [Hylemonella gracilis ATCC
           19624]
 gi|332041035|gb|EGI77403.1| type II and III secretion system protein [Hylemonella gracilis ATCC
           19624]
          Length = 509

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 2/126 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L   VS+S+GATS++     ++L  TP +   G + L +  +VS+  +G +     +
Sbjct: 375 GTELPYQVSTSSGATSISFRKANLMLEVTPQITPEGNVILEV--DVSKDSVGQDTQAGFA 432

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + ++    IP L  +P LGALFR      E+ E+
Sbjct: 433 IDTKHVKTQVLVENGGTVVIGGIYTQEERETVTKIPFLGDLPGLGALFRAKETRSEKREM 492

Query: 411 FIAATP 416
            +  TP
Sbjct: 493 LVFITP 498


>gi|325498531|gb|EGC96390.1| type II secretion protein GspD [Escherichia fergusonii ECD227]
          Length = 686

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|324119774|gb|EGC13654.1| general secretion pathway protein D [Escherichia coli E1167]
          Length = 686

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|331684607|ref|ZP_08385199.1| general secretion pathway protein D [Escherichia coli H299]
 gi|331078222|gb|EGI49428.1| general secretion pathway protein D [Escherichia coli H299]
          Length = 686

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|293412339|ref|ZP_06655062.1| general secretion pathway protein D [Escherichia coli B354]
 gi|293449309|ref|ZP_06663730.1| general secretion pathway protein D [Escherichia coli B088]
 gi|291322399|gb|EFE61828.1| general secretion pathway protein D [Escherichia coli B088]
 gi|291469110|gb|EFF11601.1| general secretion pathway protein D [Escherichia coli B354]
          Length = 679

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 452 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 510

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 511 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 568

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 569 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 620


>gi|157157281|ref|YP_001464424.1| general secretion pathway protein D [Escherichia coli E24377A]
 gi|188495193|ref|ZP_03002463.1| general secretion pathway protein D [Escherichia coli 53638]
 gi|191169103|ref|ZP_03030864.1| general secretion pathway protein GspD [Escherichia coli B7A]
 gi|193062082|ref|ZP_03043178.1| general secretion pathway protein GspD [Escherichia coli E22]
 gi|260869724|ref|YP_003236126.1| putative type II secretion protein GspD [Escherichia coli O111:H-
           str. 11128]
 gi|300824048|ref|ZP_07104169.1| general secretion pathway protein D [Escherichia coli MS 119-7]
 gi|300905916|ref|ZP_07123648.1| general secretion pathway protein D [Escherichia coli MS 84-1]
 gi|301304138|ref|ZP_07210254.1| general secretion pathway protein D [Escherichia coli MS 124-1]
 gi|307310403|ref|ZP_07590051.1| general secretion pathway protein D [Escherichia coli W]
 gi|309794068|ref|ZP_07688493.1| general secretion pathway protein D [Escherichia coli MS 145-7]
 gi|331669777|ref|ZP_08370622.1| general secretion pathway protein D [Escherichia coli TA271]
 gi|331679035|ref|ZP_08379707.1| general secretion pathway protein D [Escherichia coli H591]
 gi|157079311|gb|ABV19019.1| general secretion pathway protein D [Escherichia coli E24377A]
 gi|188490392|gb|EDU65495.1| general secretion pathway protein D [Escherichia coli 53638]
 gi|190900855|gb|EDV60643.1| general secretion pathway protein GspD [Escherichia coli B7A]
 gi|192932302|gb|EDV84900.1| general secretion pathway protein GspD [Escherichia coli E22]
 gi|257766080|dbj|BAI37575.1| predicted type II secretion protein GspD [Escherichia coli O111:H-
           str. 11128]
 gi|300402269|gb|EFJ85807.1| general secretion pathway protein D [Escherichia coli MS 84-1]
 gi|300523438|gb|EFK44507.1| general secretion pathway protein D [Escherichia coli MS 119-7]
 gi|300840551|gb|EFK68311.1| general secretion pathway protein D [Escherichia coli MS 124-1]
 gi|306909298|gb|EFN39793.1| general secretion pathway protein D [Escherichia coli W]
 gi|308122475|gb|EFO59737.1| general secretion pathway protein D [Escherichia coli MS 145-7]
 gi|309703398|emb|CBJ02737.1| type II secretion system protein D [Escherichia coli ETEC H10407]
 gi|315062282|gb|ADT76609.1| type II secretion system lipoprotein D [Escherichia coli W]
 gi|315253339|gb|EFU33307.1| general secretion pathway protein D [Escherichia coli MS 85-1]
 gi|323178670|gb|EFZ64246.1| general secretion pathway protein D [Escherichia coli 1180]
 gi|323377134|gb|ADX49402.1| general secretion pathway protein D [Escherichia coli KO11]
 gi|331062690|gb|EGI34604.1| general secretion pathway protein D [Escherichia coli TA271]
 gi|331073100|gb|EGI44423.1| general secretion pathway protein D [Escherichia coli H591]
          Length = 686

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|320661717|gb|EFX29125.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 686

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|254038140|ref|ZP_04872198.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
 gi|226839764|gb|EEH71785.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
 gi|323971766|gb|EGB66992.1| general secretion pathway protein D [Escherichia coli TA007]
          Length = 686

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|222034685|emb|CAP77427.1| hypothetical type II secretion proteinGspD [Escherichia coli LF82]
          Length = 679

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 452 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 510

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 511 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 568

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 569 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 620


>gi|17223826|gb|AAL10693.1| hypothetical type II secretion protein [Escherichia coli ETEC
           H10407]
          Length = 616

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 389 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 447

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 448 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 505

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 506 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 557


>gi|52426025|ref|YP_089162.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308077|gb|AAU38577.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 478

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   ++ +A P L   + +SAS   G +  Y  V+       V   +  + L  T
Sbjct: 295 LTALEQENNVKIIASPRLLTTNKKSASIKQGTEIPYVAVNRKNDTEHVEFREAVLGLEVT 354

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           P +     I L +    + P  G N     G++ S   ++ +T V    G TIVL G+  
Sbjct: 355 PHISKDNSILLDLIVSQNSP--GANIVYGNGNLISIDKQEINTQVFAKDGETIVLGGVFN 412

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           D I + ++ +P+L  IP++  LF       ++ E+ I  TP ++K
Sbjct: 413 DTITKSEDKVPILGDIPLIKHLFSKESEKHQKRELVIFVTPHILK 457


>gi|323966493|gb|EGB61926.1| general secretion pathway protein D [Escherichia coli M863]
 gi|327251745|gb|EGE63431.1| general secretion pathway protein D [Escherichia coli STEC_7v]
          Length = 686

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|323960851|gb|EGB56471.1| general secretion pathway protein D [Escherichia coli H489]
          Length = 686

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|331659244|ref|ZP_08360186.1| general secretion pathway protein D [Escherichia coli TA206]
 gi|331053826|gb|EGI25855.1| general secretion pathway protein D [Escherichia coli TA206]
          Length = 686

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|306816695|ref|ZP_07450827.1| general secretion pathway protein D precursor [Escherichia coli
           NC101]
 gi|305850260|gb|EFM50719.1| general secretion pathway protein D precursor [Escherichia coli
           NC101]
          Length = 686

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|301326853|ref|ZP_07220153.1| general secretion pathway protein D [Escherichia coli MS 78-1]
 gi|300846528|gb|EFK74288.1| general secretion pathway protein D [Escherichia coli MS 78-1]
          Length = 686

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|110643200|ref|YP_670930.1| type II secretion protein GspD [Escherichia coli 536]
 gi|194436907|ref|ZP_03069007.1| general secretion pathway protein GspD [Escherichia coli 101-1]
 gi|218550223|ref|YP_002384014.1| general secretion pathway protein D [Escherichia fergusonii ATCC
           35469]
 gi|218555536|ref|YP_002388449.1| general secretion pathway protein D [Escherichia coli IAI1]
 gi|218696673|ref|YP_002404340.1| general secretion pathway protein D precursor [Escherichia coli
           55989]
 gi|254162916|ref|YP_003046024.1| type II secretion protein GspD [Escherichia coli B str. REL606]
 gi|291284343|ref|YP_003501161.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
           CB9615]
 gi|300931844|ref|ZP_07147141.1| general secretion pathway protein D [Escherichia coli MS 187-1]
 gi|300950837|ref|ZP_07164722.1| general secretion pathway protein D [Escherichia coli MS 116-1]
 gi|300958340|ref|ZP_07170482.1| general secretion pathway protein D [Escherichia coli MS 175-1]
 gi|110344792|gb|ABG71029.1| hypothetical type II secretion protein GspD [Escherichia coli 536]
 gi|194424389|gb|EDX40376.1| general secretion pathway protein GspD [Escherichia coli 101-1]
 gi|218353405|emb|CAU99456.1| general secretion pathway protein D precursor [Escherichia coli
           55989]
 gi|218357764|emb|CAQ90408.1| general secretion pathway protein D precursor [Escherichia
           fergusonii ATCC 35469]
 gi|218362304|emb|CAQ99925.1| general secretion pathway protein D precursor [Escherichia coli
           IAI1]
 gi|242378520|emb|CAQ33305.1| pulD [Escherichia coli BL21(DE3)]
 gi|253974817|gb|ACT40488.1| GspD, hypothetical type II secretion protein [Escherichia coli B
           str. REL606]
 gi|253978972|gb|ACT44642.1| GspD, hypothetical type II secretion protein [Escherichia coli
           BL21(DE3)]
 gi|284922988|emb|CBG36080.1| type II secretion system protein D [Escherichia coli 042]
 gi|290764216|gb|ADD58177.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
           CB9615]
 gi|300314983|gb|EFJ64767.1| general secretion pathway protein D [Escherichia coli MS 175-1]
 gi|300449873|gb|EFK13493.1| general secretion pathway protein D [Escherichia coli MS 116-1]
 gi|300460267|gb|EFK23760.1| general secretion pathway protein D [Escherichia coli MS 187-1]
 gi|320656346|gb|EFX24253.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320666867|gb|EFX33843.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
           LSU-61]
 gi|324114991|gb|EGC08956.1| general secretion pathway protein D [Escherichia fergusonii B253]
 gi|332344919|gb|AEE58253.1| general secretion pathway protein GspD [Escherichia coli UMNK88]
          Length = 686

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|293406579|ref|ZP_06650505.1| hypothetical protein ECGG_01885 [Escherichia coli FVEC1412]
 gi|291426585|gb|EFE99617.1| hypothetical protein ECGG_01885 [Escherichia coli FVEC1412]
          Length = 679

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 452 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 510

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 511 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 568

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 569 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 620


>gi|323183550|gb|EFZ68947.1| general secretion pathway protein D [Escherichia coli 1357]
          Length = 686

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|307293364|ref|ZP_07573210.1| general secretion pathway protein D [Sphingobium chlorophenolicum
           L-1]
 gi|306881430|gb|EFN12646.1| general secretion pathway protein D [Sphingobium chlorophenolicum
           L-1]
          Length = 716

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 20/178 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------- 305
           F  +++A++  T    L+ P++  +  Q AS   G Q     V  +TG            
Sbjct: 464 FGAIINAVKSDTDSNILSTPSVMTLDNQKASILVGQQ-----VPITTGEALSQNFDNQFR 518

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVEL 362
           +V   D G+ L   P + + G I L ++ EVS    PV   N  D+   + R+ +TTV +
Sbjct: 519 TVQRQDVGIKLEVKPQINTGGAIKLFLKQEVSSVAGPVSNSNT-DLIINK-REIETTVTV 576

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             G  + L GLL D+ ++  E IPLLS IP +G LF++   +R +T + +   P +++
Sbjct: 577 DDGEILALGGLLDDNERKTIERIPLLSDIPGIGELFKSRSKSRTKTNLMVFIRPTILR 634


>gi|256024452|ref|ZP_05438317.1| general secretion pathway protein D precursor [Escherichia sp.
           4_1_40B]
          Length = 686

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|218701737|ref|YP_002409366.1| general secretion pathway protein D [Escherichia coli IAI39]
 gi|227887667|ref|ZP_04005472.1| type II secretion protein GspD [Escherichia coli 83972]
 gi|301019909|ref|ZP_07184044.1| general secretion pathway protein D [Escherichia coli MS 196-1]
 gi|218371723|emb|CAR19573.1| general secretion pathway protein D precursor [Escherichia coli
           IAI39]
 gi|227835063|gb|EEJ45529.1| type II secretion protein GspD [Escherichia coli 83972]
 gi|299882007|gb|EFI90218.1| general secretion pathway protein D [Escherichia coli MS 196-1]
 gi|307555055|gb|ADN47830.1| general secretion pathway protein GspD [Escherichia coli ABU 83972]
          Length = 686

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|281180003|dbj|BAI56333.1| putative type II secretion protein [Escherichia coli SE15]
          Length = 659

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 432 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 490

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 491 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 548

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 549 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 600


>gi|218691255|ref|YP_002399467.1| general secretion pathway protein D [Escherichia coli ED1a]
 gi|218428819|emb|CAR09618.1| general secretion pathway protein D precursor [Escherichia coli
           ED1a]
          Length = 686

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|323188610|gb|EFZ73895.1| general secretion pathway protein D [Escherichia coli RN587/1]
          Length = 686

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|315297663|gb|EFU56940.1| general secretion pathway protein D [Escherichia coli MS 16-3]
          Length = 681

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 454 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 512

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 513 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 570

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 571 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 622


>gi|269967259|ref|ZP_06181323.1| putative type III secretion protein YscC [Vibrio alginolyticus 40B]
 gi|269828115|gb|EEZ82385.1| putative type III secretion protein YscC [Vibrio alginolyticus 40B]
          Length = 624

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 16/233 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248
           + ++ + ++I ++  + L Q+G      G S G ++        D     V+ G   + K
Sbjct: 292 QSRIEVALSIVDISANDLSQLGVDWR-AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFK 350

Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            +LD  +   +L     LE   + + ++ PTL       A   +      K V   T A 
Sbjct: 351 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 410

Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              T  YG +L   P ++     +   I L +  E    +      D+PS R  +  T  
Sbjct: 411 EEVT--YGTLLRIVPRIVGDRFAARPEINLSLHLEDGAKIADGGVDDLPSVRKTEISTLA 468

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412
            +  G ++++ G+ +D++      +PLL  IP LGALFR N+   R    +FI
Sbjct: 469 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTKRRTVRMFI 521


>gi|170765481|ref|ZP_02900292.1| general secretion pathway protein GspD [Escherichia albertii
           TW07627]
 gi|170124627|gb|EDS93558.1| general secretion pathway protein GspD [Escherichia albertii
           TW07627]
          Length = 686

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627


>gi|300993062|ref|ZP_07180170.1| general secretion pathway protein D [Escherichia coli MS 200-1]
 gi|301048227|ref|ZP_07195262.1| general secretion pathway protein D [Escherichia coli MS 185-1]
 gi|300299921|gb|EFJ56306.1| general secretion pathway protein D [Escherichia coli MS 185-1]
 gi|300305186|gb|EFJ59706.1| general secretion pathway protein D [Escherichia coli MS 200-1]
 gi|324005480|gb|EGB74699.1| general secretion pathway protein D [Escherichia coli MS 57-2]
 gi|324011870|gb|EGB81089.1| general secretion pathway protein D [Escherichia coli MS 60-1]
          Length = 681

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 454 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 512

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 513 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 570

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 571 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 622


>gi|198283019|ref|YP_002219340.1| type IV pilus secretin PilQ [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665348|ref|YP_002425223.1| fimbrial assembly protein PilQ, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247540|gb|ACH83133.1| type IV pilus secretin PilQ [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517561|gb|ACK78147.1| fimbrial assembly protein PilQ, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 784

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 7/163 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+     + ++ P +     + A    G +  Y+  +SS GAT+V+     + L  T
Sbjct: 607 LQALQADNRAKIISSPKVLTQDNEKAVIEQGQEIPYQQATSS-GATAVSFKKAVLSLDVT 665

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKD 376
           P +   G+I L +     +P     A  MPS      ++  T + + +G T+V+ G+  D
Sbjct: 666 PHISPNGKITLDVDARNDQPNY---AQAMPSGIPINTQQVKTKLLVNNGQTVVIGGIYTD 722

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              Q + G+PLL  IP+LG LF++   +  +TE+ +  TP +V
Sbjct: 723 STTQNETGVPLLRDIPLLGWLFKSHINSVAKTELLVFLTPKVV 765


>gi|300973519|ref|ZP_07172233.1| general secretion pathway protein D [Escherichia coli MS 45-1]
 gi|300410735|gb|EFJ94273.1| general secretion pathway protein D [Escherichia coli MS 45-1]
 gi|315291309|gb|EFU50669.1| general secretion pathway protein D [Escherichia coli MS 153-1]
          Length = 681

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 454 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 512

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 513 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 570

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 571 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 622


>gi|91224449|ref|ZP_01259711.1| putative type III secretion protein YscC [Vibrio alginolyticus
           12G01]
 gi|91190791|gb|EAS77058.1| putative type III secretion protein YscC [Vibrio alginolyticus
           12G01]
          Length = 624

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 16/233 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248
           + ++ + ++I ++  + L Q+G      G S G ++        D     V+ G   + K
Sbjct: 292 QSRIEVALSIVDISANDLSQLGVDWR-AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFK 350

Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            +LD  +   +L     LE   + + ++ PTL       A   +      K V   T A 
Sbjct: 351 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 410

Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              T  YG +L   P ++     +   I L +  E    +      D+PS R  +  T  
Sbjct: 411 EEVT--YGTLLRIVPRIVGDRFAARPEINLSLHLEDGAKIADGGVDDLPSVRKTEISTLA 468

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412
            +  G ++++ G+ +D++      +PLL  IP LGALFR N+   R    +FI
Sbjct: 469 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTKRRTVRMFI 521


>gi|262284505|gb|ACY41042.1| VscC [Vibrio alginolyticus]
          Length = 624

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 16/233 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248
           + ++ + ++I ++  + L Q+G      G S G ++        D     V+ G   + K
Sbjct: 292 QSRIEVALSIVDISANDLSQLGVDWR-AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFK 350

Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            +LD  +   +L     LE   + + ++ PTL       A   +      K V   T A 
Sbjct: 351 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 410

Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              T  YG +L   P ++     +   I L +  E    +      D+PS R  +  T  
Sbjct: 411 EEVT--YGTLLRIVPRIVGDRFAARPEINLSLHLEDGAKIADGGVDDLPSVRKTEISTLA 468

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412
            +  G ++++ G+ +D++      +PLL  IP LGALFR N+   R    +FI
Sbjct: 469 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTKRRTVRMFI 521


>gi|303248632|ref|ZP_07334887.1| type II and III secretion system protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489982|gb|EFL49906.1| type II and III secretion system protein [Desulfovibrio
           fructosovorans JJ]
          Length = 629

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 18/177 (10%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            E  L AL     ++ LA PT+T +  Q+A F   G  +  T +S  G T+V   +  + 
Sbjct: 437 LEAQLTALAEDNKVKILASPTITTMENQTA-FVENGMDVPYTSTSQNG-TNVQFANATLR 494

Query: 316 LHFTPTVLSPGRIGLRI-----QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           L   P V+    + ++I     Q + S  V G      P    R+  + + +    TIV+
Sbjct: 495 LEILPHVVDGTNLRMKITVKDDQVDTSRTVDG-----NPYIYKRETQSNLVVEDRETIVI 549

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLV--KPVA 423
           +GL++D +     G+P L  IP LG  F  +NS   RE+  IFI  TP ++  KP+A
Sbjct: 550 SGLVRDTVSDGNSGVPFLRDIPGLGWAFKSKNSSVEREQMLIFI--TPIILKEKPIA 604


>gi|91776807|ref|YP_546563.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91710794|gb|ABE50722.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 723

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 3/163 (1%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
           F     L ALE     + ++ P +T  + Q A    G Q  ++  +SS GAT+V   +  
Sbjct: 554 FLLNLELSALETDQRGKIVSSPRVTTANQQKAIIEQGTQIPFQQATSS-GATAVQFKNAS 612

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L  TP +    +I + +  EV +  +GV   ++PS   ++  T V + +G T VL G+
Sbjct: 613 LSLEVTPQITPDEKIIMDL--EVKKDKVGVVFNNVPSIDTQRVQTQVLVANGETAVLGGI 670

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            +   +   + +P    +P LG +F+      ++TE+ I  TP
Sbjct: 671 YEQTERNDVDKVPFFGDLPFLGNVFKRRVKQSDKTELLIFITP 713


>gi|167855583|ref|ZP_02478343.1| type II secretory pathway, component HofQ [Haemophilus parasuis
           29755]
 gi|167853274|gb|EDS24528.1| type II secretory pathway, component HofQ [Haemophilus parasuis
           29755]
          Length = 420

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 5/170 (2%)

Query: 259 VLH----ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           VLH    ALE    I  +A P L     + AS   G +  Y   S     T +   +  +
Sbjct: 246 VLHLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKKKEITDIEFREAVL 305

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L  TP +    +I L +    + P   +N   M +   ++ +T V    G TIVL G+ 
Sbjct: 306 GLEVTPHISKQNQILLDLAISQNSPNNQMN-NMMATIDKQEINTQVLAKHGETIVLGGIF 364

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           +  I + ++ +PLL  IP++  LF  +R    + E+ I  TP++VK   M
Sbjct: 365 QHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKRELVIFVTPYIVKSEKM 414


>gi|18139873|gb|AAL60184.1|AF426313_4 hypothetical type II secretion protein GspD [Escherichia coli]
          Length = 616

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 389 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 447

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 448 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 505

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 506 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 557


>gi|126643202|ref|YP_001086186.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii
           ATCC 17978]
          Length = 695

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311
           F  +  L AL+       ++ P +     Q+A   +G Q  Y++ ++S   ++ TT   D
Sbjct: 521 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKD 580

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367
             + L+ TP++   G+I +++  ++S+  +   AG  P+  +       +T V + +G T
Sbjct: 581 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 635

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++L G+ +      +  +P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 636 VILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 694


>gi|82778251|ref|YP_404600.1| putative type II secretion protein [Shigella dysenteriae Sd197]
 gi|81242399|gb|ABB63109.1| putative type II secretion protein [Shigella dysenteriae Sd197]
          Length = 611

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 384 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 442

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 443 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 500

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 501 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 552


>gi|47155035|emb|CAE85234.1| GspD, hypothetical type II secretion protein [Escherichia coli]
          Length = 616

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 389 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 447

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 448 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 505

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 506 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 557


>gi|307721768|ref|YP_003892908.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979861|gb|ADN09896.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 565

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 160/377 (42%), Gaps = 44/377 (11%)

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           D V      + +FGK  G  ++++I  D   + N  + +  ++ +++  +   I + N+R
Sbjct: 52  DAVSAKGTLLKIFGKKTGNTSILVIYTDN-SIQNYHVYVNENLGYIQKMIN--IIEPNLR 108

Query: 138 VEMV-SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ- 195
           +  V +D+ V+ G+ +   D +R  E+    L + G N      ++K+M+L      ++ 
Sbjct: 109 LSKVGNDSTVIAGVFKDPHDKKRIYEI----LQKGGIN------TEKLMDLTKTQKVNKM 158

Query: 196 VTLKVTIAEVRRDILKQIG------FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247
           +  K+ +  V     K +G      F +    +++  + + +A F G  +   G+F+   
Sbjct: 159 IRTKLYLIAVDNQKAKDLGGVTGLSFFNKYVNATANAAAANSATFSGFLLDNLGNFTTST 218

Query: 248 -KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGAT 305
              VL   +F      L+       L +  L     ++A+F  GG+    T ++ + G  
Sbjct: 219 GNSVLATLNF------LQTKGITNILDDTVLITTEDKNATFRVGGELYIPTGITQNVGTA 272

Query: 306 ---SVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA--GD---MPSYRVR 354
               V   +YG+ L  T   +       I + IQ    +  I  N   GD   +PS+  +
Sbjct: 273 PTIQVEAKEYGLKLTLTSKFMQTNGYMHINVDIQDSAIDANIAHNVSLGDGISIPSFVSK 332

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T V + S   I L G L  +  + +E +PL   IPILG LF++   N   T++    
Sbjct: 333 NIKTNVVVKSEQVIALGGRLHSENSKSEEKVPLFGDIPILGELFKHKIENLGTTDLIFLL 392

Query: 415 TPFLVKPVAMRDLSRPD 431
            P +V   A  D+   D
Sbjct: 393 VPEIVD--ANEDIDDTD 407


>gi|15603090|ref|NP_246162.1| ComE [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721580|gb|AAK03309.1| ComE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 444

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 4/165 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   I  +A P L   + +SAS   G +  Y        + SV   +  + L  T
Sbjct: 262 LTALEREKHIEIIASPRLLTTNKKSASIKQGTEIPYVMKRGKDKSESVEFREAVLGLDVT 321

Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +     I L +   Q  +  PV+  + G++ S   ++ +T V    G TIVL G+  D
Sbjct: 322 PHISKDNTILLDLLITQNTLGAPVV-YDKGEIVSIDKQEINTQVVAQDGETIVLGGVFHD 380

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            + +    +PLL  +P+L  +F       ++ E+ I  TP ++KP
Sbjct: 381 TMTKGVNKVPLLGDLPLLKHVFSQKTERHQKRELVIFVTPHIIKP 425


>gi|283786644|ref|YP_003366509.1| T3SS structural protein EscC [Citrobacter rodentium ICC168]
 gi|15723915|gb|AAL06362.1|AF311901_14 EscC [Citrobacter rodentium]
 gi|282950098|emb|CBG89732.1| T3SS structural protein EscC [Citrobacter rodentium ICC168]
          Length = 512

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 39/227 (17%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----AADFGGKFVSEGGDFSVKG 249
           Q+ + V+I +V  + L+Q+G   S T ++   S +F      A+     +S   +F ++ 
Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQSSIAFNSSAAQANISSSVISNASNFMIR- 333

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307
                     ++AL++ +  + L++P++  ++   A         Y  VS    A+  S+
Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382

Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQ---TEVSEPVIGVNAGDM-PSY 351
           T+   G +L  TP +L               R+ L IQ     V++  I  NAG + P  
Sbjct: 383 TS---GTLLRVTPRILDDTSNSLTGKRRERVRLLLDIQDGNQSVNQSNIQ-NAGSLLPEV 438

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           +  +  T   L +G +++L G ++D     K+GIPLLS IP++G+LF
Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485


>gi|148874|gb|AAA24947.1| ORF 1 [Haemophilus influenzae]
          Length = 371

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + +SAS   G +  Y   ++     SV   +  + L  T
Sbjct: 193 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 252

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I L +    + P   V  G  ++ S   ++ +T V    G TIVL G+  D 
Sbjct: 253 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 312

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I + ++ +PLL  IP++  LF       ++ E+ I  TP ++K
Sbjct: 313 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 355


>gi|90580158|ref|ZP_01235965.1| MSHA biogenesis protein MshL [Vibrio angustum S14]
 gi|90438460|gb|EAS63644.1| MSHA biogenesis protein MshL [Vibrio angustum S14]
          Length = 548

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 29/214 (13%)

Query: 235 GGKFVSE--GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           GG  +SE  GG  ++K  +   +F  V+  L     +  L+ P +TA + Q A    GG 
Sbjct: 320 GGNAISELLGGQTNIK--ITDGNFSAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGD 377

Query: 293 HLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----S 337
             + T  SS+  +          S+T    G+ L  TP +   G + L +   V      
Sbjct: 378 EYFVTDVSSSNVSGDNNNVSPDVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVQNE 437

Query: 338 EPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           +  I V         +    +R++D+ +   +G  +V+ GL+K  I      +P L  IP
Sbjct: 438 QKTIEVGTAKPMVLPLAKSTIRESDSIIHARTGDVVVIGGLMKSSINDQVSKVPFLGDIP 497

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +G LFR+    +++TE+ I     L+KP  + D
Sbjct: 498 GIGNLFRHINKVKKKTELVI-----LLKPTVVTD 526


>gi|332851353|ref|ZP_08433405.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013150]
 gi|332868764|ref|ZP_08438387.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013113]
 gi|332730069|gb|EGJ61397.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013150]
 gi|332733193|gb|EGJ64390.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013113]
          Length = 712

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311
           F  +  L AL+       ++ P +     Q+A   +G Q  Y++ ++S   ++ TT   D
Sbjct: 538 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKD 597

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367
             + L+ TP++   G+I +++  ++S+  +   AG  P+  +       +T V + +G T
Sbjct: 598 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 652

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++L G+ +      +  +P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 653 VILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 711


>gi|319944026|ref|ZP_08018306.1| type II and III secretion system protein [Lautropia mirabilis ATCC
           51599]
 gi|319742787|gb|EFV95194.1| type II and III secretion system protein [Lautropia mirabilis ATCC
           51599]
          Length = 837

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 104/263 (39%), Gaps = 42/263 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--FSVK---- 248
           QV ++  I EV+ D + ++G Q     S  G +       GG   S GG    SV     
Sbjct: 419 QVYIESLIVEVKADTVSEMGIQWQFGTSRPGQNSVV----GGTNFSSGGSNILSVTQNPA 474

Query: 249 ----------GVLDR---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                     GV+            +   +  ALE  T     A P L  +  + A    
Sbjct: 475 ALAAAGGLNVGVVRNGVSLFGQTFLNLGLLARALEAETNSNIRATPNLLTLDNEEARIII 534

Query: 290 G-------GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           G       GQ+     + S+   ++   D G +L   P V   G + + I  E+S  V  
Sbjct: 535 GQNVPFVTGQYATTNNTLSSPFQTIERKDVGTMLRVRPQVSEGGTVKMEIAQEISAVVDT 594

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             +  + + R R  D+ V +  G  +VL GL++D ++     +PLL  IP LG LFR   
Sbjct: 595 TQSAGIITNR-RAIDSNVLVDDGQIVVLGGLIEDTVEGGISKVPLLGDIPGLGRLFRYDN 653

Query: 403 FNREETEIFIAATPFLVKPVAMR 425
             R +T + I      ++PV +R
Sbjct: 654 RKRVKTNLLI-----FLRPVVLR 671


>gi|241759496|ref|ZP_04757600.1| fimbrial assembly protein PilQ [Neisseria flavescens SK114]
 gi|241320278|gb|EER56611.1| fimbrial assembly protein PilQ [Neisseria flavescens SK114]
          Length = 710

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + A E     +T++ P +     + A   SG +  Y+  SSS GATS+T     + L  T
Sbjct: 542 ISASEEQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEASSS-GATSITFKKAVLGLTVT 600

Query: 320 PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G+I + ++     P+   V++        +  +T   +  GGT+++ G+ +++ 
Sbjct: 601 PNITPDGQIIMTVKINRDTPIDCTVDSLMTKCINTKHLNTQAMVEDGGTLIVGGIYEEES 660

Query: 379 QQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLVKPV 422
                 +P+L  IP++G LF  R  R NR E  IFI  TP ++  V
Sbjct: 661 TNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFI--TPRIMDNV 704


>gi|169794485|ref|YP_001712278.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii
           AYE]
 gi|213158943|ref|YP_002320941.1| fimbrial assembly protein PilQ [Acinetobacter baumannii AB0057]
 gi|215482074|ref|YP_002324256.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB307-0294]
 gi|301345422|ref|ZP_07226163.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB056]
 gi|301510068|ref|ZP_07235305.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB058]
 gi|301595996|ref|ZP_07241004.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB059]
 gi|169147412|emb|CAM85273.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii
           AYE]
 gi|213058103|gb|ACJ43005.1| fimbrial assembly protein PilQ [Acinetobacter baumannii AB0057]
 gi|213988167|gb|ACJ58466.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB307-0294]
          Length = 721

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311
           F  +  L AL+       ++ P +     Q+A   +G Q  Y++ ++S   ++ TT   D
Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKD 606

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367
             + L+ TP++   G+I +++  ++S+  +   AG  P+  +       +T V + +G T
Sbjct: 607 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 661

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++L G+ +      +  +P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 662 VILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720


>gi|90414685|ref|ZP_01222656.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum 3TCK]
 gi|90324227|gb|EAS40802.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum 3TCK]
          Length = 670

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 90/181 (49%), Gaps = 21/181 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311
           +  +++A+   +    L+ P++T +    ASF  G     + V   TG+TS +++D    
Sbjct: 440 WTMLVNAVATDSNSNILSSPSITVMDNGEASFIVG-----EEVPVVTGSTSSSSNDNPFQ 494

Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                  G+ L+ TP +     + L+I+ EVS  V+G +      +  R+ +T+V +  G
Sbjct: 495 TVERKEVGIKLNVTPQINEGDSVQLKIEQEVSS-VLGASGAVDVRFAKRQINTSVLVQDG 553

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             I L GL+ ++ ++ +  +P+L  IP LG LF+++     +T + +      +KP  +R
Sbjct: 554 QMIALGGLISEETKESESKVPILGDIPFLGFLFKSTNTTTAKTNLMV-----FIKPTIIR 608

Query: 426 D 426
           D
Sbjct: 609 D 609


>gi|193078561|gb|ABO13584.2| putative outer membrane protein (ComQ) [Acinetobacter baumannii
           ATCC 17978]
          Length = 721

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311
           F  +  L AL+       ++ P +     Q+A   +G Q  Y++ ++S   ++ TT   D
Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKD 606

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367
             + L+ TP++   G+I +++  ++S+  +   AG  P+  +       +T V + +G T
Sbjct: 607 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 661

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++L G+ +      +  +P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 662 VILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720


>gi|78484595|ref|YP_390520.1| type II and III secretion system protein [Thiomicrospira crunogena
           XCL-2]
 gi|78362881|gb|ABB40846.1| Type II secretion pathway protein D [Thiomicrospira crunogena
           XCL-2]
          Length = 703

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 20/218 (9%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           +I G++  P+    A  G    +  G+ S  G      +  ++ AL   +    L+ PTL
Sbjct: 399 TIIGNAGNPAAQANA-IGTGVNAAFGEVSADGT----GWGALIRALNSDSEANILSTPTL 453

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRI 328
             +  + A    G +  ++T S ++            ++   + G+ L  TP +     +
Sbjct: 454 LTLDNEEAEIVVGKEVPFQTGSYTSTGTSSTPTNPFNTIERKNVGLSLKVTPQINEGDEV 513

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I  E+S+ +   +A D+ + + R+  T V +  G  IVL GLL +   ++++ +P L
Sbjct: 514 FLEINQEISDVIPKGDAVDVQTSK-RQIKTRVIVGDGNVIVLGGLLTEKETEVEKKVPGL 572

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
             IP LGALFR++   RE+  + +      ++PV +RD
Sbjct: 573 GDIPGLGALFRSTSNEREKVNLMV-----FLRPVIVRD 605


>gi|152986624|ref|YP_001348780.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
 gi|150961782|gb|ABR83807.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
          Length = 758

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 24/248 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------ADFGGKFVSEGG 243
           Q+ ++  I E+  ++ + +G Q ++ G  +    SFA           A   GK  +E  
Sbjct: 341 QLLVEAAIVELTGELNEALGVQWAMRGGHAVGGTSFAGSGLSIGTLLGALQSGKPPAELP 400

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G    ++T S +T 
Sbjct: 401 DGAIVGLGSR-DFGALITALTRNSNSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTTN 459

Query: 304 A-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352
           +       T+V   D GV L  TP +     + L I+ E+S       +     D+ + +
Sbjct: 460 SEGSSNPFTTVERKDIGVTLKVTPHIGDDRMLRLEIEQEISSIAPAATLAAKTVDLVTNK 519

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +TV    G  IVL GL++DD+ +    +PLL  IP +G LFR++R  R +  + +
Sbjct: 520 -RSIKSTVLADDGQVIVLGGLIQDDVVRSDSRVPLLGDIPGVGRLFRSTRDTRVKRNLMV 578

Query: 413 AATPFLVK 420
              P +V+
Sbjct: 579 FLRPSIVR 586


>gi|260556918|ref|ZP_05829135.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
           19606]
 gi|260409524|gb|EEX02825.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
           19606]
          Length = 721

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311
           F  +  L AL+       ++ P +     Q+A   +G Q  Y++ ++S   ++ TT   D
Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKD 606

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367
             + L+ TP++   G+I +++  ++S+  +   AG  P+  +       +T V + +G T
Sbjct: 607 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 661

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++L G+ +      +  +P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 662 VILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720


>gi|297581573|ref|ZP_06943496.1| general secretion pathway protein D [Vibrio cholerae RC385]
 gi|297534411|gb|EFH73249.1| general secretion pathway protein D [Vibrio cholerae RC385]
          Length = 674

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 13/156 (8%)

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330
           +T +    ASF  G + +     SS G+       +V   + G+ L   P +     + L
Sbjct: 464 ITVMDNGEASFIVG-EEVPVITGSSAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQL 522

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           +I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  
Sbjct: 523 KIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGD 581

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           IP+LG LFR++    E+  + +      +KP  +RD
Sbjct: 582 IPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIRD 612


>gi|332873777|ref|ZP_08441719.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6014059]
 gi|332738000|gb|EGJ68885.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6014059]
          Length = 712

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311
           F  +  L AL+       ++ P +     Q+A   +G Q  Y++ ++S   ++ TT   D
Sbjct: 538 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKD 597

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367
             + L+ TP++   G+I +++  ++S+  +   AG  P+  +       +T V + +G T
Sbjct: 598 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 652

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++L G+ +      +  +P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 653 VILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 711


>gi|238787297|ref|ZP_04631096.1| General secretion pathway protein D [Yersinia frederiksenii ATCC
           33641]
 gi|238724559|gb|EEQ16200.1| General secretion pathway protein D [Yersinia frederiksenii ATCC
           33641]
          Length = 657

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 15/199 (7%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTH 310
           +++ +  AL        LA P++  +    A F  G +       +T ++     S++  
Sbjct: 424 NWDGLFTALATNLNNNILATPSIVTLDNMEAEFNVGQEVPILTSTQTTTTDKVYNSISRQ 483

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGGT 367
             GV+L   P +     + L I+ EVS       +N  ++ S +  R  +  V + SG T
Sbjct: 484 SVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDINTHNLGSVFNKRIVNNAVLVKSGET 543

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +V+ GLL   + +    +PLL  IP +GALFR S+   E++ + +      +KP  +R+ 
Sbjct: 544 VVVGGLLDKKVNKTINKVPLLGDIPFIGALFRQSKEKVEKSNLIL-----FIKPTILRET 598

Query: 428 SRPDDHYSVEDDAKAFFFN 446
           S   D+  V  D    + N
Sbjct: 599 S---DYTQVTTDKYTAYNN 614


>gi|184159708|ref|YP_001848047.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
           ACICU]
 gi|239501963|ref|ZP_04661273.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
           AB900]
 gi|183211302|gb|ACC58700.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
           ACICU]
 gi|322509621|gb|ADX05075.1| HofQ [Acinetobacter baumannii 1656-2]
 gi|323519639|gb|ADX94020.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 721

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311
           F  +  L AL+       ++ P +     Q+A   +G Q  Y++ ++S   ++ TT   D
Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKD 606

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367
             + L+ TP++   G+I +++  ++S+  +   AG  P+  +       +T V + +G T
Sbjct: 607 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 661

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++L G+ +      +  +P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 662 VILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720


>gi|229521807|ref|ZP_04411225.1| general secretion pathway protein D [Vibrio cholerae TM 11079-80]
 gi|229341401|gb|EEO06405.1| general secretion pathway protein D [Vibrio cholerae TM 11079-80]
          Length = 674

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 13/156 (8%)

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330
           +T +    ASF  G + +     SS G+       +V   + G+ L   P +     + L
Sbjct: 464 ITVMDNGEASFIVG-EEVPVITGSSAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQL 522

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           +I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  
Sbjct: 523 KIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGD 581

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           IP+LG LFR++    E+  + +      +KP  +RD
Sbjct: 582 IPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIRD 612


>gi|157377398|ref|YP_001475998.1| type IV pilus secretin PilQ [Shewanella sediminis HAW-EB3]
 gi|157319772|gb|ABV38870.1| type IV pilus secretin PilQ [Shewanella sediminis HAW-EB3]
          Length = 682

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 3/177 (1%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  + D    +  L ALE+      +A P +   S Q A++   G  +    +SS+GA
Sbjct: 503 FHVAKLADGTVLDMELSALEKEDKGEIIASPRIMT-SNQKAAYIEQGVEIPYLEASSSGA 561

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
            +++     + L  TP +    R+   L I  +    V+    G   S   ++  T V +
Sbjct: 562 ATISFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKVVATPLGSAVSIDTQRIGTQVLV 621

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             G TIVL G+ +  +      +P+L  IP +G LFR++       E+ I  TP ++
Sbjct: 622 DHGETIVLGGIYQQQLINRVSKVPVLGDIPFVGFLFRSTTDENNRQELLIFVTPKII 678


>gi|209518484|ref|ZP_03267306.1| type II and III secretion system protein [Burkholderia sp. H160]
 gi|209501117|gb|EEA01151.1| type II and III secretion system protein [Burkholderia sp. H160]
          Length = 684

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 28/251 (11%)

Query: 190 IAGED----QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GD 244
           IA +D    +V L+V + EV  D L  +G     + + S PS     D  G+        
Sbjct: 336 IAAQDLPDPEVILEVKVLEVSHDRLTDLGIAWPNSFTVSTPS---TVDTWGELHHLPINA 392

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTV 298
            +V G+    +F+         T    LA P++ A + + A    G +          + 
Sbjct: 393 LNVSGLSATANFKLT------DTDANLLASPSIRARNKEKARILIGDKVPVISSSSTPST 446

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------YR 352
           S  + A ++   D G+ L   P V     +G+++  EVS     +++ +  +      Y 
Sbjct: 447 SGPSYAQTIQYLDVGIKLEVEPQVYRDADVGMKLNLEVSNITNTISSSNSTTGLTSLAYE 506

Query: 353 V--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R A T++ +  G + +L GL++D+ +   + +P L ++P+LG LF N   + ++TEI
Sbjct: 507 IGTRSASTSLRVHDGESQILGGLIQDEDRLTADKVPGLGQLPVLGRLFSNHNGDHKKTEI 566

Query: 411 FIAATPFLVKP 421
            +  TP +V+P
Sbjct: 567 VLEITPHIVRP 577


>gi|138046|sp|P03666|G4P_BPF1 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|14983|emb|CAA23875.1| unnamed protein product [Enterobacteria phage f1]
          Length = 426

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S GG F   G+ +       + AL+  +  + L+ P +  +SGQ  S  S GQ++     
Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSI-SVGQNVPFITG 296

Query: 300 SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
             TG +        +V   + G+ +   P  ++ G I L I ++         A D+ + 
Sbjct: 297 RVTGESANVNNPFQTVERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN 356

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   TTV L  G T++L GL          G+P LSKIP++G LF +   + EE+ ++
Sbjct: 357 Q-RSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLY 415

Query: 412 IAATPFLVKPVAMRDL 427
           +     LVK   +R L
Sbjct: 416 V-----LVKATIVRAL 426


>gi|308271769|emb|CBX28377.1| hypothetical protein N47_G37010 [uncultured Desulfobacterium sp.]
          Length = 526

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 9/206 (4%)

Query: 221 GSSSGPSKSFAADFGGKF--VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           GS+S  S+ F  +F       + G    + G +     E  L AL+    +  L+ P++T
Sbjct: 309 GSTSLSSQGFGINFPASMSDAASGTLGLMFGTIGGNILEMQLSALQNNGKLNILSSPSIT 368

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            +  Q+A +T  G+ +   V+  TG T     SV   D  + L   P V+    + + + 
Sbjct: 369 TLDNQTA-YTENGERI-PYVTEETGTTGSITKSVKFEDVVLRLEIKPHVIDSKNLKMEVL 426

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            + +E     N    P    ++  TT+ + +G TIV++GL K   Q  +  +P+L  +P+
Sbjct: 427 VKKNEVDNSRNVLGNPYIIKKETKTTLIVKNGETIVISGLTKQKKQDSENSVPVLRDMPL 486

Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
            G +F+ +  ++   E+ I  TP ++
Sbjct: 487 FGRMFKGTGKSKSMEEVLIFITPTIL 512


>gi|146328722|ref|YP_001209267.1| type IV fimbrial pore PilQ [Dichelobacter nodosus VCS1703A]
 gi|146232192|gb|ABQ13170.1| type IV fimbrial pore PilQ [Dichelobacter nodosus VCS1703A]
          Length = 734

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 15/167 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+       ++ P +    G  A   SG +  Y T+    G+      +  + L  T
Sbjct: 560 LQALQNEGRSEVISSPRVVTQDGNQAKVMSGQEIPYSTLDDK-GSVQTDYKEALLSLEVT 618

Query: 320 PTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           P V    R+ + I+ +      SE V+G      P+      +T VE+ +G TIVL G+ 
Sbjct: 619 PRVTPNDRVNMEIEIKKDRVNWSEQVLG-----QPAIDKNLLNTKVEVANGETIVLGGIY 673

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFLV 419
           + +    +  +PLL  IP++G +F+N+  +F + E  IFI  TP ++
Sbjct: 674 EQEQSLSENKVPLLGDIPVVGNVFKNTNKKFTKNELLIFI--TPRVI 718


>gi|138047|sp|P03664|G4P_BPFD RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|8489183|gb|AAF75602.1|AF217317_5 morphogenetic protein IV [Filamentous phage cloning vector fd-tet]
 gi|215404|gb|AAA32312.1| IV [Enterobacteria phage fd]
 gi|8698959|gb|AAF78531.1| protein IV [Filamentous phage display vector fMCS1]
 gi|21667075|gb|AAM73892.1| morphogenetic protein IV [Filamentous phage display vector f8-5]
 gi|21667089|gb|AAM73904.1| morphogenetic protein IV [Filamentous phage display vector c8-4]
 gi|223541|prf||0812197E DNA,phage
          Length = 426

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S GG F   G+ +       + AL+  +  + L+ P +  +SGQ  S  S GQ++     
Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSI-SVGQNVPFITG 296

Query: 300 SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
             TG +        +V   + G+ +   P  ++ G I L I ++         A D+ + 
Sbjct: 297 RVTGESANVNNPFQTVERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN 356

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   TTV L  G T++L GL          G+P LSKIP++G LF +   + EE+ ++
Sbjct: 357 Q-RSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLY 415

Query: 412 IAATPFLVKPVAMRDL 427
           +     LVK   +R L
Sbjct: 416 V-----LVKATIVRAL 426


>gi|85711535|ref|ZP_01042593.1| Type II secretory pathway, component PulJ [Idiomarina baltica
           OS145]
 gi|85694687|gb|EAQ32627.1| Type II secretory pathway, component PulJ [Idiomarina baltica
           OS145]
          Length = 404

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 18/196 (9%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           A    G+  +  G  S +G+L     +  L A+E+      +A P +   + Q A    G
Sbjct: 216 AVPAAGRLKANVGKLS-EGLL----LDLELSAMEQDNEAEIIARPKIFTSNQQPAYIEQG 270

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDM 348
            +  Y   S+++GAT+V      + L  TP + S   +   L I        +    G  
Sbjct: 271 TEFPY-VESAASGATAVKFKKAVMGLRVTPQITSNDYVMLDLTITQNTRGDTVSTPTGPA 329

Query: 349 PSYRVRKADTTVELPSGGTIVLAGL-----LKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            +   ++  T V + SG TIVL G+     LKDD      G+P+LS +P +G LF+N R 
Sbjct: 330 VAIDTQEMATRVLVKSGETIVLGGIFQQYELKDDT-----GVPILSSLPFVGNLFKNQRE 384

Query: 404 NREETEIFIAATPFLV 419
             E+ E+ I  TP L+
Sbjct: 385 QSEKRELVIFVTPTLL 400


>gi|192359937|ref|YP_001980940.1| fimbrial assembly protein PilQ [Cellvibrio japonicus Ueda107]
 gi|190686102|gb|ACE83780.1| fimbrial assembly protein PilQ [Cellvibrio japonicus Ueda107]
          Length = 714

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 4/179 (2%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  +V  + D    +  L ALE +     +++P +     Q A   SG +  Y+  S S
Sbjct: 533 AGSIAVGVLTDSVFLDMELSALETSGYAEIVSQPKVITSDKQKAVIKSGKEIAYQETSPS 592

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTV 360
            G T+    +  ++L   P +    RI + +   V++  +G +    +PS  V +  T V
Sbjct: 593 -GGTTTGFKEAVLMLEVVPQITPDNRIIMDLF--VTKDSVGEITQQGVPSLDVTRLQTKV 649

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +G T+VL G+   +  + +  +P+L  IP LG LF+ +  N+ +TE+ I  TP L+
Sbjct: 650 LVNNGQTVVLGGVFSLESTKGESKVPVLGDIPYLGRLFKRTVDNQFKTELLIFVTPKLI 708


>gi|62185517|ref|YP_220302.1| general secretion pathway protein D [Chlamydophila abortus S26/3]
 gi|62148584|emb|CAH64356.1| probable general secretion pathway protein D [Chlamydophila abortus
           S26/3]
          Length = 753

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 23/219 (10%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SP 325
           +R  A P++  ++ Q+ +  +  + +   VS+           YG+++   P +      
Sbjct: 537 VRINASPSVVTMN-QTPARIAIVEEMSIAVSADKEKAQYNRAQYGIMIKMLPVINVGDED 595

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G+  + ++T+++    G NA + P    R     V +P G T+++ GL        ++GI
Sbjct: 596 GKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVIIGGLRCKHASDSQDGI 655

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKPVAMRDL-------SRPDDH---- 433
           P L +IP +G LF  +     +TE+F+  TP  L  P+  ++        SRP ++    
Sbjct: 656 PFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILDNPIEKKERHEEAILSSRPGENTEFR 715

Query: 434 ---YSVEDDAKAFF--FNRVNKIYGPKEASEVEGQNYKG 467
              ++ E+ AKA       ++ I  P  AS+V+G  Y G
Sbjct: 716 QALFAGEEAAKAAHKKLEFISAIELP--ASQVQGLEYDG 752


>gi|11991134|gb|AAG42220.1| unknown [Shewanella putrefaciens 200]
          Length = 258

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 12/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310
           F  ++ A+   T    LA P +T +  Q ASF  G +    T S+++   S     V   
Sbjct: 10  FGALIQAVSSDTNSNVLATPXITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERK 69

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + GV L   P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL
Sbjct: 70  EVGVKLKVVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 127

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GL+ + +Q+  + +  L  IP+LG L       + +  + I      +KP  +RD
Sbjct: 128 GGLINEXVQESVQKVLSLGDIPVLGHLSNLPPVXKTKKNLMI-----FIKPTIIRD 178


>gi|187479017|ref|YP_787041.1| type IV pilus assembly protein (partial) [Bordetella avium 197N]
 gi|115423603|emb|CAJ50142.1| putative type IV pilus assembly protein (partial) [Bordetella avium
           197N]
          Length = 117

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 47/76 (61%)

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P  R RKADT VEL  G   +++GL+    +     IPLL  +PI+G+ FR+ ++++E+
Sbjct: 2   IPVLRKRKADTMVELGDGEGFMISGLVSRQTKASVNKIPLLGDLPIIGSFFRSVQYSQED 61

Query: 408 TEIFIAATPFLVKPVA 423
            E+ I   P L +P+A
Sbjct: 62  NELVIVVPPRLRQPIA 77


>gi|254442891|ref|ZP_05056367.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198257199|gb|EDY81507.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 842

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 87/218 (39%), Gaps = 42/218 (19%)

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302
           +V G ++  +    + AL + +    L+ P +T +SG  A      +  Y T  S T   
Sbjct: 591 NVIGNINSVNLNVAIRALSQQSGSDLLSAPKVTVLSGNEAKINVSQEFRYPTRYSDTESD 650

Query: 303 ----------GATSVT----------THDYGVVLHFTPTV----------LSPGRIGLRI 332
                     G+  VT          T + GV L  TP V          L+P       
Sbjct: 651 VGSTSGSLTGGSAGVTITPGTPEDFVTRNVGVELAVTPIVEEDDYSITLDLNPRVTEFEG 710

Query: 333 QTEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             E   P I ++ G           P + VR+ +T V +  G T+V+ G+ ++D+  + +
Sbjct: 711 FVEYGGPSIAISGGRTVKTPSGFYQPIFAVREVETKVTIWDGATVVMGGMTREDVVTVND 770

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            IP L  IP +G LFR+   +  +  + I  T  LV P
Sbjct: 771 KIPFLGDIPFVGRLFRSEGESSAKRNLLIFVTANLVSP 808


>gi|78186891|ref|YP_374934.1| Type II secretory pathway component PulD-like [Chlorobium luteolum
           DSM 273]
 gi|78166793|gb|ABB23891.1| Type II secretory pathway component PulD-like protein [Chlorobium
           luteolum DSM 273]
          Length = 588

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 10/160 (6%)

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-DYGVVLHFTPTVLS 324
           ++ I  +A PTLT +    + F SG Q +   V+ S  ++ ++ + + GV +H  P  ++
Sbjct: 346 SSKIDVIARPTLTGMLNIDSEFFSGNQ-IDAAVAGSADSSPISINKEIGVTMHVRPNEIT 404

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRV------RKADTTVELPSGGTIVLAGLLKDDI 378
             ++ L +  EVS   +     D  +Y+        K  T V++  G T++L+GL + + 
Sbjct: 405 RNKVKLHV--EVSRSFLDTTDKDKITYQYMVTTSNTKVTTDVDIAFGETMILSGLYEREA 462

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              ++G+P+L  IP+L  LF        +  + I  TP++
Sbjct: 463 VDTRDGVPILQDIPLLQYLFSKKTERLFQRSVIILLTPYI 502


>gi|158521058|ref|YP_001528928.1| general secretion pathway protein D [Desulfococcus oleovorans Hxd3]
 gi|158509884|gb|ABW66851.1| general secretion pathway protein D [Desulfococcus oleovorans Hxd3]
          Length = 799

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 5/179 (2%)

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSST 302
           V G ++  +   V+ A ++   ++ L+ P +     Q A+ T G    Y     T SS  
Sbjct: 480 VVGGIEYPNLAAVVRAFKKDKDVQILSTPQIMTTDNQEATITVGKNIPYLTKIGTTSSEE 539

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVE 361
             ++    D G+ L   P +     I L I+ E+++   +   + D P+   R   T V 
Sbjct: 540 TYSNYEYKDVGISLKIKPQINENRLIRLDIEQELTKLDQLTTVSLDRPATLKRGITTNVI 599

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +    TIV+ GL+ D + +++  +P L  IP LG LF+    + E+T + +  TP ++K
Sbjct: 600 VHDEHTIVIGGLIDDSMSRVEYKVPCLGDIPFLGWLFKGLSRSSEKTNLLVFLTPHVIK 658


>gi|253995615|ref|YP_003047679.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera mobilis
           JLW8]
 gi|253982294|gb|ACT47152.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera mobilis
           JLW8]
          Length = 610

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 110/268 (41%), Gaps = 44/268 (16%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGK----------FVSEGG 243
           QV ++ TI EVR     Q G   S +  S+S     F    G +          F +   
Sbjct: 312 QVLIEATIVEVRLSDSFQAGIDWSRLNNSASNSGFQFRQQLGAQTNGINATGNTFTTTAN 371

Query: 244 DFSVK-------GVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            F V        G L+  S        ++ LE+  + + L+ P L  ++ Q+A       
Sbjct: 372 AFGVATNAGFVAGYLNPVSKIGNIAASINLLEQFGSTKVLSSPKLMVLNNQTAVLKVVDN 431

Query: 293 HLYKTVSSSTGATSV------------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
            +Y TV S     SV             T   GVV+  TP +     + + I+  VS  V
Sbjct: 432 LVYFTVQSQQSQGSVGGGILSTVTTTPNTVPVGVVMSVTPQINDLSNVNINIRPTVSR-V 490

Query: 341 IGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +G              +P  +VR+ ++ +++ SG T VL GL++DD+    + +P LSK+
Sbjct: 491 LGFKKDPNPNLTVESLVPEIQVREMESMLQILSGNTAVLGGLMQDDVLTNTDKVPGLSKV 550

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P +G +F        +TE+ I   P ++
Sbjct: 551 PGVGKVFTGQNDANRKTELVIFLRPTVI 578


>gi|299065464|emb|CBJ36633.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CMR15]
          Length = 714

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+  +SS GATSV+     + L  T
Sbjct: 551 LSALEADGRGKIISSPRVVTADNIKALIEQGTEVPYQQATSS-GATSVSFKKANLKLEVT 609

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++  +G    +  +   +   T V + +GGT+V+ G+   + +
Sbjct: 610 PKITPDGNVFLDV--DVNKDSLGTQTTNGFAINTKHVQTQVLVENGGTVVIGGIYTQNER 667

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
                IPLL  IP+LG LF+++    + TE+ +  TP
Sbjct: 668 TDVNKIPLLGDIPVLGNLFKSTAKTNDRTELLVFLTP 704


>gi|293416358|ref|ZP_06658997.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B185]
 gi|291431714|gb|EFF04697.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B185]
          Length = 566

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 25/259 (9%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++ LL++A +  V L + I ++ ++ L+Q+G      G S+  S           VS   
Sbjct: 296 LVRLLDVA-KRHVELSLWIIDLNKNDLEQLGVAW---GGSTSFSNKLDIALNQTLVS--- 348

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                  LD   F   ++ALE+    R +++P L       A F +      K +     
Sbjct: 349 ------TLDGVHFLASVYALEKKNQARIVSKPVLMTQENVPAIFDNNRTFYTKLIGERNS 402

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ----TEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +  T  YG ++   P   + G I + +      E  + V G     +P        T 
Sbjct: 403 SLAHVT--YGTMISVLPRFSADGEIEMSLNIEDGNEEKQSVSGNEDSVLPEVGRTHISTV 460

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P G ++++ G  +D   +  + IPLL  IP++G LFR    N+           FL+
Sbjct: 461 ARVPQGKSLLIGGYTRDSRTKDVQKIPLLGDIPLIGGLFRYENQNQNNV-----VRVFLI 515

Query: 420 KPVAMRDLSRPD-DHYSVE 437
           +P  + D   PD D ++ E
Sbjct: 516 QPKEILDPLMPDADVFAAE 534


>gi|94500719|ref|ZP_01307248.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
 gi|94427041|gb|EAT12022.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
          Length = 640

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 105/251 (41%), Gaps = 30/251 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF----------------GGKF 238
           QV ++  I EV   +  ++G Q +     +G +   A DF                G   
Sbjct: 353 QVLIEAAIVEVTGQVDDRVGVQTAALDQETGETPLVATDFANAGTSISQLITGIATGQPA 412

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA--------ISGQSASFTSG 290
           +S G      G      F  ++ ALE  +    L+ P++          I GQ+  F +G
Sbjct: 413 ISSGLTLGGVGQNGDTEFAFLVQALESVSNANLLSTPSIMTMDNHEAEIIVGQNVPFVTG 472

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDM 348
                 + S+S   T++   D G  L  TP V     + L ++  TE   P       D+
Sbjct: 473 ---STSSTSNSNPFTTIKREDIGTTLKVTPHVQDGKFVRLSVEQSTESVAPTAVEGQADL 529

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            + + R   T +   +G  ++L GL++D +Q+ +  +P L  IPI+G LFR++  +R + 
Sbjct: 530 ITNK-RSIQTQILAENGEIVMLGGLIRDAVQESESKVPFLGDIPIIGWLFRSTSESRVKQ 588

Query: 409 EIFIAATPFLV 419
            + +   P +V
Sbjct: 589 NLIVFLKPTVV 599


>gi|17426227|ref|NP_510894.1| phage assembly protein [Enterobacteria phage M13]
 gi|138050|sp|P03665|G4P_BPM13 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|14969|emb|CAA23865.1| phage assembly protein [Enterobacteria phage M13]
          Length = 426

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S GG F   G+ +       + AL+  +  + L+ P +  +SGQ  S  S GQ++     
Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSI-SVGQNVPFITG 296

Query: 300 SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
             TG +        ++   + G+ +   P  ++ G I L I ++         A D+ + 
Sbjct: 297 RVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN 356

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   TTV L  G T++L GL          G+P LSKIP++G LF +   + EE+ ++
Sbjct: 357 Q-RSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLY 415

Query: 412 IAATPFLVKPVAMRDL 427
           +     LVK   +R L
Sbjct: 416 V-----LVKATIVRAL 426


>gi|171060554|ref|YP_001792903.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
 gi|170777999|gb|ACB36138.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
          Length = 760

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 34/252 (13%)

Query: 190 IAGED----QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           IA +D    +V L++ I EV R  ++ +G  +      +GP  S A  F      E G+ 
Sbjct: 320 IAAQDKADPEVVLELEILEVSRTKVRDLGITYP--SEFAGPGSSGAKLF------EIGEL 371

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVS 299
           + + +     ++  L  L      +TLA P +   + + A    G +       +  T +
Sbjct: 372 NRRTIGVDTGYK--LKLLRTDGDTKTLANPRVRVRNREKARVHVGDRVPVISSTIVGTTN 429

Query: 300 SSTGATSVTTH-----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPS 350
             +  T VTT      D G+ +   PT+ +   + + I  +VS   +G     NAG   +
Sbjct: 430 LGSNNTPVTTEQIQYLDVGIKIEAEPTIYADDSVAISINLDVSS--LGNQTRTNAGTT-A 486

Query: 351 YRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           Y V  R A T + L  G T  L GL++DD  Q   G+P L + P+L  +F + R +R   
Sbjct: 487 YEVGTRNASTVLRLRDGETQALMGLIRDDDVQTGAGLPYLGEFPVLDRIFGSKRTDRRSR 546

Query: 409 EIFIAATPFLVK 420
           E+ +  TP LV+
Sbjct: 547 ELVLLITPQLVR 558


>gi|166211|gb|AAA32218.1| protein IV [Enterobacteria phage f1]
 gi|58091841|gb|AAW65343.1| gene IV protein [synthetic construct]
 gi|58091857|gb|AAW65354.1| gene IV protein [synthetic construct]
 gi|153902269|dbj|BAF74211.1| protein IV [Enterobacteria phage f1]
 gi|262064184|gb|ACY07165.1| IV [Enterobacteria phage f1]
          Length = 426

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S GG F   G+ +       + AL+  +  + L+ P +  +SGQ  S  S GQ++     
Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSI-SVGQNVPFITG 296

Query: 300 SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
             TG +        ++   + G+ +   P  ++ G I L I ++         A D+ + 
Sbjct: 297 RVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN 356

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   TTV L  G T++L GL          G+P LSKIP++G LF +   + EE+ ++
Sbjct: 357 Q-RSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLY 415

Query: 412 IAATPFLVKPVAMRDL 427
           +     LVK   +R L
Sbjct: 416 V-----LVKATIVRAL 426


>gi|47420041|gb|AAT27370.1| pIV [VCSM13 interference-resistant helper phage]
          Length = 426

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S GG F   G+ +       + AL+  +  + L+ P +  +SGQ  S  S GQ++     
Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSI-SVGQNVPFITG 296

Query: 300 SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
             TG +        ++   + G+ +   P  ++ G I L I ++         A D+ + 
Sbjct: 297 RVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN 356

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   TTV L  G T++L GL          G+P LSKIP++G LF +   + EE+ ++
Sbjct: 357 Q-RSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLY 415

Query: 412 IAATPFLVKPVAMRDL 427
           +     LVK   +R L
Sbjct: 416 V-----LVKATIVRAL 426


>gi|167564371|ref|ZP_02357287.1| type II/III secretion system protein [Burkholderia oklahomensis
           EO147]
          Length = 521

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+      G + V      + L   
Sbjct: 362 LSALESEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 420

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   GR+ L +  ++++  +G      P+   +   T VE+ +GGT+ + G+ + D +
Sbjct: 421 PQITPDGRVILDL--DIAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 478

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 479 DDVTRVPLLGKIPVLGALFRHRALRAQRSELVVYITPTVV 518


>gi|89256170|ref|YP_513532.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314642|ref|YP_763365.1| type IV pilus assembly protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502212|ref|YP_001428277.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010550|ref|ZP_02275481.1| type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. holarctica FSC200]
 gi|290954188|ref|ZP_06558809.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312388|ref|ZP_06803168.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144001|emb|CAJ79239.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129541|gb|ABI82728.1| type IV pilus assembly protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156252815|gb|ABU61321.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 590

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 118/263 (44%), Gaps = 33/263 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224
           K+V+N ++I   DQV ++  I EV R    ++GF + +   SS                 
Sbjct: 332 KEVVNDIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSSRVNIGLYTFNSNPNPAP 390

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           GP+ +    F G        +++ G + R   E  + ALE  +    +A P L   + Q 
Sbjct: 391 GPTPTPVDTFVGTTAKLA--YTIAGGV-RLEME--VRALESESLAEEVASPHLVVANNQV 445

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A F   G+ +    ++++GA +V   +  + L  TP +   G I + I   V++  +G +
Sbjct: 446 A-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGAS 502

Query: 345 AGDMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            G  P         + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG L
Sbjct: 503 PGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYL 562

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F  ++   +++E+ I  TP +++
Sbjct: 563 FSYTKITDQDSELLIFITPKIIE 585


>gi|170695725|ref|ZP_02886867.1| type IV pilus secretin PilQ [Burkholderia graminis C4D1M]
 gi|170139330|gb|EDT07516.1| type IV pilus secretin PilQ [Burkholderia graminis C4D1M]
          Length = 581

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 19/240 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFGGKFVSEGGDFS 246
           QV ++  I E      + +G + S+ G+S        SG      AD   + ++ G D +
Sbjct: 345 QVLIEARIVEGEHGFSRNLGVRLSMAGTSADGTTRGLSGGKDGLVADLSARPIA-GFDAA 403

Query: 247 VKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             G L  F+          L ALE       ++ P +       A    G +  Y+    
Sbjct: 404 TAG-LTLFAAGATRLLNIELSALEAEGRGEVVSSPRVVTADRMKAVVEQGTELPYQ-AKV 461

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G + V      + L   P ++  GR+ L +  +V++  +G      P+   +   T V
Sbjct: 462 GQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRV 519

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           E+  GGT+ + G+   D +     +PLL KIP+LGALFR+     + +E+ +  TP +V+
Sbjct: 520 EVEDGGTVSIGGIYATDGRDDVTRVPLLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 579


>gi|297570248|ref|YP_003691592.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926163|gb|ADH86973.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 532

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 24/245 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV---- 250
           Q++++  I EV  D   + G      G  SG   +F   FG + +    D +  GV    
Sbjct: 292 QISIEAKIVEVNLDEQHKSGIDWR--GVLSGKHLNFEL-FGPEGIIYPWDAAGGGVTQAT 348

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTG--A 304
           +    F+ +L A+E   A   LA P ++ ++GQ A  T G    Y    +T + + G  +
Sbjct: 349 IGPNPFQVLLDAIETQGAADVLANPKISVMNGQPALITVGETFRYISQVETTTDTGGGIS 408

Query: 305 TSVTTHDY--GVVLHFTPTVLSPGRIGLR---IQTEVSEPVI-----GVNAGDMPSYRVR 354
           TSVTT     G+ L   PT+     I L    + + +++P+      G+    +P   +R
Sbjct: 409 TSVTTDTVMSGLGLAVLPTITDQNEIVLSLTPVTSSLTQPMQERTFQGMTV-QLPQINIR 467

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + ++ V++  G T+++ GL+ +        +P+L  IPILG LF +      + E+ I  
Sbjct: 468 ELNSVVKVRDGDTLMIGGLIDNVQDSTSHRVPILGNIPILGKLFSHETKTSRKRELVILL 527

Query: 415 TPFLV 419
            P ++
Sbjct: 528 QPTII 532


>gi|219872291|ref|YP_002476666.1| competence protein E/type II secretory pathway, component HofQ
           [Haemophilus parasuis SH0165]
 gi|219692495|gb|ACL33718.1| competence protein E/type II secretory pathway, component HofQ
           [Haemophilus parasuis SH0165]
          Length = 420

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 1/161 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE    I  +A P L     + AS   G +  Y   S     T +   +  + L  T
Sbjct: 251 LTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKKKEITDIEFREAVLGLEVT 310

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +    +I L +    + P   +N   M +   ++ +T V    G TIVL G+ +  I 
Sbjct: 311 PHISKQNQILLDLAISQNSPNNQMN-NMMATIDKQEINTQVLAKHGETIVLGGIFQHLIA 369

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + ++ +PLL  IP++  LF  +R    + E+ I  TP++VK
Sbjct: 370 KGEDKVPLLGSIPVIKRLFSQNRDKISKRELVIFVTPYIVK 410


>gi|153902280|dbj|BAF74221.1| protein IV [Enterobacteria phage f1]
          Length = 426

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S GG F   G+ +       + AL+  +  + L+ P +  +SGQ  S  S GQ++     
Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSI-SVGQNVPFITG 296

Query: 300 SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
             TG +        ++   + G+ +   P  ++ G I L I ++         A D+ + 
Sbjct: 297 RVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN 356

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   TTV L  G T++L GL          G+P LSKIP++G LF +   + EE+ ++
Sbjct: 357 Q-RSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLY 415

Query: 412 IAATPFLVKPVAMRDL 427
           +     LVK   +R L
Sbjct: 416 V-----LVKATIVRAL 426


>gi|291286288|ref|YP_003503104.1| type II and III secretion system protein [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883448|gb|ADD67148.1| type II and III secretion system protein [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 509

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 99/241 (41%), Gaps = 23/241 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++  + EV  +     G     T        S   D GG  V  GG  +  G +  F
Sbjct: 268 QVLIEAKLVEVTLNDTSAYGINWRGTADGKSIGLSLGTD-GGAAVLPGG-LTAVGAISSF 325

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-- 312
            +      +     + ++  P +  ++GQSA  TSG    +  +   T   +        
Sbjct: 326 DYSDWFAFMAAYGRVESVGNPRIRVMNGQSAMITSGQLKPFWEMERETDDDTDDVTVTYT 385

Query: 313 ------GVVLHFTPTVLSPGRIGLRIQ------TEVSEPVI---GVNAGDMPSYRVRKAD 357
                 G++L  TP V   G I L I        E  E  +   GV     P+  +++A 
Sbjct: 386 RVTVLDGIMLGVTPHVKEDGTITLNIVPVFSDVEETPEQQLDENGVVVASYPNINLKEAG 445

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF---NREETEIFIAA 414
           T + L SG T+V+ GL+ +   + +  +PLL  +P LG LF+ S++    + E  IF+ A
Sbjct: 446 TVLNLESGSTVVMGGLISNVETEDETKVPLLGDVPFLGYLFK-SKYKYTQKRELVIFLTA 504

Query: 415 T 415
           T
Sbjct: 505 T 505


>gi|251793894|ref|YP_003008626.1| protein transport protein HofQ [Aggregatibacter aphrophilus NJ8700]
 gi|247535293|gb|ACS98539.1| protein transport protein HofQ [Aggregatibacter aphrophilus NJ8700]
          Length = 474

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 2/163 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALER   +  +A P L   + ++AS   G +  Y  V+  +G+ SV   +  + L  T
Sbjct: 279 LTALERENNVEIIASPRLLTTNKKAASIKQGTELPYILVNEKSGSQSVEFREAVLGLEVT 338

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    +I L +    + P   +    G++ S   ++ +T V    G TIVL G+  D 
Sbjct: 339 PHISQDKQILLDLVVSQNAPGSRVAHGLGEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 398

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I +  + +PLL  IP +  LF       ++ E+ I  TP +++
Sbjct: 399 ITKNVDKVPLLGDIPGVKHLFSKESERHQKRELVIFVTPHILR 441


>gi|254459101|ref|ZP_05072524.1| type II and III secretion system protein [Campylobacterales
           bacterium GD 1]
 gi|207084372|gb|EDZ61661.1| type II and III secretion system protein [Campylobacterales
           bacterium GD 1]
          Length = 551

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 25/205 (12%)

Query: 235 GGKFVSEGGDFSVK--GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           G + V+E    +VK  G LD      V+  L+    + +++ P +  ++ Q A  T+G +
Sbjct: 294 GAQAVNEASLVTVKAGGTLDE-----VIKFLQTQGDVVSISNPKVLTLNNQPALITAGTE 348

Query: 293 HLYKTVSSST-----GATSVTTHD-------YGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           + YK  S +      G  + TT +        GV+L  TP +     I L+I   +SE  
Sbjct: 349 YFYKIKSETNQQGTGGGVAATTQNDTVQSVFAGVLLDITPEIADDKSITLKINPSLSETA 408

Query: 341 IGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
             ++          P    R+  + V +  G  I+L GL+          +PLL  IP L
Sbjct: 409 QDISQESSANRVMPPDLNRRQLSSVVTVKDGNRIILGGLINTKNVNKSNKVPLLGDIPGL 468

Query: 395 GALFRNSRFNREETEIFIAATPFLV 419
             LF+     ++  E+ I   P ++
Sbjct: 469 SYLFKYEEMTKQIQELVIVIEPHII 493


>gi|170766764|ref|ZP_02901217.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia albertii TW07627]
 gi|170124202|gb|EDS93133.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia albertii TW07627]
 gi|315617521|gb|EFU98127.1| conserved hypothetical protein [Escherichia coli 3431]
          Length = 512

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 104/226 (46%), Gaps = 37/226 (16%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           Q+ + V+I +V  + L+Q+G   S T     G+ +  S +  A+     +S   +F ++ 
Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSAAQANISSSVISNANNFMIR- 333

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307
                     ++AL++ +  + L++P++  ++   A         Y  VS    A+  S+
Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382

Query: 308 TTHDYGVVLHFTPTVL--SPG----------RIGLRIQ---TEVSEPVIGVNAGDMPSYR 352
           T+   G +L  TP +L  +P           R+ L IQ      S+  I      +P  +
Sbjct: 383 TS---GTLLRVTPRILDDTPNSLTGKRRERVRLLLDIQDGNQSTSQSNIQDTGSLLPEVQ 439

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             +  T   L +G +++L G ++D     K+GIPLLS IP++G+LF
Sbjct: 440 NSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485


>gi|320327874|gb|EFW83879.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 775

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G         +    S++T  +SV 
Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 630

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS      N  D    P    R   T V   SG
Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAKSG 690

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++
Sbjct: 691 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI 744


>gi|94312199|ref|YP_585409.1| type II and III secretion system protein [Cupriavidus metallidurans
           CH34]
 gi|93356051|gb|ABF10140.1| pili assembly protein PilQ [Cupriavidus metallidurans CH34]
          Length = 710

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +   +   A    G +  Y++ +SS GATSV      + L  T
Sbjct: 547 LSALEADGKGKIISSPRVVTANNIKALIEQGTELPYQSATSS-GATSVQFRKANLKLEVT 605

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++  +G+   +  +   +   T V + +GGT+V+ G+   +  
Sbjct: 606 PQITPEGNVLLDV--DVNKDSVGIRTDNGFAIDTKHVQTQVLVENGGTVVIGGIYSQEES 663

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
                +P L  +P+LG  F+N+      TE+ +  TP
Sbjct: 664 NTVNKVPWLGDLPVLGNFFKNNAKVNNRTELLVFLTP 700


>gi|167948310|ref|ZP_02535384.1| General secretion pathway protein D [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 251

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 18/205 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--EGGDFSVKGVLD 252
           QV ++ TIAEV        G +  + G+  G  K +         S   G  FS+ G+L+
Sbjct: 51  QVLIEATIAEVSLTNNLSYGVRWFLQGNMGGSDK-WQGGLNLPLPSGVSGSGFSL-GILN 108

Query: 253 RF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------- 304
                +   + L   ++++ L+ P +  +  QSASF  G Q    T SS +         
Sbjct: 109 SMDELKLFFNLLNAQSSVKFLSAPQIMVVDNQSASFRVGDQIPIITRSSQSTTNPDAPIV 168

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTV 360
           T V   D G +L  TP V   G + L I  EVS+P     +G   G++P  + R  D+TV
Sbjct: 169 TEVQFRDTGTLLTVTPRVNVGGMVTLEISQEVSKPGSAPAVG-GGGNVPIAQ-RTVDSTV 226

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGI 385
            + SG TI+L GL+ +     K+GI
Sbjct: 227 VVNSGQTIILGGLISETSNDTKDGI 251


>gi|261339183|ref|ZP_05967041.1| hypothetical protein ENTCAN_05409 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319030|gb|EFC57968.1| general secretion pathway protein D [Enterobacter cancerogenus ATCC
           35316]
          Length = 643

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 123/284 (43%), Gaps = 44/284 (15%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--G 236
           +S +KV++ L+I    QV ++  IAEV+      +G Q   TG   G        FG  G
Sbjct: 328 NSLEKVIDKLDIR-RPQVLVEAIIAEVQDGNGMDLGVQW--TGKHGG------VQFGATG 378

Query: 237 KFVSEGGDFSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             +S+  + ++KG              F  ++ AL   +    L+ P++  +  + ASF 
Sbjct: 379 LPISQVKNGTMKGTAFTGLATGFFNGDFGALVTALSTGSKNDILSTPSVVTLDNKEASFN 438

Query: 289 SGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342
            G      + S +T       SV     G  L   P +     I L+I+ EVS  +    
Sbjct: 439 VGQDVPVLSGSQTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDASAT 498

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +A   P++  R  +  V + SG T+VL GL+++  ++    +PLL  IP++G LF   R
Sbjct: 499 EDASLGPTFNTRTINNEVMVHSGQTVVLGGLMENVTKETVSKVPLLGDIPLVGQLF---R 555

Query: 403 FNREETE-----IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           +  E+T      +FI  T        +RD    DD+YS     K
Sbjct: 556 YTSEDTSKRNLMVFIHTT-------VLRD----DDNYSAASKEK 588


>gi|320323732|gb|EFW79816.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 775

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G         +    S++T  +SV 
Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 630

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS      N  D    P    R   T V   SG
Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAQSG 690

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++
Sbjct: 691 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI 744


>gi|325983467|ref|YP_004295869.1| type II and III secretion system protein [Nitrosomonas sp. AL212]
 gi|325532986|gb|ADZ27707.1| type II and III secretion system protein [Nitrosomonas sp. AL212]
          Length = 756

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 24/258 (9%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           LN   E +V L V I E+ R     +G  F  S+  + +G +       GG   +    F
Sbjct: 330 LNDLAEPEVVLDVAILEISRANTFLLGPNFPQSLQFNYAGNA------VGGAPAALISQF 383

Query: 246 SVKGVLDRFSF--ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           ++ G L  F    E  +  +   +    LA P +   + + A    G +  + T +   G
Sbjct: 384 NMPG-LKSFGMTSEAKIDFMHNLSIGDVLANPRIRVANREKAKIHVGEKRPFFTANVQPG 442

Query: 304 ATSVTTH-----DYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRK 355
             S+ T      D GV L   P + S   + ++I  EVS   + V G      P    R 
Sbjct: 443 INSIVTSTPTFIDLGVKLDVEPRIGSNNDVTMKITLEVSSSTQNVSGPGGATAPLVVTRN 502

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A+T + +  G T VLAGL++D      +G+  L  IP L  LF N    R + E+ +  T
Sbjct: 503 AETLLTVKDGETQVLAGLIQDSDTTNVKGLAGLLNIPGLDRLFSNQDVRRSKNEVVLLIT 562

Query: 416 PFLVKPVAMRDLSRPDDH 433
           P +V     R+L  P + 
Sbjct: 563 PRIV-----RNLPNPTNQ 575


>gi|71733584|ref|YP_275230.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554137|gb|AAZ33348.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 759

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G         +    S++T  +SV 
Sbjct: 555 NLQVALRALETNGRTQILSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 614

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS      N  D    P    R   T V   SG
Sbjct: 615 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAQSG 674

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++
Sbjct: 675 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI 728


>gi|77458214|ref|YP_347719.1| type II and III secretion system protein [Pseudomonas fluorescens
           Pf0-1]
 gi|77382217|gb|ABA73730.1| putative general secretion pathway protein D [Pseudomonas
           fluorescens Pf0-1]
          Length = 615

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 11/162 (6%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321
           I TLA P +  +S +  +    GQ +    ++S  +T       SVT  D G+ L   PT
Sbjct: 397 INTLASPVIR-VSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPT 455

Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           V     + ++I  EVS   P+     G +P     R A T++ L  G T +LAGL+++D 
Sbjct: 456 VHLNNEVAIKIALEVSNATPLEPTRQGTIPVQVDTRNAQTSLRLHDGETQILAGLMRNDH 515

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                 IP L  IP LG LF +++    ++E+ ++ TP +V+
Sbjct: 516 GATGNKIPGLGDIPGLGRLFGSNKDTIGKSELVLSITPRIVR 557


>gi|260869693|ref|YP_003236095.1| T3SS structure protein EscC [Escherichia coli O111:H- str. 11128]
 gi|221361432|emb|CAX18585.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|257766049|dbj|BAI37544.1| T3SS structure protein EscC [Escherichia coli O111:H- str. 11128]
 gi|323178902|gb|EFZ64478.1| hypothetical protein ECOK1180_2636 [Escherichia coli 1180]
          Length = 512

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 39/227 (17%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           Q+ + V+I +V  + L+Q+G   S T     G+ +  S +  A+     +S   +F ++ 
Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQANISSSVISNASNFMIR- 333

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307
                     ++AL++ +  + L++P++  ++   A         Y  VS    A+  S+
Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382

Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGD----MPSY 351
           T+   G +L  TP +L               R+ L IQ + ++     NA D    +P  
Sbjct: 383 TS---GTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSTLPEV 438

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           +  +  T   L +G +++L G ++D     K+GIPLLS IP++G+LF
Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485


>gi|215488986|ref|YP_002331417.1| T3SS structure protein EscC [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967940|ref|ZP_07782152.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|54311608|emb|CAG17523.1| EscC protein [Escherichia coli]
 gi|215267058|emb|CAS11503.1| T3SS structure protein EscC [Escherichia coli O127:H6 str.
           E2348/69]
 gi|221361489|emb|CAX18660.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361550|emb|CAX18740.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|312287501|gb|EFR15409.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|320193805|gb|EFW68438.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli WV_060327]
 gi|320201526|gb|EFW76105.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli EC4100B]
          Length = 512

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 107/227 (47%), Gaps = 39/227 (17%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           Q+ + V+I +V  + L+Q+G   S T     G+ +  S +  A+     +S   +F ++ 
Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQANISSSVISNASNFMIR- 333

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307
                     ++AL++ +  + L++P++  ++   A         Y  VS    A+  S+
Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382

Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGDMPSY--RV 353
           T+   G +L  TP +L               R+ L IQ + ++     NA D  S    V
Sbjct: 383 TS---GTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSTLPEV 438

Query: 354 RKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + ++ T E  L +G +++L G ++D     K+GIPLLS IP++G+LF
Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485


>gi|330447077|ref|ZP_08310727.1| type IV pilus secretin PilQ family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491268|dbj|GAA05224.1| type IV pilus secretin PilQ family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 569

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 7/164 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+       ++ P L   + ++A    G +  Y   SSS GATSV+     + L  T
Sbjct: 407 LSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVT 465

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA----GDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           P +    ++ L +  EV++   G +     G   S   ++  T V + +G T+VL G+ +
Sbjct: 466 PQITPDDKLVLDL--EVTQDNKGEDVPTGEGTAVSIDTQRIGTQVLVNNGETVVLGGIYQ 523

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  +   +P+L  IP+LGALFR+      + E+ I  TP +V
Sbjct: 524 HSMTNVTRKVPVLGDIPVLGALFRHKMEQMGKRELLIFVTPKIV 567


>gi|307825428|ref|ZP_07655647.1| general secretion pathway protein D [Methylobacter tundripaludum
           SV96]
 gi|307733603|gb|EFO04461.1| general secretion pathway protein D [Methylobacter tundripaludum
           SV96]
          Length = 712

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 22/182 (12%)

Query: 259 VLHALERATA----IRTLAEPTLTAISGQSASFTSGGQHLYKT-------------VSSS 301
           +++AL  A A    +  ++ P+L  ++ Q A    G Q   +T              +++
Sbjct: 500 IVNALLSAQANKGNVNIISSPSLMVLNNQEAKINVGDQVPIQTGTLGSVVGSGGTTGATT 559

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADT 358
              +S+   D GV L  TP V + G + + I+  VS  V    GVN    P+ + ++ ++
Sbjct: 560 AIQSSIQYKDTGVTLEVTPRVNANGMVIMDIKQTVSSAVKTETGVNTS--PTIQKKEIES 617

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +V +    TIVL GL+ ++      GIP L+++P +G LF N+     + E+ +  TP +
Sbjct: 618 SVAVQDSETIVLGGLIDNNNSNAIGGIPWLNELPWIGPLFGNTDRENIKNELVVLITPRV 677

Query: 419 VK 420
           VK
Sbjct: 678 VK 679


>gi|254497667|ref|ZP_05110447.1| type IV pilus (Tfp) assembly protein PilQ [Legionella drancourtii
           LLAP12]
 gi|254353104|gb|EET11859.1| type IV pilus (Tfp) assembly protein PilQ [Legionella drancourtii
           LLAP12]
          Length = 652

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 2/152 (1%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D    +  L ALE       ++ P L   + Q A   SG +  Y+  S+S+GAT+V    
Sbjct: 499 DNILLDLELSALESEGRAELISSPRLITTNQQPAVIDSGQEIPYQE-STSSGATAVAFKK 557

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
             + L  TP +    +I + ++         +  G +P+   ++  T V + +G TIVL 
Sbjct: 558 AVLSLRVTPQITPDSKILMDLKINQDTASTQLFNG-VPAILTKEIQTNVLVSNGQTIVLG 616

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           G+ + D  +    IP L ++P++G LFRN++ 
Sbjct: 617 GIYQQDKSRTITRIPFLGQLPVVGNLFRNTQI 648


>gi|224373395|ref|YP_002607767.1| type II and III secretion system protein [Nautilia profundicola
           AmH]
 gi|223589657|gb|ACM93393.1| type II and III secretion system protein [Nautilia profundicola
           AmH]
          Length = 449

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 13/179 (7%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-STGATSVTTHDY 312
           F+   +L+ L +   + +++ P +  ++ Q A    G    YK  S  +T      T +Y
Sbjct: 246 FNVGGLLNFLAQNGNVNSISNPKIVTLNNQKALIKVGDTIYYKYASEITTDNNGNPTTEY 305

Query: 313 -------GVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTTV 360
                  GV+L  TP +   G I L I   +S       +  VN    P  +     + V
Sbjct: 306 TIDSKFVGVLLDITPQISDNGEIILSINPRISAFKDATQLSNVNRDMPPDTQDNTMISVV 365

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +L    T+VL GL+ DD Q    G+P+L +IPI+  LF +      + E+    TP ++
Sbjct: 366 KLKDNDTLVLGGLITDDKQLKVNGVPVLKEIPIIKYLFSSREEITTKKELVFVITPHII 424


>gi|254369170|ref|ZP_04985182.1| type IV pilus assembly protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122120|gb|EDO66260.1| type IV pilus assembly protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 590

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 118/263 (44%), Gaps = 33/263 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------------GSSS 224
           K+V+N ++I   DQV ++  I EV R    ++GF + +                   S+ 
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYDVVDPSGRVNIGLYTFNSNPNSAP 390

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           GP+ +    F G        +++ G + R   E  + ALE  +    +A P L   + Q 
Sbjct: 391 GPTPTPVDTFVGTTAKLA--YTIAGGV-RLEME--VRALESESLAEEVASPHLVVANNQV 445

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A F   G+ +    ++++GA +V   +  + L  TP +   G I + I   V++  +G +
Sbjct: 446 A-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGAS 502

Query: 345 AGDMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            G  P         + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG L
Sbjct: 503 PGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYL 562

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F  ++   +++E+ I  TP +++
Sbjct: 563 FSYTKITDQDSELLIFITPKIIE 585


>gi|124268293|ref|YP_001022297.1| fimbrial biogenesis protein [Methylibium petroleiphilum PM1]
 gi|124261068|gb|ABM96062.1| fimbrial biogenesis protein [Methylibium petroleiphilum PM1]
          Length = 721

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 4/169 (2%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++RF     + ALE     + ++ P +       A    G +  Y+T +SS GAT++   
Sbjct: 549 MNRF-LNLEISALEADGKGKIVSSPRVVTADQVKALIEQGTEIPYQTATSS-GATAIQFR 606

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
              + L   P +   G I L +      P     AG +     +   T V + +GGT+V+
Sbjct: 607 KATLKLEVIPQITPEGNIILDVDVNKDSPGATTAAGIL--INTKHVKTQVLVDNGGTVVI 664

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G+ +   Q     +PLL  +P+LGALFR+      +TE+ +  TP +V
Sbjct: 665 GGIYEQTEQIDNTKVPLLGDVPVLGALFRSQTRTSNKTELLVFLTPKVV 713


>gi|15804236|ref|NP_290275.1| hypothetical protein Z5126 [Escherichia coli O157:H7 EDL933]
 gi|15833829|ref|NP_312602.1| EscC [Escherichia coli O157:H7 str. Sakai]
 gi|168748648|ref|ZP_02773670.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4113]
 gi|168753525|ref|ZP_02778532.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4401]
 gi|168759822|ref|ZP_02784829.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4501]
 gi|168766122|ref|ZP_02791129.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4486]
 gi|168772329|ref|ZP_02797336.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4196]
 gi|168779857|ref|ZP_02804864.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4076]
 gi|168785590|ref|ZP_02810597.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC869]
 gi|168798671|ref|ZP_02823678.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC508]
 gi|195936258|ref|ZP_03081640.1| EscC [Escherichia coli O157:H7 str. EC4024]
 gi|208808738|ref|ZP_03251075.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208812386|ref|ZP_03253715.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208819063|ref|ZP_03259383.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209395836|ref|YP_002273173.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4115]
 gi|217325945|ref|ZP_03442029.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. TW14588]
 gi|254795650|ref|YP_003080487.1| type III needle complex subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225794|ref|ZP_05940075.1| type III needle complex subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258839|ref|ZP_05951372.1| type III needle complex subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285063|ref|YP_003501881.1| escC [Escherichia coli O55:H7 str. CB9615]
 gi|12518466|gb|AAG58839.1|AE005596_9 escC [Escherichia coli O157:H7 str. EDL933]
 gi|3414909|gb|AAC31520.1| L0041 [Escherichia coli]
 gi|13364050|dbj|BAB37998.1| type III secretion system EscC protein [Escherichia coli O157:H7
           str. Sakai]
 gi|187771452|gb|EDU35296.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4196]
 gi|188016923|gb|EDU55045.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4113]
 gi|189002416|gb|EDU71402.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4076]
 gi|189358814|gb|EDU77233.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4401]
 gi|189364509|gb|EDU82928.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4486]
 gi|189369868|gb|EDU88284.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4501]
 gi|189374516|gb|EDU92932.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC869]
 gi|189378854|gb|EDU97270.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC508]
 gi|195957526|gb|ACG59637.1| type III secretion system protein EscC [Escherichia coli O157:H7]
 gi|195957585|gb|ACG59695.1| type III secretion system protein EscC [Escherichia coli]
 gi|195957642|gb|ACG59751.1| EscC [Escherichia coli]
 gi|208728539|gb|EDZ78140.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208733663|gb|EDZ82350.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208739186|gb|EDZ86868.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209157236|gb|ACI34669.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4115]
 gi|217322166|gb|EEC30590.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. TW14588]
 gi|254595050|gb|ACT74411.1| type III needle complex subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|255348323|gb|ACU09465.1| type III secretion outer membrane pore YscC/HrcC family
           [Escherichia coli]
 gi|290764936|gb|ADD58897.1| escC [Escherichia coli O55:H7 str. CB9615]
 gi|320191251|gb|EFW65901.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC1212]
 gi|320639365|gb|EFX08980.1| outer membrane secretin SsaC [Escherichia coli O157:H7 str. G5101]
 gi|320644809|gb|EFX13845.1| outer membrane secretin SsaC [Escherichia coli O157:H- str. 493-89]
 gi|320650073|gb|EFX18569.1| outer membrane secretin SsaC [Escherichia coli O157:H- str. H 2687]
 gi|320655420|gb|EFX23355.1| outer membrane secretin SsaC [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661047|gb|EFX28483.1| outer membrane secretin SsaC [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666172|gb|EFX33178.1| outer membrane secretin SsaC [Escherichia coli O157:H7 str. LSU-61]
 gi|326337301|gb|EGD61136.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. 1044]
 gi|326341675|gb|EGD65464.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. 1125]
          Length = 512

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 107/227 (47%), Gaps = 39/227 (17%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           Q+ + V+I +V  + L+Q+G   S T     G+ +  S +  A+     +S   +F ++ 
Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQANISSSVISNASNFMIR- 333

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307
                     ++AL++ +  + L++P++  ++   A         Y  VS    A+  S+
Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382

Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGDMPSY--RV 353
           T+   G +L  TP +L               R+ L IQ + ++     NA D  S    V
Sbjct: 383 TS---GTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSTLPEV 438

Query: 354 RKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + ++ T E  L +G +++L G ++D     K+GIPLLS IP++G+LF
Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485


>gi|310765060|gb|ADP10010.1| General secretion pathway protein D [Erwinia sp. Ejp617]
          Length = 645

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 5/171 (2%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
           ++  + +AL+  +    LA P++  +    A FT G      T S +T       SV   
Sbjct: 414 NWAGLFNALQTNSQNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGVFNSVDRK 473

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIV 369
             G+ L   P +     + + I+ EVS      +   +  ++  R    TV + SG T+V
Sbjct: 474 SVGIKLKVKPQINKGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNTVLVESGKTVV 533

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + GLL     +++  +P+L KIP+LGALFR +   + +  + +   P +++
Sbjct: 534 VGGLLDTTHNKVESSVPVLGKIPLLGALFRYTTDKQSKRNLMLFIRPTIIR 584


>gi|118594956|ref|ZP_01552303.1| general secretion pathway protein D [Methylophilales bacterium
           HTCC2181]
 gi|118440734|gb|EAV47361.1| general secretion pathway protein D [Methylophilales bacterium
           HTCC2181]
          Length = 1061

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 14/180 (7%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSV--TTHD 311
           SF   L AL   T  + L++P+L  +  + AS   G    +  +V+++ GA++   T   
Sbjct: 597 SFAANLEALITKTKSQVLSKPSLMTLDNRQASIKVGTNIPIAASVTTAVGASTAGFTYLP 656

Query: 312 YGVVLHFTPTVLSPGR-IGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTV 360
            G++L+  P +    + I + I   +S+ V           GV     P+  +RK  T  
Sbjct: 657 VGIMLNIRPRISDDNQEISMLIDATISQKVDDEDVIIYNSTGVAMASAPTTTLRKIQTYA 716

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +   +++AGL+         G+P+LS IP+LG LF     +  +TE+ +  TP +++
Sbjct: 717 RVNNESPLIIAGLVSKQKTMTTTGVPVLSSIPLLGGLFSFESPSNVDTEVVLIITPTIIE 776


>gi|220936186|ref|YP_002515085.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997496|gb|ACL74098.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. HL-EbGR7]
          Length = 711

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 2/153 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           ++ P +   +GQ+A    G +  Y+  +SS GAT+V   +  +    TP +   G I L 
Sbjct: 559 ISSPRVITANGQTARIQQGERIPYQEATSS-GATAVQFIEAVLATEVTPQITPNGNIILN 617

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           I+     P   V  G  PS   R+ +T V + +G T+VL G+ + D  +  E +P    +
Sbjct: 618 IRVNKDNPGTLVVQG-TPSIETREVETQVFVRNGETVVLGGVYEIDSLETLEKVPFFGDL 676

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P +  LFR +  +  + E+ I  TP +++  A+
Sbjct: 677 PGIRHLFRRTGKSTRKAELLIFVTPKVIEETAL 709


>gi|134095138|ref|YP_001100213.1| mannose-sensitive hemagglutinin L [Herminiimonas arsenicoxydans]
 gi|133739041|emb|CAL62089.1| Putative general secretion pathway protein D [Herminiimonas
           arsenicoxydans]
          Length = 581

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 38/235 (16%)

Query: 220 TGSSS--GPSKSFAADFGGKFVSEGGDFSVKGV----------LDRFSFETVLHALERAT 267
           TG+SS    +++F+   GG+  +  G   + GV          L   +F  ++  LE   
Sbjct: 322 TGASSIDATARTFS---GGQLTALPGQDLLSGVSNLGSMFGLALQTKNFAALISFLETQG 378

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKT------VSSSTGATSVTTHDY------GVV 315
            +  L+ P +  ++ Q A    G    + T       SS TG  +VT +        GVV
Sbjct: 379 NVHVLSSPRIATLNNQKAVLKVGTDEFFVTNVSSNITSSGTGGNTVTPNVTLQPFFSGVV 438

Query: 316 LHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGD------MPSYRVRKADTTVELPS 364
           L  TP +   G I L I   VS     E VI +  G       +      + D+ V    
Sbjct: 439 LDVTPQIDEQGNIILHIHPSVSDVQTSEKVINLGTGGGVLTLPLAKSNTSETDSVVRAQD 498

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G  I L GL++      +  +P    +P+LG LFRN+  + ++ E+ I   P ++
Sbjct: 499 GNIIALGGLMRQGTSSDRSQLPGAGDVPVLGNLFRNTNQSTQKRELVILLKPTII 553


>gi|269961295|ref|ZP_06175661.1| MSHA biogenesis protein MshL [Vibrio harveyi 1DA3]
 gi|269833961|gb|EEZ88054.1| MSHA biogenesis protein MshL [Vibrio harveyi 1DA3]
          Length = 544

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 34/255 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------GKFVSEGGDF 245
           QV L+  I EV      Q G   S   +S G S S   D           G  +  GG  
Sbjct: 270 QVILEAKILEVTLSDGYQQGINWSNMSASIGNSGSVVVDRNPVSLPLDAIGSLL--GGQT 327

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG- 303
           +V       +FE V+  +     +  L+ P +TA + Q +    G    + T +SS+ G 
Sbjct: 328 NV--TFSDGNFEAVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGN 385

Query: 304 --------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------ 346
                      +T    G+ L  TP + + G + L +     EV E +  +N G      
Sbjct: 386 GENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKKLNLGGDFQDI 445

Query: 347 DMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            +P  +  +R++D+ +    G  +V+ GL+K    +    +P L  +P LG LFRN    
Sbjct: 446 QLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNV 505

Query: 405 REETEIFIAATPFLV 419
            ++TE+ I   P +V
Sbjct: 506 TQKTELVILLKPTVV 520


>gi|300690208|ref|YP_003751203.1| fimbrial type-4 assembly protein [Ralstonia solanacearum PSI07]
 gi|299077268|emb|CBJ49894.1| fimbrial type-4 assembly protein [Ralstonia solanacearum PSI07]
          Length = 717

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+  +SS GATSV      + L  T
Sbjct: 554 LSALEADGRGKIISSPRVVTADNIKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVT 612

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++  +G    +  +   +   T V + +GGT+V+ G+   + +
Sbjct: 613 PKITPDGNVFLDV--DVNKDSVGTQTTNGFAINTKHVQTQVLVENGGTVVIGGIYTQNER 670

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
                +PLL  IP+LG LF+++    + TE+ +  TP
Sbjct: 671 TDVNKVPLLGDIPVLGNLFKSTAKTNDRTELLVFLTP 707


>gi|92112745|ref|YP_572673.1| type II and III secretion system protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91795835|gb|ABE57974.1| type II and III secretion system protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 668

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 100/203 (49%), Gaps = 10/203 (4%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           +G++ G S   + D G    S G  FS   +      +  L ALE     +T+++P +  
Sbjct: 466 SGANRG-SAGLSVDLGDSDGS-GSTFSFGYLSGDVLLDLELRALESEGKSQTISQPKVIT 523

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            + ++A    G +  Y+  S+S+GAT+V   +  + L  TP +   G I + +   ++  
Sbjct: 524 ANQKTAVIKQGQEIPYQE-STSSGATNVEFKEAVLSLEATPQITPDGSIVMDLL--INND 580

Query: 340 VIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE--GIPLLSKIPILGA 396
            +  N+ D  P+      +T V +  G T+VL G+L    +QL+     P L  +P++G+
Sbjct: 581 TVADNSYDGAPAIDTNSIETQVLVDDGATVVLGGILTS--EQLRNLYKTPFLGDLPLIGS 638

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFR ++ + E+ E+ I  TP ++
Sbjct: 639 LFRYTQESNEKVELLIFITPTII 661


>gi|254281904|ref|ZP_04956872.1| fimbrial assembly protein PilQ, putative [gamma proteobacterium
           NOR51-B]
 gi|219678107|gb|EED34456.1| fimbrial assembly protein PilQ, putative [gamma proteobacterium
           NOR51-B]
          Length = 729

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 6/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE +     +++P +       A+  SG +  Y+   +++GAT+    +  + L  T
Sbjct: 562 LQALEASGQGEIVSQPKVITGDKLPATIKSGTEIPYQE-GAASGATTTQFKEAVLKLEVT 620

Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +   GRI L +   Q  V E V   N G +PS    +  T V + +G T+VL G+ + 
Sbjct: 621 PNITPDGRILLDLVINQDSVGEEVGTPNGGRIPSIDTTELTTQVLVGNGETVVLGGVFQS 680

Query: 377 DIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFI 412
           D +     +P+L  IP LG LF+++  +  ++ET IFI
Sbjct: 681 DERIDVSKVPVLGDIPYLGNLFKSTIKQSIKQETLIFI 718


>gi|150021613|ref|YP_001306967.1| type II and III secretion system protein [Thermosipho melanesiensis
            BI429]
 gi|149794134|gb|ABR31582.1| type II and III secretion system protein [Thermosipho melanesiensis
            BI429]
          Length = 1302

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 260  LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
            ++A ++ T I  LA P + A SG+ AS   G + +   ++++     +   + GV L  T
Sbjct: 1142 INATDKDTKI--LASPNVVAKSGEKASILIGDK-IPIVLTTAENTQEIKYIESGVTLEIT 1198

Query: 320  PTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            P V +   I L +  +VS     V  V    +P  R R+ ++ + L    T+++ GL ++
Sbjct: 1199 PFVNADNTIDLELNIKVSSFDWDVKNVYGLTLPLERTREFNSKISLKENETLIIGGLTRE 1258

Query: 377  DIQQLKEGIPLLSKIPILGALFRNSR 402
            +  + +  +P+L  +PI+G  F+  +
Sbjct: 1259 ENSKTESKVPILGDLPIIGKFFKTEK 1284


>gi|71066434|ref|YP_265161.1| fimbrial assembly protein PilQ [Psychrobacter arcticus 273-4]
 gi|71039419|gb|AAZ19727.1| fimbrial assembly protein PilQ [Psychrobacter arcticus 273-4]
          Length = 756

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 7/161 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + A  R   I T   P +     Q+A  +SG Q  Y+  S+S GAT+ +  +  + L  T
Sbjct: 596 MQADNRGEVIST---PKILTSDKQTAKISSGTQIPYQEASAS-GATTTSFKEAALSLEAT 651

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G+IGL++      P I  N   +    +    T V +  G TIVL G+ K+   
Sbjct: 652 PNITPDGKIGLQLLITNGTPTIINNQVAIAEDSI---STNVIVEDGQTIVLGGVFKNRTN 708

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              + +P L  +P +G  FR    +  + E+ I  TP L+ 
Sbjct: 709 NGVDKVPFLGDLPYIGRAFRKDVRSNTKEELLIFITPKLIN 749


>gi|260767306|ref|ZP_05876246.1| MSHA biogenesis protein MshL [Vibrio furnissii CIP 102972]
 gi|260617713|gb|EEX42892.1| MSHA biogenesis protein MshL [Vibrio furnissii CIP 102972]
 gi|315181306|gb|ADT88220.1| MSHA biogenesis protein MshL [Vibrio furnissii NCTC 11218]
          Length = 547

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 19/184 (10%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA--------- 304
           SF +VL  +     +  L+ P +TA + Q A    G    Y T +SS  G+         
Sbjct: 340 SFSSVLSFMATQGDLNVLSSPRVTAANNQKAVIKVGSDEYYVTDLSSVVGSGDNTQAAPD 399

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD----MPSYR--VRK 355
             +T    G+ L  TP +   G + L +     EV++    +   D    +P  R  +R+
Sbjct: 400 VELTPFFSGISLDVTPQIDDKGNVLLHVHPSVIEVTQQDKEITYNDSTFTLPLARSSIRE 459

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +D+ +   +G  +V+ GL+K +       +P L  IP LG LFR++    E+TE+ I   
Sbjct: 460 SDSVIRAQNGDVVVIGGLMKTNTSNKVSKVPFLGDIPALGHLFRSTTELTEKTELVILLK 519

Query: 416 PFLV 419
           P +V
Sbjct: 520 PTVV 523


>gi|319955805|ref|YP_004167068.1| general secretion pathway protein d [Nitratifractor salsuginis DSM
           16511]
 gi|319418209|gb|ADV45319.1| general secretion pathway protein D [Nitratifractor salsuginis DSM
           16511]
          Length = 664

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 114/257 (44%), Gaps = 25/257 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSFAADFGGKFV------------S 240
           QV +K  + E+     + IG ++ ITG   +S    S   + GG+ V            S
Sbjct: 340 QVFIKARVVEINSKKARAIGAKYGITGGWLTSHGLISVGGNMGGEAVNISQRLMSLVQQS 399

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG-QSASFTSGGQHLYKTVS 299
           +   FS+  V   F+    +  L++  A   L+EP++   +  +S  F    + +  + +
Sbjct: 400 DDNAFSLSDVKSLFALGINIDLLQQDGAAHVLSEPSILCTNNMESELFVGETRSILTSST 459

Query: 300 SSTGATSVTTHDY-----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           +      ++ ++Y     G+ L   P + S  ++ L++   + E V   +  + P+    
Sbjct: 460 AGDNKNDLSRNNYEREDIGLTLKVKPRLSSNNKVALKVDA-IIEDVDDSSGYNSPTPTTT 518

Query: 355 KADT--TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           K        + +G T++L GL+K+        +P    IPI+G LFR+    + + ++ I
Sbjct: 519 KRTITTNATVRNGQTVILGGLIKNLTGAAHNKVPFFGDIPIIGRLFRDEGTAQRKVDLVI 578

Query: 413 AATPFLVKPVAMRDLSR 429
             TP++V+  +  DL+R
Sbjct: 579 YLTPYVVRRSS--DLTR 593


>gi|262064173|gb|ACY07155.1| IV [Enterobacteria phage f1]
          Length = 426

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 16/195 (8%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQ 292
           S GG F   G+ +       + AL+  +  + L+ P +  +SGQ  S + G       G+
Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGRNVPFITGR 297

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
              ++ + +    ++   + G+ +   P  ++ G I L I ++         A D+ + +
Sbjct: 298 VTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITNQ 357

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   TTV L  G T++L GL          G+P LSKIP++G LF +   + EE+ +++
Sbjct: 358 -RSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYV 416

Query: 413 AATPFLVKPVAMRDL 427
                LVK   +R L
Sbjct: 417 -----LVKATIVRAL 426


>gi|323189406|gb|EFZ74687.1| hypothetical protein ECRN5871_2294 [Escherichia coli RN587/1]
          Length = 512

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 107/227 (47%), Gaps = 39/227 (17%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           Q+ + V+I +V  + L+Q+G   S T     G+ +  S +  A+     +S   +F ++ 
Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQANISSSVISNASNFMIR- 333

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307
                     ++AL++ +  + L++P++  ++   A         Y  VS    A+  S+
Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382

Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGDMPSY--RV 353
           T+   G +L  TP +L               R+ L IQ + ++     NA D  S    V
Sbjct: 383 TS---GTLLRVTPRILDDNSNSLTGKRRERVRLLLDIQ-DGNQSSNQSNAQDASSTLPEV 438

Query: 354 RKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + ++ T E  L +G +++L G ++D     K+GIPLLS IP++G+LF
Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485


>gi|88797633|ref|ZP_01113222.1| type 4 fimbrial biogenesis protein PilQ [Reinekea sp. MED297]
 gi|88779805|gb|EAR10991.1| type 4 fimbrial biogenesis protein PilQ [Reinekea sp. MED297]
          Length = 709

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 13/209 (6%)

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGG--DFSVKGVLDRF-SFETVLHALERATAIRT 271
            +  I G S  P  +F   F     + G    F+V  + D     +  + ALE       
Sbjct: 505 IESDIYGGSPNPDLTFPDAFAVNLPATGNASSFAVGLIADNLLDLDLEISALESLGEAEV 564

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +    GQ+AS  SG    +    +  G T     + G+ L+ TP V    ++ L 
Sbjct: 565 VSQPKIVTSDGQAASIFSGQNVAFP---AEDGGTQFI--EAGLNLNVTPQVTPDDKVILT 619

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +   V++  +    G + +  V    T V + +G T+VL G+ + +  QL E  P+L  +
Sbjct: 620 LT--VNQDSLAAGGGAIDTNTVS---TQVLVENGVTLVLGGVYRTEKTQLVEKAPILGDL 674

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P++G LF+ +  + E +E+ I  TP L++
Sbjct: 675 PVVGNLFKRTTTSDERSELLIFITPKLIQ 703


>gi|300702828|ref|YP_003744429.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CFBP2957]
 gi|299070490|emb|CBJ41785.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CFBP2957]
          Length = 713

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+  +SS GATSV      + L  T
Sbjct: 550 LSALEADGRGKIISSPRVVTADNIKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVT 608

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++  +G    +  +   +   T V + +GGT+V+ G+   + +
Sbjct: 609 PKITPDGNVFLDV--DVNKDSVGTQTTNGFAINTKHVQTQVLVENGGTVVIGGIYTQNER 666

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
                +PLL  IP+LG LF+++    + TE+ +  TP
Sbjct: 667 TDVNKVPLLGDIPVLGNLFKSTAKTNDRTELLVFLTP 703


>gi|259907443|ref|YP_002647799.1| General secretion pathway protein D [Erwinia pyrifoliae Ep1/96]
 gi|224963065|emb|CAX54548.1| General secretion pathway protein D [Erwinia pyrifoliae Ep1/96]
 gi|283477275|emb|CAY73191.1| Type II secretion system protein outD [Erwinia pyrifoliae DSM
           12163]
          Length = 645

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 5/171 (2%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
           ++  + +AL+  +    LA P++  +    A FT G      T S +T       SV   
Sbjct: 414 NWAGLFNALQTNSQNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGVFNSVDRK 473

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIV 369
             G+ L   P +     + + I+ EVS      +   +  ++  R    TV + SG T+V
Sbjct: 474 SVGIKLKVKPQINKGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNTVLVESGKTVV 533

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + GLL     +++  +P+L KIP+LGALFR +   + +  + +   P +++
Sbjct: 534 VGGLLDTTHNKVESSVPVLGKIPLLGALFRYTTDKQSKRNLMLFIRPTIIR 584


>gi|89897873|ref|YP_514983.1| general secretion pathway protein D [Chlamydophila felis Fe/C-56]
 gi|89331245|dbj|BAE80838.1| general secretion pathway protein D [Chlamydophila felis Fe/C-56]
          Length = 755

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 101/233 (43%), Gaps = 23/233 (9%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           S++     L     +R  A P++  ++ Q+ +  +  + +   VS+           YG+
Sbjct: 525 SYDLAYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSIAVSADKEKAQYNRAQYGI 583

Query: 315 VLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           ++   P +      G+  + ++T+++    G N  + P    R     V +P G T+++ 
Sbjct: 584 MIKMLPVINVGEEDGKSYITLETDITFDTTGKNTNERPDVTRRNITNKVRIPDGETVIIG 643

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKPVAMRDL--- 427
           GL        ++GIP L +IP +G LF  +  +  +TE+F+  TP  L  P   ++    
Sbjct: 644 GLRCKHASDSQDGIPFLGEIPGIGKLFGMNSTSDSQTEMFVFITPKILDNPAEKKERQEE 703

Query: 428 ----SRPDDHYSV-------EDDAKAFF--FNRVNKIYGPKEASEVEGQNYKG 467
               SRP ++          E+ AKA       ++ I  P  AS+VEG  Y G
Sbjct: 704 AILSSRPGENAEFRKALCAGEEAAKAAHKKLELISAIELP--ASQVEGLEYDG 754


>gi|17547690|ref|NP_521092.1| fimbrial type-4 assembly signal peptide protein [Ralstonia
           solanacearum GMI1000]
 gi|17429995|emb|CAD16680.1| probable fimbrial type-4 assembly signal peptide protein [Ralstonia
           solanacearum GMI1000]
          Length = 714

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+  +SS GATSV+     + L  T
Sbjct: 551 LSALEADGRGKIISSPRVVTADNIKALIEQGTEVPYQQATSS-GATSVSFKKANLKLEVT 609

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++  +G    +  +   +   T V + +GGT+V+ G+   + +
Sbjct: 610 PKITPDGNVFLDV--DVNKDSLGTQTTNGFAINTKHVQTQVLVENGGTVVIGGIYTQNER 667

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
                +PLL  IP+LG LF+++    + TE+ +  TP
Sbjct: 668 TDVNKVPLLGDIPVLGNLFKSTAKTNDRTELLVFLTP 704


>gi|83748197|ref|ZP_00945224.1| PilQ [Ralstonia solanacearum UW551]
 gi|207744528|ref|YP_002260920.1| fimbrial type-4 assembly protein [Ralstonia solanacearum IPO1609]
 gi|83725165|gb|EAP72316.1| PilQ [Ralstonia solanacearum UW551]
 gi|206595934|emb|CAQ62861.1| fimbrial type-4 assembly protein [Ralstonia solanacearum IPO1609]
          Length = 713

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+  +SS GATSV      + L  T
Sbjct: 550 LSALEADGRGKIISSPRVVTADNIKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVT 608

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++  +G    +  +   +   T V + +GGT+V+ G+   + +
Sbjct: 609 PKITPDGNVFLDV--DVNKDSVGTQTTNGFAINTKHVQTQVLVENGGTVVIGGIYTQNER 666

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
                +PLL  IP+LG LF+++    + TE+ +  TP
Sbjct: 667 TDVNKVPLLGDIPVLGNLFKSTAKTNDRTELLVFLTP 703


>gi|207721850|ref|YP_002252288.1| fimbrial type-4 assembly protein [Ralstonia solanacearum MolK2]
 gi|206587017|emb|CAQ17601.1| fimbrial type-4 assembly protein [Ralstonia solanacearum MolK2]
          Length = 713

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+  +SS GATSV      + L  T
Sbjct: 550 LSALEADGRGKIISSPRVVTADNIKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVT 608

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++  +G    +  +   +   T V + +GGT+V+ G+   + +
Sbjct: 609 PKITPDGNVFLDV--DVNKDSVGTQTTNGFAINTKHVQTQVLVENGGTVVIGGIYTQNER 666

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
                +PLL  IP+LG LF+++    + TE+ +  TP
Sbjct: 667 TDVNKVPLLGDIPVLGNLFKSTAKTNDRTELLVFLTP 703


>gi|329943286|ref|ZP_08292060.1| bacterial type II and III secretion system family protein
           [Chlamydophila psittaci Cal10]
 gi|332287864|ref|YP_004422765.1| putative general secretion pathway protein D [Chlamydophila
           psittaci 6BC]
 gi|313848436|emb|CBY17440.1| probable general secretion pathway protein D [Chlamydophila
           psittaci RD1]
 gi|325507393|gb|ADZ19031.1| putative general secretion pathway protein D [Chlamydophila
           psittaci 6BC]
 gi|328814833|gb|EGF84823.1| bacterial type II and III secretion system family protein
           [Chlamydophila psittaci Cal10]
 gi|328915126|gb|AEB55959.1| general secretion pathway protein D [Chlamydophila psittaci 6BC]
          Length = 753

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 23/219 (10%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SP 325
           +R  A P++  ++ Q+ +  +  + +   VS+           YG+++   P +      
Sbjct: 537 VRINASPSVVTMN-QTPARIAIVEEMSIAVSADKEKAQYNRAQYGIMIKMLPVINVGDED 595

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G+  + ++T+++    G NA + P    R     V +P G T+++ GL        ++GI
Sbjct: 596 GKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVIIGGLRCKHASDSQDGI 655

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKPVAMRDL-------SRPDDHYSV- 436
           P L +IP +G LF  +     +TE+F+  TP  L  P+  ++        SRP ++    
Sbjct: 656 PFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILDNPIEKKERHEEAILSSRPGENTEFR 715

Query: 437 ------EDDAKAFF--FNRVNKIYGPKEASEVEGQNYKG 467
                 E+ AKA       ++ I  P  AS+V+G  Y G
Sbjct: 716 QALLAGEEAAKAAHKKLELISAIELP--ASQVQGLEYDG 752


>gi|88858661|ref|ZP_01133302.1| MSHA biogenesis protein MshL [Pseudoalteromonas tunicata D2]
 gi|88818887|gb|EAR28701.1| MSHA biogenesis protein MshL [Pseudoalteromonas tunicata D2]
          Length = 563

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 113/263 (42%), Gaps = 27/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVR-RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           K+ + L   + + QV L+  I EV  +D  +Q      + G       +FA    G+  +
Sbjct: 281 KEFLRLSEESLQRQVILEAKIIEVTLKDDYQQGVNWKEVLGHIGSTDLTFATTASGQIGN 340

Query: 241 E-----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                 GG  S+  V     F  V+  L     ++ L+ P +TA + Q A    G    +
Sbjct: 341 TITAGIGGVSSL--VFKNADFSGVVSLLSTQGDVQMLSNPRVTATNNQKAVIKVGQDEYF 398

Query: 296 KTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PV 340
            T  SST  T          S+T    G+ L  TP +   G + L +   V+E      V
Sbjct: 399 VTEVSSTTVTGNATTTTPEISLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETAEQRKV 458

Query: 341 IGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           I +N  +    +    +R++DT +   SG  +V+ GL++      +   PLL  +P+LG 
Sbjct: 459 ITLNNEEFVLPLAQSNIRESDTVIRAGSGEIVVIGGLMQTVTTDEESKTPLLGDMPVLGH 518

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LF++ R  +++ E+ I   P +V
Sbjct: 519 LFKSVRKRQDKKELIILIKPTVV 541


>gi|149190625|ref|ZP_01868893.1| type II secretory pathway, component EpsD [Vibrio shilonii AK1]
 gi|148835508|gb|EDL52477.1| type II secretory pathway, component EpsD [Vibrio shilonii AK1]
          Length = 674

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 11/176 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310
           +  ++ A+   +    L+ P++T +    ASF  G +    T S++    S     V   
Sbjct: 444 WTALITAVSSTSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSNNSNPFQTVDRK 503

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + G+ L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL
Sbjct: 504 EVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVL 562

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GL+ +   + +  +P L  IP LG LF ++    E+  + +      +KP  +RD
Sbjct: 563 GGLIDERAAESESKVPFLGDIPYLGRLFTSTSTTVEKKNLMV-----FIKPTIIRD 613


>gi|262280337|ref|ZP_06058121.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
 gi|262258115|gb|EEY76849.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
          Length = 717

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 88/177 (49%), Gaps = 7/177 (3%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311
           F  +  L AL+       ++ P +     Q A   +G Q  Y+T ++S   ++ TT   D
Sbjct: 543 FMLDLELSALQADGYGEVISTPKVMTADKQRARVATGQQVPYQTTTNSAAGSTATTSFKD 602

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIV 369
             + L  TP++   G+I +++  ++S+  +  +A  G++   +  + +T V + +G T++
Sbjct: 603 ALLSLDVTPSITPDGKIQMKL--DISKDSVADSAPNGELILNK-NQINTNVLVNNGETVI 659

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L G+ +      +  +P L  +P++G LFR    + ++ E+ I  TP +V    +R+
Sbjct: 660 LGGVFEQATSNSQTKVPFLGDLPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRN 716


>gi|152980977|ref|YP_001355054.1| PilQ type IV pilus assembly protein [Janthinobacterium sp.
           Marseille]
 gi|151281054|gb|ABR89464.1| PilQ type IV pilus assembly protein [Janthinobacterium sp.
           Marseille]
          Length = 686

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 4/167 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+  +SS GATSV+     + L  T
Sbjct: 523 LSALEADGKGKVISSPRVITADQLKALIEQGTELPYQQATSS-GATSVSFRKANLKLEVT 581

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++  +GV      +   +   T V + +GGT+V+ G+ +   +
Sbjct: 582 PQITPDGNVILDV--DVNKDTVGVETRSGFAIDTKHVKTQVLIDNGGTVVIGGIFQQTER 639

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKPVAMR 425
                +P    IP+ G LF+ +    ++TE+ I  TP  L   V++R
Sbjct: 640 DSVSKVPFFGDIPVFGNLFKTTGRTNDKTELLIFLTPKILTDKVSIR 686


>gi|114331780|ref|YP_748002.1| type IV pilus secretin PilQ [Nitrosomonas eutropha C91]
 gi|114308794|gb|ABI60037.1| type IV pilus secretin PilQ [Nitrosomonas eutropha C91]
          Length = 720

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 4/160 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE  +  R +A P L   +   AS   G +  ++T+S +           G  L  T
Sbjct: 552 LSALESDSQGRIIASPRLVTANRVEASIEQGTEIPFQTISVTRPQIQFKKAVLG--LKVT 609

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     I +++Q  V++   G +    P+   ++  T V + +GGT+V+ G+ +   +
Sbjct: 610 PQITPDDNIIMKLQ--VNQDTRGESTPAGPAIDTKQIVTEVLVENGGTVVIGGIFEQVEK 667

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +  IPLL  +P+LG LF+N+    ++ E+ I  TP ++
Sbjct: 668 RDRNQIPLLGDVPLLGNLFKNTAKRDDKRELLIFVTPRIL 707


>gi|193070395|ref|ZP_03051337.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli E110019]
 gi|192956334|gb|EDV86795.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli E110019]
          Length = 512

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 107/227 (47%), Gaps = 39/227 (17%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           Q+ + V+I +V  + L+Q+G   S T     G+ +  S +  A+     +S   +F ++ 
Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQANISSSVISNASNFMIR- 333

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307
                     ++AL++ +  + L++P++  ++   A         Y  VS    A+  S+
Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382

Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGDMPSY--RV 353
           T+   G +L  TP +L               R+ L IQ + ++     NA D  S    V
Sbjct: 383 TS---GTLLRVTPRILDGSSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSTLPEV 438

Query: 354 RKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + ++ T E  L +G +++L G ++D     K+GIPLLS IP++G+LF
Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485


>gi|51556732|gb|AAU06138.1| MshL [Pseudoalteromonas tunicata]
          Length = 563

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 27/250 (10%)

Query: 195 QVTLKVTIAEVR-RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-----GGDFSVK 248
           QV L+  I EV  +D  +Q      + G       +FA    G+  +      GG  S+ 
Sbjct: 294 QVILEAKIIEVTLKDDYQQGVNWKEVLGHIGSTDLTFATTASGQIGNTITAGIGGVSSL- 352

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--- 305
            V     F  V+  L     ++ L+ P +TA + Q A    G    + T  SST  T   
Sbjct: 353 -VFKNADFSGVVSLLSTQGDVQMLSNPRVTATNNQKAVIKVGQDEYFVTEVSSTTVTGNA 411

Query: 306 -------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGD----MP 349
                  S+T    G+ L  TP +   G + L +   V+E      VI +N  +    + 
Sbjct: 412 TTTTPEISLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETAEQRKVITLNNEEFVLPLA 471

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R++DT +   SG  +V+ GL++      +   PLL  +P+LG LF++ R  +++ E
Sbjct: 472 QSNIRESDTVIRAGSGEIVVIGGLMQTVTTDEESKTPLLGDMPVLGHLFKSVRKRQDKKE 531

Query: 410 IFIAATPFLV 419
           + I   P +V
Sbjct: 532 LIILIKPTVV 541


>gi|89093859|ref|ZP_01166805.1| putative MSHA biogenesis protein MshL [Oceanospirillum sp. MED92]
 gi|89081989|gb|EAR61215.1| putative MSHA biogenesis protein MshL [Oceanospirillum sp. MED92]
          Length = 524

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 103/246 (41%), Gaps = 24/246 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSE--GGDFSVKGVL 251
           QV ++  I EV  +   Q G   SI G   SG + +F     G    +  GG F  K  L
Sbjct: 255 QVVIEAKILEVTLNNGFQAGVNWSILGEPGSGNTANFTQSSVGLTNQDAIGGIF--KADL 312

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-------- 303
               F  V+  L     ++ L+ P ++ ++ Q A    G    + T   +T         
Sbjct: 313 SIGDFSAVIELLGSQGDVQVLSSPRVSTVNNQKAVIKVGTDEFFVTEVENTTTTGTSTTT 372

Query: 304 --ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGDMPSY--R 352
             +  +T    G+ L  TP + + G I L I   VSE V       +G +  ++P     
Sbjct: 373 SPSIELTPFFSGIALDVTPQISANGDIVLHIHPTVSEVVDQQKQISVGTDDFNIPLALSS 432

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           +R++D+ V   SG  IV+ GL+K      +   P L  IP +G LF+  R    +TE+ I
Sbjct: 433 IRESDSIVRAESGQVIVIGGLMKSSDSDTQAKTPGLGDIPGVGNLFKQKRQAGSKTELVI 492

Query: 413 AATPFL 418
              P L
Sbjct: 493 MLRPVL 498


>gi|120554944|ref|YP_959295.1| general secretion pathway protein D [Marinobacter aquaeolei VT8]
 gi|120324793|gb|ABM19108.1| general secretion pathway protein D [Marinobacter aquaeolei VT8]
          Length = 649

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 105/255 (41%), Gaps = 32/255 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-------------------- 234
           QV ++  I E+  ++  Q+G Q +    S+G       +                     
Sbjct: 349 QVMIEAAIVEISDELGDQLGVQLAAGDESAGSFPVLGTNLTSGQGMVGLNSVIGALVGDT 408

Query: 235 -----GGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                GG  V  G    D    G+L +    +    L    +I TL       I GQ+  
Sbjct: 409 IPQLAGGLTVGAGQRDEDGVTWGLLIQALSSSSAANLLSTPSIITLDNQESEIIVGQNVP 468

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI-QTEVSEPVIGVN- 344
           F + GQ       ++   T++   D G+ L  TPT+ + G + L + QT        V+ 
Sbjct: 469 FRT-GQSTVTGDGTTNPFTTIERRDVGLSLKVTPTISADGLVRLVVEQTTEDISTTSVDG 527

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           A D+ + + R+  TTV    G T+VL GL+KDD Q  K  +PLL  IP+LG LF +    
Sbjct: 528 ASDLITNK-REIKTTVLADDGETVVLGGLIKDDYQVSKSKVPLLGDIPVLGRLFSSESET 586

Query: 405 REETEIFIAATPFLV 419
           R +  + +   P ++
Sbjct: 587 RVKRNLLVFLRPTIM 601


>gi|254180385|ref|ZP_04886983.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1655]
 gi|254190347|ref|ZP_04896855.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pasteur
           52237]
 gi|254261204|ref|ZP_04952258.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1710a]
 gi|157938023|gb|EDO93693.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pasteur
           52237]
 gi|184210924|gb|EDU07967.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1655]
 gi|254219893|gb|EET09277.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1710a]
          Length = 445

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+      G + V      + L   
Sbjct: 286 LSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 344

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   GR+ L +  +V++  +G      P+   +   T VE+ +GGT+ + G+ + D +
Sbjct: 345 PQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 402

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 403 DDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 442


>gi|167571519|ref|ZP_02364393.1| type II/III secretion system protein [Burkholderia oklahomensis
           C6786]
          Length = 555

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  ++++  +G      P+
Sbjct: 426 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DIAKDSVGEETASGPA 483

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+
Sbjct: 484 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRALRAQRSEL 543

Query: 411 FIAATPFLV 419
            +  TP +V
Sbjct: 544 VVYITPTVV 552


>gi|51594667|ref|YP_068858.1| type III secretion protein EscC/SpiA, outer membrane pore [Yersinia
           pseudotuberculosis IP 32953]
 gi|51587949|emb|CAH19552.1| possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia pseudotuberculosis IP 32953]
          Length = 523

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 28/220 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ + VTI +V    + Q+G   S + S  G   SF + F  K  +EG  FS   + D  
Sbjct: 297 QIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA-KNNAEG--FSTV-IGDTG 352

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +F   L+AL++ +  R L++P++  ++   A          K            T   G 
Sbjct: 353 NFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKLQGEKVAKLESVTS--GS 410

Query: 315 VLHFTPTVLSPGRIGLRIQTE-VSEPVIGVNAGD------------MPSYRVRKADTTVE 361
           +L  TP +         I+TE V E ++ +N  D            +P  R     T   
Sbjct: 411 LLRVTPRM---------IETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQAT 461

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           L  G +++L G ++D   + +  IPLL  IP+LG LFR++
Sbjct: 462 LQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRST 501


>gi|300771988|ref|ZP_07081859.1| type II general secretion pathway D protein [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761374|gb|EFK58199.1| type II general secretion pathway D protein [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 624

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 24/242 (9%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSI------TGSSSGPSKSFAADFGG-----KFVSEGGD 244
           V ++VT+ ++ +    + G +  +      TG S  P+  F    G       F+ +   
Sbjct: 382 VLIEVTLLDINKGNTVKTGIKMGVADSIPQTGGSLFPALDFTFGAGSINRFLSFLGKNNA 441

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302
           F++  V    +F   L ALE    +   + P L+ ++G  A  + G +  YKT + +   
Sbjct: 442 FNLGRVTP--NFYVTLSALEANKNVEMRSIPKLSTLNGHQAKLSIGSKRYYKTTTQNVIP 499

Query: 303 -------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                       T  +  + +   P +    +I L+I  ++S+ V  V  G  P     K
Sbjct: 500 SLQTTTVTTEQFTPVEANMNIDIKPVISGDDQITLKITVDISDFVGTVKDGQPPPTSTSK 559

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIA 413
            ++ +   +   IVL G+ + +      G+PLLS+IP+L  LF  R    N+  + +FI 
Sbjct: 560 FESIIRARNEDMIVLGGIERTENSSSGSGVPLLSRIPVLKWLFSSREKTTNKVVSVVFIK 619

Query: 414 AT 415
            T
Sbjct: 620 PT 621


>gi|197336466|ref|YP_002157259.1| general secretion pathway protein D [Vibrio fischeri MJ11]
 gi|197317956|gb|ACH67403.1| general secretion pathway protein D [Vibrio fischeri MJ11]
          Length = 678

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 16/159 (10%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPT 321
           L+ P++T +    ASF  G     + V   TG+T+ +++D           G+ L   P 
Sbjct: 459 LSSPSITVMDNGEASFIVG-----EEVPVLTGSTAGSSNDNPFQTVDRKEVGIKLKVVPQ 513

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + 
Sbjct: 514 INEGDSVRLDIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALES 572

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  +P L  IP+LG LF+++    E+  + +   P +++
Sbjct: 573 ESKVPFLGDIPVLGYLFKSTSTQVEKKNLMVFIKPTIIR 611


>gi|156975932|ref|YP_001446839.1| hypothetical protein VIBHAR_03698 [Vibrio harveyi ATCC BAA-1116]
 gi|156527526|gb|ABU72612.1| hypothetical protein VIBHAR_03698 [Vibrio harveyi ATCC BAA-1116]
          Length = 544

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 34/255 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------GKFVSEGGDF 245
           QV L+  I EV      Q G   S   +S G S S   D           G  +  GG  
Sbjct: 270 QVILEAKILEVTLSDGYQQGINWSNMSASIGNSGSILVDRNPAKLPLDAIGTLL--GGQT 327

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG- 303
           +V       +FE V+  +     +  L+ P +TA + Q +    G    + T +SS+ G 
Sbjct: 328 NV--TFSDGNFEAVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGN 385

Query: 304 --------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------ 346
                      +T    G+ L  TP + + G + L +     EV E +  +N G      
Sbjct: 386 GENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQLNLGGDFQNI 445

Query: 347 DMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            +P  +  +R++D+ +    G  +V+ GL+K    +    +P L  +P LG LFRN    
Sbjct: 446 QLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNV 505

Query: 405 REETEIFIAATPFLV 419
            ++TE+ I   P +V
Sbjct: 506 TQKTELVILLKPTVV 520


>gi|22124429|ref|NP_667852.1| secretin [Yersinia pestis KIM 10]
 gi|45440265|ref|NP_991804.1| type III secretion protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|150260696|ref|ZP_01917424.1| possible type III secretion protein [Yersinia pestis CA88-4125]
 gi|165926705|ref|ZP_02222537.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|167402490|ref|ZP_02307945.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|218927462|ref|YP_002345337.1| putative type III secretion protein [Yersinia pestis CO92]
 gi|229836509|ref|ZP_04456675.1| possible type III secretion protein [Yersinia pestis Pestoides A]
 gi|229840118|ref|ZP_04460277.1| possible type III secretion protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842199|ref|ZP_04462354.1| possible type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904060|ref|ZP_04519173.1| possible type III secretion protein [Yersinia pestis Nepal516]
 gi|294502332|ref|YP_003566394.1| possible type III secretion protein [Yersinia pestis Z176003]
 gi|21957215|gb|AAM84103.1|AE013653_3 putative secretin [Yersinia pestis KIM 10]
 gi|45435121|gb|AAS60681.1| possible type III secretion protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|115346073|emb|CAL18941.1| possible type III secretion protein [Yersinia pestis CO92]
 gi|149290104|gb|EDM40181.1| possible type III secretion protein [Yersinia pestis CA88-4125]
 gi|165921328|gb|EDR38552.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|167048140|gb|EDR59548.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|229679830|gb|EEO75933.1| possible type III secretion protein [Yersinia pestis Nepal516]
 gi|229690509|gb|EEO82563.1| possible type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696484|gb|EEO86531.1| possible type III secretion protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706193|gb|EEO92201.1| possible type III secretion protein [Yersinia pestis Pestoides A]
 gi|262360412|gb|ACY57133.1| possible type III secretion protein [Yersinia pestis D106004]
 gi|262364362|gb|ACY60919.1| possible type III secretion protein [Yersinia pestis D182038]
 gi|294352791|gb|ADE63132.1| possible type III secretion protein [Yersinia pestis Z176003]
 gi|320013878|gb|ADV97449.1| putative type III secretion protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 523

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 28/220 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ + VTI +V    + Q+G   S + S  G   SF + F  K  +EG  FS   + D  
Sbjct: 297 QIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA-KNNAEG--FSTV-IGDTG 352

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +F   L+AL++ +  R L++P++  ++   A          K            T   G 
Sbjct: 353 NFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKLQGEKVAKLESVTS--GS 410

Query: 315 VLHFTPTVLSPGRIGLRIQTE-VSEPVIGVNAGD------------MPSYRVRKADTTVE 361
           +L  TP +         I+TE V E ++ +N  D            +P  R     T   
Sbjct: 411 LLRVTPRM---------IETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQAT 461

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           L  G +++L G ++D   + +  IPLL  IP+LG LFR++
Sbjct: 462 LQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRST 501


>gi|167847616|ref|ZP_02473124.1| type IV pilus secretin PilQ [Burkholderia pseudomallei B7210]
          Length = 460

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+      G + V      + L   
Sbjct: 301 LSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 359

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   GR+ L +  +V++  +G      P+   +   T VE+ +GGT+ + G+ + D +
Sbjct: 360 PQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 417

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 418 DDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 457


>gi|254300620|ref|ZP_04968065.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 406e]
 gi|157810585|gb|EDO87755.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 406e]
          Length = 455

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+      G + V      + L   
Sbjct: 296 LSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 354

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   GR+ L +  +V++  +G      P+   +   T VE+ +GGT+ + G+ + D +
Sbjct: 355 PQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 412

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 413 DDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 452


>gi|91787225|ref|YP_548177.1| type II and III secretion system protein [Polaromonas sp. JS666]
 gi|91696450|gb|ABE43279.1| type II and III secretion system protein [Polaromonas sp. JS666]
          Length = 747

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 41/237 (17%)

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS----- 281
           + S  A+ G   ++ G    V G L RF        LE   A   L+ P L  +      
Sbjct: 473 APSTGANLGVAHLTNG--VYVLGFLARF--------LEANGAGNILSTPNLLTLDNEEAR 522

Query: 282 ---GQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
              GQ+  F +G    Y   ++S G+     ++   D G+ L   P +   G + ++I  
Sbjct: 523 IVIGQNVPFITG---QYTNANTSAGSVNPFQTIERKDVGLTLRVKPQISENGTVKMQIFQ 579

Query: 335 EVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           EVS  +P   +N+        R  ++ V +  G  +VL GLL+D+     E +P L  IP
Sbjct: 580 EVSSVQPS-SINSATGLITNKRSIESNVLVDDGAIVVLGGLLQDEYSGNVEKVPGLGDIP 638

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--------LSRPDDHYSVEDDAK 441
           ILG LF+    +R++T + +      ++PV +RD        + R D   +V+ DA+
Sbjct: 639 ILGHLFKGETRSRKKTNLMV-----FLRPVVVRDAPSSESLSMDRYDLMRAVQKDAQ 690


>gi|329905849|ref|ZP_08274237.1| Fimbrial assembly protein pilQ precursor [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547489|gb|EGF32305.1| Fimbrial assembly protein pilQ precursor [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 327

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +     Q A    G +  Y+  +SS GATSV      + L  T
Sbjct: 164 LSALEADGRGKVISSPRVVTADQQQALIEQGEEIPYQKATSS-GATSVEFKKANLKLEVT 222

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G I L +  +V++   G  A    +   +   T V++ +GGT+VL G+      
Sbjct: 223 PQITPDGNIILTV--DVNKDSRGAPAPGGFAINTKHVKTNVQVENGGTVVLGGIFTQREL 280

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                IP    IP++G LF+ +    ++TE+ I  TP +V
Sbjct: 281 DSVTKIPFFGDIPVVGNLFKTTGRTNDKTELLIFITPKIV 320


>gi|309782882|ref|ZP_07677602.1| type IV pilus biogenesis protein PilQ [Ralstonia sp. 5_7_47FAA]
 gi|308918306|gb|EFP63983.1| type IV pilus biogenesis protein PilQ [Ralstonia sp. 5_7_47FAA]
          Length = 719

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+  +SS GATSV+     + L  T
Sbjct: 556 LSALEADGRGKIVSSPRVVTADNIKALIEQGTEIPYQQATSS-GATSVSFKKANLKLEVT 614

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G I L +  +V++  +G+   +  +   +   T V + +GGT+V+ G+   + +
Sbjct: 615 PKITPDGNIFLDV--DVNKDSVGIQTTNGFAIDTKHVQTQVLVENGGTVVIGGIYTQNER 672

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
                +PLL  IP+LG LF+++      TE+ +  TP
Sbjct: 673 TDINKVPLLGDIPVLGNLFKSTSKINNRTELLVFLTP 709


>gi|209520029|ref|ZP_03268806.1| type IV pilus secretin PilQ [Burkholderia sp. H160]
 gi|209499514|gb|EDZ99592.1| type IV pilus secretin PilQ [Burkholderia sp. H160]
          Length = 569

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 19/240 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAA-------DFGGKFVSEGGDFS 246
           QV ++  I E      + +G + S+ G+S+ G SK  +        D   + +S G D +
Sbjct: 333 QVLIEAQIVEGDHGFSRNLGVRLSLAGTSADGTSKGLSGGADGTVYDLSARPIS-GFDAA 391

Query: 247 VKGVLDRFSFETV------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             G L  F+          L ALE     + ++ P +       A    G +  Y+    
Sbjct: 392 TAG-LTLFAAHATRLLNIELSALESEGHGKIVSSPRVVTADRMKAIVEQGTELPYQ-AKV 449

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G + V      + L   P ++  GR+ L +  +V++  +G      P+   +   T V
Sbjct: 450 GQGISGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGAQTDAGPAINTKHVQTRV 507

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           E+  GGT+ + G+ +   +   E +P+L KIPILGALFR+   +   +E+ +  TP +V+
Sbjct: 508 EVEDGGTVSIGGIYETSDRDDVERVPILGKIPILGALFRDRTHSDTRSELAVFITPRVVR 567


>gi|262377049|ref|ZP_06070275.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
 gi|262308087|gb|EEY89224.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
          Length = 710

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 7/180 (3%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           L  F  +  L AL+       ++ P +     Q A+  SG +  Y++   S    + TT 
Sbjct: 533 LSDFMLDLELSALQADGYGEVISTPKVLTADKQKATVESGVEVPYQSTEGSGANATATTE 592

Query: 311 DYGVVLHF--TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGG 366
              VVL    TP++   G++ + +    S+ + GV    M  Y + K   +T V + +G 
Sbjct: 593 FKDVVLKLDVTPSITPDGKVQMSLDIS-SDSIAGVTP--MGEYYLNKNRLNTNVLVENGE 649

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T+VL G+ + +    +  +P L  IP LG LFR    +  + E+ I  TP +V     R+
Sbjct: 650 TVVLGGIFEQETLNNQTKVPFLGDIPYLGRLFRKDVKSDNKRELLIFVTPRIVNDSVSRN 709


>gi|126454219|ref|YP_001067989.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106a]
 gi|242314362|ref|ZP_04813378.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106b]
 gi|126227861|gb|ABN91401.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106a]
 gi|242137601|gb|EES24003.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106b]
          Length = 465

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+      G + V      + L   
Sbjct: 306 LSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 364

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   GR+ L +  +V++  +G      P+   +   T VE+ +GGT+ + G+ + D +
Sbjct: 365 PQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 422

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 423 DDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 462


>gi|332535460|ref|ZP_08411243.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035105|gb|EGI71619.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Pseudoalteromonas haloplanktis ANT/505]
          Length = 639

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 115/276 (41%), Gaps = 41/276 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVS 240
           KV++ + +    QV + V + EV +  LKQ  ++  I+  S+G  K  A  FG  G    
Sbjct: 340 KVLSSIEVEDLPQVRVSVQLYEVNQRRLKQ--WRPDISVLSNGYEKE-AGLFGRDGMTER 396

Query: 241 EGGDFSVKGVLD---------------RFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           E G  +++  L                +F+ + +   LE+    RTL+ PT+T ++G+SA
Sbjct: 397 ESGSATIENALQLIGGQLTNNLQLSTSQFAIDMLFSLLEQEGISRTLSRPTITVLAGESA 456

Query: 286 SFTSGGQHLYKTVSSSTGATS------------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            F  GG+    T  S +G TS                 +GV L+    V    RI L + 
Sbjct: 457 VFKVGGEVPVPTSYSPSGITSGQQGSSGSVFSGTEFKSFGVELNVRAMVDDKDRITLDLN 516

Query: 334 TEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             +S P   + A          +  ++  R   T+  L  G  +++ GL+  D     + 
Sbjct: 517 PVISLPDTTLTAEIAQSTGSSLNSSAFNTRSMQTSTRLKDGQPLIIGGLISTDNNASHDF 576

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P  +   +LG L   +  +    E+ I  TP LV+
Sbjct: 577 VPDGNGNSMLGKLSETTSKSENNRELIIVVTPNLVR 612


>gi|241664484|ref|YP_002982844.1| type IV pilus secretin PilQ [Ralstonia pickettii 12D]
 gi|240866511|gb|ACS64172.1| type IV pilus secretin PilQ [Ralstonia pickettii 12D]
          Length = 721

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+  +SS GATSV+     + L  T
Sbjct: 558 LSALEADGRGKIVSSPRVVTADNIKALIEQGTEIPYQQATSS-GATSVSFKKANLKLEVT 616

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G I L +  +V++  +G+   +  +   +   T V + +GGT+V+ G+   + +
Sbjct: 617 PKITPDGNIFLDV--DVNKDSVGIQTTNGFAIDTKHVQTQVLVENGGTVVIGGIYTQNER 674

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
                +PLL  IP+LG LF+++      TE+ +  TP
Sbjct: 675 TDINKVPLLGDIPVLGNLFKSTSKINNRTELLVFLTP 711


>gi|59713081|ref|YP_205857.1| general secretion pathway protein D [Vibrio fischeri ES114]
 gi|59481182|gb|AAW86969.1| general secretion pathway protein D [Vibrio fischeri ES114]
          Length = 673

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 8/171 (4%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           ++ ++ A+   +    L+ P++T +    ASF  G + +     S++G+       +V  
Sbjct: 439 WKALVTAVSTDSNSNILSSPSITVMDNGEASFIVG-EEVPVLTGSTSGSNNENPFQTVDR 497

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            + G+ L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +V
Sbjct: 498 KEVGIKLKVVPQINEGDSVRLDIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLV 556

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L GL+ +   + +  +P L  IP+LG LF+++    E+  + +   P +++
Sbjct: 557 LGGLIDERALESESKVPFLGDIPVLGHLFKSTSTRVEKKNLMVFIKPTIIR 607


>gi|53720777|ref|YP_109763.1| putative secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|52211191|emb|CAH37180.1| putative secretion system protein [Burkholderia pseudomallei
           K96243]
          Length = 442

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+      G + V      + L   
Sbjct: 283 LSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 341

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   GR+ L +  +V++  +G      P+   +   T VE+ +GGT+ + G+ + D +
Sbjct: 342 PQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 399

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 400 DDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 439


>gi|167740501|ref|ZP_02413275.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
 gi|167826105|ref|ZP_02457576.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
 gi|167896189|ref|ZP_02483591.1| type II/III secretion system protein [Burkholderia pseudomallei
           7894]
 gi|167904571|ref|ZP_02491776.1| type II/III secretion system protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167912835|ref|ZP_02499926.1| type II/III secretion system protein [Burkholderia pseudomallei
           112]
 gi|167920795|ref|ZP_02507886.1| type II/III secretion system protein [Burkholderia pseudomallei
           BCC215]
 gi|254198490|ref|ZP_04904911.1| type IV pilus secretin PilQ [Burkholderia pseudomallei S13]
 gi|254201342|ref|ZP_04907706.1| type IV pilus secretin PilQ [Burkholderia mallei FMH]
 gi|147747236|gb|EDK54312.1| type IV pilus secretin PilQ [Burkholderia mallei FMH]
 gi|169655230|gb|EDS87923.1| type IV pilus secretin PilQ [Burkholderia pseudomallei S13]
          Length = 457

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+      G + V      + L   
Sbjct: 298 LSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 356

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   GR+ L +  +V++  +G      P+   +   T VE+ +GGT+ + G+ + D +
Sbjct: 357 PQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 414

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 415 DDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 454


>gi|209694066|ref|YP_002261994.1| type IV pilus, mannose-sensitive hemagglutinin D (MSHD) [Aliivibrio
           salmonicida LFI1238]
 gi|208008017|emb|CAQ78154.1| type IV pilus, mannose-sensitive hemagglutinin D (MSHD) [Aliivibrio
           salmonicida LFI1238]
          Length = 546

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 23/187 (12%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG---------A 304
           +F  VL  ++    +  L+ P +TA + Q A    G    + T VSS TG          
Sbjct: 338 NFSAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGRDEYFVTEVSSVTGNGDNSNASPE 397

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV----SEPVIGVNAGD--------MPSYR 352
            ++T    G+ L  TP +   G + L +   V    +E  I ++ GD        +    
Sbjct: 398 VTLTPFFSGISLDVTPQIDDKGNVMLHVHPSVIDVETETKI-IDLGDVGGVLELPLAKSS 456

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           +R++D+ +   SG  +V+ GL+K         +P L  IP+LG LFRN      +TE+ I
Sbjct: 457 IRESDSVIRAKSGDVVVIGGLMKSQTVDQVSKVPFLGDIPVLGHLFRNVSQLTTKTELVI 516

Query: 413 AATPFLV 419
              P +V
Sbjct: 517 LLKPTVV 523


>gi|195952458|ref|YP_002120748.1| general secretion pathway protein D [Hydrogenobaculum sp. Y04AAS1]
 gi|195932070|gb|ACG56770.1| general secretion pathway protein D [Hydrogenobaculum sp. Y04AAS1]
          Length = 660

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 87/183 (47%), Gaps = 10/183 (5%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTHDY---GVV 315
           L  LE+    + ++ P +  +  + A       + Y T    +     + T+DY   G+ 
Sbjct: 463 LSLLEQGNGFKIISNPKVLTLDNEEAIIKEAQVYPYVTGTQYNINGFPILTYDYKDIGLE 522

Query: 316 LHFTPTVLSPG-RIGLRIQTEVSEPVIGVN-AGD---MPSYRVRKADTTVELPSGGTIVL 370
           L   PTV     R+G+ +  +        N AG    +P    R  ++ V + SG T++L
Sbjct: 523 LDVIPTVSKDNIRLGINLNLQDITGFTNTNVAGQTVPIPITTDRVLNSEVVVKSGQTVIL 582

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429
            GL+ ++  +   GIP+L  IP+LG LF+      +++ +FI  TP+++K P  +  +++
Sbjct: 583 GGLVSNNTIKNISGIPILQDIPVLGNLFKYQNRENKKSTLFIFITPYIIKSPDQLAKITK 642

Query: 430 PDD 432
            ++
Sbjct: 643 ANE 645


>gi|134096276|ref|YP_001101351.1| fimbrial assembly protein PilQ [Herminiimonas arsenicoxydans]
 gi|133740179|emb|CAL63230.1| Putative type IV pilus biogenesis secretin PilQ [Herminiimonas
           arsenicoxydans]
          Length = 697

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+  +SS GATSV+     + L  T
Sbjct: 534 LSALEADGKGKIISSPRVITADQLKALIEQGTELPYQQATSS-GATSVSFRKANLRLEVT 592

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++  +GV      +   +   T V + +GGT+V+ G+ +   +
Sbjct: 593 PQITPDGNVILDV--DVNKDSVGVETRSGFAIDTKHVKTQVLIDNGGTVVIGGIFQQTER 650

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
                +P    IP+LG LF+ +    ++TE+ I  TP
Sbjct: 651 DSVSKVPFFGDIPVLGNLFKTTGRTNDKTELLIFLTP 687


>gi|94266027|ref|ZP_01289748.1| type II and III secretion system protein [delta proteobacterium
           MLMS-1]
 gi|93453422|gb|EAT03844.1| type II and III secretion system protein [delta proteobacterium
           MLMS-1]
          Length = 577

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 16/180 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--- 312
           FE +L A+E       L+ P ++ ++GQ A    G    Y   +SST      TH+    
Sbjct: 398 FELLLEAIETQGETNVLSNPRISIMNGQPALINVGETVRYIAEASSTIQDQGVTHNIITG 457

Query: 313 ----GVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD-----MPSYRVRKADTT 359
               G+ +   P ++    I L +    ++    P+     GD     +P   +R+  T 
Sbjct: 458 TVMSGLSMSVLPIIVDDNEIILSMTPMTTQLAPGPIPREKFGDNMLVQLPQINIREMQTM 517

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V + +G T+++ GL+ +      + +PLL  IP LG LFR+   ++E+ E+ I   P ++
Sbjct: 518 VRVANGDTLMIGGLIDEYETTESKRVPLLGDIPGLGKLFRHDTRSKEKKELVIMLRPRIL 577


>gi|237703055|ref|ZP_04533536.1| general secretion pathway protein D [Escherichia sp. 3_2_53FAA]
 gi|226902319|gb|EEH88578.1| general secretion pathway protein D [Escherichia sp. 3_2_53FAA]
          Length = 654

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTVIRD----DDVY 604


>gi|167721530|ref|ZP_02404766.1| type II/III secretion system protein [Burkholderia pseudomallei
           DM98]
 gi|167817709|ref|ZP_02449389.1| type II/III secretion system protein [Burkholderia pseudomallei 91]
          Length = 454

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+      G + V      + L   
Sbjct: 295 LSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 353

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   GR+ L +  +V++  +G      P+   +   T VE+ +GGT+ + G+ + D +
Sbjct: 354 PQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 411

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 412 DDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 451


>gi|332524328|ref|ZP_08400549.1| fimbrial biogenesis protein [Rubrivivax benzoatilyticus JA2]
 gi|332107658|gb|EGJ08882.1| fimbrial biogenesis protein [Rubrivivax benzoatilyticus JA2]
          Length = 719

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 150/354 (42%), Gaps = 36/354 (10%)

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM-TLRRFIAD 133
           TKA+VV        L G+N GQ+        G       IL  R     E  T + F++D
Sbjct: 386 TKAEVVAKG-----LLGQNQGQS--------GGSSHASRILSPRGSVIFETRTNQLFVSD 432

Query: 134 SNIRVEMVSDTVV-LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----KVMNLL 188
              ++E ++  +  +   VR +    R VE  +TF    G    AN++ K      + + 
Sbjct: 433 IPSKLEEITQLIAKIDIPVRQVMIEARIVEADDTFGRALGVKLGANAAPKFYNNGGVGVG 492

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV- 247
                D V  +         +LK  GF    T   + P+   +++F G  V+    F+V 
Sbjct: 493 VGGNYDDVGYQTG------QLLKDPGFNS--TQFVNLPANISSSNFSG--VTSAPTFAVS 542

Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
                L RF     L ALE     + ++ P +   + Q  +    G+ L    S+S+GAT
Sbjct: 543 LFNSSLTRF-LNLELSALEADGKGKIVSSPRVIT-ADQEKALIEQGEELPYQESTSSGAT 600

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           S++     + L  TP +   G + L +  +V++  +G +     +   +   T V + +G
Sbjct: 601 SISFRKASLKLEVTPQITPEGNVILDV--DVNKDSVGRSTAAGFAIDTKHVKTKVLVENG 658

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GT+V+ G+           +PLL  IP LG LFR++     +TE+ +  TP +V
Sbjct: 659 GTVVIGGIYTQSESTDVSKVPLLGDIPGLGVLFRSTTRTSSKTELLVFLTPKIV 712


>gi|218886129|ref|YP_002435450.1| type II and III secretion system protein [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757083|gb|ACL07982.1| type II and III secretion system protein [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 552

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 11/192 (5%)

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
           KS A   G  F + GG+            E  L AL+ ++ I  L+ P+++ +  Q A +
Sbjct: 337 KSGAGSLGLMFGTIGGNM----------LEMQLSALQESSKINILSSPSISTLDNQMA-Y 385

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
           T  G+ +    +++ G   V   D  + L  TP V+    + L++  +  E  +      
Sbjct: 386 TENGEKVPYVSTNAQGDREVKFEDAVLRLEITPHVIDDKNLKLKVLVKKDEVDLTRTVEG 445

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P    ++ +TT+ +  G TIV++GL KD     + G+P L  +  LG LF +     + 
Sbjct: 446 NPFIIKKQTETTLIVQDGETIVISGLTKDRKSTGRSGVPGLHDVEGLGWLFGSDSKASKL 505

Query: 408 TEIFIAATPFLV 419
            E+ I  TP ++
Sbjct: 506 EEVLIFITPAVL 517


>gi|77163786|ref|YP_342311.1| fimbrial assembly protein pilQ precursor [Nitrosococcus oceani ATCC
           19707]
 gi|254435512|ref|ZP_05049019.1| type IV pilus secretin PilQ subfamily, putative [Nitrosococcus
           oceani AFC27]
 gi|76882100|gb|ABA56781.1| Fimbrial assembly protein pilQ precursor [Nitrosococcus oceani ATCC
           19707]
 gi|207088623|gb|EDZ65895.1| type IV pilus secretin PilQ subfamily, putative [Nitrosococcus
           oceani AFC27]
          Length = 699

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 4/141 (2%)

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           S Q  +    G  +    +SS+GATSV+     + L  TP +    RI + +   V++  
Sbjct: 557 SNQKEAIIEQGTEIPYQRASSSGATSVSFKKAVLSLTVTPQITPDDRIIMDLG--VTKDS 614

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +G     +PS   RK  T V + +G T+VL G+ + +  +    IP L  +P  G LFR+
Sbjct: 615 VGKVFNGVPSINTRKVATQVLVNNGQTVVLGGIYEQEKNRAVRRIPFLGDLPYAGILFRD 674

Query: 401 -SRFNREETEIFIAATPFLVK 420
            S FN +  E+ I  TP ++K
Sbjct: 675 KSEFNNKR-ELLIFVTPKIIK 694


>gi|187930316|ref|YP_001900803.1| type IV pilus secretin PilQ [Ralstonia pickettii 12J]
 gi|187727206|gb|ACD28371.1| type IV pilus secretin PilQ [Ralstonia pickettii 12J]
          Length = 721

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+  +SS GATSV+     + L  T
Sbjct: 558 LSALEADGRGKIVSSPRVVTADNIKALIEQGTEIPYQQATSS-GATSVSFKKANLKLEVT 616

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G I L +  +V++  +G+   +  +   +   T V + +GGT+V+ G+   + +
Sbjct: 617 PKITPDGNIFLDV--DVNKDSVGIQTTNGFAIDTKHVQTQVLVENGGTVVIGGIYTQNER 674

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
                +PLL  IP+LG LF+++      TE+ +  TP
Sbjct: 675 TDINKVPLLGDIPVLGNLFKSTSKINNRTELLVFLTP 711


>gi|108810017|ref|YP_653933.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|108813572|ref|YP_649339.1| type III secretion protein [Yersinia pestis Nepal516]
 gi|145600961|ref|YP_001165037.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|165936434|ref|ZP_02225002.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010446|ref|ZP_02231344.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166213955|ref|ZP_02239990.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167419179|ref|ZP_02310932.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426134|ref|ZP_02317887.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167469427|ref|ZP_02334131.1| possible type III secretion protein [Yersinia pestis FV-1]
 gi|270488950|ref|ZP_06206024.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis KIM D27]
 gi|108777220|gb|ABG19739.1| type III secretion protein [Yersinia pestis Nepal516]
 gi|108781930|gb|ABG15988.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|145212657|gb|ABP42064.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|165915550|gb|EDR34159.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165990536|gb|EDR42837.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204930|gb|EDR49410.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166963173|gb|EDR59194.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167054845|gb|EDR64647.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|270337454|gb|EFA48231.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis KIM D27]
          Length = 505

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 28/220 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ + VTI +V    + Q+G   S + S  G   SF + F  K  +EG  FS   + D  
Sbjct: 279 QIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA-KNNAEG--FSTV-IGDTG 334

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +F   L+AL++ +  R L++P++  ++   A          K            T   G 
Sbjct: 335 NFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKLQGEKVAKLESVTS--GS 392

Query: 315 VLHFTPTVLSPGRIGLRIQTE-VSEPVIGVNAGD------------MPSYRVRKADTTVE 361
           +L  TP +         I+TE V E ++ +N  D            +P  R     T   
Sbjct: 393 LLRVTPRM---------IETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQAT 443

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           L  G +++L G ++D   + +  IPLL  IP+LG LFR++
Sbjct: 444 LQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRST 483


>gi|15596579|ref|NP_250073.1| type II secretion system protein [Pseudomonas aeruginosa PAO1]
 gi|9947326|gb|AAG04771.1|AE004567_10 probable type II secretion system protein [Pseudomonas aeruginosa
           PAO1]
          Length = 759

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 17/178 (9%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATS----VTTH 310
           + A+     +R LA P +   SG+ A+   G      T      S++ G+T+    +   
Sbjct: 550 IQAMADNQRVRVLATPRILVKSGEQANINVGRDIPIPTAQVNDDSTTAGSTNLRNEIAYR 609

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYRVRKADTTVEL 362
             G +L+  P V S  R+ L +  E+S+       G          P       +T++ L
Sbjct: 610 STGTILNVAPVVYSDSRVDLTVSQELSDSGGSSGGGGKASGGGISAPEISRTSLETSLTL 669

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            SGG++++ GL++D+I     G+PLL  IP +G LF   +  +   E+ +   P++++
Sbjct: 670 KSGGSVLMGGLIRDNITDSNAGVPLLKDIPGIGFLFGRQKAVKTREEVIMLIQPYVLE 727


>gi|67641888|ref|ZP_00440653.1| type IV pilus secretin PilQ [Burkholderia mallei GB8 horse 4]
 gi|121600460|ref|YP_994488.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|126439652|ref|YP_001060705.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 668]
 gi|126450056|ref|YP_001082319.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|226198301|ref|ZP_03793872.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pakistan 9]
 gi|251767786|ref|ZP_02268424.2| type IV pilus secretin PilQ [Burkholderia mallei PRL-20]
 gi|254174977|ref|ZP_04881638.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|254206684|ref|ZP_04913035.1| type IV pilus secretin PilQ [Burkholderia mallei JHU]
 gi|121229270|gb|ABM51788.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|126219145|gb|ABN82651.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 668]
 gi|126242926|gb|ABO06019.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|147752226|gb|EDK59292.1| type IV pilus secretin PilQ [Burkholderia mallei JHU]
 gi|160696022|gb|EDP85992.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|225929821|gb|EEH25837.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pakistan 9]
 gi|238522900|gb|EEP86342.1| type IV pilus secretin PilQ [Burkholderia mallei GB8 horse 4]
 gi|243061735|gb|EES43921.1| type IV pilus secretin PilQ [Burkholderia mallei PRL-20]
          Length = 462

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 333 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 390

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+
Sbjct: 391 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 450

Query: 411 FIAATPFLV 419
            +  TP +V
Sbjct: 451 VVYITPTVV 459


>gi|42527064|ref|NP_972162.1| hypothetical protein TDE1556 [Treponema denticola ATCC 35405]
 gi|41817488|gb|AAS12073.1| conserved domain protein [Treponema denticola ATCC 35405]
          Length = 400

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 270 RTLAEPTLTAISGQSASF--TSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSP 325
           R LA+ TL  I+G+   F  T+  +++ KT+ S+      S+     G++L+    V   
Sbjct: 219 RVLADTTLNGITGEEVRFQNTNTFRYIDKTLDSNGKPLYGSMREITSGLLLNIKGNVSGD 278

Query: 326 GRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           G I + +  +VS+    GV +G +P    +   T V  PSG  I++ GLL+ +    ++ 
Sbjct: 279 GMITMEVNAQVSKQGSGGVTSGVLPPTSEKIVKTKVRTPSGKPIIIGGLLQVEQNSSEKK 338

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           IP L  IPI G  F++   +   TE+ I   P++
Sbjct: 339 IPGLGDIPIAGLAFKDINGSETVTEMVIYIVPYI 372


>gi|325265676|ref|ZP_08132365.1| type IV pilus secretin PilQ [Kingella denitrificans ATCC 33394]
 gi|324982807|gb|EGC18430.1| type IV pilus secretin PilQ [Kingella denitrificans ATCC 33394]
          Length = 705

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 2/161 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E     +T++ P +     + A    G Q  Y T   S G  + +  D  + L  T
Sbjct: 537 LSAMETDNLTKTISTPRVLTQDRKEAEIRQGTQIPY-TTRGSNGEVTTSFKDAILSLKVT 595

Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +    +I L I     EP    VN    P    R   T   +  GGT+V+ G+ ++ +
Sbjct: 596 PRITPDSKIILDITINKDEPDYTRVNVEGEPGITTRAVKTQAMIEDGGTLVVGGIYQEQM 655

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                 +P L  IP+LG LF++   +    E+    TP ++
Sbjct: 656 SNNISKVPFLGDIPVLGNLFKSRSRSHTRNELLFFITPRIM 696


>gi|254038486|ref|ZP_04872542.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
 gi|226838992|gb|EEH71015.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
          Length = 654

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604


>gi|152991627|ref|YP_001357348.1| type II secretion system protein D [Sulfurovum sp. NBC37-1]
 gi|151423488|dbj|BAF70991.1| type II secretion system protein D [Sulfurovum sp. NBC37-1]
          Length = 678

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 109/265 (41%), Gaps = 40/265 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITG---SSSG-------------------------- 225
           QV +K  I E+ +++ +Q+G ++ + G   +SSG                          
Sbjct: 337 QVYVKAKIVEIDKNMAEQVGMKYGMNGGTITSSGLFTLAGNMGASALQMSPALLGFLNTN 396

Query: 226 PSKSFAADFGGKFVSEGGD-FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
            +K++     G  + E    F        F+    L  LE+  A   L+EP++   + + 
Sbjct: 397 NTKTYTDPVTGSVIQENNPAFKFDSTDKAFALGAALDLLEKNGAAHLLSEPSVLCTNNKE 456

Query: 285 ASFTSGGQH--LYKTVSSSTGATSV----TTHDYGVVLHFTPTVLSPGRIGLRIQT--EV 336
           A    G     L +   S+T  ++V    +  D G+ L   P + S  ++ L ++T  E 
Sbjct: 457 AEIYVGQTRSILTQAQQSTTAISNVINNYSREDIGLTLKVKPRLSSNNQVTLEVETVLED 516

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
            +P       D P+   R   T   + +G  I+L GL+K    +    +P L  IP+LG 
Sbjct: 517 IDPS-SEQVEDRPTTTKRTVKTNAIVRNGEMIILGGLIKRAGGKNISKVPFLGDIPVLGE 575

Query: 397 -LFRNSRFNREETEIFIAATPFLVK 420
            LF ++     E  + I  TP++V+
Sbjct: 576 MLFTHTGDVEREQNVVIYLTPYIVR 600


>gi|153848715|ref|ZP_01993991.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
 gi|149744675|gb|EDM56143.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
          Length = 132

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 64/121 (52%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G+ +S+  ++   L +    + V + DP   D+VV     ++L GK +G  NV +    G
Sbjct: 11  GRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNELFLIGKKLGTTNVSVWDSRG 70

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +   ++ +  D+  L+  L +F+ D +I V    + VVL G+V + Q+   AV+++ET
Sbjct: 71  RLIEQFNVEVTHDLNTLKSKLFQFLPDESIEVHSAQEKVVLRGLVSSQQNMDIAVKIAET 130

Query: 167 F 167
           F
Sbjct: 131 F 131


>gi|296103142|ref|YP_003613288.1| general secretion pathway protein D [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057601|gb|ADF62339.1| general secretion pathway protein D [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 642

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 122/278 (43%), Gaps = 44/278 (15%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--G 236
           +S +KV++ L+I    QV ++  IAEV+      +G Q   TG   G        FG  G
Sbjct: 328 NSLEKVIDKLDIR-RPQVLVEAIIAEVQDGNGMDLGVQW--TGKHGG------VQFGSTG 378

Query: 237 KFVSEGGDFSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             +S+  + ++KG              +  +L AL  +     L+ P++  +  + ASF 
Sbjct: 379 LPISQVKNGTIKGASFTGLATGFFNGDYGALLTALSTSGKNDILSTPSVVTLDNKEASFN 438

Query: 289 SGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342
            G      + S +T       SV     G  L   P +     I L+I+ EVS  +    
Sbjct: 439 VGQDVPVLSGSQTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDASAT 498

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +A   P++  R  +  V + SG T+VL GL+++  +Q    +PLL  +P++G LF   R
Sbjct: 499 EDASLGPTFNTRTINNEVMVHSGQTVVLGGLMENVSKQNVSKVPLLGDLPLVGQLF---R 555

Query: 403 FNREETE-----IFIAATPFLVKPVAMRDLSRPDDHYS 435
           +  E+T      +FI  T        +RD    DD+YS
Sbjct: 556 YTSEDTSKRNLMVFIHTT-------VLRD----DDNYS 582


>gi|83647301|ref|YP_435736.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC
           2396]
 gi|83635344|gb|ABC31311.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC
           2396]
          Length = 647

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 116/253 (45%), Gaps = 29/253 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFV------------ 239
           QV ++  I E+   + +Q+G Q +   +TG S   + +   + G                
Sbjct: 345 QVLIEAAIVEISDGLSRQLGVQMAAGDLTGKSGPATVTNFTNVGISASAILAAIASNSTP 404

Query: 240 SEGGDFSVKGVLD---RFSFETVLHALERATAIRTLAEPTLTA--------ISGQSASFT 288
           S GGD +   + +   R  +  ++ AL  +     L+ P++          I GQ+  F 
Sbjct: 405 SIGGDIAAVAIGEAEGRKGWGALIQALGTSGQANLLSTPSIITMDNLQSEIIVGQNVPFR 464

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGD 347
           +G        +S+   T++   D G+ L  TP++     + L I+ E S       +A D
Sbjct: 465 TGQTGTGTDGTSNP-FTTIERQDVGLTLRVTPSISDGDLVRLEIEQESSSIAPSNESASD 523

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + + + R+  T+V   +  TIVL GL+ ++ +  +  +PLL  IP+LGALFR+++  +++
Sbjct: 524 IITNK-RQIKTSVLADNAETIVLGGLMSENYKLSEAKVPLLGDIPLLGALFRSTKREKDK 582

Query: 408 TEIFIAATPFLVK 420
             + +   P +++
Sbjct: 583 QNLLVFLRPTILR 595


>gi|187931580|ref|YP_001891564.1| type IV pili secretin component [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712489|gb|ACD30786.1| type IV pili secretin component [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 590

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 117/263 (44%), Gaps = 33/263 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224
           K+V+N ++I   DQV ++  I EV R    ++GF + +   S                  
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           GP+ +    F G        +++ G + R   E  + ALE  +    +A P L   + Q 
Sbjct: 391 GPTPTPVDTFVGTTAKLA--YTIAGGV-RLEME--VRALESESLAEEVASPHLVVANNQV 445

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A F   G+ +    ++++GA +V   +  + L  TP +   G I + I   V++  +G +
Sbjct: 446 A-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGAS 502

Query: 345 AGDMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            G  P         + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG L
Sbjct: 503 PGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYL 562

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F  ++   +++E+ I  TP +++
Sbjct: 563 FSYTKITDQDSELLIFITPKIIE 585


>gi|153870872|ref|ZP_02000179.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           PS]
 gi|152072664|gb|EDN69823.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           PS]
          Length = 698

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 2/207 (0%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           GF    T +  G  ++F         +        G +  +  +  L A++   +   ++
Sbjct: 491 GFSSDNTATGEGQGENFIVSLPAAIANPAAVGLAIGKIGSYLLQLELSAMQSEGSGEIIS 550

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            P +   + Q A  T G +  Y   +       V      + L  TP +    R+ + + 
Sbjct: 551 NPRIITGNQQEAIITQGTEIPYVQQAGVGSVAQVQFKQAVLELKVTPQITPDDRVNMELA 610

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            +   P  GVN G   S   R+  T V + +G T+VL G+ +         IP  + +P+
Sbjct: 611 VKKDSP--GVNIGGNLSIDKREVKTNVLVDNGETVVLGGVYERTRSNAINRIPFFADLPL 668

Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420
           +G LF+N   + +++E+ I  TP ++K
Sbjct: 669 IGELFKNRSKSDDKSELLIFVTPKILK 695


>gi|323934477|gb|EGB30885.1| general secretion pathway protein D [Escherichia coli E1520]
          Length = 654

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604


>gi|261365347|ref|ZP_05978230.1| type IV pilus biogenesis protein PilQ [Neisseria mucosa ATCC 25996]
 gi|288566287|gb|EFC87847.1| type IV pilus biogenesis protein PilQ [Neisseria mucosa ATCC 25996]
          Length = 711

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 2/164 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + A E     +T++ P +     + A+  SG +  Y+  SSS GATSV+     + L  T
Sbjct: 543 ISASEATGKSKTISNPRVLTQDRREATIESGTEIPYQEASSS-GATSVSFKKAVLGLTVT 601

Query: 320 PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P V   G++ + ++     P    V++      + +  +T   +  GGT+++ G+ ++D 
Sbjct: 602 PNVTPDGQVIMTVKITKDTPQDCTVDSLITKCIQTKNLNTQAMVEDGGTLIVGGIYEEDN 661

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
                 +PLL  +P++G LF++     E  E+ +  TP ++  V
Sbjct: 662 SDTINKVPLLGDLPVVGNLFKSRAKKEERRELLVFITPRIMDGV 705


>gi|153834019|ref|ZP_01986686.1| msha biogenesis protein mshl [Vibrio harveyi HY01]
 gi|148869663|gb|EDL68649.1| msha biogenesis protein mshl [Vibrio harveyi HY01]
          Length = 544

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 106/255 (41%), Gaps = 34/255 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------GKFVSEGGDF 245
           QV L+  I EV      Q G   S   +S G S S   D           G  +  GG  
Sbjct: 270 QVILEAKILEVTLSDGYQQGINWSNMSASIGNSGSIVVDRNPAKLPLDAIGTLL--GGQT 327

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG- 303
           +V       +F+ V++ +     +  L+ P +TA + Q +    G    + T +SS+ G 
Sbjct: 328 NV--TFSDGNFKAVMNFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGN 385

Query: 304 --------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------ 346
                      +T    G+ L  TP + + G + L +     EV E +  +N G      
Sbjct: 386 GENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQLNLGGDFQNI 445

Query: 347 DMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            +P  +  +R++D+ +    G  +V+ GL+K    +    +P L  +P LG LFRN    
Sbjct: 446 QLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNV 505

Query: 405 REETEIFIAATPFLV 419
            ++TE+ I   P +V
Sbjct: 506 TQKTELVILLKPTVV 520


>gi|254225450|ref|ZP_04919061.1| general secretion pathway protein D [Vibrio cholerae V51]
 gi|125622084|gb|EAZ50407.1| general secretion pathway protein D [Vibrio cholerae V51]
          Length = 675

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 21/160 (13%)

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPG 326
           +T +    ASF  G     + V   TG+T+ + +D           G+ L   P +    
Sbjct: 465 ITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGN 519

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + +  +P
Sbjct: 520 SVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVP 578

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           LL  IP+LG LFR++    E+  + +      +KP  +RD
Sbjct: 579 LLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIRD 613


>gi|221133689|ref|ZP_03559994.1| type IV pilus secretin PilQ [Glaciecola sp. HTCC2999]
          Length = 473

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 33/252 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS-----SGPSKSFAADFGGKFVSEGGD----- 244
           QV ++  +  VR +I  QIG +  ITG       SG S + A D     + +  D     
Sbjct: 226 QVLIESRMITVRDNIDDQIGIRWGITGQKGHLAVSG-SAAAANDIKAGIIPDISDRLNVN 284

Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                        +  ++D    +  L ALE       +A P +T ++ Q  ++   G  
Sbjct: 285 LPIVNSAGRLGVQIASLMDGTILDLELSALETENKGEIIASPRIT-VANQQEAYIEQGTE 343

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSY 351
           +    S++ G+TSV      + L   P +    RI   L I  +     +    G   + 
Sbjct: 344 IPYVQSTANGSTSVAFKKAVLSLKVIPQITPDDRIILDLVITQDTRGETVSTATGPAVAI 403

Query: 352 RVRKADTTVELPSGGTIVLAGLLK----DDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             ++  T V + +G TIVL G+ +    +DI +    +P+L  +P++G LF+N     ++
Sbjct: 404 DTQEIKTQVLVENGETIVLGGIFQKISTNDIAK----VPILGNVPLVGGLFKNKVSIEQK 459

Query: 408 TEIFIAATPFLV 419
            E+ I  TP ++
Sbjct: 460 RELLIFVTPKII 471


>gi|121586611|ref|ZP_01676396.1| general secretion pathway protein D [Vibrio cholerae 2740-80]
 gi|121726696|ref|ZP_01679921.1| general secretion pathway protein D [Vibrio cholerae V52]
 gi|147674158|ref|YP_001218221.1| general secretion pathway protein D [Vibrio cholerae O395]
 gi|153212585|ref|ZP_01948332.1| general secretion pathway protein D [Vibrio cholerae 1587]
 gi|153802934|ref|ZP_01957520.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
 gi|153817437|ref|ZP_01970104.1| general secretion pathway protein D [Vibrio cholerae NCTC 8457]
 gi|153821293|ref|ZP_01973960.1| general secretion pathway protein D [Vibrio cholerae B33]
 gi|153825504|ref|ZP_01978171.1| general secretion pathway protein D [Vibrio cholerae MZO-2]
 gi|153828338|ref|ZP_01981005.1| general secretion pathway protein D [Vibrio cholerae 623-39]
 gi|227082847|ref|YP_002811398.1| general secretion pathway protein D [Vibrio cholerae M66-2]
 gi|229507219|ref|ZP_04396724.1| general secretion pathway protein D [Vibrio cholerae BX 330286]
 gi|229509860|ref|ZP_04399341.1| general secretion pathway protein D [Vibrio cholerae B33]
 gi|229513661|ref|ZP_04403125.1| general secretion pathway protein D [Vibrio cholerae TMA 21]
 gi|229516981|ref|ZP_04406427.1| general secretion pathway protein D [Vibrio cholerae RC9]
 gi|229524711|ref|ZP_04414116.1| general secretion pathway protein D [Vibrio cholerae bv. albensis
           VL426]
 gi|229527341|ref|ZP_04416733.1| general secretion pathway protein D [Vibrio cholerae 12129(1)]
 gi|229606725|ref|YP_002877373.1| general secretion pathway protein D [Vibrio cholerae MJ-1236]
 gi|254285928|ref|ZP_04960890.1| general secretion pathway protein D [Vibrio cholerae AM-19226]
 gi|254851270|ref|ZP_05240620.1| general secretion pathway protein D [Vibrio cholerae MO10]
 gi|255744309|ref|ZP_05418261.1| general secretion pathway protein D [Vibrio cholera CIRS 101]
 gi|262158581|ref|ZP_06029696.1| general secretion pathway protein D [Vibrio cholerae INDRE 91/1]
 gi|262170026|ref|ZP_06037715.1| general secretion pathway protein D [Vibrio cholerae RC27]
 gi|298500452|ref|ZP_07010256.1| general secretion pathway protein D [Vibrio cholerae MAK 757]
 gi|11182423|sp|P45779|GSPD_VIBCH RecName: Full=General secretion pathway protein D; AltName:
           Full=Cholera toxin secretion protein epsD; Flags:
           Precursor
 gi|121549170|gb|EAX59203.1| general secretion pathway protein D [Vibrio cholerae 2740-80]
 gi|121630857|gb|EAX63239.1| general secretion pathway protein D [Vibrio cholerae V52]
 gi|124116456|gb|EAY35276.1| general secretion pathway protein D [Vibrio cholerae 1587]
 gi|124121547|gb|EAY40290.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
 gi|126512023|gb|EAZ74617.1| general secretion pathway protein D [Vibrio cholerae NCTC 8457]
 gi|126521225|gb|EAZ78448.1| general secretion pathway protein D [Vibrio cholerae B33]
 gi|146316041|gb|ABQ20580.1| general secretion pathway protein D [Vibrio cholerae O395]
 gi|148876168|gb|EDL74303.1| general secretion pathway protein D [Vibrio cholerae 623-39]
 gi|149740789|gb|EDM54880.1| general secretion pathway protein D [Vibrio cholerae MZO-2]
 gi|150424110|gb|EDN16049.1| general secretion pathway protein D [Vibrio cholerae AM-19226]
 gi|227010735|gb|ACP06947.1| general secretion pathway protein D [Vibrio cholerae M66-2]
 gi|227014619|gb|ACP10829.1| general secretion pathway protein D [Vibrio cholerae O395]
 gi|229334973|gb|EEO00458.1| general secretion pathway protein D [Vibrio cholerae 12129(1)]
 gi|229338292|gb|EEO03309.1| general secretion pathway protein D [Vibrio cholerae bv. albensis
           VL426]
 gi|229346044|gb|EEO11016.1| general secretion pathway protein D [Vibrio cholerae RC9]
 gi|229349538|gb|EEO14494.1| general secretion pathway protein D [Vibrio cholerae TMA 21]
 gi|229353334|gb|EEO18273.1| general secretion pathway protein D [Vibrio cholerae B33]
 gi|229354724|gb|EEO19645.1| general secretion pathway protein D [Vibrio cholerae BX 330286]
 gi|229369380|gb|ACQ59803.1| general secretion pathway protein D [Vibrio cholerae MJ-1236]
 gi|254846975|gb|EET25389.1| general secretion pathway protein D [Vibrio cholerae MO10]
 gi|255737834|gb|EET93227.1| general secretion pathway protein D [Vibrio cholera CIRS 101]
 gi|262021434|gb|EEY40146.1| general secretion pathway protein D [Vibrio cholerae RC27]
 gi|262029742|gb|EEY48391.1| general secretion pathway protein D [Vibrio cholerae INDRE 91/1]
 gi|297540621|gb|EFH76678.1| general secretion pathway protein D [Vibrio cholerae MAK 757]
 gi|327485201|gb|AEA79608.1| General secretion pathway protein D [Vibrio cholerae LMA3894-4]
          Length = 674

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 21/160 (13%)

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPG 326
           +T +    ASF  G     + V   TG+T+ + +D           G+ L   P +    
Sbjct: 464 ITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGN 518

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + +  +P
Sbjct: 519 SVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVP 577

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           LL  IP+LG LFR++    E+  + +      +KP  +RD
Sbjct: 578 LLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIRD 612


>gi|153947838|ref|YP_001402784.1| YscC/HrcC family type III secretion outer membrane protein
           [Yersinia pseudotuberculosis IP 31758]
 gi|170026130|ref|YP_001722635.1| YscC/HrcC family type III secretion outer membrane protein
           [Yersinia pseudotuberculosis YPIII]
 gi|186893670|ref|YP_001870782.1| YscC/HrcC family type III secretion outer membrane protein
           [Yersinia pseudotuberculosis PB1/+]
 gi|152959333|gb|ABS46794.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pseudotuberculosis IP 31758]
 gi|169752664|gb|ACA70182.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pseudotuberculosis YPIII]
 gi|186696696|gb|ACC87325.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 505

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 28/220 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ + VTI +V    + Q+G   S + S  G   SF + F  K  +EG  FS   + D  
Sbjct: 279 QIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA-KNNAEG--FSTV-IGDTG 334

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +F   L+AL++ +  R L++P++  ++   A          K            T   G 
Sbjct: 335 NFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKLQGEKVAKLESVTS--GS 392

Query: 315 VLHFTPTVLSPGRIGLRIQTE-VSEPVIGVNAGD------------MPSYRVRKADTTVE 361
           +L  TP +         I+TE V E ++ +N  D            +P  R     T   
Sbjct: 393 LLRVTPRM---------IETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQAT 443

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           L  G +++L G ++D   + +  IPLL  IP+LG LFR++
Sbjct: 444 LQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRST 483


>gi|329900875|ref|ZP_08272624.1| General secretion pathway protein D / Type II secretion
           outermembrane pore forming protein (PulD)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549348|gb|EGF33919.1| General secretion pathway protein D / Type II secretion
           outermembrane pore forming protein (PulD)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 696

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 116/274 (42%), Gaps = 38/274 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH-SITGSSS-----GPSKSF---------AADFGGKFV 239
           QV ++  I EV      + G Q   ++G+S+     G + +F         AA   G   
Sbjct: 369 QVYIESLIVEVSAKKAAEFGIQWLGLSGNSTSNYRVGAASTFSTDNIAGLAAASKAGTIP 428

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERA----TAIRTLAEPTLTA--------ISGQSASF 287
           + G   ++ GV  + +    L AL RA         L+ P L          I GQ+  F
Sbjct: 429 AVGAGLTL-GVFRQINGALGLGALARALESDDGTNILSMPNLITLDNEEARIIVGQNVPF 487

Query: 288 TSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
            +G    Y T +S  G+      +V   D G+ L   P +   G + + I  E S     
Sbjct: 488 ITG---QYTTQASGGGSGVNPFQTVERKDVGLQLRVRPQISEGGTVKMAIYQETSAVQSS 544

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            N   + + + R  DT V +  G  +VL GL++D ++   E +P L  +P++G LF+  +
Sbjct: 545 TNTAGIITSK-RSIDTNVLVDDGQIVVLGGLIEDTLEDGNERVPGLGDLPVVGNLFKYQK 603

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
            NR +T + +   P +++    + LS   D Y +
Sbjct: 604 RNRTKTNLMVFLRPTIIRS-NEQSLSLSGDRYDL 636


>gi|262190137|ref|ZP_06048422.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio cholerae CT 5369-93]
 gi|262033978|gb|EEY52433.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio cholerae CT 5369-93]
          Length = 675

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 21/160 (13%)

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPG 326
           +T +    ASF  G     + V   TG+T+ + +D           G+ L   P +    
Sbjct: 465 ITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGN 519

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + +  +P
Sbjct: 520 SVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVP 578

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           LL  IP+LG LFR++    E+  + +      +KP  +RD
Sbjct: 579 LLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIRD 613


>gi|320180160|gb|EFW55099.1| General secretion pathway protein D [Shigella boydii ATCC 9905]
          Length = 654

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604


>gi|282856386|ref|ZP_06265665.1| putative type IV pilus biogenesis protein PilQ [Pyramidobacter
           piscolens W5455]
 gi|282585757|gb|EFB91046.1| putative type IV pilus biogenesis protein PilQ [Pyramidobacter
           piscolens W5455]
          Length = 566

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 109/274 (39%), Gaps = 33/274 (12%)

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI---------------------- 213
           +     ++ + LL+  G  QV LK  I EV  D   Q+                      
Sbjct: 289 FQQEKVRRTLRLLDAPGR-QVMLKARIIEVNDDASDQLETALNAVYDWWWGSYQNGALSA 347

Query: 214 GFQHS--ITGSSSGPSKSF--AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           GF  S    G++ G   +   +A+  G+  S  G   + G   R   +  L  L      
Sbjct: 348 GFAQSGRKPGTAEGALGNLDTSANLPGEIGS--GIVQLAGTATRM-LDFRLRTLVEQKKA 404

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           R LA+PT+T + G+ A+     +  Y +        +    + G  L  TP +   G I 
Sbjct: 405 RVLADPTVTVLDGEKATVKLVEKLKYVSRRDDAQNPTYDDEEVGPKLEVTPRIGRSGMIT 464

Query: 330 LRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           + +     E +  +  G    +P    R  +T + +  G   V+ GL K+   + +  +P
Sbjct: 465 VSVSLATGEVIQWIRGGQGEQIPQTNSRTVETKIRVRDGEPFVIGGLFKESRSRTRASVP 524

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +LS IP++G LF+     +  +++ +   P++++
Sbjct: 525 ILSSIPLIGELFKAKLDKKTRSQVVMILIPYILE 558


>gi|609625|gb|AAA58785.1| EpsD [Vibrio cholerae]
          Length = 674

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 21/160 (13%)

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPG 326
           +T +    ASF  G     + V   TG+T+ + +D           G+ L   P +    
Sbjct: 464 ITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGN 518

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + +  +P
Sbjct: 519 SVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVP 577

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           LL  IP+LG LFR++    E+  + +      +KP  +RD
Sbjct: 578 LLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIRD 612


>gi|217424883|ref|ZP_03456380.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 576]
 gi|217392339|gb|EEC32364.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 576]
          Length = 459

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 330 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 387

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+
Sbjct: 388 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 447

Query: 411 FIAATPFLV 419
            +  TP +V
Sbjct: 448 VVYITPTVV 456


>gi|194439979|ref|ZP_03072038.1| general secretion pathway protein D [Escherichia coli 101-1]
 gi|307140008|ref|ZP_07499364.1| general secretory pathway component, cryptic [Escherichia coli
           H736]
 gi|331644021|ref|ZP_08345150.1| general secretion pathway protein D [Escherichia coli H736]
 gi|606259|gb|AAA58122.1| ORF_o654 [Escherichia coli str. K-12 substr. MG1655]
 gi|194421087|gb|EDX37115.1| general secretion pathway protein D [Escherichia coli 101-1]
 gi|315137900|dbj|BAJ45059.1| general secretion pathway protein D [Escherichia coli DH1]
 gi|323959524|gb|EGB55177.1| general secretion pathway protein D [Escherichia coli H489]
 gi|323970129|gb|EGB65403.1| general secretion pathway protein D [Escherichia coli TA007]
 gi|331036315|gb|EGI08541.1| general secretion pathway protein D [Escherichia coli H736]
 gi|332345271|gb|AEE58605.1| general secretion pathway protein GspD [Escherichia coli UMNK88]
          Length = 654

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604


>gi|28199566|ref|NP_779880.1| fimbrial assembly protein [Xylella fastidiosa Temecula1]
 gi|182682302|ref|YP_001830462.1| type IV pilus secretin PilQ [Xylella fastidiosa M23]
 gi|28057681|gb|AAO29529.1| fimbrial assembly protein [Xylella fastidiosa Temecula1]
 gi|182632412|gb|ACB93188.1| type IV pilus secretin PilQ [Xylella fastidiosa M23]
          Length = 636

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 97/212 (45%), Gaps = 14/212 (6%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           GSS+  ++    D GG   +         +++ G   +F+ +  L AL++ +    ++ P
Sbjct: 418 GSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLG--PKFNLDLELSALQQESRGEVISNP 475

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLR 331
            +   + +      G +  Y T++        T +    +  + L  TPT+ +  R+ L 
Sbjct: 476 RIVTANQREGYIKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLN 535

Query: 332 I---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           +   + E+ + +   N G +P+   R+ +T V +  G T+V+ G+ +   +     +P L
Sbjct: 536 MTVKKDEIDQMITIANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFL 595

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +P LG LF+    ++++ E+ I  TP +++
Sbjct: 596 GDVPFLGNLFKKRGKDKQKAELLIFVTPKVLR 627


>gi|331684967|ref|ZP_08385553.1| general secretion pathway protein D [Escherichia coli H299]
 gi|331077338|gb|EGI48550.1| general secretion pathway protein D [Escherichia coli H299]
          Length = 654

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604


>gi|188997001|ref|YP_001931252.1| type II and III secretion system protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932068|gb|ACD66698.1| type II and III secretion system protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 602

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 24/247 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSKS---FAADFGGKF 238
           Q+ ++  I +V    LK +G Q               ITG  S    S   +A DF    
Sbjct: 356 QIAIEARIVQVSTSNLKDLGIQWGGSATNIDNNNTKIITGGGSTSVISGGRYAVDFPSSS 415

Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
            +  G F++    G L  F  +  L AL+     + L++P +  I G++A  + G +  Y
Sbjct: 416 ATFPGGFAIGFVFGGLQNF-LDVRLSALQSIGRSKILSKPQIVTIDGETAEISQGYEVPY 474

Query: 296 KTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            T  ++ G T  SV+     + L+ TP   + G I + I      P         P  + 
Sbjct: 475 TTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDIIITQDIPDFKNLILGNPPIQT 534

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKE-GIPLLSKIPILGALFRNSRFNREETEIFI 412
           +   + V    G  I + G+L +  + LK+ G+P L  IPILG LF+ +    +  E+ I
Sbjct: 535 KTVTSKVVAKDGSVIAIGGIL-EKTEDLKDSGVPGLMNIPILGYLFKENYKQEKTNELLI 593

Query: 413 AATPFLV 419
             +P +V
Sbjct: 594 FLSPRIV 600


>gi|148270748|ref|YP_001245208.1| type II and III secretion system protein [Thermotoga petrophila
           RKU-1]
 gi|147736292|gb|ABQ47632.1| type II and III secretion system protein [Thermotoga petrophila
           RKU-1]
          Length = 387

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 107/227 (47%), Gaps = 18/227 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV + V + E+ RD   ++G        S G  + F  ++        G  +V+   D F
Sbjct: 166 QVKISVIVTEISRDYSNELGLNS--LDYSFGSGQEFNENWTATLGLVTGILNVQT--DVF 221

Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-VTTHDY 312
                 L  LE     +  A+P +   SG+ AS   G + +   +  + GA S + + D 
Sbjct: 222 GQILAKLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQV--VLLEAEGAVSRIESIDV 279

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKAD--TTVELPSGGTIV 369
           GV +   P V+    + L +  +VS       AG+ + ++ V++ +  TT+ L +G T+V
Sbjct: 280 GVSIEIQPRVMDKEELELTLSPKVSH-----FAGEKLGTFAVKQNELSTTLFLKNGQTVV 334

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAA 414
           ++G   +D  Q   G+P+L+KIP++  LF     + +++E  IFI A
Sbjct: 335 ISGATIEDSAQTGSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKA 381


>gi|94266705|ref|ZP_01290378.1| type II and III secretion system protein [delta proteobacterium
           MLMS-1]
 gi|93452646|gb|EAT03209.1| type II and III secretion system protein [delta proteobacterium
           MLMS-1]
          Length = 577

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 16/180 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--- 312
           FE +L A+E       L+ P ++ ++GQ A    G    Y   +SST      TH+    
Sbjct: 398 FELLLDAIETQGETNVLSNPRISIMNGQPALINVGETVRYIAEASSTIQDQGVTHNIITG 457

Query: 313 ----GVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD-----MPSYRVRKADTT 359
               G+ +   P ++    I L +    ++    P+     GD     +P   +R+  T 
Sbjct: 458 TVMSGLSMSVLPIIVDDNEIILSMTPMTTQLAPGPIPREKFGDNMLVQLPQINIREMQTM 517

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V + +G T+++ GL+ +      + +PLL  IP LG LFR+   ++E+ E+ I   P ++
Sbjct: 518 VRVANGDTLMIGGLIDEYETTESKRVPLLGDIPGLGKLFRHDTRSKEKKELVIMLRPRIL 577


>gi|332977545|gb|EGK14316.1| type IV pilus biogenesis protein PilQ [Psychrobacter sp.
           1501(2011)]
          Length = 608

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A++       ++ P +  +  Q+A  +SG +  Y++  S  G T+    +  + L  T
Sbjct: 447 LSAMQAEGRGEVISTPKILTLDKQTAKVSSGTKIPYQS-ESEGGGTTTQFEEALLSLEVT 505

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G I L++  E   P   V++G +      +  T V +  G TIVL G+ ++ I 
Sbjct: 506 PNITPEGEISLQLNIENGRPN-PVSSG-VILIDTDRLSTHVTVADGQTIVLGGIYRNQIF 563

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              E +P    +P+LG LF+      ++ E+ I  TP L++
Sbjct: 564 NNVEKVPFFGDLPLLGRLFKKDLRRNDKQELLIFVTPTLIQ 604


>gi|331674826|ref|ZP_08375583.1| general secretion pathway protein D [Escherichia coli TA280]
 gi|331067735|gb|EGI39133.1| general secretion pathway protein D [Escherichia coli TA280]
          Length = 654

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604


>gi|89110685|ref|AP_004465.1| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. W3110]
 gi|90111569|ref|NP_417784.4| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. MG1655]
 gi|170082844|ref|YP_001732164.1| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238902416|ref|YP_002928212.1| general secretory pathway component, cryptic [Escherichia coli
           BW2952]
 gi|256025947|ref|ZP_05439812.1| general secretory pathway component, cryptic [Escherichia sp.
           4_1_40B]
 gi|300932218|ref|ZP_07147497.1| general secretion pathway protein D [Escherichia coli MS 187-1]
 gi|300946547|ref|ZP_07160812.1| general secretion pathway protein D [Escherichia coli MS 116-1]
 gi|300954740|ref|ZP_07167173.1| general secretion pathway protein D [Escherichia coli MS 175-1]
 gi|301643855|ref|ZP_07243886.1| general secretion pathway protein D [Escherichia coli MS 146-1]
 gi|14917006|sp|P45758|GSPD_ECOLI RecName: Full=Probable general secretion pathway protein D; Flags:
           Precursor
 gi|85676716|dbj|BAE77966.1| general secretory pathway component, cryptic [Escherichia coli str.
           K12 substr. W3110]
 gi|87082242|gb|AAC76350.2| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169890679|gb|ACB04386.1| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238861291|gb|ACR63289.1| general secretory pathway component, cryptic [Escherichia coli
           BW2952]
 gi|260447656|gb|ACX38078.1| general secretion pathway protein D [Escherichia coli DH1]
 gi|300318291|gb|EFJ68075.1| general secretion pathway protein D [Escherichia coli MS 175-1]
 gi|300453793|gb|EFK17413.1| general secretion pathway protein D [Escherichia coli MS 116-1]
 gi|300460042|gb|EFK23535.1| general secretion pathway protein D [Escherichia coli MS 187-1]
 gi|301077758|gb|EFK92564.1| general secretion pathway protein D [Escherichia coli MS 146-1]
 gi|309703737|emb|CBJ03078.1| probable general secretion pathway protein D precursor [Escherichia
           coli ETEC H10407]
 gi|315618942|gb|EFU99525.1| general secretion pathway protein D [Escherichia coli 3431]
          Length = 650

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 560 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600


>gi|145300643|ref|YP_001143484.1| general secretion pathway protein D [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|1170051|sp|P45778|GSPD_AERSA RecName: Full=General secretion pathway protein D; Flags: Precursor
 gi|516351|emb|CAA56668.1| ExeD [Aeromonas salmonicida]
 gi|142853415|gb|ABO91736.1| general secretion pathway protein D [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 678

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 31/189 (16%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--------------HLYKTVSS 300
           ++  ++ AL  +T    L+ P++  +  + ASF  G +               ++ T+  
Sbjct: 428 NWAALVTALSTSTKSDILSTPSIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIER 487

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DM-PSYRVRKAD 357
            T  T +T          TP +     + L I+ EVS        G  D+ P++  R   
Sbjct: 488 KTVGTKLT---------VTPQINEGDSVLLNIEQEVSSVAQKQATGTADLGPTFDTRTIK 538

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             V + SG T+VL GL+ +  Q+    +PLL  IP+LG LFR++     +  + +     
Sbjct: 539 NAVLVKSGETVVLGGLMDEQTQEKVSKVPLLGDIPVLGYLFRSTNNTTSKRNLMV----- 593

Query: 418 LVKPVAMRD 426
            ++P  +RD
Sbjct: 594 FIRPTILRD 602


>gi|26249920|ref|NP_755960.1| general secretion pathway protein D [Escherichia coli CFT073]
 gi|91212762|ref|YP_542748.1| general secretion pathway protein D [Escherichia coli UTI89]
 gi|117625603|ref|YP_858926.1| putative general secretion pathway protein D precursor [Escherichia
           coli APEC O1]
 gi|227883456|ref|ZP_04001261.1| general secretion pathway protein D precursor [Escherichia coli
           83972]
 gi|300979896|ref|ZP_07174772.1| general secretion pathway protein D [Escherichia coli MS 45-1]
 gi|301046096|ref|ZP_07193274.1| general secretion pathway protein D [Escherichia coli MS 185-1]
 gi|26110348|gb|AAN82534.1|AE016767_294 Probable general secretion pathway protein D precursor [Escherichia
           coli CFT073]
 gi|91074336|gb|ABE09217.1| probable general secretion pathway protein D [Escherichia coli
           UTI89]
 gi|115514727|gb|ABJ02802.1| putative general secretion pathway protein D precursor [Escherichia
           coli APEC O1]
 gi|227839600|gb|EEJ50066.1| general secretion pathway protein D precursor [Escherichia coli
           83972]
 gi|294492078|gb|ADE90834.1| general secretion pathway protein D [Escherichia coli IHE3034]
 gi|300301922|gb|EFJ58307.1| general secretion pathway protein D [Escherichia coli MS 185-1]
 gi|300409407|gb|EFJ92945.1| general secretion pathway protein D [Escherichia coli MS 45-1]
 gi|307628360|gb|ADN72664.1| general secretory pathway component, cryptic [Escherichia coli
           UM146]
 gi|315284600|gb|EFU44045.1| general secretion pathway protein D [Escherichia coli MS 110-3]
 gi|315292358|gb|EFU51710.1| general secretion pathway protein D [Escherichia coli MS 153-1]
 gi|323950239|gb|EGB46121.1| general secretion pathway protein D [Escherichia coli H252]
 gi|323954552|gb|EGB50335.1| general secretion pathway protein D [Escherichia coli H263]
          Length = 654

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604


>gi|157162799|ref|YP_001460117.1| general secretion pathway protein D [Escherichia coli HS]
 gi|157068479|gb|ABV07734.1| general secretion pathway protein D [Escherichia coli HS]
          Length = 654

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604


>gi|306816332|ref|ZP_07450470.1| general secretory pathway component, cryptic [Escherichia coli
           NC101]
 gi|305850728|gb|EFM51185.1| general secretory pathway component, cryptic [Escherichia coli
           NC101]
          Length = 654

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604


>gi|293412744|ref|ZP_06655412.1| general secretion pathway protein D [Escherichia coli B354]
 gi|291468391|gb|EFF10884.1| general secretion pathway protein D [Escherichia coli B354]
          Length = 650

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 560 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600


>gi|110643564|ref|YP_671294.1| general secretion pathway protein D precursor [Escherichia coli
           536]
 gi|191171536|ref|ZP_03033084.1| general secretion pathway protein D [Escherichia coli F11]
 gi|300974004|ref|ZP_07172411.1| general secretion pathway protein D [Escherichia coli MS 200-1]
 gi|331649123|ref|ZP_08350209.1| general secretion pathway protein D [Escherichia coli M605]
 gi|331659615|ref|ZP_08360553.1| general secretion pathway protein D [Escherichia coli TA206]
 gi|110345156|gb|ABG71393.1| probable general secretion pathway protein D precursor [Escherichia
           coli 536]
 gi|190908163|gb|EDV67754.1| general secretion pathway protein D [Escherichia coli F11]
 gi|281180360|dbj|BAI56690.1| general secretion pathway protein D [Escherichia coli SE15]
 gi|300309014|gb|EFJ63534.1| general secretion pathway protein D [Escherichia coli MS 200-1]
 gi|312947876|gb|ADR28703.1| general secretion pathway protein D precursor [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315298623|gb|EFU57878.1| general secretion pathway protein D [Escherichia coli MS 16-3]
 gi|324009016|gb|EGB78235.1| general secretion pathway protein D [Escherichia coli MS 57-2]
 gi|324014941|gb|EGB84160.1| general secretion pathway protein D [Escherichia coli MS 60-1]
 gi|330909367|gb|EGH37881.1| general secretion pathway protein D [Escherichia coli AA86]
 gi|331041621|gb|EGI13765.1| general secretion pathway protein D [Escherichia coli M605]
 gi|331052830|gb|EGI24863.1| general secretion pathway protein D [Escherichia coli TA206]
          Length = 654

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604


>gi|323939252|gb|EGB35464.1| general secretion pathway protein D [Escherichia coli E482]
          Length = 504

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 243 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 302

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 303 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 353

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 354 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 413

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 414 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 454


>gi|311280237|ref|YP_003942468.1| general secretion pathway protein D [Enterobacter cloacae SCF1]
 gi|308749432|gb|ADO49184.1| general secretion pathway protein D [Enterobacter cloacae SCF1]
          Length = 647

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 37/197 (18%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSST 302
           F  ++ AL        L+ P++  +  + ASF             T+ G +++ TV   T
Sbjct: 406 FGALMTALSTDGKNDILSTPSVVTLDNKEASFNVGQDVPVLSGSQTTSGDNVFNTVERKT 465

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADT 358
                     G  L   P +     I L+I+ EVS   +  NA +     P++  R  + 
Sbjct: 466 ---------VGTKLKIVPQINDGDMIHLKIEQEVSS--VDSNATEDASLGPTFNTRTINN 514

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V + SG T+VL GL++ + +Q    +PLL  IP++G LFR +  +  +  + +      
Sbjct: 515 EVMVHSGQTVVLGGLIESNTKQSVSKVPLLGDIPLVGQLFRYTSQDTSKRNLMV-----F 569

Query: 419 VKPVAMRDLSRPDDHYS 435
           +    +RD    DD YS
Sbjct: 570 IHTTVLRD----DDSYS 582


>gi|300918298|ref|ZP_07134902.1| general secretion pathway protein D [Escherichia coli MS 115-1]
 gi|300414559|gb|EFJ97869.1| general secretion pathway protein D [Escherichia coli MS 115-1]
          Length = 650

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 560 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600


>gi|284432099|gb|ADB84857.1| PilQ [Bdellovibrio sp. JSS]
          Length = 724

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 106/239 (44%), Gaps = 14/239 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGP---SKSFAADFGGKFVSEGGD 244
           QV+++  I E +    + IG   S TG       ++ GP   + SF  +      S   +
Sbjct: 471 QVSIEGKIVEAKESFTRNIGVNWSATGAPIKLGSTARGPVNMNPSFNVNQSAAGSSGALN 530

Query: 245 FSVK-GVLDRFSFETVLHAL-ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           F++  G LD F   +   AL E    ++ ++ P +  +S + A      +   + V+ + 
Sbjct: 531 FNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQTTEVPVRQVTQNG 590

Query: 303 GATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
            AT  T       + L  TP V + G + +++  +     +        +   R+A+T V
Sbjct: 591 TATQETFQFKPLTLKLEVTPQVTADGSVIMKVNRQFRGADVSSAGQGAFAVNSREANTRV 650

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +G T V+ G+ + D    + G+P   ++P +  LF+    ++E++E+ I  TP ++
Sbjct: 651 LVKNGQTAVIGGIYQSDATDGEVGVPWFRELPYVSYLFKTKNISKEKSELLIFLTPXIM 709


>gi|313667332|ref|YP_004049733.1| type II and III secretion system protein [Oceanithermus profundus
           DSM 14977]
 gi|313153963|gb|ADR37813.1| type II and III secretion system protein [Oceanithermus profundus
           DSM 14977]
          Length = 804

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 98/239 (41%), Gaps = 25/239 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           DQV  +V I EV R    ++G            +  FA       ++ G D     +   
Sbjct: 522 DQVVSRVWIQEVDRSAANELGINWQYA------TGKFAISVTEGVLTGGYDSGASAL--- 572

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--------TGAT 305
            +    +  LE+    R L +     ++ +  +  SGG+ L      +        TG T
Sbjct: 573 SALAQSIRLLEKTGRSRRLLDANTLTLNAEPTTLLSGGKLLLPKQGDTGNVDGQEGTGGT 632

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-SEPVIGVNAGDM---PSYRVRKADTTVE 361
                +YG+ L  TP     G I L I T V S P  G   G +    SY    A++ + 
Sbjct: 633 GYEEFNYGLNLELTPYTSPDGTITLDIATTVGSLPQSGPTPGSVLIPQSY----AESRIR 688

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  G  ++L G++ ++ +    G+P+L  IP++GALFR +   + E  + I     ++K
Sbjct: 689 IKDGQAVILGGVISNEDRNDVSGVPILKDIPVIGALFRTTERVQSERILLIIVQSHILK 747


>gi|218691610|ref|YP_002399822.1| general secretory pathway component, cryptic [Escherichia coli
           ED1a]
 gi|218429174|emb|CAR10129.2| general secretory pathway component, cryptic [Escherichia coli
           ED1a]
 gi|222035034|emb|CAP77777.1| general secretion pathway protein D [Escherichia coli LF82]
          Length = 650

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 560 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600


>gi|149189158|ref|ZP_01867445.1| fimbrial assembly protein [Vibrio shilonii AK1]
 gi|148836912|gb|EDL53862.1| fimbrial assembly protein [Vibrio shilonii AK1]
          Length = 550

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 5/163 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + +SA    G +  Y   S+S+GAT+V      + L  T
Sbjct: 388 LSALQSESKAEIISSPRLITTNKKSAYIEQGTEIPYLK-STSSGATAVEFKKAVLSLTVT 446

Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +    R+ L +   Q  V E V+    G+  +   ++  T V +  G T+VL G+ + 
Sbjct: 447 PQITPDNRLILDLDVTQDRVGE-VLKTLEGETVAIDTQRIGTQVLVNDGETVVLGGIFQH 505

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +    + +P+L  IP LGALFR +  N  + E+ I  TP ++
Sbjct: 506 AMTSKVDKVPVLGDIPGLGALFRRTYENIGKNELLIFVTPKII 548


>gi|149189065|ref|ZP_01867353.1| MSHA biogenesis protein MshL [Vibrio shilonii AK1]
 gi|148837028|gb|EDL53977.1| MSHA biogenesis protein MshL [Vibrio shilonii AK1]
          Length = 538

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 19/183 (10%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA---------T 305
           FE VL  +     +  L+ P +TA + Q +    G    + T +S+  G+          
Sbjct: 333 FEAVLSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTDISTVIGSGENANVAPQV 392

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNA-GD-----MPSYRVRKA 356
            +T    G+ L  TP +   G + L +     EV E    +   GD     +    +R++
Sbjct: 393 ELTPFFSGISLDVTPQIDEKGNVLLHVHPAVIEVQEEKKEIEVLGDSIIVPLAKSSIRES 452

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           D+ +    G  +V+ GL+K    ++   +P L  IP LG LFRN++   E+TE+ I   P
Sbjct: 453 DSVIRAADGDVVVIGGLMKSATTEMVSKVPYLGDIPALGHLFRNTQNVTEKTELVILLRP 512

Query: 417 FLV 419
            +V
Sbjct: 513 TVV 515


>gi|170018439|ref|YP_001723393.1| general secretion pathway protein D [Escherichia coli ATCC 8739]
 gi|188495544|ref|ZP_03002814.1| general secretion pathway protein D [Escherichia coli 53638]
 gi|169753367|gb|ACA76066.1| general secretion pathway protein D [Escherichia coli ATCC 8739]
 gi|188490743|gb|EDU65846.1| general secretion pathway protein D [Escherichia coli 53638]
          Length = 654

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604


>gi|15640429|ref|NP_230056.1| MSHA biogenesis protein MshL [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587598|ref|ZP_01677363.1| MSHA biogenesis protein MshL [Vibrio cholerae 2740-80]
 gi|121727263|ref|ZP_01680422.1| MSHA biogenesis protein MshL [Vibrio cholerae V52]
 gi|147674773|ref|YP_001218670.1| MSHA biogenesis protein MshL [Vibrio cholerae O395]
 gi|153802215|ref|ZP_01956801.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-3]
 gi|153818263|ref|ZP_01970930.1| MSHA biogenesis protein MshL [Vibrio cholerae NCTC 8457]
 gi|153822274|ref|ZP_01974941.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
 gi|227080613|ref|YP_002809164.1| MSHA biogenesis protein MshL [Vibrio cholerae M66-2]
 gi|229507042|ref|ZP_04396548.1| MSHA biogenesis protein MshL [Vibrio cholerae BX 330286]
 gi|229508803|ref|ZP_04398295.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
 gi|229519791|ref|ZP_04409234.1| MSHA biogenesis protein MshL [Vibrio cholerae RC9]
 gi|229606316|ref|YP_002876964.1| MSHA biogenesis protein MshL [Vibrio cholerae MJ-1236]
 gi|254226017|ref|ZP_04919617.1| MSHA biogenesis protein MshL [Vibrio cholerae V51]
 gi|254850634|ref|ZP_05239984.1| MSHA biogenesis protein MshL [Vibrio cholerae MO10]
 gi|255743787|ref|ZP_05417744.1| MSHA biogenesis protein MshL [Vibrio cholera CIRS 101]
 gi|262153600|ref|ZP_06028728.1| MSHA biogenesis protein MshL [Vibrio cholerae INDRE 91/1]
 gi|262167634|ref|ZP_06035338.1| MSHA biogenesis protein MshL [Vibrio cholerae RC27]
 gi|298501065|ref|ZP_07010866.1| MSHA biogenesis protein MshL [Vibrio cholerae MAK 757]
 gi|9654823|gb|AAF93575.1| MSHA biogenesis protein MshL [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548171|gb|EAX58243.1| MSHA biogenesis protein MshL [Vibrio cholerae 2740-80]
 gi|121630382|gb|EAX62777.1| MSHA biogenesis protein MshL [Vibrio cholerae V52]
 gi|124122239|gb|EAY40982.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-3]
 gi|125621473|gb|EAZ49807.1| MSHA biogenesis protein MshL [Vibrio cholerae V51]
 gi|126511222|gb|EAZ73816.1| MSHA biogenesis protein MshL [Vibrio cholerae NCTC 8457]
 gi|126520230|gb|EAZ77453.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
 gi|146316656|gb|ABQ21195.1| MSHA biogenesis protein MshL [Vibrio cholerae O395]
 gi|227008501|gb|ACP04713.1| MSHA biogenesis protein MshL [Vibrio cholerae M66-2]
 gi|227012257|gb|ACP08467.1| MSHA biogenesis protein MshL [Vibrio cholerae O395]
 gi|229344480|gb|EEO09455.1| MSHA biogenesis protein MshL [Vibrio cholerae RC9]
 gi|229354206|gb|EEO19137.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
 gi|229355787|gb|EEO20707.1| MSHA biogenesis protein MshL [Vibrio cholerae BX 330286]
 gi|229368971|gb|ACQ59394.1| MSHA biogenesis protein MshL [Vibrio cholerae MJ-1236]
 gi|254846339|gb|EET24753.1| MSHA biogenesis protein MshL [Vibrio cholerae MO10]
 gi|255738536|gb|EET93924.1| MSHA biogenesis protein MshL [Vibrio cholera CIRS 101]
 gi|262023970|gb|EEY42667.1| MSHA biogenesis protein MshL [Vibrio cholerae RC27]
 gi|262030627|gb|EEY49263.1| MSHA biogenesis protein MshL [Vibrio cholerae INDRE 91/1]
 gi|297540313|gb|EFH76373.1| MSHA biogenesis protein MshL [Vibrio cholerae MAK 757]
          Length = 559

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 106/261 (40%), Gaps = 38/261 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-----SKSFAADFGGKFVSE-------- 241
           QV L+  I EV      Q G   S   SS+G      S S   D  G  ++         
Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPGLDAI 336

Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
               GG  +V  V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y T
Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394

Query: 298 VSSS---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340
             SS   TG  +  + D        G+ L  TP +   G + L +   V E        +
Sbjct: 395 DLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454

Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 ++P  R  +R++D+ +    G  +V+ GL+K +       +P L  +P LG LF
Sbjct: 455 YRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RN+    ++TE+ I   P +V
Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535


>gi|153802182|ref|ZP_01956768.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
 gi|124122256|gb|EAY40999.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
          Length = 404

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 21/160 (13%)

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPG 326
           +T +    ASF  G     + V   TG+T+ + +D           G+ L   P +    
Sbjct: 194 ITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGN 248

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + +  +P
Sbjct: 249 SVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVP 307

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           LL  IP+LG LFR++    E+  + +      +KP  +RD
Sbjct: 308 LLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIRD 342


>gi|301021125|ref|ZP_07185165.1| general secretion pathway protein D [Escherichia coli MS 196-1]
 gi|299881655|gb|EFI89866.1| general secretion pathway protein D [Escherichia coli MS 196-1]
          Length = 654

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 393 AAQGVADYKKNGGLTSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604


>gi|254163253|ref|YP_003046361.1| general secretory pathway component, cryptic [Escherichia coli B
           str. REL606]
 gi|253975154|gb|ACT40825.1| general secretory pathway component, cryptic [Escherichia coli B
           str. REL606]
          Length = 650

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 560 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600


>gi|157146468|ref|YP_001453787.1| hypothetical protein CKO_02228 [Citrobacter koseri ATCC BAA-895]
 gi|157083673|gb|ABV13351.1| hypothetical protein CKO_02228 [Citrobacter koseri ATCC BAA-895]
          Length = 640

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 124/294 (42%), Gaps = 64/294 (21%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--G 236
           +S +KV++ L+I    QV ++  IAEV+      +G Q +        SK     FG  G
Sbjct: 328 NSLEKVIDKLDIR-RPQVLVEAIIAEVQDGAGTDLGVQWT--------SKHGGVQFGATG 378

Query: 237 KFVSEGGDFSVKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQSAS 286
             + +  + ++KGV   F+          F  ++ AL        L+ P++  +  + AS
Sbjct: 379 LPIGQVKNGTIKGV--NFTGMATGFFNGDFGALMTALSTNGKNDILSTPSVVTLDNKEAS 436

Query: 287 F-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           F             T+ G +++ TV   T          G  L   P +     I ++I+
Sbjct: 437 FNVGQDVPVLSGSQTTTGDNVFNTVERKT---------VGTKLKILPQINDGDMIHMKIE 487

Query: 334 TEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            EVS     V+A         P++  R  +  V + SG T+VL GL+++  +Q    +PL
Sbjct: 488 QEVSS----VDASSTEDSSLGPTFNTRTINNEVMVHSGQTVVLGGLIENVTKQNVSKVPL 543

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           L  IP++G LFR +  +  +  + +      +    +RD    DD+YS     K
Sbjct: 544 LGDIPLVGQLFRYTSQDTTKRNLMV-----FIHTTVLRD----DDNYSAASKEK 588


>gi|327483259|gb|AEA77666.1| MSHA biogenesis protein MshL [Vibrio cholerae LMA3894-4]
          Length = 559

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 106/261 (40%), Gaps = 38/261 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-----SKSFAADFGGKFVSE-------- 241
           QV L+  I EV      Q G   S   SS+G      S S   D  G  ++         
Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPGLDAI 336

Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
               GG  +V  V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y T
Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394

Query: 298 VSSS---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340
             SS   TG  +  + D        G+ L  TP +   G + L +   V E        +
Sbjct: 395 DLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454

Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 ++P  R  +R++D+ +    G  +V+ GL+K +       +P L  +P LG LF
Sbjct: 455 YRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RN+    ++TE+ I   P +V
Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535


>gi|134302144|ref|YP_001122113.1| type IV pilus secretin/type II and III secretion system protein
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|134049921|gb|ABO46992.1| type IV pilus secretin/type II and III secretion system protein
           [Francisella tularensis subsp. tularensis WY96-3418]
          Length = 590

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 117/263 (44%), Gaps = 33/263 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224
           K+V+N ++I   DQV ++  I EV R    ++GF + +   S                  
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           GP+ +    F G        +++ G + R   E  + ALE  +    +A P L   + Q 
Sbjct: 391 GPTPTPVDTFVGTTAKLA--YTIAGGV-RLEME--VRALESESLAEEVASPHLVVANNQV 445

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A F   G+ +    ++++GA +V   +  + L  TP +   G I + I   V++  +G +
Sbjct: 446 A-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGAS 502

Query: 345 AGDMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            G  P         + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG L
Sbjct: 503 PGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYL 562

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F  ++   +++E+ I  TP +++
Sbjct: 563 FSYTKITDQDSELLIFITPKIIE 585


>gi|218560386|ref|YP_002393299.1| general secretory pathway component, cryptic [Escherichia coli S88]
 gi|218367155|emb|CAR04929.1| general secretory pathway component, cryptic [Escherichia coli S88]
 gi|307555412|gb|ADN48187.1| general secretory pathway component [Escherichia coli ABU 83972]
          Length = 650

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 560 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600


>gi|332085659|gb|EGI90823.1| putative general secretion pathway protein D domain protein
           [Shigella dysenteriae 155-74]
          Length = 303

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 31/192 (16%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSST 302
           +  +L AL        LA P++  +  + ASF             T+ G +++ TV   T
Sbjct: 80  WGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT 139

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
                     G  L  TP V     + L I+ EVS      N+   P++  R     V +
Sbjct: 140 ---------VGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLV 190

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +G T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +      ++P 
Sbjct: 191 KTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPT 245

Query: 423 AMRDLSRPDDHY 434
            +RD    DD Y
Sbjct: 246 IIRD----DDVY 253


>gi|300903573|ref|ZP_07121495.1| general secretion pathway protein D [Escherichia coli MS 84-1]
 gi|301305534|ref|ZP_07211626.1| general secretion pathway protein D [Escherichia coli MS 124-1]
 gi|300404446|gb|EFJ87984.1| general secretion pathway protein D [Escherichia coli MS 84-1]
 gi|300839229|gb|EFK66989.1| general secretion pathway protein D [Escherichia coli MS 124-1]
 gi|315255908|gb|EFU35876.1| general secretion pathway protein D [Escherichia coli MS 85-1]
          Length = 650

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 560 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600


>gi|317052313|ref|YP_004113429.1| type II and III secretion system protein [Desulfurispirillum
           indicum S5]
 gi|316947397|gb|ADU66873.1| type II and III secretion system protein [Desulfurispirillum
           indicum S5]
          Length = 683

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 22/192 (11%)

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           D++V GVL+   F   L  L     + TL+ PT+T ++  + +  S   + Y+  ++ + 
Sbjct: 290 DYTV-GVLNPGKFAGFLQFLSLHGTVHTLSNPTITTLNNVTGNVYSIRTYPYQVTTTESS 348

Query: 304 ATSVTTHDY------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRK 355
           A       Y      GV L  TP +++ G I L +      PV+G        P+   R+
Sbjct: 349 ANVREARTYFEDVKIGVSLTVTPNIVNNGDILLEVL-----PVVGEIYEENFNPASGERE 403

Query: 356 ADTTVELP--------SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
              TVE          +  +  + GL+ +   +   GIP+LS+IP+LG LFR+ R  +  
Sbjct: 404 KPQTVEQAIRTILRTRNNHSYFIGGLIYEKNVESTSGIPVLSRIPVLGRLFRSDRRVQSR 463

Query: 408 TEIFIAATPFLV 419
            E+ I  TP ++
Sbjct: 464 QELVIVLTPKII 475


>gi|167041767|gb|ABZ06510.1| putative bacterial type II and III secretion system protein
           [uncultured marine microorganism HF4000_010L19]
          Length = 536

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + AL+       ++ P++  ++ Q A  T G +  Y+   ++ G T+    +  + L  T
Sbjct: 380 IEALQSLGISNIISSPSVFTLNNQEAKITQGTEIAYQV--TADGTTTTEFKEAALSLVVT 437

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P+V+  G I L IQ     P   V   D P+ +  +  T + +  G  +V+ G+  +   
Sbjct: 438 PSVIGDGNILLDIQVNNDSPTT-VAGSDEPAIKTNEIKTKLLVSDGDIVVIGGIKINTAT 496

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             K   P +SK+P++G LF+    + +  E+ I   P ++
Sbjct: 497 DTKTATPGMSKLPVVGNLFKGKAVSDKMDELLIFIAPRVI 536


>gi|307578579|gb|ADN62548.1| type IV pilus secretin PilQ [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 581

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 97/212 (45%), Gaps = 14/212 (6%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           GSS+  ++    D GG   +         +++ G   +F+ +  L AL++ +    ++ P
Sbjct: 363 GSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLG--PKFNLDLELSALQQESRGEVISNP 420

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLR 331
            +   + +      G +  Y T++        T +    +  + L  TPT+ +  R+ L 
Sbjct: 421 RIVTANQREGYIKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLN 480

Query: 332 I---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           +   + E+ + +   N G +P+   R+ +T V +  G T+V+ G+ +   +     +P L
Sbjct: 481 MTVKKDEIDQMITIANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFL 540

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +P LG LF+    ++++ E+ I  TP +++
Sbjct: 541 GDVPFLGNLFKKRGKDKQKAELLIFVTPKVLR 572


>gi|269213782|ref|ZP_06158175.1| type IV pilus secretin PilQ [Neisseria cinerea ATCC 14685]
 gi|269145356|gb|EEZ71774.1| type IV pilus secretin PilQ [Neisseria cinerea ATCC 14685]
          Length = 327

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 3/167 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF- 318
           L A E+ +  +TLA P +   + Q A   SG +  Y+  S+S   T+ TT     VL   
Sbjct: 156 LSASEQLSKTKTLANPRVLTQNRQEAKIESGTEIPYQDTSTSGNNTTTTTTFKKAVLGLV 215

Query: 319 -TPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            TP +   G+I + ++     P+   V        + +  DT   + +GGT+++ G+ ++
Sbjct: 216 VTPNITPDGQIIMNVKINKDTPIDCRVKNEATKCIQTKNLDTQAMVENGGTLIVGGIYEE 275

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +       IPLL  IP++G LF+  + N+   E+ I  TP ++  V 
Sbjct: 276 ENGNTLTKIPLLGDIPVIGNLFKTRQNNQSRRELLIFITPRIMDTVG 322


>gi|88704159|ref|ZP_01101873.1| General secretion (type II) pathway protein D precursor
           [Congregibacter litoralis KT71]
 gi|88701210|gb|EAQ98315.1| General secretion (type II) pathway protein D precursor
           [Congregibacter litoralis KT71]
          Length = 745

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 4/162 (2%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSV---TTHDYGV 314
           VL+AL   + I  ++ P++  +   +A  + G Q  + +  + + G  SV   T  D GV
Sbjct: 545 VLNALSEESLINVISSPSVMVLDNHTAFISVGDQVPVLQGQTITNGGNSVQNITYRDTGV 604

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L   P+V + G + + I+  V +     +A    ++  R  ++ V + S  ++VL GL+
Sbjct: 605 QLSVRPSVNAGGLVTMDIEQSVIDVGSIDSATGQRAFLDRTINSRVAVRSSESVVLGGLI 664

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +++      G+P+L +IP+ G+LF  +  +   TE+ +  TP
Sbjct: 665 RENSSLGDSGVPILREIPLFGSLFGTTTTDSRRTELLVIITP 706


>gi|171321858|ref|ZP_02910757.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
 gi|171092856|gb|EDT38111.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
          Length = 895

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 35/248 (14%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           + +VTL V + EV  +    +G Q+        P K   +  GG   +EG   ++  +L 
Sbjct: 333 QSEVTLDVQVLEVNMNDSLDLGVQY--------PGKVQFSALGG---AEGAALTLGDLLR 381

Query: 252 ---DRFSFET-------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              DR    +        +  L++    +TLA P +   + + AS   G +    T +++
Sbjct: 382 MNRDRIGVSSESGGLALAIDMLQKRGKTKTLANPKIRVRNLEKASIKIGERVPIVTTTNA 441

Query: 302 TGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRV 353
            G    SV+  D G++L   P +     + +++  EVS  +       G+ A    S   
Sbjct: 442 NGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILSKETTKTGLVAY---SLGT 498

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412
           R A+T +   +G T +LAGL+K +      G+P +S +P+LG LF  NSR N E +EI +
Sbjct: 499 RNAETLMTAKNGETQILAGLVKRNESDSIAGLPGISGLPVLGRLFGSNSRSN-ERSEIVL 557

Query: 413 AATPFLVK 420
             TP + +
Sbjct: 558 LITPHIER 565


>gi|253996576|ref|YP_003048640.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
 gi|253983255|gb|ACT48113.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
          Length = 583

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 110/276 (39%), Gaps = 48/276 (17%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------------------SSSGP 226
           +NL+ ++ E QV L+  I  V+ +   Q G   S+ G                  SSSG 
Sbjct: 271 LNLMQVSIERQVILEAKILNVQLNDQSQSGVNWSVFGRSGSNTGIVGNINANTRLSSSGN 330

Query: 227 SKSFAADFG---GKFVSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLT 278
               + D     G  +S     ++ G      L   +F T+L  LE    ++ L+ P ++
Sbjct: 331 GNLVSGDLTASTGTVLSNAATTALGGPLFAIALQGANFSTLLSFLETQGDVQVLSSPRIS 390

Query: 279 AISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDY------GVVLHFTPTVLSPGR 327
           +I+ Q A    G    + T      ++S GAT+            G+ L  TP +     
Sbjct: 391 SINNQKAVLKVGTDEFFVTGISSNTTASVGATTTVPEVILQPFFSGITLDVTPQIDKDDN 450

Query: 328 IGLRIQTEVSEP-------VIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           I L +   +S+         +G  AG     + S  + + D+ V    G  IV+ GL+ +
Sbjct: 451 IILHMHPSISQVSTVNKQVTLGGTAGQINLPLASSNISETDSIVRTRDGRVIVIGGLMTE 510

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
                K  +P L  +  +GA FR    ++ +TE+ I
Sbjct: 511 SASSTKSKVPGLGDVKGVGAAFRQQSASKTKTELVI 546


>gi|170289478|ref|YP_001739716.1| type II and III secretion system protein [Thermotoga sp. RQ2]
 gi|170176981|gb|ACB10033.1| type II and III secretion system protein [Thermotoga sp. RQ2]
          Length = 387

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 18/227 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV + V + EV +D   ++G        S G  + F  ++        G  +V+   D F
Sbjct: 166 QVKISVIVTEVSKDYSNELGLNS--LDYSFGSGQEFNENWSATLGLVTGLINVQT--DVF 221

Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-VTTHDY 312
                 L  LE     +  A+P +   SG+ AS   G + +   +  + GA S + + D 
Sbjct: 222 GQILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQV--VLLQAEGAVSRIESIDV 279

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKAD--TTVELPSGGTIV 369
           GV +   P V+    + L +  +VS       AG+ + ++ V++ +  TT+ L +G T+V
Sbjct: 280 GVSIDIQPRVMDKEELELTLSPKVSH-----FAGEKLGTFAVKQNELSTTLFLKNGQTVV 334

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAA 414
           ++G   +D  Q   G+P+L+KIP++  LF  +  + +++E  IFI A
Sbjct: 335 ISGATIEDNAQTNSGVPILNKIPLIRYLFGGTMKKDSQKELYIFIKA 381


>gi|258627001|ref|ZP_05721799.1| MSHA biogenesis protein MshL [Vibrio mimicus VM603]
 gi|262172506|ref|ZP_06040184.1| MSHA biogenesis protein MshL [Vibrio mimicus MB-451]
 gi|258580675|gb|EEW05626.1| MSHA biogenesis protein MshL [Vibrio mimicus VM603]
 gi|261893582|gb|EEY39568.1| MSHA biogenesis protein MshL [Vibrio mimicus MB-451]
          Length = 558

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 19/189 (10%)

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATS 306
           V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y T  SS   TG  +
Sbjct: 346 VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNA 405

Query: 307 VTTHDY-------GVVLHFTPTVLSPGRIGLR-----IQTEVSEPVIGVNAG--DMPSYR 352
             + D        G+ L  TP +   G + L      I+ E     I  N+   ++P  R
Sbjct: 406 QASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKRITYNSQQIELPLAR 465

Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++D+ +    G  +V+ GL+K +       +P L  +P LG LFRN+    ++TE+
Sbjct: 466 SSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTEL 525

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 526 VILLKPTVV 534


>gi|237737584|ref|ZP_04568065.1| general secretion pathway protein D [Fusobacterium mortiferum ATCC
           9817]
 gi|229419464|gb|EEO34511.1| general secretion pathway protein D [Fusobacterium mortiferum ATCC
           9817]
          Length = 551

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSSTGATSVTTHDYGV 314
           ++ LE    +   + P++  + G+  SF        G+   +   ++   T+    + G+
Sbjct: 352 INLLESTQDLVVSSRPSILVLDGEEGSFKVAEEVIVGEQREEDEDTNKVITTPIFREAGI 411

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRV-------RKADTTVELPS 364
           +L  TPT+   G + L++  E+S   + VN  +     +Y         R  +TT+++ +
Sbjct: 412 ILKATPTIRKDGWVILKVLIEISNFKLKVNKDESEESGTYNSEGGSKVGRSIETTIKIKN 471

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           G TI + GL K  +  L   IP    +P++   F+N   + E ++I++
Sbjct: 472 GETIFIGGLKKATVHNLDSKIPYFGTLPMINFFFKNQNISHEISDIYV 519


>gi|253987556|ref|YP_003038912.1| hypothetical protein PAU_00073 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779006|emb|CAQ82166.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 344

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 4/150 (2%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P LTA   Q AS   G    Y  VS     ++V   +  + +  TP +L   +I L 
Sbjct: 195 IASPRLTASHQQLASIKQGSDIPY--VSQEKEKSTVQFKEAVLGMEVTPHILRKDKIRLS 252

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P I ++ G   +  + K +  T V + +G T++L G+ +    +  + IP LS
Sbjct: 253 LKISQNMPGISISQGGGENLTIDKQEIMTQVTVKNGETLILGGIFQQKKGEKTQKIPYLS 312

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP+LG+LF          E+ I  TP L+
Sbjct: 313 DIPLLGSLFDQKGHKHSRRELIIFITPQLM 342


>gi|167620691|ref|ZP_02389322.1| type II/III secretion system protein [Burkholderia thailandensis
           Bt4]
          Length = 572

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 443 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 500

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+
Sbjct: 501 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 560

Query: 411 FIAATPFLV 419
            +  TP +V
Sbjct: 561 VVYITPTVV 569


>gi|83720708|ref|YP_443529.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|257137686|ref|ZP_05585948.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|83654533|gb|ABC38596.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 576

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 447 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 504

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+
Sbjct: 505 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 564

Query: 411 FIAATPFLV 419
            +  TP +V
Sbjct: 565 VVYITPTVV 573


>gi|330010541|ref|ZP_08306775.1| general secretion pathway protein D [Klebsiella sp. MS 92-3]
 gi|328534526|gb|EGF61113.1| general secretion pathway protein D [Klebsiella sp. MS 92-3]
          Length = 657

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 20/219 (9%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
           ++  +L AL  +T    LA P++  +    A+F  G +    T S +T       +V   
Sbjct: 420 NWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGSQTTSGDNIFNTVERK 479

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGT 367
             G+ L   P +     + L I+ EVS      ++       ++  R  +  V + SG T
Sbjct: 480 TVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFNTRTVNNAVLVGSGET 539

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAATPFLVKPVAMR 425
           +V+ GLL   +    + +PLL  IP++GALFR  + + ++    +FI       +P  +R
Sbjct: 540 VVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLMLFI-------RPTIIR 592

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           D     D Y      +   FN        KE+SE    N
Sbjct: 593 D----RDEYRQASSGQYTAFNNAQTKQRGKESSEASLSN 627


>gi|258623356|ref|ZP_05718360.1| MSHA biogenesis protein MshL [Vibrio mimicus VM573]
 gi|258584322|gb|EEW09067.1| MSHA biogenesis protein MshL [Vibrio mimicus VM573]
          Length = 554

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 19/189 (10%)

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATS 306
           V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y T  SS   TG  +
Sbjct: 342 VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNA 401

Query: 307 VTTHDY-------GVVLHFTPTVLSPGRIGLR-----IQTEVSEPVIGVNAG--DMPSYR 352
             + D        G+ L  TP +   G + L      I+ E     I  N+   ++P  R
Sbjct: 402 QASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKRITYNSQQIELPLAR 461

Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++D+ +    G  +V+ GL+K +       +P L  +P LG LFRN+    ++TE+
Sbjct: 462 SSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTEL 521

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 522 VILLKPTVV 530


>gi|167582578|ref|ZP_02375452.1| type II/III secretion system protein [Burkholderia thailandensis
           TXDOH]
          Length = 580

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 451 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 508

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+
Sbjct: 509 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 568

Query: 411 FIAATPFLV 419
            +  TP +V
Sbjct: 569 VVYITPTVV 577


>gi|116071978|ref|ZP_01469246.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. BL107]
 gi|116065601|gb|EAU71359.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. BL107]
          Length = 744

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 87/174 (50%), Gaps = 10/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-- 312
           SF + + A+  +++ +TLA+PTL    GQ A   +G   +  +VS++  +   T  +Y  
Sbjct: 546 SFYSYVEAVIESSSAKTLAQPTLLVQEGQEAEVQTG-TSVITSVSTTDTSNGSTQFEYSR 604

Query: 313 ---GVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADTTVELPSG 365
              G+ L    + +   G + L I  E+S P     +  +  + +     +  ++ L   
Sbjct: 605 ENAGLSLKVKVSKIDDNGFVSLNIDPEISVPEPAGESNGVAIFNIVGRSLSSGSIRLRDR 664

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L G+++D  +++    P+L  +P++G LFR++   R + E+ I  TP +V
Sbjct: 665 QTLILTGVIQDQDKEIARKWPILGDLPVIGQLFRSTDSQRSKNELVILVTPMIV 718


>gi|53724296|ref|YP_104266.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|52427719|gb|AAU48312.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
          Length = 527

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 398 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 455

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+
Sbjct: 456 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 515

Query: 411 FIAATPFLV 419
            +  TP +V
Sbjct: 516 VVYITPTVV 524


>gi|262164147|ref|ZP_06031886.1| MSHA biogenesis protein MshL [Vibrio mimicus VM223]
 gi|262027675|gb|EEY46341.1| MSHA biogenesis protein MshL [Vibrio mimicus VM223]
          Length = 558

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 19/189 (10%)

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATS 306
           V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y T  SS   TG  +
Sbjct: 346 VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNA 405

Query: 307 VTTHDY-------GVVLHFTPTVLSPGRIGLR-----IQTEVSEPVIGVNAG--DMPSYR 352
             + D        G+ L  TP +   G + L      I+ E     I  N+   ++P  R
Sbjct: 406 QASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKRITYNSQQIELPLAR 465

Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++D+ +    G  +V+ GL+K +       +P L  +P LG LFRN+    ++TE+
Sbjct: 466 SSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTEL 525

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 526 VILLKPTVV 534


>gi|153215373|ref|ZP_01949971.1| MSHA biogenesis protein MshL [Vibrio cholerae 1587]
 gi|124114744|gb|EAY33564.1| MSHA biogenesis protein MshL [Vibrio cholerae 1587]
          Length = 559

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 107/261 (40%), Gaps = 38/261 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSE-------- 241
           QV L+  I EV      Q G   S   SS+G S +  +     D  G  ++         
Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSNGNPITSVLPGLDAI 336

Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
               GG  +V  V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y T
Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394

Query: 298 VSSS---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340
             SS   TG  +  + D        G+ L  TP +   G + L +   V E        +
Sbjct: 395 DLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454

Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 ++P  R  +R++D+ +    G  +V+ GL+K +       +P L  +P LG LF
Sbjct: 455 YRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RN+    ++TE+ I   P +V
Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535


>gi|2897962|gb|AAC38377.1| EscC [Escherichia coli]
          Length = 512

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 104/227 (45%), Gaps = 39/227 (17%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           Q+ + V+I +V  + L+Q+G   S T     G+ +  S +   +     +S   +F ++ 
Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQVNISSSVISNASNFMIR- 333

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307
                     ++AL++ +  + L++P++  ++   A         Y  VS    A+  S+
Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLRSI 382

Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGD----MPSY 351
           T+   G +L  TP +L               R+ L IQ + ++     NA D    +P  
Sbjct: 383 TS---GTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSTLPEV 438

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           +  +  T   L +G +++L G ++D     K+GIPLLS IP++G+LF
Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485


>gi|88811950|ref|ZP_01127203.1| Fimbrial assembly protein pilQ precursor [Nitrococcus mobilis
           Nb-231]
 gi|88790834|gb|EAR21948.1| Fimbrial assembly protein pilQ precursor [Nitrococcus mobilis
           Nb-231]
          Length = 686

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 3/172 (1%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G +  +  +  L A+E       ++ P +   + + A    G Q  ++  +SS GATSV 
Sbjct: 511 GKIGSYLLQLELSAMENENRGNLISTPRVITTNQKEAYIKQGVQIPFQQATSS-GATSVQ 569

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             +  + L  TP +    RI L +Q          NAG  P+   +   T V + +G TI
Sbjct: 570 FKEAVLGLTVTPQITPDDRILLDLQVTKDSRGEQTNAG--PAINTQSLGTQVLVDNGETI 627

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           VL G+ + +  +    +P   ++P+LG LFRN+       E+ I  TP ++K
Sbjct: 628 VLGGVYERNKNRTINRVPFFGELPLLGWLFRNTVRVDNNKELLIFVTPKILK 679


>gi|152968741|ref|YP_001333850.1| pullulanase D protein [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238893139|ref|YP_002917873.1| pullulanase-specific type II secretion system secretin [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150953590|gb|ABR75620.1| Pullulanase D protein [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238545455|dbj|BAH61806.1| pullulanase-specific type II secretion system secretin [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 657

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 20/219 (9%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
           ++  +L AL  +T    LA P++  +    A+F  G +    T S +T       +V   
Sbjct: 420 NWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGSQTTSGDNIFNTVERK 479

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGT 367
             G+ L   P +     + L I+ EVS      ++       ++  R  +  V + SG T
Sbjct: 480 TVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFNTRTVNNAVLVGSGET 539

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAATPFLVKPVAMR 425
           +V+ GLL   +    + +PLL  IP++GALFR  + + ++    +FI       +P  +R
Sbjct: 540 VVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLMLFI-------RPTIIR 592

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           D     D Y      +   FN        KE+SE    N
Sbjct: 593 D----RDEYRQASSGQYTAFNNAQTKQRGKESSEASLSN 627


>gi|90020782|ref|YP_526609.1| MSHA biogenesis protein MshL [Saccharophagus degradans 2-40]
 gi|89950382|gb|ABD80397.1| type II and III secretion system protein [Saccharophagus degradans
           2-40]
          Length = 543

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 25/194 (12%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----------VSSSTGATSV 307
           +L  LE    ++ L+ P ++ ++ Q A    G    + T            ++S     +
Sbjct: 337 LLSLLETQGNVQVLSSPRVSTVNNQKAVIRVGSDEFFVTGISSQTTSTAASTTSAPNIEL 396

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGDMPS--YRVRKADT 358
           T+   G+ L  TP +   G + L +   VSE         +G     +P     VR++D+
Sbjct: 397 TSFFSGISLDVTPQIADNGDVILHVHPIVSEVTDQNKDITLGNEKFSLPLALREVRESDS 456

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V   SG  IVL GL+K+ +  +    P L  +P+L  LFR      E+TE+ I     L
Sbjct: 457 IVRAQSGQIIVLGGLMKEKLNDVYSKRPGLGDVPVLNTLFRKRSKVSEKTELVI-----L 511

Query: 419 VKPVAMRDLSRPDD 432
           ++P+ + D +  DD
Sbjct: 512 LRPIVVEDNTFADD 525


>gi|254517138|ref|ZP_05129196.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
 gi|219674643|gb|EED31011.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
          Length = 770

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 20/191 (10%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSV---TTHDYGV 314
           VL+AL   + I  ++ P++  +    A  + G Q  + +  + + G  SV   T  D GV
Sbjct: 570 VLNALSEESLINVISTPSVMVLDNHVAFISVGDQVPVLQGQTITNGGNSVQNITYRDTGV 629

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS----YRVRKADTTVELPSGGTIVL 370
            L   P+V + G + + I+    + VI V A D  +    +  R  ++ V + S  ++VL
Sbjct: 630 QLSVRPSVNAGGLVTMDIE----QSVIDVGAIDSATGQRAFLDRTINSRVAVRSSESVVL 685

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            GL++++      G+P+L +IP+ G+LF  +  +   TE+ +  TP        R L   
Sbjct: 686 GGLIRENSSLGDSGVPILREIPLFGSLFGTTTTDSRRTELLVIITP--------RALYNE 737

Query: 431 DDHYSVEDDAK 441
           D+  +V D+ +
Sbjct: 738 DELRAVSDEMR 748


>gi|15836975|ref|NP_297663.1| fimbrial assembly protein [Xylella fastidiosa 9a5c]
 gi|9105203|gb|AAF83183.1|AE003888_16 fimbrial assembly protein [Xylella fastidiosa 9a5c]
          Length = 637

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 99/220 (45%), Gaps = 14/220 (6%)

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERAT 267
           IG   +   SS+  ++    D GG   +         +++ G   +F+ +  L AL++ +
Sbjct: 411 IGSHVTTADSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLG--PKFNLDLELSALQQES 468

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVL 323
               ++ P +   + +      G +  Y T++        T +    +  + L  TPT+ 
Sbjct: 469 RGEVISNPRIVTANQREGYIKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTIT 528

Query: 324 SPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +  R+ L +   + E+ + +   N G +P+   R+ +T V +  G T+V+ G+ +   + 
Sbjct: 529 NDNRVFLNMTVKKDEIDQMITIANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRN 588

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               +P L  +P LG LF+    ++++ E+ I  TP +++
Sbjct: 589 SVSKVPFLGDVPFLGNLFKKRGKDKQKAELLIFVTPKVLR 628


>gi|262401512|ref|ZP_06078079.1| MSHA biogenesis protein MshL [Vibrio sp. RC586]
 gi|262352227|gb|EEZ01356.1| MSHA biogenesis protein MshL [Vibrio sp. RC586]
          Length = 556

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 19/189 (10%)

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATS 306
           V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y T  SS   TG  +
Sbjct: 344 VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEFYVTDLSSVVGTGDNA 403

Query: 307 VTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYR 352
             + D        G+ L  TP +   G + L +   V E        V      ++P  R
Sbjct: 404 QASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIVYRSEEIELPLAR 463

Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++D+ +    G  +V+ GL+K +       +P L  +P LG LFRN+    ++TE+
Sbjct: 464 SSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTEL 523

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 524 VILLKPTVV 532


>gi|254291307|ref|ZP_04962101.1| MSHA biogenesis protein MshL [Vibrio cholerae AM-19226]
 gi|150422763|gb|EDN14716.1| MSHA biogenesis protein MshL [Vibrio cholerae AM-19226]
          Length = 559

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 107/261 (40%), Gaps = 38/261 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSE-------- 241
           QV L+  I EV      Q G   S   SS+G S +  +     D  G  ++         
Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGAITQDSSGNPITSVLPGLDAI 336

Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
               GG  +V  V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y T
Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394

Query: 298 VSSS---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340
             SS   TG  +  + D        G+ L  TP +   G + L +   V E        +
Sbjct: 395 DLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454

Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 ++P  R  +R++D+ +    G  +V+ GL+K +       +P L  +P LG LF
Sbjct: 455 YRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RN+    ++TE+ I   P +V
Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535


>gi|281413054|ref|YP_003347133.1| type II and III secretion system protein [Thermotoga naphthophila
           RKU-10]
 gi|281374157|gb|ADA67719.1| type II and III secretion system protein [Thermotoga naphthophila
           RKU-10]
          Length = 387

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 107/227 (47%), Gaps = 18/227 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV + V + EV +D   ++G        S G  + F  ++        G  +V+   D F
Sbjct: 166 QVKISVIVTEVSKDYSNELGLNS--LDYSFGSGQEFNENWSATLGLVTGLINVQT--DVF 221

Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-VTTHDY 312
                 L  LE     +  A+P +   SG+ AS   G + +   +  + GA S + + D 
Sbjct: 222 GQILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQV--VLLQAEGAVSRIESIDV 279

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKAD--TTVELPSGGTIV 369
           GV +   P V+    + L +  +VS       AG+ + ++ V++ +  TT+ L +G T+V
Sbjct: 280 GVSIDIQPRVMDKEELELTLSPKVSH-----FAGEKLGTFAVKQNELSTTLFLKNGQTVV 334

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAA 414
           ++G   +D  Q   G+P+L+KIP++  LF     + +++E  IFI A
Sbjct: 335 ISGATIEDNAQTNSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKA 381


>gi|295096434|emb|CBK85524.1| general secretion pathway protein D [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 638

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 120/279 (43%), Gaps = 34/279 (12%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--G 236
           +S +KV++ L+I    QV ++  IAEV+      +G Q +        SK     FG  G
Sbjct: 328 NSLEKVIDKLDIR-RPQVLVEAIIAEVQDGNGLDLGVQWT--------SKHGGVQFGATG 378

Query: 237 KFVSEGGDFSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             +S+  + ++KG              F  ++ AL        L+ P++  +  + ASF 
Sbjct: 379 LPISQIKNGTMKGASFTGLATGFFNGDFGALVTALSTDGKNDILSTPSVVTLDNKEASFN 438

Query: 289 SGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342
            G      + S +T       SV     G  L   P +     I L+I+ EVS  +    
Sbjct: 439 VGQDVPVLSGSQTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDNSAT 498

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            ++   P++  R  +  V + SG T+VL GL+++  +Q    +PLL  IP++G LFR + 
Sbjct: 499 EDSSLGPTFNTRTINNEVMVHSGQTVVLGGLMENVTKQSVSKVPLLGDIPLVGQLFRYTS 558

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
            +  +  + +      +    +RD    DD+YS     K
Sbjct: 559 QDTSKRNLMV-----FIHTTVLRD----DDNYSAASKEK 588


>gi|300113065|ref|YP_003759640.1| type IV pilus secretin PilQ [Nitrosococcus watsonii C-113]
 gi|299539002|gb|ADJ27319.1| type IV pilus secretin PilQ [Nitrosococcus watsonii C-113]
          Length = 699

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 4/141 (2%)

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           S Q  +    G  +    +SS+GATSV+     + L  TP +    RI + +   V++  
Sbjct: 557 SNQKEAIIEQGTEIPYQRASSSGATSVSFKKAVLSLKVTPQITPDDRIIMDLG--VTKDS 614

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +G     +PS   R+  T V + +G T+VL G+ + +  +    IP L  +P  G LFR+
Sbjct: 615 VGKVFAGVPSINTREVSTQVLVNNGQTVVLGGIYEQEKNRAVRRIPFLGDLPYAGILFRD 674

Query: 401 -SRFNREETEIFIAATPFLVK 420
            + FN +  E+ I  TP ++K
Sbjct: 675 KTEFNNKR-ELLIFVTPKIIK 694


>gi|332297951|ref|YP_004439873.1| type II and III secretion system protein [Treponema brennaborense
           DSM 12168]
 gi|332181054|gb|AEE16742.1| type II and III secretion system protein [Treponema brennaborense
           DSM 12168]
          Length = 667

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 8/155 (5%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGA---TSVTTHDY-GVVLHFTPTVLSP 325
             + TL  +SGQ  +F +     Y+   +   TG    T +T     G+VL     +   
Sbjct: 480 FTDTTLYGVSGQKITFKNTNTFRYRDSNIDPQTGKPLYTGITREIISGLVLEIDGWISGD 539

Query: 326 GRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           G + + +   VS+  + V+   G+ P    +   T V+  SG  +VL+GL ++D   +++
Sbjct: 540 GMVTMDVTASVSKRGVDVSTKTGNPPPTSEKIVTTQVKARSGEPVVLSGLTQNDKTFVEQ 599

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           G+P +S+IP+LG LF++     E+ E+ I   P +
Sbjct: 600 GVPFISRIPVLGNLFKSRDETEEKNEMVIYLVPHI 634


>gi|153825669|ref|ZP_01978336.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-2]
 gi|229520028|ref|ZP_04409457.1| MSHA biogenesis protein MshL [Vibrio cholerae TM 11079-80]
 gi|297580540|ref|ZP_06942466.1| MSHA biogenesis protein MshL [Vibrio cholerae RC385]
 gi|149740699|gb|EDM54806.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-2]
 gi|229342977|gb|EEO07966.1| MSHA biogenesis protein MshL [Vibrio cholerae TM 11079-80]
 gi|297534956|gb|EFH73791.1| MSHA biogenesis protein MshL [Vibrio cholerae RC385]
          Length = 559

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 107/261 (40%), Gaps = 38/261 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSE-------- 241
           QV L+  I EV      Q G   S   SS+G S +  +     D  G  ++         
Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSSGNPITSVLPGLDAI 336

Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
               GG  +V  V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y T
Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394

Query: 298 VSSS---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340
             SS   TG  +  + D        G+ L  TP +   G + L +   V E        +
Sbjct: 395 DLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454

Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 ++P  R  +R++D+ +    G  +V+ GL+K +       +P L  +P LG LF
Sbjct: 455 YRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RN+    ++TE+ I   P +V
Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535


>gi|262044789|ref|ZP_06017834.1| general secretion pathway protein D [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037872|gb|EEW39098.1| general secretion pathway protein D [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 657

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 20/214 (9%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
           ++  +L AL  +T    LA P++  +    A+F  G +    T S +T       +V   
Sbjct: 420 NWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGSQTTSGDNIFNTVERK 479

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGT 367
             G+ L   P +     + L I+ EVS      ++       ++  R  +  V + SG T
Sbjct: 480 TVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFNTRTVNNAVLVGSGET 539

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAATPFLVKPVAMR 425
           +V+ GLL   +    + +PLL  IP++GALFR  + + ++    +FI       +P  +R
Sbjct: 540 VVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLMLFI-------RPTIIR 592

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           D     D Y      +   FN        KE+SE
Sbjct: 593 D----RDEYRQASSGQYTAFNNAQTKQRGKESSE 622


>gi|15835475|ref|NP_297234.1| general secretion pathway protein D [Chlamydia muridarum Nigg]
 gi|270285655|ref|ZP_06195049.1| general secretion pathway protein D [Chlamydia muridarum Nigg]
 gi|270289664|ref|ZP_06195966.1| general secretion pathway protein D [Chlamydia muridarum Weiss]
 gi|301337051|ref|ZP_07225253.1| general secretion pathway protein D [Chlamydia muridarum MopnTet14]
 gi|7190887|gb|AAF39657.1| general secretion pathway protein D [Chlamydia muridarum Nigg]
          Length = 759

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +F+ +GG    KG++  + F      L     +R  A P++  ++ Q+ +  +  + +  
Sbjct: 515 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 568

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            VSS           YG+++   P +      G+  + ++T+++    G N  D P    
Sbjct: 569 AVSSEKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGKNQADRPDVTR 628

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F+ 
Sbjct: 629 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDATSDSQTEMFMF 688

Query: 414 ATP-FLVKPV 422
            TP  L  PV
Sbjct: 689 ITPKILDNPV 698


>gi|15643874|ref|NP_228923.1| general secretion pathway protein D, putative [Thermotoga maritima
           MSB8]
 gi|4981663|gb|AAD36193.1|AE001770_5 general secretion pathway protein D, putative [Thermotoga maritima
           MSB8]
          Length = 387

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 18/227 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV + V + EV +D   ++G        S G  + F  ++        G   V+   D F
Sbjct: 166 QVKISVIVTEVSKDYSNELGLNS--LDYSFGSGQEFNENWSATLGLVTGIIDVQT--DVF 221

Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-VTTHDY 312
                 L  LE     +  A+P +   SG+ AS   G + +   +  + GA S + + D 
Sbjct: 222 GQILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQV--VLLQAEGAVSRIESIDV 279

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKAD--TTVELPSGGTIV 369
           GV +   P V+    + L +  +VS       AG+ + ++ V++ +  TT+ L +G T+V
Sbjct: 280 GVSIDIQPRVMDKEELELTLSPKVSH-----FAGEKLGTFAVKQNELSTTLFLKNGQTVV 334

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAA 414
           ++G   +D  Q   G+P+L+KIP++  LF     + +++E  IFI A
Sbjct: 335 ISGATIEDSAQTSSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKA 381


>gi|225848499|ref|YP_002728662.1| PilQ [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643373|gb|ACN98423.1| PilQ [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 604

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 105/249 (42%), Gaps = 24/249 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSG-------PSKSFAADF 234
           Q++++  I ++    +K +G Q               I G++S        P  ++A DF
Sbjct: 354 QISIEARIVQISSKNVKDLGIQWGGLASNIDNNNTKIIAGTNSTSYLANYRPGSAYAVDF 413

Query: 235 GGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                   G FS+  +L   +   +  L AL+     + L++P++  I G++A  + G +
Sbjct: 414 PAVQSKIPGGFSLGFILGGTQNFLDIRLSALQSIGKSKILSKPSVITIDGETAEISQGYE 473

Query: 293 HLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
             Y T  ++ G T  SV+     + L+ TP   + G I + +      P         P 
Sbjct: 474 IPYTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDLIITQDIPDFKNLLLGNPP 533

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            + +   + V    G  +V+ G+L+        G+P L  IPILG LF+ +      TE+
Sbjct: 534 IQTKTVTSKVVAKDGSVVVIGGILEKTEDTQTSGVPGLMNIPILGNLFKENFKQDTSTEL 593

Query: 411 FIAATPFLV 419
            I  +P +V
Sbjct: 594 LIFLSPKIV 602


>gi|298527693|ref|ZP_07015097.1| type II and III secretion system protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511345|gb|EFI35247.1| type II and III secretion system protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 553

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 16/173 (9%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG-QHLYKTVSSSTGATSVTTHDY-- 312
           F   + ALE    +  ++ P + +   Q A  TSG  ++  + ++ S  AT     DY  
Sbjct: 372 FSATIQALETFGQVSVVSNPHVRSRHLQPALVTSGTTRNFIQEITRSRRATDEDWVDYSV 431

Query: 313 -------GVVLHFTPTVLSPGRIGLRI-----QTEVSEPV-IGVNAGDMPSYRVRKADTT 359
                  GV+L   P +   G + L I     Q ++SE   IG +   +P   VR  +T 
Sbjct: 432 NTGTAFEGVMLGVVPFITDNGDVDLDIFPITSQVDLSETAKIGGDQITLPKVNVRNVNTK 491

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           V +  G T++L GL++   ++ +   P  S+IP LG LF+    +++ +E+ +
Sbjct: 492 VRVNDGDTVILGGLIQKGSRERERATPGASRIPGLGWLFKQREDSQDLSELVV 544


>gi|238022253|ref|ZP_04602679.1| hypothetical protein GCWU000324_02160 [Kingella oralis ATCC 51147]
 gi|237866867|gb|EEP67909.1| hypothetical protein GCWU000324_02160 [Kingella oralis ATCC 51147]
          Length = 699

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 2/161 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E     +T++ P +     Q A    G Q  Y T   S G+T+ +  D  + L   
Sbjct: 531 LSASEAEGRSKTISTPRVLTQDRQEAEIKQGYQVPY-TTRDSDGSTTTSFKDAVMSLKVL 589

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +    +I + +      P     + +  PS R +   T   +  GGT+V+ G+ ++ I
Sbjct: 590 PRITPDNKIIMDVTINKDTPDNTYQSSEGEPSIRTQSVKTQAMIEDGGTLVVGGVYQEVI 649

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           Q   + +P+L  +P+LG LF+    N    E+    TP ++
Sbjct: 650 QNNVKKVPMLGDLPVLGNLFKTRSRNNSRNELLFFITPRIM 690


>gi|71276554|ref|ZP_00652828.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Dixon]
 gi|71901093|ref|ZP_00683201.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
 gi|170730937|ref|YP_001776370.1| fimbrial assembly protein [Xylella fastidiosa M12]
 gi|71162625|gb|EAO12353.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Dixon]
 gi|71729136|gb|EAO31259.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
 gi|167965730|gb|ACA12740.1| fimbrial assembly protein [Xylella fastidiosa M12]
          Length = 630

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 99/220 (45%), Gaps = 14/220 (6%)

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERAT 267
           IG   +   SS+  ++    D GG   +         +++ G   +F+ +  L AL++ +
Sbjct: 404 IGSNVTTADSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLG--PKFNLDLELSALQQES 461

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVL 323
               ++ P +   + +      G +  Y T++        T +    +  + L  TPT+ 
Sbjct: 462 RGEVISNPRIVTANQREGYIKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTIT 521

Query: 324 SPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +  R+ L +   + E+ + +   N G +P+   R+ +T V +  G T+V+ G+ +   + 
Sbjct: 522 NDNRVFLNMTVKKDEIDQMITIANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRN 581

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               +P L  +P LG LF+    ++++ E+ I  TP +++
Sbjct: 582 SVSKVPFLGDVPFLGNLFKKRGKDKQKAELLIFVTPKVLR 621


>gi|255311500|ref|ZP_05354070.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis 6276]
 gi|255317802|ref|ZP_05359048.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis 6276s]
          Length = 921

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +   D G
Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865


>gi|222100424|ref|YP_002534992.1| General secretion pathway protein D [Thermotoga neapolitana DSM
           4359]
 gi|221572814|gb|ACM23626.1| General secretion pathway protein D [Thermotoga neapolitana DSM
           4359]
          Length = 387

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 18/227 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV + V + EV +D   ++G        S G  + F  ++        G  +V+   D F
Sbjct: 166 QVKISVIVTEVSKDYSNELGLNS--LDYSFGSGQEFNENWSATLGLVTGLINVQT--DVF 221

Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-VTTHDY 312
                 L  LE     +  A+P +   SG+ AS   G + +   +  + GA S + + D 
Sbjct: 222 GQILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQV--VLLQAEGAVSRIESIDV 279

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKAD--TTVELPSGGTIV 369
           GV +   P V+    + L +  +VS       AG+ + ++ V++ +  TT+ L +G T+V
Sbjct: 280 GVSIDIQPRVMDKEELELTLSPKVSH-----FAGEKLGTFAVKQNELSTTLFLKNGQTVV 334

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAA 414
           ++G   +D  Q   G+P+L+KIP++  LF  +  + +++E  IFI A
Sbjct: 335 ISGATIEDNAQTSSGVPILNKIPLIRYLFGGTMKKDSQKELYIFIKA 381


>gi|167838164|ref|ZP_02465023.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 572

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  ++++  +G      P+
Sbjct: 443 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DIAKDSVGEETASGPA 500

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+
Sbjct: 501 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 560

Query: 411 FIAATPFLV 419
            +  TP +V
Sbjct: 561 VVYITPTVV 569


>gi|296436215|gb|ADH18389.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis G/9768]
 gi|296438075|gb|ADH20236.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis G/11074]
 gi|297140576|gb|ADH97334.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis G/9301]
          Length = 921

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +   D G
Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865


>gi|217969269|ref|YP_002354503.1| type IV pilus secretin PilQ [Thauera sp. MZ1T]
 gi|217506596|gb|ACK53607.1| type IV pilus secretin PilQ [Thauera sp. MZ1T]
          Length = 711

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 1/161 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHF 318
           L ALE     R ++ P +   +   A    G Q      S+  G   +V   D  + L  
Sbjct: 544 LQALESDGRGRVVSSPRVLTANQVEALIKQGTQIPIPIPSTQVGGEPTVEYKDAVLSLKV 603

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            P++   GRI L +      P         PS   +   T V + +GGT+V+ G+ ++  
Sbjct: 604 RPSITPDGRIQLSVLVNKDRPDFTNVVLGRPSIDTKSVQTEVTVENGGTLVIGGVYEEQE 663

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              ++ +P+L ++P+LG LFR      E+ E+ +  TP LV
Sbjct: 664 LNGEDRVPVLGELPVLGGLFRTRSTIAEKKELLVFITPRLV 704


>gi|71900198|ref|ZP_00682337.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
 gi|71730031|gb|EAO32123.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
          Length = 603

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 99/220 (45%), Gaps = 14/220 (6%)

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERAT 267
           IG   +   SS+  ++    D GG   +         +++ G   +F+ +  L AL++ +
Sbjct: 377 IGSHVTTADSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLG--PKFNLDLELSALQQES 434

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVL 323
               ++ P +   + +      G +  Y T++        T +    +  + L  TPT+ 
Sbjct: 435 RGEVISNPRIVTANQREGYIKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTIT 494

Query: 324 SPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +  R+ L +   + E+ + +   N G +P+   R+ +T V +  G T+V+ G+ +   + 
Sbjct: 495 NDNRVFLNMTVKKDEIDQMITIANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRN 554

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               +P L  +P LG LF+    ++++ E+ I  TP +++
Sbjct: 555 SVSKVPFLGDVPFLGNLFKKRGKDKQKAELLIFVTPKVLR 594


>gi|77919277|ref|YP_357092.1| type II secretory pathway, component HofQ [Pelobacter carbinolicus
           DSM 2380]
 gi|77545360|gb|ABA88922.1| type II secretory pathway, component HofQ [Pelobacter carbinolicus
           DSM 2380]
          Length = 767

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 13/142 (9%)

Query: 298 VSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMP 349
           +S++TG   +T+V   D GV L   P +     I  ++  EVS     E + G   G   
Sbjct: 451 ISTTTGDVTSTNVQYIDVGVKLDVEPNIQLDDTIVTKLTLEVSSILEKEEIAG--GGSAL 508

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
                 A +++ L  G   ++ GL+++D+   ++ +P +  IPI+G LF      + ++E
Sbjct: 509 RISTTNAGSSLILKDGERTIIGGLIRNDLSDTRDTLPFIGSIPIIGHLFTGRSKEKNKSE 568

Query: 410 IFIAATPFLVKPVAMRDLSRPD 431
           I ++ TP +V+ V   D+ RPD
Sbjct: 569 ILLSITPHIVRSV---DMPRPD 587


>gi|182414666|ref|YP_001819732.1| type II and III secretion system protein [Opitutus terrae PB90-1]
 gi|177841880|gb|ACB76132.1| type II and III secretion system protein [Opitutus terrae PB90-1]
          Length = 895

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 41/217 (18%)

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--------- 296
           ++ GV+  F    V+ AL +      L+ P +T +SG  A+ T   +  Y          
Sbjct: 660 TISGVIGEFDVNAVVRALSQQQGTDLLSAPKVTVLSGNPATITVAQEMRYPQSFGQTQSQ 719

Query: 297 ------------TVSSSTGAT-SVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSE---- 338
                        V+ + G     T  + GV L  TPTV      I L +  +V+E    
Sbjct: 720 VGTGNASGGGSAGVAITAGTPQEFTKRNIGVELRVTPTVEEDDYSISLDLNPKVTEFDGF 779

Query: 339 -----PVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
                P I ++             P + VR   T V +  G T+V+ GL +++++++ + 
Sbjct: 780 VEYGGPSIAISGSTTVTVPSGFYQPIFSVRDIATKVTIWDGATLVMGGLTREEVKKVNDK 839

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +P+L  +P++G  FR+   + ++  + I  T  LV P
Sbjct: 840 VPILGDLPLIGRAFRSKGESAQKRNLLIFVTANLVNP 876


>gi|15605407|ref|NP_220193.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis D/UW-3/CX]
 gi|3329125|gb|AAC68269.1| probable Yop proteins translocation protein C/general secretion
           pathway protein [Chlamydia trachomatis D/UW-3/CX]
 gi|297748805|gb|ADI51351.1| General secretion pathway protein D [Chlamydia trachomatis D-EC]
 gi|297749685|gb|ADI52363.1| General secretion pathway protein D [Chlamydia trachomatis D-LC]
          Length = 921

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +   D G
Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865


>gi|237805025|ref|YP_002889179.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273325|emb|CAX10240.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 921

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +   D G
Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865


>gi|254357308|ref|ZP_04973582.1| type IV pilus secretin PilQ [Burkholderia mallei 2002721280]
 gi|148026372|gb|EDK84457.1| type IV pilus secretin PilQ [Burkholderia mallei 2002721280]
          Length = 552

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 423 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 480

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+
Sbjct: 481 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 540

Query: 411 FIAATPFLV 419
            +  TP +V
Sbjct: 541 VVYITPTVV 549


>gi|76789414|ref|YP_328500.1| general secretion pathway protein D [Chlamydia trachomatis
           A/HAR-13]
 gi|237803104|ref|YP_002888298.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis B/Jali20/OT]
 gi|76167944|gb|AAX50952.1| general secretion pathway protein D [Chlamydia trachomatis
           A/HAR-13]
 gi|231274338|emb|CAX11133.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 921

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +   D G
Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865


>gi|325521797|gb|EGD00533.1| putative type IV pilus secretin [Burkholderia sp. TJI49]
          Length = 215

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 11/165 (6%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+      G + V      + L   
Sbjct: 26  LSALEAQGRGQIVSRPRVVTADRAKAIVEQGAELPYQ-AKVGNGVSGVQFRRATLKLEVE 84

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG----LLK 375
           P +   GR+ L +  +V++  +G      P+   +   T VE+  GGT+ + G    L +
Sbjct: 85  PQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVEDGGTVAIGGIYERLRR 142

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           DD+ +    +PLL KIP+LGALFR+     + +E+ +  TP +V+
Sbjct: 143 DDVTR----VPLLGKIPVLGALFRHRAQREQRSELVVFITPTVVR 183


>gi|163802893|ref|ZP_02196781.1| MSHA biogenesis protein MshL [Vibrio sp. AND4]
 gi|159173300|gb|EDP58126.1| MSHA biogenesis protein MshL [Vibrio sp. AND4]
          Length = 531

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 105/255 (41%), Gaps = 34/255 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------GKFVSEGGDF 245
           QV L+  I EV      Q G   S   +S G S S   D           G  +  GG  
Sbjct: 257 QVILEAKILEVTLSDGYQQGIDWSNMSASIGNSGSIVVDRSPLSLPLDAIGTLL--GGQT 314

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG- 303
           +V       +F+ V++ +     +  L+ P +TA + Q +    G    + T +SS+ G 
Sbjct: 315 NV--TFSDGNFKAVMNFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGN 372

Query: 304 --------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------ 346
                      +T    G+ L  TP +   G + L +     EV E +  +N G      
Sbjct: 373 GENSNAVPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEIKKLNLGGEFNNV 432

Query: 347 DMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            +P  +  +R++D+ +    G  +V+ GL+K    +    +P L  +P LG LFRN    
Sbjct: 433 QLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNV 492

Query: 405 REETEIFIAATPFLV 419
            ++TE+ I   P +V
Sbjct: 493 TQKTELVILLKPTVV 507


>gi|229530247|ref|ZP_04419635.1| MSHA biogenesis protein MshL [Vibrio cholerae 12129(1)]
 gi|229332020|gb|EEN97508.1| MSHA biogenesis protein MshL [Vibrio cholerae 12129(1)]
          Length = 559

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 106/261 (40%), Gaps = 38/261 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSE-------- 241
           QV L+  I EV      Q G   S   SS+G S    +     D  G  ++         
Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPGLDAI 336

Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
               GG  +V  V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y T
Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394

Query: 298 VSSS---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340
             SS   TG  +  + D        G+ L  TP +   G + L +   V E        +
Sbjct: 395 DLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454

Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 ++P  R  +R++D+ +    G  +V+ GL+K +       +P L  +P LG LF
Sbjct: 455 YRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RN+    ++TE+ I   P +V
Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535


>gi|166154016|ref|YP_001654134.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis 434/Bu]
 gi|301335216|ref|ZP_07223460.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis L2tet1]
 gi|165930004|emb|CAP03487.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis 434/Bu]
          Length = 921

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +   D G
Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865


>gi|296437143|gb|ADH19313.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis G/11222]
          Length = 921

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +   D G
Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865


>gi|188990354|ref|YP_001902364.1| Fimbrial assembly protein pilQ precursor [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167732114|emb|CAP50306.1| Fimbrial assembly protein pilQ precursor [Xanthomonas campestris
           pv. campestris]
          Length = 626

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 84/174 (48%), Gaps = 7/174 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--- 310
           F+ +  L AL++      ++ P +   + +      G +  Y T++  T   + T +   
Sbjct: 447 FNLDLELSALQQEGRGEVISNPRIVTSNQREGVIKQGREIGYVTITGGTAGQAATPNVQF 506

Query: 311 -DYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +  + L  TPT+ +  R+ L +   + EV E +   N G +PS   R+ +T V +  G 
Sbjct: 507 KEVLLELKVTPTITNDNRVFLNMNVKKDEVDELIELPNYGTVPSINRREINTAVLVDDGQ 566

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           T+V+ G+ +   +     +P L  +P LG LF++   ++++ E+ I  TP +++
Sbjct: 567 TVVIGGVYEFSDRSSVNKVPFLGDVPFLGNLFKSRGRSKDKAELLIFITPKVLR 620


>gi|255349063|ref|ZP_05381070.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis 70]
 gi|255503601|ref|ZP_05381991.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis 70s]
 gi|255507281|ref|ZP_05382920.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis D(s)2923]
 gi|296439006|gb|ADH21159.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis E/11023]
          Length = 921

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +   D G
Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865


>gi|166154891|ref|YP_001653146.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|165930879|emb|CAP06441.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 921

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +   D G
Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865


>gi|289525718|emb|CBJ15199.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis Sweden2]
 gi|296435288|gb|ADH17466.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis E/150]
          Length = 921

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +   D G
Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865


>gi|255320222|ref|ZP_05361407.1| fimbrial assembly protein PilQ [Acinetobacter radioresistens SK82]
 gi|255302661|gb|EET81893.1| fimbrial assembly protein PilQ [Acinetobacter radioresistens SK82]
          Length = 726

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 5/176 (2%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           L  F  +  L AL+       ++ P +     Q A   SG Q  Y++ S   GA +V+T 
Sbjct: 549 LSDFMLDLELSALQADGYGEVISTPKVLTADKQQARVASGTQIPYQS-SEGGGANAVSTT 607

Query: 311 DY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           ++    + L+ TP++   G+I + +      P      G + +    + +T V + +G T
Sbjct: 608 EFVDATLSLNVTPSITPDGKIQMLLNITSDTPGNPTPTGQI-AINKNEINTNVLVNNGET 666

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +VL G+ + + +  +  +P+L  +P +G LFR    +  + E+ I  TP +V   A
Sbjct: 667 VVLGGIFEQETRNTQTKVPVLGDLPGVGRLFRRDAKSNNKRELLIFVTPRIVNDSA 722


>gi|237814100|ref|YP_002898551.1| type IV pilus secretin PilQ [Burkholderia pseudomallei MSHR346]
 gi|237503013|gb|ACQ95331.1| type IV pilus secretin PilQ [Burkholderia pseudomallei MSHR346]
          Length = 552

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 423 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 480

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+
Sbjct: 481 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 540

Query: 411 FIAATPFLV 419
            +  TP +V
Sbjct: 541 VVYITPTVV 549


>gi|42522439|ref|NP_967819.1| fimbrial assembly protein [Bdellovibrio bacteriovorus HD100]
 gi|39574971|emb|CAE78812.1| fimbrial assembly protein [Bdellovibrio bacteriovorus HD100]
          Length = 726

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 109/241 (45%), Gaps = 16/241 (6%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGP---SKSFAADFGGKFVSEGGD 244
           QV+++  I E +    + IG   S TG       ++ GP   + SF  +      S   +
Sbjct: 471 QVSIEGKIVEAKESFTRNIGVNWSATGAPIKLGSTARGPVNMNPSFNVNQSAAGSSGALN 530

Query: 245 FSVK-GVLDRFSFETVLHAL-ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           F++  G LD F   +   AL E    ++ ++ P +  +S + A      +   + V+ + 
Sbjct: 531 FNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQTTEVPVRQVTQNG 590

Query: 303 GATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADT 358
            AT  T       + L  TP V + G + +++          V++    ++ V  R+A+T
Sbjct: 591 TATQETFQFKPLTLKLEVTPQVTADGSVIMKVLVNRQFRGADVSSAGQGAFAVNSREANT 650

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V + +G T V+ G+ + D    + G+P   ++P +  LF+    ++E++E+ I  TP +
Sbjct: 651 RVLVKNGQTAVIGGIYQSDATDGEVGVPWFRELPFVSYLFKTKNISKEKSELLIFLTPRI 710

Query: 419 V 419
           +
Sbjct: 711 M 711


>gi|33599773|ref|NP_887333.1| putative type II secretion system protein [Bordetella
           bronchiseptica RB50]
 gi|33567370|emb|CAE31283.1| putative type II secretion system protein [Bordetella
           bronchiseptica RB50]
          Length = 545

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 21/179 (11%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GA 304
           SF   L+AL    +++ L+ PT+   +G  A  + G    Y T  S+T           +
Sbjct: 360 SFSVALNALRSFGSVKVLSNPTVRVRNGVPAYLSVGANVRYVTEISTTFNNIGGGSSNSS 419

Query: 305 TSVTTHDY--GVVLHFTPTVLSPGRIGLRI---QTEV---SEPVIGVNAGD---MPSYRV 353
           + V T     GVV+   P +   GR+ L +   QT+V   S  ++ V  G+   +P    
Sbjct: 420 SDVQTDSLFSGVVVGVAPFIHEDGRVELFVHPMQTQVQPQSLALVDVGNGNSVTLPIINT 479

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           +   TT+ L +G T+VL GL+        +G+P LS IP  G LF N   + +  E+ I
Sbjct: 480 KSITTTLNLNNGDTVVLGGLIDQQFTNANKGLPGLSDIPGAGVLFDNRSDSHKSRELVI 538


>gi|134283134|ref|ZP_01769835.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 305]
 gi|134245329|gb|EBA45422.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 305]
          Length = 575

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 446 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 503

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+
Sbjct: 504 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 563

Query: 411 FIAATPFLV 419
            +  TP +V
Sbjct: 564 VVYITPTVV 572


>gi|124268320|ref|YP_001022324.1| general secretion pathway protein D [Methylibium petroleiphilum
           PM1]
 gi|124261095|gb|ABM96089.1| general secretion pathway protein D [Methylibium petroleiphilum
           PM1]
          Length = 736

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 116/277 (41%), Gaps = 50/277 (18%)

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG----VLDRFSFETVLHALERATA 268
           IG  +  TG  +  + S AA  GG  VS  G+    G    V+ RF+    L AL R   
Sbjct: 444 IGGTNFGTGGDNIINLSIAAAQGGTAVS--GNLPSAGLNLGVIRRFAGVYTLGALARFLE 501

Query: 269 IRT----LAEPTLTAIS--------GQSASFTSGGQHLYKTVSSSTGAT----SVTTHDY 312
                  L+ P L  +         GQ+  F +G    + +  + +GAT    ++   D 
Sbjct: 502 TNADGNILSTPNLVTLDNEEAKIVVGQNVPFVTGS---FTSTGTGSGATNPFQTIERRDV 558

Query: 313 GVVLHFTPTVLSPGRIGLRIQTE--------VSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           G+ L   P +   G + + I  E        VS+ V    AG + + R    ++TV +  
Sbjct: 559 GITLRVKPQIGENGTVRMTIYQEASSVVNQNVSQGVADATAGLVTNKR--SIESTVVVND 616

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  +V+ GL++D  Q     +P L ++P +GALFR+    R ++ + +      ++P  M
Sbjct: 617 GDILVMGGLMQDQFQDNSSRVPGLGRLPGIGALFRSDNRTRTKSNLMV-----FLRPQVM 671

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           R            + + A   +R + I   ++ S+ E
Sbjct: 672 RS----------AESSNALSLDRYDLIRAQQQNSQPE 698


>gi|261414659|ref|YP_003248342.1| type II and III secretion system protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371115|gb|ACX73860.1| type II and III secretion system protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326330|gb|ADL25531.1| bacterial type II and III secretion system protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 487

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LA P ++ +    A    G +   + +  S G +S    + G+ L  TP V    RI L 
Sbjct: 288 LASPQVSTLDNTEAQVFMGDKVSIRVIDDS-GESSTKMVETGIKLTVTPHVSGDNRILLD 346

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +  E +    G +         ++A T V +  G T+V+ GL +++  + + GIP L  I
Sbjct: 347 LHPENNS--YGYDEKGEVVISTQEAKTKVVVADGETVVIGGLTRNENTESESGIPFLKDI 404

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P+LG LF+ SR +  + ++ I  TP +++
Sbjct: 405 PLLGNLFKYSRKSITKKDLVIFVTPRIIR 433


>gi|194367008|ref|YP_002029618.1| type IV pilus secretin PilQ [Stenotrophomonas maltophilia R551-3]
 gi|194349812|gb|ACF52935.1| type IV pilus secretin PilQ [Stenotrophomonas maltophilia R551-3]
          Length = 657

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 82/174 (47%), Gaps = 7/174 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-TGATSVTTHDY 312
           +  +  L A++  +    ++ P +   + + A+   G +  Y T+S   TG  +     +
Sbjct: 479 YLLDVELSAMQEESRGEVISNPRVVTTNQREATIKQGKEIGYVTISGGGTGGVATPNVQF 538

Query: 313 GVV---LHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
             V   L  TPT+ +  R+ L +Q    EV + +     G +PS   R+ +T V +  G 
Sbjct: 539 KEVVLELKVTPTITNDNRVFLNMQVKKDEVDQLIQLDGYGTVPSINRREVNTAVLVEDGQ 598

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           T+V+ G+ +   +     +P L  +P LG LF+    N+++ E+ +  TP +++
Sbjct: 599 TVVIGGVYEFTDRSSISKVPFLGDVPFLGNLFKKRGRNKDKAELLVFVTPKVLR 652


>gi|124385937|ref|YP_001027735.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|124293957|gb|ABN03226.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
          Length = 616

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 487 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 544

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+
Sbjct: 545 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 604

Query: 411 FIAATPFLV 419
            +  TP +V
Sbjct: 605 VVYITPTVV 613


>gi|312881261|ref|ZP_07741059.1| YscC/HrcC family type III secretion outer membrane protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309371153|gb|EFP98607.1| YscC/HrcC family type III secretion outer membrane protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 489

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 32/224 (14%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----AADFGGKFVSEGGDFSVK 248
           + + + VTI +V      Q+G   S      G S SF     ++D     +   G+F V+
Sbjct: 262 EMIEVSVTIIDVDTSDFNQLGIDWSAAAKIGGGSISFNQGSMSSDNFSTVIGNTGNFMVR 321

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--S 306
                      L+ALE+ +  + L+ P++  ++   A         Y  V     A   S
Sbjct: 322 -----------LNALEQNSKAKVLSRPSVVTLNNVQAVLDKN-VTFYTKVEGEKVAKLES 369

Query: 307 VTTHDYGVVLHFTPTVLSPG---RIGLRI------QTEVSEPVIGVNAGDMPSYRVRKAD 357
           VTT   G +L  TP +++     R+ L +      QT   +  IG N   +P     +  
Sbjct: 370 VTT---GSLLRVTPRIVNEKHHQRVMLSLNIQDGQQTGQQKKAIGTNDA-LPQVENSEIA 425

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           T   L +G +++L G ++D  + ++  IPLL  IP+LG LFR++
Sbjct: 426 TQATLKTGESLLLGGFVQDKNKTVENKIPLLGDIPLLGGLFRST 469


>gi|310779606|ref|YP_003967939.1| type II and III secretion system protein [Ilyobacter polytropus DSM
           2926]
 gi|309748929|gb|ADO83591.1| type II and III secretion system protein [Ilyobacter polytropus DSM
           2926]
          Length = 594

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 122/269 (45%), Gaps = 49/269 (18%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSS---GPSKSF----- 230
           +KK++  L++  + QV +   + +V+ ++ + +GF  +    G+S+   G S +F     
Sbjct: 280 AKKLIEDLDLP-QKQVRITAQVLDVKDNLFETLGFDWAYDSNGTSTYTDGTSGTFLGTST 338

Query: 231 ----------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                     A +F   F   GGD  V GV         ++ L+    +   A P++  +
Sbjct: 339 DVGIGTGYSSAIEFAQSF--NGGD-DVLGV--------SINMLQSDQDMIISAVPSVVVL 387

Query: 281 SGQSASFTSGGQHL--YKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIG----LRI 332
           +G+ A F++  + +  Y+      G T+ T    + G+V +  P + +    G    L +
Sbjct: 388 NGEEAEFSTTEEVIVGYEEEEDDDGNTTTTPMFEEAGLVFNVKPIIRTGADGGDTILLTL 447

Query: 333 QTEVSE-PVIGVNA-GDMPSYR-------VRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            TEVS   ++  +A  D  +Y         R  DTTV + SG ++ + G+ + D+  +  
Sbjct: 448 STEVSNFNLVSTSADSDATTYNEDGGSKASRNIDTTVSVKSGESLFIGGMKRADVSNVTS 507

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFI 412
            IPLL  +P +G LFRN     E  +I+I
Sbjct: 508 KIPLLGDLPFVGFLFRNEAVESELRDIYI 536


>gi|323491669|ref|ZP_08096847.1| MSHA biogenesis protein MshL [Vibrio brasiliensis LMG 20546]
 gi|323314031|gb|EGA67117.1| MSHA biogenesis protein MshL [Vibrio brasiliensis LMG 20546]
          Length = 551

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 20/190 (10%)

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---- 305
           V+   SFE VL  +     +  L+ P +TA + Q A    G    + T  S+   +    
Sbjct: 337 VISSGSFEAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDSYFVTDFSANTDSSSST 396

Query: 306 -------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ-------TEVSEPVIGVNAGDMP-- 349
                   +T    G+ L  TP +   G + L +         E  E   G N+  +P  
Sbjct: 397 TNTTTDIELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVTQEQKEINYGSNSLTLPLA 456

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +  +R++D+ +    G  +V+ GL+K +  +    +P L  +P LG LFRN+    ++TE
Sbjct: 457 TSSIRESDSVIRAQDGDVVVIGGLMKSNTVEQVSKVPFLGDVPALGHLFRNTSQLTQKTE 516

Query: 410 IFIAATPFLV 419
           + I   P +V
Sbjct: 517 LVILLKPSVV 526


>gi|76809042|ref|YP_335094.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710b]
 gi|76578495|gb|ABA47970.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710b]
          Length = 575

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 446 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 503

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+
Sbjct: 504 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 563

Query: 411 FIAATPFLV 419
            +  TP +V
Sbjct: 564 VVYITPTVV 572


>gi|94313628|ref|YP_586837.1| putative secretion type II protein [Cupriavidus metallidurans CH34]
 gi|93357480|gb|ABF11568.1| Putative secretion type II protein; gspD(secretin)-like protein
           [Cupriavidus metallidurans CH34]
          Length = 734

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 8/119 (6%)

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------YRV--RKADTTVEL 362
           D G+ L   P V     +G+++  EVS     + +G+  +      Y++  R A T++ L
Sbjct: 439 DVGIKLEVEPQVYRDNDVGIKLALEVSNITKTIQSGNAQTGLSSLAYQIGTRSASTSLRL 498

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             G T +L GL+ D  +   + +P L ++P++G LF +   +  +TEI +  TP +V+P
Sbjct: 499 RDGETQILGGLISDQDRTSADKVPGLGQLPVVGRLFSDHNGDHVKTEIVLQITPHIVRP 557


>gi|116074048|ref|ZP_01471310.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. RS9916]
 gi|116069353|gb|EAU75105.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. RS9916]
          Length = 670

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 30/184 (16%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YKTVSSSTGATSV--TTH 310
           SF   L A  ++T+ +TLA PTL    G+SA   +G   +   K   ++ G+T    T  
Sbjct: 472 SFYGYLEAAIQSTSAKTLASPTLLVQEGESAKVETGTSVITGVKATETANGSTQFENTRE 531

Query: 311 DYG---------------VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           + G               V L   P+V  P   G     +   P+  +    + S RVR 
Sbjct: 532 NAGLTLGVDIEKIDDNGFVTLKVFPSVSIPQEAGF----QEGVPIYNITGRSLSSGRVRL 587

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            D         T+VL G++++   ++    P+L  +P+LG +FR +   RE+ E+ I  T
Sbjct: 588 RDRQ-------TLVLTGVIRESDIEVVRKWPILGDLPVLGQMFRKTESEREKQELVILVT 640

Query: 416 PFLV 419
           P +V
Sbjct: 641 PSIV 644


>gi|257459465|ref|ZP_05624574.1| type II and III secretion system protein [Campylobacter gracilis
           RM3268]
 gi|257442890|gb|EEV18024.1| type II and III secretion system protein [Campylobacter gracilis
           RM3268]
          Length = 502

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 104/228 (45%), Gaps = 24/228 (10%)

Query: 212 QIGFQHSITGSSSGPSK--SFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           Q+GF   + G    P+K   +  D G  GK     G +++   L+ F+ + +++ LE   
Sbjct: 255 QLGFNTYVGGD---PTKLSGYHIDNGNRGKASDTHGTWTIGANLN-FNIDGLINFLETKG 310

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDY----GVVLHFT 319
             + ++ P +T ++ Q A  + G    Y   S++TG      + +   Y    G++L+  
Sbjct: 311 KTKIISSPKVTTMNNQPAIISVGDTINYVLKSTTTGDYQGGDTQSDDQYSIFVGILLNIL 370

Query: 320 PTVLSPGRIGLRIQTEVS-----EPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLA 371
           P +    RI LRI   +S     E  +    G     P    +K  + V +  G T++L 
Sbjct: 371 PEISDDNRIMLRINPSLSSLKYAEDNVRKENGRRDIAPDTLQKKLSSVVWVDDGDTVILG 430

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GL+     +    +P+L++IP++G LF+++      +E+    TP ++
Sbjct: 431 GLIGATKSKNNTRVPVLAEIPLIGNLFKSTADILSTSELIFVVTPHII 478


>gi|284007632|emb|CBA73278.1| type III secretion outer membrane protein YscC,HrcC,mxiD,InvG,SsaC
           [Arsenophonus nasoniae]
          Length = 488

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 115/270 (42%), Gaps = 30/270 (11%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL-------LNIAGEDQVTL 198
           VL  M +T  +   A + + +F +   +N    SS+K  M L       L+IA    + +
Sbjct: 209 VLKQMNQTNANGVNAQQDTTSFAADPRQNAVVVSSNKHDMGLYSTLIKQLDIA-PTMIEV 267

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----AADFGGKFVSEGGDFSVKGVLDR 253
            V+I +V      Q+G   S +    G + SF      +D     +   G+F V+     
Sbjct: 268 SVSIIDVDASDFNQLGIDWSASAKIGGGTISFNQGTSGSDNFSTVIGNTGNFMVR----- 322

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 L+ALE+ +  + L+ P++  ++   A          K            T   G
Sbjct: 323 ------LNALEKVSKAKILSRPSVVTLNNVQAVLDKNITFYTKLQGDKVAKLESVTA--G 374

Query: 314 VVLHFTPTVL-SPGR--IGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIV 369
            +L  TP ++ S GR  + L +  E  +    +N  + +P  +  +  T   L +G +++
Sbjct: 375 SLLRVTPRLIDSNGRKKVMLSLNIEDGQQTKAINDSEPLPQVQNSEIATQATLNTGESLL 434

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           L G ++D  Q ++  IPLL  +P++G LFR
Sbjct: 435 LGGFVQDKDQTVQNKIPLLGDLPLIGGLFR 464


>gi|262064162|gb|ACY07145.1| IV [Enterobacteria phage f1]
          Length = 426

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 18/196 (9%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S GG F   G+ +       + AL+  +  + L+ P +  +SGQ  S  S GQ++     
Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSI-SVGQNVPFITG 296

Query: 300 SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
             TG +        ++   + G+ +   P  ++ G I L I ++         A D+ + 
Sbjct: 297 RVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN 356

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R   TTV L  G T++L GL           +P LSKIP++G LF +   + EE+ ++
Sbjct: 357 Q-RSIATTVNLRDGQTLLLGGLTDYKNTSQDSDVPFLSKIPLIGLLFSSRSDSNEESTLY 415

Query: 412 IAATPFLVKPVAMRDL 427
           +     LVK   +R L
Sbjct: 416 V-----LVKATIVRAL 426


>gi|152978367|ref|YP_001343996.1| type IV pilus secretin PilQ [Actinobacillus succinogenes 130Z]
 gi|150840090|gb|ABR74061.1| type IV pilus secretin PilQ [Actinobacillus succinogenes 130Z]
          Length = 482

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 20/246 (8%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQ----------HSITGSSSGP-----SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +          H ++GS +       S +   +F    
Sbjct: 195 EQIAIEARIVTMNDESLKELGVRWGMFEPTAGAHKVSGSLAANGFTDISNNLNVNFATAT 254

Query: 239 VSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           +  G     V  +  R   +  L ALE+   +  +A P L   + ++AS   G +  Y  
Sbjct: 255 MPAGSVALQVAKINGRL-LDLELTALEQEKNVEIIASPRLLTTNKKAASIKQGTEIPYVV 313

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354
            +      SV   +  + L  TP +     I + +    + P   V+ G+   + S   +
Sbjct: 314 TNGKNDTQSVEFREAVLGLEVTPHISQNNAILMDLTVSQNSPGNRVSYGENSEVVSIDKQ 373

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  T V    G TIVL G+  D + +    +P+L  IP++  LF N    R++ E+ I  
Sbjct: 374 EIKTQVFAKDGETIVLGGVFHDTVTKGSNKVPVLGDIPVIKHLFGNHSERRQKRELVIFV 433

Query: 415 TPFLVK 420
           TP ++K
Sbjct: 434 TPRILK 439


>gi|71908829|ref|YP_286416.1| type II and III secretion system secretin [Dechloromonas aromatica
           RCB]
 gi|71848450|gb|AAZ47946.1| type II and III secretion system protein:NolW-like:Secretin/TonB,
           short N-terminal [Dechloromonas aromatica RCB]
          Length = 667

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 9/139 (6%)

Query: 297 TVSSSTG-ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRV- 353
           T +++ G + SV   D G+ L   P V     + +++  EVS  V  +    +  +Y++ 
Sbjct: 450 TATANVGVSASVNYLDVGLKLDVEPNVTLDDEVSIKVGLEVSSIVKEITGPSNSLAYQIG 509

Query: 354 -RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A TT+ L  G T VLAGL+ D+ ++    IP L +IP++G  F + +    +TEI +
Sbjct: 510 TRSASTTLRLKDGETQVLAGLISDEERKTTSHIPGLGEIPVVGRAFGSHKDTSTKTEIIL 569

Query: 413 AATPFLVKPVAMRDLSRPD 431
             TP +V     R++ RP+
Sbjct: 570 LITPRIV-----RNIHRPE 583


>gi|171911307|ref|ZP_02926777.1| putative general secretion pathway protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 821

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 105/266 (39%), Gaps = 61/266 (22%)

Query: 217 HSITGSSSGPSKSFAADFGGKFVS--------EGGDFSVKGVLDRFSFETVLHALERATA 268
           +S+T  +   S + AAD     +S          G F++ GV     F+  + AL +   
Sbjct: 519 YSVTSGNRSGSSAIAADSIDGLISGQSQASSVAPGVFTLAGVFTDPQFQVTIRALSQKKG 578

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKT------VSSSTGA------------------ 304
           +  ++ P++T  SGQ A+     + +Y T      +  + GA                  
Sbjct: 579 VDLMSAPSVTTRSGQRATVEVIREFIYPTEFDPPQIPQNFGATSSTSTTGTSSTSSFPVT 638

Query: 305 ----TSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAG------------- 346
               T+      GV L   P +   G  I L +  EV+E    +N G             
Sbjct: 639 PTTPTAFEMRPVGVRLEVDPVIGPDGYTIDLNLAPEVTEFEGFINYGSPINTASTDALGN 698

Query: 347 -----------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                      + P +  RK  T V +  G T+ + GL+++D+Q +++ +P+L  +P LG
Sbjct: 699 PTTVTLTENKIEQPVFSTRKVTTAVTVWDGQTVAMGGLIREDVQDVEDKVPILGDLPFLG 758

Query: 396 ALFRNSRFNREETEIFIAATPFLVKP 421
            LF++   +  +  + I  T  L+ P
Sbjct: 759 RLFQSKAEDHFKRNLMIFVTAKLIDP 784


>gi|32471490|ref|NP_864483.1| general secretory pathway protein D [Rhodopirellula baltica SH 1]
 gi|32443331|emb|CAD72164.1| similar to general secretory pathway protein D [Rhodopirellula
            baltica SH 1]
          Length = 1161

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%)

Query: 349  PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            P++     +TTV +P GGTI+L G+ +    + + G+P LSKIP +  LFRN+   RE  
Sbjct: 1075 PTFAFTTVNTTVSVPDGGTILLGGIKRMSEGRNERGVPFLSKIPYVSRLFRNTAVGRESR 1134

Query: 409  EIFIAATP 416
             + +  TP
Sbjct: 1135 SLMMMVTP 1142


>gi|313681848|ref|YP_004059586.1| pilus (msha type) biogenesis protein mshl [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154708|gb|ADR33386.1| pilus (MSHA type) biogenesis protein MshL [Sulfuricurvum kujiense
           DSM 16994]
          Length = 533

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------- 306
           S   V+  L+    + +++ P +  ++ Q A  T+G +  YKT SS++   +        
Sbjct: 325 SLNEVIKFLKTQGDVYSISNPKILTLNNQPALITAGTELFYKTKSSTSTTAASTTTSENE 384

Query: 307 -VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTV 360
            V++   GV+L  TP +   G I LRI   +SE    +N+ +      P    R+  + +
Sbjct: 385 IVSSVFSGVLLDITPEISKDGSITLRINPSISETASVINSSNEQRSMPPDLSRRQMSSVI 444

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  G  ++L GL+          +PLL  IP+LG LF+    N++
Sbjct: 445 SVQDGSRVILGGLINTKNVNDTNKVPLLGDIPVLGYLFKKEGLNKK 490


>gi|240079992|ref|ZP_04724535.1| PilQ [Neisseria gonorrhoeae FA19]
 gi|268596134|ref|ZP_06130301.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae FA19]
 gi|268549922|gb|EEZ44941.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae FA19]
          Length = 731

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 110/261 (42%), Gaps = 26/261 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K+++ L++  + QV ++  I E      + +G +   TG     +++ A  +G      
Sbjct: 465 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFR 523

Query: 242 GGD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           GGD                   S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPV- 340
            A   SG +  +   ++S G  S  T     VL  T  P +   G+I + ++     P  
Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-- 398
               +  +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF  
Sbjct: 644 CASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703

Query: 399 RNSRFNREETEIFIAATPFLV 419
           R  + +R E  IFI  TP ++
Sbjct: 704 RGKKTDRRELLIFI--TPRII 722


>gi|121634273|ref|YP_974518.1| pilus secretin [Neisseria meningitidis FAM18]
 gi|120865979|emb|CAM09716.1| pilus secretin [Neisseria meningitidis FAM18]
          Length = 589

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S + G +S  T     VL  T
Sbjct: 418 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 477

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 478 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 537

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           D       +PLL  IP++G LF  R  + +R E  IFI
Sbjct: 538 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 575


>gi|791156|gb|AAA65694.1| mannose-sensitive hemagglutinin D [Vibrio cholerae]
          Length = 559

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 21/197 (10%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           GG  +V  V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y T  SS
Sbjct: 341 GGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSS 398

Query: 302 ---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVN 344
              TG  +  + D        G+ L  TP +   G + L +   V E        +    
Sbjct: 399 VVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSE 458

Query: 345 AGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             ++P  R  +R++D+ +    G  +V+ GL+K +       +P L  +P LG LFRN+ 
Sbjct: 459 EIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTT 518

Query: 403 FNREETEIFIAATPFLV 419
              ++TE+ I   P +V
Sbjct: 519 KLTQKTELVILLKPTVV 535


>gi|332186824|ref|ZP_08388566.1| general secretion pathway protein D [Sphingomonas sp. S17]
 gi|332013157|gb|EGI55220.1| general secretion pathway protein D [Sphingomonas sp. S17]
          Length = 739

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 144/337 (42%), Gaps = 42/337 (12%)

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--SQSGRNQYANSSSKKV 184
           ++R I +   ++++  + V++  +V  + D Q A  L   FL  S SG    A++     
Sbjct: 368 IQRQIGEVIRQLDVRREQVLIEAIVAEVSD-QTARRLGAQFLLGSLSGGAFAASTYGNTA 426

Query: 185 MNLLNIAGE----------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
            N+L IAG                 D    +  +       L Q   Q SI G++ G   
Sbjct: 427 PNILQIAGAVGAQTLGGTRTIVTAPDGTRTETNVPNPAFSQLTQSAVQ-SILGTTGG--- 482

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
            FA  +GG+     GD     +++    +T  + L+    I TL      ++ GQ    T
Sbjct: 483 -FAG-WGGQV----GDTVFGAIINAVKSDTTSNLLQ-VPHIITLDNQQAHSLVGQEIPVT 535

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           +G Q L     ++    +V   + G+ L   P V + G + L ++ EVS     V++ + 
Sbjct: 536 TG-QALSNNFDNAF--RTVQRQNVGIQLDVKPQVNAGGSLKLYVRLEVSSIAGPVSSNNS 592

Query: 349 PSYRVRKADTTVELPSGGTI-VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
                ++A   V  P  G I V+ GLL D+ ++  E IPLL  IP LGALFR+   +R +
Sbjct: 593 ELILNKRAFENVFTPDDGQITVIGGLLDDNERRTIEKIPLLGDIPGLGALFRSKARSRSK 652

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           T + +      ++P  +R    P+D   V +    + 
Sbjct: 653 TNLMV-----FIRPTILRT---PEDSRRVTEQRYGYL 681


>gi|327538107|gb|EGF24796.1| protein containing Type II and III secretion system domain
            [Rhodopirellula baltica WH47]
          Length = 1062

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%)

Query: 349  PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            P++     +TTV +P GGTI+L G+ +    + + G+P LSKIP +  LFRN+   RE  
Sbjct: 976  PTFAFTTVNTTVSVPDGGTILLGGIKRMSEGRNERGVPFLSKIPYVSRLFRNTAVGRESR 1035

Query: 409  EIFIAATP 416
             + +  TP
Sbjct: 1036 SLMMMVTP 1043


>gi|238897391|ref|YP_002923068.1| type III outer membrane secretin precursor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465146|gb|ACQ66920.1| type III outer membrane secretin precursor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 496

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 23/215 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----AADFGGKFVSEGGDFSVKG 249
           ++ + V I +V    + Q+G     + S  G   SF     ++D GG     G DF V+ 
Sbjct: 270 EIEISVAIIDVDASDINQLGINWEASASLGGGKVSFNKGFISSDDGGFSTVVGNDFMVR- 328

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                     ++ALE+ +  R L+ P++  ++   A         + T         + +
Sbjct: 329 ----------INALEQHSKARVLSRPSIVTLNNIQAVLDKN--VTFYTKLQGDKVAKLDS 376

Query: 310 HDYGVVLHFTPTVLS-PGR----IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
              G ++  TP ++   G+    + L IQ     P I      +P     +  T   L  
Sbjct: 377 RTTGTLMQVTPRMIKDKGKEDVLLNLDIQDGQQRPSINNTTEILPQIDNSQITTQAVLKP 436

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           G  ++L G ++D  +  K  IPLL  IP++G LFR
Sbjct: 437 GQNLLLGGFIQDSQKASKHKIPLLGDIPLIGGLFR 471


>gi|166363715|ref|YP_001655988.1| type IV pilus assembly protein [Microcystis aeruginosa NIES-843]
 gi|166086088|dbj|BAG00796.1| type IV pilus assembly protein [Microcystis aeruginosa NIES-843]
          Length = 701

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 10/120 (8%)

Query: 311 DYGVV-LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT--VELPSGGT 367
           D G + L  +PTV SPG       T +     G+N+G+  +  +R+  T+  V L  G +
Sbjct: 564 DNGFISLSVSPTVASPG-------TPIEFNSGGINSGNTLTPLIRRELTSGLVRLRDGQS 616

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           ++L+G++++  Q  +  +P+L  IPILGALFR+       +E+ I  TP +++  A   L
Sbjct: 617 LILSGIIQETQQSSETKVPILGDIPILGALFRSRTNQNNRSEVIILLTPKIIEDTATSTL 676


>gi|71901990|ref|ZP_00684038.1| general secretory pathway protein D precursor [Xylella fastidiosa
           Ann-1]
 gi|71728245|gb|EAO30428.1| general secretory pathway protein D precursor [Xylella fastidiosa
           Ann-1]
          Length = 106

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+  T   + SG TI+LAGL+  +  +   G+P LSK+PI+G LF     N    EI + 
Sbjct: 12  RRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRREIIVL 71

Query: 414 ATPFLVK-PVAMRDLSRPDDHYSVEDDA 440
            TP +V+ P   R+L+   D YS + +A
Sbjct: 72  LTPEIVRNPQEARNLT---DEYSQKFNA 96


>gi|229512666|ref|ZP_04402135.1| MSHA biogenesis protein MshL [Vibrio cholerae TMA 21]
 gi|229350343|gb|EEO15294.1| MSHA biogenesis protein MshL [Vibrio cholerae TMA 21]
          Length = 559

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 106/261 (40%), Gaps = 38/261 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSE-------- 241
           QV L+  I EV      Q G   S   SS+G S    +     D  G  ++         
Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPGLDAI 336

Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
               GG  +V  V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y T
Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394

Query: 298 -VSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340
            +SS  G+           +T    G+ L  TP +   G + L +   V E        +
Sbjct: 395 DISSVVGSGDNAQASPSIKITPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454

Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 ++P  R  +R++D+ +    G  +V+ GL+K +       +P L  +P LG LF
Sbjct: 455 YRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RN+    ++TE+ I   P +V
Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535


>gi|297517403|ref|ZP_06935789.1| general secretory pathway component, cryptic [Escherichia coli
           OP50]
          Length = 503

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 90/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 242 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 301

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 302 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 352

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 353 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 412

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            PLL  IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 413 APLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 453


>gi|289525617|emb|CBJ15095.1| general secretion pathway protein D [Chlamydia trachomatis Sweden2]
          Length = 760

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%)

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +F+ +GG    KG++  + F      L     +R  A P++  ++ Q+ +  +  + +  
Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            VSS           YG+++   P +      G+  + ++T+++    G N  D P    
Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F+ 
Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689

Query: 414 ATP 416
            TP
Sbjct: 690 ITP 692


>gi|325206729|gb|ADZ02182.1| type IV pilus secretin PilQ [Neisseria meningitidis M04-240196]
          Length = 761

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S + G +S  T     VL  T
Sbjct: 590 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           D       +PLL  IP++G LF  R  + +R E  IFI
Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747


>gi|312882785|ref|ZP_07742519.1| type IV pilus assembly protein PilQ [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369569|gb|EFP97087.1| type IV pilus assembly protein PilQ [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 409

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 5/160 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV-LHF 318
           L AL++ +    ++ P L   + + A    G +  Y  + +++   +       V+ L  
Sbjct: 249 LSALQKESKAEVISNPKLLTTNKRPAYIEQGSEIPY--LEAASSGAASIAFKKAVLSLKV 306

Query: 319 TPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TP + S   + L +Q     P   I   +G   +   ++  T V +  G TIVL G+ + 
Sbjct: 307 TPKITSKNDLLLDLQVTQDRPGNPINTGSGQAVAIDTQRIGTQVLVKDGETIVLGGIFQH 366

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            +    + IPLL  +P+LGALFR +      +E+ I  TP
Sbjct: 367 SLSNAVDKIPLLGDVPLLGALFRRNYLQENRSELLIFVTP 406


>gi|167589893|ref|ZP_02382281.1| type II and III secretion system protein [Burkholderia ubonensis
           Bu]
          Length = 773

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 113/244 (46%), Gaps = 27/244 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           + +VTL V + EV  +    +G Q+        P K   +  GG    EGG  ++  +L 
Sbjct: 317 QSEVTLDVQVLEVNMNDSLDLGVQY--------PGKVQFSALGG---VEGGALTLGDLLR 365

Query: 252 ---DRFSFET-------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              DR    +        +  L++    +TLA P +   + + A+   G +    T +++
Sbjct: 366 LNRDRVGVASESGGLALAIDMLQKQGKTKTLANPKIRVRNMEKANIKIGERVPIVTTTNA 425

Query: 302 TG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRV--RKA 356
            G    SV+  D G++L   P +     + +++  EVS  +        + +Y +  R A
Sbjct: 426 NGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILSKETTKTGLVAYALGTRNA 485

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T +   +G T +LAGL+K +  +   G+P +S +P++G LF ++  + E TEI +  TP
Sbjct: 486 ETLMTAKNGETQILAGLVKRNESENIAGLPGMSGLPVIGRLFGSNGRSNERTEIVLLITP 545

Query: 417 FLVK 420
            + +
Sbjct: 546 HIER 549


>gi|171915159|ref|ZP_02930629.1| putative outer membrane protein (ComQ) [Verrucomicrobium spinosum
           DSM 4136]
          Length = 809

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 58/233 (24%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----- 297
           G F+V GV     F+ VL  L+++  +  LA PT+   SGQ A+ T   +  Y T     
Sbjct: 566 GFFAVSGVFTDPQFQVVLRGLKQSKGVDILAAPTVITKSGQRANVTVAKEFRYPTEFDPP 625

Query: 298 ---------------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRI-------- 328
                                ++ ST  T+    D G+ L   P V S  R         
Sbjct: 626 QIPQNLSANVNGVQYVANFAPITPST-PTAFEKRDVGITLEVEPVVGSGNRTVDLNLVPS 684

Query: 329 ----------GLRIQTEVSEPVIGVNAGDM----------PSYRVRKADTTVELPSGGTI 368
                     G  IQ   S PV G+   D+          P +R  K  T+V +  G T+
Sbjct: 685 SVEFEGFIDYGTDIQN--SAPV-GIGGADVFFNVPNDILQPIFRTNKITTSVSVWDGNTV 741

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           VL G+  +   ++ + +P++  +P++G  F++   N E   +    T  ++ P
Sbjct: 742 VLGGVTFEKRHKIDDKVPVVGDLPLVGRAFQSKVSNVERKNVLFFVTVRVIDP 794


>gi|15834670|ref|NP_296429.1| type III secretion protein SctC [Chlamydia muridarum Nigg]
 gi|7190084|gb|AAF38934.1| type III secretion protein SctC [Chlamydia muridarum Nigg]
          Length = 672

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +   D G
Sbjct: 452 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 511

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 512 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 570

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           ++D + ++  G+PLLS +P++  LF  +   R++  I I   P
Sbjct: 571 IRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKP 613


>gi|296159579|ref|ZP_06842403.1| type IV pilus secretin PilQ [Burkholderia sp. Ch1-1]
 gi|295890287|gb|EFG70081.1| type IV pilus secretin PilQ [Burkholderia sp. Ch1-1]
          Length = 585

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 14/111 (12%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL- 374
           L   P ++  GR+ L +  +V++  +G      P+   +   T VE+  GGT+ + G+  
Sbjct: 481 LEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRVEVEDGGTVSIGGIYA 538

Query: 375 ---KDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFLVK 420
              +DD+ Q    +PLL KIP+LGALFR+   R  R E  +FI  TP +V+
Sbjct: 539 TDDRDDVTQ----VPLLGKIPVLGALFRHRAHRDRRSELAVFI--TPRVVQ 583


>gi|89899353|ref|YP_521824.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89344090|gb|ABD68293.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 702

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 11/161 (6%)

Query: 282 GQSASFTSGGQHLYKTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           G++  F +G      T  +S    T+V   D G+ L   P +   G + + I  E S   
Sbjct: 495 GENVPFVTGSYTSNNTSGASVNPFTTVERKDVGLTLKVKPQINEDGTVKMVIYQETSAVK 554

Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            G     + P+   R  ++TV +  G  +VL GLL+D     ++ +P L  +P+ G LF+
Sbjct: 555 AGTEKDANGPTTSKRTIESTVLVDDGSIVVLGGLLQDKYSGNQDKVPGLGDVPLFGNLFK 614

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPD----DHYSV 436
           +    R +T + +      ++PV +RD    D    D Y +
Sbjct: 615 SEARTRNKTNLMV-----FLRPVVVRDAHASDQLSMDRYDL 650


>gi|307131917|ref|YP_003883933.1| general secretion pathway protein D [Dickeya dadantii 3937]
 gi|399825|sp|Q01565|GSPD2_DICD3 RecName: Full=General secretion pathway protein D; AltName:
           Full=Pectic enzymes secretion protein outD; Flags:
           Precursor
 gi|581156|emb|CAA46370.1| outD [Erwinia chrysanthemi]
 gi|306529446|gb|ADM99376.1| General secretion pathway protein D [Dickeya dadantii 3937]
          Length = 710

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 12/181 (6%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVT 308
           R ++  +L AL   +    LA P++  +    A+F  G +    T S +T A     +V 
Sbjct: 474 RGNWSMLLTALSSDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQTTSADNIFNTVE 533

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSG 365
               G+ L   P +     + L+I+ EVS   +     N+    ++  R  +  V + +G
Sbjct: 534 RKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSTNSSLGVTFNTRTVNNAVMVTNG 593

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T+V+ GLL     +  + +PLL  IP LG+LFR+     +  E+        ++P  +R
Sbjct: 594 ETVVVGGLLDKTSVESNDKVPLLGDIPWLGSLFRS-----KSQEVRKRNLMLFLRPTIIR 648

Query: 426 D 426
           D
Sbjct: 649 D 649


>gi|166154787|ref|YP_001654905.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu]
 gi|166155662|ref|YP_001653917.1| general secretion pathway protein D [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336062|ref|ZP_07224306.1| general secretion pathway protein D [Chlamydia trachomatis L2tet1]
 gi|165930775|emb|CAP04272.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu]
 gi|165931650|emb|CAP07226.1| general secretion pathway protein D [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 760

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%)

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +F+ +GG    KG++  + F      L     +R  A P++  ++ Q+ +  +  + +  
Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            VSS           YG+++   P +      G+  + ++T+++    G N  D P    
Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F+ 
Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689

Query: 414 ATP 416
            TP
Sbjct: 690 ITP 692


>gi|254673580|emb|CBA09077.1| fimbrial assembly protein [Neisseria meningitidis alpha275]
          Length = 687

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S + G +S  T     VL  T
Sbjct: 516 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 575

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 576 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 635

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           D       +PLL  IP++G LF  R  + +R E  IFI
Sbjct: 636 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 673


>gi|316984411|gb|EFV63384.1| type IV pilus secretin PilQ family protein [Neisseria meningitidis
           H44/76]
 gi|325200874|gb|ADY96329.1| type IV pilus secretin PilQ [Neisseria meningitidis H44/76]
          Length = 777

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S + G +S  T     VL  T
Sbjct: 606 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 665

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 666 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 725

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           D       +PLL  IP++G LF  R  + +R E  IFI
Sbjct: 726 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 763


>gi|253581772|ref|ZP_04858996.1| general secretion pathway protein D [Fusobacterium varium ATCC
           27725]
 gi|251836121|gb|EES64658.1| general secretion pathway protein D [Fusobacterium varium ATCC
           27725]
          Length = 563

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 18/184 (9%)

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYGVVLHFTPTVLSPGR 327
           A P++    G+   F    + +          T  TT+     + G++L   P +   G 
Sbjct: 370 AMPSILVADGEEGEFKITEEVIVGEEKKENDNTEKTTYTPLFREAGIILKVKPLIKENGT 429

Query: 328 IGLRIQTEVS---------EPVI---GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           I L++  EVS         E +I   G    +  S   R  +TTV++  G TI + GL +
Sbjct: 430 IFLKVMIEVSNFRLKKNEKENMISEGGTYNSEGGSKIGRSIETTVKMRDGETIFIGGLKR 489

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD-LSRPDDHY 434
             IQ L   +P L  +P++   F+N    +E T+I+I     + K    +D   + + H 
Sbjct: 490 AVIQNLDSQVPFLGTLPVINIFFKNQSVKKEITDIYIKLKVDIEKDTWEKDSFDKIELHQ 549

Query: 435 SVED 438
            ++D
Sbjct: 550 KIKD 553


>gi|171060459|ref|YP_001792808.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
 gi|170777904|gb|ACB36043.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
          Length = 596

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR--VRKADTTVELP 363
           SV   D G  L   P V + G + L I  E+S+    ++     +Y+  VR+A T++ L 
Sbjct: 359 SVQYIDVGFKLEVEPQVHADGDVDLDIDIELSQITQTLDTDSGVAYQLGVRQAQTSMRLR 418

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            G T  L GL++   +    G+P LS++P++G LF     +  +TE+ +A TP + +PV
Sbjct: 419 DGETQWLGGLIRRQERAAMSGLPGLSQLPVIGRLFGLESQDTADTELVLAVTPRIARPV 477


>gi|15678016|ref|NP_274809.1| pilQ protein [Neisseria meningitidis MC58]
 gi|62287061|sp|Q70M91|PILQ_NEIMB RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           Flags: Precursor
 gi|66731938|gb|AAY52170.1| pilQ protein [Neisseria meningitidis MC58]
 gi|325139633|gb|EGC62172.1| type IV pilus secretin PilQ [Neisseria meningitidis CU385]
          Length = 769

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S + G +S  T     VL  T
Sbjct: 598 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 657

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 658 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 717

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           D       +PLL  IP++G LF  R  + +R E  IFI
Sbjct: 718 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 755


>gi|330444063|ref|YP_004377049.1| type III secretion protein SctC [Chlamydophila pecorum E58]
 gi|328807173|gb|AEB41346.1| type III secretion protein SctC [Chlamydophila pecorum E58]
          Length = 908

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313
           +L AL++      +  P + A   Q ASF  G    Y+T S+    TG+ +  +   D G
Sbjct: 688 LLSALDQDGDTIIVLNPRIMAQDTQQASFFVGQNIPYQTTSTIIQETGSVTQNIEYEDIG 747

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T TV     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 748 VNLVVTSTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRMQVPDGCFLVMSGH 806

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++
Sbjct: 807 IRDKTTKIVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 852


>gi|284007407|emb|CBA72822.1| type III secretion outer membrane pore, YscC,HrcC,InvG
           [Arsenophonus nasoniae]
          Length = 539

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 30/244 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+I  +  + L V I ++ +  L Q+G + S  G+  G     + + G      
Sbjct: 284 RKIVEQLDIT-KRHIELSVWIIDIEKKALDQLGIKWS-GGAKIGQKLGVSLNAG------ 335

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                    +D  SF T + AL R      ++ P +       A F +      K +   
Sbjct: 336 ------TSTIDGASFMTAIFALTRNDKANIVSRPMVLTQENIPAIFDNNRTFYTKLIGER 389

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKAD 357
             AT +    YG  +   P      +I + I  E      G  AG     +P        
Sbjct: 390 --ATDLKNVTYGTAISVLPRFTINNQIEMMITVED-----GSRAGQITDHLPEIGRTNIS 442

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T   +P   ++++ G  +D+ + ++E IPLL  IP LG+LF   R+N E+ +  +    F
Sbjct: 443 TIARVPQNKSLLIGGYTRDEHRNIEEKIPLLGDIPYLGSLF---RYNIEKKDSLVRV--F 497

Query: 418 LVKP 421
           L++P
Sbjct: 498 LIQP 501


>gi|319409865|emb|CBY90178.1| type IV pilus secretin PilQ [Neisseria meningitidis WUE 2594]
          Length = 761

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S + G +S  T     VL  T
Sbjct: 590 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           D       +PLL  IP++G LF  R  + +R E  IFI
Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747


>gi|255311391|ref|ZP_05353961.1| general secretion pathway protein D [Chlamydia trachomatis 6276]
 gi|296436106|gb|ADH18280.1| general secretion pathway protein D [Chlamydia trachomatis G/9768]
 gi|296437034|gb|ADH19204.1| general secretion pathway protein D [Chlamydia trachomatis G/11222]
 gi|296437966|gb|ADH20127.1| general secretion pathway protein D [Chlamydia trachomatis G/11074]
 gi|297140467|gb|ADH97225.1| general secretion pathway protein D [Chlamydia trachomatis G/9301]
          Length = 760

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%)

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +F+ +GG    KG++  + F      L     +R  A P++  ++ Q+ +  +  + +  
Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            VSS           YG+++   P +      G+  + ++T+++    G N  D P    
Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F+ 
Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689

Query: 414 ATP 416
            TP
Sbjct: 690 ITP 692


>gi|325131459|gb|EGC54166.1| type IV pilus secretin PilQ [Neisseria meningitidis M6190]
 gi|325137566|gb|EGC60147.1| type IV pilus secretin PilQ [Neisseria meningitidis ES14902]
 gi|325197687|gb|ADY93143.1| type IV pilus secretin PilQ [Neisseria meningitidis G2136]
 gi|325201543|gb|ADY96997.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240149]
 gi|325207524|gb|ADZ02976.1| type IV pilus secretin PilQ [Neisseria meningitidis NZ-05/33]
          Length = 769

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S + G +S  T     VL  T
Sbjct: 598 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 657

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 658 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 717

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           D       +PLL  IP++G LF  R  + +R E  IFI
Sbjct: 718 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 755


>gi|308389910|gb|ADO32230.1| pilQ protein [Neisseria meningitidis alpha710]
          Length = 761

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S + G +S  T     VL  T
Sbjct: 590 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           D       +PLL  IP++G LF  R  + +R E  IFI
Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747


>gi|254804373|ref|YP_003082594.1| fimbrial assembly protein; pilus secretin [Neisseria meningitidis
           alpha14]
 gi|304388332|ref|ZP_07370446.1| type IV pilus secretin PilQ [Neisseria meningitidis ATCC 13091]
 gi|254667915|emb|CBA04080.1| fimbrial assembly protein; pilus secretin [Neisseria meningitidis
           alpha14]
 gi|254670030|emb|CBA04815.1| fimbrial assembly protein [Neisseria meningitidis alpha153]
 gi|261393150|emb|CAX50762.1| type IV pilus secretin PilQ [Neisseria meningitidis 8013]
 gi|304337694|gb|EFM03849.1| type IV pilus secretin PilQ [Neisseria meningitidis ATCC 13091]
 gi|325133588|gb|EGC56249.1| type IV pilus secretin PilQ [Neisseria meningitidis M13399]
 gi|325141680|gb|EGC64140.1| type IV pilus secretin PilQ [Neisseria meningitidis 961-5945]
          Length = 761

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S + G +S  T     VL  T
Sbjct: 590 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           D       +PLL  IP++G LF  R  + +R E  IFI
Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747


>gi|325143815|gb|EGC66131.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240013]
          Length = 801

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S + G +S  T     VL  T
Sbjct: 630 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 689

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 690 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 749

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           D       +PLL  IP++G LF  R  + +R E  IFI
Sbjct: 750 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 787


>gi|237803001|ref|YP_002888195.1| general secretion pathway protein D [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231274235|emb|CAX11029.1| general secretion pathway protein D [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 760

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%)

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +F+ +GG    KG++  + F      L     +R  A P++  ++ Q+ +  +  + +  
Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            VSS           YG+++   P +      G+  + ++T+++    G N  D P    
Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F+ 
Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689

Query: 414 ATP 416
            TP
Sbjct: 690 ITP 692


>gi|149200052|ref|ZP_01877077.1| ComE [Lentisphaera araneosa HTCC2155]
 gi|149136810|gb|EDM25238.1| ComE [Lentisphaera araneosa HTCC2155]
          Length = 813

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 112/282 (39%), Gaps = 55/282 (19%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------FAADFGGKFVSEGGDFSVK 248
           Q++++    +V  +  +++GF    TG  + P+ +      FA    G   +E  D +++
Sbjct: 515 QISVETKFIDVDFNTTQELGFMWRWTGPRT-PNHTLTGDRIFAQSNDGATAAERFDNNIR 573

Query: 249 G------------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           G                  V      + ++ AL+++     L+ P     SG +      
Sbjct: 574 GINEIVTSQEGPVQLAADLVFGNQELQMMVRALDQSDTSEVLSSPNAVTQSGNTVVLRVV 633

Query: 291 GQHL----YKTVSSSTGATSVTT------HDYGVVLHFTPTV----------LSPGRIGL 330
            +      ++       A   TT       D GV+L  TP V          L+P ++ L
Sbjct: 634 EERFLPEEWEEAQLDADAIIPTTPTFGEARDIGVILEVTPEVSADNNTISMDLNPQQVEL 693

Query: 331 R-IQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
               TE++  +                MP   +R+ +T  ++  G T+++ GL+K+ +  
Sbjct: 694 LGYDTELNSDLTNFTDSITYPNFFNYAMPIVSIRQVETRAQIWDGETLLIGGLVKETVYS 753

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           + + IP +S IP LG  F+N     E+T + I  T  L+ PV
Sbjct: 754 VDDSIPYVSDIPYLGRFFQNKGERSEKTNLLIFVTGRLISPV 795


>gi|325204768|gb|ADZ00222.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240355]
          Length = 761

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S + G +S  T     VL  T
Sbjct: 590 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           D       +PLL  IP++G LF  R  + +R E  IFI
Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747


>gi|325135596|gb|EGC58213.1| type IV pilus secretin PilQ [Neisseria meningitidis M0579]
          Length = 761

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S + G +S  T     VL  T
Sbjct: 590 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           D       +PLL  IP++G LF  R  + +R E  IFI
Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747


>gi|262380438|ref|ZP_06073592.1| general secretion pathway protein D [Acinetobacter radioresistens
           SH164]
 gi|262297884|gb|EEY85799.1| general secretion pathway protein D [Acinetobacter radioresistens
           SH164]
          Length = 718

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 5/176 (2%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           L  F  +  L AL+       ++ P +     Q A   SG Q  Y++ S   GA +V+T 
Sbjct: 541 LSDFMLDLELSALQADGYGEVISTPKVLTADKQQARVASGTQIPYQS-SEGGGANAVSTT 599

Query: 311 ---DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              D  + L+ TP++   G+I + +      P      G + +    + +T V + +G T
Sbjct: 600 EFVDATLSLNVTPSITPDGKIQMLLNITSDTPGNPTPTGQI-AINKNEINTNVLVNNGET 658

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +VL G+ + + +  +  +P+L  +P +G LFR    +  + E+ I  TP +V   A
Sbjct: 659 VVLGGIFEQETRNTQTKVPVLGDLPGVGRLFRRDAKSDNKRELLIFVTPRIVNDSA 714


>gi|255317692|ref|ZP_05358938.1| general secretion pathway protein D [Chlamydia trachomatis 6276s]
          Length = 760

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%)

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +F+ +GG    KG++  + F      L     +R  A P++  ++ Q+ +  +  + +  
Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            VSS           YG+++   P +      G+  + ++T+++    G N  D P    
Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F+ 
Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689

Query: 414 ATP 416
            TP
Sbjct: 690 ITP 692


>gi|115350365|ref|YP_772204.1| type IV pilus secretin PilQ [Burkholderia ambifaria AMMD]
 gi|115280353|gb|ABI85870.1| type IV pilus secretin PilQ [Burkholderia ambifaria AMMD]
          Length = 553

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 10/133 (7%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  IG      P+
Sbjct: 394 GSELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPA 451

Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
              +   T VE+ +GGT+ + G    L +DD+ +    +PLL KIP+LGALFR+     +
Sbjct: 452 IHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTR----VPLLGKIPVLGALFRHRARRDQ 507

Query: 407 ETEIFIAATPFLV 419
            +E+ +  TP +V
Sbjct: 508 RSELVVFITPTVV 520


>gi|76789309|ref|YP_328395.1| general secretion pathway protein D [Chlamydia trachomatis
           A/HAR-13]
 gi|76167839|gb|AAX50847.1| general secretion pathway protein D [Chlamydia trachomatis
           A/HAR-13]
          Length = 760

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%)

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +F+ +GG    KG++  + F      L     +R  A P++  ++ Q+ +  +  + +  
Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            VSS           YG+++   P +      G+  + ++T+++    G N  D P    
Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F+ 
Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689

Query: 414 ATP 416
            TP
Sbjct: 690 ITP 692


>gi|15605301|ref|NP_220087.1| general secretion pathway protein D [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3329013|gb|AAC68174.1| Gen. Secretion Protein D [Chlamydia trachomatis D/UW-3/CX]
 gi|297748702|gb|ADI51248.1| General secretion pathway protein D [Chlamydia trachomatis D-EC]
 gi|297749582|gb|ADI52260.1| General secretion pathway protein D [Chlamydia trachomatis D-LC]
          Length = 760

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%)

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +F+ +GG    KG++  + F      L     +R  A P++  ++ Q+ +  +  + +  
Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            VSS           YG+++   P +      G+  + ++T+++    G N  D P    
Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F+ 
Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689

Query: 414 ATP 416
            TP
Sbjct: 690 ITP 692


>gi|255507170|ref|ZP_05382809.1| general secretion pathway protein D [Chlamydia trachomatis
           D(s)2923]
 gi|296435178|gb|ADH17356.1| general secretion pathway protein D [Chlamydia trachomatis E/150]
 gi|296438898|gb|ADH21051.1| general secretion pathway protein D [Chlamydia trachomatis E/11023]
          Length = 760

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%)

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +F+ +GG    KG++  + F      L     +R  A P++  ++ Q+ +  +  + +  
Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            VSS           YG+++   P +      G+  + ++T+++    G N  D P    
Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F+ 
Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689

Query: 414 ATP 416
            TP
Sbjct: 690 ITP 692


>gi|323957549|gb|EGB53264.1| general secretion pathway protein D [Escherichia coli H263]
          Length = 615

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 9/157 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           L GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612


>gi|319956469|ref|YP_004167732.1| pilus (msha type) biogenesis protein mshl [Nitratifractor
           salsuginis DSM 16511]
 gi|319418873|gb|ADV45983.1| pilus (MSHA type) biogenesis protein MshL [Nitratifractor
           salsuginis DSM 16511]
          Length = 511

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 24/216 (11%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            +D G      G  F+  G L       VL  L+    +  ++ P +  ++ Q A  + G
Sbjct: 295 GSDIGDYLPGGGISFTFSGDLTE-----VLKFLKTQGDVTVVSSPRVMTLNNQPAMISVG 349

Query: 291 GQHLYK-TVSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            +  YK T ++  G +   T +         G++L  TP V   G I L+I   ++    
Sbjct: 350 QEIYYKLTTTNKVGGSDTATSENEEVKSVFAGILLDITPEVDERGMITLKINPSITALAN 409

Query: 342 GVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
             +A ++       P  + R+  + +++  G   +L GL+       +EG+P+L  IPIL
Sbjct: 410 EEDAKNLQGVRTMPPDIKRRQIASVIKIKDGDHAILGGLITRGHGTKEEGLPVLENIPIL 469

Query: 395 GALFRNSRFNREETEIFIAATPFLV---KPVAMRDL 427
           G  F+  +      E+ +  TP ++   + V ++DL
Sbjct: 470 GYAFKKEQKIDYTDELVLIITPHIIRNNRNVTLKDL 505


>gi|194097721|ref|YP_002000762.1| PilQ [Neisseria gonorrhoeae NCCP11945]
 gi|240124975|ref|ZP_04737861.1| PilQ [Neisseria gonorrhoeae SK-92-679]
 gi|240127489|ref|ZP_04740150.1| PilQ [Neisseria gonorrhoeae SK-93-1035]
 gi|254493004|ref|ZP_05106175.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae 1291]
 gi|268683559|ref|ZP_06150421.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae SK-92-679]
 gi|268685861|ref|ZP_06152723.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae SK-93-1035]
 gi|193933011|gb|ACF28835.1| PilQ [Neisseria gonorrhoeae NCCP11945]
 gi|226512044|gb|EEH61389.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae 1291]
 gi|268623843|gb|EEZ56243.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae SK-92-679]
 gi|268626145|gb|EEZ58545.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 731

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 111/261 (42%), Gaps = 26/261 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K+++ L++  + QV ++  I E      + +G +   TG     +++ A  +G      
Sbjct: 465 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523

Query: 242 GGD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           GGD                   S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   ++S G  S  T     VL  T  P +   G+I + ++     P  
Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643

Query: 342 GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-- 398
             +  + +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF  
Sbjct: 644 CASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703

Query: 399 RNSRFNREETEIFIAATPFLV 419
           R  + +R E  IFI  TP ++
Sbjct: 704 RGKKTDRRELLIFI--TPRII 722


>gi|307297353|ref|ZP_07577159.1| type II and III secretion system protein [Thermotogales bacterium
            mesG1.Ag.4.2]
 gi|306916613|gb|EFN46995.1| type II and III secretion system protein [Thermotogales bacterium
            mesG1.Ag.4.2]
          Length = 3898

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 9/158 (5%)

Query: 272  LAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTG-ATSVTTHDY---GVVLHFTPTVLSP 325
            ++ P++ ++SG+ A    G    +L +T+    G    + T +Y   GV L  TPTV   
Sbjct: 3742 ISSPSIVSMSGEEAKIHIGDTIPYLVRTIEYVEGNPVEIETIEYLNTGVELRITPTVNDD 3801

Query: 326  GRIGLRIQTEVSEPVIGVNAGDMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G+I L +  +VSEP   V+ G    Y  + R+A++ + +  G T+ + GL+ +       
Sbjct: 3802 GKILLDLFIKVSEPEKYVD-GTRTLYGEKTREANSRLIISDGNTLTIGGLVANKDTVTVN 3860

Query: 384  GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             +P LS +P +G LF       ++ E+ I  T  +V+P
Sbjct: 3861 KMPFLSDLPFIGKLFTTENKTSDKRELVIFITAEVVEP 3898


>gi|291297113|ref|YP_003508511.1| type II and III secretion system protein [Meiothermus ruber DSM
           1279]
 gi|290472072|gb|ADD29491.1| type II and III secretion system protein [Meiothermus ruber DSM
           1279]
          Length = 509

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 37/251 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGD--FSVKGVL 251
           QV L++ +  V  ++++ +G +  +++G           +    F+S G +  F     L
Sbjct: 276 QVQLQIRVQAVSGEVIRNLGIKWETVSG----------GNLIASFLSTGLNLIFDATRSL 325

Query: 252 DRFSFETVLHALERATAIRTLAEPT-------------LTAISGQSASFTSGGQHLYKTV 298
              +   VL ALE+    R L++               L A   + A    GG+ L    
Sbjct: 326 ASLNIRAVLDALEKQQLSRRLSDANVLVEDNYGADTSDLRATGAKGAEIKVGGRLLIPIT 385

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SYRVRKA 356
                  +V   DYG+++   P + + G I L + T+      G +  D P  S R+ + 
Sbjct: 386 IGD--QITVREFDYGLLVRVRPQISTDGNILLEVFTQT-----GGDPADGPAGSIRIPQQ 438

Query: 357 DTTVELP--SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            T  +L    G T+VL GL++      +  IPLL  IP+LG LF+    + ++ E+ +  
Sbjct: 439 STLSKLRIRDGQTVVLGGLIQKVTDTSETKIPLLGDIPLLGELFKQRTSSIKDDELIVII 498

Query: 415 TPFLVKPVAMR 425
           T  +VK  A R
Sbjct: 499 TGNIVKDSAQR 509


>gi|257470110|ref|ZP_05634202.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC
           49185]
          Length = 563

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 111/271 (40%), Gaps = 27/271 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEGGDFSVK---GV 250
           QV +   I +V  ++ + +GF    + S S   +K       GK   EG   S      +
Sbjct: 283 QVRITSQILDVTDNLFENLGFDWLYSNSGSIEKNKGLDISLIGKAAVEGAGVSFGSGINL 342

Query: 251 LDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           + +F+         ++ L+    +   A P++    G+   F    + +          T
Sbjct: 343 IRQFNDGNDILGLGINLLQATQDLVISAMPSILVADGEEGEFKITEEVIVGEEKKENDNT 402

Query: 306 SVTTH-----DYGVVLHFTPTVLSPGRIGLRIQTEVS--------EPVIGVNAGDMPSY- 351
             TT+     + G++L   P +   G I L++  EVS        +  I  + G   S  
Sbjct: 403 EKTTYTPLFREAGIILKVKPLIKENGIIFLKVMIEVSNFRLKKSEQENISSDGGTYNSEG 462

Query: 352 --RV-RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
             ++ R  +TTV++  G TI + GL +  +Q L   IP L  +P++   F+N    RE T
Sbjct: 463 GSKIGRSIETTVKMKDGETIFIGGLKRAVVQNLDSRIPFLGTLPVINIFFKNQSVKREIT 522

Query: 409 EIFIAATPFLVKPVAMRD-LSRPDDHYSVED 438
           +I+I     + K    +D   + + H  ++D
Sbjct: 523 DIYIKLKVDIEKDSWEKDSFDKTELHQKIKD 553


>gi|167587730|ref|ZP_02380118.1| type IV pilus secretin PilQ [Burkholderia ubonensis Bu]
          Length = 499

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 11/164 (6%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+      G + V      + L   
Sbjct: 310 LSALEAQGRGQIVSSPRVVTADRAKAIVEQGAELPYQ-AKVGNGVSGVQFRRATLKLEVE 368

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG----LLK 375
           P +   GR+ L +  +V++  +G      P+   +   T VE+  GGT+ + G    L +
Sbjct: 369 PQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVEDGGTVAIGGIYEQLRR 426

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           DD+ +    +PLL KIPILGALFR+     + +E+ +  TP +V
Sbjct: 427 DDVTR----VPLLGKIPILGALFRHRAQRDQRSELVVFITPTVV 466


>gi|237756260|ref|ZP_04584819.1| type IV pilus secretin PilQ [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691579|gb|EEP60628.1| type IV pilus secretin PilQ [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 602

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 24/247 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSKS---FAADFGGKF 238
           Q+ ++  I +V    LK +G Q               ITG  S    S   +A DF    
Sbjct: 356 QIAIEARIVQVSTSNLKDLGIQWGGRATNIDNNNTKIITGGGSTSIISGGRYAVDFPSSS 415

Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
            +  G F++    G L  F  +  L AL+     + L++P +  I G++A  + G +  Y
Sbjct: 416 ATFPGGFAIGFVFGGLQNF-LDVRLSALQSIGKSKILSKPQIVTIDGETAEISQGYEVPY 474

Query: 296 KTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            T  ++ G T  SV+     + L+ TP   + G I + +      P         P  + 
Sbjct: 475 TTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDLIITQDIPDFKNLILGNPPIQT 534

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET-EIFI 412
           +   + V    G  + + G+L+        G+P L  IPILG LF+  ++ +E+T E+ I
Sbjct: 535 KTVTSKVVAKDGSVVAIGGILEKTEDVKDSGVPGLMNIPILGYLFK-EKYQQEKTNELLI 593

Query: 413 AATPFLV 419
             +P +V
Sbjct: 594 FLSPKIV 600


>gi|172059384|ref|YP_001807036.1| type IV pilus secretin PilQ [Burkholderia ambifaria MC40-6]
 gi|171991901|gb|ACB62820.1| type IV pilus secretin PilQ [Burkholderia ambifaria MC40-6]
          Length = 553

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 10/133 (7%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  IG      P+
Sbjct: 394 GSELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPA 451

Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
              +   T VE+ +GGT+ + G    L +DD+ +    +PLL KIP+LGALFR+     +
Sbjct: 452 IHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTR----VPLLGKIPVLGALFRHRARRDQ 507

Query: 407 ETEIFIAATPFLV 419
            +E+ +  TP +V
Sbjct: 508 RSELVVFITPTVV 520


>gi|117926538|ref|YP_867155.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
 gi|117610294|gb|ABK45749.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
          Length = 830

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 30/192 (15%)

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------------- 304
           + + AL +    + L+ P + A++ Q+A        ++ TV +  G+             
Sbjct: 385 STVRALAKFGNTKVLSSPKIMALNNQTAVLKVVDNTVFFTVEAEAGSSANASGGTDTTAL 444

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGD---MPSYR 352
             T V T   G+V+  TP + +   + L ++         VS+P   +NAG    +P  +
Sbjct: 445 INTRVHTVPVGLVMSVTPQISADDVVTLNVRPTISSVSRWVSDPNPHLNAGVENLIPEIQ 504

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           V++ ++ + + SG   V+ GL++D I ++  G+PL+S++P +G LF        +TE+ I
Sbjct: 505 VKEMESILRVHSGQITVMGGLMQDKISKVDTGLPLISQVPGIGGLFGYKEKTVSKTELVI 564

Query: 413 AATPFLVKPVAM 424
                 ++PV M
Sbjct: 565 -----FMRPVVM 571


>gi|91785421|ref|YP_560627.1| putative fimbrial type-4 assembly signal peptide, PilQ-like
           [Burkholderia xenovorans LB400]
 gi|91689375|gb|ABE32575.1| Putative fimbrial type-4 assembly signal peptide, PilQ-like protein
           [Burkholderia xenovorans LB400]
          Length = 567

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 14/136 (10%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P ++  GR+ L +  +V++  +G      P+
Sbjct: 438 GTELPYQAKVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPA 495

Query: 351 YRVRKADTTVELPSGGTIVLAGLL----KDDIQQLKEGIPLLSKIPILGALFRNS--RFN 404
              +   T VE+  GGT+ + G+     +DD+ Q    +PLL KIP+LGALFR+   R  
Sbjct: 496 INTKHVQTRVEVEDGGTVSIGGIYATDDRDDVTQ----VPLLGKIPVLGALFRHRAHRDR 551

Query: 405 REETEIFIAATPFLVK 420
           R E  +FI  TP +V+
Sbjct: 552 RSELAVFI--TPRVVQ 565


>gi|59800555|ref|YP_207267.1| hypothetical protein NGO0094 [Neisseria gonorrhoeae FA 1090]
 gi|240117229|ref|ZP_04731291.1| hypothetical protein NgonPID_02009 [Neisseria gonorrhoeae PID1]
 gi|268602920|ref|ZP_06137087.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID1]
 gi|293397705|ref|ZP_06641911.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae F62]
 gi|62900657|sp|Q5FAD2|PILQ_NEIG1 RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           AltName: Full=Outer membrane protein omc; Flags:
           Precursor
 gi|59717450|gb|AAW88855.1| pilus secretion protein [Neisseria gonorrhoeae FA 1090]
 gi|268587051|gb|EEZ51727.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID1]
 gi|291611651|gb|EFF40720.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae F62]
          Length = 723

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 111/261 (42%), Gaps = 26/261 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K+++ L++  + QV ++  I E      + +G +   TG     +++ A  +G      
Sbjct: 457 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 515

Query: 242 GGD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           GGD                   S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 516 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 575

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   ++S G  S  T     VL  T  P +   G+I + ++     P  
Sbjct: 576 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 635

Query: 342 GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-- 398
             +  + +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF  
Sbjct: 636 CASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 695

Query: 399 RNSRFNREETEIFIAATPFLV 419
           R  + +R E  IFI  TP ++
Sbjct: 696 RGKKTDRRELLIFI--TPRII 714


>gi|237804923|ref|YP_002889077.1| general secretion pathway protein D [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273223|emb|CAX10136.1| general secretion pathway protein D [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 760

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%)

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +F+ +GG    KG++  + F      L     +R  A P++  ++ Q+ +  +  + +  
Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            VSS           YG+++   P +      G+  + ++T+++    G N  D P    
Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F+ 
Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMGSASDSQTEMFMF 689

Query: 414 ATP 416
            TP
Sbjct: 690 ITP 692


>gi|161869408|ref|YP_001598575.1| type IV pilus assembly protein PilQ [Neisseria meningitidis 053442]
 gi|218767605|ref|YP_002342117.1| pilus secretin [Neisseria meningitidis Z2491]
 gi|62287129|sp|Q9JVW4|PILQ_NEIMA RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           Flags: Precursor
 gi|121051613|emb|CAM07913.1| pilus secretin [Neisseria meningitidis Z2491]
 gi|161594961|gb|ABX72621.1| type IV pilus assembly protein PilQ [Neisseria meningitidis 053442]
 gi|325129552|gb|EGC52376.1| type IV pilus secretin PilQ [Neisseria meningitidis OX99.30304]
          Length = 761

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S + G +S  T     VL  T
Sbjct: 590 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           D       +PLL  IP++G LF  R  + +R E  IFI
Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747


>gi|220933412|ref|YP_002512311.1| general secretion pathway protein D [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994722|gb|ACL71324.1| general secretion pathway protein D [Thioalkalivibrio sp. HL-EbGR7]
          Length = 655

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 118/272 (43%), Gaps = 31/272 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-----SKSFAADFGG 236
           + V+N L++    QV ++  IAEV  D + ++G Q  +   +SG      ++S +   G 
Sbjct: 321 RAVINQLDVR-RAQVLVEAVIAEVSYDKITELGVQWGVGNPNSGVGVINFNRSGSGIIG- 378

Query: 237 KFVSEGGDFSVKGVLDR--------------FSFETVLHALERATA----IRTLAEPTLT 278
             V+ G D  ++G +                 S  T + AL RA A       L+ P+L 
Sbjct: 379 --VAGGIDAFLRGAVATPPNLGDGAFLGGIGTSGSTTIAALVRALAGDSSSNILSTPSLM 436

Query: 279 AISGQSASFTSGGQHLY---KTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +  + A    G    +   +++  S  A  ++   D GV L   P +     I L I+ 
Sbjct: 437 TMDNEEAEIVVGQNVPFIAGRSIEQSGQAFDTIQRQDVGVKLRIKPQINEGNSIRLEIEQ 496

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           EVS+   G  A        R   T V +  G  +VL GL+ D + Q ++ +P L  IP +
Sbjct: 497 EVSQVAAGATAAADLVTNKRSLRTIVMVDDGEMVVLGGLIDDVLVQTQDRVPGLGSIPGV 556

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           G LFR     +E+  + +   P +V+  A+++
Sbjct: 557 GRLFRYDTARKEKRNLMVFLHPVIVRDSAVQE 588


>gi|171318673|ref|ZP_02907818.1| type IV pilus secretin PilQ [Burkholderia ambifaria MEX-5]
 gi|171096140|gb|EDT41064.1| type IV pilus secretin PilQ [Burkholderia ambifaria MEX-5]
          Length = 553

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 10/133 (7%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  IG      P+
Sbjct: 394 GSELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPA 451

Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
              +   T VE+ +GGT+ + G    L +DD+ +    +PLL KIP+LGALFR+     +
Sbjct: 452 IHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTR----VPLLGKIPVLGALFRHRARRDQ 507

Query: 407 ETEIFIAATPFLV 419
            +E+ +  TP +V
Sbjct: 508 RSELVVFITPTVV 520


>gi|270284835|ref|ZP_06194229.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia muridarum Nigg]
 gi|270288864|ref|ZP_06195166.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia muridarum Weiss]
 gi|301336215|ref|ZP_07224417.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia muridarum MopnTet14]
          Length = 918

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +   D G
Sbjct: 698 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 757

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 758 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 816

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D + ++  G+PLLS +P++  LF  +   R++  I I   P ++
Sbjct: 817 IRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVI 862


>gi|149178109|ref|ZP_01856704.1| general secretion pathway protein D (Precursor) [Planctomyces maris
            DSM 8797]
 gi|148843029|gb|EDL57397.1| general secretion pathway protein D (Precursor) [Planctomyces maris
            DSM 8797]
          Length = 1307

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 23/232 (9%)

Query: 234  FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            FGG  +S   + SV  ++   + +  +H L R   IRT+   T     GQ     +G   
Sbjct: 1013 FGGLVLSASSE-SVSILIRALAAKRNVHVLSRPQ-IRTVDNVTAQIQVGQIVPVVNG--- 1067

Query: 294  LYKTVSSSTGATSVTTH-DYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGV--- 343
               +V++   A  V    + G++L  TP +   G I +  Q E S+      P+      
Sbjct: 1068 --VSVTAVGSANPVIQQSEAGIILTVTPRISPDGNIVMETQAEKSDFNGSSVPIFTDATT 1125

Query: 344  -NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             N  + P   + +  TTV +P+G T+VL G++ +    ++  +P L  IP++G  FR   
Sbjct: 1126 GNVVESPIKNITQVQTTVSVPNGQTVVLGGMITESDTTIERKVPWLGDIPLIGIPFRYDY 1185

Query: 403  FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
             +    E+ +  TP +++  A  +  +      VE +       +  +++GP
Sbjct: 1186 SSTRRKELLVFLTPRIIRNDADSEFIK-----QVESERIHLQVEKAEQMHGP 1232


>gi|255348953|ref|ZP_05380960.1| general secretion pathway protein D [Chlamydia trachomatis 70]
 gi|255503492|ref|ZP_05381882.1| general secretion pathway protein D [Chlamydia trachomatis 70s]
          Length = 760

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%)

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +F+ +GG    KG++  + F      L     +R  A P++  ++ Q+ +  +  + +  
Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            VSS           YG+++   P +      G+  + ++T+++    G N  D P    
Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPIINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F+ 
Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689

Query: 414 ATP 416
            TP
Sbjct: 690 ITP 692


>gi|240114943|ref|ZP_04729005.1| PilQ [Neisseria gonorrhoeae PID18]
 gi|240122781|ref|ZP_04735737.1| PilQ [Neisseria gonorrhoeae PID332]
 gi|260441241|ref|ZP_05795057.1| PilQ [Neisseria gonorrhoeae DGI2]
 gi|268600608|ref|ZP_06134775.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID18]
 gi|268681392|ref|ZP_06148254.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID332]
 gi|291044580|ref|ZP_06570289.1| type IV pilus assembly protein PilQ [Neisseria gonorrhoeae DGI2]
 gi|268584739|gb|EEZ49415.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID18]
 gi|268621676|gb|EEZ54076.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID332]
 gi|291011474|gb|EFE03470.1| type IV pilus assembly protein PilQ [Neisseria gonorrhoeae DGI2]
          Length = 731

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 111/261 (42%), Gaps = 26/261 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K+++ L++  + QV ++  I E      + +G +   TG     +++ A  +G      
Sbjct: 465 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523

Query: 242 GGD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           GGD                   S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   ++S G  S  T     VL  T  P +   G+I + ++     P  
Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643

Query: 342 GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-- 398
             +  + +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF  
Sbjct: 644 CASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703

Query: 399 RNSRFNREETEIFIAATPFLV 419
           R  + +R E  IFI  TP ++
Sbjct: 704 RGKKTDRRELLIFI--TPRII 722


>gi|189424346|ref|YP_001951523.1| general secretion pathway protein D [Geobacter lovleyi SZ]
 gi|189420605|gb|ACD95003.1| general secretion pathway protein D [Geobacter lovleyi SZ]
          Length = 648

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 96/216 (44%), Gaps = 21/216 (9%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYG 313
           +L ALE    +  L+ P +     + A    G    +K  SSST +T     SV   D G
Sbjct: 436 ILQALESEGMLNILSTPNILTTDNKEAEINVGENVPFK--SSSTQSTFGTTESVERKDIG 493

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLA 371
           + L   P V     I + +  E+S   +  + GD        R A T+V +    TIV+ 
Sbjct: 494 INLKIKPQVSEGDYIRMDLYQEIS--AVKSDKGDAVDLVTTKRSAKTSVVVKDNETIVIG 551

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL++D      + +PLL  IP LG  F+ +   R++T + I  TP +VK    RDL+   
Sbjct: 552 GLIQDTEDNTIQKVPLLGDIPGLGWFFKTTTKTRKKTNLLIMLTPQVVKDA--RDLA--- 606

Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEA-SEVEGQNYK 466
              S+ +  K   F    K +GP    +E+ G+  K
Sbjct: 607 ---SITESQKG-KFTEAAKEFGPLNVQNEISGKATK 638


>gi|190575670|ref|YP_001973515.1| putative type II/III pilus secretin [Stenotrophomonas maltophilia
           K279a]
 gi|190013592|emb|CAQ47227.1| putative type II/III pilus secretin [Stenotrophomonas maltophilia
           K279a]
          Length = 655

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 80/173 (46%), Gaps = 6/173 (3%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
           +  +  L A++  +    ++ P +   + + A    G +  Y T+S+  G  +     + 
Sbjct: 478 YLLDVELSAMQEESRGEVISNPRVVTTNQREALIKQGKEIGYVTISAGAGGVATPNVQFK 537

Query: 314 VV---LHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
            V   L  TPT+ +  R+ L +Q    EV   +     G +PS   R+ +T V +  G T
Sbjct: 538 EVVLELKVTPTITNDNRVFLNMQVKKDEVDRLIQLEGYGTVPSINRREVNTAVLVEDGQT 597

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +V+ G+ +   +     +P L  +P LG LF+    ++++ E+ +  TP +++
Sbjct: 598 VVIGGVYEFTDRNSISKVPFLGDVPFLGNLFKKRGRSKDKAELLVFVTPKVLR 650


>gi|239998226|ref|ZP_04718150.1| PilQ [Neisseria gonorrhoeae 35/02]
 gi|240112199|ref|ZP_04726689.1| PilQ [Neisseria gonorrhoeae MS11]
 gi|268594082|ref|ZP_06128249.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae 35/02]
 gi|268598258|ref|ZP_06132425.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae MS11]
 gi|268547471|gb|EEZ42889.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae 35/02]
 gi|268582389|gb|EEZ47065.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae MS11]
 gi|317163512|gb|ADV07053.1| PilQ [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 731

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 110/261 (42%), Gaps = 26/261 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K+++ L++  + QV ++  I E      + +G +   TG     +++ A  +G      
Sbjct: 465 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523

Query: 242 GGD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           GGD                   S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPV- 340
            A   SG +  +   ++S G  S  T     VL  T  P +   G+I + ++     P  
Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-- 398
               +  +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF  
Sbjct: 644 CASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703

Query: 399 RNSRFNREETEIFIAATPFLV 419
           R  + +R E  IFI  TP ++
Sbjct: 704 RGKKTDRRELLIFI--TPRII 722


>gi|291280567|ref|YP_003497401.1| hypothetical protein DEFDS_P017 [Deferribacter desulfuricans SSM1]
 gi|290755269|dbj|BAI81645.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 531

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           GVVL F P V     I L +   ++      E  +      +P   VR   +TV++ SG 
Sbjct: 416 GVVLQFLPKVTDDNNIVLNLGVTINRLDKMDEKSLNGIILQLPQTSVRAVSSTVKMKSGQ 475

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           TIV+ G+L D+  +++  +PL+  IPILG LF
Sbjct: 476 TIVIGGILSDNTNEIENKVPLVGDIPILGNLF 507


>gi|307731211|ref|YP_003908435.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1003]
 gi|307585746|gb|ADN59144.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1003]
          Length = 613

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 19/240 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFGGKFVSEGGDFS 246
           QV ++  I E      + +G + S+ G+S        SG       D   + ++ G D +
Sbjct: 377 QVLIEARIVEGEHGFSRNLGVRLSMAGTSADGSTRGLSGGKDGLVYDLSARPIA-GFDAA 435

Query: 247 VKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             G L  F+          L ALE     + ++ P +       A    G +  Y+    
Sbjct: 436 TAG-LTLFAAGATRLLNIELSALEAEGRGQVVSSPRVVTADRMKAVVEQGTELPYQA-KV 493

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G + V      + L   P ++  GR+ L +  +V++  +G      P+   +   T V
Sbjct: 494 GQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRV 551

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           E+  GGT+ + G+   D +     +P+L KIP+LGALFR+     + +E+ +  TP +V+
Sbjct: 552 EVEDGGTVSIGGIYATDGRDDVTRVPVLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 611


>gi|170700771|ref|ZP_02891764.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
 gi|170134335|gb|EDT02670.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
          Length = 244

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 10/108 (9%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG--- 372
           L   P +   GR+ L +  +V++  IG      P+   +   T VE+ +GGT+ + G   
Sbjct: 110 LEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYE 167

Query: 373 -LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L +DD+ +    +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 168 QLNRDDVTR----VPLLGKIPVLGALFRHRARRDQRSELVVFITPTVV 211


>gi|163802024|ref|ZP_02195920.1| putative type III secretion protein YscC [Vibrio sp. AND4]
 gi|159174165|gb|EDP58973.1| putative type III secretion protein YscC [Vibrio sp. AND4]
          Length = 623

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 13/217 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           + ++ + ++I ++  + L Q+G         G++S        D  G  V+ G   + K 
Sbjct: 291 QSRIEVALSIVDISANDLSQLGIDWRAGIGAGNNSVLDIKTTGDVAGGDVTLGSGQTFKS 350

Query: 250 VLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +LD  +   +L     LE   + + ++ PTL       A   +      K +   T A  
Sbjct: 351 LLDVTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLIGKETAALE 410

Query: 307 VTTHDYGVVLHFTPTVLSP-----GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             T  YG +L   P ++         I L +  E    +      D+PS R  +  T   
Sbjct: 411 EVT--YGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSIRKTEISTLAT 468

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           +  G ++++ G+ +D+I      +PLL  IP LGALF
Sbjct: 469 VKQGQSLLIGGVYRDEISHQLRKVPLLGDIPYLGALF 505


>gi|240013410|ref|ZP_04720323.1| PilQ [Neisseria gonorrhoeae DGI18]
 gi|240015851|ref|ZP_04722391.1| PilQ [Neisseria gonorrhoeae FA6140]
 gi|240120480|ref|ZP_04733442.1| PilQ [Neisseria gonorrhoeae PID24-1]
          Length = 731

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 110/261 (42%), Gaps = 26/261 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K+++ L++  + QV ++  I E      + +G +   TG     +++ A  +G      
Sbjct: 465 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523

Query: 242 GGD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           GGD                   S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPV- 340
            A   SG +  +   ++S G  S  T     VL  T  P +   G+I + ++     P  
Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-- 398
               +  +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF  
Sbjct: 644 CASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703

Query: 399 RNSRFNREETEIFIAATPFLV 419
           R  + +R E  IFI  TP ++
Sbjct: 704 RGKKTDRRELLIFI--TPRII 722


>gi|269302606|gb|ACZ32706.1| putative general secretion pathway protein D [Chlamydophila
           pneumoniae LPCoLN]
          Length = 754

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 18/189 (9%)

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           VSS           YG+++   P +      G+  + ++T+++    G N  D P    R
Sbjct: 566 VSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRR 625

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
                V +  G T+++ GL    +    +GIP L  IP +G LF  S  +   TE+F+  
Sbjct: 626 NITNKVRIADGETVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFI 685

Query: 415 TP-FLVKPVAMRDL-------SRP---DDHYSVEDDAKAFFFNRVNKI-YGPKEA---SE 459
           TP  L  PV  ++        SRP   +++Y     ++A       K+   P      S+
Sbjct: 686 TPKILENPVEQQERKEEALLSSRPGEREEYYQALAASEAAARAAHKKLEVFPASGVSLSQ 745

Query: 460 VEGQNYKGA 468
           VEGQ Y G 
Sbjct: 746 VEGQEYDGC 754


>gi|331654572|ref|ZP_08355572.1| general secretion pathway protein D [Escherichia coli M718]
 gi|331047954|gb|EGI20031.1| general secretion pathway protein D [Escherichia coli M718]
          Length = 615

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 9/157 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           L GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612


>gi|323946657|gb|EGB42679.1| general secretion pathway protein D [Escherichia coli H120]
          Length = 615

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 9/157 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           L GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612


>gi|152993261|ref|YP_001358982.1| general secretory pathway protein D [Sulfurovum sp. NBC37-1]
 gi|151425122|dbj|BAF72625.1| general secretory pathway protein D [Sulfurovum sp. NBC37-1]
          Length = 536

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 24/182 (13%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHF 318
           ++ ++ P +  ++ Q A  + G +  YK  S+S   T          SV +   G++L  
Sbjct: 348 VKAISSPRVMTLNNQPAMISVGKELFYKLKSTSALGTGNNANTAQGESVDSVFAGILLDI 407

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKA-DTTVELPSGGTIV 369
           TP + + G I L+I   +SE +  +         + DMP   +R+   + V++  G   +
Sbjct: 408 TPEIGNNGIITLKINPSISETIEDIQTQKNTVTGSRDMPPDLIRRQIASVVKVKDGEHAI 467

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRN-SRFNREETEIFIAATPFLV---KPVAMR 425
           L GL+          IPLL  IP+L   F++  + NR E E+ +  TP +V   K V ++
Sbjct: 468 LGGLITSSTGTKVNKIPLLGDIPLLEYAFKHEEKINRVE-ELVLIITPHIVKTSKSVTLK 526

Query: 426 DL 427
           DL
Sbjct: 527 DL 528


>gi|292493847|ref|YP_003529286.1| type IV pilus secretin PilQ [Nitrosococcus halophilus Nc4]
 gi|291582442|gb|ADE16899.1| type IV pilus secretin PilQ [Nitrosococcus halophilus Nc4]
          Length = 699

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           S Q+ +    G  +    ++S+GATSV+     + L   P +    RI + +   V++  
Sbjct: 557 SNQNEALIEQGTEIPFQQATSSGATSVSFKKAVLSLKVVPQITPDDRIIMDLT--VNKDS 614

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +G     +PS   R+  T V + +G T+VL G+ + +  +    +P L  +P +G LFR+
Sbjct: 615 VGQVFNGVPSIDTREVATQVLVDNGQTVVLGGIYEQEQNRASRRVPFLGDLPYVGTLFRD 674

Query: 401 SRFNREETEIFIAATPFLVK 420
                 + E+ I  TP ++K
Sbjct: 675 KSEVNNKDELLIFVTPKIIK 694


>gi|189424531|ref|YP_001951708.1| type II and III secretion system protein [Geobacter lovleyi SZ]
 gi|189420790|gb|ACD95188.1| type II and III secretion system protein [Geobacter lovleyi SZ]
          Length = 792

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVN-AGDMPSYRVRKADTTVELPS 364
           D GV ++  PT+     + +++  EVS     E V G + A  + +   R  DT + L  
Sbjct: 473 DVGVKVNAEPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTIGTRNLDTVLSLKD 532

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T V+ GL+       K+ I LL  IP++G L  NS+ + ++TE+ +A TP LV+ V +
Sbjct: 533 GETSVIGGLISHSNSDSKQKIFLLGDIPLIGPLLSNSKTDNDKTELILAITPRLVRGVTV 592


>gi|323941937|gb|EGB38116.1| general secretion pathway protein D [Escherichia coli E482]
          Length = 615

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 9/157 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           L GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612


>gi|297537658|ref|YP_003673427.1| type II and III secretion system protein [Methylotenera sp. 301]
 gi|297257005|gb|ADI28850.1| type II and III secretion system protein [Methylotenera sp. 301]
          Length = 838

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 142/334 (42%), Gaps = 56/334 (16%)

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
           L+  D   ++  ++  +   +I +   ++++V+       +D+  AV+L+E  ++    N
Sbjct: 290 LVNADAKQMQTMIKTMLKTKDIFIHEKTNSLVM-------RDTPEAVQLAEKLVAAQDLN 342

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSK 228
                             + +V L+V + EV    + +IG Q       S+T + S P+ 
Sbjct: 343 ------------------DPEVMLEVEVLEVLHSKMTEIGVQWPTQFGLSVTDAPSTPTT 384

Query: 229 SFAADFGGKF---------VSEGGDFSVKGVLDRFSFETVLHALERATA-IRTLAEPTLT 278
           +     GG           ++  G  ++ G   + +  ++L  +++       LA P + 
Sbjct: 385 TVG--LGGAIQTTTPPPVPLTLEGLRNITGSNIKVTPLSLLLTMKKDVGDTNLLASPRIR 442

Query: 279 AISGQSASFTSGGQHLYKTVSS---STGATSVTTH----DYGVVLHFTPTVLSPGRIGLR 331
               + A    G +    T S    STG   VT      D G+ L   P +   G + ++
Sbjct: 443 VRQHEKAKIMIGDRVPVITNSVTPVSTGTPVVTGSVQYLDVGLKLEVEPDIHIDGEVAIK 502

Query: 332 IQTEVSE---PVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
              EVS     V    +G + +Y++  R A T + L  G T VL GL+ D+ ++    +P
Sbjct: 503 TYLEVSNIANQVTNATSGTI-AYQIGTRNASTVLRLKDGETQVLGGLISDEDRKSASKVP 561

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  +PILG LF +   ++ +TEI +  TP +++
Sbjct: 562 GLGDLPILGRLFSSHNNSKTKTEIILFITPHIIR 595


>gi|332289551|ref|YP_004420403.1| putative outer membrane porin HofQ [Gallibacterium anatis UMN179]
 gi|330432447|gb|AEC17506.1| putative outer membrane porin HofQ [Gallibacterium anatis UMN179]
          Length = 380

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVTTHDYGVVLH 317
           L ALE+   +  +A P L   + + AS   G +  ++ +  +  +  T +   +  + L 
Sbjct: 194 LKALEQENNVEIIASPHLLTSNQRKASIKQGSEIPYVIEDDTERSSRTHIEFKEAVLGLE 253

Query: 318 FTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            TP VL  G I L   +    +   I   AG + +   ++  + V +  G T+VL G+  
Sbjct: 254 VTPQVLHQGVISLDLVVTQNSAGASIPYGAGQVVTIDKQEVQSQVLVRDGETVVLGGIFH 313

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           D I + +  +PLL  IP LG LF +     ++ E+ I  TP ++
Sbjct: 314 DLIGKGENKVPLLGDIPGLGKLFSSKSERHQKRELVIFITPRII 357


>gi|167840250|ref|ZP_02466934.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 303

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 142 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 198

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 199 LPMVVEEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 254

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P+LGALFR++      +E     TP +++P
Sbjct: 255 YKVDARSNTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 303


>gi|307720370|ref|YP_003891510.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978463|gb|ADN08498.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 504

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 35/197 (17%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---------------T 297
            FS       L     ++ ++ P +  ++ Q A    G Q  YK               T
Sbjct: 291 NFSTSNFFKYLNTFGDVKVMSNPKILTMNNQPAVVNVGQQLSYKYQTGSVTTTGGTAAGT 350

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348
            + S G+T +     G+ L+  P +     I + I      PV+   + D          
Sbjct: 351 NTFSLGSTFI-----GITLYVIPEITDSNEILMSIN-----PVVSSLSADNTPTTSIREI 400

Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P  ++++  + V++ +G  +++ GL+     +  + IP+L  IPIL  +FR +   +  
Sbjct: 401 PPDTKIKQMTSVVKVKNGQKVLIGGLISATKGKDSKKIPILGDIPILSTIFRYTNNKKSR 460

Query: 408 TEIFIAATPFLVKPVAM 424
           TE+FI  TP +VK  +M
Sbjct: 461 TEMFILITPKIVKNSSM 477


>gi|317064333|ref|ZP_07928818.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC
           49185]
 gi|313690009|gb|EFS26844.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC
           49185]
          Length = 451

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 18/184 (9%)

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYGVVLHFTPTVLSPGR 327
           A P++    G+   F    + +          T  TT+     + G++L   P +   G 
Sbjct: 258 AMPSILVADGEEGEFKITEEVIVGEEKKENDNTEKTTYTPLFREAGIILKVKPLIKENGI 317

Query: 328 IGLRIQTEVS--------EPVIGVNAGDMPSY---RV-RKADTTVELPSGGTIVLAGLLK 375
           I L++  EVS        +  I  + G   S    ++ R  +TTV++  G TI + GL +
Sbjct: 318 IFLKVMIEVSNFRLKKSEQENISSDGGTYNSEGGSKIGRSIETTVKMKDGETIFIGGLKR 377

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD-LSRPDDHY 434
             +Q L   IP L  +P++   F+N    RE T+I+I     + K    +D   + + H 
Sbjct: 378 AVVQNLDSRIPFLGTLPVINIFFKNQSVKREITDIYIKLKVDIEKDSWEKDSFDKTELHQ 437

Query: 435 SVED 438
            ++D
Sbjct: 438 KIKD 441


>gi|195952904|ref|YP_002121194.1| type II and III secretion system protein [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932516|gb|ACG57216.1| type II and III secretion system protein [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 653

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 14/176 (7%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G F V G      FE  + ALE     +++ + TL A++ Q  S T G ++ + T+S+  
Sbjct: 483 GKFHVLG------FE--IQALESINKAKSVFKSTLLAMNDQPTSLTQGIEYPFTTISTPG 534

Query: 303 GAT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            A  +VT  +    +  TP VL  G+I L I  + +  +  + A   P+        ++ 
Sbjct: 535 QAVPTVTLQNVLNSIKVTPQVLPNGKILLNINIQ-NMSLGPLAANGQPTINQNSNSLSIV 593

Query: 362 LPSGGTIVLAGL-LKDDIQQLKEGIPLLSKIPILG--ALFRNSRFNREETEIFIAA 414
           L  G T+ + G+ LK++   L +GIP L K+PI+G   + +N   N     IFI A
Sbjct: 594 LSDGATLAIGGVGLKNESNGL-QGIPGLDKVPIIGNVGMTKNESKNNTNLFIFITA 648


>gi|297539729|ref|YP_003675498.1| type IV pilus secretin PilQ [Methylotenera sp. 301]
 gi|297259076|gb|ADI30921.1| type IV pilus secretin PilQ [Methylotenera sp. 301]
          Length = 728

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E     + ++ P +T  +   A   +G +  Y   SSS GA +V+     + L  T
Sbjct: 565 LTAMESDGHGKIVSSPRVTTANQHKAKIAAGTEIPYLEASSS-GAATVSFKSAVLSLEVT 623

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +    +I + +  +V +  +G     +PS   +  +T V + +G T VL G+ +  ++
Sbjct: 624 PQITPDDKIIMEL--DVKKDRVGQVFSGVPSIETQNINTQVLVGNGETAVLGGIFEQTVR 681

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              E +P    +PI+G LF+      ++ E+ I  TP
Sbjct: 682 NDVEKVPFFGDLPIMGNLFKKRTTQNDKQELLIFITP 718


>gi|115351491|ref|YP_773330.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
 gi|115281479|gb|ABI86996.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
          Length = 812

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 110/242 (45%), Gaps = 27/242 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           + +VTL V + EV  +    +G Q+        P K      GG    EGG  ++  +L 
Sbjct: 323 QSEVTLDVQVLEVNMNDSLDLGVQY--------PGKIQFNALGG---VEGGALTLGDLLR 371

Query: 252 ---DRFSFET-------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              DR    +        +  L++    +TLA P +   + + A+   G +    T +++
Sbjct: 372 LNRDRVGVSSESGGLALAIDLLQKQGKTKTLANPKIRVRNMEKANIKIGERVPIVTTTNA 431

Query: 302 TGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRV--RKA 356
            G    SV+  D G++L   P +     + +++  EVS  +        + +Y +  R A
Sbjct: 432 NGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILTKETTKTGLVAYSLGTRNA 491

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T +   +G T +LAGL+K +      G+P +S +P+LG LF ++  + E +EI +  TP
Sbjct: 492 ETLMTAKNGETQILAGLVKRNESDSVAGLPGVSGLPVLGRLFGSNGRSNERSEIVLLITP 551

Query: 417 FL 418
            +
Sbjct: 552 HI 553


>gi|187925571|ref|YP_001897213.1| type IV pilus secretin PilQ [Burkholderia phytofirmans PsJN]
 gi|187716765|gb|ACD17989.1| type IV pilus secretin PilQ [Burkholderia phytofirmans PsJN]
          Length = 591

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 2/130 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P ++  GR+ L +  +V++  +G      P+
Sbjct: 462 GTELPYQAKVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPA 519

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+  GGT+ + G+   D +     +P+L KIP+LGALFR+     + +E+
Sbjct: 520 INTKHVQTRVEVEDGGTVSIGGIYATDDRDDVTRVPVLGKIPVLGALFRHRAHRDQRSEL 579

Query: 411 FIAATPFLVK 420
            +  TP +V+
Sbjct: 580 AVFITPRVVQ 589


>gi|40644697|emb|CAD91899.1| secretin precursor [Neisseria meningitidis serogroup B]
          Length = 761

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S + G +S  T     VL  T
Sbjct: 590 LSASESLSKPKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           D       +PLL  IP++G LF  R  + +R E  IFI
Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747


>gi|330719673|gb|EGG98224.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC2047]
          Length = 419

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 23/206 (11%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-- 297
           S GG FS    L+   F  ++  L    +++ L+ P ++ ++ Q A    G    + T  
Sbjct: 200 SVGGVFS--AALNLKDFNALIDLLSTQGSVQVLSSPRISTVNNQKAVIKVGTDEFFVTEI 257

Query: 298 --------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGV 343
                    S+++    +T    G+ L  TP +   G + L I   VSE       V+G 
Sbjct: 258 SSETTTNTSSTTSTDVELTPFFSGIALDVTPQISEEGEVVLHIHPTVSEVTDQTKTVVGP 317

Query: 344 NAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           N GD+        +R+ D+ V   +G  +V+ GL+++         P L  +P+LG  FR
Sbjct: 318 N-GDLVLPLALSSIRETDSIVRARNGQVVVIGGLMQNSSTDNNAKTPFLGDLPLLGNAFR 376

Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
             R +  ++E+ I   P +    A R
Sbjct: 377 QKRQSSVKSELVILLKPIIADDDAWR 402


>gi|291333680|gb|ADD93369.1| type II and III secretion system protein [uncultured marine
           bacterium MedDCM-OCT-S01-C143]
          Length = 437

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIV 369
           D  + L  TP V    ++ L I  ++ E V G++ A   P    R A T V +    TIV
Sbjct: 215 DVSLKLTLTPHVNERNKVRLDIDQQI-EDVAGIDEATGQPITAKRSAKTVVVVDDQQTIV 273

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GL++D + + +  IP+L  +P++G +FR    + E+  + +  TP++V+  + +D  R
Sbjct: 274 LGGLIRDRVSEGESKIPVLGDLPLIGWMFRQHTKDVEKVNLLLVLTPYVVR--SQQDFQR 331


>gi|224373284|ref|YP_002607656.1| general secretory pathway protein D [Nautilia profundicola AmH]
 gi|223589728|gb|ACM93464.1| general secretory pathway protein D [Nautilia profundicola AmH]
          Length = 445

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 16/190 (8%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------AT 305
           FS   +L+ L +   + +L+ P +  ++ Q A  + G    YK  S  T           
Sbjct: 250 FSVVGLLNFLAQNGNVNSLSNPKVVTLNNQKAIISVGDTIYYKYASKVTTDQNGNPNTEY 309

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMP-SYRVRKADTTV 360
           ++ +   GVVL  TP +   G I L I   +S       +     DMP   +     + V
Sbjct: 310 TIDSKFVGVVLDITPQISDNGDIILSIAPRISAFKDLTQLSNTTRDMPPDTKDNTMLSVV 369

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV- 419
           +L    T+VL GL+ +D      G+P+L +IP++  LF +        E+    TP ++ 
Sbjct: 370 KLKDNQTLVLGGLITNDKTLQVNGVPVLKEIPLIKYLFSSREEVTSRKELVFVITPHIIN 429

Query: 420 --KPVAMRDL 427
             K   +RDL
Sbjct: 430 LKKKKTLRDL 439


>gi|223938688|ref|ZP_03630578.1| type II and III secretion system protein [bacterium Ellin514]
 gi|223892676|gb|EEF59147.1| type II and III secretion system protein [bacterium Ellin514]
          Length = 785

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 30/253 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIG---FQHSITGSS---------SGPSKSFAADFGGKFVSEG 242
           QV ++  I EV  D  + +G    Q S +G++         +GP  SF+ +F     +  
Sbjct: 493 QVLIEAIIMEVTLDDTRDLGVSYLQTSPSGNNYFQGIGAIKNGPFASFS-NFASTATNAA 551

Query: 243 GDF-SVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
               S    L +F+  F   + A      I  L+ P +      +A+   G    Y T +
Sbjct: 552 NSLPSGFSYLAQFNNDFSATITAAATDNRINVLSRPRIQTSHAVTANLQIGDTVPYVTGT 611

Query: 300 SSTGATSVTTHDY-----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSY 351
              G     +  Y     G+ L  TP +   G + + I  +V +   P I ++   +P+ 
Sbjct: 612 YFGGLNGQASSQYQQTFVGINLQVTPLINPDGLVVMDITQDVQQLGTPTI-IDNNPVPTT 670

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R A   V +    TI+L G +     + K G+PLL  IP+LG LFR++  + + TE+ 
Sbjct: 671 TKRTAQAKVSVKDRDTIILGGFISSTKSRSKSGVPLLMNIPVLGYLFRSTSDSNKRTELI 730

Query: 412 IAATPFLVKPVAM 424
           +     L++P  +
Sbjct: 731 V-----LIRPTVL 738


>gi|182412463|ref|YP_001817529.1| type II and III secretion system protein [Opitutus terrae PB90-1]
 gi|177839677|gb|ACB73929.1| type II and III secretion system protein [Opitutus terrae PB90-1]
          Length = 596

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 12/155 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH-----LYKTVSSSTGATSVTTH 310
           F  V+ AL   T  + ++ PT+  ++   A    G ++      Y     S      T  
Sbjct: 365 FGLVISALNELTTAKVVSNPTVVTLNNTEAFINIGKEYPIPNYTYNEQRGSFEVAGFTYK 424

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PVIGVNAGDMPSYRVRKADTTVELP 363
             G++L  TP V + G I L I+ EVS           G     +P  + +KA T + L 
Sbjct: 425 PIGIILKVTPQVNARGFIKLMIEPEVSSFNDADSVNFGGATGARIPVIQTKKARTQISLK 484

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            G T+ + GL+   +      +P+L  IP+LG LF
Sbjct: 485 DGFTMGIGGLIDSQVSNGSTKVPVLGSIPVLGRLF 519


>gi|325922269|ref|ZP_08184050.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325547222|gb|EGD18295.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 620

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 84/174 (48%), Gaps = 7/174 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTT 309
           F+ +  L A++       ++ P +   + +      G +  Y T+++++G      +V  
Sbjct: 441 FALDMELSAMQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTITAASGGGQSQANVQF 500

Query: 310 HDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +  + L  TPT+ +  R+ L +   + EV+  ++    G +P    R+ +T V +  G 
Sbjct: 501 KEVLLELKVTPTITNDNRVFLNMNVKKDEVARFIVLDGYGTVPEINRREVNTAVLVGDGE 560

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           T+V+ G+ +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 561 TVVIGGVYEFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 614


>gi|282896843|ref|ZP_06304849.1| pilQ(type II and III secretion system protein) [Raphidiopsis
           brookii D9]
 gi|281198252|gb|EFA73142.1| pilQ(type II and III secretion system protein) [Raphidiopsis
           brookii D9]
          Length = 522

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 43/61 (70%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T++L+G+++D  + +   +PLLS IP+LGALFR+++ +RE  E+ +  TP ++
Sbjct: 459 IRLRDGQTLLLSGIIQDQDRSVVTKVPLLSDIPLLGALFRSTKKDRERREVIVLLTPRII 518

Query: 420 K 420
           +
Sbjct: 519 E 519


>gi|117620160|ref|YP_855102.1| general secretion pathway protein D [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561567|gb|ABK38515.1| general secretion pathway protein D [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 677

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 31/189 (16%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--------------HLYKTVSS 300
           ++  ++ AL   T    L+ P++  +  + ASF  G +               ++ T+  
Sbjct: 429 NWAALVTALSTNTKNDILSTPSIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIER 488

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKAD 357
            T          G  L  TP +     + L I+ EVS        G     P++  R   
Sbjct: 489 KT---------VGTKLVVTPQINEGDSVLLNIEQEVSSVAQTQAPGTSTLGPTFDTRTIK 539

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             V + SG T+VL GL+ +  Q+    +PLL  IP+LG LFR++  +  +  + +     
Sbjct: 540 NAVLVKSGETVVLGGLMDEKTQEKVSKVPLLGDIPVLGYLFRSTSNSTSKRNLMV----- 594

Query: 418 LVKPVAMRD 426
            ++P  +RD
Sbjct: 595 FIRPTILRD 603


>gi|206558684|ref|YP_002229444.1| putative type IV pilus secretin [Burkholderia cenocepacia J2315]
 gi|198034721|emb|CAR50588.1| putative type IV pilus secretin [Burkholderia cenocepacia J2315]
          Length = 541

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 104/247 (42%), Gaps = 30/247 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAAD-----------FGGKFVS 240
           QV ++  I E  +   + +G + ++      PS    SF AD            GG   +
Sbjct: 274 QVRIEARIVEGEQGFSRNLGARVALRAQGRPPSAEGTSFTADARNALDLAARPLGGFDAA 333

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             G       L R   +  L ALE     + ++ P +       A    G +  Y+    
Sbjct: 334 TAGFTLFAAPLSRV-LDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ-AKV 391

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T V
Sbjct: 392 GNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRV 449

Query: 361 ELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRN--SRFNREETEIFIAA 414
           E+ +GGT+ + G    L ++D+ +    +PLL KIPILGALFR+   R  R E  +FI  
Sbjct: 450 EVENGGTVAIGGIYEQLNRNDVTR----VPLLGKIPILGALFRHRAQRDQRNELVVFI-- 503

Query: 415 TPFLVKP 421
           TP +V P
Sbjct: 504 TPTVVDP 510


>gi|168701297|ref|ZP_02733574.1| hypothetical protein GobsU_17361 [Gemmata obscuriglobus UQM 2246]
          Length = 1374

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%)

Query: 349  PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            PS+ +    TTV  P GGT++L GL +    + + G P LSKIP L  LF+N    RE T
Sbjct: 1286 PSFTLLDIQTTVVCPDGGTVLLGGLKRLSESRNEFGPPFLSKIPYLNRLFKNVGVGRETT 1345

Query: 409  EIFIAATPFLV 419
             + I  TP ++
Sbjct: 1346 HLMIMVTPRII 1356


>gi|108759429|ref|YP_633909.1| type IV pilus secretin PilQ [Myxococcus xanthus DK 1622]
 gi|108463309|gb|ABF88494.1| type IV pilus secretin PilQ [Myxococcus xanthus DK 1622]
          Length = 901

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 7/163 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLH 317
           L A E   +++T++ P +T +   +A  + G    +    S T A  V T   +  + L 
Sbjct: 734 LSAAENEGSVKTISAPKVTTLDNNTARISQGVSIPF----SQTSAQGVNTTFVEARLSLE 789

Query: 318 FTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            TP +   G + + I    ++P      A   PS + ++A+T V +  G T V+ G+   
Sbjct: 790 VTPHITQDGSVLMSINASNNQPDPSSTGANGQPSIQRKEANTQVLVKDGDTTVIGGIYVR 849

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                   +P LS+IP+LG LF+N+       E+ I  TP ++
Sbjct: 850 RGATQVNSVPFLSRIPVLGLLFKNNSETDTRQELLIFITPRIL 892


>gi|189351753|ref|YP_001947381.1| type IV pilus assembly protein [Burkholderia multivorans ATCC
           17616]
 gi|189335775|dbj|BAG44845.1| type IV pilus assembly protein [Burkholderia multivorans ATCC
           17616]
          Length = 528

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 2/137 (1%)

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           ++ +    G  L        G T V      + L   P +   GR+ L +  +V++  +G
Sbjct: 361 RAKALVEQGAELPYQAKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVG 418

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                 P+   +   T VE+  GGT+ + G+ +   +     +PLL KIP+LGALFR+  
Sbjct: 419 EPTAAGPAIHTKHVQTRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRA 478

Query: 403 FNREETEIFIAATPFLV 419
              + +E+ +  TP +V
Sbjct: 479 QREQRSELVVFITPTIV 495


>gi|323527558|ref|YP_004229711.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1001]
 gi|323384560|gb|ADX56651.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1001]
          Length = 576

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 101/240 (42%), Gaps = 19/240 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFGGKFVSEGGDFS 246
           QV ++  I E      + +G + S+ G++        SG       D   + ++ G D +
Sbjct: 340 QVLIEARIVEGEHGFSRNLGVRLSMAGTAADGTTRGLSGGKDGLVYDLSARPIA-GFDAA 398

Query: 247 VKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             G L  F+          L ALE       ++ P +       A    G +  Y+    
Sbjct: 399 TAG-LTLFAAGATRLLNVELSALEAEGRGEVVSSPRVVTADRMKAVVEQGTELPYQA-KV 456

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G + V      + L   P ++  GR+ L +  +V++  +G      P+   +   T V
Sbjct: 457 GQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRV 514

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           E+  GGT+ + G+   D +     +P+L KIP+LGALFR+     + +E+ +  TP +V+
Sbjct: 515 EVEDGGTVSIGGIYATDGRDDVTRVPVLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 574


>gi|312972414|ref|ZP_07786588.1| general secretion pathway protein D [Escherichia coli 1827-70]
 gi|310334791|gb|EFQ00996.1| general secretion pathway protein D [Escherichia coli 1827-70]
          Length = 650

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 90/230 (39%), Gaps = 44/230 (19%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277
           AA     +   GG  S     D FS             +  +L AL        LA P++
Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448

Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + ASF             T+ G +++ TV   T          G  L  TP V  
Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    
Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +PL   IP++G LFR +   R +  + +      ++P  +RD    DD Y
Sbjct: 560 VPLPGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600


>gi|284432091|gb|ADB84853.1| PilQ [Bdellovibrio bacteriovorus]
          Length = 726

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 108/241 (44%), Gaps = 16/241 (6%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGP---SKSFAADFGGKFVSEGGD 244
           QV+++  I E +    + IG   S TG       +  GP   + SF  +      S   +
Sbjct: 471 QVSIEGXIVEAKESFTRNIGVNWSATGAPIKLGSTXRGPVNMNPSFNVNQSAAGSSGALN 530

Query: 245 FSVK-GVLDRFSFETVLHAL-ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           F++  G LD F   +   AL E    ++ ++ P +  +S + A      +   + V+ + 
Sbjct: 531 FNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQTTEVPVRQVTQNG 590

Query: 303 GATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADT 358
            AT  T       + L  TP V + G + +++          V++    ++ V  R+A+T
Sbjct: 591 TATQETFQFKPLTLKLEVTPQVTADGSVIMKVLVNRQFRGADVSSAGQGAFAVNSREANT 650

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V + +G T V+ G+ + +    + G+P   ++P +  LF+    ++E++E+ I  TP +
Sbjct: 651 RVLVKNGQTAVIGGIYQSEATDGEVGVPWFRQLPFVSYLFKTKNISKEKSELLILLTPRI 710

Query: 419 V 419
           +
Sbjct: 711 M 711


>gi|15618724|ref|NP_225010.1| general secretion protein D [Chlamydophila pneumoniae CWL029]
 gi|16752225|ref|NP_445593.1| general secretion pathway protein D [Chlamydophila pneumoniae AR39]
 gi|33242175|ref|NP_877116.1| general secretion pathway protein D precursor [Chlamydophila
           pneumoniae TW-183]
 gi|4377127|gb|AAD18953.1| General Secretion Protein D [Chlamydophila pneumoniae CWL029]
 gi|7189969|gb|AAF38829.1| general secretion pathway protein D [Chlamydophila pneumoniae AR39]
 gi|33236686|gb|AAP98773.1| general secretion pathway protein D precursor [Chlamydophila
           pneumoniae TW-183]
          Length = 754

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           VSS           YG+++   P +      G+  + ++T+++    G N  D P    R
Sbjct: 566 VSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRR 625

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
                V +  G T+++ GL    +    +GIP L  IP +G LF  S  +   TE+F+  
Sbjct: 626 NITNKVRIADGETVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFI 685

Query: 415 TP-FLVKPVAMRD 426
           TP  L  PV  ++
Sbjct: 686 TPKILENPVEQQE 698


>gi|15836348|ref|NP_300872.1| general secretion protein D [Chlamydophila pneumoniae J138]
 gi|8979189|dbj|BAA99023.1| general secretion protein D [Chlamydophila pneumoniae J138]
          Length = 754

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           VSS           YG+++   P +      G+  + ++T+++    G N  D P    R
Sbjct: 566 VSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRR 625

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
                V +  G T+++ GL    +    +GIP L  IP +G LF  S  +   TE+F+  
Sbjct: 626 NITNKVRIADGETVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFI 685

Query: 415 TP-FLVKPVAMRD 426
           TP  L  PV  ++
Sbjct: 686 TPKILENPVEQQE 698


>gi|15618612|ref|NP_224898.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydophila pneumoniae CWL029]
 gi|15836234|ref|NP_300758.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138]
 gi|16752338|ref|NP_444596.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39]
 gi|33242060|ref|NP_877001.1| outer membrane secretion protein Q [Chlamydophila pneumoniae
           TW-183]
 gi|4377005|gb|AAD18841.1| probable Yop proteins translocation protein C/general secretion
           pathway protein [Chlamydophila pneumoniae CWL029]
 gi|6672030|dbj|BAA88652.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae]
 gi|7188983|gb|AAF37937.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39]
 gi|8979074|dbj|BAA98909.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138]
 gi|33236570|gb|AAP98658.1| outer membrane secretion protein Q [Chlamydophila pneumoniae
           TW-183]
          Length = 919

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 15/211 (7%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313
           +L AL++      +  P + A   Q ASF  G    Y+T ++    T   T      D G
Sbjct: 699 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQETGTVTQNIDYEDIG 758

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T TV     + L+I+  +SE +   +    P      A T +++P G  +V++G 
Sbjct: 759 VNLVVTSTVAPNNVVTLQIEQTISE-LHSASGSLTPVTDKTYAATRLQIPDGCFLVMSGH 817

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV--AMRDLSRPD 431
           ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++       R  ++  
Sbjct: 818 IRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTRVTNKEG 877

Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
             Y+ E D  +           P+ A E +G
Sbjct: 878 YRYNWEADEGSMQV-------APRHAPECQG 901


>gi|161523474|ref|YP_001578486.1| type IV pilus secretin PilQ [Burkholderia multivorans ATCC 17616]
 gi|160340903|gb|ABX13989.1| type IV pilus secretin PilQ [Burkholderia multivorans ATCC 17616]
          Length = 573

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 2/137 (1%)

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           ++ +    G  L        G T V      + L   P +   GR+ L +  +V++  +G
Sbjct: 406 RAKALVEQGAELPYQAKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVG 463

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                 P+   +   T VE+  GGT+ + G+ +   +     +PLL KIP+LGALFR+  
Sbjct: 464 EPTAAGPAIHTKHVQTRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRA 523

Query: 403 FNREETEIFIAATPFLV 419
              + +E+ +  TP +V
Sbjct: 524 QREQRSELVVFITPTIV 540


>gi|330889718|gb|EGH22379.1| general secretion pathway protein D [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 680

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G         +    S++T  +SV 
Sbjct: 476 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 535

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS         D    P    R   T V   SG
Sbjct: 536 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSG 595

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF ++  ++  TE+ +  TP ++
Sbjct: 596 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI 649


>gi|269103980|ref|ZP_06156677.1| type IV pilus biogenesis protein PilQ [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163878|gb|EEZ42374.1| type IV pilus biogenesis protein PilQ [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 583

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+  +    ++ P L   + ++A    G +  Y   +SS GA SV      + L  T
Sbjct: 421 LSALQAESKAEIISSPRLVTTNKKAAYIEQGTEIPYLEAASS-GAVSVDFKKAVLSLMVT 479

Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +    ++ L +   Q +V E V+    G+  +   ++  T V + +G T+VL G+ + 
Sbjct: 480 PQITPDDKLVLDLLVTQDKVGETVV-TGTGEAVAIDTQRIGTQVLVNNGETVVLGGIYQH 538

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +      +PLL  IP LG LFR+      + E+ I  TP ++
Sbjct: 539 QVNNSVRKVPLLGDIPGLGVLFRHKLQEMGKRELLIFVTPKII 581


>gi|188532939|ref|YP_001906736.1| General secretion pathway protein D [Erwinia tasmaniensis Et1/99]
 gi|188027981|emb|CAO95838.1| General secretion pathway protein D [Erwinia tasmaniensis Et1/99]
          Length = 646

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 5/179 (2%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
           ++  + +AL+  +    LA P++  +    A FT G      T S +T       SV   
Sbjct: 414 NWAGLFNALQTNSLNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGVFNSVDRK 473

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIV 369
             G+ L   P +     + + I+ EVS      +   +  ++  R     V + SG T+V
Sbjct: 474 SVGIKLKVKPQINEGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNAVLVQSGKTVV 533

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           + GLL      ++  +PLL KIP +G LFR +   + +  + +   P +++     DL+
Sbjct: 534 VGGLLDTTHSNVESSVPLLGKIPFIGGLFRYTSDKKSKRNLMLFIRPTIIRQQDSFDLT 592


>gi|262191511|ref|ZP_06049695.1| type II secretory pathway component PulD [Vibrio cholerae CT
           5369-93]
 gi|262032609|gb|EEY51163.1| type II secretory pathway component PulD [Vibrio cholerae CT
           5369-93]
          Length = 559

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 106/261 (40%), Gaps = 38/261 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSE-------- 241
           QV L+  I EV      Q G   S   SS+G S    +     D  G  ++         
Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPGLDAI 336

Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
               GG  +V  V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y T
Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394

Query: 298 -VSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340
            +SS  G+           +T    G+ L  TP +   G + L +   V E        +
Sbjct: 395 DISSVVGSGDNAQASPSIKITPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454

Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 ++P  +  +R++D+ +    G  +V+ GL+K +       +P L  +P LG LF
Sbjct: 455 YRSEEIELPLAKSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RN+    ++TE+ I   P +V
Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535


>gi|269302489|gb|ACZ32589.1| type II/III secretion system protein [Chlamydophila pneumoniae
           LPCoLN]
          Length = 919

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 15/211 (7%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313
           +L AL++      +  P + A   Q ASF  G    Y+T ++    T   T      D G
Sbjct: 699 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQETGTVTQNIDYEDIG 758

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L  T TV     + L+I+  +SE +   +    P      A T +++P G  +V++G 
Sbjct: 759 VNLVVTSTVAPNNVVTLQIEQTISE-LHSASGSLTPVTDKTYAATRLQIPDGCFLVMSGH 817

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV--AMRDLSRPD 431
           ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++       R  ++  
Sbjct: 818 IRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTRVTNKEG 877

Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
             Y+ E D  +           P+ A E +G
Sbjct: 878 YRYNWEADEGSMQV-------APRHAPECQG 901


>gi|325123720|gb|ADY83243.1| type IV pilus assembly protein PilQ [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 721

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTT-HD 311
           F  +  L AL+       ++ P +     Q A   +G Q  Y+T + S+ GAT+ T+  D
Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKD 606

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367
             + L  TP++   G+I +++  ++S+  +   +G  P+  +        T V + +G T
Sbjct: 607 ALLSLDVTPSITPDGKIQMKL--DISKDSV---SGAAPNGELILNKNNIKTNVLVNNGET 661

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++L G+ +      +  +P    +P +G LFR  + + ++ E+ I  TP +V    +R+
Sbjct: 662 VILGGVFEQTTLNSQTKVPFFGDLPGIGRLFRKDQKSDDKQELLIFVTPRIVNDTLVRN 720


>gi|149194260|ref|ZP_01871357.1| putative type II protein secretion system D protein [Caminibacter
           mediatlanticus TB-2]
 gi|149135435|gb|EDM23914.1| putative type II protein secretion system D protein [Caminibacter
           mediatlanticus TB-2]
          Length = 450

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 17/191 (8%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----TVSSSTG----AT 305
           F+    L+ L +   + +++ P +  ++ Q A  + G    YK     V+   G      
Sbjct: 254 FNSAAFLNFLAQNGNVNSISNPKIMTLNNQKAIISVGDTIYYKYASKVVTDQNGNPQTQY 313

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMP-SYRVRKADTT 359
           ++     GV+L  TP +   G I L I   +S       +      DMP   +     + 
Sbjct: 314 TIGNKFVGVILDITPQISDDGTIILSIAPRISAFRDLNQLSTQTVRDMPPDTKDNTMLSV 373

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V++    TIVL GL+ DD      G+P+L +IPI+  LF +      + E+    TP ++
Sbjct: 374 VKVKDNDTIVLGGLISDDKSLKVNGVPILKEIPIVKYLFSSKERITNKKELVFVITPHII 433

Query: 420 ---KPVAMRDL 427
              K   +RDL
Sbjct: 434 NLKKKKTLRDL 444


>gi|221213453|ref|ZP_03586428.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD1]
 gi|221166905|gb|EED99376.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD1]
          Length = 571

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 2/137 (1%)

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           ++ +    G  L        G T V      + L   P +   GR+ L +  +V++  +G
Sbjct: 404 RAKALVEQGAELPYQAKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVG 461

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                 P+   +   T VE+  GGT+ + G+ +   +     +PLL KIP+LGALFR+  
Sbjct: 462 EPTAAGPAIHTKHVQTRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRA 521

Query: 403 FNREETEIFIAATPFLV 419
              + +E+ +  TP +V
Sbjct: 522 QREQRSELVVFITPTIV 538


>gi|37523454|ref|NP_926831.1| hypothetical protein gll3885 [Gloeobacter violaceus PCC 7421]
 gi|35214458|dbj|BAC91826.1| gll3885 [Gloeobacter violaceus PCC 7421]
          Length = 299

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 20/171 (11%)

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQ-HLYKT-VSSSTGATSVTTHDYGVVLHFTPTVL-S 324
           A++TL +  L    G++A+ +   Q  + +T VS+ T  +S    +    L+ TP VL S
Sbjct: 107 ALQTLIDQQLVVSDGETATISQNVQFRIPQTIVSNGTALSSTQAINARTTLNLTPMVLPS 166

Query: 325 PGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             ++ + ++ + S+P       VI  N+ D+P+ R         L SGG  +L G+ + D
Sbjct: 167 KKQVAISVRGDFSDPQGSGEGLVINTNSIDIPNLR---------LDSGGVALLGGITRHD 217

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDL 427
              ++  +P+LS IPILG LF++S    ++  + +   P +  +P+A  +L
Sbjct: 218 EANIEYRVPVLSAIPILGDLFKSSNRVVKDQRLLVMIEPVIQEQPLAGAEL 268


>gi|298369928|ref|ZP_06981244.1| type IV pilus secretin PilQ [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281388|gb|EFI22877.1| type IV pilus secretin PilQ [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 715

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 2/165 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E     +TL+ P +     + A   SG +  Y+  +SS GATSVT     + L  T
Sbjct: 547 LSASEELGKSKTLSNPRVLTQDRKEAIIESGTEIPYQEATSS-GATSVTFKKAVLGLTVT 605

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G+I + ++     P+     G        +  +T   +  GGT+++ G+ +++ 
Sbjct: 606 PNITPDGQIIMTVKINKDSPIDCQTDGLRTKCISTKNLNTQAMVEDGGTLIVGGIYEEEN 665

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                 +PLL  IP++G LF++   +    E+ I  TP ++  V 
Sbjct: 666 SNAVNKVPLLGDIPVVGNLFKSRGRSERRRELLIFITPRIMDGVG 710


>gi|293610712|ref|ZP_06693012.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827056|gb|EFF85421.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 721

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTT-HD 311
           F  +  L AL+       ++ P +     Q A   +G Q  Y+T + S+ GAT+ T+  D
Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKD 606

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367
             + L  TP++   G+I +++  ++S+  +   +G  P+  +        T V + +G T
Sbjct: 607 ALLSLDVTPSITPDGKIQMKL--DISKDSV---SGAAPNGELILNKNNIKTNVLVNNGET 661

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++L G+ +      +  +P    +P +G LFR  + + ++ E+ I  TP +V    +R+
Sbjct: 662 VILGGVFEQTTLNSQTKVPFFGDLPGIGRLFRKDQKSDDKQELLIFVTPRIVNDTLVRN 720


>gi|238793311|ref|ZP_04636937.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia intermedia ATCC 29909]
 gi|238727280|gb|EEQ18808.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia intermedia ATCC 29909]
          Length = 486

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 12/212 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ + VTI +V    + Q+G   S + S  G   SF ++ G    S  G  +V G  D  
Sbjct: 260 QIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSNSGKN--SADGFSTVIG--DTG 315

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +F   L+AL++ +  R L+ P++  ++   A          K            T   G 
Sbjct: 316 NFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKLQGDKVAKLESITS--GS 373

Query: 315 VLHFTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           +L  TP ++    +      L IQ    +  I  ++  +P  +     T   L  G +++
Sbjct: 374 LLRVTPRMIDADGVKEVLLNLNIQDGQQQAAIS-SSEPLPEIQNSDISTQATLRVGQSLL 432

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           L G ++D   + +  IPLL  IP+LG LFR++
Sbjct: 433 LGGFIQDKQIESQNKIPLLGDIPLLGGLFRST 464


>gi|16124428|ref|NP_418992.1| general secretion pathway protein D [Caulobacter crescentus CB15]
 gi|221233111|ref|YP_002515547.1| type II secretion pathway protein D [Caulobacter crescentus NA1000]
 gi|13421292|gb|AAK22160.1| general secretion pathway protein D [Caulobacter crescentus CB15]
 gi|220962283|gb|ACL93639.1| type II secretion pathway protein D [Caulobacter crescentus NA1000]
          Length = 687

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 9/187 (4%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  +++A+++ T    L+ P++  +  + A    G Q +  T     G +      ++  
Sbjct: 460 FGAIINAVKKDTGSNLLSTPSIMTLDNEEARILVG-QEVPITTGEVLGDSNANPFRTIQR 518

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTI 368
            + G+ L   P + + G I L ++ EVS     V+ G        R+ +TT  +  G  +
Sbjct: 519 QNVGIQLEVKPQINAGGGITLFLRQEVSSVAGPVSVGSSELIINKREIETTALVDDGDIV 578

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDL 427
           VL GLL     Q  +  P L  +P LGALFR++   R++T + +   P +++  A  R+L
Sbjct: 579 VLGGLLDQQETQSAQRTPGLGDVPGLGALFRSTARERKKTNLMVFIRPRIIRSSADARNL 638

Query: 428 SRPDDHY 434
           + P   Y
Sbjct: 639 TAPRYDY 645


>gi|257485358|ref|ZP_05639399.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 341

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G         +    S++T  +SV 
Sbjct: 137 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 196

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS         D    P    R   T V   SG
Sbjct: 197 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSG 256

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF ++  ++  TE+ +  TP ++
Sbjct: 257 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI 310


>gi|221201610|ref|ZP_03574648.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2M]
 gi|221207315|ref|ZP_03580325.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2]
 gi|221172903|gb|EEE05340.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2]
 gi|221178426|gb|EEE10835.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2M]
          Length = 571

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 2/129 (1%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G T V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 412 GAELPYQAKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPA 469

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T VE+  GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+
Sbjct: 470 IHTKHVQTRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSEL 529

Query: 411 FIAATPFLV 419
            +  TP +V
Sbjct: 530 VVFITPTIV 538


>gi|254254052|ref|ZP_04947369.1| Type II secretory pathway component HofQ [Burkholderia dolosa
           AUO158]
 gi|124898697|gb|EAY70540.1| Type II secretory pathway component HofQ [Burkholderia dolosa
           AUO158]
          Length = 735

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 35/248 (14%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGGKFVSEGGDFSVKGVL 251
           + +VTL V + EV  +    +G Q+        P K  F+A  G    ++GG  ++  +L
Sbjct: 350 QSEVTLDVQVLEVNMNDSLDLGVQY--------PGKLQFSALAG----ADGGALTLGDLL 397

Query: 252 ----DRF-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
               DR        +    +  L++    RTLA P +   + + AS   G +    T ++
Sbjct: 398 RLNRDRIGVSSESGALSMAIDLLQKQGKTRTLANPKIRVRNMEKASIKIGERVPIVTTTN 457

Query: 301 STG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYR 352
           + G    SV+  D G++L   P +     + +++  EVS  +       G+ A    S  
Sbjct: 458 ANGVVTESVSYQDVGLMLKVEPRISLDDEVSVKVNMEVSSILSKETTKTGLVAY---SLG 514

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A+T +   +G T +LAGL+K +      G+P +S +PI+G LF +   + + +EI +
Sbjct: 515 TRNAETLMTARNGQTQILAGLVKRNETDNASGLPGVSGLPIVGRLFGSHGRSHDRSEIVL 574

Query: 413 AATPFLVK 420
             TP + +
Sbjct: 575 LITPHIER 582


>gi|71280237|ref|YP_271224.1| MSHA biogenesis protein MshL [Colwellia psychrerythraea 34H]
 gi|71145977|gb|AAZ26450.1| MSHA biogenesis protein MshL [Colwellia psychrerythraea 34H]
          Length = 609

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 19/183 (10%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----------VSSSTGAT 305
           F  V+  L+    ++ L+ P +TA + Q A    G    + T           +++T   
Sbjct: 360 FSGVIELLQTQGNVQVLSSPRITATNNQKAVIKVGEDEYFVTEVSSTTTTGTSTTTTPEV 419

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGD------MPSYRVRKA 356
            +T    G+ L  TP +   G + L +   V+   E    +  GD      +    VR++
Sbjct: 420 ELTPFFSGIALDVTPQISKDGSVILHVHPSVTITEEQSKTIKIGDTTLVLPLAQSSVRES 479

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT +   SG  +V+ GL++     ++   P+L  IP LG LF+N     ++ E+ I   P
Sbjct: 480 DTIIRANSGEVVVIGGLIETYNIDIESKTPILGDIPYLGELFKNKSQKSQKRELVIMLKP 539

Query: 417 FLV 419
            +V
Sbjct: 540 IVV 542


>gi|262277342|ref|ZP_06055135.1| putative outer membrane protein [alpha proteobacterium HIMB114]
 gi|262224445|gb|EEY74904.1| putative outer membrane protein [alpha proteobacterium HIMB114]
          Length = 544

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 5/180 (2%)

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           +GG   + G + R      + A    T   T++ P + AI GQ A+ + G Q +    +S
Sbjct: 369 QGGTLII-GSIGRALLSATIAASVSDTNSETISNPKIFAIDGQQATISQGTQQVRSVPAS 427

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR-VRKADTT 359
              A    T D+ +    TPT++      +R+Q  ++   +G    D  + +      +T
Sbjct: 428 GGDAGGFETLDFTLNFGVTPTIVGDK---VRLQISLANDSLGQGGTDANTPKNTENVTST 484

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V L +G   +L G+ K+  Q     +PLL +IP+LG  F+    +  ++++ I  T  +V
Sbjct: 485 VVLNNGDVAILGGVYKNTKQDDIIFVPLLHRIPVLGEFFKKKTKSDTKSQLLIFVTANIV 544


>gi|251773365|gb|EES53914.1| putative type II secretion system protein D [Leptospirillum
           ferrodiazotrophum]
          Length = 604

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 126/325 (38%), Gaps = 61/325 (18%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           LE+TLR+ I  + +  +  S TV + G VR +  +QR +++         R+Q       
Sbjct: 266 LEITLRKTIPHAVVSADPKSQTVSVRGTVRDVYLAQRYLDIV--------RDQL------ 311

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----------FQHSITGSSSGPSKSFAA 232
                       +V  ++T+AE+        G          F  +++ +S G S +  +
Sbjct: 312 ----------RREVFFRITVAEIDLSDANAYGINWSAMAKGVFNSTLSLTSGGTSNAGLS 361

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-- 290
             GG     G  F    V+          AL+    +  L +P +  +SGQ  S  +   
Sbjct: 362 ATGGVATPYGATFGQTAVI---------QALDTIGRVHVLNQPYVGTVSGQPVSLNATTN 412

Query: 291 -----GQHLYKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLR-------IQTE 335
                G++ +     S+   ++    Y   GV L  TPT L   +I L        +Q  
Sbjct: 413 IPYLQGEYPFFAGGLSSATETLPQIAYAAVGVNLEVTPT-LEGDQIHLHGTVVVNTLQQM 471

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           V+  +  +     P    R   T +    G TIV+ GL+ +   +    IP L  IP L 
Sbjct: 472 VTINIKNIGEFQNPQINTRSETTEITAHDGQTIVIGGLMANTKNKQFWTIPFLGSIPGLK 531

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            LF    + ++ TE+ I  TP + K
Sbjct: 532 WLFSGYNYQKQVTELAILITPEIKK 556


>gi|206891200|ref|YP_002248265.1| PilQ [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206743138|gb|ACI22195.1| PilQ [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 663

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + AL+++   + ++ P +  +  Q A    G    Y      +G  S    D  + +  T
Sbjct: 499 ISALQQSGKGKVISNPKVITLDNQKAKIVQGASIPYGEKDVQSGQISTKFKDVAITVEAT 558

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDD 377
           P ++    + L +     + V  VN G + + R  K   +T V L  G T+V+ G+ K  
Sbjct: 559 PHLIDDKSMLLDVSVIKEDLVEFVNIGGVYAPRTTKIEGNTKVSLKDGETLVIGGIYKKT 618

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREET--EIFIAATPFLVK 420
               +  +P L  +P+LG LF++    R+ET  E+ I  TP ++K
Sbjct: 619 DSLTESKVPGLGDVPLLGELFKSR--GRDETLYEVMIFVTPRILK 661


>gi|3978519|gb|AAD04923.1| PilQ [Myxococcus xanthus DK 1622]
          Length = 901

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 7/163 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLH 317
           L A E   +++T++ P +T +   +A    G    +    S T A  V T   +  + L 
Sbjct: 734 LSAAENEGSVKTISAPKVTTLDNNTARINQGVSIPF----SQTSAQGVNTTFVEARLSLE 789

Query: 318 FTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            TP +   G + + I    ++P      A   PS + ++A+T V +  G T V+ G+   
Sbjct: 790 VTPHITQDGSVLMSINASNNQPDPSSTGANGQPSIQRKEANTQVLVKDGDTTVIGGIYVR 849

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                   +P LS+IP+LG LF+N+       E+ I  TP ++
Sbjct: 850 RGATQVNSVPFLSRIPVLGLLFKNNSETDTRQELLIFITPRIL 892


>gi|217076176|ref|YP_002333892.1| bacterial type II and III secretion system protein [Thermosipho
            africanus TCF52B]
 gi|217036029|gb|ACJ74551.1| bacterial type II and III secretion system protein [Thermosipho
            africanus TCF52B]
          Length = 1318

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 29/213 (13%)

Query: 236  GKFVSEGG-----DFSVKGVLDRFSFETVLHAL--------------------ERATAIR 270
            GK  S+ G     DF+VK  L   S E +++ L                           
Sbjct: 1107 GKITSDLGTLSNDDFNVKLSLSNLSIEGIINKLLSIGSDGNSSLNIEIGNGNNVTNKNTN 1166

Query: 271  TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
             LA P + A SG++AS   G + +   +S++     +   + GV L  TP + +   I L
Sbjct: 1167 VLASPNVVAKSGETASILIGDK-IPIVLSTAENTQEIKYIESGVTLEITPYINADNTIDL 1225

Query: 331  RIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
             +  +VS     + +     +P  R R+  + + L    T+V+ GL +++  +    IP+
Sbjct: 1226 ELNIKVSSFDWDLKSQYSLSLPVERTREFSSKILLKENQTLVIGGLSREENSKTVSKIPI 1285

Query: 388  LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  +PI+G  F + + ++ +  I I  +  +VK
Sbjct: 1286 LGDLPIIGKFFVSEKSDKVKRNIVIFISAKVVK 1318


>gi|323173796|gb|EFZ59425.1| general secretion pathway protein D [Escherichia coli LT-68]
          Length = 613

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 9/152 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           L GL+ D   +    +PLL  IP++G LF+++
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKST 607


>gi|167003376|ref|ZP_02269162.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei PRL-20]
 gi|243061081|gb|EES43267.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei PRL-20]
          Length = 599

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 438 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 494

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 495 LPMVVDEGGCTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 550

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E F   TP +++P
Sbjct: 551 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERFFLVTPRVIEP 599


>gi|110835094|ref|YP_693953.1| fimbrial assembly protein pilQ [Alcanivorax borkumensis SK2]
 gi|110648205|emb|CAL17681.1| Fimbrial assembly protein pilQ precursor [Alcanivorax borkumensis
           SK2]
          Length = 723

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 9/167 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            E  L ALE       +A P +     Q A   SG Q  ++ +++S+GATS+   +  + 
Sbjct: 558 IELELSALEAEGHGELVATPKVLTADQQPAVIASGQQVPFE-IATSSGATSIDFVEAELR 616

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +   G I + ++          ++    +    + +T+V +  G T+VL G+ +
Sbjct: 617 LEVTPHITPDGNIIMMLKVNNDS----FSSDGSAAINTNRVETSVLVNDGETVVLGGIFQ 672

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFLVK 420
            +        P L  +P +GALFR +  R N++E  IFI  TP L+K
Sbjct: 673 QEKINSVTKTPFLGDLPWIGALFRKTVNRDNKQELLIFI--TPRLMK 717


>gi|312972778|ref|ZP_07786951.1| general secretion pathway protein D [Escherichia coli 1827-70]
 gi|310332720|gb|EFP99933.1| general secretion pathway protein D [Escherichia coli 1827-70]
          Length = 613

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 9/152 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  ++ A++  ++   L+ P++T +  Q A F  G Q +     S+ G+       +V  
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G++L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IV
Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           L GL+ D   +    +PLL  IP++G LF+++
Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKST 607


>gi|261854769|ref|YP_003262052.1| general secretion pathway protein D [Halothiobacillus neapolitanus
           c2]
 gi|261835238|gb|ACX95005.1| general secretion pathway protein D [Halothiobacillus neapolitanus
           c2]
          Length = 725

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 22/194 (11%)

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL- 294
           G++   G DF++           ++ AL   +    L+ P+L  +  Q AS   G Q++ 
Sbjct: 464 GRYGQGGADFAL-----------LVSALAGNSGNNILSTPSLLTLDNQEASIVVG-QNIP 511

Query: 295 -----YKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
                Y    S+T  T    ++T  D GV L  TPT+   G + L+I+ EVS       +
Sbjct: 512 IVTGSYAQTGSATSPTNPFQTITREDIGVKLKVTPTISPDGTVRLKIEQEVSSLDSAAQS 571

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
                   R   TTV++  G  +VL GL+ D     ++ +P L  IPILG LFR    + 
Sbjct: 572 SAGLITNKRNVTTTVQVDDGDVVVLGGLIDDSTNSNQQSVPGLGDIPILGNLFRYRSAST 631

Query: 406 EETEIFIAATPFLV 419
            +  + I   P +V
Sbjct: 632 NKRNLMIFIRPLIV 645


>gi|254448224|ref|ZP_05061686.1| Bacterial type II and III secretion system protein [gamma
           proteobacterium HTCC5015]
 gi|198262091|gb|EDY86374.1| Bacterial type II and III secretion system protein [gamma
           proteobacterium HTCC5015]
          Length = 629

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 11/152 (7%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LA PTL A +GQ++ F SG +     VS   G +     + GV L  TP     G I L+
Sbjct: 395 LARPTLVARAGQTSEFFSGVEVSAAAVSGGAGDSISVEKEIGVKLAVTPEFGPDGSIILQ 454

Query: 332 IQTE---VSEPVIGVNAGDMPSYRVRKADTTVE----LPSGGTIVLAGLLKDDIQQLKEG 384
           ++ E   ++ P   V    +  +R+    TTV     +  G T++L GL + + +   +G
Sbjct: 455 VEAERTFLTTPSSSV----LFEFRLDTTKTTVNANVAMNYGQTLILGGLNERETENDSDG 510

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +P+L  IP++   F        +  + I  TP
Sbjct: 511 VPILRDIPLINLFFSRKTQRDFKKSVMILLTP 542


>gi|297181980|gb|ADI18156.1| type II secretory pathway, component puld [uncultured
           Verrucomicrobiales bacterium HF0200_39L05]
          Length = 800

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 26/203 (12%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G FS     D  S E  + AL  +++ + L  P +       A+F +G Q  Y+  S   
Sbjct: 527 GGFSYISRYDN-SLEFAMSALANSSSAKVLQTPRVQTSHAVPATFFNGEQVPYQGSSGYG 585

Query: 303 GATSVTTH----------------DYGVVLHFTPTVLSPGRIGLRIQTEVSE-------- 338
           G                       + G+ L  TP +     + + IQ  +SE        
Sbjct: 586 GYGGGYGGYGGYGGYGGGGYTQFLNVGITLDVTPYITPDDLVVMEIQQTISELDGFIDMG 645

Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
               G +    P    R+A +TV +  G TI+L G +++     + G+P L  IP+LG L
Sbjct: 646 GGQQGSSGMKAPQTTEREAASTVSVRDGDTILLGGFIRNSKTGTESGVPFLKDIPLLGNL 705

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F+N     + +E+ +   P ++K
Sbjct: 706 FKNESNTNKRSELLVLIRPTILK 728


>gi|322418671|ref|YP_004197894.1| type II and III secretion system protein [Geobacter sp. M18]
 gi|320125058|gb|ADW12618.1| type II and III secretion system protein [Geobacter sp. M18]
          Length = 862

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 18/185 (9%)

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGR 327
            TL+ P +   + + A F  G +    T SS++  TSV     D GV ++  PT+     
Sbjct: 424 ETLSNPKIRVKNREKAKFNVGTRVPITTTSSTSTGTSVNVQYVDVGVKVNAEPTIQLNNE 483

Query: 328 IGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           + +++  EVS     E V    A  + +   R  DT + L  G T ++ GL++      K
Sbjct: 484 VVIKLGLEVSSILGREKVGTDQATTVVTIGTRNLDTVLSLKDGETSIIGGLMQKSETDSK 543

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           + + LL  IP+LG LF N+  + +++E+ +A TP +V+ V +            E+D  A
Sbjct: 544 KKVFLLGDIPVLGNLFSNTGKSNDKSELLLAITPRIVRGVTVP-----------ENDVAA 592

Query: 443 FFFNR 447
           F+  R
Sbjct: 593 FWSGR 597


>gi|313291988|gb|ADR51186.1| general secretion pathway protein D [Aeromonas veronii]
          Length = 679

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 52/267 (19%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--------AADFGGKFVSEGGDFS 246
           QV ++  I E++      +G Q    G+++G    F        +A   GK    G   +
Sbjct: 350 QVLVEAIIVEMQDGDGLSLGVQW---GNANGGGTQFTNSGLPLGSAIAAGKDYQNGKTDT 406

Query: 247 VKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---- 292
             G+L  F+          +  +  AL   T    L+ P++  +  + ASF  G +    
Sbjct: 407 AAGLLKEFNGMAAGFYHGDWAMLATALASNTKNDILSTPSIVTMDNKEASFNVGQEVPVQ 466

Query: 293 ----------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
                      ++ T+   T          G  L  TP +     + L I+ EVS     
Sbjct: 467 SGSQSSTTSDQVFNTIERKT---------VGTKLVVTPQINEGDSVLLNIEQEVSSVAQT 517

Query: 343 VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              G     P++  R     V + SG T+VL GL+ +  ++    +PLL  IP+LG LFR
Sbjct: 518 QATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQVSKVPLLGDIPVLGYLFR 577

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRD 426
           ++     +  + +      ++P  +RD
Sbjct: 578 STSNTTSKRNLMV-----FIRPTILRD 599


>gi|289648905|ref|ZP_06480248.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330987884|gb|EGH85987.1| general secretion pathway protein D [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 775

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G         +    S++T  +SV 
Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 630

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS         D    P    R   T V   SG
Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSG 690

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF ++  ++  TE+ +  TP ++
Sbjct: 691 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI 744


>gi|262373636|ref|ZP_06066914.1| general secretion pathway protein D [Acinetobacter junii SH205]
 gi|262311389|gb|EEY92475.1| general secretion pathway protein D [Acinetobacter junii SH205]
          Length = 709

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 5/179 (2%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           L  F  +  L A++       ++ P +     Q+A   SG Q  Y + S+  GA +V   
Sbjct: 532 LSDFMLDLELSAVQADGYGEVVSTPKVLTADKQAAKIESGTQIPYSS-STGGGANAVPKT 590

Query: 311 ---DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              D  + L  TP++   G++ +++      P      G + +      DT V + +G T
Sbjct: 591 EFIDATLSLDVTPSITPEGKVMMKLNITKDSPGTPTPTGQL-TINKNTIDTNVVVDNGET 649

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +VL G+ + +    +  +P L  +P +G LFR       + E+ I  TP +V     R+
Sbjct: 650 VVLGGIFEQENINSQTKVPFLGDLPYVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRN 708


>gi|330443957|ref|YP_004376943.1| type II and III secretion system protein [Chlamydophila pecorum
           E58]
 gi|328807067|gb|AEB41240.1| Bacterial type II and III secretion system protein [Chlamydophila
           pecorum E58]
          Length = 751

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%)

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            VS+           YG+++   P +      G+  + ++T+++    G N  D P    
Sbjct: 562 AVSAENDKALYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNMDDRPEVTR 621

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V +  G ++++ GL    +   +EGIP L +IP LG LF  +  +   TE+F+ 
Sbjct: 622 RNITNKVRIADGESVIIGGLRCKHMSDSQEGIPFLGEIPGLGKLFSMNAVSDSLTEMFVF 681

Query: 414 ATP 416
            TP
Sbjct: 682 ITP 684


>gi|330830590|ref|YP_004393542.1| general secretion pathway protein D [Aeromonas veronii B565]
 gi|328805726|gb|AEB50925.1| General secretion pathway protein D [Aeromonas veronii B565]
          Length = 679

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 52/267 (19%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--------AADFGGKFVSEGGDFS 246
           QV ++  I E++      +G Q    G+++G    F        +A   GK    G   +
Sbjct: 350 QVLVEAIIVEMQDGDGLSLGVQW---GNANGGGTQFTNSGLPLGSAIAAGKDYQNGKTDT 406

Query: 247 VKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---- 292
             G+L  F+          +  +  AL   T    L+ P++  +  + ASF  G +    
Sbjct: 407 AAGLLKEFNGMAAGFYHGDWAMLATALASNTKNDILSTPSIVTMDNKEASFNVGQEVPVQ 466

Query: 293 ----------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
                      ++ T+   T          G  L  TP +     + L I+ EVS     
Sbjct: 467 SGSQSSTTSDQVFNTIERKT---------VGTKLVVTPQINEGDSVLLNIEQEVSSVAQT 517

Query: 343 VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              G     P++  R     V + SG T+VL GL+ +  ++    +PLL  IP+LG LFR
Sbjct: 518 QATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQVSKVPLLGDIPVLGYLFR 577

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRD 426
           ++     +  + +      ++P  +RD
Sbjct: 578 STSNTTSKRNLMV-----FIRPTILRD 599


>gi|255595192|ref|XP_002536247.1| conserved hypothetical protein [Ricinus communis]
 gi|223520311|gb|EEF26137.1| conserved hypothetical protein [Ricinus communis]
          Length = 316

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R A+TT++L +  T +LAGL +DD Q+ +  +P L  +P++G LF ++  ++ + EI + 
Sbjct: 34  RNANTTLQLRNNETQILAGLFRDDEQKTRRKVPGLGNLPLIGKLFSSNNEDKRKNEIVL- 92

Query: 414 ATPFLVKPVAMRDLSRPDDHYSV 436
               L+ P  M +LS     YS+
Sbjct: 93  ----LITPRIMHNLSPASSVYSL 111


>gi|225163988|ref|ZP_03726276.1| type II and III secretion system protein [Opitutaceae bacterium
           TAV2]
 gi|224801402|gb|EEG19710.1| type II and III secretion system protein [Opitutaceae bacterium
           TAV2]
          Length = 928

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 46/240 (19%)

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           S P+    AD G      G   S+ GV+  F     + A+ +      L+ P +T +SG 
Sbjct: 657 SPPATPGTADTGSAV---GNIASITGVMGNFDVAAQIRAIAQKQGSDLLSAPKVTVLSGN 713

Query: 284 SASFTSGGQHL-----YKTVSSSTGATSVT------------------THDYGVVLHFTP 320
            A F    Q L     Y    S  G +S                    T + GV L  TP
Sbjct: 714 PA-FMVVAQELRYPQSYGETESEVGTSSGNGGGAAGVTITPGTPEEFVTRNVGVELRVTP 772

Query: 321 TVLSPG-RIGLRIQTEVSE------------PVIGVNAGDMPS------YRVRKADTTVE 361
           TV      I L +  +V+E             + G     +PS      +  R+  T V 
Sbjct: 773 TVEDDNYSITLDLNPKVTEFEGFIEYGGSSVAISGNTTVTLPSGYYQPIFSTREVTTKVT 832

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G T+V+ GL +++++++ + +P+L  IP LG LF++   + ++  + +  T  LV P
Sbjct: 833 VWDGATLVMGGLTREEVKRVNDKVPILGDIPFLGRLFKSKGESSQKRNLLVFVTANLVSP 892


>gi|121607022|ref|YP_994829.1| type IV pilus secretin PilQ [Verminephrobacter eiseniae EF01-2]
 gi|121551662|gb|ABM55811.1| type IV pilus secretin PilQ [Verminephrobacter eiseniae EF01-2]
          Length = 712

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------FETV-LHA 262
           G  +S    +SG + S A D GG FV+     S    +  F+          F T+ L A
Sbjct: 492 GTSYSDAVKASGANGSTAPDTGGNFVNLPASLSSVNTVGSFALSIFNAATNKFLTLELSA 551

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           +E     R ++ P +       A    G ++ Y  V++  GAT++      + L  +P +
Sbjct: 552 MEADGKGRIVSSPRIITADQTKALIEQGTEYPY-AVTAPNGATTLAFKKAVLKLEVSPQI 610

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
              G I L +  +VS+   G       +   +   T + + +GGT+V+ G+ + +    +
Sbjct: 611 TPEGNIILDL--DVSKDSRGETTSQGVAIDTKHIKTQILIENGGTVVIGGIFEMEETSQE 668

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             IP L  +P++G LF++      + E+ I  TP ++
Sbjct: 669 NKIPFLGDVPVVGNLFKSKTKETTKREMLIFITPKVI 705


>gi|37520489|ref|NP_923866.1| hypothetical protein gll0920 [Gloeobacter violaceus PCC 7421]
 gi|35211483|dbj|BAC88861.1| gll0920 [Gloeobacter violaceus PCC 7421]
          Length = 632

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 15/234 (6%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           QV  +V I E+     +++    +I +GS+  P  +     GG F S    F+    + R
Sbjct: 383 QVVFEVKIVELSDAGSRELNALRTIQSGSAVSPGNTAPLSLGGLF-SPPTSFATFNDIAR 441

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG------QHLYKTVSSSTGATSV 307
                V++ L      R + +  L  I+GQ AS             L     ++   T++
Sbjct: 442 AIV--VINGLITENKARVVTDTKLNTITGQKASIDVQTDINLILNQLTNVSGATVNNTTL 499

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVEL 362
           +T   G V+  TPTV + G +   +  E S P              P+   RK    + +
Sbjct: 500 STLRAGTVVELTPTVQADGNVLAELSVESSVPQGTTTLTSSGTTVPPNIARRKVKNIILV 559

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
             G T+ + GL++   +++   +P    IP++G LF N+  + E++E+ +  TP
Sbjct: 560 KDGQTLEIGGLIQTTNREVITRVPFFGYIPLIGQLFSNTNVSLEQSELVVFITP 613


>gi|206577210|ref|YP_002240367.1| pullulanase secretion envelope protein PulD [Klebsiella pneumoniae
           342]
 gi|206566268|gb|ACI08044.1| pullulanase secretion envelope protein PulD [Klebsiella pneumoniae
           342]
          Length = 648

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 16/212 (7%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
           ++  +L AL  +T    LA P++  +    A+F  G +    T S +T       +V   
Sbjct: 411 NWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGSQTTSGDNIFNTVERK 470

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGT 367
             G+ L   P +     + L I+ EVS      ++       ++  R  +  V + SG T
Sbjct: 471 TVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFNTRTVNNAVLVGSGET 530

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +V+ GLL   +    + +PLL  IP++GALFR+     E  ++        ++P  +RD 
Sbjct: 531 VVVGGLLDKSVTDTADKVPLLGDIPVIGALFRS-----ESKKVSKRNLMLFIRPTIIRD- 584

Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
               D Y      +   F+        K++SE
Sbjct: 585 ---RDEYRQASSGQYTAFDNAQTKQRGKDSSE 613


>gi|156973989|ref|YP_001444896.1| hypothetical protein VIBHAR_01700 [Vibrio harveyi ATCC BAA-1116]
 gi|156525583|gb|ABU70669.1| hypothetical protein VIBHAR_01700 [Vibrio harveyi ATCC BAA-1116]
          Length = 623

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 13/217 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           + ++ + ++I ++  + L Q+G         G++S        D  G  V+ G   + K 
Sbjct: 291 QSRIEVALSIVDISANDLSQLGVDWRAGIEVGNNSILDIKTTGDVDGGDVTLGSGQTFKS 350

Query: 250 VLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +LD  +   +L     LE   + + ++ PTL       A   +      K +   T A  
Sbjct: 351 LLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYIKLIGRETAALE 410

Query: 307 VTTHDYGVVLHFTPTVLSP-----GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             T  YG +L   P ++         I L +  E    +      D+PS R  +  T   
Sbjct: 411 EVT--YGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSIRKTEISTLAT 468

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           +  G ++++ G+ +D++      +PLL  IP LGALF
Sbjct: 469 VKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALF 505


>gi|269963152|ref|ZP_06177487.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832116|gb|EEZ86240.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 623

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 13/217 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           + ++ + ++I ++  + L Q+G         G++S        D  G  V+ G   + K 
Sbjct: 291 QSRIEVALSIVDISANDLSQLGVDWRAGIEVGNNSILDIKTTGDVDGGDVTLGSGQTFKS 350

Query: 250 VLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +LD  +   +L     LE   + + ++ PTL       A   +      K +   T A  
Sbjct: 351 LLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLIGRETAALE 410

Query: 307 VTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             T  YG +L   P ++         I L +  E    +      D+PS R  +  T   
Sbjct: 411 EVT--YGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSIRKTEISTLAT 468

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           +  G ++++ G+ +D++      +PLL  IP LGALF
Sbjct: 469 VKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALF 505


>gi|288937072|ref|YP_003441131.1| general secretion pathway protein D [Klebsiella variicola At-22]
 gi|290512493|ref|ZP_06551859.1| general secretion pathway protein D [Klebsiella sp. 1_1_55]
 gi|288891781|gb|ADC60099.1| general secretion pathway protein D [Klebsiella variicola At-22]
 gi|289774834|gb|EFD82836.1| general secretion pathway protein D [Klebsiella sp. 1_1_55]
          Length = 651

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 20/214 (9%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
           ++  +L AL  +T    LA P++  +    A+F  G +    T S +T       +V   
Sbjct: 414 NWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGSQTTSGDNIFNTVERK 473

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGT 367
             G+ L   P +     + L I+ EVS      ++       ++  R  +  V + SG T
Sbjct: 474 TVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFNTRTVNNAVLVGSGET 533

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFLVKPVAMR 425
           +V+ GLL   +    + +PLL  IP++GALFR+   + ++    +FI       +P  +R
Sbjct: 534 VVVGGLLDKSVTDTADKVPLLGDIPVIGALFRSESKKVSKRNLMLFI-------RPTIIR 586

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           D     D Y      +   F+        K++SE
Sbjct: 587 D----RDEYRQASSGQYTAFDNAQTKQRGKDSSE 616


>gi|301165498|emb|CBW25069.1| putative pilus assembly protein [Bacteriovorax marinus SJ]
          Length = 609

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 120/271 (44%), Gaps = 39/271 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--------------------- 220
           KK++++L+     QV ++  I EV  +  K+IG Q+ +                      
Sbjct: 334 KKIVDVLDTQTP-QVLIESKIVEVNENYRKEIGLQNGVNFGYDPIGQIGSANPTVVGSDV 392

Query: 221 --GSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFS----FETVLHALERATAIRTLA 273
             G+++GP  SF++       S  G  S+ G+ + RF+        L  LE  +  + +A
Sbjct: 393 LPGTNAGPGFSFSSAPS----SGDGARSLFGLTVTRFNRLLNLSFTLQLLETESKGKIVA 448

Query: 274 EPTLTAISGQSASF-TSGGQHLYKTVSSSTGATSVTTHDY--GVVLHFTPTVLSPGRIGL 330
            P +   + + A   T       K++S++  A  +T  +    + L  TP V + G I L
Sbjct: 449 SPKVITQNKKKAVISTKETTSFSKSLSTNGQAQEITFEEAEASLSLEVTPQVTNEGSISL 508

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            +     +     +A   P  + R+  T V + +G TIV+ G+   + ++   G+P L  
Sbjct: 509 ELDLLKQQFGTRPSAAAPPDKQERRVTTNVLVDNGSTIVIGGVYNYEKRESHSGVPFLKD 568

Query: 391 IPILGALFRNSRFNRE--ETEIFIAATPFLV 419
           IP++G LFR + +  E  + E+ I  TP +V
Sbjct: 569 IPLVGWLFR-TPYAPEVIKQELLIFLTPRIV 598


>gi|90416876|ref|ZP_01224805.1| putative general secretion pathway protein [marine gamma
           proteobacterium HTCC2207]
 gi|90331223|gb|EAS46467.1| putative general secretion pathway protein [marine gamma
           proteobacterium HTCC2207]
          Length = 629

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 21/220 (9%)

Query: 214 GFQHSITGSSSGPSKSFAADFG---GKFVSEGGDF---SVKGVLDRFSFETVLHALERAT 267
           G   ++TG      +  AA+ G    K ++  GDF   + KG+        ++ AL+   
Sbjct: 374 GLLATLTGLGISGVEPTAAELGLLPKKVMAVAGDFDSETGKGI------GLLIQALKTDG 427

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKT---VSSSTGA----TSVTTHDYGVVLHFTP 320
           + + L+ P++  +  + A+ + G +  ++T    SS+ G+    T++   + GV L   P
Sbjct: 428 STKILSTPSVVTLDNEEATLSVGEEVPFQTGSFTSSNNGSNNPFTTINREEVGVKLKVKP 487

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            +     + L I+ E S+   GV      S    +  T V +  G  ++L GL++D    
Sbjct: 488 QISKGDSVRLEIEQESSKVKSGVPGLQTTSKSTMQ--TNVLIQDGELLILGGLIEDQTGG 545

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               +PLL  IP+LG LFR++     ++ + +   P +++
Sbjct: 546 SATKVPLLGDIPLLGRLFRSTSKADSQSVLMMFIRPTIIR 585


>gi|301166568|emb|CBW26144.1| putative general secretion pathway protein D [Bacteriovorax marinus
           SJ]
          Length = 765

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 33/242 (13%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSVTTHDYGV--V 315
           ++ A+        LA P + A+  + A F  G      +  +++ G++SV+     V   
Sbjct: 495 LITAIASNAGTNVLATPQIMALDNEEAVFEVGESIPTPERTNAANGSSSVSIKQQKVAMT 554

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--------YRVRKADTTVELPSGGT 367
           L  TP V    ++   I+ ++ + +   ++  +PS           R A T+V +    T
Sbjct: 555 LKITPQV---NKVTRFIKLKIDQKIDDFSSRSLPSGVQSDGVATTTRSAVTSVVVRDRDT 611

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV------KP 421
           I + GL++D    +   +PLL  IP+LG LF+N+R + E+  +    TP ++        
Sbjct: 612 IAMGGLMRDKETDVTSKVPLLGDIPVLGWLFKNTRKSVEKLNLLFFLTPKIIDVYKTANA 671

Query: 422 VAMRD-LSRPDDHYSV---EDD-----AKAFFFNRVNKIYGP----KEASEVEGQNYKGA 468
           V ++D L+R   H      E D     AK  +     +  GP    +EA E + +N +  
Sbjct: 672 VNVQDQLNRRSTHLKNALGEKDPFATTAKGLYEKAKKQEQGPLYDQEEADEYKRENEEQG 731

Query: 469 IG 470
           IG
Sbjct: 732 IG 733


>gi|254373092|ref|ZP_04988581.1| hypothetical protein FTCG_00669 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570819|gb|EDN36473.1| hypothetical protein FTCG_00669 [Francisella novicida GA99-3549]
          Length = 593

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 111/261 (42%), Gaps = 27/261 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K+V+N ++I   DQV ++  I EV R    ++GF + +    SG        F       
Sbjct: 333 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVV-DPSGRVNIGLDTFNSNPNPA 390

Query: 242 GGDFSVKGVLDRF---------------SFETVLHALERATAIRTLAEPTLTAISGQSAS 286
            G       +D F                 +  + ALE  +    +A P L   + Q A 
Sbjct: 391 PGPTPTPTPVDTFVGTTAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA- 449

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
           F   G+ +    ++++GA +V   +  + L  TP +   G I + I   V++  +G + G
Sbjct: 450 FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGASPG 507

Query: 347 DMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
             P         + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG LF 
Sbjct: 508 KTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFS 567

Query: 400 NSRFNREETEIFIAATPFLVK 420
            ++   +++E+ I  TP +++
Sbjct: 568 YTKITDQDSELLIFITPKIIE 588


>gi|91786687|ref|YP_547639.1| type II and III secretion system protein [Polaromonas sp. JS666]
 gi|91695912|gb|ABE42741.1| type II and III secretion system protein [Polaromonas sp. JS666]
          Length = 717

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           Q  +    G  L    ++S+GATS+      + L  TP +   G I L +  +V++  +G
Sbjct: 576 QVKALIEQGTELPYQQATSSGATSIAFRKANLKLEVTPQITPEGNIILNV--DVNKDSVG 633

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
               +  +   +   T V + +GGT+V+ G+ + + ++ +  +PLL  +P +G LF+   
Sbjct: 634 RATANGFAIDTKHIQTQVLVENGGTVVIGGIFEQNDREDETKVPLLGDLPAIGNLFKTKT 693

Query: 403 FNREETEIFIAATP-FLVKPVAMR 425
               ++E+ +  TP  L    A+R
Sbjct: 694 RTASKSELLVFITPKMLTNGAALR 717


>gi|289625539|ref|ZP_06458493.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330866897|gb|EGH01606.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 775

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G         +    S++T  +SV 
Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 630

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS         D    P    R   T V   SG
Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSTADTNSTNNDANGNPRISTRSVATQVAAQSG 690

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF ++  ++  TE+ +  TP ++
Sbjct: 691 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI 744


>gi|171912205|ref|ZP_02927675.1| general secretion pathway protein D [Verrucomicrobium spinosum DSM
           4136]
          Length = 759

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 20/190 (10%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------VTTHDY 312
           L+ LE +     L  P +T ++ + A+ ++G Q      + S+G  S       V+   Y
Sbjct: 530 LNTLEESDRFHVLQRPYVTTLNHKKATISTGQQLAIPGQTYSSGIGSDPDTNGFVSNTQY 589

Query: 313 ---GVVLHFTPTVLSPGRIGLR-IQTEVS-EPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
               + L   P +     + L  +Q  +       ++   +P+   +    TV +P+G T
Sbjct: 590 IPAELKLDIVPHIYDKNEVKLEFVQQNLDIASYTTISGNQVPNLSTQTLSNTVVVPNGAT 649

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-------- 419
           I+L GL+ +  +  K G+P+LS+IP++  LF ++   +E  E+ I   P +V        
Sbjct: 650 IILGGLITERDRNNKSGVPVLSRIPLVKHLFGSTAKTKERRELMIFVQPIIVASDDSIAQ 709

Query: 420 KPVAMRDLSR 429
           K V + +L+R
Sbjct: 710 KQVPIENLNR 719


>gi|42523102|ref|NP_968482.1| general secretion pathway protein D [Bdellovibrio bacteriovorus
           HD100]
 gi|39575307|emb|CAE79475.1| general secretion pathway protein D [Bdellovibrio bacteriovorus
           HD100]
          Length = 765

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 16/174 (9%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSSTGATSVTTHDYGV 314
           ++ L+ A     L+ P L  +  Q      G     G+++    +S T   +    D  +
Sbjct: 537 INFLKTAKKANILSTPQLMTLDNQEGELEVGDKVVVGENVQNVGTSGTTVRTPQFEDATI 596

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--------YRVRKADTTVELPSGG 366
            L   P  +SP    +R+  E+ + V  ++    P            R   T + + +G 
Sbjct: 597 KLAIKP-FISPASNQIRM--EIKQQVAQLSTASTPKAFQDSTQPLAKRSLKTVINVNNGD 653

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           T+VL GL+K+  Q+    +PLL  IPI+G LF++    +++T + +  TP +V+
Sbjct: 654 TVVLGGLMKEQDQESVTKVPLLGDIPIIGWLFKSRTIVKDKTNMVVFLTPKIVR 707


>gi|260775597|ref|ZP_05884494.1| MSHA biogenesis protein MshL [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608778|gb|EEX34943.1| MSHA biogenesis protein MshL [Vibrio coralliilyticus ATCC BAA-450]
          Length = 545

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 20/190 (10%)

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------- 302
           V+   SF+ V+  +     +  L+ P +TA + Q A    G    + T  S+        
Sbjct: 332 VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDSYFVTDFSTNVDTSSTT 391

Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP-- 349
                   +T    G+ L  TP + + G + L +   V        E   G +   +P  
Sbjct: 392 STTSTDIELTPFFSGISLDVTPQIDNDGSVLLHVHPAVIDVTEENKEITNGTSTVSLPLA 451

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +  +R++D+ +    G  +V+ GL+K +       +P L  +P LG LFRN+    E+TE
Sbjct: 452 TSSIRESDSVIRAQDGDVVVIGGLMKSNTLDRTSKVPFLGDVPALGHLFRNTTQYTEKTE 511

Query: 410 IFIAATPFLV 419
           + I   P +V
Sbjct: 512 LVILLKPTVV 521


>gi|329120652|ref|ZP_08249315.1| type IV pilus biogenesis protein PilQ [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327460876|gb|EGF07210.1| type IV pilus biogenesis protein PilQ [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 695

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLL 374
           +  TP +   G+I + I+  V++  +  N G   P    ++ DT   + +GGT++L G+ 
Sbjct: 584 MTVTPQITPDGQIIMDIK--VNKDSVNRNCGASEPCIDTKRLDTKAMVENGGTLILGGIY 641

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +++  +    +PLL  IP++G LF++   N  + E+ I  TP +V  V 
Sbjct: 642 EEENSEGVSKVPLLGDIPVVGNLFKSRSRNTSKKELLIFITPRIVDNVG 690


>gi|312795821|ref|YP_004028743.1| Fimbrial assembly protein pilQ precursor [Burkholderia rhizoxinica
           HKI 454]
 gi|312167596|emb|CBW74599.1| Fimbrial assembly protein pilQ precursor [Burkholderia rhizoxinica
           HKI 454]
          Length = 655

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 44/71 (61%)

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+   ++  T+VE+ +GGT+ + G+   D +Q +  +P+L  IP++GALFR+   +   +
Sbjct: 479 PAIHTKRVQTSVEVENGGTVAIGGIYSQDDRQDEARVPILGDIPLIGALFRHRIRSDRHS 538

Query: 409 EIFIAATPFLV 419
           E+ I  TP +V
Sbjct: 539 ELIILITPTVV 549


>gi|325109742|ref|YP_004270810.1| type II and III secretion system protein [Planctomyces brasiliensis
            DSM 5305]
 gi|324970010|gb|ADY60788.1| type II and III secretion system protein [Planctomyces brasiliensis
            DSM 5305]
          Length = 1315

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 15/180 (8%)

Query: 255  SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----- 309
            S   ++ AL     ++ L+ PT+  +  Q A    G Q       + TG   + T     
Sbjct: 997  SVSVLIRALSAKRNVQILSRPTIRTLDNQLAQILVGQQVPIVDGVTITGTIGIATPQIVQ 1056

Query: 310  HDYGVVLHFTPTVLSPGRIGLR-IQTEVSEPVIGV---------NAGDMPSYRVRKADTT 359
               G++L  TP +   G I +  + T+ S    GV         +  + P   +  A  T
Sbjct: 1057 QQVGIILAVTPRISPDGSIVMETVATKSSLSDEGVPIFTDIETGSVIESPIINLTTAQAT 1116

Query: 360  VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            V +P+G T+VL G++  D    +  +P +  +PILG  FR    +   TE+ I  TP ++
Sbjct: 1117 VSVPNGQTVVLGGMITKDEVSFRRNVPWIGDLPILGIPFRYEGKSTRRTELLIFLTPRVI 1176


>gi|255531011|ref|YP_003091383.1| type II and III secretion system protein [Pedobacter heparinus DSM
           2366]
 gi|255343995|gb|ACU03321.1| type II and III secretion system protein [Pedobacter heparinus DSM
           2366]
          Length = 655

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 14/176 (7%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATSVTTH 310
           +F   L+ALE    I     P L  ++G +A+ + G    Y T    V SS    +V T 
Sbjct: 480 NFYVKLNALEANNNIEIRQVPKLATLNGHTANLSIGTTRYYVTKTQNVFSSVNTQTVFTE 539

Query: 311 -----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                D  + +  +P V    ++ L+I+ E+S+ +    A   P     K ++ +   + 
Sbjct: 540 QFNKVDANLAIGISPVVSGDDQVTLKIKVEISDFIGTPPANAPPPTSTSKFESIIRAHNE 599

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             IVL G+ + +      G+PLLS+IP+L  +F     +RE+T+  +    F +KP
Sbjct: 600 DMIVLGGMERSEKSDSGSGVPLLSRIPVLKWIFS----SREQTKSKVVTLVF-IKP 650


>gi|226327391|ref|ZP_03802909.1| hypothetical protein PROPEN_01261 [Proteus penneri ATCC 35198]
 gi|225203917|gb|EEG86271.1| hypothetical protein PROPEN_01261 [Proteus penneri ATCC 35198]
          Length = 367

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 4/150 (2%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P LT    ++AS   G +  Y  VS     T V   +  + +  TP +    +I L 
Sbjct: 220 IASPRLTTAHEKTASIKQGTEIPY--VSRDNEITQVQFKEAVLGMEVTPIIQRNKKIRLI 277

Query: 332 IQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P I +  +  +  S   ++  T V +  G TI+L G+ +   Q+    IP LS
Sbjct: 278 LKISQNTPGIALVQSGSEHLSIDKQEISTEVAIRDGETIMLGGIFQQKQQEHTAKIPFLS 337

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP+LG LF + R      E+ I  TP L+
Sbjct: 338 SIPLLGVLFSHKRDQHSRHELVIFITPKLI 367


>gi|134294486|ref|YP_001118221.1| type IV pilus secretin PilQ [Burkholderia vietnamiensis G4]
 gi|134137643|gb|ABO53386.1| type IV pilus secretin PilQ [Burkholderia vietnamiensis G4]
          Length = 550

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 10/108 (9%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG--- 372
           L   P +   GR+ L +  +V++  IG      P+   +   T VE+  GGT+ + G   
Sbjct: 416 LEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVEDGGTVAIGGIYE 473

Query: 373 -LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L +DD+      +PLL +IP+LGALFR+   + +  E+ +  TP +V
Sbjct: 474 QLRRDDVTH----VPLLGRIPVLGALFRHRARSDQRNELVVFITPTVV 517


>gi|145588279|ref|YP_001154876.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046685|gb|ABP33312.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 353

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 14/237 (5%)

Query: 189 NIAGEDQVTLKVTIAEV----RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +I    Q+ ++  I E      R++  +IG Q ++ GS +    S   D GG  ++    
Sbjct: 116 HINSPSQILIEARIVEADERFARELGVKIGQQANLAGSRTDKKISANLDLGGAGLNGFNP 175

Query: 245 FSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
            +V   L      R   +  L ALE     + L+ P +       A+   G +  Y+T S
Sbjct: 176 ATVAATLLSKDASRL-LQMELSALESEGQGKILSNPRIMTGDQVKATIEQGTELPYQTTS 234

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            +   + +      + L   P +   G+I + +   +++  IG+      +   +   + 
Sbjct: 235 QN--GSKLQFRKANLRLEVLPKIHPDGKISMLVG--INKDTIGMKTEQGYAIDTKSLSSE 290

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           V + +GGT ++ G+ +   ++ +  IPLL  IP+ G LFR+    +++TE+ +  TP
Sbjct: 291 VTVENGGTAIIGGIYQTTEREDEVKIPLLGDIPLFGHLFRHKSKLKDKTELLVFLTP 347


>gi|332994893|gb|AEF04948.1| pilus (MSHA type) biogenesis protein MshL [Alteromonas sp. SN2]
          Length = 557

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 101/253 (39%), Gaps = 33/253 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFS 246
           QV L+  I EV  +     G+Q  I        TG++     + A   G    +  G  +
Sbjct: 287 QVILEARILEVELND----GYQQGINWNEILANTGNTDFSLSTTAGTLGNDISATLGGVT 342

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT- 305
               L++  F  VL  L     ++ L+ P +TAI+ Q A    G    + T  SS     
Sbjct: 343 SLAFLNK-DFSGVLSLLSTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSDSTVT 401

Query: 306 ----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD----- 347
                      +T    G+ L  TP +   G + L +     E +E    V   D     
Sbjct: 402 STTTSISPDIELTPFFSGIALDVTPQIDDKGTVLLHVHPSVIETAEQQKVVTMDDEQIVL 461

Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +    +R++DT +   SG  +V+ GL++     +    PLL  IP+ G LF+N + +  
Sbjct: 462 PLAQSTIRESDTIIRAGSGEIVVIGGLMQTSQTDVVSKTPLLGDIPLFGELFKNRQVSET 521

Query: 407 ETEIFIAATPFLV 419
           + E+ I   P +V
Sbjct: 522 KKELIILLKPTVV 534


>gi|237801193|ref|ZP_04589654.1| general secretion pathway protein D [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024050|gb|EGI04107.1| general secretion pathway protein D [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 333

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALER    + L+ P+L  ++ Q A    G         +    S++T  +SV 
Sbjct: 129 NLQVALRALERNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 188

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS      +  D    P    R   T V   SG
Sbjct: 189 YVQTGVILDVVPRINPGGLVYMDIQQQVSNADNNASNNDANGNPRISSRSVSTQVAAQSG 248

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            TI+L GL+K D  +  + +P L +IP L  LF  +  ++  TE+ +  TP ++
Sbjct: 249 QTILLGGLIKQDNAETVDAVPYLGRIPGLRWLFGTTSKSKGRTELIVLITPRVI 302


>gi|251788920|ref|YP_003003641.1| general secretion pathway protein D [Dickeya zeae Ech1591]
 gi|247537541|gb|ACT06162.1| general secretion pathway protein D [Dickeya zeae Ech1591]
          Length = 716

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 32/192 (16%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG---------------GQHLYKT 297
           R ++  +L AL        LA P++  +    A+F  G               G +++ T
Sbjct: 478 RGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGQQTTMGSGSNIFNT 537

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVR 354
           V   T          G+ L   P +     + L+I+ EVS    G    N+    ++  R
Sbjct: 538 VERKT---------VGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNSSTNSSLGVTFNTR 588

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             +  V + +G T+V+ GLL     +    +PLL  IP LG+LFR+   +  +  + +  
Sbjct: 589 TVNNAVMVTNGETVVVGGLLDKSTIETNNKVPLLGDIPWLGSLFRSKSQSMSKRNLML-- 646

Query: 415 TPFLVKPVAMRD 426
               ++P  +RD
Sbjct: 647 ---FLRPTIIRD 655


>gi|254000203|ref|YP_003052266.1| type IV pilus secretin PilQ [Methylovorus sp. SIP3-4]
 gi|253986882|gb|ACT51739.1| type IV pilus secretin PilQ [Methylovorus sp. SIP3-4]
          Length = 714

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           + ++ P +T  + + A    G +  Y   SSS GATSV   D  + L  TP V    +I 
Sbjct: 561 KVVSSPRVTTANQKKAQIQQGTKIPYLRASSS-GATSVQFVDATLSLEVTPQVTPDDKII 619

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           + +   + +  +G     +PS   +  DT V + +G T VL G+ +   +   + +P   
Sbjct: 620 MDL--TIKKDRVGQIFSGVPSIETQSVDTQVLVSNGETAVLGGIYEQTERNDVDKVPFFG 677

Query: 390 KIPILGALFRNSRFNREETEIFIAATP 416
            IP LG  F+      ++TE+ I  TP
Sbjct: 678 DIPFLGNAFKRRVKQNDKTELLIFITP 704


>gi|260778653|ref|ZP_05887545.1| type III secretion system outer membrane pore YscC [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604817|gb|EEX31112.1| type III secretion system outer membrane pore YscC [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 484

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 24/221 (10%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----AADFGGKFVSEGGDFSVKGV 250
           + + VTI +V      Q+G   S      G S +F     ++D     +   G+F V+  
Sbjct: 263 IEVSVTIIDVDTSDFNQLGIDWSAAAKFGGGSVTFNQGSLSSDNFSTVIGNTGNFMVR-- 320

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTT 309
                    L+ALE+ +  + L+ P++  ++   A          K          SVTT
Sbjct: 321 ---------LNALEQNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKIEGEKVAKLESVTT 371

Query: 310 HDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSG 365
              G +L  TP +++     ++ L +  +  +    V++ D +P     +  T   L +G
Sbjct: 372 ---GSLLRVTPRLVNENNFKKVMLSLNIQDGQQAKPVSSKDPLPQVENSEIATQATLKTG 428

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +++L G ++D    ++  IPLL  IP+LG LFR++  +++
Sbjct: 429 ESLLLGGFVQDKDHTVENKIPLLGDIPLLGGLFRSTDHSKQ 469


>gi|115376293|ref|ZP_01463533.1| type IV pilus secretin PilQ subfamily, putative [Stigmatella
           aurantiaca DW4/3-1]
 gi|310823667|ref|YP_003956025.1| type IV pilus secretin PilQ [Stigmatella aurantiaca DW4/3-1]
 gi|115366718|gb|EAU65713.1| type IV pilus secretin PilQ subfamily, putative [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396739|gb|ADO74198.1| Type IV pilus secretin PilQ [Stigmatella aurantiaca DW4/3-1]
          Length = 906

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 5/156 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E    ++T++ P +T +   +A  + G    + + +S+ GA + T  +  + L  T
Sbjct: 739 LSAAENDGYVKTISAPKVTTLDNNTARISQGVSIPF-SQTSANGANT-TFIEARLSLEVT 796

Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G I + I  + ++P      A   P+ + ++A+T V +  G T V+ G+     
Sbjct: 797 PHITQDGSILMNIIAQNNQPDAANTGANGQPAIQRKEANTQVLVKDGDTTVIGGIYVRRG 856

Query: 379 QQLKEGIPLLSKIPILGALFRNS--RFNREETEIFI 412
                 IP  SKIP+LG  FR +  R +R+E  IFI
Sbjct: 857 STNHASIPFFSKIPVLGFFFRQTTERDDRQELLIFI 892


>gi|189424524|ref|YP_001951701.1| type II and III secretion system protein [Geobacter lovleyi SZ]
 gi|189420783|gb|ACD95181.1| type II and III secretion system protein [Geobacter lovleyi SZ]
          Length = 769

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 6/121 (4%)

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVN-AGDMPSYRVRKADTTVELPS 364
           D GV ++  PT+     + +++  EVS     E V G + A  + +   R  DT + L  
Sbjct: 468 DVGVKVNAEPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTIGTRNLDTVLSLKD 527

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T V+ GL+       K+ I LL  IP++G L  NS+ + ++TE+ +A TP LV+ V +
Sbjct: 528 GETSVIGGLISHSNSDSKQKIFLLGDIPLIGPLLSNSKTDNDKTELILAITPRLVRGVTV 587

Query: 425 R 425
           +
Sbjct: 588 Q 588


>gi|262066840|ref|ZP_06026452.1| general secretion pathway protein D [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379452|gb|EFE86970.1| general secretion pathway protein D [Fusobacterium periodonticum
           ATCC 33693]
          Length = 514

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 23/240 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           QV +   I ++  ++ +++GF      + +S    S  A   GK     G  S   ++ +
Sbjct: 269 QVKISSQILDISNNLFEELGFDWVYKQNVASEERNSLTAIILGK-AGLNGIGSTLNIVRQ 327

Query: 254 FS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           F+       T L+ LE    +   + PTL   SG+   F    + +    ++        
Sbjct: 328 FNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENKNDRH 387

Query: 309 TH----DYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV 353
           T     + G+++   P +     I L I  E+S+         +  +N+G   S    +V
Sbjct: 388 TEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDINSGTYNSEGGSKV 447

Query: 354 RKADTT-VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +A TT V +  G TI++ GL K   Q ++  IP+L  IPI+   F+N+   RE ++++I
Sbjct: 448 GRALTTKVRVKDGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENSDMYI 507


>gi|71909017|ref|YP_286604.1| type II and III secretion system protein [Dechloromonas aromatica
           RCB]
 gi|71848638|gb|AAZ48134.1| type II and III secretion system protein [Dechloromonas aromatica
           RCB]
          Length = 594

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 16/128 (12%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTI 368
            V L+  PT+ S  R       EV +P   +    +    P  R R+ ++ + + SG   
Sbjct: 454 AVTLNVRPTITSVAR-------EVQDPNPDLKKNSISNLVPVIRTREIESIMRVASGNIA 506

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +L GL++D I    + +PLL +IPI G L  N     ++TE+ I      ++PV ++D S
Sbjct: 507 ILGGLMEDKIDYQTQRVPLLGQIPIAGELVNNRNNAAQKTELVI-----FLRPVVIKDAS 561

Query: 429 RPDDHYSV 436
              D+ ++
Sbjct: 562 LEGDYANM 569


>gi|242238911|ref|YP_002987092.1| general secretion pathway protein D [Dickeya dadantii Ech703]
 gi|242130968|gb|ACS85270.1| general secretion pathway protein D [Dickeya dadantii Ech703]
          Length = 714

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 12/179 (6%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
           ++  +L AL   +    LA P++  I    A+F  G +    T S +T A    ++V   
Sbjct: 482 NWSMLLTALSSNSKNDVLATPSIVTIDNMEATFNVGQEVPVLTGSQTTSADNIYSTVERK 541

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGT 367
             G+ L   P +     + L+I+ EVS      ++       ++  R  +  V + +G T
Sbjct: 542 TVGIKLKVKPQINEGDSVLLQIEQEVSSVADSSSSTSSDLGATFNTRTVNNAVMVTNGET 601

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +V+ GLL     +    +PLL  IP+LG LFR+      +  + +      ++P  +RD
Sbjct: 602 VVVGGLLNKSTVETDSKVPLLGDIPVLGNLFRSKSLTVSKRNLML-----FLRPTIIRD 655


>gi|163781944|ref|ZP_02176944.1| putative type II secretion system protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883164|gb|EDP76668.1| putative type II secretion system protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 518

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 113/254 (44%), Gaps = 33/254 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI-------TGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           QV ++  I E+    + Q G   S        TG++   S++ +       +  GG FS+
Sbjct: 274 QVLIEAKIVEIALSDVFQYGIDWSTFFRDVFGTGANVTLSQTLS-------IPTGGFFSL 326

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGA 304
             V   FS  T+++AL     + TL+ P +   +GQ+A   +G    +   + V+ +   
Sbjct: 327 NVVSSDFS--TLVNALATYGKVYTLSNPRIMVSNGQTALIATGIVTPFFERQAVTITGTT 384

Query: 305 TSVTTHDY-------GVVLHFTPTVLSPGRIGL-------RIQTEVSEPVIGVNAGDMPS 350
           T+    +        GV+L  TP +   G I +       R++   +  V G    + P 
Sbjct: 385 TTQIQENIVKTNVLEGVLLGVTPYIDDNGSIVMNIIPVATRLEGSKTLEVNGQVLAEAPI 444

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +++  T V + +G  +V+ GL+ D     +  +P L  IP+LG LF++ R  +E+ E+
Sbjct: 445 LNIKETGTIVRVRNGELVVIGGLIGDVRSVQERKVPGLGDIPVLGYLFKSKRTVKEKREL 504

Query: 411 FIAATPFLVKPVAM 424
            I   P ++  + +
Sbjct: 505 IIFLRPRIIDNIGL 518


>gi|116747987|ref|YP_844674.1| type IV pilus secretin PilQ [Syntrophobacter fumaroxidans MPOB]
 gi|116697051|gb|ABK16239.1| type IV pilus secretin PilQ [Syntrophobacter fumaroxidans MPOB]
          Length = 636

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 12/184 (6%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
              +  + ALE A  IR +A P +  ++   A  + G Q  Y  V  +  A+++T  D+ 
Sbjct: 460 LKVDLTISALETADEIRIMAAPRVLTMNNVKAVISQGVQIPYLKVGDT--ASNITGTDFK 517

Query: 314 ---VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIV 369
              + L  TP +    ++ + I+ +  EP   V  A   P    RK  T + +  G  IV
Sbjct: 518 DAVLELAVTPHITPDHKVRMTIEAKQDEPSSTVTGAQGQPGIDTRKISTELLVDDGNIIV 577

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + G++++  +  K   P LS +PILG LF+++  + +  EI I   P +V      D+++
Sbjct: 578 IGGIIRNRDEAKKTATPGLSDVPILGRLFKSNEVDAQRNEILIFICPKIV------DVTK 631

Query: 430 PDDH 433
           P D 
Sbjct: 632 PSDR 635


>gi|167915591|ref|ZP_02502682.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 112]
          Length = 322

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 161 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 217

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 218 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 273

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 274 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 322


>gi|33151657|ref|NP_873010.1| competence protein E [Haemophilus ducreyi 35000HP]
 gi|33147878|gb|AAP95399.1| competence protein E [Haemophilus ducreyi 35000HP]
          Length = 419

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 1/162 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   +  +A P L   + + AS   G +  Y   +      ++   +  + L  T
Sbjct: 253 LTALEQENNVEIIASPRLLTTNKKPASIKQGAEIPYVLYNRKDEVKNIEFKEAVLGLQVT 312

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P + +  +I L +    + P +   A + + +   ++ +T V    G TIVL G+ +   
Sbjct: 313 PHISADNQILLDLVVTQNSPNLNNTAVNGLITIDKQELNTQVFAKHGETIVLGGIFQHLT 372

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + ++ +PLL  IP+L  LF +S     + E+ I  TP+LV+
Sbjct: 373 AKGEDRVPLLGSIPVLKKLFSHSTDKITKRELVIFVTPYLVQ 414


>gi|239814080|ref|YP_002942990.1| general secretion pathway protein D [Variovorax paradoxus S110]
 gi|239800657|gb|ACS17724.1| general secretion pathway protein D [Variovorax paradoxus S110]
          Length = 774

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 28/244 (11%)

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           PS        GK    GG + +  + + F+ +   + L     + TL       + GQ+ 
Sbjct: 479 PSSGLNLGIAGKI---GGQYILGAIANFFNSDGDANVLSTPNLL-TLDNEEAKIVIGQNV 534

Query: 286 SFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
            F +G    Y + S S G    TT    D G+ L   PT+   G + + I  E S  V G
Sbjct: 535 PFVTG---QYASTSGSVGINPFTTVERKDVGLTLRVRPTINENGTVKMTIFQETST-VDG 590

Query: 343 --VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +N  + P+   R  +++V +  GG ++L GLL DD     E +P+   IP+LG LF+N
Sbjct: 591 NTINNPNGPTTNKRSIESSVLVEDGGLVMLGGLLSDDYGNTIEKVPVAGDIPVLGNLFKN 650

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
               R ++ + +      ++P  MRD +            +AF ++R ++I G ++ ++ 
Sbjct: 651 EIRTRNKSNLMM-----FLRPAVMRDGA----------STEAFAYDRYDEIRGMQQRTQP 695

Query: 461 EGQN 464
              N
Sbjct: 696 NTDN 699


>gi|74317318|ref|YP_315058.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
           25259]
 gi|74056813|gb|AAZ97253.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
           25259]
          Length = 667

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 7/120 (5%)

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRV--RKADTTV 360
           +V   D G+     P +     + +++  EVS   +G   V       YRV  R A TT+
Sbjct: 442 TVNYLDVGIKFEVEPLISLNDEVTIKVALEVSS--LGQKSVTKSGSEVYRVGTRNASTTL 499

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G T  LAGL+ D+ ++   GIP   +IP +G LF +   + ++TEI +  TP +V+
Sbjct: 500 ALRDGETQALAGLISDEERETVNGIPGFGRIPAIGRLFASKSNSTDKTEIVLLITPHIVR 559


>gi|254253479|ref|ZP_04946797.1| Type II secretory pathway component HofQ [Burkholderia dolosa
           AUO158]
 gi|124896088|gb|EAY69968.1| Type II secretory pathway component HofQ [Burkholderia dolosa
           AUO158]
          Length = 549

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P     GR+ L +  +V++  +G      P+
Sbjct: 390 GSELPYQAKVGNGVSGVQFRRATLKLEVEPQSTPDGRVVLDL--DVTKDSVGEPTAAGPA 447

Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
              +   T VE+  GGT+ + G    L +DD+ +    +PLL KIP+LGALFR+     +
Sbjct: 448 IHTKHVQTRVEVEDGGTVAIGGIYEQLNRDDVTR----VPLLGKIPVLGALFRHQARRDQ 503

Query: 407 ETEIFIAATPFLV 419
            +E+ +  TP +V
Sbjct: 504 RSELVVFITPTVV 516


>gi|238764026|ref|ZP_04624981.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia kristensenii ATCC 33638]
 gi|238697697|gb|EEP90459.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia kristensenii ATCC 33638]
          Length = 481

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 12/212 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ + VTI +V    + Q+G   S + S  G   SF +  G    S  G  +V G  D  
Sbjct: 255 QIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNS--GEPQNSANGFSTVIG--DSG 310

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +F   L+AL++ +  R L+ P++  ++   A          K            T   G 
Sbjct: 311 NFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKLQGDKVAKLESITS--GS 368

Query: 315 VLHFTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           +L  TP ++    +      L IQ    +  I  ++  +P  +     T   L  G +++
Sbjct: 369 LLRVTPRMIDADGVKEVLLNLNIQDGQQQASIS-SSEPLPEIQNSDISTQATLRVGQSLL 427

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           L G ++D   + +  IPLL  IP+LG LFRN+
Sbjct: 428 LGGFIQDKQIESQNKIPLLGDIPLLGGLFRNT 459


>gi|254785258|ref|YP_003072686.1| MSHA type biogenesis protein, MshL [Teredinibacter turnerae T7901]
 gi|237687142|gb|ACR14406.1| MSHA type biogenesis protein, MshL [Teredinibacter turnerae T7901]
          Length = 570

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 109/249 (43%), Gaps = 24/249 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH-SITGS---SSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L+  I EV+ +   + G    +ITG+   +S  S     + G K         + GV
Sbjct: 294 QVVLETKIIEVQLNDGYEAGVNWGAITGALGVASDSSLVMTNNDGVKSKIRTTQNLLSGV 353

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---------VSSS 301
           L+    E +L+ LE    ++ L+ P ++ ++ Q A    G    + T          S+ 
Sbjct: 354 LNVTRIEDLLNLLETQGNVQVLSSPRISTVNNQKAIIRVGTDEFFVTGITNNTTTTASNI 413

Query: 302 TGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMP-----SY 351
             +  V    +  G+ L  TP +   G + + +    ++V + +  ++ GD+      + 
Sbjct: 414 QNSPEVLLDSFFSGIALDVTPQIAEDGDVIIHVHPLVSKVQDQLKDISIGDLDYSLPLAL 473

Query: 352 R-VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           R VR++D+ V   +G  +VL GL+++    +    P L  IP +  LF+     + +TE+
Sbjct: 474 RDVRESDSIVRASNGQVVVLGGLMQETTSDVATKRPFLGDIPGVNVLFKGRAKRKVKTEL 533

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 534 VILMRPIVV 542


>gi|237738589|ref|ZP_04569070.1| general secretion pathway protein D [Fusobacterium sp. 2_1_31]
 gi|229424072|gb|EEO39119.1| general secretion pathway protein D [Fusobacterium sp. 2_1_31]
          Length = 514

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 23/240 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           QV +   I ++  ++ +++GF      + +S    S  A   GK    G   S+  ++ +
Sbjct: 269 QVKISSQILDISNNLFEELGFDWVYRQNVASEERNSLTAIILGKAGLNGVGSSL-NIVRQ 327

Query: 254 FS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           F+       T L+ LE    +   + PTL   SG+   F    + +    ++        
Sbjct: 328 FNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENKNDRH 387

Query: 309 TH----DYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV 353
           T     + G+++   P +     I L I  E+S+         +  +N+G   S    +V
Sbjct: 388 TEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDINSGTYNSEGGSKV 447

Query: 354 RKADTT-VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +A TT V + +G TI++ GL K   Q ++  IP+L  IPI+   F+N+   RE ++++I
Sbjct: 448 GRALTTKVRVKNGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENSDMYI 507


>gi|330966297|gb|EGH66557.1| general secretion pathway protein D [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 775

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G         +    S++T  +SV 
Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 630

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS      N  D    P    R   T V   SG
Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSNADTNTNNNDANGNPRISSRSVSTQVAAQSG 690

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++
Sbjct: 691 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTTKSKGRTELIVLITPRVI 744


>gi|312883863|ref|ZP_07743580.1| hypothetical protein VIBC2010_01233 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368321|gb|EFP95856.1| hypothetical protein VIBC2010_01233 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 619

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 16/233 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248
           + ++ + ++I ++  + L Q+G      G S G +K    +   D     V  G   +  
Sbjct: 287 QSRIEVALSIVDISANNLSQLGVDWR-AGVSVGNNKIVDINTTGDVTNGDVLLGSGQTFN 345

Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            +LD  +   +L   + LE   + + ++ PTL       A  ++      K V   T A 
Sbjct: 346 SLLDATNLNFLLAQINLLESQGSAQVVSRPTLLTQENVEAVLSNSTTFYVKLVGRETAAL 405

Query: 306 SVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              T  YG +L   P ++         I L +  E    +       +PS R  +  T  
Sbjct: 406 DEVT--YGTLLRIVPRIVGDRFAERPEINLSLNLEDGAQIPDNVIDGVPSIRKTEISTLA 463

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR-FNREETEIFI 412
            +  G ++++ G+ +D+I Q    +PLL  IP LGALFR++    R    +FI
Sbjct: 464 TVKQGQSLLIGGVYRDEISQQLRKVPLLGDIPYLGALFRSTNDITRRTVRMFI 516


>gi|294781789|ref|ZP_06747122.1| general secretion pathway protein D [Fusobacterium sp. 1_1_41FAA]
 gi|294481899|gb|EFG29667.1| general secretion pathway protein D [Fusobacterium sp. 1_1_41FAA]
          Length = 514

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 23/240 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           QV +   I ++  ++ +++GF      + +S    +  A   GK     G  S   ++ +
Sbjct: 269 QVKISSQILDISNNLFEELGFDWVYRQNIASEERNTLTAIILGK-AGLNGVGSTLNIVRQ 327

Query: 254 FS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           F+       T L+ LE    +   + PTL   SG+   F    + +    ++        
Sbjct: 328 FNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENKNDRH 387

Query: 309 TH----DYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV 353
           T     + G+++   P +     I L I  E+S+         +  VN+G   S    +V
Sbjct: 388 TEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDVNSGTYNSEGGSKV 447

Query: 354 RKADTT-VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +A TT V + +G TI++ GL K   Q ++  IP+L  IPI+   F+N+   RE ++++I
Sbjct: 448 GRALTTKVRVKNGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENSDMYI 507


>gi|330875847|gb|EGH09996.1| general secretion pathway protein D [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 775

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G         +    S++T  +SV 
Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 630

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS      N  D    P    R   T V   SG
Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSNADTNTNNNDANGNPRISSRSVSTQVAAQSG 690

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++
Sbjct: 691 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTTKSKGRTELIVLITPRVI 744


>gi|254428336|ref|ZP_05042043.1| type IV pilus secretin PilQ subfamily, putative [Alcanivorax sp.
           DG881]
 gi|196194505|gb|EDX89464.1| type IV pilus secretin PilQ subfamily, putative [Alcanivorax sp.
           DG881]
          Length = 693

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 9/167 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            E  L ALE       +A P +     Q A   SG Q  ++ V++S+GATS+   +  + 
Sbjct: 528 IELELSALEAEGHGELVATPKVLTADQQPAVIASGQQVPFE-VATSSGATSIDFVEAELR 586

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +   G I + ++          ++    +    + +T+V +  G T+VL G+ +
Sbjct: 587 LEVTPHITPDGNIIMTLKVNND----SFSSDGSAAINTNRVETSVLVNDGETVVLGGIFQ 642

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFLVK 420
            +        P L  +P +G LFR +  R N++E  IFI  TP L+K
Sbjct: 643 QEKINSVTKTPFLGDLPWIGNLFRKTVNRDNKQELLIFI--TPRLMK 687


>gi|167724326|ref|ZP_02407562.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei DM98]
          Length = 308

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 147 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 203

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 204 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 259

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 260 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 308


>gi|304321270|ref|YP_003854913.1| general secretion pathway protein D [Parvularcula bermudensis
           HTCC2503]
 gi|303300172|gb|ADM09771.1| general secretion pathway protein D [Parvularcula bermudensis
           HTCC2503]
          Length = 736

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 16/184 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           +  +L AL+  +    L  P++  +  +  +   G Q +      + G+        +  
Sbjct: 484 YGVLLSALQSDSQSNVLQVPSIVLLDNEEGTIQVG-QEVPVVTGEAVGSDFQGGFRQIER 542

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGT 367
            + G +L   P + +   + L++  EVS   +G  A D   P       D TV    G T
Sbjct: 543 KNIGNILQVKPQITAGNTVQLKLNLEVSS--LGAFAPDAQGPITNESILDLTVSAEDGQT 600

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +VL GL+  D +Q +  +P+L  IP+LG LF+    + +E+ + I      ++P  +RD 
Sbjct: 601 LVLGGLVDKDRRQTESKVPVLGDIPLLGNLFKGQAQSDQESTLMI-----FIRPTILRDA 655

Query: 428 SRPD 431
              D
Sbjct: 656 QAAD 659


>gi|62184688|ref|YP_219473.1| putative general secretion protein [Chlamydophila abortus S26/3]
 gi|62147755|emb|CAH63499.1| putative general secretion protein [Chlamydophila abortus S26/3]
          Length = 908

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    T   T      D G
Sbjct: 688 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIG 747

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L    T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 748 VNLVVASTIAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLVMSGH 806

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D   ++  G+PLL+ IP+L  LF  +   R++  I +   P ++
Sbjct: 807 IRDKTTKIVTGVPLLNSIPLLRGLFSRTIDQRQKRNIMMFIKPKVI 852


>gi|254447504|ref|ZP_05060970.1| type 4 fimbrial biogenesis protein PilQ [gamma proteobacterium
           HTCC5015]
 gi|198262847|gb|EDY87126.1| type 4 fimbrial biogenesis protein PilQ [gamma proteobacterium
           HTCC5015]
          Length = 721

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 2/142 (1%)

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSE 338
           + Q  +F   G  +    ++S+GA +V      + L  TP +    RI   L ++ +   
Sbjct: 574 ANQKEAFIEQGVEIPYLEAASSGAVTVAFKKAVLSLTATPQITPDDRIILDLNVKKDNVG 633

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            + G     +PS   R+ +T V + +G T+VL G+ + +       IP L  IP +G LF
Sbjct: 634 EIFGEGEIQVPSIDTREVETQVLVKNGETVVLGGIFEHETLDSVTKIPFLGDIPGIGRLF 693

Query: 399 RNSRFNREETEIFIAATPFLVK 420
           R       + EI I  TP +V+
Sbjct: 694 RREIKQNSKREILIFVTPKIVR 715


>gi|119475553|ref|ZP_01615906.1| Type II secretory pathway, component PulD [marine gamma
           proteobacterium HTCC2143]
 gi|119451756|gb|EAW32989.1| Type II secretory pathway, component PulD [marine gamma
           proteobacterium HTCC2143]
          Length = 558

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 115/288 (39%), Gaps = 27/288 (9%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKF 238
           ++++ +N   +    QV L+  I EV  +   Q G Q  S+ G+ +G +  F        
Sbjct: 261 AAREFLNRAEVIMRRQVVLEAKILEVELNDGYQTGIQWESMGGTLNGNTLDFGVSGSSPV 320

Query: 239 VSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
            S     +   V +    F  V+  LE   +++ L+ P ++ ++ Q A    G    +  
Sbjct: 321 SSNSVGGAFSAVYESVGDFSGVIELLETQGSVQVLSSPRISTVNNQKAVIKVGTDEFFVT 380

Query: 296 ---------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------- 339
                       ++S     +T    G+ L  TP +     I L I   +SE        
Sbjct: 381 EISNSTTTSTGATTSNPEIELTPFFSGIALDVTPQISDNDEIILHIHPSISEVRDQTKVI 440

Query: 340 VIGVNAGDMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            +G    ++P     +R+ D+ V   SG  +VL GL++        G P+L  +P +G L
Sbjct: 441 TLGDQTVEVPLALSTIRETDSIVYARSGQVVVLGGLMQTKSVDNNSGTPVLGNLPGVGHL 500

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD-----LSRPDDHYSVEDDA 440
           F   R    + E+ I   P ++ P  + D      SR D+   V D++
Sbjct: 501 FSQQRNKTVKNELVILLRPVIMGPSGLPDSLDTSRSRFDEFRRVLDNS 548


>gi|313847597|emb|CBY16585.1| putative general secretion protein [Chlamydophila psittaci RD1]
          Length = 907

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    T   T      D G
Sbjct: 687 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIG 746

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L    TV     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 747 VNLVVASTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLVMSGH 805

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++
Sbjct: 806 IRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 851


>gi|167820470|ref|ZP_02452150.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 91]
 gi|167828842|ref|ZP_02460313.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 9]
          Length = 315

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 154 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 210

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 211 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 266

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 267 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 315


>gi|160901009|ref|YP_001566591.1| type IV pilus secretin PilQ [Delftia acidovorans SPH-1]
 gi|160366593|gb|ABX38206.1| type IV pilus secretin PilQ [Delftia acidovorans SPH-1]
          Length = 716

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 99/215 (46%), Gaps = 13/215 (6%)

Query: 214 GFQHSITGSSSGPSKSFAADF----GGKF--VSEGGDFSV---KGVLDRFSFETVLHALE 264
           G+++++  S SG + + + +F      K   VS  G F++       +RF     L A+E
Sbjct: 500 GYENAVASSGSGGTVNTSGNFVNLPAAKLTGVSGTGSFALSIFNSAANRF-LALELSAME 558

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                + ++ P L       A    G ++ Y +V++  GAT++      + L  TP +  
Sbjct: 559 ADGQGKIISSPRLVTADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVTPQITP 617

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            G I L +  +V++   G       +   +   T V + +GGT+V+ G+ + +    +  
Sbjct: 618 EGDIILDL--DVNKDSRGETTTQGVAIDTKHIKTQVLVQNGGTVVIGGIFEMEETNQESK 675

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           IP L  +P+LG LF++     ++ E+ +  TP ++
Sbjct: 676 IPFLGDVPVLGHLFKSRVRESQKREMLVFITPKMI 710


>gi|167743291|ref|ZP_02416065.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 14]
 gi|167850302|ref|ZP_02475810.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei B7210]
 gi|167898903|ref|ZP_02486304.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 7894]
          Length = 318

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 157 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 213

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 214 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 269

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 270 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 318


>gi|76819172|ref|YP_335807.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1710b]
 gi|226198470|ref|ZP_03794038.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|254264542|ref|ZP_04955407.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
 gi|254301393|ref|ZP_04968837.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|76583645|gb|ABA53119.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710b]
 gi|157811287|gb|EDO88457.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|225929527|gb|EEH25546.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|254215544|gb|EET04929.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
          Length = 601

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|237807143|ref|YP_002891583.1| general secretion pathway protein D [Tolumonas auensis DSM 9187]
 gi|237499404|gb|ACQ91997.1| general secretion pathway protein D [Tolumonas auensis DSM 9187]
          Length = 685

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 18/185 (9%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----H 310
           ++  ++ AL   T    LA P++  +  + A+F  G +    T S S+ A SV +     
Sbjct: 441 NWAGLVTALSSNTKSNILATPSIVTLDNKEAAFNVGQEVPVVTGSQSSTAGSVYSTVERK 500

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---------SYRVRKADTTVE 361
             G  L  TP +     + L ++ EVS      +              ++  R    +V 
Sbjct: 501 TVGTKLKVTPQINEGDSVLLEVEQEVSSVASSSSTDSSSSSSNSSLGSTFNTRTVKNSVL 560

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + SG T+VL GLL ++  +    +PLL  IPILG LFR +  +  +  + +      + P
Sbjct: 561 VKSGETVVLGGLLSNNTSESVYKVPLLGDIPILGYLFRYNGTSTTKQNLMV-----FIHP 615

Query: 422 VAMRD 426
             +RD
Sbjct: 616 TILRD 620


>gi|322436034|ref|YP_004218246.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321163761|gb|ADW69466.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 635

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 6/147 (4%)

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTVLSPGRIGLRIQ 333
           A S   A  T GG      ++   GA+S T       D G+ L  TPTVL  G I + I 
Sbjct: 469 ATSSALAGVTVGGVSASSLLNQYLGASSQTIPQIQYEDIGITLKTTPTVLKSGLITMHID 528

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            ++ E + G +A ++P    R   + V  P G T ++   L         GIP L+++P 
Sbjct: 529 LKI-EALTGQSANNIPVLTSRVFTSDVTCPEGSTAMMLSQLSSQESAAVSGIPGLAELPG 587

Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420
                 +    R+ +E+ +  TP LV+
Sbjct: 588 FQTSVADRITERDSSELVMMVTPHLVR 614


>gi|167907227|ref|ZP_02494432.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei NCTC 13177]
          Length = 327

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 166 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 222

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 223 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 278

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 279 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 327


>gi|167566263|ref|ZP_02359179.1| type II/III secretion system protein [Burkholderia oklahomensis
           EO147]
          Length = 311

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 150 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 206

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 207 LPMVVEEGGHTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 262

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D       G+P+LSK+P++GALFR++      TE     TP +++P
Sbjct: 263 YKVDSRSSTLSGVPVLSKLPLVGALFRSTDKQDSHTERLFLVTPRVIEP 311


>gi|91070466|gb|ABE11376.1| putative general (type II) secretion pathway protein D precursor
           [uncultured Prochlorococcus marinus clone HOT0M-10G7]
          Length = 640

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 345 AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            G   +  VRK DT ++ + +G T++L G+L+D        +P+L  IPI G++FR+S  
Sbjct: 562 CGIQNTLSVRKLDTGSIRVQNGETLILTGVLQDSDTVTTSKVPILGDIPIFGSIFRSSAT 621

Query: 404 NREETEIFIAATPFLVK 420
            +++ E+ I  TP ++K
Sbjct: 622 QKKKNELIILVTPKILK 638


>gi|294141031|ref|YP_003557009.1| type III secretion system EscC protein [Shewanella violacea DSS12]
 gi|293327500|dbj|BAJ02231.1| type III secretion system EscC protein, putative [Shewanella
           violacea DSS12]
          Length = 491

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 27/222 (12%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----EGGDFSVKGVL 251
           + + V+I ++     KQ+G   S +      S SF +D   + +S      G+F VK   
Sbjct: 269 IEISVSILDIDASDFKQLGVDWSASAQLGNGSVSFNSDTSSENISTVIGNTGNFMVK--- 325

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310
                   L+ALE+ +  + L+ P++  ++   A          K          SVTT 
Sbjct: 326 --------LNALEKNSKAKVLSHPSVVTLNNVQAVLDKNVTFYTKLEGDKVAKLESVTT- 376

Query: 311 DYGVVLHFTPTVLSPG-----RIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
             G +L  TP ++         + L IQ  + SE V    +  +P  +  +  T   L S
Sbjct: 377 --GTLLRVTPRLIEESGHTAVMLNLNIQDGQQSEAV--SRSDPLPQVQNSEISTQAILKS 432

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           G ++++ G ++D  +     IPLL  IP+LG LFR++  + +
Sbjct: 433 GESLLIGGFVQDRDETSDHKIPLLGDIPLLGGLFRSTEHHTQ 474


>gi|271501355|ref|YP_003334380.1| general secretion pathway protein D [Dickeya dadantii Ech586]
 gi|270344910|gb|ACZ77675.1| general secretion pathway protein D [Dickeya dadantii Ech586]
          Length = 713

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 22/192 (11%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------S 306
           R ++  ++ AL   +    LA P++  +    A+F  G +    T S +T  +      +
Sbjct: 475 RGNWSMLMTALSSDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQTTVGSGNNIFNT 534

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRKAD 357
           V     G+ L   P +     + L+I+ EVS            +GV      ++  R  +
Sbjct: 535 VERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSANSSLGV------TFNTRTVN 588

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             V + +G T+V+ GLL     +    +PLL  IP+LG LFR+   + ++  + +   P 
Sbjct: 589 NAVMVSNGETVVVGGLLDKSTDENNSKVPLLGDIPVLGNLFRSKSQSVKKRNLMLFLRPT 648

Query: 418 LVK-PVAMRDLS 428
           +++ P   +D S
Sbjct: 649 IIRDPKQFQDAS 660


>gi|159903356|ref|YP_001550700.1| Type II secretory pathway, component PulD [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888532|gb|ABX08746.1| Type II secretory pathway, component PulD [Prochlorococcus marinus
           str. MIT 9211]
          Length = 575

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 344 NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           + G++ +  +R+ DT  + +  G T+VL G++K+D  +     P+L  IP+ G LFR + 
Sbjct: 479 DCGNISTLSIRRLDTGNIRVRDGDTLVLTGVIKEDDTKAITKTPVLGDIPLFGRLFRTNS 538

Query: 403 FNREETEIFIAATPFLVK 420
             R+++E+ I  TP ++K
Sbjct: 539 TVRKKSELIIMVTPKVIK 556


>gi|238787451|ref|ZP_04631249.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia frederiksenii ATCC 33641]
 gi|238724238|gb|EEQ15880.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia frederiksenii ATCC 33641]
          Length = 481

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 12/212 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ + VTI +V    + Q+G   S + S  G   SF +   G   S    FS   + D  
Sbjct: 255 QIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNS---GNAKSNADGFSTV-IGDTG 310

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +F   L+AL++ +  R L+ P++  ++   A          K            T   G 
Sbjct: 311 NFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKLQGDKVAKLESVTS--GS 368

Query: 315 VLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           +L  TP +++        + L IQ    +  I  ++  +P  +     T   L  G +++
Sbjct: 369 LLRVTPRMINSDGVKEVMLNLNIQDGQQQAPIS-SSEPLPEIQNSDISTQATLRVGQSLL 427

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           L G ++D   + +  IPLL  IP+LG LFR++
Sbjct: 428 LGGFIQDKQIESQNKIPLLGDIPLLGGLFRST 459


>gi|329942358|ref|ZP_08291168.1| bacterial type II and III secretion system family protein
           [Chlamydophila psittaci Cal10]
 gi|332287000|ref|YP_004421901.1| bacterial type II/III secretion system protein [Chlamydophila
           psittaci 6BC]
 gi|325507136|gb|ADZ18774.1| bacterial type II/III secretion system protein [Chlamydophila
           psittaci 6BC]
 gi|328815268|gb|EGF85256.1| bacterial type II and III secretion system family protein
           [Chlamydophila psittaci Cal10]
 gi|328914230|gb|AEB55063.1| general secretion pathway protein D, putative [Chlamydophila
           psittaci 6BC]
          Length = 885

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    T   T      D G
Sbjct: 665 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIG 724

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L    TV     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 725 VNLVVASTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLVMSGH 783

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++
Sbjct: 784 IRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 829


>gi|153827975|ref|ZP_01980642.1| VcsC2 [Vibrio cholerae 623-39]
 gi|148876556|gb|EDL74691.1| VcsC2 [Vibrio cholerae 623-39]
          Length = 467

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 6/212 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLD 252
           D+V L   IA +     +Q+ F   +   S+   + F  D      S G  D  V    +
Sbjct: 239 DEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGIYDLVVPPFTE 298

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F    HAL      R + E  L  +  Q   F          +S+    T     D 
Sbjct: 299 TTDFLRNFHALTSNGIARGVYETNLLVLENQQGHFGKKQTATIALISNRQVETQKIEADN 358

Query: 313 GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              L+ T  +L  G +  RIQ     + +     N+   P    +  ++ V +  G TI+
Sbjct: 359 S--LYVTGRLLPSGDVQARIQYIEESLDDDKESDNSNRPPKVSSQSLNSEVYIKPGQTII 416

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           L G      QQ+K GIP+LS IP+LG LF+++
Sbjct: 417 LGGFDNTVTQQMKSGIPVLSSIPLLGELFKST 448


>gi|167923433|ref|ZP_02510524.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei BCC215]
          Length = 319

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 158 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 214

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 215 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 270

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 271 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 319


>gi|217425129|ref|ZP_03456624.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
 gi|217391734|gb|EEC31761.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
          Length = 601

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|320102660|ref|YP_004178251.1| type II and III secretion system protein [Isosphaera pallida ATCC
            43644]
 gi|319749942|gb|ADV61702.1| type II and III secretion system protein [Isosphaera pallida ATCC
            43644]
          Length = 1626

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query: 348  MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            +P++ +   +TTV +P GGT++L G+   + ++ + G+P+LSK P L  LFRN    R  
Sbjct: 1538 LPTFTLFTVNTTVTVPDGGTVLLGGVKTSEEERREFGVPVLSKTPYLNRLFRNIGIGRTS 1597

Query: 408  TEIFIAATP 416
              I +  TP
Sbjct: 1598 RSIMMMVTP 1606


>gi|171915532|ref|ZP_02931002.1| fimbrial assembly protein [Verrucomicrobium spinosum DSM 4136]
          Length = 634

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 86/218 (39%), Gaps = 39/218 (17%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------- 295
           G F+V GVL    F+ VL  L ++  I  +A PTL   SGQ A+     +  Y       
Sbjct: 403 GAFAVSGVLTDPQFQGVLRGLNQSKGIDVMATPTLFTKSGQRAALKMVKEFRYPKEYDAP 462

Query: 296 KTVSSSTGA--------TSVTTHDYGVVLHFTPTV---------LSPGRI--------GL 330
           +T + +TG          S    D G+V    P +         LSP  +        G 
Sbjct: 463 ETPTRTTGGGLGKPSSPRSFEKRDVGIVFEVEPVIGQNKVIELSLSPSFLEFEGFIDYGQ 522

Query: 331 RIQTEVSEPVIGV-------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             Q   ++ + G        N    P +R  +  T V +  G T+VL G   +   +  +
Sbjct: 523 DFQNSTTDRLTGQPVYFTVENQILQPIFRANRISTAVSIWDGCTVVLGGAAFEKRFRADD 582

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            +P++  +P++G  F++     E T +    T  +V P
Sbjct: 583 KVPVVGDLPLIGRTFQSKVKQVERTNVLFFVTARIVDP 620


>gi|53722615|ref|YP_111600.1| type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|52213029|emb|CAH39067.1| putative type III secretion system protein [Burkholderia
           pseudomallei K96243]
          Length = 601

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|134281959|ref|ZP_01768665.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
 gi|134246488|gb|EBA46576.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
          Length = 601

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|126445193|ref|YP_001063243.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 668]
 gi|126224684|gb|ABN88189.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 668]
          Length = 601

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|320539812|ref|ZP_08039471.1| putative predicted fimbrial transporter [Serratia symbiotica str.
           Tucson]
 gi|320029998|gb|EFW12018.1| putative predicted fimbrial transporter [Serratia symbiotica str.
           Tucson]
          Length = 403

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 7/184 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-FGGKFVSEGGDFSVKGVLDR 253
           QV L   I  +  + L ++G +  +      P++    D F      +    S    L R
Sbjct: 183 QVQLASYIVTINSENLHELGVRWGLAADER-PAQPLRLDNFNVGLTQQKSTLSAGFHLAR 241

Query: 254 FS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            S       L ALE+   +  +A P L     Q+AS   G +  Y+  S ++GATSV   
Sbjct: 242 LSGRLLNLELTALEQENRVEIIANPRLLTAHMQTASIKQGTEIPYEVSSGASGATSVEFK 301

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTI 368
           +  + +  TP VL  GRI L +    + P   V+ G+  +  + K +  T + +  G TI
Sbjct: 302 EAVLGMEVTPRVLPDGRITLTLYISQNMPGRSVSRGEGEALTIDKQEIKTQITVKDGETI 361

Query: 369 VLAG 372
           VL G
Sbjct: 362 VLGG 365


>gi|254185101|ref|ZP_04891690.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
 gi|184215693|gb|EDU12674.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
          Length = 601

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|260220229|emb|CBA27559.1| Fimbrial assembly protein pilQ [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 696

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 4/168 (2%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           DRF     + ALE     + ++ P +   + Q  +    G  L   V+SS+GATS+    
Sbjct: 526 DRF-LNLEISALEAEGKGKVVSSPRVVT-ADQIKALIEQGTELPYQVASSSGATSIAFRK 583

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
             + L   P +   G I L +  +V++  +G +     +   +   T V + +GGT+V+ 
Sbjct: 584 ANLKLEVLPQITPEGNIILTL--DVTKDTVGQSTPAGFAIDTKHVQTQVLVENGGTVVIG 641

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+  +     +  +P    +P LG LFRN      + E+ +  TP ++
Sbjct: 642 GIFTESSTDSETKVPFFGDLPGLGVLFRNRAKEITKREMLVFITPKVI 689


>gi|237508433|ref|ZP_04521148.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
 gi|235000638|gb|EEP50062.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
          Length = 601

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|254194240|ref|ZP_04900672.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei S13]
 gi|169650991|gb|EDS83684.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei S13]
          Length = 601

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|186477543|ref|YP_001859013.1| type IV pilus secretin PilQ [Burkholderia phymatum STM815]
 gi|184194002|gb|ACC71967.1| type IV pilus secretin PilQ [Burkholderia phymatum STM815]
          Length = 523

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 19/240 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS--------GPSKSFAADFGGKFVSEGGDFS 246
           QV ++  I E  +   + +G + S+ G++         G       D   + VS G D +
Sbjct: 287 QVLIEARIVEAEKGFSRNLGVKLSMIGTNEDGKATGLVGGKDGAILDLSARPVS-GFDAA 345

Query: 247 VKGVLDRFSFETV------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             G L  F+ +        L ALE     + ++ P +       A    G +  Y+    
Sbjct: 346 TMG-LTLFAAQATRLVNIELSALEAEGRGQIVSSPRVVTADRMKAVVEQGTELPYQ-AKV 403

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T V
Sbjct: 404 GQGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVAKDSVGEQTASGPAINTKHVQTRV 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           E+  GGT+ + G+ + D +     +PLL KIP+LG  FR+       +E+ +  TP +V+
Sbjct: 462 EVEDGGTVSIGGIYETDGRDDVTRVPLLGKIPVLGVFFRHRAHRDLRSELVVFITPRVVQ 521


>gi|167615514|ref|ZP_02384149.1| type II/III secretion system protein [Burkholderia thailandensis
           Bt4]
          Length = 309

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 148 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 204

Query: 319 TPTVLSPG-RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            P V+  G R  +++   + +  +     D +P     + +T   +  G  +++AG   D
Sbjct: 205 LPMVVEEGGRTQIKLDVRIVDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 264

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                + G+P+LSK+P+LGALFR++      +E     TP +++P
Sbjct: 265 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 309


>gi|171915470|ref|ZP_02930940.1| type II and III secretion system protein:NolW-like
           [Verrucomicrobium spinosum DSM 4136]
          Length = 896

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 94/198 (47%), Gaps = 19/198 (9%)

Query: 234 FGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           FGG   F +  G  +V G + +      L  LE+      L +PT+TA++ + A+   G 
Sbjct: 572 FGGIEDFAAPQG-LAVYGHIGKH-LNVFLRTLEQNKRFHVLQKPTVTALNHEEANIFIG- 628

Query: 292 QHL-------YKTVSSSTGATSVTTHDYGVV---LHFTPTVLSPGRIGLRIQTEVSEPVI 341
           Q L           ++  GA+  +T DY  V   L  TP + +   + L  + + +  V 
Sbjct: 629 QDLAIAGQTLTTGGTTVNGASVASTTDYVKVRLELRITPHIFANDEVRLDFE-QTNNDVS 687

Query: 342 G---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           G   ++   +P+  V+    T+ +P+  T++L GL+ +   + K G+P L ++P+L  LF
Sbjct: 688 GFTEISGNRVPNLSVQGMRNTIIVPNRSTVLLGGLITERDSKNKNGLPFLVRVPVLKHLF 747

Query: 399 RNSRFNREETEIFIAATP 416
            N+  ++E  E+ I   P
Sbjct: 748 GNTSNSKERRELMIFVQP 765


>gi|162457505|ref|YP_001619872.1| general secretion pahtway protein D [Sorangium cellulosum 'So ce
           56']
 gi|161168087|emb|CAN99392.1| general secretion pahtway protein D [Sorangium cellulosum 'So ce
           56']
          Length = 864

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGG 366
            D G  +   P V    ++ L +  E+S+   P+ G   G +P  + R A TT+ +    
Sbjct: 618 QDVGTKIKVVPHVNDSDQVRLELSEEISDAGAPLEGA-LGAIPINK-RTASTTLVVRDQQ 675

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           T+V+ GL++D +   +  IP+L  IP+LG LFR     + +T + +  TP++++
Sbjct: 676 TVVIGGLMRDGMTTSETKIPVLGDIPVLGFLFRQRVKTKTKTNLLLVLTPYVIR 729


>gi|121593158|ref|YP_985054.1| type IV pilus secretin PilQ [Acidovorax sp. JS42]
 gi|120605238|gb|ABM40978.1| type IV pilus secretin PilQ [Acidovorax sp. JS42]
          Length = 696

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 11/203 (5%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSV---KGVLDRF-SFETVLHALERATAIRTLAEPT 276
           GS   P  S  A   G  VS  G F++        RF S E  L A+E     + ++ P 
Sbjct: 494 GSGMSPFVSLPASLSG--VSTVGSFALSIFNSNASRFLSLE--LSAMEADGQGKIVSSPR 549

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L       A    G ++ Y +V++  GAT++      + L  TP +   G I L +  +V
Sbjct: 550 LITADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVTPQITPEGNIILDL--DV 606

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           ++   G       +   +   T V + +GGT+V+ G+ + +    +  IP+L  +P++G 
Sbjct: 607 NKDSRGETTTQGVAIDTKHVKTQVLIENGGTVVIGGIFEMEETNQENKIPVLGDVPVVGN 666

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LF+N      + E+ +  TP ++
Sbjct: 667 LFKNRTKESTKREMLVFITPKVI 689


>gi|167842291|ref|ZP_02468975.1| type III secretion system EscC protein [Burkholderia thailandensis
           MSMB43]
          Length = 508

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 23/234 (9%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V + V I +V    L  +G   S +    G S SF  + GG+   + G FS   V +   
Sbjct: 285 VEISVAIIDVNAQDLSMLGVDWSASARIGGGSVSF--NSGGE--PDSGSFSTV-VSNTGQ 339

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYG 313
           F   L ALE+    + L+ P++  +    A         Y  VS+   A   S++T   G
Sbjct: 340 FMVRLSALEQNAKAQILSRPSVVTLDNMQAVLDRN-ITFYTKVSAERVAKLESIST---G 395

Query: 314 VVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRKADTTVELPSGG 366
            +L  TP V+  PG+  + +   V +   G   G       +P     +  T   L  G 
Sbjct: 396 SLLRVTPRVIGDPGKQEIMLTLMVQD---GRQTGALSKQEPLPQTLNSEIATHALLKEGQ 452

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET-EIF-IAATPFL 418
            ++L G ++D++ + +  IPLL  IP+LG LF+    N+  T  +F I A P+L
Sbjct: 453 ALLLGGFVQDELSEGERKIPLLGDIPLLGNLFKMRHKNQRHTVRLFLIKAEPWL 506


>gi|299139665|ref|ZP_07032838.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298598289|gb|EFI54454.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 838

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 31/190 (16%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGA-------TSVTTH 310
           ++AL + T  R L  P L A  GQ A+   G +      ++SS  G        T  T  
Sbjct: 431 VNALLQDTNTRILQNPRLRATDGQKATLKIGQRVPIASGSLSSPVGGVSSLGVQTQFTYV 490

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVS------------EPVIGVNAGDMPSYRVRKADT 358
           D G  +  TP V S G + L+++ EVS            EPVIG           +  + 
Sbjct: 491 DVGTNMDITPAVHSDGSVSLKMKVEVSQVDTYDTISGVQEPVIGQ----------KVLEQ 540

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           T++L  G   +LAGL+         G P L ++P+L  LF       +  EI     P +
Sbjct: 541 TIKLRDGEPSILAGLVTKQDSVAGSGTPGLGELPVLKYLFGTQTKTLQNDEIVFLLVPHI 600

Query: 419 VKPVAMRDLS 428
           ++   ++ L+
Sbjct: 601 IRETLLQKLN 610


>gi|497225|gb|AAA74040.1| invG [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 563

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P +T+    SA F +      K +     A    T 
Sbjct: 348 LDGSRFIAAVNALEEKKQATVVSAPGITSSGKCSAIFDNNRTFYTKLIGERNVALEHVT- 406

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 407 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 463

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 464 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 518

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 519 IVDPLTPDASESVNN 533


>gi|282899176|ref|ZP_06307153.1| pilQ(type II and III secretion system protein) [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195931|gb|EFA70851.1| pilQ(type II and III secretion system protein) [Cylindrospermopsis
           raciborskii CS-505]
          Length = 522

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 41/61 (67%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T++L+G+++D  + +   +PLL  IP+LGALFR++  +RE  E+ +  TP ++
Sbjct: 459 IRLRDGQTLLLSGIIQDQDRTVVTKVPLLGDIPLLGALFRSTNKDRERREVIVLLTPRII 518

Query: 420 K 420
           +
Sbjct: 519 E 519


>gi|317487416|ref|ZP_07946204.1| type IV pilus secretin PilQ [Bilophila wadsworthia 3_1_6]
 gi|316921348|gb|EFV42646.1| type IV pilus secretin PilQ [Bilophila wadsworthia 3_1_6]
          Length = 541

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 94/211 (44%), Gaps = 8/211 (3%)

Query: 216 QHSITGSSSGPSKS------FAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHALERATA 268
           Q  +TG  +G   S      F  D+ G   ++ G    + G +     E  L+ +E+   
Sbjct: 297 QDPVTGGLTGTHGSGLGGAPFGLDYSGIASNDMGSLGFLFGKVGGSMLEVQLNLMEKDGN 356

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           I  L+ P++T +  + A +T  G+ +    +S+ G   V   D  + L  TP V+    +
Sbjct: 357 INILSSPSITTLDNKMA-YTENGEKVPYVSTSNMGDREVKFEDAVLRLEMTPNVIDGDNL 415

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L++  +  E     +    P    ++ +TT+ + +G T+V++GL K+    +  G+P L
Sbjct: 416 KLKVLVKKDEVDTSRSVDGNPFIIKKQTETTLIMRNGETVVISGLTKEKGTDINAGVPGL 475

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
             IP    +F +    +   E+ I  TP ++
Sbjct: 476 KDIPGGKYVFGHESKGKTMEEVLIFITPEIL 506


>gi|332184221|gb|AEE26475.1| Type IV pilus biogenesis protein PilQ [Francisella cf. novicida
           3523]
          Length = 596

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 114/264 (43%), Gaps = 29/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKF 238
           K+V+N ++I   DQV ++  I EV R    ++GF + +   S   +    +F ++     
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390

Query: 239 VSEGGDFSVKGVLDRF---------------SFETVLHALERATAIRTLAEPTLTAISGQ 283
               G       +D F                 +  + ALE  +    +A P L   + Q
Sbjct: 391 GPTPGPTPTPTPVDTFVGTTAKLAYTIAGGVQLQMEIRALESESLAEEVASPHLVVANNQ 450

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            A F   G+ +    ++++GA +V   +  + L  TP +   G I + I   V++  +G 
Sbjct: 451 VA-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGA 507

Query: 344 NAGDMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           + G  P         + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG 
Sbjct: 508 SPGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGY 567

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           LF  ++   +++E+ I  TP +++
Sbjct: 568 LFSYTKITDQDSELLIFITPKIIQ 591


>gi|238763779|ref|ZP_04624738.1| Protein transporter HofQ [Yersinia kristensenii ATCC 33638]
 gi|238698081|gb|EEP90839.1| Protein transporter HofQ [Yersinia kristensenii ATCC 33638]
          Length = 425

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 2/126 (1%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G    Y       G T++   +  + +  TP +L  G+I L 
Sbjct: 297 IASPRLVTSHQQTASIKQGSDIPYTVSRGKKGTTTIEFKEAVLGMEVTPKILRNGKITLN 356

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P + +  GD  +  + K +  T + +  G TIVL G+ +    Q    +P+L+
Sbjct: 357 LKISHNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETIVLGGIFQQKNSQGVNKVPMLA 416

Query: 390 KIPILG 395
            IP LG
Sbjct: 417 DIPWLG 422


>gi|227114133|ref|ZP_03827789.1| general secretion pathway protein D [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 684

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 34/208 (16%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  +L AL + +    LA P++  +    A+F             T+ G ++++TV   
Sbjct: 446 NWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERK 505

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADT 358
           T          G+ L   P +     + L I+ EVS      ++       ++  R  + 
Sbjct: 506 T---------VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGATFNTRTVNN 556

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V + SG T+V+ GLL     +    +PLL  IP+LG LFR++    ++  + +      
Sbjct: 557 AVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNLML-----F 611

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
           ++P  +RD S     Y     +K   FN
Sbjct: 612 IRPSIIRDRS----QYQSASASKYHSFN 635


>gi|153832481|ref|ZP_01985148.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           harveyi HY01]
 gi|148871276|gb|EDL70148.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           harveyi HY01]
          Length = 623

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 10/174 (5%)

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTS 289
           D  G  V+ G   + K +LD  +   +L     LE   + + ++ PTL       A   +
Sbjct: 334 DVDGGDVTLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNN 393

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-----GRIGLRIQTEVSEPVIGVN 344
                 K +   T A    T  YG +L   P ++         I L +  E    +    
Sbjct: 394 SSTFYVKLIGRETAALEEVT--YGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGG 451

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             D+PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALF
Sbjct: 452 VDDVPSIRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALF 505


>gi|254175910|ref|ZP_04882568.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|160696952|gb|EDP86922.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
          Length = 599

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 438 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 494

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 495 LPMVVDEGGCTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 550

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 551 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599


>gi|330890299|gb|EGH22960.1| general secretion pathway protein D [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 123

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G  +VL GLL+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++
Sbjct: 1   GQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIR 56


>gi|171909982|ref|ZP_02925452.1| general secretion pathway protein D [Verrucomicrobium spinosum DSM
           4136]
          Length = 632

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 25/192 (13%)

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTA---------------ISGQSASFTSGGQHL 294
           V D    + ++HALE+   +   + PT+                 I   + S T  GQ +
Sbjct: 342 VFDAMQVQAIVHALEQNGIVSQESCPTIITEDNEQGIISIVDRFPIVTTNVSQTDAGQTI 401

Query: 295 -----YKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVN 344
                YK       A      + + GV L  TPT+L  G + ++++  V+   E V G N
Sbjct: 402 TDEVRYKVDKDDPDAMEEPDKSREIGVTLTVTPTMLPDGTVRMKLRPRVAKIVELVQGNN 461

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P      AD    +P+G +++L G         K  +P+L  +P+L  LFR     
Sbjct: 462 GNVYPRVSESTADAISRIPAGQSLILGGFYDYSSSNNKNKVPVLGNVPVLKHLFRYKEKT 521

Query: 405 REETEIFIAATP 416
            E+  +    TP
Sbjct: 522 MEKVSLVFIITP 533


>gi|254186924|ref|ZP_04893440.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157934608|gb|EDO90278.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 599

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 438 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 494

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 495 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 550

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 551 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599


>gi|208779792|ref|ZP_03247136.1| type IV pilus secretin PilQ family protein, putative [Francisella
           novicida FTG]
 gi|208744247|gb|EDZ90547.1| type IV pilus secretin PilQ family protein, putative [Francisella
           novicida FTG]
          Length = 596

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 114/264 (43%), Gaps = 29/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKF 238
           K+V+N ++I   DQV ++  I EV R    ++GF + +   S   +    +F ++     
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390

Query: 239 VSEGGDFSVKGVLDRF---------------SFETVLHALERATAIRTLAEPTLTAISGQ 283
               G       +D F                 +  + ALE  +    +A P L   + Q
Sbjct: 391 GPTPGPTPTPTPVDTFVGTTAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQ 450

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            A F   G+ +    ++++GA +V   +  + L  TP +   G I + I   V++  +G 
Sbjct: 451 VA-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGA 507

Query: 344 NAGDMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           + G  P         + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG 
Sbjct: 508 SPGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGY 567

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           LF  ++   +++E+ I  TP +++
Sbjct: 568 LFSYTKITDQDSELLIFITPKIIE 591


>gi|167573369|ref|ZP_02366243.1| type II/III secretion system protein [Burkholderia oklahomensis
           C6786]
          Length = 607

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 446 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 502

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 503 LPMVVEEGGHTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 558

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D       G+P+LSK+P++GALFR++      TE     TP +++P
Sbjct: 559 YKVDSRSSTLSGVPVLSKLPLVGALFRSTDKQDSHTERLFLVTPRVIEP 607


>gi|332678440|gb|AEE87569.1| Type IV pilus biogenesis protein PilQ [Francisella cf. novicida
           Fx1]
          Length = 596

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 113/264 (42%), Gaps = 29/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKF 238
           K+V+N ++I   DQV ++  I EV R    ++GF + +   S   +    +F ++     
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390

Query: 239 VSEGGDFSVKGVLDRF---------------SFETVLHALERATAIRTLAEPTLTAISGQ 283
                       +D F                 +  + ALE  +    +A P L   + Q
Sbjct: 391 TPTPTPTPTPTPVDTFVGTTAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQ 450

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            A F   G+ +    ++++GA +V   +  + L  TP +   G I + I   V++  +G 
Sbjct: 451 VA-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGA 507

Query: 344 NAGDMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           + G  P         + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG 
Sbjct: 508 SPGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGY 567

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           LF  ++   +++E+ I  TP +++
Sbjct: 568 LFSYTKITDQDSELLIFITPKIIE 591


>gi|221069059|ref|ZP_03545164.1| type IV pilus secretin PilQ [Comamonas testosteroni KF-1]
 gi|220714082|gb|EED69450.1| type IV pilus secretin PilQ [Comamonas testosteroni KF-1]
          Length = 703

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 36/253 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGG----KFVSEGGDF-- 245
           QV ++  I E R    + +G +    ++  ++S  S  F  D G     KF S  G+F  
Sbjct: 451 QVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSGSGSSSKFPS--GNFVN 508

Query: 246 ---SVKGV--------------LDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              SV GV              + RF S E  L ALE     + ++ P L       A  
Sbjct: 509 LPASVAGVNTVGQVAFSVFNSSMTRFLSLE--LSALEAEGDGKIISNPRLVTADQNKALI 566

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G ++ Y +V++  GAT+++     + L  TP +   G I L +  +V++   G     
Sbjct: 567 EQGTEYPY-SVTAPNGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQ 623

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             +   +   T V + +GGT+V+ G+ + ++  QL + +PL   +P+LG LFR++     
Sbjct: 624 GVAIDTKHIKTQVLVENGGTVVIGGIFEMEETNQLNK-VPLFGDLPVLGHLFRSNTKAST 682

Query: 407 ETEIFIAATPFLV 419
           + E+ +  TP ++
Sbjct: 683 KREMLVFITPKML 695


>gi|56708227|ref|YP_170123.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670698|ref|YP_667255.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224457344|ref|ZP_03665817.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370714|ref|ZP_04986719.1| type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254875049|ref|ZP_05247759.1| type IV pilus multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604719|emb|CAG45789.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110321031|emb|CAL09172.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568957|gb|EDN34611.1| type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254841048|gb|EET19484.1| type IV pilus multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282159452|gb|ADA78843.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 594

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 10/172 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            E  + ALE  +    +A P L   + Q A F   G+ +    ++++GA +V   +  + 
Sbjct: 421 LEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVAFQEAVLE 479

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-------YRVRKADTTVELPSGGTI 368
           L  TP +   G I + I   V++  +G + G  P         + R+  T V    G T+
Sbjct: 480 LQVTPQIAPDGNIIMDIL--VTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTKDGDTV 537

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           V+ G+ +   ++ +  IP L  IP LG LF  ++   +++E+ I  TP +++
Sbjct: 538 VIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKIIE 589


>gi|53716218|ref|YP_106182.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|124381659|ref|YP_001025783.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|126446314|ref|YP_001077867.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|254201058|ref|ZP_04907423.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei FMH]
 gi|254205023|ref|ZP_04911376.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei JHU]
 gi|254359145|ref|ZP_04975417.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei 2002721280]
 gi|52422188|gb|AAU45758.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|126239168|gb|ABO02280.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|147748670|gb|EDK55745.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei FMH]
 gi|147754609|gb|EDK61673.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei JHU]
 gi|148028332|gb|EDK86292.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei 2002721280]
 gi|261826429|gb|ABM99750.2| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
          Length = 599

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 438 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 494

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 495 LPMVVDEGGCTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 550

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 551 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599


>gi|299529630|ref|ZP_07043067.1| type IV pilus secretin PilQ [Comamonas testosteroni S44]
 gi|298722493|gb|EFI63413.1| type IV pilus secretin PilQ [Comamonas testosteroni S44]
          Length = 704

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 5/161 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P L       A    G ++ Y +V++  GAT+++     + L  T
Sbjct: 540 LSALEAEGDGKIISNPRLVTADQNKALIEQGTEYPY-SVTAPNGATTISFKKAVLKLEVT 598

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-DDI 378
           P +   G I L +  +V++   G       +   +   T V + +GGT+V+ G+ + ++ 
Sbjct: 599 PQITPEGDIILDL--DVNKDSRGETTTQGVAIDTKHVKTQVLVENGGTVVIGGIFELEET 656

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            QL + +PL   +P+LG LFR++     + E+ +  TP ++
Sbjct: 657 NQLNK-VPLFGDLPVLGHLFRSNTKASSKREMLVFITPKML 696


>gi|167587171|ref|ZP_02379559.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia ubonensis Bu]
          Length = 341

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE A   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 180 INALESANQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 236

Query: 319 TPTVLSPG-RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            P V+  G R  +++   + +  +     D +P     + +T   +  G  +++AG   D
Sbjct: 237 LPMVVEEGGRTQIKLDVRIVDGELSRQTVDNIPVIVSTEINTQAFIEQGQALLIAGYKMD 296

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                + G+P+LSK+P++G LFR++      +E     TP +++P
Sbjct: 297 ARSSTQSGVPVLSKLPLIGGLFRSTDKEDSHSERLFLVTPRVIEP 341


>gi|126457187|ref|YP_001076198.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1106a]
 gi|242313849|ref|ZP_04812866.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
 gi|126230955|gb|ABN94368.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106a]
 gi|242137088|gb|EES23491.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
          Length = 599

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 438 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 494

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 495 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 550

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 551 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599


>gi|325927911|ref|ZP_08189135.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           perforans 91-118]
 gi|325541751|gb|EGD13269.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           perforans 91-118]
          Length = 624

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 82/174 (47%), Gaps = 7/174 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--- 310
           F+ +  L AL++      ++ P +   + +      G +  Y TV+  TG  + T +   
Sbjct: 445 FNLDLELSALQQEGRGEVISNPRIVTSNQREGVIKQGREIGYVTVTGGTGGQAATPNVQF 504

Query: 311 -DYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +  + L  TPT+ +  R+ L +   + EV + +     G +PS   R+ +T V +  G 
Sbjct: 505 KEVLLELKVTPTITNDNRVFLNMNVKKDEVDQLIELPLYGTVPSINRREINTAVLVDDGQ 564

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           T+V+ G+ +   +     +P L  +P LG LF++    + + E+ +  TP +++
Sbjct: 565 TVVIGGVYEFTDRASVNKVPFLGDVPFLGNLFKSRGRQKSKAELLVFITPKVLR 618


>gi|264676808|ref|YP_003276714.1| type IV pilus secretin PilQ [Comamonas testosteroni CNB-2]
 gi|262207320|gb|ACY31418.1| type IV pilus secretin PilQ [Comamonas testosteroni CNB-2]
          Length = 704

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 19/210 (9%)

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV-----------LHALERATAIR 270
           SSSG S  F +   G FV+     S    + + +F              L ALE     +
Sbjct: 494 SSSGASTKFPS---GNFVNLPASVSGVNTVGQVAFSVFNSSMTRFLSLELSALEAEGDGK 550

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            ++ P L       A    G ++ Y +V++  GAT+++     + L  TP +   G I L
Sbjct: 551 IISNPRLVTADQNKALIEQGTEYPY-SVTAPNGATTISFKKAVLKLEVTPQITPEGDIIL 609

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIPLLS 389
            +  +V++   G       +   +   T V + +GGT+V+ G+ + ++  QL + +PL  
Sbjct: 610 DL--DVNKDSRGETTTQGVAIDTKHVKTQVLVENGGTVVIGGIFELEETNQLNK-VPLFG 666

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            +P+LG LFR++     + E+ +  TP ++
Sbjct: 667 DLPVLGHLFRSNTKASSKREMLVFITPKML 696


>gi|121603587|ref|YP_980916.1| type IV pilus secretin PilQ [Polaromonas naphthalenivorans CJ2]
 gi|120592556|gb|ABM35995.1| type IV pilus secretin PilQ [Polaromonas naphthalenivorans CJ2]
          Length = 712

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+T +SS GATS+      + L  T
Sbjct: 549 LSALEADGKGKIVSSPRVVTADQTKALIEQGTEFPYQTATSS-GATSLAFRKANLKLEVT 607

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G I L +  +V++   G       +   +   T V + +GGT+V+ G+   +  
Sbjct: 608 PQITPEGNIILDL--DVNKDSRGETTAAGIAIDTKHIQTQVLVENGGTVVIGGIFTLEET 665

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  +PLL  +P LG LF++      + E+ +  TP ++
Sbjct: 666 NNEVKVPLLGDVPYLGNLFKSRERTSRKQEMLVFITPKMI 705


>gi|89898772|ref|YP_515882.1| type III secretion general secretion pathway protein D
           [Chlamydophila felis Fe/C-56]
 gi|89332144|dbj|BAE81737.1| type III secretion general secretion pathway protein D
           [Chlamydophila felis Fe/C-56]
          Length = 908

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    T   T      D G
Sbjct: 688 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIG 747

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L    T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 748 VNLVVASTIAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLVMSGH 806

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++
Sbjct: 807 IRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 852


>gi|326315788|ref|YP_004233460.1| type IV pilus secretin PilQ [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372624|gb|ADX44893.1| type IV pilus secretin PilQ [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 715

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E     + ++ P L       A    G ++ Y +V++  GAT++      + L  T
Sbjct: 552 LSAMEADGQGKVVSSPRLITADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVT 610

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G I L +  +V++   G       +       T V + +GGT+V+ G+ + +  
Sbjct: 611 PQITPEGNIILDL--DVNKDSKGETTTQGVAIDTNHVKTQVLVENGGTVVIGGIFRLEET 668

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  IPLL  +P++G LF+N      + E+ +  TP ++
Sbjct: 669 NQENKIPLLGDVPVVGNLFKNRTRESTKREMLVFITPKVI 708


>gi|222109918|ref|YP_002552182.1| type IV pilus secretin pilq [Acidovorax ebreus TPSY]
 gi|221729362|gb|ACM32182.1| type IV pilus secretin PilQ [Acidovorax ebreus TPSY]
          Length = 696

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 11/203 (5%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSV---KGVLDRF-SFETVLHALERATAIRTLAEPT 276
           GS   P  S  A   G  VS  G F++        RF S E  L A+E     + ++ P 
Sbjct: 494 GSGMSPFVSLPASLSG--VSTVGSFALSIFNSNASRFLSLE--LSAMEADGQGKIVSSPR 549

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L       A    G ++ Y +V++  GAT++      + L  TP +   G I L +  +V
Sbjct: 550 LITADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVTPQITPEGNIILDL--DV 606

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           ++   G +     +   +   T V + +GGT+V+ G+ + +    +  IP+L  +P++G 
Sbjct: 607 NKDSRGESTTQGVAIDTKHIKTQVLIENGGTVVIGGIFEMEETNQENKIPVLGDVPVVGN 666

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LF+N      + E+ +  TP ++
Sbjct: 667 LFKNRTKESTKREMLVFITPKVI 689


>gi|83717709|ref|YP_438974.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|83651534|gb|ABC35598.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 605

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 444 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 500

Query: 319 TPTVLSPG-RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            P V+  G R  +++   + +  +     D +P     + +T   +  G  +++AG   D
Sbjct: 501 LPMVVEEGGRTQIKLDVRIVDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 560

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                + G+P+LSK+P+LGALFR++      +E     TP +++P
Sbjct: 561 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 605


>gi|227327883|ref|ZP_03831907.1| general secretion pathway protein D [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 684

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 30/191 (15%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  +L AL + +    LA P++  +    A+F             T+ G ++++TV   
Sbjct: 446 NWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERK 505

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADT 358
           T          G+ L   P +     + L I+ EVS      ++       ++  R  + 
Sbjct: 506 T---------VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGATFNTRTVNN 556

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V + SG T+V+ GLL     +    +PLL  IP+LG LFR++    ++  + +      
Sbjct: 557 AVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNLML-----F 611

Query: 419 VKPVAMRDLSR 429
           ++P  +RD S+
Sbjct: 612 IRPSIIRDRSQ 622


>gi|171463462|ref|YP_001797575.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193000|gb|ACB43961.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 509

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 3/157 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E+ + ++ ++ P +  +  + A    G Q  Y      T   +    D  + L  T
Sbjct: 352 LTAMEKLSLVKIISNPHVFTMDNEEAVVIDGVQIPYPVPGVGTNQITYEFKDAALKLTAT 411

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P+++  G + L +      P    +    PS   R+  + + +  G   V+ G+     +
Sbjct: 412 PSIVGDGNLFLNMIVNKDSPNYSTSP---PSINKREVRSKLLIQDGTIAVIGGIYDQTKE 468

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              E +PLL  IP+LG+LF  +R   ++T++ +   P
Sbjct: 469 NTVEKVPLLGSIPLLGSLFSYTRKADKKTQLLVFIAP 505


>gi|167577363|ref|ZP_02370237.1| type II/III secretion system protein [Burkholderia thailandensis
           TXDOH]
          Length = 605

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 444 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 500

Query: 319 TPTVLSPG-RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            P V+  G R  +++   + +  +     D +P     + +T   +  G  +++AG   D
Sbjct: 501 LPMVVEEGGRTQIKLDVRIVDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 560

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                + G+P+LSK+P+LGALFR++      +E     TP +++P
Sbjct: 561 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 605


>gi|85704683|ref|ZP_01035785.1| general secretion pathway protein D [Roseovarius sp. 217]
 gi|85671091|gb|EAQ25950.1| general secretion pathway protein D [Roseovarius sp. 217]
          Length = 648

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 108/279 (38%), Gaps = 35/279 (12%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAAD------------FGGKFV 239
           DQV ++  I E+  +    + FQ    I G++ G    FA                G   
Sbjct: 324 DQVLIEAVIFELSVESFSDLSFQFGGVIDGATVG-GVEFALQGRPTLTSLVSTVLAGNAP 382

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           + GG        D+      L AL   ++ + L+ P++  ++ + A         + T S
Sbjct: 383 TGGGTGGSIAAFDKSGIGGFLAALASKSSTKLLSTPSILTLNNREAEIVVAQNVPFVTGS 442

Query: 300 SSTGATS---------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            ST   S         +   D G+ L  TP +     + L I  EVS      +A     
Sbjct: 443 FSTVGDSAVPNQPFQTIQRQDVGLTLTVTPQITRDKTVRLEINQEVSNLTNAASAAGGEI 502

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R+  T V +  G  I+L GLL++    + + +P LS++P+LG LF+    N  +  +
Sbjct: 503 TSKRELSTNVLVRDGHVIMLGGLLENGSGSVNQRVPGLSELPLLGRLFKGRSVNENQRIL 562

Query: 411 FIAATPF----------LVKPVAMRDLSRPDDHYSVEDD 439
            +   P           L K +A R+  R  D+ +  DD
Sbjct: 563 LVMLRPRILSSDEEARELTKRLA-REAKRAADYIAPADD 600


>gi|171320148|ref|ZP_02909212.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
 gi|171094623|gb|EDT39673.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
          Length = 615

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 454 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 510

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 511 LPMVVEEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 566

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + GIP+LSK+P++GALFR++      +E     TP +++P
Sbjct: 567 YKVDARSSTQSGIPVLSKLPLVGALFRSTDRQDGHSERLFLVTPRVIEP 615


>gi|29839808|ref|NP_828914.1| type III secretion protein SctC [Chlamydophila caviae GPIC]
 gi|29834155|gb|AAP04792.1| type III secretion protein SctC [Chlamydophila caviae GPIC]
          Length = 909

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    T   T      D G
Sbjct: 689 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIG 748

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L    T+     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 749 VNLVVASTIAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLVMSGH 807

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++
Sbjct: 808 IRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 853


>gi|46447532|ref|YP_008897.1| putative protein of the general secretion pathway [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46401173|emb|CAF24622.1| putative protein of the general secretion pathway [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 829

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%)

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P    R     V++P G TI+L GL +      K+ IP L ++P LG LF  +      +
Sbjct: 682 PDVTRRHITNQVQVPDGDTIILGGLRRKTTNDNKDSIPFLGELPGLGKLFSTNSLKDSSS 741

Query: 409 EIFIAATPFLVK 420
           E+FI  TP +VK
Sbjct: 742 EMFIFITPHIVK 753


>gi|308274907|emb|CBX31506.1| hypothetical protein N47_E50180 [uncultured Desulfobacterium sp.]
          Length = 718

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 3/112 (2%)

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGT 367
           D G++L   P +     + L I  E+S    G   V     P+   R   T+V +    T
Sbjct: 500 DVGILLKIKPQINEGEYVKLDIYQEISAQKAGSENVITSIGPTMTKRSTKTSVAVKDKQT 559

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +V+ GL+++  ++    IPLL  IP LG LF+    +R +T + +  TP+++
Sbjct: 560 VVIGGLMQERDEESITKIPLLGDIPGLGWLFKYRSISRAKTNLLVFLTPYII 611


>gi|86607978|ref|YP_476740.1| type IV pilus secretin PilQ [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556520|gb|ABD01477.1| type IV pilus secretin PilQ, putative [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 696

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 11/120 (9%)

Query: 310 HDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKAD------TTV 360
            D GV+L  +   +   G + L IQ E+S PV    +  GD     +   D      + +
Sbjct: 566 EDAGVILDVSEVRIDDNGFVTLTIQPEISIPVPSQILGGGDFAGILLFNIDRRQLQASQL 625

Query: 361 ELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L  G T ++AGL++D DI  +++ +P L  +P+LGALFR+   N E  E+    TP+++
Sbjct: 626 RLRDGQTFIIAGLIQDRDIVDVQK-VPFLGDLPLLGALFRSQSVNNERNEVVFMLTPYIM 684


>gi|313683362|ref|YP_004061100.1| type ii and iii secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
 gi|313156222|gb|ADR34900.1| type II and III secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
          Length = 494

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 105/259 (40%), Gaps = 49/259 (18%)

Query: 195 QVTLKVTIAEVRRDILKQIG-----FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           QV ++  + E+  +    IG     F  ++ GS +    +          S G DF+  G
Sbjct: 236 QVMIEAHLIELTYNDYSSIGVNWSNFSLALNGSYTNSYNNIGT--AHPVYSFGIDFNPTG 293

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVS-------S 300
           ++D          L++   +  L+ P +  +S Q A    G Q  +LY+  S        
Sbjct: 294 LID---------FLKQYGDVEVLSNPKVLTLSNQPAIINVGKQLSYLYQNGSIIGTTSTP 344

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------------ 348
           +T   ++ +   G+ L+  P V   G I +RI      PV      D             
Sbjct: 345 TTVTNTLGSVFVGLTLNIIPEVSEDGYIIMRIN-----PVSSELLSDSELSSSSSQTSQT 399

Query: 349 -------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                  P  RV++  + V++     +++ GL++    + +  +PLL  IP+ G LF NS
Sbjct: 400 QTDRVMPPDTRVKQMSSIVKVKDSQKVLIGGLIEKKNYKNQTKVPLLGDIPLFGKLFHNS 459

Query: 402 RFNREETEIFIAATPFLVK 420
                ++E+FI  TP LVK
Sbjct: 460 TDTIRKSELFILITPILVK 478


>gi|21244106|ref|NP_643688.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109733|gb|AAM38224.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 633

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 7/174 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTT 309
           F+ +  L A++       ++ P +   + +      G +  Y T+S          +V  
Sbjct: 454 FALDMELSAMQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGGGTGGQSQANVQF 513

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGG 366
            +  + L  TPT+ +  R+ L +  +  E    +N    G +P    R+ +T V +  G 
Sbjct: 514 KEVLLELKVTPTITNDNRVFLNMNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGE 573

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           T+V+ G+ + + ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 574 TVVIGGVYEFNDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 627


>gi|90410268|ref|ZP_01218284.1| general secretion pathway protein D precursor [Photobacterium
           profundum 3TCK]
 gi|90328509|gb|EAS44793.1| general secretion pathway protein D precursor [Photobacterium
           profundum 3TCK]
          Length = 406

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 24/186 (12%)

Query: 224 SGPSKSFAADF-GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           S P  S    F GG  + + GD S            ++ A+ +    + L++P L  +  
Sbjct: 219 SNPVSSIKESFKGGNIIYDKGDVS-----------ALVTAITQNQNTKLLSKPYLLVMDR 267

Query: 283 QSASFTSGGQ--HLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           +  S   G     L  T +S+ G+    +   + G+ L   P +++   +    QT  S 
Sbjct: 268 EKGSINVGQNVPFLVSTETSNNGSLVQKIERQNVGLGLSVVPHIVNDSVVLGINQTSSS- 326

Query: 339 PVIGVNAGDMPSYRV---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
               V+  D+ S  +   R+ +T V++  G +I+L GL+ D+ ++ + G+PLL  IP +G
Sbjct: 327 ----VSDSDIASDIITNNREINTVVQVLDGQSIILGGLVSDESRKSESGVPLLKDIPWIG 382

Query: 396 ALFRNS 401
            LFR +
Sbjct: 383 GLFRTT 388


>gi|291086622|ref|ZP_06356285.2| type III secretion outer membrane pore, YscC/HrcC family
           [Citrobacter youngae ATCC 29220]
 gi|291067473|gb|EFE05582.1| type III secretion outer membrane pore, YscC/HrcC family
           [Citrobacter youngae ATCC 29220]
          Length = 505

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 33/247 (13%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKF----VSEGGDFS 246
           +D + + V+I +V  + L  +G   +      G +     +   GG +    ++ G DF 
Sbjct: 277 QDAIEITVSIIDVNAEDLGALGIDWAANADIGGMNLQLNTNLASGGGYATSVINNGSDFM 336

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           VK           + ALE+ +  + L++P++  ++   A          K V       +
Sbjct: 337 VK-----------VSALEQKSQAKILSQPSVVTLNNVQAVLDKNTTFYTKLVGDKIAQLA 385

Query: 307 VTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359
             T   G ++  TP V+          + L IQ    +    V A D MP  +  + DT 
Sbjct: 386 SITS--GTLMQVTPRVVKDDEGTAEVLLLLSIQDGSQQQSSAVVAADAMPQVQNSEIDTQ 443

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFIAATPFL 418
             L SG +++L G ++D      + I    KIPILG ++   + F  +ET        FL
Sbjct: 444 ATLKSGQSLLLGGFIQD------QDIVTERKIPILGDIYWIGNFFKSKETTKIQTVRLFL 497

Query: 419 VKPVAMR 425
           +K V ++
Sbjct: 498 IKAVPLK 504


>gi|15600233|ref|NP_253727.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa PAO1]
 gi|12230952|sp|P34750|PILQ_PSEAE RecName: Full=Fimbrial assembly protein pilQ; Flags: Precursor
 gi|9951330|gb|AAG08425.1|AE004917_4 Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa PAO1]
          Length = 714

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 5/205 (2%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           TG+S  PS     D G K  + G    +  + D    +  L A+E+      +++P +  
Sbjct: 511 TGTSKSPSPFV--DLGAKDATSG--IGIGFITDNIILDLQLSAMEKTGNGEIVSQPKVVT 566

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
              ++A    G +  Y+  SSS  ATS +  +  + L  TP +    RI + ++     P
Sbjct: 567 SDKETAKILKGSEVPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAP 625

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                   +P     + +  + +  G TIV+ G+  ++  +  E +P L ++P LG LFR
Sbjct: 626 DYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLGELPYLGRLFR 685

Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424
                  + E+ +  TP ++   A+
Sbjct: 686 RDTVTDRKNELLVFLTPRIMNNQAI 710


>gi|317050393|ref|YP_004111509.1| type II and III secretion system protein [Desulfurispirillum
           indicum S5]
 gi|316945477|gb|ADU64953.1| type II and III secretion system protein [Desulfurispirillum
           indicum S5]
          Length = 506

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 29/242 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-- 252
           QV ++  I EV  +    +G   +   S+           GG F   GGD +  GV+   
Sbjct: 261 QVLIEAQIFEVVLNDSHSLGIDWTNAFSAGSGVGIIGQATGGSFGLPGGDMAT-GVVQYT 319

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---SSTGA--TSV 307
           R +F  +L  +  A  +  L+ P +  ++ Q+A  +SG    + T     S  G     +
Sbjct: 320 RNNFTGMLQVMRNAGNLEALSNPRIRVMNSQTAIISSGRITPFWTKRVDYSEVGGQINRI 379

Query: 308 TTHDY-----GVVLHFTPTVLSPGRIGLRI------------QTEVSEPVIGVNAGDMPS 350
            T+D      G+ +  TP +   G I L +            QT+ S  +I V+A   P 
Sbjct: 380 ETYDRRDVLSGISMGVTPVIAPDGSILLTVIPVSTNFEEIDQQTDSSGDLI-VSA---PV 435

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +++A T + +     +V+ GL+    ++  + +  LS IP+LG LFR SR  +E  E+
Sbjct: 436 VNMKEAGTIIRVQDNDMVVIGGLISTSTRRETQEVSGLSAIPLLGHLFRGSRDVQERREL 495

Query: 411 FI 412
            I
Sbjct: 496 VI 497


>gi|257142080|ref|ZP_05590342.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 598

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 437 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 493

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 494 LPMVVEEGGRTQIKLDVRIVDGELSQQRVD----NIPVIVSNEINTQAFIEQGQALLIAG 549

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P+LGALFR++      +E     TP +++P
Sbjct: 550 YKVDARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 598


>gi|254448307|ref|ZP_05061769.1| general secretion pathway protein D [gamma proteobacterium
           HTCC5015]
 gi|198262174|gb|EDY86457.1| general secretion pathway protein D [gamma proteobacterium
           HTCC5015]
          Length = 694

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 13/212 (6%)

Query: 214 GFQHSITGSSSGPS--KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           G   + TG  SG S    F   FG +  S G  F+  G+L   + +T  + L    +I T
Sbjct: 408 GIAAASTGDGSGASVPNGFTVGFGDRDNS-GNVFA--GILRAVASDTEANLLS-TPSIVT 463

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIG 329
           L       + GQ+  F +G    Y T SS       +V   D GV L  TP +     I 
Sbjct: 464 LDNEEAEIVVGQNVPFVTGS---YTTASSGANNPFQTVERQDVGVTLKITPQINEGDVIR 520

Query: 330 LRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           L I Q   S     V +G + + + R+  T+V +  G  +VL GL+ D  ++    +PLL
Sbjct: 521 LDIEQEASSVVESSVASGQLITNK-REIKTSVMIEDGQMLVLGGLIDDQTRKSLFKVPLL 579

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             IP+LG LF+    + ++  + +   P +++
Sbjct: 580 GDIPLLGRLFQYRTNSNDKRNLMVFLHPKILR 611


>gi|149200051|ref|ZP_01877076.1| Peptidase M41, FtsH [Lentisphaera araneosa HTCC2155]
 gi|149136809|gb|EDM25237.1| Peptidase M41, FtsH [Lentisphaera araneosa HTCC2155]
          Length = 825

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 120/299 (40%), Gaps = 64/299 (21%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----------QHSITGSSSGPSKSFA 231
           + ++N LN  G  QV ++  + ++  + ++++GF           H++TG       +  
Sbjct: 509 QDIINNLN-TGAAQVNVEAKVVDITWNAMQELGFLWRWTGPRTPNHTLTGDRIFAQSNTP 567

Query: 232 ADFGGKF-----------VSEGGDFSVKG--VLDRFSFETVLHALERATAIRTLAEPTLT 278
           A  G +F            S+ G   +    +      + ++ AL+++     L  P + 
Sbjct: 568 ASGGERFDNNIRGINEVVTSQEGPVQLAADLIFGNQELQMMIRALDQSDTNEILMAPNVL 627

Query: 279 AISGQSA--SFTSGGQHLYKT----VSSSTGATSVT-----THDYGVVLHFTPTV----- 322
             SG++A     +  Q + +      S+ST     T       D G VL  TP V     
Sbjct: 628 TKSGETAVIRVVTSQQFVEEWEEGEFSNSTEIVPSTPTFGEEKDIGFVLSVTPEVDPNNT 687

Query: 323 -----LSPGRI-------GLRIQTEVSEPVIGVNAG----------DMPSYRVRKADTTV 360
                ++P  I        L   TE+   +  +N             MP + VR  +T V
Sbjct: 688 VITMEVNPEFIEFLGYDTDLNTSTELQ--LFDINGSPFTYQAEFIYSMPIFEVRSIETRV 745

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +L  G T  L GL+++++  + + IP +S IP +G LF+N     E+  + +  T  L+
Sbjct: 746 KLWDGQTFTLGGLIRENVWTVDDSIPYISAIPFVGRLFQNKGEASEKRSLLMFITARLI 804


>gi|120609694|ref|YP_969372.1| type IV pilus secretin PilQ [Acidovorax citrulli AAC00-1]
 gi|120588158|gb|ABM31598.1| type IV pilus secretin PilQ [Acidovorax citrulli AAC00-1]
          Length = 715

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E     + ++ P L       A    G ++ Y +V++  GAT++      + L  T
Sbjct: 552 LSAMEADGQGKVVSSPRLITADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVT 610

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G I L +  +V++   G       +       T V + +GGT+V+ G+ + +  
Sbjct: 611 PQITPEGNIILDL--DVNKDSKGETTTQGVAIDTNHVKTQVLVENGGTVVIGGIFRLEET 668

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  IPLL  +P++G LF+N      + E+ +  TP ++
Sbjct: 669 NQENKIPLLGDVPVVGNLFKNRTRESTKREMLVFITPKVI 708


>gi|116626816|ref|YP_828972.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229978|gb|ABJ88687.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 752

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 99/240 (41%), Gaps = 20/240 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDR 253
           QV +   I EV  +     G    +    +GP S++  A  G      GG     G L  
Sbjct: 491 QVLIDAKIYEVDLNGAFAAGVSAYLDKKDTGPFSRTLNAATGA-----GGLTLTTGALVL 545

Query: 254 FSFE--TVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLYKTVSSSTGA 304
            S E    L A E A+  + ++ P++ A     A+   G        Q +   V SS  +
Sbjct: 546 RSHELLAALTASETASHSKVISAPSIIATDSVPATLNVGDDVPVLTSQAVAGGVQSSGSS 605

Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTT 359
               +V+    GV L     V S G + L +   VS  +P    +A   PS+  R   T 
Sbjct: 606 VFTNTVSNRSTGVTLSIMARVNSSGIVTLIVNQNVSSPQPPPANSAIQSPSFSNRSFQTQ 665

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +  G T+ + G++ +   Q   G+P L ++P +GA F    + +  TE+ +  TP ++
Sbjct: 666 LTVQDGDTVAIGGIILESNLQSSAGVPFLHRLPGIGAAFGAKSYTKSRTELVVFLTPRVI 725


>gi|107104140|ref|ZP_01368058.1| hypothetical protein PaerPA_01005213 [Pseudomonas aeruginosa PACS2]
          Length = 714

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 5/205 (2%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           TG+S  PS     D G K  + G    +  + D    +  L A+E+      +++P +  
Sbjct: 511 TGTSKSPSPFV--DLGAKDATSG--IGIGFITDNIILDLQLSAMEKTGNGEIVSQPKVVT 566

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
              ++A    G +  Y+  SSS  ATS +  +  + L  TP +    RI + ++     P
Sbjct: 567 SDKETAKILKGSEVPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAP 625

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                   +P     + +  + +  G TIV+ G+  ++  +  E +P L ++P LG LFR
Sbjct: 626 DYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLGELPYLGRLFR 685

Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424
                  + E+ +  TP ++   A+
Sbjct: 686 RDTVTDRKNELLVFLTPRIMNNQAI 710


>gi|51593921|ref|YP_068488.1| yscC; putative type III secretion protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|51591618|emb|CAF25422.1| yscC; putative type III secretion protein [Yersinia
           pseudotuberculosis IP 32953]
          Length = 607

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           ++ + ++I ++  D L ++G    + G  +G +        G   +   + ++  ++D  
Sbjct: 281 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDQSNIASNGALGSLIDAR 339

Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
             + +L   + LE   + + ++ PTL  ++ ++A         Y    +      +    
Sbjct: 340 GLDYLLARVNLLENEGSAQVVSRPTL--LTQENAQAVIDHHETYYVKVTGKEVAELKGIT 397

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGT 367
           YG +L  TP VL+ G    I L +  E        +  D +P+      DT   +  G +
Sbjct: 398 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDGIPTISRTVVDTVARVGHGQS 457

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412
           +++ G+ +D++      +PLL  IP LGALF R S   R    +FI
Sbjct: 458 LIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFI 503


>gi|296314608|ref|ZP_06864549.1| type IV pilus secretin PilQ [Neisseria polysaccharea ATCC 43768]
 gi|296838653|gb|EFH22591.1| type IV pilus secretin PilQ [Neisseria polysaccharea ATCC 43768]
          Length = 505

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 25/255 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K+++ L++  + QV ++  I E      + +G +   TG         A  +G     E
Sbjct: 238 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFE 296

Query: 242 GGD-------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           GGD                    S+   +   +    L A E  +  +TLA P +   + 
Sbjct: 297 GGDGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNR 356

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPV 340
           + A   SG +  Y+  SSS  ++S TT     VL  T  P +   G+I + ++     PV
Sbjct: 357 KEAKIESGTEIPYQDTSSSGSSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPV 416

Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF- 398
              V        + +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF 
Sbjct: 417 DCTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFK 476

Query: 399 -RNSRFNREETEIFI 412
            R    NR E  IFI
Sbjct: 477 TRGKSTNRRELLIFI 491


>gi|162417759|ref|YP_001604484.1| type III secretion outer membrane pore YscC [Yersinia pestis
           Angola]
 gi|294496845|ref|YP_003560542.1| type III secretion outer membrane pore YscC [Yersinia pestis
           Z176003]
 gi|162354779|gb|ABX88726.1| type III secretion outer membrane pore YscC [Yersinia pestis
           Angola]
 gi|294352433|gb|ADE66490.1| type III secretion outer membrane pore YscC [Yersinia pestis
           Z176003]
          Length = 612

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           ++ + ++I ++  D L ++G    + G  +G +        G   +   + ++  ++D  
Sbjct: 286 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDQSNIASNGALGSLIDAR 344

Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
             + +L   + LE   + + ++ PTL  ++ ++A         Y    +      +    
Sbjct: 345 GLDYLLARVNLLENEGSAQVVSRPTL--LTQENAQAVIDHHETYYVKVTGKEVAELKGIT 402

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGT 367
           YG +L  TP VL+ G    I L +  E        +  D +P+      DT   +  G +
Sbjct: 403 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDGIPTISRTVVDTVARVGHGQS 462

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412
           +++ G+ +D++      +PLL  IP LGALF R S   R    +FI
Sbjct: 463 LIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFI 508


>gi|197121137|ref|YP_002133088.1| general secretion pathway protein D [Anaeromyxobacter sp. K]
 gi|196170986|gb|ACG71959.1| general secretion pathway protein D [Anaeromyxobacter sp. K]
          Length = 904

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 97/240 (40%), Gaps = 40/240 (16%)

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           Q G  +S+  SS+     F   + G   +E  D     +    S   ++ AL+  + +  
Sbjct: 532 QTGRVNSLDMSSAIALGGFLTGYTGPISAELKDLGFGNIP---SLGLLIQALQSNSDVNV 588

Query: 272 LAEPTLTAIS--------GQSASFTSG-----------GQHLYKTVSSSTGATSVTT--- 309
           L+ P L A          GQ+  F SG           G     TV S+ G   +++   
Sbjct: 589 LSTPHLLATDNEESEITVGQNVPFQSGYAPSGLSNLLSGSSATSTVGSALGTQGLSSLYA 648

Query: 310 ----HDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYRVRKADTTV 360
                +  + L   P +   G I L I+ +  E     P +G      P+   R   T +
Sbjct: 649 PIQRQNVELKLKIKPQINEGGNIRLTIEEQTEEIAEKDPQLG------PTTAKRSVKTQI 702

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                 TIV+ GL++D   +    IP L  +PILG LFR++   +++  + +  TP++++
Sbjct: 703 VARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFRDTTTTKQKVNLLLFLTPYIIR 762


>gi|107024260|ref|YP_622587.1| Type IV pilus secretin PilQ [Burkholderia cenocepacia AU 1054]
 gi|105894449|gb|ABF77614.1| Type IV pilus secretin PilQ [Burkholderia cenocepacia AU 1054]
          Length = 371

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 212 GSELPYQAKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPA 269

Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
              +   T VE+ +GGT+ + G    L ++D+ +    +PLL KIP LGALFR+     +
Sbjct: 270 IHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTR----VPLLGKIPFLGALFRHRAQRDQ 325

Query: 407 ETEIFIAATPFLV 419
             E+ +  TP +V
Sbjct: 326 RNELVVFITPTVV 338


>gi|254374542|ref|ZP_04990023.1| type IV pilin multimeric outer membrane protein [Francisella
           novicida GA99-3548]
 gi|151572261|gb|EDN37915.1| type IV pilin multimeric outer membrane protein [Francisella
           novicida GA99-3548]
          Length = 594

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 10/168 (5%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + ALE  +    +A P L   + Q A F   G+ +    ++++GA +V   +  + L  T
Sbjct: 425 IRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVT 483

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-------YRVRKADTTVELPSGGTIVLAG 372
           P +   G I + I   V++  +G + G  P         + R+  T V    G T+V+ G
Sbjct: 484 PQIAPDGNIIMDIL--VTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGG 541

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +   ++ +  IP L  IP LG LF  ++   +++E+ I  TP +++
Sbjct: 542 IYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKIIE 589


>gi|87306498|ref|ZP_01088645.1| general secretory pathway protein D-like [Blastopirellula marina DSM
            3645]
 gi|87290677|gb|EAQ82564.1| general secretory pathway protein D-like [Blastopirellula marina DSM
            3645]
          Length = 1313

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 41/71 (57%)

Query: 349  PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            P + +    TTV +P GGT++L G+ +   ++ + G+P++SK+P +  LFRN    R   
Sbjct: 1227 PEFSIITVTTTVSVPDGGTVLLGGIKRLSEERREAGVPIVSKLPYINRLFRNVGIGRSTQ 1286

Query: 409  EIFIAATPFLV 419
             + +  TP ++
Sbjct: 1287 SLMMMVTPRII 1297


>gi|118497727|ref|YP_898777.1| Type IV pili secretin component [Francisella tularensis subsp.
           novicida U112]
 gi|194323699|ref|ZP_03057475.1| type IV pilus secretin PilQ family protein, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|82453010|gb|ABB76143.1| PilQ [Francisella novicida]
 gi|118423633|gb|ABK90023.1| Type IV pili secretin component [Francisella novicida U112]
 gi|194322063|gb|EDX19545.1| type IV pilus secretin PilQ family protein, putative [Francisella
           tularensis subsp. novicida FTE]
          Length = 594

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 10/168 (5%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + ALE  +    +A P L   + Q A F   G+ +    ++++GA +V   +  + L  T
Sbjct: 425 IRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVT 483

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-------YRVRKADTTVELPSGGTIVLAG 372
           P +   G I + I   V++  +G + G  P         + R+  T V    G T+V+ G
Sbjct: 484 PQIAPDGNIIMDIL--VTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGG 541

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +   ++ +  IP L  IP LG LF  ++   +++E+ I  TP +++
Sbjct: 542 IYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKIIE 589


>gi|54294209|ref|YP_126624.1| type II protein secretion LspD [Legionella pneumophila str. Lens]
 gi|53754041|emb|CAH15514.1| type II protein secretion LspD [Legionella pneumophila str. Lens]
          Length = 791

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 109/257 (42%), Gaps = 29/257 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K V++ L+I    Q+ ++  +AEV    +  +G +   +   +G  K F   F       
Sbjct: 490 KTVISQLDIKPA-QLLIEALVAEVDEKDVNNLGIEWG-SNQQTGNPKDFRPGFA------ 541

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299
               + K  +D   F+  ++AL R      L+ P++  +  + A    G Q    T S  
Sbjct: 542 --IINSKTRID--DFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597

Query: 300 ----SSTGATSVTTHD-YGVVLHF--TPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPS 350
                +T A+  TT D   V LH    P +     I L+I    +  +P           
Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATSTTDNTTTP 657

Query: 351 -YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
            + +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++  
Sbjct: 658 TFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRV 717

Query: 410 IFIAATPFLVKPVAMRD 426
           + +      +KP+ +R+
Sbjct: 718 LMV-----FIKPIILRN 729


>gi|115380040|ref|ZP_01467087.1| general secretion pathway protein D [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820456|ref|YP_003952814.1| general secretion pathway protein D [Stigmatella aurantiaca
           DW4/3-1]
 gi|115362957|gb|EAU62145.1| general secretion pathway protein D [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393528|gb|ADO70987.1| General secretion pathway protein D [Stigmatella aurantiaca
           DW4/3-1]
          Length = 850

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 46/226 (20%)

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           F A   G  + E  +  +    D  +F  VLHAL++ + +  L+ P L     + A  T 
Sbjct: 495 FLAGLQGPVIPELKNLGI----DVPAFGVVLHALQQNSDVNVLSTPHLLTSDNEEAEITV 550

Query: 290 GGQHLYKTVSSSTGA------------------------------TSVTTHDYGVVLHFT 319
           G Q++      S G+                                +T  +  + L   
Sbjct: 551 G-QNVPFQAGFSPGSLGGTIGGIGGVTGGTNTGLSSALLGLGSSFAPITRQNVELKLTVK 609

Query: 320 PTVLSPGRIGLRI--QTE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           P +     I + I  QTE    S+PV+G      P+   R A TTV      T+V+ G++
Sbjct: 610 PQINESDFIRMVITEQTEEIASSDPVLG------PTTSKRSAKTTVVAKDQETVVIGGIM 663

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +D   +    +P+L  IP+LG LFR +   + +T + +  TP++++
Sbjct: 664 QDRTIESVSKVPILGDIPLLGHLFRETTRRKTKTNLLLFLTPYIIR 709


>gi|186897497|ref|YP_001874608.1| YscC/HrcC family type III secretion outer membrane protein
           [Yersinia pseudotuberculosis PB1/+]
 gi|186700523|gb|ACC91151.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 607

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           ++ + ++I ++  D L ++G    + G  +G +        G   +   + ++  ++D  
Sbjct: 281 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDKSNIASNGALGSLIDAR 339

Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
             + +L   + LE   + + ++ PTL  ++ ++A         Y    +      +    
Sbjct: 340 GLDYLLARVNLLENEGSAQVVSRPTL--LTQENAQAVIDHHETYYVKVTGKEVAELKGIT 397

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGT 367
           YG +L  TP VL+ G    I L +  E        +  D +P+      DT   +  G +
Sbjct: 398 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDGIPTISRTVVDTVARVGHGQS 457

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412
           +++ G+ +D++      +PLL  IP LGALF R S   R    +FI
Sbjct: 458 LIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFI 503


>gi|16082740|ref|NP_395186.1| outer membrane secretin precursor [Yersinia pestis CO92]
 gi|31795269|ref|NP_857730.1| outer membrane secretin precursor [Yersinia pestis KIM]
 gi|31795473|ref|NP_857925.1| outer membrane secretin precursor [Yersinia pestis KIM]
 gi|45478532|ref|NP_995359.1| putative type III secretion protein YscC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108793654|ref|YP_636804.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|145597132|ref|YP_001154596.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|149192687|ref|YP_001293919.1| Type III secretion outer membrane pore protein [Yersinia pestis
           CA88-4125]
 gi|165927821|ref|ZP_02223653.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165940102|ref|ZP_02228636.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011759|ref|ZP_02232657.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214450|ref|ZP_02240485.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401969|ref|ZP_02307455.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422893|ref|ZP_02314646.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426864|ref|ZP_02318617.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229896868|ref|ZP_04512028.1| Type III secretion outer membrane pore protein [Yersinia pestis
           Pestoides A]
 gi|229900223|ref|ZP_04515359.1| Type III secretion outer membrane pore protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|270491097|ref|ZP_06208169.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis KIM D27]
 gi|322836578|ref|YP_004210074.1| type III secretion outer membrane pore YscC [Yersinia pestis Java
           9]
 gi|155446|gb|AAA27638.1| KIM5 [Yersinia pestis]
 gi|2996229|gb|AAC62552.1| Yop proteins translocation protein C homolog [Yersinia pestis KIM
           10]
 gi|3822061|gb|AAC69781.1| type III secretion protein [Yersinia pestis KIM 10]
 gi|5832472|emb|CAB54929.1| putative type III secretion protein [Yersinia pestis CO92]
 gi|45357154|gb|AAS58550.1| putative type III secretion protein YscC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108782201|gb|ABG16256.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|145212900|gb|ABP42306.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|148872345|gb|ABR14835.1| Type III secretion outer membrane pore protein [Yersinia pestis
           CA88-4125]
 gi|165912012|gb|EDR30655.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920257|gb|EDR37558.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989366|gb|EDR41667.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204343|gb|EDR48823.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958183|gb|EDR55204.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048697|gb|EDR60105.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054163|gb|EDR63990.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229686743|gb|EEO78823.1| Type III secretion outer membrane pore protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229700139|gb|EEO88178.1| Type III secretion outer membrane pore protein [Yersinia pestis
           Pestoides A]
 gi|262364013|gb|ACY64350.1| outer membrane secretin precursor [Yersinia pestis D182038]
 gi|270334840|gb|EFA45619.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis KIM D27]
 gi|317374471|gb|ADV16646.1| type III secretion outermembrane pore forming protein [Yersinia
           pestis]
 gi|321161352|gb|ADW67058.1| type III secretion outer membrane pore YscC [Yersinia pestis Java
           9]
          Length = 607

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           ++ + ++I ++  D L ++G    + G  +G +        G   +   + ++  ++D  
Sbjct: 281 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDQSNIASNGALGSLIDAR 339

Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
             + +L   + LE   + + ++ PTL  ++ ++A         Y    +      +    
Sbjct: 340 GLDYLLARVNLLENEGSAQVVSRPTL--LTQENAQAVIDHHETYYVKVTGKEVAELKGIT 397

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGT 367
           YG +L  TP VL+ G    I L +  E        +  D +P+      DT   +  G +
Sbjct: 398 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDGIPTISRTVVDTVARVGHGQS 457

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412
           +++ G+ +D++      +PLL  IP LGALF R S   R    +FI
Sbjct: 458 LIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFI 503


>gi|90412668|ref|ZP_01220670.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum 3TCK]
 gi|90326476|gb|EAS42888.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum 3TCK]
          Length = 406

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 24/186 (12%)

Query: 224 SGPSKSFAADF-GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           S P  S    F GG  + + GD S            ++ A+ +    + L++P L  +  
Sbjct: 219 SNPVASIKESFKGGNIIYDKGDVS-----------ALVTAITQNQNTKLLSKPYLLVMDR 267

Query: 283 QSASFTSGGQ--HLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           +  +   G     L  T +S+ G+    +   + G+ L   P +++   +    QT  S 
Sbjct: 268 EKGAINVGQNVPFLVSTETSNNGSLVQKIERQNVGLGLSVVPHIVNDSVVLAINQTSSS- 326

Query: 339 PVIGVNAGDMPSYRV---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
               V+  D+ S  +   R+ +T V++  G +I+L GL+ D+ ++ + G+PLL  IP +G
Sbjct: 327 ----VSDSDIASDIITNNREINTVVQVLDGQSIILGGLVSDESRKSESGVPLLKDIPWIG 382

Query: 396 ALFRNS 401
            LFR +
Sbjct: 383 GLFRTT 388


>gi|313202169|ref|YP_004040827.1| type IV pilus secretin pilq [Methylovorus sp. MP688]
 gi|312441485|gb|ADQ85591.1| type IV pilus secretin PilQ [Methylovorus sp. MP688]
          Length = 714

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           + ++ P +T  + + A    G +  Y   SSS GATSV   D  + L  TP V    +I 
Sbjct: 561 KVVSSPRVTTANQKKAQIQQGTKIPYLRASSS-GATSVQFVDATLSLEVTPQVTPDDKII 619

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           + +   + +  +G     +PS   +  DT V + +G T VL G+ +   +   + +P   
Sbjct: 620 MDL--TIKKDRVGQIFSGVPSIETQSVDTQVLVSNGETAVLGGIYEQTERNDVDKVPFFG 677

Query: 390 KIPILGALFRNSRFNREETEIFIAATP 416
            +P +G  F+      ++TE+ I  TP
Sbjct: 678 DLPFVGNAFKRRVRQNDKTELLIFITP 704


>gi|28373014|ref|NP_783687.1| hypothetical protein pYVa12790_p34 [Yersinia enterocolitica]
 gi|32470300|ref|NP_863535.1| hypothetical protein pYVe8081_p30 [Yersinia enterocolitica]
 gi|122815824|ref|YP_001004090.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|14579358|gb|AAK69235.1|AF336309_30 YscC [Yersinia enterocolitica]
 gi|23630586|gb|AAN37542.1| YscC [Yersinia enterocolitica]
 gi|121663698|emb|CAL10060.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 607

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 13/227 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           ++ + ++I ++  D L ++G    + G  +G +        G   +   + ++  ++D  
Sbjct: 281 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDQSNIASNGALGSLIDAR 339

Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
             + +L   + LE   + + ++ PTL       A       +  K            T  
Sbjct: 340 GLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSETYYVKVTGKEVAELKGIT-- 397

Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           YG +L  TP VL+ G      + L I+    +P      G +P+      DT   +  G 
Sbjct: 398 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEG-IPTISRTVVDTVARVGHGQ 456

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412
           ++++ G+ +D++      +PLL  IP LGALF R S   R    +FI
Sbjct: 457 SLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFI 503


>gi|238752349|ref|ZP_04613827.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia rohdei ATCC 43380]
 gi|238709390|gb|EEQ01630.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia rohdei ATCC 43380]
          Length = 486

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 21/240 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-DR 253
           Q+ + VTI +V    + Q+G   S + S  G   SF      + +++G       V+ D 
Sbjct: 260 QIEISVTIIDVDAGDISQLGIDWSASTSIGGMGISF-----NRGLAKGNSDGFSTVIGDT 314

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +F   L+AL++ +  R L+ P++  ++   A          K            T   G
Sbjct: 315 GNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKLQGDKVAKLESVTS--G 372

Query: 314 VVLHFTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
            +L  TP ++    +      L IQ +  + V  +++  +P  +     T   L  G ++
Sbjct: 373 SLLRVTPRMIDADGVKEVLLNLNIQ-DGQQQVSLISSEPLPQIQNSDISTQATLRVGQSL 431

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK--PVAMRD 426
           +L G ++D   + +  IPLL  IP+LG LFR++     E +       FL+K  PV  R+
Sbjct: 432 LLGGFIQDKQIESQNKIPLLGDIPLLGGLFRST-----EKQSHSVVRLFLIKAVPVDARE 486


>gi|296120909|ref|YP_003628687.1| hypothetical protein Plim_0641 [Planctomyces limnophilus DSM 3776]
 gi|296013249|gb|ADG66488.1| hypothetical protein Plim_0641 [Planctomyces limnophilus DSM 3776]
          Length = 1566

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 10/67 (14%)

Query: 358  TTVELPSGGTIVLAGLLKDDIQQLKE-----GIPLLSKIPILGALFRNSRFNREETEIFI 412
            TTV +P GGT++L G     +++L+E     G+P+L+KIP +  LF+NS   RE   + +
Sbjct: 1491 TTVSVPDGGTVLLGG-----VKRLREGRNMAGVPILNKIPYVSRLFKNSGVGRETESLML 1545

Query: 413  AATPFLV 419
              TP +V
Sbjct: 1546 MVTPRIV 1552


>gi|126666716|ref|ZP_01737693.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter sp. ELB17]
 gi|126628761|gb|EAZ99381.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter sp. ELB17]
          Length = 705

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 18/200 (9%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G S   + SFA  F       GGDF V         +  L ALE       +++P +   
Sbjct: 519 GVSGDGASSFAVGF------SGGDFLV---------DLELSALESDGKAEIVSQPRVVTA 563

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
             Q+AS  SG +  ++  SSS  ATS +  +  + L  TP +    +I + +  EV++  
Sbjct: 564 DRQTASIKSGQEIPFQEASSSG-ATSTSFKEAVLSLEVTPQITPDDKIIMDL--EVTQDS 620

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            G +  + P+       T V + +G TIVL G+ +    +     P L  IP LG LF+ 
Sbjct: 621 RGEDTPNGPAINTNSVTTQVLVANGETIVLGGIFESTNTETTTKTPFLGDIPYLGRLFKR 680

Query: 401 SRFNREETEIFIAATPFLVK 420
           ++     +E+ I  TP ++K
Sbjct: 681 TQTTELRSELLIFITPKIIK 700


>gi|310923243|emb|CBW54709.1| YscC, T3SS outer membrane ring component, local similarity to
           E.coli GspD (T2SS) and to iron transporters,PMID 9427408
           [Yersinia enterocolitica (type O:8)]
          Length = 607

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 13/227 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           ++ + ++I ++  D L ++G    + G  +G +        G   +   + ++  ++D  
Sbjct: 281 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDQSNIASNGALGSLIDAR 339

Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
             + +L   + LE   + + ++ PTL       A       +  K            T  
Sbjct: 340 GLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSETYYVKVTGKEVAELKGIT-- 397

Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           YG +L  TP VL+ G      + L I+    +P      G +P+      DT   +  G 
Sbjct: 398 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEG-IPTISRTVVDTVARVGHGQ 456

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412
           ++++ G+ +D++      +PLL  IP LGALF R S   R    +FI
Sbjct: 457 SLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFI 503


>gi|238757842|ref|ZP_04619024.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia aldovae ATCC 35236]
 gi|238703827|gb|EEP96362.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia aldovae ATCC 35236]
          Length = 484

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 22/232 (9%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + + VTI +V    + Q+G   S   S  G + SF     G   + GG FS   + +  S
Sbjct: 256 IEISVTIIDVDAGDISQLGIDWSAAVSMGGGTLSF----NGPDSNTGGGFSTV-ISNTPS 310

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTHDYGV 314
           F   L ALE+ +    L++P++  ++   A          K          S+TT   G 
Sbjct: 311 FMARLVALEKNSHAYILSQPSVVTLNNIQAVLDKNITFYTKLEGDKVAKLESITT---GS 367

Query: 315 VLHFTPTVLS-PGR----IGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +L  TP +L   G+    + L IQ  + + P+    +  +P  +  +  +   L +G ++
Sbjct: 368 LLRVTPRLLEDKGKQNIMLSLNIQDGQQNAPI--SQSEPLPQVQNSEIASQATLQAGQSL 425

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +L G  +D   Q++  IPLL  IPI+G LFR S  N+  + I +    FL+K
Sbjct: 426 LLGGFKQDKQVQVQNKIPLLGDIPIIGHLFR-SDINQTNSVIRL----FLIK 472


>gi|238025976|ref|YP_002910207.1| type II/III secretion system protein [Burkholderia glumae BGR1]
 gi|237875170|gb|ACR27503.1| Type II/III secretion system protein [Burkholderia glumae BGR1]
          Length = 649

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     R ++ P +   + ++ +    G  L        G + V      + L   
Sbjct: 472 LSALEAQGRGRIVSSPRIV-TADRAPALIEQGTELPYQAKVGLGVSGVQFRRATLKLEVE 530

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G + L +  +V++  +G +    P+   +   T VE+ +GGT+ + G+ + D +
Sbjct: 531 PQITPEGHVVLDL--DVAKDSVGESTDAGPAIHTKHVRTRVEIENGGTVSIGGIYESDRR 588

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +P+L KIP+LGALFR+    +   E+ +  TP +V
Sbjct: 589 DDVTRVPVLGKIPMLGALFRHRARRQRTAELVVYITPRVV 628


>gi|258406319|ref|YP_003199061.1| type IV pilus secretin PilQ [Desulfohalobium retbaense DSM 5692]
 gi|257798546|gb|ACV69483.1| type IV pilus secretin PilQ [Desulfohalobium retbaense DSM 5692]
          Length = 719

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 83/199 (41%), Gaps = 12/199 (6%)

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDR------FSFETVLHALERATAIRTLAEPTLTAIS 281
           KS +A     F  E    +++G LD+      F  +  L   E     +T++ P L  ++
Sbjct: 527 KSLSAGVLQGFTPEVSTVNMQGALDKISGIDLFELDAQLKLGELKGVTKTISSPRLVTLN 586

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            Q A   S G  +     S +G T +   +  + L   P +    ++ L +      P  
Sbjct: 587 NQQAEI-SQGIKIANESESESGGTDIEYTEATLKLAVQPQITPDDKVILDLDIADDSPT- 644

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             N  D+ +   R A T + + +  T+VL G+ +      K  +P L  +P+LG LF+  
Sbjct: 645 -ENGEDIET---RTARTKLLVENQETVVLGGVYQVIENNEKNQVPGLGDVPLLGWLFKTD 700

Query: 402 RFNREETEIFIAATPFLVK 420
             N E  E+ I   P +++
Sbjct: 701 NVNNENRELLIFIRPTILE 719


>gi|294667368|ref|ZP_06732586.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602809|gb|EFF46242.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 648

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 7/174 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTT 309
           F+ +  L A++       ++ P +   + +      G +  Y T+S          +V  
Sbjct: 469 FNLDIELSAMQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGGGTGGQSQANVQF 528

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGG 366
            +  + L  TPT+ +  R+ L +  +  E    +N    G +P    R+ +T V +  G 
Sbjct: 529 KEVLLELKVTPTITNDNRVFLNMNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGE 588

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           T+V+ G+ + + ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 589 TVVIGGVYEFNDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642


>gi|171909907|ref|ZP_02925377.1| Type II secretory pathway component, protein D [Verrucomicrobium
           spinosum DSM 4136]
          Length = 665

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 14/187 (7%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTS-------GGQHLYKTVSSSTGATSVTTHDY 312
           L A+ +    RT++ P +   + +     S       GG       + ST  +S++    
Sbjct: 369 LRAMLKDQETRTVSYPRMVTTNNREVVIRSVVNQPVLGGSASTSLGTGSTTTSSISYLPI 428

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIV 369
           G V++  P  +   +I L +   VS  +IG   +     P    R     VEL +G T+ 
Sbjct: 429 GTVINILPKRMMDDKINLNLAITVSS-IIGTEVIQGNPYPVASSRVYSAPVELNNGYTVA 487

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + GL +   Q+ ++GIP+L KIPILG  F+     +    + I  TP L+    +RD   
Sbjct: 488 VGGLDEAREQEGEQGIPVLGKIPILGYAFKTKGKAKNHKNLMIFITPSLID---VRDGGL 544

Query: 430 PDDHYSV 436
           P+   SV
Sbjct: 545 PEKPQSV 551


>gi|284006883|emb|CBA72151.1| type III secretion component protein SctC [Arsenophonus nasoniae]
          Length = 598

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365
           YG +L  TP V+  G      + L I+    +P   GV+   +P+      DT   +  G
Sbjct: 392 YGTLLQMTPRVIQIGDKPEIHLVLHIEDGNQKPNSSGVDG--IPTINRTIIDTVARVEQG 449

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN-SRFNREETEIFIAATPFLVKPVA 423
            ++V+ G+ +D++ +    +PLL  IP+LGALFR+ S   R    IFI     + K +A
Sbjct: 450 QSLVIGGIFRDEVIKTSRKVPLLGDIPLLGALFRSQSNQTRRVVRIFIVEPKIIDKGLA 508


>gi|197286852|ref|YP_002152724.1| hypothetical protein PMI3025 [Proteus mirabilis HI4320]
 gi|227354961|ref|ZP_03839372.1| competence protein E [Proteus mirabilis ATCC 29906]
 gi|194684339|emb|CAR45956.1| putative exported protein [Proteus mirabilis HI4320]
 gi|227164748|gb|EEI49595.1| competence protein E [Proteus mirabilis ATCC 29906]
          Length = 371

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 4/150 (2%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P LTA   ++AS   G +  Y  VS       V   +  + +  TP +    +I L 
Sbjct: 224 IASPRLTAAHEKTASIKQGTEIPY--VSRDNDTIRVEFKEAVLGMEVTPIIQRSNKIRLL 281

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P I +  G      + K +  T V +  G T++L G+ +   QQ    IP LS
Sbjct: 282 LKISQNTPGIALVQGGSEHLSIDKQEIMTEVTIHDGETLMLGGIFQQKQQQHAAKIPFLS 341

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            +P+LG LF + R      E+ I  TP L+
Sbjct: 342 SLPLLGILFSHKRDQHSRHELVIFITPKLI 371


>gi|71082769|ref|YP_265488.1| type II secretion PilQ [Candidatus Pelagibacter ubique HTCC1062]
 gi|71061882|gb|AAZ20885.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1062]
          Length = 518

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 11/159 (6%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L  LE     +T++ P L  +  Q AS   G     +T+    G       D  + L  T
Sbjct: 366 LDFLEAQGLSKTVSNPKLFTLDNQQASINQG-----ETIYIDGGEGEDKPVDASLKLIVT 420

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL--PSGGTIVLAGLLKDD 377
           P ++  G + L IQ     P    N  +  S  V K +   +L    G  +V+ G+ K++
Sbjct: 421 PNIIGDGNVMLSIQVNNDTP----NRANAASVGVNKMEINTKLLVADGDIVVIGGIKKNN 476

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +   ++G+P  SK+PILG +      +    E+ +   P
Sbjct: 477 VANNRQGVPGTSKVPILGKVLSGKSNSDTMNELLVFIAP 515


>gi|78064965|ref|YP_367734.1| type II and III secretion system protein [Burkholderia sp. 383]
 gi|77965710|gb|ABB07090.1| type II and III secretion system protein [Burkholderia sp. 383]
          Length = 543

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 12/106 (11%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG--- 372
           L   P +   GR+ L +  +V++  IG      P+   +   T VE+ +GGT+ + G   
Sbjct: 409 LEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYE 466

Query: 373 -LLKDDIQQLKEGIPLLSKIPILGALFRN--SRFNREETEIFIAAT 415
            L ++D+ +    +PLL KIP LGALFR+   R  R E  +FI  T
Sbjct: 467 QLNRNDVTR----VPLLGKIPFLGALFRHRAQRDQRNELVVFITPT 508


>gi|91762809|ref|ZP_01264774.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718611|gb|EAS85261.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1002]
          Length = 518

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 11/159 (6%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L  LE     +T++ P L  +  Q AS   G     +T+    G       D  + L  T
Sbjct: 366 LDFLEAQGLSKTVSNPKLFTLDNQQASINQG-----ETIYIDGGEGEDKPVDASLKLIVT 420

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL--PSGGTIVLAGLLKDD 377
           P ++  G + L IQ     P    N  +  S  V K +   +L    G  +V+ G+ K++
Sbjct: 421 PNIIGDGNVMLSIQVNNDTP----NRANAASVGVNKMEINTKLLVADGDIVVIGGIKKNN 476

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +   ++G+P  SK+PILG +      +    E+ +   P
Sbjct: 477 VANNRQGVPGTSKVPILGKVLSGKSNSDTMNELLVFIAP 515


>gi|325917654|ref|ZP_08179848.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536118|gb|EGD07920.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 616

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 80/174 (45%), Gaps = 7/174 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--STGATSVTTHD 311
           F+ +  L A++       ++ P +   + +      G +  Y T+S   ++G +      
Sbjct: 437 FALDMELSAMQEEGRGEVVSNPRIVTSNQREGVIKQGREIGYVTISGGGASGQSQANVQF 496

Query: 312 YGVVLHF--TPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGG 366
             V+L    TPT+ +  R+ L +  +  E    +N    G +P    R+ +T V +  G 
Sbjct: 497 KEVLLELKVTPTITNDNRVFLNMNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGE 556

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           T+V+ G+ +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 557 TVVIGGVYEFTDRESIAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 610


>gi|121603667|ref|YP_980996.1| general secretion pathway protein D [Polaromonas naphthalenivorans
           CJ2]
 gi|120592636|gb|ABM36075.1| general secretion pathway protein D [Polaromonas naphthalenivorans
           CJ2]
          Length = 738

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 11/152 (7%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           I GQ+  F +G Q        S G+     ++   D G+ L   P +   G + + I  E
Sbjct: 523 IIGQNVPFVTG-QFTNTGSGGSNGSVNPFQTIERKDVGLTLRVKPQISENGTVKMAIFQE 581

Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           VS    G VN+        R  ++ V +  G  IV+ GLL+D+    +E +P L  +P+ 
Sbjct: 582 VSSVQPGSVNSVTGLITNKRSIESHVLVEDGSIIVIGGLLQDEFAGNQEKVPGLGDVPVF 641

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           G LF++   +R++T + +      ++PV +RD
Sbjct: 642 GNLFKSESRSRKKTNLMV-----FLRPVVVRD 668


>gi|313669028|ref|YP_004049312.1| pilus secretin [Neisseria lactamica ST-640]
 gi|313006490|emb|CBN87953.1| pilus secretin [Neisseria lactamica 020-06]
          Length = 726

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 110/256 (42%), Gaps = 26/256 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------GPSKSFA 231
           +K+++ L++  + QV ++  I E      + +G +   TG             G +  F 
Sbjct: 458 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFE 516

Query: 232 ADFGGKFVSE----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
              GGK+ ++              S+   +   +    L A E  +  +TLA P +   +
Sbjct: 517 GGEGGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQN 576

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEP 339
            + A   SG +  ++  SSS G++S TT     VL  T  P +   G+I + ++     P
Sbjct: 577 RKEAKIESGTEIPFQDTSSSGGSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTP 636

Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           V   V        + +  +T   + +GGT+++ G+ +++       IPLL  IP++G LF
Sbjct: 637 VDCTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKIPLLGDIPVIGNLF 696

Query: 399 --RNSRFNREETEIFI 412
             R    NR E  IFI
Sbjct: 697 KTRGKSTNRRELLIFI 712


>gi|320107861|ref|YP_004183451.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
 gi|319926382|gb|ADV83457.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
          Length = 638

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 16/158 (10%)

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------------SVTTHDYGVVLHFTPT 321
           P LTAI+  ++S     +     VSSS  A               +   D G+ L  TP 
Sbjct: 468 PILTAITTSASSSDVANELAAAGVSSSVIAQLTGSSGSGSTSTPQIQFEDIGLTLKITPR 527

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           VL  G + L +  ++ E + G    D+P    R   + V +P G T +LA L+  +  + 
Sbjct: 528 VLRSGEVQLDLDFKL-ESLAGTGVDDIPILNNRALKSVVTIPPGETTMLAALVSTNETKA 586

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G+P L  +P   +  RN+   ++  E+ I  TP +V
Sbjct: 587 LDGVPGLDNLPGFQSTDRNADGAKD--ELLITVTPHIV 622


>gi|87300799|ref|ZP_01083641.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 5701]
 gi|87284670|gb|EAQ76622.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 5701]
          Length = 911

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 338 EPVIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           +PV G    D+   R+R+ DT +V +  G T++L G++ DD  Q+    P+L  +P+LG 
Sbjct: 805 QPVPGCGFIDI--LRLRRLDTGSVRVRDGQTLILTGVISDDDFQVVSKWPILGDLPLLGQ 862

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
            FR +  +R + E+ I  TP ++
Sbjct: 863 FFRKTSGSRNKNELVILVTPRII 885


>gi|332701375|ref|ZP_08421463.1| general secretion pathway protein D [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551524|gb|EGJ48568.1| general secretion pathway protein D [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 746

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 109/264 (41%), Gaps = 45/264 (17%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH----SITGSSS-------GPSKSFAADFGGKFVSEGG 243
           QV ++V IAEV      Q+G        +TG++S        PS +F +      V   G
Sbjct: 485 QVLIEVIIAEVSLTDETQLGIDWRYLLDMTGNASIDFSLSNNPS-TFTSGLAATLVD--G 541

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--------- 294
           D               L AL  +   + L+ P + + S  S +    GQ +         
Sbjct: 542 D----------RLRATLRALASSNRTQILSSPHILS-SNHSEAKIDVGQEVPILTQTTET 590

Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPS 350
                  + S+   ++   + G++L  TP +   G + + I  E+S      V A + P 
Sbjct: 591 VDTTDPDNVSSVQQNIQYRNTGILLSVTPHINERGLVRMEISQEISSIEETSVGAINSPL 650

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +R R A TTV +    TIV+ GL++ +    +  +P + +IP+L  LF     + +  E+
Sbjct: 651 FRKRLATTTVVVNDEQTIVIGGLMEQENTDNENNVPFVRRIPLLKYLFGYELKSFDNREL 710

Query: 411 FIAATPFLVKPVAMRDLSRPDDHY 434
            I  TP +V+       SR D+ +
Sbjct: 711 LIFITPHVVE-------SREDNDF 727


>gi|285019110|ref|YP_003376821.1| type IV pilus assembly protein pilq [Xanthomonas albilineans GPE
           PC73]
 gi|283474328|emb|CBA16829.1| probable type iv pilus assembly protein pilq [Xanthomonas
           albilineans]
          Length = 639

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 8/179 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTT 309
           FS +  L AL+       ++ P +   + + A    G    Y T++  TG      +V  
Sbjct: 460 FSLDMELSALQEEGRGEVISNPRIVTSNQREAVIRQGKDIAYVTITGGTGGAAATPNVQF 519

Query: 310 HDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +  + L  TPT+    R+ L +   + EV   V   N G +P    R+ +T V +  G 
Sbjct: 520 KEVLLELKVTPTITDDNRVFLNMNVKKDEVDHYVTLQNYGTVPEINRREINTAVLVDDGQ 579

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           T+V+ G+ +   +     +P L  +P LG LF+    ++ + E+ I  TP +++ VA R
Sbjct: 580 TVVIGGVYEFTNRNSLAKVPFLGDVPFLGNLFKQRGRSKAKAELLIFVTPKVMR-VAKR 637


>gi|162454464|ref|YP_001616831.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So
           ce 56']
 gi|161165046|emb|CAN96351.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So
           ce 56']
          Length = 774

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 5/177 (2%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F++  + +  +    L A E +  +R ++ P +  +  + A  + G    +  +S+    
Sbjct: 593 FTLGSINNTVNLGVRLSAAEASGMLRVVSSPRILTLDNREARISQGTLIPFSQISAQ--G 650

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVEL 362
              T  +  + L   P V S G + + ++    EP     +  GD P+   R+A+T + +
Sbjct: 651 VQTTFQEAKLQLLVKPHVTSDGSVAMHVKINRDEPDFNQTSARGD-PTILKREAETDLLI 709

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             G T V+ G+   +  +  + +P    IP+LG LF+  R +    E+ I  TP +V
Sbjct: 710 MDGHTAVIGGIFTRNTGRNLDQVPFFGDIPVLGLLFQRRRASDTRNELVIFLTPRIV 766


>gi|254246562|ref|ZP_04939883.1| AscC [Burkholderia cenocepacia PC184]
 gi|124871338|gb|EAY63054.1| AscC [Burkholderia cenocepacia PC184]
          Length = 543

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 384 GSELPYQAKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPA 441

Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRN--SRFN 404
              +   T VE+ +GGT+ + G    L ++D+ +    +PLL KIP LGALFR+   R  
Sbjct: 442 IHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTR----VPLLGKIPFLGALFRHRAQRDQ 497

Query: 405 REETEIFIAAT 415
           R E  +FI  T
Sbjct: 498 RNELVVFITPT 508


>gi|84785906|gb|ABC62092.1| secretion and cellular translocation protein C [Chlamydophila
           psittaci]
          Length = 672

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313
           +L AL++      +  P + A   Q ASF  G    ++T S+    T   T      D G
Sbjct: 452 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIG 511

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L    TV     + L+I+  +SE +        P      A T +++P G  +V++G 
Sbjct: 512 VNLVVASTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLVMSGH 570

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE--TEIFI 412
           ++D   ++  G+PLL+ IP++  LF  +   R++  T +FI
Sbjct: 571 IRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNTMMFI 611


>gi|325529582|gb|EGD06465.1| Type II secretory pathway, component PulD [Burkholderia sp. TJI49]
          Length = 397

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 20/204 (9%)

Query: 220 TGSSSGPSKSFAADF-GGKF--VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
           TG S+G + S AA    GK      G  F  +  L    F  VL AL      R +++P+
Sbjct: 196 TGDSNGSAFSLAASLLKGKLNITLAGNPFDNQVSLSTSDFSAVLSALSSDNRFRVVSQPS 255

Query: 277 LTAISGQSASFTSGGQ-HLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           L   SG  A+F+ G +  +   VS + G+     SV   D GV+ +  P V     + L 
Sbjct: 256 LRVRSGAEATFSVGAEVPVLGAVSYAQGSGEPIQSVQYRDSGVIFNLRPQV-RESTVDLV 314

Query: 332 IQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           +  ++S   +   GVN  + P+   R+  T+V++     I+L GL ++       G+  L
Sbjct: 315 VDQQLSNFVQTTTGVN--NSPTLTKRQLTTSVQMRDREVILLGGLTEEKTSDNSTGLSFL 372

Query: 389 SKIPILGALFRNSRFNREETEIFI 412
            K      LFR++      +EI +
Sbjct: 373 PK------LFRSNTSEASNSEILL 390


>gi|225024352|ref|ZP_03713544.1| hypothetical protein EIKCOROL_01227 [Eikenella corrodens ATCC
           23834]
 gi|224942849|gb|EEG24058.1| hypothetical protein EIKCOROL_01227 [Eikenella corrodens ATCC
           23834]
          Length = 707

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 50/104 (48%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +   G + + I+          +    P    ++  T   +  GGTI+L G+ +
Sbjct: 595 LTVTPQITPDGNVIMDIKLNKDSVDENCSVLGTPCINTKELVTRAMVEDGGTIILGGIYE 654

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++    +  +PLL  IP++G LFR +R N  + E+ I  TP ++
Sbjct: 655 EENSNSQYKVPLLGDIPVVGNLFRGTRRNNSKNELLIFITPRIM 698


>gi|307610026|emb|CBW99559.1| type II protein secretion LspD [Legionella pneumophila 130b]
          Length = 791

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 113/258 (43%), Gaps = 31/258 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K V++ L+I    Q+ ++  +AEV    +  +G +   +   +G  K F   F       
Sbjct: 490 KTVISQLDIKPA-QLLIEALVAEVDEKDVNNLGIEWG-SNQQTGNPKDFRPGFA------ 541

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299
               + K  +D   F+  ++AL R      L+ P++  +  + A    G Q    T S  
Sbjct: 542 --IINSKTRID--DFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597

Query: 300 ----SSTGATSVTTHD-YGVVLH-FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350
                +T A+  TT D   V LH +    ++ G+ G+++Q +     +        +   
Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQ-GIQLQIDQGNDTLDPATATTDNTTT 656

Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
             + +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++ 
Sbjct: 657 PTFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKR 716

Query: 409 EIFIAATPFLVKPVAMRD 426
            + +      +KP+ +R+
Sbjct: 717 VLMV-----FIKPIILRN 729


>gi|292489334|ref|YP_003532221.1| type II secretion system protein OutD [Erwinia amylovora CFBP1430]
 gi|292898442|ref|YP_003537811.1| type II secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291198290|emb|CBJ45396.1| type II secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291554768|emb|CBA22567.1| Type II secretion system protein outD [Erwinia amylovora CFBP1430]
 gi|312173499|emb|CBX81753.1| Type II secretion system protein outD [Erwinia amylovora ATCC
           BAA-2158]
          Length = 645

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 5/179 (2%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
           ++  +  AL+  +    LA P++  +    A FT G      T + +T       SV   
Sbjct: 414 NWAGLFTALQTNSQNNILATPSIVTLDNMEAEFTVGQDVPILTGTQTTNTDGVYNSVDRK 473

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIV 369
             G+ L   P +     + + I+ EVS      +   +  ++  R     V + SG T+V
Sbjct: 474 SVGIKLKVKPQINKGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNAVLVESGKTVV 533

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           + GLL      ++  +P+L +IP++G LFR +   + +  + +   P +++     DL+
Sbjct: 534 VGGLLDTTHSNVESSVPVLGQIPLIGRLFRYTSDKKSKRNLMLFIRPTIIRQQDKFDLT 592


>gi|261211199|ref|ZP_05925488.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC341]
 gi|260839700|gb|EEX66311.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC341]
          Length = 571

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 5/163 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV-LHF 318
           L AL+  +    ++ P L   + Q A    G +  Y  + SS+   S  +    V+ L  
Sbjct: 409 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPY--LESSSSGASTVSFKKAVLSLKV 466

Query: 319 TPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TP +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ + 
Sbjct: 467 TPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQH 526

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 527 SINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569


>gi|90023220|ref|YP_529047.1| helix-turn-helix, AraC type [Saccharophagus degradans 2-40]
 gi|89952820|gb|ABD82835.1| type II and III secretion system protein [Saccharophagus degradans
           2-40]
          Length = 666

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 11/169 (6%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------T 305
           +F  +L AL+ ++    L+ P+L  +  Q AS + G    ++T S ST           T
Sbjct: 430 NFIALLSALQTSSDANILSTPSLVTMDNQEASISVGQSVPFRTGSYSTTGTTGSVGNPFT 489

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           ++   D G+ L  TP V    +I L I  EVS     V           K +T +    G
Sbjct: 490 TIQREDVGITLTVTPHVNEGNKILLDISQEVSSISSSVAGSADLITNQSKIETQLLANDG 549

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFI 412
             ++L GL+++D+Q     +PLL  IP+LG LF+  +++F ++   +FI
Sbjct: 550 QIVILGGLIQEDVQDGDTRVPLLGSIPLLGHLFKYQSTKFLKKNLMVFI 598


>gi|262193577|ref|YP_003264786.1| type IV pilus secretin PilQ [Haliangium ochraceum DSM 14365]
 gi|262076924|gb|ACY12893.1| type IV pilus secretin PilQ [Haliangium ochraceum DSM 14365]
          Length = 1269

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 4/168 (2%)

Query: 260  LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
            L ALE    +R ++ P +T ++   A  + G       +S++   T     D  + L  T
Sbjct: 1102 LSALEDTGTVRIISAPKITVLNNVEAEISQGVSIPISVISANGVQTQFVQAD--LSLEVT 1159

Query: 320  PTV-LSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            P V      I + +Q + +E   +   A   P+   ++A TTV +    T V+ G+   +
Sbjct: 1160 PHVSQRDCSIAMDLQIQKNEADFVNTGARGDPTILRKEASTTVLVADNETTVIGGIYTRN 1219

Query: 378  IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
                   +P L  +P+LG LF+N R N E TE+ +  TP +     +R
Sbjct: 1220 SGLSYSKVPFLGDLPLLGWLFKNRRENDERTEVLVFITPRITNKAFLR 1267


>gi|126441103|ref|YP_001059995.1| Type II secretory pathway, component PulD [Burkholderia
           pseudomallei 668]
 gi|126220596|gb|ABN84102.1| type II secretory pathway, component PulD [Burkholderia
           pseudomallei 668]
          Length = 394

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSG------GQHLYKTVSSSTGATSVTT 309
           FE  + AL   +  R +  P L   SGQ A    G      G   Y + S +    SV  
Sbjct: 232 FEAAIAALNSDSRFRVVTSPNLRVRSGQLARLNVGQSVPVVGSVSYPSASGAP-VQSVQY 290

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGG 366
            D GV+    PTV +   I L +  E+S+ V    GVN  + P+   RK +++  +  G 
Sbjct: 291 QDAGVIFQVQPTVKASA-IDLNVIEEISDFVRTTTGVN--NSPTKNTRKLESSFSVEDGD 347

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +++ GL +D    L  G+  L       +  R    N   TEI +
Sbjct: 348 AVLIGGLTQDKESHLDSGLSFLP------SWMRGRASNSSRTEILL 387


>gi|89901694|ref|YP_524165.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89346431|gb|ABD70634.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 710

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 7/168 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +   + Q  +    G  L   V+SS+GAT++      + L  T
Sbjct: 548 LSALEADGKGKVVSSPRVVT-ADQIKALIEQGTELPYQVASSSGATAIAFRKANLKLEVT 606

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G I L +  +V++  +G +     +   +   T V + +GGT+V+ G+ +    
Sbjct: 607 PQITPEGNIILDL--DVNKDTVGQSTAAGFAINTKHIKTQVLVENGGTVVIGGIFELTES 664

Query: 380 QLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLVKPVAMR 425
             +  +P L  +P +G LF  R    N++E  +FI  TP +V   A R
Sbjct: 665 DNETKVPFLGDLPGVGNLFKTRGRVSNKQEMLVFI--TPKVVADRAAR 710


>gi|307245013|ref|ZP_07527110.1| hypothetical protein appser1_2250 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306854178|gb|EFM86386.1| hypothetical protein appser1_2250 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 429

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 1/162 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   +  +A P L   + + AS   G +  Y   S      ++   +  + L  T
Sbjct: 251 LTALEQENNVEIIASPRLLTTNKKPASIKQGTEVPYVLYSRKDEVKNIEFKEAVLGLQVT 310

Query: 320 PTVLSPGRIGLR-IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P + +  +I L  + T+ S    G     + +   ++ +T V    G TIVL G+ +   
Sbjct: 311 PHISNDKQILLDLVVTQNSPNSTGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLT 370

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + ++ +P+L  IP+L  LF +S     + E+ I  TP++VK
Sbjct: 371 AKGEDRVPILGSIPVLKKLFSHSSDKISKRELVIFVTPYIVK 412


>gi|298529582|ref|ZP_07016985.1| type IV pilus secretin PilQ [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511018|gb|EFI34921.1| type IV pilus secretin PilQ [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 569

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 116/290 (40%), Gaps = 50/290 (17%)

Query: 159 RAVELS---ETFLSQSGR-NQYANSSS----------KKVMNLLNIAG--EDQVTLKVTI 202
           RA EL    E FLS+ GR  Q A +++          +++  L++     E QV ++  +
Sbjct: 295 RADELQPRIEDFLSERGRVTQDARTNTLIVRDTPSQLEEITQLIDNLDRPERQVLIEARV 354

Query: 203 A----EVRRDILKQIGFQHSITGSSSG---PSK-SFAADFGG-----KFVSEGGDFSVKG 249
                  RR++    GF +   G  S    P   +F +D  G         EG  FSV  
Sbjct: 355 VYATESFRRELGVDWGFAYQSPGLDSNIISPDTFNFPSDLEGLLGVGYMGHEGQSFSV-- 412

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                  E  L   E      T++ P +  ++ Q A    G       +     A   T 
Sbjct: 413 ------LEARLRLGESQGKSNTISAPQIMTLNNQEAKIEQGTDVAVDVID----ADLRTR 462

Query: 310 HDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +Y    + L  TP +     + L ++   + P  G N        V+KA+TT+    G 
Sbjct: 463 REYVPATLELIVTPQITPDNNLILNLEVSDNAPGEGGN------IEVKKAETTLFAEDGE 516

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           TIV+ G+ K    Q + GIP LS++PILG LF++        E+ I   P
Sbjct: 517 TIVIGGIKKLSESQRETGIPPLSRLPILGWLFKHELVEENMDELLIFIRP 566


>gi|168750719|ref|ZP_02775741.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757329|ref|ZP_02782336.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763015|ref|ZP_02788022.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769207|ref|ZP_02794214.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4486]
 gi|168769317|ref|ZP_02794324.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776690|ref|ZP_02801697.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783068|ref|ZP_02808075.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789906|ref|ZP_02814913.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC869]
 gi|168802552|ref|ZP_02827559.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC508]
 gi|195940092|ref|ZP_03085474.1| EtpD [Escherichia coli O157:H7 str. EC4024]
 gi|254667451|ref|YP_003082137.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359]
 gi|261225635|ref|ZP_05939916.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|187767920|gb|EDU31764.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015158|gb|EDU53280.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999508|gb|EDU68494.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355641|gb|EDU74060.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361611|gb|EDU80030.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4486]
 gi|189361663|gb|EDU80082.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366756|gb|EDU85172.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370555|gb|EDU88971.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC869]
 gi|189375476|gb|EDU93892.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC508]
 gi|254595803|gb|ACT75163.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359]
 gi|320187907|gb|EFW62576.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
           EC1212]
 gi|326337158|gb|EGD60994.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
           1125]
 gi|326347656|gb|EGD71374.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
           1044]
          Length = 650

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 25/161 (15%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  +L AL  ++    LA P++  +    A+F             T+ G +++ TV   
Sbjct: 414 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 473

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358
           T          G+ L   P +     + L I+ EVS   +  +        ++  R    
Sbjct: 474 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 524

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            + + +G T+V+ GLL   I+  +  +PLL  IP+LG LFR
Sbjct: 525 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFR 565


>gi|75994479|ref|YP_325593.1| type II secretion protein [Escherichia coli O157:H7 EDL933]
 gi|3822147|gb|AAC70101.1| type II secretion protein [Escherichia coli O157:H7]
          Length = 642

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 25/161 (15%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  +L AL  ++    LA P++  +    A+F             T+ G +++ TV   
Sbjct: 406 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 465

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358
           T          G+ L   P +     + L I+ EVS   +  +        ++  R    
Sbjct: 466 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 516

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            + + +G T+V+ GLL   I+  +  +PLL  IP+LG LFR
Sbjct: 517 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFR 557


>gi|262363857|gb|ACY60577.1| outer membrane secretin precursor [Yersinia pestis D106004]
          Length = 470

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 100/228 (43%), Gaps = 15/228 (6%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           ++ + ++I ++  D L ++G    + G  +G +        G   +   + ++  ++D  
Sbjct: 144 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDQSNIASNGALGSLIDAR 202

Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
             + +L   + LE   + + ++ PTL  ++ ++A         Y    +      +    
Sbjct: 203 GLDYLLARVNLLENEGSAQVVSRPTL--LTQENAQAVIDHHETYYVKVTGKEVAELKGIT 260

Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365
           YG +L  TP VL+ G      + L I+    +P   G++   +P+      DT   +  G
Sbjct: 261 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDG--IPTISRTVVDTVARVGHG 318

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412
            ++++ G+ +D++      +PLL  IP LGALF R S   R    +FI
Sbjct: 319 QSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFI 366


>gi|254255049|ref|ZP_04948366.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
 gi|124899694|gb|EAY71537.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
          Length = 552

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 14/220 (6%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            + L + I ++ R+ L Q+G     T S  G S S   +      + GG           
Sbjct: 306 HIELALWIIDLEREALDQLGVNWRGTVSLGGMSASLNMNNNTSLSTVGGT---------- 355

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL R    + ++ P +       A F S      K V     A  +    YG 
Sbjct: 356 EFIASVTALARDRRAQIVSRPVVLTQENTPAVFDSSQTFYAKLVGER--AVDLKEVTYGT 413

Query: 315 VLHFTPTVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           +++  P   +   I L +  E  S     V+   MP+    K  T   +P G ++++ G 
Sbjct: 414 MVNVVPRFNAKDDIELALNIEDGSAKSSNVDQDPMPTVNRTKISTVARVPKGKSLLVGGY 473

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412
            + +   + E IP L  +P +G LFR  +  NR+   +F+
Sbjct: 474 TRGETGDVVEKIPGLGSLPFIGGLFRFKTEVNRDTVRVFL 513


>gi|54297230|ref|YP_123599.1| type II protein secretion LspD [Legionella pneumophila str. Paris]
 gi|53751015|emb|CAH12426.1| type II protein secretion LspD [Legionella pneumophila str. Paris]
          Length = 791

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 113/258 (43%), Gaps = 31/258 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K V++ L+I    Q+ ++  +AEV    +  +G +   +   +G  K F   F       
Sbjct: 490 KTVISQLDIKPA-QLLIEALVAEVDEKDVNNLGIEWG-SNQQTGNPKDFRPGFA------ 541

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299
               + K  +D   F+  ++AL R      L+ P++  +  + A    G Q    T S  
Sbjct: 542 --IINSKTRID--DFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597

Query: 300 ----SSTGATSVTTHD-YGVVLH-FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350
                +T A+  TT D   V LH +    ++ G+ G+++Q +     +        +   
Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQ-GIQLQIDQGNDTLDPATATTDNTTT 656

Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
             + +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++ 
Sbjct: 657 PTFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKR 716

Query: 409 EIFIAATPFLVKPVAMRD 426
            + +      +KP+ +R+
Sbjct: 717 VLMV-----FIKPIILRN 729


>gi|315186870|gb|EFU20628.1| type II and III secretion system protein [Spirochaeta thermophila
           DSM 6578]
          Length = 696

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 12/173 (6%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------STGAT 305
           ++F + L+     +     A  TLTA+SG+  SF +     Y+ +          STG  
Sbjct: 500 YTFASQLNLKLEESRANIYAHTTLTALSGKDVSFQNTSTFRYRDLEVDPDTGELLSTGVI 559

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELP 363
              T   G +L+    V   G I + I   +SE     +     +P    R   T +   
Sbjct: 560 RELTS--GFILNLGGWVSGDGMITMNISATLSERSSESSDSTSAIPPTTERVVSTFLRTD 617

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           SG  + ++GL++    ++   +P+L  IP+LG LFRNS+   E+ E+ I   P
Sbjct: 618 SGKPVSISGLVQKKKTKIVNKVPVLGDIPLLGFLFRNSQEKEEDMEMVIYVVP 670


>gi|282890888|ref|ZP_06299405.1| putative type III secretion protein SctC [Parachlamydia
           acanthamoebae str. Hall's coccus]
 gi|281499242|gb|EFB41544.1| putative type III secretion protein SctC [Parachlamydia
           acanthamoebae str. Hall's coccus]
          Length = 955

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 24/229 (10%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-- 312
           SF  ++ A+   T+   +  P + A    +A    G    Y+T S S    SV T ++  
Sbjct: 720 SFGALVKAIHDKTSTNIVMNPKILAEDNVTAEIFVGENTQYQTQSISNDQGSVITTNFEY 779

Query: 313 ---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKADTTVELP 363
              G  L  TP + +   + L I+ EVS      NA  +      P+ R+ +  T V +P
Sbjct: 780 RNIGTTLKITPFLGNNDIVTLEIRQEVSSVASTTNAQALNNITPGPTTRLSRTTTRVHVP 839

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PV 422
               +V++G+++D   + +  +P L  +P++GA F +     E+  + I   P ++    
Sbjct: 840 DKYFLVISGMVQDQETRRRVSVPCLGGLPVIGAAFSDKNVTDEKRNLMIFIRPEIIDTEE 899

Query: 423 AMRDLSRPDD---HYSVE---------DDAKAFFFNRVNKIYGPKEASE 459
            +++L++       Y  E         D+A  FF  R    Y   EA E
Sbjct: 900 EVQNLTKHQQDLFRYKCETKRSWKYEVDEALDFFNLRSTNKYEACEACE 948


>gi|116688415|ref|YP_834038.1| type IV pilus secretin PilQ [Burkholderia cenocepacia HI2424]
 gi|116646504|gb|ABK07145.1| type IV pilus secretin PilQ [Burkholderia cenocepacia HI2424]
          Length = 543

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 384 GSELPYQAKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPA 441

Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRN--SRFN 404
              +   T VE+ +GGT+ + G    L ++D+ +    +PLL KIP LGALFR+   R  
Sbjct: 442 IHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTR----VPLLGKIPFLGALFRHRAQRDQ 497

Query: 405 REETEIFIAAT 415
           R E  +FI  T
Sbjct: 498 RNELVVFITPT 508


>gi|209528276|ref|ZP_03276739.1| type II and III secretion system protein [Arthrospira maxima
           CS-328]
 gi|209491296|gb|EDZ91688.1| type II and III secretion system protein [Arthrospira maxima
           CS-328]
          Length = 737

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 20/177 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F + L A   +   + L +PTL    G+SAS     Q + + + S T   + T       
Sbjct: 537 FLSTLQAQIVSGRAKILTDPTLVVKEGESASV----QLVQQVLQSRTTIITDTPSGSRET 592

Query: 316 LHFTPT------------VLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTT 359
           +   PT            +   G + + I  EVS P   V  G+    +  +R   +   
Sbjct: 593 IQPDPTNVGLTLGVNVERIDDNGFVTMSINPEVSSPGARVATGNDDFFLQVFRRSLSSGR 652

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           + L  G T++++G+++D  +     IPLL  +PI+G+LFR S  + E  E+ +  TP
Sbjct: 653 IRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPIVGSLFRRSTTSSERAEVIVLVTP 709


>gi|117924235|ref|YP_864852.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
 gi|117607991|gb|ABK43446.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
          Length = 574

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 20/164 (12%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----------STGATSVTTHDYGVVLH 317
           ++ L+ PT+ A  GQ +  + G  + Y + S            +     V T   G+++ 
Sbjct: 404 VQVLSNPTIRARHGQPSMISVGTSNTYVSESEITTTGTGTTATTQADVVVNTVFDGLMIG 463

Query: 318 FTPTVLSPGRIGLR---IQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
            TP +   GR+ +    I+++V+        V G N   +P   +++  T +E  SG  +
Sbjct: 464 VTPFIKEDGRVVMTVHPIKSDVTASSLDLVSVGGTNQVALPEVELKEMSTILETHSGDLV 523

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            L GL+  +    K G+PLL  IP+LG LF     + +  E+ I
Sbjct: 524 FLGGLIDKEKSATKTGMPLLGDIPLLGRLFSTDSSSDKTREMII 567


>gi|281356804|ref|ZP_06243295.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316931|gb|EFB00954.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 836

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 116/303 (38%), Gaps = 74/303 (24%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT---GSSS--------------GPSKSFAADFG 235
           E  V +     E+ +D LK++ F + +T   G+ +              GP+ +    + 
Sbjct: 512 EPMVQILCKFIEISQDDLKELAFNYQLTVNGGAEANVMENGKYPRDVKFGPNSNELLRYY 571

Query: 236 GKFVSEGGDFSVKGVLDRFSFETV------------LHALERATAIRTLAEPTLTAISGQ 283
               +  GD S        +F  V            L AL +A ++  L  P +T + GQ
Sbjct: 572 RDETNSSGDSSTGNPTYNSTFSYVWQNADGTAIVANLFALNQADSMDVLGAPRVTTLPGQ 631

Query: 284 SASFTSGGQHLY------------KTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGL 330
            A      +  +             T  S  G+   T++  G+     P   S P ++G+
Sbjct: 632 PAHIEMVTERYFPEDWEIVDLPNNNTGGSGDGSNEGTSYWRGISADPQPNFESEPTKLGI 691

Query: 331 --RIQTEVSE-----------PVIGVNAG-------------------DMPSYRVRKADT 358
              IQ E+ +           PV  ++                      MP +  R  +T
Sbjct: 692 VFDIQPEIDKERRTITAHVLLPVQTLSGWMIFDARTYDSDGNTDGEYYQMPIFDKRSIET 751

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + +  G T+VL G+ +D ++ + + IP+L  +PI+G LF++   + ++  + +  T  L
Sbjct: 752 DITVYDGETVVLGGVAQDKVEIVNDKIPVLGDLPIVGRLFQSKYTDSQKRNLLVFLTCRL 811

Query: 419 VKP 421
           VKP
Sbjct: 812 VKP 814


>gi|208811320|ref|ZP_03253080.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817430|ref|ZP_03258459.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4045]
 gi|208823379|ref|ZP_03263696.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395621|ref|YP_002268498.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329885|ref|ZP_03445960.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           TW14588]
 gi|208729950|gb|EDZ79167.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730607|gb|EDZ79306.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4045]
 gi|208736974|gb|EDZ84659.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157076|gb|ACI34510.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4115]
 gi|217317116|gb|EEC25549.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           TW14588]
          Length = 655

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 25/161 (15%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  +L AL  ++    LA P++  +    A+F             T+ G +++ TV   
Sbjct: 419 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 478

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358
           T          G+ L   P +     + L I+ EVS   +  +        ++  R    
Sbjct: 479 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 529

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            + + +G T+V+ GLL   I+  +  +PLL  IP+LG LFR
Sbjct: 530 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFR 570


>gi|886477|emb|CAA90274.1| SepC [Escherichia coli]
          Length = 512

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 39/227 (17%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           Q+ + V+I +V  + L+Q+G   S T     G+ +  S +   +     +S   +F ++ 
Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQVNISSSVISNASNFMIR- 333

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307
                     ++AL++ +  + L++P++  ++   A         Y  VS    A+  S+
Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLRSI 382

Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGD----MPSY 351
           T+   G +L  TP +L               R+ L IQ + ++     NA D    +P  
Sbjct: 383 TS---GTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSTLPEV 438

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           +  +  T   L +G    LA L K      K+GIPLLS IP++G+LF
Sbjct: 439 QNSEMTTEATLSAGKVYYLADLSKIKKVPSKDGIPLLSDIPVIGSLF 485


>gi|170731725|ref|YP_001763672.1| type IV pilus secretin PilQ [Burkholderia cenocepacia MC0-3]
 gi|169814967|gb|ACA89550.1| type IV pilus secretin PilQ [Burkholderia cenocepacia MC0-3]
          Length = 543

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   GR+ L +  +V++  +G      P+
Sbjct: 384 GSELPYQAKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPA 441

Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRN--SRFN 404
              +   T VE+ +GGT+ + G    L ++D+ +    +PLL KIP LGALFR+   R  
Sbjct: 442 IHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTR----VPLLGKIPFLGALFRHRAQRDQ 497

Query: 405 REETEIFIAAT 415
           R E  +FI  T
Sbjct: 498 RNELVVFITPT 508


>gi|117924415|ref|YP_865032.1| type II and III secretion system protein [Magnetococcus sp. MC-1]
 gi|117608171|gb|ABK43626.1| type II and III secretion system protein [Magnetococcus sp. MC-1]
          Length = 802

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 109/259 (42%), Gaps = 41/259 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGG----KFVSEGGD 244
           QV ++  + EV  + LK++G   S      +   S G     A   GG     F  +G +
Sbjct: 256 QVYVEGMVLEVSDEGLKELGASLSSITRGGVNSLSLGVLSPVAVSAGGGNVFSFTRDGTN 315

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302
            +V   L +      ++AL      + L+ P++  IS + A+        Y  + +ST  
Sbjct: 316 AAVNNALIK------INALVSKGEAQILSRPSILTISNRQATIQVVDVVQYPVLQNSTDA 369

Query: 303 -GATSVTTHDY-----GVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGDM------- 348
            G T ++++ +     G+ L+  P V + G  + L I   V E ++  N GD+       
Sbjct: 370 VGNTILSSYSFEAVRPGITLNLRPRVTASGHEVNLEIDVTV-ESLVTANDGDVYNNSGTL 428

Query: 349 ----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP----LLSKIPILGALFRN 400
               P    R+  T   +P     ++ GL+  D +     IP    LL+ IPILGAL  +
Sbjct: 429 LGTKPGSSSRRVQTFARIPDRMPFIIGGLVSTDREMTSNRIPVVGDLLADIPILGALVGS 488

Query: 401 SRFNREETEIFIAATPFLV 419
           +     + E+ I  TP ++
Sbjct: 489 TLRQYTKREVIIVLTPHIL 507


>gi|148358852|ref|YP_001250059.1| type II protein secretion LspD [Legionella pneumophila str. Corby]
 gi|296106898|ref|YP_003618598.1| type II protein secretion LspD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280625|gb|ABQ54713.1| type II protein secretion LspD [Legionella pneumophila str. Corby]
 gi|295648799|gb|ADG24646.1| type II protein secretion LspD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 791

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 113/258 (43%), Gaps = 31/258 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K V++ L+I    Q+ ++  +AEV    +  +G +   +   +G  K F   F       
Sbjct: 490 KTVISQLDIKPA-QLLIEALVAEVDEKDVNNLGIEWG-SNQQTGNPKDFRPGFA------ 541

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299
               + K  +D   F+  ++AL R      L+ P++  +  + A    G Q    T S  
Sbjct: 542 --IINSKTRID--DFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597

Query: 300 ----SSTGATSVTTHD-YGVVLH-FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350
                +T A+  TT D   V LH +    ++ G+ G+++Q +     +        +   
Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQ-GIQLQIDQGNDTLDPATATTDNTTT 656

Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
             + +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++ 
Sbjct: 657 PTFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKR 716

Query: 409 EIFIAATPFLVKPVAMRD 426
            + +      +KP+ +R+
Sbjct: 717 VLMV-----FIKPIILRN 729


>gi|52841551|ref|YP_095350.1| type II protein secretion LspD [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628662|gb|AAU27403.1| type II protein secretion LspD [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 791

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 113/258 (43%), Gaps = 31/258 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K V++ L+I    Q+ ++  +AEV    +  +G +   +   +G  K F   F       
Sbjct: 490 KTVISQLDIKPA-QLLIEALVAEVDEKDVNNLGIEWG-SNQQTGNPKDFRPGFA------ 541

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299
               + K  +D   F+  ++AL R      L+ P++  +  + A    G Q    T S  
Sbjct: 542 --IINSKTRID--DFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597

Query: 300 ----SSTGATSVTTHD-YGVVLH-FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350
                +T A+  TT D   V LH +    ++ G+ G+++Q +     +        +   
Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQ-GIQLQIDQGNDTLDPATATTDNTTT 656

Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
             + +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++ 
Sbjct: 657 PTFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKR 716

Query: 409 EIFIAATPFLVKPVAMRD 426
            + +      +KP+ +R+
Sbjct: 717 VLMV-----FIKPIILRN 729


>gi|10955268|ref|NP_052609.1| EtpD [Escherichia coli O157:H7 str. Sakai]
 gi|149930769|ref|YP_001294686.1| w0022 [Escherichia coli]
 gi|37695757|gb|AAR00419.1|AF401292_20 w0022 [Escherichia coli]
 gi|2598401|emb|CAA70955.1| etpD [Escherichia coli]
 gi|3337000|dbj|BAA31759.1| Type II secretion pathway related protein [Escherichia coli O157:H7
           str. Sakai]
          Length = 585

 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 25/161 (15%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  +L AL  ++    LA P++  +    A+F             T+ G +++ TV   
Sbjct: 349 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 408

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358
           T          G+ L   P +     + L I+ EVS   +  +        ++  R    
Sbjct: 409 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 459

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            + + +G T+V+ GLL   I+  +  +PLL  IP+LG LFR
Sbjct: 460 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFR 500


>gi|262401919|ref|ZP_06078484.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC586]
 gi|262351891|gb|EEZ01022.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC586]
          Length = 567

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 5/163 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV-LHF 318
           L AL+  +    ++ P L   + Q A    G +  Y  + SS+   S  +    V+ L  
Sbjct: 405 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPY--LESSSSGASTVSFKKAVLSLKV 462

Query: 319 TPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TP +    R+   L +  +     +    G+  S   ++  T V + +G T+VL G+ + 
Sbjct: 463 TPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQH 522

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 523 SINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 565


>gi|120555550|ref|YP_959901.1| type II and III secretion system protein [Marinobacter aquaeolei
           VT8]
 gi|120325399|gb|ABM19714.1| type II and III secretion system protein [Marinobacter aquaeolei
           VT8]
          Length = 733

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 12/173 (6%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSST---GATSVTTH--- 310
           VL+A   +      + P +   SG++A+   G +   L  T  S T   G T V      
Sbjct: 531 VLNAFYDSNQAVIRSSPKIMVKSGETATIEVGNEIPVLTSTRQSDTQTDGDTDVLQQFQY 590

Query: 311 -DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGT 367
              GV L   P V + G + +RI+  +SE     + GD  +P+   R  +T++ L  GG+
Sbjct: 591 RKTGVDLTVEPIVQASGLVDIRIRQSLSE-TQDTSGGDSFLPTILNRAVETSLTLRDGGS 649

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +VL GL+     Q ++G+P L K+P+LG LFR    +   TE+ +   P++V+
Sbjct: 650 VVLGGLISKTNSQGEQGVPWLGKLPLLGPLFRTDSDSTSTTELMVMVVPYVVR 702


>gi|171060077|ref|YP_001792426.1| type IV pilus secretin PilQ [Leptothrix cholodnii SP-6]
 gi|170777522|gb|ACB35661.1| type IV pilus secretin PilQ [Leptothrix cholodnii SP-6]
          Length = 726

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 2/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +       A    G +  Y+T  +   A S+      + L  T
Sbjct: 560 LSALEAEGKGKLVSSPRVVTADQVKALIEQGTELPYQTGGNQQTAPSIAFRKATLKLEVT 619

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G I + +  +V++  +G       +   +   T V + +GGT+V+ G+ +    
Sbjct: 620 PQITPEGNIIMDV--DVNKDSVGQQTLAGFAINTKHVKTQVLVENGGTVVIGGIFETTET 677

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +    +P+L  IP LG LFRN      +TE+ +  TP ++
Sbjct: 678 ESVNKVPVLGDIPFLGVLFRNKTRVANKTELLVFLTPKVI 717


>gi|330813196|ref|YP_004357435.1| hypothetical protein SAR11G3_00221 [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486291|gb|AEA80696.1| hypothetical protein SAR11G3_00221 [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 518

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 6/156 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + ALE     +T++ P +  +  Q A+ T G +  Y+   S    TS    +  + L  T
Sbjct: 363 ITALEVLGKGKTISNPKVFTLDNQIATITQGEEISYQATGSEGADTSF--KEAALKLTVT 420

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P+++  G + L I    +  V   NAG+ PS    +  T + +  G  +V+ G+ K+ + 
Sbjct: 421 PSIIGDGNVLLEIMVN-NNTVNRANAGE-PSINKMEISTKLLVADGDIVVIGGIKKNKVF 478

Query: 380 QLKEGIPLLSKIPILGALFR-NSRFNR-EETEIFIA 413
             K   P +  +P+LG LF+  S+ ++ +E  IFIA
Sbjct: 479 SSKSQTPGVGNLPVLGNLFKGKSKSDKLDELLIFIA 514


>gi|207724596|ref|YP_002254993.1| hrcc (hrpa) protein (partial sequence c terminus) [Ralstonia
           solanacearum MolK2]
 gi|206589818|emb|CAQ36779.1| probable hrcc (hrpa) protein (partial sequence c terminus)
           [Ralstonia solanacearum MolK2]
          Length = 303

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + AL++    R  A P +  +    A   +  Q+ Y  V+    A  +     GV L   
Sbjct: 142 ISALQQTNQARITASPKVATLDNTEAVMDNR-QNFYVPVAGYQSA-DLYAISAGVSLRVL 199

Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P V+  G   RI + +  E  + +     G++P     + DT   +  G ++++AG   D
Sbjct: 200 PMVVMDGGTVRIRMNVHIEDGQ-ITSQQVGNLPVTSQSEIDTQALINEGESLLIAGYSVD 258

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              +  + IP LSKIP++GALFR  +   +  +     TP ++ P
Sbjct: 259 QQAKTVDAIPGLSKIPLVGALFRTDQTTGQRFQRMFLVTPRVITP 303


>gi|253997512|ref|YP_003049576.1| type IV pilus secretin PilQ [Methylotenera mobilis JLW8]
 gi|253984191|gb|ACT49049.1| type IV pilus secretin PilQ [Methylotenera mobilis JLW8]
          Length = 719

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 11/179 (6%)

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           +S+  V         L A+E     + ++ P +   +   A   +G +  Y   SSS GA
Sbjct: 541 YSIYNVAAGLLLNLELTAMETDQRGKIVSSPRVITANQHKAKIAAGTEIPYLQASSS-GA 599

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           T+V      + L  TP +    +I + +  ++ +  +G     +PS   +  +T V + +
Sbjct: 600 TNVAFKPAVLSLEVTPQITPDEKIIMEL--DIKKDKVGQIFNGVPSIDTQNINTQVLVGN 657

Query: 365 GGTIVLAGLL----KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G T VL G+     +DD+ +    +P    +P+ G LF+      ++TE+ I  TP +V
Sbjct: 658 GETAVLGGIFEQIERDDVSK----VPFFGDLPLFGNLFKKKTRQNDKTELLIFITPKIV 712


>gi|149200050|ref|ZP_01877075.1| type 4 fimbrial biogenesis protein PilQ [Lentisphaera araneosa
           HTCC2155]
 gi|149136808|gb|EDM25236.1| type 4 fimbrial biogenesis protein PilQ [Lentisphaera araneosa
           HTCC2155]
          Length = 864

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/339 (20%), Positives = 115/339 (33%), Gaps = 106/339 (31%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT------------------------GSSSGP- 226
            E+Q+ ++    E+ +D + ++ F+ SI                         G +  P 
Sbjct: 510 AENQIIIESKFYEINQDDIDELAFEWSIARIEDGSGFTDPNAGYIGRDPSYVGGVNGDPN 569

Query: 227 -------SKSFAADFGGKFVSEGGD----------------------FSVKGVLDRFSFE 257
                  S  F+ D  G   S GGD                      F    +L   +F 
Sbjct: 570 GSLNDFLSDGFSLDKSGDLTSAGGDGLESAVRSLGSVLGAPGLSQGTFKFASILGDTTFN 629

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----------KTVSSSTGATSV 307
           T++ A+++ +    L  P +T  +G +A      +  +          +      G+ S 
Sbjct: 630 TLVSAIQQRSGEDVLNAPKVTTQNGHTAKIRVVQERYFPEEWEEPEVEQNSQGDGGSAST 689

Query: 308 TT---------HDYGVVLHFTPTVLSPGR-IGLRIQTEVSE------------------- 338
            T          D G VL  TP +    R I L+++ EV E                   
Sbjct: 690 VTPSKPVFGEPRDIGAVLTVTPQIDPDQRVIELQLKPEVIEFVEYDNTFNVDMLVGQEVT 749

Query: 339 --PVIG-----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
             P+IG                MP +  R  DTTV +  G T+ L G++ ++    ++ I
Sbjct: 750 FIPIIGNPFTVTVYTAFEQKFSMPIFESRTVDTTVRVWDGETLALGGMISENKTTYEDKI 809

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P L  IP LG  F ++     +  + I  T  L+ P  +
Sbjct: 810 PYLGDIPFLGRFFTSNGERSVKQNLIIFVTARLIDPSGL 848


>gi|319791845|ref|YP_004153485.1| general secretion pathway protein d [Variovorax paradoxus EPS]
 gi|315594308|gb|ADU35374.1| general secretion pathway protein D [Variovorax paradoxus EPS]
          Length = 770

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 27/218 (12%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           GG + +  + + F+ +   + L     + TL       I GQ+  F +G    Y + S S
Sbjct: 493 GGQYILGAIANFFNSDGDANVLSTPNLL-TLDNEEAKIIIGQNVPFPTGS---YASTSGS 548

Query: 302 TGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRK 355
            G    TT    D G+ L   PT+   G + + I  E S   +  N+    + P+   R 
Sbjct: 549 VGVNPFTTVERKDVGLTLRVRPTINENGTVRMTIFQETS--TVDQNSLANPNGPTTNKRS 606

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            +++V +  GG ++L GLL D      E IPL   IP+LG LF+N    R ++ + +   
Sbjct: 607 IESSVLVEDGGLVMLGGLLSDTYNNNIEKIPLAGDIPVLGNLFKNENRTRNKSNLMM--- 663

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
              ++P  MRD +            +AF ++R ++I G
Sbjct: 664 --FLRPAVMRDGA----------STEAFAYDRYDEIRG 689


>gi|294055809|ref|YP_003549467.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615142|gb|ADE55297.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 595

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 82/198 (41%), Gaps = 24/198 (12%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTG--- 303
            V +   F  +L ALE     + +  PT+  ++ + A F  G  +  +  T +  TG   
Sbjct: 339 AVFNADQFNVILSALETLNDTKLVTNPTVVVMNKRPAKFEVGRDYPIREITFNQETGTYE 398

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-------RKA 356
           A  V     GV L  TP VL  G I L +     +P I    G + S+         R  
Sbjct: 399 AGGVEETFIGVELEVTPEVLG-GNIHLDV-----DPTISALDGTVESFGAIDPIVARRSV 452

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALFR--NSRFNREETEIFI 412
           DT V +  G T+ L GL   D Q++  G  +P+L  IP LG LF   +    +    IFI
Sbjct: 453 DTEVIIKDGYTLALGGLA--DTQEVNSGTKVPILGDIPGLGRLFSSDSDSLGKRNLIIFI 510

Query: 413 AATPFLVKPVAMRDLSRP 430
            A     +    RD+  P
Sbjct: 511 TAKTLNPEGSDYRDVIDP 528


>gi|31742526|gb|AAK35045.2|AF330136_1 type II protein secretion LspD [Legionella pneumophila 130b]
          Length = 730

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 113/258 (43%), Gaps = 31/258 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K V++ L+I    Q+ ++  +AEV    +  +G +   +   +G  K F   F       
Sbjct: 429 KTVISQLDIKPA-QLLIEALVAEVDEKDVNNLGIEWG-SNQQTGNPKDFRPGFA------ 480

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299
               + K  +D   F+  ++AL R      L+ P++  +  + A    G Q    T S  
Sbjct: 481 --IINSKTRID--DFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 536

Query: 300 ----SSTGATSVTTHD-YGVVLH-FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350
                +T A+  TT D   V LH +    ++ G+ G+++Q +     +        +   
Sbjct: 537 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQ-GIQLQIDQGNDTLDPATATTDNTTT 595

Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
             + +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++ 
Sbjct: 596 PTFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKR 655

Query: 409 EIFIAATPFLVKPVAMRD 426
            + +      +KP+ +R+
Sbjct: 656 VLMV-----FIKPIILRN 668


>gi|261257910|ref|ZP_05950443.1| w0022 [Escherichia coli O157:H7 str. FRIK966]
          Length = 275

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 25/161 (15%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  +L AL  ++    LA P++  +    A+F             T+ G +++ TV   
Sbjct: 39  NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 98

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358
           T          G+ L   P +     + L I+ EVS   +  +        ++  R    
Sbjct: 99  T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 149

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            + + +G T+V+ GLL   I+  +  +PLL  IP+LG LFR
Sbjct: 150 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFR 190


>gi|2506491|sp|P31701|GSPD_PECCC RecName: Full=General secretion pathway protein D; AltName:
           Full=Pectic enzymes secretion protein outD; Flags:
           Precursor
          Length = 650

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 34/193 (17%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  ++ AL   +    LA P++  +    A+F             T+ G ++++TV   
Sbjct: 412 NWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERK 471

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKA 356
           T          G+ L   P +     + L I+ EVS           N G   ++  R  
Sbjct: 472 T---------VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLG--ATFNTRTV 520

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +  V + SG T+V+ GLL     +    +PLL  IP+LG LFR++    ++  + +    
Sbjct: 521 NNAVLVSSGDTVVVGGLLDKSTNESANKVPLLGDIPVLGYLFRSNSTETKKRNLML---- 576

Query: 417 FLVKPVAMRDLSR 429
             ++P  +RD S+
Sbjct: 577 -FIRPSIIRDRSQ 588


>gi|269105039|ref|ZP_06157734.1| type III secretion system outer membrane pore YscC [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160674|gb|EEZ39172.1| type III secretion system outer membrane pore YscC [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 624

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 13/217 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           + ++ + ++I ++  + L Q+G         G++S        D  G  V+ G   + K 
Sbjct: 291 QSRIEVALSIVDISANDLSQLGVDWRAGIAVGNNSILDIKTTGDVDGGDVTLGSGQTFKS 350

Query: 250 VLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +LD  +   +L     LE   + + ++ PTL       A   +      K +     A  
Sbjct: 351 LLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLIGREIAALE 410

Query: 307 VTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             T  YG +L   P ++         I L +  E    +      ++PS R  +  T   
Sbjct: 411 KVT--YGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDNVPSIRKTEISTLAT 468

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           +  G ++++ G+ +D++      +PLL  IP LGALF
Sbjct: 469 VKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALF 505


>gi|206602610|gb|EDZ39091.1| Putative type II secretion system protein D [Leptospirillum sp.
           Group II '5-way CG']
          Length = 615

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 128/311 (41%), Gaps = 41/311 (13%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           +E TLR+ I  + +  +  + TV + G V+ +  +QR +++         R+Q      +
Sbjct: 278 MEGTLRKMIPKATVSADSKAQTVSVKGTVQDVFQAQRYLDIV--------RDQL----RR 325

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V   ++IA E  +T K     +  + L    F  ++  + +G   +  A  GG     G
Sbjct: 326 EVFFRIDIA-EIDLTDKDAYG-INWNALAHGVFNSTLALTGAGAGNAGLASTGGVTTPYG 383

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295
             F    V+          ALE    +  + +P +  +SGQ  S  +        G++ +
Sbjct: 384 ASFGSAAVI---------QALETIGRVHIINQPYVGTVSGQPVSLNATTDIPYLQGEYPF 434

Query: 296 KTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLR-------IQTEVSEPVIGVNA 345
                S+   ++    Y   G+ L  TPT L   +I +        +Q  V+  + G+  
Sbjct: 435 FAGGLSSATETIPQIGYVPVGINLEVTPT-LEGDQIHMHGTVVVNSLQQFVTIDIKGIGT 493

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P    R   T +    G T+V+ GL+ +   +    +P L +IP+L  LF    + +
Sbjct: 494 FQNPEVNSRSQTTEITARDGQTVVIGGLMANTKNKTFWTVPFLGQIPVLKWLFSGYSYKK 553

Query: 406 EETEIFIAATP 416
           + TE+ +  TP
Sbjct: 554 QVTELVVIITP 564


>gi|42186|emb|CAA49645.1| outD [Pectobacterium carotovorum]
          Length = 649

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 34/193 (17%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  ++ AL   +    LA P++  +    A+F             T+ G ++++TV   
Sbjct: 411 NWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERK 470

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKA 356
           T          G+ L   P +     + L I+ EVS           N G   ++  R  
Sbjct: 471 T---------VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLG--ATFNTRTV 519

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +  V + SG T+V+ GLL     +    +PLL  IP+LG LFR++    ++  + +    
Sbjct: 520 NNAVLVSSGDTVVVGGLLDKSTNESANKVPLLGDIPVLGYLFRSNSTETKKRNLML---- 575

Query: 417 FLVKPVAMRDLSR 429
             ++P  +RD S+
Sbjct: 576 -FIRPSIIRDRSQ 587


>gi|45751739|emb|CAF25120.1| InvG protein [Burkholderia pseudomallei]
          Length = 270

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 46  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 94

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 95  RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 152

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 153 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 212

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 213 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 266


>gi|320355296|ref|YP_004196635.1| type II and III secretion system protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320123798|gb|ADW19344.1| type II and III secretion system protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 586

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 40/216 (18%)

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           DF   FVS       +  +   +F+  L+ALE       LA P LT ++GQ A  + G  
Sbjct: 382 DFSNTFVS-------RVEIPSLTFDVFLNALEEQGDTHVLANPKLTVLNGQPAIISVGKD 434

Query: 293 HLYKTVSSSTGATSVTTHD-----------YGVVLHFTPTVLSPGRIGLR---IQTEVSE 338
             Y  + S T      T D            G+ L    ++L   ++ L    I T+++ 
Sbjct: 435 VAY--IKSVTREKDSDTEDITYSAEVGNVVQGIALGVMASILDENKVILHLTPITTDLAN 492

Query: 339 -------PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG- 384
                  P+  +  G+      +P  +VR+  T VE+ +G  +++ GL+ D I+  K G 
Sbjct: 493 ATSDGEVPITTIGEGETAMSLGLPQVKVREMSTMVEVENGEMLIIGGLI-DSIEG-KTGA 550

Query: 385 -IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             P L  IP++  LF       ++ E+ I  TP ++
Sbjct: 551 FAPGLGSIPVVKYLFGVEEKTLQKRELVILLTPRII 586


>gi|108757430|ref|YP_630733.1| general secretion pathway protein D [Myxococcus xanthus DK 1622]
 gi|108461310|gb|ABF86495.1| general secretion pathway protein D [Myxococcus xanthus DK 1622]
          Length = 863

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 40/200 (20%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------- 304
           +F  VLHA+++++ +  L+ P +     + A  T G    +++  + T            
Sbjct: 516 AFGVVLHAMQQSSDVNVLSTPHILTSDNEEAEITVGQNVPFQSGFNPTSLGSLGAGVGGG 575

Query: 305 -------------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PV 340
                                +T  +  + L   P +     I L I  +  E     PV
Sbjct: 576 AGALGGGLLGGLGGLGSLYAPITRQNVELKLTVKPQINESDYIRLVINQQTEEIASTDPV 635

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +G      P+   R A TTV      T+V+ G+++D   +    +PLL  IP+LG LFR+
Sbjct: 636 LG------PTTSRRSAKTTVIARDQETLVIGGIMQDRTLESVSKVPLLGDIPLLGHLFRD 689

Query: 401 SRFNREETEIFIAATPFLVK 420
           +   + +T + +  TP++++
Sbjct: 690 TTRRKTKTNLLLFLTPYIIR 709


>gi|294670682|ref|ZP_06735557.1| hypothetical protein NEIELOOT_02404 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307570|gb|EFE48813.1| hypothetical protein NEIELOOT_02404 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 711

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           +  TP +   G+I + I+           A + P    ++ +T V +  GGT++L G+ +
Sbjct: 600 MTVTPNITPDGQIIMDIKINKDSVNSDCRATE-PCINTQRLNTNVMVEDGGTLILGGIYQ 658

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++  +    +PLL  IP++G LF++   + ++TE+ I  TP +V
Sbjct: 659 EENSEGVSKVPLLGDIPVVGNLFKSKTRSDKKTELLIFITPRIV 702


>gi|87200666|ref|YP_497923.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136347|gb|ABD27089.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 748

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 20/222 (9%)

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT------LAEPTLTAISGQSASFTSG 290
           K +S  G ++  G L   S +T L A+    A++T      L+ P +T  +   AS   G
Sbjct: 474 KLLSARGAYT--GFLTELSKDTYLGAI--INAVQTDKNSNILSTPHITTNNNVPASILFG 529

Query: 291 GQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
            +    T  + +G        ++   + G+ L  TP + +   I L ++ EVS  + G  
Sbjct: 530 QEIPVSTGEALSGGNFSDTFRTIQRQNVGIELDVTPQINASNMIRLDLRQEVSS-IAGTV 588

Query: 345 AGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +       V K +  TTV +     + L GLL D+ Q+  + +PLL  IPILG  F++  
Sbjct: 589 SKTSNELIVNKREIKTTVTVGDREIVALGGLLDDNEQRTLQKVPLLGDIPILGEAFKSRA 648

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
            +R +T + +   P +++  A R  +     Y V  DA+  F
Sbjct: 649 RSRVKTNLMVFIRPTILRNAADRQ-ALAARRYGVVRDAQVKF 689


>gi|161502058|ref|YP_001569170.1| hypothetical protein SARI_00075 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863405|gb|ABX20028.1| hypothetical protein SARI_00075 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 563

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 12/193 (6%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 348 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 406

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
            YG ++   P   + G+I + +  E       +  I  +   +P        T   +P G
Sbjct: 407 -YGTMIRVLPRFSADGQIEMSLDIEDGNDTTPQTEITASVDALPEVGRTLISTIARVPHG 465

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            ++++ G  +D      + IP L KIP +G LFR S  N+           FL++P  + 
Sbjct: 466 KSLLVGGYTRDANTDTVQSIPFLGKIPFIGGLFRYSSKNKSNV-----VRVFLIEPKEIV 520

Query: 426 DLSRPDDHYSVED 438
           D   PD   SV +
Sbjct: 521 DPLTPDASESVNN 533


>gi|45751675|emb|CAF21321.1| InvG protein [Burkholderia mallei NCTC 10247]
          Length = 272

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 48  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 96

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 97  RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 154

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 155 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 214

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 215 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 268


>gi|148241667|ref|YP_001226824.1| Type II secretory pathway, component PulD [Synechococcus sp.
           RCC307]
 gi|147849977|emb|CAK27471.1| Type II secretory pathway, component PulD [Synechococcus sp.
           RCC307]
          Length = 760

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 41/188 (21%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + AL R+++ + +A+PTL     +S+S   G   ++   SSST A           
Sbjct: 558 FFDFVKALIRSSSAKVVADPTLLVQESESSSVGVG-TTVFVNCSSSTSANGTR------- 609

Query: 316 LHFTPTVLSPGRIGLRIQTEVSE------------PV--------IGVNAG--DMPSY-- 351
            +FTP   +    GL++   VS             PV        + VN G  D+P+   
Sbjct: 610 -NFTPKKET---AGLQVDVSVSRIDDNGFVSLALNPVLKAPSGLPVPVNCGGIDLPTRDL 665

Query: 352 ---RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
               +R  +  V    G T++L G++++++ +  +  PLL  +P++G  FR S   R++ 
Sbjct: 666 AVRELRSGEFRVR--DGQTLILTGVIQEEVLESVDKWPLLGDVPLIGQFFRKSSNTRQKR 723

Query: 409 EIFIAATP 416
           E+ I  TP
Sbjct: 724 ELVIVVTP 731


>gi|94969024|ref|YP_591072.1| type II and III secretion system protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551074|gb|ABF40998.1| type II and III secretion system protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 764

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 12/163 (7%)

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----------DYGVVLHFT 319
           + +  P++ A+ GQ A+   G +    T S   G   V  +          D GV +  T
Sbjct: 406 KLIQNPSIRAVDGQKATLKIGDRIPVATGSFQPGIGGVGINPLVNTQFNYIDVGVNIDIT 465

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P + +   + +++  +VS      N G +  P+   RK +  + L  G   +L G+L+ +
Sbjct: 466 PRIHANNEVSMKLVLDVSSVTGYQNIGGIQQPTIGQRKIEHEIRLKDGEINLLGGILQSE 525

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +   G+P LS+IP+L   F      + ++E+     P +V+
Sbjct: 526 DDKTIAGLPYLSQIPLLRYFFSTDNKTKSDSEVVFVVIPHIVR 568


>gi|114321906|ref|YP_743589.1| type IV pilus secretin PilQ [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228300|gb|ABI58099.1| type IV pilus secretin PilQ [Alkalilimnicola ehrlichii MLHE-1]
          Length = 694

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E       ++ P +   + + A+   G +  Y+  ++S GAT+V   +  + L  T
Sbjct: 527 LSAMETEGRGEVISSPRVITANQREANIRQGVEIPYQEETAS-GATNVEFKEAVLGLTVT 585

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +    R+ + +  EVS   +G     +PS   +   T V + +G T+VL G+ +    
Sbjct: 586 PQITPDDRVIMNL--EVSNDTVGEVFAGVPSIDTQSVTTQVLVDNGETVVLGGVYERASG 643

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +    +P    +P +G LFRN     E++E+ +  TP ++
Sbjct: 644 EQTRRVPFFGSLPGVGWLFRNRLTFDEQSELLVFVTPRIL 683


>gi|78049053|ref|YP_365228.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037483|emb|CAJ25228.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 649

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 3/108 (2%)

Query: 316 LHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L  TPT+ +  R+ L +   + EV+  +I    G +P    R+ +T V +  G T+V+ G
Sbjct: 536 LKVTPTITNDNRVFLNMNVKKDEVARFIILEGYGTVPEINRREVNTAVLVGDGETVVIGG 595

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 596 VYEFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 643


>gi|53722566|ref|YP_111551.1| Type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|52212980|emb|CAH39018.1| Type III secretion system protein [Burkholderia pseudomallei
           K96243]
          Length = 620

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 363 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 411

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 412 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 469

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 470 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 529

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 530 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 583


>gi|307260659|ref|ZP_07542351.1| hypothetical protein appser12_2340 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869736|gb|EFN01521.1| hypothetical protein appser12_2340 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 432

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 1/162 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   +  +A P L   + + AS   G +  Y   +      ++   +  + L  T
Sbjct: 254 LTALEQENNVEIIASPRLLTTNKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVT 313

Query: 320 PTVLSPGRIGLR-IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P + +  +I L  + T+ S    G     + +   ++ +T V    G TIVL G+ +   
Sbjct: 314 PHISNDKKILLDLVVTQNSPNSTGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLT 373

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + ++ +P+L  IP+L  LF +S     + E+ I  TP++VK
Sbjct: 374 AKGEDRVPILGSIPVLKKLFSHSSDKISKRELVIFVTPYIVK 415


>gi|294627095|ref|ZP_06705683.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598528|gb|EFF42677.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 649

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 3/108 (2%)

Query: 316 LHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L  TPT+ +  R+ L +   + EV+  +I    G +P    R+ +T V +  G T+V+ G
Sbjct: 536 LKVTPTITNDNRVFLNMNVKKDEVARFIILEGYGTVPEINRREVNTAVLVGDGETVVIGG 595

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 596 VYEFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 643


>gi|124514518|gb|EAY56031.1| putative type II secretion system protein D [Leptospirillum
           rubarum]
          Length = 610

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 128/311 (41%), Gaps = 41/311 (13%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           +E TLR+ I  + +  +  + TV + G V+ +  +QR +++         R+Q      +
Sbjct: 273 MEGTLRKMIPKATVSADSKAQTVSVKGTVQDVFQAQRYLDIV--------RDQL----RR 320

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V   ++IA E  +T K     +  + L    F  ++  + +G   +  A  GG     G
Sbjct: 321 EVFFRIDIA-EIDLTDKDAYG-INWNALAHGVFNSTLALTGAGAGNAGLASTGGVTTPYG 378

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295
             F    V+          ALE    +  + +P +  +SGQ  S  +        G++ +
Sbjct: 379 ASFGSAAVI---------QALETIGRVHIINQPYVGTVSGQPVSLNATTDIPYLQGEYPF 429

Query: 296 KTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLR-------IQTEVSEPVIGVNA 345
                S+   ++    Y   G+ L  TPT L   ++ +        +Q  V+  + G+  
Sbjct: 430 FAGGLSSATETIPQIGYVPVGINLEVTPT-LEGDQVHMHGTVVVNSLQQFVTIDIKGIGT 488

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P    R   T +    G T+V+ GL+ +   +    +P L +IP+L  LF    + +
Sbjct: 489 FQNPEVNSRSQTTEITARDGQTVVIGGLMANTKNKTFWSVPFLGQIPVLKWLFSGYSYKK 548

Query: 406 EETEIFIAATP 416
           + TE+ +  TP
Sbjct: 549 QVTELVVIITP 559


>gi|67639552|ref|ZP_00438400.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei GB8 horse 4]
 gi|238520110|gb|EEP83573.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei GB8 horse 4]
          Length = 380

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 219 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 275

Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P V+  G     ++ +RI   E+S+  +     ++P     + +T   +  G  +++AG
Sbjct: 276 LPMVVDEGGCTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 331

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 332 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 380


>gi|10955572|ref|NP_052413.1| secretin YscC [Yersinia enterocolitica]
 gi|332163594|ref|YP_004424936.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|267564|sp|Q01244|YSCC_YEREN RecName: Full=Yop proteins translocation protein C; Flags:
           Precursor
 gi|155552|gb|AAC37020.1| yscC [Yersinia enterocolitica]
 gi|4324359|gb|AAD16836.1| secretin YscC [Yersinia enterocolitica W22703]
 gi|318608189|emb|CBY78163.1| type III secretion outermembrane pore forming protein
           (YscC,MxiD,HrcC, InvG) [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667824|gb|ADZ44467.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 607

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 13/227 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           ++ + ++I ++  D L ++G    + G  +G +        G   +   + ++  ++D  
Sbjct: 281 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDQSNIASNGALGSLVDAR 339

Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
             + +L   + LE   + + ++ PTL       A       +  K            T  
Sbjct: 340 GLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSETYYVKVTGKEVAELKGIT-- 397

Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           YG +L  TP VL+ G      + L I+    +P      G +P+      DT   +  G 
Sbjct: 398 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEG-IPTISRTVVDTVARVGHGQ 456

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412
           ++++ G+ +D++      +PLL  IP +GALF R S   R    +FI
Sbjct: 457 SLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELTRRTVRLFI 503


>gi|399792|sp|P31700|GSPD1_ERWCH RecName: Full=General secretion pathway protein D; AltName:
           Full=Pectic enzymes secretion protein outD; Flags:
           Precursor
 gi|148434|gb|AAA24831.1| secretory component [Erwinia chrysanthemi]
          Length = 712

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 14/183 (7%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------S 306
           R ++  +L AL        LA P++  +    A+F  G +    T S +T  +      +
Sbjct: 474 RGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQTTVGSGDNIFNT 533

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELP 363
           V     G+ L   P +     + L+I+ EVS    G  + +     ++  R  +  V + 
Sbjct: 534 VERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNGSSNSSLGVTFNTRTVNNAVMVT 593

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +  T+V+ GLL     +    +PLL  IP LG+LFR+      +  + +      ++P  
Sbjct: 594 NRETVVVGGLLDKTAIETNNKVPLLGDIPWLGSLFRSKTQTMSKRNLML-----FLRPTI 648

Query: 424 MRD 426
           +RD
Sbjct: 649 IRD 651


>gi|294651771|ref|ZP_06729069.1| type IV pilus assembly protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822328|gb|EFF81233.1| type IV pilus assembly protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 725

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 9/181 (4%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           L  F  +  L A++       ++ P +     Q A   SG +  Y   SSSTGA +    
Sbjct: 548 LSDFMLDLELSAVQADGYGEVISTPKVMTADKQPAKIESGTKIPY---SSSTGAGANAVP 604

Query: 311 -----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                D  + L  TP++   G++ +++      P      G + +      DT V + +G
Sbjct: 605 KTEFIDATLSLDVTPSITPDGKVMMKLNITKDAPSNPTPTGQL-TISKNSIDTNVLVDNG 663

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T+VL G+ + +    +  +P L  +P +G LFR       + E+ I  TP +V     R
Sbjct: 664 ETVVLGGIFEQENISSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTR 723

Query: 426 D 426
           +
Sbjct: 724 N 724


>gi|213865044|ref|ZP_03387163.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 501

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 286 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 344

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 345 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 401

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP+L K+P++G+LFR S  N+           F+++P  
Sbjct: 402 HGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 456

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 457 IVDPLTPDASESVNN 471


>gi|213425700|ref|ZP_03358450.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 505

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 290 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 348

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 349 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 405

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP+L K+P++G+LFR S  N+           F+++P  
Sbjct: 406 HGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 460

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 461 IVDPLTPDASESVNN 475


>gi|45751679|emb|CAF21323.1| InvG protein [Burkholderia mallei]
          Length = 278

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 52  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 100

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 101 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 158

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 159 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 218

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 219 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 272


>gi|254264759|ref|ZP_04955624.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
 gi|254215761|gb|EET05146.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
          Length = 620

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 363 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 411

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 412 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 469

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 470 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 529

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 530 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 583


>gi|259982|gb|AAB24178.1| OutD=pectic enzyme secretion protein [Erwinia chrysanthemi,
           Peptide, 712 aa]
          Length = 712

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 14/183 (7%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------S 306
           R ++  +L AL        LA P++  +    A+F  G +    T S +T  +      +
Sbjct: 474 RGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQTTVGSGDNIFNT 533

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELP 363
           V     G+ L   P +     + L+I+ EVS    G  + +     ++  R  +  V + 
Sbjct: 534 VERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNGSSNSSLGVTFNTRTVNNAVMVT 593

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +  T+V+ GLL     +    +PLL  IP LG+LFR+      +  + +      ++P  
Sbjct: 594 NRETVVVGGLLDKTAIETNNKVPLLGDIPWLGSLFRSKTQTMSKRNLML-----FLRPTI 648

Query: 424 MRD 426
           +RD
Sbjct: 649 IRD 651


>gi|224584676|ref|YP_002638474.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469203|gb|ACN47033.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 532

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 317 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 375

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 376 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 432

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 433 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 487

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 488 IVDPLTPDASESVNN 502


>gi|149197164|ref|ZP_01874216.1| secretion protein XqhA [Lentisphaera araneosa HTCC2155]
 gi|149139710|gb|EDM28111.1| secretion protein XqhA [Lentisphaera araneosa HTCC2155]
          Length = 738

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 37/281 (13%)

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           T    S RNQ    +  K  +++        A   QV ++VT  EV      + GF+++ 
Sbjct: 435 TIFEDSRRNQLVIRTKPKTYSMVKAILRHLDAPAMQVMIQVTAVEVELGEGLEFGFEYAA 494

Query: 220 T--------------GSSSGPSKSFAADFGGKFVSEGGDFSVK--GVLDRFSFETVLHAL 263
           T              GSS+  + SF    G   +  G    ++  GV + F+F   + A+
Sbjct: 495 TDKFGSGDNESGVGVGSSTADTPSFGPPGG---LDPGISLLLQSAGVDNEFAF---VQAV 548

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----VTTHDYGVVLHFT 319
              ++   L  P +  ++G+ A    G     +  ++ST + +    +     GV+L   
Sbjct: 549 AGDSSSELLFTPHILTLNGEEAEINIGQNVPVRAGTTSTSSNNDFEQIEYRSTGVLLRVL 608

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P V +   + L  +  +S  V         D PS+   K  T + + +  TI+L G+++ 
Sbjct: 609 PQVSADKYVTLDTEIVISSIVEQSPEEVLIDSPSFNENKVTTKLLIKNNETILLGGIIQK 668

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETE--IFIAAT 415
              +   G+P L  IP +G LF+++     E E  IFI AT
Sbjct: 669 VASESTSGVPFLKDIPGIGFLFQSATTGSREKELVIFIKAT 709


>gi|312602771|ref|YP_004022616.1| type III secretion outer membrane pore SctC [Burkholderia
           rhizoxinica HKI 454]
 gi|306431574|emb|CBK52126.1| type III secretion outer membrane pore SctC [Burkholderia
           rhizoxinica HKI 454]
 gi|312170085|emb|CBW77097.1| type III secretion outer membrane pore SctC [Burkholderia
           rhizoxinica HKI 454]
          Length = 645

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 97/250 (38%), Gaps = 29/250 (11%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGD--- 244
           V ++  I EV  D LKQIG             TG+      S+       F S   D   
Sbjct: 399 VEIEAHIIEVDDDALKQIGVDWRAHNSHVDLQTGNGLHSPSSYDGTLNPTFTSNSSDGTT 458

Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                       +V G   R+    V  AL+ A   R  A P +  +S   A      + 
Sbjct: 459 VISTAPLGASLTAVLGNAGRYLLARV-DALQSANLARIDASPKVATLSNAEAVMDHKTRF 517

Query: 294 LYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGD-MPS 350
             +    +S    SV+T   GV L   P V+   GR  ++++  + +  +     D +P 
Sbjct: 518 FVRVAGYTSADLYSVST---GVSLRVRPLVVEEDGRTRIKLEVHIEDGQVTNQLVDHIPV 574

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
                 +T   +    ++++AG   D    L+ GIPLLSKIP++G LFR     R   E 
Sbjct: 575 ITTSTINTEAFVGQNESLLIAGYRTDSSSNLETGIPLLSKIPLIGGLFRYRSDQRSHMER 634

Query: 411 FIAATPFLVK 420
               +P +++
Sbjct: 635 IFLLSPRIIE 644


>gi|194445131|ref|YP_002042139.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194470942|ref|ZP_03076926.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197248412|ref|YP_002147795.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|198243599|ref|YP_002216867.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205356993|ref|ZP_02344010.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205358415|ref|ZP_02656026.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194403794|gb|ACF64016.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194457306|gb|EDX46145.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197212115|gb|ACH49512.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197938115|gb|ACH75448.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205324767|gb|EDZ12606.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205334513|gb|EDZ21277.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|321223445|gb|EFX48511.1| Protein InvG precursor [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 514

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 299 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 357

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 358 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 414

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 415 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 469

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 470 IVDPLTPDASESVNN 484


>gi|205359783|ref|ZP_02832405.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205342787|gb|EDZ29551.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 556

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 341 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 399

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 400 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 456

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 457 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 511

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 512 IVDPLTPDASESVNN 526


>gi|16761675|ref|NP_457292.1| virulence associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143159|ref|NP_806501.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213052440|ref|ZP_03345318.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213612699|ref|ZP_03370525.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|25512784|pir||AF0852 secretory protein (associated with virulence) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503976|emb|CAD06005.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138792|gb|AAO70361.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 562

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP+L K+P++G+LFR S  N+           F+++P  
Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 518 IVDPLTPDASESVNN 532


>gi|254522174|ref|ZP_05134229.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14]
 gi|219719765|gb|EED38290.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14]
          Length = 638

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 7/174 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-TGATSVTTHDY 312
           +  +  L A++       ++ P +   + + A    G +  Y T+S   TG  +     +
Sbjct: 460 YLLDVELSAMQEEARGEVISNPRVVTTNQREALIKQGKEIGYVTISGGGTGGVATPNVQF 519

Query: 313 GVV---LHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
             V   L  TPT+ +  R+ L +Q    EV   +     G +P    R+ +T V +  G 
Sbjct: 520 KEVVLELKVTPTITNDNRVFLNMQLKKDEVERLIQLQGYGTVPEINRREVNTAVLVDDGQ 579

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           T+V+ G+ +   +     +P L  +P LG LF+    ++++ E+ +  TP +++
Sbjct: 580 TVVIGGVYEFTDRSSVSKVPFLGDVPFLGNLFKKRGRSKDKAELLVFVTPKVLR 633


>gi|197263182|ref|ZP_03163256.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205360510|ref|ZP_02683952.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|197241437|gb|EDY24057.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205349182|gb|EDZ35813.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 514

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 299 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 357

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 358 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 414

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 415 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 469

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 470 IVDPLTPDASESVNN 484


>gi|126457615|ref|YP_001076120.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1106a]
 gi|226195991|ref|ZP_03791577.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|242310941|ref|ZP_04809958.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
 gi|254186863|ref|ZP_04893379.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|126231383|gb|ABN94796.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106a]
 gi|157934547|gb|EDO90217.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|225931884|gb|EEH27885.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|242134180|gb|EES20583.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
          Length = 625

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 368 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 416

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 417 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 474

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 475 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 534

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 535 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 588


>gi|195873613|ref|ZP_02697884.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195633590|gb|EDX52004.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 514

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 299 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 357

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 358 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 414

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 415 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 469

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 470 IVDPLTPDASESVNN 484


>gi|194736395|ref|YP_002115850.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197300771|ref|ZP_02660996.2| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194711897|gb|ACF91118.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290685|gb|EDY30039.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 514

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 299 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 357

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 358 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 414

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 415 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 469

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 470 IVDPLTPDASESVNN 484


>gi|254301448|ref|ZP_04968892.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|157811001|gb|EDO88171.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
          Length = 625

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 368 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 416

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 417 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 474

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 475 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 534

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 535 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 588


>gi|217425200|ref|ZP_03456695.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
 gi|217391805|gb|EEC31832.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
          Length = 624

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 367 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 415

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 416 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 473

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 474 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 533

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 534 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 587


>gi|200387736|ref|ZP_03214348.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204928222|ref|ZP_03219422.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|199604834|gb|EDZ03379.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204322544|gb|EDZ07741.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 514

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 299 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 357

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 358 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 414

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 415 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 469

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 470 IVDPLTPDASESVNN 484


>gi|53716325|ref|YP_106133.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
           23344]
 gi|52422295|gb|AAU45865.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
           23344]
          Length = 606

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 349 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 397

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 398 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 455

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 456 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 515

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 516 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 569


>gi|83747847|ref|ZP_00944880.1| HrcC [Ralstonia solanacearum UW551]
 gi|207739230|ref|YP_002257623.1| hrp protein hrcc [Ralstonia solanacearum IPO1609]
 gi|83725494|gb|EAP72639.1| HrcC [Ralstonia solanacearum UW551]
 gi|206592603|emb|CAQ59509.1| hrp conserved protein hrcc [Ralstonia solanacearum IPO1609]
          Length = 567

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + AL++    R  A P +  +    A   +  Q+ Y  V+    A  +     GV L   
Sbjct: 406 ISALQQTNQARVTASPKVATLDNTEAVMDNR-QNFYVPVAGYQSA-DLYAISAGVSLRVL 463

Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P V+  G   RI + +  E  + +     G++P     + DT   +  G ++++AG   D
Sbjct: 464 PMVVMDGGTVRIRMNVHIEDGQ-ITSQQVGNLPVTSQSEIDTQALINEGESLLIAGYSVD 522

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              +  + IP LSKIP++GALFR  +   +  +     TP ++ P
Sbjct: 523 QQAKTVDAIPGLSKIPLVGALFRTDQTTGQRFQRMFLVTPRVITP 567


>gi|253689235|ref|YP_003018425.1| general secretion pathway protein D [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755813|gb|ACT13889.1| general secretion pathway protein D [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 640

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 38/210 (18%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  ++ AL   +    LA P++  +    A+F             T+ G ++++TV   
Sbjct: 402 NWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERK 461

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKA 356
           T          G+ L   P +     + L I+ EVS           N G   ++  R  
Sbjct: 462 T---------VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLG--ATFNTRTV 510

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +  V + SG T+V+ GLL     +    +PLL  IP+LG LFR++    ++  + +    
Sbjct: 511 NNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSQETKKRNLML---- 566

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
             ++P  +RD S     Y     +K   FN
Sbjct: 567 -FIRPSIIRDRS----QYQSASASKYHSFN 591


>gi|205357926|ref|ZP_02574228.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205328766|gb|EDZ15530.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
          Length = 556

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 341 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 399

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 400 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 456

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 457 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 511

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 512 IVDPLTPDASESVNN 526


>gi|167743212|ref|ZP_02415986.1| Type III secretion system protein [Burkholderia pseudomallei 14]
          Length = 309

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 52  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 100

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 101 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 158

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 159 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 218

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 219 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 272


>gi|67639412|ref|ZP_00438272.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei GB8 horse 4]
 gi|124382842|ref|YP_001025856.1| type III secretion system protein BsaO [Burkholderia mallei NCTC
           10229]
 gi|126445673|ref|YP_001077941.1| type III secretion system protein BsaO [Burkholderia mallei NCTC
           10247]
 gi|254175971|ref|ZP_04882629.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
           10399]
 gi|254359082|ref|ZP_04975354.1| type III secretion system protein BsaO [Burkholderia mallei
           2002721280]
 gi|126238527|gb|ABO01639.1| type III secretion system protein BsaO [Burkholderia mallei NCTC
           10247]
 gi|148028269|gb|EDK86229.1| type III secretion system protein BsaO [Burkholderia mallei
           2002721280]
 gi|160697013|gb|EDP86983.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
           10399]
 gi|238519949|gb|EEP83414.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei GB8 horse 4]
          Length = 625

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 368 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 416

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 417 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 474

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 475 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 534

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 535 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 588


>gi|161615810|ref|YP_001589775.1| hypothetical protein SPAB_03601 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161365174|gb|ABX68942.1| hypothetical protein SPAB_03601 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 553

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 338 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 396

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 397 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 453

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 454 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 508

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 509 IVDPLTPDASESVNN 523


>gi|83720458|ref|YP_443762.1| phage-related secreted protein [Burkholderia thailandensis E264]
 gi|83654283|gb|ABC38346.1| probable phage-related secreted protein YPO2280 [Burkholderia
           thailandensis E264]
          Length = 460

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 16/188 (8%)

Query: 214 GFQHSITGS-SSGPSKSFAAD-FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATA 268
           G+ + +T + S+  + S AA   GG+     GD S      RF+    +  + AL   + 
Sbjct: 251 GWAYEVTNTDSTNSAWSIAAKVLGGQLRISSGDTSSDKSAVRFTGPGIDAAISALNADSR 310

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVL 323
            + ++ P +   SG+      G Q   ++      SS T   S+T  D G++    PTV+
Sbjct: 311 FKVISSPHVRIASGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVM 370

Query: 324 SPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
               I LR+  E+S+ V    GV+    P+   R+  T   L  G  +VL GL++D    
Sbjct: 371 RDA-IELRVHEEISDFVPTKTGVDTS--PTKNTRQLQTVTRLTDGEVVVLGGLIQDRNST 427

Query: 381 LKEGIPLL 388
            + G   L
Sbjct: 428 ARSGYAWL 435


>gi|322614284|gb|EFY11215.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621652|gb|EFY18505.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624513|gb|EFY21346.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628844|gb|EFY25627.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633429|gb|EFY30171.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635995|gb|EFY32703.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639703|gb|EFY36388.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322650654|gb|EFY47059.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654733|gb|EFY51052.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658954|gb|EFY55207.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664479|gb|EFY60673.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668272|gb|EFY64429.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673748|gb|EFY69849.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677809|gb|EFY73872.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681361|gb|EFY77393.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322683763|gb|EFY79773.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323193848|gb|EFZ79051.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200318|gb|EFZ85400.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323205574|gb|EFZ90539.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210085|gb|EFZ94988.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216388|gb|EGA01115.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221135|gb|EGA05566.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226957|gb|EGA11139.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230759|gb|EGA14877.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234890|gb|EGA18976.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238929|gb|EGA22979.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241629|gb|EGA25660.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248224|gb|EGA32160.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251192|gb|EGA35065.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256076|gb|EGA39814.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263211|gb|EGA46749.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264286|gb|EGA47792.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271112|gb|EGA54540.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 562

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 518 IVDPLTPDASESVNN 532


>gi|194448425|ref|YP_002046858.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205359156|ref|ZP_02667567.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194406729|gb|ACF66948.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205338023|gb|EDZ24787.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
          Length = 556

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 341 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 399

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 400 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 456

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 457 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 511

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 512 IVDPLTPDASESVNN 526


>gi|237508896|ref|ZP_04521611.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
 gi|254185160|ref|ZP_04891749.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
 gi|184215752|gb|EDU12733.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
 gi|235001101|gb|EEP50525.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
          Length = 625

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 368 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 416

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 417 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 474

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 475 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 534

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 535 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 588


>gi|205353841|ref|YP_002227642.1| virulence associated secretory protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273622|emb|CAR38609.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628950|gb|EGE35293.1| Protein invG [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 562

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 518 IVDPLTPDASESVNN 532


>gi|196233728|ref|ZP_03132568.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
 gi|196222242|gb|EDY16772.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
          Length = 621

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDM---PSYRVRKADTTVELPS 364
           ++G  L  TP++     I + +Q E+S  V       +G     P    R  D+ V + S
Sbjct: 430 EFGNTLIVTPSINKDDFISMSVQPEISNKVADATFTFSGATVTSPVIDKRTLDSNVVIKS 489

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T+ + GLL+D++ + +  +P++  IPILG  F+     R +  + I  TP ++K
Sbjct: 490 GDTLAIGGLLQDEVTKGRTKVPVIGDIPILGYAFQERLNVRTKRNLLIFVTPTIIK 545


>gi|56414850|ref|YP_151925.1| virulence secretory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363778|ref|YP_002143415.1| virulence secretory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129107|gb|AAV78613.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095255|emb|CAR60806.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 562

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 518 IVDPLTPDASESVNN 532


>gi|126442335|ref|YP_001063169.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 668]
 gi|126221826|gb|ABN85331.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 668]
          Length = 617

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 360 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 408

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 409 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 466

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 467 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 526

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 527 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 580


>gi|238909665|ref|ZP_04653502.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 562

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 518 IVDPLTPDASESVNN 532


>gi|62181400|ref|YP_217817.1| invasion protein; outer membrane [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62129033|gb|AAX66736.1| invasion protein; outer membrane [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322715884|gb|EFZ07455.1| invasion protein; outer membrane [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 562

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 518 IVDPLTPDASESVNN 532


>gi|320087303|emb|CBY97068.1| Protein invG Flags: Precursor [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 562

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 518 IVDPLTPDASESVNN 532


>gi|134282090|ref|ZP_01768796.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
 gi|134246619|gb|EBA46707.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
          Length = 625

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 368 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 416

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 417 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 474

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 475 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 534

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 535 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 588


>gi|153003602|ref|YP_001377927.1| general secretion pathway protein D [Anaeromyxobacter sp. Fw109-5]
 gi|152027175|gb|ABS24943.1| general secretion pathway protein D [Anaeromyxobacter sp. Fw109-5]
          Length = 892

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 1/105 (0%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L   P +   G I L I+ E +E ++  +    P+   R A T +      TIV+ GL++
Sbjct: 640 LKIKPQINEGGNIRLTIE-EQTEEIVDRDPQLGPTTAKRTAKTQIVAKDQSTIVIGGLIQ 698

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +   +    IP+L  +PILG LFR+S   ++ T + +  TP++++
Sbjct: 699 ERNVRSVRKIPVLGSLPILGWLFRDSTNTKQRTNLLLFLTPYIIR 743


>gi|474942|emb|CAA53049.1| invG [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 562

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 518 IVDPLTPDASESVNN 532


>gi|171911301|ref|ZP_02926771.1| type II and III secretion system protein [Verrucomicrobium spinosum
           DSM 4136]
          Length = 173

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%)

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           N  + P +  RK  T V +  G T+ + GL+++D+Q +++ +P+L  +P LG LF++   
Sbjct: 57  NKIEQPVFSTRKVTTAVTVWDGQTVAMGGLIREDVQDVEDKVPILGDLPFLGRLFQSKAE 116

Query: 404 NREETEIFIAATPFLVKP 421
           +  +  + I  T  L+ P
Sbjct: 117 DHFKRNLMILVTAKLIDP 134


>gi|126207688|ref|YP_001052913.1| type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae L20]
 gi|165975656|ref|YP_001651249.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|190149472|ref|YP_001967997.1| type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307258421|ref|ZP_07540162.1| hypothetical protein appser11_2240 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|126096480|gb|ABN73308.1| type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875757|gb|ABY68805.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|189914603|gb|ACE60855.1| type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306867605|gb|EFM99452.1| hypothetical protein appser11_2240 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 432

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 1/162 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   +  +A P L   + + AS   G +  Y   +      ++   +  + L  T
Sbjct: 254 LTALEQENNVEIIASPRLLTTNKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVT 313

Query: 320 PTVLSPGRIGLR-IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P + +  +I L  + T+ S    G     + +   ++ +T V    G TIVL G+ +   
Sbjct: 314 PHISNDKQILLDLVVTQNSPNSTGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLT 373

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + ++ +P+L  IP+L  LF +S     + E+ I  TP++VK
Sbjct: 374 AKGEDRVPILGSIPVLKKLFSHSSDKISKRELVIFVTPYIVK 415


>gi|254293816|ref|YP_003059839.1| general secretion pathway protein D [Hirschia baltica ATCC 49814]
 gi|254042347|gb|ACT59142.1| general secretion pathway protein D [Hirschia baltica ATCC 49814]
          Length = 660

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 13/177 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309
           F  +++A++       L+ P L  +  + AS T G Q +  T   + G        +V  
Sbjct: 447 FGAIINAVDSDITSNVLSTPHLLTMDNEKASITVG-QEVPITTGEALGTNNSNPFRTVER 505

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              GV L   P +     I L ++ EVS     ++  D  +   R+ +TT+    G  +V
Sbjct: 506 KPLGVTLEVEPQIGEGDSIKLNLRQEVSSIFDSIDGTDFITNN-REINTTILADDGEIVV 564

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL++++       +PLL  IP +G LF +    ++ T + +      +KP  +RD
Sbjct: 565 LGGLIQEEETLNISKVPLLGDIPGVGRLFSSEGTTKKRTNLMV-----FLKPTIVRD 616


>gi|148652211|ref|YP_001279304.1| type IV pilus secretin PilQ [Psychrobacter sp. PRwf-1]
 gi|148571295|gb|ABQ93354.1| type IV pilus secretin PilQ [Psychrobacter sp. PRwf-1]
          Length = 642

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 5/162 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A++       ++ P +  +  Q+A+ +SG +  Y++  S  G T+    +  + L  T
Sbjct: 483 LSAMQAEGRGEVISTPKILTLDKQTATVSSGTKIPYQS-ESEGGGTTTQFEEALLSLQVT 541

Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P++    +I L++  E   P  +G     + + R+    T V +  G T+VL G+ ++ I
Sbjct: 542 PSITPEDKISLQLNIENGRPNPVGNGVILIDTDRLI---TRVTVGDGQTLVLGGIYRNQI 598

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               + +P    +P +G LF+      ++ E+ I  TP L++
Sbjct: 599 FNNTQKVPFFGDLPYIGRLFKQDLRRNDQQELLIFVTPKLMQ 640


>gi|16766204|ref|NP_461819.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|207858160|ref|YP_002244811.1| secretory protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|20141547|sp|P35672|INVG_SALTY RecName: Full=Protein invG; Flags: Precursor
 gi|16421446|gb|AAL21778.1| outer membrane invasion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|206709963|emb|CAR34317.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261248034|emb|CBG25867.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995026|gb|ACY89911.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159457|emb|CBW18975.1| type III secretion system secretory apparatus [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312913916|dbj|BAJ37890.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|323131250|gb|ADX18680.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326624629|gb|EGE30974.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332989770|gb|AEF08753.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 562

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 518 IVDPLTPDASESVNN 532


>gi|53728904|ref|ZP_00134621.2| COG4796: Type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|303250734|ref|ZP_07336930.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|303252023|ref|ZP_07338194.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302649453|gb|EFL79638.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302650404|gb|EFL80564.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 417

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 1/162 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   +  +A P L   + + AS   G +  Y   +      ++   +  + L  T
Sbjct: 239 LTALEQENNVEIIASPRLLTTNKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVT 298

Query: 320 PTVLSPGRIGLR-IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P + +  +I L  + T+ S    G     + +   ++ +T V    G TIVL G+ +   
Sbjct: 299 PHISNDKQILLDLVVTQNSPNSTGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLT 358

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + ++ +P+L  IP+L  LF +S     + E+ I  TP++VK
Sbjct: 359 AKGEDRVPILGSIPVLKKLFSHSSDKISKRELVIFVTPYIVK 400


>gi|307247187|ref|ZP_07529238.1| hypothetical protein appser2_1870 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307249414|ref|ZP_07531405.1| hypothetical protein appser4_2250 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307251732|ref|ZP_07533636.1| hypothetical protein appser6_2530 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253966|ref|ZP_07535818.1| hypothetical protein appser9_2240 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256227|ref|ZP_07538014.1| hypothetical protein appser10_2320 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307262791|ref|ZP_07544418.1| hypothetical protein appser13_2170 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306856325|gb|EFM88477.1| hypothetical protein appser2_1870 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306858556|gb|EFM90621.1| hypothetical protein appser4_2250 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306860818|gb|EFM92827.1| hypothetical protein appser6_2530 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863170|gb|EFM95112.1| hypothetical protein appser9_2240 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865408|gb|EFM97304.1| hypothetical protein appser10_2320 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306871936|gb|EFN03653.1| hypothetical protein appser13_2170 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 429

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 1/162 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   +  +A P L   + + AS   G +  Y   +      ++   +  + L  T
Sbjct: 251 LTALEQENNVEIIASPRLLTTNKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVT 310

Query: 320 PTVLSPGRIGLR-IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P + +  +I L  + T+ S    G     + +   ++ +T V    G TIVL G+ +   
Sbjct: 311 PHISNDKQILLDLVVTQNSPNSTGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLT 370

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + ++ +P+L  IP+L  LF +S     + E+ I  TP++VK
Sbjct: 371 AKGEDRVPILGSIPVLKKLFSHSSDKISKRELVIFVTPYIVK 412


>gi|116620720|ref|YP_822876.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223882|gb|ABJ82591.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 527

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 8/154 (5%)

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P LT+      SFT+G        ++ T   S T  D G+ L  TP V     + L I +
Sbjct: 367 PVLTSGYYGPQSFTNGA-------NAYTPPPSFTFEDLGLTLKITPAVHGTESVTLDIDS 419

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           E    + G +   +P    R   +  +L  G    +AGL+  D  +   GI  +S++P+L
Sbjct: 420 EFKV-LAGGSVNGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPVL 478

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           G L      N++E+++ I   P L+ P   + LS
Sbjct: 479 GQLTSTHTRNKDESQVLILMRPRLLTPPPGQALS 512


>gi|261820712|ref|YP_003258818.1| general secretion pathway protein D [Pectobacterium wasabiae
           WPP163]
 gi|261604725|gb|ACX87211.1| general secretion pathway protein D [Pectobacterium wasabiae
           WPP163]
          Length = 640

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 30/190 (15%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  ++ AL   +    LA P++  +    A+F             T+ G ++++TV   
Sbjct: 402 NWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERK 461

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADT 358
           T          G+ L   P +     + L I+ EVS      ++       ++  R  + 
Sbjct: 462 T---------VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSAELGATFNTRTVNN 512

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V + SG T+V+ GLL    ++    +PLL  IPILG LFR++     +  + +      
Sbjct: 513 AVLVSSGETVVVGGLLDKSTRESASKVPLLGDIPILGHLFRSNSQETSKRNLML-----F 567

Query: 419 VKPVAMRDLS 428
           ++P  +RD S
Sbjct: 568 IRPSIIRDRS 577


>gi|153212013|ref|ZP_01947830.1| VcsC2 [Vibrio cholerae 1587]
 gi|124116809|gb|EAY35629.1| VcsC2 [Vibrio cholerae 1587]
          Length = 461

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 83/212 (39%), Gaps = 6/212 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLD 252
           D+V L   IA +     +Q+ F   +   S+   + F  D      S G  D  V    +
Sbjct: 233 DEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGIYDLVVPPFTE 292

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F     AL      R + E  L  +  Q   F          +S+    T     D 
Sbjct: 293 TTDFLRNFQALTSNGIARGVYETNLLVLENQQGHFGKKQTATIALISNRQVETQKIEADN 352

Query: 313 GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              L+ T  +L  G +  RIQ     + +     N+   P    +  ++ V +  G TI+
Sbjct: 353 S--LYVTGRLLPSGDVQARIQYIEESLDDDKESDNSNRPPKVSSQSLNSEVYIKPGQTII 410

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           L G      QQ+K GIP+LS IP+LG LF+++
Sbjct: 411 LGGFDNTVTQQMKSGIPVLSSIPLLGELFKST 442


>gi|322646886|gb|EFY43389.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|323203179|gb|EFZ88208.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
          Length = 456

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 241 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 299

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 300 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 356

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+++P  
Sbjct: 357 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 411

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 412 IVDPLTPDASESVNN 426


>gi|46447109|ref|YP_008474.1| putative component D of type II secretion pathway [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400750|emb|CAF24199.1| putative component D of type II secretion pathway [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 953

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 25/207 (12%)

Query: 230 FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           + A   G+ ++ GG  FS  G L        + A+   T I  +  P +      +A   
Sbjct: 702 YTAGIIGRHLTHGGLHFSTIGAL--------VKAIHSDTKINIIMNPKIVTEDNNTAEVF 753

Query: 289 SGGQHLYKTVSSSTGATSVTTH-----DYGVVLHFTPTVLSPGRIGLRIQTEVSE----- 338
            G    YKT S +    SV T+     D G  L  TP + + G I L I  EV+      
Sbjct: 754 VGSTDRYKTQSIANDIGSVITNNFQFIDVGTTLRVTPLIGNNGIITLDIIQEVTNDGGNA 813

Query: 339 -PVIG-----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            P +G     V+   +P     +  T V +P G  ++L+G+++    +    IP L  +P
Sbjct: 814 NPNVGNNPSVVDVNLVPVLSKSRTVTKVHVPDGFFVILSGMIQSTESRSVNRIPCLGGLP 873

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
           ++G + +       +  + I   P +V
Sbjct: 874 LIGGISKQKSNRDSKRNLMIFIRPLIV 900


>gi|299140102|ref|ZP_07033271.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298597948|gb|EFI54117.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 654

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 22/180 (12%)

Query: 276 TLTAISGQSASFTS-------GGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTVL 323
           T T  SG S S  S       GG +L   +    G ++VT       D G+ +  TP +L
Sbjct: 480 TSTYSSGGSNSLPSSLAGVNVGGTNLNTLLQQYLGTSTVTIPQIQYEDLGITVKTTPRIL 539

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             G + L ++ ++     G N G +P    R   +T+ +P+G   +LA  +  D  +   
Sbjct: 540 RSGDVRLTLELKIEALGTGSNDG-IPILTNRSLTSTITVPAGKEALLASEISRDESRSMS 598

Query: 384 GIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           GIP L++IP     F+ +  ++E    E+ I  TP +V+   MR  S+     +VE  AK
Sbjct: 599 GIPGLNEIPG----FQGTNEDKEVDTDELLITITPHIVRAGDMRIASK---RLAVEHTAK 651


>gi|313497412|gb|ADR58778.1| General secretion pathway protein D [Pseudomonas putida BIRD-1]
          Length = 584

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ   F +G      T +++    ++   + GV L   P +     + L I  EVS    
Sbjct: 402 GQEVPFVTGS----VTQNNANPYQTIERKEVGVKLRIKPQINVDNSVRLDIVQEVSSIAD 457

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN- 400
             +A D+ + + R+  T V +   G ++L GL+ D++    + +PLL  IP LG LFR+ 
Sbjct: 458 TSSASDVITNK-REIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYLGRLFRSD 516

Query: 401 -SRFNREETEIFIAATPFLVKPVAMRD 426
            +R  ++   +FI       +P  +RD
Sbjct: 517 ATRNTKQNLMVFI-------RPRILRD 536


>gi|289804655|ref|ZP_06535284.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 465

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 250 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 308

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 309 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 365

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP+L K+P++G+LFR S  N+           F+++P  
Sbjct: 366 HGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN-----VVRVFMIEPKE 420

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 421 IVDPLTPDASESVNN 435


>gi|116053188|ref|YP_793509.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588409|gb|ABJ14424.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 710

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 3/210 (1%)

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
           FQ   T  +   S +   D G K  S G    +  + D    +  L A+E+      +++
Sbjct: 500 FQGQCTFPTRDNSPTPFVDMGAKDASSG--IGIGFITDNIILDLQLSAMEKTGNGEVVSQ 557

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +     ++A    G +  Y+  SSS  ATS +  +  + L  TP +    RI + ++ 
Sbjct: 558 PKVVTSDKETAKILKGSEIPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKV 616

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
               P        +P     + +  + +  G TIV+ G+  +   +  + +P L  +P L
Sbjct: 617 TKDAPDFQNALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQTKAVDKVPFLGDLPYL 676

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G LFR    +  + E+ +  TP ++   A+
Sbjct: 677 GRLFRRDTVSDTKNELLVFLTPRIMNNQAI 706


>gi|167574392|ref|ZP_02367266.1| type III secretion system EscC protein [Burkholderia oklahomensis
           C6786]
          Length = 487

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 21/232 (9%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V + V I ++  + L  +G   S +    G S SF  + GG+   + G FS   + +  S
Sbjct: 264 VEISVAIIDINAEDLGALGVDWSASARIGGGSVSF--NSGGQ--PDAGSFSTV-IANTGS 318

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYG 313
           F   L AL++ +  R L+ P++  +    A         Y  VS+   A   S++T   G
Sbjct: 319 FMVQLSALQQNSKARILSRPSIVTLDNMQAVLDRN-ITFYTKVSAERVAKLESIST---G 374

Query: 314 VVLHFTPTVL-SPGR----IGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
            +L  TP ++   GR    + L +Q    + P+       +P     +  T   L  G  
Sbjct: 375 SLLRVTPRIIGDAGRQEVMLTLVVQDGRQTSPL--SQQEPLPQTLSSEIATHSLLKEGEA 432

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET-EIF-IAATPF 417
           ++L G ++D++ + +  IPLL  IP LG LF+ +R ++  T  +F I A P+
Sbjct: 433 LLLGGFVQDELSEGERKIPLLGDIPFLGRLFKTTRQSQRHTVRLFLIKADPW 484


>gi|121999148|ref|YP_001003935.1| general secretion pathway protein D [Halorhodospira halophila SL1]
 gi|121590553|gb|ABM63133.1| general secretion pathway protein D [Halorhodospira halophila SL1]
          Length = 670

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 119/304 (39%), Gaps = 38/304 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V+N L++    QV ++  IAEV  +  +++G Q    G       +F A  GG   + 
Sbjct: 340 RGVVNRLDVR-RAQVLVEAIIAEVSAERSQELGIQWGALGDQGVGLVNFDAAGGGSVTNI 398

Query: 242 G----------GDFSV-----KGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSA 285
           G          G+ S+      G   R      +L AL   +    L+ P++  +  + A
Sbjct: 399 GRAAAGGTDALGNLSLGSGLTAGAATRGGELGVLLRALSSESDSNILSTPSVMTMDNEEA 458

Query: 286 SFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
               G Q++        G T    S+   D GV L   P +     + L I+ EVS+   
Sbjct: 459 EIVVG-QNVPFVTGREVGDTRDFQSIQREDVGVQLRIRPQINEGDSLKLDIEKEVSDVQE 517

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
              A D+ +  +R   T+  +  G  +VL GL+ +  +   + +P L  IP LG LFR  
Sbjct: 518 RGEAEDIVTS-MRSITTSAMVDDGEIMVLGGLMDEQAESQTDRVPGLGSIPGLGWLFRYE 576

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
               ++  + +   P +++                 DDA+     + N I   + AS   
Sbjct: 577 SSAAQKQNLMVFLRPRIIEN---------------RDDARELTSPKYNLIRNRQLASRAR 621

Query: 462 GQNY 465
           G  +
Sbjct: 622 GMRF 625


>gi|50122032|ref|YP_051199.1| general secretion pathway protein D [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612558|emb|CAG76008.1| general secretion pathway protein D [Pectobacterium atrosepticum
           SCRI1043]
          Length = 650

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 34/193 (17%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  ++ AL   +    LA P++  +    A+F             T+ G ++++TV   
Sbjct: 412 NWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERK 471

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKA 356
           T          G+ L   P +     + L I+ EVS           N G   ++  R  
Sbjct: 472 T---------VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLG--ATFNTRTV 520

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +  V + SG T+V+ GLL     +    +P L  IPILG LFR++    ++  + +    
Sbjct: 521 NNAVLVSSGETVVVGGLLDKSTNESASKVPFLGDIPILGHLFRSNSQETKKRNLML---- 576

Query: 417 FLVKPVAMRDLSR 429
             ++P  +RD S+
Sbjct: 577 -FIRPSIIRDRSQ 588


>gi|220915838|ref|YP_002491142.1| general secretion pathway protein D [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953692|gb|ACL64076.1| general secretion pathway protein D [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 902

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 95/242 (39%), Gaps = 42/242 (17%)

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           Q G  +S+  SS+     F   + G   +E  D     +    S   ++ AL+  + +  
Sbjct: 532 QTGRVNSLDMSSAIALGGFLTGYTGPISAELKDLGFGNIP---SLGLLIQALQSNSDVNV 588

Query: 272 LAEPTLTAIS--------GQSASFTSG-------------GQHLYKTVSSSTGA------ 304
           L+ P L A          GQ+  F SG             G     TV S+ G       
Sbjct: 589 LSTPHLLATDNEESEITVGQNVPFQSGYAPSGLSNLLSGSGTGASSTVGSALGTQGLGSL 648

Query: 305 -TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYRVRKADT 358
              +   +  + L   P +   G I L I+ +  E     P +G      P+   R   T
Sbjct: 649 YAPIQRQNVELKLKIKPQINEGGNIRLTIEEQTEEIAEKDPQLG------PTTAKRSVKT 702

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            +      TIV+ GL++D   +    IP L  +PILG LFR++   +++  + +  TP++
Sbjct: 703 QIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFRDTTTTKQKVNLLLFLTPYI 762

Query: 419 VK 420
           ++
Sbjct: 763 IR 764


>gi|167567127|ref|ZP_02360043.1| type III secretion system EscC protein [Burkholderia oklahomensis
           EO147]
          Length = 482

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 21/232 (9%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V + V I ++  + L  +G   S +    G S SF  + GG+   + G FS   + +  S
Sbjct: 259 VEISVAIIDINAEDLGALGVDWSASARIGGGSVSF--NSGGQ--PDAGSFSTV-IANTGS 313

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYG 313
           F   L AL++ +  R L+ P++  +    A         Y  VS+   A   S++T   G
Sbjct: 314 FMVQLSALQQNSKARILSRPSIVTLDNMQAVLDRN-ITFYTKVSAERVAKLESIST---G 369

Query: 314 VVLHFTPTVL-SPGR----IGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
            +L  TP ++   GR    + L +Q    + P+       +P     +  T   L  G  
Sbjct: 370 SLLRVTPRIIGDAGRQEVMLTLVVQDGRQTSPL--SQQEPLPQTLSSEIATHSLLKEGEA 427

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET-EIF-IAATPF 417
           ++L G ++D++ + +  IPLL  IP LG LF+ +R ++  T  +F I A P+
Sbjct: 428 LLLGGFVQDELSEGERKIPLLGDIPFLGRLFKTTRQSQRHTVRLFLIKADPW 479


>gi|308125791|ref|ZP_05777362.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus K5030]
 gi|308114494|gb|EFO52034.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus K5030]
          Length = 559

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GATSVT     + L  T
Sbjct: 397 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVT 455

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 456 PQITPDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHS 515

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 516 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 557


>gi|33864362|ref|NP_895922.1| general (type II) secretion pathway protein D precursor
           [Prochlorococcus marinus str. MIT 9313]
 gi|33641142|emb|CAE22272.1| possible general (type II) secretion pathway protein D precursor
           [Prochlorococcus marinus str. MIT 9313]
          Length = 774

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 336 VSEPV-IGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           V +P+  G   GD+ +   R+ +T  V +  G T++L G++ D   ++    P+L  IP+
Sbjct: 663 VGQPISTGGKCGDVRTVNSRRLETGAVRVRDGQTLILTGVISDSDTEVVTKWPILGDIPL 722

Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420
           +G  FR+S  +R++ E+ I  TP ++ 
Sbjct: 723 IGQFFRSSSGSRKKNELVIMVTPRIIN 749


>gi|156972409|ref|YP_001443316.1| type IV pilus secretin PilQ [Vibrio harveyi ATCC BAA-1116]
 gi|156524003|gb|ABU69089.1| hypothetical protein VIBHAR_00029 [Vibrio harveyi ATCC BAA-1116]
          Length = 583

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GATSVT     + L  T
Sbjct: 421 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVT 479

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 480 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 539

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 540 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 581


>gi|331006529|ref|ZP_08329826.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC1989]
 gi|330419665|gb|EGG94034.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC1989]
          Length = 678

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGF--QHSITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVL 251
           QV ++  I       +++ GF    S T +++ P+ + +A      F   G    V  V 
Sbjct: 446 QVMIEARIVSATDTFMEEFGFFVGASDTSTANNPNLTTSALSDATVFNPVGSVLDVSYVS 505

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-H 310
           +  S    + ALE +     +++P +     Q+A  +SG Q  +   +SS G T  T   
Sbjct: 506 NGVSLALEIQALEDSGYGEVVSQPRVLTGDKQTAKISSGQQIPF---TSSDGDTVTTIFQ 562

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           D  + L  TP +    RI + ++     +    + V+   +    V +  TT  +  G T
Sbjct: 563 DAVLSLEVTPQITPDNRIIMELKVNRDSLDTSTVTVSGSPI---NVTELTTTALVGDGDT 619

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           IVL G+ +         +P+L  IP+LG LF ++    + TE+ I  TP
Sbjct: 620 IVLGGIYEQTKTSSVSKVPVLGDIPVLGRLFTSNTDQDDRTELLIFITP 668


>gi|146280952|ref|YP_001171105.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri
           A1501]
 gi|145569157|gb|ABP78263.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri
           A1501]
          Length = 712

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 7/185 (3%)

Query: 238 FVSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           FV  G   S  G     V D    +  L A+E+      +++P +     ++A    G +
Sbjct: 515 FVDMGAVGSTSGIGLGFVTDNAILDLQLSAMEKTGNGEVVSQPKVVTADKETAKILKGSE 574

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSY 351
             Y+  SSS  ATS +  +  + L  TP +    RI + ++    EP     A   +P+ 
Sbjct: 575 VPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDEPDFSQAATTGVPAI 633

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           R  + +  V +  G TIV+ G+  +   +  + +P L  +P LG LFR       ++E+ 
Sbjct: 634 RKNEVNAKVLVTDGETIVIGGVFSNTQSKSVDKVPFLGDLPYLGRLFRRDLVQDRKSELL 693

Query: 412 IAATP 416
           +  TP
Sbjct: 694 VFITP 698


>gi|269961466|ref|ZP_06175830.1| Fimbrial assembly protein PilQ [Vibrio harveyi 1DA3]
 gi|269833843|gb|EEZ87938.1| Fimbrial assembly protein PilQ [Vibrio harveyi 1DA3]
          Length = 563

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GATSVT     + L  T
Sbjct: 401 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVT 459

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 460 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 519

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 520 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 561


>gi|260718933|ref|YP_003225074.1| type II secretion protein EtpD [Escherichia coli O103:H2 str.
           12009]
 gi|257762444|dbj|BAI33940.1| type II secretion protein EtpD [Escherichia coli O103:H2 str.
           12009]
          Length = 656

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 34/209 (16%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  +L AL  ++    LA P++  +    A+F             T+ G +++ TV   
Sbjct: 419 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 478

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358
           T          G+ L   P +     + L I+ EVS   +  +        ++  R    
Sbjct: 479 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 529

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + + +G T+V+ GLL   I+  +  +PLL  IP+LG LF +   +  +  + +   P +
Sbjct: 530 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFSSKSEHAAKRNLMLFIRPTI 589

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           ++    RD  R   H S E   K   FN+
Sbjct: 590 IRE---RDGFR---HASAE---KYLSFNQ 609


>gi|281358092|ref|ZP_06244576.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315465|gb|EFA99494.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 545

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 26/210 (12%)

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           IG    + G SS P+       GG +    G    K  LD  +F+ +L A +     + L
Sbjct: 193 IGATTEVPGQSSQPTTGM----GGNWKPIAG----KDTLD-IAFQWLLTAQD----AKVL 239

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIG 329
           + P +  IS    S    G+ +    ++STG T   S      GV L   P++++   + 
Sbjct: 240 SSPNIL-ISRNEVSRIVTGEEIPIQEANSTGNTLSLSTKFKSVGVTLEVEPSMINRDNVT 298

Query: 330 LRIQTEVSEPVI---GVNAGDMPSYRV-----RKADTTVELPSGGTIVLAGLLKDDIQQL 381
           LR+  +VS  VI    V+AG   SY V     R  +T + +     +++ GL   +    
Sbjct: 299 LRVYPKVSN-VIRYENVSAGGDTSYPVPVISARSVETYLRMQDKQVVMMGGLYSRNDSLS 357

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIF 411
           ++ +P+LS +P++G LF      +E T++ 
Sbjct: 358 QQRVPILSDLPLIGELFTGKNLTKEVTQLI 387


>gi|291285874|ref|YP_003502691.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615]
 gi|290765747|gb|ADD59707.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615]
          Length = 656

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 34/209 (16%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  +L AL  ++    LA P++  +    A+F             T+ G +++ TV   
Sbjct: 419 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 478

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358
           T          G+ L   P +     + L I+ EVS   +  +        ++  R    
Sbjct: 479 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 529

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + + +G T+V+ GLL   I+  +  +PLL  IP+LG LF +   +  +  + +   P +
Sbjct: 530 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFSSKSEHAAKRNLMLFIRPTI 589

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           ++    RD  R   H S E   K   FN+
Sbjct: 590 IRE---RDGFR---HASAE---KYLSFNQ 609


>gi|167820388|ref|ZP_02452068.1| Type III secretion system protein [Burkholderia pseudomallei 91]
          Length = 324

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 67  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 115

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 116 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 173

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 174 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 233

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 234 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 287


>gi|226953742|ref|ZP_03824206.1| fimbrial assembly protein PilQ [Acinetobacter sp. ATCC 27244]
 gi|226835474|gb|EEH67857.1| fimbrial assembly protein PilQ [Acinetobacter sp. ATCC 27244]
          Length = 590

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 5/179 (2%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           L  F  +  L A++       ++ P +     Q A   SG +  Y + S+  GA +V   
Sbjct: 413 LSDFMLDLELSAVQADGFGEVISTPKVMTADKQPAKIESGTKIPYAS-STGGGANAVPKT 471

Query: 311 ---DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              D  + L  TP++   G++ +++      P      G + +      DT V + +G T
Sbjct: 472 EFIDATLSLDVTPSITPDGKVMMKLNIAKDAPGAPTPTGQL-TISKNSIDTNVLVDNGET 530

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +VL G+ + +    +  +P L  +P +G LFR       + E+ I  TP +V     R+
Sbjct: 531 VVLGGIFEQENLSSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTRN 589


>gi|328472347|gb|EGF43217.1| fimbrial assembly protein [Vibrio parahaemolyticus 10329]
          Length = 570

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GATSVT     + L  T
Sbjct: 408 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVT 466

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 467 PQITPDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHS 526

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 527 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 568


>gi|289662170|ref|ZP_06483751.1| fimbrial assembly protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 652

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 8/175 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----GATSVT 308
           F+ +  L A++       ++ P +   + +      G +  Y T+S +         +V 
Sbjct: 472 FNLDIELSAMQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGAGAAGGGSQANVQ 531

Query: 309 THDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
             +  + L  TPT+ +  R+ L +   + EV+  +     G +P    R+ +T V +  G
Sbjct: 532 FKEVLLELKVTPTITNDNRVFLNMNVKKDEVARFITLPQYGTVPEINRREVNTAVLVADG 591

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+V+ G+ +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 592 ETVVIGGVYEFTDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 646


>gi|308126655|ref|ZP_05911606.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AQ4037]
 gi|308108444|gb|EFO45984.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AQ4037]
          Length = 582

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GATSVT     + L  T
Sbjct: 420 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVT 478

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 479 PQITPDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHS 538

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 539 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 580


>gi|213024547|ref|ZP_03338994.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 284

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 69  LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 127

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P
Sbjct: 128 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 184

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP+L K+P++G+LFR S  N+           F+++P  
Sbjct: 185 HGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN-----VVRVFMIEPKE 239

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 240 IVDPLTPDASESVNN 254


>gi|282892150|ref|ZP_06300624.1| hypothetical protein pah_c209o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497951|gb|EFB40296.1| hypothetical protein pah_c209o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 852

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 26/181 (14%)

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------------DYGVVL 316
           I+  A P++ AI+   A+       + + +S STG   + T              YG+ +
Sbjct: 618 IQINASPSVVAINQTPATI-----EIAEEISVSTGIFEIPTEGNVTLKDSFARARYGIKI 672

Query: 317 HFTPTVLSPGRIG--------LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
              PT+     +         + ++T++    I  +    P    R     V +P   T+
Sbjct: 673 EIIPTIHVREDMNDPEDPVDYVTLETDILFETINPSVDSRPDVTRRHITNQVRIPDQQTV 732

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           ++ GL + ++   KE IP L +IP +G LF  ++     TE+FI  TP ++   A  D  
Sbjct: 733 IIGGLRRKNLSDSKESIPYLGEIPGIGKLFSITQLTDSATEMFIFITPKIITEAA-EDFD 791

Query: 429 R 429
           R
Sbjct: 792 R 792


>gi|319786312|ref|YP_004145787.1| type IV pilus secretin PilQ [Pseudoxanthomonas suwonensis 11-1]
 gi|317464824|gb|ADV26556.1| type IV pilus secretin PilQ [Pseudoxanthomonas suwonensis 11-1]
          Length = 619

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 6/173 (3%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--- 310
           F+ +  L AL++      L+ P +   + + A    G +  Y T++        T +   
Sbjct: 442 FALDLELSALQQEGRGEVLSNPRVVTSNQREAVIRQGREVGYVTLTGGGNQAFATPNVQF 501

Query: 311 -DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGT 367
            +  + L  TPT+ S  R+ + +     E +  I  + G +P    R+ +T V +  G T
Sbjct: 502 KEVVLELKVTPTITSDDRVFMAVNVLKDEVLQYIDTSIGQVPEIATREINTAVLVDDGQT 561

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +V+ G+ +         +P L  +P LG LF+     +E+ E+ I  TP +++
Sbjct: 562 VVIGGVYEFTDSNSVSKVPFLGDVPFLGNLFKKKSRLKEKAELLIFLTPKVMR 614


>gi|254455430|ref|ZP_05068859.1| type II Secretion PilQ [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082432|gb|EDZ59858.1| type II Secretion PilQ [Candidatus Pelagibacter sp. HTCC7211]
          Length = 516

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 113/258 (43%), Gaps = 34/258 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ------------HSITGSSSGPS--- 227
           KV+N ++I  E QV ++  + +   +  KQ+G +              I GS+S      
Sbjct: 261 KVLNEIDIKTE-QVLIEAFVVKATSEFEKQLGTRLGGYYKRNDEQIGGIVGSTSSAGTLD 319

Query: 228 ------KSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLT 278
                    A D    F + G    + G+L +      +  + ALE+   + T++ P + 
Sbjct: 320 DTSAALAQVAKDQITNFAATGATSGI-GILKKTGSAVLKAEITALEKMGMVETISNPKVF 378

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            I+ Q AS T G +  Y+T S  T +TS    +  + L  TP+++  G + L IQ    +
Sbjct: 379 TINNQPASVTQGKEIPYETTSEGTTSTSF--KEAALKLQVTPSIIGDGNVLLDIQVNNDD 436

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-LLSKIPILGAL 397
                 + D P     +  T + +  G  +V+ G+  ++I + KE +P  L  +P++G L
Sbjct: 437 ---ADTSQDEPPITKMEIITKLLVADGDIVVIGGIKSNNISKAKEQVPGGLGNVPVIGNL 493

Query: 398 --FRNSRFNREETEIFIA 413
             ++      EE  IFIA
Sbjct: 494 LKYKKKEDKLEELLIFIA 511


>gi|148546330|ref|YP_001266432.1| general secretion pathway protein D [Pseudomonas putida F1]
 gi|148510388|gb|ABQ77248.1| general secretion pathway protein D [Pseudomonas putida F1]
          Length = 584

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ   F +G      T +++    ++   + GV L   P +     + L I  EVS    
Sbjct: 402 GQEVPFVTGS----VTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIAD 457

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN- 400
             +A D+ + + R+  T V +   G ++L GL+ D++    + +PLL  IP LG LFR+ 
Sbjct: 458 TSSASDVITNK-REIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYLGRLFRSD 516

Query: 401 -SRFNREETEIFIAATPFLVKPVAMRD 426
            +R  ++   +FI       +P  +RD
Sbjct: 517 ATRNTKQNLMVFI-------RPRILRD 536


>gi|167898820|ref|ZP_02486221.1| Type III secretion system protein [Burkholderia pseudomallei 7894]
          Length = 325

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 68  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 116

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 117 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 174

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 175 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 234

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 235 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 288


>gi|26987782|ref|NP_743207.1| general secretion pathway protein D [Pseudomonas putida KT2440]
 gi|24982477|gb|AAN66671.1|AE016295_4 type II secretion pathway protein XcpQ [Pseudomonas putida KT2440]
          Length = 584

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ   F +G      T +++    ++   + GV L   P +     + L I  EVS    
Sbjct: 402 GQEVPFVTGS----VTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIAD 457

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN- 400
             +A D+ + + R+  T V +   G ++L GL+ D++    + +PLL  IP LG LFR+ 
Sbjct: 458 TSSASDVITNK-REIKTKVMVEDNGLVILGGLISDELSTSDQRVPLLGDIPYLGRLFRSD 516

Query: 401 -SRFNREETEIFIAATPFLVKPVAMRD 426
            +R  ++   +FI       +P  +RD
Sbjct: 517 ATRNTKQNLMVFI-------RPRILRD 536


>gi|261856527|ref|YP_003263810.1| type IV pilus secretin PilQ [Halothiobacillus neapolitanus c2]
 gi|261836996|gb|ACX96763.1| type IV pilus secretin PilQ [Halothiobacillus neapolitanus c2]
          Length = 729

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 4/164 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL--H 317
           L AL+       ++ P +   +G +A  + G +  Y    ++ G  S T      VL   
Sbjct: 556 LSALQSEGTGEIVSSPKVITTNGHTALISQGTEIPYIATQTAGGVASNTVSFKKAVLSTE 615

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            TP +     I + I  +  EP     +     P    R+  T VE+ +G T+VL G+ +
Sbjct: 616 VTPQITPNNNIIMDIDVKKDEPDYTNLLPGTTNPPINTREVKTKVEVKNGETVVLGGIYQ 675

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +       +P    +P +G LF+N     +  E+ I  TP ++
Sbjct: 676 FENNNSINKVPFFGDLPGIGNLFKNKEVKNQRLELLIFVTPKII 719


>gi|28899520|ref|NP_799125.1| fimbrial assembly protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28807756|dbj|BAC61009.1| fimbrial assembly protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 578

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GATSVT     + L  T
Sbjct: 416 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVT 474

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 475 PQITPDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHS 534

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 535 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 576


>gi|291569731|dbj|BAI92003.1| bifunctional pilus assembly protein PilQ/type II secretion pathway
           protein D [Arthrospira platensis NIES-39]
          Length = 785

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 24/182 (13%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F + L A   +   + L +PTL    G++AS     Q + + + S T  T+ T    G  
Sbjct: 585 FLSTLQAQIVSGRAKILTDPTLVVQEGETASV----QLVQEVLQSRT--TTFTDTPSGTR 638

Query: 316 LHFTPTVLSPG-RIGLRIQ-------------TEVSEP--VIGVNAGD--MPSYRVRKAD 357
               P ++  G  +G+ +Q              EVS P   +G    D  +  +R     
Sbjct: 639 ETIQPQLVPVGLTLGVNVQRIDDNGFVTMTINPEVSSPGSQVGTGGDDFVLQIFRRNLQS 698

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             + L  G T++++G+++D  +     IPLL  +PILG+LFR S  + E  E+ +  TP 
Sbjct: 699 GRIRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPILGSLFRRSSTSSERAEVIVLVTPS 758

Query: 418 LV 419
           ++
Sbjct: 759 IL 760


>gi|284052867|ref|ZP_06383077.1| type II and III secretion system protein [Arthrospira platensis
           str. Paraca]
          Length = 785

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 24/179 (13%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F + L A   +   + L +PTL    G++AS     Q + + + S T  T+ T    G  
Sbjct: 585 FLSTLQAQIVSGRAKILTDPTLVVQEGETASV----QLVQEVLQSRT--TTFTDTPSGTR 638

Query: 316 LHFTPTVLSPG-RIGLRIQ-------------TEVSEPVIGVNAGD----MPSYRVRKAD 357
               P ++  G  +G+ +Q              EVS P   V  G     +  +R     
Sbjct: 639 ETIQPQLVPVGLTLGVNVQRIDDNGFVTMTINPEVSSPGSQVGTGGDDFVLQIFRRNLQS 698

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
             + L  G T++++G+++D  +     IPLL  +PILG+LFR S  + E  E+ +  TP
Sbjct: 699 GRIRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPILGSLFRRSSTSSERAEVIVLVTP 757


>gi|225166011|ref|ZP_03727761.1| Type II secretory pathway component PulD-like protein [Opitutaceae
           bacterium TAV2]
 gi|224799746|gb|EEG18225.1| Type II secretory pathway component PulD-like protein [Opitutaceae
           bacterium TAV2]
          Length = 693

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 31/176 (17%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-------------KTVSSS 301
           S    L A+E++   +TL+ P LT I+ + A+   G    Y             ++ SS 
Sbjct: 444 SLTATLTAIEQSGESQTLSAPRLTVINNRPATIRDGKTQYYYEEYQVSQTILENRSTSSL 503

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAG-------------- 346
             +   T    GV L    ++   GR I L ++  VS+ V  V                 
Sbjct: 504 VPSGKPTKLSAGVSLDVLASIGGDGRSIMLALKPSVSQDVELVTFATVSDLDSSGRVVST 563

Query: 347 ---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               +P  R ++  T V + SG T+V+ G++++      E +P+L  IP LGALFR
Sbjct: 564 FDIKLPQSRDQEISTRVIVQSGETVVMGGVIENVQSTFTESVPVLGAIPYLGALFR 619


>gi|222100907|ref|YP_002535475.1| Secretin/TonB, short N-terminal domain precursor [Thermotoga
           neapolitana DSM 4359]
 gi|221573297|gb|ACM24109.1| Secretin/TonB, short N-terminal domain precursor [Thermotoga
           neapolitana DSM 4359]
          Length = 380

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 17/184 (9%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERAT-----------AIRTLAEPTLTAISGQSASFT 288
           SEG +F++  +L++ + + V + L+ +            + + LA P L   SG S  F+
Sbjct: 192 SEGENFTI-NLLEK-ALDIVFNTLDYSVLSHIELSIGDGSAKLLANPRLRLQSGSSGKFS 249

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           +  Q  Y  +++      V + + G  +   P +L    + L ++   S   +  N G +
Sbjct: 250 AKTQRNY--ITTENDKKVVKSVELGTEVEIKPFLLRDNTVSLTVKI-TSSNALDKNEG-L 305

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P    +  + TV L  G T+ + G+  D    + + +PLL  IP+ G LF+     +   
Sbjct: 306 PDTTSQSIEGTVRLKLGETVAIGGIGFDTYTTVTDKVPLLGDIPVFGYLFKKETERKIHK 365

Query: 409 EIFI 412
           EI I
Sbjct: 366 EILI 369


>gi|167828759|ref|ZP_02460230.1| Type III secretion system protein [Burkholderia pseudomallei 9]
          Length = 326

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 69  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 117

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 118 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 175

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 176 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 235

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 236 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 289


>gi|307823412|ref|ZP_07653641.1| type II and III secretion system protein [Methylobacter
           tundripaludum SV96]
 gi|307735397|gb|EFO06245.1| type II and III secretion system protein [Methylobacter
           tundripaludum SV96]
          Length = 554

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 21/176 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTHD-- 311
           F   +  +E       L+ P ++ ++ QSA    G    + T     + GAT V      
Sbjct: 347 FRAFVELMETQGKTNVLSSPRISTLNNQSAIIKVGQDEYFATGFNGGTPGATGVAPTAPT 406

Query: 312 -------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKA 356
                   G+ L  TP +     I L I   +S+  +  +  D        +    VR++
Sbjct: 407 VLIDVFFSGISLDVTPQIDDNEDITLHIHPSISQ--VKKDTKDFGLDITLPLALTTVRES 464

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           D+ V+  +G  IVL GL++++  + K+G+  L+ IP +G LFR +    +++E+ I
Sbjct: 465 DSIVKAKNGQIIVLGGLMQENDNEKKQGVTGLAAIPYIGNLFRVNTGTTQKSELII 520


>gi|254445969|ref|ZP_05059445.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198260277|gb|EDY84585.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 736

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 15/183 (8%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTG 303
           GV+   +   +L+     + ++ L+ PTL     + A+          T S     S T 
Sbjct: 503 GVISGLTLNGILNTARSNSNVQLLSVPTLVTTHNKEATIVVAEARPIVTSSQTSSISDTF 562

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKAD 357
             +V   D G+ L  TP ++ P  +   IQ E+ + +      + ++  D P    R+A 
Sbjct: 563 RQNVQYEDIGIELTVTP-LIGPNDV---IQLEIDQKIDDISGKVTIDGNDQPIIGRRQAT 618

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           + V + +   +VL GL ++ + + +  +  L +IP+LG LF        +TE+ +   P 
Sbjct: 619 SYVSVANHELVVLGGLQRNRVTKGRSKMSFLGEIPLLGGLFNRRSDESVKTELLVFIRPE 678

Query: 418 LVK 420
           +++
Sbjct: 679 VIR 681


>gi|257092259|ref|YP_003165900.1| type II and III secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044783|gb|ACV33971.1| type II and III secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 624

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P  R R+ ++ + + SG   VL GL++D I      +P L  IP +G +F N   +  +
Sbjct: 511 VPQIRTREIESMLRVESGDIAVLGGLMEDRIGNTVGRLPGLGDIPFVGEVFNNRGNSSSK 570

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
           +E+ +     L++P  +RD S   D  S  +      F R +++Y P
Sbjct: 571 SELVV-----LLRPTVIRDASIDGDFSSFREFLPKKDFFRTDQVYRP 612


>gi|167850214|ref|ZP_02475722.1| Type III secretion system protein [Burkholderia pseudomallei B7210]
          Length = 333

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 76  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 124

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 125 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 182

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 183 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 242

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 243 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 296


>gi|153868094|ref|ZP_01998196.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           SS]
 gi|152144586|gb|EDN71804.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           SS]
          Length = 219

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 4/173 (2%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G +  +  +  L A++   +   ++ P +   + Q A  T G +  Y   S+  GA +  
Sbjct: 48  GKIGSYLLQLELSAMQSEGSGEIISSPRIITGNQQEAIITQGSEIPY-VESAGVGAVAQV 106

Query: 309 THDYGVV-LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
                V+ L  TP +    RI + +   + +  +G       S   R+  T V + +G T
Sbjct: 107 QFKQAVLELKVTPQITPDDRINMELS--IKKDSVGARINGNISIDKREVKTNVLVDNGDT 164

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +VL G+ +         +P LS +P++G LF+      +++E+ I  TP ++K
Sbjct: 165 VVLGGVYERSSSNNITRVPFLSDLPLIGNLFKRRSSQDDKSELLIFVTPRIIK 217


>gi|76817430|ref|YP_335745.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1710b]
 gi|76581903|gb|ABA51377.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710b]
          Length = 339

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 82  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 130

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 131 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 188

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 189 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 248

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 249 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 302


>gi|269214941|ref|ZP_06158925.1| type IV pilus secretin PilQ [Neisseria lactamica ATCC 23970]
 gi|269208722|gb|EEZ75177.1| type IV pilus secretin PilQ [Neisseria lactamica ATCC 23970]
          Length = 254

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  Y+  SSS  ++S TT     VL  T
Sbjct: 83  LSASESLSKTKTLANPRVLTQNRKEAKIESGTEIPYQDTSSSGSSSSTTTTFKKAVLGLT 142

Query: 320 --PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     PV   V        + +  +T   + +GGT+++ G+ ++
Sbjct: 143 VTPNITPDGQIIMTVKINKDTPVDCTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEE 202

Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412
           +       +PLL  IP++G LF  R    NR E  IFI
Sbjct: 203 ENGNTLTKVPLLGDIPVIGNLFKTRGKSTNRRELLIFI 240


>gi|300693821|ref|YP_003749794.1| type III secretion protein [Ralstonia solanacearum PSI07]
 gi|299075858|emb|CBJ35167.1| Type III secretion protein [Ralstonia solanacearum PSI07]
          Length = 590

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + AL++    R  A P +  +    A   +  Q+ Y  V+    A  +     GV L   
Sbjct: 429 ISALQQTNQARITANPKVATLDNTEAVMDNR-QNFYVPVAGYQSA-DLYAISAGVSLRVL 486

Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P V+  G   RI + +  E  + +     G++P     + DT   +  G ++++AG   D
Sbjct: 487 PMVVMDGGTVRIRMNVHIEDGQ-ITSQQVGNLPVTSQSEIDTQALINEGESLLIAGYSVD 545

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              +  + +P LSKIP++GALFR  +   +  +     TP ++ P
Sbjct: 546 QQAKTVDAVPGLSKIPLVGALFRTDQTTGQRFQRMFLVTPRVITP 590


>gi|218988958|gb|ACL13621.1| invasion protein InvG [Salmonella enterica subsp. salamae serovar
           Sofia]
          Length = 562

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 78/195 (40%), Gaps = 16/195 (8%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           LD   F   ++ALE       ++ P L       A F +      K +     A    T 
Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405

Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            YG ++   P   + G+I + +       +T  ++    V+A  +P        T   +P
Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQTDTTTSVDA--LPEVGRTLISTIARVP 462

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G ++++ G  +D      + IP L KIP +G+LFR S  N+           F+++P  
Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKIPFIGSLFRYSSKNKSNV-----VRVFMIEPKE 517

Query: 424 MRDLSRPDDHYSVED 438
           + D   PD   SV +
Sbjct: 518 IVDPLTPDASESVNN 532


>gi|254447525|ref|ZP_05060991.1| type II and III secretion system protein [gamma proteobacterium
           HTCC5015]
 gi|198262868|gb|EDY87147.1| type II and III secretion system protein [gamma proteobacterium
           HTCC5015]
          Length = 506

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 43/231 (18%)

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVL----------------DRFSFETVLHA----LERA 266
           S+S+ A    + V  GG+++++  +                ++ S ++V  A    LE+ 
Sbjct: 257 SQSYQAGVDWQRVMNGGEWTLQQSMTKPSLAASPMTLLAQHEKQSRDSVTRAAVTLLEQF 316

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDY------GVV 315
             +   + P + A++ Q +      + +Y T+     ++S GAT+ T   +      G  
Sbjct: 317 GDVNVHSRPRIVALNNQPSLLKVIDKRVYFTLDVQNTTASGGATTSTVETHINTLPVGFT 376

Query: 316 LHFTPTVLSPG-----RIGL-RIQTEVSEPVIGVNA----GDMPSYRVRKADTTVELPSG 365
           +  TP V         R  L RI   V +P   + A      +P   VR+ +T + L   
Sbjct: 377 MSVTPFVTQSDVTLSVRPSLSRITRFVDDPSPALAAEGIVSRVPEVEVREMETLLRLDGE 436

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAA 414
            T ++ GL+++   +    +P+LS+IP LG LF  R  R+N+ E  I + A
Sbjct: 437 QTALIGGLMQERRSEEHYAVPVLSRIPWLGELFKGREERWNKSELVILLRA 487


>gi|319761560|ref|YP_004125497.1| type iv pilus secretin pilq [Alicycliphilus denitrificans BC]
 gi|330823429|ref|YP_004386732.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans K601]
 gi|317116121|gb|ADU98609.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans BC]
 gi|329308801|gb|AEB83216.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans K601]
          Length = 713

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 89/201 (44%), Gaps = 16/201 (7%)

Query: 231 AADFGGKFVSEGGDFS-VKGV-----------LDRFSFETVLHALERATAIRTLAEPTLT 278
           A + GG FV+     S V GV            +RF     L A+E     + ++ P L 
Sbjct: 510 AVNVGGNFVNLPASLSNVTGVGSFALSIFNSAANRF-LTLELSAMEADGQGKVVSSPRLI 568

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
                 A    G ++ Y +V++  GAT++      + L   P +   G I L +  +V++
Sbjct: 569 TADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVVPQITPEGNIILDL--DVNK 625

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G +     +   +   T V + +GGT+V+ G+ + +    +  IPLL  +P++G LF
Sbjct: 626 DSRGESTTQGVAIDTKHIKTQVLVENGGTVVIGGIFELEETNQENKIPLLGDVPVMGNLF 685

Query: 399 RNSRFNREETEIFIAATPFLV 419
           ++      + E+ +  TP ++
Sbjct: 686 KSRTKESSKREMLVFITPKVI 706


>gi|300697476|ref|YP_003748137.1| type III secretion protein [Ralstonia solanacearum CFBP2957]
 gi|299074200|emb|CBJ53745.1| Type III secretion protein [Ralstonia solanacearum CFBP2957]
          Length = 589

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + AL++    R  A P +  +    A   +  Q+ Y  V+    A  +     GV L   
Sbjct: 428 ISALQQTNQARITASPKVATLDNTEAVMDNR-QNFYVPVAGYQSA-DLYAISAGVSLRVL 485

Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P V+  G   RI + +  E  + +     G++P     + DT   +  G ++++AG   D
Sbjct: 486 PMVVMDGGTVRIRMNVHIEDGQ-ITSQQVGNLPVTSQSEIDTQALINEGESLLIAGYSVD 544

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              +  + +P LSKIP++GALFR  +   +  +     TP ++ P
Sbjct: 545 QQAKTVDAVPGLSKIPLVGALFRTDQTTGQRFQRMFLVTPRVITP 589


>gi|262195825|ref|YP_003267034.1| general secretion pathway protein D [Haliangium ochraceum DSM
           14365]
 gi|262079172|gb|ACY15141.1| general secretion pathway protein D [Haliangium ochraceum DSM
           14365]
          Length = 842

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGAT---- 305
           SF  +  AL  ++ +  L+ P +   + + A  + G    Y++      ++ TG +    
Sbjct: 530 SFGVLFQALATSSNVNVLSSPHIVTTNNEEAEISVGQNIPYQSGLSGLPTAGTGVSFPVQ 589

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           SV   D  + L  TP + +   + L I  E+S+      AG  PS+  R   TTV +   
Sbjct: 590 SVQRQDVALTLKITPHINASDMVTLEIDQEISDIASPDFAGLGPSWSKRTVKTTVVVRDQ 649

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +IV+ GL+ D +   +  +PLL  +P+LG  F+ +   + +T + I  TP+++K
Sbjct: 650 QSIVIGGLMSDRMTYNESKVPLLGDLPLLGYFFKFTERQKSKTNLLILLTPYVIK 704


>gi|255619353|ref|XP_002540016.1| General secretion pathway protein D precursor, putative [Ricinus
           communis]
 gi|223500090|gb|EEF22367.1| General secretion pathway protein D precursor, putative [Ricinus
           communis]
          Length = 304

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 7/157 (4%)

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305
           K V        + HALE       L+ P +  +  + A+   G      T S +TGA+  
Sbjct: 147 KQVNGELGLGAIAHALESTGHANILSTPNMITLDNELATIKVGQNIPIITGSFTTGASGA 206

Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
                +V   D G++L   P +   G I L I  E S     V++       VR  ++ V
Sbjct: 207 SNPFQTVDRKDVGLLLKVRPQISEGGTIKLAIYHENSGIDNSVSSASGIVTTVRAIESNV 266

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
              +G  +VL GL+ DD  +  E +  L  IPILG L
Sbjct: 267 LADNGQIVVLGGLISDDESENNEKVRGLGDIPILGNL 303


>gi|21232657|ref|NP_638574.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767269|ref|YP_242031.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114464|gb|AAM42498.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572601|gb|AAY48011.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 648

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 316 LHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L  TPT+ +  R+ L +   + EV+  +     G +P    R+ +T V +  G T+V+ G
Sbjct: 535 LKVTPTITNDNRVFLNMNVKKDEVARFITLPQYGTVPEINRREVNTAVLVADGETVVIGG 594

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 595 VYEFTDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642


>gi|50086334|ref|YP_047844.1| putative outer membrane protein (ComQ) [Acinetobacter sp. ADP1]
 gi|12642803|gb|AAK00351.1|AF329876_7 putative outer membrane protein ComQ [Acinetobacter sp. BD413]
 gi|49532310|emb|CAG70022.1| putative outer membrane protein (ComQ) [Acinetobacter sp. ADP1]
          Length = 723

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 5/172 (2%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-TVSSSTGATSVTT 309
           L  F  +  L AL+       ++ P + +   Q A   +G +  Y+ T +S+ G+T+ T+
Sbjct: 546 LSDFMLDLELSALQADGYGEVISTPKVMSADKQKAKVATGVEVPYQSTTNSAAGSTATTS 605

Query: 310 HDYGVV-LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA-DTTVELPSGGT 367
               ++ L  TP +   G+I + +   ++   I   A +  +   +   +T V + +G T
Sbjct: 606 FKEALLSLEVTPNITPDGKILMEL--NIANDSINSYAQNGEAILNKNTINTNVLVNNGET 663

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +VL G+ +         +P L  +P +G LF+ +  +  + E+ I  TP +V
Sbjct: 664 VVLGGVFEQTTNNAVTKVPFLGDLPYVGRLFKKTAKSEAKNELLIFVTPRIV 715


>gi|167923347|ref|ZP_02510438.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei BCC215]
          Length = 353

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 96  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 144

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 145 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 202

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 203 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 262

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 263 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 316


>gi|167908440|ref|ZP_02495645.1| Type III secretion system protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 360

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 103 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 151

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 152 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 209

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 210 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 269

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 270 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 323


>gi|225874512|ref|YP_002755971.1| type II/III secretion system protein [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792554|gb|ACO32644.1| type II/III secretion system protein [Acidobacterium capsulatum
           ATCC 51196]
          Length = 786

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 12/144 (8%)

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTH----DYGVVL 316
           T  + + EP + A  GQ A    G +    T S  TGA +      V T     D GV +
Sbjct: 395 TDTQIIQEPRIRASDGQDAQLKIGEKLPVATGSYQTGAATAIVSSLVNTQFQYLDVGVNI 454

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLL 374
              PTVLS   + ++++ +VS      N G  D P    R AD T+ L +G   ++ G+ 
Sbjct: 455 DVKPTVLSDRDVSMKVKIDVSSTNGTENLGGVDEPIITQRVADETIRLKNGEANLIGGIR 514

Query: 375 KDDIQQLKEGIPLLSKIPILGALF 398
           +        G P LS++P+L  +F
Sbjct: 515 QVQTSNSLSGTPGLSELPLLKYIF 538


>gi|253771851|ref|YP_003034682.1| type II and III secretion system protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|242378852|emb|CAQ33644.1| gspD [Escherichia coli BL21(DE3)]
 gi|253322895|gb|ACT27497.1| type II and III secretion system protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253979310|gb|ACT44980.1| general secretory pathway component, cryptic [Escherichia coli
           BL21(DE3)]
          Length = 338

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P++  R     V + +G T+VL GLL D  ++    +PLL  IP++G LFR +   R + 
Sbjct: 212 PTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKR 271

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHY 434
            + +      ++P  +RD    DD Y
Sbjct: 272 NLMV-----FIRPTIIRD----DDVY 288


>gi|257458871|ref|ZP_05623994.1| bacterial type II and III secretion system protein [Campylobacter
           gracilis RM3268]
 gi|257443859|gb|EEV18979.1| bacterial type II and III secretion system protein [Campylobacter
           gracilis RM3268]
          Length = 389

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 13/213 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           +QV  K+TI E   +  K IG   +  G   +      F       + +E    + K   
Sbjct: 163 EQVNFKLTILETNTNDYKDIGSHLNSLGDVVTRSDLNYFINLITMPYSAETNVVTTK--- 219

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVT 308
            +  F  VL  L++         P L A SG    F+S     Y T +S+    G  +  
Sbjct: 220 -KRGFYGVLSLLQQNGVTTIKQSPFLVAKSGAEVYFSSVENVPYLTNTSTYTQNGTATQN 278

Query: 309 THDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +++Y   G+ +   P VL    +   +   V E ++       P    ++  +   L  G
Sbjct: 279 SYEYKDVGLKIKIRPVVLQNSNVDFSLDL-VVEDLLDTQNTLTPRTSKKELKSNYSLKRG 337

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             +VL+G+ KD     + G+PLL  IPIL  LF
Sbjct: 338 ELLVLSGINKDVAYSKRNGVPLLKDIPILKYLF 370


>gi|32471402|ref|NP_864395.1| protein transporter [Rhodopirellula baltica SH 1]
 gi|32443243|emb|CAD72074.1| conserved hypothetical protein-putative protein transporter
           [Rhodopirellula baltica SH 1]
          Length = 521

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 17/162 (10%)

Query: 273 AEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTH------DYGVVLHFTPTVLSP 325
           A P + A  G+ A+     +  +      STG  SV         D G++L  TP +   
Sbjct: 352 ATPHVMAKDGEQANIAINRETFFSVQPPGSTGNNSVFFQQNIQKVDAGIMLDITPHIRG- 410

Query: 326 GRIGLRIQ-TEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
             + + I+  EVSE      P + +N    P    R   TTV +  G TIV+ GL++ + 
Sbjct: 411 DEVTIDIEKAEVSEDVRNATPALSINQ--YPIINRRSVSTTVSVKDGKTIVIGGLVQRET 468

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                 IP LS++P +G LF+ ++    + E+ I  +P +V+
Sbjct: 469 VDRVNRIPGLSRLPGVGYLFQTTQRQTRDAEVVIFISPRIVR 510


>gi|254238253|ref|ZP_04931576.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa C3719]
 gi|126170184|gb|EAZ55695.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa C3719]
          Length = 710

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 3/210 (1%)

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
           FQ   T  +   S +   D G K  + G    +  + D    +  L A+E+      +++
Sbjct: 500 FQGQCTFPTRDNSPTPFVDMGAKDATSG--IGIGFITDNIILDLQLSAMEKTGNGEVVSQ 557

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +     ++A    G +  Y+  SSS  ATS +  +  + L  TP +    RI + ++ 
Sbjct: 558 PKVVTSDKETAKILKGSEIPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKV 616

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
               P        +P     + +  + +  G TIV+ G+  +   +  + +P L  +P L
Sbjct: 617 TKDAPDFQNALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQTKAVDKVPFLGDLPYL 676

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G LFR    +  + E+ +  TP ++   A+
Sbjct: 677 GRLFRRDTVSDTKNELLVFLTPRIMNNQAI 706


>gi|94968501|ref|YP_590549.1| type II and III secretion system protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550551|gb|ABF40475.1| type II and III secretion system protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 808

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
           +  +  L A E+   ++ L+ P +   +  +A    G +    T+S   G  +VT  D  
Sbjct: 641 YGLDLYLSAAEQRGLLKILSRPRVVTQNNVTALVRQGFRLPVVTLSQLNGPPTVTYVDAF 700

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L  TP +     I L +  E + P         P    ++  T V +  GGT+ + G+
Sbjct: 701 LRLTVTPQITVENTIFLAVDVENTTPDFTRTVLGNPILLTQQTTTQVLVTDGGTVTIGGV 760

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++       + +P+L  IPIL  LF +   N +  E+    TP +V+
Sbjct: 761 VQTQNTLTSQEVPILGDIPILKYLFMHKTTNTQTQELIFFITPKIVQ 807


>gi|37527640|ref|NP_930984.1| Type III secretion component protein SctC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787075|emb|CAE16150.1| Type III secretion component protein SctC [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 614

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 10/178 (5%)

Query: 243 GDFSVKGVLDRFSFETVLHA---LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           G  ++  ++DR   + +L     LE   + + ++ PTL       A   +   +  K   
Sbjct: 335 GSAALGSLVDRRGLDYLLAKITLLESKGSAQVISRPTLLTQENTQAVIDNNETYYVKVNG 394

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRK 355
                    T  YG +L   P V+  G    I L +  E        +  D +P+     
Sbjct: 395 ERVAELKSLT--YGTMLRMIPRVIQVGDSSEISLDLHIEDGNQKPNSSGQDGIPTISRTV 452

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN-SRFNREETEIFI 412
            DT   +  G ++++ G+ +D++ Q+   +P L  IP LG LFRN S   R    +FI
Sbjct: 453 VDTVARVGHGQSLLIGGIYRDEMSQITRKVPFLGDIPYLGVLFRNTSEQVRRSVRLFI 510


>gi|319786555|ref|YP_004146030.1| general secretion pathway protein D [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465067|gb|ADV26799.1| general secretion pathway protein D [Pseudoxanthomonas suwonensis
           11-1]
          Length = 711

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 8/123 (6%)

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELP 363
           ++   D GV L   P + S G I L I+ EVS  V G    + D      R+ +T V + 
Sbjct: 522 TIDRQDVGVRLTVRPQINSGGGITLAIRQEVSS-VSGTVSRSSDELVLNKREIETNVVVD 580

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G  I L GLL       ++ +PLL  IP+LGALFR++  +   T + +    FL +P  
Sbjct: 581 DGAMIALGGLLDHTSSDRRDKVPLLGDIPVLGALFRSTSRSSTRTNLMV----FL-RPTV 635

Query: 424 MRD 426
           +RD
Sbjct: 636 IRD 638


>gi|27550050|gb|AAO18033.1| LscC [Photorhabdus luminescens]
          Length = 621

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 10/178 (5%)

Query: 243 GDFSVKGVLDRFSFETVLHA---LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           G  ++  ++DR   + +L     LE   + + ++ PTL       A   +   +  K   
Sbjct: 342 GSAALGSLVDRRGLDYLLAKITLLESKGSAQVISRPTLLTQENTQAVIDNNETYYVKVNG 401

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRK 355
                    T  YG +L   P V+  G    I L +  E        +  D +P+     
Sbjct: 402 ERVAELKSLT--YGTMLRMIPRVIQVGDSPEISLDLHIEDGNQKPNSSGRDGIPTISRTV 459

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN-SRFNREETEIFI 412
            DT   +  G ++++ G+ +D++ Q+   +P L  IP LG LFRN S   R    +FI
Sbjct: 460 VDTVARVGHGQSLLIGGIYRDEMSQITRKVPFLGDIPYLGVLFRNTSEQVRRSVRLFI 517


>gi|167915501|ref|ZP_02502592.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 112]
          Length = 348

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 91  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 139

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 140 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 197

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 198 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 257

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 258 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 311


>gi|328951048|ref|YP_004368383.1| type II and III secretion system protein [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451372|gb|AEB12273.1| type II and III secretion system protein [Marinithermus
           hydrothermalis DSM 14884]
          Length = 523

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 94/241 (39%), Gaps = 29/241 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV LKV + EV   +   +G +      S G   +   D G   +     F     L   
Sbjct: 282 QVQLKVRVQEVDSQVFNNLGLKWD--SLSGGNLIASVLDNGLNLI-----FDATRSLASL 334

Query: 255 SFETVLHALERATAIRTLAEPTLT-------------AISGQSASFTSGGQHLYKTVSSS 301
           +    L ALE+    R +++  L                  + A   +G + L       
Sbjct: 335 NIVATLDALEKQNLARRVSDANLIIEDNFGASDEDLRQTGAKGAELKAGAKLLLPI--RI 392

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-EPVIGVNAGDMPSYRVRKADTTV 360
            G   V   D G+ L   P + +  +I L + T+   +P     +G   S  + +  T  
Sbjct: 393 GGEIEVREFDVGLTLRLRPQITADRQILLEVFTQTGGDP----QSGPEGSILIPQKSTLS 448

Query: 361 EL--PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +L    G T+VL GL++  + + +  +P L  IPILG LFR +     +TE+ +  T  +
Sbjct: 449 KLRIKDGQTVVLGGLIERTVNKSENKVPFLGDIPILGMLFRQTSNEVRDTELLVVITANI 508

Query: 419 V 419
           V
Sbjct: 509 V 509


>gi|91227284|ref|ZP_01261709.1| fimbrial assembly protein [Vibrio alginolyticus 12G01]
 gi|91188678|gb|EAS74967.1| fimbrial assembly protein [Vibrio alginolyticus 12G01]
          Length = 560

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GAT+VT     + L  T
Sbjct: 398 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVT 456

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 457 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 516

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 517 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 558


>gi|262394223|ref|YP_003286077.1| putative maturation protein [Vibrio sp. Ex25]
 gi|262337817|gb|ACY51612.1| putative maturation protein [Vibrio sp. Ex25]
          Length = 353

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 17/174 (9%)

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           EGGDF+            ++ A+ +    + L+ P +  +  +    T G    + T S 
Sbjct: 184 EGGDFN-----------ALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSE 232

Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
            T        +   D GV L   P V+    + L+I  +         A D+ +   R  
Sbjct: 233 VTDGGNRVQQIERKDVGVSLEVVPHVIG-DHVVLQIMQKSDSVTDSSIASDIIT-NTRTL 290

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            T V++    TI L GL+  + +    G+P+L  +P+LGALFR+ + N  + E+
Sbjct: 291 QTVVKVKDRQTISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKEL 344


>gi|313110077|ref|ZP_07795979.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa 39016]
 gi|310882481|gb|EFQ41075.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa 39016]
          Length = 714

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 5/205 (2%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           TG+S  PS     D G K  + G    +  + D    +  L A+E+      +++P +  
Sbjct: 511 TGTSKSPSPFV--DIGAKDATSG--IGIGFITDNIILDLQLSAMEKTGNGEIVSQPKVVT 566

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
              ++A    G +  Y+  SSS  ATS +  +  + L  TP +    RI + ++     P
Sbjct: 567 SDKETAKILKGQEVPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAP 625

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                   +P     + +  + +  G TIV+ G+  +   +  + +P L  +P LG LFR
Sbjct: 626 DFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLGDLPYLGRLFR 685

Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424
               +  + E+ +  TP ++   A+
Sbjct: 686 RDTVSDVKNELLVFLTPRIMNNQAI 710


>gi|158334571|ref|YP_001515743.1| secretion system protein [Acaryochloris marina MBIC11017]
 gi|158304812|gb|ABW26429.1| secretion system protein [Acaryochloris marina MBIC11017]
          Length = 682

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 19/169 (11%)

Query: 270 RTLAEPTLTAISGQSASFT------SGGQHLYKTVSSSTGATSVTT------HDYGVVLH 317
           + L  PTL    G SA         +G      +  S+ GAT+ +T       + GV+L+
Sbjct: 490 KILTNPTLLVQEGSSAQVNLTEQVFTGFVQRVSSSGSTAGATTDSTSTEPNIQNAGVILN 549

Query: 318 FT-PTVLSPGRIGLRIQTEVS----EPVIGVNAGDMP-SYRVRKADT-TVELPSGGTIVL 370
                +   G + L +  EVS       +   +GD     + R+ +T  V L  G TIVL
Sbjct: 550 VVVDHIDDNGFVTLNLSPEVSSLSGRTFVDALSGDTAFLLQQRRVETGKVRLRDGQTIVL 609

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G+++D  +     +P+L  IP+LG LFR     R+ +E+ +  TP +V
Sbjct: 610 TGIIQDQDRVDVSKVPILGDIPLLGRLFRRENKTRQRSELVVLVTPQIV 658


>gi|206889986|ref|YP_002248061.1| type II protein secretion protein-like protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741924|gb|ACI20981.1| type II protein secretion protein-like protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 538

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 22/186 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT- 308
           F +++ AL     +RTL+ P ++ ++GQ++ FT G  + +         +S TG+  +T 
Sbjct: 351 FSSLIKALGEFGDVRTLSNPRVSIMNGQTSLFTVGRNYSFISKAQSNVTTSGTGSPIITY 410

Query: 309 ---THDY--GVVLHFTPTVLSPGRIGLRIQ------TEVSEPVIGVNAGD----MPSYRV 353
              T +   G+++   P +   G I L I        E+     G +  +    +P   +
Sbjct: 411 TVETSNLLSGLIIGIVPYIDEKGEISLTITPIVSNLIEMRSATFGSSGAETTIQLPRVDL 470

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+  TTV++  G  I++ G++K +    +  +PLL  IP++G LF++       TE+ I 
Sbjct: 471 RELSTTVKVKDGEIIIIGGMIKKEESFSENKMPLLGDIPVVGELFKSKDKEETNTELVIL 530

Query: 414 ATPFLV 419
             P ++
Sbjct: 531 LQPRII 536


>gi|218894139|ref|YP_002443008.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa LESB58]
 gi|218774367|emb|CAW30184.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa LESB58]
          Length = 714

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 5/205 (2%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           TG+S  PS     D G K  + G    +  + D    +  L A+E+      +++P +  
Sbjct: 511 TGTSKSPSPFV--DIGAKDATSG--IGIGFITDNIILDLQLSAMEKTGNGEIVSQPKVVT 566

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
              ++A    G +  Y+  SSS  ATS +  +  + L  TP +    RI + ++     P
Sbjct: 567 SDKETAKILKGQEVPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAP 625

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                   +P     + +  + +  G TIV+ G+  +   +  + +P L  +P LG LFR
Sbjct: 626 DFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLGDLPYLGRLFR 685

Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424
               +  + E+ +  TP ++   A+
Sbjct: 686 RDTVSDVKNELLVFLTPRIMNNQAI 710


>gi|167724236|ref|ZP_02407472.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei DM98]
          Length = 351

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 94  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 142

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 143 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 200

Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +   G ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 201 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 260

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 261 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 314


>gi|254244078|ref|ZP_04937400.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa 2192]
 gi|126197456|gb|EAZ61519.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa 2192]
          Length = 714

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 5/205 (2%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           TG+S  PS     D G K  + G    +  + D    +  L A+E+      +++P +  
Sbjct: 511 TGTSKSPSPFV--DIGAKDATSG--IGIGFITDNIILDLQLSAMEKTGNGEIVSQPKVVT 566

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
              ++A    G +  Y+  SSS  ATS +  +  + L  TP +    RI + ++     P
Sbjct: 567 SDKETAKILKGQEVPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAP 625

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                   +P     + +  + +  G TIV+ G+  +   +  + +P L  +P LG LFR
Sbjct: 626 DFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLGDLPYLGRLFR 685

Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424
               +  + E+ +  TP ++   A+
Sbjct: 686 RDTVSDVKNELLVFLTPRIMNNQAI 710


>gi|32471479|ref|NP_864472.1| general secretion pathway protein D [precursor] [Rhodopirellula
            baltica SH 1]
 gi|32443320|emb|CAD72153.1| general secretion pathway protein D [Precursor] [Rhodopirellula
            baltica SH 1]
          Length = 1265

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 21/180 (11%)

Query: 260  LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----TVSSSTGATS------VTT 309
            L  L  A  ++ L+ P +   +  +  F   GQ   +    + +  TG T+      +  
Sbjct: 873  LRTLRVANRLQILSRPEIMT-ADNTEGFVQVGQSFPRPTELSFTGGTGGTASQPIIGIED 931

Query: 310  HDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSY----RVRKADTT 359
             + G++L  TP V + G I + I    S+       +IG    D+P +       +A  T
Sbjct: 932  EEIGIILRVTPRVGADGMIFMAIDASRSDINNNEGQIIGAFQDDVPIFVPAIDRTQAQAT 991

Query: 360  VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +    G T+V  GL++   Q     +P LS IP++G  F+      + +E+ +  TP LV
Sbjct: 992  ITAFDGQTVVFGGLIQKVRQNRTRRVPYLSNIPVVGTFFKFDSEIEQRSELLVVMTPILV 1051


>gi|332159936|ref|YP_004296513.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607512|emb|CBY29010.1| secretion system apparatus SsaC [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664166|gb|ADZ40810.1| Type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 493

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 12/212 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ + VTI +V    + Q+G   S + S  G   SF +   G+       FS   + +  
Sbjct: 267 QIEISVTIIDVDAGDISQLGIDWSASTSIGGAGVSFNS---GEAAPHSDGFSTV-IGNTG 322

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +F   L+AL++ +  R L+ P++  ++   A          K            T   G 
Sbjct: 323 NFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKLQGDKVAKLESITS--GS 380

Query: 315 VLHFTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           +L  TP ++    +      L IQ    +  +  ++  +P  +     T   L  G +++
Sbjct: 381 LLRVTPRMIDSDGVKEVLLNLNIQDGQQQAPLS-SSEPLPEIQNSDISTQATLRVGQSLL 439

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           L G ++D   + +  IPLL  IP+LG LFR++
Sbjct: 440 LGGFIQDKQIESQNKIPLLGDIPLLGGLFRST 471


>gi|254229802|ref|ZP_04923209.1| type IV pilus secretin PilQ subfamily [Vibrio sp. Ex25]
 gi|262393099|ref|YP_003284953.1| type IV pilus biogenesis protein PilQ [Vibrio sp. Ex25]
 gi|151937701|gb|EDN56552.1| type IV pilus secretin PilQ subfamily [Vibrio sp. Ex25]
 gi|262336693|gb|ACY50488.1| type IV pilus biogenesis protein PilQ [Vibrio sp. Ex25]
          Length = 582

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GAT+VT     + L  T
Sbjct: 420 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVT 478

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 479 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 538

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 539 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 580


>gi|284008887|emb|CBA75707.1| protein transport protein HofQ [Arsenophonus nasoniae]
          Length = 347

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 4/150 (2%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L A    SAS   G +  Y  +  S   + +   +  + +  TPT+L  G++ L 
Sbjct: 198 IASPRLMASHNHSASIKQGTEIPY--IIQSKNKSQIKFKEAILGMEVTPTILRGGKVRLA 255

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++   + P   + A       + K +  T V +  G T++L G+ +      ++ IP L+
Sbjct: 256 LKISQNTPNTSLLANTYQHIAINKQEISTQVTINHGETLILGGIFQQKKNNQQQKIPYLA 315

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP  G LF          E+ I  TP L+
Sbjct: 316 DIPFFGQLFTKDGKQTYHRELVIFITPQLI 345


>gi|269964448|ref|ZP_06178689.1| Fimbrial assembly protein PilQ [Vibrio alginolyticus 40B]
 gi|269830786|gb|EEZ85004.1| Fimbrial assembly protein PilQ [Vibrio alginolyticus 40B]
          Length = 581

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GAT+VT     + L  T
Sbjct: 419 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVT 477

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 478 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 537

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 538 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 579


>gi|1246517|emb|CAA60131.1| pulD-like [Escherichia coli]
          Length = 596

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 25/161 (15%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301
           ++  +L AL  ++    LA P++  +    A+F             T+ G +++ TV   
Sbjct: 360 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 419

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358
           T          G+ L   P +     + L I+ EVS   +  +        ++  R    
Sbjct: 420 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 470

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            + + +  T+V+ GLL   I+  +  +PLL  IP+LG LFR
Sbjct: 471 AMLVGNCETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFR 511


>gi|320174026|gb|EFW49196.1| General secretion pathway protein D [Shigella dysenteriae CDC
           74-1112]
          Length = 164

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 7/112 (6%)

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           +L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IVL GL+
Sbjct: 1   MLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIVLGGLM 58

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            D   +    +PLL  IP++G LF+++   +E+  + +      ++P  +RD
Sbjct: 59  DDQAGESVAKVPLLGDIPLIGKLFKSTADKKEKRNLMV-----FIRPTILRD 105


>gi|332711134|ref|ZP_08431068.1| type II secretory pathway, component HofQ [Lyngbya majuscula 3L]
 gi|332350116|gb|EGJ29722.1| type II secretory pathway, component HofQ [Lyngbya majuscula 3L]
          Length = 810

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 85/199 (42%), Gaps = 40/199 (20%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH---DY 312
           F   L A   ++  + L +PTL    GQ AS       L + V      TSVTT    D 
Sbjct: 599 FLLTLQAQITSSNAKILTDPTLVIQEGQEASV-----KLVQEV-----LTSVTTDIDLDG 648

Query: 313 GVVLHFTPTVLSPGRIGLRIQ----------TEVSEPVIGV----------NAGDMPSYR 352
           GV       V+    + L +           T  + PVI            NA +  ++ 
Sbjct: 649 GVATRTITPVIEEAGLTLTVNVDRIDDNGFITLSTSPVITAPSGTQEFNSDNAQNEITFL 708

Query: 353 VRKADTT--VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            R+  ++  V L  G T++L+G+++D  +     +P+L  IP+LGALFR++    + +E+
Sbjct: 709 SRRELSSGLVRLRDGQTLILSGIIQDTDRTTVSKVPILGDIPLLGALFRSTNKQNQRSEV 768

Query: 411 FIAATPFLVKPVAMRDLSR 429
            I     LV P  M D  R
Sbjct: 769 II-----LVTPQIMDDTDR 782


>gi|301064238|ref|ZP_07204681.1| type IV pilus secretin PilQ [delta proteobacterium NaphS2]
 gi|300441683|gb|EFK06005.1| type IV pilus secretin PilQ [delta proteobacterium NaphS2]
          Length = 756

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 347 DMPSYRVRKADTT-VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           D P  R  K  T+ + + +G T+V+ G+ +        GIP L  IP+LG LF+  R   
Sbjct: 675 DSPPGRTEKKITSNLIVKTGDTVVIGGIYQKSEISSDSGIPWLKDIPLLGYLFKAERTQE 734

Query: 406 EETEIFIAATPFLVKPV 422
            +TE+ I  TP +VK V
Sbjct: 735 SKTELLIFLTPTVVKSV 751


>gi|167573316|ref|ZP_02366190.1| Type III secretion system protein [Burkholderia oklahomensis C6786]
          Length = 302

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 45  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 93

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +     A  +    YG 
Sbjct: 94  KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGER--AVQLEHVTYGT 151

Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +     ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 152 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGRIVIDNNTMPLVNRTEINTVARVPHEM 211

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 212 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 265


>gi|315178926|gb|ADT85840.1| fimbrial assembly protein [Vibrio furnissii NCTC 11218]
          Length = 557

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A++R +    ++ P L   + Q A    G +  Y   SSS+GATSV      + L  T
Sbjct: 395 LSAMQRESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVT 453

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 454 PQITPDNRLVLDLSVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHS 513

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +    + +PLL  +P+LGALFR S     ++E+ I  TP +V
Sbjct: 514 VTSSVDKVPLLGDLPLLGALFRRSYEQMGKSELLIFVTPKVV 555


>gi|149175013|ref|ZP_01853636.1| bacterial type II/III secretion system protein [Planctomyces maris
           DSM 8797]
 gi|148845991|gb|EDL60331.1| bacterial type II/III secretion system protein [Planctomyces maris
           DSM 8797]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +  +SGQSA+  SGG++    + +    TSV    +GV     P +L  GRI L    
Sbjct: 173 PEIVTVSGQSATSMSGGKYPV-LIPAGDNQTSVEWKRFGVFCKVEPRLLDNGRIQLEFSP 231

Query: 335 EVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           E+S+      + VN   +P   VR+  T  E+  G T+V+
Sbjct: 232 EISQRDYANAVKVNGLTIPGLTVRRIYTQAEMNLGETLVV 271


>gi|45751673|emb|CAF21320.1| InvG protein [Burkholderia thailandensis]
          Length = 270

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 50  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 98

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 99  KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 156

Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +     ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 157 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 216

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ +P++G LFR    +R E  + +    FL++P  +R
Sbjct: 217 SLLIGGNTRDDVTRRTFRIPGLASLPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 270


>gi|238785761|ref|ZP_04629734.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia bercovieri ATCC 43970]
 gi|238713344|gb|EEQ05383.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia bercovieri ATCC 43970]
          Length = 504

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 9/213 (4%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-DR 253
           Q+ + VTI +V    + Q+G   S + S  G   SF +  G     +        V+ D 
Sbjct: 267 QIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSGSGSSGTGKNSADGFSTVIGDT 326

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +F   L+AL++ +  R L++P++  ++   A          K            T   G
Sbjct: 327 SNFMVRLNALQKNSRARVLSQPSVVTLNNIQAVLDKNVTFYTKLQGDKVAKLESITS--G 384

Query: 314 VVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
            +L  TP ++         + L IQ    +  I  N+  +P  +     T   L  G ++
Sbjct: 385 SLLRVTPRMIDADGEKEVLLNLNIQDGQQQAPIS-NSEPLPEIQNSDISTQATLRVGQSL 443

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +L G ++D   + +  IPLL  IP+LG LFR++
Sbjct: 444 LLGGFIQDKQIESQNKIPLLGDIPLLGGLFRST 476


>gi|320107862|ref|YP_004183452.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
 gi|319926383|gb|ADV83458.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
          Length = 810

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 9/176 (5%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGATSVTTHDY 312
           ++AL   +  R L  P + A  GQ A+   G +             S++T  T  T  D 
Sbjct: 416 VNALLSDSDTRVLQNPRVRASDGQQATLKIGSKIPVATGSTTSTLTSTATATTQFTYVDV 475

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           GV +  TPTV   G++ L+++ EVS       ++    P    R     ++L  G   +L
Sbjct: 476 GVNIDMTPTVHLDGQVSLKMKIEVSSQTGTTTISGVSEPIISQRVVQQVIQLKDGEPSIL 535

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           AGLL+    +   G P L +IP L   F +    +   EI     P +V+   + D
Sbjct: 536 AGLLQQSDTKSVSGTPGLGEIPFLKYFFSSQDKKQSSDEIVFLLIPHIVRESPLTD 591


>gi|260770882|ref|ZP_05879811.1| type IV pilus biogenesis protein PilQ [Vibrio furnissii CIP 102972]
 gi|260614119|gb|EEX39309.1| type IV pilus biogenesis protein PilQ [Vibrio furnissii CIP 102972]
          Length = 574

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A++R +    ++ P L   + Q A    G +  Y   SSS+GATSV      + L  T
Sbjct: 412 LSAMQRESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVT 470

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 471 PQITPDNRLVLDLSVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHS 530

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +    + +PLL  +P+LGALFR S     ++E+ I  TP +V
Sbjct: 531 VTSSVDKVPLLGDLPLLGALFRRSYEQMGKSELLIFVTPKVV 572


>gi|46398274|gb|AAS91828.1| AscC [Aeromonas hydrophila]
          Length = 618

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 33/248 (13%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI---TGS-------SSGPSKSF--AADFGGKFVSEG 242
           ++ + ++I ++  + L Q+G    +   TGS       ++G  K    AA  G    S+G
Sbjct: 287 RIEVALSIIDINAEDLSQLGVDWRVGIRTGSNQQVIIKTTGDRKGIEGAAALGSLVDSKG 346

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D+    +L R +       LE     + ++ PTL       A       +  K      
Sbjct: 347 LDY----LLARVNL------LENEGNAQVISRPTLLTQENTQAVIDHSETYYVKISGERV 396

Query: 303 GATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADT 358
                 T  YG +L  TP V+       I L +  E  S+   G  A  +P+ +    DT
Sbjct: 397 AELQGIT--YGTMLRMTPRVVQMWDKPEISLSLHIEDGSQKPNGTGADGLPTIQRTVVDT 454

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +  G ++++ G+ +D++ +    +P L  IP LGALFR+     ++T+   +   F+
Sbjct: 455 IARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRS-----KDTQTRRSVRLFI 509

Query: 419 VKPVAMRD 426
           ++P  + D
Sbjct: 510 IEPRLIDD 517


>gi|325275755|ref|ZP_08141633.1| type II and III secretion system protein [Pseudomonas sp. TJI-51]
 gi|324099115|gb|EGB97083.1| type II and III secretion system protein [Pseudomonas sp. TJI-51]
          Length = 76

 Score = 46.6 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           + +PILGA FRNS   R+ETE+ +  TP LV+P+A+
Sbjct: 3   APLPILGAFFRNSTMRRDETELLMIVTPHLVQPLAV 38


>gi|307826274|ref|ZP_07656482.1| type IV pilus secretin PilQ [Methylobacter tundripaludum SV96]
 gi|307732679|gb|EFO03548.1| type IV pilus secretin PilQ [Methylobacter tundripaludum SV96]
          Length = 785

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 11/167 (6%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+       ++ P +  +   +A    G Q    T  ++    + T  D  + L+ T
Sbjct: 618 LQALQIEGKGEIVSNPRVMTMDRCTAVMMQGVQIPVTTPGTANTPPTTTYIDAVLKLNAT 677

Query: 320 PTVLSPGRIGLRI------QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           P +   G + + +          S PV G      P    R+  T+V +  G T+VL G+
Sbjct: 678 PQITPSGSVIMNLLITKDNANTTSNPVSG-----NPGIDKREIKTSVLVEDGETVVLGGV 732

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +      K  IP  + +P +G LF NS  N+ + E+ I  TP ++K
Sbjct: 733 YEGAESYGKNKIPFFADLPGIGFLFTNSTTNKTKKELLIFVTPKIMK 779


>gi|254229573|ref|ZP_04922986.1| Type II secretory pathway, component PulD [Vibrio sp. Ex25]
 gi|151937946|gb|EDN56791.1| Type II secretory pathway, component PulD [Vibrio sp. Ex25]
          Length = 458

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 17/174 (9%)

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           EGGDF+            ++ A+ +    + L+ P +  +  +    T G    + T S 
Sbjct: 289 EGGDFNA-----------LIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSE 337

Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
            T        +   D GV L   P V+    + L+I  +         A D+ +   R  
Sbjct: 338 VTDGGNRVQQIERKDVGVSLEVVPHVIG-DHVVLQIMQKSDSVTDSSIASDIIT-NTRTL 395

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            T V++    TI L GL+  + +    G+P+L  +P+LGALFR+ + N  + E+
Sbjct: 396 QTVVKVKDRQTISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKEL 449


>gi|299138919|ref|ZP_07032096.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298599073|gb|EFI55234.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 901

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 12/169 (7%)

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----------TSVTTHDYGVVLHFT 319
           R L  P + A  GQ ++   G +    T S ++G           T  T  D GV +  T
Sbjct: 511 RILQNPRIRATDGQHSTLKIGEKIPVATGSYNSGVSTGLANIGVQTQFTYLDVGVNIDIT 570

Query: 320 PTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           PTV     + L+++ E+S     + ++    P    R A+  ++L  G   +LAGLL+ +
Sbjct: 571 PTVHYDHEVSLKMKVEISASNGNVTISGVTEPIITQRVAEQVIQLKDGEPSILAGLLQQE 630

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
             +   G P L ++P     F +    ++  EI     P +V+   + D
Sbjct: 631 DTKTINGTPGLGELPFFKYFFSSQDKVQQSDEIVFLIIPHIVRESILTD 679


>gi|241762850|ref|ZP_04760913.1| type IV pilus secretin PilQ [Acidovorax delafieldii 2AN]
 gi|241368025|gb|EER62230.1| type IV pilus secretin PilQ [Acidovorax delafieldii 2AN]
          Length = 712

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 75/160 (46%), Gaps = 3/160 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E     R ++ P +       A    G ++ Y ++++  GAT++      + L  T
Sbjct: 549 LSAMEADGKGRIVSSPRIITADQTKALIEQGTEYPY-SITAPNGATTLAFKKAVLKLEVT 607

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G I L +  ++++   G       +   +   T + + +GGT+V+ G+ + +  
Sbjct: 608 PQITPEGNIILDL--DINKDSRGETTTQGVAIDTKHIKTQILIENGGTVVIGGIFEMEDT 665

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  IP+L  +P++G LF++      + E+ +  TP ++
Sbjct: 666 NQENKIPVLGDVPVVGNLFKSRTKESTKREMLVFITPKVI 705


>gi|22299887|ref|NP_683134.1| putative general secretion pathway protein D [Thermosynechococcus
           elongatus BP-1]
 gi|22296072|dbj|BAC09896.1| tlr2344 [Thermosynechococcus elongatus BP-1]
          Length = 719

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLA 371
           + L  +P V +P      +   V  P IG       M S R+R  D       G T++LA
Sbjct: 584 ITLQLSPEVSAPTDTYDVVFPGVDNPSIGTLLAQRRMESGRIRLRD-------GQTLMLA 636

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+++D  +     +P+L  IP+LG LFR    +R+  E+ +  TP ++
Sbjct: 637 GIIQDQDRSTVTKVPILGDIPLLGRLFRRESNSRQRNELVVMVTPKII 684


>gi|238023720|ref|YP_002907952.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia glumae BGR1]
 gi|237878385|gb|ACR30717.1| Type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia glumae BGR1]
          Length = 605

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 11/179 (6%)

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           +V G   R+   +V +AL+  +  +  A P +  +    A+  +  +  Y  V   T A 
Sbjct: 429 AVVGGAGRYLLASV-NALQSNSKAKIDATPLVATLDNVEATMDNTTK-FYVRVQGYTSAD 486

Query: 306 --SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV---SEPVIGVNAGDMPSYRVRKADTTV 360
             SV+T   GV L   P ++   R G RI+  V   +  +      ++P     + +T  
Sbjct: 487 LYSVST---GVSLRVLPLIVH-DRDGTRIKLSVHIENGSLTQQQVDNIPVITTSQINTQA 542

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +  G ++++AG   D       G+P LSKIP+LGALFRN+       E     TP ++
Sbjct: 543 FVGEGESLLIAGFTTDKTANGVTGVPFLSKIPLLGALFRNNSDQHNHNETVFLLTPRII 601


>gi|269968410|ref|ZP_06182426.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269826958|gb|EEZ81276.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 450

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 17/174 (9%)

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           EGGDF+            ++ A+ +    + L+ P +  +  +    T G    + T S 
Sbjct: 281 EGGDFNA-----------LIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSE 329

Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
            T        +   D GV L   P V+    + L+I  +         A D+ +   R  
Sbjct: 330 VTDGGNRVQQIERKDVGVSLEVVPHVIG-DHVVLQIMQKSDSVTDSSIASDIIT-NTRTL 387

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            T V++    TI L GL+  + +    G+P+L  +P+LGALFR+ + N  + E+
Sbjct: 388 QTVVKVKDRQTISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKEL 441


>gi|325107410|ref|YP_004268478.1| type II and III secretion system protein [Planctomyces brasiliensis
            DSM 5305]
 gi|324967678|gb|ADY58456.1| type II and III secretion system protein [Planctomyces brasiliensis
            DSM 5305]
          Length = 1546

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 10/67 (14%)

Query: 358  TTVELPSGGTIVLAGLLKDDIQQLKE-----GIPLLSKIPILGALFRNSRFNREETEIFI 412
            T V +P GGT++L G     +++L+E     G+P+L+KIP +  LF+N+   RE   + +
Sbjct: 1471 TVVSVPDGGTVLLGG-----VKRLREGRNMAGVPILNKIPYVSRLFKNTGVGRETESLML 1525

Query: 413  AATPFLV 419
              TP ++
Sbjct: 1526 MVTPRII 1532


>gi|257464993|ref|ZP_05629364.1| type II secretory pathway, component HofQ [Actinobacillus minor
           202]
 gi|257450653|gb|EEV24696.1| type II secretory pathway, component HofQ [Actinobacillus minor
           202]
          Length = 442

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 4/165 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+  ++  +A P L   + + AS   G +  Y      +    V   +  + L  T
Sbjct: 260 LSALEQENSVEIIASPRLLTTNKKLASIKQGTEIPYAIYDRKSETYDVEFKEAVLGLQVT 319

Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLK 375
           P +    +I + +   Q    + V+   +G+   S   ++ +T V    G TIVL G+ +
Sbjct: 320 PHISKDNQILMDLVVTQNSQGQSVVSSTSGNAAVSIDKQELNTQVFAKHGETIVLGGIFQ 379

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               +  + +P+L  IP L  LF   +    + E+ I  TP++++
Sbjct: 380 HLKTKDSDRVPVLGSIPFLKHLFSYQKDQISKRELVIFVTPYIIQ 424


>gi|153951393|ref|YP_001397557.1| type II and III secretion system protein [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152938839|gb|ABS43580.1| bacterial type II and III secretion system protein [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 391

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 14/221 (6%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+  K+TI E   D LK+ G + S +     P K F        +      ++    D+ 
Sbjct: 168 QLKFKITILETNLDFLKEKGSKLS-SLFQGNPIKDFHLFVNLITIPYNSQNNIVSS-DKK 225

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHD 311
            F + L+ LE     R ++ P L A S     F+S     +   S+S   T V   T++D
Sbjct: 226 GFYSTLNFLENQRITRIVSNPFLLARSNTEVFFSSVQNIPFLKNSTSVSDTRVSQNTSYD 285

Query: 312 Y---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           Y   G+ +   P ++   ++   +   V + +   N   + S +  K+  T  L  G  +
Sbjct: 286 YRDVGLQVTLKPVIIG-DKVDFSLHLIVEDLLSNSNLTPVTSKKELKSSYT--LKKGELL 342

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           VL+G+ K        GIP L  I  LG LF   +  R+ET 
Sbjct: 343 VLSGINKVTNTNYTSGIPYLKDIWFLGNLF---KIQRKETN 380


>gi|83717183|ref|YP_439025.1| type III secretion system protein BsaO [Burkholderia thailandensis
           E264]
 gi|83651008|gb|ABC35072.1| type III secretion system protein BsaO [Burkholderia thailandensis
           E264]
          Length = 619

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 362 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 410

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 411 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 468

Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +     ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 469 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 528

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ +P++G LFR    +R E  + +    FL++P  +R
Sbjct: 529 SLLIGGNTRDDVTRRTFRIPGLASLPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 582


>gi|262273424|ref|ZP_06051238.1| type IV pilus biogenesis protein PilQ [Grimontia hollisae CIP
           101886]
 gi|262222402|gb|EEY73713.1| type IV pilus biogenesis protein PilQ [Grimontia hollisae CIP
           101886]
          Length = 578

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGL 373
           L  TP +    ++ L +Q    +P   V AG  +  +   ++  T V +  G T+VL G+
Sbjct: 471 LSVTPQITPDNKLVLDLQVTQDKPAGTVKAGTGEAMAINTQRIGTQVLVNDGETVVLGGI 530

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            + ++ +  + IPLL  IP LG LFR +     + E+ I  TP
Sbjct: 531 YQHEMMEGVDKIPLLGDIPGLGQLFRRNYETTGKRELLIFVTP 573


>gi|172036496|ref|YP_001802997.1| general secretion pathway protein D [Cyanothece sp. ATCC 51142]
 gi|171697950|gb|ACB50931.1| general secretion pathway protein D [Cyanothece sp. ATCC 51142]
          Length = 778

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           + L  G T++L+G++ +  Q     +PLL  IP+LGALFR+     + TE+ +  TP
Sbjct: 688 IRLRDGQTLILSGIISESDQSTTSKVPLLGDIPLLGALFRSQTDTSQRTEVIVLLTP 744


>gi|254302334|ref|ZP_04969692.1| possible outer bacterial membrane secretin family protein
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148322526|gb|EDK87776.1| possible outer bacterial membrane secretin family protein
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 515

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 23/240 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           QV +   I ++  ++ +++GF      +  S    S  A   GK     G  S   ++ +
Sbjct: 269 QVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAIILGK-AGLNGVGSTVNIVRQ 327

Query: 254 FS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           F+       T ++ LE    +   + PTL   SG+   F    + +    S         
Sbjct: 328 FNNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKSHRDDKKDRY 387

Query: 309 TH----DYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV 353
           +     + G+++   P +     I L I  E+S+         +  +N+G   S    +V
Sbjct: 388 SEPVFKEAGLIMKVKPIIKDNDYIILEISLELSDFKFKRNVLNLKDINSGTYNSEGGSKV 447

Query: 354 -RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++I
Sbjct: 448 GRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 507


>gi|126659012|ref|ZP_01730153.1| general secretion pathway protein D [Cyanothece sp. CCY0110]
 gi|126619669|gb|EAZ90397.1| general secretion pathway protein D [Cyanothece sp. CCY0110]
          Length = 743

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           + L  G T++L+G++ +  Q     +PLL  IP+LGALFR+     + TE+ +  TP
Sbjct: 653 IRLRDGQTLILSGIISESDQSTTSKVPLLGDIPLLGALFRSQTDTSQRTEVIVLLTP 709


>gi|167566206|ref|ZP_02359122.1| Type III secretion system protein [Burkholderia oklahomensis EO147]
          Length = 315

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 58  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 106

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +     A  +    YG 
Sbjct: 107 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGER--AVQLERVTYGT 164

Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +     ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 165 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGRIVIDNNTMPLVNRTEINTVARVPHEM 224

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 225 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 278


>gi|146298381|ref|YP_001192972.1| type II and III secretion system protein [Flavobacterium johnsoniae
           UW101]
 gi|146152799|gb|ABQ03653.1| GspD-like type II secretion system secretin protein [Flavobacterium
           johnsoniae UW101]
          Length = 634

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 10/175 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-----KTVSSSTG-----A 304
           +F   L  LE  + ++  + P +  ISG  A  + G    Y     + ++S+ G     +
Sbjct: 459 AFYLNLKLLENNSIVKVESTPKIATISGHEAKLSIGETSYYFEQSNRLINSNIGNDILNS 518

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
            +  + D  + L   P V     + L I  E S  +        P    +K ++ V + +
Sbjct: 519 GTWKSTDANLSLSIKPYVSIDENVTLTIVVEKSSFLGRAGETAPPGKATQKFESLVRVKN 578

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G  I+L GL +   +    G PLLS+IPI+   F + +  +  +++ I   P +V
Sbjct: 579 GEMILLGGLDELKKEDSGSGTPLLSRIPIIKWFFSSRKKGKNNSKLHIFIKPTVV 633


>gi|257142133|ref|ZP_05590395.1| type III secretion system protein BsaO [Burkholderia thailandensis
           E264]
          Length = 600

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 343 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 391

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 392 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 449

Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +     ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 450 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 509

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ +P++G LFR    +R E  + +    FL++P  +R
Sbjct: 510 SLLIGGNTRDDVTRRTFRIPGLASLPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 563


>gi|148979183|ref|ZP_01815362.1| fimbrial assembly protein [Vibrionales bacterium SWAT-3]
 gi|145961941|gb|EDK27231.1| fimbrial assembly protein [Vibrionales bacterium SWAT-3]
          Length = 564

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GATSV      + L  T
Sbjct: 402 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVT 460

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 461 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 520

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +    + +PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 521 VSSTVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 562


>gi|94496757|ref|ZP_01303332.1| putative type III secretion protein YscC [Sphingomonas sp. SKA58]
 gi|94423770|gb|EAT08796.1| putative type III secretion protein YscC [Sphingomonas sp. SKA58]
          Length = 599

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 97/243 (39%), Gaps = 30/243 (12%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----------- 244
           V L+ TI ++  D L+++G            S  + A FGG  V   G+           
Sbjct: 334 VELEATIIDINVDRLRELGINWRFR------SGDWGALFGGDIVRRTGNPLTDSLNTGSV 387

Query: 245 ---FSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
               S+ G++     F   + ALE   A + ++ P L  +S   A F    +  Y  V+ 
Sbjct: 388 NRGLSLSGIIGANNEFIARISALEEKGAAKVVSRPQLVTLSNVEAVFDRT-RTFYVRVAG 446

Query: 301 STGATSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADT 358
                 +     G VL   P VL   G+  +R+   V +  +     D +P       +T
Sbjct: 447 DR-QVDLFNVTAGTVLRVNPHVLVDNGQPRIRMVVNVEDGALLDGTVDRIPVVERASVNT 505

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +  G +++L GL  +     +  IP+L +IP+LG LF++    R+  E       FL
Sbjct: 506 QALIAEGESLLLGGLTVNSDMDAETAIPVLGQIPVLGELFKSRSKRRQHVERL-----FL 560

Query: 419 VKP 421
           + P
Sbjct: 561 ISP 563


>gi|237753431|ref|ZP_04583911.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375698|gb|EEO25789.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 487

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 34/220 (15%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           SITG S G S      +G    S G            S   ++  L+    +++++ P +
Sbjct: 268 SITGGSKGSS----VQYGLNIFSAG-----------LSLNRIVEFLKGYGEVQSISNPKV 312

Query: 278 TAISGQSASFTSGG------QHLYKTVSSSTGATSVTTHDY-----GVVLHFTPTVLSPG 326
             ++ Q A  + G        ++Y+  ++ T  T+ T ++Y     GV+L  TP V    
Sbjct: 313 LTLNNQPAMISVGDILRYKKSNIYQNTNAQTTLTN-TNNEYPSIFAGVLLDITPLVFEDS 371

Query: 327 RIGLRIQTEVS-----EPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            I L++   ++     +  I  +A D P +    +  + V++ +   ++L GL+  +  +
Sbjct: 372 -IMLKVNPSITKTKDMQTKIAASAFDAPPNLTTNQLSSIVKVKNNQKVILGGLIAQNTAK 430

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               IPLL  IP++  LF  +  +    EI    TP +++
Sbjct: 431 ESNKIPLLGDIPLIKPLFSYTHDSISTEEIVFIITPRIIE 470


>gi|226227920|ref|YP_002762026.1| hypothetical protein GAU_2514 [Gemmatimonas aurantiaca T-27]
 gi|226091111|dbj|BAH39556.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 735

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 86/197 (43%), Gaps = 30/197 (15%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------ 304
           L R+     L+AL+ ++     +EP++T ++ +SA    G +   + + +S G       
Sbjct: 532 LGRYQLTAFLNALQTSSLADVQSEPSITILNNRSAEIFVGQEIPIRVIDASAGGQGGGGG 591

Query: 305 ---------------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342
                                 +V+  + G+ L  TP + +   + L I+ E S   I  
Sbjct: 592 GGGGGGGGAAGQPNAAAFFPRATVSKEEAGIKLSVTPQITNNKMVMLNIKAENSSAEIAS 651

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            + G +  +  ++A++ V +  G   V+ GL   +  + + GIP+L  +P +G +F  + 
Sbjct: 652 TDVGVI--FNRQRAESQVLVADGEAAVIGGLTVTETTRFRSGIPVLMNLPFVGRIFSQNT 709

Query: 403 FNREETEIFIAATPFLV 419
            N  + ++ I  TP ++
Sbjct: 710 KNETKRDLLILVTPHIL 726


>gi|37522007|ref|NP_925384.1| hypothetical protein glr2438 [Gloeobacter violaceus PCC 7421]
 gi|35213006|dbj|BAC90379.1| glr2438 [Gloeobacter violaceus PCC 7421]
          Length = 493

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T V+ G++++  +QL + +PLL  +P+LGALFR      E  E+ +  TP ++
Sbjct: 423 LRLRDGETFVIGGVIREIDRQLVQKMPLLGDLPVLGALFRFQSNQHERREVALMVTPHIL 482

Query: 420 K 420
           K
Sbjct: 483 K 483


>gi|322515010|ref|ZP_08068020.1| type IV pilus secretin PilQ [Actinobacillus ureae ATCC 25976]
 gi|322118999|gb|EFX91171.1| type IV pilus secretin PilQ [Actinobacillus ureae ATCC 25976]
          Length = 431

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 1/162 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+   +  +A P L   + + AS   G +  Y   +      ++   +  + L  T
Sbjct: 253 LTALEQENNVEIIASPRLLTTNKKPASIKQGTEIPYVLYNRKDEVKNIEFKEAVLGLQVT 312

Query: 320 PTVLSPGRIGLR-IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P + +  +I L  + T+ S          + +   ++ +T V    G TIVL G+ +   
Sbjct: 313 PHISNDKQILLDLVVTQNSPNSTSSTVHGLVTIDKQELNTQVFAQHGETIVLGGIFQHLT 372

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + ++ +P+L  IP++  LF +S     + E+ I  TP++VK
Sbjct: 373 AKGEDRVPILGSIPVIKKLFSHSSDKISKRELVIFVTPYIVK 414


>gi|167577430|ref|ZP_02370304.1| type III secretion system protein BsaO [Burkholderia thailandensis
           TXDOH]
          Length = 339

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 82  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 130

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 131 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 188

Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +     ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 189 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 248

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 249 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 302


>gi|318040699|ref|ZP_07972655.1| general secretory pathway protein D [Synechococcus sp. CB0101]
          Length = 167

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V +  G T++L G++ D+ + +    P+L  +P++G  FR S  +R ++E+ I  TP +V
Sbjct: 81  VRVRDGQTLILTGVISDEDRSVVTKWPILGDLPLVGQFFRRSSGDRRKSELVIMVTPRIV 140

Query: 420 KPVAMRDLSRPDDHYSVE---DDAKAFFFNRV 448
           K     D    D  Y  +    DA+ F ++ V
Sbjct: 141 K-----DDQGGDYGYGYQPSTQDARGFVYSGV 167


>gi|45751689|emb|CAF21328.1| InvG protein [Burkholderia thailandensis]
          Length = 277

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 52  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 100

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 101 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 158

Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +     ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 159 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 218

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ +P++G LFR    +R E  + +    FL++P  +R
Sbjct: 219 SLLIGGNTRDDVTRRTFRIPGLASLPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 272


>gi|163803103|ref|ZP_02196987.1| DNA-binding transcriptional regulator OxyR [Vibrio sp. AND4]
 gi|159173095|gb|EDP57927.1| DNA-binding transcriptional regulator OxyR [Vibrio sp. AND4]
          Length = 559

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GATSV      + L  T
Sbjct: 397 LSALQQESKAEIVSSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVT 455

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 456 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHS 515

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR +  N  ++E+ I  TP +V
Sbjct: 516 ITNSVDKVPLLGDLPLLGALFRRTYENVGKSELLIFVTPKVV 557


>gi|330815292|ref|YP_004358997.1| Type II/III secretion system protein [Burkholderia gladioli BSR3]
 gi|327367685|gb|AEA59041.1| Type II/III secretion system protein [Burkholderia gladioli BSR3]
          Length = 658

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 10/130 (7%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  L        G + V      + L   P +   G + L +  ++++  +G      P+
Sbjct: 473 GTELPYQAKVGRGVSGVQFRRATLKLEVEPQITPDGHVVLDL--DIAKDSVGEQTDAGPA 530

Query: 351 YRVRKADTTVELPSGGTIVLAGLLK----DDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
              +   T VE+ +GGT+ + G+ +    DD+ +    +P+L KIP+LGALFR+     +
Sbjct: 531 IHTKHVRTRVEVENGGTVSIGGIYERNEWDDVTR----VPVLGKIPVLGALFRHKARREQ 586

Query: 407 ETEIFIAATP 416
            +E+ +  TP
Sbjct: 587 SSELVVYITP 596


>gi|45751693|emb|CAF21330.1| InvG protein [Burkholderia thailandensis ATCC 700388]
          Length = 282

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 51  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 99

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 100 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 157

Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +     ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 158 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 217

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ +P++G LFR    +R E  + +    FL++P  +R
Sbjct: 218 SLLIGGNTRDDVTRRTFRIPGLASLPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 271


>gi|297622120|ref|YP_003710257.1| putative general secretion pathway protein D [Waddlia chondrophila
           WSU 86-1044]
 gi|297377421|gb|ADI39251.1| putative general secretion pathway protein D [Waddlia chondrophila
           WSU 86-1044]
          Length = 865

 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P    R+    V +P G  +++ GL +     + + IP L ++P LG LF  ++   EET
Sbjct: 729 PQVNRRQIINQVNIPDGQAVIIGGLQRKQGSDMCDKIPFLGELPGLGKLFSTTQLTDEET 788

Query: 409 EIFIAATPFLV 419
           E+ I  TP ++
Sbjct: 789 ELVIFMTPKII 799


>gi|104783254|ref|YP_609752.1| type II secretion system protein D [Pseudomonas entomophila L48]
 gi|95112241|emb|CAK16968.1| putative type II secretion system protein D [Pseudomonas
           entomophila L48]
          Length = 651

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 14/147 (9%)

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ   F +G      T +++    ++   + GV L   P V     + L I  EVS    
Sbjct: 469 GQEVPFVTGS----VTQNNANPYQTIERKEVGVKLRIKPQVNVDNSVRLDIVQEVSSIAE 524

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN- 400
              A D+ + + R+  T V +   G ++L GL+ D+     + +PLL  IP LG LFR+ 
Sbjct: 525 SRAASDVITNK-REIKTKVMVEDNGLVILGGLISDERSTSNQRVPLLGDIPGLGRLFRSD 583

Query: 401 -SRFNREETEIFIAATPFLVKPVAMRD 426
            S+  ++   +FI       +P  +RD
Sbjct: 584 ASKGTKQNLMVFI-------RPRILRD 603


>gi|123443753|ref|YP_001007724.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|27529236|emb|CAC83029.1| Yts1D protein [Yersinia enterocolitica (type 0:8)]
 gi|122090714|emb|CAL13590.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 658

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 107/255 (41%), Gaps = 21/255 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--HSITGSSSGPSKSFAADFGGKFV 239
           ++V+N L+I    QV ++  I EV+      +G Q  +   G S+ P    +A       
Sbjct: 348 EQVINQLDIR-RAQVLVEAIIVEVQDSDALNLGVQWFNRNGGGSNFPENGASA---SSIT 403

Query: 240 SEGGDFSVKGVLD------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ- 292
           S     S+KG+        R ++  +  AL   +    LA P++  +    A F+ G + 
Sbjct: 404 SNDMGSSLKGITGLATGFYRGNWSGLFTALRTNSQNDILATPSIVTLDNMEAEFSVGQEV 463

Query: 293 HLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAG 346
            +     ++TG     T D    G+ L   P +     + L I+ EVS   E   G   G
Sbjct: 464 PVLSGSQTTTGDNIFRTVDRKSVGIKLKVKPQINKGDSVLLEIEQEVSSVAEKAPG-GTG 522

Query: 347 DM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           D+  ++  R     V + S   +V+ GLL      +   +PLL  IP +G LFR++    
Sbjct: 523 DLGATFNTRMVKNAVMVGSNNIVVVGGLLDSTSHDVTSKVPLLGDIPGIGFLFRSTSQKM 582

Query: 406 EETEIFIAATPFLVK 420
            +  + +   P +++
Sbjct: 583 VKRNLMLFIRPTIIR 597


>gi|45751671|emb|CAF21319.1| InvG protein [Burkholderia thailandensis]
          Length = 285

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 51  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 99

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 100 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 157

Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +     ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 158 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 217

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ +P++G LFR    +R E  + +    FL++P  +R
Sbjct: 218 SLLIGGNTRDDVTRRTFRIPGLASLPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 271


>gi|94987602|ref|YP_595535.1| putative type III secretion protein YscC [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731851|emb|CAJ55214.1| putative type III secretion protein YscC [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 583

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 103/248 (41%), Gaps = 27/248 (10%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----------KFVSEGGDF 245
           V +   I ++  +  + +GF  ++   SS  S +   DF            K   EGG  
Sbjct: 289 VEIHAAIVDIDSEFKRDLGF--TLQQGSSKKSMTMGGDFSTTQQSLPLEITKGTVEGGGL 346

Query: 246 SVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           +   +  +    F   + ALE     R L +P++  +    A+  +   +  +     T 
Sbjct: 347 TYSTIYSKGVEFFLARVQALETEGEARVLGKPSVLTVDNIQATLENTSTYYIQVQGYQT- 405

Query: 304 ATSVTTHDYGVVLHFTPTVL--SPGRIGLRIQTEV--------SEPVIGVNAGDMPSYRV 353
              +   + G VL  TP ++  + G   +++   +        ++P +G N   +P  + 
Sbjct: 406 -VDLFKVESGTVLRVTPHIIYNNDGTKSIKLVVAIEDNQNDNSTDPTVGSNVV-LPPIKQ 463

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            + +T   + +G ++++ G   +      +GIP+L  IPI+G LF+ +    ++ E  I 
Sbjct: 464 TRINTQGVVNTGQSLLIGGYYYEQQGVNDKGIPILKDIPIIGYLFKTNTKTSKKMERLIL 523

Query: 414 ATPFLVKP 421
            TP ++ P
Sbjct: 524 ITPRIIMP 531


>gi|312963506|ref|ZP_07777988.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
 gi|311282312|gb|EFQ60911.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
          Length = 641

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 119/252 (47%), Gaps = 20/252 (7%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGK 237
           S+ +K++  ++IA + +VT+ + + EV  +    +G Q+  + G S G   +  A   G 
Sbjct: 313 SAVEKLVEAIDIA-QSEVTIDIQVLEVSLNDELNLGIQYPESVGLSVGNLANVPAGLAGI 371

Query: 238 FVSEGGDFSVKGV------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            +S     +++G+      LD  S    ++ L+R+    TLA P +   + + A+   G 
Sbjct: 372 PLS-----ALRGINGDNILLDAGSTSARINMLQRSGNTVTLANPRVRVRNREEAAVNIGD 426

Query: 292 Q--HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347
           +   +  T ++    +SVT  D G+ +   P +     + L +  E+S     + A +  
Sbjct: 427 KVPMVTTTTANDITTSSVTYQDVGLQITVKPNISLSDEVNLELNVEMSHITKRIPASENV 486

Query: 348 MPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFN 404
             ++ +  R   T +   +  T +++GL++        G+P LS+IP +G  LF  ++  
Sbjct: 487 QATFELGSRSTKTLLTARNNETQIVSGLIRTADVDEGAGLPWLSQIPWIGKKLFGTNQST 546

Query: 405 REETEIFIAATP 416
           +++TEI +  TP
Sbjct: 547 QQKTEIILLLTP 558


>gi|289667997|ref|ZP_06489072.1| fimbrial assembly protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 631

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAG 372
           L  TPT+ +  R+ L +  +  E    ++    G +P    R+ +T V +  G T+V+ G
Sbjct: 518 LKVTPTITNDNRVFLNMNVKKDEVARFIDLPLYGTVPEINRREVNTAVLVGDGETVVIGG 577

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 578 VYEFTDRESIAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 625


>gi|242310207|ref|ZP_04809362.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523504|gb|EEQ63370.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 502

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 98/234 (41%), Gaps = 33/234 (14%)

Query: 226 PSKSFAADFGG----------KFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRT 271
           P+ S  A FGG            V + G  +++  ++ FS       ++  L+    + +
Sbjct: 259 PTFSEGASFGGGGEVGNVSGINIVGQNGSNALQYGINIFSQGLSLNRIIEFLKTYGKVES 318

Query: 272 LAEPTLTAISGQSASFTSGG------QHLYKTVSSSTGATSVTTHDY-----GVVLHFTP 320
           ++ P +  ++ Q A  + G         +Y+  ++ T  T+ T ++Y     GV+L  TP
Sbjct: 319 ISNPKVLTLNNQPAMISVGDILRYQKSSIYQNTNAQTTLTN-TDNEYPSIFAGVLLDITP 377

Query: 321 TVLSPGRIGLRIQ---TEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLL 374
            +     I L+I    T+  E    + A      P+    +  + V + +   IVL GL+
Sbjct: 378 VIFGD-EIMLKINPSITKTKENRTEIPATAFESPPNLTTNQLSSIVSVKNNQKIVLGGLI 436

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
             +I  ++  IP+L  IP++  LF  S+      EI     P ++      +LS
Sbjct: 437 SKNISSIENKIPVLGSIPLIKPLFSYSQDIERTEEIVFIIEPKIISQEIQENLS 490


>gi|167817938|ref|ZP_02449618.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei 91]
          Length = 403

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 16/188 (8%)

Query: 234 FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
             G+     GD S      RF+    +  + AL   +  + ++ P +  +SG+      G
Sbjct: 216 LSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVG 275

Query: 291 GQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            Q   ++      SS T   S+T  D G++    PTV+    I L+++ E+S+ V     
Sbjct: 276 QQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMR-DVIELKVREEISDFVATKTG 334

Query: 346 GDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            D  P+   R+  T   L  G  +VL GL++D     + G   L       + F     +
Sbjct: 335 VDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDATARSGYSWLP------SFFDGRSSS 388

Query: 405 REETEIFI 412
           ++ TE+ +
Sbjct: 389 KQRTEVLL 396


>gi|153829308|ref|ZP_01981975.1| msha biogenesis protein mshl [Vibrio cholerae 623-39]
 gi|148875208|gb|EDL73343.1| msha biogenesis protein mshl [Vibrio cholerae 623-39]
          Length = 137

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVL 370
            V+LH  P V+        ++ +  + +      ++P  R  +R++D+ +    G  +V+
Sbjct: 12  NVLLHVHPAVIE-------VEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVI 64

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            GL+K +       +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 65  GGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 113


>gi|315918572|ref|ZP_07914812.1| general secretion pathway protein D [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313692447|gb|EFS29282.1| general secretion pathway protein D [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 419

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 100/249 (40%), Gaps = 20/249 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           K+M  ++I G+ QV +   I ++ +D+  ++GF       S   +K   A  G + V   
Sbjct: 164 KLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEESVGNS 222

Query: 243 GDF--SVKGVLDRFSFET-----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G    S   ++ +FS  T      L  LE    ++  + P++    G    F    + + 
Sbjct: 223 GPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITEEVIV 282

Query: 296 KTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPS 350
                     S +      + G++L   P +     + L I  E+S+      N     +
Sbjct: 283 GEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNQKKDWN 342

Query: 351 YRV-------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +         R   T + + +  TI++ GL +   +  +  +P LS IP LG LF++   
Sbjct: 343 FNAQGGSKMGRSLSTRIHVKNKETILIGGLSRSTHRNTENRVPFLSDIPGLGYLFKSESK 402

Query: 404 NREETEIFI 412
              ET+++I
Sbjct: 403 KDAETDMYI 411


>gi|157364734|ref|YP_001471501.1| type II and III secretion system protein [Thermotoga lettingae TMO]
 gi|157315338|gb|ABV34437.1| type II and III secretion system protein [Thermotoga lettingae TMO]
          Length = 385

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 9/223 (4%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV + V ++EV +D L +IG      G + G ++ +  D+        G  SV+   D F
Sbjct: 166 QVKISVVVSEVSKDNLGEIGLDQ--IGYTFGANQQYNEDWTAVLGLISGVLSVQT--DVF 221

Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +    L ALE+    +  A+P +     + A    G + +   +    G T+  T D G
Sbjct: 222 GTIVARLRALEQDQKAKIKADPWIIVQENKPARLFVGQREII-ILQPEEGTTTTETVDVG 280

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V +  T  V+    + + +   +S          + + R  +  TT+ + SG T+V++GL
Sbjct: 281 VGIDITARVVGKNELEINVAPNISHFTTAQTTSSLSTKR-SELSTTLRIQSGQTVVISGL 339

Query: 374 LKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAA 414
             ++      GIPLL  IP+L  LF  ++   ++ E  IF++A
Sbjct: 340 TVENSSDGYTGIPLLGNIPLLRYLFGVKSDSQSQREVIIFLSA 382


>gi|253988518|ref|YP_003039874.1| type III secretion outer membrane protein pscc [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211637900|emb|CAR66529.1| type iii secretion outer membrane protein pscc [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779968|emb|CAQ83129.1| type iii secretion outer membrane protein pscc [Photorhabdus
           asymbiotica]
          Length = 618

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 24/237 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAADFGGKFVSEGGD 244
           ++ + ++I ++  D L ++G    + G ++GP           +      GGK  S G  
Sbjct: 283 RIEVALSIVDINADNLSELGVDWQV-GINTGPRHIIDITTSAREKEKEKNGGKGESIGST 341

Query: 245 FSVKGVLDRFSFETVLHA---LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            ++  ++DR   + +L     LE   + + ++ PTL       A       +  K     
Sbjct: 342 -ALGSLVDRRGLDYLLAKITLLESKGSAQVVSRPTLLTQENTQAVIDHNETYYVKVEGER 400

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
                  T  YG +L  TP V+  G      + L I+    +P      G +P+      
Sbjct: 401 VAELKSLT--YGTMLRMTPRVIKIGDTPEISLNLHIEDGNQKPN-SSGLGGIPTINRTIV 457

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIFI 412
           DT   +  G ++++ G+ +D++ +    +P L  IP LG LFR +    R    +FI
Sbjct: 458 DTVARVGHGQSLLIGGIYRDEMSETVRKVPFLGDIPYLGVLFRTTTEQVRRSVRLFI 514


>gi|51243965|ref|YP_063849.1| type II protein secretion protein [Desulfotalea psychrophila LSv54]
 gi|50875002|emb|CAG34842.1| related to type II protein secretion protein [Desulfotalea
           psychrophila LSv54]
          Length = 559

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 104/264 (39%), Gaps = 52/264 (19%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADF----GGKFVSEGGDFSV-----------KG 249
           +++++ KQI     I   +   + S   D+    GG     GG  +             G
Sbjct: 299 LKKELYKQIAIDAKIIEVTLSDASSIGIDWSNVLGGDGFKLGGKVNYGDATDAIFHNGSG 358

Query: 250 VLDRFSFET-----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-------KT 297
            LD  + E+     ++ AL      + L+ P L+ ++GQ A  + G    Y       + 
Sbjct: 359 FLDTITLESTDFHVLIKALNEQGDTKVLSNPKLSVMNGQPALISVGRSITYISEIEADRD 418

Query: 298 VSS-------------------STGATSVTTHDYGVVLHFTPTV--LSPGRIGLRIQ-TE 335
            SS                     G T+    D  ++++  P    L P + G  I+  +
Sbjct: 419 TSSIGTSTITYTTETDSLLSGLGLGITATVLDDSEIIMNLVPVTSELVPFKDGEEIEYRQ 478

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           V +   G + G +P   VR+  TTV +  G T+++ GL+ +        +P+L  IP L 
Sbjct: 479 VGDD--GASVG-LPVLNVREMSTTVRVKDGETLIIGGLISESNSTTGSSVPILGSIPGLK 535

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LF     ++++ E+ I   P ++
Sbjct: 536 YLFGYEGKSKQKKELVILIQPRII 559


>gi|171462916|ref|YP_001797029.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192454|gb|ACB43415.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 209

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 5/167 (2%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            +  L ALE     + L+ P +       A+   G +  Y+T  S+   + +      + 
Sbjct: 47  LQAELSALESEGQGKILSNPRIMTGDQVKATIELGTELPYQT--SNQNGSKLQFRKANLR 104

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L   P +   G+I + +   +++  +G+      +   +   + V + +GGT ++ G+L+
Sbjct: 105 LEALPKIHPDGKISMLVG--INKDTVGMKTEQGYAIDTKSLSSEVTVENGGTAIIGGILQ 162

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKP 421
              ++ +  IPLL  IP++G  FR+    +++TE+ +  TP  L KP
Sbjct: 163 TTEREDEVKIPLLGDIPLIGHFFRHKSKLQDKTELLVFLTPTVLDKP 209


>gi|238756264|ref|ZP_04617580.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
 gi|238705519|gb|EEP97920.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
          Length = 660

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)

Query: 267 TAIRT------LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVL 316
           TA+RT      LA P++  +    A F+ G +    T S +T       +V     G+ L
Sbjct: 434 TALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPILTGSQTTTGDNIFRTVDRKSVGIKL 493

Query: 317 HFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAG 372
              P +     + L I+ EVS   E   G   GD+  ++  R     V + S   +V+ G
Sbjct: 494 KVKPQINKGDSVLLEIEQEVSSVAEKTPG-GTGDLGATFNTRTVKNAVMVGSNNIVVVGG 552

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           LL      +   +PLL  IP +G LFR++     +  + +   P +++
Sbjct: 553 LLDSTSHDITSKVPLLGDIPGIGFLFRSTSQKMVKRNLMLFIRPTIIR 600


>gi|32266614|ref|NP_860646.1| hypothetical protein HH1115 [Helicobacter hepaticus ATCC 51449]
 gi|32262665|gb|AAP77712.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 533

 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP--------VIGVNAGDMPSYRVRKADTTVELPS 364
           G++L  TP++   G+I L+I   +++          I +NA   P+   ++  + V+L  
Sbjct: 385 GILLDVTPSI-KDGKIILKINPSITKTKDISIENQTIALNAP--PNLSTKQLSSLVQLKD 441

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  IVL GL+     Q    IP+L  IP +   F   +  +E  E+ I   P +V+  A 
Sbjct: 442 GEQIVLGGLIDKTEGQTTRKIPILGDIPFVKYFFSYKQNIKETQEMVIIIAPHIVRLDAN 501

Query: 425 RDLSRP 430
              + P
Sbjct: 502 ETAASP 507


>gi|71906532|ref|YP_284119.1| type II and III secretion system secretin [Dechloromonas aromatica
           RCB]
 gi|71846153|gb|AAZ45649.1| type II and III secretion system protein:Secretin,
           N-terminal:Secretin/TonB, short N-terminal
           [Dechloromonas aromatica RCB]
          Length = 585

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 23/181 (12%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------- 305
           +F  +L  LE    ++ L+ P +   + Q A    G    + T  S+   T         
Sbjct: 367 NFAALLSFLEGQGDVQVLSSPRIATTNNQKAVLKVGTDDYFVTGISTNVTTGTGTGGNVV 426

Query: 306 --SVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYR------ 352
             ++T   +  G+ L  TP +   G I L +   VS   E    VN GD+ +Y       
Sbjct: 427 TPNITLQPFFSGISLDVTPQIDDEGNIILHVHPSVSVVEEKSKSVNLGDLGTYTLPLASS 486

Query: 353 -VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
            + ++D+ V +  G  + + GL+  +    + G+P +S +P LG LF     +  + E+ 
Sbjct: 487 TINESDSIVRVQDGSIVAIGGLMSQEQNTNRYGLPGISGVPGLGLLFGQKSVSNRKRELV 546

Query: 412 I 412
           I
Sbjct: 547 I 547


>gi|238760627|ref|ZP_04621755.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
 gi|238701160|gb|EEP93749.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
          Length = 657

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 15/149 (10%)

Query: 267 TAIRT------LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVL 316
           TA+RT      LA P++  +    A F+ G +    T S +T       +V   + G+ L
Sbjct: 431 TALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPILTGSQTTTGDNIFRTVDRKNVGIKL 490

Query: 317 HFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAG 372
              P +     + L I+ EVS   E   G   GD+  ++  R     V + S   +V+ G
Sbjct: 491 KVKPQINKGDSVLLEIEQEVSSVAEKAPG-GTGDLGATFNTRMVKNAVMVGSNNIVVVGG 549

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           LL      +   +PLL  IP +G LFR++
Sbjct: 550 LLDSTSHDVTSKVPLLGDIPGIGFLFRST 578


>gi|219566964|dbj|BAH04995.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
          Length = 568

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + AL++    R  A P +  +    A   +  Q+ Y  V+    A  +     GV L   
Sbjct: 407 ISALQQTDQARITANPKVATLDNTEAVMDNR-QNFYVPVAGYQSA-DLYAISAGVSLRVL 464

Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P V+  G   RI + +  E  + +     G++P     + DT   +  G ++++AG   +
Sbjct: 465 PMVVMDGGTVRIRMNVHIEDGQ-ITSQQVGNLPITSQSEIDTQALINEGDSLLIAGYSVE 523

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              +  + +P LSKIP++GALFR  +   +  +     TP ++ P
Sbjct: 524 QQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTPRVITP 568


>gi|119476023|ref|ZP_01616375.1| type II and III secretion system protein [marine gamma
           proteobacterium HTCC2143]
 gi|119450650|gb|EAW31884.1| type II and III secretion system protein [marine gamma
           proteobacterium HTCC2143]
          Length = 617

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 14/219 (6%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + ++  I EV +D  + IG + + + S++  +++   +FG + + E G  S+ G      
Sbjct: 334 ILVEAIIVEVSKDFSQTIGVEWNTSLSANDGAEALT-NFGLRNIDESGAVSLLGAGLNLG 392

Query: 256 F------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----- 304
           F        +  A+        L+ P +  +  + A    G    + T  S+  +     
Sbjct: 393 FYRNGSLRVLAQAIANENDANILSSPRIMTMDNEEAEILVGSNVPFITGQSTGSSSSTGD 452

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
             T++  HD G+ L  TP +     I L I  EV          +      R   T V +
Sbjct: 453 PFTTIERHDIGLTLKITPQINEGDSITLDILQEVETISEATTVANDIVTNKRSIKTKVIV 512

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                +VL GL+ DD Q+L   +P L  +P+LG LFR +
Sbjct: 513 EDDAILVLGGLVSDDTQELVSKVPFLGDLPLLGGLFRTT 551


>gi|296123921|ref|YP_003631699.1| type II and III secretion system protein [Planctomyces limnophilus
            DSM 3776]
 gi|296016261|gb|ADG69500.1| type II and III secretion system protein [Planctomyces limnophilus
            DSM 3776]
          Length = 1469

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 10/117 (8%)

Query: 313  GVVLHFTPTVLSPGRIGLRIQTEVSE------PVI----GVNAGDMPSYRVRKADTTVEL 362
            G++L  TP +   G I + +  E S+      P+       N  + P   +  A T + +
Sbjct: 1192 GIILTVTPRISPDGTIVMELIAEKSQFRGNGVPIFTDATNGNVIESPIKDISAARTAISV 1251

Query: 363  PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            P+G T+V+ G++    +  +  +P +  IPI+G LFR    +   TE+ I  TP ++
Sbjct: 1252 PNGQTVVMGGMITATDETSERKVPFIGDIPIVGHLFRYDSKSHVRTELLIFLTPRVI 1308


>gi|167838357|ref|ZP_02465216.1| putative bacteriophage-related lipoprotein [Burkholderia
           thailandensis MSMB43]
          Length = 420

 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 16/188 (8%)

Query: 234 FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
             G+     GD S      RF+    +  + AL   +  + ++ P +  +SG+      G
Sbjct: 233 LSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNADSRFKVVSSPHVRIVSGEHVRLNVG 292

Query: 291 GQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            Q   ++      SS T   S+T  D G++    PTV+    I L+++ E+S+ V     
Sbjct: 293 QQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMR-DVIELKVREEISDFVATKTG 351

Query: 346 GDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            D  P+   R+  T   L  G  +VL GL++D     + G   L       + F     +
Sbjct: 352 VDTSPTKNTRQLQTVTRLRDGELVVLGGLIQDRDATARSGYSWLP------SFFDGRSSS 405

Query: 405 REETEIFI 412
           ++ TE+ +
Sbjct: 406 KQRTEVLL 413


>gi|188578246|ref|YP_001915175.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522698|gb|ACD60643.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 655

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 7/174 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTT 309
           F+ +  L A+++      ++ P +   + +      G +  Y T+S S        +V  
Sbjct: 476 FNLDIELSAMQQEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQF 535

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGG 366
            +  + L  TPT+ +  R+ L +  +  E    ++    G +P    R+ +T V +  G 
Sbjct: 536 KEVLLELKVTPTITNDNRVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGE 595

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           T+V+ G+ +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 596 TVVIGGVYEFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 649


>gi|86157114|ref|YP_463899.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773625|gb|ABC80462.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 897

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 11/110 (10%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           L   P +   G I L I+ +  E     P +G      P+   R   T +      TIV+
Sbjct: 656 LKIKPQINEGGNIRLTIEEQTEEIAEKDPQLG------PTTAKRSVKTQIVARDQSTIVI 709

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            GL++D   +    IP L  +PILG LFR++   +++  + +  TP++++
Sbjct: 710 GGLIQDRAIRSVSKIPFLGSLPILGWLFRDTTTTKQKVNLLLFLTPYIIR 759


>gi|78779577|ref|YP_397689.1| Type II secretory pathway component PulD-like [Prochlorococcus
           marinus str. MIT 9312]
 gi|78713076|gb|ABB50253.1| Type II secretory pathway component PulD-like protein
           [Prochlorococcus marinus str. MIT 9312]
          Length = 556

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 3/78 (3%)

Query: 344 NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNS 401
           N G++     R+ DT  V + +G T+VL G+++D DI+ L +  P+L  +PI+G LFR++
Sbjct: 452 NCGEVNLLNTRRLDTGAVRIKNGETLVLTGVIQDSDIETLVK-FPILGDLPIMGPLFRST 510

Query: 402 RFNREETEIFIAATPFLV 419
                + E+ +  TP ++
Sbjct: 511 SKEVGKRELIVLVTPRII 528


>gi|84622715|ref|YP_450087.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366655|dbj|BAE67813.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 649

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAG 372
           L  TPT+ +  R+ L +  +  E    ++    G +P    R+ +T V +  G T+V+ G
Sbjct: 536 LKVTPTITNDNRVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGG 595

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 596 VYEFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 643


>gi|257467448|ref|ZP_05631759.1| general secretion pathway protein D [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 435

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 100/249 (40%), Gaps = 20/249 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           K+M  ++I G+ QV +   I ++ +D+  ++GF       S   +K   A  G + V   
Sbjct: 180 KLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEESVGNS 238

Query: 243 GDF--SVKGVLDRFSFET-----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G    S   ++ +FS  T      L  LE    ++  + P++    G    F    + + 
Sbjct: 239 GPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITEEVIV 298

Query: 296 KTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPS 350
                     S +      + G++L   P +     + L I  E+S+      N     +
Sbjct: 299 GEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNQKKDWN 358

Query: 351 YRV-------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +         R   T + + +  TI++ GL +   +  +  +P LS IP LG LF++   
Sbjct: 359 FNAQGGSKMGRSLSTRIHVKNKETILIGGLSRSTHRNTENRVPFLSDIPGLGYLFKSESK 418

Query: 404 NREETEIFI 412
              ET+++I
Sbjct: 419 KDAETDMYI 427


>gi|58580784|ref|YP_199800.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425378|gb|AAW74415.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 673

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 7/174 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTT 309
           F+ +  L A+++      ++ P +   + +      G +  Y T+S S        +V  
Sbjct: 494 FNLDIELSAMQQEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQF 553

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGG 366
            +  + L  TPT+ +  R+ L +  +  E    ++    G +P    R+ +T V +  G 
Sbjct: 554 KEVLLELKVTPTITNDNRVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGE 613

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           T+V+ G+ +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 614 TVVIGGVYEFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 667


>gi|17549095|ref|NP_522435.1| Hrp conserved HRCC transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|2833448|sp|Q52498|HRPA_RALSO RecName: Full=Hypersensitivity response secretion protein hrpA;
           Flags: Precursor
 gi|6066715|emb|CAB58261.1| HrpA [Ralstonia solanacearum]
 gi|17431346|emb|CAD18025.1| hrp conserved hrcc transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|1097294|prf||2113360W hrpA gene
          Length = 568

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + AL++    R  A P +  +    A   +  Q+ Y  V+    A  +     GV L   
Sbjct: 407 ISALQQTDQARITANPKVATLDNTEAVMDNR-QNFYVPVAGYQSA-DLYAISAGVSLRVL 464

Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P V+  G   RI + +  E  + +     G++P     + DT   +  G ++++AG   +
Sbjct: 465 PMVVMDGGTVRIRMNVHIEDGQ-ITSQQVGNLPITSQSEIDTQALINEGDSLLIAGYSVE 523

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              +  + +P LSKIP++GALFR  +   +  +     TP ++ P
Sbjct: 524 QQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTPRVITP 568


>gi|304311658|ref|YP_003811256.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
 gi|301797391|emb|CBL45611.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
          Length = 598

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 27/244 (11%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--FVSEGGDFSVKGVL-- 251
           + ++ TI +V  D L++ G      G S+G + +   +   K  F+      ++ G+   
Sbjct: 340 IEIEATIIDVNTDKLREQGVDW---GWSNGRTSAMTGEVDAKNNFLEVLAGDAISGLAQN 396

Query: 252 ----------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                     +R  F   L+ LER   ++  + P +  ++   A   S  + +Y  V   
Sbjct: 397 AGMQAGTIIGNRNRFVARLNLLEREGVVKVASRPKVVTLNDLEAVLESS-RSVYVPVQ-- 453

Query: 302 TGATSVTTHDY--GVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
            GA  V       G VL  TP V++  G   +R+     + VI  ++ +      R A +
Sbjct: 454 -GAYDVDLFKVFSGTVLRVTPHVINDVGTKKIRLIISAEDGVIDEHSTNNAPSVTRNAVS 512

Query: 359 TVELPSGGTIVLAGLLK--DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           T  +  G T +L G L   + I Q+++ +PLL  IP+LGALFR+     + +E     TP
Sbjct: 513 TQAVIEGETSLLLGGLSRTESITQVRK-VPLLGSIPLLGALFRSEAKVVQNSERLFLITP 571

Query: 417 FLVK 420
            L++
Sbjct: 572 RLLE 575


>gi|114778365|ref|ZP_01453212.1| probable pilQ; fimbrial type-4 assembly signal peptide protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114551328|gb|EAU53885.1| probable pilQ; fimbrial type-4 assembly signal peptide protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 793

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 85/208 (40%), Gaps = 4/208 (1%)

Query: 214 GFQHSITGSSSGPSKSF-AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           G+ H++TG++S P                   +++  + +  +    L A E    I+ +
Sbjct: 581 GYTHTVTGAASAPQNVVDLGAAVKAGAGGAIGYTLGTLNNALNLNLELSAAEAEGQIKVV 640

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTG-ATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           + P +   + Q A      Q  ++  ++ST    S       + L  TP + +  RI ++
Sbjct: 641 SSPRVFTSNLQEALIEQDQQIPFQVTTASTPPVVSYQLKSAKLTLKVTPQITADKRIIMQ 700

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +      PV   N    P+   ++  T + + +G T+VL G+          G+P L  I
Sbjct: 701 LVVNKDTPV--ANTVGPPTIDKKQIMTKLLVKNGETMVLGGIYTQTTSDQVNGVPGLQNI 758

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P +G  F+  +  R   E+ I  TP ++
Sbjct: 759 PFIGNFFKRKQKVRNRNELLIFITPTII 786


>gi|115358977|ref|YP_776115.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia ambifaria AMMD]
 gi|115284265|gb|ABI89781.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria AMMD]
          Length = 681

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           +P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  K 
Sbjct: 504 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKS 563

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G+P LS IP++G LF+ +  +    E F   TP +V   AM
Sbjct: 564 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTAAM 604


>gi|313110403|ref|ZP_07796289.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa 39016]
 gi|310882791|gb|EFQ41385.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa 39016]
          Length = 604

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           YG +L  TP V++ G    I L +  E  S+         +P+      DT   +  G +
Sbjct: 397 YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQS 456

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +++ G+ +D++ Q +  +P L  IP LGALFR +
Sbjct: 457 LLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTT 490


>gi|15596913|ref|NP_250407.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa PAO1]
 gi|9947691|gb|AAG05105.1|AE004598_4 Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa PAO1]
          Length = 600

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           YG +L  TP V++ G    I L +  E  S+         +P+      DT   +  G +
Sbjct: 393 YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQS 452

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +++ G+ +D++ Q +  +P L  IP LGALFR +
Sbjct: 453 LLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTT 486


>gi|34498052|ref|NP_902267.1| type III secretion system EscC protein [Chromobacterium violaceum
           ATCC 12472]
 gi|34103907|gb|AAQ60267.1| type III secretion system EscC protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 495

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 41/241 (17%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF------AADFGGKFVSEGGDFSVKG 249
           + + V I +V    L  +G   S + S  G   SF       +D     +S  G F VK 
Sbjct: 272 IEVSVMIIDVNSQDLSALGIDWSASASIGGNGISFNSAGQQGSDNFSTVISNTGGFMVK- 330

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVT 308
                     L+AL++    + L+ P++  +    A          K ++       S++
Sbjct: 331 ----------LNALQQKAKAQILSRPSVVTLDNTQAVLDRNITFYTKLLAEKVAKLESIS 380

Query: 309 THDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGD------MPSYRVRKAD 357
           T   G +L  TP ++  G      + L IQ        G  AG       +P     +  
Sbjct: 381 T---GSLLRVTPRLVDEGGQRNVMLTLVIQD-------GRQAGTVSQHEPLPQTLNAEVS 430

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIF-IAAT 415
           T   L +G +++L G ++D+  + +  IPLL  IP++G LFR+++ N R    +F I A 
Sbjct: 431 TQTLLKAGQSLLLGGFVQDEHSEGESKIPLLGDIPLIGKLFRSTQKNSRSTVRLFLIKAE 490

Query: 416 P 416
           P
Sbjct: 491 P 491


>gi|116049666|ref|YP_791529.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584887|gb|ABJ10902.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 600

 Score = 45.1 bits (105), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           YG +L  TP V++ G    I L +  E  S+         +P+      DT   +  G +
Sbjct: 393 YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQS 452

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +++ G+ +D++ Q +  +P L  IP LGALFR +
Sbjct: 453 LLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTT 486


>gi|304415496|ref|ZP_07396135.1| type III outer membrane secretin precursor [Candidatus Regiella
           insecticola LSR1]
 gi|304282655|gb|EFL91179.1| type III outer membrane secretin precursor [Candidatus Regiella
           insecticola LSR1]
          Length = 493

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 16/213 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-VKGVLDRF 254
           + + VTI +V    + Q+G   + + S +G   SF +   G        FS V G  D F
Sbjct: 268 IEISVTIIDVDAGNINQLGIDWTSSTSLAGNKVSFRS---GLIPGSNDSFSSVIGDTDNF 324

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
                L AL++ +  R L+ P++  ++   A          K            T   G 
Sbjct: 325 MVR--LKALQQNSRARVLSRPSVVTLNNIPAVLDKNITFYTKLQGDKVAKLESITS--GS 380

Query: 315 VLHFTPTVLSP-GR----IGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368
           +L  TP +++  GR    + L I+  V +     NA + +P  +  +  T   L  G ++
Sbjct: 381 LLRVTPRMINDNGRHEVLLNLNIKDGVQKS--SNNATEPLPQVQDSQISTQATLKIGQSL 438

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +L G ++D   + ++ +P L  IP++G LFR++
Sbjct: 439 LLGGFIQDRQSEAEKKVPFLGDIPVIGELFRST 471


>gi|53720957|ref|YP_109943.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei K96243]
 gi|52211371|emb|CAH37360.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei K96243]
          Length = 458

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 16/188 (8%)

Query: 234 FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
             G+     GD S      RF+    +  + AL   +  + ++ P +  +SG+      G
Sbjct: 271 LSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVG 330

Query: 291 GQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            Q   ++      SS T   S+T  D G++    PTV+    I L+++ E+S+ V     
Sbjct: 331 QQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMR-DVIELKVREEISDFVATKTG 389

Query: 346 GDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            D  P+   R+  T   L  G  +VL GL++D     + G   L       + F     +
Sbjct: 390 VDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDATARSGYSWLP------SFFDGRSSS 443

Query: 405 REETEIFI 412
           ++ TE+ +
Sbjct: 444 KQRTEVLL 451


>gi|167906931|ref|ZP_02494136.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei NCTC 13177]
          Length = 588

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++AL+  + ++  A P +  +    A   +  +   K    +S    SV+T   GV L  
Sbjct: 425 VNALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P ++  G   RI + +     + + G    ++P     + +T   +  G ++++AG   
Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           D       G+P LSKIP+LGALFR    ++   E     +P ++ P
Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586


>gi|81301259|ref|YP_401467.1| general secretion pathway protein D [Synechococcus elongatus PCC
           7942]
 gi|81170140|gb|ABB58480.1| general secretion pathway protein D [Synechococcus elongatus PCC
           7942]
          Length = 771

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%)

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           T++L+G+++D+ ++    IPLL  +P++G+LFR S  +R+  E+ +  TP
Sbjct: 684 TLILSGIIQDEERERVAKIPLLGDLPLIGSLFRTSYTDRQRREVVVVITP 733


>gi|134283528|ref|ZP_01770228.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei 305]
 gi|134245277|gb|EBA45371.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei 305]
          Length = 447

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 16/188 (8%)

Query: 234 FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
             G+     GD S      RF+    +  + AL   +  + ++ P +  +SG+      G
Sbjct: 260 LSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVG 319

Query: 291 GQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            Q   ++      SS T   S+T  D G++    PTV+    I L+++ E+S+ V     
Sbjct: 320 QQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMR-DVIELKVREEISDFVATKTG 378

Query: 346 GDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            D  P+   R+  T   L  G  +VL GL++D     + G   L       + F     +
Sbjct: 379 VDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDATARSGYSWLP------SFFDGRSSS 432

Query: 405 REETEIFI 412
           ++ TE+ +
Sbjct: 433 KQRTEVLL 440


>gi|56751665|ref|YP_172366.1| type IV pilus assembly protein PilQ [Synechococcus elongatus PCC
           6301]
 gi|56686624|dbj|BAD79846.1| type IV pilus assembly protein PilQ [Synechococcus elongatus PCC
           6301]
          Length = 725

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%)

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           T++L+G+++D+ ++    IPLL  +P++G+LFR S  +R+  E+ +  TP
Sbjct: 638 TLILSGIIQDEERERVAKIPLLGDLPLIGSLFRTSYTDRQRREVVVVITP 687


>gi|107101148|ref|ZP_01365066.1| hypothetical protein PaerPA_01002180 [Pseudomonas aeruginosa PACS2]
 gi|254234815|ref|ZP_04928138.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa C3719]
 gi|296389899|ref|ZP_06879374.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa PAb1]
 gi|1781385|gb|AAC44774.1| PscC [Pseudomonas aeruginosa]
 gi|126166746|gb|EAZ52257.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa C3719]
          Length = 600

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           YG +L  TP V++ G    I L +  E  S+         +P+      DT   +  G +
Sbjct: 393 YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQS 452

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +++ G+ +D++ Q +  +P L  IP LGALFR +
Sbjct: 453 LLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTT 486


>gi|110639568|ref|YP_679778.1| type II general secretion pathway (GSP) D protein [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110282249|gb|ABG60435.1| type II general secretion pathway (GSP) D protein [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 656

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 14/155 (9%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           SF   L ALE    +   + P L+ ++G  A+  S GQ +Y  V +     S+TT+    
Sbjct: 483 SFYMTLSALETNNNVEIKSMPKLSTLNGHDANM-SIGQTVYYEVQTQNTLGSLTTNTITT 541

Query: 315 V----------LHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELP 363
           V          L   P V    ++ L I  EV++      NA   P+    +  + + + 
Sbjct: 542 VQYQSVQANQTLSIKPLVSGDDQVTLTI--EVNQTSFAKSNAAGPPNTTTSQFKSIIRVR 599

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           +   IVL GL K       EG P+LS+IP++  LF
Sbjct: 600 NEEMIVLGGLEKISKSIDTEGTPILSRIPVIKLLF 634


>gi|254240060|ref|ZP_04933382.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa 2192]
 gi|126193438|gb|EAZ57501.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa 2192]
          Length = 600

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           YG +L  TP V++ G    I L +  E  S+         +P+      DT   +  G +
Sbjct: 393 YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQS 452

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +++ G+ +D++ Q +  +P L  IP LGALFR +
Sbjct: 453 LLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTT 486


>gi|218892331|ref|YP_002441198.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa LESB58]
 gi|218772557|emb|CAW28340.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa LESB58]
          Length = 600

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           YG +L  TP V++ G    I L +  E  S+         +P+      DT   +  G +
Sbjct: 393 YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQS 452

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +++ G+ +D++ Q +  +P L  IP LGALFR +
Sbjct: 453 LLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTT 486


>gi|254264333|ref|ZP_04955198.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
 gi|254215335|gb|EET04720.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
          Length = 588

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 30/252 (11%)

Query: 196 VTLKVTIAEVRRDILKQIGFQ---HSITGS-SSGPSKSFAADFGGKFVSE-------GGD 244
           + ++  I E+  D+L++IG     H+  G   +G   +   D+ G  ++         G+
Sbjct: 339 IEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQINPFFGTTTLAGN 398

Query: 245 FSVKGVLDRFSFETVL-----HALERATAIRTLAE-----PTLTAISGQSASFTSGGQHL 294
             V       S   V+     H + R +A+++ ++       L A    S +        
Sbjct: 399 AVVNAAPAGVSVTAVVGDAARHLMARVSALQSTSKVKIDASPLVATLDNSEAVMDNTTRF 458

Query: 295 YKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMP 349
           +  VS    A   SV+T   GV L   P ++  G   RI + +     + + G    ++P
Sbjct: 459 FVKVSGYASAELYSVST---GVSLRVLPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLP 514

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
                + +T   +  G ++++AG   D       G+P LSKIP+LGALFR    ++   E
Sbjct: 515 VITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALFRYHSDSQNHME 574

Query: 410 IFIAATPFLVKP 421
                +P ++ P
Sbjct: 575 RVFLLSPRIIDP 586


>gi|159028225|emb|CAO88035.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 518

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G +++L+G++++  Q  +  +P+L  IPILGALFR+       +E+ I  TP ++
Sbjct: 426 IRLRDGQSLILSGIIQERQQSSETKVPILGDIPILGALFRSRTNQNSRSEVIILLTPKII 485

Query: 420 KPVAMRDL 427
           +  A   L
Sbjct: 486 EDSATSTL 493


>gi|299069241|emb|CBJ40501.1| Type III secretion protein [Ralstonia solanacearum CMR15]
          Length = 590

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + AL++    R  A P +  +    A   +  Q+ Y  V+    A  +     GV L   
Sbjct: 429 ISALQQTDQARITANPKVATLDNTEAVMDNR-QNFYVPVAGYQSA-DLYAISAGVSLRVL 486

Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P V+  G   RI + +  E  + +     G++P     + DT   +  G ++++AG   +
Sbjct: 487 PMVVMDGGTVRIRMNVHIEDGQ-ITSQQVGNLPITSQSEIDTQALINEGDSLLIAGYSVE 545

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              +  + +P LSKIP++GALFR  +   +  +     TP ++ P
Sbjct: 546 QQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTPRVITP 590


>gi|76817445|ref|YP_335577.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1710b]
 gi|76581918|gb|ABA51392.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710b]
          Length = 630

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 30/252 (11%)

Query: 196 VTLKVTIAEVRRDILKQIGFQ---HSITGS-SSGPSKSFAADFGGKFVSE-------GGD 244
           + ++  I E+  D+L++IG     H+  G   +G   +   D+ G  ++         G+
Sbjct: 381 IEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQINPFFGTTTLAGN 440

Query: 245 FSVKGVLDRFSFETVL-----HALERATAIRTLAE-----PTLTAISGQSASFTSGGQHL 294
             V       S   V+     H + R +A+++ ++       L A    S +        
Sbjct: 441 AVVNAAPAGVSVTAVVGDAARHLMARVSALQSTSKVKIDASPLVATLDNSEAVMDNTTRF 500

Query: 295 YKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMP 349
           +  VS    A   SV+T   GV L   P ++  G   RI + +     + + G    ++P
Sbjct: 501 FVKVSGYASAELYSVST---GVSLRVLPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLP 556

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
                + +T   +  G ++++AG   D       G+P LSKIP+LGALFR    ++   E
Sbjct: 557 VITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALFRYHSDSQNHME 616

Query: 410 IFIAATPFLVKP 421
                +P ++ P
Sbjct: 617 RVFLLSPRIIDP 628


>gi|296162480|ref|ZP_06845271.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. Ch1-1]
 gi|295887293|gb|EFG67120.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. Ch1-1]
          Length = 709

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           +HALE A   R L+ P +  ++   A  TS    +Y  V+ +     +   D G+ L  T
Sbjct: 427 IHALEDAGQARVLSSPQVLTLNNMEAVLTSH-SSVYVRVAGNQD-VDLYNIDTGLTLKVT 484

Query: 320 PTVLS---PGR-IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           P++ S   P R I L IQ +       ++   +P        T   +  G ++++ G   
Sbjct: 485 PSIESAAEPRRNIRLNIQIDDGAFNTSMSVDGIPKVDNHSIVTQAIVRDGESLLVGGYQY 544

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  +     +P+L  +P +GALFR+++  RE  E  I  TP L +
Sbjct: 545 ERSESTTSKVPVLGDVPYVGALFRDTQTTRERLERLILITPRLKR 589


>gi|170699432|ref|ZP_02890477.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
 gi|170135688|gb|EDT03971.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
          Length = 680

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           +P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  K 
Sbjct: 504 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKS 563

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G+P LS IP++G LF+ +  +    E F   TP +V   AM
Sbjct: 564 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTAAM 604


>gi|34556961|ref|NP_906776.1| putative type II secretion system D [Wolinella succinogenes DSM
           1740]
 gi|34482676|emb|CAE09676.1| PUTATIVE TYPE II SECRETION SYSTEM D [Wolinella succinogenes]
          Length = 731

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 7/114 (6%)

Query: 313 GVVLHFTPTVLSPGRIGLRI-----QTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGG 366
           GV+L  TP+V +   I L+I     QT+ ++      A + P +    +  + V +  G 
Sbjct: 586 GVLLDITPSVFND-EIMLKINPSITQTKSTDVENASTALETPPNLSTNQLSSLVRIKDGE 644

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            IVL GL+    Q+ +  +PLL  +P+LG LF  +       E+ I  TP ++K
Sbjct: 645 KIVLGGLISKSNQKKENKVPLLGDVPVLGYLFSYNADVESTDEMVIVITPHIIK 698


>gi|218248885|ref|YP_002374256.1| type II and III secretion system protein [Cyanothece sp. PCC 8801]
 gi|218169363|gb|ACK68100.1| type II and III secretion system protein [Cyanothece sp. PCC 8801]
          Length = 743

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           + L  G T++L+G++ +  Q +   +P+L  IP+LGALFR+    +  +E+ +  TP
Sbjct: 653 IRLRDGQTLILSGIISETDQTITNKVPILGDIPLLGALFRSQTDTKNRSEVIVLLTP 709


>gi|283779820|ref|YP_003370575.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
 gi|283438273|gb|ADB16715.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
          Length = 1305

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%)

Query: 362  LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +P GGT++L G+ +    + + G+PLLSK+P +  LF+N    RE   + +  TP ++
Sbjct: 1233 VPDGGTVLLGGIKRLREGRNERGVPLLSKVPYVSRLFKNVGIGREAQSLMMMVTPRII 1290


>gi|322435311|ref|YP_004217523.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321163038|gb|ADW68743.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 819

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 12/173 (6%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSV------TT 309
           L+AL      R L  P + A  GQ A+   G +    T S     STG  S+      T 
Sbjct: 413 LNALLTDGDTRILQNPRIRATDGQRATLKIGSKIPIATGSYNAGVSTGVASIGVQTQFTY 472

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367
            D GV +  TPTV     + ++++ EVS     + ++    P    R ++  +++  G  
Sbjct: 473 IDVGVNIDITPTVHYDREVSMKMKIEVSSQSNTVVISGVSEPIISQRISEQVIQVQDGEP 532

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +LAG+L     +   G P L ++P     F       ++ E+     P +V+
Sbjct: 533 SILAGILTHQDSKTVSGTPFLGELPFFKYFFSTQSKETQQDELVFLIIPHVVR 585


>gi|257061946|ref|YP_003139834.1| type II and III secretion system protein [Cyanothece sp. PCC 8802]
 gi|256592112|gb|ACV02999.1| type II and III secretion system protein [Cyanothece sp. PCC 8802]
          Length = 899

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           + L  G T++L+G++ +  Q +   +P+L  IP+LGALFR+    +  +E+ +  TP
Sbjct: 809 IRLRDGQTLILSGIISETDQTITNKVPILGDIPLLGALFRSQTDTKNRSEVIVLLTP 865


>gi|320184380|gb|EFW59192.1| General secretion pathway protein D [Shigella flexneri CDC 796-83]
          Length = 164

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           +L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IVL GL+
Sbjct: 1   MLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIVLGGLM 58

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            D   +    +PLL  IP++G LF+++   +E+  + +   P ++
Sbjct: 59  DDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTIL 103


>gi|149926070|ref|ZP_01914333.1| putative type III secretion protein [Limnobacter sp. MED105]
 gi|149825358|gb|EDM84569.1| putative type III secretion protein [Limnobacter sp. MED105]
          Length = 530

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 95/236 (40%), Gaps = 20/236 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--KGVLDR 253
           + ++  + EV +  L ++G +  +       S  FA DF G  V      +     ++D 
Sbjct: 268 IEVEAMMVEVDQKGLNELGLEFGLL------SDRFAYDFPGSGVGRPSLIAAGATSIVDP 321

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F   L AL      + LA PT+      SA +    Q LY  VS    A  V     G
Sbjct: 322 MRFMARLKALSADENAKVLARPTIVTQDNVSA-YIDLSQTLYIQVSGERVA-DVIPITAG 379

Query: 314 VVLHFTPTVL---SPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
            +L  TP V+      RI LRI+ +   ++E   G+N   MP  +     T   +     
Sbjct: 380 SLLQVTPRVVIDEQEERIFLRIEIQDGSLTENTQGIN---MPRVQNTSLSTQAVIQREKA 436

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPV 422
           I++ G  ++  +     +PLL  IP +G  F ++    +        TP L+ +P+
Sbjct: 437 ILIGGYNRESTEVNDYKVPLLGDIPYIGKAFTSTEKRTQTVARLFLITPRLIDRPI 492


>gi|308095376|ref|ZP_05905407.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus Peru-466]
 gi|308086743|gb|EFO36438.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus Peru-466]
          Length = 525

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 3/130 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++ +    ++ P L   + + A    G +  Y   SSS+GATSVT     + L  T
Sbjct: 397 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVT 455

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 456 PQITPDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHS 515

Query: 378 IQQLKEGIPL 387
           I    + +PL
Sbjct: 516 ITNSVDKVPL 525


>gi|238796139|ref|ZP_04639650.1| General secretion pathway protein D [Yersinia mollaretii ATCC
           43969]
 gi|238720084|gb|EEQ11889.1| General secretion pathway protein D [Yersinia mollaretii ATCC
           43969]
          Length = 625

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 13/148 (8%)

Query: 267 TAIRT------LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSVTTHD---YGVVL 316
           TA+RT      LA P++  +    A F+ G +  +     ++TG     T D    G+ L
Sbjct: 399 TALRTNNQNDILATPSIVTLDNMEAEFSVGQEVPVLSGSQTTTGDNIFRTVDRKSVGIKL 458

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDM-PSYRVRKADTTVELPSGGTIVLAGL 373
              P +     + L I+ EVS          GD+  ++  R     V + S   +V+ GL
Sbjct: 459 KVKPQINKGDSVLLEIEQEVSSVAAKAPSGTGDLGATFNSRTVKNAVMVGSNNIVVVGGL 518

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNS 401
           L    Q +   +PLL  IP +G LFR++
Sbjct: 519 LDSTSQDITSKVPLLGDIPGVGFLFRST 546


>gi|166713254|ref|ZP_02244461.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 648

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAG 372
           L  TPT+ +  R+ L +  +  E    ++    G +P    R+ +T V +  G T+V+ G
Sbjct: 535 LKVTPTITNDNRVFLSMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGG 594

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 595 VYEFTDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642


>gi|330501497|ref|YP_004378366.1| type 4 fimbrial biogenesis outer membrane protein PilQ [Pseudomonas
           mendocina NK-01]
 gi|328915783|gb|AEB56614.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas mendocina NK-01]
          Length = 704

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E++ +   +++P +     ++A    G +  Y+  SSS  ATS +  +  + L  T
Sbjct: 535 LSAMEKSGSGEVVSQPKVVTSDKETAKILKGTEVPYQESSSSG-ATSTSFKEAALSLEVT 593

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ + ++     P   V +  G +P+    + +  V +  G TIV+ G+  + 
Sbjct: 594 PQITPDNRVLMEVKVTKDAPDFSVTSSTGGIPAINKNEVNAKVLVADGETIVIGGVYSNT 653

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
             +  + +P L  +P +G +FR       + E+ +  TP ++   A+
Sbjct: 654 QSKSVDKVPFLGDLPFVGRVFRRDLVQDRKAELLVFLTPRIMNNQAI 700


>gi|56461571|ref|YP_156852.1| Type II secretory pathway, component PulJ [Idiomarina loihiensis
           L2TR]
 gi|56180581|gb|AAV83303.1| Type II secretory pathway, component PulJ [Idiomarina loihiensis
           L2TR]
          Length = 427

 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 14/236 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-----SEGGDFSVKG 249
           QV ++  +  V+ ++ K++G +  ++       +   +   G  V     +  G FS   
Sbjct: 192 QVLIEARMVTVKANVSKELGIRWGVSEYGLAIPEDAGSFVKGMQVDLPTAAPAGTFSAN- 250

Query: 250 VLDRFSFETVLH----ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            L R S + +L     ALE+      +  P +   S Q  ++   G  +    +++ GAT
Sbjct: 251 -LARLSDDILLDLELTALEQENKAEIITSPKIFT-SNQQPAYIEQGTEIPYVETAAHGAT 308

Query: 306 SVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
           +V      + L  TP +     +   L I        +    G   +   ++  T V   
Sbjct: 309 AVQFKKAVMGLSVTPQITPNNHVLMELTITQNTRGDTVATPTGPAVAIDTQEMSTRVLAK 368

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G TIVL G+ ++        +P+L  +P++G LF + +   E+ E+ I  TP ++
Sbjct: 369 NGETIVLGGIFQEHNLNDDSRVPILGSLPLIGKLFSHQQQRDEKRELMIFVTPTIL 424


>gi|254491741|ref|ZP_05104920.1| Bacterial type II and III secretion system protein [Methylophaga
           thiooxidans DMS010]
 gi|224463219|gb|EEF79489.1| Bacterial type II and III secretion system protein [Methylophaga
           thiooxydans DMS010]
          Length = 743

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 28/167 (16%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--------------TVSSSTGAT 305
           L  LE    +R L+ P + A + + A    G + L                 +  S    
Sbjct: 380 LEFLEENNRVRVLSNPMIVASNHRQAELFIGAETLLTDGFEFFPAIIDNGVVIQPSYVQA 439

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSYRVRKAD 357
            V   D G+ L  TP +     + L I+ E S         P+   N G + +  V   D
Sbjct: 440 IVNREDIGITLRITPRINGDETVELLIEQENSTVNPGGGSVPITDGN-GTVQNLPVDTVD 498

Query: 358 T-----TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           T     TV    G T+ + GL++    + +  +P+LS+IP+LG +FR
Sbjct: 499 TARLTGTVMAKDGLTVAVGGLIRTSKNKNERKVPVLSEIPVLGRIFR 545


>gi|260772068|ref|ZP_05880985.1| type IV pilus biogenesis protein PilQ [Vibrio metschnikovii CIP
           69.14]
 gi|260612935|gb|EEX38137.1| type IV pilus biogenesis protein PilQ [Vibrio metschnikovii CIP
           69.14]
          Length = 573

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 3/162 (1%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A++R +    ++ P L   + + A    G +  Y   SSS+GAT+V      + L  T
Sbjct: 411 LSAMQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVAFKKAVLSLQVT 469

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  ++    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 470 PQITPDNRLVLDLSVTQDRPGDIVKTGTGEAVAIHTQRIGTQVLVNNGETVVLGGIFQHS 529

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR S     ++E+ I  TP +V
Sbjct: 530 ITNTVDKVPLLGDLPLLGALFRRSYQQMGKSELLIFVTPKVV 571


>gi|166714017|ref|ZP_02245224.1| HrcC [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|61219456|gb|AAX40633.1| HrcC [Xanthomonas oryzae pv. oryzicola]
          Length = 607

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 98/244 (40%), Gaps = 23/244 (9%)

Query: 196 VTLKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           + +  TI E+R   ++ +G       QH+   TG   G    F     G   ++G    V
Sbjct: 369 LQIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPV 427

Query: 248 KGVL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            G L        R+   T + ALE     + ++ P +  +    A      Q   +   S
Sbjct: 428 GGTLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--S 484

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKAD 357
              +  +     GV L   P+V+ PG     +R+   + +  +G N  D +P     +  
Sbjct: 485 GYASADLYNLSAGVSLRVLPSVV-PGSPNSQMRLDVRIEDGQLGSNTVDGIPVITSSEIK 543

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T   +  G ++++AG   D  +     +P LSKIP+LG LF++ + N    +     TP 
Sbjct: 544 TQAFVNEGQSLLIAGYAYDADETNLNAVPGLSKIPLLGNLFKHRQKNGSRMQRLFLLTPH 603

Query: 418 LVKP 421
           +V P
Sbjct: 604 VVSP 607


>gi|229515151|ref|ZP_04404611.1| hypothetical protein VCB_002808 [Vibrio cholerae TMA 21]
 gi|71480608|gb|AAZ32230.1| VcsC2 [Vibrio cholerae non-O1/non-O139]
 gi|229347856|gb|EEO12815.1| hypothetical protein VCB_002808 [Vibrio cholerae TMA 21]
          Length = 485

 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
             AL      R++ E  L A+  Q   F          +S     T     D    L+ T
Sbjct: 327 FQALYTNGIARSVYETNLLALENQQGQFGKKQTATLTLISDKEVKTEKIEADNS--LYVT 384

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKD 376
             +L  G++  RIQ  V E +     GD    P    +  ++ V +  G T++L G    
Sbjct: 385 GRLLPSGQVQARIQY-VEEALD--EEGDSNRPPRVSSQSLNSEVYIQPGQTVILGGFDNT 441

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
             QQ + G+P+LS IP+LG LF+ +  ++ + + +++
Sbjct: 442 VTQQQESGVPVLSSIPLLGELFKYTSESKHKYKRYVS 478


>gi|89902101|ref|YP_524572.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89346838|gb|ABD71041.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 614

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 34/237 (14%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G Q ++ G S+G   +  AD      +  G F +    D   F+ VL  LE    ++ L+
Sbjct: 344 GVQSNLPGFSAG--SALLADGISLPAAGAGLFGLAFATD--GFQAVLGFLETQGDVQILS 399

Query: 274 EPTLTAISGQSASFTSGGQHLYKT---------------VSSSTGATSVTTHDYGVVLHF 318
            P +  ++ Q A    G +  + T                + +  + ++T    G+ L  
Sbjct: 400 SPRIATLNNQKAVLKVGAEDFFVTNVSGGTTSSVTTGSTATLTMPSITLTPFFSGISLDV 459

Query: 319 TPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSY-------RVRKADTTVELPSGGTI 368
           TP +    +I L +    T VSE    ++ G   +Y        + + DT V +  G  +
Sbjct: 460 TPQIDEGTKIMLHVHPSVTTVSERAKQIDLGSAGNYVLPLASSSMNETDTLVRIQDGNIV 519

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            + GL++ +  +   G+P  S +P+   LF N      + E+ +     L+KP  +R
Sbjct: 520 AIGGLMQIESNRKSSGLPGTSDVPLFSTLFGNHANTGRKKEVVV-----LIKPTIIR 571


>gi|163757621|ref|ZP_02164710.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica
           DFL-43]
 gi|162285123|gb|EDQ35405.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica
           DFL-43]
          Length = 136

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I + ++   IL++   V  V++ +   ADV V  PRT+ L GK+ G  N++++  +G+ +
Sbjct: 35  IRVFMDHARILKLDRTVSKVIIGNAAVADVTVSDPRTIVLTGKSYGTTNLVILDQEGEAI 94

Query: 110 LNLDILIERDIAHLEMTLRRF 130
           ++  IL+  D A+   TLR F
Sbjct: 95  VDERILVSVDEAN---TLRVF 112


>gi|152988863|ref|YP_001351096.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa
           PA7]
 gi|150964021|gb|ABR86046.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa
           PA7]
          Length = 714

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 9/204 (4%)

Query: 219 ITGSSSGP------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           I G+ S P      S S   D G K  + G    +  + D    +  L A+E+      +
Sbjct: 502 IAGNCSFPTVGTNKSPSPFVDIGAKDATSG--IGIGFITDNIILDLQLSAMEKTGNGEII 559

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           ++P +     ++A    G +  Y+  SSS  ATS +  +  + L  TP +    RI + +
Sbjct: 560 SQPKVVTSDKETAKILKGSEVPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEV 618

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           +     P        +P     + +  + +  G TIV+ G+  ++  +  + +P L  +P
Sbjct: 619 KVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQTKAVDKVPFLGDLP 678

Query: 393 ILGALFRNSRFNREETEIFIAATP 416
            LG LFR       + E+ +   P
Sbjct: 679 YLGRLFRRDTVVDRKNELLVFLAP 702


>gi|218440223|ref|YP_002378552.1| type II and III secretion system protein [Cyanothece sp. PCC 7424]
 gi|218172951|gb|ACK71684.1| type II and III secretion system protein [Cyanothece sp. PCC 7424]
          Length = 734

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 7/70 (10%)

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T++L+G++ +  Q     +P+L  IPILGALFR +  +   +E+ +  TP ++     
Sbjct: 648 GQTLILSGIISESEQTTVSKVPILGDIPILGALFRRTDNSGSRSEVIVLLTPKIID---- 703

Query: 425 RDLSRPDDHY 434
               RPD  +
Sbjct: 704 ---DRPDSSW 710


>gi|167615580|ref|ZP_02384215.1| type III secretion system protein BsaO [Burkholderia thailandensis
           Bt4]
          Length = 351

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G      G+ + P        G  F + GG+ +    LD  
Sbjct: 94  QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 142

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +   T      T  YG 
Sbjct: 143 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 200

Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +     ++ + +  E        S+  I ++   MP     + +T   +P   
Sbjct: 201 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 260

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ +P++G LFR    +R E  + +    FL++P  +R
Sbjct: 261 SLLIGGNTRDDVTRRTFRIPGLASLPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 314


>gi|91782693|ref|YP_557899.1| putative type III secretion hypersensitivity response secretion
           protein, HrcC/HrpA1- like [Burkholderia xenovorans
           LB400]
 gi|91686647|gb|ABE29847.1| Putative type III secretion hypersensitivity response secretion
           protein, HrcC/HrpA1- like protein [Burkholderia
           xenovorans LB400]
          Length = 736

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           +HALE A   R L+ P +  ++   A  TS    +Y  V+ +     +   D G+ L  T
Sbjct: 427 IHALEDAGQARVLSSPQVLTLNNMEAVLTSH-SSVYVRVAGNQD-VDLYNIDTGLTLKVT 484

Query: 320 PTVLS---PGR-IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           P++ S   P R I L IQ +       ++   +P        T   +  G ++++ G   
Sbjct: 485 PSIESAADPRRNIRLNIQIDDGAFNTSMSVDGIPKVDNHSIVTQAIVRDGESLLVGGYQY 544

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  +     +P+L  +P LG LFR+++  RE  E  I  TP L +
Sbjct: 545 ERSESTTSKVPVLGDVPYLGVLFRDTQTTRERLERLILITPRLKR 589


>gi|145301440|ref|YP_001144279.1| AscC protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|66947980|emb|CAE83117.1| AscC protein [Aeromonas salmonicida subsp. salmonicida]
 gi|88698168|gb|ABD48952.1| AscC [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142856322|gb|ABO92531.1| AscC protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 617

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           YG +L  TP V+  G      + L I+    +P     A  +P+      DT   +  G 
Sbjct: 403 YGTMLRMTPRVIQMGDRPEISLSLHIEDGNQKPN-SAGADGIPTISRTVVDTIARVGHGQ 461

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G+ +D++ +    +P L  IP LGALFR+     ++T+   +   F+++P  + D
Sbjct: 462 SLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRS-----KDTQTRRSVRLFIIEPRLIDD 516


>gi|300867368|ref|ZP_07112024.1| type II and III secretion system protein [Oscillatoria sp. PCC
           6506]
 gi|300334619|emb|CBN57192.1| type II and III secretion system protein [Oscillatoria sp. PCC
           6506]
          Length = 810

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 15/174 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310
           F + L A  +    + L +PTL    G++A      Q +    + +T  T +T       
Sbjct: 605 FLSQLQAQIQTNNAKILTDPTLIVQEGETAGVNLTEQVITNITTQTTAGTGLTQQTVTAE 664

Query: 311 --DYGVVLHFTPTVLSP-GRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKADTTVEL 362
             + G+ L+   T +   G I +RI   V     + P +G N   +   R   +   + L
Sbjct: 665 KGNAGLTLNVEVTRIDDNGFISMRINPTVRAIARTSP-LGNNLISLLQERSLSSGL-IRL 722

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
             G T++++G++ D  +     IP+L  +PI+GALFR++  + +  E+ +  TP
Sbjct: 723 RDGQTLIVSGIINDTERVTASKIPILGDLPIIGALFRSTSKSNQRAEVIVLVTP 776


>gi|126456443|ref|YP_001075927.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1106a]
 gi|134282510|ref|ZP_01769214.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
 gi|167742975|ref|ZP_02415749.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 14]
 gi|167849982|ref|ZP_02475490.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei B7210]
 gi|167898588|ref|ZP_02485989.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 7894]
 gi|167915290|ref|ZP_02502381.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 112]
 gi|167923124|ref|ZP_02510215.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei BCC215]
 gi|242313713|ref|ZP_04812730.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
 gi|254186704|ref|ZP_04893220.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254194157|ref|ZP_04900589.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei S13]
 gi|254301616|ref|ZP_04969060.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|126230211|gb|ABN93624.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106a]
 gi|134246067|gb|EBA46157.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
 gi|157811506|gb|EDO88676.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|157934388|gb|EDO90058.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169650908|gb|EDS83601.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei S13]
 gi|242136952|gb|EES23355.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
          Length = 588

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + AL+  + ++  A P +  +    A   +  +   K    +S    SV+T   GV L  
Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P ++  G   RI + +     + + G    ++P     + +T   +  G ++++AG   
Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           D       G+P LSKIP+LGALFR    ++   E     +P ++ P
Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586


>gi|118579431|ref|YP_900681.1| type IV pilus secretin PilQ [Pelobacter propionicus DSM 2379]
 gi|118502141|gb|ABK98623.1| type IV pilus secretin PilQ [Pelobacter propionicus DSM 2379]
          Length = 864

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 14/200 (7%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVK-GVL-DRFSFETVLHALERATAIRTLAEPTLT 278
           G ++ P  S   D      S GG+  +  G L +    +  L A   A  I+ ++ P + 
Sbjct: 668 GITTAPPTSGTGD------SAGGNMGISFGALGNGVQLDMRLSAAATAGLIKIISCPKVA 721

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEV 336
            ++ + A    G Q  Y    +++   +V T   +  + L  TP + + G I + I  + 
Sbjct: 722 TLNNKKAKIAQGQQIPY----TASDGDNVETKFVEAALSLEVTPHINANGTISMNIVAKN 777

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                 V +   P+   ++A T + L  G T V+ G+  D       G+P L  IP +G 
Sbjct: 778 DSMGDAVGSSTAPAINTKEATTEMLLRDGETTVIGGIFVDTDNDSDAGVPFLMDIPAIGK 837

Query: 397 LFRNSRFNREETEIFIAATP 416
            F+ +   + +TE+ +  TP
Sbjct: 838 FFKTNSKTKTKTELLVFITP 857


>gi|145284361|gb|ABP51942.1| AscC [Aeromonas veronii bv. sobria]
          Length = 617

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           YG +L  TP V+  G      + L I+    +P     A  +P+      DT   +  G 
Sbjct: 403 YGTMLRMTPRVIQMGDRPEISLSLHIEDGNQKPN-SAGADGIPTISRTVVDTIARVGHGQ 461

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G+ +D++ +    +P L  IP LGALFR+     ++T+   +   F+++P  + D
Sbjct: 462 SLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRS-----KDTQTRRSVRLFIIEPRLIDD 516


>gi|126441183|ref|YP_001060902.1| Type II secretory pathway, component PulD [Burkholderia
           pseudomallei 668]
 gi|126220676|gb|ABN84182.1| type II secretory pathway, component PulD [Burkholderia
           pseudomallei 668]
          Length = 448

 Score = 44.3 bits (103), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 10/164 (6%)

Query: 234 FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
             G+     GD S      RF+    +  + AL   +  + ++ P +  +SG+      G
Sbjct: 261 LSGQLRVSSGDTSSDASAVRFTGPGVDAAISALNADSRFKVVSAPHVRIVSGERVRLNVG 320

Query: 291 GQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            Q   ++  S  G+T     S+T  D G++    PTV+    I L+++ E+S+ V     
Sbjct: 321 QQVPTQSSVSYQGSTGTPVQSITYQDAGLIFDVEPTVMR-EVIELKVREEISDFVATKTG 379

Query: 346 GDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            D  P+   R+  T   L  G  +VL GL++D     + G   L
Sbjct: 380 VDTSPTKNTRQLQTVTRLKDGEVVVLGGLIQDRNATARSGYAWL 423


>gi|237507548|ref|ZP_04520263.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
 gi|234999753|gb|EEP49177.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
          Length = 588

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + AL+  + ++  A P +  +    A   +  +   K    +S    SV+T   GV L  
Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P ++  G   RI + +     + + G    ++P     + +T   +  G ++++AG   
Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           D       G+P LSKIP+LGALFR    ++   E     +P ++ P
Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586


>gi|53722417|ref|YP_111402.1| type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|167820148|ref|ZP_02451828.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 91]
 gi|52212831|emb|CAH38865.1| putative type III secretion system protein [Burkholderia
           pseudomallei K96243]
          Length = 588

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + AL+  + ++  A P +  +    A   +  +   K    +S    SV+T   GV L  
Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P ++  G   RI + +     + + G    ++P     + +T   +  G ++++AG   
Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           D       G+P LSKIP+LGALFR    ++   E     +P ++ P
Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586


>gi|126445154|ref|YP_001062980.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 668]
 gi|126224645|gb|ABN88150.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 668]
          Length = 588

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + AL+  + ++  A P +  +    A   +  +   K    +S    SV+T   GV L  
Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P ++  G   RI + +     + + G    ++P     + +T   +  G ++++AG   
Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           D       G+P LSKIP+LGALFR    ++   E     +P ++ P
Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586


>gi|459551|gb|AAA16704.1| fimbrial assembly protein [Pseudomonas aeruginosa PAO1]
          Length = 727

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 11/208 (5%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
           TG+S  PS     D G K  + G   G  +   +LD    + V    +R    R +++P 
Sbjct: 524 TGTSKSPSPFV--DLGAKDATSGIGIGFITDNIILD---LQPVGDGKDRQR--RVVSQPK 576

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           +     ++A    G +  Y+  SSS  ATS +  +  + L  TP +    RI + ++   
Sbjct: 577 VVTSDKETAKILKGSEVPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKVTK 635

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
             P        +P     + +  + +  G TIV+ G+  ++  +  E +P L ++P LG 
Sbjct: 636 DAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLGELPYLGR 695

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAM 424
           LFR       + E+ +  TP ++   A+
Sbjct: 696 LFRRDTVTDRKNELLVFLTPRIMNNQAI 723


>gi|167840181|ref|ZP_02466865.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia thailandensis MSMB43]
          Length = 579

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 25/239 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++R+  L Q+G       ++ G    F    GG   +          LD  
Sbjct: 321 QIELSLWIIDIRKSRLDQLGIDWQGALNAPGIGVGFNNRGGGNVTT----------LDGT 370

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +      ++ P +       A+F S      K +     A  +    YG 
Sbjct: 371 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGER--AVQLDHVTYGT 428

Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +++  P +     ++ + +  E        S+  I V+   MP     + +T   +P   
Sbjct: 429 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVVDNNAMPLVNRTEINTVARVPREM 488

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++++ G  +DD+ +    IP L+ IP++G LFR    +R E  + +    FL++P  +R
Sbjct: 489 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 542


>gi|14719865|gb|AAK73229.1| SctC [Burkholderia pseudomallei]
          Length = 588

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + AL+  + ++  A P +  +    A   +  +   K    +S    SV+T   GV L  
Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P ++  G   RI + +     + + G    ++P     + +T   +  G ++++AG   
Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           D       G+P LSKIP+LGALFR    ++   E     +P ++ P
Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586


>gi|85060069|ref|YP_455771.1| type III secretion apparatus InvG [Sodalis glossinidius str.
           'morsitans']
 gi|45504769|gb|AAS66859.1| InvG [Sodalis glossinidius]
 gi|84780589|dbj|BAE75366.1| type III secretion apparatus InvG [Sodalis glossinidius str.
           'morsitans']
          Length = 546

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 13/109 (11%)

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           EVS       + D+P        T   +P G ++++ G  +D+++  +  +P L  IP++
Sbjct: 424 EVSRRQSNPGSDDLPEVGRTHISTVARVPRGKSLLIGGYTRDELRGNRARLPGLGSIPLI 483

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           G LFR+ R +++   + +    FL++P   R++S P     ++ DA AF
Sbjct: 484 GGLFRH-RIDKQANMVRV----FLIQP---REISEP-----LQQDAAAF 519


>gi|167724007|ref|ZP_02407243.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei DM98]
 gi|254183789|ref|ZP_04890381.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
 gi|184214322|gb|EDU11365.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
          Length = 588

 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + AL+  + ++  A P +  +    A   +  +   K    +S    SV+T   GV L  
Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P ++  G   RI + +     + + G    ++P     + +T   +  G ++++AG   
Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           D       G+P LSKIP+LGALFR    ++   E     +P ++ P
Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586


>gi|254418127|ref|ZP_05031851.1| general secretion pathway protein D [Brevundimonas sp. BAL3]
 gi|196184304|gb|EDX79280.1| general secretion pathway protein D [Brevundimonas sp. BAL3]
          Length = 718

 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 12/174 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLYKTVSSSTGATSVT 308
           F  +++A +       L  P++  +  + A+F  G       GQ L     +S   T+  
Sbjct: 471 FGFIINAAKTDKGSNLLQTPSIMTLDNEEATFLVGQEVPITTGQTLLD--GNSNPFTTTD 528

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGG 366
             D GV L   P + + G I L ++ EVS    G+  G  D+   + R+  TT+ +  G 
Sbjct: 529 RKDIGVRLTVKPQINAGGSITLTLRQEVSAINGGLTRGATDLVLDK-RELQTTLVVDDGD 587

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             V  GLL  +     + IP L  +P +GALFR++   R  T + +   P +V+
Sbjct: 588 IAVAGGLLDQNDIISTDKIPGLGDLPGVGALFRSNSRQRGRTNLMVFLRPTIVR 641


>gi|327538876|gb|EGF25517.1| general secretion pathway protein D [Rhodopirellula baltica WH47]
          Length = 1261

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 113/285 (39%), Gaps = 62/285 (21%)

Query: 196  VTLKVTIAEVRRD----ILKQIGFQHSI---TGSSSG------PSKSFAADFGG------ 236
            V +K  IAEVR D    I  + G Q S+    G ++G      P+     +FGG      
Sbjct: 765  VLIKTLIAEVRLDDGFEIGGEFGLQDSLLFDRGKATGAIATDNPASDPGFNFGGTNLPNS 824

Query: 237  ------KFVSEG--------------GDFSVKGVLDRFSFETV---LHALERATAIRTLA 273
                     S+G              G  +  G +   + E+V   L  L  A  ++ L+
Sbjct: 825  NSFGQESLASQGLTNFGATATQLTRVGGLNSGGFVFSAASESVNLFLRTLRVANRLQILS 884

Query: 274  EPTLTAISGQSASFTSGGQHLYKTVS---SSTGATS------VTTHDYGVVLHFTPTVLS 324
             P +   +  +  +   GQ+  +      +STG  S      +   D G++L  TP V +
Sbjct: 885  RPEIMT-ADNTEGYVQVGQNFPRPTELTFTSTGGNSTQPIIGIEDVDIGIILRVTPRVGA 943

Query: 325  PGRIGLRI-------QTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLL 374
             G I + I         +V + +   + GD   +P+     A  TV    G T+V  GL+
Sbjct: 944  DGMIFMAIDATRSAINNDVGQTIGSFDNGDPIFVPAIDTTTAQATVTAFDGQTVVFGGLI 1003

Query: 375  KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +   Q     +P L+ IP+LG  F+      + +E+ +  TP LV
Sbjct: 1004 QKYRQNRTSRVPYLADIPLLGTFFKYDSEIEQRSELLVVMTPILV 1048


>gi|327479223|gb|AEA82533.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri DSM
           4166]
          Length = 706

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 1/157 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E+      +++P +     ++A    G +  Y+  SSS  ATS +  +  + L  T
Sbjct: 539 LSAMEKTGNGEIVSQPKVVTADKETAKILKGAEIPYQEASSSG-ATSTSFKEAALSLEVT 597

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +    RI + ++     P        +P     + +  V +  G TIV+ G+  +   
Sbjct: 598 PQITPDNRIIMEVKVTKDAPDFANALNGVPPINKNEVNAKVLVTDGETIVIGGVFSNSQI 657

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              E +P L  +P +G LFR      +++E+ +  TP
Sbjct: 658 SSIEKVPFLGDVPFVGRLFRRDIVEDKKSELLVFLTP 694


>gi|91203965|emb|CAJ71618.1| hypothetical protein kustc0873 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 844

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 13/118 (11%)

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------------MPSYRVRKADTTVE 361
           V L  TP+V +   I     + +SE V  V  GD            +P   V +   TV 
Sbjct: 701 VYLEVTPSVFAIEEIESFTFSGLSEGV-SVGGGDGTTYIPPEQTIQLPKLNVSQVSVTVY 759

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +P  GT+++ GL     +    G+P+LSKIPI+  LF   +  R ++ + I   P ++
Sbjct: 760 VPDKGTLMIGGLGSLSNKDETSGVPVLSKIPIIKRLFTRDQKTRNKSNLIILLKPTII 817


>gi|19705376|ref|NP_602871.1| general secretion pathway protein D [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713363|gb|AAL94170.1| General secretion pathway protein D [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 402

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360
           G+++   P +     I L I  E+S+         +  +N+G   S    +V R   T V
Sbjct: 283 GLIMKVKPIIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 342

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++I
Sbjct: 343 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 394


>gi|113955379|ref|YP_731905.1| general secretion pathway protein D [Synechococcus sp. CC9311]
 gi|113882730|gb|ABI47688.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. CC9311]
          Length = 732

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 3/69 (4%)

Query: 353 VRKADT-TVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           VR+ DT ++ +  G T++L G++ D D QQ+++  P+L  +P++G  FR S  +R + E+
Sbjct: 637 VRRLDTGSLRVRDGQTLILTGVISDRDAQQVRK-WPILGDLPLIGQFFRESTRDRAKREL 695

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 696 VVLVTPKII 704


>gi|327538217|gb|EGF24896.1| protein containing Type II and III secretion system domain
           [Rhodopirellula baltica WH47]
          Length = 109

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 333 QTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           + EVSE      P + +N    P    R   TTV +  G TIV+ GL++ +       IP
Sbjct: 7   KAEVSEDVRNATPALSIN--QYPIINRRSVSTTVSVKDGKTIVIGGLVQRETVDRVNRIP 64

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            LS++P +G LF+ ++    + E+ I  +P +V+
Sbjct: 65  GLSRLPGVGYLFQTTQRQTRDAEVVIFISPRIVR 98


>gi|240949528|ref|ZP_04753868.1| type II secretory pathway, component HofQ [Actinobacillus minor
           NM305]
 gi|240296101|gb|EER46762.1| type II secretory pathway, component HofQ [Actinobacillus minor
           NM305]
          Length = 443

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 4/165 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+  ++  +A P L   + + AS   G +  Y      +    V   +  + L  T
Sbjct: 261 LSALEQENSVEIIASPRLLTTNKKLASIKQGTEIPYAIYDRKSETYDVEFKEAVLGLQVT 320

Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLK 375
           P +    +I + +   Q    + V+   + +   S   ++ +T V    G TIVL G+ +
Sbjct: 321 PHISKDNQILMDLVVTQNSQGQSVVSSTSDNAAVSIDKQELNTQVFAKHGETIVLGGIFQ 380

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               +  + +P+L  IP L  LF   +    + E+ I  TP++++
Sbjct: 381 HLKTKDSDRVPVLGSIPFLKHLFSYQKDQISKRELVIFVTPYIIQ 425


>gi|307149984|ref|YP_003885368.1| type II and III secretion system protein [Cyanothece sp. PCC 7822]
 gi|306980212|gb|ADN12093.1| type II and III secretion system protein [Cyanothece sp. PCC 7822]
          Length = 728

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T++L+G++ +  +     +P+L  IPILGALFR +  N   +E+ +  TP ++     
Sbjct: 642 GQTLILSGIISETERTTVTKVPILGDIPILGALFRRTDNNGNRSEVIVLLTPKIID---- 697

Query: 425 RDLSRPDDHYSV 436
               RPD  + +
Sbjct: 698 ---DRPDATFGI 706


>gi|54124974|gb|AAV30242.1| YscC [Aeromonas hydrophila]
          Length = 614

 Score = 43.9 bits (102), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 9/108 (8%)

Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365
           YG +L  TP V+  G      + L I+    +P   G++   +P+      DT   +  G
Sbjct: 403 YGTMLRMTPRVIQLGDRPEVSLSLHIEDGSQKPNSSGLDG--IPTISRTVVDTIARVGHG 460

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIFI 412
            ++++ G+ +D++ +    +P L  IP LGALFR+     R +  +FI
Sbjct: 461 QSLLIGGIYRDELSESLSKVPFLGDIPYLGALFRSKESQTRRQVRLFI 508


>gi|254508151|ref|ZP_05120276.1| fimbrial assembly protein [Vibrio parahaemolyticus 16]
 gi|219548873|gb|EED25873.1| fimbrial assembly protein [Vibrio parahaemolyticus 16]
          Length = 553

 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +R +    ++ P L   + + A    G +  Y   SSS+GAT+VT     + L  TP + 
Sbjct: 395 QRESKAEVISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVTPQIT 453

Query: 324 SPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  +   
Sbjct: 454 PDNRLVLDLNVTQDRPGDVVKTGTGEAVAINTQRIGTQVLVENGETVVLGGIFQHSVTDT 513

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +PLL  +P+LGALFR S     ++E+ I  TP +V
Sbjct: 514 VDKVPLLGDLPLLGALFRRSYQQMGKSELLIFVTPKVV 551


>gi|254422445|ref|ZP_05036163.1| Bacterial type II and III secretion system protein [Synechococcus
           sp. PCC 7335]
 gi|196189934|gb|EDX84898.1| Bacterial type II and III secretion system protein [Synechococcus
           sp. PCC 7335]
          Length = 702

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 23/178 (12%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L A  +++  + + +PTL    GQ+A+     Q   + V++ T  T + T + GV+
Sbjct: 504 FLAQLEASVQSSNAKIVTDPTLVIQEGQTAAV----QLTQEVVTNIT--TDIETTEVGVL 557

Query: 316 LHFT--------------PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT-- 359
              T                +   G + L +   +S P    N G   +  +     T  
Sbjct: 558 RTVTFEKEDAGLNLQVQIDRIDDNGFVTLAVAPSISAPTDTFNIGTEEAVLLANRQLTSG 617

Query: 360 -VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            + +  G T+VL+G++++  +     +P+L  IP+LGALFRNS       E+ +  TP
Sbjct: 618 QIRVRDGQTLVLSGIIQESDRNTVTKVPILGDIPLLGALFRNSDRENIRRELIVLLTP 675


>gi|74316224|ref|YP_313964.1| type IV pilus assembly protein PilQ [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055719|gb|AAZ96159.1| type IV pilus assembly protein PilQ [Thiobacillus denitrificans
           ATCC 25259]
          Length = 745

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           + L+ P +   + + A   +G Q  + T  ++    +VT  D  + L   P +L+   + 
Sbjct: 585 KILSNPRVMTSNQKPAVILNGTQIPFITPGTANSPATVTFKDAFLCLLVDPQILNNDALI 644

Query: 330 LRIQTEVSEPVIGVNAG---DM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + I+ +  + +   NA    D+  P+   R+  T V + +G T+VL G+         + 
Sbjct: 645 MTIEVQ-KDAIDTANAAVGADIIAPAIATRRIKTQVRVNNGETLVLGGIFDQTEFNNVDK 703

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +P L  +P LG LF+ +    ++TE+ +  TP ++
Sbjct: 704 VPFLGDVPGLGNLFKRTNKQDQKTEMIVFITPRIL 738


>gi|254250197|ref|ZP_04943517.1| Type II secretory pathway, component PulD [Burkholderia cenocepacia
           PC184]
 gi|124876698|gb|EAY66688.1| Type II secretory pathway, component PulD [Burkholderia cenocepacia
           PC184]
          Length = 463

 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%)

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           +P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  K 
Sbjct: 256 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNKS 315

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G+P LS IP++G LF+ +  +    E F   TP +V   +M
Sbjct: 316 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASM 356


>gi|206563896|ref|YP_002234659.1| type III secretion system protein [Burkholderia cenocepacia J2315]
 gi|18092668|gb|AAL59397.1| BcscC [Burkholderia cenocepacia]
 gi|28394249|gb|AAO31724.1| BcscC [Burkholderia cenocepacia]
 gi|198039936|emb|CAR55914.1| type III secretion system protein [Burkholderia cenocepacia J2315]
          Length = 681

 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%)

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           +P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  K 
Sbjct: 505 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKS 564

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G+P LS IP++G LF+ +  +    E F   TP +V   +M
Sbjct: 565 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTSASM 605


>gi|16330870|ref|NP_441598.1| general secretion pathway protein D [Synechocystis sp. PCC 6803]
 gi|1653364|dbj|BAA18278.1| general secretion pathway protein D [Synechocystis sp. PCC 6803]
          Length = 785

 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 16/180 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSAS--FTSGGQHLYKTVSSSTGATSVTT---- 309
           F+  + A  R+   + L +PTL    G++A    T        T   + G T+V T    
Sbjct: 573 FQAQIDAQIRSGNAKILTDPTLIVQEGEAAQVKLTESVIASVDTQVDTQGDTAVRTITPV 632

Query: 310 -HDYGVVLH-FTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYR-VRKADTT--- 359
             D G+ L+     +   G I LR+   V+ P    V    AG +     + K + T   
Sbjct: 633 LEDVGLTLNVIVDRIDDNGFITLRVNPIVASPAGTQVFDSGAGAINEITLINKRELTSGV 692

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V L    T +L+G++ +  +     +P+L  +P++GALFR S    + +E+ I  TP ++
Sbjct: 693 VRLRDDQTFILSGIISELQRSTTSKVPILGDLPVIGALFRQSTDTTDRSEVIILMTPKII 752


>gi|102227325|gb|ABF70182.1| AscC [Aeromonas hydrophila]
          Length = 614

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 9/108 (8%)

Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365
           YG +L  TP V+  G      + L I+    +P   G++   +P+      DT   +  G
Sbjct: 403 YGTMLRMTPRVIQLGDRPEVSLSLHIEDGNQKPNSSGLDG--IPTISRTVVDTIARVGHG 460

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIFI 412
            ++++ G+ +D++ +    +P L  IP LGALFR+     R +  +FI
Sbjct: 461 QSLLIGGIYRDELSESLSKVPFLGDIPYLGALFRSKESQTRRQVRLFI 508


>gi|149923951|ref|ZP_01912337.1| type IV pilus secretin PilQ [Plesiocystis pacifica SIR-1]
 gi|149815183|gb|EDM74732.1| type IV pilus secretin PilQ [Plesiocystis pacifica SIR-1]
          Length = 1125

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 3/161 (1%)

Query: 260  LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
            L A E    +R ++ P +  +    A    G Q     VS+    T       G  L  T
Sbjct: 959  LSAAENEGDVRIISAPKIVTLDNTEAQIEQGVQIPIAQVSAQGVNTRYVNATLG--LRVT 1016

Query: 320  PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            P V + G + L ++ + +E   +   A   P+   + A + + +  G T V+ G+   + 
Sbjct: 1017 PQVTNEGAVLLEVEVQKNEADFVNTGARGDPTILTKSARSQLLITDGDTAVIGGIYTRNQ 1076

Query: 379  QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                  +P  + IPI+G  F+N     + +E+ I  TP +V
Sbjct: 1077 AINHSKVPWFADIPIIGWFFKNRTERDDRSEMLIFLTPRIV 1117


>gi|289765568|ref|ZP_06524946.1| general secretion pathway protein D [Fusobacterium sp. D11]
 gi|289717123|gb|EFD81135.1| general secretion pathway protein D [Fusobacterium sp. D11]
          Length = 423

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360
           G+++   P +     I L I  E+S+         +  +N+G   S    +V R   T V
Sbjct: 304 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 363

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++I
Sbjct: 364 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 415


>gi|172063770|ref|YP_001811421.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia ambifaria MC40-6]
 gi|171996287|gb|ACB67205.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MC40-6]
          Length = 680

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%)

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           +P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  K 
Sbjct: 504 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKS 563

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G+P LS IP++G LF+ +  +    E F   TP +V   +M
Sbjct: 564 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTASM 604


>gi|296328369|ref|ZP_06870896.1| general secretion pathway protein D [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154548|gb|EFG95338.1| general secretion pathway protein D [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 515

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360
           G+++   P +     I L I  E+S+         +  +N+G   S    +V R   T V
Sbjct: 396 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 455

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++I
Sbjct: 456 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 507


>gi|217425412|ref|ZP_03456906.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
 gi|217391663|gb|EEC31691.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
          Length = 588

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + AL+  + ++  A P +  +    A   +  +   K    +S    SV+T   GV L  
Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P ++  G   RI + +     + + G    ++P     + +T   +  G ++++AG   
Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           D       G+P LSKIP+LGALFR    ++   E     +P ++ P
Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586


>gi|87123518|ref|ZP_01079369.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. RS9917]
 gi|86169238|gb|EAQ70494.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. RS9917]
          Length = 771

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADT-TVELPSGGTIVLAGLLKDDIQQL 381
           G I   +  E+S PV     G+  +  +   R  DT  + +  G T++L G++ D  +++
Sbjct: 648 GFITFALSPEISAPVGSEQVGNCGAITIINDRSLDTGKIRVRDGQTLILTGVINDTDREV 707

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
               P+L  +P +G  FR+S   R ++E+ I  TP ++
Sbjct: 708 VSKWPILGDLPFVGQFFRSSGGQRSKSELVILVTPRII 745


>gi|328469624|gb|EGF40560.1| putative type III secretion system EscC protein [Vibrio
           parahaemolyticus 10329]
          Length = 488

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 83/213 (38%), Gaps = 7/213 (3%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLD 252
           D+V L   IA +     +Q+ F   +   S+   + F  D      S G  D  V    +
Sbjct: 259 DEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGVYDLVVPPFSE 318

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F     AL      R + E  L A+  Q   F          +S+    T     D 
Sbjct: 319 TIDFLRNFQALASNGIARGVYETNLLALENQQGHFGKKQTATIALISNKQVETQKIEADN 378

Query: 313 GVVLHFTPTVLSPGRIGLRIQ----TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
              L+ T  +L  G +  RIQ    +   +     N+   P    +  ++ V +  G TI
Sbjct: 379 S--LYVTGRLLPSGDVQARIQYVEESLDDDEEDSDNSNRPPRVSSQSLNSEVYIKPGQTI 436

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +L G      QQ + GIP+LS IP+LG LF+++
Sbjct: 437 ILGGFDNTVTQQTESGIPVLSSIPLLGELFKST 469


>gi|256027610|ref|ZP_05441444.1| general secretion pathway protein D [Fusobacterium sp. D11]
          Length = 515

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360
           G+++   P +     I L I  E+S+         +  +N+G   S    +V R   T V
Sbjct: 396 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 455

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++I
Sbjct: 456 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 507


>gi|30524891|gb|AAP34336.1|AF499777_4 HrcC [Xanthomonas axonopodis pv. glycines]
          Length = 607

 Score = 43.5 bits (101), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 21/241 (8%)

Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSF------AADFGGKFVSEGG 243
           +  TI E+R   ++ +G       QH+   TG+ SG    F      AA  G    + G 
Sbjct: 371 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGNGSGSQLGFNGALSGAATDGATTPAGGT 430

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +V G   R+   T + ALE     + ++ P +  +    A      Q   +   S   
Sbjct: 431 LTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGYA 487

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTTV 360
           +  +     GV L   P+V+ PG     +R+   + +  +G N  D +P     +  T  
Sbjct: 488 SADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQA 546

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V 
Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606

Query: 421 P 421
           P
Sbjct: 607 P 607


>gi|88809802|ref|ZP_01125308.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 7805]
 gi|88786186|gb|EAR17347.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 7805]
          Length = 765

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 344 NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           N G++     R+ DT  + +  G T+VL G+++D   Q     P+L  IP +G  FR+S 
Sbjct: 663 NCGNISLINSRELDTGKIRVRDGQTLVLTGVIQDSDVQAVTKWPILGDIPFIGQFFRSSG 722

Query: 403 FNREETEIFIAATPFLV 419
            +R + E+ I  TP ++
Sbjct: 723 GSRTKRELVILVTPRII 739


>gi|260495319|ref|ZP_05815446.1| general secretion pathway protein D [Fusobacterium sp. 3_1_33]
 gi|260197097|gb|EEW94617.1| general secretion pathway protein D [Fusobacterium sp. 3_1_33]
          Length = 515

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360
           G+++   P +     I L I  E+S+         +  +N+G   S    +V R   T V
Sbjct: 396 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 455

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++I
Sbjct: 456 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 507


>gi|237741044|ref|ZP_04571525.1| general secretion pathway protein D [Fusobacterium sp. 4_1_13]
 gi|229431088|gb|EEO41300.1| general secretion pathway protein D [Fusobacterium sp. 4_1_13]
          Length = 423

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360
           G+++   P +     I L I  E+S+         +  +N+G   S    +V R   T V
Sbjct: 304 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 363

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++I
Sbjct: 364 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 415


>gi|107025868|ref|YP_623379.1| Type III secretion system outer membrane pore YscC/HrcC
           [Burkholderia cenocepacia AU 1054]
 gi|116692948|ref|YP_838481.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia cenocepacia HI2424]
 gi|105895242|gb|ABF78406.1| Type III secretion system outer membrane pore YscC/HrcC
           [Burkholderia cenocepacia AU 1054]
 gi|116650948|gb|ABK11588.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia cenocepacia HI2424]
          Length = 681

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%)

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           +P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  K 
Sbjct: 505 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNKS 564

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G+P LS IP++G LF+ +  +    E F   TP +V   +M
Sbjct: 565 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASM 605


>gi|170737787|ref|YP_001779047.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia cenocepacia MC0-3]
 gi|169819975|gb|ACA94557.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia cenocepacia MC0-3]
          Length = 681

 Score = 43.5 bits (101), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%)

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           +P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  K 
Sbjct: 505 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNKS 564

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G+P LS IP++G LF+ +  +    E F   TP +V   +M
Sbjct: 565 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASM 605


>gi|256846641|ref|ZP_05552097.1| general secretion pathway protein D [Fusobacterium sp. 3_1_36A2]
 gi|256717861|gb|EEU31418.1| general secretion pathway protein D [Fusobacterium sp. 3_1_36A2]
          Length = 515

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360
           G+++   P +     I L I  E+S+         +  +N+G   S    +V R   T V
Sbjct: 396 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 455

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++I
Sbjct: 456 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 507


>gi|113475300|ref|YP_721361.1| type II and III secretion system protein [Trichodesmium erythraeum
           IMS101]
 gi|110166348|gb|ABG50888.1| type II and III secretion system protein [Trichodesmium erythraeum
           IMS101]
          Length = 801

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           + L  G T++++G++++  +     +PLL  +PI+GALFR+S+   E  E  +  TP
Sbjct: 712 IRLRDGQTLIISGIIQEQERTAVTKVPLLGDLPIIGALFRSSQNQNERAETIVLLTP 768


>gi|302877407|ref|YP_003845971.1| type IV pilus secretin PilQ [Gallionella capsiferriformans ES-2]
 gi|302580196|gb|ADL54207.1| type IV pilus secretin PilQ [Gallionella capsiferriformans ES-2]
          Length = 705

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 4/162 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV-LHF 318
           L+A E     + +A P +       AS  SG +  Y T++ + G+   T      + L  
Sbjct: 541 LNASETDGITKNIASPRVVTADKTKASIKSGVEIPY-TIAGTVGSPPTTAFKTAALSLDV 599

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           TP +     I + +    S+  +G     +PS   +   T V + +GGT+V+ G+   D+
Sbjct: 600 TPRITPDNNINMTLV--ASQDTVGALYSGVPSINSKMVTTEVLIENGGTVVVGGVFTQDV 657

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                 +PLL  IP+LG +F+N      + E+ I  TP +++
Sbjct: 658 ADTVNKVPLLGDIPVLGWMFKNKVKTDAKNELLIFITPKIMQ 699


>gi|289524045|ref|ZP_06440899.1| putative bacterial type II/III secretion system short domain
           protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502701|gb|EFD23865.1| putative bacterial type II/III secretion system short domain
           protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 589

 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---- 327
           LA P++  + GQ AS        Y +     G    +    G  L FTP V   GR    
Sbjct: 418 LASPSVVTVDGQKASIALTTNIKYISERDDAGNPVYSEERVGPKLDFTPIV---GRDDTV 474

Query: 328 -IGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            I + I T EV E   G    ++P    R+  T V + +G   V+ GL           I
Sbjct: 475 TINVAISTGEVVEWRPGGMGEEVPVTSSREVTTMVRVRNGEPFVIGGLFDRRKTDTVSKI 534

Query: 386 PLLSKIPILGALFRNSRFNRE 406
           P+L+ IP+LG +F+ +R  R+
Sbjct: 535 PVLADIPLLGEIFK-TRTKRD 554


>gi|153836074|ref|ZP_01988741.1| VcsC2 [Vibrio parahaemolyticus AQ3810]
 gi|149750828|gb|EDM61573.1| VcsC2 [Vibrio parahaemolyticus AQ3810]
          Length = 487

 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 4/142 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
             AL      R++ E  L A+  Q + F          +S     T     D    L+ T
Sbjct: 327 FQALYSNGIARSVYETNLVALENQQSQFGKKQTATLTLISDKQVKTEKIEADNS--LYVT 384

Query: 320 PTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             +L  G++  RIQ   E  +     ++   P    +  ++ V +    T++L G     
Sbjct: 385 GRLLPSGQVQARIQYVEEALDEDDNEDSNRPPRVSSQSLNSEVYIQPNQTVILGGFDNTV 444

Query: 378 IQQLKEGIPLLSKIPILGALFR 399
            QQ + G+P++S IP+LG LF+
Sbjct: 445 TQQQESGVPIISSIPLLGELFK 466


>gi|134294019|ref|YP_001117755.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia vietnamiensis G4]
 gi|134137176|gb|ABO58290.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia vietnamiensis G4]
          Length = 679

 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%)

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           +P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  K 
Sbjct: 504 TPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKS 563

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G+P LS IP++G LF+ +  +    E F   TP +V   +M
Sbjct: 564 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASM 604


>gi|237743199|ref|ZP_04573680.1| general secretion pathway protein D [Fusobacterium sp. 7_1]
 gi|229433495|gb|EEO43707.1| general secretion pathway protein D [Fusobacterium sp. 7_1]
          Length = 423

 Score = 43.5 bits (101), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360
           G+++   P +     I L I  E+S+         +  +N+G   S    +V R   T V
Sbjct: 304 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 363

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++I
Sbjct: 364 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 415


>gi|34762860|ref|ZP_00143844.1| General secretion pathway protein D [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887468|gb|EAA24554.1| General secretion pathway protein D [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 423

 Score = 43.5 bits (101), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360
           G+++   P +     I L I  E+S+         +  +N+G   S    +V R   T V
Sbjct: 304 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 363

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++I
Sbjct: 364 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 415


>gi|17228526|ref|NP_485074.1| general secretion pathway protein D [Nostoc sp. PCC 7120]
 gi|17130377|dbj|BAB72988.1| general secretion pathway protein D [Nostoc sp. PCC 7120]
          Length = 823

 Score = 43.5 bits (101), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           + L  G T++L+G+++D  +     IP+L  IP++G+LFR +    E  E+ +  TP
Sbjct: 732 IRLRDGQTLILSGIIQDQDRTSVSKIPILGDIPLIGSLFRKTNRTNERREVIVLLTP 788


>gi|38639336|gb|AAR25802.1| BcscC [Burkholderia multivorans E243]
          Length = 504

 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%)

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP++G LF+
Sbjct: 344 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 403

Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424
            +  +    E F   TP +V   +M
Sbjct: 404 YTDKSGNHMERFYLLTPRVVSSASM 428


>gi|329901079|ref|ZP_08272701.1| Type III secretion outermembrane pore forming protein
           (YscC,MxiD,HrcC, InvG) [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549244|gb|EGF33826.1| Type III secretion outermembrane pore forming protein
           (YscC,MxiD,HrcC, InvG) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 432

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 21/223 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-SEGGDFSVKG---- 249
           Q+ ++  I ++ R  L Q+G +   T  S       +A F G    S+G    + G    
Sbjct: 69  QIEIEALIVDIDRSQLNQLGAEWGFTAGS------VSATFNGMSTDSKGASLPISGSTLL 122

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
           + +  +F   L+A+E     R LA+ T++ +   +A            V        +  
Sbjct: 123 IKNAANFYAKLNAMENKGDARILAKQTISTLENIAAVLDLSQSRYLPLVGER--VVDLAN 180

Query: 310 HDYGVVLHFTPTVLSPGRIG-LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE--LPSGG 366
            + G +L  TP ++  G +  +R+   + +     +A    S  V ++  T +  +    
Sbjct: 181 VNVGTMLKVTPRIVREGPLTRVRLDINIEDGAFSADAAS--STNVTRSTITTQAIIEPQH 238

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN---SRFNRE 406
           T+++ G   +   Q ++ IP+L  IP+ G LF+N   S  NRE
Sbjct: 239 TLLIGGYHSEAKTQSRQKIPVLGDIPVFGGLFQNNSDSVNNRE 281


>gi|170698153|ref|ZP_02889232.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
 gi|170136918|gb|EDT05167.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
          Length = 619

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 16/207 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ L + I ++++  L Q+G        S+  S SF           G D S    LD  
Sbjct: 370 QIQLSLWIIDIKKSCLDQLGVNWQGVFGSNRISGSF----------NGADNST--TLDGP 417

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL++      ++ P L       A F +      K +     A S+    YG 
Sbjct: 418 KFLVSVMALQQKGDATIVSRPVLLTQENMPAVFDNNQTFYAKLIGER--AVSLEHVTYGT 475

Query: 315 VLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAG 372
           +++  P +   G  + +++  E        +A   +P     + DT   +P   ++++ G
Sbjct: 476 MINVLPRLTDNGSEVEMQVDVEDGNATDTNDAASPLPLVDRTEIDTVARVPREKSLLIGG 535

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFR 399
             +DD ++ +  IP L+ +P++G LFR
Sbjct: 536 NTRDDARRHRYRIPGLASLPLIGGLFR 562


>gi|161520290|ref|YP_001583717.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia multivorans ATCC 17616]
 gi|189353532|ref|YP_001949159.1| putative type II secretory pathway [Burkholderia multivorans ATCC
           17616]
 gi|160344340|gb|ABX17425.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans ATCC 17616]
 gi|189337554|dbj|BAG46623.1| putative type II secretory pathway [Burkholderia multivorans ATCC
           17616]
          Length = 678

 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%)

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP++G LF+
Sbjct: 518 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 577

Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424
            +  +    E F   TP +V   +M
Sbjct: 578 YTDKSGNHMERFYLLTPRVVSSASM 602


>gi|298489848|ref|YP_003720025.1| type II and III secretion system protein ['Nostoc azollae' 0708]
 gi|298231766|gb|ADI62902.1| type II and III secretion system protein ['Nostoc azollae' 0708]
          Length = 818

 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           + L  G T++L+G+++D  +     +P+L  IP+LG+LFR +    E  E+ +  TP
Sbjct: 726 LRLRDGQTLILSGIIQDQDRTTISKLPILGDIPLLGSLFRKTNRQNERREVIVLLTP 782


>gi|221200554|ref|ZP_03573596.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD2M]
 gi|221206234|ref|ZP_03579248.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD2]
 gi|221174246|gb|EEE06679.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD2]
 gi|221179895|gb|EEE12300.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD2M]
          Length = 678

 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%)

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP++G LF+
Sbjct: 518 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 577

Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424
            +  +    E F   TP +V   +M
Sbjct: 578 YTDKSGNHMERFYLLTPRVVSSASM 602


>gi|146305583|ref|YP_001186048.1| type IV pilus secretin PilQ [Pseudomonas mendocina ymp]
 gi|145573784|gb|ABP83316.1| type IV pilus secretin PilQ [Pseudomonas mendocina ymp]
          Length = 706

 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 1/165 (0%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E+      +++P +     ++A    G +  Y+  SSS  ATS +  +  + L  T
Sbjct: 539 LSAMEKTGNGEIVSQPKVVTSDKETAKILKGQEVPYQEASSSG-ATSTSFKEAALALEVT 597

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +    RI + ++     P        +P     + +  V +  G TIV+ G+  +   
Sbjct: 598 PQITPDNRIIMEVKVTKDAPDFANLVNGVPPLNKNEVNAKVLVNDGETIVIGGVFSNTQT 657

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
              E +P L  +P LG +FR       + E+ +  TP ++   A+
Sbjct: 658 NAVEKVPFLGDLPFLGRVFRRDIVRDNKAELLVFITPRIMNNQAI 702


>gi|221209590|ref|ZP_03582571.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD1]
 gi|221170278|gb|EEE02744.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD1]
          Length = 678

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%)

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP++G LF+
Sbjct: 518 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 577

Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424
            +  +    E F   TP +V   +M
Sbjct: 578 YTDKSGNHMERFYLLTPRVVSSASM 602


>gi|213419653|ref|ZP_03352719.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 173

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 14/134 (10%)

Query: 312 YGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           YG ++   P   + G+I + +       +T  S+    V+A  +P        T   +P 
Sbjct: 17  YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVPH 74

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G ++++ G  +D      + IP+L K+P++G+LFR S  N+           F+++P  +
Sbjct: 75  GKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN-----VVRVFMIEPKEI 129

Query: 425 RDLSRPDDHYSVED 438
            D   PD   SV +
Sbjct: 130 VDPLTPDASESVNN 143


>gi|237750361|ref|ZP_04580841.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229373891|gb|EEO24282.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 756

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 20/170 (11%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG-----QHLYKTVSSSTGATSVTTH 310
            +++ + L     +R+L+ P + A++ Q A  + G      Q+L    +++      T+ 
Sbjct: 577 LQSIFNLLRTYGDLRSLSNPKIMALNNQPALISVGSVLRYTQNLVYQSNNTNTTIQNTST 636

Query: 311 DY-----GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDM----PSYRVRKADT 358
            Y     G++L  TP++ S   + LRI    T+  +P +  NA +     P+    +  +
Sbjct: 637 QYPSVFAGILLDITPSI-SHDSVILRINPSITKTKDPDME-NAAEALKAPPNLSTNQLSS 694

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREE 407
            V+L  G  +++ GLL + +Q   + IP + +   L  +F + SR NR E
Sbjct: 695 IVKLKDGERVIIGGLLNNVVQNTSQAIPKIGENKWLKNIFGKQSRTNRSE 744


>gi|294784349|ref|ZP_06749640.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27]
 gi|294487921|gb|EFG35276.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27]
          Length = 127

 Score = 43.1 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++I
Sbjct: 61  RGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 119


>gi|229529211|ref|ZP_04418601.1| hypothetical protein VCG_002304 [Vibrio cholerae 12129(1)]
 gi|229332985|gb|EEN98471.1| hypothetical protein VCG_002304 [Vibrio cholerae 12129(1)]
          Length = 489

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 6/158 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
             AL      R++ E  L A+  Q   F          +S+    T     D    L+ T
Sbjct: 327 FQALYTNGIARSVYETNLLALENQQGQFGKKQTATLTLISNREVKTEKIEADNS--LYVT 384

Query: 320 PTVLSPGRIGLRIQ-TEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLK 375
             +L  G++  RIQ  E +    G N+      P    +  ++ V +  G T++L G   
Sbjct: 385 GRLLPSGQVQARIQYVEEALDDEGENSDGSQRPPRVSSQSLNSEVYIQPGQTVILGGFDN 444

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
              QQ + G+P+LS IP+LG LF+ +  ++ + + +++
Sbjct: 445 TVTQQQESGVPVLSSIPLLGELFKYTSESKHKYKRYVS 482


>gi|171319944|ref|ZP_02909020.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
 gi|171094800|gb|EDT39838.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
          Length = 679

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%)

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           +P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  K 
Sbjct: 504 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKS 563

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G+P LS IP++G LF+ +  +    E F   TP +V   +M
Sbjct: 564 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTASM 604


>gi|145589562|ref|YP_001156159.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047968|gb|ABP34595.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 759

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 6/156 (3%)

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           + +A PTLTA+    ++F SG                +T    GV L  TPT +    + 
Sbjct: 512 QVIARPTLTALDRIPSTFYSGAVITAGLNGGGVSGAQITNIPTGVSLSVTPTFVDEESMM 571

Query: 330 LRIQTEVSEPVIGVNAG-----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           L ++   S  V   NAG        S         V++  G T++L GL    +  L++G
Sbjct: 572 LAVKVSRSY-VTSQNAGYGGFNASVSQDQHAVTANVKIKYGETLILDGLSSRAVSGLQDG 630

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P+L  IPI+   F   +  +    + +  TP  V+
Sbjct: 631 VPVLQDIPIIQYFFNQKQQQQYSENVVVLVTPRKVQ 666


>gi|260221518|emb|CBA30162.1| hypothetical protein Csp_C22170 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 520

 Score = 43.1 bits (100), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 28/208 (13%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---- 297
           GG F +   L    F  VL  LE    ++TL+ P +  ++ Q A    G    + T    
Sbjct: 284 GGLFGL--ALATSQFGAVLGFLETQGDVQTLSSPRVATLNNQKAVLKVGTDEFFVTNVSG 341

Query: 298 ------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ------TEVSEP 339
                        +S+    ++T    G+ L  TP +     + L +       TE S+ 
Sbjct: 342 GTNSSSGTSSSTTTSTLPTVTLTPFFSGISLDVTPQIDDGVNVTLHVHPSLTTVTEKSKQ 401

Query: 340 VIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           +   +AG+    + S  V + DT V +  G  + + GL++ +  +   GIP  + +P LG
Sbjct: 402 IDLGSAGNFKLPLASSAVNETDTLVRIQDGSIVAIGGLMQLESSRNASGIPGTTSMPGLG 461

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVA 423
           ALF N      + E+ +   P +++  A
Sbjct: 462 ALFGNRATQGRKKEVIVLIKPTIIRTAA 489


>gi|317968183|ref|ZP_07969573.1| general (type II) secretion pathway protein D precursor
           [Synechococcus sp. CB0205]
          Length = 729

 Score = 43.1 bits (100), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 345 AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            G + +   R+ DT  V +  G T++L G++ D  Q +    P+L  IP +G  FR+S  
Sbjct: 628 CGTVNTLTTRRLDTGEVRVRDGQTLILTGVISDYDQAVVRKWPVLGDIPFVGQFFRDSIN 687

Query: 404 NREETEIFIAATPFLVK 420
            RE+ E+ I  +P +++
Sbjct: 688 RREKRELVILVSPRIIR 704


>gi|186685099|ref|YP_001868295.1| type II and III secretion system protein [Nostoc punctiforme PCC
           73102]
 gi|186467551|gb|ACC83352.1| type II and III secretion system protein [Nostoc punctiforme PCC
           73102]
          Length = 792

 Score = 43.1 bits (100), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 37/58 (63%)

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           ++ L  G T++L+G+++D  +     IP+L  +P++G+LFR++  + +  E+ +  TP
Sbjct: 700 SIRLRDGQTLILSGIIQDSDRTTVSKIPILGDLPLIGSLFRSTNRSNQRNEVIVLLTP 757


>gi|315499170|ref|YP_004087974.1| type II and iii secretion system protein [Asticcacaulis excentricus
           CB 48]
 gi|315417182|gb|ADU13823.1| type II and III secretion system protein [Asticcacaulis excentricus
           CB 48]
          Length = 543

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P LTA  G+ + F  G     K        + +   D G  +  TP  ++  R  LR
Sbjct: 323 VARPMLTAYRGEPSDFFVG--RSTKVAVKGVNFSQLENIDIGTQVKVTPVEITSDRTRLR 380

Query: 332 IQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I+   S    EP    N   + ++R +   TTVE+  G T++L+GL +          PL
Sbjct: 381 IEVTRSFLSGEPAGNFNEA-LNTWR-QTVSTTVEVRFGTTLILSGLSESVRDSSVTKTPL 438

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           +   P++G+ F     N+    + +  TP   + +  +  SR  D
Sbjct: 439 IGDAPLIGSGFNRRVTNQRRDAVLVLVTPSPARVMESQGWSRQAD 483


>gi|327251623|gb|EGE63309.1| hypothetical protein ECSTEC7V_3473 [Escherichia coli STEC_7v]
          Length = 505

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 244 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 289

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 290 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 347

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   S  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 348 YGTMISVLPRFASRNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 407

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 408 IGGYTRDTNTYESRKIPILGSIPFIGKLF 436


>gi|194292010|ref|YP_002007917.1| sctc: non flagellar t3S system conserved protein. gsp d family
           [Cupriavidus taiwanensis LMG 19424]
 gi|193225914|emb|CAQ71861.1| SctC: non flagellar T3S system conserved protein. GSP D family
           [Cupriavidus taiwanensis LMG 19424]
          Length = 580

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%)

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P  R R   T   +  G ++++AG   ++      G+PLL  +PI+G LF+     +  
Sbjct: 504 IPVVRRRSITTQAMVEEGKSLLIAGYTTEEKINASSGVPLLQDVPIIGNLFKYQEKRQNN 563

Query: 408 TEIFIAATPFLVKP 421
            E F   TP LV P
Sbjct: 564 MERFYLLTPRLVIP 577


>gi|167621192|ref|ZP_02389823.1| Type II secretory pathway, component PulD [Burkholderia
           thailandensis Bt4]
          Length = 400

 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 14/166 (8%)

Query: 234 FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           +GGK     G         RFS    +  + AL+  +  R +++P +  +SG+      G
Sbjct: 213 WGGKLSLSNGATDADPTALRFSSSMLDVAISALDADSRFRQISDPHVRVVSGERVRLNVG 272

Query: 291 GQ-----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---G 342
            Q      +     S T   SV   D G++    P V+    + +R+  ++S  V    G
Sbjct: 273 AQVPTLGSISYQGQSGTPVQSVEYQDAGLIFDVQPVVMG-DVVQVRLAEQLSSFVTTTTG 331

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           VN  + P+   R+  T V +  G  +VL GL++D     +  I  L
Sbjct: 332 VN--NSPTKNTREMSTVVNMKDGEVVVLGGLVQDQDTSSRNSIGWL 375


>gi|323978511|gb|EGB73593.1| YscC/HrcC family protein type III secretion outer membrane pore
           [Escherichia coli TW10509]
          Length = 567

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   S  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 410 YGTMISVLPRFASRNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498


>gi|323966662|gb|EGB62094.1| YscC/HrcC family protein type III secretion outer membrane pore
           [Escherichia coli M863]
          Length = 567

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   S  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 410 YGTMISVLPRFASRNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498


>gi|83647801|ref|YP_436236.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC
           2396]
 gi|83635844|gb|ABC31811.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC
           2396]
          Length = 615

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 38/72 (52%)

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P  +    +T   +  G ++++ G  +D   +   G+PLL  IP+LGALFR +  NR++
Sbjct: 449 IPVIKTSSINTQTVVGLGQSLLIGGFFQDYESESVGGVPLLKDIPLLGALFRTTNHNRKK 508

Query: 408 TEIFIAATPFLV 419
                  TP ++
Sbjct: 509 MVKLFLMTPKII 520


>gi|254254350|ref|ZP_04947667.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
 gi|124898995|gb|EAY70838.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%)

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP++G LF+
Sbjct: 519 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 578

Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424
            +  +    E F   TP +V   +M
Sbjct: 579 YTDKSGNHMERFYLLTPRVVTNASM 603


>gi|21241188|ref|NP_640770.1| HrcC protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21106496|gb|AAM35306.1| HrcC protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 607

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 21/241 (8%)

Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSF------AADFGGKFVSEGG 243
           +  TI E+R   ++ +G       QH+   TG+ SG    F      AA  G    + G 
Sbjct: 371 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGNGSGGQLGFNGALSGAATDGATTPAGGT 430

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +V G   R+   T + ALE     + ++ P +  +    A      Q   +   S   
Sbjct: 431 LTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGYA 487

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTTV 360
           +  +     GV L   P+V+ PG     +R+   + +  +G N  D +P     +  T  
Sbjct: 488 SADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQA 546

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V 
Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606

Query: 421 P 421
           P
Sbjct: 607 P 607


>gi|28901194|ref|NP_800849.1| putative type III secretion system EscC protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260362753|ref|ZP_05775622.1| protein VcsC2 [Vibrio parahaemolyticus K5030]
 gi|260880041|ref|ZP_05892396.1| protein VcsC2 [Vibrio parahaemolyticus AN-5034]
 gi|260895158|ref|ZP_05903654.1| protein VcsC2 [Vibrio parahaemolyticus Peru-466]
 gi|28809707|dbj|BAC62682.1| putative type III secretion system EscC protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308085690|gb|EFO35385.1| protein VcsC2 [Vibrio parahaemolyticus Peru-466]
 gi|308092233|gb|EFO41928.1| protein VcsC2 [Vibrio parahaemolyticus AN-5034]
 gi|308112426|gb|EFO49966.1| protein VcsC2 [Vibrio parahaemolyticus K5030]
          Length = 487

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
             AL      R++ E  L A+  Q + F          +S     T     D    L+ T
Sbjct: 327 FQALYSNGIARSVYETNLVALENQQSQFGKKQTATLTLISDKQVKTEKIEADNS--LYVT 384

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKD 376
             +L  G++  RIQ  V E +   +  D    P    +  ++ V +    T++L G    
Sbjct: 385 GRLLPSGQVQARIQY-VEESLDEDDNEDSNRPPRVSSQSLNSEVYIQPNQTVILGGFDNT 443

Query: 377 DIQQLKEGIPLLSKIPILGALFR 399
             QQ + G+P++S IP+LG LF+
Sbjct: 444 VTQQQESGVPIISSIPLLGELFK 466


>gi|157163960|ref|YP_001466804.1| type II and III secretion system protein [Campylobacter concisus
           13826]
 gi|112801256|gb|EAT98600.1| bacterial type II and III secretion system protein [Campylobacter
           concisus 13826]
          Length = 380

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 14/213 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           +QVT K+TI E     +K +G   Q  +   + G    +       +++      +K   
Sbjct: 155 EQVTFKLTITETNLKDIKDLGTNLQGLLKPLNHGDLAYYINLITSPYITNSN--VIKN-- 210

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVT 308
           D  +F  +L+ L+     + ++ P LTA +     F+S     Y   KT  S+       
Sbjct: 211 DDSAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTD 270

Query: 309 THDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +++Y   G+ ++  P +LS   I   +   + E ++  ++   P    ++  ++  L  G
Sbjct: 271 SYEYKDIGLKINLKPIILS-DHIDFDLHL-ILEDILSQSSSLTPIVSKKELKSSYSLKRG 328

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             +VL+G+ K    + + G+P+L  I +L  LF
Sbjct: 329 DVLVLSGINKKTTAKQRNGVPVLKDIWLLKYLF 361


>gi|220922544|ref|YP_002497846.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060]
 gi|219947151|gb|ACL57543.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060]
          Length = 217

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + I    V I  VP  + DVLV +   ADV + S R + +  K  G+ N+IL+G + K +
Sbjct: 52  LRINAGSVEIFAVPEPMSDVLVGESRIADVAIISDRRIAVTAKAPGRTNIILMGENRKLL 111

Query: 110 LNLDILI 116
             LD+L+
Sbjct: 112 SKLDVLV 118


>gi|83859353|ref|ZP_00952874.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852800|gb|EAP90653.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 146

 Score = 42.7 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 50/85 (58%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           AA++    + + + ++  +  ++  ++++P D   V+V +P  AD +++  RT+++ GK 
Sbjct: 8   AALVMTLGLGVAQAREFVVTADQAGLIRLPGDASGVIVGNPGIADAMLYDSRTLFVTGKV 67

Query: 94  VGQANVILIGHDGKQMLNLDILIER 118
            G+ N+I++   G+ +   D+++ +
Sbjct: 68  FGRTNLIVLDEAGRVLYTSDLVVTQ 92


>gi|254430712|ref|ZP_05044415.1| general secretion pathway protein D [Cyanobium sp. PCC 7001]
 gi|197625165|gb|EDY37724.1| general secretion pathway protein D [Cyanobium sp. PCC 7001]
          Length = 849

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 353 VRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           VR+ DT  V +  G T++L G++ D  + +    P+L  IP++G  FR++   +E+ E+ 
Sbjct: 754 VRRLDTGAVRVRDGQTLILTGVISDFDRSVVSKWPILGDIPLIGQFFRSTSNQKEKRELV 813

Query: 412 IAATPFLVK 420
           I  TP ++ 
Sbjct: 814 IMVTPRIIN 822


>gi|89111175|dbj|BAE80264.1| HrcC [Acidovorax avenae subsp. avenae]
          Length = 683

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 31/230 (13%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V L+ TI EV  D +  +G   S+   +S    S A +  G         S    L    
Sbjct: 448 VELEATIIEVNSDSVDALGVNWSLRAGTS----SIATNLPGP--------STPAALSTIV 495

Query: 256 FETVLH------ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            +   H      ALE     R L++P++  ++ ++A          K V++   A ++  
Sbjct: 496 LDAGRHLLANVNALEAQGKARILSKPSVLGVANRAAVMRE------KRVATVRVAGNLEA 549

Query: 310 H----DYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELP 363
           +    + G +L  TP V +  G+  +++   + +     N  D +P  +  +  T   + 
Sbjct: 550 NLFQIEAGTLLQMTPQVTAVEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVR 609

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS-RFNREETEIFI 412
            G ++++ G+  +        +P LSK+P++G +FRN+ R  R    +F+
Sbjct: 610 EGESLLIGGITVESENTQDNAVPGLSKLPVVGGVFRNTERLTRRTERLFL 659


>gi|326315361|ref|YP_004233033.1| type III secretion outer membrane pore, YscC/HrcC family
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372197|gb|ADX44466.1| type III secretion outer membrane pore, YscC/HrcC family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 683

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 31/230 (13%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V L+ TI EV  D +  +G   S+   +S    S A +  G         S    L    
Sbjct: 448 VELEATIIEVNSDSVDALGVNWSLRAGTS----SIATNLPGP--------STPAALSTIV 495

Query: 256 FETVLH------ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            +   H      ALE     R L++P++  ++ ++A          K V++   A ++  
Sbjct: 496 LDAGRHLLANVNALEAQGKARILSKPSVLGVANRAAVMRE------KRVATVRVAGNLEA 549

Query: 310 H----DYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELP 363
           +    + G +L  TP V +  G+  +++   + +     N  D +P  +  +  T   + 
Sbjct: 550 NLFQIEAGTLLQMTPQVTAVEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVR 609

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS-RFNREETEIFI 412
            G ++++ G+  +        +P LSK+P++G +FRN+ R  R    +F+
Sbjct: 610 EGESLLIGGITVESENTQDNAVPGLSKLPVVGGVFRNTERLTRRTERLFL 659


>gi|254253701|ref|ZP_04947018.1| type II and III secretion system protein [Burkholderia dolosa
           AUO158]
 gi|124898346|gb|EAY70189.1| type II and III secretion system protein [Burkholderia dolosa
           AUO158]
          Length = 620

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHF 318
           + AL++  A +  A P +  ++   A   +  Q        ++G   SV+T   G+ L  
Sbjct: 459 ISALQQTKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRV 515

Query: 319 TPTVLSP-GRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            P V+   GR  +++   + +  +      ++P  +    +T   +  G  +++AG   D
Sbjct: 516 LPMVVEEDGRTRIKLDVAIQDGQLTDQTVSNLPVIQNSTINTQAFIEEGQALLIAGYRAD 575

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                  G+P LSKIP++GALFR     +   E     +P ++ P
Sbjct: 576 SATMGVTGVPGLSKIPLIGALFRTDNRQKSHMERLFLLSPRVISP 620


>gi|221271462|dbj|BAH15014.1| putative type III secretion system apparatus protein VscC2 [Vibrio
           parahaemolyticus]
          Length = 488

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 83/213 (38%), Gaps = 7/213 (3%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLD 252
           D+V L   IA +     +Q+ F   +   S+   ++F  D      S G  D  V    +
Sbjct: 259 DEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKENFGVDSSWVNGSRGVYDLVVPPFTE 318

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F     AL      R + E  L  +  Q   F          +S+    T     D 
Sbjct: 319 TIDFLRNFQALASNGIARGVYETNLLVLENQQGHFGKKQTATIALISNRQVETQKIEADN 378

Query: 313 GVVLHFTPTVLSPGRIGLRIQ----TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
              L+ T  +L  G +  RIQ    +   +     N+   P    +  ++ V +  G TI
Sbjct: 379 S--LYVTGRLLPSGDVQARIQYIEESLDDDEEDSDNSNRPPRVSSQSLNSEVYIKPGQTI 436

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +L G      QQ + GIP+LS IP+LG LF+++
Sbjct: 437 ILGGFDNTVTQQTESGIPVLSSIPLLGELFKST 469


>gi|332091472|gb|EGI96557.1| general secretion pathway protein D domain protein [Shigella boydii
           3594-74]
          Length = 93

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           +L  TP +     + + I+ EVS+ V G  + D+  +  RK  TTV    G  IVL GL+
Sbjct: 1   MLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIVLGGLM 58

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            D   +    +PLL  IP++G LF+++   +E
Sbjct: 59  DDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 90


>gi|329847987|ref|ZP_08263015.1| bacterial type II and III secretion system family protein
           [Asticcacaulis biprosthecum C19]
 gi|328843050|gb|EGF92619.1| bacterial type II and III secretion system family protein
           [Asticcacaulis biprosthecum C19]
          Length = 545

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P LTA  G+ A F  G     K   +    + + T D G  +  TP  ++    G R
Sbjct: 325 VARPMLTAYRGEPADFFVG--RSAKVAVTGVNFSQLETIDIGTQIKVTPVEITA--TGTR 380

Query: 332 IQTEVSEPVI-GVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           ++ EV+   + G  AG+    + ++R +   TTVE+  G T++L+GL +          P
Sbjct: 381 LRIEVTRSFLSGEPAGNFNESLNTWR-QTVSTTVEVAFGTTLILSGLSESVRDSSTTKTP 439

Query: 387 LLSKIPILGALFRNSRFNREETE-IFIAATPFLVKPVAMRDLSRP 430
           L+  +P++G+ F N R   ++ + + +  TP      A    +RP
Sbjct: 440 LVGDVPVVGSAF-NRRITTDKRDAVLVLVTPSPSMAFAGPQWARP 483


>gi|218706369|ref|YP_002413888.1| protein invG [Escherichia coli UMN026]
 gi|293406360|ref|ZP_06650286.1| invG [Escherichia coli FVEC1412]
 gi|293412219|ref|ZP_06654942.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B354]
 gi|298382096|ref|ZP_06991693.1| type III secretion protein SctC [Escherichia coli FVEC1302]
 gi|300896248|ref|ZP_07114795.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 198-1]
 gi|331674348|ref|ZP_08375108.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli TA280]
 gi|62085071|gb|AAX62936.1| putative type III secretion apparatus protein [Escherichia coli]
 gi|218433466|emb|CAR14368.1| Protein invG precursor [Escherichia coli UMN026]
 gi|284922811|emb|CBG35899.1| type III secretion system protein [Escherichia coli 042]
 gi|291426366|gb|EFE99398.1| invG [Escherichia coli FVEC1412]
 gi|291468990|gb|EFF11481.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B354]
 gi|298277236|gb|EFI18752.1| type III secretion protein SctC [Escherichia coli FVEC1302]
 gi|300359869|gb|EFJ75739.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 198-1]
 gi|331068442|gb|EGI39837.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli TA280]
          Length = 567

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   S  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 410 YGTMISVLPRFASRNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498


>gi|89111142|dbj|BAE80232.1| HrcC [Acidovorax avenae subsp. avenae]
          Length = 683

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 31/230 (13%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V L+ TI EV  D +  +G   S+   +S    S A +  G         S    L    
Sbjct: 448 VELEATIIEVNSDSVDALGVNWSLRAGTS----SIATNLPGP--------STPAALSTIV 495

Query: 256 FETVLH------ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            +   H      ALE     R L++P++  ++ ++A          K V++   A ++  
Sbjct: 496 LDAGRHLLANVNALEAQGKARILSKPSVLGVANRAAVMRE------KRVATVRVAGNLEA 549

Query: 310 H----DYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELP 363
           +    + G +L  TP V +  G+  +++   + +     N  D +P  +  +  T   + 
Sbjct: 550 NLFQIEAGTLLQMTPQVTAVEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVR 609

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS-RFNREETEIFI 412
            G ++++ G+  +        +P LSK+P++G +FRN+ R  R    +F+
Sbjct: 610 EGESLLIGGITVESENTQDNAVPGLSKLPVVGGVFRNTERLTRRTERLFL 659


>gi|34498087|ref|NP_902302.1| invasion protein - outer membrane [Chromobacterium violaceum ATCC
           12472]
 gi|34103942|gb|AAQ60302.1| invasion protein - outer membrane [Chromobacterium violaceum ATCC
           12472]
          Length = 561

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 28/245 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            V L + I ++++D L Q+G   S  GS +  +K       G  +++ G  S    LD  
Sbjct: 303 HVELSLWIIDLQKDDLDQLGVNWS--GSVTVGNKL------GVTLNQAGSLST---LDGT 351

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD--Y 312
            F   + A+        ++ P +       A F +  +  Y  +    G  SV      Y
Sbjct: 352 RFLAAVMAMTSKKKANVVSRPVVLTQENIPAIFDNN-RTFYAKLE---GERSVDLQHVTY 407

Query: 313 GVVLHFTPTVLSPGRIGLRIQTE----VSEPVIGVNAGD--MPSYRVRKADTTVELPSGG 366
           G ++   P   + G+I + +  E       P    +  D  +P     +  T   +P G 
Sbjct: 408 GTLISVLPRFAADGQIEMSLSIEDGSQARAPDYSSDNKDAGLPEVGRTRISTVARVPQGK 467

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G  +D  ++ +  +PLL  +P++G LFR     +  T        FL++P  + D
Sbjct: 468 SLLIGGFTRDASERGEGKVPLLGDLPLVGGLFRYQSAKQTNT-----VRVFLIQPREIDD 522

Query: 427 LSRPD 431
              PD
Sbjct: 523 ALTPD 527


>gi|171317904|ref|ZP_02907080.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
 gi|171096911|gb|EDT41783.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
          Length = 460

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 20/211 (9%)

Query: 214 GFQHSITGSSSGPSK-SFAAD-FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATA 268
           G+ + +T + S  S  S AA   GG+     GD S      RF+    +  + AL   + 
Sbjct: 251 GWAYEVTNTDSANSAWSIAAKVLGGQLRISSGDTSSDSSAVRFTGPGIDAAISALNADSR 310

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVL 323
            + ++ P +   SG+      G Q   ++      SS T   S+T  D G++    PTV+
Sbjct: 311 FKVISSPHVRIASGEKVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVM 370

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
               I LR+  E+S+ V      D  P+   R+  T   L  G  +VL GL++D     +
Sbjct: 371 RDA-IELRVHEEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGEVVVLGGLIQDRNATAR 429

Query: 383 EGIPLLSKIPILGALFRNSR-FNREETEIFI 412
            G   L         F + R  +++ TE+ +
Sbjct: 430 SGYAWLPS-------FLDGRSSSKQRTEVLL 453


>gi|149177451|ref|ZP_01856055.1| hypothetical protein PM8797T_19156 [Planctomyces maris DSM 8797]
 gi|148843784|gb|EDL58143.1| hypothetical protein PM8797T_19156 [Planctomyces maris DSM 8797]
          Length = 1668

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 363  PSGGTIVLAGLLKDDIQQLKE-----GIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            P GGT++L G     +++L+E     G+P+L+K+P +  LF+N+   RE   + +  TP 
Sbjct: 1600 PDGGTVLLGG-----VKRLREGRSMAGVPILNKLPYVSRLFKNTGVGRETESLMMMVTPR 1654

Query: 418  LV 419
            ++
Sbjct: 1655 II 1656


>gi|148240700|ref|YP_001226087.1| general secretory pathway protein D [Synechococcus sp. WH 7803]
 gi|147849239|emb|CAK24790.1| General secretory pathway protein D [Synechococcus sp. WH 7803]
          Length = 773

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 344 NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNS 401
           N G++     R  DT  + +  G T++L G++ D D+Q + +  P+L  IP +G  FR+S
Sbjct: 671 NCGNINIINSRTLDTGKIRVRDGQTLILTGVISDTDVQAVTK-WPILGDIPFIGQFFRSS 729

Query: 402 RFNREETEIFIAATPFLV 419
             +R + E+ I  TP ++
Sbjct: 730 SGDRTKNELVILVTPRII 747


>gi|281355619|ref|ZP_06242113.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281318499|gb|EFB02519.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 540

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 7/102 (6%)

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL-PSGGTIVLAGLLKDDIQQLKEGIPLL 388
           L++  E S  +IG ++   P     + +T V++  SG   V+ GL K DI +   G+PLL
Sbjct: 406 LKLHAE-SVSLIGWDSSGEPRLNKSEIETEVQIGNSGKNFVIGGLRKFDIVRGVAGVPLL 464

Query: 389 SKIPILGALFRNSRFNREETEIFIAA-----TPFLVKPVAMR 425
             +P+LG LF     + ++++I I A     TPF   P  ++
Sbjct: 465 KDLPLLGWLFSTESESTKKSQIVILASAEYSTPFDPVPTEIQ 506


>gi|167032058|ref|YP_001667289.1| general secretion pathway protein D [Pseudomonas putida GB-1]
 gi|166858546|gb|ABY96953.1| general secretion pathway protein D [Pseudomonas putida GB-1]
          Length = 584

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 14/147 (9%)

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ   F +G      T +++    ++   + GV L   P +     + L I  EVS    
Sbjct: 402 GQEVPFVTGS----VTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIAD 457

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN- 400
              A D+ + + R+  T V +   G ++L GL+ D++    + +PLL  IP LG LFR+ 
Sbjct: 458 SSAASDVITNK-REIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYLGRLFRSD 516

Query: 401 -SRFNREETEIFIAATPFLVKPVAMRD 426
            S+  ++   +FI       +P  +RD
Sbjct: 517 ASKNTKQNLMVFI-------RPRILRD 536


>gi|325529072|gb|EGD06072.1| putative type II secretory pathway [Burkholderia sp. TJI49]
          Length = 220

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 49/101 (48%)

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           +P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D++   K 
Sbjct: 45  NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGRSLLIAGFNDDEVHLNKS 104

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G+P LS IP++G LF+ +  +    E F   TP +V   +M
Sbjct: 105 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVSTASM 145


>gi|254412671|ref|ZP_05026444.1| Bacterial type II and III secretion system protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180406|gb|EDX75397.1| Bacterial type II and III secretion system protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 979

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 35/57 (61%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           + L  G T++L+G++++  +     +P+L  +PILGALFR++    +  E+ +  TP
Sbjct: 887 IRLRDGQTLILSGIIQESDRTTVRKVPILGDLPILGALFRSTERQNQRQEVIVLLTP 943


>gi|284009077|emb|CBA76056.1| general secretion pathway protein D [Arsenophonus nasoniae]
          Length = 221

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 5/153 (3%)

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            G    S GG F   G+         L A++     + L+ P +  +SGQ+    +G + 
Sbjct: 74  LGDILSSSGGSF---GIFSGNVLGLALTAVQGDKHSKLLSVPRILTLSGQNVPIVTG-KI 129

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
           + + V       ++   D G+ L  TP VL+   + L ++++        NA D+  +  
Sbjct: 130 IGQGVDVKNPFQTIERRDVGISLDVTPVVLNGDSVMLTVKSKADSVSNISNATDIV-FNQ 188

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           R  DTTV+L +G T+++ GL++ +       +P
Sbjct: 189 RSIDTTVQLKNGDTLLIGGLIQHNAVNSTSSVP 221


>gi|187736127|ref|YP_001878239.1| type II and III secretion system protein [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187426179|gb|ACD05458.1| type II and III secretion system protein [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 833

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 17/136 (12%)

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGG 366
           +YG  L F P V          + +  E V+ V   D     P +  R+    V + +G 
Sbjct: 697 NYGTSL-FVPMVSQ--------EKDAKEEVVMVKTSDNFILQPVFSTRRLTAPVRIATGN 747

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR- 425
           T+V+  L K      ++ IP+L  IP +G LFR+     +   I I     +V P   + 
Sbjct: 748 TLVIGALKKSTSITYEDKIPVLGDIPWVGRLFRSKGSKEQRKAIIIMVKAEVVDPGGKKL 807

Query: 426 ---DLSRPDDHYSVED 438
              D S PDD     D
Sbjct: 808 YTPDTSIPDDEVPAGD 823


>gi|256829756|ref|YP_003158484.1| type IV pilus secretin PilQ [Desulfomicrobium baculatum DSM 4028]
 gi|256578932|gb|ACU90068.1| type IV pilus secretin PilQ [Desulfomicrobium baculatum DSM 4028]
          Length = 693

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 18/182 (9%)

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           GKF+ E          D F+ +  L   E    ++T++ P +  ++   A    G +   
Sbjct: 526 GKFLGE----------DLFALDAALQLGEANNLVKTISSPRILTLNNNRAEIQQGTKLAT 575

Query: 296 KTVSSSTGATSVTTHDYGVV-LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            T S S G T  T ++  V+ +   P +    ++ L ++     P       D      +
Sbjct: 576 ATESESGGTT--TEYEEAVLKISVLPQITPDNKLILDLEISDDSP-----KSDGRDIDTK 628

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  T + +    TIV+ G+ K         IP L  +P LG LF+N+   + + E+ I  
Sbjct: 629 QTKTKMMVSDRETIVIGGVQKTTETSNTNQIPGLGDVPGLGWLFKNTYDAKSKAELLIFI 688

Query: 415 TP 416
            P
Sbjct: 689 QP 690


>gi|320667142|gb|EFX34105.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O157:H7 str. LSU-61]
          Length = 505

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 244 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 289

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 290 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 347

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   +  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 348 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 407

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 408 IGGYTRDTNTYESRKIPILGSIPFIGKLF 436


>gi|270637582|ref|ZP_06222100.1| competence protein E [Haemophilus influenzae HK1212]
 gi|270317386|gb|EFA28906.1| competence protein E [Haemophilus influenzae HK1212]
          Length = 90

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 9   NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 68

Query: 417 FLVK 420
            ++K
Sbjct: 69  HILK 72


>gi|258545349|ref|ZP_05705583.1| type IV pilus secretin PilQ [Cardiobacterium hominis ATCC 15826]
 gi|258519452|gb|EEV88311.1| type IV pilus secretin PilQ [Cardiobacterium hominis ATCC 15826]
          Length = 111

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V + +G TIVL G+ K       E +PLL  IP++G  F+ +    E+ E+ I  TP 
Sbjct: 34  TNVLVDNGETIVLGGVYKQRQTAKTEKVPLLGDIPVIGNAFKKNTRAFEKNEMLIFVTPR 93

Query: 418 LV 419
           +V
Sbjct: 94  IV 95


>gi|330883499|gb|EGH17648.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 98

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           SG T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++
Sbjct: 12  SGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI 67


>gi|325921916|ref|ZP_08183727.1| HrcC protein [Xanthomonas gardneri ATCC 19865]
 gi|325547618|gb|EGD18661.1| HrcC protein [Xanthomonas gardneri ATCC 19865]
          Length = 606

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 6/167 (3%)

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
           T + ALE+    + ++ P +  +    A      Q   +   S   A  +     GV L 
Sbjct: 443 TRVSALEQTDKAKIVSTPQVATLDNVEAVMDHKQQAFVRV--SGYAAADLYNLSAGVSLR 500

Query: 318 FTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLL 374
             P+V+ PG     +R+   + +  +G N  D +P     +  T   +  G ++++AG  
Sbjct: 501 VLPSVV-PGSPNGQMRLDVRIEDGQLGANTVDGIPVITSSEITTQAFVNEGQSLLIAGYA 559

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +D  Q     +P LSKIP++G LF++ + +    +     TP +V P
Sbjct: 560 QDTDQTDLNKVPGLSKIPLVGNLFKHRQKSGSRLQRLFLLTPHIVSP 606


>gi|15803397|ref|NP_289430.1| type III secretion apparatus protein [Escherichia coli O157:H7
           EDL933]
 gi|15832987|ref|NP_311760.1| EivG [Escherichia coli O157:H7 str. Sakai]
 gi|168747661|ref|ZP_02772683.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4113]
 gi|168753799|ref|ZP_02778806.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4401]
 gi|168759989|ref|ZP_02784996.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4501]
 gi|168766854|ref|ZP_02791861.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4486]
 gi|168775738|ref|ZP_02800745.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4196]
 gi|168778875|ref|ZP_02803882.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4076]
 gi|168785707|ref|ZP_02810714.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC869]
 gi|168799994|ref|ZP_02825001.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC508]
 gi|195936479|ref|ZP_03081861.1| EivG [Escherichia coli O157:H7 str. EC4024]
 gi|208807740|ref|ZP_03250077.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208812874|ref|ZP_03254203.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821461|ref|ZP_03261781.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209395847|ref|YP_002272337.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4115]
 gi|217327396|ref|ZP_03443479.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. TW14588]
 gi|254794814|ref|YP_003079651.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226174|ref|ZP_05940455.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256572|ref|ZP_05949105.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12517375|gb|AAG57989.1|AE005515_11 type III secretion apparatus protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13363205|dbj|BAB37156.1| type III secretion protein EivG [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768795|gb|EDU32639.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4196]
 gi|188017811|gb|EDU55933.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4113]
 gi|189003611|gb|EDU72597.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4076]
 gi|189358709|gb|EDU77128.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4401]
 gi|189363622|gb|EDU82041.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4486]
 gi|189369391|gb|EDU87807.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4501]
 gi|189373912|gb|EDU92328.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC869]
 gi|189377689|gb|EDU96105.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC508]
 gi|208727541|gb|EDZ77142.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208734151|gb|EDZ82838.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741584|gb|EDZ89266.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209157247|gb|ACI34680.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4115]
 gi|217319763|gb|EEC28188.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. TW14588]
 gi|254594214|gb|ACT73575.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|320640504|gb|EFX10043.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O157:H7 str. G5101]
 gi|320645751|gb|EFX14736.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O157:H- str. 493-89]
 gi|320651051|gb|EFX19491.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O157:H- str. H 2687]
          Length = 567

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   +  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498


>gi|326423830|ref|NP_760303.2| type IV pilus biogenesis protein PilQ [Vibrio vulnificus CMCP6]
 gi|319999200|gb|AAO09830.2| Type IV pilus biogenesis protein PilQ [Vibrio vulnificus CMCP6]
          Length = 594

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +R +    ++ P L   + + A    G +  Y   SSS+GAT+V+     + L  TP + 
Sbjct: 436 QRESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVTPQIT 494

Query: 324 SPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              R+ L +      P  ++    G+  +   ++  T V + +G T+VL G+ +  I   
Sbjct: 495 PDNRLVLDLSVTQDRPGEIVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNT 554

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +PLL  +P+LGALFR S  N  + E+ I  TP ++
Sbjct: 555 TDKVPLLGDLPLLGALFRRSYENVGKRELLIFVTPKVI 592


>gi|76574829|gb|ABA47303.1| HrcC [Pseudomonas cichorii]
          Length = 672

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 10/197 (5%)

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +++ + +FG   ++ G         DRF  +  + ALE       +A P++  +  Q A 
Sbjct: 324 ARAGSVNFGSSLLTGGSATLSINDFDRFFAD--IQALEGQGVASVIARPSVLTLENQPAV 381

Query: 287 FT-SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIG 342
              S   ++  T        SVT    G  L   P  ++   P R  L I  E  + +  
Sbjct: 382 IDFSRTAYITATGERVANVQSVTA---GTSLQVIPRTIAGAQPSRFQLIIDIEDGQ-LDR 437

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
              G+ P  +     T   +    ++V+ G   D+  Q  + +PLL  +P+LG+LF + R
Sbjct: 438 SRDGETPDVKRGTVSTQAVISENRSLVIGGFHVDETGQHHDKVPLLGDLPVLGSLFTSKR 497

Query: 403 FNREETEIFIAATPFLV 419
                 E     TP L+
Sbjct: 498 QEVSRRERLFILTPRLI 514


>gi|37681174|ref|NP_935783.1| type IV pilus (Tfp) assembly protein PilQ [Vibrio vulnificus YJ016]
 gi|37199925|dbj|BAC95754.1| type IV pilus (Tfp) assembly protein PilQ [Vibrio vulnificus YJ016]
          Length = 594

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +R +    ++ P L   + + A    G +  Y   SSS+GAT+V+     + L  TP + 
Sbjct: 436 QRESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVTPQIT 494

Query: 324 SPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              R+ L +      P  ++    G+  +   ++  T V + +G T+VL G+ +  I   
Sbjct: 495 PDNRLVLDLSVTQDRPGEIVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNT 554

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +PLL  +P+LGALFR S  N  + E+ I  TP ++
Sbjct: 555 TDKVPLLGDLPLLGALFRRSYENVGKRELLIFVTPKVI 592


>gi|115360614|ref|YP_777751.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia ambifaria AMMD]
 gi|115285942|gb|ABI91417.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria AMMD]
          Length = 561

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHF 318
           + AL+   A +  A P +  ++   A   +  Q        ++G   SV+T   G+ L  
Sbjct: 400 ISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRV 456

Query: 319 TPTVLSP-GRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            P V+   GR  +++   + +  +      ++P  +    +T   +  G  +++AG   D
Sbjct: 457 LPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFIEEGQALLIAGYRAD 516

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                  G+P LSKIP++GALFR     +   E     +P ++ P
Sbjct: 517 SATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 561


>gi|531740|emb|CAA56979.1| xcpQ [Pseudomonas putida]
          Length = 591

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 9/75 (12%)

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN--SRFNREETEIF 411
           R+  T V +   G ++L GL+ D++    + +PLL  IP LG LFR+  S+  ++   +F
Sbjct: 473 REIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYLGRLFRSDASKNTKQNLMVF 532

Query: 412 IAATPFLVKPVAMRD 426
           I       +P  +RD
Sbjct: 533 I-------RPRILRD 540


>gi|320656547|gb|EFX24443.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
          Length = 567

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   +  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498


>gi|320155169|ref|YP_004187548.1| type IV pilus biogenesis protein PilQ [Vibrio vulnificus MO6-24/O]
 gi|319930481|gb|ADV85345.1| type IV pilus biogenesis protein PilQ [Vibrio vulnificus MO6-24/O]
          Length = 594

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +R +    ++ P L   + + A    G +  Y   SSS+GAT+V+     + L  TP + 
Sbjct: 436 QRESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVTPQIT 494

Query: 324 SPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              R+ L +      P  ++    G+  +   ++  T V + +G T+VL G+ +  I   
Sbjct: 495 PDNRLVLDLSVTQDRPGEIVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNT 554

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +PLL  +P+LGALFR S  N  + E+ I  TP ++
Sbjct: 555 TDKVPLLGDLPLLGALFRRSYENVGKRELLIFVTPKVI 592


>gi|291284183|ref|YP_003501001.1| putative type III secretion apparatus protein [Escherichia coli
           O55:H7 str. CB9615]
 gi|290764056|gb|ADD58017.1| Putative type III secretion apparatus protein [Escherichia coli
           O55:H7 str. CB9615]
          Length = 567

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   +  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498


>gi|257453318|ref|ZP_05618617.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R]
 gi|317059850|ref|ZP_07924335.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R]
 gi|313685526|gb|EFS22361.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R]
          Length = 435

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 99/249 (39%), Gaps = 20/249 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           K+M  ++I G+ QV +   I ++ +D+  ++GF       S   +K   A  G + V   
Sbjct: 180 KLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEESVGNS 238

Query: 243 GDF--SVKGVLDRFSFET-----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G    S   ++ +FS  T      L  LE    ++  + P++    G    F    + + 
Sbjct: 239 GPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITEEVIV 298

Query: 296 KTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PVIGVN 344
                     S +      + G++L   P +     + L I  E+S+            N
Sbjct: 299 GEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNHKKDWN 358

Query: 345 AGDMPSYRV-RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                  ++ R   T + + +   I++ GL +   +  +  +P LS IP LG LF++   
Sbjct: 359 FNSQGGSKIGRSLSTRIHVKNKEMILIGGLSRFTRRNTENKVPFLSDIPGLGYLFKSESK 418

Query: 404 NREETEIFI 412
              ET+++I
Sbjct: 419 KDAETDMYI 427


>gi|293416115|ref|ZP_06658755.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B185]
 gi|291432304|gb|EFF05286.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B185]
          Length = 567

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   +  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498


>gi|331654358|ref|ZP_08355358.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli M718]
 gi|331047740|gb|EGI19817.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli M718]
          Length = 567

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   +  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498


>gi|170698370|ref|ZP_02889444.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
 gi|170136709|gb|EDT04963.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
          Length = 589

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHF 318
           + AL+   A +  A P +  ++   A   +  Q        ++G   SV+T   G+ L  
Sbjct: 428 ISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRV 484

Query: 319 TPTVLSP-GRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            P V+   GR  +++   + +  +      ++P  +    +T   +  G  +++AG   D
Sbjct: 485 LPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFIEEGQALLIAGYRAD 544

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                  G+P LSKIP++GALFR     +   E     +P ++ P
Sbjct: 545 SATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 589


>gi|167575154|ref|ZP_02368028.1| putative bacteriophage-related lipoprotein [Burkholderia
           oklahomensis C6786]
          Length = 446

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 16/207 (7%)

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRT 271
           ++ + TGS++           G+     GD +      RF+    +  + AL   +  + 
Sbjct: 240 YEVANTGSANSAWSIAVRLLSGQLRLSSGDTASDTSAMRFTGPGVDAAISALNADSRFKV 299

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPG 326
           ++ P +  +SG+      G Q   ++  S  G+      S+T  D G++    PTV+   
Sbjct: 300 VSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQDAGLIFDVEPTVMR-D 358

Query: 327 RIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            I L+++ E+S+ V      D  P+   R+  T   L  G  +VL GL++D     + G 
Sbjct: 359 VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDATARSGY 418

Query: 386 PLLSKIPILGALFRNSRFNREETEIFI 412
             L       + F     +++ TE+ +
Sbjct: 419 SWLP------SFFDGRSSSKQRTEVLL 439


>gi|320662066|gb|EFX29467.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O55:H7 str. USDA 5905]
          Length = 567

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   +  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498


>gi|119489367|ref|ZP_01622147.1| general secretion pathway protein D [Lyngbya sp. PCC 8106]
 gi|119454640|gb|EAW35786.1| general secretion pathway protein D [Lyngbya sp. PCC 8106]
          Length = 800

 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T++++G++++  +     IP L  +PILGALFR+S       E+ +  TP ++
Sbjct: 715 IRLRDGQTLIVSGIIQEQDRVTASKIPFLGDLPILGALFRSSTRETGRAEVVVLVTPMIM 774


>gi|239833241|ref|ZP_04681570.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG
           3301]
 gi|239825508|gb|EEQ97076.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG
           3301]
          Length = 139

 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
           +P +  A  AVI ++         +     +++ L  P D   V++ +P+ AD VV   +
Sbjct: 14  VPAMGAAFMAVIAVAQASAEDYIALETSQARILRLARPAD--SVVIGNPSIADAVVQDAQ 71

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           T+ L GK+ G  N++++   G+ +L+ ++++ R+
Sbjct: 72  TIVLTGKDFGVTNIVVMDKQGEPILDRELVVSRN 105


>gi|319795612|ref|YP_004157252.1| type III secretion outer membrane pore, yscc/hrcc family
           [Variovorax paradoxus EPS]
 gi|315598075|gb|ADU39141.1| type III secretion outer membrane pore, YscC/HrcC family
           [Variovorax paradoxus EPS]
          Length = 613

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 313 GVVLHFTPTVLSP--GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIV 369
           G  +  TP ++    GR G+ +  ++ +  +   A D +P  R R  +T   +  G +++
Sbjct: 478 GTAVRVTPLIIDEKTGR-GVMMSIDIVDGDVSTQAVDRIPIVRRRSVNTQALVDEGASLL 536

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +AG   ++      G+PLL  +P +G LF+ S   +   E F   TP LV P
Sbjct: 537 IAGYSSEERANAVTGVPLLKDLPGVGNLFKYSDKKQVNMERFYLLTPRLVSP 588


>gi|188534044|ref|YP_001907841.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
 gi|188029086|emb|CAO96954.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
          Length = 592

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 27/216 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--D 252
           Q+ L + I ++ +  + ++G + S                 GK  + G  F+   +   +
Sbjct: 333 QIQLSLWIIDISKKEINELGVKWS---------------GAGKVNNTGVTFNTSSLTPEN 377

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F   + AL ++ + + ++ P +       A F +      K +   T +    T  Y
Sbjct: 378 SIHFLADVSALVKSGSAQVISRPEILTQENVPALFDNNSSFYAKLIGERTSSLEKIT--Y 435

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-------GDMPSYRVRKADTTVELPSG 365
           G ++   P  L+ G+  + +   + +  + +NA         MP+    +  T   +P G
Sbjct: 436 GTMISVLPR-LATGQQEIEMILNIHDGTVPLNAQGEPDKFDSMPTTSNTQISTEARVPLG 494

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            ++++ G  +D  +Q   G+PLL  IP LG +F  S
Sbjct: 495 HSLLVGGYSRDQDEQHNIGVPLLRDIPYLGRIFNYS 530


>gi|207857100|ref|YP_002243751.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206708903|emb|CAR33233.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           +  + + V I +V    + Q+G       S  G  K  A + G   +++GG      V+ 
Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310
           D  +F   L+ALE+++    L++P++  ++   A          K          S+TT 
Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
             G +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G 
Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++L G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486


>gi|224437102|ref|ZP_03658083.1| hypothetical protein HcinC1_04000 [Helicobacter cinaedi CCUG 18818]
          Length = 602

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 39/202 (19%), Positives = 81/202 (40%), Gaps = 31/202 (15%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG---------- 291
            GDF++       S   ++  L+    +++++ P +  ++ Q A  + G           
Sbjct: 310 NGDFAISIFSQGVSINRIVEFLQTYGKVQSVSNPKVLTLNNQPAIISVGSVLRYFQNTTY 369

Query: 292 ---------QHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
                    Q+L +T  S         + +  +  ++L   P++     I +  QT   E
Sbjct: 370 QTTTQGTSIQNLSQTFPSVFAGILLDVTPSVKNDKIILKINPSITKTKDISIENQTTALE 429

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                     P+   ++  + V++  G  IVL GL+     Q+   +P+L  IP++  LF
Sbjct: 430 --------SPPNLSTKQLSSLVQVKDGEKIVLGGLIDKTEGQILRKLPILGDIPLIKYLF 481

Query: 399 RNSRFNREETEIFIAATPFLVK 420
              +  +E  E+ I  +P +V+
Sbjct: 482 SYKKNIKETQEMVIIISPHIVR 503


>gi|331664433|ref|ZP_08365339.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli TA143]
 gi|331058364|gb|EGI30345.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli TA143]
          Length = 567

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   +  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498


>gi|294665979|ref|ZP_06731242.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604227|gb|EFF47615.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 607

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%)

Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +  TI E+R   ++ +G       QH+   TG   G    F     G   ++G    V G
Sbjct: 371 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVGG 429

Query: 250 VL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            L        R+   T + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 430 TLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359
            +  +     GV L   P+V+ PG     +R+   + +  +G N  D +P     +  T 
Sbjct: 487 ASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQ 545

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V
Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 605

Query: 420 KP 421
            P
Sbjct: 606 SP 607


>gi|159024044|gb|ABW87272.1| HrcC [Xanthomonas fuscans subsp. fuscans]
          Length = 607

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%)

Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +  TI E+R   ++ +G       QH+   TG   G    F     G   ++G    V G
Sbjct: 371 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVGG 429

Query: 250 VL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            L        R+   T + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 430 TLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359
            +  +     GV L   P+V+ PG     +R+   + +  +G N  D +P     +  T 
Sbjct: 487 ASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQ 545

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V
Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 605

Query: 420 KP 421
            P
Sbjct: 606 SP 607


>gi|313143572|ref|ZP_07805765.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128603|gb|EFR46220.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 605

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 39/202 (19%), Positives = 81/202 (40%), Gaps = 31/202 (15%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG---------- 291
            GDF++       S   ++  L+    +++++ P +  ++ Q A  + G           
Sbjct: 313 NGDFAISIFSQGVSINRIVEFLQTYGKVQSVSNPKVLTLNNQPAIISVGSVLRYFQNTTY 372

Query: 292 ---------QHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
                    Q+L +T  S         + +  +  ++L   P++     I +  QT   E
Sbjct: 373 QTTTQGTSIQNLSQTFPSVFAGILLDVTPSVKNDKIILKINPSITKTKDISIENQTTALE 432

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                     P+   ++  + V++  G  IVL GL+     Q+   +P+L  IP++  LF
Sbjct: 433 --------SPPNLSTKQLSSLVQVKDGEKIVLGGLIDKTEGQILRKLPILGDIPLIKYLF 484

Query: 399 RNSRFNREETEIFIAATPFLVK 420
              +  +E  E+ I  +P +V+
Sbjct: 485 SYKKNIKETQEMVIIISPHIVR 506


>gi|172064938|ref|YP_001815650.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia ambifaria MC40-6]
 gi|171997180|gb|ACB68097.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MC40-6]
          Length = 589

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHF 318
           + AL+   A +  A P +  ++   A   +  Q        ++G   SV+T   G+ L  
Sbjct: 428 ISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRV 484

Query: 319 TPTVLSP-GRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            P V+   GR  +++   + +  +      ++P  +    +T   +  G  +++AG   D
Sbjct: 485 LPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFIEEGQALLIAGYRAD 544

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                  G+P LSKIP++GALFR     +   E     +P ++ P
Sbjct: 545 TATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 589


>gi|161614190|ref|YP_001588155.1| hypothetical protein SPAB_01932 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363554|gb|ABX67322.1| hypothetical protein SPAB_01932 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           +  + + V I +V    + Q+G       S  G  K  A + G   +++GG      V+ 
Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310
           D  +F   L+ALE+++    L++P++  ++   A          K          S+TT 
Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
             G +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G 
Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++L G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486


>gi|86605695|ref|YP_474458.1| type IV pilus secretin PilQ [Synechococcus sp. JA-3-3Ab]
 gi|86554237|gb|ABC99195.1| putative type IV pilus secretin PilQ [Synechococcus sp. JA-3-3Ab]
          Length = 723

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 35/54 (64%)

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           T+ L GL++++ +   + +PLLS+IP+LG+LFR        +E+ +  TP +++
Sbjct: 669 TLFLGGLIQEEDRVSVDKVPLLSEIPLLGSLFRRQNTTNTRSEVVVLITPVILE 722


>gi|186976189|gb|ACD01071.1| EivG [Escherichia coli O157:H7 str. EC10]
          Length = 567

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   +  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTFISTIARVPQGKSLL 469

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498


>gi|301027449|ref|ZP_07190786.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 69-1]
 gi|300394957|gb|EFJ78495.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 69-1]
          Length = 567

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   +  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498


>gi|197247911|ref|YP_002146647.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197211614|gb|ACH49011.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           +  + + V I +V    + Q+G       S  G  K  A + G   +++GG      V+ 
Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310
           D  +F   L+ALE+++    L++P++  ++   A          K          S+TT 
Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
             G +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G 
Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++L G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486


>gi|167551637|ref|ZP_02345391.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168263775|ref|ZP_02685748.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168463196|ref|ZP_02697127.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|194442462|ref|YP_002040647.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|198244927|ref|YP_002215736.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|194401125|gb|ACF61347.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|195633943|gb|EDX52295.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197939443|gb|ACH76776.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205323577|gb|EDZ11416.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205347635|gb|EDZ34266.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|326623484|gb|EGE29829.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           +  + + V I +V    + Q+G       S  G  K  A + G   +++GG      V+ 
Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310
           D  +F   L+ALE+++    L++P++  ++   A          K          S+TT 
Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
             G +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G 
Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++L G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486


>gi|328545283|ref|YP_004305392.1| Possible pilus assembly protein (CpaC) [polymorphum gilvum
           SL003B-26A1]
 gi|326415025|gb|ADZ72088.1| Possible pilus assembly protein (CpaC) [Polymorphum gilvum
           SL003B-26A1]
          Length = 157

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 17/135 (12%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++   KV  ++ P D   V+V +P+ ADV +H   T+ + GK  G  N++++  D + +
Sbjct: 33  VTVDRAKVFRIEAPADT--VIVGNPSIADVTMHDRFTVVVTGKTFGTTNLVILDKDSQPI 90

Query: 110 LNLDILI---ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           ++  I++   E D+  +   L R+           S +      VR + D++ A EL  T
Sbjct: 91  IDEVIVVRPPETDVVTVTRNLNRY---------SYSCSPTCEPTVR-VGDAKDAFEL--T 138

Query: 167 FLSQSGRNQYANSSS 181
               + RN+ A S++
Sbjct: 139 VNQAAARNEMAVSAA 153


>gi|16764744|ref|NP_460359.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|1498307|gb|AAC44301.1| SpiA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16419915|gb|AAL20318.1| secretion system apparatus protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|261246600|emb|CBG24410.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267993282|gb|ACY88167.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157929|emb|CBW17424.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912379|dbj|BAJ36353.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321224019|gb|EFX49082.1| Secretion system apparatus SsaC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129666|gb|ADX17096.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988281|gb|AEF07264.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           +  + + V I +V    + Q+G       S  G  K  A + G   +++GG      V+ 
Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310
           D  +F   L+ALE+++    L++P++  ++   A          K          S+TT 
Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
             G +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G 
Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++L G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486


>gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254547834|gb|ACT57211.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 135

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 7/74 (9%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGK 107
           +I I + + +ILQ  V  + V+V D    DV+ +   +T+ + GKN+G  N+I++GH   
Sbjct: 34  RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH--- 90

Query: 108 QMLNLDILIERDIA 121
              N DIL++ +IA
Sbjct: 91  ---NNDILLDTEIA 101


>gi|294625827|ref|ZP_06704443.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599855|gb|EFF43976.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 607

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%)

Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +  TI E+R   ++ +G       QH+   TG   G    F     G   ++G    V G
Sbjct: 371 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVGG 429

Query: 250 VL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            L        R+   T + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 430 TLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359
            +  +     GV L   P+V+ PG     +R+   + +  +G N  D +P     +  T 
Sbjct: 487 ASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQ 545

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V
Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 605

Query: 420 KP 421
            P
Sbjct: 606 SP 607


>gi|197264837|ref|ZP_03164911.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197243092|gb|EDY25712.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           +  + + V I +V    + Q+G       S  G  K  A + G   +++GG      V+ 
Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310
           D  +F   L+ALE+++    L++P++  ++   A          K          S+TT 
Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
             G +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G 
Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++L G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486


>gi|168233588|ref|ZP_02658646.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168239278|ref|ZP_02664336.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194471885|ref|ZP_03077869.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194734057|ref|YP_002114408.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204927561|ref|ZP_03218762.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|194458249|gb|EDX47088.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194709559|gb|ACF88780.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288005|gb|EDY27392.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204322903|gb|EDZ08099.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205332374|gb|EDZ19138.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           +  + + V I +V    + Q+G       S  G  K  A + G   +++GG      V+ 
Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310
           D  +F   L+ALE+++    L++P++  ++   A          K          S+TT 
Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
             G +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G 
Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++L G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486


>gi|300936194|ref|ZP_07151130.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 21-1]
 gi|300458651|gb|EFK22144.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 21-1]
          Length = 567

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + L + I ++ +  L+Q+G   S T   GSS       +A F     +  G  S    L
Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F   + AL +      +A P +       A F +      K V   T      T  
Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           YG ++   P   +  +I L +  E    +     N  D+P        T   +P G +++
Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           + G  +D        IP+L  IP +G LF
Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGILF 498


>gi|56413635|ref|YP_150710.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362559|ref|YP_002142196.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127892|gb|AAV77398.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094036|emb|CAR59532.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           +  + + V I +V    + Q+G       S  G  K  A + G   +++GG      V+ 
Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310
           D  +F   L+ALE+++    L++P++  ++   A          K          S+TT 
Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
             G +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G 
Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++L G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486


>gi|83645990|ref|YP_434425.1| putative type III secretion protein YscC [Hahella chejuensis KCTC
           2396]
 gi|83634033|gb|ABC30000.1| putative type III secretion protein YscC [Hahella chejuensis KCTC
           2396]
          Length = 573

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 96/242 (39%), Gaps = 27/242 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGK-----------FVSEG 242
           QV ++V+I +V  D L ++GF+  I G +     SF  ADF               V +G
Sbjct: 311 QVEIEVSIIDVSTDRLNEMGFEWRINGRNG----SFTNADFSQGALPRSPNELSFVVGDG 366

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            +FS      +  F + + AL        L++PT+  +    A          + V    
Sbjct: 367 ANFSTLLTNTQDLFLSRIRALSEDGDASVLSQPTILTLDNIEAVLDHSTTFFVRLVGDR- 425

Query: 303 GATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
               +     G V+  TP ++      +I L I  E  +   G    D+P+       T 
Sbjct: 426 -EVDLFPVSVGSVVRVTPHIVKGDLSDKIHLNINIEDGQQT-GQAVDDIPAVSKSIITTE 483

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +   G++++ G   +     +  IP+L  IP+LG LFR      + +++   A  FL+
Sbjct: 484 ALVNDNGSLLVGGYYFNQDSTNRSKIPVLGDIPLLGRLFRT-----DGSQLQKRARLFLI 538

Query: 420 KP 421
            P
Sbjct: 539 SP 540


>gi|62287139|sp|Q9ZHF3|PILQ_NEIME RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           Flags: Precursor
 gi|4027986|gb|AAC96097.1| secretin precursor [Neisseria meningitidis H44/76]
          Length = 766

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 3/149 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   S S G +S  T     VL  T
Sbjct: 604 LSASESLSKPKTLANPRVLTQNRKEAKIESGYEIPFTVTSRSGGGSSTNTELKKAVLGLT 663

Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +   G+I + ++     P    +    +     +  +T   + +GGT+++ G+ ++
Sbjct: 664 VTPNITPDGQIIMTVKINKDSPRQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 723

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           D       +PLL+  P+     ++   NR
Sbjct: 724 DNGNTLTKVPLLATSPLSATSLKHGEKNR 752


>gi|188574359|ref|YP_001911288.1| HrpA type III secretion outer membrane pore, YscC/HrcC family
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518811|gb|ACD56756.1| HrpA type III secretion outer membrane pore, YscC/HrcC family
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 591

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 23/244 (9%)

Query: 196 VTLKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           + +  TI E+R   ++ +G       QH+   TG   G    F     G   ++G    V
Sbjct: 353 LQIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPV 411

Query: 248 KGVL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            G L        R+   T + ALE     + ++ P +  +    A      Q   +   S
Sbjct: 412 GGTLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--S 468

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKAD 357
              +  +     GV L   P+V+ PG     +R+   + +  +G N  D +P     +  
Sbjct: 469 GYASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEIK 527

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T   +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP 
Sbjct: 528 TQAFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPH 587

Query: 418 LVKP 421
           +V P
Sbjct: 588 VVSP 591


>gi|114568966|ref|YP_755646.1| hypothetical protein Mmar10_0415 [Maricaulis maris MCS10]
 gi|114339428|gb|ABI64708.1| conserved hypothetical protein [Maricaulis maris MCS10]
          Length = 152

 Score = 41.6 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 46/89 (51%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           A A  + I  V       +++ +    ++++P +   ++V +P+ AD +VH  RT+ + G
Sbjct: 6   ATAFTLAIVCVAPAAAHDLAVPVEHAEVIRLPAEASAIVVGNPSIADALVHDGRTLVVTG 65

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDI 120
           +  G+ NVI +   G+ +   DI++   +
Sbjct: 66  RLQGRTNVIALDRVGRVIYERDIVVSNPV 94


>gi|322615120|gb|EFY12043.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322619963|gb|EFY16836.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322622274|gb|EFY19119.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627796|gb|EFY24586.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322632859|gb|EFY29603.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322636650|gb|EFY33353.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322641157|gb|EFY37799.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322644908|gb|EFY41441.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322650255|gb|EFY46669.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322655829|gb|EFY52131.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322660154|gb|EFY56393.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322665279|gb|EFY61467.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669536|gb|EFY65684.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322673462|gb|EFY69564.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322677390|gb|EFY73454.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322679947|gb|EFY75986.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322687419|gb|EFY83391.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323193477|gb|EFZ78684.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323198609|gb|EFZ83710.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323208655|gb|EFZ93593.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323211192|gb|EFZ96039.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323217632|gb|EGA02347.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323218980|gb|EGA03490.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323223665|gb|EGA07975.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323229434|gb|EGA13557.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323232657|gb|EGA16753.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323240305|gb|EGA24349.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242706|gb|EGA26727.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323245918|gb|EGA29906.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252482|gb|EGA36329.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255189|gb|EGA38968.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260064|gb|EGA43689.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323267172|gb|EGA50657.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271505|gb|EGA54926.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           +  + + V I +V    + Q+G       S  G  K  A + G   +++GG      V+ 
Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310
           D  +F   L+ALE+++    L++P++  ++   A          K          S+TT 
Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
             G +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G 
Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++L G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486


>gi|323530312|ref|YP_004232464.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. CCGE1001]
 gi|323387314|gb|ADX59404.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. CCGE1001]
          Length = 610

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLH 317
           ++AL+++   +  A P +  ++   A      +   + VS  T A   SV+T   GV L 
Sbjct: 449 VNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVR-VSGYTSADLYSVST---GVSLR 504

Query: 318 FTPTVLSP-GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLK 375
             P V+   GR  +++   + +  I     D +P       +T   +  G ++++AG   
Sbjct: 505 VLPLVVEENGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESFVGQGESLLIAGYRV 564

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           D     + G+P LSKIP++GALFR     R   E     +P +++
Sbjct: 565 DTSTNGETGVPGLSKIPLIGALFRYRDDQRSHMERLFLLSPRIIE 609


>gi|213649903|ref|ZP_03379956.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 109

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T   +P G ++++ G  +D      + IP+L K+P++G+LFR S  N+           F
Sbjct: 4   TIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN-----VVRVF 58

Query: 418 LVKPVAMRDLSRPDDHYSVED 438
           +++P  + D   PD   SV +
Sbjct: 59  MIEPKEIVDPLTPDASESVNN 79


>gi|62179985|ref|YP_216402.1| secretion system apparatus SsaC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|168240906|ref|ZP_02665838.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194448307|ref|YP_002045398.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|200390529|ref|ZP_03217140.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|224584095|ref|YP_002637893.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62127618|gb|AAX65321.1| Secretion system apparatus SsaC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194406611|gb|ACF66830.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|199602974|gb|EDZ01520.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205339640|gb|EDZ26404.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|224468622|gb|ACN46452.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322714452|gb|EFZ06023.1| secretion system apparatus SsaC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           +  + + V I +V    + Q+G       S  G  K  A + G   +++GG      V+ 
Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310
           D  +F   L+ALE+++    L++P++  ++   A          K          S+TT 
Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
             G +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G 
Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++L G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486


>gi|16760517|ref|NP_456134.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141723|ref|NP_805065.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|168822263|ref|ZP_02834263.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|213051564|ref|ZP_03344442.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213428550|ref|ZP_03361300.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213647233|ref|ZP_03377286.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213854968|ref|ZP_03383208.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238913201|ref|ZP_04657038.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|25511812|pir||AB0700 probable outer membrane secretory protein spiA [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502813|emb|CAD01971.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137351|gb|AAO68914.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|205341330|gb|EDZ28094.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320086125|emb|CBY95899.1| Yop proteins translocation protein C Flags: Precursor [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           +  + + V I +V    + Q+G       S  G  K  A + G   +++GG      V+ 
Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310
           D  +F   L+ALE+++    L++P++  ++   A          K          S+TT 
Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
             G +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G 
Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++L G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486


>gi|149917610|ref|ZP_01906107.1| type II and III secretion system protein [Plesiocystis pacifica
           SIR-1]
 gi|149821673|gb|EDM81071.1| type II and III secretion system protein [Plesiocystis pacifica
           SIR-1]
          Length = 777

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 23/182 (12%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG------GQHLYKTVSSSTGAT--- 305
           +F  V+ AL+    +  +AEP +     + A    G      G   +      T  T   
Sbjct: 498 AFGVVIQALQSNDDVNIVAEPHIYTADNKEAQIEVGRKVPTPGALQFGGAGGGTSLTPLQ 557

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKADTTV 360
           S+   D  + +  TP V     + L I+ E       +PV+GV        R++  +   
Sbjct: 558 SINREDVTLDIKVTPHVKDETSLTLDIELEDRDVVDQDPVLGVTT---TKRRIKLENVLA 614

Query: 361 --ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             +LP    +VL GL+++   +  + +P L  IPILG LF+     +E+  + I   P +
Sbjct: 615 RDDLP----VVLGGLMRERELENTQQVPGLGSIPILGWLFKRRVKQKEKINLLIVLIPHV 670

Query: 419 VK 420
           V+
Sbjct: 671 VE 672


>gi|154250684|ref|YP_001411508.1| hypothetical protein Plav_0228 [Parvibaculum lavamentivorans DS-1]
 gi|154154634|gb|ABS61851.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
          Length = 172

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 36/61 (59%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           +NK   L +      V+V +P+ ADV V   + +Y+ G++ G+ N+I +   G+ +L+++
Sbjct: 40  MNKSKALHLGQPASTVMVGNPSIADVTVEGSKLLYVMGRSYGRTNIIALDSSGETILDIN 99

Query: 114 I 114
           +
Sbjct: 100 V 100


>gi|120609177|ref|YP_968855.1| YscC/HrcC family type III secretion outer membrane protein
           [Acidovorax citrulli AAC00-1]
 gi|58700619|gb|AAW81010.1| HrcC [Acidovorax citrulli]
 gi|120587641|gb|ABM31081.1| type III secretion outer membrane pore, YscC/HrcC family
           [Acidovorax citrulli AAC00-1]
          Length = 683

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 35/232 (15%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSI-TGSSS------GPSKSFAADFGGKFVSEGGDFSVK 248
           V L+ TI EV  D +  +G   S+  G+SS      GPS   A       V + G   + 
Sbjct: 448 VELEATIIEVNSDSVDALGVNWSLRAGTSSISTNLPGPSTPAALS---TIVLDAGRHLLA 504

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
            V          +ALE     R L++P++  ++ ++A          K V++   A ++ 
Sbjct: 505 NV----------NALEAQGKARILSKPSVLGVANRAAVMRE------KRVATVRVAGNLE 548

Query: 309 TH----DYGVVLHFTPTVLSP--GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVE 361
            +    + G +L  TP V +P  G+  +++   + +     N  D +P  +  +  T   
Sbjct: 549 ANLFQIEAGTLLQMTPQV-TPVDGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAH 607

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS-RFNREETEIFI 412
           +  G ++++ G+  +        +P LSK+P++G +FRN+ R  R    +F+
Sbjct: 608 VREGESLLIGGITVESENTQDNAVPGLSKLPVVGGVFRNTERLTRRTERLFL 659


>gi|323202935|gb|EFZ87970.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
          Length = 429

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           +  + + V I +V    + Q+G       S  G  K  A + G   +++GG      V+ 
Sbjct: 198 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 252

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310
           D  +F   L+ALE+++    L++P++  ++   A          K          S+TT 
Sbjct: 253 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 311

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
             G +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G 
Sbjct: 312 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 369

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++L G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 370 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 418


>gi|307725648|ref|YP_003908861.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. CCGE1003]
 gi|307586173|gb|ADN59570.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. CCGE1003]
          Length = 610

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLH 317
           ++AL+++   +  A P +  ++   A      +   + VS  T A   SV+T   GV L 
Sbjct: 449 VNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVR-VSGYTSADLYSVST---GVSLR 504

Query: 318 FTPTVLSP-GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLK 375
             P V+   GR  +++   + +  I     D +P       +T   +  G ++++AG   
Sbjct: 505 VLPLVVEENGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESFVGQGESLLIAGYRV 564

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           D     + G+P LSKIP++GALFR     R   E     +P +++
Sbjct: 565 DTSTNGETGVPGLSKIPLIGALFRYRDDQRSHMERLFLLSPRIIE 609


>gi|260899863|ref|ZP_05908258.1| protein VcsC2 [Vibrio parahaemolyticus AQ4037]
 gi|308107338|gb|EFO44878.1| protein VcsC2 [Vibrio parahaemolyticus AQ4037]
          Length = 488

 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           P    +  ++ V +  G TI+L G      QQ + GIP+LS IP+LG LF+++
Sbjct: 417 PRVSSQSLNSEVYIKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKST 469


>gi|329890282|ref|ZP_08268625.1| general secretion pathway protein D [Brevundimonas diminuta ATCC
           11568]
 gi|328845583|gb|EGF95147.1| general secretion pathway protein D [Brevundimonas diminuta ATCC
           11568]
          Length = 698

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 14/193 (7%)

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           +I TL     T + GQ    T+G   L     +S   T+    D GV L   P + + G 
Sbjct: 474 SIMTLDNEEATFLVGQEVPITTGQTILD---GNSNPFTTTERKDIGVRLTVRPQINAGGS 530

Query: 328 IGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L ++ EVS    ++   A D+   + R+ +TT+ +  G   V  GLL  +       +
Sbjct: 531 ITLTLRQEVSSINGLLTSGANDLILDK-RELETTLVVDDGDIAVAGGLLDQNDGLETSKV 589

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P L  IP +G LFR++   R  T + +   P +++  A        D   +  D   +  
Sbjct: 590 PGLGDIPGVGVLFRSTSRERGRTNLMVFLRPTILRTTA--------DAQGLAADRWGYMR 641

Query: 446 NRVNKIYGPKEAS 458
               +++  +E S
Sbjct: 642 GEQQRVHPDREPS 654


>gi|58579717|ref|YP_198733.1| hypothetical protein XOO0094 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84621739|ref|YP_449111.1| HrcC protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|7350909|gb|AAC95122.2| HrpA [Xanthomonas oryzae pv. oryzae]
 gi|9711580|dbj|BAB07849.1| HrpA [Xanthomonas oryzae pv. oryzae]
 gi|24251284|gb|AAN46403.1| HrcC [Xanthomonas oryzae pv. oryzae]
 gi|50428343|dbj|BAD29980.1| HrcC [Xanthomonas oryzae pv. oryzae]
 gi|58424311|gb|AAW73348.1| HrcC protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84365679|dbj|BAE66837.1| HrcC protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|118076671|gb|ABK60047.1| HrcC [Xanthomonas oryzae pv. oryzae]
          Length = 605

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%)

Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +  TI E+R   ++ +G       QH+   TG   G    F     G   ++G    V G
Sbjct: 369 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPVGG 427

Query: 250 VL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            L        R+   T + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 428 TLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 484

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359
            +  +     GV L   P+V+ PG     +R+   + +  +G N  D +P     +  T 
Sbjct: 485 ASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEIKTQ 543

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V
Sbjct: 544 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 603

Query: 420 KP 421
            P
Sbjct: 604 SP 605


>gi|302879515|ref|YP_003848079.1| type II and III secretion system protein [Gallionella
           capsiferriformans ES-2]
 gi|302582304|gb|ADL56315.1| type II and III secretion system protein [Gallionella
           capsiferriformans ES-2]
          Length = 599

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 106/278 (38%), Gaps = 37/278 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           KVMN        QV L+ TI EV      Q G   S+   + G S +  +  G       
Sbjct: 306 KVMN----NARRQVLLEATIVEVTLSDQYQQGIDWSLL-RTLGLSLTQVSPVGALTAMGT 360

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             ++  G    FS    +  LE    +  L+ P L+ ++ Q+       + +Y T+  + 
Sbjct: 361 ISYTNPGKPGSFSLSGSIKLLETFGKLHVLSSPKLSVLNNQTGLVKVVDESVYFTIEVTQ 420

Query: 303 GA--------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------- 338
           G               +++ T   G +++ TP +     + L ++  ++           
Sbjct: 421 GTYGANNTVLTLPTYTSTIHTVPVGFMMYVTPQIGGDTEVTLNLRPTITRILSYAKDPNP 480

Query: 339 -------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
                  P + V    +P  + R+ ++ + + +G   VL GL++D        IP L  +
Sbjct: 481 ALINTITPALSV-TNLIPQIQTREMESIMRVRNGDIAVLGGLMQDTRAGDTNQIPGLGSV 539

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           P LG LF+       ++E+ +   P ++      DL R
Sbjct: 540 PGLGQLFKARTDKNTKSELVVFLRPVILNQETQYDLVR 577


>gi|161503511|ref|YP_001570623.1| hypothetical protein SARI_01587 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864858|gb|ABX21481.1| hypothetical protein SARI_01587 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 97/234 (41%), Gaps = 19/234 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  + + V I +V    + Q+G       S  G   +F +   G    +   FS   + D
Sbjct: 253 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNS---GPNEGDTNGFSTV-ISD 308

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTHD 311
             +F   L+ALE+++    L++P++  ++   A          K          S+TT  
Sbjct: 309 TSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT-- 366

Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            G +L  TP +L+        + L IQ +  +         +P  +  +  +   L +G 
Sbjct: 367 -GSLLRVTPRLLNDNGTQKIMLNLNIQ-DGQQSDTQSETNPLPEVQNSEIASQATLLAGQ 424

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++L G  +    + +  IPLL  IP+LG LFRN     + T++      FL+K
Sbjct: 425 SLLLGGFKQGKQIRSQNKIPLLGDIPVLGHLFRN-----DTTQVHSVIRLFLIK 473


>gi|71905856|ref|YP_283443.1| type II and III secretion system secretin [Dechloromonas aromatica
           RCB]
 gi|71845477|gb|AAZ44973.1| type II and III secretion system protein:NolW-like:Secretin/TonB,
           short N-terminal [Dechloromonas aromatica RCB]
          Length = 715

 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 316 LHFTPTVLSPG--RIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLA 371
           L  TP +   G  R+ L ++ E ++    V  N    P  +    +T V + +GGT+V+ 
Sbjct: 601 LEVTPQITPEGTVRMNLVVKKEEADWTKAVVLNGYANPPIKSSVVETNVVVENGGTVVIG 660

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLV 419
           G+   D Q   E +PLL  IP  G LF  +N    R E  +FI  TP ++
Sbjct: 661 GVFITDTQNSVEKVPLLGDIPFFGWLFKYKNDIGKRRELLVFI--TPRVI 708


>gi|289804850|ref|ZP_06535479.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 230

 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 100/238 (42%), Gaps = 33/238 (13%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-DRF 254
           + + V I +V    + Q+G       S  G   +F         ++GG      V+ D  
Sbjct: 2   IEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGL-----NDGGASGFSTVISDTS 56

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG--------GQHLYKTVSSSTGATS 306
           +F   L+ALE+++    L++P++  ++   A             G+ + K  S +TG+  
Sbjct: 57  NFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITTGS-- 114

Query: 307 VTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVEL 362
                   +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L
Sbjct: 115 --------LLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATL 166

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +G +++L G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 167 LAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 219


>gi|7416860|dbj|BAA94087.1| hypersensitive response secretion protein [Xanthomonas oryzae pv.
           oryzae]
          Length = 605

 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%)

Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +  TI E+R   ++ +G       QH+   TG   G    F     G   ++G    V G
Sbjct: 369 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPVGG 427

Query: 250 VL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            L        R+   T + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 428 TLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 484

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359
            +  +     GV L   P+V+ PG     +R+   + +  +G N  D +P     +  T 
Sbjct: 485 ASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEIKTQ 543

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V
Sbjct: 544 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 603

Query: 420 KP 421
            P
Sbjct: 604 SP 605


>gi|319785612|ref|YP_004145088.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171500|gb|ADV15038.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 140

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G G ++++   K++ L  P D   ++V +P  AD  V    T+ L GK  G  N++++  
Sbjct: 26  GAGIEVTMNQAKIVKLSRPADT--IVVGNPAIADASVQDASTIVLTGKGFGVTNLVVLDT 83

Query: 105 DGKQMLNLDILIERDIAHLEMTLRR 129
           DG  +++  + + R  A      RR
Sbjct: 84  DGSPIVDEQVTVVRQAASSVRIYRR 108


>gi|253990944|ref|YP_003042300.1| type III secretion system EscC protein [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782394|emb|CAQ85558.1| Putative type III secretion system EscC protein [Photorhabdus
           asymbiotica]
          Length = 491

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 367 TIVLAGLLKDDIQQL--KEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           TI+L G   D+I+ L  + G+P+LS IP+LG +F+N++  + + + +IA +
Sbjct: 438 TIILGGF--DNIETLSSESGVPVLSSIPLLGEIFKNTKLTKRKYKRYIAVS 486


>gi|205352890|ref|YP_002226691.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272671|emb|CAR37581.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|309243418|gb|ADO51994.1| SsaC [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|326627962|gb|EGE34305.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 497

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           +  + + V I +V    + Q+G       S  G  K  A + G   +++GG      V+ 
Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310
           D  +F   L+ALE+++    L++P++  ++   A          K          S+TT 
Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
             G +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G 
Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLDLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++L G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486


>gi|167573168|ref|ZP_02366042.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia oklahomensis C6786]
          Length = 577

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLH 317
           ++AL+  + ++  A P L A    S +        +  VS  T A   S+ T   GV L 
Sbjct: 414 VNALQSTSKVKIDASP-LVATLDNSEAVMDNMTRFFVRVSGYTSADLYSIAT---GVSLR 469

Query: 318 FTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             P ++  G   RI L +     + + G     +P     + +T   +  G ++++AG  
Sbjct: 470 VLPLIVQDGSETRIKLNVHVTDGQ-LTGDLVDSIPVVTSSEINTQAFVGQGESLLIAGYS 528

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            D       G+P LSKIP++GALFR +       E     +P ++ P
Sbjct: 529 TDKRSNGVTGVPWLSKIPLIGALFRYNSDEHSHMERVFLLSPRIIDP 575


>gi|223993111|ref|XP_002286239.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977554|gb|EED95880.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 4031

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 14/122 (11%)

Query: 163  LSETFLSQSGRNQYANSSSKKVMNLLNIAGED-----QVTLKVTIAEVRRDILKQIGFQH 217
            LSET+L+  G N    + SK +    + + E+     Q    V   EVRR+I    G+Q 
Sbjct: 1413 LSETYLNDDGDNIPVYARSKSMSIAFDASAEEVQNALQQMPNVNHVEVRREIDNVDGYQW 1472

Query: 218  SITG-SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
             +T  S+ GP  SF  D+     +    FSV          +VL  L  + A  T+A+PT
Sbjct: 1473 FVTFVSNEGPQPSFTVDYSHLVGANTAGFSVT--------RSVLGVLPESYASFTIADPT 1524

Query: 277  LT 278
            ++
Sbjct: 1525 VS 1526


>gi|153008055|ref|YP_001369270.1| hypothetical protein Oant_0719 [Ochrobactrum anthropi ATCC 49188]
 gi|151559943|gb|ABS13441.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
          Length = 139

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 43/70 (61%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I++  ++  IL++      V++ +P+ AD VV   +T+ L GK+ G  N++++   G+ +
Sbjct: 36  IALETSQARILRLARPADSVVIGNPSIADAVVQDAQTIVLTGKDFGVTNIVVMDKQGEPI 95

Query: 110 LNLDILIERD 119
           L+ ++++ R+
Sbjct: 96  LDRELVVSRN 105


>gi|302877484|ref|YP_003846048.1| type II and III secretion system protein [Gallionella
           capsiferriformans ES-2]
 gi|302580273|gb|ADL54284.1| type II and III secretion system protein [Gallionella
           capsiferriformans ES-2]
          Length = 573

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 22/158 (13%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---------KTVSSSTGAT 305
           SF  +L+ LE    +  L+ P ++ ++ Q A    G    +          TV+ +  A 
Sbjct: 367 SFALLLNFLESQGDVHVLSSPRISTLNNQKAVLKVGTDEFFVTEISGGSQATVNVAGTAP 426

Query: 306 SVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGD----MPSYR 352
           ++ T  +  G+VL  TP +     I L +   +S          +G   G     M S  
Sbjct: 427 TIKTQPFFSGIVLDVTPKIDENNEIILHVHPSISSVTTVNKVLNLGATTGTYTLPMASSS 486

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           + + D+ V    G  + + GL++ D    + G+P LSK
Sbjct: 487 ISETDSIVRARDGQIVAIGGLMRQDSTNGESGLPGLSK 524


>gi|325927686|ref|ZP_08188914.1| HrcC protein [Xanthomonas perforans 91-118]
 gi|325541887|gb|EGD13401.1| HrcC protein [Xanthomonas perforans 91-118]
          Length = 607

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%)

Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +  TI E+R   ++ +G       QH+   TG   G    F     G   ++G    V G
Sbjct: 371 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVGG 429

Query: 250 VL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            L        R+   T + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 430 TLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359
            +  +     GV L   P+V+ PG     +R+   + +  +G N  D +P     +  T 
Sbjct: 487 ASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQ 545

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     IP LSKIP++G LF++ + +    +     TP +V
Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAIPGLSKIPLVGNLFKHRQKSGTRMQRLFLLTPHVV 605

Query: 420 KP 421
            P
Sbjct: 606 SP 607


>gi|167828524|ref|ZP_02459995.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 9]
 gi|226199138|ref|ZP_03794700.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|225928913|gb|EEH24938.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 588

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 8/164 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + AL+  + ++  A P +  +    A   +  +   K    +S    SV+T   GV L  
Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P ++  G   RI + +     + + G    ++P     + +T   +  G ++++AG   
Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           D       G+P LSKIP+LGALFR    ++   E     +P ++
Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRII 584


>gi|78045991|ref|YP_362166.1| HrcC protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|462304|sp|P80151|HRPA1_XANEU RecName: Full=Hypersensitivity response secretion protein hrpA1;
           Flags: Precursor
 gi|398109|gb|AAA27603.1| hrpA1 [Xanthomonas campestris]
 gi|984886|gb|AAB08464.1| HrpA1 [Xanthomonas euvesicatoria]
 gi|78034421|emb|CAJ22066.1| HrcC protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 607

 Score = 40.8 bits (94), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%)

Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +  TI E+R   ++ +G       QH+   TG   G    F     G   ++G    V G
Sbjct: 371 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVGG 429

Query: 250 VL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            L        R+   T + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 430 TLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359
            +  +     GV L   P+V+ PG     +R+   + +  +G N  D +P     +  T 
Sbjct: 487 ASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQ 545

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     IP LSKIP++G LF++ + +    +     TP +V
Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAIPGLSKIPLVGNLFKHRQKSGTRMQRLFLLTPHVV 605

Query: 420 KP 421
            P
Sbjct: 606 SP 607


>gi|294055173|ref|YP_003548831.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614506|gb|ADE54661.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 709

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 18/136 (13%)

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEV----SEPVIGVNAGDM----------PSYRVRK 355
            D G+ L  TP + + G + + I+  V    SE     N GD           P   VR+
Sbjct: 527 RDVGIQLTVTPLIGADGSVTMTIEQTVDTIFSESST-TNTGDEDGTTSSVDTNPVIGVRE 585

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIA 413
           A++T+ +     I+L GL ++  +  +   P++ ++P++G L   +   +NR E  IF+ 
Sbjct: 586 ANSTITVNDREVIILGGLQENQREVSRTYFPIIGRMPLIGDLLSGKQIEYNRTELIIFVR 645

Query: 414 ATPFLVKPVAMRDLSR 429
            T  L  P A  +L+ 
Sbjct: 646 PT-ILRNPQAATELTE 660


>gi|167567958|ref|ZP_02360874.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia oklahomensis EO147]
          Length = 577

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLH 317
           ++AL+  + ++  A P L A    S +        +  VS  T A   S+ T   GV L 
Sbjct: 414 VNALQSTSKVKIDASP-LVATLDNSEAVMDNMTRFFVRVSGYTSADLYSIAT---GVSLR 469

Query: 318 FTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             P ++  G   RI L +     + + G     +P     + +T   +  G ++++AG  
Sbjct: 470 VLPLIVQDGSETRIKLNVHVTDGQ-LTGDLVDSIPVVTSSEINTQAFVGQGESLLIAGYS 528

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            D       G+P LSKIP++GALFR +       E     +P ++ P
Sbjct: 529 TDKRSNGVTGVPWLSKIPLIGALFRYNSDEHSHMERVFLLSPRIIDP 575


>gi|325917024|ref|ZP_08179263.1| HrcC protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325536775|gb|EGD08532.1| HrcC protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 606

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 2/111 (1%)

Query: 313 GVVLHFTPTVLSPGRIG-LRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVL 370
           GV L   P+V+     G +R+   + +  +G N  D +P     +  T   +  G ++++
Sbjct: 496 GVSLRVLPSVVPGSSNGQMRLDVRIEDGQLGANTVDGIPVITSSEITTQAFVNEGQSLLI 555

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           AG   D  Q     +P LSKIP++G LF++ + +    +     TP +V P
Sbjct: 556 AGYASDTDQTDLNKVPGLSKIPLIGNLFKHRQQSGSRLQRLFLLTPHIVSP 606


>gi|163786002|ref|ZP_02180450.1| type II general secretion pathway (GSP) D protein [Flavobacteriales
           bacterium ALC-1]
 gi|159877862|gb|EDP71918.1| type II general secretion pathway (GSP) D protein [Flavobacteriales
           bacterium ALC-1]
          Length = 718

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 21/159 (13%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-GATSVTTHDYG 313
           +F   + A+E    ++  + P L  ++G  ASF++G    Y  V  +T G  +  T +  
Sbjct: 544 NFFATVKAMETNGDLKIKSTPKLATLNGHRASFSNGQTSYYAVVQRNTIGNDNPQTTE-- 601

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVN----------AGDM-PSYRVRKADTT 359
            + ++ P      ++GL I+  V+   E ++ +N          A D  P    R   + 
Sbjct: 602 -IRNYFPV---DAKLGLEIKPYVTGNKEVLLNINVVQSNFGQRIAEDAPPDINSRDFSSV 657

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           V +      VL GL ++       G+P L++IP++  LF
Sbjct: 658 VRMKDQDIAVLGGLEENYSNNSGSGVPFLARIPLIKWLF 696


>gi|124024476|ref|YP_001018783.1| general (type II) secretion pathway protein D precursor
           [Prochlorococcus marinus str. MIT 9303]
 gi|123964762|gb|ABM79518.1| possible general (type II) secretion pathway protein D precursor
           [Prochlorococcus marinus str. MIT 9303]
          Length = 849

 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V +  G T++L G++ D   Q+    P+L  IP++G  FR++   + ++E+ I  TP ++
Sbjct: 761 VRVRDGQTLILTGVISDRDIQVVTKWPILGDIPVIGQFFRSTNGTKSKSELVIMVTPRII 820


>gi|187735593|ref|YP_001877705.1| type II and III secretion system protein [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425645|gb|ACD04924.1| type II and III secretion system protein [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 907

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 16/69 (23%), Positives = 40/69 (57%)

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           + P +  R  +T++ +  G T+ + GL+ +++Q +++ +P+   +P++G  FR++  N  
Sbjct: 803 EQPIFSKRSVETSLFIYDGHTVAIGGLITENVQTVEDKVPIFGDLPLIGRFFRSNSDNHI 862

Query: 407 ETEIFIAAT 415
           +  + I  T
Sbjct: 863 KKNLMIFVT 871


>gi|170738269|ref|YP_001779529.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia cenocepacia MC0-3]
 gi|169820457|gb|ACA95039.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia cenocepacia MC0-3]
          Length = 588

 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 8/163 (4%)

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFT 319
           ALE     +  A P +T +    A   +  Q   + VS  T A   SV+T   GV L   
Sbjct: 429 ALEEQNLAKIDASPKVTTLDNIEADMANQTQFFVR-VSGYTSADLYSVST---GVSLRVL 484

Query: 320 PTVLSPG-RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P V+  G R  +++   + +  +     D +P       +T+  +  G  +++AG   D 
Sbjct: 485 PMVVDEGGRTQIKLDVAIQDGQLTSRTVDNIPVISSTNINTSAFVNEGEALLIAGYKNDG 544

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                 G+P+LSKIP++G LF+ +       E     TP +++
Sbjct: 545 RIDTTTGVPVLSKIPVIGNLFKYTDRENTRMERLFLLTPRIIE 587


>gi|304412101|ref|ZP_07393711.1| type II and III secretion system protein [Shewanella baltica OS183]
 gi|307305996|ref|ZP_07585742.1| type II and III secretion system protein [Shewanella baltica BA175]
 gi|304349651|gb|EFM14059.1| type II and III secretion system protein [Shewanella baltica OS183]
 gi|306911489|gb|EFN41915.1| type II and III secretion system protein [Shewanella baltica BA175]
          Length = 487

 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 5/167 (2%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D   F     AL      R + E  L  +  Q   F  G +     V  S    S    +
Sbjct: 319 DTVDFFKNFQALYTNNMARGVYETNLLVLENQQGHF--GKKETATVVLISDKQVSTQKIE 376

Query: 312 YGVVLHFTPTVLSPGRIGLR---IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
               L+ T  +L  G++  +   I+  +S+      A   P    +   + V +  G T+
Sbjct: 377 AENSLYVTGRLLPSGKVQAKFSYIEESLSDDKAEGGATQAPRVNSQSLTSEVYIEPGQTV 436

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +L G        ++ G+P+LS IP LG LF++ +  + + + +++ +
Sbjct: 437 ILGGFDNTVTDSVESGVPILSSIPWLGELFKSKKETKRKYKRYVSVS 483


>gi|255624862|ref|XP_002540535.1| conserved hypothetical protein [Ricinus communis]
 gi|223495099|gb|EEF21848.1| conserved hypothetical protein [Ricinus communis]
          Length = 150

 Score = 40.8 bits (94), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E  K  ++++ + K  ++++P  VQ   V +P     ++ +P T+Y+ G +VG  N+I+ 
Sbjct: 58  EAAKPAQLALQVGKSSLMRLPEPVQHRSVGNPLVVQALMVAPDTLYIAGVDVGTTNMIIQ 117

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
           G  G   + LDI +  D + L+  L   + D +
Sbjct: 118 GKSGLCSV-LDITVAMDPSALQAMLATAMPDEH 149


>gi|330951304|gb|EGH51564.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae Cit 7]
          Length = 106

 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 326 GRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            RI + ++    EP     V+GV     P  +  + +  V +  G TIV+ G+  +   +
Sbjct: 4   NRIIMEVKVTKDEPDYLNAVLGV-----PPIKKNEVNAKVLISDGETIVIGGVFSNTQSK 58

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           + + +P L  +P LG LFR    +  ++E+ +  TP
Sbjct: 59  VVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTP 94


>gi|301167753|emb|CBW27337.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 459

 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           L I+TE+S P+    A  + S    K  + V++  G ++ +  +    IQ     +P LS
Sbjct: 372 LNIETELSRPMQSSGASTISS---NKTKSRVKITQGKSLKITDIGHQGIQHQNTSLPYLS 428

Query: 390 KIPILGALFRNS 401
           KIP+LG LF +S
Sbjct: 429 KIPLLGKLFTSS 440


>gi|153878167|ref|ZP_02004504.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152065369|gb|EDN65496.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 93

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVKPVA 423
           G  IV+ GL++ + Q  K+GIP L   P++G+ LF ++  N + TE+ +   P +V P A
Sbjct: 6   GTAIVIGGLIQVNNQDDKQGIPGLQDFPLIGSILFSSTSNNDKHTELVLIIIPEVVNPAA 65


>gi|289663772|ref|ZP_06485353.1| HrcC protein [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289668194|ref|ZP_06489269.1| HrcC protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 593

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 19/240 (7%)

Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSF-----AADFGGKFVSEGGD 244
           +  TI EVR   ++ +G       QH+   TG   G    F      A   G     GG 
Sbjct: 357 IDATIIEVRDGAMQDLGVDWRFHSQHTDVQTGDGRGGQLGFDGALSGAATQGTMTPVGGT 416

Query: 245 FS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            + V G   R+   T + ALE     + ++ P +  +    A      Q   +   S   
Sbjct: 417 LTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGYA 473

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIG-LRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVE 361
           +  +     GV L   P+V+     G +R+   + +  +G N  D +P     +  T   
Sbjct: 474 SADLYNLSAGVSLRVLPSVVPGSSNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQAF 533

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G ++++AG   D  +     +P LSKIP++G LF++ + +    +     TP +V P
Sbjct: 534 VNEGQSLLIAGYAYDADETDLNAVPGLSKIPLVGNLFKHRQKSGSRMQRLFLLTPHVVSP 593


>gi|197335747|ref|YP_002157088.1| fimbrial assembly protein PilQ [Vibrio fischeri MJ11]
 gi|197317237|gb|ACH66684.1| fimbrial assembly protein PilQ [Vibrio fischeri MJ11]
          Length = 562

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 3/150 (2%)

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           ++ P L   + + A    G +  Y   SSS GATSV+     + L  TP +    R+ L 
Sbjct: 412 ISSPRLITTNKKPAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVTPQITPDNRLVLD 470

Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +      P  V+    G+  +   ++  T V + +G T+VL G+ +  +    E +PLL 
Sbjct: 471 LTVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVDNGETVVLGGIYQHSLSNSVEKVPLLG 530

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            +P+LGALFR S  N  + E+ I  TP +V
Sbjct: 531 DLPLLGALFRRSSENIGKKELLIFVTPKVV 560


>gi|157163911|ref|YP_001467431.1| type II and III secretion system protein [Campylobacter concisus
           13826]
 gi|112801005|gb|EAT98349.1| bacterial type II and III secretion system protein [Campylobacter
           concisus 13826]
          Length = 380

 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 93/213 (43%), Gaps = 14/213 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           +QVT K+TI E     +K +G   Q  +   + G    +       +++      +K   
Sbjct: 155 EQVTFKLTITETNLKDIKDLGTNLQGLLKPLNHGDLAYYINLITSPYITNSN--VIKN-- 210

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVT 308
           +  +F  +L+ L+     + ++ P LTA +     F+S     Y   KT  S+       
Sbjct: 211 NDSAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTD 270

Query: 309 THDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +++Y   G+ ++  P +LS   I   +   + E ++  ++   P    ++  ++  L  G
Sbjct: 271 SYEYKDIGLKINLKPIILS-DHIDFDLHL-ILEDILSQSSSFTPIVSKKELKSSYSLKRG 328

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             +VL+G+ K    + + G+P+L  I +L  LF
Sbjct: 329 DVLVLSGINKKTNAKQRNGVPVLKDIWLLKYLF 361


>gi|53802350|ref|YP_112861.1| fimbrial assembly protein PilQ [Methylococcus capsulatus str. Bath]
 gi|53756111|gb|AAU90402.1| fimbrial assembly protein PilQ [Methylococcus capsulatus str. Bath]
          Length = 729

 Score = 40.4 bits (93), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 38/71 (53%)

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+ DT  ++ +G T+VL G+ +   +   + +P    +P +G +FR +     + E+ I 
Sbjct: 657 REIDTVAQVANGETVVLGGVYEGTRRNNTDKVPFFGDLPGIGFMFRRNAVEDRKKELLIF 716

Query: 414 ATPFLVKPVAM 424
            TP +VK  +M
Sbjct: 717 ITPKIVKQTSM 727


>gi|183600572|ref|ZP_02962065.1| hypothetical protein PROSTU_04158 [Providencia stuartii ATCC 25827]
 gi|188019849|gb|EDU57889.1| hypothetical protein PROSTU_04158 [Providencia stuartii ATCC 25827]
          Length = 562

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 96/232 (41%), Gaps = 26/232 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L + I ++ R  L  +G    +   ++G +   A  F    +S   DF ++  +D  
Sbjct: 309 QVELSLWIIDITRSELDNLGVNWEVGTINTGNT---AFSFNRSTLSNSTDFLLR--VDAL 363

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           S     H + R      L +  + A+   + SF       Y  +     AT +    YG 
Sbjct: 364 SKSGNGHIVSRPVL---LTQENIPALFDNNTSF-------YAKLQGERIAT-LEQVTYGT 412

Query: 315 VLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           ++   P + S  ++ + +  E      S+     N   +PS      +T   +    +++
Sbjct: 413 MVSVMPRISSGHQVEMEVNIEDGGEKQSKSGEVSNVEGLPSVNRTTINTVARIAQNSSLL 472

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + G  ++ + + +  IPLL  IP++G LF ++  N+++         FL++P
Sbjct: 473 IGGYTREQVVENESHIPLLGDIPLIGGLFSHTSVNKQK-----MVRLFLIQP 519


>gi|226946542|ref|YP_002801615.1| secretion system protein [Azotobacter vinelandii DJ]
 gi|226721469|gb|ACO80640.1| Bacterial secretion system protein [Azotobacter vinelandii DJ]
          Length = 717

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 76/173 (43%), Gaps = 1/173 (0%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D    +  L A+E+      +++P +     ++A   +G +  Y+  SSS  ATS +  +
Sbjct: 542 DHLILDLQLSAMEKTGNGEVISQPKVLTSDKETAKILTGEEIPYQEASSSG-ATSTSFKE 600

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
             + L  TP +    RI + ++    +         +P     + +  V +  G TIV+ 
Sbjct: 601 AALSLEVTPQITPDNRIIMEVKVTKDQADFAKALNGVPPINKNEVNAKVLIGDGETIVIG 660

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G+  +   +  + +P L  +P +G LFR       ++E+ +  TP ++   A+
Sbjct: 661 GVFSNIQAKSVDKVPFLGDLPFIGRLFRRDVVADSKSELLVFLTPRILNSQAI 713


>gi|114797223|ref|YP_760566.1| general secretion pathway protein D [Hyphomonas neptunium ATCC
           15444]
 gi|114737397|gb|ABI75522.1| general secretion pathway protein D [Hyphomonas neptunium ATCC
           15444]
          Length = 653

 Score = 40.4 bits (93), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 256 FETVLHALERATAIRTLAEP--------TLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
           F  +L+A+E  TA R L+ P        T   I GQ    T+G Q L +  ++S    +V
Sbjct: 430 FGVILNAVEDDTASRILSTPFGMTLNNATSALIVGQEIPVTTG-QVLGE--ANSNPFRTV 486

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSG 365
              D G+ L  TP +     + L I+ EVS  V G      P   +  R+   +V    G
Sbjct: 487 ERKDIGIQLEVTPRIGENDTVRLDIRQEVSS-VFGSVGTVTPDLILDKREIRASVLADDG 545

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             IVL GL++         +P+L  IP +G LFR+
Sbjct: 546 EIIVLGGLVEQTDTLRDTKVPVLGDIPGVGRLFRS 580


>gi|224418841|ref|ZP_03656847.1| putative type II secretion system D [Helicobacter canadensis MIT
           98-5491]
 gi|253828170|ref|ZP_04871055.1| secretion system protein [Helicobacter canadensis MIT 98-5491]
 gi|253511576|gb|EES90235.1| secretion system protein [Helicobacter canadensis MIT 98-5491]
          Length = 496

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 17/183 (9%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGA-TSVTTH 310
            S   ++  LE    + +++ P +  ++ Q A  + G    Y+  T+  +T A T++T  
Sbjct: 297 LSLNRIIEFLESYGKVESISNPKVLTLNNQPAMISVGDILRYQKNTIYQNTNAQTTLTNT 356

Query: 311 DY-------GVVLHFTPTVLSPGRIGLRI-----QTEVSEPVIGVNAGDMP-SYRVRKAD 357
           D        GV+L  TP V     I L+I     +T+ +   I   A + P +    +  
Sbjct: 357 DNEYPSLFAGVLLDITPLVFGE-EIMLKINPSITKTKENRTEIPNTAFETPPNLTTNQLS 415

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           + V + +   ++L GL+  +    +  IP+L  IP++  LF  S+      EI     P 
Sbjct: 416 SIVSVKNNQKVILGGLISKNFATKENKIPILGSIPLIKPLFSYSQEVENTEEIVFIIEPK 475

Query: 418 LVK 420
           +++
Sbjct: 476 IIQ 478


>gi|119510022|ref|ZP_01629163.1| general secretion pathway protein D [Nodularia spumigena CCY9414]
 gi|119465346|gb|EAW46242.1| general secretion pathway protein D [Nodularia spumigena CCY9414]
          Length = 826

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 35/58 (60%)

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           T+ L  G T++L+G++++  +     +P+L  +P++G+LFR +    +  E+ +  TP
Sbjct: 734 TIRLRDGQTLILSGIIQESDRTSVSKLPILGDLPLIGSLFRRTNRQNQRQEVIVLLTP 791


>gi|75909894|ref|YP_324190.1| type II and III secretion system protein [Anabaena variabilis ATCC
           29413]
 gi|75703619|gb|ABA23295.1| type II and III secretion system protein [Anabaena variabilis ATCC
           29413]
          Length = 811

 Score = 40.0 bits (92), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 34/57 (59%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           + L  G T++L+G++++  +     +P+L  +P++G+LFR +    E  E+ +  TP
Sbjct: 720 IRLRDGQTLILSGIIQESDRSTVSKLPILGDLPLIGSLFRKTNRTNERREVIVLLTP 776


>gi|170690596|ref|ZP_02881763.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia graminis C4D1M]
 gi|170145031|gb|EDT13192.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia graminis C4D1M]
          Length = 609

 Score = 40.0 bits (92), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 8/165 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLH 317
           ++AL+++   +  A P +  ++   A      +   + VS  T A   SV+T   GV L 
Sbjct: 448 VNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVR-VSGYTSADLYSVST---GVSLR 503

Query: 318 FTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLK 375
             P V+   GR  +++   + +  I     D +P       +T   +  G ++++AG   
Sbjct: 504 VLPLVVEESGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESFVGQGESLLIAGYRV 563

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           D     + G+P LSKIP++G LFR     R   E     +P +++
Sbjct: 564 DTSTNGETGVPGLSKIPLIGGLFRYRDDQRSHMERLFLLSPRIIE 608


>gi|330819413|ref|YP_004348275.1| Type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia gladioli BSR3]
 gi|327371408|gb|AEA62763.1| Type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia gladioli BSR3]
          Length = 596

 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%)

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+P     + +T   +  G ++++AG   D       G+P LS+IP+LGALFR    +  
Sbjct: 520 DIPVITTSQINTQAFVGLGESLLIAGFTTDTQTNGVTGVPFLSRIPLLGALFRYHSDDHS 579

Query: 407 ETEIFIAATPFLV 419
             E     TP ++
Sbjct: 580 HGERVFLLTPRII 592


>gi|170723341|ref|YP_001751029.1| general secretion pathway protein D [Pseudomonas putida W619]
 gi|169761344|gb|ACA74660.1| general secretion pathway protein D [Pseudomonas putida W619]
          Length = 650

 Score = 40.0 bits (92), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 14/147 (9%)

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ   F +G      T +++    ++   + GV L   P +     + L I  EVS    
Sbjct: 468 GQEVPFVTGS----VTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIAD 523

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN- 400
              A D+ + + R+  T V +   G ++L GL+ D++    + +P L  IP LG LFR+ 
Sbjct: 524 SSAASDVITNK-REIKTKVMVEDNGLVILGGLISDELSTSDQRVPFLGDIPGLGRLFRSE 582

Query: 401 -SRFNREETEIFIAATPFLVKPVAMRD 426
            S+  ++   +FI       +P  +RD
Sbjct: 583 ASKNTKQNLMVFI-------RPRILRD 602


>gi|313142359|ref|ZP_07804552.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131390|gb|EFR49007.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 505

 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 17/183 (9%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGA-TSVTTH 310
            S   ++  LE    + +++ P +  ++ Q A  + G    Y+  T+  +T A T++T  
Sbjct: 306 LSLNRIIEFLESYGKVESISNPKVLTLNNQPAMISVGDILRYQKNTIYQNTNAQTTLTNT 365

Query: 311 DY-------GVVLHFTPTVLSPGRIGLRI-----QTEVSEPVIGVNAGDMP-SYRVRKAD 357
           D        GV+L  TP V     I L+I     +T+ +   I   A + P +    +  
Sbjct: 366 DNEYPSLFAGVLLDITPLVFGE-EIMLKINPSITKTKENRTEIPNTAFETPPNLTTNQLS 424

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           + V + +   ++L GL+  +    +  IP+L  IP++  LF  S+      EI     P 
Sbjct: 425 SIVSVKNNQKVILGGLISKNFATKENKIPILGSIPLIKPLFSYSQEVENTEEIVFIIEPK 484

Query: 418 LVK 420
           +++
Sbjct: 485 IIQ 487


>gi|284007665|emb|CBA73372.1| Type III secretion outermembrane pore forming protein
           YscC,MxiD,HrcC,InvG [Arsenophonus nasoniae]
          Length = 554

 Score = 40.0 bits (92), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFIAATP 416
           T   +  G ++++ G  ++DI   +  IPLL  IP +G LFR +S  N++   IF+   P
Sbjct: 455 TVARVAQGDSLLIGGYTREDIDSSESKIPLLGDIPWIGGLFRFSSTTNKKMVRIFMLQ-P 513

Query: 417 FLVK 420
            LVK
Sbjct: 514 RLVK 517


>gi|320107685|ref|YP_004183275.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
 gi|319926206|gb|ADV83281.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
          Length = 617

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           +SS     +   D G+ L  TP +   G + + ++ ++ E + G    D+P    +   +
Sbjct: 479 ASSVVVPQIQYEDLGLTLKATPHMQRSGDVSVHLELKI-EALSGQAQNDIPILANQLVTS 537

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + L +G T ++ GLL     +   GIP LS +P   ++  N+  N+ E E+ +  TP +
Sbjct: 538 DLTLRAGETAMIMGLLTRSQSKAISGIPGLSDLPGFQSITDNT-GNKMEDEMVLLLTPVV 596

Query: 419 VK 420
           V+
Sbjct: 597 VR 598


>gi|21230696|ref|NP_636613.1| HrcC protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769309|ref|YP_244071.1| HrcC protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|188992461|ref|YP_001904471.1| HrcC protein [Xanthomonas campestris pv. campestris str. B100]
 gi|21112285|gb|AAM40537.1| HrcC protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574641|gb|AAY50051.1| HrcC protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734221|emb|CAP52429.1| HrcC protein [Xanthomonas campestris pv. campestris]
          Length = 605

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 313 GVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIV 369
           GV L   P+V+ PG     +R+   + +  +G N  D +P     +  T   +  G +++
Sbjct: 495 GVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGANTVDGIPVITSSEITTQAFVNEGQSLL 553

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +AG   D  Q     +P LS+IP++G LF++ + +    +     TP +V P
Sbjct: 554 IAGYASDTDQTDLNNVPGLSRIPLVGNLFKHRQQSGSRLQRLFLLTPHIVSP 605


>gi|323143301|ref|ZP_08077992.1| type III secretion outer membrane pore, YscC/HrcC family
           [Succinatimonas hippei YIT 12066]
 gi|322416918|gb|EFY07561.1| type III secretion outer membrane pore, YscC/HrcC family
           [Succinatimonas hippei YIT 12066]
          Length = 610

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 25/207 (12%)

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-SS 300
           GG FS     D+ +F   ++ LE     RTL  P++  +    A+      +  K   + 
Sbjct: 361 GGIFSTVFSTDQSAFMMQVNMLEEDNKARTLGRPSVLTLDNVEATLEDTTTNYVKVAGNE 420

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPG-------RIGLRIQTE----------VSEPVIGV 343
           S+    V +   G +L  TP ++          ++ + +QT           VS    G 
Sbjct: 421 SSDLFEVVS---GTILRVTPHIIDSHDGSAPYIQMVISLQTNQDTDQSQSYTVSSDAQGA 477

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +   +P  +    +T   +  G +++L G   ++ +    GIP+L  IP++G LF +S  
Sbjct: 478 DE-RIPVIKKTTINTQALVQQGQSLLLGGYYMENHRNSDNGIPVLKDIPLIGGLFGSSSD 536

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRP 430
              + E  +  TP ++    + D++ P
Sbjct: 537 EATQRERLLLITPRILD---LDDINLP 560


>gi|1903309|emb|CAA68047.1| orf 1035 [Spodoptera littoralis NPV]
          Length = 345

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG---EDQVTLKVTIAEVR 206
           M R +  S   VEL    LS S +++  N    + M LL IAG   ED+V+L+ T++E  
Sbjct: 1   MSRLVTPSP-CVELKRKLLSASPQSKVVNLDIYECMQLLRIAGDMYEDKVSLRPTLSESL 59

Query: 207 RDILKQI 213
           RD + QI
Sbjct: 60  RDKIVQI 66


>gi|318607000|emb|CBY28498.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 531

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 9/128 (7%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
           +++ +  AL   +    LA P++  +    A F  G Q +    S+ T AT     S++ 
Sbjct: 403 NWDGLFIALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 461

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366
              GV+L   P +     + L I+ EVS       VNA ++ S +  R  +  V + SG 
Sbjct: 462 QSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSVFNKRVVNNAVLVKSGE 521

Query: 367 TIVLAGLL 374
           T+V+ GLL
Sbjct: 522 TVVVGGLL 529


>gi|329847248|ref|ZP_08262276.1| outer membrane channel protein [Asticcacaulis biprosthecum C19]
 gi|328842311|gb|EGF91880.1| outer membrane channel protein [Asticcacaulis biprosthecum C19]
          Length = 158

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 38/70 (54%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G+ +++  N  + + +      V+V +P  ADV V   RT+Y+ GK  G + V + G DG
Sbjct: 25  GQPVTVEKNHTLRVTLVAPAGTVVVGNPDIADVTVVDSRTLYIVGKGFGSSAVNVAGRDG 84

Query: 107 KQMLNLDILI 116
           + + + ++ +
Sbjct: 85  RSLFDGEVTV 94


>gi|212711709|ref|ZP_03319837.1| hypothetical protein PROVALCAL_02784 [Providencia alcalifaciens DSM
           30120]
 gi|212685811|gb|EEB45339.1| hypothetical protein PROVALCAL_02784 [Providencia alcalifaciens DSM
           30120]
          Length = 567

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 26/232 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L + I ++ R  L  +G    +         SF A  GG  +S    F+   + D  
Sbjct: 314 QVELSLWIIDITRSELDNLGVNWEV--------GSFKA--GGGSIS----FNRSTLPDSS 359

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +    + ++ P L       A F +      K            T  YG 
Sbjct: 360 KFLVQIDALSKNGNSQIVSRPVLLTQENVPALFDNNTSFYAKLQGERIATLEQVT--YGT 417

Query: 315 VLHFTPTVLSPGRIGLRIQTE---VSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
           ++   P +     + + +  E    S    G   N   +PS      +T   +    +++
Sbjct: 418 MISVMPRISGGQSVEMEVNIEDGAESRDSSGKTSNVEGLPSVNRTSINTVARIAKDSSLL 477

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + G  +D     +  IPLL  IP +G LFR+S  N+++         FL++P
Sbjct: 478 IGGYTRDQYIDNESKIPLLGDIPWIGGLFRHSSTNQQKM-----VRLFLIQP 524


>gi|325271188|ref|ZP_08137740.1| Type II secretory pathway, component PulD [Pseudomonas sp. TJI-51]
 gi|324103677|gb|EGC00972.1| Type II secretory pathway, component PulD [Pseudomonas sp. TJI-51]
          Length = 360

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 14/154 (9%)

Query: 220 TGSSSGPSKSFAADF-GGKF--VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
           TG S+G + S AA    GK      G  F  +  L    F  VL AL      R +++P+
Sbjct: 206 TGDSNGSAFSLAASLLKGKLNITLAGNPFDNQVSLSTSDFSAVLSALSSDNRFRVVSQPS 265

Query: 277 LTAISGQSASFTSGGQ-HLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           L   SG  A+F+ G +  +   VS + G+     SV   D GV+ +  P V     + L 
Sbjct: 266 LRVRSGAEATFSVGAEVPVLGAVSYAQGSGEPIQSVQYRDSGVIFNLRPQVRE-STVDLV 324

Query: 332 IQTEVS---EPVIGVNAGDMPSYRVRKADTTVEL 362
           +  ++S   +   GVN  + P+   R+  T+V++
Sbjct: 325 VDQQLSNFVQTTTGVN--NSPTLTKRQLTTSVQM 356


>gi|91210748|ref|YP_540734.1| putative phage-related secreted protein [Escherichia coli UTI89]
 gi|149365806|ref|ZP_01887841.1| putative phage-related secreted protein [Yersinia pestis CA88-4125]
 gi|165927175|ref|ZP_02223007.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938242|ref|ZP_02226801.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165938650|ref|ZP_02227206.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|167422164|ref|ZP_02313917.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167466986|ref|ZP_02331690.1| putative phage-related secreted protein [Yersinia pestis FV-1]
 gi|191174647|ref|ZP_03036128.1| type II/III secretion system protein [Escherichia coli F11]
 gi|218929372|ref|YP_002347247.1| putative phage-related secreted protein [Yersinia pestis CO92]
 gi|229837795|ref|ZP_04457954.1| General secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229898356|ref|ZP_04513503.1| General secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|91072322|gb|ABE07203.1| putative phage-related secreted protein [Escherichia coli UTI89]
 gi|115347983|emb|CAL20908.1| putative phage-related secreted protein [Yersinia pestis CO92]
 gi|149292219|gb|EDM42293.1| putative phage-related secreted protein [Yersinia pestis CA88-4125]
 gi|165913524|gb|EDR32145.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165913903|gb|EDR32521.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920843|gb|EDR38091.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166958976|gb|EDR55997.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|190905074|gb|EDV64732.1| type II/III secretion system protein [Escherichia coli F11]
 gi|229688646|gb|EEO80715.1| General secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694161|gb|EEO84208.1| General secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. PEXU2]
          Length = 414

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 29/253 (11%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQ 195
           V  +SD  +L G V    ++  AV   ++    SG + Y N    +  ++L   G  ED 
Sbjct: 116 VAYLSD--ILGGYVSGSFNNSGAVISDDSLKGSSGASNYIN----RTGDILVYYGTKEDI 169

Query: 196 VTLK--VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LD 252
             LK  VT  +   D +   G+   +  S S  S    A    K +S+  + SV    LD
Sbjct: 170 AILKTLVTSLDTMSDEVVVSGYVFEVQTSQSDGSGILLA---AKILSDKFNISVGAAGLD 226

Query: 253 RF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---TVSSSTG 303
            F      S + + + L+  +    ++ P L   +  SASF+ G         TV+++T 
Sbjct: 227 NFINIRTGSIDAIFNLLKTDSRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTT 286

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTV 360
             SV     GV+ + TP++ S   + L+IQ ++S  V    GVN  + P+   R   T V
Sbjct: 287 TQSVEYRSSGVLFNVTPSIKSR-TMDLKIQQQLSNFVTTETGVN--NSPTLIKRDVTTEV 343

Query: 361 ELPSGGTIVLAGL 373
            L  G  I+L GL
Sbjct: 344 SLADGDIILLGGL 356


>gi|295690803|ref|YP_003594496.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC
           21756]
 gi|295432706|gb|ADG11878.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC
           21756]
          Length = 132

 Score = 39.7 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 1/98 (1%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           N+      +   + +   + I L +   ++DV+V DP  ADV + + RT+ + GK  G  
Sbjct: 16  NVDAAAQSRPAALPLATGQAISLSLGGAMRDVVVGDPEVADVSIVNERTLVVLGKRPGVT 75

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
           N+++ G  G+ + +  +++  +     +T+ R +  SN
Sbjct: 76  NLLVFGAGGRALTDRQLIVS-EAGGAAVTVYRGVTTSN 112


>gi|238918877|ref|YP_002932391.1| type III secretion outer membrane pore, YscC/HrcC family,
           [Edwardsiella ictaluri 93-146]
 gi|84663086|gb|ABC60068.1| EsaC [Edwardsiella ictaluri 93-146]
 gi|238868445|gb|ACR68156.1| type III secretion outer membrane pore, YscC/HrcC family, putative
           [Edwardsiella ictaluri 93-146]
          Length = 494

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 33/224 (14%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + + VTI +V    + Q+G   S +    G   SF  + GG+  S+   FS   + +  S
Sbjct: 272 IEISVTIIDVDAGDINQLGIDWSASARIGGGQVSF--NNGGRLNSD--SFS-SLISNSGS 326

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L ALE+ +  + ++ P++  +    A          K  S         T   G +
Sbjct: 327 FMVRLSALEQQSKAKIVSRPSVVTLDNVQAVLDRSITFYTKLSSEKNPKLEAITS--GAL 384

Query: 316 LHFTPTVL--------------SPGRIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           +  TP ++                GR G  + QTE            +P  +  +  T  
Sbjct: 385 MRVTPRLIRENGGNKVLLILNIEDGRQGAPLSQTE-----------SLPQVQNAEIATQA 433

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            L  G  ++L G ++++  Q    IPLL  +P++G LFR++  N
Sbjct: 434 TLNLGQALLLGGFVQNENTQGVRKIPLLGDLPLIGGLFRSTDRN 477


>gi|306813501|ref|ZP_07447691.1| putative phage-related secreted protein [Escherichia coli NC101]
 gi|305853246|gb|EFM53686.1| putative phage-related secreted protein [Escherichia coli NC101]
          Length = 414

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 29/253 (11%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQ 195
           V  +SD  +L G V    ++  AV   ++    SG + Y N    +  ++L   G  ED 
Sbjct: 116 VAYLSD--ILGGYVSGSFNNSGAVISDDSLKGSSGASNYIN----RTGDILVYYGTKEDI 169

Query: 196 VTLK--VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LD 252
             LK  VT  +   D +   G+   +  S S  S    A    K +S+  + SV    LD
Sbjct: 170 AILKTLVTSLDTMSDEVVVSGYVFEVQTSQSDGSGILLA---AKILSDKFNISVGAAGLD 226

Query: 253 RF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---TVSSSTG 303
            F      S + + + L+  +    ++ P L   +  SASF+ G         TV+++T 
Sbjct: 227 NFINIRTGSIDAIFNLLKTDSRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTT 286

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTV 360
             SV     GV+ + TP++ S   + L+IQ ++S  V    GVN  + P+   R   T V
Sbjct: 287 TQSVEYRSSGVLFNVTPSIKSR-TMDLKIQQQLSNFVTTETGVN--NSPTLIKRDVTTEV 343

Query: 361 ELPSGGTIVLAGL 373
            L  G  I+L GL
Sbjct: 344 SLADGDIILLGGL 356


>gi|192384691|dbj|BAG49616.1| HrcC [Pseudomonas viridiflava]
          Length = 671

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 10/201 (4%)

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           S   +++ + +FG   ++ G         DRF  +  + ALE       +A P++  +  
Sbjct: 319 SRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFAD--IQALEGQGVASVIARPSVLTLEN 376

Query: 283 QSASFT-SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSE 338
           Q A    S   ++  T         VT    G  L   P  ++   P R  L +  E  +
Sbjct: 377 QPAVIDFSRTAYITTTGERVANVQPVTA---GTSLRVIPRTIAGEQPNRFQLIVDIEDGQ 433

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            +      D P  +     T   +    ++V+ G   D+  + ++ +P+L  +P++GALF
Sbjct: 434 -LERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALF 492

Query: 399 RNSRFNREETEIFIAATPFLV 419
            + R      E     TP LV
Sbjct: 493 TSKRHEVSRRERLFILTPRLV 513


>gi|315497470|ref|YP_004086274.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48]
 gi|315415482|gb|ADU12123.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48]
          Length = 141

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 37/68 (54%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           KI +  N    + +P     V+V +P  ADV V   RT+Y+ G+  G+++V +    G+ 
Sbjct: 27  KIVVEKNHSTRVVLPASAGSVIVGNPEVADVTVVDSRTIYIMGRGFGRSSVSVTDSAGRN 86

Query: 109 MLNLDILI 116
           + + D+++
Sbjct: 87  IFDADVMV 94


>gi|212702669|ref|ZP_03310797.1| hypothetical protein DESPIG_00697 [Desulfovibrio piger ATCC 29098]
 gi|212673941|gb|EEB34424.1| hypothetical protein DESPIG_00697 [Desulfovibrio piger ATCC 29098]
          Length = 651

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 13/175 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + ALE     R L +P++  +    AS  +   + Y  VS +  ++ +   D G V
Sbjct: 375 FLARVTALEEDGQARVLGKPSVLTMDNVQASLENTSSY-YVPVSGNE-SSDLFKIDSGTV 432

Query: 316 LHFTPTVLSPGRIG----LRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSG 365
           L  TP ++ PG  G    +++   V +       +  V+  ++   +  K +T   +  G
Sbjct: 433 LKVTPHII-PGLPGQADSIKLMVSVQDDRDDGSNLFSVDPNNLSPIKQTKINTQAIVGEG 491

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            ++++ G   +     + GIP L  IPILG LF  +    +  E  I  TP +V+
Sbjct: 492 QSLLIGGHYYEIQSDAETGIPGLKNIPILGGLFGATGKKHQRMERLILITPRIVR 546


>gi|51103131|gb|AAT96274.1| hrcC [Pseudomonas viridiflava]
          Length = 753

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 10/201 (4%)

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           S   +++ + +FG   ++ G         DRF  +  + ALE       +A P++  +  
Sbjct: 401 SRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFAD--IQALEGQGVASVIARPSVLTLEN 458

Query: 283 QSASFT-SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSE 338
           Q A    S   ++  T         VT    G  L   P  ++   P R  L +  E  +
Sbjct: 459 QPAVIDFSRTAYITTTGERVANVQPVTA---GTSLRVIPRTIAGEQPNRFQLIVDIEDGQ 515

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            +      D P  +     T   +    ++V+ G   D+  + ++ +P+L  +P++GALF
Sbjct: 516 -LERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALF 574

Query: 399 RNSRFNREETEIFIAATPFLV 419
            + R      E     TP LV
Sbjct: 575 TSKRHEVSRRERLFILTPRLV 595


>gi|51103213|gb|AAT96354.1| hrcC [Pseudomonas viridiflava]
          Length = 671

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 10/201 (4%)

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           S   +++ + +FG   ++ G         DRF  +  + ALE       +A P++  +  
Sbjct: 319 SRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFAD--IQALEGQGVASVIARPSVLTLEN 376

Query: 283 QSASFT-SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSE 338
           Q A    S   ++  T         VT    G  L   P  ++   P R  L +  E  +
Sbjct: 377 QPAVIDFSRTAYITTTGERVANVQPVTA---GTSLRVIPRTIAGEQPNRFQLIVDIEDGQ 433

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            +      D P  +     T   +    ++V+ G   D+  + ++ +P+L  +P++GALF
Sbjct: 434 -LERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALF 492

Query: 399 RNSRFNREETEIFIAATPFLV 419
            + R      E     TP LV
Sbjct: 493 TSKRHEVSRRERLFILTPRLV 513


>gi|238755999|ref|ZP_04617324.1| Possible type III secretion system protein [Yersinia ruckeri ATCC
           29473]
 gi|238705788|gb|EEP98180.1| Possible type III secretion system protein [Yersinia ruckeri ATCC
           29473]
          Length = 558

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 96/250 (38%), Gaps = 26/250 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L + I ++ +  L ++G + SI    +G         GG     G  F+   + +  
Sbjct: 301 QVELSLWIIDISKKKLDEVGVRWSIGDLKAG---------GG-----GIAFNQSTLSNSA 346

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + A+ R    + ++ P +       A F +      +            T  YG 
Sbjct: 347 KFLARVDAISRTGDAQIVSRPIVLTQENIPALFDNNSSFYARLEGERVAKLEQVT--YGT 404

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEP-VIGVN----AGDMPSYRVRKADTTVELPSGGTIV 369
           ++   P +    ++ + +  E   P   G N     G +P        T   +    +++
Sbjct: 405 MVSVLPRISQGDQVEMDVNIEDGSPGRAGSNDVDQIGGLPIVNRTNISTVARIAKDSSLL 464

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + G  +D +++  E IPLL  IP LG LF + R + ++  I +    FL++P  + +   
Sbjct: 465 IGGYTRDQLEESDEKIPLLGSIPYLGRLF-SYRSSNQQKMIRV----FLIQPRLLNESES 519

Query: 430 PDDHYSVEDD 439
            D     E D
Sbjct: 520 WDGRQFSEKD 529


>gi|51103173|gb|AAT96315.1| HrcC [Pseudomonas viridiflava]
          Length = 753

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 10/201 (4%)

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           S   +++ + +FG   ++ G         DRF  +  + ALE       +A P++  +  
Sbjct: 401 SRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFAD--IQALEGQGVASVIARPSVLTLEN 458

Query: 283 QSASFT-SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSE 338
           Q A    S   ++  T         VT    G  L   P  ++   P R  L +  E  +
Sbjct: 459 QPAVIDFSRTAYITTTGERVANVQPVTA---GTSLRVIPRTIAGEQPNRFQLIVDIEDGQ 515

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            +      D P  +     T   +    ++V+ G   D+  + ++ +P+L  +P++GALF
Sbjct: 516 -LERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALF 574

Query: 399 RNSRFNREETEIFIAATPFLV 419
            + R      E     TP LV
Sbjct: 575 TSKRHEVSRRERLFILTPRLV 595


>gi|282890886|ref|ZP_06299403.1| putative type III secretion protein SctC [Parachlamydia
           acanthamoebae str. Hall's coccus]
 gi|281499240|gb|EFB41542.1| putative type III secretion protein SctC [Parachlamydia
           acanthamoebae str. Hall's coccus]
          Length = 956

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 13/212 (6%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           TG +  P+ S  A   G  +   G     G L   S   ++ A+   T    +  P +  
Sbjct: 686 TGQTLLPNASGLARLPGYNLGVLGQNVSLGNLTFDSIGALVKAIHDKTNTNIIMNPKILT 745

Query: 280 ISGQSASFTSGGQHLYKTVS-SSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQT 334
               +A    G    ++T S S+ G T +  +    + G     TP + +   + L I+ 
Sbjct: 746 EDNVTAEIFVGFNTPFQTQSISNIGGTPIANNFEFRNVGTTFKVTPFLGNNDIVTLEIRE 805

Query: 335 EVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           EVS  V      D+       P+ R+ +  T V +P    +VL+G+++D+  + +  +P 
Sbjct: 806 EVSS-VASTTTSDVLNTALPGPTTRLSRTTTRVHVPDKYFLVLSGMMQDEDTRRRVNVPC 864

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  +PI+GA F +   +  +  I I   P ++
Sbjct: 865 LGGLPIIGAAFSDKTVSDAKRNIMIFIRPEII 896


>gi|170077129|ref|YP_001733767.1| general secretion pathway protein D [Synechococcus sp. PCC 7002]
 gi|169884798|gb|ACA98511.1| general secretion pathway protein D [Synechococcus sp. PCC 7002]
          Length = 788

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +V L    T++LAG + +        +P+L  IPILG+LFR+S    E  E+    TP +
Sbjct: 698 SVRLRDDQTLILAGAIDERDITTTSKVPILGDIPILGSLFRSSSRTNERRELLFIITPQV 757

Query: 419 V 419
           +
Sbjct: 758 I 758


>gi|330963059|gb|EGH63319.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 649

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 19/230 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + +   I ++ R+ L ++  + +    S G         GG  + + G  S   + +   
Sbjct: 320 IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFDAGTSSTLFLQNASK 370

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSSSTGATSVTTHDYGV 314
           F   LHALE   +   +  P++  +  Q A    S  ++L  T   +     +T    G 
Sbjct: 371 FSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTATSERAADILPITA---GT 427

Query: 315 VLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLA 371
            L   P  L + G+  +++  ++ +  I V+      PS R     T   +   G++V+ 
Sbjct: 428 SLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVSTQAVIAEHGSLVIG 487

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419
           G    +       IPLL  IP +G L   SR +RE  + E     TP L+
Sbjct: 488 GFHGLEANDRIHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILTPRLI 536


>gi|281356795|ref|ZP_06243286.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316922|gb|EFB00945.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 502

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 32/65 (49%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             L SG   +L    K+   +   G+P LS+IPIL  LF  +  NRE+T  F+     L 
Sbjct: 412 CNLLSGEEKILTMWHKESEVEQTIGVPFLSEIPILKHLFSTTTINREKTWYFVTVRTVLA 471

Query: 420 KPVAM 424
            P ++
Sbjct: 472 HPESL 476


>gi|3228547|gb|AAC34756.1| HrcC [Pseudomonas syringae pv. tomato]
          Length = 700

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 10/195 (5%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-S 289
           AA   G  + +GG  S   + +   F   LHALE   +   +A P++  +  Q A    S
Sbjct: 347 AASEVGANLFDGGTSSTLFLQNASKFSAELHALEGNGSASVIANPSILTLENQPAVIDLS 406

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA--G 346
             ++L  T   +     +T    G  L   P  L + G+  +++  ++ +  I V+    
Sbjct: 407 RTEYLTPTSERAADILPITA---GTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTIND 463

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             PS R     T   +   G++V+ G    +       IPLL  IP +G L   SR +RE
Sbjct: 464 TQPSVRRGNVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSR-SRE 522

Query: 407 --ETEIFIAATPFLV 419
             + E     TP L+
Sbjct: 523 LSQRERLFILTPRLI 537


>gi|238759396|ref|ZP_04620561.1| Possible type III secretion system protein [Yersinia aldovae ATCC
           35236]
 gi|238702423|gb|EEP94975.1| Possible type III secretion system protein [Yersinia aldovae ATCC
           35236]
          Length = 557

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 89/211 (42%), Gaps = 27/211 (12%)

Query: 227 SKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAEPTL 277
           ++S   D G ++  E G+  V G         + D  +F   + A+ +    R ++ P +
Sbjct: 315 TQSKVDDLGVRW--EAGNIGVAGGSVTFNRSTLSDSKTFLAQIDAISKTGNARIVSRPVI 372

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
                  A F +     Y  V     AT +    YG ++   P +   G  G+ ++  + 
Sbjct: 373 LTQENVPALFDNN-TSFYARVEGDRVAT-LEQVTYGTMISVLPRL--SGGSGVEMEVNIE 428

Query: 338 EPVIG-------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           +  +         + G +P       +T   +    ++++ G  +D +++ +  IPLLS 
Sbjct: 429 DGGLNRDNTGKVADIGGLPEVNRTNINTVARIGRDKSLLIGGYTRDQVEEGETRIPLLSD 488

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKP 421
           IP+LG LF+    N+++  I I    FL++P
Sbjct: 489 IPLLGNLFKYRSHNQQKM-IRI----FLIQP 514


>gi|119897096|ref|YP_932309.1| general secretion pathway protein D [Azoarcus sp. BH72]
 gi|119669509|emb|CAL93422.1| general secretion pathway protein D [Azoarcus sp. BH72]
          Length = 580

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 86/209 (41%), Gaps = 28/209 (13%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           A   QV ++ TI EV      Q G      G+   P+   AA   G   +     S   +
Sbjct: 295 AARRQVMIEATIVEVALGDEYQQGIDWRRLGN---PNWRVAARGSGDANALTPTLSY--L 349

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302
            DR      L  LE   + + L+ P L+ ++ Q+A      + +Y  V +ST        
Sbjct: 350 SDRLDVR--LDLLETFGSAKILSSPRLSVLNNQTAMLKVVEEVVYFLVDASTTQYDDADR 407

Query: 303 -GATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMP 349
              T+ TT      G+V+  T  V + G I L ++  +S          P +G     +P
Sbjct: 408 EKTTATTTPQSVSVGMVMALTAQVSAGGEIILNVRPTISSISGFKDDPNPSLGSIPNRVP 467

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDI 378
             R R+ ++ + L SG T VL GL++D +
Sbjct: 468 QIRTREIESVLRLRSGETAVLGGLIEDKV 496


>gi|222147187|ref|YP_002548144.1| pilus subunit transmembrane protein [Agrobacterium vitis S4]
 gi|221734177|gb|ACM35140.1| pilus subunit transmembrane protein [Agrobacterium vitis S4]
          Length = 159

 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 38/69 (55%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           +N+  IL++   V  V++ +   AD  V  P+T+ L G++ G  N++L+   G  + +  
Sbjct: 47  MNQARILKLDRPVSKVIIGNEKVADATVADPKTIVLTGRSFGTTNLVLLDSQGNAIFDER 106

Query: 114 ILIERDIAH 122
           IL+  D A+
Sbjct: 107 ILVSIDEAN 115


>gi|302129976|ref|ZP_07255966.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 699

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 19/230 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + +   I ++ R+ L ++  + +    S G         GG  + + G  S   + +   
Sbjct: 320 IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFDAGTSSTLFLQNASK 370

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSSSTGATSVTTHDYGV 314
           F   LHALE   +   +  P++  +  Q A    S  ++L  T   +     +T    G 
Sbjct: 371 FSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTATSERAADILPITA---GT 427

Query: 315 VLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLA 371
            L   P  L + G+  +++  ++ +  I V+      PS R     T   +   G++V+ 
Sbjct: 428 SLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVSTQAVIAEHGSLVIG 487

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419
           G    +       IPLL  IP +G L   SR +RE  + E     TP L+
Sbjct: 488 GFHGLEANDRIHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILTPRLI 536


>gi|257092071|ref|YP_003165712.1| type II and III secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044595|gb|ACV33783.1| type II and III secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 770

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 35/56 (62%)

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T+ + G+++D +++ +E +P+L  IP+LG LF+        ++I +  TP +++
Sbjct: 544 GMTVAIGGMIRDSLERDEEKVPVLGDIPVLGYLFKRDVRASIRSQIVLLITPRVLE 599


>gi|162533078|ref|NP_791216.2| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213968270|ref|ZP_03396414.1| outer membrane type III secretion hrcc [Pseudomonas syringae pv.
           tomato T1]
 gi|301383405|ref|ZP_07231823.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061709|ref|ZP_07253250.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato K40]
 gi|119388972|gb|AAO54911.2| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213926908|gb|EEB60459.1| outer membrane type III secretion hrcc [Pseudomonas syringae pv.
           tomato T1]
          Length = 699

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 19/230 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + +   I ++ R+ L ++  + +    S G         GG  + + G  S   + +   
Sbjct: 320 IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFDAGTSSTLFLQNASK 370

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSSSTGATSVTTHDYGV 314
           F   LHALE   +   +  P++  +  Q A    S  ++L  T   +     +T    G 
Sbjct: 371 FSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTATSERAADILPITA---GT 427

Query: 315 VLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLA 371
            L   P  L + G+  +++  ++ +  I V+      PS R     T   +   G++V+ 
Sbjct: 428 SLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVSTQAVIAEHGSLVIG 487

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419
           G    +       IPLL  IP +G L   SR +RE  + E     TP L+
Sbjct: 488 GFHGLEANDRIHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILTPRLI 536


>gi|330872930|gb|EGH07079.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 699

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 19/230 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + +   I ++ R+ L ++  + +    S G         GG  + + G  S   + +   
Sbjct: 320 IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFDAGTSSTLFLQNASK 370

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSSSTGATSVTTHDYGV 314
           F   LHALE   +   +  P++  +  Q A    S  ++L  T   +     +T    G 
Sbjct: 371 FSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTATSERAADILPITA---GT 427

Query: 315 VLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLA 371
            L   P  L + G+  +++  ++ +  I V+      PS R     T   +   G++V+ 
Sbjct: 428 SLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVSTQAVIAEHGSLVIG 487

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419
           G    +       IPLL  IP +G L   SR +RE  + E     TP L+
Sbjct: 488 GFHGLEANDRIHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILTPRLI 536


>gi|301019450|ref|ZP_07183622.1| bacterial type II and III secretion system protein [Escherichia
           coli MS 196-1]
 gi|299882211|gb|EFI90422.1| bacterial type II and III secretion system protein [Escherichia
           coli MS 196-1]
          Length = 358

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 29/253 (11%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQ 195
           V  +SD  +L G V    ++  AV   ++    SG + Y N    +  ++L   G  ED 
Sbjct: 60  VAYLSD--ILGGYVSGSFNNSGAVISDDSLKGSSGASNYIN----RTGDILVYYGTKEDI 113

Query: 196 VTLK--VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LD 252
             LK  VT  +   D +   G+   +  S S  S    A    K +S+  + SV    LD
Sbjct: 114 AILKTLVTSLDTMSDEVVVSGYVFEVQTSQSDGSGILLA---AKILSDKFNISVGAAGLD 170

Query: 253 RF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---TVSSSTG 303
            F      S + + + L+  +    ++ P L   +  SASF+ G         TV+++T 
Sbjct: 171 NFINIRTGSIDAIFNLLKTDSRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTT 230

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTV 360
             SV     GV+ + TP++ S   + L+IQ ++S  V    GVN  + P+   R   T V
Sbjct: 231 TQSVEYRSSGVLFNVTPSIKSR-TMDLKIQQQLSNFVTTETGVN--NSPTLIKRDVTTEV 287

Query: 361 ELPSGGTIVLAGL 373
            L  G  I+L GL
Sbjct: 288 SLADGDIILLGGL 300


>gi|167564548|ref|ZP_02357464.1| Type II secretory pathway, component PulD [Burkholderia
           oklahomensis EO147]
          Length = 400

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 7/138 (5%)

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHD 311
           +  + AL   +  + ++ P +  +SG+      G Q   ++  S  G+      S+T  D
Sbjct: 260 DAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQD 319

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVL 370
            G++    PTV+    I +++  E+S+ V      D  P+   R+  T   +  G  IVL
Sbjct: 320 AGLIFDVEPTVMR-EVIEVKVHEEISDFVATKTGVDTSPTKNTRQLQTVTRMKDGEVIVL 378

Query: 371 AGLLKDDIQQLKEGIPLL 388
            GL++D     + G   L
Sbjct: 379 GGLIQDRNATARSGYAWL 396


>gi|150398537|ref|YP_001329004.1| hypothetical protein Smed_3348 [Sinorhizobium medicae WSM419]
 gi|150030052|gb|ABR62169.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 140

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +L++   V  V++ +   AD  V   +T+ L G+N G  N++++  DG  M++  IL+  
Sbjct: 45  VLKLDRPVSKVIIGNSDVADATVADAKTIVLTGRNFGTTNLVILDQDGNAMVDERILVSI 104

Query: 119 D 119
           D
Sbjct: 105 D 105


>gi|171315562|ref|ZP_02904798.1| putative bacteriophage-related lipoprotein [Burkholderia ambifaria
           MEX-5]
 gi|171099399|gb|EDT44137.1| putative bacteriophage-related lipoprotein [Burkholderia ambifaria
           MEX-5]
          Length = 142

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 280 ISGQSASFTSGGQ-----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           +SGQS     G Q      +     S T   SV   D G++    PTV++   I +++  
Sbjct: 1   MSGQSVRLNVGSQVPTLGSISYQGPSGTPVQSVQYQDAGLIFDVQPTVMA-DSIQVKLNE 59

Query: 335 EVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           E+S  V    GVN  + P+   R+  TTV L  G  +VL GL++D
Sbjct: 60  EMSSFVATSTGVN--NSPTKNTRQMATTVNLKDGEVVVLGGLVQD 102


>gi|297621836|ref|YP_003709973.1| putative type III secretion protein SctC [Waddlia chondrophila WSU
            86-1044]
 gi|297377137|gb|ADI38967.1| putative type III secretion protein SctC [Waddlia chondrophila WSU
            86-1044]
          Length = 1115

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 20/176 (11%)

Query: 235  GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
            G +    G  F+  G L      T  H  + +   + +  P +     ++A    G    
Sbjct: 878  GRRLTHNGTQFATLGAL-----VTAQHNRQNS---KVILNPKIITEDNKTAELFVGINTR 929

Query: 295  YKTVSSSTGATSVTT-----HDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIG--- 342
            ++T S S    SV T      D G  +  TP + +   + L I+ EVS    + V G   
Sbjct: 930  FQTNSISNDEGSVITTNFEYRDVGTTIRVTPLIGNGDIVTLEIEEEVSRVAPQAVQGGSD 989

Query: 343  VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            +   + P+  + +  TTV +P    ++++GL++D+    +   P L  IPI+GA F
Sbjct: 990  IQDPNAPTTSISRTSTTVHVPDRHFVIISGLIQDEKIHSRNQFPCLGGIPIIGAAF 1045


>gi|222084464|ref|YP_002542993.1| hypothetical protein Arad_0357 [Agrobacterium radiobacter K84]
 gi|221721912|gb|ACM25068.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 139

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +L++   V  V+V +   AD  V  P+T+ L G++ G  N++L+  DG  +++  IL+  
Sbjct: 41  VLKLDRPVSKVIVGNAQVADATVADPKTIVLTGRSFGTTNIVLLDADGNAIVDERILVSI 100

Query: 119 D 119
           D
Sbjct: 101 D 101


>gi|187919918|ref|YP_001888949.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia phytofirmans PsJN]
 gi|187718356|gb|ACD19579.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia phytofirmans PsJN]
          Length = 637

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 8/176 (4%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           +H LE++   R L+ P +  ++   A  +S    LY  V+ +     +   D G+ L  T
Sbjct: 405 IHLLEQSGKARILSRPQVLTLNNSEAILSSR-NSLYVRVAGNQD-VDLYNVDTGLTLKVT 462

Query: 320 PTVLSPG----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PTV S       I L +Q +       ++   +P        T   +  G +++L G   
Sbjct: 463 PTVESGSDSARNILLSVQIDDGAFDSSLSVDGIPKVNNHSIVTQAVVADGESLLLGGYEY 522

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +  Q     + +L  +P +GALFR+++   E  E  I  TP  VKP+ ++ ++ PD
Sbjct: 523 ERSQTASSQVHVLGHLPYVGALFRDTQTQVERLERLILITPR-VKPM-VKLVTEPD 576


>gi|85058539|ref|YP_454241.1| type III secretion apparatus InvG [Sodalis glossinidius str.
           'morsitans']
 gi|84779059|dbj|BAE73836.1| type III secretion apparatus InvG [Sodalis glossinidius str.
           'morsitans']
          Length = 586

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            ++P     +  T   +P G ++++ G  +D       GIP+L  IP LG LF    +  
Sbjct: 473 AELPLVNTTQISTEARVPKGSSLLVGGYSRDQRVNAGWGIPVLRDIPFLGRLF---DYRY 529

Query: 406 EETEIFIAATPFLVKP 421
           ++T+ F+    FL++P
Sbjct: 530 KQTKQFVRM--FLIQP 543


>gi|51103005|gb|AAT96152.1| HrcC [Pseudomonas viridiflava]
          Length = 697

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 10/191 (5%)

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQH 293
           GG  + + G  S   + +   F   LHALE   +   +  P++  +  Q A    S  ++
Sbjct: 348 GGVNMFDAGTTSTLFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY 407

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPS 350
           +  T         +T    G  L   P  L   G+  +++  ++ +  I V+    D PS
Sbjct: 408 ITATSERVANIEPITA---GTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDVSDINADQPS 464

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ET 408
            R     T   +   G++V+ G    +       IPLL  IP +G L   SR +RE    
Sbjct: 465 VRKGNVSTQAVIAEHGSLVVGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSR-SREINHR 523

Query: 409 EIFIAATPFLV 419
           E     TP L+
Sbjct: 524 ERLFILTPRLI 534


>gi|150026329|ref|YP_001297155.1| general secretion pathway protein D precursor [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772870|emb|CAL44354.1| Putative bacterial general secretion pathway protein D precursor
           [Flavobacterium psychrophilum JIP02/86]
          Length = 720

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 83/194 (42%), Gaps = 21/194 (10%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG--------GQHL 294
           G  ++  V+  F+    L A+E    ++  + P L+ ++G  A  + G         Q+ 
Sbjct: 535 GSLNIGSVVPNFNLS--LKAMESNGNLKIRSAPRLSTLNGHKAYLSIGETTYYVVTNQNF 592

Query: 295 YKT-VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPS 350
           Y + +  ++   +    D  + +   P V   G+I + I   Q+  +   +  NA   P 
Sbjct: 593 YGSQIPQTSEVKNYQPIDAELSVTIMPLVSGDGQITMDIKVIQSSFNGQKVDKNAP--PG 650

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R+  + + +     IVL GL +        G+P+L++IPI+  LF + +  RE++  
Sbjct: 651 INSREFTSIIRVKDQDLIVLGGLEEKVKNDSGSGVPILARIPIIKWLFSSRK--REDSN- 707

Query: 411 FIAATPFLVKPVAM 424
                  L+KP  +
Sbjct: 708 --KKLTVLIKPTVI 719


>gi|82524589|ref|YP_406184.1| MxiD [Shigella dysenteriae Sd197]
 gi|81243987|gb|ABB64696.1| MxiD [Shigella dysenteriae Sd197]
          Length = 566

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253
            + L + I ++ +  L  +G     T S       F   FG  F +S     S    LD 
Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F   + AL +      ++ P +       A F +        V     +    T  YG
Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407

Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +++  P   S G+I + +  E        +      N   +P     K  T   +P G 
Sbjct: 408 TLINVIPRFSSRGQIEMSLTIEDGTGNSLSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G   +        IP LS IP++G +F+      + + I      FL++P  +++
Sbjct: 468 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 522

Query: 427 LS 428
            S
Sbjct: 523 SS 524


>gi|148826860|ref|YP_001291613.1| putative phage-like secreted protein [Haemophilus influenzae
           PittGG]
 gi|148718102|gb|ABQ99229.1| putative phage-related secreted protein [Haemophilus influenzae
           PittGG]
          Length = 377

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 10/155 (6%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSVTTHDY- 312
           + + ++      +    ++ PTL   SG   +F+ G    +   V+      +V + +Y 
Sbjct: 214 NLDAMIELFRTDSRFHVVSSPTLRVKSGSKGNFSVGSDVPVLGAVTYDRDGRAVQSIEYR 273

Query: 313 --GVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGT 367
             GV+    PT+ +   I L+I  ++S  V    GVN    P+   R   T V L SG  
Sbjct: 274 SSGVIFDIQPTIKNNA-IDLKINQQLSNFVKTDTGVNQS--PTLIKRDIVTDVTLKSGDI 330

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +VL GL ++ I + + G   L K  + G    NS+
Sbjct: 331 VVLGGLAENKITEGETGFSFLPKGILSGRSKSNSK 365


>gi|62297323|sp|P35819|PILQ_NEIGO RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           AltName: Full=Outer membrane protein omc; Flags:
           Precursor
 gi|1173875|gb|AAC43603.1| PilQ [Neisseria gonorrhoeae]
 gi|1589217|prf||2210365A pilQ gene
          Length = 720

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   + S G  S  T     VL  T
Sbjct: 558 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLT 617

Query: 320 PTV-LSP-GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            T  ++P G+I + ++     P    +  + +     +  +T   + +GGT+++ G+ ++
Sbjct: 618 VTANITPDGQIIMTVKINKDSPRQCASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEE 677

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           +       +PLL+  P+     ++S  NR
Sbjct: 678 NNGNTLTKVPLLATSPLSATSLKHSGKNR 706


>gi|51103060|gb|AAT96206.1| HrcC [Pseudomonas viridiflava]
          Length = 697

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 10/191 (5%)

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQH 293
           GG  + + G  S   + +   F   LHALE   +   +  P++  +  Q A    S  ++
Sbjct: 348 GGVNMFDAGTTSTLFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY 407

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPS 350
           +  T         +T    G  L   P  L   G+  +++  ++ +  I V+    D PS
Sbjct: 408 ITATSERVANIEPITA---GTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDVSDINADQPS 464

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ET 408
            R     T   +   G++V+ G    +       IPLL  IP +G L   SR +RE    
Sbjct: 465 VRKGNVSTQAVIAEHGSLVVGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSR-SREINHR 523

Query: 409 EIFIAATPFLV 419
           E     TP L+
Sbjct: 524 ERLFILTPRLI 534


>gi|32307038|gb|AAP79008.1| MxiD [Shigella flexneri]
          Length = 566

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 76/213 (35%), Gaps = 20/213 (9%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253
            + L + I ++ +  L  +G     T S       F   FG  F +S     S    LD 
Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F   + AL +      ++ P +       A F +        V     +    T  YG
Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407

Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +++  P   S G+I + +  E        +      N   +P     K  T   +P G 
Sbjct: 408 TLINVIPRFSSQGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           ++++ G   +        IP LS IP++G +F+
Sbjct: 468 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK 500


>gi|326794354|ref|YP_004312174.1| type III secretion outer membrane pore, YscC/HrcC family
           [Marinomonas mediterranea MMB-1]
 gi|326545118|gb|ADZ90338.1| type III secretion outer membrane pore, YscC/HrcC family
           [Marinomonas mediterranea MMB-1]
          Length = 713

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 11/236 (4%)

Query: 190 IAGEDQ----VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           IA  DQ    + +   I ++ R+ L ++GF     G S              F+  G   
Sbjct: 319 IAQLDQPRHVIEIDAIILDIDREKLSELGFNWQ--GGSGNTEAKINTSGADPFLKSGSSA 376

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           +V  + D   F   + ALE       +A P++  I  Q A          K+        
Sbjct: 377 TVT-IQDFDHFFAQIRALETDGDASLVANPSILTIENQPAIIDFNNTAFIKSTGERVANV 435

Query: 306 SVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELP 363
           S  T   G  L   P ++ S     +++  ++ +  I  N+G D PS       T   + 
Sbjct: 436 SEITA--GTSLQVLPRLIDSEAERVIQLFLDIEDGDIESNSGADTPSVSKGSISTQAVIK 493

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +  ++V+ G   +   Q +  +PLL  +P +G LF  +     + E     TP LV
Sbjct: 494 TERSLVIGGFKVEQNTQRESKVPLLGDLPGIGKLFSYTSKAHSKRERLFIITPRLV 549


>gi|89885888|ref|YP_516086.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89347886|gb|ABD72088.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 622

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 124/300 (41%), Gaps = 36/300 (12%)

Query: 146 VLHGMVRTIQDSQRAVEL--SETFLSQSGRNQY--ANSSSKKVMN--LLNI-AGEDQVTL 198
           V  GM  TI      V+L  S+ +L + GR+    AN S+ + ++  L N+      +  
Sbjct: 141 VFAGMANTI------VKLGASDAYLDRQGRSLTFRANRSAMRGIDRFLENVRETRSLIVF 194

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--DFGGKFVSEGGDFSVKGVL--DRF 254
              I EV      Q G + +    + GP  S  A    GG  V++ G      +    RF
Sbjct: 195 DTYIYEVNLTDGAQTGIKWNKLAMAIGPGGSLGALGAVGGSTVADSGGMGFSAIYKGSRF 254

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSST-GATSVTT 309
             +     L+    ++T+A+P +  +SG    F +G    Y     T SS+T   T+V+T
Sbjct: 255 DLDAFFSFLQTQGNVKTIAQPKIAIMSGSKGGFKAGSTTKYVSQVGTNSSTTINQTTVST 314

Query: 310 HDY--GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTV 360
                G+ L  T  V S G +  RI+  +SE +I  N+ +       +P    R+  T +
Sbjct: 315 DTAVSGLDLSLTGDV-SDGTVYARIRISLSE-LIRFNSFEALGTSLQLPQTTSRELTTAI 372

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               G  ++L G+          G+P   K  +L     N +  R  TE+ +   P +V+
Sbjct: 373 RARPGDVVLLGGVNNSSESSDYSGLP-GEKGQMLVPTSSNKKVAR--TELVMVMKPKIVR 429


>gi|182440996|dbj|BAG24121.1| HrcC [Pseudomonas cichorii]
          Length = 672

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +++ + +FG   ++ G         DRF  +  + ALE       +A P++  +  Q A 
Sbjct: 324 ARAGSVNFGSSLLTGGSATLSISDFDRFFAD--IQALEGQGGASVIARPSVLTLENQPAV 381

Query: 287 FT-SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIG 342
              S   ++  T        SVT    G  L   P  ++     R  L I  E  + +  
Sbjct: 382 IDFSRTAYITATGERVANVQSVTA---GTSLQVIPRTIAGAQANRFQLIIDIEDGQ-LDR 437

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
              G+ P  +     T   +    ++V+ G   D+  Q  + +PLL  +P+LG LF + R
Sbjct: 438 SRDGETPDVKRGTVSTQAVISENRSLVIGGFHVDETGQHHDKVPLLGDLPVLGPLFTSKR 497

Query: 403 FNREETEIFIAATPFLV 419
                 E     TP L+
Sbjct: 498 QEVSRRERLFILTPRLI 514


>gi|15963890|ref|NP_384243.1| hypothetical protein SMc04115 [Sinorhizobium meliloti 1021]
 gi|307315787|ref|ZP_07595301.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
 gi|307320422|ref|ZP_07599839.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|15073065|emb|CAC41524.1| Hypothetical protein SMc04115 [Sinorhizobium meliloti 1021]
 gi|306893988|gb|EFN24757.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306898555|gb|EFN29228.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
          Length = 138

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +L++   V  V++ +   AD  V   +T+ L G+N G  N++++  DG  M++  IL+  
Sbjct: 43  VLKLDRPVSKVIIGNAEVADATVADAKTIVLTGRNFGTTNLVILDQDGNAMVDERILVSI 102

Query: 119 D 119
           D
Sbjct: 103 D 103


>gi|45504747|gb|AAS66838.1| YsaC [Sodalis glossinidius]
          Length = 500

 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            ++P     +  T   +P G ++++ G  +D       GIP+L  IP LG LF    +  
Sbjct: 387 AELPLVNTTQISTEARVPKGSSLLVGGYSRDQRVNAGWGIPVLRDIPFLGRLF---DYRY 443

Query: 406 EETEIFIAATPFLVKP 421
           ++T+ F+    FL++P
Sbjct: 444 KQTKQFVRM--FLIQP 457


>gi|333011815|gb|EGK31216.1| hypothetical protein SFK227_5449 [Shigella flexneri K-227]
 gi|333011862|gb|EGK31255.1| hypothetical protein SFK227_5390 [Shigella flexneri K-227]
          Length = 566

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253
            + L + I ++ +  L  +G     T S       F   FG  F +S     S    LD 
Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F   + AL +      ++ P +       A F +        V     +    T  YG
Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407

Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +++  P   S G+I + +  E        +      N   +P     K  T   +P G 
Sbjct: 408 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G   +        IP LS IP++G +F+      + + I      FL++P  +++
Sbjct: 468 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 522

Query: 427 LS 428
            S
Sbjct: 523 SS 524


>gi|187734437|ref|YP_001883208.1| type III secretion outer membrane protein MxiD [Shigella boydii CDC
           3083-94]
 gi|187426933|gb|ACD06208.1| type III secretion outer membrane protein MxiD [Shigella boydii CDC
           3083-94]
          Length = 566

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253
            + L + I ++ +  L  +G     T S       F   FG  F +S     S    LD 
Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F   + AL +      ++ P +       A F +        V     +    T  YG
Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407

Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +++  P   S G+I + +  E        +      N   +P     K  T   +P G 
Sbjct: 408 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G   +        IP LS IP++G +F+      + + I      FL++P  +++
Sbjct: 468 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 522

Query: 427 LS 428
            S
Sbjct: 523 SS 524


>gi|330957480|gb|EGH57740.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 703

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 24/246 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+++  + + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 311 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNMFD 360

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSS 300
            G  S   + +   F   LH LE   +   +  P++  +  Q A    S  ++L  T   
Sbjct: 361 AGTTSTMFIQNAGKFTAELHTLEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTATSER 420

Query: 301 STGATSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKAD 357
                 +T    G  L  TP  L + G+  +++  ++ +  I ++      PS R     
Sbjct: 421 VANIEPITA---GTSLQVTPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVS 477

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR----FNREETEIFIA 413
           T   +   G++V+ G    +       IPLL  IP +G L   SR     NRE   +FI 
Sbjct: 478 TQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSNRE--RLFI- 534

Query: 414 ATPFLV 419
            TP L+
Sbjct: 535 LTPRLI 540


>gi|194435190|ref|ZP_03067420.1| type III secretion outer membrane pore, YscC/HrcC family [Shigella
           dysenteriae 1012]
 gi|194416569|gb|EDX32708.1| type III secretion outer membrane pore, YscC/HrcC family [Shigella
           dysenteriae 1012]
          Length = 566

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253
            + L + I ++ +  L  +G     T S       F   FG  F +S     S    LD 
Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F   + AL +      ++ P +       A F +        V     +    T  YG
Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407

Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +++  P   S G+I + +  E        +      N   +P     K  T   +P G 
Sbjct: 408 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G   +        IP LS IP++G +F+      + + I      FL++P  +++
Sbjct: 468 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 522

Query: 427 LS 428
            S
Sbjct: 523 SS 524


>gi|74314944|ref|YP_313362.1| MxiD [Shigella sonnei Ss046]
 gi|73858421|gb|AAZ91127.1| MxiD [Shigella sonnei Ss046]
          Length = 566

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253
            + L + I ++ +  L  +G     T S       F   FG  F +S     S    LD 
Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F   + AL +      ++ P +       A F +        V     +    T  YG
Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407

Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +++  P   S G+I + +  E        +      N   +P     K  T   +P G 
Sbjct: 408 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G   +        IP LS IP++G +F+      + + I      FL++P  +++
Sbjct: 468 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 522

Query: 427 LS 428
            S
Sbjct: 523 SS 524


>gi|2495097|sp|Q55293|MXID_SHISO RecName: Full=Outer membrane protein mxiD; Flags: Precursor
 gi|829072|dbj|BAA09154.1| ORF14 [Shigella sonnei]
          Length = 566

 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253
            + L + I ++ +  L  +G     T S       F   FG  F +S     S    LD 
Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F   + AL +      ++ P +       A F +        V     +    T  YG
Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407

Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +++  P   S G+I + +  E        +      N   +P     K  T   +P G 
Sbjct: 408 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G   +        IP LS IP++G +F+      + + I      FL++P  +++
Sbjct: 468 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 522

Query: 427 LS 428
            S
Sbjct: 523 SS 524


>gi|83816469|ref|YP_445404.1| general (Type II) secretion pathway (GSP) D protein, putative
           [Salinibacter ruber DSM 13855]
 gi|83757863|gb|ABC45976.1| general (Type II) secretion pathway (GSP) D protein, putative
           [Salinibacter ruber DSM 13855]
          Length = 426

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 74/187 (39%), Gaps = 23/187 (12%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L+ +E+    RT+A P +T  SG+       GQ +    +   G T       G++
Sbjct: 194 FRRFLNLVEQDNVGRTVANPQVTVQSGEQGEIQI-GQDVPIQTTDFAGNTVTEFFSTGII 252

Query: 316 LHFTPTVLSPG-------------RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           +  TPT+LS                + + ++   S+P     +G  P     +A T + L
Sbjct: 253 IDVTPTLLSQPVADTSGAPVLDFIHLNVDVEDSNSQP-----SGSGPIINRNQASTQILL 307

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIP--ILGA--LFRNSRFNREETEIFIAATPFL 418
                  + GL+       + G+P+L  +P  + G   +F +   N  + E+ I     +
Sbjct: 308 LDNEATAIGGLISTQKTTRRSGVPILKDLPGWVFGLRYIFGSETTNVTKQELLIVLRAEI 367

Query: 419 VKPVAMR 425
           V P+  R
Sbjct: 368 VDPLRAR 374


>gi|144897438|emb|CAM74302.1| conserved hypothetical protein, secreted [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 138

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 30/52 (57%)

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
           V  V++ DP  ADV V S   + LFGK  G  ++ ++G +G  +L+  +++ 
Sbjct: 40  VAQVVIGDPKVADVSVDSAGRIQLFGKRAGSTSLTVLGRNGAVLLDHTVVVR 91


>gi|323166425|gb|EFZ52190.1| hypothetical protein SS53G_3269 [Shigella sonnei 53G]
          Length = 476

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253
            + L + I ++ +  L  +G     T S       F   FG  F +S     S    LD 
Sbjct: 210 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 259

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F   + AL +      ++ P +       A F +        V     +    T  YG
Sbjct: 260 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 317

Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +++  P   S G+I + +  E        +      N   +P     K  T   +P G 
Sbjct: 318 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 377

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G   +        IP LS IP++G +F+      + + I      FL++P  +++
Sbjct: 378 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 432

Query: 427 LS 428
            S
Sbjct: 433 SS 434


>gi|31983567|ref|NP_858278.1| outermembrane protein MxiD [Shigella flexneri 2a str. 301]
 gi|18462559|gb|AAL72331.1| MxiD, outermembrane protein of the secretin family, component of
           the Mxi-Spa secretion machinery [Shigella flexneri 2a
           str. 301]
 gi|281603900|gb|ADA76883.1| MxiD, outermembrane protein of the secretin family, component of
           the Mxi-Spa secretion machinery [Shigella flexneri
           2002017]
 gi|333003155|gb|EGK22704.1| hypothetical protein SFK218_2878 [Shigella flexneri K-218]
 gi|333020387|gb|EGK39651.1| hypothetical protein SFK304_1148 [Shigella flexneri K-304]
          Length = 566

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFS 246
           L+IA +  + L + I ++ +  L  +G     T S       F   FG  F +S     S
Sbjct: 294 LDIA-KRHIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIS 345

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
               LD   F   + AL +      ++ P +       A F +        V     +  
Sbjct: 346 T---LDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLE 402

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTT 359
             T  YG +++  P   S G+I + +  E        +      N   +P     K  T 
Sbjct: 403 HVT--YGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTI 460

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P G ++++ G   +        IP LS IP++G +F+      + + I      FL+
Sbjct: 461 ARVPQGKSLLIGGYTHETNSNEIISIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLI 515

Query: 420 KPVAMRDLS 428
           +P  +++ S
Sbjct: 516 QPREIKESS 524


>gi|6016255|sp|Q01723|HRPH_PSESY RecName: Full=Hypersensitivity response secretion protein hrpH;
           Flags: Precursor
 gi|2934881|gb|AAC05014.1| envelope protein [Pseudomonas syringae]
 gi|148746178|gb|AAB05085.2| HrcC [Pseudomonas syringae pv. syringae]
          Length = 701

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 102/246 (41%), Gaps = 24/246 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGK-FV 239
           +K++  L+++  + + +   I ++ R+ L ++  + +   GS +G +  F A      F+
Sbjct: 309 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVNGGANMFDAGTSSTLFI 367

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTV 298
              G F+ +           LHALE   +   +  P++  +  Q A    S  ++L  T 
Sbjct: 368 QNAGKFAAE-----------LHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTATS 416

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRK 355
                   +T    G  L  TP  L   G+  +++  ++ +  I ++      PS R   
Sbjct: 417 ERVANIEPITA---GTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGN 473

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIA 413
             T   +   G++V+ G    +       +PLL  IP +G L   SR +RE  + E    
Sbjct: 474 VSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSR-SRELSQRERLFI 532

Query: 414 ATPFLV 419
            TP L+
Sbjct: 533 LTPRLI 538


>gi|85059260|ref|YP_454962.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
 gi|84779780|dbj|BAE74557.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 494

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 30/227 (13%)

Query: 190 IAGEDQ----VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKF---VS 240
           IA  DQ    + + V I +V    + ++G   S   S  G   SF +D    G F   +S
Sbjct: 258 IAALDQRPQMIEIAVMIIDVDVGDINKLGIDWSGAMSLGGSGFSFNSDGDIRGGFSSVIS 317

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              DF V+           L+ LE+      L++P++  ++   A         Y  +  
Sbjct: 318 NTNDFMVR-----------LNVLEQRAHAYILSQPSVVTLNNIQAVLDKNVT-FYTKLQG 365

Query: 301 STGAT--SVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
              A   SVTT   G +L  TP ++       I L +  +  +    ++A D +P  +  
Sbjct: 366 DKFAKLESVTT---GSLLRVTPRLMEDQGKQNIMLSLNIQDGQQTSPLSATDPLPQVQNS 422

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +  +   L  G +++L G  +D  +Q ++ IPLL  IP+LG LFR+S
Sbjct: 423 EIASQATLRPGQSLLLGGFQQDKQKQGQKKIPLLGDIPLLGHLFRSS 469


>gi|331015110|gb|EGH95166.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 699

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 19/230 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + +   I ++ R+ L ++  + +    S G         GG  + + G  S   + +   
Sbjct: 320 IEIDAVILDIDRNELAELSSRWNFNTGSVG---------GGANLFDAGTSSTLFLQNASK 370

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSSSTGATSVTTHDYGV 314
           F   LHALE   +   +  P++  +  Q A    S  ++L  T   +     +T    G 
Sbjct: 371 FSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTATSERAADILPITA---GT 427

Query: 315 VLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLA 371
            L   P  L + G+  +++  ++ +  I V+      PS R     T   +   G++V+ 
Sbjct: 428 SLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVSTQAVIAEHGSLVIG 487

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419
           G    +       IPLL  IP +G L   SR +RE  + E     TP L+
Sbjct: 488 GFHGLEANDRIHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILTPRLI 536


>gi|66044451|ref|YP_234292.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255158|gb|AAY36254.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. syringae B728a]
          Length = 700

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 10/191 (5%)

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQH 293
           GG  + + G  S   + +   F   LHALE   +   +  P++  +  Q A    S  ++
Sbjct: 351 GGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY 410

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPS 350
           L  T         +T    G  L  TP  L   G+  +++  ++ +  I ++      PS
Sbjct: 411 LTATSERVANIEPITA---GTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPS 467

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ET 408
            R     T   +   G++V+ G    +       +PLL  IP +G L   SR +RE  + 
Sbjct: 468 VRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSR-SRELSQR 526

Query: 409 EIFIAATPFLV 419
           E     TP L+
Sbjct: 527 ERLFILTPRLI 537


>gi|120586851|ref|YP_961196.1| YscC/HrcC family type III secretion outer membrane protein
           [Desulfovibrio vulgaris subsp. vulgaris DP4]
 gi|120564265|gb|ABM30008.1| type III secretion outer membrane pore, YscC/HrcC family
           [Desulfovibrio vulgaris DP4]
          Length = 624

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 37/73 (50%)

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P  +  K +T   + +G ++++ G   +      +G+P+L  IP+LG LF+      + 
Sbjct: 465 IPPIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKR 524

Query: 408 TEIFIAATPFLVK 420
            E  I  TP +V+
Sbjct: 525 MERLILITPKVVR 537


>gi|309586|gb|AAA25456.1| outer membrane protein [Neisseria gonorrhoeae]
          Length = 711

 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A E  +  +TLA P +   + + A   SG +  +   + S G  S  T     VL  T
Sbjct: 549 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLT 608

Query: 320 PTV-LSP-GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            T  ++P G+I + ++     P    +  + +     +  +T   + +GGT+++ G+ ++
Sbjct: 609 VTANITPDGQIIMTVKINKDSPRQCASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEE 668

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           +       +PLL+  P+     ++S  NR
Sbjct: 669 NNGNTLTKVPLLATSPLSATSLKHSGKNR 697


>gi|46562147|ref|YP_009152.1| type III secretion system protein YscC family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46447684|gb|AAS94350.1| type III secretion system protein, YscC family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 624

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 37/73 (50%)

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P  +  K +T   + +G ++++ G   +      +G+P+L  IP+LG LF+      + 
Sbjct: 465 IPPIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKR 524

Query: 408 TEIFIAATPFLVK 420
            E  I  TP +V+
Sbjct: 525 MERLILITPKVVR 537


>gi|330895850|gb|EGH28136.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 640

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 102/246 (41%), Gaps = 24/246 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGK-FV 239
           +K++  L+++  + + +   I ++ R+ L ++  + +   GS +G +  F A      F+
Sbjct: 248 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVNGGANMFDAGTSSTLFI 306

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTV 298
              G F+ +           LHALE   +   +  P++  +  Q A    S  ++L  T 
Sbjct: 307 QNAGKFAAE-----------LHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTATS 355

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRK 355
                   +T    G  L  TP  L   G+  +++  ++ +  I ++      PS R   
Sbjct: 356 ERVANIEPITA---GTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGN 412

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIA 413
             T   +   G++V+ G    +       +PLL  IP +G L   SR +RE  + E    
Sbjct: 413 VSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGKLLFQSR-SRELSQRERLFI 471

Query: 414 ATPFLV 419
            TP L+
Sbjct: 472 LTPRLI 477


>gi|13449092|ref|NP_085308.1| Type III secretion protein [Shigella flexneri 5a]
 gi|547951|sp|Q04641|MXID_SHIFL RecName: Full=Outer membrane protein mxiD; Flags: Precursor
 gi|13310640|gb|AAK18464.1|AF348706_153 Type III secretion protein [Shigella flexneri 5a]
 gi|47042|emb|CAA47644.1| MXID [Shigella flexneri]
 gi|12329089|emb|CAC05820.1| MxiD, outermembrane protein of the secretin family, component of
           the Mxi-Spa secretion machinery [Shigella flexneri]
          Length = 566

 Score = 37.7 bits (86), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253
            + L + I ++ +  L  +G     T S       F   FG  F +S     S    LD 
Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F   + AL +      ++ P +       A F +        V     +    T  YG
Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407

Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +++  P   S G+I + +  E        +      N   +P     K  T   +P G 
Sbjct: 408 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G   +        IP LS IP++G +F+      + + I      FL++P  +++
Sbjct: 468 SLLIGGYTHETNSNEIISIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 522

Query: 427 LS 428
            S
Sbjct: 523 SS 524


>gi|171316796|ref|ZP_02906007.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
 gi|171098054|gb|EDT42870.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
          Length = 598

 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 17/232 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           + ++  + EV    L+QIG          G  +G    F A  G    +  GD S + ++
Sbjct: 376 IEIEAHVIEVDETALRQIGVNWGARSKHVGLQTGGGAPFGASTGNTLTAVVGD-SGRYLM 434

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTH 310
            R +       L+     R  A P +  +    A   +  +   +    ++G   SV+T 
Sbjct: 435 GRINL------LQLENKARLDASPKVATLDNVEAIMDNRSRFFVRVSGHTSGQLYSVST- 487

Query: 311 DYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368
             G+ L   P V++  GR  +++   + +  I     D +P        T   +    ++
Sbjct: 488 --GISLRVLPMVMNENGRQYIKLAVNIDDGQITNRTVDNIPIVNSSSIRTQAVIGKDESL 545

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++AG   +   +   G+P LSKIP++GALFR S  +  + +     TP +++
Sbjct: 546 LIAGYRVEGRSEGTFGVPGLSKIPVVGALFRQSESSARKMDRIFLLTPRIIE 597


>gi|118579256|ref|YP_900506.1| type II and III secretion system protein [Pelobacter propionicus
           DSM 2379]
 gi|118501966|gb|ABK98448.1| type II and III secretion system protein [Pelobacter propionicus
           DSM 2379]
          Length = 767

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 38/66 (57%)

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           K + TV    G T+ + G+++ +I   +  +PLL  IP LG  F+  +  + +TE+ +  
Sbjct: 517 KLEGTVLAQDGMTVAVGGMMRTNITDYESKVPLLGDIPYLGFFFKQKQKIKTKTELVLLI 576

Query: 415 TPFLVK 420
           TP++++
Sbjct: 577 TPYILQ 582


>gi|330975856|gb|EGH75922.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 702

 Score = 37.7 bits (86), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 102/246 (41%), Gaps = 24/246 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGK-FV 239
           +K++  L+++  + + +   I ++ R+ L ++  + +   GS +G +  F A      F+
Sbjct: 310 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVNGGANMFDAGTSSTLFI 368

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTV 298
              G F+ +           LHALE   +   +  P++  +  Q A    S  ++L  T 
Sbjct: 369 QNAGKFAAE-----------LHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTATS 417

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRK 355
                   +T    G  L  TP  L   G+  +++  ++ +  I ++      PS R   
Sbjct: 418 ERVANIEPITA---GTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGN 474

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIA 413
             T   +   G++V+ G    +       +PLL  IP +G L   SR +RE  + E    
Sbjct: 475 VSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGKLLFQSR-SRELSQRERLFI 533

Query: 414 ATPFLV 419
            TP L+
Sbjct: 534 LTPRLI 539


>gi|213026060|ref|ZP_03340507.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 173

 Score = 37.7 bits (86), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 13/170 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTHDYGV 314
           F   L+ALE+++    L++P++  ++   A          K          S+TT   G 
Sbjct: 1   FMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT---GS 57

Query: 315 VLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVL 370
           +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G +++L
Sbjct: 58  LLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLL 117

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            G  +      +  IPLL  IP++G LFRN     + T++      FL+K
Sbjct: 118 GGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 162


>gi|82795284|gb|ABB91653.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tagetis]
          Length = 699

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 10/191 (5%)

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQH 293
           GG  + + G  S   + +   F   LHALE   +   +  P++  +  Q A    S  ++
Sbjct: 350 GGASLFDAGTSSTMFIQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY 409

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA--GDMPS 350
           L  T   +     +T    G  L   P  L   G+  +++  ++ +  I V+      PS
Sbjct: 410 LTATSERAAEILPITA---GTSLQVIPRSLDHDGKPQVQMIVDIEDGQIDVSTINDTQPS 466

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ET 408
            R     T   +   G++V+ G    +       IPLL  IP +G L   SR +RE  + 
Sbjct: 467 VRRGNVSTQAVIAEHGSLVVGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSR-SRELSQR 525

Query: 409 EIFIAATPFLV 419
           E     TP L+
Sbjct: 526 ERLFILTPRLI 536


>gi|330969113|gb|EGH69179.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 700

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 10/191 (5%)

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQH 293
           GG  + + G  S   + +   F   LHALE   +   +  P++  +  Q A    S  ++
Sbjct: 351 GGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY 410

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPS 350
           L  T         +T    G  L  TP  L   G+  +++  ++ +  I ++      PS
Sbjct: 411 LTATSERVANIEPITA---GTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPS 467

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ET 408
            R     T   +   G++V+ G    +       +PLL  IP +G L   SR +RE  + 
Sbjct: 468 VRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSR-SRELSQR 526

Query: 409 EIFIAATPFLV 419
           E     TP L+
Sbjct: 527 ERLFILTPRLI 537


>gi|311235499|gb|ADP88352.1| type III secretion outer membrane pore, YscC/HrcC family
           [Desulfovibrio vulgaris RCH1]
          Length = 696

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 37/73 (50%)

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P  +  K +T   + +G ++++ G   +      +G+P+L  IP+LG LF+      + 
Sbjct: 537 IPPIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKR 596

Query: 408 TEIFIAATPFLVK 420
            E  I  TP +V+
Sbjct: 597 MERLILITPKVVR 609


>gi|221235980|ref|YP_002518417.1| CpaC-like secretion pathway protein [Caulobacter crescentus NA1000]
 gi|220965153|gb|ACL96509.1| CpaC-related secretion pathway protein [Caulobacter crescentus
           NA1000]
          Length = 143

 Score = 37.4 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 34/54 (62%)

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           V+D++V DP+ ADV V + RT+ + GK  G  +++  G +G+ + +  +++  +
Sbjct: 58  VRDIVVGDPSIADVSVVNDRTLVVLGKRPGVTSLLAFGANGRPLADRQVVVSEN 111


>gi|237799995|ref|ZP_04588456.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331022850|gb|EGI02907.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 700

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 23/232 (9%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGK-FVSEGGDFSVKGVLDR 253
           + +   I ++ R+ L ++  + +   GS SG +  F A      F+   G F+ +     
Sbjct: 321 IEIDAVILDIDRNELAELSSRWNFNAGSVSGGANLFDAGTSSTLFIQNAGKFAAE----- 375

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSSSTGATSVTTHDY 312
                 LHALE   +   +  P++  +  Q A    S  ++L  T   +     +T    
Sbjct: 376 ------LHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTATSERAAEILPITA--- 426

Query: 313 GVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIV 369
           G  L   P  L   G+  +++  ++ +  I V+      PS R     T   +   G++V
Sbjct: 427 GTSLQVIPRSLDHDGKSQVQMIVDIEDGQIDVSTINDTQPSVRRGNVSTQAMIAEHGSLV 486

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419
           + G    +       +PLL  IP +G L   SR +RE  + E     TP L+
Sbjct: 487 IGGFHGLEANDRIHKVPLLGDIPYIGKLLFQSR-SRELSQRERLFILTPRLI 537


>gi|50508104|dbj|BAD30080.1| outer-membrane protein of Hrp(typeIII) secretion pathway
           [Pseudomonas syringae pv. tabaci]
          Length = 699

 Score = 37.4 bits (85), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 20/244 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+++  + + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 307 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSS 300
            G  S   + +   F   LHALE   +   +  P++  +  Q A    S  +++  T   
Sbjct: 357 AGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYITATSER 416

Query: 301 STGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKAD 357
                 +T    G  L   P  L   G+  +++  ++ +  I ++      PS R     
Sbjct: 417 VANIEPITA---GTSLQVIPRSLDHDGKPQVQLSVDIEDGQIDISDINDTQPSVRKGNVS 473

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAAT 415
           T   +   G++V+ G    +       IPLL  IP +G L   SR +RE  + E     T
Sbjct: 474 TQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILT 532

Query: 416 PFLV 419
           P L+
Sbjct: 533 PRLI 536


>gi|329891000|ref|ZP_08269343.1| pilQ [Brevundimonas diminuta ATCC 11568]
 gi|328846301|gb|EGF95865.1| pilQ [Brevundimonas diminuta ATCC 11568]
          Length = 129

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/83 (21%), Positives = 44/83 (53%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           AA++ ++   + + + + + L++   +Q+      V+V++P  ADV V   RT+++ GK+
Sbjct: 11  AALLVLTAPAVAQERPLDVKLDQATRVQLRAPAGSVIVANPRIADVTVTDARTLFITGKS 70

Query: 94  VGQANVILIGHDGKQMLNLDILI 116
            G   +I +   G+ +    + +
Sbjct: 71  YGLTEIIAVDALGRPLFQRQVAV 93


>gi|317486813|ref|ZP_07945629.1| YscC/HrcC family type III secretion outer membrane pore [Bilophila
           wadsworthia 3_1_6]
 gi|316921976|gb|EFV43246.1| YscC/HrcC family type III secretion outer membrane pore [Bilophila
           wadsworthia 3_1_6]
          Length = 614

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 81/215 (37%), Gaps = 36/215 (16%)

Query: 237 KFVSEGGDFSVKGVLDRFS-------------------------FETVLHALERATAIRT 271
           K  S GG+FS  G  D+FS                         F   + ALE     R 
Sbjct: 327 KGWSTGGEFS--GTGDKFSPLPTMGTPSGTGMNLSTIYTHGADFFLARIQALEAEGEARM 384

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           L  P++  +    A+  +   +  +       A  +   + G VL  TP ++   R    
Sbjct: 385 LGRPSVLTVDNVQATLENTSTYYIQV--EGYQAVDLFKVEAGTVLRVTPHIIRNERGQTS 442

Query: 332 IQTEVS-------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           I+  VS            V+   +P  +  K +T   + +G ++++ G   +       G
Sbjct: 443 IKLAVSVQDDQNDSKDAPVSDNSVPPIKQTKINTQAIVGAGQSLLIGGYYYEQKSTDASG 502

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           IP+L  IP+LG LF+ +    +  E  I  TP ++
Sbjct: 503 IPILMHIPVLGNLFKTTSKGTKRMERLILITPKVI 537


>gi|330984958|gb|EGH83061.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 703

 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 101/246 (41%), Gaps = 24/246 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+++  + + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 311 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNMFD 360

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSS 300
            G  S   + +   F   LH LE   +   +  P++  +  Q A    S  ++L  T   
Sbjct: 361 AGTTSTMFIQNAGKFTAELHTLEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTATSER 420

Query: 301 STGATSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKAD 357
                 +T    G  L  TP  L + G+  +++  ++ +  I ++      PS R     
Sbjct: 421 VANIEPITA---GTSLQVTPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVS 477

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR----FNREETEIFIA 413
           T   +   G++V+ G    +       +PLL  IP +G L   SR     NRE   +FI 
Sbjct: 478 TQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSNRE--RLFI- 534

Query: 414 ATPFLV 419
            TP L+
Sbjct: 535 LTPRLI 540


>gi|323186572|gb|EFZ71915.1| hypothetical protein ECOK1357_0057 [Escherichia coli 1357]
          Length = 367

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253
            + L + I ++ +  L  +G     T S       F   FG  F +S     S    LD 
Sbjct: 101 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 150

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F   + AL +      ++ P +       A F +        V     +    T  YG
Sbjct: 151 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 208

Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +++  P   S G+I + +  E        +      N   +P     K  T   +P G 
Sbjct: 209 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 268

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G   +        IP LS IP++G +F+      + + I      FL++P  +++
Sbjct: 269 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 323

Query: 427 LS 428
            S
Sbjct: 324 SS 325


>gi|290985628|ref|XP_002675527.1| predicted protein [Naegleria gruberi]
 gi|284089124|gb|EFC42783.1| predicted protein [Naegleria gruberi]
          Length = 452

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 23/155 (14%)

Query: 243 GDFSVKGVLDRFSFETVLHALE-RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G+F+V     +F    V H +E   T+I +  E  +  + GQ  +       LY  V S 
Sbjct: 112 GEFTVYNSQKQF----VSHHVESEGTSIVSGFEKIIEFLPGQYDA------DLYNLVLSY 161

Query: 302 TGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
            G + +T+ DYG V+  T +V    S GRI   +Q+E+S+ ++G  A  MP    R    
Sbjct: 162 FGDSVLTSVDYGGVVDLTSSVRSCFSDGRIQQFVQSELSD-IVGQAAESMPDSYARYHKV 220

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           +     GG          +I  +++ IP  S  P+
Sbjct: 221 SQMDIVGG--------NPEISDIRQRIPTFSANPV 247


>gi|123443735|ref|YP_001007706.1| type III secretion system protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090696|emb|CAL13572.1| possible type III secretion system protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 563

 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P       +T   +    ++++ G  +D +++ +  IPLLS IP+LG LF+    N+++
Sbjct: 452 LPEVNRTNINTVARIGRDKSLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQK 511

Query: 408 TEIFIAATPFLVKP 421
             I I    FL++P
Sbjct: 512 M-IRI----FLIQP 520


>gi|302185350|ref|ZP_07262023.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           syringae 642]
          Length = 690

 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 96/248 (38%), Gaps = 40/248 (16%)

Query: 231 AADF-GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           A +F GG  ++E G  S   V D+  F   L ALE   +   +  P++  +  Q A    
Sbjct: 331 AGNFSGGANIAENGRSSTMFVQDQDKFFAGLRALEGNGSATVIGNPSVLTLENQPAVIDF 390

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGVNAG-- 346
               + + V          T   G  L   P ++ + G     IQ      V+ +  G  
Sbjct: 391 SQTEILEAVGERVANFQPLTA--GTSLQVIPRSITASGAKNQMIQL-----VVDIEDGQI 443

Query: 347 -------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                  + PS R     T   +    ++V+ G    +  +  + +P LS IPILG L  
Sbjct: 444 EESNIRAEQPSVRRGNVSTQAVIAEKASLVVGGFHVYENNERTKKVPYLSAIPILGKLLF 503

Query: 400 NSR----FNREETEIFIAATPFL----VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
            +R     NRE   +FI  TP L    V P+   D   P+    V+D        R+NKI
Sbjct: 504 TARERGQSNRE--RLFI-LTPRLVGDQVNPMRYIDYGNPN---HVQD--------RLNKI 549

Query: 452 YGPKEASE 459
              +E +E
Sbjct: 550 KERREGAE 557


>gi|256259410|gb|ACU65047.1| HrcC [Pseudomonas syringae pv. syringae]
          Length = 701

 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 96/248 (38%), Gaps = 40/248 (16%)

Query: 231 AADF-GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           A +F GG  ++E G  S   V D+  F   L ALE   +   +  P++  +  Q A    
Sbjct: 342 AGNFSGGANIAENGRSSTMFVQDQDKFFAGLRALEGNGSATVIGNPSVLTLENQPAVIDF 401

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGVNAG-- 346
               + + V          T   G  L   P ++ + G     IQ      V+ +  G  
Sbjct: 402 SQTEILEAVGERVANFQPLTA--GTSLQVIPRSITASGAKNQMIQL-----VVDIEDGQI 454

Query: 347 -------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                  + PS R     T   +    ++V+ G    +  +  + +P LS IPILG L  
Sbjct: 455 EESNIRAEQPSVRRGNVSTQAVIAEKASLVVGGFHVYENNERTKKVPYLSAIPILGKLLF 514

Query: 400 NSR----FNREETEIFIAATPFL----VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
            +R     NRE   +FI  TP L    V P+   D   P+    V+D        R+NKI
Sbjct: 515 TARERGQSNRE--RLFI-LTPRLVGDQVNPMRYIDYGNPN---HVQD--------RLNKI 560

Query: 452 YGPKEASE 459
              +E +E
Sbjct: 561 KERREGAE 568


>gi|86130937|ref|ZP_01049536.1| general secretion pathway protein D [Dokdonia donghaensis MED134]
 gi|85818348|gb|EAQ39508.1| general secretion pathway protein D [Dokdonia donghaensis MED134]
          Length = 728

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 14/156 (8%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------TGAT 305
           +F   + A E        + P +T ++G  A F++G    Y+   +          + + 
Sbjct: 553 NFFATIRASETNGNFNIKSSPRITTLNGHRAYFSNGRTSYYEITQNQFVGVQNPVVSESV 612

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
                D  + L   P V   G + + I   Q+  S   +  N    P    R+  + ++ 
Sbjct: 613 DYVPIDAELSLEVLPFVSEDGEVTMDIKVIQSSFSGERVTENGP--PEISSREFTSIIKS 670

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            +   +VL GL +D       G+P L++IPI+  LF
Sbjct: 671 RTNDIVVLGGLEEDSKNNSGSGVPFLARIPIIKWLF 706


>gi|218887514|ref|YP_002436835.1| type III secretion outer membrane pore, YscC/HrcC family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758468|gb|ACL09367.1| type III secretion outer membrane pore, YscC/HrcC family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 666

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 24/246 (9%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEGG 243
           V +   I ++  D  + +G  +  T + SG   +   DF             GK +  G 
Sbjct: 319 VEIHAAIVDIDSDYKRDLGVTYQGT-AGSGQRWAGGGDFSTGTDAFPTLPSPGKPLGNGL 377

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             S    +    F   + ALE+    R L  P++  +    A+  +     Y        
Sbjct: 378 TLSTIYTMGSDYFLAQVTALEKNGEARMLGRPSVLTVDNVQATLEN--TSTYYIEVQGYQ 435

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRI---------QTEVSEPVIGVNAGDMPSYRVR 354
           A  +   + G VL  TP ++     G  I         Q + S      N+  +P  +  
Sbjct: 436 AVDLFKVEAGTVLRVTPHIIRNEDGGQSIKLVVSVQDDQNDNSSATSTSNSTAIPPVKQT 495

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           K +T   +  G ++++ G   +       GIP+L  IP+LG LF+ +    +  E  I  
Sbjct: 496 KINTQAIVGGGQSLLIGGYYYEQKSTTDTGIPILMDIPVLGHLFKTNSKTSKRMERLILI 555

Query: 415 TPFLVK 420
           TP +V+
Sbjct: 556 TPKVVR 561


>gi|224373205|ref|YP_002607577.1| hypothetical protein NAMH_1181 [Nautilia profundicola AmH]
 gi|223589165|gb|ACM92901.1| hypothetical protein NAMH_1181 [Nautilia profundicola AmH]
          Length = 396

 Score = 37.0 bits (84), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 15/175 (8%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSV 307
           +F   +  L    A  T+++PT+  I   + +  S     Y T S +T         T +
Sbjct: 212 NFSAFIKFLNSKGAAETISKPTILLIDSSNYTLESVHSIPYVTKSVTTDKDGNPVTQTDL 271

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              D G+ ++     ++   I   +   V E ++  +  D P    +  +T V+L    +
Sbjct: 272 KYKDVGLKIYIKNVYITDRSIDFDMDIYV-ESIVSYD-NDKPITDTKHFNTHVQLTKKSS 329

Query: 368 -IVLAGLLKDDIQQLKE--GIPLLSKIPILGALFRNSRFNREETEI-FIAATPFL 418
             ++AGL    + ++ E  G+P+L  IPILG LF+ ++ + E+    F  +T F 
Sbjct: 330 GYLIAGLRT--VTKISEDSGVPVLKDIPILGILFQKNKKSVEDLSFSFYISTNFF 382


>gi|294507285|ref|YP_003571343.1| general secretion pathway protein D [Precursor] [Salinibacter ruber
           M8]
 gi|294343613|emb|CBH24391.1| Probable general secretion pathway protein D [Precursor]
           [Salinibacter ruber M8]
          Length = 473

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 74/187 (39%), Gaps = 23/187 (12%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L+ +E+    RT+A P +T  SG+       GQ +    +   G T       G++
Sbjct: 241 FRRFLNLVEQDNVGRTVANPQVTVQSGEQGEIQI-GQDVPIQTTDFAGNTVTEFFSTGII 299

Query: 316 LHFTPTVLSPG-------------RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           +  TPT+LS                + + ++   S+P     +G  P     +A T + L
Sbjct: 300 IDVTPTLLSQPVADTSGAPVLDFIHLNVDVEDSNSQP-----SGSGPIINRNQASTQILL 354

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIP--ILGA--LFRNSRFNREETEIFIAATPFL 418
                  + GL+       + G+P+L  +P  + G   +F +   N  + E+ I     +
Sbjct: 355 LDNEATAIGGLISTQKTTRRSGVPILKDLPGWVFGLRYIFGSETTNVTKQELLIVLRAEI 414

Query: 419 VKPVAMR 425
           V P+  R
Sbjct: 415 VDPLRAR 421


>gi|41019214|gb|AAR98526.1| HrcC [Pseudomonas syringae pv. phaseolicola]
          Length = 699

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 20/244 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+++  + + +   I ++ R+ L ++  + +   SS G         GG  + +
Sbjct: 307 EKLIKELDVS-RNLIEIDAVILDIDRNELAELFNRWNFNASSVG---------GGVNLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSS 300
            G  S   + +   F + LHALE   +   +  P++  +  Q A    S  +++  T   
Sbjct: 357 AGTSSTMFIQNAGKFXSELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYITATSER 416

Query: 301 STGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKAD 357
                 +T    G  L   P  L   G+  +++  ++ +  I ++      PS R     
Sbjct: 417 VANIEPITA---GTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVS 473

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAAT 415
           T   +   G++V+ G    +       IPLL  IP +G L   SR +RE  + E     T
Sbjct: 474 TQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSR-SRELGQRERLFILT 532

Query: 416 PFLV 419
           P L+
Sbjct: 533 PRLI 536


>gi|313681304|ref|YP_004059042.1| type ii and iii secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154164|gb|ADR32842.1| type II and III secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
          Length = 481

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 23/230 (10%)

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFETVLHALERAT 267
           +G   S+  S +    SF A   G   S G       F +    D ++ + +++ALE   
Sbjct: 253 LGIDWSLVPSLAKDGLSFVASATGSLGSAGASAVPLTFGMIMKNDTYNGKALVNALENFG 312

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDY----GVVLHFT 319
            + ++  P L  ++G +   T G +  Y    +  S   G   V+T       G+ ++  
Sbjct: 313 KVESVQRPKLLGLAGTNVKLTDGVEAPYISGIQNTSVGNGTAQVSTTSATALSGLEINLK 372

Query: 320 PTVLSP---GRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLL 374
             +L       IGL+I   V      VN      P    +  + T+ +  G  IV++GL 
Sbjct: 373 SNMLDGTVITDIGLKINDIVGYTSFEVNGNKFSQPQTVTKAINNTMRVQPGVPIVISGLF 432

Query: 375 KDDIQQLKEGIPLL--SKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           ++   +   G+P L  S   ++G     S     ++E+ I  TP ++K V
Sbjct: 433 RNKSDKGWNGLPGLGDSAAGVVGGARHTS---NTKSEMVIVVTPRVIKYV 479


>gi|269138220|ref|YP_003294920.1| Type II secretory pathway, component PulD like protein
           [Edwardsiella tarda EIB202]
 gi|55981981|gb|AAV69411.1| EsaC [Edwardsiella tarda]
 gi|61743031|gb|AAX55251.1| EsaC [Edwardsiella tarda]
 gi|267983880|gb|ACY83709.1| Type II secretory pathway, component PulD like protein
           [Edwardsiella tarda EIB202]
 gi|304558263|gb|ADM40927.1| EsaC [Edwardsiella tarda FL6-60]
          Length = 494

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 23/216 (10%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------ADFGGKFVSEGGDFSVKG 249
           + + VTI +V    + ++G   S +    G   SF       AD     ++  G F V+ 
Sbjct: 272 IEISVTIIDVDAGDINELGIDWSASARIGGGQVSFNNSGGLNADSFSSLIANSGSFMVR- 330

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                     L ALE+ +  + ++ P++  +    A          K  S         T
Sbjct: 331 ----------LSALEQQSKAKIVSRPSVVTLDNVQAVLDRSITFYTKLRSEKNPKLEAIT 380

Query: 310 HDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSG 365
              G ++  TP ++      +I L +  E       ++ A  +P  +  +  T   L  G
Sbjct: 381 A--GALMRVTPRLIRERGGNKILLILNIEDGRQGAPLSQAESLPQVQNAEIATQATLNLG 438

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             ++L G ++++  Q    IPLL  IP++G LFR++
Sbjct: 439 QALLLGGFVQNENTQGVRKIPLLGDIPLIGGLFRST 474


>gi|8996028|gb|AAF82327.1|AF005744_3 YsaC [Yersinia enterocolitica]
          Length = 525

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P       +T   +    ++++ G  +D +++ +  IPLLS IP+LG LF+    N+++
Sbjct: 453 LPEVNRTNINTVARIGRDKSLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQK 512

Query: 408 TEIFIAATPFLVKP 421
             I I    FL++P
Sbjct: 513 M-IRI----FLIQP 521


>gi|15088592|gb|AAK84103.1|AF369954_1 YsaC [Yersinia enterocolitica]
          Length = 526

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P       +T   +    ++++ G  +D +++ +  IPLLS IP+LG LF+    N+++
Sbjct: 454 LPEVNRTNINTVARIGRDKSLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQK 513

Query: 408 TEIFIAATPFLVKP 421
             I I    FL++P
Sbjct: 514 M-IRI----FLIQP 522


>gi|87120224|ref|ZP_01076119.1| general secretion pathway protein (PilQ) [Marinomonas sp. MED121]
 gi|86164327|gb|EAQ65597.1| general secretion pathway protein (PilQ) [Marinomonas sp. MED121]
          Length = 57

 Score = 37.0 bits (84), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 25/36 (69%)

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           G T+ L GL+ ++ +Q + G+P+L  +P +G LFR+
Sbjct: 3   GETMALGGLVSEETRQSESGVPMLKDLPFIGRLFRS 38


>gi|7416786|dbj|BAA94035.1| chlorophillide reductase subunit [Rubrivivax gelatinosus]
 gi|29893483|gb|AAO93116.1| chlorophyllide reductase X subunit [Rubrivivax gelatinosus]
          Length = 334

 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 310 HDYG---VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-YRVRKADTTVEL--P 363
           HD+G   V+L F   V+  G  GL I  ++ + VI V + D+ S Y        VE    
Sbjct: 149 HDWGFDYVLLDFLGDVVC-GGFGLPIARDMCQKVIVVGSNDLQSLYVANNVCNAVEYFRK 207

Query: 364 SGGTIVLAGLL--KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            GG + +AG++  KDD     +     + IP+L A+  N    R+     I A P
Sbjct: 208 LGGNVGVAGMVINKDDGTGEAQAFAAHAGIPVLAAIPANEEIRRKSAAYDIVARP 262


>gi|71737444|ref|YP_273539.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557997|gb|AAZ37208.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|170523102|gb|ACB20761.1| type III outer-membrane secretion protein HrcC [Pseudomonas
           syringae pv. glycinea]
 gi|320322961|gb|EFW79051.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329916|gb|EFW85904.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330874593|gb|EGH08742.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 699

 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 100/244 (40%), Gaps = 20/244 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+++  + + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 307 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSS 300
            G  S   + +   F + LHALE   +   +  P++  +  Q A    S  +++  T   
Sbjct: 357 AGTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYITATSER 416

Query: 301 STGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKAD 357
                 +T    G  L   P  L   G+  +++  ++ +  I ++      PS R     
Sbjct: 417 VANIEPITA---GTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVS 473

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAAT 415
           T   +   G++V+ G    +       IPLL  IP +G L   SR +RE  + E     T
Sbjct: 474 TQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILT 532

Query: 416 PFLV 419
           P L+
Sbjct: 533 PRLI 536


>gi|42562008|gb|AAS20450.1| HrcC [Pseudomonas syringae pv. phaseolicola]
          Length = 699

 Score = 37.0 bits (84), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 100/244 (40%), Gaps = 20/244 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+++  + + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 307 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSS 300
            G  S   + +   F + LHALE   +   +  P++  +  Q A    S  +++  T   
Sbjct: 357 AGTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYITATSER 416

Query: 301 STGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKAD 357
                 +T    G  L   P  L   G+  +++  ++ +  I ++      PS R     
Sbjct: 417 VANIEPITA---GTSLQVIPRSLDHDGKPQVQLIVDIEDGKIDISDINDTQPSVRKGNVS 473

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAAT 415
           T   +   G++V+ G    +       IPLL  IP +G L   SR +RE  + E     T
Sbjct: 474 TQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILT 532

Query: 416 PFLV 419
           P L+
Sbjct: 533 PRLI 536


>gi|160902548|ref|YP_001568129.1| hypothetical protein Pmob_1087 [Petrotoga mobilis SJ95]
 gi|160360192|gb|ABX31806.1| hypothetical protein Pmob_1087 [Petrotoga mobilis SJ95]
          Length = 694

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           R  ++   +P+GG I L GL    I + + GIP+  +IP++G LF
Sbjct: 620 RNMNSKFIIPNGGFIKLGGLNFTSIVENETGIPIFKEIPVIGQLF 664


>gi|297821329|ref|XP_002878547.1| hypothetical protein ARALYDRAFT_481003 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297324386|gb|EFH54806.1| hypothetical protein ARALYDRAFT_481003 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1061

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 12/105 (11%)

Query: 112 LDILIER------DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           +D+L+E+      +IA    TL+R + D +I  +  +  + +  + R IQ+ QR +   E
Sbjct: 592 MDLLVEQVKMLAGEIAFSTSTLKRLV-DQSIN-DPENSKIQIQNLEREIQEKQRQMRSLE 649

Query: 166 TFLSQSGRNQYANSSS----KKVMNLLNIAGEDQVTLKVTIAEVR 206
             +++SG    AN+SS    +KVM L+    E    L++  A+ R
Sbjct: 650 QRITESGEASIANASSIEMQQKVMRLMTQCNEKSFELEIISADNR 694


>gi|227823967|ref|YP_002827940.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234]
 gi|227342969|gb|ACP27187.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234]
          Length = 141

 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +L++   V  V++ +   AD  V   +T+ L G+N G  N++++  DG  +++  IL+  
Sbjct: 45  VLKLDRPVSKVIIGNSDVADATVADSKTIVLTGRNFGTTNLVILDQDGNAIVDERILVSI 104

Query: 119 D 119
           D
Sbjct: 105 D 105


>gi|297538460|ref|YP_003674229.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
 gi|297257807|gb|ADI29652.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
          Length = 589

 Score = 36.6 bits (83), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 97/278 (34%), Gaps = 52/278 (18%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV----- 239
           + L+ +  E QV L+  I  V+ +   Q G   S+ G S G +     +   K       
Sbjct: 267 LRLMQVTIERQVILEAKIMNVQLNDQSQSGVNWSVFGKS-GSNTGIVGNLNAKTTLGRAG 325

Query: 240 ---SEGGDFSVKG-------------------VLDRFSFETVLHALERATAIRTLAEPTL 277
                 GD S                       L   +F  +L  LE    ++ L+ P +
Sbjct: 326 NGDVTSGDLSASSGNVIANTATTALGGPLFAVALQGANFAALLSFLETQGDVQVLSSPRI 385

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDY--GVVLHFTPTVLSPG 326
             I+ Q A    G    + T  SS              VT   +  G+ L  TP +    
Sbjct: 386 ATINNQKAVLKVGTDEFFVTGISSNTTASTGATTTSPEVTLQPFFSGIALDVTPQIDKDD 445

Query: 327 RIGLRIQTEVSEPVIGVN--------AGD----MPSYRVRKADTTVELPSGGTIVLAGLL 374
            I L +   +S+ V  VN        +G+    + S  V + D+ V    G  I + GL+
Sbjct: 446 NIILHMHPSISQ-VTTVNKQLNLGGVSGNINLPLASSNVSETDSIVRTHDGRVIAIGGLM 504

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +     K  +P L  I  +G  FR       +TE+ I
Sbjct: 505 TESSISNKSKVPGLGDIKGVGNAFRQKGSTSSKTELVI 542


>gi|209551755|ref|YP_002283672.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537511|gb|ACI57446.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 136

 Score = 36.6 bits (83), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +L++   V  V+V +   AD  V   +T+ L G++ G  N++L+  DG  +L+  IL+  
Sbjct: 40  VLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSI 99

Query: 119 D 119
           D
Sbjct: 100 D 100


>gi|218671456|ref|ZP_03521126.1| pilus subunit transmembrane protein [Rhizobium etli GR56]
          Length = 135

 Score = 36.6 bits (83), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +L++   V  V+V +   AD  V   +T+ L G++ G  N++L+  DG  +L+  IL+  
Sbjct: 40  VLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSI 99

Query: 119 D 119
           D
Sbjct: 100 D 100


>gi|114798749|ref|YP_761695.1| hypothetical protein HNE_3018 [Hyphomonas neptunium ATCC 15444]
 gi|114738923|gb|ABI77048.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 147

 Score = 36.6 bits (83), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/83 (21%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            +++S+  +K + L++      ++V +   ADV VH  R +++ GK+ G  N+++    G
Sbjct: 23  AQQLSVEASKTVPLRLTGPAASIVVGNKNIADVAVHDDRLIFVTGKSYGTTNLMVFNKAG 82

Query: 107 KQMLNLDILIERDIAHLEMTLRR 129
           +++ + ++++  + + L +T+ R
Sbjct: 83  EEVYSAEVVVTANSSSL-VTVNR 104


>gi|190889877|ref|YP_001976419.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652]
 gi|190695156|gb|ACE89241.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652]
          Length = 136

 Score = 36.6 bits (83), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +L++   V  V+V +   AD  V   +T+ L G++ G  N++L+  DG  +L+  IL+  
Sbjct: 40  VLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSI 99

Query: 119 D 119
           D
Sbjct: 100 D 100


>gi|330862439|emb|CBX72597.1| hypothetical protein YEW_HP33920 [Yersinia enterocolitica W22703]
          Length = 149

 Score = 36.6 bits (83), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +P  +     T   L  G +++L G ++D   + +  IPLL  IP+LG LFR++
Sbjct: 74  LPEIQNSDISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRST 127


>gi|327194698|gb|EGE61544.1| pilus subunit transmembrane protein [Rhizobium etli CNPAF512]
          Length = 136

 Score = 36.6 bits (83), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +L++   V  V+V +   AD  V   +T+ L G++ G  N++L+  DG  +L+  IL+  
Sbjct: 40  VLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSI 99

Query: 119 D 119
           D
Sbjct: 100 D 100


>gi|167571699|ref|ZP_02364573.1| Type II secretory pathway, component PulD [Burkholderia
           oklahomensis C6786]
          Length = 439

 Score = 36.6 bits (83), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 7/138 (5%)

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHD 311
           +  + AL   +  + ++ P +  +SG+      G Q   ++  S  G+      S+T  D
Sbjct: 278 DAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQD 337

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVL 370
            G++    P V+    I +++  E+S+ V      D  P+   R+  T   +  G  IVL
Sbjct: 338 AGLIFDVEPIVMR-EVIEVKVHEEISDFVATKTGVDTSPTKNTRQLQTVTRMKDGEVIVL 396

Query: 371 AGLLKDDIQQLKEGIPLL 388
            GL++D     + G   L
Sbjct: 397 GGLIQDRNATARSGYAWL 414


>gi|167947039|ref|ZP_02534113.1| Type II secretory pathway component PulD-like protein [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 290

 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 16/156 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDR 253
           QV ++VTIAEV      Q G   S+ GS  G +   +A  G   +       ++ G ++ 
Sbjct: 96  QVLIEVTIAEVVLSDHFQAGVDWSLIGSDIGIN---SAMIGQNLLQAPLASLTLSGNING 152

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------------KTVSSS 301
                 L ALE    ++ L+ P +  ++ Q A      Q +Y                + 
Sbjct: 153 DPLNLTLKALENFGKVKVLSSPKIMTLNNQPAVLRVTDQRVYMITDVEVEEDQETKTKTR 212

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           T  T+V T   G+VL  TP V     + L I+  +S
Sbjct: 213 TFETTVNTVPEGLVLTVTPYVDQFDTVMLNIRPTIS 248


>gi|51593443|gb|AAH80733.1| Golga1 protein [Mus musculus]
          Length = 733

 Score = 36.6 bits (83), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 17/150 (11%)

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           + II Q  +D+Q V      K  V+ H    +    K + Q    L G D  Q    ++L
Sbjct: 244 QAIIQQHSIDLQKVTAETQEKEKVITHLQEKVIFLEKRLEQN---LSGEDHVQ----ELL 296

Query: 116 IERDIA--HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
            E+ +A  +LE T ++ +A  N      S T  L+ +   ++D +R+++ +E  LSQS R
Sbjct: 297 KEKTVAEQNLEDTRQQLLAARN------SHTKALYLLETRVKDLERSLQAAEEQLSQS-R 349

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           N  A+  + ++  L+    E+ ++ +  +A
Sbjct: 350 NVVADQEA-QIQKLITTNQENSLSQQQVLA 378


>gi|217077653|ref|YP_002335371.1| general secretion pathway protein D, putative [Thermosipho
           africanus TCF52B]
 gi|217037508|gb|ACJ76030.1| general secretion pathway protein D, putative [Thermosipho
           africanus TCF52B]
          Length = 368

 Score = 36.6 bits (83), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN--REETEIFIAA 414
           +AGL  D + +   GIP L  IPI+G LF+NS +   ++   IFI A
Sbjct: 315 IAGLSFDSVTKQDGGIPGLKDIPIIGNLFKNSTYTSRKKNIVIFIKA 361


>gi|148694893|gb|EDL26840.1| golgi autoantigen, golgin subfamily a, 1, isoform CRA_d [Mus
           musculus]
          Length = 743

 Score = 36.6 bits (83), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 17/150 (11%)

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           + II Q  +D+Q V      K  V+ H    +    K + Q    L G D  Q    ++L
Sbjct: 254 QAIIQQHSIDLQKVTAETQEKEKVITHLQEKVIFLEKRLEQN---LSGEDHVQ----ELL 306

Query: 116 IERDIA--HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
            E+ +A  +LE T ++ +A  N      S T  L+ +   ++D +R+++ +E  LSQS R
Sbjct: 307 KEKTVAEQNLEDTRQQLLAARN------SHTKALYLLETRVKDLERSLQAAEEQLSQS-R 359

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           N  A+  + ++  L+    E+ ++ +  +A
Sbjct: 360 NVVADQEA-QIQKLITTNQENSLSQQQVLA 388


Searching..................................................done


Results from round 2




>gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040404|gb|ACT57200.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 474

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 474/474 (100%), Positives = 474/474 (100%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL
Sbjct: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI
Sbjct: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS
Sbjct: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS
Sbjct: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS
Sbjct: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV
Sbjct: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK
Sbjct: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK
Sbjct: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474


>gi|315121891|ref|YP_004062380.1| putative pilus assembly protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495293|gb|ADR51892.1| putative pilus assembly protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 471

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 330/474 (69%), Positives = 389/474 (82%), Gaps = 3/474 (0%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M+  Q+T F +  IF+ SSN  +A+   +   NA+ I+I D  IG  KKI+IGL KV+IL
Sbjct: 1   MKNFQKTLFMLFVIFISSSNFLLAQSKLVDAKNASTIHIGDSAIGTSKKINIGLGKVVIL 60

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P  VQDVLVSDPTKADVVVHS +T+Y+FGK+VGQANVILIGHD KQ+LN+DI IERDI
Sbjct: 61  HLPSRVQDVLVSDPTKADVVVHSSKTVYIFGKSVGQANVILIGHDEKQLLNIDIFIERDI 120

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
            +LEMT RRF++ SNI VEM+SD +VLHG VRTIQDSQ AVELS  FLS    N Y  +S
Sbjct: 121 RNLEMTFRRFLSGSNIHVEMLSDNLVLHGEVRTIQDSQHAVELSNMFLSNERNNLYKTAS 180

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
             KV+NLLNI  EDQVTLKVTIAEVRRD+LKQIGFQH+I  SS GPSK    DF G    
Sbjct: 181 GSKVINLLNIGAEDQVTLKVTIAEVRRDVLKQIGFQHTI--SSGGPSKGKRIDFDGSLGG 238

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           +G DF++  +LDRF+F++VL+ALERATAIRTLAEPTLTAISGQ+A+F SGG  LY++V  
Sbjct: 239 QGADFAMTTILDRFTFKSVLNALERATAIRTLAEPTLTAISGQNATFRSGGTRLYRSV-G 297

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           + G +++T HDYGVVL FTPTVLSPGRIGLRI+TEVSEPV+GV+    P YR+RKADTTV
Sbjct: 298 ANGTSTITPHDYGVVLTFTPTVLSPGRIGLRIETEVSEPVLGVSTTGEPEYRMRKADTTV 357

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ELPSGGTIVLAGLLKDDIQQ + G+PLLSKIPILGALFR++ F+REETEIFI+ATPFLVK
Sbjct: 358 ELPSGGTIVLAGLLKDDIQQKRGGVPLLSKIPILGALFRSNSFSREETEIFISATPFLVK 417

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           PVAM +LSRPDD+Y +E+DAKAF FNRVNKIYGPKEA++  GQNYKGAIGFIYK
Sbjct: 418 PVAMNELSRPDDNYDIENDAKAFLFNRVNKIYGPKEAAQGNGQNYKGAIGFIYK 471


>gi|15963894|ref|NP_384247.1| putative pilus assembly transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|307315791|ref|ZP_07595305.1| type II and III secretion system protein [Sinorhizobium meliloti
           BL225C]
 gi|307320426|ref|ZP_07599843.1| type II and III secretion system protein [Sinorhizobium meliloti
           AK83]
 gi|15073069|emb|CAC41528.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|306893992|gb|EFN24761.1| type II and III secretion system protein [Sinorhizobium meliloti
           AK83]
 gi|306898559|gb|EFN29232.1| type II and III secretion system protein [Sinorhizobium meliloti
           BL225C]
          Length = 511

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 214/508 (42%), Positives = 314/508 (61%), Gaps = 37/508 (7%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           +  + +    +S  L  S  ++  LP  + A+++V+ I D   G  K I++GLNK +++ 
Sbjct: 6   KKFRASLAAGLSFCLTFSGMALPTLPAAEAASSSVVRIVDSGPGARKTINLGLNKAVVVD 65

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +P D  D+LV+DP+ AD +  + R +YLFGK+VGQ N+ + G  G+++++L++ +ERD+A
Sbjct: 66  LPSDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVA 125

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN------- 174
            LE  LRRFI D++I VE++SD VVL G VRT  DS RAV+L+  FL             
Sbjct: 126 GLEANLRRFIPDADINVEIISDNVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQ 185

Query: 175 --------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
                      +  + +++NLL I G+DQVTLKVT+AEV R +LKQ+GF   ++   SG 
Sbjct: 186 GNNGDADIFAEDRQNSQIVNLLTIEGDDQVTLKVTVAEVSRQVLKQLGFNGRVSDGESGI 245

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           S    A+  G  ++ G +  +KG +   +  + ++A+E+A  +RTLAEP+LTAISGQ A 
Sbjct: 246 SFRNPANL-GDAIAVGTNALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAISGQEAK 304

Query: 287 FTSGGQHLY-----KTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           F  GG+         +    TG T+V       +YG+ L+F P VL PGRI L+I+T+VS
Sbjct: 305 FYVGGEFRLAGVQEVSTDDETGQTTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVS 364

Query: 338 EP------VIGVNAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           EP      V G +   +P       R R+A T+VELPSGG+IV+AGL++D+I+Q   G+P
Sbjct: 365 EPTYEGSVVTGNSMTAIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLP 424

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
             SKIPILG LFR+  F R ETE+ I ATP+LV+PVA   +SRPDD+++  +D ++FF  
Sbjct: 425 GASKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISRPDDNFNPANDLESFFLG 484

Query: 447 RVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           RVN+IYG  EA    G+ Y G +GFIYK
Sbjct: 485 RVNRIYGRPEAQPPAGR-YHGNVGFIYK 511


>gi|150398541|ref|YP_001329008.1| type II and III secretion system protein [Sinorhizobium medicae
           WSM419]
 gi|150030056|gb|ABR62173.1| type II and III secretion system protein [Sinorhizobium medicae
           WSM419]
          Length = 524

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 212/506 (41%), Positives = 312/506 (61%), Gaps = 37/506 (7%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
            + +     S +L  S  ++    P + A+++V+ I +   G  K I++GLNK +++ +P
Sbjct: 21  FRASLAAGFSFWLIFSGMALPTAAPAEAASSSVVRIVNSGPGARKTINLGLNKAVVVDLP 80

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            D  D+LV+DP+ AD +  + R +YLFGK+VGQ N+ + G  G+++++L++ +ERD+A L
Sbjct: 81  SDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVAGL 140

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN--------- 174
           E  LRRFI D++I+VE++SD VVL G VRT  DS RAV+L+  FL               
Sbjct: 141 ESNLRRFIPDADIKVEIISDNVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQGN 200

Query: 175 ------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
                    +  S +++NLL I G+DQVTLKVT+AEV R +LKQ+GF   ++   SG S 
Sbjct: 201 NGDADIFAEDRQSSQIVNLLTIEGDDQVTLKVTVAEVSRQVLKQLGFNGRVSDGESGISF 260

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
              A+  G  +  G +  +KG +   +  + ++A+E+A  +RTLAEP+LTAISGQ A F 
Sbjct: 261 RNPANL-GDMIGIGTNALIKGSIGGTTISSYINAMEQAGVMRTLAEPSLTAISGQEAKFY 319

Query: 289 SGGQHLY-----KTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            GG+         +    +G T+V       +YG+ L+F P VL PGRI L+I+T+VSEP
Sbjct: 320 VGGEFRLAGVQEVSTDDDSGETTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVSEP 379

Query: 340 ------VIGVNAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
                 V G    ++P       R R+A T+VELPSGG+IV+AGL++D+I+Q   G+P  
Sbjct: 380 TYEGSVVTGNGTVNIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLPAA 439

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
           SKIPILG LFR+  F R ETE+ I ATP+LV+PVA   +SRPDD+++  +D ++FF  RV
Sbjct: 440 SKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISRPDDNFNPANDLESFFLGRV 499

Query: 449 NKIYGPKEASEVEGQNYKGAIGFIYK 474
           N+IYG  EA    G+ Y G +GFIYK
Sbjct: 500 NRIYGRAEAQPPAGR-YHGNVGFIYK 524


>gi|325291659|ref|YP_004277523.1| component of type IV pilus [Agrobacterium sp. H13-3]
 gi|325059512|gb|ADY63203.1| component of type IV pilus [Agrobacterium sp. H13-3]
          Length = 527

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 215/518 (41%), Positives = 318/518 (61%), Gaps = 47/518 (9%)

Query: 2   RYLQRTFFTMMSIFLFSSN------PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLN 55
           ++L  +    ++  L  S       P+  ++   +  +A+++ I++   G  K++ +GLN
Sbjct: 12  QHLHSSMAGSLAFCLAFSGIPGQHSPAFLRISEAEAQSASIVRITESGSGIRKRLKLGLN 71

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           K +++ +P D  D+LV+DP+ AD V  + + +YLFGK VGQ N+ + G  G+++++LD+ 
Sbjct: 72  KALVIDLPEDAHDILVADPSLADAVTRTSKRIYLFGKTVGQTNIFIFGDGGREIVSLDLE 131

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN- 174
           +ERDI+ LE  +RRFI +S+I+VE+VSD +VL G VRT QDS RAV+L+E FL       
Sbjct: 132 VERDISGLEANIRRFIPESDIKVEIVSDNIVLTGSVRTPQDSARAVQLAEAFLKGGEATT 191

Query: 175 ----------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                              N  + +++N+L I GEDQVTLKVT+AEV R +LKQ+GF  S
Sbjct: 192 RNISLTGGNNGGDAAIFAENRQTSQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGS 251

Query: 219 ITGSSSGPSKSFA--ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
           I+ S+S     F+  ++ G          S        +F + L+A+E+A  +RTLAEP+
Sbjct: 252 ISSSTSNNGFEFSNPSNLGNAISGASRIASGAIGSGSLNFASYLNAMEQAGVVRTLAEPS 311

Query: 277 LTAISGQSASFTSGGQHLYK-----TVSSSTGATSVT----THDYGVVLHFTPTVLSPGR 327
           LTAISG+ A F  GG          T+   TG  ++T    T DYG+ L+F P VLSPGR
Sbjct: 312 LTAISGEQAKFYVGGDFRLPAEQEVTIDKDTGQPTITRTTNTVDYGITLNFRPVVLSPGR 371

Query: 328 IGLRIQTEVSEP------VIGVNAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKD 376
           I L+I+T VSEP      V G     +P     S R R+  TTVELPSGG+IV+AGL++D
Sbjct: 372 ISLKIETNVSEPTYEGNVVTGNAGRTIPGSTYMSIRKRETSTTVELPSGGSIVIAGLVQD 431

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           +I+Q   G+P +SK+PI G LFR+  F R ETE+ I ATP+LV+PVA   ++RPDD+++ 
Sbjct: 432 NIRQAMSGLPGISKVPIFGTLFRSKDFIRNETELVIIATPYLVRPVARNQIARPDDNFNP 491

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           E+DA  +F NRVNK+YG K+  +V+   Y+G++GFIYK
Sbjct: 492 ENDAAMYFMNRVNKVYGRKD--QVQAAPYQGSVGFIYK 527


>gi|227823971|ref|YP_002827944.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium
           fredii NGR234]
 gi|227342973|gb|ACP27191.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium
           fredii NGR234]
          Length = 515

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 212/517 (41%), Positives = 312/517 (60%), Gaps = 45/517 (8%)

Query: 1   MRYLQRTFFTMMSIFL----FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56
           M+    TF T ++  L      S   +  +P  + A ++V+ I +   G  +K+++GLNK
Sbjct: 1   MKRSGNTFRTCLAAGLSFSLTFSGLMLPAVPTAQAAASSVVRIVESGPGVKRKVNLGLNK 60

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
            +++ +P D  D+LV+DP  AD V  + R +YLFGK VGQ N+ + G +G+++++L++ +
Sbjct: 61  AVVVDLPTDAHDILVADPVLADAVTRTSRRIYLFGKTVGQTNIFVFGPNGEEIVSLEVAV 120

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-- 174
           ERD+A LE  LRRFI +++I VE++SD VVL G VRT  DS +AV+L+  FL        
Sbjct: 121 ERDVAGLEANLRRFIPEADINVEIISDNVVLTGTVRTPLDSTKAVDLARAFLQGGEATTR 180

Query: 175 -------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
                              + +++NLL + GEDQVTLKVT+AEV R +LKQ+GF   I+ 
Sbjct: 181 NITAQGTNGDADIFAEERQTSQIVNLLTVEGEDQVTLKVTVAEVSRQVLKQLGFNGRISD 240

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             SG S    A+  G  +  G +  +KG +   +  + ++A+E+A  +RTLAEP+LTAIS
Sbjct: 241 GESGLSFRNPANL-GDAIGVGANALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAIS 299

Query: 282 GQSASFTSGGQHL---YKTVSSSTGATS----------VTTHDYGVVLHFTPTVLSPGRI 328
           GQ A F  GG+      + +++     +          V   +YG+ L+F P VL  GRI
Sbjct: 300 GQEAKFYVGGEFRLAGVQEITTEEDEATGESVPVVEREVEDAEYGIRLNFKPVVLGAGRI 359

Query: 329 GLRIQTEVSEP------VIGVNAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKDD 377
            L I+TEVSEP      V G +  D+P       R R+A T+VELPSGG+IV+AGL++D+
Sbjct: 360 SLAIETEVSEPTYEGSVVTGNSFRDIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDN 419

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
           I+Q   G+P  SKIPILG LFR+  F R E+E+ I ATP+LV+PVA   LSRPDD+++  
Sbjct: 420 IRQAMSGLPGASKIPILGTLFRSKDFQRNESELVIIATPYLVRPVARSALSRPDDNFNPA 479

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +D ++FF  RVN+IYG  EA+   G+ Y G +GFIYK
Sbjct: 480 NDLESFFVGRVNRIYGRPEAAPPVGR-YHGNVGFIYK 515


>gi|241207157|ref|YP_002978253.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240861047|gb|ACS58714.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 499

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 230/499 (46%), Positives = 313/499 (62%), Gaps = 31/499 (6%)

Query: 2   RYLQRTFFTMMSIFLFSSN---PSVAKLPPIKEANA---AVINISDVEIGKGKKISIGLN 55
           R         +S+ + +S     S A L    EA A   +++ IS       +++ +GLN
Sbjct: 6   RRAGPLLTGCLSLAIGASGMVPASFAPLFGAGEARADSDSLVRISQTGSNAHRRLKLGLN 65

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           K +++ +P D  D+LVSDPT AD V  + R +YLFGK VGQ N+ + G  G++++NLDI 
Sbjct: 66  KAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIE 125

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           IERD++ LE+ LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL       
Sbjct: 126 IERDVSGLEVNLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATT 185

Query: 176 YANSS-----------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
              ++                 S +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + 
Sbjct: 186 RTETASGTGGDSSVALFAEGRQSSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNL 245

Query: 219 ITGSSSGPSKSFA---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           ++ SS           AD     V  G     K  + ++   T L+ALE+A  ++TLAEP
Sbjct: 246 VSNSSGMTVAQLGSPSADSAASTVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEP 305

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           TLTAISGQ+A+F SGGQ LY T + S G  +V   +YG+ L F P VLS GRI L+I+T 
Sbjct: 306 TLTAISGQAATFNSGGQQLYST-TDSDGNVTVVPFNYGISLAFKPVVLSSGRISLQIKTN 364

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           VSEPV G       +Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKIP+LG
Sbjct: 365 VSEPVAGSGNA---TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLG 421

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
            LFR   F R+ETE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+YG +
Sbjct: 422 TLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRR 481

Query: 456 EASEVEGQNYKGAIGFIYK 474
           EA   + Q + G+IGFIYK
Sbjct: 482 EAPVADAQ-FHGSIGFIYK 499


>gi|190889881|ref|YP_001976423.1| pilus assembly secretion protein [Rhizobium etli CIAT 652]
 gi|190695160|gb|ACE89245.1| pilus assembly secretion protein [Rhizobium etli CIAT 652]
 gi|327194694|gb|EGE61540.1| pilus assembly secretion protein [Rhizobium etli CNPAF512]
          Length = 499

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 227/487 (46%), Positives = 307/487 (63%), Gaps = 29/487 (5%)

Query: 12  MSIFLFSSNPSV-AKLPPIKEANAAVIN---ISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           ++I +    P+    L  + EA A   N   I+       +++ +GLNK +++ +P D  
Sbjct: 18  LAISVTGMAPATFGPLLAVDEARADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           D+LVSDP+ AD V  + R +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE  L
Sbjct: 78  DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------ 181
           RRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL          ++S      
Sbjct: 138 RRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 197

Query: 182 -----------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
                       +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + I+ SS       
Sbjct: 198 AVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFDNLISNSSGMTVAQL 257

Query: 231 A---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
               AD     V  G     K  + ++   T L+ALE+A  +RTLAEPTLTAISGQ+A+F
Sbjct: 258 GTPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPTLTAISGQAATF 317

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
            SGGQ LY T + + G  +V   +YG+ L F P VLS GRI L I+T VSEPV G     
Sbjct: 318 NSGGQQLYST-TDNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNA- 375

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             +Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR   F R+E
Sbjct: 376 --TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQE 433

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
           TE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+YG +EA   + Q + G
Sbjct: 434 TELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHG 492

Query: 468 AIGFIYK 474
           +IGFIYK
Sbjct: 493 SIGFIYK 499


>gi|222147182|ref|YP_002548139.1| component of type IV pilus [Agrobacterium vitis S4]
 gi|221734172|gb|ACM35135.1| component of type IV pilus [Agrobacterium vitis S4]
          Length = 525

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 216/522 (41%), Positives = 304/522 (58%), Gaps = 51/522 (9%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLP----------PIKEANAAVINISDVEIGKGKKI 50
           MR      F MM     S   S++ LP           +     +++ I+    G  + +
Sbjct: 7   MRLSSARLFRMMITGSLSLGLSISGLPGENMLVWRADALAAGAQSLVRIAQTGPGVRRDL 66

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
            +GLNK I++ +P D  D+LV+DP  AD V  + R +YLFGK VGQ N+ + G DG++++
Sbjct: 67  KLGLNKAIVVDLPEDAHDILVADPELADAVTRTSRRIYLFGKKVGQTNIFIFGADGREIV 126

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +LD+ IERDI  L+  L RFI +SNI+VE++SD VVL G VRT QDS RAV L++ FL  
Sbjct: 127 SLDLQIERDIEGLQTNLSRFIPESNIKVEIISDNVVLSGTVRTPQDSSRAVSLAKAFLQG 186

Query: 171 SGRNQYANSS------------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                   ++                  + +++N+L I GEDQVTLKVT+AEV R +LKQ
Sbjct: 187 GEATTRGETATSNSSGDGAVAIYAEDRQTSQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQ 246

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           +G   S T  +SG S +  ++ G   V  GG  ++      F     ++A+E+A  +RTL
Sbjct: 247 LGVSASATDGTSGISYANPSNLGNS-VDVGGTATISKTFGSFGISAYVNAMEQAGVMRTL 305

Query: 273 AEPTLTAISGQSASFTSGGQHLY---------KTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           AEP+LTAISG+ A F  GG++            T    T + + +T DYG+ L+F P VL
Sbjct: 306 AEPSLTAISGEQAKFYVGGEYRLAAGQEISTDSTTGQKTVSRTTSTVDYGIQLNFRPVVL 365

Query: 324 SPGRIGLRIQTEVSEPVI------GVNAGDMP-----SYRVRKADTTVELPSGGTIVLAG 372
           SPGRI L I+T VSEP        G +   +P     S R R+A TTVELPSGG+IV+AG
Sbjct: 366 SPGRISLAIETNVSEPTYEGSVVEGNSDSSIPGSTYLSIRKREASTTVELPSGGSIVIAG 425

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L++D+++Q   G+P +SKIPI G LFR+  F R ETE+ I ATP+LV+PV    L+RPDD
Sbjct: 426 LVQDNVRQAMSGLPGISKIPIFGTLFRSKDFVRNETELVIIATPYLVRPVTRNALARPDD 485

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +++   D   +F NRVNK+YG KEA+      Y G +G+IYK
Sbjct: 486 NFNPAGDGAMYFLNRVNKVYGRKEAT--ANGAYHGTVGYIYK 525


>gi|209551759|ref|YP_002283676.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209537515|gb|ACI57450.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 499

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 228/490 (46%), Positives = 310/490 (63%), Gaps = 28/490 (5%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAA---VINISDVEIGKGKKISIGLNKVIILQVPV 64
           FF++       +  S A L    EA A    ++ IS       +++ +GLNK +++ +P 
Sbjct: 15  FFSLAVGISGIAPASFAPLLGSSEARADSENLVRISQTGRDAHRRLKLGLNKAVVVDLPE 74

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           D  D+LVSDPT AD V  + R +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE
Sbjct: 75  DAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLE 134

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--- 181
           + L RFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL          ++S   
Sbjct: 135 VNLHRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTG 194

Query: 182 --------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                          +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + ++ SS    
Sbjct: 195 GDSSVALFAEGRQTSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTV 254

Query: 228 KSFA---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                  AD     V  G     K  + ++   T L+ALE+A  ++TLAEPTLTAISGQ+
Sbjct: 255 AQLGSPSADSATSVVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQA 314

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A+F SGGQ LY T + S G  +V   +YG+ L F P VLS GRI L+I+T VSEPV G +
Sbjct: 315 ATFNSGGQQLYST-TDSNGNVTVVPFNYGINLAFKPVVLSSGRISLQIKTNVSEPVAGSS 373

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
                +Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR   F 
Sbjct: 374 GA---TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFE 430

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           R+ETE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+YG +EA   + Q 
Sbjct: 431 RQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ- 489

Query: 465 YKGAIGFIYK 474
           + G+IGFIYK
Sbjct: 490 FHGSIGFIYK 499


>gi|15887573|ref|NP_353254.1| component of type IV pilus [Agrobacterium tumefaciens str. C58]
 gi|15155110|gb|AAK86039.1| component of type IV pilus [Agrobacterium tumefaciens str. C58]
          Length = 527

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 216/517 (41%), Positives = 314/517 (60%), Gaps = 47/517 (9%)

Query: 3   YLQRTFFTMMSIFLFSSN------PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56
           +L+ +    ++  L  S       P   +    +  +A+++ I++   G  K++ +GLNK
Sbjct: 13  HLRSSMAGGLAFCLTFSGVPGRHSPDFLRTSEAEAQSASIVRITESGTGIRKRLKLGLNK 72

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
            +++ +P D  D+LV+DP+ AD V  + R +YLFGK VGQ N+ + G  G+++++LD+ +
Sbjct: 73  ALVIDLPEDAHDILVADPSLADAVTRTSRRIYLFGKMVGQTNIFIFGDGGREIVSLDLEV 132

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           ERDI+ LE  +RRFI +S+I+VE+VSD +VL G VRT QDS RAV+L++ FL        
Sbjct: 133 ERDISGLEANIRRFIPESDIKVEIVSDNIVLTGSVRTPQDSARAVQLADAFLKGGEATTR 192

Query: 177 ANSSS-----------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
             S +                  +++N+L I GEDQVTLKVT+AEV R +LKQ+GF  SI
Sbjct: 193 NISLTGGNNGGDAAIFAERRQVSQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGSI 252

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTL 277
           + S+SG    FA         +G      G +   S  F + L+A+E+A  +RTLAEP+L
Sbjct: 253 SSSTSGNGFEFANPSNLGNAIDGASRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSL 312

Query: 278 TAISGQSASFTSGGQH---------LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           TAISG+ A F  GG           + K     T   +  T DYG+ L+F P VLSPGRI
Sbjct: 313 TAISGEQAKFYVGGDFRLAAEQEVDIDKETGRPTITRTTNTVDYGITLNFKPVVLSPGRI 372

Query: 329 GLRIQTEVSEP------VIGVNAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKDD 377
            L+I+T VSEP      V G     +P     S R R+  TTVELPSGG+IV+AGL++D+
Sbjct: 373 SLKIETNVSEPTYEGNVVTGNGGRTIPGSTYMSVRKRETSTTVELPSGGSIVIAGLVQDN 432

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
           ++Q   G+P +SKIPI G LFR+  F R ETE+ I ATP+LV+PVA   ++RPDD+++ E
Sbjct: 433 VRQAMSGLPGMSKIPIFGTLFRSKEFLRNETELVIIATPYLVRPVARNQIARPDDNFNPE 492

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +DA  +F NRVNK+YG K+  +V+   Y+G++GFIYK
Sbjct: 493 NDAAMYFMNRVNKVYGRKD--QVQAAPYQGSVGFIYK 527


>gi|86355864|ref|YP_467756.1| pilus assembly secretion protein [Rhizobium etli CFN 42]
 gi|86279966|gb|ABC89029.1| pilus assembly secretion protein [Rhizobium etli CFN 42]
          Length = 498

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 225/498 (45%), Positives = 311/498 (62%), Gaps = 30/498 (6%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPI-----KEANAAVINISDVEIGKGKKISIGLNK 56
           R  +      +S+ + ++  + A   P+       A  +++ IS       +++ +GLNK
Sbjct: 6   RRAKLLLTGCLSLAVGATGIAPASFGPLLVVNEARAAESLVRISQTGPDAHRRLKLGLNK 65

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
            +++ +P D  D+LVSDPT AD V  + R +YLFGK VGQ N+ + G  G++++NLDI I
Sbjct: 66  AVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEVVNLDIEI 125

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           ERD++ LE  LRRFI DSNI+VE+VSD +VL G VRT QD+ +A +L++ FL        
Sbjct: 126 ERDVSGLETNLRRFIPDSNIKVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTR 185

Query: 177 ANSSS-----------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
             ++S                  +V+NLL I GEDQVTLKVTI EVRR++LKQ+GF + +
Sbjct: 186 TETASGTGGDSSVALFAEGRQTSQVVNLLQIQGEDQVTLKVTITEVRREVLKQLGFDNLV 245

Query: 220 TGSSSGPSKSFA---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
           + SS           AD     V  G     K  + ++   T L+ALE+A  +RTLAEPT
Sbjct: 246 SNSSGMTVAQLGSPNADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPT 305

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           LTAISGQ+A+F SGGQ LY T + + G  +V   +YG+ L F P VLS GRI L I+T V
Sbjct: 306 LTAISGQAATFNSGGQQLYST-TDNNGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNV 364

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           SEPV G       +Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKIP+LG 
Sbjct: 365 SEPVAGSGNA---TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGT 421

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           LFR   F R+ETE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+YG +E
Sbjct: 422 LFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRRE 481

Query: 457 ASEVEGQNYKGAIGFIYK 474
           A   + Q + G+IGFIYK
Sbjct: 482 APVADAQ-FHGSIGFIYK 498


>gi|116249981|ref|YP_765819.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254629|emb|CAK05703.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 501

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 231/500 (46%), Positives = 313/500 (62%), Gaps = 31/500 (6%)

Query: 1   MRYLQRTFFTMMSIFLFSSN---PSVAKLPPIKEANA---AVINISDVEIGKGKKISIGL 54
           MR         +S+ +  S     S A L    EA A   +++ IS       +++ +GL
Sbjct: 7   MRRAGPLVTGCLSLAIGVSGMVPASFATLFAAGEARADSDSLVRISQTGSNAHRRLKLGL 66

Query: 55  NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114
           NK +++ +P D  D+LVSDPT AD V  + R +YLFGK VGQ N+ + G  G++++NLDI
Sbjct: 67  NKAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDI 126

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
            IERD++ LE+ LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL      
Sbjct: 127 EIERDVSGLEVNLRRFIRDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEAT 186

Query: 175 QYANSS-----------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
               ++                 S +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF +
Sbjct: 187 TRTETASGTGGDSSVALFAEGRQSSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDN 246

Query: 218 SITGSSSGPSKSFA---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            ++ SS           AD     V  G     K  + ++   T L+ALE+A  ++TLAE
Sbjct: 247 LVSNSSGMTVAQLGSPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAE 306

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           PTLTAISGQ+A+F SGGQ LY T + S G  +V   +YG+ L F P VLS GRI L+I+T
Sbjct: 307 PTLTAISGQAATFNSGGQQLYST-TDSDGNVTVVPFNYGINLAFKPVVLSSGRISLQIKT 365

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            VSEPV G       +Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKIP+L
Sbjct: 366 NVSEPVAGSGNA---TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLL 422

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
           G LFR   F R+ETE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+YG 
Sbjct: 423 GTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGR 482

Query: 455 KEASEVEGQNYKGAIGFIYK 474
           +EA   + Q + G+IGFIYK
Sbjct: 483 REAPVADAQ-FHGSIGFIYK 501


>gi|163757627|ref|ZP_02164716.1| putative pilus assembly transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162285129|gb|EDQ35411.1| putative pilus assembly transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 496

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 209/469 (44%), Positives = 292/469 (62%), Gaps = 19/469 (4%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
           P+  +L    +A+  +I I     G  K++ +GLNK I++ +P D  D+LV+DP  AD V
Sbjct: 32  PTTGRLATPAQASQNIIKIKKSGPGVSKRVKLGLNKAIVVDLPTDAHDILVADPALADAV 91

Query: 81  VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
             + R +YLFGK VGQ N+ + G +G++++ +++ IERD+A LE+ L RF+ DSNI+VE+
Sbjct: 92  TRTSRRLYLFGKTVGQTNIFVFGPNGEEIIAIELEIERDVAGLEVHLARFLPDSNIQVEI 151

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS---------------KKVM 185
           +SD +VL G VRT QD+ +A  L+E FL+         +++                K++
Sbjct: 152 ISDNIVLTGSVRTPQDASQAARLAEIFLTGGEATTRVTTATSEGGDAAINAEDRQKSKIV 211

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           NLL I GEDQVTLKVTIAEV R +LKQ+GF  +I+G  S    +  + +           
Sbjct: 212 NLLKIDGEDQVTLKVTIAEVSRQVLKQLGFNTTISGDGSSSFGNSPSPWL-SVPGLASVG 270

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           SV G +        + ALERA  IRTLAEP+LTAISG+ A F+ GG    ++     G  
Sbjct: 271 SVAGTISGARISADISALERAGVIRTLAEPSLTAISGEVARFSVGGSFEIESERDEDGTI 330

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                +YG+ L FTP VL+PGRI LRI+TEVSEP        +PS + R+A+T+VELPSG
Sbjct: 331 -FEEKEYGIKLEFTPVVLAPGRISLRIKTEVSEPTF-EGQSPLPSIQKREAETSVELPSG 388

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           G++VLAGL++D  +Q   G+P  SKIP+LG+LFR+  F R ETE+ I ATP+LVKPVA  
Sbjct: 389 GSMVLAGLVRDSYRQTISGMPGASKIPVLGSLFRSKEFLRNETELVIIATPYLVKPVARN 448

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +LSRPDD+++   D   FF  RVN++YG  E     G+ Y GA+GFIYK
Sbjct: 449 ELSRPDDNFNAPSDGAGFFLGRVNRVYGQMETGLPAGR-YHGAVGFIYK 496


>gi|222084469|ref|YP_002542998.1| pilus assembly secretion protein [Agrobacterium radiobacter K84]
 gi|221721917|gb|ACM25073.1| pilus assembly secretion protein [Agrobacterium radiobacter K84]
          Length = 505

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 219/493 (44%), Positives = 311/493 (63%), Gaps = 31/493 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLP-----PIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
               +S  +  +   +A+ P      + +A+ A   ++   +   + + +GLNK +++ +
Sbjct: 18  LLAALSFSVAFAGLPIAEAPVFLRTAVAKADGADSIVTISGLNTKRTLKLGLNKALVVDL 77

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           P D  D+LVSDP  AD V  + R +YLFGK VGQ N+ + G +G+++++LD+ IERDI+ 
Sbjct: 78  PADAHDILVSDPKMADAVTRTSRRIYLFGKTVGQTNIFVFGANGQEIVSLDLQIERDISG 137

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS- 181
           L+  L+RFI DS+I VE+VSD +VL G VRT QDS RA +L+  FL          ++S 
Sbjct: 138 LQANLKRFIPDSDINVEIVSDNIVLTGSVRTPQDSSRAQQLAGAFLKGGEATTRTETASG 197

Query: 182 ----------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
                            +++NLL I GEDQVTLKVT+AEV+R +LKQIGF  ++  +SSG
Sbjct: 198 TGGDSSVALFAEGRQTSQIVNLLQIEGEDQVTLKVTVAEVKRSVLKQIGFD-NLVSNSSG 256

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHALERATAIRTLAEPTLTAIS 281
            + +   +      +  G+  +  +    L +++  + L+A+E+A A+RTLAEPTLTAIS
Sbjct: 257 LTVAQLGNISSDSTAATGNGGLSALFKTALGKYNVSSYLNAMEQAGAVRTLAEPTLTAIS 316

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ+A+F SGGQ LY  +  S G  ++T + YG+ L FTP VLS GRI L +QT+VSEP  
Sbjct: 317 GQAATFNSGGQTLYSVI-DSDGNVTITPYTYGISLAFTPVVLSAGRISLHVQTQVSEPTG 375

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
              A    +Y  R ADT+VELPSGG+I LAGLL D++QQ   G P  SKIPILGALFR  
Sbjct: 376 TTGAA---TYNRRAADTSVELPSGGSIALAGLLSDNVQQSTTGTPGASKIPILGALFRQK 432

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
            F R+E+E+ I ATP+LV+PVA   ++RPDD++S  +DA  FF NRVNKIYG K+A  V 
Sbjct: 433 TFQRDESELVIIATPYLVRPVARNQIARPDDNFSPTNDAGVFFMNRVNKIYGRKDAPPVA 492

Query: 462 GQNYKGAIGFIYK 474
             ++ G +GFIYK
Sbjct: 493 DADFHGTVGFIYK 505


>gi|92116013|ref|YP_575742.1| type II and III secretion system protein [Nitrobacter hamburgensis
           X14]
 gi|91798907|gb|ABE61282.1| type II and III secretion system protein [Nitrobacter hamburgensis
           X14]
          Length = 486

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 175/489 (35%), Positives = 277/489 (56%), Gaps = 31/489 (6%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           ++ +     +  +I  F+ NP+   L P+  ++  V   +       + +S+G+ K +++
Sbjct: 10  LQAIVARSLSFAAIAAFTLNPA---LTPVFASDYRVPAATAGAKMHAQSLSLGIGKSVVV 66

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P DV+DVLV+DP  A+ VV S +  Y+ G  VGQ N+I     G+Q+   DI + RD+
Sbjct: 67  DLPRDVKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDGSGQQISAYDIAVTRDL 126

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             L   L++ + +++I+++ + D VVL G  ++  +SQ+A +L+      +         
Sbjct: 127 NGLRAALKQILPNADIKIDGLGDGVVLSGWAQSPVESQQAADLAARLAGGA--------- 177

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---------- 230
             KV+N + + G DQV LKV +AEV+RDI+KQ+G   S   S      +F          
Sbjct: 178 -DKVVNSIAVRGRDQVMLKVVVAEVQRDIIKQLGVDLSANLSYGTAVVNFNNSNPFLATG 236

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           +A   G  V  G   S+   +   + +  L A+E +  IRTLAEP+LTAISG+SA+F +G
Sbjct: 237 SALVPGNSVVGGFGKSIINGVTMPTVQATLRAMENSGVIRTLAEPSLTAISGESANFLAG 296

Query: 291 GQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGV 343
           G+    +  S T  T   +VT   +G+ L+FTP VLS GRI LR+ TE SE      I +
Sbjct: 297 GEFPIPSGVSCTNGTCTPTVTFKKFGISLNFTPVVLSEGRISLRVATEASEVNNENAIQI 356

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +   +PS + R+ADTT+E+PSGG++V+AGL+K   +Q   G+P +S+IP+LG LFR+  +
Sbjct: 357 SGTAVPSIKTRRADTTLEIPSGGSMVMAGLIKQQTKQSISGMPGVSQIPVLGTLFRSRDY 416

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
               TE+ I  TP++V+ VA +DLSRPDD ++   D +A     +N+IYG    +E   Q
Sbjct: 417 VNNNTELMILVTPYVVRAVAQKDLSRPDDGFADASDPQADLLGSINRIYGVPGRAEPARQ 476

Query: 464 NYKGAIGFI 472
            Y+G  GFI
Sbjct: 477 -YRGTYGFI 484


>gi|332560337|ref|ZP_08414659.1| Type II and III secretion system protein precursor [Rhodobacter
           sphaeroides WS8N]
 gi|332278049|gb|EGJ23364.1| Type II and III secretion system protein precursor [Rhodobacter
           sphaeroides WS8N]
          Length = 466

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/454 (29%), Positives = 232/454 (51%), Gaps = 28/454 (6%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            AA   +  +E      +++ +N+ ++++      ++ +++P  AD+   S  ++Y+ GK
Sbjct: 29  PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 88

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G+  + L+G DG+ + N+D+ +  D+A  +  LR+ +   NI V   +D +VL G V 
Sbjct: 89  APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 148

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +     RA++L+  +            +  +V NL+++ G  QV LKV  AE++R + K 
Sbjct: 149 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 196

Query: 213 IGFQH---SITGSSSGPSKSFAAD---FGGKFVSEGGD--FSVKGVLDRFSFETVLHALE 264
           +G      + +GS  G + +   +     G  +S  G+   S+   +    F+ +L ALE
Sbjct: 197 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGNPISTSGNGALSLGFSVGALEFQVLLEALE 256

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
               +RTLAEP LTA+SGQ A F +GG++     S      S+    +GV L+FTP V+ 
Sbjct: 257 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIPVASGDE-KISIEYKPFGVELNFTPVVVD 315

Query: 325 PGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
             +I L I   VS     V        + +++ R+  TTVE+  G +  +AGLL+DD + 
Sbjct: 316 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 375

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           L   +P L  IPILGALFR++ + R ++E+ I  TP LV P     L+ P D   +  + 
Sbjct: 376 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 435

Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
             F F RV    G   A+EV  Q++ G+ G++ +
Sbjct: 436 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 466


>gi|260426909|ref|ZP_05780888.1| type II and III secretion system protein [Citreicella sp. SE45]
 gi|260421401|gb|EEX14652.1| type II and III secretion system protein [Citreicella sp. SE45]
          Length = 473

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/484 (28%), Positives = 237/484 (48%), Gaps = 38/484 (7%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
            +   L     +   L     A+    N+  V  G    +++ +N+ ++++      ++ 
Sbjct: 6   YLKAALIGLALTAGPLVEGARAD----NLRVVRTGTESVLNVPMNRAVVVESDQPFAELS 61

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           +++P  AD+   S RT+Y+ GK  G   + ++  +G+ + N+D+ +  D+   +  LR+ 
Sbjct: 62  IANPAIADISSLSERTIYVLGKTPGTTTLTILDGNGRLITNVDVRVAADVTEFKERLRQI 121

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           +   +I V   +D +VL G V + Q  QRA++L++ +            + ++V NL+ +
Sbjct: 122 LPGESIEVRTANDGIVLSGTVSSAQKLQRALDLAQRY------------APERVSNLMTV 169

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---- 246
            G  QV LKV  AE++R + K +    SI G   G  +       G +++ G  +     
Sbjct: 170 GGVQQVMLKVRFAEMQRSVSKNLRSSLSIGGPIFGEDEITIGSETGTWLNSGNSYGDAVT 229

Query: 247 ---------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                    + G         +L ALE    +RTLAEP LTA+SGQ A F +GG++    
Sbjct: 230 VADGTESALLLGFNGAIEVGILLEALESKGMVRTLAEPNLTALSGQEAKFLAGGEYPVP- 288

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRV 353
           VS   G  SVT   +GV L+F PTV+    I L+++  VS       I  +A  + ++R 
Sbjct: 289 VSQEDGKLSVTYKPFGVELNFVPTVIDGDLINLQLEAAVSSIDSSNGITTDAISIDAFRR 348

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+  TTVE+  G +  +AGLL+DD + +   +P +  IP+LGALFR++ + R+++E+ I 
Sbjct: 349 RETSTTVEMRDGESFAIAGLLQDDFRDVNGQVPWIGDIPVLGALFRSAEYERQQSELVII 408

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN----KIYGPKEASEVEGQNYKGAI 469
            TP LV P     L+ P D      +   F F R +    +      A+EV  Q++ G+ 
Sbjct: 409 VTPHLVTPTRGEALALPTDRVMPPTEKDLFLFGRTSSDDARRPRTGGAAEVARQDFTGSY 468

Query: 470 GFIY 473
           G++ 
Sbjct: 469 GYVM 472


>gi|77462453|ref|YP_351957.1| Outer membrane general secretion pathway protein, secretin
           [Rhodobacter sphaeroides 2.4.1]
 gi|77386871|gb|ABA78056.1| Outer membrane general secretion pathway protein, Secretin
           [Rhodobacter sphaeroides 2.4.1]
          Length = 461

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/454 (29%), Positives = 231/454 (50%), Gaps = 28/454 (6%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            AA   +  +E      +++ +N+ ++++      ++ +++P  AD+   S  ++Y+ GK
Sbjct: 24  PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G+  + L+G DG+ + N+D+ +  D+A  +  LR+ +   NI V   +D +VL G V 
Sbjct: 84  APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +     RA++L+  +            +  +V NL+++ G  QV LKV  AE++R + K 
Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191

Query: 213 IGFQH---SITGSSSGPSKSFAAD----FGGKFVSEG-GDFSVKGVLDRFSFETVLHALE 264
           +G      + +GS  G + +   +     G    + G G  S+   +    F+ +L ALE
Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGASIATSGNGALSLGFSVGALEFQVLLEALE 251

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
               +RTLAEP LTA+SGQ A F +GG++     S      S+    +GV L+FTP V+ 
Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIPVASGDE-KISIEYKPFGVELNFTPVVVD 310

Query: 325 PGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
             +I L I   VS     V        + +++ R+  TTVE+  G +  +AGLL+DD + 
Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           L   +P L  IPILGALFR++ + R ++E+ I  TP LV P     L+ P D   +  + 
Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430

Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
             F F RV    G   A+EV  Q++ G+ G++ +
Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461


>gi|221638316|ref|YP_002524578.1| Type II and III secretion system protein [Rhodobacter sphaeroides
           KD131]
 gi|221159097|gb|ACM00077.1| Type II and III secretion system protein precursor [Rhodobacter
           sphaeroides KD131]
          Length = 461

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/454 (29%), Positives = 231/454 (50%), Gaps = 28/454 (6%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            AA   +  +E      +++ +N+ ++++      ++ +++P  AD+   S  ++Y+ GK
Sbjct: 24  PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G+  + L+G DG+ + N+D+ +  D+A  +  LR+ +   NI V   +D +VL G V 
Sbjct: 84  APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +     RA++L+  +            +  +V NL+++ G  QV LKV  AE++R + K 
Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191

Query: 213 IGFQH---SITGSSSGPSKSFAAD----FGGKFVSEG-GDFSVKGVLDRFSFETVLHALE 264
           +G      + +GS  G + +   +     G    + G G  S+   +    F+ +L ALE
Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGAPISTSGNGALSLGFSVGALEFQVLLEALE 251

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
               +RTLAEP LTA+SGQ A F +GG++     S      S+    +GV L+FTP V+ 
Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIPVASGDE-KISIEYKPFGVELNFTPVVVD 310

Query: 325 PGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
             +I L I   VS     V        + +++ R+  TTVE+  G +  +AGLL+DD + 
Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           L   +P L  IPILGALFR++ + R ++E+ I  TP LV P     L+ P D   +  + 
Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430

Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
             F F RV    G   A+EV  Q++ G+ G++ +
Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461


>gi|126461331|ref|YP_001042445.1| type II and III secretion system protein [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126102995|gb|ABN75673.1| type II and III secretion system protein [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 461

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/454 (29%), Positives = 231/454 (50%), Gaps = 28/454 (6%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            AA   +  +E      +++ +N+ ++++      ++ +++P  AD+   S  ++Y+ GK
Sbjct: 24  PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G+  + L+G DG+ + N+D+ +  D+A  +  LR+ +   NI V   +D +VL G V 
Sbjct: 84  APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +     RA++L+  +            +  +V NL+++ G  QV LKV  AE++R + K 
Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191

Query: 213 IGFQH---SITGSSSGPSKSFAAD----FGGKFVSEG-GDFSVKGVLDRFSFETVLHALE 264
           +G      + +GS  G + +   +     G    + G G  S+   +    F+ +L ALE
Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGAPISTSGNGALSLGFSVGALEFQVLLEALE 251

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
               +RTLAEP LTA+SGQ A F +GG++     S      S+    +GV L+FTP V+ 
Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIPVASGDE-KISIEYKPFGVELNFTPVVVD 310

Query: 325 PGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
             +I L I   VS     V        + +++ R+  TTVE+  G +  +AGLL+DD + 
Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           L   +P L  IPILGALFR++ + R ++E+ I  TP LV P     L+ P D   +  + 
Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430

Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
             F F RV    G   A+EV  Q++ G+ G++ +
Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461


>gi|260574616|ref|ZP_05842619.1| type II and III secretion system protein [Rhodobacter sp. SW2]
 gi|259023033|gb|EEW26326.1| type II and III secretion system protein [Rhodobacter sp. SW2]
          Length = 470

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 138/492 (28%), Positives = 239/492 (48%), Gaps = 44/492 (8%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
             R F+T     L     +   L P+   +  V+     E    + + + LN+ ++++  
Sbjct: 2   FMRNFWT---AGLLGLALATTALSPVAAQSLRVM-----EGSASRALEVPLNRAVVVESD 53

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           V   ++ +++P  AD+   S +++Y+ GK  G+  + L+G DG+ + N+++ +  D+A  
Sbjct: 54  VPFAELSIANPGIADISTLSDKSIYVLGKAPGRTTLTLLGPDGRLISNVEVQVSPDVAEF 113

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           +  LR+ +    I V   +D +VL G V +     RA++L+E +            + ++
Sbjct: 114 KERLRQILPGELIEVRTANDGIVLSGTVSSTAKLDRALDLAERY------------APER 161

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-----------------SGP 226
           V NL+++ G  QV LKV  AE++R + K +    +I GS+                    
Sbjct: 162 VSNLMSVGGTQQVMLKVRFAEMQRSVAKNLSASLAINGSTGGGNVGVNAGSGQFTAGGTR 221

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
              FA        +  G  ++        F  +L ALE    +RTLAEP LTA+SGQ A 
Sbjct: 222 DGVFAGTSQSGADNSEGVATIGFSAGSLQFAVLLEALESKGVVRTLAEPNLTALSGQEAK 281

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
           F +GG++    V+  +G+ SV    +GV ++FTP V+    I L I   VS     V   
Sbjct: 282 FLAGGEYPIP-VADGSGSISVEYKPFGVEMNFTPVVVDGDIINLTINAAVSSIDSTVTVQ 340

Query: 347 D----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +    + +++ R+  TTVE+  G +  +AGLL+DD + L   +P L  IPILGALFR++ 
Sbjct: 341 NAGFTLNAFKRRETSTTVEMRDGESFAIAGLLQDDFRDLNGQVPWLGDIPILGALFRSAE 400

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           + R ++E+ I  TP LV P     L+ P D   +  + + F F + +   G     EV  
Sbjct: 401 YQRAQSELVIIVTPHLVTPTRGEALALPTDRIRIPTERELFLFGKTSGARGAT--GEVAR 458

Query: 463 QNYKGAIGFIYK 474
           Q++ G+ G++ +
Sbjct: 459 QDFSGSYGYVME 470


>gi|146276361|ref|YP_001166520.1| type II and III secretion system protein [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554602|gb|ABP69215.1| type II and III secretion system protein [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 461

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/449 (28%), Positives = 220/449 (48%), Gaps = 28/449 (6%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
            +  +E      +++ +N+ ++++      ++ +++P  AD+   S  ++Y+ GK  G+ 
Sbjct: 29  TLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGKAPGRT 88

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
            + L+G DG+ + N+D+ +  D+A  +  LR+ +   NI V   +D +VL G V + +  
Sbjct: 89  TLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVTSAERL 148

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
            RA++L+  +            +  +V NL+++ G  QV LKV  AE++R + K +G   
Sbjct: 149 DRALDLANRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKSLGSSI 196

Query: 218 SITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFETVLHALERATAI 269
                S                  G        G   +   +    F  +L ALE    +
Sbjct: 197 YARNGSGSVIGGTGTLLQNGIPPSGAPITTAATGALGLGFSVGALEFSVLLEALESKGVV 256

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           RTLAEP LTA+SGQ A F +GG++     S      ++    +GV L+FTP V+   +I 
Sbjct: 257 RTLAEPNLTALSGQEAKFLAGGEYPIPVASGDE-KIAIEYKPFGVELNFTPVVVDGSQIN 315

Query: 330 LRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L I   VS     V+       + +++ R+  TTVE+  G +  +AGLL+DD + L   +
Sbjct: 316 LMINAAVSSIDNTVSLESAGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRNLNGQV 375

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P L  IPILGALFR++ + R ++E+ I  TP LV P     L+ P D   +  + + F F
Sbjct: 376 PWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRIKLPSEKELFLF 435

Query: 446 NRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            RV    G   A EV  Q++ G+ G++ +
Sbjct: 436 GRVT---GRGAAGEVARQDFSGSYGYVME 461


>gi|114764946|ref|ZP_01444119.1| bacterial type II/III secretion system protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542658|gb|EAU45682.1| bacterial type II/III secretion system protein [Roseovarius sp.
           HTCC2601]
          Length = 471

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 136/455 (29%), Positives = 234/455 (51%), Gaps = 32/455 (7%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           ++  V  G    +S+ +N+ ++++      ++ +++P  AD+   S RT+Y+ GK  G  
Sbjct: 29  SLRVVRTGTESVLSVPMNRAVVVESDRPFAELSIANPAIADISSLSDRTIYVLGKTPGTT 88

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
            + ++  +G+ + N+D+ +  D+   +  LR+ + +  I V   +D +VL G + + Q  
Sbjct: 89  TLTILDANGRLITNVDVRVAADVTEFKERLRQILPNEPIEVRTANDGIVLSGTISSAQKL 148

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           QRA++L+E +            + ++V NL+ + G  QV LKV  AE++R + K +    
Sbjct: 149 QRALDLAERY------------APERVSNLMTVGGVQQVMLKVRFAEMQRSVAKNLRSSL 196

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSV-------KGVLDRFSFET-----VLHALER 265
           S+TG+  G  ++  A   G  + + G+ S+          L  F+        +L ALE 
Sbjct: 197 SVTGTLFGNDETTLASETGTLIGQSGNTSINVNDDAEGAFLLGFNSGALQVGILLEALES 256

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               RTLAEP LTA+SGQ A F +GG++    VS   G T V+   +GV L+F P V+  
Sbjct: 257 KGISRTLAEPNLTALSGQEARFLAGGEYPVP-VSQDDGTTIVSYKPFGVELNFVPRVVDG 315

Query: 326 GRIGLRIQTEVSEP--VIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
             I L ++  VS      G+  G++   ++R R+  TTVE+  G +  +AGLL+DD + L
Sbjct: 316 DLINLELEAAVSSIDSSNGITTGEITIDAFRRRETSTTVEMRDGESFAIAGLLQDDFRDL 375

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P L  IP+LGALFR++ + RE++E+ I  TP LV P     L+ P D      +  
Sbjct: 376 NGQVPWLGDIPVLGALFRSAEYEREQSELVIIVTPHLVTPTRGEVLALPTDRVRPPTEKD 435

Query: 442 AFFFNRV---NKIYGPKEASEVEGQNYKGAIGFIY 473
            F + R     +      A+EV  Q++ G+ G++ 
Sbjct: 436 LFLYGRTASDTRRPQSGGAAEVAKQDFTGSYGYVM 470


>gi|218516388|ref|ZP_03513228.1| pilus assembly secretion protein [Rhizobium etli 8C-3]
          Length = 436

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 217/441 (49%), Positives = 288/441 (65%), Gaps = 25/441 (5%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           +NK +++ +P D  D+LVSDP+ AD V  + R +YLFGK VGQ N+ + G  G++++NLD
Sbjct: 1   MNKAVVVDLPEDAHDILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLD 60

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           I IERD++ LE  LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL     
Sbjct: 61  IEIERDVSGLEANLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEA 120

Query: 174 NQYANSSS-----------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
                ++S                  +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF 
Sbjct: 121 TTRTETASGTGGDSAVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFD 180

Query: 217 HSITGSSSGPSKSFA---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           + I+ SS           AD     V  G     K  + ++   T L+ALE+A  +RTLA
Sbjct: 181 NLISNSSGMTVAQLGTPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLA 240

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           EPTLTAISGQ+A+F SGGQ LY T + + G  +V   +YG+ L F P VLS GRI L I+
Sbjct: 241 EPTLTAISGQAATFNSGGQQLYST-TDNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIK 299

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           T VSEPV G       +Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKIP+
Sbjct: 300 TNVSEPVAGSGNA---TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPL 356

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG LFR   F R+ETE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+YG
Sbjct: 357 LGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYG 416

Query: 454 PKEASEVEGQNYKGAIGFIYK 474
            +EA   + Q + G+IGFIYK
Sbjct: 417 RREAPVADAQ-FHGSIGFIYK 436


>gi|84687277|ref|ZP_01015157.1| Outer membrane general secretion pathway protein, Secretin
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84664710|gb|EAQ11194.1| Outer membrane general secretion pathway protein, Secretin
           [Rhodobacterales bacterium HTCC2654]
          Length = 474

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/482 (28%), Positives = 231/482 (47%), Gaps = 38/482 (7%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
             L     S   +P    A      +  ++ G  + +++ +N+ ++++      ++ +++
Sbjct: 9   AALTGLALSWITVPLPGMAQ----TLRVMDGGVAETLNVPMNRAVVVESDQPFAEISIAN 64

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           P  AD+   S RT+Y+ GK+ G+  + L+  DG  + N+++ +  D++  +  LR+ +  
Sbjct: 65  PGIADISTLSDRTIYVLGKSQGRTTLTLLAPDGTLISNVEVQVTPDLSEFKERLRQILPG 124

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
             I V   +D +VL G V +I    RA++L+E +            +  KV NLL++ G 
Sbjct: 125 EPIEVRTANDGIVLSGTVTSIAALDRALDLAERY------------APDKVSNLLSVGGT 172

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----------FGGKFVSEG 242
            QV LKV  AE++R + K +        + +G   S                 G  +S G
Sbjct: 173 QQVMLKVRFAEMQRSVTKSLSSSLGFGTNINGLGGSIGTGALGNQANLDAASAGDLISTG 232

Query: 243 ----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
               G F+         F  +L ALE    +RTLAEP LTA+SGQ ASF +GG++   +V
Sbjct: 233 NDRTGAFTFGFNAGALQFAVMLEALENKGMVRTLAEPNLTALSGQEASFLAGGEYPIPSV 292

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVR 354
               GA  +    +GV L FTP V+    I L++   VS     V  GD    + +++ R
Sbjct: 293 -QENGAVVIDYKPFGVELTFTPRVVDQDIINLQMTASVSGLDNSVTYGDGAISVNAFKRR 351

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  TTVE+  G +  +AGLL+DD + L   +P L  +PILGALFR++ + R ++E+ I  
Sbjct: 352 ETSTTVEMRDGQSFAIAGLLQDDFRDLNGQVPWLGDVPILGALFRSADYERSQSELVIIV 411

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK--EASEVEGQNYKGAIGFI 472
           TP LV P     L+ P D      +A  F          P    A EV  Q++ G+ G++
Sbjct: 412 TPHLVTPTRGEALALPTDRVRPPSEADLFLRGNTAAPNRPTTGAAGEVARQDFTGSYGYV 471

Query: 473 YK 474
            +
Sbjct: 472 ME 473


>gi|146338123|ref|YP_001203171.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278]
 gi|146190929|emb|CAL74934.1| putative Pilus assembly protein cpaC; putative signal peptide
           [Bradyrhizobium sp. ORS278]
          Length = 500

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/478 (34%), Positives = 266/478 (55%), Gaps = 36/478 (7%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           + NP++A +       AA    +       + +++G+ K +++ +P D++DVLV+DP  A
Sbjct: 34  TLNPALAPVIAADYRPAAAAPPAADGQINARFLALGVGKSVVIDLPRDIKDVLVADPKIA 93

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           + VV S +  Y+ G  VGQ N++     G+Q+   DI ++RD+      L++ + +++I+
Sbjct: 94  NAVVRSSQRAYIIGAAVGQTNIVFFDAQGQQIAAYDIAVKRDLNGARAALKQLLPNADIQ 153

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           +E + D +VL G   +  ++Q+A EL+      +          +KV+N + + G DQV 
Sbjct: 154 IEGLGDGIVLTGSASSQIEAQQAGELAARLAGGA----------EKVVNSITVRGRDQVM 203

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSVKGVLD 252
           LKVT+AEV+R ++KQ+G   S   +       FA       +G   VS     +  G   
Sbjct: 204 LKVTVAEVQRSVVKQLGIDLSGQLNYGTAVVKFANSNPFTAYGSNLVSNNAVSAAFG--S 261

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSV 307
             S +  L A+E A  IRTLAEP LTAISG+SA+F +GG+           ++    T +
Sbjct: 262 TPSVQATLRAMENAGVIRTLAEPNLTAISGESATFIAGGEFPVPAGYSCDPTTHVCTTQI 321

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------------PVIGVNAGDMPSYRVR 354
           +   +G+ L+FTP VLS GRI +R+ TEVSE                 VN+  +PS + R
Sbjct: 322 SFKKFGISLNFTPIVLSEGRISMRVMTEVSELSNENSITLSQAVSSTTVNSLTVPSIKTR 381

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +A+TT+E+PSGG + +AGL++   +Q   G+P L ++P+LGALFR+  +   +TE+ +  
Sbjct: 382 RAETTLEIPSGGAMAMAGLIQQQTKQAISGMPGLMQLPVLGALFRSRDYVNNQTELMVLV 441

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
           TPF+V+ V+ +DLSRPDD ++   D +A     +N+IYG    +E  G+NY+G  GFI
Sbjct: 442 TPFVVRAVSQKDLSRPDDGFAAASDPQADLLGSINRIYGVPGRTE-PGRNYRGTYGFI 498


>gi|241518288|ref|YP_002978916.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240862701|gb|ACS60365.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 512

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 204/459 (44%), Positives = 290/459 (63%), Gaps = 23/459 (5%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           VI++++  +   + +SIGLNK +I+++P D  D++VSDP  +D +V + RT++LFGK VG
Sbjct: 57  VISVTETGVNVTRHVSIGLNKTLIVELPQDAHDIVVSDPGVSDAIVRATRTIFLFGKKVG 116

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           Q N+ ++  + + ++N+DI +ERDIA LE  LRR I D+ I+VE++SD +VL G VR+ Q
Sbjct: 117 QTNIFILDANKRPIVNIDIAVERDIAGLETDLRRLIPDAAIKVEIISDNIVLTGTVRSAQ 176

Query: 156 DSQRAVELSETFLSQSGRNQ-----------------YANSSSKKVMNLLNIAGEDQVTL 198
           DS +A +L+  F+                          +    K++NLL IA +DQV L
Sbjct: 177 DSAQAADLASAFVKGGEATTRTQSASSGGSQGSVALVAEDRQESKIINLLRIAADDQVML 236

Query: 199 KVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           K+TIAEV+R+ILKQ+GF +   +  GS+     + + D        G      G   +  
Sbjct: 237 KMTIAEVKREILKQLGFDNELKNAGGSTIAQLGTASTDATTATSGGGLSALFSGSFGKHG 296

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
             T L+ALE+A  +RTLAEPTLTA+SGQSASF +GG+ LY + +   G T+ T + YG+ 
Sbjct: 297 LSTTLNALEQAKVVRTLAEPTLTAVSGQSASFQAGGEVLY-SNTDRDGNTTQTPYSYGIS 355

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L F P VL+ GRI L+I TEVSEPV  ++ G  P+Y  R   TTVELPSGG+I LAGL++
Sbjct: 356 LSFKPIVLTSGRISLQISTEVSEPVTSIS-GSSPTYGKRSTSTTVELPSGGSIALAGLIR 414

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           D+  +   G P+L+KIP  GALFR + F R ETE+ I ATP+LV+PVA +DL+RPDD+ S
Sbjct: 415 DNFNRTSNGTPVLNKIPGFGALFRQTSFERNETELVIIATPYLVRPVAAKDLNRPDDNLS 474

Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
             DDA     +R+NK+YG  +  E   Q Y G +GFIYK
Sbjct: 475 PADDASQGLLDRINKLYGNGKTLEPTAQ-YHGTVGFIYK 512


>gi|86748907|ref|YP_485403.1| type II and III secretion system protein [Rhodopseudomonas
           palustris HaA2]
 gi|86571935|gb|ABD06492.1| type II and III secretion system protein [Rhodopseudomonas
           palustris HaA2]
          Length = 479

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/481 (33%), Positives = 270/481 (56%), Gaps = 21/481 (4%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           R+++    T M++    +   +    P+K ++              + +++G+ K +++ 
Sbjct: 8   RFIRTLTGTAMAVSAVVALTMLPPWTPVKASDYRATTTQTGGGMNARPLALGIGKSVVID 67

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +P D++DVLV+DP  A+ VV S +  Y+ G  VGQ N++     G+Q+   DI + RD+ 
Sbjct: 68  LPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTRDLN 127

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +   L++ I +++IRVE + D V+L G V T  ++Q+A +L+      +          
Sbjct: 128 GIRAALQQSIPNADIRVEGLGDGVILMGSVATPIEAQQAADLAARLAGDA---------- 177

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            KV+N + I G DQV LK+T+AEV+RDI+KQ+G   +   S      SF          +
Sbjct: 178 SKVVNNIAIRGRDQVMLKITVAEVQRDIVKQLGVDLTANLSYGTSVVSFTNTNPFTQSGQ 237

Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
               G+       +  S    L A+E A  +RTLAEP LTAISG+ ASF +GG+    + 
Sbjct: 238 ALVSGNALTTSFGNGPSITATLKAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPVPSG 297

Query: 299 SSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSY 351
            + T A    SV+   +GV+L+FTP VLS GRI L++ TEVSE      + ++   +PS 
Sbjct: 298 VTCTNAVCTPSVSYKKFGVLLNFTPVVLSEGRISLKVATEVSEVSSDNSVTISGTTVPSI 357

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R+ D+TVE+PSGG++ +AGL+++  +Q   G+P +++IPILG LFR+  +   ++E+ 
Sbjct: 358 KTRRVDSTVEIPSGGSLAMAGLIQEQTKQAINGMPGMTQIPILGTLFRSRDYINRQSELM 417

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
           +  TP++V+ VA +DLSRPDD ++   D ++     +N+IYG    +  + Q Y+G  GF
Sbjct: 418 VLVTPYVVRAVAPKDLSRPDDGFADASDPQSDLLGSINRIYGVPGRTG-QSQTYRGRFGF 476

Query: 472 I 472
           I
Sbjct: 477 I 477


>gi|239833237|ref|ZP_04681566.1| type II and III secretion system protein [Ochrobactrum intermedium
           LMG 3301]
 gi|239825504|gb|EEQ97072.1| type II and III secretion system protein [Ochrobactrum intermedium
           LMG 3301]
          Length = 507

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 196/510 (38%), Positives = 289/510 (56%), Gaps = 39/510 (7%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKE-ANAAVINISDVEIGKGKKISIGLNKVII 59
           MR   R       I L +   +   LP     A AA   +      + + I +GLNK ++
Sbjct: 1   MRKTNRVRPYSARIALLAGALATVSLPLADMTAMAAAGIVKVGSQQRSQTIKLGLNKSVV 60

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           L +P D  DVLVS+PT AD V  + R +YLFGK VGQ N+ + G +G+Q+ ++D+ IERD
Sbjct: 61  LDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGQNGEQVASIDVEIERD 120

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--SQSGRNQYA 177
           ++ L   L+R I  S+IRVE+++D VVL G V+T QDS +A +L+  F+   ++   QY+
Sbjct: 121 VSGLSSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQYS 180

Query: 178 NSSS-------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
            ++S                     ++N+L I GEDQVTLKVT+AEV R ++KQ+G   +
Sbjct: 181 TTASAPTDGGGVAINNPDWGRRQSAIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVNMT 240

Query: 219 ITGSSSGPS-KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
            +G S+G S    + +  G   +   D      L   +F   L A+E A  ++TLAEPTL
Sbjct: 241 GSGVSNGISYGGISENIAGAIGNNLSDTGFG--LATSNFSAYLRAMESAGVMKTLAEPTL 298

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           TAISG+ A+F  GG++      +          +   +YG+ L F PTVL PGRI L+I+
Sbjct: 299 TAISGEKAAFNVGGEYNVINSVTYDDDGKRTNQLAKINYGIGLEFMPTVLGPGRISLKIR 358

Query: 334 TEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           T VSEP                 + S R R ADTTVELPSGG++++ GL++D+++Q   G
Sbjct: 359 TSVSEPTTEGAGTTNKMEGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSG 418

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
            P L+KIP+LGALFR+  F R E+E+ +  TP+L +PVA + L+RPDD+ +   D   + 
Sbjct: 419 FPGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDNLNPASDGAGYI 478

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
             +VN++YG  E     G+ Y G +G+IYK
Sbjct: 479 LGKVNRVYGTMETKLPPGR-YNGVVGYIYK 507


>gi|39936740|ref|NP_949016.1| type II and III secretion system protein [Rhodopseudomonas
           palustris CGA009]
 gi|192292566|ref|YP_001993171.1| type II and III secretion system protein [Rhodopseudomonas
           palustris TIE-1]
 gi|39650596|emb|CAE29119.1| putative exporter protein, cpaC [Rhodopseudomonas palustris CGA009]
 gi|192286315|gb|ACF02696.1| type II and III secretion system protein [Rhodopseudomonas
           palustris TIE-1]
          Length = 480

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/481 (33%), Positives = 271/481 (56%), Gaps = 30/481 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK----GKKISIGLNKVIILQVP 63
           F+   +I L S+  ++  +P     +A+    + V         + IS+G+ K +++ +P
Sbjct: 12  FWRGTAIAL-SAAVALTLIPSWTAVHASDYRAAPVPPASSGLNAQSISLGIGKSMVIDLP 70

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            D++DVLV+DP  A+ VV S +  Y+ G  VGQ N++     G+Q+   DI + RD+  L
Sbjct: 71  RDIKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIVFFDSAGRQIAAYDIAVTRDLNGL 130

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
              L++ + ++ I+VE + D V+L+G V +  D+Q+A +L+   + +           KK
Sbjct: 131 RTALKQTLPNAEIQVEGLGDGVMLNGWVTSPIDAQQAYDLAVRLVGED----------KK 180

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           V+N + + G DQV LK+T+AEV+RDI+KQ+G   S   +      +F  +    F   GG
Sbjct: 181 VVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLSANMAYGTAVVNF--NNSNPFTQSGG 238

Query: 244 DFSVKGVLDR-----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                  L        S    L A+E A  +RTLAEP LTAISG+ A+F +GG+    + 
Sbjct: 239 PLVSSNALTTKFGSLPSVTATLRAMESAGVVRTLAEPNLTAISGEPATFLAGGEFPVPSG 298

Query: 299 SSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSY 351
            + T      SVT   +G++L+FTP V++ GRI L++ TEVSE        ++   +PS 
Sbjct: 299 VTCTNGVCTPSVTFKKFGILLNFTPVVMTAGRISLKVMTEVSEVSSDNSVIISNMSVPSI 358

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R+ ++TVE+PSGG++ +AGL+++  +Q   G+P  +++PILG LFR+  +   +TE+ 
Sbjct: 359 KTRRVESTVEIPSGGSLAMAGLIQEQTKQAINGMPGAAQLPILGTLFRSRDYINRQTELM 418

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
           +  TP++V+ VA +DLSRPDD ++   D ++     +NK+YG    +E   + Y+G  GF
Sbjct: 419 VLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSINKLYGVPGRTE-PARTYRGRFGF 477

Query: 472 I 472
           I
Sbjct: 478 I 478


>gi|255262444|ref|ZP_05341786.1| outer membrane general secretion pathway protein, Secretin
           [Thalassiobium sp. R2A62]
 gi|255104779|gb|EET47453.1| outer membrane general secretion pathway protein, Secretin
           [Thalassiobium sp. R2A62]
          Length = 480

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/478 (29%), Positives = 233/478 (48%), Gaps = 28/478 (5%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T+   M   L     + + +P    A      +  +       +++ +N+ ++++  V  
Sbjct: 19  TYDRFMKAALMGLFVATSSVPAAVSAE----TLRVMRGAPSSALNVPMNRAVVVESDVPF 74

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            ++ +++P  AD+   S RT+Y+ GK  G+  + L+G DG+ + N+D+ +  DIA  +  
Sbjct: 75  AELSIANPGIADISTLSDRTIYVLGKLPGRTTLTLLGPDGRLITNVDVHVTPDIAEFKER 134

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L + +   NI V   +D +VL G+V +     RA++L+E +            +  +V N
Sbjct: 135 LSQILPGENIEVRTANDGIVLSGVVSSSARLTRALDLAERY------------APDRVSN 182

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADFGGKFVSEG 242
           L+++ G  QV L+V  AE++R + K +    +I G    +++G      A  GG      
Sbjct: 183 LMSVGGTQQVMLRVRFAEMQRSVRKSLSSSVNIFGTGFSTAAGNINGVQAAGGGITTDAT 242

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G            F  +L ALE    +RTLAEP LTA+SGQ A F +GG++    V+   
Sbjct: 243 GAAFFGIDAGDIQFNVLLEALESKGVVRTLAEPNLTALSGQEAHFLAGGEYPVP-VAQEG 301

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-----DMPSYRVRKAD 357
           G T+V   D+GV L F P V+    I L ++  VS               + ++R R+  
Sbjct: 302 GTTTVEYKDFGVELTFLPVVVDQDLINLTLKASVSSIDTTNGVQVGSDFTIAAFRTRETS 361

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTVE+  G +  +AGLL+DD   L   +P L  +P+LGALFR++ +NR ++E+ I  TP 
Sbjct: 362 TTVEMRDGESFAIAGLLQDDFTDLNGQVPWLGDVPVLGALFRSAEYNRSQSELVIIVTPH 421

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFIY 473
           LV P     L+ P D      +   F F RV     P+   A EV  Q++ G+ G++ 
Sbjct: 422 LVTPTRGEALALPTDRVRPPTERDLFLFGRVAASDAPQSGAAGEVAKQDFSGSYGYVM 479


>gi|56697919|ref|YP_168290.1| type II/III secretion system protein [Ruegeria pomeroyi DSS-3]
 gi|56679656|gb|AAV96322.1| bacterial type II/III secretion system protein [Ruegeria pomeroyi
           DSS-3]
          Length = 475

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 231/472 (48%), Gaps = 31/472 (6%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           +  ++A  P    A A  + +  V+ G  + + + +N+ I+++      ++ +++   AD
Sbjct: 19  TGLALACSPMTGLAQAQDLRV--VKQGAAETLDVPMNRAIVVESETPFAELSIANAGIAD 76

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
           +   S RT+Y+ GK+ G   + L    G+ + N+++ +  D+A  +  L++ + +  I V
Sbjct: 77  ISSLSDRTIYVLGKSPGLTTLSLFDAGGRLITNVNVRVSFDVAEFKERLKQILPNEKIEV 136

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
              +D +VL G   +    QRA++L+E +            + ++V NL+++AG  QV L
Sbjct: 137 RTANDGIVLSGTASSTARLQRALDLAERY------------APERVSNLMSVAGVQQVML 184

Query: 199 KVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFAADFGGKFVS---EGGDFSVK 248
           KV  AE++R + K +     ++G       ++   S S     GG   +     G     
Sbjct: 185 KVRFAEMQRSVSKSLSASLGVSGGNIVGGLNTLNSSGSLTNAIGGSIPALNDNAGAILFG 244

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                     +L ALER   +RTLAEP L+A+SGQ A F +GG++    V+   G  +V 
Sbjct: 245 FSAGSTQVRLLLEALERKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQRDGLFTVE 303

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPS 364
              +GV + F P V+    I L +   VS       + VN  D+ +++ R+  TTVEL  
Sbjct: 304 YKPFGVEMAFIPRVVDGDLINLELLAAVSSLDPNNSVTVNGFDIAAFQRRETSTTVELKD 363

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G +  +AGL++D+     + +P L  +P+LGALFR++ + R +TE+ I  T  LV P   
Sbjct: 364 GESFAIAGLIEDEFLDNNQQLPWLGDVPVLGALFRSANYQRSQTELVIIITAHLVSPTRG 423

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFIYK 474
             L+ P D      +A  F   +  +    +   ASEV  Q++ G+ G++ +
Sbjct: 424 EALALPTDRVKPPSEADLFLRGKTARTERARGGAASEVARQDFSGSYGYVLE 475


>gi|110636321|ref|YP_676529.1| type II and III secretion system protein [Mesorhizobium sp. BNC1]
 gi|110287305|gb|ABG65364.1| type II and III secretion system protein [Chelativorans sp. BNC1]
          Length = 516

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 196/497 (39%), Positives = 287/497 (57%), Gaps = 54/497 (10%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
           P I  + A    + +V     +++ +GLNK ++L +P D  D+LV++P  AD V  + R 
Sbjct: 25  PVIIPSAARGEGVIEVSGAGTERLKLGLNKTLVLDLPSDAYDILVANPAVADAVTRTARR 84

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
           +YLFGK VG+ N+ + G  G+Q+  +D+ +ERD+A LE  L+RFI +SNI VE+++D VV
Sbjct: 85  IYLFGKQVGETNIFVFGAGGEQIARIDVAVERDVAGLEQYLKRFIPNSNIDVELINDNVV 144

Query: 147 LHGMVRTIQDSQRAVELSETFL--SQSGRNQYANSSS-------------------KKVM 185
           L G V T  D+ RA +L+  F+   ++   QY+ +++                    K++
Sbjct: 145 LTGTVETPLDASRAAQLATIFVTGGEATTGQYSQTAAAPTDGGGVAISNPDSARQVSKIV 204

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGG 243
           N+L I GEDQVTLKVT+AEV R ++KQ+G     +GS  G S     D  +G    +   
Sbjct: 205 NMLQIIGEDQVTLKVTVAEVSRSVMKQLGVNMIGSGSLDGISWGAIVDSPYGLGAPASAS 264

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT------ 297
             ++ G L     +  L+A+E+A  ++TL+EPTLTAISG+ A+F  GG+    T      
Sbjct: 265 QLALGGSL----LQGYLNAMEQAGVMKTLSEPTLTAISGEKATFKVGGEFNLVTGQKVEQ 320

Query: 298 -----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------------ 340
                  +      V   DYG+ L FTPTVLSPGRI L+++T VSEP             
Sbjct: 321 GDASKGQADQLTYEVEKIDYGIGLEFTPTVLSPGRISLKVRTSVSEPTFEGSFSLGSPSI 380

Query: 341 ---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                    +  S R R ADTTVELPSGG++++AGL++DD++Q   G+P LSKIPILG L
Sbjct: 381 GGRFNSPGMNALSIRKRLADTTVELPSGGSMMIAGLVRDDVRQTINGLPGLSKIPILGTL 440

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           FR+  F R ETE+ I  TP+L +PVA   L+RPDD+++   D    F  RVN+IYG  + 
Sbjct: 441 FRSRDFVRNETELVIIITPYLARPVARTALARPDDNFNPPSDGAGIFLGRVNRIYGAMKT 500

Query: 458 SEVEGQNYKGAIGFIYK 474
           +  +G+ Y G +G+IYK
Sbjct: 501 NLPKGR-YHGVVGYIYK 516


>gi|84501676|ref|ZP_00999848.1| bacterial type II/III secretion system protein [Oceanicola
           batsensis HTCC2597]
 gi|84390297|gb|EAQ02856.1| bacterial type II/III secretion system protein [Oceanicola
           batsensis HTCC2597]
          Length = 474

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/490 (26%), Positives = 234/490 (47%), Gaps = 39/490 (7%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T+ + +   LF    +    P   +A      ++ V      ++++ +N+ ++++  V  
Sbjct: 2   TYSSYLRAALFGMTLATGSFPVTAQAE----RLTIVNRNSESRLNVAINRAVVVESDVSF 57

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            ++ +++P  AD+   S  ++Y+ GK  G   + L+  +G+ + N+D+++  DI+  +  
Sbjct: 58  AELSIANPQIADISSLSDTSIYVLGKTPGITTLTLLDAEGRLISNVDVVVSADISEFKER 117

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           LR+ + D  I V   +D +V+ G+V + Q  QRA++L+E +            + ++V N
Sbjct: 118 LRQILPDEKIEVRTANDGIVMSGVVSSSQKLQRALDLAERY------------APERVSN 165

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------- 235
           L+++ G  QV LKV  AE++R + K +    +  GS  G +   +   G           
Sbjct: 166 LMSVGGVQQVMLKVRFAEMQRSVSKSLSASLAADGSIFGGNVGVSGGTGRYSNAGNQGNG 225

Query: 236 -----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                    +  G   +           +L ALE    +RTLAEP LTA+SGQ A F +G
Sbjct: 226 LGGNLPTPNTNSGATLLGFNAGAVQVGVLLEALEAKGVVRTLAEPNLTALSGQEAKFLAG 285

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAG 346
           G++    V+   G  +V    +GV ++F P V+    I L +Q  VS         +NA 
Sbjct: 286 GEYPVP-VAQDGGTVTVEFKPFGVEMNFIPRVVDDDIINLELQAAVSAIDPNNGFELNAF 344

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            + ++  R+  TTVEL  G +  +AGLL+DD +     +P L  IP++GALFR++ + R 
Sbjct: 345 RIDAFTRRETSTTVELRDGDSFAVAGLLQDDFRDTNSQVPWLGDIPVIGALFRSADYQRN 404

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK--IYGPKEASEVEGQN 464
           ++E+ I  T  LV P     L+ P D      +   F F R  K        A EV  Q+
Sbjct: 405 QSELVIIITAHLVSPTRGEALALPTDRVKPPSEKDLFLFGRTAKDTRKLRGAAKEVAKQD 464

Query: 465 YKGAIGFIYK 474
           + G+ G++ +
Sbjct: 465 FNGSYGYVME 474


>gi|27376550|ref|NP_768079.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 gi|27349691|dbj|BAC46704.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
          Length = 496

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/493 (32%), Positives = 263/493 (53%), Gaps = 34/493 (6%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           MR       +  +      NP++  +       AA   ++       + +S+G+ K I++
Sbjct: 15  MRTSMVRALSFSAALALVLNPALTPVVAADYRPAAP--VAADGQMNARFLSLGVGKSIVI 72

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P D++DVLV+DP  A+ VV S +  Y+ G  VGQ N++     G+Q+   DI ++RD+
Sbjct: 73  DLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSAGQQIAAYDIAVKRDL 132

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             +   L++ + +S+I+++ + + +VL G      ++Q+A +L+      +         
Sbjct: 133 NGVRAALKQILPNSDIQIDGLGEGIVLTGTAANPMEAQQANDLAARLAGGA--------- 183

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
             KV+N + + G DQV LKVT+AEV R I+KQ+G   +   +      +F+       + 
Sbjct: 184 -DKVVNSIVVRGRDQVMLKVTVAEVARSIVKQLGIDLTANLNYGTSVVTFSNSNPFTALG 242

Query: 241 EG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           +    G+          S +  L A+E A  IRTLAEP LTAISG+SA+F +GG+     
Sbjct: 243 KNLVDGNSLTTKFGATPSVQATLRAMETAGVIRTLAEPNLTAISGESATFIAGGEFPVPA 302

Query: 298 V-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------------P 339
                 ++    T ++   +G+ L+FTP VL+ G+I LR+ TEVSE              
Sbjct: 303 GYACDPTTHVCTTQISFKKFGISLNFTPVVLTEGKISLRVMTEVSELSNENAITLSQAVT 362

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              VN+  +PS + R+A+T++E+PSGG + +AGL++   +Q   G+P L ++PILG LFR
Sbjct: 363 STSVNSLTVPSIKTRRAETSLEIPSGGAMAMAGLIQQQTKQAVSGLPGLMQLPILGTLFR 422

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           +  F    TE+ +  TP++V+ VA +DLSRPDD +S   D +      +N+IYG    +E
Sbjct: 423 SRDFVNNATELVVIVTPYIVRAVAQKDLSRPDDGFSAPADPQVELLGNINRIYGVPGRTE 482

Query: 460 VEGQNYKGAIGFI 472
             G+NY+G  GFI
Sbjct: 483 -PGRNYRGTYGFI 494


>gi|148258235|ref|YP_001242820.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
 gi|146410408|gb|ABQ38914.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
          Length = 497

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/476 (34%), Positives = 266/476 (55%), Gaps = 35/476 (7%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           + NP++A +       A     +D +I   + +++G+ K +++ +P D++DVLV+DP  A
Sbjct: 34  TLNPALAPVIAADYHPAVTAAAADGQI-NARFLALGVGKSVVIDLPRDIKDVLVADPKIA 92

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           + VV S +  Y+ G  VGQ N++     G+Q+   DI ++RD+      L++ + +S+I+
Sbjct: 93  NAVVRSSQRAYIIGATVGQTNIVFFDAQGQQIAAYDIAVKRDLNGARAALKQLLPNSDIQ 152

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           +E + D++VL G   +  ++Q+A EL+      +           KV+N + + G DQV 
Sbjct: 153 IEGLGDSIVLSGSAASQIEAQQAGELAARLAGGA----------DKVVNSITVRGRDQVM 202

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---RF 254
           LKVT+AEV+R ++KQ+G   S   +       FA      F + G +      ++     
Sbjct: 203 LKVTVAEVQRSVVKQLGIDLSGQLNYGTAVVKFAN--SNPFTAYGSNLVSNNAINASFGS 260

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTT 309
           S +  L A+E A  IRTLAEP LTAISG+SA+F +GG+           ++    T ++ 
Sbjct: 261 SVQATLRAMENAGVIRTLAEPNLTAISGESATFIAGGEFPVPAGYSCDPTTHVCTTQISF 320

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------------PVIGVNAGDMPSYRVRKA 356
             +G+ L+FTP VL+ GRI LR+ TEVSE                 VN+  +PS + R+A
Sbjct: 321 KKFGISLNFTPVVLAEGRISLRVMTEVSELSNENSITLSQAVTSSTVNSLTVPSIKTRRA 380

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +TT+E+PSGG + +AGL++   +Q   G+P L ++P+LG LFR+  +   +TE+ +  TP
Sbjct: 381 ETTLEIPSGGAMAMAGLIQQQTKQAISGMPGLMQLPVLGTLFRSRDYVNNQTELMVLVTP 440

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
           F+V+ VA +DLSRPDD ++   D +A     +N+IYG     E  G++Y+G  GFI
Sbjct: 441 FVVRAVAQKDLSRPDDGFAAASDRQADLLGSINRIYGVPGRVE-PGRSYRGTYGFI 495


>gi|163738370|ref|ZP_02145785.1| bacterial type II/III secretion system protein [Phaeobacter
           gallaeciensis BS107]
 gi|161388291|gb|EDQ12645.1| bacterial type II/III secretion system protein [Phaeobacter
           gallaeciensis BS107]
          Length = 484

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/474 (26%), Positives = 232/474 (48%), Gaps = 32/474 (6%)

Query: 18  SSNPSVAKLPPIKEANAAVIN-ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
           ++  +   L     A+AA  N +  V+ G    + + +N+ ++++  V   ++ +++P+ 
Sbjct: 24  AAALTGLSLVCFPVADAAWGNGLRVVKKGTAANLEVPMNRAVVVESDVPFSELSIANPSI 83

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  D++  +  LR+ +    I
Sbjct: 84  ADISSLSDRTIYVLGKSPGLTTLTLLDASGRLITNVDVRVAADVSEFKERLRQILPGEKI 143

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            V   +D +VL G+V +    QRA++L+E +            + ++V NL+++ G  QV
Sbjct: 144 EVRTANDGIVLSGVVSSSARLQRALDLAERY------------APERVSNLMSVGGVQQV 191

Query: 197 TLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPSKSFAADFGGKFVS---EGG 243
            LKV  AE++R + K +     +            S+     +      G   +     G
Sbjct: 192 MLKVRFAEMQRTVSKSLSASLGVKGGNSVGVNGGTSTLNTQGALTNSLSGNIPAGNDNTG 251

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F        F    +L ALE+   +RTLAEP L+A+SGQ A F +GG++    V+   G
Sbjct: 252 AFVFGFNAGAFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDG 310

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTT 359
             ++    +G+ L+F P V+    I L ++  VS         +N   + ++  R+  TT
Sbjct: 311 IITIEFKPFGIELNFVPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRETSTT 370

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VEL  G +  +AGL++D+ +     +P +  +P+LG+LFR++ + R +TE+ I  +  LV
Sbjct: 371 VELRDGESFAIAGLIRDEFRDSSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLV 430

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            P     LS P D      +++ F   RV K      ASEV  Q++ G+ G++ 
Sbjct: 431 TPTRGEALSLPTDRIRPPSESELFLMGRVAKGQ-KGPASEVAKQDFNGSYGYVM 483


>gi|154250689|ref|YP_001411513.1| type II and III secretion system protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154154639|gb|ABS61856.1| type II and III secretion system protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 491

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 164/470 (34%), Positives = 258/470 (54%), Gaps = 29/470 (6%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
           V+        +A ++ I    IG+  + I +GLNK  I+++P+  +DVLVS+P   D VV
Sbjct: 31  VSPAGGAFAGDARLVKIDQGGIGQSSRSIVLGLNKAAIVELPIAARDVLVSNPAIVDAVV 90

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
            + +  YL G  VGQ N       G+Q+LNL+I + RD+  L  +LR++   + I VE +
Sbjct: 91  RTNKRTYLIGLAVGQTNAFFFNEAGQQILNLEIRVARDLTGLRESLRQYFPKARIDVESI 150

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
           +D VVL GMV +  D+ +A + +  ++             + V+N+L I G++QV LKVT
Sbjct: 151 NDHVVLSGMVASATDASKAQDFAARYIG---------GDKEHVLNMLGIEGKEQVMLKVT 201

Query: 202 IAEVRRDILKQIGFQHSITGSSS------GPSKSF---AADFGGKFVSEGGDFSVKGVLD 252
           +AE++R+++KQ+G   S   +          S SF       GG   +       +    
Sbjct: 202 VAEMQRNVIKQLGVDLSTAANFGDFALRLATSNSFSVQGGSLGGLTTAADAADPTRYQSG 261

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             + ++ + ALER   +RTLAEP LTAISG+SA F +GG+    T     G   +    +
Sbjct: 262 DVTVDSAIRALERDGILRTLAEPNLTAISGESAKFLAGGEFPVPTSRDRDGNVQLEFKPF 321

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRKADTTVELP 363
           GV L+FTP VLS GRI L+I TEVSE              +   +P  +VR+A+TT+ELP
Sbjct: 322 GVGLNFTPVVLSEGRISLKISTEVSELTSEGAFVFQSTSADGVTVPGLKVRRAETTLELP 381

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SGG++V+AGLL D ++Q  +G+P +  +P+LG LFR+  + + ETE+ +  TP+LV P +
Sbjct: 382 SGGSLVMAGLLSDTMRQNIDGVPGVKDVPVLGQLFRSRDYQKNETELVVIVTPYLVDPTS 441

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            ++L  P D ++   D       R+N  YG + A+  +  + +G +GFI 
Sbjct: 442 RKNLVLPTDGFAPASDMDTILMGRLNATYGARGAAPGD-HSLQGPVGFIV 490


>gi|153008059|ref|YP_001369274.1| type II and III secretion system protein [Ochrobactrum anthropi
           ATCC 49188]
 gi|151559947|gb|ABS13445.1| type II and III secretion system protein [Ochrobactrum anthropi
           ATCC 49188]
          Length = 507

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 194/509 (38%), Positives = 286/509 (56%), Gaps = 37/509 (7%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKE-ANAAVINISDVEIGKGKKISIGLNKVII 59
           MR  +R       + L +S  +   LP     A AA   +      + + I +GLNK ++
Sbjct: 1   MRKTKRVRPYSAKVALLTSALAAFSLPLTDMSAMAAAGVVKVGSQQRSQTIKLGLNKSVV 60

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           L +P D  DVLVS+PT AD V  + R +YLFGK VGQ N+ + G +G+Q+ ++D+ IERD
Sbjct: 61  LDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGPNGEQVASIDVEIERD 120

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG------- 172
           ++ +   L+R I  S+IRVE+++D VVL G V+T QDS +A +L+  F+S          
Sbjct: 121 VSGISSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQFT 180

Query: 173 --------------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                          N   N  +  ++N+L I GEDQVTLKVT+AEV R ++KQ+G   +
Sbjct: 181 TTASAPTDGGGVAINNPDRNRRASAIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVNMA 240

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            +G S+G S    ++     +      +  G L   +F   L A+E A  ++TLAEPTLT
Sbjct: 241 GSGVSNGISYGGISESIAGAIGNNLSDTGFG-LATSNFSAYLRAMESAGVMKTLAEPTLT 299

Query: 279 AISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           AISG+ A+F  GG++                 +   +YG+ L F PTVL PGRI L+I+T
Sbjct: 300 AISGEKAAFNVGGEYNVINSVKYDDDGKRTNELAKINYGIGLEFMPTVLGPGRISLKIRT 359

Query: 335 EVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            VSEP                 + S R R ADTTVELPSGG++++ GL++D+++Q   G 
Sbjct: 360 SVSEPTTEGAGTTNKMDGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGF 419

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P L+KIP+LGALFR+  F R E+E+ +  TP+L +PVA + L+RPDD+ +   D   +  
Sbjct: 420 PGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDNLNPASDGAGYIL 479

Query: 446 NRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            +VN++YG  E     G+ Y G +G+IYK
Sbjct: 480 GKVNRVYGTMETKLPPGR-YNGVVGYIYK 507


>gi|254466441|ref|ZP_05079852.1| bacterial type II/III secretion system protein [Rhodobacterales
           bacterium Y4I]
 gi|206687349|gb|EDZ47831.1| bacterial type II/III secretion system protein [Rhodobacterales
           bacterium Y4I]
          Length = 468

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/477 (25%), Positives = 230/477 (48%), Gaps = 33/477 (6%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           +       S+  +P    A A  + +  V+ G    + + +N+ ++++  +   ++ +++
Sbjct: 7   VAAALMGLSLIGVPQADGAWAQSLRV--VKKGTAATLDVPMNRAVVVESEIPFAELSIAN 64

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           P+ AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  D+   +  LR+ + +
Sbjct: 65  PSIADISSLSDRTIYVLGKSPGLTTLTLLDGSGRLITNVDVRVAADVTEFKQRLRQILPN 124

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
             I V   +D +VL G V +    QRA++L+E +            + ++V NL+++ G 
Sbjct: 125 EKIEVRTANDGIVLSGTVSSSARLQRALDLAERY------------APERVSNLMSVGGV 172

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG----------SSSGPSKSFAADFGGKFVS--- 240
            QV LKV  AE++R + K +       G          ++   S + A    G   +   
Sbjct: 173 QQVMLKVRFAEMQRSVSKSLSASLGFNGGTGNGRTGGYNTLNTSGALANSLAGNIPAANE 232

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             G F             +L ALE+   +RTLAEP L+A+SGQ A F +GG++    V+ 
Sbjct: 233 NTGAFLFGFNAGSVQVSLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPVP-VAQ 291

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKA 356
             G  ++    +G+ L+F P V+    I L +   VS         ++   + ++  R+ 
Sbjct: 292 EGGVITIEFKPFGIELNFIPRVIDGDLINLELNAAVSAIDPTNSLELSGLTIDAFSRRET 351

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            TTVE+  G +  +AGL++D+       +P L  +P+LGALFR++ + RE+TE+ I  + 
Sbjct: 352 STTVEMRDGESFAIAGLIRDEFLDNSSQLPWLGDVPVLGALFRSADYQREQTELVIIVSA 411

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            LV P     L+ P D  +   +   F F R ++      A+EV  Q++ G+ G++ 
Sbjct: 412 HLVTPTRGEALTLPTDRVAPPSEKDLFLFGRTSRNRAGP-AAEVAKQDFNGSYGYVL 467


>gi|254501806|ref|ZP_05113957.1| Putative phospholipid-binding domain family [Labrenzia alexandrii
           DFL-11]
 gi|222437877|gb|EEE44556.1| Putative phospholipid-binding domain family [Labrenzia alexandrii
           DFL-11]
          Length = 483

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 169/482 (35%), Positives = 275/482 (57%), Gaps = 22/482 (4%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           +R     F    ++    S  + A     +EA  + I+++  E    + +++G+ + +++
Sbjct: 16  IRRSGLRFCAFAAVMGLVSFMAPASWS--QEAFPSQIHVAAGERATDRILNVGIGRSVVI 73

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +  D  DVLVS+P  AD V+ +PR +++ G   GQA ++L G  G+++ + DI +E+D 
Sbjct: 74  NLAEDAADVLVSNPQIADAVLRTPRRIFVLGNTAGQARLVLFGRSGRELASFDIRVEKDT 133

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           + +   +RR I  ++++ E ++  VVL G  ++  ++Q+A +++  F      +      
Sbjct: 134 SDITRIIRRLIPGTSVQAESINGKVVLSGTAKSTLEAQQAADIAAKFQGDETGSA----- 188

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
              ++NL+ ++G DQV LKVT+AEV R I+KQ+G         +G    F ++F    V+
Sbjct: 189 ---IVNLIAVSGSDQVHLKVTVAEVERSIIKQLGVSFQAN-LGAGNFFPFGSNFPNFNVN 244

Query: 241 EG----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                     V       S    + AL+R   IRTLAEPTLTA SG++ASF +GG+    
Sbjct: 245 PSIVNQATGGVTFSSGTSSLTAQVEALQRDGVIRTLAEPTLTATSGENASFLAGGEFPIP 304

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYR 352
            ++      SV    +GV L FTP VL+ GRI LR++TEVSE      +      + + +
Sbjct: 305 -IAQEDNQISVEFKKFGVGLDFTPIVLTGGRISLRVKTEVSELSNEGAVSAGGITISALK 363

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           VR+A++T+ELPSGGT+V+AGLL++  QQ  EG+P L +IP+LGALF++  F +++TE+ +
Sbjct: 364 VRRAESTMELPSGGTLVMAGLLEESYQQAVEGVPGLMQIPVLGALFKSRDFLKQQTELAV 423

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             TP++VKPVA + + RPD +     DA+A F NR+NKI+ P  A E     Y G +GFI
Sbjct: 424 FVTPYVVKPVAAQKMVRPDKNLFAPSDAEAIFLNRLNKIFNP--AGEQAQGTYHGQVGFI 481

Query: 473 YK 474
           YK
Sbjct: 482 YK 483


>gi|85713505|ref|ZP_01044495.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A]
 gi|85699409|gb|EAQ37276.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A]
          Length = 477

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/489 (34%), Positives = 269/489 (55%), Gaps = 44/489 (8%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           +  F+ NP++A   P+  ++  V   +       + +S+G+ K +++ +P DV+DVLV+D
Sbjct: 1   MGAFTLNPALA---PVFASDYRVSAATTGAKMHTQSLSLGIGKSVVVDLPRDVKDVLVAD 57

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           P  A+ VV S +  Y+ G  VGQ N+I     G+Q+   DI + RD+  L   L++ + +
Sbjct: 58  PKIANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQQISAYDIAVTRDLNGLRAALKQLLPN 117

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           + I+V+ + D V+L G V +  ++Q+A +L+                 +KV+N + + G 
Sbjct: 118 AAIKVDGLGDGVMLSGWVSSPIEAQQAGDLAARLAD----------GVQKVVNNIAVRGR 167

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----GKFVSEGGDFSVKG 249
           DQV LKVT+AEV R I+KQ+G   S   +      +F+        G+ +  G + S   
Sbjct: 168 DQVMLKVTVAEVARTIIKQMGIDLSANMNYGTAVVNFSNSNPFTALGRPLVSGNNLSGSA 227

Query: 250 VLDRF------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            L               S +  L A+E A  IRTLAEP LTAISG+SA+F SGG+     
Sbjct: 228 GLTNLLPGQAGYPGVVPSVQATLRAMESAGVIRTLAEPNLTAISGESATFISGGEFPIPA 287

Query: 298 VSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--------- 343
             S   A     T +    +G+ L+FTP VL+ GRI LR+ TEVSE              
Sbjct: 288 GYSCDPATRVCLTQIRFKKFGISLNFTPVVLTEGRISLRVMTEVSELSTENAMTITQTIG 347

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           N+  +PS R R+A+TT+E+PSGG++ +AGL+++  +Q   G+P L+++P+LGALFR+  +
Sbjct: 348 NSLTVPSIRTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGLTQLPVLGALFRSRDY 407

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
              +TE+ +  TP++V+ VA +DLSRPDD ++   D ++     +N+IYG     E   +
Sbjct: 408 VNGQTELVVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSINRIYGAPGRVE-PAR 466

Query: 464 NYKGAIGFI 472
           +Y+G  GFI
Sbjct: 467 HYRGTYGFI 475


>gi|126729098|ref|ZP_01744912.1| bacterial type II/III secretion system protein [Sagittula stellata
           E-37]
 gi|126710088|gb|EBA09140.1| bacterial type II/III secretion system protein [Sagittula stellata
           E-37]
          Length = 473

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/488 (26%), Positives = 228/488 (46%), Gaps = 38/488 (7%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           TF   +   L      +A + P   A++    I  V  G    +S+ +N+ ++++     
Sbjct: 2   TFDGYLKAALCGLALGIATMSPPAHADS----IRVVRTGTESVLSVPMNRAVVVESDTPF 57

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            ++ +++P+ AD+   S RT+Y+ GK  G   + ++   G+ + N+D+ +  D+   +  
Sbjct: 58  AELSIANPSIADISSLSDRTIYVLGKQPGTTTLTILDPQGQLITNVDVRVAADVTEFKER 117

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L + + +  I V   +D +VL G V +I   +RA++L++ +            +  +V N
Sbjct: 118 LTQILPEERIEVRTANDGIVLSGTVSSIARMERALDLAQRY------------APDRVSN 165

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-------- 238
           L+ + G  QV LKV  AE+RR + K +    +  GS+            G          
Sbjct: 166 LMVVGGIQQVMLKVRFAEMRRSVSKALRASLATGGSTGDLGVELGTGNAGTLAERDLVAD 225

Query: 239 ------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                 +   G               +L ALE    +RTLAEP LTA+SGQ ASF +GG+
Sbjct: 226 KLFPRRLGTEGAVLFGFNAGGLEVGILLEALESKGMVRTLAEPNLTALSGQEASFLAGGE 285

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDM 348
           +   T      + +V    +GV L F P V+    I L ++  VS       I      +
Sbjct: 286 YPVPTAQGDN-SVTVEFKPFGVELAFVPRVIDGDLINLELEAAVSSVDSANGITFQDVTI 344

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
             +  R+A TTVEL  G +  +AGLL+++   L   +P +  +PILGALFR++ + RE++
Sbjct: 345 AGFARREAKTTVELRDGESFAIAGLLQENFADLNGQVPWIGDVPILGALFRSTEYQREQS 404

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN---KIYGPKEASEVEGQNY 465
           E+ I  TP LV P     L+ P D  ++  + + F   +++   +      A+EV  Q++
Sbjct: 405 ELVIIVTPHLVTPTRGEALALPTDRVTLPSERQLFLNGKIDGNGRRPRSGAAAEVANQDF 464

Query: 466 KGAIGFIY 473
            G+ G++ 
Sbjct: 465 NGSYGYVM 472


>gi|163742213|ref|ZP_02149601.1| bacterial type II/III secretion system protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384543|gb|EDQ08924.1| bacterial type II/III secretion system protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 484

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/474 (26%), Positives = 233/474 (49%), Gaps = 32/474 (6%)

Query: 18  SSNPSVAKLPPIKEANAAVIN-ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
           ++  +   L     A+AA  N +  V+ G    + + +N+ ++++  V   ++ +++P+ 
Sbjct: 24  AAALTGLSLVCFPVADAAWGNGLRVVKKGTAANLEVPMNRAVVVESDVPFSELSIANPSI 83

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  D++  +  LR+ +    I
Sbjct: 84  ADISSLSDRTIYVLGKSPGLTTLTLLDASGRLITNVDVRVAADVSEFKERLRQILPGEKI 143

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            V   +D +VL G+V +    QRA++L+E +            + ++V NL+++ G  QV
Sbjct: 144 EVRTANDGIVLSGVVSSSARLQRALDLAERY------------APERVSNLMSVGGVQQV 191

Query: 197 TLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPSKSFAADFGGKFVS---EGG 243
            LKV  AE++R + K +     +            S+     +      G   +     G
Sbjct: 192 MLKVRFAEMQRTVSKSLSASLGVKGGNSVGVNGGTSTLNTQGALTNSLSGNIPAANDNTG 251

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F        F    +L ALE+   +RTLAEP L+A+SGQ A F +GG++    V+   G
Sbjct: 252 AFVFGFNAGAFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDG 310

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTT 359
             ++    +G+ L+F P V+    I L ++  VS         +N   + ++  R++ TT
Sbjct: 311 VITIEFKPFGIELNFIPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRESVTT 370

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VE+  G +  +AGL++D+ +     +P +  +P+LG+LFR++ + R +TE+ I  +  LV
Sbjct: 371 VEMRDGESFAIAGLIRDEFRDNSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLV 430

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            P     LS P D      +++ F   RV K      ASEV  Q++ G+ G++ 
Sbjct: 431 TPTRGEALSLPTDRIRPPSESELFLMGRVAKGQ-KGPASEVAKQDFNGSYGYVM 483


>gi|86137993|ref|ZP_01056569.1| bacterial type II/III secretion system protein [Roseobacter sp.
           MED193]
 gi|85825585|gb|EAQ45784.1| bacterial type II/III secretion system protein [Roseobacter sp.
           MED193]
          Length = 459

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/476 (27%), Positives = 233/476 (48%), Gaps = 32/476 (6%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           M+  L   +     +P +  AN     +  V+ G    + + +N+ ++++      ++ +
Sbjct: 1   MAAALTGLSLLSIAVPEMGLAN----GLRVVKRGTSVTLDVPMNRAVVVESDDPFAELSI 56

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           ++P  AD+   S RT+Y+ GK+ G   + L+   GK + N+++ +  D++  +  LR+ +
Sbjct: 57  ANPNIADISSLSDRTIYVLGKSPGLTTLTLLDASGKLITNVNVRVAADVSEFKERLRQIL 116

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
               I V   +D +VL G V +    QRA++L+E +            + ++V NL+++ 
Sbjct: 117 PGEQIEVRTANDGIVLSGNVSSAARLQRALDLAERY------------APERVSNLMSVG 164

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSE------- 241
           G  QV LKV  AE++R + K +    ++    G++SG +  +     G   +        
Sbjct: 165 GVQQVMLKVRFAEMQRSVSKALHSSVALGSQNGNASGETGQWLFGNNGLGNTPIEVKDGI 224

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  + +  +       +L ALE+   +RTLAEP L+A+SGQ A F +GG++    VS  
Sbjct: 225 AGALAFQFGVGSLQVGLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VSQD 283

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKAD 357
            G  +V    +G+ L+F P V+    I L ++  VS       +  N   + ++  R+  
Sbjct: 284 GGTVTVEFKPFGIELNFIPRVVDGDVINLELKAAVSAIDTSNTVTANGLSIAAFSRRETS 343

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTVEL  G +  +AGL++DD       IP +  +P+LGALFR++ + RE+TE+ I  +  
Sbjct: 344 TTVELRDGESFAVAGLVQDDFLDNTSQIPWIGDVPVLGALFRSADYQREQTELVIIVSAH 403

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           LV P     LS P D      +++ F   R         ASEV  Q++ G+ G++ 
Sbjct: 404 LVTPTRGEALSLPTDRIKPPSESELFLLGRTVHSQ-KGPASEVAKQDFNGSYGYVM 458


>gi|91977985|ref|YP_570644.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB5]
 gi|91684441|gb|ABE40743.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB5]
          Length = 480

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 162/484 (33%), Positives = 271/484 (55%), Gaps = 27/484 (5%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           +R L+ T   + ++   +  P++A +      +     + +  +   + +++G+ K +++
Sbjct: 10  IRTLKGTAMALSAVVALTLFPTLAPVQASDYRD-TPARMGNSGL-NARPLALGIGKSVVI 67

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P D++DVLV+DP  A+ VV S +  Y+ G  VGQ N++     G+Q+   DI + RD+
Sbjct: 68  DLPRDIKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTRDL 127

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             +   LR+ I +++I+VE + D V+L G V T  ++Q+A +L+      +         
Sbjct: 128 NGIRTALRQSIPNADIQVEGLGDGVMLIGSVATPIEAQQAADLAARLAGDAS-------- 179

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
             KV+N + + G DQV LK+T+AEV+RDI+KQ+G   + + +       F+      F  
Sbjct: 180 --KVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLTASMNYGTSVVKFSNT--NPFTQ 235

Query: 241 EGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
            GG       L        S    L A+E A  +RTLAEP LTAISG+ ASF +GG+   
Sbjct: 236 SGGPLVANNALTTSFGSGPSVSATLRAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPV 295

Query: 296 K---TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDM 348
               T ++S    SVT   +GV+L+FTP VL+ GRI L++ TEVSE        +    +
Sbjct: 296 PSGVTCTNSLCTPSVTFKKFGVLLNFTPVVLTEGRISLKVSTEVSEVSSDNSIVIGGLSV 355

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS + R+ ++TVE+PSGG++ +AGL+++  +Q   G+P ++++PILG LFR+  +   +T
Sbjct: 356 PSIKTRRIESTVEIPSGGSLAMAGLIQEQTKQAINGLPGMTQLPILGTLFRSRDYINRQT 415

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
           E+ +  TP++V+ VA +DLSRPDD ++   D ++     +N+IYG    +    Q Y+G 
Sbjct: 416 ELMVMVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGNINRIYGVPGRTG-PAQTYRGR 474

Query: 469 IGFI 472
            GFI
Sbjct: 475 FGFI 478


>gi|260461949|ref|ZP_05810194.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259032196|gb|EEW33462.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 505

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 191/501 (38%), Positives = 298/501 (59%), Gaps = 45/501 (8%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            + ++   +  +    +      +         +++ +GLNK +++ +P D  D+LV++P
Sbjct: 9   AIVAAAFGLLLVGTNVQGVVEAKSTQVTATTASQRVKLGLNKSVVIDLPSDAYDILVANP 68

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
           + AD V  + R +YLFGK VG+ N+ + G +G+Q+ +LD+ +ERD+A LE  +RRFI  S
Sbjct: 69  SVADAVTRTARRIYLFGKAVGETNIFVFGPNGEQIASLDLAVERDVAGLEDYIRRFIPTS 128

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--SQSGRNQYANSS------------ 180
           +I+VE+++D VVL G V T  DS+RAV+L+  F+   ++   QY+ ++            
Sbjct: 129 DIKVELLNDNVVLTGTVDTPLDSKRAVDLATIFVSGGEATTGQYSQTAAGGSAQSGVDIN 188

Query: 181 -------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
                  + K++NLL I G+DQVTLKVT+AEV R ++KQ+G     +G S+G S    +D
Sbjct: 189 NPDQERRTSKIVNLLQIIGDDQVTLKVTVAEVSRSVMKQLGVNMVGSGGSNGISYGALSD 248

Query: 234 FGGKFVSEGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
               F   G   S  G  ++    +  ++A+E++  ++TLAEPTLTA+SG+ A+F  GG+
Sbjct: 249 ---PFTGLGKPLSNAGFSINASGLQAYINAMEQSGVMKTLAEPTLTAVSGEKATFKVGGE 305

Query: 293 HLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-- 341
           +   T  S+  +          SV   +YG+ L F P VLSPGRI L+++T VSEP    
Sbjct: 306 YNMVTGVSANVSADNQTGLKTYSVDKIEYGIGLEFQPVVLSPGRISLKVRTSVSEPTTEG 365

Query: 342 --------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                        +  S R R ADTTVELPSGG++++AGL++DD++Q   G+P L+KIP+
Sbjct: 366 SVSSSTSNTSVGMNALSLRKRLADTTVELPSGGSMMIAGLVRDDVRQAVNGLPGLTKIPV 425

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LGALFR+  F R ETE+ I  TP+LVKPVA  DL++PDD+++   D  A F  +VN++YG
Sbjct: 426 LGALFRSRDFVRNETELVIIITPYLVKPVARNDLAKPDDNFNAASDGAAMFLGKVNRVYG 485

Query: 454 PKEASEVEGQNYKGAIGFIYK 474
             +  +  G+ Y G +G+IYK
Sbjct: 486 TMQTDKPNGR-YHGVVGYIYK 505


>gi|316933039|ref|YP_004108021.1| type II and III secretion system protein [Rhodopseudomonas
           palustris DX-1]
 gi|315600753|gb|ADU43288.1| type II and III secretion system protein [Rhodopseudomonas
           palustris DX-1]
          Length = 478

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 156/483 (32%), Positives = 268/483 (55%), Gaps = 27/483 (5%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG--KGKKISIGLNKVIILQ 61
           L+ T     +    S+   +  +P    A+A+    +    G    + +++G+ K +++ 
Sbjct: 7   LRSTRSLRGTAIALSTAAVLTLIPAWTAAHASDYRAAPAASGGLNAQSVALGIGKSMVID 66

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +P D++DVLV+DP  A+ V+ S +  Y+ G  VGQ N++     G+Q+   DI + RD+ 
Sbjct: 67  LPRDIKDVLVADPKIANAVIRSAQRAYIIGAAVGQTNIVFFDSTGRQIAAYDIAVTRDLN 126

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +   L++ +  ++I+VE + + V+L+G V +  ++Q+A +L+   +             
Sbjct: 127 GIRTALKQTLPTADIQVEGLGEGVMLNGSVASPIEAQQAFDLAARLVGDD---------- 176

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           KKV+N + + G DQV LK+T+AEV+RDI+KQ+G   S   +      +F  +    F   
Sbjct: 177 KKVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLSANMAYGTAVVNF--NNTNPFTQS 234

Query: 242 GGDFSVKGVLDR-----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           G        L        S    L A+E A  +RTLAEP LTAISG+ A+F +GG+    
Sbjct: 235 GSALVPNNALTTKFGSLPSVTATLRAMESAGVVRTLAEPNLTAISGEPATFLAGGEFPVP 294

Query: 297 TVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMP 349
           +  + T      SV    +G++L+FTP V++ GRI L++ TEVSE        +N+  +P
Sbjct: 295 SGVTCTNGVCTPSVVFKKFGILLNFTPVVMTAGRISLKVMTEVSEVSSDNAVVINSLSVP 354

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           S + R+ ++T+E+PSGG++ +AGL+++  +Q   G+P  +++PILG LFR+  +   +TE
Sbjct: 355 SIKTRRVESTLEIPSGGSLAMAGLIQEQTKQAINGMPGAAQLPILGTLFRSRDYINRQTE 414

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
           + +  TP++V+ VA +DLSRPDD ++   D ++     +NK+YG    SE   + Y+G  
Sbjct: 415 LMVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSLNKLYGAPGRSE-PARTYRGRF 473

Query: 470 GFI 472
           GFI
Sbjct: 474 GFI 476


>gi|90419764|ref|ZP_01227673.1| Flp pilus assembly protein, secretin CpaC (type II and type III
           secretion system) [Aurantimonas manganoxydans SI85-9A1]
 gi|90335805|gb|EAS49553.1| Flp pilus assembly protein, secretin CpaC (type II and type III
           secretion system) [Aurantimonas manganoxydans SI85-9A1]
          Length = 540

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 192/535 (35%), Positives = 283/535 (52%), Gaps = 70/535 (13%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           +R   R    +M+    +  P    LP   +A   V+N+        + I++GLNK  ++
Sbjct: 15  LRARLRKLVVVMAAASTALAPLATTLP--AQAEQTVVNVRQ----GSQSINLGLNKTKVI 68

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +  D  D+LV++P  AD V    R +Y+FGK +GQ N+++     +Q+ ++D+ IERDI
Sbjct: 69  VLEADAHDILVANPAVADAVTRDARRIYIFGKQIGQTNIVVFDRQNRQIASIDLKIERDI 128

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--SQSGRNQYAN 178
             LE T+R+++  S ++VEM++D VVL+G V+T QD+ +   L+  F+   +    QY  
Sbjct: 129 NGLEATIRKYVPSSVVQVEMLNDNVVLNGTVQTPQDAAKVERLARLFVTGGEGTTGQYIQ 188

Query: 179 SSS---------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
            ++                      +++NLL I GEDQVTLKVT+AEV+R ++KQ+G   
Sbjct: 189 QATASGGAGGGDGDVGFAQEDRRQSQIVNLLQIQGEDQVTLKVTVAEVQRSVVKQLGINS 248

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           +     +          G    S     +  G +  F     L+A+E+A  +RTLAEP+L
Sbjct: 249 TAGKGVTYGQTDSPFALGKALSSSM--LASAGSIGGFDITAQLNAMEQAGVMRTLAEPSL 306

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV-----------------------------T 308
           TAISG+ ASF  GG+       S    T                               T
Sbjct: 307 TAISGEKASFKVGGEFTVPDAQSYDPGTPARREFQGYDGSGQAIYDTIPAEPPTRSIDKT 366

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTT 359
             +YG+ L FTP VLSPGRI L+I+T VSEP   +                 R R ADTT
Sbjct: 367 RVEYGIGLDFTPVVLSPGRISLKIRTAVSEPTFEMPFNISGGKDGGVGTVGIRKRLADTT 426

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VELPSGG++V+AGL++D+++Q+  G P LSKIP+LG LFR+  F R ETE+ I  TP+LV
Sbjct: 427 VELPSGGSLVIAGLVRDEVRQVMSGFPGLSKIPVLGTLFRSRDFQRYETELVIIVTPYLV 486

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +PV  + L+RPDD +++  D  A F  RVN++YG  E     G+ Y G +GFIYK
Sbjct: 487 RPVPRQALARPDDGFALSSDGAANFLGRVNRVYGHMETKLPPGR-YHGVVGFIYK 540


>gi|75674499|ref|YP_316920.1| type II and III secretion system protein [Nitrobacter winogradskyi
           Nb-255]
 gi|74419369|gb|ABA03568.1| type II and III secretion system protein [Nitrobacter winogradskyi
           Nb-255]
          Length = 493

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 160/485 (32%), Positives = 263/485 (54%), Gaps = 35/485 (7%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEI-GKGKKISIGLNKVIILQVPVDVQDVL 70
           ++     +    A L P+  ++  V   +        + +S+G+ K +++ +P DV+DVL
Sbjct: 18  LAFAAIGAFTLDAALTPVFASDYRVSGAATAGANMHAQSLSLGIGKSVVVDLPRDVKDVL 77

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V+DP  A+ VV S +  Y+ G  VGQ N+I     G+Q+   DI + RD+  L   L++ 
Sbjct: 78  VADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQQISAYDIAVTRDLNGLRTALKQL 137

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           + ++ I+V+ + D V+L G V    ++Q+A +L+      +          +KV+N + +
Sbjct: 138 LPNAAIKVDGLGDGVMLSGWVSNPIEAQQAGDLAARLTDGA----------QKVVNNIAV 187

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS---------ITGSSSGPSKSFAADFGGKFVSE 241
            G DQV LKVT+AEV R ++KQ+G   S         +  +++ P  +          + 
Sbjct: 188 RGRDQVMLKVTVAEVARTVIKQMGIDLSASMNYGTAVVNFTNANPFTALGRPLTNNSAAA 247

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
               ++ G     +    L A+E A  IRTLAEP LTAISG+SA+F SGG+       S 
Sbjct: 248 SFGSTMVGGAPVPAVTATLRAMESAGVIRTLAEPNLTAISGESATFISGGEFPIPAGFSC 307

Query: 302 TGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---------NAGD 347
             A     T +    +G+ L+FTP VL+ GRI LR+ TEVSE              N+  
Sbjct: 308 DPATRVCLTQIRFKKFGISLNFTPVVLTEGRISLRVMTEVSELSNENSMTLNQSVGNSLT 367

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +PS R R+A+TT+E+PSGG++ +AGL+    +Q+  G+P ++++P+LGALFR+  +   +
Sbjct: 368 VPSIRTRRAETTLEIPSGGSMAMAGLIHQQTKQVINGLPGIAQVPVLGALFRSRDYVNGQ 427

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
           TE+ +  TP++V+ VA +DLSRPDD ++   D ++     +N+IYG     E   ++Y+G
Sbjct: 428 TELMVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSLNRIYGAPGRVE-PARHYRG 486

Query: 468 AIGFI 472
             GFI
Sbjct: 487 TYGFI 491


>gi|299132286|ref|ZP_07025481.1| type II and III secretion system protein [Afipia sp. 1NLS2]
 gi|298592423|gb|EFI52623.1| type II and III secretion system protein [Afipia sp. 1NLS2]
          Length = 490

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 165/482 (34%), Positives = 264/482 (54%), Gaps = 23/482 (4%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG--KGKKISIGLNKVIILQVPVD 65
               +S    S+    + L P+   +  V + S         + + +G++K +++ +P D
Sbjct: 13  IARALSFVAVSALILNSSLSPVLATDYQVASASTASADSLNARSLRLGISKSLVVDLPRD 72

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           V+DVLV+DP  A+ VV S R  Y+ G  VGQ N+I    DG+QM   D+ + RD+  +  
Sbjct: 73  VKDVLVADPKIANAVVRSSRRAYIIGAAVGQTNIIFFDADGQQMAAYDVAVTRDLNGIRT 132

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
            + + +  S+I+VE + D VVL G      ++Q+A EL+   +    +      ++  V+
Sbjct: 133 AIHQALPQSDIQVEGLGDGVVLTGSAANQAEAQQAYELAARLIGGPSK------ANDLVV 186

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--AADFGGKFVSEGG 243
           N + + G DQV LKVT+AEV+R+I+KQ+G   S   S       F  A  F     +   
Sbjct: 187 NNITVRGRDQVMLKVTVAEVQRNIVKQLGVDLSGKFSYGTAVVDFNNANQFSALGHALAP 246

Query: 244 DFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---- 298
           D ++        S +  L A+E A  +RTLAEP LTAISG+SA+F +GG+    T     
Sbjct: 247 DNAISTSFGSAPSVKATLRAMESAGVVRTLAEPNLTAISGESATFIAGGEFPIPTGITCQ 306

Query: 299 ----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPS 350
               +SS    S+    +G+ L+FTP VL+ GRI LR+ TEVSE      + V+   +PS
Sbjct: 307 TAAGTSSNCQPSIAFKKFGISLNFTPVVLTEGRISLRVMTEVSEISNDNSLTVSGMTIPS 366

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            + R+A+TT+E+PSGG++ +AGL+++  +Q   G+P L+++P+LG LFR+  F   +TE+
Sbjct: 367 IKTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGLAQLPVLGTLFRSRDFINNQTEL 426

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
            +  TP++V+ VA +DLSRPDD ++   D +      + +IYG          +Y+G  G
Sbjct: 427 MVLVTPYVVRAVAQKDLSRPDDGFASASDPQTVLLGNITRIYGVPRREGQASSSYRGKYG 486

Query: 471 FI 472
           FI
Sbjct: 487 FI 488


>gi|254463467|ref|ZP_05076883.1| bacterial type II/III secretion system protein [Rhodobacterales
           bacterium HTCC2083]
 gi|206680056|gb|EDZ44543.1| bacterial type II/III secretion system protein [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 474

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 142/491 (28%), Positives = 239/491 (48%), Gaps = 42/491 (8%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
           +   T+ + FL  +    A + P   A+A  + I  V  G    + I +N+ ++++  V 
Sbjct: 2   KKLNTLRAAFLGCAVLFTASVAP---AHADTLRI--VRSGSSSTLPIPMNRAVVVESDVP 56

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
             ++ +++P+ AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  D++  + 
Sbjct: 57  FAELSIANPSIADISTLSDRTVYVLGKSPGLTTLTLLDDAGRLITNVDVRVSADVSEFKE 116

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
            LR+ +    I V   +D +VL G V +     RA++L++ +            + ++V 
Sbjct: 117 RLRQILPGEKIEVRTANDGIVLSGTVSSAGKVDRAMDLAQRY------------APERVT 164

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILK-----------QIGFQHSITGSSSGPSKSFAADF 234
           NLL+++G  QV LKV  AE++R + K            +G   S+ G ++  +   A+  
Sbjct: 165 NLLSVSGVQQVMLKVRFAEMQRSVSKSLSSSLALGGSALGGNLSVRGGTNTLASGAASSA 224

Query: 235 GGKFVSEGGDFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                +   + +    L  F+        +L ALE    +RTLAEP LTA+SGQ A F +
Sbjct: 225 AIAGTAPANNANNGATLFGFNAGGLEVGILLEALESKGMVRTLAEPNLTALSGQEAKFLA 284

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNA 345
           GG++     SSS     +    +GV L F P VL    I L +  EVS          + 
Sbjct: 285 GGEYPIPVQSSS--GVQIQFKPFGVQLAFIPRVLDDKVINLELNAEVSSLDAANGIVSDG 342

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +   +VR+  TTVE+  G +  +AGLL+DD   L   +P L  IP+LGALFR++ + R
Sbjct: 343 FAISGLKVRRTSTTVEMRDGESFAIAGLLQDDFTDLSGQVPWLGDIPVLGALFRSADYKR 402

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE---ASEVEG 462
           E++E+ I  TP LV P     L+ P D  S   +   F F RV       +   A+EV  
Sbjct: 403 EQSELVIIVTPHLVTPTRGEALALPTDRISPPTEKDLFLFGRVTGDSRRPKKGAAAEVAR 462

Query: 463 QNYKGAIGFIY 473
           Q++ G+ G++ 
Sbjct: 463 QDFTGSYGYVM 473


>gi|118589703|ref|ZP_01547108.1| pilus assembly protein [Stappia aggregata IAM 12614]
 gi|118437789|gb|EAV44425.1| pilus assembly protein [Stappia aggregata IAM 12614]
          Length = 483

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 173/473 (36%), Positives = 274/473 (57%), Gaps = 18/473 (3%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
               ++ L       A +   +    + ++I+  E   G+ +++G+ + +++ +  D  D
Sbjct: 22  LAATAVLLGGLMGVSAPVAQAEGNFPSQVHIAAGERATGRILNVGVGRSVVINLAEDAAD 81

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           VLVS+P  AD V+ +PR +++ G   GQ+ ++L    G+++ + D+ +E+D + +   +R
Sbjct: 82  VLVSNPEIADAVLRTPRRIFVIGNTAGQSRLVLFSRSGRELASFDVRVEKDTSDITRIIR 141

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
           + I  SNI  E ++ +VVL G  ++  ++Q+A +++  F   +        S+ +V+NL+
Sbjct: 142 KLIPGSNIFAESINGSVVLSGTAKSTLEAQQAADIAAKFQGAA--------SASEVVNLI 193

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
           ++AG+DQV LKVT+AEV R I+KQ+G Q   T      +   ++           + +V 
Sbjct: 194 SVAGKDQVHLKVTVAEVERSIIKQLGVQFQGTIGIGNFTPFMSSLPNFTVNPTIVNQAVG 253

Query: 249 G---VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           G        S    + AL+R   IRTLAEPTLTAISG++ASF +GG+     +S   G  
Sbjct: 254 GTQLTAGATSITAQVEALQREGVIRTLAEPTLTAISGENASFLAGGEFPIP-ISQRDGEL 312

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVE 361
           SV    +GV L FTP VLS GRI LR++TEVSE      +      + + +VR+A++T+E
Sbjct: 313 SVEFKKFGVGLDFTPVVLSEGRISLRVKTEVSELSNDGAVSAGGITISALKVRRAESTME 372

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           LPSGGT+V+AGLL++  QQ  EG+P L +IPILGALF++  F RE+TE+ +  TP++V+P
Sbjct: 373 LPSGGTLVMAGLLQESYQQAIEGVPGLMQIPILGALFKSRDFLREQTELAVFVTPYVVQP 432

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           VA+  L RPD +     DA   F NR+NKIY P  A       Y G +GFIYK
Sbjct: 433 VAVSKLQRPDKNLMAPSDAGTIFLNRLNKIYNPTGA--AAEGTYHGQVGFIYK 483


>gi|260431084|ref|ZP_05785055.1| bacterial type II/III secretion system protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414912|gb|EEX08171.1| bacterial type II/III secretion system protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 452

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 214/464 (46%), Gaps = 29/464 (6%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
           + P     A   N+  V+ G  + + + +N+ I+++      ++ +++   AD+   S R
Sbjct: 1   MSPAGYDAARAENLRVVKKGTAETLDVPMNRAIVVESETPFAELSIANAGIADISSLSDR 60

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
           T+Y+ GK  G   + L    G  + N+ + +  D+   +  LR+ + +  I V   +D +
Sbjct: 61  TIYVLGKAPGLTTLTLFDGAGNLIANVRVRVAPDVTEFKERLRQILPNERIEVRTANDGI 120

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           VL G V +     RA+EL+E +            + ++V NL+N+ G  QV LKV  AE+
Sbjct: 121 VLSGTVSSSAKLARALELAERY------------APERVSNLMNVGGVQQVMLKVRFAEM 168

Query: 206 RRDILKQIGFQHSITGS-------SSGPSKSFAADFGGKFV---SEGGDFSVKGVLDRFS 255
            R + K +       GS       S   S S +   G       S  G            
Sbjct: 169 NRSVAKSLSASLGFGGSDVTGGINSLNNSFSLSNALGNNIPVSQSNTGAILFGFGAGSTQ 228

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
              +L ALE     R+LAEP L+A+SGQ A+F +GG+     V    G  ++    +GV 
Sbjct: 229 VRLLLEALEAKGLARSLAEPNLSALSGQEATFLAGGEVPIP-VPQDDGVVAIEYKSFGVE 287

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           + F P V+    I L +   VS         +N   +PS+  R+  TTVEL  G +  +A
Sbjct: 288 IDFIPRVVDGDLINLEMAASVSAIDTSSDFTINGDSVPSFVTRQTSTTVELRDGESFAIA 347

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL++DD   L   IP L  +P+LGALFR++ + RE++E+ I  T  LV P     L+ P 
Sbjct: 348 GLIQDDFTDLSNQIPWLGDVPVLGALFRSAEYQREQSELVIIITAHLVSPTRGEALALPT 407

Query: 432 DHYSVEDDAKAFFFNRVNKIY--GPKEASEVEGQNYKGAIGFIY 473
           D      +   F   RV++    G   ASEV  Q++  + G++ 
Sbjct: 408 DRVKPPSEFDLFLNGRVSRTERAGNGAASEVANQDFGSSYGYVL 451


>gi|218680971|ref|ZP_03528868.1| putative pilus assembly protein [Rhizobium etli CIAT 894]
          Length = 434

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 215/438 (49%), Positives = 288/438 (65%), Gaps = 25/438 (5%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           +GLNK +++ +P D  D+LVSDPT AD V  + R +YLFGK VGQ N+ + G  G++++N
Sbjct: 2   LGLNKAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVN 61

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
           LDI IERD++ LE+ LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL   
Sbjct: 62  LDIEIERDVSGLEVNLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGG 121

Query: 172 GRNQYANSSS-----------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
                  ++S                  +V+NLL I GEDQVTLKVTIAEVRR++LKQ+G
Sbjct: 122 EATTRTETASGTGGDSSVALFAEGRQASQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLG 181

Query: 215 FQHSITGSSSGPSKSFA---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           F + ++ SS           AD     V  G     K  + ++   T L+ALE+A  ++T
Sbjct: 182 FDNLVSNSSGMTVAQLGSPSADSATSTVGGGLAALFKSTIGKYDISTYLNALEQAKVVKT 241

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEPTLTAISGQ+A+F SGGQ LY T + S G  +VT  +YG+ L F P VLS GRI L+
Sbjct: 242 LAEPTLTAISGQAATFNSGGQQLYST-TDSDGNVTVTPFNYGINLAFKPVVLSSGRISLQ 300

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           I+T VSEPV G       +Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKI
Sbjct: 301 IKTNVSEPVAGSGNA---TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKI 357

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P+LG LFR   F R+ETE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+
Sbjct: 358 PLLGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKV 417

Query: 452 YGPKEASEVEGQNYKGAI 469
           YG +EA   + Q + G+I
Sbjct: 418 YGRREAPVADAQ-FHGSI 434


>gi|13474660|ref|NP_106229.1| exporter protein, cpaC [Mesorhizobium loti MAFF303099]
 gi|14025415|dbj|BAB52015.1| exporter protein; CpaC [Mesorhizobium loti MAFF303099]
          Length = 471

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 186/473 (39%), Positives = 291/473 (61%), Gaps = 45/473 (9%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
                +++ +GLNK +++ +P D  D+LV++PT AD V  + R +YLFGK+VG+ N+ + 
Sbjct: 3   ATTATQRVKLGLNKSVVIDLPSDAYDILVANPTVADAVTRTARRIYLFGKSVGETNIFVF 62

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
           G +G+Q+ +LD+ +ERD+A LE  +RRF+  S+++VE+++D VVL G V T  D++RAV+
Sbjct: 63  GPNGEQIASLDLAVERDVAGLEDYIRRFLPTSDVKVELLNDNVVLTGTVDTPLDAKRAVD 122

Query: 163 LSETFL--SQSGRNQYANSSS-------------------KKVMNLLNIAGEDQVTLKVT 201
           L+  F+   ++   QY+ +++                    K++NLL I G+DQVTLKVT
Sbjct: 123 LATIFVSGGEATTGQYSQTAAGGSAQGGVDINNPDQERRVSKIVNLLQIIGDDQVTLKVT 182

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFSFETVL 260
           +AEV R ++KQ+G      G S+G S    +D    F   G   S  G  +   +    +
Sbjct: 183 VAEVSRSVMKQLGVNMVGNGGSNGISYGALSD---NFTGLGKQLSHSGFNIGNSALMAYI 239

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHD 311
           +A+E++  ++TLAEPTLTA+SG+ A+F  GG++   T  S   ++         ++   +
Sbjct: 240 NAMEQSGVMKTLAEPTLTAVSGEKATFKVGGEYNLLTGVSQNVSSDNQTGLTTYTINKIE 299

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVE 361
           YG+ L F P VLSPGRI L+++T VSEP           +     +M S R R ADTTVE
Sbjct: 300 YGIGLEFQPVVLSPGRISLKVRTSVSEPTTEGSVALSNGVTSPGANMLSLRKRLADTTVE 359

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           LPSGG++++AGL++DD++Q   G+P L+KIP+LGALFR+  F R E+E+ I  TP+L KP
Sbjct: 360 LPSGGSMMIAGLVRDDVRQAVNGLPGLTKIPVLGALFRSRDFVRNESELVIIITPYLAKP 419

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           VA  DL++PDD+++   D  A F  +VN++YG  +  +  G+ Y G +G+IYK
Sbjct: 420 VARNDLAKPDDNFNPASDGAANFLGKVNRVYGTMQTDKPNGR-YHGVVGYIYK 471


>gi|90425197|ref|YP_533567.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB18]
 gi|90107211|gb|ABD89248.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB18]
          Length = 492

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 159/495 (32%), Positives = 266/495 (53%), Gaps = 35/495 (7%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           R ++      +     ++      L P   A+   +  +       + +++G++K +++ 
Sbjct: 7   RPMRSPLARALWFSAAAALTINPALAPALAADYRPMAAAADGQLNARFLALGVSKSVVID 66

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +P D++DVLV+DP  A+ VV S +  Y+ G  +GQ N++     G Q+   DI + RD+ 
Sbjct: 67  LPRDIKDVLVADPKIANAVVRSAQRAYIIGAAIGQTNIVFFDAAGLQIAAYDIAVTRDLN 126

Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
            +   +++ +  ++IRVE V   +V+L G V +  ++Q+A +L+   +            
Sbjct: 127 GIRAAMKQTLPGADIRVEGVGVKSVMLTGSVSSPIEAQQAGDLAARLVD----------G 176

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FG 235
              V+N + + G DQV LKVT+AEV+RDI+KQ+G   +   +      +F        +G
Sbjct: 177 PDNVVNSIAVRGRDQVMLKVTVAEVQRDIVKQLGVDLTARMNYGTAVVNFNNSNPFTAYG 236

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              VS     +  G     S    L A+E A  +RTLAEP LTAISG+SA+F +GG+   
Sbjct: 237 SNLVSGNATTASFGGGTTPSVTATLRAMESAGVVRTLAEPNLTAISGESATFVAGGEFPV 296

Query: 296 KTVSSST-----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------- 339
               S         T ++   +G+ L+FTP V+S GRI LR+ TEVSE            
Sbjct: 297 PAGYSCDPVTHVCTTQISFKKFGISLNFTPVVMSEGRISLRVMTEVSEISTDNSITLSQA 356

Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 N+  +PS + R+A+TT+E+PSGG++ +AGL+++  +Q   G+P L+++P+LGAL
Sbjct: 357 VSTTTTNSITVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAMNGLPGLAQLPVLGAL 416

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           FR+  +    TE+ +  TP++V+ VA +DLSRPDD ++   D +A     +N+IYG +  
Sbjct: 417 FRSRDYVNRNTELLVLVTPYVVRAVAQKDLSRPDDGFAAASDPQADLIGNINRIYGVRGR 476

Query: 458 SEVEGQNYKGAIGFI 472
           +E   +NY+G  GFI
Sbjct: 477 TE-PAKNYRGTYGFI 490


>gi|319785608|ref|YP_004145084.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317171496|gb|ADV15034.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 506

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 187/478 (39%), Positives = 289/478 (60%), Gaps = 45/478 (9%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           N         +++ +GLNK +++ +P D  D+LV++P  AD V  + R +YLFGK VG+ 
Sbjct: 33  NAQVTASTATQRVKLGLNKSVVIDLPSDAYDILVANPAVADAVTRTARRIYLFGKAVGET 92

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           N+ + G +G+Q+++LD+ +ERD+A LE  +RRF+  S ++VE+++D VVL G V T  D+
Sbjct: 93  NIFVFGPNGEQIVSLDLAVERDVAGLEDYIRRFLPTSAVKVELLNDNVVLTGTVDTPLDA 152

Query: 158 QRAVELSETFL--SQSGRNQYANSS-------------------SKKVMNLLNIAGEDQV 196
           +RA +L+  F+   ++   QY+ ++                   + +++NL+ I G+DQV
Sbjct: 153 KRAEQLANMFVSGGEATTGQYSQTAAGGSAQSGVDINNPDQERRTSQIVNLIQIIGDDQV 212

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFS 255
           TLKVT+AEV R ++KQ+G     +G S+G S    +D    F   G   S  G  +    
Sbjct: 213 TLKVTVAEVSRSVMKQLGVNMVGSGGSNGISYGAISD---NFTGLGKQLSNSGFQIGASG 269

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------S 306
            +  ++A+E++  ++TLAEPTLTA+SG+ A+F  GG++   T  S+  +          S
Sbjct: 270 LQAYVNAMEQSGVMKTLAEPTLTAVSGEKATFKVGGEYNMVTGVSANVSQDNQTGLKTYS 329

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKA 356
           V   +YG+ L F P VLSPGRI L+++T VSEP           +     +  S R R A
Sbjct: 330 VEKIEYGIGLEFQPVVLSPGRISLKVRTSVSEPTTEGSVSFSSGVTSPGMNALSLRKRLA 389

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DTTVELPSGG++++AGL++DD++Q   G+P L+KIP+LGALFR+  F R ETE+ I  TP
Sbjct: 390 DTTVELPSGGSMMIAGLVRDDVRQAVNGLPGLTKIPVLGALFRSRDFVRNETELVIIITP 449

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +LVKPVA  DL++PDD+++   D    F  RVN++YG  +  +  G+ Y G +GFIYK
Sbjct: 450 YLVKPVARNDLAKPDDNFNAASDGAGMFLGRVNRVYGTMQTDKPNGR-YHGVVGFIYK 506


>gi|126725970|ref|ZP_01741812.1| Outer membrane general secretion pathway protein, Secretin
           [Rhodobacterales bacterium HTCC2150]
 gi|126705174|gb|EBA04265.1| Outer membrane general secretion pathway protein, Secretin
           [Rhodobacterales bacterium HTCC2150]
          Length = 466

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 132/482 (27%), Positives = 233/482 (48%), Gaps = 42/482 (8%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
              + +V+  P    A      +  V+      +++ +N+ I+++      +V V++P+ 
Sbjct: 1   MGLSLAVSTAPLSGYAE----TLKVVKGSPSNSLNVPMNRAIVVETETSFGEVSVANPSI 56

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           AD+   S +T+Y+ GK  G+  + L+   G+ + N+D+ +  D+A  +  L++ +    I
Sbjct: 57  ADISTLSDKTIYVLGKAPGRTTLTLLDGTGRLISNVDVHVTPDVAEFKERLQQILPGEPI 116

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            V   +D +V+ G V +I    RA++L+  +            +  +V NL+++ G  QV
Sbjct: 117 EVRTANDGIVMSGTVSSIGKLDRALDLANRY------------APNRVSNLMSVGGTQQV 164

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------------- 241
            LK+  AE++R + K +    + +GS  G + +  A       S                
Sbjct: 165 MLKIRFAEMQRSVAKNLTGSLAFSGSLGGNAGATGASQTFSDGSNLANLYDGDSSTSATS 224

Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                G FS+        F+ +L ALE    +RTLAEP LTA+SGQ A F +GG++    
Sbjct: 225 SQDRDGLFSIGFSNGTIGFQVLLEALETKGVVRTLAEPNLTALSGQKADFLAGGEYPTPA 284

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR----- 352
           +    G+  +    +G+ + FTPTV+    I L+++T VS     ++A +   +      
Sbjct: 285 I-DDNGSPIIEYKPFGIEMEFTPTVVDGDLINLQLKTSVSSLDTSISAQNSAGFTVFGFK 343

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            RKA TTVE+  G +  +AGLL+DD       +P L  +PI+GALFR+S + R+++E+ +
Sbjct: 344 TRKASTTVEMRDGQSFAIAGLLQDDFTDQSGQVPWLGDVPIIGALFRSSEYERKQSELVV 403

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN-KIYGPKEASEVEGQNYKGAIGF 471
             TP LV P     L+ P D   +  + + F F  V  K      A EV  Q++ G+ G+
Sbjct: 404 IVTPHLVTPTRGEALALPTDRVQIPTERELFLFGNVAGKKKIKGAAGEVARQDFSGSYGY 463

Query: 472 IY 473
           + 
Sbjct: 464 VM 465


>gi|294676059|ref|YP_003576674.1| type II and III secretion system protein [Rhodobacter capsulatus SB
           1003]
 gi|294474879|gb|ADE84267.1| type II and III secretion system protein [Rhodobacter capsulatus SB
           1003]
          Length = 469

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 128/465 (27%), Positives = 221/465 (47%), Gaps = 41/465 (8%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
             A   +  V       +++ +N+ ++++      ++ +++P  ADV   S +T+Y+ GK
Sbjct: 23  PVAAETLRIVSGTGSTPLAVPMNRAVVVESDQPFSELSIANPGIADVTTLSDKTIYVLGK 82

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G+  + ++G DG  + N+++ +  DIA  +  L++ +   NI V   +D +VL G V 
Sbjct: 83  VPGRTTMTILGADGTLLSNVEVQVTPDIAEFKERLKQILPGENIEVRTANDGIVLSGTVS 142

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +     RA++L+  +              ++V NL+N+ G  QV LKV  AE++R + K 
Sbjct: 143 SSAKLDRALDLARRYAG------------ERVSNLMNVGGTQQVMLKVRFAEMQRSVSKN 190

Query: 213 IGFQHSITGSSSGPSKSFAADFG-GKFV------------------SEGGDFSVKGVLDR 253
           +    ++ G+  G +       G G F                   S  G   +   +  
Sbjct: 191 LASSLAMRGTVGGGNAQTGVITGTGNFTATDAVGNAFDKGTMPISASTQGALGLGFTVGN 250

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F  +L ALE    +RTLAEP LTA+SGQ A F +GG++    V       ++    +G
Sbjct: 251 MEFGVLLEALESKGMVRTLAEPNLTALSGQQAKFLAGGEYPIPVV--DDDGITIEYKPFG 308

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIV 369
           V + F P V+    I L I   VS     V    N   + +++ R+  TTVE+  G +  
Sbjct: 309 VEMSFIPRVVDGDLINLEIAAAVSAIDTSVTMTNNGTTVNAFKRRETSTTVEMRDGESFA 368

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           +AGLL+DD   L   IP L  +P+LG+LFR++ F R+++E+ I  TP LV P     L+ 
Sbjct: 369 IAGLLQDDFNDLNTQIPWLGDVPVLGSLFRSTAFERKQSELVIIITPHLVTPTHGEALAL 428

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           P D   +  +++ F   +         A EV  Q++ G+ G++ +
Sbjct: 429 PTDRIRLPSESELFLRGKTEG----GAAGEVARQDFSGSYGYVME 469


>gi|159043678|ref|YP_001532472.1| type II and III secretion system protein [Dinoroseobacter shibae
           DFL 12]
 gi|157911438|gb|ABV92871.1| type II and III secretion system protein [Dinoroseobacter shibae
           DFL 12]
          Length = 474

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 134/469 (28%), Positives = 230/469 (49%), Gaps = 41/469 (8%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89
             A A V+ + + +      + + +N+ ++++  +   ++ V++P  AD+   S R++Y+
Sbjct: 23  APAMAQVLRVQEGQ--ADSTLQVPMNRAVVVESDIPFAELSVANPGIADIATLSDRSIYV 80

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149
            GK+ G+  + L+G DG+ + N+D+ +  DIA  +  L + +   NI V   +D VVL G
Sbjct: 81  LGKSQGRTTMTLLGADGRLITNVDVQVTPDIAEFKERLEQILPGENIEVRTANDGVVLSG 140

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
              ++    RA++L++ +            +  +V NL++I G  QV LKV  AE++R +
Sbjct: 141 TASSVTAMDRALDLAQRY------------APDRVSNLMSIGGSQQVMLKVRFAEMQRSV 188

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------------------FSVKGVL 251
            KQ+     +T   SG   +F+   G   +++GG                     +   +
Sbjct: 189 SKQL--SGGLTAIYSGTDGAFSVGLGSGGLTDGGSIGGANSTEFTLNPEAAGTIGLGFNI 246

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
              S   +L ALE    +RTLAEP LT +SGQ ASF +GG++    V+   G  SV    
Sbjct: 247 GNVSLGILLEALESKGVVRTLAEPNLTTLSGQEASFLAGGEYPIP-VADGDGGISVEYKP 305

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGT 367
           +GV L F PTVL    I L +   VS          ++  +  +  R+  TTV+L  G +
Sbjct: 306 FGVELDFIPTVLDDDVINLELGAAVSALDSSASIITDSLTVQGFSRRETLTTVQLRDGDS 365

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
             +AGLL+DD +     +P L  IP+LGALFR++ + R ++E+ I  T  LV P     L
Sbjct: 366 FAIAGLLEDDFRDFAGQVPWLGDIPVLGALFRSADYARSQSELVIIVTAHLVSPTRGEAL 425

Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPK--EASEVEGQNYKGAIGFIYK 474
             P D   +  + + F    + +   P+   A EV  Q++ G+ G++ +
Sbjct: 426 VLPTDRVRIPSEREFFLNGNLVREDTPRRGAAGEVAQQDFSGSYGYVLE 474


>gi|170740621|ref|YP_001769276.1| type II and III secretion system protein [Methylobacterium sp.
           4-46]
 gi|168194895|gb|ACA16842.1| type II and III secretion system protein [Methylobacterium sp.
           4-46]
          Length = 501

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 154/454 (33%), Positives = 255/454 (56%), Gaps = 20/454 (4%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            A V++I   E    ++I +   + +++ +P D ++V V++P  A+ VV S R +++ G 
Sbjct: 52  AAPVLSIGPQEAEIARRIDLTQGRSLVIDLPRDAKEVFVANPKVANAVVRSTRKVFIIGV 111

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G  ++ ++  +G+Q+ +LD+ + RD+  L  TL   +  +   V    D+++L G V 
Sbjct: 112 ENGATSIFVMDAEGRQIASLDVTVGRDLNILRQTLATSLPSARFEVRPAGDSILLSGTVN 171

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +  ++Q+A++++  F+  +G      +    V+N + I G+DQV L+VT+ EV R +LKQ
Sbjct: 172 SATEAQQALDIANAFVGIAGGTVTRGA----VINNITIRGKDQVMLRVTVVEVSRTVLKQ 227

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--SFETVLHALERATAIR 270
            G   S++GS SG + + A  F        G+     +      S +  L A E+A   R
Sbjct: 228 FGV--SLSGSWSGLNLTNATQFALNGDRGLGNLIEGTINGGAGASLKATLKAFEQAGVSR 285

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----VTTHDYGVVLHFTPTVLSPG 326
            LAEPTLTAISG+SA FT+GG+    +  S T A +    +T   YGVVL+FTP VLS  
Sbjct: 286 ILAEPTLTAISGESAKFTAGGEIAVPSGLSCTTANNCIPGITFKQYGVVLNFTPVVLSEN 345

Query: 327 RIGLRIQTEVSEPV--------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           RI +R+ T+V+E          IG  +  +P + +RK++TT+EL SG TI+ AGL++   
Sbjct: 346 RISIRVGTDVTEIDQQNAYSYNIGTTSTSVPGFTIRKSETTIELASGATIMTAGLIQQKN 405

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           +    G+P L  +P+LGALFR+  + R+ETE+ I  TP++ K +   ++ RPDD +    
Sbjct: 406 KAAVMGLPALMNLPVLGALFRSRDYQRDETELMIMVTPYIAKAMDPGEVKRPDDGFVDAT 465

Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
           D +A    R N++YG   A+ +  + Y+G  GFI
Sbjct: 466 DGQAILLGRFNRLYGVVGAAPLAPKAYRGKFGFI 499


>gi|89068017|ref|ZP_01155434.1| Outer membrane general secretion pathway protein, Secretin
           [Oceanicola granulosus HTCC2516]
 gi|89046256|gb|EAR52313.1| Outer membrane general secretion pathway protein, Secretin
           [Oceanicola granulosus HTCC2516]
          Length = 482

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 130/459 (28%), Positives = 216/459 (47%), Gaps = 43/459 (9%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              + + + +N+ ++++      +V +++P  AD+   S RT+Y+ GK  G+  + L+G 
Sbjct: 36  APSRALQVPMNRAVVVESDTPFTEVSIANPGIADISTLSDRTLYVLGKEPGRTTLTLLGA 95

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           DG+ + N+++ +  DI   +  L + +   +I V   ++ +VL G V +I    RA+EL+
Sbjct: 96  DGRLITNVEVQVTPDIDEFKERLAQILPGEHIEVRTAANGIVLSGTVSSIARLDRALELA 155

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           + +            +  +V NL+ + G  QV LKV  AE++R + K +    +  G++ 
Sbjct: 156 QRY------------APDRVSNLMTVGGVQQVMLKVRFAEMQRSVSKSLSSSLTARGTAL 203

Query: 225 GPSKSFAADFGG----------------KFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
           G +    A  G                    +  G   +           +L ALE    
Sbjct: 204 GENLGLTAGTGTLTGNGAIGSALNGNVPAANANNGALLLGFNAGGVEIGMLLEALESRGV 263

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           +RTLAEP LTA+SGQ A F +GG++    VS   G+ S+    +GV L+F P V+    I
Sbjct: 264 VRTLAEPNLTALSGQEARFLAGGEYPVP-VSQDGGSISIEYKPFGVELNFIPRVVDGDLI 322

Query: 329 GLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +Q  VS              + ++R R+  TTVE+  G +  +AGLL DD   L   
Sbjct: 323 NLELQASVSSIDPTNGFVQGGFSIDAFRRRETSTTVEMRDGESFAIAGLLSDDFIDLNSQ 382

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +P +  IP+LGALFR++ + R +TE+ I  TP LV P     L+ P D      +   F 
Sbjct: 383 LPFVGDIPVLGALFRSAEYERNQTELVIIVTPHLVTPTRGEALALPTDRVRPPSERDLFL 442

Query: 445 FNRVNKIYGPK----------EASEVEGQNYKGAIGFIY 473
           F RV    G             A+EV  Q++ G+ G++ 
Sbjct: 443 FGRVTAPDGSPIPSSSAPQSGAAAEVARQDFSGSYGYVL 481


>gi|99082186|ref|YP_614340.1| type II and III secretion system protein [Ruegeria sp. TM1040]
 gi|99038466|gb|ABF65078.1| Hypothetical 443 kDa protein y4xJ [Ruegeria sp. TM1040]
          Length = 497

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 125/462 (27%), Positives = 223/462 (48%), Gaps = 32/462 (6%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89
             + A    IS ++ G    + + +N+ ++++  V   ++ +++P+ AD+   S RT+Y+
Sbjct: 49  SPSPAVAQGISVLKKGTNAVLDVPMNRAVVVEADVPFAELSIANPSIADISSLSDRTIYV 108

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149
            GK+ G   + L+   G  + N+D+ +  D++  +  L++ + +  I V   +D +VL G
Sbjct: 109 LGKSPGLTTLTLLDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSG 168

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            V + Q  QRA++L+E +            +  +V NL+ + G  QV LKV  AE+ R +
Sbjct: 169 TVSSAQRLQRALDLAERY------------APDRVSNLMTVGGIQQVMLKVRFAEMERSV 216

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------------GDFSVKGVLDRFS 255
            K +G    I  S    +     + GG     G              G       +    
Sbjct: 217 SKSLGGSMLIRSSDGAIATGSFQNRGGNGNIFGDSVTSPVQLQSETLGAALFGFDIGAVQ 276

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F  +L ALE+   +RTLAEP L+A+SGQ A+F +GG++    V+   G  +V    +G+ 
Sbjct: 277 FNVLLEALEQKGLVRTLAEPNLSALSGQEANFLAGGEYPVP-VAQEDGVITVEFKPFGIE 335

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTVELPSGGTIVLA 371
           L+F P V+    I L ++  VS      +A      + ++  R+  TTVEL  G +  +A
Sbjct: 336 LNFIPRVVDGDLINLELKAAVSAIDTTNSATFDGFSINAFSRRETATTVELRDGESFAIA 395

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL++D+ +     +P L  +P+LGALFR++ + R ++E+ I  +  LV P     L+ P 
Sbjct: 396 GLIEDEFRDGAAQVPWLGDVPVLGALFRSADYARNQSELVIIVSAHLVTPTRGEALALPT 455

Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           D      +   F F +  +      A EV  Q++ G+ G++ 
Sbjct: 456 DRIRPPSEKNLFLFGQTERAQA-GAAGEVANQDFNGSYGYLL 496


>gi|254440636|ref|ZP_05054129.1| Putative phospholipid-binding domain family [Octadecabacter
           antarcticus 307]
 gi|198250714|gb|EDY75029.1| Putative phospholipid-binding domain family [Octadecabacter
           antarcticus 307]
          Length = 474

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 136/481 (28%), Positives = 227/481 (47%), Gaps = 35/481 (7%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
           FL ++   +A +            +  +       +++ +N+ ++++  V   ++ +++P
Sbjct: 6   FLKATLTGLAIMFTNLPVQLQAETLRVMRGAPSSALNVPMNRAVVVESDVPFTELSIANP 65

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
           + AD+   S RT+Y+ GK  G+  + L+G DG+ + N+++ +  DIA  +  L + +   
Sbjct: 66  SIADISSLSDRTIYVLGKEPGRTTLTLLGGDGRLITNVEVHVTPDIAEFKERLEQILPGE 125

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           NI V   +D +VL G V +I    RA+EL+  +            +  +V NL+++ G  
Sbjct: 126 NIEVRTANDGIVLSGTVSSIARLDRALELANRY------------APDRVSNLMSVGGTQ 173

Query: 195 QVTLKVTIAEVRR--------------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           QV L+V  AE++R                L         TG++ G +   +   G    +
Sbjct: 174 QVMLRVRFAEMQRSVSKSLSSSLALGGSTLGGDLGLALGTGATVGNTGRLSTLSGATPAN 233

Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
               G F             +L ALE    +RTLAEP LTA+SGQ ASF +GG++    +
Sbjct: 234 NDNAGAFLFGFNAGGVEVGILLEALENRGVVRTLAEPNLTALSGQEASFLAGGEYPVP-I 292

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVR 354
           S    A +V    +G+ L FTP V+    I L +   VS          N   + ++R R
Sbjct: 293 SQDGSAITVEYKPFGISLSFTPRVIDGDIINLELHASVSSLDPTNGFSQNGFSIDAFRTR 352

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  TTVE+  G +  +AGLL DD   L   +P    IP+LGALFR++ ++R++TE+ I  
Sbjct: 353 ETSTTVEMRDGESFAIAGLLSDDFVDLSGQVPWAGDIPVLGALFRSAEYSRQQTELVIIV 412

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK--EASEVEGQNYKGAIGFI 472
           TP LV P     L+ P D      +   F F RV     P+   A EV  Q++ G+ G++
Sbjct: 413 TPHLVTPTRGDALALPTDRVRPPTERDLFLFGRVTAEDAPQSGGAGEVARQDFSGSYGYV 472

Query: 473 Y 473
            
Sbjct: 473 L 473


>gi|149915642|ref|ZP_01904168.1| bacterial type II/III secretion system protein [Roseobacter sp.
           AzwK-3b]
 gi|149810534|gb|EDM70377.1| bacterial type II/III secretion system protein [Roseobacter sp.
           AzwK-3b]
          Length = 467

 Score =  362 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 234/472 (49%), Gaps = 28/472 (5%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           ++   +A +           N+  V  G  + +++ +N+ ++++  V   ++ +++P+ A
Sbjct: 9   AALLGLAVVFSGFVTELQAENLQVVRNGAARDLNVTMNRAVVVESDVPFAELSIANPSIA 68

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           D    S RT+Y+ GK  G+  + L+   G+ + N++I +  D++  +  L++ + +  I 
Sbjct: 69  DFSTLSDRTIYVLGKAPGRTTLTLLDDSGRLITNVEIHVSTDVSEFKERLQQILPNERIE 128

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           V   +D +VL G V +    +RA+ L++ +            +  +V NL+ +AG  QV 
Sbjct: 129 VRTANDGIVLSGSVSSTARMERALSLAQRY------------APDRVSNLMVVAGNQQVM 176

Query: 198 LKVTIAEVRRDILKQIGFQ-----HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           LKV  AE++R + KQ+          ++G+ +  + S     G   V    + +      
Sbjct: 177 LKVRFAEMQRSVSKQLSTSLAVDALGVSGNGAALAGSNLPSAGANRVGITANNNAGVAFF 236

Query: 253 RFSFET-----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
            F   +     +L ALE    +RTLAEP LTA+SGQ A F +GG++    V+     TS+
Sbjct: 237 GFDIGSVEIGILLEALETKGVVRTLAEPNLTALSGQEAKFLAGGEYPVP-VAQDNNTTSI 295

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELP 363
               +GV L+F P V+    I L +   VS  +P  G+N G  ++ ++R R   TTV+L 
Sbjct: 296 EFKPFGVELNFIPRVVDGDIINLEMAAAVSSIDPTNGINTGAFNVDAFRRRDTSTTVQLR 355

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G +  +AGLL+DD +     +P L  +PILGALFR++ + R +TE+ I  +  LV P  
Sbjct: 356 DGESFAIAGLLQDDFRDTNAQVPWLGDVPILGALFRSADYARAQTELVIIVSAHLVTPTR 415

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE-ASEVEGQNYKGAIGFIYK 474
              L+ P D   +  +   F   RV     P   A EV  Q++ G+ G++ +
Sbjct: 416 GEALALPTDRVRLPSEMDLFLNGRVLNSNIPSGTAGEVARQDFTGSYGYVME 467


>gi|149200847|ref|ZP_01877822.1| bacterial type II/III secretion system protein [Roseovarius sp.
           TM1035]
 gi|149145180|gb|EDM33206.1| bacterial type II/III secretion system protein [Roseovarius sp.
           TM1035]
          Length = 472

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 218/464 (46%), Gaps = 33/464 (7%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89
               A   +I  V  G    +S+ +N+ ++++      ++ +++P  AD    S RT+Y+
Sbjct: 21  APQPAQAESIRVVRNGTSSALSVAMNRAVVVESDSPFAELSIANPAIADFSTLSERTIYV 80

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149
            GK  G+  + L    GK + N+D+ +  DI   +  L++ +    I V   +D +V+ G
Sbjct: 81  LGKTPGRTTLSLFDGLGKLITNIDVHVSTDIEEFKERLKQILPGEPIEVRSANDGIVISG 140

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            V +    QRA++L+E +            + ++V NL++++G+ QV LKV  AE++R +
Sbjct: 141 TVSSTSRMQRALDLAERY------------APERVSNLMSVSGKQQVMLKVRFAEMQRSV 188

Query: 210 LKQIGFQHSITGSSSG-----PSKSFAADFGGKFVSEGG----------DFSVKGVLDRF 254
            K +    SI    +         +     GG   +  G           F+    +   
Sbjct: 189 SKALSSSLSIDARGANSVGVIGGTNTTNTQGGVLGTLAGAIPGTNENNAAFAFGFDVGSV 248

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
               +L ALE    +RTLAEP LTA+SGQ A F +GG+     V+     TS+    +GV
Sbjct: 249 EVGILLEALETKGVVRTLAEPNLTALSGQEAKFLAGGEFPVP-VAQDNDTTSIEFKPFGV 307

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVL 370
            L+F P V+  G I L +   VS          N   +P++R R   TTV L  G +  +
Sbjct: 308 ELNFVPRVVDDGIINLEMAAAVSSIDTANSLVSNGFAIPAFRRRDTSTTVALRDGESFAI 367

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL+DD +     +P L  +P+LGALFR++ + R +TE+ I  +  LV P     L+ P
Sbjct: 368 AGLLQDDFRDNAGQVPWLGDVPVLGALFRSADYQRSQTELVIIVSAHLVSPSRGEALALP 427

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEA-SEVEGQNYKGAIGFIY 473
            D   +  +   F   RV +    K    EV  Q++ G+ G++ 
Sbjct: 428 TDRVKLPSEKDLFLNGRVARGVSDKGPVGEVAKQDFTGSYGYVM 471


>gi|254487886|ref|ZP_05101091.1| bacterial type II/III secretion system protein [Roseobacter sp.
           GAI101]
 gi|214044755|gb|EEB85393.1| bacterial type II/III secretion system protein [Roseobacter sp.
           GAI101]
          Length = 486

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 134/489 (27%), Positives = 229/489 (46%), Gaps = 39/489 (7%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           F T     L      +A   P     A  + +  V  G  + + + +N+ ++++  +   
Sbjct: 13  FITAALFGLTICAMPLALAAPTAV-QADTLRV--VNRGTNRALEVPMNRAVVVESDIPFA 69

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           ++ +++P  AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  DI+  +  L
Sbjct: 70  ELSIANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAAGQLITNVDVRVASDISEFKERL 129

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
           R+ +    I V   +D +VL G+V + Q  QRA++L+E +            + ++V NL
Sbjct: 130 RQILPGEKIEVRTANDGIVLSGIVSSTQGLQRALDLAERY------------APERVSNL 177

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------------SSSGPSKSFAADFG 235
           +++ G  QV LKV  AE++R + K +    ++ G            +++  S + A    
Sbjct: 178 MSVGGIQQVMLKVRFAEMQRSVSKSLSASLALNGLLGSDLAINGGTNTTNGSTAIANSLN 237

Query: 236 GKFV---SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           G      S  G               +L ALE+  A+R LAEP L A+SGQ A+F +GG+
Sbjct: 238 GSTPTTNSNAGAVLFGFNAGSTQVGLLLEALEQKGAVRFLAEPNLVALSGQEATFLAGGE 297

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGD 347
           +    VS S    SV    +GV + F P V+    I L ++  VS           N  D
Sbjct: 298 YPVP-VSQSGDRISVEYKPFGVEMSFIPRVVDKNLINLELKAAVSAIDPSNSVSLGNGFD 356

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + ++  R+  TTVE+  G +  +AGLL DD       +P +  +P+LGALFR++ + R +
Sbjct: 357 ISAFTRRETSTTVEMRDGESFAIAGLLTDDFTDTSRQLPWIGDVPVLGALFRSANYQRSQ 416

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN---KIYGPKEASEVEGQN 464
           TE+ I  T  LV P     L+ P D      + + F   R +   K      A EV  Q+
Sbjct: 417 TELVIIITAHLVTPTRGDALALPTDRIKPPTENELFLSGRTSSGGKAPTRGAAGEVAKQD 476

Query: 465 YKGAIGFIY 473
           + G+ G++ 
Sbjct: 477 FSGSYGYVL 485


>gi|209886530|ref|YP_002290387.1| type II and III secretion system protein [Oligotropha
           carboxidovorans OM5]
 gi|209874726|gb|ACI94522.1| type II and III secretion system protein [Oligotropha
           carboxidovorans OM5]
          Length = 486

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 165/482 (34%), Positives = 267/482 (55%), Gaps = 28/482 (5%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
              +S+F+  S PS A       ++A+  +   +     + + +G++K +++ +P DV+D
Sbjct: 13  AAAISVFILGSAPSSALATDYSASSASTSHADSLN---ARALRLGISKSLVVDLPRDVKD 69

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           VLV+DP  A+ VV S R  Y+ G +VGQ N+I    DG+QM   D+ + RD+  +   + 
Sbjct: 70  VLVADPKIANAVVRSSRRAYIIGASVGQTNIIFFDADGQQMAAYDVAVTRDLNGIRTAIH 129

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
           + +  S+I+VE + D VVL G      ++Q+A EL+   +    +      + + ++N +
Sbjct: 130 QALPQSDIQVEGLGDGVVLSGTAANQAEAQQAYELAARLIGGPSK------AGELIVNNI 183

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGG 243
            + G DQV L+VT+AEV+R I+KQ+G   S + +       F         G + V    
Sbjct: 184 AVRGRDQVMLRVTVAEVQRSIIKQLGVDLSGSFNYGTAVVDFNNTNTFTALGRRLVDNNA 243

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT------ 297
             +  G     S +  L A+E A  IRTLAEP LTAISG+SA+F +GG+    T      
Sbjct: 244 VSAAFGNGTVPSVKATLRAMESAGVIRTLAEPNLTAISGESATFIAGGEFPIPTGITCQT 303

Query: 298 ---VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPS 350
               S+     S+    +G+ L+FTP VL+ GRI LR+ TEVSE      I V+   +PS
Sbjct: 304 AAGGSTGPCQPSIAFKKFGISLNFTPVVLTEGRISLRVMTEVSEVSSDNSISVSGLTIPS 363

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            + R+A+TT+E+PSGG++ +AGL++D  +Q   G+P L+++P+LG LFR+  F   +TE+
Sbjct: 364 IKTRRAETTLEIPSGGSMAMAGLIQDQTKQAINGLPGLAQVPVLGTLFRSRDFINNQTEL 423

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
            +  TP++V+ VA +DLSRPDD ++   D ++     + +IYG          +Y+G  G
Sbjct: 424 MVLVTPYVVRAVAQKDLSRPDDGFASASDPQSVLLGNITRIYGVPRRGGPVA-SYRGKYG 482

Query: 471 FI 472
           FI
Sbjct: 483 FI 484


>gi|114705456|ref|ZP_01438364.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506]
 gi|114540241|gb|EAU43361.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506]
          Length = 544

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 190/506 (37%), Positives = 279/506 (55%), Gaps = 65/506 (12%)

Query: 33  NAAVINISDVEIGKGK-KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
             A    + V+IG G  +I +GL+K  +L +  D  D+LV++P+ AD +    R +YLFG
Sbjct: 40  QTAYAEQNVVQIGAGHTRIELGLDKSKVLVLSADAHDILVANPSIADALTRDRRHIYLFG 99

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           K VGQ N+I+     +Q+ ++DI IERDIA L   + +++ DS+++VE+++D VVL G V
Sbjct: 100 KQVGQTNLIVFDQANRQIASIDIQIERDIAGLSQAIAKYVPDSDVKVEIMNDNVVLTGRV 159

Query: 152 RTIQDSQRAVELSETFL--SQSGRNQYANSSS---------------------KKVMNLL 188
           RT  DS+R  +++  +L   ++   QY  S+S                      +++NLL
Sbjct: 160 RTPLDSKRVSQIASAYLTGGEATTGQYIRSASAGGESEGSNGDVAFASETRRESQIINLL 219

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFS 246
            I GEDQVTLKVT+AEV+R I+KQ+G   + +    G +     D  FG    +   +F 
Sbjct: 220 QIEGEDQVTLKVTVAEVQRSIIKQLGLNGATSSVIDGMTFGSLIDNPFGLGKAASNSNFG 279

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ 300
           + G +        L A+++A  +RTLAEP LTAISG+SASF  GG+ L  T  S      
Sbjct: 280 LAGTIGDTGIRAQLSAMDQAGVMRTLAEPNLTAISGESASFKVGGEFLLPTGQSYDYGEE 339

Query: 301 -----------------------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
                                          T +YG+ L FTP VLSPGRI L+++T VS
Sbjct: 340 AKREFKGFDGDGRAIYEEVPATRDVRTVETKTIEYGIGLDFTPVVLSPGRISLKVRTSVS 399

Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           EP                     R R ADTTVELPSGG++V+AGL++D+++Q+  G P L
Sbjct: 400 EPTFETPFGSSGGFDGGVTGIGIRKRLADTTVELPSGGSLVIAGLVRDEVRQVVSGFPGL 459

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
           SK+P+LG+LFR+  F R ETE+ +  TP+LV+PVA   L+RPDD  +   D  + F  ++
Sbjct: 460 SKLPVLGSLFRSRDFQRYETELVVIVTPYLVRPVAREALARPDDGLAFASDGASNFLGKI 519

Query: 449 NKIYGPKEASEVEGQNYKGAIGFIYK 474
           N++YG  E     G+ Y G +G+IYK
Sbjct: 520 NRVYGHSETKLPPGR-YHGVVGYIYK 544


>gi|83943939|ref|ZP_00956396.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
           EE-36]
 gi|83954512|ref|ZP_00963223.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83840796|gb|EAP79967.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83845186|gb|EAP83066.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
           EE-36]
          Length = 479

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 126/488 (25%), Positives = 230/488 (47%), Gaps = 38/488 (7%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
           F   ++   +       L    +A A  + +  V+ G  + + + +N+ ++++  +   +
Sbjct: 6   FIKAALLGLTIGAMPFALTAPIDAQANTLRV--VKKGTNRVLEVPMNRAVVVESDIPFAE 63

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           + +++P  AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  D++  +  LR
Sbjct: 64  LSIANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAAGQLITNVDVRVAADVSEFKERLR 123

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
           + +    I V   +D +VL G+V + Q  QRA++L+E +            + ++V NL+
Sbjct: 124 QILPGEKIEVRTANDGIVLSGIVSSTQRLQRALDLAERY------------APERVSNLM 171

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------------SSSGPSKSFAADFGG 236
           ++ G  QV +KV  AE+ R + K +    ++ G            +++  + + A   GG
Sbjct: 172 SVGGIQQVMMKVRFAEMSRSVSKSLSASLALNGLVGNDLAINGGTNTTNTAGAIANSLGG 231

Query: 237 KFV---SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                 S  G               +L ALE+  A+R LAEP L A+SGQ A+F +GG++
Sbjct: 232 TTPASNSNAGAVLFGFNAGSTQVGLLLEALEQKGAVRFLAEPNLVALSGQEATFLAGGEY 291

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDM 348
                 +     SV    +GV + F P V+    I L ++  VS           N  D+
Sbjct: 292 PVPVAQTGD-QISVQYKPFGVEMSFIPRVVDKDLINLELKAAVSAIDASNSVSLGNGFDI 350

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            ++  R+  TTVE+  G +  +AGLL DD       +P +  +P+LGALFR++ + R ++
Sbjct: 351 SAFTRRETSTTVEMRDGESFAIAGLLTDDFTDNSSQLPWIGDVPVLGALFRSANYQRSQS 410

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK---EASEVEGQNY 465
           E+ I  T  LV P     L+ P D      +++ F   R +K         A EV  Q++
Sbjct: 411 ELVIIITAHLVTPTRGEALALPTDRIKPPTESELFLSGRTSKGSTAPTKGAAGEVAKQDF 470

Query: 466 KGAIGFIY 473
            G+ G++ 
Sbjct: 471 SGSYGYVL 478


>gi|84516633|ref|ZP_01003992.1| Outer membrane general secretion pathway protein, Secretin
           [Loktanella vestfoldensis SKA53]
 gi|84509669|gb|EAQ06127.1| Outer membrane general secretion pathway protein, Secretin
           [Loktanella vestfoldensis SKA53]
          Length = 476

 Score =  360 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 136/483 (28%), Positives = 226/483 (46%), Gaps = 38/483 (7%)

Query: 15  FLFSSNPSVA-KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           FL ++   VA  +     A A    +  +       + + +N+ ++++  V   ++ +++
Sbjct: 6   FLKAALAGVALSMTAAAPAMAQDSTLRVLRGAASNALDVPMNRAVVVESDVPFTELSIAN 65

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           P  AD+   S RT+Y+ GK  G+  + L+  DG+ + N+++ +  D+A  +  L + +  
Sbjct: 66  PGIADISSLSDRTIYVLGKEPGRTTLTLLSADGRLITNVEVHVSPDMAEFKERLTQILPG 125

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
            NI V   +D +VL G V +     RA++L++ +            +  +V NL+++ G 
Sbjct: 126 ENIEVRTANDGIVLSGTVSSTARLDRALDLAQRY------------APDRVSNLMSVGGT 173

Query: 194 DQVTLKVTIAEVRR-----------------DILKQIGFQHSITGSSSGPSKSFAADFGG 236
            QV LKV  AE++R                    + I    + T   +G + +   +   
Sbjct: 174 QQVMLKVRFAEMQRSVSKALSSSLSLNGTSLQNGRNIRGGSNTTVGQAGITNTLN-NIVP 232

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                 G F             +L ALE    +R+LAEP LTA+SGQ A+F +GG++   
Sbjct: 233 TANDNNGAFLFGFGAGGVEVGVLLEALESRGVVRSLAEPNLTALSGQQATFLAGGEYPVP 292

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYR 352
            VSS  GA SV    +GV L+FTP V+    I L +   VS          N  ++ ++ 
Sbjct: 293 -VSSEDGAISVEYKPFGVELNFTPRVVDGDVINLELLAAVSAIDPSNSFSANGFEISAFS 351

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+  TTVE+  G +  +AGLL DD   L   +P +  +PILGALFR++ + R +TE+ I
Sbjct: 352 RRETSTTVEMRDGESFAIAGLLSDDFTDLSGQVPWIGDVPILGALFRSAEYARRQTELVI 411

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK--EASEVEGQNYKGAIG 470
             TP LV P     L+ P D      +   F F RV     P    A EV  Q++ G+ G
Sbjct: 412 IVTPHLVSPTRGTALALPTDRVRPPSEQDLFLFGRVTAASAPTRGGAGEVARQDFMGSYG 471

Query: 471 FIY 473
           ++ 
Sbjct: 472 YVM 474


>gi|220922779|ref|YP_002498081.1| type II and III secretion system protein [Methylobacterium nodulans
           ORS 2060]
 gi|219947386|gb|ACL57778.1| type II and III secretion system protein [Methylobacterium nodulans
           ORS 2060]
          Length = 494

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 154/494 (31%), Positives = 243/494 (49%), Gaps = 25/494 (5%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEAN-----AAVINISDVEIGKGKKISIGLN 55
           MR++       +      + PS    P   +       A V+++   E    ++I +   
Sbjct: 2   MRFVPFRALRALLAAGLLATPSGLASPAAAQQRVPAMPAPVLSVGPQEADISRRIDLTQG 61

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           + +++ +P D ++V V++P  A+ VV S R +++ G   G  ++ ++  +G+Q+  LD+ 
Sbjct: 62  RSLVVDLPRDAKEVFVANPKVANAVVRSTRKVFIIGVENGATSIFVMDAEGRQIAALDVT 121

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           + RD+  L  TL   I      V    D+++L G V +  ++Q+A++++  F+   G   
Sbjct: 122 VGRDLNVLRQTLASSIPKGRFEVRPAGDSILLSGSVNSAAEAQQAIDVANAFVGIGGGGV 181

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
               +    +N + I G+DQV L+VT+ EV R +LKQ G   S   S+   +        
Sbjct: 182 PGRGAV---INNITIRGKDQVMLRVTVVEVSRSVLKQFGVNLSGNWSNLNFANVAPLALN 238

Query: 236 GKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           G     G   S         S    L A E+A   R LAEPTLTAISG+SA FT+GGQ  
Sbjct: 239 GGSFPIGNAISGSINFGGGASLTATLKAFEQAGVSRVLAEPTLTAISGESAKFTAGGQLP 298

Query: 295 YK--------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--- 343
                     +        SVT   YGV L FTP VLS  RI +R+ T+V+E        
Sbjct: 299 VPGNLACSAPSNGVQLCTPSVTFKPYGVSLTFTPVVLSENRISIRVGTDVTEIDPQNSMN 358

Query: 344 -----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                    +P + VR ++TTVEL SG T++ AGL++   +    G+P L  +PILGALF
Sbjct: 359 INFSGTTTAIPGFTVRTSETTVELASGATMMTAGLIQQRNRAAITGLPALMNLPILGALF 418

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           R+  + R+ETE+ I  TP++ K +   ++ RPDD +    D +A    R N++YG   AS
Sbjct: 419 RSRDYQRDETELMIMVTPYIAKAMEPAEIKRPDDGFVDATDGQAVLLGRFNRLYGVVGAS 478

Query: 459 EVEGQNYKGAIGFI 472
            +  + Y G  GFI
Sbjct: 479 PLAPKAYHGRFGFI 492


>gi|240139026|ref|YP_002963501.1| putative pilus assembly protein; putative precursor
           [Methylobacterium extorquens AM1]
 gi|240008998|gb|ACS40224.1| putative pilus assembly protein; putative precursor
           [Methylobacterium extorquens AM1]
          Length = 502

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 156/499 (31%), Positives = 251/499 (50%), Gaps = 35/499 (7%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANA------AVINISDVEIGKGKKISIGLNKVII 59
             F  +  + +  +  + A L     A A       V+ I   E    +++ +   + +I
Sbjct: 5   SRFRGLALLLISGAGLASAMLSGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLI 64

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           + +P D ++V V++P  A+ VV S R ++L G + G  ++ ++  +G+Q+  LD+ I RD
Sbjct: 65  VDLPRDAKEVFVANPAVANAVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARD 124

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           I  L  +L++ +      V+ V D++VL G V +  ++Q+A++++  F+  +     A  
Sbjct: 125 INVLRQSLQQSLPGGRFDVKAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATR 184

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----QHSITGSSSGPSKSFAADF- 234
            +  V+N L I  +DQV ++VT+ EV R +LKQ G       S      G   +    F 
Sbjct: 185 GA--VINNLTIRNKDQVMIRVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFP 242

Query: 235 -GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             G    +    +       FSF+  L A E+A   R LAEPTLTAISG+SA FT+GG+ 
Sbjct: 243 LTGSRSPDANALTASVQTGGFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEI 302

Query: 294 LYKTVSSSTGATSV------------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
                 S+    S+            T   YGV L FTP V++  RI +RI T+V +   
Sbjct: 303 PVPLSCSAASTVSIGTSVSQGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDP 362

Query: 342 GVN--------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             +           +P    R ++TTVEL SG T++ AGL++   +    G+P L  +PI
Sbjct: 363 QNSFTYYLNDRPTPVPGTTKRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPI 422

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LGALFR+  + R+ETE+ I  TP++ +P+  R + RPDD +    D +A    R+NKIYG
Sbjct: 423 LGALFRSRDYQRDETELMIMVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYG 482

Query: 454 PKEASEVEGQNYKGAIGFI 472
                 + G  Y+G +GFI
Sbjct: 483 TVGGGTL-GPAYRGRVGFI 500


>gi|328545279|ref|YP_004305388.1| Pilus assembly protein [polymorphum gilvum SL003B-26A1]
 gi|326415021|gb|ADZ72084.1| Pilus assembly protein [Polymorphum gilvum SL003B-26A1]
          Length = 470

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 166/475 (34%), Positives = 272/475 (57%), Gaps = 22/475 (4%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAA-----VINISDVEIGKGKKISIGLNKVIILQVPVDV 66
            +  L ++   +  +  +  A A       ++++  E    + + +GL + +++ V  DV
Sbjct: 6   FATGLLAALAVLVTVSAMPAARADDGFPKTVHVAAGERATARLLRVGLGRSVVVNVAEDV 65

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            DVLVS+P  AD VV S   +++ G   GQAN++L G +G+++ + ++ +E D + L   
Sbjct: 66  ADVLVSNPEIADAVVRSKNRVFVLGNKAGQANLVLFGRNGRELASFNLRVEPDTSDLSAL 125

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L+R + +S+I  E ++  VVL G   +  D+Q A +L+  F         + + +  V+N
Sbjct: 126 LKRVLPNSDIHAESINGNVVLSGTAVSAADAQSAADLATRFGG-------SGAGALPVLN 178

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGG 243
           ++++AG+DQ+ LKVT+AEV R ++KQ+G   S +   G+  G   S +       ++   
Sbjct: 179 MISVAGKDQIQLKVTVAEVDRSVVKQLGVNLSGSIGIGNYRGTFNSASDFPVNPGITSQA 238

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
              +  +    +    + AL+R   IRTLAEPTLTAISG++ASF +GG+     VS    
Sbjct: 239 TGGIGFLAGGTNVNAEIQALQRDGVIRTLAEPTLTAISGENASFLAGGEFPVP-VSQDND 297

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359
              V    +GV L FTP VLS GRI +R++TEVSE      +      + + +VR+A++T
Sbjct: 298 TIGVEFKKFGVGLDFTPVVLSGGRISMRVKTEVSELTNDGAVTTGGIVISALKVRRAEST 357

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VELPSGGT+V+AGLLK+  +Q   GIP L ++P+LGALF++  F R++TE+ +  TP++V
Sbjct: 358 VELPSGGTLVMAGLLKETYKQAVNGIPGLMQLPVLGALFKSRDFLRQQTELVVFVTPYVV 417

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            PVA   L+RPD ++    DA+  F NR+NK++G   A       Y G +G+IY+
Sbjct: 418 TPVAANALTRPDQNFLPPSDAETVFLNRINKLFGVSGAKVPG--TYHGQVGYIYE 470


>gi|259417373|ref|ZP_05741292.1| type II and III secretion system protein [Silicibacter sp.
           TrichCH4B]
 gi|259346279|gb|EEW58093.1| type II and III secretion system protein [Silicibacter sp.
           TrichCH4B]
          Length = 442

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 126/451 (27%), Positives = 221/451 (49%), Gaps = 30/451 (6%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
           IS ++ G    + + +N+ ++++  V   ++ +++P  AD+   S RT+Y+ GK+ G   
Sbjct: 5   ISVLKKGTNAVLDVPMNRAVVVEADVPFAELSIANPGIADISSLSDRTIYVLGKSPGMTT 64

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           + L+   G  + N+D+ +  D++  +  L++ + +  I V   +D +VL G V + Q  Q
Sbjct: 65  LTLLDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSGTVSSAQRLQ 124

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           RA++L+E +            +  +V NL+ + G  QV LKV  AE+ R + K +G    
Sbjct: 125 RALDLAERY------------APDRVSNLMTVGGIQQVMLKVRFAEMERSVSKSLGGSML 172

Query: 219 ITGSSSGPSKS-----------FAADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALERA 266
           I  S    S             F  D      ++    ++ G  +    F  +L ALE+ 
Sbjct: 173 IGSSDGNVSTGTFLNRPEGGGVFGTDSPVNLKADTLGAAIFGFDIGAVQFNVLLEALEQK 232

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
             +RTLAEP L+A+SGQ ASF +GG++    V+   G  +V    +G+ L+F P V+   
Sbjct: 233 GLVRTLAEPNLSALSGQEASFLAGGEYPVP-VAQEEGVVTVEFKPFGIELNFIPRVVDGD 291

Query: 327 RIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            I L ++  VS       A      + ++  R+  TTVEL  G +  +AGL++D+ +   
Sbjct: 292 LINLELKAAVSAIDTTNAATFDGFSINAFSRRETATTVELRDGESFAIAGLIEDEFRDGA 351

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
             +P L  +P+LGALFR++ + R ++E+ I  +  LV P     L+ P D      +   
Sbjct: 352 AQVPWLGDVPVLGALFRSADYERNQSELVIIVSAHLVTPTRGEALALPTDRIRPPSEKNL 411

Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           F F R  +      A EV  Q++ G+ G++ 
Sbjct: 412 FLFGRTERAQ-SGAAGEVANQDFNGSYGYLL 441


>gi|254561621|ref|YP_003068716.1| pilus assembly protein [Methylobacterium extorquens DM4]
 gi|254268899|emb|CAX24860.1| putative pilus assembly protein; putative precursor
           [Methylobacterium extorquens DM4]
          Length = 502

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 153/480 (31%), Positives = 244/480 (50%), Gaps = 29/480 (6%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
             P  A         + V+ I   E    +++ +   + +I+ +P D ++V V++P  A+
Sbjct: 24  MLPGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            VV S R ++L G + G  ++ ++  +G+Q+  LD+ I RDI  L  +L++ +      V
Sbjct: 84  AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDV 143

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           + V D++VL G V +  ++Q+A++++  F+  +     A   +  V+N L I  +DQV +
Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201

Query: 199 KVTIAEVRRDILKQIGF----QHSITGSSSGPSKSFAADF--GGKFVSEGGDFSVKGVLD 252
           +VT+ EV R +LKQ G       S      G   +    F   G    +    +      
Sbjct: 202 RVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFPLTGSRSPDANALTASVQTG 261

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
            FSF+  L A E+A   R LAEPTLTAISG+SA FT+GG+       S+    S+     
Sbjct: 262 GFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVS 321

Query: 308 -------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYR 352
                  T   YGV L FTP V++  RI +RI T+V +     +           +P   
Sbjct: 322 QGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTT 381

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R ++TTVEL SG T++ AGL++   +    G+P L  +PILGALFR+  + R+ETE+ I
Sbjct: 382 KRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMI 441

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             TP++ +P+  R + RPDD +    D +A    R+NKIYG      + G  Y+G +GFI
Sbjct: 442 MVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500


>gi|163745846|ref|ZP_02153205.1| bacterial type II/III secretion system protein [Oceanibulbus
           indolifex HEL-45]
 gi|161380591|gb|EDQ05001.1| bacterial type II/III secretion system protein [Oceanibulbus
           indolifex HEL-45]
          Length = 478

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 128/490 (26%), Positives = 222/490 (45%), Gaps = 39/490 (7%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
           R     +      + P    LP    A+     +  V+ G    + + +N+ ++++  + 
Sbjct: 5   RFLKAALLGLTLGAMPLALTLPSSAGAD----TLRVVKRGTNSSLDVPMNRAVVVESDIP 60

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
             ++ +++P  AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  D++  + 
Sbjct: 61  FAELSIANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAGGQLITNVDVRVAADVSEFKE 120

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
            LR+ +    I V   +D +VL G+V + Q  QRA++L+E +            + ++V 
Sbjct: 121 RLRQILPGEKIEVRTANDGIVLSGIVSSTQRLQRALDLAERY------------APERVS 168

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------GSSSGPSKSFAADF 234
           NL+++ G  QV +KV  AE++R++ K +G   +I              S+  S   A+  
Sbjct: 169 NLMSVGGIQQVMMKVRFAEMQRNVSKSLGSSLAINGAIGGTGINGGTGSTNSSGGVASSL 228

Query: 235 GGKFVS---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           GG   S     G               +L ALE    +R LAEP L A+SGQ A F +GG
Sbjct: 229 GGTIPSSNQNAGAVLFGFNAGSTQVGILLEALEEKGVVRFLAEPNLVALSGQEAKFLAGG 288

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAG 346
           ++      +     +V    +GV L F P V+    I L +   VS           N  
Sbjct: 289 EYPVPVAQTGD-TIAVEFKPFGVELAFIPRVVDKDIINLEMNAAVSAIDGSNSIALGNGI 347

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           ++ ++  R+  TTVE+  G +  +AGLL DD       +P +  +P+LGALFR++ + R 
Sbjct: 348 EISAFTRRETSTTVEMRDGESFAIAGLLTDDFTDSTRQLPWIGDVPVLGALFRSADYQRS 407

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV---NKIYGPKEASEVEGQ 463
           +TE+ I  T  LV P     L  P D      +   F   R     +      A EV  Q
Sbjct: 408 QTELVIIVTAHLVTPTRSEALVLPTDRIKPPSEKDLFLHGRTADGTRTPTRGAAGEVAKQ 467

Query: 464 NYKGAIGFIY 473
           +++G+ G++ 
Sbjct: 468 DFRGSYGYVL 477


>gi|304392384|ref|ZP_07374325.1| type II and III secretion system protein [Ahrensia sp. R2A130]
 gi|303295488|gb|EFL89847.1| type II and III secretion system protein [Ahrensia sp. R2A130]
          Length = 544

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 187/499 (37%), Positives = 282/499 (56%), Gaps = 30/499 (6%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVIN-----------ISDVEIGKGKKISIG 53
            R F         S  P +  +  +  A A  +            I+       K + +G
Sbjct: 47  VRGFMAWSLATALSFAPVLHPIHEMGVAKAQTVAGELRADKNHIVITARNARVPKLVRLG 106

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           L+K +++ +P    DVLV++P  AD V+ + + +YLFGK VGQ NV +  + G Q+  L+
Sbjct: 107 LDKSLVVDLPSVANDVLVANPGVADAVMRTSQRLYLFGKQVGQTNVFVFDNGGNQIAALE 166

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           ILIERDI+ LE TL R I +S+I+ EM++D +VL G V T  DS +A  L++ F+    +
Sbjct: 167 ILIERDISGLEETLSRLIPNSDIQAEMINDNIVLTGRVSTPSDSTKAQSLAQIFVRGGEQ 226

Query: 174 --------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
                   + + ++ + +++NLL I GEDQV LKV+I E++R ++KQ+G   S+T ++ G
Sbjct: 227 TTNPAQQSSIFGDAPTSEIVNLLKIDGEDQVMLKVSIVEIQRSVVKQLGITTSLTNAAEG 286

Query: 226 PSK--SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                + A          G   S   V  + + +  L  L+    IR LAEPTLTAISG+
Sbjct: 287 GFGFSTIAGGSVRNIAGAGLRGSANIVSGQNTLDAQLRVLDHTGMIRMLAEPTLTAISGE 346

Query: 284 SASFTSGGQH-LYKTVSSSTGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           +A F +GG +   + +      TS+   +  YGV L F PTVL+ GRI L+++TEV EP 
Sbjct: 347 AAEFRAGGTYQAPQQIERDENGTSIEYEERQYGVSLQFIPTVLTEGRISLKLKTEVKEPS 406

Query: 341 IGVNAG-----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           +  + G      +   R R A TTVELPSGG++ +AGL++DD++Q   G P LSK+PI G
Sbjct: 407 LHGSTGRSSDAGLFGTRERVASTTVELPSGGSMAIAGLIQDDLRQNISGFPGLSKLPIFG 466

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
           ALFR+  F+R ETE+ I  TP+LV+PVA   L+ PD+ +    +    F  RVN++YG K
Sbjct: 467 ALFRSREFHRSETELVIIVTPYLVRPVARAKLANPDEGFQPASEPAGIFMGRVNRVYGTK 526

Query: 456 EASEVEGQNYKGAIGFIYK 474
           + +  +G+ Y G+IGFI K
Sbjct: 527 QGNLPKGR-YTGSIGFILK 544


>gi|126737254|ref|ZP_01752989.1| bacterial type II/III secretion system protein [Roseobacter sp.
           SK209-2-6]
 gi|126721839|gb|EBA18542.1| bacterial type II/III secretion system protein [Roseobacter sp.
           SK209-2-6]
          Length = 446

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 126/461 (27%), Positives = 218/461 (47%), Gaps = 29/461 (6%)

Query: 25  KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
            LP  + A A  + +  V+ G    + + +N+ I+++      ++ +++P  AD+   S 
Sbjct: 2   ALPVAEPAQANGLRV--VKQGTSITLDVPMNRAIVVESDAPFAELSIANPNIADISSLSD 59

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
           RT+Y+ GK+ G   + L+   GK + N+++ +  D++  +  LR+ +    I V   +D 
Sbjct: 60  RTIYVLGKSPGLTTLTLLDGAGKLITNVNVRVAADVSEFKERLRQILPGEKIEVRTANDG 119

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           +VL G V +    QRA++L+E +            + ++V NL+++ G  QV LKV  AE
Sbjct: 120 IVLSGTVSSSARLQRALDLAERY------------APERVSNLMSVGGVQQVMLKVRFAE 167

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSF 256
           + R + K +    +   S     ++     G   +           G  ++      F  
Sbjct: 168 MERSVSKTLSSSLAFGNSGDVIGETGTWLDGNNGLGNPVQVTQGTEGAVAISFGAGSFRV 227

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
             +L ALE+   +RTLAEP L+A+SGQ ASF +GG++    V        +    +G+ L
Sbjct: 228 GVLLEALEQKGIVRTLAEPNLSALSGQEASFLAGGEYPIPVV--DADGIGIEYKPFGIEL 285

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            F P V+    I L ++  VS          N   +  +  R   TTVEL  G +  +AG
Sbjct: 286 DFIPRVVDQDVINLELEAVVSAIDPTTTVVQNGLTINGFTRRATSTTVELRDGESFAIAG 345

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L++D+       +P +  IPI+GALFR++ + RE+TE+ I  +  LV P     L+ P D
Sbjct: 346 LVQDEFTDSNGQVPWVGDIPIIGALFRSASYQREQTELVIIVSAHLVTPTRGEALTLPTD 405

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
                 + + F F R          +EV GQ+Y G+ G++ 
Sbjct: 406 RVKPPSENELFLFGRTEHNRSGP-VNEVAGQDYNGSYGYVL 445


>gi|89053488|ref|YP_508939.1| type II and III secretion system protein [Jannaschia sp. CCS1]
 gi|88863037|gb|ABD53914.1| type II and III secretion system protein [Jannaschia sp. CCS1]
          Length = 466

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 135/460 (29%), Positives = 225/460 (48%), Gaps = 29/460 (6%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
           PI  A A  + +  VE      + + +N+ ++++  +   ++ V++P  AD+   S R++
Sbjct: 21  PISGAQAQGLRV--VEGESTGTLRVPMNRAVVVEAEMLFAELSVANPAIADIATLSERSI 78

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
           Y+ G+  G+  + L+G DG  + N++I +  D+A L   LR  I    + V   +D +VL
Sbjct: 79  YVLGRAPGRTTMTLLGADGSLIANVEIQVVPDVAELRERLREIIPGEPVEVRTANDGIVL 138

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V +     RA+EL+E +            +  ++ NL+ + G+ QV L+V  AE++R
Sbjct: 139 SGTVGSAFAVDRAMELAERY------------APGRISNLMMVGGQQQVMLQVRFAEMQR 186

Query: 208 DILKQIGFQHSI------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
            + +++     I             G+  G +     +  G      G   V        
Sbjct: 187 TVRQELSASLGIGSTGGNFGTSVGAGNLQGGTGFGTGNLPGGLDGRNGGIGVSFAAGGLQ 246

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
              +L ALE    +RTLAEP LTA+SG +ASF +GGQ    T S S G T++   D+GV 
Sbjct: 247 LSVLLEALESNGMVRTLAEPNLTALSGATASFLAGGQFPVPTESES-GGTTIEFVDFGVQ 305

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L FTPTV+    I L +  E+S     +     P+   R A T VE+  G +  +AGLL+
Sbjct: 306 LDFTPTVVGDHVINLALDAEISSIGEIIATTGAPAINTRNASTVVEMRDGDSFAIAGLLQ 365

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           DD       +P L  +P+LGALFR++ ++R ++E+ I  T  LV PV    L+ P D   
Sbjct: 366 DDFTNSVAEVPWLGDLPVLGALFRSASYSRSQSELVIIITAHLVSPVNGEALALPTDRVR 425

Query: 436 VEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFIY 473
           +  +++ FF  +V          A +V  Q++ G+ G++ 
Sbjct: 426 IPTESELFFQGQVTGSSPRPGTAAGDVAQQDFSGSYGYVL 465


>gi|126733573|ref|ZP_01749320.1| bacterial type II/III secretion system protein [Roseobacter sp.
           CCS2]
 gi|126716439|gb|EBA13303.1| bacterial type II/III secretion system protein [Roseobacter sp.
           CCS2]
          Length = 476

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 130/479 (27%), Positives = 223/479 (46%), Gaps = 35/479 (7%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
            +       L     + A    +  +       +S+ +++ ++++  V   ++ +++P  
Sbjct: 9   AAIAGLTLSLTAAAPSIAPAETLRVLRGAASSALSVPMSRAVVVESDVPFTELSIANPGI 68

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           AD+   S RT+Y+ GK  G+  + L+G +G+ + N++I +  D+A  +  L + +   NI
Sbjct: 69  ADISSLSDRTIYVLGKEPGRTTLTLLGENGRLITNVEIHVSPDMAEFKERLTQILPGENI 128

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            V   +D +VL G V +I    RA++L+E +            + ++V NL+ + G  QV
Sbjct: 129 EVRTANDGIVLSGTVSSIARLDRALDLAERY------------APERVSNLMMVGGTQQV 176

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
            LKV  AE++R + K +    +++G       S              + ++ G +   + 
Sbjct: 177 MLKVRFAEMQRSVSKALSTSVALSGLGFDDDVSITGGTNRTIGQSAINGALSGSVPGSNA 236

Query: 256 ---------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                             +L ALE    +R+LAEP LTA+SGQ A+F +GG++   T + 
Sbjct: 237 NNGAVLFGFGAGGLEVGILLEALETRGVVRSLAEPNLTALSGQEATFLAGGEYPVPTAND 296

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKA 356
             G  SV    +GV L F P V+    I L +   VS          N   + ++  R+ 
Sbjct: 297 G-GTISVEFRPFGVELSFVPRVVDHDIINLELSAAVSAIDPSNGFQANGFSVDAFTRRET 355

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            TTVE+  G +  +AGLL DD   L   +P +  IP+LGALFR++ + R +TE+ I  TP
Sbjct: 356 STTVEMRDGESFAIAGLLSDDFTDLNGQLPWVGDIPVLGALFRSAEYARRQTELVIIVTP 415

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK--EASEVEGQNYKGAIGFIY 473
            LV P     L+ P D      +   F F +V    GP    A EV  Q++ G+ G++ 
Sbjct: 416 HLVSPTRGEALALPTDRVRPPTEQGLFLFGQVANEGGPSSGGAGEVARQDFSGSYGYVL 474


>gi|307943145|ref|ZP_07658490.1| type II and III secretion system protein [Roseibium sp. TrichSKD4]
 gi|307773941|gb|EFO33157.1| type II and III secretion system protein [Roseibium sp. TrichSKD4]
          Length = 482

 Score =  357 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 158/471 (33%), Positives = 266/471 (56%), Gaps = 21/471 (4%)

Query: 15  FLFSSNPSVAKLPPIKEANAAV---INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
              +   S+A +P    A  A    ++++  E    + +S+G+ + +I+     V DVLV
Sbjct: 22  AGIALVLSLAGVPEPAAAQGAFEKRVHVASGERVSSRLLSVGVGRSVIIDTAEAVADVLV 81

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           S+P  AD VV +P  +++ G   GQAN++L    G+++ + ++ +E D + L   +++++
Sbjct: 82  SNPGVADAVVRTPNRIFVLGNKAGQANLVLFSRTGRELASFNLRVEPDTSDLVRFIQKYV 141

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
             SNI  + ++  ++L G      D+QRA +L+  +     +       +  ++N++ + 
Sbjct: 142 PGSNIEAQSLNGNIILSGTAANAADAQRAADLAARYAGDGKK-------ATDILNMITVD 194

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF----GGKFVSEGGDFSV 247
           GEDQV LKVT+AEV R+++KQ+G Q +           FA D     G     +    + 
Sbjct: 195 GEDQVHLKVTVAEVDREVIKQLGVQLNGEIKIGNFGFGFANDTSFNAGTSVAQQTTRLAG 254

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
           + V    +    + AL+R   ++TLAEPTLTAISG++ASF +GG+     +S      +V
Sbjct: 255 ELVSGGTTIGAEVKALQREGIVKTLAEPTLTAISGENASFLAGGEFPIP-ISQDGNEVTV 313

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELP 363
               +GV L FTP VLS GRI L+I TEVSE      + +    +P+ +VR+A++T+ELP
Sbjct: 314 EFKKFGVGLDFTPIVLSGGRISLKITTEVSELSSDGAVNIGTLTIPALKVRRAESTLELP 373

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SGGT+V+AGLL++  +Q   G+P L  +P+LG+LF++  F R +TE+ +  TP++V P+A
Sbjct: 374 SGGTLVMAGLLQESYRQSVNGVPGLMNLPVLGSLFKSRDFLRSQTELVVFVTPYIVNPIA 433

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
              + RPD + +  +D++  F NR+NKIY  +   +     Y G +GFIYK
Sbjct: 434 ASKVQRPDKNLAPANDSETLFLNRLNKIY--RANGQNAQAPYHGQVGFIYK 482


>gi|163851903|ref|YP_001639946.1| type II and III secretion system protein [Methylobacterium
           extorquens PA1]
 gi|163663508|gb|ABY30875.1| type II and III secretion system protein [Methylobacterium
           extorquens PA1]
          Length = 502

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 154/480 (32%), Positives = 247/480 (51%), Gaps = 31/480 (6%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           S P+ A+        + V+ I   E    +++ +   + +I+ +P D ++V V++P  A+
Sbjct: 26  SGPASAQAGL--SGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            VV S R ++L G + G  ++ ++  +G+Q+  LD+ I RDI  L  +L++ +      V
Sbjct: 84  AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDV 143

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           + V D++VL G V +  ++Q+A++++  F+  +     A   +  V+N L I  +DQV +
Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201

Query: 199 KVTIAEVRRDILKQIGF----QHSITGSSSGPSKSFAADF--GGKFVSEGGDFSVKGVLD 252
           +VT+ EV R +LKQ G       S      G   +    F   G    +    +      
Sbjct: 202 RVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFPLTGSRSPDANALTASVQTG 261

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
            FSF+  L A E+A   R LAEPTLTAISG+SA FT+GG+       S+    S+     
Sbjct: 262 GFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVS 321

Query: 308 -------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYR 352
                  T   YGV L FTP V++  RI +RI T+V +     +           +P   
Sbjct: 322 QGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTT 381

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R ++TTVEL SG T++ AGL++   +    G+P L  +PILGALFR+  + R+ETE+ I
Sbjct: 382 KRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMI 441

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             TP++ +P+  R + RPDD +    D +A    R+NKIYG      + G  Y+G +GFI
Sbjct: 442 MVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500


>gi|115525749|ref|YP_782660.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisA53]
 gi|115519696|gb|ABJ07680.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisA53]
          Length = 486

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 156/491 (31%), Positives = 269/491 (54%), Gaps = 38/491 (7%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           R+  R+     ++   S  P+   +       A    +++        +++G++K +++ 
Sbjct: 12  RFAVRSL-AWTAVAALSLQPAALPVIAADYRPA----VANEGQMNAHFLALGISKSVVID 66

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +P D++DVLV+DP  A  V+ S +  Y+ G +VGQ N++     G+Q+   DI + RD+ 
Sbjct: 67  LPRDIKDVLVADPKIATAVIRSAQRAYIIGASVGQTNIVFFDAAGQQIAAYDIAVTRDLN 126

Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
            +   L++ + +++IRVE V    V+L G V +  ++Q+A E++      +         
Sbjct: 127 GIRAALKQTLPNTDIRVEGVGPKGVLLSGSVSSPVEAQQAGEVAARLAEGA--------- 177

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FG 235
            + V+N + + G DQV LKVT+AEV+RDI+KQ+G   S + +      +F        FG
Sbjct: 178 -ENVVNSIAVRGRDQVMLKVTVAEVQRDIIKQMGIDLSASMTYGTAVVNFNNTNPFTAFG 236

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
            + V+  G+          +    L A+E A  +RTLAEP LTAISG+SA+F +GG+   
Sbjct: 237 RQLVT--GNSLATSFGGGPTVTATLRAMESAGVVRTLAEPNLTAISGESATFIAGGEFPV 294

Query: 296 KTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------ 344
            +       +  G T +    +G+ L+FTP V++ GRI LR+ TEVSE     +      
Sbjct: 295 PSGYNYDPVTHVGTTQIAFKKFGISLNFTPVVMTEGRISLRVMTEVSELSNDNSITLTQS 354

Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                 +PS + R+A+TT+E+PSGG++ +AGL+++  +Q   G+P +++IP+LG+LFR+ 
Sbjct: 355 NGDGLTVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGMAQIPVLGSLFRSR 414

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
            +   +TE+ +  TP++V+ VA +DLSRPDD ++   D +      +N+IYG       +
Sbjct: 415 DYVNRQTELMVLVTPYVVRAVAQKDLSRPDDGFAAVSDPQGDLLGSINRIYGVPGKPGPD 474

Query: 462 GQNYKGAIGFI 472
            +NY+G  GFI
Sbjct: 475 -RNYRGTYGFI 484


>gi|188581660|ref|YP_001925105.1| type II and III secretion system protein [Methylobacterium populi
           BJ001]
 gi|179345158|gb|ACB80570.1| type II and III secretion system protein [Methylobacterium populi
           BJ001]
          Length = 502

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 154/481 (32%), Positives = 246/481 (51%), Gaps = 29/481 (6%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           S+    A   P     + V+ I   E    +K+ +   + +I+ +P D ++V V++P  A
Sbjct: 23  STLSGPASAQPGLPGASPVLTIGPNETAVSRKVELSKGRSLIIDLPRDAKEVFVANPAVA 82

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           + VV S R ++L G + G  ++ ++  +G+Q+  LD+ I RDI  L  +L++ +      
Sbjct: 83  NAVVRSSRKLFLIGIDNGATSIFVMDAEGRQIAALDVTIARDINVLRQSLQQSLPSGRFD 142

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           V+ V D++VL G V +  ++Q+A++++  F+  +     A      V+N L I  +DQV 
Sbjct: 143 VKAVGDSLVLSGSVNSASEAQQALDIANAFVGIAAGGGVATRG--TVINNLTIRNKDQVM 200

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGP------SKSFAADFGGKFVSEGGDFSVKGVL 251
           ++VT+ EV R +LKQ G   S   ++  P      + +      G    +    +     
Sbjct: 201 IRVTVVEVARTVLKQFGISTSGNWAALNPLGGNVFTNNTGFPLTGSRSPDANAITASVQT 260

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------------TVS 299
             FSF   L A E+A   R LAEPTLTAISG+SA FT+GG+                T  
Sbjct: 261 GGFSFRATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCAAASTVSIGTSI 320

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSY 351
           S     ++T   YGV L FTP V++  RI +RI T+V +     +           +P  
Sbjct: 321 SQGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGT 380

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R ++TTVEL SG T++ AGL++   +    G+P L  +PILGALFR+  + R+ETE+ 
Sbjct: 381 TRRSSETTVELASGATMMTAGLIQQKNRGAISGLPGLMNLPILGALFRSRDYQRDETELM 440

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
           I  TP++ +P+  R + +PDD Y    D +A    R+NKIYG      + G  Y+G +GF
Sbjct: 441 IMVTPYIAQPMEARQVQKPDDGYVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGF 499

Query: 472 I 472
           I
Sbjct: 500 I 500


>gi|302037439|ref|YP_003797761.1| putative pilus assembly protein CpaC [Candidatus Nitrospira
           defluvii]
 gi|300605503|emb|CBK41836.1| putative Pilus assembly protein CpaC [Candidatus Nitrospira
           defluvii]
          Length = 485

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 140/487 (28%), Positives = 226/487 (46%), Gaps = 41/487 (8%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L      +  L  +  A A  +   D++    + +S+   K ++L  P+      +++P
Sbjct: 11  TLRGIGSGLFALFLVTVAQAHEVASPDIQTRVPRSLSLITGKSLVLDSPIPFSRASIANP 70

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
             AD +V SP+ +Y+ GK  G  N+ L   +G      D+ +  D+  L+  L +   D 
Sbjct: 71  DIADTLVLSPKQLYVIGKAAGTTNLTLWDAEGSVYALYDLAVSPDLTRLKEHLHQLFPDE 130

Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           N ++V    D + L G V +      AV+++ET+  Q            KV+NLL + G 
Sbjct: 131 NDLQVMAAHDRLTLTGTVSSATHVSEAVDVAETYARQ------------KVINLLRVGGL 178

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSG---------------PSKSFAADFGG 236
            QV L+V +AE+ R +L+++G   +    G S G               PS +  A   G
Sbjct: 179 HQVMLEVRVAEMERTLLRRLGVNLAAASGGQSFGVSSLKNLATVLPPTDPSAALVAGPVG 238

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             VS+  +  ++      S+   + AL+    ++ LAEPTL A+SGQ A F +GG+    
Sbjct: 239 LGVSQAVNALLRFQTGSTSWTGFIDALKEENLVKVLAEPTLVALSGQEAHFLAGGEFPIP 298

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352
            V  + G T++    +G+ L+F P VLSP RI + +  EVS+      + +    +P+  
Sbjct: 299 -VPQAFGVTTIQFKKFGIQLNFNPVVLSPTRISVTVAPEVSDLDFANGLSLQGFVVPAIT 357

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+A T VEL  G +  +AGLL+D +++     P+L  IPILGALFR+S F + ETE+ I
Sbjct: 358 TRRASTVVELEDGQSFAVAGLLRDTVRETVSKFPVLGDIPILGALFRSSSFQKNETELVI 417

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN------KIYGPKEASEVEGQNYK 466
             TP LV PV   +L  P   Y   DD   +   R+       +   P            
Sbjct: 418 IVTPHLVTPVTEAELPLPTGQYLEPDDVDFYLMGRLQSRKDKVRTPLPPATQLPFEDRLA 477

Query: 467 GAIGFIY 473
           G +G + 
Sbjct: 478 GPVGHMM 484


>gi|110679396|ref|YP_682403.1| type II/III secretion system protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455512|gb|ABG31717.1| type II/III secretion system protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 463

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 224/471 (47%), Gaps = 22/471 (4%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           ++   L     SV+ +      +A    +  +     + +++  N+ ++++  +   ++ 
Sbjct: 6   ILKAALLGLAISVSPIAFTAPLSAQAEALRIIARETSETLNVSQNRAVVVESEIPFAELS 65

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           +++P  AD+   S R++Y+ GK  G   + L+   G+ + N+++ +  D+   +  LR+ 
Sbjct: 66  IANPGIADISSLSDRSIYVLGKVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKERLRQI 125

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           +    I V   +D +VL G V + Q   +A+EL+  +            +  +V NL+ +
Sbjct: 126 LPGEAIEVRTANDGIVLSGQVSSSQRLSKALELAARY------------APDRVSNLMTV 173

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--GDFSVK 248
            G  QV LKV  AE+ R + KQ+     I GS +               ++   G     
Sbjct: 174 GGVQQVMLKVRFAEMSRGVSKQLQSSLRIGGSDAQAGIGRGIGGIPNLAADSAQGAVFFD 233

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
             L     + +L ALE   A+RTLAEP L ++SGQ A+F +GG++       S    SV 
Sbjct: 234 FGLGSTQVQLLLEALETKGAVRTLAEPNLVSLSGQEANFLAGGEYPVPV--QSEDGISVD 291

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD---MPSYRVRKADTTVELP 363
              +G+ L+F P V+    I L++    S  +P  G++ GD   + ++  R+A TTVE+ 
Sbjct: 292 FKPFGIELNFVPRVVDGDLINLQLSAATSSIDPSNGISVGDGFTVDAFIRREASTTVEMR 351

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G +  +AGLL+D+       +P +S +PILGALFR++ + R +TE+ I  T  LV P  
Sbjct: 352 DGESFAIAGLLEDNFNDNITQVPWISDVPILGALFRSTDYMRNQTELVIIITAHLVTPTR 411

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNR-VNKIYGPKEASEVEGQNYKGAIGFIY 473
              L+ P D      +   F   R +  +     A EV  Q++ G+ G++ 
Sbjct: 412 GEALALPTDRIRPPSEKDLFLNGRTIETLNARGSAGEVAKQDFSGSYGYVM 462


>gi|163733542|ref|ZP_02140985.1| type II/III secretion system protein, putative [Roseobacter
           litoralis Och 149]
 gi|161393330|gb|EDQ17656.1| type II/III secretion system protein, putative [Roseobacter
           litoralis Och 149]
          Length = 440

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 124/451 (27%), Positives = 219/451 (48%), Gaps = 24/451 (5%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           A A  + I  +     + +++  N+ ++++  +   ++ +++P  AD+   S R++Y+ G
Sbjct: 6   AQAEALRI--IARETSETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSDRSIYVLG 63

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           K  G   + L+   G+ + N+++ +  D+   +  LR+ +    I V   +D +VL G V
Sbjct: 64  KVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKERLRQILPGEAIEVRTANDGIVLSGQV 123

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            + Q   +A+EL+  +            +  +V NL+ + G  QV LKV  AE+ R + K
Sbjct: 124 SSSQRLSKALELAARY------------APDRVSNLMTVGGVQQVMLKVRFAEMSRGVSK 171

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAI 269
           Q+     I G+ +               ++   G       L     + +L ALE   A+
Sbjct: 172 QLQSSLRIGGTEAQAGIGRGIGGIPNLAADTAQGAVFFDFGLGSTQVQLLLEALETKGAV 231

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           RTLAEP L ++SGQ A+F +GG++       S    SV    +G+ L+F P V+    I 
Sbjct: 232 RTLAEPNLVSLSGQEANFLAGGEYPVPV--QSEDGISVDYKPFGIELNFVPRVVDGDLIN 289

Query: 330 LRIQTEVS--EPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           L++    S  +P  G++ GD   + ++  R+A TTVE+  G +  +AGLL+D+       
Sbjct: 290 LQLSAATSSIDPSNGISVGDSFTVDAFIRREASTTVEMRDGESFAIAGLLEDNFNDNISQ 349

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +P LS +PILGALFR++ + R +TE+ I  T  LV P     L+ P D      +   F 
Sbjct: 350 VPWLSDVPILGALFRSTDYMRNQTELVIIITAHLVTPTRGEALALPTDRIRPPSEKDLFL 409

Query: 445 FNR-VNKIYGPKEASEVEGQNYKGAIGFIYK 474
             R +  +     A EV  Q++ G+ G++ +
Sbjct: 410 NGRTIQTLNARGAAGEVAKQDFGGSYGYVME 440


>gi|85859139|ref|YP_461341.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB]
 gi|85722230|gb|ABC77173.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB]
          Length = 503

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 132/502 (26%), Positives = 230/502 (45%), Gaps = 52/502 (10%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           +    +  +   +  LP +      V+    V   + +K+++ + K  I++ P +++ V 
Sbjct: 12  VACCLISIALCFLIALPCVAAGPDRVV----VNTSRPQKLTLTVGKSTIVECPQNLKRVS 67

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           ++ P  AD++  SPR +YL GK  G  N+ L   D   M  +D+ +  D+  L+  +   
Sbjct: 68  IAAPDYADILTLSPRQIYLTGKMAGNTNLTLWRSDNSVMSVIDVEVLPDVVGLKEKIHSM 127

Query: 131 IADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
           + D  +IRV    D + L G V +  +  + + L+ ++  +          +  V N L 
Sbjct: 128 MPDEKDIRVTATPDAITLSGTVSSAANMNQVMSLANSYAPK------GKDKTGGVNNFLE 181

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----------------------- 226
           + G  QV L+V ++E+ R ++K++G   +                               
Sbjct: 182 VGGVHQVMLEVRVSEMSRSLIKKLGINWNYLSEGGNTFGMSMLDNLTYTVSPSDANIQPM 241

Query: 227 ---SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
              S S  A   G  VS     + +      ++   + A++    ++ LAEPTL  +SG+
Sbjct: 242 THLSASEGAVSVGTLVSSSVGLAFRFFGGGATWTLFIDAMKDQGLLKVLAEPTLLTLSGK 301

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339
           +ASF +GG+             ++    +GV L+FTPTVLS  +I +++  EVS+     
Sbjct: 302 TASFLAGGEFPIPVPQEEN--ITIEYKPFGVGLNFTPTVLSNKKISMQVSPEVSDLDYTN 359

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            + V    +PS   R+  TTVEL  G +  +AGLLKDDI+Q+   +PLL  IP+LG+LFR
Sbjct: 360 AVAVGGYAVPSITTRRVATTVELADGQSFAIAGLLKDDIRQIVRKVPLLGDIPVLGSLFR 419

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           +S+F + ETE+ I  TP LVKP+ M   + P D Y   +D + +    +        A+ 
Sbjct: 420 SSQFRKNETELVIIVTPRLVKPLDMTKQTLPTDQYVEPNDFEFYLLGSLEGKGENDSATP 479

Query: 460 VEGQN---------YKGAIGFI 472
               +          +G  G+I
Sbjct: 480 TPVSSALPGDKTGGLEGDFGYI 501


>gi|146342078|ref|YP_001207126.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278]
 gi|146194884|emb|CAL78909.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. ORS278]
          Length = 492

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 164/493 (33%), Positives = 274/493 (55%), Gaps = 41/493 (8%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           L R      +I L   NP++A +   ++ +A  +++   ++     +S+G+ K +++  P
Sbjct: 17  LMRALAMSAAIALV-LNPALAPVKAAEDRDAPTVSVGSSKV---HYLSLGIGKSVVVDFP 72

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            DV+DVLV+DP  A+ VV S +  Y+ G  +GQ NV+    +G+Q+   DI I+RD+  +
Sbjct: 73  QDVKDVLVADPKIANAVVRSAKRAYIIGAAIGQTNVVFFDGEGQQVAAYDIAIKRDLNGV 132

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
              L + I    ++++ V D V+L G V +  ++Q+A E++   +  +           K
Sbjct: 133 RQALSQSIPG--VKIDGVGDGVILTGSVSSPVEAQQAGEIAARLVGGA----------DK 180

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----GKFV 239
           V+N + + G DQV LKV ++EVRR+I+KQ+G   S + +      +F         GK +
Sbjct: 181 VVNSIVVRGRDQVMLKVNVSEVRREIVKQLGIDLSASMTYGTAVVNFNQTNPFTAYGKSL 240

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           + G   S  G  +  S    + A+E A  ++TLAEP LTAISG+SA+F +GG+       
Sbjct: 241 AAGNGLSAIGGGNLSSVSATMRAMETAGVVKTLAEPNLTAISGESATFIAGGEFPVPGGY 300

Query: 300 SST-----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------------PVI 341
           S        +TSV    +G+ L+FTP VLS GRI LR+ TEVSE                
Sbjct: 301 SCDPKTGLCSTSVMFKKFGISLNFTPVVLSEGRISLRVMTEVSELSNDNAITLSYATSAN 360

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             ++  +P+ R R+A+TT+E+PSGG++ +AGL+++  +Q   G+P L+++P+LG LFR+ 
Sbjct: 361 SASSVTIPAIRTRRAETTLEIPSGGSMAMAGLIQNQTKQAINGLPGLNQLPVLGQLFRSQ 420

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG-PKEASEV 460
            +   ETE+ +  TP++V+ VA ++LSRPDD ++   D+++    R+N++YG   +   V
Sbjct: 421 DYVNNETELMVLVTPYVVRAVAQKELSRPDDGFAPATDSESALLGRMNRLYGVAAKVDAV 480

Query: 461 EGQNYKGAIGFIY 473
            GQ      GFI 
Sbjct: 481 TGQP--AGFGFII 491


>gi|85705151|ref|ZP_01036251.1| bacterial type II/III secretion system protein [Roseovarius sp.
           217]
 gi|85670473|gb|EAQ25334.1| bacterial type II/III secretion system protein [Roseovarius sp.
           217]
          Length = 428

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 126/440 (28%), Positives = 210/440 (47%), Gaps = 33/440 (7%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           +N+ ++++      ++ +++P  AD    S RT+Y+ GK  G+  + L    G+ + N+D
Sbjct: 1   MNRAVVVESDSPFAELSIANPAIADFSTLSDRTIYVLGKTPGRTTLSLFDGAGQLITNID 60

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           + +  DI   +  L++ +    I V   +D +V+ G V +    QRA++L+E +      
Sbjct: 61  VHVSTDIEEFKERLKQILPGEPIEVRSANDGIVISGTVSSSSRMQRALDLAERY------ 114

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA- 232
                 + ++V NL++++G+ QV LKV  AE++R + K +    SI    +     F   
Sbjct: 115 ------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKALSTSLSIDARGANQVGVFGGT 168

Query: 233 ----DFGGKFVSEGGD----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                 GG   S  G           F+    +       +L ALE    +RTLAEP LT
Sbjct: 169 NTTNTLGGVLGSTAGTIPGANDNNGVFNFGFDVGSVEVGILLEALETKGVVRTLAEPNLT 228

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           A+SGQ A F +GG+     V+     T+V    +GV L+F P V+  G I L +   VS 
Sbjct: 229 ALSGQEAKFLAGGEFPVP-VAQDNDTTTVEFKPFGVELNFVPRVVDDGIINLEMAAAVSS 287

Query: 339 PVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                +       +P++R R   TTV L  G +  +AGLL+DD +     +P L  +P+L
Sbjct: 288 IDTSNSLVSDGFSIPAFRRRDTSTTVALRDGESFAIAGLLQDDFRDNAGQVPWLGDVPVL 347

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
           GALFR++ + R +TE+ I  +  LV P     L+ P D   +  +   F   RV      
Sbjct: 348 GALFRSADYQRSQTELVIIVSAHLVSPSRGEALALPTDRVKLPSEKDLFLNGRVANGVSD 407

Query: 455 KEA-SEVEGQNYKGAIGFIY 473
           + A  EV  Q++ G+ G++ 
Sbjct: 408 RGAVGEVAKQDFTGSYGYVM 427


>gi|254510970|ref|ZP_05123037.1| bacterial type II/III secretion system protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221534681|gb|EEE37669.1| bacterial type II/III secretion system protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 476

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 129/483 (26%), Positives = 221/483 (45%), Gaps = 33/483 (6%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T  + +S  L   +  V+ +     A     N+  V+ G  + + + +N+ I+++     
Sbjct: 10  TIRSWISATLLGLSLVVSPIGDAAWAQ----NLRVVKKGTAESLDVPVNRAIVVESEQPF 65

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            D+ +++   AD+   S RT+Y+ G+  G   + +    G  + N+ + +  D+   +  
Sbjct: 66  ADISIANAGIADISTLSDRTIYVLGRAPGITTLTMFDGAGNLITNVRVRVSPDVTEFKER 125

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           LR+ + +  I V   +D +VL G V +     RA+EL+E +            + ++V N
Sbjct: 126 LRQILPNEQIEVRTANDGIVLSGTVSSSARLARALELAERY------------APERVSN 173

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----------SSSGPSKSFAADFGG 236
           LLN+ G  QV LKV  AE+ R + K +       G          ++ G   +  A+   
Sbjct: 174 LLNVGGVQQVMLKVRFAEMNRSVAKNLSASLGFGGGDATGGFNSLNNQGALNNALANNIP 233

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              +  G               +L ALE    +R+LAEP L+A+SGQ A F +GG+    
Sbjct: 234 FVQTNSGAVLFGFGAGSTQVRLLLEALETKGLVRSLAEPNLSALSGQEAEFLAGGEVPIP 293

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYR 352
            V    G  ++    +GV L F P V+    I L +   VS         +N   +PS+ 
Sbjct: 294 -VPQGDGVVAIEYRQFGVQLLFVPRVVDGNLINLELGASVSSIDQSSDFTINGDSVPSFI 352

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+  TT+EL  G +  +AGL++DD   L   +P L  +P+LGALFR++++ RE++E+ I
Sbjct: 353 TRQTRTTIELRDGESFAIAGLIQDDFTDLNTQVPWLGDVPVLGALFRSAQYQREQSELII 412

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY--GPKEASEVEGQNYKGAIG 470
             T  LV P     L+ P D      +   F   +V +    G   ASEV  Q++  + G
Sbjct: 413 IITAHLVSPTRGEALALPTDRVKPPSEFDLFVNGKVARTERAGNGAASEVAKQDFGTSYG 472

Query: 471 FIY 473
           ++ 
Sbjct: 473 YVL 475


>gi|296444395|ref|ZP_06886360.1| type II and III secretion system protein [Methylosinus
           trichosporium OB3b]
 gi|296258042|gb|EFH05104.1| type II and III secretion system protein [Methylosinus
           trichosporium OB3b]
          Length = 485

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 169/488 (34%), Positives = 261/488 (53%), Gaps = 27/488 (5%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           R+L  T  T +++    S P+VA       A  +    SD +    +++++G+ K II+ 
Sbjct: 6   RHLIPTLATALALVGAGSLPAVA-------APQSWGVESDSDAIMSRRVAMGVGKSIIVD 58

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +P D  +++V +P  A+ VV S R +Y+ G   GQ  +  +   G+Q+ NL+I I RD+ 
Sbjct: 59  LPADAAEIVVGNPKVANAVVRSTRKLYIMGVETGQTTIFALDRSGRQIANLEISIGRDVG 118

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS-- 179
            L   L   + +SNI    V+D ++L G V +  ++QRAV++++ F ++S      ++  
Sbjct: 119 ELGPLLHAALPNSNISARTVNDAIILTGTVDSASEAQRAVDIAKGFAARSASASAQSAGG 178

Query: 180 --SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADF 234
             +   V+N L I  +DQV LKVT+AEV R +LKQ+G      G +    G  +    + 
Sbjct: 179 SPADGLVVNALVIRTQDQVMLKVTVAEVERRVLKQLGISAQSGGETLLKGGWGQLVQQNP 238

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
               V+     S   +         L A ER    R LAEPT+TAISG+SA FT GG+  
Sbjct: 239 FA--VNSALTASSLTINGNNGSTATLQAYERYGVSRVLAEPTVTAISGESAKFTVGGEIA 296

Query: 295 YKTVSSSTGATS------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----N 344
               SS    ++      +    YGV L+FTP VL+ GRI L + TEV+E         N
Sbjct: 297 VPGNSSCIAGSTLCSSVGIVFKPYGVSLNFTPVVLAQGRILLHLATEVTEIDYQAAQAYN 356

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P ++ RK +T+VELPSGG+I  AGLL     Q   G+P L  +P+LGALFR+  + 
Sbjct: 357 GVTVPGFKTRKNETSVELPSGGSIATAGLLTQKSDQAINGLPGLINLPVLGALFRSRDYQ 416

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           R ETE+ I  TP++ + ++ RD++RPDD ++   D +A+   RVN++Y   +  +   Q 
Sbjct: 417 RNETELLIVVTPYIARALSARDVTRPDDGFADASDPQAWLLGRVNRLYANPQHPQAAPQ- 475

Query: 465 YKGAIGFI 472
            KG IGFI
Sbjct: 476 LKGRIGFI 483


>gi|218530654|ref|YP_002421470.1| type II and III secretion system protein [Methylobacterium
           chloromethanicum CM4]
 gi|218522957|gb|ACK83542.1| type II and III secretion system protein [Methylobacterium
           chloromethanicum CM4]
          Length = 499

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 150/477 (31%), Positives = 251/477 (52%), Gaps = 28/477 (5%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           S P+ A+        + V+ I   E    +++ +   + +I+ +P D ++V V++P  A+
Sbjct: 26  SGPASAQAGL--SGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            VV S R ++L G + G  ++ ++  +G+Q+  LD+ I RDI  L  +L+  +      V
Sbjct: 84  AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQLSLPGGRFDV 143

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           + V D++VL G V +  ++Q+A++++  F+  +     A   +  V+N L I  +DQV +
Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGP--------SKSFAADFGGKFVSEGGDFSVKGV 250
           +VT+ EV R +LKQ G   +   ++  P        + +      G +  +G   S    
Sbjct: 202 RVTVVEVARTVLKQFGINVTGNWAALNPLSPTGNVLTNTTPFPLTGAYSPDGNALSASIR 261

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGAT 305
               S +  L A E+A   R LAEPTLTAISG+SA FT+GG+    +     V+ +    
Sbjct: 262 SGGVSLQATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPSNCSAGVAGAACTV 321

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRK 355
           ++    YGV L FTP V++  RI +R+ T+V+E     +             +P+   R 
Sbjct: 322 ALEFKPYGVSLAFTPIVMAENRISIRVATDVTELDRQNSYSFSFPGSNRVTPVPATTRRS 381

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ++TTVEL SG T++ AGL++   +    G+P L  +PILGALFR+  + R+ETE+ I  T
Sbjct: 382 SETTVELASGATMMTAGLIQQKSRASISGLPGLMNLPILGALFRSRDYQRDETELMIMVT 441

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
           P++ +P+  R + RPDD +    D +A    R+NKIYG      + G  Y+G +GFI
Sbjct: 442 PYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 497


>gi|254475652|ref|ZP_05089038.1| type II and III secretion system protein:Transport-associated
           [Ruegeria sp. R11]
 gi|214029895|gb|EEB70730.1| type II and III secretion system protein:Transport-associated
           [Ruegeria sp. R11]
          Length = 452

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 124/465 (26%), Positives = 227/465 (48%), Gaps = 33/465 (7%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
           +P  + A A  + +  V+ G    + + +N+ ++++  V   ++ +++P+ AD+   S R
Sbjct: 3   MPSAQGAWAEGLRV--VKKGTSSNLEVPMNRAVVVESDVPFSELSIANPSIADISSLSDR 60

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
           T+Y+ GK+ G  +    G  G+ + N+D+ +  D++  +  LR+ +    I V   +D +
Sbjct: 61  TIYVLGKSPGPDHPHAFGCVGRLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGI 120

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           VL G+V +    QRA++L+E +            +  +V NL+++ G  QV LKV  AE+
Sbjct: 121 VLSGVVSSSARLQRALDLAERY------------APDRVSNLMSVGGVQQVMLKVRFAEM 168

Query: 206 RRDILKQIGFQHSITG----------SSSGPSKSFAADFGGKFVS---EGGDFSVKGVLD 252
           +R + K +     + G          S+     +      G   +     G F       
Sbjct: 169 QRTVSKSLSASLGVNGGNSVGVNGGTSTLNTQGALTNSLTGNIPAANDNTGAFVFGFNAG 228

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
            F    +L ALE+   +RTLAEP L+A+SGQ A F +GG++    V+   G  ++    +
Sbjct: 229 AFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDGVITIEFKPF 287

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTI 368
           G+ L+F P V+    I L ++  VS         +N   + ++  R++ TTVE+  G + 
Sbjct: 288 GIELNFIPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRESVTTVEMRDGESF 347

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
            +AGL++D+ +     +P +  +P+LG+LFR++ + R +TE+ I  +  LV P     LS
Sbjct: 348 AIAGLIRDEFRDNSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLVTPTRGEALS 407

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            P D      +   F F  V +      ASEV  Q++ G+ G++ 
Sbjct: 408 LPTDRIRPPSETDLFLFGNVARER-KGPASEVAKQDFNGSYGYVL 451


>gi|254473733|ref|ZP_05087128.1| type II and III secretion system protein [Pseudovibrio sp. JE062]
 gi|211957119|gb|EEA92324.1| type II and III secretion system protein [Pseudovibrio sp. JE062]
          Length = 456

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 165/471 (35%), Positives = 272/471 (57%), Gaps = 23/471 (4%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           M++ L  + P +A      EA   V +   V++   +++++G  + I+L    +V+DVLV
Sbjct: 1   MALTLTVTAPQLATAQTNFEATVEVTSQHSVKV---RQLNVGEGRSIVLNTNEEVRDVLV 57

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           S+P  AD VV +   +++FG   GQA+++L G+ GKQ+ + ++ ++ D + L   ++R +
Sbjct: 58  SNPKIADAVVRTRNRVFVFGNETGQASLVLFGNGGKQLASFNLNVQPDPSGLIELIQRLL 117

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            +S I  ++V+++VVL G   +  ++Q+A +++  F+             KK++N + +A
Sbjct: 118 PNSAINADIVNESVVLSGTAISALEAQQAYDIALKFVGND---------DKKIVNTIAVA 168

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFVSEGGDFSVK 248
            +DQV LKVT+AEV R  +KQ+G       S       F           V   G F  +
Sbjct: 169 EKDQVQLKVTVAEVERTTIKQLGVSLQGALSIGALDVKFNTSPAYNINPSVVNAGLFQGQ 228

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
             +   S    + ALER   ++TLAEPTL A+SG++ASF +GG+     V+      S+ 
Sbjct: 229 LPIGGGSIVPTIKALERDGVMKTLAEPTLVAVSGENASFLAGGEFPIP-VAYEDNKISLE 287

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELP 363
              +GV L FTP VLS GRI LRI+TEVSE           A  + + +VR+A++T+ELP
Sbjct: 288 FKPFGVGLDFTPVVLSEGRIKLRIKTEVSELSSEGAVNLAGAISVSALKVRRAESTLELP 347

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SGGT+V+AGLLK +  Q  +GIP L  +PILG +F++  +  ++TE+ I  TP++V+PVA
Sbjct: 348 SGGTLVMAGLLKHNYGQEIDGIPGLKDVPILGTMFKSRDYINKQTELVIFVTPYVVRPVA 407

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
              ++RPDD+++   D    F N++++IY   +A  V+G +Y G IG+IY+
Sbjct: 408 RSQIARPDDNFAAPSDQSTIFLNQLSRIYRSTDAP-VKG-SYHGKIGYIYE 456


>gi|148256957|ref|YP_001241542.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
 gi|146409130|gb|ABQ37636.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
          Length = 489

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 164/493 (33%), Positives = 272/493 (55%), Gaps = 40/493 (8%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
           +L R F T  +I L + NP++A +   ++ +  V+++   ++     +S+G+ K +++  
Sbjct: 14  WLVRAFSTAAAIGL-AINPALAPVHAAEDRDTPVVSVGSSKV---HYLSLGIGKSVVVDF 69

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           P DV+DVLV+DP  A+ VV S R  Y+ G  VGQ NV+    +G+Q+   DI I+RD+  
Sbjct: 70  PQDVKDVLVADPKIANAVVRSARRAYIIGAAVGQTNVVFFDGEGQQVAAYDIAIKRDLNG 129

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           +   L + I    ++++ V D V+L G V +  ++Q+A E++   +            S 
Sbjct: 130 VRQALSQSIPG--VKIDGVGDGVILTGSVSSPVEAQQAGEIASRLVG----------GSD 177

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----GKF 238
           KV+N + + G DQV LKV ++EVRR+I+KQ+G   S + +      +F         GK 
Sbjct: 178 KVVNSIVVRGRDQVMLKVNVSEVRREIVKQLGIDLSASMTYGTAVVNFNNTNPFTAYGKS 237

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           +  G   +V G     S    + A+E A   +TLAEP LTAISG+SA+F +GG+      
Sbjct: 238 LVNGNALNVSG-GGLSSVSATMRAMETAGVTKTLAEPNLTAISGESATFIAGGEFPVPGG 296

Query: 299 -----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------- 346
                ++    TS+T   +G+ L+FTP VLS GRI LR+ TEVSE               
Sbjct: 297 YNCDPTTRVCTTSITYKKFGISLNFTPVVLSEGRISLRVMTEVSELSNDNAITVSYALTS 356

Query: 347 ------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                  +P+ R R+A+TT+E+PSGG++ +AGL+++  +Q   G+P + ++P+LG LFR+
Sbjct: 357 TSSSSVTIPAIRTRRAETTLEIPSGGSMAMAGLIQNQTKQAINGLPGVDQLPVLGQLFRS 416

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
             +   ETE+ +  TP++V+ VA ++L+RPDD ++   D+++    R+N++YG     + 
Sbjct: 417 KDYVNNETELMVLVTPYVVRAVAQKELARPDDGFAPATDSESALLGRMNRLYGIAAKVDT 476

Query: 461 EGQNYKGAIGFIY 473
                 G  GFI 
Sbjct: 477 ATGEPAG-FGFII 488


>gi|83950066|ref|ZP_00958799.1| bacterial type II/III secretion system protein [Roseovarius
           nubinhibens ISM]
 gi|83837965|gb|EAP77261.1| bacterial type II/III secretion system protein [Roseovarius
           nubinhibens ISM]
          Length = 429

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 133/441 (30%), Positives = 216/441 (48%), Gaps = 34/441 (7%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           +N+ I+++  V   ++ V++ + AD    S RT+YL GK  G+  + L+   G+ + N++
Sbjct: 1   MNRAIVVESDVPFAELSVANASIADFSTLSDRTIYLLGKAPGRTTLTLLDEAGRLITNVE 60

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           I +  DI+  +  LR+ + +  I V   +D +VL G+V +    QRA++L++ +      
Sbjct: 61  IHVSADISEFKERLRQILPNEKIEVRTANDGIVLSGVVSSTPRMQRALDLAQRY------ 114

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
                 + ++V NL++++G+ QV LKV  AE++R + K +G    I G S+       + 
Sbjct: 115 ------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKSLGTSLFIDGLSNAGIGGAIST 168

Query: 234 FG---------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            G               G   +  G   +           ++ ALE    +RTLAEP LT
Sbjct: 169 NGIGSSAQTPVGVQPGTGTAGTNNGAAFIGLNAGSAQVGILIQALESKGLVRTLAEPNLT 228

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           A+SGQ A+F +GG++    V+   GA +V    +GV L+F P VL    I L I   VS 
Sbjct: 229 ALSGQEANFLAGGEYPIP-VAQEEGAIAVEFKPFGVQLNFVPYVLDDEVINLEIAAAVSS 287

Query: 339 PVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                   D    +  +R R   TTV L  G +  +AGLL+DD +     +P L  +PIL
Sbjct: 288 IDPSNGYSDGTITIAGFRTRSTSTTVSLRDGDSFAIAGLLQDDFEDTNGQVPWLGDLPIL 347

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
           GALFR++ + R +TE+ I  T  LV P     L+ P D      +A  F   RV +    
Sbjct: 348 GALFRSANYQRSQTELVIIVTAHLVTPTRGEALALPTDRVLPPSEADLFLNGRVARQVRN 407

Query: 455 KEAS--EVEGQNYKGAIGFIY 473
            + S  EV  Q++ G+ G++ 
Sbjct: 408 SKGSVGEVAKQDFNGSYGYVM 428


>gi|157375508|ref|YP_001474108.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis
           HAW-EB3]
 gi|157317882|gb|ABV36980.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis
           HAW-EB3]
          Length = 483

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 117/435 (26%), Positives = 209/435 (48%), Gaps = 24/435 (5%)

Query: 44  IGKGKKI-SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            G  + I  I + K  +L++   +  V V +P   D+ +     +Y+ GK +G  N+++ 
Sbjct: 33  TGASRDIKHIPIFKSRVLKLKQAIHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIMVW 92

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             + + +  +DI I  D+  L+  L  F+    + V+     +++ G    +Q    AVE
Sbjct: 93  DKNEQLVDVIDIEITHDLNGLKTRLHEFLPGEKLGVQTSQGQLLISGQASNLQKMNTAVE 152

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG- 221
           L++ +   +  ++  ++    V+N++ + G+ QV L+V IAEV++++ +Q   +  I   
Sbjct: 153 LAQAYADAASVSKVKST----VLNMMTVGGDHQVMLEVVIAEVQKEVARQFDSKFFIFNK 208

Query: 222 ------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                  ++G   +F  D      S G  F  + +         L   ++    + LAEP
Sbjct: 209 GDKGFIGTAGAGGTFDLDPAAAIDSRG--FFARYLDGNLMMNFALDVAKQHGLAKVLAEP 266

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +TA+SGQSA F SGG+     V  + G+T++   D+GV + F P+VL  G+I L +   
Sbjct: 267 NVTAMSGQSAEFLSGGEFPIP-VPGTNGSTTIQYRDFGVGVKFVPSVLDSGQINLNLNVM 325

Query: 336 VSEPVI---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE               A  +PS   R   TTVEL  G TI ++GL+ D +++  + +P
Sbjct: 326 VSEVSNANSVTLSGGSNTALVVPSIVKRTTATTVELADGQTIAISGLISDTLRENIDKLP 385

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            L  IPILG LF +  F   ++E+ I  TP LV+P   + +S P D + +  D + +   
Sbjct: 386 GLGDIPILGQLFTSKSFQSGQSELVILVTPRLVRPFNKKQISLPTDDFVLPSDMEFYLLG 445

Query: 447 RVNKIYGPKEASEVE 461
           +++     +E  E  
Sbjct: 446 KMSHKQSEQEKHETP 460


>gi|27375777|ref|NP_767306.1| hypothetical protein bll0666 [Bradyrhizobium japonicum USDA 110]
 gi|27348915|dbj|BAC45931.1| bll0666 [Bradyrhizobium japonicum USDA 110]
          Length = 505

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 167/501 (33%), Positives = 280/501 (55%), Gaps = 47/501 (9%)

Query: 6   RTFFT--MMSIFLFSS--NPSVAKLP-----PIKEANAAVINISDVEIGKGKKISIGLNK 56
           RTF+   M+++ L ++    S A+ P     P++  +  V ++  +   K + +S+G+ K
Sbjct: 18  RTFWAGAMLTLGLLAAPGLVSAAEAPVGDQAPLQAPDLGVASVGTIAPAKTRFLSLGVGK 77

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
            +++ +P +V+DVLV+DP  A+ V+ S +  Y+ G  VGQ NV+    DG+Q+   DI +
Sbjct: 78  SVVIDLPREVKDVLVADPKIANAVIRSAQRAYIIGGQVGQTNVVFFTADGQQVAAYDIAV 137

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           +RD+  +   LR+ +    +++E + D+V+L G V +  ++Q+A E++   +        
Sbjct: 138 KRDLNGMRAALRQSLPG--VQIEGIGDSVMLTGSVSSPVEAQQAGEVAAKLVG------- 188

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--- 233
               S+KV+N + + G DQV LKV + EVRRDI+KQ+G   S + ++     +F      
Sbjct: 189 ---GSEKVVNNIVVRGRDQVMLKVVVGEVRRDIVKQLGVDLSASLNAGTAVVNFNNSNPF 245

Query: 234 --FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
              GG  VS  G           +    + A+E A  +RTLAEP+LTAISG+SA+F +GG
Sbjct: 246 SVSGGPLVSSNGLGVTGLAKGVATVNATMRAMETAGVMRTLAEPSLTAISGESATFIAGG 305

Query: 292 QHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------- 338
           +            +    T +T   +G+ L+FTP VLS GRI LR+ TEVSE        
Sbjct: 306 EFPIPGGYACDPVTHVCTTQITYKKFGISLNFTPVVLSEGRISLRVMTEVSELSNQNAIS 365

Query: 339 -----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                     ++  +PS + R+A+TT+E+PSGG++ +AGL++   +Q   G+P + ++PI
Sbjct: 366 VTQAVSASQTSSVTIPSIQTRRAETTLEIPSGGSMAMAGLIQQQTKQAINGLPGVDQVPI 425

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           +GALFR+  F   ETE+ +  TP++V+ VA ++LSRPDD ++   DA+     R+N++YG
Sbjct: 426 IGALFRSQDFVNNETELMVIVTPYVVRAVAQKELSRPDDGFAPASDAQTALLGRMNRLYG 485

Query: 454 -PKEASEVEGQNYKGAIGFIY 473
             +    ++G   +G  GFI 
Sbjct: 486 IARRVDPIDGA--RGDFGFII 504


>gi|90411206|ref|ZP_01219219.1| Flp pilus assembly protein [Photobacterium profundum 3TCK]
 gi|90328052|gb|EAS44373.1| Flp pilus assembly protein [Photobacterium profundum 3TCK]
          Length = 489

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 127/447 (28%), Positives = 216/447 (48%), Gaps = 41/447 (9%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            ++V   + + IS+  NK  ++++P   + + V +P  AD+++     +Y+ GK  G  N
Sbjct: 27  TTNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNKIYVLGKQFGTTN 86

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           VI+     + +  LD+ +  D+  L+  L  F+ +  I V    + +VL G V +     
Sbjct: 87  VIIWDSKDRLITVLDVEVTHDLNALKSKLYEFMPNEKISVYTSQNKLVLSGEVSSADKIA 146

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF--- 215
            AVE++ TF           ++  +++NL+ + G  QV L+VT+AEV+R ++++      
Sbjct: 147 TAVEIANTF-----------TADGEIINLMAVGGSHQVMLEVTVAEVQRSLVREFDSKFV 195

Query: 216 ------QHSITGSSSGPSKSFAADFGGKF----VSEGGDFSVKGVLDRFSFETVLHAL-- 263
                   +  G++ G S               VS   +    G+   F     L A   
Sbjct: 196 FARQSGNWTWGGANGGASVPSNVGILDPILDAAVSNPLNIDDNGLFASFLSSNTLFAAAF 255

Query: 264 ---ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
              +     + LAEPTLTAISG+ A F SGG+      +      ++   ++GV L F P
Sbjct: 256 DIAKTNGLAKVLAEPTLTAISGEEAEFISGGEFPIPVPNDEN--ITIEFKEFGVALKFLP 313

Query: 321 TVLSPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           TV+S   I L +  EVSE          P    +   +PS   R A TT+EL +G TI +
Sbjct: 314 TVMSADSINLALNIEVSEISNQNAVSITPGGTNSQFFVPSLSKRGAKTTIELGNGQTIGI 373

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL ++I  + + +P L  +PI+G LFR+  F + ETE+ I  TP L KPV  +D++ P
Sbjct: 374 AGLLNENITDVVDKLPGLGDLPIIGQLFRSQSFRKGETELVILVTPRLAKPVRKQDITLP 433

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEA 457
            D++   +D + +   R++++   + A
Sbjct: 434 TDNFVEPNDWEYYLLGRMSELKRNEPA 460


>gi|294140774|ref|YP_003556752.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
 gi|293327243|dbj|BAJ01974.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
          Length = 484

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 215/473 (45%), Gaps = 34/473 (7%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           L +     +++     N SV    P   +   ++              I + K  IL + 
Sbjct: 8   LTKVLACCLALCFVFINFSVKAGGPTGASRDIML--------------IPIFKSRILNLK 53

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
             V  V V +P   D+ +     +Y+ GK +G  N+++   + + +  +DI I  D+  L
Sbjct: 54  QTVHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIMIWDENERLVDVIDIEITHDLNGL 113

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           ++ L  F+    + V+     +++ G    +Q    AVEL++ +   +  ++     +  
Sbjct: 114 KLRLHEFLPGEKLGVQTSQGHLLISGQASNLQKMNTAVELAKAYADAASVSKV----NST 169

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           V+N++ + G+ QV L+V IAEV+R++ +Q   +  I G  S  S   A       +    
Sbjct: 170 VLNMMTVGGDHQVMLEVVIAEVQREVARQFDSKFFIFGQGSKLSGGTAGGGATFDLDPAA 229

Query: 244 DFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
             S +G       D       L   ++    + LAEP +TA+SGQSA F SGG+     V
Sbjct: 230 AISNRGFFARYINDNLLMNFALDVAKQNGLAKVLAEPNVTALSGQSAEFLSGGEFPIP-V 288

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----------M 348
             + G+T++   D+GV + F PTVL  G+I L +   VSE     +             +
Sbjct: 289 PGTNGSTTIQYRDFGVGVRFVPTVLDSGQINLNLNVIVSEVSNANSVSLSGGGSNATLIV 348

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS   R   TTVEL  G TI ++GL+ D +++  + +P L  IPILG LF +  F   ++
Sbjct: 349 PSIVKRTTSTTVELADGQTIAISGLINDTLRENIDKLPGLGDIPILGQLFTSKSFKSGQS 408

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           E+ I  TP LV+P   + +S P D + +  D + +   +++      E SE  
Sbjct: 409 ELIILVTPRLVRPFNRKHISLPTDDFVLPSDMEFYLLGKMSHKKQDSERSETP 461


>gi|157961834|ref|YP_001501868.1| type II and III secretion system protein [Shewanella pealeana ATCC
           700345]
 gi|157846834|gb|ABV87333.1| type II and III secretion system protein [Shewanella pealeana ATCC
           700345]
          Length = 478

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 120/424 (28%), Positives = 201/424 (47%), Gaps = 19/424 (4%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           I + K  +L +   V  V V +P+ AD+ +     +Y+ GK +G  NV++   + +    
Sbjct: 37  IPIFKSRVLMLKGPVHRVSVGNPSIADIKLLPNDELYILGKQLGSTNVMIWDKNEQLARI 96

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
           +DI +  D+  L+  L +F+    + V+     ++L G    +Q    AVEL++ +   +
Sbjct: 97  MDIEVTHDLNGLKTRLYQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAA 156

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              Q    +  KV+N++ I G+ QV L+V +AEV+R++ +Q   +  I    S  S    
Sbjct: 157 AGGQ----APSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGSNLSGGLV 212

Query: 232 ADFGGKFVSEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
              GG      G    KG+              L   ++    + LAEP +TA+SGQSA 
Sbjct: 213 GGGGGFDPGSIGGIDAKGLFAQYINGDLMMNFALDIAKQNGLAKVLAEPNVTAMSGQSAE 272

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----- 341
           F SGG+     V    G T++   DYGV + F PTVL  G+I L +   VSE        
Sbjct: 273 FLSGGEFPIP-VPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGFA 331

Query: 342 ----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                     +PS   R   TTVEL  G TI ++GL+ D +++  + +P L  +P+LG L
Sbjct: 332 ISGNTSTTLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQL 391

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           F +  F   ++E+ I  TP LV+    +D+S P D + +  D + +   +++      ++
Sbjct: 392 FTSKSFQSGQSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENSDDS 451

Query: 458 SEVE 461
           S+  
Sbjct: 452 SDTP 455


>gi|167624205|ref|YP_001674499.1| type II and III secretion system protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167354227|gb|ABZ76840.1| type II and III secretion system protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 478

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 115/424 (27%), Positives = 201/424 (47%), Gaps = 19/424 (4%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           I + K  +L +   +  V V +P+ AD+ +     +Y+ GK +G  N+++   + +    
Sbjct: 37  IPIFKSRVLMLNGPIHRVSVGNPSIADIKLLPNDELYILGKQLGSTNIMIWDKNEQLARI 96

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
           +DI +  D+  L+  L +F+    + V+     ++L G    +Q    AVEL++ +   +
Sbjct: 97  MDIEVTHDLNGLKTRLHQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAA 156

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                 + +  KV+N++ I G+ QV L+V +AEV+R++ +Q   +  I    S  S    
Sbjct: 157 A----GDRAPSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFLIFNQGSNLSGGVI 212

Query: 232 A-----DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                 D G     +G     + +         L   ++    + LAEP +TA+SGQSA 
Sbjct: 213 GGGGGFDPGSIGGVDGKGLFAQYINGDLMMNFALDVAKQNGLAKVLAEPNVTAMSGQSAE 272

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----- 341
           F SGG+     V    G T++   DYGV + F PTVL  G+I L +   VSE        
Sbjct: 273 FLSGGEFPIP-VPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGFS 331

Query: 342 ----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                  +  +PS   R   TTVEL  G TI ++GL+ D +++  + +P L  +P+LG L
Sbjct: 332 ISGNTSTSLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQL 391

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           F +  F   ++E+ I  TP LV+    +D+S P D + +  D + +   +++      + 
Sbjct: 392 FTSKSFQSGQSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENTDDT 451

Query: 458 SEVE 461
           S+  
Sbjct: 452 SDTP 455


>gi|84387245|ref|ZP_00990266.1| Flp pilus assembly protein [Vibrio splendidus 12B01]
 gi|84377892|gb|EAP94754.1| Flp pilus assembly protein [Vibrio splendidus 12B01]
          Length = 484

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 125/452 (27%), Positives = 210/452 (46%), Gaps = 27/452 (5%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
             S   +  GK +++  +K   + +      V + DP   D+V+     ++L GK +G  
Sbjct: 16  TASVAALQTGKTVTVPHHKSTHVVLSGKAAKVSLGDPEVLDIVILKSNELFLIGKKLGAT 75

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           N++     G+ + +++I +  D+  L+  L  F+ D  I V    + ++L G V   Q  
Sbjct: 76  NLMAWDSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQM 135

Query: 158 QRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
             A+ ++ET+ S    ++   S S++     V+NL++I G  QV L+VT+AEV+R ++++
Sbjct: 136 NVAMRIAETYSSGQTADKSNESGSEQADATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195

Query: 213 I-----GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHA 262
                  FQ S +  S G S   A   G   +      +  G+L  F      F   L  
Sbjct: 196 FDANFHFFQTSGSDFSWGASSVPAGVLGATPIFNIPTSTDYGILGSFIDSNTLFTFALDV 255

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
            ++    + LAEP LTA+SG  A F +GG+             ++   +YGV L F PTV
Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVP--DEDGITIEYKEYGVGLKFIPTV 313

Query: 323 LSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           LS  +I L +  +VS          +P        +P    R A +T+EL  G TI +AG
Sbjct: 314 LSDKKINLNLAVDVSEIANTSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAG 373

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           LL ++++ +   +P    +PILG LF +  +   ETE+ I  TP L KP+    ++ P D
Sbjct: 374 LLSENVRDISNKMPGFGDVPILGQLFNSQEYISGETELVILVTPRLAKPIDRSKVTLPTD 433

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            +   +D + +   R   I  P E+   + Q 
Sbjct: 434 AFVDPNDLEYYLLGRGAYIAEPSESDSEQSQA 465


>gi|218710406|ref|YP_002418027.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
 gi|218323425|emb|CAV19602.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
          Length = 484

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 125/455 (27%), Positives = 214/455 (47%), Gaps = 27/455 (5%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
            +S   +  GK +++  +K   + +      V + DP   D+V+     ++L GK +G  
Sbjct: 16  TLSFAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVMLKSSELFLIGKKLGAT 75

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           N++     G+ + +++I +  D+  L+  L  F+ D  I V    + ++L G V   Q  
Sbjct: 76  NLMAWDSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQM 135

Query: 158 QRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
             A+ ++ET+ S    ++   S S++     V+NL++I G  QV L+VT+AEV+R ++++
Sbjct: 136 NVAMRIAETYSSGETADESKESGSEQAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195

Query: 213 I-----GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHA 262
                  FQ S +  S G S   A   G   + +    +  G+L  F      F   L  
Sbjct: 196 FDANFHFFQTSGSNISWGASSVPAGVLGATPIFDIPTSTDYGILGSFIDSNTLFTFALDV 255

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
            ++    + LAEP LTA+SG  A F +GG+             ++   +YGV L F PTV
Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVP--DEDGITIEYKEYGVGLKFIPTV 313

Query: 323 LSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           LS  +I L +  +VS          +P        +P    R A +T+EL  G TI +AG
Sbjct: 314 LSDKKINLNLAVDVSEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAG 373

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           LL ++++ +   +P +  +PILG LF +  +   ETE+ I  TP L  P+    ++ P D
Sbjct: 374 LLSENVRDVSNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLASPIDRSKVTLPTD 433

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
            +   +D + +   R   I  P E+   + Q  +G
Sbjct: 434 AFVDPNDLEYYLLGRSAYIAEPSESDSEQSQASQG 468


>gi|78357403|ref|YP_388852.1| type II/III secretion system protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219808|gb|ABB39157.1| type II/III secretion system protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 482

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 125/459 (27%), Positives = 211/459 (45%), Gaps = 50/459 (10%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
           F +++  L S+  + A + P                     + +   K ++L+    V+ 
Sbjct: 17  FPVLAAVLLSAVCAQAAIVPAA-------------------VQLAAGKSVVLETASPVRR 57

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           V V+ P  A V+V SP  +Y+ G   G   + L    G      DI +  DIA L+  L 
Sbjct: 58  VSVAAPEVAQVLVLSPTQVYVTGVKPGGTTLTLWNAAGAVSHVFDIQVSPDIARLKEMLH 117

Query: 129 RFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
           + +    +I V  V +++ L G V +      A++++  +            +  KV NL
Sbjct: 118 KLLPSEKDIMVMTVGESITLAGTVSSPAHIATAMDMARMY------------APDKVTNL 165

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------GPSKSFAADF 234
           + + G  Q+ L+V +AE+RR +++++G   +    +S                 +     
Sbjct: 166 MKVGGMHQIMLEVKVAEMRRSVMQRLGIDLAAAWGNSFAFTMLNQLFTLDNQDGTIGVGR 225

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
               +S       +  +   +    L  L+    ++ LAEPTL   SG+ ASF +GG+  
Sbjct: 226 TAAVLSPNNTGVFQAPVGGMTLTGFLDVLKENGLVKVLAEPTLVCRSGEHASFLAGGEIP 285

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPS 350
              V    G  ++   +YGV L FTPTVLSP +I L+++ EVSE     VI +N   +P 
Sbjct: 286 IP-VPQGLGTVAIEFKEYGVTLDFTPTVLSPRQISLKVEPEVSELDYANVIQINGFSIPG 344

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R+A TTVEL  G +  +AGLL+D++++  +  P L  IP+LG LFR+S + + ETE+
Sbjct: 345 ISSRRASTTVELGDGQSFAIAGLLRDEVRETIKKYPGLGDIPVLGTLFRSSSWQKNETEL 404

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
            I  TP L KP+ M   + P D +    + + F   ++ 
Sbjct: 405 VIIITPRLAKPLDMTAQTLPTDGFREPTEYEFFIQGKME 443


>gi|323137425|ref|ZP_08072503.1| type II and III secretion system protein [Methylocystis sp. ATCC
           49242]
 gi|322397412|gb|EFX99935.1| type II and III secretion system protein [Methylocystis sp. ATCC
           49242]
          Length = 504

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 166/497 (33%), Positives = 255/497 (51%), Gaps = 37/497 (7%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINI---SDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
            I    +  +VA    I  A+A    +   S       ++IS+G+ K II+ +P D  +V
Sbjct: 8   VIGAVWATVAVATATGIAPAHAQGPGVGVESGDNAMLARRISMGVGKSIIVDLPRDATEV 67

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
           +V +P  AD +V S R +Y+ G + GQ  +  +   G+Q+ NL+I I RD+  L   L+ 
Sbjct: 68  VVGNPKVADAIVRSARKLYIMGMDAGQTTIFAVDSSGRQVANLEISIGRDVGELAPLLKA 127

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------------------ 171
            +  SNI    V+D ++L G V +  ++ RAV++++ F S++                  
Sbjct: 128 ALPKSNITARTVNDIIILTGTVSSAGEALRAVDIAKGFASRAMGGGAGGGGGVAGQASNS 187

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSF 230
                  S+   V+N L I GE+QV LKVT+AEV R ++KQ+GF     G +    S   
Sbjct: 188 QVGGVGGSADGNVINALTIRGEEQVMLKVTVAEVERKVIKQLGFSAQAGGETILNGSWGK 247

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                   ++     S   +    +    L A ER    R LAEPT+TA+SG++A    G
Sbjct: 248 LVQENPFAINPTMSNSALIINGPNNTNATLKAFERYGVSRILAEPTVTAVSGEAAKMLVG 307

Query: 291 GQHLYKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           G+       S T           +  +T   YGV L+F P VLS GRI L +  EV+E  
Sbjct: 308 GEIAVPGSGSCTFFTNGGGQPICSPGITFKSYGVSLNFVPIVLSEGRIHLHLAAEVTEVD 367

Query: 341 IGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           +          +P ++ RK +T+VELPSGG+I  AGLL     Q   G+P L  +PILGA
Sbjct: 368 LQNTFTYANVAVPGFKTRKNETSVELPSGGSIATAGLLTQKSSQAISGLPGLLNLPILGA 427

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           LFR+  + R ETE+ +  TP++V+P++ +D+SRPDD ++   D + +   RVN+IY  + 
Sbjct: 428 LFRSRDYLRNETELLVIVTPYIVRPLSAQDVSRPDDGFADASDPQGWLLGRVNRIYSTRN 487

Query: 457 ASEVEGQNYKGAIGFIY 473
             ++  QN+KG IGFI+
Sbjct: 488 NPQLM-QNFKGRIGFIH 503


>gi|46580524|ref|YP_011332.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602159|ref|YP_966559.1| type II and III secretion system protein [Desulfovibrio vulgaris
           DP4]
 gi|46449943|gb|AAS96592.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562388|gb|ABM28132.1| type II and III secretion system protein [Desulfovibrio vulgaris
           DP4]
 gi|311234263|gb|ADP87117.1| type II and III secretion system protein [Desulfovibrio vulgaris
           RCH1]
          Length = 484

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 124/433 (28%), Positives = 204/433 (47%), Gaps = 31/433 (7%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           A + +         ++ +   K  ++     V  + ++D   A VVV SP+ +Y+ GK  
Sbjct: 28  AALTVPTFCGAASSELQVATGKSSVVSTSRPVGRLAIADEAIAGVVVLSPQQVYVTGKKA 87

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRT 153
           G   + L    G  +   D+ +  DIA L+  L R +   N I V  V+DTV L G VR+
Sbjct: 88  GTTTLTLWDGGGAVIGVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGVNDTVTLAGTVRS 147

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
                 A++++  +            +  KV NL+ + G  QV L+V +AE+RR++++++
Sbjct: 148 AASMTTAMDMARLY------------APDKVTNLMQVGGVHQVMLEVKVAEMRRNVMERL 195

Query: 214 GFQ----HSITGSSSGPSKSFA---------ADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           G                ++ F          A   G  +S   + + +    + S    L
Sbjct: 196 GIDLTYAWRGDFIFGMLNQLFTLDSQKGVVDAGPSGAVLSPNVNGAFRITSGQVSIMGFL 255

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
             L++   ++ LAEPTL   SG+ A F +GG+     V    G  ++   ++GV L F P
Sbjct: 256 DVLKQNGLVKVLAEPTLVCRSGEKAEFLAGGEIPIP-VPQGLGTVAIEYKEFGVTLQFLP 314

Query: 321 TVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TV+  GRI +++  EVSE     V+ +    +P+   R+A TTVEL  G +  +AGLL+D
Sbjct: 315 TVVGDGRISMKVAPEVSELDYTNVVQIQGFTIPAITSRRASTTVELADGQSFAIAGLLRD 374

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           D++Q     P+L  +P+LG LFR+S + + ETE+ I  TP L KP+       P D Y  
Sbjct: 375 DVRQAVNKYPVLGDMPVLGTLFRSSNWQKNETELVIIVTPHLAKPLEANATRLPTDAYRE 434

Query: 437 EDDAKAFFFNRVN 449
               + F   R+ 
Sbjct: 435 PSAFEYFILGRME 447


>gi|167589424|ref|ZP_02381812.1| type II and III secretion system protein [Burkholderia ubonensis
           Bu]
          Length = 460

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 139/475 (29%), Positives = 226/475 (47%), Gaps = 37/475 (7%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           I L+      A  P +  A  A +         G  +++   K  +L +P     + V+D
Sbjct: 8   IALWCMACVAA--PGVAFAQRASV------PDAGAPLTLAAGKGDLLSLPEPAATMFVAD 59

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           P+ AD+ V SPRT+++FGK  G   +I +G + + +L   ++++ D   L+  L      
Sbjct: 60  PSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQADTPSLQRVLDSRFPQ 119

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
             ++V     ++++ G V +  D+   ++    +L             +K++N L ++  
Sbjct: 120 WQLKVSGAPGSLMVSGKVPSGADADAVMQSLAPYLQDK----------EKLVNRLTLSRP 169

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAADFGGKFVSEGGDFS 246
            QV L+V + EV R+I +Q+G   S  G S             F        +S  G FS
Sbjct: 170 IQVNLRVRVTEVSRNITQQLGINWSGLGGSGNFIGGLFNGRTLFDPTTSLFNLSPTGAFS 229

Query: 247 VKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--ST 302
           V G     R+S + VL AL++   I  LAEP LTA+SG++ASF +GG+       S  +T
Sbjct: 230 VLGGFRAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGETASFLAGGEIPIPVAQSGTTT 289

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD--MPSYRVRKADT 358
           GA +V    +GV L FTPTVL+  RI L+++ EVS  +P   V  G   +P+  VR+ +T
Sbjct: 290 GAITVEFKPFGVSLDFTPTVLAENRISLKVRPEVSEIDPTNSVTTGGVKVPALSVRRVET 349

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TVEL SG +  + GLL+     +   IP L ++P+LG LF +  F   +TE+ +  TP++
Sbjct: 350 TVELSSGQSFAIGGLLQSQTSDVVSQIPGLGRLPVLGRLFSSKNFQDNKTEVVVIVTPYI 409

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           V+P     L +  D  +       F   R   +         +     GA GF+Y
Sbjct: 410 VQPAGPGQLEQAIDTVARPSSDLEFAVQRNLGLDLLSG----DTPRLVGAAGFVY 460


>gi|78062906|ref|YP_372814.1| type II and III secretion system protein [Burkholderia sp. 383]
 gi|77970791|gb|ABB12170.1| type II and III secretion system protein [Burkholderia sp. 383]
          Length = 460

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 136/458 (29%), Positives = 215/458 (46%), Gaps = 29/458 (6%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
            A+ +           G  +SI   K  +L +P     + V+DP  AD+ V SPRT+++F
Sbjct: 17  VASGSAFAQGARAPDAGAALSIATGKGELLSLPEPATAMFVADPAIADIQVPSPRTVFVF 76

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           GK  G   +I +G + + +L   ++++ D A L+  L        + V     ++++ G 
Sbjct: 77  GKKAGTTTLIALGANHRPILRKTVIVQVDTASLQGVLDSRFPQLKLSVSGAPGSLMVSGK 136

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           V +  D+   ++    +L             +K++N L ++   QV L+V + EV R+I 
Sbjct: 137 VPSAADADAVMQSLTPYLHDK----------EKIVNRLTLSRPIQVNLRVRVTEVSRNIT 186

Query: 211 KQIGFQHSITGSSSGPSKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLH 261
           +Q+G   S  G +             F    G   +S  G FSV G     R+S + VL 
Sbjct: 187 QQLGINWSSLGGAGNFVGGLFNGRTLFDPTNGLFNLSPTGAFSVLGGFRAGRWSIDVVLD 246

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFT 319
           AL++   I  LAEP LTA+SG++ASF +GG+         SSTGA +V    +GV L FT
Sbjct: 247 ALDQEGLITMLAEPNLTAMSGETASFLAGGEIPIPVAQAGSSTGAITVEFKPFGVSLDFT 306

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PTVL+  RI L+++ EVSE     +       +P   VR+ DTTVEL SG +  + GLL+
Sbjct: 307 PTVLADNRISLKVRPEVSEIDTNNSVTTGGVKVPGLTVRRVDTTVELSSGQSFAIGGLLQ 366

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
                    IP L ++PI+G LF +  F   +TE+ +  TP++V+P     L +  D  +
Sbjct: 367 SQTADTVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQAIDTVA 426

Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
                  F       +         +     GA GF+Y
Sbjct: 427 RPSSDLEFAVQHNLGLDLLSG----DTPRLVGAAGFVY 460


>gi|307294424|ref|ZP_07574268.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
 gi|306880575|gb|EFN11792.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
          Length = 503

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 140/479 (29%), Positives = 226/479 (47%), Gaps = 47/479 (9%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
           ++   + S+   S+  S+  LP   +A  A +N+S+       ++ + LNK  +L     
Sbjct: 5   KSLPMLASLLTLSAGASL--LPIQAQAQIASLNLSNAN--HAGQLDVPLNKSQVLTADRP 60

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
               LV +   ADV+  + R++Y+ GK +G  ++ L       +  +D+ +  D+  L+ 
Sbjct: 61  FAKALVGNAEIADVLPMTNRSVYVLGKKMGTTSLTLYDSRNIMIAVVDVAVGPDVVTLKR 120

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
            L   +    I   + +D+VVL G + +     RAV++++T+               KV+
Sbjct: 121 QLSDLLPGQPIGARISNDSVVLTGTLSSAAAVDRAVQIAKTYAG------------DKVV 168

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---------GPSKSFAADFGG 236
           N++++    QV L+V  +E+ R   KQ G   +    S            S +  +D  G
Sbjct: 169 NMMSVGASQQVMLEVRFSEMSRGAAKQFGINTAFLSDSGKVVGGIGNAAQSSAILSDTNG 228

Query: 237 K-------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           +        +   G  +    +   +  T L ALER   + TLAEPTL A+SG++ASF +
Sbjct: 229 RPIVDLSKILDSFGIGAANFSIGSLNITTALDALERKGVVTTLAEPTLVALSGETASFLA 288

Query: 290 GGQHLYKTVSSSTG-----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           GG+       S++G           A ++    +GV L FTPTVL  G I L ++ EVS 
Sbjct: 289 GGEFPIPVAQSNSGGGGGGGGNSGNAITIEFKPFGVSLGFTPTVLDDGIINLVVEPEVSS 348

Query: 339 P----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                 + VN   +P  + R+A TT+EL  G +  LAGLL+ D Q      P+L  IPI+
Sbjct: 349 IDPSASVTVNGLTIPGLQTRRASTTLELRDGQSFALAGLLRKDFQDTVRQFPILGSIPII 408

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           GALFR+S F + ETE+ I  TP LVKP+   D++ P D      +   F   R +K  G
Sbjct: 409 GALFRSSGFQKSETELVIIVTPRLVKPMRAEDVALPTDRVKPPHELDLFLMGRTDKAVG 467


>gi|212635453|ref|YP_002311978.1| Flp pilus assembly protein [Shewanella piezotolerans WP3]
 gi|212556937|gb|ACJ29391.1| Flp pilus assembly protein [Shewanella piezotolerans WP3]
          Length = 479

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 117/425 (27%), Positives = 198/425 (46%), Gaps = 20/425 (4%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           I + K  +L +   V  V V +P+ AD+ +     +Y+ GK +G  N+++   D +    
Sbjct: 37  IPIFKSRVLMLEGPVHRVSVGNPSIADIKLLPNDELYILGKQLGSTNIMIWDKDEQLSKI 96

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
           +DI +  D+  L+  L  F+    + V+     ++L G    +Q    AVEL++ +   +
Sbjct: 97  MDIEVTHDLNGLKTRLHEFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAA 156

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------SSG 225
                  ++  +V+N++ I G+ QV L+V +AEV+R++ +Q   +  I            
Sbjct: 157 A----GGTAPSRVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGDHLAGGVI 212

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                    GG    +G     + V         L   ++    + LAEP +TA+SGQSA
Sbjct: 213 GGGGGGFAPGGIGGVDGKGLFAQYVNGDLLMNFALDVAKQNGLAKVLAEPNVTAMSGQSA 272

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---- 341
            F SGG+     V    G T+V   DYGV + F PTVL  G+I L +   VSE       
Sbjct: 273 EFLSGGEFPIP-VPGENGNTTVEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGF 331

Query: 342 -----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                   +  +PS   R   TTVEL  G TI ++GL+ D +++  + +P L  +P+LG 
Sbjct: 332 TISGNTSTSLVVPSLTKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQ 391

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           LF +  F   ++E+ I  TP LV+P    D+S P D + +  D + +   +++       
Sbjct: 392 LFTSKSFQNGQSELVILVTPRLVRPFNRNDISLPTDGFVLPSDVEFYLLGKLSHKEKSDT 451

Query: 457 ASEVE 461
            S++ 
Sbjct: 452 NSDMP 456


>gi|323499921|ref|ZP_08104880.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326]
 gi|323315162|gb|EGA68214.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326]
          Length = 487

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 119/453 (26%), Positives = 209/453 (46%), Gaps = 32/453 (7%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
               GK + +  +K   + +    + V + DP   D+V+     ++L GK +G  N++  
Sbjct: 21  ATQSGKIVKVPHHKSTHVTLAAKAKRVSLGDPEVLDIVMLKSDEVFLIGKKLGSTNLMAW 80

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
              G+ + +++I +  D+  L+  L  F+ +  I V    + ++L G +       +A+ 
Sbjct: 81  DSRGRLIESINIEVTHDLNSLKAKLYEFLPNEEIEVHSAQNRLILSGQISNQAAMNKALR 140

Query: 163 LSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           ++ET+ +    ++   S S++     V+NL+ I G  QV L+VT+AEV+R ++++     
Sbjct: 141 VAETYSAGQEADKENRSLSEQVQKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKFDSNF 200

Query: 218 SI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH-------ALE--- 264
                 G+ S    S  A         G  F+  G+ +     T +        AL+   
Sbjct: 201 HFFESNGNFSWGGTSAGAIIDDVNGGIGPIFNAPGIDNTGFLGTFIDGDTLFTFALDIAK 260

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           +  + + LAEP LTA+SG  A F +GG+             ++   +YGV L F PTVLS
Sbjct: 261 QNGSAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DDDGITIEYKEYGVGLKFIPTVLS 318

Query: 325 PGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
              I L +  +VSE                   +P    R A +T+EL  G TI +AGLL
Sbjct: 319 DKHINLNLAIDVSEIANSATLTLNPGGTNGTYVIPPITRRSASSTLELADGQTIGIAGLL 378

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            ++++ +  G+P  S IP+LG +F +  +   ETE+ I  TP L KP+    +S P D +
Sbjct: 379 SENVRDVVSGVPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRSKVSLPTDSF 438

Query: 435 SVEDDAKAFFFNRVNKIY--GPKEASEVEGQNY 465
              +D + +   R   I   G  +++E +  N+
Sbjct: 439 VEPNDFEYYLLGRGAYIAPTGKSKSNESQESNF 471


>gi|86147467|ref|ZP_01065779.1| Flp pilus assembly protein [Vibrio sp. MED222]
 gi|85834760|gb|EAQ52906.1| Flp pilus assembly protein [Vibrio sp. MED222]
          Length = 485

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 123/447 (27%), Positives = 210/447 (46%), Gaps = 27/447 (6%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
             S   +  GK +++  +K   + +      V + DP   D+V+     ++L GK +G  
Sbjct: 16  TASVAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVILKSNEVFLIGKKLGAT 75

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           N++     G+ + +++I +  D+  L+  L  F+ D  I V    + ++L G +   Q  
Sbjct: 76  NLMAWDSRGQLIESINIEVTHDLNSLKSKLYEFLPDETIEVHSAQNRLLLSGQISNQQKM 135

Query: 158 QRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
             A+ ++ET+ +    +    S S++     V+NL++I G  QV L+VT+AEV+R ++++
Sbjct: 136 NVAMRIAETYAAGQAADDSKESGSEQVAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195

Query: 213 I-----GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHA 262
                  FQ S +  S G S   A   G   V +    +  G+L  F      F   L  
Sbjct: 196 FDANFHFFQTSGSNFSWGASSVPAGALGATPVFDIPTSTDYGILGSFIDSNTLFTFALDV 255

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
            ++    + LAEP LTA+SG  A F +GG+             ++   +YGV L F PTV
Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVP--DEDGITIEYKEYGVGLKFIPTV 313

Query: 323 LSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           LS  +I L +  +VS          +P        +P    R A +T+EL  G TI +AG
Sbjct: 314 LSDKKINLNLAVDVSEIANSSSLTIDPGSTNATYFIPPITRRSASSTLELADGQTIGIAG 373

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           LL ++++ +   +P +  +PILG LF +  +   ETE+ I  TP L KPV    ++ P D
Sbjct: 374 LLSENVRDVSNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLAKPVDRSKVTLPTD 433

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASE 459
            +   +D + +   R   I  P ++ +
Sbjct: 434 AFVDPNDLEYYLLGRSAYIAEPSDSED 460


>gi|328953626|ref|YP_004370960.1| type II and III secretion system protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328453950|gb|AEB09779.1| type II and III secretion system protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 503

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 137/493 (27%), Positives = 216/493 (43%), Gaps = 46/493 (9%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           + ++ L   + +V   P +  A A +  + D ++ +  ++ +G  +  +L+    +  + 
Sbjct: 21  LAAMVLILGSAAVYSPPSVLAAQALLERVKDEDLEQVIRLRVG--RSKVLRTSFTISRIS 78

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V+DP  AD+++ S R +Y+ G   G  N+ L G   +   +  + +E D++ L+  L + 
Sbjct: 79  VADPEVADIIMISEREVYINGNAPGVTNISLWGK--RSFSSAKVTVEADVSLLKEKLFKV 136

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           +    I VE   DTVVL G V      + A+ L+  F         +     KV+NLL+I
Sbjct: 137 LPKEKIAVEAAEDTVVLSGEVSGPVAQETAISLATAF---------SGGKKDKVVNLLHI 187

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
            G  QV + V +AE+ R + K++G   + +  +     +                     
Sbjct: 188 GGVQQVMVAVRVAEINRSVGKEMGINFAYSNKAGNFGATLLNSLSILKNIDRNLDSVTAP 247

Query: 236 GKFVSEGG-----------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G  V+ G            +    G+   F +      L++    R LAEP L   SGQ 
Sbjct: 248 GVLVNPGVTTSSQQFSSSVNAVFGGLYGSFFWTAFFDVLKKNGLGRILAEPNLVTTSGQE 307

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------E 338
           ASF +GG+     V S  G TS+    +GV L FTPTVL   +I LRI  EVS      +
Sbjct: 308 ASFLAGGEFPIP-VPSGLGTTSIDYKKFGVGLVFTPTVLDNDKIALRINPEVSELDFSSQ 366

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             + VN   +P  +VR+  T VE+  G T+ +AGLL D  + +    PLL  +PILG LF
Sbjct: 367 TTVVVNNFIVPGLKVRRTTTQVEMKDGQTLAIAGLLSDQHRNVVNKYPLLGDLPILGVLF 426

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           R+S F + ETE+ I  TP LVK         P D Y    D + +   R        +  
Sbjct: 427 RSSSFQKSETELVILVTPHLVKSQPPGPHRLPTDKYIEPTDLEFYLLGRSEGRDKKPQPP 486

Query: 459 EVEGQNYKGAIGF 471
                      GF
Sbjct: 487 AASPAREITPPGF 499


>gi|260771478|ref|ZP_05880403.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio furnissii CIP 102972]
 gi|260613604|gb|EEX38798.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio furnissii CIP 102972]
 gi|315181060|gb|ADT87974.1| Flp pilus assembly protein, secretin CpaC [Vibrio furnissii NCTC
           11218]
          Length = 489

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 203/447 (45%), Gaps = 30/447 (6%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
            GK +++  +K   +++      V + DP   D+V+     ++L GK +G  N++     
Sbjct: 24  SGKVVTVPHHKSTYVKLQGAASRVSLGDPEVLDIVMLKADELFLIGKRLGSTNLMAWDRR 83

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G+ + +++I +  D+  L+  L  F+ +  I V    + ++L G V + +    A+ L+E
Sbjct: 84  GQLLESINIEVTHDVNSLKAKLYEFLPNETISVHSAQNRLILSGQVSSQEKMNLALRLAE 143

Query: 166 TFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           T+ S    ++  +S +K+     V+NL++I G  QV ++VT+AEV+R ++++        
Sbjct: 144 TYASGDTADKATDSRNKEAEKTGVVNLMSIGGAQQVMIEVTVAEVQRSLVRRFDSNFHFF 203

Query: 221 GSSSGPSKSFAADFG--------GKFVSEGGDFSVKGVLDRF-----SFETVLHALERAT 267
             +   S    +  G           V         G+L  F      F   L   +   
Sbjct: 204 EGNGKFSWGATSAGGYIDDITGVAGPVFNAPTIDSTGLLSTFIDGDTLFTLALDVAKENG 263

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             + LAEP LTA+SG  A F +GG+      +      ++   +YGV L F PTVLS  +
Sbjct: 264 VAKVLAEPNLTALSGAKAEFLAGGEFPIPVPNRD--GITIEYKEYGVGLKFIPTVLSDKK 321

Query: 328 IGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           I L +  +VSE                A  +P    R A +T+EL  G TI +AGLL ++
Sbjct: 322 INLNLAVDVSEIASSTTLTVSPSGTNAAYYIPPITRRSAASTLELADGQTIGIAGLLSEN 381

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
           ++      P +  IP+LG LF +  +   ETE+ I  TP L KP+    +  P D +   
Sbjct: 382 VRDSVSKFPGIGDIPVLGQLFNSQEYVSGETELVILVTPRLAKPIDRSKVVLPTDAFVEP 441

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQN 464
            D K +   +   I GP++    +  +
Sbjct: 442 TDLKYYLLGQGAYIAGPRDVKRTKASD 468


>gi|258621447|ref|ZP_05716481.1| Flp pilus assembly protein [Vibrio mimicus VM573]
 gi|262171232|ref|ZP_06038910.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus MB-451]
 gi|258586835|gb|EEW11550.1| Flp pilus assembly protein [Vibrio mimicus VM573]
 gi|261892308|gb|EEY38294.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus MB-451]
          Length = 488

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 119/447 (26%), Positives = 199/447 (44%), Gaps = 30/447 (6%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            +   I  GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N
Sbjct: 17  TAQGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTN 76

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G  + +L++ +  D+  L+  L   + D  I+V    + ++L GMV   +   
Sbjct: 77  LMAWDSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMN 136

Query: 159 RAVELSETFLSQSGRNQYANSSS-----KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            A+ ++ET+ +    ++   S +       V+NL+ I G  QV L+VT+AEV+R ++++ 
Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196

Query: 214 GFQH-----SITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGVLDRF-----SFETVL 260
                    +   S  G S     D  G  V       +    G+L  F      F   L
Sbjct: 197 DSNFHFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFAL 256

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
              +     + LAEP LTA+SG  A F +GG+             ++   +YGV L F P
Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DKDGVTIEYKEYGVGLKFIP 314

Query: 321 TVLSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           T+LS  RI L +  +VS           P     +  +P    R A +T+EL  G TI +
Sbjct: 315 TILSDKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGI 374

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL ++++ +   +P    IP+LG LFR+  +   ETE+ I  TP L KPV    ++ P
Sbjct: 375 AGLLSENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLP 434

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEA 457
            D +    D K +       I     A
Sbjct: 435 TDAFVEPSDFKYYLLGEGAYIAESPVA 461


>gi|258627504|ref|ZP_05722285.1| Flp pilus assembly protein [Vibrio mimicus VM603]
 gi|258580310|gb|EEW05278.1| Flp pilus assembly protein [Vibrio mimicus VM603]
          Length = 488

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 119/447 (26%), Positives = 199/447 (44%), Gaps = 30/447 (6%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            +   I  GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N
Sbjct: 17  TAQGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTN 76

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G  + +L++ +  D+  L+  L   + D  I+V    + ++L GMV   +   
Sbjct: 77  LMAWDSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMN 136

Query: 159 RAVELSETFLSQSGRNQYANSSS-----KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            A+ ++ET+ +    ++   S +       V+NL+ I G  QV L+VT+AEV+R ++++ 
Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196

Query: 214 GFQH-----SITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGVLDRF-----SFETVL 260
                    +   S  G S     D  G  V       +    G+L  F      F   L
Sbjct: 197 DSNFHFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFAL 256

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
              +     + LAEP LTA+SG  A F +GG+             ++   +YGV L F P
Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DKDGVTIEYKEYGVGLKFIP 314

Query: 321 TVLSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           T+LS  RI L +  +VS           P     +  +P    R A +T+EL  G TI +
Sbjct: 315 TILSDKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGI 374

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL ++++ +   +P    IP+LG LFR+  +   ETE+ I  TP L KPV    ++ P
Sbjct: 375 AGLLSENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLP 434

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEA 457
            D +    D K +       I     A
Sbjct: 435 TDAFVEPSDFKYYLLGEGAYIAESPVA 461


>gi|262165919|ref|ZP_06033656.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus VM223]
 gi|262025635|gb|EEY44303.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus VM223]
          Length = 488

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 119/443 (26%), Positives = 198/443 (44%), Gaps = 30/443 (6%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            I  GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N++  
Sbjct: 21  AIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTNLMAW 80

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
              G  + +L++ +  D+  L+  L   + D  I+V    + ++L GMV   +    A+ 
Sbjct: 81  DSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMNIALR 140

Query: 163 LSETFLSQSGRNQYANSSS-----KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           ++ET+ +    ++   S +       V+NL+ I G  QV L+VT+AEV+R ++++     
Sbjct: 141 VAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNF 200

Query: 218 -----SITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGVLDRF-----SFETVLHALE 264
                +   S  G S     D  G  V       +    G+L  F      F   L   +
Sbjct: 201 HFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFALDIAK 260

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                + LAEP LTA+SG  A F +GG+             ++   +YGV L F PT+LS
Sbjct: 261 ENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DKDGVTIEYKEYGVGLKFIPTILS 318

Query: 325 PGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             RI L +  +VS           P     +  +P    R A +T+EL  G TI +AGLL
Sbjct: 319 DKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGIAGLL 378

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            ++++ +   +P    IP+LG LFR+  +   ETE+ I  TP L KPV    ++ P D +
Sbjct: 379 SENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLPTDAF 438

Query: 435 SVEDDAKAFFFNRVNKIYGPKEA 457
               D K +       I     A
Sbjct: 439 VEPSDFKYYLLGEGAYIAESPVA 461


>gi|163751744|ref|ZP_02158962.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica
           KT99]
 gi|161328396|gb|EDP99555.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica
           KT99]
          Length = 484

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 120/429 (27%), Positives = 212/429 (49%), Gaps = 24/429 (5%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + I + K  I+ +   V  V V +P   D+ +     +Y+ GK +G  N+++   + + +
Sbjct: 40  MQIPIFKSRIINLKHAVHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIMIWDENERLV 99

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
             +DI I  D+  L++ L  F+    + V+     +++ G    ++    AVEL++ + +
Sbjct: 100 DVIDIEITHDLNGLKLRLHEFLPGEKLGVQTSQGHLLISGQASNLKKMNTAVELAKAYAA 159

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------TGS 222
            +  ++  ++    V+N++ + G+ QV L+V IAEV+R++ +Q   +  I       +G 
Sbjct: 160 AASVSKVKST----VLNMMTVGGDHQVMLEVVIAEVQREVARQFDSKFFIFNKGSKMSGG 215

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +G   SF  D      S G  F  + + D       L   ++    + LAEPT+TA+SG
Sbjct: 216 VAGRGGSFDLDPAAAIDSRG--FFARYLNDNLMMNFALDVAKQNGLAKILAEPTVTALSG 273

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-- 340
           QSA F SGG+     V    G+T++   D+GV + F PTVL  G+I L +   VSE    
Sbjct: 274 QSAEFLSGGEFPIP-VPGINGSTTIQYRDFGVGVRFVPTVLDSGQINLNLNVIVSEISNV 332

Query: 341 --IGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             + ++ G       +PS   R   TTVEL  G TI ++GL+ D +++  + +P L  IP
Sbjct: 333 HSVSLSGGGSNATLIVPSIVKRTTSTTVELADGQTIAISGLISDTLRENIDKLPGLGDIP 392

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           ILG LF +  F   ++E+ I  TP LV+P   + +S P D + +  D + +   +++   
Sbjct: 393 ILGQLFTSKSFKSGQSELVILVTPRLVRPFNRKHISLPTDDFVLPSDMEFYLLGKMSHKK 452

Query: 453 GPKEASEVE 461
              + S   
Sbjct: 453 QNSQRSGTP 461


>gi|300021854|ref|YP_003754465.1| type II and III secretion system protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523675|gb|ADJ22144.1| type II and III secretion system protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 550

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 184/538 (34%), Positives = 268/538 (49%), Gaps = 77/538 (14%)

Query: 10  TMMSIFLFSSNPSVAKL--------------PPIKEANAAVINISDVE-IGKGKKISIGL 54
            + +  L S+ P+ A+               P   +   +++ IS+ E +   K I IGL
Sbjct: 17  MVFAAVLTSAAPTSAQSRAADRLSVRADRGDPEFSKNTQSIVRISESEGLPVRKSIKIGL 76

Query: 55  NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114
            K ++++ P  V+DV+ S+P   D VV S   ++L GK  GQ+N     + G+Q+  +++
Sbjct: 77  GKSVLIEFPNGVRDVMASNPAVVDAVVLSSNRVFLLGKAPGQSNAFFFSNKGEQLALIEL 136

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
            ++++   LEM LRR I  S I+VE ++ T +L G V++  DS RA  ++  F+SQ   N
Sbjct: 137 NVDQEGDGLEMLLRRVIPGSEIKVETLNQTAILTGRVKSPSDSARASRIAAQFMSQMIAN 196

Query: 175 QYANSS--------------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
             +N S                     K V+NLL +  E+QV LKVT+AEV+R +LKQ+G
Sbjct: 197 WASNVSLTSSGSGQQNKAGEVKDADDVKSVINLLTVEAEEQVMLKVTVAEVKRTLLKQLG 256

Query: 215 FQHSITGSSS--------------------GPSKSFAADFGGKFV------------SEG 242
                  SS                     G   +F                        
Sbjct: 257 INLGGVLSSGSFSTTLLTENAFPISTAQGLGSLPTFGVGTAASAACAVGQICAFNPGPAT 316

Query: 243 GDFSVKGVLD-----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           G F   G++      R + ++ + ALER   I+TLAEP LTAISG+ A F +GG+  Y T
Sbjct: 317 GAFGNSGLVSGWGNSRNNIQSAVRALERDGLIKTLAEPNLTAISGEPAEFLAGGEVPYVT 376

Query: 298 -VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
            V + TG ++V    +GV L FTP VL+ GRI L+I T VS+    V     P +  R+A
Sbjct: 377 GVDTQTGVSAVAFKKFGVQLAFTPVVLTEGRISLKIDTSVSDISQYVAGN--PVFDTRQA 434

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T VELPSGG++ LAGL+    QQ  +G+P    IPILG LFR+  F  +E+E+ +  TP
Sbjct: 435 KTVVELPSGGSLALAGLISTKTQQNIDGLPGAKDIPILGTLFRSRDFQNDESELVVIVTP 494

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +LV+PVA + LS P D      D KA F   +N+IYG  E     G   KG  GFI +
Sbjct: 495 YLVQPVARQQLSAPTDGLYPATDLKADFLGHLNRIYGKSEVQPSGG--LKGDYGFIVE 550


>gi|303248302|ref|ZP_07334564.1| type II and III secretion system protein [Desulfovibrio
           fructosovorans JJ]
 gi|302490327|gb|EFL50239.1| type II and III secretion system protein [Desulfovibrio
           fructosovorans JJ]
          Length = 528

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 135/492 (27%), Positives = 225/492 (45%), Gaps = 75/492 (15%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           AA   +  V +    ++S+ + K +ILQ   DV  V V+ P  AD V+ SPR +Y+ G+ 
Sbjct: 28  AAPGRMGTVAVRTAPRLSLTIGKSVILQSDADVSRVSVAQPEIADFVLLSPRQIYVTGRA 87

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVR 152
            G  N+ L     K     D+ +  DI+ L+  L   +   + I V    D++ L G VR
Sbjct: 88  PGITNLTLWDKGDKVRAVYDLDVAPDISRLKKMLHDVMPGESGIEVMSSQDSIALSGTVR 147

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
              + ++A+ L+E +            + KKV+NLL++ G  QV L+V +AE+ + ++ +
Sbjct: 148 DSANMKKALALAEVY------------APKKVLNLLSVGGVQQVMLEVRVAEMSKSLVNR 195

Query: 213 IGFQHSITGSSS------GPSKSFAADFGGKF-----------VSEGGDFSVK------- 248
           +G   +  G  +      G   S A+     +            +  GD +         
Sbjct: 196 MGINLNAVGDGNFAYTLIGSLSSVASGMFDTYYPQNAYQYITMTANSGDGNSSFDSTPIQ 255

Query: 249 ------------------------------GVLDRFSFETVLHALERATAIRTLAEPTLT 278
                                         G     +   V+  L++   ++ LAEP L 
Sbjct: 256 LAYREFNQPSSKATMSFNQGTAVARWNTNFGGAGNTAMTAVVDMLKQNGLVKILAEPNLV 315

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            ++GQSA F +GGQ     VSS  G TS+    +GV L+FTPTV++  RI L++  EVS 
Sbjct: 316 CLNGQSADFLAGGQIPVP-VSSGLGTTSIEWKKFGVQLNFTPTVVAGDRINLKVNPEVSN 374

Query: 339 P----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                 I +    +P+   R+  TT+EL +G T  +AG+L +  +   +  P+L  IP+L
Sbjct: 375 LDYTRAITLLGSTVPAINTRQTSTTIELKNGQTFAIAGMLNEQSRDSMDKYPVLGDIPVL 434

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
           GALF++S++ +++TE+ I  T  LVKP+  + +S P D     DD + F     +     
Sbjct: 435 GALFKSSQYQKDQTELVILITAHLVKPLDKKAISLPTDSAHEPDDLEFFLGISRD---AK 491

Query: 455 KEASEVEGQNYK 466
            +A   +GQ+  
Sbjct: 492 SDAGAAQGQSLS 503


>gi|323491532|ref|ZP_08096711.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
 gi|323314108|gb|EGA67193.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
          Length = 485

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 116/448 (25%), Positives = 206/448 (45%), Gaps = 27/448 (6%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
           ++      GK + +  +K   + +    + V + DP   D+V+     ++L GK +G  N
Sbjct: 17  VTYAASQSGKVVKVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDELFLIGKKLGSTN 76

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G+ + +++I +  D+  L+  L  F+ + +I V    + ++L G +       
Sbjct: 77  LMAWDSRGQLIESINIEVTHDLNSLKAKLFEFLPNESIEVHSAQNRLILSGQISNQAAMN 136

Query: 159 RAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            A+ ++ET+ +    ++   S SK+     V+NL+ I G  QV L+VT+AEV+R ++++ 
Sbjct: 137 IALRVAETYSAGRQADKENKSLSKQAEKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKF 196

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVS--------EGGDFSVKGVL--DRFSFETVLHAL 263
               +   SS    K      G               GD+ + G        F   L   
Sbjct: 197 DANFAFFQSSGSKFKWGGTSTGATVPGATPIFEAPSTGDYGILGSFIDGNTLFTFALDVA 256

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
            +    + LAEP LTA+SG  A F +GG+             ++   +YGV L F PTVL
Sbjct: 257 RQNGTAKVLAEPNLTALSGSKAEFLAGGEFPIPVP--DEDGITIEYKEYGVGLKFIPTVL 314

Query: 324 SPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           S  +I L +  +VSE          P    +   +P    R A +T+EL  G TI +AGL
Sbjct: 315 SDKKINLNLAVDVSEIANSSSLTLSPGSTNSTYIIPPITRRSASSTLELADGQTIGIAGL 374

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L ++++ +   +P  S IPILG +F +  +   ETE+ I  TP L +P+    ++ P D 
Sbjct: 375 LSENVRDVANEMPGFSDIPILGQMFNSQEYVSGETELVILVTPRLAQPIDRNKVTLPTDS 434

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           +   +D + +   R + +    +AS+ +
Sbjct: 435 FVEPNDFEYYLLGRGSYLAPASQASQAK 462


>gi|172062959|ref|YP_001810610.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
 gi|171995476|gb|ACB66394.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
          Length = 460

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 224/488 (45%), Gaps = 43/488 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M  + R         + +   ++A+     +A              G  +SI   K  +L
Sbjct: 1   MVRMVRWIAVWCLACIVAPGVALAQRAHAADA--------------GAPLSIATGKGEML 46

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +      + V+DP+ AD+ V SPRT+++FGK  G   +I +G + + +L   ++++ D 
Sbjct: 47  SLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQVDT 106

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           A L+  L        + V     ++++ G V +  D+   ++    +L+           
Sbjct: 107 ASLQTVLDSRFPQLKLAVSGAPGSLMVSGKVPSAADADAVMQSLTPYLNDK--------- 157

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--- 237
            ++++N L ++   QV L+V + EV R++ +Q+G   S  G++                 
Sbjct: 158 -ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLGINWSSLGAAGNFIGGLFNGRTLMDPT 216

Query: 238 ----FVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                +S  G +SV G     R+S + VL AL++   I  LAEP LTA+SGQ+ASF +GG
Sbjct: 217 TKLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGQTASFLAGG 276

Query: 292 QHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345
           +         ++TGA +V    +GV L FTPTVL+  RI L+++ EVSE      +    
Sbjct: 277 EIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVLADNRISLKVRPEVSEVDANNSVTTGG 336

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P   VR+ +TTVEL SG +  + GLL+         IP L ++PI+G LF +  F  
Sbjct: 337 VTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTANTVSQIPGLGRLPIIGRLFSSKNFQD 396

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
            +TE+ +  TP++V+P     L +  D  +       F   R   +      +       
Sbjct: 397 NKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSDLEFAVQRNLGLDLMSGETPRP---- 452

Query: 466 KGAIGFIY 473
            GA GF+Y
Sbjct: 453 VGAAGFVY 460


>gi|115358171|ref|YP_775309.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
 gi|115283459|gb|ABI88975.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
          Length = 460

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 128/458 (27%), Positives = 215/458 (46%), Gaps = 29/458 (6%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
            A    +      +  G  +SI   K  +L +      + V+DP+ AD+ V SPRT+++F
Sbjct: 17  VAPGVALAQRAHAVEAGATLSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVF 76

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           GK  G   +I +G + + +L   ++++ D   L+  L        + V     ++++ G 
Sbjct: 77  GKKAGTTTLIALGANHRPILRKTVIVQVDTVSLQAVLDSRFPQLKLSVSGAPGSLMVSGK 136

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           V +  D+   ++    +L+            ++++N L ++   QV L+V + EV R++ 
Sbjct: 137 VPSAADADAVMQSLAPYLNDK----------ERIVNRLTLSRPIQVNLRVRVTEVSRNVT 186

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGK-------FVSEGGDFSVKGVL--DRFSFETVLH 261
           +Q+G   S  G++                      +S  G +SV G     R+S + VL 
Sbjct: 187 QQLGINWSSLGAAGNFIGGLFNGRTLMDPTNRLFNLSPTGAYSVLGGFHTGRWSIDVVLD 246

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFT 319
           AL++   I  LAEP LTA+SGQ+ASF +GG+         ++TGA +V    +GV L FT
Sbjct: 247 ALDQEGLITMLAEPNLTAMSGQTASFLAGGEIPIPVAQAGNTTGAITVEFKPFGVSLDFT 306

Query: 320 PTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PTVL+  RI L+++ EVSE      +      +P   VR+ +TTVEL SG +  + GLL+
Sbjct: 307 PTVLADNRISLKVRPEVSEVDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQ 366

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
                    IP L ++PI+G LF +  F   +TE+ +  TP++V+P     L +  D  +
Sbjct: 367 SQTANTVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVA 426

Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
                  F   R   +      +        GA GF+Y
Sbjct: 427 RPSSDLEFAVQRNLGLDLMSGETPRP----VGAAGFVY 460


>gi|254506750|ref|ZP_05118890.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus
           16]
 gi|219550331|gb|EED27316.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus
           16]
          Length = 487

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 119/455 (26%), Positives = 212/455 (46%), Gaps = 34/455 (7%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           +      GK + +  +K   + +    + V + DP   D+V+     ++L GK +G  N+
Sbjct: 18  ATAATQSGKIVKVPHHKSTHVTLAGKAKRVSLGDPEVLDIVMLKSDEVFLIGKKLGSTNL 77

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           +     G+ + +++I +  D+  L+  L  F+ +  I+V    + ++L G + +      
Sbjct: 78  MAWDRRGQLIESINIEVTHDLNSLKAKLYEFLPNEEIKVHSAQNRLILSGQISSQSAMNI 137

Query: 160 AVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           A+ ++ET+ +    ++   S S++     V+NL+ I G  QV L+VT+AEV+R ++++  
Sbjct: 138 ALRVAETYSAGQEVDKENKSLSEQVQKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRK-- 195

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFETVLH-------A 262
           F  +     S  S S+     G  + + G      F+  G+       T +        A
Sbjct: 196 FDSNFHFFESNGSFSWGGTSAGAIIDDVGGGIGPIFNTPGIDSTGLLGTFIDGDTLFTFA 255

Query: 263 LE---RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L+   +    + LAEP LTA+SG  A F +GG+             ++   +YGV L F 
Sbjct: 256 LDIAKQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DENGITIEYKEYGVGLKFI 313

Query: 320 PTVLSPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           PTVLS   I L +  +VSE          P    +   +P    R A +T+EL  G TI 
Sbjct: 314 PTVLSDKNINLNLAVDVSEIANTSSLTLSPGGTNSTYVIPPITRRSASSTLELADGQTIG 373

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           +AGLL ++++ +  G+P  S IP+LG +F +  +   ETE+ I  TP L KP+    +S 
Sbjct: 374 IAGLLSENVRDVVSGMPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRNRVSL 433

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           P D +   +D + +   R   I    ++   + Q+
Sbjct: 434 PTDSFVEPNDFEYYLLGRGAYIAPSNQSRPQDVQD 468


>gi|170703887|ref|ZP_02894570.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
 gi|170131202|gb|EDS99846.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
          Length = 460

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 224/488 (45%), Gaps = 43/488 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M  + R         + +   ++A+     +A              G  +SI   K  +L
Sbjct: 1   MVRMVRWIAFWCLACIVAPGVALAQRAHAADA--------------GAPLSIATGKGEML 46

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +      + V+DP+ AD+ V SPRT+++FGK  G   +I +G + + +L   ++++ D 
Sbjct: 47  SLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQVDT 106

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           A L+  L        + V     ++++ G V +  D+   ++    +L+           
Sbjct: 107 ASLQTVLDSRFPQLKLAVSGAPGSLMVSGKVPSAADADAVMQSLTPYLNDK--------- 157

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--- 237
            ++++N L ++   QV L+V + EV R++ +Q+G   S  G++                 
Sbjct: 158 -ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLGINWSSLGAAGNFIGGLFNGRTLMDPT 216

Query: 238 ----FVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                +S  G +SV G     R+S + VL AL++   I  LAEP LTA+SGQ+ASF +GG
Sbjct: 217 TRLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGQTASFLAGG 276

Query: 292 QHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345
           +         ++TGA +V    +GV L FTPTVL+  RI L+++ EVSE      +    
Sbjct: 277 EIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVLADNRISLKVRPEVSEVDANNSVTTGG 336

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P   VR+ +TTVEL SG +  + GLL+         IP L ++PI+G LF +  F  
Sbjct: 337 VTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTANTVSQIPGLGRLPIIGRLFSSKNFQD 396

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
            +TE+ +  TP++V+P     L +  D  +       F   R   +      +       
Sbjct: 397 NKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSDLEFAVQRNLGLDLMSGETPRP---- 452

Query: 466 KGAIGFIY 473
            GA GF+Y
Sbjct: 453 VGAAGFVY 460


>gi|170750189|ref|YP_001756449.1| type II and III secretion system protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656711|gb|ACB25766.1| type II and III secretion system protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 546

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 152/498 (30%), Positives = 248/498 (49%), Gaps = 55/498 (11%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
             A V+ +   E    +++ +   + +I+ +P D ++V V++P  A+ VV S R +++ G
Sbjct: 49  GPAPVLTVGAAEANTTRRVELTAGRSVIVDLPRDAKEVFVANPAVANAVVRSTRKVFVIG 108

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIA--HLEMTLRRFIADSNIRVEMVSDTVVLHG 149
              G  ++ ++  +G+Q+  LD+ + RD+    L   L + I      V     +V+L G
Sbjct: 109 MADGATSIFIMDAEGRQIAALDVTVARDLNLGTLRELLSQSIPGGRFDVRSSGASVLLSG 168

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANS----------SSKKVMNLLNIAGEDQVTLK 199
            V +  D+Q+A++++  F+   G      +          S   V+N L I  +DQV L+
Sbjct: 169 AVNSSSDAQQAIDIANAFVGLGGGGAAGPAGAASGGVAAGSRGAVINNLTIRNKDQVMLR 228

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKF------------------- 238
           VT+ EV R++LKQ G   +   S+  P  +       GG                     
Sbjct: 229 VTVVEVSRNVLKQFGINMAGNWSALNPVGNLGQTVVNGGTAAATQVPAYLPNVITNNLPF 288

Query: 239 -----VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                   G           FS +  L A E+A   R LAEPTLTAISG++A F +GG+ 
Sbjct: 289 PINTNTPSGNLIQASVQGGGFSLQATLKAFEQAGVSRILAEPTLTAISGEAAKFLAGGEF 348

Query: 294 LYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--------VI 341
                ++       +  +T   YGV L FTPTVL+  RI +R+ T+V+E         VI
Sbjct: 349 AVPASATCAVGGVCSPGITYKPYGVALSFTPTVLADNRISIRVATDVTEIDTQQSFSYVI 408

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G  +  +P  RVR+++TTVELPSGG ++ AGL++   +Q   G+P L  +PILGALFR+ 
Sbjct: 409 GNTSVAVPGTRVRRSETTVELPSGGVMMTAGLIQQFNKQAIAGLPGLINLPILGALFRSR 468

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
            + R+ETE+ I  TP++ +P+  + +SRPDD++    D +     ++N+IYG        
Sbjct: 469 DYQRQETELMIMCTPYIARPMEPKQVSRPDDNFVDASDGQTVLLGQINRIYGKVAPPGAT 528

Query: 462 -----GQNYKGAIGFIYK 474
                G+ Y+G +GFI +
Sbjct: 529 AAAPLGRAYRGRVGFIVE 546


>gi|27365106|ref|NP_760634.1| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus
           CMCP6]
 gi|27361252|gb|AAO10161.1| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus CMCP6]
          Length = 488

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 118/449 (26%), Positives = 202/449 (44%), Gaps = 30/449 (6%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
               GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N++  
Sbjct: 21  ATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTNLMAW 80

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
              G  + +++I +  D+  L+  L  F+ +  I+V    + ++L GMV T +    A+ 
Sbjct: 81  DSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMNIALR 140

Query: 163 LSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           ++ET+ +    ++   S + +     V+NL+ I G  QV L+VT+AEV+R ++++     
Sbjct: 141 VAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNF 200

Query: 218 SI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH-------ALE--- 264
                 GS S  + S            G  F+V G+       T +        AL+   
Sbjct: 201 HFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFALDIAK 260

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                + LAEP LTA+SG  A F +GG+       S     ++   +YGV L F PT+LS
Sbjct: 261 ENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSD--GVTIEYKEYGVGLKFVPTILS 318

Query: 325 PGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             RI L +  +VSE                +  +P    R A +T+EL  G TI +AGLL
Sbjct: 319 DKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGIAGLL 378

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            ++++ +   +P    IP+LG LF +  +   ETE+ I  TP L KP+    ++ P D +
Sbjct: 379 SENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLPTDAF 438

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
               D K +       I      +    Q
Sbjct: 439 VEPSDLKYYLLGVGAYIAESPTNANAAAQ 467


>gi|114568970|ref|YP_755650.1| type II and III secretion system protein [Maricaulis maris MCS10]
 gi|114339432|gb|ABI64712.1| type II and III secretion system protein [Maricaulis maris MCS10]
          Length = 491

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 150/482 (31%), Positives = 259/482 (53%), Gaps = 39/482 (8%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           P  A+    +  N   + I +   G   + + + L+K  ++ +PVDV DVLV++P   + 
Sbjct: 21  PVAAQPAGTERGNTMQVYIREPGNGPVSETLDLPLSKAAVVHLPVDVADVLVTNPAVVEA 80

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
           +V +PR  Y+ G  +GQ N      +G+ +L+LD+ +ERD++ L+ ++ RF+ ++ I VE
Sbjct: 81  IVRTPRRAYIMGMGIGQTNAFFFDANGQLILDLDLRVERDLSPLQESIDRFLPNARIEVE 140

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
            ++D +VL G   +  D+  A+ +++ ++           +   +++++++   +QV L+
Sbjct: 141 AMNDHIVLSGRAPSASDADAALRIAQRWVD----------NPDNILSMISVEAREQVMLR 190

Query: 200 VTIAEVRRDILKQIGFQHSITGSSS--GPSKSFAADFG--GKFVSEGG---DFSVKGVLD 252
           V I E++R I++Q+G   S  G++   G   S + DF   G+F+       D+       
Sbjct: 191 VRIVEMQRTIVRQLGVNLSTAGTTGEFGFGVSTSPDFSRVGRFLGGTSAMLDWVSGNTGG 250

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             S   +L A+ER   +RTLAEP LTAI+G+SA+F +GG+          G   +    +
Sbjct: 251 VESVSAMLQAMERVGLVRTLAEPNLTAITGESANFLAGGEFPVPVGRDRDGNIIIEYKPF 310

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVS--------------------EPVIGVNAGDMPSYR 352
           GV L FTP VLS GRI LRI TEVS                      +  V    +P+  
Sbjct: 311 GVGLGFTPVVLSEGRISLRISTEVSELTSQGSLTFQSNNVLDDDGNVIGTVPGLTIPALN 370

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           V +A+TTVELPSGG++VLAGL++++ +Q  +G+P +  +P+LG+LFR+  +  +ETE+ +
Sbjct: 371 VNRAETTVELPSGGSLVLAGLIQEETRQNLDGVPGVQNLPVLGSLFRSRDYENQETELVV 430

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             TP+LV P     L  P D +    +A    F R+N+ Y     S+   + + G +GF+
Sbjct: 431 LVTPYLVDPTNPNQLQTPADGFRNASEASGLLFGRINRAYSVPG-SDTGDRGWSGPVGFL 489

Query: 473 YK 474
           ++
Sbjct: 490 FE 491


>gi|167719684|ref|ZP_02402920.1| type II/III secretion system protein [Burkholderia pseudomallei
           DM98]
 gi|167902788|ref|ZP_02489993.1| type II/III secretion system protein [Burkholderia pseudomallei
           NCTC 13177]
          Length = 448

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + 
Sbjct: 23  GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 82

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +L   ++++ D   L+  L        + +     ++++ G V +  D+   V+  + 
Sbjct: 83  RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 142

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +L Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S   
Sbjct: 143 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 192

Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277
                     F        +S  G FSV G     R+S + VL AL++   I  LAEP L
Sbjct: 193 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 252

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVS
Sbjct: 253 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 312

Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             +P   V  G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+
Sbjct: 313 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 372

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R   I  
Sbjct: 373 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 430

Query: 454 PKEASEVEGQNYKGAIGFIY 473
             +    +     G  GF+Y
Sbjct: 431 --DPLGGDAPRLAGPAGFVY 448


>gi|37680844|ref|NP_935453.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
 gi|37199593|dbj|BAC95424.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
          Length = 488

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 118/449 (26%), Positives = 202/449 (44%), Gaps = 30/449 (6%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
               GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N++  
Sbjct: 21  ATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTNLMAW 80

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
              G  + +++I +  D+  L+  L  F+ +  I+V    + ++L GMV T +    A+ 
Sbjct: 81  DSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMNIALR 140

Query: 163 LSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           ++ET+ +    ++   S + +     V+NL+ I G  QV L+VT+AEV+R ++++     
Sbjct: 141 VAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNF 200

Query: 218 SI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH-------ALE--- 264
                 GS S  + S            G  F+V G+       T +        AL+   
Sbjct: 201 HFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFALDIAK 260

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                + LAEP LTA+SG  A F +GG+       S     ++   +YGV L F PT+LS
Sbjct: 261 ENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSD--GVTIEYKEYGVGLKFVPTILS 318

Query: 325 PGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             RI L +  +VSE                +  +P    R A +T+EL  G TI +AGLL
Sbjct: 319 DKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGIAGLL 378

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            ++++ +   +P    IP+LG LF +  +   ETE+ I  TP L KP+    ++ P D +
Sbjct: 379 SENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLPTDAF 438

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
               D K +       I      +    Q
Sbjct: 439 VEPSDLKYYLLGVGAYIAESPTNANATAQ 467


>gi|116748930|ref|YP_845617.1| type II and III secretion system protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697994|gb|ABK17182.1| type II and III secretion system protein [Syntrophobacter
           fumaroxidans MPOB]
          Length = 482

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 138/486 (28%), Positives = 214/486 (44%), Gaps = 32/486 (6%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
             R               S+  +       A  + +   E    +KI + + K +I++  
Sbjct: 2   CSRLGLVGFVKASMVLAFSLVLISSSALHAAGPVKVVTGEHA-ARKIHLQVGKSVIVRSG 60

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
             V    +  P  AD+V  SP  +Y+ GK  G  N+ L   D K     DI +  D   L
Sbjct: 61  APVVRTTLGSPDVADIVALSPTQIYITGKATGVTNLTLWQSDDKVSAIYDIEVAPDTMRL 120

Query: 124 EMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           +  L   +     I+V    D++ L G + +     +A+ L+E +           S  K
Sbjct: 121 KEKLHEVLPGERDIKVSASHDSLTLSGTISSSTHLAQAMTLAEAY-----------SGGK 169

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--HSITGSSSGPSKSFAAD---FGGK 237
           KV+NLL ++G  QV L+V +AE+ R +  ++G     ++ GS         A    F G 
Sbjct: 170 KVINLLQVSGVHQVMLEVRVAEMSRTLTNRLGINSIWNVNGSMGASLLGNLASLDKFAGS 229

Query: 238 FVSEGGDFSVKGVLDR--------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                 +F+    ++         F++   + AL+    ++ LAEPTL A+SGQSASF +
Sbjct: 230 ASGSSSEFTFAPTVNSLFHILGGPFTWTAFIDALKEDGLVKVLAEPTLIAMSGQSASFLA 289

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNA 345
           GG+     V    G   +    +GV L FTPTVL+  R+ + +  EVSE      I +  
Sbjct: 290 GGEFPIP-VPQGLGTVGIEYKQFGVSLAFTPTVLNDKRMNIIVAPEVSELDYTTAINIAG 348

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P    RK  T +EL  G +  +AGLLKD I++  +  P+L  IP+LGALFR+  F R
Sbjct: 349 VAVPGLTTRKVSTAIELNDGQSFAIAGLLKDTIREDAKKFPILGSIPVLGALFRSVSFQR 408

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
            ETE+ +  TP L KP+ +     P D +    D++ FF   +     PK A        
Sbjct: 409 NETELIVIVTPRLAKPIDVATQPLPTDKFIEPSDSEFFFLGLLQG-RAPKPAPRAPLPIT 467

Query: 466 KGAIGF 471
               GF
Sbjct: 468 DKKAGF 473


>gi|167841781|ref|ZP_02468465.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 433

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 128/444 (28%), Positives = 214/444 (48%), Gaps = 27/444 (6%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
                  +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +
Sbjct: 4   AAEPAPVLAVPAGGGEMVKLPEPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFAL 63

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
           G + + +L   ++++ D   L+  L       ++ +     ++++ G V +  D+    +
Sbjct: 64  GANNRTILRETVVVDVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVAQ 123

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             + +L Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  G+
Sbjct: 124 TLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGA 173

Query: 223 SSGPSKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLA 273
           S             F        +S  G FSV G     R+S + VL AL++   I  LA
Sbjct: 174 SGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVLGGFHTSRYSIDGVLDALDQEGLITMLA 233

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           EP LTAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+++
Sbjct: 234 EPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVR 293

Query: 334 TEVS--EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            EVS  +P   V  G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+
Sbjct: 294 PEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLA 353

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           ++P+LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R  
Sbjct: 354 RLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELHDALDDVTRPSSDIEFVLQRSL 413

Query: 450 KIYGPKEASEVEGQNYKGAIGFIY 473
            I    +    +     G  GF+Y
Sbjct: 414 GI----DPLGGDAPRLAGPAGFVY 433


>gi|315497465|ref|YP_004086269.1| type II and iii secretion system protein [Asticcacaulis excentricus
           CB 48]
 gi|315415477|gb|ADU12118.1| type II and III secretion system protein [Asticcacaulis excentricus
           CB 48]
          Length = 476

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 144/466 (30%), Positives = 239/466 (51%), Gaps = 20/466 (4%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           +   V   P    A  + + +     G   + +++   +  ++ +PVD  DV VS+P  A
Sbjct: 21  AVSGVEAAPKPYSAPVSPMTVQTQTSGARTQVLNLAKGRSAVVDLPVDAADVFVSNPAVA 80

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           D V+ +PR +++ G   GQ++ I     G+Q+LNL I +      L  T+++    S+++
Sbjct: 81  DAVLRTPRRIFVLGVAAGQSDAIFFDATGRQILNLQIRVGVSTDQLSDTVQKLYPQSDVQ 140

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           V+ V+  V+L G+V    +S+    LS  F  +           + ++N+L++AG+DQV+
Sbjct: 141 VQSVNGYVILSGVVANASESEAIQRLSVAFAEK----------PENIINMLSVAGKDQVS 190

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           LKV I EV++  +KQ+GF  +     +G  +    +      +      +K         
Sbjct: 191 LKVRIVEVQKSSIKQMGFNFNGLSGQTGEVQYALQNAPTYGTNGKALGGMKIGYADKLLS 250

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
             L A ER   +RTLAEP L A+SG+SA F +GG+        + G  +V    YGV L 
Sbjct: 251 ASLQAFERVGLVRTLAEPNLAAVSGESAKFLAGGEFPVPVAKDTQGRVTVEFKTYGVGLG 310

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVELPSGGTIVLAG 372
           FTP VLS G I L++ TEVSE V   +        +P   VR+A+TTVELPSGG++++AG
Sbjct: 311 FTPVVLSNGTISLKLSTEVSEIVNTGSFSLDDTFTIPGLSVRRAETTVELPSGGSLMIAG 370

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           LL+   +Q  + +P ++ IP+LGALFR+  F  E+TE+ +  TP+++   +      P D
Sbjct: 371 LLQSKYKQSIDALPGMTTIPVLGALFRSRDFLDEQTEMVVIVTPYIISAKSPDAFQTPAD 430

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI----GFIYK 474
           ++ V  D ++ F  R+NK    K     E     G+     G++ +
Sbjct: 431 NFQVASDLESVFLGRLNKSVRAKRGEVAEAPPLAGSYQAPIGYVIE 476


>gi|167581961|ref|ZP_02374835.1| type II/III secretion system protein [Burkholderia thailandensis
           TXDOH]
          Length = 441

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 131/453 (28%), Positives = 216/453 (47%), Gaps = 27/453 (5%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           AAV             +++      ++++P     V V+DP  ADV V +P+ +++ GK 
Sbjct: 3   AAVEPRLARAAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKK 62

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G   +  +G + + +L   +++  D   L+  L       ++ +     ++++ G V +
Sbjct: 63  AGTTTLFALGANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPS 122

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D+   V+  + +L Q           + ++N L +A   QV L+V I EV R+I +Q+
Sbjct: 123 AADADAVVQTLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQL 172

Query: 214 GFQHSITGSSSGPSKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALE 264
           G   S  G+S             F        +S  G FSV G      +S + VL AL+
Sbjct: 173 GINWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALD 232

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           +   I  LAEP LTAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+
Sbjct: 233 QEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLA 292

Query: 325 PGRIGLRIQTEVS--EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
             RI L+++ EVS  +P   V  G +  P+  VR+ DTTVEL SG +  + GLL+     
Sbjct: 293 DNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSD 352

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           +   +P L+++P+LG LF +  +  ++TE+ +  TP++V+P    +L    D  +     
Sbjct: 353 VLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSD 412

Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
             F   R   I    +    +     G  GF+Y
Sbjct: 413 IEFVLQRSLGI----DPLGGDAPRLTGPAGFVY 441


>gi|320155489|ref|YP_004187868.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus MO6-24/O]
 gi|319930801|gb|ADV85665.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus MO6-24/O]
          Length = 488

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 118/449 (26%), Positives = 202/449 (44%), Gaps = 30/449 (6%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
               GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N++  
Sbjct: 21  ATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTNLMAW 80

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
              G  + +++I +  D+  L+  L  F+ +  I+V    + ++L GMV T +    A+ 
Sbjct: 81  DSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMNIALR 140

Query: 163 LSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           ++ET+ +    ++   S + +     V+NL+ I G  QV L+VT+AEV+R ++++     
Sbjct: 141 VAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNF 200

Query: 218 SI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH-------ALE--- 264
                 GS S  + S            G  F+V G+       T +        AL+   
Sbjct: 201 HFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFALDIAK 260

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                + LAEP LTA+SG  A F +GG+       S     ++   +YGV L F PT+LS
Sbjct: 261 ENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSD--GVTIEYKEYGVGLKFVPTILS 318

Query: 325 PGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             RI L +  +VSE                +  +P    R A +T+EL  G TI +AGLL
Sbjct: 319 DKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGIAGLL 378

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            ++++ +   +P    IP+LG LF +  +   ETE+ I  TP L KP+    ++ P D +
Sbjct: 379 SENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLPTDAF 438

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
               D K +       I      +    Q
Sbjct: 439 VEPSDLKYYLLGVGAYIAESPTNANAAVQ 467


>gi|261252087|ref|ZP_05944660.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
 gi|260935478|gb|EEX91467.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
          Length = 480

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 212/460 (46%), Gaps = 34/460 (7%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
           IS      GK +++  +K   + +    + V + DP   D+V+     ++L GK +G  N
Sbjct: 10  ISFAATQSGKIVTVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDEVFLIGKKLGSTN 69

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G+ + +++I +  D+  L+  L  F+ D  I+V      ++L G V +     
Sbjct: 70  LMAWDSRGQLIESINIEVTHDLNSLKAKLFEFLPDEEIKVHSAQHRLILSGQVSSQSVMN 129

Query: 159 RAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            A+ ++ET+ +    ++  +S S +     V+NLL I G  QV L+VT+AEV+R ++++ 
Sbjct: 130 IALRVAETYSAGKEADKGKSSLSNQVNSTGVINLLTIGGAQQVMLEVTVAEVQRTLVRKF 189

Query: 214 GFQHSITGSSSGPSKSFAADFGGKF----VSEGGDFSVKGVLDRFSFETVLH-------A 262
                   +S G         GG         G  F+  GV       T +        A
Sbjct: 190 DANFHFFQTSGGEFSWGGTSAGGVIDDVNNVIGPIFNAPGVESTGLLGTFIDSNTLFTFA 249

Query: 263 LE---RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L+   +    + LAEP LTA+SG  A F +GG+      S      ++   +YGV L F 
Sbjct: 250 LDIAKQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVPSED--GITIEYKEYGVGLKFI 307

Query: 320 PTVLSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           PTVLS  +I L +  +VS           P        +P    R A +T+EL  G TI 
Sbjct: 308 PTVLSDKKINLNLAVDVSELATSTTLTLNPGATNGTYVIPPITRRSASSTLELADGQTIG 367

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           +AGLL ++++ + E +P  S IP+LG +F +  +   ETE+ I  TP L KP+  R ++ 
Sbjct: 368 IAGLLSENVRDVVEEMPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRRRITL 427

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
           P + +   +D + +   R   I     ASE + +   G+ 
Sbjct: 428 PTESFVEPNDFEYYLLGRGAYI---APASEQKSEQEVGSF 464


>gi|308050059|ref|YP_003913625.1| type II and III secretion system protein [Ferrimonas balearica DSM
           9799]
 gi|307632249|gb|ADN76551.1| type II and III secretion system protein [Ferrimonas balearica DSM
           9799]
          Length = 487

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 116/410 (28%), Positives = 197/410 (48%), Gaps = 19/410 (4%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
            + ++K   + +    + V V +P  AD+++ +P+ +Y+ G+ +G  N+++     + + 
Sbjct: 49  PVPIHKSKTMSLANAAERVSVGNPAIADILLINPKELYILGRQLGSTNIMVWDDQDRLVD 108

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
            +DI I  D+  L+  L RF+ D  I V      +V+ G V  +     A++L+  +   
Sbjct: 109 IVDIEITHDLNGLKEKLHRFLPDEPIEVHSSQGQLVIGGQVSNLDRMNMALDLAHGYAVA 168

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
           +  +     ++  V+NL+++ G  QV L+VT+ EV+R++ + +    ++     G     
Sbjct: 169 ANNSD----NTSTVLNLMSVGGGHQVMLEVTVTEVQRELARTLDSDFALVFE--GSDFIG 222

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
               G   +S  G F    V     F+  +   ++    R LAEP LT +SGQ A F SG
Sbjct: 223 GLLGGDGLISNKGIFG-SYVSGDVLFDFAIDMAKQQGLARVLAEPNLTTMSGQMAEFLSG 281

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----------PV 340
           G+            T++   ++GV + F PTVL  GRI L +   VSE          P 
Sbjct: 282 GEFPIPVP--DRDGTTIEYKEFGVGVKFVPTVLDSGRINLNLNVLVSELSNANAVGVIPE 339

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               A   PS   R A++T+EL  G TI +AGLL   +++  + +P L +IP+LG LF +
Sbjct: 340 GSTTALVTPSITKRSANSTIELGDGQTIAIAGLLSSTVRESMDELPGLGEIPVLGQLFSS 399

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
             +   ETE+ I  TP LV+PV    L  P D +    D   +   R++K
Sbjct: 400 QEYRNGETELVILVTPRLVRPVDREKLVLPTDGFVDPTDLGFYLMGRLSK 449


>gi|292491519|ref|YP_003526958.1| type II and III secretion system protein [Nitrosococcus halophilus
           Nc4]
 gi|291580114|gb|ADE14571.1| type II and III secretion system protein [Nitrosococcus halophilus
           Nc4]
          Length = 565

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 130/527 (24%), Positives = 228/527 (43%), Gaps = 79/527 (14%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           ++  F  +S       P     +  +I  SD+E        + L K  ++++    + + 
Sbjct: 28  IIVFFSLTSLALAQTSPLTPRQSENLIIQSDIE----GDFQVPLYKSGVIELEERAKRIS 83

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V +P  AD+++   R +Y+ GK +G  NV++   + +   + +I +  D+  L+  L R 
Sbjct: 84  VGNPGIADILMLHSRQLYVVGKALGTTNVVVWDKNERVFASFNIEVVHDLDTLKRKLHRL 143

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--------------------- 169
           +    I V    + ++L G V ++   + A +L++ FL                      
Sbjct: 144 LPGEVIEVHSAQERIILSGQVSSVVKMKAAEDLAQGFLPECISAESNVLVRDTTQGTPII 203

Query: 170 --QSGRNQYANSSSKK------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
             Q    + A+ ++++      V+NL+ + G  QV L++ +AE+ R +LK+     ++  
Sbjct: 204 IQQGDGGRGASGANQEGCKKGSVVNLMQVGGAHQVMLEIKVAEIARTVLKRFDSNFNVFS 263

Query: 222 SSS---GPSKSFAADFGGKFVSEGGDFSVKGVLDR------------------------- 253
             S     + S  A F       G +  + G L+                          
Sbjct: 264 FDSPWKFGANSGGASFPNALTPSGNEVPILGSLNGEDSPIGPVVDLFQPNTPGIQDKGVF 323

Query: 254 -------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-TGAT 305
                  F  E VL A  +    + LAEPTLT ++GQ A F SGG+       S  TG  
Sbjct: 324 LSYLSSKFFLEAVLEASRQKGLAKVLAEPTLTTLTGQEAQFVSGGEFPIPVPQSGITGNV 383

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----------NAGDMPSYRVRK 355
           ++   ++GV+++F P VL  GRI L++   VSE    V          N   +PS   R 
Sbjct: 384 TIEFKEFGVIVNFLPLVLDSGRINLKLNVAVSELSQDVPVTLGVQGTENTFVIPSLTKRS 443

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A  TVEL  G TI +AGL+ D++++L   +P L  +PILGALFR+  F   +TE+ +  T
Sbjct: 444 AKATVELADGQTIGIAGLINDNLRELVTKLPGLGDVPILGALFRSQEFMSGQTELVMFVT 503

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           P L +P++ + +  P D +    D + +   R+        +   +G
Sbjct: 504 PHLARPISPQQVKLPTDSFVPPTDLEFYLMGRMEAREMSNSSPSSQG 550


>gi|171320618|ref|ZP_02909638.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
 gi|171094131|gb|EDT39218.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
          Length = 460

 Score =  332 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 132/458 (28%), Positives = 215/458 (46%), Gaps = 29/458 (6%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
            A    +         G  +SI   K  +L +      + V+DP+ AD+ V SPRT+++F
Sbjct: 17  VAPGVALAQRAHAADAGAALSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVF 76

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           GK  G   +I +G + + +L   ++++ D A L+  L        + V     ++++ G 
Sbjct: 77  GKKAGTTTLIALGANHRPILRRTVIVQVDTASLQTVLDSRFPQLKLSVSGAPGSLMVSGK 136

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           V +  D+   ++    +L+            +K++N L ++   QV L+V + EV R++ 
Sbjct: 137 VPSAADADAVMQSLTPYLNDK----------EKIVNRLTLSRPIQVNLRVRVTEVSRNVT 186

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGK-------FVSEGGDFSVKGVL--DRFSFETVLH 261
           +Q+G   S  G++                      +S  G +SV G     R+S + VL 
Sbjct: 187 QQLGINWSSLGAAGNFIGGLFNGRTLMDPTTKLFNLSPTGAYSVLGGFHAGRWSIDVVLD 246

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFT 319
           AL++   I  LAEP LTA+SGQ+ASF +GG+         S+TGA +V    +GV L FT
Sbjct: 247 ALDQEGLITMLAEPNLTAMSGQTASFLAGGEIPIPVAQAGSTTGAITVEFKPFGVSLDFT 306

Query: 320 PTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PTVL+  RI L+++ EVSE      +      +P   VR+ +TTVEL SG +  + GLL+
Sbjct: 307 PTVLADNRISLKVRPEVSEVDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQ 366

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
                    IP L ++PI+G LF +  F   +TE+ +  TP++V+P     L +  D  +
Sbjct: 367 SQTADTVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVA 426

Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
                  F   R   +         E     GA GF+Y
Sbjct: 427 RPSSDLEFAVQRNLGLDLLSG----ETPRLVGAAGFVY 460


>gi|260776715|ref|ZP_05885610.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607938|gb|EEX34203.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
          Length = 476

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 207/454 (45%), Gaps = 33/454 (7%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           S       K + +  +K   + +    + V + DP   D+V+     ++L GK +G  N+
Sbjct: 7   SHAATQSSKVVKVPHHKSTHVTLVGKAKRVSLGDPEVLDIVMLKSNEVFLIGKKLGSTNL 66

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           +     G+ + +++I +  D+  L+  L  F+ D  I V    + ++L G+V +      
Sbjct: 67  MAWDSRGRLIESINIEVTHDLNSLKAKLFEFLPDEEIGVHSAQNRLILSGLVSSQSAMNI 126

Query: 160 AVELSETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQI- 213
           A+ ++ET+ +    ++   S S++V     +NLL I G  QV L+VT+AEV+R ++++  
Sbjct: 127 ALRVAETYAAGQEVDKETESLSEQVSKTGVINLLTIGGAQQVMLEVTVAEVQRTLVRKFD 186

Query: 214 ----GFQHSITGSSSGPSKSFAAD---------FGGKFVSEGGDFSVKGVLDRFSFETVL 260
                FQ S   +  G S   + D         F    +   G        + F F   L
Sbjct: 187 SNFHFFQSSGDFNWGGTSAGGSIDDVNNVVAPIFNAPTIENTGLLGTLIDSNTF-FTFAL 245

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
              ++    + LAEP LTA+SG  A F +GG+             ++   +YGV L F P
Sbjct: 246 DIAKQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DEDGITIEYKEYGVGLKFIP 303

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVL 370
           T+L+  +I L +  +VSE                   +P    R A +T+EL  G TI +
Sbjct: 304 TILTDQKINLNLAVDVSEIANSATLTLAPGGTNATYVIPPITRRSASSTLELADGQTIGI 363

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL ++++     +P  S IPILG +F +  +   ETE+ I  TP L KP+    ++ P
Sbjct: 364 AGLLSENVRDSVAEMPGFSDIPILGQMFNSQEYISGETELVILVTPRLAKPIDRNRVTLP 423

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            D +   +D + +   R   +  P +AS+ + + 
Sbjct: 424 TDSFVEPNDFEYYLLGRGAYLE-PADASKPKAER 456


>gi|83859357|ref|ZP_00952878.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633]
 gi|83852804|gb|EAP90657.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633]
          Length = 529

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 155/541 (28%), Positives = 262/541 (48%), Gaps = 79/541 (14%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG---KKISIGLNKV 57
           M    +T   +  +      P+ A+L   +      + +   E G G   + + + L + 
Sbjct: 1   MARFSQTLCAVALMAAACVCPAEAQLSGGRTEANNTLQVHIREPGAGPASESLQLPLGQA 60

Query: 58  IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
            ++ +P D  DV++++   A  VV + R  ++ G+ VG+ N+     DG  +L+L++ +E
Sbjct: 61  AVIHLPEDAADVVIANDEVASAVVRTTRRAFVMGQAVGRTNIFFFNADGGLILDLNVRVE 120

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
           RDIA L+  L RF+ +  I+ E ++  +VL G V +   +  A+++++ ++         
Sbjct: 121 RDIAALQDALDRFVPEGRIQAESMNANIVLSGQVPSAAAADTALQVAQRWVD-------- 172

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI------------------------ 213
             + ++V++ L + G DQVTL+V I E+ R +++Q+                        
Sbjct: 173 --TPEQVVSFLTVEGRDQVTLQVRIVEMERTLVRQLGVNLSGEQAFGEFTPTVRTAATND 230

Query: 214 --------------------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
                                FQ+S    +S       A  GG   + G    V GVL  
Sbjct: 231 RGDPLFDQNGAPIYEVYQQGRFQNSAGWGTSNAFGVAGAALGGLTGTLGTQNLVDGVLQS 290

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            S    L+ALER   +RTLAEP +TAISG+ A F +GG+          G  ++    +G
Sbjct: 291 -SISATLNALERVGLVRTLAEPNITAISGEPAQFLAGGEFPVPVGRDRDGNVTIEFKPFG 349

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS--------------------EPVIGVNAGDMPSYRV 353
           V L FTP VLS GRI LR+ TEVS                         V    +P+  V
Sbjct: 350 VGLGFTPVVLSEGRISLRVSTEVSELSNEGAISLNSQVITDDQGNVTGTVQGVTIPALSV 409

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            +A+TTVELPSGG++V+AGL++++ +Q  + +P + ++P+LG+LFR+  F   ETE+ + 
Sbjct: 410 NRAETTVELPSGGSMVIAGLIREETRQAMDSVPGIERMPVLGSLFRSRDFANNETELVVV 469

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            TP+LV P+   D+  P + ++V   A   F  R+N++Y    A +VE + + G IGF+ 
Sbjct: 470 VTPYLVDPLNPNDVESPAEGFAVSSLAAGAFLGRLNRVYAAPGA-QVENRGWSGPIGFVL 528

Query: 474 K 474
           +
Sbjct: 529 E 529


>gi|121600042|ref|YP_993006.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|124383335|ref|YP_001026338.1| type II secretion system protein [Burkholderia mallei NCTC 10229]
 gi|126450127|ref|YP_001080388.1| RhcC2 [Burkholderia mallei NCTC 10247]
 gi|237812165|ref|YP_002896616.1| type II/III secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|254178619|ref|ZP_04885274.1| RhcC2 [Burkholderia mallei ATCC 10399]
 gi|254358540|ref|ZP_04974813.1| RhcC2 [Burkholderia mallei 2002721280]
 gi|121228852|gb|ABM51370.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|124291355|gb|ABN00624.1| putative type II secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|126242997|gb|ABO06090.1| RhcC2 [Burkholderia mallei NCTC 10247]
 gi|148027667|gb|EDK85688.1| RhcC2 [Burkholderia mallei 2002721280]
 gi|160699658|gb|EDP89628.1| RhcC2 [Burkholderia mallei ATCC 10399]
 gi|237503093|gb|ACQ95411.1| type II/III secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 482

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + 
Sbjct: 57  GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 116

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +L   ++++ D   L+  L        + +     ++++ G V +  D+   V+  + 
Sbjct: 117 RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 176

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +L Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S   
Sbjct: 177 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 226

Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277
                     F        +S  G FSV G     R+S + VL AL++   I  LAEP L
Sbjct: 227 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 286

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVS
Sbjct: 287 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 346

Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             +P   V  G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+
Sbjct: 347 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 406

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R   I  
Sbjct: 407 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 464

Query: 454 PKEASEVEGQNYKGAIGFIY 473
             +    +     G  GF+Y
Sbjct: 465 --DPLGGDAPRLAGPAGFVY 482


>gi|76811933|ref|YP_333435.1| RhcC2 [Burkholderia pseudomallei 1710b]
 gi|126441311|ref|YP_001058908.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|126453026|ref|YP_001066150.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|134282366|ref|ZP_01769071.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|217421397|ref|ZP_03452901.1| type II/III secretion system protein [Burkholderia pseudomallei
           576]
 gi|226196310|ref|ZP_03791892.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|242314528|ref|ZP_04813544.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|254179872|ref|ZP_04886471.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|254188722|ref|ZP_04895233.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254197611|ref|ZP_04904033.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|254261104|ref|ZP_04952158.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
 gi|254297713|ref|ZP_04965166.1| type II/III secretion system protein [Burkholderia pseudomallei
           406e]
 gi|76581386|gb|ABA50861.1| RhcC2 [Burkholderia pseudomallei 1710b]
 gi|126220804|gb|ABN84310.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|126226668|gb|ABN90208.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|134246404|gb|EBA46493.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|157806781|gb|EDO83951.1| type II/III secretion system protein [Burkholderia pseudomallei
           406e]
 gi|157936401|gb|EDO92071.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169654352|gb|EDS87045.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|184210412|gb|EDU07455.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|217395139|gb|EEC35157.1| type II/III secretion system protein [Burkholderia pseudomallei
           576]
 gi|225931527|gb|EEH27532.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|242137767|gb|EES24169.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|254219793|gb|EET09177.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
          Length = 482

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + 
Sbjct: 57  GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 116

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +L   ++++ D   L+  L        + +     ++++ G V +  D+   V+  + 
Sbjct: 117 RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 176

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +L Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S   
Sbjct: 177 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 226

Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277
                     F        +S  G FSV G     R+S + VL AL++   I  LAEP L
Sbjct: 227 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 286

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVS
Sbjct: 287 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 346

Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             +P   V  G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+
Sbjct: 347 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 406

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R   I  
Sbjct: 407 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 464

Query: 454 PKEASEVEGQNYKGAIGFIY 473
             +    +     G  GF+Y
Sbjct: 465 --DPLGGDAPRLAGPAGFVY 482


>gi|237678812|emb|CAQ57539.1| RhcC2 protein [Bradyrhizobium elkanii]
          Length = 484

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 130/476 (27%), Positives = 217/476 (45%), Gaps = 21/476 (4%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           L R  + +    +  S+ + A++    +             G    +++  ++   + + 
Sbjct: 25  LSRLCYVLCGFAMLFSSAAAAEIKRDGKGEPPRAAPG----GTSGTLNLTSSQGKTVHLT 80

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
                + V+DPT AD    S  T+++FGK  G+ ++  +  +G+ +  L +++ + I  L
Sbjct: 81  AAATSIFVADPTIADYQAPSNTTIFVFGKKSGRTSLFALNENGEALAELRVVVTQPIEDL 140

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
             TLR  + D  I V       +L G     +  + A +++E FL           +   
Sbjct: 141 RATLRAEVGDYPIHVSYTPRGAILSGTAPNAEVVETAKKVTEQFLG----------AGSL 190

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           V+N + +AG  QV L V +AEV R  +K +    + + S +G       D G      GG
Sbjct: 191 VVNKIQVAGSLQVNLSVRVAEVSRSAVKDLNIHFTAS-SPNGAFLISGKDGGSGAAGGGG 249

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
              +       +   VL AL        LAEP LTA+SG+SASF +GG+     +     
Sbjct: 250 TIGIGFSAGNTNLSAVLDALASEHLASILAEPNLTAMSGESASFLAGGEFPIPVM-QDNR 308

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359
             SV    +GV L F PTVL+  +I +R++ EVSE      + +N  ++P+   R+A T 
Sbjct: 309 QVSVQFRQFGVSLEFVPTVLNNNQINVRVKPEVSELSSEGQVKINGMEVPALSTRRASTV 368

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VEL SG +  + GL++ +        P L  +PILGALFR+S F + ETE+ I  TP++V
Sbjct: 369 VELASGQSFAIGGLIRRNFNNDIGEFPWLGDVPILGALFRSSSFQKRETELVIIVTPYIV 428

Query: 420 KP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +P      +S P D  +   DA     N + +    ++A         G+ GFI +
Sbjct: 429 RPGSNPSRMSAPSDRIAPPSDAGRILTNTLARPPKDRDAPRTSAPGLTGSAGFIIE 484


>gi|239908021|ref|YP_002954762.1| bacterial type II and III secretion system protein family protein
           [Desulfovibrio magneticus RS-1]
 gi|239797887|dbj|BAH76876.1| bacterial type II and III secretion system protein family protein
           [Desulfovibrio magneticus RS-1]
          Length = 528

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 129/502 (25%), Positives = 225/502 (44%), Gaps = 80/502 (15%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           R      +        S   +         A      ++ V +    ++++ + K +ILQ
Sbjct: 4   RNCLPRLWARALAIALSLVLA-------APAQIVWGGVAPVAVRAAPRLALTIGKSVILQ 56

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
              D+  V V+ P  AD V+ SPR +Y+ G+  G  N+ L     K     D+ +  D +
Sbjct: 57  SDADIARVSVAQPDVADFVLLSPRQIYVTGRAPGITNLTLWDKGDKIRAVYDLDVAPDAS 116

Query: 122 HLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
            L+  L   +     I V    D++ L G VR  +  ++A+ L+E +            +
Sbjct: 117 RLKKMLHDVMPGETGIEVLASQDSIALSGTVRDAESLKKALSLAEVY------------A 164

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------------------- 221
            KKV+NLL+++G  QV L+V +AE+ + ++ ++G   +  G                   
Sbjct: 165 PKKVLNLLSVSGVQQVMLEVRVAEMSKSVVNRMGINLNAVGDGNFGYTLLGGLSTLADTV 224

Query: 222 ------------------SSSGPSKSFAADFGGKF-------------VSEGGDF----S 246
                              S G S + +A    +F             +S+G       +
Sbjct: 225 FNIDNVQNAYKYSTIKFNGSDGSSSTESATIQTRFREFNQPEQSKTVGLSQGTAAMRFST 284

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
             G     +   VL  L++   ++ LAEP L  ++GQSA F +GG+     V S  G TS
Sbjct: 285 NWGGAGNTTMTAVLDLLKQNGLVKILAEPNLVCLNGQSAKFLAGGEIPVP-VPSGLGTTS 343

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVEL 362
           +   ++GV L FTPTV +   I L++  EVS+        +++ ++P+   R+A T+VEL
Sbjct: 344 IEWKEFGVGLKFTPTV-AGEVISLQVNPEVSDLDYTRAIKLDSFEIPAVLTRRASTSVEL 402

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +G T  +AGLLK++ ++  +  P +  IP+LG LF++S + ++++E+ I  T  LVKP+
Sbjct: 403 KNGQTFAIAGLLKEEGRESVDKYPWIGDIPVLGNLFKSSSYQKDQSELVILITAHLVKPL 462

Query: 423 AMRDLSRPDDHYSVEDDAKAFF 444
             +D+  P D     DD + F 
Sbjct: 463 NKKDMILPTDGVHEPDDLEFFL 484


>gi|294012239|ref|YP_003545699.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
 gi|292675569|dbj|BAI97087.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
          Length = 543

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 139/517 (26%), Positives = 225/517 (43%), Gaps = 87/517 (16%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           M   L +     + LP   +A  A +N+S+       ++ + LNK  +L V       LV
Sbjct: 1   MLASLLALGAGASLLPMQAQAQVASLNVSNAN--HAGQLDVPLNKSQVLTVDRPFAKALV 58

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
            +   ADV+  + R++Y+ GK +G  ++ L       +  +D+ +  D+  L+  L   I
Sbjct: 59  GNAEIADVLPMTNRSVYVLGKKMGTTSLTLYDSRNMMIAVVDVAVGPDVVTLKRQLSELI 118

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
               I   + +D ++L G V +     +AV ++ T+             S+K++N+L++ 
Sbjct: 119 PGEQIGARISNDALILTGTVSSAAAVDQAVRIASTYAG----------GSEKIVNMLSVG 168

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--------------------------- 224
              QV L+V  +EV R   K++G  H+   +S                            
Sbjct: 169 ASQQVMLEVRFSEVNRQAAKELGLNHTFLNNSGKFVGGMGENGLAGVPVTGNTSSMGSGT 228

Query: 225 ------------------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV- 259
                                     S +F+          GG+ ++  +L   +F  + 
Sbjct: 229 SNSSSLTNTITTTNGVTNTVNQAVNSSSAFSNISNSSVTGRGGNGALDLLLPTTAFGALG 288

Query: 260 -------------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
                        L ALER   ++TLAEPTL A+SG++ASF +GG+       +  G   
Sbjct: 289 WVTNLGGLRISSALDALERKGLVKTLAEPTLVALSGETASFLAGGEFPIPVAQNGNGTGS 348

Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKA 356
                +V    +GV L FTPTVLS G I L ++ EVS       + +N   +P    R+A
Sbjct: 349 GSNSITVEFKPFGVSLGFTPTVLSDGIINLVVEPEVSSIDPSASVQINGLVIPGLLTRRA 408

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T VEL  G +  +AGLL++D Q     IP+L  +PI+GALFR+S F ++ETE+ +  TP
Sbjct: 409 KTVVELRDGQSFAIAGLLRNDFQDTIRQIPVLGSLPIIGALFRSSGFQKQETELVMIVTP 468

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
            LVKP+   D+  P D      +   F   R +K  G
Sbjct: 469 RLVKPMRADDVRLPTDRVGNPHELDLFLMGRTDKAVG 505


>gi|167824270|ref|ZP_02455741.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
 gi|167919049|ref|ZP_02506140.1| type II/III secretion system protein [Burkholderia pseudomallei
           BCC215]
          Length = 444

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + 
Sbjct: 19  GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 78

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +L   ++++ D   L+  L        + +     ++++ G V +  D+   V+  + 
Sbjct: 79  RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 138

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +L Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S   
Sbjct: 139 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 188

Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277
                     F        +S  G FSV G     R+S + VL AL++   I  LAEP L
Sbjct: 189 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 248

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVS
Sbjct: 249 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 308

Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             +P   V  G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+
Sbjct: 309 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 368

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R   I  
Sbjct: 369 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 426

Query: 454 PKEASEVEGQNYKGAIGFIY 473
             +    +     G  GF+Y
Sbjct: 427 --DPLGGDAPRLAGPAGFVY 444


>gi|167738675|ref|ZP_02411449.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
          Length = 434

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + 
Sbjct: 9   GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 68

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +L   ++++ D   L+  L        + +     ++++ G V +  D+   V+  + 
Sbjct: 69  RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 128

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +L Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S   
Sbjct: 129 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 178

Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277
                     F        +S  G FSV G     R+S + VL AL++   I  LAEP L
Sbjct: 179 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 238

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVS
Sbjct: 239 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 298

Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             +P   V  G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+
Sbjct: 299 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 358

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R   I  
Sbjct: 359 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 416

Query: 454 PKEASEVEGQNYKGAIGFIY 473
             +    +     G  GF+Y
Sbjct: 417 --DPLGGDAPRLAGPAGFVY 434


>gi|53719431|ref|YP_108417.1| putative fimbriae assembly-related protein [Burkholderia
           pseudomallei K96243]
 gi|167815898|ref|ZP_02447578.1| RhcC2 [Burkholderia pseudomallei 91]
 gi|167845816|ref|ZP_02471324.1| RhcC2 [Burkholderia pseudomallei B7210]
 gi|52209845|emb|CAH35817.1| putative fimbriae assembly-related protein [Burkholderia
           pseudomallei K96243]
          Length = 439

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + 
Sbjct: 14  GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 73

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +L   ++++ D   L+  L        + +     ++++ G V +  D+   V+  + 
Sbjct: 74  RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 133

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +L Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S   
Sbjct: 134 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 183

Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277
                     F        +S  G FSV G     R+S + VL AL++   I  LAEP L
Sbjct: 184 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 243

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVS
Sbjct: 244 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 303

Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             +P   V  G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+
Sbjct: 304 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 363

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R   I  
Sbjct: 364 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 421

Query: 454 PKEASEVEGQNYKGAIGFIY 473
             +    +     G  GF+Y
Sbjct: 422 --DPLGGDAPRLAGPAGFVY 439


>gi|167620125|ref|ZP_02388756.1| type II/III secretion system protein [Burkholderia thailandensis
           Bt4]
          Length = 427

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 128/441 (29%), Positives = 213/441 (48%), Gaps = 27/441 (6%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
               +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G +
Sbjct: 1   PAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGAN 60

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
            + +L   +++  D   L+  L       ++ +     ++++ G V +  D+   V+  +
Sbjct: 61  DRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVVQTLK 120

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
            +L Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S  
Sbjct: 121 PYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGN 170

Query: 226 PSKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPT 276
                      F        +S  G FSV G      +S + VL AL++   I  LAEP 
Sbjct: 171 FVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPN 230

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           LTAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EV
Sbjct: 231 LTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEV 290

Query: 337 S--EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           S  +P   V  G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P
Sbjct: 291 SEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLP 350

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           +LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R   I 
Sbjct: 351 VLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIEFVLQRSLGI- 409

Query: 453 GPKEASEVEGQNYKGAIGFIY 473
              +    +     G  GF+Y
Sbjct: 410 ---DPLGGDAPRLTGPAGFVY 427


>gi|83719085|ref|YP_442980.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|257139204|ref|ZP_05587466.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|83652910|gb|ABC36973.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 492

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 128/444 (28%), Positives = 213/444 (47%), Gaps = 27/444 (6%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
                  +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +
Sbjct: 63  AAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFAL 122

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
           G + + +L   +++  D   L+  L       ++ +     ++++ G V +  D+   V+
Sbjct: 123 GANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVVQ 182

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             + +L Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  G+
Sbjct: 183 TLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGA 232

Query: 223 SSGPSKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLA 273
           S             F        +S  G FSV G      +S + VL AL++   I  LA
Sbjct: 233 SGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLA 292

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           EP LTAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+++
Sbjct: 293 EPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVR 352

Query: 334 TEVS--EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            EVS  +P   V  G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+
Sbjct: 353 PEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLA 412

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           ++P+LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R  
Sbjct: 413 RLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIEFVLQRSL 472

Query: 450 KIYGPKEASEVEGQNYKGAIGFIY 473
            I    +    +     G  GF+Y
Sbjct: 473 GI----DPLGGDAPRLTGPAGFVY 492


>gi|167911033|ref|ZP_02498124.1| type II/III secretion system protein [Burkholderia pseudomallei
           112]
          Length = 438

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + 
Sbjct: 13  GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 72

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +L   ++++ D   L+  L        + +     ++++ G V +  D+   V+  + 
Sbjct: 73  RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 132

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +L Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S   
Sbjct: 133 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 182

Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277
                     F        +S  G FSV G     R+S + VL AL++   I  LAEP L
Sbjct: 183 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 242

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVS
Sbjct: 243 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 302

Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             +P   V  G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+
Sbjct: 303 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 362

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R   I  
Sbjct: 363 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 420

Query: 454 PKEASEVEGQNYKGAIGFIY 473
             +    +     G  GF+Y
Sbjct: 421 --DPLGGDAPRLAGPAGFVY 438


>gi|153834055|ref|ZP_01986722.1| Flp pilus assembly protein [Vibrio harveyi HY01]
 gi|148869610|gb|EDL68600.1| Flp pilus assembly protein [Vibrio harveyi HY01]
          Length = 486

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 125/436 (28%), Positives = 211/436 (48%), Gaps = 23/436 (5%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
           ++++      GK +S+  ++   L +    + V + DP   D++V     ++L GK +G 
Sbjct: 16  LSVNAAPAQSGKVVSVAHHQSTQLMISGKAKKVTLGDPEVLDIIVLRSNELFLVGKKLGT 75

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            NV +    G+ +   ++ +  D+  L+  L +F+ D +I V    + VVL G+V T Q+
Sbjct: 76  TNVSVWDSRGRLIEQFNVEVTHDLNTLKSKLYQFLPDESIEVHSAQEKVVLRGLVSTQQN 135

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQI- 213
              AV+++ETF +    ++  + S     V+NLL+I G  QVTL+VT+AEV+R ++++  
Sbjct: 136 MDTAVKIAETFAAGEAADEGEDDSKDDSMVINLLSIGGAQQVTLEVTVAEVQRTLVRRFD 195

Query: 214 ----GFQHSITGSSSGPSKSFAADFGGKFVSEGG--DFSVKGVL--DRFSFETVLHALER 265
                FQ S   +    +     D  G  ++     DF   G        F   L    +
Sbjct: 196 SNFHFFQKSGDFTWGATTAGGGIDNIGPILNIPSVDDFGFLGSFIDSNTLFTFALDVARQ 255

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + LAEP+LTA+SG  A F +GG+      +      ++   +YGV L F P +LS 
Sbjct: 256 NGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNED--GITIDYKEYGVQLDFVPYILSD 313

Query: 326 GRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            RI L++   VSE                   +P    R A TT+EL  G TI +AGLL 
Sbjct: 314 KRINLKMNVNVSEIANSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLS 373

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           ++ + + +GIP  S +P+LG LF++  F   ETE+ I  TP L  P+  R ++ P D + 
Sbjct: 374 ENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGFV 433

Query: 436 VEDDAKAFFFNRVNKI 451
             +D + +   +  ++
Sbjct: 434 SPNDVEFYLLGKGAEL 449


>gi|167894387|ref|ZP_02481789.1| type II/III secretion system protein [Burkholderia pseudomallei
           7894]
          Length = 426

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + 
Sbjct: 1   GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 60

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +L   ++++ D   L+  L        + +     ++++ G V +  D+   V+  + 
Sbjct: 61  RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 120

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +L Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S   
Sbjct: 121 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 170

Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277
                     F        +S  G FSV G     R+S + VL AL++   I  LAEP L
Sbjct: 171 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 230

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVS
Sbjct: 231 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 290

Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             +P   V  G +  P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+
Sbjct: 291 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 350

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R   I  
Sbjct: 351 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 408

Query: 454 PKEASEVEGQNYKGAIGFIY 473
             +    +     G  GF+Y
Sbjct: 409 --DPLGGDAPRLAGPAGFVY 426


>gi|28899193|ref|NP_798798.1| putative pilus assembly transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153836824|ref|ZP_01989491.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
 gi|260361569|ref|ZP_05774596.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030]
 gi|260876726|ref|ZP_05889081.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034]
 gi|260898195|ref|ZP_05906691.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466]
 gi|260900397|ref|ZP_05908792.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037]
 gi|28807417|dbj|BAC60682.1| putative pilus assembly transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149749970|gb|EDM60715.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
 gi|308089085|gb|EFO38780.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466]
 gi|308091468|gb|EFO41163.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034]
 gi|308109123|gb|EFO46663.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037]
 gi|308114031|gb|EFO51571.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030]
 gi|328474270|gb|EGF45075.1| pilus assembly protein CpaC [Vibrio parahaemolyticus 10329]
          Length = 487

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 125/437 (28%), Positives = 209/437 (47%), Gaps = 24/437 (5%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
           +++       G+ +S+  ++   L +    + V + DP   D+VV     ++L GK +G 
Sbjct: 16  LSVHAATAQSGRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNELFLIGKKLGT 75

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            NV +    G+ +   ++ +  D+  L+  L +F+ D +I V    + VVL G+V + Q+
Sbjct: 76  TNVSVWDSRGRLIEQFNVEVTHDLNTLKSKLFQFLPDESIEVHSAQEKVVLRGLVSSQQN 135

Query: 157 SQRAVELSETFL---SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
              AV+++ETF    +    +  A      V+NLL+I G  QVTL+VT+AEV+R ++++ 
Sbjct: 136 MDIAVKIAETFALGDAADEEDDNAKDDESSVINLLSIGGAQQVTLEVTVAEVQRSLVRRF 195

Query: 214 -----GFQHSITGSSSGPSKSFAADFGGKFVSEGG--DFSVKGVL--DRFSFETVLHALE 264
                 FQ S   +    +     D  G  ++     DF   G        F   L   +
Sbjct: 196 DSNFHFFQKSGDFTWGATTAGGGIDNIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           +    + LAEP+LTA+SG  A F +GG+      +      ++   +YGV L F P +LS
Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNED--GITIDYKEYGVQLDFVPFILS 313

Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             RI L++   VSE                   +P    R A TT+EL  G TI +AGLL
Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            ++ + + +GIP  S +P+LG LF++  F   ETE+ I  TP L  P+  R ++ P D +
Sbjct: 374 SENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRVTLPTDGF 433

Query: 435 SVEDDAKAFFFNRVNKI 451
              +D + +   +  K+
Sbjct: 434 VAPNDVEFYLLGKGAKL 450


>gi|83312840|ref|YP_423104.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum
           magneticum AMB-1]
 gi|82947681|dbj|BAE52545.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum
           magneticum AMB-1]
          Length = 495

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 146/474 (30%), Positives = 245/474 (51%), Gaps = 28/474 (5%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           +    S    A  P      +    +  +     + + + + K I L +P  V++V++ +
Sbjct: 37  VVTLGSPSEAAPSPRPGTPQS----LRGLSSAAAESMQVPVGKSIDLPLPGAVKEVVIGN 92

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
              ADV+V +P  +++ G+ VGQ NV L+   G+ M  +D+ +  D   ++  LR  + +
Sbjct: 93  SDIADVIVRTPHMVHITGRAVGQTNVFLMDRSGRVMRRIDLAVAIDSQAVKDALRAVLPE 152

Query: 134 SN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
              I VE V+D++ L G V+    ++ A  ++  F++  G          K++N++ +  
Sbjct: 153 ERAITVEAVADSLYLSGSVKNDGAARDAKMVARRFVADDG----------KLVNMIRVVN 202

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------FGGKFVSEGGDFS 246
           E QV L V +AE++R +LK++GF  +   S S P  +  +        G    S    F 
Sbjct: 203 EQQVLLHVKVAEIQRTVLKELGFGLTANKSISLPGTASLSSFTTSSTVGLIDSSSTAIFG 262

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
              V    +     + LE    IRTL EP LTA+SG++A+  +GG+     VS++ G+ S
Sbjct: 263 TATVTGLGALAANFNILENQGLIRTLVEPNLTAVSGETATMLAGGELPIP-VSTTNGSIS 321

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVE 361
           V    YGV+L FTP VL PGR+ L++ TEVS               +P+++VR+A +TVE
Sbjct: 322 VEFKPYGVLLSFTPVVLDPGRLSLKMSTEVSAIDTANKTAITTTISVPAFKVRRAGSTVE 381

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           LPSGG+I++AGLL++DI     G+P L  +P+LGALFR++ F R ETE+ +  + ++++P
Sbjct: 382 LPSGGSIMIAGLLQNDITANIAGLPGLMDLPVLGALFRSNAFQRNETELVVILSAYVIRP 441

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG-QNYKGAIGFIYK 474
           V   +LS P+D ++   D K F   R+   Y  +   E       +G  G I +
Sbjct: 442 VDQPNLSTPNDGFAPSSDLKRFLLGRLQDTYTTRGKGEPAAPPALQGPYGHIVQ 495


>gi|283852073|ref|ZP_06369347.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
 gi|283572463|gb|EFC20449.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
          Length = 527

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 139/491 (28%), Positives = 215/491 (43%), Gaps = 84/491 (17%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
              K+S+ + K +ILQ   DV  V V+ P  AD V+ SPR +Y+ G+  G  N+ L    
Sbjct: 40  STPKLSLTIGKSVILQSDADVSRVSVAQPEIADFVLLSPRQVYVTGRAPGVTNLTLWDKG 99

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
            K     D+ +  DI  L+  L   +     I V    D + L G VR  ++ ++A+ L+
Sbjct: 100 DKIRAVYDLDVAPDITRLKKMLHDVLPGEPGIEVRASQDAIALAGTVRDAENMKKALTLA 159

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           E +            + KKV+NL+ + G  QV L+V +AE+ + +L ++G   +  G   
Sbjct: 160 EVY------------APKKVVNLMAVGGVQQVMLEVRVAEMSKSVLNRMGINLNAIGD-- 205

Query: 225 GPSKSFAADFGGKFVSEGGD---------------FSVKGVLDRFSFE------------ 257
               +FA    G   S  G                 + KG     SF+            
Sbjct: 206 ---GNFAYTLIGGLTSVAGSMFNMDATQNVYQYITMTAKGADGNTSFDSSPIQLSYREFN 262

Query: 258 --------------------------------TVLHALERATAIRTLAEPTLTAISGQSA 285
                                            VL  L+    ++ LAEP L  ++GQ+A
Sbjct: 263 QPSNRATATMNQGTAVARWNTNWGGAGNTAMTAVLDVLKENGLVKILAEPNLVCLNGQTA 322

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VI 341
            F +GGQ     V S  G TS+   D+GV L FTPT++   RI L++  EVS+      I
Sbjct: 323 DFLAGGQIPVP-VPSGLGTTSIEWKDFGVGLKFTPTIVGGDRINLQVHPEVSDLDYAHAI 381

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +P+   R+  TTVEL +G T  +AG+LK++ +   +  P++  IPILG LF++S
Sbjct: 382 QLQGSTIPAINTRRTSTTVELKNGQTFAVAGMLKEEARSTFDKYPVVGDIPILGNLFKSS 441

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE-- 459
           +F +++TE+ I  T  L KP+  + +S P D     DD + F   R +       A    
Sbjct: 442 QFQKDQTELVILITAHLAKPLDKKAVSLPTDSAHEPDDLEFFLGIRRDGGQATPAAGPLA 501

Query: 460 VEGQNYKGAIG 470
           V G    G  G
Sbjct: 502 VSGAALDGDFG 512


>gi|148976662|ref|ZP_01813349.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium
           SWAT-3]
 gi|145964013|gb|EDK29271.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium
           SWAT-3]
          Length = 456

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 117/433 (27%), Positives = 204/433 (47%), Gaps = 27/433 (6%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           +  +K   + +      V + DP   D+V+     ++L GK +G  N++     G+ + +
Sbjct: 1   MPHHKSTHVVLSGKASKVSLGDPEVLDIVILKSNEVFLIGKKLGATNLMAWDARGQLIES 60

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
           ++I +  D+  L+  L  F+ D  I V    + ++L G +   Q    A+ ++ET+ +  
Sbjct: 61  INIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQISNQQKMNVAMRIAETYAAGQ 120

Query: 172 GRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQI-----GFQHSITG 221
             ++   S S++     V+NL++I G  QV L+VT+AEV+R ++++       FQ S + 
Sbjct: 121 AADETKESGSEQAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQTSGSN 180

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPT 276
            S G +   A   G   + +    +  G+L  F      F   L   ++    + LAEP 
Sbjct: 181 FSWGGASVPAGVLGATPIFDIPTSTDYGILGSFIDSNTLFTFALDVSKQNGVAKVLAEPN 240

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           LTA+SG  A F +GG+             ++   +YGV L F PTVLS  +I L +  +V
Sbjct: 241 LTALSGSKAEFLAGGEFPIPVP--DDDGITIEYKEYGVGLKFIPTVLSDQKINLNLAVDV 298

Query: 337 S----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           S          +P        +P    R A +T+EL  G TI +AGLL ++++ +   + 
Sbjct: 299 SEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDISNKML 358

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            +  +PILG LF +  +   ETE+ I  TP L KPV    ++ P D +   +D + +   
Sbjct: 359 GIGDVPILGQLFNSQEYVSGETELVILVTPRLAKPVDRSKVTLPTDAFVDPNDLEYYLLG 418

Query: 447 RVNKIYGPKEASE 459
           R   I  P ++ +
Sbjct: 419 RSAYIAEPSDSED 431


>gi|197295153|ref|YP_002153694.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|195944632|emb|CAR57236.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 644

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 125/438 (28%), Positives = 216/438 (49%), Gaps = 18/438 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            + +   +++ L K +++ +P  V++  + +P  A   + SP+T+Y+ G  VG  N+I+ 
Sbjct: 93  AVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIVQ 152

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G     +D+ +  D   L+ +L + + +   I V   + T+VL G V + Q +Q+AV
Sbjct: 153 GKSGAC-RVIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQAV 211

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +++  +   +G           V+N+LN+    QV L+V +AEV + ++ Q+G   +I G
Sbjct: 212 QIAHAYGDSAGDAAGGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQG 271

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                S +  ++      S      V    +   F     A      ++ LAEP L  IS
Sbjct: 272 GFGSWSGALVSNLLAGVASGA----VFNKANNRPFSIAADAQNTDNLVKILAEPNLVTIS 327

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           GQ A+F +GG+       SS   T   ++   ++GV L FTPTVL+ GRI L++  EVSE
Sbjct: 328 GQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSE 387

Query: 339 PVIG------VNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                      N G    +P    R+A TTV++  G +  + GL+KD+     + IP + 
Sbjct: 388 LSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGVG 447

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           ++P+LGALFR++ F ++ TE+    TP LVKP+   D++ P D +S  ++   +    + 
Sbjct: 448 EVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVYATGNME 507

Query: 450 KIYGPKEASEVEGQNYKG 467
              G ++A     Q   G
Sbjct: 508 GRGGVRKAGAQPMQPANG 525


>gi|78060314|ref|YP_366889.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
 gi|77964864|gb|ABB06245.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
          Length = 652

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 124/427 (29%), Positives = 215/427 (50%), Gaps = 18/427 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            + +   +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+ 
Sbjct: 93  AVRESTSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQ 152

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G     +D+ +  D   L+ +L + + +   I V   + T+VL G V +   +Q+A+
Sbjct: 153 GRSGAC-RVIDVAVGADAGGLQASLMQLMPNERDIHVSTAAGTIVLAGTVSSSMAAQQAM 211

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +++  +   +G       +   V+N+LN+    QV L+V +AEV + ++ Q+G   +I G
Sbjct: 212 QIARAYGDSAGDPAGGGKAGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSALNIQG 271

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                S +  ++     V+ G  FS     +   F     A      ++ LAEP L  IS
Sbjct: 272 GFGSWSGALVSNLLAG-VATGIAFS---KANNKPFNLAADAQNTDNLVKILAEPNLVTIS 327

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           GQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EVSE
Sbjct: 328 GQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLSNGRISLKVAPEVSE 387

Query: 339 PVIG------VNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                      N G    +P    R+A TTV++  G T  + GL+KD+     + +P + 
Sbjct: 388 LSQTGVTLSATNIGGTSILPLITTRRASTTVQMGDGETFAIGGLIKDNGTGALKALPGVG 447

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           +IP+LGAL R++ F ++ TE+    TP LVKP+   D+  P D +S  ++   +    + 
Sbjct: 448 EIPVLGALLRSTSFQQDRTELIFVITPHLVKPLQTADVPLPTDSFSKPNEVDVYATGNME 507

Query: 450 KIYGPKE 456
              G ++
Sbjct: 508 GRGGVRK 514


>gi|325525578|gb|EGD03368.1| flp type pilus assembly protein [Burkholderia sp. TJI49]
          Length = 545

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 123/432 (28%), Positives = 214/432 (49%), Gaps = 18/432 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            + +   +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+ 
Sbjct: 92  AVRESSSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQ 151

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G     +D+ +  D   L+ +L++ + +   I V   + T+VL G V   Q +Q+AV
Sbjct: 152 GRSGAC-RVIDVAVGADAGGLQTSLQQLMPNERDIHVSTAAGTIVLAGSVSNSQAAQQAV 210

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
            ++  +   +G           V+N+L++    QV L+V +AEV + ++ Q+G   +I G
Sbjct: 211 AIARAYGDSAGSGDAGGKPGSGVLNMLSVTSPQQVMLEVKVAEVSKTLINQLGSAFNIQG 270

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                S +  ++      S           +R  F+    A      ++ LAEP L  IS
Sbjct: 271 GFGSWSGALVSNLLAGVASGI----AVSKSNRRPFQIAADAQNTDNLVKILAEPNLVTIS 326

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           GQ A+F +GG+       SS G  +  T    ++GV L FTPTVL+ GRI L++  EVSE
Sbjct: 327 GQEATFLAGGKIFIPVPQSSGGNATTITLQEEEFGVALKFTPTVLANGRISLKVAPEVSE 386

Query: 339 PVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                          A  +P    R+A TTV++  G +  + GL+KD++    + IP + 
Sbjct: 387 LSSTGVTLSATNVSGASILPLITTRRASTTVQMNDGESFAIGGLIKDNVTGALKAIPGVG 446

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           ++P+LGALFR++ F ++ TE+    TP LVKP+ + D+  P D +S  ++A  +    + 
Sbjct: 447 EVPVLGALFRSTSFQQDRTELIFLITPHLVKPMQIADVPLPTDSFSKPNEADVYATGNME 506

Query: 450 KIYGPKEASEVE 461
              G +      
Sbjct: 507 GRRGVRRQGAEA 518


>gi|167648152|ref|YP_001685815.1| type II and III secretion system protein [Caulobacter sp. K31]
 gi|167350582|gb|ABZ73317.1| type II and III secretion system protein [Caulobacter sp. K31]
          Length = 545

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 155/518 (29%), Positives = 254/518 (49%), Gaps = 76/518 (14%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
            P +   P +      V+ I D+     + +++   K  I+++PVDV+D+LV++P  AD 
Sbjct: 41  APRIIDTPTLAPPADQVLRI-DLTASGAQSLTLARGKSAIVELPVDVRDMLVTNPAVADA 99

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
           V+  PR +Y+ G   G  + +     G+++L+L I +++D + L+ TLRR +  +NI V+
Sbjct: 100 VLRGPRRIYVLGMGQGVTDAVFFDAAGRKILSLAIRVDQDSSALQDTLRRVLPAANIEVQ 159

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
            + D+V+L GMV  + +S  A +++  F+ +             V+N+L IAG+DQV LK
Sbjct: 160 SIRDSVILTGMVANVGESTMASQIAARFVDK----------PDNVLNMLTIAGKDQVMLK 209

Query: 200 VTIAEVRRDILKQIGFQHSI-------TGSSSGPSKSFAADFG----------------- 235
           V I EV+R+I+KQ+G   S        T  + G S S+  +                   
Sbjct: 210 VRIVEVQRNIIKQLGVDSSAVLGQLGETQYAFGLSPSYGINGKLLGGLTGGYKADTTKQP 269

Query: 236 ----------------------GKFVSEGGDFSVKGVLDRFSFETV---LHALERATAIR 270
                                     S G   ++          +    + A ER   +R
Sbjct: 270 TLQVPCNAALPDGAKCLQIVRDNSVYSNGDTATITDTAGSAGLNSAKGMIQAFERVGLVR 329

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           TLAEP LT +SG++  F  GG+        +TG  ++    YGV L +TP VLS GRI L
Sbjct: 330 TLAEPNLTVVSGEAGKFLVGGEFPVPVGQDATGKVTIEFKPYGVGLGYTPIVLSGGRISL 389

Query: 331 RIQTEVSEPVI-------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           ++ TEVSE                  +   +P   VR+A+TTVELPSGG++++AGLL+  
Sbjct: 390 KLSTEVSELSSLGAFTLTTSTGTSTSSNLTVPGLTVRRAETTVELPSGGSLMIAGLLQQQ 449

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
            +Q  + +P ++ +PILGALFR+  +   ETE+ +  TP++V P   ++L  P D     
Sbjct: 450 TRQNIDALPGMTSLPILGALFRSRDYLNGETELVVIITPYIVDPTKPQNLQTPADGLQTA 509

Query: 438 DDAKAFFFNRVNK-IYGPKEASEVEGQNYKGAIGFIYK 474
            D       R+NK +  P  A+   G+ Y+G +G++ +
Sbjct: 510 SDMSTALLGRLNKVVKAPVGAN--SGRAYQGPVGYVIE 545


>gi|224824213|ref|ZP_03697321.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
 gi|224603632|gb|EEG09807.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
          Length = 520

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 144/514 (28%), Positives = 239/514 (46%), Gaps = 68/514 (13%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
            + L +S    A   P + A           I     +++ + K   L+ PV +  +L+ 
Sbjct: 23  GMLLLASYSQAATTTPKRLAATPSTVAPCNAIESAPLVNVTVGKSFRLKTPVPISRILLG 82

Query: 73  DPT-----------------------------KADV--VVHSPRTMYLFGKNVGQANVIL 101
           +P                               ADV  ++ SP  +YL GK+VG  N+IL
Sbjct: 83  NPEGSQAAQPKESTDANADKGKPSAGGSTKSGVADVDVILLSPSEIYLLGKSVGSTNIIL 142

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFI--ADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           +G +G+  L +D+ +  D A L+ +L + +    +N++V   SD++VL G V       R
Sbjct: 143 LGRNGQCTL-VDVAVGADTASLQASLNQLLSPGANNVKVSAASDSLVLTGTVADSAKLDR 201

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A+ L+E +  +S           KV+N++++    QV L+V IAE+ + +L ++G   + 
Sbjct: 202 AMTLAEAYAGKS-----------KVINMMSVDAPQQVLLEVKIAEISKKLLDKLGVNIAG 250

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G + S+ + F    +   G   + G+ D  +    + A      ++ LAEP L A
Sbjct: 251 ILNHGGWTYSWNSLFANDPL---GKALLSGINDSATRAFQIDAQHDDGLLKVLAEPNLMA 307

Query: 280 ISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           ISGQ  SF +GG+       ++T       ++   ++GV L FTPTVL  GRI L++  E
Sbjct: 308 ISGQEGSFLAGGKIFIPVAQNNTNNGGSTITLEEKEFGVALRFTPTVLDGGRINLKVAPE 367

Query: 336 VS---EPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VS      +G++A  +      PS+  R+A TTV+L  G +  + GLLK+++       P
Sbjct: 368 VSELNPEGVGISAIGVAGKSILPSFTTRRAATTVQLHDGQSFAIGGLLKNNVTTNISAFP 427

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            L +IPILGALFR++ F  +++E+    TP LVKP+   D   P D+Y   + A+ F   
Sbjct: 428 FLGEIPILGALFRSTSFQTDKSELVFVVTPRLVKPLPP-DYKLPTDNYIPPNRAELFLGG 486

Query: 447 RVNKIY------GPKEASEVEGQNYKGAIGFIYK 474
           R+             EAS     + +   GF  K
Sbjct: 487 RMEGRQPEPSASKASEASPQPEASTQAPSGFEVK 520


>gi|317154605|ref|YP_004122653.1| type II and III secretion system protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944856|gb|ADU63907.1| type II and III secretion system protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 478

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 134/471 (28%), Positives = 222/471 (47%), Gaps = 32/471 (6%)

Query: 10  TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
           + +  FL +   +V+ L P+  A+  V+N     +     IS+ ++K  IL     V  V
Sbjct: 8   SFLLAFLMALAVTVSGLVPLAVADVDVLNTEAPGV-----ISLVVSKSTILTADAPVSRV 62

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
            ++ P  A VVV SP  +Y+ G+ +G   + L    G+     D++I  D+  L+  +  
Sbjct: 63  SLAQPETASVVVLSPTQIYITGRKLGTTTLTLW-SGGQVSGVYDLVITPDVTRLKRMIHE 121

Query: 130 FIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
            +  + +++V    +++ L G V    D    + L+E              +  KV+NLL
Sbjct: 122 ILPRERSVQVLSSGESITLSGSVSNTGDLTSVLSLAEA------------EAPGKVVNLL 169

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAADFGGKFV--SE 241
            + G  QV L+V +AE+ R  LK++G   + T S+        + S  A+ G   +  ++
Sbjct: 170 RVDGVQQVMLQVRVAEMSRTALKRMGINLAATFSNFTVYSFLNNLSSLANTGSNVIELTD 229

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             +  V+      +   +L AL+     R LAEP LT +SG+SA F  GG+        +
Sbjct: 230 KINSVVRYNSGSTNVVGMLDALKAHGLARLLAEPNLTCVSGESADFLVGGEIPIP-KPGA 288

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKAD 357
            G  S+    +GV L FTPTVLS G I L +  EVSE            ++P+   RKA 
Sbjct: 289 LGTVSIEFKPFGVGLEFTPTVLSSGAINLHVSPEVSELDYTNALRYQGYEIPAISTRKAS 348

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V+L  G +  +AGL+ + +++     P+L  IP+LG LFR+S + + +TE+ I  T  
Sbjct: 349 TVVDLADGQSFAIAGLISESLKENNHRFPVLGDIPVLGTLFRSSDYQKNKTELVIIVTAH 408

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
           LVKP+ M   + P D +    D + +    +    G   A+ V  Q   G+
Sbjct: 409 LVKPLDMAGQTLPGDGFKEPTDYEFYMLGLLEG-QGASPAAMVGAQARSGS 458


>gi|257141104|ref|ZP_05589366.1| type II and III secretion system protein [Burkholderia
           thailandensis E264]
          Length = 826

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 127/430 (29%), Positives = 220/430 (51%), Gaps = 21/430 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            +G+   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  AMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSG---RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
            +++ +  ++           +   V+N+L +    QV L+V +AEV + ++ Q+     
Sbjct: 214 AIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----G 269

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
              +  G   S+        ++  G+       ++      + A      ++ LAEP L 
Sbjct: 270 SAVNLQGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRLV 329

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   TS  T    ++GV L FTPTVLS GRI L++  E
Sbjct: 330 TISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAPE 389

Query: 336 VSEPVIG------VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE           N G +   P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 390 VSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKALP 449

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LVKP+A  D+  P D ++  ++A  +   
Sbjct: 450 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYATG 509

Query: 447 RVNKIYGPKE 456
            +    G ++
Sbjct: 510 NMEGRGGLRQ 519


>gi|218887827|ref|YP_002437148.1| type II and III secretion system protein [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218758781|gb|ACL09680.1| type II and III secretion system protein [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 493

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 208/464 (44%), Gaps = 31/464 (6%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           + R      +          A    +                  + + + + K ++++  
Sbjct: 1   MSRPASLTRAAGRLVGTVHAAACAVLATVLLLAAAAQAQADATPQAVPLAVGKSMVVRTA 60

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
                V +SD   A VVV SP+ +Y+ GK  G A + L    G      DI +  D+A L
Sbjct: 61  QPAARVSMSDEAIAGVVVLSPQQVYVTGKKAGGATLTLWNGAGAITQVYDIQVTPDLAQL 120

Query: 124 EMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           +  L R + D  +I V  V +++ L G VR+      A+++++ +            +  
Sbjct: 121 KEMLHRVLPDEKDIMVMAVGESITLAGTVRSAAGMTTALDVAKMY------------APD 168

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-------------KS 229
           KV NL+ + G  QV L+V +AE+R+ +L+++G   +   ++                   
Sbjct: 169 KVTNLMQVGGVHQVLLEVKVAEMRKSVLERLGIDLTYAWNNDFAFGMLNQLFTLDSQKGV 228

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                 G  VS       +    R S    L  L++   ++ LAEPTL   SG++A F +
Sbjct: 229 VGVGPTGAVVSPNVTGMFRATSGRASLMGFLDVLKQNGLVKVLAEPTLICRSGENADFLA 288

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNA 345
           GG+     V    G  ++    YGV L FTPTV+S   I +R+  EVSE     VI +N 
Sbjct: 289 GGEIPIP-VPQGLGTVAIEFKKYGVTLGFTPTVVSDKLISMRVSPEVSELDYSNVIEING 347

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+   R+A TTVEL  G +  +AGLL+D++++  +  P+L  +P+LG LFR+S + +
Sbjct: 348 FTIPAISTRRAATTVELADGQSFAVAGLLRDEVRENIKKYPVLGDVPLLGTLFRSSNWQK 407

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
            ETE+ I  TP L KP+       P D +    + + F   ++ 
Sbjct: 408 NETELVIIVTPRLAKPLDGATAKLPTDGFREPSEFEFFLQGKME 451


>gi|107028248|ref|YP_625343.1| type II and III secretion system protein [Burkholderia cenocepacia
           AU 1054]
 gi|116687159|ref|YP_840406.1| type II and III secretion system protein [Burkholderia cenocepacia
           HI2424]
 gi|105897412|gb|ABF80370.1| type II and III secretion system protein [Burkholderia cenocepacia
           AU 1054]
 gi|116652874|gb|ABK13513.1| type II and III secretion system protein [Burkholderia cenocepacia
           HI2424]
          Length = 642

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 122/438 (27%), Positives = 214/438 (48%), Gaps = 19/438 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            + +   +++ L K +++ +P  V++  + +P  A   + SP+T+Y+ G  VG  N+I+ 
Sbjct: 93  AVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIVQ 152

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G     +D+ +  D   L+ +L + + +   I V   + T+VL G V + Q +Q+AV
Sbjct: 153 GRSGAC-RVIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQAV 211

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +++  +   +G +         V+N+LN+    QV L+V +AEV + ++ Q+G   +I G
Sbjct: 212 QIAHAYGDSAG-DAAGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQG 270

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                S +  ++      S      V    +   F     A      ++ LAEP L  IS
Sbjct: 271 GFGSWSGALVSNLLAGVASGA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTIS 326

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           GQ A+F +GG+       S +      ++   ++GV L FTPTVL+ GRI L++  EVSE
Sbjct: 327 GQEATFLAGGKIFIPIPQSGSNGVSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSE 386

Query: 339 PVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                             +P    R+A TTV++  G +  + GL+KD+     + IP + 
Sbjct: 387 LSQTGVTLSASNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGALKAIPGVG 446

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           ++P+LGALFR++ F ++ TE+    TP LVKP+   D++ P D +S  ++   F    + 
Sbjct: 447 EVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVFATGNME 506

Query: 450 KIYGPKEASEVEGQNYKG 467
              G ++A     Q   G
Sbjct: 507 GRGGVRKAGAQPMQPANG 524


>gi|170734868|ref|YP_001773982.1| type II and III secretion system protein [Burkholderia cenocepacia
           MC0-3]
 gi|169820906|gb|ACA95487.1| type II and III secretion system protein [Burkholderia cenocepacia
           MC0-3]
          Length = 646

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 122/438 (27%), Positives = 214/438 (48%), Gaps = 19/438 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            + +   +++ L K +++ +P  V++  + +P  A   + SP+T+Y+ G  VG  N+I+ 
Sbjct: 93  AVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIVQ 152

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G     +D+ +  D   L+ +L + + +   I V   + T+VL G V + Q +Q+AV
Sbjct: 153 GRSGAC-RVIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQAV 211

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +++  +   +G +         V+N+LN+    QV L+V +AEV + ++ Q+G   +I G
Sbjct: 212 QIAHAYGDSAG-DAAGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQG 270

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                S +  ++      S      V    +   F     A      ++ LAEP L  IS
Sbjct: 271 GFGSWSGALVSNLLAGVASGA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTIS 326

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           GQ A+F +GG+       S +      ++   ++GV L FTPTVL+ GRI L++  EVSE
Sbjct: 327 GQEATFLAGGKIFIPIPQSGSNGVSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSE 386

Query: 339 PVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                             +P    R+A TTV++  G +  + GL+KD+     + IP + 
Sbjct: 387 LSQTGVTLSASNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGALKAIPGVG 446

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           ++P+LGALFR++ F ++ TE+    TP LVKP+   D++ P D +S  ++   F    + 
Sbjct: 447 EVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVFATGNME 506

Query: 450 KIYGPKEASEVEGQNYKG 467
              G ++A     Q   G
Sbjct: 507 GRGGVRKAGAQPMQPANG 524


>gi|253996769|ref|YP_003048833.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
 gi|253983448|gb|ACT48306.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
          Length = 513

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 144/489 (29%), Positives = 235/489 (48%), Gaps = 35/489 (7%)

Query: 1   MRYLQRTFFT-MMSIFLFSSNPSVAKLPPIKEAN-----------AAVINISDVEIGKGK 48
           +RY        M+ + L S  P  A  P     N           AA    S  EI    
Sbjct: 16  LRYCVSNLLAAMLGVTLLSIAPLHAAEPQANMQNILVAAVTPKKVAARPTPSSTEIVPSV 75

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++S+G + ++ L   V++Q V V D     V V SPR + L  K +G   VI++   G+ 
Sbjct: 76  ELSLGQSHLVRLPAGVNLQRVKVDDDKIVQVDVTSPREVVLHAKTIGSTMVIILDKSGQS 135

Query: 109 MLNLDILI-----ERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVE 162
              +D+ +       D A L+  L++ + +   I+V   ++++VL G V     + +A+ 
Sbjct: 136 -AVMDVRVVAAATAMDAASLQTKLQQIMPNEKGIKVSTAAESLVLSGTVSDAVKADKAMA 194

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
           L+E +  +           KKV+N+L +A   QV L+V +AEV +++L ++G     + S
Sbjct: 195 LAEAYGGKDK--------DKKVINMLQVAAPQQVMLEVKMAEVSKNLLDKLGASFGASRS 246

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           + G + + A+ F     ++         + + +    + A  +   ++ LAEP + AISG
Sbjct: 247 NGGVAYAIASGFLSLTGADPLSPGGLLTITKGNTAIKVDAENKDGVVKILAEPNIIAISG 306

Query: 283 QSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           Q  SF +GG+       S+TG      ++   D+GV L FTPTVL  G I LR+  EVSE
Sbjct: 307 QEGSFLAGGKIFIPVPQSNTGGGSNVLTLEERDFGVGLKFTPTVLEEGMINLRVAPEVSE 366

Query: 339 PVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
              G   V     PS+ VR+  TTV+L  G +  +AGL+K+++ +     P+L +IPILG
Sbjct: 367 LNQGGTTVGGSVFPSFTVRRVATTVQLRDGQSFAIAGLIKNNVTENVRRFPILGEIPILG 426

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
           ALFR+S F  ++TE+    TP LVKP+   D + P D ++    A+ F   ++       
Sbjct: 427 ALFRSSSFQEDKTELLFVITPRLVKPLPP-DFALPTDKFTPPSKAEFFLNGKLEGKPAEP 485

Query: 456 EASEVEGQN 464
              E   Q+
Sbjct: 486 ATEESPAQS 494


>gi|46201037|ref|ZP_00207939.1| COG4964: Flp pilus assembly protein, secretin CpaC
           [Magnetospirillum magnetotacticum MS-1]
          Length = 480

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 146/472 (30%), Positives = 241/472 (51%), Gaps = 25/472 (5%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
                     P   +      ++        + + + + K + L +P  V++V++ +   
Sbjct: 20  MVITLGAPSGPGQAQRAGTPRSLLGATAASAESMQVPVGKSVDLTLPGAVREVVIGNSDI 79

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN- 135
           ADV+V SP  +++ G+ VGQ NV L+   G+ M  +D+ +  D   +   LR  + D   
Sbjct: 80  ADVMVRSPNLVHITGRAVGQTNVFLVDRAGRVMRRIDLNVSIDSQAVRDALRAVLPDERA 139

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           I VE V+D++ L G V+    ++ A  L+  F+++            K++NLL +  E Q
Sbjct: 140 INVEAVADSLYLSGSVKNDAAARDAKMLARRFVAEDA----------KLVNLLRVVNEQQ 189

Query: 196 VTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
           V L V +AE++R +LK++GF  +       I  S  G     ++  G    S    F   
Sbjct: 190 VLLHVKVAEIQRTVLKELGFGLTANKGIPLIGSSVLGSGSKTSSTVGLIDSSSTAIFGTA 249

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
            +    +    L+ LE    IRTL EP LTA+SG++A+  +GG+     +S + GA SV 
Sbjct: 250 TITGIGALAANLNILENQGLIRTLVEPNLTAVSGETATMLAGGELPIP-ISQTNGAVSVE 308

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELP 363
              YGV+L FTPTVL PGR+ L++ TEVS           ++  +P+++VR+A +TVELP
Sbjct: 309 FKPYGVLLSFTPTVLDPGRLSLKMSTEVSAIDNNNKTAISSSISVPAFKVRRAGSTVELP 368

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SGG+I++AGLL++DI     G+P L  +P+LG LFR++ F R ETE+ +  + ++V+PV 
Sbjct: 369 SGGSIMIAGLLQNDITSNITGLPGLMDLPVLGLLFRSNAFQRNETELVVILSAYVVRPVE 428

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG-QNYKGAIGFIYK 474
              L  P+D ++   D K F   R+   Y  +         + +G  G I +
Sbjct: 429 QPVLGTPNDGFAPSSDLKRFLLGRLQDTYTKRSRELPATPPSLQGPYGHIVQ 480


>gi|307300715|ref|ZP_07580490.1| type II and III secretion system protein [Sinorhizobium meliloti
           BL225C]
 gi|306904249|gb|EFN34834.1| type II and III secretion system protein [Sinorhizobium meliloti
           BL225C]
          Length = 466

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 129/468 (27%), Positives = 222/468 (47%), Gaps = 24/468 (5%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK--GKKISIGLNKVIILQ 61
           + R+  ++ + F F     VA    I  +  A  N   VEI     + I +   K + ++
Sbjct: 1   MTRSRGSLFAFFCFV----VALCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIR 56

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
                 ++++ DP  A V   + R+ Y+ G  +G  +V +   +   +  +DI +  D  
Sbjct: 57  AVQRFDEIVIGDPEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTK 116

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            L  T+R+ +  S+++V   +  +VL G       + +A +++  F              
Sbjct: 117 LLSSTIRQSVPGSSVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD----------- 165

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++V+N + I    QV L V   E+ RD+ K++G Q S   + S  S  F +       + 
Sbjct: 166 EEVINSIKITSSQQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSPRATSNTP 225

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G      + + +S +  + ALE     R LAEP L A SG+++SF +GG+     +S  
Sbjct: 226 AGSLIGSLIGEGYSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIP-ISEQ 284

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKAD 357
            G  +V+   +GV L FTPTVLS G I L I+ EVS         V    +P + VR+A 
Sbjct: 285 DGTITVSYKKFGVGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRAR 344

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T+V+L SG + ++AGLL+ +   + + +P L ++PILGALF +  + R ET++ I  TP 
Sbjct: 345 TSVDLKSGQSFMIAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPH 404

Query: 418 LVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           LVKP+   + ++ P D      +A+ FF   ++++           Q 
Sbjct: 405 LVKPIDPLKKVASPSDRTKRPTEAE-FFLGNIDEVEVNGRGRSASRQA 451


>gi|114799376|ref|YP_761691.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444]
 gi|114739550|gb|ABI77675.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444]
          Length = 535

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 151/540 (27%), Positives = 259/540 (47%), Gaps = 77/540 (14%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
           RT   +    + +  P+   L                +    +++++G++K +I+ +   
Sbjct: 2   RTIKALTCAAIVAILPAPFALAQTIPNGMGTSITKPGDQAVSRRVTLGVDKSMIVDLEAP 61

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
             DV++S+P  AD VV + + +   G   GQ N ++    G  +L+L+I++E D+A LE 
Sbjct: 62  AADVVISNPEIADAVVQTAQRIIFRGIKFGQTNALIFDRAGNTLLDLNIMVETDLAALEE 121

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
           T+ R I D+ +++E  + +V+L GMV  +  S +  +L + F  +S     A     +++
Sbjct: 122 TISRHIPDARVKIESFNGSVILTGMVDNLSQSDQVSQLVKAFFPES-----AGGGELQIV 176

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------------------- 218
           N+LN+   DQV L+V I E++R ++KQ+G   S                           
Sbjct: 177 NMLNVNAADQVMLEVRIVEMQRSVIKQLGINLSGATSFGELANQTLQQVFQGGLPLFFDP 236

Query: 219 -------------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---- 255
                                 SS+  S S ++ F  +  + GG     G  +  +    
Sbjct: 237 DSGEYNTTGQGTAVEMLQPAGPSSNTISGSASSGFNVQGQALGGISLETGYTNYNNGRLQ 296

Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 + A+ER   +RTLAEP + A+SG+SA F +GG+       +  G  +V    YG
Sbjct: 297 SSIGAAIDAMERVGIVRTLAEPNIVAMSGESAKFLAGGEFPVPVGQNQNGQITVEFKPYG 356

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG-------------------VNAGDMPSYRVR 354
           V L FTP VLS GRI L++ TEVSE                       +    +P+  VR
Sbjct: 357 VGLAFTPVVLSEGRISLKVSTEVSELTSQGAFQGAAQTITDGDGNTTIIQGATLPALSVR 416

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +A++ VELPSGG++++AGL+    +Q  + +P L K+PILG+LF++  F  EETE+ +  
Sbjct: 417 RAESVVELPSGGSMMMAGLISVKDRQTIDQLPGLKKLPILGSLFQSRDFLSEETELVVMV 476

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           TP+LV       +  P D Y+   DAK  FF ++N+ YG ++ + ++  +Y+  +GF+ +
Sbjct: 477 TPYLVGATNKASMVTPADGYANASDAKTIFFGKLNETYG-RDGAPIKPDDYRAPVGFMEE 535


>gi|302343419|ref|YP_003807948.1| type II and III secretion system protein [Desulfarculus baarsii DSM
           2075]
 gi|301640032|gb|ADK85354.1| type II and III secretion system protein [Desulfarculus baarsii DSM
           2075]
          Length = 466

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 119/476 (25%), Positives = 198/476 (41%), Gaps = 37/476 (7%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
            S    +A    I     A    +  E   G+ + +      ++ +P  ++ V V+D T 
Sbjct: 1   MSGFCRLAVAALIVAFAVATPASARAEARTGR-LEVAAGHSRLVDLPAPLKRVSVADETV 59

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           ADV+V +PR +Y+ G+  G  N+ +     + +    + + RD   L+    R +    I
Sbjct: 60  ADVLVINPRQIYVNGRKPGNTNITVWDRAERVIAAYAVGVGRDYTRLKAAFARVLPGEAI 119

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            V  +   +VL G V +    ++A  ++  F              ++V NLL +  + QV
Sbjct: 120 EVHELEGALVLAGSVSSESAREKAESIARLFEK------------ERVSNLLEVVDQKQV 167

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFV----------SEGGD 244
            LK+  AEV R   K++         +       +F  +  G                 +
Sbjct: 168 LLKLRFAEVNRQAAKRMNVNLGYWDPARPGNIFFTFLDNMTGPPSIDYSKGSIEFDLSAN 227

Query: 245 FSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
               G L+     +   L  L++    + LAEP L  +SG+ A+F +GG+          
Sbjct: 228 VGAWGGLNDSGRQYMAFLDILKQNGLAKILAEPNLVCVSGKKANFLAGGEFPIPVPGRD- 286

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADT 358
             T++    YGV L F P VL  G+I L ++ EVSE    P +  +   +P    R+A T
Sbjct: 287 -YTAIVFKKYGVQLTFLPKVLPNGKISLEVEPEVSELDYSPGVVTDGFVVPGLTTRRAST 345

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            +EL  G    +AGLLK D+ +     P L  +PILGALFR+S++   ETE+ I  TP +
Sbjct: 346 QLELGDGQGFAIAGLLKQDVTRSVSKWPFLGDLPILGALFRSSQYRNRETELLIVVTPHI 405

Query: 419 VKPVA-MRDLSRPDDHYSVEDDAKAFFFNRV---NKIYGPKEASEVEGQNYKGAIG 470
           V+P     D       +   DD   + + +    ++  G   A        +G  G
Sbjct: 406 VRPGDKTPDPLIGPRDFDDPDDMDFYLWGKTGGDDEPPGRAGAKAERSMEMEGRFG 461


>gi|193782542|ref|NP_435332.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|307319126|ref|ZP_07598556.1| type II and III secretion system protein [Sinorhizobium meliloti
           AK83]
 gi|193072997|gb|AAK64744.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|306895233|gb|EFN25989.1| type II and III secretion system protein [Sinorhizobium meliloti
           AK83]
          Length = 466

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 129/468 (27%), Positives = 222/468 (47%), Gaps = 24/468 (5%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK--GKKISIGLNKVIILQ 61
           + R+  ++ + F F     VA    I  +  A  N   VEI     + I +   K + ++
Sbjct: 1   MTRSRGSLFAFFCFV----VALCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIR 56

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
                 ++++ DP  A V   + R+ Y+ G  +G  +V +   +   +  +DI +  D  
Sbjct: 57  AVQRFDEIVIGDPEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTK 116

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            L  T+R+ +  S+++V   +  +VL G       + +A +++  F              
Sbjct: 117 LLSSTIRQSVPGSSVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD----------- 165

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++V+N + I    QV L V   E+ RD+ K++G Q S   + S  S  F +       + 
Sbjct: 166 EEVINSIKITSSQQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSPRATSNTP 225

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G      + + +S +  + ALE     R LAEP L A SG+++SF +GG+     +S  
Sbjct: 226 AGSLIGSLIGEGYSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIP-ISEQ 284

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKAD 357
            G  +V+   +GV L FTPTVLS G I L I+ EVS         V    +P + VR+A 
Sbjct: 285 DGTITVSYKKFGVGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRAR 344

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T+V+L SG + ++AGLL+ +   + + +P L ++PILGALF +  + R ET++ I  TP 
Sbjct: 345 TSVDLKSGQSFMIAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPH 404

Query: 418 LVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           LVKP+   + ++ P D      +A+ FF   ++++           Q 
Sbjct: 405 LVKPIDPLKKVASPSDRTKRPTEAE-FFLGNIDEVEVNGRGRSASRQA 451


>gi|16127175|ref|NP_421739.1| pilus assembly protein CpaC [Caulobacter crescentus CB15]
 gi|221235976|ref|YP_002518413.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus
           NA1000]
 gi|7208425|gb|AAF40192.1|AF229646_4 CpaC [Caulobacter crescentus CB15]
 gi|13424571|gb|AAK24907.1| pilus assembly protein CpaC [Caulobacter crescentus CB15]
 gi|220965149|gb|ACL96505.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus
           NA1000]
          Length = 560

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 145/502 (28%), Positives = 242/502 (48%), Gaps = 70/502 (13%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           A   V  I          + +   K  I+++P +V+D+LV++P  AD V+   R +Y+ G
Sbjct: 70  AEDQVARIVMTADQTAATLELAKGKSAIVELPSEVRDLLVTNPQIADAVLRDKRRIYIVG 129

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
              G  +       G+++L+L I + + +  L   L + + D+ I V  + D+VVL G V
Sbjct: 130 LAEGTTDAAFFDTAGRRILSLSIRVSQPVDQLAAMLGKILPDAKITVSPIRDSVVLSGTV 189

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           RT  +++ A  ++  F+           S +KV+N++++AG+DQV L+V I EV+R+++K
Sbjct: 190 RTASEAESAARIAAQFVG----------SPEKVLNMISVAGKDQVMLQVRIVEVQRNVIK 239

Query: 212 QIGFQ--------------------HSITGS----------------------SSGPSKS 229
           Q+G                      + + GS                       +GP  +
Sbjct: 240 QLGVDLNAVIGQLGETQYTFGMAPGYGVNGSLLGGVTGGYKMDTTKQPVMQTPCTGPGWT 299

Query: 230 FAA-----DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
             +       GG         S  G     S + ++ A ER   +RTLAEP L A+SG+S
Sbjct: 300 AGSLCPVVARGGGNSDTATIQSTAGDPGLNSAKGMIQAFERVGLVRTLAEPNLAAVSGES 359

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341
             F  GG+    T S ++G  ++    YGV L +TP VLS GRI L++ TEVSE      
Sbjct: 360 GKFLVGGEFPVPTGSDTSGKVTIEFKPYGVGLGYTPVVLSGGRISLKLSTEVSELSSLGA 419

Query: 342 ---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                    G     +P   VR+ ++TVELPSGG+++LAGLL+   ++  + +P ++ +P
Sbjct: 420 FSMSTGTSSGSTNLTVPGLSVRRVESTVELPSGGSLMLAGLLQQTTKETIDSLPGMTSMP 479

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           ILG+LFR+  F   +TE+ +  TP+++ P   ++L  P D      D       R+NK+ 
Sbjct: 480 ILGSLFRSRDFLNNQTELVVIITPYIIDPTRPQNLQTPADGLQFASDMGTVLLGRLNKVV 539

Query: 453 GPKEASEVEGQNYKGAIGFIYK 474
               A    G+ Y+G +G++ +
Sbjct: 540 KAP-AGANAGRAYQGPVGYVIE 560


>gi|302381756|ref|YP_003817579.1| type II and III secretion system protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192384|gb|ADK99955.1| type II and III secretion system protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 520

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 150/508 (29%), Positives = 248/508 (48%), Gaps = 68/508 (13%)

Query: 25  KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
            LP    A     + +       + I++       + +P D +DV+VS+P  A+  VHSP
Sbjct: 23  TLPSAVLAQDHAGSQTVAAGSGPRLINLPRGTSFAVDLPADARDVIVSNPAVAEANVHSP 82

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
           R + + G   G+ + + +   G+ +L L + ++  +  L+ TL R    + +  E V+D+
Sbjct: 83  RRITVIGIAPGETDAVFLDAAGRSILTLRVRVDAGVTALQDTLSRVAPGAQVHAEAVNDS 142

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           +VL G+V +   S++  +++  F+          S+ +KV+N+L IAG DQVTLKV I E
Sbjct: 143 IVLTGLVTSAAQSEQVAQVARAFV----------SAPEKVLNMLTIAGSDQVTLKVRIIE 192

Query: 205 VRRDILKQIGFQHSITGSSSGPSK---SFAADFGGKFVSEGG------------------ 243
           V+R+ +KQ+GF  +      G ++   S AA FG      GG                  
Sbjct: 193 VQRNAIKQLGFDTAAALGRVGDTQFLLSQAASFGVNGSLLGGISAGVSRNTTQNFQLQGP 252

Query: 244 -----------DFSVKGVLDRFSFE-----------------TVLHALERATAIRTLAEP 275
                       F+V G  D  +++                  ++ A ER   IRTLAEP
Sbjct: 253 CGPGFPADSLCPFTVDGPEDASNWDTAQPGTGPGSDDLNKGNAMIKAFERVGLIRTLAEP 312

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            LT+++G+SASF +GG+    T     G  ++    YGV L F P VLS GRI L+I  E
Sbjct: 313 NLTSVNGESASFLAGGEFPVPTGRDRDGNVTIEFKPYGVSLGFRPIVLSEGRISLQISAE 372

Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE               A ++    VR+   TVE+PSGG++++AGLL++  +Q  + +P
Sbjct: 373 VSELTQTGGITLGAGTSTALNIAGLNVRRVQNTVEIPSGGSMMIAGLLQESTRQAIDSLP 432

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            L  +P+LG LFR+  +   ETE+ +   P++V P +   L  P D   +  DA+  FF 
Sbjct: 433 GLGGLPVLGQLFRSRDYLSGETELVVIVEPYIVTPTSPNRLQTPADGLRIATDAQTIFFG 492

Query: 447 RVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           ++N+ YG    ++     ++G +G++ +
Sbjct: 493 QLNQAYGSPAPTDTASAGWQGPVGYVIE 520


>gi|110632971|ref|YP_673179.1| type II and III secretion system protein [Mesorhizobium sp. BNC1]
 gi|110283955|gb|ABG62014.1| type II and III secretion system protein [Chelativorans sp. BNC1]
          Length = 464

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 221/470 (47%), Gaps = 25/470 (5%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           + L R  F + ++  F               ++A  +   V + K   I +   K + ++
Sbjct: 10  KRLTRYVFAVCALAFFGCAFGT-------MDSSANGDSIQVSVAKDSAIRVARGKPLTVE 62

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +     ++++ DP  A +   +  + Y+ G+ +G   + L     + +   D+ +  D  
Sbjct: 63  IAEAFDEIVIGDPEIATINPLTDHSFYVLGQGLGTTGIALYDESKRLIGTFDVEVTLDTK 122

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            L  T+R+ +  SNI+V   +  +VL G       +++A +++  F              
Sbjct: 123 MLAGTIRQSVPGSNIKVTSANGRIVLSGSAPDAVAAEKASQIAARFAGD----------- 171

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V+N ++I    QV L V   E+ R + K++G + S    +SG   SF +D      + 
Sbjct: 172 EDVINTIDITSSQQVQLNVRFVEINRAVGKELGTKISAAYVTSGGGISFNSDPRASSNTP 231

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            GD     V D FS +  + ALE     R LAEP L A SG++ASF +GG+     VS  
Sbjct: 232 AGDLIGGLVSDGFSIDVAIEALEDRGVARRLAEPNLIARSGETASFLAGGEFPIP-VSEE 290

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKAD 357
            GA +V+   +GV L+FTPTVLS G I L I+ EVS         V    +P + VR+A 
Sbjct: 291 NGAVTVSYKKFGVGLNFTPTVLSDGLIALDIEPEVSSIDTTSSYRVGNIAIPGFTVRRAR 350

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T+++L SG + ++AGLL+   +   + +P L ++P+LGALF +  + R ET++ I  TP 
Sbjct: 351 TSIDLRSGQSFMMAGLLQSQNEINTQRVPGLGQLPVLGALFSSKAYQRRETDLVIIVTPH 410

Query: 418 LVKPVAMRD-LSRPDDHYSVEDDAKAFFFNRVN-KIYGPKEASEVEGQNY 465
           LV P+   + ++ P D      D + F  N    ++     A+     ++
Sbjct: 411 LVSPIPPGNKVATPADRTKPARDGEVFLGNVEEVRLQQRTAANAPSAGHF 460


>gi|326388864|ref|ZP_08210446.1| type II and III secretion system protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206464|gb|EGD57299.1| type II and III secretion system protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 565

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 132/462 (28%), Positives = 219/462 (47%), Gaps = 38/462 (8%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           +   L ++ P +   P           ++       + ++I + +  ++ +P ++ DV V
Sbjct: 38  LPAALSAATPHMKAKPRALAVLHTTPPMTPGVTAPARSLAISIGRGELVTLPGNMTDVFV 97

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           ++   ADV V S   +Y+FGK  G+  V      G  + + +I +  ++  ++  L   +
Sbjct: 98  ANENIADVQVKSGNQLYIFGKAGGETTVYASNGRGDVIWSANIRVGNNLDSIDQMLHMAM 157

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            +++I    +++TV+L G V   +D+  A  L + F+ +             V++ L +A
Sbjct: 158 PEAHIATATMNNTVLLTGTVSAPEDAAEAERLVKAFVGEKT----------NVISRLKMA 207

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------FGGKF----- 238
              QV L V  AEV R + + I    +   ++SG                 GG       
Sbjct: 208 TPLQVNLHVKFAEVSRTLTRSIQSNWTTADATSGLKFGLGQGRSFFPQYVPGGPLGMGTA 267

Query: 239 ----------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                     VS G   ++   +   SF   L   E    + TLAEP LTA+SG++A F 
Sbjct: 268 TTTGATAVSPVSTGTTLALASKVFGLSFLAALDLAESIGLVSTLAEPNLTALSGETAEFL 327

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVN 344
           +GG++    VSS  G   V   +YGV L +TPTVL+ GRI LR++ EVSE      + +N
Sbjct: 328 AGGEYPIP-VSSGLGTVPVQYKNYGVSLAYTPTVLANGRISLRVRPEVSELSSDGAVSLN 386

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+  VR+A+TT+EL SG + ++AGLLK+  Q     +P    +PILG+LFR++ + 
Sbjct: 387 GYSVPALSVRRAETTIELGSGQSFMIAGLLKNSSQNTIAKMPGAGDLPILGSLFRSTSYQ 446

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
           R ETE+ I  TP+LV PV   ++  P D +      K    N
Sbjct: 447 RGETELVIIVTPYLVNPVDPSEIHLPTDGFKSAGALKQILGN 488


>gi|115361033|ref|YP_778170.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
 gi|115286361|gb|ABI91836.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
          Length = 657

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 121/432 (28%), Positives = 212/432 (49%), Gaps = 18/432 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            +     +++ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+ 
Sbjct: 93  AVRDATSVTVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQ 152

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G     +D+ +  D   L+ +L++ +     I V   + T+VL G V   Q +Q+AV
Sbjct: 153 GRSGAC-RVIDVAVGADAGGLQSSLQQLMPGERDIHVSTAAGTIVLAGTVSNSQAAQQAV 211

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +++  +   +G           V+N+L +    QV L+V +AEV + ++ Q+G   +I G
Sbjct: 212 QIAHAYSDSAGEGAGGAGKGAGVLNMLAVTSPQQVMLEVKVAEVSKTLINQMGTAFNIQG 271

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                S +  ++      S G    +    +   F     A      ++ LAEP L  IS
Sbjct: 272 GFGSWSGALVSNLLAGVASAG----IFNKANNKPFSVAADAQNTDNLVKILAEPNLVTIS 327

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           GQ A+F +GG+       SS   T   ++   ++GV L FTPTVL+ GRI L++  EVSE
Sbjct: 328 GQEATFLAGGKIFIPVPQSSGTGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSE 387

Query: 339 PVIG------VNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                      N G    +P    R+A TTV++  G +  + GL+KD+     + IP + 
Sbjct: 388 LSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGSLKAIPGVG 447

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D +S   +   +    + 
Sbjct: 448 EVPVLGALFRSTSFQQDRTELIFLITPHLVRPLQTADVPLPTDSFSKPSEIDVYATGNME 507

Query: 450 KIYGPKEASEVE 461
              G ++A+   
Sbjct: 508 GRKGVRKATMQP 519


>gi|12620550|gb|AAG60826.1|AF322012_131 RhcC2 [Bradyrhizobium japonicum]
          Length = 484

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 125/476 (26%), Positives = 209/476 (43%), Gaps = 21/476 (4%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           L R  + +    L     + A+     +                  ++I  ++   + + 
Sbjct: 25  LNRLCYLLCGFALLFPLAASAETKRDGKGEMPRAAPG----STTGTLNITSSQGKTVHLS 80

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
                + V+DP  AD    S  T+++FGK  G+ ++  +  +G+ +  L I++ + +  L
Sbjct: 81  APAATIFVADPAIADYQAPSSSTIFVFGKKSGRTSLFALNENGEALAELRIVVTQPLEDL 140

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
              L+  + D  I+V       +L G+       + A +++E F+               
Sbjct: 141 RAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVEAARKVTEQFVGAGAP---------- 190

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           V+N + +AG  QV L V +AEV R  +K +    + +G + G   +     G      GG
Sbjct: 191 VVNKIQVAGSLQVNLSVRVAEVSRTAVKDLNINFTASGPN-GAFLATGKPGGSGRAGGGG 249

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
              +       +   VL AL        LAEP LTA+SG++ASF +GG+     +     
Sbjct: 250 TIGIGFSTGNINLSAVLDALASEHLASILAEPNLTAMSGEAASFLAGGEFPIPVM-QDNR 308

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359
             SV    +GV L F PTVLS  +I +R++ EVSE      + +N   +P+   R+A T 
Sbjct: 309 QVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSELSTEGEVKINGMAVPALSTRRASTV 368

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VEL SG +  + GL++ +        P L  +PILGALFR+S F + ETE+ I  TP++V
Sbjct: 369 VELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPILGALFRSSSFQKRETELVIVVTPYIV 428

Query: 420 KP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +P      +S P +  +   DA     N V +    ++A         G  GFI +
Sbjct: 429 RPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQGRDAPRASAPGLTGNAGFIIE 484


>gi|209515951|ref|ZP_03264812.1| type II and III secretion system protein [Burkholderia sp. H160]
 gi|209503609|gb|EEA03604.1| type II and III secretion system protein [Burkholderia sp. H160]
          Length = 431

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 115/443 (25%), Positives = 205/443 (46%), Gaps = 23/443 (5%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
             +       ++I      +L +P     V V+DP  ADV V +P T+++ GK  G   +
Sbjct: 3   GALAASGDPSLAIAAGGGEMLHLPEAAVAVFVADPDVADVHVPTPETVFVLGKKAGTTTL 62

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
             +G   + +L   +++  D   ++  L        + +     ++++ G V     +  
Sbjct: 63  FALGAHNRTILRETVVVSADTPSIQRMLDARFPQFQLTLTAAPGSLMVAGRVPDAAAADA 122

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            ++    +L             + ++N L +    QV L+V I EV R++ +Q+G   + 
Sbjct: 123 VMQSLTPYLHDK----------ETLVNRLTLTRPIQVHLRVRITEVDRNVTQQLGINWNA 172

Query: 220 TGSSS---GPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAE 274
            G S    G   +  A      +S  G FS+ G     +++ + VL AL++   I  LAE
Sbjct: 173 LGQSGNFIGGLFNGRAGSATTTLSSTGAFSILGAFQAGKWAIDGVLDALDQEGLITMLAE 232

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P LTA+SG++ASF +GG+         T + ++    YGV L FTPTVL+  RI L+++ 
Sbjct: 233 PNLTAMSGETASFLAGGEFPIPVPQGQTNSITIEFKPYGVSLDFTPTVLADNRISLKVRP 292

Query: 335 EVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE      + +++  +P+  VR+ +TTVEL SG +  + GLL+ +   +   +P L K
Sbjct: 293 EVSELDTTNGVTIDSIKVPALTVRRVETTVELSSGQSFAIGGLLQSNTSDVLAELPGLGK 352

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           +P+LG LF +  +   ++E+ +  TP++V+P     L +P D          +      +
Sbjct: 353 LPVLGKLFSSKSYLNNKSEVVVIVTPYIVQPAEPGRLRQPIDTIVHPSSDIEYVL----Q 408

Query: 451 IYGPKEASEVEGQNYKGAIGFIY 473
                +          GA GF+Y
Sbjct: 409 SRLGIDPLSGSVPRLVGAAGFVY 431


>gi|254229332|ref|ZP_04922749.1| putative phospholipid-binding domain family [Vibrio sp. Ex25]
 gi|262393417|ref|YP_003285271.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio sp. Ex25]
 gi|151938140|gb|EDN56981.1| putative phospholipid-binding domain family [Vibrio sp. Ex25]
 gi|262337011|gb|ACY50806.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio sp. Ex25]
          Length = 487

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 124/437 (28%), Positives = 209/437 (47%), Gaps = 24/437 (5%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
           ++++   +  GK +++  ++   L +    + V + DP   D++V     ++L GK +G 
Sbjct: 16  LSVNAATVQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNELFLIGKKLGT 75

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            NV +    G+ +   ++ +  D+  L+  L +F+ D NI V    + VVL G+V + Q+
Sbjct: 76  TNVSVWDRRGRLIEQFNVEVTHDLNTLKSKLYQFLPDENIEVHSAQEKVVLRGLVSSQQN 135

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
              AV+++ETF      ++  +SS      V+NLL+I G  QVTL+VT+AEV+R ++++ 
Sbjct: 136 MDTAVKIAETFALGEAADEEDDSSKDDDSMVINLLSIGGAQQVTLEVTVAEVQRTLVRRF 195

Query: 214 GFQHSITGSSSGPSKSFAADFGGKF-------VSEGGDFSVKGVL--DRFSFETVLHALE 264
                    S   +       GG         V    DF   G        F   L   +
Sbjct: 196 DSNFHFFQRSGDFTWGGTTAGGGIDGIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           +    + LAEP+LTA+SG  A F +GG+      +      ++   +YGV L F P +LS
Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNED--GITIDYKEYGVQLDFVPFILS 313

Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             RI L++   VSE                   +P    R A TT+EL  G TI +AGLL
Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            ++ + + +GIP  S +P+LG LF++  F   ETE+ I  TP L  P+  R ++ P D +
Sbjct: 374 SENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGF 433

Query: 435 SVEDDAKAFFFNRVNKI 451
              +D + +   +  ++
Sbjct: 434 VAPNDVEFYLLGKGAEL 450


>gi|323493503|ref|ZP_08098625.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
 gi|323312326|gb|EGA65468.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
          Length = 458

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 116/450 (25%), Positives = 201/450 (44%), Gaps = 38/450 (8%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
              + + +N+  ++ +P D + + +S+   AD    +   + +FG   G A + ++    
Sbjct: 24  AAPLEVTINQAKMINLPQDAKSIFISNTHVADYQPMTNTKIMVFGLQAGSATITILNAQE 83

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + + N  I +  D   L   +     +++++ E +   + L G V T   +   V +++ 
Sbjct: 84  RVIYNNKIRVTHDTFELNSLISSQFPEASVKSESLGGKLWLKGSVPTPVMAHSIVNIAKG 143

Query: 167 FLSQSGRNQYA----------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           +LS     Q +                  S  +++N L +    QV ++V IAEV R++ 
Sbjct: 144 YLSPPTAGQSSDSSSDSESSNNTSEQQGDSGNELVNQLVVTMPTQVNIRVRIAEVSRNVS 203

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
            ++G +            S  +  G    ++  D S  G   + +   ++ AL     + 
Sbjct: 204 NKLGIKWG----------SLESGMGSFLYTKAWDVSSWG---KPTLGALIDALASDGTMS 250

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP LTA+SG+ A+F  GG+     +   T   +V    +GV L+FTP VL P RI L
Sbjct: 251 ILAEPNLTAMSGEEANFLVGGEIPLPLIIGDT--ATVEYKPFGVNLNFTPVVLGPDRISL 308

Query: 331 RIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           R+  EVS   +     +N    PS+  R+A TT+EL SG +  L GLL+       + +P
Sbjct: 309 RVSPEVSSISVDNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQKLP 368

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF-- 444
            +  +P+LG LFR+S + R ETE+ I AT +LV+PV    +  P D      D +     
Sbjct: 369 GIGDMPVLGGLFRSSDYQRRETELIIIATAYLVEPVRNDAIPLPTDSLLPLSDLERLLAI 428

Query: 445 -FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
              R  ++ G    ++       G  GF Y
Sbjct: 429 PRKRDKQVKGKATYTDNRAPRLLGDNGFYY 458


>gi|16520026|ref|NP_444146.1| outermembrane protein RhcC2; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
 gi|2495099|sp|P55702|Y4XJ_RHISN RecName: Full=Uncharacterized protein y4xJ
 gi|2182718|gb|AAB91933.1| outermembrane protein RhcC2; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
          Length = 423

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 136/445 (30%), Positives = 204/445 (45%), Gaps = 30/445 (6%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
              +   I     +S  L K + L  P     + V+DPT AD    S RT+++FGK  G+
Sbjct: 2   PRAAPNSINATLNLSSSLGKTVHL--PAPAATIFVADPTIADYQAPSNRTIFVFGKKFGR 59

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            ++  +  +G+ +  L +++ + IA L   LR  + D  I V       +L G     + 
Sbjct: 60  TSLFALDENGEALAELHVVVTQPIADLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAEV 119

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
              A  ++E FL               ++N + +AG  QV L V +AEV R  LK +G  
Sbjct: 120 VDIAKRVTEQFLGDGAP----------IVNNIKVAGSLQVNLSVRVAEVSRSGLKALGIN 169

Query: 217 HSITGSSSGPSKSFA--ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            S  G                G     GG   +    D  S   VL AL +      LAE
Sbjct: 170 LSAFGQFGNFKVGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLAE 229

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P LTA+SG++ASF +GG+     +    G TSV    +GV L F PTVL    I + ++ 
Sbjct: 230 PNLTAMSGETASFLAGGEFPIPVL-QENGQTSVEFRRFGVSLEFVPTVLDNNLINIHVKP 288

Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE      + VN   +P+   R+ADT VEL SG + V+ GL++ ++       P L +
Sbjct: 289 EVSELSLQGAVQVNGIAVPAVSTRRADTVVELASGQSFVIGGLIRRNVNNDISAFPWLGR 348

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           IPILGALFR+S F +EE+E+ I  TP++V+P      +S P D  +            + 
Sbjct: 349 IPILGALFRSSSFQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAPA----------LG 398

Query: 450 KIYGPKEASEVEGQNYKGAIGFIYK 474
                + A   +  + KG +GFI +
Sbjct: 399 TPPRARAAISTDAPSVKGDLGFIIE 423


>gi|269966892|ref|ZP_06180965.1| Flp pilus assembly protein [Vibrio alginolyticus 40B]
 gi|269828559|gb|EEZ82820.1| Flp pilus assembly protein [Vibrio alginolyticus 40B]
          Length = 487

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 122/437 (27%), Positives = 204/437 (46%), Gaps = 24/437 (5%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
           ++++      GK +++  ++   L +    + V + DP   D++V     ++L GK +G 
Sbjct: 16  LSVNAATAQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNELFLIGKKLGT 75

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            NV +    G+ +   ++ +  D+  L+  L +F+ D NI V    + VVL G+V + Q+
Sbjct: 76  TNVSVWDRRGRLIEQFNVEVTHDLNTLKSKLYQFLPDENIEVHSAQEKVVLRGLVSSQQN 135

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
              AV+++ETF      ++  +SS      V+NLL+I G  QVTL+VT+AEV+R ++++ 
Sbjct: 136 MDTAVKIAETFALGEAADEEDDSSKDDESMVINLLSIGGAQQVTLEVTVAEVQRTLVRRF 195

Query: 214 GFQHSITGSSS-------GPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALE 264
                    S                      V    DF   G        F   L   +
Sbjct: 196 DSNFHFFQRSGDFTWGGTTAGGGIDGIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           +    + LAEP+LTA+SG  A F +GG+      +      ++   +YGV L F P +LS
Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNED--GITIDYKEYGVQLDFVPFILS 313

Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             RI L++   VSE                   +P    R A TT+EL  G TI +AGLL
Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            ++ + +  GIP  S +P+LG LF++  F   ETE+ I  TP L  P+  R ++ P D +
Sbjct: 374 SENARNVANGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGF 433

Query: 435 SVEDDAKAFFFNRVNKI 451
              +D + +   +  ++
Sbjct: 434 VAPNDVEFYLLGKGAEL 450


>gi|94309592|ref|YP_582802.1| type II and III secretion system protein [Cupriavidus metallidurans
           CH34]
 gi|93353444|gb|ABF07533.1| Flp pilus assembly protein secretin CpaC [Cupriavidus metallidurans
           CH34]
          Length = 620

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 221/447 (49%), Gaps = 21/447 (4%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
            + + +     P   A+A   N S   I     + + + K  ++ +P  V++  + +P  
Sbjct: 60  MTISMAPVPAAPSIAADARGPNCS-GAIRNESSVIVPIGKSQLIPLPEPVRNRTLGNPNV 118

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN- 135
               + SP+T+Y+ G++VG  N+I+ G  G   + +++++  D   L+ +L + +   + 
Sbjct: 119 VQATMVSPQTLYVLGRSVGTTNMIVQGRSGGCSI-INVVVNADSNGLQTSLAQLLPGESG 177

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           IRV   +D +VL G V + Q + +A+++++ + + +  +  AN     V+N++++    Q
Sbjct: 178 IRVMTAADNLVLTGSVSSSQAALQAMDIAQAYANAAQGD-GANGKKGGVLNMMSVDTPQQ 236

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V L+V +AEV + +L Q+        +  G   S+        ++           +   
Sbjct: 237 VMLEVKVAEVSKTLLNQL----GSAVNIQGGFGSWTGGVISNLLTGAAAGIFGSKANNKP 292

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVT--THD 311
           F   + A +  + ++ LAEP L  ISGQ ASF +GG+       S+   GA+++T    +
Sbjct: 293 FNLAIDAQKNDSLVKVLAEPNLVTISGQEASFLAGGKIYIPVAQSNALGGASTITLQEEE 352

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVEL 362
           +GV L FTPTVL+ GRI L++  EVSE                  +P    R+A TTV++
Sbjct: 353 FGVGLKFTPTVLANGRIHLKVSPEVSELSPTGATVSGSTLTGQTILPLITTRRASTTVQM 412

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
             G +  + GLL+D  +   + +P   ++P+LG LFR+++F ++ TE+    TP LVKP+
Sbjct: 413 RDGESFAIGGLLQDSARGSLKALPGAGEVPVLGTLFRSTQFQQDLTELVFIITPHLVKPM 472

Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVN 449
             ++   P D ++  D    +F   + 
Sbjct: 473 QTQNYPLPTDGFTTPDPLSLYFMGNME 499


>gi|150377247|ref|YP_001313842.1| type II and III secretion system protein [Sinorhizobium medicae
           WSM419]
 gi|150031794|gb|ABR63909.1| type II and III secretion system protein [Sinorhizobium medicae
           WSM419]
          Length = 466

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 125/450 (27%), Positives = 217/450 (48%), Gaps = 23/450 (5%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK--GKKISIGLNKVIILQ 61
           + R+  ++ + F       +A    I   ++A  N   VEI     + I +   K + ++
Sbjct: 1   MTRSRGSLFAFFCLV----LAVFMGIGVGSSASANGDSVEISSNFSRSIRVAKGKTVTIR 56

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
                 ++++ DP  A V   + R+ Y+ G  +G  +V +   +   +  +DI +  D  
Sbjct: 57  AVQRFDEIVIGDPEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTK 116

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            L  T+R+ +  SN++V   +  +VL G       + +A +++  F              
Sbjct: 117 LLSSTIRQSVPGSNVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD----------- 165

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++N + I    QV L V   E+ RD+ K++G + S   + S  S  F +       + 
Sbjct: 166 EEIINSVKITSSQQVQLNVRFVEINRDVGKELGTRISAAYAWSNGSVEFNSRPRATSNTP 225

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G      + + +S +  + ALE     R LAEP L A SG+++SF +GG+     VS  
Sbjct: 226 AGSLIGSLIGEGYSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIP-VSED 284

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKAD 357
            G  +V+   +GV L FTPTVLS G I L I+ EVS      +       +P + VR+A 
Sbjct: 285 DGQIAVSYKKFGVGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVRNISIPGFSVRRAR 344

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T+V+L SG + ++AGLL+ +   + + +P L ++PILGALF +  + R ET++ I  TP 
Sbjct: 345 TSVDLKSGQSFMIAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPH 404

Query: 418 LVKPVAM-RDLSRPDDHYSVEDDAKAFFFN 446
           LVKP+   + ++ P D      +A+ F  N
Sbjct: 405 LVKPMDPLKKVASPSDRTKRPTEAEFFLGN 434


>gi|172065273|ref|YP_001815985.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
 gi|171997515|gb|ACB68432.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
          Length = 656

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 123/432 (28%), Positives = 214/432 (49%), Gaps = 19/432 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            +     +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+ 
Sbjct: 93  AVRDATSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQ 152

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G     +D+ +  D   L+ +L++ +     I V   + T+VL G V   Q +Q+AV
Sbjct: 153 GRSGAC-RVIDVAVGADAGGLQSSLQQLMPGERDIHVSTAAGTIVLAGTVSNSQAAQQAV 211

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +++  + S S  +         V+N+L +    QV L+V +AEV + ++ Q+G   +I G
Sbjct: 212 QIAHAY-SDSAGDGGGAGKGAGVLNMLAVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQG 270

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                S +  ++      S G    +    +   F     A      ++ LAEP L  IS
Sbjct: 271 GFGSWSGALVSNLLAGVASAG----IFNKANNKPFSVAADAQNTDNLVKILAEPNLVTIS 326

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           GQ A+F +GG+       SS   T   ++   ++GV L FTPTVL+ GRI L++  EVSE
Sbjct: 327 GQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSE 386

Query: 339 PVIG------VNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                      N G    +P    R+A TTV++  G +  + GL+KD+     + IP + 
Sbjct: 387 LSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGVG 446

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D +S  ++   +    + 
Sbjct: 447 EVPVLGALFRSTSFQQDRTELIFLITPHLVRPLQTADVPLPTDSFSKPNEVDVYATGNME 506

Query: 450 KIYGPKEASEVE 461
              G ++A+   
Sbjct: 507 GRKGVRKATMQP 518


>gi|304320647|ref|YP_003854290.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503]
 gi|303299549|gb|ADM09148.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503]
          Length = 494

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 144/502 (28%), Positives = 239/502 (47%), Gaps = 42/502 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           MR +      +    L  + PS+A+              +       +++ + L K  I+
Sbjct: 5   MRKILSVMAGLAGAVLIGTGPSMAQPGGSTPLEFETTYDAGGNGLASREVLLPLGKAAII 64

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           ++P    D++VSDP   + V+ +P+ ++L G+  GQAN         Q+LNL+I +E+D 
Sbjct: 65  ELPRPATDIIVSDPDIVEAVIRTPQRVFLMGREAGQANAFFFDRANNQILNLEIRVEQDA 124

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             +   + + + ++ I VE ++  V++HG V    D+QRA E++  F  +          
Sbjct: 125 DTIRELMTKLVPNARISVESLNGNVIIHGTVDNASDAQRAGEIASRFAGE---------- 174

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFG 235
               +N+L +    QV LK+ I E++R +++Q+G   +        +  FA     A  G
Sbjct: 175 -DNFVNMLKVREPSQVLLKIKIVEMQRRLVRQLGIDLNGVAQVDRSAIEFAVQNSFAISG 233

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   + S  G  D  + +      E+   ++TLAEP++ A+SG++ASF +GG+   
Sbjct: 234 QSLGGINANLSTPGFGDITNLDFAFDIFEQNGLVKTLAEPSIVALSGRNASFLAGGEFPV 293

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------------- 341
              S + G  SVT   +GV L F P V S  RI L + TEVS+                 
Sbjct: 294 PEAS-ANGTPSVTFKPFGVQLEFQPVVYSKNRIQLTLATEVSDVSNVNGLSIAGATQAEE 352

Query: 342 ----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
                           +P    R A TTVELPSGG++ LAGLL++DI ++ +G+P L + 
Sbjct: 353 DPDTGEIIEQTFEGFIVPGTVSRSAATTVELPSGGSLALAGLLQEDINEVIDGVPGLKET 412

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P+LGALFR+  F  ++TE+ I ATP+LV+P  +  L+ P   Y+     ++    ++   
Sbjct: 413 PVLGALFRSQEFQSQQTELVIIATPYLVEPTDLAALTDPAQGYAPPSPVQSVILGQLESA 472

Query: 452 YGPKEASEVEGQNYKGAIGFIY 473
           YG +     + Q   G IGFI 
Sbjct: 473 YGVRGRKARDAQ-LSGPIGFIL 493


>gi|329890996|ref|ZP_08269339.1| bacterial type II and III secretion system family protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328846297|gb|EGF95861.1| bacterial type II and III secretion system family protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 522

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 138/507 (27%), Positives = 250/507 (49%), Gaps = 70/507 (13%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
              +   A    +       + +++       + +P D +DV++S+P  A+ ++HSPR +
Sbjct: 26  AASDGARAQTRAAITAGSAPQMVNLPRGTSFAVDLPADARDVIISNPAVAEAMLHSPRRI 85

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
            + G   G+ + + +   G+ +L L + ++  ++ L+ TL R    SN+R E V+D+++L
Sbjct: 86  TMIGLAGGETDAVFLDASGRTILALRVRVDAGVSALQDTLARVAPGSNVRAEAVNDSIIL 145

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G+  +  +++RA +++  F+          S+ +KVMN++ +AG DQVTLKV + EV+R
Sbjct: 146 TGVAASPLEAERAAQVARAFV----------SAPEKVMNMIAVAGSDQVTLKVRVVEVQR 195

Query: 208 DILKQIGF------------QHSITGSSS-GPSKSFAADFGGKFV--------------- 239
           + +KQ+GF            Q  +  S++ G + SF     G                  
Sbjct: 196 NAIKQLGFDTQAVIGRVGDTQWLLGNSATWGVNGSFLGGLAGGIARDTTKNFQMQVPCVG 255

Query: 240 -----------------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                                        +  G       E +L A ER   +RTLAEP 
Sbjct: 256 PGWPEGAMCPVTVDGSPGDPSNWDTAKPGTGPGSDGLNKGEAMLKAFERVGLVRTLAEPN 315

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           LT+++G++ASF +GG+          G  +V    YGV L F P VLS GRI L+++ EV
Sbjct: 316 LTSVNGEAASFLAGGEFPVPAGRDREGQITVEYKPYGVGLSFRPVVLSEGRISLQVKVEV 375

Query: 337 SEPVI---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              ++  +P   VR+++ T+ELPSGG++++AGLL++  +Q  + +P 
Sbjct: 376 SELTPNGGLTIGAGTPSSITLPGLTVRRSENTIELPSGGSMMIAGLLQESTRQAIDALPG 435

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           ++ +P+LG LFR+  +   ETE+ +   P++V P +   +  P D   +  DA+  FF +
Sbjct: 436 MTNLPVLGQLFRSRDYVMGETELVVIVEPYIVNPTSPDRMQTPADGLRIAQDAQTIFFGQ 495

Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +N++YG    +   G  ++G +G++ +
Sbjct: 496 LNQVYGSPAPAAQPGAGWRGPVGYVIE 522


>gi|84386797|ref|ZP_00989822.1| type II and III secretion system protein [Vibrio splendidus 12B01]
 gi|84378325|gb|EAP95183.1| type II and III secretion system protein [Vibrio splendidus 12B01]
          Length = 465

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 119/460 (25%), Positives = 211/460 (45%), Gaps = 45/460 (9%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
                   + +N+  ++++P   + + +S+   A+    +   + +FGK  G A + ++ 
Sbjct: 21  ASTASTFDVTINEARMIRLPEKAKSIFISNTHIANYQTLTNTKVMIFGKQAGSATITVLN 80

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
              + +    I +  +       ++    ++++  E +   + L G V +   +   V L
Sbjct: 81  EQERVIYTNKIRVTHNSREFNELVKNKFPEASVNAESLGGKLWLKGRVPSPMMAHNIVSL 140

Query: 164 SETFLS-----------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           ++ +LS                        + +NQ    +  +++N L +   +QV ++V
Sbjct: 141 AKGYLSPIVGSTEQQESSNSQGNSNNSSSSTNQNQQTQLNDDELINQLVVTMPNQVNIRV 200

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            IAEV R++  ++G +    GS +G    F+        S G          + S   ++
Sbjct: 201 KIAEVSRNVSNKLGIKW---GSIAGGVGQFSFSKLPNVSSWG----------KPSITALI 247

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            AL     +  LAEP LTA+SG+ A F  GGQ     +++ T  T +   D+GV L+FTP
Sbjct: 248 DALATNGMMSVLAEPNLTAMSGEDAEFLVGGQVPLPLITADT--TQIEYKDFGVKLNFTP 305

Query: 321 TVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TVLS  RI L++  EVS   I     +N  + PS+  R A TT+EL SG +  L GLLK 
Sbjct: 306 TVLSQNRISLKVNPEVSNISIESQQVINGTNFPSFTTRSASTTIELASGQSFALGGLLKS 365

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           +  +  + +PL+ +IP+LG+LFR++ F R ETE+ I  T +LV+P     +  P D    
Sbjct: 366 EDIEQLQKVPLIGEIPVLGSLFRSTEFTRRETELIIIVTAYLVQPTRSDSMPLPTDGLIP 425

Query: 437 EDDAKAFF-FNRVNKIYGPKEASEVEGQNYK--GAIGFIY 473
             D +    + R  +     +A+  + Q  +  G  GF Y
Sbjct: 426 LSDVERLLAWPREQQKTSNNKATYTDNQKPRLLGDNGFYY 465


>gi|149912019|ref|ZP_01900613.1| putative membrane protein [Moritella sp. PE36]
 gi|149804918|gb|EDM64952.1| putative membrane protein [Moritella sp. PE36]
          Length = 473

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 122/460 (26%), Positives = 208/460 (45%), Gaps = 42/460 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
           + + + + LNK  ++++P   + + ++  + AD    +   + +FGK  G  ++ ++   
Sbjct: 24  QAQTLDVVLNKARLIELPKTAKSIFIASSSIADYQTLTNTKIMVFGKKTGSTSLYVLDAK 83

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
              + +  + +  ++  L   + +   D+    E  +  + L G V T   +++ V LSE
Sbjct: 84  ENVIYSATVKVSHNVTELNELIHKEFPDAIFNAESTAGKLFLKGQVPTPSMAEKIVRLSE 143

Query: 166 TFLS--------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            ++S                    Q  +   +N  + +++N L +   +QV L++ IAEV
Sbjct: 144 GYVSTLASTESSDSQQSGNAQSSTQPTQPAASNVDNDELINQLQVTMPNQVNLRIRIAEV 203

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            R +  ++G +    G  +G + +F  ++GGK                     ++ AL  
Sbjct: 204 SRKVSNKLGIKWGSQGFGTG-TFAFLDNYGGK-------LGGVNPASWADLSVIVDALAT 255

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              +  LAEP LTA+SG+ ASF  GG+     V S T   +V    +GV L F PTVLS 
Sbjct: 256 NGMMSVLAEPNLTAMSGEEASFLVGGEIPIPLVYSDT--ATVEYKTFGVRLDFKPTVLSA 313

Query: 326 GRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            RI L++ TEVS      N        +   P++  R+A TT+EL SG +  L GLL+  
Sbjct: 314 NRISLKVATEVSTVSSETNVQIGGTQGSSSFPTFVTRRASTTIELASGQSFALGGLLQSK 373

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +  + +PLL  IP+LGALFR++ F REETE+ I AT +LV+P     L  P D     
Sbjct: 374 DIEQLQKMPLLGDIPVLGALFRSNEFQREETELIIIATAYLVQPTRADILPLPTDGLIPM 433

Query: 438 DDAKAFF----FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            D +         +       +  ++       G  GF Y
Sbjct: 434 SDVERLLAWPVSKQATNATDNESRTDNRQPRLLGDNGFYY 473


>gi|197106459|ref|YP_002131836.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1]
 gi|196479879|gb|ACG79407.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1]
          Length = 484

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 116/430 (26%), Positives = 203/430 (47%), Gaps = 20/430 (4%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
           F++  +   +     A  + +  + V  G   ++++   K  ++++      V ++DP  
Sbjct: 4   FAAIAAALSVGAGTLAPQSALAAAAVVAGPSSELAVEAGKGRLIRLDRPAATVFIADPKI 63

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           ADV V SP  +Y+ GK  G  ++  +    + + +L + +  D A L+  L+R   +S I
Sbjct: 64  ADVQVKSPTLVYVLGKAPGATSLFALDAGERMIADLAVNVGIDTARLDQALKRHAPNSQI 123

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +VE V   ++L G   +  +    + ++  F+   G  +       +++N + +   +Q+
Sbjct: 124 QVESVDGALILSGKAGSAAEGADILRIAAEFVPGEGEARAG-----RLINRIVVEQPNQI 178

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------FGGKFVSEGGDFSVK 248
            L V +AEV +   + +G      G         A              F    G  ++ 
Sbjct: 179 NLHVRVAEVSKQAREVLGVNWDAMGLLGEGMVGLATGRQIFTNPASRETFSRLNGTDTIV 238

Query: 249 GVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           G           ++ AL++   ++ LAEP LTA+SG+ ASF +GG++            +
Sbjct: 239 GSYQDGDLDLNVLVDALKQKGLVKVLAEPNLTAVSGEPASFLAGGEYPIPVPQRGEDLIT 298

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVEL 362
           +    +GV L F  TVL  GRI L ++ EVS+      I V    +P+   R+A+TTVEL
Sbjct: 299 IDYKQFGVSLSFVATVLDGGRISLNVRPEVSQLSEAGAITVQGLTVPALTTRRAETTVEL 358

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            SG +  +AGLL++   +    +P L  IP+LG LFR+  F + E+E+ I  TP+LVKP 
Sbjct: 359 GSGQSFAIAGLLQNTSNETLRKLPGLGDIPVLGNLFRSKEFQKNESELVIIVTPYLVKP- 417

Query: 423 AMRDLSRPDD 432
           A R L+ P D
Sbjct: 418 ASRTLATPAD 427


>gi|77919345|ref|YP_357160.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380]
 gi|77545428|gb|ABA88990.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380]
          Length = 507

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 124/490 (25%), Positives = 211/490 (43%), Gaps = 50/490 (10%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
            F  +  + LF+   +   +  +                    ++IG ++++ ++ P   
Sbjct: 12  CFLGLFCLALFTGTAAADDIEHL-----------------TLDVNIGGSELVEIREPSQR 54

Query: 67  QDVLVSDPTKADVVVHSPR--TMYLFGKNVGQANVILIGHDGKQMLNL-DILIERDIAHL 123
             +L+S+          P    +Y  GK +G + V +     +Q+  + D+ +  D+  L
Sbjct: 55  MKILISNGDIIGARPLRPNLINVYNLGKKIGFSRVTVWDDAARQVRAIIDVSVNLDLTPL 114

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           +  +       NI+V      VVL G V + +  ++ + L+ETFL +      +   + K
Sbjct: 115 KQKIGELYPHENIKVYASETGVVLSGTVSSPEVVEQVIRLTETFLPKKAEASTSGKGTGK 174

Query: 184 ----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------ 233
               + NLL++ G  QV L+V  AEV R   +         G                  
Sbjct: 175 SGSGITNLLSVGGVQQVMLEVKFAEVTRSSGRDWQAALGFNGLGDNSGLVAGVGGISGDI 234

Query: 234 ----FGGKFVSEGGDFS------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
               F GK  S   +F+          +    F + L  LE     R LAEP L  +SGQ
Sbjct: 235 SGGDFTGKLGSVLLNFADFASNPANIFVQMGDFTSALRFLEDEGLARILAEPRLVTMSGQ 294

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            ASF +GG+             ++   ++GV L FTP V+S G+I LR+   VS+     
Sbjct: 295 EASFLAGGEFPIPVP--DEDGITIEFREFGVSLRFTPVVMSDGKISLRVAPSVSDIASTS 352

Query: 344 --------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                      ++P+   RK +TTV+L  G T+ LAGLL+D +++    IP L  +PILG
Sbjct: 353 SIPSSITGTTYNVPNLTTRKLETTVQLYDGQTLALAGLLQDTLRESVSKIPGLGDLPILG 412

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
           ALFR++ + +E+T++ IA TP LVKP     LS P ++    +  + +   R+     P 
Sbjct: 413 ALFRSTSYTQEKTDLLIAVTPHLVKPSKEGTLSFPGEYMRPPNRLEFYLEGRLEGRRFPN 472

Query: 456 EASEVEGQNY 465
           + S +   ++
Sbjct: 473 DPSALSQHSF 482


>gi|312883754|ref|ZP_07743473.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368503|gb|EFP96036.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 460

 Score =  318 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 117/452 (25%), Positives = 201/452 (44%), Gaps = 40/452 (8%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + + + +N+  ++ +  D + + +S+   AD    +   + +FG   G A + ++    
Sbjct: 24  AEPLEVNINEAKMINLSQDAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITILNAQE 83

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + + N  I +  D   L+  +     ++++  E +   + L G V T   +   V +++ 
Sbjct: 84  RVIYNNKIRVVHDTKELDSLIAAQFPEASVHSESLGGKLWLKGNVPTPVMAHSIVSVAKG 143

Query: 167 FLSQSGRNQY---------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           +LS    N                  N +  +++N L +    QV ++V IAEV R++  
Sbjct: 144 YLSPVTANAQSEKGSTSPDSSTHSRGNENEDELINQLVVTMPTQVNIRVRIAEVSRNVSN 203

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           ++G +            S     G    ++  D S  G   + +   ++ AL     +  
Sbjct: 204 KLGIKWG----------SVGEGIGSFLYTKAWDVSSWG---KPTLSGLVDALASDGTMSI 250

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP LTA+SG+ ASF  GG+     ++  T   +V    +GV L+FTP VL P RI LR
Sbjct: 251 LAEPNLTAMSGEEASFLVGGEIPLPLINGDT--ATVEYKPFGVNLNFTPVVLGPDRISLR 308

Query: 332 IQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  EVS         +N    PS+  R+A TT+EL SG +  L GLL+       + +P 
Sbjct: 309 VSPEVSSVSVSNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQKLPG 368

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF-- 445
              IPILG LFR++ + R+ETE+ I AT +LV+PV    L  P D+     D +      
Sbjct: 369 AGDIPILGGLFRSNEYQRKETELIIIATAYLVEPVRNDTLPLPTDNLLPRSDLERLLVAF 428

Query: 446 ----NRVNKIYGPKEASEVEGQNYKGAIGFIY 473
                +  ++ G    ++       G  GF Y
Sbjct: 429 PRKRGKQKQVKGKDTYTDNRAPRLLGDNGFYY 460


>gi|13475417|ref|NP_106981.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
 gi|14026169|dbj|BAB52767.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
          Length = 481

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 122/480 (25%), Positives = 212/480 (44%), Gaps = 35/480 (7%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           F+  M+    S   ++     + +A    I++S+  +    ++ + +++ + + V   + 
Sbjct: 4   FWVRMAAVALSCFATLPTWSLVADAADRFIDVSNPSV---HRVFLPMSQSVTIAVNATLG 60

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           D++V D   AD    + RT+Y+ GK  G   V L   + + +  + I +  D++ +   +
Sbjct: 61  DIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSPEKRSLGVIQIEVGVDVSDMAQAI 120

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
           R+    S I V  V+  V L G V+        +E+++ +                ++N 
Sbjct: 121 RQVAPRSRIEVASVNGRVRLGGHVKDGVTMAAILEVAKQY------------GPDDIINS 168

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------------ADF 234
           + I    QV L+V I E +R+  + +G       S S                      F
Sbjct: 169 VTIDDSQQVNLEVRILEAKRNAGRDLGVSIRSNNSRSTTIVGTGIAAVDKDNVVLGTGGF 228

Query: 235 GGKFVSEGGDFSV---KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
               +S    F     + + +    +  + ALE   A+RTLA P LT +SG+ ASF +GG
Sbjct: 229 LSDLLSTSTPFGALLTRVIDNNIKVDLYIEALEAKGAVRTLANPNLTTLSGEQASFNAGG 288

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           +   +T+    G  S+    +GV L FTP VL  G+I + +  EVS+      AGD P +
Sbjct: 289 EVPIRTL-DKNGEISIVYKQFGVNLLFTPVVLDDGKIHMNLAPEVSDLNGFTTAGD-PIF 346

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             RK  T VEL  G +  + GLL     +L+  +P L ++P++G LFRNS   +EETE+ 
Sbjct: 347 TNRKLSTVVELRDGQSFAVGGLLSSRTTKLQNQVPWLGQVPVIGTLFRNSSNQKEETELV 406

Query: 412 IAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
           +  TP +V+PV     L+ P D     +D + F   ++ ++          G    G  G
Sbjct: 407 VIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQL-EVNKDMIRRYETGDGVTGPYG 465


>gi|46204251|ref|ZP_00050268.2| COG4964: Flp pilus assembly protein, secretin CpaC
           [Magnetospirillum magnetotacticum MS-1]
          Length = 472

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 132/434 (30%), Positives = 217/434 (50%), Gaps = 24/434 (5%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           L+     ++S       P+     P   A     + ++   G+ +++ +   + +I+ +P
Sbjct: 7   LRTIVLALLSAACLGQVPARRAKTPDCPARPRSDDRAERS-GQSRRVELSKGRSLIVDLP 65

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            D ++V V++P  A+ VV S R ++L G   G  ++ ++  +G+Q+  LD+ I RDI  L
Sbjct: 66  RDAKEVFVANPAVANAVVRSSRKLFLIGIENGATSIFVMDAEGRQIAALDVTIARDINVL 125

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
             +L++ +   +I V+ V D++VL G V +  ++Q+A++++              ++   
Sbjct: 126 RQSLQQSLPGRHIDVKAVGDSLVLSGGVSSASEAQQAIDIANA--FVGIAGGAGGAARGA 183

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----QHSITGSSSGPSKSFAADFG---- 235
           V+N L I  +DQV ++VT+ EV R ++KQ G       S              + G    
Sbjct: 184 VINNLTIRNKDQVMIRVTVVEVARSVIKQFGISTTGNWSALNPLDSTGNFLTNNTGFPLT 243

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G F   G   +       FS +  L A E+A   R LAEPTLTAISG++A FT+GG+   
Sbjct: 244 GAFTPSGNALTASVRSGGFSLQATLRAFEQAGVSRILAEPTLTAISGEAAKFTAGGEIPV 303

Query: 296 KT-----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------ 344
                     S    S+    YGV L FTP VL+  RI +R+ T+V+E     +      
Sbjct: 304 PANCSVGAVGSACTISLVYKPYGVSLSFTPVVLAENRISIRVATDVTELDTQNSFSYNLN 363

Query: 345 --AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                +P+ R R ++TTVEL SG T++ AGL++   +    G+P L  +PILGALFR+  
Sbjct: 364 GRVVPVPATRRRNSETTVELASGATMMTAGLIQQQNKGTINGLPGLMNLPILGALFRSRD 423

Query: 403 FNREETEIFIAATP 416
           F R+E E+ I  TP
Sbjct: 424 FQRDENELMILVTP 437


>gi|261251598|ref|ZP_05944172.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
 gi|260938471|gb|EEX94459.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
          Length = 457

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 121/449 (26%), Positives = 205/449 (45%), Gaps = 37/449 (8%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
              + + +N+  ++ +P D + + +S+   AD    +   + +FG   G A + ++    
Sbjct: 24  AAPLEVNINEAKMINLPQDAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITILNAQE 83

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + + N  I +  D   L+  +     ++++  E +   + L G V T   +   V +++ 
Sbjct: 84  RVIYNNKIRVVHDTKELDSLIAAQFPEASVHSESLGGKLWLKGNVPTPVMAHSIVSVAKG 143

Query: 167 FLS---------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           +LS                S      + +S +++N L +    QV ++V IAEV R++  
Sbjct: 144 YLSPVIAPQQSENGSTSSDSSTQNSGSDNSDELVNQLMVTMPTQVNIRVRIAEVSRNVSN 203

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           ++G +            S  A  G    ++  D S  G   + +   ++ AL     +  
Sbjct: 204 KLGIKWG----------SLQAGMGSFLYTKAWDVSSWG---KPTLGALVDALASDGTMSI 250

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP LTA+SG+ ASF  GG+     ++  T   +V    +GV L+FTP VL P RI LR
Sbjct: 251 LAEPNLTAMSGEDASFLVGGEIPLPLINGDT--ATVEYKPFGVNLNFTPVVLGPDRISLR 308

Query: 332 IQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  EVS    +    +N    PS+  R+A TT+EL SG +  L GLL+       + +P 
Sbjct: 309 VSPEVSSVSVDNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQKLPG 368

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF--- 444
              IPILG LFR+S + R+ETE+ I AT +LV+PV    L  P D+     D +      
Sbjct: 369 AGDIPILGGLFRSSEYQRKETELIIIATAYLVEPVRNDALPLPTDNLLPLSDLERLLAIP 428

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            +R  ++ G    ++       G  GF Y
Sbjct: 429 RSRGKQVKGKDTYTDNRAPRLLGDNGFYY 457


>gi|237509564|ref|ZP_04522279.1| type II/III secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|235001769|gb|EEP51193.1| type II/III secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 690

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509

Query: 448 VNKIYGPKE 456
           +    G ++
Sbjct: 510 MEGRGGLRQ 518


>gi|13471032|ref|NP_102601.1| secretory protein [Mesorhizobium loti MAFF303099]
 gi|14021776|dbj|BAB48387.1| probable secretory protein [Mesorhizobium loti MAFF303099]
          Length = 461

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 124/440 (28%), Positives = 210/440 (47%), Gaps = 22/440 (5%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           M+  L +   ++  LP + +A+  ++ +S  +      I +   K   +        +++
Sbjct: 1   MAAALVAG--AMLALPGVAKADNDIVYVSATKNA---SIKVAKGKPKTIVTNAAFYQIVI 55

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
            DP  A+V   + ++ Y+ G N+G   + L     + +  +DI +  D   L  T+R  +
Sbjct: 56  GDPEIANVNPLTDKSFYVLGNNLGTTGIALFDEKKQLVGTVDIEVTLDTDQLASTIRASV 115

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            D+ I+V   +  VVL G       +++A +++  F           S +++V+N +NI+
Sbjct: 116 PDAKIKVGSANGRVVLSGEADDAVAAEKANKIATRF-----------SGTEEVINSVNIS 164

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV L V   E+ R   + +G ++S   +     +  + D G    +  G+   + + 
Sbjct: 165 SSQQVQLNVRFVEINRQAGQDLGAKYSANFAYGFGGRDVSLDPGTVPAAGTGEIIGRLLS 224

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +  S +  + ALE     R LAEP L A SG++ASF +GG+     VS   G  SV+   
Sbjct: 225 NGVSIDIAIKALEERGLARRLAEPNLIARSGETASFLAGGEFPIP-VSEDNGKISVSYKK 283

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTVELPSGGT 367
           YGV L FTPTVL  G + L I  EVS      +       +P + VR+A T+V+L +G +
Sbjct: 284 YGVSLDFTPTVLKDGLVSLDIAPEVSSIDASSSYNIGTISVPGFIVRRAKTSVDLKNGQS 343

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RD 426
            ++AGLL+         IP L K+P+LGALF +  + R ET++ I  TP+LVKPV   + 
Sbjct: 344 FMIAGLLQSQNDITTSRIPGLGKMPVLGALFSSKSYQRRETDLVIIVTPYLVKPVDPSKK 403

Query: 427 LSRPDDHYSVEDDAKAFFFN 446
           +  P D      +   F  N
Sbjct: 404 MVEPTDGTRPASNVDYFLNN 423


>gi|148976307|ref|ZP_01813031.1| type II and III secretion system protein [Vibrionales bacterium
           SWAT-3]
 gi|145964401|gb|EDK29656.1| type II and III secretion system protein [Vibrionales bacterium
           SWAT-3]
          Length = 464

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 118/459 (25%), Positives = 213/459 (46%), Gaps = 44/459 (9%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
                 + + +N+  ++++P   + + +S    AD    +   + +FGK  G A + ++ 
Sbjct: 21  ASAASALDVTINEAKMIRLPEKAKSIFISSTHIADYQTLTNTKVMVFGKRAGSATITVLN 80

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
              + +    I +  +       ++    ++++  E +   + L G V +   +   V L
Sbjct: 81  EQERVIYTNKIRVTHNSREFNELVKNKFPEASVNAESLGGKLWLKGRVPSPMMAHNIVSL 140

Query: 164 SETFLS----------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
           ++ +LS                         ++Q  +S  ++++N L +   +QV ++V 
Sbjct: 141 AKGYLSPIVNQTEQKEGSNTNKNNSSDSALTQSQPTSSKEEELINQLVVTMPNQVNIRVK 200

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           IAEV R++  ++G +            S A   G  + ++  + S  G   + S  T++ 
Sbjct: 201 IAEVSRNVSNKLGIKWG----------SLAGGVGQFYFAKFPNVSSWG---KPSITTLVD 247

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL     +  LAEP LTA+SG+ A F  GGQ     +++ T  T +   D+GV L+FTPT
Sbjct: 248 ALASNGMMSVLAEPNLTAMSGEDAEFLVGGQVPLPLITADT--TQIEYKDFGVKLNFTPT 305

Query: 322 VLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VLS  RI L++  EVS   I     +   + PS+  R A TT+EL SG +  L GLLK +
Sbjct: 306 VLSQNRISLKVNPEVSNVSIDGQQVIQGANFPSFTTRSASTTIELASGQSFALGGLLKSE 365

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +  + +PL+++IP+LG+LFR++ F R ETE+ I  T +LV+P     +  P D     
Sbjct: 366 DIEQLQKVPLVAEIPVLGSLFRSTEFTRRETELIIIVTAYLVQPTRSDSMQLPTDGLIPL 425

Query: 438 DDAKAFF-FNRVNKIYGPKEASEVEGQNYK--GAIGFIY 473
            D +      R+ +     + +  + Q  +  G  GF Y
Sbjct: 426 SDVERLLALPRIQRKRTHDQDTYTDNQKPRLLGDNGFYY 464


>gi|329847253|ref|ZP_08262281.1| bacterial type II and III secretion system family protein
           [Asticcacaulis biprosthecum C19]
 gi|328842316|gb|EGF91885.1| bacterial type II and III secretion system family protein
           [Asticcacaulis biprosthecum C19]
          Length = 535

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 150/526 (28%), Positives = 244/526 (46%), Gaps = 69/526 (13%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
             T+++    ++                +   +     + + + +   +  ++ +P D  
Sbjct: 20  LMTLLATGAHATGEPKPYNSLKSGGGGGMAVQTQTSQARVQVLRLPKGRSAVVDLPTDAA 79

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           DV VS+P  AD V+ +PR +++ G   GQ++ I     G+Q+LNL I +E     L  T+
Sbjct: 80  DVFVSNPAVADAVLRTPRRIFVLGVEGGQSDAIFFDAQGRQILNLSIRVEAATDELTDTV 139

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
            R    S + V+ ++  VVL G+ +    + +   L+ +++++           + V+NL
Sbjct: 140 HRLFPTSKVEVQSLNGRVVLSGLAQNNAQADQIARLAASYVTK----------PEDVINL 189

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA--ADFGGKFVSEGGDF 245
           ++IAG+DQVTLKV + EV+R  +KQ+G    I  ++   S S+     +G    S GG  
Sbjct: 190 MSIAGKDQVTLKVRVIEVQRSAIKQLGLSSDIVYNNGSQSYSYGRGNTYGTNGTSYGGRG 249

Query: 246 ----------------------------------------------SVKGVLDRFSFETV 259
                                                         +    L   S  T 
Sbjct: 250 LCYGQNNVVTNNFTDSNSVTDQTAVTLEDTPVVNRTLTATIGSAVNTTWRTLTGSSNATC 309

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A ER   IRTLAEP LTA+SG++A F +GG+          G  +V    +GV L FT
Sbjct: 310 LQAFERVGLIRTLAEPNLTAVSGEAAKFLAGGEFPVPVAEDDAGRITVEFKPFGVGLGFT 369

Query: 320 PTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           P VLS GRI ++I TEVSE           +   +P   VR+A+TTVE+ SGG++++AGL
Sbjct: 370 PVVLSEGRISMKISTEVSEITNVGAFTSNGSNLTIPGLSVRRAETTVEMQSGGSLMIAGL 429

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L+   +Q  + +P ++ +PILG+LFR+  F  E+TE+ +  TP++V PV    L  P D+
Sbjct: 430 LQSKYKQSIDSLPGMTSLPILGSLFRSRDFLNEDTELVVMVTPYIVDPVHPDQLQTPADN 489

Query: 434 YSVEDDAKAFFFNRVNKIY-GPKEASEVEGQNYKGAI----GFIYK 474
               DD    F  R+NK+  G   A+ V      G      G++ +
Sbjct: 490 LEFADDMSTVFMGRLNKVVDGDAVAAGVPASGPTGPYVAPIGYVIE 535


>gi|254182583|ref|ZP_04889177.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|184213118|gb|EDU10161.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
          Length = 690

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509

Query: 448 VNKIYGPKE 456
           +    G ++
Sbjct: 510 MEGRGGLRQ 518


>gi|260463894|ref|ZP_05812090.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259030269|gb|EEW31549.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 481

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 119/447 (26%), Positives = 210/447 (46%), Gaps = 20/447 (4%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           +  F   +++ +  +  ++        A+  ++ +S  +      I +   K   +    
Sbjct: 12  RSCFVRALAMAVSLAAGAMLAFAGAARADNDIVYVSATKNA---SIKVAKGKPKTIITSA 68

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
               +++ DP  A+V   + ++ Y+ G N+G   + L     + +  +DI +  D   L 
Sbjct: 69  AFYQIVIGDPEIANVNPLTDKSFYVLGNNLGTTGIALFDDKKQLVGTVDIEVTLDTDELA 128

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
            T+R  + D+ I+V   +  VVL G       +++A +++  F           S +++V
Sbjct: 129 NTIRASVPDAKIKVGSANGRVVLSGEADDAVAAEKANKIATRF-----------SGNEEV 177

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +N +NI+   QV L V   E+ R   + +G ++S   +     +  + + G    +  G+
Sbjct: 178 INSVNISSSQQVQLNVRFVEINRQAGQDLGAKYSANFAYGFGGRDVSLEPGTVPAAGTGE 237

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
              + + +  S +  + ALE     R LAEP L A SG++ASF +GG+     VS   G 
Sbjct: 238 IIGRLLSNGVSIDIAIKALEERGLARRLAEPNLIARSGETASFLAGGEFPIP-VSEENGK 296

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTV 360
            SV+   YGV L F PTVL  G + L I  EVS      +       +P + VR+A T+V
Sbjct: 297 ISVSYKKYGVSLDFKPTVLKDGLVSLDIAPEVSSIDASASYNIGNISVPGFIVRRARTSV 356

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +L +G + ++AGLL+         IP L K+P+LGALF +  + R ET++ I  TP+LVK
Sbjct: 357 DLKNGQSFMIAGLLQSQNDITTSRIPGLGKMPVLGALFSSKSYQRRETDLVIIVTPYLVK 416

Query: 421 PVAM-RDLSRPDDHYSVEDDAKAFFFN 446
           PV   + ++ P +      +A  F  N
Sbjct: 417 PVDPSKKMAEPTNGTQPASNADYFLNN 443


>gi|260462607|ref|ZP_05810813.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259031513|gb|EEW32783.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 478

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 117/476 (24%), Positives = 214/476 (44%), Gaps = 32/476 (6%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
           +  M     S   ++       +A    I++S+  +    ++ + +++ + +QV  ++ D
Sbjct: 5   WLRMGAAALSCLGALLLTSLAADAADRFIDVSNPSV---HRVFLPMSQSVTIQVNANLGD 61

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           ++V D   AD    + RT+Y+ GK  G   V L   D + +  + I +  D++ +   +R
Sbjct: 62  IVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSTDKRSLGVIQIEVGVDVSDMAQAIR 121

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
           +    S I +  ++  V L G V+     +  +++++ +                ++N +
Sbjct: 122 QVSPRSRIEIGSINGKVRLGGHVKDGATLEAIMQVAQQY------------GPDAIINSV 169

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------ 242
            +    QV L+V + E +R+  + +G      GSS+    +  A         G      
Sbjct: 170 TVDDSQQVNLEVRVLEAKRNAGRDLGVSFRSRGSSATIFGTGIAATTPPGADPGTLVTGL 229

Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                       + +      + ++ ALE    +RTLA P LT +SG+ ASF +GGQ   
Sbjct: 230 LSKTNPFASLITQIIDSNIKVDLIIEALEAKGVVRTLANPNLTTLSGEPASFNAGGQVPI 289

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           ++V+   G   +    +GV L FTP VL+  +I + +  EVS+     +AGD P +  RK
Sbjct: 290 RSVT-KDGLIQIEYKQFGVNLQFTPIVLADDKIHISLAPEVSDLTGFTSAGD-PIFTNRK 347

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            DT VEL  G +  + GLL     +L+  +P L ++P++G LFRNS   +EETE+ +  T
Sbjct: 348 LDTVVELRDGQSFAVGGLLSSKTTKLQNQVPWLGQVPVIGTLFRNSSNQKEETELVVIVT 407

Query: 416 PFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
           P +V+PV     L+ P D     +D + F   ++ ++          G    G  G
Sbjct: 408 PHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQL-EVNKDMIRKYETGDGVTGPYG 462


>gi|126456485|ref|YP_001076989.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|242311194|ref|ZP_04810211.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|126230253|gb|ABN93666.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|242134433|gb|EES20836.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
          Length = 690

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509

Query: 448 VNKIYGPKE 456
           +    G ++
Sbjct: 510 MEGRGGLRQ 518


>gi|149911409|ref|ZP_01900027.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36]
 gi|149805517|gb|EDM65522.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36]
          Length = 489

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 115/416 (27%), Positives = 194/416 (46%), Gaps = 20/416 (4%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
            + I + K   LQ+   +  V V +   AD+++   R +Y+ GK +G  N+++   D   
Sbjct: 44  SVRIPIFKSKTLQMDKAIHRVSVGNSDIADILILRSRELYIVGKRLGTTNMMVWDKDDNL 103

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           +   ++ +  D+  L   L +++ + +I VE     +V+ G V ++     AVE++E + 
Sbjct: 104 VHVQNLEVTHDLNSLRKRLYKYLPNEDIGVETSQGQLVVSGQVSSLVKMNTAVEIAEGYA 163

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
           + +   +    S+  V+N++++ G  QV L+VT+AEV  DI + +     +    S    
Sbjct: 164 TAANVGK----SNSIVVNMMSVGGGQQVMLEVTVAEVSTDIGRNLDGNTVLGAFGSDGFA 219

Query: 229 SFAADFGGKFVSEGGDFSVK----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                 G    +  G          +     F       +     + LAEP LTA+SGQS
Sbjct: 220 GIGTGTGNVPTNILGSIDTNIFARYLTGDMLFSVAFDVAKSKGLTKILAEPNLTALSGQS 279

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340
           A F SGG++      S+    ++   D+GV + F PTVL  G+I L ++  VSE      
Sbjct: 280 AEFLSGGEYPVPV--STDDGITIEYRDFGVGVSFVPTVLDSGKINLNLKVLVSELSSVNS 337

Query: 341 IGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           + ++A D       PS   R   TTVEL  G TIV+ GLL D +++     P L  IPIL
Sbjct: 338 VTISASDTNTSTITPSLIKRSTATTVELGDGQTIVIGGLLSDSLRESITKFPGLGDIPIL 397

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           G LF +  +   +TE+ I  TP LV+P     +  P D +    D + +   ++ +
Sbjct: 398 GQLFTSQEYISGQTELVIMVTPRLVRPFNKDGMILPTDGFVPVSDMEFYLLGKMTQ 453


>gi|134281876|ref|ZP_01768583.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|134246938|gb|EBA47025.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
          Length = 685

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 123/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K ++L +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANMGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509

Query: 448 VNKIYGPKE 456
           +    G ++
Sbjct: 510 MEGRGGLRQ 518


>gi|76819084|ref|YP_336469.1| phospholipid-binding domain-containing protein [Burkholderia
           pseudomallei 1710b]
 gi|254264517|ref|ZP_04955382.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
 gi|76583557|gb|ABA53031.1| Putative phospholipid-binding domain family [Burkholderia
           pseudomallei 1710b]
 gi|254215519|gb|EET04904.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
          Length = 690

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509

Query: 448 VNKIYGPKE 456
           +    G ++
Sbjct: 510 MEGRGGLRQ 518


>gi|167829715|ref|ZP_02461186.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 9]
          Length = 510

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 73  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 132

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 133 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 191

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 192 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 247

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 248 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 307

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 308 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 367

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 368 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 427

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 428 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 487

Query: 448 VNKIYGPKE 456
           +    G ++
Sbjct: 488 MEGRGGLRQ 496


>gi|254192422|ref|ZP_04898861.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|169649180|gb|EDS81873.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
          Length = 690

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509

Query: 448 VNKIYGPKE 456
           +    G ++
Sbjct: 510 MEGRGGLRQ 518


>gi|187927687|ref|YP_001898174.1| type II and III secretion system protein [Ralstonia pickettii 12J]
 gi|187724577|gb|ACD25742.1| type II and III secretion system protein [Ralstonia pickettii 12J]
          Length = 663

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 123/461 (26%), Positives = 225/461 (48%), Gaps = 35/461 (7%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
              S NP++A  P    A+    N +    G+   + + + K  ++ +P  V++  + +P
Sbjct: 75  MTISMNPALATAP---VADVRGPNCTGAVRGES-SVVVPVGKSSLISLPEPVRNRTLGNP 130

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 + SP++MYL G++VG  N+I+ G  G   + +++++  D   L+ +L + +   
Sbjct: 131 AVVQATMVSPQSMYLLGRSVGTTNMIVQGRSGACSI-VNVVVNADAGGLQTSLAQLMPGE 189

Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG------------RNQYANSSS 181
           N IRV   +D++VL G V + Q +Q+A+E++  + + +                   +  
Sbjct: 190 NKIRVMTAADSLVLAGNVSSAQAAQQAMEIAHAYAASAQSGADKGGGAAGALGGGGAAGG 249

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
             V+N++ +    QV L+V +AEV + +L Q+G   ++     G   S++       ++ 
Sbjct: 250 ANVINMMIVDTPQQVMLEVKVAEVSKTLLNQLGSALNVQ----GGFGSWSGGLLTSLLTG 305

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                     +   F+  L A +  + ++ LAEP L  +SGQ ASF +GG+       SS
Sbjct: 306 SSTGFFANKANNRPFQVELDAQKNDSLVKILAEPNLVTLSGQEASFLAGGKIYIPVAQSS 365

Query: 302 TG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGD---M 348
           +       ++   +YGV L FTPTV++ GRI L++  EVSE       V G N      +
Sbjct: 366 SSGGAPTITLQEEEYGVGLKFTPTVMANGRINLKVAPEVSELSPTGATVTGANTNGQTIL 425

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P    R+A TTV++  G +  + GLL+D+ +   + +P   +IP+LG LFR+++F  + T
Sbjct: 426 PLITTRRASTTVQMRDGESFAIGGLLQDNARGSLKALPGAGEIPVLGTLFRSTQFQHDLT 485

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           E+ I  TP LV+P+       P D +S  ++   +    + 
Sbjct: 486 ELVIVITPRLVQPMQTASYPLPTDSFSTPNELAVYLTGNME 526


>gi|82703477|ref|YP_413043.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
 gi|82411542|gb|ABB75651.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
          Length = 574

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 132/487 (27%), Positives = 218/487 (44%), Gaps = 49/487 (10%)

Query: 8   FFTMMSIFL-FSSNPSVAKLPPIKEANAAVINISDVEIG------KGKKISIGLNKVIIL 60
              ++ I L  S   S A      +A    +  +    G          + +   K  +L
Sbjct: 41  ITVLLGITLGLSGELSAANQTAAGQAMGRPMVAAAKPAGPVEGLLAASDMDVTYGKSALL 100

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDILI 116
           ++P  V  + V +P  ADV + SP  +Y+ GK++G  NVIL    G     Q   +++ +
Sbjct: 101 RLPAPVTRISVGNPDVADVTLISPGEIYVLGKSIGTTNVILWTRGGLAGSSQTAVINVTV 160

Query: 117 ERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ----- 170
             D A L+  LR  +    +I+V    D++VL G V     + RAV L++ ++       
Sbjct: 161 ILDAAALQAKLRELMPGETDIKVTAAGDSLVLSGTVSDTLKADRAVALADAYVRAAAGGQ 220

Query: 171 --------------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
                                 +       S +V+NLL +    QV L+V +AE+ R + 
Sbjct: 221 GGQRGGKQGGDASGGQGGGDEPKGAGQGLGSVQVVNLLQVGSNQQVMLEVKVAEINRKVA 280

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
           +++GF        +G   ++     G      G               ++ A ++     
Sbjct: 281 ERLGFDFQRAARKAG--SAWTQIMTGIIGGAPGMLFQSRGTPEIGDAFLIDAEKKDELFH 338

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP + AISGQ ASF  GG+ +   +    G  ++ +  +GV L FTPTVL  GRI L
Sbjct: 339 ILAEPNIVAISGQEASFLVGGEVMIP-IPQYAGVITLQSRQFGVGLRFTPTVLEEGRINL 397

Query: 331 RIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            +  EV+E V               +P++  R+  TTV+L  G ++ + GLL+D+I++  
Sbjct: 398 VVSPEVTELVKFDTIATTGLGGVLAVPTFTTRRVSTTVQLRDGQSLAIGGLLQDNIKETI 457

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           +  P+L +IPILGALFR+S F +++TE+ +  TP L+KP+   D + P D +   D    
Sbjct: 458 KRFPVLGEIPILGALFRSSDFQKDKTELMVVVTPRLIKPLQP-DYALPTDAFVQPDRPDF 516

Query: 443 FFFNRVN 449
            F  R+ 
Sbjct: 517 LFDGRME 523


>gi|217424167|ref|ZP_03455666.1| outer membrane protein [Burkholderia pseudomallei 576]
 gi|217392632|gb|EEC32655.1| outer membrane protein [Burkholderia pseudomallei 576]
          Length = 673

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 214 AIAKAYSNRTNAGAAGSGVGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509

Query: 448 VNKIYGPKE 456
           +    G ++
Sbjct: 510 MEGRGGLRQ 518


>gi|126445563|ref|YP_001064076.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|126225054|gb|ABN88559.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
          Length = 690

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 122/433 (28%), Positives = 218/433 (50%), Gaps = 24/433 (5%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSK------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
            +++ + +++      +           V+N+L +    QV L+V +AEV + ++ Q+  
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGNGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM-- 271

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                 +  G   S+        ++  G        ++      + A      ++ LAEP
Sbjct: 272 --GSAVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEP 329

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            L  ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++
Sbjct: 330 RLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKV 389

Query: 333 QTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             EVSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   +
Sbjct: 390 APEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLK 449

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +P + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +
Sbjct: 450 ALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 509

Query: 444 FFNRVNKIYGPKE 456
               +    G ++
Sbjct: 510 ATGNMEGRGGLRQ 522


>gi|53723207|ref|YP_112192.1| outer membrane protein [Burkholderia pseudomallei K96243]
 gi|52213621|emb|CAH39675.1| putative outer membrane protein [Burkholderia pseudomallei K96243]
          Length = 690

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509

Query: 448 VNKIYGPKE 456
           +    G ++
Sbjct: 510 MEGRGGLRQ 518


>gi|91788411|ref|YP_549363.1| type II and III secretion system protein [Polaromonas sp. JS666]
 gi|91697636|gb|ABE44465.1| type II and III secretion system protein [Polaromonas sp. JS666]
          Length = 514

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 134/488 (27%), Positives = 231/488 (47%), Gaps = 42/488 (8%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGK--------GKKISIGLNKVIILQVPVDVQ 67
           L + NP  A   P K+A  A       +             +I++   K  ++++P    
Sbjct: 40  LAAKNPPTATSGPGKQAATAQPKAVVTQARAPITGKVELAPQINLSEGKSTLMRLPSPAT 99

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            + V D    DV++ +P  +Y+ GK+VG  N+IL        + +DI +  D   L   L
Sbjct: 100 RLSVGDARIVDVILLNPSELYMLGKSVGSTNLILWNKANDATI-IDIAVGMDTVALRSRL 158

Query: 128 RRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS------ 180
            +  A   ++++   +DT++L GMV  +  + + + ++  ++ +S R+  A  +      
Sbjct: 159 EQMFASEKDLKITTAADTLILSGMVSDVVKADQILSVANAYVQRSSRSGQAGGASGGSAG 218

Query: 181 -----SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
                S KV+N+L+IA   QV L+V +AEV + +  Q+G       ++   + +  ++  
Sbjct: 219 GQQSDSAKVVNMLSIAAPQQVMLEVQVAEVSKTLADQLGASIGGRKTTGSWTYTLLSNLL 278

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                 G   S+  V +  +F   + A +    ++ LAEPT+ AISGQ ASF +GG+   
Sbjct: 279 -----TGAASSIGAVKNSGNF-LTIDAQKGDGLLKILAEPTIMAISGQEASFLAGGKIFI 332

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAG 346
              S + G  ++   ++GV + F PTVL  GRI L++  EVS+                 
Sbjct: 333 PVKSGNNGEIALEEKEFGVSVKFLPTVLEGGRINLKVAPEVSDLNRQGVGISATGSSTTA 392

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +PS+  R+A TTV+L  G +  + GL+K+++       PLL ++P+LGALFR+S F  +
Sbjct: 393 ILPSFTTRRASTTVQLFDGQSFAIGGLIKNNVTANINAFPLLGEVPVLGALFRSSDFQTD 452

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            +E+    TP LVKP+   D   P D Y     ++ F   ++     P E ++  G    
Sbjct: 453 RSELVFIVTPHLVKPL-PADYKLPTDPYIQPSRSEFFLGGKMEGA-APPEGNKPAGP--- 507

Query: 467 GAIGFIYK 474
            A GF  K
Sbjct: 508 -ATGFEVK 514


>gi|167836689|ref|ZP_02463572.1| RhcC2 [Burkholderia thailandensis MSMB43]
          Length = 460

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 123/440 (27%), Positives = 217/440 (49%), Gaps = 27/440 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +++      +L++P     V ++DP  ADV V +P+++++ GK  G   +  +G + 
Sbjct: 35  GPVLTVAAGGGEMLKLPEPAGAVFIADPDVADVHVPTPQSVFVLGKKAGTTTLFALGSNN 94

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +L   I++  D   L+  L     + ++ +     ++++ G V +  D+   V+  + 
Sbjct: 95  RTILRETIVVNADTPTLQRILDARFPNLHLTLTSAPGSLMVAGHVPSPSDADAVVQTLKP 154

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +L +           + ++N + +A   QV L+V + E+ R+I +Q+G   S  G+S   
Sbjct: 155 YLHEK----------ETLVNRMTLARPIQVHLRVRVTEIDRNITQQLGINWSAIGASGNF 204

Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277
                     F        +S  G FSV G     R+S + VL AL++   I  LAEP L
Sbjct: 205 VGGLFNGRTLFDPTSRLFNLSPTGAFSVLGGFHTSRYSVDGVLDALDQEGLITMLAEPNL 264

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           T +SG++ASF +GG+        +TGA ++    +GV L FTPTVL+  RI L+++ EVS
Sbjct: 265 TTMSGETASFLAGGEFPIPVSQDTTGAITIEFKPFGVSLDFTPTVLADNRISLKVRPEVS 324

Query: 338 EP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           E      +  N   +P+  VR+ +TTVEL SG +  + GLL+     +   +P L+++P+
Sbjct: 325 EIDPVNSVTSNGIRVPALTVRRVETTVELSSGQSFAIGGLLQSKTSDVLAELPGLARLPV 384

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG LF +  +  ++TE+ +  TP++V+PV   +L    D  +       +   R   I  
Sbjct: 385 LGKLFSSKNYLNDKTEVVVIVTPYVVQPVGPGELRDALDSVTQPSSDIEYVLQRAIGI-- 442

Query: 454 PKEASEVEGQNYKGAIGFIY 473
             +    +     GA GFIY
Sbjct: 443 --DPLSGDLPRLVGAAGFIY 460


>gi|94497254|ref|ZP_01303826.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
 gi|94423359|gb|EAT08388.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
          Length = 486

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 137/455 (30%), Positives = 219/455 (48%), Gaps = 39/455 (8%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           +    +           P    NAA  ++ D        I + +    ++ +P  + DV+
Sbjct: 4   LAGPAIAIGLAVACAAVPTSALNAATSSMQDNA------ILLSVGGSRVINLPAKMSDVV 57

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           ++DP   DV V S   +YL  K  G+  V     +GK + +  + +  +I  ++  LR  
Sbjct: 58  IADPEVVDVHVRSQNQLYLIAKKAGETTVFATAPNGKVLFSGTVRVGNNITSIDDMLRIA 117

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           +  +NI V  ++  V+L G ++  +D+     L++ F+ +             V++ L +
Sbjct: 118 MPGANIAVNTMNGMVLLTGTIQAPEDAAEVERLTQAFVGKDVT----------VVSRLRM 167

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------ 238
           A   QV L+V IAEV +D+  +IG   +    S G     A + GG              
Sbjct: 168 ATPLQVMLQVKIAEVAKDVGHKIGTNFASVDRSGG---KVAGNVGGGLRDFAQYNADTNS 224

Query: 239 ----VSEGGDFSVKGV--LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                   G +S+ GV  +        L   E +    TLA+P LTA+SG++ASF +GG+
Sbjct: 225 WDFTNPIDGGYSLGGVARILGMDIAGALDLAESSGLASTLAQPNLTALSGETASFLAGGE 284

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
           + Y TVS+     S+    YGV L FTPTVL+ GRI LR++  VS     +NA  +P+ +
Sbjct: 285 YPY-TVSNGLQGNSIEFKQYGVQLAFTPTVLADGRISLRVRPTVSSLDFSINAN-VPALK 342

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A+TTVEL SG   ++AGLL ++       +P L  +PILG+LF++ +F R ETE+ I
Sbjct: 343 SRTAETTVELGSGQAFMIAGLLNNEASNNVNKVPGLGNLPILGSLFKSRQFQRNETELVI 402

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
             TP+LVKP+   D+  P D +   D  +  F  R
Sbjct: 403 VVTPYLVKPMNASDVRLPTDGFRNADLGEGLFLQR 437


>gi|134291857|ref|YP_001115626.1| type II and III secretion system protein [Burkholderia
           vietnamiensis G4]
 gi|134135046|gb|ABO59371.1| type II and III secretion system protein [Burkholderia
           vietnamiensis G4]
          Length = 647

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 124/433 (28%), Positives = 214/433 (49%), Gaps = 18/433 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            +     +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+ 
Sbjct: 93  AVRDSTSVSVPLGKSLLVPMPEAVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQ 152

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G     +D+ +  D   L+ +L + +  + +I V   + T+VL G V   Q +Q+AV
Sbjct: 153 GKSGAC-RVIDVAVGADAGGLQASLLQLMPAERDIHVSTAAGTIVLAGTVSNSQAAQQAV 211

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +++  +   +G  +   +    V+N+L++    QV L+V +AEV + ++ Q+G   +I G
Sbjct: 212 QIARAYSDSAGGGEGGTAKGGGVLNMLSVTSPQQVMLEVKVAEVSKTLINQMGSALNIQG 271

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                S +  ++      S      V    +   F     A      ++ LAEP L  IS
Sbjct: 272 GFGSWSGALVSNLLAGVASAA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTIS 327

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           GQ A+F +GG+       SS    S  T    ++GV L FTPTVL+ GRI L++  EVSE
Sbjct: 328 GQEATFLAGGKIFIPVPQSSGTGVSTITLQQEEFGVALKFTPTVLANGRISLKVAPEVSE 387

Query: 339 PVIG------VNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                      N G    +P    R+A TTV++  G +  + GL+KD+     + IP + 
Sbjct: 388 LSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGVG 447

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           ++P+LGALFR++ F ++ TE+    TP LVKP+   D   P D +S  ++A  +    + 
Sbjct: 448 EVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQSADQPMPTDSFSKPNEADVYATGNME 507

Query: 450 KIYGPKEASEVEG 462
             +G +  +    
Sbjct: 508 GRHGVRRPAAQPA 520


>gi|260778162|ref|ZP_05887055.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606175|gb|EEX32460.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
          Length = 469

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 112/451 (24%), Positives = 209/451 (46%), Gaps = 35/451 (7%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + +N+  ++++    + + +S+   AD    +   + +FG   G A + ++    + +
Sbjct: 27  LEVNINEAKMIRLSEKAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITVLNEQERVI 86

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            +  I +  D   L+  ++    D+++  E +   + L G V T   +   V +++ +LS
Sbjct: 87  YSNKIRVVHDTQELDELIKAQFPDASVNSESLGGKLWLKGSVPTPVMAHSIVNVAKGYLS 146

Query: 170 QSGRNQYANSS--------------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
                Q +N++                      +++N L +    QV +++ IAEV R++
Sbjct: 147 PIVAPQESNNNDSSKSSNSSESNSENQQNSNGDELINQLVVTMPTQVNIRIRIAEVSRNV 206

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
             ++G +    GS      +     G    ++  D S  G   + +   ++ AL     +
Sbjct: 207 SNKLGIKW---GSLVTNGSTVENTVGSFLYNKPWDVSSWG---KPNLSALVDALASTGDM 260

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             LAEP LTA+SG+ A+F  GG+     +   T   +V    +GV L+F P VL P RI 
Sbjct: 261 SILAEPNLTAMSGEEANFLVGGEVPIPLIQGDT--ATVEYKPFGVNLNFKPVVLGPDRIS 318

Query: 330 LRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L+++ EVS   +     +N   +PS+  R+A TT+EL SG +  L GLL+    +  + +
Sbjct: 319 LKVEPEVSSVSVDNQAVLNGNVLPSFTSRRASTTIELASGQSFALGGLLQSSEIEQLQKL 378

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF- 444
           P +  IPILG LFR++ + R ETE+ I AT +LV+P    +L  P D    + D +    
Sbjct: 379 PGMGDIPILGGLFRSNEYQRRETELIIIATAYLVEPTRSDNLPIPTDALIPQSDLERLLA 438

Query: 445 FNRVNKIYGPKEASEVEGQNYK--GAIGFIY 473
               + +    +A+  + +  +  G  GF Y
Sbjct: 439 LPDEDFVGTSGKATYTDNRKPRLLGDNGFYY 469


>gi|167821374|ref|ZP_02453054.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 91]
          Length = 494

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 122/435 (28%), Positives = 218/435 (50%), Gaps = 20/435 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 64  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 123

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 124 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 182

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 183 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 238

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 239 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 298

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 299 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 358

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 359 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 418

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 419 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 478

Query: 448 VNKIYGPKEASEVEG 462
           +    G ++      
Sbjct: 479 MEGRGGLRQHGAAPA 493


>gi|332188377|ref|ZP_08390102.1| bacterial type II and III secretion system family protein
           [Sphingomonas sp. S17]
 gi|332011606|gb|EGI53686.1| bacterial type II and III secretion system family protein
           [Sphingomonas sp. S17]
          Length = 511

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 131/453 (28%), Positives = 214/453 (47%), Gaps = 42/453 (9%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
              + I   +  ++ +P  + D+ V+D T ADV V SP  +Y+FGK  G+  +      G
Sbjct: 49  AGVLEINTGRARLITLPRPMTDLFVADDTIADVQVRSPTQLYIFGKKPGETTISATARGG 108

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
             +    + I  ++  +   LR  + ++ I    ++  ++L G V    D   A  L + 
Sbjct: 109 AVVYATTVRIGNNLDSIGRMLRLAMPEAQIASTPMNGLILLTGTVAAPDDVAEAERLVQA 168

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------- 217
           ++ +            KV++ L  A   QV L+V IAEV R+ +K IG            
Sbjct: 169 YVGKDT----------KVISRLKTATPLQVNLQVRIAEVNRNFVKSIGVNLLNRDRNSSG 218

Query: 218 ------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
                       +IT  ++    +    +G           + G +        +   E 
Sbjct: 219 FVFGIGSGRNPGTITDLTNAAGTTIGTQYGFNQGPLRTTLGLGGRVLGMDLLGAMDLGET 278

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              + TLA P LTA+SG++A+F +GG+     +S+  GA SV    YGV L +TPTVLS 
Sbjct: 279 LGQVSTLANPNLTALSGETATFLAGGEIPIP-LSTGLGAVSVEYKQYGVSLSYTPTVLSD 337

Query: 326 GRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           GRI LR++ EVS+      + ++   +P+   R+A+TT+EL SG ++++ GLL +     
Sbjct: 338 GRISLRVRPEVSQITSVGAVTISGTTIPALTTRRAETTLELGSGQSMMIGGLLSNSRDNS 397

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDA 440
            E  P L  +P++GALFR++ F R ETE+ I  TP+LVKPV +  D++ P D     +DA
Sbjct: 398 IEKTPWLGDLPLIGALFRSNAFKRNETELVIIITPYLVKPVNSPSDIALPTDGQRSPNDA 457

Query: 441 KAFFFNRVNKIYG-----PKEASEVEGQNYKGA 468
           +     R+          P  A+ V+G+   GA
Sbjct: 458 ERVLLGRMAAGSSEPRPVPTMATPVQGRPVTGA 490


>gi|220918104|ref|YP_002493408.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955958|gb|ACL66342.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 477

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 132/491 (26%), Positives = 225/491 (45%), Gaps = 44/491 (8%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDV 69
           M++  L +       LPP++ A  A+  +  D  +G G ++++   +  +L +  ++  V
Sbjct: 1   MIAHTLLALALFATPLPPVELAAGALPPLRIDRSVGAGSELALEAGQNRLLIISEEIGRV 60

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
            V+DP+ AD+ V +   + L  K+ G  ++ L      + L + +++ R++  L   ++ 
Sbjct: 61  AVADPSVADLKVVTTNQLLLTAKSSGTTDLTLWNRSN-EPLVIALVVTRNLEPLRKQVKD 119

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
                 + +    + V+L G V  ++  +R VE+++                K+V NL+ 
Sbjct: 120 LFPGEKVTITGAGELVILSGEVSDVRIPERLVEVAKLHA-------------KQVANLVK 166

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------DFGGKFVSEGG 243
           ++G  QV L+V  AEV R  L+QIG       S+               D G       G
Sbjct: 167 VSGNQQVQLEVRFAEVSRSGLRQIGVNLFHQSSNGEVVTGMTGRGIIPTDLGVPGTGTAG 226

Query: 244 --------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                            V  +   F F  +L  LE+    +TLAEPTL  +SGQ A F +
Sbjct: 227 APPPIFRPQFNNGFSMFVSSLSGDFPFSAMLSLLEQNGLSKTLAEPTLVTLSGQQARFVA 286

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345
           GG+     +  S G T V    +G++L FTPTV++   I L ++ EVS+      I +  
Sbjct: 287 GGELPIP-LGGSFGQTQVEWKKFGILLDFTPTVIAGDTIHLDLKAEVSDIDQSLAITIGG 345

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P    R+++TT+ L  G +  +AGLL D ++   E +PLL  IPILGALFR++++ R
Sbjct: 346 TTIPGLTSRQSETTIRLGDGQSFAIAGLLSDRVRSQIERVPLLGSIPILGALFRSTQYKR 405

Query: 406 EETEIFIAATPFLVKPVAMRDL-SRPDDH-YSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
           EE+E+ +  T  L +PVA   L   P +   +   D + F     +       ++    Q
Sbjct: 406 EESELLVVVTARLARPVAPHQLPPLPTERELNHPGDIELFLLGWDDGGKQVPRSAPSTRQ 465

Query: 464 N--YKGAIGFI 472
                GA GF+
Sbjct: 466 AGGPSGARGFV 476


>gi|27376953|ref|NP_768482.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110]
 gi|27350095|dbj|BAC47107.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110]
          Length = 430

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 121/435 (27%), Positives = 200/435 (45%), Gaps = 17/435 (3%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
                ++I  ++   + +      + V+DP  AD    S  T+++FGK  G+ ++  +  
Sbjct: 8   STTGTLNITSSQGKTVHLSAPAATIFVADPAIADYQAPSSSTIFVFGKKSGRTSLFALNE 67

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           +G+ +  L I++ + +  L   L+  + D  I+V       +L G+       + A +++
Sbjct: 68  NGEALAELRIVVTQPLEDLRAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVEAARKVT 127

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           E F+               V+N + +AG  QV L V +AEV R  +K +    + +G + 
Sbjct: 128 EQFVGAGAP----------VVNKIQVAGSLQVNLSVRVAEVSRTAVKDLNINFTASGPN- 176

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G   +     G      GG   +       +   VL AL        LAEP LTA+SG++
Sbjct: 177 GAFLATGKPGGSGRAGGGGTIGIGFSTGNINLSAVLDALASEHLASILAEPNLTAMSGEA 236

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---- 340
           ASF +GG+     +       SV    +GV L F PTVLS  +I +R++ EVSE      
Sbjct: 237 ASFLAGGEFPIPVM-QDNRQVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSELSTEGE 295

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           + +N   +P+   R+A T VEL SG +  + GL++ +        P L  +PILGALFR+
Sbjct: 296 VKINGMAVPALSTRRASTVVELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPILGALFRS 355

Query: 401 SRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           S F + ETE+ I  TP++V+P      +S P +  +   DA     N V +    ++A  
Sbjct: 356 SSFQKRETELVIVVTPYIVRPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQGRDAPR 415

Query: 460 VEGQNYKGAIGFIYK 474
                  G  GFI +
Sbjct: 416 ASAPGLTGNAGFIIE 430


>gi|254293214|ref|YP_003059237.1| type II and III secretion system protein [Hirschia baltica ATCC
           49814]
 gi|254041745|gb|ACT58540.1| type II and III secretion system protein [Hirschia baltica ATCC
           49814]
          Length = 535

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 158/538 (29%), Positives = 262/538 (48%), Gaps = 80/538 (14%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG---KGKKISIGLNKVIIL 60
           +++   +     +   + S      +    +  I +   E G     + +++  NK  +L
Sbjct: 9   IKKILLSACVAAIGFGSESAFAQNSLAGGVSETIRVRVTEPGQSATSRTLNLSQNKTAVL 68

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI-ERD 119
           +   DV D+LV++P  ADV+  S R + +  K  G++++I     GK++L+LD+++  + 
Sbjct: 69  EFEEDVDDILVANPEIADVLARSKRRIAVLAKGKGESSIIFTNAQGKEILSLDVIVAGQG 128

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           ++ L+  + +++  S I+ E V+  +VL G   ++ D+  A++L++ F+           
Sbjct: 129 VSELQALIEQYVPRSAIKAEFVNGAIVLAGKSPSLSDADMAIQLAQQFVVDDSP------ 182

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------------- 222
               V+N+++I G+DQV LKV I E++R ++KQ+G   S + +                 
Sbjct: 183 ----VINMISIEGKDQVLLKVRIVEMQRSVIKQLGVNLSGSMNIGELANKSVQTAYDAVT 238

Query: 223 -------------------------SSGPSKSFAAD---FGGKFVSEGGDFSVKGVLDRF 254
                                    S G S S        GG  +S   +  V   L   
Sbjct: 239 GEVLLDAAGEALQVLAPAAPWDQSVSFGTSNSLGISGESLGGMSLSPSYNNYVGDKLQS- 297

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           S    +  LER   +RTLAEP LTA+SG+SA F +GG+    +   S G   +    +GV
Sbjct: 298 SAGFSVDMLERIGLVRTLAEPNLTALSGESAKFLAGGEFPVPSEVDSDGEVVLEFKPFGV 357

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE-------------------PVIGVNAGDMPSYRVRK 355
            L FTP VLS  RI +RI TEVSE                     +   A  +P+ +VR+
Sbjct: 358 GLGFTPVVLSESRISMRISTEVSELTSTGGYQIGGTTYVDGAGNTVSTPAVVIPALKVRR 417

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ADTTVE+PSGG++V+AGL+++   Q  + +P +  +P++G+LFR+  F   ETE+ +  T
Sbjct: 418 ADTTVEMPSGGSLVIAGLIQEQTSQAMDKVPGVGNLPVIGSLFRSREFQNNETELVVIVT 477

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           P+LV P   + L  PDD Y    DAKA FF ++N++Y  + A   E     GA GFI+
Sbjct: 478 PYLVDPTDPKKLRSPDDGYVAAKDAKAIFFGKMNEVYAVEGADVEETAGINGA-GFIF 534


>gi|295690798|ref|YP_003594491.1| type II and III secretion system protein [Caulobacter segnis ATCC
           21756]
 gi|295432701|gb|ADG11873.1| type II and III secretion system protein [Caulobacter segnis ATCC
           21756]
          Length = 564

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 152/522 (29%), Positives = 236/522 (45%), Gaps = 92/522 (17%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
           N  V  +          + +   K  I+++P DV+D+LV+ PT AD V+   R +Y+ G 
Sbjct: 55  NGQVARVVLTADQTAATLELAKGKSAIVELPADVRDLLVTSPTVADAVLRDRRRVYIVGL 114

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G  +       G+++L+L I + + +  L  TL R + D+ I V  + D+VVL G VR
Sbjct: 115 AEGVTDAAFFDDAGRRILSLSIKVSQPVDQLADTLSRVLPDAKIEVRPIRDSVVLSGTVR 174

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +   S  A  ++  ++              KV+N+L+IAG+DQV L+V I EVRR+++KQ
Sbjct: 175 SPAQSDAAARIAAQYVG----------GPDKVLNMLSIAGKDQVMLQVRIVEVRRNVIKQ 224

Query: 213 IGFQHSITGSSSG---------PSKSFAADFGGKFVS----------------------- 240
           +G   +      G         P+ S   +  G                           
Sbjct: 225 LGVDLNAVLGQLGQSQYSFGLSPTYSVNGNLLGGVTGGYKLDTTKQPTLQIPCGNGVGDA 284

Query: 241 ------------------------------EGGDFSVKGVLDRFSFETVLHALERATAIR 270
                                                 G       + ++ A ER   +R
Sbjct: 285 KCLAVVHGKVYHTGVIDPTTGREIVVGNGDTATISDTAGSTGVNQAKGMIQAFERVGLVR 344

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           TLAEP LTA+SG++  F  GG+    T S +TG  ++    YGV L +TP V+S GRI L
Sbjct: 345 TLAEPNLTAVSGEAGHFLVGGEFPVPTGSDATGKIAIEFKPYGVGLGYTPVVMSGGRISL 404

Query: 331 RIQTEVSEPVI-----------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           +I TEVSE                          +P   VR+A+TTVELPSGG+ ++AGL
Sbjct: 405 KISTEVSELSSLGAFTISNSTTSGNTTTTSAPLTVPGLSVRRAETTVELPSGGSFMIAGL 464

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L+   +Q  + +P ++ +PILG+LFR+  F   ETE+ I  TP++V P   RDL  P D 
Sbjct: 465 LQQTTKQAIDALPGMTNMPILGSLFRSRDFLNGETELVIIVTPYIVDPAKPRDLQTPADG 524

Query: 434 YSVEDDAKAFFFNRVNK-IYGPKEASEVEGQNYKGAIGFIYK 474
             +  D       R+N+ +  P  A+   G+ Y+G +G++ +
Sbjct: 525 LRMAGDMSTVLLGRLNQVVKAPPGAN--AGRAYQGPVGYVIE 564


>gi|254255254|ref|ZP_04948570.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa
           AUO158]
 gi|124900991|gb|EAY71741.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa
           AUO158]
          Length = 682

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 122/417 (29%), Positives = 211/417 (50%), Gaps = 19/417 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            +     +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+ 
Sbjct: 93  AVRDSTSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGMSVGTTNMIVQ 152

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G     +D+ +  D A L+ +L + + +   + V   + T+VL G V + Q +Q+AV
Sbjct: 153 GKSGAC-RVIDVAVGADAAGLQASLMQLMPNERDVHVSTAAGTIVLSGSVSSSQAAQQAV 211

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
            ++  +   S  +         V+N+L++    QV L+V +AEV + ++ Q+G   +I G
Sbjct: 212 AIARAY-GDSAGDGNGGGKPGSVLNMLSVTSPQQVMLEVKVAEVSKTLINQLGSAFNIQG 270

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                S +  ++      S      V    +   F   + A      ++ LAEP L  IS
Sbjct: 271 GFGSWSGALVSNLLAGVASGA----VFNKANNRPFSVAVDAQNTDNLVKILAEPNLVTIS 326

Query: 282 GQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           GQ A+F +GG+       SS   T+   +   ++GV L FTPTVL+ GRI L++  EVSE
Sbjct: 327 GQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVALKFTPTVLANGRISLKVAPEVSE 386

Query: 339 PVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                          A  +P    R+A TTV++  G T  + GL+KD+     + IP + 
Sbjct: 387 LSQTGVTLSATNVSGASILPLITTRRASTTVQMSDGETFAIGGLIKDNASGALKAIPGVG 446

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
           ++P+LGALFR++ F ++ TE+    TP LVKP++  D++ P D +S  ++A  +   
Sbjct: 447 EVPVLGALFRSTSFQQDRTELIFVITPHLVKPLSTADVALPTDSFSKPNEADVYATG 503


>gi|167744175|ref|ZP_02416949.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 14]
          Length = 439

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 122/437 (27%), Positives = 218/437 (49%), Gaps = 20/437 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 7   EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 66

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 67  GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 125

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 126 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 181

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 182 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 241

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 242 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 301

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 302 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 361

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 362 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 421

Query: 448 VNKIYGPKEASEVEGQN 464
           +    G ++        
Sbjct: 422 MEGRGGLRQHGAAPAAA 438


>gi|167841773|ref|ZP_02468457.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 484

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 127/435 (29%), Positives = 221/435 (50%), Gaps = 26/435 (5%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 16  EMRESTNVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 75

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 76  GKSGACQI-IDVAVGADADGLQTSLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 134

Query: 162 ELSETFLSQSGRNQYAN--------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            +++ +  ++      N        SS   V+N+L +    QV L+V +AEV + ++ Q+
Sbjct: 135 AIAKAYSDRTNAGAAGNGNGNGGGGSSRADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM 194

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
                   +  G   S+        ++  G   V    ++      + A +    ++ LA
Sbjct: 195 ----GSAVNIQGGFGSWTGALMTSLLTGVGSGIVASKSNKLPLSGAIDAQDTDQPVKILA 250

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           EP L  ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L
Sbjct: 251 EPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISL 310

Query: 331 RIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           ++  EVSE              N   +P    R+A TTV++  G T  + GL+KD+ Q  
Sbjct: 311 KVAPEVSELSPTGVTLSASNVGNVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGT 370

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
            + +P + ++P+LGALFR++ F ++ TE+    TP LVKP+   D+  P D ++  ++A 
Sbjct: 371 LKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLDTADVPLPTDSFTKPNEAD 430

Query: 442 AFFFNRVNKIYGPKE 456
            +    +    G ++
Sbjct: 431 VYATGNMEGRGGLRQ 445


>gi|254418362|ref|ZP_05032086.1| Putative phospholipid-binding domain family [Brevundimonas sp.
           BAL3]
 gi|196184539|gb|EDX79515.1| Putative phospholipid-binding domain family [Brevundimonas sp.
           BAL3]
          Length = 517

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 138/511 (27%), Positives = 247/511 (48%), Gaps = 69/511 (13%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
           +A L     A  A    +       + I++       + +P D +DV+V++P  A+ ++H
Sbjct: 17  LAGLGAAPVAGLAQTRAAVSMGAAPQLINLPRGTSFAVDLPADARDVIVANPQVAEAMLH 76

Query: 83  SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
           SPR + + G   G+ + + +   G+ +L+L + ++   + L+ TL R +  S IR E V+
Sbjct: 77  SPRRITVIGIAPGETDAVFLDAAGRTILSLRVRVDAGTSALQDTLSRLVPGSQIRAEAVN 136

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
           D+V+L G+  +   + +A +++  F+          S+ +KV+N+++IAG DQVTLKV +
Sbjct: 137 DSVILSGVADSPAQAVQAAQVARAFV----------SAPEKVLNMISIAGSDQVTLKVRV 186

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-------------- 248
            EV+R  +KQ+GF  S      G ++    +     V+ G    +               
Sbjct: 187 VEVQRSAIKQLGFDTSAVVGQLGSTQWLLGNSATWGVNGGLIGGISAGLSRDTTKNYQMQ 246

Query: 249 ------------------------------------GVLDRFSFETVLHALERATAIRTL 272
                                               G  D       + A ER   +RTL
Sbjct: 247 RPCVGPGWTPGALCPVTVRGPDDASNWDTAQPGTGPGSNDLNKGSATVKAFERVGLLRTL 306

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           AEP LT+++G++ASF +GG+    +     G  +V    YGV L F P VL  GRI L++
Sbjct: 307 AEPNLTSVNGEAASFLAGGEFPIPSGRDRDGNITVVYKPYGVALSFRPVVLDAGRISLQV 366

Query: 333 QTEVSEPVI---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           + EVSE              ++  +P   VR+++ TVEL SGG++++AGLL+++ +Q  +
Sbjct: 367 KVEVSELTSQGGLTIGAGTTSSVSLPGLSVRRSENTVELSSGGSMMIAGLLQENTRQAID 426

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +P ++ +P+LG LFR+  +   ETE+ +   P++V P +   +  P D   +  D++  
Sbjct: 427 ALPGMTNLPVLGQLFRSRDYLNGETELVVIVEPYIVSPTSPDRMQTPADGLRIASDSQTI 486

Query: 444 FFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            F ++N+IYG    +   G  ++GA G++ +
Sbjct: 487 LFGQLNQIYGSPSPTAQSGAVWQGAAGYVIE 517


>gi|167908129|ref|ZP_02495334.1| type II/III secretion system protein [Burkholderia pseudomallei
           NCTC 13177]
          Length = 460

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 123/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K ++L +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 20  EMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 79

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 80  GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 138

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 139 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 194

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 195 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 254

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 255 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 314

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 315 SELSPTGVTLSAANMGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 374

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 375 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 434

Query: 448 VNKIYGPKE 456
           +    G ++
Sbjct: 435 MEGRGGLRQ 443


>gi|294139870|ref|YP_003555848.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
 gi|293326339|dbj|BAJ01070.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
          Length = 442

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 127/428 (29%), Positives = 196/428 (45%), Gaps = 52/428 (12%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
            +++ LNK  ++Q+P   + + +S  T AD    +   + +FGK  G  ++ ++  D   
Sbjct: 2   TLAVTLNKAELVQLPKTAKSIFISSNTIADYQALTNTKIMVFGKRAGTTSLYVLDADENV 61

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +  + +  ++  L   +R    D+ +  E ++  + L G V T   +++ V LSE ++
Sbjct: 62  IYSASVKVSHNVTELNGLIRSEFPDALVSAESIAGKLFLKGRVPTPTMAEKIVRLSEGYV 121

Query: 169 SQ----SGRNQYANSSSK------------------------KVMNLLNIAGEDQVTLKV 200
           SQ     G+ Q   SS +                        +++N L I    QV L+V
Sbjct: 122 SQPQSSKGKQQGGKSSGQAKGSKQQGQNGGGQESQSGTGSKGELINQLEITMSTQVNLRV 181

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            IAEV R++  ++G +    G  +G                   F+    L       ++
Sbjct: 182 RIAEVSRNVSNKLGIKWGSQGFGTG------------------KFAFSDGLGFSKLSVMV 223

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            AL     I  LAEP LTAISG+ ASF  GG+     +   T   S+    +GV L F P
Sbjct: 224 DALATNGMITVLAEPNLTAISGEKASFLVGGEVPIPLIYGDT--VSIEYKPFGVRLDFKP 281

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNA----GDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TVLSP RI L+I+ EVS      N        P +  RKA TT+EL SG +  L GLL+ 
Sbjct: 282 TVLSPNRISLQIEPEVSTISQSTNVVMGDSSFPVFMTRKASTTIELASGQSFALGGLLQS 341

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
              +  + +P +  IPILGALFR++ F REETE+ I AT +LV+P     L  P D    
Sbjct: 342 TDIEQMQKMPWIGDIPILGALFRSNEFKREETELIIIATVYLVEPTRGDSLPLPTDGLIP 401

Query: 437 EDDAKAFF 444
             D +   
Sbjct: 402 MSDVERLL 409


>gi|83716099|ref|YP_440456.1| type II and III secretion system protein [Burkholderia
           thailandensis E264]
 gi|83649924|gb|ABC33988.1| Bacterial type II and III secretion system protein domain protein
           [Burkholderia thailandensis E264]
          Length = 679

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 127/430 (29%), Positives = 219/430 (50%), Gaps = 21/430 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            +G+   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  AMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
            +++ +  ++               V+N+L +    QV L+V +AEV + ++ Q+     
Sbjct: 214 AIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----G 269

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
              +  G   S+        ++  G+       ++      + A      ++ LAEP L 
Sbjct: 270 SAVNLQGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRLV 329

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   TS  T    ++GV L FTPTVLS GRI L++  E
Sbjct: 330 TISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAPE 389

Query: 336 VSEPVIG------VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE           N G +   P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 390 VSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKALP 449

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LVKP+A  D+  P D ++  ++A  +   
Sbjct: 450 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYATG 509

Query: 447 RVNKIYGPKE 456
            +    G ++
Sbjct: 510 NMEGRGGLRQ 519


>gi|167899813|ref|ZP_02487214.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 7894]
          Length = 473

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 37  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 96

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 97  GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 155

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 156 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 211

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 212 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 271

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 272 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 331

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 332 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 391

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 392 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 451

Query: 448 VNKIYGPKE 456
           +    G ++
Sbjct: 452 MEGRGGLRQ 460


>gi|167851182|ref|ZP_02476690.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei B7210]
          Length = 449

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 123/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K ++L +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 15  EMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 74

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 75  GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 133

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 134 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 189

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 190 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 249

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 250 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 309

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 310 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 369

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 370 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 429

Query: 448 VNKIYGPKE 456
           +    G ++
Sbjct: 430 MEGRGGLRQ 438


>gi|319783874|ref|YP_004143350.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169762|gb|ADV13300.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 482

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 122/410 (29%), Positives = 196/410 (47%), Gaps = 17/410 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V   K   I +   K   +        +++ DP  A+V   + ++ Y+ G N+G   + L
Sbjct: 47  VSSTKNASIKVAKGKPKTIITSAAFYQIVIGDPEIANVNPLTDKSFYVLGNNLGTTGIAL 106

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
                + +  +DI +  D   L  T+R  + D+ I+V   +  VVL G       +++A 
Sbjct: 107 FDEKKQLVGTVDIEVTLDTDQLASTIRASVPDARIKVGSANGRVVLSGEADDAVAAEKAN 166

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +++  F           S +++V+N +NI+   QV L V   E+ R   + +G +++   
Sbjct: 167 KIATRF-----------SGAEEVINSVNISSSQQVQLNVRFVEINRQAGQDLGAKYAANF 215

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           +     +  + D G    +  G+   + + +  S +  + ALE     R LAEP L A S
Sbjct: 216 AYGLGGRDVSIDPGTVPTAGTGEIIGRLLSNGVSIDIAIKALEERGLARRLAEPNLIARS 275

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ+ASF +GG+     VS   G  SV+   YGV L FTPTVL  G + L I  EVS    
Sbjct: 276 GQTASFLAGGEFPIP-VSEDNGKISVSYKKYGVSLDFTPTVLKDGLVSLDIAPEVSSIDA 334

Query: 342 GVNAG----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             +       +P + VR+A T+V+L +G + ++AGLL+         IP L K+P+LGAL
Sbjct: 335 SASYNIGTISVPGFIVRRARTSVDLKNGQSFMIAGLLQSQNDITTSRIPGLGKMPVLGAL 394

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFN 446
           F +  + R ET++ I  TP+LVKPV   + L  P D      +A  F  N
Sbjct: 395 FSSKSYQRRETDLVIIVTPYLVKPVDPSKKLVEPTDGTQPASNADYFLNN 444


>gi|294012433|ref|YP_003545893.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
 gi|292675763|dbj|BAI97281.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
          Length = 499

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 136/466 (29%), Positives = 224/466 (48%), Gaps = 32/466 (6%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           ++   +           P    NAA  ++ D        I + +    ++ +P  + DV+
Sbjct: 14  LLGPAIALGLAVAVAAAPTSALNAAPASMQDNA------ILLSVGGSKVINLPAKMSDVV 67

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           + DP   DV V S   +YL  K  G+  V     +GK + +  + +  ++  ++  L+  
Sbjct: 68  IGDPDVVDVHVRSQNQLYLIAKKAGETTVFATATNGKVLFSGTVRVGNNLTSIDDMLKLA 127

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           + +++I V  ++  V+L G +   +D+  A  L++ F+ +             V++ L  
Sbjct: 128 MPNADIAVNKMNGMVLLTGTIAAPEDAAEAERLTQAFVGKEVT----------VVSRLRT 177

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-----------SFAADFGGKFV 239
           A   QV L+V IAEV RD+  +IG        + G              +F +  GG F 
Sbjct: 178 ATPLQVNLQVKIAEVSRDVGHKIGMNWKSQDLTGGKWAGGIGGGTRDAITFNSGGGGTFN 237

Query: 240 -SEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
            +  G +S+ GV          VL   E +    TLA+P LT++SG++ASF +GG++ Y 
Sbjct: 238 FTADGGYSLGGVARVLGLDIGAVLDLAESSGLATTLAQPNLTSLSGETASFLAGGEYPY- 296

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           TVS+ T   S+    YGV L FTPTVL+ GRI LR++  VS     V++  +P+ R R A
Sbjct: 297 TVSNGTQGNSIEFKQYGVQLAFTPTVLADGRISLRVRPTVSSLDFSVDS-SVPALRSRTA 355

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +TTVEL SG   ++AGLL +D       +P +  +PILG+LF++  F R ETE+ I  TP
Sbjct: 356 ETTVELGSGQAFMIAGLLNNDTANSISKVPGIGNLPILGSLFKSRNFQRHETELVIVVTP 415

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           +LVKP+   D+  P D +   ++ +  F  + +       A     
Sbjct: 416 YLVKPMNASDVRLPTDGFRNANEGQGLFLQQGHDGISGAHAPMPSR 461


>gi|90406750|ref|ZP_01214943.1| RhcC2 protein [Psychromonas sp. CNPT3]
 gi|90312203|gb|EAS40295.1| RhcC2 protein [Psychromonas sp. CNPT3]
          Length = 459

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 123/457 (26%), Positives = 202/457 (44%), Gaps = 43/457 (9%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
            + K +++ L++  +L +P   + + ++    AD    +   + +FGK VG  ++ ++  
Sbjct: 18  AQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTKIMIFGKRVGSTSLYVLDA 77

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
               + +  + +  ++  L   ++    ++ +  E  +  + L G V T   +++ V L+
Sbjct: 78  RENVIYSATVKVNHNVQELNALIKHEFPNAQVHSESTAGKLFLKGQVSTPSIAEKIVRLA 137

Query: 165 ETFLS---------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           E ++S                     Q G +  +  ++++++N L I    QV L+V IA
Sbjct: 138 EGYVSSNGGKSESAGAATEGGAQDDQQGGESAQSTQNTQELINQLVITMPTQVNLRVRIA 197

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           EV R++  ++G +                   G      G  +    +       ++ AL
Sbjct: 198 EVSRNVSNKLGIKWGAQNI-------------GTISGTFGTKNWLPNVKFPDLSIMIDAL 244

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
                I  LAEP LTAISG+ ASF  GG+     V     + ++    +GV L F PTVL
Sbjct: 245 ASNGLISILAEPNLTAISGERASFLVGGEIPLPVVFGD--SANIIYKPFGVRLDFKPTVL 302

Query: 324 SPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           S  RI L+I+ EVS      N       +P +  RKA TT+EL SG +  + GLL+    
Sbjct: 303 SANRIRLQIEPEVSTIAPRTNVQIGGSSLPVFITRKASTTIELASGQSFAIGGLLQSKDI 362

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
           +  + IPLL  IPILGALFR+S F REETE+ I AT +LV+P      S P D      D
Sbjct: 363 EQLQKIPLLGDIPILGALFRSSEFQREETELIIIATVYLVQPTRSDKFSLPTDGLLPLSD 422

Query: 440 AKAFFF---NRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            +        +V        +S        G  GF Y
Sbjct: 423 IERLLAWPHKKVTPTTMGSFSSTPSQPRLLGDNGFYY 459


>gi|167725247|ref|ZP_02408483.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei DM98]
          Length = 448

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 15  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 74

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 75  GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 133

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 134 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 189

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 190 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 249

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 250 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 309

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 310 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 369

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 370 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 429

Query: 448 VNKIYGPKE 456
           +    G ++
Sbjct: 430 MEGRGGLRQ 438


>gi|167916476|ref|ZP_02503567.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 112]
          Length = 452

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 15  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 74

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 75  GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 133

Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 134 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 189

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 190 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 249

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EV
Sbjct: 250 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 309

Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P 
Sbjct: 310 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 369

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    
Sbjct: 370 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 429

Query: 448 VNKIYGPKE 456
           +    G ++
Sbjct: 430 MEGRGGLRQ 438


>gi|167617230|ref|ZP_02385861.1| Bacterial type II and III secretion system protein domain protein
           [Burkholderia thailandensis Bt4]
          Length = 468

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 127/430 (29%), Positives = 219/430 (50%), Gaps = 21/430 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            +G+   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 16  AMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 75

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 76  GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 134

Query: 162 ELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
            +++ +  ++               V+N+L +    QV L+V +AEV + ++ Q+     
Sbjct: 135 AIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----G 190

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
              +  G   S+        ++  G+       ++      + A      ++ LAEP L 
Sbjct: 191 SAVNLQGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRLV 250

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   TS  T    ++GV L FTPTVLS GRI L++  E
Sbjct: 251 TISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAPE 310

Query: 336 VSEPVIG------VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE           N G +   P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 311 VSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKALP 370

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LVKP+A  D+  P D ++  ++A  +   
Sbjct: 371 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYATG 430

Query: 447 RVNKIYGPKE 456
            +    G ++
Sbjct: 431 NMEGRGGLRQ 440


>gi|167579115|ref|ZP_02371989.1| Bacterial type II and III secretion system protein domain protein
           [Burkholderia thailandensis TXDOH]
          Length = 462

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 127/430 (29%), Positives = 219/430 (50%), Gaps = 21/430 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            +G+   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 16  AMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 75

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 76  GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 134

Query: 162 ELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
            +++ +  ++               V+N+L +    QV L+V +AEV + ++ Q+     
Sbjct: 135 AIAKAYSDRTNAAALGGGGGGPRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----G 190

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
              +  G   S+        ++  G+       ++      + A      ++ LAEP L 
Sbjct: 191 SAVNLQGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRLV 250

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   TS  T    ++GV L FTPTVLS GRI L++  E
Sbjct: 251 TISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAPE 310

Query: 336 VSEPVIG------VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE           N G +   P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 311 VSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKALP 370

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LVKP+A  D+  P D ++  ++A  +   
Sbjct: 371 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYATG 430

Query: 447 RVNKIYGPKE 456
            +    G ++
Sbjct: 431 NMEGRGGLRQ 440


>gi|51245387|ref|YP_065271.1| hypothetical protein DP1535 [Desulfotalea psychrophila LSv54]
 gi|50876424|emb|CAG36264.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 480

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 130/489 (26%), Positives = 213/489 (43%), Gaps = 41/489 (8%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
           F  M          +   P   E+ A V+    +    G+ + + +N++  L+    ++ 
Sbjct: 7   FVRMLTVSICCLLVMGGGPFAAESEATVL----INTKPGEPVQLTINRLAKLRSSEVIRR 62

Query: 69  VLVSDPTKADV---VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
             + +P  A++      SP  +++ GK++G   + L G   K +   +I++  D+  L+ 
Sbjct: 63  AHIVNPDIAELIYSKTQSPAWVFVSGKSIGTTQLTLWGARNKILGTFEIIVRPDVLGLKK 122

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
            +       N+ V    D + L G V      Q+ + L+E +            +  KV+
Sbjct: 123 HIHDVFPGENVSVRDSGDFLTLTGTVAGAVRLQKILALAEAY------------APSKVI 170

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGKFVSEG 242
           NLL + G  QV L+V IAE+ + +  Q+G    + GSS          +   GG    E 
Sbjct: 171 NLLKVGGIQQVMLEVRIAEISKRVGNQLGINFGLDGSSGFGLSMLDGLSGLPGGTLPIEP 230

Query: 243 ---------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                    G           S+   + AL+    ++ LA+PTL A SGQSASF +GG+ 
Sbjct: 231 ARVLDGLNIGSGVNAVFGKSGSYIVAIDALQEDGLVKVLAKPTLIAQSGQSASFLAGGEF 290

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMP 349
            +          S+    +GV L+FTPTVL  GRI L +  EVS+      I      +P
Sbjct: 291 PFPVAQQFDRF-SIEWKPFGVGLNFTPTVLGEGRISLLVSPEVSDLDFTNTISYAGYVVP 349

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           S   R+  T VEL    +  +AGL+K++I++  +  PLL  IPILG LFR+S++ + ETE
Sbjct: 350 SIETRRMSTVVELNDNQSFAIAGLMKNNIRESIKKFPLLGDIPILGVLFRSSKYIKNETE 409

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK-----EASEVEGQN 464
           + +  TP LV PV   +LS P D +      +      +             A+      
Sbjct: 410 LVVVVTPHLVTPVDGDELSLPTDSFVEPTAFELLVLGMLEGKEKQTYVENASATGANSLP 469

Query: 465 YKGAIGFIY 473
            +G  G+I 
Sbjct: 470 LEGDFGYIV 478


>gi|113866744|ref|YP_725233.1| flp pilus assembly protein secretin [Ralstonia eutropha H16]
 gi|113525520|emb|CAJ91865.1| flp pilus assembly protein secretin [Ralstonia eutropha H16]
          Length = 618

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 111/435 (25%), Positives = 207/435 (47%), Gaps = 22/435 (5%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
           +    A   N +   I     + + + K  ++ +   V++  + +P      + SP+T+Y
Sbjct: 74  VTSGEARGPNCT-GAIRSESSVMVPVGKSQLITLQEPVRNRTLGNPNVVQATMVSPQTLY 132

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVL 147
           + G+ VG  N+I+ G  G   + +++++  D   L+ +L + +     IRV   +D +VL
Sbjct: 133 VLGRAVGTTNMIVQGRSGSCSI-INVVVNADAGGLQTSLGQLLPGEPGIRVMTAADNLVL 191

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V   Q +Q+A+E+++ + + +            V+N+L++    QV L+V +AEV +
Sbjct: 192 TGSVTNAQTAQQAMEIAQAYANAAQGGDGNKKGG--VLNMLSVDTPQQVMLEVKVAEVSK 249

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
            +L Q+      T +  G   S++       ++           +   F+  + A +  +
Sbjct: 250 TLLNQL----GSTVNLQGGFGSWSGGLVTSLLTGASSAIFASKANNRPFDIAIDAQKNDS 305

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVL 323
            ++ LAEP L  ISGQ ASF +GG+           +  G  ++   ++GV L FTPTVL
Sbjct: 306 LVKILAEPNLVTISGQEASFLAGGKIYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVL 365

Query: 324 SPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           + GRI L++  EVSE                  +P    R+A TTV++  G +  + GLL
Sbjct: 366 ANGRIHLKVSPEVSELSPTGATIRGGTLAGQSILPVITTRRASTTVQMRDGESFAIGGLL 425

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            D  +   + +P   ++P+LG LFR++++ ++ TE+    TP LVKP+   +   P D +
Sbjct: 426 TDSARGSLKALPGAGEVPVLGTLFRSTQYQQDLTELVFVITPRLVKPMQTSNYPLPTDSF 485

Query: 435 SVEDDAKAFFFNRVN 449
           S  +    +F   + 
Sbjct: 486 STPNPLSLYFMGNME 500


>gi|167584957|ref|ZP_02377345.1| type II and III secretion system protein [Burkholderia ubonensis
           Bu]
          Length = 536

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 120/436 (27%), Positives = 213/436 (48%), Gaps = 19/436 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            + +   +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+ 
Sbjct: 82  AVRESTSVSVPLGKSMLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQ 141

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +L + +     I V   +DT+VL G V + Q +Q+A 
Sbjct: 142 GKSGACRI-IDVAVGADAGGLQASLGQLMPGERDIHVSTAADTIVLAGNVSSAQAAQQAA 200

Query: 162 ELSETFLSQSGRNQYANSSSK-KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
            +++ + +  G     ++     V+N+L +    QV L+V +AEV + ++ Q+G   +I 
Sbjct: 201 AIAKAYANAGGGGANGDNKGGGTVLNMLTVTAPQQVMLEVKVAEVSKTLINQLGSAFNIQ 260

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G     S +  ++      S      V    +   F   + A      ++ LAEP L  I
Sbjct: 261 GGFGSWSGALVSNLLAGVASGI----VANKANNRPFSVAVDAQNTDNLVKILAEPNLVTI 316

Query: 281 SGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SGQ A+F +GG+       S+TG     ++   ++GV L F PTVLS GRI L++  EVS
Sbjct: 317 SGQEATFLAGGKIFIPVPQSNTGGGTTITLQEEEFGVALRFLPTVLSNGRISLKVAPEVS 376

Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E               A  +P    R+A TTV++  G +  + GL+KD+     + +P +
Sbjct: 377 ELSQTGVTLTATNVAGASILPLITTRRASTTVQMADGESFAIGGLIKDNATGSLKAVPGI 436

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            +IP+LGAL R++ F ++ TE+    TP LVKP+   D+  P D ++  ++   F    +
Sbjct: 437 GEIPVLGALARSTSFQQDRTELIFIITPHLVKPLQTADVPLPTDSFTRTNEVDVFATGNM 496

Query: 449 NKIYGPKEASEVEGQN 464
               G ++        
Sbjct: 497 EGRGGLRKHGRAPASE 512


>gi|187919324|ref|YP_001888355.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
 gi|187717762|gb|ACD18985.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
          Length = 595

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 129/477 (27%), Positives = 221/477 (46%), Gaps = 48/477 (10%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           ++I      P  A      +  A   N S   + +   ++I + K  ++ V   V+   V
Sbjct: 80  LTIAASGMGPGAAS--GGAQQGARGPNCS-GPVAEHSSVTIPVGKSTMVDVREPVKSRSV 136

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
            +P     ++ SP+T+YL G +VG  N+I+ G  G   + +D+ +  D   L+ TL   +
Sbjct: 137 GNPAIVQAMLVSPQTLYLLGSDVGTTNMIVQGRSGSCTI-IDVSVGADPGGLQQTLAALM 195

Query: 132 ADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR----------------- 173
            +   I+V+  +DT+VL G V     ++R +EL+  F+++                    
Sbjct: 196 PEETGIQVKAAADTLVLTGTVSDAVKAERVLELARAFVARPTAALQGGAPMGSGPLPVGA 255

Query: 174 ---------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                         +S ++++N++++A   QV L+V +AEV + ++ Q+G   +I G   
Sbjct: 256 APRAMGMPAPTLGGASGERIINMMHVAAPQQVMLEVKVAEVSKTLIDQLGVAANINGGIG 315

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
             S    AD+    +S G         +       + A +    ++ LAEP L AISGQ 
Sbjct: 316 SWSFGLLADY----LSGGLSALTASKANNSPLRAAIDAQKTDQLVKILAEPNLMAISGQE 371

Query: 285 ASFTSGG--QHLYKTVSSSTGATSV-TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           ASF +GG         + + G T V     YGV L FTPTVL  GRI L++  EVSE   
Sbjct: 372 ASFLAGGKVYIPVPQSNGANGTTIVLQEEQYGVGLTFTPTVLEGGRINLKVSPEVSELSS 431

Query: 342 G---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                      N   +P    R+A TT+++  G +  + GLLK +I    +G+P  +++P
Sbjct: 432 TGVVVSAGNSNNQTILPLITTRRASTTLQVFDGQSFAIGGLLKSNITGSIKGLPGAAELP 491

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           +LGALFR++ + +++TE+    TP L KP+  +    P DH+    +A  +    + 
Sbjct: 492 VLGALFRSTSYEQDKTELVFVVTPRLAKPL-PQHYPLPTDHFGDASEANVYLTGHME 547


>gi|114799407|ref|YP_759869.1| type II/III secretion system protein [Hyphomonas neptunium ATCC
           15444]
 gi|114739581|gb|ABI77706.1| type II/III secretion system protein [Hyphomonas neptunium ATCC
           15444]
          Length = 432

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 127/433 (29%), Positives = 197/433 (45%), Gaps = 24/433 (5%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
           +A       A  A+            ++ +   K  +++       ++V+DP  A+ +  
Sbjct: 9   IASCLAALCAQPALAWTQRSAPAGADQLELRRGKSAVVEADAAFATIVVADPEIAEAMPT 68

Query: 83  SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
           S R+ ++ GK  G   V++    G     +++ ++  +  L   L R +    I V  V 
Sbjct: 69  SNRSFFVRGKKPGGTTVLIYDEAGAIAELIEVEVKLGLDELRGDLGRLLPGEIIDVYAVH 128

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
           D V L G V T   +  A++L+E  +               V N L++    QV L+V  
Sbjct: 129 DGVYLDGKVTTAAAADMALQLAERHV------------PGGVANGLSVGQSQQVMLEVRF 176

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLH 261
            E  R  +++IGF     G++   +   A   GG          +V   +   + +  L 
Sbjct: 177 LEASRKAVREIGF-----GNTIDANDVVAGTEGGTVSGLLEKTLAVFTNVGGENIDVSLR 231

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           ALE    IRTLAEP L A+SG +ASF +GG+     VSS     +V    +GV L FTPT
Sbjct: 232 ALEEKGVIRTLAEPNLVALSGDTASFLAGGEFPIP-VSSRDNEVTVEFKKFGVSLDFTPT 290

Query: 322 VLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VL  G + LR++ EVS    G     +  D+P   VR+ADTTVEL  G    +AGLL+++
Sbjct: 291 VLGDGLVNLRVRPEVSALDRGNGIRASNIDIPGVSVRRADTTVELHDGQAFAIAGLLQNN 350

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSV 436
                   P L  +PILG+LF + R+ R ETE+ I  TP LV+P +    +  P D  S 
Sbjct: 351 YTNDVRQTPWLGNVPILGSLFSSKRYQRNETELVIIVTPRLVQPFSHPEAIVSPLDSVSE 410

Query: 437 EDDAKAFFFNRVN 449
             +A+ F   +  
Sbjct: 411 PTEAELFLLGKTT 423


>gi|148253058|ref|YP_001237643.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
 gi|146405231|gb|ABQ33737.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
          Length = 496

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 130/470 (27%), Positives = 219/470 (46%), Gaps = 37/470 (7%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
           +T  ++ L ++  S+  +  I  A + V  + D  +   ++IS+  +K   +++      
Sbjct: 3   YTWAAVALMAATISIG-IYGIGPARSQVRVVQDDPV-PARQISVTRDKSRTIKLDKPFAS 60

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
            LV  P  ADV+  S R +Y+ GK +G  NV L   D   +  + + +  DI ++   +R
Sbjct: 61  ALVGAPDIADVLPMSDRIVYIQGKKIGTTNVTLFDQDKNVIGVIGLEVTIDIQNIASKIR 120

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
                  IRV   ++ +VL G  R   D+++AV ++                 K V+N +
Sbjct: 121 SGTNSPGIRVSSSNNQIVLSGEARDAVDAEKAVAIARGMA----TPPEGKDPEKYVINAM 176

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGG-- 243
            +A   QV L+V   EV R   ++IG      + +G+    + + A    G   +  G  
Sbjct: 177 RVAASQQVMLRVRFIEVSRQAEREIGVNWFGANASGTRGINTGTGAISQAGPTATSAGVP 236

Query: 244 DFSVKGVLDRFSFET------------------VLHALERATAIRTLAEPTLTAISGQSA 285
            F+  G     +                     ++ ALE+    R LAEP L A+SG +A
Sbjct: 237 VFNTIGTFAGSTLSAPFGVGLFNLANKGGSVDVLITALEKKGLARRLAEPDLVALSGDTA 296

Query: 286 SFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
           SF +GG++   +V SS+G T   +V    +GV L F PTVL+ G I LR+   VSE    
Sbjct: 297 SFLAGGEYPVPSVQSSSGTTPVITVLYKPFGVQLTFVPTVLASGIINLRLTPSVSELDYT 356

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             + ++   +P+   R+A T +EL  G +  +AGLL+ D  +    +P L  +P+LG LF
Sbjct: 357 NAVAISGTLVPALSKREARTAIELRDGQSFAIAGLLQSDNLRDVGQLPWLGSVPVLGTLF 416

Query: 399 RNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNR 447
           R++ + ++ET++ +  TP LV P A  + L+ P D     +D   F   R
Sbjct: 417 RSTSYQQKETDLVVIVTPHLVAPAAPGQALATPFDKQLPGNDVDLFLMGR 466


>gi|87199534|ref|YP_496791.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135215|gb|ABD25957.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 517

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 128/440 (29%), Positives = 204/440 (46%), Gaps = 52/440 (11%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
              + + +NK  ++     +   LV +   ADV+  + R++Y+ GK +G  ++ L    G
Sbjct: 38  AGTLEVPVNKSQVVSTDRTIAKALVGNDDIADVLPVTTRSIYVLGKKMGTTSLTLYDATG 97

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +  +D+ +  D+  L   L+ F+ +  I   + +D +VL G+V       RAV+L+ T
Sbjct: 98  RVLSIMDVAVGPDVEGLRSQLKTFVPNDKIDARLSNDAIVLSGLVNDPGAIDRAVQLART 157

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----------- 215
           +               KV+NL+++    QV L+V  AEV R     +G            
Sbjct: 158 YAG------------DKVVNLISLGSSQQVMLEVKFAEVNRTAGFDVGVSGFASKGTFES 205

Query: 216 ------------QHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGVLDRFSFET 258
                         +++G+S G S S                  G F     +D    + 
Sbjct: 206 AIGKGAQLVPGADVTVSGNSGGVSTSTTIPGASILKLSSITGSFGIFRKSFSIDGLGIDA 265

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------STGATSVTTH 310
           VL+ALE     +TLA+PTL A+SG+ ASF +GG+     V S        + GA +V   
Sbjct: 266 VLNALETKGMAKTLAQPTLLALSGERASFLAGGEFPVPVVQSGTTGTGNGNGGAITVEFK 325

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGG 366
            +GV L FTPTVL    I L ++ EVS       + V +  +P  R R+A TT+EL  G 
Sbjct: 326 PFGVSLGFTPTVLGDKTINLLVEPEVSAIDPTASLTVGSITIPGLRTRRASTTLELRDGE 385

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +  +AGLL+ D +   + +PLL  +PI+G+LFR+S F++ ETE+ I  TP LV P+    
Sbjct: 386 SFAIAGLLQKDFKTSVQQLPLLGSLPIIGSLFRSSAFSKGETELLIVVTPRLVSPIKPEQ 445

Query: 427 LSRPDDHYSVEDDAKAFFFN 446
           +  P D  +    A   F  
Sbjct: 446 VRLPTDAVTDPSAASTIFLG 465


>gi|167574003|ref|ZP_02366877.1| type II/III secretion system protein [Burkholderia oklahomensis
           C6786]
          Length = 548

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 127/431 (29%), Positives = 218/431 (50%), Gaps = 22/431 (5%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 91  EMREATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGLSVGTTNMIVQ 150

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V   Q +Q+AV
Sbjct: 151 GRSGACQI-IDVAVGADAGGLQTSLRQLMPAERDIRVSTAADTIVLAGNVSDAQAAQQAV 209

Query: 162 ELSETFLSQSG----RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
            +++ +  ++         A      V+N+L +    QV L+V +AEV + ++ Q+G   
Sbjct: 210 AIAKAYSDRTNVGPGAGAGAGGPRGGVLNMLTVTSPQQVLLEVKVAEVSKTLINQMGSAI 269

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           +I     G   S+        ++  G+       ++  F+  L A      ++ LAEP L
Sbjct: 270 NIQ----GGFGSWTGMLVSSLLAGVGNGIAASKSNKLPFKAALDAQNTDQPVKILAEPRL 325

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
             ISGQ A+F +GG+       SS   T+   +   ++GV L FTPTVLS GRI L++  
Sbjct: 326 VTISGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVGLKFTPTVLSNGRISLKVAP 385

Query: 335 EVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           EVSE                  +P    R+A TTV++  G T  + GL+KD+ Q     +
Sbjct: 386 EVSELSPTGVTLSATNVSGVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLRAL 445

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P + +IP+LGALFR++ F ++ TE+    TP LVKP+   D+  P D ++  ++   +  
Sbjct: 446 PGIGEIPVLGALFRSTSFQQDRTELVFIITPHLVKPLETADVPLPTDSFTKPNEVDVYAT 505

Query: 446 NRVNKIYGPKE 456
             +    G ++
Sbjct: 506 GNMEGRGGLRK 516


>gi|167924333|ref|ZP_02511424.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei BCC215]
          Length = 438

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 121/428 (28%), Positives = 217/428 (50%), Gaps = 20/428 (4%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           + +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ G
Sbjct: 1   MRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQG 60

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV 
Sbjct: 61  KSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVA 119

Query: 163 LSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           +++ + +++      +       V+N+L +    QV L+V +AEV + ++ Q+       
Sbjct: 120 IAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GSA 175

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
            +  G   S+        ++  G        ++      + A      ++ LAEP L  I
Sbjct: 176 VNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVTI 235

Query: 281 SGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EVS
Sbjct: 236 SGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEVS 295

Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P +
Sbjct: 296 ELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPGI 355

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    +
Sbjct: 356 GELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGNM 415

Query: 449 NKIYGPKE 456
               G ++
Sbjct: 416 EGRGGLRQ 423


>gi|209546483|ref|YP_002278401.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209537727|gb|ACI57661.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 495

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 131/492 (26%), Positives = 221/492 (44%), Gaps = 35/492 (7%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59
           M   +R      S+   ++  S         A  A      V +GK  +++++  N  + 
Sbjct: 1   MANGKRRIARTKSLAALAAVFSACVCLGPGFAGCANAQEKSVTLGKSVQRVTLPPNATLT 60

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           L       D+++      DVV  S +++++ GK +G  N+ + G D   +  +D+ +  D
Sbjct: 61  LNTGQAFGDLVIGSADMIDVVPLSDKSLFIRGKKIGATNISVYGDDKSLLGVIDVRVASD 120

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
            + +   +R     + + V   SD + L G+VR   + QR +++++++            
Sbjct: 121 FSEVAAAIRSAAPSARVIVANSSDRIRLTGIVRDGVELQRVMDIAQSY------------ 168

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFG 235
           S + V+N L ++   QV L+V + E  R   + +G   S  G++       S+    D  
Sbjct: 169 SDQPVLNQLRVSDSQQVMLEVRVIEASRQTGRDLGIGWSGRGNNGIGKATTSQGLGVDDN 228

Query: 236 GKFV--------SEGGDFSVKGVL------DRFSFETVLHALERATAIRTLAEPTLTAIS 281
           G  V        +  G      ++           + V++ALE+   +R LA+P L A+S
Sbjct: 229 GSLVRTLVDPKGAATGALPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMS 288

Query: 282 GQSASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           G +ASF +GG+      T + +T AT      +GV L F P VL  G I L I+ EVSE 
Sbjct: 289 GSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGLINLEIEPEVSEL 348

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +N    P +  R A TTV L  G +  LAGLL+    +  + +P L KIPILGALFR
Sbjct: 349 DPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQLPGLGKIPILGALFR 408

Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           ++ F ++E+++ I  TP +V+P     DL  P D     +D + F    V ++       
Sbjct: 409 STSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALG-VLEVDKDMLRR 467

Query: 459 EVEGQNYKGAIG 470
              G+   G  G
Sbjct: 468 FRNGEGVTGPYG 479


>gi|296156489|ref|ZP_06839327.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
 gi|295893088|gb|EFG72868.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
          Length = 599

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 121/475 (25%), Positives = 221/475 (46%), Gaps = 46/475 (9%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           + + +S           +      N +   + +   ++I + K  ++ V   V+   V +
Sbjct: 84  LTIAASGMGPGAYSGGAQQGGRGPNCT-GPVAEHSSVTIPVGKSAMVDVREPVKSRTVGN 142

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           P+    ++ SP+T+YL G +VG  N+I+ G  G   + +D+ +  D   L+ TL   + +
Sbjct: 143 PSIVQAMLVSPQTLYLLGSDVGTTNMIVQGRSGSCTI-IDVSVGADPGGLQQTLAALMPE 201

Query: 134 SN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR------------------- 173
              I+V+  +DT+VL G V     + R +EL+  F+++                      
Sbjct: 202 ETGIQVKAAADTLVLTGTVSDAVKADRVLELARAFVARPTTALQGGAPMGSGPLPVGAAP 261

Query: 174 -------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
                       +  ++++N++++A   QV L+V +AEV + ++ Q+G   +I G     
Sbjct: 262 RAMGMPAPSLGGAGGERIINMMHVAAPQQVMLEVKVAEVSKTLIDQLGVAANINGGIGSW 321

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           S    AD+    +S G         +    +  + A +    ++ LAEP L AISGQ AS
Sbjct: 322 SFGLLADY----LSGGLSALTASKANNSPLKAAIDAQKTDQLVKILAEPNLMAISGQEAS 377

Query: 287 FTSGGQHLYKTVSSS-TGATSV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342
           F +GG+       S+ +G T++      YGV L FTPTVL  GRI L++  EVSE     
Sbjct: 378 FLAGGKVYIPVPQSNGSGGTTIVLQEEQYGVGLTFTPTVLEGGRINLKVSPEVSELSSTG 437

Query: 343 --------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                        +P    R+A TT+++  G +  + GLLK ++    +G+P  +++P+L
Sbjct: 438 VVVSAGNSNTTSILPLITTRRASTTLQVFDGQSFAIGGLLKSNVTGSIKGLPGAAELPVL 497

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           GALFR++ + +++TE+    TP L KP+  +    P D++    +A  +    + 
Sbjct: 498 GALFRSTSYEQDKTELVFVVTPRLAKPL-PQHYPLPTDNFGDASEANVYLTGHME 551


>gi|73542329|ref|YP_296849.1| type II and III secretion system protein:transport-associated
           [Ralstonia eutropha JMP134]
 gi|72119742|gb|AAZ62005.1| type II and III secretion system protein:Transport-associated
           [Ralstonia eutropha JMP134]
          Length = 633

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 106/422 (25%), Positives = 204/422 (48%), Gaps = 20/422 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            + +   + + + K  ++ +   V++  + +P      + S +T+Y+ G+ VG  N+I+ 
Sbjct: 87  AVRQESSVIVPVGKSQLITLQEPVKNRTLGNPNVVQATMVSAQTLYVLGRTVGTTNMIVQ 146

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +++++  D   L+ +L + +     IRV   +D +VL G V   Q + +A+
Sbjct: 147 GRSGSCSI-INVVVNADAGGLQTSLSQLLPGEPGIRVMTAADNLVLTGSVTNAQSALQAM 205

Query: 162 ELSETFLSQSG-RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           ++++ + + +             V+N+L++    QV L+V +AEV + +L Q+G   ++ 
Sbjct: 206 DIAQAYANAAQVGAGGDAGKKGGVLNMLSVDTPQQVMLEVKVAEVSKTLLNQLGSSVNLQ 265

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
               G   S+        ++           +   F   + A +  + ++ LAEP L  I
Sbjct: 266 ----GGFGSWTGGLVTSLLTGASGAIFGSKANNKPFNFAIDAQKNDSLVKILAEPNLVTI 321

Query: 281 SGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           SGQ ASF +GG+       ++     G  ++   ++GV L FTPTVL+ GRI L++  EV
Sbjct: 322 SGQEASFLAGGKIYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANGRIHLKVAPEV 381

Query: 337 SEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE                  +P    R+A TTV++  G +  + GLL+D  +   + +P 
Sbjct: 382 SELSPTGATVSGGTLAGQSVLPLITTRRASTTVQMRDGESFAIGGLLQDSARGSLKALPG 441

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
             ++P+LG LFR++++ ++ TE+    TP LVKP+A  +   P D ++  D    +F   
Sbjct: 442 AGEVPVLGTLFRSTQYQQDLTELVFIITPRLVKPMATNNYPLPTDSFTTPDPFSLYFMGN 501

Query: 448 VN 449
           + 
Sbjct: 502 ME 503


>gi|217978832|ref|YP_002362979.1| type II and III secretion system protein [Methylocella silvestris
           BL2]
 gi|217504208|gb|ACK51617.1| type II and III secretion system protein [Methylocella silvestris
           BL2]
          Length = 530

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 140/487 (28%), Positives = 220/487 (45%), Gaps = 42/487 (8%)

Query: 25  KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
            L   + A +   +    E  + +++++   K    ++       +V     ADV+  S 
Sbjct: 43  GLAETQPAKSQAGSTIQYEPAQVRRVAVTRYKSRTFRMETPFSSAVVGSADIADVLPMSD 102

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
           R +Y+ GK VG  NV +   D K +  +D+ +  DI ++   +R       IRV   +D 
Sbjct: 103 RVIYIQGKRVGTTNVSIFDKDKKLIGVIDLEVTLDIQNIAAKVRSGTDSRGIRVSSNNDQ 162

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           +VL G  R   D+ RAV ++++ ++ +   +  +   K V+N +++A   QV L+V   E
Sbjct: 163 IVLSGEARNAVDADRAVSIAKSMVTTAD-GKPPDDPGKFVINAMSVAAAQQVLLRVRFVE 221

Query: 205 VRRDILKQIGFQH-------------SITGSSSGPSKSFAADFGG-------KFVSEGGD 244
           V R   + IG                +  G +S   +S     GG         +  GG 
Sbjct: 222 VNRIAERDIGVNWFGAANKTQTAGVNTGNGIASQVGQSLTPTPGGIPLFQTLATLVPGGL 281

Query: 245 FSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
            S   +        L   + + ++ ALE+    R LAEP L A+SG +ASF +GG++   
Sbjct: 282 ASTGSLPFGVGLIKLAGGNVDLLISALEKKGQARRLAEPDLIALSGDTASFLAGGEYPVP 341

Query: 297 TVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMP 349
           +V SS+G T   +   + YGV L F PTVL+ G I LR+   VSE     V+      +P
Sbjct: 342 SVQSSSGTTPVITTQYYPYGVQLTFIPTVLANGIINLRLNPSVSELDYKNVVVTAGFAIP 401

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           S   R+A TT+EL  G +  +AGLL+ D       IP L  +P+LGALF +  + + ET+
Sbjct: 402 SITKREARTTIELRDGQSFAIAGLLQSDSTHDVNQIPWLGSVPVLGALFSSKSYQQNETD 461

Query: 410 IFIAATPFLVKPVAMRD-LSRPDDHYSVEDDAKAFFFNR--VNKIYGPKEASEVEGQNYK 466
           + +  TP LV P A    ++ P D     +D   F   R  V K Y     S   G    
Sbjct: 462 LVVIVTPHLVAPAAPGQVVATPFDKTLPANDVDFFVMGRPEVRKQYTDYVTS---GGGLT 518

Query: 467 GAIGFIY 473
           G  G I 
Sbjct: 519 GPYGDIM 525


>gi|103486617|ref|YP_616178.1| type II and III secretion system protein [Sphingopyxis alaskensis
           RB2256]
 gi|98976694|gb|ABF52845.1| type II and III secretion system protein [Sphingopyxis alaskensis
           RB2256]
          Length = 493

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 137/483 (28%), Positives = 225/483 (46%), Gaps = 43/483 (8%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               ++I L ++    A   P+  A  AV N S         I + + +  ++ +P  + 
Sbjct: 12  LARTLAIGLVAATLIAAPSRPV--AAQAVQNASS-------SIDLSVGRGRLISLPAAMS 62

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           DV V+D   ADV V S R +Y+F K  G+ ++      G+ + +    +  +I  ++  L
Sbjct: 63  DVFVADDKVADVQVRSSRQLYVFAKAPGETSIYATDASGRVVFSTVARVGNNIETIDQML 122

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
              + +++I    ++  V+L G VR+  D+  A  L + F+              KV++ 
Sbjct: 123 SLAMPEASIAANTMNGFVLLTGTVRSPDDAAEAERLVQAFVGDQT----------KVLSR 172

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----------- 236
           L  A   QV L+V IAEV R ++K++        +       F     G           
Sbjct: 173 LRTATPLQVNLQVRIAEVNRSLVKELSGNLLTRDTDGPLGNGFLGGVFGGRQAGTITTDA 232

Query: 237 ------KFVSEGGDFSVKGVLDRFSFE--TVLHALERATAIRTLAEPTLTAISGQSASFT 288
                    +  G  S+ G    F  +    L   ER+  + TLA+P LTAISG++A F 
Sbjct: 233 NGNTIYSITTPPGTRSLAGAGRLFGLDLIASLDIGERSGLVATLAQPNLTAISGETADFL 292

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVN 344
           +GG+       +  G T++    YGV L +TPTVLS GRI LR++ EVSE      I + 
Sbjct: 293 AGGEFPVPIPGNFAG-TTIEYRKYGVSLAYTPTVLSNGRISLRVRPEVSELSTEGAIEMQ 351

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+  +R+A+TTVEL SG + ++AGLL +      + +P L  +P+LG LF++  F 
Sbjct: 352 GFQIPALTIRRAETTVELGSGESFMIAGLLNNRSIGAIDKMPGLGDVPLLGTLFKSDSFR 411

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           R ETE+ I  TP+LV+PV+  D+  P D +   DD +    N+ +      +  +    +
Sbjct: 412 RGETELVIVVTPYLVEPVSANDIKLPTDAFRDADDLQRLLLNQTSDGVTGGDRPKPRLDS 471

Query: 465 YKG 467
             G
Sbjct: 472 NVG 474


>gi|194288836|ref|YP_002004743.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193222671|emb|CAQ68674.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 621

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 109/421 (25%), Positives = 205/421 (48%), Gaps = 21/421 (4%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            I     + + + K  ++ +   V++  + +P+     + SP+T+Y+ G+ VG  N+I+ 
Sbjct: 86  AIRSESSVVVPVGKSQLITLQEPVRNRTLGNPSVVQATMVSPQTLYVLGRTVGTTNMIVQ 145

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +++++  D   L+ +L + +     IRV   +D +VL G V   Q +Q+A+
Sbjct: 146 GRSGSCSI-INVVVNADSGGLQTSLGQLLPGEPGIRVTTAADNLVLTGSVTNAQAAQQAM 204

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           E+++ + + +         S  V+N++++    QV L+V +AEV + +L Q+        
Sbjct: 205 EIAQAYANAAQGGDGNKKGS--VLNMMSVDTPQQVMLEVKVAEVSKTLLNQL----GSAV 258

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           +  G   S++       ++           +   FE  L A +  + ++ LAEP L  IS
Sbjct: 259 NLQGGFGSWSGGLVTSLLTGASAAVFGSKANNRPFEFALDAQKNDSLVKILAEPNLVTIS 318

Query: 282 GQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           GQ ASF +GG+       ++     G  ++   ++GV L FTPTVL+ GRI L++  EVS
Sbjct: 319 GQEASFLAGGKIYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANGRIHLKVAPEVS 378

Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E                  +P    R+A TTV++  G +  + GLL D  +   + +P  
Sbjct: 379 ELSPTGATIRGGTLAGQTILPVITTRRASTTVQMRDGESFAIGGLLTDSARGSLKALPGA 438

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            ++P+LG LFR++++ ++ +E+    TP LVKP+   +   P D +S  +    +F   +
Sbjct: 439 GEVPVLGTLFRSTQYQQDLSELVFIITPRLVKPMQTNNYPLPTDSFSAPNPLSLYFMGNM 498

Query: 449 N 449
            
Sbjct: 499 E 499


>gi|288956969|ref|YP_003447310.1| pilus assembly protein [Azospirillum sp. B510]
 gi|288909277|dbj|BAI70766.1| pilus assembly protein [Azospirillum sp. B510]
          Length = 491

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 205/441 (46%), Gaps = 32/441 (7%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ +    ++++     +V V+DP  ADV   S   +++ G+  G+  V  +    + +
Sbjct: 66  MTLDVGTSEMVRLSAPATNVYVADPEIADVQAASGTVIFVLGRKPGRTTVYALTEGDRVV 125

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           L+ DI +   +A L   +        + V    + +++ G V T   ++  +EL   F  
Sbjct: 126 LHRDIRVIHSLAPLREQITARFPGMPVTVTSAPNRLIVTGEVPTPAIAESVMELVNGFAR 185

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSG 225
                        KV+N + + G  QVTL+V +AEV R + +++GF       I   +  
Sbjct: 186 ----------PDDKVVNQMAVTGPVQVTLRVQVAEVARSVTQELGFNWEGAVKIGDFAIA 235

Query: 226 PSKS---FAADFGGKFVSEGGDFSVKGVL----DRFSFETVLHALERATAIRTLAEPTLT 278
           P        A  G    S  G  S+ G+L     + +   ++ A++    +  LA+P L 
Sbjct: 236 PGFGRDFLNATSGAIQRSATGASSLAGILKSSNGKANIAGIVDAMQDQGLVTLLAQPNLV 295

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           A+SG+ A F +GG+      +  +G+    V    YGV L+F PTVL+P RI L ++ EV
Sbjct: 296 AMSGKPAMFLAGGEFPIPVSAGDSGSNKIQVEFKQYGVALNFVPTVLAPDRIALTVRPEV 355

Query: 337 SEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           SE      + VN   +P+  VR+ +T+VEL SG +  + GLL++  +   +  P L  +P
Sbjct: 356 SELTDVGAVTVNGLTIPALTVRRVETSVELGSGESFAIGGLLQNSNRSSLKKFPGLGDLP 415

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           +LG LFR+ RF   ETE+ +  TP++V P+       P        + +     R   + 
Sbjct: 416 VLGELFRSRRFINNETELVVIVTPYVVNPIQRGPGVIPQRGTKPNREVEELLRRRQQALG 475

Query: 453 GPKEASEVEGQNYKGAIGFIY 473
            P+ A      +Y G  GFIY
Sbjct: 476 LPEPAG-----SYYGPAGFIY 491


>gi|86360580|ref|YP_472468.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42]
 gi|86284682|gb|ABC93741.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42]
          Length = 495

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 129/492 (26%), Positives = 221/492 (44%), Gaps = 35/492 (7%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59
           M   +R      S+   ++  S         A +A      + +G+  + +++  N+ + 
Sbjct: 1   MANGRRRIARTKSLAALAAVFSACVCLGPGFAGSASAQEKSITLGESVQHVTLPPNETLT 60

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           L       D+++      DVV  S +++++ GK  G  N+ + G D   +  +DI +  D
Sbjct: 61  LNTGQPFGDLVIGSADMIDVVPLSDKSLFIRGKKTGATNISVYGDDKSLLGVIDIRVASD 120

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
            + +   +R     + +RV   +D + L G VR   + QR +E+++++            
Sbjct: 121 FSEVASAIRSAAPSARVRVINSNDRIRLTGFVRDGIELQRVMEIAQSY------------ 168

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-----SGPSKSFAADF 234
           S + V+N L ++   QV L+V + E  R   + +G   S  G++     +  S+  A D 
Sbjct: 169 SDQPVLNQLRVSDSQQVMLEVRVIEASRQTGRDLGIGWSGYGNNNRIGKATTSQGIAVDD 228

Query: 235 GGKF-------VSEGGDFSVKGVL------DRFSFETVLHALERATAIRTLAEPTLTAIS 281
           G           +  G      ++           + V++ALE+   +R LA+P L A+S
Sbjct: 229 GSLARTLLDPKGAATGALPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMS 288

Query: 282 GQSASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           G +ASF +GG+      T + +T AT      +GV L F P VL  G I L I+ EVSE 
Sbjct: 289 GSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGLINLEIEPEVSEI 348

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +N    P +  R A TTV L  G +  LAGLL+    +  + +P L +IP+LGALFR
Sbjct: 349 DPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQLPGLGQIPVLGALFR 408

Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           ++ F ++E+++ I  TP +V+P     DL  P D     +D + F    V ++       
Sbjct: 409 STSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALG-VLEVDKDMLRR 467

Query: 459 EVEGQNYKGAIG 470
              G    G  G
Sbjct: 468 FRNGVGVTGPYG 479


>gi|27378611|ref|NP_770140.1| hypothetical protein blr3500 [Bradyrhizobium japonicum USDA 110]
 gi|27351759|dbj|BAC48765.1| blr3500 [Bradyrhizobium japonicum USDA 110]
          Length = 550

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 133/534 (24%), Positives = 219/534 (41%), Gaps = 73/534 (13%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISD-----VEIGKGKKISIGLNK 56
           R   +T   +++  +     +VA   P   A AA    S       E+   +++ + +NK
Sbjct: 5   RVSGKTVARLLAFGVMGLGAAVALCGPADRAEAADRRGSSGGVFVSEMNDVQRVRVVVNK 64

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
               +V      ++   P   DV   S   +Y+ GK  G  NVIL     KQ+  LD+ +
Sbjct: 65  SRTFKVDTAFATIIAGSPDIVDVKSLSDHMIYVQGKQTGTTNVILFDSAMKQIGVLDVEV 124

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
             D  +L+  +R       +RV      VVL G       ++RA+ ++ + +++ G    
Sbjct: 125 VIDTGNLQQNIRTGTGMQGVRVSASEGQVVLSGTAVDAVAAERAMAIATSTVAKGGT--- 181

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------------- 220
                  V+N +++A   QV L+V   EV R+  + +G   S                  
Sbjct: 182 -------VVNAMSVAAPQQVMLEVRFLEVSREAGRNLGVNLSAANANGTNIGNSGLGRVT 234

Query: 221 -------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---------------------- 251
                  G  +  +    A  G    +  G   V G L                      
Sbjct: 235 AAGRTPIGGINTANGPLGAGGGPVGSAPTGSLPVLGTLGTLAGTAGGIAPAPFGTLLTSL 294

Query: 252 ----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---A 304
               +  S + ++ ALE     R LAEP LT +SG +A F +GG+      + +T     
Sbjct: 295 IRTSNGGSVDMLISALETKGLARRLAEPNLTTLSGDAARFLAGGEFPVPIPTQTTNGFPT 354

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360
            ++    +GV L F PTVLS G I LR++  VSE      + +    +P+   R A TTV
Sbjct: 355 ITIEYKKFGVELAFVPTVLSRGVINLRVEPSVSELDFANAVTIQGTTVPALTRRDARTTV 414

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL  G +  +AGLL+   +Q    +P +  +P++G LF +  + +EET++ I  TP LV 
Sbjct: 415 ELRDGQSFAIAGLLQTRNRQDVSQLPWIGSVPVIGTLFSSKSYQQEETDLVIIVTPRLVA 474

Query: 421 PVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           P A  + L+ P D     +D   F   ++ ++    +     G + KG  G I 
Sbjct: 475 PAAPGQQLASPLDSRLPANDVDFFLNGQM-EVRKRYDDYVNSGGDVKGPYGHII 527


>gi|186474103|ref|YP_001861445.1| type II and III secretion system protein [Burkholderia phymatum
           STM815]
 gi|184196435|gb|ACC74399.1| type II and III secretion system protein [Burkholderia phymatum
           STM815]
          Length = 700

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/460 (27%), Positives = 220/460 (47%), Gaps = 47/460 (10%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            I   + ++I + K  ++ V   V+   V +P+    ++ SP+T+YL G +VG  N+I+ 
Sbjct: 111 AIADHQTVTIPIGKSTMVNVRESVKTRTVGNPSIVQAMLVSPQTLYLLGTDVGTTNMIVQ 170

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G     +D+ +  D   L+ TL   + + + ++V+  +DT+VL G V     ++R V
Sbjct: 171 GRSGSC-TVIDVAVGADPGGLQQTLAVLMPEESGVQVKAAADTLVLTGTVSDSVKAERIV 229

Query: 162 ELSETFLSQSG--------------------------RNQYANSSSKKVMNLLNIAGEDQ 195
           EL+  ++++                                 N ++++++N++++A   Q
Sbjct: 230 ELARAYVARQAAPVPVAAPANAGGAQGGAMIPAVLKPAGASGNGNNERIVNMMHVAAPQQ 289

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V L+V +AEV + ++ Q+     +  +  G + S++      F+S G    +    +   
Sbjct: 290 VMLEVKVAEVSKTLIDQL----GMAANIQGGTGSWSFGLLADFLSGGMGALLGSKANNKP 345

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDY 312
               + A +    ++ LAEPTL AISGQ ASF +GG+       S+  A S        +
Sbjct: 346 LNFAIDAQKTDQLVKVLAEPTLMAISGQEASFLAGGRVFIPVPQSNGAAGSTIILQEETF 405

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVELP 363
           GV L FTPTVL  GRI L++  EVSE                  +P    R+A TT+++ 
Sbjct: 406 GVGLTFTPTVLDNGRINLKVSPEVSELSPTGVAVTAGTVSTTAVLPLITTRRASTTLQVY 465

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G +  + GL+K ++    +G+P L ++P+LGALFR++ F  ++TE+    TP L KP+ 
Sbjct: 466 DGQSFAIGGLMKSNVTGTLKGLPGLGEVPVLGALFRSTNFQEDKTELVFVVTPRLAKPL- 524

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVN--KIYGPKEASEVE 461
            ++   P DH+    +A  FF   +   K   P EA    
Sbjct: 525 PQNYPLPTDHFGKVTEAGVFFTGNMEGKKPQAPAEAVPPS 564


>gi|167566934|ref|ZP_02359850.1| outer membrane protein [Burkholderia oklahomensis EO147]
          Length = 550

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 127/431 (29%), Positives = 218/431 (50%), Gaps = 22/431 (5%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 93  EMREATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGLSVGTTNMIVQ 152

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V   Q +Q+AV
Sbjct: 153 GRSGACQI-IDVAVGADAGGLQTSLRQLMPAERDIRVSTAADTIVLAGNVSDAQAAQQAV 211

Query: 162 ELSETFLSQSG----RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
            +++ +  ++         A      V+N+L +    QV L+V +AEV + ++ Q+G   
Sbjct: 212 AIAKAYSDRTNVGPGAGAGAGGPRGGVLNMLTVTSPQQVLLEVKVAEVSKTLINQMGSAI 271

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           +I     G   S+        ++  G+       ++  F+  L A      ++ LAEP L
Sbjct: 272 NIQ----GGFGSWTGMLVSSLLAGVGNGIAASKSNKLPFKAALDAQNTDQPVKILAEPRL 327

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
             ISGQ A+F +GG+       SS   T+   +   ++GV L FTPTVLS GRI L++  
Sbjct: 328 VTISGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVGLKFTPTVLSNGRISLKVAP 387

Query: 335 EVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           EVSE                  +P    R+A TTV++  G T  + GL+KD+ Q     +
Sbjct: 388 EVSELSPTGVTLSATNVSGVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLRAL 447

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P + +IP+LGALFR++ F ++ TE+    TP LVKP+   D+  P D ++  ++   +  
Sbjct: 448 PGIGEIPVLGALFRSTSFQQDRTELVFIITPHLVKPLETADVPLPTDSFTKPNEVDVYAT 507

Query: 446 NRVNKIYGPKE 456
             +    G ++
Sbjct: 508 GNMEGRGGLRK 518


>gi|258405291|ref|YP_003198033.1| type II and III secretion system protein [Desulfohalobium retbaense
           DSM 5692]
 gi|257797518|gb|ACV68455.1| type II and III secretion system protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 455

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 119/444 (26%), Positives = 205/444 (46%), Gaps = 20/444 (4%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
           R+   + +I + +         P  +    +   +  +    + + +   K ++L+   +
Sbjct: 8   RSGLLIAAIMVLTFCVWSIPQEPQAQEFRIIPTKNSADDSIMRSLELTYGKSVVLKSNRE 67

Query: 66  VQDVLVSDPTKA-DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           +  V   DP    D ++  P  +YL     G AN+IL     +     +I ++ D++ L+
Sbjct: 68  ITRVSEPDPNVLKDPLLIGPNELYLTPAGAGTANLILW-QGKEVSTVYEITVKHDLSRLK 126

Query: 125 MTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
             L     + N +RV   ++++ L G V +     + + L+ET+  + G           
Sbjct: 127 QRLHELFPEENELRVLSTNESITLSGQVSSASALDQIMALAETYAPEGG----------- 175

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           + N + + G  QV L+V +AEV R  L ++G    +   ++  S  F         S  G
Sbjct: 176 IKNQVTVKGIHQVMLEVKVAEVSRQSLDRLGINFDLINDAAEFSIGFLGAAS-AGSSGSG 234

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F+     D   F  +   L+R    + LAEP+L ++SGQ++SF +GG+     V  S G
Sbjct: 235 SFNFWRNGDNVDFNGLFDFLKREGLAKILAEPSLISMSGQTSSFLAGGEIPIPDV-DSDG 293

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTT 359
              V    YG+ L FTPTV+S  RI +++   VSE        +N   +P  +VR+A+TT
Sbjct: 294 NIGVEFKSYGIELAFTPTVMSKERIAIKVVPVVSELDEASGTVINGAQVPGLKVRRANTT 353

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VEL  G +  +AGLL ++ ++     P L  +P+LG LF +  F  +ETE+ I  TP LV
Sbjct: 354 VELGDGQSFAIAGLLSENSEETVSKFPGLGDLPVLGPLFTSKSFTSDETELVIMVTPKLV 413

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAF 443
            P+     S P D +    DA+ +
Sbjct: 414 TPLVAEKQSLPTDFFIHPTDAEFY 437


>gi|296284552|ref|ZP_06862550.1| type II and III secretion system protein [Citromicrobium
           bathyomarinum JL354]
          Length = 502

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 136/482 (28%), Positives = 219/482 (45%), Gaps = 48/482 (9%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           M +        ++ +P + +A + V    D        I + + K  ++ VP  + DV +
Sbjct: 1   MLLGAALCAAPLSIVPTMADAQSVVRPTQD--------IVLSIGKGELINVPGSMADVFI 52

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           ++ + AD+ V S R +YLFGK+ G+  V      G  +   ++ +  +I  L+  L   +
Sbjct: 53  ANDSIADIQVKSQRQLYLFGKSGGETTVYASNAAGDVIWAANVRVGSNIGSLDQMLALAM 112

Query: 132 ADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
             + I V  +  +TV+L G V   +D+  A  L   FL               V+  L  
Sbjct: 113 PQAKISVATMGSNTVLLTGTVANPEDAAEAERLVSAFLGDET----------NVIARLTT 162

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231
           A   QV L+V  AEV R +++ IG     + +++G                         
Sbjct: 163 ATPLQVNLQVRFAEVSRSLVRAIGANLLSSDATNGFQFGVTRGRNFAPQYTPGGPVGVGV 222

Query: 232 ---ADFGGKFVSEGGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSAS 286
              +D        G   ++ G+   F       L   E    + TL++P LTA+SG++A 
Sbjct: 223 TGGSDGSTVITGNGTGATIAGLGSLFGMDLAAALDLAETNGLVSTLSQPNLTALSGETAD 282

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IG 342
           F +GG+     +S   GATSV   +YGV L +TPTVL+ GRI +R+  EVSE      + 
Sbjct: 283 FLAGGEFPIP-ISQGLGATSVEYRNYGVKLTYTPTVLANGRISIRVSPEVSELSSQGAVS 341

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           ++   +P+   R+A TTVEL SG + ++AGL+ ++ Q   +  P L  +PILG LFR++ 
Sbjct: 342 LDGVQIPALITRRASTTVELGSGQSFMIAGLMTNNSQSTIDKAPGLGDVPILGNLFRSNS 401

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           F + ETE+ I  TP+LVKPV   D+  P D Y+  D      F       G  +      
Sbjct: 402 FRKGETELVIVITPYLVKPVDGNDIRLPTDGYNSPDTLSQLGFKETVPQGGVPDRPGPTT 461

Query: 463 QN 464
            +
Sbjct: 462 SD 463


>gi|327189767|gb|EGE56911.1| cpaC pilus assembly Q protein [Rhizobium etli CNPAF512]
          Length = 495

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 129/492 (26%), Positives = 221/492 (44%), Gaps = 35/492 (7%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59
           M   +R      S+   ++  S   +     A  A      V +GK  + +++  N+ + 
Sbjct: 1   MANGKRRSARTKSLAALAATFSACVILGPGFAGYASAQEKSVTLGKSVQHVTLPPNETLT 60

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           L       D+++      DVV  S +++++ GK  G  N+ + G D   +  +DI +  D
Sbjct: 61  LNTGQPFGDLVIGSADMIDVVPLSDKSLFVRGKKTGATNISVYGDDKSLLGVIDIRVASD 120

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
            + +   +R     + +RV   +D + L G+VR   + QR +E+++++            
Sbjct: 121 FSEVSAAIRSAAPTARVRVFNSNDRIRLVGVVRDSIELQRVLEIAQSY------------ 168

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------- 232
           S + V+N L ++   QV L+V I E  R   + +G   S  G+++   K+  +       
Sbjct: 169 SEQPVLNQLRVSDSQQVMLEVRIIEASRQTGRDLGIGWSGYGNNNRIGKATTSQGITVDD 228

Query: 233 -----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                            +  G   +    +     + V++ALE+   +R LA+P L A+S
Sbjct: 229 GNLARTLLDPKGAATGMLPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMS 288

Query: 282 GQSASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           G +ASF +GG+      T + +T AT      +GV L F P VL  G I L I+ EVSE 
Sbjct: 289 GSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGVINLEIEPEVSEL 348

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +N    P +  R A TTV L  G +  LAGLL+    +  + +P L +IP+LGALFR
Sbjct: 349 DPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQMPGLGQIPVLGALFR 408

Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           ++ F ++E+++ I  TP +V+P     DL  P D     +D + F    V ++       
Sbjct: 409 STSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALG-VMEVDKDMLRR 467

Query: 459 EVEGQNYKGAIG 470
              G+   G  G
Sbjct: 468 FRNGEGVTGPYG 479


>gi|149186255|ref|ZP_01864569.1| type II secretion system protein [Erythrobacter sp. SD-21]
 gi|148830286|gb|EDL48723.1| type II secretion system protein [Erythrobacter sp. SD-21]
          Length = 522

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 129/444 (29%), Positives = 211/444 (47%), Gaps = 51/444 (11%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
               ++I + + +  ++ VP ++ DV +S+   ADV V S R +YLFGK+ G+  V    
Sbjct: 33  TSPSQEIVLSIGRGELVNVPGNMADVFISNENVADVQVKSRRQLYLFGKSGGETTVYASN 92

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD-TVVLHGMVRTIQDSQRAVE 162
             G  +   ++ +  +I  ++  L   + ++ I V  + + TV+L G V   +D+  A  
Sbjct: 93  AAGDIIWAANVRVGSNIGSIDQMLSLAMPEAKINVATMGNNTVLLTGTVAAPEDAADAQS 152

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
           L + ++ +             V++ L +A   QV L+V IAEV R +++ IG   +   S
Sbjct: 153 LVQAYVGEGT----------NVISRLRMATPLQVNLQVRIAEVSRSVVRAIGVNLATVDS 202

Query: 223 SSGPSKSFAADFGGKF-----------------------------------VSEGGDFSV 247
           SSG         G                                      ++ G     
Sbjct: 203 SSGFQFGVGQGRGAVSQFQPSFVNPVTGERIQGPLAVGQEFEGEGATIIDQITPGSTLGA 262

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
            G L        L   E    + TL++P LTA+SG++A F +GG+     +S   G T++
Sbjct: 263 FGNLLGLDIGAALDLAETQGLVTTLSQPNLTALSGETAEFLAGGEFPIP-LSQGLGTTTI 321

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELP 363
              +YGV L +TPTVL+ GRI +R++ EVSE      I +N   +P+   R+A+TTVEL 
Sbjct: 322 EYKNYGVSLAYTPTVLANGRISIRVRPEVSELSSQGSITLNGFQVPALITRRAETTVELG 381

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SG + ++AGLL ++ Q   E  P L  +P++G LFR++ + + ETE+ I  TP+LVKPV 
Sbjct: 382 SGQSFMIAGLLSNNSQNSIEKAPGLGDVPVIGNLFRSTTYRKGETELVIVVTPYLVKPVN 441

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNR 447
             D+  P D Y    + +     R
Sbjct: 442 ANDIRLPTDGYLKPTEMQRLIALR 465


>gi|207744158|ref|YP_002260550.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           IPO1609]
 gi|206595562|emb|CAQ62489.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           IPO1609]
          Length = 626

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 221/464 (47%), Gaps = 43/464 (9%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
           S A     +E+ A   N +   + +  ++++ + K  ++Q+P  V++  V +P     ++
Sbjct: 73  SAATAEASRESAAKGPNCT-GAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAML 131

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEM 140
            SP+T+YL G+ VG  N+I+ G  G   + +D+ +  D   L+ TLR  +  + N++V  
Sbjct: 132 VSPQTLYLLGQEVGTTNMIVQGRSGSCSV-IDVSVGADPGGLQSTLRTLMPGAKNVQVSA 190

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYAN 178
            +D++VL G V     +Q+ ++++  F+                         G    A 
Sbjct: 191 AADSLVLGGSVSDSVQAQKVLDIANAFVMHQTRGPAQGDQGGAAQGGGAMQGLGATPGAP 250

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
             S +++N++ +    QV L+V +AEV + ++ Q+G   ++     G   S+       F
Sbjct: 251 PRSPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNVN----GAFGSWTFGALANF 306

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           +S   D       +    +  L A +    ++ LAEP+L AISGQ ASF +GG+      
Sbjct: 307 LSGSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVS 366

Query: 299 SS--STGATSV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNA 345
               + G  ++      +GV L FTPTV+  GRI L++  EVSE              N 
Sbjct: 367 QGAATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNT 426

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P    R+A TT+++  G +  + GL+K+++    + IP + ++P++GAL R++ F +
Sbjct: 427 SILPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQ 486

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           ++TE+    TP LVKP+       P D +   + A+ F    + 
Sbjct: 487 DQTELVFVVTPHLVKPL-PAQYPLPTDSFGRANPAEIFLNGNME 529


>gi|323700359|ref|ZP_08112271.1| type II and III secretion system protein [Desulfovibrio sp. ND132]
 gi|323460291|gb|EGB16156.1| type II and III secretion system protein [Desulfovibrio
           desulfuricans ND132]
          Length = 476

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 115/424 (27%), Positives = 203/424 (47%), Gaps = 25/424 (5%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A V     V+  K   IS+ + +  ++    +V  + +   T   +VV SP  +YL    
Sbjct: 23  ATVAWARVVKSDKPDMISMIIGESTVITTDQNVSRITLGSDTVCSIVVISPTQIYLTANE 82

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVR 152
           +G   + L   D +     DI ++ D   L+  +   +   N +RV    +++ L G V 
Sbjct: 83  IGSTTLTLWTGD-RVSEIYDIAVDPDTTRLKRMIYELLPQENNVRVLTSGNSITLSGQVS 141

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                   + L+E             ++  +V+NLL++ G  QV L+V +AE+ R + K+
Sbjct: 142 NATSLSSVLSLAEA------------AAPGRVVNLLSVDGIQQVMLEVRVAEMSRSVTKR 189

Query: 213 IGFQHSITGSSS------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +G   +  GS+           S+  +     +++  + +   V    +   ++ AL+  
Sbjct: 190 LGLNFAAIGSNFSIYSIINNLTSYNNEDNVFELTDNINLAGSYVSGNTTIHGMVDALKSN 249

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
             +R LAEP LT +SG++A F  GG+     + S+ G   +    +G+ L FT TV+S G
Sbjct: 250 GLVRMLAEPNLTCVSGEAAEFLVGGEVPIP-MPSALGTVGIDYKPFGIALKFTATVMSSG 308

Query: 327 RIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           RI L++  EVSE      + V+  ++P+   R+A+T VEL  G + V+AGL+ D +++  
Sbjct: 309 RINLQVNPEVSELDYSKALSVSGYEIPTISTRRANTVVELGDGQSFVIAGLISDSLKENA 368

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
              P L ++P+LG+LF +  FN  +TE+ +  T  L KPV M   + P D +   DD + 
Sbjct: 369 HKFPGLGEVPVLGSLFSSKDFNSNKTELVVLVTAHLAKPVDMATQTLPTDGFREPDDREF 428

Query: 443 FFFN 446
           + F 
Sbjct: 429 YLFG 432


>gi|328952514|ref|YP_004369848.1| type II and III secretion system protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452838|gb|AEB08667.1| type II and III secretion system protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 536

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 122/509 (23%), Positives = 209/509 (41%), Gaps = 67/509 (13%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
           YL R    ++  FL +S  +V        A             K  +I I  +   + + 
Sbjct: 53  YLSRWLSIVLLFFLLTSGRAVLAENESDFA------------SKAGRIVIAPHMSFVKRT 100

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGK-NVGQANVILIGHDGKQMLNLDILIERD-- 119
              +  V++++P+ AD  + +P  +++ GK   G  ++ L   D       +I++  D  
Sbjct: 101 QRPITRVVLANPSLADAELLTPTQLFIVGKVKQGVTSLTLWHGDNYA-ETYEIVVSFDDK 159

Query: 120 -IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
               ++  +RR +  + ++VE + + V+L G V +  D  +  ++++ F  +        
Sbjct: 160 VWNDVQAAIRRLVPRARVKVERLPEGVMLDGAVESQGDLDKVDKIAKFFFGECT------ 213

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------SITGSSS 224
                  N++ + G  QV L+V +AEV R  +KQ+G                 +  G+ +
Sbjct: 214 -------NMITVMGSQQVQLEVKVAEVSRSGIKQLGLGFLLDKDYKVAVFPSGTAAGAMA 266

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRF--------------SFETVLHALERATAIR 270
           G   + +    G   ++    +    L                     ++  L+     R
Sbjct: 267 GDRTTVSQWPTGSSDTKTSSLASVAALASPYSSAFQALVHGLNDDILGIVSLLQGQGLTR 326

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LA PTL  +SGQ A F  GG+  Y+TV  STG        +GV+L FTP VL    I +
Sbjct: 327 LLASPTLVTMSGQEAHFLVGGEIPYQTV-GSTGTPGTDFKKFGVMLKFTPYVLGDETITI 385

Query: 331 RIQTEVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            +  EVS P   +         +P    R   +T++L  G    +AGLL+DD +   + I
Sbjct: 386 SVDPEVSAPDYTLGTTTSSGTTVPGLITRTGHSTLQLKDGQVFAMAGLLRDDFRSTVKKI 445

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHY-SVEDDAKAF 443
           P L  +PILG LF +  F R ETE+ I   P +V+ +  +++   P  +      D   F
Sbjct: 446 PFLGNLPILGTLFTSKEFQRSETELMIIVKPKIVRALNPQEVPALPGSNMERDVSDLDFF 505

Query: 444 FFNRVNKIYGPKEASEVE-GQNYKGAIGF 471
             NR     G   A       ++ G IGF
Sbjct: 506 ILNRGWPKTGASSAPPPAKAPSFVGEIGF 534


>gi|207728106|ref|YP_002256500.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           MolK2]
 gi|206591351|emb|CAQ56963.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           MolK2]
          Length = 626

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 222/464 (47%), Gaps = 43/464 (9%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
           S A     +E+ A   N +   + +  ++++ + K  ++Q+P  V++  V +P     ++
Sbjct: 73  SPATAEASRESAAKGPNCT-GAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAML 131

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEM 140
            SP+T+YL G+ VG  N+I+ G  G   + +D+ +  D   L+ TLR  +  + N++V  
Sbjct: 132 VSPQTLYLLGQEVGTTNMIVQGRSGSCSV-IDVSVGADPGGLQSTLRTLMPGAKNVQVSA 190

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQS----------------------GRNQYAN 178
            +D++VL G V     +Q+ ++++  F+ +                       G    A 
Sbjct: 191 AADSLVLGGSVSDSVQAQKVLDIANAFVMRQTRGPAQGDQGGAAQGGGAMQGLGATPGAP 250

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
             S +++N++ +    QV L+V +AEV + ++ Q+G   ++     G   S+       F
Sbjct: 251 PRSPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNVN----GAFGSWTFGALANF 306

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           +S   D       +    +  L A +    ++ LAEP+L AISGQ ASF +GG+      
Sbjct: 307 LSGSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVS 366

Query: 299 SS--STGATSV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNA 345
               + G  ++      +GV L FTPTV+  GRI L++  EVSE              N 
Sbjct: 367 QGAATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNT 426

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P    R+A TT+++  G +  + GL+K+++    + IP + ++P++GAL R++ F +
Sbjct: 427 SILPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQ 486

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           ++TE+    TP LVKP+       P D +   + A+ F    + 
Sbjct: 487 DQTELVFVVTPHLVKPL-PAQYPLPTDSFGRANPAEIFLNGNME 529


>gi|300704930|ref|YP_003746533.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957]
 gi|299072594|emb|CBJ43944.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957]
          Length = 622

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 222/464 (47%), Gaps = 43/464 (9%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
           S A     +E+ A   N +   + +  ++++ + K  ++Q+P  V++  V +P     ++
Sbjct: 73  SAATAEASRESAAKGPNCT-GAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAML 131

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEM 140
            SP+T+YL G+ VG  N+I+ G  G   + +D+ +  D   L+ TLR  +  + N++V  
Sbjct: 132 VSPQTLYLLGQEVGTTNMIVQGRSGSCSV-IDVSVGADPGGLQSTLRTLVPGAKNVQVSA 190

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQS----------------------GRNQYAN 178
            +D++VL G V     +Q+ ++++  F+ +                       G    A 
Sbjct: 191 AADSLVLSGSVSDSVQAQKVLDIANAFVMRQTRGPAQGDQGGAAQGGGAMQGLGATPGAP 250

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
             S +++N++ +    QV L+V +AEV + ++ Q+G   ++     G   S+       F
Sbjct: 251 PRSPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNVN----GAFGSWTFGALANF 306

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           +S   D       +    +  L A +    ++ LAEP+L AISGQ ASF +GG+      
Sbjct: 307 LSGSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVA 366

Query: 299 SS--STGATSV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNA 345
               + G  ++      +GV L FTPTV+  GRI L++  EVSE              N 
Sbjct: 367 QGAATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNT 426

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P    R+A TT+++  G +  + GL+K+++    + IP + ++P++GAL R++ F +
Sbjct: 427 SILPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQ 486

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           ++TE+    TP LVKP+       P D +   + A+ F    + 
Sbjct: 487 DQTELVFVVTPRLVKPL-PAQYPLPTDSFGQANPAEIFLNGNME 529


>gi|153006805|ref|YP_001381130.1| type II and III secretion system protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030378|gb|ABS28146.1| type II and III secretion system protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 490

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 131/501 (26%), Positives = 229/501 (45%), Gaps = 59/501 (11%)

Query: 10  TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
            ++   L ++ P+VA+    ++A A      D E+G  +++S+   +  +L +   +  +
Sbjct: 8   ALLVTLLVAAGPAVAQ----EQAQATPALRIDREMGAAREMSLEAGQNRLLIISEQIARI 63

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
            V++P  AD+ V +P  + L  K VG  ++ L   D + ++ + + + R++  L   +++
Sbjct: 64  AVANPDVADLKVVTPTQVLLTAKGVGTTDLTLWNRDNQPLV-IALQVGRNLEALRTQVKQ 122

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
                N+++    D VVL G V  ++  +R  E++                 +KV NL+ 
Sbjct: 123 LFPGENVKITASGDLVVLSGEVTDVRLPERVAEVARLHA-------------EKVANLIQ 169

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSV 247
           ++G  QV L+V  AEV R  L+++G                 ++    G+F++   + S+
Sbjct: 170 VSGVQQVQLQVRFAEVARGGLRELGVNLFHKSDDFRTVGGLFSNRTLPGEFLNTNQNPSI 229

Query: 248 KGV-----------------------------LDRFSFETVLHALERATAIRTLAEPTLT 278
            G                              +D F F  +L  LE+    ++LAEPTL 
Sbjct: 230 PGTGPRGLAGNGFPPDVPAPAFQNAFSVFLSRMDDFPFSVMLSLLEQNNLAKSLAEPTLV 289

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           A+SGQ A F +GG+      SS  G TSV    +G+ L FTPTV+    I L ++TEVS+
Sbjct: 290 ALSGQGARFLAGGELPIPLASS-FGQTSVEWKRFGIQLEFTPTVIGD-AIHLTMKTEVSD 347

Query: 339 P----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                 + +    +P    R+++T++ L  G +  +AGL+ D I+     +P +  IPIL
Sbjct: 348 IDPSLAVTIAGTSVPGLTSRQSETSIRLADGQSFAIAGLVSDRIRSQVAKVPFIGSIPIL 407

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFNRVNKIY 452
           GALFR+  F R+E+E+ +  T  LVKPVA  +L   P +   +   D   +      K  
Sbjct: 408 GALFRSQAFQRDESELIVVVTAHLVKPVAPHELPPLPTEYEMNDPGDLPFYLLGSQGKSA 467

Query: 453 GPKEASEVEG--QNYKGAIGF 471
              E  +     +   G  GF
Sbjct: 468 QIAEKRQPASPERGPSGQSGF 488


>gi|17545374|ref|NP_518776.1| outer membrane channel protein [Ralstonia solanacearum GMI1000]
 gi|17427666|emb|CAD14185.1| probable pilus assembly protein, secretin cpac [Ralstonia
           solanacearum GMI1000]
          Length = 634

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 115/459 (25%), Positives = 217/459 (47%), Gaps = 48/459 (10%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++++ + K  ++Q+   V+   V +P     ++ SP+T+YL G++VG  N+I+ G  G  
Sbjct: 97  EVTVPVGKSTMVQLTEPVRSRTVGNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSC 156

Query: 109 MLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + +D+ +  D   L+ TL   + + S +RV   +D++VL G V     +Q+ ++++  F
Sbjct: 157 SV-IDVSVGADPGGLQATLHALMPEASRVRVSAAADSLVLGGTVSDSVQAQKIIDIANAF 215

Query: 168 LSQSGRNQYANS-----------------------------SSKKVMNLLNIAGEDQVTL 198
           + +  R    +                               + +++N++++    QV L
Sbjct: 216 VMRETRGPAQSGQTGTMGMQGMTAMSTGNAATASSGSGEAVRNPRIINMMSVEAPQQVML 275

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           +V +AEV + ++ Q+G   ++ GS      S+       F+S   D       ++  F+ 
Sbjct: 276 EVKVAEVSKTLINQMGAALNLNGSFG----SWTFGALANFLSGAPDIFSADKANKLPFQL 331

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-STGATSV--TTHDYGVV 315
            + A +    ++ LAEP L AISGQ ASF +GG+       S  TG T++      +GV 
Sbjct: 332 RVDAQKGDGLVKVLAEPNLMAISGQEASFLAGGKVYIPVPQSFGTGTTTILLQEETFGVG 391

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGG 366
           L FTPTVL  GRI L++  EVSE                  +P    R+A TT+++  G 
Sbjct: 392 LRFTPTVLENGRINLKVAPEVSELSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHDGQ 451

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +  + GL+K ++    + IP + ++P++GAL R++ F +++TE+    TP LVKP+   +
Sbjct: 452 SFAIGGLIKSNVTGSLKAIPGVGELPVIGALARSTSFQQDQTELLFVVTPHLVKPL-PAN 510

Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
              P D +   +  + +    +      + A      ++
Sbjct: 511 YPMPTDSFGPVNQGEVYLNGNMEGHPASRPAPAPTQGSF 549


>gi|237800794|ref|ZP_04589255.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023652|gb|EGI03709.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 432

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 126/410 (30%), Positives = 201/410 (49%), Gaps = 18/410 (4%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
             +  G    I + + +  +L     V  V+V++P  AD+ V SP  +Y+FGK  GQ ++
Sbjct: 21  QTIAKGAEGTIDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKTAGQTSL 80

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I +  +G++   L + +    A +   L+     S  R+    + V+  G V+ + ++  
Sbjct: 81  IALDSEGRETAALSLAVSSGTAAVTRPLKALHPQSRARISASGNRVIASGSVQDVGEATD 140

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              L    LS  G+N  ++      +N    AG  QV ++V  AEV R  L + G   + 
Sbjct: 141 LNAL----LSSEGQNFQSS------VNSATYAGAAQVNIRVRFAEVSRSELLRYGVNWNA 190

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKG---VLDRFSFETVLHALERATAIRTLAEPT 276
             ++   S            +  G  +V          + + +L AL+    +  LAEP 
Sbjct: 191 LFNNGTFSFGLLTGGSLAADAASGASNVISAGLTSGNVNIDAMLEALQSNGVLEVLAEPN 250

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           +TA++GQ+ASF +GG+     V  +     +    YGV L F+PT+L  GRI L+++ EV
Sbjct: 251 ITAMTGQTASFLAGGEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEV 309

Query: 337 S----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           S       + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +P
Sbjct: 310 SSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMP 369

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           ILG LFR+ RF R ETE+ I  TP+LV+PV  R  + P D       A A
Sbjct: 370 ILGNLFRSKRFQRNETELVILITPYLVEPVKERVAATPLDKQRATSTASA 419


>gi|13475294|ref|NP_106858.1| type II secretion system protein [Mesorhizobium loti MAFF303099]
 gi|14026045|dbj|BAB52644.1| type II secretion system protein [Mesorhizobium loti MAFF303099]
          Length = 432

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 125/442 (28%), Positives = 200/442 (45%), Gaps = 20/442 (4%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
             +      +   I     +S  L K + L  P     + V+DPT AD    S  T+++F
Sbjct: 1   MQDQGAPRAASNSIDGTLNLSSSLGKTVHL--PAPATTIFVADPTIADYQAASNTTIFVF 58

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           GK  G+ ++  +   G+ +  L I++ + I  L   L   + DS+I+V       +L G 
Sbjct: 59  GKKSGRTSLFALDDKGEALAALRIVVTQPIEELRAMLMDQVGDSSIQVSYTPRGAILSGT 118

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
               + +  A  ++E +L              +V+N + +AG  QV L V +AEV R  +
Sbjct: 119 APNAEVADTAKRVTEQYLGDGA----------QVVNNIKVAGSLQVNLSVRVAEVSRSAM 168

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--SFETVLHALERATA 268
           K +G   S  G          +  G    +  G  +     +    +   VL AL +   
Sbjct: 169 KALGVNLSAFGQIDNFRVGLLSGGGTGSGAAQGGGTAGIGFNNGAVNIGAVLDALAKEHI 228

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
              LAEP LTA+SG++ASF +GG+     +       SV    +GV L F PTVL+  RI
Sbjct: 229 ASVLAEPNLTAMSGETASFLAGGEFPIPVL-QENKQVSVEFRHFGVSLEFVPTVLNNNRI 287

Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            + ++ EVSE      + +N   +P+   R+ADT VEL SG +  + GL++ ++      
Sbjct: 288 NIHVKPEVSELSSQGAVQINGISVPAVSTRRADTVVELASGQSFAIGGLIRRNVNNNVSA 347

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAF 443
            P L ++PILGALFR+S F +EE+E+ I  TP++VKP  +   +S P D  +   D    
Sbjct: 348 FPWLGEMPILGALFRSSSFQKEESELIILVTPYIVKPGSSPNQMSAPTDRMAPALDDPPA 407

Query: 444 FFNRVNKIYGPKEASEVEGQNY 465
              R              G+ +
Sbjct: 408 DPPRGRAAARTGAPGAKRGRGF 429


>gi|148557761|ref|YP_001265343.1| type II and III secretion system protein [Sphingomonas wittichii
           RW1]
 gi|148502951|gb|ABQ71205.1| type II and III secretion system protein [Sphingomonas wittichii
           RW1]
          Length = 526

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 134/493 (27%), Positives = 211/493 (42%), Gaps = 68/493 (13%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
            +   +  +  + +         AAV   +  +  +   +SIG  +  ++ +   + D+ 
Sbjct: 12  ALITAIALAPVAASAAVRPSRGAAAVRTATIGKPSETTTLSIGSGQ--MIALSAPISDLF 69

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V+D   ADV V S   +YLFGK  G+  V      G  + +  + +  +I  ++  L+  
Sbjct: 70  VADDKIADVQVRSTTQLYLFGKGAGETAVYATDKAGNVVWSSIVRVGSNITSVDTMLKLA 129

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           + ++ I    ++  V+L G V +  D + A +L E F+ +            +V+N L  
Sbjct: 130 MPEAAITATTMNGIVLLTGTVASPSDVEEAQKLVEQFVGKET----------QVVNRLKS 179

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQ---------------------------------- 216
           A   QV+L V IAEV R+  K IG                                    
Sbjct: 180 AVPLQVSLHVKIAEVSREFAKSIGINLLNRDTTGGFLFGVAQGRNFGSIGNLDTSAFPKL 239

Query: 217 -----------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
                            +  TG       ++  D  GK    G  F + G          
Sbjct: 240 DASSLYGLPAGSLSLPFNPATGQFIAGGTAYTFDKLGKGAGSGTSFGLAGKFLGMDLAAA 299

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           +   E    + TLA+P LTAISG++ASF +GG+     ++   GA SV    YGV L FT
Sbjct: 300 IDLAEADGLVTTLAQPNLTAISGETASFLAGGEIPIP-LAQGLGAVSVEFKQYGVSLSFT 358

Query: 320 PTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PTVL  GRI +R++ EVS+        +N   +P    R+A+TTVEL SG   ++ GLL 
Sbjct: 359 PTVLGDGRISIRVRPEVSQLTDAGSVRLNGFTIPGITTRRAETTVELGSGQAFMIGGLLS 418

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           +      +  P L  +PILGALFR++ F R ETE+ I  TP+LVKPV+ + ++ P     
Sbjct: 419 NAQNSNVDKAPFLGDLPILGALFRSNGFKRNETELMIVVTPYLVKPVSPQQIALPTAGLR 478

Query: 436 VEDDAKAFFFNRV 448
              D +     + 
Sbjct: 479 AATDGERLIAGQT 491


>gi|299067807|emb|CBJ39018.1| pilus assembly secretion protein [Ralstonia solanacearum CMR15]
          Length = 635

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 117/461 (25%), Positives = 217/461 (47%), Gaps = 50/461 (10%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++++ + K  ++Q+   V+   V +P     ++ SP+T+YL G++VG  N+I+ G  G  
Sbjct: 97  EVTVPVGKSTMVQLSEPVRSRTVGNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSC 156

Query: 109 MLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            + +D+ +  D   L+ TL   + + S +RV   +D++VL G V     +Q+ ++++  F
Sbjct: 157 SV-IDVSVGADPGGLQATLHALMPEASRVRVSAAADSLVLGGTVSDSVQAQKIMDIANAF 215

Query: 168 LSQSGRNQYANS-------------------------------SSKKVMNLLNIAGEDQV 196
           + +  R    +                                 + +++N++++    QV
Sbjct: 216 VMRETRGPAQSGQAGTMGMQGMTAMSTGNAATASSGSGSGEAVRNPRIINMMSVEAPQQV 275

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            L+V +AEV + ++ Q+G   ++ GS      S+       F+S   D       ++  F
Sbjct: 276 MLEVKVAEVSKTLINQMGAALNLNGSFG----SWTFGALANFLSGAPDIFSVDKANKLPF 331

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-STGATSV--TTHDYG 313
           +  L A +    ++ LAEP L AISGQ ASF +GG+       S  +G TS+      +G
Sbjct: 332 QLKLDAQKGDGLVKVLAEPNLMAISGQEASFLAGGKVYIPVPQSFGSGTTSILLQEETFG 391

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVELPS 364
           V L FTPTVL  GRI L++  EVSE                  +P    R+A TT+++  
Sbjct: 392 VGLRFTPTVLENGRINLKVAPEVSELSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHD 451

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G +  + GL+K +I    + IP + ++P++GAL R++ F +++TE+    TP LVKP+  
Sbjct: 452 GQSFAIGGLIKSNITGSLKAIPGVGELPVIGALARSTSFQQDQTELLFVVTPHLVKPL-P 510

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
            +   P D +   +  + +    +      + A      ++
Sbjct: 511 ANYPMPTDSFGPVNQGEVYLNGNMEGHPAQRPAPASTQGSF 551


>gi|319782173|ref|YP_004141649.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317168061|gb|ADV11599.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 481

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 120/453 (26%), Positives = 206/453 (45%), Gaps = 32/453 (7%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           A     DV      +I + +++ + +QV  ++ D++V D   AD    + RT+Y+ GK  
Sbjct: 28  AADRFIDVSTPAVHRIFLPMSQSVTIQVSANLGDIVVGDEKIADAQPMTDRTLYVIGKGA 87

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           G   V L   D + +  L I +  D++ +   +R+    S I V  V+  V L G V+  
Sbjct: 88  GTTTVNLFSTDKRSLGALQIEVGVDVSDMAQAIRQVAPKSRIEVGSVNGRVRLGGHVKDG 147

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
                 + +++ +                V+N + +    QV L+V + E +R+  + +G
Sbjct: 148 ATLAAIMAVAQQY------------GPDAVINSVIVDDSQQVNLEVRVLEAKRNTGRDLG 195

Query: 215 FQH---SITGSSSGPSKSFAADFGGKF-------------VSEGGDFSVKGVLDRFSFET 258
                 +  G++   +   A D  G                +  G    + +      + 
Sbjct: 196 VSIKSRNGDGTTRTGTGVAAVDEDGVVLGPGGLLSGLLSNSAPFGALITRVIDSNIKVDL 255

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           ++ ALE   A+RTLA P LT +SG+ ASF +GG+   +T+    G  S+    +GV L F
Sbjct: 256 IIEALESKGAVRTLANPNLTTLSGEQASFNAGGEVPIRTL-DKDGEISIVYKQFGVNLLF 314

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           TP VL  G+I + +  EVS+      AGD P +  RK  T VEL  G +  + GLL    
Sbjct: 315 TPVVLDDGKIHMNLAPEVSDLTGFTTAGD-PIFTNRKLATVVELRDGQSFAVGGLLSSKT 373

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVE 437
            +L++ +P L ++P++G LFR+S   +EETE+ +  TP +V+PV     L+ P D     
Sbjct: 374 TKLQDQVPWLGQVPVIGTLFRSSSNQKEETELVVIVTPHIVRPVKPGEQLATPFDKTRPA 433

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
           +D + F   ++ ++          G+   G  G
Sbjct: 434 NDPEFFVLGQL-EVTKDMVRKYETGEGVTGPYG 465


>gi|330876206|gb|EGH10355.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 437

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 128/440 (29%), Positives = 206/440 (46%), Gaps = 27/440 (6%)

Query: 10  TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
           T++  F  ++   +       E          +  G    + + + +  +L     V  V
Sbjct: 5   TVLRFFTVAAGMLLIATGACAE---------TIAKGAKGTVDLAIGEGRVLHFSAPVDSV 55

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
           +V++P  AD+ V SP  +Y+FGK  GQ ++I +  +G++   L + +    A +   L+ 
Sbjct: 56  MVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDSEGRETAALSLAVSSGTAAVTRPLKA 115

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
               S  R+      V+  G V+ + ++     L    LS  G+N       +  +N   
Sbjct: 116 LHPQSQARINASGSRVIASGSVQDVGEATDLNAL----LSTEGQNF------QSTVNSAT 165

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFS 246
            AG  QV ++V  AEV R  L + G   +     G+ S    +                S
Sbjct: 166 YAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNGTFSFGLLTGGGLAADAAGGASNVIS 225

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                   + + +L AL+    +  LAEP +TA++GQ+ASF +GG+     V  +     
Sbjct: 226 AGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMTGQTASFLAGGEVAVP-VPVNREVVG 284

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVEL 362
           +    YGV L F+PT+L  GRI L+++ EVS       + VN   +PS+RVR+ADT VE+
Sbjct: 285 IEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTSTLDVNGYQVPSFRVRRADTRVEV 344

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            SG T  +AGL + +  Q  + +P+L  +PILG LFR+ RF R ETE+ I  TP+LV+PV
Sbjct: 345 GSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRSKRFQRNETELVILITPYLVEPV 404

Query: 423 AMRDLSRPDDHYSVEDDAKA 442
             R ++ P D       A A
Sbjct: 405 KARVVATPLDKQRAASTASA 424


>gi|170692564|ref|ZP_02883726.1| type II and III secretion system protein [Burkholderia graminis
           C4D1M]
 gi|170142220|gb|EDT10386.1| type II and III secretion system protein [Burkholderia graminis
           C4D1M]
          Length = 614

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 119/455 (26%), Positives = 209/455 (45%), Gaps = 25/455 (5%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
              S N + A+     +  AA          +   + + + K  ++Q    V++  + +P
Sbjct: 56  MTISMNAAPAQPSSAMQNAAARGPACTRTQSEQSTVVVPVGKSTLMQTAEPVRNRTLGNP 115

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
             A   + SP+T+Y+ G  VG  N+I+ G  G     +++++  D   L+ +L + + D 
Sbjct: 116 LIAQATMVSPKTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADAGGLQTSLSQLMPDE 174

Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS------QSGRNQYANSSSKKVMNL 187
             IRV  V+  +VL G V + Q + +A E+++ +            N   N  S  V+N+
Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARTTLPNPNGAANGNGNGKSATVLNM 234

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           +++    QV L+V +AEV + +L Q+        +  G   S++       ++       
Sbjct: 235 MSVDSPQQVMLEVKVAEVSKTVLNQL----GAAMNIQGGFGSWSGALISSLLAGVSSIVD 290

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
               +   F   + A      ++ LAEP L  +SGQ A+F +GG+       S+    S 
Sbjct: 291 VNKANNRPFNVAIDAQHGDNLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGVST 350

Query: 308 ---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRK 355
                 ++GV L FTPTVL+ GRI L++  EVSE              N   +P    R+
Sbjct: 351 IILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITTRR 410

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A TTV++  G T  + GL+K +     + IP + ++P+LGALFR++ + ++ TE+    T
Sbjct: 411 ASTTVQMNDGETFAIGGLIKSNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELVFIIT 470

Query: 416 PFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           P LVKP+    +L  P DH    ++A  +    + 
Sbjct: 471 PHLVKPLQTASNLPLPTDHLKTPNEADVYLMGNME 505


>gi|307726375|ref|YP_003909588.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
 gi|307586900|gb|ADN60297.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
          Length = 616

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 114/457 (24%), Positives = 208/457 (45%), Gaps = 27/457 (5%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
              S N +  +     ++ AA            + + + + K  ++     V++  + +P
Sbjct: 56  MTISMNAAPPQPASAMQSAAARGPACTRTQSDQRTVVVPVGKSTLMPTAEPVRNRTLGNP 115

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
             A   + SP+T+Y+ G  VG  N+I+ G  G     +++++  D   L+ +L + + D 
Sbjct: 116 LVAQATMVSPQTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADSGGLQTSLSQLMPDE 174

Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS--------GRNQYANSSSKKVM 185
             IRV  V+  +VL G V + Q + +A E+++ +   +          N  A   +  V+
Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARSTLPGASGGANGNGTAAGKTATVL 234

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           N++++    QV L+V +AEV + +L Q+        +  G   S++       ++     
Sbjct: 235 NMMSVDSPQQVMLEVKVAEVSKTVLNQL----GAAMNIQGGFGSWSGALISSLLAGVSSI 290

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
                 +   F   +        ++ LAEP L  +SGQ A+F +GG+       S+    
Sbjct: 291 VDVNKANNRPFNVAIDGQHGDNLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGV 350

Query: 306 SV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRV 353
           S       ++GV L FTPTVL+ GRI L++  EVSE              N   +P    
Sbjct: 351 STIILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITT 410

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+A TTV++  G T  + GL+K++     + IP + ++P+LGALFR++ + ++ TE+   
Sbjct: 411 RRASTTVQMNDGETFAIGGLIKNNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELVFI 470

Query: 414 ATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVN 449
            TP LVKP+    +L  P D     ++A  +    + 
Sbjct: 471 ITPHLVKPLQTAANLPLPTDRLKTPNEADVYLMGNME 507


>gi|307293450|ref|ZP_07573296.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
 gi|306881516|gb|EFN12732.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
          Length = 499

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 131/429 (30%), Positives = 215/429 (50%), Gaps = 32/429 (7%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
           NAA  ++ D        I + +    ++ +P  + DV++ DP   DV V S   +YL  K
Sbjct: 36  NAAPASMQDNA------ILLSVGGSKVINLPAKMSDVVIGDPDVVDVHVRSQNQLYLIAK 89

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G+  V     +GK + +  + +  ++  ++  L+  + ++ I V  ++  V+L G + 
Sbjct: 90  KAGETTVFATAINGKVLFSGTVRVGNNLTSIDDMLKLAMPNAEIAVNKMNGMVLLTGTIA 149

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
             +D+  A  L++ F+ +             V++ L  A   QV L+V IAEV +D+  +
Sbjct: 150 APEDAAEAERLTQAFVGKEVT----------VVSRLRTATPLQVNLQVKIAEVSKDVGHK 199

Query: 213 IGFQHSITGSSSGPSK-----------SFAADFGGKFV-SEGGDFSVKGVLD--RFSFET 258
           IG        + G              +F +  GG F  +  G +S+ GV          
Sbjct: 200 IGMNWKSQDLTGGKWAGGIGGGTRDAITFNSGGGGTFNFTADGGYSLAGVARVLGLDLGA 259

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           VL   E +    TLA+P LT++SG++ASF +GG++ Y TVS+ T   S+    YGV L F
Sbjct: 260 VLDLAESSGLATTLAQPNLTSLSGETASFLAGGEYPY-TVSNGTQGNSIEFKQYGVQLAF 318

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           TPTVL+ GRI LR++  V   +    +  +P+ R R A+TTVEL SG   ++AGLL +D 
Sbjct: 319 TPTVLADGRISLRVRPTV-SSLDFSVSSSVPALRSRTAETTVELGSGQAFMIAGLLNNDT 377

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
                 +P +  +PILG+LF++  F R ETE+ I  TP+LVKP+   D+  P D +   +
Sbjct: 378 ANNINKVPGIGNLPILGSLFKSRNFQRHETELVIVVTPYLVKPMNASDVRLPTDGFRNAN 437

Query: 439 DAKAFFFNR 447
           + +  F  +
Sbjct: 438 EGQGLFLQQ 446


>gi|152994347|ref|YP_001339182.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
 gi|150835271|gb|ABR69247.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
          Length = 463

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 125/446 (28%), Positives = 220/446 (49%), Gaps = 20/446 (4%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPI---KEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
              +  +FL S     A L P+    E+ + +   +  ++     +++ +N+  +L +P 
Sbjct: 10  VPLLFGVFLLSGVSRAAYLEPMNNTSESQSVIGTSAYQQVEVSGNVNLVVNRGKLLTLPQ 69

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           +   VL+++P  A   + SP  +++F K  G  ++  +  + + +L L +    D+  L 
Sbjct: 70  NAAKVLIANPDIASFQMPSPDNVFVFAKKSGSTSLYALDDENQVILALTLNAGYDLNSLT 129

Query: 125 MTLRRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK- 182
             + + +  SN++V   ++  +++ G V+T Q ++R ++  E F+           S   
Sbjct: 130 KQVAQEVPGSNVQVGPATENGLIVRGSVQTPQQAKRVIDSVEAFVGGDATGSAGAGSQTL 189

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++N L +    Q+ + V I EV R++   +GF       +    K FA +    F +  
Sbjct: 190 RIVNQLKVELSSQINISVRIVEVSRNLSSSLGFSWDALFDNG---KYFARNSASLFDATT 246

Query: 243 GDFSVKGVLD------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           G F+  GV +        +   VL AL        LAEP LTA+SG++A F  GG+    
Sbjct: 247 GAFTGSGVTNAVFGGASGNLGGVLSALSNDGLASILAEPNLTAMSGETAGFAVGGEVPIV 306

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYR 352
            ++++    ++    YGV++  TPT+LSP RI L I  EVS+      + +    +P+++
Sbjct: 307 IITNNN--VTIEYKQYGVIMRMTPTLLSPNRISLHIAPEVSDLTEEGAVELQGLTVPAFK 364

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           VR+ADTTVEL SG +  LAG+L+  + Q   G+P L  IP LG LF +    +EETE+ I
Sbjct: 365 VRRADTTVELASGQSFALAGMLRSSVSQTVTGVPGLRSIPGLGRLFESETNQKEETELVI 424

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVED 438
            AT ++V P +  DL  P    S  D
Sbjct: 425 IATAYVVAPTSSGDLQTPAKGISTID 450


>gi|330985203|gb|EGH83306.1| type III secretion component [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 429

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 125/409 (30%), Positives = 200/409 (48%), Gaps = 18/409 (4%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           ++  G    + + + +  +L     +  V+V++P  AD+ V SP  +Y+FGK  GQ ++I
Sbjct: 19  NIAKGAKGTVDLAIGEGRVLHFSAPLDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLI 78

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +  +G++   L + +    A +   L+     S  R+      V+  G V+ + ++   
Sbjct: 79  ALDSEGRETAALSLAVSSSTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDL 138

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI- 219
             L    LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   +  
Sbjct: 139 NAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNAL 188

Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
              G+ S    +  A             S        + + +L AL+    +  LAEP +
Sbjct: 189 FNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNI 248

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TA++GQ+ASF +GG+     V  +     +    YGV L F+PT+L  GRI L+++ EVS
Sbjct: 249 TAMTGQTASFLAGGEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVS 307

Query: 338 ----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                  + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PI
Sbjct: 308 SLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPI 367

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           LG LFR+ RF R ETE+ I  TP+LV+PV  R ++ P D       A A
Sbjct: 368 LGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 416


>gi|295700370|ref|YP_003608263.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1002]
 gi|295439583|gb|ADG18752.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1002]
          Length = 634

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 113/464 (24%), Positives = 213/464 (45%), Gaps = 37/464 (7%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
           +  A     N +  EI     +S+ + K I++ +    ++  + +P  A   + S RT+Y
Sbjct: 84  VAPAQLTGPNCT-GEIRDESNVSVAVGKSILVPLVEPARNRTLGNPVVAQATLVSQRTLY 142

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVL 147
           + G +VG  N+I+ G  G   + +D+ +  D   L+ TL + + +   IRV   +  +VL
Sbjct: 143 VVGMSVGTTNMIVQGRSGACQI-IDVSVGVDAEGLQRTLAQLLPNERGIRVSSAAGNLVL 201

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK------------------KVMNLLN 189
            G V + Q +Q+A+ ++  +       Q  +S++                   +V+N++ 
Sbjct: 202 AGRVSSGQAAQQAMSIAGAYAGAQPTQQDQSSTASFGNGGSISQQSSSVSKGSEVINMMT 261

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +    QV L+V +AEV + +L Q+        +  G   S+        ++         
Sbjct: 262 VDSPQQVMLEVKVAEVSKTLLNQL----GAAVNIQGGFGSWTGALVSSLLAGVSSGVAVS 317

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-TGATSVT 308
             +   F   + A +  +  + LAEP L  +SGQ ASF +GG+       S+ TG +++T
Sbjct: 318 KANNRPFNIAVDAQKSDSLGKILAEPNLVTLSGQEASFLAGGRVFIPVPQSNGTGGSTIT 377

Query: 309 --THDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMPSYRVRKAD 357
               ++GV L FTPTVL+  R+ L++  EVS         +     +   +P    R+A 
Sbjct: 378 LQEEEFGVGLKFTPTVLAGSRVNLKVAPEVSELSPTGVTVQATGTSSTAILPLITTRRAS 437

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTV++  G +  + GL++++I    + +P + ++P+LGALFR++ F ++ TE+    T  
Sbjct: 438 TTVQMNDGESFAIGGLIQNNITGALKALPGIGEVPVLGALFRSTSFQQDRTELIFIVTVH 497

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           LVKP+   D   P D ++   D   +    +         +  +
Sbjct: 498 LVKPLPPGDYPLPTDSFTGVSDGTVYATGNMEGRRPTASPNAPQ 541


>gi|330953268|gb|EGH53528.1| type III secretion component [Pseudomonas syringae Cit 7]
          Length = 438

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 126/413 (30%), Positives = 201/413 (48%), Gaps = 18/413 (4%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
            N   +  G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FGK  GQ
Sbjct: 24  ANAETIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKTAGQ 83

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            ++I +  +G++   L + +    A +   L+     S  R+      V+  G V+ + +
Sbjct: 84  TSLIALDSEGRETATLSLAVSSGTAAVSRPLKALHPQSQARINASGSRVIASGAVQDVGE 143

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +     L    LS  G+N       +  +N    AG  QV ++V  AEV R  L + G  
Sbjct: 144 ATDLNAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVN 193

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---VLDRFSFETVLHALERATAIRTLA 273
            +   ++   S            +  G  +V          + + +L AL+    +  LA
Sbjct: 194 WNALFNNGTFSFGLLTGGSLAADAASGASNVISAGLTSGNVNIDAMLEALQNNGVLEVLA 253

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           EP +TA++GQ+ASF +GG+     V  +     +    YGV L F+PT+L  GRI L+++
Sbjct: 254 EPNITAMTGQTASFLAGGEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVR 312

Query: 334 TEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            EVS       + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L 
Sbjct: 313 PEVSSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLG 372

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
            +PILG+LFR+ RF R ETE+ I  TP+LV+PV  R  + P D       A A
Sbjct: 373 DMPILGSLFRSKRFQRNETELVILITPYLVEPVKERVAATPLDKQRAASTAAA 425


>gi|71733713|ref|YP_274717.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71554266|gb|AAZ33477.1| type III secretion component, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 437

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 127/409 (31%), Positives = 200/409 (48%), Gaps = 18/409 (4%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           ++  G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FGK  GQ ++I
Sbjct: 27  NIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLI 86

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +  DG++   L + +    A +   L+     S  R+      V+  G V+ + ++   
Sbjct: 87  ALDSDGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDL 146

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI- 219
             L    LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   +  
Sbjct: 147 NAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNAL 196

Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
              G+ S    +  A             S        + + +L AL+    +  LAEP +
Sbjct: 197 FNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNI 256

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TA++GQ+ASF +GG+     V  +     +    YGV L F+PT+L  GRI L+++ EVS
Sbjct: 257 TAMTGQTASFLAGGEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVS 315

Query: 338 ----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                  + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PI
Sbjct: 316 SLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPI 375

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           LG LFR+ RF R ETE+ I  TP+LV+PV  R ++ P D       A A
Sbjct: 376 LGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 424


>gi|309780760|ref|ZP_07675501.1| type II and III secretion system protein:Transport-associated
           [Ralstonia sp. 5_7_47FAA]
 gi|308920442|gb|EFP66098.1| type II and III secretion system protein:Transport-associated
           [Ralstonia sp. 5_7_47FAA]
          Length = 603

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 112/452 (24%), Positives = 215/452 (47%), Gaps = 40/452 (8%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           +    ++++ + K  ++Q+P  V+   V +P     ++ SP+T+Y+ G  VG  N+I+ G
Sbjct: 92  MRSHSEVTVPVGKSTMVQLPEPVRSRTVGNPNVVQAMLVSPQTLYVLGLEVGSTNMIVQG 151

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             G   + +D+ +  D   L+ TLR+ + ++ N++V   +D++VL G V     +Q+ V+
Sbjct: 152 RSGSCSV-VDVAVGADPGGLQSTLRKLMPEARNVQVSAAADSLVLGGSVSDSVQAQKVVD 210

Query: 163 LSETFLSQSGRNQ--------------------YANSSSKKVMNLLNIAGEDQVTLKVTI 202
           ++  F+ +  R                       A   S +++N++ +    QV L+V +
Sbjct: 211 IANAFVMRRTRGPNEGDQNATGQGGQQLHTAGPGAPLRSPRIINMMTVEAPQQVMLEVKV 270

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
           AEV + ++ Q+        +++G   S++      F+S   D       +    +  L A
Sbjct: 271 AEVSKTLIDQM----GAAFNANGAFGSWSFGAIANFLSGSSDIVNFSKANHLPLKFALDA 326

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHD--YGVVLHF 318
            +    ++ LAEP+L AISGQ ASF +GG+        +   G  ++   +  +GV L F
Sbjct: 327 QKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVAQGAAANGVATIVLQEETFGVGLRF 386

Query: 319 TPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           TPTV+  GRI L++  EVSE              N   +P    R+A TT+++  G +  
Sbjct: 387 TPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSILPLITTRRASTTLQVHDGQSFA 446

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + GL+K++I    + +P + ++PI+G+L R++ F +++TE+    TP LVKP+       
Sbjct: 447 IGGLIKNNITGSLKALPGIGELPIIGSLARSTSFQQDQTELLFVVTPRLVKPL-PAQYPL 505

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           P D +   +  + +    +        +    
Sbjct: 506 PTDSFGTINRGELYLNGNMEGHVQAPASQPTA 537


>gi|289624387|ref|ZP_06457341.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646614|ref|ZP_06477957.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868629|gb|EGH03338.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 429

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 126/409 (30%), Positives = 200/409 (48%), Gaps = 18/409 (4%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           ++  G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FGK  GQ ++I
Sbjct: 19  NIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLI 78

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +  +G++   L + +    A +   L+     S  R+      V+  G V+ + ++   
Sbjct: 79  ALDSEGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDL 138

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI- 219
             L    LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   +  
Sbjct: 139 NAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNAL 188

Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
              G+ S    +  A             S        + + +L AL+    +  LAEP +
Sbjct: 189 FNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNI 248

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TA++GQ+ASF +GG+     V  +     +    YGV L F+PT+L  GRI L+++ EVS
Sbjct: 249 TAMTGQTASFLAGGEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVS 307

Query: 338 ----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                  + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PI
Sbjct: 308 SLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPI 367

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           LG LFR+ RF R ETE+ I  TP+LV+PV  R ++ P D       A A
Sbjct: 368 LGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 416


>gi|241662165|ref|YP_002980525.1| type II and III secretion system protein [Ralstonia pickettii 12D]
 gi|240864192|gb|ACS61853.1| type II and III secretion system protein [Ralstonia pickettii 12D]
          Length = 603

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 117/472 (24%), Positives = 220/472 (46%), Gaps = 43/472 (9%)

Query: 27  PPIKEANAAVINISDVEIGKGK---KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
           P   EAN           G  +   ++++ + K  ++Q+P  V+   V +P     ++ S
Sbjct: 72  PATAEANRDSAGKGPNCTGPMRSHSEVTVPVGKSTMVQLPEPVRSRTVGNPNVVQAMLVS 131

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVS 142
           P+T+Y+ G  VG  N+I+ G  G   + +D+ +  D   L+ TLR+ + ++ N++V   +
Sbjct: 132 PQTLYVLGLEVGSTNMIVQGRSGSCSV-VDVAVGADPGGLQSTLRKLMPEARNVQVSAAA 190

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ--------------------YANSSSK 182
           D++VL G V     +Q+ V+++  F+ +  R                       A   S 
Sbjct: 191 DSLVLGGSVSDSVQAQKVVDIANAFVMRRTRGPNEGEQNATGQGGQQLHTAGPGAPLRSP 250

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++N++ +    QV L+V +AEV + ++ Q+        +++G   S++      F+S  
Sbjct: 251 RIINMMTVEAPQQVMLEVKVAEVSKTLIDQM----GAAFNANGAFGSWSFGAIANFLSGS 306

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS- 301
            D       +    +  L A +    ++ LAEP+L AISGQ ASF +GG+        + 
Sbjct: 307 SDIVNFSKANHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVAQGAA 366

Query: 302 -TGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMP 349
             G  ++   +  +GV L FTPTV+  GRI L++  EVSE              N   +P
Sbjct: 367 ANGVATIVLQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSILP 426

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R+A TT+++  G +  + GL+K++I    + +P + ++PI+G+L R++ F +++TE
Sbjct: 427 LITTRRASTTLQVHDGQSFAIGGLIKNNITGSLKALPGIGELPIIGSLARSTSFQQDQTE 486

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           +    TP LVKP+       P D +   +  + +    +        +    
Sbjct: 487 LLFVVTPRLVKPL-PAQYPLPTDSFGTINRGELYLNGNMEGHVQAPASQPTA 537


>gi|227819321|ref|YP_002823292.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234]
 gi|227338320|gb|ACP22539.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234]
          Length = 496

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 115/448 (25%), Positives = 209/448 (46%), Gaps = 34/448 (7%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
            G  +++++  N  I ++      D+++      DVV  S +++++ GK  G  N+ +  
Sbjct: 46  TGSVQQVTLAPNDTITVRTGKPFGDLVIGSAEMIDVVPLSDQSLFIRGKQTGATNISVYD 105

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
            +   +  +D+ +  D + +   +R     + +RV   +D + L G VR   + QR +E+
Sbjct: 106 DNKALVGVIDVRVAADFSEVASAIRSTAPSAQVRVFNSNDRIRLTGTVRDAVELQRVMEI 165

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           ++++            S++ V+N L +A   QV L+V + E  R   + +G   S  G +
Sbjct: 166 AQSY------------SAEPVLNQLRVAESQQVMLEVRVIEASRQTGRDLGIGWSGQGRN 213

Query: 224 S----GPSKSFAADFGGKFVSEGGDFSVKGV--------------LDRFSFETVLHALER 265
                  S+    D  G      GD +                  +     + V++ALE+
Sbjct: 214 GIGKATTSQGITVDDDGNLARTLGDAAGAATGMQPFGQLIAKVLEISGGQIDIVINALEQ 273

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVL 323
              +R LA+P L A+SG++ASF +GG+   +    + +T AT      +GV L F+P VL
Sbjct: 274 KGLVRRLAQPNLIAMSGETASFHAGGEVPIQSTVANGATLATETDYRPFGVRLTFSPVVL 333

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             G I L+I+ EVSE    ++    P +  R A TTV L  G +  +AGLL+    +  +
Sbjct: 334 DGGLISLKIEPEVSEIDPSISVNGNPGFISRAASTTVALRDGQSFAMAGLLQSVNAKDVQ 393

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKA 442
            +P L ++P++GALFR++ F + E+++ I  TP +V+P     DL  P +     +D + 
Sbjct: 394 QLPWLGQVPVIGALFRSTSFLKRESDLVIVVTPHIVRPSKPGEDLYSPLEQTRSSNDVEL 453

Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIG 470
           F    + ++          G+  KG  G
Sbjct: 454 FALG-ILEVDKDMLRRFRNGEGVKGPYG 480


>gi|320324504|gb|EFW80581.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328376|gb|EFW84379.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 429

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 126/409 (30%), Positives = 200/409 (48%), Gaps = 18/409 (4%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           ++  G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FG+  GQ ++I
Sbjct: 19  NIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGQAAGQTSLI 78

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +  DG++   L + +    A +   L+     S  R+      V+  G V+ + ++   
Sbjct: 79  ALDSDGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDL 138

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI- 219
             L    LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   +  
Sbjct: 139 NAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNAL 188

Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
              G+ S    +  A             S        + + +L AL+    +  LAEP +
Sbjct: 189 FNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNI 248

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TA++GQ+ASF +GG+     V  +     +    YGV L F+PT+L  GRI L+++ EVS
Sbjct: 249 TAMTGQTASFLAGGEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVS 307

Query: 338 ----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                  + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PI
Sbjct: 308 SLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQHESSQDMDKVPMLGDMPI 367

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           LG LFR+ RF R ETE+ I  TP+LV+PV  R ++ P D       A A
Sbjct: 368 LGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 416


>gi|300692331|ref|YP_003753326.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07]
 gi|299079391|emb|CBJ52062.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07]
          Length = 644

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 115/445 (25%), Positives = 210/445 (47%), Gaps = 41/445 (9%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            +    ++++ + K  ++Q+P  V++  V +P     ++ SP+T+YL G+ VG  N+I+ 
Sbjct: 120 AMRAHSEVTVPVGKSTMVQLPEPVRNRTVGNPNVVQAMLVSPQTLYLLGQEVGTTNMIVQ 179

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L  TL   + D+  +RV   +D++VL G V     +Q+ V
Sbjct: 180 GRSGSCSV-IDVAVGADPGGLLATLHELVPDAKGVRVSAAADSLVLSGSVSDSVQAQKVV 238

Query: 162 ELSETFLSQSGRNQ----------------------YANSSSKKVMNLLNIAGEDQVTLK 199
           +++  F+++  R                         A   S +++N++ +    QV L+
Sbjct: 239 DIANAFVTRQTRGPSQHDQGGGQGANSATQGAITAPGAQPRSPRIINMMAVEAPQQVMLE 298

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           V +AEV + ++ Q+G   ++  +    S    A+    F+S   D       +    +  
Sbjct: 299 VKVAEVSKTLIDQMGAAFNLNSAFGSWSFGAIAN----FLSSSQDLVSFSKANNLPLKFA 354

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVL 316
           L A      ++ LAEP+L AISGQ ASF +GG+       S TG  +        +GV L
Sbjct: 355 LDAQRGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVPQSFTGGVTTIVLQEETFGVGL 414

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIG--------VNAGDM-PSYRVRKADTTVELPSGGT 367
            FTPTV+  GRI L++  EVSE             N   + P    R+A TT+++  G +
Sbjct: 415 RFTPTVMENGRINLKVAPEVSELSPTGVAVTAANTNGTTILPLITTRRASTTLQVRDGQS 474

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
             + GL+K ++    + +P + ++P++G+L R++ F R++TE+    TP LVKP+     
Sbjct: 475 FAIGGLIKSNVTGSLKALPGIGELPVIGSLARSTSFQRDQTELLFVVTPRLVKPL-PAQY 533

Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIY 452
             P D +   +  + +    +    
Sbjct: 534 PMPTDSFGPINRGELYLNGNMEGRR 558


>gi|323529413|ref|YP_004231565.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
 gi|323386415|gb|ADX58505.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
          Length = 616

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 119/457 (26%), Positives = 214/457 (46%), Gaps = 27/457 (5%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
              S NP+ A+     ++ AA          +   + + + K  ++Q    V++  + +P
Sbjct: 56  MTISMNPAPAQPANTMQSAAARGPACTRTQSEQSTVVVPVGKSTLMQTAEPVRNRTLGNP 115

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
             A   + SP+T+Y+ G  VG  N+I+ G  G     +++++  D   L+ +L + + D 
Sbjct: 116 LVAQATMVSPQTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADSGGLQTSLSQLMPDE 174

Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS--------GRNQYANSSSKKVM 185
             IRV  V+  +VL G V + Q + +A E+++ +   +          N  A + +  V+
Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARSTLPAANGGTNGNGGAPAKAATVL 234

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           N++++    QV L+V +AEV + +L Q+        +  G   S++       +S     
Sbjct: 235 NMMSVDSPQQVMLEVKVAEVSKTVLNQL----GSAMNIQGGFGSWSGALISSLLSGVQSI 290

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           +     +   F   +        ++ LAEP L  +SGQ A+F +GG+       S+    
Sbjct: 291 AAVSKANNRPFNVAVDGQHGDDLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGV 350

Query: 306 SV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRV 353
           S       ++GV L FTPTVL+ GRI L++  EVSE              N   +P    
Sbjct: 351 STIILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITT 410

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+A TTV++  G T  + GL+K +     + IP + ++P+LGALFR++ + ++ TE+   
Sbjct: 411 RRASTTVQMNDGETFAIGGLIKSNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELIFI 470

Query: 414 ATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVN 449
            TP LVKP+ A+ +L  P D     ++A  +    + 
Sbjct: 471 ITPHLVKPLQAVANLPLPTDRLKTPNEADVYLLGNME 507


>gi|298487093|ref|ZP_07005143.1| type II/III secretion system protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158336|gb|EFH99406.1| type II/III secretion system protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 437

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 127/409 (31%), Positives = 201/409 (49%), Gaps = 18/409 (4%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           ++  G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FGK  GQ ++I
Sbjct: 27  NIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLI 86

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +G +G++   L + +    A +   L+     S  R+      V+  G V+ + ++   
Sbjct: 87  ALGSEGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDL 146

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI- 219
             L    LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   +  
Sbjct: 147 NAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNAL 196

Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
              G+ S    +  A             S        + + +L AL+    +  LAEP +
Sbjct: 197 FNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNI 256

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TA++GQ+ASF +GG+     V  +     +    YGV L F+PT+L  GRI L+++ EVS
Sbjct: 257 TAMTGQTASFLAGGEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVS 315

Query: 338 ----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                  + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PI
Sbjct: 316 SLMSTITLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPI 375

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           LG LFR+ RF R ETE+ I  TP+LV+PV  R ++ P D       A A
Sbjct: 376 LGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 424


>gi|284048526|ref|YP_003398865.1| type II and III secretion system protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952747|gb|ADB47550.1| type II and III secretion system protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 590

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/414 (23%), Positives = 181/414 (43%), Gaps = 34/414 (8%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           AA++ ++   +     +S+ +N    ++    +  + V +P  ADV + S     L GK 
Sbjct: 14  AAILGMTGQALAAT-TLSVAVNGSRYMEASG-ITRLAVGNPEIADVRLLSGNDFLLVGKK 71

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G   +++   +G++    ++ +    A     ++  I    ++V+M++  V+L G V+ 
Sbjct: 72  PGSTTLLVWSDNGRE--EYNVFVSGSDAGTAQAIQEAIGYPEVQVQMMNGKVLLRGRVQN 129

Query: 154 IQDSQRAVELSETFLS-------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
             +   A+++++ +L              + G      ++   ++++L++    QV L  
Sbjct: 130 QYEHDSAIKVAQMYLGSGGGTTSTAQAGGKEGTAAQGGTTDSNIIDMLDMTEPTQVRLVA 189

Query: 201 TIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADF----------GGKFVSEGGDFSVKG 249
            I E+     K +G Q  S T   +    S + D           G  F  + G F   G
Sbjct: 190 QIIEINTSAEKDLGIQYWSPTLGDNTTGNSNSTDITRGTPGLFYAGENFYKQRGSFGWFG 249

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                +    L AL  +   R L+ P++T +SGQ A    GG+    T S+  G  ++  
Sbjct: 250 SH-LSNLNASLQALVTSGKARILSRPSITTMSGQKAKILIGGRIPIPT-SAGDGQIAIDW 307

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSG 365
            DYGV L   P V +  +I  ++  EVS    G     N   +P+   R+A+  + + SG
Sbjct: 308 RDYGVKLDIEPVVDADNKITSKVHAEVSTLDYGHSVKENDFSIPAIASREAEAMINVRSG 367

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T+ + GLL  +  +    IPLL  IPI+G  FR++   R+  E+ I  TP LV
Sbjct: 368 MTMAIGGLLNSEDSKSVSKIPLLGDIPIIGQFFRHTSTTRDNRELLILITPLLV 421


>gi|297581608|ref|ZP_06943530.1| flp pilus assembly protein [Vibrio cholerae RC385]
 gi|297534015|gb|EFH72854.1| flp pilus assembly protein [Vibrio cholerae RC385]
          Length = 469

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 115/457 (25%), Positives = 204/457 (44%), Gaps = 37/457 (8%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
               + + +N+  I+ V  D+QDV VSDP    V   S R + + GK++G  +++++G +
Sbjct: 21  AESPLVLHVNQNQIITVDGDIQDVFVSDPKIVVVHAPSSRHVMVSGKDIGSTDLLIMGEN 80

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
            + + +  + +  D++ LE  ++    ++NIR       +V+ G V     +   + ++ 
Sbjct: 81  AQTLAHYKLNVNADLSELERAVQHAFPEANIRFAYSKGAIVVMGEVANPLQAHEVLSMAS 140

Query: 166 TFL-----------------------SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
            F                        S + +        K V+N L   G  QV + + I
Sbjct: 141 GFARGLQKPEQQTLDMPANSASSGRDSGAAKPGGGIGDYKFVVNQLKTQGSAQVNISIRI 200

Query: 203 AEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
            E+ R   +Q+G + S  G+   G   +     G    ++    ++     +     ++ 
Sbjct: 201 VEMERATSEQLGLRWSSIGNMRWGTWDTLQTALGATPGNKFPTNTLPSGNGQHGLNVIID 260

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL   + +  LAEP LTA SG++A+F SGG+  +   +   G  S+    +G+ L  TPT
Sbjct: 261 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVDNGDDG-VSIEFKKFGIALEVTPT 319

Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VLS  +I L +  EVS    E  + +   ++P    R+A TT+EL  G +  LAGL++  
Sbjct: 320 VLSNRQISLTVAPEVSTLSRENSVSIAGVEVPGIETRRATTTIELADGQSFALAGLVRTY 379

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSV 436
                E +P L +IPIL   F  + F   E+E+ I AT  LV+P +   +L+ P D Y  
Sbjct: 380 QDHKVEALPFLGEIPILAPFFSTNSFKNSESELVIIATARLVEPSSDPAELTTPLDRYRP 439

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
               +  F +++ + +        E     G  G+ Y
Sbjct: 440 ASRFERLFLHKMGETHD-------ESTRLFGHYGYNY 469


>gi|145219384|ref|YP_001130093.1| type II and III secretion system protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205548|gb|ABP36591.1| type II and III secretion system protein [Chlorobium
           phaeovibrioides DSM 265]
          Length = 472

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 117/443 (26%), Positives = 197/443 (44%), Gaps = 48/443 (10%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           + + +  + ++   ++ V V +P  AD ++ +   +YL GK  G  N+IL    GK    
Sbjct: 39  VPVGESRVYRLEQPIKRVAVGNPEVADYIMLNSSELYLLGKKTGATNLILWNQQGKFTST 98

Query: 112 LDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           L + + R+   ++  LR  + +   I++    + +VL G V     ++ A  L + +L  
Sbjct: 99  L-LQVSRNSYPIKQLLRTALPEESEIQIFSSGEALVLAGSVSNRLAAETAYRLVKAYLGG 157

Query: 171 SGRN----------------------------------QYANSSSKKVMNLLNIAGEDQV 196
              +                                     +++   V+NLL +    QV
Sbjct: 158 KVPDVNPESSLAKTTSASAASASIAGTTNGSSAVPVQASTQSTAPAGVVNLLTVRDTQQV 217

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            L+V IAEV +  L+ +G            + +        FVS      +         
Sbjct: 218 RLEVRIAEVSKTYLQTLGIGWQQ------GTGNTQGSLMTGFVSNATLNVLLQTKSNPGN 271

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
           E  + A  +   I+ LAEPTL A+SG+   F  GG+    TV+S+ GA       YGV L
Sbjct: 272 ELSMDAERKEGVIKILAEPTLVAMSGEEGYFLVGGKVFTPTVTSN-GAIDYVERTYGVGL 330

Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            FTPTVL  GRI L++  EVSEP    V    +  +P ++   A +TV++  G  +V+ G
Sbjct: 331 RFTPTVLDSGRISLKVAPEVSEPLKEAVTAGTSTPLPGFKTSFASSTVQMNEGENLVIGG 390

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           LL+D++ ++   +PLLS IPILG+LFR++  + E TE+ +   P L+K         P D
Sbjct: 391 LLRDNLTEVVRAVPLLSDIPILGSLFRHTEKSSETTELMVIIRPTLIKASTTAQ-ELPTD 449

Query: 433 HYSVEDDAKAFFFNRVNKIYGPK 455
            ++    ++ F   ++    G K
Sbjct: 450 KFAPPSSSELFLEGKLQGSRGSK 472


>gi|85373131|ref|YP_457193.1| type II secretion system protein [Erythrobacter litoralis HTCC2594]
 gi|84786214|gb|ABC62396.1| type II secretion system protein [Erythrobacter litoralis HTCC2594]
          Length = 574

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 138/520 (26%), Positives = 232/520 (44%), Gaps = 72/520 (13%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           + ++R       +   ++ P  A    +  A + V    DV         + + +  ++ 
Sbjct: 25  KTMKRRLIAKALVASLAALPVAAGPAQVAHAQSIVKPSQDVV--------LSIGRGELIS 76

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           VP  + DV +++   ADV + S R +Y+FGK+ G+  +      G  +   ++ +  +I 
Sbjct: 77  VPGAMADVFIANDAVADVQIKSQRQLYVFGKSGGETTIYASNSAGDVIWAANVRVANNID 136

Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
            L+  L   + ++ I    +  +TV+L G V   +D+  A  L   FL            
Sbjct: 137 SLDQMLALAMPEAKIATATMGTNTVLLTGTVAAPEDAAEAERLVTAFLGDGA-------- 188

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--------------- 225
              V++ L +A   QV L+V IAEV R ++++IG   +   ++ G               
Sbjct: 189 --NVISRLKMATPLQVNLQVRIAEVSRSLVREIGSNLTTRDTTDGFLFGVNRGRNFGSIT 246

Query: 226 -----------PSKSFAADFG----------GKFVSEGGDF------------SVKGVLD 252
                       S  F    G          G+FV  G +F            +  G L 
Sbjct: 247 DIDTSGFPQLDASAQFGLPPGSLSLPFNPATGQFVVGGANFPVASNNPGQTALNFAGRLF 306

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
                +     ER   I TL+ P LTA+SG++A+F +GG+     +S   G TS+   ++
Sbjct: 307 GLDIASAFDVGERLGLITTLSNPNLTALSGETATFLAGGEFPIP-ISQGLGTTSIEYRNF 365

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTI 368
           GV L ++PTVL+ GRI +R++ EVSE      I +N   +P+   R+A+TTVEL SG + 
Sbjct: 366 GVSLAYSPTVLANGRISIRVRPEVSELSSQGAITLNGFQIPALTTRRAETTVELGSGQSF 425

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           ++AGL+ +  Q   +  P L  +PI+G LFR++ F + ETE+ I  TP+LVKPV   D+ 
Sbjct: 426 MIAGLMSNSSQNTVDKAPGLGDVPIIGNLFRSTSFRKGETELVIVVTPYLVKPVDGTDIK 485

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
            P D Y   ++ +       N      +  +   Q+  G 
Sbjct: 486 LPTDGYQTPNELQRTLGFLENDGKTGGDRPKPTAQDRDGP 525


>gi|269105132|ref|ZP_06157826.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160582|gb|EEZ39081.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 442

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 113/415 (27%), Positives = 189/415 (45%), Gaps = 36/415 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           +I+I  V       +++       + V  ++  V +SDP  AD  V     + +FGK +G
Sbjct: 13  IISIYSVIASAESLLNLSEGDAATVPVDTEIDSVFISDPAIADYQVIDKNKVVIFGKKIG 72

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             N+ +  ++G ++ N  +++ + +  ++  +     D+NI +    + VVL G V   Q
Sbjct: 73  HTNLFIFDNEGNELANRKVIVNKSLREIKQYISIKFPDANIDIFNFGEQVVLSGTVSNEQ 132

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKV 200
                  +  T LS+   +   N  +                 ++N + +    QV +K+
Sbjct: 133 VKDEINNIVGTLLSKKSNDFNFNLETDDQDYEVQFMKQKHFTGLVNNIEVLATRQVNVKL 192

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           +IAEV    L+QIG Q++  G + G   +   +F                       +V+
Sbjct: 193 SIAEVSHSFLEQIGVQYNSIGHAPGVFVNPLTNFSAS-----------------DILSVI 235

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            A+      + LAEP L+ ISG+SASF  GG+    T+      T+VT  ++GV L    
Sbjct: 236 TAIGNDGIGQVLAEPNLSVISGESASFLVGGELPVVTIV--DNGTNVTYKEFGVKLELLA 293

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            V    +I L +  EVS      +    D+P+ + R+A TTVEL  G + VL GLL  + 
Sbjct: 294 KVRKDDKITLSLMPEVSSLDTQYSNDKYDLPALKTRRARTTVELGDGQSFVLGGLLSTED 353

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           ++    +P +  IP+LGALFRNSR  R +TE+ I AT  LV+P+    +  P   
Sbjct: 354 KERLNKVPYIGDIPVLGALFRNSRTERNKTELIIVATVNLVQPIHPSQVQLPTIR 408


>gi|312621080|ref|YP_003993808.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
           pilus assembly [Photobacterium damselae subsp. damselae]
 gi|311872801|emb|CBX86892.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Photobacterium damselae subsp. damselae]
          Length = 438

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 113/415 (27%), Positives = 189/415 (45%), Gaps = 36/415 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           +I+I  V       +++       + V  ++  V +SDP  AD  V     + +FGK +G
Sbjct: 9   IISIYSVIASAESLLNLSEGDAATVPVDTEIDSVFISDPAIADYQVIDKNKVVIFGKKIG 68

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             N+ +  ++G ++ N  +++ + +  ++  +     D+NI +    + VVL G V   Q
Sbjct: 69  HTNLFIFDNEGNELANRKVIVNKSLREIKQYISIKFPDANIDIFNFGEQVVLSGTVSNEQ 128

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKV 200
                  +  T LS+   +   N  +                 ++N + +    QV +K+
Sbjct: 129 VKDEINNIVGTLLSKKSNDFNFNLETDDQDYEVQFMKQKHFTGLVNNIEVLATRQVNVKL 188

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           +IAEV    L+QIG Q++  G + G   +   +F                       +V+
Sbjct: 189 SIAEVSHSFLEQIGVQYNSIGHAPGVFVNPLTNFSAS-----------------DILSVI 231

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            A+      + LAEP L+ ISG+SASF  GG+    T+      T+VT  ++GV L    
Sbjct: 232 TAIGNDGIGQVLAEPNLSVISGESASFLVGGELPVVTIV--DNGTNVTYKEFGVKLELLA 289

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            V    +I L +  EVS      +    D+P+ + R+A TTVEL  G + VL GLL  + 
Sbjct: 290 KVRKDDKITLSLMPEVSSLDTQYSNDKYDLPALKTRRARTTVELGDGQSFVLGGLLSTED 349

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           ++    +P +  IP+LGALFRNSR  R +TE+ I AT  LV+P+    +  P   
Sbjct: 350 KERLNKVPYIGDIPVLGALFRNSRTERNKTELIIVATVNLVQPIHPSQVQLPTIR 404


>gi|123443821|ref|YP_001007792.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090782|emb|CAL13664.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 453

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 114/418 (27%), Positives = 202/418 (48%), Gaps = 33/418 (7%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
                + + +   +  +++   ++  V VS    AD  +    ++ ++ K  G A  IL 
Sbjct: 28  NRANAEPVYLSTGESYMIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILF 87

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             +   +    IL++  I      +R    +S+I +  + D+ +L G V T +  +    
Sbjct: 88  NQNHHPIKKSAILVDNTITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIAS 147

Query: 163 LSETFLSQS------------GRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +               G +QY NS    +V+N + + G +QV +K+TIAEV +D 
Sbjct: 148 IIGEAIGSEKTIASNSKKDSDGNSQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDF 207

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            + IG   S  G+ SG  + F  +   KF ++G                ++HA+   +  
Sbjct: 208 SENIGMDWSTIGNFSGSFQFFKPNGLNKFNAKG-------------ISALVHAINDDSIA 254

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           R LAEP L+ +SG+SASF  GG+     V+++  +T +T   +G+ L+    V +  RI 
Sbjct: 255 RVLAEPNLSVLSGESASFLVGGELP--LVNTTANSTVITYKQFGIKLNIGAKVNAKKRIR 312

Query: 330 LRIQTEVSEP--VIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           +++  EVS    V  ++ GD  PS+R RKA TT+EL  G + +L GL+    ++  + IP
Sbjct: 313 IKLDEEVSSVDKVFNIDGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIP 372

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
            +  IPILGA FRN+   + +TE+ + AT  LV+PV+ +++  P  ++      + FF
Sbjct: 373 FIGDIPILGAFFRNAETRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFF 428


>gi|149909547|ref|ZP_01898201.1| general secretion pathway protein D [Moritella sp. PE36]
 gi|149807452|gb|EDM67403.1| general secretion pathway protein D [Moritella sp. PE36]
          Length = 432

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 115/405 (28%), Positives = 196/405 (48%), Gaps = 38/405 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             K +++   +   ++   ++  V ++DP  AD  V     + +FGK +G  ++I+   +
Sbjct: 11  AQKIVNLSEGEAKTIKSIKEIASVFIADPEIADYQVIDANKVVVFGKKIGSTSIIVFDEN 70

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G  + N  ++I + + H++  ++    ++++ +  V D VVL G+V T Q+      +  
Sbjct: 71  GDTITNNKLVINKSLVHIQQQIQLKYPNADVTIYNVGDQVVLSGIVATEQEKDDINIIVG 130

Query: 166 TFLSQSGRN---QYANSSSKK--------------VMNLLNIAGEDQVTLKVTIAEVRRD 208
             L++   +   Q+ ++ +                ++N + +A   QV +K++IAEV   
Sbjct: 131 ELLNKKSDDYIIQWESTGTDTKYEMEFMKRRHFAGIVNNIEVAAVKQVNVKLSIAEVSHS 190

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L+  G ++S  G +SG   +    F                       +V+ A+   + 
Sbjct: 191 FLENFGIEYSSIGQTSGTFVNLVTKFSAS-----------------DIASVITAIADDSV 233

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + LAEP L+ ISG+SASF  GG+    TV    G T+V   +YGV L     VL   +I
Sbjct: 234 GQILAEPNLSVISGESASFLVGGELPVVTVV--DGTTNVLYKEYGVRLSLMAKVLRDDKI 291

Query: 329 GLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            L +  EVS      ++G  ++P+ + R+A TTVEL  G + VLAGLL  +  +  + IP
Sbjct: 292 ILSLSPEVSTLDNQYSSGTYNLPALKTRRARTTVELGDGQSFVLAGLLNTEDVESIKKIP 351

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
            L  IPILGALFR+S   R +TE+ I AT  LVKP+    +  P 
Sbjct: 352 FLGDIPILGALFRSSSTQRNKTELIIVATVNLVKPIHASQVQLPT 396


>gi|326797327|ref|YP_004315147.1| type II and III secretion system protein [Marinomonas mediterranea
           MMB-1]
 gi|326548091|gb|ADZ93311.1| type II and III secretion system protein [Marinomonas mediterranea
           MMB-1]
          Length = 464

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 122/454 (26%), Positives = 217/454 (47%), Gaps = 22/454 (4%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAK--LPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           + +  F T+ ++    S  + A   +    + N+ +      E+    ++ + +N+  +L
Sbjct: 2   FSKYYFLTLFAVCSVQSTLAFATYDVDQPADNNSRIAESRFEEVAVSGQVKLHVNQGTLL 61

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P     VL+++P  A   + SP  +++F K  G   +  +  +   ++ + +    D+
Sbjct: 62  NLPKAASKVLIANPEVASFQMPSPDNVFVFAKAPGDTTLYALDENNDVIIAVTLTSGYDL 121

Query: 121 AHLEMTLRRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQRAVELSETFLSQS------GR 173
             L   + + +  + ++V   +D  +++ G V+T Q +++ +   E++L  S      G 
Sbjct: 122 EGLTRQVAKEVPGTEVQVGPATDKGLIVRGTVQTPQQAKQVISSVESYLGASTSANGRGG 181

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSK 228
               ++ S +++N L +A   QV + V I EV R +   +GF       + TG     S 
Sbjct: 182 RGGQSNQSLRIVNQLKVALSSQVNISVRIVEVSRSLTHALGFSWDTLFDNNTGFIRNGSS 241

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
            F A  G    S      + G +       VL AL        LAEP LTA+SG++A F 
Sbjct: 242 LFDASTGVFDGSGISLGVLGGTIG--DVGGVLSALSNDGMASILAEPNLTAMSGETAGFA 299

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VN 344
            GG+        +  + ++    YGV++  TPT+LSP RI L I  EVS+        +N
Sbjct: 300 VGGEVPIVI--QTNNSVTIEYKQYGVIMRMTPTLLSPNRISLHIAPEVSDLSDDGSVVLN 357

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+++VR+A+TTVEL SG +  LAG+L+  + Q   G+P L  IP+LG +F      
Sbjct: 358 DTTIPAFKVRRANTTVELASGQSFALAGMLRSSVSQTVSGVPGLRSIPVLGRMFETEINQ 417

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           +EETE+ I AT ++V+P +  +L  P    S  D
Sbjct: 418 KEETELVIIATAYIVEPTSANNLQSPAQGISTID 451


>gi|261820214|ref|YP_003258320.1| type II and III secretion system protein [Pectobacterium wasabiae
           WPP163]
 gi|261604227|gb|ACX86713.1| type II and III secretion system protein [Pectobacterium wasabiae
           WPP163]
          Length = 475

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 131/448 (29%), Positives = 223/448 (49%), Gaps = 25/448 (5%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L  ++   A LP +  + AA             ++ + +++  +L +      VLV+DP 
Sbjct: 19  LLIASLFNAVLPVMLMSPAATQAAGVSVAPVTDEVHLTVHQGRLLHLDALPDSVLVADPN 78

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
            A   + SP  ++++ KNVG   +  +  +GK +  + ++ E D+  L   ++R    ++
Sbjct: 79  IASFELPSPGNLFVYAKNVGTTTLYAMDENGKVINAIRLVSEHDLKALSERIKREFPGAD 138

Query: 136 IRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ-----------YANSSSKK 183
           I++E  +   V++ G V T QD++R ++  +T+++ S                ++ +S K
Sbjct: 139 IQLEASIPSGVIVRGSVDTPQDAKRVIDSIQTYINASSNGAQGGGGGGDQLPGSSETSGK 198

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAADFGGKFVSEG 242
           V+N L I    Q+ ++V + EV R +  ++GF  + + S+ SG   + +      F +  
Sbjct: 199 VVNQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTAGSGSRLNLFNATT 258

Query: 243 GDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           G F+        +F       +L A+ +      LAEP LTA+SG++A+F +GG+     
Sbjct: 259 GRFANPTDSGFLNFGRSRLGGLLTAMNQQGMATVLAEPNLTAMSGETAAFAAGGEVPIVL 318

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYR 352
           ++    + S+    YGV+L  TPT+LS  RI L I  EVSE      V       +P+  
Sbjct: 319 IT--NNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQLEGGSRIPALT 376

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           VR+ADTTVEL SG +  LAG+L+    Q   G+P LS IP+ G LF +   N EETE+ I
Sbjct: 377 VRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSGIPMFGRLFESESTNHEETELVI 436

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDA 440
            AT ++V+PV   DL  P     + D +
Sbjct: 437 IATAYVVEPVNAGDLQTPGQGIRMLDSS 464


>gi|162147491|ref|YP_001601952.1| type II and III secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545598|ref|YP_002277827.1| type II and III secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786068|emb|CAP55650.1| type II and III secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533275|gb|ACI53212.1| type II and III secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 473

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 139/491 (28%), Positives = 227/491 (46%), Gaps = 38/491 (7%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
           ++ R    M +    S   + A       A +       V  G    + I      ++++
Sbjct: 2   FISRRVLPMAAFAGMSLCLAGADARSTHPAAS-----GSVAHGAHAVLGIEEGAGKLVKL 56

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
                ++ V+DP   +V   SP +M++FG   GQ  VI     G  +    +++    ++
Sbjct: 57  DGIATNIFVADPKVVEVRAASPDSMFVFGVGAGQTTVIATSRSGGVVARYTVVVLPS-SY 115

Query: 123 LEMTLRRFIADSNIRVE---MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
               LRR +   N RV        ++ + G   + + +++A+E +   + + GR      
Sbjct: 116 RASALRRDVGQQNPRVRIGTGADGSIGIEGTETSSESAEQALEGATALVGKGGR------ 169

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
               V +  ++ G  QV LKV I E+ R +++++G +   + ++ G + +          
Sbjct: 170 ----VGDYASVPGSIQVNLKVRIVEMSRSLVRELGVEWQ-SVNALGTAAAIGISTSNPLA 224

Query: 240 SEGGDFSVKGVLDRFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           +   + S    L RFS        ETV+ AL +   I +LAEP LT +SGQ+ASF  GG+
Sbjct: 225 ALTTEQSAFNFLSRFSAAGRPVTVETVIDALSQDGLIHSLAEPNLTTVSGQAASFIVGGE 284

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------ 346
           +    VSS     +V    YG+ L F PTVL+ GRI L ++ EVS               
Sbjct: 285 YPIP-VSSYNNNINVQYKQYGISLAFVPTVLADGRISLHVRPEVSALSTQGAVTLSEANG 343

Query: 347 --DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+  VR+ADTTVEL SG +  +AGL++D       G+P L  IP+LGALF++S F 
Sbjct: 344 NLQIPALTVRRADTTVELGSGQSFAIAGLMQDSTNMQGLGLPFLGDIPVLGALFKSSSFQ 403

Query: 405 REETEIFIAATPFLVKPVAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
           + E+E+ I  TP+LV+PV     L  PDD+++   D    F  R N IY       V  +
Sbjct: 404 KNESELVIVVTPYLVRPVDNESMLHSPDDNWAPPGDLDRIFLMRQN-IYKYAGKKNVARR 462

Query: 464 NYKGAIGFIYK 474
           +     GF+ +
Sbjct: 463 DVNSDAGFMVE 473


>gi|193213115|ref|YP_001999068.1| type II and III secretion system protein [Chlorobaculum parvum NCIB
           8327]
 gi|193086592|gb|ACF11868.1| type II and III secretion system protein [Chlorobaculum parvum NCIB
           8327]
          Length = 472

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 195/454 (42%), Gaps = 53/454 (11%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           I       +   +  + ++   ++ V V +P  AD ++ +P  +YL GK  G  N+I+  
Sbjct: 30  IAAPSTYRVSEGESRVYRMGSPIKRVAVGNPEIADYIILNPTELYLLGKKTGATNLIVWD 89

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
            +G    +  + + R++  ++  +R  + +  +I +      +VL G V     ++ A  
Sbjct: 90  QNGNS-ASTPLQVSRNVEPIKDLIRTVLPNETDIHIYSSGPALVLAGTVSNSLAAETAYR 148

Query: 163 LSETFLS-------------------------------------QSGRNQYANSSSKKVM 185
           L + +L                                        G      S    V+
Sbjct: 149 LVKGYLGGDVPADNPEKTLTNTKPADSYAGTASLSGIVKSASLVAGGPTGAEGSGMSGVV 208

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           NLL +    QV L+V IAEV +  ++ +GF+ +      G   + +      FVS     
Sbjct: 209 NLLKVRDAQQVRLEVHIAEVSKTFMQALGFEWA------GRIGNVSGGLMTGFVSNETIN 262

Query: 246 SVKGVLDRFSFETVLHALER--ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            +  + D  S    + A        I+ LAEPT+ A+SGQ   F  GG+    T++ + G
Sbjct: 263 LL--LKDNTSHSQRIKAENECDNGWIKILAEPTIVAMSGQEGYFLVGGKIYVPTIT-ANG 319

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVE 361
           A       YGV L FTPTVL  GRI L++  EVSEP        G + +++   A TTV+
Sbjct: 320 AVDYQERTYGVGLRFTPTVLDAGRISLKVAPEVSEPPTSAADGTGTLLAFKTSYASTTVQ 379

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +V+ GLLKD I +  + +PLL  IP+LGALFR+++   E TE+ +   P LV+ 
Sbjct: 380 MNEGQNLVIGGLLKDKITETLKAVPLLGDIPLLGALFRHTKIESENTELLVVVRPTLVEA 439

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
                   P D +      + FF  ++      +
Sbjct: 440 SDTP-PELPTDRFIPPTQKELFFDGKLQGSRSGQ 472


>gi|50119734|ref|YP_048901.1| hypothetical protein ECA0789 [Pectobacterium atrosepticum SCRI1043]
 gi|49610260|emb|CAG73703.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 478

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 131/460 (28%), Positives = 229/460 (49%), Gaps = 27/460 (5%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
            Q T   +++  LF++   V     +  A    +     E+ +   + + +++  +LQ+ 
Sbjct: 12  FQGTCKRLLAAGLFNAVLPVTLTTMMLPA--TTMAAGVSEVAETNVVHLTVHQGRLLQLD 69

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
                VLV+DP  A   + SP  ++++ K+VG   +  +  +G  +  + ++ E D+  L
Sbjct: 70  ALPDSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKAL 129

Query: 124 EMTLRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ------- 175
              ++R    ++I++E  +   V++ G V T QD++R ++  + ++S S   Q       
Sbjct: 130 GERMKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASAGGQGGGGGGG 189

Query: 176 ----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSF 230
                ++ SS KV+N L I    Q+ ++V + EV R +  ++GF  + + S+ SG   + 
Sbjct: 190 EKLPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMSAG 249

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSA 285
           +      F +  G F+        +F       +L A+ +      LAEP LTA+SG++A
Sbjct: 250 SGSRLNLFNATTGRFANPTDSGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGETA 309

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PV 340
           +F +GG+     ++    + S+    YGV+L  TPT+LS  RI L I  EVSE      V
Sbjct: 310 AFAAGGEVPIVLIT--NNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSV 367

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                  +P+  VR+ADTTVEL SG +  LAG+L+    Q   G+P LS +P+ G LF +
Sbjct: 368 QLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFES 427

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
              ++EETE+ I AT ++V+PV   DL  P     + D +
Sbjct: 428 ESTSQEETELVIIATAYVVEPVNAGDLQTPGQGVKMLDSS 467


>gi|78186671|ref|YP_374714.1| type II secretion system protein [Chlorobium luteolum DSM 273]
 gi|78166573|gb|ABB23671.1| type II secretion system protein [Chlorobium luteolum DSM 273]
          Length = 486

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 117/455 (25%), Positives = 201/455 (44%), Gaps = 58/455 (12%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           + + +  + ++P  V  V V DP  AD ++ +P  +YL GK  G  N+ +    GK + +
Sbjct: 39  VPVGESRVYRLPQPVTRVAVGDPEVADYIMLNPSEIYLLGKKTGSTNLTVWDRKGK-VSS 97

Query: 112 LDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
             + + R++A ++  LR  +     I++      +VL G       +  A  L   +   
Sbjct: 98  RSLRVSRNVAPIQELLRVVLPGETGIQLYASGHALVLSGSASDAMAADTAYRLVIAYSGG 157

Query: 171 SGRNQYANSS--------------------------------------------SKKVMN 186
           +       S+                                            + +V+N
Sbjct: 158 TVPALNPESALLAGSAGASGSVGAPGISGIHDSAPAAPSALPGAAASRSPAARDTPRVVN 217

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGGKFVSEGGD 244
           LL I    QV L+V IAEV R  ++ +G   +    S+  S    F ++     + + G 
Sbjct: 218 LLKIRDPQQVRLEVRIAEVSRSHIESLGIGWTQGRGSTQGSLMTGFVSNATLDLLLKTGG 277

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                  +R      + A ++   ++ LAEPT+ A+SG+   F  GG+    T+  + G+
Sbjct: 278 MPGSTEGNRL----TVDAEQKKGLVKILAEPTIVAMSGEEGYFLVGGKVYTPTL-GTNGS 332

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTV 360
                  YGV L  TPTVL  GRI L++  EVSEP    V    +  +P++++  A TTV
Sbjct: 333 VDYVERTYGVGLRCTPTVLDSGRISLKVAPEVSEPLKEAVTAGTSTSLPAFKLSYASTTV 392

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++  G  +V+ GLL+D++ ++K  +PLLS IP+LG+LFR++  N+E TE+ +   P LVK
Sbjct: 393 QMQEGENLVIGGLLRDNLTEVKRSVPLLSSIPVLGSLFRHTEMNKETTELMVIVRPTLVK 452

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
                    P D +      + F   +++   G K
Sbjct: 453 AGNP-APELPTDRFVPPAPLELFIEGKLDGSGGAK 486


>gi|251789646|ref|YP_003004367.1| type II and III secretion system protein [Dickeya zeae Ech1591]
 gi|247538267|gb|ACT06888.1| type II and III secretion system protein [Dickeya zeae Ech1591]
          Length = 474

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 135/451 (29%), Positives = 224/451 (49%), Gaps = 34/451 (7%)

Query: 33  NAAVINISDV-EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           +A  + ++ V +I    +I + +N+  +LQ+      VL++DP  A   + SP  +++F 
Sbjct: 27  SATTLPVAAVTQIEATSEIRLNINQGRMLQLDHIPDSVLIADPAIASFELPSPGNVFVFA 86

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE-MVSDTVVLHGM 150
           K VG   +  +  DG+ +  + +++E D+  L+  LRR   D+ I++E  V + V++ G 
Sbjct: 87  KGVGNTTLYAMDVDGQVVSAIHLVVEHDLDALKERLRREFPDAQIQLEASVPNGVIVRGS 146

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQ--------------YANSSSKKVMNLLNIAGEDQV 196
           V T QD+++ ++  + ++  S  ++               ++S+S  V+N L +    Q+
Sbjct: 147 VETPQDAKKVIDSVQAWVGASASSRGSAGGGGGGGSAMPASSSTSPNVVNQLKVRTPSQI 206

Query: 197 TLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            ++V + EV R +  ++GF          +  G  SG   +F +     F  E G  S+ 
Sbjct: 207 NIRVRVVEVSRKLTHELGFNWDSSLNRGRNTIGFGSGALSNFFSATSNTFSREAGSASLG 266

Query: 249 G--VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                   S  T+L AL        LAEP LTA+SG++A+F +GG+     ++ +  + S
Sbjct: 267 YNYTGSDGSLGTLLSALNSQGMASVLAEPNLTAMSGETAAFAAGGEVPIVLITGN--SVS 324

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVE 361
           +    YGV+L  TPT+LS  RI L I  EVSE     +        +P+  VR+ADTTVE
Sbjct: 325 IDYKSYGVILRMTPTLLSANRISLHIAPEVSELTSVGSVQLEGGSTIPALTVRRADTTVE 384

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L SG +  LAG+L+    Q   G+P LS IP+LG  F     + EETE+ I AT ++V P
Sbjct: 385 LASGQSFALAGMLRSSNSQTVAGVPGLSGIPLLGRAFERESTSSEETELVIIATAYVVAP 444

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           V+   L  P     +  DA    F     +Y
Sbjct: 445 VSAGTLQTPGQGAKML-DANTPRFGAAGYLY 474


>gi|320156053|ref|YP_004188432.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus
           MO6-24/O]
 gi|319931365|gb|ADV86229.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus
           MO6-24/O]
          Length = 462

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 110/455 (24%), Positives = 199/455 (43%), Gaps = 41/455 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             K+I + + +  ++ +  +++ V + D T ADV   S R+  +FG  VG+ +++++G +
Sbjct: 22  AAKQIDLEVGQSRLIPLSQEMRSVYIVDSTIADVKTPSARSALVFGAKVGKTDLVIVGKE 81

Query: 106 GKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           G+ + +  + +    ++ LE  L        I ++ V D++ + G V + + +   + L 
Sbjct: 82  GEAIAHYRLNVKNSGLSQLERHLETLYPSHRIALQSVGDSIAVAGTVASPEMAADILSLV 141

Query: 165 ETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVTIA 203
             F      ++                        S    V+N L I    QV + + + 
Sbjct: 142 NNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIRMV 201

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           E+ +   +++G +      S  P+       G +F +         ++   +F  ++ AL
Sbjct: 202 EMAKSTSEELGIRW----QSVNPNWMLGVSPGNQFATGIDLTDPDNLIKESAFMGIIDAL 257

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
              + +  LAEP LTA SG+ A F  GG+  + ++     +  V    +GV L  TPTVL
Sbjct: 258 ASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGE--SVGVEFKSFGVGLSVTPTVL 315

Query: 324 SPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           S  RI L +   VS    +  I +N  D+P    R A TT+EL  G +  LAGLL+   +
Sbjct: 316 SENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTSEE 375

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVED 438
              + IP L ++P +GALFR ++  + E E+ I AT  LV+P   +  +  P DH+    
Sbjct: 376 NSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRAPT 435

Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
             +   F  +            +     G  G+ Y
Sbjct: 436 RLERLLFGELE--------GHTDTPKLIGDYGYRY 462


>gi|78186537|ref|YP_374580.1| type II secretion system protein [Chlorobium luteolum DSM 273]
 gi|78166439|gb|ABB23537.1| type II secretion system protein [Chlorobium luteolum DSM 273]
          Length = 461

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 109/446 (24%), Positives = 199/446 (44%), Gaps = 51/446 (11%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           + + +  + ++   ++ V V +P  AD ++ +   +YL GK  G  N+IL    G     
Sbjct: 25  VPVGESRVYRLEQPIKRVAVGNPEVADYIMLNSSELYLLGKKTGATNLILWDQKGNCTST 84

Query: 112 LDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           L + + R++  ++  L+  +  +++I++      +VL G       ++ A  L + +L  
Sbjct: 85  L-LQVSRNVYPIKKLLKTALPKETDIQIFASGPALVLAGSASNSLAAESAYRLVKAYLGG 143

Query: 171 -------------------------------------SGRNQYANSSSKKVMNLLNIAGE 193
                                                +     A +    ++NLL +   
Sbjct: 144 TVPGVNPESSLSNSGSGSAAPASMSGTQNSSYAAPVIATSASTAPAGMSGLVNLLTVRDT 203

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L+V IAEV +  ++ +G        + G   +  +   G   +   +  ++   + 
Sbjct: 204 QQVRLEVRIAEVSKSYIETLGLGW-----TQGVGNTQGSLMTGFVSNATLNLLLQTKSNP 258

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +    + A  +   I+ LAEPT+ A+SGQ   F  GG+    T+S + GA       YG
Sbjct: 259 GN-RLDMDAERKEGLIKILAEPTMVAMSGQEGYFLVGGKVYTPTLS-TNGAVDYVERTYG 316

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           V L FTP VL  GRI L++  EVSEP    V    +G +P ++   A +TV++  G  +V
Sbjct: 317 VGLRFTPVVLDSGRISLKVAPEVSEPLKEAVTAGTSGPLPGFKTSFASSTVQMREGENLV 376

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + GLL+D++ ++   +PLL+ IPILG+LFR++  + E TE+ +   P L+K    +    
Sbjct: 377 IGGLLRDNLTEVVRAVPLLADIPILGSLFRHTEKSSETTELMVIIRPTLIKASD-KAPEL 435

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPK 455
           P D +     ++ F   ++    G K
Sbjct: 436 PTDRFVPPSSSELFIEGKLQSSRGSK 461


>gi|260775653|ref|ZP_05884549.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608069|gb|EEX34238.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
          Length = 442

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 117/428 (27%), Positives = 188/428 (43%), Gaps = 34/428 (7%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
              +   + + +            ++  V VS+P  AD  V     + ++ K+ G++++I
Sbjct: 18  ATTVAASEYLPMAEGDARPFATQQEIGTVFVSNPAVADYQVIDKHKVVIYSKSTGKSSLI 77

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           +    G  +L+  I + +    ++  LR    ++ +    V + VVL G V + Q     
Sbjct: 78  VFDQSGNTILSRRIQVNKSADSIQRYLRNHYPNAQVNAYYVGEQVVLSGTVSSEQVKDEI 137

Query: 161 VELSETFLSQSGRNQ---------------YANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
             +    L +    Q                       V+N + +    QV +KV+IAEV
Sbjct: 138 YIVVGEMLEKPANRQKFELETEDESYEMKFMERREYDGVVNNIEVVVTKQVNVKVSIAEV 197

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            +  L+QIG  +   G   G          G FV+    FS   +L       +++A++ 
Sbjct: 198 SQKALEQIGVSYFSKGQVPG---------SGVFVNAINAFSADDIL------MMINAIDN 242

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
            +  R LAEP L+  SG+SASF  GG+    T  +  G +SV+  ++GV L     V   
Sbjct: 243 ESVGRVLAEPNLSVTSGESASFLVGGELPVVT--TIDGGSSVSYKEFGVRLELMAKVKRD 300

Query: 326 GRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            +I L +  EVS        +  D+P+ + R+A TTVEL  G + VL GLL  +  +   
Sbjct: 301 NKITLSLVPEVSSLDSQYENDTYDLPALKTRRARTTVELGDGQSFVLGGLLSSEDMESLS 360

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            IPL+  IPILG LFRN+   R +TE+ I AT  LVKPV    +S P  + +        
Sbjct: 361 KIPLIGDIPILGTLFRNAETERNKTELIIVATVNLVKPVETSTISLPTINRTSTLKRMFS 420

Query: 444 FFNRVNKI 451
           + N   KI
Sbjct: 421 WENDEEKI 428


>gi|254506218|ref|ZP_05118362.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
 gi|219551036|gb|EED28017.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
          Length = 431

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 117/439 (26%), Positives = 201/439 (45%), Gaps = 38/439 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++G  +   +    ++  V +SDP  AD  V     + +FGK VG  +++    + + +
Sbjct: 12  MNLGEGEAKAINTKAEIASVFISDPQIADYQVVDKNKLVIFGKKVGTVSLLAFDDNSETI 71

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           ++  +++ + + H++  ++    D +I +  + + VVL G V + +       L    L+
Sbjct: 72  ISRKLVVNQSLIHIQQQVQIRYPDVSISIYNLGEQVVLAGKVPSEKIRDEINILVGELLN 131

Query: 170 QS---------------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           +                          K ++N + ++   QV +K++IAEV +  L+Q G
Sbjct: 132 KEYEDYKIEWDLGENTYEMEFMTRRHYKGIVNNIEVSTTKQVNVKLSIAEVSQSFLEQFG 191

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            ++    SS+          GG FV +  +FS   ++       V+ A+      + LAE
Sbjct: 192 VKYGTLDSSANF-------MGGTFVDQLINFSAADIVS------VISAIGDDAVGQVLAE 238

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L+ ISG++ASF  GG+    TV    G T+V   ++G+ L     VL   +I L +  
Sbjct: 239 PNLSVISGETASFLVGGEIPVVTVV--DGGTNVLFKEFGIRLEMMAKVLQDDKIKLSLMP 296

Query: 335 EVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           EVS            +P+ + R+A TTVEL  G + VL GLL  + ++    +P +  +P
Sbjct: 297 EVSSLDTQYQNDRYSLPALKTRRARTTVELGDGQSFVLGGLLSTEDRESLSRVPFIGDVP 356

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           ILGALFR++   R +TE+ I AT  LVKPV    +  P          + FF   V   Y
Sbjct: 357 ILGALFRHTETVRNKTELVIVATVNLVKPVNPSQIQLPT--MKRTTTMQRFF--NVEYSY 412

Query: 453 GPKEASEVEGQNYKGAIGF 471
            P  AS+   +    A GF
Sbjct: 413 TP--ASKAWAEEVLQAGGF 429


>gi|27365651|ref|NP_761179.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6]
 gi|27361799|gb|AAO10706.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6]
          Length = 462

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 110/455 (24%), Positives = 199/455 (43%), Gaps = 41/455 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             K+I + + +  ++ +  +++ V + D T ADV   S R+  +FG  VG+ +++++G +
Sbjct: 22  AAKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKTPSARSALVFGAKVGKTDLVIVGKE 81

Query: 106 GKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           G+ + +  + +    ++ LE  L        I ++ V D++ + G V + + +   + L 
Sbjct: 82  GEAIAHYRLNVKNSGLSQLERHLETLYPSHRITLQSVGDSIAVAGTVASPEMAADILSLV 141

Query: 165 ETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVTIA 203
             F      ++                        S    V+N L I    QV + + + 
Sbjct: 142 NNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIRMV 201

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           E+ +   +++G +      S  P+       G +F +         ++   +F  ++ AL
Sbjct: 202 EMAKSTSEELGIRW----QSVNPNWMLGVSPGNQFATGIDLTDPDNLIKESAFMGIIDAL 257

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
              + +  LAEP LTA SG+ A F  GG+  + ++     +  V    +GV L  TPTVL
Sbjct: 258 ASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGE--SVGVEFKSFGVGLSVTPTVL 315

Query: 324 SPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           S  RI L +   VS    +  I +N  D+P    R A TT+EL  G +  LAGLL+   +
Sbjct: 316 SENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTSEE 375

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVED 438
              + IP L ++P +GALFR ++  + E E+ I AT  LV+P   +  +  P DH+    
Sbjct: 376 NSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRAPT 435

Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
             +   F  +            +     G  G+ Y
Sbjct: 436 RLERLLFGELE--------GHTDTPKLIGDYGYRY 462


>gi|197337022|ref|YP_002157812.1| general secretion pathway protein D [Vibrio fischeri MJ11]
 gi|197314274|gb|ACH63723.1| general secretion pathway protein D [Vibrio fischeri MJ11]
          Length = 440

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 116/402 (28%), Positives = 187/402 (46%), Gaps = 38/402 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
            G  I++      ++    DV  V VSDP  AD  V   + + ++GK +GQ++V++   +
Sbjct: 23  AGNIINMSEGDSQVILANKDVGSVFVSDPKIADYQVIEKKKVIVYGKKIGQSSVMVFDRN 82

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G  + N  +++ + +  ++  +     D ++ V  + + VVL G V T Q+      +  
Sbjct: 83  GHTLANKKVIVNKSLDSIKQYISVKYPDVDVDVFNIGEQVVLSGTVSTEQEKDEINNIVG 142

Query: 166 TFLSQSGR---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
             L +                       +  K ++N + +A   QV +K++IAEV +  L
Sbjct: 143 QLLDKDDEKFTFEQDMEDQDYEIQFMERTDYKGIVNNIEVATTKQVNVKISIAEVSQSFL 202

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
           + IG Q+               D  G F+     FS           +V+ A+   T  +
Sbjct: 203 QDIGIQY-------------GTDAAGVFIQPLTHFS------SSDIMSVITAIGSDTVGQ 243

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP L+ +SG+SASF  GG+    T      +T+V   +YGV L     V    +I L
Sbjct: 244 ILAEPNLSVVSGESASFLVGGELPVVTTV--NNSTNVMYKEYGVRLELMAKVKKDDKITL 301

Query: 331 RIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            +  EVS   I    ++ D+P+ + R+A TTVEL  G + VL GLL  + ++  + IP +
Sbjct: 302 SLVPEVSSLDIQYENDSYDLPALKTRRARTTVELGDGQSFVLGGLLSSEDKESLQKIPFI 361

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
             IPILGALFR S   R +TE+ I AT  LVKP+    +  P
Sbjct: 362 GDIPILGALFRGSSTKRNKTELLIVATVNLVKPIHSSQIQLP 403


>gi|145299828|ref|YP_001142669.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852600|gb|ABO90921.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 461

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 112/457 (24%), Positives = 193/457 (42%), Gaps = 38/457 (8%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +++   +  +L     V+D  V++     V   S + + ++G+ VG+ ++++   D
Sbjct: 14  AAESLTLTPEQSTLLNFDEPVRDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTAQD 73

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G+ + +  + +  D+A L+   R+    S +        +V+ G V +   +   + + E
Sbjct: 74  GRTLGHYRVQVVADLAPLKQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILAMVE 133

Query: 166 TFLSQSGRNQYANSS------------------------SKKVMNLLNIAGEDQVTLKVT 201
            F          +                             V+N L +AG DQ+ + V 
Sbjct: 134 AFAKGIQPQGVPSGPVAPAQPQSGNQDEGAAVAGGGSGQYANVINQLRLAGSDQINISVR 193

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           I E++R   +Q+G + S  G             G +F       S  G  D      ++ 
Sbjct: 194 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 249

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL   + +  LAEP LTA SG++A+F SGG+  +   +   G   +    +G+ L  TPT
Sbjct: 250 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 308

Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           +L   RI L +  EVS    E  + +    +P    R+  TT+EL  G +  LAGL++  
Sbjct: 309 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 368

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSV 436
             Q  E +P L +IP L   F ++ F  +E+E+ I AT  LV+P +    LS P DHY  
Sbjct: 369 RNQSSEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 428

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
               +  FF  +    G  E    +     G  G+ Y
Sbjct: 429 PSRFERRFFTDM----GSTERPGAQATRLFGNYGYSY 461


>gi|37680194|ref|NP_934803.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
 gi|37198941|dbj|BAC94774.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
          Length = 462

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 110/455 (24%), Positives = 199/455 (43%), Gaps = 41/455 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             K+I + + +  ++ +  +++ V + D T ADV   S R+  +FG  VG+ +++++G +
Sbjct: 22  AAKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKTPSARSALVFGAKVGKTDLVIVGKE 81

Query: 106 GKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           G+ + +  + +    ++ LE  L        I ++ V D++ + G V + + +   + L 
Sbjct: 82  GEAIAHYRLNVKNSGLSQLEHHLETLYPSHRITLQSVGDSIAVAGTVASPEMAADILSLV 141

Query: 165 ETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVTIA 203
             F      ++                        S    V+N L I    QV + + + 
Sbjct: 142 NNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIRMV 201

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           E+ +   +++G +      S  P+       G +F +         ++   +F  ++ AL
Sbjct: 202 EMAKSTSEELGIRW----QSVNPNWMLGVSPGNQFATGIDLTDPDNLIKESAFMGIIDAL 257

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
              + +  LAEP LTA SG+ A F  GG+  + ++     +  V    +GV L  TPTVL
Sbjct: 258 ASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGE--SVGVEFKSFGVGLSVTPTVL 315

Query: 324 SPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           S  RI L +   VS    +  I +N  D+P    R A TT+EL  G +  LAGLL+   +
Sbjct: 316 SENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTSEE 375

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVED 438
              + IP L ++P +GALFR ++  + E E+ I AT  LV+P   +  +  P DH+    
Sbjct: 376 NSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRAPT 435

Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
             +   F  +            +     G  G+ Y
Sbjct: 436 RLERLLFGELE--------GHTDTPKLIGDYGYRY 462


>gi|253687068|ref|YP_003016258.1| type II and III secretion system protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753646|gb|ACT11722.1| type II and III secretion system protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 478

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 228/457 (49%), Gaps = 27/457 (5%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T   +++  LF++   V     +  A      +S   I    ++ + +N+  +LQ+    
Sbjct: 15  TCKRLLAACLFNAVLPVTLTTMMLPATTLAAGVSTAPI--TDEVHLTVNQGRLLQLADTP 72

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
             VLV+DP  A   + SP  ++++ K+VG   +  +  +G  +  + ++ E D+  L   
Sbjct: 73  DSVLVADPNIASFELPSPGNLFVYAKSVGVTTLYAMDENGNVINAIRLVSEHDLKALGER 132

Query: 127 LRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ---------- 175
           ++R    ++I++E  +   V++ G V T QD++R ++  + ++S S   Q          
Sbjct: 133 MKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASSGGQGGGGGGGEKL 192

Query: 176 -YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAAD 233
             ++ SS KV+N L I    Q+ ++V + EV R +  ++GF  + + S+ SG   + +  
Sbjct: 193 PGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMSAGSGS 252

Query: 234 FGGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFT 288
               F +  G FS        +F       +L A+ +      LAEP LTA+SG++A+F 
Sbjct: 253 RLNLFNATTGRFSNPTDSGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGETAAFA 312

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGV 343
           +GG+     ++    + S+    YGV+L  TPT+LS  RI L I  EVSE      V   
Sbjct: 313 AGGEVPIVLIT--NNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQLE 370

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +P+  VR+ADTTVEL SG +  LAG+L+    Q   G+P LS +P+ G LF +   
Sbjct: 371 GGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFESEAT 430

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           ++EETE+ I AT ++V+PV   DL  P     + D +
Sbjct: 431 SQEETELVIIATAYVVEPVNAGDLQTPGQGVKMLDSS 467


>gi|149188863|ref|ZP_01867153.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
 gi|148837283|gb|EDL54230.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
          Length = 456

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 110/406 (27%), Positives = 191/406 (47%), Gaps = 47/406 (11%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    +Q+ + +  V +S+P  AD  + +  T+ +F   VGQ+ +I+ G +   +L
Sbjct: 34  SITLNDGQHIQLKMPIGKVFISNPAIADYKIINDNTLVVFANGVGQSRLIVYGTNNDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ D++ +   L+    D+ ++V+ V + V + G+V + Q       L  T L +
Sbjct: 94  SDRIIVDLDLSEVRRQLKFHFPDAKVKVQSVGEQVAVSGVVDSEQTRDDIYRLVATLLGR 153

Query: 171 SGRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++                         N + + ++  + +A   QV +K+++A+V 
Sbjct: 154 EKIKKWDKTEKLEFKSEHMERKEPESMVFARNMTWEGILERIEVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               K +G   S  GSS G                     V    D  +  T++ AL   
Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
           +    LAEP LT +SG+SASF  GG+      +S+    ++T  ++G+ L  T  VLS  
Sbjct: 255 SIAEVLAEPNLTVLSGESASFLVGGEVPVIVSTSNN--VNITFKEFGIKLDLTAKVLSQD 312

Query: 327 RIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I +++  EVSE    V A    +P    R+A TTVEL  G + +L GL+     +  + 
Sbjct: 313 KIRMQLSPEVSEVESYVEAAGVKVPQLASRRAMTTVELADGDSFILGGLMSSSDLEKMQK 372

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           IP +  +P+LGA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 373 IPFIGDVPVLGAAFRKATTQRKRTELIIVATVNLVEPMKPKDIQLP 418


>gi|88866586|gb|ABD57354.1| FlpC [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 479

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 112/457 (24%), Positives = 193/457 (42%), Gaps = 38/457 (8%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +++   +  +L     V+D  V++     V   S + + ++G+ VG+ ++++   D
Sbjct: 32  AAESLTLTPEQSTLLNFDEPVRDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTAQD 91

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G+ + +  + +  D+A L+   R+    S +        +V+ G V +   +   + + E
Sbjct: 92  GRTLGHYRVQVVADLAPLKQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILAMVE 151

Query: 166 TFLSQSGRNQYANSS------------------------SKKVMNLLNIAGEDQVTLKVT 201
            F          +                             V+N L +AG DQ+ + V 
Sbjct: 152 AFAKGIQPQGVPSGPVAPAQPQSGNQDEGAAVAGGGSGQYANVINQLRLAGSDQINISVR 211

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           I E++R   +Q+G + S  G             G +F       S  G  D      ++ 
Sbjct: 212 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 267

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL   + +  LAEP LTA SG++A+F SGG+  +   +   G   +    +G+ L  TPT
Sbjct: 268 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 326

Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           +L   RI L +  EVS    E  + +    +P    R+  TT+EL  G +  LAGL++  
Sbjct: 327 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSV 436
             Q  E +P L +IP L   F ++ F  +E+E+ I AT  LV+P +    LS P DHY  
Sbjct: 387 RNQSSEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 446

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
               +  FF  +    G  E    +     G  G+ Y
Sbjct: 447 PSRFERRFFTDM----GSTERPGAQATRLFGNYGYSY 479


>gi|59713403|ref|YP_206178.1| general secretion pathway protein D [Vibrio fischeri ES114]
 gi|59481651|gb|AAW87290.1| general secretion pathway protein D [Vibrio fischeri ES114]
          Length = 440

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 116/402 (28%), Positives = 187/402 (46%), Gaps = 38/402 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
            G  I++      ++    DV  V VSDP  AD  V   + + ++GK +GQ++V++   +
Sbjct: 23  AGNIINMSEGDSQVILANKDVGSVFVSDPKIADYQVIEKKKVIVYGKKIGQSSVMVFDRN 82

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G  + N  +++ + +  ++  +     D ++ V  + + VVL G V T Q+      +  
Sbjct: 83  GHTLANKKLIVNKSLDSIKQYISVKYPDVDVDVFNIGEQVVLSGTVSTEQEKDEINNIVG 142

Query: 166 TFLSQSGR---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
             L +                       +  K ++N + +A   QV +K++IAEV +  L
Sbjct: 143 QLLDKDDEKFTFEQDMEDQDYEIQFMERTDYKGIVNNIEVATTKQVNVKISIAEVSQSFL 202

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
           + IG Q+               D  G F+     FS           +V+ A+   T  +
Sbjct: 203 QDIGIQY-------------GTDAAGVFIQPLTHFS------SSDIMSVITAIGSDTVGQ 243

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP L+ +SG+SASF  GG+    T      +T+V   +YGV L     V    +I L
Sbjct: 244 ILAEPNLSVVSGESASFLVGGELPVVTTV--NNSTNVMYKEYGVRLELMAKVKKDDKITL 301

Query: 331 RIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            +  EVS   I    ++ D+P+ + R+A TTVEL  G + VL GLL  + ++  + IP +
Sbjct: 302 SLVPEVSSLDIQYENDSYDLPALKTRRARTTVELGDGQSFVLGGLLSSEDKESLQKIPFI 361

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
             IPILGALFR S   R +TE+ I AT  LVKP+    +  P
Sbjct: 362 GDIPILGALFRGSSTKRNKTELLIVATVNLVKPIHSSQIQLP 403


>gi|227326302|ref|ZP_03830326.1| hypothetical protein PcarcW_02904 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 479

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 129/458 (28%), Positives = 226/458 (49%), Gaps = 28/458 (6%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T   +++  LF++   V     +  A      +S   +    ++ + +N+  +L +    
Sbjct: 15  TCKRLLAAGLFNAVLPVTLTTMMLPATTLAAGVSVAPV--TDEVRLTVNQGRLLHLNALP 72

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
             VLV+DP  A   + SP  ++++ K+VG   +  +  +G  +  + ++ E D+  L   
Sbjct: 73  DSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKALGER 132

Query: 127 LRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ---------- 175
           ++R    ++I++E  +   V++ G V T QD++R ++  + ++S S              
Sbjct: 133 MKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASSGGGGQGGGGGGER 192

Query: 176 --YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAA 232
              ++ SS KV+N L I    Q+ ++V + EV R +  ++GF  + + S+ SG   + + 
Sbjct: 193 LPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTAGSG 252

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASF 287
                F +  G F+        +F       +L A+ +      LAEP LTA+SG++A+F
Sbjct: 253 SRLNLFNATTGRFANPTDAGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGETAAF 312

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIG 342
            +GG+     ++    + S+    YGV+L  TPT+LS  RI L I  EVSE      V  
Sbjct: 313 AAGGEVPIVLIT--NNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQL 370

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                +P+  VR+ADTTVEL SG +  LAG+L+    Q   G+P LS +P+ G LF +  
Sbjct: 371 EGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFESES 430

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
            ++EETE+ I AT ++V+PV   DL  P     + D +
Sbjct: 431 TSQEETELVIIATAYVVEPVNAGDLQTPGQGVKMLDSS 468


>gi|19749313|gb|AAL98683.1| Y4xJ [Sinorhizobium fredii]
          Length = 411

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 129/450 (28%), Positives = 195/450 (43%), Gaps = 54/450 (12%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
            + AV   +   I     +S  L K + L  P     + V+DP  AD    S RT+++FG
Sbjct: 9   GDEAVPRAAPNSINATLNLSSSLGKTVHL--PAPAATIFVADPPIADYQAPSNRTIFVFG 66

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           K  G+ ++  +  +G+ +  L +++ + I  L   LR  + D  I V       +L G  
Sbjct: 67  KKFGRTSLFALDENGEALAELHVVVTQPIGDLRAMLRDQVGDYPIHVSYTPRGAILSGTA 126

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
              +    A  ++E FL               ++N + +AG  QV L V +AEV R  LK
Sbjct: 127 PNAEVVDIAKRVTEQFLGDGAP----------IVNNIKVAGSLQVNLSVRVAEVSRSSLK 176

Query: 212 QIGFQHSITGSSSGPSKSFA--ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            +G   S  G                G     GG   +    D  S   VL AL +    
Sbjct: 177 ALGINLSAFGQFGNFKVGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLDALAKEHIA 236

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             LAEP LTA+SG++ASF +GG                          F PTVL    I 
Sbjct: 237 SVLAEPNLTAMSGETASFLAGG-------------------------EFVPTVLDNNLIN 271

Query: 330 LRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           + ++ EVSE      + VN   +P+   R+ADT VEL SG + V+ GL++ ++       
Sbjct: 272 IHVKPEVSELSLQGAVQVNGIAVPAVSTRRADTVVELASGQSFVIGGLIRRNVNNDISAF 331

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFF 444
           P L +IPILGALFR+S F +EE+E+ I  TP++V+P      +S P D  +         
Sbjct: 332 PWLGRIPILGALFRSSSFQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAPA------- 384

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
              +      + A   +  + KG +GFI +
Sbjct: 385 ---LGTPPRARAAISTDAPSVKGDLGFIIE 411


>gi|197117446|ref|YP_002137873.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
 gi|197086806|gb|ACH38077.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
          Length = 451

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 118/444 (26%), Positives = 194/444 (43%), Gaps = 45/444 (10%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQA 97
           +       G   ++ +N+ ++L +    + V ++D    DV        + + GK +G  
Sbjct: 21  VEAATATAGVPTTVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGST 80

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           N+I+   +  +    D+ +  D   +E  +R +    +I V+   DTV+L G V      
Sbjct: 81  NLIVWEENNDKPTFFDVRVVGDREAIESQIRDYAPKDDISVQYAQDTVILSGKVANEMTG 140

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ- 216
           ++A E+++ +             S KV+N + +    QV L+V +A+V R  LK++G   
Sbjct: 141 KKAEEIAKAY-------------SAKVLNHITVDEPQQVLLQVKVAQVDRTSLKRLGLSA 187

Query: 217 ----------HSITGSSSGPSKS-------FAADFGGKFVSEGGDFSVKGVLDRFS---- 255
                      ++ G+ SG S++       F +  G   V           L+ F+    
Sbjct: 188 IVKGRTAEGFTNLVGAPSGTSRNTESTPTRFTSTEGNGIVGNIPGIGGFDPLNAFNVGVS 247

Query: 256 -----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VT 308
                   VL AL      + LAEP L   SG+  +F +G +  Y  + S+ GA++  + 
Sbjct: 248 YFPAGIGAVLQALSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIV 307

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
               GV L F P VL  G I L+I   EVS     +     P    R   T VEL  G +
Sbjct: 308 FETVGVKLKFKPQVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGES 367

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-D 426
           +VLAGLL+++  +    IPLL  IPILGALFR+S+ +  E ++    TP +VKP      
Sbjct: 368 LVLAGLLQEEQIKNMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVKPTPAGVA 427

Query: 427 LSRPDDHYSVEDDAKAFFFNRVNK 450
              P D  + E++    +  R  K
Sbjct: 428 TKLPTDAVTPEEEKGYDWIPRGGK 451


>gi|87312292|ref|ZP_01094390.1| putative outer membrane channel for pilus assembly CpaC
           [Blastopirellula marina DSM 3645]
 gi|87284996|gb|EAQ76932.1| putative outer membrane channel for pilus assembly CpaC
           [Blastopirellula marina DSM 3645]
          Length = 534

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 122/471 (25%), Positives = 203/471 (43%), Gaps = 27/471 (5%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           M S  +     ++A      +   AV N++       +++ + +N   I  +   +    
Sbjct: 1   MYSYGVACLLIAIATPAANAQDMGAVPNVNFKVDAPNQRLEMMVNSSRIFTLDEKIPKAQ 60

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V++P    +   SP  + +     G   V L   DG  +  +DI++  D   L++ L   
Sbjct: 61  VNNPDLLRLTPLSPNKIQVSALKPGVTQVNLWNEDG-TIHTIDIIVIGDGRELQLLLETE 119

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
             +S+I+V  ++ +VVL G V   +   R V ++E +               KV+N + +
Sbjct: 120 FPNSSIKVRPLASSVVLSGYVDRPEAVSRIVAMAEDY-------------YPKVINNITV 166

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSFAADFGGKFVS 240
            G  QV LKV + EV R  L+++G   +  GS             P+    +       +
Sbjct: 167 GGVQQVMLKVKVYEVSRTKLRRLGIDWAAIGSDYFISSTAANVLTPAGVLTSGARDALGA 226

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            G       +     F   L AL +    +  AEPTLT ISG+ ASF SGG+   +  S 
Sbjct: 227 TGQTVQFGVLGSSTQFFGFLDALRQNNVAKLSAEPTLTTISGRPASFLSGGEVPIQVASG 286

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G TS+    YG  + F P VL  G + L ++ EVSEP   V     P +R+R  DT V
Sbjct: 287 -LGTTSIEYKQYGTRVDFVPIVLGNGNLKLEVRPEVSEPDYSVAINGTPGFRLRWVDTAV 345

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           E+ +G +  LAGL+++ I+    G+P L+ +P +GA FR +  +R E E+ I  TP LV 
Sbjct: 346 EMKAGQSFALAGLIQEKIETETRGLPYLADLPWVGAAFRRNTDSRNEVELLIIVTPELVG 405

Query: 421 PVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
            +   ++    P  +  +  D + +    V     P   + +      G  
Sbjct: 406 ALNPEEVPCEYPGSNTGITTDCELYGRGYVEVPACPPGGACISEPGMIGPY 456


>gi|253701800|ref|YP_003022989.1| type II and III secretion system protein [Geobacter sp. M21]
 gi|251776650|gb|ACT19231.1| type II and III secretion system protein [Geobacter sp. M21]
          Length = 451

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 116/438 (26%), Positives = 189/438 (43%), Gaps = 45/438 (10%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQA 97
           I       G   ++ +N+ ++L +    + V ++D    DV        + + GK +G  
Sbjct: 21  IEATNATAGVPTTVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGST 80

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           N+I+   + +     D+ +  D   +E  +R +  + +I V+   DTVVL G V      
Sbjct: 81  NLIVWEENNENPTFFDVRVVGDREAIESQIRDYAPNDDISVQYAQDTVVLSGKVANEMTG 140

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ- 216
           ++A E+++ +             S KV+N + +    QV L+V +A+V R  LK++G   
Sbjct: 141 KKAEEIAKAY-------------SAKVLNHITVDEPQQVLLQVKVAQVDRTSLKRLGISA 187

Query: 217 ----------HSITGSSSGPSKSF-----------AADFGGKFVSEGG-----DFSVKGV 250
                      ++ G+ SG S              A+   G     G       F+V   
Sbjct: 188 MVKGRTAEGFMNLVGAPSGTSSVTNSSATRFTSTEASGIAGSIPGLGSFDPLDAFNVGVS 247

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VT 308
                   VL AL      + LAEP L   SG+  +F +G +  Y  + S+ GA++  + 
Sbjct: 248 YFPAGIGAVLQALSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSII 307

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
               GV L F P VL  G I L+I   EVS     +     P    R   T VEL  G +
Sbjct: 308 FETVGVKLKFKPQVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGES 367

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-D 426
           ++LAGLL+++  +    IPLL  IPILGALFR+S+ +  E ++    TP +VKP      
Sbjct: 368 LILAGLLQEEQIKTMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVKPTPAGVA 427

Query: 427 LSRPDDHYSVEDDAKAFF 444
              P D  +  ++    +
Sbjct: 428 TKLPTDAVTPAEEKGYDW 445


>gi|330830432|ref|YP_004393384.1| protein transporter, outer membrane secretin (secretin) family
           [Aeromonas veronii B565]
 gi|328805568|gb|AEB50767.1| Protein transporter, outer bacterial membrane secretin (Secretin)
           family [Aeromonas veronii B565]
          Length = 465

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 114/459 (24%), Positives = 194/459 (42%), Gaps = 38/459 (8%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
               + +++   +  +L     V D  V++     V   S + + ++G+ VG  ++++  
Sbjct: 16  AAAAESLTLTPEQSTLLNFDEPVLDAFVANSELVRVHSPSDQQLLIYGRKVGHTDLVVTA 75

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
            DG+ + +  + +  D+A LE   R+    S +        +V+ G V +   +   + +
Sbjct: 76  LDGRTLGHYRVTVVADLAPLEQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILSM 135

Query: 164 SETFLSQSGRNQYANSS------------------------SKKVMNLLNIAGEDQVTLK 199
            E F         A S+                           V+N L +AG DQ+ + 
Sbjct: 136 VEGFAKGLQPQSVAQSTVMAPSPQAGNQDEGAAVAGGGSGQYANVINQLRLAGSDQINIS 195

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           V I E++R   +Q+G + S  G             G +F       S  G  D      +
Sbjct: 196 VRIVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPLERGSWTGKKDVVYINAI 251

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + AL   + +  LAEP LTA SG++A+F SGG+  +   +   G   +    +G+ L  T
Sbjct: 252 IDALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELT 310

Query: 320 PTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PT+L   RI L +  EVS    E  + +    +P    R+  TT+EL  G +  LAGL++
Sbjct: 311 PTLLDNNRISLTVSPEVSTLSRENSVTIAGVVVPGIETRRTTTTIELADGQSFALAGLVR 370

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY 434
               Q  E +P L +IP L   F ++ F  +E+E+ I AT  LV+P +    LS P DHY
Sbjct: 371 SHRNQNNEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHY 430

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
                 +  FF  +    G  ++   +     G  G+ Y
Sbjct: 431 RAPSRFERLFFTDM----GSTQSPAAQTTRLFGNYGYSY 465


>gi|325108834|ref|YP_004269902.1| type II and III secretion system protein [Planctomyces brasiliensis
           DSM 5305]
 gi|324969102|gb|ADY59880.1| type II and III secretion system protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 736

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/477 (22%), Positives = 198/477 (41%), Gaps = 53/477 (11%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
           +A ++++  VE    +K+ + LN+  +++    V  + ++DPT  D+         + G 
Sbjct: 58  DARIVSMPQVE----RKLELVLNRSQLVKTRSRVTRMAIADPTVIDIAPFEEDEFAIIGT 113

Query: 93  NVGQANVILIGHDGKQMLNLDILI----------ERDIAHLEMTLRRFIADSNIRVEMVS 142
            +G   + L   +    L  ++ +            D   LE  +     +S + +  + 
Sbjct: 114 AIGSTTLTLWFENDDNPLIYEVTVIDDPNVEEQLRIDYGKLERKIAILFPNSKVYLIPLH 173

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS---------------------- 180
           + +V+ G  +   ++ R +++            Y  +                       
Sbjct: 174 EKLVVKGQAKDAAEAARILQIVRGEFLDDYGGLYGPNGGAGRGGGGGGGYDDDGIRDEDD 233

Query: 181 --SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
             S  ++N+L + GE QV L VTIAE+ R  L+++G   ++  ++          F G  
Sbjct: 234 LYSSFIVNMLQVPGEYQVMLHVTIAELNRSQLRRMGVDFAVLFAN-------GQHFIGST 286

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           +S GG  ++ G+ +      +++AL      + L+ P+LT +SG  A F +GG+    T 
Sbjct: 287 IS-GGVPTLTGIFNNGDISVLINALASNGTAKILSRPSLTTLSGHPAQFLAGGEFAVPTT 345

Query: 299 SSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
               G   TS     +G  +   PTV+      LRI  E S+     + G +P    R+ 
Sbjct: 346 VGVGGVQGTSTQFRGFGTSMVVVPTVVDGDLFRLRIAPEFSQINQNNSVGGIPGLDSRRV 405

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL-FRNSRFNREETEIFIAAT 415
            TTVEL  G TIVL GLL          IPLL +IP++G L F   R   +E E+ +  T
Sbjct: 406 QTTVELREGQTIVLGGLLSRQTASEVTRIPLLGEIPLIGPLMFNTKRATEDELELLVLVT 465

Query: 416 PFLVKPVAMRDL-SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
           P +V+ +   ++   P  + +  +D + +   R     G  +    +   Y   +G+
Sbjct: 466 PEIVRAMDPDEVPPMPGYYVTHPNDRELY---RYAMTEGAPDLEVYQLAPYGNKVGY 519


>gi|251791991|ref|YP_003006711.1| RcpA [Aggregatibacter aphrophilus NJ8700]
 gi|247533378|gb|ACS96624.1| RcpA [Aggregatibacter aphrophilus NJ8700]
          Length = 460

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 188/417 (45%), Gaps = 29/417 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            +  S+      ++Q    +  + VS P+ AD  +    T  ++ K+ G+A V   G DG
Sbjct: 29  AQNFSLEKGATQLVQTKEKIDTIFVSSPSVADYEILDDNTFIIYAKDEGKAEVTAFGADG 88

Query: 107 KQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
           + + +  + ++    +IA     L+    ++N+ V+ V    V+ G  RT ++S     +
Sbjct: 89  RPLTSDTVNVDSVVTNIADTNKQLKTHFPNTNLSVKKVGKAYVIEGKARTQEESDEVRRI 148

Query: 164 S-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                       ET L           S + V++  NI    Q+ +K+T+ EV + + + 
Sbjct: 149 VGEALGTGRKVTETKLGNESVPFLDKYSYEGVVDHSNINDTTQINVKLTVVEVNKKLSEA 208

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIR 270
           +G   S    S           GG F + GG    +GVL  D       ++AL+  +  +
Sbjct: 209 MGINWSHIAGS-------GPLLGGNFSAAGGFNGTQGVLRLDAKGISAFINALDNQSNGK 261

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP ++ +SG++A    GG+  +       G+ S+   ++GV L     +    RI L
Sbjct: 262 ILAEPNISMLSGETADILVGGEIPFAQ-RDKEGSPSIIYKEFGVKLAVAAKLQKNNRIRL 320

Query: 331 RIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            +   VS      N    G++P +  R+A +  E+ +G + ++ GL   +  +    +PL
Sbjct: 321 VLDQSVSTLAGNYNFEGIGNIPYFDTRRAKSLFEVANGESFIIGGLFSSNDVEGINKVPL 380

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           L  +PILG+ FRN+  NRE+ E+ I AT  +VKPV  +++  PD  +      + FF
Sbjct: 381 LGDVPILGSFFRNASTNREKKELVIVATVNVVKPVEEKNIVYPD--FEQTGTMERFF 435


>gi|153948843|ref|YP_001399594.1| type II/III secretion system protein [Yersinia pseudotuberculosis
           IP 31758]
 gi|152960338|gb|ABS47799.1| type II/III secretion system protein [Yersinia pseudotuberculosis
           IP 31758]
          Length = 439

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 109/439 (24%), Positives = 193/439 (43%), Gaps = 37/439 (8%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
                K+I + +    I++   ++  V VS    AD  +    ++ ++ K  G A   L 
Sbjct: 28  NTATAKQIYLPIGGSHIIKTQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLF 87

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             + + +    +L+   I      +R    DS I +  + ++ +L G   T +       
Sbjct: 88  NKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTITS 147

Query: 163 L-----SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           +     +     +   +  +N   + V+N + +   +QV +K+TI E+ +D  + IG   
Sbjct: 148 IIGEATASKKEKEREESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDW 207

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           +   S++G  +                       +  S  T++HA+      + LAEP L
Sbjct: 208 NSIKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEPNL 248

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           + +SG+ ASF  GG+     VS++    SV   ++G+ L+    V    RI + +  EVS
Sbjct: 249 SVLSGEYASFLVGGEIPI--VSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVS 306

Query: 338 EPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                 N       PS R+RKA+TTVEL  G + +L GL+    ++  + IP +  +P+L
Sbjct: 307 SIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLL 366

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF-FNRVNKIYG 453
           GALFRN++  R ++E+ + AT  LVKPV+ R +  PD  +      + FF    +     
Sbjct: 367 GALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFFNLTNIKDAKR 424

Query: 454 PKEASEVEGQNYKGAIGFI 472
            K+A E     +    GFI
Sbjct: 425 RKQAKE-----FLQKGGFI 438


>gi|332162954|ref|YP_004299531.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325667184|gb|ADZ43828.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 410

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 115/402 (28%), Positives = 198/402 (49%), Gaps = 33/402 (8%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +++   ++  V VS    AD  +    ++ ++ K  G A  IL   +   +    IL++ 
Sbjct: 1   MIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDN 60

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------- 171
            I      +R    +S+I +  + D+ +L G V T +  +    +    +          
Sbjct: 61  TITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIGSEKTIASNS 120

Query: 172 -----GRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
                G NQY NS    +V+N + + G +QV +K+TIAEV +D  + IG   S  G+ SG
Sbjct: 121 KKDSDGNNQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSG 180

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
             + F  +   KF ++G                ++HA+   +  R LAEP L+ +SG+SA
Sbjct: 181 SFQFFKLNGSNKFNAKG-------------ISALVHAINDDSIARVLAEPNLSVLSGESA 227

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGV 343
           SF  GG+     V+++  +T +T   +G+ L+    V +  RI +++  EVS    V  +
Sbjct: 228 SFLVGGELP--LVNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNI 285

Query: 344 NAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           + GD  PS+R RKA TT+EL  G + +L GL+    ++  + IP +  IPILGA FRN+ 
Sbjct: 286 DGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFRNAE 345

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
             + +TE+ + AT  LV+PV+ +++  P  ++      + FF
Sbjct: 346 TRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFF 385


>gi|117618977|ref|YP_855991.1| protein transporter, outer bacterial membrane secretin (secretin)
           family protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117560384|gb|ABK37332.1| protein transporter, outer bacterial membrane secretin (secretin)
           family [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 465

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 113/457 (24%), Positives = 194/457 (42%), Gaps = 38/457 (8%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +++   +  +L     V D  V++     V   S + + ++G+ VG+ ++++   D
Sbjct: 18  AAESLTLTPEQSTLLNFDEPVLDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTALD 77

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G+ + +  + +  D+A L+   R+    S +        +V+ G V +   +   + + E
Sbjct: 78  GRTLGHYRVQVVADLAPLKQLARQHFPQSRLSFSESGGAIVVAGEVTSPLQAHEILTMVE 137

Query: 166 TFLSQSGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVT 201
            F         A  ++                          V+N L +AG DQ+ + V 
Sbjct: 138 GFAKGIQPQGSALGTTAPVPPQTGSQDEGAAVAGGGSGQYAHVINQLRLAGSDQINISVR 197

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           I E++R   +Q+G + S  G             G +F       S  G  D      ++ 
Sbjct: 198 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 253

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL   + +  LAEP LTA SG++A+F SGG+  +   +   G   +    +G+ L  TPT
Sbjct: 254 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 312

Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           +L   RI L +  EVS    E  + +    +P    R+  TT+EL  G +  LAGL++  
Sbjct: 313 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 372

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSV 436
             Q  E +P L +IP L   F ++ F  +E+E+ I AT  LV+P +    LS P DHY  
Sbjct: 373 RNQSSEALPFLGEIPGLAPFFGSNGFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 432

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
               +  FF  +    G  E    +     G  G+ Y
Sbjct: 433 PSRFERLFFTDM----GSTERPGAQATRLFGNYGYSY 465


>gi|51597670|ref|YP_071861.1| outer membrane secretin family protein [Yersinia pseudotuberculosis
           IP 32953]
 gi|186896808|ref|YP_001873920.1| type II and III secretion system protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590952|emb|CAH22610.1| putative outer membrane secretin family protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699834|gb|ACC90463.1| type II and III secretion system protein [Yersinia
           pseudotuberculosis PB1/+]
          Length = 439

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 109/437 (24%), Positives = 194/437 (44%), Gaps = 37/437 (8%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              K+I + +    I+++  ++  V VS    AD  +    ++ ++ K  G A   L   
Sbjct: 30  ANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNK 89

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL- 163
           + + +    +L+   I      +R    DS I +  + ++ +L G   T +       + 
Sbjct: 90  NHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIASIV 149

Query: 164 ----SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               +     +   +  +N   + V+N + +   +QV +K+TI E+ +D  + IG   + 
Sbjct: 150 GEATASKKEKEREESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNS 209

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             S++G  +                       +  S  T++HA+      + LAEP L+ 
Sbjct: 210 IKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEPNLSV 250

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           +SG+ ASF  GG+     VS++    SV   ++G+ L+    V    RI + +  EVS  
Sbjct: 251 LSGEYASFLVGGEIPI--VSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSI 308

Query: 340 VIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
               N       PS R+RKA+TTVEL  G + +L GL+    ++  + IP +  +P+LGA
Sbjct: 309 DKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGA 368

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF-FNRVNKIYGPK 455
           LFRN++  R ++E+ + AT  LVKPV+ R +  PD  +      + FF    +      K
Sbjct: 369 LFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFFNLTNIKDAKRRK 426

Query: 456 EASEVEGQNYKGAIGFI 472
           +A E     +    GFI
Sbjct: 427 QAKE-----FLQKGGFI 438


>gi|56477528|ref|YP_159117.1| outer membrane channel protein [Aromatoleum aromaticum EbN1]
 gi|56313571|emb|CAI08216.1| probable outer membrane channel protein,probably involved in pilus
           assembly [Aromatoleum aromaticum EbN1]
          Length = 566

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 135/523 (25%), Positives = 226/523 (43%), Gaps = 90/523 (17%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA---- 77
           + +  P +  A         VEI     ++I + K  +++  V V  +L+ +P  A    
Sbjct: 35  TSSATPRVAVATTNGSPCGRVEIAP--MVTIPVGKSSVIRPEVPVTRILLGNPDNAQAAR 92

Query: 78  ---------------------------DVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
                                      DV++ SP  +YL GK+VG  NV+L+   G    
Sbjct: 93  PSAEPAKDDKGGQQAKQSDGRPGVAQVDVLLLSPNEIYLLGKSVGSTNVVLVDRSGGC-T 151

Query: 111 NLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            LD+ +  D+  ++  L   + D   I+V    D++VL G V       RAVE++  ++ 
Sbjct: 152 ALDVTVAMDVTSVQGALTALLPDETGIKVSSAYDSLVLTGTVSDATKVDRAVEIASAYVR 211

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----------- 218
               +   N  + +V+N+L++    QV L+V +AEV + ++ + G   S           
Sbjct: 212 DG--DGGENGRNARVLNMLSVGAPQQVMLEVKVAEVSKAVMDRFGIDFSRAYAAGDGTMI 269

Query: 219 --ITGSSSG-------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------- 260
             ++G   G        S +  A  GG  V    + S    +     +  +         
Sbjct: 270 RFLSGVFGGKSPVGGQVSGTVGARVGGGIVDSISNASGTSAITAPIGDATIGGDATKVPL 329

Query: 261 -----------HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT- 308
                       A +    ++ LAEPT+ AISGQ  SF +GG+       +  G  +VT 
Sbjct: 330 ISGSNSTLIGVDAQKSDGLVKILAEPTVMAISGQEGSFLAGGKIFIPVSQNDGGTRTVTL 389

Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDM-PSYRVRKADT 358
              ++GV + FTPTVL  GRI L ++ EVSE           GVN   + PS+  R+A T
Sbjct: 390 EEKEFGVSVKFTPTVLEGGRINLAVRPEVSELNREGVGLTAPGVNGLAILPSFTTRRAFT 449

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TV+L  G +  + GL+K++     +  P L ++P++GALFR++ F  + +E+    TP L
Sbjct: 450 TVQLRDGQSFAIGGLIKNNTTTNIKAFPFLGELPVIGALFRSTEFQTDRSELVFVITPRL 509

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           VKP+   D + P D+Y     +   +  ++    GP  A   +
Sbjct: 510 VKPL-PEDYALPTDNYVEPSRSDVIWRGKLEGK-GPAPADHPD 550


>gi|197106489|ref|YP_002131866.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium
           zucineum HLK1]
 gi|196479909|gb|ACG79437.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium
           zucineum HLK1]
          Length = 438

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/380 (27%), Positives = 176/380 (46%), Gaps = 20/380 (5%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E    + I +  +K +  ++      ++VS P  A V   S R+ Y+ G   G  N+++ 
Sbjct: 33  EPAPRRSIHVPRDKSLSFRLAQPAARIVVSQPEIAKVTATSDRSFYVQGLEFGSTNMLVY 92

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
           G  G+ +  LDI +  D   L+  L     +  +RV  + + ++L G V       +A  
Sbjct: 93  GPGGRLLEVLDIRVGYDAEGLQQDLAAAFPNEPLRVRNLGEALMLTGEVTDTGVQYKAEA 152

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
           +++ +            +   +++ +++    QV L+V + E  R  L+ IG + +I  +
Sbjct: 153 IAQRY------------APDGLISRVSVRASQQVVLEVRVLEATRSALQDIGVEGAIGNN 200

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           S   + +F     G      G   + G       + +L ALE    +RTLA P L AI G
Sbjct: 201 S--WAVAFGNGLIGA-SPAAGALGISGGWGDTRIDLMLTALEEKGVVRTLARPNLVAIPG 257

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           Q A+F +GG++ Y  V       S+    YGV L FTP V   G I L ++ EVS+    
Sbjct: 258 QKATFHAGGEYPYP-VPQRDDLISLEFRKYGVELTFTPVVQDNGLIRLDVEPEVSQLDFT 316

Query: 343 ----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
               V    +P   VR+  TTVEL  G ++ + GL + +       +P +  +P+LG+LF
Sbjct: 317 NSLRVQGFTVPGLIVRRTHTTVELKPGESLAIGGLFQREYTNALRQVPGIGDVPVLGSLF 376

Query: 399 RNSRFNREETEIFIAATPFL 418
           R++R+ + ETE+ +  TP  
Sbjct: 377 RSARWKKAETELVVIVTPKF 396


>gi|227114876|ref|ZP_03828532.1| hypothetical protein PcarbP_18025 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 479

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 128/458 (27%), Positives = 227/458 (49%), Gaps = 28/458 (6%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T   +++  LF++   V     +  A      +S   +    ++ + +++  +LQ+    
Sbjct: 15  TCKRLLAAGLFNAVLPVTLTTMMLPATTLAAGVSVAPV--TDEVHLTVHQGRLLQLNELP 72

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
             VLV+DP  A   + SP  ++++ K+VG   +  +  +G  +  + ++ E D+  L   
Sbjct: 73  DSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKALGER 132

Query: 127 LRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------------GR 173
           ++R    ++I++E  +   V++ G V T QD++R ++  +T++  S             R
Sbjct: 133 MKREFPGADIQLEPSIPSGVIVRGSVDTPQDAKRVIDSIQTYIKSSVGGGQGGGGGGGER 192

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAA 232
              ++ +S  V+N L I    Q+ ++V + EV R +  ++GF  + + S+ SG   + + 
Sbjct: 193 LPGSSETSGNVVNQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTAGSG 252

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASF 287
                F +  G F+        +F       +L A+ +      LAEP LTA+SG++A+F
Sbjct: 253 SRLNLFNATTGRFANPTDAGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGETAAF 312

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIG 342
            +GG+     ++    + S+    YGV+L  TPT+LS  RI L I  EVSE      V  
Sbjct: 313 AAGGEVPIVLIT--NNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQL 370

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                +P+  VR+ADTTVEL SG +  LAG+L+    Q   G+P LS +P+ G LF +  
Sbjct: 371 EGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFESEA 430

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
            ++EETE+ I AT ++V+PV   DL  P     + D +
Sbjct: 431 TSQEETELVIIATAYVVEPVNAGDLQTPGQGVKMLDSS 468


>gi|227820510|ref|YP_002824481.1| type II and III secretion system protein RhcC2 [Sinorhizobium
           fredii NGR234]
 gi|227339509|gb|ACP23728.1| type II and III secretion system protein RhcC2 [Sinorhizobium
           fredii NGR234]
          Length = 447

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 117/424 (27%), Positives = 199/424 (46%), Gaps = 20/424 (4%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           +FL      +A    +  A+A V     V+   G+ + + + +  IL+    V+ V ++D
Sbjct: 15  VFLLILLTVLAVHCALPSASAQV----KVDAINGQVLELTVGEGTILRFDEPVESVFLAD 70

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
              ADV V SP  +Y++    G  N+I +  D      + + +  +    E +       
Sbjct: 71  TAIADVRVVSPGVVYIYATKTGDTNLIALSADQMTRGTVQVRVSGNPRAAEQSALALQPT 130

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           + + + +     V  G  R + ++     + +++          ++  +  +N   IAG 
Sbjct: 131 TRVDISLFGGQYVGTGQTRNVGEAMDMESVLQSY----------STPDRPALNNTTIAGS 180

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +QV ++V  AEV R+ L + G   S+  +S   S       G     + G  ++    D 
Sbjct: 181 NQVNIRVRFAEVARNELTRFGIDWSLFVNSGSFSFGIVRTGGASNEDDTG-IAIGARGDH 239

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +   +L AL+    +  LAEP +TA++GQ+ASF +GG+     V +  G   +    +G
Sbjct: 240 VNVNVLLDALQANGILTILAEPNITAVTGQTASFLAGGEIPVP-VPAGDGQIGIEYKQFG 298

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIV 369
           V L FTPT+L   RI L+++ EVS              +PS R+R+ADT VE+ SG T  
Sbjct: 299 VSLQFTPTLLPNNRIALQVRPEVSSVSQDSVVSISGLVVPSLRIRRADTAVEVGSGQTFA 358

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           +AGL +    Q     P++  +PILG LF++ RF R ETE+ I  TP+LV P + R++  
Sbjct: 359 IAGLFQRQESQTLNKTPVVGDVPILGELFKSKRFQRNETELVILITPYLVTPTSERNMKT 418

Query: 430 PDDH 433
           P D 
Sbjct: 419 PLDS 422


>gi|170022934|ref|YP_001719439.1| type II and III secretion system protein [Yersinia
           pseudotuberculosis YPIII]
 gi|169749468|gb|ACA66986.1| type II and III secretion system protein [Yersinia
           pseudotuberculosis YPIII]
          Length = 423

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 195/436 (44%), Gaps = 35/436 (8%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              K+I + +    I+++  ++  V VS    AD  +    ++ ++ K  G A   L   
Sbjct: 14  ANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNK 73

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL- 163
           + + +    +L+   I      +R    DS I +  + ++ +L G   T +       + 
Sbjct: 74  NHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIANIV 133

Query: 164 ----SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               +     +   +  ++   + V+N + +   +QV +K+TI E+ +D  + IG   + 
Sbjct: 134 GEATASKKEKEREEHYQSSPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNS 193

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             S++G  +                       +  S  T++HA+      + LAEP L+ 
Sbjct: 194 IKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEPNLSV 234

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           +SG+ ASF  GG+     VS++    SV   ++G+ L+    V    RI + +  EVS  
Sbjct: 235 LSGEYASFLVGGEIPI--VSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSI 292

Query: 340 VIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
               N       PS R+RKA+TTVEL  G + +L GL+    ++  + IP +  +P+LGA
Sbjct: 293 DKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGA 352

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           LFRN++  R ++E+ + AT  LVKPV+ R +  PD  +      + FF   +  I   K 
Sbjct: 353 LFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTIERFF--NLTNIKDAKR 408

Query: 457 ASEVEGQNYKGAIGFI 472
             +   +++    GFI
Sbjct: 409 RKQ--AKDFLQKGGFI 422


>gi|148259497|ref|YP_001233624.1| type II and III secretion system protein [Acidiphilium cryptum
           JF-5]
 gi|146401178|gb|ABQ29705.1| type II and III secretion system protein [Acidiphilium cryptum
           JF-5]
          Length = 491

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 125/466 (26%), Positives = 198/466 (42%), Gaps = 37/466 (7%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
           P   + A    +   E  + + ++I      ++ +     +V V+DP    V   S  T+
Sbjct: 44  PAAASPARHATMRPAEAARARGLTIEQGSGRLITLKGSAANVFVADPGVVAVRPASAHTL 103

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDI---AHLEMTLRRFIADSNIRVEMVSDT 144
           ++FG   G   V +    G  +  L + +       A +     R    + + +   ++ 
Sbjct: 104 FVFGTAPGFTTVAVTDAQGHAVATLHVAVTPKTYPAAAIRAGATRSAPGARLSISSAANG 163

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           VV+ G V T     + ++ +               +  KV+N   +    QV LKV IA+
Sbjct: 164 VVVRGNVPTPVQDYQIMQQAHLIAG----------TGAKVVNQTEVRLPQQVALKVRIAQ 213

Query: 205 VRRDILKQIGFQHSITGSS-------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           + R I +Q+G      G+         G S     +         G ++    +   + +
Sbjct: 214 MSRTITQQLGINWQSAGNGISVGKFLFGFSALDVLNGSSPATPAAGSYNAGLSVGGGAID 273

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
           +VL AL        LAEPTLTA+SGQSASF  GG      V    G  +V    +GV L 
Sbjct: 274 SVLDALNSDNLAHILAEPTLTALSGQSASFIDGGSFPVP-VPGQNGQVTVQYKKFGVQLK 332

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV--------NAGDMPSYRVRKADTTVELPSGGTIV 369
           F P VL  G I L +Q  VS P             +  +PS   + A TTV + SG T+ 
Sbjct: 333 FRPVVLDNGSIILHVQPTVSSPTTQNAFQIAVAGTSIVVPSLSTQSASTTVVIGSGQTLA 392

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLS 428
           +AGLL +   Q  + +P L  +P+LGA FR+  +NR+E E+ I  TP+LVKPV     L 
Sbjct: 393 IAGLLSNSSNQTDKSVPGLGDMPVLGAAFRDDNYNRQEQELVILVTPYLVKPVNNAGQLM 452

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            PD+ +S  +  +    +R +   G +    + GQ      GFI +
Sbjct: 453 TPDEGWSPPNQIQRIVLHRDSG--GARREIVLPGQA-----GFILR 491


>gi|238782881|ref|ZP_04626910.1| Type II/III secretion system protein [Yersinia bercovieri ATCC
           43970]
 gi|238716304|gb|EEQ08287.1| Type II/III secretion system protein [Yersinia bercovieri ATCC
           43970]
          Length = 426

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 111/426 (26%), Positives = 196/426 (46%), Gaps = 30/426 (7%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V     K + I   +  I++   ++  V VS    AD  + +  ++ ++ K+ G   +IL
Sbjct: 14  VNKANAKSVYISPGESYIIKTEAEIDTVFVSSAAVADYELVNKNSIIVYAKSEGTTEIIL 73

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
                + +    IL+   I      +     DSNI ++ + D+ +L G+V + ++     
Sbjct: 74  FDDKHQVLAKKTILVNNIINAANKRVLIEYPDSNIDIDKIGDSYILTGIVESEEEKDTLA 133

Query: 162 ELSETFLSQ-----SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
            +    +       S R   +      ++N L +   +QV +K+TIAEV +D  + +G  
Sbjct: 134 TIVGEAIGSQKEKTSERQYLSTPDYAHIVNKLKLPQANQVNVKLTIAEVTKDFTENVGVD 193

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
            S  G + G  +    +  G                     T++HA+   +  R LAEP 
Sbjct: 194 WSTMGDAIGSFQFVKFNANG-------------------ISTLVHAINDESIARVLAEPN 234

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L+ +SG+SASF  GG+      S++  + +VT  ++G+ L+    V    RI + +  EV
Sbjct: 235 LSVLSGESASFLVGGEIPI--ASNTENSQTVTYKEFGIKLNIGAKVNEKKRIRILLNEEV 292

Query: 337 SEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           S      +       PS + RKA TT+EL  G + +L GL+ +  ++  + IP +  IPI
Sbjct: 293 SSIGKSFSMEGGDSYPSLKTRKAATTLELGDGESFILGGLISNSERESLKKIPFIGDIPI 352

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LGALFRN++  + +TE+ + AT  LVKPV+ +++  P D        + F F  + +I  
Sbjct: 353 LGALFRNAQTEQSQTELVVIATVNLVKPVSRKEIELP-DFMHTSTLERLFNFTHIMEIKR 411

Query: 454 PKEASE 459
            + A E
Sbjct: 412 ERMAKE 417


>gi|261251281|ref|ZP_05943855.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
 gi|260938154|gb|EEX94142.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
          Length = 441

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 195/442 (44%), Gaps = 43/442 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +S+       + +   +  V V++   AD  +     + ++G   G  +VI+    
Sbjct: 22  ASQLMSLDQGAAKTINLKRQIATVFVANQQIADYKIIDDNKVVVYGVGQGSTSVIVYDRG 81

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G ++ N ++++ + +  L+ T+     D N+ V  V D VVL G+V + +  Q+   L  
Sbjct: 82  GNEIYNAELVVNQSLRLLKQTIIARFPDENVVVSNVGDQVVLDGIVSSEEVKQKVYRLVG 141

Query: 166 TFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             L +  R                 +  +  +  +V+N L +   +Q+ +K+T+AEV   
Sbjct: 142 EMLKKERRRHTYELRDADGEEYDELDYTSRFTYDQVINHLKVLTTEQINVKLTVAEVSSS 201

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +S +G              GKFV++  DF+ + ++       V+ A      
Sbjct: 202 FLSELGVSYSDSGEP------------GKFVNKLLDFTAQDIVS------VISASGDDKI 243

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + LAEP L+ ISG+ ASF +GG+             S++  +YGV L     V     I
Sbjct: 244 GQVLAEPNLSVISGEQASFLAGGEIPIAV--RDEDGISISYKEYGVKLAMVAKVTDSENI 301

Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS              +P+ R R+A TTV L  G + VLAGLL  + ++    
Sbjct: 302 RLTLIPEVSSIDESNKTSTGLISVPTLRTRRAQTTVHLKDGQSFVLAGLLTSEEREALTK 361

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP L  IPILGALF ++  NR +TE+ I AT  LV PV    +  P   +    D +   
Sbjct: 362 IPFLGDIPILGALFSHTTTNRSKTELIIVATVNLVDPVESEQVKLP--SFKRTSDIERLL 419

Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
              ++++  P+    +E   + 
Sbjct: 420 RIDLSELNEPELEGTIEQGGFN 441


>gi|238897548|ref|YP_002923227.1| putative tight adherance operon protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465305|gb|ACQ67079.1| putative tight adherance operon protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 459

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 111/498 (22%), Positives = 210/498 (42%), Gaps = 73/498 (14%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
           + QR    +  IF F + P  A                         + +   + ++++ 
Sbjct: 6   FYQRCIKLIFFIFGFFTLPGSA------------------NAANTGDLFMSEGESLVIKK 47

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
             ++  V VS+P  AD  +    T+ ++ K  G++       +     +  ++++  I  
Sbjct: 48  KQNIDTVFVSNPAVADYKIVDHNTVIIYAKAEGKSEFTFFEPNQNISYHATVMVDNIIKV 107

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-------- 174
           +   +R    +S +++E +  + +L GM  T +     V +    +     N        
Sbjct: 108 VSDKIRMLYPESQVQIEKIGKSYLLTGMAPTEEVRDNIVRMVGESIQSPKSNDKDTVSVR 167

Query: 175 ------------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
                                N   ++++N + +   +QV +K++I EV ++    IGF+
Sbjct: 168 LDISDKGDASETTENVNSSLTNKVYERLINQIQLPVSNQVNVKLSIVEVSKEFKDNIGFE 227

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
            +  G+ S    +F AD                         +++AL+  +  R LAEP 
Sbjct: 228 WANLGTFSFHKFNFTAD---------------------RITHLVNALQDDSIARVLAEPN 266

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L+ +SG+SASF  GG+  Y     ++   S+   ++G+ L  T  V    R+ + +  E+
Sbjct: 267 LSVLSGESASFLVGGEIPYVKDRDASNRASIDFKEFGIKLSVTAKVNENKRVKVMLSEEI 326

Query: 337 SEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           S  +    A    MPS + R+A+TTVEL  G + VL GL+  + Q+  + +P +  IPIL
Sbjct: 327 SSVIGNTKAEEFTMPSLKKRRANTTVELADGESFVLGGLMNQEEQEALQKVPFIGDIPIL 386

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
           G+ FR+++ N    E+ + AT  LVKP+  ++++ P D       A+    + +  I   
Sbjct: 387 GSFFRHTKTNNRSIELIVVATVNLVKPIPSKEITLP-DFMKTSSIARFLNLSVIKNISQK 445

Query: 455 KEASEVEGQNYKGAIGFI 472
           KEA     + + G  GFI
Sbjct: 446 KEA-----EAFLGKGGFI 458


>gi|87199101|ref|YP_496358.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134782|gb|ABD25524.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 539

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 124/445 (27%), Positives = 209/445 (46%), Gaps = 55/445 (12%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
               + ++I + +  ++ VP  + DV V+D   ADV V S   +Y+FGK  G+  +    
Sbjct: 48  TSPARTVTISIGRGELVTVPGRMADVFVADERVADVQVKSTNQLYVFGKAGGETTIYASN 107

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
             G  + + ++ +  ++  ++  L   + ++ I V  +++TV+L G V   +D+  A  L
Sbjct: 108 AKGDVVWSANVRVGNNLDSIDQMLHLAMPEARINVATMNNTVLLTGTVAAPEDAAEAERL 167

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
            + F+ +             V++ L +A   QV+L V  AEV R +++ +G   +    +
Sbjct: 168 VKAFVGEKT----------NVISRLKMATPLQVSLHVKFAEVSRSLVRTLGVNLTTIDGT 217

Query: 224 SG----------------------------------------PSKSFAADFGGKFVSEGG 243
            G                                         +   A        S G 
Sbjct: 218 GGIKFGIGQGSTTGSVATNRNLPFGVGTSSTSGYILDPTGATSNYVSATGTSVAASSSGT 277

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +  G L        L A E    + TL+EP LTAISG++A F +GG++    VS   G
Sbjct: 278 TIAGMGKLLGLDLLAALDAGETIGLVTTLSEPNLTAISGETAEFLAGGEYPIP-VSQGLG 336

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTT 359
            TS+    YGV L +TPTVL+ GRI +R++ E SE        +++ ++P+  VR+A+TT
Sbjct: 337 TTSIEYKKYGVSLAYTPTVLANGRISIRVRPEASELSSTGALKLDSVEIPALTVRRAETT 396

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VEL SG + ++AGLL++  Q     +P    IPILG+LFR++ + + ETE+ I  TP+LV
Sbjct: 397 VELGSGQSFMIAGLLQNGAQNALTKMPGAGDIPILGSLFRSTSYKKGETELVIVVTPYLV 456

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFF 444
            PV   D+  P D +   ++ +   
Sbjct: 457 NPVNANDIKLPTDGFQSPNEIQRLL 481


>gi|323495637|ref|ZP_08100708.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
           pilus assembly [Vibrio sinaloensis DSM 21326]
 gi|323319272|gb|EGA72212.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
           pilus assembly [Vibrio sinaloensis DSM 21326]
          Length = 440

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/426 (24%), Positives = 185/426 (43%), Gaps = 40/426 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++G  +   +    ++  V +S+P  AD  V     + +FGK VG  +++    +   +
Sbjct: 25  VNLGEGEAKAITTKQEIASVFISNPEIADYQVVDKNKLVVFGKKVGSVSLLAFDDNSNTI 84

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           ++  +++ + + H++  ++    + +I +  + + VVL G V + +       L    L 
Sbjct: 85  VSRKLVVNKSLIHIQQQIQLRYPNISISLYNLEEQVVLAGKVPSEKIRDEINILVGELLE 144

Query: 170 QS---------------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           +                            ++N + +A   QV +K++IAEV +  L++ G
Sbjct: 145 KEYEDHKIEWKIGTETYEMEFMTRRHYLGIVNNIEVATTKQVNVKLSIAEVSQSFLEEFG 204

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            Q+  +G  +G       +F                       +V+ AL   T  + LAE
Sbjct: 205 VQYGSSGQGAGTFVDQLVNFSAS-----------------DIVSVITALGDDTVGQVLAE 247

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L+ ISG+SA F  GG+    T+    G T+V   ++G+ L     VL   +I L +  
Sbjct: 248 PNLSVISGESAHFLVGGELPVVTI--IDGGTNVLYKEFGIRLEMMAKVLEDDKIKLSLLP 305

Query: 335 EVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           EVS            +P+ + R+A TTVEL  G + VL GLL  + ++    +P +  +P
Sbjct: 306 EVSSIDSQYQNERYSLPALKTRRARTTVELGDGQSFVLGGLLSTEDRESLRRVPFIGDVP 365

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           ILGALFR+S   R  TE+ I AT  LV PV    +  P          + FF   V+  Y
Sbjct: 366 ILGALFRHSETVRNRTELVIVATVNLVNPVNPSQIQLPT--MKRTTTMQRFF--NVDYSY 421

Query: 453 GPKEAS 458
            P   +
Sbjct: 422 TPASKT 427


>gi|318604223|emb|CBY25721.1| type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 410

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 114/402 (28%), Positives = 197/402 (49%), Gaps = 33/402 (8%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +++   ++  V VS    AD  +    ++ ++ K  G A  IL   +   +    IL++ 
Sbjct: 1   MIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDN 60

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------- 171
            I      +R    +S+I +  + D+ +L G V T +  +    +    +          
Sbjct: 61  TITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIGSEKTIASNS 120

Query: 172 -----GRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
                G NQY NS    +V+N + + G +QV +K+TIAEV +D  + IG   S  G+ SG
Sbjct: 121 KKDSDGNNQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSG 180

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
             + F  +   KF ++G                ++HA+   +  R LAEP L+ +SG+SA
Sbjct: 181 SFQFFKLNGSNKFNAKG-------------ISALVHAINDGSIARVLAEPNLSVLSGESA 227

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGV 343
           SF  GG+     V+++  +T +T   +G+ L+    V +  RI +++  EVS    V  +
Sbjct: 228 SFLVGGELP--LVNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNI 285

Query: 344 NAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           + GD  PS+R RKA TT+EL  G + +L GL+    ++  + IP +  IPILGA F N+ 
Sbjct: 286 DGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFSNAE 345

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
             + +TE+ + AT  LV+PV+ +++  P  ++      + FF
Sbjct: 346 TRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFF 385


>gi|209809170|ref|YP_002264708.1| type II/III secretion system protein [Aliivibrio salmonicida
           LFI1238]
 gi|208010732|emb|CAQ81123.1| type II/III secretion system protein [Aliivibrio salmonicida
           LFI1238]
          Length = 445

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 116/398 (29%), Positives = 192/398 (48%), Gaps = 36/398 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I++       + V  D+  V +SDP  AD  V   R + ++GK++G ++V++ G  G  +
Sbjct: 30  INMSEGGAKTISVEQDISSVFLSDPKIADYQVIDKRKIVIYGKSIGSSSVLIFGEKGNTL 89

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N  I++ + +A ++  +     D+ + +  V + VVL+G V T Q+      +    L 
Sbjct: 90  SNKKIMVNKSLATIQQYISVKYPDTAVDIFNVGEQVVLNGTVSTEQEKDEINGIVGELLE 149

Query: 170 QSGRNQYANS---------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           +S ++                      + V+N + +A   QV +K++IAEV +  L+QIG
Sbjct: 150 KSRKDFQFEQDMEDQDYEIQFMERHEYEGVVNNIVVATTKQVNVKISIAEVSQSFLEQIG 209

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            Q+  +           A   G FV     FS           +V+ A+   +  + LAE
Sbjct: 210 IQYGTS-----------ASVPGVFVQPLTSFS------SSDIMSVITAIGNDSVGQILAE 252

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L+ ISG+SASF  GG+    T      +T+V   ++GV L     V    +I L +  
Sbjct: 253 PNLSVISGESASFLVGGELPVVTTV--NNSTNVVYKEFGVRLDLMAKVKKDDKITLSLVP 310

Query: 335 EVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           EVS        ++ ++P+ + R+A TTVEL  G + VL GLL  + ++  + +P +  IP
Sbjct: 311 EVSSLDTQYENDSYNLPALKTRRARTTVELGDGQSFVLGGLLNSEDKESLQKVPFIGDIP 370

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           ILGALFRNS   R +TE+ I AT  LV+P+    +  P
Sbjct: 371 ILGALFRNSVTQRNKTELIIVATVNLVQPIHPSQIQLP 408


>gi|283787693|ref|YP_003367558.1| tight adherence secretin RcpA [Citrobacter rodentium ICC168]
 gi|282951147|emb|CBG90838.1| putative tight adherence secretin RcpA [Citrobacter rodentium
           ICC168]
          Length = 482

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 123/476 (25%), Positives = 210/476 (44%), Gaps = 53/476 (11%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
            R   TM+S  L ++      LP    A                 + +   +        
Sbjct: 8   SRHVLTMLSHLLLTAVLLSFSLPAAAGA-----------------LYMKHGQSRNFHFTG 50

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           D+  + +SDP  AD  V + + + ++ KN G  ++I+ G +   +L   I ++  ++ + 
Sbjct: 51  DLDTIFISDPRVADYKVVNNKNIIVYAKNTGTTDLIVYGRNNTVLLKHSISVDPFLSDIN 110

Query: 125 MTLRRFIADSNIRVE------MVSDTVV--LHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
             + R    ++I V         +D VV  ++G V   +      +L  + ++ SG  + 
Sbjct: 111 QRVARLFPGNSIEVTRFMGGATAADKVVYIINGSVTDEESMDAIYQLVGSIVNSSGGEEK 170

Query: 177 ANSSSKK-------------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
            N S+ K                   V+N + +   +QV + +T+ EV +     +G   
Sbjct: 171 DNKSANKRVVDSKINTDLIEKKKYANVINKMQLVASNQVNVHLTVVEVSKTFTDALGIDW 230

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           S    SS  +   + +  G F   G     KG  D  +  TV++A++  +  R +A+P L
Sbjct: 231 SSLTLSSIVNGGASINNPGTFNLLG----FKGGFDAKNISTVINAIQNDSVARIMAQPNL 286

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           T +SG++A F  GG+    + +S    T+VT  +YG+ L     V    +I L +  E+S
Sbjct: 287 TVLSGETADFLVGGEIPILSKNSDNEGTTVTYKEYGIKLSIAAKVEKKSKIKLSLSNEIS 346

Query: 338 EPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                   NA  +P+   R++ +T+EL  G +  + GLL +   +    +P +  IPILG
Sbjct: 347 SISGAYSFNAYSIPTLTTRRSSSTIELADGDSFAIGGLLTEKDYETLGKVPFIGDIPILG 406

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNK 450
           AL RNS   RE+TE+ I AT  LVKPVA  RD+  P   Y+   + K FF   V+K
Sbjct: 407 ALARNSNTQREKTELVIFATVNLVKPVASNRDIVLP--EYNKTSNNKLFFNVGVDK 460


>gi|293391332|ref|ZP_06635666.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|32452623|gb|AAP43985.1| RcpA [Aggregatibacter actinomycetemcomitans]
 gi|290951866|gb|EFE01985.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 460

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 184/427 (43%), Gaps = 25/427 (5%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV+          +  S+      ++Q    +  + VS P  AD  +    +  ++ K  
Sbjct: 17  AVLGAMSSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNSFIIYAKEE 76

Query: 95  GQANVILIGHDGKQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           G+  V   G DG+ + +  + ++     IA     L+    ++N+ V+ V    V+ G  
Sbjct: 77  GRTEVTAFGVDGRPLTSDTVNVDSVVTSIADTNKQLKSHFPNTNLSVKKVGKAYVIEGKA 136

Query: 152 RTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           R+ ++S     +            ET L +             V++  NIA   Q+ +K+
Sbjct: 137 RSQEESDEVRRIVGEALGNGRKITETKLGEDALPFLDKYHYDGVVDNANIADTTQINVKL 196

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           ++ EV + + + +G   S     SGP       FGG F    G       LD       +
Sbjct: 197 SVVEVNKKLSEAMGINWSHVAG-SGPLLGGNFGFGGGFNGNQGVL----RLDAKGISAFI 251

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
           +AL+  +  + LAEP ++ +SG++A    GG+  +       G+ ++   ++G+ L    
Sbjct: 252 NALDNQSNGKVLAEPNISMLSGETADILVGGEIPFAQ-RDKDGSPTIIYKEFGIKLAVAA 310

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            +    RI L +   VS      N    G++P +  RKA +  E+ +G + ++ GL   +
Sbjct: 311 KLQKNDRIRLALDQSVSTIAGNYNFEGVGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +    +PLL  IPILG+ FRN+   R++ E+ I AT  +VKPV  +D+  PD  +   
Sbjct: 371 DLEGINKVPLLGDIPILGSFFRNATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKT 428

Query: 438 DDAKAFF 444
              + FF
Sbjct: 429 GTMERFF 435


>gi|121534343|ref|ZP_01666167.1| type II and III secretion system protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307113|gb|EAX48031.1| type II and III secretion system protein [Thermosinus
           carboxydivorans Nor1]
          Length = 408

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 105/397 (26%), Positives = 180/397 (45%), Gaps = 30/397 (7%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ +N+  +L     VQ V V++P  ADV+V S   + + GK  G   + +    G+  
Sbjct: 29  LTVAVNQSRVLGFSG-VQRVAVANPEIADVLVVSGTEVLVVGKAPGLTTMHVWTEAGR-- 85

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
              ++ +  D A +   ++  +    IRV  V+ TV+L G V T Q   RA +L+  +  
Sbjct: 86  ATYEVEVGVDDAKVAGEIKSILGYDGIRVSKVNRTVILEGAVDTQQQKARAEKLAAVY-- 143

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                        KV++LL +    QV ++  + E+ R  +K++G +   +  + G    
Sbjct: 144 -----------GDKVVSLLEVLRPVQVKIEAKVIEINRQKIKELGIKWGNSADTPGTFIF 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +    K     GD               L AL ++ A + L++P +  +SG  AS   
Sbjct: 193 GQSALNSKVGDVFGDLG-----GYADINAQLSALVKSGAAKVLSQPNVVTLSGDKASIMI 247

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--- 346
           GGQ     V+      ++   DYG+ L   P V   G I  R++ EVS            
Sbjct: 248 GGQIPVP-VAQDNNKITIEWKDYGIKLDIAPEVNGDGLIQSRVKAEVSSLDYNSANSIKL 306

Query: 347 ----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
               ++P  R+RKA+T + L SG T+ + GL+  +  +    +P+L  +P+LG LFR++ 
Sbjct: 307 GAGMEIPPVRLRKAETAIALSSGQTMAIGGLIATETSKDVVKVPMLGDLPVLGHLFRSTS 366

Query: 403 FNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVED 438
           F R ETE+ +  TP LV P   +   SR    ++ E+
Sbjct: 367 FRRGETELLVLITPSLVNPGEYLPATSREMKEFAQEN 403


>gi|317491683|ref|ZP_07950118.1| type II and III secretion system protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920117|gb|EFV41441.1| type II and III secretion system protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 467

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 113/451 (25%), Positives = 208/451 (46%), Gaps = 46/451 (10%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
           + +++ +   +  ++QV  ++  + +S P  AD  +   R + ++ K+ G+ ++I    +
Sbjct: 38  RAQELYMDAGESQVIQVNGNIDTIFISAPKVADYEIIGERGVMVYAKSEGKTDLIAFDKN 97

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G Q++   ++++  ++ L+  +   + DS I ++ +  T +L G V T +D  R  ++  
Sbjct: 98  GDQLVKTTLVVDPILSSLQKKVSSLVPDSQITLQKMGKTYILSGSVATEEDRDRVYQIVG 157

Query: 166 TFLSQSGRN---------------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
             +  +                               ++V+N L +   +QV +K+++ E
Sbjct: 158 EGVGATRTTNKKEVANTNGGSGGNGENSNSWLDEVVYQEVINQLKLPMTNQVNVKLSVVE 217

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V +     +G        S G                 G F      +  +  +++HA+ 
Sbjct: 218 VTKTFSDNVGIDWGTISGSGGNIT-------------PGTFRFV-KFNADTLSSLVHAIS 263

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  R LAEP L+ +SG+SA F  GG+    T  SS   ++V   D+G+ L+    V S
Sbjct: 264 NDSVARVLAEPNLSVLSGESAEFLVGGEVPVVT--SSANGSNVQYKDFGIKLNVGAKVSS 321

Query: 325 PGRIGLRIQTEVSEP--VIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
             RI + +  EVS        NAGD  P+++ R+A TTVEL  G + +L GL+ ++ ++ 
Sbjct: 322 NKRIRVTLGEEVSNVDSTYSTNAGDSFPAFQTRRAKTTVELADGESFLLGGLISNNEREE 381

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P +  +PILGALFRN++  R   E+ + AT  LVKPV MRD+  P D       ++
Sbjct: 382 LSRLPFIGDVPILGALFRNAKTERSRGELVVVATVNLVKPVTMRDIVMP-DFQRTSTLSR 440

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
              F+ ++ +   K A E   Q      GFI
Sbjct: 441 FLNFDAISNLRDRKLAQEFVEQG-----GFI 466


>gi|220922532|ref|YP_002497834.1| type II and III secretion system protein [Methylobacterium nodulans
           ORS 2060]
 gi|219947139|gb|ACL57531.1| type II and III secretion system protein [Methylobacterium nodulans
           ORS 2060]
          Length = 479

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 129/471 (27%), Positives = 201/471 (42%), Gaps = 57/471 (12%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
           ++ + +NK   ++V     D+L+     A+V+  S +T+Y+ GK VG  NV L+  + K 
Sbjct: 16  RVRVPVNKSQTMRVVAPFSDILIGASKIAEVIPLSDQTLYILGKEVGTTNVSLVDANKKV 75

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           +  +D+ +  D  ++   +        +R     D  VL G               +   
Sbjct: 76  IGVVDVEVGLDAGNIGAKVLGGSGARGVRFTTEGDKAVLTGTAE------------DAVA 123

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPS 227
           +       +N +   VMN+  +    QV LKV   E+ R   + +G +      S +G S
Sbjct: 124 ADRAVALASNLAPGGVMNMTTVRSTQQVMLKVRFIEIDRTAGRDLGVRWEGTNRSVAGRS 183

Query: 228 KSFAADFGGKFVSEGGDF---------SVKGVL-------------------DRFSFETV 259
            + AA       + GG+          +V G                     +    +  
Sbjct: 184 GTVAATPEALTTAPGGNGIGLLSNAIPAVAGAALSTVAAPQFGQFAARLINSNSAKVDLF 243

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVV 315
           + ALE     R LAEP L A SGQ A F +GG++   T SSS        +VT  ++GV 
Sbjct: 244 ISALETQGLARRLAEPNLVASSGQPAEFLAGGEYPIPTASSSGALGVPTITVTFKEFGVR 303

Query: 316 LHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLA 371
           L FTPTVLS G I L+++ EVS  +P I VN G   +P    R+A T +E+  G +  +A
Sbjct: 304 LTFTPTVLSNGLINLQLEPEVSEIDPAISVNTGLVTVPGLSKRRARTNIEMRDGQSFAIA 363

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD-LSRP 430
           GLL+   ++  E +P L  IP+LGALF +  F + +TE+ +  TP LVKP      L+ P
Sbjct: 364 GLLQAVNEKNLEQLPWLGSIPVLGALFSSKEFRQRDTELVVIVTPHLVKPSKPGQPLATP 423

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY-------KGAIGFIYK 474
            D     +DA  F   +               Q          G+ G + K
Sbjct: 424 LDTRMPTNDADYFLGGQTELPKSKNPGKPSRLQELISAEGAAIGSYGHVVK 474


>gi|307133496|dbj|BAJ19008.1| RcpA [Aggregatibacter actinomycetemcomitans]
          Length = 460

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 100/415 (24%), Positives = 181/415 (43%), Gaps = 25/415 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            +  S+      ++Q    +  + VS P  AD  +    T  ++ K  G+  V   G DG
Sbjct: 29  AQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADG 88

Query: 107 KQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
           + + +  + ++     IA     L+    ++N+ V+ V    V+ G  R+ ++S     +
Sbjct: 89  RPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRI 148

Query: 164 S-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                       ET L +             V++  NIA   Q+ +K+++ EV + + + 
Sbjct: 149 VGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEA 208

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           +G   S     SGP       FGG F    G       LD       ++AL+  +  + L
Sbjct: 209 MGINWSHVAG-SGPLVGGNFGFGGGFNGNQGVL----RLDAKGISAFINALDNQSNGKIL 263

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           AEP ++ +SG++A    GG+  +       G+ ++   ++G+ L     +    RI L +
Sbjct: 264 AEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLAL 322

Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
              VS      N    G++P +  RKA +  E+ +G + ++ GL   +  +    +PLL 
Sbjct: 323 DQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLG 382

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
            IPILG+ FR++   R++ E+ I AT  +VKPV  +D+  PD  +      + FF
Sbjct: 383 DIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKTGTMERFF 435


>gi|307548787|dbj|BAJ19109.1| RcpA [Aggregatibacter actinomycetemcomitans]
 gi|307548802|dbj|BAJ19123.1| RcpA [Aggregatibacter actinomycetemcomitans]
          Length = 460

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 100/415 (24%), Positives = 181/415 (43%), Gaps = 25/415 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            +  S+      ++Q    +  + VS P  AD  +    T  ++ K  G+  V   G DG
Sbjct: 29  AQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADG 88

Query: 107 KQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
           + + +  + ++     IA     L+    ++N+ V+ V    V+ G  R+ ++S     +
Sbjct: 89  RPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRI 148

Query: 164 S-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                       ET L +             V++  NIA   Q+ +K+++ EV + + + 
Sbjct: 149 VGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEA 208

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           +G   S     SGP       FGG F    G       LD       ++AL+  +  + L
Sbjct: 209 MGINWSHVAG-SGPLVGGNFGFGGGFNGNQGVL----RLDAKGISAFINALDNQSNGKVL 263

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           AEP ++ +SG++A    GG+  +       G+ ++   ++G+ L     +    RI L +
Sbjct: 264 AEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLAL 322

Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
              VS      N    G++P +  RKA +  E+ +G + ++ GL   +  +    +PLL 
Sbjct: 323 DQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLG 382

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
            IPILG+ FR++   R++ E+ I AT  +VKPV  +D+  PD  +      + FF
Sbjct: 383 DIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVIYPD--FEKTGTMERFF 435


>gi|8096202|dbj|BAA96101.1| unnamed protein product [Actinobacillus actinomycetemcomitans]
          Length = 460

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 100/415 (24%), Positives = 181/415 (43%), Gaps = 25/415 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            +  S+      ++Q    +  + VS P  AD  +    T  ++ K  G+  V   G DG
Sbjct: 29  AQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADG 88

Query: 107 KQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
           + + +  + ++     IA     L+    ++N+ V+ V    V+ G  R+ ++S     +
Sbjct: 89  RPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRI 148

Query: 164 S-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                       ET L +             V++  NIA   Q+ +K+++ EV + + + 
Sbjct: 149 VGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEA 208

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           +G   S     SGP       FGG F    G       LD       ++AL+  +  + L
Sbjct: 209 MGINWSHVAG-SGPLVGGNFGFGGGFNGNQGVL----RLDAKGISAFINALDNQSNGKVL 263

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           AEP ++ +SG++A    GG+  +       G+ ++   ++G+ L     +    RI L +
Sbjct: 264 AEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLAL 322

Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
              VS      N    G++P +  RKA +  E+ +G + ++ GL   +  +    +PLL 
Sbjct: 323 DQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLG 382

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
            IPILG+ FR++   R++ E+ I AT  +VKPV  +D+  PD  +      + FF
Sbjct: 383 DIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKTGTMERFF 435


>gi|4768955|gb|AAD29695.1| rough colony protein A [Aggregatibacter actinomycetemcomitans]
          Length = 460

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 100/415 (24%), Positives = 181/415 (43%), Gaps = 25/415 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            +  S+      ++Q    +  + VS P  AD  +    T  ++ K  G+  V   G DG
Sbjct: 29  AQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADG 88

Query: 107 KQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
           + + +  + ++     IA     L+    ++N+ V+ V    V+ G  R+ ++S     +
Sbjct: 89  RPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGEARSQEESDEVRRI 148

Query: 164 S-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                       ET L +             V++  NIA   Q+ +K+++ EV + + + 
Sbjct: 149 VGEALGSGRKVTETKLGEDSLPFLDKYHYDDVVDNANIADTTQINVKLSVVEVNKKLSEA 208

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           +G   S     SGP       FGG F    G       LD       ++AL+  +  + L
Sbjct: 209 MGINWSHVAG-SGPLVGGNFGFGGGFNGNQGVL----RLDAKGISAFINALDNQSNGKVL 263

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           AEP ++ +SG++A    GG+  +       G+ ++   ++G+ L     +    RI L +
Sbjct: 264 AEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLAL 322

Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
              VS      N    G++P +  RKA +  E+ +G + ++ GL   +  +    +PLL 
Sbjct: 323 DQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLG 382

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
            IPILG+ FR++   R++ E+ I AT  +VKPV  +D+  PD  +      + FF
Sbjct: 383 DIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKTGTMERFF 435


>gi|323493934|ref|ZP_08099051.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546]
 gi|323311875|gb|EGA65022.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546]
          Length = 441

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 195/442 (44%), Gaps = 43/442 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +S+       + +   +  V V++   AD  +     + ++G   G  +VI+    
Sbjct: 22  ASQLMSLDQGAAKTINLKRQIATVFVANQQIADYKIIDENKVVVYGVGQGSTSVIVYDRG 81

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G ++ N ++++ + +  L+ T+     D N+ V  V D VVL G+V + +  Q+   L  
Sbjct: 82  GNEIYNAELVVNQSLRLLKQTIIARFPDENVVVSNVGDQVVLDGIVSSEEVKQKVYRLVG 141

Query: 166 TFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             L +  R                 +  +  +  +V+N L +   +Q+ +K+T+AEV   
Sbjct: 142 EMLKKERRRHTYELRDADGEEYDELDYTSRFTYDQVINNLKVLTTEQINVKLTVAEVSSS 201

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +S +G              GKFV++  DF+ + ++       V+ A      
Sbjct: 202 FLTELGVTYSDSGEP------------GKFVNKLLDFTAQDIVS------VISASGDDKI 243

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + LAEP L+ ISG+ ASF +GG+             S++  +YGV L     V     I
Sbjct: 244 GQVLAEPNLSVISGEQASFLAGGEIPIAV--RDEDGISISYKEYGVKLAMVAKVTDSENI 301

Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS              +P+ R R+A TTV L  G + VLAGLL  + ++    
Sbjct: 302 RLTLIPEVSSIDESNKTSTGLISVPTLRTRRAQTTVHLKDGQSFVLAGLLTSEEREALTK 361

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP L  IPILGALF ++  NR +TE+ I AT  LV PV    +  P   +    D +   
Sbjct: 362 IPFLGDIPILGALFSHTTTNRSKTELIIVATVNLVDPVESEQVKLP--SFKRTSDIERLL 419

Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
              ++++  P+    +E   + 
Sbjct: 420 RIDLSELNEPELEGTIEQGGFN 441


>gi|86144318|ref|ZP_01062650.1| Flp pilus assembly protein [Vibrio sp. MED222]
 gi|85837217|gb|EAQ55329.1| Flp pilus assembly protein [Vibrio sp. MED222]
          Length = 441

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 194/442 (43%), Gaps = 43/442 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +++       + +   +  V V++   AD  +     + ++G   G  +VI+    
Sbjct: 22  ASELMNLDQGAAKTINLKRQISTVFVANQEIADYKIIDENKVVVYGVGQGTTSVIVYDRG 81

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G ++ N ++++ + +  L+ TL     D N+ V  V D VVL G+V + +  Q+   L  
Sbjct: 82  GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNVGDQVVLDGIVGSEEIKQKINRLVG 141

Query: 166 TFLSQSGRNQY-----------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             L +  R                    A  +  +V+N L +   +Q+ +K+T+AEV   
Sbjct: 142 EMLKKDRRRAAYELKDADGEALDELEYTAKYNYDQVINNLKVLTTEQINVKLTVAEVSSS 201

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +S +G              G FV++  DF+ + ++       V+ A      
Sbjct: 202 FLTELGVTYSDSGDP------------GTFVNKLLDFTAQDIVS------VISASGDDKI 243

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            R LAEP L+ ISG+ ASF +GG+             +++  +YGV L     V     I
Sbjct: 244 GRVLAEPNLSVISGEQASFLAGGEIPIAI--RDEDGITISYKEYGVKLAMVAKVTDTENI 301

Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS              +PS R R+A TTV L  G + VLAGLL  + ++    
Sbjct: 302 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 361

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP+L  IPILGALF +S  NR +TE+ I AT  LV PV    +  P   +    D +   
Sbjct: 362 IPILGDIPILGALFSHSSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 419

Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
              ++++  P+  + +    + 
Sbjct: 420 RIDLSELDEPELENTINQGGFN 441


>gi|153833257|ref|ZP_01985924.1| general secretion pathway protein D [Vibrio harveyi HY01]
 gi|148870528|gb|EDL69443.1| general secretion pathway protein D [Vibrio harveyi HY01]
          Length = 456

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 112/406 (27%), Positives = 185/406 (45%), Gaps = 47/406 (11%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    + V   +  V +S+P  AD  V +  T+ +F   +GQ+ +I+ G D   +L
Sbjct: 34  SITLNDGQHISVKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQSRLIVYGIDEDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ D+  +   L+    D+ + V+ V + V + G+V + +       L  T L +
Sbjct: 94  SDRIIVDLDLTEIRRQLKFHFPDAKVTVQSVGEQVAVGGVVDSEETRDEIYRLVATLLGR 153

Query: 171 SGRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++                         N + K ++  + +A   QV +K+++A+V 
Sbjct: 154 EKTEKWDKTYKFEFKSDYAQYEEPEGMIFARNMTWKGIVERIQVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               K +G   S  GSS G                     V    D  +  T++ AL   
Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                LAEP LT +SG+SASF  GG+       S+    +++  ++G+ L  T  VLS  
Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPVIV--STNNNVNISFKEFGIKLDLTAKVLSQD 312

Query: 327 RIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I +++  EVSE    V A    +P    R+A TTVEL  G + +L GL+     +  + 
Sbjct: 313 KIRMQLAPEVSEVESYVEAAGVKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           IP +  IPILGA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 373 IPFVGDIPILGAAFRKATTERKRTELIIVATVNLVEPIKPKDVQLP 418


>gi|312116090|ref|YP_004013686.1| type II and III secretion system protein [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221219|gb|ADP72587.1| type II and III secretion system protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 519

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 115/441 (26%), Positives = 205/441 (46%), Gaps = 42/441 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + LN+   ++V     + LV++   ADVV  +  ++ + GK +G   + L+  D + +
Sbjct: 74  VRVVLNRSENVKVEYPFTEALVTNSDIADVVPLTNASINILGKKIGNTRLSLLDQDKRVI 133

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
             +DI +  D+  L   +R   + SN+RV  V+  +++ G         RA+ L+E F  
Sbjct: 134 GIVDIEVSHDVDMLRRVMRDNPSFSNLRVAAVNGRIMIAGQASDAVALSRALALAEQF-- 191

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK------------------ 211
                     +  +V N + +A   QV L+V   E  R++ +                  
Sbjct: 192 ----------APGQVTNAMTVASPQQVMLEVRFIEASRNLARGVGVNVSGGGRYAGGTTG 241

Query: 212 --QIGFQHSITGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETVLHALERA 266
              +  + SIT  S+G + +  +D      S     G  + + +      +  + ALE  
Sbjct: 242 VETLKEKSSITSDSTGITTNLISDLAAGLGSNLVPFGAMTGRVIGGSAPIDVTIRALESQ 301

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              R LAEP L A+SG +ASF +GG+  +  V+ +    +     +G+ L FTPTVL+  
Sbjct: 302 GLARRLAEPNLVALSGDTASFLAGGEFPFP-VAGTNNTITTEFKKFGIGLAFTPTVLARR 360

Query: 327 RIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +I L+I+ EVSE        +   ++P   VR+A TTVEL  G +  +AGL++       
Sbjct: 361 QINLKIEPEVSEIDYSAAVKIGNVEVPGLSVRRASTTVELRDGQSFAIAGLMQGFHNADT 420

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHYSVEDDAK 441
             +P +  +PILGAL R++ F ++ET++ I  TP LV+P+   D    P  +    +D +
Sbjct: 421 RQLPWIGDVPILGALTRSTSFQKKETDLVIIVTPCLVQPMVPGDAQGSPLANRRPGNDEE 480

Query: 442 AFFFNRVNKIYGPKEASEVEG 462
            F   +  ++   +   ++ G
Sbjct: 481 FFIAGK-QEVQTSRPRQDLTG 500


>gi|86159249|ref|YP_466034.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775760|gb|ABC82597.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 487

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 125/456 (27%), Positives = 210/456 (46%), Gaps = 54/456 (11%)

Query: 29  IKEANAAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
              A   V  +  D E+G  + +S+   +  +L V   +  + V++P  AD+ V +P  +
Sbjct: 17  AAAAQDVVPTMRIDREVGAARSMSLEAGQNRLLVVSDQIGRIAVANPDVADLKVVTPYQV 76

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
            L  K +G  ++ L   D   ++ + + + R++  L   L+   A   I V    D VV+
Sbjct: 77  LLTAKGIGSTDLTLWDRDNHPLV-IALQVTRNLEGLRKQLKELFAGEKIEVSSAGDLVVI 135

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V  ++  +R  E++    +             KV NL+ ++G+ QV L+V  AEV R
Sbjct: 136 SGQVSDVRIPERVAEVARLHAT-------------KVANLVQVSGQQQVQLEVRFAEVGR 182

Query: 208 DILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVL-------------- 251
             L+++G                  +  + G F++   + ++ G                
Sbjct: 183 TGLREMGVNFFHKSDDGKRVGGMTGNRTYPGDFLNTQSNPAIPGTGPRGLWGPGMPPDVP 242

Query: 252 ---------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                           +F F  +L+ LE++   +TLAEPTL A+SGQ A+F +GG+    
Sbjct: 243 NPAFNNAFSFFLSQGGQFPFSVMLNLLEQSNLAKTLAEPTLVAMSGQEAAFLAGGELPIP 302

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352
             S + G T+V    +G+ L FTPTV+    I LR++ EVS+      + V    +P   
Sbjct: 303 LAS-TFGQTAVEWKKFGIQLRFTPTVIGD-AIHLRLKAEVSDLDPTTAVTVGGTTIPGLV 360

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+++TT+ L  G +  +AGL+ D ++     +P+L  IPILGALFR+  + R+ETE+ +
Sbjct: 361 SRQSETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAYQRDETELLV 420

Query: 413 AATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFN 446
             T  L KPVA  +L   P D   +   DA  F   
Sbjct: 421 VVTARLAKPVAPHELPPLPTDFENNDPSDAALFLLG 456


>gi|197123317|ref|YP_002135268.1| type II and III secretion system protein [Anaeromyxobacter sp. K]
 gi|196173166|gb|ACG74139.1| type II and III secretion system protein [Anaeromyxobacter sp. K]
          Length = 484

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 126/456 (27%), Positives = 210/456 (46%), Gaps = 54/456 (11%)

Query: 29  IKEANAAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
              A   V  +  D E+G  + +S+   +  +L V   +  + V++P  AD+ V +P  +
Sbjct: 17  AAAAQDVVPTMRIDREVGAARSMSLEAGQNRLLVVSDQIGRIAVANPDVADLKVVTPYQV 76

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
            L  K +G  ++ L   D   ++ + + + R++  L   L+   A   I V    D VV+
Sbjct: 77  LLTAKGIGSTDLTLWDRDNHPLV-VALQVTRNLEGLRKQLKELFAGEKIDVSSAGDLVVI 135

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V  ++  +R  E++    S             KV NL+ ++G+ QV L+V  AEV R
Sbjct: 136 SGQVSDVRIPERVAEVARLHAS-------------KVANLVQVSGQQQVQLEVRFAEVGR 182

Query: 208 DILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVL-------------- 251
             L+++G                  +  + G F++   + ++ G                
Sbjct: 183 TGLREMGVNFFHKSDDGKRVGGMTGNRTYPGDFLNTQSNPAIPGTGPRGLWGPGLPPDVP 242

Query: 252 ---------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                           +F F  +L+ LE++   +TLAEPTL A+SGQ A+F +GG+    
Sbjct: 243 NAAFNNAFSFFLSQGGQFPFSVMLNLLEQSNLAKTLAEPTLVAMSGQEAAFLAGGELPIP 302

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352
             S + G T+V    +G+ L FTPTV+    I LR++ EVS+      + V    +P   
Sbjct: 303 LAS-TFGQTAVEWKKFGIQLRFTPTVIGD-AIHLRLKAEVSDLDPTTAVTVGGTTIPGLV 360

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+++TT+ L  G +  +AGL+ D ++     +P+L  IPILGALFR+  + R+ETE+ +
Sbjct: 361 SRQSETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAYQRDETELLV 420

Query: 413 AATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFN 446
             T  L KPVA  +L   P D   +   DA  F   
Sbjct: 421 VVTARLAKPVAPHELPPLPTDFENNDPSDAALFLLG 456


>gi|148974885|ref|ZP_01811865.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3]
 gi|145965394|gb|EDK30643.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3]
          Length = 441

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/442 (25%), Positives = 195/442 (44%), Gaps = 43/442 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +++       + +   +  V V++   AD  +     + ++G   G  +VI+    
Sbjct: 22  ASELMNLDQGAAKTINLKRQISTVFVANQEIADYKIIDENKVVVYGVGQGTTSVIVYDRG 81

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G ++ N ++++ + +  L+ TL     D N+ V  + D VVL G+V + +  Q+   L  
Sbjct: 82  GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNIGDQVVLDGIVGSEEIKQKINRLVG 141

Query: 166 TFLSQSGRNQY-----------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             L++  R                    A  +  +V+N L +   +Q+ +K+T+AEV   
Sbjct: 142 EMLNKERRRAAYELKDADGEALDEIEYTAQYNYDQVINNLKVLTTEQINVKLTVAEVSSS 201

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +S +G              G FV++  DF+ + ++       V+ A      
Sbjct: 202 FLTELGVTYSDSGEP------------GTFVNKLLDFTAQDIV------AVISASGDDKI 243

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            R LAEP L+ ISG+ ASF +GG+             +++  +YGV L     V     I
Sbjct: 244 GRVLAEPNLSVISGEQASFLAGGEIPIAV--RDEDGITISYKEYGVKLAMVAKVTDTENI 301

Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS              +PS R R+A TTV L  G + VLAGLL  + ++    
Sbjct: 302 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 361

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP+L  IPILGALF ++  NR +TE+ I AT  LV PV    +  P   +    D +   
Sbjct: 362 IPILGDIPILGALFSHTSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 419

Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
              ++++  P+  + +    + 
Sbjct: 420 RIDLSELDEPELENTINQGGFN 441


>gi|218676249|ref|YP_002395068.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
 gi|218324517|emb|CAV25991.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
          Length = 446

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 194/442 (43%), Gaps = 43/442 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +++       + +   +  V V++   AD  +     + ++G   G  +VI+    
Sbjct: 27  ASELMNLDQGAAKTINLKRQISTVFVANQEVADYKIIDENKVVVYGVGQGATSVIVYDRG 86

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G ++ N ++++ + +  L+ TL     D N+ V  V D VVL G+V + +  Q+   L  
Sbjct: 87  GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNVGDQVVLDGIVGSEEIKQKINRLVG 146

Query: 166 TFLSQSGRNQY-----------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             L +  R                    A  +  +V+N L +   +Q+ +K+T+AEV   
Sbjct: 147 EMLKKDRRRAAYELKDADGEALDELEYTAKYNYDQVINNLKVLTTEQINVKLTVAEVSSS 206

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +S +G              G FV++  DF+ + ++       V+ A      
Sbjct: 207 FLTELGVTYSDSGQP------------GTFVNKLLDFTAQDIVS------VISASGDDKI 248

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            R LAEP L+ ISG+ ASF +GG+             +++  +YGV L     V     I
Sbjct: 249 GRVLAEPNLSVISGEQASFLAGGEIPIAVRDQD--GITISYKEYGVKLAMVAKVTDTENI 306

Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS              +PS R R+A TTV L  G + VLAGLL  + ++    
Sbjct: 307 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 366

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP+L  IPILGALF +S  NR +TE+ I AT  LV PV    +  P   +    D +   
Sbjct: 367 IPILGDIPILGALFSHSSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 424

Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
              ++++  P+  + +    + 
Sbjct: 425 RIDLSELDEPELENTINQGGFN 446


>gi|312883308|ref|ZP_07743034.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368924|gb|EFP96450.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 440

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/425 (27%), Positives = 197/425 (46%), Gaps = 35/425 (8%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              + ++I  +    + +   +  V + +PT AD  +     + +FG  VG  +VI+ G 
Sbjct: 26  SAAEILNIDQDSAKTINLKNSISTVFLVNPTIADYKIIDDNKLVIFGVGVGSTSVIVYGK 85

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
            G ++ N ++++ + +  L+ T+        I V  + D VVL G+V + +  +    L 
Sbjct: 86  GGSEIYNTELIVNKSLRLLKQTILARFPGETISVSNIGDQVVLDGVVSSERVKKAVSRLV 145

Query: 165 ETFLSQ----------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
              L +          SG N     +  +++N + +   +Q+ +K+T+AEV    L +IG
Sbjct: 146 GEMLKKQRNVQKYSDASGGNTQLEYNYHEIINNMKVLSTEQINVKITVAEVASSFLNEIG 205

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
             +S  G  +G           KFV++   FS K ++       V+ A+   +    LAE
Sbjct: 206 VSYSEMGGEAG-----------KFVNKITHFSAKDIV------AVISAVGNESVGHVLAE 248

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L+ ISG+ ASF  GG+             S++  +YGV L     V     I L +  
Sbjct: 249 PNLSVISGEKASFLVGGEIPIGV--RDDKGVSISYKEYGVKLSMIAKVADSENIRLSLFP 306

Query: 335 EVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVS      V  V     PS + R+A+TTV+L  G + VLAGLL+ + ++    +P L  
Sbjct: 307 EVSTIDENHVTKVGQLTAPSLQTRRAETTVQLKDGQSFVLAGLLRSEERESLSKVPYLGD 366

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           IPI+GALF +S+ +R +TE+ I AT  LV PV    +  P   +    D +      +++
Sbjct: 367 IPIIGALFSHSKTDRSKTELIIVATVNLVTPVDPDKVKLP--GFHRTSDIERLLNIDLSE 424

Query: 451 IYGPK 455
           +  PK
Sbjct: 425 LTEPK 429


>gi|320158383|ref|YP_004190761.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus MO6-24/O]
 gi|319933695|gb|ADV88558.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus MO6-24/O]
          Length = 441

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 109/452 (24%), Positives = 198/452 (43%), Gaps = 43/452 (9%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
            I  + + +   + +++       + +   +  V V DP  AD  +     + ++G   G
Sbjct: 12  TIGFASLSVNSNELMNLNQGSAKTISLKRQISTVFVGDPEIADYKIIDETKVVVYGVGQG 71

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             +VI+    G ++ N ++++ + +  ++ TL     D +I +  V + VVL G+V + +
Sbjct: 72  ATSVIVYDRAGNELYNAEVVVNKSLRLVKQTLIARFPDESINITNVGEQVVLDGVVSSDE 131

Query: 156 DSQRAVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTL 198
              +        L ++                   +  A      ++N L +   +Q+ +
Sbjct: 132 IKTQIYRTVGEMLKKNSTRDTFTLKDANGDEVDSLDYTATYIYDNIINNLKVLTTEQINV 191

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           K+T+AEV    L ++G  +S +G              G+FV++  DF+ + ++       
Sbjct: 192 KLTVAEVSSSFLSELGVSYSDSGQ------------AGRFVNKLLDFTAQDIV------A 233

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           V+ A       R LAEP L+ ISG++ASF  GG+             +++  +YGV L  
Sbjct: 234 VITASGDDQIGRVLAEPNLSVISGETASFLVGGEIPIAI--RDEDGITISYKEYGVKLSM 291

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTVELPSGGTIVLAGLL 374
              V     I L +  EVS             ++P+ R RKA TTV+L  G + VLAGLL
Sbjct: 292 VAKVTDSENIRLSLLPEVSSIDEENKTANGLINVPALRTRKAQTTVQLKDGQSFVLAGLL 351

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
             + ++    IP+L  IPILGALF +++ N+ +TE+ I AT  LV PV   D+  P   +
Sbjct: 352 TSEERESLSKIPVLGDIPILGALFSHTKSNQTKTELIIVATVNLVDPVKAEDIKLP--SF 409

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
               D +      ++ +  P+    +    + 
Sbjct: 410 RRTSDIERLLRIDLSSMNEPELEDTLNKGGFN 441


>gi|328470518|gb|EGF41429.1| rough colony protein RcpA [Vibrio parahaemolyticus 10329]
          Length = 447

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 118/431 (27%), Positives = 198/431 (45%), Gaps = 38/431 (8%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             +  G+ +S+       + V  ++  V V+D   AD  V +   + ++G   G  ++I 
Sbjct: 19  ASVSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGKLVIYGIGRGATSIIA 78

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
               G ++ N ++++ + +  L+ T+     D +I++  + + +V+ G+V + +   +  
Sbjct: 79  YDRAGNEIYNAEVVVNKSLRLLKQTIIARYPDEDIKLTNIGEQIVIDGVVSSEEIKDKVY 138

Query: 162 ELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
                 L +S +                 +  A    + ++N L +   DQ+ +K+T+AE
Sbjct: 139 RHVGEMLKKSKQRNTFELSGANGESVDPLDYTATYVFEDIINNLKVLTTDQINVKLTVAE 198

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V    L ++G  ++ T   S           G+FV++  DF+ + ++       V+ A  
Sbjct: 199 VSSSFLTELGVSYAETNGKSIGG-------AGQFVNKILDFTAEDIV------AVISASG 245

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + LAEP L+ ISG+SASF  GG+             SVT  +YGV L     V  
Sbjct: 246 NDSIGQVLAEPNLSVISGESASFLVGGEIPITV--RDNDGISVTYKEYGVKLSMVAKVTD 303

Query: 325 PGRIGLRIQTEVSEP--VIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
              I L +  EVS      GVN+G   +PS R RKA TTV+L  G + VLAGLL  + Q+
Sbjct: 304 SENIRLSLLPEVSSIDKTNGVNSGLVSVPSLRTRKAQTTVQLKDGQSFVLAGLLTSEEQE 363

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L  IPILGALF  +   R +TE+ I AT  LV PV   D+  P   +    D 
Sbjct: 364 SLAKIPYLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKETDIKLP--KFKRTSDL 421

Query: 441 KAFFFNRVNKI 451
           +      ++K+
Sbjct: 422 ERLLKLDLSKV 432


>gi|84385684|ref|ZP_00988715.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01]
 gi|84379664|gb|EAP96516.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01]
          Length = 456

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 105/406 (25%), Positives = 186/406 (45%), Gaps = 47/406 (11%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    +Q+   +  V +++P   D  + +  T+ +F   +GQ+ +I+ G DG  +L
Sbjct: 34  SITLNDGQHIQLKSPIGQVFINNPDIVDYKIINDNTIVVFANAIGQSRLIVYGIDGDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ D+  +   L+    ++ ++++ V + V + G+V +         L  T L +
Sbjct: 94  SDRIIVDLDLTDIRRQLKFHFPNAKVKIQSVGEQVAVSGLVDSEATRDDIYRLVATLLGR 153

Query: 171 SGRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++                         N + + ++  + +A   QV +K+++A+V 
Sbjct: 154 EKTEKWDKTVKLEFKSDSSNYEEPESFVFARNMTWEGIIERIEVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               + +G   S  GSS G                     V    D  +  T++ AL   
Sbjct: 214 ESFGQTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                LAEP LT +SG+SASF  GG+      +S+    +++  ++G+ L  T  VLS  
Sbjct: 255 QIAEVLAEPNLTVLSGESASFLVGGEVPVIVTTSNN--VNISFKEFGIKLDLTAKVLSQD 312

Query: 327 RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           RI +++  EVSE    +    +  P    R+A TTVEL  G + VL GL+     +  + 
Sbjct: 313 RIRMQLAPEVSEVEGYIETAGIKVPQLASRRAMTTVELADGDSFVLGGLMSSADLEKMQK 372

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           IP +  IP+LGA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 373 IPFVGDIPVLGAAFRKATTERKRTELIIVATVNLVEPMKPKDIQLP 418


>gi|26000712|gb|AAN75208.1| RcpA [Aggregatibacter actinomycetemcomitans]
          Length = 460

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 99/415 (23%), Positives = 180/415 (43%), Gaps = 25/415 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            +  S+      ++Q    +  + VS P  AD  +    T  ++ K  G+  V   G DG
Sbjct: 29  AQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADG 88

Query: 107 KQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
           + + +  + ++     IA     L+    ++N+ V+ V    V+ G  R+ ++S     +
Sbjct: 89  RPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRI 148

Query: 164 S-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                       ET L +             V++  NIA   Q+ +K+++ EV + + + 
Sbjct: 149 VGEALGSGRKVTETKLGEDSLPFLDKYHYDDVVDNANIADTTQINVKLSVVEVNKKLSEA 208

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           +G   S     SGP       FGG F    G       LD       ++AL+  +  + L
Sbjct: 209 MGINWSHVAG-SGPLVGGNFGFGGGFNGNQGVL----RLDAKGISAFINALDNQSNGKVL 263

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            EP ++ +SG++A    GG+  +       G+ ++   ++G+ L     +    RI L +
Sbjct: 264 PEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLAL 322

Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
              VS      N    G++P +  RKA +  E+ +G + ++ GL   +  +    +PLL 
Sbjct: 323 DQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLG 382

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
            IPILG+ FR++   R++ E+ I AT  +VKPV  +D+  PD  +      + FF
Sbjct: 383 DIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVIYPD--FEKTGTMERFF 435


>gi|149178342|ref|ZP_01856934.1| probable type II secretion system protein [Planctomyces maris DSM
           8797]
 gi|148842868|gb|EDL57239.1| probable type II secretion system protein [Planctomyces maris DSM
           8797]
          Length = 546

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 107/437 (24%), Positives = 190/437 (43%), Gaps = 38/437 (8%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI--GHDG 106
           ++S+      IL++ +DV  V ++DP+K +VV    + + + GK+ G   + L       
Sbjct: 67  ELSVQQRHSKILKMKMDVFRVAIADPSKIEVVAFGSQEVEVIGKDTGTTTMTLWLGDEAN 126

Query: 107 KQMLNLDILIERD----------IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            Q+L++ + +E D              +  +  F  +S I++   +D +++ G  R  Q+
Sbjct: 127 PQILSVQVKVEGDNSIEDLRRMEYGEFQKMINEFFPNSKIQLVPFADKLIVRGQARDEQE 186

Query: 157 SQRAVELSET-----------------FLSQSGRNQYANSS---SKKVMNLLNIAGEDQV 196
           + + + +                    F   +  + +   +      V+++L + GE Q+
Sbjct: 187 AVQIITIIRARSGSGGGQGGGGGGGSLFADGAAADPFPGGAMLPEATVIDMLKVPGEKQI 246

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            LKV IA++ R   +             G ++ F      + +  GG   V         
Sbjct: 247 MLKVRIAQIDRSAARTASTNIIAQSGDFGWAQLFTG--VAQQLGNGGTGLVTASFTSSDV 304

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGV 314
           +  + AL +    + LAEP L  ISG++A+F SGG+    TV    GA   + T   +G 
Sbjct: 305 DVFISALAQNGYAKILAEPNLVTISGRTANFISGGEFAVPTVVGVGGAQAATTTFKGFGT 364

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L F PTVL   RI L++    S     + +G +    V+   TTV+L  G  + +AGLL
Sbjct: 365 QLSFLPTVLDKDRIRLQVSPSFSTVNPALTSGGVLGVNVQAVTTTVDLREGQVLAIAGLL 424

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDD 432
           ++  +     +P +  IP++G LF N   +R+ETE+ I  +P LV P+   D     P  
Sbjct: 425 QEQQRGDLNRVPFIGDIPLVGPLFSNKGVSRDETELIILISPELVHPMEPEDAPTVLPGM 484

Query: 433 HYSVEDDAKAFFFNRVN 449
             +   D   FF N + 
Sbjct: 485 EVTEPGDVDFFFMNNIE 501


>gi|28900576|ref|NP_800231.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836379|ref|ZP_01989046.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810]
 gi|260877521|ref|ZP_05889876.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034]
 gi|260901740|ref|ZP_05910135.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037]
 gi|308095456|ref|ZP_05906034.2| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466]
 gi|308125917|ref|ZP_05777993.2| rough colony protein RcpA [Vibrio parahaemolyticus K5030]
 gi|28808956|dbj|BAC62064.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633]
 gi|149750281|gb|EDM61026.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810]
 gi|308087133|gb|EFO36828.1| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466]
 gi|308090527|gb|EFO40222.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034]
 gi|308108872|gb|EFO46412.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037]
 gi|308114419|gb|EFO51959.1| rough colony protein RcpA [Vibrio parahaemolyticus K5030]
          Length = 447

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 118/431 (27%), Positives = 198/431 (45%), Gaps = 38/431 (8%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             +  G+ +S+       + V  ++  V V+D   AD  V +   + ++G   G  ++I 
Sbjct: 19  ASVSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGKLVIYGIGRGATSIIA 78

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
               G ++ N ++++ + +  L+ T+     D +I++  + + +V+ G+V + +   +  
Sbjct: 79  YDRAGNEIYNAEVVVNKSLRLLKQTIIARYPDEDIKLTNIGEQIVIDGVVSSEEIKDKVY 138

Query: 162 ELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
                 L +S +                 +  A    + ++N L +   DQ+ +K+T+AE
Sbjct: 139 RHVGEMLKKSKQRNTFELSGANGESVDPLDYTATYVFEDIINNLKVLTTDQINVKLTVAE 198

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V    L ++G  ++ T   S           G+FV++  DF+ + ++       V+ A  
Sbjct: 199 VSSSFLTELGVSYAETNGKSIGG-------AGQFVNKILDFTAEDIV------AVISASG 245

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + LAEP L+ ISG+SASF  GG+             SVT  +YGV L     V  
Sbjct: 246 NDSIGQVLAEPNLSVISGESASFLVGGEIPITV--RDNDGISVTYKEYGVKLSMVAKVTD 303

Query: 325 PGRIGLRIQTEVSEP--VIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
              I L +  EVS      GVN+G   +PS R RKA TTV+L  G + VLAGLL  + Q+
Sbjct: 304 SENIRLSLLPEVSSIDKTNGVNSGLVSVPSLRTRKAQTTVQLKDGQSFVLAGLLTSEEQE 363

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L  IPILGALF  +   R +TE+ I AT  LV PV   D+  P   +    D 
Sbjct: 364 SLAKIPYLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKETDIKLP--KFERTSDL 421

Query: 441 KAFFFNRVNKI 451
           +      ++K+
Sbjct: 422 ERLLKLDLSKV 432


>gi|319941902|ref|ZP_08016223.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804555|gb|EFW01425.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis
           3_1_45B]
          Length = 485

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 125/431 (29%), Positives = 215/431 (49%), Gaps = 36/431 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +S+ L +   L     +  V V+ P+ A   V   R + +FG   G+ +++++G DG+ +
Sbjct: 1   MSVSLYQGKALSFNEQIGAVFVAQPSIASYQVVGNRKVVVFGSYPGKTSLMVLGTDGRTL 60

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL- 168
            N  + +  D++ +EM L+       +++  ++D V + G V T Q++   V   +  L 
Sbjct: 61  YNGLVEVAYDVSSMEMALKSSFPKLKLQLVALNDGVAVRGKVETAQEAANVVAFLDAMLQ 120

Query: 169 ----------------SQSGRNQYANSSS---------KKVMNLLNIAGEDQVTLKVTIA 203
                            Q G+ + + +++          K++N L +   +QVT++V  A
Sbjct: 121 VNPQQAQMAAADVSAAGQEGQQEKSGAATGTGTLGARIGKIINQLTVTTPNQVTVRVRFA 180

Query: 204 EVRRDILKQIGFQH--SITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVLDRFSFETV 259
           EV R +  Q+GF+   S +GS  G +   A +        S G  F    +  RF+F ++
Sbjct: 181 EVNRKLSDQLGFKWKGSYSGSRGGITFGSADNPIISNPNNSLGHLFDPATMAARFTFGSL 240

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
             A+     +  LAEP LT +SG++ASF +GGQ  +++ S   G   +   DYGV+L  T
Sbjct: 241 FDAMASEELVSILAEPNLTVVSGETASFLAGGQIPFQS-SDGDGGFDIEFKDYGVLLSIT 299

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PT+LS  RI LR++ EVSE              P + VR+A++T+EL SG +  +AGLLK
Sbjct: 300 PTILSGNRISLRLRPEVSERSDSNGIQFMGSTQPGFIVRRAESTIELASGQSFAIAGLLK 359

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           +D       IP ++ +PI+GAL R+  F R ETE+ I AT ++  P +    + P++   
Sbjct: 360 NDFSNTVNKIPGIADLPIIGALARSKAFERGETELVIVATAYISTP-SGEPYTIPNEEMY 418

Query: 436 VEDDAKAFFFN 446
           V    + +F +
Sbjct: 419 VPTIFERYFMD 429


>gi|262275469|ref|ZP_06053279.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Grimontia hollisae CIP 101886]
 gi|262220714|gb|EEY72029.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Grimontia hollisae CIP 101886]
          Length = 454

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 104/406 (25%), Positives = 182/406 (44%), Gaps = 31/406 (7%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           +      I++G      L+    +  V +SDP  AD  V     + +FG+ +G   +I+ 
Sbjct: 25  QASAAGVINLGTGDARSLEFNAVIGTVFISDPDIADYQVIDSNKLVVFGRKLGTTTLIVF 84

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             D + + +  I++ + +  +E  L     D ++ V  + + VVL G+V T ++      
Sbjct: 85  DEDSQTLSHRKIVVNQSLTKIEQILAIRYPDVDVSVLNMGEQVVLTGVVPTQKEKNEIYA 144

Query: 163 LSETFLSQS----------------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           +    LS+                   +  A  + + ++N L +    QV +K+TIAEV 
Sbjct: 145 VVGELLSKKFVERRTQWKTSFDEEFDIDFMARRTYEGLVNNLEVTVTKQVNVKLTIAEVN 204

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
             ++ ++G +                 F G      G     G     +    + A+   
Sbjct: 205 SSLINELGIKWG---------TILEDGFAGNGQFFKGITGFGG--RTTNVAAYISAINDD 253

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + L+EP ++ ISG++ASF  GG+              +   ++G+ L     VL   
Sbjct: 254 NVGQVLSEPNVSVISGETASFLVGGEIPI--TYRIDDGYRIEYKEFGIGLDLAAEVLRDD 311

Query: 327 RIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I L +  +VS      G    D+PS++VR+A TT+EL  G + VLAGLL  + ++    
Sbjct: 312 KIKLSVMPQVSSVDNQYGDTLLDIPSFKVRRARTTLELGDGDSFVLAGLLSSEDEEALSK 371

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           IP +  +PILGALFRN+   R +TE+ I AT  LV+PV+  +++ P
Sbjct: 372 IPFIGDVPILGALFRNTSTTRRKTELVIVATVSLVEPVSSANITIP 417


>gi|86147184|ref|ZP_01065500.1| general secretion pathway protein D [Vibrio sp. MED222]
 gi|85835068|gb|EAQ53210.1| general secretion pathway protein D [Vibrio sp. MED222]
          Length = 439

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 117/417 (28%), Positives = 188/417 (45%), Gaps = 40/417 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
                ++   +     +  ++  V +S    AD  V     + +FGKN+G A+ I     
Sbjct: 20  AQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAK 79

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G+++ N  +L+ +    +E  +     D+ + V  + + VVL G+V   Q+     +L  
Sbjct: 80  GRELFNRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVG 139

Query: 166 TFLSQSGRNQYANSSSKK----------------VMNLLNIAGEDQVTLKVTIAEVRRDI 209
             L ++  +     S ++                V+N + I+   QV +K+TIAEV    
Sbjct: 140 ELLGKTANSTSFQMSDEESDDIDVGFMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSF 199

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           ++  G +    G+             G FV +   FS   ++       V+ AL   +  
Sbjct: 200 MQDFGIKMGSNGTP------------GIFVDQLTHFSASDIVS------VISALGTDSVG 241

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           + LAEP L+ ISG+ ASF  GG+    TV    GAT+V   ++GV L     VL   +I 
Sbjct: 242 QVLAEPNLSVISGEKASFLVGGELPVVTV--IDGATNVEYKEFGVRLELLAKVLRDDKIK 299

Query: 330 LRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           L +  EVS      ++   D+P+ R R+A TTVEL  G + VL GLL  + ++    IP 
Sbjct: 300 LALTPEVSSLDGSYSSDNFDLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPY 359

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +  IPI+GALFR++   R +TE+ I AT  LV+PV    +  P          K FF
Sbjct: 360 IGDIPIIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPT--MKKTSTLKRFF 414


>gi|163801677|ref|ZP_02195575.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
 gi|159174594|gb|EDP59396.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
          Length = 456

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 109/406 (26%), Positives = 184/406 (45%), Gaps = 47/406 (11%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    + V   +  V +S+P  AD  V +  T+ +F K VG + +++ G +   +L
Sbjct: 34  SITLNDGKHISVKQPIGKVFISNPDIADYKVINDTTLVVFAKGVGHSRLLVYGANEDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ D+  +   L+    D+ + V+ V + V + G+V + +       L    L +
Sbjct: 94  SDRIIVDLDLTQIRRQLKFHFPDAKVTVQSVGEQVAVSGVVDSEETRDAIYRLVANLLGR 153

Query: 171 SGRNQYANSS------------------------SKKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++ +SS                         + ++  + +A   QV +K+++A+V 
Sbjct: 154 EKTEKWESSSKRSFKSDHGTFEEPESMIFARNMTWEGIIEQIQVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               K +G   +  GSS G                     V    D  +  T++ AL   
Sbjct: 214 ESFGKTVGVDWNSVGSSVGGF-------------------VFDQFDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                LAEP LT +SG+SASF  GG+       S    T+++  ++G+ L     VLS  
Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPVII--SDANGTNISFKEFGIKLDLAAKVLSQD 312

Query: 327 RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I +++  EVSE    V A  +  P    R+A TTVEL  G + +L GL+     +  + 
Sbjct: 313 KIRMQLAPEVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           IP +  IPILGA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 373 IPFIGDIPILGAAFRRATTERKRTELIIVATVNLVEPIKPKDVHLP 418


>gi|258620803|ref|ZP_05715838.1| Flp pilus assembly protein [Vibrio mimicus VM573]
 gi|258587001|gb|EEW11715.1| Flp pilus assembly protein [Vibrio mimicus VM573]
          Length = 444

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 109/442 (24%), Positives = 190/442 (42%), Gaps = 42/442 (9%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + +++       + +   +  V V+D T AD  +     + ++G   G  +VI+    G
Sbjct: 23  AELMNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGG 82

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
            ++ N ++++ + +  L+ TL     D +I V  V D VVL G V + +   +   L   
Sbjct: 83  NEIYNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGE 142

Query: 167 FLS------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
            L                   +      A      V+N L +   +Q+ +K+TIAEV   
Sbjct: 143 MLKKNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSS 202

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +                  GKF ++  DF+ + ++       ++ A      
Sbjct: 203 FLSELGVSYG----------DIGGGDVGKFYNKLLDFTAQDIV------AIIAASGNDDI 246

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + LAEP L+ ISG++ASF  GG+         T   ++   +YG+ L     V     I
Sbjct: 247 GQVLAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENI 304

Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS          ++ + PS + RKA TTV+L  G + VLAGLL  + ++    
Sbjct: 305 RLSLLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRK 364

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP+L  IPILGALF +++ +R++TE+ I AT  LV PV    +  P   +    D +   
Sbjct: 365 IPILGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLL 422

Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
              ++ +  P+    +    + 
Sbjct: 423 RIDLSGVDEPELQRTINAGGFN 444


>gi|218708107|ref|YP_002415728.1| putative bacterial type II secretion system protein D; rcpA, CpaC
           [Vibrio splendidus LGP32]
 gi|218321126|emb|CAV17076.1| putative bacterial type II secretion system protein D; rcpA, CpaC
           [Vibrio splendidus LGP32]
          Length = 435

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 117/417 (28%), Positives = 188/417 (45%), Gaps = 40/417 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
                ++   +     +  ++  V +S    AD  V     + +FGKN+G A+ I     
Sbjct: 16  AQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAK 75

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G+++ N  +L+ +    +E  +     D+ + V  + + VVL G+V   Q+     +L  
Sbjct: 76  GRELFNRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVG 135

Query: 166 TFLSQSGRNQYANSSSKK----------------VMNLLNIAGEDQVTLKVTIAEVRRDI 209
             L ++  +     S ++                V+N + I+   QV +K+TIAEV    
Sbjct: 136 ELLGKTANSTSFQMSDEESDDIDVGFMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSF 195

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           ++  G +    G+             G FV +   FS   ++       V+ AL   +  
Sbjct: 196 MQDFGIKMGSNGTP------------GIFVDQLTHFSASDIVS------VISALGTDSVG 237

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           + LAEP L+ ISG+ ASF  GG+    TV    GAT+V   ++GV L     VL   +I 
Sbjct: 238 QVLAEPNLSVISGEKASFLVGGELPVVTV--IDGATNVEYKEFGVRLELLAKVLRDDKIK 295

Query: 330 LRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           L +  EVS      ++   D+P+ R R+A TTVEL  G + VL GLL  + ++    IP 
Sbjct: 296 LALTPEVSSLDGSYSSDNFDLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPY 355

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +  IPI+GALFR++   R +TE+ I AT  LV+PV    +  P          K FF
Sbjct: 356 IGDIPIIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPT--MKKTSTLKRFF 410


>gi|262164949|ref|ZP_06032687.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus VM223]
 gi|262027329|gb|EEY45996.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus VM223]
          Length = 444

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 109/442 (24%), Positives = 189/442 (42%), Gaps = 42/442 (9%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + +++       + +   +  V V+D T AD  +     + ++G   G  +VI+    G
Sbjct: 23  AELMNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGG 82

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
            ++ N ++++ + +  L+ TL     D +I V  V D VVL G V + +   +   L   
Sbjct: 83  NEIYNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGE 142

Query: 167 FLS------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
            L                   +      A      V+N L +   +Q+ +K+TIAEV   
Sbjct: 143 MLKKNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSS 202

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +                  GKF ++  DF+ + ++       ++ A      
Sbjct: 203 FLSELGVSYG----------DIGGGDVGKFYNKLLDFTAQDIV------AIIAASGNDDI 246

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + LAEP L+ ISG++ASF  GG+         T   ++   +YG+ L     V     I
Sbjct: 247 GQVLAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENI 304

Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS          ++ + PS + RKA TTV+L  G + VLAGLL  + ++    
Sbjct: 305 RLSLLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRK 364

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP+L  IPILGALF +++ +R++TE+ I AT  LV PV    +  P   +    D +   
Sbjct: 365 IPILGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLL 422

Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
              +  +  P+    +    + 
Sbjct: 423 RIDLTGVDEPELQRTINAGGFN 444


>gi|149176581|ref|ZP_01855194.1| putative outer membrane channel for pilus assembly CpaC
           [Planctomyces maris DSM 8797]
 gi|148844694|gb|EDL59044.1| putative outer membrane channel for pilus assembly CpaC
           [Planctomyces maris DSM 8797]
          Length = 590

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 194/456 (42%), Gaps = 37/456 (8%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGK-KISIGLNKVIILQVPVDVQDVLVS 72
           + L  S  +++     ++      +   V++   K K+ +      IL+ P  ++ V   
Sbjct: 17  VTLVCSLIALSAYAQDEQPAPPGASEPVVQVSSEKMKLEVTEKFSKILKFPGKIKRVDGF 76

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
           DPT   V   +P  + +     G   +++   +GK +  L+  +  D  HL+  LR    
Sbjct: 77  DPTVLSVSALTPNELRIQALVPGVTTLVITDENGK-VYTLETFVSGDARHLQAYLRELFP 135

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
            S++    V D+VVL G V   +     VE++E F                V+N + +AG
Sbjct: 136 TSSVTAIKVQDSVVLRGWVTEPEAITEMVEIAEQFF------------PNGVLNQMKLAG 183

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------PSKSFAADFGGKFVSEGG 243
             QV LKV I EV+R  ++Q+G        S           P       FGG       
Sbjct: 184 VQQVLLKVKIMEVQRSKIRQLGVNWLFLNQSGYAYSTPGTLVPITGINVPFGGPPALTAS 243

Query: 244 DFSVKGVLDRFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              + G    F        F+  + AL++   ++ LAEP L   SG+ A+  SGG+    
Sbjct: 244 QNLISGTSLGFGLVDGSSIFQAFIEALKKEALLKILAEPELVTTSGRPANLLSGGEFPI- 302

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352
            V  S G  ++   ++GV +   P VL  GR+ L +Q EVSE      + V    +P   
Sbjct: 303 LVPQSLGTVTIEWREFGVRMEAVPIVLGNGRLRLEVQPEVSERDFSNAVQVAGTTVPGLT 362

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           VR+A+T VE+  G T+V+AGL+           P L ++P++GA FR  R+   ETE+ I
Sbjct: 363 VRRANTAVEMNFGETMVIAGLISSRKTAETSKTPFLGELPVVGAAFRRVRYTEGETELVI 422

Query: 413 AATPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFN 446
             TP LV P+    +    P    +   D + +   
Sbjct: 423 MVTPELVSPLKSGQVPPGGPGLFTATPTDRELYLDG 458


>gi|156977409|ref|YP_001448315.1| Flp pilus assembly protein, secretin CapC [Vibrio harveyi ATCC
           BAA-1116]
 gi|156529003|gb|ABU74088.1| hypothetical protein VIBHAR_06196 [Vibrio harveyi ATCC BAA-1116]
          Length = 456

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 109/406 (26%), Positives = 184/406 (45%), Gaps = 47/406 (11%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI L+    + +   +  V +S+P  AD  V +  T+ +F   +GQA +I+ G D   +L
Sbjct: 34  SITLHDGQHISLKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQARLIVYGIDEDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ D+  +   ++    D+ + V+ + + V + G V + +       L  T L +
Sbjct: 94  SDRIIVDLDLTDVRRQIKFNFPDAKVTVQSIGEQVAVSGFVDSEETRDEIYRLVATLLGR 153

Query: 171 SGRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++                         N S + ++  + +A   QV +K+++A+V 
Sbjct: 154 EKIKKWDKADKFEFKSDYAQYEAPEGMIFARNMSWRGIVERIEVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               K +G   S  GSS G                     V    D  +  T++ AL   
Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                LAEP LT +SG+SASF  GG+       S+    +++  ++G+ L  T  VLS  
Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPVII--STNNNVNISFKEFGIKLDLTAKVLSKD 312

Query: 327 RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I +++  EVSE    V A  +  P    R+A TTVEL  G + +L GL+     +  + 
Sbjct: 313 KIRMQLAPEVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           IP +  IPILGA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 373 IPFVGDIPILGAAFRKAMTERKRTELIIVATVNLVEPIKPKDVQLP 418


>gi|238793622|ref|ZP_04637245.1| Type II/III secretion system protein [Yersinia intermedia ATCC
           29909]
 gi|238727037|gb|EEQ18568.1| Type II/III secretion system protein [Yersinia intermedia ATCC
           29909]
          Length = 425

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/439 (25%), Positives = 194/439 (44%), Gaps = 34/439 (7%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V     K + +   +  I++   ++  V VS    AD  +    ++ ++ K  G A  IL
Sbjct: 12  VNQAYAKPVYLSSGESYIIKTEEEIDTVFVSTAAIADYELVGKNSIIVYAKKEGTAEFIL 71

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
              D   M+   I++   I      ++    DSN+ +  + ++ +L G   + +      
Sbjct: 72  FNKDNHPMIKTTIMVNDIITSAYQRIKIEYPDSNVEINKIGNSYLLTGKAESEEAKDTIA 131

Query: 162 ELSETFLSQSGRN-----QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
            +    +++          + N +   V+N + +   +QV +K+TIAEV +D  + IG  
Sbjct: 132 AIIGEAINKKREQNREDQHFNNPNYLGVINKIKLPESNQVNVKLTIAEVTKDFSENIGVD 191

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
            S    +S  S  F                     +     T++HA+   +  R LAEP 
Sbjct: 192 WSSISEASVGSFKFL------------------KFNATGISTLVHAINDDSIARVLAEPN 233

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L+ +SG+SASF  GG+      +++  +T +    YG+ L+    V    RI + ++ EV
Sbjct: 234 LSVLSGESASFLVGGEIP--MFNTNQNSTIIKYKTYGIKLNIAAKVNEKNRIRISMEEEV 291

Query: 337 SEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           S      N       PS R RKA TT+EL  G + +L GL+    ++  + IP +  IPI
Sbjct: 292 SSVDKVFNVEGGNAYPSLRTRKAATTLELGDGESFILGGLISKSERESLKKIPFIGDIPI 351

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LGA FRN++  +++TE+ + AT  LV PVA +D+  P D        + F F  + ++  
Sbjct: 352 LGAFFRNAQTQKQQTELVVVATVSLVNPVAGKDVELP-DFMHTSTLERLFNFTHIIEVKR 410

Query: 454 PKEASEVEGQNYKGAIGFI 472
            K A E   +      GFI
Sbjct: 411 KKVAKEFLRKG-----GFI 424


>gi|89899603|ref|YP_522074.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89344340|gb|ABD68543.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 571

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 132/531 (24%), Positives = 223/531 (41%), Gaps = 96/531 (18%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
            ++        P ++A +     S V I     + I + K  +L+    V  +L+ +P  
Sbjct: 34  TAAKLPAPATAPARQALSTTGLCSRVNIAPA--VLIPVGKSTVLRPSSPVTRILLGNPEN 91

Query: 77  A-------------------------------DVVVHSPRTMYLFGKNVGQANVILIGHD 105
           A                               DV++ +P  +YL GK +G  NV+++  D
Sbjct: 92  ARAARPADTPEGKKEEGVKTPSVNTRPGVADVDVLLLAPTEVYLLGKTIGTTNVVMLDRD 151

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           G      D+++  D   L+  + + +  +  I+V    D++VL GMV   +   R  +L+
Sbjct: 152 GTC-TAFDVVVAMDTMALQAVIGQLLPIEKEIKVTSAFDSIVLSGMVSDTEALTRVTDLA 210

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------ 218
             ++           S+++V+N+L +    QV L+V +AE+ + +L Q G   S      
Sbjct: 211 NAYVRG---QDGGGQSNQRVVNMLEVGAPQQVMLEVKVAEISKSLLDQFGINFSRAYVPG 267

Query: 219 -----------------------ITGSSSGPSKSFAADFGGKFV---SEGGDFSV----- 247
                                   TG+S  P  S  A  GG      + GG+ +V     
Sbjct: 268 DGSMMRFLSGIFGGAVGAMGQISGTGASGVPFSSVDAVIGGTVPIAGASGGNVTVTYDAT 327

Query: 248 ----------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                       V  R      L+  +    ++ LAEPT+ AISGQ+ SF +GG+     
Sbjct: 328 TGRPTYTTSYGTVPGRGVSNATLNMQKNDGLVKVLAEPTIMAISGQTGSFLAGGKIFIPV 387

Query: 298 V---SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-------EPVIGVNAGD 347
                S    T++   ++GV + FTPTVL  GRI LR++ EVS       +   G     
Sbjct: 388 SKDNGSGGSTTTLEEKEFGVSVRFTPTVLGSGRINLRVRPEVSELNVAGVQISSGGLNAV 447

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +PS+  RKA+TTV+L  G +  + GL+K++        P L ++P++GALFR++ F  + 
Sbjct: 448 LPSFTSRKAETTVQLMDGQSFAIGGLIKNNTTTNINAFPFLGELPVVGALFRSTEFQTDR 507

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           +E+    TP LVKP+ +     P D Y     ++     ++        AS
Sbjct: 508 SELVFVITPRLVKPLPVG-YRLPTDGYVPPSRSELILGGKLEGQRTDDAAS 557


>gi|302391029|ref|YP_003826849.1| type II and III secretion system protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302203106|gb|ADL11784.1| type II and III secretion system protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 414

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/380 (27%), Positives = 179/380 (47%), Gaps = 27/380 (7%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
            + K + +G  K  +L+V VD++   V+DP  AD+V  S   + + GK+ G   + L   
Sbjct: 29  SQQKILQLGTGKSELLKV-VDLERAAVADPEVADIVTISQEELLINGKSEGTTTLHLWDQ 87

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
            G +  +  + + ++ A +   ++  I    ++V  V + ++L G VR     QR  +++
Sbjct: 88  KGHR--SYQVEVYKEEARVIKQIKELIGTDTVKVAKVEENIILSGKVRDQTQLQRVKKIA 145

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
             F              +KV+N L +    QV L   + E+ + + +++GF    T  +S
Sbjct: 146 GVF-------------GEKVINELQVTNSLQVLLAAQVFEIDKAVSEELGFDWYST--NS 190

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G  +S  A  G    S    F +      +   T L AL      + LA+P L   SGQ 
Sbjct: 191 GGVESGTATLGETTTSR---FGIGHYERLYQLRTKLKALIEDGKAKLLAKPKLVTKSGQK 247

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----P 339
           ASF  GG+    T  SS G  +V   +YGV     PTV   G++   +  +VS+      
Sbjct: 248 ASFNVGGEIPVVTADSS-GEQTVVWKNYGVQFEVEPTVTPTGKLETYLHPKVSQLDWANA 306

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           V   N+G +P+ +  +  T V +  G  + + GLL+    +  + IPLLS++PILG LF+
Sbjct: 307 VDYGNSGQLPAIKSSEVKTQVVIKDGAALAIGGLLQQYRSEDIKRIPLLSQLPILGELFK 366

Query: 400 NSRFNREETEIFIAATPFLV 419
           +  F  E++E+ I  TP ++
Sbjct: 367 SKSFREEKSELIILVTPKII 386


>gi|119566857|gb|ABL84265.1| RcpA [Yersinia ruckeri]
          Length = 438

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 109/433 (25%), Positives = 192/433 (44%), Gaps = 34/433 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + + +   +  I+ V  ++  +  S    AD  +    ++ ++ K  G A   L     
Sbjct: 32  AEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKKN 91

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           K +  + + +++ I+  +  +R    DS I +  + +  +L G  +T +  +   ++   
Sbjct: 92  KPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVAN 151

Query: 167 FLSQSGRNQ----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
            +      Q    Y   S   + N + I   +QV +K+TIAEV +D    IG   S  G+
Sbjct: 152 AIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIGN 211

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            SG       + G                      T++ A+   +  R LAEP L+ +SG
Sbjct: 212 VSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLSG 252

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           ++ASF  GG+     VS++    +V+  ++G+ L+    V    RI +++  EVS     
Sbjct: 253 ETASFLVGGELPI--VSTTQNTINVSYKEFGIKLNIGAKVSESKRIRVKLDEEVSSLDKM 310

Query: 343 VN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            N       P+ R RKA TTVEL  G + +L GL+  + ++  + IPL+  IPILGALFR
Sbjct: 311 FNVDGGSSYPALRTRKAGTTVELGDGESFILGGLISREDKENLKKIPLIGDIPILGALFR 370

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
            +    + +E+ + AT  LVKP+  +D+  PD  +      + FF    N  +  +   E
Sbjct: 371 KTGTQTKRSELVVIATVNLVKPMQSKDVGLPD--FMKTSTLERFF----NYTFIRESKQE 424

Query: 460 VEGQNYKGAIGFI 472
              + +    GFI
Sbjct: 425 KLAKKFLSQGGFI 437


>gi|85707702|ref|ZP_01038768.1| type II secretion system protein [Erythrobacter sp. NAP1]
 gi|85689236|gb|EAQ29239.1| type II secretion system protein [Erythrobacter sp. NAP1]
          Length = 576

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 126/477 (26%), Positives = 217/477 (45%), Gaps = 67/477 (14%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           +    +I I + +  ++QVP  + DV V++   ADV + S R +Y+FG++ G+  +    
Sbjct: 62  VSPSDEIVISIGRGELVQVPGTMTDVFVANENVADVQIKSQRQLYVFGRSGGETTIYASD 121

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVE 162
             G+ + + ++ +  +I  ++  L   + ++ + V  +  +TV+L G V   +D+  A  
Sbjct: 122 ARGEVIFSANVRVGSNIGSIDQMLALAMPEAQVNVATMGTNTVLLTGTVAAPEDAAEAER 181

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
           L   FL +             V+  L  A   QV L+V  AEV R +++ +    +   +
Sbjct: 182 LVTAFLGEQA----------NVITRLKTATPLQVNLQVKFAEVSRSLVRAVSGNLTTFDA 231

Query: 223 SSGPSKSFAAD------------------------------------------------- 233
           S+G  +                                                      
Sbjct: 232 STGGFRGAVGTGRTLGAGEFDFRNGPLGVGSGVQNPVVGPFIDPTTGLPILDANGNPLTF 291

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETV--LHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            G    S     ++ G+   F  + +  L   ER   I T+++P LTA+SG++A+F +GG
Sbjct: 292 TGPGIDSGTAGTTIAGLGRLFGLDALGALDLSERLGLITTISQPNLTALSGETATFLAGG 351

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGD 347
           +     +S   G  ++   ++GV L +TPTVLS GRI +R++ EVSE      + +N   
Sbjct: 352 EFPIP-ISQGLGNVAIEYRNFGVSLAYTPTVLSNGRISIRVRPEVSELSSQGAVTLNGFQ 410

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P+  +R+ +TTVEL SG + ++AGLL ++ Q   +  P L  +PILG LFR+  F R E
Sbjct: 411 VPALTIRRTETTVELGSGQSFMIAGLLSNNAQNALDKAPGLGDVPILGNLFRSRDFRRGE 470

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           TE+ I  TP+LVKPV   D++ P D Y   ++ + F   R N     +         
Sbjct: 471 TELVIVVTPYLVKPVNASDIALPTDGYHSANELEQFIGFRDNDGVSGERRPGPTAAE 527


>gi|238755450|ref|ZP_04616790.1| Type II/III secretion system protein [Yersinia ruckeri ATCC 29473]
 gi|238706291|gb|EEP98668.1| Type II/III secretion system protein [Yersinia ruckeri ATCC 29473]
          Length = 430

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/433 (25%), Positives = 192/433 (44%), Gaps = 34/433 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + + +   +  I+ V  ++  +  S    AD  +    ++ ++ K  G A   L     
Sbjct: 24  AEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKKN 83

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           K +  + + +++ I+  +  +R    DS I +  + +  +L G  +T +  +   ++   
Sbjct: 84  KPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVAN 143

Query: 167 FLSQSGRNQ----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
            +      Q    Y   S   + N + I   +QV +K+TIAEV +D    IG   S  G+
Sbjct: 144 AIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIGN 203

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            SG       + G                      T++ A+   +  R LAEP L+ +SG
Sbjct: 204 VSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLSG 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           ++ASF  GG+     VS++    +V+  ++G+ L+    V    RI +++  EVS     
Sbjct: 245 ETASFLVGGELPI--VSTTQNTINVSYKEFGIKLNIGAKVSESKRIRVKLDEEVSSLDKM 302

Query: 343 VN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            N       P+ R RKA TTVEL  G + +L GL+  + ++  + IPL+  IPILGALFR
Sbjct: 303 FNVDGGSSYPALRTRKAGTTVELGDGESFILGGLISREDKENLKKIPLIGDIPILGALFR 362

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
            +    + +E+ + AT  LVKP+  +D+  PD  +      + FF    N  +  +   E
Sbjct: 363 KTGTQTKRSELVVIATVNLVKPMQSKDVGLPD--FMKTSTLERFF----NYTFIRESKQE 416

Query: 460 VEGQNYKGAIGFI 472
              + +    GFI
Sbjct: 417 KLAKKFLSQGGFI 429


>gi|238789148|ref|ZP_04632936.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC
           33641]
 gi|238722680|gb|EEQ14332.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC
           33641]
          Length = 415

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 116/435 (26%), Positives = 202/435 (46%), Gaps = 34/435 (7%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              K + +   +  I+    ++  V VS    AD  +    ++ ++ KN G A   L  H
Sbjct: 7   ANAKPVYLSAGESYIINTQDEINTVFVSAAAIADYELIGKNSIIVYAKNEGVAEFTLFNH 66

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           D K +    +L+   I  +   ++    +SNI +  +  + +L G+V + +     V + 
Sbjct: 67  DHKAITKSVVLVNNIIPSVHRRIQAEYPESNIDINKIGSSYILTGLVESEEVRDTVVNII 126

Query: 165 ETFLSQSGRNQ----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
              +     N       N++   ++N + ++  +QV +K+TIAEV +D  + IG   S  
Sbjct: 127 GEAIGSKRINNDRHPVGNTNHTNIINKIKLSQSNQVNVKLTIAEVTKDFTENIGINWSTI 186

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G S G  + F              F+ KG+       T++HA+      R LAEP L+ +
Sbjct: 187 GESVGSFQLF-------------KFNAKGI------STLVHAINDNAIARVLAEPNLSVL 227

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           SG+ ASF  GG+     V+++   ++V+  ++G+ L+    V    RI + +  EVS   
Sbjct: 228 SGEDASFLVGGEIPI--VNTTQNGSAVSYKEFGIKLNIGAKVNDKKRIRIILNEEVSSIG 285

Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
              N       PS R RKA TT+EL  G + +L GL+  + ++  + IPL+  IP+LGA 
Sbjct: 286 KTFNINGGDSYPSIRTRKAATTLELGDGESFILGGLISRNERESLKKIPLMGDIPLLGAF 345

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           FRN++  + +TE+ + AT  LV PVA +++  PD  +      + FF    N  +  +  
Sbjct: 346 FRNAQTEQSQTELVVIATVNLVNPVAEKEVELPD--FMQTSTLERFF----NFTHIMEIK 399

Query: 458 SEVEGQNYKGAIGFI 472
            E   + +    GFI
Sbjct: 400 REKAARAFLRKGGFI 414


>gi|54309660|ref|YP_130680.1| Flp pilus assembly protein [Photobacterium profundum SS9]
 gi|46914098|emb|CAG20878.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           SS9]
          Length = 461

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 114/403 (28%), Positives = 181/403 (44%), Gaps = 45/403 (11%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           I LN    L+ P ++  V VS P   D  V   R + +F   +GQA VI+ G + + +L+
Sbjct: 34  ITLNDANNLEFPQEIGTVFVSQPDILDYKVIDNRKLVIFSNKIGQAKVIVYGKENQVLLS 93

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
               ++ +++ +   L+ +  D NI V  V + V + G V   +       +  T L + 
Sbjct: 94  QRYHVDINLSQVRRQLKLYYPDLNISVSSVGEQVAVRGTVNNEKQRDDIYRMVATLLGKK 153

Query: 172 GRNQY----------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
              +Y                       N   + ++  L IA   QV +K+++A+V ++ 
Sbjct: 154 EIERYNEAEKLKFVESGFEEANWVRYSKNYIWEGIVEGLVIAQAQQVNVKISVAQVTKEF 213

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            + IG   S  G S G                                TV++A+      
Sbjct: 214 NETIGVDWSTVGRSVGEFSFL-------------------KFKANDLSTVINAIGNDNIA 254

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             LAEP LT +SG+SASF  GG+       ++  +T+++  ++G+ L  +  VLS   I 
Sbjct: 255 EILAEPNLTVLSGESASFLVGGEVPVIV--TNDNSTNISFKEFGIKLELSAKVLSNKSIK 312

Query: 330 LRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           L++  EVS     V A  +  P    R+A TT++L  G + +L GL+  D  +    IPL
Sbjct: 313 LQLAPEVSAVEGYVKAAGIEVPQLSSRRAMTTIQLADGDSFMLGGLMSSDDIEEISKIPL 372

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           L  IPILGA FR S   R++TE+ I AT  LVKPV+  D+  P
Sbjct: 373 LGDIPILGAAFRKSSTTRKKTELVIVATVNLVKPVSPTDVRLP 415


>gi|90412176|ref|ZP_01220182.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           3TCK]
 gi|90326900|gb|EAS43285.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           3TCK]
          Length = 461

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 112/403 (27%), Positives = 183/403 (45%), Gaps = 45/403 (11%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           + LN    L+   ++  V VS P   D  V   R + +F   +GQA VI+ G D + +L+
Sbjct: 34  VTLNDANNLEFSQEIGTVFVSQPDILDYKVIDSRKLVIFSNKIGQAKVIVYGKDNQVLLS 93

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
               ++ +++ +   L+ +  D +I V  V + V + G V   +       +  T LS+ 
Sbjct: 94  QRYHVDINLSQVRRQLKLYYPDLSISVTSVGEQVAIRGTVNNEKQRDDIYRMVATLLSKK 153

Query: 172 GRNQY----------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
              +Y                       N + + ++  L +A   QV +K+++A+V ++ 
Sbjct: 154 EIERYNEAEKLKFVESGFEEANWVRYSKNYTWEGIIEGLVVAQAQQVNVKISVAQVTKEF 213

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            + IG   S  G S G                                TV++A+      
Sbjct: 214 NETIGVDWSTVGRSVGEFSFLE-------------------FKANDLSTVINAIGNDNIA 254

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             LAEP LT +SG+SASF  GG+       ++  +T+++  ++G+ L  +  VLS  +I 
Sbjct: 255 EILAEPNLTVLSGESASFLVGGEVPVIV--TNDNSTNISFKEFGIKLELSAKVLSNKKIK 312

Query: 330 LRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           L++  EVS     V A  +  P    R+A TT++L  G + +L GL+  D  +    IPL
Sbjct: 313 LQLAPEVSAVDGYVKAAGIEVPQLSSRRAMTTIQLADGDSFMLGGLMSSDDIEEISKIPL 372

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           L  IPILGA FR S   R++TE+ I AT  LVKPV+  D+  P
Sbjct: 373 LGDIPILGAAFRKSSTTRKKTELVIVATVNLVKPVSPTDVRLP 415


>gi|148975962|ref|ZP_01812751.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium
           SWAT-3]
 gi|145964707|gb|EDK29960.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium
           SWAT-3]
          Length = 456

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 108/406 (26%), Positives = 187/406 (46%), Gaps = 47/406 (11%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    +Q    +  V +++P+  D  + +  T+ +F  +VGQ+ +I+ G D   +L
Sbjct: 34  SITLNDGQHIQFKSPIGQVFINNPSIVDYKIINDNTLVVFANSVGQSRLIVYGVDDDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ ++  +   L+    D+ ++V+ V + V + G+V +         L  T L +
Sbjct: 94  SDRIIVDLNLTDIRRQLKFHFPDAKVKVQSVGEQVAVSGVVDSEATRDDIYRLVATLLGR 153

Query: 171 SGRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++                         N + + ++  + +A   QV +K+++A+V 
Sbjct: 154 DKTEKWDKTQKLEFKSDSSDYEEPESMVFARNMTWEGIIERIEVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               + +G   S  GSS G                     V    D  +  T++ AL   
Sbjct: 214 ESFGQTVGVDWSTVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                LAEP LT +SG+SASF  GG+      +SS    +++  ++G+ L  T  VLS  
Sbjct: 255 QIAEVLAEPNLTVLSGESASFLVGGEVPVIVSTSSN--VNISFKEFGIKLDLTAKVLSQD 312

Query: 327 RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I +++  EVSE    V A  +  P    R+A TTVEL  G + VL GL+     +  + 
Sbjct: 313 KIRMQLAPEVSEVEGYVEAAGIKVPQLASRRAMTTVELADGDSFVLGGLMSSADLEKMQK 372

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           IP +  IP+LGA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 373 IPFVGDIPVLGAAFRKATTERKRTELIIVATVNLVEPMKPKDIQLP 418


>gi|325108090|ref|YP_004269158.1| type II and III secretion system protein [Planctomyces brasiliensis
           DSM 5305]
 gi|324968358|gb|ADY59136.1| type II and III secretion system protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 714

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 112/469 (23%), Positives = 198/469 (42%), Gaps = 39/469 (8%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDV--EIGKGKKISIGLNKVII 59
           R   R      +  L   +    +         A +   ++   +    ++S+      +
Sbjct: 22  RVFGRVLSVNTAALLLLGSLVCVQPSSASGQTHAPVTEGEIYHVLSATNQLSLTERFSRV 81

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           L++   +  V   DP    V   +P  + +   + G   ++L+    K    +++ +E D
Sbjct: 82  LELEKRITRVDGFDPAVLTVSALTPHRVRIQAVSAGVTTLVLVDEFDKT-YTIEVFVEGD 140

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           + +L+  + RF  DS+++   V D+VVL G+V       +  E++E F            
Sbjct: 141 VRYLQSYIDRFFPDSSVKAVKVKDSVVLRGVVADPSHISQITEVAEQFF----------- 189

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236
              KV+N +     +QV L+V I E +R  ++Q+GF  S    +G  S    S ++  G 
Sbjct: 190 --PKVINHMQFGAANQVRLQVRIMEAQRSRIRQLGFNWSFLNGSGYVSSNPGSLSSPLGA 247

Query: 237 KFV---SEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                 + G  +   G+ D             F   L AL++   +R L E ++ A SG+
Sbjct: 248 NLTPGQTPGLSYGGAGLSDSSISFGVVNANSVFRGFLEALKQEGLLRILVETSVVADSGR 307

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339
            AS  SGG+     V  + G  SV   ++GV L   P VL  G++ L I  E SE     
Sbjct: 308 PASLLSGGEFPI-LVPQALGTLSVEWKEFGVKLEAVPIVLGQGQVILEIAPEFSERDFAN 366

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              ++   +P+   R+A+T V +  G T+++ GL+        + +P L ++P +GA FR
Sbjct: 367 AAQLDNTTVPAITTRRANTQVRMKFGQTLMIGGLIATRYTAETDKVPFLGELPGIGAAFR 426

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFN 446
             R++  ETE+ I  TP  V P+    +    P     V  D + F+  
Sbjct: 427 RVRYDENETELIILVTPEYVAPLDPHQVPDGGPGQFSDVPTDRELFWQG 475


>gi|32473554|ref|NP_866548.1| outer membrane channel for pilus assembly CpaC [Rhodopirellula
           baltica SH 1]
 gi|32398234|emb|CAD78329.1| putative outer membrane channel for pilus assembly CpaC
           [Rhodopirellula baltica SH 1]
          Length = 589

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 115/457 (25%), Positives = 199/457 (43%), Gaps = 33/457 (7%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
             T   + + S +  V        A+AA  +  +  +   +++ + +    IL +   + 
Sbjct: 21  LATAFGLAMLSVSQPVMAQSATTLASAAGDHQINQTV---ERMDLIVKSSRILSLGERIP 77

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
              V +         S   + +FGK  G   + L   + K +  +D+ +  D   +E  L
Sbjct: 78  RFQVHNEEVLGATPVSENQIQVFGKTPGTTQINLWDTEDK-LYTIDVTVVADAREVEGIL 136

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
              +  +++RV  + ++ ++ G V ++ D  +AV ++E F +              V+N 
Sbjct: 137 NSQLPLASLRVTPIGESAIISGYVTSVDDVDKAVAITEQFYT-------------TVINN 183

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGDF 245
           + + G  QV L   I EV R  L+++G   +I   +       S   D G   V     F
Sbjct: 184 IQVVGIQQVLLHTKIMEVSRTKLRELGVDLAILDDNFTLLNGPSGVLDVGAGIVEGDAGF 243

Query: 246 SVKGVLD-------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
               + D         +FET+++AL      + LAEPT+ A  G+ A FT GG+     V
Sbjct: 244 GPIPLGDTNLRFNVNGNFETLINALHEQRLTKLLAEPTVVATHGRPARFTVGGRIP-TIV 302

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVR 354
               G   +T  DYG  + F P V+ PGRI L ++ EVSEP     + VN  ++ ++  R
Sbjct: 303 PGQNGQVQITYEDYGTSIDFLPFVVGPGRIRLEVRPEVSEPDPSRAVTVNGTNVTAFTTR 362

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             +T VE+ +G T  LAGLL+   +      P    +P +G LFR  +  R E E+ I  
Sbjct: 363 YVETAVEMQAGQTFALAGLLQSRTESTTSRTPFFGSLPYVGTLFRKMQERRNEIELLILV 422

Query: 415 TPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN 449
           TP LV+ +   ++ R  P  +    DD + + +  + 
Sbjct: 423 TPELVEAMDPHEVPRGGPGMNSHSPDDKEFYLYGHIE 459


>gi|261867455|ref|YP_003255377.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412787|gb|ACX82158.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 420

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/403 (24%), Positives = 178/403 (44%), Gaps = 25/403 (6%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++Q    +  + VS P  AD  +    T  ++ K  G+  V   G DG+ + +  + ++ 
Sbjct: 1   MVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 60

Query: 119 ---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS----------- 164
               IA     L+    ++N+ V+ V    V+ G  R+ ++S     +            
Sbjct: 61  VVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKVT 120

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           ET L +             V++  NIA   Q+ +K+++ EV + + + +G   S     S
Sbjct: 121 ETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHVAG-S 179

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           GP       FGG F    G       LD       ++AL+  +  + LAEP ++ +SG++
Sbjct: 180 GPLVGGNFGFGGGFNGNQGVL----RLDAKGISAFINALDNQSNGKVLAEPNISMLSGET 235

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A    GG+  +       G+ ++   ++G+ L     +    RI L +   VS      N
Sbjct: 236 ADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNYN 294

Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
               G++P +  RKA +  E+ +G + ++ GL   +  +    +PLL  IPILG+ FR++
Sbjct: 295 FDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRSA 354

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
              R++ E+ I AT  +VKPV  +D+  PD  +      + FF
Sbjct: 355 TTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKTGTMERFF 395


>gi|87308911|ref|ZP_01091049.1| probable type II secretion system protein [Blastopirellula marina
           DSM 3645]
 gi|87288254|gb|EAQ80150.1| probable type II secretion system protein [Blastopirellula marina
           DSM 3645]
          Length = 540

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 118/496 (23%), Positives = 206/496 (41%), Gaps = 53/496 (10%)

Query: 1   MRYLQRTFFTMMSIFLFSS---------NPSVAKLPPIKEANAAVI----NISDVEIGKG 47
           MR L     T+  I               P+  +L  +   NAA +    ++ D  +   
Sbjct: 3   MRNLSTALATLAMILSAGGIAFGQAQEILPAPNQLEQLSSPNAATLQKQFDLIDEVLEPE 62

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI--GHD 105
              S+  ++  I++    V  V +++P   +V   SP  M + G  VGQ  + L     D
Sbjct: 63  LIFSLMTSQSKIVRTKSPVFRVAITNPAVVEVNEFSPTEMEVIGSAVGQTTMTLWFNNAD 122

Query: 106 GKQ-MLNLDILIERDIAH-------LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           G    L   I++  D          L+  +      S +++  ++D +++ G  R  +++
Sbjct: 123 GTVSTLRYLIIVSNDDNRADLEYGKLQAHINEMFPYSRVQLFPIADKLIVRGQARDSKEA 182

Query: 158 QRAVELSETFLSQSGRNQYANSSSK----------------KVMNLLNIAGEDQVTLKVT 201
              + +          N   + +                   ++NLL + GE QV LKV 
Sbjct: 183 AEILAVIGDQAVNQNGNISGSGTVNVGSVARLPDAEDLETTSLINLLEVPGEQQVMLKVR 242

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           +AE+ R   +++G   S+   S   + +            GG  ++  +LD    E  + 
Sbjct: 243 VAELSRQAARELGMDFSVMEESFSIAHTIM----------GGAGNLSAILDGGDVELFIR 292

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTHDYGVVLHFT 319
           A     + + LAEPTL  +SGQSASF +GG+    T       GA S +   +G  + F 
Sbjct: 293 AFSSNGSAKILAEPTLMTLSGQSASFIAGGEFAVPTAVGVGGIGAVSTSFRGFGTQVQFM 352

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           PTV+    I L +   VS     ++   +P   +R A TTV+L  G  + +AGL++D+ +
Sbjct: 353 PTVMDKDMIRLSVAPSVSSINQSLSVDGVPGLDIRGAVTTVDLREGQWLAIAGLIQDEQE 412

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVE 437
             +  +PLL  IP +GA F +    R ETE+ I  +P LV P+    +    P    +  
Sbjct: 413 ASRSRLPLLGDIPYVGAAFGSQTTKRIETELVILVSPELVHPMERDQVPLYLPGMEVTEP 472

Query: 438 DDAKAFFFNRVNKIYG 453
            + + F   ++  + G
Sbjct: 473 TNKEFFLHQQIEGLPG 488


>gi|37676253|ref|NP_936649.1| rough colony protein RcpA [Vibrio vulnificus YJ016]
 gi|326424174|ref|NP_762071.2| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus
           CMCP6]
 gi|37200794|dbj|BAC96619.1| rough colony protein RcpA [Vibrio vulnificus YJ016]
 gi|319999557|gb|AAO07061.2| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus CMCP6]
          Length = 441

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 112/452 (24%), Positives = 199/452 (44%), Gaps = 43/452 (9%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
            I +  + +   + +++       + +   +  V V  P  AD  +     + ++G  +G
Sbjct: 12  TIGVVSLSVNSNELMNLNQGSAKTISLKRQISTVFVGAPEIADYKIIDETKVVVYGVGLG 71

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             +VI+    G ++ N ++++ + +  ++ TL     D +I +  V + VVL G+V + +
Sbjct: 72  ATSVIVYDRAGNELYNAEVVVNKSLRLVKQTLIARFPDESINITNVGEQVVLDGVVSSEE 131

Query: 156 DSQRAVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTL 198
              +        L +S                   +  A      ++N L +   +Q+ +
Sbjct: 132 VKTQIYRTVGEMLKKSVTRNTLTLQDTSGGQVDSLDYTATYIYDNIINNLKVLTTEQINV 191

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           K+T+AEV    L ++G  +S +G              G+FV++  DF+ + ++       
Sbjct: 192 KLTVAEVSSSFLSELGVSYSDSGQ------------AGRFVNKLLDFTAQDIV------A 233

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           V+ A       R LAEP L+ ISG++ASF  GG+        S    SV+  +YGV L  
Sbjct: 234 VITASGDDQIGRVLAEPNLSVISGETASFLVGGELPIAIRDES--GISVSYKEYGVKLSM 291

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLL 374
              V     I L +  EVS         +    +P+ R RKA TTV+L  G + VLAGLL
Sbjct: 292 VAKVTDSENIRLSLLPEVSSIDEENKTANGLINVPALRTRKAQTTVQLKDGQSFVLAGLL 351

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
             + ++    IP+L  IPILGALF +++ N+ +TE+ I AT  LV PV   D+  P   +
Sbjct: 352 TSEERESLSKIPVLGDIPILGALFSHTKSNQTKTELIIVATVNLVDPVKAEDIKLP--SF 409

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
               D +      ++ +  P+    +    + 
Sbjct: 410 RRTSDIERLLRIDLSSMNEPELEDTLNKGGFN 441


>gi|262173894|ref|ZP_06041571.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus MB-451]
 gi|261891252|gb|EEY37239.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus MB-451]
          Length = 419

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 110/439 (25%), Positives = 190/439 (43%), Gaps = 42/439 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++       + +   +  V V+D T AD  +     + ++G   G  +VI+    G ++
Sbjct: 1   MNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGGNEI 60

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N ++++ + +  L+ TL     D +I V  V D VVL G V + +   +   L    L 
Sbjct: 61  YNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLK 120

Query: 170 ------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
                             +      A      V+N L +   +Q+ +K+TIAEV    L 
Sbjct: 121 KNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLS 180

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           ++G  +   G              GKF ++  DF+ + ++       ++ A       + 
Sbjct: 181 ELGVSYGDIG----------GGDVGKFYNKLLDFTAQDIV------AIIAASGNDDIGQV 224

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP L+ ISG++ASF  GG+         T   ++   +YG+ L     V     I L 
Sbjct: 225 LAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLS 282

Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  EVS          ++ + PS + RKA TTV+L  G + VLAGLL  + ++    IP+
Sbjct: 283 LLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPI 342

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  IPILGALF +++ +R++TE+ I AT  LV PV    +  P   +    D +      
Sbjct: 343 LGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLLRID 400

Query: 448 VNKIYGPKEASEVEGQNYK 466
           ++ +  P+    +    + 
Sbjct: 401 LSGVDEPELQRTINAGGFN 419


>gi|197118220|ref|YP_002138647.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
 gi|197087580|gb|ACH38851.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
          Length = 494

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 120/465 (25%), Positives = 197/465 (42%), Gaps = 64/465 (13%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V         + +N+ +++ +    + V ++ P  A++VV SP  + + GK VG   +I+
Sbjct: 24  VAAHAAVTTEVVVNRSVLVDLHTKSERVSIASPDVAELVVISPTQLQINGKKVGSTTLIV 83

Query: 102 IGHDGKQMLNLDILIERD-------IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
               GK     D+ ++R+       I  L+  +++     NI+V+  +DT+VL G     
Sbjct: 84  WDTAGKTSF-FDVRVKRNESVLESQIEALQDQIQQMAPKDNIKVDYANDTIVLSGTAANE 142

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSK---------------------------KVMNL 187
           Q   +A++L++ + + +G    A ++                              V+N 
Sbjct: 143 QTVAKALQLAQAYTAGNGSKAGAPATDPPLDTSRSSYQLSETQTGRQGGDADTVITVLNH 202

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           + I    QV L+V +A+V +  LK +G    I G+S+    +      G+   +  D SV
Sbjct: 203 VEIVEPQQVLLEVKVAQVDKTALKSLGISAFIRGASAEGFSNLVGAPVGELAIKNPDGSV 262

Query: 248 KGVLDRFS-------------------------FETVLHALERATAIRTLAEPTLTAISG 282
           +      +                            VL AL      + LAEP L   SG
Sbjct: 263 RSQATGIAGPIPGLANFTPIDSYQLGVSSFKAGIGAVLRALVTKNLAKVLAEPNLMVQSG 322

Query: 283 QSASFTSGGQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEP 339
           Q   F +G +  Y  VS      ATS+   D GV L+F P VL  G I L+I   EVS  
Sbjct: 323 QVGKFLAGSKIPYSIVSGVGALSATSIQFIDVGVKLNFKPEVLENGLISLKIDPAEVSSI 382

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +     P    R+  T V+L  G +++LAGLL+++  +    IP+L  IPILGALFR
Sbjct: 383 TGVLAVNGYPIIDTREVRTRVKLKDGESLILAGLLQEEAIKAMSKIPILGDIPILGALFR 442

Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAF 443
           +++ + +E E+    TP LV   A    +  P D     +  K  
Sbjct: 443 STQDDIKEKELVFFITPKLVTASAPGSRILLPTDKPLTPEQEKEL 487


>gi|84385704|ref|ZP_00988735.1| rough colony protein RcpA [Vibrio splendidus 12B01]
 gi|84379684|gb|EAP96536.1| rough colony protein RcpA [Vibrio splendidus 12B01]
          Length = 447

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 114/406 (28%), Positives = 187/406 (46%), Gaps = 36/406 (8%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +S+       + +  ++  V V++   AD  + +   + ++G   G  ++I     
Sbjct: 23  ASELLSLDQGGAKTINIKRNIDTVFVANSQIADYKIIANGKLVIYGIGRGATSIIAYDRA 82

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G ++ N ++++ + +  L+ TL     D NI++  + + VVL G+V + +       L  
Sbjct: 83  GNEIYNAEVVVNKSLRLLKQTLVARYPDENIKLTNIGEQVVLDGVVSSEEVKANVYRLVG 142

Query: 166 TFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             + +S                   +  A    + ++N L +   +Q+ +K+T+AEV   
Sbjct: 143 EMMKKSKERHTFELSGANGESVDALDFTATYVFQDIINNLKVLTTEQINVKLTVAEVSSS 202

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  ++        S   +    G FV++  DF+ + ++       V+ A      
Sbjct: 203 FLTELGVSYA-------ESNGKSIGGAGTFVNKILDFTAQDIV------AVISASGNDNI 249

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            R LAEP L+ ISG+SASF  GG+             S+T  +YGV L     V     I
Sbjct: 250 GRVLAEPNLSVISGESASFLVGGEIPIAV--RDNDGVSITYKEYGVKLSMVAKVTDSENI 307

Query: 329 GLRIQTEVSEP--VIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS      GVN+G   +PS R RKA TTV+L  G + VLAGLL  + Q+    
Sbjct: 308 RLSLLPEVSSIDKANGVNSGLISVPSLRTRKAQTTVQLKDGQSFVLAGLLTTEEQESLSR 367

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           IPLL  IPILGALF  +   R +TE+ I AT  LV PV   ++  P
Sbjct: 368 IPLLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKEDEIKLP 413


>gi|156975620|ref|YP_001446527.1| Flp pilus assembly protein secretin [Vibrio harveyi ATCC BAA-1116]
 gi|156527214|gb|ABU72300.1| hypothetical protein VIBHAR_03353 [Vibrio harveyi ATCC BAA-1116]
          Length = 449

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 112/405 (27%), Positives = 190/405 (46%), Gaps = 47/405 (11%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           I ++    ++V   +  V VSDP   D  V +  T+ +F K VGQA  I+ G   K +L+
Sbjct: 28  ITVSDGQHIEVKEPISTVFVSDPEIVDYNVVNENTVVVFAKEVGQARFIIYGKSKKVLLS 87

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
             I+++ D++ +   ++    + NI+VE V + V + G+V + Q       +  T L + 
Sbjct: 88  DRIIVDIDLSLVRRQIKLHYPELNIKVESVGNQVAVSGVVESEQQRDDIYRMVATLLGRD 147

Query: 172 GRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
              ++                         N + + ++ L+ +A + QV +K+++A+V  
Sbjct: 148 KTEKWEETQVLEFENEAYDIEEPQSMIFARNMTWEGILELIEVATDQQVNVKISVAQVTE 207

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
              + +G   S  G+  G                     +    D     T++ AL    
Sbjct: 208 TFSQTVGVDWSSVGADVGEF-------------------LFQQFDAADLTTLITALGNEN 248

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             + LAEP LT ISG+SASF  GG+      +++    ++T  ++G+ L  T  VL  G+
Sbjct: 249 VAQVLAEPNLTVISGESASFLVGGEVPVIVTTNNN--INITFREFGIKLDLTAKVLHEGK 306

Query: 328 IGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I +R+  EVSE    + +    +P +  R+A TT+EL  G + VL GL+     +  + I
Sbjct: 307 IRMRLMPEVSEVERYIRSAGLEVPQFATRRAMTTIELGDGDSFVLGGLMSSADLEELKKI 366

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           PLL  IP+LGA FR +  +R  TE+ I AT  LVKP+  +D+  P
Sbjct: 367 PLLGDIPVLGAAFRKASTDRRRTELIIVATVNLVKPMKKKDIQMP 411


>gi|319940440|ref|ZP_08014785.1| type II and III secretion system protein [Sutterella wadsworthensis
           3_1_45B]
 gi|319806066|gb|EFW02815.1| type II and III secretion system protein [Sutterella wadsworthensis
           3_1_45B]
          Length = 530

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 128/495 (25%), Positives = 218/495 (44%), Gaps = 68/495 (13%)

Query: 10  TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGK-----------KISIGLNKVI 58
           T+ +     +   +A  P      A V     V  G               + + L +  
Sbjct: 25  TVFAAACLGALLGLAVSPASAALKAQVPTDVKVLEGASSLKNLKLAKPTSSLRVFLKEGA 84

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +LQ+P     VLV+ P  A   + SP  ++ FG   G      +   G  +  + + +E 
Sbjct: 85  LLQLPSAAAKVLVATPGIASYQMPSPDQVFFFGTAAGSTTFYALDEAGAVIAAVQVTVEH 144

Query: 119 DIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
           ++  L+  ++R +  ++I  V  +++ +++ G V+T  DS+R  +L E++L  S      
Sbjct: 145 NLEKLKADIKRAVPSASIELVPALNNRMIVRGKVKTALDSRRVTQLVESYLVSSAAAGGP 204

Query: 178 NSSSKK------------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              S++                  V+N L +    QV ++V + EV R +   +GF    
Sbjct: 205 GQGSQQGGQDGGGQGGSAGGQSSPVINQLKVEVSQQVNIQVRVVEVSRSLTHSLGFNWGA 264

Query: 220 ------------TGSSSGPSKSFAAD---FGGKFVSEGGDFSVKGVL------------- 251
                        G+S G   + AA+   F        G+ ++ G++             
Sbjct: 265 VLNTGRGPLFLGNGTSQGLFSTHAANNSHFNPNDSFADGNANIPGLMPDSNTAGAALGGI 324

Query: 252 ---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
               R S   +++A+  +     LAEP LTA+SGQ A+F SGG+     ++ +  + ++ 
Sbjct: 325 FNMGRMSLGVLINAMSESGFASLLAEPNLTAMSGQPAAFASGGEVPIVIITGN--SITID 382

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYRVRKADTTVELP 363
              +GV+L  TPTVLSP RI + +  EVSE      VI      +P+ RVR+A+TTVEL 
Sbjct: 383 YKSWGVILRMTPTVLSPNRIAIHVAPEVSELTSEGQVILSEGSVIPAVRVRRAETTVELA 442

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SG +  LAG+L+ +  Q   G+P L  +P +G LF   +   E++E+ I  T  +V PV+
Sbjct: 443 SGQSFALAGMLRSESSQTVNGVPGLRNLPFVGRLFEYEQTQVEDSELVILLTANIVDPVS 502

Query: 424 MRDLSRPDDHYSVED 438
             DL  P    +  D
Sbjct: 503 SGDLRVPGRGINAVD 517


>gi|170724970|ref|YP_001758996.1| type II and III secretion system protein [Shewanella woodyi ATCC
           51908]
 gi|169810317|gb|ACA84901.1| type II and III secretion system protein [Shewanella woodyi ATCC
           51908]
          Length = 446

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 99/402 (24%), Positives = 186/402 (46%), Gaps = 44/402 (10%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           + LN    +++  ++  V +S P  AD  +     + ++G+ +GQA + +     + +L+
Sbjct: 29  VTLNDASSIELKQEIGTVFISQPEVADYKITGNNKLVIYGRQLGQARLFVYNKANEVILS 88

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
             + ++ +++ +   L+ F  D ++ +  V D V + G+V + +          TFL + 
Sbjct: 89  QLLHVDINLSQIRRQLKLFYPDLDLTLTSVGDKVAVRGIVYSEEQRNDIYRQVATFLGRE 148

Query: 172 GRNQYANSS---------------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
              ++  S                       + ++  L ++   QV +K+++A+V ++  
Sbjct: 149 KVERFDESELVEFKDSFTEANWLAYERNFIWQGIIEGLRLSQTQQVNVKISVAQVTKEFN 208

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
           + +G   S  G S G                                T+++AL + +   
Sbjct: 209 ETLGVSWSTVGRSVGEFSFLD-------------------FKASDLSTIINALGKDSIAE 249

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP L+ +SG+SASF  GG+     + S+   T++T  ++G+ L  +  VL+  +I L
Sbjct: 250 VLAEPNLSVMSGESASFLVGGEIPV--IFSNNNTTNITYKEFGIRLDLSAKVLNNEKIKL 307

Query: 331 RIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           ++  EVS     V A  +  P    R+A TT+EL  G + +L GL+  D  +    IPLL
Sbjct: 308 QMMPEVSAVEGFVEAAGIKIPQLTTRRAMTTIELGDGDSFLLGGLMSSDELENVSKIPLL 367

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
             IP+ GALFR +   R++TE+ I AT  LVKP++  ++  P
Sbjct: 368 GDIPVFGALFRQAGTTRKKTELVIVATVNLVKPLSPTEVRLP 409


>gi|15602717|ref|NP_245789.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721161|gb|AAK02936.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 470

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 177/424 (41%), Gaps = 32/424 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            K  ++      +++    +  + VS P+ AD  +    +  ++ K  G+A V   G DG
Sbjct: 28  SKTFNLEQGGTKLVRTDEKIDTIFVSSPSVADYEILDDNSFIIYAKEEGRAEVTAFGQDG 87

Query: 107 KQMLNLDILIER------DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           K +    I +        DI+     ++    +SN+ V+ V    V+ G  RT ++S+ A
Sbjct: 88  KPLTTDFINVNPLISNINDISDTNRQIKARFPNSNLSVKKVGKAYVIEGKARTQEESEEA 147

Query: 161 VELSETFLSQSGR----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
             +    L  S +                          V+N  ++A   Q+ +K+++ E
Sbjct: 148 HRIVGEALGNSKKVTETSFNRSEGVKEYIPFLDKYQFDGVINNASVADSTQINVKLSVVE 207

Query: 205 VRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           V + + + +G     + G  SGP    +           G       ++       ++AL
Sbjct: 208 VNKKLTEALGINWGRVVGVHSGPLLGGSVS---LSGGFSGSGGSTLNINATGVSAFINAL 264

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
                 + LAEP+++ +SG++A    GG+  +       G+ ++   ++GV L     V 
Sbjct: 265 NNQDNGKILAEPSISLLSGETADILVGGELPFAQ-KDKEGSATIIYKEFGVKLIVGAKVQ 323

Query: 324 SPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
              RI L +   VS         N G +P +  R+A +  E+  G + ++ GL      +
Sbjct: 324 KNKRIRLALDQSVSTIAGSYAYDNVGTVPYFNTRRAKSIFEVADGESFIIGGLFSSQDAE 383

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               +PLL  IPILG+ FRN+R +RE+ E+ I AT  +VKPV   D+  P   +      
Sbjct: 384 GINKVPLLGDIPILGSFFRNARTDREDKELVIVATVNVVKPVHESDIVYPT--FEQTGTM 441

Query: 441 KAFF 444
           + FF
Sbjct: 442 ERFF 445


>gi|33152386|ref|NP_873739.1| rough colony protein A [Haemophilus ducreyi 35000HP]
 gi|21326707|gb|AAL92467.1| RcpA [Haemophilus ducreyi]
 gi|33148609|gb|AAP96128.1| rough colony protein A [Haemophilus ducreyi 35000HP]
          Length = 456

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/426 (20%), Positives = 190/426 (44%), Gaps = 24/426 (5%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           A++ +        K  ++   +  +++    +  + VS P  AD  +    +  L+ K  
Sbjct: 14  ALLGMFTFTPSLAKTFNLEQGQTKLIKTKTKIDTIFVSSPEVADYQILDDNSFMLYAKGE 73

Query: 95  GQANVILIGHDGKQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           G+  +++   +G  +    + +     +I+     ++    +SN+ V+ +    V+ G  
Sbjct: 74  GKTEIVVFDFEGNALTEDVVSVNNMINNISETNQQIQTRFPNSNLTVKKIGKAYVVEGKA 133

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKV-----------MNLLNIAGEDQVTLKV 200
           +   +++  + +    L         N + ++V           +N    +   Q+ +K+
Sbjct: 134 KNEAETEDVIRVVGEALGAGKNVTSKNLAGEQVPFLNNYQYEGIINNTTASDATQINVKL 193

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           T+AEV +    +IG   S    +   + +  A  GG F  EGG  ++   +++ + + ++
Sbjct: 194 TVAEVNKKFSDEIGIHWSNLSGNFFKNLTNLAIQGG-FGPEGGKLAL---VNQDNLQMLV 249

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            AL+  +  + LAEP ++ +SG++A    GG+     +    G+ +V   ++G+ L    
Sbjct: 250 TALDNQSNGKILAEPNISMLSGETADILVGGEVPI--IERKDGSPTVKYKEFGIKLAVGA 307

Query: 321 TVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            +    RI L +  EVS       ++   +P +  R++ +T E+ +G + +++GLL  + 
Sbjct: 308 KLQKNDRIRLALSQEVSTIAGSFKLDQDSLPIFNTRRSKSTFEVGNGESFIVSGLLNKED 367

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
            +    +P L  IPILGA FR++  +R   E+ + AT  LVKPV   ++  P   +    
Sbjct: 368 IESITKVPGLGDIPILGAFFRSANTSRGSKELVVIATVNLVKPVDGSEILYPT--FENTG 425

Query: 439 DAKAFF 444
             + FF
Sbjct: 426 TMERFF 431


>gi|197335194|ref|YP_002155269.1| general secretion pathway protein D [Vibrio fischeri MJ11]
 gi|197316684|gb|ACH66131.1| general secretion pathway protein D [Vibrio fischeri MJ11]
          Length = 436

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 113/409 (27%), Positives = 186/409 (45%), Gaps = 33/409 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           +++I  + +   +  ++       +    ++  V +S+P  AD  +     + LFG+ VG
Sbjct: 12  LLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYKVVLFGREVG 71

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
            +  I     G+++LN  I++ R+ + +E  ++     S+I +  +    V+ G V   +
Sbjct: 72  DSVFIAFDVQGRELLNKKIIVSRNYSGIEQQVKLRFPTSDIDIFAIGTNAVVSGTVLNEE 131

Query: 156 DSQRAVELSETFLSQSGRNQYANSSS-----------KKVMNLLNIAGEDQVTLKVTIAE 204
           D  +  E+  T L     +  A               + V+N + +A   QV +K+TIAE
Sbjct: 132 DRDQIYEMVATLLFDDNADNNAQDDRTELTYMDKLNFEGVVNQIEVARTKQVNVKLTIAE 191

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V    ++  G +    G              G FV +   FS   ++       V+ A+ 
Sbjct: 192 VSHSFMQDFGIKVGSNGQ------------AGIFVDQLVHFSASDIVS------VITAVG 233

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + LAEP L+ ISG+ ASF  GG+    TV    GAT+V   ++GV L  T  V  
Sbjct: 234 TDSVGQVLAEPNLSVISGEDASFLVGGELPVVTV--IDGATNVQYKEFGVKLDLTAKVER 291

Query: 325 PGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             +I L +   VS         +  +PS + R A TTVEL  G + VL GLL  + ++  
Sbjct: 292 DDKIKLALAPSVSSLDTQYANDNYNLPSLKTRSARTTVELGDGQSFVLGGLLNSEEKESL 351

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
             IP +  IPILGALFR++   R +TE+ I AT  LV+PV    +  P 
Sbjct: 352 TRIPFVGDIPILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPT 400


>gi|154250526|ref|YP_001411350.1| type II and III secretion system protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154154476|gb|ABS61693.1| type II and III secretion system protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 461

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 109/438 (24%), Positives = 191/438 (43%), Gaps = 32/438 (7%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
           P+       + +    +   + +SI +    IL++   V  + +++P+  DV V S R +
Sbjct: 22  PMLAVLLTALLLPQGPVLAAETLSISIGGQRILKLGQTVDRIAIANPSIVDVKVISSREL 81

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
            + G++ G  ++ +    G    +  +++  DI  L+  L R  A ++++       VVL
Sbjct: 82  RILGQSEGTTDLDIWFAGGAS-KSYYVVVGADITGLQSELARDPALADVKATETGKGVVL 140

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V +++  QRA E++ ++L +               ++L +A    V ++V  A V  
Sbjct: 141 KGQVYSLEAQQRAREIARSYLGKDAG------------DMLTVADRRMVAVEVRFAAVST 188

Query: 208 DILKQIGFQHSITGSSS-------GPSKSFAADFGGKF-----VSEGGDFSVKGVLDRFS 255
             LK +G       +S          S SF    G        +     F++       +
Sbjct: 189 STLKALGLNFQSLDNSFQFAAIGPNASSSFGYTPGAGLDPDTSLPLSQAFNLFLAWPGSN 248

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYG 313
              V+ AL  A   + LAEPTL   SG+ A F +GG+       S    G  ++    +G
Sbjct: 249 LLGVISALSSANLAQLLAEPTLLVRSGEDADFLAGGEIPIPVPQSGVGNGTVTIEYKKFG 308

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIV 369
           V L    TVL   RI L++  EVSE        V    +P+ R R   TT+EL  G + V
Sbjct: 309 VQLGVAATVLDNDRIVLKVSPEVSELDYTNALVVQGFRIPALRTRSTRTTIELGDGQSFV 368

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL-S 428
           LAGL+      +++ IP + ++P++G  F+ ++  RE  E+ I ATP LV P+   ++  
Sbjct: 369 LAGLMYSTSGNIEDRIPGIGELPVIGTFFKRTQNARERQELIIVATPRLVSPMEAGEVPP 428

Query: 429 RPDDHYSVEDDAKAFFFN 446
            P + +  + D      N
Sbjct: 429 LPGEGHVYDSDLGQNLLN 446


>gi|59711120|ref|YP_203896.1| general secretion pathway protein D [Vibrio fischeri ES114]
 gi|59479221|gb|AAW85008.1| general secretion pathway protein D [Vibrio fischeri ES114]
          Length = 436

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 112/409 (27%), Positives = 186/409 (45%), Gaps = 33/409 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           +++I  + +   +  ++       +    ++  V +S+P  AD  +     + LFG+ VG
Sbjct: 12  LLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYKVVLFGREVG 71

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
            +  I     G+++LN  I++ ++ + +E  ++     S+I +  +    V+ G V   +
Sbjct: 72  DSVFIAFDVQGRELLNKKIIVSKNYSGIEQQVKLRFPTSDIDIFAIGTNAVVSGTVLNEE 131

Query: 156 DSQRAVELSETFLSQSGRNQYANSSS-----------KKVMNLLNIAGEDQVTLKVTIAE 204
           D  +  E+  T L     +  A               + V+N + +A   QV +K+TIAE
Sbjct: 132 DRDQIYEMVATLLFDDNADNNAQDDRTELTYMDKLNFEGVVNQIEVARTKQVNVKLTIAE 191

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V    ++  G +    G              G FV +   FS   ++       V+ A+ 
Sbjct: 192 VSHSFMQDFGIKVGSNGQ------------AGIFVDQLVHFSASDIVS------VITAVG 233

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + LAEP L+ ISG+ ASF  GG+    TV    GAT+V   ++GV L  T  V  
Sbjct: 234 TDSVGQVLAEPNLSVISGEDASFLVGGELPVVTV--IDGATNVQYKEFGVKLDLTAKVER 291

Query: 325 PGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             +I L +   VS         +  +PS + R A TTVEL  G + VL GLL  + ++  
Sbjct: 292 DDKIKLALAPSVSSLDTQYANDNYNLPSLKTRSARTTVELGDGQSFVLGGLLNSEEKESL 351

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
             IP +  IPILGALFR++   R +TE+ I AT  LV+PV    +  P 
Sbjct: 352 TRIPFVGDIPILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPT 400


>gi|52425834|ref|YP_088971.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307886|gb|AAU38386.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 458

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 92/422 (21%), Positives = 173/422 (40%), Gaps = 30/422 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            K + +       +++   +  + VS    AD  +    +  ++GK  G  +V     +G
Sbjct: 18  AKPMYLEQGTSKYIELDKKIDTIFVSSSEVADYEIVDDYSFMVYGKQEGTTDVTAFDANG 77

Query: 107 KQMLNLDILIE---RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
             +    + +     +I      ++    +SN++V+ +    V+ G   T  +S+    +
Sbjct: 78  NILYTDTLNVNALINNIVDTNKQIKARFPNSNLQVKKLGKAYVIEGKANTQHESEEVNRI 137

Query: 164 SETF-----------------LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
                                +S              V+N  NI    Q+ +K+T+AEV 
Sbjct: 138 VGEAIGVAPKVTETTLKRGNGMSDEKIPFLDKYEYNGVINNTNIDKTKQINVKLTVAEVN 197

Query: 207 RDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
           ++    +G +   ++GS      S A  + G F    G  ++   ++       + A+  
Sbjct: 198 KNFSDSLGIKWEHLSGSVLENWTSGANGYSGGFDGTTGSIAL---INANRLSAFITAVNN 254

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
           A   + LAEP ++ +SG++A    GG+  +     S G TS+   D+GV L     V   
Sbjct: 255 ANNGKILAEPNISMLSGETADILVGGEVPFAQ-RDSDGNTSIIYKDFGVKLMVGAKVQKN 313

Query: 326 GRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            ++ + +  EVS         + GD+P ++ R+A +T E+ +G + ++ GLL     +  
Sbjct: 314 DQVRIVLAQEVSTLAGNYTYTSVGDIPYFQTRRAKSTFEVGNGESFIIGGLLSSSDLEGV 373

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
             +PL   IPILGA FR+   +RE  E+ + AT  LV P     +  P   +      + 
Sbjct: 374 SKVPLFGDIPILGAFFRSVTTSRETKELVVVATVNLVTPNDAEKVIYP--SFEQTGTLER 431

Query: 443 FF 444
           FF
Sbjct: 432 FF 433


>gi|149188846|ref|ZP_01867136.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
 gi|148837266|gb|EDL54213.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
          Length = 453

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 107/405 (26%), Positives = 186/405 (45%), Gaps = 47/405 (11%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           I +N    +++   +  V VSDP   D  V +  ++ +F K VGQA +++ G   K + +
Sbjct: 32  ITVNDAKNIELSERITKVFVSDPDIVDYNVINENSIVIFSKAVGQARLMIYGESEKLLYS 91

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
             I+ + D++ +   +     D+++++E V + V + G+V + ++      L  T L + 
Sbjct: 92  ERIIADIDLSQVRRQVALLFPDTSVKIESVGNQVAVSGIVNSERERDDIYRLVATLLGRE 151

Query: 172 GRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
              ++                         N +   ++  L +A   QV +K+++A+V  
Sbjct: 152 KLEKWDKVQKLKFQNDNISIEEPESMIFERNMTWDGIIERLEVATVQQVNVKISVAQVTE 211

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
              + +G   S          SF A+ G     +          +     T++ AL    
Sbjct: 212 RFAETVGVDWS----------SFGANVGQFLFQQ---------FEAADLTTLITALGNEN 252

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             + LAEP LT ISG+SASF  GG+       S+    ++T  ++G+ L  T  VL+  +
Sbjct: 253 VAQVLAEPNLTVISGESASFLVGGEVPVIV--STNNNVNITFKEFGIKLDLTAKVLTEEK 310

Query: 328 IGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I +++  EVSE    + A  +  P    R+A TT+EL  G + VL GL+     +  +  
Sbjct: 311 IRMQLFPEVSEIERYIRAAGIEVPQLATRRAMTTIELGDGDSFVLGGLMSSADFEEIQKT 370

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           PL+  IP+LGA FR S  +R  TE+ I AT  LVKP+  +D+  P
Sbjct: 371 PLIGDIPVLGAAFRKSSTDRRRTELIIVATVNLVKPMKRKDIQLP 415


>gi|283779855|ref|YP_003370610.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283438308|gb|ADB16750.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 585

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 110/476 (23%), Positives = 201/476 (42%), Gaps = 24/476 (5%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           RY        + + L  + P+ ++   +         +     G  +K+ + +N   +++
Sbjct: 13  RYSLLAGLPALLVALTFAAPAFSQPMSLPGVGPMPAAVKFKVQGPAEKLEMTVNTSRVVE 72

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
            P DV  +LV++P    +   SP ++ L     G   + +   D  Q+  LD+++  D+ 
Sbjct: 73  FPFDVPKMLVNNPDLVRITPISPNSIQLSAVKGGVTQLNVWNAD-DQVTTLDLIVIPDVQ 131

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            LEM L+    D+ IR+  ++ ++ + G V   +       ++E +              
Sbjct: 132 ELEMILKHEFPDAAIRLRPLASSLYISGFVPKAEMVASITRVAEDYF------------- 178

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239
            K++N + + G  +V L V + EV R  L+ +GF  +        ++S +      G   
Sbjct: 179 PKIINNMTVGGVQKVLLHVKVMEVSRTKLRTMGFDWAQLNGDDFVTQSVSGLLQTPGTLT 238

Query: 240 SEGGDFSVKGVL-DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G     G+L D   F   L AL +    + LAEPTL  +SG+ A F  GG+     +
Sbjct: 239 GNTGATVRFGILTDNNQFYGFLEALRQNDLAKLLAEPTLVTMSGRPAYFNVGGEVPIP-M 297

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKA 356
             S G T+V    +G  + F P VL  G I L ++ EV+  +P +      +P +R R A
Sbjct: 298 QQSLGVTTVQYKQFGTRIDFVPIVLGNGSIRLEVRPEVTEIDPSLRDAVTGVPGFRQRGA 357

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT VE+ +G T+ +AGL+ + ++    G+P L+ +P  G  FR       E E+ I  TP
Sbjct: 358 DTAVEIKAGQTMAIAGLVYNRVEASNRGVPFLADLPWAGGAFRRVSEKVNEVELVIMVTP 417

Query: 417 FLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN--YKGA 468
              + +   ++    P    +   D + +    +              Q   ++G 
Sbjct: 418 EFTEALDPSEVPACGPGQLTTSPTDKELYGRGYIEVPKANCNNGNCAPQGSMFQGT 473


>gi|225872754|ref|YP_002754211.1| type II/III secretion system protein [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792181|gb|ACO32271.1| type II/III secretion system protein [Acidobacterium capsulatum
           ATCC 51196]
          Length = 480

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 201/466 (43%), Gaps = 41/466 (8%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLP--PIKEANAAVINISDVEIGKGK-KISIGLNKVIILQ 61
           +      M++ L +  P     P      A  A   +  V++      + + + + + L 
Sbjct: 9   RNLLHRAMTVALIAVLPLAGARPVNAAAAAETAQGPVDFVQLNNSNFMLHLLVGRSMFLD 68

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
               ++ V VSDP   +    SP  + +  K  G +++++    G+      +  + D++
Sbjct: 69  TATPLKRVYVSDPAVLNSFTASPHQVLITAKAPGISSLVVWDESGRS-NVYTVSSDIDVS 127

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            L+  +        I    + D V L G V T  ++  A +L++ +              
Sbjct: 128 GLQAAINAAFPHDMIHASALQDRVTLTGEVATESEAAAAEKLAQGYA------------- 174

Query: 182 KKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKS--- 229
           K V N +++A +   QV LKV  AEV R   +Q+GF         ++TG+   PS S   
Sbjct: 175 KTVENSIDLAPQRVQQVQLKVRFAEVDRTRAQQLGFNFISAGRNAAVTGTQQFPSFSNYT 234

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              +     ++      +       +    + ALE    ++ LAEPT+T+ISG  ASF S
Sbjct: 235 LGGNSTANPITVSNPLDLLLYSSDLNLGATIQALENDQVLQILAEPTITSISGVEASFLS 294

Query: 290 GGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IG 342
           GGQ  +  V   T    + +V    YGV L FTP V   G I L++  EVS       + 
Sbjct: 295 GGQFPFPVVQGGTTGFTSVTVQFRPYGVKLDFTPYVNPDGTIRLKVAPEVSALDYTNEVQ 354

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           ++   +P+   R+A T V L +G +  ++GLL   +    E +P +S+IPILG LFR+ +
Sbjct: 355 ISGYSIPAIDTRRAKTEVVLKNGQSFAISGLLDHRLTNDYERMPGISRIPILGQLFRSYQ 414

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
                T++ +  TP +V P     L  P     +   AK +  N++
Sbjct: 415 KQASTTDLIVIVTPTIVDP-----LHEPTVAPKLPALAKPYLDNKL 455


>gi|294102189|ref|YP_003554047.1| type II and III secretion system protein [Aminobacterium
           colombiense DSM 12261]
 gi|293617169|gb|ADE57323.1| type II and III secretion system protein [Aminobacterium
           colombiense DSM 12261]
          Length = 384

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/427 (25%), Positives = 173/427 (40%), Gaps = 53/427 (12%)

Query: 1   MRYLQRTFFTMMSIFLFS----SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56
           M  L+R  +   ++   +    + P +A    +   ++AV+   +V              
Sbjct: 1   MACLKRKLWVFFAVVFLTVVVGALPVLAATYHLDVGDSAVLKYQNV-------------- 46

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
                     + + V +P   D +      + L GK  G A +I+    G  M    IL+
Sbjct: 47  ----------KRMSVGNPDVLDAIPLDNNQVLLTGKVEGGAALIVWDAAGMHMEK--ILV 94

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
              I      L+  +   NI V +    VVL G V+T +D  RAV ++  F         
Sbjct: 95  HPSIEAPSWELKELLQAENIDVTVRGGAVVLEGKVKTPRDRLRAVAIAGAF--------- 145

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                +KV+NLL +    Q+ L+  + EV++     +G +        G   +F   F  
Sbjct: 146 ----GEKVINLLEVDSAPQIKLRAVVMEVKKKDGDALGMK-----RLEGQEGTFWGIFDL 196

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              +       KG          ++AL      + L+ P LT +SG+ AS   GG+    
Sbjct: 197 TPDTGHMLDYTKGAHYSAKINAWINALVENKEAKILSRPYLTTLSGEEASLNVGGEIPVP 256

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYR 352
            V        +    YGV++ FTP +   G I L  + EVSE      I      +P+ R
Sbjct: 257 -VGVDNNEIKIEWKPYGVIMKFTPELDGIGEIWLTFEAEVSEIDWENAIETQGIKIPAIR 315

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            RK    V L    ++V+ GLL +   +L + IPLL  IPI+G LF++  F  +ETE+ I
Sbjct: 316 TRKIANKVRLGHNESLVVGGLLDNKQSKLVKKIPLLGDIPIIGELFKSREFTNDETELVI 375

Query: 413 AATPFLV 419
             TP +V
Sbjct: 376 TVTPEVV 382


>gi|260914312|ref|ZP_05920781.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella
           dagmatis ATCC 43325]
 gi|260631413|gb|EEX49595.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella
           dagmatis ATCC 43325]
          Length = 465

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/408 (21%), Positives = 170/408 (41%), Gaps = 31/408 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            K  ++      ++Q    +  + VS P  AD  +    +  ++ K  G+A +     +G
Sbjct: 30  AKTFNLEQGGTQLIQTKEKIDTIFVSSPAIADYEILDDNSFIIYAKEQGRAEISAFDANG 89

Query: 107 KQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
           K + N  + ++     I+     ++    ++N+ V+ V    V+ G  R+ ++S     +
Sbjct: 90  KTLTNDVVNVDSLFTGISDTNQQIKARFPNTNLSVKKVGKAYVIEGKARSQEESDEVHRI 149

Query: 164 SETFLSQSGR---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
               L    +                         V+N +N+    Q+ +K+T+ EV + 
Sbjct: 150 VGEALGNGKKVTETKFKAGESEESLPFLDKYQFDGVVNNVNVDETTQINVKLTVVEVNKK 209

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERA 266
           + + +G   S              D  G      G   ++G+L  D       ++AL+  
Sbjct: 210 LSEAVGINWS-------RLSGGVPDLLGGVSRVTGFDGIQGLLKIDASGVSAFINALDNQ 262

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              R LAEP ++ +SG++A    GG+  +       GA ++   D+G+ L     +    
Sbjct: 263 NNGRILAEPNISMLSGETADILVGGEIPFAQ-RDKEGAPTIIYKDFGIRLAVAAKLQKNN 321

Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           RI L +   VS      +    G++P +  R++ +  E+  G + ++ GL      +   
Sbjct: 322 RIRLALDQRVSTIAGNYSFESVGEIPFFNTRRSKSVFEVADGESFIIGGLFNSSDLEGIN 381

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
            +P+L  IPILGA FRN++ +RE+ E+ I AT   VKPV   ++  P 
Sbjct: 382 KVPVLGDIPILGAFFRNAKTDREDRELVIVATVNTVKPVQEDEIVYPT 429


>gi|255658704|ref|ZP_05404113.1| putative type II/III secretion system protein [Mitsuokella
           multacida DSM 20544]
 gi|260849091|gb|EEX69098.1| putative type II/III secretion system protein [Mitsuokella
           multacida DSM 20544]
          Length = 548

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/443 (23%), Positives = 187/443 (42%), Gaps = 58/443 (13%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
            +SI LN+   L    ++  V +++P  ADV +    ++ + G + G   + +   +G +
Sbjct: 30  PLSIDLNQSYYLNTGRNITRVAIANPKIADVSLLDGTSLNVIGISPGTTTLNVWASNGYR 89

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
                I +    + L   ++  I   ++RV+M+   ++L G V+   +   A  +++ + 
Sbjct: 90  -YEYRITVSDQDSGLAKIVQDAIGLPDVRVQMIGGKILLRGTVKNQYERNLAYTIAKLYA 148

Query: 169 S---------------------------------------QSGRNQYANSSSKKVMNLLN 189
                                                   Q      + S+   V+NLL 
Sbjct: 149 KGSNSSPSQDQGQYVSTTESKSSMTPDGRYENKTVTNDSYQRTPRDTSGSTGDSVVNLLE 208

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--------E 241
           +   DQ+ ++    E+     K +G  ++    S   S     +  G + +         
Sbjct: 209 MTNPDQINIEAMFVELGTSDAKNLGINYASQDMSDTDSSGIKMNDVGTYYAGESYGRQRS 268

Query: 242 GGD--FSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           GG+  ++   +   FS     +HAL      R ++ P +T +SG++AS   GG+  Y+  
Sbjct: 269 GGNHWYNSNWLFTHFSKINAEIHALIENGKARVISRPNVTTMSGKNASILIGGEVPYQE- 327

Query: 299 SSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRV 353
           S+  G+T+ +   YG+ +    PTV   G I   ++T+VS       +  +   MP    
Sbjct: 328 SNGFGSTTTSYKTYGIGIQLWKPTVDQDGNITTELETQVSRLDWNNAVTKDGYRMPGIAT 387

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R A TTV +PSG T+V+ GLL  +     + +PLL  IPILG LF+    +R++TEI + 
Sbjct: 388 RSAYTTVNIPSGMTMVIGGLLNSNDANTIQKVPLLGNIPILGELFKYHNKSRQKTEIVVL 447

Query: 414 ATPFLV-KPVAMRDLSRPDDHYS 435
            TP +V +    R     +D Y+
Sbjct: 448 ITPRVVSEETPARMSPDMEDAYN 470


>gi|116626779|ref|YP_828935.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229941|gb|ABJ88650.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 471

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 102/416 (24%), Positives = 186/416 (44%), Gaps = 40/416 (9%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           +     + +  ++   +  +L    D+  V +S+P  AD VV SPR + +  K  G+A +
Sbjct: 23  AQATKPQVRDFTLLEGRGELLTFQNDITKVAISEPKIADAVVISPREVMVNAKGPGRATL 82

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS--NIRVEMVSDTVVLHGMVRTIQDS 157
           ++    G   +  +I + +D    +M  +  I  +   I +    DT+VL G+V++  D+
Sbjct: 83  VVW-ETGLDPVRYEIAVTKDTTEWDMFTKSMIDSAGVPIHITGSGDTIVLSGVVKSADDA 141

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIG 214
           +R   +++T              +K V+NLL         Q+ L+V  A + R  L QIG
Sbjct: 142 KRLAGMAQT-------------RAKTVINLLQAPPPAEPRQILLQVKFAAIDRVALTQIG 188

Query: 215 FQ-HSITGSSSGPSKS----------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           F   S      G S +                G+ V+     ++       +    + AL
Sbjct: 189 FNLFSTNDKFIGASSTEQFSSPRFSQLQPTGTGQTVNFSDLLNLFAFRPDLNIGATIKAL 248

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLH 317
           E    ++ LAEP L  + G+ A+F +GG   Y T++++          +V    +GV L 
Sbjct: 249 EERNLLQILAEPNLLCLDGKEATFLAGGTFPYPTITTTPTGGATAPVITVQFKPFGVKLD 308

Query: 318 FTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           F PTV   G I L++Q EVS       + +    +P+   R+A+T + L  G +  +AGL
Sbjct: 309 FQPTVTPQGSIDLKVQPEVSSLDYANAVTLQGFVIPALSQRRAETEIILKDGESFAIAGL 368

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + + + +    +P L  +P+LG +FR+    +   E+ +  TP  VKP+   + ++
Sbjct: 369 IDNRVIETLSKVPGLGDLPVLGKIFRSRSTQKSADELLVVVTPHFVKPLTPEERAK 424


>gi|171921001|gb|ACB59184.1| RcpA [Actinobacillus suis ATCC 33415]
          Length = 460

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 92/419 (21%), Positives = 174/419 (41%), Gaps = 25/419 (5%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
               K  ++   +  +++    +  V VS P  AD  +    T  L+ K  G+A ++   
Sbjct: 24  TAAAKTFTLEQGQSQLIKTDAKIDTVFVSSPDIADYEILDDNTFMLYAKAEGRAEIVAFD 83

Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            DG  +            +IA     ++    +SN+ V+ +    V+ G  +   +S+  
Sbjct: 84  VDGTPLTEDFINVNNAINNIAATNEQIQTRFPNSNLSVKKIGKAYVIEGKAKNAAESEEI 143

Query: 161 VELSETFLS-------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
             +    L              +           + ++N  N     Q+ +K+T+AEV +
Sbjct: 144 NRIVGESLGAGKKVVEAKVEGSEDAIPFLDKYQYEGIINNANEEDATQINVKLTVAEVNK 203

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
               +IG   +    +   +   AA   G F   GG  ++   ++  +   +L AL+   
Sbjct: 204 TFSDEIGINWNNLSGNFFRNLGSAA-INGGFGKSGGQLAL---VNSNNLNVLLSALDNQN 259

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             + LAEP ++ +SG++A    GG+  +    +  G  +V   ++G+ L     V    R
Sbjct: 260 NGKILAEPNISMLSGETADILVGGEVPF-VQRNRDGELNVLYKEFGIKLAVGAKVQKSDR 318

Query: 328 IGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +   VS         D  +P +  R++ +T E+ +G + +++GLL     +  + +
Sbjct: 319 IRLLLSQSVSTIAGNYEIDDNHIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKV 378

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           P L  +PILGA FR++  +RE  E+ + AT  LVKPV    +  P   +      + FF
Sbjct: 379 PFLGDVPILGAFFRSANSSRESKELVVVATVNLVKPVDGSQILYPT--FENTGTMERFF 435


>gi|152981036|ref|YP_001355006.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille]
 gi|151281113|gb|ABR89523.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille]
          Length = 429

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 109/437 (24%), Positives = 194/437 (44%), Gaps = 37/437 (8%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS-----PRTMYLFGKN 93
            S   + +   +++ + + + L+ P D++ + V+DP  AD+++       P ++ L GK 
Sbjct: 14  TSFPALAEEMNLTVRVREQLQLKTPADLERIAVADPEVADILIIKGSNKRPGSIMLVGKK 73

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  +V     +G       + +       +  L+  + +    +++ SD+  L G   +
Sbjct: 74  PGSTSVTAWQRNGPT-KVWQVSV-------QSALQGLLPEEGAELQINSDSASLRGQSPS 125

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           +      V      + +           +K ++   +A    V + V I E  R++LK+ 
Sbjct: 126 LLSHANTVAAGTQAVGK-----------EKFLDTSTVATSGMVQIDVQIVEFSRNVLKEA 174

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIR 270
           GF   I   + G + SF  +     +S      V     +L   S    +  +E+    R
Sbjct: 175 GFDF-IFNQNRGATFSFGLNNFSTILSSTVQTPVSQAFNLLGSTSVNARVKLIEQNGLAR 233

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LA P+L A+SGQSASF +GG+      S   G T++    +G+ L  TPTVLS  RI L
Sbjct: 234 VLARPSLIALSGQSASFLAGGELPVPQ-SGGLGTTTIIYKAFGIGLTVTPTVLSANRIAL 292

Query: 331 RIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           ++  E S+         N   +P+   R+ +TT+EL  G + V+ GL+    +     +P
Sbjct: 293 KVAPEASDLDYANAIVTNNMMIPAISTRRTETTLELGDGESFVIGGLVSRTTKSNVNKVP 352

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFF 445
            L  +PILG  FR+ +++++E E+ I ATP LVKP+A    L  P D     D     + 
Sbjct: 353 FLGDLPILGPFFRSMQYSQDEKELVIIATPHLVKPIAKGAQLPLPGDDKERRDTPANAWS 412

Query: 446 NRVNKIYGPKEASEVEG 462
              + + G     ++ G
Sbjct: 413 ---SYVMGAAGRDDLPG 426


>gi|134295595|ref|YP_001119330.1| type II and III secretion system protein [Burkholderia
           vietnamiensis G4]
 gi|134138752|gb|ABO54495.1| type II and III secretion system protein [Burkholderia
           vietnamiensis G4]
          Length = 443

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 110/445 (24%), Positives = 181/445 (40%), Gaps = 45/445 (10%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP---RTMYLFGKNVGQANVI 100
                 I + +     +     +Q V V DP  ADV++       ++ L  K  G  NV+
Sbjct: 21  ASASGTIELAVGAQRQIAAGRALQRVAVGDPAIADVLIMKGSRAGSVLLTAKAPGTTNVM 80

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           +      +    ++ +      ++   +  +  S  +V+    T VL G   ++   +RA
Sbjct: 81  VWERGHDEPTVWNVEV------VDAAAQAVLDASTPQVKAYGGTSVLRGTAGSLDAHERA 134

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217
           V +++    +             V++   +AG++ V + V + E  R +LKQ+GF     
Sbjct: 135 VAVAKNMSPKGA-----------VIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQ 183

Query: 218 ------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
                        +   + G     AA            F++            L  LE 
Sbjct: 184 SNGFSFGSFSPGGVQSYNGGSGPGTAAYIPTLGAPVASAFNLVVNAAGHGIFADLSLLEA 243

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R LAEPTL A+SGQSASF +GG+    +     G+T++    YGV L  TPTVLSP
Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLSP 302

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+       
Sbjct: 303 NRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A   +           +  
Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAVLPAT-----PGELA 417

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
                 V + Y    AS      + 
Sbjct: 418 EQHDGPVWRSYLGGAASPDAAPGFS 442


>gi|312882144|ref|ZP_07741893.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370190|gb|EFP97693.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 456

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 102/432 (23%), Positives = 192/432 (44%), Gaps = 49/432 (11%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    +QV + +  V +S+P  AD  V +  T+ ++   VGQ+ +I+ G D   +L
Sbjct: 34  SITLNDGQHIQVNMPIGKVFISNPEVADYKVINENTLVVYANEVGQSRLIVYGTDSSVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ +++ +   L+    D  ++V+ +   V + G+V + +       L  T L +
Sbjct: 94  SDRIVVDLNLSEVRRQLKFHYPDVQVKVQSIGTQVAVSGVVDSEETRDDIYRLVATLLGR 153

Query: 171 SGRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++                         N + + ++  + +    QV +K++IA V 
Sbjct: 154 EKTEKWNQVEKLTFESENTRYEEPESMVFARNMTWEGIIERIKVTTTQQVNVKISIAHVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               + +G      G+  G                     V    +  +  T++ AL   
Sbjct: 214 ESFGQTVGIDWGSIGARVGSF-------------------VFDQFNAANLGTIISALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + LAEP LT +SG+SASF +GG+     ++      +V+   +G+ L+ T  VLS  
Sbjct: 255 EIAQVLAEPNLTVLSGESASFLAGGEVPVIVLNDRN--LTVSFKQFGIGLNLTAKVLSRD 312

Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I +++   VSE    +      +P + +RKA TTVEL  G + +L GL+     +  + 
Sbjct: 313 KIQMQLAPSVSEVEGFVEFEGLKVPQFTLRKALTTVELSDGDSFILGGLMSSADFEEMQK 372

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +P++  IP+ GA FR ++  R+ TE+ I AT  LV+PV   D+  P  + +     + + 
Sbjct: 373 VPVIGDIPLFGAAFRKAKTERKRTELIIVATVNLVEPVRPNDIQVP--YINKTSTLERWL 430

Query: 445 FNRVNKIYGPKE 456
               +  + P  
Sbjct: 431 NINSDDSFQPSS 442


>gi|238790280|ref|ZP_04634054.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii
           ATCC 33641]
 gi|238721630|gb|EEQ13296.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii
           ATCC 33641]
          Length = 463

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 112/441 (25%), Positives = 193/441 (43%), Gaps = 50/441 (11%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + I +   +   L+V   V  V +S+P  AD  V   + + +F +  G+A++ + G D 
Sbjct: 35  SQDIYMEKGEARTLKVNAAVDTVFISNPDVADYEVIDEKQVVIFARENGRASLEIYGGDN 94

Query: 107 K-QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
              ++ + I+++  + +++  +      S+I ++   +  VL G V      +       
Sbjct: 95  NATLMTMSIIVDPLLGNIKKEMAEEYPGSDIDIKKYGEGYVLTGTVPDEDAREGIYMTVG 154

Query: 166 TFLSQSGRNQYANSSSKKV------------------------MNLLNIAGEDQVTLKVT 201
             L    +          V                        +N L +   +QV +K+T
Sbjct: 155 QALGLKRKETELKIKPGSVNSIGGDDSNDTPIDFMQKVVFEGLVNRLKLPTTNQVNVKLT 214

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           + EV +  +  +G   S  G  +G                      K   D  S  ++++
Sbjct: 215 VVEVTKTFMDNVGVDWSNAGLGAGQFN-----------------LTKFRFDANSLNSLIY 257

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           A++  +  R LAEP L+ +SG++A F  GG+    T S     +++T  ++GV L     
Sbjct: 258 AIKNDSIARILAEPNLSVLSGETADFLVGGEIPIVTTS--MAGSTITYKEFGVKLVIAAK 315

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           V S  +I L +  E+S        GD  +P  R RKA TTVEL  G + VL GLL ++ +
Sbjct: 316 VESNNKIKLNLSEEISSLDGQYALGDLNIPKLRSRKARTTVELGDGDSFVLGGLLNENEK 375

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
           +   GIP +S IPILGALFR +   RE TE+ + AT  LVKP++   +  P  ++   + 
Sbjct: 376 ESLSGIPFISDIPILGALFRRTGAERERTELVVVATVNLVKPISFNKVVLP--NFVRSNL 433

Query: 440 AKAFFFNRVNKIYGPKEASEV 460
           A+ FF   ++ I   K   +V
Sbjct: 434 AERFF--NISAIRESKSRKQV 452


>gi|194335913|ref|YP_002017707.1| type II and III secretion system protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308390|gb|ACF43090.1| type II and III secretion system protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 510

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 108/500 (21%), Positives = 194/500 (38%), Gaps = 64/500 (12%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKIS-IGLNKVIILQVPVD 65
              + +   L  + P      P          ++ V       I  + L +  + +    
Sbjct: 13  CRMSALVALLVGTVPMATMASPEPVRRRDDSYVTVVSEMTAPSIYLVPLGESRVYRFAQP 72

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           ++ V + DP  AD ++ +   +YL GK +G  N+ +   +G  + +  + + R    L+ 
Sbjct: 73  IKRVAMGDPKVADYIMLNRFEVYLLGKKMGSTNLAVWDQNGN-LTSSPVQVSRGTTALQA 131

Query: 126 TLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--------------- 169
            L+      N I +  +   +VL G V     ++    L  ++                 
Sbjct: 132 LLKVLFPKENDIHLLALGPALVLSGSVSDALVAESVARLVRSYFGGSVSSGTPESALVGT 191

Query: 170 --------------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
                                     ++  +   + S++ V+NLL +    QV L+V IA
Sbjct: 192 DSKPFTGIIEEMSKDVVFSKTESHSKETTTHGGESDSTRGVVNLLKVRDSQQVRLEVCIA 251

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           +V R  ++ +G     T           +     FVS     ++       +    + A 
Sbjct: 252 QVSRTFIESLGISFFKT-----SGDIQGSTLLSGFVSNATLNNLLLGRLGQANGIKMVAD 306

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YG 313
            + +  + LAEPT+  +SG+   F  GG+             ++  +D          YG
Sbjct: 307 RKPSLFKVLAEPTIVTMSGKEGFFLVGGKIYVPVRVIDYSPINLQEYDKYYISYKEYLYG 366

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           V L F P VL  GRI L++ +EVSEP           ++P +++    T V++  G  +V
Sbjct: 367 VGLRFMPVVLDAGRISLKVVSEVSEPDTESATSGTKANLPLFKISTVSTNVQMNEGENLV 426

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + GL  D+     + +PLLS+IPILGALFR+++ N E+TE+ +   P LVK  A      
Sbjct: 427 IGGLKLDNFANAIDSVPLLSEIPILGALFRDTKKNAEKTELMVIIRPTLVKGSATM-PEL 485

Query: 430 PDDHYSVEDDAKAFFFNRVN 449
           P D        + F   ++ 
Sbjct: 486 PTDRVIPPTRKELFLDGKLE 505


>gi|332284569|ref|YP_004416480.1| putative outer membrane protein [Pusillimonas sp. T7-7]
 gi|330428522|gb|AEC19856.1| putative outer membrane protein [Pusillimonas sp. T7-7]
          Length = 474

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 110/447 (24%), Positives = 191/447 (42%), Gaps = 36/447 (8%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           S     +   +++ + +V +L +P DV  V V D    + V    + + +F ++ G   +
Sbjct: 18  SGAAPSQEAMLNLQVGEVKVLGIP-DVARVAVGDGHIINAVATDEKEVIVFARHEGSTAL 76

Query: 100 ILIGHDGKQMLNLDILIER-DIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDS 157
            +   DG++     I +    +  ++  LR  +    + ++  V D +V+ G   +  D 
Sbjct: 77  QIWSADGQR-WQYQIEVAPEGLRQIQQELRSVLERIPHAQLSAVGDKLVIEGDDLSDGDR 135

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +R  EL++ +               ++++    +  +  V L V + EV R  L+++G +
Sbjct: 136 ERIAELAKHY--------------PQLLDFTGQVGWDRMVLLDVQVVEVPRIQLQELGLR 181

Query: 217 HSITGSSSGPSKSFAADFGGK-----------FVSEGGDFSVKGVLDRFSFETVLHALER 265
            + T +  G S   A D G K            +      +             ++A+ +
Sbjct: 182 WN-TATDGGLSAGLAWDGGSKRLDDRPSESVMPIGFPATMAAGYFGVNALLSARINAMAQ 240

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
                 LA+P L A SG +A F +GG+  Y TV  + G T+     YGV L  TP +   
Sbjct: 241 KGTAVVLAQPQLLARSGSTAEFLAGGEVPYSTV-DANGNTNTAFKPYGVSLRITPQIERN 299

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G +  RI+ EVS     ++  + PS + R+A T   + SG T+VLAG L  +     + +
Sbjct: 300 GAVRSRIEVEVSSVDNALSVPNGPSLKTRRAATEFNVRSGQTLVLAGFLSREATHNVDKV 359

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV---KPVAMRDLSRPDDHYSVEDDAKA 442
           P L  IPILG LF++SRF R ETE+ I  TP LV    P   R +   +D          
Sbjct: 360 PGLGDIPILGELFKSSRFQRHETELAIFVTPVLVGADHPGLARRVQLGEDILKTAFPQAP 419

Query: 443 FFFNRVNKIYGP-KEASEVEGQNYKGA 468
                +  +  P   A +V    ++G 
Sbjct: 420 IINASLAPLPKPLVAADQVSWDPWQGP 446


>gi|218459699|ref|ZP_03499790.1| cpaC pilus assembly Q protein [Rhizobium etli Kim 5]
          Length = 409

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 112/421 (26%), Positives = 190/421 (45%), Gaps = 33/421 (7%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59
           M   +R      S+   ++  S         A  A      V +GK  + +++  N+ + 
Sbjct: 1   MANGKRRIARTKSLAALAAVFSACVCLGPGFAGFASAQEKSVTLGKSVQHVTLPPNETLT 60

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           L       D+++      DVV  S R++++ GK +G  N+ + G D   +  +DI +  D
Sbjct: 61  LNTGQPFGDLVIGSADMIDVVPLSDRSLFVRGKKIGATNISVYGDDKSLLGVIDIRVASD 120

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
            + +   +R     + +RV   +D + L G+VR   + QR +E+++++            
Sbjct: 121 FSEVASAIRSAAPSARVRVVNSNDRIRLVGVVRDGIELQRVLEIAQSY------------ 168

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF----- 234
           S + V+N L ++   QV L+V I E  R   + +G   S  GS+     + +        
Sbjct: 169 SEQPVLNQLRVSDSQQVMLEVRIIEASRQTGRDLGIGWSGQGSNGIGKATTSQGITVNDD 228

Query: 235 -------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                            +  G   +    +   + + V++ALE+   +R LA+P L A+S
Sbjct: 229 GNLARTLLDPKGAATGMLPFGQLIAKVLQISGGNIDVVINALEQKGLVRRLAQPNLIAMS 288

Query: 282 GQSASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           G +ASF +GG+      T + +T AT      +GV L F P VL  G I L I+ EVSE 
Sbjct: 289 GSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGVINLEIEPEVSEL 348

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +N    P +  R A TTV L  G +  +AGLL+    +  + +P L +IP+LGALFR
Sbjct: 349 DPAINVNGNPGFISRAASTTVALRDGQSFAMAGLLQSINAKDIQQLPGLGQIPVLGALFR 408

Query: 400 N 400
           +
Sbjct: 409 S 409


>gi|320101627|ref|YP_004177218.1| type II and III secretion system protein [Isosphaera pallida ATCC
           43644]
 gi|319748909|gb|ADV60669.1| type II and III secretion system protein [Isosphaera pallida ATCC
           43644]
          Length = 712

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 105/517 (20%), Positives = 193/517 (37%), Gaps = 102/517 (19%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKA-------DVVVH-------SPRTMYLFG 91
              ++S+ + +  ++Q+       ++ +P  A       DV            R   ++G
Sbjct: 170 PSVELSVVVGRGKVIQLREQPLRFILGNPRIATLSFPPSDVQSLAQLDRPSDARLFVVYG 229

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
              G   + +   +        + +  D   ++  +R     +++ V   ++ ++L G V
Sbjct: 230 IQAGTTTLTIWDKNN-VPTTFLVRVSVDTLDIQNQIRAVFPGTDVTVRQSANQIILEGQV 288

Query: 152 RTIQDSQRAVELSETFL-----------------------------SQSGRNQYANSSSK 182
              +     + L    L                              ++  ++  +  S 
Sbjct: 289 PDTKTMNEVIRLVNGLLVSNQAGEVRAPTGAGGGGGGQSVGAFAAAERALGDEAPSGISP 348

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGP---------- 226
           +++N L + G  Q+ LKV +AE+ R  +++IG         S+ GS  G           
Sbjct: 349 QIINRLRVPGPRQILLKVKLAELNRTAIREIGANWLRGRNNSLIGSQIGGIAGFTTETNT 408

Query: 227 --SKSFAADFGGKFVSEGG-----------------------------DFSVKGVLDRFS 255
             + +FAA   G+    GG                                + G+     
Sbjct: 409 QMTAAFAAPSFGRPGIAGGQPIPGSVTGSLIQGIDTLLNATAGSALQPSAQLFGIFRAGE 468

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTT 309
           F+  L+AL        LAEP LTA+ GQ A   +GG+  +                ++  
Sbjct: 469 FDLFLNALRTNNLATILAEPNLTALDGQPARVIAGGEIPFPVPQLGAGGGGGGAVITIQF 528

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSG 365
             +G +L F P +L    I L ++   S P  G    +N   +P +  R A T V+L  G
Sbjct: 529 RPFGAILTFLPQILEDDLIRLDVEPVFSTPNQGLGTSINGTAVPGFNTRSARTVVQLREG 588

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T+ +AGL++ + Q     IPLL   PI+G LF  +RF   ETE+ +  TP+L+ P+   
Sbjct: 589 ETLAIAGLIQKNNQAATNRIPLLGDAPIVGPLFSRNRFETLETELIVIVTPYLIAPMGEG 648

Query: 426 DLSR-PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           ++ + P D+    +D + F   R     G    S ++
Sbjct: 649 EVPKVPTDYVDEPNDIEFFILGRTEGKTGIPHRSTIQ 685


>gi|165975974|ref|YP_001651567.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876075|gb|ABY69123.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 462

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 93/420 (22%), Positives = 171/420 (40%), Gaps = 27/420 (6%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              K  ++   +  +++    +  + VS    AD  +    +  L+ K  G++ VI    
Sbjct: 25  AMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDA 84

Query: 105 DGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +G  +            +IA     ++    +SN+ V+ V    VL G  +   +S    
Sbjct: 85  NGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEIN 144

Query: 162 ELSETFLSQSGR---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
            +    L    +                       + V+N  N     Q+ +K+T+AEV 
Sbjct: 145 RIVGESLGAGKKVIETKLKHNNSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEVN 204

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +    +IG   S    +   +    A   G F   GG  ++   ++  +   ++ AL+  
Sbjct: 205 KTFSDEIGINWSNLSGNFFRNLG-NAGIQGNFNKNGGQLAL---VNSNNLNVLISALDNQ 260

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V    
Sbjct: 261 NNGKILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSD 319

Query: 327 RIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           RI L +   VS         +  +P +  R++ +T E+ +G + +++GLL     +  + 
Sbjct: 320 RIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK 379

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV    +  P   +      + FF
Sbjct: 380 VPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFF 437


>gi|46143341|ref|ZP_00204447.1| COG4964: Flp pilus assembly protein, secretin CpaC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208037|ref|YP_001053262.1| rough colony protein A [Actinobacillus pleuropneumoniae L20]
 gi|126096829|gb|ABN73657.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 462

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 172/420 (40%), Gaps = 27/420 (6%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              K  ++   +  +++    +  + VS    AD  +    +  L+ K  G++ VI    
Sbjct: 25  AMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDA 84

Query: 105 DGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +G  +            +IA     ++    +SN+ V+ V    VL G  +   +S    
Sbjct: 85  NGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEIN 144

Query: 162 ELSETFLSQSGR---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
            +    L    +                       + V+N  N     Q+ +K+T+AEV 
Sbjct: 145 RIVGESLGAGKKVIETKLKHNDSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEVN 204

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +    +IG   S    +   +   AA   G F   GG  ++   ++  +   ++ AL+  
Sbjct: 205 KTFSDEIGINWSNLSGNFFRNLGNAA-IQGNFNKNGGQLAL---VNSNNLNVLISALDNQ 260

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V    
Sbjct: 261 NNGKILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSD 319

Query: 327 RIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           RI L +   VS         +  +P +  R++ +T E+ +G + +++GLL     +  + 
Sbjct: 320 RIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK 379

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV    +  P   +      + FF
Sbjct: 380 VPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFF 437


>gi|307245412|ref|ZP_07527500.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254367|ref|ZP_07536205.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258825|ref|ZP_07540557.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261005|ref|ZP_07542687.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306853753|gb|EFM85970.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862666|gb|EFM94622.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867176|gb|EFM99032.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869307|gb|EFN01102.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 462

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 172/420 (40%), Gaps = 27/420 (6%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              K  ++   +  +++    +  + VS    AD  +    +  L+ K  G++ VI    
Sbjct: 25  AMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDA 84

Query: 105 DGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +G  +            +IA     ++    +SN+ V+ V    VL G  +   +S    
Sbjct: 85  NGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEIN 144

Query: 162 ELSETFLSQSGR---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
            +    L    +                       + V+N  N     Q+ +K+T+AEV 
Sbjct: 145 RIVGESLGAGKKVIETKLKHNDGEENVPFLDKYQYEGVINNANEENATQINVKLTVAEVN 204

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +    +IG   S    +   +   AA   G F   GG  ++   ++  +   ++ AL+  
Sbjct: 205 KTFSDEIGINWSNLSGNFFRNLGNAA-IQGNFNKNGGQLAL---VNSNNLNVLISALDNQ 260

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V    
Sbjct: 261 NNGKILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSD 319

Query: 327 RIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           RI L +   VS         +  +P +  R++ +T E+ +G + +++GLL     +  + 
Sbjct: 320 RIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK 379

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV    +  P   +      + FF
Sbjct: 380 VPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFF 437


>gi|190149865|ref|YP_001968390.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307249759|ref|ZP_07531737.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307256574|ref|ZP_07538355.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307263189|ref|ZP_07544810.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914996|gb|ACE61248.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306858174|gb|EFM90252.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306864984|gb|EFM96886.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306871551|gb|EFN03274.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 462

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 172/420 (40%), Gaps = 27/420 (6%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              K  ++   +  +++    +  + VS    AD  +    +  L+ K  G++ VI    
Sbjct: 25  AMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDA 84

Query: 105 DGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +G  +            +IA     ++    +SN+ V+ V    VL G  +   +S    
Sbjct: 85  NGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEIN 144

Query: 162 ELSETFLSQSGR---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
            +    L    +                       + V+N  N     Q+ +K+T+AEV 
Sbjct: 145 RIVGESLGAGKKVIETKLKHNNSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEVN 204

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +    +IG   S    +   +   AA   G F   GG  ++   ++  +   ++ AL+  
Sbjct: 205 KTFSDEIGINWSNLSGNFFRNLGNAA-IQGNFNKNGGQLAL---VNSNNLNVLISALDNQ 260

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V    
Sbjct: 261 NNGKILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSD 319

Query: 327 RIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           RI L +   VS         +  +P +  R++ +T E+ +G + +++GLL     +  + 
Sbjct: 320 RIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK 379

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV    +  P   +      + FF
Sbjct: 380 VPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFF 437


>gi|238762407|ref|ZP_04623378.1| Type II/III secretion system protein [Yersinia kristensenii ATCC
           33638]
 gi|238699392|gb|EEP92138.1| Type II/III secretion system protein [Yersinia kristensenii ATCC
           33638]
          Length = 379

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/371 (26%), Positives = 172/371 (46%), Gaps = 25/371 (6%)

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
               ++ ++ K  G A  IL   + + +    +L+   I      ++    +S+I +  +
Sbjct: 1   MGKNSIIVYAKQEGTAEFILFNQNNQPIKKSAVLVNNTITAANKRIQIEYPESDIEINKI 60

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQV 196
             + +L GM  + +     V +    +         +          ++N + + G +QV
Sbjct: 61  GTSYILTGMAESEEAKDTIVSIIGEAIGSKKTIDTDSQYLNTPEYYGIINKIKLMGTNQV 120

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            +K+TIAEV +D  + IG   S  G  SG  +    +    F + G              
Sbjct: 121 NVKLTIAEVTKDFSENIGVDWSTIGDFSGSFQLVKLNSLNNFSARG-------------I 167

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
             ++HA+   +  R LAEP L+ +SG+SASF  GG+     V+++  +T +T  ++G+ L
Sbjct: 168 SALVHAINDDSIARVLAEPNLSVLSGESASFLVGGEIP--MVNTTQNSTVITYKEFGIKL 225

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           +    V    RI + +  EVS      N       PS+R RKA TT+EL  G + +L GL
Sbjct: 226 NIGAKVNEKKRIRIMLDEEVSSIDKVFNIDGGNAYPSFRTRKAATTLELGDGESFILGGL 285

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           + +  ++  + IP +  IPILGA FRN+   + +TE+ + AT  LV+PV+ R++  P  +
Sbjct: 286 ISNSERESLKKIPFIGDIPILGAFFRNAETRKNQTELVVVATVNLVRPVSEREVELP--N 343

Query: 434 YSVEDDAKAFF 444
           +      + FF
Sbjct: 344 FMHTSTLERFF 354


>gi|121607248|ref|YP_995055.1| type II and III secretion system protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121551888|gb|ABM56037.1| type II and III secretion system protein [Verminephrobacter
           eiseniae EF01-2]
          Length = 714

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/435 (21%), Positives = 178/435 (40%), Gaps = 41/435 (9%)

Query: 24  AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
           A+ P    +   +      +  +  +I + + +  +   P  V  + V +          
Sbjct: 62  ARKPAPTPSQPYLPIRKQDDQAQVPEIEMFVGESRVFPSPG-VARIAVGNGKVLTAAALD 120

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVS 142
            R + +F   VG +++ +   DG+       ++  D +     +  F++  +N +  ++ 
Sbjct: 121 EREVIVFANEVGTSSLFVWNEDGRYQRVKINVVPGDTSRYAREIAAFLSTIANTKASIIG 180

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVT 201
           D V++ G   +  D ++  +L + +               +++N  N  G +Q V + V 
Sbjct: 181 DKVIVEGDNLSDIDLRKIEDLRKHY--------------PQIVNFTNQIGWEQMVLMDVK 226

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPS------------------KSFAADFGGKFVSEGG 243
           + E   + L+++G + +  G +S                             G  +    
Sbjct: 227 VVEFPVNELRELGLRWAAKGGASIGGIWSPIRRVHQDGLRIDVESPPITAADGDLIPLPK 286

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             ++   L+       L  L        LA+P L+A +G  A F +GG++ Y  V+SS  
Sbjct: 287 GLNILSALN-MGLGAKLDLLASQGKASILAQPQLSARNGAKAEFLAGGEYPY--VASSIN 343

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
             +V    YG+ L  TP V   G I   I +EVS     ++    P+  VR+  T   + 
Sbjct: 344 GPTVMFKPYGIRLKITPRVDRNGVIRAEIDSEVSNIDPSISTAAGPALSVRRTFTEFNVQ 403

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK--- 420
           +G T+VL+GL+     Q  + +P L  +P+LGALFR+ RF  +ETE+ +  TP ++    
Sbjct: 404 NGETMVLSGLMSRKTSQNIDKVPFLGDLPVLGALFRSKRFQNDETELVVFVTPTVINSQS 463

Query: 421 PVAMRDLSRPDDHYS 435
           P  ++ + R  D   
Sbjct: 464 PGLVQRIERITDDLR 478


>gi|172060495|ref|YP_001808147.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
 gi|171993012|gb|ACB63931.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
          Length = 461

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 112/445 (25%), Positives = 176/445 (39%), Gaps = 45/445 (10%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVI 100
                 I + +     +     +Q V V DPT ADV++       ++ L  K  G  NV+
Sbjct: 39  ASASGTIELAVGAQRQISAGRALQRVAVGDPTIADVLIMKGSRSGSVLLTAKAPGATNVM 98

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L      +     I +      ++      +  S  +V+    T VL G   T+   +RA
Sbjct: 99  LWERGHDEPTVWSIEV------VDAAAHAVLDGSMPQVKAYGGTSVLRGTSATLDAHERA 152

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217
             +++             S    V++   +AG+  V + V + E  R +LKQ+GF     
Sbjct: 153 ATVAKNM-----------SPKGTVIDRSTLAGKSVVQVDVRVVEFSRSVLKQVGFNFFKQ 201

Query: 218 ------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
                        +   + G     A             F++            L  LE 
Sbjct: 202 SNGFSFGSFSPGGVQSYNGGSGPGTAGYIPALGAPVASAFNLVVNAAGRGIFADLSLLEA 261

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R LAEPTL A+SGQSASF +GG+    +     G+T++    YGV L  TPTVL P
Sbjct: 262 NNMARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLGP 320

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+       
Sbjct: 321 NRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 380

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A   +           +  
Sbjct: 381 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAVLPAT-----PGELS 435

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
                 V + Y    AS      + 
Sbjct: 436 EQRDGPVWRSYLGGAASPDAAPGFS 460


>gi|167570105|ref|ZP_02362979.1| type II/III secretion system protein [Burkholderia oklahomensis
           C6786]
          Length = 434

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 122/454 (26%), Positives = 192/454 (42%), Gaps = 50/454 (11%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH--SPRTMY 88
            A AA +   ++  G  +++S+G N          VQ V V DP  ADV+V      ++ 
Sbjct: 12  AARAAEMGTIELATGAQRQVSVGRN----------VQRVAVGDPNVADVLVVKGGRGSVL 61

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           L  K  G  ++++      +     + +    A      R  +   +  V+    T V+ 
Sbjct: 62  LVAKAAGSTSLMVWERGRDEPAVYTVNVVSGAA------RALLDGGSPSVKAYGGTAVVS 115

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G   T+    RA+ L +    + G           V++   + G++ V + V + E  R 
Sbjct: 116 GSAATLDAHARALALGKGMAGKDG----------GVVDASTVGGKNVVQVDVRVVEFSRS 165

Query: 209 ILKQIGFQH--SITGSSSGPS--KSFAADFGGKFVS--------EGGDFSVKGVLDRFSF 256
           +LKQ G        G + G       A+  GG   S            F++         
Sbjct: 166 VLKQAGLNFFKQNNGFTFGAFAPSGLASVTGGATPSMSVSANIPISSAFNLVVGSATRGL 225

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
              L  LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L
Sbjct: 226 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 284

Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
             TPTVLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ G
Sbjct: 285 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGG 344

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L+  +     + +P L  +PI+G  F++  + + + E+ I  TP LV P+A ++ S P  
Sbjct: 345 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 401

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
             +   +        V + Y     S   G  + 
Sbjct: 402 --ATPGELSEQRDGPVWRSYLGGALSPDAGPGFS 433


>gi|221213139|ref|ZP_03586115.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD1]
 gi|221167352|gb|EED99822.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD1]
          Length = 443

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 182/445 (40%), Gaps = 45/445 (10%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100
              G  I + +     +     +Q V V DP  ADV++        + +  K  G  NV+
Sbjct: 21  ASAGGTIELAVGAQRQISAGRALQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGATNVM 80

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L      +    ++ +      ++      + DS  RV     T VL G   ++   +RA
Sbjct: 81  LWERGRDEPTVWNVEV------VDAAAHAVLDDSTPRVNTYGGTSVLRGTAASLDAHERA 134

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--S 218
           V + +    +             V++   +AG++ V + V + E  R +LKQ+GF     
Sbjct: 135 VAVGKNVSGKGA-----------VIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQ 183

Query: 219 ITGSSSGPSKSFAADF--GGKFVSEGGDFSVKGVLDRFSFETVLHA-----------LER 265
             G S G           GG      G     G     +F  V++A           LE 
Sbjct: 184 SNGFSFGSFSPGGVQSYNGGAGPGSAGYLPTLGAPVASAFNLVVNAAGRGIFADLSLLEA 243

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R LAEPTL A+SGQSASF +GG+    +     G+T++    YGV L  TPTVLSP
Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLSP 302

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+       
Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A             E    
Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPATPGQLSEQRD- 421

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
                 V + Y    AS      + 
Sbjct: 422 ----GPVWRSYLGGAASPDAAPGFS 442


>gi|221197781|ref|ZP_03570827.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD2M]
 gi|221204661|ref|ZP_03577678.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD2]
 gi|221175518|gb|EEE07948.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD2]
 gi|221181713|gb|EEE14114.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD2M]
          Length = 443

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 182/445 (40%), Gaps = 45/445 (10%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100
              G  I + +     +     +Q V V DP  ADV++        + +  K  G  NV+
Sbjct: 21  ASAGGTIELAVGAQRQISAGRALQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGATNVM 80

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L      +    ++ +      ++      + DS  RV     T VL G   ++   +RA
Sbjct: 81  LWERGRDEPTVWNVEV------VDAAAHAVLDDSTPRVNTYGGTSVLRGTAASLDAHERA 134

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--S 218
           V + +    +             V++   +AG++ V + V + E  R +LKQ+GF     
Sbjct: 135 VAVGKNVSGKG-----------TVIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQ 183

Query: 219 ITGSSSGPSKSFAADF--GGKFVSEGGDFSVKGVLDRFSFETVLHA-----------LER 265
             G S G           GG      G     G     +F  V++A           LE 
Sbjct: 184 SNGFSFGSFSPGGVQSYNGGAGPGSAGYLPTLGAPVASAFNLVVNAAGRGIFADLSLLEA 243

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R LAEPTL A+SGQSASF +GG+    +     G+T++    YGV L  TPTVLSP
Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLSP 302

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+       
Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A             E    
Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPATPGQLSEQRD- 421

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
                 V + Y    AS      + 
Sbjct: 422 ----GPVWRSYLGGAASPDAAPGFS 442


>gi|83718419|ref|YP_443059.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|167582062|ref|ZP_02374936.1| type II/III secretion system protein [Burkholderia thailandensis
           TXDOH]
 gi|167620224|ref|ZP_02388855.1| type II/III secretion system protein [Burkholderia thailandensis
           Bt4]
 gi|257139289|ref|ZP_05587551.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|83652244|gb|ABC36307.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 441

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 120/454 (26%), Positives = 192/454 (42%), Gaps = 50/454 (11%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MY 88
            A AA +   ++  G  ++I++G            VQ V + DP+ ADVVV       + 
Sbjct: 19  AARAAEMGTIELATGAQRQIAVGRG----------VQRVAIGDPSVADVVVIKGGRGGVL 68

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           L  K  G  N+++      +     + +    A      R  +   +  V+  + T V+ 
Sbjct: 69  LVAKAAGSTNLMVWERGRDEPSVYTVNVASGAA------RALLDGGSPSVKAYNGTAVVS 122

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G   T+    RA+ + +    + G           V++   + G++ V + V + E  R 
Sbjct: 123 GSAATLDAHARALAVGKGMAGKDG----------GVVDASTVGGKNVVQVDVRVVEFSRS 172

Query: 209 ILKQIGFQH-----SITGSSSGPSKSFAADFGGKF-------VSEGGDFSVKGVLDRFSF 256
           +LKQ G          T  S  P+   +   GG         +     F++         
Sbjct: 173 VLKQAGLNFFKQSNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGL 232

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
              L  LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L
Sbjct: 233 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 291

Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
             TPTVLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ G
Sbjct: 292 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGG 351

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L+  +     + +P L  +PI+G  F++  + + + E+ I  TP LV P+A ++ S P  
Sbjct: 352 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 408

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
             +   +        V + Y     S   G  + 
Sbjct: 409 --ATPGELSEQRDGPVWRSYLGGVLSPDAGPGFS 440


>gi|167562915|ref|ZP_02355831.1| type II/III secretion system protein [Burkholderia oklahomensis
           EO147]
          Length = 432

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 122/454 (26%), Positives = 192/454 (42%), Gaps = 50/454 (11%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH--SPRTMY 88
            A AA +   ++  G  +++S+G N          VQ V V DP  ADV+V      ++ 
Sbjct: 10  AARAAEMGTIELATGAQRQVSVGRN----------VQRVAVGDPNVADVLVVKGGRGSVL 59

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           L  K  G  ++++      +     + +    A      R  +   +  V+    T V+ 
Sbjct: 60  LVAKAAGSTSLMVWERGRDEPAVYTVNVVSGAA------RALLDGGSPSVKAYGGTAVVS 113

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G   T+    RA+ L +    + G           V++   + G++ V + V + E  R 
Sbjct: 114 GSAATLDAHARALALGKGMAGKDG----------GVVDASTVGGKNVVQVDVRVVEFSRS 163

Query: 209 ILKQIGFQH--SITGSSSGPS--KSFAADFGGKFVS--------EGGDFSVKGVLDRFSF 256
           +LKQ G        G + G       A+  GG   S            F++         
Sbjct: 164 VLKQAGLNFFKQNNGFTFGAFAPSGLASVTGGATPSMSVSANIPISSAFNLVVGSATRGL 223

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
              L  LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L
Sbjct: 224 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 282

Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
             TPTVLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ G
Sbjct: 283 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGG 342

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L+  +     + +P L  +PI+G  F++  + + + E+ I  TP LV P+A ++ S P  
Sbjct: 343 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 399

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
             +   +        V + Y     S   G  + 
Sbjct: 400 --ATPGELSEQRDGPVWRSYLGGALSPDAGPGFS 431


>gi|296124072|ref|YP_003631850.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
 gi|296016412|gb|ADG69651.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
          Length = 772

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 110/483 (22%), Positives = 192/483 (39%), Gaps = 62/483 (12%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
            + +      + + +   +  ++    +V    ++DP   DVV + PR + + G + G  
Sbjct: 163 RLIESMPSSEEDLEVIHRRSQLIVTRANVIRAAIADPNVIDVVQYGPREISIIGVSRGTT 222

Query: 98  NVILIGHDGKQMLNLDILIERDIA----------HLEMTLRRFIADSNIRVEMVSDTVVL 147
            + L      + L   + + RD A           LE  L+    +S + +  +S  +V+
Sbjct: 223 TLTLWFEGAAEPLIYLVKVIRDPALDFQRRLDYGKLEKKLQTLFPNSKVYLIPMSYKIVV 282

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANS---------------------------- 179
            G  R  +++   + +    +     +                                 
Sbjct: 283 RGQARDAEEAAHILSIVRGEVINQEGSLGGPQPFLGGLGGDLGGGSSTIDNGAIGGIGNS 342

Query: 180 -------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
                  ++  ++N L + GE QV+L V IAE+ R  + + G   S+  + S   +S   
Sbjct: 343 FGGASDLAAGFIINELRVPGEFQVSLTVRIAELNRSEMFKAGADISVLFNGSQLIESSLT 402

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                    GG  ++ G+ D      +L  L+     + L EP LT +SG+ A F +GG+
Sbjct: 403 ---------GGAATLGGIFDNGDVSILLDWLKTNGIGKILVEPRLTVLSGRQARFLAGGE 453

Query: 293 HLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
               T+    GA   S T   +G  +  TPTVL    I L    E S+     +   +P 
Sbjct: 454 FAVPTIIGIAGAQGQSTTFRGFGTSVLVTPTVLDRDLIRLSTIAEYSDLNQANSVQGIPG 513

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETE 409
              R+ DTTVE+  G T+ LAGL    ++     IP L  IP +G ALF      ++E E
Sbjct: 514 TNARRIDTTVEMREGQTLALAGLYSHLMKTNISKIPFLGDIPKIGPALFSRKEKTQDENE 573

Query: 410 IFIAATPFLVKPVAMRDLSR-PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY-KG 467
           + I  TP +V+P+   ++   P    +   D + F++NR   I G  +    +   Y  G
Sbjct: 574 LLILITPDIVRPMDPEEVPPVPGFEVTYPGDHEFFWYNR---IEGTPDTGHYQVPPYGSG 630

Query: 468 AIG 470
           + G
Sbjct: 631 SNG 633


>gi|239814526|ref|YP_002943436.1| type II and III secretion system protein [Variovorax paradoxus
           S110]
 gi|239801103|gb|ACS18170.1| type II and III secretion system protein [Variovorax paradoxus
           S110]
          Length = 504

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 116/400 (29%), Positives = 196/400 (49%), Gaps = 29/400 (7%)

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-N 135
            DV + SP  ++  G+  G  NV+L   DG      D+++  D   L+  L   + +  +
Sbjct: 121 VDVTLLSPTDLFFRGRQAGSMNVVLQSVDGTC-YIKDVIVTIDPGALQSKLAELMPEENH 179

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           IRV     ++VL G +         + L+  +           +  KKV+NLL +    Q
Sbjct: 180 IRVRSAEKSIVLTGEISDALKLDDVMSLAMAY----------GADGKKVVNLLRVTAPQQ 229

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V L+V IAEV + +L ++G +  ++ +  G   S++      F+S GG       + R S
Sbjct: 230 VMLEVKIAEVSKTLLDRLGARVGLSRTGGGGRDSYS--LISSFLSGGGGLLEAIRIGRTS 287

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHD 311
               +   +    +R LAEP + AISGQ ASF SGG+       S+ G      ++   +
Sbjct: 288 VG--IDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQSAAGGGGTNITLEEKE 345

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTVELP 363
           +G+ + FTPTVL+ GR+ L++ +EVS+     +           +PS  VR+ADTTV+L 
Sbjct: 346 FGIGVKFTPTVLNGGRVNLKMISEVSDLSQTGSPFTTVTGVTAVLPSLTVRRADTTVQLN 405

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G + V+AGL+K ++ +  +  P L ++P++GALFR++ F  ++TE+    TP LV+P+A
Sbjct: 406 DGQSFVIAGLIKSNVTESIKRYPGLGEVPVMGALFRSTEFQNDQTELMFVITPRLVRPLA 465

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
                 P D++ V   A+ +    +        A   + Q
Sbjct: 466 -EAPRVPTDNHVVPSRAEVYLNGSLESATPAPVAPAGQPQ 504


>gi|296121060|ref|YP_003628838.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
 gi|296013400|gb|ADG66639.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
          Length = 622

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 109/467 (23%), Positives = 191/467 (40%), Gaps = 40/467 (8%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANA--AVINISDVEIGKGK-KISIGLNKVI 58
           R+     + +     F S P +     +  A    A +    V+I   + K+ I      
Sbjct: 9   RWRAALVWGLCLCQSFLSYPGLTSSSGMAFAQNGNAPVAGEVVQITASRTKLEIAERFAR 68

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++Q P  +  V   DP    V   +   + + G   G   +++   +G  +  +D+++  
Sbjct: 69  VVQFPRKILRVDGFDPAVLSVTALAHDQLRVQGITEGITTMVITDENG-AITTIDVMVAG 127

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L R   ++++ V  + D V+L G V   Q     V++++ +           
Sbjct: 128 DARLLQAVLSREYPNTSVTVTKLKDNVLLRGWVVEPQQITEIVDIAKLY----------- 176

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------- 229
                V+N + + G  QV L+  + EV+R  L+ +G   +  G +   S +         
Sbjct: 177 --YPNVLNQMKMGGPQQVQLRCKVMEVQRSKLRSLGLNFTYLGRNVAFSSTPGAISPLDA 234

Query: 230 FAADFGG-------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           F    GG       +        S+  V D F+F  +L AL     ++  AEPT+   SG
Sbjct: 235 FTVPIGGPPGVGLAQSGFRNATMSLGIVGDDFAFGGLLEALREEGLLKIQAEPTIVTRSG 294

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
           + A   SGG+     V    G  ++   ++GV L   P +LSP R+   I  EVSE    
Sbjct: 295 EPAKIVSGGEFPIP-VPQGLGTIAIEWREFGVRLESVPMILSPNRLKQTIIAEVSERDLT 353

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             + +N+  +P    R  +T VE+  G T+ + GL+          IP L ++P +GA F
Sbjct: 354 NAVTLNSTTVPGLTKRTVETQVEMNFGQTLAIGGLISSRKTAQTSKIPFLGELPYVGAAF 413

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAF 443
           R   ++  ETE+ +  TP  V  +    +    P    +V  D + F
Sbjct: 414 RRVNYDEAETELLVLITPEFVSAMDPAQVPDRLPGTASAVPTDRELF 460


>gi|221067360|ref|ZP_03543465.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
 gi|220712383|gb|EED67751.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
          Length = 520

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 125/432 (28%), Positives = 204/432 (47%), Gaps = 50/432 (11%)

Query: 51  SIGLNKVIILQVPVDVQDVLV-------------SDPTK--------ADVVVHSPRTMYL 89
           ++ L K +++ +   +  +LV               P           +V + SPR ++ 
Sbjct: 52  TVTLGKSVVIPLNSPMARILVSGQTPGAGQAAANGQPQMQVQNGMGDIEVQLLSPRDLFF 111

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLH 148
            G+  G  NVIL    G   +  D+++  D   L+  L   + +   IRV+   + +VL 
Sbjct: 112 RGRKSGSMNVILQNAQGACFIK-DVIVTMDPGPLQAKLSELMPEERSIRVQGADNALVLS 170

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G +         V L+  +           S SKK++NLL      QV L+V IAE+ + 
Sbjct: 171 GEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQVMLEVKIAEISKT 219

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
           +L ++G   S    +S    S+       F+S GG       L R S    +   +    
Sbjct: 220 LLDKLGSSLSGQRVTSNGQNSYT--VLSNFLSGGGGLLNAMRLGRGSIS--IDGQKDDGL 275

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSP 325
           +R LAEP + AISGQ ASF SGG+       ++T    V T    ++G+ + FTPTVL  
Sbjct: 276 VRILAEPNIMAISGQQASFLSGGKIFIPVAQTNTNGVPVMTLEEKEFGIGVKFTPTVLGN 335

Query: 326 GRIGLRIQTEVSE------PVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            R+ L++ +EVS+      P   +N     +PS  VR+ADTTV+L  G ++V+AGL+K++
Sbjct: 336 SRVNLKLVSEVSDLSQTGSPFTSINGVTSVIPSLTVRRADTTVQLNDGQSLVIAGLIKNN 395

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
           I +  +  P L +IP+LGAL R++ F  ++TE+    TP LV+ +A      P D++ V 
Sbjct: 396 ITEAIKRFPGLGEIPVLGALARSTEFQTDQTELMFVITPRLVQALA-EAPRVPTDNHVVP 454

Query: 438 DDAKAFFFNRVN 449
             A+ +    + 
Sbjct: 455 SRAEVYLNGALE 466


>gi|187923645|ref|YP_001895287.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
 gi|187714839|gb|ACD16063.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
          Length = 468

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 119/432 (27%), Positives = 188/432 (43%), Gaps = 37/432 (8%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           S+    A      +A  A            + I + +     + V   +Q V + DP+ A
Sbjct: 22  SAATDAAGPAQRAQAAPAAQPHQAAFAPPAQGIDLTVGAQRQIAVGHTLQRVAIGDPSVA 81

Query: 78  DVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
           DV++        + L GK  G  N++L   D    L   + +    A         +   
Sbjct: 82  DVLIIKGDKRGGVLLVGKAAGTTNLMLWSRDRDAPLQYTVNVTTPAAA------SLLGAD 135

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
              V+++  T ++ G   T++  QRAV  +E  L + G           V +   +A   
Sbjct: 136 TPAVKVLGGTAIVSGTSATMEAHQRAVVAAEGSLGKDGA----------VFDTSTVASRA 185

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            V + V + E  R +LK++GF           GS +  + S  +   G+  S  G   + 
Sbjct: 186 VVQVDVRVVEFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVSATAGQAPSLTGVTPIS 245

Query: 249 GVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
              +             L  LE     R LAEPTL A+SGQSASF +GG+     V  + 
Sbjct: 246 SAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSASFLAGGEVPIP-VPQAL 304

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADT 358
           G+TS+    YGV L  TPTVLSP RI L++  E S+      + ++   +P++  R+ADT
Sbjct: 305 GSTSIEFKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAFTTRRADT 364

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TVEL  G + V+ GL+  +       +PLL  +P++G  F+   + + E E+ I  TP L
Sbjct: 365 TVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLNYQQNEKELVIIVTPHL 424

Query: 419 VKPVAMRDLSRP 430
           V P+A R  + P
Sbjct: 425 VSPLA-RGATLP 435


>gi|296158794|ref|ZP_06841623.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
 gi|295890999|gb|EFG70788.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
          Length = 474

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 117/441 (26%), Positives = 190/441 (43%), Gaps = 36/441 (8%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
            +L      + +    +      +     +A  A            ++I++ +     L 
Sbjct: 12  AWLGVALLAVSAATDAAGPAPRGQAAQAAQAAQAAQAAQPALAAPAQRIALTVGAQQQLA 71

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           V   +Q V + DP+ ADV++        + L GK  G  N++L   D    L   + +  
Sbjct: 72  VGHTLQRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARDRDAPLQYTVDVTT 131

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
             A         +      V+++  T V+ G   T++  QRAV  +E  L + G      
Sbjct: 132 PAAA------SLLGPDTPAVKVLGGTAVVSGTSATMEAHQRAVVAAEGSLGKDGA----- 180

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAA 232
                V +   +A    V + V + E  R +LK++GF           GS +  + S  +
Sbjct: 181 -----VFDTSTVASRAVVQVDVRVVEFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVS 235

Query: 233 DFGGKFVSEGGDFSVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSAS 286
              G+  S  G   +    +             L  LE     R LAEPTL A+SGQSAS
Sbjct: 236 ATAGQAPSMTGVTPISSAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSAS 295

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIG 342
           F +GG+     V  + G+TS+    YG+ L  TPTVLSP RI L++  E S+      + 
Sbjct: 296 FLAGGEVPIP-VPQALGSTSIEFKPYGIGLTLTPTVLSPQRIALKVAPEASQLDFANAVT 354

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           ++   +P++  R+ADTTVEL  G + V+ GL+  +       +PLL  +P++G  F+   
Sbjct: 355 ISGVSVPAFITRRADTTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLN 414

Query: 403 FNREETEIFIAATPFLVKPVA 423
           + + E E+ I  TP LV P+A
Sbjct: 415 YQQNEKELVIIVTPHLVSPLA 435


>gi|91783011|ref|YP_558217.1| putative outer membrane channel signal peptide protein, CpaC like
           [Burkholderia xenovorans LB400]
 gi|91686965|gb|ABE30165.1| Putative outer membrane channel signal peptide protein, CpaC like
           protein [Burkholderia xenovorans LB400]
          Length = 454

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 119/467 (25%), Positives = 196/467 (41%), Gaps = 36/467 (7%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           M+++   +     A+     +A  A            ++I++ +     L V   +Q + 
Sbjct: 1   MLAVSAATDAAGPAQRGQAAQAAQAAQAAQPTLAAPAQRIALTVGAQQQLAVGHTLQRIA 60

Query: 71  VSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           + DP+ ADV++        + L GK  G  N++L   D    L   + +    A      
Sbjct: 61  IGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARDRDAPLQYTVDVTTPAAA----- 115

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
              +      V+++  T V+ G   T++  QRAV  +E  L + G           V + 
Sbjct: 116 -SLLGPDTPAVKVLGGTAVVSGTSATMEAHQRAVVAAEGSLGKDGA----------VFDT 164

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGGKFVSE 241
             +A    V + V + E  R +LK++GF           GS +  + S  +   G+  S 
Sbjct: 165 STVASRAVVQVDVRVVEFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVSATAGQAPSM 224

Query: 242 GGDFSVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
            G   +    +             L  LE     R LAEPTL A+SGQSASF +GG+   
Sbjct: 225 TGVTPISSAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSASFLAGGEVPI 284

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351
             V  + G TS+    YG+ L  TPTVLSP RI L++  E S+      + ++   +P++
Sbjct: 285 P-VPQALGTTSIEFKPYGIGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAF 343

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+ADTTVEL  G + V+ GL+  +       +PLL  +P++G  F+   + + E E+ 
Sbjct: 344 ITRRADTTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLNYQQNEKELV 403

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           I  TP LV P+A             E      + + +  +     A 
Sbjct: 404 IIVTPHLVSPLAKGATLPSTPGEQSEQRNGPVWRSLIGGVAARDSAP 450


>gi|206559894|ref|YP_002230658.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|198035935|emb|CAR51827.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 443

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 129/471 (27%), Positives = 200/471 (42%), Gaps = 51/471 (10%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           +   +   S   +PP+ +A      IS + IG  ++I+ G            +Q V V D
Sbjct: 5   LIGLAIALSALAMPPLSDAADTSGTIS-LAIGAQRQIATG----------RALQRVAVGD 53

Query: 74  PTKADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           P+ ADV+V       + L  KN G  NV++      +    ++ +    A      R  +
Sbjct: 54  PSVADVLVVKGGRGGVLLVAKNAGATNVMIWERGRDEPTVYNVNVTSGAA------RALL 107

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
             ++  V     T V+ G   T+   QRAV  ++T   + G            ++   I+
Sbjct: 108 DGTSPSVNTYGGTTVIGGAAGTLDGHQRAVHAAKTVGGKDGTT----------LDASTIS 157

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFGGKF-----V 239
           G++ V + V + E  R +LKQ G          S    +     S +   GG       V
Sbjct: 158 GKNVVQVDVRVVEFSRSVLKQAGLNFFKQSNGFSFGAFAPTGLTSISGTPGGSLTYNTSV 217

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                F++            L  LE     R LA+PTL A+SGQSA+F +GG+     V 
Sbjct: 218 PISSAFNLVVNSVSRGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VP 276

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRK 355
            S G  S+    YGV L  TPTVLSP RI L++  E S+      I +N+  +P+   R+
Sbjct: 277 QSLGTISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRR 336

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ADTTVEL  G + V+ GL+  +       +P L  +PI+GA F+N  + + + E+ I  T
Sbjct: 337 ADTTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVT 396

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           P LV P+A +    P    +   +        V + Y    AS   G  + 
Sbjct: 397 PHLVAPIA-QGAPLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442


>gi|78066131|ref|YP_368900.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
 gi|77966876|gb|ABB08256.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
          Length = 443

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 196/471 (41%), Gaps = 51/471 (10%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           +   +   S   +PP+  A      IS + +G  ++++ G            +Q V V D
Sbjct: 5   LIGLAIALSALAMPPLSGAADTSGTIS-LAVGAQRQLATG----------RALQRVAVGD 53

Query: 74  PTKADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           P+ ADV+V       + L  K+ G  NV++      +    ++ +    A      R  +
Sbjct: 54  PSVADVMVVKGGRGGVLLIAKSAGATNVMIWERGHDEPTVYNVSVTSGAA------RALL 107

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
                 V     T V+ G   ++   QRAV  ++T   + G            ++   I+
Sbjct: 108 DGGTSSVNTYGGTTVIGGASGSLDGHQRAVHAAKTVSGKDGTT----------IDASTIS 157

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFGGKF-----V 239
           G++ V + V + E  R +LKQ G          S    +     S     GG       V
Sbjct: 158 GKNVVQVDVRVVEFSRSVLKQAGLNFFKQSNGFSFGAFAPTGLTSITGSPGGALTYNTNV 217

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                F++            L  LE     R LA+PTL A+SGQSA+F +GG+     V 
Sbjct: 218 PISSAFNLVVNSVSHGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VP 276

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRK 355
            S G  S+    YGV L  TPTVL+P RI L++  E S+      I +N   +P+   R+
Sbjct: 277 QSLGTISIEWKPYGVGLTVTPTVLNPRRIALKVAPESSQLDFVHSITINGVQVPALTTRR 336

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ADTTVEL  G + V+ GL+  +       +P L  +PI+GA F+N  + + + E+ I  T
Sbjct: 337 ADTTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQSDKELVIIVT 396

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           P LV P+A +  S P    +   +        V + Y    AS   G  + 
Sbjct: 397 PHLVAPIA-QGASLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442


>gi|322419944|ref|YP_004199167.1| type II and III secretion system protein [Geobacter sp. M18]
 gi|320126331|gb|ADW13891.1| type II and III secretion system protein [Geobacter sp. M18]
          Length = 493

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 121/455 (26%), Positives = 186/455 (40%), Gaps = 44/455 (9%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV--L 70
            +   ++    AK   + E  A   +++      G  I +  +         D  +    
Sbjct: 52  VLVTLANTKKEAKERDVDETVAVPNSVATATATDGSTIVLPASVTRTRSSEADTGNTNKF 111

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDILIERDIAHLEMT 126
           V  P        S   + L G  +G  ++I+               D+ +  D   +E  
Sbjct: 112 VV-PEI-----LSEYVLKLDGTAIGSTSMIIWTKGEGDERPAPTFFDLKVTGDREAIENQ 165

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L+       I V+  SDTVVL G V   Q   +A E+++ F               KV+N
Sbjct: 166 LKEMAPKETIVVQYASDTVVLSGNVANDQTKTKAFEIAKAFA-------------PKVIN 212

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
            + +    QV L+V +A+V +  LK++G    I GS++    +  A   G  V+  G  +
Sbjct: 213 NMTVNVPQQVLLQVKVAQVDKSSLKKLGISFLIKGSTAEGFSNLVAGPDGA-VTGIGTGA 271

Query: 247 VKGVLDRFSFE--------------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
             G+ D  S +               VL AL      + LAEP L   S Q   F +G +
Sbjct: 272 ATGIGDFPSLDSFQAGVSYFPAGIGAVLSALSSKGLAKVLAEPNLLVRSSQEGYFLAGSK 331

Query: 293 HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGDMP 349
                + S+ G   TS+     G+ L F P VL  G I L+I   EVS     +     P
Sbjct: 332 IPIAILESTGGQATTSIRYEPVGIKLKFKPEVLENGMISLKINPAEVSSIQGFLPVNGYP 391

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R  +T+VEL  G +++LAGLL++D  +    IPLL  IPILGALFR+S  + +E E
Sbjct: 392 IIDTRTVETSVELKDGESLILAGLLQEDEIKNMSKIPLLGDIPILGALFRSSSSDIKEKE 451

Query: 410 IFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAF 443
           +    TP +V+P A    +  P D     +  K  
Sbjct: 452 LVFFITPKIVQPTAPGVKVEMPTDKKLTPEQEKEL 486


>gi|322434104|ref|YP_004216316.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321161831|gb|ADW67536.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 484

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 118/467 (25%), Positives = 202/467 (43%), Gaps = 46/467 (9%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
           SV        A+ A   +   ++G  + + + +   ++L    +++ + V +PT      
Sbjct: 34  SVQAPGDSPTAHEARKRMDMHDMGGDETLHLLVGHSMVLHSTSNIKRIFVGNPTVLQSYT 93

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
             P  + L  K  G +++++    G+  L   I  + D   L+ ++      S I V   
Sbjct: 94  GGPSEIVLTAKATGVSSLVVWDTQGQSCL-YTIAADMDPETLQRSMHDAYPKSQIDVGGH 152

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLK 199
              + L G V T + S  A +L+ ++             SK V+N + +      QV LK
Sbjct: 153 EGRIFLSGTVPTQEASDNAFKLASSY-------------SKDVVNSIRVVTIHGKQVQLK 199

Query: 200 VTIAEVRRDILKQIGFQ-------HSITGSSSGPSKSFAADFGGKFVSEGGD-----FSV 247
           + I EV R  ++Q G         +++ G ++G   S A    G   +          +V
Sbjct: 200 LRIVEVDRTKMEQFGINLFRPTASNAVGGLTTGQFPSLATYATGTPATATAPAVPATINV 259

Query: 248 KGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              L+ F           +  LE+   ++ LAEPTLTA+SGQSA F SGG+  +  V   
Sbjct: 260 NNPLNFFIYSFSHEIGATIQDLEQKQILQVLAEPTLTAMSGQSAKFLSGGEFPFPVVQGG 319

Query: 302 TGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRV 353
             A     +++   YGV + FTPTV   G I L++  EVS       + ++   +P+   
Sbjct: 320 GSAAGVAITISFRPYGVKVDFTPTVNEDGSIHLKVAPEVSTLDFSNAVTISGFTIPALST 379

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412
           R+A+T VE+ +G T  L GLL     +    IP +S++PILG LF     +     E+ +
Sbjct: 380 RRAETEVEILNGQTFALTGLLDHRTTESLSQIPGISRLPILGKLFATTKSYTHSVIELVV 439

Query: 413 AATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
             T  +V P     D ++PD   +V +  K+ F N ++K     +  
Sbjct: 440 LVTANVVDPLTQPTDTTQPD--MAVPNLDKSVFDNDLSKEQKLPKKP 484


>gi|116620532|ref|YP_822688.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223694|gb|ABJ82403.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 529

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 104/416 (25%), Positives = 188/416 (45%), Gaps = 34/416 (8%)

Query: 40  SDVEIGKGK-KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            DV+   G  K+ + + K +I+  P+++Q + V++    + V  +P+ + + GK  G+  
Sbjct: 52  QDVQPAPGPGKLMVTVGKSLIIDSPMNIQRISVANGELIEAVAVNPKEVLINGKAAGETT 111

Query: 99  VILIGHDG-KQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
           +I+    G + + +L + I    +  +   L R   D  I V   ++   + G V+ +  
Sbjct: 112 LIIWQQGGNRLLYDLTVRISPVRLDVVRQQLARDFPDDEINVTYDNEVAFVRGRVKDLSA 171

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTIAEVRRDILKQI 213
           + R + ++              +S  K +NLL +     E Q+ L V  A V R     +
Sbjct: 172 ADRVMAIA--------------ASLGKTVNLLRVDVPPVETQILLHVRFANVDRGASTDL 217

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD------RFSFETVLHALERAT 267
           G   + TG+ +  +      +    V   G  S+   L+        +    + ALE   
Sbjct: 218 GVSLA-TGAFNQSTAITTGQYPPPTVGTDGRVSISDALNILLFRKDINLGATIKALESKR 276

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSP 325
            + TLAEP + AI+G+ A+F +GG+     V      GA S+T  ++G+ ++F P +   
Sbjct: 277 MLETLAEPNVMAINGKPAAFIAGGEFPVPMVQGGGLAGAVSITFREFGIRINFLPKITPR 336

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           G I L +  EVS       +      +P+   R+  T VEL +G + V+AGLL +   + 
Sbjct: 337 GTIQLAVAPEVSSLDYSNAVTFQGYTIPALATRRIQTEVELETGQSFVIAGLLDNRTTET 396

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
              IP LS IP+LG LF++    +  TE+ +  TP +V+P+       P  + +V 
Sbjct: 397 LNKIPGLSNIPLLGKLFQSRAVAKNNTELMVIVTPEIVRPIQAGQ-PLPSLNMTVP 451


>gi|53719509|ref|YP_108495.1| putative exported fimbriae assembly protein [Burkholderia
           pseudomallei K96243]
 gi|76808601|ref|YP_333341.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710b]
 gi|121598954|ref|YP_993098.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|124383520|ref|YP_001026125.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|126440403|ref|YP_001058807.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|134282202|ref|ZP_01768907.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|167002482|ref|ZP_02268272.1| type II/III secretion system protein [Burkholderia mallei PRL-20]
 gi|167719788|ref|ZP_02403024.1| type II/III secretion system protein [Burkholderia pseudomallei
           DM98]
 gi|167738786|ref|ZP_02411560.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
 gi|167816009|ref|ZP_02447689.1| type II/III secretion system protein [Burkholderia pseudomallei 91]
 gi|167845916|ref|ZP_02471424.1| type II/III secretion system protein [Burkholderia pseudomallei
           B7210]
 gi|167894492|ref|ZP_02481894.1| type II/III secretion system protein [Burkholderia pseudomallei
           7894]
 gi|167902899|ref|ZP_02490104.1| type II/III secretion system protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|237812067|ref|YP_002896518.1| bacterial type II/III secretion system protein [Burkholderia
           pseudomallei MSHR346]
 gi|238562618|ref|ZP_00440075.2| bacterial type II/III secretion system protein [Burkholderia mallei
           GB8 horse 4]
 gi|242315526|ref|ZP_04814542.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|254177827|ref|ZP_04884482.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|254179957|ref|ZP_04886556.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|254188633|ref|ZP_04895144.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254198005|ref|ZP_04904427.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|254260610|ref|ZP_04951664.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
 gi|254358355|ref|ZP_04974628.1| type II/III secretion system protein [Burkholderia mallei
           2002721280]
 gi|52209923|emb|CAH35895.1| putative exported fimbriae assembly protein [Burkholderia
           pseudomallei K96243]
 gi|76578054|gb|ABA47529.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710b]
 gi|121227764|gb|ABM50282.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|124291540|gb|ABN00809.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|126219896|gb|ABN83402.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|134246240|gb|EBA46329.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|148027482|gb|EDK85503.1| type II/III secretion system protein [Burkholderia mallei
           2002721280]
 gi|157936312|gb|EDO91982.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698866|gb|EDP88836.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|169654746|gb|EDS87439.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|184210497|gb|EDU07540.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|237503987|gb|ACQ96305.1| bacterial type II/III secretion system protein [Burkholderia
           pseudomallei MSHR346]
 gi|238522203|gb|EEP85649.1| bacterial type II/III secretion system protein [Burkholderia mallei
           GB8 horse 4]
 gi|242138765|gb|EES25167.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|243061822|gb|EES44008.1| type II/III secretion system protein [Burkholderia mallei PRL-20]
 gi|254219299|gb|EET08683.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
          Length = 441

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 191/454 (42%), Gaps = 50/454 (11%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MY 88
            A AA     ++  G  ++I++G            VQ V ++DP  ADV+V       + 
Sbjct: 19  AARAAETGTIELAAGTQRQIAVGHG----------VQRVAIADPNVADVLVIKGGRGGVL 68

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           L  K  G  ++++      +     + +    A      R  +   +  V+  + T V+ 
Sbjct: 69  LVAKAAGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVA 122

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G   T+    RA+ + +    + G           V+++  + G++ V + V + E  R 
Sbjct: 123 GSAATLDAHARALAVGKGMAGKDG----------GVLDVSTVGGKNVVQVDVRVVEFSRS 172

Query: 209 ILKQIGFQH-----SITGSSSGPSKSFAADFGGKF-------VSEGGDFSVKGVLDRFSF 256
           +LKQ G          T  S  P+   +   GG         +     F++         
Sbjct: 173 VLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGL 232

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
              L  LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L
Sbjct: 233 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 291

Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
             TPTVLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G +  + G
Sbjct: 292 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGG 351

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L+  +     + +P L  +PI+G  F++  + + + E+ I  TP LV P+A ++ S P  
Sbjct: 352 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 408

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
             +   +        V + Y     S   G  + 
Sbjct: 409 --ATPGELSEQRDGPVWRSYLGGVLSPDAGPGFS 440


>gi|299532592|ref|ZP_07045981.1| type II and III secretion system protein [Comamonas testosteroni
           S44]
 gi|298719395|gb|EFI60363.1| type II and III secretion system protein [Comamonas testosteroni
           S44]
          Length = 520

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 123/445 (27%), Positives = 204/445 (45%), Gaps = 50/445 (11%)

Query: 51  SIGLNKVIILQVPVDVQDVLVS--DPTK-------------------ADVVVHSPRTMYL 89
           ++ L K +++ +   +  +LVS   P                      +V + SPR ++ 
Sbjct: 50  TVTLGKSVVIPLNSPMARILVSGQTPGVGQAAANGQPQMQVQNGMGDIEVQLLSPRDLFF 109

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLH 148
            G+  G  NVIL    G   +  D+++  D   L+  L   + +   IRV+   + +VL 
Sbjct: 110 RGRKSGSMNVILQNAQGACFIK-DVIVTMDPGPLQTKLSELMPEERGIRVQGADNALVLS 168

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G +         V L+  +           S SKK++NLL      QV L+V IAEV + 
Sbjct: 169 GEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQVMLEVKIAEVSKT 217

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
           +L ++G   +    +S    +F+      F+S GG       + + S    +   +    
Sbjct: 218 LLDKLGASLAGQRITSNGMNTFS--IASNFLSGGGGLLSAMRIGKGSIS--IDGQKDDGL 273

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSP 325
           +R LAEP + AISGQ ASF SGG+       S+T    V T    ++G+ + FTPTVL  
Sbjct: 274 VRILAEPNIMAISGQQASFLSGGKIFIPVSQSNTNGVPVMTLEEKEFGIGVKFTPTVLGS 333

Query: 326 GRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            R+ L++ +EVS+     +           +PS  VR+ADTTV+L  G ++V+AGL+K++
Sbjct: 334 SRVNLKLVSEVSDLSQTGSPFTAINGVTSVIPSLSVRRADTTVQLNDGQSLVIAGLIKNN 393

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
           I +  +  P L +IP+LGAL R++ F  ++TE+    TP LV+ +A      P D++   
Sbjct: 394 ITEAVKRFPGLGEIPVLGALARSTEFQTDQTELMFIITPRLVQALA-EAPRVPTDNHVPP 452

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEG 462
             A+ +    +           V  
Sbjct: 453 SRAEVYLNGALESSKPASAVKTVPA 477


>gi|107022594|ref|YP_620921.1| type II and III secretion system protein [Burkholderia cenocepacia
           AU 1054]
 gi|116689543|ref|YP_835166.1| type II and III secretion system protein [Burkholderia cenocepacia
           HI2424]
 gi|170732847|ref|YP_001764794.1| type II and III secretion system protein [Burkholderia cenocepacia
           MC0-3]
 gi|105892783|gb|ABF75948.1| type II and III secretion system protein [Burkholderia cenocepacia
           AU 1054]
 gi|116647632|gb|ABK08273.1| type II and III secretion system protein [Burkholderia cenocepacia
           HI2424]
 gi|169816089|gb|ACA90672.1| type II and III secretion system protein [Burkholderia cenocepacia
           MC0-3]
          Length = 443

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 199/471 (42%), Gaps = 51/471 (10%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           +   +   S   +PP+ +A      IS + IG  ++I+ G            +Q V V D
Sbjct: 5   LIGLAIALSALAMPPLSDAADTSGTIS-LAIGAQRQIATG----------RALQRVAVGD 53

Query: 74  PTKADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           P+ ADV+V       + L  KN G  NV++      +    ++ +    A      R  +
Sbjct: 54  PSVADVLVVKGGRGGVLLVAKNAGATNVMIWERGRDEPTVYNVNVTSGAA------RALL 107

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
             ++  V     T V+ G   T+   QRAV  ++T   + G            ++   I+
Sbjct: 108 DGTSPSVNTYGGTTVIGGAAGTLDGHQRAVHAAKTVGGKDGTT----------LDASTIS 157

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFGGKF-----V 239
           G++ V + V + E  R +LKQ G          +    +     S     GG       V
Sbjct: 158 GKNVVQVDVRVVEFSRSVLKQAGLNFFKQSNGFAFGAFAPTGLTSITGTPGGSLTYNTSV 217

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                F++            L  LE     R LA+PTL A+SGQSA+F +GG+     V 
Sbjct: 218 PISSAFNLVVNSVSRGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VP 276

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRK 355
            S G  S+    YGV L  TPTVLSP RI L++  E S+      I +N+  +P+   R+
Sbjct: 277 QSLGTISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRR 336

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ADTTVEL  G + V+ GL+  +       +P L  +PI+GA F+N  + + + E+ I  T
Sbjct: 337 ADTTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVT 396

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           P LV P+A +    P    +   +        V + Y    AS   G  + 
Sbjct: 397 PHLVAPIA-QGAPLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442


>gi|167911136|ref|ZP_02498227.1| type II/III secretion system protein [Burkholderia pseudomallei
           112]
          Length = 432

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 192/454 (42%), Gaps = 50/454 (11%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MY 88
            A AA     ++  G  ++I++G            VQ V ++DP  ADV+V       + 
Sbjct: 10  AARAAETGTIELAAGTQRQIAVGHG----------VQRVAIADPNVADVLVIKGGRGGVL 59

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           L  K  G  ++++      +     + +    A      R  +   +  V+  + T V+ 
Sbjct: 60  LVAKAAGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVA 113

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G   T+    RA+ + +    + G           V+++  + G++ V + V + E  R 
Sbjct: 114 GSAATLDAHARALAVGKGMAGKDG----------GVLDVSTVGGKNVVQVDVRVVEFSRS 163

Query: 209 ILKQIGFQH-----SITGSSSGPSKSFAADFGGKF-------VSEGGDFSVKGVLDRFSF 256
           +LKQ G          T  S  P+   +   GG         +     F++         
Sbjct: 164 VLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGL 223

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
              L  LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L
Sbjct: 224 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 282

Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
             TPTVLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ G
Sbjct: 283 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGG 342

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L+  +     + +P L  +PI+G  F++  + + + E+ I  TP LV P+A ++ S P  
Sbjct: 343 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 399

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
             +   +        V + Y     S   G  + 
Sbjct: 400 --ATPGELSEQRDGPVWRSYLGGVLSPDAGPGFS 431


>gi|167587316|ref|ZP_02379704.1| type II and III secretion system protein [Burkholderia ubonensis
           Bu]
          Length = 477

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 109/460 (23%), Positives = 184/460 (40%), Gaps = 54/460 (11%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHD 105
            I + +     +     +Q V V DP+ ADV++        + L  K  G  NV+L    
Sbjct: 29  SIDLAVGSQRQIAAGRALQRVAVGDPSVADVLIMKGSRAGAVLLVAKAPGSTNVMLWERG 88

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
             + +  ++ +      ++      +  S    +   D  VL G   ++   +RA  + +
Sbjct: 89  RDEPMVWNVNV------VDAAAHAVLDSSTPDAKAYGDVAVLSGSAASLDAHERAAAIGQ 142

Query: 166 TFL-----------------------SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
                                       +            V++   + G + V + V +
Sbjct: 143 HMADKGGAAAGGNWGAGDAGATGKRGGGASGTLGKAGKGGAVIDASTVGGRNTVQVDVRV 202

Query: 203 AEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGV 250
            E  R +LK+ G          +    ++G  +S        F +  G      F++   
Sbjct: 203 VEFSRSVLKEAGLNFFKQSNGFAFGAFTAGGLQSITGAATSAFQATAGIPVASAFNLVAN 262

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    L  LE     R LA+PTL A+SGQSASF +GG+     V  + G+T++   
Sbjct: 263 SAGRGIFANLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIQWK 321

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGG 366
            YGV L  TPTVLSP RI L++  E S+      + +N+  +P+   R+ADTTVEL  G 
Sbjct: 322 QYGVGLTLTPTVLSPRRIALKVAPESSQLDFLHGVTINSVAVPAITTRRADTTVELGDGE 381

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + V+ GL+  +       +P+L  +PI+GA F+   + + + E+ I  TP LV P+A + 
Sbjct: 382 SFVIGGLIDRETMSNVNKVPVLGDLPIIGAFFKTLNYQQNDKELVIIVTPHLVAPIA-KG 440

Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            S P    +   +        V + Y    AS      + 
Sbjct: 441 ASLP----ATPGELSEQRDGPVWRSYLGGIASPDAAPGFS 476


>gi|53723520|ref|YP_102954.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|126448299|ref|YP_001080603.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|126452556|ref|YP_001066058.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|167824385|ref|ZP_02455856.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
 gi|217423417|ref|ZP_03454918.1| type II/III secretion system protein [Burkholderia pseudomallei
           576]
 gi|226199666|ref|ZP_03795219.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|254199896|ref|ZP_04906262.1| type II/III secretion system protein [Burkholderia mallei FMH]
 gi|254206228|ref|ZP_04912580.1| type II/III secretion system protein [Burkholderia mallei JHU]
 gi|254297793|ref|ZP_04965246.1| type II/III secretion system protein [Burkholderia pseudomallei
           406e]
 gi|52426943|gb|AAU47536.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|126226198|gb|ABN89738.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|126241169|gb|ABO04262.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|147749492|gb|EDK56566.1| type II/III secretion system protein [Burkholderia mallei FMH]
 gi|147753671|gb|EDK60736.1| type II/III secretion system protein [Burkholderia mallei JHU]
 gi|157807445|gb|EDO84615.1| type II/III secretion system protein [Burkholderia pseudomallei
           406e]
 gi|217393275|gb|EEC33296.1| type II/III secretion system protein [Burkholderia pseudomallei
           576]
 gi|225928252|gb|EEH24286.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
          Length = 432

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 191/454 (42%), Gaps = 50/454 (11%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MY 88
            A AA     ++  G  ++I++G            VQ V ++DP  ADV+V       + 
Sbjct: 10  AARAAETGTIELAAGTQRQIAVGHG----------VQRVAIADPNVADVLVIKGGRGGVL 59

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           L  K  G  ++++      +     + +    A      R  +   +  V+  + T V+ 
Sbjct: 60  LVAKAAGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVA 113

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G   T+    RA+ + +    + G           V+++  + G++ V + V + E  R 
Sbjct: 114 GSAATLDAHARALAVGKGMAGKDG----------GVLDVSTVGGKNVVQVDVRVVEFSRS 163

Query: 209 ILKQIGFQH-----SITGSSSGPSKSFAADFGGKF-------VSEGGDFSVKGVLDRFSF 256
           +LKQ G          T  S  P+   +   GG         +     F++         
Sbjct: 164 VLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGL 223

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
              L  LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L
Sbjct: 224 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 282

Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
             TPTVLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G +  + G
Sbjct: 283 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGG 342

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L+  +     + +P L  +PI+G  F++  + + + E+ I  TP LV P+A ++ S P  
Sbjct: 343 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 399

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
             +   +        V + Y     S   G  + 
Sbjct: 400 --ATPGELSEQRDGPVWRSYLGGVLSPDAGPGFS 431


>gi|325518465|gb|EGC98164.1| pilus assembly protein [Burkholderia sp. TJI49]
          Length = 429

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 115/445 (25%), Positives = 184/445 (41%), Gaps = 45/445 (10%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVI 100
                 I + +     +     +Q V V DP  ADV++       ++ L  K  G  NV+
Sbjct: 7   ASASGTIELAVGTQRQISAGRSLQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGATNVM 66

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L      +     + +      ++      + DS  RV     T VL G   ++   +RA
Sbjct: 67  LWERGRDEPTVWSVEV------VDAAAHAVLDDSTPRVNAYGGTAVLRGTSASLDAHERA 120

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217
           V + +    +             V++   +AG++ V + V + E  R +LKQ+GF     
Sbjct: 121 VAVGKNMAGKGA-----------VIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQ 169

Query: 218 ----SITGSSSGPSKSFAADFGGKF--------VSEGGDFSVKGVLDRFSFETVLHALER 265
               S    S G  +S+    G                 F++            L  LE 
Sbjct: 170 SNGFSFGSFSPGGVQSYGGGSGPGTAGYIPTLGSPVASAFNLVVNAAGHGIFGDLSLLEA 229

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R LAEPTL A+SGQSASF +GG+  + +     G+T++    YG+ L  TPTVLSP
Sbjct: 230 NNLARVLAEPTLVALSGQSASFLAGGEIPFPS-PQGLGSTAIQWKQYGIGLSLTPTVLSP 288

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+       
Sbjct: 289 QRIALKVAPESSQLDYVNSVTISGVSVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 348

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A +  + P    +   +  
Sbjct: 349 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIA-KGAALP----ATPGELS 403

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
                 V + Y    AS      + 
Sbjct: 404 EQRDGPVWRSYLGGVASPDAAPGFS 428


>gi|167919159|ref|ZP_02506250.1| type II/III secretion system protein [Burkholderia pseudomallei
           BCC215]
          Length = 432

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 191/454 (42%), Gaps = 50/454 (11%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MY 88
            A AA     ++  G  ++I++G            VQ V ++DP  ADV+V       + 
Sbjct: 10  AARAAETGAIELAAGTQRQIAVGHG----------VQRVAIADPNVADVLVIKGGRGGVL 59

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           L  K  G  ++++      +     + +    A      R  +   +  V+  + T V+ 
Sbjct: 60  LVAKAAGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVA 113

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G   T+    RA+ + +    + G           V+++  + G++ V + V + E  R 
Sbjct: 114 GSAATLDAHARALAVGKGMAGKDG----------GVLDVSTVGGKNVVQVDVRVVEFSRS 163

Query: 209 ILKQIGFQH-----SITGSSSGPSKSFAADFGGKF-------VSEGGDFSVKGVLDRFSF 256
           +LKQ G          T  S  P+   +   GG         +     F++         
Sbjct: 164 VLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGL 223

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
              L  LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L
Sbjct: 224 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 282

Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
             TPTVLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G +  + G
Sbjct: 283 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGG 342

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L+  +     + +P L  +PI+G  F++  + + + E+ I  TP LV P+A ++ S P  
Sbjct: 343 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 399

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
             +   +        V + Y     S   G  + 
Sbjct: 400 --ATPGELSEQRDGPVWRSYLGGVLSPDAGPGFS 431


>gi|264678238|ref|YP_003278145.1| type II and III secretion system protein [Comamonas testosteroni
           CNB-2]
 gi|262208751|gb|ACY32849.1| type II and III secretion system protein [Comamonas testosteroni
           CNB-2]
          Length = 523

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 124/442 (28%), Positives = 205/442 (46%), Gaps = 52/442 (11%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK-----------------------ADV 79
            I      ++ L K +++ +   +  +LVS  T                         +V
Sbjct: 43  AIRTEDPTTVTLGKSVVIPLSSPMARILVSGQTPGAGQAAAPMAANAQPQMQNGMGDIEV 102

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRV 138
            + SPR ++  G+  G  NVIL    G   +  D+++  D   L+  L   + +   IRV
Sbjct: 103 QLLSPRDLFFRGRKSGSMNVILQNAQGACFIK-DVIVTMDPGPLQAKLSELMPEERSIRV 161

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           +   + +VL G +         V L+  +           S SKK++NLL      QV L
Sbjct: 162 QGADNALVLSGEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQVML 210

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           +V IAEV + +L ++G   +    +S    +F+      F+S GG       + + S   
Sbjct: 211 EVKIAEVSKTLLDKLGASLAGQRITSNGMNTFS--IASNFLSGGGGLLSAMRIGKGSIS- 267

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVV 315
            +   +    +R LAEP + AISGQ ASF SGG+       S+T    V T    ++G+ 
Sbjct: 268 -IDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQSNTTGVPVMTLEEKEFGIG 326

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTVELPSGGT 367
           + FTPTVL   R+ L++ +EVS+     +           +PS  VR+ADTTV+L  G +
Sbjct: 327 VKFTPTVLGGSRVNLKLVSEVSDLSQTGSPFTAINGVTSVIPSLSVRRADTTVQLNDGQS 386

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +V+AGL+K++I +  +  P L +IP+LGAL R++ F  ++TE+    TP LV+ +A    
Sbjct: 387 LVIAGLIKNNITEAVKRFPGLGEIPVLGALARSTEFQTDQTELMFIITPRLVQALA-EAP 445

Query: 428 SRPDDHYSVEDDAKAFFFNRVN 449
             P D++ V   A+ +    + 
Sbjct: 446 RVPTDNHVVPSRAEVYLNGALE 467


>gi|161524905|ref|YP_001579917.1| type II and III secretion system protein [Burkholderia multivorans
           ATCC 17616]
 gi|189350345|ref|YP_001945973.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
 gi|160342334|gb|ABX15420.1| type II and III secretion system protein [Burkholderia multivorans
           ATCC 17616]
 gi|189334367|dbj|BAG43437.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
          Length = 443

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 115/445 (25%), Positives = 179/445 (40%), Gaps = 45/445 (10%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVI 100
                 I + +     +     +Q V V DP  ADV++       ++ L  K  G  NV+
Sbjct: 21  ASASGTIELAVGAQRQISAGRPLQRVAVGDPAIADVLIMKGSRSSSVLLIAKAPGATNVM 80

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L      +     + +      ++      + DS  RV     T VL G   ++   +RA
Sbjct: 81  LWERGRDEPTVWSVEV------VDAAAHAVLDDSAPRVNAYGGTAVLRGTSASLDAHERA 134

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--S 218
           V + +    +             V++   +AG+  V + V + E  R +LKQ+GF     
Sbjct: 135 VAVGKNMAGKGA-----------VIDRSTLAGKSVVQVDVRVVEFSRSVLKQVGFNFFKQ 183

Query: 219 ITGSSSGPSKSFAADFGGKFVSE-------------GGDFSVKGVLDRFSFETVLHALER 265
             G S G          G                     F++            L  LE 
Sbjct: 184 SNGFSFGSFLPSGVQSFGGGSGPGSAGYIPTLGSPVASAFNLVVNAAGRGIFGDLSLLEA 243

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R LAEPTL A+SGQSASF +GG+    +     G+T++    YGV L  TPTVLSP
Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLSP 302

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+       
Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A +  + P    +   +  
Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIA-KGAALP----ATPGELS 417

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
                 V + Y    AS      + 
Sbjct: 418 EQRDGPVWRSYLGGVASPDAAPGFS 442


>gi|293606490|ref|ZP_06688848.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292815113|gb|EFF74236.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 458

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 121/480 (25%), Positives = 205/480 (42%), Gaps = 43/480 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M+  QRT    M   L ++      +  + +  A   N +  +I     +++   + ++L
Sbjct: 1   MKRYQRTT---MICVLSAAVAMTYGVVSLAQTTAPGANAAARDIA----VAVKGQQSLML 53

Query: 61  QVPVDVQDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
                   + + DP  ADV +         ++ L+GK  G   + +   +       ++ 
Sbjct: 54  DGAAP-SRIAIGDPEVADVKILPASGKRAGSLLLYGKKAGTTQLQIWTGNNPTPQIWNVR 112

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           +      ++  L          V++  D  VL G   T      A + +   +       
Sbjct: 113 VA---GSVQAALASRGIQGGPNVDIAGDKAVLSGNAETPLAQIAAAQAAAAAVGD----- 164

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSFAADF 234
                 K V+++        V ++V + EV R ++KQ G   +   G  +G S +  +  
Sbjct: 165 ------KNVVDVSTAGAGGVVQVEVKVVEVSRSVMKQAGINFAASNGPWAGTSATAPSGL 218

Query: 235 GGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G       G     G     D  +F   L  L+     R LAEPTL A++GQSASF +GG
Sbjct: 219 GAPLGFTPGGIIASGFSLFYDSNNFSARLRLLQSNGMARVLAEPTLVALTGQSASFLAGG 278

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIG 342
           +          G T+VT   +G+ L  TPTVLS  RI L++  E SE             
Sbjct: 279 ELPIPEA-GGLGTTTVTFKPFGIGLTVTPTVLSRDRISLKVAPEASELDYSNGIAINTSA 337

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             +  +P+ R R+ADTTVEL  G + V++GL+    + +   +P+L  +PI+GA FR+  
Sbjct: 338 DTSTIIPALRTRRADTTVELGDGESFVISGLVSRQTKAMVNKVPMLGDLPIIGAFFRSVD 397

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           +++E+TE+ I  TP LV+P+A R ++ P      E  A + F      + GP    ++ G
Sbjct: 398 YSQEDTELVIVVTPRLVRPIA-RGVTLPLPGGRQE-AADSTFNAWGYYLMGPVGGQQMPG 455


>gi|21673269|ref|NP_661334.1| type II secretion system protein [Chlorobium tepidum TLS]
 gi|21646357|gb|AAM71676.1| type II secretion system protein [Chlorobium tepidum TLS]
          Length = 445

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 125/443 (28%), Positives = 201/443 (45%), Gaps = 56/443 (12%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           S+   +  + ++ V  + V V DP  AD ++ SP  +YL GK  G  N+I+ G +G    
Sbjct: 12  SVPEGESRVYRLAVPAKRVAVGDPAIADFIMISPSELYLSGKKTGATNLIVWGKNGN-FT 70

Query: 111 NLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
              +++ R++  ++  LR  +   + I++    D +VL G V     ++ A+ L +TFL 
Sbjct: 71  TAPLVVSRNVKPIQDLLRAVLPKEHDIQLYSSGDALVLAGSVSNALAAETAIRLVKTFLG 130

Query: 170 QSGRN---------------------------------------QYANSSSKKVMNLLNI 190
            +  +                                         A+S     +NLL I
Sbjct: 131 GTVPDVTPEATLTKKSEAATGTSGGTSISGMTGVASAAGMSGAATVASSGIHGFINLLKI 190

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               QV L+V IAEV +  ++ +GF       + G   +  +     FVS         +
Sbjct: 191 RDPQQVRLEVRIAEVSKSYMEALGFSW-----TQGVGSTAGSSLMTGFVSNA----TLNL 241

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           L + S    + A  +   I+ LAEPT+ A+SGQ   F  GG+    T +   GA      
Sbjct: 242 LLKNSGNLKVEADSQKNWIKMLAEPTIVAMSGQEGYFLVGGKIYTPTPTG-NGAVDYQER 300

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTVELPSGG 366
            YGV L FTPTVL  GRI L++  EVSEP     +     ++P+++V  A TTVE+  G 
Sbjct: 301 TYGVGLRFTPTVLDAGRISLKVAPEVSEPDSQFQSAGSLYNLPAFKVSAASTTVEMNEGQ 360

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +V+ GLLKD + +  E +PLL ++P+LGALFR++  + E+ E+ +   P LVK      
Sbjct: 361 NLVIGGLLKDKLTETIEAVPLLGQLPLLGALFRHTSMDSEKVEVIVIVRPTLVKASDT-V 419

Query: 427 LSRPDDHYSVEDDAKAFFFNRVN 449
              P D +      + F   ++ 
Sbjct: 420 PELPTDRFVPPGPNRLFLEGKLQ 442


>gi|187926427|ref|YP_001892772.1| type II and III secretion system protein [Ralstonia pickettii 12J]
 gi|241665914|ref|YP_002984273.1| type II and III secretion system protein [Ralstonia pickettii 12D]
 gi|187728181|gb|ACD29345.1| type II and III secretion system protein [Ralstonia pickettii 12J]
 gi|240867941|gb|ACS65601.1| type II and III secretion system protein [Ralstonia pickettii 12D]
          Length = 454

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/418 (23%), Positives = 178/418 (42%), Gaps = 38/418 (9%)

Query: 26  LPPIKEANAAVINISDVEIG-KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
           +  +    AA ++ +  E    G+ + +       +++   ++ + + +P  AD ++   
Sbjct: 11  MGGLALGCAAFVSSAFAETAPTGQTLHLLTGSQREIRLGKPLERIAIGNPEIADALLLKG 70

Query: 85  R----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
           R    ++ +  K  G ANV++    G      ++ ++             +      V  
Sbjct: 71  RGTATSVLIIAKKPGAANVMVWTQGG-VATTYNVQVDA---------AAPVPGDPA-VVA 119

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
             DT V+ G  +          L+    S +  +         V++  ++     V + V
Sbjct: 120 QGDTAVVSGQPKD------VYALARARRSAAAASGAEKPKDGNVIDTTSMNVPGTVQVDV 173

Query: 201 TIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSE------GGDFSVKG 249
            + E  + +LK+ GF            +  PS      FG   +S       G  F++  
Sbjct: 174 RVVEFSKTVLKEAGFTFGRTRGGFDFRTFAPSSLSKVTFGSNGLSTESTMPIGSAFNLLV 233

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                     L  LE     R LAEP+L A+SGQSA+F +GG+     V  + G T++  
Sbjct: 234 SSVSKGLFADLSLLESNGMARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEY 292

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSG 365
             +G+ L  +PT+LS  RI L++  E S+      + +N   +P+   R+ADTTVEL  G
Sbjct: 293 KPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADTTVELGDG 352

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            + V+ GL+        + +P L  +PI+G  F+   +N+EE E+ I  TP LVKP+A
Sbjct: 353 ESFVIGGLVSRSTLSNVDKVPFLGDVPIIGTFFKRLNYNQEERELVIIVTPHLVKPMA 410


>gi|309778769|ref|ZP_07673542.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308922477|gb|EFP68101.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 454

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 99/418 (23%), Positives = 178/418 (42%), Gaps = 38/418 (9%)

Query: 26  LPPIKEANAAVINISDVEIG-KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
           +  +    AA ++ +  E    G+ + +       +++   ++ + + +P  AD ++   
Sbjct: 11  MGGLALGCAAFVSSAFAETAPTGQTLHLLTGSQREIRLGKPLERIAIGNPEIADALLLKG 70

Query: 85  R----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
           R    ++ +  K  G ANV++    G      ++ ++             +      V  
Sbjct: 71  RGTATSVLIIAKKPGAANVMVWTQGG-VATTYNVQVDA---------AAPVPGDPA-VVA 119

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
             DT V+ G  +          L+    S +  +         V++  ++     V + V
Sbjct: 120 QGDTAVVSGQPKD------VYALARARRSAAAASGAEKPKDGNVIDTTSMNVPGTVQVDV 173

Query: 201 TIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSE------GGDFSVKG 249
            + E  + +LK+ GF            +  PS      FG   +S       G  F++  
Sbjct: 174 RVVEFSKTVLKEAGFTFGRTRGGFDFRTFAPSSLSKVTFGSNGLSTESTMPIGSAFNLLV 233

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                     L  LE     R LAEP+L A+SGQSA+F +GG+     V  + G T++  
Sbjct: 234 SSVSKGLFADLSLLESNGMARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEY 292

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSG 365
             +G+ L  +PT+LS  RI L++  E S+      + +N   +P+   R+ADTTVEL  G
Sbjct: 293 KPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADTTVELGDG 352

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            + V+ GL+        + +P L  +P++G  F+   +N+EE E+ I  TP LVKP+A
Sbjct: 353 ESFVIGGLVSRSTLSNVDKVPFLGDVPVIGTFFKRLNYNQEERELVIIVTPHLVKPMA 410


>gi|307944371|ref|ZP_07659712.1| putative type III secretion component [Roseibium sp. TrichSKD4]
 gi|307772717|gb|EFO31937.1| putative type III secretion component [Roseibium sp. TrichSKD4]
          Length = 411

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 99/394 (25%), Positives = 170/394 (43%), Gaps = 18/394 (4%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
               I++     I+L+    V  V +     A+V   + + +Y+ G   G  N++++ +D
Sbjct: 19  AAPPINLTKGFGILLRFNEPVASVFIGSNEIAEVQAVNEKAIYVSGLTAGTTNLLVMNYD 78

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
              + +  I++          L   I + ++ V+   +T ++ G V  I D+    E+  
Sbjct: 79  NDIIRSHAIVVHPVNNETSYLLENLIPNGDVTVQSSGNTSIIRGNVDNIDDADDIREVKT 138

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
               Q           +KV++    +   QV+LKV I E+ R  L ++GF  S   S S 
Sbjct: 139 RLEEQ----------GRKVIDKTTTSTPVQVSLKVRIVELYRADLIKLGFDVSSVSSGSV 188

Query: 226 PSKSFAADFGGKFVSEGGD-------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                 +     F+S             + G  + F+   +L  LE+   I+ LAEP LT
Sbjct: 189 FKVVTGSGIAQDFMSTLIGSVEGQTRVGISGANNSFNVNAMLDLLEKRGYIQILAEPRLT 248

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            ++G+ A+F SGG+    +V+   G  +    + G+ + F P +L   +I + I +E+  
Sbjct: 249 TVTGEKATFRSGGEFAV-SVNQGNGVFTAEYKETGISIDFIPEILPGDKISIDISSEIKF 307

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                     P+  VR   T  ++ SG T  LAGL +      K G P LSKIP+ G L 
Sbjct: 308 VDPQSVVNSAPALLVRSVQTNAQVASGQTFALAGLYQLTQSSSKSGPPYLSKIPVFGNLL 367

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
             +  +REE E+    TP+LV      +  +P D
Sbjct: 368 SKTNESREERELIFFITPYLVHSSVPIEKKQPTD 401


>gi|254245567|ref|ZP_04938888.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia
           PC184]
 gi|124870343|gb|EAY62059.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia
           PC184]
          Length = 443

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 113/447 (25%), Positives = 177/447 (39%), Gaps = 49/447 (10%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVI 100
                 I + +     +     +Q V V DP  ADV++       ++ L  K  G  NV+
Sbjct: 21  ASASATIELAVGAQRQISAGRTLQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGATNVM 80

Query: 101 LI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           L   G D   + N++++        +   +  +  +  RV     T VL G   +++   
Sbjct: 81  LWERGRDEPTIWNVEVV--------DAAAQAVLDGAAPRVNAYGGTAVLQGSAASLEAHS 132

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH- 217
           RA  + +    +             V++   + G+  V + V + E  R +LKQ+GF   
Sbjct: 133 RAAAVGKNMSGKGV-----------VIDRSTVPGKSVVQVDVRVVEFSRSVLKQVGFNFF 181

Query: 218 -SITGSSSGPSKSFAADFGGKFVSE-------------GGDFSVKGVLDRFSFETVLHAL 263
               G S G                                F++            L  L
Sbjct: 182 KQSNGFSFGSFSPGGVQSYSGGSGPGTGGYVPTLGSPVASAFNLVVNAAGRGIFADLSLL 241

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E     R LAEPTL A+SGQSASF +GG+    +     G+T++    YGV L  TPTVL
Sbjct: 242 EANNLARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVL 300

Query: 324 SPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           SP RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+     
Sbjct: 301 SPSRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTM 360

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
                +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A   +           +
Sbjct: 361 SNVSKVPLLGDLPIIGTFFKNLSYQQNDKELLIIVTPHLVAPIAKGAVLPAT-----PGE 415

Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYK 466
                   V K Y    AS      + 
Sbjct: 416 LSEQRDGPVWKSYLGGAASPDAAPGFS 442


>gi|163857691|ref|YP_001631989.1| putative Flp pilus assembly secretin [Bordetella petrii DSM 12804]
 gi|163261419|emb|CAP43721.1| putative Flp pilus assembly secretin [Bordetella petrii]
          Length = 464

 Score =  253 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 122/480 (25%), Positives = 195/480 (40%), Gaps = 46/480 (9%)

Query: 7   TFFTMMSIFLFSSNPSVAKL--PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
                M   L  +  + A +         A     +       + IS+ +    +L +P 
Sbjct: 4   WMKPRMRASLLCTVLATAGVFYGAPVAGQARPAEPAAAAPAASQDISLAVKGQQLLPLPG 63

Query: 65  DVQDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               + V+DP  ADV V       P  + L GK+ G   V +   + +      + +   
Sbjct: 64  TPTRIAVADPDVADVKVLPAAAGRPAAVMLIGKSAGTTQVQVWARNSRSPATWTVHVT-- 121

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
              ++  L+R        V++     V+ G   +    Q +V  +   +        A +
Sbjct: 122 -GPVQAELQRRGQAGGANVDVAGTHAVVSGHAPSALSHQNSVAAAAASVGDKNVVDVATA 180

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
            S  V+ +     E             R ++KQ+G   S+TG++ G    F +       
Sbjct: 181 GSGGVVQVEVKVVEV-----------SRSVMKQVGL--SMTGNAGGWG--FGSRTSPDGF 225

Query: 240 SEGGDFSVKGVL--------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           S  G  + +GVL        D   F   L  L+     R LAEPTL A+SGQSASF +GG
Sbjct: 226 STPGTLNPRGVLSDGFNLLFDSNHFGATLRMLQSNGMARVLAEPTLVALSGQSASFLAGG 285

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--------EPVIGV 343
           +      S   G  +V    +G+ L  TPTVLS  RI L++  E S          + G 
Sbjct: 286 EIPIPE-SGGLGTQNVVFKPFGIGLTVTPTVLSRDRIALKVAPEASELDYVNGIPILNGE 344

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            A  +P+ R R+ADT +EL  G + V++GL+    +     +P L ++PI+GA FR   +
Sbjct: 345 TATLIPALRTRRADTMIELGDGESFVISGLVSRQTKASVNKVPFLGELPIIGAFFRGIEY 404

Query: 404 NREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           ++EE E+ I  TP LV+P+A    L  P +     D   +        + GP    +V G
Sbjct: 405 SQEEHELVIVVTPRLVRPIARGVALPLPGERQERPD---SITNAWGYYLMGPAGGQQVPG 461


>gi|188592032|ref|YP_001796630.1| type II secretion system protein; precursor [Cupriavidus
           taiwanensis LMG 19424]
 gi|170938406|emb|CAP63393.1| putative Type II secretion system protein; putative precursor
           [Cupriavidus taiwanensis LMG 19424]
          Length = 475

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 98/415 (23%), Positives = 173/415 (41%), Gaps = 42/415 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR---TMYLF 90
           A        +    +++ +       L+    V+ V V +P  AD ++   R   ++ L 
Sbjct: 38  ALAPRAQAQDAATARQLRLMAGAQKELRSAQPVERVAVGNPAVADALILRTRGAPSVLLV 97

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
            K  G  +V++    G +  N  + ++                   ++   +  V + G 
Sbjct: 98  AKQPGVTDVMVWTRGGAEPQNYSVQVDAIAPDANGA----------QLGYSAAGVTITG- 146

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
               Q             +++      +     V++   +     V + V + E+ + +L
Sbjct: 147 ----QSPDAYGAARAQAAARAATAGKTDGKPGLVVDRSTVPLSGTVQVDVKVVEISKTVL 202

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---------DRFSFETV-- 259
           K++G       +S     +F+     KF    G     G           + F+      
Sbjct: 203 KEVGINF-FRNNSGFAFGTFSPSTLNKFTFTPGSGGAPGSFSADIASPMSNAFNLVAASL 261

Query: 260 -------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
                  +  LE     R LAEP+L A+SGQSASF +GG+     V  + G T++    +
Sbjct: 262 THGIFANISLLEANGLARVLAEPSLVALSGQSASFLAGGEIPIP-VPQALGTTTIQFKPF 320

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTI 368
           G+ L  +PTVLS  RI L++  E S+      I +N   +P+   R+ADTTVEL  G + 
Sbjct: 321 GIGLTVSPTVLSADRIALKVAPEASDLDPSRGISINGAVVPAIVTRRADTTVELGDGESF 380

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           V+ GL+  +       +P+L  +P++GA F+N  F++E+ E+ I  TP LVKP+A
Sbjct: 381 VIGGLVSRNTVSNVNKVPVLGDLPVIGAFFKNLNFHQEDRELMIVVTPRLVKPMA 435


>gi|116694140|ref|YP_728351.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16]
 gi|113528639|emb|CAJ94986.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16]
          Length = 470

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 99/415 (23%), Positives = 174/415 (41%), Gaps = 42/415 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR---TMYLF 90
           A        E    +++ +       ++    V+ V V +P  AD +V   R   ++ L 
Sbjct: 33  ALAPRAQAQEAVNARQLRLLAGAQKEIRSAQPVERVAVGNPAVADALVLRTRGAPSVLLV 92

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
            K  G  +V++    G + L  ++ ++         +      + +       T+     
Sbjct: 93  AKQPGVTDVMVWTRGGAEPLTYNVQVDA--------IAPDADGAKLGYSAAGATI----- 139

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
             T Q             +++      +     V++   +     V + V + E+ + +L
Sbjct: 140 --TGQSPDAYAAARAQAAARAATTGKTDGKPGLVVDRSTVPLSGTVQVDVKVVEISKTVL 197

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---------DRFSFETV-- 259
           K++G       +S     +F+     KF    G     G           + F+      
Sbjct: 198 KEVGINF-FRNNSGFAFGTFSPSTLNKFTFTPGSGGAPGSFSADIASPMSNAFNLVAASL 256

Query: 260 -------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
                  +  LE     R LAEP+L A+SGQSASF +GG+     V  + G T++    +
Sbjct: 257 THGIFANISLLEANGLARVLAEPSLVALSGQSASFLAGGEIPIP-VPQALGTTTIQFKPF 315

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTI 368
           G+ L  +PTVLS  RI L++  E S+      I +N   +P+   R+ADTTVEL  G + 
Sbjct: 316 GIGLTVSPTVLSADRIALKVAPEASDLDPSRGISINGAVVPAIVTRRADTTVELGDGESF 375

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           V+ GL+  +       +P+L  +P++GA F+N  F++E+ E+ I  TP LVKP+A
Sbjct: 376 VIGGLVSRNTVSNVNKVPVLGDLPVIGAFFKNLNFHQEDRELMIVVTPRLVKPLA 430


>gi|115351456|ref|YP_773295.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
 gi|115281444|gb|ABI86961.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
          Length = 444

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 109/443 (24%), Positives = 184/443 (41%), Gaps = 41/443 (9%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP---RTMYLFGKNVGQANV 99
             G    I + +     +     +Q + V DP   DV+V       ++ L  K  G  NV
Sbjct: 23  AAGTNASIDLAVGSQRQVAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPGSTNV 82

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           +L      +    ++ +      ++   +  +  S  +V+      VL G   ++   +R
Sbjct: 83  LLWERGRDEPTVWNVNV------VDAAAQAALDGSAPKVKGYGGAAVLSGSSASLDAHER 136

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217
           AV + +    + G           V++   +     V + V + E  R +LK+ G     
Sbjct: 137 AVAVGKRMGGKDGT----------VIDASTVGNRSVVQVDVRVVEFSRSVLKEAGLNFFK 186

Query: 218 -----SITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERAT 267
                +    S G  +S        F + GG      F++            +  LE   
Sbjct: 187 QSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNISILEANN 246

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             R LA+PTL A+SGQSASF +GG+     V  + G+T++    YGV L  TPTVLS  R
Sbjct: 247 LARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIDWKQYGVGLTLTPTVLSQHR 305

Query: 328 IGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           I L++  E S+      + +N+  +P+   R+ADTTVEL  G + V+ GL+  +      
Sbjct: 306 IALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRETMSNIS 365

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +P+L  +PI+GA F++  + + + E+ I  TP LV P+A +    P    +   +    
Sbjct: 366 KVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVAPIA-KGAPLP----ATPGELSEQ 420

Query: 444 FFNRVNKIYGPKEASEVEGQNYK 466
               V + Y    AS      + 
Sbjct: 421 RDGPVWRSYLGGIASPDAAPGFS 443


>gi|330816715|ref|YP_004360420.1| Type II and III secretion system protein [Burkholderia gladioli
           BSR3]
 gi|327369108|gb|AEA60464.1| Type II and III secretion system protein [Burkholderia gladioli
           BSR3]
          Length = 477

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 124/490 (25%), Positives = 202/490 (41%), Gaps = 63/490 (12%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           ++++ +  S  +++         A V    D+ +G  ++I+ G N          +Q V 
Sbjct: 5   LIALAIAVSALALSSWASAAGPEAGV----DLAVGAQRQIASGRN----------LQRVA 50

Query: 71  VSDPTKADVVVH-SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
           V DP  AD+++      + L GK+ G  NV+L      +     + +    A        
Sbjct: 51  VGDPAVADILIIKGGGGVMLIGKSAGTTNVMLWERGRSEPTVYTVHVTSGAA------HA 104

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA------------ 177
            + D+  RV+   DT V+ G   T++  QRAV+++    +     Q +            
Sbjct: 105 LLNDATPRVDTYGDTTVISGSANTLEAHQRAVDVANAAAAARAAAQQSSSAGGGQGKGQA 164

Query: 178 -------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGS 222
                        +S+   V++   I+G + V + V + E  R  +KQ G     S  G 
Sbjct: 165 VGRGGGNGGGGGGDSAGPNVVDASTISGRNVVQVDVRVVEFSRSAIKQAGLNLFKSNNGF 224

Query: 223 SSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFSFETVLHALERATAIRTL 272
           S G     +        S G            F++            L  LE+    R L
Sbjct: 225 SFGSFAPSSLQSSSYNPSAGLTVTAVSPITSAFNLVVGSTSRGIAGNLSVLEQNNLARIL 284

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           A+PTL A+SGQSASF +GG+     V  S G  S+    YG+ L  TPTVL P RI L++
Sbjct: 285 AQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIEYKPYGIGLTVTPTVLGPNRIALKV 343

Query: 333 QTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
             E S+      I +N+  +P+   R+ADTTVEL  G + V+ GL+  +       +P L
Sbjct: 344 APEASQLDFLNAITINSITVPALTTRRADTTVELGDGESYVIGGLVDRETTSNVSKVPFL 403

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             +PI+GA F++  + + + E+    TP LV P+A             E      + + +
Sbjct: 404 GDLPIIGAFFKSLNYQQNDKELVFVVTPHLVSPIAAGASLPSTPGEQSEQRDGPVWRSFL 463

Query: 449 NKIYGPKEAS 458
             I  P  A 
Sbjct: 464 GGILVPDAAP 473


>gi|171317113|ref|ZP_02906316.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
 gi|171097747|gb|EDT42574.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
          Length = 443

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 112/445 (25%), Positives = 178/445 (40%), Gaps = 45/445 (10%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVI 100
                 I + +     +     +Q V V DP  ADV++       ++ L  K  G  NV+
Sbjct: 21  ASASGTIELAVGAQRQISAGRTLQRVAVGDPAVADVLIMKGSRSGSVLLTAKAPGATNVM 80

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L      +     + +      ++   +  +  S  RV     T VL G   ++    RA
Sbjct: 81  LWARGRDEPTVWSVEV------VDAAAQAVLDGSTPRVNAYGGTAVLQGTAASLDAHARA 134

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217
             + +             S+   V++   + G++ V + V + E  R +LKQ+GF     
Sbjct: 135 SAVGKNM-----------SAKGNVIDRSTVVGKNVVQVDVRVVEFSRSVLKQVGFNFFKQ 183

Query: 218 ----SITGSSSGPSKSFAADFGGKFV--------SEGGDFSVKGVLDRFSFETVLHALER 265
               S    S G  +S++   G                 F++            L  LE 
Sbjct: 184 SNGFSFGSFSPGGVQSYSGGAGPGTGGYVPTLGSPVASAFNLVVNAAGRGIFADLSLLEA 243

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R LAEPTL A+SGQSASF +GG+          G+T++    YGV L  TPTVL+P
Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVP-APQGLGSTAIQWKQYGVGLTLTPTVLNP 302

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+       
Sbjct: 303 NRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A   +           +  
Sbjct: 363 VSKVPLLGDLPIIGTFFKNLSYQQNDKELLIIVTPHLVAPIAKGAVLPAT-----PGELS 417

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
                 V + Y    AS      + 
Sbjct: 418 EQRDGPVWRSYLGGVASPDAAPGFS 442


>gi|170701752|ref|ZP_02892688.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133335|gb|EDT01727.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
          Length = 444

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 108/443 (24%), Positives = 184/443 (41%), Gaps = 41/443 (9%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP---RTMYLFGKNVGQANV 99
             G    I + +     +     +Q + V DP   DV+V       ++ L  K  G  NV
Sbjct: 23  AAGTNASIDLAVGSQRQIAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPGSTNV 82

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           +L      +    ++ +      ++   +  +  +  +V+      VL G   ++   +R
Sbjct: 83  LLWERGRDEPTVWNVNV------VDAAAQAALDGTGPKVKAYGGAAVLSGSSASLDAHER 136

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217
           AV + +    + G           V++   +     V + V + E  R +LK+ G     
Sbjct: 137 AVAVGKRMGGKDGT----------VIDASTVGNRSVVQVDVRVVEFSRSVLKEAGLNFFK 186

Query: 218 -----SITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERAT 267
                +    S G  +S        F + GG      F++            +  LE   
Sbjct: 187 QSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNISILEANN 246

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             R LA+PTL A+SGQSASF +GG+     V  + G+T++    YGV L  TPTVLS  R
Sbjct: 247 LARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIDWKQYGVGLTLTPTVLSQRR 305

Query: 328 IGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           I L++  E S+      + +N+  +P+   R+ADTTVEL  G + V+ GL+  +      
Sbjct: 306 IALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRETMSNIS 365

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +P+L  +PI+GA F++  + + + E+ I  TP LV P+A +    P    +   +    
Sbjct: 366 KVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVAPIA-KGAPLP----ATPGELSEQ 420

Query: 444 FFNRVNKIYGPKEASEVEGQNYK 466
               V + Y    AS      + 
Sbjct: 421 RDGPVWRSYLGGIASPDAAPGFS 443


>gi|261856884|ref|YP_003264167.1| type II and III secretion system protein [Halothiobacillus
           neapolitanus c2]
 gi|261837353|gb|ACX97120.1| type II and III secretion system protein [Halothiobacillus
           neapolitanus c2]
          Length = 443

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 103/451 (22%), Positives = 177/451 (39%), Gaps = 51/451 (11%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           +++++LFS     A  P + +A                 +++   + ++   P  +  V 
Sbjct: 15  LLALWLFSVPVFSADAPALPDA-----------------VTMYAGQALVRSAPGSLLRVA 57

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V +    +V V   R M +     G  ++ L   DG +      ++  +   +   +R  
Sbjct: 58  VGNGKLVEVRVLGRRQMVIIANQAGDTSLQLWMRDGSRRSIDLHIVSGNTDQVAELVRTL 117

Query: 131 IADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
           +  S  + V  V   VVL G+  T +D  +   + + +       Q              
Sbjct: 118 LKASKAVSVNTVGGNVVLSGVNLTQEDVAQIAAIKKVYPQVLDFTQANA----------- 166

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +  +  V +KV I E  +  L QIG +        GP  + A DF    +      S  G
Sbjct: 167 VQMKPMVMMKVRIMEFDKSALHQIGIKW--DSVIDGPGGALAHDFASNSLYRMTPSSFGG 224

Query: 250 VLDR-------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           +                       S  + ++ + +      LA P L A SG +A F  G
Sbjct: 225 IGANGAVNLPLSLSGTPAFFGLVTSITSKINLMMQTGNAWELATPQLAARSGGTADFLVG 284

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G+     ++   G TSV    YG+ LH  P V S G I   I+ E+S     V     P 
Sbjct: 285 GEVPIP-IAQGLGQTSVEYKPYGIKLHIEPVVSSTGDISTTIKAEISHIDPSVTVQGYPG 343

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  RKA T V +  G TIV++GL+     +  + +P L +IP+LG LFR+  F  + +++
Sbjct: 344 FLTRKASTEVNVHEGQTIVISGLVDSSASKTIDKVPGLGQIPVLGELFRSRDFKSKRSDL 403

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
            I  TP+LV P A  + +       + D+ +
Sbjct: 404 VIFVTPYLVTPDAPLNKALISKSNKLADEFR 434


>gi|33593025|ref|NP_880669.1| putative type II secretion system protein [Bordetella pertussis
           Tohama I]
 gi|33563400|emb|CAE42276.1| putative type II secretion system protein [Bordetella pertussis
           Tohama I]
 gi|332382437|gb|AEE67284.1| putative type II secretion system protein [Bordetella pertussis CS]
          Length = 449

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 117/429 (27%), Positives = 189/429 (44%), Gaps = 36/429 (8%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS-----PRTMYLFGKNVGQANVILI 102
           +++ + +     L++      V ++DP  ADV V +     P  + L G+  G   + + 
Sbjct: 40  RELLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVW 99

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
               +      + +   +  ++  L R       +V+M  D+ V+ GM  +         
Sbjct: 100 SRGSRDPQVWTVRV---LPQVQAALARRGVGGGAQVDMAGDSGVVTGMAPSA-------- 148

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             E     +     A   + KV+++  I     V ++V + E+ R ++K +G        
Sbjct: 149 --EAHRGAAEAAAAAAGGNDKVVDMSQINTSGVVQVEVKVVELARSVMKDVGINFRADSG 206

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                 S   D        GG F +     R  F   L  L+     R LAEPTL A+SG
Sbjct: 207 PWSGGVSLLPDLA-----SGGMFGMLSYTSR-DFSASLALLQNNGMARVLAEPTLLAMSG 260

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
           QSASF +GG+     VS+  G TSV    +G+ L  TPTV+S  RI L++  E       
Sbjct: 261 QSASFLAGGEIPIP-VSAGLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYA 319

Query: 336 --VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             +S          +P+ R RKADT VEL  G T V++GL+    +     +PLL  +PI
Sbjct: 320 NGISSIDSNNRITVIPALRTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPI 379

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           +GA FRN ++++E+ E+ I  TP LV+P+A R ++ P      E  + A F      + G
Sbjct: 380 IGAFFRNVQYSQEDRELVIVVTPRLVRPIA-RGVTLPLPGARQEV-SDAGFNAWGYYLLG 437

Query: 454 PKEASEVEG 462
           P    ++ G
Sbjct: 438 PMSGQQMPG 446


>gi|33596969|ref|NP_884612.1| putative type II secretion system protein [Bordetella parapertussis
           12822]
 gi|33600811|ref|NP_888371.1| putative type II secretion system protein [Bordetella
           bronchiseptica RB50]
 gi|33566420|emb|CAE37673.1| putative type II secretion system protein [Bordetella
           parapertussis]
 gi|33568411|emb|CAE32323.1| putative type II secretion system protein [Bordetella
           bronchiseptica RB50]
          Length = 448

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 116/429 (27%), Positives = 189/429 (44%), Gaps = 36/429 (8%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILI 102
           +++ + +     L++      V ++DP  ADV V +P       + L G+  G   + + 
Sbjct: 39  RELLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVW 98

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
               +      + +   +  ++  L R       +V+M  D+ V+ GM  + +       
Sbjct: 99  SRGSRDPQVWTVRV---LPQVQAALARRGVGGGAQVDMAGDSGVVTGMAPSAE------- 148

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
                   +     A   + KV+++  I     V ++V + E+ R ++K +G        
Sbjct: 149 ---AHRGAAEAAAAAAGGNDKVVDMSQINTSGVVQVEVKVVELARSVMKDVGINFRADSG 205

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                 S   D        GG F +     R  F   L  L+     R LAEPTL A+SG
Sbjct: 206 PWSGGVSLLPDLA-----SGGMFGMLSYTSR-DFSASLALLQNNGMARVLAEPTLLAMSG 259

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
           QSASF +GG+     VS+  G TSV    +G+ L  TPTV+S  RI L++  E       
Sbjct: 260 QSASFLAGGEIPIP-VSAGLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYA 318

Query: 336 --VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             +S          +P+ R RKADT VEL  G T V++GL+    +     +PLL  +PI
Sbjct: 319 NGISSIDSNNRITVIPALRTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPI 378

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           +GA FRN ++++E+ E+ I  TP LV+P+A R ++ P      E  + A F      + G
Sbjct: 379 IGAFFRNVQYSQEDRELVIVVTPRLVRPIA-RGVTLPLPGARQEV-SDAGFNAWGYYLLG 436

Query: 454 PKEASEVEG 462
           P    ++ G
Sbjct: 437 PMSGQQMPG 445


>gi|323525746|ref|YP_004227899.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
 gi|323382748|gb|ADX54839.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
          Length = 474

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 115/471 (24%), Positives = 189/471 (40%), Gaps = 51/471 (10%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPRT--MY 88
             +  ++ +    G  + + I +     L     ++ V + DP+ ADV V+   RT  + 
Sbjct: 7   GASMAVSPAGFAAGGAQALDIVVGSQQSLASGHTLRRVAIGDPSVADVLVIRGDRTGGVL 66

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           L GK+ G  NV+L        L+  + +    A      +  +      V+++ DT ++ 
Sbjct: 67  LIGKSPGSTNVMLWEQGKDAPLSYVVNVSSPAA------KSLLGPDTPSVKVLGDTALIS 120

Query: 149 GMVRTIQDSQRAVELSETFLSQSGR---------------------------NQYANSSS 181
           G   T++  QRAV  +     Q                                    S 
Sbjct: 121 GSAPTMEAHQRAVAAAGIEAHQRATLGSAAKGGTGGKAGVASALAGADAANGGASGGESG 180

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-----HSITGSSSGPSKSFAADFGG 236
            ++ +   +A    V + V + E  R +LKQ+G       +  T  S  PS   +A +G 
Sbjct: 181 TQIYDSSTVATRSVVQVDVRVVEFSRTVLKQVGLNILKQNNGFTFGSFAPSALSSATYGA 240

Query: 237 KFVSEG-----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                        F++            L  +E     R LAEPTL A+SGQSASF +GG
Sbjct: 241 TPTFNSVAPISSAFNLVFNSATHGLFADLSLMESNNLARILAEPTLVALSGQSASFLAGG 300

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD 347
           +     +    G TS+    YGV L  TPTVLSP RI L++  E S+      + ++   
Sbjct: 301 EIPVP-IPQGLGTTSIEYKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVS 359

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P+   R+ DTTVEL  G + V+ GL+  +       +PLL  +P++GA F+   + + +
Sbjct: 360 VPAITTRRTDTTVELGDGESFVIGGLIDRETISNVAKVPLLGDLPVIGAFFKQLNYQQND 419

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
            E+ I  TP LV P+A             E      + + +  +     A 
Sbjct: 420 KELVIIVTPHLVSPLAKGATLPATPGEQSEQRNAPVWRSLLGGVAARDAAP 470


>gi|91775995|ref|YP_545751.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91709982|gb|ABE49910.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 453

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 112/409 (27%), Positives = 195/409 (47%), Gaps = 39/409 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
           + ++I + + +  + +  V +Q V V++P    V + SP+TM +  K VG   + L    
Sbjct: 26  QAEEIMVSMGQQRLYEHTVTLQRVAVANPEVLAVTLTSPKTMMIVPKAVGATEISLWDSQ 85

Query: 106 GKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
             Q   +  + +   +A LE    +    + ++VE   + + L G  R++++  RA+E  
Sbjct: 86  SVQPSRVLQVSVTPSLA-LEGQGLKAADAAGLQVEAAGNGLALSGEARSLEEHARALESL 144

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----QHSIT 220
           +                +  +++ +   +  V + + + EV R    + GF     +S +
Sbjct: 145 QK-------------ERQGALDVTSSEFDSHVQIDIKVVEVSRQNAMRFGFLMGKNNSAS 191

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKG----VLDRFS---------FETVLHALERAT 267
               G   S  +  G +  S G DFS       VL+ F+             L  LE   
Sbjct: 192 RDGFGIVASPNSFSGVEAGSGGFDFSSTSGFLPVLNAFNVVFGNHGSGLLGTLSILEGNG 251

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              TLAEP+L+AISGQ+A+F +GG+      T   S  A ++   +YGV L  TPT+LS 
Sbjct: 252 FAYTLAEPSLSAISGQTATFLAGGEFPVPIRTGGGSDSAITIRYKEYGVRLMLTPTILSG 311

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L++  EVSE      +      +P  +VR+ +T+V L +G + V++G++  +    
Sbjct: 312 ERIFLKVAPEVSELDFANAVQTGGVAVPGLKVRRTETSVSLGNGESFVISGMVSRNTINN 371

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            + +P L  IPI+GA F + RF+RE+ E+ +  TP LV+P+A R+   P
Sbjct: 372 IDKVPGLGNIPIIGAFFSSKRFDREDKELLMVVTPRLVRPIA-RNAELP 419


>gi|167836794|ref|ZP_02463677.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 423

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 187/454 (41%), Gaps = 50/454 (11%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MY 88
            A AA +   ++  G  ++I++G            VQ V + DP  ADV+V       + 
Sbjct: 1   AAQAAEMGAIELTTGAQRQIAVGRG----------VQRVAIGDPNVADVLVIKGGRGGVL 50

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           L  K  G  ++++      +     + +    A      R  +      V     T V+ 
Sbjct: 51  LVAKAAGSTSLMVWERGRDEPAVYTVDVVSGAA------RALLDGGAPGVRAYDGTAVVS 104

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G   T+    RA+ + +    + G    A+           + G++ V + V + E  R 
Sbjct: 105 GSAATLDAHARALAVGKGMAGKGGGVVDAS----------TVGGKNVVQVDVRVVEFSRS 154

Query: 209 ILKQIGFQH-----SITGSSSGPSKSFAADFGGKF-------VSEGGDFSVKGVLDRFSF 256
           +LKQ G          T  S  P+   +   GG         +     F++         
Sbjct: 155 VLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGL 214

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
              L  LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L
Sbjct: 215 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 273

Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
             TPTVLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ G
Sbjct: 274 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGG 333

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L+  +     + +P L  +PI+G  F++  + + + E+ I  TP LV P+A ++ S P  
Sbjct: 334 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 390

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
             +   +        V + Y     S   G  + 
Sbjct: 391 --ATPGELSEQRDGPVWRSYLGGALSPDAGPGFS 422


>gi|198284413|ref|YP_002220734.1| type II and III secretion system protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666419|ref|YP_002427081.1| bacterial type II/III secretion system protein [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248934|gb|ACH84527.1| type II and III secretion system protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518632|gb|ACK79218.1| bacterial type II/III secretion system protein [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 478

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 121/493 (24%), Positives = 202/493 (40%), Gaps = 44/493 (8%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANA-AVINISDVEIGKGKKISIGLNKVIILQV 62
           +++   + +++   ++  S         A   A  + +  + G  + ++I +     L  
Sbjct: 1   MRKWMMSSLAVATLAALGSQGAWAEGPAAEGGAHPSWAAHQSGGYRALNIPVGTQQTLSF 60

Query: 63  PVDVQDVLVSDPTKADVVVH---SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
                 V V +P  A V        R   + G + G  ++++     K      + +   
Sbjct: 61  TEPAYRVAVGNPKTASVAPLPRSGGRQFLITGLSTGTTSLLVWNLGHKTPKVWQLQVSVP 120

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           +           A     V    D V L G V      + A+E +     ++G       
Sbjct: 121 VPG---APLAAPAPGMPEVRAQGDAVTLSGAVADQVKHEAALEAAALAAGKTG------- 170

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSS----GPSKSFAADF 234
              KV++   I  +D+V + V + E  +  LK +G    S TG  S    GPS   +A++
Sbjct: 171 ---KVIDQSVIPVDDEVQVGVKVVEFSKAQLKNVGINIFSSTGGFSLGTFGPSTLTSANY 227

Query: 235 GGKFVSEG-------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                S G               F++ G +      + L  LE    +R LAEPTL A++
Sbjct: 228 PVSLASGGPGALAITGVAPFTQAFNLVGGVGNSGLSSYLSLLEGNNILRVLAEPTLVAMN 287

Query: 282 GQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS- 337
           GQ ASF +GG+       SS   T   ++    YGV L  TPT+LS  RI L +   VS 
Sbjct: 288 GQQASFLAGGEIPIPVPQSSGVGTPTITIQYKKYGVQLDLTPTILSAHRIALHVAPSVSS 347

Query: 338 ---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                 I +N   +P+  VR+ADTTV L +G ++V+ GL+   +QQ    +P+L  +PIL
Sbjct: 348 LDYTNAITLNGYSVPALLVRQADTTVTLGNGESLVIGGLVDRQMQQNISKVPILGDLPIL 407

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
           GA FR+ ++++++ E+ I  TP LV+P+A      P    +       F   +   + G 
Sbjct: 408 GAFFRSIQYSKQDMELAIIVTPRLVRPIAAGAKLPPLPGAAFAHSR--FNLGKAVLLPGS 465

Query: 455 KEASEVEGQNYKG 467
                  G  Y  
Sbjct: 466 DYNQPDNGPGYSQ 478


>gi|152989020|ref|YP_001350207.1| putative type II secretion system protein [Pseudomonas aeruginosa
           PA7]
 gi|150964178|gb|ABR86203.1| probable type II secretion system protein [Pseudomonas aeruginosa
           PA7]
          Length = 408

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 96/427 (22%), Positives = 175/427 (40%), Gaps = 77/427 (18%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           + +  ++S+   +   L++ V ++ + + DP  ADV +    ++ + GK  G  ++++  
Sbjct: 28  LAQAPQVSVAQGQQNDLRLAVPIKRLAIGDPQIADVQLLDRSSLLVTGKEQGSTSLLIWT 87

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
               + L   + +E                               G V T          
Sbjct: 88  ACSAEPLRSQVAVEG-----------------------------RGSVDTAAAPALGAGG 118

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ---IGFQHSIT 220
           ++                            +QV   +   EV R  LKQ      +    
Sbjct: 119 ADEL-------------------------PNQVQTDIRFVEVSRSKLKQASTSFVRRGGN 153

Query: 221 GSSSGPSKSF--------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
               G   S          +  GG F +    F++  +     + + ++ALE +    TL
Sbjct: 154 LWVLGAPGSLGDIKVNADGSGLGGTFGAGASGFNL--IFGGGKWLSFMNALEGSGFAYTL 211

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           A P+L A+SGQSASF +GG+      + +    ++   ++G+ L  TPTV++  RI L++
Sbjct: 212 ARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKV 271

Query: 333 QTEVSEP--VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
             EVSE     G+ +G   +P+ RVR+ DT+V L  G + V++GL   +     +  P L
Sbjct: 272 APEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWL 331

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP-----DDHYSVEDDAKAF 443
             IPILGA FR+++ ++++ E+ +  TP LV+P+A  D   P        +     ++ +
Sbjct: 332 GDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAA-DAQLPGLPGEGLRHYDPGFSRLY 390

Query: 444 FFNRVNK 450
           F  R   
Sbjct: 391 FLERGEY 397


>gi|327538064|gb|EGF24754.1| bacterial type II/III secretion system protein [Rhodopirellula
           baltica WH47]
          Length = 758

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 119/506 (23%), Positives = 194/506 (38%), Gaps = 65/506 (12%)

Query: 18  SSNPSVAKLPPIKEAN-AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
           S  P+   LPP  +A         + EI     +S+ L +  IL++      + V D   
Sbjct: 163 SGLPAELILPPPSDAAKQRASRFVESEIDPEIPLSLVLGRPKILRLADTPTRIYVPDEDT 222

Query: 77  ADVVVH---SPRTMYLFGKNVGQANVILIGHD-----GKQMLNLDILIERD------IAH 122
               +    S R + + G   G   ++L   D     G+ +++  + +  D      +  
Sbjct: 223 IRTEIIDQESGRELAVTGVQPGTTTLMLWFKDSGAPSGQSVVSYLVRVYEDPILAKPVGD 282

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS-QSGRNQYANS-- 179
           LE  L     +S + ++ ++D +++ G      +  + +++       ++G  + AN   
Sbjct: 283 LETELNEKFPNSFVELDEIADRLIVRGQAPDAIEMSQILQILTGARGVRAGLTRPANPVT 342

Query: 180 --------------------------------SSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
                                           S   ++N + I GE QV LKVT+AEV R
Sbjct: 343 VAAAYDFVGAVDPLTSEEAAAERRRNLDPIALSQAGIINQMKIVGEQQVMLKVTVAEVNR 402

Query: 208 DILKQIGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
              + IG    +   +     +S   +        G +  +   LD       + AL R 
Sbjct: 403 SAARSIGLNFGVDNDNGLTVFQSLTGNLANTQNQSGAN--ILASLDMGQVRLAIEALRRL 460

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVL 323
              RTLAEP L A++GQ A F +GGQ     +SS     +   V+   +GV L FTP + 
Sbjct: 461 NLSRTLAEPNLVAMNGQPADFQAGGQFPIPIISSGGVGNNLQGVSFVPFGVQLQFTPFIQ 520

Query: 324 SPGRIGLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSGGTIVLAGLLK 375
               I L++  EVS     +            +     R   TTV+L SG TI +AGLL+
Sbjct: 521 DRDVIRLQMNAEVSTRDESLGTSIGGGGGGTQVSGLNSRNFSTTVQLRSGQTIAVAGLLQ 580

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHY 434
            +     +  P    +PI+GA    +R +  E E+ I  TP LV PV   +    P    
Sbjct: 581 TNYGASSDRTPFWGDLPIIGATGGVNRSSSGEQELVILVTPHLVAPVDACETPALPGSDV 640

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEV 460
               D + F  NR+         S V
Sbjct: 641 YEPSDIEFFIANRLESRRSKDHRSSV 666


>gi|238027562|ref|YP_002911793.1| type II and III secretion system protein [Burkholderia glumae BGR1]
 gi|237876756|gb|ACR29089.1| Type II and III secretion system protein [Burkholderia glumae BGR1]
          Length = 476

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 116/451 (25%), Positives = 192/451 (42%), Gaps = 59/451 (13%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
           L +   +++ +     ANAA ++   D+ +G  ++I+ G +          +Q V + DP
Sbjct: 5   LIALAMAMSAVMASAVANAAGLDAGVDLAVGAQRQIATGRS----------LQRVAIGDP 54

Query: 75  TKADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
             ADV+V       + L GK+ G  NV+L      +     + +    A      +  + 
Sbjct: 55  AVADVLVVKGNGGGVLLIGKSAGTTNVMLWERGRSEPDVYPVHVTSGAA------KALLG 108

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS----------- 181
               RV+   DT V+ G   T++  QRAV+++    +     Q     +           
Sbjct: 109 PDTPRVDTYGDTTVIAGSATTLEAHQRAVDVANAAAAARAAAQAGGGGAAAAAGVGGKTA 168

Query: 182 ------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPS 227
                         V++   I+G + V + V + E  R  +KQ G     S  G + G  
Sbjct: 169 GAGGMGGAGGAAPSVVDASTISGRNVVQVDVRVVEFSRSAVKQAGLNFFKSSNGFAFGSF 228

Query: 228 KSFAADFGGKFVSE----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
              +    G   +              F++          + L  LE+    R LA+PTL
Sbjct: 229 APSSLSSLGSSATSGLAVTAAQPIASAFNLVVGSASRGISSNLSILEQNNLARILAQPTL 288

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            A+SGQSA+F +GG+     V  + G  S+    YG+ L   PTVL P RI L++  E S
Sbjct: 289 VALSGQSANFLAGGEIPVP-VPQALGTVSIEWKPYGIGLTVAPTVLGPNRIALKVAPEAS 347

Query: 338 E----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           +      I +N   +P+   R+ADTTVEL  G + V+ GL+  +       +P L  +PI
Sbjct: 348 QLDFVNAITINGVTVPALTTRRADTTVELGDGESYVIGGLVDRETTSNLSKVPFLGDLPI 407

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           +GA F++  + + + E+ I  TP LV P+A 
Sbjct: 408 IGAFFKSLSYQQNDKELVIIVTPHLVSPIAA 438


>gi|311107631|ref|YP_003980484.1| type II and III secretion system family protein 2 [Achromobacter
           xylosoxidans A8]
 gi|310762320|gb|ADP17769.1| bacterial type II and III secretion system family protein 2
           [Achromobacter xylosoxidans A8]
          Length = 453

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 198/477 (41%), Gaps = 42/477 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M+  QRT    +      S  +   L  +  A  A          +   +++   + ++L
Sbjct: 1   MKKHQRTTMICLL-----SAAAAMTLGGLSLAQTAAPAAGANAPVRDISMAVKGQQSLVL 55

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
                   + + DP  ADV V         ++ L+GK  G   + +   +       ++ 
Sbjct: 56  DGGAPA-RIAIGDPDVADVKVLPATGKRAASVLLYGKKPGTTQLQIWTGNNAAPQIWNVR 114

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           +      ++  L          V++     V+ G   +      +  ++ + +       
Sbjct: 115 VG---GSVQGALASRGLGGGANVDIADGHAVVSGHAESQLGQIASATMAASAVGGE---- 167

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSFAADF 234
                 K V+++        V ++V + EV R ++K  G   +   G  SG S +  A  
Sbjct: 168 ------KNVVDMSTAGTGGVVQVEVKVVEVSRSVMKAAGISFTASNGPWSGGSSTMPASL 221

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           GG   S    F      D  +F   L  L+     R LAEPTL A++GQSASF +GG+  
Sbjct: 222 GGALASGFSLF-----YDSNNFSARLRLLQTNGMARVLAEPTLVALTGQSASFLAGGELP 276

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNA 345
                   G  +VT   +G+ L  TPTVLS  RI L++  E SE               +
Sbjct: 277 IPQA-GGLGTVNVTFKPFGIGLTVTPTVLSRDRISLKVAPEASELDYTNGIAINTSADTS 335

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+ R R+ADTTVEL  G + V++GL+    + +   +P+L  +PI+G+ FR+  +++
Sbjct: 336 TIIPALRTRRADTTVELGDGESFVISGLVSRQTKAMVNKVPMLGDLPIIGSFFRSVDYSQ 395

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           E+TE+ I  TP LV+P+A R ++ P      E      F      + GP    ++ G
Sbjct: 396 EDTELVIVVTPRLVRPIA-RGVALPLPGAKQEQT-DTAFNAWGYYLTGPMGGQQMPG 450


>gi|32477871|ref|NP_870865.1| type II secretion system protein [Rhodopirellula baltica SH 1]
 gi|32448428|emb|CAD77943.1| probable type II secretion system protein [Rhodopirellula baltica
           SH 1]
          Length = 704

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 119/506 (23%), Positives = 194/506 (38%), Gaps = 65/506 (12%)

Query: 18  SSNPSVAKLPPIKEAN-AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
           S  P+   LPP  +A         + EI     +S+ L +  IL++      + V D   
Sbjct: 109 SGLPAELILPPPSDAAKQRASRFVESEIDPEIPLSLVLGRPKILRLADTPTRIYVPDEDT 168

Query: 77  ADVVVH---SPRTMYLFGKNVGQANVILIGHD-----GKQMLNLDILIERD------IAH 122
               +    S R + + G   G   ++L   D     G+ +++  + +  D      +  
Sbjct: 169 IRTEIIDQESGRELAVTGVQPGTTTLMLWFKDSGAPSGQSVVSYLVRVYEDPILAKPVGD 228

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS-QSGRNQYANS-- 179
           LE  L     +S + ++ ++D +++ G      +  + +++       ++G  + AN   
Sbjct: 229 LETELNEKFPNSFVELDEIADRLIVRGQAPDAIEMSQILQILTGARGVRAGLTRPANPVT 288

Query: 180 --------------------------------SSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
                                           S   ++N + I GE QV LKVT+AEV R
Sbjct: 289 VAAAYDFVGAVDPLTSEEAAAERRRNLDPIALSQAGIINQMKIVGEQQVMLKVTVAEVNR 348

Query: 208 DILKQIGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
              + IG    +   +     +S   +        G +  +   LD       + AL R 
Sbjct: 349 SAARSIGLNFGVDNDNGLTVFQSLTGNLASTQSQSGAN--ILASLDMGQVRLAIEALRRL 406

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVL 323
              RTLAEP L A++GQ A F +GGQ     +SS     +   V+   +GV L FTP + 
Sbjct: 407 NLSRTLAEPNLVAMNGQPADFQAGGQFPIPIISSGGVGNNLQGVSFVPFGVQLQFTPFIQ 466

Query: 324 SPGRIGLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSGGTIVLAGLLK 375
               I L++  EVS     +            +     R   TTV+L SG TI +AGLL+
Sbjct: 467 DRDVIRLQMNAEVSTRDESLGTSIGGGGGGTQVSGLNSRNFSTTVQLRSGQTIAVAGLLQ 526

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHY 434
            +     +  P    +PI+GA    +R +  E E+ I  TP LV PV   +    P    
Sbjct: 527 TNYGASSDRTPFWGDLPIIGATGGVNRSSSGEQELVILVTPHLVAPVDACETPALPGSDV 586

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEV 460
               D + F  NR+         S V
Sbjct: 587 YEPSDIEFFIANRLESRRSKDHRSSV 612


>gi|299069498|emb|CBJ40767.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
           CMR15]
          Length = 467

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/409 (22%), Positives = 174/409 (42%), Gaps = 37/409 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP----RTMYL 89
           A         +  G+ + +       +++   ++ + + +P  AD ++        ++ +
Sbjct: 33  ALAPAAHAQGMPAGQVLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLI 92

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149
             K  G AN+++    G  +   ++ ++ +             D  ++      T VL G
Sbjct: 93  IAKKPGAANILVWTQGGTAL-TYNVQVDAEPRG------AGSPDLAVQ----GSTAVLTG 141

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            V+ +    RA + +                   +++   +A    V + V + E  + +
Sbjct: 142 QVKDVYSLARARKSAAVAGGAE------PPKGGNMIDNTTLAVPGTVQVDVRVVEFSKTV 195

Query: 210 LKQIGF-----QHSITGSSSGPSK------SFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           LK+ GF     +   T  S  PS       +  +         G  F++           
Sbjct: 196 LKEAGFIFTRTRGGFTFGSFSPSTLTQYTVTPTSLTTQSTTPIGTAFNLLISSFSKGIFA 255

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            L  +E     R LAEP+L A+SGQSA+F +GG+     V  + G T++    +G+ L  
Sbjct: 256 DLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFGIGLTV 314

Query: 319 TPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           +PT+LS  RI L++  E S+      + +N   +P+   R+ADTTVEL  G + V+ GL+
Sbjct: 315 SPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADTTVELGDGESFVIGGLV 374

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                   + +P L  +PI+G  F+   +N+EE E+ I  TP LV+P+A
Sbjct: 375 SRTTLSNVDKVPFLGDVPIIGTFFKRLDYNQEERELVIIVTPRLVRPMA 423


>gi|300697742|ref|YP_003748403.1| pilus assembly protein (cpaC) [Ralstonia solanacearum CFBP2957]
 gi|299074466|emb|CBJ54016.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
           CFBP2957]
          Length = 462

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/406 (23%), Positives = 174/406 (42%), Gaps = 37/406 (9%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMYLFGK 92
             +    + +G  + +       +++   ++ + + +P  AD ++   R    ++ +  K
Sbjct: 31  PGVHAQSMPEGPVVHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLLIVAK 90

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G A++++    G  +   ++ ++ +             D  ++      T VL G VR
Sbjct: 91  KPGAASIMVWTQGGTAI-TYNVQVDAEARG------AGSPDLAVQ----GGTAVLTGQVR 139

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                     L+    + +            +++   +A    V + V + E  + +LK+
Sbjct: 140 D------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVPGTVQVDVRVVEFSKTVLKE 193

Query: 213 IGF-----QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFETVLH 261
            GF     +   T  S  PS           +S     +V    +             L 
Sbjct: 194 AGFIFTRTRGGFTFGSFSPSSLTQYTVTPSSLSTQSTTAVSSAFNLLISSFSKGIFADLS 253

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
            +E     R LAEP+L A+SGQSA+F +GG+     V  + G T++    +G+ L  +PT
Sbjct: 254 LIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFGIGLTVSPT 312

Query: 322 VLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           +LS  RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ GL+   
Sbjct: 313 ILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFVIGGLVSRT 372

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                + +P L  +PI+G+ F+   +N+EE E+ I  TP LV+P+A
Sbjct: 373 TLSNVDKVPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMA 418


>gi|300694111|ref|YP_003750084.1| pilus assembly protein (cpac) [Ralstonia solanacearum PSI07]
 gi|299076148|emb|CBJ35461.2| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
           PSI07]
          Length = 462

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 96/414 (23%), Positives = 176/414 (42%), Gaps = 45/414 (10%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMYLFGK 92
             +    +   + + +       +++   ++ + + +P  AD ++        ++ +  K
Sbjct: 23  PGVHAQSMPADQALHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLIVAK 82

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G AN+++    G  +   ++ ++               D  ++      T VL G V+
Sbjct: 83  KPGAANIMVWTQGGTAI-TYNVQVDAAPRG------AGSPDLAVQ----GATAVLTGQVK 131

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                     L+    + +       S S  +++   IA    V + V + E  + +LK+
Sbjct: 132 D------VYSLARARKAAAVAGGAEPSKSGSMVDNTTIAVPGTVQVDVRVVEFSKTVLKE 185

Query: 213 IGFQHS--------ITGSSSGPSKSFAADFGGKFVSEGG-----------DFSVKGVLDR 253
            GF  S         + S S  S++  A       S  G            F++      
Sbjct: 186 AGFSFSRTRGGFTFGSYSPSSLSQATPAWLSSTASSSSGLTVQSTQPVSTAFNLLLSSVS 245

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 L  +E     R LAEP+L A+SGQSA+F +GG+     V  + G T++    +G
Sbjct: 246 KGIFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFG 304

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           + L  +PT+LS  RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V
Sbjct: 305 IGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFV 364

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           + GL+        + +P L  +P++G+ F+   +N+EE E+ I  TP LV+P+A
Sbjct: 365 IGGLVSRTTLSNVDKVPFLGDVPVIGSFFKRLDYNQEERELVIIVTPHLVRPMA 418


>gi|17549308|ref|NP_522648.1| outer membrane channel signal peptide protein [Ralstonia
           solanacearum GMI1000]
 gi|17431560|emb|CAD18238.1| probable pilus assembly, secretin cpac signal peptide protein
           [Ralstonia solanacearum GMI1000]
          Length = 454

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 93/399 (23%), Positives = 171/399 (42%), Gaps = 37/399 (9%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP----RTMYLFGKNVGQANV 99
           +   + + +       +++   ++ + + +P  AD ++        ++ +  K  G AN+
Sbjct: 30  MPADQALHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLIIAKKPGAANI 89

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           ++    G  +   ++ ++ +             D  ++      T VL G V+       
Sbjct: 90  MVWTQGGTAL-TYNVQVDAEPRG------AGSPDLAVQ----GSTAVLTGQVKD------ 132

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF---- 215
              L+    S +            V++   +A    V + V + E  + +LK+ GF    
Sbjct: 133 VYSLARARKSAAAAGGAEPPKGGSVIDNTTMAVPGTVQVDVRVVEFSKTVLKEAGFIFTR 192

Query: 216 -QHSITGSSSGPSKSFAADFGGKFVSE------GGDFSVKGVLDRFSFETVLHALERATA 268
            +   T  S  PS           ++       G  F++            L  +E    
Sbjct: 193 TRGGFTFGSFSPSSLTQYTVTPSSLTTQSTTPIGTAFNLLISSFSKGIFADLSLIESNGL 252

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            R LAEP+L A+SGQSA+F +GG+     V  + G T++    +G+ L  +PT+LS  RI
Sbjct: 253 ARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFGIGLTVSPTILSENRI 311

Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L++  E S+      + +N   +P+   R+ADTTVEL  G + V+ GL+        + 
Sbjct: 312 ALKVAPEASDLDFSRGVTLNGATVPAIVTRRADTTVELGDGESFVIGGLVSRTTLSNVDK 371

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +P L  +PI+G  F+   +N+EE E+ I  TP LV+P+A
Sbjct: 372 VPFLGDVPIIGTFFKRLNYNQEERELVIIVTPRLVRPMA 410


>gi|116052338|ref|YP_792649.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587559|gb|ABJ13574.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 416

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 97/424 (22%), Positives = 174/424 (41%), Gaps = 71/424 (16%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           + +  ++ +   +   L++ V ++ + + DP  ADV +   R   + GK  G  ++++  
Sbjct: 36  LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
               + L   + +E                               G V T          
Sbjct: 96  GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ---IGFQHSIT 220
                   G   +   +++++ N        QV   +   EV R  LKQ      +    
Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161

Query: 221 GSSSGPSKSF------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
               G   S       A   G       G      +     + + ++ALE +    TLA 
Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P+L A+SGQSASF +GG+      + +    ++   ++G+ L  TPTV++  RI L++  
Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281

Query: 335 EVSEP--VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE     G+ +G   +P+ RVR+ DT+V L  G + V++GL   +     +  P L  
Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA----MRDLSRPDDHYSVEDDAKAFFFN 446
           IPILGA FR+++ ++++ E+ +  TP LV+P+A    + DL      +     ++ +F  
Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401

Query: 447 RVNK 450
           R   
Sbjct: 402 RGEY 405


>gi|313106823|ref|ZP_07793035.1| RcpA [Pseudomonas aeruginosa 39016]
 gi|310879537|gb|EFQ38131.1| RcpA [Pseudomonas aeruginosa 39016]
          Length = 416

 Score =  243 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 97/424 (22%), Positives = 174/424 (41%), Gaps = 71/424 (16%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           + +  ++ +   +   L++ V ++ + + DP  ADV +   R   + GK  G  ++++  
Sbjct: 36  LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
               + L   + +E                               G V T          
Sbjct: 96  GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ---IGFQHSIT 220
                   G   +   +++++ N        QV   +   EV R  LKQ      +    
Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161

Query: 221 GSSSGPSKSF------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
               G   S       A   G       G      +     + + ++ALE +    TLA 
Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P+L A+SGQSASF +GG+      + +    ++   ++G+ L  TPTV++  RI L++  
Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281

Query: 335 EVSEP--VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE     G+ +G   +P+ RVR+ DT+V L  G + V++GL   +     +  P L  
Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA----MRDLSRPDDHYSVEDDAKAFFFN 446
           IPILGA FR+++ ++++ E+ +  TP LV+P+A    + DL      +     ++ +F  
Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401

Query: 447 RVNK 450
           R   
Sbjct: 402 RGEY 405


>gi|218893396|ref|YP_002442265.1| RcpA [Pseudomonas aeruginosa LESB58]
 gi|254239026|ref|ZP_04932349.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719]
 gi|296391003|ref|ZP_06880478.1| putative type II secretion system protein [Pseudomonas aeruginosa
           PAb1]
 gi|126170957|gb|EAZ56468.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719]
 gi|218773624|emb|CAW29438.1| RcpA [Pseudomonas aeruginosa LESB58]
          Length = 416

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 97/424 (22%), Positives = 174/424 (41%), Gaps = 71/424 (16%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           + +  ++ +   +   L++ V ++ + + DP  ADV +   R   + GK  G  ++++  
Sbjct: 36  LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
               + L   + +E                               G V T          
Sbjct: 96  GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ---IGFQHSIT 220
                   G   +   +++++ N        QV   +   EV R  LKQ      +    
Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161

Query: 221 GSSSGPSKSF------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
               G   S       A   G       G      +     + + ++ALE +    TLA 
Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P+L A+SGQSASF +GG+      + +    ++   ++G+ L  TPTV++  RI L++  
Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281

Query: 335 EVSEP--VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE     G+ +G   +P+ RVR+ DT+V L  G + V++GL   +     +  P L  
Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA----MRDLSRPDDHYSVEDDAKAFFFN 446
           IPILGA FR+++ ++++ E+ +  TP LV+P+A    + DL      +     ++ +F  
Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401

Query: 447 RVNK 450
           R   
Sbjct: 402 RGEY 405


>gi|207724789|ref|YP_002255186.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           MolK2]
 gi|206590014|emb|CAQ36975.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           MolK2]
          Length = 447

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 97/418 (23%), Positives = 176/418 (42%), Gaps = 45/418 (10%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMY 88
            A    +    +  G  + +       +++   ++ + + +P  AD ++   R    ++ 
Sbjct: 4   AALAPGVHAQNMPDGPVLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLL 63

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           +  K  G A++++    G  +   ++ ++ +             D  ++      T VL 
Sbjct: 64  IVAKKPGAASIMVWTQGGTAI-TYNVQVDAEARG------AGSPDLAVQ----GGTAVLT 112

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G VR          L+    + +            +++   +A    V + V + E  + 
Sbjct: 113 GQVRD------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVPGTVQVDVRVVEFSKT 166

Query: 209 ILKQIGFQHSIT------GSSSGPSKSFAADFGGKFVSE-------------GGDFSVKG 249
           +LK+ GF  S T      G+ S  S S A        +                 F++  
Sbjct: 167 VLKEAGFSFSRTRGGFTFGAYSPSSLSQATPSWLSSTASSSSGLTVQSTQPVSTAFNLLL 226

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                     L  +E     R LAEP+L A+SGQSA+F +GG+     V  + G T++  
Sbjct: 227 SSVSKGLFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEY 285

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSG 365
             +G+ L  +PT+LS  RI L++  E S+      I +N   +P+   R+ADTTVEL  G
Sbjct: 286 KPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDG 345

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            + V+ GL+        + +P L  +PI+G+ F+   +N+EE E+ I  TP LV+P+A
Sbjct: 346 ESFVIGGLVSRTTLSNVDKLPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMA 403


>gi|15599500|ref|NP_252994.1| RcpA [Pseudomonas aeruginosa PAO1]
 gi|254244885|ref|ZP_04938207.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192]
 gi|9950526|gb|AAG07692.1|AE004846_9 RcpA [Pseudomonas aeruginosa PAO1]
 gi|126198263|gb|EAZ62326.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192]
          Length = 416

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 96/424 (22%), Positives = 171/424 (40%), Gaps = 71/424 (16%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           + +  ++ +   +   L++ V ++ + + DP  ADV +   R   + GK  G  ++++  
Sbjct: 36  LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
               + L   + +E                               G V T          
Sbjct: 96  GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ---IGFQHSIT 220
                   G   +   +++++ N        QV   +   EV R  LKQ      +    
Sbjct: 117 -------RGAPAFTVGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161

Query: 221 GSSSGPSKSF------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
               G   S       A   G       G      +     + + ++ALE +    TLA 
Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P+L A+SGQSASF +GG+      + +    ++   ++G+ L  TPTV++  RI L++  
Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281

Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE      I      +P+ RVR+ DT+V L  G + V++GL   +     +  P L  
Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA----MRDLSRPDDHYSVEDDAKAFFFN 446
           IPILGA FR+++ ++++ E+ +  TP LV+P+A    + DL      +     ++ +F  
Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401

Query: 447 RVNK 450
           R   
Sbjct: 402 RGEY 405


>gi|107100112|ref|ZP_01364030.1| hypothetical protein PaerPA_01001133 [Pseudomonas aeruginosa PACS2]
          Length = 408

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 97/424 (22%), Positives = 173/424 (40%), Gaps = 71/424 (16%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           + +  ++ +   +   L++ V ++ + + DP  ADV +   R   + GK  G  ++++  
Sbjct: 28  LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 87

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
               + L   + +E                               G V T          
Sbjct: 88  GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 108

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ---IGFQHSIT 220
                   G   +   + +++ N        QV   +   EV R  LKQ      +    
Sbjct: 109 -------RGAPAFTVGAVEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 153

Query: 221 GSSSGPSKSF------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
               G   S       A   G       G      +     + + ++ALE +    TLA 
Sbjct: 154 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 213

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P+L A+SGQSASF +GG+      + +    ++   ++G+ L  TPTV++  RI L++  
Sbjct: 214 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 273

Query: 335 EVSEP--VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE     G+ +G   +P+ RVR+ DT+V L  G + V++GL   +     +  P L  
Sbjct: 274 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 333

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA----MRDLSRPDDHYSVEDDAKAFFFN 446
           IPILGA FR+++ ++++ E+ +  TP LV+P+A    + DL      +     ++ +F  
Sbjct: 334 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 393

Query: 447 RVNK 450
           R   
Sbjct: 394 RGEY 397


>gi|170696786|ref|ZP_02887895.1| type II and III secretion system protein [Burkholderia graminis
           C4D1M]
 gi|170138302|gb|EDT06521.1| type II and III secretion system protein [Burkholderia graminis
           C4D1M]
          Length = 479

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 189/454 (41%), Gaps = 47/454 (10%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVIL 101
           G  +++ I +     L     ++ V + DP+ ADV++        + L GK+ G  NV+L
Sbjct: 29  GGAEQLDIAVGSQQSLAGGHTLRRVAIGDPSVADVLIIKGDKTGGVLLIGKSPGTTNVML 88

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
                   L+  + +    A      +  +      V+++ DT ++ G   T++   RA 
Sbjct: 89  WEQGKDAPLSYVVNVSSPAA------KSLLGPGTPSVKVLGDTALITGAAPTMEAHHRAA 142

Query: 162 ELSETFLSQ---------------------SGRNQYANSSSK--KVMNLLNIAGEDQVTL 198
             +E    Q                      G N  ANS+S   ++ +   IA    V +
Sbjct: 143 AAAEIEAHQRAALGGAGGIGTADGAKSGANGGPNGSANSASNNAQIYDTSTIATRSVVQV 202

Query: 199 KVTIAEVRRDILKQIGFQ-----HSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVK 248
            V + E  R +LKQ+G       +  T  S  PS   +A +G              F++ 
Sbjct: 203 DVRVVEFSRTVLKQVGLNILKQNNGFTFGSFAPSALTSATYGPTPSFSSVAPISSAFNLV 262

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                      L  +E     R LAEPTL A+SGQSASF +GG+     +    G TS+ 
Sbjct: 263 FNSATHGLFADLSLMESNNLARILAEPTLVALSGQSASFLAGGEIPVP-IPQGLGTTSIE 321

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPS 364
              YGV L  TPTVLSP RI L++  E S+      + ++   +P+   R+ DTTVEL  
Sbjct: 322 YKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAITTRRTDTTVELGD 381

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G + V+ GL+  +       +PLL  +P++GA F+   + + + E+ I  TP LV P+A 
Sbjct: 382 GESFVIGGLIDRETISNVAKVPLLGDLPVIGAFFKQLNYQQNDKELVIIVTPHLVSPLAK 441

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
                       E      + + +  +     A 
Sbjct: 442 GATLPATPGEQSEQRNAPVWRSLIGGVAARDAAP 475


>gi|83747917|ref|ZP_00944949.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551]
 gi|207739458|ref|YP_002257851.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           IPO1609]
 gi|83725450|gb|EAP72596.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551]
 gi|206592834|emb|CAQ59740.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           IPO1609]
          Length = 462

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 97/414 (23%), Positives = 175/414 (42%), Gaps = 45/414 (10%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMYLFGK 92
             +    +  G  + +       +++   ++ + + +P  AD ++   R    ++ +  K
Sbjct: 23  PGVHAQSMPDGPVLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLLIVAK 82

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G A++++    G  +   ++ +E +             D  ++      T VL G VR
Sbjct: 83  KPGAASIMVWTQGGTAI-TYNVQVEAEARG------AGSPDLAVQ----GGTAVLTGQVR 131

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                     L+    + +            +++   +A    V + V + E  + +LK+
Sbjct: 132 D------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVPGTVQVDVRVVEFSKTVLKE 185

Query: 213 IGFQHSIT------GSSSGPSKSFAADFGGKFVSE-------------GGDFSVKGVLDR 253
            GF  S T      G+ S  S S A        +                 F++      
Sbjct: 186 AGFSFSRTRGGFTFGAYSPSSLSQATPSWLSSTASSSSGLTVQSTQPVSTAFNLLLSSVS 245

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 L  +E     R LAEP+L A+SGQSA+F +GG+     V  + G T++    +G
Sbjct: 246 KGLFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFG 304

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           + L  +PT+LS  RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V
Sbjct: 305 IGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFV 364

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           + GL+        + +P L  +PI+G+ F+   +N+EE E+ I  TP LV+P+A
Sbjct: 365 IGGLVSRTTLSNVDKLPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMA 418


>gi|319779649|ref|YP_004130562.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella
           equigenitalis MCE9]
 gi|317109673|gb|ADU92419.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella
           equigenitalis MCE9]
          Length = 508

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 171/392 (43%), Gaps = 32/392 (8%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             K I + + ++ +L     +  V V +    +      + + LFG + G   + +    
Sbjct: 32  TPKAIKMEIGQIEVLNF-QSIGRVAVGNSKLLNATTSDDKELVLFGLSEGFTTLQVWDKG 90

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           G       ++   +   L   ++R +    N++  +++D V++ G   +  D ++ V+L+
Sbjct: 91  GSSSSYRVVIESANQNKLLKDIQRILNKIPNVKTSVIADKVIVEGDKLSDFDREKVVQLT 150

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV-TLKVTIAEVRRDILKQIGFQHSIT--- 220
           + +               +++++ +  G D++  + V I E+ R  ++Q+G +   T   
Sbjct: 151 KHY--------------PQIIDMSSQVGWDEMLMIDVQIVELPRQFVQQLGLRWGTTAEG 196

Query: 221 ---------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAI 269
                    GS++  + ++ ++     V   G  +        +      ++A+      
Sbjct: 197 GVQIGATLEGSTAKKAFAYQSNLLANSVGNAGAIANPAFFGGINAFLNASINAMAVEGQA 256

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             LA+P LTA +G +A F +GG+  Y  V     A +V    YGV L+ TP +   G + 
Sbjct: 257 VVLAQPQLTARNGTTAEFLAGGEVPYSMVDDKGQAQTV-FKPYGVSLNITPRIQRDGTVR 315

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +I  EVS     +N    P+ + R+  T     SG  IV++G +  D  Q    +P ++
Sbjct: 316 SKINVEVSTVDTSMNLNGGPALKTRRTSTEFNTKSGEPIVISGFISRDQMQSMTKVPGIA 375

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + PILG LF++  F   ETE+ I   P++VKP
Sbjct: 376 ETPILGELFKSRNFQNNETELVIIVRPYVVKP 407


>gi|94312586|ref|YP_585795.1| pilus assembly protein [Cupriavidus metallidurans CH34]
 gi|93356438|gb|ABF10526.1| pilus assembly protein [Cupriavidus metallidurans CH34]
          Length = 473

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 175/432 (40%), Gaps = 37/432 (8%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH----SPRTMYLFGK 92
                 +    + + +       ++    ++ V V +P  AD ++      P T+ +  +
Sbjct: 44  PPTGSFDTAGSRTLRLLAGAQQEIRPGQALERVAVGNPEVADALLLKHRGGPSTVLVVAR 103

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G  ++ +   D    ++  + ++         +R     +++ +     ++   G   
Sbjct: 104 KPGVTDLKIWSRD-VAPVSYTVRVDA--------VRPDPGGASVDLSSAGASI--SGESP 152

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
               + R +  +   +S +   +        V++   +     V + V + E+ + +LK+
Sbjct: 153 DAPAAARTLMAARAAVSSADGKRAGV-----VVDRSTVPVSGTVQVDVKVVEISKTVLKE 207

Query: 213 IGFQH---------SITGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLDRFSFETVL 260
           IG                 SS    +F    G            F++            L
Sbjct: 208 IGLNFYRDNGGFAFGTFSPSSLTKATFTPGVGTVVDSVSPISSAFNLIAGSVSKGIFANL 267

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
             +E    +R LAEP+L A+SGQSASF +GG+     V  + G T++    +G+ L  +P
Sbjct: 268 SLMEANGLVRVLAEPSLVALSGQSASFLAGGEIPIP-VPQALGTTTIQYKPFGIGLTVSP 326

Query: 321 TVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TV+S  RI L++  E S+        +N   +P+   R+ADTT+EL  G + V+ GL+  
Sbjct: 327 TVMSRERIALKVAPEASDLDPSRGIVLNGATVPAIVTRRADTTIELGDGESFVIGGLVSR 386

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           +       +P L  +P++G+ F+N  F++E+ E+ I  TP L+KP+A    +        
Sbjct: 387 NTVSNVSKVPFLGDLPVIGSFFKNLNFHQEDRELMIVVTPHLIKPLAKDSPAAAGASQDG 446

Query: 437 EDDAKAFFFNRV 448
              A    + R 
Sbjct: 447 RTSANPNVWGRY 458


>gi|307730006|ref|YP_003907230.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
 gi|307584541|gb|ADN57939.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
          Length = 490

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 107/447 (23%), Positives = 182/447 (40%), Gaps = 67/447 (14%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKN 93
            + +    G  +++ + +     L     ++ V + DP+ ADV++        + L GK+
Sbjct: 12  ASPAGFAAGGAQQLELLVGSQQSLASGHTLRRVAIGDPSVADVLIIKGDKTGGVLLVGKS 71

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  NV+L        L+  + +    A      +  +      V ++ D+ ++ G   T
Sbjct: 72  PGSTNVMLWEQGKDAPLSYVVNVSSPAA------KSLLGPGTPSVRVLGDSALISGSAPT 125

Query: 154 IQDSQRAVE-------------------------------------------LSETFLSQ 170
           ++  QRAV                                             + +  + 
Sbjct: 126 MEAHQRAVAAAAIEARQRATLGTVANSAANSAAAGASVGRGGRGTAVSGMSGAAGSDATN 185

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-----HSITGSSSG 225
            G +  +     ++ +   +A    V + V + E  R +LKQ+G       +  T  S  
Sbjct: 186 GGASFASAMGDAQIYDTSTVATRSVVQVDVRVVEFSRTVLKQVGLNILKQNNGFTFGSFA 245

Query: 226 PSKSFAADFG-----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           PS   +A +G              F++            L  +E     R LAEPTL A+
Sbjct: 246 PSALSSATYGPTPSFNSVAPISSAFNLVFNSATRGLFADLSLMESNNLARILAEPTLVAL 305

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-- 338
           SGQSASF +GG+     +    G TS+    YGV L  TPTVLSP RI L++  E S+  
Sbjct: 306 SGQSASFLAGGEIPVP-IPQGLGTTSIEYKPYGVGLTLTPTVLSPQRIALKVAPEASQLD 364

Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
               + ++   +P+   R+ DTTVEL  G + V+ GL+  +       +PLL  +P++GA
Sbjct: 365 FANAVTISGVSVPAITTRRTDTTVELGDGESFVIGGLIDRETISNVAKVPLLGDLPVIGA 424

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVA 423
            F+   + + + E+ I  TP LV P+A
Sbjct: 425 FFKQLNYQQNDKELVIIVTPHLVSPLA 451


>gi|239817412|ref|YP_002946322.1| type II and III secretion system protein [Variovorax paradoxus
           S110]
 gi|239803989|gb|ACS21056.1| type II and III secretion system protein [Variovorax paradoxus
           S110]
          Length = 457

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 106/437 (24%), Positives = 175/437 (40%), Gaps = 64/437 (14%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
            S+         A       A+A  +          + + +       L +   ++ + +
Sbjct: 21  FSLIALCVLALGAWPIATNAADATPVRPQ-----PQRPLILNAGTQQELLIEKGIERMAI 75

Query: 72  SDPTKADVVVHSPR------TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           +D   A + V           + + GK  G+  +++            I + R       
Sbjct: 76  ADEAVAAITVTRKGPNSPAARLIITGKAAGRTTLMIWEKGNSAATTYSIEVRR------- 128

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
                             +  L G + ++   Q+A E +      +G  + A    + V+
Sbjct: 129 -----------------RSATLAGTMDSVAAHQQARETA-----MAGMPEKAELIDRSVV 166

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQ------------IGFQHSITGSSSGPSKSFAAD 233
           N+      + V ++V + E  R +LKQ             GF   + G SS  S +FA++
Sbjct: 167 NV----RSNTVQVEVKVVEFNRSVLKQAGLNIFSTRANSNGFSFGVFGPSSLGSTTFASN 222

Query: 234 ---FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
               G         FS+     +      +  LE     R LAEPTL A+SGQSASF +G
Sbjct: 223 GSISGEYHNPLAQAFSLLFNFGKAGVGLNVGFLEGNGMARVLAEPTLVAMSGQSASFLAG 282

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346
           G+          G TS+    +G+ L  TPTVLS  RI L++  E S+      + +   
Sbjct: 283 GELPVP-APQGLGTTSIEYKPFGIGLTLTPTVLSNDRIVLKVAPEASDLDYTNSLSIGGV 341

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P+   R+ADTTVEL  G + ++ GL+        + +PLL  +PILG  FR +++   
Sbjct: 342 AVPAITTRRADTTVELGDGESFIIGGLVSRTTTSNVDKVPLLGDLPILGTFFRQNKYQMS 401

Query: 407 ETEIFIAATPFLVKPVA 423
           E E+ I  TP LVKP+A
Sbjct: 402 EKELVILVTPHLVKPIA 418


>gi|319788661|ref|YP_004148136.1| type II and III secretion system protein [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317467173|gb|ADV28905.1| type II and III secretion system protein [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 502

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 98/421 (23%), Positives = 172/421 (40%), Gaps = 37/421 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++   +  + +VP  ++ V V D     V       +   G   G+ NV L   +G Q 
Sbjct: 94  LTLHAGEAAVRRVPAALRRVAVGDGEILSVHTVGRNELVFIGTQPGETNVHLWLGNGTQ- 152

Query: 110 LNLDILIERDIA-HLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
             + + +    +  +  T+R  + +   + V  V   VV+ G       S +   L + +
Sbjct: 153 RTVAVNVTGSRSDGVAATVRELLGNHPDVAVRAVGSNVVISGGELDAATSAKIAALQKLY 212

Query: 168 LSQSGRNQYANSSSKKVMNLLN---IAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGS 222
                          +V+N      +     V + VTI E  +D ++ +G +   +I+G 
Sbjct: 213 --------------PQVLNFAGSDPVGMRPMVRMDVTIMEFNKDAVEDLGIRWDSTISGP 258

Query: 223 SSGPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVL----HALERATA 268
             G  +    +   + + E               + G    F   T +    + L     
Sbjct: 259 IGGLIRDVTTNDYFRVLPEDNRTFDEIREQLPTRLPGPQGYFGIATTIGSQINLLMSRGK 318

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
              LAEP L+A SG +A+F  GG+     + S  G T +   +YG+ L+ +P V S   +
Sbjct: 319 AWVLAEPKLSARSGSNATFLVGGEVPI-VIPSVLGQTQIEYKEYGIRLNISPNVNSAREV 377

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
              I  EVS     V    +P +  R+A+T + + +G TIV++GLL  +  +  +  P+L
Sbjct: 378 ATSIMAEVSRIDPSVAVQGVPGFLTRRAETEINVLAGQTIVISGLLDREAAKSVDKFPIL 437

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IPILG LFR+  F    TE+ I  TP +V P +  +L        +E   ++    R 
Sbjct: 438 GDIPILGRLFRSDGFRGNRTELVIFVTPHIVTPDSPENLEELHRGDRIEQSLESEISPRQ 497

Query: 449 N 449
           N
Sbjct: 498 N 498


>gi|215433395|gb|ACJ66663.1| outer bacterial membrane secretin family protein [Myxococcus fulvus
           HW-1]
          Length = 482

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 106/445 (23%), Positives = 187/445 (42%), Gaps = 67/445 (15%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +S+G+    ++ +P  +  V + DP+ ADV       + + G+  G+  +++    G
Sbjct: 28  GTNVSLGVGSQKVITIPG-LSRVALGDPSIADVKTLGSGQLLITGQAEGKTTLLVWKSSG 86

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-- 163
           +++  L  + ++D   +   ++R + +   + V MV D + L G   T QD+ R  ++  
Sbjct: 87  QRVSYLVAVRKQDPNEVITEIKRLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVG 146

Query: 164 -----------------------------------------SETFLSQSGRNQY------ 176
                                                    +  FL  S  +Q       
Sbjct: 147 LYPNVKSFVKIAPNAKKLVAQNLNAAFQKAGLKNVQANVVGATIFLEGSVESQQDLQKAE 206

Query: 177 --ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAA 232
               +  +KV NLL +  +  +  +V   E+RR+   + G ++   ITG++S  +     
Sbjct: 207 LITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYPTDITGTASAIANISQE 266

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            F G F S     ++    D FSF    +        R LA+P L   SG+ A F +GG+
Sbjct: 267 LFPGTFGSGVSTLALNANSD-FSFGFQGN----DGYGRLLAQPKLVCASGEKAEFLAGGE 321

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGD 347
                ++      +V    YGV+L+  PT    G I   I+ E SE    V      +  
Sbjct: 322 VPIPLIT--NNQFTVEFKKYGVILNLRPTADRNGNIQTEIEAEASEIDTSVAVSFGGSSS 379

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P +R R+  T V +  G TIVL+G+   D Q+    +P L  IPI+G LF++  F+  +
Sbjct: 380 IPGFRTRRVKTNVTVRHGETIVLSGVFSHDEQKSVSKLPGLGHIPIVGELFKSRGFDSTK 439

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDD 432
            E+ I  TP +V P + +  +  +D
Sbjct: 440 RELVIFVTPRIVNPDSDKVRTIIED 464


>gi|317403496|gb|EFV84000.1| hypothetical protein HMPREF0005_03138 [Achromobacter xylosoxidans
           C54]
          Length = 458

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 114/433 (26%), Positives = 184/433 (42%), Gaps = 35/433 (8%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILI 102
           + I++ +     L +      + + DP  ADV V +       ++ L+GK  G   + + 
Sbjct: 40  RDIAVAVKGQQALMLDGAPVRIAIGDPDVADVKVLAASGKRQASVLLYGKKAGTTQLQIW 99

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
                      + +  ++   +  +          V++  +  V+ G   +    Q    
Sbjct: 100 TGANAAPQVWTVRVAGNV---QQVMAGRGVAGGANVDVAGERAVVSGQAESPLTHQ---- 152

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
                   S     A    K V+++        V ++V + EV R ++KQ G   +    
Sbjct: 153 -------ASVAAAGAAVGDKNVVDVSTAGSGGVVQVEVKVVEVSRSVMKQAGISFAGRSG 205

Query: 223 SSGPSKSFAAD-FGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLT 278
             G + S   D F        G     G     D   F   L  L+     R LAEPTL 
Sbjct: 206 PWGSTNSITPDGFPAPLGFNKGAALASGFSLFYDSNDFSARLRLLQNNGMARVLAEPTLV 265

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           A++GQSASF +GG+          G T+VT   +G+ L  TPTVLS  RI L++  E SE
Sbjct: 266 ALTGQSASFLAGGELPIPEA-GGLGTTTVTFKPFGIGLTVTPTVLSRERIALKVAPEASE 324

Query: 339 --------PVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                      G N+   +P+ R R+ADTTVEL  G + V++GL+    + L   +P+L 
Sbjct: 325 LDYSNAIAVSNGTNSTTLIPALRTRRADTTVELGDGESFVVSGLVSRQTRALVNKVPMLG 384

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
            +PI+G+ FR+  + +E+TE+ I  TP LV+P+A R ++ P      E  A   F     
Sbjct: 385 DLPIIGSFFRSVDYTQEDTELVIVVTPRLVRPIA-RGVTLPLPGAKQE-AADTAFNAWGY 442

Query: 450 KIYGPKEASEVEG 462
            + GP    ++ G
Sbjct: 443 YLMGPVGGQQMPG 455


>gi|78486068|ref|YP_391993.1| type II and III secretion system protein [Thiomicrospira crunogena
           XCL-2]
 gi|78364354|gb|ABB42319.1| Flp (type IV) pilus assembly protein CpaC homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 520

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 102/464 (21%), Positives = 201/464 (43%), Gaps = 69/464 (14%)

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD--GKQMLNLD 113
           +  I++    ++  LV++P  A++ V + + + + GK  G+  +I+       +   ++ 
Sbjct: 37  ESQIVKFDYPIKRALVANPDLANLKVLNSKELLVSGKQAGKTELIIWYKKAPNQVGRHIV 96

Query: 114 ILIERDIA-------HLEMTLRRFIADSNIR-----------------VEMVSDTVVLHG 149
           + +  D +        +   +R+   D  ++                 ++ V + +    
Sbjct: 97  LKVAPDASRREEIEQTVSTLIRQLDPDKKVKFVLKNIWIESNSSVRRELDNVGNQIDNDS 156

Query: 150 MVRT--------IQDSQRAVEL----------------SETFLSQSGRNQYANSSSKKVM 185
            +++        +Q++Q+A  L                      +       ++    V+
Sbjct: 157 TIKSKGNKNQDILQETQKAGSLNIKPVAGNYMVLLTGEVPNKARKKRIQSVISALGLSVV 216

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGF-------QHSITGSSSGPSKSF------AA 232
           N++++ G+ Q+ L V +AEV +    + G        +  I    +  +++         
Sbjct: 217 NMIDVTGKSQIKLSVRVAEVVKGNPFKSGVAIRDKKDRFGIFPPGNLGTQALFSLNNSPG 276

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           D  G        F +    +  S   VL  LE     R LA+P L   SG++A+F  GG+
Sbjct: 277 DTAGISFPHPDAFQIGFNPENGSIFGVLSLLEGHNLARVLAKPELIVQSGETATFLVGGE 336

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDM 348
                V+ +    +V+  +YGV L F+P V   G I + ++ EVS+         N   +
Sbjct: 337 VAIP-VAQNADTITVSYKEYGVRLRFSPIVTESGDIQMTVEPEVSDIDAANGTQTNNIII 395

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS+R RK  TT+ L  G + ++ GLL+D+I+     +P+L  IPILGALFR++ +  +++
Sbjct: 396 PSFRSRKTSTTITLAPGQSFIIGGLLQDNIRSQVSKVPVLGDIPILGALFRSNSYVHDKS 455

Query: 409 EIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           E+ I  TP  V PV A + +S P ++     +  AFF  +V ++
Sbjct: 456 ELAIMVTPTFVAPVDAGKKVSLPGENLKRPSNMDAFFLGKVAEV 499


>gi|149927033|ref|ZP_01915291.1| type II/III secretion system protein [Limnobacter sp. MED105]
 gi|149824254|gb|EDM83474.1| type II/III secretion system protein [Limnobacter sp. MED105]
          Length = 473

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 105/452 (23%), Positives = 182/452 (40%), Gaps = 58/452 (12%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           ++ +      +    L S   +V + P    + A  +            +++      ++
Sbjct: 8   LKSVVAAISLIACAGLISPQVAVGQTPAAPSSAAPFV------------LTLSTGFQKVI 55

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRT-------MYLFGKNVGQANVILIGHDGKQMLNLD 113
            +P     V + DPT A V V  P         + + G   G  ++++          + 
Sbjct: 56  SLPGIPARVSIGDPTIASVTVLKPTDRGGKNAGVLVTGLKTGSTSLLIWDRGASMARVIT 115

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           + +    A    TL+      ++ +E     + L G    +   Q+A E        S  
Sbjct: 116 VSVTGKAAETISTLK------DLNLETEGQVLKLSGSTPNVSTYQQARE--------SLI 161

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-- 231
              ++    ++++   I     V + V + E  R  L+++G   +   +  G + S A  
Sbjct: 162 KPGSDGKPAELIDQATIQTSGTVQVDVKVVEFTRSELQRLGINLTGQVNGGGFTYSIAGP 221

Query: 232 ---ADFGGKFVSEGGDFSVKGVLDRFSFETV---------------LHALERATAIRTLA 273
              +  GG   +    F+  G +       +               L+ L+     + LA
Sbjct: 222 ASVSGSGGVSNAFSLAFNGAGCVGEAVIGALNPTPVGPRTCDLVSGLNILQADGYAKVLA 281

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           EP+L A SGQ ASF +GG+     V S  G   +    +GV L FTPT+LS   I LR+ 
Sbjct: 282 EPSLIAQSGQDASFLAGGEIPIP-VPSGNGTIGIEYKKFGVGLSFTPTILSNKTIALRVS 340

Query: 334 TEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            EVS+        +    +P+   R+A TTVEL    + V+ GL+  +I      +P LS
Sbjct: 341 PEVSDLDFSRGTSIQGVLVPAILTRRASTTVELGENQSFVIGGLISRNIIANANRVPWLS 400

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +IPILGA F+ + ++RE+ E+ I  TP  VKP
Sbjct: 401 EIPILGAFFKGNTYSREDKELLIIVTPRFVKP 432


>gi|77456876|ref|YP_346381.1| type II and III secretion system protein [Pseudomonas fluorescens
           Pf0-1]
 gi|77380879|gb|ABA72392.1| putative Flp pilus assembly protein, secretin [Pseudomonas
           fluorescens Pf0-1]
          Length = 422

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 112/452 (24%), Positives = 188/452 (41%), Gaps = 48/452 (10%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
           R  FT +  +L  S  SVA +     A      ++ +       + +G      +Q PV 
Sbjct: 2   RKRFTPLFHWLQFSLLSVASIGSAAAATGNCAALAPLPA----VLEVGEGLQQAVQSPVA 57

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           +  V V DP  ADV V   + + L G   G   +++            + +       + 
Sbjct: 58  ITRVAVGDPKIADVRVTGDQGVLLTGVGPGATTLMIWTACASTPRQSMVFV-------QG 110

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
                +  + +      +      +   +Q   R VE+S T L ++G + Y   S+  + 
Sbjct: 111 KASAAMTAAALPSSSEPN------LPSQVQTDIRFVEVSRTKLKEAGTSIYGKGSNNFLF 164

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
                     VT  V                 +I    + PS   A D           F
Sbjct: 165 GAPGTVPNTGVTPGVVPL-------------LNIDPRIAAPSIPLANDM----------F 201

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           ++        F  +++ALE +    TLA P+L A+SGQSASF +GG+      S+++ + 
Sbjct: 202 NIVWGGGSSKFLGIVNALEGSGFAYTLARPSLVALSGQSASFLAGGEVPIPVPSANSNSY 261

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVE 361
           S+   ++G+ L  TPTV+S  RI L++  EVS       + +    +P++ +R+ DT++ 
Sbjct: 262 SIEYKEFGIRLTLTPTVVSNDRIALKVAPEVSELDYNNGVTIGGTKVPAFTIRRTDTSIS 321

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L  G + V++GL+           P L  IP+LGA FRNS  NREE E+ +  TP LV+P
Sbjct: 322 LADGESFVISGLISTRNASEVNKFPGLGDIPVLGAFFRNSSINREERELLMIVTPHLVQP 381

Query: 422 VAMRD--LSRPDDHYS--VEDDAKAFFFNRVN 449
           +A+     S P +       +  + +F    N
Sbjct: 382 LAVNAPLPSLPGEKLRNYDPNWYRLYFLENGN 413


>gi|190574779|ref|YP_001972624.1| putative exported fimbriae assembly protein [Stenotrophomonas
           maltophilia K279a]
 gi|190012701|emb|CAQ46329.1| putative exported fimbriae assembly protein [Stenotrophomonas
           maltophilia K279a]
          Length = 451

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 108/424 (25%), Positives = 177/424 (41%), Gaps = 44/424 (10%)

Query: 62  VPVDVQDVLVSDPTKADVVVH-SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           +P D++ V ++DP  AD+V+    R   L GK  G   ++L      +   L + ++  +
Sbjct: 46  LPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHRKQAEPQRLQVRVQSAV 105

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
                        + +      +  +L G   ++    +  + +   L + G    A++ 
Sbjct: 106 QG-----AADAGSNGLVFTQQDNQGLLQGSTDSVLSHMQEQKTAAMALGKDGLLADASTV 160

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAA 232
           S   +  + +   +            +  LKQIG        S         G       
Sbjct: 161 SSGGVVQVEVKVVE----------FNKTALKQIGISFQNRNGSFAYGFARPGGQLPGNTG 210

Query: 233 DFGGKFVSEGGDFSVKGVLDRF---------SFETVLHALERATAIRTLAEPTLTAISGQ 283
              G      G+ +   +   F          +   +  L+     R LAEPTL A+SGQ
Sbjct: 211 ILPGMKEGNSGNEAESPISSAFRLVFGSTKGLWNADVDLLQSNGMARVLAEPTLVALSGQ 270

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339
           SASF +GG+          G T++T   +G+ L  TPTVL+P RI L++  E S+     
Sbjct: 271 SASFLAGGELPILE-PQGLGTTTITYKPFGIGLTVTPTVLAPNRIALKVAPEASDLDYSN 329

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            I +N   +PS   R+ADTTVEL  G + V+ GL+  ++      IPLL  +PI+G+ FR
Sbjct: 330 AIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSNVGKIPLLGDLPIIGSFFR 389

Query: 400 NSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           N  + R++ E+ I  TP LV+P+A   +L  P +      +AK         + GP    
Sbjct: 390 NFDYKRQDKELVIIVTPRLVQPLARNTELPLPGER-----EAKPHMPEWGAWLLGPISQD 444

Query: 459 EVEG 462
            V G
Sbjct: 445 PVPG 448


>gi|329912918|ref|ZP_08275837.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480]
 gi|327545493|gb|EGF30693.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480]
          Length = 608

 Score =  236 bits (602), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 99/428 (23%), Positives = 173/428 (40%), Gaps = 44/428 (10%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
           P +     A I+  + + G   +I + + +  +   P  V  + V +           + 
Sbjct: 95  PQVASRPYAPISPQNDQ-GMIPEIEMFVGESRVFPTPG-VARIAVGNGQIMSAAALDEKE 152

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTV 145
           + +F   VG +++ +   DG+       ++  D   +   +  F+   S  R  ++ D V
Sbjct: 153 VIVFANGVGTSSLFVWNADGRYQRVKVSIVPGDTTRIARDVTAFLKSMSGTRTSIIGDKV 212

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG-EDQVTLKVTIAE 204
           ++ G   +  +  +   L + +               +++N  N  G E  V L V + E
Sbjct: 213 IIEGDNLSDVELAKIDMLEKRY--------------PQIINFTNQLGWEPMVMLDVKVVE 258

Query: 205 VRRDILKQIGFQHSITG-----------------------SSSGPSKSFAADFGGKFVSE 241
              + L+ IG +    G                        S+  +   + +  G  V  
Sbjct: 259 FPTNELRDIGLKWGSVGGAAVGAIWSPGRRGTDGPYQVNIQSANAAPITSPEGSGSPVRV 318

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  +V   L+       L+ L +      LA+P L+A SG  ASF +GG+  Y   +  
Sbjct: 319 PGGLNVLSALN-LGLNAQLNLLAQQGKASLLAQPQLSARSGTKASFLAGGEFPYSVAT-- 375

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
               +V    YG+ L   P V   G I   I  EVS+    V+    P+ + RK  T   
Sbjct: 376 INGVTVQFKPYGIKLDILPKVDRNGVIRATIDAEVSKIDASVSTVVGPALQTRKTKTEFN 435

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + +G TIVLAG+L+ D     + +PLL  +P+LGALFR+ RF  +ETE+ +  TP +V  
Sbjct: 436 VLAGDTIVLAGMLQADNSTSIDKVPLLGDVPVLGALFRSKRFENKETELVVFVTPTIVDS 495

Query: 422 VAMRDLSR 429
            +   + R
Sbjct: 496 RSPALIER 503


>gi|187478776|ref|YP_786800.1| pilus assembly protein [Bordetella avium 197N]
 gi|115423362|emb|CAJ49896.1| putative pilus assembly protein [Bordetella avium 197N]
          Length = 426

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 98/390 (25%), Positives = 161/390 (41%), Gaps = 34/390 (8%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           + +        ++ + + +  +L  P  V  + V             + + LF +  G +
Sbjct: 21  SPAYSAARTQHELVLEVGETRVLDAPG-VTRIAVGSGQVVQAQAVDGKEVILFARKEGVS 79

Query: 98  NVILI-GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQ 155
           +V +  G  G +   L ++      H+   + + +A    +R+ +V   +V+ G      
Sbjct: 80  SVHVWRGQSGVRAYALRVM-PAGFGHIRAEVEQLLAAMPALRLSVVGHHLVIEGSGLPDH 138

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLKVTIAEVRRDILKQIG 214
           D QR   L++ +               +V++L  ++  E  V L V + E+ R  L ++G
Sbjct: 139 DKQRISALAQRY--------------PEVLDLTGDVGWEQMVLLDVQVVELPRARLTELG 184

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
              S+    S P +S A  +G    S                   L AL +      LA 
Sbjct: 185 MHWSMGAEGSHPVRSHAGVWGSLQWSGAA------------IGARLQALAQRGEAVFLAR 232

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L A SG +ASF +GG+  Y+   S     S     YGV L  TP +   G I   I+ 
Sbjct: 233 PRLLARSGSAASFLAGGEVPYRGAESE---ASTVFKPYGVSLKITPRIDPRGTIRSHIEV 289

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           E S     +     P+ R R+A+T   +PSG T+VL G L  ++     G+P LS IP+L
Sbjct: 290 ESSSIDPTLTVPAGPAMRTRRAETEFNVPSGQTLVLGGFLGRELSSETRGVPWLSDIPVL 349

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G LF   R    +TE+ I  TP +V+P   
Sbjct: 350 GLLFGERRQQNRDTELAIFVTPTIVRPDDP 379


>gi|108762925|ref|YP_631309.1| outer membrane secretin family protein [Myxococcus xanthus DK 1622]
 gi|108466805|gb|ABF91990.1| protein transporter, outer bacterial membrane secretin (secretin)
           family [Myxococcus xanthus DK 1622]
          Length = 482

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 105/445 (23%), Positives = 187/445 (42%), Gaps = 67/445 (15%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  +S+G+    ++ +P  +  V + DP+ A+V       + + G+  G+  +++    G
Sbjct: 28  GTTVSLGVGSQKVITIPG-LSRVALGDPSVAEVKTLGSGQLLITGQAEGKTTLLVWKSSG 86

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-- 163
           +++  L  + ++D   +   ++R + +   + V MV D + L G   T QD+ R  ++  
Sbjct: 87  QRVSYLVAVRKQDPNEVISEIKRLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVG 146

Query: 164 -----------------------------------------SETFLSQSGRNQY------ 176
                                                    +  FL  S  +Q       
Sbjct: 147 LYPNVKSFVKIAPNAKKLVAQNLNAAFQKAGLKNVQANVVGATIFLEGSVESQQDLQKAE 206

Query: 177 --ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAA 232
               +  +KV NLL +  +  +  +V   E+RR+   + G ++   ITG+++  +     
Sbjct: 207 LITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYPTDITGTATAIASISQE 266

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            F G F S     ++    D FSF    +        R LA+P L   SG+ A F +GG+
Sbjct: 267 LFPGTFGSGVSTLTLNANAD-FSFGFQGN----DGYGRLLAQPKLVCASGEKAEFLAGGE 321

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGD 347
                ++      +V    YGV+L+  PT    G I   I+ E SE    V      +  
Sbjct: 322 VPIPLIT--NNQFTVEFKKYGVILNLRPTADRNGNIQTEIEAEASEIDTSVAVSFGGSAS 379

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P +R RK  T V +  G TIVL+G+   D Q+    +P L  IPI+G LF++  F+  +
Sbjct: 380 IPGFRTRKVKTNVTVRHGETIVLSGVFSHDEQKSVSKLPGLGHIPIIGELFKSRGFDSTK 439

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDD 432
            E+ I  TP +V P + +  +  +D
Sbjct: 440 RELVIFVTPRIVNPDSDKVRTIIED 464


>gi|127511579|ref|YP_001092776.1| type II and III secretion system protein [Shewanella loihica PV-4]
 gi|126636874|gb|ABO22517.1| type II and III secretion system protein [Shewanella loihica PV-4]
          Length = 436

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 97/399 (24%), Positives = 172/399 (43%), Gaps = 35/399 (8%)

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAH 122
            +V+ ++V +       V   + + L G+  G  ++ L   DGK + L+L +  +  +  
Sbjct: 41  ANVERIVVGNGKVLSAKVVDNKGVLLIGEAPGNTDLQLWQKDGKLIKLSLTVTPDNSLRT 100

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ--RAVELSETFLSQSGRNQYANSS 180
             M  +   A  ++ V      +++ G     Q  Q  + +E     +S     ++A + 
Sbjct: 101 TTMVKKMLAAFPSLTVSESDGLIIVQGEADLAQKEQLEKILEGDPNVVSLVKYLKFAKTM 160

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKF 238
           S              V ++V I E  +  L  +G +   S+ G + G +K F A+     
Sbjct: 161 SP------------MVKMQVKIVEFNKSTLNNVGIKWETSMAGPAYGVAKGFTANPIFNV 208

Query: 239 VSEG--------GDFSVKGVLDRFSFETV---------LHALERATAIRTLAEPTLTAIS 281
            S G              GVLD   + ++         +  L      R LA+P LT  S
Sbjct: 209 ASPGQYTEAITKSITENIGVLDTRGWSSLGIVSGIGSQIQLLSEKGDARLLAQPNLTTRS 268

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           G+SASF +GG+   ++VS   GA  V   +YG+ L   P V     I  R+  EVS    
Sbjct: 269 GESASFLAGGEFPIRSVSG-LGAVDVEYKEYGIKLDIEPVVDEQQNIVSRVMAEVSSIDP 327

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            V    +P    R+ ++ + + +  TIV++GL+  ++ ++    PLL  IPILG LF++ 
Sbjct: 328 SVAVDGVPGMLTRRTESVINVKNNETIVISGLVNSEMSKIVNKFPLLGDIPILGELFKSR 387

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
            F  ++TE+ I  TP +V P      ++ +    + ++A
Sbjct: 388 DFKDDKTELVIFVTPVVVYPGQEEHDTQLNRGLEMAEEA 426


>gi|149173675|ref|ZP_01852304.1| probable type II secretion system protein [Planctomyces maris DSM
           8797]
 gi|148847205|gb|EDL61539.1| probable type II secretion system protein [Planctomyces maris DSM
           8797]
          Length = 744

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 108/477 (22%), Positives = 199/477 (41%), Gaps = 52/477 (10%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
            +        G   ++ I + +  ++     ++   ++DP+  + V +SP  + + G  +
Sbjct: 134 PLPTQIRSTPGIFDEMEIIIRRSQLIITNSRIRRYAIADPSIIEFVTYSPTEISIVGLEL 193

Query: 95  GQANVILIGHDGKQMLNLDILIERDIA----------HLEMTLRRFIADSNIRVEMVSDT 144
           G   + L        +   +   +D +           LE  +     +S + +  +S  
Sbjct: 194 GTTTLTLWFEGDDTPITYLVHTIQDPSLEGQRRIDYGKLERKIAVLFPNSKVYLIPLSRK 253

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA--------------------------- 177
           +++ G      ++   + +    +     N                              
Sbjct: 254 IIVKGEASDATEAANILSVIRGEVINYEGNLGGPQPYGAGGAYGGGYGAAGGVLDGIGNN 313

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
             +S  ++N+L I GE QV + VTIA++ R +++Q+G   S+     G  +   +  GG 
Sbjct: 314 GYASSFIVNMLEIPGEFQVMIHVTIAQMNRTMMRQLGVDLSVLFD--GGRQFLGSSMGGV 371

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +      + G+ +      +++AL +    + +A PTLT +SG SASF +GG+    T
Sbjct: 372 PST------LTGIFEAGEVNVLINALAQNGTTKIMARPTLTVLSGHSASFLAGGEFAVPT 425

Query: 298 VSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           +    GA  TS T   +G  +  TP V+    I +RI  E S+   G +   +P    R+
Sbjct: 426 IVGVGGAQGTSTTFRGFGTSIVVTPIVIDKDLIRMRIVPEYSQINDGNSVQGIPGLNSRR 485

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAA 414
           A TTVEL  G TIVLAGL   D       IP L +IP++G  LF + + ++ E+E+ I  
Sbjct: 486 AQTTVELREGQTIVLAGLFGHDSSTGVTRIPWLGEIPLVGSYLFSSKQSSQGESELLITV 545

Query: 415 TPFLVKPVAMRDLSR-PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
           TP LV+P+   ++   P    +V  D + +   +     G  + +  + Q Y    G
Sbjct: 546 TPQLVRPMEEDEVPPYPGFEVTVPQDKELY---KYAMTEGAPDTAVYQLQPYGRGAG 599


>gi|168703130|ref|ZP_02735407.1| putative outer membrane channel for pilus assembly CpaC [Gemmata
           obscuriglobus UQM 2246]
          Length = 577

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 110/473 (23%), Positives = 185/473 (39%), Gaps = 31/473 (6%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII-- 59
           R  +R     + + L  +  +     P     AA    +D++      + +G  +     
Sbjct: 5   RTSRRFLPWALVVTLGLAAVTTGAGQPPDPKGAAP---ADLDKSGAVVVPLGGLRSFDPK 61

Query: 60  LQVPVDVQDVLVSDPTKADVVVH--SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
           L+  V   D+L S             P  + L GK  G + + ++  D    L  D++++
Sbjct: 62  LKGGVPPTDILNSREDVLGARPDPNDPTKLLLTGKTAGLSQLTIVQKD-APPLKFDVVVK 120

Query: 118 RDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            D+A L   +R  +  +++ VE  + + +VL G V +  D+     L+ + +  +  N  
Sbjct: 121 PDLAQLRKLIRDTVPTASVTVEPGLGNVIVLSGYVTSPSDADIVQRLANSAVGGANAN-- 178

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                  V+N + I G  QV + V +A V R+ L+  GF  ++ G  S    S  +   G
Sbjct: 179 -------VINAVQIGGVQQVQIDVVVASVDRNQLRSRGFDFALPGRGSFSFSSLVSGLLG 231

Query: 237 KFVSEGGDFSVKGVLDRFSFETV-------LHALERATAIRTLAEPTLTAISGQSASFTS 289
              + G   +       F F  V       L AL      + LAEP +   +G+ A F +
Sbjct: 232 VQSAGGVTTATFSPDSNFQFAVVPNRFFGALRALRTEGVAKFLAEPRVVTQTGRPAFFRA 291

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNA 345
           GGQ    + SS      VT   +G  L   P V   G I L I   ++    G    V  
Sbjct: 292 GGQQAIISGSSGITGPGVTLQPFGTELTVVPIVYGNGMIWLDINPRITAVSQGLGITVGG 351

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P +  +   +TV L SG T  + GL+++ +      +P+L  +P  G  F       
Sbjct: 352 SSSPGFTEQSVQSTVLLESGQTFAIGGLIQNSVNASASKVPVLGDLPFAGTYFSRVEHTV 411

Query: 406 EETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
            E+E+ I  TP LV P+         P       DD + F  N +    G ++
Sbjct: 412 RESELVILVTPRLVHPMDQCQGPKRLPGQETRSPDDYELFLENVLEVPRGQRK 464


>gi|319795779|ref|YP_004157419.1| type II and iii secretion system protein [Variovorax paradoxus EPS]
 gi|315598242|gb|ADU39308.1| type II and III secretion system protein [Variovorax paradoxus EPS]
          Length = 462

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 105/423 (24%), Positives = 175/423 (41%), Gaps = 59/423 (13%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
            P I  A +   N +         + +G      L +   +  + ++D T A V +    
Sbjct: 35  APGIWPAASVAANATPPPRQSQIPLVVGAGTQQELLIQKGIDRLAIADETVAGVTITRKT 94

Query: 86  ------TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
                  + + GK  G+  +++            + + R  +                  
Sbjct: 95  PNSPAARLIITGKTAGRTTLMVWEKGSASATTYALEVRRRAST----------------- 137

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
                  L G + ++ + Q+A + +      +G         + ++N+      + V ++
Sbjct: 138 -------LTGTLDSMVEHQQARDAAS-----AGAGDKTPLVDRSIVNV----RSNTVQVE 181

Query: 200 VTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG--------- 249
           V + E  R +LKQ G    S   +S+G S    +  G K  +   D S+ G         
Sbjct: 182 VKVVEFNRSVLKQAGLNIFSTRANSNGFSFGVFSPAGLKSSTFASDGSINGEYNNPLAQA 241

Query: 250 -----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                   +      +  LE     R LAEPTL A+SGQSASF SGG+     V    G 
Sbjct: 242 FSLLFNFGKAGIGLNVGFLEGNGMARVLAEPTLVAMSGQSASFLSGGELPVP-VPQGLGT 300

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360
           TS+    +G+ L  TPTVLS  RI L++  E S+      + +N   +P+   R+ADTTV
Sbjct: 301 TSIEYKPFGIGLTLTPTVLSNDRIVLKVAPEASDLDYTNSLSINGIAVPAISTRRADTTV 360

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL  G + ++ GL+        + +PLL  +PILG+ F+ +++   E E+ I  TP LVK
Sbjct: 361 ELGDGESFIIGGLVSRTTTSNADKVPLLGDLPILGSFFKQNKYQMSEKELVILVTPHLVK 420

Query: 421 PVA 423
           P+A
Sbjct: 421 PIA 423


>gi|317403407|gb|EFV83920.1| hypothetical protein HMPREF0005_02046 [Achromobacter xylosoxidans
           C54]
          Length = 453

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 174/437 (39%), Gaps = 35/437 (8%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
            G+ + + + +  +L     V  V + D      +    R + +F +  G +++ +    
Sbjct: 24  AGQTLEMQVGESRVL-AESGVTRVAIGDSQVLSAIATDSREVVVFARTEGVSSIQVWADG 82

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           G Q  ++ +     +  L   +   +A     R  +V   VV+ G   +  D  R   L+
Sbjct: 83  GVQAYDVHVA-AAGVTRLRAEVDALLARIPGARSSLVGGRVVVEGDDLSDDDHARIAALA 141

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGED-QVTLKVTIAEVRRDILKQIGFQH-SITGS 222
           E +               +VM+     G D  V L V + E+ R  L++IG +   +T  
Sbjct: 142 EHY--------------PEVMDFTGRVGWDSMVQLDVQVVEMPRSRLREIGVRWEGLTQG 187

Query: 223 SSGPSKSFAADFGGKFVSEG-----GDFSVKGVLDRFSFETVLHA----LERATAIRTLA 273
                 ++ A   G+    G         V  V   F    +L A    L ++     LA
Sbjct: 188 GVNAGLAWDAGSLGRMARPGEAVIDTPAPVSSVAGYFGVNALLSARIAALAQSGEAVMLA 247

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           +P L A SG SA+F +GG+  Y   + S G  +     YGV L  TP +   G I   I+
Sbjct: 248 QPQLLARSGASATFLAGGEVPY-VSTDSRGNPTTLFKPYGVSLRITPRIDRNGVIRSLIE 306

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            E S   + +     P+ R R+A T   + SG T+V+ G L  +      G+P L  IPI
Sbjct: 307 VEASSVDMALTGASGPALRTRRASTEFNVRSGDTLVIGGFLSRERADDSSGLPGLKDIPI 366

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LGALF + R+   ETE+ I  TP +V     R+     D      D     F   +++  
Sbjct: 367 LGALFASRRYQLRETELAIFVTPRIV----SRNEPAMTDRVRRGRDVIRAAFPEPSRL-- 420

Query: 454 PKEASEVEGQNYKGAIG 470
             E   + G N  G  G
Sbjct: 421 GTEVPVMAGWNIHGGKG 437


>gi|319943382|ref|ZP_08017664.1| type II and III secretion system protein [Lautropia mirabilis ATCC
           51599]
 gi|319743197|gb|EFV95602.1| type II and III secretion system protein [Lautropia mirabilis ATCC
           51599]
          Length = 434

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 105/411 (25%), Positives = 183/411 (44%), Gaps = 41/411 (9%)

Query: 32  ANAAVINISDVEIGKG--KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89
           A A+V+  S         + I++ L +  +++V   V  + +             R + L
Sbjct: 10  AAASVLRPSSTMTSTDAIETITLSLGQGHLMEVGQ-VLRIALGSGRVLQANWLDDRQLLL 68

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIERDIA-HLEMTLRRFIAD-SNIRVEMVSDTVVL 147
             +  G+  + L    G  +    IL+    +  L   +   + + S +R   + D ++L
Sbjct: 69  IPEAPGETTLHLWLKGGG-IRKYQILVTESNSVRLAQDMNLLLGENSGVRARALGDRILL 127

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVTIAEVR 206
            G   T + + RA EL + +               +V++L++  G +Q + L+V + E+ 
Sbjct: 128 EGQNPTEEGAWRAAELVKRY--------------PQVISLVSRRGYEQMINLEVKMIEIG 173

Query: 207 RDILKQIGFQHSITGSS----SGPSKSFAADF--GGKFVSEGGDFSVKGVLDRFSF---- 256
           R+ LKQ+G +    G+     SGPS     DF   G F+ EGG  + +G           
Sbjct: 174 RNALKQLGVRWQGGGAGDWAVSGPSFGVIGDFKRSGAFLPEGGAAATRGFAVAPRIHPFA 233

Query: 257 ---------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
                     +++  + +      LAEP L+  SG  A F +GG+     +S + GA +V
Sbjct: 234 TSASMVSSLSSMIDLMVQNGDAAVLAEPRLSTRSGGKARFVAGGELPIPVLS-ANGAANV 292

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              +YGV     P V + G I   + TEVS     V    +P  R + ++T V L  G T
Sbjct: 293 DFKEYGVRFEVEPVVNAQGVISASLHTEVSSIDDEVTVMGVPGLRKQSSNTDVNLRPGET 352

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +V+AG++++++      IP L  +PILG LFR+ RF + E+E+ +  TP L
Sbjct: 353 LVIAGMVRNEMSGAITKIPGLGDLPILGHLFRSKRFRQRESEMVVLITPRL 403


>gi|115379230|ref|ZP_01466346.1| type II and III secretion system protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822227|ref|YP_003954585.1| type II and III secretion system [Stigmatella aurantiaca DW4/3-1]
 gi|115363762|gb|EAU62881.1| type II and III secretion system protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395299|gb|ADO72758.1| Type II and III secretion system [Stigmatella aurantiaca DW4/3-1]
          Length = 485

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 100/443 (22%), Positives = 178/443 (40%), Gaps = 63/443 (14%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
           G  I++G+    ++ VP  +  + + DP  A+V       + + G+  G+  +I+    G
Sbjct: 31  GSTIALGVGTQKVITVPG-IARIALGDPNVAEVKNIGNNQVLIIGQTEGKTTLIIWKSSG 89

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           +++  L  +  +D   +   +++ + +   + V MV D + L G   T QD+ R  ++  
Sbjct: 90  QRVTFLIAVRRQDPNEIISEIKKLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVS 149

Query: 166 TFLSQSGRNQYANSS--------------------------------------------- 180
            + +     + A ++                                             
Sbjct: 150 LYPNVKSFVKIAPNAKKLVAQNLNAAYQKAGLRNVQANVVGSTIFLEGSVESQQDLQKAE 209

Query: 181 ------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
                  +KV NLL +  +  +  +V   E+RR+   + G ++    S S  + +  +  
Sbjct: 210 LITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYPTDISGSATASALISKE 269

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                   G  S++  L    F     A       R LA+P L   SG+ A F +GGQ  
Sbjct: 270 LFPGTFSSGVSSLQ-FLASADFAVGFQA--NDGYGRLLAQPKLVCASGEKAEFLAGGQVP 326

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMP 349
              ++      +V    YGV+L+  PT    G I   I+ E SE    V      +  +P
Sbjct: 327 IPLIT--NNQFTVEYKPYGVILNLRPTADRSGNIQTEIEAEASEIDTSVAVSIGGSAAVP 384

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
            +R RK  T V +  G TIVL+G+   D Q+    +P L  IPI+G LF+N  F+  + E
Sbjct: 385 GFRTRKVKTNVTVRHGETIVLSGVFSHDEQKAVSKLPGLGHIPIIGELFKNRAFDSTKRE 444

Query: 410 IFIAATPFLVKPVAMRDLSRPDD 432
           + I  TP +V P + +  +  +D
Sbjct: 445 LVIFVTPRIVNPDSDKIRTIIED 467


>gi|10956078|ref|NP_052165.1| exporter protein [Chlorobium limicola]
 gi|1688247|gb|AAB36938.1| exporter protein [Chlorobium limicola]
          Length = 461

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 100/470 (21%), Positives = 170/470 (36%), Gaps = 88/470 (18%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           + L +  I +    ++ V V DP  AD ++ +   +YL GK +G  N+++    G  + +
Sbjct: 9   VPLGESRIYRFAQPIKRVAVGDPQVADYIMMNRSEIYLLGKKLGSTNLVVWDQKGN-VTS 67

Query: 112 LDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS- 169
             + + R    L+  L+      N I ++ +   +VL G V     ++  + L   +   
Sbjct: 68  TPVQVSRGTTALQAFLKALFPKENDIHIDALGPALVLSGSVSDALVAESVIRLVTAYFGG 127

Query: 170 --------------------------------------------------QSGRNQYANS 179
                                                             +         
Sbjct: 128 SVSKSSPESALIGTDAKALTGVIGELNKSTTASNAESFAFFKKTLMMGDEKGASGSAGRD 187

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S++ V+NLL +    QV L+V IA+V R  L+ +G                  D  G   
Sbjct: 188 STRGVINLLKVRDPQQVRLEVRIAQVSRSYLESLGLS----------VTKLTGDLTGSLG 237

Query: 240 SEGGDFSVKGVLD---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                F     LD   +  ++  + A  + + ++ LAEPT+  +SG+   F  GG+    
Sbjct: 238 KLSTGFVSDATLDLLLKPDYDIKMGAKRKPSLLKILAEPTIVTMSGKEGYFLVGGKIYTP 297

Query: 297 T-VSSSTGATSVTTHDYGVVLHFTPT----VLSPG-----RIGLRIQTEVSEPVIGVNAG 346
           + V S      + T +       TPT    VL P          R+           +  
Sbjct: 298 SRVESQLDTAKLNTKN-------TPTAWVYVLRPSCWMQAVFHSRLYPRFLNLTRNHSLL 350

Query: 347 DMPSYRVRK----ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +     R       T VE+  G  +V+ GL  D++    + +PLL +IPILGALFRN+ 
Sbjct: 351 GLQKIGHRLNSAPVSTAVEMNEGENLVIGGLKLDNLTNAIDSVPLLGEIPILGALFRNTD 410

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
            N E+TE+ +   P LVK         P D +      + FF  ++    
Sbjct: 411 KNAEKTELMVIVRPTLVKASNTP-PELPTDKFVPPTRGELFFGGKLEGSR 459


>gi|283779187|ref|YP_003369942.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283437640|gb|ADB16082.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 940

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 118/503 (23%), Positives = 205/503 (40%), Gaps = 61/503 (12%)

Query: 21  PSVAKLPPIKEANAAVINISDV--EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
            ++ +  PI  A   +I        I +   +++ + +  +L+  VD+    V D +  D
Sbjct: 442 AALVQPEPIGPARVDMIPEGSPFEVIDESGVLTVRVRRSRLLRTKVDIYRTAVVDESICD 501

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHD-GKQMLNLDILIERDIAH----------LEMTL 127
           VV  +PR + + GK+ G  +V     D   Q L   + +E D             L+  +
Sbjct: 502 VVQFTPREVSIIGKSQGATHVTFWFDDPNSQPLTWLVKVEPDAEEVKKEEQTYKLLQDVI 561

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-----------------------S 164
                DS I + +V+  +++ G  +  +++ + + +                       +
Sbjct: 562 NEMFPDSKIELVVVASKLIVRGQAKDSEEAAQIISIIRAQTGGQGQNGLGGGQNGLGEGA 621

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
              +        ++ S  +V+N+L + G  QV LKV IAE+ R   +  G       S S
Sbjct: 622 AADVLSDSATGNSSRSRLQVINMLRVPGVHQVALKVKIAELNRTAARGFGVDLKTDISFS 681

Query: 225 GPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
              K  +          GG   ++   +D    +  +  L++   ++ LAEPTL  +SG+
Sbjct: 682 ESEKGSSLLLESILNMAGGQAPALLTQIDGDEIQIGIRYLQQHGVVKLLAEPTLVTLSGR 741

Query: 284 SASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A+F +GG+    TV  S G  A +     +G ++ F PTV+   RI L +  E S+   
Sbjct: 742 PATFIAGGEFAVPTVVGSAGLNAVTTDFRAFGAIISFMPTVVDKDRIRLEVAPEFSQINQ 801

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +N G  P  RVR A TTVE+  G T+ +AGLL+D++         +  +P L  +F   
Sbjct: 802 DLNVGGTPGLRVRAATTTVEMREGQTLAIAGLLEDNMNGTT-----IGDLPFLAKIFGRR 856

Query: 402 RFNREETEIFIAATPFLVKPVAMRDL-SRPDDHYSVEDDAKAFFFN-------------- 446
              R ETE+ I  +P LV P+   ++   P    +   + + F                 
Sbjct: 857 GMQRNETELLILVSPELVHPMEPEEVPPLPGFDVTEPTNGQFFLHGDLEGNPTQDYRSTV 916

Query: 447 --RVNKIYGPKEASEVEGQNYKG 467
             R+ K YG    S   G    G
Sbjct: 917 WPRLRKRYGSGGPSMTSGPFGHG 939


>gi|194366097|ref|YP_002028707.1| type II and III secretion system protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194348901|gb|ACF52024.1| type II and III secretion system protein [Stenotrophomonas
           maltophilia R551-3]
          Length = 452

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 108/424 (25%), Positives = 175/424 (41%), Gaps = 44/424 (10%)

Query: 62  VPVDVQDVLVSDPTKADVVVH-SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           +P D++ V ++DP  AD+V+    R   L GK  G   ++L      +   + + ++  +
Sbjct: 47  LPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHRKQAEPQRMQVRVQSAV 106

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
                T         +      +  +L G   ++    +    +   L + G     ++ 
Sbjct: 107 QGAADT-----GSGGLVFTQQDNQGLLQGSTDSVLSHMQEQRTAAMALGKDGTLADTSTI 161

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAA 232
           S   +  + +   +            +  LKQIG        +         G       
Sbjct: 162 SSGGVVQVEVKVVE----------FNKTALKQIGISFQNRNGNFAYGFARPGGQLPGNTG 211

Query: 233 DFGGKFVSEGGDFSVKGVLDRF---------SFETVLHALERATAIRTLAEPTLTAISGQ 283
              G      G+ +   +   F          +   +  L+     R LAEPTL A+SGQ
Sbjct: 212 ILPGMKEGNSGNEAESPISSAFRLVFGSTKGLWNADVDLLQSNGMARVLAEPTLVALSGQ 271

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339
           SASF +GG+          G T++T   +G+ L  TPTVL+P RI L++  E S+     
Sbjct: 272 SASFLAGGELPILE-PQGLGTTTITYKPFGIGLTVTPTVLAPNRIALKVAPEASDLDYSN 330

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            I +N   +PS   R+ADTTVEL  G + V+ GL+  ++      IPLL  +PI+G+ FR
Sbjct: 331 AIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSSVGKIPLLGDLPIIGSFFR 390

Query: 400 NSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           N  + R++ E+ I  TP LVKP+A   +L  P D      +AK         + GP    
Sbjct: 391 NFDYKRQDKELVIIVTPRLVKPLARNTELPLPGDR-----EAKPHMPEWGAWLLGPISQD 445

Query: 459 EVEG 462
            V G
Sbjct: 446 PVPG 449


>gi|70734199|ref|YP_257839.1| type II/III secretion system protein [Pseudomonas fluorescens Pf-5]
 gi|68348498|gb|AAY96104.1| bacterial type II/III secretion system protein [Pseudomonas
           fluorescens Pf-5]
          Length = 417

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 111/447 (24%), Positives = 182/447 (40%), Gaps = 53/447 (11%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           M +F      S+  L   +   AAV   S +       + IG      LQ  V +  + V
Sbjct: 6   MPLFSALLTLSLGPLLCTQALAAAVAGCSSLAPLPA-ALEIGEGLQQELQSAVAITRLAV 64

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
            DP  ADV     +   L G   G  ++++            + ++          R   
Sbjct: 65  GDPKIADVQTTGNKAFLLTGMAPGATSLMVWTACASTPRQSMVFVQG---------RATA 115

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
             S  R+    D ++       +Q   R VE+S T L ++  + +    +     L    
Sbjct: 116 DMSTGRLPASDDPLL----PSQVQTDIRFVEVSRTKLKEASVSIFGRGHN----FLFGAP 167

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV- 250
           G   VT                           G S S    FGG+  +   D     + 
Sbjct: 168 GTAPVT--------------------------GGTSGSVTPTFGGRRTNIPLDNGTFNIG 201

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                  T+++ALE +    TLA P+L A+SGQSASF +GG+      S+ + + ++   
Sbjct: 202 FGNGRVLTLINALEGSGFAYTLARPSLVALSGQSASFLAGGEIPIPVPSTGSNSVTIEYK 261

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGG 366
           ++G+ L  TPT++  GRI L++  EVSE      + +    +P+  VR+ DT++ L  G 
Sbjct: 262 EFGIRLTLTPTIVDRGRISLKVAPEVSELDYSNAVTIAGTQVPALTVRRTDTSISLADGE 321

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + V++GL+  +        P L  IP+LGA FR++  NREE E+ +  TP LV+P+A   
Sbjct: 322 SFVISGLISTNNSSQVNKFPGLGDIPVLGAFFRDTTINREERELLMVVTPHLVQPLAADA 381

Query: 427 --LSRPDDHYS--VEDDAKAFFFNRVN 449
              + P +       +  + FF    N
Sbjct: 382 KLPALPGERLRNYDPNFYRMFFLENGN 408


>gi|283778969|ref|YP_003369724.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283437422|gb|ADB15864.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 684

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 106/494 (21%), Positives = 188/494 (38%), Gaps = 67/494 (13%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
           +A   P  E +         +I     + + L +  IL      + + + D + A   V 
Sbjct: 138 MANPVPTAEVSQRFDRFIQRKIDPENTLEVILGRPRILVFNETPKRIYLPDESIAAFQVI 197

Query: 83  SPRTMYLFGKNVGQANVILI----GHDGKQMLNLDILI----------ERDIAHLEMTLR 128
             R + + G++VG   + L         + +L+  + +          E   A LE  + 
Sbjct: 198 DDRQISIVGRSVGSTALNLWVIDPETGKEIVLSYLVKVLPEPQLKERLEAVYAGLEREIN 257

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS--------- 179
           +    S I++ ++ D + + G      ++ + +++         ++++            
Sbjct: 258 QAFPRSKIQLSLIGDQLAVRGQAHDAVEANQILQIVARHSPTKSQDEFGRPVQYVQQAAF 317

Query: 180 --------------------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
                                     +   ++NLL I GE QV L+VT+AEV R   + I
Sbjct: 318 IDQQRDPLVDQDQAFLRQTVVDSALLARSGIINLLQIPGEQQVMLRVTVAEVNRTAARSI 377

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDF--SVKGVLDRFSFETVLHALERATAIRT 271
           G   S+  +      +   +  G+  + GG    +V   LD       ++AL      +T
Sbjct: 378 GLNFSVQNNQG---TTVFQNLTGQLGAAGGGNLSNVLASLDNGQVILAINALRSLRLAKT 434

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           LAEP LT ++GQ A+F +GG      +     TG        +GV + FTP V+   RI 
Sbjct: 435 LAEPNLTTLNGQQATFRAGGSFPVPQIGGLGGTGLQGTVFVPFGVSIEFTPYVIDRDRIR 494

Query: 330 LRIQTEVSEPVIGVNA----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           L++   VS     +              +     R  D+TVEL  G T+ +AGL++ ++ 
Sbjct: 495 LKLSAGVSVRDESLGTSIGGSAGAGGTQVAGLNSRTFDSTVELREGQTLAVAGLIQTNMG 554

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD-LSRPDDHYSVED 438
              + +P    +PI+G     SR    E E+ I  TP LV P+   D  S P        
Sbjct: 555 ADSDRVPFWGDLPIIGHTGGFSRTTAGEQELVILVTPELVHPLEACDTPSLPGADVFETG 614

Query: 439 DAKAFFFNRVNKIY 452
           D + +  N +    
Sbjct: 615 DIEFYLGNHLEARR 628


>gi|170725113|ref|YP_001759139.1| type II and III secretion system protein [Shewanella woodyi ATCC
           51908]
 gi|169810460|gb|ACA85044.1| type II and III secretion system protein [Shewanella woodyi ATCC
           51908]
          Length = 436

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 97/408 (23%), Positives = 174/408 (42%), Gaps = 44/408 (10%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHL 123
           +V+ ++V +       V   + + L  ++ G  +V L   DGK + L++ +  +  +   
Sbjct: 42  NVERIVVGNGKVLSAKVIDDKGVLLIAESPGNTDVQLWQKDGKLIKLSISVTPDNSLKTT 101

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           +   +   A  +I+V      +++ G                  LSQ  + +    +   
Sbjct: 102 DTIKKMLAAFPSIKVTENDGLIIVQGEAD---------------LSQKEQLETIIEADPN 146

Query: 184 VMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGG 236
           V++L+            + ++V I E  +  L  IG +   S+ G + G +K+F+A+   
Sbjct: 147 VVSLIKYLKFAKTMAPMIKMQVKIVEFNKSTLNNIGIKWESSMAGPAYGAAKAFSANPIF 206

Query: 237 KFVSEG--------GDFSVKGVLDRFSFE---------TVLHALERATAIRTLAEPTLTA 279
              S G              GVLD   +          + +  L      R LAEP LT 
Sbjct: 207 SVSSPGQYSETITSAITDSIGVLDTRGWNYFGIVTGIGSQIQLLSEKGDARMLAEPNLTT 266

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            SG+SA+F +GG+   ++VS   GA  V   +YG+ L   P V     I  R+  EVS  
Sbjct: 267 RSGESANFLAGGEFPIRSVSG-LGAVDVEYKEYGIKLDIEPVVDDDLNIVSRVMAEVSSI 325

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              V    +P    R+ ++ + + +  TIV++GL+  ++ ++    PLL  IPILG LF+
Sbjct: 326 DPSVAVDGIPGMLTRRTESVINVKNNETIVISGLVNSEMSKIVNKFPLLGDIPILGELFK 385

Query: 400 NSRFNREETEIFIAATPFLVKPVAM---RDLSRPDDHYSVEDDAKAFF 444
           +  F   ++E+ I  TP +V P      + L R  +     +  +AF+
Sbjct: 386 SRDFKDNKSELVIFVTPTVVYPGEESHDKQLERGLEMAEETNKLEAFY 433


>gi|283781350|ref|YP_003372105.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283439803|gb|ADB18245.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 940

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 118/503 (23%), Positives = 205/503 (40%), Gaps = 61/503 (12%)

Query: 21  PSVAKLPPIKEANAAVINISDV--EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
            ++ +  PI  A   +I        I +   +++ + +  +L+  VD+    V D +  D
Sbjct: 442 AALVQPEPIGPARVDMIPEGSPFEVIDESGVLTVRVRRSRLLRTKVDIYRTAVVDESICD 501

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHD-GKQMLNLDILIERDIAH----------LEMTL 127
           VV  +PR + + GK+ G  +V     D   Q L   + +E D             L+  +
Sbjct: 502 VVQFTPREVSIIGKSQGATHVTFWFDDPNSQPLTWLVKVEPDAEEVKKEEQTYKLLQDVI 561

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-----------------------S 164
                DS I + +V+  +++ G  +  +++ + + +                       +
Sbjct: 562 NEMFPDSKIELVVVASKLIVRGQAKDSEEAAQIISIIRAQTGGQGQNGLGGGQNGLGEGA 621

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
              +        ++ S  +V+N+L + G  QV LKV IAE+ R   +  G       S S
Sbjct: 622 AADVLSDSATGNSSRSRLQVINMLRVPGVHQVALKVKIAELNRTAARGFGVDLKTDISFS 681

Query: 225 GPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
              K  +          GG   ++   +D    +  +  L++   ++ LAEPTL  +SG+
Sbjct: 682 ESEKGSSLLLESILNMAGGQAPALLTQIDGDEIQIGIRYLQQHGVVKLLAEPTLVTLSGR 741

Query: 284 SASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A+F +GG+    TV  S G  A +     +G ++ F PTV+   RI L +  E S+   
Sbjct: 742 PATFIAGGEFAVPTVVGSAGLNAVTTDFRAFGAIISFMPTVVDKDRIRLEVAPEFSQINQ 801

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +N G  P  RVR A TTVE+  G T+ +AGLL+D++         +  +P L  +F   
Sbjct: 802 DLNVGGTPGLRVRAATTTVEMREGQTLAIAGLLEDNMNGTT-----IGDLPFLAKIFGRR 856

Query: 402 RFNREETEIFIAATPFLVKPVAMRDL-SRPDDHYSVEDDAKAFFFN-------------- 446
              R ETE+ I  +P LV P+   ++   P    +   + + F                 
Sbjct: 857 GMQRNETELLILVSPELVHPMEPEEVPPLPGFDVTEPTNGQFFLHGDLEGNPTQDYRSTV 916

Query: 447 --RVNKIYGPKEASEVEGQNYKG 467
             R+ K YG    S   G    G
Sbjct: 917 WPRLRKRYGSGGPSMTSGPFGHG 939


>gi|238759122|ref|ZP_04620291.1| Type II/III secretion system protein [Yersinia aldovae ATCC 35236]
 gi|238702670|gb|EEP95218.1| Type II/III secretion system protein [Yersinia aldovae ATCC 35236]
          Length = 354

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 100/380 (26%), Positives = 175/380 (46%), Gaps = 35/380 (9%)

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           +   + + M+   +L+   I  +   ++    DSNI +  + D+ +L G   + +     
Sbjct: 1   MFNRNNQPMIKTVVLVNNIINLVYQRIKVEYPDSNIEINKIGDSYILTGQAESEEAKDTI 60

Query: 161 VELSETFLSQSG----RNQYANSSSK-KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
             +    ++       ++QY N+ +   ++N + +   +QV +K+TIAEV +D  + IG 
Sbjct: 61  ASMVGEAVNNRREIKHKDQYLNNHNYLGIINKIKLPRPNQVNVKLTIAEVTKDFSENIGI 120

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
             S  G S G  +    +  G                     T++HA+   +  R LAEP
Sbjct: 121 DWSSIGESVGSFQFLKFNASG-------------------ISTLVHAINDDSIARILAEP 161

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L+ +SG+SASF  GG+      + +  +T +    YG+ L  +  V    +I +++  E
Sbjct: 162 NLSVLSGESASFLVGGEIPLYNTTQN--STIIKYKPYGIKLSISAKVNEHSKIRIKVDEE 219

Query: 336 VSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           VS      N       P+   RKA TT+EL  G + +L GL+    ++  + IP +  IP
Sbjct: 220 VSNIGKRFNVEGGNAYPTLETRKAATTLELADGESFILGGLITKSERESLKKIPFIGDIP 279

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           ILGA FRN++   ++TE+ + AT  LVKP+A  ++  P D  +     + F F R+ ++ 
Sbjct: 280 ILGAFFRNAQTENKQTELVVVATVSLVKPLAGTEVELP-DFMNTSTLERLFNFTRIIEVK 338

Query: 453 GPKEASEVEGQNYKGAIGFI 472
             K A E   +      GFI
Sbjct: 339 RKKVAKEFLRKG-----GFI 353


>gi|73539231|ref|YP_299598.1| type II and III secretion system protein [Ralstonia eutropha
           JMP134]
 gi|72122568|gb|AAZ64754.1| type II and III secretion system protein [Ralstonia eutropha
           JMP134]
          Length = 469

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 97/427 (22%), Positives = 169/427 (39%), Gaps = 50/427 (11%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
           +A +        A+   +  E       + +       ++    ++ V V +P  AD ++
Sbjct: 25  LAAMLATAMLVTAIPRATAQEAAPAPSTLRLMAGAQKEIRPAQPIERVAVGNPAVADALL 84

Query: 82  HSPRT----MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
              R+    + +  K  G  ++++    G       + ++                +NI 
Sbjct: 85  IKQRSGPPGVLVVAKQPGVTDLMIW-PRGAAQQTYTVQVDAITPDT--------GGANIA 135

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
              V  T+   G  R                      +  +     V++   +   + V 
Sbjct: 136 YSAVGATI--TGQSRDA----------YAAARAQTAARVGSGKGGVVVDRSTVPVSNTVQ 183

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----- 252
           + V + E+ + +LK++G       +S     SF+     KF    G     G        
Sbjct: 184 VDVKVVEISKTVLKEVGINF-FRNNSGFAFGSFSPSTLSKFTFTPGTGGANGSFSADITT 242

Query: 253 -------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                           F   +  LE     R LAEP+L A+SGQSASF SGG+     V 
Sbjct: 243 PISNAFNLVAASLSHGFFANISLLEANGLARVLAEPSLVALSGQSASFLSGGEIPIP-VP 301

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRK 355
            + G T++    +G+ L  +PTVLS  RI L++  E S+      I +N   +P+   R+
Sbjct: 302 QALGTTTIQFKPFGIGLTVSPTVLSDQRIALKVAPEASDLDPSRGIAINGAIVPAIVTRR 361

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ADTT+EL  G + V+ GL+  +       +P L  +P++G  F+N  F++E+ E+ I  T
Sbjct: 362 ADTTIELGDGESFVIGGLVSRNTVSNVNKVPFLGDLPVIGPFFKNLNFHQEDRELMIVVT 421

Query: 416 PFLVKPV 422
           P LVKP+
Sbjct: 422 PRLVKPL 428


>gi|304311185|ref|YP_003810783.1| Probable outer membrane channel protein [gamma proteobacterium
           HdN1]
 gi|301796918|emb|CBL45131.1| Probable outer membrane channel protein [gamma proteobacterium
           HdN1]
          Length = 470

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 97/434 (22%), Positives = 168/434 (38%), Gaps = 33/434 (7%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
            R +   ++ F + +  + A  P              V  G    ISI   +  +L  P 
Sbjct: 33  TRIWLAFITAFFWCATHANAAEP--------------VPPGYDDVISIVQGQTTLLPFP- 77

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ-MLNLDILIERDIAHL 123
           +V  V + +   A+        + L G   G  ++ +    GK     L I+       L
Sbjct: 78  NVVRVSIGEENLANAQPAGANEILLTGLKAGVTDLRIWPEHGKAKRYLLKIIDNTWTRVL 137

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           E++         +     +  V++ G +   QD+    +L      +    +   +    
Sbjct: 138 ELSNTVLADIEGVSAREDNGIVLIEGRLLREQDAAVIADLKAKLKKEVKEGKVVFN---- 193

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----------ITGSSSGPSKSFAA 232
            + L N+     V L V + EVR+  LK++G Q                  +G  +   +
Sbjct: 194 -VVLPNVKLAAMVMLDVHVVEVRKQDLKKLGVQWDSATAGPAYGVLGQFRGAGNFEKDTS 252

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            FG           V       S  + L+ L+       LA+P L   SG  ASF +GG+
Sbjct: 253 VFGFLMTENRSPIKVGNGYIGTSIGSKLNFLQSNGVAHVLAQPKLVTRSGSEASFLAGGE 312

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
               TV+      ++     GV+L  +P     G I   I  EVS+    V    +P + 
Sbjct: 313 IPIPTVTKDNQINTI-FKQVGVILKISPKADPDGFIETAINVEVSQVDASVQVLGIPGFI 371

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            RK    + + SG T+ ++G+L ++  +  + +P L  IPILG LF++  F +  TE+ I
Sbjct: 372 TRKTKMEMNVQSGQTMAISGMLSEESSKAIDKMPGLGSIPILGELFKSRDFRQNTTELMI 431

Query: 413 AATPFLVKPVAMRD 426
             TP+LV P + ++
Sbjct: 432 FVTPYLVDPDSEQN 445


>gi|238796996|ref|ZP_04640500.1| Type II/III secretion system protein [Yersinia mollaretii ATCC
           43969]
 gi|238719256|gb|EEQ11068.1| Type II/III secretion system protein [Yersinia mollaretii ATCC
           43969]
          Length = 340

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 99/338 (29%), Positives = 170/338 (50%), Gaps = 31/338 (9%)

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS----Q 170
           ++   I      +     DS+I ++ + D+ +L G V + ++      L    +     +
Sbjct: 1   MVNDIINATNKRIIAEYPDSHIEIDKIGDSYILTGEVESEEEKDTIATLVGEAIGSKKEE 60

Query: 171 SGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
           SG+ QY N+     ++N + +   +QV +K+TIAEV +D  + +G   S  G + G  + 
Sbjct: 61  SGKGQYFNTPYYSNIINKIKLPQSNQVNVKLTIAEVTKDFSENVGVDWSTAGDAVGSFQF 120

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                          F+ KG+       T++HA+   +  R LAEP L+ +SG+SASF  
Sbjct: 121 I-------------RFNAKGI------STLVHAINDDSIARILAEPNLSVLSGESASFLV 161

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AG 346
           GG+     +S++  + +V+  ++G+ L+    V    RI + I  EVS      N     
Sbjct: 162 GGEIPI--ISTTENSRTVSYKEFGIKLNIGAKVNEKKRIRIHINEEVSSIGKTFNIEGGD 219

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +PS R RKA+TT+EL  G + +L GL+    ++  + IPL+  IPILGALFRN++  + 
Sbjct: 220 SIPSLRTRKAETTLELGDGESFILGGLISHTERESLKKIPLIGDIPILGALFRNAQTEQN 279

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +TE+ + AT  LVK V+ +++  PD  +      + FF
Sbjct: 280 QTELVVIATVNLVKSVSKKEVELPD--FMHTSTLERFF 315


>gi|237653358|ref|YP_002889672.1| type II and III secretion system protein [Thauera sp. MZ1T]
 gi|237624605|gb|ACR01295.1| type II and III secretion system protein [Thauera sp. MZ1T]
          Length = 479

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 103/441 (23%), Positives = 185/441 (41%), Gaps = 43/441 (9%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           +R    ++   L    P  ++  P   A       + + +    +I +   +  +L    
Sbjct: 13  RRALPPLVCAILILGLPGPSRAAPPASAAPPEPGRAALAV--VHEIQMFAGETRVLP-QR 69

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER-DIAHL 123
           D Q + V D       V   R + L     G   + +    G+    + I + + D A +
Sbjct: 70  DAQRLAVGDAKVLSAAVLDDREILLIANGPGDTMLQVWTRSGRS-QRIKITVRQTDTARI 128

Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
              L+ F+ D   +R   + D VV+ G   +  +  +  EL++ F               
Sbjct: 129 ARDLQGFLHDVPRLRTRTIGDNVVIEGEGLSDAERDKVTELAKRF--------------P 174

Query: 183 KVMNLLNIAGEDQV-TLKVTIAEVRRDILKQIGFQHSITG-------------SSSGPSK 228
           ++++  +  G D++    V   E+ R  L+ +G   +  G               +    
Sbjct: 175 QLIDFTSRVGLDRMFAFDVRFVEISRSGLRDLGIDWTTQGKPLLGIGVIGDLYHDNRTGA 234

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDR-------FSFETVLHALERATAIRTLAEPTLTAIS 281
           +     G   +S   +     V           SF   L+ L +      LA P L+A +
Sbjct: 235 TVTRTLGSGELSSEVEIEANRVSPFAANVALVGSFFGRLNLLAQKGDAVILASPRLSARN 294

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPV 340
              ASF +GG+     V+S+TG  SVT  +YG+ L+   P   + G I  RI+TEVS   
Sbjct: 295 RGEASFLAGGEIPVP-VASATGTPSVTFKEYGIRLNILEPVADAAGTIRARIRTEVSSLD 353

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             V A  +P    R+ +T   L +G T+VL+G+L+ + Q  +  +P L ++P++G LFR+
Sbjct: 354 RSVAAQGVPGLLSRRTETEFNLRNGETLVLSGVLQREQQSDENALPHLGELPVIGRLFRS 413

Query: 401 SRFNREETEIFIAATPFLVKP 421
           +RFN  E+E+ +  TP+L++P
Sbjct: 414 TRFNSRESELVVFVTPWLLEP 434


>gi|119773845|ref|YP_926585.1| putative type II and III secretion system outermembrane protein,
           secretin [Shewanella amazonensis SB2B]
 gi|119766345|gb|ABL98915.1| putative type II and III secretion system outermembrane protein,
           secretin [Shewanella amazonensis SB2B]
          Length = 423

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 102/408 (25%), Positives = 181/408 (44%), Gaps = 41/408 (10%)

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            +V+ V+V +       V   + + L G++ G +++ L   DG  +  L +++ ++ A  
Sbjct: 27  ANVERVVVGNGGVLSAKVLDEKNVILIGESEGLSDIQLWQKDG-TVRKLSVVVTKENAQT 85

Query: 124 E-MTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDS--QRAVELSETFLSQSGRNQYANS 179
              T++R +A+  +I V      +V+HG     Q    ++ ++  +  L      +Y  S
Sbjct: 86  TVGTMKRMLAEFPSIEVTESDGVIVIHGEADASQRETLEKVLDGKDNILPLIKYVKYGKS 145

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAAD---- 233
                        E  V ++V I E  +  L  IG Q    ++G + G +K+F A+    
Sbjct: 146 I------------EPMVKMEVKIVEFNKSTLNNIGVQWENVMSGPAFGAAKAFTANPIFS 193

Query: 234 ----------FGGKFVSEGGDFSVKG---VLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                      GG      G    +G           + +  L      R LAEP LT  
Sbjct: 194 VSSPGQYANSIGGAVSDAIGVLDTRGWSYFGIVTGIGSQIQLLAEKGDARMLAEPNLTTR 253

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           SG++ASF +GG+   +TVS   G+  +   +YG+ L+  P V +   I  R+  EVS   
Sbjct: 254 SGEAASFLAGGEIPIRTVSG-VGSVDIQYKEYGIRLNIEPVVDADNNIVSRVMAEVSAVD 312

Query: 341 IGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
             +   G  P +  R+ ++ + + +  T+V++GL+  ++ ++    PLL  IPILG LF+
Sbjct: 313 PSIQLEGSAPGFLTRRTESVINVKNKQTMVISGLVNSEMSKVVNKFPLLGDIPILGELFK 372

Query: 400 NSRFNREETEIFIAATPFLVKPVA---MRDLSRPDDHYSVEDDAKAFF 444
           +  F  E+TE+ I  TP +V P      + LSR  +        +AF+
Sbjct: 373 SRNFREEKTELVIFVTPTVVYPGEDSHEKSLSRARELVDDAAKLEAFY 420


>gi|33593509|ref|NP_881153.1| putative secretory apparatus [Bordetella pertussis Tohama I]
 gi|33572865|emb|CAE42800.1| putative secretory apparatus [Bordetella pertussis Tohama I]
 gi|332382917|gb|AEE67764.1| putative secretory apparatus [Bordetella pertussis CS]
          Length = 470

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 105/433 (24%), Positives = 174/433 (40%), Gaps = 44/433 (10%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           R        +++       P     PP   A  AV+ +   E+G+ + ++          
Sbjct: 12  RGWLPWMAVLLAGGTMLWTPGGRAAPP---AQPAVLRM---EVGETQVLA---------- 55

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI-GHDGKQMLNLDILIERDI 120
               V  V V +       V     + LF +  G ++V +  G   +Q   +++L     
Sbjct: 56  -AAGVTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVL-PAGR 113

Query: 121 AHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
             L   +   +A     R   V   +V+ G   +  D  R   L++ +            
Sbjct: 114 RRLREEVAALLARIPRARSSAVGAHIVIEGSQLSEDDHARIAALAQRY------------ 161

Query: 180 SSKKVMNLLNIAGED-QVTLKVTIAEVRRDILKQIGFQH---SITGSSSG----PSKSFA 231
              +V++     G D  V L V + E+ R  L+++G +    ++ G  +G     S +  
Sbjct: 162 --PEVLDFTGRVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAVGGVHAGAVWNGSSAAL 219

Query: 232 ADFGGKFVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           A   G            G+L         L AL +      LA+P L A SG +ASF +G
Sbjct: 220 APPPGPLAGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAG 279

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G+  Y+T       T++    YGV L  TP + + G +  RI+ E S     +     P+
Sbjct: 280 GELPYRTTDKEGNGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPA 338

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            R R+A T   + SG T+VL G L  +    ++G+P LS++P++GALF   R    ETE+
Sbjct: 339 LRKRRAVTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETEL 398

Query: 411 FIAATPFLVKPVA 423
            I  TP +V P  
Sbjct: 399 AIFVTPTIVSPSD 411


>gi|221066739|ref|ZP_03542844.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
 gi|220711762|gb|EED67130.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
          Length = 467

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 100/456 (21%), Positives = 166/456 (36%), Gaps = 74/456 (16%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEI----GKGKKISIGLNKVIILQVPV 64
           FT + +   +   + A     + A A  +    V +    G    + + +    +L   +
Sbjct: 7   FTALGLASSAILSTFATSAMAQTAAADNVRAGVVSVATPTGAASPLPLTMGSQHVLLPAM 66

Query: 65  DVQDVLVSDPTKADVVVHSPR------TMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
            +  + V DP   DV V           + L  K  G   + +    G    +  + +  
Sbjct: 67  PLARLAVGDPNVLDVKVLRSTGNSSAPELLLTPKAPGSTTLSIWSTRG-LSQSWQVEVSS 125

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
               L+  L                                A+EL+   L  +      +
Sbjct: 126 PSLLLKKNLDSV--------------------------HDHALELASLRLKAAKDTALLD 159

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------- 231
            S   V +         V + V + E ++  LK+ G     +G S+    SF        
Sbjct: 160 RSQISVRSNT-------VQVDVQVVEFKKTALKRAGINL-FSGGSNNHGFSFGMYTPGAS 211

Query: 232 ------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
                                     +                   L  LE     R LA
Sbjct: 212 SSSGSGSSSGGSGDGGASGGSTALSSAMNLVLGFSKAFSGAGISAQLGFLEGNGLARVLA 271

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           +PTL A +GQSASF +GG+      S+S+   S+   ++GV L  TPTVLS  RI L++ 
Sbjct: 272 KPTLVAHTGQSASFLAGGEIPIPVPSTSSNNISIRYKEFGVKLQLTPTVLSNERIALKVA 331

Query: 334 TEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            E S+      + +    +P+   R+ADT VEL  G + V+ GL+          +PLL 
Sbjct: 332 PEASDLDYTSGVTIAGVAVPAIATRRADTMVELADGESFVIGGLVSRSTSSSVNKVPLLG 391

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            +PILG  F+N  ++++E E+ I  TP LV+P+ ++
Sbjct: 392 DLPILGPFFKNLNYSQDEKELVIIVTPRLVQPLPVQ 427


>gi|170720034|ref|YP_001747722.1| type II and III secretion system protein [Pseudomonas putida W619]
 gi|169758037|gb|ACA71353.1| type II and III secretion system protein [Pseudomonas putida W619]
          Length = 419

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 100/458 (21%), Positives = 180/458 (39%), Gaps = 63/458 (13%)

Query: 2   RYLQRTFFTMMSIFLF--SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII 59
           R   + FF++  + L   +  P+        EA A + ++ +++ G  +++         
Sbjct: 6   RCSSKRFFSLACLALLTVALLPNAHGASKGCEAFAQLPSVIEIDQGLQQEL--------- 56

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
            ++P+ +    V DP  ADV     R + +     G   ++L            + + + 
Sbjct: 57  -RLPLAITRAAVGDPKVADVQPSGDRAVLVTAVGQGNTTLMLWTACAPGPHRAMLFV-KG 114

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
            A   M         +  +               +Q   R VE+  T   ++G   + + 
Sbjct: 115 QASAAMAETGLPPSLDPEL------------PSQVQADIRFVEVRRTKYKEAGARLFFSG 162

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S+  ++          VT       V                               +  
Sbjct: 163 SNNSLIGSPGTVPGTSVTPGA--VPVT----------------------------SPQIP 192

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
              G F++        F   ++ALE +    TLA P+LT +SG +ASF +GG+      S
Sbjct: 193 LNNGVFNIVWGGGSSRFLAAINALENSGFAYTLARPSLTVLSGLTASFLAGGEIPIPVPS 252

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRK 355
           + +   S+   ++GV L  TPTV+S  RI L++  EVSE      + +    +P   +R+
Sbjct: 253 AGSDNFSIEYKEFGVRLALTPTVISRDRITLKVAPEVSELDYTNAVTIGGTSVPGLSIRR 312

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            DT++ L  G + +++GL+ ++ +   + +P L  +PILGA FR S   REETE+ +  T
Sbjct: 313 TDTSISLADGESFIISGLVGNNTRSAVDKLPGLGNLPILGAFFRQSALVREETELLMIVT 372

Query: 416 PFLVKPVAMR----DLSRPDDHYSVEDDAKAFFFNRVN 449
           P LV+P+A      +L             + FF    N
Sbjct: 373 PHLVQPLAANARLPELPGEGLRTYDPSWGRLFFMENGN 410


>gi|331092898|ref|ZP_04586842.2| type II and III secretion system protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021233|gb|EGI01290.1| type II and III secretion system protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 416

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 104/427 (24%), Positives = 173/427 (40%), Gaps = 54/427 (12%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           A AA  + + +       I I       +Q PV +  + V DP  ADV V +     L G
Sbjct: 26  AWAASGSCNGLAAMPA-AIEIDQGIQQNVQSPVAITRIAVGDPKVADVHVSNSDGFLLTG 84

Query: 92  KNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
              G  ++++            + +  R  A +  TL     D+N+              
Sbjct: 85  VAQGTTSLMVWTACSSAPRQSMVFVRGRASASMVETLAAPSTDANL-------------- 130

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
              +Q   R +E+S T L ++  + +   S+  +           VT             
Sbjct: 131 PSQVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTP------------ 178

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
                     G+ SG   S   +          +F++           +L+A+E +    
Sbjct: 179 ----------GTVSGTRPSIPLN--------NSNFNIVWGGGSSKVLGMLNAMENSGYAY 220

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           TLA P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI L
Sbjct: 221 TLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILL 280

Query: 331 RIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           ++  EVSE      I ++   +P+  +R+ DT++ L  G + V++GL+        +  P
Sbjct: 281 KVAPEVSELDFSAGITISGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFP 340

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP--VAMRDLSRPDDHYS--VEDDAKA 442
            L  IPILGA FR+S+  R+E E+ +  TP LV+P  V  R  S P +          + 
Sbjct: 341 GLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAVDARLPSLPGESLRNYDPSFPRL 400

Query: 443 FFFNRVN 449
           +F    +
Sbjct: 401 YFLENGD 407


>gi|104779900|ref|YP_606398.1| type II/IV secretion system protein D [Pseudomonas entomophila L48]
 gi|95108887|emb|CAK13583.1| Putative type II/IV secretion system protein D [Pseudomonas
           entomophila L48]
          Length = 426

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 101/444 (22%), Positives = 183/444 (41%), Gaps = 49/444 (11%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
           +  + + L    P          A   +  + +++ G  +++          ++PV +  
Sbjct: 10  WLCLVVPLMLLMPQALATGKGCAAFDQMPTVIEMDQGLQQEL----------RLPVAITR 59

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTL 127
           V V +P  ADV     R + L G   G  +++L      +     + I  R  A +    
Sbjct: 60  VAVGEPKVADVQASGERAVLLTGVGQGNTSLMLWTDCAPKPHRAMVFIKGRASADMAEVA 119

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
            +    + +  ++ +D       +R ++  +   + +   L   G N     S   V N 
Sbjct: 120 LQATEQAPLPTQVQAD-------IRFVEVRRLKYKEAGAKLFFKGSNNSLFGSPGTVPNT 172

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           +   G                          + G  +G +    AD       +   F++
Sbjct: 173 VVRPG-------------------------YVPGIQTGTNPVTYADVRPGIPLDNDVFNI 207

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
                   F  +++ALE +    TLA P+LT +SG +ASF +GG+      SS +   S+
Sbjct: 208 VWGGGSSRFLAMINALENSGFAYTLARPSLTVLSGLTASFLAGGEIPIPVPSSGSDNVSI 267

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELP 363
              ++GV L  TPTV+S  RI L++  EVSE        +    +P   VR+ DT++ L 
Sbjct: 268 EYKEFGVRLALTPTVVSGNRINLKVAPEVSELDYNNAVVIAGTRVPGLSVRRTDTSITLA 327

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G + +++GL+  +++   + +P L  +PI+GA FR +  NREETE+ +  TP LV+P+A
Sbjct: 328 DGESFIISGLITSNVRSGVDKMPGLGNLPIIGAFFRQTALNREETELLMIVTPHLVQPLA 387

Query: 424 MRD--LSRPDDHYSVEDDAKAFFF 445
           +       P +     D +    F
Sbjct: 388 VNAKLPELPGEGLRTYDPSWGHLF 411


>gi|163856388|ref|YP_001630686.1| putative outer membrane protein [Bordetella petrii DSM 12804]
 gi|163260116|emb|CAP42417.1| putative outer membrane protein [Bordetella petrii]
          Length = 458

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 96/382 (25%), Positives = 167/382 (43%), Gaps = 29/382 (7%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ + +  +L+   +V  V V +      V    R + LF +  G ++V +    G   
Sbjct: 30  LTLEVGQTRVLRH-AEVTRVAVGNGQVVSAVSVDGREVVLFARQEGASSVHVWAPRG-VA 87

Query: 110 LNLDILIER-DIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
              ++ +     A ++  ++  +    N+R  +V   VVL G      D  R   L++ +
Sbjct: 88  AAYEVQVRPAGWALIQEEVQTLLRHIPNVRSSVVGGNVVLEGDDLADDDRARVAALAQRY 147

Query: 168 LSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSS 223
                          ++++    +  ++ V L V + E+    L++ G Q    S  G  
Sbjct: 148 --------------PRILDFTGQVGWDNMVLLDVQVVEIPSARLREFGLQWDALSQGGLH 193

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET------VLHALERATAIRTLAEPTL 277
           +G      +       ++    S++G+     F         L AL +      LA+P L
Sbjct: 194 AGGVWQPGSSLQLADAAQPPALSMQGMGAAGYFGVNALLSARLAALAQRGEAVMLAQPQL 253

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            A SG +ASF +GG+  Y T + + G +S     YGV L+ TP +   G I  RI+ E S
Sbjct: 254 LARSGTTASFLAGGEVPYST-TDAQGNSSTEFKPYGVSLNITPRIDRNGAIRSRIEVEAS 312

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                ++    P+ R R+A T   + SG T+VL G L  +    + G+P+L  IP+LGAL
Sbjct: 313 SIDTSLSVAGGPALRTRRAVTEFNVRSGQTLVLGGFLSRERSHERSGLPVLQDIPLLGAL 372

Query: 398 FRNSRFNREETEIFIAATPFLV 419
           F + R   +ETE+ I  TP +V
Sbjct: 373 FSSRRDQHKETELAIFVTPRIV 394


>gi|160897515|ref|YP_001563097.1| type II and III secretion system protein [Delftia acidovorans
           SPH-1]
 gi|160363099|gb|ABX34712.1| type II and III secretion system protein [Delftia acidovorans
           SPH-1]
          Length = 492

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 92/473 (19%), Positives = 176/473 (37%), Gaps = 44/473 (9%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           LQR  +T+       + P     P        +      ++  G  + +   +  ++ + 
Sbjct: 14  LQRAVWTLCGSMALLALPPAVSAPADTAGVQGMHAPGAGDMPSGDSLQLVAGRQHLMPLA 73

Query: 64  VDVQDVLVSDPTKADVVVH----------SPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
                + V DP   DV +               + L  K  G   +++    G      +
Sbjct: 74  STPGRIAVGDPNVLDVKLLRATPGSGAGAGGTELLLTPKAQGSTTLVVWPQKGGAPQRWE 133

Query: 114 ILIE-------------RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           + +               + A     LR++     + V+       +     T+Q   + 
Sbjct: 134 VQVRGQHLLLEKRLTSVPEHAQAVAELRQYAPAQTLLVDNAQ----IDVKSNTVQVDVQV 189

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           VE  ++ + + G N Y+   + +  +  + +          +  +  +         +  
Sbjct: 190 VEFKKSAMKRIGVNIYSGGRNNQGFSFGSFSPG-------VVGSISTNTNGTGTGTGTGN 242

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDF--SVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
             + G      ++     ++       +           T L  LE     R LA PTL 
Sbjct: 243 TGTGGTGSGGVSNNTSSAIASAMSLVMTFGKAFSGAGIVTQLSILEGNGMARVLARPTLL 302

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS- 337
           A +GQ+ASF +GG+     V +  G  ++   ++G+ L  TPT+LS  RI L++  E S 
Sbjct: 303 AQTGQNASFLAGGELPIP-VPARDGNIAIQYKEFGIKLQLTPTILSDDRIALKVSPEASD 361

Query: 338 ---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                 + ++   +P+ R R+ADT+VEL  G + V+ GL+          +P+L  +PIL
Sbjct: 362 LDFNSGVTISGVTVPAIRTRRADTSVELADGESFVIGGLVSRATTSNVSKVPVLGDLPIL 421

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMR---DLSRPDDHYSVEDDAKAFF 444
           G  F+N  + +EE+E+ I  TP LV P+      +   P       +  K + 
Sbjct: 422 GTFFKNLNYTQEESELVIIVTPRLVHPLPASTNLEALLPGAQSEQRNAGKVWL 474


>gi|330959995|gb|EGH60255.1| type II and III secretion system protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 416

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 94/421 (22%), Positives = 161/421 (38%), Gaps = 54/421 (12%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           AA  + S +       + I       +  PV +  + V DP  ADV V       L G  
Sbjct: 28  AAPGSCSTLAAMPA-AVEIDQGIQQNISSPVAITRIAVGDPKIADVHVSGNDGFLLTGVA 86

Query: 94  VGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
            G  ++++            + +  R  A +  T      D+ +                
Sbjct: 87  QGTTSLMVWTACSSAPRQSMVFVRGRATASMVETASAPSGDAQL--------------PS 132

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
            +Q   R VE+S + L ++  + +   S+  +           V                
Sbjct: 133 QVQTDIRFVEVSRSKLKEASTSIFGKGSNNFLFGAPGTVPGVNV---------------- 176

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                         +    +           +F++           +L+A+E +    TL
Sbjct: 177 --------------TPGTVSATKPNIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYTL 222

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           A P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI L++
Sbjct: 223 ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 282

Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
             EVSE      I +    +P+  +R+ DT++ L  G + V++GL+        +  P L
Sbjct: 283 APEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGL 342

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFF 444
             IPILGA FR+S+  R+E E+ +  TP LV+P+A      S P +          + +F
Sbjct: 343 GDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRNYDPSFPRLYF 402

Query: 445 F 445
            
Sbjct: 403 L 403


>gi|320322730|gb|EFW78823.1| type II/III secretion system protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330485|gb|EFW86464.1| type II/III secretion system protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 416

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 103/429 (24%), Positives = 171/429 (39%), Gaps = 54/429 (12%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89
           + A AA  + + +       + I       ++ PV +  + V DP  ADV V+      L
Sbjct: 24  QSAWAASGSCAGLAAMPA-AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLL 82

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
            G   G  ++++            + +  R  A +  T+    AD+ +            
Sbjct: 83  TGVAQGTTSLMVWTACATAPRQSMVFVRGRATASMVETVPAPSADAEL------------ 130

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
                +Q   R +E+S T L Q+G + +   S+  +       G       VT+      
Sbjct: 131 --PSQVQTDIRFIEVSRTKLKQAGTSIFGKGSNNFLF------GAPGTVPGVTV------ 176

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                             +    +            F++           +L+ALE +  
Sbjct: 177 ------------------TPGTVSGALPSIPLAESAFNIVWGGGSSKVLGILNALENSGF 218

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
             TLA P+L A+SGQSASF +GG+      ++     S+   ++GV L  TPTV+   RI
Sbjct: 219 AYTLARPSLVALSGQSASFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTLTPTVVGRNRI 278

Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L++  EVSE      I +    +P  R R+ DT++ L  G + V++GL+        E 
Sbjct: 279 LLKVAPEVSELDFTSEISIAGTTVPIIRTRRTDTSIALADGESFVVSGLINTSNISTVEK 338

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDA 440
            P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A      S P +          
Sbjct: 339 FPGLGDIPILGAFFRSSKIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFP 398

Query: 441 KAFFFNRVN 449
           + +F    +
Sbjct: 399 RLYFLENGD 407


>gi|330819176|ref|YP_004348038.1| type II and III secretion system protein [Burkholderia gladioli
           BSR3]
 gi|327371171|gb|AEA62526.1| type II and III secretion system protein [Burkholderia gladioli
           BSR3]
          Length = 564

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 99/463 (21%), Positives = 185/463 (39%), Gaps = 43/463 (9%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
           +   PP   A  A  +  +    +   + +   ++ ++ VP  ++ + + D +     V 
Sbjct: 25  IPGAPPALAARQAE-HEENATPAQHALLDLYRGEIRLIDVPGRIKRIAIGDGSLVTANVV 83

Query: 83  SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER-DIAHLEMTLRRFIAD-SNIRVEM 140
             R + L  +  G  +++    +G   LN  + + + ++      LR  +A   +++V  
Sbjct: 84  DGR-LMLLAEKAGVTSLVAWTANG-IALNTTVRVAKGNVRETAAQLREVLAIVPDVKVIE 141

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----AGEDQV 196
               ++L G V                    GR + A +    ++N + +    A +  +
Sbjct: 142 SGPNILLTGTV---------------HRDMLGRIKAATAGVPNLVNAIAVDEGDALKKTI 186

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
             KV I E+ R+  + +G +       +GP        G + V+  G   + G+      
Sbjct: 187 HFKVRIMELTRNAQENLGIEW--DRKIAGPQAGAQGYIGSQAVAGPG-MVIAGI--STHI 241

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
            + L+ +        LA P L   SG +ASF +GGQ      + + G T V   DYG+ L
Sbjct: 242 ASTLNLMITRGDAYVLAAPELNTKSGGTASFLAGGQVPIP-RAGALGTTDVEYKDYGIKL 300

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
              P V +   I  +I TE+S+    V+ G  P +  R A + + L +G T+ ++GL+  
Sbjct: 301 DIKPVVDANNVISAQIDTEISQIDPSVSYGGYPGFLTRSARSDISLRAGETMAISGLVNA 360

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           D       +P L ++PI+G LFR+  F  + +++ I  TP +  P     L+   D  + 
Sbjct: 361 DAIGNMSRLPFLGRLPIIGRLFRSDEFRSKRSDLVIFVTPMISDPT----LAPNTDLLAR 416

Query: 437 EDDAKAFFFNRV---------NKIYGPKEASEVEGQNYKGAIG 470
            D     F  R          ++  G  EA +  G       G
Sbjct: 417 ADRIDRGFHQRHGDPSPLAERDRARGKDEARQAIGPTRPQPAG 459


>gi|33601080|ref|NP_888640.1| putative secretory apparatus [Bordetella bronchiseptica RB50]
 gi|33575515|emb|CAE32593.1| putative secretory apparatus [Bordetella bronchiseptica RB50]
          Length = 470

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 100/421 (23%), Positives = 171/421 (40%), Gaps = 38/421 (9%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           + +  +  S+   P  + A+ A   +  +E+G+ + ++              V  V V +
Sbjct: 18  MAVLLAGGSMLWTPGGRAASPAQPAVLRMEVGETQVLA-----------AAGVTRVAVGN 66

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILI-GHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
                  V     + LF +  G ++V +  G   +Q   +++L       L   +   +A
Sbjct: 67  GQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVL-PAGRRRLREEVAALLA 125

Query: 133 D-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
                R   V   +V+ G   +  D  R   L++ +               +V++     
Sbjct: 126 RIPRARSSAVGAHIVIEGSQLSEDDHARIAALAQRY--------------PEVLDFTGRV 171

Query: 192 GED-QVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFA----ADFGGKFVSEGG 243
           G D  V L V + E+ R  L+++G +    +  G  +G   +      A   G       
Sbjct: 172 GWDRMVLLDVQVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGPLSGAAA 231

Query: 244 DFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                G+L         L AL +      LA+P L A SG +ASF +GG+  Y+      
Sbjct: 232 VRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYRATDKEG 291

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
             T++    YGV L  TP + + G +  RI+ E S     +     P+ R R+A T   +
Sbjct: 292 NGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRAVTEFNV 350

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            SG T+VL G L  +    ++G+P LS++P++GALF   R    ETE+ I  TP +V P 
Sbjct: 351 HSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTPTIVSPS 410

Query: 423 A 423
            
Sbjct: 411 D 411


>gi|330895618|gb|EGH27925.1| type II and III secretion system protein [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 416

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 94/443 (21%), Positives = 169/443 (38%), Gaps = 57/443 (12%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L +   +    P    A+ +   ++ +       + I       ++  V +  + V DP 
Sbjct: 13  LLALVIAALCAPGAWAASGSCAGLAAMPAA----VEIDQGIQQEVRSAVPITRIAVGDPK 68

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADS 134
            ADV V+      L G   G  ++++            + +  R    +  ++    AD+
Sbjct: 69  IADVHVNGTDGFLLTGVAQGTTSLMVWTACASAPRQSMVFVRGRATTAMVESVTAPSADA 128

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
            +                 +Q   R +E+S T L ++  + +   SS  +          
Sbjct: 129 QL--------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGV 174

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            VT                                              +F++       
Sbjct: 175 NVTPGAV------------------------------GGITPSIPLNNSNFNIVWGGGSS 204

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
               +++A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV
Sbjct: 205 KVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGV 264

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            L  TPTV+   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V+
Sbjct: 265 RLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVV 324

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLS 428
           +GL+        +  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A   R  S
Sbjct: 325 SGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPS 384

Query: 429 RPDDHYSV--EDDAKAFFFNRVN 449
            P +          + +F    +
Sbjct: 385 LPGEGLRTYDPSFPRLYFLENGD 407


>gi|33596527|ref|NP_884170.1| putative secretory apparatus [Bordetella parapertussis 12822]
 gi|33566296|emb|CAE37209.1| putative secretory apparatus [Bordetella parapertussis]
          Length = 470

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 99/421 (23%), Positives = 170/421 (40%), Gaps = 38/421 (9%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           + +  +  S+   P  + A+ A   +  +E+G+ + ++              V  V V +
Sbjct: 18  MAVLLAGGSMLWTPGGRAASPAQPAVLRMEVGETQVLA-----------AAGVTRVAVGN 66

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILI-GHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
                  V     + LF +  G ++V +  G   +Q   +++L       L   +   +A
Sbjct: 67  GQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVL-PAGRRRLREEVAALLA 125

Query: 133 D-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
                    V   +V+ G   +  D  R   L++ +               +V++     
Sbjct: 126 RIPRAHSSAVGAHIVIEGSQLSEDDHARIAALAQRY--------------PEVLDFTGRV 171

Query: 192 GED-QVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFA----ADFGGKFVSEGG 243
           G D  V L V + E+ R  L+++G +    +  G  +G   +      A   G       
Sbjct: 172 GWDRMVLLDVQVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGPLAGAAA 231

Query: 244 DFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                G+L         L AL +      LA+P L A SG +ASF +GG+  Y+      
Sbjct: 232 VRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYRATDKEG 291

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
             T++    YGV L  TP + + G +  RI+ E S     +     P+ R R+A T   +
Sbjct: 292 NGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRAVTEFNV 350

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            SG T+VL G L  +    ++G+P LS++P++GALF   R    ETE+ I  TP +V P 
Sbjct: 351 HSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTPTIVSPS 410

Query: 423 A 423
            
Sbjct: 411 D 411


>gi|254523433|ref|ZP_05135488.1| type II and III secretion system protein:Transport-associated
           [Stenotrophomonas sp. SKA14]
 gi|219721024|gb|EED39549.1| type II and III secretion system protein:Transport-associated
           [Stenotrophomonas sp. SKA14]
          Length = 433

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 109/425 (25%), Positives = 178/425 (41%), Gaps = 44/425 (10%)

Query: 61  QVPVDVQDVLVSDPTKADVVVH-SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
            +P D++ V ++DP  AD+V+    R   L GK  G   ++L      +   + + ++  
Sbjct: 27  SLPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHRKQAEPQRVQVRVQSA 86

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           +     T       S +         +L G   ++    +  + +   L + G+   A++
Sbjct: 87  VQGAANT-----GTSGLLFTQQDQQGLLQGSTDSVLAHMQEQQTAAMALGKEGQLADAST 141

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFA 231
            S   +  + +   +            +  LKQIG        S         G      
Sbjct: 142 VSSGGVVQVEVKVVE----------FNKTALKQIGISFQNRNGSFAYGIARPGGQLPGNT 191

Query: 232 ADFGGKFVSEGGDFSVKGVLDRF---------SFETVLHALERATAIRTLAEPTLTAISG 282
               G    E G+ S   +   F          +   +  L+     R LAEPTL A+SG
Sbjct: 192 GILPGMKEGESGNESTSPISSAFRLVFGSTKGLWNADVDLLQSNGMARVLAEPTLVALSG 251

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
           QSASF +GG+          G T++T   +G+ L  TPTVL+P RI L++  E S+    
Sbjct: 252 QSASFLAGGELPILE-PQGLGTTTITYKPFGIGLTVTPTVLAPNRIALKVAPEASDLDYS 310

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             I +N   +PS   R+ADTTVEL  G + V+ GL+  ++      IPLL  +PI+G+ F
Sbjct: 311 NSIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSSVNKIPLLGDLPIIGSFF 370

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           RN  + R++ E+ I  TP LV+P+A   +L  P    +  +          + + GP   
Sbjct: 371 RNFDYKRQDKELVIIVTPRLVQPLARNTELPLPGAREAKPN-----LPEWGSWLLGPISQ 425

Query: 458 SEVEG 462
             V G
Sbjct: 426 DPVPG 430


>gi|71735124|ref|YP_276550.1| type II/III secretion system protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555677|gb|AAZ34888.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 416

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 102/429 (23%), Positives = 170/429 (39%), Gaps = 54/429 (12%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89
           + A AA  + + +       + I       ++ PV +  + V DP  ADV V+      L
Sbjct: 24  QSAWAASGSCAGLAAMPA-AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLL 82

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
            G   G  ++++            + +  R    +  T+    AD+ +            
Sbjct: 83  TGVAQGTTSLMVWTACATAPRQSMVFVRGRATTSMVETVPAPSADAEL------------ 130

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
                +Q   R +E+S T L Q+G + +   S+  +       G       VT+      
Sbjct: 131 --PSQVQTDIRFIEVSRTKLKQAGTSIFGKGSNNFLF------GAPGTVPGVTV------ 176

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                             +    +            F++           +L+ALE +  
Sbjct: 177 ------------------TPGTVSGALPSIPLAESAFNIVWGGGSSKVLGILNALENSGF 218

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
             TLA P+L A+SGQSASF +GG+      ++     S+   ++GV L  TPTV+   RI
Sbjct: 219 AYTLARPSLVALSGQSASFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTLTPTVVGRNRI 278

Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L++  EVSE      I +    +P  R R+ DT++ L  G + V++GL+        E 
Sbjct: 279 LLKVAPEVSELDFTSEISIAGTTVPIIRTRRTDTSIALADGESFVVSGLINTSNISTVEK 338

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDA 440
            P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A      S P +          
Sbjct: 339 FPGLGDIPILGAFFRSSKIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFP 398

Query: 441 KAFFFNRVN 449
           + +F    +
Sbjct: 399 RLYFLENGD 407


>gi|330873641|gb|EGH07790.1| type II/III secretion system protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 416

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 97/443 (21%), Positives = 170/443 (38%), Gaps = 55/443 (12%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L     +    P    A+ +   ++ +       + I       ++  V +  + V DP
Sbjct: 12  GLLVLLFTALSAPSAWAASGSCAGLAAMPAA----MEIDQGIQQNVRSSVAITRIAVGDP 67

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
             ADV V+      L G   G  ++++            + + R  A   M  R     +
Sbjct: 68  KIADVHVNGSDGFLLTGVAQGTTSLMVWTTCASAPRQSMVFV-RGRATASMVERADAPSA 126

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
             ++               +Q   R VE+S T L ++  + +   S+  +       G  
Sbjct: 127 EAQL------------PSQVQTDIRFVEVSRTRLKEASISIFGKGSNNFLF------GAP 168

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
                VT+                        +    +           +F++       
Sbjct: 169 GTVPGVTV------------------------TPGTVSGTLPSIPLNNSNFNIVWGGGSS 204

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
               +L+A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV
Sbjct: 205 KVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGV 264

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            L  TPT++   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V+
Sbjct: 265 RLTLTPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVV 324

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LS 428
           +GL+        +  P L  IPILGA FR+S+  R E E+ +  TP LV+P+A+     S
Sbjct: 325 SGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAVNAQLPS 384

Query: 429 RPDDHYS--VEDDAKAFFFNRVN 449
            P +          +  F  R N
Sbjct: 385 LPGEGLRNYDPSFPRLLFMERGN 407


>gi|330976799|gb|EGH76834.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 416

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 94/443 (21%), Positives = 169/443 (38%), Gaps = 57/443 (12%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L +   +    P    A+ +   ++ +       + I       ++  V +  + V DP 
Sbjct: 13  LLALVIAALCAPGAWAASGSCAGLAAMPAA----VEIDQGIQQEVRSAVPITRIAVGDPK 68

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADS 134
            ADV V+      L G   G  ++++            + +  R    +  ++    AD+
Sbjct: 69  IADVHVNGTDGFLLTGVAQGTTSLMVWTACASAPRQSMVFVRGRATTAMVESVTAPSADA 128

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
            +                 +Q   R +E+S T L ++  + +   SS  +          
Sbjct: 129 QL--------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGV 174

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            VT                                              +F++       
Sbjct: 175 NVTPGAV------------------------------GGITPSIPLNNSNFNIVWGGGSS 204

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
               +++A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV
Sbjct: 205 KVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGV 264

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            L  TPTV+   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V+
Sbjct: 265 RLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVV 324

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLS 428
           +GL+        +  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A   R  S
Sbjct: 325 SGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPS 384

Query: 429 RPDDHYSV--EDDAKAFFFNRVN 449
            P +          + +F    +
Sbjct: 385 LPGEALRTYDPSFPRLYFLENGD 407


>gi|66047618|ref|YP_237459.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258325|gb|AAY39421.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae B728a]
          Length = 416

 Score =  226 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 94/443 (21%), Positives = 169/443 (38%), Gaps = 57/443 (12%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L +   +    P    A+ +   ++ +       + I       ++  V +  + V DP 
Sbjct: 13  LLALVIATLCAPGAWAASGSCAGLAAMPAA----VEIDQGIQQEVRSAVPITRIAVGDPK 68

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADS 134
            ADV V+      L G   G  ++++            + +  R    +  ++    AD+
Sbjct: 69  IADVHVNGTDGFLLTGVAQGTTSLMVWTACASAPRQSMVFVRGRATTAMVESVTAPSADA 128

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
            +                 +Q   R +E+S T L ++  + +   SS  +          
Sbjct: 129 QL--------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGV 174

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            VT                                              +F++       
Sbjct: 175 NVTPGAV------------------------------GGITPSIPLNNSNFNIVWGGGSS 204

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
               +++A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV
Sbjct: 205 KVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGV 264

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            L  TPTV+   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V+
Sbjct: 265 RLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVV 324

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLS 428
           +GL+        +  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A   R  S
Sbjct: 325 SGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPS 384

Query: 429 RPDDHYSV--EDDAKAFFFNRVN 449
            P +          + +F    +
Sbjct: 385 LPGEALRTYDPSFPRLYFLENGD 407


>gi|92113782|ref|YP_573710.1| type II and III secretion system protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91796872|gb|ABE59011.1| type II and III secretion system protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 483

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 101/448 (22%), Positives = 175/448 (39%), Gaps = 58/448 (12%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
            + + +     L     V    + D   A   +   R + L G   G  ++ +       
Sbjct: 67  TLRLDIGDQQRLVFERPVSRTALGDGDIASAQMVDARQLLLTGLAAGTTSLSVWRDGRDA 126

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
                + +                +S   +   +DT  L G   ++    +A        
Sbjct: 127 PQRYRVSVRP--RGARGM------ESEYTLADGTDTPTLAGESESLARHAQAR------- 171

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------- 218
                   +    +  ++     G  QV   + + EV R  L+  GF             
Sbjct: 172 --------SRLGDQNTVDATRQTGPVQVQTDIRVVEVNRSKLQSAGFFFGKNNGGNTLIG 223

Query: 219 --ITGSSSGP-------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
              +G+  G        S+ F+   G  F +  G +++       S   V+ AL      
Sbjct: 224 VGTSGALGGAEAVGDSFSEGFSFLTGSGFQTGNGGYNIVVGNANDSVLGVISALRSNGFA 283

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
            TLAEP+L  +SGQSASF +GG+  +  VS+  G   +   ++GV L  TPTVL    I 
Sbjct: 284 YTLAEPSLVTLSGQSASFLAGGEFPFP-VSNDDGDVRIDFKEFGVRLQLTPTVLDSNSIM 342

Query: 330 LRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L++  EVSE         +   +P+  VR+ DT+V+L  G +++++GL+ +   Q  +  
Sbjct: 343 LKVAPEVSELDFTQGVEASGVAVPALNVRRTDTSVQLGDGESLIISGLVSNSTMQTVDKF 402

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAF 443
           P L  +P++GA FR++RF  +  E+ +  TP LV P+A        P +     D +   
Sbjct: 403 PGLGDLPVIGAFFRSTRFETQNKELVMIVTPHLVAPMAAGAPRPELPGEALRRYDPSYLE 462

Query: 444 FFNRVNKIYGPKEASEVEGQNYKGAIGF 471
                   + P++A  +E     G +GF
Sbjct: 463 LL------FDPQDAESLERL---GNVGF 481


>gi|330953053|gb|EGH53313.1| type II and III secretion system protein [Pseudomonas syringae Cit
           7]
          Length = 416

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 94/441 (21%), Positives = 168/441 (38%), Gaps = 54/441 (12%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           S    V        A AA  + + +       + I       ++  V +  + V DP  A
Sbjct: 12  SLLALVIAALCAPGAWAASGSCAGLAAMPA-AVEIDQGIQQEVRSAVPITRIAVGDPKIA 70

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNI 136
           DV V+      L G   G  ++++            + +  R    +  ++    AD+ +
Sbjct: 71  DVHVNGTDGFLLTGVAQGTTSLMVWTACASAPRQSMVFVRGRATTAMVESVTAPSADAQL 130

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
                            +Q   R +E+S T L ++  + +   S+  +           V
Sbjct: 131 --------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNV 176

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
                                         +    +           +F++         
Sbjct: 177 ------------------------------TPGTVSGTRPNIPLNNSNFNIVWGGGSSKV 206

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
             +++A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L
Sbjct: 207 LGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRL 266

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
             TPTV+   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V++G
Sbjct: 267 TLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSG 326

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRP 430
           L+        +  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A   R  S P
Sbjct: 327 LISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPSLP 386

Query: 431 DDHYSV--EDDAKAFFFNRVN 449
            +          + +F    +
Sbjct: 387 GEGLRTYDPSFPRLYFLENGD 407


>gi|91777217|ref|YP_552425.1| putative type II and III secretion system outermembrane protein,
           secretin [Burkholderia xenovorans LB400]
 gi|91689877|gb|ABE33075.1| Putative type II and III secretion system outermembrane protein,
           secretin [Burkholderia xenovorans LB400]
          Length = 595

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 99/450 (22%), Positives = 181/450 (40%), Gaps = 37/450 (8%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           +R   +++   L       A     + A+AA    +D      + + +   +V IL +P 
Sbjct: 12  RRVLPSVLVGMLLCEAAPAALAQTAQAAHAAYTAATDSPSASTRVLEMFRGEVRILHIPG 71

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDILIERDI 120
            ++ + + +       V    ++ L G+  G  ++++    G      +      +   +
Sbjct: 72  TIKRIAIGNGKLLTANVV-DGSLMLLGEQDGITSLVVWNDKGIALQTTVRIAKAEVNASL 130

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             L   LR       +R++ +   +VL G++                   +G  + A   
Sbjct: 131 EQLRAVLRSVAG---LRIDAIGSNIVLSGVI---------------HRDMAGTVKAATQE 172

Query: 181 SKKVMNLLNIAGED----QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADF 234
            K V++       D     V  KV I EV R   + +G     +  G   G + S A   
Sbjct: 173 MKNVVDTTTFDEGDALRKTVHFKVQIMEVTRTGQRNLGIAWDSAFRGPQIGGAASVATG- 231

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             K ++ G  + + G+    +  + ++          LA P L   SG +ASF +GGQ  
Sbjct: 232 AAKAITAGTSYFLAGIAS--NITSQINFAVENGDAYVLAAPELNTKSGGTASFLAGGQVP 289

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
               S + G TS+   DYG+ L   P V +   I   + TE+S+    V    MP +  R
Sbjct: 290 IPQ-SGALGTTSIEYKDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYAGMPGFLTR 348

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              + + + +G T+ ++GL+  D      G+P LS++PI+G LFR+ RF  +++++ I  
Sbjct: 349 NTSSDISMRAGETLAISGLVSADAANDSNGMPFLSQVPIIGQLFRSDRFRAKKSDLVIFV 408

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           TP +  P    +LS   D  +  D     F
Sbjct: 409 TPVISDP----ELSPNTDLLARADKLDENF 434


>gi|307726635|ref|YP_003909848.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
 gi|307587160|gb|ADN60557.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
          Length = 642

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 100/457 (21%), Positives = 191/457 (41%), Gaps = 43/457 (9%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           +R  +R   +++   L           P+  A +     +D      + + +   +V IL
Sbjct: 8   VRLRRRVLPSVLVGVLLCEAA------PLTLAQSIYSPAADDASAASRVLEMFRGEVRIL 61

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDI---LI 116
            VP  ++ + + +       V     + L G+  G  ++++    G      + I    +
Sbjct: 62  HVPGTIKRIAIGNGKLITANVVDGN-LMLLGEQDGMTSLVVWNEKGIALQTTVRIAKSEV 120

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
              +  L   L+     S +R++ +   +VL G++      +  V + ++          
Sbjct: 121 NASLQQLRAVLKSV---SGLRIDAIGSNIVLSGVI-----HRDMVAVVKS---------- 162

Query: 177 ANSSSKKVMNLLNI----AGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSF 230
           A    K V++   +    A    V  KV I EV R+  + +G     +  G   G + S 
Sbjct: 163 ATQDMKNVVDTTTVDEGEALRKTVHFKVQIMEVTRNAQRNLGIAWDSAFRGPQIGGAASV 222

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           A     K V+ G  + + G+    +  + ++          LA P L   SG +ASF +G
Sbjct: 223 ATG-AAKAVTAGTSYFLAGIAS--NISSQINFAVNNGDAFILAAPELNTRSGGTASFLAG 279

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           GQ      S + G T+V   DYGV L   P V + G I   + TE+S+    V+ G +P 
Sbjct: 280 GQVPIPQ-SGALGTTNVMYKDYGVKLSINPVVDANGIISAHLTTEISQIDPTVSYGGLPG 338

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R   + + + +G T+ ++GL+  D     +G+P L +IP++G LFR+  F  +++++
Sbjct: 339 FLTRSTSSDISMRTGETLAISGLISADAVNDSDGMPFLGQIPVIGQLFRSDSFRAKKSDL 398

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
            I  TP +  P    +L+   D  +  D   + + N+
Sbjct: 399 VIFVTPLISDP----ELAPNTDLLARADRIDSGYVNK 431


>gi|323529159|ref|YP_004231311.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
 gi|323386161|gb|ADX58251.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
          Length = 597

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 93/437 (21%), Positives = 179/437 (40%), Gaps = 37/437 (8%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           R  +R   +++   L           P+  A  A  + +D        + +   +V IL+
Sbjct: 9   RLRRRVLPSVLIGVLLCEAA------PLALAQGASASATDDASATTHVLEMFRGEVRILR 62

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDILIE 117
           +P  ++ + + +       V     + L G+  G  ++++    G      +      + 
Sbjct: 63  LPGTIKRIAIGNGKLITANVVDGN-LMLLGEQDGMTSLVVWNEKGIALQTTVRIAKAEVN 121

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
             +  L   L+     S ++++ +   +VL G+V      +  V + ++          A
Sbjct: 122 ASLQQLRAVLKSV---SGLQIDAIGSNIVLSGVV-----HRDMVAVIKS----------A 163

Query: 178 NSSSKKVMNLLNI----AGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAA 232
               K V++   +    A    V  KV I EV R+  +++G    S          +  A
Sbjct: 164 TQDMKNVIDTTTVDEGEALRKTVHFKVQIMEVTRNTQRKLGIAWDSAFRGPQIGGAASVA 223

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
               K V+ G  + + G+    +  + ++          LA P L   SG +ASF +GGQ
Sbjct: 224 SGAAKAVTAGTSYFLAGIAS--NISSQINFAVNNGDAFILAAPELNTKSGGTASFLAGGQ 281

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
                 S + G T+V   DYGV L   P V + G I   + TE+S+    V+ G +P + 
Sbjct: 282 VPIPQ-SGALGTTNVMYKDYGVKLSINPVVDANGIISAHLTTEISQIDPTVSYGGLPGFL 340

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   + + + +G T+ ++GL+  D     +G+P L +IP++G LFR+  F  +++++ I
Sbjct: 341 TRSTSSDISMRTGETLAISGLISADSVNDSDGMPFLGQIPVIGQLFRSDSFRAKKSDLVI 400

Query: 413 AATPFLVKPVAMRDLSR 429
             TP +  P    +   
Sbjct: 401 FVTPLISDPELAPNADL 417


>gi|213968016|ref|ZP_03396162.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato T1]
 gi|301383668|ref|ZP_07232086.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059963|ref|ZP_07251504.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302131629|ref|ZP_07257619.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213927359|gb|EEB60908.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato T1]
          Length = 419

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 96/408 (23%), Positives = 161/408 (39%), Gaps = 48/408 (11%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + I       ++  V +  + V DP  ADV V+      L G   G  ++++        
Sbjct: 43  MEIDQGIQQNVRSSVAITRIAVGDPKIADVHVNGNDGFLLTGVAQGTTSLMVWTTCASAP 102

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
               + + R  A   M  R     +      +   V         Q   R VE+S T L 
Sbjct: 103 RQSMVFV-RGRATASMVERANAPSAEAHEAQLPSQV---------QTDIRFVEVSRTRLK 152

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
           ++  + +   S+  +       G       VT+                        +  
Sbjct: 153 EASISIFGKGSNNFLF------GAPGTVPGVTV------------------------TPG 182

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +          G+F++           +L+A+E +    TLA P+L A++GQSASF +
Sbjct: 183 TVSGTLPSIPLNNGNFNIVWGGGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLA 242

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNA 345
           GG+      +      S+   ++GV L  TPT++   RI L++  EVSE      I +  
Sbjct: 243 GGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLKVAPEVSELDFSAGITIAG 302

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+  +R+ DT++ L  G + V++GL+        +  P L  IPILGA FR+S+  R
Sbjct: 303 TTVPALNIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQR 362

Query: 406 EETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFNRVN 449
            E E+ +  TP LV+P+A+     S P +          +  F  R N
Sbjct: 363 NERELLMIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLLFMERGN 410


>gi|28871966|ref|NP_794585.1| type II/III secretion system protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28855219|gb|AAO58280.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331014708|gb|EGH94764.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 419

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 96/408 (23%), Positives = 161/408 (39%), Gaps = 48/408 (11%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + I       ++  V +  + V DP  ADV V+      L G   G  ++++        
Sbjct: 43  MEIDQGIQQNVRSSVAITRIAVGDPKIADVHVNGSDGFLLTGVAQGTTSLMVWTTCASAP 102

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
               + + R  A   M  R     +      +   V         Q   R VE+S T L 
Sbjct: 103 RQSMVFV-RGRATASMVERANAPSAEAHEAQLPSQV---------QTDIRFVEVSRTRLK 152

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
           ++  + +   S+  +       G       VT+                        +  
Sbjct: 153 EASISIFGKGSNNFLF------GAPGTVPGVTV------------------------TPG 182

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +          G+F++           +L+A+E +    TLA P+L A++GQSASF +
Sbjct: 183 TVSGTLPSIPLNNGNFNIVWGGGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLA 242

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNA 345
           GG+      +      S+   ++GV L  TPT++   RI L++  EVSE      I +  
Sbjct: 243 GGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLKVAPEVSELDFSAGITIAG 302

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+  +R+ DT++ L  G + V++GL+        +  P L  IPILGA FR+S+  R
Sbjct: 303 TTVPALNIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQR 362

Query: 406 EETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFNRVN 449
            E E+ +  TP LV+P+A+     S P +          +  F  R N
Sbjct: 363 NERELLMIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLLFMERGN 410


>gi|257483347|ref|ZP_05637388.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331012566|gb|EGH92622.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 416

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 170/425 (40%), Gaps = 54/425 (12%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           AA  + + +       + I       ++ PV +  + V DP  ADV V+      L G  
Sbjct: 28  AASGSCAGLAAMPA-AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVA 86

Query: 94  VGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
            G  ++++            + +  R  A +  ++    AD+ +                
Sbjct: 87  QGTTSLMVWTACATAPRQSMVFVRGRATASMIESVTAPSADAEL--------------PS 132

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
            +Q   R +E+S T L ++  + +   S+  +           VT               
Sbjct: 133 QVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTP-------------- 178

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                   G+ SG   S   +          +F++           +L+A+E +     L
Sbjct: 179 --------GTVSGTRPSIPLN--------NSNFNIVWGGGSSKVLGMLNAMENSGYAYIL 222

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           A P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI L++
Sbjct: 223 ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 282

Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
             EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+           P L
Sbjct: 283 APEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPGL 342

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDAKAFF 444
             IPILGA FRNS+  R+E E+ +  TP LV+P+A      S P +          + +F
Sbjct: 343 GDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLYF 402

Query: 445 FNRVN 449
               +
Sbjct: 403 LENGD 407


>gi|298488959|ref|ZP_07006982.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156457|gb|EFH97554.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 416

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 99/429 (23%), Positives = 172/429 (40%), Gaps = 54/429 (12%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89
           + A AA  + + +       + I       ++ PV +  + V  P  ADV V+      L
Sbjct: 24  QSAWAASGSCAGLAAMPA-AVEIDQGIQQEVRSPVAITRIAVGAPKIADVHVNGTDGFLL 82

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
            G   G  ++++            + +  R  A +  ++    AD+ +            
Sbjct: 83  TGVAQGTTSLMVWTACATAPRQSMVFVRGRATASMIESVTAPSADAEL------------ 130

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
                +Q   R +E+S T L ++  + +   S+  +           VT           
Sbjct: 131 --PSQVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTP---------- 178

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                       G+ SG   S   +          +F++           +L+A+E +  
Sbjct: 179 ------------GTVSGTRPSIPLN--------NSNFNIVWGGGSSKVLAMLNAMENSGY 218

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
             TLA P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI
Sbjct: 219 AYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRI 278

Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L++  EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+          
Sbjct: 279 LLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVSK 338

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDA 440
            P L  IPILGA FRNS+  R+E E+ +  TP LV+P+A      S P +          
Sbjct: 339 FPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFP 398

Query: 441 KAFFFNRVN 449
           + +F    +
Sbjct: 399 RLYFLENGD 407


>gi|330873797|gb|EGH07946.1| type II/III secretion system protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 384

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 100/412 (24%), Positives = 165/412 (40%), Gaps = 53/412 (12%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + + I       ++ PV +  + V DP  ADV V+      L G   G  ++++     
Sbjct: 8   QRLVEIDQGIQQEVRSPVAIPRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACA 67

Query: 107 KQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  + +  R  A +  T+    AD+ +                 +Q   R +E+S 
Sbjct: 68  TAPRQSMVFVRGRATASMVETVPAPSADAEL--------------PSQVQTDIRFIEVSR 113

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T L Q+G + +   S+  +       G       VT+                       
Sbjct: 114 TKLKQAGTSIFGKGSNNFLF------GAPGTVPGVTV----------------------- 144

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            +    +            F++           +L+ALE +    TLA P+L A+SGQSA
Sbjct: 145 -TPGTVSGALPSIPLAESAFNIVWGGGSSKVLGILNALENSGFAYTLARPSLVALSGQSA 203

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----I 341
           SF +GG+      ++     S+   ++GV L  TPTV+   RI L++  EVSE      I
Sbjct: 204 SFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTLTPTVVGRNRILLKVAPEVSELDFTSEI 263

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +P  R R+ DT++ L  G + V++GL+        E  P L  IPILGA FR+S
Sbjct: 264 SIAGTTVPIIRTRRTDTSIALADGESFVVSGLINTSNISTVEKFPGLGDIPILGAFFRSS 323

Query: 402 RFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDAKAFFFNRVN 449
           +  R+E E+ +  TP LV+P+A      S P +          + +F    +
Sbjct: 324 KIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLYFLENGD 375


>gi|330989176|gb|EGH87279.1| type II and III secretion system protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 416

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 99/425 (23%), Positives = 171/425 (40%), Gaps = 54/425 (12%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           AA  + + +       + I       ++ PV +  + V DP  ADV V+      L G  
Sbjct: 28  AASGSCAGLAAMPA-AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVA 86

Query: 94  VGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
            G  ++++            + +  R  A +  ++    AD+ +                
Sbjct: 87  QGTTSLMVWTACATAPRQSMVFVRGRATASMIESVTAPSADAEL--------------PS 132

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
            +Q   R +E+S T L ++  + +   S+  +           VT               
Sbjct: 133 QVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTP-------------- 178

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                   G+ SG   S   +          +F++           +L+A+E +    TL
Sbjct: 179 --------GTVSGTRPSIPLN--------NSNFNIVWGGGSSKVLGMLNAMENSGYAYTL 222

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           A P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI L++
Sbjct: 223 ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 282

Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
             EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+           P L
Sbjct: 283 APEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPGL 342

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDAKAFF 444
             IPILGA FRNS+  R+E E+ +  TP LV+P+A      S P +          + +F
Sbjct: 343 GDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLYF 402

Query: 445 FNRVN 449
               +
Sbjct: 403 LENGD 407


>gi|330811024|ref|YP_004355486.1| type II secretion system protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379132|gb|AEA70482.1| putative type II secretion system protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 407

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 93/390 (23%), Positives = 146/390 (37%), Gaps = 67/390 (17%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
            +G      L++   V  + V DP  ADV         L G   G  ++++     K   
Sbjct: 44  EVGQGLQSELRILAPVTKLAVGDPKIADVQPSGNDAFILTGLAPGATSLMVWTDCSKIPR 103

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
              + ++                             L G      +    +         
Sbjct: 104 QSMVFVKGRATE-----------------------ALTGAASIPSEDPMLLA-------- 132

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKS 229
                                   QV   +   EV R  LK+         G+    S  
Sbjct: 133 ------------------------QVQTDIRFVEVSRTKLKEASTSIFGTRGNFLFGSPR 168

Query: 230 FAADFGG----KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                GG            F++     +     +++ALE +    TLA P+L A+SGQSA
Sbjct: 169 TLPTVGGIVRPSLPVNNDMFNLSFATGKTLL--MINALEGSGFAYTLARPSLVALSGQSA 226

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVI 341
           SF +GG+      S+ +   S+   ++G+ L  TPTV+   RI L++  EVSE      +
Sbjct: 227 SFLAGGEVPIPVPSAGSDNVSIEYKEFGIRLTLTPTVIGKNRIALKVAPEVSELDFTNAV 286

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +P+  VR+ DT++ L  G + V++GL+           P L  IPILGA FR++
Sbjct: 287 NIAGTLVPALTVRRTDTSIALADGESFVISGLISTRNSSQVNKFPGLGDIPILGAFFRDN 346

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPD 431
             NREE E+ +  TP LV+P+A  D   P 
Sbjct: 347 SINREERELLMIVTPHLVQPLAA-DAQLPT 375


>gi|289625312|ref|ZP_06458266.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647837|ref|ZP_06479180.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867146|gb|EGH01855.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330871034|gb|EGH05743.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 416

 Score =  222 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 99/425 (23%), Positives = 171/425 (40%), Gaps = 54/425 (12%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           AA  + + +       + I       ++ PV +  + V DP  ADV V+      L G  
Sbjct: 28  AASGSCAGLAAMPA-AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVA 86

Query: 94  VGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
            G  ++++            + +  R  A +  ++    AD+ +                
Sbjct: 87  QGTTSLMVWTSCATAPRQSMVFVRGRATASMIESVTAPSADAEL--------------PS 132

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
            +Q   R +E+S T L ++  + +   S+  +           VT               
Sbjct: 133 QVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTP-------------- 178

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                   G+ SG   S   +          +F++           +L+A+E +    TL
Sbjct: 179 --------GTVSGTRPSIPLN--------NSNFNIVWGGGSSKVLGMLNAMENSGYAYTL 222

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           A P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI L++
Sbjct: 223 ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 282

Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
             EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+           P L
Sbjct: 283 APEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPGL 342

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDAKAFF 444
             IPILGA FRNS+  R+E E+ +  TP LV+P+A      S P +          + +F
Sbjct: 343 GDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLYF 402

Query: 445 FNRVN 449
               +
Sbjct: 403 LENGD 407


>gi|330963438|gb|EGH63698.1| type II/III secretion system protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 416

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 96/441 (21%), Positives = 169/441 (38%), Gaps = 55/441 (12%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L     +    P    A+ +   ++ +       + I       ++  V +  + V DP
Sbjct: 12  GLLVLLFTALSAPSAWAASGSCAGLAAMPAA----MEIDQGIQQNVRSSVAITRIAVGDP 67

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
             ADV V+      L G   G  ++++            + + R  A   M  R     +
Sbjct: 68  KIADVHVNGIDGFLLTGVAQGTTSLMVWTTCASAPRQSMVFV-RGRATASMVERADAPSA 126

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
             ++               +Q   R VE+S T L ++  + +   S+  +       G  
Sbjct: 127 EAQL------------PSQVQTDIRFVEVSRTRLKEASISIFGKGSNNFLF------GAP 168

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
                VT+                        +    +           +F++       
Sbjct: 169 GTVPGVTV------------------------TPGTVSGTLPSIPLNNSNFNIVWGGGSS 204

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
               +L+A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV
Sbjct: 205 KVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGV 264

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            L  TPT++   RI L++  EVSE      I +    +P+  +R+ DT++ L  G + V+
Sbjct: 265 RLTLTPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVV 324

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LS 428
           +GL+        +  P L  IPILGA FR+S+  R E E+ +  TP LV+P+A+     S
Sbjct: 325 SGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAVNAQLPS 384

Query: 429 RPDDHYS--VEDDAKAFFFNR 447
            P +          +  F  R
Sbjct: 385 LPGEGLRNYDPSFPRLLFMER 405


>gi|330887974|gb|EGH20635.1| type II and III secretion system protein [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 416

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 170/425 (40%), Gaps = 54/425 (12%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           AA  + + +       + I       ++ PV +  + V DP  ADV V+        G  
Sbjct: 28  AASGSCAGLAAMPA-AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLFTGVA 86

Query: 94  VGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
            G  ++++            + +  R  A +  ++    AD+ +                
Sbjct: 87  QGTTSLMVWTACATAPRQSMVFVRGRATASMIESVTAPSADAEL--------------PS 132

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
            +Q   R +E+S T L ++  + +   S+  +           VT               
Sbjct: 133 QVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTP-------------- 178

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                   G+ SG   S   +          +F++           +L+A+E +    TL
Sbjct: 179 --------GTVSGTRPSIPLN--------NSNFNIVWGGGSSKVLGMLNAMENSGYAYTL 222

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           A P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI L++
Sbjct: 223 ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 282

Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
             EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+           P L
Sbjct: 283 APEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPGL 342

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDAKAFF 444
             IPILGA FRNS+  R+E E+ +  TP LV+P+A      S P +          + +F
Sbjct: 343 GDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLYF 402

Query: 445 FNRVN 449
               +
Sbjct: 403 LENGD 407


>gi|302185189|ref|ZP_07261862.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae 642]
          Length = 416

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 94/409 (22%), Positives = 165/409 (40%), Gaps = 53/409 (12%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + I       ++  V +  + V DP  ADV V+      L G   G  ++++        
Sbjct: 43  VEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACASAP 102

Query: 110 LNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
               + +  R    +  ++    AD+ +                 +Q   R +E+S T L
Sbjct: 103 RQSMVFVRGRATTAMVESVTAPSADAQL--------------PSQVQTDIRFIEVSRTKL 148

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
            ++  + +   S+  +           VT                       G+ SG   
Sbjct: 149 KEASTSIFGKGSNNFLFGAPGTVPGVNVTP----------------------GTVSGTRP 186

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           S   +          +F++           +++A+E +    TLA P+L A++GQSASF 
Sbjct: 187 SIPLN--------NSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFL 238

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVN 344
           +GG+      +      S+   ++GV L  TPTV+   RI L++  EVSE      I + 
Sbjct: 239 AGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIA 298

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+  +R+ DT++ L  G + V++GL+        +  P L  IPILGA FR+S+  
Sbjct: 299 GTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQ 358

Query: 405 REETEIFIAATPFLVKPVA--MRDLSRPDDHYSV--EDDAKAFFFNRVN 449
           R+E E+ +  TP LV+P+A   R  S P +          + +F    +
Sbjct: 359 RDERELLMIVTPHLVQPLAANARLPSLPGEALRTYDPSFPRLYFLENGD 407


>gi|114321311|ref|YP_742994.1| type II and III secretion system protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227705|gb|ABI57504.1| type II and III secretion system protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 428

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 107/437 (24%), Positives = 176/437 (40%), Gaps = 80/437 (18%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89
             A A    ++ V +   K +  G++K   L  P  V  V V DP  AD+ +   R + L
Sbjct: 32  NVAQAGCDRVNSV-LPHVKHLDAGVHK--RLTFPTRVTRVAVGDPDVADLEIIGDRELLL 88

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149
            G + G  +V +      +     +++                   ++V     +     
Sbjct: 89  TGVDGGLTSVYVWTTCNDRPDRTLVIVSA--------------REALQVHEAEGS----- 129

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
                    +  +L                               QV   + + EV R  
Sbjct: 130 -------RDQVADL-----------------------------PMQVQADIRLVEVSRSK 153

Query: 210 LKQI-----------GFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           L+++            F     GS SG  +     D      +    F++        F 
Sbjct: 154 LREMGGSILGRRGSANFLFGGPGSVSGSVAPGGVGDANVGLPASDSGFNIFYGGGGSRFL 213

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
           ++++ALE      TLAEP+L A+SGQSA+F +GG+      SS +   ++   ++GV + 
Sbjct: 214 SMINALEANDFAYTLAEPSLVALSGQSATFHAGGEFPVPVPSSGSDTINIRFKEFGVRVS 273

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           FTPTV+   R+ L++  EVSE        +    +P  RVR+ DTTV L  G + V++GL
Sbjct: 274 FTPTVIDGDRLTLKVAPEVSELDDTSGIEIAGTRVPGLRVRRTDTTVTLGDGESFVISGL 333

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP--- 430
           + + +    +  P L  IP+LGA FR+SR + E+ E+ +  TP LV+P+A RD  +P   
Sbjct: 334 VSNHMASQVDKFPGLGNIPVLGAFFRSSRVSEEDRELLMIVTPHLVQPLA-RDAEQPPLP 392

Query: 431 --DDHYSVEDDAKAFFF 445
             D         + FF 
Sbjct: 393 GEDLRDYRPSWTEQFFL 409


>gi|311105392|ref|YP_003978245.1| type II and III secretion system family protein 1 [Achromobacter
           xylosoxidans A8]
 gi|310760081|gb|ADP15530.1| bacterial type II and III secretion system family protein 1
           [Achromobacter xylosoxidans A8]
          Length = 456

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 93/400 (23%), Positives = 167/400 (41%), Gaps = 42/400 (10%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
           +S       ++I + + +  IL  P  V+ V + +      +    R + +F +  G ++
Sbjct: 16  VSPAAWPADEEIELQVGETRILSHPG-VKRVAIGNGQVIGAIEAEGREVIVFARAEGVSS 74

Query: 99  VILIGHDGKQMLNLDILIER-DIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQD 156
           + +   +G +    ++ +       L   +   +A     R   V   +++ G   +  D
Sbjct: 75  LHVW-ANGARAKAYELRVVPAGAPRLRAEVEALLARIPGARSTEVGGRILIEGDDLSDDD 133

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLKVTIAEVRRDILKQIGF 215
             R   L++ +                V++    +  +  V L V + E+    L+ +G 
Sbjct: 134 RLRITALADRY--------------PAVLDFTGQVGWDRMVQLDVQVVEIPTSKLRDLGV 179

Query: 216 QHSITGSSSGPSKSFAADFG----------------GKFVSEGGDFSVKGVLDRFSFETV 259
           +     S  G +   A D G                G+  S  G F V  +L      + 
Sbjct: 180 RWD-GMSQGGINAGLAWDAGSRGRVSRPGEEIIETMGRVSSPAGYFGVNALL-----SSR 233

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           +  L ++     LA+P L A SG SA+F +GG+  Y + + + G ++     YGV+L  T
Sbjct: 234 IAMLAQSGEAVMLAQPQLLARSGASATFLAGGEVPY-SSTDTRGNSTTLFKPYGVMLRIT 292

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P V   G I   I+ E S     ++    P+ R R+A T   + SG T+V+ G L  +  
Sbjct: 293 PRVDRNGIIRSLIEVEASSVDNALSVPGGPALRTRRASTEFNVRSGDTLVIGGFLSRERD 352

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +  +G+P L  IP+LGALF + R+   ETE+ I  TP L+
Sbjct: 353 EASDGLPWLKDIPVLGALFSSRRYQLRETELAIFVTPKLI 392


>gi|118581113|ref|YP_902363.1| type II and III secretion system protein [Pelobacter propionicus
           DSM 2379]
 gi|118503823|gb|ABL00306.1| type II and III secretion system protein [Pelobacter propionicus
           DSM 2379]
          Length = 386

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 95/402 (23%), Positives = 163/402 (40%), Gaps = 54/402 (13%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
            G +  + +NK +++ +    + V +++P  AD+++ +PR + L G  +G  ++I+    
Sbjct: 28  AGVRTQVIVNKSVLVNLKNPAERVSIANPAIADLLLITPRQIQLNGLALGATSLIVWEKG 87

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G++ L  D+ +  +    +                    V+L   V          ++ +
Sbjct: 88  GEKPLFFDVNVVGNTNIDDSQ-----------------QVLLQVKVA---------QIDK 121

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T L   G +    + +    + +                        IG   + + S+SG
Sbjct: 122 TALKNLGVSFLVKNQNANGFSNM------------------------IGAPSTSSTSASG 157

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                 A+      S    +++           V+ AL      + LAEP L   SGQ  
Sbjct: 158 DGTISTANGIIDGFSSLNPYTMGITHFPSGVSAVIKALATKGMAKILAEPNLVVKSGQKG 217

Query: 286 SFTSGGQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIG 342
            F +G +  +  +  + ST   S+   + GV L+F P V+  G I L +   EVS     
Sbjct: 218 EFFAGSRIPFSVLENTGSTSTPSIRWEEVGVKLNFKPFVMESGTIALELDPVEVSNIQGT 277

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +     P    R   T+ EL  G ++VLAGLL+D+  +    +PLL  IPILGALFR + 
Sbjct: 278 LETNGYPVIDTRTIKTSAELRDGESLVLAGLLRDETYKSISKVPLLGDIPILGALFRTTE 337

Query: 403 FNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAF 443
             ++ETE+    TP LV P V    +  P D     +  K F
Sbjct: 338 NEQKETELVFFITPKLVMPEVPGVKVELPTDKQLTPEQEKEF 379


>gi|187921506|ref|YP_001890538.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
 gi|187719944|gb|ACD21167.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
          Length = 561

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 95/435 (21%), Positives = 171/435 (39%), Gaps = 37/435 (8%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
              + +  P   A               + + +   +V IL VP  ++ + + +      
Sbjct: 21  GMLLCEAAPAALAQVGYSAAMASPSASTRVLEMFRGEVRILHVPGTIKRIAIGNGKLVTA 80

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDILIERDIAHLEMTLRRFIADSN 135
            V    ++ L G+  G  ++++    G      +      +   +  L   L+     S 
Sbjct: 81  NVV-DGSLMLLGERDGITSLVVWNEKGIALQTTVRIAKAEVSASVEQLRAVLQSV---SG 136

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED- 194
           + ++ +   +VL G++                   +G  + A    + V++   +   D 
Sbjct: 137 LHIDAIGSNIVLSGVI---------------HRDMTGIVKAATQDMQNVIDTTKVDEGDA 181

Query: 195 ---QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
               V  KV I EV R   + +G     +  G   G + S A     K V+ G  + + G
Sbjct: 182 LRKTVHFKVQIMEVTRTGQRNLGIAWDSAFKGPQIGGAASVATG-AAKAVTAGTSYFLAG 240

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
           +    +  + ++          LA P L   SG +ASF +GG       S + G TSV  
Sbjct: 241 IAS--NITSQINFAVENGDAYVLAAPELNTKSGGTASFLAGGTVPIPQ-SGALGTTSVEY 297

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            DYG+ L   P V +   I   + TE+S+    V  G MP +  R   + + + +G T+ 
Sbjct: 298 RDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYGGMPGFLTRNTTSDISMRAGETLA 357

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++GL+  D      G+P LSK+PI+G LFR+  F  +++++ I  TP +  P    +LS 
Sbjct: 358 ISGLVSADAANDTTGMPFLSKVPIIGQLFRSDAFRAKKSDLVIFVTPVISDP----ELSP 413

Query: 430 PDDHYSVEDDAKAFF 444
             D  +  D     F
Sbjct: 414 NADLLARADRLDKSF 428


>gi|296158514|ref|ZP_06841344.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
 gi|295891082|gb|EFG70870.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
          Length = 590

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 92/415 (22%), Positives = 170/415 (40%), Gaps = 37/415 (8%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           +D      + + +   +V IL +P  ++ + + +       V    ++ L G+  G  ++
Sbjct: 38  TDSLSAGTRVLEMFRGEVRILHIPGTIKRIAIGNGKLLTANVV-DGSLMLLGEQDGITSL 96

Query: 100 ILIGHDG----KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           ++    G      +      +   +  L   L+       +R++ +  ++VL G++    
Sbjct: 97  VVWNDKGIALQTTVRIAKAEVNASLEQLRAVLKSVAG---LRIDAIGSSIVLSGVI---- 149

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----QVTLKVTIAEVRRDILK 211
                          +G  + A    K V++   +   D     V  KV I EV R   +
Sbjct: 150 -----------HRDMAGIVKAATQDMKNVVDTTTVDEGDALRKTVHFKVQIMEVTRTGQR 198

Query: 212 QIGFQH--SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            +G     +  G   G + S A     K V+ G  + + G+    +  + ++        
Sbjct: 199 NLGIAWDSAFKGPQIGGAASVATG-AAKAVTAGTSYFLAGIAS--NITSQINFAVENGDA 255

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             LA P L   SG +ASF +GGQ      S + G TS+   DYG+ L   P V +   I 
Sbjct: 256 YVLAAPELNTKSGGTASFLAGGQVPIPQ-SGALGTTSIEYKDYGIKLSIVPVVDANNIIS 314

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
             + TE+S+    V    MP +  R   + + + +G T+ ++GL+  D      G+P LS
Sbjct: 315 AHLTTEISQIDPSVTYAGMPGFLTRNTSSDISMRAGETLAISGLVSADAANGSNGMPFLS 374

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           ++PI+G LFR+  F  +++++ I  TP +  P    +LS   D  +  D     F
Sbjct: 375 QVPIIGQLFRSDSFRAKKSDLVIFVTPVISDP----ELSPNTDLLARADKLDENF 425


>gi|327541686|gb|EGF28210.1| bacterial type II/III secretion system protein [Rhodopirellula
           baltica WH47]
          Length = 454

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 95/338 (28%), Positives = 156/338 (46%), Gaps = 29/338 (8%)

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           +   +  +++RV  + ++ ++ G V ++ D  +AV ++E F +              V+N
Sbjct: 1   MNSQLPLASLRVTPIGESAIISGYVTSVDDVDKAVAITEQFYT-------------TVIN 47

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGD 244
            + + G  QV L   I EV R  L+++G   +I   +       S   D G   V     
Sbjct: 48  NIQVVGIQQVLLHTKIMEVSRTKLRELGVDLAILDDNFTLLNGPSGVLDVGAGIVEGDAG 107

Query: 245 FSVKGVLD-------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F    + D         +FET+++AL      + LAEPT+ A  G+ A FT GG+     
Sbjct: 108 FGPIPLGDTNLRFNVNGNFETLINALHEQRLTKLLAEPTVVATHGRPARFTVGGRIP-TI 166

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRV 353
           V    G   +T  DYG  + F P V+ PGRI L ++ EVSEP     + VN  ++ ++  
Sbjct: 167 VPGQNGQVQITYEDYGTSIDFLPFVVGPGRIRLEVRPEVSEPDPSRAVTVNGTNVTAFTT 226

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R  +T VE+ +G T  LAGLL+   +      P    +P +G LFR  +  R E E+ I 
Sbjct: 227 RYVETAVEMQAGQTFALAGLLQSRTESTTSRTPFFGSLPYVGTLFRKMQERRNEIELLIL 286

Query: 414 ATPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN 449
            TP LV+ +   ++ R  P  +    DD + + +  + 
Sbjct: 287 VTPELVEAMDPHEVPRGGPGMNSHSPDDKEFYLYGHIE 324


>gi|264680618|ref|YP_003280528.1| type II and III secretion system protein [Comamonas testosteroni
           CNB-2]
 gi|262211134|gb|ACY35232.1| type II and III secretion system protein [Comamonas testosteroni
           CNB-2]
          Length = 454

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 110/430 (25%), Positives = 173/430 (40%), Gaps = 35/430 (8%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
            RTF       L   + SV   P + +           +    ++I + +     L +P 
Sbjct: 10  SRTFSLKPLYLLCGLSLSVVTAPVLAQQVPNTGESRAQQATAAREIKLVMGAQHELNLPG 69

Query: 65  DVQDVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
            V+ + + D T A V +          + L     G  + ++      Q     + +++ 
Sbjct: 70  GVERIAIGDDTIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQ- 128

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYA 177
                + LR   A S I  +         G +   Q + +A  V+LS   L  +      
Sbjct: 129 ----RVELRTAKASSLIEQQFA-------GELANAQSADKAKTVDLSSVQLKSNVVQVDV 177

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                    +  +              +        GF   I G  S      ++  G  
Sbjct: 178 KVVEFNKTQMKKVG-----------LNLFSTAPNSSGFSFGIFGRGSYGISGGSSTTGAA 226

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                  F++    D+      +  LE     R LA PTL A+SGQSA+F SGG+     
Sbjct: 227 ANPLTQAFNLLMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP- 285

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRV 353
           V + TG  ++    YG+ L  +PTVLS  RI L++  E SE      I +N+  +PS   
Sbjct: 286 VPAGTGMVAIQYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATVPSITT 345

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+ADTTVEL  G + V+ GL+  +     + +PLL  IPILG LF+   F ++E+E+ I 
Sbjct: 346 RRADTTVELGDGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIV 405

Query: 414 ATPFLVKPVA 423
            TP LVKP+A
Sbjct: 406 VTPRLVKPLA 415


>gi|297568753|ref|YP_003690097.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924668|gb|ADH85478.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 406

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 107/426 (25%), Positives = 174/426 (40%), Gaps = 66/426 (15%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L  +      LPP   A A      D        + +      ++     +  V V+DP
Sbjct: 12  LLLLTMCLAVLLPPGAVAAAPDSWRPD-------SLRLEAQSQHVISRDQPIIRVAVADP 64

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
           +  +V + S + + L     G   + L  H   +   L +++                D 
Sbjct: 65  SIMEVEMISQQELLLTALAPGATQLRLW-HQETEPEMLRVVVVP---------AAPYQDY 114

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           +I+V                    R VE+S   L QSG            +NLL  +   
Sbjct: 115 DIQVR----------------ADIRVVEVSRRALRQSG------------VNLLKDSDSI 146

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            V                 G    I   ++G     A+D G  FV     F++     + 
Sbjct: 147 TVATTA------------PGVLTGIDNQAAG--LPLASDSG--FVPLAQAFNLVAGDAKQ 190

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
               ++  LE      TLAEP+LT +SG++ASF +GG+        ++G+ S+   D+GV
Sbjct: 191 RLLGIISLLESNGFAYTLAEPSLTVMSGKTASFLAGGEVPIPVSHGTSGSVSIEYRDFGV 250

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            L  TPTVL P RI + +  EVSE      +      +P +RVR+ +TTV+L  G + V+
Sbjct: 251 RLQLTPTVLDPRRITIEVSPEVSELDFSAAVSTAGVTVPGFRVRRTETTVQLADGESFVI 310

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSR 429
           +GL+ ++     E +P L  +PILGA F+++R    + E+ +  TP LV+P+     +  
Sbjct: 311 SGLISNENASTVEKVPFLGSLPILGAFFKSTRLQSNDKELIMVVTPHLVRPLERGAQVPL 370

Query: 430 PDDHYS 435
           P +HY 
Sbjct: 371 PGEHYR 376


>gi|319791194|ref|YP_004152834.1| type II and iii secretion system protein [Variovorax paradoxus EPS]
 gi|315593657|gb|ADU34723.1| type II and III secretion system protein [Variovorax paradoxus EPS]
          Length = 532

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 92/441 (20%), Positives = 172/441 (39%), Gaps = 36/441 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ + ++ ++++P  V  V + +    +  V     M +  ++ G + + +   +G  +
Sbjct: 96  LTLYVGQMALVKMPG-VSRVAIGNGKVMEARVLDGANMLITAQDAGDSTLHVWDKNG-TV 153

Query: 110 LNLDILIE-RDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
             L + +   D+  +   LR      S + +  + + +++ G        +R   +++ +
Sbjct: 154 RKLKVRVNVADLERIADELREITRGISGVNIRRIGERIIMDGNSLDPAAVERLNTVAQLY 213

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSG 225
                    A+           I  +  V ++V I E  +  L  +G +   S  G + G
Sbjct: 214 APAVVSLATAD----------RIRVDRMVDIQVRIVEFSKTALDDLGVRWQSSGDGFNFG 263

Query: 226 PSKSFAADFGGKFVSEGGDFSVKG-----------------VLDRFSFETVLHALERATA 268
                A+    + + +G  F+                         S  + ++ L +   
Sbjct: 264 LFSDIASSGSYRILPDGSAFNTSTPQGTALLGQNRRMPEAYFGIGLSLTSRINLLVQRGN 323

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
              LA P L+  SG  A F +GG+     +S+  GA SV    YGV L+  P     G +
Sbjct: 324 AFLLASPNLSTRSGGEAKFLAGGEIPLPALSTQ-GAGSVEFKPYGVRLNIKPIADGEGNV 382

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
              I TEVS     V    +P   +R+ DT   + +G TIVL+GLL  +  +  +G+P L
Sbjct: 383 SGSILTEVSSIDRSVAVQGIPGLLIRRTDTEFNVKAGETIVLSGLLSRESTRSSDGVPGL 442

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            K PI+G  FR      +E E+ +  TP +V P   R   R +    +E D  + F    
Sbjct: 443 RKTPIIGRAFRADNDTDKEQEVVVFITPRVVGPADSR--PRIERARELERDVGSNFGTLT 500

Query: 449 NKIYGPKEASEVEGQNYKGAI 469
                P  +         G I
Sbjct: 501 EDKSDPNGSRPPAAAADIGGI 521


>gi|85859832|ref|YP_462034.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
 gi|85722923|gb|ABC77866.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
          Length = 717

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 68/269 (25%), Positives = 114/269 (42%), Gaps = 17/269 (6%)

Query: 182 KKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++NLL        QV ++ TI E+      + G +  I  S  G S +      GK  
Sbjct: 448 RNLLNLLQALDVPARQVLIEATIVELTLTDELKYGVEWFIRNSWDGDSYTLGT--LGKLG 505

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----- 294
            E    +   +     FE ++ AL   +    L+ P L  +    A+   G         
Sbjct: 506 LEPLGLTYAFLSRTGQFEALISALAEKSKANILSTPRLMVLDNMEATIQVGKDVPTVTGQ 565

Query: 295 ------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
                   T  S++ + S+     GV+L   PT+ + G + L I  EVS+       GD 
Sbjct: 566 ISTLDSVNTTDSTSVSQSIQYRSTGVMLKVKPTINTEGLMTLEITQEVSDIAETPGVGDS 625

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P    R+ +T++    G TIVL GL++++    +  +PLL  IPILG LF+ +   +++T
Sbjct: 626 PIILTRRINTSIIAAHGQTIVLGGLMQENQSLGESKVPLLGDIPILGNLFKATSKTKDKT 685

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
           E+ +  TP ++      D  +  D    E
Sbjct: 686 ELLVLVTPTIL--TDPNDAVKITDQLRKE 712


>gi|113867004|ref|YP_725493.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16]
 gi|113525780|emb|CAJ92125.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16]
          Length = 478

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 97/425 (22%), Positives = 174/425 (40%), Gaps = 41/425 (9%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
           P    A       S     +   I +   +V  L+VP  ++ V + +       V   R 
Sbjct: 22  PVTTAARTGAQPPSYELPARFGAIELFKGEVRALEVPGTIRRVAIGNGALVSSTVVDGR- 80

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTV 145
           + L  + +G  ++I+    G  +     +   D A +   LR  +     +++E+V  +V
Sbjct: 81  LLLLAEEIGTTSLIVWNERGVALQGKLRVAPADTADVAQRLRASLGSVRGLKIEVVGPSV 140

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----AGEDQVTLKVT 201
           VL G+V       + V L +T          A S    V+NL+      A +  V  KV 
Sbjct: 141 VLSGIVD-----PQMVPLIKT----------ATSGLDSVVNLVRADEGDALKKTVHFKVH 185

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----------------FGGKFVSEGGD 244
           I E+ R  ++++G       S +GP  +FA +                 F        G 
Sbjct: 186 IMEITRRGMEKLGIAW--QQSFNGPQIAFAGNPVHTGRYRTLPSTDAATFTDTPSQVAGA 243

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            S   +    +  + ++          LA P L + SG  A+F +GG+      + + G 
Sbjct: 244 ASGFYLGIATTIFSRINLAISDGDAYVLAAPELNSKSGGLATFLAGGEVPIP-KAGAFGT 302

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           T V    YG+ L+  P V     I   ++TE+S+    V+ G  P++  R+  +   + +
Sbjct: 303 TDVDYKPYGIKLNIRPAVNVDNVISTTLETEISQIDPSVSFGGFPAFLTRRTTSETSIRA 362

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T+ ++GL+  D  +  + +PLL  IPILG LFR+  F   ++++ I  TP +  P + 
Sbjct: 363 GETLAISGLVNADASKAVDKVPLLGSIPILGRLFRSDEFRNNKSDLVIFVTPVVYDPASP 422

Query: 425 RDLSR 429
            + + 
Sbjct: 423 ENAAL 427


>gi|221070074|ref|ZP_03546179.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
 gi|220715097|gb|EED70465.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
          Length = 454

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 106/420 (25%), Positives = 170/420 (40%), Gaps = 35/420 (8%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L   + S   +P + +           +    ++I + +     L +P  V+ + + D 
Sbjct: 20  LLCGLSLSAVTVPALAQQLPNAGESRAQQATAAREIKLVMGAQHELNLPGGVERIAIGDD 79

Query: 75  TKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
             A V +          + L     G  + ++      Q     + +++      + LR 
Sbjct: 80  AIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQ-----RVELRT 134

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNL 187
             A S I  +         G +   Q + +A  V+LS   L  +               +
Sbjct: 135 AKASSLIEQQFA-------GELANAQSADKAKTVDLSSVQLKSNVVQVDVKVVEFNKTQM 187

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
             +              +        GF   I G  S  S   ++  G         F++
Sbjct: 188 KKVG-----------LNLFSTSPNGSGFSFGIFGRGSYGSSGGSSTTGATANPLTQAFNL 236

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
               D+      +  LE     R LA PTL A+SGQSA+F SGG+     V + TG  ++
Sbjct: 237 LMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP-VPAGTGLVAI 295

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELP 363
               YG+ L  +PTVLS  RI L++  E SE      I +N+  +PS   R+ADTTVEL 
Sbjct: 296 QYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATIPSITTRRADTTVELG 355

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G + V+ GL+  +     + +PLL  IPILG LF+   F ++E+E+ I  TP LVKP+A
Sbjct: 356 DGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIVVTPRLVKPLA 415


>gi|229588195|ref|YP_002870314.1| putative type II secretion system protein [Pseudomonas fluorescens
           SBW25]
 gi|229360061|emb|CAY46915.1| putative type II secretion system protein [Pseudomonas fluorescens
           SBW25]
          Length = 405

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 105/445 (23%), Positives = 175/445 (39%), Gaps = 65/445 (14%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           +F+  +   +    P+  A AA  N S +       + +G      LQ PV +  + + D
Sbjct: 8   LFMHMAWALMLSSLPVGMALAAPGNCSALGQLPA-VVEVGEGLQQELQSPVAITRLAIGD 66

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           P  A                                   D+ +  D   L   +      
Sbjct: 67  PKIA-----------------------------------DVRVNGDRHFLLTGV------ 85

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
                   +  +V      T    ++++   +   + +  +   + S   ++        
Sbjct: 86  ----ASGATSLMVWTACASTP---RQSMVFVKGRATSALTSLSLSPSEDPLL-------P 131

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLD 252
            QV   +   EV R  LK+   +   TG +    S +  +   G F       S      
Sbjct: 132 SQVQTDIRFVEVSRTKLKEASTRLLGTGKNFFLGSPNLLSPSEGVFKLPVSTDSFNVGFG 191

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
                 +++ALER+    TLA P+L A+SGQSASF +GG+      S+ +   S+   ++
Sbjct: 192 GGRVSAMINALERSGFAYTLARPSLVAMSGQSASFLAGGEVPVPVPSAGSDTISIEYKEF 251

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTI 368
           G+ L  TPTV+   RI L++  EVSE        +    +P+  VR+ DT+V L  G + 
Sbjct: 252 GIRLTLTPTVIDRNRITLKVAPEVSELDYSNAVIIQGIQVPALTVRRTDTSVSLADGESF 311

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD-- 426
           V++GL+  + +      P L  IPILGA FR+S  +REE E+ +  TP LV+P+A     
Sbjct: 312 VISGLISTNNRSTISKFPGLGDIPILGAFFRDSNISREEKELLMIVTPHLVQPLAANAQL 371

Query: 427 LSRPDDHYSV--EDDAKAFFFNRVN 449
            S P +       +  + FF    N
Sbjct: 372 PSLPGEKLRSYDPNWFRLFFLENGN 396


>gi|258624763|ref|ZP_05719694.1| Flp pilus assembly protein [Vibrio mimicus VM603]
 gi|258582925|gb|EEW07743.1| Flp pilus assembly protein [Vibrio mimicus VM603]
          Length = 347

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 98/366 (26%), Positives = 157/366 (42%), Gaps = 42/366 (11%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS------------- 169
           L+ TL     D +I V  V D VVL G V + +   +   L    L              
Sbjct: 2   LKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLKKNVSKVNNHVIET 61

Query: 170 -----QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                +      A      V+N L +   +Q+ +K+TIAEV    L ++G  +   G   
Sbjct: 62  GENNREEALQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLSELGVSYGDIG--- 118

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                      GKF ++  DF+ + ++       ++ A       + LAEP L+ ISG++
Sbjct: 119 -------GGDVGKFYNKLLDFTAQDIV------AIIAASGNDDIGQVLAEPNLSVISGET 165

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341
           ASF  GG+         T   ++   +YG+ L     V     I L +  EVS       
Sbjct: 166 ASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLSLLPEVSSLDSVNR 223

Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
              ++ + PS + RKA TTV+L  G + VLAGLL  + ++    IP+L  IPILGALF +
Sbjct: 224 SDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPILGDIPILGALFSS 283

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
           ++ +R++TE+ I AT  LV PV    +  P   +    D +      ++ +  P+    +
Sbjct: 284 TKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLLRIDLSGVDEPELQRTI 341

Query: 461 EGQNYK 466
               + 
Sbjct: 342 NAGGFN 347


>gi|163801327|ref|ZP_02195226.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
 gi|159174816|gb|EDP59616.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
          Length = 416

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 144/377 (38%), Gaps = 42/377 (11%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I++ +N+   L +    +D++V      DV +     +YL     G+  VI+ G +    
Sbjct: 37  INMSVNETKHLPLSYVPKDIVVGSDKVVDVNLADSNNLYLIAHEAGKTKVIVKGEEETTE 96

Query: 110 LNLDILIE-RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
             + +    +D  +L   L      +++    V++ + ++G V+   + +   +L     
Sbjct: 97  YVIQVRDTDKDTHNLNKFLESA-GYTDVEAVKVAEKIYINGAVKDKVEKRELNKLVR--- 152

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
                    N+ S+  ++   I    QV + +T+AEV + I  ++G       S      
Sbjct: 153 ---------NAISRYYVDNTTITENRQVRINLTMAEVSKSIDDELGITWGAGWSKIDGVT 203

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           S                         S    +  L R      L  P++   +G +A+F 
Sbjct: 204 S------------------------KSLSATIGLLSRNNLATVLTRPSIIVTNGSTATFE 239

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAG 346
           +GG+    T         V   DYG+ L F P +     I LR     S+    I +   
Sbjct: 240 AGGEVPVLT--YDDENVDVEFKDYGIKLEFKPNIKRDQSIDLRANVSSSQIADFIKLGGN 297

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D P    R  +T + +  G   VLAGL+ +   Q    +P L  +PI+G+LF +  F   
Sbjct: 298 DTPQLNTRSVNTELNVNDGDIFVLAGLIDNSQTQAVSKVPFLGYLPIIGSLFTSENFKSN 357

Query: 407 ETEIFIAATPFLVKPVA 423
           +TE+ I A    V+   
Sbjct: 358 KTELMIFAEVNFVENSI 374


>gi|186473164|ref|YP_001860506.1| type II and III secretion system protein [Burkholderia phymatum
           STM815]
 gi|184195496|gb|ACC73460.1| type II and III secretion system protein [Burkholderia phymatum
           STM815]
          Length = 451

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 162/392 (41%), Gaps = 19/392 (4%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
           +          + +   +V +L VP  ++ + + +       V   R + L  ++ G  +
Sbjct: 39  VDADAAQNAAVLDLYKGEVRMLNVPGTIKRIAIGNGKLLTANVVDGR-VMLLAESAGITS 97

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDS 157
           +++    G  +     + + D+      LR  +A    +RV+ V   +VL G V   + +
Sbjct: 98  LVVWNERGVALQTTVRVAKGDVGMSAAQLRSVLAAVPGVRVQEVGPNIVLAGSVHREKAA 157

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
                +++              + KK +             KV I EV R   K IG   
Sbjct: 158 AVKAAIADMTNVIDTTTIDEGDALKKTL-----------HFKVQIMEVTRTGQKDIGIAW 206

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                 +GP  S    F G   + G +F + G+    +  + ++          LA P L
Sbjct: 207 --DSQFAGPQVS-GQGFIGSGAASGANFFLAGIAS--TITSRINFAINNGDAFILAAPEL 261

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              SG +ASF +GG+      + + G T V    YG+ L+  P V +   I   +QTE+S
Sbjct: 262 NTKSGGTASFLAGGEVPIP-KAGALGTTDVEYKPYGIRLNIRPVVDANDIISATVQTEIS 320

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           +    V+ G  P +  R A + + L +G TI ++GL+  D      G+P  +++PI+G L
Sbjct: 321 QIDPSVSYGGFPGFLTRSASSDISLRAGETIAISGLVSADALNGSAGMPFFARLPIIGQL 380

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           FR+  F  + +++ I  TP + +P    + + 
Sbjct: 381 FRSDSFRAKNSDLVIFVTPLISEPSGEPNTAL 412


>gi|330722019|gb|EGG99947.1| General secretion pathway protein D [gamma proteobacterium
           IMCC2047]
          Length = 338

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 115/290 (39%), Gaps = 12/290 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKF 238
           K V+  L+I    QV ++  I EV   +L  +G Q   +  S+G   +F A   +     
Sbjct: 14  KGVVQKLDIR-RKQVLVEAVIVEVNDSVLDDLGVQWQTSTPSNGEFSAFNAIPANISTPA 72

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           +   G     G     S   ++ ALE  T    L+ PT+  +  + A    G    + T 
Sbjct: 73  LPTLGSGLTLGYFKDNSLRALIRALESDTKANVLSTPTIVTLDNEEAEILVGSNVPFITG 132

Query: 299 SSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           S +  ++       ++   D G+ L   P +     + L I+  V               
Sbjct: 133 SETNESSPTSNPFQTIQRQDIGITLKVKPRINENDSMTLAIEQTVESIATSAVNTADIVT 192

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   T V L     +VL GL+ D+   ++  +P+L  IP+LG LFR++    E+  + 
Sbjct: 193 NKRNIKTNVLLEDDQVLVLGGLISDESSNVESKVPVLGHIPVLGRLFRSTSTKVEKKNLM 252

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           +   P ++  +  R      D Y+   + +  +    ++I+ PK+   + 
Sbjct: 253 VFIHPMILSDLE-RSNKLTSDRYNSMRNKQQQYNGDRDRIFIPKQPPLLP 301


>gi|110632479|ref|YP_672687.1| Flp pilus assembly protein secretin CpaC-like [Mesorhizobium sp.
           BNC1]
 gi|110283463|gb|ABG61522.1| Flp pilus assembly protein secretin CpaC-like protein
           [Chelativorans sp. BNC1]
          Length = 473

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 97/431 (22%), Positives = 179/431 (41%), Gaps = 49/431 (11%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           +      G+++ I + K + L    + + + V+DPT AD+        +++GK+ G+  V
Sbjct: 75  AQASPAYGQRLIIEIGKGLQLSGTENAESLFVADPTIADIKESPGEAHFIYGKSAGETTV 134

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
             +   G+ +   D+++  ++  ++  L +    + I +     +V   G V   Q    
Sbjct: 135 TGVDLGGRTLFQYDMVVIYNLDEMQRMLSQRFPAARITIRSARGSVYATGTVPDQQTYDA 194

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A+E  E  + +S            ++N + +A    + L +   EV RD L+  G   S 
Sbjct: 195 AIESLEKSIPESV-----------LINEIAVAESPIIRLDIKFMEVSRDRLETYGVNWSA 243

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLT 278
                              +S    +    +  R       +  L        L++ TLT
Sbjct: 244 -------------------LSPSNHYRTGDIRGRGHDVNKFMKLLLDNGVATILSDTTLT 284

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            I  + ASF +G +    T S + GA S  V     G  + FTP +L  G++ L I+ E+
Sbjct: 285 TIGRKKASFMAGEEIAIPTHSVNNGAASFGVDYKFVGFNIGFTPQLLPGGKVSLAIEAEI 344

Query: 337 SEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG----IPLLSK 390
           SEP   +  ++G +P    RK +T V+L SG + +LAGL + D     +       ++ +
Sbjct: 345 SEPRQTVQFSSGPVPYVAARKLNTNVDLHSGESFILAGLSRMDTTGAHDQPRRNWGVVGE 404

Query: 391 IPILGALFRNSRFNREETEIFIAATPFL---VKPVA--MRDLSRPDDHYSVEDDAKAFFF 445
             +L +L  +   +    +I +  TP+     KP A  +  L R +  + + + +K F  
Sbjct: 405 --VLRSLAGHGSVSAHNRDIAVVVTPYFGASDKPSAADITGLQRSNIEFILSNKSKPFSS 462

Query: 446 NRVNKIYGPKE 456
            R   IYGP  
Sbjct: 463 AR---IYGPAG 470


>gi|299532819|ref|ZP_07046206.1| type II and III secretion system protein [Comamonas testosteroni
           S44]
 gi|298719043|gb|EFI60013.1| type II and III secretion system protein [Comamonas testosteroni
           S44]
          Length = 454

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 109/428 (25%), Positives = 174/428 (40%), Gaps = 31/428 (7%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
            RTF       L S + SV  +P + +           +    ++I + +     L +P 
Sbjct: 10  SRTFSLKSLYLLCSLSLSVVTVPALAQQVPNAGESRAQQATAAREIKLVMGAQHELNLPG 69

Query: 65  DVQDVLVSDPTKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
            V+ + + D T A V +          + L     G  + ++      Q     + +++ 
Sbjct: 70  GVERIAIGDDTIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQ- 128

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                + LR   A S I  +   +          + D  + V+LS   L  +        
Sbjct: 129 ----RVELRTAKASSLIEQQFAGELA-----NAQLADKAKTVDLSSVQLKSNVVQVDVKV 179

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
                  +  +              +        GF   I G  S  +   ++  G    
Sbjct: 180 VEFNKTQMKKVG-----------LNLFSTAPNSSGFSFGIFGRGSYGTGGGSSTTGAAAN 228

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                F++    D+      +  LE     R LA PTL A+SGQSA+F SGG+     V 
Sbjct: 229 PLTQAFNLLMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP-VP 287

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRK 355
           + TG  ++    YG+ L  +PTVLS  RI L++  E SE      I +N+  +PS   R+
Sbjct: 288 AGTGMVAIQYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATVPSITTRR 347

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ADTTVEL  G + V+ GL+  +     + +PLL  IPILG LF+   F ++E+E+ I  T
Sbjct: 348 ADTTVELGDGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIVVT 407

Query: 416 PFLVKPVA 423
           P LVKP+A
Sbjct: 408 PRLVKPLA 415


>gi|238754119|ref|ZP_04615477.1| Protein transporter HofQ [Yersinia ruckeri ATCC 29473]
 gi|238707615|gb|EEP99974.1| Protein transporter HofQ [Yersinia ruckeri ATCC 29473]
          Length = 422

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 5/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L   I  +  + L ++G +  I    SG S     +F      +    +    + R
Sbjct: 190 QQVQLAAHIVTISSESLHELGVRWGIPARDSGGSALRINNFNVGLPIQNSAITAGFNIAR 249

Query: 254 FS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            S    +  L ALE+   +  +A P LT    Q+AS   G    Y   S   G T+V   
Sbjct: 250 ISGQLLDLELSALEQENQVEIIASPRLTTSHQQTASIKQGTDIPYSVSSGKNGGTTVEFK 309

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L+++   + P + +  G+  S     ++  T + +  G TI
Sbjct: 310 EAVLGMEVTPRILGAGKITLKLKISQNMPGMAIKRGENESLAIDKQEIKTQITVNDGETI 369

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +    +    +P+LS IP+LG LF+ +   +   E+ I  TP L+
Sbjct: 370 VLGGIFQQKNSRGANKVPVLSDIPLLGHLFKQTVNAKSRRELVIFITPRLI 420


>gi|119943949|ref|YP_941629.1| type IV pilus secretin PilQ [Psychromonas ingrahamii 37]
 gi|119862553|gb|ABM02030.1| type IV pilus secretin PilQ [Psychromonas ingrahamii 37]
          Length = 689

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 4/242 (1%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + KK++ +L+I    QV ++  +  V   + +++G +  +T +SS    S   +      
Sbjct: 444 AVKKMIQILDIP-VRQVVIEARMVTVDDSVSEELGVKWGMTSTSSSTVDSLNVNLPATDA 502

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +    F +    +    +  L ALE       +A P +T  + Q+A    G +  Y   S
Sbjct: 503 AGTIAFKLAKFSNGDILDLELSALESENKAEIIASPRITTANQQTAYIEQGTEIPYVE-S 561

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKAD 357
           +S+GATSV      + L  TP +    ++ L ++         V+AG     +   +K  
Sbjct: 562 ASSGATSVAFKKAVLSLTVTPQITPDNKVILDLEITQDTVGETVSAGTGEAVAIDTQKIG 621

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V + +G T+VL G+ +         +PLL  IP LGALFR++     ++E+ I  TP 
Sbjct: 622 TQVLVGNGETLVLGGIYQQRNSIAVSKVPLLGDIPYLGALFRSTNEENTKSELLIFVTPR 681

Query: 418 LV 419
           +V
Sbjct: 682 IV 683


>gi|260768627|ref|ZP_05877561.1| type II and III secretion system protein [Vibrio furnissii CIP
           102972]
 gi|260616657|gb|EEX41842.1| type II and III secretion system protein [Vibrio furnissii CIP
           102972]
          Length = 387

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/392 (23%), Positives = 157/392 (40%), Gaps = 63/392 (16%)

Query: 44  IGKGKKISIGLNKVIILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           +   + I++  N    L V    +  V V+DP  A + V +  T+ +   N G  ++++ 
Sbjct: 20  VHAAEPITLSENAQTSLSVGEQQITRVAVADPNVATIDVLNKNTLLINSHNGGSTSLLVW 79

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             +        + +   +              N++V+           ++ ++ S+ A++
Sbjct: 80  LKNSPSPKAYQLHVVPSLVSTT----------NVQVQT---------DIKVVEVSKSALK 120

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
            +  F  +   N      +   +N  N AGE                             
Sbjct: 121 EAGFFFGKQSGNTTFGIGNNAALNGGNFAGE----------------------------- 151

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                       G  F+     F+V          + + AL       TLAEP+L  +SG
Sbjct: 152 ---------LLSGNSFLPLSNAFNVVIGDMSRGILSTISALNANGFAYTLAEPSLVTMSG 202

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----E 338
            +A+F +GG+  Y   SS  G  ++   ++GV L+ +PTV+   RI L++  EVS     
Sbjct: 203 HTATFLAGGEFPYPKASSD-GDITIEFKEFGVRLNLSPTVMKDNRIMLKVAPEVSELNYN 261

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             +      +P   VR+ DTTV+L  G T V++GL+        +  P L  IPILGA F
Sbjct: 262 NAVSTGGVLVPGMSVRRTDTTVQLGDGETFVISGLISSSTMNNSDRFPGLGDIPILGAFF 321

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            ++RF + + E+ +  TP LVKP+A      P
Sbjct: 322 SSTRFEKNDKELMMVVTPHLVKPIAKGATLPP 353


>gi|317049888|ref|YP_004117536.1| type IV pilus secretin PilQ [Pantoea sp. At-9b]
 gi|316951505|gb|ADU70980.1| type IV pilus secretin PilQ [Pantoea sp. At-9b]
          Length = 418

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/310 (22%), Positives = 131/310 (42%), Gaps = 30/310 (9%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
              L+          ++ V+  +++++L        D+ RA++ +  +L           
Sbjct: 131 ARSLQAERSLMTPRGSVTVDSRTNSLLLR-------DTPRALQETVRWL----------- 172

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
                 N L++  E QV L   I  +  + L+++G    ++ +                 
Sbjct: 173 ------NALDLPLE-QVELSAHIVTISEEHLRELGVNWGLSPAEEVMQTLRNPQLAIPLA 225

Query: 240 SEGGDF---SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                F      G +        L ALE+ + I  +A P L     Q+A+   G +  Y+
Sbjct: 226 VSNPAFRMGVTLGHIGGDLLNLELSALEQESQIDIIASPRLFTSHQQTATIKQGTEIPYE 285

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVR 354
             S ++GAT++   +  + +  TP VL  GRI L+++   + P   +N G+    S   +
Sbjct: 286 VKSGNSGATAIEFKEAVLGMEVTPVVLGNGRIQLKLRLSQNMPGRSINTGEHQTLSIDKQ 345

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + DT V L  G T+ L G+ +    Q +  +P L K+P++G LFR+     ++ E+ I  
Sbjct: 346 EIDTQVTLRDGETLALGGIFQQQRAQNENRVPWLGKLPVVGNLFRHQTDEHKKKELVIFI 405

Query: 415 TPFLVKPVAM 424
           TP LV+  A+
Sbjct: 406 TPRLVREAAL 415


>gi|308188407|ref|YP_003932538.1| Type IV pilus biogenesis and competence protein pilQ precursor
           [Pantoea vagans C9-1]
 gi|308058917|gb|ADO11089.1| Type IV pilus biogenesis and competence protein pilQ precursor
           [Pantoea vagans C9-1]
          Length = 423

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 107/237 (45%), Gaps = 6/237 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---AADFGGKFVSEGGDFSVK-G 249
           +Q+ L   I  +  + L+++G +  +    +  +        D      S G    +   
Sbjct: 184 EQIELSAHIVTISEEHLQELGVKWGLQAGDAAVTDILHHPRLDIPLALSSPGISVGMALA 243

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            +     +  L ALE+   I  +A P L     Q+AS   G +  Y+  + ++GATS+  
Sbjct: 244 RIGGQLLDLELSALEQENQIEIIASPRLFTSHQQTASIKQGTEIPYEVSAGNSGATSIEF 303

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGT 367
            +  + +  TPT+   GRI L+I    + P   +  GD  + S   ++ +T V +  G T
Sbjct: 304 KEAVLGMEVTPTISGNGRIQLKIHISQNMPGRSIRTGDSDILSIDKQEIETQVTVSDGQT 363

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           + L G+ +      +  +PLL  +P++G LFR     R++ E+ I  TP LV+  A+
Sbjct: 364 LALGGIFQQQRSHGENKVPLLGNVPLIGGLFRQQSEQRKKRELVIFITPRLVREAAL 420


>gi|292670351|ref|ZP_06603777.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648082|gb|EFF66054.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 426

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 85/346 (24%), Positives = 142/346 (41%), Gaps = 26/346 (7%)

Query: 99  VILIGHD----GKQMLNLDILIERDIAHLEMTLRRFIADSNIR--VEMVSDTVVLHGMVR 152
            +  G D     +++    +    D   L       +     R  V   +D     G   
Sbjct: 85  FLAFGADARGENRRVHTYAVRF-ADPEELAHAANLSLTGEGKRAIVSKNNDERENEGSDS 143

Query: 153 TIQDSQRA-VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
                QR  V+ +   L   G    A  + +++++ L+     QV+L+  +  + ++  K
Sbjct: 144 DSDAQQRVLVDTATNTLLFYGTESEAL-AVREIISALD-REPQQVSLEARVVAISKEAAK 201

Query: 212 QIGFQHSITG---------SSSGPSKSFAADFGGKFVSEGGDFSVK----GVLDRFSFET 258
           Q+G   S +             G  +    + G    S  G         G+   F +  
Sbjct: 202 QLGVDWSWSSLPQYPRVQYDRGGSWRVGERNAGTGGTSAPGIIRFGRGPEGLPYEFYYSA 261

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVL 316
            + AL      + LA P +T I G+ A    G +     V++S   T+  +   + G++L
Sbjct: 262 AIRALITEGKAKMLARPNVTTIQGREALINIGAEVPVPRVATSNNVTTTGIEYREAGIIL 321

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            +TP V + G I  R+ TEVS PV  V       ++ R ADTTV L +G T+V+ GL+  
Sbjct: 322 RYTPRVTADGNIVARVHTEVSTPVY-VEDLKAYRFQKRSADTTVRLKNGETMVIGGLIDS 380

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           D  +    IP L  +P+LGA FR+ R +R ETE+ I  T  ++   
Sbjct: 381 DESRSLSKIPFLGDLPVLGAFFRSVRTSRTETELMIFLTAHVLDET 426


>gi|293393378|ref|ZP_06637690.1| type IV pilus secretin PilQ [Serratia odorifera DSM 4582]
 gi|291424115|gb|EFE97332.1| type IV pilus secretin PilQ [Serratia odorifera DSM 4582]
          Length = 411

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 5/232 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +QV L   I  + R+ L+++G +  +T       +    +F      E    +V   L R
Sbjct: 179 EQVQLAAHIVTISREDLRELGVRWGLTADQRAAKRLRIDNFSVGLPLERSAINVGFHLAR 238

Query: 254 FS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            S    +  L ALE+  A+  +A P L   + Q+AS   G +  Y+  S ++GAT++   
Sbjct: 239 VSGRLLDLELMALEQENAVEIIASPRLLTANQQTASIKQGTEIPYEVSSGASGATAIQFR 298

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G I L +    + P   V   +G+  +   ++  T V + +G T+
Sbjct: 299 EAVLGMEVTPRILPNGLITLTLHISQNMPGRAVRQGSGEALAIDKQEIKTQVTVKNGETV 358

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           VL G+ +       + +P L  +P+LG+LF+ S    ++ E+ I  TP L+K
Sbjct: 359 VLGGIFQRQRSHGADKVPGLGDVPLLGSLFKQSSKQHKKRELVIFITPTLIK 410


>gi|311277674|ref|YP_003939905.1| type IV pilus secretin PilQ [Enterobacter cloacae SCF1]
 gi|308746869|gb|ADO46621.1| type IV pilus secretin PilQ [Enterobacter cloacae SCF1]
          Length = 412

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G + ++  + S    G   + ++D      +    F++ G 
Sbjct: 180 QVELAAHIVTMNEKSLRELGVKWTLADADSPPGRGKFTTLSSDLSVTDATSRAGFNI-GR 238

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++    E  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 239 INGRLLEFELSALEQQQQLEIIASPRLLASHLQPASIKQGSEIPYQVSSGDSGATSVEFK 298

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL   R+ L+++   + P  V+    G++ +   ++ +T VE+ SG T+
Sbjct: 299 EAVLGMEVTPTVLDDRRVRLKLRISENMPGQVLQQADGEVLAIDKQEIETQVEVKSGETL 358

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  ++GIPLL  IP LG LFR+   + E  E+ +  TP ++
Sbjct: 359 ALGGIFSQKNKSARDGIPLLGDIPWLGQLFRHDGKDHERRELVVFITPRII 409


>gi|205357592|ref|ZP_03223780.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205330642|gb|EDZ17406.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
          Length = 426

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  +    S G   +
Sbjct: 174 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 232

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 233 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQ 291

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 292 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 351

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 352 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 411

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 412 RELVVFITPRLV 423


>gi|261341890|ref|ZP_05969748.1| type IV pili biogenesis protein PilQ [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315792|gb|EFC54730.1| type IV pili biogenesis protein PilQ [Enterobacter cancerogenus
           ATCC 35316]
          Length = 403

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 138/319 (43%), Gaps = 21/319 (6%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG------- 172
            A  +   +   A    +   +   +V HG+  +  D+    + +E  LS  G       
Sbjct: 84  TAAWQQAQQTRKAQEQAQ-RQLDAPLVSHGISFSYADAGELQKAAEKLLSPKGSLSVDKR 142

Query: 173 RNQYANSSSKKVMNLLNIAGED------QVTLKVTIAEVRRDILKQIGFQHSITGSS--- 223
            N+     ++ V++ L    E       QV L   I  +    L+++G + ++  +S   
Sbjct: 143 TNRLLVRDNQTVLDTLVRWAEQMDLPIDQVELAAHIVTINEKSLRELGVKWNLAEASEAG 202

Query: 224 -SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
             G   +  AD      +    F++ G +D    +  L ALE+   +  +A P L A   
Sbjct: 203 RVGEVTALGADLSVANATTHVGFNI-GRIDGRLLDLELSALEQKQQVDIIASPRLLASHM 261

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TP VL  GR+ L++    + P  V
Sbjct: 262 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPVVLPGGRVRLKLHISENMPGQV 321

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G+  +   ++ +T VE+ SG T+ L G+     +   + +P L +IP LG LFR+
Sbjct: 322 LQQADGETLAIDKQEIETQVEVKSGETLALGGIFSQKNKTGSDSVPGLGRIPWLGQLFRH 381

Query: 401 SRFNREETEIFIAATPFLV 419
              + E  E+ +  TP LV
Sbjct: 382 DGKDNERRELVVFITPRLV 400


>gi|322830997|ref|YP_004211024.1| type IV pilus secretin PilQ [Rahnella sp. Y9602]
 gi|321166198|gb|ADW71897.1| type IV pilus secretin PilQ [Rahnella sp. Y9602]
          Length = 420

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 88/434 (20%), Positives = 181/434 (41%), Gaps = 32/434 (7%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPI--KEANAAVINISDVEIGKGKKISIGLNKVI 58
           M+Y+ +    ++ +     +P  A  PP+   E  ++ + +    +   +++++     +
Sbjct: 1   MKYVNKRI--VLFLLCLCLSPVKAGTPPLISLEFQSSPVGLVLQALADARQLNLVTAPGL 58

Query: 59  ILQVPVDVQDVLVSDP--TKADVVVHSPRTMYLFGKNVGQANVILIG-HDGKQMLNLDIL 115
             Q+ V ++DV    P     D+++       L  +  G  NV+L+   +  Q++   I 
Sbjct: 59  DGQMSVKLKDV----PWQQALDIILQMNH---LTSQLQG--NVLLVSPEEDPQVVQQRIK 109

Query: 116 IERDIAHLEMTLRRF-----IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
              D   L+  L         AD+      ++      G + + + +  A   + T L +
Sbjct: 110 DAADQQALQSPLISLTVPLQYADAKETALSLNAQ---KGSLLSQKGNASADTRTNTLLLR 166

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
             +      +    +  +++    QV L   I  +  + L+++G +   TG         
Sbjct: 167 DTQAALDVVAPW--VKEMDLPL-QQVQLAAHIVTMNSESLRELGVRWGFTGEEPITKAVR 223

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASF 287
             +F      E   F+    L   S    +  L ALE+   +  +A P L     Q+AS 
Sbjct: 224 MNNFSMGMPVENPIFTAGFNLAHISGRILDLELTALEQEDKVDIIASPRLLTAHMQTASI 283

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NA 345
             G +  Y+  S ++G+TS+   +  + +   P +   GRI L +Q   + P   +  + 
Sbjct: 284 KQGTEIPYQVSSGASGSTSIEFKEAVLGMEVMPKIQRDGRIQLALQISQNMPGRSIKQSE 343

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           G+  +   ++  T V + +G TIVL G+ +   Q+    +P+L  IP++G+LF++   N 
Sbjct: 344 GEALAIDKQEIKTQVTVKNGETIVLGGIFQRKNQKTDTKVPVLGDIPVVGSLFKHQYTNE 403

Query: 406 EETEIFIAATPFLV 419
           +  E+ I  TP L+
Sbjct: 404 QRRELVIFITPTLI 417


>gi|325576567|ref|ZP_08147285.1| type IV pilus secretin PilQ [Haemophilus parainfluenzae ATCC 33392]
 gi|325161130|gb|EGC73245.1| type IV pilus secretin PilQ [Haemophilus parainfluenzae ATCC 33392]
          Length = 460

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 119/311 (38%), Gaps = 20/311 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G + +   +    + S   L Q       N   KK++  L+   E Q+ ++  I  +  
Sbjct: 152 SGSLLSPSGTITFDDRSNVLLIQDDARSLKN--IKKLIAELDKPIE-QIVIEARIVTITD 208

Query: 208 DILKQIGFQHSI---------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + LK++G +  I                   S  S +   +F       G        ++
Sbjct: 209 ESLKELGVRWGIFNPTEAAHRVGGSLDANGFSNISNNLNVNFATTVTPAGSLALQVAKIN 268

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
               +  L ALER   +  +A P L   + +SAS   G +  Y   +      SV   + 
Sbjct: 269 GRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDTQSVEFREA 328

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            + L  TP +     I L +    + P   +     ++ S   ++ +T V    G TIVL
Sbjct: 329 VLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVL 388

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            G+  D I +  + +PLL  IP +  LF       ++ E+ I  TP ++K     +++R 
Sbjct: 389 GGVFHDTITKGVDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMARK 448

Query: 431 DDHYSVEDDAK 441
           + H+   +  K
Sbjct: 449 EKHFKQVEKVK 459


>gi|327399337|ref|YP_004340206.1| type IV pilus secretin PilQ [Hippea maritima DSM 10411]
 gi|327181966|gb|AEA34147.1| type IV pilus secretin PilQ [Hippea maritima DSM 10411]
          Length = 704

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/271 (23%), Positives = 122/271 (45%), Gaps = 33/271 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------- 225
           KK++++++   +  V +   I E+ +   +Q+G Q      +                  
Sbjct: 434 KKIVSIID-QKKRAVEIDARIVEISKSFERQLGIQWGGNFFNQNINNSKTFIGVGGSSSP 492

Query: 226 --------PSKSFAADFGGKFVSEGGD--------FSVKGVLDRFSFETVLHALERATAI 269
                   PS+SF+ D     +  G           ++  VL  ++ +  L   E     
Sbjct: 493 VDVSSGLPPSESFSNDNFVVNLPAGLSDAPTSTVRLAIGNVLANYNLDLKLTMGEIEGYS 552

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           + L+ P +  +  + A  +SG +  Y+  + ++GATSV+  +  + L  TP +    ++ 
Sbjct: 553 KVLSTPKVITLDNEPAKISSGQEIPYQESAGASGATSVSFKEATLSLEVTPHITRNDQVI 612

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           L+++ +   P    + G  P     + D+TV L +G TIV+ GL++   Q+   G+P L 
Sbjct: 613 LKLKIKKDSPDYSHSVGGEPPINTNEVDSTVILSNGQTIVIGGLMQSTTQKTVSGVPGLM 672

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +IP+LG LF+  R    +TE++I  TP +VK
Sbjct: 673 RIPLLGWLFKTKRIYNPKTELYIFVTPHIVK 703


>gi|16766776|ref|NP_462391.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16422046|gb|AAL22350.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|261248643|emb|CBG26481.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995705|gb|ACY90590.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160031|emb|CBW19550.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914512|dbj|BAJ38486.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|323131847|gb|ADX19277.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332990340|gb|AEF09323.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 412

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  +    S G   +
Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|207858728|ref|YP_002245379.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206710531|emb|CAR34889.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 412

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  +    S G   +
Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|319795562|ref|YP_004157202.1| type II and iii secretion system protein [Variovorax paradoxus EPS]
 gi|315598025|gb|ADU39091.1| type II and III secretion system protein [Variovorax paradoxus EPS]
          Length = 533

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/456 (19%), Positives = 175/456 (38%), Gaps = 37/456 (8%)

Query: 25  KLPPIKEANAAVINISDVEIGKGK---KISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
             PP     A +  I+       +    +++ + +++++++P  V  V + +    +  V
Sbjct: 69  TPPPQAVDEAELQRIAARATVMQRLPDSLTLYVGQMVLVKMPG-VARVAIGNGKVMEARV 127

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEM 140
                M +  ++ G + + +    G        +   D+  +   LR      S + +  
Sbjct: 128 LDGANMLITAQDGGDSTLHVWDKSGGIRKVKVRVNVVDLDRIAGELREITRGISGVNIRR 187

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           V + +++ G        +R   +++ +         A+           I  +  V ++V
Sbjct: 188 VGERIIMDGNSLDPAAVERLNTVAQLYAPAVVSLATAD----------RIRVDRMVDIQV 237

Query: 201 TIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG--------- 249
            I E  ++ L  +G +   S  G + G     A+    + + +G  F+            
Sbjct: 238 RIVEFSKNALDDLGVRWQTSGDGFNFGLFSDIASSGSYRVLPDGSAFNTSTPQGTALLSQ 297

Query: 250 --------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                   +    +  + ++   +      LA P L+  SG  A + +GG+     +S+ 
Sbjct: 298 NRRTPQAYLGIGLTLGSQINLQVQRGNAFLLASPNLSTRSGGEAKYLAGGEIPLPALSTQ 357

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            GA SV    YGV L+  P     G I   I TEVS     V    +P   +R+ DT   
Sbjct: 358 -GAGSVEFKPYGVRLNIKPIADGEGNISGSILTEVSSIDPSVAVQGIPGLLIRRTDTEFN 416

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + +G TIVL+GLL  +  +  +G+P L   P++G  FR  +   +E E+ +  TP +V  
Sbjct: 417 VKTGETIVLSGLLSRESSRASDGLPGLRNTPVIGRAFRADKDIDKEQEVVVFITPRVVDA 476

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
              +   R +    +E D  + F         P+ A
Sbjct: 477 AWSQ--PRVERARQIEQDVGSNFGTLTEDKSDPRGA 510


>gi|194470789|ref|ZP_03076773.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205358599|ref|ZP_02657680.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194457153|gb|EDX45992.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205333155|gb|EDZ19919.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 426

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 174 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 232

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 233 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 291

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 292 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 351

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 352 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 411

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 412 RELVVFITPRLV 423


>gi|194446460|ref|YP_002042738.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194405123|gb|ACF65345.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 426

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 174 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 232

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 233 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 291

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 292 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 351

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 352 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 411

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 412 RELVVFITPRLV 423


>gi|301155450|emb|CBW14916.1| predicted fimbrial transporter [Haemophilus parainfluenzae T3T1]
          Length = 460

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 118/311 (37%), Gaps = 20/311 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G + +   +    + S   L Q       N   KK++  L+   E Q+ ++  I  +  
Sbjct: 152 SGSLLSPSGTITFDDRSNVLLIQDDARSVKN--IKKLIAELDKPIE-QIVIEARIVTITD 208

Query: 208 DILKQIGFQHSI---------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + LK++G +  I                   S    +   +F       G        ++
Sbjct: 209 ESLKELGVRWGIFNPTEAAHRVSGSLDANGFSNIGDNLNVNFATTVTPAGSLALQVAKIN 268

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
               +  L ALER   +  +A P L   + +SAS   G +  Y   +      SV   + 
Sbjct: 269 GRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDTQSVEFREA 328

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            + L  TP +     I L +    + P   +     ++ S   ++ +T V    G TIVL
Sbjct: 329 VLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVL 388

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            G+  D I +  + +PLL  IP +  LF       ++ E+ I  TP ++K     ++++ 
Sbjct: 389 GGVFHDTITKGIDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMAKK 448

Query: 431 DDHYSVEDDAK 441
           + H+   +  K
Sbjct: 449 EKHFKQVEKVK 459


>gi|304397810|ref|ZP_07379686.1| type IV pilus secretin PilQ [Pantoea sp. aB]
 gi|304354521|gb|EFM18892.1| type IV pilus secretin PilQ [Pantoea sp. aB]
          Length = 423

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 117/257 (45%), Gaps = 7/257 (2%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--- 230
              A   +++ +  L++  E Q+ L   I  +  + L+++G +  +    +  +      
Sbjct: 165 TAAALKETERWIRALDLPLE-QIELSAHIVTISEEHLQELGVKWGLQAGDAAVTDILHHP 223

Query: 231 AADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             D      S G    +    +     +  L ALE+   I  +A P L     Q+AS   
Sbjct: 224 RLDIPLALSSPGISVGMALARIGGQLLDLELSALEQENQIEIIASPRLFTSHQQTASIKQ 283

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347
           G +  Y+  + ++GATS+   +  + +  TPT+   GRI L+I+   + P   +  GD  
Sbjct: 284 GTEIPYEVSAGNSGATSIEFKEAVLGMEVTPTLSGNGRIQLKIRISQNMPGRSIRTGDSN 343

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + S   ++ +T V +  G T+ L G+ +    + +  +PLL  +P++G LFR     R++
Sbjct: 344 ILSIDKQEIETQVTVSDGQTLALGGIFQQQRSRGENKVPLLGNVPLIGGLFRQQSEQRKK 403

Query: 408 TEIFIAATPFLVKPVAM 424
            E+ I  TP LV+  A+
Sbjct: 404 RELVIFITPRLVREAAL 420


>gi|194451757|ref|YP_002047512.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205359079|ref|ZP_03224213.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194410061|gb|ACF70280.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338987|gb|EDZ25751.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 426

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 174 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 232

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 233 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 291

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 292 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 351

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 352 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 411

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 412 RELVVFITPRLV 423


>gi|238913611|ref|ZP_04657448.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 412

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|321226537|gb|EFX51587.1| Type IV pilus biogenesis protein PilQ [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
          Length = 389

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  +    S G   +
Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 195

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQ 254

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 375 RELVVFITPRLV 386


>gi|320087902|emb|CBY97664.1| Protein transport protein hofQ Flags: Precursor [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 412

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|205359546|ref|ZP_03224342.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205344340|gb|EDZ31104.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
          Length = 429

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 177 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 235

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 236 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 294

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 295 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 354

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 355 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 414

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 415 RELVVFITPRLV 426


>gi|62181990|ref|YP_218407.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129623|gb|AAX67326.1| putative transport protein, possibly in biosynthesis of type IV
           pilin [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322716478|gb|EFZ08049.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 412

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVAT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|157148976|ref|YP_001456295.1| outer membrane porin HofQ [Citrobacter koseri ATCC BAA-895]
 gi|157086181|gb|ABV15859.1| hypothetical protein CKO_04814 [Citrobacter koseri ATCC BAA-895]
          Length = 412

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +QV L   I  +    L+++G + ++  +    S G   S A+D      +    F++ G
Sbjct: 179 EQVELAAHIVTINEKSLRELGVKWTLADAQLAGSPGQVTSLASDLSVAAATSRVGFNI-G 237

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV  
Sbjct: 238 RINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEF 297

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367
            +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ DT VE+ SG T
Sbjct: 298 KEAVLGMEVTPTVLPKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIDTQVEVKSGET 357

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L G+     +  K+ +PLL  IP LG+LF +     E  E+ +  TP LV
Sbjct: 358 LALGGIFSRKNKSAKDSVPLLGDIPWLGSLFSHDGKENERRELVVFITPRLV 409


>gi|16762799|ref|NP_458416.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144286|ref|NP_807628.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213053391|ref|ZP_03346269.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213416770|ref|ZP_03349914.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213426742|ref|ZP_03359492.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213646579|ref|ZP_03376632.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213852697|ref|ZP_03382229.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|25324276|pir||AB1000 type II secretion system protein [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505105|emb|CAD08126.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139923|gb|AAO71488.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 412

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|161505946|ref|YP_001573058.1| outer membrane porin HofQ [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867293|gb|ABX23916.1| hypothetical protein SARI_04127 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 400

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  +      G    
Sbjct: 148 NRTALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADAQQAGAVGDVTM 206

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 207 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 265

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 266 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 325

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP LG LFR+     E 
Sbjct: 326 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGRDSVPLLGDIPWLGQLFRHDGKEDER 385

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 386 RELVVFITPRLV 397


>gi|170721354|ref|YP_001749042.1| general secretion pathway protein D [Pseudomonas putida W619]
 gi|169759357|gb|ACA72673.1| general secretion pathway protein D [Pseudomonas putida W619]
          Length = 745

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 119/313 (38%), Gaps = 14/313 (4%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V+++++S R      +               +  +  L+     QV ++  I EV+ 
Sbjct: 434 DGSVKSLEESVRITAQKSSNQLLVRTRPAQWKEIESAIKRLDSP-PLQVQIETRILEVKL 492

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFETVLH 261
                +G Q  +   +   S +  A+  G   + G      G    F      + +  L 
Sbjct: 493 TGDLDLGVQWYLGRLAGNSSSTTVANESGSQGALGAGGVALGSASMFYSFVSSNLQVALR 552

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDYGVVL 316
           ALE     + L+ P+L  ++ Q A    G           T  S T  +SV     GV+L
Sbjct: 553 ALETRGLTQVLSAPSLVVLNNQQAQIQVGDNIPISQTTVNTSDSDTTLSSVEYVQTGVIL 612

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
              P +   G + + IQ +VS+            P    R   T V + SG T++L GL+
Sbjct: 613 DVVPRINPGGLVYMDIQQQVSDADDSAVTTTQPNPRISSRAVSTQVAVQSGQTVLLGGLI 672

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           K D  Q    +P LS IP LG LF ++  +R+ TE+ +  TP +V           D   
Sbjct: 673 KQDNGQSDTRVPGLSSIPGLGWLFGSTSKSRDRTELIVLITPRVVNNPEQARQVTADYRQ 732

Query: 435 SVEDDAKAFFFNR 447
            ++   +     R
Sbjct: 733 QMQVLREQAALKR 745


>gi|322629821|gb|EFY26594.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322659197|gb|EFY55449.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|323227365|gb|EGA11531.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323245960|gb|EGA29947.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250737|gb|EGA34615.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323261394|gb|EGA44980.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
          Length = 412

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|200387767|ref|ZP_03214379.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604865|gb|EDZ03410.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 389

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  +    S G   +
Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 195

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 375 RELVVFITPRLV 386


>gi|56415404|ref|YP_152479.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364334|ref|YP_002143971.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129661|gb|AAV79167.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095811|emb|CAR61383.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 412

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|205360346|ref|ZP_02682767.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205350396|gb|EDZ37027.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 389

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  +    S G   +
Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 195

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 375 RELVVFITPRLV 386


>gi|213585294|ref|ZP_03367120.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 412

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +G TSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGTTSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|197265045|ref|ZP_03165119.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197243300|gb|EDY25920.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 426

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 174 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 232

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 233 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 291

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  G I L++    + P  V+    G+
Sbjct: 292 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGLIRLKLHISQNVPGQVLQQADGE 351

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 352 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 411

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 412 RELVVFITPRLV 423


>gi|289824820|ref|ZP_06544263.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 389

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 195

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 375 RELVVFITPRLV 386


>gi|156936449|ref|YP_001440365.1| outer membrane porin HofQ [Cronobacter sakazakii ATCC BAA-894]
 gi|156534703|gb|ABU79529.1| hypothetical protein ESA_04350 [Cronobacter sakazakii ATCC BAA-894]
          Length = 390

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  + +  L+++G + S   +    +     + +AD      +    F++ G 
Sbjct: 158 QVELAAHIVTINQQSLRELGVKWSTADADGPTTLYHPTTISADLAVANATTRLGFNI-GR 216

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +D    E  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 217 IDGRMLEFELSALEQKQKVEIIASPRLLAAHQQPASIKQGSEIPYQVSSGESGATSVEFK 276

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPT+   GRI L+++   + P   +    G++ +   ++ +T VE+  G T+
Sbjct: 277 EAVLGMEVTPTIGQDGRIKLKLRISQNMPGQALQQADGEVLAIDKQEIETQVEVKDGETL 336

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+ +   +   E +P+L  IP+ G+LFR+   + E+ E+ +  TP ++
Sbjct: 337 ALGGIFQQKNKAGNEQVPVLGNIPLFGSLFRHDGKDNEKRELVVFITPRII 387


>gi|322614138|gb|EFY11074.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618029|gb|EFY14922.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625356|gb|EFY22182.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322632290|gb|EFY29041.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636359|gb|EFY33066.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643215|gb|EFY39784.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644783|gb|EFY41319.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651192|gb|EFY47576.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654940|gb|EFY51255.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322663102|gb|EFY59306.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668588|gb|EFY64741.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674608|gb|EFY70701.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678186|gb|EFY74247.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682557|gb|EFY78578.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684270|gb|EFY80276.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192175|gb|EFZ77407.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196399|gb|EFZ81551.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201800|gb|EFZ86863.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206342|gb|EFZ91303.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211936|gb|EFZ96763.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216841|gb|EGA01564.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222240|gb|EGA06623.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323228183|gb|EGA12314.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233550|gb|EGA17643.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323236988|gb|EGA21055.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243797|gb|EGA27813.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323255748|gb|EGA39498.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323267633|gb|EGA51115.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268514|gb|EGA51981.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 389

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 195

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 375 RELVVFITPRLV 386


>gi|270264426|ref|ZP_06192692.1| putative outer membrane porin HofQ [Serratia odorifera 4Rx13]
 gi|270041562|gb|EFA14660.1| putative outer membrane porin HofQ [Serratia odorifera 4Rx13]
          Length = 414

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 5/231 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +  + L+++G +  +             DF      E    S    L R 
Sbjct: 183 QVQLAAHIVTINSESLRELGVRWGLAPDEGAAKPLRMGDFNVSLPLERSAVSAGFHLARI 242

Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                +  L ALE+   +  +A P L     Q+AS   G +  Y+  S S+GATS+   +
Sbjct: 243 GGRLLDLELMALEQENRVEIIASPRLLTAHQQTASIKQGTEIPYEVKSGSSGATSMEFKE 302

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIV 369
             + +  TP +L  GRI L +Q   + P   ++  D  +     ++  T V +  G TIV
Sbjct: 303 AVLGMEVTPKILPNGRITLTLQISQNMPGRSISRADGEALAIDKQEIKTQVTVKDGETIV 362

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L G+ +    Q  + +P L  IP+LG+LF+ S    +  E+ I  TP L+K
Sbjct: 363 LGGVFQRQSAQGADKVPGLGDIPLLGSLFKQSTKQHKRRELVIFITPTLIK 413


>gi|330862294|emb|CBX72455.1| hypothetical protein YEW_HH31870 [Yersinia enterocolitica W22703]
          Length = 271

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 88/263 (33%), Positives = 144/263 (54%), Gaps = 20/263 (7%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           MN + + G +QV +K+TIAEV +D  + IG   S  G+ SG  + F  +   KF ++G  
Sbjct: 1   MNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSGSFQFFKLNGSNKFNAKG-- 58

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                         ++HA+   +  R LAEP L+ +SG+SASF  GG+     V+++  +
Sbjct: 59  -----------ISALVHAINDDSIARVLAEPNLSVLSGESASFLVGGELP--LVNTTANS 105

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDM-PSYRVRKADTTVE 361
           T +T   +G+ L+    V +  RI +++  EVS    V  ++ GD  PS+R RKA TT+E
Sbjct: 106 TVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNIDGGDAYPSFRTRKAATTLE 165

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L  G + +L GL+    ++  + IP +  IPILGA FRN+   + +TE+ + AT  LV+P
Sbjct: 166 LGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFRNAETRKNQTELVVVATVNLVRP 225

Query: 422 VAMRDLSRPDDHYSVEDDAKAFF 444
           V+ +++  P  ++      + FF
Sbjct: 226 VSEKEVELP--NFMHTSTLERFF 246


>gi|195873801|ref|ZP_02699139.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197248588|ref|YP_002148409.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|195632392|gb|EDX50876.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197212291|gb|ACH49688.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 389

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 195

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 375 RELVVFITPRLV 386


>gi|204928849|ref|ZP_03220048.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322282|gb|EDZ07480.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 389

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  +    S G   +
Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 195

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  ++    G+
Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQILQQADGE 314

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 375 RELVVFITPRLV 386


>gi|310765643|gb|ADP10593.1| Protein transport protein hofQ precursor [Erwinia sp. Ejp617]
          Length = 414

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 135/313 (43%), Gaps = 31/313 (9%)

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI--QDSQRAVELSETFLSQSGR 173
           +  D A +  +L+        R+     ++ L     ++  +D+++A+  +E ++ Q   
Sbjct: 123 VHADAASVNTSLQ----HERARLMSARGSITLDSRTNSLLLRDTEKALAQTEHWVHQ--- 175

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKS 229
                         L++  E Q+ L   I  +  + L+++G    ++G    + +  +  
Sbjct: 176 --------------LDVPLE-QIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQ 220

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              D      +    F++   LD    +  L ALE       +A P L     Q+AS   
Sbjct: 221 LRVDLATGRPAGVVGFTLA-KLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQ 279

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347
           G +  Y+  + ++G+T++   +  + +  TP V + GRI L++    + P   + +G+  
Sbjct: 280 GTEIPYEVSTGNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENE 339

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ DT V L  G T+ L G+ +         +P L  IP+LG LFR+    ++ 
Sbjct: 340 VLTIDKQEIDTQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKR 399

Query: 408 TEIFIAATPFLVK 420
            E+ I  TP L++
Sbjct: 400 RELVIFITPRLIR 412


>gi|68249035|ref|YP_248147.1| competence protein E [Haemophilus influenzae 86-028NP]
 gi|148825285|ref|YP_001290038.1| competence protein E [Haemophilus influenzae PittEE]
 gi|59939227|gb|AAX12385.1| ComE [Haemophilus influenzae]
 gi|68057234|gb|AAX87487.1| competence protein E [Haemophilus influenzae 86-028NP]
 gi|148715445|gb|ABQ97655.1| competence protein E [Haemophilus influenzae PittEE]
          Length = 445

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVK 420
            ++K
Sbjct: 426 HILK 429


>gi|283480139|emb|CAY76055.1| Protein transport protein hofQ precursor [Erwinia pyrifoliae DSM
           12163]
          Length = 414

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 136/313 (43%), Gaps = 31/313 (9%)

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI--QDSQRAVELSETFLSQSGR 173
           +  D A +  +L+R       R+     ++ L     ++  +D+++A+  +E ++ Q   
Sbjct: 123 VHADAASVNTSLQR----ERARLMSARGSITLDSRTNSLLLRDTEKALAQTEHWVHQ--- 175

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKS 229
                         L++  E Q+ L   I  +  + L+++G    ++G    + +  +  
Sbjct: 176 --------------LDVPLE-QIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQ 220

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              D      +    F++   LD    +  L ALE       +A P L     Q+AS   
Sbjct: 221 LRVDLATGRPAGVVGFTLA-KLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQ 279

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347
           G +  Y+  + ++G+T++   +  + +  TP V + GRI L++    + P   + +G+  
Sbjct: 280 GTEIPYEVSTGNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENE 339

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ DT V L  G T+ L G+ +         +P L  IP+LG LFR+    ++ 
Sbjct: 340 VLTIDKQEIDTQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKR 399

Query: 408 TEIFIAATPFLVK 420
            E+ I  TP L++
Sbjct: 400 RELVIFITPRLIR 412


>gi|319775638|ref|YP_004138126.1| competence protein E [Haemophilus influenzae F3047]
 gi|317450229|emb|CBY86445.1| competence protein E [Haemophilus influenzae F3047]
          Length = 445

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVK 420
            ++K
Sbjct: 426 HILK 429


>gi|301169135|emb|CBW28732.1| predicted fimbrial transporter [Haemophilus influenzae 10810]
          Length = 445

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IPI+  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPIIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVK 420
            ++K
Sbjct: 426 HILK 429


>gi|238750896|ref|ZP_04612393.1| Type II/III secretion system protein [Yersinia rohdei ATCC 43380]
 gi|238710810|gb|EEQ03031.1| Type II/III secretion system protein [Yersinia rohdei ATCC 43380]
          Length = 316

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 143/321 (44%), Gaps = 29/321 (9%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           S    AD  +    ++ ++ KN G A  IL   + K +    +++   I      ++   
Sbjct: 2   SAAAIADYELVGKNSVIVYAKNEGVAEFILFDQNHKPITKSVVMVNNIITLATKRIQAEY 61

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS----QSGRNQYANSSS-KKVMN 186
             S I +  + ++ +L G V + +     V +    +     +   NQY N++    ++N
Sbjct: 62  PGSIIDISKIGNSYILTGTVESEEARDTIVNIVGEAIGSKKNKGSDNQYINTNDYPGIVN 121

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
            + +   +QV +K+TIAEV +D  + IG   S  G++ G  + F              F+
Sbjct: 122 KIKLPQSNQVNVKLTIAEVTKDFTENIGINWSTIGNNVGAFQFF-------------QFN 168

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
            KG+       T++HA+      R LAEP L+ +SG++ASF  GG+      S+S     
Sbjct: 169 AKGI------STLVHAINDDAIARVLAEPNLSVLSGETASFLVGGEIPI--ASTSQNGVK 220

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELP 363
           +   ++G+ L+    V    RI + +  EVS      N       PS R RKA TT+EL 
Sbjct: 221 IDYKEFGIKLNIGAKVNDKKRIRIMLNEEVSSIGKSFNVTGGDSYPSLRTRKAATTLELG 280

Query: 364 SGGTIVLAGLLKDDIQQLKEG 384
            G + +L GL+  + ++  + 
Sbjct: 281 DGESFILGGLISSNERESLKK 301


>gi|260582299|ref|ZP_05850092.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
           NT127]
 gi|260094667|gb|EEW78562.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
           NT127]
          Length = 447

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 103/251 (41%), Gaps = 17/251 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKPVAMRDL 427
            ++K     D+
Sbjct: 426 HILKAGETLDV 436


>gi|205356871|ref|ZP_02343070.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205325673|gb|EDZ13512.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 389

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  +    S G   +
Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELVAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 195

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEEER 374

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 375 RELVVFITPRLV 386


>gi|330957039|gb|EGH57299.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 692

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 113/264 (42%), Gaps = 14/264 (5%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
           + Q      +++++ L+I    QV ++  I E   D  K++G +     ++SG S     
Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYDKELGVRWGGATNTSGSSNWSTG 485

Query: 233 DFGGKFVSEGGDF------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
              G   +    F             +  + +    +  L A+E+      +++P +   
Sbjct: 486 TAAGGSTANSSTFVDMGAANATSGIGLGFLTNNTMLDLELTAMEKTGNGEIVSQPKVVTS 545

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
             ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + ++    EP 
Sbjct: 546 DKETAKILKGTEVPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPD 604

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                  +P  +  + +  V +  G TIV+ G+  +   +  + +P L  +P LG LFR 
Sbjct: 605 YVNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKSVDKVPFLGDVPYLGRLFRR 664

Query: 401 SRFNREETEIFIAATPFLVKPVAM 424
              +  ++E+ +  TP ++   A+
Sbjct: 665 DVVSESKSELLVFLTPRIMNNQAI 688


>gi|229846521|ref|ZP_04466629.1| competence protein E [Haemophilus influenzae 7P49H1]
 gi|229810614|gb|EEP46332.1| competence protein E [Haemophilus influenzae 7P49H1]
          Length = 445

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVK 420
            ++K
Sbjct: 426 HILK 429


>gi|260599692|ref|YP_003212263.1| outer membrane porin HofQ [Cronobacter turicensis z3032]
 gi|260218869|emb|CBA34224.1| Protein transport protein hofQ [Cronobacter turicensis z3032]
          Length = 390

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  + +  L+++G + S   +          + +AD      +    F++ G 
Sbjct: 158 QVELAAHIVTINQQSLRELGVKWSTADAEGATKLYHPTTVSADLAVANATTRLGFNI-GR 216

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +D    E  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 217 IDGRMLEFELSALEQKQKVEIIASPRLLAAHQQPASIKQGSEIPYQVSSGESGATSVEFK 276

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPT+   GRI L+++   + P   +    G++ +   ++ +T VE+  G T+
Sbjct: 277 EAVLGMEVTPTIGQGGRIRLKLRISQNMPGQALQQADGEVLAIDKQEIETQVEVKDGETL 336

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+ +   +   E +P+L  IP+LG+LFR+   ++E+ E+ +  TP ++
Sbjct: 337 ALGGIFQQKNKTGNEQVPVLGNIPLLGSLFRHDGKDKEKRELVVFITPRII 387


>gi|85705572|ref|ZP_01036670.1| type II and III secretion system protein [Roseovarius sp. 217]
 gi|85669997|gb|EAQ24860.1| type II and III secretion system protein [Roseovarius sp. 217]
          Length = 441

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 93/450 (20%), Positives = 181/450 (40%), Gaps = 42/450 (9%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           + ++        +++++   K I+L V  +V  V VSD T AD  + S   +++FGK VG
Sbjct: 22  LPSVLSSPASAQERLTVEQGKSILLPVGDNVDTVFVSDTTVADASISSNNRVFVFGKEVG 81

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           + ++I         +   +++   ++ +   ++       I VE    ++++ G+V + +
Sbjct: 82  ETSLIATSTYADSDMTFTVVVTHKLSEIRSVIQSRFPGEQIAVESSRGSLMITGIVSSDR 141

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
             +  V   E+   ++            +++ L +A  + + L+V + EV R  ++  G 
Sbjct: 142 VRETLVTTLESAAPET-----------TIIDRLRVASSNIIRLEVKLLEVSRTQVENFGI 190

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
             + T +++G    F        +S G     K      S    L  L          E 
Sbjct: 191 DWNATVTANGF---FLGTSNRGVLSVG-----KSDTAESSLNAALDVLISNGIATIAQET 242

Query: 276 TLTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            L+ ++G+ A F+ GG+    T       SS G   +     G  L FTP++    ++ L
Sbjct: 243 VLSTVNGEEALFSVGGEIPIPTFIPVDSGSSDGNFQLDFKFIGTSLSFTPSIAPGNKLRL 302

Query: 331 RIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL--KEGI 385
            I + +S   +    VN    P+   R   T VEL      V+AG+ ++D      ++  
Sbjct: 303 LIDSTISSQGQTSSTVNGNVFPNLNTRSFRTNVELSDRQPFVIAGVTRNDTSNDLRQDRG 362

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFL--VKPVAMRDLSRPDDHYSVEDDAKAF 443
             LS+I  + +L    R      E+ +  TP L  ++P ++++        +   +    
Sbjct: 363 TGLSRI--VDSLLGQDRVTANSQELVVIVTPLLTELEPQSIQERLP-----APLSNLGFI 415

Query: 444 FFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
             NR ++     E       N  GA GF Y
Sbjct: 416 LSNRDSRTAITHE----PRYNAFGAAGFRY 441


>gi|259910041|ref|YP_002650397.1| putative outer membrane porin HofQ [Erwinia pyrifoliae Ep1/96]
 gi|224965663|emb|CAX57195.1| outer membrane porin [Erwinia pyrifoliae Ep1/96]
          Length = 406

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 136/313 (43%), Gaps = 31/313 (9%)

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI--QDSQRAVELSETFLSQSGR 173
           +  D A +  +L+R       R+     ++ L     ++  +D+++A+  +E ++ Q   
Sbjct: 115 VHADAASVNTSLQR----ERARLMSARGSITLDSRTNSLLLRDTEKALAQTEHWVHQ--- 167

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKS 229
                         L++  E Q+ L   I  +  + L+++G    ++G    + +  +  
Sbjct: 168 --------------LDVPLE-QIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQ 212

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              D      +    F++   LD    +  L ALE       +A P L     Q+AS   
Sbjct: 213 LRVDLATGRPAGVVGFTLA-KLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQ 271

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347
           G +  Y+  + ++G+T++   +  + +  TP V + GRI L++    + P   + +G+  
Sbjct: 272 GTEIPYEVSTGNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENE 331

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ DT V L  G T+ L G+ +         +P L  IP+LG LFR+    ++ 
Sbjct: 332 VLTIDKQEIDTQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKR 391

Query: 408 TEIFIAATPFLVK 420
            E+ I  TP L++
Sbjct: 392 RELVIFITPRLIR 404


>gi|224585282|ref|YP_002639081.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469810|gb|ACN47640.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 379

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G + ++  ++     G   + ++D      +    F++ G 
Sbjct: 147 QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVATLSSDLSVAAATSRVGFNI-GR 205

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 206 INGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 265

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+ SG T+
Sbjct: 266 EAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETL 325

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 326 ALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 376


>gi|289806224|ref|ZP_06536853.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 295

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 43  NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 101

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 102 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 160

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 161 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 220

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 221 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 280

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 281 RELVVFITPRLV 292


>gi|145630388|ref|ZP_01786169.1| competence protein E [Haemophilus influenzae R3021]
 gi|144984123|gb|EDJ91560.1| competence protein E [Haemophilus influenzae R3021]
          Length = 447

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVK 420
            ++K
Sbjct: 426 HILK 429


>gi|161616525|ref|YP_001590490.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161365889|gb|ABX69657.1| hypothetical protein SPAB_04341 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 389

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+   +  +K ++ +++    QV L   I  +    L+++G + ++  ++     G   +
Sbjct: 137 NRAVLAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 195

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++  +  R   +  L ALE+   +  +A P L A   Q AS   
Sbjct: 196 LSSDLSVAAATSRVGFNIGRISGRL-LDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 375 RELVVFITPRLV 386


>gi|145640400|ref|ZP_01795984.1| competence protein E [Haemophilus influenzae R3021]
 gi|145274986|gb|EDK14848.1| competence protein E [Haemophilus influenzae 22.4-21]
          Length = 445

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVK 420
            ++K
Sbjct: 426 HILK 429


>gi|329122312|ref|ZP_08250900.1| competence protein E [Haemophilus aegyptius ATCC 11116]
 gi|327473873|gb|EGF19290.1| competence protein E [Haemophilus aegyptius ATCC 11116]
          Length = 445

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 100/244 (40%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     +  S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEGVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVK 420
            ++K
Sbjct: 426 HILK 429


>gi|145628805|ref|ZP_01784605.1| competence protein E [Haemophilus influenzae 22.1-21]
 gi|145638655|ref|ZP_01794264.1| competence protein E [Haemophilus influenzae PittII]
 gi|144979275|gb|EDJ88961.1| competence protein E [Haemophilus influenzae 22.1-21]
 gi|145272250|gb|EDK12158.1| competence protein E [Haemophilus influenzae PittII]
 gi|309750149|gb|ADO80133.1| Outer membrane secretin ComE [Haemophilus influenzae R2866]
          Length = 445

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVK 420
            ++K
Sbjct: 426 HILK 429


>gi|205354888|ref|YP_002228689.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205274669|emb|CAR39723.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326630034|gb|EGE36377.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 412

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229
           N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  +    S G   +
Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGGIPWLGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|319898044|ref|YP_004136241.1| competence protein e [Haemophilus influenzae F3031]
 gi|317433550|emb|CBY81934.1| competence protein E [Haemophilus influenzae F3031]
          Length = 445

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 108/256 (42%), Gaps = 18/256 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS---- 227
           KK+++ ++   E Q+ ++  I  +  + LK++G +  I           GS +G S    
Sbjct: 175 KKLISEMDKPIE-QIAIEARIVTITDESLKELGIRWGIFNPTENARRVAGSLAGNSFENI 233

Query: 228 -KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
             +   +F       G        ++    +  L ALER   +  +A P L   + +SAS
Sbjct: 234 ADNLNVNFATTATPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSAS 293

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVN 344
              G +  Y   ++     SV   +  + L  TP +     I L +    + P   +   
Sbjct: 294 IKQGTEIPYVVSNTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYG 353

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
             ++ S   ++ +T V    G TIVL G+  D I + ++ +PLL  IP++  LF      
Sbjct: 354 QNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESER 413

Query: 405 REETEIFIAATPFLVK 420
            ++ E+ I  TP ++K
Sbjct: 414 HQKRELVIFVTPHILK 429


>gi|309972408|gb|ADO95609.1| Outer membrane secretin ComE [Haemophilus influenzae R2846]
          Length = 445

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVK 420
            ++K
Sbjct: 426 HILK 429


>gi|90407251|ref|ZP_01215438.1| type IV pilus biogenesis protein PilQ [Psychromonas sp. CNPT3]
 gi|90311674|gb|EAS39772.1| type IV pilus biogenesis protein PilQ [Psychromonas sp. CNPT3]
          Length = 739

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 115/288 (39%), Gaps = 18/288 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V  + D         T +           + K ++ +L+I    QV ++  +  V  
Sbjct: 449 SGDVSLLSDRGSVNVDKRTNMLLLKDTARVIKAVKNMIKVLDIP-VRQVVIEARMVTVND 507

Query: 208 DILKQIGFQHSITGSSSGPSKSFAAD------------FGGKFVSEGG--DFSVKGVLDR 253
            + +++G +   +  +   S S + D                 V   G   F +  +   
Sbjct: 508 SVGEELGIRWGNSNVNGDLSTSGSLDGLTNGSLDERLNVNLPVVGAAGRIAFRIAKLASG 567

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
              +  L ALE+      +A P +T    Q+A    G +  Y   S+S+GAT+V+     
Sbjct: 568 KILDLELSALEKENKAEIIASPRITTADQQTAYIEQGTEIPYVE-SASSGATAVSFKKAV 626

Query: 314 VVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           + L  TP +    +I L   I  +    VI    G   S   ++  T V + +G TIVL 
Sbjct: 627 LSLQVTPQITPDNKIILDLVITQDSKGDVIPTGLGQAVSINTQEIKTQVLVGNGETIVLG 686

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+ +  I    + +P L  IP LGALFR +     ++E+ I  TP LV
Sbjct: 687 GIYQQRIIDTVQKVPFLGDIPFLGALFRTTIKENRKSELLIFVTPRLV 734


>gi|145634568|ref|ZP_01790277.1| competence protein E [Haemophilus influenzae PittAA]
 gi|229844405|ref|ZP_04464545.1| competence protein E [Haemophilus influenzae 6P18H1]
 gi|145268113|gb|EDK08108.1| competence protein E [Haemophilus influenzae PittAA]
 gi|229812654|gb|EEP48343.1| competence protein E [Haemophilus influenzae 6P18H1]
          Length = 445

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLAGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVK 420
            ++K
Sbjct: 426 HILK 429


>gi|16272383|ref|NP_438596.1| competence protein E [Haemophilus influenzae Rd KW20]
 gi|260580502|ref|ZP_05848330.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
           RdAW]
 gi|1169008|sp|P31772|COME_HAEIN RecName: Full=Competence protein E; AltName: Full=DNA
           transformation protein ComE; Flags: Precursor
 gi|1573410|gb|AAC22094.1| competence protein E (comE) [Haemophilus influenzae Rd KW20]
 gi|260092844|gb|EEW76779.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
           RdAW]
          Length = 445

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVK 420
            ++K
Sbjct: 426 HILK 429


>gi|87120710|ref|ZP_01076603.1| general secretion pathway protein D [Marinomonas sp. MED121]
 gi|86163938|gb|EAQ65210.1| general secretion pathway protein D [Marinomonas sp. MED121]
          Length = 616

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/354 (22%), Positives = 148/354 (41%), Gaps = 27/354 (7%)

Query: 96  QAN-VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           + N +IL G  G+     D++I+ DI   + +  ++I         V+D  +L G+V  I
Sbjct: 231 RTNRLILKGKPGELNQIKDLIIKLDIPAEKTSRLQYIPLQYADATKVAD--LLKGVVGDI 288

Query: 155 QDSQ-RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------QVTLKVTIAEVRR 207
           +  +  A  L     +    N    +S   VM+ +    +       QV ++  I E+  
Sbjct: 289 EKKEGNAPTLETNIQADEDLNALLVNSEPGVMSEIYSVLKQIDVPRAQVLIEAVIVEITV 348

Query: 208 DILKQIGFQHSITGS----------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
              +++G Q  I GS          S+G S +  A       +         +L   +F 
Sbjct: 349 TDEEELGVQWLIGGSDEIISGTNFTSAGSSANTIASSINSSTANTLATGGTAILGDTNFG 408

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYG 313
            ++ AL+  T    L+ P +  +  Q A    G    ++T      S +   + +  D G
Sbjct: 409 AIIQALQSKTNSNLLSTPKILTLDNQEARILVGETRPFQTGEYSEDSDSTFVTTSREDVG 468

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-RKADTTVELPSGGTIVLAG 372
           + L  TP + S   + + +   V        A D+ +    R+ +T V      TIVL G
Sbjct: 469 LTLKVTPHINSGNEVKMEVFQTVE--SASDEASDLGTITTVREVETVVIAGDRQTIVLGG 526

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L++D+I + K+ +P L  +P +G LFR+S F+ ++  + +   P +++  A  D
Sbjct: 527 LIQDNITESKQKVPFLGDLPFVGGLFRSSSFSIDKKNLLVFIRPTIIRGKAKAD 580


>gi|145636296|ref|ZP_01791965.1| competence protein E [Haemophilus influenzae PittHH]
 gi|145270461|gb|EDK10395.1| competence protein E [Haemophilus influenzae PittHH]
          Length = 445

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVK 420
            ++K
Sbjct: 426 HILK 429


>gi|242237793|ref|YP_002985974.1| outer membrane porin HofQ [Dickeya dadantii Ech703]
 gi|242129850|gb|ACS84152.1| type IV pilus secretin PilQ [Dickeya dadantii Ech703]
          Length = 426

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 109/254 (42%), Gaps = 7/254 (2%)

Query: 178 NSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
           +S+ +++ + L++  +   QV L   I  +  + LK +G    +    +        +F 
Sbjct: 169 SSALEQIRSWLDVLDKPLAQVQLAAHIVTISSEHLKALGVNWGLDAGDATKQALRMNNFN 228

Query: 236 GKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                E    +    L R +    +  L ALE+   +  +A P L     Q+AS   G +
Sbjct: 229 INLPVETPTVNAGFHLARLNGRLLDLELMALEQEDEVEIIASPRLFTAHQQTASIKQGTE 288

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPS 350
             Y+  S ++G+TS+   +  + +  TP +L  G I L +    + P   +    G+M +
Sbjct: 289 IPYQVSSGASGSTSIEFKEAVLGMEVTPRILQGGFITLNLLISQNMPGRSIKQGEGEMLA 348

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++  T V +  G TIVL G+ +    + +  +P L  +P +G LF +S       E+
Sbjct: 349 IDKQEIQTQVTVKDGETIVLGGIFQQQKNRTERKVPGLGALPGIGRLFSSSDRQNTRREL 408

Query: 411 FIAATPFLVKPVAM 424
            I  TP L++    
Sbjct: 409 VIFITPTLIQASLP 422


>gi|325498932|gb|EGC96791.1| outer membrane porin HofQ [Escherichia fergusonii ECD227]
          Length = 385

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKS 229
           N+ A ++ +  ++ +++    QV L   I  +    L+++G + +          G   +
Sbjct: 133 NKTALAALEHWISEMDVPVG-QVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTT 191

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 192 LSSDLAVATATTQVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 250

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+  + G+
Sbjct: 251 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGE 310

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  K+ IPLL  IP LG LF +     E 
Sbjct: 311 VLTIDKQEIETQVEVKSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENER 370

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 371 RELVVFITPRLV 382


>gi|218550647|ref|YP_002384438.1| outer membrane porin HofQ [Escherichia fergusonii ATCC 35469]
 gi|218358188|emb|CAQ90835.1| fimbrial transporter [Escherichia fergusonii ATCC 35469]
          Length = 426

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKS 229
           N+ A ++ +  ++ +++    QV L   I  +    L+++G + +          G   +
Sbjct: 174 NKTALAALEHWISEMDVPVG-QVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTT 232

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 233 LSSDLAVATATTQVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 291

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+  + G+
Sbjct: 292 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGE 351

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  K+ IPLL  IP LG LF +     E 
Sbjct: 352 VLTIDKQEIETQVEVKSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENER 411

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 412 RELVVFITPRLV 423


>gi|283787974|ref|YP_003367839.1| fimbrial protein HofQ [Citrobacter rodentium ICC168]
 gi|282951428|emb|CBG91127.1| putative fimbrial protein HofQ [Citrobacter rodentium ICC168]
          Length = 412

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G + ++  + S    G   +  +D      +    F++ G 
Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLAEAQSTGAVGDVSTLGSDLSVAAATTRVGFNI-GR 238

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +D    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 239 IDGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 298

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP VL  GRI L++    + P  V+    G++ +   ++ DT VE+ SG T+
Sbjct: 299 EAVLGMEVTPVVLQKGRIRLKLHISQNMPGQVLQQADGEVLAIDKQEIDTQVEVKSGETL 358

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     ++ +E +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 359 ALGGIFSRKNKRGQESVPLLGDIPWLGQLFRHDGKENERRELVVFITPRLV 409


>gi|113461255|ref|YP_719324.1| competence protein E [Haemophilus somnus 129PT]
 gi|112823298|gb|ABI25387.1| competence protein E [Haemophilus somnus 129PT]
          Length = 377

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 111/274 (40%), Gaps = 18/274 (6%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------- 226
           +Q   ++ KK++  ++   E Q+ ++  I  +  + LK++G +  I   ++         
Sbjct: 103 DQETLNALKKLIKEMDQPIE-QIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGSL 161

Query: 227 --------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                   ++    +F       G        ++    +  L ALER   +  +A P L 
Sbjct: 162 AANGFQHLTEQLNVNFATAATPAGSIALQIAKINDRLLDLELTALERENNVEIIASPRLL 221

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
             + QSAS   G +  Y      +    V   +  + L  TP +     I L +    + 
Sbjct: 222 TTNKQSASIKQGTEIPYVITGKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNS 281

Query: 339 PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           P   +  G  +M S   ++ +T V    G TIVL G+  D I +  + +PLL  IPIL  
Sbjct: 282 PGSRITYGQNEMVSIDKQEINTQVFARDGETIVLGGVFHDTITKGVDKVPLLGDIPILKR 341

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           LF       ++ E+ I  TP +++     ++ +P
Sbjct: 342 LFSRESERHQKRELVIFVTPRIIRSEQPNEIIKP 375


>gi|291280100|ref|YP_003496935.1| hypothetical protein DEFDS_1724 [Deferribacter desulfuricans SSM1]
 gi|290754802|dbj|BAI81179.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 796

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 125/299 (41%), Gaps = 38/299 (12%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-------------QVTLKVT 201
            D+     + ++ LS  G+ +    S+  V+  +  A E              QVT++  
Sbjct: 503 ADASEFSSVIKSVLSPRGKMEINAKSNSFVITDIKSAIEQAKDLLEELDKRTPQVTIEAR 562

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSF------AADFGGKFVSEGG------------ 243
           I EV       +G Q     + +  S +F        + G   +   G            
Sbjct: 563 IVEVFDTNNVNLGIQWGGNYNVNSTSVNFPNTITVNGNTGSTGIGGAGYVVNLPVGAPAG 622

Query: 244 --DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
               S+  +   F+ +  L ALE    +RT++ P +T +  Q A   SGG  +      +
Sbjct: 623 ALALSLGNLSRTFNLDIALSALESQNKVRTISSPRITTLDNQEAEIKSGGTAIIVPTGDN 682

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
           T    V   D G+ L   P + S   I L I+ E S   +G    +  +   +KA T V 
Sbjct: 683 TETEEV---DVGIKLKIKPHITSNNMIYLDIEVEKS--SLGAVTANTATTEEKKAKTQVL 737

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L +G T V+ G+ +D+  ++ +G+P LSKIPILGALFR       + E+ +  TP +V+
Sbjct: 738 LANGETTVIGGIYEDEKSEVNQGVPFLSKIPILGALFRAKNNTVTKRELLVFITPKIVE 796


>gi|291279644|ref|YP_003496479.1| type IV pilus assembly protein PilQ [Deferribacter desulfuricans
           SSM1]
 gi|290754346|dbj|BAI80723.1| type IV pilus assembly protein PilQ [Deferribacter desulfuricans
           SSM1]
          Length = 406

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 114/252 (45%), Gaps = 16/252 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------SFAADFG 235
           K  ++ +++  + QV ++  I EV +   +++G Q S   + +  +K      S   D  
Sbjct: 157 KYYISKIDVPIK-QVMIEAKIVEVSKTGSRELGLQWSANTNINSTNKYFPNTISIGGDTS 215

Query: 236 G-----KFVSEGGDFSV--KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           G        + GG  S+        F  +  L ALE+    + +++P +  ++ + A   
Sbjct: 216 GYMVNLPITNPGGTLSLLLGNYSGSFILDAKLQALEQQGLAKIVSQPKIVTMNNKEAKIE 275

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           SG +  YK +      T V + +  + L  TP V     I L+I  + SE          
Sbjct: 276 SGFEFHYKVIDDDD--TDVESDEAKLSLTVTPQVTPDNNILLKIVVDKSELDFSKTVDGY 333

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P    RKA+T V+L  G T V+ GL+++        +P LSKIP++G LF++   + +  
Sbjct: 334 PLKFTRKAETYVKLKDGETTVIGGLVQEKQSNSTSAVPGLSKIPLIGWLFKSKTNSHDLN 393

Query: 409 EIFIAATPFLVK 420
           ++ I  TP ++K
Sbjct: 394 DLVIFITPKIIK 405


>gi|148997|gb|AAA25012.1| A mini-Tn10kan insertion in ORF E causes a deficiency in
           transformation. ORF E is 24% identical to the products
           of the filamentous phage gene IV and of pulD, a gene in
           the pulC operon of Klebsiella; ORF; putative
           [Haemophilus influenzae]
          Length = 441

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVK 420
            ++K
Sbjct: 426 HILK 429


>gi|324111701|gb|EGC05681.1| type IV pilus secretin PilQ [Escherichia fergusonii B253]
          Length = 412

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKS 229
           N+ A ++ +  ++ +++    QV L   I  +    L+++G + +          G   +
Sbjct: 160 NKTALAALEHWISEMDVPVG-QVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            ++D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LSSDLAVATATTQVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+  + G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  K+ IPLL  IP LG LF +     E 
Sbjct: 338 VLTIDKQEIETQVEVKSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|170717282|ref|YP_001784397.1| type IV pilus secretin PilQ [Haemophilus somnus 2336]
 gi|168825411|gb|ACA30782.1| type IV pilus secretin PilQ [Haemophilus somnus 2336]
          Length = 377

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 111/274 (40%), Gaps = 18/274 (6%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------- 226
           NQ   ++ KK++  ++   E Q+ ++  I  +  + LK++G +  I   ++         
Sbjct: 103 NQETLNALKKLIKEMDQPIE-QIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGNL 161

Query: 227 --------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                   ++    +F       G        ++    +  L ALER   +  +A P L 
Sbjct: 162 AANGFQHLTEQLNVNFATTATPAGSIALQIAKINDRLLDLELTALERENNVEIIASPRLL 221

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
             + QSAS   G +  Y      +    V   +  + L  TP +     I L +    + 
Sbjct: 222 TTNKQSASIKQGTEIPYVITGKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNS 281

Query: 339 PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           P   +  G  +M S   ++ +T V    G TIVL G+  D I +  + +PLL  IPIL  
Sbjct: 282 PGSRITYGQNEMVSIDKQEINTQVFAQDGETIVLGGVFHDTITKGVDKVPLLGDIPILKR 341

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           LF       ++ E+ I  TP +++     ++ +P
Sbjct: 342 LFSRESERHQKRELVIFVTPRIIRSEQPNEIIKP 375


>gi|148262762|ref|YP_001229468.1| general secretion pathway protein D [Geobacter uraniireducens Rf4]
 gi|146396262|gb|ABQ24895.1| general secretion pathway protein D [Geobacter uraniireducens Rf4]
          Length = 641

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 114/274 (41%), Gaps = 22/274 (8%)

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGE-----DQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
            ++  +    +S     NL+ +  +      QV ++  IAEV    LK +G Q  + G +
Sbjct: 325 DKATNSLVIMASPTDYQNLIQVIQKLDKRRRQVFVEAVIAEVSLSKLKDLGVQWGVLGGA 384

Query: 224 SGPSKSFAA-----DFGGKFVSEGGDFSVKGVL------DRFSFETVLHALERATAIRTL 272
           S  + + A      D     ++   +    G+          +F  VL AL+   A+  L
Sbjct: 385 SNGTATAAGLYDPQDTFTTLLTALANLKSAGITIPDLTGTALNFSAVLRALDSLGAVNVL 444

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTHDYGVVLHFTPTVLSPGR 327
           + PT+     + A    G    +K   + +  T+     +   D G+ L  TP +     
Sbjct: 445 STPTIMTSDNKEAEIFVGENVPFKGNVTISNTTTPSFQSIERKDTGITLKITPQISEGEY 504

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRV-RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           + L I  E+S       +G        R A T+V +    T+V+ GL++D  Q+    IP
Sbjct: 505 VKLDIYQEISAISNTTVSGASDLITTKRSAKTSVAVKDKDTMVIGGLIQDREQETVNKIP 564

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           LL  IP LG LF+     R++T + I  TP +V+
Sbjct: 565 LLGDIPFLGWLFKFKNTTRQKTNLLIVLTPRIVR 598


>gi|300718766|ref|YP_003743569.1| secretion and pilus transport protein [Erwinia billingiae Eb661]
 gi|299064602|emb|CAX61722.1| secretion and pilus transport protein [Erwinia billingiae Eb661]
          Length = 388

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 111/250 (44%), Gaps = 6/250 (2%)

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
           A  ++++ +  L++  E Q+ L   I  +  + L+++G +   T +         + F  
Sbjct: 139 ALDATRRWVQALDVPLE-QIELAAHIVTINEESLRELGVRWGTTSNEQITQALRTSQFTV 197

Query: 237 KFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                    +    L R      +  L ALE+   +  +A P L     Q AS   G + 
Sbjct: 198 SLPVADAALTAGFTLARLDGKLLDLELSALEQENKLEIIASPRLFTSHQQPASIKQGTEI 257

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SY 351
            Y+  S ++G T+V   +  + +  TP V + GRI L++Q   + P   + +G+    + 
Sbjct: 258 PYEVSSGTSGTTTVEFKEAVLGMEVTPVVQANGRILLKLQLTQNVPGRTMRSGEGEYLAI 317

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++  T V L  G T+ L G+ +      +  +PL+  IPILG+LFR     ++  E+ 
Sbjct: 318 DKQEIQTQVTLKDGQTLALGGIFQRSTASGQRKVPLIGDIPILGSLFRYDINEQKRRELV 377

Query: 412 IAATPFLVKP 421
           I  TP L++ 
Sbjct: 378 IFITPRLIRD 387


>gi|322831067|ref|YP_004211094.1| general secretion pathway protein D [Rahnella sp. Y9602]
 gi|321166268|gb|ADW71967.1| general secretion pathway protein D [Rahnella sp. Y9602]
          Length = 659

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/318 (21%), Positives = 119/318 (37%), Gaps = 33/318 (10%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              Q    S ++V+  L+I    QV ++  I EV+      +G Q S             
Sbjct: 321 TAQQDVMQSLEQVITKLDIR-RAQVLVEAIIVEVQDGNGLNLGIQWSNNQVGGTQFTGTG 379

Query: 232 ADFGGKFVSE---------GGDFSVKGVLDRFS----------FETVLHALERATAIRTL 272
           A                    D  +   L  F+          +  +L AL  +     L
Sbjct: 380 APISTVAAGVRQYKKEGIISSDNPLSSTLQTFNGMTAGFFSGDWNVLLTALSTSNKNDIL 439

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G +       +T S     +SV     G  L  TP +     +
Sbjct: 440 ATPSIVTLDNKEASFNVGQEVPSLSGSQTTSGDNIYSSVVYKTVGTKLKVTPQINEGDSV 499

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            + I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++ K  +PLL
Sbjct: 500 LMEIEQEVSSVDTSTNSSLGPTFNTRTISNAVLVRTGETVVLGGLLDDSTKETKSKVPLL 559

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP +G LFR +     +  + +   P +++          D+ YS   + K   F ++
Sbjct: 560 GDIPWIGNLFRYTSTESAKRNLMVFIRPTIIRD---------DEVYSSISNKKYSHFQKI 610

Query: 449 NKIYGPKEASEVEGQNYK 466
            K    ++  ++   N +
Sbjct: 611 QKTRQDEDHQDLLTPNTR 628


>gi|52426025|ref|YP_089162.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308077|gb|AAU38577.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 478

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 81/461 (17%), Positives = 174/461 (37%), Gaps = 43/461 (9%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ---------- 61
           +   +F S+    +     E   ++       +   +++++  N  +++           
Sbjct: 30  LFFGIFISSAFAGESGTFAERQFSIHLKKAPLVATLQQLALEQNANLVIDDELEGTLSLK 89

Query: 62  -VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI---LIGHDGKQMLNLDILIE 117
              V+++ +  S     ++ +H  + +Y F KN    N+I    I  + K   N   L E
Sbjct: 90  LEKVNLERLFHSVAKLKNLSLHKDKDIYYFTKN----NLIEPSSIAGELKNTENFTALSE 145

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            ++    + L    A   ++        +L   V ++   +R+ +L      +S +N   
Sbjct: 146 PNLVSTTVKLHFAKASEVMKSLTSGTGSLLS-PVGSVSFDERSNQLLIQDERRSLQNI-- 202

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------TGS 222
               K ++  L+   E Q+ ++  I  +  + LK++G +  +                  
Sbjct: 203 ----KNIIAQLDKPIE-QIAIEARIVTMNDESLKELGVRWGLLEGVNSAHRIAGSLEANG 257

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +   ++   +F       G        +     +  L ALE+   ++ +A P L   + 
Sbjct: 258 FADIGQNLNVNFPTSATPAGSVALQVAKIHGRLLDLELTALEQENNVKIIASPRLLTTNK 317

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           +SAS   G +  Y  V+       V   +  + L  TP +     I L +    + P   
Sbjct: 318 KSASIKQGTEIPYVAVNRKNDTEHVEFREAVLGLEVTPHISKDNSILLDLIVSQNSPGAN 377

Query: 343 V--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ S   ++ +T V    G TIVL G+  D I + ++ +P+L  IP++  LF  
Sbjct: 378 IVYGNGNLISIDKQEINTQVFAKDGETIVLGGVFNDTITKSEDKVPILGDIPLIKHLFSK 437

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
                ++ E+ I  TP ++K     +  +    Y+ +   K
Sbjct: 438 ESEKHQKRELVIFVTPHILKQGESLEQIQKRFKYAPKSPEK 478


>gi|255020086|ref|ZP_05292157.1| type II and III secretion system protein [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970448|gb|EET27939.1| type II and III secretion system protein [Acidithiobacillus caldus
           ATCC 51756]
          Length = 502

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 174/454 (38%), Gaps = 63/454 (13%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           A+      +  + + I +   +V ++     V+ V + D       V     + L G   
Sbjct: 13  AIAMAIPAQAAEDRTIDLYAGQVRVIPTK-PVKRVAIGDGKVLSTTVVDGNELLLLGDAE 71

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN----IRVEMVSDTVVLHGM 150
           G+ ++ +   DG +     ++  +++      +R  +        IRV      V    +
Sbjct: 72  GETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNL 131

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
             T     RA+        Q+   +    ++    ++     E  V L V I E+R+ +L
Sbjct: 132 APTTLARVRAL--------QALYPKTIVLATPSPFDM-----EKMVWLDVNILEIRKSVL 178

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGG----KFVSEGGDF-----------------SVKG 249
           +  G   S      GP  +F  DF G      V  G D                  S+ G
Sbjct: 179 ENFGVDWS--KQIPGPFAAFGKDFVGPRNVATVPLGQDLTQPPVAGTGVRVTPPLGSLNG 236

Query: 250 VLDRFSFE----------------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            +D  +                  + ++          +A P L+A SG    F +GGQ 
Sbjct: 237 AIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQV 296

Query: 294 LYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGD 347
                 ++  A   +VT  DYG+ L F P V     + +R+  +VS+      + +N   
Sbjct: 297 PILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFT 356

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P +  R+++  + +  G T+V++GL+     +    +P L  IPILG LF+++ F    
Sbjct: 357 VPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGN 416

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           T++ I  TP +V   ++ ++ +      ++D+ +
Sbjct: 417 TDLVILVTPRVVSAASLENIRQVSQAVEMKDEYR 450


>gi|330958220|gb|EGH58480.1| general secretion pathway protein D [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 773

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 123/306 (40%), Gaps = 21/306 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
           +G          A + S   L ++   Q+     +  +  L+     QV ++  I EV+ 
Sbjct: 458 NGKSLDASTRITAQKSSNQLLVRTRPAQW--KEIESAIKRLDNP-PLQVQIETRILEVKL 514

Query: 208 DILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFETV 259
                +G Q  +     +SG + +     G +     G  ++      F      + +  
Sbjct: 515 TGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSIGTGGAALAATDSFFYSFVSNNLQVA 574

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGV 314
           L ALE     + L+ P+L  ++ Q A    G        + +T A+     SV     GV
Sbjct: 575 LRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTTVNTNASATTLSSVEYVQTGV 634

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLA 371
           +L   P +   G + + IQ +VS+     N+ D+   P    R   T V   SG T++L 
Sbjct: 635 ILDVVPRINPGGLVYMDIQQQVSDADNSANSTDLNGNPRISTRSVSTQVAAQSGQTVLLG 694

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K D  +    +P L +IP L  LF N+  +++ TE+ +  TP ++   +     +  
Sbjct: 695 GLIKQDNAESVSAVPYLGRIPGLKWLFGNTSKSKDRTELIVLITPRVI--TSSSQARQVT 752

Query: 432 DHYSVE 437
           D Y  +
Sbjct: 753 DDYRQQ 758


>gi|253690245|ref|YP_003019435.1| type IV pilus secretin PilQ [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756823|gb|ACT14899.1| type IV pilus secretin PilQ [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 424

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 6/231 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +  + L+++G    +   S+  +     +F      +    +    L R 
Sbjct: 190 QVQLAAHIVTISSEHLQELGVNWGLGEGSAANNALRLNNFNVGLPVDTPAINAGFHLARL 249

Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    +  L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +
Sbjct: 250 NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 309

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTI 368
             + +  TP +L  GRI L ++   + P   +  GD     +   ++  T V +  G TI
Sbjct: 310 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 369

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +     +P+L ++P+ G LFRN        E+ I  TP L+
Sbjct: 370 VLGGIFQQQKKSSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420


>gi|229577502|ref|YP_001178510.2| outer membrane porin HofQ [Enterobacter sp. 638]
          Length = 413

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L+  I  +    L+++G + ++  +      G   +  AD      +    F++ G 
Sbjct: 181 QVQLEAHIVTINEKSLRELGVKWNLAEAQGAGAPGQVTTMGADLSVANATTHVGFNI-GR 239

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +D    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 240 IDGRLLDLELSALEQKQQLEIIASPRLLASHMQPASIKQGSEIPYQVSSGDSGATSVEFK 299

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP VL  GR+ L+++   + P  V+    G+  +   ++ +T VE+ SG T+
Sbjct: 300 EAVLGMEVTPVVLPNGRVRLKLRISENMPGQVLQQADGETLAIDKQEIETQVEVKSGETL 359

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L G+     +   + +P L  +P+LG  FR+   + E  E+ +  TP L+ 
Sbjct: 360 ALGGIFSQKNKTASDSVPGLGHVPLLGQFFRHDGKDNERRELVVFITPRLID 411


>gi|145320312|gb|ABP62459.1| type IV pilus secretin PilQ [Enterobacter sp. 638]
          Length = 373

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L+  I  +    L+++G + ++  +      G   +  AD      +    F++ G 
Sbjct: 141 QVQLEAHIVTINEKSLRELGVKWNLAEAQGAGAPGQVTTMGADLSVANATTHVGFNI-GR 199

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +D    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 200 IDGRLLDLELSALEQKQQLEIIASPRLLASHMQPASIKQGSEIPYQVSSGDSGATSVEFK 259

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP VL  GR+ L+++   + P  V+    G+  +   ++ +T VE+ SG T+
Sbjct: 260 EAVLGMEVTPVVLPNGRVRLKLRISENMPGQVLQQADGETLAIDKQEIETQVEVKSGETL 319

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L G+     +   + +P L  +P+LG  FR+   + E  E+ +  TP L+ 
Sbjct: 320 ALGGIFSQKNKTASDSVPGLGHVPLLGQFFRHDGKDNERRELVVFITPRLID 371


>gi|148827632|ref|YP_001292385.1| competence protein E [Haemophilus influenzae PittGG]
 gi|148718874|gb|ABR00002.1| competence protein E [Haemophilus influenzae PittGG]
          Length = 445

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKGGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVK 420
            ++K
Sbjct: 426 HILK 429


>gi|121999148|ref|YP_001003935.1| general secretion pathway protein D [Halorhodospira halophila SL1]
 gi|121590553|gb|ABM63133.1| general secretion pathway protein D [Halorhodospira halophila SL1]
          Length = 670

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 74/395 (18%), Positives = 134/395 (33%), Gaps = 49/395 (12%)

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV-----EMVSDTVV--LHGMVRTIQ 155
                 ++  D      +  L   L   + D             ++++V  L GM   + 
Sbjct: 248 DRSNSVLVGGDPARRPSVMELIQRLDAELEDEEGAAVIYLRYSDAESIVPILEGMAEGMA 307

Query: 156 DSQRAVELSETFLSQSGRNQYANSSS------KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
                         ++      N         + V+N L++    QV ++  IAEV  + 
Sbjct: 308 RGPEGETGVSIHDHEATNALIINGPPDLVAKLRGVVNRLDVR-RAQVLVEAIIAEVSAER 366

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKF----------------VSEGGDFSVKGVLDR 253
            +++G Q    G       +F A  GG                  +S G   +       
Sbjct: 367 SQELGIQWGALGDQGVGLVNFDAAGGGSVTNIGRAAAGGTDALGNLSLGSGLTAGAATRG 426

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---VSSSTGATSVTTH 310
                +L AL   +    L+ P++  +  + A    G    + T   V  +    S+   
Sbjct: 427 GELGVLLRALSSESDSNILSTPSVMTMDNEEAEIVVGQNVPFVTGREVGDTRDFQSIQRE 486

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           D GV L   P +     + L I+ EVS+      A D+ +  +R   T+  +  G  +VL
Sbjct: 487 DVGVQLRIRPQINEGDSLKLDIEKEVSDVQERGEAEDIVT-SMRSITTSAMVDDGEIMVL 545

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            GL+ +  +   + +P L  IP LG LFR      ++  + +   P +++          
Sbjct: 546 GGLMDEQAESQTDRVPGLGSIPGLGWLFRYESSAAQKQNLMVFLRPRIIEN--------- 596

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
                  DDA+     + N I   + AS   G  +
Sbjct: 597 ------RDDARELTSPKYNLIRNRQLASRARGMRF 625


>gi|194431292|ref|ZP_03063585.1| protein transporter HofQ [Shigella dysenteriae 1012]
 gi|194420747|gb|EDX36823.1| protein transporter HofQ [Shigella dysenteriae 1012]
          Length = 412

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+VL G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLVLGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|307555474|gb|ADN48249.1| protein transport protein HofQ precursor [Escherichia coli ABU
           83972]
          Length = 377

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 125 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 183

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 184 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 242

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 243 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 302

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 303 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 362

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 363 RELVVFITPRLV 374


>gi|330807111|ref|YP_004351573.1| Type IV fimbriae biogenesis protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375219|gb|AEA66569.1| Type IV fimbriae biogenesis protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 696

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 132/332 (39%), Gaps = 35/332 (10%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            D+A L   L +      +     +D   L   V + +   +A E     + +   N  A
Sbjct: 371 ADLAPLRRELLQ------VNYAKATDIAKLFQSVTSAEA--KADERGTITVDERTNNIIA 422

Query: 178 NSSS------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             +       ++++  L+I    QV ++  I E   D  K +G +   +  + G   S  
Sbjct: 423 YQTQDRLDELRRIVAQLDIP-VRQVMIEARIVEANVDYDKSLGVRWGGSVQNKGNWSSSG 481

Query: 232 ADFGGK--------------FVSEGGDFSVKGV-----LDRFSFETVLHALERATAIRTL 272
              G                FV  G   +  G+      D    +  L A+E+      +
Sbjct: 482 VTTGDSTTVGTPGSTSTNQPFVDLGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIV 541

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           ++P +     ++A    G +  Y+  SSS GATSV+  +  + L  TP +    RI + +
Sbjct: 542 SQPKVVTSDKETAKILKGTEIPYQEASSS-GATSVSFKEASLSLEVTPQITPDNRIIMEV 600

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           +    EP       D+P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P
Sbjct: 601 KVTKDEPDYLNKVNDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFLGDVP 660

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
            LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 661 YLGRLFRRDVVSDSKSELLVFLTPRIMNNQAI 692


>gi|323179085|gb|EFZ64659.1| transport protein hofQ [Escherichia coli 1180]
          Length = 377

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 125 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 183

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 184 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 242

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 243 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 302

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 303 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 362

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 363 RELVVFITPRLV 374


>gi|271502312|ref|YP_003335338.1| type IV pilus secretin PilQ [Dickeya dadantii Ech586]
 gi|270345867|gb|ACZ78632.1| type IV pilus secretin PilQ [Dickeya dadantii Ech586]
          Length = 433

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 6/232 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
           QV L   I  +  + LK +G    +  +S         +F      E    +       L
Sbjct: 194 QVQLAAHIVTISSEHLKALGVNWGLGEASIAGQAMQMNNFTVNLPVESPAINAGFHLAKL 253

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    +  L ALE+   +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +
Sbjct: 254 NGRLLDLELMALEQENEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 313

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368
             + +  TP +L  G+I L +    + P   +     G++ +   ++  T V +  G TI
Sbjct: 314 AVLGMEVTPRILHGGQITLNLLISQNMPGRAIKQGEGGEILAIDKQEIQTQVTVQDGETI 373

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           VL G+ +    Q +  +P L  +P +G LFR +       E+ I  TP L++
Sbjct: 374 VLGGIFQQQKNQGERQVPGLGALPGIGRLFRATSQQHTRRELVIFITPTLIQ 425


>gi|330720479|gb|EGG98780.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC2047]
          Length = 332

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 105/242 (43%), Gaps = 17/242 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS------------KSFAADFGGKFVSE 241
            QV ++  I   R    KQ+G +   T    G S               A D G    + 
Sbjct: 93  RQVQVEARIVIARDTFDKQLGIRWGFTAQGGGSSDRTLTTGGGGLAGDVAVDLGVSGATS 152

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                +  V    + +  L ALE       +++P L    GQ+A   SG +  Y+  SSS
Sbjct: 153 A--LQLGFVHGNDTLDLTLSALESDGVSEVVSQPKLITADGQTARIESGVEIPYQEASSS 210

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            GATSV+  D  + L  TP +    RI + ++  V++  +G     +PS   R+  T V 
Sbjct: 211 -GATSVSFKDAVLALEVTPQITPDDRIIMDLK--VNKDSVGEIFLGIPSVDTREIQTQVL 267

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + +G T+VL G+ + +  +     P L  IP+LG LF+      ++TE+ I  TP L+K 
Sbjct: 268 VENGETVVLGGVYERETIENISKTPFLGDIPVLGELFKRKTKEDDKTELLIFITPKLIKD 327

Query: 422 VA 423
             
Sbjct: 328 TV 329


>gi|308271298|emb|CBX27906.1| hypothetical protein N47_G32300 [uncultured Desulfobacterium sp.]
          Length = 695

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 122/305 (40%), Gaps = 20/305 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------GEDQVTLKVT 201
            G   + Q  Q ++       +   +N     +S  V   L            QV ++ T
Sbjct: 391 TGTNTSSQTRQISLPSGLKIAADDTKNIIMIMASPSVYRDLLTLLRTLDKPAKQVLIEAT 450

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           IAE+      Q G +  I  +  G + +          + G  F+   + +    + ++ 
Sbjct: 451 IAELTLSDDLQYGLEWYINNTLQGGAYTLGTSGNLGLSASGLAFNF--ISESKKVKGLIS 508

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDY 312
           A   A     L+ P L  I  + A+   G      T   ++            SV   + 
Sbjct: 509 AFAIAGKTNILSTPRLMVIDNKEATIQVGEDVPTVTSQVTSTESTITSTNLLQSVQYRNT 568

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           GV+L   PT+ + G + L +  EVSE      AG  P   +RK +TTV +  G T++L G
Sbjct: 569 GVILRVKPTINTEGLLTLELSQEVSETGEKGVAGS-PVILMRKINTTVVIAQGQTLLLGG 627

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L+K+     +  +P L  IPI+G LF+ +   + +TE+ I  TP ++  V   D +R   
Sbjct: 628 LMKEKNTTGESKVPGLGDIPIIGNLFKATSKTKNKTELIILVTPTIISNVD--DATRVTA 685

Query: 433 HYSVE 437
            +  E
Sbjct: 686 EFRKE 690


>gi|293412807|ref|ZP_06655475.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291468454|gb|EFF10947.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 412

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|148556416|ref|YP_001263998.1| type II and III secretion system protein [Sphingomonas wittichii
           RW1]
 gi|148501606|gb|ABQ69860.1| type II and III secretion system protein [Sphingomonas wittichii
           RW1]
          Length = 431

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 104/420 (24%), Positives = 158/420 (37%), Gaps = 45/420 (10%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
           L     A  A+I  +     +   +S+ L    +L  P  +  + V       V   S R
Sbjct: 5   LSTALVAAVALIGPAAATAAED-SLSLQLRVKRVLDYPKPIARIQVDREGVIAVRAPSRR 63

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
           ++ +     G A + +   DG  +    I +                 +   V    D  
Sbjct: 64  SLGVTAIGTGLATLSVFAADGSLIGRTAISVG------------LPGGATGDVRADEDDG 111

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L G V  +                       +S+ +   N L++ GE  V + V  A V
Sbjct: 112 SLSGTVDGLAARAALQR---------------SSADRGAANSLSVNGEQVVAVDVQFAAV 156

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-----------DFSVKGVLDRF 254
               L+ +GF  S        +    A  G    +  G            F++       
Sbjct: 157 SSSTLRALGFNFSKLSGDLQGAIVSPATLGNFSSTSTGLTLDTTAPLQNAFNLFLSAPNR 216

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--TTHDY 312
               VL AL      + LA+PTL   SG+ ASF +GG+       ++     +     ++
Sbjct: 217 GITAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEVPIPVPQNNGNGNGIGIEYKEF 276

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTI 368
           GV L  TP VLS  RI L+I  EVSE        +    +P  R R  +TTV+L SG + 
Sbjct: 277 GVRLKVTPFVLSKDRIVLKIAPEVSELDYTNGVRLQGYVVPGLRRRSTETTVQLGSGQSF 336

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           V+AGL   +    KE  P L  +P+LGALF+  +  RE  E+ I ATP LV P+    + 
Sbjct: 337 VIAGLTYSNSVVSKEKTPFLGDLPVLGALFKRQQNQRESQELIIVATPRLVGPMDPSRIP 396


>gi|170766950|ref|ZP_02901403.1| protein transporter HofQ [Escherichia albertii TW07627]
 gi|170124388|gb|EDS93319.1| protein transporter HofQ [Escherichia albertii TW07627]
          Length = 386

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G + ++  +    S G   +  +D      +    F++ G 
Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQHVGSVGQVTTLGSDLSVATATTHIGFNI-GR 212

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 213 INGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 272

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+ SG T+
Sbjct: 273 EAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETL 332

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 333 ALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|194365988|ref|YP_002028598.1| general secretion pathway protein D [Stenotrophomonas maltophilia
           R551-3]
 gi|194348792|gb|ACF51915.1| general secretion pathway protein D [Stenotrophomonas maltophilia
           R551-3]
          Length = 793

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 128/314 (40%), Gaps = 32/314 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++V++ L+     QV ++  I EV +    ++G Q  +    +     F    GG  ++ 
Sbjct: 380 RRVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTNGGSGLNT 438

Query: 242 G-------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                               G  ++ GV    + + + +AL+       L+ P L  +  
Sbjct: 439 AARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSKGGANILSTPNLMTLDN 498

Query: 283 QSASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           ++AS   G    + +          S+    ++   D G+ L   P +   G + L I  
Sbjct: 499 EAASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQ 558

Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           EVS       N+        R  DT+V L  G  +VL GLL+D +   ++ +P L KIP+
Sbjct: 559 EVSSIDAQSANSTVGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPV 618

Query: 394 LGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           LGALFR+    R +T + +   P +V+ P A + L+R  D Y    +A+A      +   
Sbjct: 619 LGALFRSDTRKRAKTNLMVFLRPHVVRDPAAGQRLTR--DRYDYMRNAQAGTQPVQSWAL 676

Query: 453 GPKEASEVEGQNYK 466
               A ++  Q+  
Sbjct: 677 PALSAPQLPPQDLS 690


>gi|323174021|gb|EFZ59649.1| transport protein hofQ [Escherichia coli LT-68]
          Length = 386

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|307545360|ref|YP_003897839.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
 gi|307217384|emb|CBV42654.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
          Length = 749

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 71/284 (25%), Positives = 122/284 (42%), Gaps = 17/284 (5%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH- 217
            A E S   L ++   Q+     +  +  L+     QV ++  I EVR       G Q  
Sbjct: 449 TAQESSNQLLVRARPAQW--KEIESAIERLDQP-PRQVQIETRILEVRLTGALNQGVQWY 505

Query: 218 --SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---SFETVLHALERATAIRTL 272
              + G++S PS + A+   G   + G       +   F   + +  L AL+     + L
Sbjct: 506 LGQLAGNASNPSVANASGSQGALGAGGVSLGGSSMFYSFVGDNLQVALRALQTRGLTQVL 565

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGR 327
           + P+L  ++ Q A    G        + +T       +SV     GV+L   P +   G 
Sbjct: 566 SAPSLVVLNNQQAQIQVGDNIPVNQTTVNTADADTTLSSVEYVQTGVILDVVPRINPGGL 625

Query: 328 IGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           + + IQ +VS+       +    P    R   T V + SG T++L GL++ +  + +  +
Sbjct: 626 VYMDIQQQVSDADDNAAGSTASNPRISTRAVSTQVAVQSGQTVLLGGLIQQNNAESETRV 685

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLS 428
           P LS IP LG LF +   +R+ TE+ +  TP +V  PV  R+++
Sbjct: 686 PGLSSIPGLGRLFGSEARDRDRTELIVLITPKVVNNPVQAREIT 729


>gi|300313469|ref|YP_003777561.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076254|gb|ADJ65653.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum
           seropedicae SmR1]
          Length = 674

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 115/273 (42%), Gaps = 31/273 (11%)

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKSFA 231
            A ++ +K++  ++IA   QV ++  I E      + +G +  +     G++ G S +  
Sbjct: 402 AALANVRKLIERIDIA-ARQVMIEARIVEADDSFARNLGVKLGLAARTQGAALGNSYASV 460

Query: 232 ADFGGKFVSEGGD-----------------------FSVKGVLDRFSFETVLHALERATA 268
            +  G+     G                        F++     +      L ALE    
Sbjct: 461 GELSGQTPPAAGTYLREPALGLGAGALAGSAPGSFAFTLFNAAAQRFLNVELSALEAEGR 520

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + ++ P L     Q+A    G +  Y+  S  +GAT+       + L  TP +   G +
Sbjct: 521 GKIVSSPRLVTADQQAALIEQGEEIPYQQ-SIGSGATATAFKKANLKLEVTPQITPDGNV 579

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L +  +V++   G       +   +   T V++  GGT+V+ G+      + +  +PLL
Sbjct: 580 ILDV--DVNKDSRGSATPGGLAINTKHIKTKVQVEDGGTVVIGGIYTQTDNEHETRVPLL 637

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            +IP+LGALFR+    R++TE+ I  TP +V P
Sbjct: 638 GEIPLLGALFRSRNKVRDKTELLIFLTPRIVAP 670


>gi|293416792|ref|ZP_06659429.1| transporter HofQ [Escherichia coli B185]
 gi|291431368|gb|EFF04353.1| transporter HofQ [Escherichia coli B185]
          Length = 412

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ +K +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEKWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|15803894|ref|NP_289930.1| outer membrane porin HofQ [Escherichia coli O157:H7 EDL933]
 gi|15833487|ref|NP_312260.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. Sakai]
 gi|168747135|ref|ZP_02772157.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113]
 gi|168753140|ref|ZP_02778147.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401]
 gi|168759412|ref|ZP_02784419.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501]
 gi|168765735|ref|ZP_02790742.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486]
 gi|168772721|ref|ZP_02797728.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196]
 gi|168779471|ref|ZP_02804478.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076]
 gi|168785192|ref|ZP_02810199.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC869]
 gi|168797158|ref|ZP_02822165.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC508]
 gi|208807105|ref|ZP_03249442.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206]
 gi|208814350|ref|ZP_03255679.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045]
 gi|208821093|ref|ZP_03261413.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042]
 gi|209400800|ref|YP_002272825.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115]
 gi|217324393|ref|ZP_03440477.1| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588]
 gi|254795305|ref|YP_003080142.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. TW14359]
 gi|261224673|ref|ZP_05938954.1| predicted fimbrial transporter [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254432|ref|ZP_05946965.1| predicted fimbrial transporter [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284727|ref|YP_003501545.1| putative fimbrial transporter [Escherichia coli O55:H7 str. CB9615]
 gi|12518014|gb|AAG58491.1|AE005561_4 putative transport portein [Escherichia coli O157:H7 str. EDL933]
 gi|13363707|dbj|BAB37656.1| putative transport portein [Escherichia coli O157:H7 str. Sakai]
 gi|187771720|gb|EDU35564.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196]
 gi|188018292|gb|EDU56414.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113]
 gi|189002616|gb|EDU71602.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076]
 gi|189359008|gb|EDU77427.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401]
 gi|189364497|gb|EDU82916.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486]
 gi|189369829|gb|EDU88245.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501]
 gi|189374266|gb|EDU92682.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC869]
 gi|189380180|gb|EDU98596.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC508]
 gi|208726906|gb|EDZ76507.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206]
 gi|208735627|gb|EDZ84314.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045]
 gi|208741216|gb|EDZ88898.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042]
 gi|209162200|gb|ACI39633.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115]
 gi|209756640|gb|ACI76632.1| putative transport protein [Escherichia coli]
 gi|209756642|gb|ACI76633.1| putative transport protein [Escherichia coli]
 gi|209756644|gb|ACI76634.1| putative transport protein [Escherichia coli]
 gi|209756646|gb|ACI76635.1| putative transport protein [Escherichia coli]
 gi|217320614|gb|EEC29038.1| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588]
 gi|254594705|gb|ACT74066.1| predicted fimbrial transporter [Escherichia coli O157:H7 str.
           TW14359]
 gi|290764600|gb|ADD58561.1| predicted fimbrial transporter [Escherichia coli O55:H7 str.
           CB9615]
 gi|320639673|gb|EFX09267.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. G5101]
 gi|320655674|gb|EFX23597.1| outer membrane porin HofQ [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661459|gb|EFX28874.1| outer membrane porin HofQ [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666481|gb|EFX33464.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. LSU-61]
          Length = 412

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|26249985|ref|NP_756025.1| outer membrane porin HofQ [Escherichia coli CFT073]
 gi|227883521|ref|ZP_04001326.1| competence protein E [Escherichia coli 83972]
 gi|26110414|gb|AAN82599.1|AE016768_17 Protein transport protein hofQ precursor [Escherichia coli CFT073]
 gi|227839400|gb|EEJ49866.1| competence protein E [Escherichia coli 83972]
          Length = 412

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|152978367|ref|YP_001343996.1| type IV pilus secretin PilQ [Actinobacillus succinogenes 130Z]
 gi|150840090|gb|ABR74061.1| type IV pilus secretin PilQ [Actinobacillus succinogenes 130Z]
          Length = 482

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 114/280 (40%), Gaps = 19/280 (6%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------- 226
           N+ +  + KK++  L+   E Q+ ++  I  +  + LK++G +  +   ++G        
Sbjct: 176 NRQSIRNIKKLIAELDKPIE-QIAIEARIVTMNDESLKELGVRWGMFEPTAGAHKVSGSL 234

Query: 227 --------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                   S +   +F    +  G        ++    +  L ALE+   +  +A P L 
Sbjct: 235 AANGFTDISNNLNVNFATATMPAGSVALQVAKINGRLLDLELTALEQEKNVEIIASPRLL 294

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
             + ++AS   G +  Y   +      SV   +  + L  TP +     I + +    + 
Sbjct: 295 TTNKKAASIKQGTEIPYVVTNGKNDTQSVEFREAVLGLEVTPHISQNNAILMDLTVSQNS 354

Query: 339 PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           P   V+ G+   + S   ++  T V    G TIVL G+  D + +    +P+L  IP++ 
Sbjct: 355 PGNRVSYGENSEVVSIDKQEIKTQVFAKDGETIVLGGVFHDTVTKGSNKVPVLGDIPVIK 414

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
            LF N    R++ E+ I  TP ++K     +  R  D   
Sbjct: 415 HLFGNHSERRQKRELVIFVTPRILKNGETLEQLRHKDGLQ 454


>gi|193061725|ref|ZP_03042822.1| protein transporter HofQ [Escherichia coli E22]
 gi|193068780|ref|ZP_03049740.1| protein transporter HofQ [Escherichia coli E110019]
 gi|194427057|ref|ZP_03059609.1| protein transporter HofQ [Escherichia coli B171]
 gi|194435813|ref|ZP_03067916.1| protein transporter HofQ [Escherichia coli 101-1]
 gi|253771782|ref|YP_003034613.1| outer membrane porin HofQ [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254163319|ref|YP_003046427.1| outer membrane porin HofQ [Escherichia coli B str. REL606]
 gi|256020735|ref|ZP_05434600.1| outer membrane porin HofQ [Shigella sp. D9]
 gi|260846175|ref|YP_003223953.1| putative fimbrial transporter HofQ [Escherichia coli O103:H2 str.
           12009]
 gi|260857498|ref|YP_003231389.1| putative fimbrial transporter HofQ [Escherichia coli O26:H11 str.
           11368]
 gi|260870117|ref|YP_003236519.1| putative fimbrial transporter HofQ [Escherichia coli O111:H- str.
           11128]
 gi|332281935|ref|ZP_08394348.1| outer membrane porin HofQ [Shigella sp. D9]
 gi|192932515|gb|EDV85112.1| protein transporter HofQ [Escherichia coli E22]
 gi|192957856|gb|EDV88299.1| protein transporter HofQ [Escherichia coli E110019]
 gi|194415018|gb|EDX31288.1| protein transporter HofQ [Escherichia coli B171]
 gi|194425356|gb|EDX41340.1| protein transporter HofQ [Escherichia coli 101-1]
 gi|242378917|emb|CAQ33712.1| protein involved in utilization of DNA as a carbon source
           [Escherichia coli BL21(DE3)]
 gi|253322826|gb|ACT27428.1| type IV pilus secretin PilQ [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975220|gb|ACT40891.1| predicted fimbrial transporter [Escherichia coli B str. REL606]
 gi|253979376|gb|ACT45046.1| predicted fimbrial transporter [Escherichia coli BL21(DE3)]
 gi|257756147|dbj|BAI27649.1| predicted fimbrial transporter HofQ [Escherichia coli O26:H11 str.
           11368]
 gi|257761322|dbj|BAI32819.1| predicted fimbrial transporter HofQ [Escherichia coli O103:H2 str.
           12009]
 gi|257766473|dbj|BAI37968.1| predicted fimbrial transporter HofQ [Escherichia coli O111:H- str.
           11128]
 gi|323376744|gb|ADX49012.1| type IV pilus secretin PilQ [Escherichia coli KO11]
 gi|323959609|gb|EGB55261.1| type IV pilus secretin PilQ [Escherichia coli H489]
 gi|323969989|gb|EGB65264.1| type IV pilus secretin PilQ [Escherichia coli TA007]
 gi|332104287|gb|EGJ07633.1| outer membrane porin HofQ [Shigella sp. D9]
          Length = 412

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|209920843|ref|YP_002294927.1| outer membrane porin HofQ [Escherichia coli SE11]
 gi|218697071|ref|YP_002404738.1| outer membrane porin HofQ [Escherichia coli 55989]
 gi|331670209|ref|ZP_08371048.1| protein transport protein HofQ [Escherichia coli TA271]
 gi|331679451|ref|ZP_08380121.1| protein transport protein HofQ [Escherichia coli H591]
 gi|209914102|dbj|BAG79176.1| putative transport protein [Escherichia coli SE11]
 gi|218353803|emb|CAV00141.1| fimbrial transporter [Escherichia coli 55989]
 gi|323944387|gb|EGB40462.1| type IV pilus secretin PilQ [Escherichia coli H120]
 gi|324116416|gb|EGC10335.1| type IV pilus secretin PilQ [Escherichia coli E1167]
 gi|331062271|gb|EGI34191.1| protein transport protein HofQ [Escherichia coli TA271]
 gi|331072623|gb|EGI43948.1| protein transport protein HofQ [Escherichia coli H591]
          Length = 412

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|332085619|gb|EGI90783.1| transport protein hofQ [Shigella dysenteriae 155-74]
          Length = 386

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+VL G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLVLGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|312961914|ref|ZP_07776411.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
 gi|311283724|gb|EFQ62308.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
          Length = 740

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 107/261 (40%), Gaps = 18/261 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++  I EV+      +G Q  +   +   + +  A+  G   + G   +  G  D
Sbjct: 473 PLQVQIETRILEVKLTGELDLGVQWYLGRLAGNSTSTTVANASGSQGALGRGGAGLGAAD 532

Query: 253 RF-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
                    + +  LHALE     + L+ P+L  ++ Q A    G        + +TG +
Sbjct: 533 SLFYSFVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTS 592

Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKA 356
                SV     GV+L   P +   G + + IQ +VS+     +        P    R  
Sbjct: 593 DTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASTNGDTPANPRISTRSV 652

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V + SG T++L GL+K D       +P L KIP L  LF ++  +++ TE+ +  TP
Sbjct: 653 STQVAVQSGQTVLLGGLIKQDNADTVSAVPYLGKIPGLRWLFGSTSKSKDRTELIVLITP 712

Query: 417 FLVKPVAMRDLSRPDDHYSVE 437
            ++   +     +  D Y  +
Sbjct: 713 RVI--TSSSQARQVTDDYRQQ 731


>gi|331685028|ref|ZP_08385614.1| protein transport protein HofQ [Escherichia coli H299]
 gi|331077399|gb|EGI48611.1| protein transport protein HofQ [Escherichia coli H299]
          Length = 412

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTA 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|110643624|ref|YP_671354.1| outer membrane porin HofQ [Escherichia coli 536]
 gi|191171563|ref|ZP_03033111.1| protein transporter HofQ [Escherichia coli F11]
 gi|215488672|ref|YP_002331103.1| outer membrane porin HofQ [Escherichia coli O127:H6 str. E2348/69]
 gi|331649187|ref|ZP_08350273.1| protein transport protein HofQ [Escherichia coli M605]
 gi|110345216|gb|ABG71453.1| protein transport protein HofQ precursor [Escherichia coli 536]
 gi|190908190|gb|EDV67781.1| protein transporter HofQ [Escherichia coli F11]
 gi|215266744|emb|CAS11183.1| predicted fimbrial transporter [Escherichia coli O127:H6 str.
           E2348/69]
 gi|281180422|dbj|BAI56752.1| putative transport protein [Escherichia coli SE15]
 gi|331041685|gb|EGI13829.1| protein transport protein HofQ [Escherichia coli M605]
          Length = 412

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|309785870|ref|ZP_07680501.1| transport protein hofQ [Shigella dysenteriae 1617]
 gi|308926990|gb|EFP72466.1| transport protein hofQ [Shigella dysenteriae 1617]
          Length = 267

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 15  NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 73

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 74  LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 132

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 133 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 192

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 193 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 252

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 253 RELVVFITPRLV 264


>gi|218706981|ref|YP_002414500.1| outer membrane porin HofQ [Escherichia coli UMN026]
 gi|293406969|ref|ZP_06650893.1| hofQ [Escherichia coli FVEC1412]
 gi|298382711|ref|ZP_06992306.1| hofQ [Escherichia coli FVEC1302]
 gi|218434078|emb|CAR14995.1| fimbrial transporter [Escherichia coli UMN026]
 gi|291425780|gb|EFE98814.1| hofQ [Escherichia coli FVEC1412]
 gi|298276547|gb|EFI18065.1| hofQ [Escherichia coli FVEC1302]
          Length = 412

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|332284397|ref|YP_004416308.1| general secretion pathway protein D [Pusillimonas sp. T7-7]
 gi|330428350|gb|AEC19684.1| general secretion pathway protein D [Pusillimonas sp. T7-7]
          Length = 792

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/315 (23%), Positives = 120/315 (38%), Gaps = 44/315 (13%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGPSKSFAADFGG 236
           S ++V++ L+     QV ++  I EV  D   + G Q    G   SS   S    A+F G
Sbjct: 463 SLREVIDQLDQR-RAQVLVESLIVEVSTDKAAEFGIQWMAGGNDLSSGNTSFMGGANFNG 521

Query: 237 KFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTA 279
             ++  G  ++  +                     +   +  ALE       L+ P L  
Sbjct: 522 SGINPSGITTIDALAQGLSLGVVKGTVDILGTEILNLGVLARALESKGDANVLSTPNLMT 581

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           +  + AS   G    + T   +T A        +VT  D G+ L   P +   G + + I
Sbjct: 582 LDNEEASIIVGRTVPFVTGQYTTSADGASNPFQTVTREDVGLTLRIRPQISEGGTVKMAI 641

Query: 333 QTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
             EVS       +AG     R R  +T V +  G  IVL GLL+D I      +P+L  I
Sbjct: 642 YQEVSSIDGAASSAGAGLITRKRALETNVLVDDGQIIVLGGLLEDTISDSTSAVPVLGDI 701

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P+LG LFR  + +R +T + +   P +V+                  D  +   +R N +
Sbjct: 702 PVLGNLFRYDKRSRTKTNLMVFLRPHIVRN---------------ARDGASVTLDRYNYM 746

Query: 452 YGPKEASEVEGQNYK 466
            G +    +    + 
Sbjct: 747 RGAQAGLPMRSTWFS 761


>gi|16131268|ref|NP_417850.1| protein required for the utilization of DNA as a carbon source;
           fimbrial transporter homolog [Escherichia coli str. K-12
           substr. MG1655]
 gi|74313896|ref|YP_312315.1| outer membrane porin HofQ [Shigella sonnei Ss046]
 gi|89110619|ref|AP_004399.1| predicted fimbrial transporter [Escherichia coli str. K-12 substr.
           W3110]
 gi|157158971|ref|YP_001464845.1| outer membrane porin HofQ [Escherichia coli E24377A]
 gi|170082908|ref|YP_001732228.1| fimbrial transporter [Escherichia coli str. K-12 substr. DH10B]
 gi|218555936|ref|YP_002388849.1| outer membrane porin HofQ [Escherichia coli IAI1]
 gi|229774932|ref|YP_690743.2| outer membrane porin HofQ [Shigella flexneri 5 str. 8401]
 gi|238902482|ref|YP_002928278.1| putative fimbrial transporter [Escherichia coli BW2952]
 gi|256025882|ref|ZP_05439747.1| outer membrane porin HofQ [Escherichia sp. 4_1_40B]
 gi|293453697|ref|ZP_06664116.1| hofQ [Escherichia coli B088]
 gi|307140075|ref|ZP_07499431.1| outer membrane porin HofQ [Escherichia coli H736]
 gi|331644090|ref|ZP_08345219.1| protein transport protein HofQ [Escherichia coli H736]
 gi|1170332|sp|P34749|HOFQ_ECOLI RecName: Full=Putative DNA transport protein HofQ; Flags: Precursor
 gi|606325|gb|AAA58188.1| hopQ [Escherichia coli str. K-12 substr. MG1655]
 gi|1789793|gb|AAC76416.1| protein required for the utilization of DNA as a carbon source;
           fimbrial transporter homolog [Escherichia coli str. K-12
           substr. MG1655]
 gi|73857373|gb|AAZ90080.1| putative transport portein [Shigella sonnei Ss046]
 gi|85676650|dbj|BAE77900.1| predicted fimbrial transporter [Escherichia coli str. K12 substr.
           W3110]
 gi|157081001|gb|ABV20709.1| protein transporter HofQ [Escherichia coli E24377A]
 gi|169890743|gb|ACB04450.1| predicted fimbrial transporter [Escherichia coli str. K-12 substr.
           DH10B]
 gi|218362704|emb|CAR00330.1| fimbrial transporter [Escherichia coli IAI1]
 gi|238862385|gb|ACR64383.1| predicted fimbrial transporter [Escherichia coli BW2952]
 gi|260447590|gb|ACX38012.1| type IV pilus secretin PilQ [Escherichia coli DH1]
 gi|291321823|gb|EFE61254.1| hofQ [Escherichia coli B088]
 gi|315137967|dbj|BAJ45126.1| outer membrane porin HofQ [Escherichia coli DH1]
 gi|323939390|gb|EGB35601.1| type IV pilus secretin PilQ [Escherichia coli E482]
 gi|331036384|gb|EGI08610.1| protein transport protein HofQ [Escherichia coli H736]
          Length = 412

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|297570196|ref|YP_003691540.1| general secretion pathway protein D [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926111|gb|ADH86921.1| general secretion pathway protein D [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 690

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 119/272 (43%), Gaps = 31/272 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222
           + V+  L+I    Q+ ++  IAE+       +G Q                    S++G 
Sbjct: 347 QTVIRQLDIR-RAQLMIEAVIAEISTARAVDLGIQWFSADADKVIGGTNFPGSGASMSGI 405

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAI 280
           ++G   S AA  G    + G       +L R  FSF  +++AL R      L+ P+L  +
Sbjct: 406 AAGDEGSIAALAGLGGFNMGVFSGSTEILGREFFSFGALVNALARDGDTNILSTPSLVTM 465

Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332
             Q A    G    + T S + GAT        +V   D G+ L   P V     I L+I
Sbjct: 466 DNQEAEIIVGQNVPFLTGSFTEGATGVGGSPFQTVERRDVGIKLRVKPQVTEGDVIRLQI 525

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + EVS       A  + +   R  +T+V +  G  +VL GL+ DD+Q+    +PLL  IP
Sbjct: 526 EQEVSSVERDDLAAGLVT-NTRNINTSVLVEDGKVLVLGGLISDDVQETVSKVPLLGDIP 584

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           + GALFR++R  R +  + +   P +++   M
Sbjct: 585 LFGALFRHTRSERSKRNLMVFLRPVILRDQEM 616


>gi|213622639|ref|ZP_03375422.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 250

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 118/249 (47%), Gaps = 8/249 (3%)

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAA 232
               + K ++ +++    QV L   I  +    L+++G + ++  ++     G   + ++
Sbjct: 1   GPGGAGKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSS 59

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   G +
Sbjct: 60  DLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSE 118

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPS 350
             Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G++ +
Sbjct: 119 IPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLA 178

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+
Sbjct: 179 IDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERREL 238

Query: 411 FIAATPFLV 419
            +  TP LV
Sbjct: 239 VVFITPRLV 247


>gi|91212863|ref|YP_542849.1| outer membrane porin HofQ [Escherichia coli UTI89]
 gi|117625659|ref|YP_858982.1| outer membrane porin HofQ [Escherichia coli APEC O1]
 gi|218560448|ref|YP_002393361.1| outer membrane porin HofQ [Escherichia coli S88]
 gi|237703118|ref|ZP_04533599.1| protein transporter HofQ [Escherichia sp. 3_2_53FAA]
 gi|91074437|gb|ABE09318.1| protein transport protein HofQ precursor [Escherichia coli UTI89]
 gi|115514783|gb|ABJ02858.1| putative transport protein HofQ precursor [Escherichia coli APEC
           O1]
 gi|218367217|emb|CAR04991.1| fimbrial transporter [Escherichia coli S88]
 gi|226902382|gb|EEH88641.1| protein transporter HofQ [Escherichia sp. 3_2_53FAA]
 gi|294490021|gb|ADE88777.1| protein transporter HofQ [Escherichia coli IHE3034]
 gi|312947939|gb|ADR28766.1| outer membrane porin HofQ [Escherichia coli O83:H1 str. NRG 857C]
 gi|323950048|gb|EGB45931.1| type IV pilus secretin PilQ [Escherichia coli H252]
 gi|323954672|gb|EGB50454.1| type IV pilus secretin PilQ [Escherichia coli H263]
          Length = 412

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|330938634|gb|EGH42200.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 554

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 118/273 (43%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------ 226
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG       
Sbjct: 280 QTQERLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTY 338

Query: 227 ------------SKSFAADFGGKFVSEGGDFSVKG---VLDRFSFETVLHALERATAIRT 271
                       S +  ++     +   G  S  G   V +    +  L A+E+      
Sbjct: 339 GLDNNGDEAGNTSGNLTSNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 398

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 399 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 457

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 458 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 517

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 518 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 550


>gi|188492932|ref|ZP_03000202.1| protein transporter HofQ [Escherichia coli 53638]
 gi|188488131|gb|EDU63234.1| protein transporter HofQ [Escherichia coli 53638]
          Length = 412

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|323966201|gb|EGB61637.1| type IV pilus secretin PilQ [Escherichia coli M863]
          Length = 412

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|331659679|ref|ZP_08360617.1| protein transport protein HofQ [Escherichia coli TA206]
 gi|331052894|gb|EGI24927.1| protein transport protein HofQ [Escherichia coli TA206]
          Length = 412

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|331654967|ref|ZP_08355966.1| protein transport protein HofQ [Escherichia coli M718]
 gi|331046982|gb|EGI19060.1| protein transport protein HofQ [Escherichia coli M718]
          Length = 412

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|170681657|ref|YP_001745634.1| outer membrane porin HofQ [Escherichia coli SMS-3-5]
 gi|170519375|gb|ACB17553.1| protein transporter HofQ [Escherichia coli SMS-3-5]
          Length = 412

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|323164950|gb|EFZ50741.1| transport protein hofQ [Shigella sonnei 53G]
          Length = 385

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 133 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 191

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 192 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 250

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 251 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 310

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 311 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 370

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 371 RELVVFITPRLV 382


>gi|291619222|ref|YP_003521964.1| HofQ [Pantoea ananatis LMG 20103]
 gi|291154252|gb|ADD78836.1| HofQ [Pantoea ananatis LMG 20103]
          Length = 413

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 13/249 (5%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGK 237
           +  L++  E QV L   I  +  + L ++G           I  +   P           
Sbjct: 166 IRALDVPLE-QVELAAHIVTISEEHLHELGVNWRLYNEGDVINRALRHPLLDIPLGLNSH 224

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            VS G   S    +     +  L ALE+   +  +A P L     Q+AS   G +  Y+ 
Sbjct: 225 DVSVGVTLS---RIGGKLLDLELSALEQENQVEIIASPRLFTSHQQTASIKQGTEIPYEV 281

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRK 355
            + ++GATS+   +  + +  TP VL  GRI L+I+   + P   V  GD  + S   ++
Sbjct: 282 SAGNSGATSIEFKEAVLGMEVTPAVLGNGRIQLKIRISQNVPGRAVQTGDSQVLSIDKQE 341

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            +T V +  G T+ L G+      + +  +PLL  +P++G+LFR     + + E+ I  T
Sbjct: 342 IETQVTVSDGQTLALGGIFHQQRTRGQRQVPLLGNLPVVGSLFRQHAEEQRKRELVIFMT 401

Query: 416 PFLVKPVAM 424
           P LV+  A+
Sbjct: 402 PRLVREAAL 410


>gi|229591502|ref|YP_002873621.1| general secretion pathway protein D [Pseudomonas fluorescens SBW25]
 gi|229363368|emb|CAY50509.1| general secretion pathway protein D [Pseudomonas fluorescens SBW25]
          Length = 740

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 18/261 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++  I EV+      +G Q  +   +   + +   +  G   + GG  +  G  D
Sbjct: 474 PLQVQIETRILEVKLTGELDLGVQWYLGRLAGNSTSTTVGNTAGSQGALGGGGAGLGAAD 533

Query: 253 RF-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
                    + +  LHALE     + L+ P+L  ++ Q A    G        + +TG +
Sbjct: 534 SLFYSFVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTS 593

Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKA 356
                SV     GV+L   P +   G + + IQ +VS    +     +  + P    R  
Sbjct: 594 DTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASSSNDTQNNPRISTRSV 653

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V + SG T++L GL+K D  +    +P L +IP L  LF N+  +++ TE+ +  TP
Sbjct: 654 STQVAVQSGQTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITP 713

Query: 417 FLVKPVAMRDLSRPDDHYSVE 437
            ++   +     +  D Y  +
Sbjct: 714 RVI--TSSSQARQVTDDYRQQ 732


>gi|260912709|ref|ZP_05919195.1| type IV pilus secretin PilQ [Pasteurella dagmatis ATCC 43325]
 gi|260633087|gb|EEX51252.1| type IV pilus secretin PilQ [Pasteurella dagmatis ATCC 43325]
          Length = 431

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPSKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  +                   S  S+    +F    
Sbjct: 185 EQIAIEARIVTISDESLKELGVRWGLLNPTELSHRVAGSLDANGFSQISEQLNVNFATSI 244

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 245 TPAGSLALQLAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVT 304

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           S      SV   +  + L  TP +    +I L +    + P   +   +G++ S   ++ 
Sbjct: 305 SGKNETQSVEFREAVLGLDVTPHISKDNQILLDLVVSQNSPGARVAYGSGEIVSIDKQEI 364

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D + +  + +P+L  IP++  LFR      ++ E+ I  TP
Sbjct: 365 NTQVVAKDGETIVLGGVFHDSMTKGVDKVPVLGDIPMIKHLFRKQNERHQKRELVIFVTP 424

Query: 417 FLVK 420
            ++K
Sbjct: 425 RILK 428


>gi|298485082|ref|ZP_07003178.1| Type IV pilus biogenesis protein PilQ [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160334|gb|EFI01359.1| Type IV pilus biogenesis protein PilQ [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 718

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 117/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSF 230
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG     ++
Sbjct: 444 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 502

Query: 231 AADFGGKFVSEGGD-------------------FSVKGVLDRFSFETVLHALERATAIRT 271
             D  G   S  G                      +  V +    +  L A+E+      
Sbjct: 503 GLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 562

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 563 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 621

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 622 VKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 681

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 682 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 714


>gi|227329158|ref|ZP_03833182.1| putative outer membrane porin HofQ [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 424

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 6/231 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +  + L+ +G    +             +F      +    +    L R 
Sbjct: 190 QVQLAAHIVTISSEHLQALGVNWGLGEGDVANKALRLNNFNVGLPVDTPAVNAGFHLARL 249

Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    +  L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +
Sbjct: 250 NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 309

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTI 368
             + +  TP +L  GRI L ++   + P   +  GD     +   ++  T V +  G TI
Sbjct: 310 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 369

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +     +PLL ++P+ G LFRN        E+ I  TP L+
Sbjct: 370 VLGGIFQQQKKNSDRQVPLLGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420


>gi|218702134|ref|YP_002409763.1| outer membrane porin HofQ [Escherichia coli IAI39]
 gi|331664993|ref|ZP_08365894.1| protein transport protein HofQ [Escherichia coli TA143]
 gi|218372120|emb|CAR19982.1| fimbrial transporter [Escherichia coli IAI39]
 gi|331057503|gb|EGI29489.1| protein transport protein HofQ [Escherichia coli TA143]
          Length = 412

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|195934879|ref|ZP_03080261.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. EC4024]
 gi|320191599|gb|EFW66249.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7
           str. EC1212]
 gi|326337648|gb|EGD61483.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7
           str. 1044]
 gi|326344601|gb|EGD68350.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7
           str. 1125]
          Length = 386

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|300974788|ref|ZP_07172732.1| type IV pilus secretin PilQ [Escherichia coli MS 45-1]
 gi|301050407|ref|ZP_07197293.1| type IV pilus secretin PilQ [Escherichia coli MS 185-1]
 gi|300297875|gb|EFJ54260.1| type IV pilus secretin PilQ [Escherichia coli MS 185-1]
 gi|300410491|gb|EFJ94029.1| type IV pilus secretin PilQ [Escherichia coli MS 45-1]
 gi|315291661|gb|EFU51017.1| type IV pilus secretin PilQ [Escherichia coli MS 153-1]
          Length = 386

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|323974808|gb|EGB69920.1| type IV pilus secretin PilQ [Escherichia coli TW10509]
          Length = 412

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|297519102|ref|ZP_06937488.1| outer membrane porin HofQ [Escherichia coli OP50]
 gi|300907468|ref|ZP_07125113.1| type IV pilus secretin PilQ [Escherichia coli MS 84-1]
 gi|300931080|ref|ZP_07146434.1| type IV pilus secretin PilQ [Escherichia coli MS 187-1]
 gi|301302267|ref|ZP_07208399.1| type IV pilus secretin PilQ [Escherichia coli MS 124-1]
 gi|300400806|gb|EFJ84344.1| type IV pilus secretin PilQ [Escherichia coli MS 84-1]
 gi|300461100|gb|EFK24593.1| type IV pilus secretin PilQ [Escherichia coli MS 187-1]
 gi|300842430|gb|EFK70190.1| type IV pilus secretin PilQ [Escherichia coli MS 124-1]
 gi|315255979|gb|EFU35947.1| type IV pilus secretin PilQ [Escherichia coli MS 85-1]
 gi|320199559|gb|EFW74149.1| Type IV pilus biogenesis protein PilQ [Escherichia coli EC4100B]
 gi|323154220|gb|EFZ40423.1| transport protein hofQ [Escherichia coli EPECa14]
 gi|323162775|gb|EFZ48612.1| transport protein hofQ [Escherichia coli E128010]
          Length = 386

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|330972847|gb|EGH72913.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 775

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 119/309 (38%), Gaps = 21/309 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEV 205
            G     +    +  ++    S     +   +  K++ + +        QV ++  I EV
Sbjct: 454 SGSGGNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEV 513

Query: 206 RRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFE 257
           +      +G Q  +     +SG + +     G +     G  ++      F      + +
Sbjct: 514 QLTGELDMGVQWYLGRLAGNSGTTGNVTNTSGSQGAIGTGGAALASTDAFFYSFVSNNLQ 573

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHD 311
             L ALE     + L+ P+L  ++ Q A    G        S +T +++      V    
Sbjct: 574 VALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNSSTDTTLSSVEYVQ 633

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
            GV+L   P +   G + + IQ +VS       G +A   P    R   T V   SG T+
Sbjct: 634 TGVILDVVPRINPGGLVYMDIQQQVSSADTDTTGNDANGNPRISTRSVATQVAAQSGQTV 693

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++   +     
Sbjct: 694 LLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKNRTELIVLITPRVI--TSSSQAR 751

Query: 429 RPDDHYSVE 437
           +  D Y  +
Sbjct: 752 QVTDDYRQQ 760


>gi|300822816|ref|ZP_07102952.1| type IV pilus secretin PilQ [Escherichia coli MS 119-7]
 gi|300524582|gb|EFK45651.1| type IV pilus secretin PilQ [Escherichia coli MS 119-7]
 gi|324018703|gb|EGB87922.1| type IV pilus secretin PilQ [Escherichia coli MS 117-3]
 gi|332996422|gb|EGK16049.1| transport protein hofQ [Shigella flexneri VA-6]
 gi|332996664|gb|EGK16289.1| transport protein hofQ [Shigella flexneri K-272]
          Length = 386

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|333013071|gb|EGK32447.1| transport protein hofQ [Shigella flexneri K-227]
          Length = 386

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|301023148|ref|ZP_07186952.1| type IV pilus secretin PilQ [Escherichia coli MS 196-1]
 gi|299880971|gb|EFI89182.1| type IV pilus secretin PilQ [Escherichia coli MS 196-1]
          Length = 389

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 137 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 195

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 196 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 374

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 375 RELVVFITPRLV 386


>gi|90406756|ref|ZP_01214949.1| putative type II secretory pathway, component EpsD [Psychromonas
           sp. CNPT3]
 gi|90312209|gb|EAS40301.1| putative type II secretory pathway, component EpsD [Psychromonas
           sp. CNPT3]
          Length = 658

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/315 (23%), Positives = 128/315 (40%), Gaps = 30/315 (9%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAADFG 235
           +S   V+  L+I    QV ++  I E+       +  Q + +   S   G   +      
Sbjct: 330 ASLSSVIRKLDIR-RAQVLVEAIIVEISEGNGINLSVQFATSAGGSQFHGNGATTGDAIN 388

Query: 236 GKF----------VSEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G +          VS        GV+     ++  +L AL  +T    LA P++  +  Q
Sbjct: 389 GAYQIRHDGDLSDVSSAISKIAGGVVGYLGSNWGVMLQALSSSTGSNILATPSIMTLDNQ 448

Query: 284 SASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            ASF  G +    T S+S+        ++   + GV L+ TP +     + L I+ EVS 
Sbjct: 449 EASFLVGDEVPVLTGSTSSDDNDNPFQTIERKEIGVKLNVTPQINEGDSVQLVIEQEVSS 508

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                N  D+  +  R   TTV + SG TIV+ GL+ + + +  + IPLL  IP LG LF
Sbjct: 509 IKDSTNTVDV-VFSTRSVKTTVLVKSGQTIVIGGLIDEKVIESVDKIPLLGDIPWLGNLF 567

Query: 399 RNSRFNREETEIFIAATPFLVKP------VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           +++R   E+  + I     +++       ++MR  S   D    + +             
Sbjct: 568 KSTRNTTEKRNLMIFLRATIIRDDVTMNELSMRKYSMIRDMQKKQREIGINLMPNSESPL 627

Query: 453 GPK--EASEVEGQNY 465
            P+  +  E++   +
Sbjct: 628 LPEWGKTQEIDADTF 642


>gi|320197345|gb|EFW71960.1| Type IV pilus biogenesis protein PilQ [Escherichia coli WV_060327]
          Length = 386

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTA 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|300898927|ref|ZP_07117225.1| type IV pilus secretin PilQ [Escherichia coli MS 198-1]
 gi|300357442|gb|EFJ73312.1| type IV pilus secretin PilQ [Escherichia coli MS 198-1]
          Length = 386

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|300987128|ref|ZP_07178014.1| type IV pilus secretin PilQ [Escherichia coli MS 200-1]
 gi|300306272|gb|EFJ60792.1| type IV pilus secretin PilQ [Escherichia coli MS 200-1]
 gi|323189024|gb|EFZ74308.1| transport protein hofQ [Escherichia coli RN587/1]
 gi|324009420|gb|EGB78639.1| type IV pilus secretin PilQ [Escherichia coli MS 57-2]
 gi|324014615|gb|EGB83834.1| type IV pilus secretin PilQ [Escherichia coli MS 60-1]
 gi|330909424|gb|EGH37938.1| type 4 pilus biogenesis protein PilQ [Escherichia coli AA86]
          Length = 386

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|332345342|gb|AEE58676.1| transport protein PilQ [Escherichia coli UMNK88]
          Length = 386

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|284923383|emb|CBG36477.1| protein transport protein [Escherichia coli 042]
          Length = 386

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|300815414|ref|ZP_07095639.1| type IV pilus secretin PilQ [Escherichia coli MS 107-1]
 gi|300919331|ref|ZP_07135842.1| type IV pilus secretin PilQ [Escherichia coli MS 115-1]
 gi|300926924|ref|ZP_07142688.1| type IV pilus secretin PilQ [Escherichia coli MS 182-1]
 gi|300946869|ref|ZP_07161109.1| type IV pilus secretin PilQ [Escherichia coli MS 116-1]
 gi|300956717|ref|ZP_07168988.1| type IV pilus secretin PilQ [Escherichia coli MS 175-1]
 gi|301329693|ref|ZP_07222442.1| type IV pilus secretin PilQ [Escherichia coli MS 78-1]
 gi|301645828|ref|ZP_07245743.1| type IV pilus secretin PilQ [Escherichia coli MS 146-1]
 gi|309794656|ref|ZP_07689078.1| type IV pilus secretin PilQ [Escherichia coli MS 145-7]
 gi|110616771|gb|ABF05438.1| putative transport portein [Shigella flexneri 5 str. 8401]
 gi|300316473|gb|EFJ66257.1| type IV pilus secretin PilQ [Escherichia coli MS 175-1]
 gi|300413587|gb|EFJ96897.1| type IV pilus secretin PilQ [Escherichia coli MS 115-1]
 gi|300417082|gb|EFK00393.1| type IV pilus secretin PilQ [Escherichia coli MS 182-1]
 gi|300453478|gb|EFK17098.1| type IV pilus secretin PilQ [Escherichia coli MS 116-1]
 gi|300532306|gb|EFK53368.1| type IV pilus secretin PilQ [Escherichia coli MS 107-1]
 gi|300844205|gb|EFK71965.1| type IV pilus secretin PilQ [Escherichia coli MS 78-1]
 gi|301075906|gb|EFK90712.1| type IV pilus secretin PilQ [Escherichia coli MS 146-1]
 gi|308121706|gb|EFO58968.1| type IV pilus secretin PilQ [Escherichia coli MS 145-7]
 gi|315619010|gb|EFU99593.1| transport protein hofQ [Escherichia coli 3431]
 gi|320181878|gb|EFW56784.1| Type IV pilus biogenesis protein PilQ [Shigella boydii ATCC 9905]
 gi|323182850|gb|EFZ68251.1| transport protein hofQ [Escherichia coli 1357]
 gi|332085536|gb|EGI90702.1| transport protein hofQ [Shigella boydii 5216-82]
          Length = 386

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|326796946|ref|YP_004314766.1| type II and III secretion system protein [Marinomonas mediterranea
           MMB-1]
 gi|326547710|gb|ADZ92930.1| type II and III secretion system protein [Marinomonas mediterranea
           MMB-1]
          Length = 398

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 5/230 (2%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           A   Q+ ++  IA+V R   K +G     T    G  ++         +      +V+  
Sbjct: 170 APVRQIEIQAHIAQVHRSAQKTLGVNWQ-TVIEDGTRQALTGMVNLNAIGATSSLAVETT 228

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                   +L ALE       +++P +    GQSA   SG +  Y+        T+V   
Sbjct: 229 RGSSRLSLLLDALETDGFANVISKPKIVTAEGQSARIESGTEIPYQV--QHDDVTTVEFR 286

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
             G++L  TP V   G + L +        +G     +PS    + +T VE+  G T+VL
Sbjct: 287 QAGLMLEVTPIVKEQGVLRLDLNIHQD--SVGEMVNGVPSLETNRLNTQVEVKDGETLVL 344

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            G+ + +  +    +P+   +P+LGALFR+     E+ E+ +  TP L++
Sbjct: 345 GGIFRQEKFENISKVPVFGDLPVLGALFRHRSDKTEKVELLVFITPKLLQ 394


>gi|157162867|ref|YP_001460185.1| outer membrane porin HofQ [Escherichia coli HS]
 gi|254038556|ref|ZP_04872612.1| transporter HofQ [Escherichia sp. 1_1_43]
 gi|157068547|gb|ABV07802.1| protein transporter HofQ [Escherichia coli HS]
 gi|226839062|gb|EEH71085.1| transporter HofQ [Escherichia sp. 1_1_43]
 gi|323934619|gb|EGB31019.1| type IV pilus secretin PilQ [Escherichia coli E1520]
          Length = 412

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP+ G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|301019596|ref|ZP_07183756.1| type IV pilus secretin PilQ [Escherichia coli MS 69-1]
 gi|300399184|gb|EFJ82722.1| type IV pilus secretin PilQ [Escherichia coli MS 69-1]
          Length = 386

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|327251020|gb|EGE62713.1| transport protein hofQ [Escherichia coli STEC_7v]
          Length = 386

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|302189475|ref|ZP_07266148.1| type II and III secretion system protein:NolW-like:NolW-like
           [Pseudomonas syringae pv. syringae 642]
          Length = 701

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +     + SG S   A 
Sbjct: 427 QTQERLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGRTNISGTSNWSAG 485

Query: 233 DFGGKFVSEGGDFSVKG---------------------VLDRFSFETVLHALERATAIRT 271
               +    G   +  G                     V +    +  L A+E+      
Sbjct: 486 GLDNRGDEAGNTGNSLGPNIPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEI 545

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697


>gi|307311947|ref|ZP_07591585.1| type IV pilus secretin PilQ [Escherichia coli W]
 gi|306908091|gb|EFN38591.1| type IV pilus secretin PilQ [Escherichia coli W]
 gi|315062668|gb|ADT76995.1| dsDNA transporter subunit [Escherichia coli W]
          Length = 402

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 150 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 208

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 209 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 267

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 268 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 327

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 328 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 387

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 388 RELVVFITPRLV 399


>gi|312968303|ref|ZP_07782513.1| transport protein hofQ [Escherichia coli 2362-75]
 gi|312287128|gb|EFR15038.1| transport protein hofQ [Escherichia coli 2362-75]
          Length = 386

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|187731764|ref|YP_001882066.1| outer membrane porin HofQ [Shigella boydii CDC 3083-94]
 gi|187428756|gb|ACD08030.1| protein transporter HofQ [Shigella boydii CDC 3083-94]
          Length = 412

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|306816271|ref|ZP_07450409.1| outer membrane porin HofQ [Escherichia coli NC101]
 gi|222035093|emb|CAP77838.1| Protein transport protein hofQ [Escherichia coli LF82]
 gi|305850667|gb|EFM51124.1| outer membrane porin HofQ [Escherichia coli NC101]
 gi|307628452|gb|ADN72756.1| outer membrane porin HofQ [Escherichia coli UM146]
 gi|315286025|gb|EFU45463.1| type IV pilus secretin PilQ [Escherichia coli MS 110-3]
          Length = 386

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|330886181|gb|EGH20082.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 428

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG  K    
Sbjct: 154 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 212

Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271
                   A + G    S                 +  V +    +  L A+E+      
Sbjct: 213 GLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 272

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 273 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 331

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 332 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 391

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 392 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 424


>gi|315295914|gb|EFU55227.1| type IV pilus secretin PilQ [Escherichia coli MS 16-3]
          Length = 386

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|251793894|ref|YP_003008626.1| protein transport protein HofQ [Aggregatibacter aphrophilus NJ8700]
 gi|247535293|gb|ACS98539.1| protein transport protein HofQ [Aggregatibacter aphrophilus NJ8700]
          Length = 474

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 132/324 (40%), Gaps = 23/324 (7%)

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           ++ E        T++   A ++  ++ ++      G + +   S    + S   L Q   
Sbjct: 124 VMTEEPTRLTTATIKLHFAKASEVMKSLTGG---SGSLLSPNGSLTFDDRSNLLLIQDEP 180

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----------ITGSS 223
              AN   KK++  L+   E Q+ ++  I  +  + LK++G +            I GS 
Sbjct: 181 KSIAN--LKKLIKELDKPIE-QIAIEARIVTMNGESLKELGVRWGMFNPTENAHRIGGSL 237

Query: 224 SGP-----SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           +G      +     +F       G        ++    +  L ALER   +  +A P L 
Sbjct: 238 AGNGFDNITNQLNVNFPTATTPAGSVALQVAKINGRLLDLELTALERENNVEIIASPRLL 297

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
             + ++AS   G +  Y  V+  +G+ SV   +  + L  TP +    +I L +    + 
Sbjct: 298 TTNKKAASIKQGTELPYILVNEKSGSQSVEFREAVLGLEVTPHISQDKQILLDLVVSQNA 357

Query: 339 PVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           P   V    G++ S   ++ +T V    G TIVL G+  D I +  + +PLL  IP +  
Sbjct: 358 PGSRVAHGLGEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKNVDKVPLLGDIPGVKH 417

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           LF       ++ E+ I  TP +++
Sbjct: 418 LFSKESERHQKRELVIFVTPHILR 441


>gi|66043674|ref|YP_233515.1| type II and III secretion system protein:NolW-like:NolW-like
           [Pseudomonas syringae pv. syringae B728a]
 gi|63254381|gb|AAY35477.1| type II and III secretion system protein:NolW-like:NolW-like
           [Pseudomonas syringae pv. syringae B728a]
          Length = 718

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 119/273 (43%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSF 230
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG     ++
Sbjct: 444 QTQERLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTY 502

Query: 231 AADFGG--------------KFVSEGGDFSVKGV-----LDRFSFETVLHALERATAIRT 271
             D  G               FV  G   +  G+      +    +  L A+E+      
Sbjct: 503 GLDNNGDEAGNTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 562

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 563 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 621

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 622 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 681

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 682 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 714


>gi|88861010|ref|ZP_01135645.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas tunicata D2]
 gi|88816938|gb|EAR26758.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas tunicata D2]
          Length = 659

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 108/262 (41%), Gaps = 24/262 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSFAA------- 232
           ++++  L++A   QV ++  +  VR  + + +G +   +    + G + + A        
Sbjct: 400 RRMVETLDVA-VKQVVIESRMVTVRDSVQEDLGIRWGFSDQQLTDGIAGTLAGAQKISNG 458

Query: 233 -----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                      +      +      +  + D    +  L ALE+      +A P +T  +
Sbjct: 459 VIPTLAERLNVNLAVTNPAGSIGMHIAKLADGTLIDLELSALEQENKAEIIASPRITTAN 518

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-- 339
            + A    G +  Y   +SS GAT+V      + L  TP +    ++ L +      P  
Sbjct: 519 QKKARIEQGTEIPYVQAASS-GATTVEFKKAVLSLEVTPHITPDNKVILDLVITQDTPGD 577

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            +    G+  +   ++  T V + +G TIVL G+ +  +      +PLL  IP LGALF+
Sbjct: 578 TVQTPTGNAVAINTQEIRTQVLVENGQTIVLGGIYQQQVINSSSKVPLLGDIPYLGALFK 637

Query: 400 NSRFNREETEIFIAATPFLVKP 421
            +    E+ E+ I  TP ++K 
Sbjct: 638 RTSEKTEKKELLIFVTPKILKD 659


>gi|212634883|ref|YP_002311408.1| type II and III secretion system protein:NolW-like protein
           [Shewanella piezotolerans WP3]
 gi|212556367|gb|ACJ28821.1| Type II and III secretion system protein:NolW-like protein
           [Shewanella piezotolerans WP3]
          Length = 688

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 128/300 (42%), Gaps = 26/300 (8%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRN-QYANSSSKKVMNLLNIAGEDQVTLKVTI 202
            ++L G   ++  S+ +V + E   +   ++ +    S  +++ +L+I  + QV ++  +
Sbjct: 387 AILLKGEDSSLLSSRGSVAVDERTNTLLVKDTEETLESIYRLIEVLDIPIK-QVLIEARM 445

Query: 203 AEVRRDILKQIGFQHSITGSSS--GPSKSF--AADFGGKFVSEGGD-------------- 244
             V+ D+ + +G +  +T      G S S   A D     +    D              
Sbjct: 446 VTVKDDVAEDLGVRWGVTDQQGTKGTSGSLEGANDIAAGILPSLNDRLNVNLPAAPVNAT 505

Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              FSV  + D    +  L ALE+      +A P +   + ++A    G +  Y   SSS
Sbjct: 506 SIAFSVAKLADGTVLDLELSALEQENKGEIIASPRIMTSNQKAAYIEQGVEIPYVEASSS 565

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTT 359
            GAT+VT     + L  TP +    R+ L ++        V+    G+  S   ++  T 
Sbjct: 566 -GATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKVVATPTGEAVSIDTQRIGTQ 624

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V +  G TIVL G+ +  +      +PLL  IP LG +FR++    E  E+ I  TP +V
Sbjct: 625 VLVDHGETIVLGGIYQQQLISRVSKVPLLGDIPYLGFMFRSTSDKNERQELLIFVTPKIV 684


>gi|77456637|ref|YP_346142.1| type II and III secretion system protein [Pseudomonas fluorescens
           Pf0-1]
 gi|77380640|gb|ABA72153.1| pilus secretin [Pseudomonas fluorescens Pf0-1]
          Length = 692

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 112/271 (41%), Gaps = 21/271 (7%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
           + Q      ++++  L+I    QV ++  I E   D  K +G +   +  + G   +   
Sbjct: 420 QTQDRLDELRRIVAQLDIP-VRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGV 478

Query: 233 DFGGKF-------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
             G                      V+      +  + D    +  L A+E+      ++
Sbjct: 479 SNGSSTTIGTPGSTSTNSPFVDMGTVNNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVS 538

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           +P +     ++A    G +  Y+  SSS GATSV+  +  + L  TP +    RI + ++
Sbjct: 539 QPKVVTSDKETAKILKGTEIPYQEASSS-GATSVSFKEASLSLEVTPQITPDNRIIMEVK 597

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
               EP       D+P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P 
Sbjct: 598 VTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFLGDVPY 657

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           LG LFR    + +++E+ +  TP ++   A+
Sbjct: 658 LGRLFRRDVVSEKKSELLVFLTPRIMNNQAI 688


>gi|191167908|ref|ZP_03029712.1| protein transporter HofQ [Escherichia coli B7A]
 gi|190902081|gb|EDV61826.1| protein transporter HofQ [Escherichia coli B7A]
          Length = 412

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 119/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G 
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGV 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|330964738|gb|EGH64998.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 701

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG  K    
Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTY 485

Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271
                   A +  G   S                 +  V +    +  L A+E+      
Sbjct: 486 GLDDNGDEAGNTSGNLTSNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697


>gi|320330838|gb|EFW86812.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 701

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG  K    
Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 485

Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271
                   A + G    S                 +  V +    +  L A+E+      
Sbjct: 486 GLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697


>gi|257483507|ref|ZP_05637548.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330984730|gb|EGH82833.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009590|gb|EGH89646.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 701

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG  K    
Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 485

Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271
                   A + G    S                 +  V +    +  L A+E+      
Sbjct: 486 GLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697


>gi|71733370|ref|YP_272697.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71553923|gb|AAZ33134.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 701

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG  K    
Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 485

Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271
                   A + G    S                 +  V +    +  L A+E+      
Sbjct: 486 GLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697


>gi|145632680|ref|ZP_01788414.1| competence protein E [Haemophilus influenzae 3655]
 gi|144986875|gb|EDJ93427.1| competence protein E [Haemophilus influenzae 3655]
          Length = 401

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 142 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLAGNSFENIADNLNVNFATTT 201

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 202 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 261

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 262 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 321

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 322 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 381

Query: 417 FLVK 420
            ++K
Sbjct: 382 HILK 385


>gi|251787909|ref|YP_003002630.1| putative outer membrane porin HofQ [Dickeya zeae Ech1591]
 gi|247536530|gb|ACT05151.1| type IV pilus secretin PilQ [Dickeya zeae Ech1591]
          Length = 433

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 6/237 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
           QV L   I  +  + LK +G    +    +        +F      E    +       L
Sbjct: 194 QVQLAAHIVTISSEHLKALGVNWGLGDGMATGQALQMNNFNVSLPIESPAINAGFHLAKL 253

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    +  L ALE+   +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +
Sbjct: 254 NGRLLDLELMALEQENEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 313

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368
             + +  TP +L  G+I L +    + P   +     G++ +   ++  T V +  G TI
Sbjct: 314 AVLGMEVTPRILHGGQITLNLLISQNMPGRAIKQGENGEILAIDKQEIQTQVTVQDGETI 373

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           VL G+ +    Q +  +P L  +P +GA FR+        E+ I  TP L++    +
Sbjct: 374 VLGGIFQQQKNQAERQVPGLGALPGIGAWFRSGNRQHTRRELVIFITPTLIQAAKRK 430


>gi|170018373|ref|YP_001723327.1| outer membrane porin HofQ [Escherichia coli ATCC 8739]
 gi|169753301|gb|ACA76000.1| type IV pilus secretin PilQ [Escherichia coli ATCC 8739]
          Length = 386

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP+ G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|330877965|gb|EGH12114.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 701

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG  K    
Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTY 485

Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271
                   A +  G   S                 +  V +    +  L A+E+      
Sbjct: 486 GLDNNGDEAGNTSGNLTSNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697


>gi|320322061|gb|EFW78157.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 701

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG  K    
Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 485

Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271
                   A + G    S                 +  V +    +  L A+E+      
Sbjct: 486 GLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697


>gi|261823291|ref|YP_003261397.1| outer membrane porin HofQ [Pectobacterium wasabiae WPP163]
 gi|261607304|gb|ACX89790.1| type IV pilus secretin PilQ [Pectobacterium wasabiae WPP163]
          Length = 424

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 6/231 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +  + L+ +G    +   ++        +F      +    +    L R 
Sbjct: 190 QVQLAAHIVTISSEHLQALGVNWGLGEGNAANKALRLNNFNVGLPVDTPAVNAGFHLARL 249

Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    +  L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +
Sbjct: 250 NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 309

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTI 368
             + +  TP +L  GRI L ++   + P   +  GD     +   ++  T V +  G TI
Sbjct: 310 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 369

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +     +P+L ++P+ G LFRN        E+ I  TP L+
Sbjct: 370 VLGGIFQQQKKNSGSQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420


>gi|330872058|gb|EGH06207.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 681

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG  K    
Sbjct: 407 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 465

Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271
                   A + G    S                 +  V +    +  L A+E+      
Sbjct: 466 GLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 525

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 526 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 584

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 585 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 644

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 645 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 677


>gi|320175756|gb|EFW50842.1| Type IV pilus biogenesis protein PilQ [Shigella dysenteriae CDC
           74-1112]
          Length = 386

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|327395552|dbj|BAK12974.1| protein transport protein HofQ precursor HofQ [Pantoea ananatis
           AJ13355]
          Length = 430

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 109/245 (44%), Gaps = 13/245 (5%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGK 237
           +  L++  E QV L   I  +  + L ++G           I  +   P    +      
Sbjct: 176 IGALDVPLE-QVELAAHIVTISEEHLHELGVNWRLYNEGDVINRALRHPLLDISLGLNSH 234

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            VS G   S    +     +  L ALE+   +  +A P L     Q+AS   G +  Y+ 
Sbjct: 235 DVSVGVTLS---RIGGKLLDLELSALEQENQVEIIASPRLFTSHQQTASIKQGTEIPYEV 291

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRK 355
            + ++GATS+   +  + +  TP VL  GRI L+I+   + P   V  GD  + S   ++
Sbjct: 292 SAGNSGATSIEFKEAVLGMEVTPAVLGNGRIQLKIRISQNVPGRAVQTGDSQVLSIDKQE 351

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            +T V +  G T+ L G+      + +  +PLL  +P++G+LFR     + + E+ I  T
Sbjct: 352 IETQVTVSDGQTLALGGIFHQQRTRGQRQVPLLGNLPVVGSLFRQHAEEQRKRELVIFMT 411

Query: 416 PFLVK 420
           P LV+
Sbjct: 412 PRLVQ 416


>gi|207723669|ref|YP_002254067.1| type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum MolK2]
 gi|206588873|emb|CAQ35835.1| type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum MolK2]
          Length = 778

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 89/404 (22%), Positives = 157/404 (38%), Gaps = 61/404 (15%)

Query: 51  SIGLNKVIILQVPVDVQD-VLVSDPTKADVV--VHSPRTMYLFGKNVGQANVILI--GHD 105
           + GLN +    V  D++  + VS+ T  D V  +     +    K V  AN + I     
Sbjct: 213 TTGLNVIFDRDVRTDLKTTIFVSNATLEDTVDMILMQSQL---AKKVMNANTVFIYPATA 269

Query: 106 GKQMLNLDILI------ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            KQ    D+ +        D  H+E  L+  +    I  +  ++TV +     +I+ ++R
Sbjct: 270 AKQQEYQDLKVRTFQLSNTDAKHIEALLKSLLKIKEIVTDERANTVSIRATPESIRVAER 329

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +   +                           E +V L+V + EV RD L  +G     
Sbjct: 330 MIAAQD-------------------------LPEPEVMLEVEVLEVSRDRLTDLGIDWPN 364

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           + +   PS   AA +G          +  G+    +F+         T    LA P +  
Sbjct: 365 SFTLGTPSS--AATWGDLHHLTINRLTASGLSATANFKL------TDTDANLLASPRIRT 416

Query: 280 ISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            + + A    G +    + SS         + S+   D G+ L   P V     +G+++ 
Sbjct: 417 RNKEKAKILIGDKVPVISSSSVPSTSGPVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMS 476

Query: 334 TEVSEPVIGVNAGDMPS--------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            EVS     +++ +  +           R A T++ L  G T VL GL++D+ +     +
Sbjct: 477 LEVSNITQIISSSNAQTGLSSLAYQIGTRNASTSLRLKDGETQVLGGLIQDEDRDAANKV 536

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           P L ++P+LG LF N   + ++TEI +  TP +V+P    D   
Sbjct: 537 PGLGQLPVLGRLFSNHNGDHKKTEIVLQITPHIVRPQPAADADT 580


>gi|119477881|ref|ZP_01618004.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2143]
 gi|119449042|gb|EAW30283.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2143]
          Length = 689

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 127/345 (36%), Gaps = 43/345 (12%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            D   L + L +   +   R+   ++   L G      ++                    
Sbjct: 292 ADATELSVVLSKVAQNME-RMSENNEKTRLAGKSEATIEADDGTNSLIVTAEADTMQLLL 350

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                 V+  L+I    QV ++V I E+  +  + +G +      S G   S  +  G  
Sbjct: 351 A-----VVAKLDIR-RAQVQVEVIIVEMTDNDGRDLGVEWLFINDSGGYGASNNSGLGST 404

Query: 238 FVSE-------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                                        G    +  + D  SF  V++AL++ +    L
Sbjct: 405 IAGAAFETNNNGSSVDARGGIAEAIGGAAGQVLGIGRLDDDLSFNVVVNALQQNSEANIL 464

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTV 322
           + P+L  +  + ASF  G    + T S +   +          +V   + G+ L  TP +
Sbjct: 465 STPSLLTLDNEEASFVVGQSIPFVTGSYTATGSSSSNPDNPFQTVERENVGITLRVTPQI 524

Query: 323 LSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
                + L I  EVS  +         P    RK +TT+   +G TIVL GL++D+I + 
Sbjct: 525 NEGDSLILAISQEVSNVIGTSTILNSNPITSERKIETTILADNGQTIVLGGLIEDNITES 584

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            + +P+L  IP LG LFR++  +  +  + I   P +V+     D
Sbjct: 585 IQKVPILGDIPFLGRLFRSTSTSVGKKNLLIFLRPTIVRDKRQMD 629


>gi|315125412|ref|YP_004067415.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas sp. SM9913]
 gi|315013925|gb|ADT67263.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas sp. SM9913]
          Length = 696

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 106/261 (40%), Gaps = 24/261 (9%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---------- 229
           S ++++  L+I    QV ++  +  VR ++ + +G +   +        S          
Sbjct: 435 SVRRMVETLDIP-VKQVVIEARMVTVRDNVTEDLGVRWGFSDQQGSDGVSGTLEGAETIS 493

Query: 230 ----------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                        +      S      +  + +    +  L ALE       +A P +TA
Sbjct: 494 NGNIPSLSDRLNVNLPVANPSASIGMHIAKLANGTLIDLELTALEEENKGEIIASPRITA 553

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            + Q A    G +  Y   S+S+GAT+V+     + L  TP +    ++ L +       
Sbjct: 554 ANQQKARIEQGTEIPYVE-SASSGATTVSFKKAVLSLEVTPHITPDNKVILNLIITQDTR 612

Query: 340 VIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
              V  G  P+     ++ +T V + +G T+VL G+ +  I    + +PLL  +P +G L
Sbjct: 613 GDTVQTGTGPAVAIDTQQIETQVLVENGQTVVLGGIFQQQIINSTKKVPLLGDLPYVGRL 672

Query: 398 FRNSRFNREETEIFIAATPFL 418
           F+++    E+ E+ I  TP +
Sbjct: 673 FKSTSEFNEKRELLIFVTPKI 693


>gi|289648291|ref|ZP_06479634.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 701

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 117/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSF 230
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG     ++
Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 485

Query: 231 AADFGGKFVSEGGD-------------------FSVKGVLDRFSFETVLHALERATAIRT 271
             D  G   S  G                      +  V +    +  L A+E+      
Sbjct: 486 GLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 605 VKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697


>gi|289625073|ref|ZP_06458027.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330865718|gb|EGH00427.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 701

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 117/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSF 230
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG     ++
Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 485

Query: 231 AADFGGKFVSEGGD-------------------FSVKGVLDRFSFETVLHALERATAIRT 271
             D  G   S  G                      +  V +    +  L A+E+      
Sbjct: 486 GLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 605 VKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697


>gi|300937316|ref|ZP_07152157.1| type IV pilus secretin PilQ [Escherichia coli MS 21-1]
 gi|300457639|gb|EFK21132.1| type IV pilus secretin PilQ [Escherichia coli MS 21-1]
          Length = 386

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSTLEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|148874|gb|AAA24947.1| ORF 1 [Haemophilus influenzae]
          Length = 371

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I           GS +G S      +   +F    
Sbjct: 112 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 171

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 172 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 231

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   +     ++ S   ++ 
Sbjct: 232 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 291

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 292 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 351

Query: 417 FLVK 420
            ++K
Sbjct: 352 HILK 355


>gi|261867159|ref|YP_003255081.1| protein transport protein HofQ [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412491|gb|ACX81862.1| protein transport protein HofQ [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 469

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 90/447 (20%), Positives = 166/447 (37%), Gaps = 32/447 (7%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIK----EANAAVINISDVEIGKGKKISI--GLNKV 57
           L R     +    F S    A+  P+     +    V  +  + +     + I   L   
Sbjct: 5   LSRRLKCGLFFGCFLSLAVQAEQNPVFSIRLKQAPLVPTLQQLALAHNTNLIIDDELQGT 64

Query: 58  IILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
           + LQ+  VD+  +  S      + +     +Y F K  G  N    G   +       + 
Sbjct: 65  VSLQLENVDLDQLFRSVAKIKQLDLWQENGIYYFTK--GDTNTKFAGKMEEPFPLSLPMA 122

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           E        T++   A ++  ++ ++      G + +   S    + S   L Q      
Sbjct: 123 EEPAQLTTATIKLHFAKASEVMKSLTGG---SGSLLSPNGSITFDDRSNLLLIQDEPRSV 179

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGP 226
            N   KK++  L+   E Q+ ++  I  +  + LK++G +  I           GS +G 
Sbjct: 180 RN--IKKLIKELDKPIE-QIAIEARIVTINDESLKELGVRWGIFSPTDNAHRIGGSLAGN 236

Query: 227 S-----KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                      +F       G        ++    +  L ALER   +  +A P L   +
Sbjct: 237 GFDNLVNQLNVNFPTTTTPAGSVALQVAKINGRLLDLELTALERENNVEIIASPRLLTTN 296

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV- 340
            +SAS   G +  Y  V+  +G+ SV   +  + L  TP +    +I L +    + P  
Sbjct: 297 KKSASIKQGTELPYILVNEKSGSQSVEFREAVLGLEVTPHISQDKQILLDLIVSQNSPGS 356

Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            +    G++ S   ++ +T V    G TIVL G+  D I +  + +P+L  IP +  LF 
Sbjct: 357 RVAYGLGEVVSIDKQEINTQVFAKDGETIVLGGVFSDTITKGTDKVPVLGDIPGIKHLFS 416

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRD 426
                 ++ E+ I  TP +++     D
Sbjct: 417 KESERHQKRELVIFVTPHILRKGETPD 443


>gi|227112152|ref|ZP_03825808.1| putative outer membrane porin HofQ [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 420

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 6/231 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +  + L+ +G    +   S+        +F      +    +    L R 
Sbjct: 186 QVQLAAHIVTISSEHLQALGVNWGLGEGSAANKALRLNNFNVGLPVDTPAINAGFHLARL 245

Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    +  L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +
Sbjct: 246 NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 305

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTI 368
             + +  TP +L  GRI L ++   + P   +  GD     +   ++  T V +  G TI
Sbjct: 306 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 365

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +     +P+L ++P+ G LFRN        E+ I  TP L+
Sbjct: 366 VLGGIFQQQKKNSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 416


>gi|312972346|ref|ZP_07786520.1| transport protein hofQ [Escherichia coli 1827-70]
 gi|310334723|gb|EFQ00928.1| transport protein hofQ [Escherichia coli 1827-70]
          Length = 386

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGNDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP+ G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|325294586|ref|YP_004281100.1| general secretion pathway protein D [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065034|gb|ADY73041.1| general secretion pathway protein D [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 630

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 17/253 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K+V++ ++I    QV ++V I E+  D L Q+G +      S G    F     G    +
Sbjct: 330 KEVIDSVDIKRP-QVFVEVQIVEMSMDKLLQLGVEWKFL--SRGNLVPFGGSLYGNLPLQ 386

Query: 242 GGDFSVKGVL---------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            G  S    L         D      +L+A  +   +  +A P +  +  + A       
Sbjct: 387 AGYPSASPGLLLGIAKWRGDTPDIGLLLNAYAKEGGVNVIATPQILTLDNEEAEINISKV 446

Query: 293 HLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-D 347
             Y T     +++    S    D G+ L  TP + + G + L+I  +V + V   NA   
Sbjct: 447 IPYSTGVKYDANNNPVISYDYKDVGITLKITPHITASGEVRLKIYEKVEDVVGYANADQT 506

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P    R+A TTV++  G T+V+ GL+K       E +P+L  IP+LG LF+ +    E+
Sbjct: 507 APITSKREAKTTVDVQDGQTLVIGGLIKSKKLTTIEKVPVLGNIPVLGNLFKKTGHQIEK 566

Query: 408 TEIFIAATPFLVK 420
           T + +  TP +V+
Sbjct: 567 TNLLVFITPRVVR 579


>gi|293390985|ref|ZP_06635319.1| protein transport protein HofQ [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951519|gb|EFE01638.1| protein transport protein HofQ [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 469

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 90/447 (20%), Positives = 166/447 (37%), Gaps = 32/447 (7%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIK----EANAAVINISDVEIGKGKKISI--GLNKV 57
           L R     +    F S    A+  P+     +    V  +  + +     + I   L   
Sbjct: 5   LSRWLKCGLFFGCFLSLTVQAEQNPVFSIRLKQAPLVPTLQQLALAHNTNLIIDDELQGT 64

Query: 58  IILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
           + LQ+  VD+  +  S      + +     +Y F K  G  N    G   +       + 
Sbjct: 65  VSLQLENVDLDQLFRSVAKIKQLDLCQENGIYYFIK--GDTNTKFAGKMEEPFPLSLPMA 122

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           E        T++   A ++  ++ ++      G + +   S    + S   L Q      
Sbjct: 123 EEPAQLTTATIKLHFAKASEVMKSLTGG---SGSLLSPNGSITFDDRSNLLLIQDEPRSV 179

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGP 226
            N   KK++  L+   E Q+ ++  I  +  + LK++G +  I           GS +G 
Sbjct: 180 RN--IKKLIKELDKPIE-QIAIEARIVTINDESLKELGVRWGIFNPTENAHRIGGSLAGN 236

Query: 227 S-----KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                      +F       G        ++    +  L ALER   +  +A P L   +
Sbjct: 237 GFDNLVNQLNVNFPTTTTPAGSVALQVAKINGRLLDLELTALERENNVEIIASPRLLTTN 296

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV- 340
            +SAS   G +  Y  V+  +G+ SV   +  + L  TP +    +I L +    + P  
Sbjct: 297 KKSASIKQGTELPYILVNEKSGSQSVEFREAVLGLEVTPHISQDKQILLDLIVSQNSPGS 356

Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            +    G++ S   ++ +T V    G TIVL G+  D I +  + +P+L  IP +  LF 
Sbjct: 357 RVAYGLGEVVSIDKQEINTQVFAKDGETIVLGGVFSDTITKGTDKVPVLGDIPGIKHLFS 416

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRD 426
                 ++ E+ I  TP +++     D
Sbjct: 417 KESERHQKRELVIFVTPHILRKGETPD 443


>gi|78484595|ref|YP_390520.1| type II and III secretion system protein [Thiomicrospira crunogena
           XCL-2]
 gi|78362881|gb|ABB40846.1| Type II secretion pathway protein D [Thiomicrospira crunogena
           XCL-2]
          Length = 703

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 77/393 (19%), Positives = 150/393 (38%), Gaps = 46/393 (11%)

Query: 58  IILQVPVDVQD---VLVSDPTKADVVVHSPRTMYLF----GKNVGQANVILIGHDGKQML 110
           +IL    D +     L++D    DV V S   + +      K      V+      + +L
Sbjct: 230 VILSGDQDTRREMRALIAD---LDVSVPSEGRVQVIYLHYAKAAELVPVLQKIATNRSLL 286

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +    +  D    E T+     +  ++V  + D  +   +    ++   A+ +S      
Sbjct: 287 S---SVSSDAKTSEATIPDATGN-GVQVNQLDDKTLKSRISIEAEERMNAIIISA----- 337

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
                   S  K V+  L+I    QV ++  + EV      ++G +    G +     +F
Sbjct: 338 ---PPGVVSVLKTVIKQLDIR-RAQVLIEAILVEVTETKQAELGVEWGAAGPNGVGLINF 393

Query: 231 AADFGGKFVSEGGDFSVKGVL-------------DRFSFETVLHALERATAIRTLAEPTL 277
           +        + G   +    +             D   +  ++ AL   +    L+ PTL
Sbjct: 394 SGTIPTIIGNAGNPAAQANAIGTGVNAAFGEVSADGTGWGALIRALNSDSEANILSTPTL 453

Query: 278 TAISGQSASFTSGGQHLYKTVSSS---------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
             +  + A    G +  ++T S +             ++   + G+ L  TP +     +
Sbjct: 454 LTLDNEEAEIVVGKEVPFQTGSYTSTGTSSTPTNPFNTIERKNVGLSLKVTPQINEGDEV 513

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I  E+S+ +   +A D+     R+  T V +  G  IVL GLL +   ++++ +P L
Sbjct: 514 FLEINQEISDVIPKGDAVDV-QTSKRQIKTRVIVGDGNVIVLGGLLTEKETEVEKKVPGL 572

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             IP LGALFR++   RE+  + +   P +V+ 
Sbjct: 573 GDIPGLGALFRSTSNEREKVNLMVFLRPVIVRD 605


>gi|121533454|ref|ZP_01665282.1| type II and III secretion system protein [Thermosinus
           carboxydivorans Nor1]
 gi|121308013|gb|EAX48927.1| type II and III secretion system protein [Thermosinus
           carboxydivorans Nor1]
          Length = 414

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 130/307 (42%), Gaps = 32/307 (10%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
              ++ +L   I D  ++V+  ++++V  G     +  ++A+                  
Sbjct: 134 ADEVKKSLALVIPDERLKVDEATNSLVFSGSPAESEALRQALA----------------- 176

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
                   L++  E QV+L+  +  + R+  K +GF    +G  +       +       
Sbjct: 177 -------ELDVPYE-QVSLEAQVVAINRNAAKDLGFDWQWSGLPANTEFDSTSGTTKTTR 228

Query: 240 SEGGDFSVK----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              G         G    F+F+  L AL  +   + LA+P +T I+G+ A    G +   
Sbjct: 229 EYPGVIKFGKAYDGTPYEFTFQAKLSALITSGEAKLLAKPKITTINGKEAKILIGDRIPV 288

Query: 296 KTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
               +  G   T++   D G+ L +TP + + G I   + TEVS P + V          
Sbjct: 289 LVERTENGKTTTTIEYIDAGIKLTYTPRINADGYITAAVHTEVSTPTL-VPEMKAYRVTT 347

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+A T V +  G T+V+ GL+ ++    K  +PLLS +P+LG LF +    + ETE+ I 
Sbjct: 348 REATTNVRMKDGDTMVIGGLISNEESGGKNRVPLLSDLPVLGKLFESVHKTKNETEVVIF 407

Query: 414 ATPFLVK 420
            T  +VK
Sbjct: 408 LTARIVK 414


>gi|325275672|ref|ZP_08141565.1| type IV pilus secretin PilQ [Pseudomonas sp. TJI-51]
 gi|324099192|gb|EGB97145.1| type IV pilus secretin PilQ [Pseudomonas sp. TJI-51]
          Length = 418

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 109/245 (44%), Gaps = 6/245 (2%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFV 239
           ++++  L++    QV ++  I E   D  K +G +    + G +  P KS   D G    
Sbjct: 174 RQLVAQLDVP-VRQVAIEARIVEANVDYEKALGVRWGSPLYGDNPLPGKSLFVDLG--VE 230

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             G    +  +      +  L A+E++     +++P +     ++A    G +  Y+  +
Sbjct: 231 RAGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQE-T 289

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +GATSV+  +  + L  TP +    ++ + ++    EP       ++P  R  + +  
Sbjct: 290 TKSGATSVSFREASLSLEVTPQITPDNKVIMAVRVTKDEPDYVNALNNVPPIRKNEVNAK 349

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V +  G TIV+ G+       + + +P L  +P +G LFR      +++E+ +  TP ++
Sbjct: 350 VRVADGETIVIGGVYSTSQNNVVDKVPFLGDLPYVGRLFRRDALQEKKSELLVFLTPRIM 409

Query: 420 KPVAM 424
              A+
Sbjct: 410 SDQAI 414


>gi|170719573|ref|YP_001747261.1| type IV pilus secretin PilQ [Pseudomonas putida W619]
 gi|169757576|gb|ACA70892.1| type IV pilus secretin PilQ [Pseudomonas putida W619]
          Length = 422

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 102/243 (41%), Gaps = 2/243 (0%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++  L++    QV ++  I E   D    +G +      S  P+              
Sbjct: 178 RQLVAQLDVP-VRQVEIEARIVEANVDYENSLGVRWGPRLYSEAPALGKDVFVDLGMERA 236

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G       +      +  L A+E+      +++P +   + ++A    G +  Y+  ++ 
Sbjct: 237 GSSIGFGVLRGGVLLDLELSAMEKTGNGEIISQPKVVTANNETARILKGTEVPYQE-TTK 295

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
           +GATSVT  +  + L  TP +   G++ + ++    EP       D+P  R  + +  V 
Sbjct: 296 SGATSVTFREASLSLEVTPQITPDGKVIMTVKVTKDEPDFVNALNDVPPIRKNEVNAKVR 355

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G TIV+ G+       + + +P    +P +G LFR      +++E+ +  TP ++  
Sbjct: 356 VADGETIVIGGVYSTTQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIMND 415

Query: 422 VAM 424
            A+
Sbjct: 416 QAI 418


>gi|289676481|ref|ZP_06497371.1| type II and III secretion system protein:NolW-like:NolW-like
           [Pseudomonas syringae pv. syringae FF5]
          Length = 701

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 117/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------ 226
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG       
Sbjct: 427 QTQERLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTY 485

Query: 227 ----------SKSFAADFGGKFVSEGGDFSVKGV-----LDRFSFETVLHALERATAIRT 271
                     + S        FV  G   +  G+      +    +  L A+E+      
Sbjct: 486 GLDNNGDEAGNTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697


>gi|237798101|ref|ZP_04586562.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020953|gb|EGI01010.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 701

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 114/273 (41%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +     + SG SK  A 
Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGRTNLSGSSKWSAG 485

Query: 233 DFGGKFVSEGGDFSVKG---------------------VLDRFSFETVLHALERATAIRT 271
                    G   +  G                     V +    +  L A+E+      
Sbjct: 486 GLDNNGDEAGNTGNNLGPNIPFVDLGAANATTGIGLGFVTNNTLLDLELSAMEKTGNGEI 545

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697


>gi|77361631|ref|YP_341206.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876542|emb|CAI87764.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 696

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 24/261 (9%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---------- 229
           S ++++  L+I    QV ++  +  VR ++ + +G +   +        S          
Sbjct: 435 SVRRMVETLDIP-VKQVVIEARMVTVRDNVTEDLGVRWGFSDQQGTDGISGTLEGAENIS 493

Query: 230 ----------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                        +      S      +  + +    +  L ALE       +A P +TA
Sbjct: 494 NGNIPSLSDRLNVNLPVANPSASIGMHIAKLANGTLIDLELTALEEENKGEIIASPRITA 553

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            + Q A    G +  Y   S+S+GAT+V+     + L  TP +    ++ L +       
Sbjct: 554 ANQQKARIEQGTEIPYVE-SASSGATTVSFKKAVLSLEVTPHITPDNKVILNLIITQDTR 612

Query: 340 VIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
              V  G  P+     ++ +T V + +G T+VL G+ +  I    + +PLL  IP +G L
Sbjct: 613 GDTVQTGTGPAVAIDTQQIETQVLVENGQTVVLGGIFQQQIINSTKKVPLLGDIPYIGRL 672

Query: 398 FRNSRFNREETEIFIAATPFL 418
           F+++    E+ E+ I  TP +
Sbjct: 673 FKSTSEFNEKRELLIFVTPKI 693


>gi|82545746|ref|YP_409693.1| outer membrane porin HofQ [Shigella boydii Sb227]
 gi|81247157|gb|ABB67865.1| putative transport portein [Shigella boydii Sb227]
          Length = 412

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|119943890|ref|YP_941570.1| general secretion pathway protein D [Psychromonas ingrahamii 37]
 gi|119862494|gb|ABM01971.1| general secretion pathway protein D [Psychromonas ingrahamii 37]
          Length = 662

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 16/257 (6%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------SSGPSKS 229
           SS   ++  L+I    QV ++  I EV       +  Q   T           ++G   +
Sbjct: 340 SSLTSIIRQLDIR-RAQVLVEAIIVEVSEGDGINLNVQWGTTNGGTQFQDSAVTTGNIVA 398

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              D      + G            ++  VL AL  AT    LA P+LT +  Q ASF  
Sbjct: 399 GTQDNDAAISAIGNISGGIAGYIGSNWGVVLQALSSATTSNILATPSLTTLDNQEASFIV 458

Query: 290 GGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           G +    T S+S+        ++   + G+ L  TP +     + + I+ EVS+     +
Sbjct: 459 GDEVPVLTGSTSSATNDNPFQTIERKEIGIKLKVTPQINEGDSVQMIIEQEVSDIKNDTS 518

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           A D+  +  R   TTV   SG TIV+ GL+ + +++  + +PLL  IP+LG LFR+++ +
Sbjct: 519 AVDV-IFSTRSVKTTVLAKSGETIVIGGLIDETVKETVQKVPLLGDIPLLGFLFRSTQSS 577

Query: 405 REETEIFIAATPFLVKP 421
            E+  + I     +++ 
Sbjct: 578 TEKRNLMIFLRATIIRD 594


>gi|330971735|gb|EGH71801.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 701

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG  K    
Sbjct: 427 QTQERLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTY 485

Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271
                   A + G    S                 +  V +    +  L A+E+      
Sbjct: 486 GLDNNGDEAGNTGSSVTSNVPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEI 545

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697


>gi|330977147|gb|EGH77105.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 701

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 117/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------ 226
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG       
Sbjct: 427 QTQERLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTY 485

Query: 227 ----------SKSFAADFGGKFVSEGGDFSVKGV-----LDRFSFETVLHALERATAIRT 271
                     + S        FV  G   +  G+      +    +  L A+E+      
Sbjct: 486 GLDNNGDEAGNTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697


>gi|319789871|ref|YP_004151504.1| general secretion pathway protein D [Thermovibrio ammonificans
           HB-1]
 gi|317114373|gb|ADU96863.1| general secretion pathway protein D [Thermovibrio ammonificans
           HB-1]
          Length = 638

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 63/259 (24%), Positives = 109/259 (42%), Gaps = 17/259 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K V+  +++    QV ++V I E+  D L Q+G +      S G    F     G    +
Sbjct: 335 KDVVKSIDVKRP-QVFVEVQIVEMSMDKLLQMGVEWKFL--SRGNYVPFGGSLYGNLPLQ 391

Query: 242 GGDFSVKGVL---------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            G  S    L                +L+A  +   +  +A P +  +  + A       
Sbjct: 392 PGYPSASPGLLLGIAKWRDGVPDIGLLLNAYAKEGGVNVIATPQILTLDNEEAEINISKV 451

Query: 293 HLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-D 347
             Y T     +++    S    D G+VL  TP + + G + L++  +V + V   NA   
Sbjct: 452 IPYSTGVKYDTNNNPVISYDYKDVGIVLKITPHITASGEVRLKVYEKVEDVVGYANADQT 511

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P    R+A TTV++  G T+V+ GL+K       E +P+L  IP++G LF+ +    E+
Sbjct: 512 APITSKREAKTTVDVHDGQTLVIGGLIKRKKLTTVEKVPVLGSIPVIGNLFKKTGHQIEK 571

Query: 408 TEIFIAATPFLVKPVAMRD 426
           T + +  TP +V+      
Sbjct: 572 TNLLVFITPHIVRNTEEEQ 590


>gi|229220650|ref|YP_052181.2| putative outer membrane porin HofQ [Pectobacterium atrosepticum
           SCRI1043]
          Length = 383

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 6/231 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +  + L+ +G    +    +        +F      +    +    L R 
Sbjct: 149 QVQLAAHIVTISSEHLQALGVNWGLGEGDAANKALRLNNFNVGLPVDMPAINAGFHLARL 208

Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    +  L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +
Sbjct: 209 NGRLLDLELMALEQESEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 268

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTI 368
             + +  TP +L  GRI L ++   + P   +  GD     +   ++  T V +  G TI
Sbjct: 269 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 328

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +     +P+LS+IP+ G LFRN        E+ I  TP L+
Sbjct: 329 VLGGIFQQQKKNSDRQVPILSEIPVFGHLFRNHTQQHTRRELVIFITPTLI 379


>gi|49613540|emb|CAG76991.1| putative type II secretion system protein [Pectobacterium
           atrosepticum SCRI1043]
          Length = 393

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 6/231 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +  + L+ +G    +    +        +F      +    +    L R 
Sbjct: 159 QVQLAAHIVTISSEHLQALGVNWGLGEGDAANKALRLNNFNVGLPVDMPAINAGFHLARL 218

Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    +  L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +
Sbjct: 219 NGRLLDLELMALEQESEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 278

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTI 368
             + +  TP +L  GRI L ++   + P   +  GD     +   ++  T V +  G TI
Sbjct: 279 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 338

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +     +P+LS+IP+ G LFRN        E+ I  TP L+
Sbjct: 339 VLGGIFQQQKKNSDRQVPILSEIPVFGHLFRNHTQQHTRRELVIFITPTLI 389


>gi|70733953|ref|YP_257593.1| type IV pilus biogenesis protein PilQ [Pseudomonas fluorescens
           Pf-5]
 gi|68348252|gb|AAY95858.1| type IV pilus biogenesis protein PilQ [Pseudomonas fluorescens
           Pf-5]
          Length = 583

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 133/329 (40%), Gaps = 29/329 (8%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D+A L   L +        +  +  +V         + S    E + + +  + ++Q   
Sbjct: 257 DLAPLRRELLQVNYAKAADIAKLFQSVTRAEEKADERGSITVDERTNSII--AYQSQERL 314

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------------- 217
              ++++  L++    QV ++  I E   D  K +G +                      
Sbjct: 315 DELRRIVAQLDVP-VRQVMIEARIVEANVDYDKSLGVRWGGSVQNQGNWSASGVQNAASG 373

Query: 218 --SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
             SI    SG S S   D G    + G    +  + D    +  L A+E+      +++P
Sbjct: 374 SSSIGAPGSGGSNSPFVDLGASAHTSG--IGIAYITDNVLLDLELTAMEKTGNGEIVSQP 431

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +     ++A    G +  Y+  SSS GATSV+  +  + L  TP +    RI + ++  
Sbjct: 432 KVVTSDKETAKILKGTEIPYQEASSS-GATSVSFKEASLSLEVTPQITPDNRIIMEVKVT 490

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             EP       D+P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG
Sbjct: 491 KDEPDYLNKVQDVPPIKKNEVNAKVLVNDGATIVIGGVFSNTQSKVVDKVPFLGDVPYLG 550

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424
            LFR    + +++E+ +  TP ++   A+
Sbjct: 551 RLFRRDVVSEKKSELLVFLTPRIMNNQAI 579


>gi|30065325|ref|NP_839496.1| outer membrane porin HofQ [Shigella flexneri 2a str. 2457T]
 gi|56480325|ref|NP_709164.2| outer membrane porin HofQ [Shigella flexneri 2a str. 301]
 gi|30043587|gb|AAP19307.1| putative transport portein [Shigella flexneri 2a str. 2457T]
 gi|56383876|gb|AAN44871.2| putative transport portein [Shigella flexneri 2a str. 301]
 gi|281602739|gb|ADA75723.1| putative transport protein [Shigella flexneri 2002017]
 gi|313647313|gb|EFS11765.1| transport protein hofQ [Shigella flexneri 2a str. 2457T]
 gi|332749511|gb|EGJ79928.1| transport protein hofQ [Shigella flexneri K-671]
          Length = 412

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
             +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 ESEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|332090365|gb|EGI95463.1| transport protein hofQ [Shigella boydii 3594-74]
          Length = 385

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 133 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 191

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 192 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 250

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 251 GSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 310

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 311 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYER 370

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 371 RELVVFITPRLV 382


>gi|218691667|ref|YP_002399879.1| outer membrane porin HofQ [Escherichia coli ED1a]
 gi|218429231|emb|CAR10041.1| fimbrial transporter [Escherichia coli ED1a]
          Length = 412

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LF +     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFHHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|28870471|ref|NP_793090.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853718|gb|AAO56785.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 763

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 108/262 (41%), Gaps = 19/262 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             QV ++  I EV+      +G Q  +     +SG + +     G +     G  ++   
Sbjct: 489 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 548

Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
              F      + +  L ALE     + L+ P+L  ++ Q A    G        S +T  
Sbjct: 549 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 608

Query: 305 ------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRK 355
                 +SV     GV+L   P +   G + + IQ +VS+   G  + D+   P    R 
Sbjct: 609 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 668

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V   SG T++L GL+K D  +    +P L +IP L  LF NS  +++ TE+ +  T
Sbjct: 669 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 728

Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437
           P ++   +     +  D Y  +
Sbjct: 729 PRVI--TSSSQARQVTDDYRQQ 748


>gi|94959236|gb|ABF47508.1| GspD [Leptospira biflexa serovar Patoc]
          Length = 595

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 120/317 (37%), Gaps = 23/317 (7%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            V   QD  +AV   E+               KK++ +L+     QV L+V I E+    
Sbjct: 279 KVPGKQDKIKAVAHKESNSLIVTATPQEWEEIKKIIKILDTP-RKQVLLEVLIVELSSTD 337

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------RFSFETVL 260
           L   G        + G   +  A  GG     G   +V  +                 +L
Sbjct: 338 LNDFGIDWRYQELAYGQFNTGLAAQGGVIDKNGRPTNVNTLSGFSLGFIRRGGQQIIGIL 397

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------ATSVTTHDY 312
           +A         L+ P +  +  Q A    G     +T + + G          +      
Sbjct: 398 NANSTNENFNVLSAPQILTLDNQEAEINVGQDVPVRTQNRNAGLGGDNAVTVANFEYRPT 457

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           G+ L FTP +    RI L +  E+     +     G  P++  R   TT+ + +  TIV+
Sbjct: 458 GIKLKFTPHINKNNRITLDLYQEIKNVAGISSEATGGNPTFNKRDIKTTIVVDNIQTIVI 517

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD---L 427
            GLL +D Q+  + IP+L +IP+LG LFR +     +T + +  TP ++      D   +
Sbjct: 518 GGLLSNDKQKKVQKIPILGEIPLLGTLFRRTTNQNRKTNLMVFLTPHILDDRDKSDRMTI 577

Query: 428 SRPDDHYSVEDDAKAFF 444
            + ++   + D+ +   
Sbjct: 578 QKKNEQERMVDEREKKL 594


>gi|315633544|ref|ZP_07888834.1| type IV pilus secretin PilQ [Aggregatibacter segnis ATCC 33393]
 gi|315477586|gb|EFU68328.1| type IV pilus secretin PilQ [Aggregatibacter segnis ATCC 33393]
          Length = 474

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 124/318 (38%), Gaps = 23/318 (7%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
            +    T++   A ++  ++ ++      G + +   S    + S   L Q      AN 
Sbjct: 126 TSLATATIKLHFAKASEVMKSLTGG---SGSMLSPNGSITFDDRSNLLLIQDEPKSIAN- 181

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------------- 226
             KK++  L+   E Q+ ++  I  +  + LK +G +  I   +                
Sbjct: 182 -LKKLIKELDKPIE-QIAIEARIVTINAESLKDLGVRWGIFNPTENAHKIAGSLAANGFD 239

Query: 227 --SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
             +     +        G        ++    +  L ALER   +  +A P L   + +S
Sbjct: 240 NIANQLNVNLPTATTPAGSIALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKS 299

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IG 342
           AS   G +  Y  V+  +G  SV   +  + L  TP +    +I L +    + P   + 
Sbjct: 300 ASIKQGTELPYIMVNEKSGTQSVEFREAVLGLEVTPHISLDKQILLDLIVSQNAPGSRVA 359

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
              G++ S   ++ +T V    G TIVL G+  D I +  + +PLL  IP +  LF    
Sbjct: 360 YGLGEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKSLDKVPLLGDIPGIKHLFSKES 419

Query: 403 FNREETEIFIAATPFLVK 420
              ++ E+ I  TP +++
Sbjct: 420 DRHQKRELVIFVTPHILR 437


>gi|119470430|ref|ZP_01613158.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonadales bacterium TW-7]
 gi|119446355|gb|EAW27631.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonadales bacterium TW-7]
          Length = 697

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 105/259 (40%), Gaps = 24/259 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  +  VR ++ + +G +   +        S            
Sbjct: 438 RRMIETLDIP-VQQVVIESRMVTVRDNVTEDLGVRWGFSDQQGSDGISGSLEGAETISNG 496

Query: 230 --------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                      +      +      +  + +    +  L ALE       +A P + A +
Sbjct: 497 VIPDLTDRLNVNLPITNPAASIGLHIAKLANGTLIDLELSALEEENKGEIIASPRIIAAN 556

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEP 339
            Q A    G +  Y T S+S+GAT+V+     + L  TP +    ++ L   I  +    
Sbjct: 557 QQKARIEQGTEIPY-TESASSGATTVSFKKAVLSLEVTPHITPDNKVILDLIITQDTRGD 615

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           V+    G+  S   ++  T V + +G TIVL G+ +  I      +P+L  IP +G LF+
Sbjct: 616 VVQTGTGEAVSIDTQEIQTQVLVENGQTIVLGGIFQQQIINTTNKVPVLGDIPYVGRLFK 675

Query: 400 NSRFNREETEIFIAATPFL 418
           ++    E+ E+ I  TP +
Sbjct: 676 STSEFNEKRELLIFVTPKI 694


>gi|116328309|ref|YP_798029.1| Type II secretory pathway component, protein D [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331035|ref|YP_800753.1| Type II secretory pathway component, protein D [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121053|gb|ABJ79096.1| Type II secretory pathway component, protein D [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124724|gb|ABJ75995.1| Type II secretory pathway component, protein D [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 598

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 134/379 (35%), Gaps = 53/379 (13%)

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-------------SNIRVEMVS 142
             N I++   G  +  L +L    I  L++ L                    +   E ++
Sbjct: 190 NTNTIVLSGSGADINKLLVL----INELDLKLEEASPGAIASAGDVHIYTLEHSEAEKIA 245

Query: 143 DTVV-----------------LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
            T+V                 + G +    +  +AV   E+            +  +K++
Sbjct: 246 ATLVKLDNPVVQSEELSPEKKVPGQIPMKVEKIKAVGHKESNSVIVTATNAEWAEIRKII 305

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
            +L+ A   QV L+V I E+    L   G      G + G   S  +       S G   
Sbjct: 306 KVLDSA-RKQVLLEVLIVELTSSDLNDFGIDWRYKGEAFGQFNSGLSKEANIINSNGQIN 364

Query: 246 SVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                L  FS             +L A +       L+ P +  +  Q A  + G     
Sbjct: 365 PNVNTLSGFSLGFLKAGSEQIIGILSANQGNENFNVLSAPQVLTVDNQEAEISVGQDVPV 424

Query: 296 KTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
           +T S + G                 G+ L FTP V    RI L +  E+        AG 
Sbjct: 425 RTQSRNAGTGGTNAVTVDNYEYRPTGIKLKFTPHVNKNNRITLELFQEIKNIAEIALAGG 484

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P++  R+  T++ + +  +IV+ GL+ +D Q+    IP L  IP LG LF+ +    ++
Sbjct: 485 NPTFNRREIKTSISIENTQSIVIGGLISNDKQKRIIKIPFLGDIPYLGHLFKRTTEKIKK 544

Query: 408 TEIFIAATPFLVKPVAMRD 426
           T + +  TP ++      D
Sbjct: 545 TNLMVFITPHILDSRENAD 563


>gi|238927984|ref|ZP_04659744.1| Fimbrial type IV assembly protein pilQ precursor [Selenomonas
           flueggei ATCC 43531]
 gi|238883944|gb|EEQ47582.1| Fimbrial type IV assembly protein pilQ precursor [Selenomonas
           flueggei ATCC 43531]
          Length = 428

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 21/334 (6%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR--VEMVSDTVVLHGMVRTIQDSQRAV 161
              +++    +    D   L       +     R  V   +  +   G   +    +  V
Sbjct: 98  DAQRRVHTYTVR-YADPEELAHAANLSLTGEGKRAIVSKPNKDIGESGDQSSDVQRRVLV 156

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           + +   L   G    A  + +++++ L+ A   QV+L+  +  V +   K++G   S + 
Sbjct: 157 DTATNTLLFYGTESEAF-AVREIVSALDTA-PRQVSLEARVVAVSKRAAKELGVDWSWSS 214

Query: 222 ---------SSSGPSKSFAADFGGKFVSEGGDFSVK----GVLDRFSFETVLHALERATA 268
                     S+G       + G    S  G         G+   F +   + AL     
Sbjct: 215 LPQYPNVTRDSAGNWHVSGRNAGTAGRSAPGVIRFGRGPEGLPYEFYYSAAIRALITEGK 274

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPG 326
            + LA P +T + G+ A    G +     V++S   T   +   + G++L +TP V + G
Sbjct: 275 AKMLARPNVTTVQGREALINIGAEVPVPVVTTSNNVTTTGIEYREAGIILRYTPRVTADG 334

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I   + TEVS PV  V+      ++ R ADTTV L +G T+V+ GL+  D  +    IP
Sbjct: 335 NIVAHVHTEVSTPVF-VDDLKAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRTLAKIP 393

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  +P+LGA FR  R ++ E+E+ I  T  ++ 
Sbjct: 394 FLGDLPLLGAFFRTVRTSKNESELMIFLTAHVLD 427


>gi|320186741|gb|EFW61464.1| Type IV pilus biogenesis protein PilQ [Shigella flexneri CDC
           796-83]
          Length = 386

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|85711968|ref|ZP_01043022.1| possible Flp pilus assembly protein CpaC [Idiomarina baltica OS145]
 gi|85694154|gb|EAQ32098.1| possible Flp pilus assembly protein CpaC [Idiomarina baltica OS145]
          Length = 393

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 92/408 (22%), Positives = 164/408 (40%), Gaps = 38/408 (9%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
           +        + +++ + +  +L +      V+++D   A   + S  T+ + G   G  +
Sbjct: 14  VQTSNAVTTENLTLTVGQSELLTI-TPSTQVMIADEALAQAKLISQDTLLVRGLLPGTTD 72

Query: 99  VILIGHDGKQMLNLDI-LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           + LIG + K+++   +  + + I     T  R   +    V      + L G +      
Sbjct: 73  MWLIGPNDKRVVITIVHAVPKTIVTRLKTWARDYPNF--NVHEEGQHIELSGSLP----- 125

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
                  E    +     Y N   + V   ++      + LKVTI E+++  ++Q+G Q 
Sbjct: 126 -----ALERTALKKLIEPYPNIIDRTVSTRVD---HPMLRLKVTILEIKQQFVQQLGIQW 177

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                  GP+  +                  GV       + +  LE+  A + LA P L
Sbjct: 178 --DSQIDGPNWQWGRQ--------------GGVQWSPLLMSNIQLLEQQGAAKLLATPVL 221

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           T  SGQ ASF +GG+     V    G   V+  +YGV L   PTV +  +I  ++  EVS
Sbjct: 222 TTQSGQPASFLAGGEIPIPQVVGQ-GMQDVSFREYGVRLTIEPTVSAESKITAKLSAEVS 280

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                V    +P    R+ +  +    G T+VL+GLL  D  + + G+P L ++PI G +
Sbjct: 281 NIDPAVEVNGVPGILTRRTEAVLSSRHGETVVLSGLLSTDSSESEAGLPGLKQLPIAGEV 340

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           F++     + TE+ I  T  +V      D  R       +  AK ++ 
Sbjct: 341 FKHRGQRNQHTELLIFVTSEIV----AYDQQRHQLKQRHQQQAKEWYL 384


>gi|294142779|ref|YP_003558757.1| type IV pilus biogenesis protein PilQ [Shewanella violacea DSS12]
 gi|293329248|dbj|BAJ03979.1| type IV pilus biogenesis protein PilQ [Shewanella violacea DSS12]
          Length = 643

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 105/259 (40%), Gaps = 24/259 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229
           +++ +L+I    QV ++  +  V+ ++ + +G Q  IT        S             
Sbjct: 383 RLIEVLDIPI-RQVLIEARMVTVKDNVSEDLGIQWGITDQQGTRGTSGSIEGAESIAGGL 441

Query: 230 -------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                            +    F V  + D    +  L ALE+      +A P +   + 
Sbjct: 442 IPALADRLNVALPAPAGAASIAFHVARLADGTILDMELSALEQENKGEIIASPRIMTSNQ 501

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
           ++A    G Q  Y   SSS+GA +V+     + L  TP +    R+ L ++        V
Sbjct: 502 KAAYIEQGVQIPYVE-SSSSGAATVSFKKAVLSLRVTPQITPDNRVILDLEITQDSQGEV 560

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G+  S   ++  T V +  G TIVL G+ + ++      +P+L  IP LG LFR+
Sbjct: 561 VATPLGEAVSIDTQRIGTQVLVNHGETIVLGGIYQQNLISRVSKVPILGDIPFLGFLFRS 620

Query: 401 SRFNREETEIFIAATPFLV 419
           +    E  E+ I  TP ++
Sbjct: 621 TSDKNERQELLIFVTPKII 639


>gi|238899270|ref|YP_002924953.1| putative transport protein, possibly in biosynthesis of type IV
           pilin [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229467031|gb|ACQ68805.1| putative transport protein, possibly in biosynthesis of type IV
           pilin [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 419

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 7/232 (3%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            Q+ L   I  +  + L ++G +  +     G     K+F  +   K  +   +F V  +
Sbjct: 190 RQIELSAHIVTMSSENLYELGIRWGMNALEKGNPLGIKNFNINLPLKNTAIAANFQVASI 249

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R   +  L ALE+   +  +A P L     Q+AS   G    Y+ ++      S+   
Sbjct: 250 NSRL-LDLELSALEQENQVDIIASPRLITSHQQTASIKQGTDIPYQ-INGKKENVSIEFK 307

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368
           +  + +  TPT+L   +I L+++   + P + +  G+  +     ++  T + +  G TI
Sbjct: 308 EAVLGMEVTPTILGNDKIRLKLKISQNMPGMAIKRGNAETLAIDKQEITTQIIVKHGETI 367

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           VL G+ +       + +P    IP LGALFR     +   E+ I  TP L+ 
Sbjct: 368 VLGGIFQKKNNHRIDKVPGFGNIPFLGALFRQDVNQQRRRELVIFITPKLIH 419


>gi|183221062|ref|YP_001839058.1| general secretory pathway protein D [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911156|ref|YP_001962711.1| type II secretory pathway protein D [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775832|gb|ABZ94133.1| Type II secretory pathway component, protein D [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779484|gb|ABZ97782.1| General secretory pathway protein D [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 587

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 120/317 (37%), Gaps = 23/317 (7%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            V   QD  +AV   E+               KK++ +L+     QV L+V I E+    
Sbjct: 271 KVPGKQDKIKAVAHKESNSLIVTATPQEWEEIKKIIKILDTP-RKQVLLEVLIVELSSTD 329

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------RFSFETVL 260
           L   G        + G   +  A  GG     G   +V  +                 +L
Sbjct: 330 LNDFGIDWRYQELAYGQFNTGLAAQGGVIDKNGRPTNVNTLSGFSLGFIRRGGQQIIGIL 389

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------ATSVTTHDY 312
           +A         L+ P +  +  Q A    G     +T + + G          +      
Sbjct: 390 NANSTNENFNVLSAPQILTLDNQEAEINVGQDVPVRTQNRNAGLGGDNAVTVANFEYRPT 449

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           G+ L FTP +    RI L +  E+     +     G  P++  R   TT+ + +  TIV+
Sbjct: 450 GIKLKFTPHINKNNRITLDLYQEIKNVAGISSEATGGNPTFNKRDIKTTIVVDNIQTIVI 509

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD---L 427
            GLL +D Q+  + IP+L +IP+LG LFR +     +T + +  TP ++      D   +
Sbjct: 510 GGLLSNDKQKKVQKIPILGEIPLLGTLFRRTTNQNRKTNLMVFLTPHILDDRDKSDRMTI 569

Query: 428 SRPDDHYSVEDDAKAFF 444
            + ++   + D+ +   
Sbjct: 570 QKKNEQERMVDEREKKL 586


>gi|28872241|ref|NP_794860.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213969446|ref|ZP_03397583.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato T1]
 gi|28855495|gb|AAO58555.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213925817|gb|EEB59375.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato T1]
          Length = 718

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 117/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------- 224
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++S        
Sbjct: 444 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSRNGKWTTY 502

Query: 225 --------GPSKSFAADFGGKFVSEGGDFSVKGV-----LDRFSFETVLHALERATAIRT 271
                   G + +        FV  G   +  G+      +    +  L A+E+      
Sbjct: 503 GLDDNGDEGGNTNANLTSNIPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEI 562

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 563 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 621

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 622 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 681

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 682 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 714


>gi|167036119|ref|YP_001671350.1| type IV pilus secretin PilQ [Pseudomonas putida GB-1]
 gi|166862607|gb|ABZ01015.1| type IV pilus secretin PilQ [Pseudomonas putida GB-1]
          Length = 420

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 107/245 (43%), Gaps = 6/245 (2%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFV 239
           ++++  L++    QV ++  I E   D  K +G +    + G+   P K    D G    
Sbjct: 176 RQLVTQLDVP-VRQVAIEARIVEANVDYEKSLGVRWGGPLYGAQLRPGKELFVDLG--VE 232

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             GG   +  +      +  L A+E++     +++P +     ++A    G +  Y+  S
Sbjct: 233 RAGGSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETS 292

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            S GATSV+  +  + L  TP +    ++ + ++    EP       ++P  R  + +  
Sbjct: 293 QS-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEVNAK 351

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V +  G TIV+ G+       + + +P    +P +G LFR      +++E+ +  TP ++
Sbjct: 352 VRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIM 411

Query: 420 KPVAM 424
              A+
Sbjct: 412 SDQAI 416


>gi|213970091|ref|ZP_03398223.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tomato T1]
 gi|301381448|ref|ZP_07229866.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061436|ref|ZP_07252977.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato K40]
 gi|302133002|ref|ZP_07258992.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213925195|gb|EEB58758.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tomato T1]
          Length = 775

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 108/262 (41%), Gaps = 19/262 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             QV ++  I EV+      +G Q  +     +SG + +     G +     G  ++   
Sbjct: 501 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 560

Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
              F      + +  L ALE     + L+ P+L  ++ Q A    G        S +T  
Sbjct: 561 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 620

Query: 305 ------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRK 355
                 +SV     GV+L   P +   G + + IQ +VS+   G  + D+   P    R 
Sbjct: 621 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 680

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V   SG T++L GL+K D  +    +P L +IP L  LF NS  +++ TE+ +  T
Sbjct: 681 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 740

Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437
           P ++   +     +  D Y  +
Sbjct: 741 PRVI--TSSSQARQVTDDYRQQ 760


>gi|332750832|gb|EGJ81239.1| transport protein hofQ [Shigella flexneri 2747-71]
 gi|332763627|gb|EGJ93866.1| protein involved in utilization of DNA as a carbon source [Shigella
           flexneri 2930-71]
 gi|332997370|gb|EGK16986.1| transport protein hofQ [Shigella flexneri K-218]
 gi|333012492|gb|EGK31873.1| transport protein hofQ [Shigella flexneri K-304]
          Length = 386

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
             +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 252 ESEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 372 RELVVFITPRLV 383


>gi|83749638|ref|ZP_00946621.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551]
 gi|83723699|gb|EAP70894.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551]
          Length = 401

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 157/335 (46%), Gaps = 33/335 (9%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
           S A     +E+ A   N +   + +  ++++ + K  ++Q+P  V++  V +P     ++
Sbjct: 73  SAATAEASRESAAKGPNCT-GAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAML 131

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEM 140
            SP+T+YL G+ VG  N+I+ G  G   + +D+ +  D   L+ TLR  +  + N++V  
Sbjct: 132 VSPQTLYLLGQEVGTTNMIVQGRSGSCSV-IDVSVGADPGGLQSTLRTLMPGAKNVQVSA 190

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYAN 178
            +D++VL G V     +Q+ ++++  F+                         G    A 
Sbjct: 191 AADSLVLGGSVSDSVQAQKVLDIANAFVMHQTRGPAQGDQGGAAQGGGAMQGLGATPGAP 250

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
             S +++N++ +    QV L+V +AEV + ++ Q+G   ++     G   S+       F
Sbjct: 251 PRSPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNVN----GAFGSWTFGALANF 306

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           +S   D       +    +  L A +    ++ LAEP+L AISGQ ASF +GG+      
Sbjct: 307 LSGSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVS 366

Query: 299 SS--STGATSVTTHD--YGVVLHFTPTVLSPGRIG 329
               + G  ++   +  +GV L FTPTV+  GRI 
Sbjct: 367 QGAATNGVANIILXEETFGVGLRFTPTVMEKGRIT 401


>gi|251788920|ref|YP_003003641.1| general secretion pathway protein D [Dickeya zeae Ech1591]
 gi|247537541|gb|ACT06162.1| general secretion pathway protein D [Dickeya zeae Ech1591]
          Length = 716

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 135/365 (36%), Gaps = 46/365 (12%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
                T+V+ G   T++   +   L  T      R+       ++V+N L+I    QV +
Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 402

Query: 199 KVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFA--------------ADFGGKF 238
           +  IAE++      +G Q +      I   +S  S +                      +
Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMIQFPNSNASNNIPISTAMIGTDQFRSDGTLTTAY 462

Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            +  G F+ +     R ++  +L AL        LA P++  +    A+F  G +    T
Sbjct: 463 ANALGSFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLT 522

Query: 298 VSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDM 348
              +T         +V     G+ L   P +     + L+I+ EVS    G    N+   
Sbjct: 523 GQQTTMGSGSNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNSSTNSSLG 582

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            ++  R  +  V + +G T+V+ GLL     +    +PLL  IP LG+LFR+   +  + 
Sbjct: 583 VTFNTRTVNNAVMVTNGETVVVGGLLDKSTIETNNKVPLLGDIPWLGSLFRSKSQSMSKR 642

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
            + +   P +++             Y     +K   FN   +    +  S ++    + +
Sbjct: 643 NLMLFLRPTIIRDP---------QQYQQASISKYNSFNNEQQQQRGQGNSVLDNNTLRLS 693

Query: 469 IGFIY 473
            G  Y
Sbjct: 694 GGNTY 698


>gi|309703802|emb|CBJ03143.1| protein transport protein [Escherichia coli ETEC H10407]
          Length = 412

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP+ G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFNTPRLV 409


>gi|91200092|emb|CAJ73135.1| similar to general secretion pathway protein D [Candidatus Kuenenia
           stuttgartiensis]
          Length = 668

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/281 (24%), Positives = 120/281 (42%), Gaps = 11/281 (3%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           R I +S + +  +ET             S K ++  ++ A   QV ++V I EV R+   
Sbjct: 374 RDIVESMKVLADTETNSVIMKTFPSDYKSIKAIIEAID-ATPQQVFIEVLIVEVTRNDTL 432

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
             G +   +G  S        D      +    F+      + SFE ++  L  ++  + 
Sbjct: 433 DYGTEWLWSG--SNLQVYGVGDIARAAGNAAVQFT--NTFAKGSFEILIDILATSSNAKI 488

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFTPTVLSPG 326
           L+ P +     Q AS   G +    T S     T++T       D G++L  TP +   G
Sbjct: 489 LSAPHILVRDEQPASIQVGEEVPILTSSGQQTGTTITFEQVQYRDTGIILTVTPHIAENG 548

Query: 327 RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            I L +  EVS   +     +  P++  R+  T++ + SG TI L G+++   ++  + I
Sbjct: 549 LITLEVNQEVSNAKLTDTGVEKSPTFSTRQVQTSLVIKSGHTIGLGGIIEQKNEKEVKKI 608

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           PLL  IP LG LF+ +    + TE+ +  TP++       D
Sbjct: 609 PLLGDIPYLGNLFKATSLIDKRTELIMLITPYIANNAEDAD 649


>gi|330981434|gb|EGH79537.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 589

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 103/262 (39%), Gaps = 19/262 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             QV ++  I EV+      +G Q  +     +SG + +     G +     G  ++   
Sbjct: 315 PLQVQIETRILEVQLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 374

Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
              F      + +  L ALE     + L+ P+L  ++ Q A    G        S +T  
Sbjct: 375 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 434

Query: 305 T------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRK 355
                  SV     GV+L   P +   G + + IQ +VS      N   A   P    R 
Sbjct: 435 NAGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNANNSDANGNPRISTRS 494

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V   SG T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  T
Sbjct: 495 VATQVAAQSGQTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLIT 554

Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437
           P ++   +     +  D Y  +
Sbjct: 555 PRVI--TSSSQARQVTDDYRQQ 574


>gi|167625988|ref|YP_001676282.1| type IV pilus secretin PilQ [Shewanella halifaxensis HAW-EB4]
 gi|167356010|gb|ABZ78623.1| type IV pilus secretin PilQ [Shewanella halifaxensis HAW-EB4]
          Length = 688

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 125/298 (41%), Gaps = 26/298 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204
           +L G   ++  ++ +V + E   +   ++      +  +++ +L+I  + QV ++  +  
Sbjct: 389 LLKGEDSSLLTARGSVAVDERTNTLLVKDTEETLENVHRLIEVLDIPIK-QVLIEARMVT 447

Query: 205 VRRDILKQIGFQHSITGSSS--GPSKSF--AADFGGKFVSEGGD---------------- 244
           V+ D+ + +G +  +T      G S S   A D     V    D                
Sbjct: 448 VKDDVSEDLGVRWGVTDQQGDKGTSGSLEGAGDIANGIVPSLSDRLNVNLPAAVANPTSI 507

Query: 245 -FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F V  + D    +  L ALE+      +A P +T  + ++A    G +  Y   SSS G
Sbjct: 508 AFHVAKLADGTVLDLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVEASSS-G 566

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVE 361
           AT+VT     + L  TP +    R+ L ++         V+   G   S   ++  T V 
Sbjct: 567 ATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGQAVSIDTQRIGTQVL 626

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +  G TIVL G+ +  +      +P+L  IP LG +FRNS    E  E+ I  TP +V
Sbjct: 627 VDHGETIVLGGIYQQQLITKVSKVPILGDIPYLGFMFRNSSDKNERQELLIFVTPKIV 684


>gi|127511146|ref|YP_001092343.1| type IV pilus secretin PilQ [Shewanella loihica PV-4]
 gi|126636441|gb|ABO22084.1| type IV pilus secretin PilQ [Shewanella loihica PV-4]
          Length = 683

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/260 (25%), Positives = 111/260 (42%), Gaps = 25/260 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--GPSKSF--AADFGGKF 238
           +++ +L+I    QV ++  +  V+ D+ + +G +  IT      G S S   A D     
Sbjct: 422 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIKWGITDQQGSKGTSGSLEGANDIANGV 480

Query: 239 VSEGGD-----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           V + GD                 F V  + D    +  L ALE+ +    +A P +T  +
Sbjct: 481 VPDIGDRLNVNLPAAVANPTSIAFHVAKLADGTLLDLELSALEQESKGEIIASPRITTSN 540

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y   S+S+GA +V      + L  TP +    R+ L ++        
Sbjct: 541 QKAAYIEQGVEIPYVE-SASSGAATVQFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 599

Query: 342 GVNA--GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            V+   G   S   ++  T V +  G TIVL G+ +  +      +P+L  IP LG LFR
Sbjct: 600 TVDTPLGQAVSIDTQRIGTQVLVDHGETIVLGGIYQQQLINRVSKVPVLGDIPFLGYLFR 659

Query: 400 NSRFNREETEIFIAATPFLV 419
           N+    E  E+ I  TP ++
Sbjct: 660 NTTDKNERQELLIFVTPKII 679


>gi|330969406|gb|EGH69472.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 325

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/277 (27%), Positives = 123/277 (44%), Gaps = 20/277 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVS 240
             QV   +   EV R  LK+        GSS+              +             
Sbjct: 40  PSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPL 99

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              +F++           +++A+E +    TLA P+L A++GQSASF +GG+      + 
Sbjct: 100 NNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNG 159

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKA 356
                S+   ++GV L  TPTV+   RI L++  EVSE      I +    +P+  +R+ 
Sbjct: 160 EGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRT 219

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT++ L  G + V++GL+        +  P L  IPILGA FR+S+  R+E E+ +  TP
Sbjct: 220 DTSIALADGESFVISGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTP 279

Query: 417 FLVKPVA--MRDLSRPDDHYSV--EDDAKAFFFNRVN 449
            LV+P+A   R  S P +          + +F    +
Sbjct: 280 HLVQPLAANARLPSLPGEGLRTYDPSFPRLYFLENGD 316


>gi|153871180|ref|ZP_02000417.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           PS]
 gi|152072356|gb|EDN69585.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           PS]
          Length = 442

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/313 (19%), Positives = 114/313 (36%), Gaps = 35/313 (11%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G   + +          T             + + V+  L+I    QV ++  IAE+  D
Sbjct: 93  GKSPSPEIKTNIQADESTNSLVITATPKVQQNLQTVIRQLDIR-RAQVLVEAVIAEISTD 151

Query: 209 ILKQIGFQHSITGS----------------------SSGPSKSFAADFGGKFVSEGGDFS 246
             +++G Q  + G+                      S+G   +  +      +  G    
Sbjct: 152 TARELGVQWLLYGNKGTAPFGLSNFDNSGTRIADLASAGYLANNNSSTSLPNIGAGAFLG 211

Query: 247 VKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA- 304
           +    + F +F  +L AL   T    L+ P+L  +  Q A    G    + T   +    
Sbjct: 212 LGRFNNSFLNFGVLLRALASDTNTNVLSTPSLLTLDNQEAEIVVGQNVPFVTGQYTNTGT 271

Query: 305 ----------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
                      ++   D G+ L   P +     + L I+ EVS       A        R
Sbjct: 272 SGGGGVTNPFQTIQREDIGIKLRVKPQINEGNAVKLEIEQEVSSLSRSSQATTDIVTNKR 331

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              TTV +  G  +VL GL+ +D+QQ  + +P L  +PI+G LFR+    + +  + +  
Sbjct: 332 TIKTTVIVEDGNMVVLGGLIDEDLQQTAQKVPGLGDLPIIGHLFRSRSTQKIKRNLMVFL 391

Query: 415 TPFLVKPVAMRDL 427
            P +++  A  ++
Sbjct: 392 HPVIIRDAASENI 404


>gi|157372838|ref|YP_001480827.1| putative outer membrane porin HofQ [Serratia proteamaculans 568]
 gi|157324602|gb|ABV43699.1| type IV pilus secretin PilQ [Serratia proteamaculans 568]
          Length = 413

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 108/232 (46%), Gaps = 7/232 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +  + L+++G +  +       S      F      +  +    F +  +
Sbjct: 182 QVQLATHIVTINSESLRELGVRWGLAPDDRPASSWQMDGFNVGLPLERSAVSAGFHLARI 241

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R   +  L ALE+   +  +A P L   + Q+AS   G +  Y+  S S+GATS+   
Sbjct: 242 GGRL-LDLELMALEQENRVEIIASPRLLTANLQTASIKQGTEIPYEVNSGSSGATSMEFK 300

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  GRI L +Q   + P   ++  AG+  +   ++  T V +  G T+
Sbjct: 301 EAVLGMEVTPKILPNGRITLTLQISQNMPGRSISRAAGETLAIDKQEIKTQVTVKDGETV 360

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           VL G+ +    +  + +P +S +P+LG+LF+ S    +  E+ I  TP L+K
Sbjct: 361 VLGGVFQRHSAEGADKVPGISDVPLLGSLFKQSSKQHKRRELVIFITPTLIK 412


>gi|157960066|ref|YP_001500100.1| type IV pilus secretin PilQ [Shewanella pealeana ATCC 700345]
 gi|157845066|gb|ABV85565.1| type IV pilus secretin PilQ [Shewanella pealeana ATCC 700345]
          Length = 688

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 125/298 (41%), Gaps = 26/298 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204
           +L G   ++  S+ +V + E   +   ++      +  +++ +L+I  + QV ++  +  
Sbjct: 389 LLKGEDSSLLTSRGSVAVDERTNTLLVKDTEETLENIHRLIEVLDIPIK-QVLIEARMVT 447

Query: 205 VRRDILKQIGFQHSITGSSS--GPSKSF--AADFGGKFVSEGGD---------------- 244
           V+ D+ + +G +  +T      G S S   A D     V    D                
Sbjct: 448 VKDDVSEDLGVRWGVTDQQGDKGTSGSLEGAGDIANGIVPSLSDRLNVNLPAAVANPTSI 507

Query: 245 -FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F V  + D    +  L ALE+      +A P +T  + ++A    G +  Y   SSS G
Sbjct: 508 AFHVAKLADGTVLDLELSALEQENKGEIIASPRITTSNQKAAFIEQGVEIPYVEASSS-G 566

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVE 361
           AT+VT     + L  TP +    R+ L ++         V+   G   S   ++  T V 
Sbjct: 567 ATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGQAVSIDTQRIGTQVL 626

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +  G TIVL G+ +  +      +P+L  IP LG +FR++    E  E+ I  TP +V
Sbjct: 627 VDHGETIVLGGIYQQQLISRVSKVPILGDIPYLGFMFRSTSDKNERQELLIFVTPKIV 684


>gi|302184967|ref|ZP_07261640.1| general secretion pathway protein D [Pseudomonas syringae pv.
           syringae 642]
          Length = 775

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 102/262 (38%), Gaps = 19/262 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             QV ++  I EV+      +G Q  +     +SG + +     G +     G  ++   
Sbjct: 501 PLQVQIETRILEVQLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 560

Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
              F      + +  L ALE     + L+ P+L  ++ Q A    G        S +T  
Sbjct: 561 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 620

Query: 305 T------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRK 355
                  SV     GV+L   P +   G + + IQ +VS         D    P    R 
Sbjct: 621 NAGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTTSGTNDANGNPRISTRS 680

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V   SG T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  T
Sbjct: 681 VATQVAAQSGQTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLIT 740

Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437
           P ++   +     +  D Y  +
Sbjct: 741 PRVI--TSSSQARQVTDDYRQQ 760


>gi|170724709|ref|YP_001758735.1| type IV pilus secretin PilQ [Shewanella woodyi ATCC 51908]
 gi|169810056|gb|ACA84640.1| type IV pilus secretin PilQ [Shewanella woodyi ATCC 51908]
          Length = 682

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 110/259 (42%), Gaps = 24/259 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--GPSKSFAA-------- 232
           +++ +L+I    QV ++  +  V+ D+ + +G +  I+      G S S           
Sbjct: 422 RLIKILDIPI-RQVLIEARMVTVKDDVSEDLGIKWGISDKQGSKGTSGSIGGAQDIANGI 480

Query: 233 ----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                     +F     +    F V  + D    +  L ALE+      +A P +T  + 
Sbjct: 481 IPSVNDRLNVNFPAPEAAASIAFHVAKLADGTILDMELSALEQENKGEIIASPRITTSNQ 540

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
           ++A    G +  Y   SSS GA +V+     + L  TP +    R+ L ++        V
Sbjct: 541 KAAYIEQGVEIPYVEASSS-GAATVSFKKAVLSLRVTPQITPDNRVILDLEISQDSQGKV 599

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ S   ++  T V +  G TIVL G+ + ++      +P+L  IP +G LFR+
Sbjct: 600 VATPLGEVVSIDTQRIGTQVLVDHGETIVLGGIYQQNLISRVSKVPVLGDIPFVGFLFRS 659

Query: 401 SRFNREETEIFIAATPFLV 419
           +    E  E+ I  TP ++
Sbjct: 660 TSDKNERQELLIFVTPKII 678


>gi|26991756|ref|NP_747181.1| type IV pilus secretin PilQ [Pseudomonas putida KT2440]
 gi|24986864|gb|AAN70645.1|AE016708_6 type IV pili biogenesis protein PilQ [Pseudomonas putida KT2440]
          Length = 420

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 106/248 (42%), Gaps = 6/248 (2%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGG 236
           +  ++++  L++    QV ++  I E   D  K +G +    + G    P K    D G 
Sbjct: 173 AEMRQLVAQLDVP-VRQVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLG- 230

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                G    +  +      +  L A+E++     +++P +     ++A    G +  Y+
Sbjct: 231 -LERAGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQ 289

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
             S S GATSV+  +  + L  TP +    ++ + ++    EP       ++P  R  + 
Sbjct: 290 ETSQS-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEV 348

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +  V +  G TIV+ G+       + + +P    +P +G LFR      +++E+ +  TP
Sbjct: 349 NAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 408

Query: 417 FLVKPVAM 424
            ++   A+
Sbjct: 409 RIMSDQAI 416


>gi|332163311|ref|YP_004299888.1| putative outer membrane porin HofQ [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667541|gb|ADZ44185.1| putative outer membrane porin HofQ [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861918|emb|CBX72088.1| protein transport protein hofQ [Yersinia enterocolitica W22703]
          Length = 439

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L+++G +  +  +    S    +F  +      +    F+V  +
Sbjct: 208 QQVQLAAHIVTMSRENLQELGVRWGMGDTKPTSSLRMSNFNVNLPLPNSAISAGFNVARI 267

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +   LE+   I  +A P L     Q+AS   G    Y       GAT++   
Sbjct: 268 GGRLLELELSA-LEQENQIDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFK 326

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +  GD  +     ++  T + +  G TI
Sbjct: 327 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETI 386

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +         +P+L+ IP LG LF+     +   E+ I  TP L+
Sbjct: 387 VLGGIFQQKSSHGLNKVPILADIPWLGGLFKQDARQQSRRELVIFITPRLI 437


>gi|332994686|gb|AEF04741.1| putative type IV pilus biogenesis protein PilQ [Alteromonas sp.
           SN2]
          Length = 586

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 118/294 (40%), Gaps = 26/294 (8%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G + + + +    E + T L +        +  +K+++ L+I    QV ++  +  V  
Sbjct: 293 EGGILSERGTVTVDERTNTMLIRDTLPSIDEA--RKMIDALDIP-VKQVLIESRMVTVLD 349

Query: 208 DILKQIGFQHSITGSSSGPSKS--------------------FAADFGGKFVSEGGDFSV 247
           ++ +++G +  ++   S    S                       +      +    F +
Sbjct: 350 NVDEELGVRWGLSDRESDSGVSGSIEGAETIAGGSIPSIDDRLNVNLPVSSAAGTIGFQI 409

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
             ++D    +  L ALE       +A P +T  + Q A    G +  Y   +SS GATSV
Sbjct: 410 ASLVDGTILDLELSALESENKGEIIASPRITVANQQEAYIEQGTEIPYVQATSS-GATSV 468

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                 + L  TP +    RI L   +  +     +  + GD  +   ++  T V + +G
Sbjct: 469 EFKKAVLSLRVTPQITPDNRIILDLVVTQDTRGETVSTSTGDAVAIDTQEIKTQVLVENG 528

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            TIVL G+ +         +PL   +P LG LFRN+   +E+ E+ I  TP ++
Sbjct: 529 ETIVLGGIFQQTSTDSVSKVPLFGDLPFLGVLFRNTSEFQEKRELLIFVTPKII 582


>gi|323142233|ref|ZP_08077067.1| bacterial type II/III secretion system short domain protein
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413296|gb|EFY04181.1| bacterial type II/III secretion system short domain protein
           [Phascolarctobacterium sp. YIT 12067]
          Length = 364

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 120/248 (48%), Gaps = 10/248 (4%)

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
           + +++  ++++  L+IA   QVTL+  I  V R+  K +G +       + P ++   + 
Sbjct: 97  EQSHARLRQLLPKLDIAT-RQVTLEAKIIAVSREDSKNMGVRW---DWDTIPQRAQETNN 152

Query: 235 GGKFVSE-GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           G    S   G F        F F   L+AL  +   R LA P +  I G+ AS   G   
Sbjct: 153 GDSDSSNYDGSFKFWRGF-AFRFNATLNALINSGKARILATPRIITIPGKEASIFIGDHI 211

Query: 294 LYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAGDMPS 350
             +T    +    T+    D G+ L + P +   G+ +   + TEVS PV+ ++      
Sbjct: 212 PVQTEKHDSSGSYTATEYLDAGIKLQYAPIISEDGKMVTASVHTEVSTPVL-ISELKNYR 270

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R ADT V + SG T+V+ GL+ ++ Q+  + +P LSKIP+LG LF+N   +  +TE+
Sbjct: 271 ITSRTADTNVRMYSGETLVIGGLISEEQQRTMQKVPFLSKIPLLGELFKNRSRSHNKTEV 330

Query: 411 FIAATPFL 418
            +  TP +
Sbjct: 331 LLLLTPHI 338


>gi|301382657|ref|ZP_07231075.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060641|ref|ZP_07252182.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato K40]
 gi|302130950|ref|ZP_07256940.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|331016027|gb|EGH96083.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 701

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 117/273 (42%), Gaps = 23/273 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------- 224
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++S        
Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSRNGKWTTY 485

Query: 225 --------GPSKSFAADFGGKFVSEGGDFSVKGV-----LDRFSFETVLHALERATAIRT 271
                   G + +        FV  G   +  G+      +    +  L A+E+      
Sbjct: 486 GLDDNGDEGGNTNANLTSNIPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEI 545

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP +    RI + 
Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +
Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697


>gi|87122896|ref|ZP_01078763.1| type IV pili biogenesis protein PilQ [Marinomonas sp. MED121]
 gi|86161822|gb|EAQ63120.1| type IV pili biogenesis protein PilQ [Marinomonas sp. MED121]
          Length = 390

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 11/230 (4%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKFVSEGGDFSVKGV 250
            Q+ +   IA+V+  +  QIG +    G  +G + S A+   D      + G  F+V   
Sbjct: 165 RQIEISARIAQVQNAVESQIGVEW--QGQLAGDTLSTASGLVDLATTSSTSGLSFAVAKS 222

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            D  +    L  LE       ++EP +    GQ A   SG +  Y+T  S    T V   
Sbjct: 223 DDLLALN--LSFLESNGLANIVSEPKIVTAEGQMAKIESGTEVPYQT--SDDEGTHVEFK 278

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
             G+ L   P V    ++ L ++       +G     +PS    + +T V + +  T+VL
Sbjct: 279 QAGLTLEVIPFVKQGDKVQLSLKIYQD--AVGEMYNGVPSIETNRINTQVLVGNQETLVL 336

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            G+ +D++ +    +P    +P +GALFR+    +E+ E+ +  TP L++
Sbjct: 337 GGIYRDEVWESTSKVPFFGDLPFVGALFRHQAQRQEKVELLVFITPKLLQ 386


>gi|109896995|ref|YP_660250.1| type IV pilus secretin PilQ [Pseudoalteromonas atlantica T6c]
 gi|109699276|gb|ABG39196.1| type IV pilus secretin PilQ [Pseudoalteromonas atlantica T6c]
          Length = 580

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/323 (21%), Positives = 133/323 (41%), Gaps = 27/323 (8%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-QYAN 178
           +A L   +   +  +  + + V+   +L     +I   + +V + E   +   R+ Q + 
Sbjct: 255 VAQLAPLISANLQINYAKAKEVAG--ILKNTDSSILSPRGSVAVDERTNTVLLRDTQTSI 312

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------- 229
             ++K++  L+I    QV ++  +  VR +  +Q+G +   + +S   + S         
Sbjct: 313 DEARKLIRALDIP-VKQVLIESRMVTVRDNAGEQLGVRWGFSNNSGDTATSGSIEGADTL 371

Query: 230 -----------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                         +      +      V  ++D    +  L ALE       +A P +T
Sbjct: 372 SSGVVPSIDNRLNVNLPVTNPAGSIGIQVARLVDGTILDLELSALESENKGEVIASPRIT 431

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEV 336
             + + A    G +  Y   S+S+GATSV      + L  TP +    RI L   +  + 
Sbjct: 432 VANQREAYIEQGTEIPY-VQSTSSGATSVEFKKAVLSLKVTPHITPDHRIILDLVVTQDT 490

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
               +  + G   +   ++  T V + +G TIVL G+ +         +PLL  IP+LG 
Sbjct: 491 RGDTVNTSTGLAVAIDTQEISTQVLVNNGETIVLGGIFQQTTTDDVSQVPLLGDIPVLGH 550

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LF+N++   E+ E+ I  TP ++
Sbjct: 551 LFKNTQTVNEKRELLIFVTPKIL 573


>gi|260886221|ref|ZP_05897484.1| putative secretin and TonB short domain protein [Selenomonas
           sputigena ATCC 35185]
 gi|260863940|gb|EEX78440.1| putative secretin and TonB short domain protein [Selenomonas
           sputigena ATCC 35185]
          Length = 462

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 185/452 (40%), Gaps = 50/452 (11%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M    R     ++ +   + P+ A    ++  +A V  +    I +   + + L+  +  
Sbjct: 16  MGISPRVGAFFLAAWFAGALPAAASPLTLEVVDADVTALL-TSIARLSGLDLILDDSVKG 74

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDIL 115
           ++ + ++DV   +P +A         + L  +  G A      V+L+    +      + 
Sbjct: 75  RISLSLKDV---EPEEA---------LMLISRAKGLAVQHEGKVLLVRAAKEAAPFYRMH 122

Query: 116 I----ERDIAHLEMTLRRFIADSNIRV---EMVSDTVVLH--GMVRTIQDS--QRAVELS 164
           +      D+      ++  + ++ I        +    +   G+ RT +     RA    
Sbjct: 123 VLPVHHADLDTAFAAVKLSLGEAGISAIDENKKNGKEDISEQGLYRTGERLLIDRATNAL 182

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
             + ++        + ++ V++ L++  E QV+L+  +  + ++  K++G     +    
Sbjct: 183 LFYGTEE-----EKARAEAVLHSLDVPTE-QVSLEARVVALEKNAAKELGVDWDWSPLPI 236

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAE 274
            P  +  +  G +    G D  V GV+            F +   + AL        LA 
Sbjct: 237 DPHGTSKS--GAEGSRRGIDGEVPGVIRFGRTPEGKPYEFYYRAKIAALITDGKANVLAR 294

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRI 332
           P +T + G+ A    GG        ++    + +      G++L +TP +   G I  R+
Sbjct: 295 PNITTLQGREAVINIGGSVPVPETQTTNSTVTTSITYKKAGIILRYTPRIHENGEITARV 354

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            TEVS PV  V+A     ++ R ADTTV L  G T+V+ GL+  +  ++   +PLL  IP
Sbjct: 355 HTEVSSPVY-VDALKAYKFQERSADTTVRLKDGETMVIGGLIGSEESRVFAKVPLLGDIP 413

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           ILG  F++ R  + ++EI I  T  +++  + 
Sbjct: 414 ILGTFFKSVRRTKTDSEIMIFLTAHILRDTSP 445


>gi|222056148|ref|YP_002538510.1| type IV pilus secretin PilQ [Geobacter sp. FRC-32]
 gi|221565437|gb|ACM21409.1| type IV pilus secretin PilQ [Geobacter sp. FRC-32]
          Length = 911

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 20/243 (8%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSIT--------------GSSSGPSKSFAADFGG 236
             E QV ++  I E     ++ +G Q  I                +  G   + A   G 
Sbjct: 674 TPEKQVMIEARIVEASTSFVRDLGVQWGIHYIDGSASVAGISRLDTGFGGQVAIAPTSGT 733

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                    S   +      +  L A   A  I+ ++ P +  ++ + A  + G    Y+
Sbjct: 734 SGPGAAVGMSFGKLASNIQLDMRLSAAVTADQIKIMSTPRVVTLNNKPAKISQGASIPYQ 793

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           T S+    T     +  + L  TP + S G IG++I+   +        G  P    ++A
Sbjct: 794 TTSAE--GTKTEFVEAALTLEVTPHITSDGSIGMKIKASNN----SAGTGSPPPINKKEA 847

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T + + +G T V+ G+  D   +  +G+P L  IP+LG LF+++  N+ + E+ I  TP
Sbjct: 848 TTELLIKNGETTVIGGIYVDSDTESDKGVPFLQDIPLLGWLFKSNTKNKSKNELLIFITP 907

Query: 417 FLV 419
            +V
Sbjct: 908 KIV 910


>gi|109896562|ref|YP_659817.1| general secretion pathway protein D [Pseudoalteromonas atlantica
           T6c]
 gi|109698843|gb|ABG38763.1| general secretion pathway protein D [Pseudoalteromonas atlantica
           T6c]
          Length = 689

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 125/345 (36%), Gaps = 50/345 (14%)

Query: 149 GMVRTIQDSQRAVELSETFLSQS---GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           G  ++   + R + +     S +           S + V+  L+I    QV ++  I EV
Sbjct: 303 GAAKSTSKAARDISIEAHEDSNALVITAQPDMMRSLEDVIRQLDIR-RAQVQVEAIIVEV 361

Query: 206 RRDILKQIGFQH-----SITGSSSGPSKSFAA---------------------------- 232
                  +G Q           S+G      +                            
Sbjct: 362 FEGDGTTVGVQWASEKYGAQQFSNGNVVGIGSLAVAAEQAEDTTTTTVGFDDDGDPYSFD 421

Query: 233 -----DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                D+       GG         +  +  VL A+   T    L+ P LT +  + A F
Sbjct: 422 ETTEGDYTALASLLGGVNGFLVGAVKDGWGAVLQAVSTDTNSNVLSTPHLTTLDNEEAFF 481

Query: 288 TSGGQHLYKTVSSSTGATS-----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
             G +    T S++    +     V   + G+ L  TP +     + L I+ EVS     
Sbjct: 482 IVGQEVPIITGSTTGSNNTNPFQSVERQEIGIKLKVTPQINEGNAVQLLIEQEVSSISGA 541

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +   +     R+  TTV +  GGTIVL GL+ DD+Q+    +P+L  IP LG LF+++ 
Sbjct: 542 TSVDIL--INKREIKTTVIVDDGGTIVLGGLIDDDVQESVSKVPILGDIPYLGNLFKSTT 599

Query: 403 FNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFN 446
            ++ +  + +   P +++  V   D+SR   +Y   +  K     
Sbjct: 600 TSKSKRNLMVFIRPTIIRDGVTASDISRKKYNYIRAEQLKRQSEG 644


>gi|330810080|ref|YP_004354542.1| type II secretion pathway protein D precursor [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327378188|gb|AEA69538.1| putative type II secretion pathway protein D precursor [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 786

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 77/333 (23%), Positives = 133/333 (39%), Gaps = 33/333 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++LL+     QV ++  I EV  D   + G Q  
Sbjct: 432 QADATTNTLLISAPDPLYRN--LREVIDLLDQR-RAQVVIESLIVEVGEDDASEFGVQWQ 488

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSV------------------KGVLDRFSFETVL 260
            TG+  G       + GG  ++  G  S+                   G+      + + 
Sbjct: 489 -TGNLGGSGVIGGVNLGGTGLNLNGKTSIDVLPQGLNLGVVNGTVDIPGIGKILDLKVLA 547

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDY 312
            AL+       L+ P L  +  ++AS   G    + + S  TG          +VT  + 
Sbjct: 548 RALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEV 607

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G+ L+  P +   G + L I  EVS      ++        R  DT++ L  G  +VL G
Sbjct: 608 GLKLNVRPQISEGGTVKLDIYQEVSSVDNRASSTTGIVTNKRAIDTSILLDDGQIMVLGG 667

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPD 431
           LL+D   Q  + +P LS IP +GALFRN R    +T + +   P++++  A  R ++   
Sbjct: 668 LLQDGYSQSNDAVPWLSTIPGIGALFRNERRQITKTNLMVFLRPYIIRDTAAGRGITL-- 725

Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           + Y     A+       +      +A ++    
Sbjct: 726 NRYDFMRRAQGLLQPERSWALPDMQAPQLPASA 758


>gi|299065327|emb|CBJ36496.1| General Secretory Pathway protein D, type II secretion system
           [Ralstonia solanacearum CMR15]
          Length = 805

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 116/306 (37%), Gaps = 45/306 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V++ L+ A   QV ++  I EV  D   Q+G Q  +             +FG      
Sbjct: 421 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 479

Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                       G  VS     +            +L AL    
Sbjct: 480 LNLGVIAATVGSGGIGSTAAQTALSSLTGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 539

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319
           ++  L+ P L  +  + A    G      T S        S T   +    D G+ L   
Sbjct: 540 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVK 599

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G + ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ 
Sbjct: 600 PQITDGGTVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVIANDGQVIVLGGLLEDNY 659

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q  ++ +P L  IP+LGALFR+    R++T + +   P++++  A    +  D+ Y    
Sbjct: 660 QDSEQKVPGLGDIPVLGALFRSESKTRKKTNLLVFLRPYILR-TAEATGALSDNRYGYMR 718

Query: 439 DAKAFF 444
           DA+  F
Sbjct: 719 DAQQGF 724


>gi|330989446|gb|EGH87549.1| general secretion pathway protein D [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 778

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 73/332 (21%), Positives = 128/332 (38%), Gaps = 31/332 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 428 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
               +           G    + G                 G  ++ G+ +    + +  
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGFNVGVVRGAVTIPGIGEVLDLKVLAR 544

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T S  TG          +V   + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDD 432
           L+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++     R+++   +
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIRDSGTGRNITL--N 722

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            Y     A+       N +    +A ++    
Sbjct: 723 RYEFMRRAQGNLRPERNWMLPDMQAPQLPSAA 754


>gi|90581085|ref|ZP_01236885.1| putative type II secretory pathway, component EpsD [Vibrio angustum
           S14]
 gi|90437781|gb|EAS62972.1| putative type II secretory pathway, component EpsD [Vibrio angustum
           S14]
          Length = 674

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 68/339 (20%), Positives = 126/339 (37%), Gaps = 52/339 (15%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194
           ++ VS+ +       T Q SQ + +        +  N    S+   VMN L         
Sbjct: 283 LKGVSENIQAANKSNTPQVSQSSKDEVMISAHDA-TNSLIISAPSNVMNKLESIISQLDI 341

Query: 195 ---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------- 241
              QV ++  I EV+       G Q      S     +  A  GG   ++          
Sbjct: 342 RRAQVHIEAMIVEVQEGDGVDFGVQWGSQDGSVIQFGNSGAPIGGLLSAQEAAKDKTTTQ 401

Query: 242 -----------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                                        GG       +    +  ++ A++    +  L
Sbjct: 402 KRYDPDTGAELPPIVTTESGDLAPMAAFLGGVKGAAAAIALGDWTALVTAVQANRNVNVL 461

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGR 327
           + P +T +  Q A+ + G +    T S +        T+V   D G+ L  TP +     
Sbjct: 462 STPNITVLDNQEANLSVGQEVPVTTGSQTGSNNDNPFTTVERKDVGIQLKVTPQINEGDS 521

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + ++I+  VS+      A D+  +  R+  T+V +  G  I L GL+++   + ++ +P+
Sbjct: 522 VQMKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQKVPI 580

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L  IP+LGALFR++    E+T + +   P +++     D
Sbjct: 581 LGDIPVLGALFRSTNNQTEKTNLMVFIRPTILRDGMSAD 619


>gi|1170050|sp|P31780|GSPD_AERHY RecName: Full=General secretion pathway protein D; Flags: Precursor
 gi|551421|emb|CAA47124.1| ExeD [Aeromonas hydrophila]
          Length = 678

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 109/264 (41%), Gaps = 24/264 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
           ++V+  L+I    QV ++  I E+       +G Q + T        +     G   ++ 
Sbjct: 341 EQVVAKLDIR-RAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTNAGPGIGSVAIAA 399

Query: 241 -----EGGDFSVKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQSA 285
                 G    +  + + F+          +  ++ AL   T    L+ P++  +  + A
Sbjct: 400 KDYKDNGTTTGLAKLAENFNGMAAGFYQGNWAMLVTALSTNTKSDILSTPSIVTMDNKEA 459

Query: 286 SFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           SF  G +   +T + ++ +     +++     G  L  TP +     + L I+ EVS   
Sbjct: 460 SFNVGQEVPVQTGTQNSTSGDTTFSTIERKTVGTKLVVTPQINEGDSVLLTIEQEVSSVG 519

Query: 341 IGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 D   P++  R     V + SG T+VL GL+ +  ++    +PLL  IP+LG LF
Sbjct: 520 KQATGTDGLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEEVSKVPLLGDIPVLGYLF 579

Query: 399 RNSRFNREETEIFIAATPFLVKPV 422
           R++  N  +  + +   P +++  
Sbjct: 580 RSTSNNTSKRNLMVFIRPTILRDA 603


>gi|17547833|ref|NP_521235.1| general secretion pathway protein D [Ralstonia solanacearum
           GMI1000]
 gi|17430138|emb|CAD16823.1| probable general secretory pathway d transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 805

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 117/306 (38%), Gaps = 45/306 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V++ L+ A   QV ++  I EV  D   Q+G Q  +             +FG      
Sbjct: 421 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 479

Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                       G  VS     +            +L AL    
Sbjct: 480 LNLGVIAATVGSGGIGSTAAQTALGSITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 539

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319
           ++  L+ P L  +  + A    G      T S        S T   +    D G+ L   
Sbjct: 540 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVK 599

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G + ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ 
Sbjct: 600 PQITDGGMVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVIANDGQVIVLGGLLEDNY 659

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q  ++ +P L  IP+LGALFR+    R++T + +   P++++  A    +  D+ Y+   
Sbjct: 660 QDSEQKVPGLGDIPVLGALFRSESKTRKKTNLLVFLRPYILR-TAEATGALSDNRYNYMR 718

Query: 439 DAKAFF 444
           DA+  F
Sbjct: 719 DAQQGF 724


>gi|253699252|ref|YP_003020441.1| general secretion pathway protein D [Geobacter sp. M21]
 gi|251774102|gb|ACT16683.1| general secretion pathway protein D [Geobacter sp. M21]
          Length = 635

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 109/273 (39%), Gaps = 19/273 (6%)

Query: 169 SQSGRNQYANSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
            +S  +    +S     NLL +         QV ++  IAEV  +  K++G Q  +   +
Sbjct: 321 DKSTNSLVIMASPTDYQNLLQVIQKLDRRSRQVFVQAMIAEVSANKAKELGVQWGVIAGA 380

Query: 224 SGPSKSFAADFG--GKFVSEGGDFSVKGVLD-------RFSFETVLHALERATAIRTLAE 274
           S  + S    F   G      G   +   L           F   L AL    A+  L+ 
Sbjct: 381 SNGTLSTVGTFDPFGAVAGLSGALQLADTLGITPPDGGVALFPATLKALHSNGALNVLST 440

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGL 330
           P +     + A    G    + + ++ T       S+   D G++L   P +     I L
Sbjct: 441 PNIMTSDNKEAEIFVGENVPFLSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYIKL 500

Query: 331 RIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            I  E+S     G           R A T+V + +  T+++ GL++D  Q  +  IPLL 
Sbjct: 501 DIYQEISAVKDFGTATNPNLGSTKRSAKTSVVVKNTDTVIIGGLIQDTDQVTESKIPLLG 560

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            IP+LG LF+  R  R++T + I  TP ++K  
Sbjct: 561 DIPLLGWLFKTKRTTRDKTNLLIMLTPRIIKDA 593


>gi|300690062|ref|YP_003751057.1| general Secretory Pathway protein D, type II secretion system
           [Ralstonia solanacearum PSI07]
 gi|299077122|emb|CBJ49746.1| General Secretory Pathway protein D, type II secretion system
           [Ralstonia solanacearum PSI07]
          Length = 805

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 118/306 (38%), Gaps = 45/306 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V++ L+ A   QV ++  I EV  D   Q+G Q  +             +FG      
Sbjct: 421 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 479

Query: 236 ------------GKFVSEGGDFSVKGVLD----------------RFSFETVLHALERAT 267
                       G   S     ++ G+                        +L AL    
Sbjct: 480 LNLGVIAATVGSGGIGSTAAQTALSGITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 539

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319
           ++  L+ P L  +  + A    G      T S        S T   +    D G+ L   
Sbjct: 540 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSAASVTPFQTFDRKDVGITLRVK 599

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G + ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ 
Sbjct: 600 PQITDGGLVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNY 659

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q  ++ +P L  IP+LGALFR+    R++T + +   P++++  A    +  D+ Y+   
Sbjct: 660 QDAEQKVPGLGDIPVLGALFRSESKQRKKTNLLVFLRPYILR-TAEATGALSDNRYNYMR 718

Query: 439 DAKAFF 444
           D +  F
Sbjct: 719 DTQQGF 724


>gi|71735614|ref|YP_274395.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556167|gb|AAZ35378.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 778

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 77/332 (23%), Positives = 133/332 (40%), Gaps = 31/332 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 428 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484

Query: 219 I----------------TGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLH 261
                            +G ++G S S      G  V    G  ++ G+ +    + +  
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T S  TG          +V   + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDD 432
           L+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++     R+++   +
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIRDSGTGRNITL--N 722

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            Y     A+       N +    +A ++    
Sbjct: 723 RYEFMRRAQGNLRPERNWMLPDMQAPQLPSAA 754


>gi|120600633|ref|YP_965207.1| type IV pilus secretin PilQ [Shewanella sp. W3-18-1]
 gi|146294790|ref|YP_001185214.1| type IV pilus secretin PilQ [Shewanella putrefaciens CN-32]
 gi|120560726|gb|ABM26653.1| type IV pilus secretin PilQ [Shewanella sp. W3-18-1]
 gi|145566480|gb|ABP77415.1| type IV pilus secretin PilQ [Shewanella putrefaciens CN-32]
          Length = 683

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 25/261 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----AADFGGKF 238
           +++ +L+I    QV ++  +  V+ ++ + +G +  IT        S     A D     
Sbjct: 422 RLVEVLDIPI-RQVLIESRMVTVKDNVSEDLGIRWGITDQQGNKGSSGSLEGAQDIANGI 480

Query: 239 VSEGGD-----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           V   GD                 F V  + D    +  L ALE+      +A P +T  +
Sbjct: 481 VPSIGDRLNVNLPAQVDSAASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 540

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y   S+S+GATSVT     + L  TP +    R+ L ++        
Sbjct: 541 QKAAYIEQGIEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSEGK 599

Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            V     P+     ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFR
Sbjct: 600 TVPTSTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFR 659

Query: 400 NSRFNREETEIFIAATPFLVK 420
           N+    E  E+ I  TP +V 
Sbjct: 660 NTTDKNERQELLIFVTPKIVD 680


>gi|15603090|ref|NP_246162.1| ComE [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721580|gb|AAK03309.1| ComE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 444

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 17/246 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPSKSFAADFGGKF 238
           +Q+ ++  I  +  + L+++G +  +                   S        +F    
Sbjct: 181 EQIAIEARIVTMTDESLQELGVRWGLFQATEQAHTIAGSLAANGFSNIENQLNVNFSTNS 240

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   I  +A P L   + +SAS   G +  Y   
Sbjct: 241 APVGSIALQLAKINGRLLDLELTALEREKHIEIIASPRLLTTNKKSASIKQGTEIPYVMK 300

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
                + SV   +  + L  TP +     I L +    +     V  + G++ S   ++ 
Sbjct: 301 RGKDKSESVEFREAVLGLDVTPHISKDNTILLDLLITQNTLGAPVVYDKGEIVSIDKQEI 360

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D + +    +PLL  +P+L  +F       ++ E+ I  TP
Sbjct: 361 NTQVVAQDGETIVLGGVFHDTMTKGVNKVPLLGDLPLLKHVFSQKTERHQKRELVIFVTP 420

Query: 417 FLVKPV 422
            ++KP 
Sbjct: 421 HIIKPS 426


>gi|294341497|emb|CAZ89914.1| putative general secretion pathway protein [Thiomonas sp. 3As]
          Length = 884

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 119/320 (37%), Gaps = 55/320 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------- 234
           ++V+  L++    QV ++  IAEV  +   Q+G Q      S+G   +            
Sbjct: 425 RRVIERLDVR-RAQVYVEALIAEVDANKAAQLGIQWQAIAGSAGNQNAIIGGSNYGTGGS 483

Query: 235 -----------GGKFVSEGGDFSVKGVLDRFS------------FETVLHALERATAIRT 271
                      GG   +         + +  +               + + L+       
Sbjct: 484 NIINLQAAISGGGSSAATALASGSLAIPNGLNIGILHNVAGMATLGLLANFLQTQDGANI 543

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVL 323
           L+ P L  +  + A    G    + T          + T   ++   D G+ L   P + 
Sbjct: 544 LSAPNLMTLDNEEAKIVVGQNVPFVTGQYAQTGSSATVTPFQTIERKDVGLTLKVRPQIT 603

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           + G I + +  EVS      NA  + +   R   T V +  G TIVL GL++D++ Q   
Sbjct: 604 AGGAIKMDVYQEVSSISSTTNAAGIIT-NKRSIQTAVLVNDGQTIVLGGLMQDNVSQNNS 662

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            IP L  IP LGALFR++    ++T++ +   P +V+                ED   A 
Sbjct: 663 KIPGLGDIPGLGALFRSNSRTAQKTDLMVFLRPIVVR---------------TEDQGNAL 707

Query: 444 FFNRVNKIYGPKEASEVEGQ 463
              R + + G ++ +++  Q
Sbjct: 708 SQQRYDTMRGMQDRAQLPAQ 727


>gi|319428303|gb|ADV56377.1| type IV pilus secretin PilQ [Shewanella putrefaciens 200]
          Length = 683

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 25/261 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----AADFGGKF 238
           +++ +L+I    QV ++  +  V+ ++ + +G +  IT        S     A D     
Sbjct: 422 RLVEVLDIPI-RQVLIESRMVTVKDNVSEDLGIRWGITDQQGNKGSSGSLEGAQDIANGI 480

Query: 239 VSEGGD-----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           V   GD                 F V  + D    +  L ALE+      +A P +T  +
Sbjct: 481 VPSIGDRLNVNLPAQVDSAASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 540

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y   S+S+GATSVT     + L  TP +    R+ L ++        
Sbjct: 541 QKAAYIEQGIEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSEGK 599

Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            V     P+     ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFR
Sbjct: 600 TVPTSTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFR 659

Query: 400 NSRFNREETEIFIAATPFLVK 420
           N+    E  E+ I  TP +V 
Sbjct: 660 NTTDKNERQELLIFVTPKIVD 680


>gi|320328774|gb|EFW84773.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 778

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 77/332 (23%), Positives = 133/332 (40%), Gaps = 31/332 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 428 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484

Query: 219 I----------------TGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLH 261
                            +G ++G S S      G  V    G  ++ G+ +    + +  
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T S  TG          +V   + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDD 432
           L+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++     R+++   +
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIRDSGTGRNITL--N 722

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            Y     A+       N +    +A ++    
Sbjct: 723 RYEFMRRAQGNLRPERNWMLPDMQAPQLPSAA 754


>gi|197117937|ref|YP_002138364.1| type IV pilus secretin lipoprotein PilQ [Geobacter bemidjiensis
           Bem]
 gi|197087297|gb|ACH38568.1| type IV pilus secretin lipoprotein PilQ [Geobacter bemidjiensis
           Bem]
          Length = 946

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 102/243 (41%), Gaps = 20/243 (8%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGD-- 244
           A E QV ++  I E      + +G Q  ++      S     S    FGG   + G    
Sbjct: 709 APEKQVMIEARIVEATSTFTRDLGVQWGLSYRDGSASVAGINSVDTGFGGVVSAAGPGSS 768

Query: 245 --------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                    S   +      +  L A      ++ ++ P +  ++ ++A  + G    Y+
Sbjct: 769 GAGGLGLGMSFGKLTSNIKLDMRLAAAATIGQVKIISTPKVVTLNNKAAKISQGQSIPYQ 828

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           T S+    T     +  + L  TP + + G + ++I+   + P      G  P    ++A
Sbjct: 829 TTSAE--GTKTEFVEAALTLEVTPHITADGSVSMKIKASNNSP----GTGSPPPINKKEA 882

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T + + +G T V+ G+  D   +   G+P LS IP+LG LF+++   + +TE+ I  TP
Sbjct: 883 TTELVVSNGDTTVIGGIYVDSDTESDTGVPFLSDIPLLGWLFKSNSKQKTKTELLIFITP 942

Query: 417 FLV 419
            +V
Sbjct: 943 KIV 945


>gi|320324664|gb|EFW80738.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 778

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 77/332 (23%), Positives = 133/332 (40%), Gaps = 31/332 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 428 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484

Query: 219 I----------------TGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLH 261
                            +G ++G S S      G  V    G  ++ G+ +    + +  
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T S  TG          +V   + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDD 432
           L+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++     R+++   +
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIRDSGTGRNITL--N 722

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            Y     A+       N +    +A ++    
Sbjct: 723 RYEFMRRAQGNLRPERNWMLPDMQAPQLPSAA 754


>gi|114045758|ref|YP_736308.1| type IV pilus secretin PilQ [Shewanella sp. MR-7]
 gi|113887200|gb|ABI41251.1| type IV pilus secretin PilQ [Shewanella sp. MR-7]
          Length = 684

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 25/260 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240
           +++ +L+I    QV ++  +  V+ D+ + +G +  +T        S   +  G   +  
Sbjct: 423 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIATGT 481

Query: 241 -------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                  F V  + D    +  L ALE+      +A P +T  +
Sbjct: 482 VPSLDNRLNVNLPAAVTNPTSIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 541

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y   S+S+GATSVT     + L  TP +    R+ L ++        
Sbjct: 542 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 600

Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            V+    P+     ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFR
Sbjct: 601 TVDTPTGPAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 660

Query: 400 NSRFNREETEIFIAATPFLV 419
           N+    E  E+ I  TP +V
Sbjct: 661 NTTDKNERQELLIFVTPKIV 680


>gi|313895052|ref|ZP_07828609.1| type IV pilus secretin PilQ [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975947|gb|EFR41405.1| type IV pilus secretin PilQ [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 426

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 18/288 (6%)

Query: 148 HGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            G   +  D+ R   V+ +   L   G    A  + +++++ L++    QV+L+  +  V
Sbjct: 140 SGNEVSASDTGRRVLVDTATNTLLFYGTEAEAF-AVREIISALDVK-PRQVSLEARVVSV 197

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-----------SVKGVLDRF 254
            +   KQ+G   + +     PS        G+    G                 GV   F
Sbjct: 198 SKAAAKQLGVDWTWSALPQYPSVDAGGRVTGRSTGGGRTGTSAPGIIRFGRGPAGVPYEF 257

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDY 312
            +   + AL      + LA P +T + G+ A    G +      T+S     +++   + 
Sbjct: 258 YYSAAISALITDGKAKMLARPNVTTVQGREALINIGAEVPVPRTTMSDHVTTSAIDYREA 317

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G++L +TP V + G I  R+ TEVS PV  V       ++ R ADTTV L  G T+V+ G
Sbjct: 318 GIILRYTPRVTADGTITARVHTEVSTPVY-VEELKAYRFQKRSADTTVRLRDGETMVIGG 376

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L+  D  +    IP L  +P+LGA FR+ R N+ E+E+ I  T  ++ 
Sbjct: 377 LIDSDESRSLSKIPFLGDLPVLGAFFRSVRTNKTESELMIFLTARVLD 424


>gi|296446147|ref|ZP_06888095.1| general secretion pathway protein D [Methylosinus trichosporium
           OB3b]
 gi|296256341|gb|EFH03420.1| general secretion pathway protein D [Methylosinus trichosporium
           OB3b]
          Length = 785

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 124/265 (46%), Gaps = 20/265 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAAD--F 234
           KV+  L++   +QV ++ TIAEV  +     G +       S+   S G + + AA+   
Sbjct: 489 KVVETLDVL-PNQVFIEATIAEVTLNDDLSFGVRWFLQKNASMGAFSDGDTGTPAANDTL 547

Query: 235 GGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +      +  G    +   + +  L AL + T +  ++ P+LT +  + A    G 
Sbjct: 548 GNNLLGAAVGAAFPGFAYAVRAANTQVTLSALNQITNVNIISTPSLTVLDNRQAVLQVGD 607

Query: 292 QHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           Q    T++ +          SV   D GV+L  TP +   GR+ L ++ EVS    G +A
Sbjct: 608 QVPVTTLTGANTNGGVTTFNSVNYRDTGVILSITPHINESGRVMLELEQEVSNVASGTSA 667

Query: 346 -GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P+ + R+  T V +    +++L GL++D   +    IP++  IP+ G  F++   +
Sbjct: 668 TSTTPTIKQRRVKTQVVVNDSESLMLGGLIQDSSSRGSSQIPVIGDIPLFGNAFKSKTNS 727

Query: 405 REETEIFIAATPFLVKPVA-MRDLS 428
             +TE+ I  TP +V+ +A  RD++
Sbjct: 728 AGKTELLIMITPHVVRTLAEARDIT 752


>gi|78222195|ref|YP_383942.1| type II and III secretion system secretin [Geobacter
           metallireducens GS-15]
 gi|78193450|gb|ABB31217.1| type II and III secretion system protein:NolW-like
           protein:Secretin/TonB, short-like protein [Geobacter
           metallireducens GS-15]
          Length = 870

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 111/254 (43%), Gaps = 17/254 (6%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  + ++  L+I  E QV ++  I E    + +++G Q  I    +       AD G   
Sbjct: 620 AEMRNLLKSLDIP-EKQVMIEARIVEASSTVTQELGIQWGIHARDANTIGVTNADVGFGG 678

Query: 239 VSEG-------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           +  G                +   ++   S +  L AL     I+ ++ P +  ++ ++A
Sbjct: 679 ILTGLAPTAGTFGPGAAAGITFGKLISGGSLDLKLSALASGERIKIISSPKVVTLNNKAA 738

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
             + G    Y TVS+    T     +  + L  TP + S G I ++I+   +        
Sbjct: 739 KISQGQSIPYSTVSAE--GTKTEFVEAALTLEVTPHIASDGSISMKIKATNNSAAPAPT- 795

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           G +P+   ++A T + + +G T V+ G+  D+  Q  +G+P    IP+LG LF++S   +
Sbjct: 796 GAVPAINKKEATTELLVRNGETTVIGGIYVDNDSQADQGVPFFKDIPLLGWLFKSSNTQK 855

Query: 406 EETEIFIAATPFLV 419
            + E+ I  TP +V
Sbjct: 856 IKNELLIFITPKIV 869


>gi|117922327|ref|YP_871519.1| type IV pilus secretin PilQ [Shewanella sp. ANA-3]
 gi|117614659|gb|ABK50113.1| type IV pilus secretin PilQ [Shewanella sp. ANA-3]
          Length = 684

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 25/260 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240
           +++ +L+I    QV ++  +  V+ D+ + +G +  +T        S   +  G   +  
Sbjct: 423 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIANGV 481

Query: 241 -------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                  F V  + D    +  L ALE+      +A P +T  +
Sbjct: 482 VPSLDNRLNVNLPAAVTNPTSIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 541

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y   S+S+GATSVT     + L  TP +    R+ L ++        
Sbjct: 542 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 600

Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            V+    P+     ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFR
Sbjct: 601 TVDTPTGPAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 660

Query: 400 NSRFNREETEIFIAATPFLV 419
           N+    E  E+ I  TP +V
Sbjct: 661 NTTDKNERQELLIFVTPKIV 680


>gi|320529858|ref|ZP_08030935.1| type IV pilus secretin PilQ [Selenomonas artemidis F0399]
 gi|320137876|gb|EFW29781.1| type IV pilus secretin PilQ [Selenomonas artemidis F0399]
          Length = 426

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 18/288 (6%)

Query: 148 HGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            G   +  D+ R   V+ +   L   G    A  + +++++ L++    QV+L+  +  V
Sbjct: 140 SGNEVSASDTGRRVLVDTATNTLLFYGTEAEAF-AVREIISALDVK-PRQVSLEARVVSV 197

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-----------SVKGVLDRF 254
            +   KQ+G   + +     PS        G+    G                 GV   F
Sbjct: 198 SKAAAKQLGVDWTWSALPQYPSVDAGGRVTGRSTGGGRTGTSAPGIIRFGRGPAGVPYEF 257

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDY 312
            +   + AL      + LA P +T + G+ A    G +      T+S     +++   + 
Sbjct: 258 YYSAAISALITDGKAKMLARPNVTTVQGREALINIGAEVPVPRTTMSDHVTTSAIDYREA 317

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G++L +TP V + G I  R+ TEVS PV  V       ++ R ADTTV L  G T+V+ G
Sbjct: 318 GIILRYTPRVTADGTITARVHTEVSTPVY-VEELKAYRFQKRSADTTVRLRDGETMVIGG 376

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L+  D  +    IP L  +P+LGA FR+ R N+ E+E+ I  T  ++ 
Sbjct: 377 LIDSDESRSLSKIPFLGDLPVLGAFFRSVRTNKTESELMIFLTARVLD 424


>gi|113972026|ref|YP_735819.1| type IV pilus secretin PilQ [Shewanella sp. MR-4]
 gi|113886710|gb|ABI40762.1| type IV pilus secretin PilQ [Shewanella sp. MR-4]
          Length = 684

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 25/260 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240
           +++ +L+I    QV ++  +  V+ D+ + +G +  +T        S   +  G   +  
Sbjct: 423 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIANGT 481

Query: 241 -------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                  F V  + D    +  L ALE+      +A P +T  +
Sbjct: 482 VPTLDNRLNVNLPAAVTNPTSIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 541

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y   S+S+GATSVT     + L  TP +    R+ L ++        
Sbjct: 542 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 600

Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            V+    P+     ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFR
Sbjct: 601 TVDTPTGPAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 660

Query: 400 NSRFNREETEIFIAATPFLV 419
           N+    E  E+ I  TP +V
Sbjct: 661 NTTDKNERQELLIFVTPKIV 680


>gi|331010889|gb|EGH90945.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 778

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 73/332 (21%), Positives = 128/332 (38%), Gaps = 31/332 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 428 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
               +           G    + G                 G  ++ G+ +    + +  
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 544

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T S  TG          +V   + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDD 432
           L+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++     R+++   +
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIRDSGTGRNITL--N 722

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            Y     A+       N +    +A ++    
Sbjct: 723 RYEFMRRAQGNLRPERNWMLPDMQAPQLPSAA 754


>gi|217967423|ref|YP_002352929.1| type II and III secretion system protein [Dictyoglomus turgidum DSM
            6724]
 gi|217336522|gb|ACK42315.1| type II and III secretion system protein [Dictyoglomus turgidum DSM
            6724]
          Length = 1421

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 13/242 (5%)

Query: 179  SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            SS + ++  L+     QV + V + EV R+ +K IG + S    S+G      A+ G + 
Sbjct: 1192 SSVESMIAKLDKPTP-QVKIDVQVIEVSRENVKDIGIEWSTGSISTG--LQITANLGWQD 1248

Query: 239  VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +          +++       + ALE     R LA+P++T +SG++     G +    + 
Sbjct: 1249 LR-------VSIVNPGQISANIRALETQNKARILAQPSMTTLSGKATRIMIGDRVPLISY 1301

Query: 299  SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
              + G   V+  D G++L+ TPTV + G I   I  +VS     V+  D+P    R+A T
Sbjct: 1302 -DAQGNRQVSFVDVGIILNVTPTVNADGTITANINPQVSTIQGYVS--DVPIISTREAQT 1358

Query: 359  TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             V L +G T+ L GLL+ +       +PLL  IPILG LF+  +  + E E+ I  TP L
Sbjct: 1359 IVNLKNGETLALGGLLRQEEIDSMSKVPLLGDIPILGELFKARKTQKVERELIILITPKL 1418

Query: 419  VK 420
            ++
Sbjct: 1419 IE 1420


>gi|114561562|ref|YP_749075.1| type IV pilus secretin PilQ [Shewanella frigidimarina NCIMB 400]
 gi|114332855|gb|ABI70237.1| type IV pilus secretin PilQ [Shewanella frigidimarina NCIMB 400]
          Length = 682

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 113/262 (43%), Gaps = 29/262 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++ +L+I  + QV ++  +  V+ D+ + +G +  IT      SK  +   GG      
Sbjct: 421 RLIEVLDIPIK-QVLIEARMVTVKDDVSEDLGIRWGITDQQG--SKGTSGTIGGATSIAN 477

Query: 243 GD-----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           G                        F V  + D    +  L ALE+      +A P +T 
Sbjct: 478 GTIPSIDDRLNVNLPAAASSATSIAFHVAKLADGTVLDLELSALEQENKGEIIASPRITT 537

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVS 337
            + +SA    G +  Y   S+S+GAT+VT     + L  TP +    R+ L   I  +  
Sbjct: 538 SNQKSAYIEQGVEIPYVE-SASSGATTVTFKKAVLSLRVTPQITPDDRVILDLEITQDSQ 596

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
              +    G+  +   ++  T V + +G TIVL G+ + ++      +P+L  IP++G L
Sbjct: 597 GTTVATATGEAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFL 656

Query: 398 FRNSRFNREETEIFIAATPFLV 419
           FRNS    E  E+ I  TP +V
Sbjct: 657 FRNSTDTNERQELLIFVTPKIV 678


>gi|307132897|ref|YP_003884913.1| putative fimbrial transporter [Dickeya dadantii 3937]
 gi|306530426|gb|ADN00357.1| predicted fimbrial transporter [Dickeya dadantii 3937]
          Length = 417

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 120/313 (38%), Gaps = 17/313 (5%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            L    R+ +   N+ V +          V T   SQR   L+E       +        
Sbjct: 100 ELAAKQRQQLPLQNLSVTL---QYAEAADVATSLQSQRGTLLTERGSVTVDKRTNTLLVR 156

Query: 182 KKVMNLLNIAGE--------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
             V  L  I            QV L   I  +  + LK +G    +  +++        +
Sbjct: 157 DVVSALEQIRPWLGELDKPLAQVQLAAHIVTISSEHLKALGVNWGLGDATTTGQALQMNN 216

Query: 234 FGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           F      E    +       L+    +  L ALE+   +  +A P L     Q+AS   G
Sbjct: 217 FSVSLPVESPAVNAGFHLAKLNGRLLDLELMALEQENEVEIIASPRLFTAHQQTASIKQG 276

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--- 347
            +  Y+  S ++G+TS+   +  + +  TP +L  G+I L +    + P   +  G+   
Sbjct: 277 TEIPYQVSSGASGSTSIEFKEAVLGMEVTPRILHGGQITLNLLISQNMPGRAIKQGEGSE 336

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++  T V +  G TIVL G+ +    Q +  +P LS +P +G  FR+       
Sbjct: 337 ILAIDKQEIQTQVTVLDGETIVLGGIFQQQKNQGERQVPGLSALPGIGQWFRSGNQQHTR 396

Query: 408 TEIFIAATPFLVK 420
            E+ I  TP L++
Sbjct: 397 RELVIFITPTLIQ 409


>gi|148550155|ref|YP_001270257.1| type IV pilus secretin PilQ [Pseudomonas putida F1]
 gi|148514213|gb|ABQ81073.1| type IV pilus secretin PilQ [Pseudomonas putida F1]
          Length = 420

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 106/248 (42%), Gaps = 6/248 (2%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGG 236
           +  ++++  L++    QV ++  I E   D  K +G +    + G    P K    D G 
Sbjct: 173 AEMRQLVAQLDVP-VRQVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLG- 230

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                G    +  +      +  L A+E++     +++P +     ++A    G +  Y+
Sbjct: 231 -LERAGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQ 289

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
             S S GATSV+  +  + L  TP +    ++ + ++    EP       ++P  R  + 
Sbjct: 290 ETSQS-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEV 348

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +  V +  G TIV+ G+       + + +P    +P +G LFR      +++E+ +  TP
Sbjct: 349 NAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 408

Query: 417 FLVKPVAM 424
            ++   A+
Sbjct: 409 RIMSDQAI 416


>gi|283788039|ref|YP_003367904.1| T2SS protein D [Citrobacter rodentium ICC168]
 gi|282951493|emb|CBG91192.1| putative T2SS protein D [Citrobacter rodentium ICC168]
          Length = 662

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 68/313 (21%), Positives = 118/313 (37%), Gaps = 34/313 (10%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             NQ      + V+  L+I    QV ++  I EV+      +G Q +     +    +  
Sbjct: 324 TANQSQLQQLEPVIEKLDIR-RAQVLVEAIIVEVQDGKGLNLGVQWANKNIGATQFTNTG 382

Query: 232 ADFGGK------FVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                       F  +GG  S     D FS             +  +L AL   +    L
Sbjct: 383 LPIFNAAQGVKEFKKQGGITSDNPAYDLFSKYRGMAAGFFSGDWAVLLTALSSDSKNDIL 442

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           + P++  +  + ASF  G         +T S     ++V     G  L  TP +     +
Sbjct: 443 STPSIVTLDNKEASFNVGQDVPVLSGSQTTSGDNIYSTVERKTVGTKLKVTPQINEGDSV 502

Query: 329 GLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            + I+ EVS      ++  + P++  R     V + SG T+VL GL+ D  ++    +PL
Sbjct: 503 LMEIEQEVSSVDSTASSSSLGPTFNTRTIQNAVLVKSGETVVLGGLMDDSSKEEVSKVPL 562

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  IP +G LFR +   + +  + +   P +++          DD Y      K   F  
Sbjct: 563 LGDIPFIGQLFRYTNHEKSKRNLMVFIRPTIIRD---------DDVYRSLSREKYTHFRD 613

Query: 448 VNKIYGPKEASEV 460
           + K    K +S++
Sbjct: 614 IQKTRADKNSSQL 626


>gi|313501056|gb|ADR62422.1| PilQ [Pseudomonas putida BIRD-1]
          Length = 384

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 106/248 (42%), Gaps = 6/248 (2%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGG 236
           +  ++++  L++    QV ++  I E   D  K +G +    + G    P K    D G 
Sbjct: 137 AEMRQLVAQLDVP-VRQVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLG- 194

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                G    +  +      +  L A+E++     +++P +     ++A    G +  Y+
Sbjct: 195 -LERAGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQ 253

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
             S S GATSV+  +  + L  TP +    ++ + ++    EP       ++P  R  + 
Sbjct: 254 ETSQS-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEV 312

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +  V +  G TIV+ G+       + + +P    +P +G LFR      +++E+ +  TP
Sbjct: 313 NAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 372

Query: 417 FLVKPVAM 424
            ++   A+
Sbjct: 373 RIMSDQAI 380


>gi|291612969|ref|YP_003523126.1| general secretion pathway protein D [Sideroxydans lithotrophicus
           ES-1]
 gi|291583081|gb|ADE10739.1| general secretion pathway protein D [Sideroxydans lithotrophicus
           ES-1]
          Length = 690

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 131/355 (36%), Gaps = 37/355 (10%)

Query: 99  VILIGHDGKQMLNLDIL--IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
           V  +        N+ ++     D   L  TLR  ++         S      G+  +   
Sbjct: 255 VTKLDSAANTPGNIHVVQLKNADATKLAQTLRSVLSGETAPPAAPSTVPQSAGVATSSTG 314

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
             +A   S   +  +    Y N   + V++ L++    Q+ ++  I EV  D   + G Q
Sbjct: 315 MIQADPSSNALIVTASEPIYNN--LRSVIDKLDVRRP-QIFVEALIVEVTADKAAEFGVQ 371

Query: 217 HS--ITGSSSGPSKSFAADFGGKFVSEG---------------------GDFSVKGVLDR 253
               +  S SG       +FG                            G  ++ GV   
Sbjct: 372 WQNLVGASKSGAHIIGGTNFGSVASGNNIIDAANNLSTVNQGLNIGIVNGTTTIPGVGTV 431

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGAT 305
            +   +  ALE  T    L+EP L  +  + A    G    + T         +++T   
Sbjct: 432 LNLGMLARALETDTNANILSEPNLMTLDNEEAKIVVGQNVPFITGQYAQTGSATTATPFQ 491

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPS 364
           ++   D G+ L   P ++  G + L+I  EVS  +   ++         R  ++ + +  
Sbjct: 492 TIERKDVGLTLKIKPQIMQGGTVKLQIYQEVSSVLPSSSSSTSGLITNKRSIESNILVDD 551

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              +VL GL++D +  ++   PLL  IPILG+LFR       +T + +   P+++
Sbjct: 552 NQIVVLGGLIQDSVNDVQSKTPLLGDIPILGSLFRYDTRQHTKTNLMVFIRPYIM 606


>gi|66046370|ref|YP_236211.1| type II and III secretion system protein:NolW-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257077|gb|AAY38173.1| type II and III secretion system protein:NolW-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 776

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 106/261 (40%), Gaps = 18/261 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             QV ++  I EV+      +G Q  +     +SG + +     G +     G  ++   
Sbjct: 503 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 562

Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
              F      + +  L ALE     + L+ P+L  ++ Q A    G        S +T  
Sbjct: 563 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 622

Query: 305 ------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKA 356
                 +SV     GV+L   P +   G + + IQ +VS+       +A   P    R  
Sbjct: 623 NTGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADSSGTTDANGNPRISTRSV 682

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V   SG T++L GL+K D  +    +P L +IP L  LF N+  +++ TE+ +  TP
Sbjct: 683 ATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITP 742

Query: 417 FLVKPVAMRDLSRPDDHYSVE 437
            ++   +     +  D Y  +
Sbjct: 743 RVI--TSSSQARQVTDDYRQQ 761


>gi|307131917|ref|YP_003883933.1| general secretion pathway protein D [Dickeya dadantii 3937]
 gi|399825|sp|Q01565|GSPD2_DICD3 RecName: Full=General secretion pathway protein D; AltName:
           Full=Pectic enzymes secretion protein outD; Flags:
           Precursor
 gi|581156|emb|CAA46370.1| outD [Erwinia chrysanthemi]
 gi|306529446|gb|ADM99376.1| General secretion pathway protein D [Dickeya dadantii 3937]
          Length = 710

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 67/307 (21%), Positives = 123/307 (40%), Gaps = 31/307 (10%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
                T+ + G   T++   +   L  T      R+       ++V+N L+I    QV +
Sbjct: 350 SSGGRTITIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 402

Query: 199 KVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGGKFVSEGGDFS------ 246
           +  IAE++      +G Q +         +++G   S A     +F S G   +      
Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAVIGTDQFRSNGTLTTAYASAL 462

Query: 247 -----VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                V     R ++  +L AL   +    LA P++  +    A+F  G +    T S +
Sbjct: 463 SSFNGVTAGFYRGNWSMLLTALSSDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522

Query: 302 TGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVR 354
           T A     +V     G+ L   P +     + L+I+ EVS         N+    ++  R
Sbjct: 523 TSADNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSTNSSLGVTFNTR 582

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             +  V + +G T+V+ GLL     +  + +PLL  IP LG+LFR+      +  + +  
Sbjct: 583 TVNNAVMVTNGETVVVGGLLDKTSVESNDKVPLLGDIPWLGSLFRSKSQEVRKRNLMLFL 642

Query: 415 TPFLVKP 421
            P +++ 
Sbjct: 643 RPTIIRD 649


>gi|56460012|ref|YP_155293.1| Flp pilus assembly protein CpaC [Idiomarina loihiensis L2TR]
 gi|56179022|gb|AAV81744.1| possible Flp pilus assembly protein CpaC [Idiomarina loihiensis
           L2TR]
          Length = 404

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 158/370 (42%), Gaps = 43/370 (11%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           +   +  I+ +     D+L+SD +  DV V       L G  VG+A++       + +  
Sbjct: 34  LEEGETRIISI-EPGSDILISDESVVDVHVLDNSRAILRGVGVGKADI--WLKSEEVLKE 90

Query: 112 LDILIERDIA-HLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVR--TIQDSQRAVELSETF 167
           L I++   +   LE  L     A+ ++     S   VL G V     ++ ++  E     
Sbjct: 91  LKIMVTASLKLSLEGRLEAISEAEQSLNKTEKSGLTVLSGKVSKRNYEELEKISE----- 145

Query: 168 LSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
                       + ++++NL          +TL+V I E +R  L+ +G +    G++SG
Sbjct: 146 ------------NHEEILNLTESFQEEPPMLTLRVNILETKRQYLEDLGIRW--QGTTSG 191

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           P  +F++   G F  +                + L  ++R    + LA P L+  SG+ A
Sbjct: 192 P--TFSSSLSGLFEWDA------------EINSQLMLMQRRGLAKLLANPVLSTQSGEKA 237

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           +F +GG+     V +  G   VT  +YG+ L   P VL   RI  ++  E+S     V+ 
Sbjct: 238 TFLAGGELPIPQVVAQ-GMQDVTFREYGIRLVIQPVVLDDNRIKTQLHAELSNIDPAVSV 296

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P    R+ ++      G T+VL+GLL  D     + IP L  +PIL   FR+ +   
Sbjct: 297 SGVPGILSRRTESVFLSNDGDTLVLSGLLSTDESAQDDQIPGLGSLPILENAFRSQQNRE 356

Query: 406 EETEIFIAAT 415
           + TE+ I  T
Sbjct: 357 QTTELIIMVT 366


>gi|313673420|ref|YP_004051531.1| type ii and iii secretion system protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940176|gb|ADR19368.1| type II and III secretion system protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 786

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 127/286 (44%), Gaps = 22/286 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           V+ G V + +   +    S +F+    ++  A    K V+  ++     QVT++  + EV
Sbjct: 507 VVKG-VLSPRGKVQVESKSNSFVVTDTKDSIAK--VKNVLKEVDKPTP-QVTIEARVVEV 562

Query: 206 RRDILKQIGFQHSITGSSSGPSKSF------AADFGG-------KFVSEGGDFSVKGVLD 252
                   G +       +  S +F        D GG          +     ++  + +
Sbjct: 563 SDSNDLAYGIKWGANTKINRTSINFPNSIGINGDAGGYMVNLPIGAPTGALALTLGNISN 622

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
            F+ +  + A+E     +T++ P +T +  Q A   SGG+ +      +T + ++   D 
Sbjct: 623 TFNIDMAISAMESRNKAKTISSPKITTLDNQEAEIKSGGKAIIVPSGDNTQSQTI---DV 679

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G+ L   P + +   I + I+ E S   +G  +G       +KA T V L +G T V+ G
Sbjct: 680 GIKLKVKPHITANNMIFMEIEVEKS--SLGAVSGTNAETLEKKAKTQVLLANGETTVIGG 737

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           + +D+  ++K  +P LSKIP+LG LFRN+   R + E+ +  TP +
Sbjct: 738 IYEDEQNEIKNEVPGLSKIPLLGWLFRNNIERRAKKELLVFITPRI 783


>gi|24371883|ref|NP_715925.1| type IV pilus biogenesis protein PilQ [Shewanella oneidensis MR-1]
 gi|24345706|gb|AAN53370.1|AE015476_11 type IV pilus biogenesis protein PilQ [Shewanella oneidensis MR-1]
          Length = 684

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 25/260 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240
           +++ +L+I    QV ++  +  V+ D+ + +G +  +T        S + +  G   +  
Sbjct: 423 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGNKGTSGSLEGAGDIANGK 481

Query: 241 -------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                  F V  + D    +  L ALE+      +A P +T  +
Sbjct: 482 VPSLDNRLNVNLPAAVTNPTSIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 541

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y   S+S+GATSVT     + L  TP +    R+ L ++        
Sbjct: 542 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 600

Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            V+    P+     ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFR
Sbjct: 601 TVDTPTGPAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 660

Query: 400 NSRFNREETEIFIAATPFLV 419
           N+    E  E+ I  TP +V
Sbjct: 661 NTTDKNERQELLIFVTPKIV 680


>gi|332532305|ref|ZP_08408185.1| type IV pilus biogenesis protein PilQ [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038172|gb|EGI74618.1| type IV pilus biogenesis protein PilQ [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 701

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 108/263 (41%), Gaps = 28/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSF--------- 230
           ++++  L+I    QV ++  +  VR ++ + +G +   +  GSS G S S          
Sbjct: 438 RRMIETLDIP-VQQVVIESRMVTVRDNVTEDLGVRWGFSDQGSSVGISGSLEGAEGIYNA 496

Query: 231 -------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                          +      +      +  + +    +  L ALE       +A P +
Sbjct: 497 TSTSDAPSISDRLNVNLPITNPAASIGLHIAKLANGTLIDLELSALEEENKGEIIASPRI 556

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTE 335
            A + Q A    G +  Y T S+S+GAT+V+     + L  TP +    ++ L   I  +
Sbjct: 557 IAANQQKARIEQGTEIPY-TESASSGATTVSFKKAVLSLEVTPHITPDNKVILDLIITQD 615

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I      +P+L  IP +G
Sbjct: 616 TRGDTVQTGTGEAVSIDTQEIQTQVLVENGQTVVLGGIFQQQIINTTSKVPILGDIPYVG 675

Query: 396 ALFRNSRFNREETEIFIAATPFL 418
            LF+ +    E+ E+ I  TP +
Sbjct: 676 RLFKTTSEFNEKRELLIFVTPKI 698


>gi|262370669|ref|ZP_06063994.1| type IV pilus biogenesis and competence protein pilQ [Acinetobacter
           johnsonii SH046]
 gi|262314469|gb|EEY95511.1| type IV pilus biogenesis and competence protein pilQ [Acinetobacter
           johnsonii SH046]
          Length = 390

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 112/253 (44%), Gaps = 14/253 (5%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--- 238
           +++++LL++A   QV ++  I     D  +++G + S      G S  +  DF   F   
Sbjct: 143 RRMIDLLDVA-VKQVMVEARIVTASTDFSRELGIKWSA--KKLGNSPVWGGDFQPSFDLG 199

Query: 239 ----VSEGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                +  G F+   + +  +     L AL+       L+ P +     Q A    G + 
Sbjct: 200 VDLATNTAGTFNFGLLKISDYMLNLELSALQADGHGEVLSAPKVLTGDKQKAYILRGTEI 259

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            Y+T S++ G  +       + L  TP++   G++ + ++ E        +AG +     
Sbjct: 260 PYQTWSATEGLKT-EFRAANLKLEVTPSITPDGKVQMALKIEKDTVGTLTSAGYL--INT 316

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            + +T V +  G T+VL G+  D  Q   E +P    +P++GALF+N+  +  +TE+ I 
Sbjct: 317 NELETNVLVDDGETVVLGGIFDDIKQNQYEKVPFFGDLPVVGALFKNNTRSSAQTELLIF 376

Query: 414 ATPFLVKPVAMRD 426
            TP +V     R+
Sbjct: 377 VTPRIVNDSVSRN 389


>gi|17547022|ref|NP_520424.1| GSPD-like protein [Ralstonia solanacearum GMI1000]
 gi|17429323|emb|CAD16010.1| probable type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum GMI1000]
          Length = 789

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 87/436 (19%), Positives = 166/436 (38%), Gaps = 65/436 (14%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           +  S+ + P   +   A + +    + +   +S+  ++ + + +      + VS+ +  D
Sbjct: 185 AAASIMRKPVSLQFRDANVRMVFEALSRTTGLSVIFDRDVRVDLK---TTIFVSNASLED 241

Query: 79  VVVHSPRTMYL---FGKNVGQANVILIGHD--GKQMLNLDILI------ERDIAHLEMTL 127
            V      + L     K V  AN + I      KQ    D+ +        D  H++  L
Sbjct: 242 TV----DMILLQNQLAKKVLNANTVFIYPATPAKQQEYQDLKVRTFQLSNTDAKHIDTLL 297

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
           +  +    I  +  ++TV +     TI+ ++R +   +                      
Sbjct: 298 KNLLKIKEIVTDERANTVSIRATPETIRVAERMIAAQD---------------------- 335

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
                E +V L+V + EV RD L  +G     + S   PS   A+ +G          + 
Sbjct: 336 ---LPEPEVMLEVEVLEVSRDRLTDLGIDWPNSFSLGTPSS--ASTWGALHHLTVNQLTA 390

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---- 303
            G+    + +         T    LA P +   + + A    G +    + SS       
Sbjct: 391 SGLSVTANLKL------TDTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSGP 444

Query: 304 --ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--------YRV 353
             + S+   D G+ L   P V     +G+++  EVS     +++ +  +           
Sbjct: 445 VYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNAQTGLSSLAYQIGT 504

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R A TT+ L  G T +L GL++D+ +     +P L ++P+LG LF N   + ++TEI + 
Sbjct: 505 RNASTTLRLKDGETQILGGLIQDEDRDAANKVPGLGQLPVLGRLFSNHNGDHKKTEIVLQ 564

Query: 414 ATPFLVKPVAMRDLSR 429
            TP +V+P    D   
Sbjct: 565 ITPHIVRPQLAADADT 580


>gi|304438627|ref|ZP_07398566.1| type II and III secretion system protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304368465|gb|EFM22151.1| type II and III secretion system protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 428

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 140/334 (41%), Gaps = 20/334 (5%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRA-V 161
            D ++ ++  ++   D   L       +     R +   ++              QR  V
Sbjct: 97  RDAQRRVHTYVVRYADPEELAHAANLSLTGEGKRAIVSKNNKDTSENEDSDSDTPQRVLV 156

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           + +   L   G    A  + ++++  L+ A   QV+L+  +  V +   K++G   S + 
Sbjct: 157 DTATNTLLFYGTESEA-RAVREIVFALDTA-PRQVSLEARVVAVSKRAAKELGIDWSWSS 214

Query: 222 ---------SSSGPSKSFAADFGGKFVSEGGDFSVK----GVLDRFSFETVLHALERATA 268
                     +SG       + G    S  G         G+   F +   + AL     
Sbjct: 215 LPQYPDVSRDASGSWHVNGRNAGMDGTSAPGIIRFGRGPEGMPYEFYYTAAIRALVSEGK 274

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPG 326
            + LA P +T + G+ A    G +     V++S   T   +   + G++L +TP V + G
Sbjct: 275 AKMLARPNVTTVQGREALINIGAEVPVPVVTTSNNVTTTGIEYREAGIILRYTPRVTADG 334

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I  R+ TEVS PV  V+      ++ R ADTTV L +G T+V+ GL+  D  +    IP
Sbjct: 335 NIVARVHTEVSTPVF-VDDLKAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRTLAKIP 393

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  +P+LGA FR  R +R ETE+ I  T  ++ 
Sbjct: 394 FLGDLPLLGAFFRTVRTSRNETELMIFLTAHVLD 427


>gi|145298443|ref|YP_001141284.1| S-protein secretion component D [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851215|gb|ABO89536.1| S-protein secretion component D [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 719

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 116/306 (37%), Gaps = 23/306 (7%)

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVT 197
                +     V+T+        +       +          ++++ LL        QV 
Sbjct: 407 NSGRAIPKSNNVQTMSVMTDQYRVVVDAKRNAIIFSGRYGDYQRLIELLQFVDQRPRQVL 466

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           L+  IAEV+      +GF+ ++         S         + + G+ ++ GV       
Sbjct: 467 LQAVIAEVKLTNDSSLGFEWNVNKGDITGGTS-------GLIQQTGNLNLAGVFG--DVT 517

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------ATSVTT 309
               A       + L+ P L  +  ++AS   G Q + KT   S G         TS   
Sbjct: 518 AKFAAALSEGNAKVLSSPRLVVLDQETASIKIGDQIVVKTGEISNGSSGNDPQVTTSYKY 577

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D G+ L  TP++   G I + I  E+S    G   GD P    R   + +   SG T+ 
Sbjct: 578 IDTGLSLEITPSINDDGLIEMVISQEISSVSAG--GGDTPPINRRAVQSKLLADSGKTVY 635

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GLL       +E +PLL  IP+LG LF+      E+TE+ +  TP+++   +  +   
Sbjct: 636 LGGLLSQSNTNNEEKVPLLGDIPLLGNLFKYQTKKIEKTELVLLITPYVI--TSKEEAEF 693

Query: 430 PDDHYS 435
             D + 
Sbjct: 694 YTDQFR 699


>gi|253701270|ref|YP_003022459.1| type IV pilus secretin PilQ [Geobacter sp. M21]
 gi|251776120|gb|ACT18701.1| type IV pilus secretin PilQ [Geobacter sp. M21]
          Length = 926

 Score =  192 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 102/243 (41%), Gaps = 20/243 (8%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGD-- 244
           A E QV ++  I E      + +G Q  ++      S     S    FGG   + G    
Sbjct: 689 APEKQVMIEARIVEATSTFTRDLGVQWGLSYRDGSASMAGINSVDTGFGGVVSAAGPGAT 748

Query: 245 --------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                    S   +      +  L A      ++ ++ P +  ++ ++A  + G    Y+
Sbjct: 749 GAGGLGLGMSFGKLTSNIKLDMRLAAAATIGQVKIISTPKVVTLNNKAAKISQGQSIPYQ 808

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           T S+    T     +  + L  TP + + G + ++I+   + P      G  P    ++A
Sbjct: 809 TTSAE--GTKTEFVEAALTLEVTPHITADGSVSMKIKASNNSP----GTGSPPPINKKEA 862

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T + + +G T V+ G+  D   +   G+P LS IP+LG LF+++   + +TE+ I  TP
Sbjct: 863 TTELVVSNGDTTVIGGIYVDSETESDTGVPFLSDIPLLGWLFKSNAKQKTKTELLIFITP 922

Query: 417 FLV 419
            ++
Sbjct: 923 KII 925


>gi|163751641|ref|ZP_02158861.1| type IV pilus biogenesis protein PilQ [Shewanella benthica KT99]
 gi|161328467|gb|EDP99622.1| type IV pilus biogenesis protein PilQ [Shewanella benthica KT99]
          Length = 681

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 109/259 (42%), Gaps = 24/259 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--GPSKSF---------- 230
           +++ +L+I    QV ++  +  V+ ++ + +G Q  IT      G S S           
Sbjct: 421 RLIEVLDIPI-RQVLIEARMVTVKDNVSEALGIQWGITDQQGDYGTSGSLRGAQSIANGI 479

Query: 231 --------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                         +  S    F V  + D    +  L ALE+      +A P +   + 
Sbjct: 480 IPALADRLNVALPARAGSASIAFHVARLADGTILDMELSALEQENRGEIIASPRIVTSNQ 539

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
           ++A    G +  Y   SSS+GAT+V+     + L  TP +    R+ L ++        V
Sbjct: 540 KAAYIEQGVEIPYIE-SSSSGATTVSFKKAVLSLRVTPHITPDNRVILDLEITQDSQGAV 598

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G+  S   ++  T V +  G TIVL G+ + ++      +P+L  IP LG LFR+
Sbjct: 599 VATPMGEAVSIDTQRIGTQVLVNHGETIVLGGIYQQNLISRVTKVPILGDIPFLGFLFRS 658

Query: 401 SRFNREETEIFIAATPFLV 419
           +  + E  E+ I  T  ++
Sbjct: 659 TSDSNERQELLIFITAKII 677


>gi|238783680|ref|ZP_04627700.1| General secretion pathway protein D [Yersinia bercovieri ATCC
           43970]
 gi|238715393|gb|EEQ07385.1| General secretion pathway protein D [Yersinia bercovieri ATCC
           43970]
          Length = 661

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 118/296 (39%), Gaps = 12/296 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++V+  L++    QV ++  I E +      +G Q +    S G +             +
Sbjct: 352 EQVIEKLDVR-RAQVLVEAIIVETQNAEGLNLGIQWA-NKYSGGINLLPRPGHARSHSEQ 409

Query: 242 GGDFSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                + G+   F   ++  +  AL   +    LA P++  +    A F  G +    T 
Sbjct: 410 PMPMVIAGLTAGFYKGNWNGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLTS 469

Query: 299 SSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SY 351
           + +T       S++    G++L   P +     + L I+ EVS      N         +
Sbjct: 470 TQTTATDKVYNSISRQSVGIMLKVKPQINKGDSVLLEIRQEVSSVADSSNTNTNNLGFIF 529

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R  +  V + SG T+V+ GLL + + +    IPLL  IP +G LFR S+   +++ + 
Sbjct: 530 NKRAINNAVLVKSGETVVVGGLLDEKLSKTVNKIPLLGDIPFIGGLFRQSKEKVDKSNLI 589

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
           +   P +++      +   D H   +D          N++Y    A+E++  +Y  
Sbjct: 590 LFIKPTILRETNDYSVVTIDKHTKYKDSNSQENTINNNRLYHDLLATEIKSDSYNQ 645


>gi|238788960|ref|ZP_04632750.1| Protein transporter HofQ [Yersinia frederiksenii ATCC 33641]
 gi|238722987|gb|EEQ14637.1| Protein transporter HofQ [Yersinia frederiksenii ATCC 33641]
          Length = 376

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L ++G +  +       S     F  +      +    F+V  +
Sbjct: 145 QQVQLAAHIVTISRENLHELGVRWGMGEGKPNTSLKMSDFNVNLPLPNSAINAGFNVARI 204

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +   LE+   +  +A P L     Q+AS   G    Y       GAT++   
Sbjct: 205 GGRLLELELSA-LEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSGGKKGATTIEFK 263

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +  GD  +     ++  T + +  G TI
Sbjct: 264 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETI 323

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +    Q    +P+L  IP LG LF+     +   E+ I  TP L+
Sbjct: 324 VLGGIFQQKSSQGVNKVPILGDIPWLGGLFKQDTQQQNRRELVIFITPRLI 374


>gi|167626227|ref|YP_001676727.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596228|gb|ABZ86226.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 582

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 102/246 (41%), Gaps = 9/246 (3%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFV 239
           + V+N +++   DQV ++  I EV R    ++GF ++++  S      K+F        V
Sbjct: 334 RNVINEIDVPN-DQVLIEARIVEVTRTSGLELGFNYTVSHPSGVDVGLKTFGTASESDTV 392

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                     +    S E  + ALE  +    +A P L   + ++A    G    Y+  +
Sbjct: 393 VASTAKLAYTLAGGLSLEMEIRALENESLANQVASPHLVVANNETAFIKDGQDVPYQQAT 452

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVR 354
           +S GA SV   +  + L  TP +   G I + +    +                P    R
Sbjct: 453 AS-GAASVAFQEAVLELQVTPQIAPDGNIVMEVLVTKNSVGASSGKTSTGEDLPPIIDKR 511

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  T V +  G T+V+ G+      + +  IP L  IP LG LF N+     ++E+ I  
Sbjct: 512 EVTTKVMVKDGETVVIGGIYSKKQIETRNKIPFLGDIPYLGYLFSNTVIGDTDSELLIFI 571

Query: 415 TPFLVK 420
           TP +++
Sbjct: 572 TPKIIE 577


>gi|238792887|ref|ZP_04636517.1| Protein transporter HofQ [Yersinia intermedia ATCC 29909]
 gi|238727741|gb|EEQ19265.1| Protein transporter HofQ [Yersinia intermedia ATCC 29909]
          Length = 406

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L+++G +  +  +    S    +F  +      +    F+V  +
Sbjct: 175 QQVQLAAHIVTMSREHLQELGVRWGMDDAKQARSLRVNNFNVNLPLPNSALSAGFNVARI 234

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +    E+   +  +A P L     Q+AS   G    Y       G  ++   
Sbjct: 235 GGRLLELELSAL-EQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGGPTIEFK 293

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +  GD  +     ++  T + +  G TI
Sbjct: 294 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAIKRGDSEALLIDKQEIKTQITVNDGETI 353

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +    Q    +P+L+ IP LGALF+     +   E+ I  TP L+
Sbjct: 354 VLGGIFQQKNSQGVNKVPILADIPWLGALFKQDTQQQSRRELVIFITPRLI 404


>gi|194291071|ref|YP_002006978.1| general secretory pathway protein d, type II secretion system
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224906|emb|CAQ70917.1| General Secretory Pathway protein D, type II secretion system
           [Cupriavidus taiwanensis LMG 19424]
          Length = 831

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 118/305 (38%), Gaps = 39/305 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVS 240
           + V++ L+ A   QV ++  I EV      ++G Q   +  SSSG +  FA    G    
Sbjct: 433 RGVIDDLD-ARRAQVYIESMIVEVTATQASELGIQWQGLISSSSGNNNVFAGTNFGTGGQ 491

Query: 241 EGGDFSVKGVLDRFS----------------------------FETVLHALERATAIRTL 272
              + ++ G L   +                               +L AL    ++  L
Sbjct: 492 NILNLTLAGALADSNRSAGIVAAQQLVPDIGGLNLGIVNRAMGLGALLRALGTNGSVNLL 551

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVT------THDYGVVLHFTPTVLS 324
           + P L  +  + A    G      T S   + GA SVT        D G+ L   P +  
Sbjct: 552 STPNLITLENEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITD 611

Query: 325 PGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G + ++I  E S  V    N    P+  VR  +T V +  G  IVL GL++D+     +
Sbjct: 612 GGLVKMQIFQESSNVVQATANLIQGPTTNVRSIETNVLVDDGQIIVLGGLIEDNYGDGVQ 671

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +PLL  IP +G LFR    NR +T + +   P++++     D    D +  +    + F
Sbjct: 672 KVPLLGDIPWIGGLFRYENKNRSKTNLLVFLRPYVMRTAGATDRLTADRYDYMRAQQQGF 731

Query: 444 FFNRV 448
               +
Sbjct: 732 VSPNI 736


>gi|302392509|ref|YP_003828329.1| type II and III secretion system protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302204586|gb|ADL13264.1| type II and III secretion system protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 428

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 9/252 (3%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV ++  I +V  D LK +G   S   +         +D     +  GG   ++    
Sbjct: 180 QKQVIIEARIEDVSYDKLKDLGINWSFAKNRGDNKGEQISD---TDIENGGSGILEIGDV 236

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTT 309
             ++  ++ AL+      TLA P +  I G+ A    G +      +       +T+++ 
Sbjct: 237 SMNYTAIIRALKSTDDSTTLANPRIATIDGKEAVINMGQEVPILKSEKDDDGQTSTNISF 296

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D G VL  TP +    +I + I+ EVSE       G  P    +K +T + + +G TIV
Sbjct: 297 RDVGTVLKITPRIN-NNQIRMNIKPEVSEVDHWE--GSYPVINTKKVETNIIVKNGETIV 353

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + GL+ +        +PL   +PI G LF++ R  +E+ E+ I  TP +++     D   
Sbjct: 354 IGGLISEKEINQLSKVPLFGDVPIFGELFKSRRTTKEKRELVIFITPRIIEDNGQADEEE 413

Query: 430 PDDHYSVEDDAK 441
            D   S+    K
Sbjct: 414 KDFSASIHSKDK 425


>gi|312958540|ref|ZP_07773060.1| type IV pilus biogenesis protein [Pseudomonas fluorescens WH6]
 gi|311287083|gb|EFQ65644.1| type IV pilus biogenesis protein [Pseudomonas fluorescens WH6]
          Length = 460

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 107/262 (40%), Gaps = 23/262 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
           ++++  L+I    QV ++  I E   D  K +G +     +    +              
Sbjct: 199 RRIVAQLDIP-VRQVMIEARIVEANVDYDKSLGARWGGAINRGNWAAGGIRKPVPDGEAP 257

Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                     D G    + G    +  + D    +  L A+E+      +++P +     
Sbjct: 258 PENLPSSPFVDLGSLTGTSG--LGIAYITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDK 315

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           ++A    G +  Y+  S+S GATSV+  +  + L  TP +     + + ++    EP   
Sbjct: 316 ETARILKGTEIPYQE-STSQGATSVSFKEASLSLEVTPQITPDNHVIMVVKVTKDEPDYL 374

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
               D+P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR   
Sbjct: 375 NKLNDVPPIKKNEVNAKVLVKDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDV 434

Query: 403 FNREETEIFIAATPFLVKPVAM 424
              +++E+ +  TP ++   A+
Sbjct: 435 LAEKKSELLVFLTPRIMNNQAI 456


>gi|299066099|emb|CBJ37280.1| putative type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum CMR15]
          Length = 792

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 91/405 (22%), Positives = 156/405 (38%), Gaps = 63/405 (15%)

Query: 51  SIGLNKVIILQVPVDVQD-VLVSDPTKADVVVHSPRTMYL---FGKNVGQANVILIGHD- 105
           + GLN +    V  D++  + VS+    D V      + L     K V  AN + I    
Sbjct: 213 TTGLNVIFDRDVRTDLKTTIFVSNAALDDTV----DMILLQSQLAKKVLNANTVFIYPAT 268

Query: 106 -GKQMLNLDILI------ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
             KQ    D+ +        D  H++  L+  +    I  +  ++TV +     TI+ ++
Sbjct: 269 PAKQQEYQDLKVRTFQLSNTDAKHIDTLLKNLLKIKEIVTDERANTVSIRATPETIRVAE 328

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R +   +                           E +V L+V + EV RD L  +G    
Sbjct: 329 RMIAAQD-------------------------LPEPEVMLEVEVLEVSRDRLTDLGIDWP 363

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            + S   PS   AA +G          +  G+    +F+         T    LA P + 
Sbjct: 364 NSFSLGTPSS--AATWGALHHLTVNQLTASGLSATANFKL------TDTDANLLASPRIR 415

Query: 279 AISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
             + + A    G +    + SS         + S+   D G+ L   P V     +G+++
Sbjct: 416 TRNKEKAKILIGDKVPVISSSSVPSTSGPVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKM 475

Query: 333 QTEVSEPVIGVNAGDMPS--------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             EVS     +++ +  +           R A TT+ L  G T +L GL++D+ +     
Sbjct: 476 SLEVSNITQIISSSNSQTGLSSLAYQIGTRNASTTLRLKDGETQILGGLIQDEDRDAANK 535

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           IP L ++P+LG LF N   + ++TEI +  TP +V+P    D   
Sbjct: 536 IPGLGQLPVLGRLFSNHNGDHKKTEIVLQITPHIVRPQLAADADT 580


>gi|270157382|ref|ZP_06186039.1| type IV pilus assembly protein PilQ [Legionella longbeachae D-4968]
 gi|269989407|gb|EEZ95661.1| type IV pilus assembly protein PilQ [Legionella longbeachae D-4968]
          Length = 701

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 107/263 (40%), Gaps = 27/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L++    QV ++  I EV +D  + +G +  ++           A+   + V+ 
Sbjct: 421 RKLIKELDVP-VKQVLIEARIVEVTKDFAQDLGIRWGVSKPQHLSGTLAGANQLAQGVAP 479

Query: 242 G-------------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                                        ++  + D    +  L ALE       ++ P 
Sbjct: 480 ADVTPFTDRLNLDLVAAPLTKANPATVGIALAQLGDNILLDLELSALESEGLAELISSPR 539

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L   + Q A   SG +  Y+  S+S+GAT+V      + L   P +    +I + ++   
Sbjct: 540 LITANQQPALIDSGQEIPYQQ-STSSGATAVAFKKAVLSLKVIPQITPDNKILMDLKINQ 598

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
              +       +P+   ++  T V + +G TIVL G+ + D  +    +P   ++P++G 
Sbjct: 599 DLALPNQTYNGVPAIATKEIQTNVLVSNGQTIVLGGIYQQDKSKTITRVPFFGQLPVVGN 658

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LF+N++      E+ I  TP ++
Sbjct: 659 LFKNTQIGVHNDELLIFITPKII 681


>gi|262280702|ref|ZP_06058485.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
 gi|262257602|gb|EEY76337.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
          Length = 758

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 73/312 (23%), Positives = 121/312 (38%), Gaps = 47/312 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
           +  +  L+I    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 382 ESAIQQLDIR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440

Query: 241 -----------------------EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPT 276
                                   G  F+V    + R ++  ++ AL+  T    L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIAGGANKGNGATFAVGNFENSRKAYGALIQALKANTKSNLLSTPS 500

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +T +T      +V   D GV L   P +   G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD++  ++GIP LS 
Sbjct: 561 EVEQEVSNVQTSKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVELSRQGIPGLSS 620

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           IP LG LFR+   +  +  + +   P +V                  +D +     R N+
Sbjct: 621 IPYLGRLFRSDSRSNTKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 665

Query: 451 IYGPKEASEVEG 462
           +Y  + A +  G
Sbjct: 666 LYSLQLAMDQNG 677


>gi|289164222|ref|YP_003454360.1| type IV pilus (Tfp) assembly protein PilQ [Legionella longbeachae
           NSW150]
 gi|288857395|emb|CBJ11223.1| type IV pilus (Tfp) assembly protein PilQ [Legionella longbeachae
           NSW150]
          Length = 701

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 107/263 (40%), Gaps = 27/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L++    QV ++  I EV +D  + +G +  ++           A+   + V+ 
Sbjct: 421 RKLIKELDVP-VKQVLIEARIVEVTKDFAQDLGIRWGVSKPQHLSGTLAGANQLAQGVAP 479

Query: 242 G-------------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                                        ++  + D    +  L ALE       ++ P 
Sbjct: 480 ADVTPFTDRLNLDLVAAPLTKANPATVGIALAQLGDNILLDLELSALESEGLAELISSPR 539

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L   + Q A   SG +  Y+  S+S+GAT+V      + L   P +    +I + ++   
Sbjct: 540 LITANQQPALIDSGQEIPYQQ-STSSGATAVAFKKAVLSLKVIPQITPDNKILMDLKINQ 598

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
              +       +P+   ++  T V + +G TIVL G+ + D  +    +P   ++P++G 
Sbjct: 599 DLALPNQTYNGVPAIATKEIQTNVLVSNGQTIVLGGIYQQDKSKTITRVPFFGQLPVVGN 658

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LF+N++      E+ I  TP ++
Sbjct: 659 LFKNTQIGVHNDELLIFITPKII 681


>gi|45657443|ref|YP_001529.1| general secretory pathway protein D [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|294828092|ref|NP_712556.2| type II secretory pathway component protein D [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45600682|gb|AAS70166.1| general secretory pathway protein D [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|293385940|gb|AAN49574.2| type II secretory pathway component protein D [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 596

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 103/263 (39%), Gaps = 19/263 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++ +L+ A   QV L+V I E+    L   G      G + G   S  +       S 
Sbjct: 303 RKIIKVLDSA-RKQVLLEVLIVELTSSDLNDFGIDWRYKGEAFGQFNSGLSKEANIINSN 361

Query: 242 GGDFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G        L  FS             +L A +       L+ P +  +  Q A  + G 
Sbjct: 362 GQVNPNINTLSGFSLGFLKAGSEQIIGILSANQGNENFNVLSAPQVLTVDNQEAEISVGQ 421

Query: 292 QHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               +T S + G                 G+ L FTP V    +I L +  E+       
Sbjct: 422 DVPVRTQSRNAGTGGTNAVTVDNYEYRPTGIKLKFTPHVNKNNKITLELFQEIKNIAEIA 481

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            AG  P++  R+  T++ + +  +IV+ GL+ +D Q+    IP L  IP LG LF+ +  
Sbjct: 482 LAGGNPTFNRREIKTSISIENTQSIVIGGLISNDKQKRIIKIPFLGDIPYLGHLFKRTTE 541

Query: 404 NREETEIFIAATPFLVKPVAMRD 426
             ++T + +  TP ++      D
Sbjct: 542 KIKKTNLMVFITPHILDSRETAD 564


>gi|94500410|ref|ZP_01306942.1| type 4 fimbrial biogenesis protein PilQ [Oceanobacter sp. RED65]
 gi|94427445|gb|EAT12423.1| type 4 fimbrial biogenesis protein PilQ [Oceanobacter sp. RED65]
          Length = 696

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 111/271 (40%), Gaps = 33/271 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
           ++ +N+L++    QV ++  I     ++ + +G +          S +     G   VS 
Sbjct: 427 RRAINILDVP-VKQVLIEARIVVASTNVGENLGIRWGGGYGVLDGSDNLTLGGGLDTVSR 485

Query: 241 ----------------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                                           F+     D +  +  L ALE       +
Sbjct: 486 FNDGITAGSPVRDISETDSVINFPIAAANASTFAFGLSTDEYVLDLELSALESDGKAEII 545

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           ++P +    GQ+A   +G +  Y+  S+S GATS+   +  + L  TP +    RI + +
Sbjct: 546 SQPRVITADGQTARIQAGTEIPYEQASAS-GATSIVFKEAVLKLEATPQITPDDRILMDL 604

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
              +++  +G     +PS    + +T V + +G TIVL G+ + +     +  P    +P
Sbjct: 605 --IINKDAVGEIFNSIPSIDTNELETQVLVNNGETIVLGGIFQSEDITQVDKTPFFGDLP 662

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           ++G LFR +    +++E+ I  TP LVK V 
Sbjct: 663 VIGQLFRRTTRTEDKSELLIFITPRLVKDVI 693


>gi|50083568|ref|YP_045078.1| putative general secretion pathway protein [Acinetobacter sp. ADP1]
 gi|49529544|emb|CAG67256.1| putative general secretion pathway protein [Acinetobacter sp. ADP1]
          Length = 772

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 110/270 (40%), Gaps = 33/270 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
           +  +  L++   +QV ++  I EV  D   Q+G Q ++   +SG      ++ G    S 
Sbjct: 383 EAAIQQLDVR-REQVLIEAAIIEVSGDDSDQLGIQWALGDLNSGVGLLSFSNVGASLASI 441

Query: 241 -----------------------EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPT 276
                                   G  F+V    + R ++  ++ AL+  T    L+ P+
Sbjct: 442 AAGYASTGTAGAAAAIASGTNSGNGATFAVGDFSNSRKAYGALIQALKSNTKSNVLSTPS 501

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIG 329
           +  +  + A    G    + T S STG+T       +V   D GV L   P +   G + 
Sbjct: 502 IVTMDNEEAYIVVGQNVPFVTGSVSTGSTGTINPYTTVERKDVGVTLKVIPHIGENGTVR 561

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           L ++ EVS+               R   T V    G T+VL GL+ D+    ++GIP LS
Sbjct: 562 LEVEQEVSDVQSSKGQATDLVTNKRAIKTAVLAEHGQTVVLGGLISDNTSLTRQGIPGLS 621

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP LG LFR    + E+  + +   P ++
Sbjct: 622 NIPYLGRLFRADSKSNEKRNLLVFIHPTII 651


>gi|330444859|ref|ZP_08308514.1| general secretion pathway protein D [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489169|dbj|GAA03011.1| general secretion pathway protein D [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 677

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 131/352 (37%), Gaps = 53/352 (15%)

Query: 127 LRRFIADSNIRV-EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ-SGRNQYANSSSKKV 184
           L+   A+  + V + VS+ +       T Q ++      E  +S     N    S+   V
Sbjct: 272 LKYAKAEDMVDVLKGVSENIQAANKSNTPQAAKSGSSKDEVMISAHPETNALIISAPSDV 331

Query: 185 MNLLNIAGED------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           MN L            QV ++  I EV+       G Q            +  A  GG  
Sbjct: 332 MNRLESIISQLDIRRAQVHIEAMIVEVQEGAGVDFGVQWGSQDGGVIQFGNSGAPIGGLL 391

Query: 239 VSE---------------------------------------GGDFSVKGVLDRFSFETV 259
            ++                                       GG       +    +  +
Sbjct: 392 SAQEAAKDKTTTQNRTDPNTGAQLPPIVTTESGDLAPMAAFLGGVKGAAAAISMGDWTAL 451

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGV 314
           + A++    +  L+ P +T +  Q A+ + G +    T SS+        T+V   D G+
Sbjct: 452 VTAVQANRNVNVLSTPNITVLDNQEANLSVGQEVPVTTGSSTGSNNDNPFTTVERKDVGI 511

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L  TP +     + ++I+  VS+      A D+  +  R+  T+V +  G  I L GL+
Sbjct: 512 QLKVTPQINEGDSVQMKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLM 570

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++   + ++ +P+L  IP+LGALFR++    E+T + +   P +++     D
Sbjct: 571 QEKTLESEQKVPILGDIPVLGALFRSTNDQTEKTNLMVFIRPTILRDGMSAD 622


>gi|89074487|ref|ZP_01160964.1| putative type II secretory pathway, component EpsD [Photobacterium
           sp. SKA34]
 gi|89049775|gb|EAR55325.1| putative type II secretory pathway, component EpsD [Photobacterium
           sp. SKA34]
          Length = 672

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 126/337 (37%), Gaps = 50/337 (14%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194
           ++ VS+ +       T Q SQ + +        +  N    S+   VMN L         
Sbjct: 283 LKGVSENIQAANKSNTPQVSQSSKDEVMISAHDA-TNSLIISAPSDVMNKLESIISQLDI 341

Query: 195 ---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------- 241
              QV ++  I EV+       G Q            +  A  GG   ++          
Sbjct: 342 RRAQVHIEAMIVEVQEGDGVNFGVQFGSQDGGVIQFGNSGAPIGGLLSAQEAAKDRTKTE 401

Query: 242 ---------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                                      GG       +    +  ++ A+++   +  L+ 
Sbjct: 402 TRYDADGKPYSYETTESGDLAPMAAFLGGIKGAAAAITMGDWTALVTAIKQNRNVNVLST 461

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIG 329
           P +T +  Q A+ + G +    T S +        T+V   D G+ L  TP +     + 
Sbjct: 462 PNVTVLDNQEANLSVGQEVPVTTGSQTGSNNDNPFTTVERKDVGIQLKVTPQINEGDSVQ 521

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           ++I+  VS+      A D+  +  R+  T+V +  G  I L GL+++   + ++ +P+L 
Sbjct: 522 MKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQKVPILG 580

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            IP+LGALFR++    E+T + +   P +++     D
Sbjct: 581 DIPVLGALFRSTNNQTEKTNLMVFIRPTILRDGMSAD 617


>gi|300918298|ref|ZP_07134902.1| general secretion pathway protein D [Escherichia coli MS 115-1]
 gi|300414559|gb|EFJ97869.1| general secretion pathway protein D [Escherichia coli MS 115-1]
          Length = 650

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/318 (21%), Positives = 120/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q A      V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 325 TADQSAQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 383

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 384 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 443

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 444 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 503

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PLL
Sbjct: 504 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 563

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 564 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYHSLSKEKYTRYRQEQQQRIDGKS 623

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 624 KALVGSEDLPVLDENTFN 641


>gi|39997126|ref|NP_953077.1| type IV pilus biogenesis protein PilQ [Geobacter sulfurreducens
           PCA]
 gi|39984016|gb|AAR35404.1| type IV pilus biogenesis protein PilQ [Geobacter sulfurreducens
           PCA]
 gi|298506139|gb|ADI84862.1| type IV pilus secretin lipoprotein PilQ [Geobacter sulfurreducens
           KN400]
          Length = 894

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 23/299 (7%)

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           +I    V D V     V++  +     + + T        + A +  + ++  L++  E 
Sbjct: 604 DINFAAVGDIVSQFNAVKS--ERGTISQDARTNRVIVKDIEPALAEMRILLKNLDLP-EK 660

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGG-----------KFVSE 241
           QV ++  I E      + +G Q  I  + SG    +S  A FGG              S 
Sbjct: 661 QVLIEARIVEATSTFTRDLGVQWGIHSNDSGADIIRSVDAGFGGIVTPPPASGFPAATSS 720

Query: 242 GGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           GG   +    +     +  L A   A  ++ ++ P +  ++ ++A  + G    Y+T S+
Sbjct: 721 GGAVGISFAKMGSLQVDLRLSAAAVAGLVKIVSTPKVVTLNNKAAKISQGQSIPYQTTSA 780

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
               T     +  + L  TP + + G + ++I+   +        G  P    ++A T +
Sbjct: 781 E--GTKTEFVEAALTLEVTPHITADGSVSMKIKASNN----SAGTGSPPPINKKEATTEL 834

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +G T V+ G+  D       G+P L  IP+LG LF+++  N+ +TE+ I  TP +V
Sbjct: 835 LVKNGETTVIGGIYVDSDTDEDRGVPFLMDIPVLGWLFKSNTKNKTKTELLIFITPKIV 893


>gi|295096434|emb|CBK85524.1| general secretion pathway protein D [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 638

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 115/286 (40%), Gaps = 19/286 (6%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGG 236
           +S +KV++ L+I    QV ++  IAEV+      +G Q +    G   G +    +    
Sbjct: 328 NSLEKVIDKLDIRRP-QVLVEAIIAEVQDGNGLDLGVQWTSKHGGVQFGATGLPISQIKN 386

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295
             +       +        F  ++ AL        L+ P++  +  + ASF  G      
Sbjct: 387 GTMKGASFTGLATGFFNGDFGALVTALSTDGKNDILSTPSVVTLDNKEASFNVGQDVPVL 446

Query: 296 ---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPS 350
              +T S      SV     G  L   P +     I L+I+ EVS         +   P+
Sbjct: 447 SGSQTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDNSATEDSSLGPT 506

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+VL GL+++  +Q    +PLL  IP++G LFR +  +  +  +
Sbjct: 507 FNTRTINNEVMVHSGQTVVLGGLMENVTKQSVSKVPLLGDIPLVGQLFRYTSQDTSKRNL 566

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
            +     +++          DD+YS     K     RV ++   +E
Sbjct: 567 MVFIHTTVLRD---------DDNYSAASKEKYDQI-RVRQMQRVEE 602


>gi|104779612|ref|YP_606110.1| type IV pili biogenesis protein PilQ [Pseudomonas entomophila L48]
 gi|95108599|emb|CAK13293.1| putative type IV pili biogenesis protein PilQ [Pseudomonas
           entomophila L48]
          Length = 412

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 108/248 (43%), Gaps = 6/248 (2%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGG 236
              ++++  L++    QV ++  I E   D  K +G +    + G  +        D G 
Sbjct: 165 GEIRRLVAQLDVP-VRQVMIEARIVEANIDYEKALGVRWGGPLYGQDNRLGSELFVDLGV 223

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +  +      V  +      +  L A+E++     +++P +     ++A    G +  Y+
Sbjct: 224 ERATSA--LGVGLLRSDVLLDLELSAMEKSGNGEIISQPRVVTADKETARILKGTEVPYQ 281

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
             ++ +GATS++  +  + L  TP +   G++ + ++    EP       ++P  R  + 
Sbjct: 282 E-TTKSGATSISFREASLSLEVTPQITPDGKVIMEVRVTKDEPDFVNALNNVPPIRKNEV 340

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +  V + +G TIV+ G+       + + +P    +P +G LFR      +++E+ +  TP
Sbjct: 341 NAKVRVTNGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 400

Query: 417 FLVKPVAM 424
            ++   A+
Sbjct: 401 RIMSDQAI 408


>gi|126176299|ref|YP_001052448.1| type IV pilus secretin PilQ [Shewanella baltica OS155]
 gi|125999504|gb|ABN63579.1| type IV pilus secretin PilQ [Shewanella baltica OS155]
          Length = 683

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 25/260 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229
           +++ +L+I    QV ++  +  V+ D+ + +G +  +T        S             
Sbjct: 422 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGI 480

Query: 230 -------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                     +      +     F V  + D    +  L ALE+      +A P +T  +
Sbjct: 481 IPTADQRLNVNLPSAASNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 540

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y   S+S+GATSVT     + L  TP +    R+ L ++        
Sbjct: 541 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 599

Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            V+    P+     ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFR
Sbjct: 600 TVDTPTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 659

Query: 400 NSRFNREETEIFIAATPFLV 419
           N+    E  E+ I  TP +V
Sbjct: 660 NTTDKNERQELLIFVTPKIV 679


>gi|148263871|ref|YP_001230577.1| type IV pilus secretin PilQ [Geobacter uraniireducens Rf4]
 gi|146397371|gb|ABQ26004.1| type IV pilus secretin PilQ [Geobacter uraniireducens Rf4]
          Length = 944

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 20/243 (8%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----FAADFGG---------- 236
           + E QV ++  I E +   ++ +G Q  +       S +    F   FGG          
Sbjct: 707 SPEKQVMIEARIVEAQTSFVRDLGVQWGLHYVDGSASVAGISRFDTGFGGVVTPPPTSGT 766

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                    S   +      +  L A   A  I+ ++ P +  ++ + A  + G    Y+
Sbjct: 767 SGPGAAAGMSFGKLASNIQIDMRLSAAVTAEQIKIISSPRVVTLNNKPAKISQGASIPYQ 826

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           T S+    T     +  + L  TP + S G IG++I+   +        G  P    ++A
Sbjct: 827 TTSAE--GTKTEFVEAALTLEVTPHITSDGSIGMKIKASNN----SAGTGSPPPINKKEA 880

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T + + +G T V+ G+  D      +G+P L  IP+LG LF+++  N+ + E+ I  TP
Sbjct: 881 TTELLVKNGETTVIGGIYVDSETDNDKGVPFLQDIPLLGWLFKSNTKNKSKNELLIFITP 940

Query: 417 FLV 419
            ++
Sbjct: 941 KII 943


>gi|85860072|ref|YP_462274.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
 gi|85723163|gb|ABC78106.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
          Length = 601

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 109/258 (42%), Gaps = 29/258 (11%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEG------- 242
           +    V ++  I EV       +G +  ++  + SG + S     GG     G       
Sbjct: 312 SSRPMVYIEALILEVNIVKDFNLGTEWRAMHDAGSGGTGSLLFGSGGLGPPAGTYNILPD 371

Query: 243 ----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                           G     G +       ++ A++  T I  L++P L  +  + A 
Sbjct: 372 VTTPATYSSGFTFGILGTGITLGGITFQDIGAMIQAIKSDTDIHILSKPQLLTMDNEEAQ 431

Query: 287 FTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
              G    Y    +T +++   +S    D GV L  TP + S G + ++I  EVS+    
Sbjct: 432 IHVGKNVPYATRKETTTTNLDYSSYEYRDVGVSLKITPHINSEGFVRMKINQEVSQVTED 491

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
              G +P+   R  +TTV +    T+V+ G++ D  Q     +PLL  IP+LG LF++  
Sbjct: 492 SPTG-LPTTNKRAVNTTVTIKDSETVVIGGMIGDSTQLGTYKVPLLGDIPVLGWLFKSRS 550

Query: 403 FNREETEIFIAATPFLVK 420
            NRE+T +++  TP +++
Sbjct: 551 SNREKTNLYVFITPRVIR 568


>gi|153002584|ref|YP_001368265.1| type IV pilus secretin PilQ [Shewanella baltica OS185]
 gi|160877305|ref|YP_001556621.1| type IV pilus secretin PilQ [Shewanella baltica OS195]
 gi|151367202|gb|ABS10202.1| type IV pilus secretin PilQ [Shewanella baltica OS185]
 gi|160862827|gb|ABX51361.1| type IV pilus secretin PilQ [Shewanella baltica OS195]
 gi|315269510|gb|ADT96363.1| type IV pilus secretin PilQ [Shewanella baltica OS678]
          Length = 683

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 25/260 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229
           +++ +L+I    QV ++  +  V+ D+ + +G +  +T        S             
Sbjct: 422 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGI 480

Query: 230 -------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                     +      +     F V  + D    +  L ALE+      +A P +T  +
Sbjct: 481 IPTPDQRLNVNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 540

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y   S+S+GATSVT     + L  TP +    R+ L ++        
Sbjct: 541 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 599

Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            V+    P+     ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFR
Sbjct: 600 TVDTPTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 659

Query: 400 NSRFNREETEIFIAATPFLV 419
           N+    E  E+ I  TP +V
Sbjct: 660 NTTDKNERQELLIFVTPKIV 679


>gi|239996578|ref|ZP_04717102.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonas macleodii ATCC 27126]
          Length = 590

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 106/261 (40%), Gaps = 24/261 (9%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----------- 229
           ++K +N L+I    QV ++  +  V  D+ +Q+G +   +        S           
Sbjct: 328 ARKTINALDIP-VKQVLIESRMVTVLDDVDEQLGVRWGFSDRQDDNGVSGSLEGADTIAG 386

Query: 230 ---------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                       +      +    F +  ++D    +  L ALE       +A P +T  
Sbjct: 387 GIVPSIDNRLNVNLPVTSAAGSIGFQIASLVDGTILDLELSALESENKGEIIASPRITVA 446

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSE 338
           +   A    G +  Y   +SS GATSV      + L  TP +    RI L   +  +   
Sbjct: 447 NQHEAYIEQGTEIPYVQATSS-GATSVEFKKAVLSLKVTPHITPDNRIILDLVVTQDTRG 505

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             +  + G+  +   ++  T V + +G TIVL G+ +         +PL   +P++GALF
Sbjct: 506 ETVSTSTGEAVAIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGDLPVVGALF 565

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RNS   +++ E+ I  TP +V
Sbjct: 566 RNSSQLQQKRELLIFVTPKIV 586


>gi|91791628|ref|YP_561279.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
 gi|91713630|gb|ABE53556.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
          Length = 683

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 114/261 (43%), Gaps = 27/261 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++ +L+I  + QV ++  +  V+ D+ + +G +  IT    G   +  +  G + ++ G
Sbjct: 422 RLIEVLDIPIK-QVLIESRMVTVKDDVSEDLGIRWGITDQQ-GTKGTSGSLTGSQNIANG 479

Query: 243 G----------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                                   F V  + D    +  L ALE+      +A P +T  
Sbjct: 480 VVPSIDDRLNVNLPAAASNHTSIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTS 539

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           + ++A    G +  Y   S+S+GATSVT     + L  TP +    R+ L ++       
Sbjct: 540 NQKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQG 598

Query: 341 IGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             V+    P+     ++  T V + +G TIVL G+ + ++      +P+L  IP +G LF
Sbjct: 599 KTVDTPTGPAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPILGDIPYVGFLF 658

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RN+    E  E+ I  TP +V
Sbjct: 659 RNTTDKNERQELLIFVTPKIV 679


>gi|304412135|ref|ZP_07393744.1| type IV pilus secretin PilQ [Shewanella baltica OS183]
 gi|307306879|ref|ZP_07586619.1| type IV pilus secretin PilQ [Shewanella baltica BA175]
 gi|304349401|gb|EFM13810.1| type IV pilus secretin PilQ [Shewanella baltica OS183]
 gi|306910457|gb|EFN40887.1| type IV pilus secretin PilQ [Shewanella baltica BA175]
          Length = 683

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 25/260 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229
           +++ +L+I    QV ++  +  V+ D+ + +G +  +T        S             
Sbjct: 422 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGI 480

Query: 230 -------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                     +      +     F V  + D    +  L ALE+      +A P +T  +
Sbjct: 481 IPTPDQRLNVNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 540

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y   S+S+GATSVT     + L  TP +    R+ L ++        
Sbjct: 541 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 599

Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            V+    P+     ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFR
Sbjct: 600 TVDTPTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 659

Query: 400 NSRFNREETEIFIAATPFLV 419
           N+    E  E+ I  TP +V
Sbjct: 660 NTTDKNERQELLIFVTPKIV 679


>gi|292489334|ref|YP_003532221.1| type II secretion system protein OutD [Erwinia amylovora CFBP1430]
 gi|292898442|ref|YP_003537811.1| type II secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291198290|emb|CBJ45396.1| type II secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291554768|emb|CBA22567.1| Type II secretion system protein outD [Erwinia amylovora CFBP1430]
 gi|312173499|emb|CBX81753.1| Type II secretion system protein outD [Erwinia amylovora ATCC
           BAA-2158]
          Length = 645

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 125/307 (40%), Gaps = 25/307 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--------------KKVMNLLNIA 191
           VL G+   IQD   +   S   +S+    +    ++              ++++N L+I+
Sbjct: 287 VLSGVSSNIQDKSESKSASPVAMSKDIVVKADTYTNSLIINAPPDVMGDLEEIINRLDIS 346

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGD--FS 246
              QV ++  I EV+      +G Q    +  G+    S +  ++  G  ++E       
Sbjct: 347 -RAQVQVEAIIVEVQDADGLALGVQWFNKNGGGTQFPASDAPVSNLIGSTIAEALSKTNG 405

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
           +       ++  +  AL+  +    LA P++  +    A FT G      T + +T    
Sbjct: 406 LAAGFYHGNWAGLFTALQTNSQNNILATPSIVTLDNMEAEFTVGQDVPILTGTQTTNTDG 465

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVE 361
              SV     G+ L   P +     + + I+ EVS      +   +  ++  R     V 
Sbjct: 466 VYNSVDRKSVGIKLKVKPQINKGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNAVL 525

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + SG T+V+ GLL      ++  +P+L +IP++G LFR +   + +  + +   P +++ 
Sbjct: 526 VESGKTVVVGGLLDTTHSNVESSVPVLGQIPLIGRLFRYTSDKKSKRNLMLFIRPTIIRQ 585

Query: 422 VAMRDLS 428
               DL+
Sbjct: 586 QDKFDLT 592


>gi|217975149|ref|YP_002359900.1| type IV pilus secretin PilQ [Shewanella baltica OS223]
 gi|217500284|gb|ACK48477.1| type IV pilus secretin PilQ [Shewanella baltica OS223]
          Length = 683

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 25/260 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229
           +++ +L+I    QV ++  +  V+ D+ + +G +  +T        S             
Sbjct: 422 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGI 480

Query: 230 -------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                     +      +     F V  + D    +  L ALE+      +A P +T  +
Sbjct: 481 IPTPDQRLNVNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 540

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y   S+S+GATSVT     + L  TP +    R+ L ++        
Sbjct: 541 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 599

Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            V+    P+     ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFR
Sbjct: 600 TVDTPTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 659

Query: 400 NSRFNREETEIFIAATPFLV 419
           N+    E  E+ I  TP +V
Sbjct: 660 NTTDKNERQELLIFVTPKIV 679


>gi|330881978|gb|EGH16127.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 334

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 125/309 (40%), Gaps = 29/309 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------TGSSSG 225
           ++V++ L+     QV ++  I EV  D   Q G Q                   +G ++G
Sbjct: 5   REVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQTGNLNGSGGFGGVNLGGSGLNTG 63

Query: 226 PSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
            S S      G  V    G  ++ G+ +    + +  AL+       L+ P L  +  ++
Sbjct: 64  GSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEA 123

Query: 285 ASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           AS   G    + T S  TG          +V   + G+ L+  P +   G + L I  EV
Sbjct: 124 ASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEV 183

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           S      +         R  DT++ L  G  +VL GLL+D   Q  E +P LS+IP+LG 
Sbjct: 184 SNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGV 243

Query: 397 LFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
           LFRN   +  +T + +   P++++     R+++   + Y     A+       N +    
Sbjct: 244 LFRNEARSTSKTNLMVFLRPYIIRDSGTGRNITL--NRYEFMRRAQGNLRPERNWMLPDM 301

Query: 456 EASEVEGQN 464
           +A ++    
Sbjct: 302 QAPQLPSAA 310


>gi|330839785|ref|YP_004414365.1| type II and III secretion system protein [Selenomonas sputigena
           ATCC 35185]
 gi|329747549|gb|AEC00906.1| type II and III secretion system protein [Selenomonas sputigena
           ATCC 35185]
          Length = 447

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 185/452 (40%), Gaps = 50/452 (11%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M    R     ++ +   + P+ A    ++  +A V  +    I +   + + L+  +  
Sbjct: 1   MGISPRVGAFFLAAWFAGALPAAASPLTLEVVDADVTALL-TSIARLSGLDLILDDSVKG 59

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDIL 115
           ++ + ++DV   +P +A         + L  +  G A      V+L+    +      + 
Sbjct: 60  RISLSLKDV---EPEEA---------LMLISRAKGLAVQHEGKVLLVRAAKEAAPFYRMH 107

Query: 116 I----ERDIAHLEMTLRRFIADSNIRV---EMVSDTVVLH--GMVRTIQDS--QRAVELS 164
           +      D+      ++  + ++ I        +    +   G+ RT +     RA    
Sbjct: 108 VLPVHHADLDTAFAAVKLSLGEAGISAIDENKKNGKEDISEQGLYRTGERLLIDRATNAL 167

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
             + ++        + ++ V++ L++  E QV+L+  +  + ++  K++G     +    
Sbjct: 168 LFYGTEE-----EKARAEAVLHSLDVPTE-QVSLEARVVALEKNAAKELGVDWDWSPLPI 221

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAE 274
            P  +  +  G +    G D  V GV+            F +   + AL        LA 
Sbjct: 222 DPHGTSKS--GAEGSRRGIDGEVPGVIRFGRTPEGKPYEFYYRAKIAALITDGKANVLAR 279

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRI 332
           P +T + G+ A    GG        ++    + +      G++L +TP +   G I  R+
Sbjct: 280 PNITTLQGREAVINIGGSVPVPETQTTNSTVTTSITYKKAGIILRYTPRIHENGEITARV 339

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            TEVS PV  V+A     ++ R ADTTV L  G T+V+ GL+  +  ++   +PLL  IP
Sbjct: 340 HTEVSSPVY-VDALKAYKFQERSADTTVRLKDGETMVIGGLIGSEESRVFAKVPLLGDIP 398

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           ILG  F++ R  + ++EI I  T  +++  + 
Sbjct: 399 ILGTFFKSVRRTKTDSEIMIFLTAHILRDTSP 430


>gi|311280237|ref|YP_003942468.1| general secretion pathway protein D [Enterobacter cloacae SCF1]
 gi|308749432|gb|ADO49184.1| general secretion pathway protein D [Enterobacter cloacae SCF1]
          Length = 647

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 107/273 (39%), Gaps = 20/273 (7%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +S +KV++ L+I    QV ++  IAEV+      +G Q +          S     G   
Sbjct: 328 NSLEKVIDKLDIR-RAQVLVEAIIAEVQDGSGLDVGVQWTSQ-HGGTQFTSTGLPIGQVK 385

Query: 239 VSEGGDFSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
             +       G+   F    F  ++ AL        L+ P++  +  + ASF  G     
Sbjct: 386 NGKNTGIGFNGLATGFFNGDFGALMTALSTDGKNDILSTPSVVTLDNKEASFNVGQDVPV 445

Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMP 349
               +T S      +V     G  L   P +     I L+I+ EVS         A   P
Sbjct: 446 LSGSQTTSGDNVFNTVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDSNATEDASLGP 505

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R  +  V + SG T+VL GL++ + +Q    +PLL  IP++G LFR +  +  +  
Sbjct: 506 TFNTRTINNEVMVHSGQTVVLGGLIESNTKQSVSKVPLLGDIPLVGQLFRYTSQDTSKRN 565

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           + +     +++          DD YS       
Sbjct: 566 LMVFIHTTVLRD---------DDSYSAASKEHY 589


>gi|120553763|ref|YP_958114.1| type IV pilus secretin PilQ [Marinobacter aquaeolei VT8]
 gi|120323612|gb|ABM17927.1| type IV pilus secretin PilQ [Marinobacter aquaeolei VT8]
          Length = 704

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 105/260 (40%), Gaps = 31/260 (11%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-------------------------SSSGPSK 228
            QV+++  I   + ++ + +G +                              S    + 
Sbjct: 448 RQVSIEARIVRAQTNVAEDLGVRWGGAAYNVDGDDVITVGGSLGTLQEARDAASGGSNTI 507

Query: 229 SFAADFG---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           SF    G   G        F++    D F  +  L ALE       +++P +     Q+A
Sbjct: 508 SFPGALGVDLGVSGDGASSFAIGWGSDDFLVDLELSALESDGRAEVVSQPRVVTADRQTA 567

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           S  SG +  Y+  +SS GAT++   +  + L  TP +    +I + +   V++   G   
Sbjct: 568 SIKSGEEIPYQEATSS-GATNIEFKEAVLSLEVTPQITPDDKIIMDL--VVNQDSRGEVT 624

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +PS    +  T V + +G T+VL G+ + ++       P L  IP LG LF+ +    
Sbjct: 625 AGIPSINTNEVTTQVLVANGETVVLGGIFQSEVATQTTKTPFLGDIPYLGRLFKRTEHID 684

Query: 406 EETEIFIAATPFLVKPVAMR 425
           E +E+ I  TP ++K   ++
Sbjct: 685 ERSELLIFITPKIIKNDILQ 704


>gi|332305113|ref|YP_004432964.1| type IV pilus secretin PilQ [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172442|gb|AEE21696.1| type IV pilus secretin PilQ [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 580

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 24/268 (8%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA- 232
            Q +   ++K+++ L+I    QV ++  +  VR +  +Q+G +   + +S   + S    
Sbjct: 308 TQASIDEARKLISALDIP-VKQVLIESRMVTVRDNAGEQLGVRWGFSNNSGDTATSGTIE 366

Query: 233 -----------------DFGGKFVSEGGDFS--VKGVLDRFSFETVLHALERATAIRTLA 273
                            +      S  G     V  ++D    +  L ALE       +A
Sbjct: 367 GADTLSSGVVPSIDNRLNVNLPVTSPAGSIGIQVARLVDGTILDLELSALESENKGEVIA 426

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR-- 331
            P +T  + + A    G +  Y   S+S+GATSV      + L  TP +    RI L   
Sbjct: 427 SPRITVANQREAYIEQGTEIPY-VQSTSSGATSVEFKKAVLSLKVTPHITPDHRIILDLV 485

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +  +     +  + G   +   ++  T V + +G TIVL G+ +         +PLL  I
Sbjct: 486 VTQDTRGDTVNTSTGLAVAIDTQEISTQVLVNNGETIVLGGIFQQTSTDDVSQVPLLGDI 545

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P+LG LF+N++   E+ E+ I  TP ++
Sbjct: 546 PVLGHLFKNTQTVNEKRELLIFVTPKIL 573


>gi|114571311|ref|YP_757991.1| general secretion pathway protein D [Maricaulis maris MCS10]
 gi|114341773|gb|ABI67053.1| general secretion pathway protein D [Maricaulis maris MCS10]
          Length = 686

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 128/332 (38%), Gaps = 18/332 (5%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTVVLHGMVRTIQDS 157
              ++ L   ++     + L   +    A         I      D    HG      + 
Sbjct: 327 AGSERRLRYYVVRNTPASTLATQITAAFAGGQTGAGQLIEPRFQGDDA--HGEPSAPGEE 384

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGF 215
           Q  + +    L+ +   +  +   +++++L+        QV ++ TIAEVR +     G 
Sbjct: 385 QSRLTIIPDELNNALIIRATDQEYREILDLVQRMDVMPPQVLIEATIAEVRLEDGLDFGV 444

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           +     + S  + S          +                   L AL   T +  L+ P
Sbjct: 445 RWYFENAGSNETSSLQFSDSNTGSTAPVFPGFNYAFSGTDLTATLSALRSITDVTVLSAP 504

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRI 328
           ++   + Q+A    G +    T ++++         +SV   + GV+L  TP + + G +
Sbjct: 505 SIMVQNNQTAHLQVGDEVPIVTQTATSVTESNAPIVSSVELRETGVILQVTPRINASGMV 564

Query: 329 GLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            L +  EVS       +G D P+ +  +  +TV + S  TI L GL+++     +   PL
Sbjct: 565 VLEVNQEVSSVRPTTTSGIDSPTIQKLEFTSTVSVRSSNTIALGGLIRETTSDNESRTPL 624

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  IP +G LFRN     + +E+ I  TP ++
Sbjct: 625 LGDIPGVGNLFRNRAMTSQRSELVIFLTPRII 656


>gi|188532939|ref|YP_001906736.1| General secretion pathway protein D [Erwinia tasmaniensis Et1/99]
 gi|188027981|emb|CAO95838.1| General secretion pathway protein D [Erwinia tasmaniensis Et1/99]
          Length = 646

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 121/305 (39%), Gaps = 26/305 (8%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANS-----------SSKKVMNLLNIAGEDQ 195
           + G ++   +S+ A  ++ +       + Y NS             + ++N L+I+   Q
Sbjct: 291 VSGSIQDKAESKTASPVAMSKDIVVKADTYTNSLIINAPPDVMGDLEDIINRLDIS-RAQ 349

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-------SEGGDFSVK 248
           V ++  I EV+      +G Q        G ++  AAD     +       +      + 
Sbjct: 350 VQVEAIIVEVQDADGLALGVQW--FNQHGGGTQFPAADAPVSHLIGSTVAETLSKTNGLA 407

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---- 304
                 ++  + +AL+  +    LA P++  +    A FT G      T S +T      
Sbjct: 408 AGFYHGNWAGLFNALQTNSLNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGVF 467

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELP 363
            SV     G+ L   P +     + + I+ EVS      +   +  ++  R     V + 
Sbjct: 468 NSVDRKSVGIKLKVKPQINEGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNAVLVQ 527

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SG T+V+ GLL      ++  +PLL KIP +G LFR +   + +  + +   P +++   
Sbjct: 528 SGKTVVVGGLLDTTHSNVESSVPLLGKIPFIGGLFRYTSDKKSKRNLMLFIRPTIIRQQD 587

Query: 424 MRDLS 428
             DL+
Sbjct: 588 SFDLT 592


>gi|260551051|ref|ZP_05825255.1| type II secretory pathway [Acinetobacter sp. RUH2624]
 gi|260405818|gb|EEW99306.1| type II secretory pathway [Acinetobacter sp. RUH2624]
          Length = 758

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 115/312 (36%), Gaps = 47/312 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440

Query: 242 GGDFSVKGVLDRFS-------------------------FETVLHALERATAIRTLAEPT 276
              +   G     S                         +  ++ AL+  T    L+ P+
Sbjct: 441 AAGYLSGGTAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +T +T      +V   D GV L   P +   G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGEGGTVRL 560

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD    ++GIP LS 
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           IP +G LFR+   +  +  + +   P +V                  +D +     R N+
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 665

Query: 451 IYGPKEASEVEG 462
           +Y  + A +  G
Sbjct: 666 LYSLQLAMDKNG 677


>gi|190574660|ref|YP_001972505.1| putative general secretion pathway protein D [Stenotrophomonas
           maltophilia K279a]
 gi|190012582|emb|CAQ46210.1| putative general secretion pathway protein D [Stenotrophomonas
           maltophilia K279a]
          Length = 792

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 32/314 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------- 234
           ++V++ L+     QV ++  I EV +    ++G Q  +    +     F           
Sbjct: 379 RRVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTTGGSGLNT 437

Query: 235 ------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                       G K     G  ++ GV    + + + +AL+       L+ P L  +  
Sbjct: 438 TARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSKGGANILSTPNLMTLDN 497

Query: 283 QSASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           ++AS   G    + +          S+    ++   D G+ L   P +   G + L I  
Sbjct: 498 EAASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQ 557

Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           EVS       N+        R  DT+V L  G  +VL GLL+D +   ++ +P L KIP+
Sbjct: 558 EVSSIDAQSANSTAGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPV 617

Query: 394 LGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           LGALFR+    R +T + +   P +V+ P A + L+R  D Y    +A+A      +   
Sbjct: 618 LGALFRSDTRKRAKTNLMVFLRPHVVREPAAGQRLTR--DRYDYMRNAQAGAQPAQSWAL 675

Query: 453 GPKEASEVEGQNYK 466
               A ++  Q+  
Sbjct: 676 PALSAPQLPPQDLS 689


>gi|34305612|gb|AAQ63613.1| GspD [Ralstonia solanacearum]
          Length = 709

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 115/306 (37%), Gaps = 45/306 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V++ L+ A   QV ++  I EV  D   Q+G Q  +             +FG      
Sbjct: 325 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 383

Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                       G  VS     +            +L AL    
Sbjct: 384 LNLGVVAATVGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 443

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319
           ++  L+ P L  +  + A    G      T S        S T   +    D G+ L   
Sbjct: 444 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVK 503

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G + ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ 
Sbjct: 504 PQITEGGLVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNY 563

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q  ++ +P L  IPILGALFR+    R++T + +   P++++  A    +  D+ Y+   
Sbjct: 564 QDSEQKVPGLGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRYNYMR 622

Query: 439 DAKAFF 444
             +  F
Sbjct: 623 QTQQGF 628


>gi|320180160|gb|EFW55099.1| General secretion pathway protein D [Shigella boydii ATCC 9905]
          Length = 654

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 124/337 (36%), Gaps = 24/337 (7%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +  D+       +T       +Q        V+  L+I    QV ++  I EV+      
Sbjct: 310 SAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 368

Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255
           +G Q S         +++G     AA     +   GG  S     D FS           
Sbjct: 369 LGVQWSNKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 428

Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309
             +  +L AL        LA P++  +  + ASF  G         +T S      +V  
Sbjct: 429 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 488

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G  L  TP V     + L I+ EVS      N+   P++  R     V + +G T+V
Sbjct: 489 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 548

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++   +     
Sbjct: 549 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLS 608

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            + +     + +     +   + G ++   ++   + 
Sbjct: 609 KEKYTRYRQEQQQRIDGKSKALVGSEDLPVLDENTFN 645


>gi|194439979|ref|ZP_03072038.1| general secretion pathway protein D [Escherichia coli 101-1]
 gi|307140008|ref|ZP_07499364.1| general secretory pathway component, cryptic [Escherichia coli
           H736]
 gi|331644021|ref|ZP_08345150.1| general secretion pathway protein D [Escherichia coli H736]
 gi|606259|gb|AAA58122.1| ORF_o654 [Escherichia coli str. K-12 substr. MG1655]
 gi|194421087|gb|EDX37115.1| general secretion pathway protein D [Escherichia coli 101-1]
 gi|315137900|dbj|BAJ45059.1| general secretion pathway protein D [Escherichia coli DH1]
 gi|323959524|gb|EGB55177.1| general secretion pathway protein D [Escherichia coli H489]
 gi|323970129|gb|EGB65403.1| general secretion pathway protein D [Escherichia coli TA007]
 gi|331036315|gb|EGI08541.1| general secretion pathway protein D [Escherichia coli H736]
 gi|332345271|gb|AEE58605.1| general secretion pathway protein GspD [Escherichia coli UMNK88]
          Length = 654

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q        V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 329 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 387

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 388 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 447

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 448 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 507

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PLL
Sbjct: 508 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 567

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 568 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 627

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 628 KALVGSEDLPVLDENTFN 645


>gi|318607800|emb|CBY29298.1| type IV pilus biogenesis protein PilQ [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 416

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L+++G +  +  +    S    +F  +      +    F+V  +
Sbjct: 185 QQVQLAAHIVTMSRENLQELGVRWGMGDTKPTSSLRMSNFNVNLPLPNSAISAGFNVARI 244

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +   LE+   I  +A P L     Q+AS   G    Y       GAT++   
Sbjct: 245 GGRLLELELSA-LEQENQIDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFK 303

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +  GD  +     ++  T + +  G TI
Sbjct: 304 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETI 363

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +         +P+L+ IP LG LF+     +   E+ I  TP L+
Sbjct: 364 VLGGIFQQKSSHGLNKVPILADIPWLGGLFKQDARQQSRRELVIFITPRLI 414


>gi|225024352|ref|ZP_03713544.1| hypothetical protein EIKCOROL_01227 [Eikenella corrodens ATCC
           23834]
 gi|224942849|gb|EEG24058.1| hypothetical protein EIKCOROL_01227 [Eikenella corrodens ATCC
           23834]
          Length = 707

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 108/260 (41%), Gaps = 16/260 (6%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------- 220
           NQ      ++++  L++    QV ++  I E      + +G +                 
Sbjct: 441 NQNVIKEFERLIEQLDVP-ARQVMIEARIVEANDGFSRALGVKFGYNKTSGSTRIGSGLG 499

Query: 221 -GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G ++G + S A +     +S     ++   L   +    L A++     + ++ P +  
Sbjct: 500 SGGANGNTFSIAPNVNLPAISATSSITIVRALSSGALGLELTAMQEQNRGKIISSPRVLT 559

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
              + A+  +G +  Y+  SSS   ++ +  +  + L  TP +   G + + I+      
Sbjct: 560 QDRKEATIKAGREIPYQEASSSGATST-SFKEAVLGLTVTPQITPDGNVIMDIKLNKDSV 618

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               +    P    ++  T   +  GGTI+L G+ +++    +  +PLL  IP++G LFR
Sbjct: 619 DENCSVLGTPCINTKELVTRAMVEDGGTIILGGIYEEENSNSQYKVPLLGDIPVVGNLFR 678

Query: 400 NSRFNREETEIFIAATPFLV 419
            +R N  + E+ I  TP ++
Sbjct: 679 GTRRNNSKNELLIFITPRIM 698


>gi|325529100|gb|EGD06093.1| putative secretion type II protein [Burkholderia sp. TJI49]
          Length = 608

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 166/435 (38%), Gaps = 64/435 (14%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK-- 76
           ++ S+ + P   +   A + +    + +   +++  ++ +   +      + V + +   
Sbjct: 158 ASSSIMRTPVSLQFRDANVRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVQNASLQD 214

Query: 77  -ADVVVHSPRTMYLFGKNVGQANVILIGHD--GKQMLNLDILI------ERDIAHLEMTL 127
             D+++   +      K    AN + I      K++   ++ +        D   ++  L
Sbjct: 215 TVDMILLQNQ----LDKKQMNANTLFIYPATPAKELEYQELKVRTFQLSNVDAKQVQSLL 270

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
           +  +      ++  ++TV + G    I+ ++  +   +                      
Sbjct: 271 KSLLKVKEAVIDEHANTVTIRGTPDMIKVAEEMIAAQD---------------------- 308

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
                E +V L+V + EV  D + Q+G     + + S PS   A  +G          +V
Sbjct: 309 ---LPEPEVMLEVEVLEVSHDRMSQLGINWPNSFTVSTPSS--ADTWGVLHHLPINALNV 363

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---- 303
            G+     F+         T    LA P + A + + A    G +    + SS+      
Sbjct: 364 SGLSATADFKL------TDTDANLLASPRIRARNKEKARIMIGDKVPVISSSSTPSTSGP 417

Query: 304 --ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR-------VR 354
                +   D G+ L   P V   G +G+++  EVS     +++G+             R
Sbjct: 418 SFTQMIQYLDVGIKLEVEPQVYRDGDVGIKLNLEVSNITNTISSGNSQGLSSLAYQIGTR 477

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            A T++ L  G T ++ GL+ D+ ++    +P L ++P+LG LF +   + ++TEI +  
Sbjct: 478 SASTSLRLRDGETQIMGGLISDEDRRNANKVPGLGQLPVLGRLFSDHGGDHKKTEIVLQI 537

Query: 415 TPFLVKPVAMRDLSR 429
           TP +V+P    D   
Sbjct: 538 TPHIVRPQVAADADT 552


>gi|227822850|ref|YP_002826822.1| general secretion pathway protein D, GspD [Sinorhizobium fredii
           NGR234]
 gi|227341851|gb|ACP26069.1| general secretion pathway protein D, GspD [Sinorhizobium fredii
           NGR234]
          Length = 692

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/352 (22%), Positives = 143/352 (40%), Gaps = 20/352 (5%)

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           +V+  G  G   +    ++  D+  +  T+          +EM  +  V           
Sbjct: 335 SVLATGQAGGGTVVRQSVVAPDL--VAETVAA--GGEGAPMEMPPEAAVEAASAPVSSVP 390

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
               ++    L  S   +      ++++  L++    QV L+  IAEV  +   + G + 
Sbjct: 391 SVVADIENNALLISTTAR-EYQRIEQILRQLDVL-PTQVFLEAVIAEVSLNDELKFGLRW 448

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
               +S     S  A         G +++          +  L AL   T ++ ++ P L
Sbjct: 449 YFEHNSDAFGLSDLASGAVAATFPGFNWTHLA----GDAQIALQALSSVTNVKVISSPNL 504

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGL 330
             I+ Q A    G Q    T +S++ +        SV   D G++L  TP + S GR+ L
Sbjct: 505 MVINNQQAKLQVGDQVPTVTQTSTSTSSADAAIVNSVELKDTGIILAVTPRINSSGRVML 564

Query: 331 RIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            IQ EVS  V    +G D P+ + RK  T V +  G ++ L GL+++     ++ +P+L 
Sbjct: 565 DIQQEVSNVVETTTSGIDSPTIQQRKISTRVVVNDGESLALGGLIQEKKSLGQKKMPVLG 624

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
            IP+ G  F++       TE+ I   P +V+ V  ++  +  D +  + D  
Sbjct: 625 DIPLFGNAFKSKTDGINRTELIIFIRPRIVRDV--QEARQVTDEFRQQFDFD 674


>gi|254038486|ref|ZP_04872542.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
 gi|226838992|gb|EEH71015.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
          Length = 654

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q        V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 329 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 387

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 388 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 447

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 448 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 507

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PLL
Sbjct: 508 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 567

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 568 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 627

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 628 KALVGSEDLPVLDENTFN 645


>gi|170018439|ref|YP_001723393.1| general secretion pathway protein D [Escherichia coli ATCC 8739]
 gi|188495544|ref|ZP_03002814.1| general secretion pathway protein D [Escherichia coli 53638]
 gi|169753367|gb|ACA76066.1| general secretion pathway protein D [Escherichia coli ATCC 8739]
 gi|188490743|gb|EDU65846.1| general secretion pathway protein D [Escherichia coli 53638]
          Length = 654

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q        V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 329 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 387

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 388 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 447

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 448 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 507

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PLL
Sbjct: 508 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 567

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 568 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 627

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 628 KALVGSEDLPVLDENTFN 645


>gi|322418906|ref|YP_004198129.1| type IV pilus secretin PilQ [Geobacter sp. M18]
 gi|320125293|gb|ADW12853.1| type IV pilus secretin PilQ [Geobacter sp. M18]
          Length = 922

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 104/243 (42%), Gaps = 20/243 (8%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGD-- 244
           A E QV ++  I E      + +G Q +++   S  S     S    FGG   + G    
Sbjct: 685 APEKQVMIEARIVEATSTFTRDLGVQWALSYKDSSASIANINSAETTFGGVVSTAGPGTS 744

Query: 245 --------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                    S   +      +  + A      ++ ++ P +  ++ ++A  + G    Y+
Sbjct: 745 GSGGLGLGMSFGKLTSNVQLDMRIAAAATIGQVKIISTPKVVTLNNKAAKISQGQSIPYQ 804

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           T S+    T     +  + L  TP + + G + ++I+   + P  G      P    ++A
Sbjct: 805 TTSAE--GTKTEFVEAALTLEVTPHITADGSVSMKIKASNNSPGTGTP----PPINKKEA 858

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T + + +G T V+ G+  D   +   G+P L+ IP+LG LF+++   + +TE+ I  TP
Sbjct: 859 TTELVVSNGDTTVIGGIYVDSDTESDTGVPFLADIPLLGWLFKSNTKQKTKTELLIFITP 918

Query: 417 FLV 419
            +V
Sbjct: 919 KIV 921


>gi|300702677|ref|YP_003744277.1| general secretory pathway protein d, type II secretion system
           [Ralstonia solanacearum CFBP2957]
 gi|299070338|emb|CBJ41633.1| General Secretory Pathway protein D, type II secretion system
           [Ralstonia solanacearum CFBP2957]
          Length = 809

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 115/306 (37%), Gaps = 45/306 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V++ L+ A   QV ++  I EV  D   Q+G Q  +             +FG      
Sbjct: 425 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 483

Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                       G  VS     +            +L AL    
Sbjct: 484 LNLGVVAATVGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 543

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319
           ++  L+ P L  +  + A    G      T S        S T   +    D G+ L   
Sbjct: 544 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVK 603

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G + ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ 
Sbjct: 604 PQITDGGLVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNY 663

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q  ++ +P L  IPILGALFR+    R++T + +   P++++  A    +  D+ Y+   
Sbjct: 664 QDSEQKVPGLGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRYNYMR 722

Query: 439 DAKAFF 444
             +  F
Sbjct: 723 QTQQGF 728


>gi|399792|sp|P31700|GSPD1_ERWCH RecName: Full=General secretion pathway protein D; AltName:
           Full=Pectic enzymes secretion protein outD; Flags:
           Precursor
 gi|148434|gb|AAA24831.1| secretory component [Erwinia chrysanthemi]
          Length = 712

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 135/361 (37%), Gaps = 42/361 (11%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
                T+V+ G   T++   +   L  T      R+       ++V+N L+I    QV +
Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITRPPDIMRDL------EQVINQLDIRRP-QVLV 402

Query: 199 KVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFA----------ADFGGKFVSEG 242
           +  IAE++      +G Q +         +++G   S A                + S  
Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAMIGTDQFRSDGTLTTAYASAL 462

Query: 243 GDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            +F+ +     R ++  +L AL        LA P++  +    A+F  G +    T S +
Sbjct: 463 SNFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522

Query: 302 TGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYR 352
           T         +V     G+ L   P +     + L+I+ EVS    G    N+    ++ 
Sbjct: 523 TVGSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNGSSNSSLGVTFN 582

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  +  V + +  T+V+ GLL     +    +PLL  IP LG+LFR+      +  + +
Sbjct: 583 TRTVNNAVMVTNRETVVVGGLLDKTAIETNNKVPLLGDIPWLGSLFRSKTQTMSKRNLML 642

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
              P +++             Y     +K   FN   +    +  S ++    + + G  
Sbjct: 643 FLRPTIIRDP---------QQYQQASISKYNSFNNEQQQQRGQGNSVLDNNTLRLSGGNT 693

Query: 473 Y 473
           Y
Sbjct: 694 Y 694


>gi|169634604|ref|YP_001708340.1| putative general secretion pathway protein [Acinetobacter baumannii
           SDF]
 gi|260556356|ref|ZP_05828575.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
           19606]
 gi|169153396|emb|CAP02525.1| putative general secretion pathway protein [Acinetobacter
           baumannii]
 gi|260410411|gb|EEX03710.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
           19606]
          Length = 756

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/310 (22%), Positives = 116/310 (37%), Gaps = 45/310 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV      Q+G Q ++   +SG       + G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGKDADQLGVQWALGDINSGIGLINFTNAGSSLASL 440

Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278
              +   G     S                       +  ++ AL+  TA   L+ P++ 
Sbjct: 441 AAGYLTGGAAGLGSAIGAGSSIALGKYKEGADGSRQLYGALIQALKENTASNLLSTPSIV 500

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            +  + A    G    + T S +T +T      +V   D GV L   P +   G + L I
Sbjct: 501 TMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGENGTVRLEI 560

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + EVS                R   T V    G T+VL GL+ DD++  ++GIP LS IP
Sbjct: 561 EQEVSNVQASKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVEFNRQGIPGLSSIP 620

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
            LG LFR+   +  +  + +   P +V                  +D +     R N++Y
Sbjct: 621 YLGRLFRSDTRSNTKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQLY 665

Query: 453 GPKEASEVEG 462
             + A +  G
Sbjct: 666 SLQLAMDKNG 675


>gi|71279149|ref|YP_267229.1| type IV pilus biogenesis protein PilQ [Colwellia psychrerythraea
           34H]
 gi|71144889|gb|AAZ25362.1| type IV pilus biogenesis protein PilQ [Colwellia psychrerythraea
           34H]
          Length = 706

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/267 (23%), Positives = 116/267 (43%), Gaps = 32/267 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFGG 236
           K+++ +L++    QV ++  +  V+ ++ +++G +  +T +     +SG  +  ++  G 
Sbjct: 439 KRMITILDVP-VRQVVIEARMVTVKDNMNEELGIRWGVTNTDGEFATSGSIEGASSANGT 497

Query: 237 KFVSEGG------------------------DFSVKGVLDRFSFETVLHALERATAIRTL 272
           + V+  G                         F V  + +    +  L ALE+      +
Sbjct: 498 RGVTTPGVGQVPTIGDGLNVNLPVANAAGTIAFQVARLANGTILDLELSALEKENKGEVI 557

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           A P +T  + + A    G +  Y+  +SS GAT+       + L  TP +    +I L +
Sbjct: 558 ASPRITTANQKEAYIEQGVEIPYQEAASS-GATATQFKKAVLSLTVTPHITPDDKIILDL 616

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                     + +G  P+   ++  T V + +G TIVL G+ +  I      IP+L  IP
Sbjct: 617 VVTQDTIS-DITSGFAPAIDTQRIGTQVLVNNGETIVLGGIYQQAIISTVSKIPILGDIP 675

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
            LG LFRNS    E+ E+ I  TP +V
Sbjct: 676 YLGWLFRNSSQLNEKKELLIFVTPRIV 702


>gi|293412744|ref|ZP_06655412.1| general secretion pathway protein D [Escherichia coli B354]
 gi|291468391|gb|EFF10884.1| general secretion pathway protein D [Escherichia coli B354]
          Length = 650

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q        V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 325 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 383

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 384 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 443

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 444 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 503

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PLL
Sbjct: 504 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 563

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 564 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 623

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 624 KALVGSEDLPVLDENTFN 641


>gi|301021125|ref|ZP_07185165.1| general secretion pathway protein D [Escherichia coli MS 196-1]
 gi|299881655|gb|EFI89866.1| general secretion pathway protein D [Escherichia coli MS 196-1]
          Length = 654

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q        V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 329 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 387

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 388 LPIFNAAQGVADYKKNGGLTSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 447

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 448 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 507

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PLL
Sbjct: 508 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 567

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 568 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 627

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 628 KALVGSEDLPVLDENTFN 645


>gi|117619719|ref|YP_857681.1| type IV pilus secretin PilQ [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561126|gb|ABK38074.1| type IV pilus secretin PilQ [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 733

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 113/270 (41%), Gaps = 31/270 (11%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---------S 229
           S+ K+++++L+I    QV ++  +  +     + +G +  +T +    +          S
Sbjct: 462 SNIKRMLDILDIP-VKQVVIEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGTIEGNDS 520

Query: 230 FAADFGGKFVSEGG------------------DFSVKGVLDRFSFETVLHALERATAIRT 271
              + GG  ++  G                   F V  + D    +  L ALE+ +    
Sbjct: 521 SGNNNGGSTITRPGVDDRLNVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEI 580

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P +T  + + A    G +  Y   SSS+GATSVT     + L  TP +    R+ L 
Sbjct: 581 IASPRVTTANQKPALIEQGTEIPYVE-SSSSGATSVTFKKAVLSLKVTPQITPDNRVILD 639

Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +          +    GD  S   +   T V + +G T+VL G+ +  I+     +PLL 
Sbjct: 640 LTVTQDTKGETVPTGTGDAVSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLG 699

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP LG LFR +    ++ E+ I  TP +V
Sbjct: 700 DIPGLGVLFRKTTSENKKRELLIFVTPKIV 729


>gi|122091112|emb|CAL13995.1| putative membrane transport protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 371

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L+++G +  +  +    S     F  +      +    F+V  +
Sbjct: 140 QQVQLAAHIVTMSRENLQELGVRWGMGDTKPTASLRMSDFNVNLPLPNSAVSAGFNVARI 199

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +    E+   +  +A P L     Q+AS   G    Y       GAT++   
Sbjct: 200 GGRLLELELSAL-EQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFK 258

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +  GD  +     ++  T + +  G TI
Sbjct: 259 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETI 318

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +    Q    +PLL+ IP LG LF+     +   E+ I  TP L+
Sbjct: 319 VLGGIFQQKSSQGVNKVPLLADIPWLGGLFKQDTQQQSRRELVIFITPKLI 369


>gi|71733584|ref|YP_275230.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554137|gb|AAZ33348.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 759

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 117/308 (37%), Gaps = 21/308 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206
           G     +    +  ++    S     +   +  K++ + +        QV ++  I EV 
Sbjct: 439 GANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 498

Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258
                 +G Q  +     +SG + +     G +     G  ++      F      + + 
Sbjct: 499 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 558

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312
            L ALE     + L+ P+L  ++ Q A    G              S++T  +SV     
Sbjct: 559 ALRALETNGRTQILSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 618

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIV 369
           GV+L   P +   G + + IQ +VS      N  D    P    R   T V   SG T++
Sbjct: 619 GVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAQSGQTVL 678

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++   +     +
Sbjct: 679 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQ 736

Query: 430 PDDHYSVE 437
             D Y  +
Sbjct: 737 VTDDYRQQ 744


>gi|320327874|gb|EFW83879.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 775

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 117/308 (37%), Gaps = 21/308 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206
           G     +    +  ++    S     +   +  K++ + +        QV ++  I EV 
Sbjct: 455 GANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 514

Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258
                 +G Q  +     +SG + +     G +     G  ++      F      + + 
Sbjct: 515 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 574

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312
            L ALE     + L+ P+L  ++ Q A    G              S++T  +SV     
Sbjct: 575 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 634

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIV 369
           GV+L   P +   G + + IQ +VS      N  D    P    R   T V   SG T++
Sbjct: 635 GVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAKSGQTVL 694

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++   +     +
Sbjct: 695 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQ 752

Query: 430 PDDHYSVE 437
             D Y  +
Sbjct: 753 VTDDYRQQ 760


>gi|94312323|ref|YP_585533.1| type II and III secretion system protein [Cupriavidus metallidurans
           CH34]
 gi|93356175|gb|ABF10264.1| general secretory pathway component, cryptic [Cupriavidus
           metallidurans CH34]
          Length = 783

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 75/333 (22%), Positives = 127/333 (38%), Gaps = 46/333 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236
           + V++ L+ A   QV ++  I EV   +  Q+G Q     +S G +  FA    G     
Sbjct: 414 RGVIDDLD-ARRAQVYIESMIVEVSGTLDSQLGIQWQGLINSGGNTVGFAGTNFGTGGQN 472

Query: 237 -----------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
                                    V + G  ++  +        +LHAL + T++  L+
Sbjct: 473 IINLTAAAALYNQNKTAGLAAISGLVPDVGGLNLGVINKAIGLGALLHALGQNTSVNLLS 532

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVT------THDYGVVLHFTPTVLSP 325
            P L  +  + A    G      T S   +  +TSVT        D G+ L   P +   
Sbjct: 533 TPNLITLENEEAKILIGQNIPITTGSYAQTGSSTSVTPFQTFDRKDVGITLRVRPQISEG 592

Query: 326 GRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           G + ++I  E S+   G       P+  VR  +T V +  G  IVL GL++D+     + 
Sbjct: 593 GLVKMQIYQESSQVAPGTLTNPQGPTTNVRSIETNVLVDDGQIIVLGGLIEDNYGDNVQK 652

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +PLL  IP LG+LFR     R +T + +   P++++     D    D +  +    + F 
Sbjct: 653 VPLLGDIPYLGSLFRYENKTRSKTNLLVFLRPYVMRTTTATDRLTQDRYDFIRGQQQNFV 712

Query: 445 FNRV------NKIYGPKEASEVE--GQNYKGAI 469
              +        +  P +A         Y G +
Sbjct: 713 SPNMVVRELNTPVLPPADAPTAPFVDPRYNGPV 745


>gi|323934477|gb|EGB30885.1| general secretion pathway protein D [Escherichia coli E1520]
          Length = 654

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q        V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 329 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 387

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 388 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 447

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 448 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 507

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PLL
Sbjct: 508 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 567

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 568 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 627

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 628 KALVGSEDLPVLDENTFN 645


>gi|209696322|ref|YP_002264253.1| general secretion pathway protein D [Aliivibrio salmonicida
           LFI1238]
 gi|208010276|emb|CAQ80608.1| general secretion pathway protein D [Aliivibrio salmonicida
           LFI1238]
          Length = 675

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 110/291 (37%), Gaps = 46/291 (15%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA- 231
           + K V+  L+I    QV ++  I E+       +G Q         I  S++G S     
Sbjct: 325 AVKDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLKTGAMIQYSNTGASIGGTM 383

Query: 232 -------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
                                           D+G    + GG       +    +  ++
Sbjct: 384 VGLEEAKDSTTTTAVYDSDDNFQRNETTTEEGDYGALASALGGVQGAAVSIMMGDWTALI 443

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315
            A+   +    L+ P++T +    ASF  G +    T S+S         +V   + G+ 
Sbjct: 444 TAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTSGSNNENPFQTVERKEVGIK 503

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L   P +     + L I+ EVS  V+G N      +  R+  T+V +  G  +VL GL+ 
Sbjct: 504 LKVVPQINEGNSVRLDIEQEVSN-VLGANGAVDVRFAKRQLSTSVMVEDGKMLVLGGLID 562

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +   + +  +P L  IPILG LF+++    E+  + I   P +++     D
Sbjct: 563 ERAMESESKVPFLGDIPILGYLFKSTSTQVEKKNLMIFIKPTIIRDGMTSD 613


>gi|255320952|ref|ZP_05362125.1| general secretion pathway protein D [Acinetobacter radioresistens
           SK82]
 gi|262379956|ref|ZP_06073111.1| general secretion pathway protein D [Acinetobacter radioresistens
           SH164]
 gi|255301916|gb|EET81160.1| general secretion pathway protein D [Acinetobacter radioresistens
           SK82]
 gi|262298150|gb|EEY86064.1| general secretion pathway protein D [Acinetobacter radioresistens
           SH164]
          Length = 751

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/311 (21%), Positives = 113/311 (36%), Gaps = 46/311 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L+I    QV ++  I EV  D   Q+G Q ++   SSG       + G    S 
Sbjct: 377 ESAIQQLDIR-RQQVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLVNFTNVGSSLASL 435

Query: 242 GGDFSVKGVL------------------------DRFSFETVLHALERATAIRTLAEPTL 277
              +   G                           R  +  ++ AL+  T    L+ P++
Sbjct: 436 AAGYLAGGSALANAASNLRGSSLLLGDYREGADGSRRLYGALIQALKDNTKSNLLSTPSI 495

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
             +  + A    G    + T S +T A      T+V   D GV L   P +   G + L 
Sbjct: 496 VTMDNEEAYIVVGQNVPFVTGSVTTNANGVNPYTTVERKDVGVTLKVIPHIGENGTVRLE 555

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++ EVS                R   T V    G T+VL GL+ D+    ++ +P L  I
Sbjct: 556 VEQEVSNVQPNKGQATDLVTSKRAIKTAVLAEHGQTVVLGGLISDNSIYSRQAVPGLGAI 615

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P +G LFR+   + E+  + +   P +V                   D +     R +++
Sbjct: 616 PGIGRLFRSDSNSNEKRNLLVFIHPTIV---------------GDASDVRRLTQRRYDQL 660

Query: 452 YGPKEASEVEG 462
           Y  + A + +G
Sbjct: 661 YSLQLAMDKDG 671


>gi|88861068|ref|ZP_01135703.1| General secretion pathway protein D [Pseudoalteromonas tunicata D2]
 gi|18643169|gb|AAL76242.1|AF441248_2 WmpD [Pseudoalteromonas tunicata]
 gi|88816996|gb|EAR26816.1| General secretion pathway protein D [Pseudoalteromonas tunicata D2]
          Length = 689

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 118/308 (38%), Gaps = 48/308 (15%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFA 231
           S + V+  L++    QV ++  I EV       +GFQ              ++ P  S  
Sbjct: 339 SLEGVIAKLDVR-RAQVLVEAIIVEVFEGDGVNLGFQWINKQGGMLQFNNGTTVPVGSLG 397

Query: 232 -------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
                                           D        GG   +     R  +  +L
Sbjct: 398 VAGELARDKTIKKTVLGTNEGSANQYEETKEGDLTALASLLGGVNGLALGFARGDWGAIL 457

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315
            A+   T    LA P++T +  + AS   G +    T S +         +V   + G+ 
Sbjct: 458 QAVSTDTNSNILATPSVTTMDNEEASMIVGQEVPIITGSQTGNNNTNPFQTVERQEVGIK 517

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +     + L I+ EVS  V G  A D+ +   R+  TTV    G  +VL GL+ 
Sbjct: 518 LKVTPQINDGSAVQLTIEQEVS-SVSGATAVDI-TINKREVTTTVLADDGAMVVLGGLID 575

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY 434
           +D+Q+    +PLL  +PI+G LF+++  NR +  + I   P +++  A M  LS    +Y
Sbjct: 576 EDVQESVSKVPLLGDLPIIGHLFKSTSTNRRKRNLLIFIRPTIIRDSATMNQLSNSKYNY 635

Query: 435 SVEDDAKA 442
              +  K 
Sbjct: 636 IRTEQQKQ 643


>gi|306816332|ref|ZP_07450470.1| general secretory pathway component, cryptic [Escherichia coli
           NC101]
 gi|305850728|gb|EFM51185.1| general secretory pathway component, cryptic [Escherichia coli
           NC101]
          Length = 654

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 123/337 (36%), Gaps = 24/337 (7%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +  D+       +T       +Q        V+  L+I    QV ++  I EV+      
Sbjct: 310 SAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 368

Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255
           +G Q +         +++G     AA     +   GG  S     D FS           
Sbjct: 369 LGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 428

Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309
             +  +L AL        LA P++  +  + ASF  G         +T S      +V  
Sbjct: 429 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 488

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G  L  TP V     + L I+ EVS      N+   P++  R     V + +G T+V
Sbjct: 489 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 548

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++   +     
Sbjct: 549 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLS 608

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            + +     + +     +   + G ++   +    + 
Sbjct: 609 KEKYTRYRQEQQLRIDGKSKALVGSEDLPVLNENTFN 645


>gi|77919728|ref|YP_357543.1| type IV pilus biogenesis protein PilQ [Pelobacter carbinolicus DSM
           2380]
 gi|77545811|gb|ABA89373.1| type IV pilus biogenesis protein PilQ [Pelobacter carbinolicus DSM
           2380]
          Length = 874

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 21/256 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD----FGGK 237
           K+++ LL+     QV ++  I E      + +G    I+   +  S     D     GG 
Sbjct: 623 KQLVRLLDTP-VRQVLIEARIVEASATFSRDLGVNWGISYQHNPGSDVEGNDASIGMGGT 681

Query: 238 FVS-------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
            V               G  F   GV D+   +  L ALE++   R ++ P ++ ++G+ 
Sbjct: 682 LVGIPVSPGEVSSGIVSGLTFGQVGV-DKTVLDLRLAALEQSGHGRIVSTPRVSTLNGEE 740

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A    G +  Y +VS     T        + L  TP +   G + L I+ +         
Sbjct: 741 AEVAQGTEIPYLSVSDD--GTKTEFKKAELSLKVTPEINPDGSVILEIEAKNDSRGANTG 798

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
             + P+   ++A T V +  G T V+ G+   D  +   G+P L  +PILG LF++   +
Sbjct: 799 LSEAPAIDTKRATTKVLVKDGETTVIGGIFIQDKSESDSGVPWLMNVPILGHLFKSKSVS 858

Query: 405 REETEIFIAATPFLVK 420
            E  E+ +  TP ++ 
Sbjct: 859 EERRELLVFITPRILD 874


>gi|229590685|ref|YP_002872804.1| general secretion pathway protein D/Q [Pseudomonas fluorescens
           SBW25]
 gi|229362551|emb|CAY49458.1| general secretion pathway protein D/Q [Pseudomonas fluorescens
           SBW25]
          Length = 788

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 81/358 (22%), Positives = 135/358 (37%), Gaps = 60/358 (16%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--------------KKVMNLLNIAGE 193
            G   + Q   +A + S  F +     Q   +++              ++V+++L+    
Sbjct: 410 SGGNSSSQAGAQATDQSVAFSAGGVTIQADATTNTLLISAPEPLYRNLREVIDMLDQR-R 468

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---------- 243
            QV ++  I EV  D   + G Q   +G  +G       + GG  +  GG          
Sbjct: 469 AQVVIESLIVEVGEDDANEFGVQWQ-SGDLAGKGVIGGTNLGGSGLQTGGLTSIDALPGG 527

Query: 244 --------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                     ++ GV +    + +  AL+       L+ P L  +  ++AS   G    +
Sbjct: 528 LSVGYLSGTVNIPGVGNVMDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPF 587

Query: 296 KTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVN 344
            + S  TG          +VT  + G+ L+  P +   G + L I  EVS          
Sbjct: 588 VSGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQEVSSIDERASSSA 647

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
                    R  DT++ L  G  +VL GLL+D   Q  E +P LS IP LGALFRN R  
Sbjct: 648 TSAGVVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNEAVPWLSSIPGLGALFRNERRA 707

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
             +T + +   P++++  A                 +A   NR + I   + A + E 
Sbjct: 708 TTKTNLMVFLRPYIIRDSAG---------------GRAITLNRYDFIRRAQGALQPER 750


>gi|299771842|ref|YP_003733868.1| general secretion pathway protein D [Acinetobacter sp. DR1]
 gi|298701930|gb|ADI92495.1| general secretion pathway protein D [Acinetobacter sp. DR1]
          Length = 757

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 120/312 (38%), Gaps = 47/312 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 381 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 439

Query: 241 -----------------------EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPT 276
                                   G   ++    + R ++  ++ AL+  T    L+ P+
Sbjct: 440 AAGYLSGGSAGAASAIAGGANKGNGATLALGNFENSRKAYGALIQALKSNTKSNLLSTPS 499

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +T +T      +V   D GV L   P +   G + L
Sbjct: 500 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 559

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD++  ++GIP LS 
Sbjct: 560 EVEQEVSNVQTSKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVELSRQGIPGLSS 619

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           IP +G LFR+   +  +  + +   P +V                  +D +     R N+
Sbjct: 620 IPYVGRLFRSDSRSNTKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 664

Query: 451 IYGPKEASEVEG 462
           +Y  + A +  G
Sbjct: 665 LYSLQLAMDRNG 676


>gi|290512027|ref|ZP_06551395.1| protein transporter HofQ [Klebsiella sp. 1_1_55]
 gi|289775817|gb|EFD83817.1| protein transporter HofQ [Klebsiella sp. 1_1_55]
          Length = 413

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G +  +  +   P      + ++D      S    F++ G 
Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAEAGGSPGSGQITTLSSDMSVNDASTRAGFNI-GK 239

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 240 INGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 299

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GR+ L+++   + P  V+  + G+  +   ++ +T VE+ SG T+
Sbjct: 300 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETL 359

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 360 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410


>gi|220931453|ref|YP_002508361.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
 gi|219992763|gb|ACL69366.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
          Length = 881

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 135/326 (41%), Gaps = 52/326 (15%)

Query: 106 GKQMLNLDILIE-RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           G+++    + ++  ++ +L   ++    D  ++   +   +++ G      + Q  V L 
Sbjct: 300 GEEIDTEVVRVDYGNLDNLISVIQGLFPDIRLQSNPLKKEIIIKG---NTSEVQEIVSL- 355

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                               +N L+I    QV ++    E+  + + + G + +++    
Sbjct: 356 --------------------VNSLDIP-RRQVIIEARFEEISANKISEFGMRPNLSEI-- 392

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                       +F+ +     +K +    ++   L  LE       LA P L  ++G++
Sbjct: 393 ------------QFIFDEATRELKSM--NITWPEYLRFLEEEGQANMLANPRLLTLNGEN 438

Query: 285 ASFTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           A    G +   K   +S           A S    D G+ L FTP +   G I + +  E
Sbjct: 439 ARLLIGDKVPVKIEETSGSSEESEGESNAVSYEYIDVGISLEFTPWITEDGYIIMDVAPE 498

Query: 336 VSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           VS     +  G  +P  + R+A T + L  G T  + GL+++D  +    +PLL  IP+L
Sbjct: 499 VSSLGSPMGGGESIPPIKTREARTKIRLKDGQTFAIGGLIREDELESIAKVPLLGDIPLL 558

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G LFR S+ ++ +TE+ I  TP +VK
Sbjct: 559 GTLFRRSQTDKVKTEVVIFITPHIVK 584


>gi|83746397|ref|ZP_00943449.1| GspD [Ralstonia solanacearum UW551]
 gi|83726938|gb|EAP74064.1| GspD [Ralstonia solanacearum UW551]
          Length = 809

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 115/306 (37%), Gaps = 45/306 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V++ L+ A   QV ++  I EV  D   Q+G Q  +             +FG      
Sbjct: 425 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 483

Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                       G  VS     +            +L AL    
Sbjct: 484 LNLGVVAATVGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 543

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319
           ++  L+ P L  +  + A    G      T S        S T   +    D G+ L   
Sbjct: 544 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVK 603

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G + ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ 
Sbjct: 604 PQITEGGLVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNY 663

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q  ++ +P L  IPILGALFR+    R++T + +   P++++  A    +  D+ Y+   
Sbjct: 664 QDSEQKVPGLGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRYNYMR 722

Query: 439 DAKAFF 444
             +  F
Sbjct: 723 QTQQGF 728


>gi|262373971|ref|ZP_06067248.1| general secretion pathway protein D [Acinetobacter junii SH205]
 gi|262310982|gb|EEY92069.1| general secretion pathway protein D [Acinetobacter junii SH205]
          Length = 751

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 101/267 (37%), Gaps = 30/267 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L+I    QV ++  I EV  D   Q+G Q ++   SSG       + G      
Sbjct: 379 EAAIQQLDIR-RQQVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLINFTNVGSSLSKL 437

Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278
              +   G     S                       +  ++ AL+  T    L+ P++ 
Sbjct: 438 AAGYLTGGAAGLGSAIGAGSSIVVGDYKEGANGSRKLYGALIQALKSNTKSNLLSTPSIV 497

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            +  + A    G    + T S +T +T      +V   D GV L   P +   G + L +
Sbjct: 498 TMDNEEAYIVVGQNVPFVTGSVTTNSTGVNPYTTVERKDVGVTLKVVPHIGEGGSVRLEV 557

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + EVS                R   T+V    G T+VL GL+ D+    ++G+P+L  IP
Sbjct: 558 EQEVSAVQESRGQATDLVTSKRAIKTSVLADHGQTVVLGGLISDNSIHSRQGLPVLGDIP 617

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
            LG LFR      E+  + +   P +V
Sbjct: 618 YLGRLFRADSKTNEKRNLLVFIHPTIV 644


>gi|229576793|ref|YP_001008121.2| putative outer membrane porin HofQ [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 376

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L+++G +  +  +    S     F  +      +    F+V  +
Sbjct: 145 QQVQLAAHIVTMSRENLQELGVRWGMGDTKPTASLRMSDFNVNLPLPNSAVSAGFNVARI 204

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +    E+   +  +A P L     Q+AS   G    Y       GAT++   
Sbjct: 205 GGRLLELELSAL-EQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFK 263

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +  GD  +     ++  T + +  G TI
Sbjct: 264 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETI 323

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +    Q    +PLL+ IP LG LF+     +   E+ I  TP L+
Sbjct: 324 VLGGIFQQKSSQGVNKVPLLADIPWLGGLFKQDTQQQSRRELVIFITPKLI 374


>gi|332139923|ref|YP_004425661.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549945|gb|AEA96663.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 547

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 106/261 (40%), Gaps = 24/261 (9%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----------- 229
           ++K +N L+I    QV ++  +  V  D+ +Q+G +   +        S           
Sbjct: 285 ARKTINALDIP-VKQVLIESRMVTVLDDVDEQLGVRWGFSDRQDDNGISGSIEGADTIAG 343

Query: 230 ---------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                       +      +    F +  ++D    +  L ALE       +A P +T  
Sbjct: 344 GVVPSIENRLNVNLPVSSAAGSIGFQIASLVDGTILDLELSALESENKGEIIASPRITVA 403

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSE 338
           +   A    G +  Y   +SS GATSV      + L  TP +    RI L   +  +   
Sbjct: 404 NQHEAYIEQGTEIPYVQATSS-GATSVEFKKAVLSLKVTPHITPDNRIILDLVVTQDTRG 462

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             +  + GD  +   ++  T V + +G TIVL G+ +         +PL   +P++GALF
Sbjct: 463 ETVTTSTGDAVAIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGDLPLVGALF 522

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RNS   +++ E+ I  TP +V
Sbjct: 523 RNSSQLQQKRELLIFVTPKIV 543


>gi|131592|sp|P15644|GSPD_KLEPN RecName: Full=General secretion pathway protein D; AltName:
           Full=Pullulanase secretion envelope pulD; Flags:
           Precursor
 gi|7246031|gb|AAA25126.2| pulD (ttg start codon) [Klebsiella pneumoniae]
          Length = 660

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 136/351 (38%), Gaps = 45/351 (12%)

Query: 146 VLHGMVRTIQDSQRA------VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----- 194
           VL G+  T+Q  ++A      ++ +    +    N    +++  VMN L           
Sbjct: 285 VLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 344

Query: 195 -QVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGGKFVSEGG---- 243
            QV ++  IAEV+      +G Q +         ++SG   S A     ++  +G     
Sbjct: 345 PQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSS 404

Query: 244 ----DFSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                 S  G+   F   ++  +L AL  +T    LA P++  +    A+F  G +    
Sbjct: 405 LASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVL 464

Query: 297 TVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMP 349
           T S +T       +V     G+ L   P +     + L I+ EVS         ++    
Sbjct: 465 TGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGA 524

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R  +  V + SG T+V+ GLL   +    + +PLL  IP++GALFR++     +  
Sbjct: 525 TFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRN 584

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
           + +   P +++           D Y      +   FN        KE ++ 
Sbjct: 585 LMLFIRPTVIRD---------RDEYRQASSGQYTAFNDAQSKQRGKENNDA 626


>gi|259982|gb|AAB24178.1| OutD=pectic enzyme secretion protein [Erwinia chrysanthemi,
           Peptide, 712 aa]
          Length = 712

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 135/361 (37%), Gaps = 42/361 (11%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
                T+V+ G   T++   +   L  T      R+       ++V+N L+I    QV +
Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITRPPDIMRDL------EQVINQLDIRRP-QVLV 402

Query: 199 KVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFA----------ADFGGKFVSEG 242
           +  IAE++      +G Q +         +++G   S A                + S  
Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAMIGTDQFRSDGTLTTAYASAL 462

Query: 243 GDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            +F+ +     R ++  +L AL        LA P++  +    A+F  G +    T S +
Sbjct: 463 SNFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522

Query: 302 TGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYR 352
           T         +V     G+ L   P +     + L+I+ EVS    G    N+    ++ 
Sbjct: 523 TVGSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNGSSNSSLGVTFN 582

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  +  V + +  T+V+ GLL     +    +PLL  IP LG+LFR+      +  + +
Sbjct: 583 TRTVNNAVMVTNRETVVVGGLLDKTAIETNNKVPLLGDIPWLGSLFRSKTQTMSKRNLML 642

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
              P +++             Y     +K   FN   +    +  S ++    + + G  
Sbjct: 643 FLRPTIIRDP---------QQYQQASISKYNSFNNEQQQQRGQGNSVLDNNTLRLSGGNT 693

Query: 473 Y 473
           Y
Sbjct: 694 Y 694


>gi|207722789|ref|YP_002253224.1| general secretory pathway protein d [Ralstonia solanacearum MolK2]
 gi|206587973|emb|CAQ18554.1| general secretory pathway protein d [Ralstonia solanacearum MolK2]
          Length = 809

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 115/306 (37%), Gaps = 45/306 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V++ L+ A   QV ++  I EV  D   Q+G Q  +             +FG      
Sbjct: 425 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 483

Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                       G  VS     +            +L AL    
Sbjct: 484 LNLGVVAATVGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 543

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319
           ++  L+ P L  +  + A    G      T S        S T   +    D G+ L   
Sbjct: 544 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVK 603

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G + ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ 
Sbjct: 604 PQITEGGLVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNY 663

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q  ++ +P L  IPILGALFR+    R++T + +   P++++  A    +  D+ Y+   
Sbjct: 664 QDSEQKVPGLGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRYNYMR 722

Query: 439 DAKAFF 444
             +  F
Sbjct: 723 QTQQGF 728


>gi|94313628|ref|YP_586837.1| putative secretion type II protein [Cupriavidus metallidurans CH34]
 gi|93357480|gb|ABF11568.1| Putative secretion type II protein; gspD(secretin)-like protein
           [Cupriavidus metallidurans CH34]
          Length = 734

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 162/438 (36%), Gaps = 75/438 (17%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           +  S+ + P   +   A I +    + +   +++  ++ +   +      + V++    D
Sbjct: 170 AAGSIMRTPVTLQFRDANIRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNAAIED 226

Query: 79  VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL----IERDIAH 122
            V            V +  T++++                ++   L +        D   
Sbjct: 227 AVDLILLQSQLDKKVLNANTLFIYPATP---------AKQQEYQELKVRTFQLSNVDSKQ 277

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           ++  L+  +    + V+  ++TV + G   TI+ +++ +   +                 
Sbjct: 278 VQSLLKSLLKIKEVVVDERANTVTIRGTPDTIRVAEQMIAAQD----------------- 320

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
                     E +V L+V + EV R+ L  +G     + + + P+   A  +G       
Sbjct: 321 --------LPEPEVMLEVQVLEVSRERLTDLGIAWPNSFTMATPAS--ATTWGVLHHLTA 370

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            +  V  +    +F+         T    LA P +   + + A    G +    + SS+ 
Sbjct: 371 NELEVSPLSATANFKL------TDTDANLLASPRIRTRNKEKARILIGDKVPVISSSSTP 424

Query: 303 G------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------ 350
                    ++   D G+ L   P V     +G+++  EVS     + +G+  +      
Sbjct: 425 STSGPSFTQTIQYLDVGIKLEVEPQVYRDNDVGIKLALEVSNITKTIQSGNAQTGLSSLA 484

Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R A T++ L  G T +L GL+ D  +   + +P L ++P++G LF +   +  +T
Sbjct: 485 YQIGTRSASTSLRLRDGETQILGGLISDQDRTSADKVPGLGQLPVVGRLFSDHNGDHVKT 544

Query: 409 EIFIAATPFLVKPVAMRD 426
           EI +  TP +V+P    D
Sbjct: 545 EIVLQITPHIVRPQLTMD 562


>gi|300903573|ref|ZP_07121495.1| general secretion pathway protein D [Escherichia coli MS 84-1]
 gi|301305534|ref|ZP_07211626.1| general secretion pathway protein D [Escherichia coli MS 124-1]
 gi|300404446|gb|EFJ87984.1| general secretion pathway protein D [Escherichia coli MS 84-1]
 gi|300839229|gb|EFK66989.1| general secretion pathway protein D [Escherichia coli MS 124-1]
 gi|315255908|gb|EFU35876.1| general secretion pathway protein D [Escherichia coli MS 85-1]
          Length = 650

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q        V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 325 TADQSVQEKLATVIARLDIRHA-QVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 383

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 384 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 443

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 444 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 503

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PLL
Sbjct: 504 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 563

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 564 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYHSLSKEKYTRYRQEQQQRIDGKS 623

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 624 KALVGSEDLPVLDENTFN 641


>gi|229589906|ref|YP_002872025.1| putative type II secretion pathway protein D [Pseudomonas
           fluorescens SBW25]
 gi|229361772|emb|CAY48654.1| putative type II secretion pathway protein D precursor [Pseudomonas
           fluorescens SBW25]
          Length = 770

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 73/304 (24%), Positives = 126/304 (41%), Gaps = 31/304 (10%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V+++L+     QV ++  I EV  D   + G Q  
Sbjct: 419 QADATTNTLLISAPDPLYRN--LREVIDMLDQR-RAQVVIESLIVEVGEDDATEFGVQWQ 475

Query: 219 I----------------TGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETV 259
                            +G +S P+   + D   K ++ G   G   + G+      + +
Sbjct: 476 AGNLAGKGGFGGVNLGGSGVNSTPTSKTSIDVLPKGLNVGLVNGTVDIPGIGKVLDLKVL 535

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHD 311
             AL+       L+ P L  +  ++AS   G    + T S  TG          +V   +
Sbjct: 536 ARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREE 595

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            G+ L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL 
Sbjct: 596 VGLKLNVRPQISEGGTVKLDIYQEVSTVDTRASVDAGTVTNKRAIDTSILLDDGQIMVLG 655

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRP 430
           GLL+D   Q  + +P LS IP LGALFRN + +  +T + +   P++++   A R ++  
Sbjct: 656 GLLQDGYSQSNDAVPWLSDIPGLGALFRNEKRSVNKTNLMVFLRPYIIRDSGAGRSITLN 715

Query: 431 DDHY 434
              +
Sbjct: 716 RYEF 719


>gi|89110685|ref|AP_004465.1| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. W3110]
 gi|90111569|ref|NP_417784.4| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. MG1655]
 gi|170082844|ref|YP_001732164.1| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238902416|ref|YP_002928212.1| general secretory pathway component, cryptic [Escherichia coli
           BW2952]
 gi|256025947|ref|ZP_05439812.1| general secretory pathway component, cryptic [Escherichia sp.
           4_1_40B]
 gi|300932218|ref|ZP_07147497.1| general secretion pathway protein D [Escherichia coli MS 187-1]
 gi|300946547|ref|ZP_07160812.1| general secretion pathway protein D [Escherichia coli MS 116-1]
 gi|300954740|ref|ZP_07167173.1| general secretion pathway protein D [Escherichia coli MS 175-1]
 gi|301643855|ref|ZP_07243886.1| general secretion pathway protein D [Escherichia coli MS 146-1]
 gi|14917006|sp|P45758|GSPD_ECOLI RecName: Full=Probable general secretion pathway protein D; Flags:
           Precursor
 gi|85676716|dbj|BAE77966.1| general secretory pathway component, cryptic [Escherichia coli str.
           K12 substr. W3110]
 gi|87082242|gb|AAC76350.2| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169890679|gb|ACB04386.1| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238861291|gb|ACR63289.1| general secretory pathway component, cryptic [Escherichia coli
           BW2952]
 gi|260447656|gb|ACX38078.1| general secretion pathway protein D [Escherichia coli DH1]
 gi|300318291|gb|EFJ68075.1| general secretion pathway protein D [Escherichia coli MS 175-1]
 gi|300453793|gb|EFK17413.1| general secretion pathway protein D [Escherichia coli MS 116-1]
 gi|300460042|gb|EFK23535.1| general secretion pathway protein D [Escherichia coli MS 187-1]
 gi|301077758|gb|EFK92564.1| general secretion pathway protein D [Escherichia coli MS 146-1]
 gi|309703737|emb|CBJ03078.1| probable general secretion pathway protein D precursor [Escherichia
           coli ETEC H10407]
 gi|315618942|gb|EFU99525.1| general secretion pathway protein D [Escherichia coli 3431]
          Length = 650

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q        V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 325 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 383

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 384 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 443

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 444 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 503

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PLL
Sbjct: 504 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 563

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 564 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 623

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 624 KALVGSEDLPVLDENTFN 641


>gi|331684967|ref|ZP_08385553.1| general secretion pathway protein D [Escherichia coli H299]
 gi|331077338|gb|EGI48550.1| general secretion pathway protein D [Escherichia coli H299]
          Length = 654

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q        V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 329 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 387

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 388 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 447

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 448 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 507

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PLL
Sbjct: 508 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 567

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 568 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 627

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 628 KALVGSEDLPVLDENTFN 645


>gi|157162799|ref|YP_001460117.1| general secretion pathway protein D [Escherichia coli HS]
 gi|157068479|gb|ABV07734.1| general secretion pathway protein D [Escherichia coli HS]
          Length = 654

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q        V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 329 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 387

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 388 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 447

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 448 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 507

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PLL
Sbjct: 508 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 567

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 568 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYLQEQQQRIDGKS 627

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 628 KALVGSEDLPVLDENTFN 645


>gi|331674826|ref|ZP_08375583.1| general secretion pathway protein D [Escherichia coli TA280]
 gi|331067735|gb|EGI39133.1| general secretion pathway protein D [Escherichia coli TA280]
          Length = 654

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 124/337 (36%), Gaps = 24/337 (7%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +  D+       +T       +Q        V+  L+I    QV ++  I EV+      
Sbjct: 310 SAMDNVAITADEQTNSLVITADQPVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 368

Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255
           +G Q +         +++G     AA     +   GG  S     D FS           
Sbjct: 369 LGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 428

Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309
             +  +L AL        LA P++  +  + ASF  G         +T S      +V  
Sbjct: 429 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 488

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G  L  TP V     + L I+ EVS      N+   P++  R     V + +G T+V
Sbjct: 489 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 548

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++   +     
Sbjct: 549 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLS 608

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            + +     + +     +   + G ++   ++   + 
Sbjct: 609 KEKYTRYRQEQQQRIDGKSKALVGSEDLPVLDENTFN 645


>gi|26249920|ref|NP_755960.1| general secretion pathway protein D [Escherichia coli CFT073]
 gi|91212762|ref|YP_542748.1| general secretion pathway protein D [Escherichia coli UTI89]
 gi|117625603|ref|YP_858926.1| putative general secretion pathway protein D precursor [Escherichia
           coli APEC O1]
 gi|227883456|ref|ZP_04001261.1| general secretion pathway protein D precursor [Escherichia coli
           83972]
 gi|300979896|ref|ZP_07174772.1| general secretion pathway protein D [Escherichia coli MS 45-1]
 gi|301046096|ref|ZP_07193274.1| general secretion pathway protein D [Escherichia coli MS 185-1]
 gi|26110348|gb|AAN82534.1|AE016767_294 Probable general secretion pathway protein D precursor [Escherichia
           coli CFT073]
 gi|91074336|gb|ABE09217.1| probable general secretion pathway protein D [Escherichia coli
           UTI89]
 gi|115514727|gb|ABJ02802.1| putative general secretion pathway protein D precursor [Escherichia
           coli APEC O1]
 gi|227839600|gb|EEJ50066.1| general secretion pathway protein D precursor [Escherichia coli
           83972]
 gi|294492078|gb|ADE90834.1| general secretion pathway protein D [Escherichia coli IHE3034]
 gi|300301922|gb|EFJ58307.1| general secretion pathway protein D [Escherichia coli MS 185-1]
 gi|300409407|gb|EFJ92945.1| general secretion pathway protein D [Escherichia coli MS 45-1]
 gi|307628360|gb|ADN72664.1| general secretory pathway component, cryptic [Escherichia coli
           UM146]
 gi|315284600|gb|EFU44045.1| general secretion pathway protein D [Escherichia coli MS 110-3]
 gi|315292358|gb|EFU51710.1| general secretion pathway protein D [Escherichia coli MS 153-1]
 gi|323950239|gb|EGB46121.1| general secretion pathway protein D [Escherichia coli H252]
 gi|323954552|gb|EGB50335.1| general secretion pathway protein D [Escherichia coli H263]
          Length = 654

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 124/337 (36%), Gaps = 24/337 (7%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +  D+       +T       +Q        V+  L+I    QV ++  I EV+      
Sbjct: 310 SAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 368

Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255
           +G Q +         +++G     AA     +   GG  S     D FS           
Sbjct: 369 LGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 428

Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309
             +  +L AL        LA P++  +  + ASF  G         +T S      +V  
Sbjct: 429 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 488

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G  L  TP V     + L I+ EVS      N+   P++  R     V + +G T+V
Sbjct: 489 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 548

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++   +     
Sbjct: 549 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLS 608

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            + +     + +     +   + G ++   ++   + 
Sbjct: 609 KEKYTRYRQEQQLRIDGKSKALIGSEDLPVLDENTFN 645


>gi|254163253|ref|YP_003046361.1| general secretory pathway component, cryptic [Escherichia coli B
           str. REL606]
 gi|253975154|gb|ACT40825.1| general secretory pathway component, cryptic [Escherichia coli B
           str. REL606]
          Length = 650

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q        V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 325 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 383

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 384 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 443

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 444 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 503

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PLL
Sbjct: 504 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 563

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 564 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 623

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 624 KALVGSEDLPVLDENTFN 641


>gi|218560386|ref|YP_002393299.1| general secretory pathway component, cryptic [Escherichia coli S88]
 gi|218367155|emb|CAR04929.1| general secretory pathway component, cryptic [Escherichia coli S88]
 gi|307555412|gb|ADN48187.1| general secretory pathway component [Escherichia coli ABU 83972]
          Length = 650

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 124/337 (36%), Gaps = 24/337 (7%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +  D+       +T       +Q        V+  L+I    QV ++  I EV+      
Sbjct: 306 SAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 364

Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255
           +G Q +         +++G     AA     +   GG  S     D FS           
Sbjct: 365 LGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 424

Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309
             +  +L AL        LA P++  +  + ASF  G         +T S      +V  
Sbjct: 425 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 484

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G  L  TP V     + L I+ EVS      N+   P++  R     V + +G T+V
Sbjct: 485 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 544

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++   +     
Sbjct: 545 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLS 604

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            + +     + +     +   + G ++   ++   + 
Sbjct: 605 KEKYTRYRQEQQLRIDGKSKALIGSEDLPVLDENTFN 641


>gi|332304529|ref|YP_004432380.1| general secretion pathway protein D [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171858|gb|AEE21112.1| general secretion pathway protein D [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 690

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 155/434 (35%), Gaps = 83/434 (19%)

Query: 90  FGKNVGQANVILIGHDGKQMLNLD----ILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
             K+ G+ N    G D  +++  D    I++  DI      +   I   +  +E   +T 
Sbjct: 218 INKSTGKTN--ASGKDAPRVVADDRTNSIMVSGDIKA-RQRIVNLIERMDQELETNGNTR 274

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------------------------ 181
           V+       ++  + ++     +    +    +SS+                        
Sbjct: 275 VIFLKYSKAEELVKVLQGVSASIQAEEQGAAKSSSNSNRGDISIEAHEDSNALVITAQPD 334

Query: 182 -----KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----------SITGSSSGP 226
                + V+  L+I    QV ++  I EV       +G Q           S        
Sbjct: 335 MMRSLEDVIRQLDIR-RAQVQVEAIIVEVFEGDGTTVGVQWASEDYGAQQFSNGNVVGIG 393

Query: 227 SKSFAADFGGKFVSEGGDF---------------------SVKGVLDRF-------SFET 258
           S + AA+      +    F                     S+ G ++ F        +  
Sbjct: 394 SLAVAAEQASDTTTTTVGFDDDGDPYSFDETTEGDYTALASLLGGVNGFLVGAVKDGWGA 453

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTHDYG 313
           VL A+   T    L+ P LT +  + A F  G +    T S++    +     V   + G
Sbjct: 454 VLQAVSTDTNSNVLSTPHLTTLDNEEAFFIVGQEVPIITGSTTGSNNTNPFQSVERQEIG 513

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L  TP +     + L I+ EVS      +   +     R+  T V +  GGTIVL GL
Sbjct: 514 IKLKVTPQINEGNAVQLLIEQEVSSISGATSVDIL--INKREIKTNVIVDDGGTIVLGGL 571

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDD 432
           + DD+Q+    +P+L  IP +G LF+++  ++ +  + +   P +++  V   D+SR   
Sbjct: 572 IDDDVQESVSKVPILGDIPFIGNLFKSTTTSKSKRNLMVFIRPTIIRDGVTANDISRKKY 631

Query: 433 HYSVEDDAKAFFFN 446
           +Y   +  K     
Sbjct: 632 NYIRAEQLKRQSEG 645


>gi|206575908|ref|YP_002236236.1| protein transporter HofQ [Klebsiella pneumoniae 342]
 gi|206564966|gb|ACI06742.1| protein transporter HofQ [Klebsiella pneumoniae 342]
          Length = 413

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G +  +  +   P      + ++D      S    F++ G 
Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAETGGSPGSGQITTLSSDMSVNDASTRAGFNI-GK 239

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 240 INGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 299

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GR+ L+++   + P  V+  + G+  +   ++ +T VE+ SG T+
Sbjct: 300 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETL 359

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 360 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410


>gi|110643564|ref|YP_671294.1| general secretion pathway protein D precursor [Escherichia coli
           536]
 gi|191171536|ref|ZP_03033084.1| general secretion pathway protein D [Escherichia coli F11]
 gi|300974004|ref|ZP_07172411.1| general secretion pathway protein D [Escherichia coli MS 200-1]
 gi|331649123|ref|ZP_08350209.1| general secretion pathway protein D [Escherichia coli M605]
 gi|331659615|ref|ZP_08360553.1| general secretion pathway protein D [Escherichia coli TA206]
 gi|110345156|gb|ABG71393.1| probable general secretion pathway protein D precursor [Escherichia
           coli 536]
 gi|190908163|gb|EDV67754.1| general secretion pathway protein D [Escherichia coli F11]
 gi|281180360|dbj|BAI56690.1| general secretion pathway protein D [Escherichia coli SE15]
 gi|300309014|gb|EFJ63534.1| general secretion pathway protein D [Escherichia coli MS 200-1]
 gi|312947876|gb|ADR28703.1| general secretion pathway protein D precursor [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315298623|gb|EFU57878.1| general secretion pathway protein D [Escherichia coli MS 16-3]
 gi|324009016|gb|EGB78235.1| general secretion pathway protein D [Escherichia coli MS 57-2]
 gi|324014941|gb|EGB84160.1| general secretion pathway protein D [Escherichia coli MS 60-1]
 gi|330909367|gb|EGH37881.1| general secretion pathway protein D [Escherichia coli AA86]
 gi|331041621|gb|EGI13765.1| general secretion pathway protein D [Escherichia coli M605]
 gi|331052830|gb|EGI24863.1| general secretion pathway protein D [Escherichia coli TA206]
          Length = 654

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 123/337 (36%), Gaps = 24/337 (7%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +  D+       +T       +Q        V+  L+I    QV ++  I EV+      
Sbjct: 310 SAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 368

Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255
           +G Q +         +++G     AA     +   GG  S     D FS           
Sbjct: 369 LGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 428

Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309
             +  +L AL        LA P++  +  + ASF  G         +T S      +V  
Sbjct: 429 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 488

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G  L  TP V     + L I+ EVS      N+   P++  R     V + +G T+V
Sbjct: 489 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 548

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++   +     
Sbjct: 549 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLS 608

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            + +     + +     +   + G ++   +    + 
Sbjct: 609 KEKYTRYRQEQQLRIDGKSKALVGSEDLPVLNENTFN 645


>gi|261493374|ref|ZP_05989900.1| competence protein E [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496640|ref|ZP_05993020.1| competence protein E [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307843|gb|EEY09166.1| competence protein E [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311018|gb|EEY12195.1| competence protein E [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 437

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 112/261 (42%), Gaps = 15/261 (5%)

Query: 175 QYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSG------- 225
           + +  S K + NL+    +   Q+ ++  I  +  + L+++G +  I    +G       
Sbjct: 165 KDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGR 224

Query: 226 ----PSKSFAADFGGKFVSEGGDFSVKGV--LDRFSFETVLHALERATAIRTLAEPTLTA 279
                      +    F   GG  +V  V  ++    +  L ALE+  ++  +A P L  
Sbjct: 225 LEGNGLNDVTNNLNVNFPITGGASAVLQVASINSRVLDLELSALEQENSVEIIASPRLLT 284

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            + + AS   G +  Y   ++ + AT V   +  + L   P + +  +I L +    + P
Sbjct: 285 TNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLGLEVVPHLSTQNQILLDLIVTQNSP 344

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                +  + +   ++ +T V    G TIVL G+ +   Q+ ++ +P+L  IP +  LF 
Sbjct: 345 NSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPILGSIPFIKRLFS 404

Query: 400 NSRFNREETEIFIAATPFLVK 420
            +R    + E+ I  TP++++
Sbjct: 405 QTRDKISKRELVIFVTPYILQ 425


>gi|218691610|ref|YP_002399822.1| general secretory pathway component, cryptic [Escherichia coli
           ED1a]
 gi|218429174|emb|CAR10129.2| general secretory pathway component, cryptic [Escherichia coli
           ED1a]
 gi|222035034|emb|CAP77777.1| general secretion pathway protein D [Escherichia coli LF82]
          Length = 650

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 123/337 (36%), Gaps = 24/337 (7%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +  D+       +T       +Q        V+  L+I    QV ++  I EV+      
Sbjct: 306 SAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 364

Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255
           +G Q +         +++G     AA     +   GG  S     D FS           
Sbjct: 365 LGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 424

Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309
             +  +L AL        LA P++  +  + ASF  G         +T S      +V  
Sbjct: 425 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 484

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G  L  TP V     + L I+ EVS      N+   P++  R     V + +G T+V
Sbjct: 485 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 544

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++   +     
Sbjct: 545 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLS 604

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            + +     + +     +   + G ++   +    + 
Sbjct: 605 KEKYTRYRQEQQLRIDGKSKALVGSEDLPVLNENTFN 641


>gi|152968741|ref|YP_001333850.1| pullulanase D protein [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238893139|ref|YP_002917873.1| pullulanase-specific type II secretion system secretin [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150953590|gb|ABR75620.1| Pullulanase D protein [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238545455|dbj|BAH61806.1| pullulanase-specific type II secretion system secretin [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 657

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 135/355 (38%), Gaps = 45/355 (12%)

Query: 146 VLHGMVRTIQDSQR------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----- 194
           VL G+  ++Q  ++      A++ +    +    N    +++  VMN L           
Sbjct: 282 VLTGISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 341

Query: 195 -QVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGGKFVSEGGDF-- 245
            QV ++  IAEV+      +G Q +         ++SG   S A     ++  +G     
Sbjct: 342 PQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSS 401

Query: 246 ---------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                     +     + ++  +L AL  +T    LA P++  +    A+F  G +    
Sbjct: 402 LASALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVL 461

Query: 297 TVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---P 349
           T S +T       +V     G+ L   P +     + L I+ EVS      ++       
Sbjct: 462 TGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGA 521

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R  +  V + SG T+V+ GLL   +    + +PLL  IP++GALFR+      +  
Sbjct: 522 TFNTRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRN 581

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           + +   P +++           D Y      +   FN        KE+SE    N
Sbjct: 582 LMLFIRPTIIRD---------RDEYRQASSGQYTAFNNAQTKQRGKESSEASLSN 627


>gi|119476010|ref|ZP_01616362.1| type II and III secretion system protein [marine gamma
           proteobacterium HTCC2143]
 gi|119450637|gb|EAW31871.1| type II and III secretion system protein [marine gamma
           proteobacterium HTCC2143]
          Length = 630

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 22/298 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------QVTLK 199
           +L  + ++IQ +Q+  + + +  +    N    ++   ++  +            QV ++
Sbjct: 281 ILENLAKSIQSNQKDTDSNISIEASKSANALVINAPPSILTTMKSIISQLDIRRAQVMVE 340

Query: 200 VTIAEVRRDILKQIGFQH---------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             + EVR ++   +G                +      + A   G       G     G 
Sbjct: 341 AILVEVRGELASDVGVTWITDPDNSIVGAVNTLGNLPLANAPSDGSALPFSAGRGFTFGY 400

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-------SSSTG 303
            +    +  L AL        L+ PT+ AI  + AS   G    + T        S++  
Sbjct: 401 FNGGDLQAALRALSATQNANILSTPTIVAIDNEEASLLVGQNVPFITGQATSSASSTNDP 460

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            T++   D G  L  TP +     I L I  +       ++         R+  T   + 
Sbjct: 461 FTTIERQDIGTSLVVTPRINQGDSITLEIHQKTETIAPSIDIASDIVTNKREIITKALIR 520

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
               +V+ GL+ D+  ++ E +PLL  IP LG+LF +   +  +T + +   P ++K 
Sbjct: 521 DDQVLVIGGLINDEETEIIEKVPLLGDIPYLGSLFSSKGTSHTKTNLMVFIHPTILKD 578


>gi|330010541|ref|ZP_08306775.1| general secretion pathway protein D [Klebsiella sp. MS 92-3]
 gi|328534526|gb|EGF61113.1| general secretion pathway protein D [Klebsiella sp. MS 92-3]
          Length = 657

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 135/355 (38%), Gaps = 45/355 (12%)

Query: 146 VLHGMVRTIQDSQR------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----- 194
           VL G+  ++Q  ++      A++ +    +    N    +++  VMN L           
Sbjct: 282 VLTGISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 341

Query: 195 -QVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGGKFVSEGGDF-- 245
            QV ++  IAEV+      +G Q +         ++SG   S A     ++  +G     
Sbjct: 342 PQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSS 401

Query: 246 ---------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                     +     + ++  +L AL  +T    LA P++  +    A+F  G +    
Sbjct: 402 LASALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVL 461

Query: 297 TVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---P 349
           T S +T       +V     G+ L   P +     + L I+ EVS      ++       
Sbjct: 462 TGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGA 521

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R  +  V + SG T+V+ GLL   +    + +PLL  IP++GALFR+      +  
Sbjct: 522 TFNTRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRN 581

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           + +   P +++           D Y      +   FN        KE+SE    N
Sbjct: 582 LMLFIRPTIIRD---------RDEYRQASSGQYTAFNNAQTKQRGKESSEASLSN 627


>gi|320323732|gb|EFW79816.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 775

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 117/308 (37%), Gaps = 21/308 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206
           G     +    +  ++    S     +   +  K++ + +        QV ++  I EV 
Sbjct: 455 GANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 514

Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258
                 +G Q  +     +SG + +     G +     G  ++      F      + + 
Sbjct: 515 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 574

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312
            L ALE     + L+ P+L  ++ Q A    G              S++T  +SV     
Sbjct: 575 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 634

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIV 369
           GV+L   P +   G + + IQ +VS      N  D    P    R   T V   SG T++
Sbjct: 635 GVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAQSGQTVL 694

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++   +     +
Sbjct: 695 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQ 752

Query: 430 PDDHYSVE 437
             D Y  +
Sbjct: 753 VTDDYRQQ 760


>gi|288933223|ref|YP_003437282.1| type IV pilus secretin PilQ [Klebsiella variicola At-22]
 gi|288887952|gb|ADC56270.1| type IV pilus secretin PilQ [Klebsiella variicola At-22]
          Length = 412

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G +  +  +   P      + ++D      S    F++ G 
Sbjct: 180 QVELAAHIVSMSETSLRELGVKWRLAEAGGSPGSGQITTLSSDMSVNDASTRAGFNI-GK 238

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 239 INGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 298

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GR+ L+++   + P  V+  + G+  +   ++ +T VE+ SG T+
Sbjct: 299 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETL 358

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 359 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 409


>gi|262044789|ref|ZP_06017834.1| general secretion pathway protein D [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037872|gb|EEW39098.1| general secretion pathway protein D [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 657

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 134/352 (38%), Gaps = 45/352 (12%)

Query: 146 VLHGMVRTIQDSQR------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----- 194
           VL G+  ++Q  ++      A++ +    +    N    +++  VMN L           
Sbjct: 282 VLTGISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 341

Query: 195 -QVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGGKFVSEGGDF-- 245
            QV ++  IAEV+      +G Q +         ++SG   S A     ++  +G     
Sbjct: 342 PQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSS 401

Query: 246 ---------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                     +     + ++  +L AL  +T    LA P++  +    A+F  G +    
Sbjct: 402 LASALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVL 461

Query: 297 TVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---P 349
           T S +T       +V     G+ L   P +     + L I+ EVS      ++       
Sbjct: 462 TGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGA 521

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R  +  V + SG T+V+ GLL   +    + +PLL  IP++GALFR+      +  
Sbjct: 522 TFNTRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRN 581

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           + +   P +++           D Y      +   FN        KE+SE  
Sbjct: 582 LMLFIRPTIIRD---------RDEYRQASSGQYTAFNNAQTKQRGKESSEAS 624


>gi|126665040|ref|ZP_01736023.1| Type II secretory pathway, component PulD [Marinobacter sp. ELB17]
 gi|126630410|gb|EBA01025.1| Type II secretory pathway, component PulD [Marinobacter sp. ELB17]
          Length = 640

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 112/269 (41%), Gaps = 29/269 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--- 235
             +++++  L+I    QV ++  I E+  ++ +Q+G Q +    SSG       +     
Sbjct: 327 QEAEQIVMALDIR-RAQVMIEAAIVEISENMGEQLGVQLAAGDESSGGFPVLGTNLASGG 385

Query: 236 --------------GKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLT 278
                         G   +  G  +        +  ++  ++ AL  ++A   L+ P++ 
Sbjct: 386 MLGLNQVISAVLGDGTVPALAGGLTAGAGDRNRNGVTWGLLIQALSTSSAANLLSTPSII 445

Query: 279 AISGQSASFTSGGQHLYKTVSS-------STGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            +  Q +    G    ++T  +       +   T++   D G+ L  TPT+ + G + L 
Sbjct: 446 TLDNQESEIIVGQNVPFRTGQAAVSGEGLTNPFTTIERRDVGLTLKVTPTISADGLVRLV 505

Query: 332 IQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           ++      V    AG        R+  TTV    G TIVL GL+KDD +  K  +PLL  
Sbjct: 506 VEQTTENVVPTTVAGASDLITNKREIKTTVLADDGETIVLGGLMKDDYEVQKSKVPLLGD 565

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP LG LF +   +R +  + +   P ++
Sbjct: 566 IPYLGRLFSSESESRVKRNLLVFLRPTIM 594


>gi|301064256|ref|ZP_07204699.1| general secretion pathway protein D [delta proteobacterium NaphS2]
 gi|300441701|gb|EFK06023.1| general secretion pathway protein D [delta proteobacterium NaphS2]
          Length = 694

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 117/298 (39%), Gaps = 27/298 (9%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G    I    R V    T       +       ++V+  L+I     V ++  I EV  +
Sbjct: 356 GKAPLISKEARIVADQATNSLVIMADPDDYMILEEVIQKLDIP-RMMVFIEALIMEVNVN 414

Query: 209 ILKQIGFQH--------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248
               +G +               +  GSS G   + +   G   + +G    V       
Sbjct: 415 KDFNLGVEWEGVKTFTYDGKDAAAFAGSSPGNFDTISGVVGKGTLPQGFSMGVITDTIEI 474

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---- 304
             +   +   V++A ++   +  L+ P L     + A    G    Y+    +T A    
Sbjct: 475 AGVKFPNLAAVVNAYQQDRDVHILSTPQLLTTDNEEAEIMVGRNVPYQVRQETTAAELDY 534

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVEL 362
           +S    D GV L  TP +     + L+I  EV+  V    + A D P    R A TTV +
Sbjct: 535 SSYEYKDVGVTLKVTPQISLERSVRLKIYQEVTRLVDNNALTASDRPETYKRLAQTTVIV 594

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               T+V+ GL+ DD    +  +P L  IP++G LF+ +   RE+T +FI  TP +++
Sbjct: 595 KDANTVVIGGLIGDDTTHTEYKVPCLGDIPLVGWLFKGTSKKREKTNLFIFLTPRIIQ 652


>gi|291086346|ref|ZP_06355526.2| hypothetical protein CIT292_10180 [Citrobacter youngae ATCC 29220]
 gi|291067951|gb|EFE06060.1| protein transport protein HofQ [Citrobacter youngae ATCC 29220]
          Length = 386

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 13/278 (4%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTIAEVRR 207
            +  ++ +    +       N+     +  V+N L           +QV L   I  +  
Sbjct: 107 AKAGEKLLSAKGSMTVDKRTNRILLRDNSVVLNALEKWVAQMDLPVEQVELAAHIVTINE 166

Query: 208 DILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
             L+++G + S+  +      G   + A+D      +    F++ G ++    E  L AL
Sbjct: 167 KSLRELGVKWSLADAQQPGAVGNVTTLASDLSVSAATSRVGFNI-GRINARLLELELSAL 225

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL
Sbjct: 226 EQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVL 285

Query: 324 SPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
             GRI L++    + P  V+    G++ +   ++ +T VE+ SG TI L G+     +  
Sbjct: 286 QKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETIALGGIFSHKNKAA 345

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +PLL  IP LG+LFR+     E  E+ +  TP LV
Sbjct: 346 ADSVPLLGDIPWLGSLFRHDGKEDERRELVVFITPRLV 383


>gi|332143347|ref|YP_004429085.1| general secretion pathway protein D [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553369|gb|AEB00088.1| general secretion pathway protein D [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 681

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 110/286 (38%), Gaps = 45/286 (15%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------- 217
           S ++V+  L+I    QV ++  I EV       +G Q                       
Sbjct: 335 SLEEVVRQLDIR-RAQVQVEAIIVEVFEGDGNTLGVQWVSEEGGGTQFNNGVIGVGSLAV 393

Query: 218 ---------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                          +  G     + +   DF       GG   +   +    +  V+ A
Sbjct: 394 ALRQAEDRETTQTNITANGEVVETTDTIEGDFTALASLLGGANGLIAGVIENGWGAVVQA 453

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317
           +   T    LA P LT +  + A F  G +    T +++         +V   + G+ L 
Sbjct: 454 VSTDTNSNILATPHLTTMDNEEAFFIVGQEVPIITGTTTGSNNSNPFQTVDRQEVGIKLK 513

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP +     + L I+ EVS      +     S   R+  TTV +  GGTIVL GL+ +D
Sbjct: 514 VTPQINEGDAVQLLIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDED 571

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +Q+    +PLL  IP+LG LF+ +  ++ +  + +   P +V+  A
Sbjct: 572 VQESVSKVPLLGDIPVLGHLFKTTSTSKRKRNLMVFLKPTIVRDGA 617


>gi|311105841|ref|YP_003978694.1| general secretion pathway protein D [Achromobacter xylosoxidans A8]
 gi|310760530|gb|ADP15979.1| general secretion pathway protein D [Achromobacter xylosoxidans A8]
          Length = 790

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 120/292 (41%), Gaps = 31/292 (10%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGG 236
           S ++V++ L+     QV ++  I EV      + G Q    +   +S G S     + GG
Sbjct: 411 SLREVIDQLDQR-RAQVLVESLIVEVSEAKAAEFGIQWMTGAGNINSDGTSFIGGTNLGG 469

Query: 237 KFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTA 279
             ++  G  ++ G+                     +   +  A+E       L+ P L  
Sbjct: 470 SGITGKGPTTIDGIGSGLTLGVVKGTVDVLGNKVINLGVLARAMENTGEANILSTPNLLT 529

Query: 280 ISGQSASFTSGGQHLYKT----VSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +  QSAS   G    + T     S S G+T    ++   D G+ L+  P +   G + L 
Sbjct: 530 LDNQSASILVGKTVPFVTGQYVTSGSNGSTNPFQTIEREDVGLKLNIRPQISEGGAVKLD 589

Query: 332 IQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           I  EVS       NA        R  DT+V +  G  IVL GLL+D++      +PLL  
Sbjct: 590 IYQEVSSIDESRSNATTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLSTNSVPLLGS 649

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           +P++G+LFR     R +T + +   P++V+  A R      D Y     A+A
Sbjct: 650 LPVIGSLFRYDSRKRTKTNLMVFLRPYVVRD-ANRTAGVTMDRYDYMRRAQA 700


>gi|222111308|ref|YP_002553572.1| type II and iii secretion system protein [Acidovorax ebreus TPSY]
 gi|221730752|gb|ACM33572.1| type II and III secretion system protein [Acidovorax ebreus TPSY]
          Length = 356

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 99/361 (27%), Positives = 165/361 (45%), Gaps = 23/361 (6%)

Query: 104 HDGKQMLNLDILIERDI-AHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
            +G Q+ N ++ +  D  A   M LR+ ++    I V  V D VVL GM      + +  
Sbjct: 5   RNGTQI-NYEVTVSADHHAKTAMELRQLLSHDKGINVSAVGDKVVLDGMYANQDSAAKIQ 63

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           ++ + +       Q  N   ++  + L +  E  V L V + EVR+  L  IG + S  G
Sbjct: 64  KIVKAY------PQVLNLVRERPEDQLVVP-EQMVQLDVKVVEVRKQALDNIGVKWSNLG 116

Query: 222 ------SSSGPSKSFAADFGGK-----FVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
                 ++SG   + +A+F G       ++      +  +       +VL+ LE      
Sbjct: 117 VAGPTFATSGYFYANSANFRGLNQEGYPITTPARPFISYLGLATQITSVLNFLESNGDSW 176

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           TLAEP ++++SG S+    GG+     VSS  G  SV    YGV+L F P +   G +  
Sbjct: 177 TLAEPRISSVSGGSSKVQVGGEIPIP-VSSGFGQLSVVYKPYGVILEFKPVIDKAGNVRS 235

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            I  EVS+P      G   ++   + +T V L    T+V++GLLK    + KEGIP++ +
Sbjct: 236 SIVAEVSQPDRSAGQGQFVAFTTNRTETEVSLKQNETLVISGLLKSVGARNKEGIPVIGR 295

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH-YSVEDDAKAFFFNRVN 449
            P+LG LF       E+TE+ +  TP +  P A R      ++ Y   ++ K    +++ 
Sbjct: 296 APVLGRLFSTQEMTNEQTEMLVVVTPRIHTPAADRAQVLASENAYQRLNEVKDMIESKLA 355

Query: 450 K 450
           +
Sbjct: 356 R 356


>gi|73542815|ref|YP_297335.1| type II and III secretion system secretin [Ralstonia eutropha
           JMP134]
 gi|72120228|gb|AAZ62491.1| type II and III secretion system protein:NolW-like:Secretin/TonB,
           short N-terminal [Ralstonia eutropha JMP134]
          Length = 706

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 101/257 (39%), Gaps = 23/257 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------S 222
           +  +N ++I    QV ++  I E      + +G +    G                   S
Sbjct: 447 QGFLNKIDIP-VRQVIIEARIVEATDTFSRNLGVKLGFAGQYNNARVGNTYSNVLPGANS 505

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +GP  S  A             S+            L ALE     + ++ P +   + 
Sbjct: 506 DNGPFLSLPAGAINGTNPANIAVSIFNSAATRFLALELSALEADGKGKIISSPRVVTANN 565

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
             A    G +  Y+  +SS GATSV      + L  TP +   G + L +  +V++  +G
Sbjct: 566 IKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVTPQITPEGNVLLDV--DVNKDSVG 622

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +      +   +   T V + +GGT+V+ G+         + +P L  IP+LG LF+N+ 
Sbjct: 623 IQTTSGFAIDTKHVQTQVLVDNGGTVVIGGIYTQTESTDVDKVPFLGDIPVLGYLFKNNA 682

Query: 403 FNREETEIFIAATPFLV 419
             R  TE+ +  TP ++
Sbjct: 683 KVRNRTELLVFLTPRVL 699


>gi|262170433|ref|ZP_06038111.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus MB-451]
 gi|261891509|gb|EEY37495.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus MB-451]
          Length = 567

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  V+   L ++G +  +  ++   S              
Sbjct: 304 REIIESLDIP-VKQVQIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGL 362

Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +      +     F V  +      +  L AL+  +    ++ P L
Sbjct: 363 LAEDEFPVDEFLNVNLASTSANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRL 422

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A    G +  Y   SSS+GAT+V+     + L  TP +    R+ L +     
Sbjct: 423 ITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQD 481

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LG
Sbjct: 482 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 541

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR +     ++E+ I  TP +V
Sbjct: 542 ALFRRTYEQMGKSELLIFVTPKVV 565


>gi|239995641|ref|ZP_04716165.1| general secretion pathway protein D [Alteromonas macleodii ATCC
           27126]
          Length = 683

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 111/286 (38%), Gaps = 45/286 (15%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S ++V+  L+I    QV ++  I EV       +G Q +          +     G   V
Sbjct: 335 SLEEVVRQLDIR-RAQVQVEAIIVEVFEGDGTTLGVQWASEAGGGTQFSNGVVPVGSLAV 393

Query: 240 S-------------------------------------EGGDFSVKGVLDRFSFETVLHA 262
           +                                      GG   +   +    +  V+ A
Sbjct: 394 ALKQAEDDTDTEAYVTDDGEVVTVNTTDEGDYTALASLLGGANGLIAGVIENGWGAVVQA 453

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317
           +   T    LA P LT +  + A F  G +    T +++         +V   + G+ L 
Sbjct: 454 VSTDTNSNILATPHLTTMDNEEAFFIVGQEVPIITGTTTGANNSNPFQTVDRQEVGIKLK 513

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP +     + L I+ EVS      +     S   R+  TTV +  GGTIVL GL+ +D
Sbjct: 514 VTPQINEGDAVQLLIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDED 571

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +Q+ +  +PLL  IPILG LF+++  ++ +  + +   P +V+  A
Sbjct: 572 VQESESKVPLLGDIPILGHLFKSTSTSKRKRNLMVFLKPTIVRDGA 617


>gi|328471682|gb|EGF42559.1| general secretion pathway protein D [Vibrio parahaemolyticus 10329]
          Length = 674

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 26/317 (8%)

Query: 132 ADSNIRVEMVSDTVVLHG---------MVRTIQDSQRAVELSETFLSQSGRN-------Q 175
            +  I     ++++VL            V +  D +RA  L E  + +           Q
Sbjct: 306 GEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDIRRAQVLIEALIVEMAEGDGINLGVQ 365

Query: 176 YANSSSKKVMNLLNIAGED-QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
           + +  +  V+   N      QV +     E  +D+ K   + +S T        +   D+
Sbjct: 366 WGSLETGAVIQYGNTGAPIGQVMVG---LEEAKDVTKTESYWNSDTNKWENRQYTEEGDY 422

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                + GG       +    +  ++ A+   +    L+ P++T +    ASF  G +  
Sbjct: 423 STLASALGGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSITVMDNGEASFIVGEEVP 482

Query: 295 YKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
             T S++         +V   + G+ L   P +     + L I+ EVS  V+G N     
Sbjct: 483 VITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDV 541

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
            +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LF+++    E+  
Sbjct: 542 RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHLFKSTSTQTEKRN 601

Query: 410 IFIAATPFLVKPVAMRD 426
           + +   P +++     D
Sbjct: 602 LMVFIKPTIIRDGMTAD 618


>gi|258620495|ref|ZP_05715533.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM573]
 gi|258587374|gb|EEW12085.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM573]
          Length = 572

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  V+   L ++G +  +  ++   S              
Sbjct: 309 REIIESLDIP-VKQVQIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGL 367

Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +      +     F V  +      +  L AL+  +    ++ P L
Sbjct: 368 LAEDEFPVDEFLNVNLASTSANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRL 427

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A    G +  Y   SSS+GAT+V+     + L  TP +    R+ L +     
Sbjct: 428 ITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQD 486

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LG
Sbjct: 487 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 546

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR +     ++E+ I  TP +V
Sbjct: 547 ALFRRTYEQMGKSELLIFVTPKVV 570


>gi|52841166|ref|YP_094965.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628277|gb|AAU27018.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 698

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 114/263 (43%), Gaps = 28/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------GSSSGPS-------- 227
           ++++  L+I    QV ++  I EV +D  + IG +  ++      G+  G +        
Sbjct: 421 RELIKQLDIP-VKQVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAP 479

Query: 228 -------KSFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276
                  +    D     ++     SV   L + +     +  L ALE       ++ P 
Sbjct: 480 ANVVPLERRLNLDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPR 539

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L   + Q+A   SG +  Y+  +SS GAT+V      + L  TP +   G+I + +Q   
Sbjct: 540 LITTNQQAAVIESGEEIPYQEATSS-GATAVAFKKAVLSLKVTPQITPDGKILMDLQINQ 598

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
             P      G +P+   ++  T V + +G TIVL G+ K D  ++   IP   ++P++G 
Sbjct: 599 DTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGI 657

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LF N +   +  E+ I  TP ++
Sbjct: 658 LFSNRQITLKNEELLIFITPRII 680


>gi|119776501|ref|YP_929241.1| type IV pilus biogenesis protein PilQ [Shewanella amazonensis SB2B]
 gi|119769001|gb|ABM01572.1| type IV pilus biogenesis protein PilQ [Shewanella amazonensis SB2B]
          Length = 685

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 108/260 (41%), Gaps = 24/260 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++ +L+I    QV ++  +  V+ ++ + +G +  +T        S            
Sbjct: 424 QRMIEVLDIPI-RQVLIESRMVTVKDNVAEDLGIRWGVTDQQGTKGTSGSLEGAESIAGG 482

Query: 230 --------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                      +      +    F V  + D    +  L ALE+      +A P +T  +
Sbjct: 483 VIPAISDRLNVNLPAPTNAASIAFHVAKLADGTVLDMELSALEQENKGEIIASPRITTSN 542

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--P 339
            ++A    G +  Y + SSS G+T+V      + L  TP +    R+ L ++        
Sbjct: 543 QKAAYIEQGVEIPYVSASSS-GSTTVEFKKAVLSLRVTPQITPDNRVILDLEITQDSRGE 601

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            +    G   +   ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFR
Sbjct: 602 TVDTATGRAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFR 661

Query: 400 NSRFNREETEIFIAATPFLV 419
           N+    E  E+ I  TP +V
Sbjct: 662 NTSDKNERQELLIFVTPKIV 681


>gi|193076133|gb|ABO10746.2| putative general secretion pathway protein [Acinetobacter baumannii
           ATCC 17978]
          Length = 758

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 119/312 (38%), Gaps = 47/312 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440

Query: 242 G---------------------GDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276
                                 G+ +  G+ +  +    +  ++ AL+  T    L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +T +T      +V   D GV L   P +   G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD    ++GIP LS 
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           IP +G LFR+   +  +  + +   P +V                  +D +     R N+
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 665

Query: 451 IYGPKEASEVEG 462
           +Y  + A +  G
Sbjct: 666 LYSLQLAMDKNG 677


>gi|169797464|ref|YP_001715257.1| putative general secretion pathway protein [Acinetobacter baumannii
           AYE]
 gi|184156612|ref|YP_001844951.1| Type II secretory pathway, component PulD [Acinetobacter baumannii
           ACICU]
 gi|213155722|ref|YP_002317767.1| general secretion pathway protein D [Acinetobacter baumannii
           AB0057]
 gi|215484901|ref|YP_002327140.1| general secretion pathway protein D [Acinetobacter baumannii
           AB307-0294]
 gi|301347975|ref|ZP_07228716.1| general secretion pathway protein D [Acinetobacter baumannii AB056]
 gi|301510797|ref|ZP_07236034.1| general secretion pathway protein D [Acinetobacter baumannii AB058]
 gi|301596692|ref|ZP_07241700.1| general secretion pathway protein D [Acinetobacter baumannii AB059]
 gi|332874904|ref|ZP_08442755.1| general secretion pathway protein D [Acinetobacter baumannii
           6014059]
 gi|169150391|emb|CAM88288.1| putative general secretion pathway protein [Acinetobacter baumannii
           AYE]
 gi|183208206|gb|ACC55604.1| Type II secretory pathway, component PulD [Acinetobacter baumannii
           ACICU]
 gi|213054882|gb|ACJ39784.1| general secretion pathway protein D [Acinetobacter baumannii
           AB0057]
 gi|213988659|gb|ACJ58958.1| general secretion pathway protein D [Acinetobacter baumannii
           AB307-0294]
 gi|322506499|gb|ADX01953.1| PulD [Acinetobacter baumannii 1656-2]
 gi|323516378|gb|ADX90759.1| Type II secretory pathway, component PulD [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332736847|gb|EGJ67823.1| general secretion pathway protein D [Acinetobacter baumannii
           6014059]
          Length = 758

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 119/312 (38%), Gaps = 47/312 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440

Query: 242 G---------------------GDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276
                                 G+ +  G+ +  +    +  ++ AL+  T    L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +T +T      +V   D GV L   P +   G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD    ++GIP LS 
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           IP +G LFR+   +  +  + +   P +V                  +D +     R N+
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 665

Query: 451 IYGPKEASEVEG 462
           +Y  + A +  G
Sbjct: 666 LYSLQLAMDKNG 677


>gi|257485212|ref|ZP_05639253.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 619

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 73/332 (21%), Positives = 128/332 (38%), Gaps = 31/332 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 269 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 325

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
               +           G    + G                 G  ++ G+ +    + +  
Sbjct: 326 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 385

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T S  TG          +V   + G
Sbjct: 386 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 445

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 446 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 505

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDD 432
           L+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++     R+++   +
Sbjct: 506 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIRDSGTGRNITL--N 563

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            Y     A+       N +    +A ++    
Sbjct: 564 RYEFMRRAQGNLRPERNWMLPDMQAPQLPSAA 595


>gi|238797288|ref|ZP_04640789.1| Protein transporter HofQ [Yersinia mollaretii ATCC 43969]
 gi|238718925|gb|EEQ10740.1| Protein transporter HofQ [Yersinia mollaretii ATCC 43969]
          Length = 406

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            Q+ L   I  + R+ L+++G +  +     ++S     F  +      +    F+V  +
Sbjct: 175 QQIQLAAHIVTMSRENLQELGVRWGMGEPPHTTSLRVNDFNVNLPLANSAVSAGFNVARI 234

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +    E+   +  +A P L A   Q+AS   G    Y       GA S+   
Sbjct: 235 GGRLLELELSAL-EQENQVDIIASPRLVASHQQTASIKQGSDIPYTVSRGEKGAASIEFK 293

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +  GD  +     ++  T + +  G TI
Sbjct: 294 EAVLGMEVTPKILRNGKITLNLKISQNMPGMTIKRGDTEALLIDKQEIKTQITVNDGETI 353

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +    Q    +P+L+ IP LGALF+     +   E+ I  TP L+
Sbjct: 354 VLGGIFQQKNSQAVNKVPILADIPWLGALFKQDAQQQNRRELVIFITPRLI 404


>gi|325265676|ref|ZP_08132365.1| type IV pilus secretin PilQ [Kingella denitrificans ATCC 33394]
 gi|324982807|gb|EGC18430.1| type IV pilus secretin PilQ [Kingella denitrificans ATCC 33394]
          Length = 705

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 96/265 (36%), Gaps = 29/265 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L++  + QV ++  I E    + + +G +       S    S            
Sbjct: 434 QRLIEELDVPAK-QVMVEARIVEAADGVARDLGVKFGANRQGSTSWGSNWGNGVEANRRY 492

Query: 230 --------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                         FA +      S     +V       +    L A+E     +T++ P
Sbjct: 493 VGNGTGSGSNGGVNFAPNVNLPVSSATSSIAVIRSWASGALGLELSAMETDNLTKTISTP 552

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +     + A    G Q  Y T   S G  + +  D  + L  TP +    +I L I   
Sbjct: 553 RVLTQDRKEAEIRQGTQIPY-TTRGSNGEVTTSFKDAILSLKVTPRITPDSKIILDITIN 611

Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
             EP    VN    P    R   T   +  GGT+V+ G+ ++ +      +P L  IP+L
Sbjct: 612 KDEPDYTRVNVEGEPGITTRAVKTQAMIEDGGTLVVGGIYQEQMSNNISKVPFLGDIPVL 671

Query: 395 GALFRNSRFNREETEIFIAATPFLV 419
           G LF++   +    E+    TP ++
Sbjct: 672 GNLFKSRSRSHTRNELLFFITPRIM 696


>gi|54293906|ref|YP_126321.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
           str. Lens]
 gi|53753738|emb|CAH15196.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
           str. Lens]
          Length = 698

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 114/263 (43%), Gaps = 28/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------GSSSGPS-------- 227
           ++++  L+I    QV ++  I EV +D  + IG +  ++      G+  G +        
Sbjct: 421 RELIKQLDIP-VKQVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAP 479

Query: 228 -------KSFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276
                  +    D     ++     SV   L + +     +  L ALE       ++ P 
Sbjct: 480 ANVVPLERRLNLDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPR 539

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L   + Q+A   SG +  Y+  +SS GAT+V      + L  TP +   G+I + +Q   
Sbjct: 540 LITTNQQAAVIESGEEIPYQEATSS-GATAVAFKKAVLSLKVTPQITPDGKILMDLQINQ 598

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
             P      G +P+   ++  T V + +G TIVL G+ K D  ++   IP   ++P++G 
Sbjct: 599 DTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGI 657

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LF N +   +  E+ I  TP ++
Sbjct: 658 LFSNRQITLKNEELLIFITPRII 680


>gi|239502032|ref|ZP_04661342.1| general secretion pathway protein D [Acinetobacter baumannii AB900]
          Length = 758

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 119/312 (38%), Gaps = 47/312 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440

Query: 242 G---------------------GDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276
                                 G+ +  G+ +  +    +  ++ AL+  T    L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +T +T      +V   D GV L   P +   G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD    ++GIP LS 
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           IP +G LFR+   +  +  + +   P +V                  +D +     R N+
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 665

Query: 451 IYGPKEASEVEG 462
           +Y  + A +  G
Sbjct: 666 LYSLQLAMDKNG 677


>gi|237703055|ref|ZP_04533536.1| general secretion pathway protein D [Escherichia sp. 3_2_53FAA]
 gi|226902319|gb|EEH88578.1| general secretion pathway protein D [Escherichia sp. 3_2_53FAA]
          Length = 654

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 124/337 (36%), Gaps = 24/337 (7%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +  D+       +T       +Q        V+  L+I    QV ++  I EV+      
Sbjct: 310 SAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 368

Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255
           +G Q +         +++G     AA     +   GG  S     D FS           
Sbjct: 369 LGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 428

Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309
             +  +L AL        LA P++  +  + ASF  G         +T S      +V  
Sbjct: 429 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 488

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
              G  L  TP V     + L I+ EVS      N+   P++  R     V + +G T+V
Sbjct: 489 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 548

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++   +     
Sbjct: 549 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTVIRDDDVYRSLS 608

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            + +     + +     +   + G ++   ++   + 
Sbjct: 609 KEKYTRYRQEQQLRIDGKSKALIGSEDLPVLDENTFN 645


>gi|239787173|emb|CAR94716.1| wmpD protein [Pseudoalteromonas ruthenica]
          Length = 688

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 116/288 (40%), Gaps = 47/288 (16%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------- 217
           S +KV+  L+I    QV ++  I EV        G Q                       
Sbjct: 340 SLEKVIERLDIR-RAQVLVEAIIVEVSEGDGVNFGLQWISEQGGMLQFNNGTTVPVGSLA 398

Query: 218 -------------SITGSSSGPSKSFA----ADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
                        ++ GS SG     +     D G      GG   +   + +  +  ++
Sbjct: 399 VAAEQARDKTITDNVVGSESGVVTPISRTEEGDLGPLASLLGGINGLAMGIVKNDWGAIV 458

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315
            A+   T    LA P++T +  + AS   G +    T SS+         +V   + GV 
Sbjct: 459 QAVSNDTNSNILATPSITTMDNEEASMIVGQEVPIITGSSTGSNNENPFQTVDRQEVGVK 518

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +     + L I+ EVS  V G  A D+ S   R   TTV    GG +VL GL+ 
Sbjct: 519 LKVTPQINDGSAVQLTIEQEVSN-VAGSTAVDI-SINKRAITTTVLADDGGMVVLGGLID 576

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +D+Q+    +PLL  IP+LG LF+++  ++ +  + +   P +++ + 
Sbjct: 577 EDVQESVSKVPLLGDIPVLGHLFKSTSTSKRKRNLIVFIRPTILRDIE 624


>gi|308047936|ref|YP_003911502.1| general secretion pathway protein D [Ferrimonas balearica DSM 9799]
 gi|307630126|gb|ADN74428.1| general secretion pathway protein D [Ferrimonas balearica DSM 9799]
          Length = 723

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 109/280 (38%), Gaps = 43/280 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+  L+I    QV ++  I E+        G Q            +F    G      
Sbjct: 344 ESVIRQLDIR-RAQVLVEAIIVEIAEGDEVGFGVQWGSADGGLIQYNTFGTTIGEVGAGI 402

Query: 236 -------------------------GKFVSEGGDFS----VKGVLDRFSFETVLHALERA 266
                                    G   +     S    +   +    F  ++ A+   
Sbjct: 403 WDARDVPGTEVCSPEGVCTTNPDQDGDITTLAAALSKVNGMAWGVAMGDFGALIQAVAAD 462

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPT 321
           +    LA P++T +  Q ASF  G +    T S+S        T+V   + G+ L  TP 
Sbjct: 463 SNSNVLATPSITTLDNQEASFIVGDEVPVITGSTSGSNNDNPFTTVERKEVGIKLKVTPQ 522

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     + L I+ EVS  V G  A D+ ++  R   TTV   SG T+VL GLL +D+Q+ 
Sbjct: 523 INEGNAVQLEIEQEVSN-VNGRTAVDV-TFGKRTLTTTVLADSGETVVLGGLLNEDVQES 580

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              +PLL  IP++G LF ++   + +  + I   P +++ 
Sbjct: 581 VSKVPLLGDIPVIGHLFSSTSSKKTKRNLMIFIKPTIIRD 620


>gi|206901782|ref|YP_002250755.1| bacterial type II and III secretion system protein [Dictyoglomus
            thermophilum H-6-12]
 gi|206740885|gb|ACI19943.1| bacterial type II and III secretion system protein [Dictyoglomus
            thermophilum H-6-12]
          Length = 1256

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 13/242 (5%)

Query: 179  SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            SS + ++  L+     QV + V + EV R+ +K IG +      S+G   +    +    
Sbjct: 1028 SSVESMIAKLDKPTP-QVKIDVQVIEVSRENIKDIGIEWGTGSISTGLQITANVGWQDLR 1086

Query: 239  VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +S         +++       + ALE     + LA+P++T +SG+S     G +    + 
Sbjct: 1087 IS---------IINPGQISANIKALESQNKAKILAQPSMTTVSGKSTRIMIGDRVPLISY 1137

Query: 299  SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
              + G   V+  D G++L+ TPTV + G I   +  +VS     V   D+P    R+A T
Sbjct: 1138 -DAQGNRQVSFVDVGIILNVTPTVNADGTITANLNPQVSTIQGYVQ--DVPIISTREAQT 1194

Query: 359  TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             V L +G T+ L GLL+ +  +    +PLL  IPILG LF+  +  + E E+ I  TP +
Sbjct: 1195 IVNLKNGETLALGGLLRQEEIESMSKVPLLGDIPILGELFKARKIQKVERELIILITPKI 1254

Query: 419  VK 420
            ++
Sbjct: 1255 IE 1256


>gi|254479855|ref|ZP_05093103.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2148]
 gi|214039417|gb|EEB80076.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2148]
          Length = 677

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 66/305 (21%), Positives = 117/305 (38%), Gaps = 45/305 (14%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------- 229
           ++ + V++ L+I    QV ++  I E+     + +G Q     + SG   S         
Sbjct: 329 AAIESVIHRLDIR-RAQVLVEAIIVEMTFSEGQDLGLQWLFANTDSGFYGSNINSPSQAQ 387

Query: 230 -----------------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
                                    A  G    + G       V D  +   +L+AL+  
Sbjct: 388 QLAGALNPDNGDEATPSNDSEFDVGALAGALASTPGLSLGWGSVDDDLTMTVILNALKTQ 447

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLH 317
                L+ P+L  +  Q A  T G    + T S +   +         ++   + G+ L 
Sbjct: 448 GNANILSTPSLLTLDNQEAFITVGQNVPFITGSYTNSGSSDGASNPFQTIERENVGITLA 507

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            TP +     + L I+ EVS  +IG   ++         RK  T V       +VL GL+
Sbjct: 508 VTPHINEGDSVVLEIEQEVSNVIIGASQISEAADIITSERKIQTKVLAQDSKVVVLGGLI 567

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +D++Q  ++ +P+L  IP LG LFR    +  +T + I   P +++  A  D +  D + 
Sbjct: 568 EDNVQDGQQKVPILGDIPFLGRLFRTDSVDVSKTNLLIFIRPTIIRDNAQLDGATADKYR 627

Query: 435 SVEDD 439
            + D 
Sbjct: 628 YIRDQ 632


>gi|157146468|ref|YP_001453787.1| hypothetical protein CKO_02228 [Citrobacter koseri ATCC BAA-895]
 gi|157083673|gb|ABV13351.1| hypothetical protein CKO_02228 [Citrobacter koseri ATCC BAA-895]
          Length = 640

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 18/272 (6%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGG 236
           +S +KV++ L+I    QV ++  IAEV+      +G Q +    G   G +         
Sbjct: 328 NSLEKVIDKLDIRRP-QVLVEAIIAEVQDGAGTDLGVQWTSKHGGVQFGATGLPIGQVKN 386

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295
             +       +        F  ++ AL        L+ P++  +  + ASF  G      
Sbjct: 387 GTIKGVNFTGMATGFFNGDFGALMTALSTNGKNDILSTPSVVTLDNKEASFNVGQDVPVL 446

Query: 296 ---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPS 350
              +T +      +V     G  L   P +     I ++I+ EVS         +   P+
Sbjct: 447 SGSQTTTGDNVFNTVERKTVGTKLKILPQINDGDMIHMKIEQEVSSVDASSTEDSSLGPT 506

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+VL GL+++  +Q    +PLL  IP++G LFR +  +  +  +
Sbjct: 507 FNTRTINNEVMVHSGQTVVLGGLIENVTKQNVSKVPLLGDIPLVGQLFRYTSQDTTKRNL 566

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
            +     +++          DD+YS     K 
Sbjct: 567 MVFIHTTVLRD---------DDNYSAASKEKY 589


>gi|238896859|ref|YP_002921604.1| outer membrane porin HofQ [Klebsiella pneumoniae NTUH-K2044]
 gi|238549186|dbj|BAH65537.1| outer membrane porin [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 414

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G +     + +   SG   + ++D      S    F++ G 
Sbjct: 182 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNI-GK 240

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 241 INGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 300

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GR+ L+++   + P  V+    G+  +   ++ +T VE+ SG T+
Sbjct: 301 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETL 360

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 361 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 411


>gi|237728710|ref|ZP_04559191.1| type II secretion system protein [Citrobacter sp. 30_2]
 gi|226909332|gb|EEH95250.1| type II secretion system protein [Citrobacter sp. 30_2]
          Length = 415

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229
           N  A ++ +K ++ +++    QV L   I  +    L+++G + S+  +      G   +
Sbjct: 163 NSVALNTLEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWSLADAQQSGAVGNVTT 221

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            A+D      +    F++ G ++    E  L ALE+   +  +A P L A   Q AS   
Sbjct: 222 LASDLSVATATSRVGFNI-GRINGRLLELELSALEQKQQLDIIASPRLLASHLQPASIKQ 280

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 281 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 340

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG TI L G+     +   + +PLL  IP LG+LFR+     E 
Sbjct: 341 VLAIDKQEIETQVEVKSGETIALGGIFSHKNKSAADSVPLLGDIPWLGSLFRHDGKEDER 400

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 401 RELVVFITPRLV 412


>gi|34979599|gb|AAQ83844.1| type IV pilus biogenesis secretin PilQ precursor [Legionella
           pneumophila 130b]
 gi|307609724|emb|CBW99235.1| type IV pilus [Legionella pneumophila 130b]
          Length = 698

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 114/263 (43%), Gaps = 28/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------GSSSGPS-------- 227
           ++++  L+I    QV ++  I EV +D  + IG +  ++      G+  G +        
Sbjct: 421 RELIKQLDIP-VKQVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAP 479

Query: 228 -------KSFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276
                  +    D     ++     SV   L + +     +  L ALE       ++ P 
Sbjct: 480 ANVVPLERRLNLDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPR 539

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L   + Q+A   SG +  Y+  +SS GAT+V      + L  TP +   G+I + +Q   
Sbjct: 540 LITTNQQAAVIESGEEIPYQEATSS-GATAVAFKKAVLSLKVTPQITPDGKILMDLQINQ 598

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
             P      G +P+   ++  T V + +G TIVL G+ K D  ++   IP   ++P++G 
Sbjct: 599 DTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGI 657

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LF N +   +  E+ I  TP ++
Sbjct: 658 LFSNRQITLKNEELLIFITPRII 680


>gi|54296952|ref|YP_123321.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
           str. Paris]
 gi|53750737|emb|CAH12144.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
           str. Paris]
          Length = 698

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 114/263 (43%), Gaps = 28/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------GSSSGPS-------- 227
           ++++  L+I    QV ++  I EV +D  + IG +  ++      G+  G +        
Sbjct: 421 RELIKQLDIP-VKQVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAP 479

Query: 228 -------KSFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276
                  +    D     ++     SV   L + +     +  L ALE       ++ P 
Sbjct: 480 ANVVPLERRLNLDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPR 539

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L   + Q+A   SG +  Y+  +SS GAT+V      + L  TP +   G+I + +Q   
Sbjct: 540 LITTNQQAAVIESGEEIPYQEATSS-GATAVAFKKAVLSLKVTPQITPDGKILMDLQINQ 598

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
             P      G +P+   ++  T V + +G TIVL G+ K D  ++   IP   ++P++G 
Sbjct: 599 DTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGI 657

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LF N +   +  E+ I  TP ++
Sbjct: 658 LFSNRQITLKNEELLIFITPRII 680


>gi|126640364|ref|YP_001083348.1| putative general secretion pathway protein [Acinetobacter baumannii
           ATCC 17978]
          Length = 667

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 119/312 (38%), Gaps = 47/312 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 291 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 349

Query: 242 G---------------------GDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276
                                 G+ +  G+ +  +    +  ++ AL+  T    L+ P+
Sbjct: 350 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 409

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +T +T      +V   D GV L   P +   G + L
Sbjct: 410 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 469

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD    ++GIP LS 
Sbjct: 470 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 529

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           IP +G LFR+   +  +  + +   P +V                  +D +     R N+
Sbjct: 530 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 574

Query: 451 IYGPKEASEVEG 462
           +Y  + A +  G
Sbjct: 575 LYSLQLAMDKNG 586


>gi|289648905|ref|ZP_06480248.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330987884|gb|EGH85987.1| general secretion pathway protein D [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 775

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 116/308 (37%), Gaps = 21/308 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206
           G     +    +  ++    S     +   +  K++ + +        QV ++  I EV 
Sbjct: 455 GANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 514

Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258
                 +G Q  +     +SG + +     G +     G  ++      F      + + 
Sbjct: 515 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 574

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312
            L ALE     + L+ P+L  ++ Q A    G              S++T  +SV     
Sbjct: 575 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 634

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIV 369
           GV+L   P +   G + + IQ +VS         D    P    R   T V   SG T++
Sbjct: 635 GVILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSGQTVL 694

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GL+K D  +    +P L +IP L  LF ++  ++  TE+ +  TP ++   +     +
Sbjct: 695 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQ 752

Query: 430 PDDHYSVE 437
             D Y  +
Sbjct: 753 VTDDYRQQ 760


>gi|289625539|ref|ZP_06458493.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330866897|gb|EGH01606.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 775

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 116/308 (37%), Gaps = 21/308 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206
           G     +    +  ++    S     +   +  K++ + +        QV ++  I EV 
Sbjct: 455 GANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 514

Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258
                 +G Q  +     +SG + +     G +     G  ++      F      + + 
Sbjct: 515 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 574

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312
            L ALE     + L+ P+L  ++ Q A    G              S++T  +SV     
Sbjct: 575 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 634

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIV 369
           GV+L   P +   G + + IQ +VS         D    P    R   T V   SG T++
Sbjct: 635 GVILDVVPRINPGGLVYMDIQQQVSTADTNSTNNDANGNPRISTRSVATQVAAQSGQTVL 694

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GL+K D  +    +P L +IP L  LF ++  ++  TE+ +  TP ++   +     +
Sbjct: 695 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQ 752

Query: 430 PDDHYSVE 437
             D Y  +
Sbjct: 753 VTDDYRQQ 760


>gi|332289551|ref|YP_004420403.1| putative outer membrane porin HofQ [Gallibacterium anatis UMN179]
 gi|330432447|gb|AEC17506.1| putative outer membrane porin HofQ [Gallibacterium anatis UMN179]
          Length = 380

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 21/258 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------P 226
           K++++ L+  G+ Q+ ++  I  +  + L ++G +  +   +                  
Sbjct: 103 KQLISQLDKPGK-QIAIEARIVTINNESLNELGVRWGMFSDADNFHKVAAKFDSFGLENL 161

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           S     +F     +      V  +  R   +  L ALE+   +  +A P L   + + AS
Sbjct: 162 SSHLNVNFSTSSEAASIALQVAKIHGRL-LDLELKALEQENNVEIIASPHLLTSNQRKAS 220

Query: 287 FTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV- 343
              G +  Y     +  +  T +   +  + L  TP VL  G I L +    +     + 
Sbjct: 221 IKQGSEIPYVIEDDTERSSRTHIEFKEAVLGLEVTPQVLHQGVISLDLVVTQNSAGASIP 280

Query: 344 -NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             AG + +   ++  + V +  G T+VL G+  D I + +  +PLL  IP LG LF +  
Sbjct: 281 YGAGQVVTIDKQEVQSQVLVRDGETVVLGGIFHDLIGKGENKVPLLGDIPGLGKLFSSKS 340

Query: 403 FNREETEIFIAATPFLVK 420
              ++ E+ I  TP ++ 
Sbjct: 341 ERHQKRELVIFITPRIIH 358


>gi|330882201|gb|EGH16350.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 216

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 115/204 (56%), Gaps = 5/204 (2%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
              S        + + +L AL+    +  LAEP +TA++GQ+ASF +GG+     V  + 
Sbjct: 1   NGISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMTGQTASFLAGGEVAVP-VPVNR 59

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADT 358
               +    YGV L F+PT+L  GRI L+++ EVS       + VN   +PS+RVR+ADT
Sbjct: 60  EVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGYQVPSFRVRRADT 119

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ SG T  +AGL + +  Q  + +P+L  +PILG LFR+ RF R ETE+ I  TP+L
Sbjct: 120 RVEVGSGQTFAIAGLFQHESSQDMDKVPMLGDMPILGNLFRSKRFQRNETELVILITPYL 179

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKA 442
           V+PV  R ++ P D       A A
Sbjct: 180 VEPVKDRVVATPLDKQRAASTASA 203


>gi|209518484|ref|ZP_03267306.1| type II and III secretion system protein [Burkholderia sp. H160]
 gi|209501117|gb|EEA01151.1| type II and III secretion system protein [Burkholderia sp. H160]
          Length = 684

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/481 (17%), Positives = 178/481 (37%), Gaps = 68/481 (14%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           +  S+ + P   +   A + +    + +   +++  ++ +   +      + V++ T  D
Sbjct: 190 AASSIMRTPVTLQFRDANVRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNATLQD 246

Query: 79  VV--VHSPRTMYLFGKNVGQANVILIGHD--GKQMLNLDILI------ERDIAHLEMTLR 128
            V  +     +    K    AN + I      KQ+   ++ +        +   ++  L+
Sbjct: 247 TVNMILMQNQL---DKKQLNANTLFIYPATPAKQLEYQELKVRTFQLSNVEAKQIQSLLK 303

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
             +    + V+  ++TV + G   TI+ +++ +   +                       
Sbjct: 304 SLLKIKEVVVDERANTVTIRGTPDTIRVAEQMIAAQD----------------------- 340

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
               + +V L+V + EV  D L  +G     + + S PS      +G          +V 
Sbjct: 341 --LPDPEVILEVKVLEVSHDRLTDLGIAWPNSFTVSTPST--VDTWGELHHLPINALNVS 396

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----- 303
           G+    +F+         T    LA P++ A + + A    G +    + SS+       
Sbjct: 397 GLSATANFKL------TDTDANLLASPSIRARNKEKARILIGDKVPVISSSSTPSTSGPS 450

Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--------YRVR 354
            A ++   D G+ L   P V     +G+++  EVS     +++ +  +           R
Sbjct: 451 YAQTIQYLDVGIKLEVEPQVYRDADVGMKLNLEVSNITNTISSSNSTTGLTSLAYEIGTR 510

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            A T++ +  G + +L GL++D+ +   + +P L ++P+LG LF N   + ++TEI +  
Sbjct: 511 SASTSLRVHDGESQILGGLIQDEDRLTADKVPGLGQLPVLGRLFSNHNGDHKKTEIVLEI 570

Query: 415 TPFLVKPVAMRDLSRP-----DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
           TP +V+P    D          D     D  +            P  A    G    G  
Sbjct: 571 TPHIVRPQTSADADTQELWSGTDVNVHADQLRLDPVGAEATEQMPVPAVRTPGNVGGGTT 630

Query: 470 G 470
           G
Sbjct: 631 G 631


>gi|207744652|ref|YP_002261044.1| general secretory pathway protein d [Ralstonia solanacearum
           IPO1609]
 gi|206596059|emb|CAQ62986.1| general secretory pathway protein d [Ralstonia solanacearum
           IPO1609]
          Length = 777

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 115/306 (37%), Gaps = 45/306 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V++ L+ A   QV ++  I EV  D   Q+G Q  +             +FG      
Sbjct: 393 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 451

Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                       G  VS     +            +L AL    
Sbjct: 452 LNLGVVAATVGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 511

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319
           ++  L+ P L  +  + A    G      T S        S T   +    D G+ L   
Sbjct: 512 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVK 571

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G + ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ 
Sbjct: 572 PQITEGGLVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNY 631

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q  ++ +P L  IPILGALFR+    R++T + +   P++++  A    +  D+ Y+   
Sbjct: 632 QDSEQKVPGLGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRYNYMR 690

Query: 439 DAKAFF 444
             +  F
Sbjct: 691 QTQQGF 696


>gi|152972270|ref|YP_001337416.1| outer membrane porin HofQ [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150957119|gb|ABR79149.1| putative transport portein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 413

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G +     + +   SG   + ++D      S    F++ G 
Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNI-GK 239

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 240 INGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 299

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GR+ L+++   + P  V+    G+  +   ++ +T VE+ SG T+
Sbjct: 300 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETL 359

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 360 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410


>gi|323135898|ref|ZP_08070981.1| general secretion pathway protein D [Methylocystis sp. ATCC 49242]
 gi|322398989|gb|EFY01508.1| general secretion pathway protein D [Methylocystis sp. ATCC 49242]
          Length = 817

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 130/300 (43%), Gaps = 26/300 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++V+  L++   +QV L+ TIAEV+ +   + G +  +    +    S +A+  G   + 
Sbjct: 509 RQVIETLDVM-PNQVFLEATIAEVKLNDTLRFGVRWFMQTHQNLFGFSSSANPAGPLPNT 567

Query: 242 GGDFSVKGVLDRFSF------------ETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
               ++ G     +F            +  L+AL   T +  +  P+LT +  + A    
Sbjct: 568 PLGTNLLGANVGANFPGFAYAFRAFNQQVTLNALNAITEVNVIQTPSLTVLDNRQAMLQV 627

Query: 290 GGQHLYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           G Q   +T+SS         SV   + GV+L  TP +   GRI L ++ EVS        
Sbjct: 628 GDQIPVQTLSSVSAIGNQFNSVNYTNTGVILAITPHISESGRIMLELEQEVSNVDPNTPP 687

Query: 346 GDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           G + P+ + R+  T V +    +++L GL+KD   +    IP+   +P+ G LF++    
Sbjct: 688 GSITPTIQQRRVKTQVVVNDSESLMLGGLVKDQRGRAATQIPVAGDVPVFGNLFKDKGDA 747

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            ++TE+ I  TP +V+ +        D+   + ++ K    +   +  G     E   + 
Sbjct: 748 VDKTELVIMITPHVVRSL--------DEGREITEEYKRKLLDISTRAIGRPHDIEQSARR 799


>gi|85712761|ref|ZP_01043805.1| Type II secretory pathway [Idiomarina baltica OS145]
 gi|85693401|gb|EAQ31355.1| Type II secretory pathway [Idiomarina baltica OS145]
          Length = 560

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 107/275 (38%), Gaps = 22/275 (8%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           +  + ++ L    + QV L+  I EV      Q G + +    S      F         
Sbjct: 273 AVGQFLDNLQSRLQRQVILEARIVEVTLGDQYQQGIRWNELNMSGRFDFGFNGSVPNDIA 332

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +   D       +   F   L  L+   +++ L+ P +TA + Q A    G    Y T  
Sbjct: 333 AATADGVFGLTFNSNRFTGFLELLQTQGSVQVLSNPRVTASNNQKAVIKIGEDEYYVTDV 392

Query: 300 SSTGATSVT------------THDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPV 340
           +S   T+VT                G+ L  TP +   G + L +   V           
Sbjct: 393 TSQTNTTVTQDALTSSNVDLTPFFSGISLDVTPQISDDGEVTLHVHPSVVETKEQEKVIT 452

Query: 341 IGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           IG     +P     +R++DT V   SG  +VL GL+++   +  E +PLL  +P++G LF
Sbjct: 453 IGDETLRLPLARSNIRESDTIVRARSGEIVVLGGLMQNSTSENVEKVPLLGDLPLVGNLF 512

Query: 399 RNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDD 432
           +N   +  + E+ I   P ++      ++L R  +
Sbjct: 513 KNKSNDASKKELVILIKPTVIGADTWQKELERSRE 547


>gi|319639388|ref|ZP_07994138.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           mucosa C102]
 gi|317399283|gb|EFV79954.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           mucosa C102]
          Length = 710

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 106/269 (39%), Gaps = 30/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224
           +K+++ L++    QV ++  I E      + +G +    G+S                  
Sbjct: 438 RKLIDELDVPT-RQVMVEARIVEAEDTFFRNLGVKFGSGGASGRTAWGSNWSNAQANHNT 496

Query: 225 ----------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                      P+ S   +      +     ++       +    + A E     +T++ 
Sbjct: 497 NASFNRGDVGYPTWSLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISN 556

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +     + A   SG +  Y+  SSS GATS+T     + L  TP +   G+I + ++ 
Sbjct: 557 PRVLTQDRKEAKIESGTEIPYQEASSS-GATSITFKKAVLGLTVTPNITPDGQIIMTVKI 615

Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
               P+   V++        +  +T   +  GGT+++ G+ +++       +P+L  IP+
Sbjct: 616 NRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVNKVPILGDIPV 675

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422
           +G LF++        E+ I  TP ++  V
Sbjct: 676 VGNLFKSRGKRENRRELLIFITPRIMDNV 704


>gi|271501355|ref|YP_003334380.1| general secretion pathway protein D [Dickeya dadantii Ech586]
 gi|270344910|gb|ACZ77675.1| general secretion pathway protein D [Dickeya dadantii Ech586]
          Length = 713

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/317 (20%), Positives = 129/317 (40%), Gaps = 34/317 (10%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
                T+++ G   T++   +   L  T      R+       ++V+N L+I    QV +
Sbjct: 351 SSGGRTIMIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 403

Query: 199 KVTIAEVRRDILKQIGFQHSIT------GSSSGPSKSFA----------ADFGGKFVSEG 242
           +  IAE++      +G Q +         +++G   S A                + S  
Sbjct: 404 EAIIAEIQDADGLNLGIQWANNRAGMTQFTNTGIPISTAVIGTDQFRKDGTLTTAYASAL 463

Query: 243 GDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G F+ +     R ++  ++ AL   +    LA P++  +    A+F  G +    T S +
Sbjct: 464 GSFNGITAGFYRGNWSMLMTALSSDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 523

Query: 302 TGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYR 352
           T         +V     G+ L   P +     + L+I+ EVS      ++ +     ++ 
Sbjct: 524 TVGSGNNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSANSSLGVTFN 583

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  +  V + +G T+V+ GLL     +    +PLL  IP+LG LFR+   + ++  + +
Sbjct: 584 TRTVNNAVMVSNGETVVVGGLLDKSTDENNSKVPLLGDIPVLGNLFRSKSQSVKKRNLML 643

Query: 413 AATPFLVK-PVAMRDLS 428
              P +++ P   +D S
Sbjct: 644 FLRPTIIRDPKQFQDAS 660


>gi|258625707|ref|ZP_05720586.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM603]
 gi|258581945|gb|EEW06815.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM603]
          Length = 571

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 107/266 (40%), Gaps = 32/266 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++  L+I    QV ++  I  V+   L ++G +  +   S+  S S           +
Sbjct: 308 REIIESLDIP-VKQVQIEARIVTVKEGNLDELGVRWGV--MSTNGSHSVGGTIESNLWQQ 364

Query: 242 G--------------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           G                            F V  +      +  L AL+  +    ++ P
Sbjct: 365 GLLAEDEFPVDEFLNVNLASASANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSP 424

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L   + Q A    G +  Y   SSS+GAT+V+     + L  TP +    R+ L +   
Sbjct: 425 RLITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVT 483

Query: 336 VSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                  +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+
Sbjct: 484 QDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPV 543

Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
           LGALFR +     ++E+ I  TP +V
Sbjct: 544 LGALFRRTYEQMGKSELLIFVTPKVV 569


>gi|260770770|ref|ZP_05879699.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio furnissii CIP 102972]
 gi|260614007|gb|EEX39197.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio furnissii CIP 102972]
 gi|315178810|gb|ADT85724.1| general secretion pathway protein D [Vibrio furnissii NCTC 11218]
          Length = 675

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/328 (19%), Positives = 123/328 (37%), Gaps = 53/328 (16%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN-LLNIAGE-----DQVTLKVT 201
            G   +   +QR   +       +  N    ++ + +MN +L++  +      QV ++  
Sbjct: 296 TGQKSSSGAAQRNEVMIAAH---ADTNSLVITAPQDIMNAILDVVAQLDIRRAQVLIEAL 352

Query: 202 IAEVRRDILKQIGFQHS-------ITGSSSGPSKSF------------------------ 230
           I E+       +G Q         I  S+SG S                           
Sbjct: 353 IVEMSEADGINLGVQWGSLESGSVIQYSNSGASIGSVMVGLEEAKDQTTTEYYYDSSGNR 412

Query: 231 -------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                  + D+     +  G       +    +  ++ A+   +    L+ P++T +   
Sbjct: 413 RPYTSTESGDYSSLASALSGINGAAVSVLMGDWTALISAVSSNSNTNILSSPSITVMDNG 472

Query: 284 SASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            ASF  G +    T S+S+        +V   + G+ L   P +     + L I+ EVS 
Sbjct: 473 EASFIVGEEVPVITGSTSSSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLAIEQEVSN 532

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            V+G N      +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IPI+G LF
Sbjct: 533 -VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERTAESESKVPLLGDIPIIGHLF 591

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRD 426
            ++    E+  + +   P +++     D
Sbjct: 592 SSTSTQVEKKNLMVFIKPTIIRNGVTAD 619


>gi|113869481|ref|YP_727970.1| general secretion pathway protein D [Ralstonia eutropha H16]
 gi|113528257|emb|CAJ94602.1| general secretion pathway protein D [Ralstonia eutropha H16]
          Length = 812

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 115/305 (37%), Gaps = 39/305 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVS 240
           + V++ L+ A   QV ++  I EV      ++G Q   +  S  G +  FA    G    
Sbjct: 426 RGVIDDLD-ARRAQVYIESMIVEVTSTQASELGIQWQGLISSPGGNNNVFAGTNFGTGGQ 484

Query: 241 EGGDFSVKGVLDRFS----------------------------FETVLHALERATAIRTL 272
              + ++ G L   +                               +L AL    ++  L
Sbjct: 485 NILNLTLAGALADSNRTAGIAAAQGLVQDIGGLNLGIVNKAMGLGALLRALGSNGSVNLL 544

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVT------THDYGVVLHFTPTVLS 324
           + P L  +  + A    G      T S   + GA SVT        D G+ L   P +  
Sbjct: 545 STPNLITLENEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITD 604

Query: 325 PGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G + ++I  E S  V    N    P+  VR  +T V +  G  IVL GL++D      +
Sbjct: 605 GGLVKMQIFQESSNVVQATANLIQGPTTNVRSIETNVLVDDGQIIVLGGLIEDSYGDGVQ 664

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +PLL  IP +G LFR    NR +T + +   P++++     D    D +  +    + F
Sbjct: 665 KVPLLGDIPWIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAADRLTQDRYDYMRAQQQGF 724

Query: 444 FFNRV 448
               +
Sbjct: 725 VSPNI 729


>gi|224823626|ref|ZP_03696735.1| type IV pilus secretin PilQ [Lutiella nitroferrum 2002]
 gi|224604081|gb|EEG10255.1| type IV pilus secretin PilQ [Lutiella nitroferrum 2002]
          Length = 691

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 13/244 (5%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS------------ITGSSSGPSKSFAADFGGKFVSE 241
            QV ++  I E   +  +++G + S            I G+ +G       +      + 
Sbjct: 447 KQVVIEARIVEATDNFSRELGVKLSYDRIGRLSLGGNIAGAGNGSLTDTLVNLPTNSAAT 506

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G   +V            L AL+  +  + +A P +       A+   G +  Y+  +SS
Sbjct: 507 GTIGAVYKAGASNLIGLELQALQTESQGKIVASPRVLTSDRTEATIEQGQEIPYQEATSS 566

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            GATS +     + L   P +     I + IQ           +  +PS + +K +T V 
Sbjct: 567 -GATSTSFKKAVLSLKVKPQITPDSTILMDIQINNDTADFANLSNGVPSLKTKKVNTQVL 625

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + +GGT+V+ G+   D  +    +PLL  IP+LGALFR+       TE+ +  TP +V  
Sbjct: 626 VENGGTVVIGGIYTQDENEGLSKVPLLGDIPLLGALFRSKTKKDNRTELLVFLTPRVVSD 685

Query: 422 VAMR 425
             + 
Sbjct: 686 FDIN 689


>gi|261381191|ref|ZP_05985764.1| type IV pilus biogenesis protein PilQ [Neisseria subflava NJ9703]
 gi|284795810|gb|EFC51157.1| type IV pilus biogenesis protein PilQ [Neisseria subflava NJ9703]
          Length = 710

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 106/269 (39%), Gaps = 30/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224
           +K+++ L++    QV ++  I E      + +G +    G+S                  
Sbjct: 438 RKLIDELDVPT-RQVMVEARIVEAEDTFFRNLGVKFGSGGASGRNAWGSNWSNAQTNYNT 496

Query: 225 ----------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                      P+ S   +      +     ++       +    + A E     +T++ 
Sbjct: 497 NASFNRGDVRYPTWSLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISN 556

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +     + A   SG +  Y+  SSS GATS+T     + L  TP +   G+I + ++ 
Sbjct: 557 PRVLTQDRKEAKIESGTEIPYQEASSS-GATSITFKKAVLGLTVTPNITPDGQIIMTVKI 615

Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
               P+   V++        +  +T   +  GGT+++ G+ +++       +P+L  IP+
Sbjct: 616 NRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPV 675

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422
           +G LF++        E+ I  TP ++  V
Sbjct: 676 VGNLFKSRGKRENRRELLIFITPRIMDNV 704


>gi|259907443|ref|YP_002647799.1| General secretion pathway protein D [Erwinia pyrifoliae Ep1/96]
 gi|224963065|emb|CAX54548.1| General secretion pathway protein D [Erwinia pyrifoliae Ep1/96]
 gi|283477275|emb|CAY73191.1| Type II secretion system protein outD [Erwinia pyrifoliae DSM
           12163]
          Length = 645

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 127/307 (41%), Gaps = 25/307 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN--------------LLNIA 191
           VL G+  T+QD   +   S   +++    +    ++  ++N               L+I+
Sbjct: 287 VLSGVSSTMQDKSESKTASPVAMTKDIVVKADTHTNSLIINAPPDVMGDLEEIITQLDIS 346

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSE--GGDFS 246
              QV ++  I EV+      +G Q    +  G+    + +  ++  G  V+E       
Sbjct: 347 -RAQVQVEAIIVEVQDADGLALGVQWFNKNGGGTQFPAADAPVSNLIGSTVAETLSKANG 405

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
           +       ++  + +AL+  +    LA P++  +    A FT G      T S +T    
Sbjct: 406 LAAGFYHGNWAGLFNALQTNSQNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDG 465

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVE 361
              SV     G+ L   P +     + + I+ EVS      +   +  ++  R    TV 
Sbjct: 466 VFNSVDRKSVGIKLKVKPQINKGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNTVL 525

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + SG T+V+ GLL     +++  +P+L KIP+LGALFR +   + +  + +   P +++ 
Sbjct: 526 VESGKTVVVGGLLDTTHNKVESSVPVLGKIPLLGALFRYTTDKQSKRNLMLFIRPTIIRQ 585

Query: 422 VAMRDLS 428
               D +
Sbjct: 586 QDSFDRT 592


>gi|148360420|ref|YP_001251627.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila str.
           Corby]
 gi|296106514|ref|YP_003618214.1| type IV pilus assembly protein PilQ [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282193|gb|ABQ56281.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila str.
           Corby]
 gi|295648415|gb|ADG24262.1| type IV pilus assembly protein PilQ [Legionella pneumophila 2300/99
           Alcoy]
          Length = 698

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 114/263 (43%), Gaps = 28/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------GSSSGPS-------- 227
           ++++  L+I    QV ++  I EV +D  + IG +  ++      G+  G +        
Sbjct: 421 RELIKQLDIP-VKQVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAP 479

Query: 228 -------KSFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276
                  +    D     ++     SV   L + +     +  L ALE       ++ P 
Sbjct: 480 ANVVPLERRLNLDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPR 539

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L   + Q+A   SG +  Y+  +SS GAT+V      + L  TP +   G+I + +Q   
Sbjct: 540 LITTNQQAAVIESGEEIPYQEATSS-GATAVAFKKAVLSLKVTPQITPDGKILMDLQINQ 598

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
             P      G +P+   ++  T V + +G TIVL G+ K D  ++   IP   ++P++G 
Sbjct: 599 DTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGI 657

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LF N +   +  E+ I  TP ++
Sbjct: 658 LFSNRQITLKNEELLIFITPRII 680


>gi|262166650|ref|ZP_06034387.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus VM223]
 gi|262026366|gb|EEY45034.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus VM223]
          Length = 545

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  V+   L ++G +  +  ++   S              
Sbjct: 282 REIIESLDIP-VKQVQIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGL 340

Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +      +     F V  +      +  L AL+  +    ++ P L
Sbjct: 341 LAEDEFPVDEFLNVNLAAASTNASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 400

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A    G +  Y   SSS+GAT+V+     + L  TP +    R+ L +     
Sbjct: 401 ITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQD 459

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LG
Sbjct: 460 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 519

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR +     ++E+ I  TP +V
Sbjct: 520 ALFRRTYEQMGKSELLIFVTPKVV 543


>gi|257095715|ref|YP_003169356.1| type IV pilus secretin PilQ [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048239|gb|ACV37427.1| type IV pilus secretin PilQ [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 703

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 106/274 (38%), Gaps = 38/274 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----GSSSGPSKSFAADFGGK 237
           + ++  +++A   QV ++  I E      K +G +            G   S  A  G +
Sbjct: 425 RAIITKVDVA-ARQVMIEARIVEAGDSFAKNLGVRLGWNQRQGYQFGGQGASGTAMAGAR 483

Query: 238 FVSEGGDFSVKGVLDRFS--------------------------------FETVLHALER 265
             + G   +    +  F+                                  T + ALE 
Sbjct: 484 ANTPGFYTTQVRDIPNFNTDAFNVNLPATPRTGNAGLFSLVLYNSALTQFLNTEISALEA 543

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + ++ P +   +   A    G +  Y+  +SS GATSV+     + L  TP +   
Sbjct: 544 DGRGKVISSPRVMTANNIEALIEQGVEIPYQQATSS-GATSVSFKKAVLSLKVTPQITPD 602

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G + ++++     P   +N G   +   +   T V + +GGT+V+ G+   +++   + I
Sbjct: 603 GNVTMKVEVNKDTPNTRLNTGAGVAIDNKHVKTEVLVENGGTVVIGGIYTQEVRNNTQRI 662

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P    +P +G LF++  +  ++ E+ I  TP +V
Sbjct: 663 PFFGDLPYIGWLFKSREWIDDKQELLIFITPRIV 696


>gi|113869383|ref|YP_727872.1| pili assembly protein PilQ [Ralstonia eutropha H16]
 gi|113528159|emb|CAJ94504.1| pili assembly protein PilQ [Ralstonia eutropha H16]
          Length = 706

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 101/257 (39%), Gaps = 23/257 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------S 222
           +  +  ++I    QV ++  I E      + +G +    G                   S
Sbjct: 447 QNFIGKIDIP-VRQVIIEARIVEATDSFSRNLGVKLGFAGQYNNARVGNTYNNVLPGATS 505

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +GP  S  A             S+            L ALE     + ++ P +   + 
Sbjct: 506 DNGPFLSLPAGAINGTNPANIAVSLFNSAATKFLALELSALEADGKGKIISSPRVVTANN 565

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
             A    G +  Y+  +SS GATSV      + L  TP +   G + L +  +V++  +G
Sbjct: 566 IKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVTPQITPEGNVLLDV--DVNKDSVG 622

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +      +   +   T V + +GGT+V+ G+         + +PLL  IP+LG LF+N+ 
Sbjct: 623 IQTTSGFAIDTKHVQTQVLVENGGTVVIGGIYTQTESNETDKVPLLGDIPVLGYLFKNNA 682

Query: 403 FNREETEIFIAATPFLV 419
             R  TE+ +  TP ++
Sbjct: 683 KVRNRTELLVFLTPRIL 699


>gi|241668668|ref|ZP_04756246.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877201|ref|ZP_05249911.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843222|gb|EET21636.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 587

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 102/259 (39%), Gaps = 20/259 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V+N ++I   DQV ++  I EV+R    ++GF + ++  S     +   D       +
Sbjct: 334 RNVINEIDIPN-DQVLIEARIVEVQRTSGLELGFNYGVSHPSG---LNVGLDTFRNPTPK 389

Query: 242 GGDFSVK----------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            G+               +      E  + ALE  +    ++ P L   + ++A    G 
Sbjct: 390 PGETDTSVVASTARLAYTLAGGLQLEMEIRALENESLANLVSSPHLVVSNNETAFIKDGK 449

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--- 348
              Y+  ++S GA SV   +  + L  TP +   G I + +    +              
Sbjct: 450 DVPYQQATAS-GAASVAFQEAVLELQVTPQIAPDGNIVMEVLVTKNSVGASSGKTSTGED 508

Query: 349 --PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P    R+  T V +    T+V+ G+   +  + +  IP L  IP LG LF  ++    
Sbjct: 509 LPPIINKREVTTKVMVKDSETVVIGGIYTKEQTETRNKIPFLGDIPYLGYLFSYTKIEDR 568

Query: 407 ETEIFIAATPFLVKPVAMR 425
           + E+ I  TP +++    +
Sbjct: 569 DAELLIFITPKIIESKVQK 587


>gi|15642625|ref|NP_232258.1| fimbrial assembly protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587503|ref|ZP_01677270.1| fimbrial assembly protein [Vibrio cholerae 2740-80]
 gi|121727577|ref|ZP_01680685.1| fimbrial assembly protein [Vibrio cholerae V52]
 gi|147673064|ref|YP_001218123.1| fimbrial assembly protein [Vibrio cholerae O395]
 gi|153217486|ref|ZP_01951197.1| fimbrial assembly protein [Vibrio cholerae 1587]
 gi|153820291|ref|ZP_01972958.1| fimbrial assembly protein [Vibrio cholerae NCTC 8457]
 gi|153821537|ref|ZP_01974204.1| fimbrial assembly protein [Vibrio cholerae B33]
 gi|153830200|ref|ZP_01982867.1| fimbrial assembly protein [Vibrio cholerae 623-39]
 gi|227082746|ref|YP_002811297.1| fimbrial assembly protein [Vibrio cholerae M66-2]
 gi|254851169|ref|ZP_05240519.1| fimbrial assembly protein [Vibrio cholerae MO10]
 gi|298500547|ref|ZP_07010351.1| fimbrial assembly protein [Vibrio cholerae MAK 757]
 gi|9657220|gb|AAF95771.1| fimbrial assembly protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548234|gb|EAX58302.1| fimbrial assembly protein [Vibrio cholerae 2740-80]
 gi|121630068|gb|EAX62473.1| fimbrial assembly protein [Vibrio cholerae V52]
 gi|124113543|gb|EAY32363.1| fimbrial assembly protein [Vibrio cholerae 1587]
 gi|126509166|gb|EAZ71760.1| fimbrial assembly protein [Vibrio cholerae NCTC 8457]
 gi|126520922|gb|EAZ78145.1| fimbrial assembly protein [Vibrio cholerae B33]
 gi|146314947|gb|ABQ19486.1| fimbrial assembly protein [Vibrio cholerae O395]
 gi|148874303|gb|EDL72438.1| fimbrial assembly protein [Vibrio cholerae 623-39]
 gi|227010634|gb|ACP06846.1| fimbrial assembly protein [Vibrio cholerae M66-2]
 gi|227014518|gb|ACP10728.1| fimbrial assembly protein [Vibrio cholerae O395]
 gi|254846874|gb|EET25288.1| fimbrial assembly protein [Vibrio cholerae MO10]
 gi|297540716|gb|EFH76773.1| fimbrial assembly protein [Vibrio cholerae MAK 757]
          Length = 578

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  V+   L+++G +  +  ++   S              
Sbjct: 315 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGL 373

Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +      +     F V  +      +  L AL+  +    ++ P L
Sbjct: 374 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 433

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A    G +  Y   SSS+GA++V      + L  TP +    R+ L +     
Sbjct: 434 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 492

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LG
Sbjct: 493 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 552

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR +     ++E+ I  TP +V
Sbjct: 553 ALFRRTYEQMGKSELLIFVTPKVV 576


>gi|296103142|ref|YP_003613288.1| general secretion pathway protein D [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057601|gb|ADF62339.1| general secretion pathway protein D [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 642

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 110/272 (40%), Gaps = 18/272 (6%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGG 236
           +S +KV++ L+I    QV ++  IAEV+      +G Q +    G   G +    +    
Sbjct: 328 NSLEKVIDKLDIRRP-QVLVEAIIAEVQDGNGMDLGVQWTGKHGGVQFGSTGLPISQVKN 386

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295
             +       +        +  +L AL  +     L+ P++  +  + ASF  G      
Sbjct: 387 GTIKGASFTGLATGFFNGDYGALLTALSTSGKNDILSTPSVVTLDNKEASFNVGQDVPVL 446

Query: 296 ---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPS 350
              +T S      SV     G  L   P +     I L+I+ EVS         A   P+
Sbjct: 447 SGSQTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDASATEDASLGPT 506

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+VL GL+++  +Q    +PLL  +P++G LFR +  +  +  +
Sbjct: 507 FNTRTINNEVMVHSGQTVVLGGLMENVSKQNVSKVPLLGDLPLVGQLFRYTSEDTSKRNL 566

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
            +     +++          DD+YS     K 
Sbjct: 567 MVFIHTTVLRD---------DDNYSAATKEKY 589


>gi|313291988|gb|ADR51186.1| general secretion pathway protein D [Aeromonas veronii]
          Length = 679

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 24/269 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--- 235
           S  ++V+  L+I    QV ++  I E++      +G Q            +     G   
Sbjct: 335 SELEQVVAKLDIR-RAQVLVEAIIVEMQDGDGLSLGVQWGNANGGGTQFTNSGLPLGSAI 393

Query: 236 --GKFVSEGGDFSVKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQ 283
             GK    G   +  G+L  F+          +  +  AL   T    L+ P++  +  +
Sbjct: 394 AAGKDYQNGKTDTAAGLLKEFNGMAAGFYHGDWAMLATALASNTKNDILSTPSIVTMDNK 453

Query: 284 SASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            ASF  G +   ++ S S+        ++     G  L  TP +     + L I+ EVS 
Sbjct: 454 EASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLNIEQEVSS 513

Query: 339 PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                  G     P++  R     V + SG T+VL GL+ +  ++    +PLL  IP+LG
Sbjct: 514 VAQTQATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQVSKVPLLGDIPVLG 573

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424
            LFR++     +  + +   P +++   +
Sbjct: 574 YLFRSTSNTTSKRNLMVFIRPTILRDADV 602


>gi|56459478|ref|YP_154759.1| Type II secretory pathway [Idiomarina loihiensis L2TR]
 gi|56178488|gb|AAV81210.1| Type II secretory pathway [Idiomarina loihiensis L2TR]
          Length = 557

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/269 (25%), Positives = 111/269 (41%), Gaps = 30/269 (11%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           + +L    + QV L+  I EV  +   Q G   S   S    +  F  DF G   S    
Sbjct: 274 ITVLESRLQRQVILEARIIEVTLNDGYQQGINWSDIYS---GNAGFGVDFNGVTPSNATS 330

Query: 245 FSVKGVL------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297
            ++ G+       D  +F  ++  L+    ++ L+ P ++A + Q A    G    + T 
Sbjct: 331 AAIGGLFGLTYTDDGNNFSGMIEMLQTQGTVQVLSNPRVSASNNQKAVIKIGEDEYFVTD 390

Query: 298 -----------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVI 341
                       SSS      T    G+ L  TP +   G + L +   V      E VI
Sbjct: 391 VTSRTVLNTGGASSSDSDIEFTPFFSGISLDVTPQISDDGEVILHVHPSVVETSEQEKVI 450

Query: 342 GVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            V+  +    +    +R++DT V+  +G  +VL GL++    +    +PLL  IP+LG L
Sbjct: 451 TVSGEESVLPLARSNIRESDTIVKARNGEIVVLGGLMQTTNSEEVGKVPLLGDIPLLGEL 510

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426
           F N R  +E+ E+ I   P +V     RD
Sbjct: 511 FTNRRNRQEKKELVILLKPTVVGVDTWRD 539


>gi|331006529|ref|ZP_08329826.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC1989]
 gi|330419665|gb|EGG94034.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC1989]
          Length = 678

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 6/241 (2%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKF 238
           K ++N +++    QV ++  I       +++ GF    + +S+  + +           F
Sbjct: 434 KSLINKVDVP-VRQVMIEARIVSATDTFMEEFGFFVGASDTSTANNPNLTTSALSDATVF 492

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G    V  V +  S    + ALE +     +++P +     Q+A  +SG Q  +   
Sbjct: 493 NPVGSVLDVSYVSNGVSLALEIQALEDSGYGEVVSQPRVLTGDKQTAKISSGQQIPF--T 550

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           SS     +    D  + L  TP +    RI + ++                   V +  T
Sbjct: 551 SSDGDTVTTIFQDAVLSLEVTPQITPDNRIIMELKVNRDSLDTSTVTVSGSPINVTELTT 610

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           T  +  G TIVL G+ +         +P+L  IP+LG LF ++    + TE+ I  TP +
Sbjct: 611 TALVGDGDTIVLGGIYEQTKTSSVSKVPVLGDIPVLGRLFTSNTDQDDRTELLIFITPRI 670

Query: 419 V 419
           +
Sbjct: 671 L 671


>gi|254225379|ref|ZP_04918990.1| fimbrial assembly protein [Vibrio cholerae V51]
 gi|125622013|gb|EAZ50336.1| fimbrial assembly protein [Vibrio cholerae V51]
          Length = 578

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  V+   L+++G +  +  ++   S              
Sbjct: 315 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGL 373

Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +      +     F V  +      +  L AL+  +    ++ P L
Sbjct: 374 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 433

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A    G +  Y   SSS+GA++V      + L  TP +    R+ L +     
Sbjct: 434 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 492

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LG
Sbjct: 493 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 552

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR +     ++E+ I  TP +V
Sbjct: 553 ALFRRTYEQMGKSELLIFVTPKVV 576


>gi|330012388|ref|ZP_08307367.1| type IV pilus secretin PilQ [Klebsiella sp. MS 92-3]
 gi|328533849|gb|EGF60524.1| type IV pilus secretin PilQ [Klebsiella sp. MS 92-3]
          Length = 408

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G +     + +   SG   + ++D      S    F++ G 
Sbjct: 176 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNI-GK 234

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 235 INGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 294

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GR+ L+++   + P  V+    G+  +   ++ +T VE+ SG T+
Sbjct: 295 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETL 354

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 355 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 405


>gi|255067346|ref|ZP_05319201.1| type IV pilus biogeneis protein PilQ [Neisseria sicca ATCC 29256]
 gi|255048497|gb|EET43961.1| type IV pilus biogeneis protein PilQ [Neisseria sicca ATCC 29256]
          Length = 711

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 112/269 (41%), Gaps = 30/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------------- 222
           +K+++ L++    QV ++  I E +    + +G +    G+                   
Sbjct: 439 RKLIDELDVPT-RQVMVEARIVEAKDGFSRDLGVKFGAAGARGRNSWGNDWSAAQNNHNT 497

Query: 223 --------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                   S+ P+ S   +      +     ++   L   +    + A E     +T++ 
Sbjct: 498 NASVFRGESAYPTWSLQPNVSLPATAATNSIALVRALSSGALGLEISASEATGKSKTISN 557

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +     + A+  SG +  Y+  SSS GATSV+     + L  TP V   G+I + ++ 
Sbjct: 558 PRVLTQDRREATIESGTEIPYQEASSS-GATSVSFKKAVLGLTVTPNVTPDGQIIMTVKI 616

Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
               PV   V++      + +  +T   +  GGT+++ G+ ++D       +PLL  IP+
Sbjct: 617 TKDTPVDCTVDSLITKCIQTKNLNTQAMVEDGGTLIVGGIYEEDNSDTINKVPLLGDIPV 676

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422
           +G LF++     E  E+ I  TP ++  V
Sbjct: 677 VGNLFKSRAKKEERRELLIFITPRIMDGV 705


>gi|310765060|gb|ADP10010.1| General secretion pathway protein D [Erwinia sp. Ejp617]
          Length = 645

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 127/307 (41%), Gaps = 25/307 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN--------------LLNIA 191
           VL G+  T+QD   +   S   +++    +    ++  ++N               L+I+
Sbjct: 287 VLSGVSSTMQDKSESKTASPVAMTKDIVVKADTHTNSLIINAPPDVMGDLEEIITQLDIS 346

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSE--GGDFS 246
              QV ++  I EV+      +G Q    +  G+    + +  ++  G  V+E       
Sbjct: 347 -RAQVQVEAIIVEVQDADGLALGVQWFNKNGGGTQFPAADAPVSNLIGSTVAETLSKANG 405

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
           +       ++  + +AL+  +    LA P++  +    A FT G      T S +T    
Sbjct: 406 LAAGFYHGNWAGLFNALQTNSQNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDG 465

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVE 361
              SV     G+ L   P +     + + I+ EVS      +   +  ++  R    TV 
Sbjct: 466 VFNSVDRKSVGIKLKVKPQINKGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNTVL 525

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + SG T+V+ GLL     +++  +P+L KIP+LGALFR +   + +  + +   P +++ 
Sbjct: 526 VESGKTVVVGGLLDTTHNKVESSVPVLGKIPLLGALFRYTTDKQSKRNLMLFIRPTIIRQ 585

Query: 422 VAMRDLS 428
               D +
Sbjct: 586 QDSFDRT 592


>gi|254285824|ref|ZP_04960786.1| fimbrial assembly protein [Vibrio cholerae AM-19226]
 gi|150424006|gb|EDN15945.1| fimbrial assembly protein [Vibrio cholerae AM-19226]
          Length = 578

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  V+   L+++G +  +  ++   S              
Sbjct: 315 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGL 373

Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +      +     F V  +      +  L AL+  +    ++ P L
Sbjct: 374 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 433

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A    G +  Y   SSS+GA++V      + L  TP +    R+ L +     
Sbjct: 434 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 492

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LG
Sbjct: 493 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 552

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR +     ++E+ I  TP +V
Sbjct: 553 ALFRRTYEQMGKSELLIFVTPKVV 576


>gi|330830590|ref|YP_004393542.1| general secretion pathway protein D [Aeromonas veronii B565]
 gi|328805726|gb|AEB50925.1| General secretion pathway protein D [Aeromonas veronii B565]
          Length = 679

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 24/269 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--- 235
           S  ++V+  L+I    QV ++  I E++      +G Q            +     G   
Sbjct: 335 SELEQVVAKLDIR-RAQVLVEAIIVEMQDGDGLSLGVQWGNANGGGTQFTNSGLPLGSAI 393

Query: 236 --GKFVSEGGDFSVKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQ 283
             GK    G   +  G+L  F+          +  +  AL   T    L+ P++  +  +
Sbjct: 394 AAGKDYQNGKTDTAAGLLKEFNGMAAGFYHGDWAMLATALASNTKNDILSTPSIVTMDNK 453

Query: 284 SASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            ASF  G +   ++ S S+        ++     G  L  TP +     + L I+ EVS 
Sbjct: 454 EASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLNIEQEVSS 513

Query: 339 PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                  G     P++  R     V + SG T+VL GL+ +  ++    +PLL  IP+LG
Sbjct: 514 VAQTQATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQVSKVPLLGDIPVLG 573

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424
            LFR++     +  + +   P +++   +
Sbjct: 574 YLFRSTSNTTSKRNLMVFIRPTILRDADV 602


>gi|194290974|ref|YP_002006881.1| fimbrial type IV assembly protein pilq precursor [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224809|emb|CAQ70820.1| Fimbrial type IV assembly protein pilQ precursor [Cupriavidus
           taiwanensis LMG 19424]
          Length = 710

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 101/257 (39%), Gaps = 23/257 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------S 222
           +  +  ++I    QV ++  I E      + +G +    G                   S
Sbjct: 451 QSFIGKIDIP-VRQVIIEARIVEATDTFSRNLGVKLGFAGQYNNARVGNTYNNVLPGATS 509

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +GP  S  A             S+            L ALE     + ++ P +   + 
Sbjct: 510 DNGPFLSLPAGSINGTNPANIAVSLFNSAATRFLALELSALEADGKGKIISSPRVVTANN 569

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
             A    G +  Y+  +SS GATSV      + L  TP +   G + L +  +V++  +G
Sbjct: 570 IKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVTPQITPEGNVLLDV--DVNKDSVG 626

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +      +   +   T V + +GGT+V+ G+         + +PLL  IP+LG LF+N+ 
Sbjct: 627 IQTTSGFAIDTKHVQTQVLVENGGTVVIGGIYTQTESTDVDKVPLLGDIPVLGYLFKNNA 686

Query: 403 FNREETEIFIAATPFLV 419
             R  TE+ +  TP ++
Sbjct: 687 KVRNRTELLVFLTPRIL 703


>gi|297581470|ref|ZP_06943393.1| fimbrial assembly protein [Vibrio cholerae RC385]
 gi|297534308|gb|EFH73146.1| fimbrial assembly protein [Vibrio cholerae RC385]
          Length = 578

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  V+   L+++G +  +  ++   S              
Sbjct: 315 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGL 373

Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +      +     F V  +      +  L AL+  +    ++ P L
Sbjct: 374 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 433

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A    G +  Y   SSS+GA++V      + L  TP +    R+ L +     
Sbjct: 434 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 492

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LG
Sbjct: 493 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 552

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR +     ++E+ I  TP +V
Sbjct: 553 ALFRRTYEQMGKSELLIFVTPKVV 576


>gi|325124244|gb|ADY83767.1| putative general secretion pathway protein [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 756

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 116/310 (37%), Gaps = 45/310 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV      Q+G Q ++   +SG       + G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGKDADQLGVQWALGDINSGIGLINFTNAGSSLASL 440

Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278
              +   G     S                       +  ++ AL+  TA   L+ P++ 
Sbjct: 441 AAGYLTGGASGLGSAIGAGSSIALGKYKEGADGSRQLYGALIQALKENTASNLLSTPSIV 500

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            +  + A    G    + T S +T +T      +V   D GV L   P +   G + L I
Sbjct: 501 TMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGENGTVRLEI 560

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + EVS                R   T V    G T+VL GL+ DD++  ++GIP LS IP
Sbjct: 561 EQEVSNVQASKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVEFNRQGIPGLSSIP 620

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
            LG LFR+   +  +  + +   P +V                  +D +     R +++Y
Sbjct: 621 YLGRLFRSDTRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYSQLY 665

Query: 453 GPKEASEVEG 462
             + A +  G
Sbjct: 666 SLQLAMDKNG 675


>gi|254429436|ref|ZP_05043143.1| Bacterial type II and III secretion system protein [Alcanivorax sp.
           DG881]
 gi|196195605|gb|EDX90564.1| Bacterial type II and III secretion system protein [Alcanivorax sp.
           DG881]
          Length = 384

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 161/430 (37%), Gaps = 82/430 (19%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
             + A +  +    A V N  D+       + +      +L  P  V  V  SDP  A +
Sbjct: 3   GAAWAVMATLLWLTATVSNAQDL----TDSMRLAPGDQKVLTFPAAVSKVATSDPGVAAL 58

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V     + L  K                                               
Sbjct: 59  TVTGSAELLLTAK----------------------------------------------- 71

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
               + VL   +R      R+  +  T L  +                  +    QV   
Sbjct: 72  -AEGSAVLSVWLRNSSKPLRSTVVVATTLGDA------------------LPFGTQVQTD 112

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEGGDFSVKGVLDRF 254
           + + EV R  L Q+G  +S + +    +   AA        G   +  G           
Sbjct: 113 IRVLEVSRSELNQLGMSYSNSFNGGQSAVGIAAPGSGFQVPGAVPTPLGTEGFNLFGFGA 172

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +    ++ALE      TLAEP+LT++SGQSASF SGG+    T S++ G   +   ++G+
Sbjct: 173 NSVLAINALEAGGFAYTLAEPSLTSLSGQSASFLSGGEFPVPTRSTTDG-VQIEFKEFGI 231

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVL 370
            L  TPTV+   +I L++  EVSE             +P  RVR+A+TTV L  G T ++
Sbjct: 232 GLSLTPTVIDKSQIILKVAPEVSELDFSAGVETGGVAVPGLRVRRAETTVSLAPGETFII 291

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LS 428
           +GL+  +     + +P +  IP+LGA FR+SR  +++ E+ +  TP LV P       ++
Sbjct: 292 SGLVSRNTINSSDRLPGIGNIPLLGAFFRSSRIQKDDKELVMVVTPHLVTPQEATSPPVT 351

Query: 429 RPDDHYSVED 438
            P   Y    
Sbjct: 352 LPGAGYHSSS 361


>gi|319785509|ref|YP_004144985.1| general secretion pathway protein D [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171397|gb|ADV14935.1| general secretion pathway protein D [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 707

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 112/261 (42%), Gaps = 14/261 (5%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ +++    QV L+  IAEV  +   + G +              +     K V+ 
Sbjct: 427 EQILSKVDVL-PTQVMLEAVIAEVTLNDDLKYGLRW----FFENGGMKISVSDVAKGVAA 481

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299
                        + +  L+AL   T +  ++ PT+ A++ Q A    G Q    T    
Sbjct: 482 AALPGFNWSYATDNIQVTLNALSSITDVNVISAPTIMALNNQKAVLQVGDQVPIATRQVV 541

Query: 300 ----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVR 354
                S+   SV   D GV+L  TP + + GR+ L I+ EVS      ++G D P+ + R
Sbjct: 542 DQTLGSSPVVSVEMKDTGVILTVTPRINNAGRVMLDIEQEVSNVTKTTSSGIDSPTIQQR 601

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           K  T V +  G ++ L GL++      +  +P+L  IPI+G  F+    +   TE+ I  
Sbjct: 602 KIQTRVLVNDGESLALGGLIQSRNNVDRTQVPILGDIPIIGNAFKQKTDSIGRTELIIFI 661

Query: 415 TPFLVKPVAMRDLSRPDDHYS 435
            P +V+   + +     D + 
Sbjct: 662 RPHVVR--DINEAREVTDEFR 680


>gi|332851464|ref|ZP_08433461.1| general secretion pathway protein D [Acinetobacter baumannii
           6013150]
 gi|332866854|ref|ZP_08437241.1| general secretion pathway protein D [Acinetobacter baumannii
           6013113]
 gi|332729917|gb|EGJ61248.1| general secretion pathway protein D [Acinetobacter baumannii
           6013150]
 gi|332734382|gb|EGJ65503.1| general secretion pathway protein D [Acinetobacter baumannii
           6013113]
          Length = 758

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 117/312 (37%), Gaps = 47/312 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440

Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276
              +                       L+  +F+        ++ AL+  T    L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLELGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +T +T      +V   D GV L   P +   G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD    ++GIP LS 
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           IP +G LFR+   +  +  + +   P +V                  +D +     R N+
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 665

Query: 451 IYGPKEASEVEG 462
           +Y  + A +  G
Sbjct: 666 LYSLQLAMDKNG 677


>gi|261254112|ref|ZP_05946685.1| type IV pilus biogenesis protein PilQ [Vibrio orientalis CIP
           102891]
 gi|260937503|gb|EEX93492.1| type IV pilus biogenesis protein PilQ [Vibrio orientalis CIP
           102891]
          Length = 563

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 107/257 (41%), Gaps = 21/257 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           +++++ L+I    QV ++  I  V    L ++G +     ++   S              
Sbjct: 307 QELISALDIP-VKQVQIEARIVTVHEGNLDELGVRWGYHNTNGSTSLGSSIEDNVFGAVP 365

Query: 230 ----FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                  +     V+     F V  +      +  L AL+R +    ++ P L   + + 
Sbjct: 366 IDDMLNVNLAATSVNASSIAFQVAKLGSDMLLDLELSALQRESKAEVISSPRLITTNKKP 425

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIG 342
           A    G +  Y   SSS+GATSV      + L   P +    R+ L +      P  ++ 
Sbjct: 426 AYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVVPQITPDNRLVLDLSVTQDRPGDIVK 484

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
              G+  +   ++  T V + +G T+VL G+ +  +    + +P+L  +P+LGALFR + 
Sbjct: 485 TGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHSVTDAVDKVPMLGDLPLLGALFRRTY 544

Query: 403 FNREETEIFIAATPFLV 419
               ++E+ I  TP +V
Sbjct: 545 QKMGKSELLIFVTPKVV 561


>gi|293610078|ref|ZP_06692379.1| predicted protein [Acinetobacter sp. SH024]
 gi|292827310|gb|EFF85674.1| predicted protein [Acinetobacter sp. SH024]
          Length = 758

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 118/312 (37%), Gaps = 47/312 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440

Query: 241 -----------------------EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPT 276
                                   G   ++    + R ++  ++ AL+  T    L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIAGGANKGNGATLALGNFENSRKAYGALIQALKTNTKSNLLSTPS 500

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +T +T      +V   D GV L   P +   G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD    ++GIP LS 
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           IP +G LFR+   +  +  + +   P +V                  +D +     R ++
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYSQ 665

Query: 451 IYGPKEASEVEG 462
           +Y  + A +  G
Sbjct: 666 LYSLQLAMDKNG 677


>gi|187476847|ref|YP_784871.1| general secretion pathway protein D [Bordetella avium 197N]
 gi|115421433|emb|CAJ47938.1| general secretion pathway protein D [Bordetella avium 197N]
          Length = 860

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 125/318 (39%), Gaps = 32/318 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSF---------- 230
           + V++ L+     QV ++  I EV  D   + G Q  +  G+ +  S SF          
Sbjct: 404 RTVIDQLDQR-RAQVLVESMIVEVSEDKASEFGIQWMTGAGNINSNSTSFIGGTNLGGSG 462

Query: 231 --------AADFGGKFVSEGGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAI 280
                   + D  GK +S G       VL     +   +  A+++      L+ P L  +
Sbjct: 463 LGGVQGPTSLDVLGKGLSLGVVKGTVDVLGNKVINLGVLARAMQKDGEANILSTPNLLTL 522

Query: 281 SGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
             QSAS   G    + T          SS    ++   D G+ L+  P +   G + L I
Sbjct: 523 DNQSASILVGKTVPFVTGQYVTSGGNGSSNPFQTIEREDVGLKLNIRPQISEGGAVKLDI 582

Query: 333 QTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
             EVS        A        R  DT+V +  G  IVL GLL+D + Q   G+P LS I
Sbjct: 583 YQEVSSIDTSNSTAVSGVVTNKRAIDTSVLVEDGQIIVLGGLLEDSVSQGANGVPGLSSI 642

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           PILGALFR       +T + +   P++V+    R  S   D Y      +A      + +
Sbjct: 643 PILGALFRYDSRRHTKTNLMVFLRPYVVRD-NRRAASLTMDRYDYMRRQQAASQPEAHWL 701

Query: 452 YGPKEASEVEGQNYKGAI 469
               +  E+     +G++
Sbjct: 702 LPQVQTPELTPPGSRGSV 719


>gi|330889718|gb|EGH22379.1| general secretion pathway protein D [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 680

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 116/308 (37%), Gaps = 21/308 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206
           G     +    +  ++    S     +   +  K++ + +        QV ++  I EV 
Sbjct: 360 GANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 419

Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258
                 +G Q  +     +SG + +     G +     G  ++      F      + + 
Sbjct: 420 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 479

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312
            L ALE     + L+ P+L  ++ Q A    G              S++T  +SV     
Sbjct: 480 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 539

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIV 369
           GV+L   P +   G + + IQ +VS         D    P    R   T V   SG T++
Sbjct: 540 GVILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSGQTVL 599

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GL+K D  +    +P L +IP L  LF ++  ++  TE+ +  TP ++   +     +
Sbjct: 600 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQ 657

Query: 430 PDDHYSVE 437
             D Y  +
Sbjct: 658 VTDDYRQQ 665


>gi|229507318|ref|ZP_04396823.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae BX 330286]
 gi|229509758|ref|ZP_04399239.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae B33]
 gi|229513553|ref|ZP_04403017.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TMA 21]
 gi|229516883|ref|ZP_04406329.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC9]
 gi|229521696|ref|ZP_04411114.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TM 11079-80]
 gi|229606824|ref|YP_002877472.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae MJ-1236]
 gi|262158485|ref|ZP_06029600.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae INDRE 91/1]
 gi|262170121|ref|ZP_06037810.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC27]
 gi|229341290|gb|EEO06294.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TM 11079-80]
 gi|229345946|gb|EEO10918.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC9]
 gi|229349430|gb|EEO14386.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TMA 21]
 gi|229353232|gb|EEO18171.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae B33]
 gi|229354823|gb|EEO19744.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae BX 330286]
 gi|229369479|gb|ACQ59902.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae MJ-1236]
 gi|262021529|gb|EEY40241.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC27]
 gi|262029646|gb|EEY48295.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae INDRE 91/1]
          Length = 571

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  V+   L+++G +  +  ++   S              
Sbjct: 308 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGL 366

Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +      +     F V  +      +  L AL+  +    ++ P L
Sbjct: 367 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 426

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A    G +  Y   SSS+GA++V      + L  TP +    R+ L +     
Sbjct: 427 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 485

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LG
Sbjct: 486 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 545

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR +     ++E+ I  TP +V
Sbjct: 546 ALFRRTYEQMGKSELLIFVTPKVV 569


>gi|258592161|emb|CBE68468.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 764

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 113/282 (40%), Gaps = 40/282 (14%)

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------------S 222
           A    +  +  ++I    QV ++  I E  R   + +G Q   TG               
Sbjct: 481 AVERMEAFLKQIDIPTP-QVLIEARIVEATRKFSQSLGIQWGGTGIPTKSGSGTGATVFG 539

Query: 223 SSGPSKSFAADFGGKFVSEGG---------------------DFSVKGVLDRFSFETVLH 261
            +  S  F  + G    + GG                       ++  + +RF     L 
Sbjct: 540 GTTNSLQFPTNSGLPTTTGGGIPFGSVPLALNLPATSPHLAIGMTIGSLANRFLVGAQLS 599

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
             E    IRTL+ P +     + A    G Q  Y T+  ++G T V   D  + L   P 
Sbjct: 600 VAENQGKIRTLSSPRVATQDNEEAEIKQGTQVPYTTI-DASGRTVVQFQDAFIKLKVKPH 658

Query: 322 VLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           +   GR+ ++++ E S P   VN   G +     RKA T + + +G T+V+ GLL+    
Sbjct: 659 ITPDGRVAMKVEAERSFPGQQVNFSGGFVFPINTRKATTNIMVQNGSTVVIGGLLQSSET 718

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREET-EIFIAATPFLVK 420
            + + +P+L  IPILG LF+      +E  E+ I  TP +++
Sbjct: 719 IISDQVPVLGDIPILGWLFKRRAIGPDERVELLIFLTPSVLQ 760


>gi|292489895|ref|YP_003532785.1| protein transport protein hofQ [Erwinia amylovora CFBP1430]
 gi|291555332|emb|CBA23681.1| Protein transport protein hofQ precursor [Erwinia amylovora
           CFBP1430]
 gi|312174079|emb|CBX82332.1| Protein transport protein hofQ precursor [Erwinia amylovora ATCC
           BAA-2158]
          Length = 414

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 135/314 (42%), Gaps = 31/314 (9%)

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI--QDSQRAVELSETFLSQSGR 173
           +  D A +  +L+        R+     ++ L     ++  +D+++A+  +E ++ Q   
Sbjct: 123 VHADAASVNTSLQS----ERARLMSARGSITLDSRTNSLLLRDTEKALAQTEHWVRQ--- 175

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKS 229
                         L++  E Q+ L   I  +  + L+++G    ++G    + +  +  
Sbjct: 176 --------------LDVPLE-QIELAAQIVTMSEESLRELGVTWGMSGEAQVADALRTSQ 220

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              D      +     ++   LD    E  L ALE       +A P L     Q+AS   
Sbjct: 221 LRVDLASGRPAGVAGLTLA-KLDGRLLELELSALESEHQADIIASPRLFTSHQQTASIKQ 279

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347
           G +  Y+  + ++G+T++   +  + +  TP V S GRI L++    + P   + +G+  
Sbjct: 280 GTEIPYEVSTGNSGSTTMEFKEAMLAMEVTPLVQSNGRILLKLHISQNVPGRNMRSGENE 339

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ DT V L  G T+ L G+ +         +P L  IP+LG+LFR+    ++ 
Sbjct: 340 VLTIDKQEIDTQVMLKDGQTLALGGIFQQQSATGSTRVPWLGDIPLLGSLFRHDVRQQKR 399

Query: 408 TEIFIAATPFLVKP 421
            E+ I  TP LV+ 
Sbjct: 400 RELVIFITPRLVRD 413


>gi|254784514|ref|YP_003071942.1| general secretion pathway protein D [Teredinibacter turnerae T7901]
 gi|237684660|gb|ACR11924.1| general secretion pathway protein D [Teredinibacter turnerae T7901]
          Length = 661

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 136/370 (36%), Gaps = 47/370 (12%)

Query: 105 DGKQMLNLDILI---ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           D  Q+   ++ +   E   A    T+   +  +  ++    D     G  R     +   
Sbjct: 255 DRPQLQTGNVRVVYLEYATAKDVATVLSKVVQNMAKMTPGGDK----GAARQGATVEADE 310

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
             +   ++  G    A  +   V++ L+I    QV ++  I E+     + +G       
Sbjct: 311 ATNSLLITAEGDQLDAIMA---VVDRLDIR-RAQVLVEAIIVEMTLGDKESLGIDWMFKN 366

Query: 222 SSSG-------------------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
           ++ G                          +       GG   S+G    V G      F
Sbjct: 367 ATQGLIGASTAGGTGAAGVAAALFGGAEDAAAQLLTALGG---SDGQTLGVAGESGGEDF 423

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGAT----SVT 308
             +++ L+  +    L+ PTL  +    A  + G    + T S       G T    ++ 
Sbjct: 424 LVLVNMLQSNSNANILSTPTLLTMDNNEAMISVGQNVPFVTGSFTNAGGNGGTNPFQTIQ 483

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             D G+ L  TP V    ++ L IQ E+S       +        RK +T V       I
Sbjct: 484 RQDVGITLTVTPHVNEGDKVILDIQQEISSVSEEAGSASDVITNQRKVETQVMAKDRSVI 543

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           VL GL++D++Q+ +  +P+L  IP++G LFR++     ++ + I   P +++     + +
Sbjct: 544 VLGGLIRDELQKSENRVPVLGSIPVMGRLFRSNSETLRKSNLMIFIRPTIIRDDETLEGA 603

Query: 429 RPDDHYSVED 438
             + +  + D
Sbjct: 604 TAEKYTYIRD 613


>gi|229527442|ref|ZP_04416834.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae 12129(1)]
 gi|229335074|gb|EEO00559.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae 12129(1)]
 gi|327485110|gb|AEA79517.1| Type IV pilus biogenesis protein PilQ [Vibrio cholerae LMA3894-4]
          Length = 571

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  V+   L+++G +  +  ++   S              
Sbjct: 308 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGL 366

Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +      +     F V  +      +  L AL+  +    ++ P L
Sbjct: 367 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 426

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A    G +  Y   SSS+GA++V      + L  TP +    R+ L +     
Sbjct: 427 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 485

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LG
Sbjct: 486 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 545

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR +     ++E+ I  TP +V
Sbjct: 546 ALFRRTYEQMGKSELLIFVTPKVV 569


>gi|188535320|ref|YP_001909117.1| Putative type II secretion system protein [Erwinia tasmaniensis
           Et1/99]
 gi|188030362|emb|CAO98253.1| Putative type II secretion system protein [Erwinia tasmaniensis
           Et1/99]
          Length = 384

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 131/311 (42%), Gaps = 27/311 (8%)

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           +  D A +  +L+    +   R+     +V L     ++        L++T         
Sbjct: 93  VHADAAAVNTSLQ----NERTRLMSARGSVTLDSRTNSLLLRDTEKALTQT--------- 139

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFA 231
                 ++ +  L++    Q+ L   I  +  + L+++G    ++G    S +  +    
Sbjct: 140 ------ERWIRQLDVPLA-QIELAAQIVTISEESLREMGVTWGMSGEAQVSDALRTSQLR 192

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            +      +    F++   LD       L ALE       +A P L     Q+AS   G 
Sbjct: 193 VELATGRPAGVAGFTLA-KLDGRLLALELSALESEHQADIIASPRLFTSHQQTASIKQGT 251

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MP 349
           +  Y+  + ++G+T++   +  + +  TP V   GRI L++    + P   + +G+  + 
Sbjct: 252 EIPYEVSTGNSGSTTMEFKEAMLGMEVTPVVQPNGRILLKLHISQNVPGRNMRSGENEVL 311

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   ++ DT V L  G T+ L G+ +   +  +  +P L  IP+LGALFR+    ++  E
Sbjct: 312 TIDKQEIDTQVILKDGQTLALGGIFQQQSESGRTKVPWLGDIPLLGALFRHDVRQQKRRE 371

Query: 410 IFIAATPFLVK 420
           + I  TP L++
Sbjct: 372 LVIFITPRLIR 382


>gi|13475694|ref|NP_107261.1| general secretion proteinD [Mesorhizobium loti MAFF303099]
 gi|14026450|dbj|BAB53047.1| general secretion protein D [Mesorhizobium loti MAFF303099]
          Length = 708

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 117/288 (40%), Gaps = 15/288 (5%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
                V   E                +++++ +++    QV L+  IAEV  +   + G 
Sbjct: 401 AHATVVADVENNALLIQTTARDYQRIEQILSKVDVL-PTQVMLEAVIAEVTLNDDLKYGL 459

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           +       +  S +  A         G ++S        + +  L+AL + T +  ++ P
Sbjct: 460 RWFFENGGTKVSVTDVAKAAAAATLPGFNWSYA----TDNIQVTLNALSKITDVNVISAP 515

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRI 328
           T+ A++ Q A    G Q    T  S            SV   D GV+L  TP + + GR+
Sbjct: 516 TIMALNNQKAILQVGDQVPILTQQSQDTGNGSAPIINSVQMKDTGVILTVTPRINNAGRV 575

Query: 329 GLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            L IQ EVS      ++  D P+ + RK  T V +  G ++ L GL++ +    +  +P+
Sbjct: 576 MLDIQQEVSNVTKTDSSDIDSPTIQQRKVQTRVLVNDGESLALGGLIQQNNSVDRSQVPI 635

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           L  IPILG  F+        TE+ I   P +V+   + +     D + 
Sbjct: 636 LGDIPILGNAFKQKDDTIRRTELIIFIRPHVVR--DINEAREVTDEFR 681


>gi|262375159|ref|ZP_06068393.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
 gi|262310172|gb|EEY91301.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
          Length = 754

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 106/268 (39%), Gaps = 31/268 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  ++ L+I    QV ++  I EV      Q+G Q ++   SSG       +FG    + 
Sbjct: 378 ESAIDQLDIR-RQQVLIEAAIIEVEGTDADQLGVQWALGDISSGIGLVNFDNFGTSLKNI 436

Query: 242 G-----------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                                   GD+       R  +  ++ AL+  T    L+ P++ 
Sbjct: 437 AAGYLTGGGAGAASAVGAGSSLVLGDYREGSDGSRRLYGAMIQALKETTKSNLLSTPSIV 496

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            +  + A    G    + T S STGA       T++   D GV L   P +   G + L 
Sbjct: 497 TMDNEEAYIVVGENVPFVTGSVSTGAAGVANPYTTIERKDVGVTLKVVPHIGEDGTVRLE 556

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++ EVS+               R   T++    G TIVL GL+ D+    ++ +P L  I
Sbjct: 557 VEQEVSDVKASKGQAQDLVTSKRAIKTSILAEHGQTIVLGGLISDNTSYGRQAVPGLGAI 616

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P LG LFR+   + ++  + I   P +V
Sbjct: 617 PGLGRLFRSEGKSNQKRNLLIFIHPTIV 644


>gi|254524408|ref|ZP_05136463.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
 gi|219721999|gb|EED40524.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
          Length = 792

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 126/314 (40%), Gaps = 32/314 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------- 234
           ++V++ L+     QV ++  I EV +    ++G Q  +    +     F           
Sbjct: 379 RRVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTTGGSGLNT 437

Query: 235 ------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                       G K     G  ++ GV    + + + +AL+       L+ P L  +  
Sbjct: 438 GARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSRGGANILSTPNLMTLDN 497

Query: 283 QSASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           ++AS   G    + +          S+    ++   D G+ L   P +   G + L I  
Sbjct: 498 EAASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQ 557

Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           EVS       ++        R  DT+V L  G  +VL GLL+D +   ++ +P L KIP+
Sbjct: 558 EVSSIDAQSASSTAGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPV 617

Query: 394 LGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           LGALFR+    R +T + +   P +V+ P A + L+R  D Y    +A+A      +   
Sbjct: 618 LGALFRSDTRKRAKTNLMVFLRPHVVRDPAAGQRLTR--DRYDYMRNAQAGAQPAQSWAL 675

Query: 453 GPKEASEVEGQNYK 466
               A ++  Q+  
Sbjct: 676 PALSAPQLPPQDLS 689


>gi|153825107|ref|ZP_01977774.1| fimbrial assembly protein [Vibrio cholerae MZO-2]
 gi|149741253|gb|EDM55295.1| fimbrial assembly protein [Vibrio cholerae MZO-2]
          Length = 578

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 105/263 (39%), Gaps = 28/263 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229
           +++  L+I    QV ++  I  V+   L+++G +  +  ++   S               
Sbjct: 316 EIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLL 374

Query: 230 ----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                        +      +     F V  +      +  L AL+  +    ++ P L 
Sbjct: 375 ADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLI 434

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
             + Q A    G +  Y   SSS+GA++V      + L  TP +    R+ L +      
Sbjct: 435 TTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDR 493

Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
               +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGA
Sbjct: 494 RGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGA 553

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFR +     ++E+ I  TP +V
Sbjct: 554 LFRRTYEQMGKSELLIFVTPKVV 576


>gi|162419434|ref|YP_001608044.1| putative outer membrane porin HofQ [Yersinia pestis Angola]
 gi|165936209|ref|ZP_02224778.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166213214|ref|ZP_02239249.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399124|ref|ZP_02304648.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418934|ref|ZP_02310687.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425621|ref|ZP_02317374.1| protein transporter HofQ [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470614|ref|ZP_02335318.1| protein transporter HofQ [Yersinia pestis FV-1]
 gi|229836369|ref|ZP_04456536.1| predicted fimbrial transporter [Yersinia pestis Pestoides A]
 gi|229840006|ref|ZP_04460165.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842087|ref|ZP_04462242.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904612|ref|ZP_04519723.1| predicted fimbrial transporter [Yersinia pestis Nepal516]
 gi|162352249|gb|ABX86197.1| protein transporter HofQ [Yersinia pestis Angola]
 gi|165915823|gb|EDR34431.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166205512|gb|EDR49992.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962928|gb|EDR58949.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051628|gb|EDR63036.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055311|gb|EDR65105.1| protein transporter HofQ [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229678730|gb|EEO74835.1| predicted fimbrial transporter [Yersinia pestis Nepal516]
 gi|229690397|gb|EEO82451.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696372|gb|EEO86419.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229706437|gb|EEO92444.1| predicted fimbrial transporter [Yersinia pestis Pestoides A]
 gi|320013284|gb|ADV96855.1| putative fimbrial transporter [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 500

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  +  + L+++G +  +    G+++     F  +      +    F V  +
Sbjct: 269 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 328

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +   LE+   +  +A P L     Q+AS   G    Y        A ++   
Sbjct: 329 GGRLLELELSA-LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 387

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P I +  G+  M     ++  T V +  G TI
Sbjct: 388 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 447

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +Q    +PLL+ IP+LGA+FR     +   E+ I  TP L+
Sbjct: 448 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLI 498


>gi|262189810|ref|ZP_06048151.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae CT 5369-93]
 gi|262034306|gb|EEY52705.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae CT 5369-93]
          Length = 571

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  V+   L+++G +  +  ++   S              
Sbjct: 308 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGL 366

Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +      +     F V  +      +  L AL+  +    ++ P L
Sbjct: 367 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 426

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A    G +  Y   SSS+GA++V      + L  TP +    R+ L +     
Sbjct: 427 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 485

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LG
Sbjct: 486 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 545

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR +     ++E+ I  TP +V
Sbjct: 546 ALFRRTYEQMGKSELLIFVTPKVV 569


>gi|237809367|ref|YP_002893807.1| type IV pilus secretin PilQ [Tolumonas auensis DSM 9187]
 gi|237501628|gb|ACQ94221.1| type IV pilus secretin PilQ [Tolumonas auensis DSM 9187]
          Length = 702

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
           K ++ +L++A   QV ++  +  V   +   +G +  +T  ++  S S +          
Sbjct: 437 KDMIKVLDVA-VKQVVIEARMVTVTDGVEDALGIRWGVTDINTNGSTSGSIEGLDTAATG 495

Query: 232 -------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                        A       +    F V  + D    +  L ALE       ++ P +T
Sbjct: 496 ETPAIDDRLNVNLAAAPSSGTAASIAFQVAKLADGSLLDLELSALENENKAEIISSPRVT 555

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS- 337
             + + A    G +  Y   S+S+GAT+++     + L  TP +     + L +      
Sbjct: 556 TANQKEALIEQGYEIPYNE-SASSGATTISFKKAVLSLKVTPQITPDNNVILDLHVTQDD 614

Query: 338 --EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             + V   N G   +   +   T V + +G T+VL G+    I++    IP+L  IP +G
Sbjct: 615 IYQDVNTGNGGTAKALSTQAITTQVLVKNGETLVLGGIYNRSIKKTVNKIPVLGDIPGVG 674

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LFRN+     + E+ I  TP +V
Sbjct: 675 VLFRNTVNTNTKKELLIFVTPKIV 698


>gi|225077283|ref|ZP_03720482.1| hypothetical protein NEIFLAOT_02342 [Neisseria flavescens
           NRL30031/H210]
 gi|224951427|gb|EEG32636.1| hypothetical protein NEIFLAOT_02342 [Neisseria flavescens
           NRL30031/H210]
          Length = 710

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 30/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------- 225
           +K+++ L++    QV ++  I E      + +G +    G+                   
Sbjct: 438 RKLIDELDVPT-RQVMVEARIVEAEDTFFRNLGVKFGFVGAKGSRAWGSNWSNAQTNYST 496

Query: 226 -----------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                      P+ S   +      +     ++       +    + A E     +T++ 
Sbjct: 497 KFSSDRGDVDYPTWSLEPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISN 556

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +     + A   SG +  Y+  +SS GATS+T     + L  TP +   G+I + ++ 
Sbjct: 557 PRVLTQDRKEAKIESGTEIPYQEAASS-GATSITFKKAVLGLTVTPNITPDGQIIMTVKI 615

Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
               P+   V++        +  +T   +  GGT+++ G+ +++       +P+L  IP+
Sbjct: 616 NRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPV 675

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422
           +G LF++        E+ I  TP ++  V
Sbjct: 676 VGNLFKSRGKRENRRELLIFITPHIMDNV 704


>gi|317484811|ref|ZP_07943707.1| general secretion pathway protein D [Bilophila wadsworthia 3_1_6]
 gi|316923941|gb|EFV45131.1| general secretion pathway protein D [Bilophila wadsworthia 3_1_6]
          Length = 665

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 117/281 (41%), Gaps = 32/281 (11%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------GPSK 228
           +   ++  L++    QV ++  I EV  +     G   +I G++            G + 
Sbjct: 353 ALSNIVAKLDVV-RKQVFIEALIMEVSSEASFSFGINWAIGGNTGDAAIVGGVSLNGGAV 411

Query: 229 SFAADFGGKFVSEGGDFSVKGVL--------DRFSFETVLHALERATAIRTLAEPTLTAI 280
           S ++    K VS     S+  +L          ++ +++L+A+   + +  LA P L  +
Sbjct: 412 SLSSSGANKTVSLPAGVSIGAILKDAITVGNTSYNIQSILNAVRGNSDVDVLATPQLLTL 471

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTE 335
             + AS        +   S++      T       D GV L  TP +   G + L ++ E
Sbjct: 472 DNEEASVEVVDNIPFTKESTTRNDNDFTTQSMDYKDVGVKLKITPRISDDGSLRLEVEQE 531

Query: 336 VSEPVIG----VNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           VS    G     N   +  P+ R R   TT+ L    T V+ GLL D     +  +P L 
Sbjct: 532 VSRVTQGLITLTNGDQLVAPTTRKRLVKTTILLQDSQTAVIGGLLDDQKTYNQSEVPGLG 591

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSR 429
            IP+LG LF++      +T +FI  TP +++  A   DL+R
Sbjct: 592 SIPVLGWLFKSRNKKSTQTNLFIFITPKVIRNAADSADLTR 632


>gi|238783115|ref|ZP_04627141.1| Protein transporter HofQ [Yersinia bercovieri ATCC 43970]
 gi|238715911|gb|EEQ07897.1| Protein transporter HofQ [Yersinia bercovieri ATCC 43970]
          Length = 405

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L+++G +  +  S    S     F  +           F+V  +
Sbjct: 174 QQVQLAAHIVTMSRENLQELGVRWGMGESQHATSLRVNDFNVNLPLANSVVNAGFNVARI 233

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +    E+   +  +A P L A   Q+AS   G    Y       GA S+   
Sbjct: 234 GGRLLELELSAL-EQENQVDIIASPRLVASHLQTASIKQGSDIPYAVARGDKGAVSIEFK 292

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +  GD  +     ++  T + +  G TI
Sbjct: 293 EAVLGMEVTPKILRNGKITLNLKISQNMPGMTIKRGDTEALLIDKQEIKTQITVNDGETI 352

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +    Q    +P+L+ IP LGALF+     +   E+ I  TP L+
Sbjct: 353 VLGGIFQQKNNQAVNKVPILADIPWLGALFKQDTKQQSRRELVIFITPRLI 403


>gi|256823455|ref|YP_003147418.1| type IV pilus secretin PilQ [Kangiella koreensis DSM 16069]
 gi|256796994|gb|ACV27650.1| type IV pilus secretin PilQ [Kangiella koreensis DSM 16069]
          Length = 701

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 104/249 (41%), Gaps = 12/249 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--SSSGPSKSFAADFGGKFV 239
           ++++  L+I    QV ++  I        + +G +  ++   +S   +  F  +      
Sbjct: 450 RRLVAQLDIP-VRQVLIEARIVTADDGFARDLGSRFGVSDVMNSGEVNGDFNVNLPIANP 508

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +     S   + D    +  L ALE       +A P +   + + A   +G +  Y   +
Sbjct: 509 AGSLGLSFARLQDGIVVDMELSALESENRGEVVASPKVITANQKEAFIKAGEEIPYLQGA 568

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--------NAGDMPSY 351
           SS GA +V   +  + L  TP +   GR+ L +          V         +   P+ 
Sbjct: 569 SS-GAANVQFKEAVLELKVTPQITPDGRVILDLAITQDTRGENVIFTSPDGGGSSGAPAI 627

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++  T V + +G TIVL G+ +      +  +PLL  IP+LG LF+N++    + E+ 
Sbjct: 628 NTQEIGTQVLVDNGETIVLGGIFQHRTTYDESKVPLLGDIPLLGWLFKNTQREDTKQELL 687

Query: 412 IAATPFLVK 420
           I  TP +++
Sbjct: 688 IFVTPKIIE 696


>gi|261339183|ref|ZP_05967041.1| hypothetical protein ENTCAN_05409 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319030|gb|EFC57968.1| general secretion pathway protein D [Enterobacter cancerogenus ATCC
           35316]
          Length = 643

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 110/272 (40%), Gaps = 18/272 (6%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGG 236
           +S +KV++ L+I    QV ++  IAEV+      +G Q +    G   G +    +    
Sbjct: 328 NSLEKVIDKLDIRRP-QVLVEAIIAEVQDGNGMDLGVQWTGKHGGVQFGATGLPISQVKN 386

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295
             +       +        F  ++ AL   +    L+ P++  +  + ASF  G      
Sbjct: 387 GTMKGTAFTGLATGFFNGDFGALVTALSTGSKNDILSTPSVVTLDNKEASFNVGQDVPVL 446

Query: 296 ---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPS 350
              +T S      SV     G  L   P +     I L+I+ EVS         A   P+
Sbjct: 447 SGSQTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDASATEDASLGPT 506

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+VL GL+++  ++    +PLL  IP++G LFR +  +  +  +
Sbjct: 507 FNTRTINNEVMVHSGQTVVLGGLMENVTKETVSKVPLLGDIPLVGQLFRYTSEDTSKRNL 566

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
            +     +++          DD+YS     K 
Sbjct: 567 MVFIHTTVLRD---------DDNYSAASKEKY 589


>gi|241664484|ref|YP_002982844.1| type IV pilus secretin PilQ [Ralstonia pickettii 12D]
 gi|240866511|gb|ACS64172.1| type IV pilus secretin PilQ [Ralstonia pickettii 12D]
          Length = 721

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 100/249 (40%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------------PSKSF 230
            QV ++  I E      + +G +      ++G                       P+ SF
Sbjct: 469 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 528

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 529 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 588

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV+     + L  TP +   G I L +  +V++  +G+   +  +
Sbjct: 589 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLDV--DVNKDSVGIQTTNGFA 645

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++      TE+
Sbjct: 646 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 705

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 706 LVFLTPRVL 714


>gi|309782882|ref|ZP_07677602.1| type IV pilus biogenesis protein PilQ [Ralstonia sp. 5_7_47FAA]
 gi|308918306|gb|EFP63983.1| type IV pilus biogenesis protein PilQ [Ralstonia sp. 5_7_47FAA]
          Length = 719

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 100/249 (40%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------------PSKSF 230
            QV ++  I E      + +G +      ++G                       P+ SF
Sbjct: 467 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 526

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 527 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 586

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV+     + L  TP +   G I L +  +V++  +G+   +  +
Sbjct: 587 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLDV--DVNKDSVGIQTTNGFA 643

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++      TE+
Sbjct: 644 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 703

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 704 LVFLTPRVL 712


>gi|167855583|ref|ZP_02478343.1| type II secretory pathway, component HofQ [Haemophilus parasuis
           29755]
 gi|167853274|gb|EDS24528.1| type II secretory pathway, component HofQ [Haemophilus parasuis
           29755]
          Length = 420

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 13/249 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  L+   E Q+ ++  I  +  + L+Q+G +  +   +    K      G    +  
Sbjct: 164 QLIETLDKPTE-QIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNN 222

Query: 243 GDFSVK-----------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            + +               ++       L ALE    I  +A P L     + AS   G 
Sbjct: 223 LNVNFPVNPSASVALQIAAINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGT 282

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           +  Y   S     T +   +  + L  TP +    +I L +    + P   +N   M + 
Sbjct: 283 EIPYAMYSKKKEITDIEFREAVLGLEVTPHISKQNQILLDLAISQNSPNNQMN-NMMATI 341

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++ +T V    G TIVL G+ +  I + ++ +PLL  IP++  LF  +R    + E+ 
Sbjct: 342 DKQEINTQVLAKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKRELV 401

Query: 412 IAATPFLVK 420
           I  TP++VK
Sbjct: 402 IFVTPYIVK 410


>gi|222083138|ref|YP_002542503.1| general secretion pathway protein D [Agrobacterium radiobacter K84]
 gi|221727817|gb|ACM30906.1| general secretion pathway protein D [Agrobacterium radiobacter K84]
          Length = 714

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/265 (26%), Positives = 114/265 (43%), Gaps = 14/265 (5%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
             Q      ++++  L++    QV ++  IAEV  +   + G +        G   S  +
Sbjct: 423 TTQREYEHIEQILKQLDVM-PTQVLIEAVIAEVTLNDQLKFGLRWFFENGKFGVGLSDLS 481

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           D        G            +    L+AL   T +  ++ PTL A++ Q A+   G Q
Sbjct: 482 DGSTGASFPG----FAWTFASSNVGATLNALSSITNVNIVSAPTLMALNNQKATLQVGDQ 537

Query: 293 HLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
               T  S++  +S       +   D GV+L   P V S GR+ L IQ EVS  V    +
Sbjct: 538 VPIVTQQSASTTSSNTAIVSSIDLKDTGVILTVLPRVNSSGRVMLDIQQEVSNVVKTTTS 597

Query: 346 G-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           G D P+ + RK  T V +    ++ L GL++         +P+L K+PI G  F+N    
Sbjct: 598 GIDSPTIQQRKLSTKVIVDDNESVALGGLIQQSNTLNHSQVPILGKMPIFGNAFKNKEDT 657

Query: 405 REETEIFIAATPFLVKPV-AMRDLS 428
             +TE+ I   P +V+ V   RD++
Sbjct: 658 INKTELIIFIKPRIVRDVRQARDVT 682


>gi|187930316|ref|YP_001900803.1| type IV pilus secretin PilQ [Ralstonia pickettii 12J]
 gi|187727206|gb|ACD28371.1| type IV pilus secretin PilQ [Ralstonia pickettii 12J]
          Length = 721

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 100/249 (40%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------------PSKSF 230
            QV ++  I E      + +G +      ++G                       P+ SF
Sbjct: 469 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 528

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 529 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 588

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV+     + L  TP +   G I L +  +V++  +G+   +  +
Sbjct: 589 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLDV--DVNKDSVGIQTTNGFA 645

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++      TE+
Sbjct: 646 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 705

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 706 LVFLTPRVL 714


>gi|238758713|ref|ZP_04619887.1| Protein transporter HofQ [Yersinia aldovae ATCC 35236]
 gi|238703010|gb|EEP95553.1| Protein transporter HofQ [Yersinia aldovae ATCC 35236]
          Length = 437

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L ++G +      T   +    +F  +      +    F+V  +
Sbjct: 206 QQVQLAAHIVTMSRENLHELGVRWGMDEATQPRALRVNNFNVNLPLPNSALSAGFNVARI 265

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +    E+   +  +A P L     Q+AS   G    Y       G  ++   
Sbjct: 266 GGRLLELELSAL-EQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGVPTIEFK 324

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +  GD  +     ++  T + +  G TI
Sbjct: 325 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAIKRGDSEALLIDKQEIKTQITVNDGETI 384

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +    Q    +P+L+ IP+LGALF+     +   E+ I  TP L+
Sbjct: 385 VLGGIFQQKNNQGINKVPILADIPLLGALFKQDVRAQTRRELVIFITPRLI 435


>gi|229524610|ref|ZP_04414015.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae bv. albensis
           VL426]
 gi|229338191|gb|EEO03208.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae bv. albensis
           VL426]
          Length = 571

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 105/264 (39%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  V+   L+++G +  +  ++   S              
Sbjct: 308 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGL 366

Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +      +     F V  +      +  L AL+  +    ++ P L
Sbjct: 367 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 426

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A    G +  Y   SSS+GA +V      + L  TP +    R+ L +     
Sbjct: 427 ITTNKQPAYIEQGTEIPYLE-SSSSGAPTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 485

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LG
Sbjct: 486 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 545

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR +     ++E+ I  TP +V
Sbjct: 546 ALFRRTYEQMGKSELLIFVTPKVV 569


>gi|94312199|ref|YP_585409.1| type II and III secretion system protein [Cupriavidus metallidurans
           CH34]
 gi|93356051|gb|ABF10140.1| pili assembly protein PilQ [Cupriavidus metallidurans CH34]
          Length = 710

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 96/247 (38%), Gaps = 22/247 (8%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------------PSKSFAADF 234
            QV ++  I E      + +G +       SG                   P+ S  A  
Sbjct: 462 RQVIIEARIVEASDTFSRNLGVKLGFALPKSGSSLSSNYGNSLPNATNDGTPALSLPAAA 521

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                     FS+         +  L ALE     + ++ P +   +   A    G +  
Sbjct: 522 INSVNPATAAFSIFNAAAGRFLDLELSALEADGKGKIISSPRVVTANNIKALIEQGTELP 581

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           Y++ +SS GATSV      + L  TP +   G + L +  +V++  +G+   +  +   +
Sbjct: 582 YQSATSS-GATSVQFRKANLKLEVTPQITPEGNVLLDV--DVNKDSVGIRTDNGFAIDTK 638

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T V + +GGT+V+ G+   +       +P L  +P+LG  F+N+      TE+ +  
Sbjct: 639 HVQTQVLVENGGTVVIGGIYSQEESNTVNKVPWLGDLPVLGNFFKNNAKVNNRTELLVFL 698

Query: 415 TPFLVKP 421
           TP ++  
Sbjct: 699 TPRVLND 705


>gi|323939252|gb|EGB35464.1| general secretion pathway protein D [Escherichia coli E482]
          Length = 504

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q        V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 179 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 237

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 238 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 297

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 298 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 357

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PLL
Sbjct: 358 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 417

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 418 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 477

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 478 KALVGSEDLPVLDENTFN 495


>gi|238758913|ref|ZP_04620085.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
 gi|238702870|gb|EEP95415.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
          Length = 641

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 113/281 (40%), Gaps = 14/281 (4%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V++ L++    QV ++  I E +      +G Q +      G +    +        +G
Sbjct: 329 QVIDKLDVR-RAQVLVEAIIVETQNGEGLNLGIQWA-NKFLGGVNFIKNSGATASSSEKG 386

Query: 243 GDFSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
               + G+   F   +++ +  AL   +    LA P++  +    A F  G +    T +
Sbjct: 387 IPMMIAGLTAGFYKGNWDGLFSALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLTST 446

Query: 300 SSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYR 352
            +T       S++    GV+L   P +     + L I+ EVS      +         + 
Sbjct: 447 QTTATDKVYNSISRQPVGVMLKVKPQINQGDSVLLEIRQEVSSVADSTDTNTNNLGSVFN 506

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  +  V + SG T+V+ GLL     ++   +P L  IP++G LFR ++   E + + +
Sbjct: 507 KRVVNNAVLVRSGETVVVGGLLDKKTNRIINKVPFLGDIPLIGGLFRQTKEKVERSNLIL 566

Query: 413 AATPFLVKPVAMRDLSRPDD--HYSVEDDAKAFFFNRVNKI 451
              P +++ V    L        Y+V ++ +    + +  I
Sbjct: 567 FIKPTILREVDDYSLVTSGKYSEYNVSNNKEYSIADDMKLI 607


>gi|238754545|ref|ZP_04615899.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
 gi|238707176|gb|EEP99539.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
          Length = 674

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 110/280 (39%), Gaps = 21/280 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGG 236
           +KV+  L+I    QV ++  I E +      +G Q       + G  S    +      G
Sbjct: 359 EKVIEKLDIR-RAQVLVEAIIVEAQDGEGINLGIQWDTKQKKVGGFISYNKSNLGNIQNG 417

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295
                 G   +     R ++  +  AL   ++   LA P++  +    A F+ G +    
Sbjct: 418 VTSIANGISGLTTGFYRGNWSGLFTALATNSSNEILATPSIVTLDNMDAEFSVGQEVPVL 477

Query: 296 ---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMP 349
              +T S+     +++    G++L   P +     + L I+ EVS      N        
Sbjct: 478 SSQQTTSTDKVYNTISRQSVGIMLKVKPQINKGDSVLLEIRQEVSSVAENSNVDKDNIGS 537

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R  +  V + SG T+V+ GLL   +  +   IPLL  IPI+G LFR  +   E+  
Sbjct: 538 TFNKRVVNNAVLVKSGETVVVGGLLDKKVSNVINKIPLLGDIPIIGNLFRQKKEKIEKRN 597

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           + +   P +++          DD+ S   +    F  + N
Sbjct: 598 LILFIKPTIIR--------ESDDYLSTTSEKSKTFNEKNN 629


>gi|88866562|gb|ABD57336.1| TapQ [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 730

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/270 (22%), Positives = 109/270 (40%), Gaps = 31/270 (11%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------ 232
           S+ K ++++L+I    QV ++  +  +     + +G +  +T +    + +  +      
Sbjct: 459 SNIKPMLDILDIP-VKQVVIEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGSIEGNDG 517

Query: 233 ---------------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                                +      +    F V  + D    +  L ALE+ +    
Sbjct: 518 SGNNNGGSAITRPGVEDRMNVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEI 577

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P +T  + + A    G +  Y   SSS+GATSVT     + L  TP +    R+ L 
Sbjct: 578 IASPRVTTANQKPALIEQGTEIPYVE-SSSSGATSVTFKKAVLSLKVTPQITPDNRVILD 636

Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +          +    GD  S   +   T V + +G T+VL G+ +  I+     +PLL 
Sbjct: 637 LTVTQDTKGETVPTGTGDAVSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLG 696

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP LG LFR +    ++ E+ I  TP +V
Sbjct: 697 DIPGLGVLFRKTTSENKKRELLIFVTPKIV 726


>gi|90413595|ref|ZP_01221585.1| putative fimbrial assembly protein [Photobacterium profundum 3TCK]
 gi|90325368|gb|EAS41857.1| putative fimbrial assembly protein [Photobacterium profundum 3TCK]
          Length = 565

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 103/264 (39%), Gaps = 26/264 (9%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---------- 229
           S K +++ L+I    QV ++  I  +    + ++G +  ++  +   +            
Sbjct: 302 SIKDIISALDIP-VKQVQIEARIVTINEGDVDELGVRWGVSKHNGNFTLGGSIESNLGSV 360

Query: 230 ------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                          +   +             +     +  L AL+  +    ++ P L
Sbjct: 361 GLLKDDVSVDDFLNVNLAAQKAGASSIAFQIAKVGDILLDLELSALQSESKAEIISSPRL 420

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q+A    G +  Y   SSS GA S+      + L  TP +    ++ L +     
Sbjct: 421 VTTNKQTAYIEQGTEIPYLEASSS-GAVSIDFKKAVLSLMVTPQITPDNKLVLDLVVTQD 479

Query: 338 EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           EP   V  G  +  S   ++  T V + +G TIVL G+ +  + +    +PLL  +P LG
Sbjct: 480 EPGKTVVTGIGEAVSINTQRIGTQVLVENGETIVLGGIYQHQMNKSVSKVPLLGDLPYLG 539

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR+S     + E+ I  TP +V
Sbjct: 540 ALFRHSLEEMGKRELLIFITPKIV 563


>gi|219872291|ref|YP_002476666.1| competence protein E/type II secretory pathway, component HofQ
           [Haemophilus parasuis SH0165]
 gi|219692495|gb|ACL33718.1| competence protein E/type II secretory pathway, component HofQ
           [Haemophilus parasuis SH0165]
          Length = 420

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 13/249 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  L+   E Q+ ++  I  +  + L+Q+G +  +   +    K      G    +  
Sbjct: 164 QLIETLDKPTE-QIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNN 222

Query: 243 GDFSVK-----------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            + +               ++       L ALE    I  +A P L     + AS   G 
Sbjct: 223 LNVNFPVNPSASVALQIAAINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGT 282

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           +  Y   S     T +   +  + L  TP +    +I L +    + P   +N   M + 
Sbjct: 283 EIPYAMYSKKKEITDIEFREAVLGLEVTPHISKQNQILLDLAISQNSPNNQMN-NMMATI 341

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++ +T V    G TIVL G+ +  I + ++ +PLL  IP++  LF  +R    + E+ 
Sbjct: 342 DKQEINTQVLAKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKRELV 401

Query: 412 IAATPFLVK 420
           I  TP++VK
Sbjct: 402 IFVTPYIVK 410


>gi|152998114|ref|YP_001342949.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
 gi|150839038|gb|ABR73014.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
          Length = 393

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 5/227 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ +   IA+V R    Q G        S G   S         ++         +   
Sbjct: 168 KQIEISAQIAQVSRTAQSQFGVNWQA-KLSDGVRSSIGGAVDLGALTPTTSLDFSSIGGS 226

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 L  +E       +++P +    G  A   SG +  Y+TVS      S+      
Sbjct: 227 GLLALTLDMMESEGLANVVSKPKIVTSEGLPARIESGTEVPYQTVSDD--KVSIEFRQAV 284

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           ++L  TP V   G I L +        +G     +PS +  +  T V + +  T+VL G+
Sbjct: 285 LMLEVTPFVKDSGHILLSLTIHQD--SVGDLVNGVPSLKTNRLKTQVVVKNQETLVLGGV 342

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +++  + +  +P  S IP LG LF+     +E+ E+ +  TP L++
Sbjct: 343 FREERFESESRVPFFSDIPWLGELFKRQSEQQEKVELLVFITPKLLQ 389


>gi|160896756|ref|YP_001562338.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
 gi|160362340|gb|ABX33953.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
          Length = 819

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 135/305 (44%), Gaps = 23/305 (7%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           +    TV   G VR + D     EL+ + L  S   +Y     +  +  L++    Q+ +
Sbjct: 490 QGTGSTVANLGTVRVMAD-----ELNNSVLVWSTPAEYER--IEAALKRLDLP-PTQILI 541

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--------DFGGKFVSEGGDFSVKGV 250
           + +I EV  +   Q G Q + +G       S +                + G  F+    
Sbjct: 542 EASIVEVTLNDGLQYGLQWAFSGDVGNNGYSGSGLISTDGKRTTADIAAAIGQGFNYTLK 601

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGA 304
               + +  L+AL   T ++ +A P+L  +   +A+ + G Q  Y       T   S+ A
Sbjct: 602 NSAGTIKAALNALSSKTNVKVVASPSLMVLDNHTAAISVGTQQPYRSGEISTTTVGSSNA 661

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
            S    D GV L  TP+V +   + + +   V++           ++  R+  + V + S
Sbjct: 662 VSYQYKDTGVNLQVTPSVNAGNIVTMTVNQMVTDVGAKDEITQQVTFLQRQLSSRVSVRS 721

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVA 423
           G +IV+ GL++++    + GIP+L ++P++G LF ++  +   TE+ +  TP +V+  V 
Sbjct: 722 GESIVMGGLIQENTSDGRSGIPVLHELPVVGNLFGSTNNSMRRTELLVIITPRVVRTDVD 781

Query: 424 MRDLS 428
           +R++S
Sbjct: 782 IREVS 786


>gi|163802236|ref|ZP_02196131.1| general secretion pathway protein D precursor [Vibrio sp. AND4]
 gi|159174041|gb|EDP58851.1| general secretion pathway protein D precursor [Vibrio sp. AND4]
          Length = 675

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 120/321 (37%), Gaps = 55/321 (17%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSF-- 230
           + + V+  L+I    QV ++  I E+       +G Q         I   ++G S     
Sbjct: 330 ALQDVIAQLDIR-RAQVLIEALIVEMSEGDGINLGVQWGNLDTGAVIQYGNTGASIGNVM 388

Query: 231 -----------------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
                                        + D+     + GG       L    +  ++ 
Sbjct: 389 VGLEEAKDQTRTEYYTNSDGERTPYDVTESGDYSTLAAALGGVNGAAMSLVMGDWTALIS 448

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVL 316
           A+   +    L+ P++T +    ASF  G +    T S+S         +V   + G+ L
Sbjct: 449 AVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTSGANNDNPFQTVDRKEVGIKL 508

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
              P +     + L I+ EVS  +    A D+  +  R+ +T+V +  G  +VL GL+ +
Sbjct: 509 KVVPQINEGDSVHLDIEQEVSNVLGAEGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDE 567

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
              + +  +PLL  IP++G LF+++    ++  + +   P +++     D          
Sbjct: 568 RAMESESKVPLLGDIPVIGQLFKSTSTQTQKRNLMVFIKPTIIRDGMTADGIT------- 620

Query: 437 EDDAKAFFFNRVNKIYGPKEA 457
               + + F R  ++Y  +E 
Sbjct: 621 ---QRKYNFIRAEQLYKAQEG 638


>gi|116048592|ref|YP_792609.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115583813|gb|ABJ09828.1| probable type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 803

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 29/328 (8%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++LL+     QV ++  I EV  D   + G Q  
Sbjct: 449 QADATTNTLLISAPEPLYRN--LREVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQ 505

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
                                + G                 G   + G+      + +  
Sbjct: 506 AGNLGGNGVFGGVNFGQSALNTAGKNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLAR 565

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
           AL+       L+ P L  +  +SAS   G    + +         +S+    ++   D G
Sbjct: 566 ALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVG 625

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L +  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 626 LKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGL 685

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L+D++Q   +G+P LS +P +G+LFR  + +R +T + +   P++V+  A    S   + 
Sbjct: 686 LQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMVFLRPYIVRDAAAG-RSITLNR 744

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           Y     A+     R +   G  +A  + 
Sbjct: 745 YDFIRRAQQRVQPRHDWSVGDMQAPVLP 772


>gi|145300643|ref|YP_001143484.1| general secretion pathway protein D [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|1170051|sp|P45778|GSPD_AERSA RecName: Full=General secretion pathway protein D; Flags: Precursor
 gi|516351|emb|CAA56668.1| ExeD [Aeromonas salmonicida]
 gi|142853415|gb|ABO91736.1| general secretion pathway protein D [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 678

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 117/319 (36%), Gaps = 42/319 (13%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----------- 194
           VL G+  +I+  ++    +    + S        S+ +  N L I  +            
Sbjct: 285 VLKGVSTSIEADKKGGGTTAGGGNASIGGGKLAISADETTNALVITAQPDVMAELEQVVA 344

Query: 195 -------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------E 241
                  QV ++  I E+       +G Q + T              G   ++       
Sbjct: 345 KLDIRRAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTDTNLPIGSVAIAAKDYNEN 404

Query: 242 GGDFSVKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G    +  +   F+          +  ++ AL  +T    L+ P++  +  + ASF  G 
Sbjct: 405 GTTTGLADLAKGFNGMAAGFYHGNWAALVTALSTSTKSDILSTPSIVTMDNKEASFNVGQ 464

Query: 292 QHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
           +   ++ S S+        ++     G  L  TP +     + L I+ EVS        G
Sbjct: 465 EVPVQSGSQSSTTSDQVFNTIERKTVGTKLTVTPQINEGDSVLLNIEQEVSSVAQKQATG 524

Query: 347 D---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P++  R     V + SG T+VL GL+ +  Q+    +PLL  IP+LG LFR++  
Sbjct: 525 TADLGPTFDTRTIKNAVLVKSGETVVLGGLMDEQTQEKVSKVPLLGDIPVLGYLFRSTNN 584

Query: 404 NREETEIFIAATPFLVKPV 422
              +  + +   P +++  
Sbjct: 585 TTSKRNLMVFIRPTILRDA 603


>gi|104781447|ref|YP_607945.1| type II secretion system protein XcpQ-2; signal peptide
           [Pseudomonas entomophila L48]
 gi|95110434|emb|CAK15142.1| putative type II secretion system protein XcpQ-2; putative signal
           peptide [Pseudomonas entomophila L48]
          Length = 787

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 28/281 (9%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S ++V++ L+     QV ++  I EV  D   + G Q    G+         A+ GG  +
Sbjct: 457 SLREVIDQLDQR-RAQVVVESLIVEVGEDDANEFGIQWQA-GNLGKNGLFGGANLGGSGL 514

Query: 240 SEG-----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +G                 G   + GV      + +  AL+       L+ P L  +  
Sbjct: 515 GKGPTSIDVLPPGLSVGVVDGTVKIPGVGAVLDLKVLARALKSKGGSNVLSTPNLLTLDN 574

Query: 283 QSASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           ++AS   G    + +         +S+    ++   + G+ L+  P +   G + L +  
Sbjct: 575 EAASIFVGQTIPFVSGQYVTDGGGNSNNPFQTIQREEVGLRLNVRPQISEGGTVKLDVYQ 634

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           EVS      ++        R  DT++ L  G  +VL GLL+D   Q  EGIP LS +P +
Sbjct: 635 EVSSVDQRASSAAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYTQSNEGIPWLSSLPGV 694

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHY 434
           GALFR+ R    +T + +   P++V+   A R ++R    +
Sbjct: 695 GALFRSERRASNKTNLMVFLRPYIVRDANAGRSITRNRYDF 735


>gi|292493619|ref|YP_003529058.1| general secretion pathway protein D [Nitrosococcus halophilus Nc4]
 gi|291582214|gb|ADE16671.1| general secretion pathway protein D [Nitrosococcus halophilus Nc4]
          Length = 767

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 71/312 (22%), Positives = 127/312 (40%), Gaps = 22/312 (7%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDI 209
                 ++ V +     + +      +    K+++ L        QV ++ TIAEV+   
Sbjct: 429 ADDDADEKEVRIIADVENNALLISATSRDYDKILSALRQLDIPPRQVLVEATIAEVQLTD 488

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK----------GVLDRFSFETV 259
             Q G Q          + + A +F       G    V+           + D      +
Sbjct: 489 NLQYGLQWFFRNEVGEFTGTGAVNFSTDVGDNGFLQGVEGLLGGGGFTYALTDDSIVRAL 548

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDY 312
           L  L   + +  L+ P L A+  Q+A+   G Q    T        + +T  + V   D 
Sbjct: 549 LRTLASDSKLNVLSSPQLLALDNQTAAIRVGDQVPILTGQTAGLAGTGNTLTSQVQFRDT 608

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELPSGGTIV 369
           GV+L  TP V + GR+ L I+ EV++    V  G      ++  R  ++ V + SG TIV
Sbjct: 609 GVLLTVTPRVNAGGRVTLEIRQEVTDVGDPVTVGSDIQNFTFLQRTFESVVTVQSGETIV 668

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GL++D       G+P L K+P +G LF ++  +++ TE+ +  TP +V+      L  
Sbjct: 669 LGGLIRDRDSFTDSGVPFLYKLPFIGPLFGSTTRDKQRTELIVLMTPRVVRDQHEARLVT 728

Query: 430 PDDHYSVEDDAK 441
            +    + + + 
Sbjct: 729 EEFRQKLRNASD 740


>gi|330828668|ref|YP_004391620.1| type IV pilus secretin PilQ [Aeromonas veronii B565]
 gi|328803804|gb|AEB49003.1| Type IV pilus secretin PilQ [Aeromonas veronii B565]
          Length = 741

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 111/270 (41%), Gaps = 31/270 (11%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------ 232
           SS K+++++L+I    QV ++  +  +     + +G +  +T +    + +  +      
Sbjct: 470 SSIKRMLDILDIP-VKQVVIEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGSIAGNDG 528

Query: 233 ---------------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                                +      +    F V  + D    +  L ALE+ +    
Sbjct: 529 SGNNNGGSTITRPTADDRLNVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEI 588

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P +T  + + A    G +  Y   SSS+GATSVT     + L  TP +    R+ L 
Sbjct: 589 IASPRVTTANQKPALIEQGTEIPYVE-SSSSGATSVTFKKAVLSLKVTPQITPDNRVILD 647

Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +          +    GD  S   +   T V + +G T+VL G+ +  I+     +PLL 
Sbjct: 648 LTVTQDTKGETVPTGTGDAVSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVTKVPLLG 707

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP LGALFR +    ++ E+ I  TP +V
Sbjct: 708 DIPGLGALFRKTTSENKKRELLIFVTPKIV 737


>gi|311695246|gb|ADP98119.1| type II and III secretion system protein [marine bacterium HP15]
          Length = 663

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 108/267 (40%), Gaps = 27/267 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--- 235
             +++++  L++    QV ++  I E+  ++ + +G Q ++   S   +     +FG   
Sbjct: 347 QEAEQIVAALDVR-RAQVMIEAAIVEISDELGQDLGVQVAVGDESGESTPVAGTNFGNVG 405

Query: 236 ------------GKFVSEGGDFSVKGVL----DRFSFETVLHALERATAIRTLAEPTLTA 279
                       G  ++        G      +  S+  +L AL  + A   L+ P++  
Sbjct: 406 RSLGEVLSAILTGSAITPATGGITIGAGQRNENGVSWGVLLQALSTSAAANLLSTPSIIT 465

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           +  Q +    G    ++T  S+          T++   D G+ L  TPT+ + G + L +
Sbjct: 466 LDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERRDIGLTLKVTPTISADGLVRLVV 525

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           +         +          R+  TTV    G TIVL GL +DD Q  K  +PLL  IP
Sbjct: 526 EQTTESVADSIENASDIVTNKREIKTTVLADDGETIVLGGLTRDDYQVNKSKVPLLGDIP 585

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
            +G LF +    R +  + +   P ++
Sbjct: 586 FVGRLFSSESERRVKRNLLVFLRPKIM 612


>gi|262045226|ref|ZP_06018252.1| protein transporter HofQ [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037436|gb|EEW38681.1| protein transporter HofQ [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 331

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           QV L   I  +    L+++G +     + +   SG   + ++D      S    F++ G 
Sbjct: 99  QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNI-GK 157

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           ++    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 158 INGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 217

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TPTVL  GR+ L+++   + P  V+    G+  +   ++ +T VE+ SG T+
Sbjct: 218 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETL 277

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 278 ALGGIFSQKNKTARDSVPLLDDIPVLGRLFRRDGKDNERRELVVFITPRIL 328


>gi|220933412|ref|YP_002512311.1| general secretion pathway protein D [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994722|gb|ACL71324.1| general secretion pathway protein D [Thioalkalivibrio sp. HL-EbGR7]
          Length = 655

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 116/319 (36%), Gaps = 49/319 (15%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
              NI+    ++ +VL G    ++D                         + V+N L++ 
Sbjct: 295 GGINIQAHESTNALVLSGPPDAVRDL------------------------RAVINQLDVR 330

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------- 244
              QV ++  IAEV  D + ++G Q  +   +SG         G   +   G        
Sbjct: 331 -RAQVLVEAVIAEVSYDKITELGVQWGVGNPNSGVGVINFNRSGSGIIGVAGGIDAFLRG 389

Query: 245 -------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                            G     +   ++ AL   ++   L+ P+L  +  + A    G 
Sbjct: 390 AVATPPNLGDGAFLGGIGTSGSTTIAALVRALAGDSSSNILSTPSLMTMDNEEAEIVVGQ 449

Query: 292 QHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
              +        S     ++   D GV L   P +     I L I+ EVS+   G  A  
Sbjct: 450 NVPFIAGRSIEQSGQAFDTIQRQDVGVKLRIKPQINEGNSIRLEIEQEVSQVAAGATAAA 509

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
                 R   T V +  G  +VL GL+ D + Q ++ +P L  IP +G LFR     +E+
Sbjct: 510 DLVTNKRSLRTIVMVDDGEMVVLGGLIDDVLVQTQDRVPGLGSIPGVGRLFRYDTARKEK 569

Query: 408 TEIFIAATPFLVKPVAMRD 426
             + +   P +V+  A+++
Sbjct: 570 RNLMVFLHPVIVRDSAVQE 588


>gi|161830646|ref|YP_001597710.1| type II and III secretion system family protein [Coxiella burnetii
           RSA 331]
 gi|161762513|gb|ABX78155.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii RSA 331]
          Length = 349

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 122/279 (43%), Gaps = 7/279 (2%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G++     +   V  ++ ++ +   + Y   S   +++ L+I    QV +K  I  +  
Sbjct: 59  SGILSKFGYAAADVRTNQLWIREEQTHIYLIQS---LVSQLDIPI-HQVLIKARIISISD 114

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERA 266
             L  +G       +++  +     D     +  G  D  +    +    +  L ALE+ 
Sbjct: 115 HNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQFGVADIPIIKFKNGQLLDLTLSALEQE 174

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + L+ P L   + Q+A   SG    Y+  +   G TSVT     + L  TP VL   
Sbjct: 175 GRAQVLSCPELMTNNRQTAIIESGEAIPYQEKTGQ-GNTSVTFKKATLRLKVTPVVLPGN 233

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           RI L++     + +       +P+ + ++  T V + +  T+VL G+ +   QQ + GIP
Sbjct: 234 RILLQLNVNQDK-MSSFLVNGVPTIQTQQLTTKVMVNNQETVVLGGIYEQSTQQEEAGIP 292

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            L KIPILG LFR+ + + E  ++ I  TP ++ P   R
Sbjct: 293 GLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISPYEKR 331


>gi|242238911|ref|YP_002987092.1| general secretion pathway protein D [Dickeya dadantii Ech703]
 gi|242130968|gb|ACS85270.1| general secretion pathway protein D [Dickeya dadantii Ech703]
          Length = 714

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 74/357 (20%), Positives = 141/357 (39%), Gaps = 34/357 (9%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           T+++ G    ++   +   L  T      R+       ++V+N L+I    QV ++  IA
Sbjct: 361 TIIIQGKEVIMRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLVEAIIA 413

Query: 204 EVRRDILKQIGFQHS------ITGSSSGPSKSFA----------ADFGGKFVSEGGDFS- 246
           EV+      +G Q +         +++G   S A                F S  G F+ 
Sbjct: 414 EVQDADGLNLGIQWANKRAGMTQYTNTGMPISTAIVGVDQYRDDGTLTSNFSSALGSFNG 473

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
           +       ++  +L AL   +    LA P++  I    A+F  G +    T S +T A  
Sbjct: 474 IAAGFYHGNWSMLLTALSSNSKNDVLATPSIVTIDNMEATFNVGQEVPVLTGSQTTSADN 533

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTT 359
             ++V     G+ L   P +     + L+I+ EVS      ++       ++  R  +  
Sbjct: 534 IYSTVERKTVGIKLKVKPQINEGDSVLLQIEQEVSSVADSSSSTSSDLGATFNTRTVNNA 593

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V + +G T+V+ GLL     +    +PLL  IP+LG LFR+      +  + +   P ++
Sbjct: 594 VMVTNGETVVVGGLLNKSTVETDSKVPLLGDIPVLGNLFRSKSLTVSKRNLMLFLRPTII 653

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRV---NKIYGPKEASEVEGQNYKGAIGFIY 473
           +       +  + + + + +      N+V   N +  P   +    +  + AIG  Y
Sbjct: 654 RDRQQYQATSINQYKAFDSEQDLQRSNKVLDSNTLRLPSGGNTYTFRQVQSAIGSFY 710


>gi|254244921|ref|ZP_04938243.1| hypothetical protein PA2G_05797 [Pseudomonas aeruginosa 2192]
 gi|126198299|gb|EAZ62362.1| hypothetical protein PA2G_05797 [Pseudomonas aeruginosa 2192]
          Length = 803

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 29/328 (8%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++LL+     QV ++  I EV  D   + G Q  
Sbjct: 449 QADATTNTLLISAPEPLYRN--LREVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQ 505

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
                                + G                 G   + G+      + +  
Sbjct: 506 AGNLGGNGVFGGVNFGQSALNTAGKNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLAR 565

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
           AL+       L+ P L  +  +SAS   G    + +         +S+    ++   D G
Sbjct: 566 ALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVG 625

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L +  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 626 LKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGL 685

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L+D++Q   +G+P LS +P +G+LFR  + +R +T + +   P++V+  A    S   + 
Sbjct: 686 LQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMVFLRPYIVRDAAAG-RSITLNR 744

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           Y     A+     R +   G  +A  + 
Sbjct: 745 YDFIRRAQQRVQPRHDWSVGDMQAPVLP 772


>gi|293604906|ref|ZP_06687303.1| general secretion pathway protein D [Achromobacter piechaudii ATCC
           43553]
 gi|292816734|gb|EFF75818.1| general secretion pathway protein D [Achromobacter piechaudii ATCC
           43553]
          Length = 791

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 120/311 (38%), Gaps = 31/311 (9%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGG 236
           S ++V++ L+     QV ++  I EV      + G Q    +   +S+G S     + GG
Sbjct: 412 SLREVIDQLDQR-RAQVLVESLIVEVSEQAAAEFGIQWMTGAGNINSNGTSFIGGTNLGG 470

Query: 237 KFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTA 279
             ++  G  S+  +                     +   +  A++       L+ P L  
Sbjct: 471 SGITGNGPTSIDALGSGLSLGVVKGTVDVLGNQVINLGVLARAMQNTGEANILSTPNLLT 530

Query: 280 ISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +  QSAS   G    + T          SS    ++   D G+ L+  P +   G + L 
Sbjct: 531 LDNQSASILVGKTVPFVTGQYVTSGSNGSSNPFQTIEREDVGLKLNIRPQISEGGAVKLD 590

Query: 332 IQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           I  EVS      +          R  DT+V +  G  IVL GLL+D++      +P L  
Sbjct: 591 IYQEVSSIDESRSTPTTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLTSNSVPGLGS 650

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           +P++G+LFR     R +T + +   P++V+  A R  S   D Y     A+     R + 
Sbjct: 651 LPVIGSLFRYDTRKRTKTNLMVFLRPYVVRD-ANRSASVTMDRYDYMRRAQGAAQPRSHW 709

Query: 451 IYGPKEASEVE 461
                +A  + 
Sbjct: 710 ALPDMQAPVLP 720


>gi|260774710|ref|ZP_05883614.1| type IV pilus biogenesis protein PilQ [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609366|gb|EEX35517.1| type IV pilus biogenesis protein PilQ [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 454

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 28/269 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------- 224
            + K ++  L++    QV ++  I  +    L+++G +   + ++               
Sbjct: 188 QAMKAIITALDVP-VKQVQIEARIVSLNEGDLQELGVRWGFSSTNGSHSVGGSIENNLAN 246

Query: 225 ----GPSKSFAADF------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
               G S S   DF           +    F V  +      +  L AL+R +    ++ 
Sbjct: 247 LNLYGDSDSSLDDFLNVNLAATSVNASTIAFQVAKLGSDTLLDLELSALQRESRAEVISS 306

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L   + Q A    G +  Y   +SS GATSV      + L  TP + S  R+ L +  
Sbjct: 307 PRLITTNKQPAYIEQGTEIPYLEAASS-GATSVNFKKAVLSLKVTPQITSDNRLILDLNV 365

Query: 335 EVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
               P  V+    G+  +   ++  T V + +G TIVL G+ +  +    + +PLL  IP
Sbjct: 366 TQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETIVLGGIYQHSVSDTVDQVPLLGDIP 425

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKP 421
           +LG LFR +     ++E+ I  TP +V P
Sbjct: 426 LLGGLFRRTYQQMGKSELLIFVTPTVVAP 454


>gi|302342781|ref|YP_003807310.1| general secretion pathway protein D [Desulfarculus baarsii DSM
           2075]
 gi|301639394|gb|ADK84716.1| general secretion pathway protein D [Desulfarculus baarsii DSM
           2075]
          Length = 746

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 118/286 (41%), Gaps = 23/286 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++V IAEV  D   ++G +      +               +   G        +
Sbjct: 472 PKQVLIEVVIAEVTLDDQLKLGVEWRYLTENGATFSDINLKPDADLLPTSGLVYTIAKTN 531

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------VSSSTGA- 304
              F   L AL +   ++ ++ P L A   QSA    G +    T       +S+STG  
Sbjct: 532 ELLF--TLKALAQKDKLQVISSPLLLAAENQSARILVGREIPIITDLTTSEDISTSTGNK 589

Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTV 360
               S+   D G++L  TP +   G + L I+ EVS+           P++  R A T V
Sbjct: 590 VVDRSIEYRDVGIILTVTPRINDSGVVRLNIRQEVSDVLTDSFGDTGSPAFSQRTATTNV 649

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               G +IVLAGL+++   ++  G+P LS +PILG LF+  +     TE+ +  TP ++ 
Sbjct: 650 VTTDGQSIVLAGLIQETKHKIDSGVPFLSDVPILGYLFKTEKDVDSRTELILTITPHVIH 709

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            +        D  + V+   +   F+R  ++  P  + +  G    
Sbjct: 710 DMN-------DARHIVQSLREQERFSR--QMAAPPPSRQQPGDGLD 746


>gi|218670938|ref|ZP_03520609.1| putative pilus assembly protein [Rhizobium etli GR56]
          Length = 186

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 93/178 (52%), Positives = 123/178 (69%), Gaps = 4/178 (2%)

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           + + S G  +V   +YG+ L F P VLS GRI L I+T VSEPV G       +Y+ R A
Sbjct: 13  STTDSDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNA---TYQRRSA 69

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T+VELPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR   F R+ETE+ I ATP
Sbjct: 70  ETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATP 129

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +LV+PVA   L+RPDD++S E+D   FF NRVNK+YG +EA   + Q + G+IGFIYK
Sbjct: 130 YLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGFIYK 186


>gi|227114133|ref|ZP_03827789.1| general secretion pathway protein D [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 684

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 128/349 (36%), Gaps = 45/349 (12%)

Query: 146 VLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYAN----------SSSKKVMNLLNIAGED 194
           VL G+  +IQ D Q A+      +S     Q  +             ++V+  L+I    
Sbjct: 310 VLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP- 368

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKF 238
           QV ++  IAEV+      +G Q +   +      +                     G   
Sbjct: 369 QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAA 428

Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
            +  G F+ +     + ++  +L AL + +    LA P++  +    A+F  G +     
Sbjct: 429 TTALGGFNGIAAGFYQGNWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLA 488

Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPS 350
             +T S      +V     G+ L   P +     + L I+ EVS      +        +
Sbjct: 489 GSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGAT 548

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+V+ GLL     +    +PLL  IP+LG LFR++    ++  +
Sbjct: 549 FNTRTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNL 608

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
            +   P +++  +          Y     +K   FN   +       SE
Sbjct: 609 MLFIRPSIIRDRSQ---------YQSASASKYHSFNAEEEKQRDVNGSE 648


>gi|114321548|ref|YP_743231.1| general secretion pathway protein D [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227942|gb|ABI57741.1| general secretion pathway protein D [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 673

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 117/291 (40%), Gaps = 28/291 (9%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------- 225
           S + V+N L+I    QV ++  IAEV +D ++++G Q  +     G              
Sbjct: 328 SLRSVLNRLDIR-RAQVLVEAVIAEVSQDRVEELGVQWGVLSEDRGVGLINFGGAAGAGG 386

Query: 226 ---------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                     + S  +      V +G    V  +        ++ AL   +A   L+ P+
Sbjct: 387 GIADVIRAAGAISDGSTADLPQVGDGAAIGVGDLRGSTQVAALIRALSGDSASNILSTPS 446

Query: 277 LTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           L  +  + A    G    + T      S    +S+   D GV L   P +     + L I
Sbjct: 447 LMTMDNEEAEIVVGQNVPFITGRAIEDSGQAFSSIQRQDVGVQLRIRPQINEGDTLKLEI 506

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + EVS    G+         +R   T+V + +G  +VL GL+ D ++   + +PLL  +P
Sbjct: 507 EQEVSSVSGGIQGAADLVTDLRSVRTSVMVENGQMVVLGGLIDDQLRTRSQAVPLLGNLP 566

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            LG LFR  R   E+  + +   P +++  A ++ +  + +  +    + F
Sbjct: 567 GLGRLFRYDRSQVEKRNLMVFLRPVIIRDTAAQERATAEPYNRMRAMQQRF 617


>gi|308048042|ref|YP_003911608.1| type IV pilus secretin PilQ [Ferrimonas balearica DSM 9799]
 gi|307630232|gb|ADN74534.1| type IV pilus secretin PilQ [Ferrimonas balearica DSM 9799]
          Length = 681

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 24/259 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----------------- 225
           +++++L++    QV ++  +  VR +I +++G +  I+                      
Sbjct: 421 RLVDILDVP-VKQVVIESRMVTVRDNINEELGIRWGISDQQGDKGTAGTLPGAEDIANGI 479

Query: 226 -PSKSFAADFGGKFVSEGGD--FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            PS S   +     V   G   F V  + D    +  L ALER      +A P LT  + 
Sbjct: 480 VPSLSDRLNVNLPVVEPAGSIAFHVAKLGDGTLLDLELSALERENKGEIIASPRLTTANQ 539

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
            +A    G +  +   S+S+GATSV      + L  TP +    RI L +          
Sbjct: 540 YTAFIEQGTEIPF-VQSTSSGATSVEFKKAVLGLTVTPQITPDNRIVLDLTVTQDTRGET 598

Query: 343 VNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           V     P+     ++  T V   +G TIVL G+ +         +PLL  IP +G LFRN
Sbjct: 599 VQTATGPAVAIDTQRISTQVLAQNGETIVLGGIFQQQQLNTVTKVPLLGDIPFVGVLFRN 658

Query: 401 SRFNREETEIFIAATPFLV 419
           S+   E+ E+ I  TP +V
Sbjct: 659 SQDFTEKKELLIFVTPKIV 677


>gi|126454161|ref|YP_001064292.1| general secretion pathway protein D [Burkholderia pseudomallei
           1106a]
 gi|134281369|ref|ZP_01768077.1| general secretion pathway protein D [Burkholderia pseudomallei 305]
 gi|217423996|ref|ZP_03455496.1| general secretion pathway protein D [Burkholderia pseudomallei 576]
 gi|226193043|ref|ZP_03788653.1| general secretion pathway protein D [Burkholderia pseudomallei
           Pakistan 9]
 gi|237814399|ref|YP_002898850.1| general secretion pathway protein D [Burkholderia pseudomallei
           MSHR346]
 gi|254258553|ref|ZP_04949607.1| general secretion pathway protein D [Burkholderia pseudomallei
           1710a]
 gi|126227803|gb|ABN91343.1| general secretion pathway protein D [Burkholderia pseudomallei
           1106a]
 gi|134247036|gb|EBA47122.1| general secretion pathway protein D [Burkholderia pseudomallei 305]
 gi|163639391|gb|ABY28246.1| general secretion pathway protein D [Burkholderia pseudomallei]
 gi|217393059|gb|EEC33081.1| general secretion pathway protein D [Burkholderia pseudomallei 576]
 gi|225934643|gb|EEH30620.1| general secretion pathway protein D [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506672|gb|ACQ98990.1| general secretion pathway protein D [Burkholderia pseudomallei
           MSHR346]
 gi|254217242|gb|EET06626.1| general secretion pathway protein D [Burkholderia pseudomallei
           1710a]
          Length = 757

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 52/312 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230
           + V++ L+ A   QV ++  + E++      +G Q  +  +            +G   S 
Sbjct: 394 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 452

Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277
                G   + GG     G +                    +L     ++    L+ P L
Sbjct: 453 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 512

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
             +  + A    G      T S S   +  T          D G+ LH  P +   G + 
Sbjct: 513 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 572

Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ Q     +
Sbjct: 573 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 632

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           PLL  IP +G LFR+    R++T + +   P ++                  + A+A   
Sbjct: 633 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 677

Query: 446 NRVNKIYGPKEA 457
           NR + I G   A
Sbjct: 678 NRYDYIQGVTGA 689


>gi|254228550|ref|ZP_04921975.1| general secretion pathway protein D [Vibrio sp. Ex25]
 gi|262392666|ref|YP_003284520.1| general secretion pathway protein D/type II secretion outermembrane
           pore forming protein (PulD) [Vibrio sp. Ex25]
 gi|151938932|gb|EDN57765.1| general secretion pathway protein D [Vibrio sp. Ex25]
 gi|262336260|gb|ACY50055.1| general secretion pathway protein D/type II secretion outermembrane
           pore forming protein (PulD) [Vibrio sp. Ex25]
          Length = 672

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 121/337 (35%), Gaps = 57/337 (16%)

Query: 146 VLHGMVRTIQDSQRAVELSET-------FLSQSGRNQYANSSSKKVMNLLNIAGED---- 194
           VL G+   +Q  ++  + +           + +  N    ++   +MN L          
Sbjct: 281 VLKGVSDNLQAEKQVGQKASGAQRGEVVIAAHAATNALVLTAPPDIMNALQDVIAQLDIR 340

Query: 195 --QVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSF-------------- 230
             QV ++  I E+       +G Q            G+S  P                  
Sbjct: 341 RAQVLIEALIVEMSEGDGINLGVQWGSLETGAVIQYGNSGAPIGQVMVGLEEAKDQTRTE 400

Query: 231 ----------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                           + D+     +  G       +    +  ++ A+   +    L+ 
Sbjct: 401 YYTNANGERTPYDVTESGDYSTLASALSGVNGAAMSIVMGDWTALVSAVATDSNSNILSS 460

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIG 329
           P++T +    ASF  G +    T S++         +V   + G+ L   P +     + 
Sbjct: 461 PSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQ 520

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + +  +PLL 
Sbjct: 521 LNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLG 579

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            IP+LG LF+++    E+  + +   P +++     D
Sbjct: 580 DIPVLGHLFKSTSTQTEKRNLMVFIKPTIIRDGMTAD 616


>gi|92112745|ref|YP_572673.1| type II and III secretion system protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91795835|gb|ABE57974.1| type II and III secretion system protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 668

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 143/359 (39%), Gaps = 43/359 (11%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------------IRVEMVSDT-- 144
           +IL  H      N D+++   +  L    R+ + +              ++V     T  
Sbjct: 308 LILQSHGLASRRNGDVIVVAPVDELAQMERQTLENRAQSEQLAPLVTDYVQVRYAKATDL 367

Query: 145 -VVLHGM----VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
             +L G     + + +      E + T L +  R Q A  S + ++  L++    QV ++
Sbjct: 368 AAMLRGSEGFGLLSERGRVTVDERTNTLLVRDTREQLA--SIRGMLERLDVP-VRQVQIE 424

Query: 200 VTIAEVRRDILKQIGFQHSITGSSS--------------GPSKSFAADFG-----GKFVS 240
             I   R    +++G    I+                   PS +     G     G    
Sbjct: 425 ARIVIARDTASRELGVNWGISQRQGVTFDDDGVGSVVDRNPSGANRGSAGLSVDLGDSDG 484

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            G  FS   +      +  L ALE     +T+++P +   + ++A    G +  Y+  S+
Sbjct: 485 SGSTFSFGYLSGDVLLDLELRALESEGKSQTISQPKVITANQKTAVIKQGQEIPYQE-ST 543

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           S+GAT+V   +  + L  TP +   G I + +    ++ V   +    P+      +T V
Sbjct: 544 SSGATNVEFKEAVLSLEATPQITPDGSIVMDLLIN-NDTVADNSYDGAPAIDTNSIETQV 602

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +  G T+VL G+L  +  +     P L  +P++G+LFR ++ + E+ E+ I  TP ++
Sbjct: 603 LVDDGATVVLGGILTSEQLRNLYKTPFLGDLPLIGSLFRYTQESNEKVELLIFITPTII 661


>gi|89075207|ref|ZP_01161638.1| putative fimbrial assembly protein [Photobacterium sp. SKA34]
 gi|89049029|gb|EAR54596.1| putative fimbrial assembly protein [Photobacterium sp. SKA34]
          Length = 568

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 103/265 (38%), Gaps = 29/265 (10%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S K +++ L+I    QV ++  I  +    + ++G +  +  S      +      G   
Sbjct: 306 SIKDIVSSLDIP-VKQVQIEARIVTINEGDIDELGVRWGV--SKVNGDTTVGGSIEGNLA 362

Query: 240 SEGGDFSVKGV-----------------------LDRFSFETVLHALERATAIRTLAEPT 276
           S G       V                       L     +  L AL+       ++ P 
Sbjct: 363 SSGLLGENASVDDFLNVNLGAGAGAASIAFQVAKLGNILLDLELSALQTENKAEIISSPR 422

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L   + ++A    G +  Y   SSS GATSV+     + L  TP +    ++ L ++   
Sbjct: 423 LMTTNKKTAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVTPQITPDDKLVLDLEVTQ 481

Query: 337 SEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                 +    G   S   ++  T V + +G T+VL G+ +  +  +   +PLL  IPIL
Sbjct: 482 DNKGEDVPTGTGTAISIDTQRIGTQVLVNNGETVVLGGIYQHSMTHVTRKVPLLGDIPIL 541

Query: 395 GALFRNSRFNREETEIFIAATPFLV 419
           GALFR+      + E+ I  TP +V
Sbjct: 542 GALFRHKMEQMGKRELLIFVTPKIV 566


>gi|157377398|ref|YP_001475998.1| type IV pilus secretin PilQ [Shewanella sediminis HAW-EB3]
 gi|157319772|gb|ABV38870.1| type IV pilus secretin PilQ [Shewanella sediminis HAW-EB3]
          Length = 682

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 103/259 (39%), Gaps = 24/259 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229
           +++ +L+I    QV ++  +  V+ D+ +++G +  +T        S             
Sbjct: 422 RLIEVLDIPI-RQVLIESRMVTVKDDVSEELGIRWGVTDQQGDKGTSGSLEGAESISNGI 480

Query: 230 -------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                     +      +    F V  + D    +  L ALE+      +A P +   + 
Sbjct: 481 VPALVDRLNVNLPASTGAARVAFHVAKLADGTVLDMELSALEKEDKGEIIASPRIMTSNQ 540

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
           ++A    G +  Y   SSS GA +++     + L  TP +    R+ L ++        V
Sbjct: 541 KAAYIEQGVEIPYLEASSS-GAATISFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKV 599

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G   S   ++  T V +  G TIVL G+ +  +      +P+L  IP +G LFR+
Sbjct: 600 VATPLGSAVSIDTQRIGTQVLVDHGETIVLGGIYQQQLINRVSKVPVLGDIPFVGFLFRS 659

Query: 401 SRFNREETEIFIAATPFLV 419
           +       E+ I  TP ++
Sbjct: 660 TTDENNRQELLIFVTPKII 678


>gi|53717646|ref|YP_106632.1| general secretory pathway protein D [Burkholderia pseudomallei
           K96243]
 gi|52208060|emb|CAH33990.1| general secretory pathway protein D [Burkholderia pseudomallei
           K96243]
          Length = 757

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 52/312 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230
           + V++ L+ A   QV ++  + E++      +G Q  +  +            +G   S 
Sbjct: 394 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 452

Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277
                G   + GG     G +                    +L     ++    L+ P L
Sbjct: 453 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 512

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
             +  + A    G      T S S   +  T          D G+ LH  P +   G + 
Sbjct: 513 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 572

Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ Q     +
Sbjct: 573 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 632

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           PLL  IP +G LFR+    R++T + +   P ++                  + A+A   
Sbjct: 633 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 677

Query: 446 NRVNKIYGPKEA 457
           NR + I G   A
Sbjct: 678 NRYDYIQGVTGA 689


>gi|226193920|ref|ZP_03789521.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|225933865|gb|EEH29851.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9]
          Length = 566

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 71/282 (25%), Positives = 136/282 (48%), Gaps = 11/282 (3%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ 
Sbjct: 95  EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G  G   + +D+ +  D   L+ +LR+ +  + +IRV   +DT+VL G V + Q +Q+AV
Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213

Query: 162 ELSETFLSQSG--RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++ + +++          +   V+N+L +    QV L+V +AEV + ++ Q+      
Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +  G   S+        ++  G        ++      + A      ++ LAEP L  
Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329

Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHF 318
           ISGQ A+F +GG+       SS   T   ++   ++GV    
Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGAEV 371


>gi|187930465|ref|YP_001900952.1| general secretion pathway protein D [Ralstonia pickettii 12J]
 gi|187727355|gb|ACD28520.1| general secretion pathway protein D [Ralstonia pickettii 12J]
          Length = 807

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 121/305 (39%), Gaps = 44/305 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---- 237
           + V++ L+ A   QV ++  I EV      Q+G Q                +FG      
Sbjct: 422 RAVIDDLD-ARRAQVYIESMIVEVTATKASQLGIQWMAGAGGPTTFFGGGTNFGSGANNL 480

Query: 238 --------FVSEGGDFSVK------------GVLDRFSF---------ETVLHALERATA 268
                    ++ GG  S              G L+  +F           +L AL    +
Sbjct: 481 INLAGTIATITSGGIGSTAAQTAIGTLSNSVGQLNGGNFGVFNRGSGLGAILSALGSDGS 540

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVT------THDYGVVLHFTP 320
           +  L+ P L  +  + A    G      T S   + GA SVT        D G+ L   P
Sbjct: 541 VNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKP 600

Query: 321 TVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
            +   G + ++I  E S  V G  NA   P+  VR  +T V    G  +VL GLL+D+ Q
Sbjct: 601 QITDGGLVKMQIFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQ 660

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
             ++ +P L  IPILGALFR+    R +T + +   P +++  A    +  D+ Y+   D
Sbjct: 661 DGEQKVPGLGDIPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGTLSDNRYNYMRD 719

Query: 440 AKAFF 444
            +  F
Sbjct: 720 TQQGF 724


>gi|15595882|ref|NP_249376.1| type II secretion system protein [Pseudomonas aeruginosa PAO1]
 gi|218893357|ref|YP_002442226.1| putative type II secretion system protein [Pseudomonas aeruginosa
           LESB58]
 gi|9946565|gb|AAG04074.1|AE004503_12 probable type II secretion system protein [Pseudomonas aeruginosa
           PAO1]
 gi|218773585|emb|CAW29399.1| probable type II secretion system protein [Pseudomonas aeruginosa
           LESB58]
          Length = 803

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 29/328 (8%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++LL+     QV ++  I EV  D   + G Q  
Sbjct: 449 QADATTNTLLISAPEPLYRN--LREVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQ 505

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
                                + G                 G   + G+      + +  
Sbjct: 506 AGNLGGNGVFGGVNFGQSALNTAGKNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLAR 565

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
           AL+       L+ P L  +  +SAS   G    + +         +S+    ++   D G
Sbjct: 566 ALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVG 625

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L +  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 626 LKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGL 685

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L+D++Q   +G+P LS +P +G+LFR  + +R +T + +   P++V+  A    S   + 
Sbjct: 686 LQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMVFLRPYIVRDAAAG-RSITLNR 744

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           Y     A+     R +   G  +A  + 
Sbjct: 745 YDFIRRAQQRVQPRHDWSVGDMQAPVLP 772


>gi|167736415|ref|ZP_02409189.1| general secretion pathway protein D [Burkholderia pseudomallei 14]
 gi|167813490|ref|ZP_02445170.1| general secretion pathway protein D [Burkholderia pseudomallei 91]
 gi|167892116|ref|ZP_02479518.1| general secretion pathway protein D [Burkholderia pseudomallei
           7894]
          Length = 742

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 52/312 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230
           + V++ L+ A   QV ++  + E++      +G Q  +  +            +G   S 
Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 445

Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277
                G   + GG     G +                    +L     ++    L+ P L
Sbjct: 446 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 505

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
             +  + A    G      T S S   +  T          D G+ LH  P +   G + 
Sbjct: 506 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 565

Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ Q     +
Sbjct: 566 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 625

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           PLL  IP +G LFR+    R++T + +   P ++                  + A+A   
Sbjct: 626 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 670

Query: 446 NRVNKIYGPKEA 457
           NR + I G   A
Sbjct: 671 NRYDYIQGVTGA 682


>gi|54307500|ref|YP_128520.1| putative fimbrial assembly protein [Photobacterium profundum SS9]
 gi|46911920|emb|CAG18718.1| putative fimbrial assembly protein [Photobacterium profundum SS9]
          Length = 567

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 103/264 (39%), Gaps = 26/264 (9%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---------- 229
           S K +++ L+I    QV ++  I  +    + ++G +  ++  +   +            
Sbjct: 304 SIKDIISALDIP-VKQVQIEARIVTINEGDVDELGVRWGVSKHNGNFTLGGSIESNLGAV 362

Query: 230 ------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                          +   +             +     +  L AL+  +    ++ P L
Sbjct: 363 GLLKDDVSVDDFLNVNLAAQKAGASSIAFQVAKIGDILLDLELSALQSESKAEIISSPRL 422

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q+A    G +  Y   SSS GA SV      + L  TP +    ++ L +     
Sbjct: 423 VTTNKQTAYIEQGTEIPYLEASSS-GAVSVAFKKAVLSLMVTPQITPDNKLVLDLVVTQD 481

Query: 338 EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           EP   V  G  +  S   ++  T V + +G TIVL G+ +  + +    +PLL  +P LG
Sbjct: 482 EPGKTVVTGIGEAVSINTQRIGTQVLVENGETIVLGGIYQHQVNKSVTKVPLLGDLPYLG 541

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR+S     + E+ I  TP +V
Sbjct: 542 ALFRHSLEEMGKRELLIFITPKIV 565


>gi|76811977|ref|YP_331636.1| general secretion pathway protein D [Burkholderia pseudomallei
           1710b]
 gi|167822031|ref|ZP_02453502.1| general secretion pathway protein D [Burkholderia pseudomallei 9]
 gi|167900627|ref|ZP_02487832.1| general secretion pathway protein D [Burkholderia pseudomallei NCTC
           13177]
 gi|167921121|ref|ZP_02508212.1| general secretion pathway protein D [Burkholderia pseudomallei
           BCC215]
 gi|254194560|ref|ZP_04900991.1| general secretion pathway protein D [Burkholderia pseudomallei S13]
 gi|76581430|gb|ABA50905.1| general secretion pathway protein D [Burkholderia pseudomallei
           1710b]
 gi|169651310|gb|EDS84003.1| general secretion pathway protein D [Burkholderia pseudomallei S13]
          Length = 750

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 52/312 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230
           + V++ L+ A   QV ++  + E++      +G Q  +  +            +G   S 
Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 445

Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277
                G   + GG     G +                    +L     ++    L+ P L
Sbjct: 446 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 505

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
             +  + A    G      T S S   +  T          D G+ LH  P +   G + 
Sbjct: 506 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 565

Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ Q     +
Sbjct: 566 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 625

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           PLL  IP +G LFR+    R++T + +   P ++                  + A+A   
Sbjct: 626 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 670

Query: 446 NRVNKIYGPKEA 457
           NR + I G   A
Sbjct: 671 NRYDYIQGVTGA 682


>gi|206577210|ref|YP_002240367.1| pullulanase secretion envelope protein PulD [Klebsiella pneumoniae
           342]
 gi|206566268|gb|ACI08044.1| pullulanase secretion envelope protein PulD [Klebsiella pneumoniae
           342]
          Length = 648

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 134/353 (37%), Gaps = 49/353 (13%)

Query: 146 VLHGMVRTIQDSQR------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----- 194
           VL G+  ++Q+ ++      A++ +    +    N    +++  VMN L           
Sbjct: 273 VLTGISSSLQNDKQSAKPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 332

Query: 195 -QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--------- 244
            QV ++  IAEV+      +G Q +    ++G ++   +      V  G +         
Sbjct: 333 PQVLVEAIIAEVQDADGLNLGIQWA--NKNAGMTQFTNSGLPISTVIAGANQYNKDGTVS 390

Query: 245 ----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                       +     + ++  +L AL  +T    LA P++  +    A+F  G +  
Sbjct: 391 SSLASALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVP 450

Query: 295 YKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-- 348
             T S +T       +V     G+ L   P +     + L I+ EVS      ++     
Sbjct: 451 VLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDL 510

Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             ++  R  +  V + SG T+V+ GLL   +    + +PLL  IP++GALFR+      +
Sbjct: 511 GATFNTRTVNNAVLVGSGETVVVGGLLDKSVTDTADKVPLLGDIPVIGALFRSESKKVSK 570

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
             + +   P +++           D Y      +   F+        K++SE 
Sbjct: 571 RNLMLFIRPTIIRD---------RDEYRQASSGQYTAFDNAQTKQRGKDSSEA 614


>gi|332995712|gb|AEF05767.1| general secretion pathway protein D [Alteromonas sp. SN2]
          Length = 680

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 119/322 (36%), Gaps = 50/322 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQS---GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
            G   +   S R V +     S +           S ++V+  L+I    QV ++  I E
Sbjct: 299 SGSTNSRGSSNRDVSIDAHEDSNALVITAEPDMMRSLEEVVRQLDIR-RAQVQVEAIIVE 357

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------------------ 240
           V       +G Q            +     G   V+                        
Sbjct: 358 VFEGDGTTLGVQWVSENGGGTQFSNGVIPVGSLAVALKEAEDDTDTEAYVTDEGAVVRVT 417

Query: 241 --------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                            +  + G++D   +  V+ A+   T    LA P LT +  + A 
Sbjct: 418 TTDEGDYTSLASLLGSANGLIAGIIDN-GWGAVVQAVSTDTNSNVLATPHLTTMDNEEAY 476

Query: 287 FTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           F  G +    T +S+         +V   + G+ L  TP +     + L I+ EVS    
Sbjct: 477 FIVGQEVPIITGTSTGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQLLIEQEVSSVSG 536

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             +     S   R+  TTV +  GGTIVL GL+ +D+Q+    +PLL  IPI+G LF+++
Sbjct: 537 ATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGDIPIIGNLFKST 594

Query: 402 RFNREETEIFIAATPFLVKPVA 423
             ++ +  + +   P +V+  A
Sbjct: 595 STSKRKRNLMVFLKPTIVRDGA 616


>gi|149378291|ref|ZP_01896001.1| Type II secretory pathway, component PulD [Marinobacter algicola
           DG893]
 gi|149357425|gb|EDM45937.1| Type II secretory pathway, component PulD [Marinobacter algicola
           DG893]
          Length = 650

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 110/267 (41%), Gaps = 27/267 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--- 235
             ++ ++  L++    QV ++  I E+  ++ + +G Q ++   S   +     +F    
Sbjct: 337 QEAEMIVKALDVR-RAQVMIEAAIVEISDELGQDLGVQLALGDESGESTPVAGTNFNNVG 395

Query: 236 -------GKFVSEGGDFSVKGVL---------DRFSFETVLHALERATAIRTLAEPTLTA 279
                  G  +S+       G +         +  S+  +L AL  + A   L+ P++  
Sbjct: 396 RSLGDVLGAILSDSVIAPATGGITIGAGQRNENGVSWGVLLQALSTSAAANLLSTPSIIT 455

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           +  Q +    G    ++T  S+          T++   D G+ L  TPT+ + G + L +
Sbjct: 456 LDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERRDIGLTLKVTPTISADGLVRLVV 515

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           +         V +        R+  TTV    G TIVL GL  DD+Q  K  +PLL  IP
Sbjct: 516 EQTTENIGDSVESASDIITNKREIKTTVLADDGETIVLGGLTTDDLQVNKSKVPLLGDIP 575

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
           +LG LF +    R +  + +   P ++
Sbjct: 576 VLGRLFSSESERRVKRNLLVFLRPTIM 602


>gi|77459397|ref|YP_348904.1| type II and III secretion system protein [Pseudomonas fluorescens
           Pf0-1]
 gi|77383400|gb|ABA74913.1| general secretion pathway protein D [Pseudomonas fluorescens Pf0-1]
          Length = 783

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 135/340 (39%), Gaps = 39/340 (11%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++LL+     QV ++  I EV  D   + G Q  
Sbjct: 434 QADATTNTLLISAPEPLYRN--LREVIDLLDQR-RAQVVIESLIVEVGEDDASEFGVQWQ 490

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFS------------------VKGVLDRFSFETVL 260
            TG+  G      A+ GG  ++  G  S                  + G+      + + 
Sbjct: 491 -TGNLGGKGVIGGANLGGSGINVNGKTSLDVLPQGLNLGYVNGTVDIPGIGKILDLKVLA 549

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDY 312
            AL+       L+ P L  +  ++AS   G    + + S  TG          +VT  + 
Sbjct: 550 RALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEV 609

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIV 369
           G+ L+  P +   G + L I  EVS      +A    +      R  DT++ L  G  +V
Sbjct: 610 GLKLNVRPQISEGGTVKLDIYQEVSSIDERASAAANSAGIVTSKRALDTSILLDDGQIMV 669

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLS 428
           L GLL+D   Q  + +P LS IP +GALFRN R +  +T + +   P++++  A  R ++
Sbjct: 670 LGGLLQDGYSQSNDAVPWLSNIPGIGALFRNERRSITKTNLMVFLRPYIIRDSAAGRSIT 729

Query: 429 RPDDHYSVEDDA-----KAFFFNRVNKIYGPKEASEVEGQ 463
                +           +++    +     P  A  V   
Sbjct: 730 LNRYDFMRRAQGGLQPERSWAMPDMQAPQLPATAQGVPAP 769


>gi|4139236|gb|AAD05173.1| general secretory pathway protein D [Burkholderia pseudomallei
           1026b]
          Length = 750

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 52/312 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230
           + V++ L+ A   QV ++  + E++      +G Q  +  +            +G   S 
Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 445

Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277
                G   + GG     G +                    +L     ++    L+ P L
Sbjct: 446 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 505

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
             +  + A    G      T S S   +  T          D G+ LH  P +   G + 
Sbjct: 506 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 565

Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ Q     +
Sbjct: 566 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 625

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           PLL  IP +G LFR+    R++T + +   P ++                  + A+A   
Sbjct: 626 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 670

Query: 446 NRVNKIYGPKEA 457
           NR + I G   A
Sbjct: 671 NRYDYIQGVTGA 682


>gi|167843644|ref|ZP_02469152.1| general secretion pathway protein D [Burkholderia pseudomallei
           B7210]
          Length = 743

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 52/312 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230
           + V++ L+ A   QV ++  + E++      +G Q  +  +            +G   S 
Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 445

Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277
                G   + GG     G +                    +L     ++    L+ P L
Sbjct: 446 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 505

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
             +  + A    G      T S S   +  T          D G+ LH  P +   G + 
Sbjct: 506 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 565

Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ Q     +
Sbjct: 566 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 625

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           PLL  IP +G LFR+    R++T + +   P ++                  + A+A   
Sbjct: 626 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 670

Query: 446 NRVNKIYGPKEA 457
           NR + I G   A
Sbjct: 671 NRYDYIQGVTGA 682


>gi|149909433|ref|ZP_01898088.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Moritella sp. PE36]
 gi|149807543|gb|EDM67492.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Moritella sp. PE36]
          Length = 747

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 114/267 (42%), Gaps = 28/267 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------- 224
           +S K+++ +L++    QV ++  +  V  +I  ++G +  ++GS+               
Sbjct: 479 ASVKRIIEVLDVP-VRQVIIEARMVSVVDNISDELGIRWGLSGSTDIGSGFGLSSGSIEG 537

Query: 225 ----------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                             +      +    F + G+ +    +  L ALE       +A 
Sbjct: 538 NDSLAGGSVPAIGDRLNVNLPVASPAGSIAFQIAGLANGQILDLELSALEAEQKAEVIAS 597

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--I 332
           P +T    +SA    G +  Y   SSS+GAT++      + L  TP +    +I L   I
Sbjct: 598 PRITTTDKKSAYIEQGTEIPYVE-SSSSGATTIAFKKAVLGLWVTPHITPDNKIILDLKI 656

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             +     +    G+  S   +   T V + +G TIVL G+ K +I+Q+   +P+L  IP
Sbjct: 657 NQDTRGEDVKTVGGEAVSIDTQVISTQVLVENGETIVLGGIFKHEIKQIVTKVPILGDIP 716

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
            LG LFR+++   ++ E+ I  TP +V
Sbjct: 717 WLGVLFRSTKNISQKRELLIFVTPKVV 743


>gi|163857177|ref|YP_001631475.1| general secretion pathway protein D [Bordetella petrii DSM 12804]
 gi|163260905|emb|CAP43207.1| general secretion pathway protein D [Bordetella petrii]
          Length = 862

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 76/351 (21%), Positives = 131/351 (37%), Gaps = 51/351 (14%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           +   D V   G   T+Q       L  +        +    S ++V++ L+     QV +
Sbjct: 370 DGAGDAVSYSGGGATVQADPSTNTLIIS------APEPLYRSLREVIDQLDQR-RAQVLV 422

Query: 199 KVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFS----------- 246
           +  I EV ++   + G Q  +  GS  G       + GG  +   G  +           
Sbjct: 423 ESLIVEVSQEKAAEFGIQWMTGAGSLDGSGFIGGTNLGGSGIGSAGTGATTLDALGRGLT 482

Query: 247 ---VKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              VKG +D       +   +  AL+ +     L+ P L  +  + AS   G    + T 
Sbjct: 483 LGLVKGTVDVLGNQVINLNVLARALQNSGEANILSTPNLLTLDNEPASILVGKTVPFVTG 542

Query: 299 S--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMP 349
                    S+    ++   D G+ L+  P +   G + L I  EVS      ++     
Sbjct: 543 QYVTSGSAGSNNPFQTIEREDIGLKLNIRPQISEGGAVKLDIYQEVSSIDEASSSETTGL 602

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R  DT+V +  G  IVL GLL+D +      +P LS IP+LGALFR  +  R ++ 
Sbjct: 603 VTNKRAIDTSVLVDDGQIIVLGGLLEDRVTSTTSAVPGLSSIPLLGALFRYDKRQRTKSN 662

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
           + +   PF+V+                  D+     NR + +   +  ++ 
Sbjct: 663 LMVFLRPFVVRD---------------ARDSANVTLNRYDYMRRAQSQAQP 698


>gi|119475138|ref|ZP_01615491.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2143]
 gi|119451341|gb|EAW32574.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2143]
          Length = 733

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 114/284 (40%), Gaps = 43/284 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSF- 230
           ++V+ LL++    QV ++  I        +++G +    G +           G ++S  
Sbjct: 451 RRVIRLLDVP-VRQVLVEARIVIANSSFDEELGVKWGAAGVNQINGDNQLFFGGNTESIE 509

Query: 231 ---------------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
                                      A +      +  G  +V  V      +  L+AL
Sbjct: 510 ASRNSVADAMINIAQGNAITEAILAPDALNVDLGVANPTGSVAVGFVSSDVILQMELNAL 569

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E       +++P +     Q A   SG +  Y+  SS+ G T+++  +  + L  TP++ 
Sbjct: 570 ESQGRGEIVSQPKVITGDKQEAIIKSGSEVPYQE-SSANGETTISFKEAVLKLQVTPSIT 628

Query: 324 SPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
              RI ++++         V   N G +P+    +  T V + +G T+VL G+ +    +
Sbjct: 629 PDDRIIMKLEINQDSIGTLVPSGNGGVVPTIDTTELTTQVLVGNGETVVLGGVFRTVDVE 688

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
            +  +P+L  IP LG LF N+   +E+TE  I  TP ++    +
Sbjct: 689 SESKVPVLGDIPYLGRLFTNTTVTQEKTETLIFITPRILADTLI 732


>gi|83647301|ref|YP_435736.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC
           2396]
 gi|83635344|gb|ABC31311.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC
           2396]
          Length = 647

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 109/264 (41%), Gaps = 26/264 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236
           + ++  L++    QV ++  I E+   + +Q+G Q +    +     +   +F       
Sbjct: 333 EAIVQQLDVR-RAQVLIEAAIVEISDGLSRQLGVQMAAGDLTGKSGPATVTNFTNVGISA 391

Query: 237 ----------KFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                        S GGD +   +     R  +  ++ AL  +     L+ P++  +   
Sbjct: 392 SAILAAIASNSTPSIGGDIAAVAIGEAEGRKGWGALIQALGTSGQANLLSTPSIITMDNL 451

Query: 284 SASFTSGGQHLY-------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            +    G    +        T  +S   T++   D G+ L  TP++     + L I+ E 
Sbjct: 452 QSEIIVGQNVPFRTGQTGTGTDGTSNPFTTIERQDVGLTLRVTPSISDGDLVRLEIEQES 511

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           S       +        R+  T+V   +  TIVL GL+ ++ +  +  +PLL  IP+LGA
Sbjct: 512 SSIAPSNESASDIITNKRQIKTSVLADNAETIVLGGLMSENYKLSEAKVPLLGDIPLLGA 571

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           LFR+++  +++  + +   P +++
Sbjct: 572 LFRSTKREKDKQNLLVFLRPTILR 595


>gi|110833080|ref|YP_691939.1| type II secretion system protein [Alcanivorax borkumensis SK2]
 gi|110646191|emb|CAL15667.1| type II secretion system protein, probable [Alcanivorax borkumensis
           SK2]
          Length = 406

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 81/251 (32%), Positives = 122/251 (48%), Gaps = 11/251 (4%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV   + I EV R  L   GF++S            A+  GG        F +       
Sbjct: 141 QVQTDIRIMEVSRSKLNSFGFEYSNIFDGGNTQVGVASPGGGGPSDSFNLFRLG-----K 195

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +  T+++ALE      TLA+P+LTA+SGQ+A+F SGG+    T S + G   V    +G+
Sbjct: 196 NSTTIINALESGGFAYTLAKPSLTALSGQTATFLSGGEFPVPTRSDNNG-VQVEFKSFGI 254

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVL 370
            L  TPTV+S  +I L++  EVSE             +P  RVR+++TTV L  G T ++
Sbjct: 255 GLALTPTVISGDQIILKVAPEVSELDFSAGVESAGTSIPGLRVRRSETTVSLAPGETFII 314

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL-SR 429
           +GL+  +       IP L  +P+LGA FR+ + +RE+ E+ +  TP LV P +  +    
Sbjct: 315 SGLVSQNTVNNSNRIPGLGNLPVLGAFFRSGQLSREDKEMVMVVTPHLVSPGSSTEAGPL 374

Query: 430 PDDHYSVEDDA 440
           P   Y      
Sbjct: 375 PGAGYHNSSTG 385


>gi|167908851|ref|ZP_02495942.1| general secretion pathway protein D [Burkholderia pseudomallei 112]
          Length = 745

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 52/312 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230
           + V++ L+ A   QV ++  + E++      +G Q  +  +            +G   S 
Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 445

Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277
                G   + GG     G +                    +L     ++    L+ P L
Sbjct: 446 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 505

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
             +  + A    G      T S S   +  T          D G+ LH  P +   G + 
Sbjct: 506 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 565

Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ Q     +
Sbjct: 566 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 625

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           PLL  IP +G LFR+    R++T + +   P ++                  + A+A   
Sbjct: 626 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 670

Query: 446 NRVNKIYGPKEA 457
           NR + I G   A
Sbjct: 671 NRYDYIQGVTGA 682


>gi|77359203|ref|YP_338778.1| general secretion pathway protein D [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874114|emb|CAI85335.1| General secretion pathway protein D [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 688

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 113/286 (39%), Gaps = 47/286 (16%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------- 217
           S + V+  L+I    QV ++  I EV        G Q                       
Sbjct: 340 SLESVIERLDIR-RAQVLVEAIIIEVMEGDGINFGLQWISEQGGMLQFNNGTTVPVGALA 398

Query: 218 -------------SITGSSSGPSK----SFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
                        +I G+ SG       +   D+G      GG   +   + +  +  ++
Sbjct: 399 VAAEQARDTTVSKNIIGTESGTITQVDETTKGDYGPLASLLGGINGLAMGVIKNDWGAIV 458

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTHDYGVV 315
            A+   +    LA P++T +  + AS   G +    T S +    +     V   + G+ 
Sbjct: 459 QAVSTDSNSNILATPSITTMDNEEASILVGQEVPIITGSQTGSNNTNPFQTVERQEVGIK 518

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +     + L I+ EVS  V G  A D+ S   R   TTV    GG +VL GL+ 
Sbjct: 519 LKVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRSIKTTVMADDGGMVVLGGLID 576

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +D+Q+    +PLL  IPILG LF+++   R +  + +   P +++ 
Sbjct: 577 EDVQESVSKVPLLGDIPILGHLFKSTNTTRRKRNLIVFIRPTIIRD 622


>gi|121610459|ref|YP_998266.1| general secretion pathway protein D [Verminephrobacter eiseniae
           EF01-2]
 gi|121555099|gb|ABM59248.1| general secretion pathway protein D [Verminephrobacter eiseniae
           EF01-2]
          Length = 740

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 111/286 (38%), Gaps = 37/286 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------TGSSSG 225
           + V+  L+     QV ++  I E+  + L Q G Q                   +G S G
Sbjct: 397 RAVIEQLD-GRRAQVLVESLIVEISANKLAQFGVQWQSLLGKKGASLLGAIGTNSGQSGG 455

Query: 226 PSKSFAADFGGKFVSEGGDFS-----------VKGVLDRFSFETVLHALERATAIRTLAE 274
              S  A       +     +              +  ++    + + L+ +     L+ 
Sbjct: 456 NITSLTAALASGSTTSIATAANSLGQGMNLLLAPRINGQYYLGALANFLQNSGDANVLST 515

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPG 326
           P L  +  + A    G    + T S +  +        T+V   D G++L   P +   G
Sbjct: 516 PNLMTLDNEEAKIVIGNNVPFVTGSYANSSSNSTVNPFTTVQRQDVGLMLRVRPQINENG 575

Query: 327 RIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            + L +  EVS+       + + P+   R  ++ V +  G  IV+ GLL+D     ++ +
Sbjct: 576 TVKLSVYQEVSKIDASTLTSPNGPTTSKRSIESNVLVEDGSIIVIGGLLEDSYSLNQDKV 635

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           P+L  +P+LG LFR+ +  R +T + I   P +++  A  D+   D
Sbjct: 636 PVLGDMPVLGNLFRSEKRTRNKTNLMIFLRPTVLRSSASSDILTAD 681


>gi|315125823|ref|YP_004067826.1| general secretion pathway protein D [Pseudoalteromonas sp. SM9913]
 gi|315014337|gb|ADT67675.1| general secretion pathway protein D [Pseudoalteromonas sp. SM9913]
          Length = 688

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 113/286 (39%), Gaps = 47/286 (16%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------- 217
           S + V+  L+I    QV ++  I EV        G Q                       
Sbjct: 340 SLESVIERLDIR-RAQVLVEAIIIEVMEGDGVNFGLQWISEQGGMLQFNNGTTVPVGSLA 398

Query: 218 -------------SITGSSSGPSK----SFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
                        +I G+ SG       +   D+G      GG   +   + +  +  ++
Sbjct: 399 VAAEQARDKTVTKNIIGTESGTVTKYDETTEGDYGPLASLLGGINGLAMGVIKNDWGAIV 458

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315
            A+   T    LA P++T +  + AS   G +    T S +         +V   + G+ 
Sbjct: 459 QAVSTDTNSNILATPSITTMDNEEASILVGQEVPIITGSQTGSNNENPFQTVERQEVGIK 518

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +     + L I+ EVS  V G  A D+ S   R   TTV    GG +VL GL+ 
Sbjct: 519 LKVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRAIKTTVMADDGGMVVLGGLID 576

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +D+Q+    +PLL  IPILG LF+++   + +  + +   P +++ 
Sbjct: 577 EDVQESVSKVPLLGDIPILGHLFKSTNTTKRKRNLIVFIRPTIIRD 622


>gi|153840376|ref|ZP_01993043.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AQ3810]
 gi|149745960|gb|EDM57090.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AQ3810]
          Length = 552

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 26/317 (8%)

Query: 132 ADSNIRVEMVSDTVVLHG---------MVRTIQDSQRAVELSETFLSQSGRN-------Q 175
            +  I     ++++VL            V +  D +RA  L E  + +           Q
Sbjct: 184 GEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDIRRAQVLIEALIVEMAEGDGINLGVQ 243

Query: 176 YANSSSKKVMNLLNIAGED-QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
           + +  +  V+   N      QV +     E  +D+ K   + +S T        +   D+
Sbjct: 244 WGSLETGAVIQYGNTGAPIGQVMVG---LEEAKDVTKTESYWNSDTNKWENRQYTEEGDY 300

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                + GG       +    +  ++ A+   +    L+ P++T +    ASF  G +  
Sbjct: 301 STLASALGGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSITVMDNGEASFIVGEEVP 360

Query: 295 YKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
             T S++         +V   + G+ L   P +     + L I+ EVS  V+G N     
Sbjct: 361 VITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDV 419

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
            +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LF+++    E+  
Sbjct: 420 RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHLFKSTSTQTEKRN 479

Query: 410 IFIAATPFLVKPVAMRD 426
           + +   P +++     D
Sbjct: 480 LMVFIKPTIIRDGMTAD 496


>gi|239998226|ref|ZP_04718150.1| PilQ [Neisseria gonorrhoeae 35/02]
 gi|240112199|ref|ZP_04726689.1| PilQ [Neisseria gonorrhoeae MS11]
 gi|268594082|ref|ZP_06128249.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae 35/02]
 gi|268598258|ref|ZP_06132425.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae MS11]
 gi|268547471|gb|EEZ42889.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae 35/02]
 gi|268582389|gb|EEZ47065.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae MS11]
 gi|317163512|gb|ADV07053.1| PilQ [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 731

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 104/260 (40%), Gaps = 22/260 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------SSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 465 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523

Query: 236 GK------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   ++S G  S  T      + L  TP +   G+I + ++     P  
Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643

Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               +  +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF+ 
Sbjct: 644 CASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703

Query: 401 SRFNREETEIFIAATPFLVK 420
                +  E+ I  TP ++ 
Sbjct: 704 RGKKTDRRELLIFITPRIID 723


>gi|90580860|ref|ZP_01236662.1| putative fimbrial assembly protein [Vibrio angustum S14]
 gi|90437931|gb|EAS63120.1| putative fimbrial assembly protein [Vibrio angustum S14]
          Length = 574

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 106/265 (40%), Gaps = 29/265 (10%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S K +++ L+I    QV ++  I  +    + ++G +  +  S      +      G   
Sbjct: 312 SIKDIVSSLDIP-VKQVQIEARIVTINEGDIDELGVRWGV--SKVNGDTTVGGSIEGNLA 368

Query: 240 SEGG---DFSVKGVLD--------------------RFSFETVLHALERATAIRTLAEPT 276
           S G    D +V   L+                        +  L AL+       ++ P 
Sbjct: 369 SSGLLGEDATVDDFLNVNLGAGAGAASIAFQVAKLGNILLDLELSALQTENKAEIISSPR 428

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L   + ++A    G +  Y   SSS GATSV+     + L  TP +    ++ L ++   
Sbjct: 429 LMTTNKKTAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVTPQITPDDKLVLDLEVTQ 487

Query: 337 SEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                 +    G   S   ++  T V + +G T+VL G+ +  +  +   +PLL  IP+L
Sbjct: 488 DNKGEDVPTGTGTAISIDTQRIGTQVLVNNGETVVLGGIYQHSMTNVTRKVPLLGDIPVL 547

Query: 395 GALFRNSRFNREETEIFIAATPFLV 419
           GALFR+      + E+ I  TP +V
Sbjct: 548 GALFRHKMEQMGKRELLIFVTPKIV 572


>gi|300690208|ref|YP_003751203.1| fimbrial type-4 assembly protein [Ralstonia solanacearum PSI07]
 gi|299077268|emb|CBJ49894.1| fimbrial type-4 assembly protein [Ralstonia solanacearum PSI07]
          Length = 717

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 99/249 (39%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------------PSKSF 230
            QV ++  I E      + +G +      ++G                       P+ SF
Sbjct: 465 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPVTTNGTWDNSPALSF 524

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 525 PANGINGVSAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 584

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV      + L  TP +   G + L +  +V++  +G    +  +
Sbjct: 585 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLDV--DVNKDSVGTQTTNGFA 641

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++    + TE+
Sbjct: 642 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 701

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 702 LVFLTPRVL 710


>gi|262370143|ref|ZP_06063470.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262315182|gb|EEY96222.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 785

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 100/257 (38%), Gaps = 30/257 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------- 242
             QV ++ TI EV  +   Q+G Q ++   SSG       + G    S            
Sbjct: 382 RQQVLIEATILEVEGNDADQLGVQWAMGDLSSGVGIINFDNIGSSLKSIAANYLTGGGAG 441

Query: 243 -------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                        GD+       R  +  ++ AL+  T    L+ P++  +  + A    
Sbjct: 442 AASAIGAGGSLILGDYKEGSDGSRQLYGAMIQALKSNTKSNLLSTPSIVTMDNEEAYIVV 501

Query: 290 GGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           G    + T S ST +       T++   D GV L   P +   G I L I+ EVS+    
Sbjct: 502 GENVPFVTGSVSTTSSGTANPYTTIERKDVGVTLKVVPHIGEGGTIRLEIEQEVSDVKAN 561

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                      R   T+V    G TIVL GL+ D+    ++ IP L  IP LG LFR+  
Sbjct: 562 KGQAQDLVTSKRAIKTSVLAEHGNTIVLGGLISDNTSYSRQSIPGLGAIPGLGRLFRSDG 621

Query: 403 FNREETEIFIAATPFLV 419
            + ++  + +   P +V
Sbjct: 622 KSDQKRNLLVFIHPTIV 638


>gi|331017211|gb|EGH97267.1| general secretion pathway protein D [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 361

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 108/262 (41%), Gaps = 19/262 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             QV ++  I EV+      +G Q  +     +SG + +     G +     G  ++   
Sbjct: 87  PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 146

Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
              F      + +  L ALE     + L+ P+L  ++ Q A    G        S +T  
Sbjct: 147 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 206

Query: 305 ------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRK 355
                 +SV     GV+L   P +   G + + IQ +VS+   G  + D+   P    R 
Sbjct: 207 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 266

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V   SG T++L GL+K D  +    +P L +IP L  LF NS  +++ TE+ +  T
Sbjct: 267 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 326

Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437
           P ++   +     +  D Y  +
Sbjct: 327 PRVI--TSSSQARQVTDDYRQQ 346


>gi|240013410|ref|ZP_04720323.1| PilQ [Neisseria gonorrhoeae DGI18]
 gi|240015851|ref|ZP_04722391.1| PilQ [Neisseria gonorrhoeae FA6140]
 gi|240120480|ref|ZP_04733442.1| PilQ [Neisseria gonorrhoeae PID24-1]
          Length = 731

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 104/260 (40%), Gaps = 22/260 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------SSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 465 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523

Query: 236 GK------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   ++S G  S  T      + L  TP +   G+I + ++     P  
Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643

Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               +  +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF+ 
Sbjct: 644 CASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703

Query: 401 SRFNREETEIFIAATPFLVK 420
                +  E+ I  TP ++ 
Sbjct: 704 RGKKTDRRELLIFITPRIID 723


>gi|262170336|ref|ZP_06038014.1| type II secretory pathway component PulD [Vibrio mimicus MB-451]
 gi|261891412|gb|EEY37398.1| type II secretory pathway component PulD [Vibrio mimicus MB-451]
          Length = 675

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 134/375 (35%), Gaps = 72/375 (19%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181
           +   L+R I   ++ +    +  V++      +D    ++ +SE   ++ G  Q   S  
Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQQTTSKR 304

Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216
            +VM       N L +                      QV ++  I E+       +G Q
Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364

Query: 217 HS-------ITGSSSGPS---------------------------------KSFAADFGG 236
                    I   ++G S                                  +   D+  
Sbjct: 365 WGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKRPIRDSNTGAIKYYEETTTKGDYST 424

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              +  G       +    +  +++A+   +    L+ P++T +    ASF  G +    
Sbjct: 425 LASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGEASFIVGEEVPVI 484

Query: 297 TVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           T S++         +V   + G+ L   P +     + L I+ EVS  V+G N      +
Sbjct: 485 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRF 543

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + 
Sbjct: 544 AKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLM 603

Query: 412 IAATPFLVKPVAMRD 426
           +   P +++     D
Sbjct: 604 VFIKPTIIRDGVTAD 618


>gi|262402018|ref|ZP_06078583.1| type II secretory pathway component PulD [Vibrio sp. RC586]
 gi|262351990|gb|EEZ01121.1| type II secretory pathway component PulD [Vibrio sp. RC586]
          Length = 675

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 110/289 (38%), Gaps = 47/289 (16%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPS-------- 227
           +V+  L+I    QV ++  I E+       +G Q         I   ++G S        
Sbjct: 332 EVIGQLDIR-RAQVLIEALIVEMSEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGL 390

Query: 228 -------------------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                                     +   D+     +  G       +    +  +++A
Sbjct: 391 EEAKDTTEKKPIRNSDTGEIKYYEETTTKGDYSTLASALSGIQGAAVSIALGDWTALINA 450

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317
           +   +    L+ P++T +    ASF  G +    T S++         +V   + G+ L 
Sbjct: 451 VSNDSKSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLK 510

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ + 
Sbjct: 511 VVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLIDER 569

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
             + +  +PLL  IP+LG LFR++    E+  + +   P +++     D
Sbjct: 570 AIESESKVPLLGDIPVLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTAD 618


>gi|224368216|ref|YP_002602379.1| PilQ [Desulfobacterium autotrophicum HRM2]
 gi|223690932|gb|ACN14215.1| PilQ [Desulfobacterium autotrophicum HRM2]
          Length = 727

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 109/240 (45%), Gaps = 4/240 (1%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           +K++++ L+     Q+ +   + EV ++  K +G   S++ +++        ++      
Sbjct: 486 AKELIHRLDKVTP-QIMISARVVEVNKNFSKSLGIDWSVSKNNANSGFDVIMNYPVASDG 544

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             G    +      + +  L A E    ++ ++ P +  +  + A    G ++ Y     
Sbjct: 545 SLGFDFSRIFGTELALDATLSASEIKGDVKIISSPKILTLDNKKAKIKQGLEYAYLE-RD 603

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
            +G +SV   +  ++L  TP V    RIG+ +    ++    V+   +PS    +A+T +
Sbjct: 604 DSGGSSVLFKNIDLLLEVTPHVTPDNRIGMSVLITKNDLASVVDG--VPSLSTNEAETEL 661

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G TIV+ G++K+     + G P LS IP+LG LF +      + E+ I  TP +V+
Sbjct: 662 LVNDGNTIVIGGIVKNTSSTSETGFPGLSNIPLLGKLFGSDSTEDTKNELLIFITPTIVQ 721


>gi|288937072|ref|YP_003441131.1| general secretion pathway protein D [Klebsiella variicola At-22]
 gi|290512493|ref|ZP_06551859.1| general secretion pathway protein D [Klebsiella sp. 1_1_55]
 gi|288891781|gb|ADC60099.1| general secretion pathway protein D [Klebsiella variicola At-22]
 gi|289774834|gb|EFD82836.1| general secretion pathway protein D [Klebsiella sp. 1_1_55]
          Length = 651

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 134/353 (37%), Gaps = 49/353 (13%)

Query: 146 VLHGMVRTIQDSQR------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----- 194
           VL G+  ++Q+ ++      A++ +    +    N    +++  VMN L           
Sbjct: 276 VLTGISSSLQNDKQSAKPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 335

Query: 195 -QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--------- 244
            QV ++  IAEV+      +G Q +    ++G ++   +      V  G +         
Sbjct: 336 PQVLVEAIIAEVQDADGLNLGIQWA--NKNAGMTQFTNSGLPISTVIAGANQYNKDGTVS 393

Query: 245 ----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                       +     + ++  +L AL  +T    LA P++  +    A+F  G +  
Sbjct: 394 SSLASALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVP 453

Query: 295 YKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-- 348
             T S +T       +V     G+ L   P +     + L I+ EVS      ++     
Sbjct: 454 VLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDL 513

Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             ++  R  +  V + SG T+V+ GLL   +    + +PLL  IP++GALFR+      +
Sbjct: 514 GATFNTRTVNNAVLVGSGETVVVGGLLDKSVTDTADKVPLLGDIPVIGALFRSESKKVSK 573

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
             + +   P +++           D Y      +   F+        K++SE 
Sbjct: 574 RNLMLFIRPTIIRD---------RDEYRQASSGQYTAFDNAQTKQRGKDSSEA 617


>gi|149377297|ref|ZP_01895043.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter algicola
           DG893]
 gi|149358394|gb|EDM46870.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter algicola
           DG893]
          Length = 694

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 142/358 (39%), Gaps = 46/358 (12%)

Query: 105 DGKQMLNLDILIERDIAHLEMTL-----RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           D +Q+ N+ ++   D       L     ++    + +R++++         V  +  +  
Sbjct: 336 DKRQIGNVLLVAPADEIAAREKLELETSKQIAELAPVRLDIIQVNYAKAADVVALIQADE 395

Query: 160 AVELSETFLSQSGRNQYAN--------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            +  S  F+S   R    +           +++++  ++    QV+++  I   + ++ +
Sbjct: 396 ELISSRGFVSSDARTNTISVRETSEKLDEIRRLVSTWDVP-VRQVSIEARIVRAQTNVAE 454

Query: 212 QIGFQH--------------SITGSSSGPSKSFAADFG---------------GKFVSEG 242
            +G +               S+ GS     ++  A  G               G      
Sbjct: 455 NLGVRWGGAAYDVRGDGSVISVGGSQGAVGEARDAANGNNNTITFPGALAVDLGVTGQGA 514

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F+V    D F  +  L ALE       +++P +     Q+A   SG +  Y+  SSS 
Sbjct: 515 SSFAVGWGSDDFLVDLELSALESDGQAEVVSQPRVVTADRQTAKIKSGEEIPYQEASSS- 573

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           GATSV+  +  + L  TP +    +I + +   V++   G     +P+    +  T V +
Sbjct: 574 GATSVSFKEAALSLEVTPQITPDDKIIMDL--VVNQDSRGEVTAGIPAINTNEVTTQVLV 631

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +G T+VL G+ + ++       P L  IP LG LF+ +    E +E+ I  TP ++K
Sbjct: 632 GNGETVVLGGIFQSEVATTTTKTPFLGDIPYLGRLFKRTEHIDERSELLIFITPKIIK 689


>gi|157372484|ref|YP_001480473.1| general secretion pathway protein D [Serratia proteamaculans 568]
 gi|157324248|gb|ABV43345.1| general secretion pathway protein D [Serratia proteamaculans 568]
          Length = 660

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 139/348 (39%), Gaps = 35/348 (10%)

Query: 146 VLHGMVRTIQDSQRAV----ELSETFLSQSGRNQYA---------NSSSKKVMNLLNIAG 192
           VL G+   +QD ++ V     + +  + ++     A          S+ +KV+  L+I  
Sbjct: 301 VLSGVSANLQDEKKTVGNNVSVMKNMVIKADEQTNALIINATPDVMSNLEKVIEQLDIR- 359

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF--SVKGV 250
             QV ++  I E++      +G Q +          +  A     F     +   +  G+
Sbjct: 360 RAQVLVEAVIVEMQNADGLNLGIQWANRYGGGTQFGNAQAQIAPGFKGGMTEVFKNANGL 419

Query: 251 LDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--- 304
           +  F   ++  +L A+   +    LA P++  +  + A F+ G      T S +T +   
Sbjct: 420 VTGFYSGNWAGLLTAISNQSQNNILATPSIMTLDNEDAEFSVGQDVPILTGSQTTNSDNV 479

Query: 305 -TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTV 360
             +V     G+ L   P +     + L+I+ EVS      +        ++ +R  + TV
Sbjct: 480 FNTVARKTVGIKLKVKPQINKGQSVLLQIEQEVSSVAENSSVDKDNLGATFNIRTVNNTV 539

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + SG T+V+ GLL       K  +P L +IP+LGALFR++     +  + +   P +++
Sbjct: 540 LVESGETVVVGGLLDKSQSDSKSAVPFLERIPLLGALFRSTSHKESKRNLILFIRPTVIR 599

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
                      + Y+ E   KA  F  ++    P +       +  G+
Sbjct: 600 ---------STEEYAQESMRKAARFRSLDAQPLPLKTHAEAQLDRVGS 638


>gi|325981841|ref|YP_004294243.1| type IV pilus secretin PilQ [Nitrosomonas sp. AL212]
 gi|325531360|gb|ADZ26081.1| type IV pilus secretin PilQ [Nitrosomonas sp. AL212]
          Length = 698

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 105/271 (38%), Gaps = 32/271 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224
           +K +  L++  E QV ++  I E   +  + +G +  I  +S                  
Sbjct: 426 RKRIQKLDVF-ERQVMIEARIVEATDNFSRNLGARFGIQNASGLGDQTLGVSGNLTGSSA 484

Query: 225 ---GPSKSFAADFGGKFVSEGGDFSVKG----------VLDRFSFETVLHALERATAIRT 271
              G   S A +      +      + G          + +       L ALE     R 
Sbjct: 485 LAAGGGVSGANNLNVNLPAAAATGLLGGPAALGLSLMKINNNRLINLELSALETDQKGRV 544

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P +    G  A    G +  ++  +SS GATS+   D  + L   P +   G+I + 
Sbjct: 545 IASPRVVTAHGVEAIIEQGDRIPFQQATSS-GATSIRFMDATLRLRVKPLITYNGQIDME 603

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +          +N    P+   ++  T V + +GGT+V+ G+      ++   +P+L  I
Sbjct: 604 LNVNQDRIGAIINQFLPPAINTKQVTTKVLVENGGTVVIGGIFDRTENRVVNKVPMLGDI 663

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPV 422
           P+LG +FRN+     + E+ I  TP ++   
Sbjct: 664 PVLGHVFRNTTRVDNKRELLIFVTPRILNDS 694


>gi|194097721|ref|YP_002000762.1| PilQ [Neisseria gonorrhoeae NCCP11945]
 gi|240124975|ref|ZP_04737861.1| PilQ [Neisseria gonorrhoeae SK-92-679]
 gi|240127489|ref|ZP_04740150.1| PilQ [Neisseria gonorrhoeae SK-93-1035]
 gi|254493004|ref|ZP_05106175.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae 1291]
 gi|268683559|ref|ZP_06150421.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae SK-92-679]
 gi|268685861|ref|ZP_06152723.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae SK-93-1035]
 gi|193933011|gb|ACF28835.1| PilQ [Neisseria gonorrhoeae NCCP11945]
 gi|226512044|gb|EEH61389.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae 1291]
 gi|268623843|gb|EEZ56243.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae SK-92-679]
 gi|268626145|gb|EEZ58545.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 731

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 22/260 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------SSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 465 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523

Query: 236 GK------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   ++S G  S  T      + L  TP +   G+I + ++     P  
Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643

Query: 342 GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +  + +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF+ 
Sbjct: 644 CASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703

Query: 401 SRFNREETEIFIAATPFLVK 420
                +  E+ I  TP ++ 
Sbjct: 704 RGKKTDRRELLIFITPRIID 723


>gi|251790891|ref|YP_003005612.1| general secretion pathway protein D [Dickeya zeae Ech1591]
 gi|247539512|gb|ACT08133.1| general secretion pathway protein D [Dickeya zeae Ech1591]
          Length = 696

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 12/248 (4%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG- 242
           ++  L++  E QV ++  + EV++     +G              S     G    +   
Sbjct: 397 IIRQLDVRHE-QVLVEAIVVEVQQAEGLNLGIAWGNRNYGGSNFNSVNVGNGFNQPNPLV 455

Query: 243 ----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
               G   +       ++ T+ +ALE       LA P++  +    A F  G      T 
Sbjct: 456 NALKGTEGLVAGFYHGNWGTLFNALESNKRNNILATPSVVTLDNHRAEFNVGQDVPILTG 515

Query: 299 SSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYR 352
           S +T       +V     G+     P +   G I L I  E+S       VN+     + 
Sbjct: 516 SQTTNNDNIFNTVQRRTIGIKFSILPRINQSGTILLNISQEISSLSDTAQVNSNLGSVFN 575

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           +R  +  V++    T+V+ GLL D+ ++    +PLL  IP LG LFR +  N ++  + +
Sbjct: 576 IRTVNNVVQVQDDETVVIGGLLDDEKKETTNKVPLLGDIPWLGNLFRYTSQNNDKRNLML 635

Query: 413 AATPFLVK 420
              P +++
Sbjct: 636 FIRPRIIR 643


>gi|53723933|ref|YP_104304.1| general secretion pathway protein D [Burkholderia mallei ATCC
           23344]
 gi|121600876|ref|YP_994796.1| general secretion pathway protein D [Burkholderia mallei SAVP1]
 gi|124384347|ref|YP_001027865.1| general secretion pathway protein D [Burkholderia mallei NCTC
           10229]
 gi|126450814|ref|YP_001082187.1| general secretion pathway protein D [Burkholderia mallei NCTC
           10247]
 gi|238562298|ref|ZP_00440689.2| general secretion pathway protein D [Burkholderia mallei GB8 horse
           4]
 gi|52427356|gb|AAU47949.1| general secretion pathway protein D [Burkholderia mallei ATCC
           23344]
 gi|121229686|gb|ABM52204.1| general secretion pathway protein D [Burkholderia mallei SAVP1]
 gi|124292367|gb|ABN01636.1| general secretion pathway protein D [Burkholderia mallei NCTC
           10229]
 gi|126243684|gb|ABO06777.1| general secretion pathway protein D [Burkholderia mallei NCTC
           10247]
 gi|238522939|gb|EEP86381.1| general secretion pathway protein D [Burkholderia mallei GB8 horse
           4]
          Length = 757

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 52/312 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230
           + V++ L+     QV ++  + E++      +G Q  +  +            +G   S 
Sbjct: 394 RAVIDQLDSR-RAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 452

Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277
                G   + GG     G +                    +L     ++    L+ P L
Sbjct: 453 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 512

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
             +  + A    G      T S S   +  T          D G+ LH  P +   G + 
Sbjct: 513 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 572

Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ Q     +
Sbjct: 573 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 632

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           PLL  IP +G LFR+    R++T + +   P ++                  + A+A   
Sbjct: 633 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 677

Query: 446 NRVNKIYGPKEA 457
           NR + I G   A
Sbjct: 678 NRYDYIQGVTGA 689


>gi|255021644|ref|ZP_05293686.1| Type IV pilus biogenesis protein PilQ [Acidithiobacillus caldus
           ATCC 51756]
 gi|254968904|gb|EET26424.1| Type IV pilus biogenesis protein PilQ [Acidithiobacillus caldus
           ATCC 51756]
          Length = 772

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 114/301 (37%), Gaps = 51/301 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---F 238
           KK++  ++     QV ++  I +V  +  + +G Q   T +S+G          G     
Sbjct: 471 KKLIAKIDRPVP-QVLIEARIVQVTTNAAQSLGIQWGGTYTSNGGGGVINLSGTGASQYT 529

Query: 239 VSEGGD----------------------------------------------FSVKGVLD 252
            S+GG                                               F++     
Sbjct: 530 SSQGGSYPIGATSGASGGTSTGSGIGVPAVVNLPAYAPAGSALTGLNPASLGFALGTAAG 589

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
                  L AL+ +   + ++ P +     + A    G +  Y+  +SS GATSV+    
Sbjct: 590 NRILNLQLQALQASNQAKIISSPKVLTQDNEKAVIEQGQEIPYQQATSS-GATSVSFKKA 648

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            + L  TP +   G++ L +  + ++P              ++  T + + +G T+V+ G
Sbjct: 649 ELSLDVTPHIAPNGKVTLDVDAKNNQPNYAQTTPSGVPINTQEVKTKLLVNNGQTVVIGG 708

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           +  D       G+P+L  IP+LG LF++  +N  ++E+ +  TP +V   +  DL+  D 
Sbjct: 709 IYTDSKSHYDTGVPVLKDIPLLGWLFKSKTYNDSQSELLVFLTPKVVGGQSEDDLAGEDS 768

Query: 433 H 433
            
Sbjct: 769 G 769


>gi|186477814|ref|YP_001859284.1| general secretion pathway protein D [Burkholderia phymatum STM815]
 gi|184194273|gb|ACC72238.1| general secretion pathway protein D [Burkholderia phymatum STM815]
          Length = 787

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 70/309 (22%), Positives = 113/309 (36%), Gaps = 49/309 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+I    QV ++  I E+  +    +G Q  I   +     + A   G   ++ 
Sbjct: 404 RTVIDQLDIRRP-QVYIEALIVELNSNTNANLGIQWQIGSGNVFAGTNLATGSGNSIINL 462

Query: 242 GGDFS---------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
               +                     V  +        +L AL +      L+ P L  +
Sbjct: 463 TAAAATGGIASALATQNLQQGLNVGWVHNLFGVNGLGALLQALSQTADANVLSTPNLITL 522

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIGLRI 332
             Q A    G     +T S S   +S  T         D G+ LH  P +   G + L++
Sbjct: 523 DNQEAKIVVGTNVPIQTGSYSNLTSSTATTAFNTFDRIDVGLTLHIKPQITDGGILKLQL 582

Query: 333 QTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            TE S  V G          P +  R   +TV   +G  IVL GL++D+ Q     +PLL
Sbjct: 583 YTEDSAIVAGTTNVTTNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQVTNSKVPLL 642

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP +G LFR+    R +T + +   P ++               +    A+A   NR 
Sbjct: 643 GDIPWIGQLFRSENKTRAKTNLLVFLRPVII---------------ADRATAQAVTANRY 687

Query: 449 NKIYGPKEA 457
           + I G   A
Sbjct: 688 DYIQGVTGA 696


>gi|258620393|ref|ZP_05715431.1| general secretion pathway protein D [Vibrio mimicus VM573]
 gi|258624627|ref|ZP_05719563.1| general secretion pathway protein D [Vibrio mimicus VM603]
 gi|258583091|gb|EEW07904.1| general secretion pathway protein D [Vibrio mimicus VM603]
 gi|258587272|gb|EEW11983.1| general secretion pathway protein D [Vibrio mimicus VM573]
          Length = 675

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 134/375 (35%), Gaps = 72/375 (19%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181
           +   L+R I   ++ +    +  V++      +D    ++ +SE   ++ G  Q   S  
Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQQTTSKR 304

Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216
            +VM       N L +                      QV ++  I E+       +G Q
Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364

Query: 217 HS-------ITGSSSGPS---------------------------------KSFAADFGG 236
                    I   ++G S                                  +   D+  
Sbjct: 365 WGSLESGSVIQYGNTGASIGNVLIGIEEAKDTTEKRPIRDSNTGAIKYYEETTTKGDYST 424

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              +  G       +    +  +++A+   +    L+ P++T +    ASF  G +    
Sbjct: 425 LASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGEASFIVGEEVPVI 484

Query: 297 TVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           T S++         +V   + G+ L   P +     + L I+ EVS  V+G N      +
Sbjct: 485 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRF 543

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + 
Sbjct: 544 AKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLM 603

Query: 412 IAATPFLVKPVAMRD 426
           +   P +++     D
Sbjct: 604 VFIKPTIIRDGVTAD 618


>gi|240114943|ref|ZP_04729005.1| PilQ [Neisseria gonorrhoeae PID18]
 gi|240122781|ref|ZP_04735737.1| PilQ [Neisseria gonorrhoeae PID332]
 gi|260441241|ref|ZP_05795057.1| PilQ [Neisseria gonorrhoeae DGI2]
 gi|268600608|ref|ZP_06134775.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID18]
 gi|268681392|ref|ZP_06148254.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID332]
 gi|291044580|ref|ZP_06570289.1| type IV pilus assembly protein PilQ [Neisseria gonorrhoeae DGI2]
 gi|268584739|gb|EEZ49415.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID18]
 gi|268621676|gb|EEZ54076.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID332]
 gi|291011474|gb|EFE03470.1| type IV pilus assembly protein PilQ [Neisseria gonorrhoeae DGI2]
          Length = 731

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 22/260 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------SSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 465 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523

Query: 236 GK------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   ++S G  S  T      + L  TP +   G+I + ++     P  
Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643

Query: 342 GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +  + +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF+ 
Sbjct: 644 CASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703

Query: 401 SRFNREETEIFIAATPFLVK 420
                +  E+ I  TP ++ 
Sbjct: 704 RGKKTDRRELLIFITPRIID 723


>gi|145298152|ref|YP_001140993.1| type IV pilus biogenesis protein TapQ [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850924|gb|ABO89245.1| type IV pilus biogenesis protein TapQ [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 693

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 61/270 (22%), Positives = 109/270 (40%), Gaps = 31/270 (11%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------ 232
           S+ K ++++L+I    QV ++  +  +     + +G +  +T +    + +  +      
Sbjct: 422 SNIKPMLDILDIP-VKQVVIEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGSIEGNDG 480

Query: 233 ---------------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                                +      +    F V  + D    +  L ALE+ +    
Sbjct: 481 SGNNNGGSAITRPGVEDRMNVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEI 540

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P +T  + + A    G +  Y   SSS+GATSVT     + L  TP +    R+ L 
Sbjct: 541 IASPRVTTANQKPALIEQGTEIPYVE-SSSSGATSVTFKKAVLSLKVTPQITPDNRVILD 599

Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +          +    GD  S   +   T V + +G T+VL G+ +  I+     +PLL 
Sbjct: 600 LTVTQDTKGETVPTGTGDAVSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLG 659

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP LG LFR +    ++ E+ I  TP +V
Sbjct: 660 DIPGLGVLFRKTTSENKKRELLIFVTPKIV 689


>gi|59800555|ref|YP_207267.1| hypothetical protein NGO0094 [Neisseria gonorrhoeae FA 1090]
 gi|240117229|ref|ZP_04731291.1| hypothetical protein NgonPID_02009 [Neisseria gonorrhoeae PID1]
 gi|268602920|ref|ZP_06137087.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID1]
 gi|293397705|ref|ZP_06641911.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae F62]
 gi|62900657|sp|Q5FAD2|PILQ_NEIG1 RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           AltName: Full=Outer membrane protein omc; Flags:
           Precursor
 gi|59717450|gb|AAW88855.1| pilus secretion protein [Neisseria gonorrhoeae FA 1090]
 gi|268587051|gb|EEZ51727.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID1]
 gi|291611651|gb|EFF40720.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae F62]
          Length = 723

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 22/260 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------SSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 457 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 515

Query: 236 GK------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 516 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 575

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   ++S G  S  T      + L  TP +   G+I + ++     P  
Sbjct: 576 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 635

Query: 342 GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +  + +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF+ 
Sbjct: 636 CASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 695

Query: 401 SRFNREETEIFIAATPFLVK 420
                +  E+ I  TP ++ 
Sbjct: 696 RGKKTDRRELLIFITPRIID 715


>gi|296390960|ref|ZP_06880435.1| general secretion pathway protein D [Pseudomonas aeruginosa PAb1]
          Length = 786

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 29/328 (8%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++LL+     QV ++  I EV  D   + G Q  
Sbjct: 432 QADATTNTLLISAPEPLYRN--LREVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQ 488

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
                                + G                 G   + G+      + +  
Sbjct: 489 AGNLGGNGVFGGVNFGQSALNTAGKNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLAR 548

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
           AL+       L+ P L  +  +SAS   G    + +         +S+    ++   D G
Sbjct: 549 ALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVG 608

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L +  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 609 LKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGL 668

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L+D++Q   +G+P LS +P +G+LFR  + +R +T + +   P++V+  A    S   + 
Sbjct: 669 LQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMVFLRPYIVRDAAAG-RSITLNR 727

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           Y     A+     R +   G  +A  + 
Sbjct: 728 YDFIRRAQQRVQPRHDWSVGDMQAPVLP 755


>gi|186897240|ref|YP_001874352.1| putative outer membrane porin HofQ [Yersinia pseudotuberculosis
           PB1/+]
 gi|186700266|gb|ACC90895.1| type IV pilus secretin PilQ [Yersinia pseudotuberculosis PB1/+]
          Length = 500

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  +  + L+++G +  +    G+++     F  +      +    F V  +
Sbjct: 269 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 328

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +    E+   +  +A P L     Q+AS   G    Y        A ++   
Sbjct: 329 GGRLLELELSAL-EQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 387

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P I +  G+  M     ++  T V +  G TI
Sbjct: 388 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 447

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +Q    +PLL+ IP+LGA+FR     +   E+ I  TP L+
Sbjct: 448 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLI 498


>gi|330875847|gb|EGH09996.1| general secretion pathway protein D [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 775

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 117/308 (37%), Gaps = 21/308 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206
           G   + +    +  ++    S     +   +  K++ + +        QV ++  I EV 
Sbjct: 455 GSNASSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 514

Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258
                 +G Q  +     +SG + +     G +     G  ++      F      + + 
Sbjct: 515 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 574

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312
            L ALE     + L+ P+L  ++ Q A    G              S++T  +SV     
Sbjct: 575 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 634

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIV 369
           GV+L   P +   G + + IQ +VS      N       P    R   T V   SG T++
Sbjct: 635 GVILDVVPRINPGGLVYMDIQQQVSNADTNTNNNDANGNPRISSRSVSTQVAAQSGQTVL 694

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++   +     +
Sbjct: 695 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTTKSKGRTELIVLITPRVI--TSSSQARQ 752

Query: 430 PDDHYSVE 437
             D Y  +
Sbjct: 753 VTDDYRQQ 760


>gi|254357385|ref|ZP_04973659.1| general secretion pathway protein D [Burkholderia mallei
           2002721280]
 gi|148026449|gb|EDK84534.1| general secretion pathway protein D [Burkholderia mallei
           2002721280]
          Length = 750

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 52/312 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230
           + V++ L+     QV ++  + E++      +G Q  +  +            +G   S 
Sbjct: 387 RAVIDQLDSR-RAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 445

Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277
                G   + GG     G +                    +L     ++    L+ P L
Sbjct: 446 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 505

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
             +  + A    G      T S S   +  T          D G+ LH  P +   G + 
Sbjct: 506 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 565

Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ Q     +
Sbjct: 566 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 625

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           PLL  IP +G LFR+    R++T + +   P ++                  + A+A   
Sbjct: 626 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 670

Query: 446 NRVNKIYGPKEA 457
           NR + I G   A
Sbjct: 671 NRYDYIQGVTGA 682


>gi|117620160|ref|YP_855102.1| general secretion pathway protein D [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561567|gb|ABK38515.1| general secretion pathway protein D [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 677

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 106/267 (39%), Gaps = 25/267 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
           ++V+  L+I    QV ++  I E+       +G Q + T              G   ++ 
Sbjct: 341 EQVVAKLDIR-RAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTDTNLPIGSVAIAA 399

Query: 241 -----EGGDFSVKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQSA 285
                 G    +  +   F+          +  ++ AL   T    L+ P++  +  + A
Sbjct: 400 KDYQKNGTTTGLAALAKDFNGMAAGFYKGNWAALVTALSTNTKNDILSTPSIVTMDNKEA 459

Query: 286 SFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           SF  G +   ++ S S+        ++     G  L  TP +     + L I+ EVS   
Sbjct: 460 SFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLNIEQEVSSVA 519

Query: 341 IGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                G     P++  R     V + SG T+VL GL+ +  Q+    +PLL  IP+LG L
Sbjct: 520 QTQAPGTSTLGPTFDTRTIKNAVLVKSGETVVLGGLMDEKTQEKVSKVPLLGDIPVLGYL 579

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAM 424
           FR++  +  +  + +   P +++   +
Sbjct: 580 FRSTSNSTSKRNLMVFIRPTILRDADV 606


>gi|304311962|ref|YP_003811560.1| Fimbrial type-IV assembly protein, outer membran secretin [gamma
           proteobacterium HdN1]
 gi|301797695|emb|CBL45917.1| Fimbrial type-IV assembly protein, outer membran secretin [gamma
           proteobacterium HdN1]
          Length = 710

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 116/275 (42%), Gaps = 32/275 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------------- 219
           + +++ L++    QV ++  I   R ++ +++G + ++                      
Sbjct: 438 RYMLDQLDVP-VRQVLIEARIVIARANVGEEMGVRWNVVQRGKVGEDFHNVFLSGKGTGV 496

Query: 220 -----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRT 271
                + +++G            F  +GGD S   +    D+   +  L ALE       
Sbjct: 497 ESNVESLTNTGKFTIGTNTVPLDFSVQGGDASSLALGLFDDKGLLDIELSALESEGRADV 556

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           ++ P +     Q A   SG +  Y+  SSS GAT+ +  +  + L  TP +   GRI + 
Sbjct: 557 VSTPKVLTADQQKAKVASGTEIPYQEASSS-GATTTSFKEAVLSLEATPQITPDGRIIMD 615

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++           A ++P       +T+V + +G T+VL G+ + +  +     P L  +
Sbjct: 616 LKVNQDSIGDIDTASNIPIIDTNSVETSVIVDNGQTVVLGGVFRSEEIKSVAKTPFLGDL 675

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+LG LFR +  ++ +TE+ +  TP +V  V  + 
Sbjct: 676 PVLGRLFRKNVSSQAKTELLVFITPKIVTDVVAKQ 710


>gi|292900933|ref|YP_003540302.1| protein transport protein [Erwinia amylovora ATCC 49946]
 gi|291200781|emb|CBJ47915.1| protein transport protein [Erwinia amylovora ATCC 49946]
          Length = 406

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 135/314 (42%), Gaps = 31/314 (9%)

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI--QDSQRAVELSETFLSQSGR 173
           +  D A +  +L+        R+     ++ L     ++  +D+++A+  +E ++ Q   
Sbjct: 115 VHADAASVNTSLQS----ERARLMSARGSITLDSRTNSLLLRDTEKALAQTEHWVRQ--- 167

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKS 229
                         L++  E Q+ L   I  +  + L+++G    ++G    + +  +  
Sbjct: 168 --------------LDVPLE-QIELAAQIVTMSEESLRELGVTWGMSGEAQVADALRTSQ 212

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              D      +     ++   LD    E  L ALE       +A P L     Q+AS   
Sbjct: 213 LRVDLASGRPAGVAGLTLA-KLDGRLLELELSALESEHQADIIASPRLFTSHQQTASIKQ 271

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347
           G +  Y+  + ++G+T++   +  + +  TP V S GRI L++    + P   + +G+  
Sbjct: 272 GTEIPYEVSTGNSGSTTMEFKEAMLAMEVTPLVQSNGRILLKLHISQNVPGRNMRSGENE 331

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ DT V L  G T+ L G+ +         +P L  IP+LG+LFR+    ++ 
Sbjct: 332 VLTIDKQEIDTQVMLKDGQTLALGGIFQQQSATGSTRVPWLGDIPLLGSLFRHDVRQQKR 391

Query: 408 TEIFIAATPFLVKP 421
            E+ I  TP LV+ 
Sbjct: 392 RELVIFITPRLVRD 405


>gi|117922096|ref|YP_871288.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. ANA-3]
 gi|117614428|gb|ABK49882.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. ANA-3]
          Length = 561

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 121/303 (39%), Gaps = 23/303 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  ++      ++ V   +  L             +  +N      + QV L+  I EV 
Sbjct: 242 LSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEVT 301

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHA 262
                Q G Q        G +        G  +S+    S+ GV    +    F T++  
Sbjct: 302 LSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMISL 361

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312
           L+    +  L+ P +TA + Q A    G    + T  SST   G T VTT          
Sbjct: 362 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 421

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELP 363
           G+ L  TP +   G + L +   V        +  +   + ++P     +R++DT +   
Sbjct: 422 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRAA 481

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SG  +V+ GL+K +  ++   +PLL  IP++G LF+N    +++TE+ I   P +V    
Sbjct: 482 SGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVVGGDT 541

Query: 424 MRD 426
            R+
Sbjct: 542 WRN 544


>gi|218782642|ref|YP_002433960.1| type II and III secretion system protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764026|gb|ACL06492.1| Type II and III secretion system protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 566

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 68/277 (24%), Positives = 116/277 (41%), Gaps = 43/277 (15%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------------GSSSGP 226
           ++N L+     QV +K  I E  RD  + +G Q                     G +SG 
Sbjct: 268 LINKLD-RPPYQVHIKANIVETTRDTARDLGVQWGWMYGRYDSLGNDTDFWLTPGGNSGS 326

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSF------------------------ETVLHA 262
           + S  A   G + +  G   V G  +  +F                        E  L A
Sbjct: 327 AASRDAPLTGGYTAGTGSKGVSGQGNGINFPVDFEDAMGATMGLMFGKVGSNILEVQLSA 386

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           L  A  I  L+ P++T +  Q+AS  +G +  Y T+ +  G   V   D  ++L  TP V
Sbjct: 387 LADAGKINILSTPSITTLDNQTASTENGTEVPYVTI-NEDGDREVKFKDATLMLEITPHV 445

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +  G++ +++  +  E  +  N    P    ++ +T++ + +G T+V++GL K    +  
Sbjct: 446 IDEGQMKMKVSIKKDEVDLSRNVDGNPFILKKRTETSLIVRNGETVVISGLSKTRNTEGD 505

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            GIP L  IP LG LF++   +    E+ I  TP ++
Sbjct: 506 TGIPWLKDIPGLGYLFKSESKSEAMEEVLIFLTPTVL 542


>gi|171059772|ref|YP_001792121.1| pilus (MSHA type) biogenesis protein MshL [Leptothrix cholodnii
           SP-6]
 gi|170777217|gb|ACB35356.1| pilus (MSHA type) biogenesis protein MshL [Leptothrix cholodnii
           SP-6]
          Length = 577

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 125/320 (39%), Gaps = 47/320 (14%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-------------KSFAADF 234
           + ++ E QV L+  I EV      Q G   S  G + G +              S A   
Sbjct: 245 VQVSIERQVMLEAKILEVELGSEAQSGINWSAFGRALGGALSIGLVQPGVTLAGSGALTL 304

Query: 235 GGKFVSEGGDFSVKGVLDRF--------SFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           GG  ++ GG+ +       F        +F  +L  LE    ++ L+ P +  ++ Q A 
Sbjct: 305 GGTSITPGGNLAASSSGAPFYGLAFQSANFAALLSFLESQGKVQVLSSPRIATLNNQKAV 364

Query: 287 FTSGGQHLYKTV-----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
              G   LY T            S+ST +  +     G+ L  TP +   G++ L +   
Sbjct: 365 LKVGSDELYVTGVSSTTTATGSTSTSTPSVVLQPFFSGIALDVTPQIDDQGQVMLHVHPA 424

Query: 336 VSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           +S             +G     + S  V + D+ V +  G  + + GL+  + ++ +  +
Sbjct: 425 ISTVSEKQKNINLGSLGSYQLPLASSTVNETDSIVRVRDGQIVAIGGLMSQEQREERSAV 484

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD-DHYSVEDDAKAFF 444
           P L  +P++G LFR +     + E+ I   P +++     D   P+ D +      + + 
Sbjct: 485 PGLGDVPLVGGLFRQTSTVMRKRELVILIKPTVIRA----DGPWPEADTHQPASQLQPWR 540

Query: 445 FNRVNKIYGPKEASEVEGQN 464
            + ++++  P+ A++     
Sbjct: 541 PDAMSQLQLPQAATDSPSDA 560


>gi|56461571|ref|YP_156852.1| Type II secretory pathway, component PulJ [Idiomarina loihiensis
           L2TR]
 gi|56180581|gb|AAV83303.1| Type II secretory pathway, component PulJ [Idiomarina loihiensis
           L2TR]
          Length = 427

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 104/250 (41%), Gaps = 11/250 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFA 231
           ++ ++++N L++    QV ++  +  V+ ++ K++G +  ++         +    K   
Sbjct: 177 ATIRQLVNDLDVP-VKQVLIEARMVTVKANVSKELGIRWGVSEYGLAIPEDAGSFVKGMQ 235

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            D      +     ++  + D    +  L ALE+      +  P +   + Q A    G 
Sbjct: 236 VDLPTAAPAGTFSANLARLSDDILLDLELTALEQENKAEIITSPKIFTSNQQPAYIEQGT 295

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS- 350
           +  Y   ++  GAT+V      + L  TP +     + + +    +     V     P+ 
Sbjct: 296 EIPYVETAAH-GATAVQFKKAVMGLSVTPQITPNNHVLMELTITQNTRGDTVATPTGPAV 354

Query: 351 -YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               ++  T V   +G TIVL G+ ++        +P+L  +P++G LF + +   E+ E
Sbjct: 355 AIDTQEMSTRVLAKNGETIVLGGIFQEHNLNDDSRVPILGSLPLIGKLFSHQQQRDEKRE 414

Query: 410 IFIAATPFLV 419
           + I  TP ++
Sbjct: 415 LMIFVTPTIL 424


>gi|91224969|ref|ZP_01260228.1| general secretion pathway protein D precursor [Vibrio alginolyticus
           12G01]
 gi|91190215|gb|EAS76485.1| general secretion pathway protein D precursor [Vibrio alginolyticus
           12G01]
          Length = 672

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 110/290 (37%), Gaps = 45/290 (15%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSF- 230
           + + V++ L+I    QV ++  I E+       +G Q            G+S  P     
Sbjct: 329 ALQDVISQLDIR-RAQVLIEALIVEMSEGDGINLGVQWGSLETGAVIQYGNSGAPIGQVM 387

Query: 231 -----------------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
                                        + D+     +  G       +    +  ++ 
Sbjct: 388 VGLEEAKDQTRTEYYTNSNGERTPYDVTESGDYSTLASALSGVNGAAMSIVMGDWTALIS 447

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVL 316
           A+   +    L+ P++T +    ASF  G +    T S++         +V   + G+ L
Sbjct: 448 AVASDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKL 507

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
              P +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +
Sbjct: 508 KVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDE 566

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
              + +  +PLL  IP+LG LF+++    E+  + +   P +++     D
Sbjct: 567 RALESESKVPLLGDIPVLGHLFKSTSTQTEKRNLMVFIKPTIIRDGVTAD 616


>gi|307131443|ref|YP_003883459.1| general secretion pathway protein D [Dickeya dadantii 3937]
 gi|306528972|gb|ADM98902.1| General secretion pathway protein D [Dickeya dadantii 3937]
          Length = 696

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 16/250 (6%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG- 242
           ++  L++  E QV ++  + EV++     +G        + G S     + G  F     
Sbjct: 396 IIQQLDVRHE-QVLVEAIVVEVQQAEGLNLGIAWG--NKNYGGSNFNGVNVGNGFNQANP 452

Query: 243 ------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                 G   +       S+ ++ +ALE       LA P++  +    A F  G      
Sbjct: 453 LVDALKGTEGLIAGFYHGSWGSLFNALESNKRNNILATPSVVTLDNHRAEFNVGQDVPIL 512

Query: 297 TVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350
           T S +T       +V     G+     P +   G I L I  E+S       VN+     
Sbjct: 513 TGSQTTNNDNIFNTVQRRTIGIKFSILPRINQSGTILLNISQEISSLSDTSQVNSNLGSV 572

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           + +R  +  V++    T+V+ GLL D+ ++    +PLL  IP LG LFR +  N ++  +
Sbjct: 573 FNIRTVNNVVQVQDDETVVIGGLLDDEKKETANKVPLLGDIPWLGNLFRYTSQNNDKRNL 632

Query: 411 FIAATPFLVK 420
            +   P +++
Sbjct: 633 MLFIRPRIIR 642


>gi|322421237|ref|YP_004200460.1| general secretion pathway protein D [Geobacter sp. M18]
 gi|320127624|gb|ADW15184.1| general secretion pathway protein D [Geobacter sp. M18]
          Length = 638

 Score =  186 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 14/253 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-------- 234
           +V+  L+     QV ++  IAEV  +  K +G Q  +  ++S  + S    F        
Sbjct: 345 QVIQKLDRR-SRQVYVQAMIAEVSVNKAKDLGVQLGVITAASNGTVSAIGTFDPFGTVAG 403

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
               V+      ++  L + +   VL AL+   A+  L+ P +     + A    G    
Sbjct: 404 LSTTVTAAKALGMEVTLGKVNIPVVLQALQTNGALNVLSTPNIMTSDNKEAEIFVGESVP 463

Query: 295 YKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMP 349
           + + ++ T       S+   D G++L   P +     + L I  E+S     G       
Sbjct: 464 FVSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYVKLDIYQEISAVKEFGTATESNL 523

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R A T+V + +  T+++ GL++D  Q  +  IPLL  IP LG LF+     R++  
Sbjct: 524 GSTKRSAKTSVVVKNSDTVLIGGLIQDTDQVTESKIPLLGDIPGLGWLFKTRSTKRDKVN 583

Query: 410 IFIAATPFLVKPV 422
           + I  TP ++K  
Sbjct: 584 LLIMLTPRIIKDA 596


>gi|209515818|ref|ZP_03264681.1| general secretion pathway protein D [Burkholderia sp. H160]
 gi|209503845|gb|EEA03838.1| general secretion pathway protein D [Burkholderia sp. H160]
          Length = 792

 Score =  186 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 71/313 (22%), Positives = 118/313 (37%), Gaps = 53/313 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-- 239
           + V++ L+ A   QV ++  I E+  +    +G Q  +   +     + A   G   +  
Sbjct: 399 RAVIDQLD-ARRAQVYIEALIVELNSNTAGNLGIQWQVANGNLFAGTNLATGTGNSIINL 457

Query: 240 --------SEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPT 276
                   S GG  +  G               +        +L AL +      L+ P 
Sbjct: 458 TAAAAADASTGGLATALGASGLQQGLNVGWIHNLFGVQGLGALLQALSQTADANVLSTPN 517

Query: 277 LTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G     +T S        +ST   +    D G+ LH  P +   G +
Sbjct: 518 LITLDNEEAKIIVGTNVPIQTGSYSNLTSSATSTAFNTFDRVDIGLTLHVKPQITDGGIL 577

Query: 329 GLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L++ TE S  V G N        P +  R   +TV   +G  IVL GL++D+ Q     
Sbjct: 578 KLQLYTEDSAIVNGTNNSTTNPAGPEFTKRSIQSTVLCDNGEIIVLGGLMQDNYQVSNSK 637

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +PLL  IP +G LFR+ +  R +T + +   P ++               S  +  +A  
Sbjct: 638 VPLLGDIPWVGQLFRSEQKTRNKTNLMVFLRPVIL---------------SDRETTQAVS 682

Query: 445 FNRVNKIYGPKEA 457
            NR + I G + A
Sbjct: 683 ANRYDYIQGVQGA 695


>gi|296105083|ref|YP_003615229.1| outer membrane porin HofQ [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295059542|gb|ADF64280.1| outer membrane porin HofQ [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 213

 Score =  186 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 3/197 (1%)

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G   +  +D      +    F++ G ++    +  L ALE+   +  +A P L A   Q 
Sbjct: 15  GQMTTLGSDLSVASATSHVGFNI-GRINGRLLDLELSALEQKQQVDIIASPRLLASHMQP 73

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIG 342
           AS   G +  Y+  S  +GATSV   +  + +  TP VL  GR+ L++    + P  V+ 
Sbjct: 74  ASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPVVLPGGRVRLKLHISENMPGQVLQ 133

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
              G+  +   ++ +T VE+ SG T+ L G+     +   + +P L KIP LG LFR+  
Sbjct: 134 QADGETLAIDKQEIETQVEVKSGETLALGGIFSQKNKTGSDSVPGLGKIPWLGQLFRHDG 193

Query: 403 FNREETEIFIAATPFLV 419
            + E  E+ +  TP LV
Sbjct: 194 KDNERRELVVFITPRLV 210


>gi|311693369|gb|ADP96242.1| type 4 fimbrial biogenesis protein PilQ [marine bacterium HP15]
          Length = 688

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 101/260 (38%), Gaps = 31/260 (11%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------- 242
            QV+++  I   + ++ + +G +             F        + E            
Sbjct: 432 RQVSIEARIVRAQTNVAENLGVRWGGAAYDVSGDNVFTVGGSQGSLQEARDAAAGNSNTI 491

Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                              F++    D F  +  L ALE       +++P +     Q+A
Sbjct: 492 SFPGALAVDLGVSGEGTSSFAIGWGSDNFLVDLELSALESDGQAEVVSQPRVVTADRQTA 551

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           S  SG +  Y+  +SS GAT++   +  + L  TP +    +I + +   V++   G   
Sbjct: 552 SIKSGEEIPYQEATSS-GATNIEFKEAVLSLEVTPQITPDDKIIMDL--VVNQDSRGEVT 608

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +PS       T V + +G T+VL G+ + ++       P L  IP LG +F+ +    
Sbjct: 609 AGIPSINTNSVTTQVLVGNGETVVLGGIFQSEVATQTTKTPFLGDIPYLGRIFKRTEHLD 668

Query: 406 EETEIFIAATPFLVKPVAMR 425
           E +E+ I  TP ++K   +R
Sbjct: 669 ERSELLIFITPKIIKNDLLR 688


>gi|300702828|ref|YP_003744429.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CFBP2957]
 gi|299070490|emb|CBJ41785.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CFBP2957]
          Length = 713

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 98/249 (39%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------------PSKSF 230
            QV ++  I E      + +G +      ++G                       P+ S 
Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNSYTNVTSPVTTNGTWTTDPAVSL 520

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV      + L  TP +   G + L +  +V++  +G    +  +
Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLDV--DVNKDSVGTQTTNGFA 637

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++    + TE+
Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 698 LVFLTPRVL 706


>gi|269959419|ref|ZP_06173802.1| general secretion pathway protein D [Vibrio harveyi 1DA3]
 gi|269835856|gb|EEZ89932.1| general secretion pathway protein D [Vibrio harveyi 1DA3]
          Length = 675

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 134/370 (36%), Gaps = 70/370 (18%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNI 190
           VL G+   +Q  ++A +   +   +      A+ ++                 V++ L+I
Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSF------------- 230
               QV ++  I E+       +G Q         I   ++G                  
Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGNLETGAVIQYGNTGAQIGNVMVGLEEAKDQTR 399

Query: 231 ------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                             + D+     + GG       +    +  ++ A+   +    L
Sbjct: 400 TEYYTNSDGERTPYDVTESGDYSTLAAALGGVNGAAMSIMMGDWTALITAVSSDSNSNIL 459

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGR 327
           + P++T +    ASF  G +    T S++         +V   + G+ L   P +     
Sbjct: 460 SSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDS 519

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + +  +PL
Sbjct: 520 VQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPL 578

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  IP++G LF+++    E+  + +   P +++     D              + + F R
Sbjct: 579 LGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIRDGMTADGIT----------QRKYNFIR 628

Query: 448 VNKIYGPKEA 457
             ++Y  +E 
Sbjct: 629 AEQLYKAQEG 638


>gi|209756638|gb|ACI76631.1| putative transport protein [Escherichia coli]
 gi|320645172|gb|EFX14188.1| outer membrane porin HofQ [Escherichia coli O157:H- str. 493-89]
 gi|320650483|gb|EFX18949.1| outer membrane porin HofQ [Escherichia coli O157:H- str. H 2687]
          Length = 412

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 119/252 (47%), Gaps = 8/252 (3%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229
           N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +      G   +
Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +D      +    F++ G ++       L ALE+   +  +A P L A   Q AS   
Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLALELSALEQKQQLDIIASPRLLASHLQPASIKQ 277

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    + P  V+    G+
Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 398 RELVVFITPRLV 409


>gi|290473150|ref|YP_003466011.1| putative transporter [Xenorhabdus bovienii SS-2004]
 gi|289172444|emb|CBJ79211.1| putative transport protein, possibly in biosynthesis of type IV
           pilin (fragment) [Xenorhabdus bovienii SS-2004]
          Length = 361

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 12/235 (5%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             + QV +   I    R+ L ++G    +       S               G+ S + V
Sbjct: 129 TPQQQVQITAHIVTSSREALHELGIHWGMAADPLNRSIGLNR---LNLHQSAGNQSHRLV 185

Query: 251 LDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           L+         E  L ALE+   +  +A P LTA   Q AS   G    Y         T
Sbjct: 186 LNTARIHASLLEMELSALEQENQLDIIASPRLTASHQQPASIKQGSDIPYLV--QDKDKT 243

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SYRVRKADTTVELP 363
           ++   +  + +  TP +L  G+I L ++   + P + ++ G     +   ++  T V + 
Sbjct: 244 TIQFKEAVLGMEVTPHILRKGKIRLALKISQNAPGLPISQGGNENLAIDKQEIVTQVTVR 303

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +G T++L G+ +       + +P LS +P+LGALF          E+ I  TP L
Sbjct: 304 NGETLILGGIFQQKKGASLQKVPYLSDLPLLGALFNQKGEQHSRRELVIFITPQL 358


>gi|50122032|ref|YP_051199.1| general secretion pathway protein D [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612558|emb|CAG76008.1| general secretion pathway protein D [Pectobacterium atrosepticum
           SCRI1043]
          Length = 650

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 125/331 (37%), Gaps = 36/331 (10%)

Query: 146 VLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYAN----------SSSKKVMNLLNIAGED 194
           VL G+  +IQ D Q A+      +S     Q  +             ++V+  L+I    
Sbjct: 276 VLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP- 334

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKF 238
           QV ++  IAEV+      +G Q +   +      +                     G   
Sbjct: 335 QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAA 394

Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
            S  G F+ +     + ++  ++ AL   +    LA P++  +    A+F  G +     
Sbjct: 395 TSALGSFNGIAAGFYQGNWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLA 454

Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPS 350
             +T S      +V     G+ L   P +     + L I+ EVS      +        +
Sbjct: 455 GSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLGAT 514

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+V+ GLL     +    +P L  IPILG LFR++    ++  +
Sbjct: 515 FNTRTVNNAVLVSSGETVVVGGLLDKSTNESASKVPFLGDIPILGHLFRSNSQETKKRNL 574

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
            +   P +++  +    +    ++S  ++ +
Sbjct: 575 MLFIRPSIIRDRSQYQSASASKYHSFSNEEQ 605


>gi|56476309|ref|YP_157898.1| general (Type II) secretion pathway (GSP) D protein [Aromatoleum
           aromaticum EbN1]
 gi|56312352|emb|CAI06997.1| General (Type II) secretion pathway (GSP) D protein [Aromatoleum
           aromaticum EbN1]
          Length = 769

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 99/236 (41%), Gaps = 7/236 (2%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFVSEGGDFSVK 248
              QV ++ +I EV      + G Q    G   G    S  F              FS  
Sbjct: 482 SPTQVLIEASILEVTLSDETRFGLQWFFEGKLGGDYRGSGLFTDRASETLGRTVPGFSYS 541

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGA 304
                     VL+A+ + + +  ++ P++  +   +A    G Q             T +
Sbjct: 542 ITNAAGQVRAVLNAMAQKSLVNVISSPSVMVLDNHTAVIHVGDQQPIRSTQTVTDGGTTS 601

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           TS+   D GV+L  TP+  + G + + I+  V++     +A    S+  R+  + V + +
Sbjct: 602 TSIQYKDTGVMLQVTPSANAGGMVAMDIKQSVTDVGAVDDATGQRSFNQREVASKVAVRT 661

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T++L GL++D     K G+P L  IP+LG LF  +      TE+ +  TP +V+
Sbjct: 662 GETVILGGLIRDSDTNGKTGVPWLHDIPVLGPLFGTTSDVTRRTELLVMITPRVVQ 717


>gi|113971816|ref|YP_735609.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-4]
 gi|113886500|gb|ABI40552.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-4]
          Length = 561

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 119/296 (40%), Gaps = 23/296 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  ++      ++ V   +  L             +  +N      + QV L+  I EV 
Sbjct: 242 LSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEVT 301

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHA 262
                Q G Q        G +        G  +S+    S+ GV    +    F T++  
Sbjct: 302 LSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMISL 361

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312
           L+    +  L+ P +TA + Q A    G    + T  SST   G T VTT          
Sbjct: 362 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 421

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELP 363
           G+ L  TP +   G + L +   V        +  +   + ++P     +R++DT +   
Sbjct: 422 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRAA 481

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           SG  +V+ GL+K +  ++   +PLL  IP++G LF+N    +++TE+ I   P +V
Sbjct: 482 SGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537


>gi|114045976|ref|YP_736526.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-7]
 gi|113887418|gb|ABI41469.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-7]
          Length = 561

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 119/296 (40%), Gaps = 23/296 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  ++      ++ V   +  L             +  +N      + QV L+  I EV 
Sbjct: 242 LSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEVT 301

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHA 262
                Q G Q        G +        G  +S+    S+ GV    +    F T++  
Sbjct: 302 LSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMISL 361

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312
           L+    +  L+ P +TA + Q A    G    + T  SST   G T VTT          
Sbjct: 362 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 421

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELP 363
           G+ L  TP +   G + L +   V        +  +   + ++P     +R++DT +   
Sbjct: 422 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRAA 481

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           SG  +V+ GL+K +  ++   +PLL  IP++G LF+N    +++TE+ I   P +V
Sbjct: 482 SGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537


>gi|240079992|ref|ZP_04724535.1| PilQ [Neisseria gonorrhoeae FA19]
 gi|268596134|ref|ZP_06130301.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae FA19]
 gi|268549922|gb|EEZ44941.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae FA19]
          Length = 731

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 106/260 (40%), Gaps = 22/260 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K+++ L++    QV ++  I E      + +G +   TG     +++ A  +G      
Sbjct: 465 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFR 523

Query: 242 GGD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           GGD                   S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   ++S G  S  T      + L  TP +   G+I + ++     P  
Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643

Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               +  +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF+ 
Sbjct: 644 CASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703

Query: 401 SRFNREETEIFIAATPFLVK 420
                +  E+ I  TP ++ 
Sbjct: 704 RGKKTDRRELLIFITPRIID 723


>gi|254673580|emb|CBA09077.1| fimbrial assembly protein [Neisseria meningitidis alpha275]
          Length = 687

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 421 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 479

Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 480 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 539

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   S + G +S  T      + L  TP +   G+I + ++     P  
Sbjct: 540 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 599

Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+ 
Sbjct: 600 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 659

Query: 401 SRFNREETEIFIAATPFLV 419
                +  E+ I  TP ++
Sbjct: 660 RGKKTDRRELLIFITPRIM 678


>gi|298530088|ref|ZP_07017490.1| type II and III secretion system protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509462|gb|EFI33366.1| type II and III secretion system protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 504

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 7/245 (2%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFVS 240
           K +N L+     Q+ ++  I E  +   +++G + S    +  S   +    D       
Sbjct: 260 KAINHLDRPRP-QILMEANIVEATQRTARELGVRWSGRYVTPLSFEDEVGFGDLLRDEAG 318

Query: 241 EGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             GD  +  +  R         L ALER   +  L  P++T +  Q A    G +  Y+T
Sbjct: 319 YTGDMDLSVISARLPGSVLYAHLQALERDGEVNILTSPSITTMDNQMAFTEHGQRVPYET 378

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
           V    G+ +V   D  + L   P+V+    + + I+    E     +    P  R +  +
Sbjct: 379 V-DEDGSRTVEFEDAVLRLEVVPSVMEGNHLKMDIRVNKDEVDFTRDVRGQPVIRTKHTE 437

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T + +  G TIV++GL K+ +   + G+  L  +P LG LF++    +E  E  I  TP 
Sbjct: 438 TNLVVRDGETIVISGLSKETLSDTERGVMGLRDLPGLGWLFKSREQEQEMEEFLIFITPT 497

Query: 418 LVKPV 422
           +++P 
Sbjct: 498 ILEPQ 502


>gi|207721850|ref|YP_002252288.1| fimbrial type-4 assembly protein [Ralstonia solanacearum MolK2]
 gi|206587017|emb|CAQ17601.1| fimbrial type-4 assembly protein [Ralstonia solanacearum MolK2]
          Length = 713

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 98/249 (39%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------------PSKSF 230
            QV ++  I E      + +G +      ++G                       P+ S 
Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNSYTNVTSPITTNGTWTTDPAVSL 520

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV      + L  TP +   G + L +  +V++  +G    +  +
Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLDV--DVNKDSVGTQTTNGFA 637

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++    + TE+
Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 698 LVFLTPRVL 706


>gi|107100151|ref|ZP_01364069.1| hypothetical protein PaerPA_01001172 [Pseudomonas aeruginosa PACS2]
          Length = 786

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 29/328 (8%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++LL+     QV ++  I EV  D   + G Q  
Sbjct: 432 QADATTNTLLISAPEPLYRN--LREVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQ 488

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
                                + G                 G   + G+      + +  
Sbjct: 489 AGNLGGNGVFGGVNFGQSALNTAGKNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLAR 548

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
           AL+       L+ P L  +  +SAS   G    + +         +S+    ++   D G
Sbjct: 549 ALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVG 608

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L +  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 609 LKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGL 668

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L+D++Q   +G+P LS +P +G+LFR  + +R +T + +   P++V+  A    S   + 
Sbjct: 669 LQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMVFLRPYIVRDAAAG-RSITLNR 727

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           Y     A+     R +   G  +A  + 
Sbjct: 728 YDFIRRAQQRVQPRHDWSVGDMQAPVLP 755


>gi|215919282|ref|NP_820868.2| type II and III secretion system family protein [Coxiella burnetii
           RSA 493]
 gi|206584166|gb|AAO91382.2| type 4 pili secretin (outer membrane porin) [Coxiella burnetii RSA
           493]
          Length = 353

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 7/275 (2%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G++     +   V  ++ ++ +   + Y   S   +++ L+I    QV +K  I  +  
Sbjct: 63  SGILSKFGYAAADVRTNQLWIREEQTHIYLIQS---LVSQLDIPI-HQVLIKARIISISD 118

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERA 266
             L  +G       +++  +     D     +  G  D  +    +    +  L ALE+ 
Sbjct: 119 HNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQFGVADIPIIKFKNGQLLDLTLSALEQE 178

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + L+ P L   + Q+A   SG    Y+  +   G TSVT     + L  TP VL   
Sbjct: 179 GRAQVLSCPELMTNNRQTAIIESGEAIPYQEKTGQ-GNTSVTFKKATLRLKVTPVVLPGK 237

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           RI L++     + +       +P+ + ++  T V + +  T+VL G+ +   QQ + GIP
Sbjct: 238 RILLQLNVNQDK-MSSFLVNGVPTIQTQQLTTKVMVNNQETVVLGGIYEQSTQQEEAGIP 296

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            L KIPILG LFR+ + + E  ++ I  TP ++ P
Sbjct: 297 GLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISP 331


>gi|312972414|ref|ZP_07786588.1| general secretion pathway protein D [Escherichia coli 1827-70]
 gi|310334791|gb|EFQ00996.1| general secretion pathway protein D [Escherichia coli 1827-70]
          Length = 650

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 118/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q        V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 325 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 383

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 384 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 443

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 444 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 503

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PL 
Sbjct: 504 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLP 563

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 564 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 623

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 624 KALVGSEDLPVLDENTFN 641


>gi|254360608|ref|ZP_04976757.1| competence protein E [Mannheimia haemolytica PHL213]
 gi|153091148|gb|EDN73153.1| competence protein E [Mannheimia haemolytica PHL213]
          Length = 437

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 112/261 (42%), Gaps = 15/261 (5%)

Query: 175 QYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSG------- 225
           + +  S K + NL+    +   Q+ ++  I  +  + L+++G +  I    +G       
Sbjct: 165 KDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGR 224

Query: 226 ----PSKSFAADFGGKFVSEGGDFSVK--GVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                  +   +    F   GG  +V     ++    +  L ALE+  ++  +A P L  
Sbjct: 225 LEGNGLNNVTNNLNVNFPITGGASAVLQVSSINSRVLDLELSALEQENSVEIIASPRLLT 284

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            + + AS   G +  Y   ++ + AT V   +  + L   P + +  +I L +    + P
Sbjct: 285 TNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLGLEVVPHLSTQNQILLDLIVTQNSP 344

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                +  + +   ++ +T V    G TIVL G+ +   Q+ ++ +P+L  IP +  LF 
Sbjct: 345 NSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPILGSIPFIKRLFS 404

Query: 400 NSRFNREETEIFIAATPFLVK 420
            +R    + E+ I  TP++++
Sbjct: 405 QTRDKISKRELVIFVTPYILQ 425


>gi|84390819|ref|ZP_00991511.1| fimbrial assembly protein [Vibrio splendidus 12B01]
 gi|84376622|gb|EAP93499.1| fimbrial assembly protein [Vibrio splendidus 12B01]
          Length = 564

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 31/267 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------------- 219
           + ++  L+I    QV ++  I  V    L ++G +  +                      
Sbjct: 298 RGIIESLDIP-VKQVQIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQIT 356

Query: 220 ----TGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                G +S        + G    +     F V  +      +  L AL++ +    ++ 
Sbjct: 357 PYDDNGGNSAIDDFLNVNLGATSPNASSIAFQVAKLGSDTLLDLELSALQQESKAEIISS 416

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L   + + A    G +  Y   SSS+GATSV      + L  TP +    R+ L +  
Sbjct: 417 PRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSV 475

Query: 335 EVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
               P  V+    G+  +   ++  T V + +G T+VL G+ +  +    + +PLL  +P
Sbjct: 476 TQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLP 535

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
           +LGALFR S  N  ++E+ I  TP +V
Sbjct: 536 VLGALFRRSYENVGKSELLIFVTPKVV 562


>gi|126441466|ref|YP_001057062.1| general secretion pathway protein D [Burkholderia pseudomallei 668]
 gi|126220959|gb|ABN84465.1| general secretion pathway protein D [Burkholderia pseudomallei 668]
          Length = 757

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 113/312 (36%), Gaps = 52/312 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-------- 233
           + V++ L+ A   QV ++  + E++      +G Q  +  ++     +            
Sbjct: 394 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTNLGNSI 452

Query: 234 ---FGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277
                G   + GG     G +                    +L     ++    L+ P L
Sbjct: 453 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 512

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
             +  + A    G      T S S   +  T          D G+ LH  P +   G + 
Sbjct: 513 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 572

Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+ Q     +
Sbjct: 573 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 632

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           PLL  IP +G LFR+    R++T + +   P ++                  + A+A   
Sbjct: 633 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 677

Query: 446 NRVNKIYGPKEA 457
           NR + I G   A
Sbjct: 678 NRYDYIQGVTGA 689


>gi|291285874|ref|YP_003502691.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615]
 gi|290765747|gb|ADD59707.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615]
          Length = 656

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 121/335 (36%), Gaps = 43/335 (12%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192
           VL G+   I++  +    +E          +  +++             + V++ L+I  
Sbjct: 285 VLTGISSNIENDAKKSSSTEALRKGVTIKSHEQTNALILTGAPDVIRDLENVISQLDIRR 344

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------ 246
             QV ++  IAEV+      +G Q     S      S          +   D S      
Sbjct: 345 P-QVLVEAIIAEVQDADGLNLGIQWVNKHSGVTQFTSTGLPITTMVQTRQSDISDSDQSN 403

Query: 247 ----VKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---- 295
                 G+   F   ++  +L AL  ++    LA P++  +    A+F  G +       
Sbjct: 404 TLSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGS 463

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYR 352
           +T S      +V     G+ L   P +     + L I+ EVS      +        ++ 
Sbjct: 464 QTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFN 523

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R     + + +G T+V+ GLL   I+  +  +PLL  IP+LG LF +   +  +  + +
Sbjct: 524 TRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFSSKSEHAAKRNLML 583

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
              P +++           D +      K   FN+
Sbjct: 584 FIRPTIIR---------ERDGFRHASAEKYLSFNQ 609


>gi|206561863|ref|YP_002232628.1| type II secretion system protein D [Burkholderia cenocepacia J2315]
 gi|198037905|emb|CAR53850.1| type II secretion system protein D [Burkholderia cenocepacia J2315]
          Length = 777

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 122/345 (35%), Gaps = 53/345 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G         +A   + + +  +    Y N   + V++ L+ A   QV ++  I E+  
Sbjct: 366 SGDDNQPGGMIQADSATNSLIITASDPVYRN--LRSVIDQLD-ARRAQVYIEALIVELNS 422

Query: 208 DILKQIGFQH-----------------------SITGSSSGPSKSFAADFGGKFVSEGGD 244
               Q+G Q                        SI   ++G + S  A            
Sbjct: 423 TTQGQLGIQWQVASGQFLGGTNLAAAAGNVAGNSIINLTTGTAGSTGAGLAANLSGLNQG 482

Query: 245 FSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            ++  + + F       +L      +    L+ P L  +  + A    G      T S S
Sbjct: 483 LNIGWLHNMFGVQGLGALLQYFSGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYS 542

Query: 302 TGATSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYR 352
              +  T          D G+ LH  P +   G + L++ TE S  V G  +    P++ 
Sbjct: 543 NLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTSAQTGPTFT 602

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   +T+   +G  IVL GL++D+       +PLL  IP +G LFR+    R++T + +
Sbjct: 603 KRSIQSTILADNGEIIVLGGLMQDNYAVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMV 662

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
              P ++               S    A+    NR + I G   A
Sbjct: 663 FLRPVII---------------SDRSTAQEVTANRYDYIQGVTGA 692


>gi|115350108|ref|YP_771947.1| general secretion pathway protein D [Burkholderia ambifaria AMMD]
 gi|115280096|gb|ABI85613.1| general secretion pathway protein D [Burkholderia ambifaria AMMD]
          Length = 777

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 110/310 (35%), Gaps = 50/310 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+ A   QV ++  I E+       +G Q  +         + A   G    + 
Sbjct: 399 RSVIDQLD-ARRAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLAPTAGTGLGNS 457

Query: 242 GGDFSVKGVLDRFSFETVLHALERA-------------------------TAIRTLAEPT 276
             + +  G          L  L +                          +    L+ P 
Sbjct: 458 IVNLTSGGTAATTGLAANLAGLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPN 517

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G      T S S   +  T          D G+ LH  P +   G +
Sbjct: 518 LITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGIL 577

Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            L++ TE S  V G  NA   P++  R   +T+   +G  IVL GL++D+ Q     +PL
Sbjct: 578 KLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPL 637

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  IP +G LFR+    R++T + +   P ++               S    A+    NR
Sbjct: 638 LGDIPWIGQLFRSESKQRQKTNLMVFLRPVII---------------SDRSTAQEVTANR 682

Query: 448 VNKIYGPKEA 457
            + I G   A
Sbjct: 683 YDYIQGVTGA 692


>gi|326796602|ref|YP_004314422.1| general secretion pathway protein D [Marinomonas mediterranea
           MMB-1]
 gi|326547366|gb|ADZ92586.1| general secretion pathway protein D [Marinomonas mediterranea
           MMB-1]
          Length = 623

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 143/375 (38%), Gaps = 37/375 (9%)

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
            AD        + L GK         +      +  LD         L+  +    AD+ 
Sbjct: 225 IADERT---NRLVLKGKEA------TLDQIEDLIQQLD-QPSDSTTRLK-VIPLRYADAK 273

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGE 193
              E+++  +      ++    + +   ++  L+    +   N  +    V++ L+I   
Sbjct: 274 TTAELITGLLSAEKTAQSSDRPESSFVQADESLNALVVSAEPNVMADILGVLSELDIP-R 332

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF----------------GGK 237
            QV ++  I EV+ +    +GFQ     +S   +     +F                G  
Sbjct: 333 AQVLIEAIIVEVKMEGSDALGFQWLFGDTSDSTTPVLGTNFSSAGSSLTDIATSVVAGTP 392

Query: 238 FVSEGGDFSVKGVLDRFSFET--VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
            +S G                  +L A+E  +    L+ P +  +  Q +    G    +
Sbjct: 393 TLSNGITVGAASFNSDGDLNMAGILQAIESNSNSNLLSTPKIMTLDNQKSKILVGETRPF 452

Query: 296 KTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           +T     SSS+   + +  D G+ L  TP + +   + + +   V       ++    + 
Sbjct: 453 QTGGYSDSSSSAFVTTSREDIGLTLEVTPHINADNEVKMEVNQIVEAASPEASSLGTIT- 511

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+ +TTV   +  TIVL GL++D++ ++++ +PLL  IPILGALFR+  +   +  + 
Sbjct: 512 TKREIETTVIAGNRKTIVLGGLIEDNVVEVEQKVPLLGDIPILGALFRSKSYENNKKNLL 571

Query: 412 IAATPFLVKPVAMRD 426
           +   P +++     +
Sbjct: 572 VFIRPTILRSAVEAE 586


>gi|189424703|ref|YP_001951880.1| type IV pilus secretin PilQ [Geobacter lovleyi SZ]
 gi|189420962|gb|ACD95360.1| type IV pilus secretin PilQ [Geobacter lovleyi SZ]
          Length = 891

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 108/261 (41%), Gaps = 22/261 (8%)

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSF 230
           + A    +K++  L++  E QV ++  I E      + +G    I       S     S 
Sbjct: 633 KSAVDDMRKILASLDVP-EKQVMIEARIVEASSTFTQSLGVNWGIHYRDGSASIAGINSM 691

Query: 231 AADFGGKFVSEGGDFSVKG------------VLDRFSFETVLHALERATAIRTLAEPTLT 278
             +FGG   +      V G            +      +  L+A   A  +R ++ P + 
Sbjct: 692 DTNFGGLASTAPTSSGVSGSPGAAAGISFGTLSSNIKLDLRLNAAVSAGLVRIVSTPRVA 751

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            ++ +SA  T G Q  Y   +S++        +  + L  TP +   G + ++I  +   
Sbjct: 752 TLNHKSAKITQGQQIPY--TASTSDKIETKFVEAALALEVTPHINPNGTVVMKIDAKNDS 809

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           P    + G+ P+   ++A T + L  G T V+ G+  +      +G+P L+ +P LG LF
Sbjct: 810 PG---STGNPPAINKKQATTEMMLRDGETTVIGGIFVESESNNDDGVPFLADVPWLGGLF 866

Query: 399 RNSRFNREETEIFIAATPFLV 419
           +++   R   E+ I  TP ++
Sbjct: 867 KSNETKRNRNELLIFITPRII 887


>gi|172059128|ref|YP_001806780.1| general secretion pathway protein D [Burkholderia ambifaria MC40-6]
 gi|171991645|gb|ACB62564.1| general secretion pathway protein D [Burkholderia ambifaria MC40-6]
          Length = 771

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 110/310 (35%), Gaps = 50/310 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+ A   QV ++  I E+       +G Q  +         + A   G    + 
Sbjct: 392 RSVIDQLD-ARRAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLAPTAGTGLGNS 450

Query: 242 GGDFSVKGVLDRFSFETVLHALERA-------------------------TAIRTLAEPT 276
             + +  G          L  L +                          +    L+ P 
Sbjct: 451 IVNLTSGGTAATTGLAANLAGLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPN 510

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G      T S S   +  T          D G+ LH  P +   G +
Sbjct: 511 LITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGIL 570

Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            L++ TE S  V G  NA   P++  R   +T+   +G  IVL GL++D+ Q     +PL
Sbjct: 571 KLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPL 630

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  IP +G LFR+    R++T + +   P ++               S    A+    NR
Sbjct: 631 LGDIPWIGQLFRSESKQRQKTNLMVFLRPVII---------------SDRSTAQEVTANR 675

Query: 448 VNKIYGPKEA 457
            + I G   A
Sbjct: 676 YDYIQGVTGA 685


>gi|269103695|ref|ZP_06156392.1| putative type II secretory pathway component EpsD [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163593|gb|EEZ42089.1| putative type II secretory pathway component EpsD [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 579

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 121/323 (37%), Gaps = 47/323 (14%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEV 205
           G  ++   S+  V ++    + S          +K   +++ L+I    QV ++  I EV
Sbjct: 204 GQAKSASSSKNEVSINADKGTNSLVISAPPDLMRKLKDIISQLDIR-RAQVHIEAMIVEV 262

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------------------ 241
           +       G Q            +     G   V++                        
Sbjct: 263 QEGDGLNFGVQWGSEDGGIIQYGNSPVGIGSYMVAKKEAEDQTKVETRYDSDGKPYTYET 322

Query: 242 -------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                        GG       +    +  +++A+        L+ P++T +  Q A  +
Sbjct: 323 KESGDYSSLAKLLGGVNGTAVAIAMGDWTALVNAVRTNRNANVLSTPSITVLDNQEAELS 382

Query: 289 SGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            G +   +T S+S+       T+V   D G+ L  TP +     + L I+  VS+     
Sbjct: 383 VGQEVPVQTGSTSSSNNDNPFTTVERKDVGIQLTVTPQINEGDSVKLDIKQVVSQVADAQ 442

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            A D+  +  R+ +T V +  G  I L G++++   + +  +P+L  IP+LG+LFR++  
Sbjct: 443 GAVDI-RFDKRELNTAVLVKDGSMIALGGMMQEKALESESKVPILGDIPVLGSLFRSTNN 501

Query: 404 NREETEIFIAATPFLVKPVAMRD 426
              +T + I   P +++     D
Sbjct: 502 ETVKTNLLIFIKPTIIRDGMTAD 524


>gi|70730124|ref|YP_259863.1| general secretion pathway protein D [Pseudomonas fluorescens Pf-5]
 gi|68344423|gb|AAY92029.1| general secretion pathway protein D [Pseudomonas fluorescens Pf-5]
          Length = 794

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 117/291 (40%), Gaps = 30/291 (10%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++ L+     QV ++  I EV  D   + G Q  
Sbjct: 438 QADATTNTLLISAPDPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDASEFGVQWQ 494

Query: 219 I----------------TGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETV 259
                            +G    P+   + D   K ++ G   G   + G+      + +
Sbjct: 495 AGNLGGHGGFGGVNLGGSGLVGTPASKTSIDVLPKGLNVGVVNGTVDIPGIGKVLDLKVL 554

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHD 311
             AL+       L+ P L  +  ++AS   G    + T S  TG          +V   +
Sbjct: 555 ARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREE 614

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            G+ L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL 
Sbjct: 615 VGLKLNVRPQISEGGTVKLDIYQEVSSVDQRASVDAGTVTNKRAIDTSILLDDGQIMVLG 674

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           GLL+D   Q  + +P LS IP LG LFRN + +  +T + +   P++++  
Sbjct: 675 GLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYIIRDS 725


>gi|260718933|ref|YP_003225074.1| type II secretion protein EtpD [Escherichia coli O103:H2 str.
           12009]
 gi|257762444|dbj|BAI33940.1| type II secretion protein EtpD [Escherichia coli O103:H2 str.
           12009]
          Length = 656

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 121/335 (36%), Gaps = 43/335 (12%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192
           VL G+   I++  +    +E          +  +++             + V++ L+I  
Sbjct: 285 VLTGISSNIENDAKKSSSTEALRKGVTIKSHEQTNALILTGAPDVIRDLENVISQLDIRR 344

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------ 246
             QV ++  IAEV+      +G Q     S      S          +   D S      
Sbjct: 345 P-QVLVEAIIAEVQDADGLNLGIQWVNKHSGVTQFTSTGLPITTMVQTRQSDISDSDQSN 403

Query: 247 ----VKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---- 295
                 G+   F   ++  +L AL  ++    LA P++  +    A+F  G +       
Sbjct: 404 TLSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGS 463

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYR 352
           +T S      +V     G+ L   P +     + L I+ EVS      +        ++ 
Sbjct: 464 QTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFN 523

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R     + + +G T+V+ GLL   I+  +  +PLL  IP+LG LF +   +  +  + +
Sbjct: 524 TRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFSSKSEHAAKRNLML 583

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
              P +++           D +      K   FN+
Sbjct: 584 FIRPTIIR---------ERDGFRHASAEKYLSFNQ 609


>gi|183179752|ref|ZP_02957963.1| fimbrial assembly protein [Vibrio cholerae MZO-3]
 gi|183013163|gb|EDT88463.1| fimbrial assembly protein [Vibrio cholerae MZO-3]
          Length = 377

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  V+   L+++G +  +  ++   S              
Sbjct: 114 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGL 172

Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +      +     F V  +      +  L AL+  +    ++ P L
Sbjct: 173 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 232

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A    G +  Y   SSS+GA++V      + L  TP +    R+ L +     
Sbjct: 233 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 291

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LG
Sbjct: 292 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 351

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR +     ++E+ I  TP +V
Sbjct: 352 ALFRRTYEQMGKSELLIFVTPKVV 375


>gi|17547690|ref|NP_521092.1| fimbrial type-4 assembly signal peptide protein [Ralstonia
           solanacearum GMI1000]
 gi|17429995|emb|CAD16680.1| probable fimbrial type-4 assembly signal peptide protein [Ralstonia
           solanacearum GMI1000]
          Length = 714

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-----------------------SF 230
            QV ++  I E      + +G +      ++G                          S 
Sbjct: 462 RQVMIEARIVEADDTFSRNLGAKLGFAAKTNGAGYGNTYSNVVSPVTKDATWDNSAAVSL 521

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 522 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 581

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV+     + L  TP +   G + L +  +V++  +G    +  +
Sbjct: 582 TEVPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNVFLDV--DVNKDSLGTQTTNGFA 638

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++    + TE+
Sbjct: 639 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 698

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 699 LVFLTPRVL 707


>gi|330447077|ref|ZP_08310727.1| type IV pilus secretin PilQ family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491268|dbj|GAA05224.1| type IV pilus secretin PilQ family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 569

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 107/264 (40%), Gaps = 25/264 (9%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------GSSSGPSKS 229
           SS K ++  L+I    QV ++  I  +    + ++G +  ++         GS  G   S
Sbjct: 306 SSIKNIVESLDIP-VKQVQIEARIVTINEGDIDELGVRWGVSKVDGDTTIGGSIEGNLAS 364

Query: 230 FAADFGGKFVSEGGDFSVK------------GVLDRFSFETVLHALERATAIRTLAEPTL 277
                    V +  + ++               L     +  L AL+       ++ P L
Sbjct: 365 SGLLDDDATVDDFLNVNLGASAGAASIAFQVAKLGNILLDLELSALQTENKAEIISSPRL 424

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + ++A    G +  Y   SSS GATSV+     + L  TP +    ++ L ++    
Sbjct: 425 MTTNKKTAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVTPQITPDDKLVLDLEVTQD 483

Query: 338 EP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G   S   ++  T V + +G T+VL G+ +  +  +   +P+L  IP+LG
Sbjct: 484 NKGEDVPTGEGTAVSIDTQRIGTQVLVNNGETVVLGGIYQHSMTNVTRKVPVLGDIPVLG 543

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR+      + E+ I  TP +V
Sbjct: 544 ALFRHKMEQMGKRELLIFVTPKIV 567


>gi|288942750|ref|YP_003444990.1| type IV pilus secretin PilQ [Allochromatium vinosum DSM 180]
 gi|288898122|gb|ADC63958.1| type IV pilus secretin PilQ [Allochromatium vinosum DSM 180]
          Length = 787

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 108/291 (37%), Gaps = 49/291 (16%)

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------ 224
           A    ++V+NLL++A   QV ++  +        + +G +  ++GS              
Sbjct: 493 ALEEVRRVVNLLDVA-VRQVMIESRVVIANNSFARDLGVRFGVSGSMGKVGDNEVLIGGG 551

Query: 225 ---------------GPSKSFAADFGGKFVSEGGDFSVK--------------------G 249
                          G + S    +      + G+ ++                     G
Sbjct: 552 QNGYLAVGDYDSGPFGLNASTGTPYNSTLTDDAGNATLITNLPATTIQDAASGSIDFLIG 611

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            +  +  +  L A++R      ++ P +       A+   G +  Y+  S   G TS+  
Sbjct: 612 KVGSYLIQLELSAMQREGRGEIISSPRVITADKNKATIKVGSEIPYQEQSGQ-GNTSIAF 670

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            +  + L  TP +    RI + ++     P    +  + P    R   T V + +G T+V
Sbjct: 671 KEAVLQLDVTPQITPDDRIIMDLEVRKDRPDWSRSINNTPPIDTRSVKTNVVIDNGETVV 730

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L G+ + +    KE +P L  +P+LG LF+        TE+ I  TP ++K
Sbjct: 731 LGGVFEREKTFSKEQVPWLGDVPVLGRLFKQEARQDSNTELLIFVTPKILK 781


>gi|241767965|ref|ZP_04765503.1| type II and III secretion system protein [Acidovorax delafieldii
           2AN]
 gi|241360839|gb|EER57693.1| type II and III secretion system protein [Acidovorax delafieldii
           2AN]
          Length = 381

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/281 (21%), Positives = 108/281 (38%), Gaps = 37/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+     QV ++  I EV  + L + G Q      S G     A          
Sbjct: 78  RAVIDKLD-GRRAQVLVESLIVEVSTNKLAEFGIQWQSVLGSKGDGMVGAIGTNSGLAGA 136

Query: 242 GGDFSVKGVL--------------------------DRFSFETVLHALERATAIRTLAEP 275
                  G+                            ++    + + L+ +     L+ P
Sbjct: 137 NIIGLAAGIAQGGTAAATAAGKLGGGLNVALAPRVNGQYYLGALANFLQNSGDANVLSTP 196

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPG 326
            L  +  + A    G    + T S +            T+V   D G++L   P +   G
Sbjct: 197 NLMTLDNEEAKIIIGSNVPFVTGSYANTGGNSGAVNPFTTVERKDVGLMLKVRPQINENG 256

Query: 327 RIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            + L I  EVS+     V+  + P+   R  ++ V +  G  IV+ GLL+D   Q ++ +
Sbjct: 257 TVKLAIYQEVSKIDEATVSNANGPTTSKRSIESNVLVEDGNIIVIGGLLEDSYSQGEDKV 316

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           PL+  IP+LG LFR+   +R++T + +   P +V+  A  D
Sbjct: 317 PLMGDIPLLGNLFRSENRSRKKTNLMVFLRPVVVRDAAASD 357


>gi|238025716|ref|YP_002909947.1| general secretory pathway protein D [Burkholderia glumae BGR1]
 gi|237874910|gb|ACR27243.1| General secretory pathway protein D [Burkholderia glumae BGR1]
          Length = 765

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/315 (20%), Positives = 115/315 (36%), Gaps = 55/315 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+     QV ++  I E+  +    +G Q  +  ++     S   +  G   + 
Sbjct: 384 RAVVDQLDER-RAQVYIEALIVELNSNTSANLGIQWQVANNALYAGSSLGTNVSGLGNTI 442

Query: 242 GGDFS----------------------------VKGVLDRFSFETVLHALERATAIRTLA 273
            G  +                            +K +        +L A   ++    L+
Sbjct: 443 TGLTAAAAAGSAGGANGGAAAAASLTPGLNIGWLKNMFGITGLGALLQAFSGSSDANVLS 502

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSP 325
            P L  +  + A    G      T S        SS    +    D G+ LH  P +   
Sbjct: 503 TPNLVTLDNEEAKIVVGQNVPIATGSYSNLTSGNSSNAFNTFDRQDVGLTLHVKPQITEG 562

Query: 326 GRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           G + L+I TE S  V    +     +P++  R   +TV   +G  IVL GL++D+ Q   
Sbjct: 563 GILKLQIYTEDSAVVPSTTSSTAVGVPTFSKRSIQSTVLCDNGEIIVLGGLMQDNYQVGN 622

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
             +PLL  IP +G LFR+    R++T + +   P ++   A                 +A
Sbjct: 623 NKVPLLGDIPWIGQLFRSEGKQRQKTNLMVFLRPVILTDHA---------------TTQA 667

Query: 443 FFFNRVNKIYGPKEA 457
              NR + I G + A
Sbjct: 668 ITANRYDYIQGVQGA 682


>gi|148976513|ref|ZP_01813209.1| Type II secretory pathway, component EpsD [Vibrionales bacterium
           SWAT-3]
 gi|145964089|gb|EDK29346.1| Type II secretory pathway, component EpsD [Vibrionales bacterium
           SWAT-3]
          Length = 674

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 112/292 (38%), Gaps = 46/292 (15%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA 231
           ++ + V+  L+I    QV ++  I E+       +G Q         I  S++G S    
Sbjct: 329 NALQDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAMIQYSNTGASIGGV 387

Query: 232 --------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETV 259
                                            D+     +  G       +    +  +
Sbjct: 388 MVGLEEAKDTETTTAVYDKNGKFLGNETTTEQGDYSTLASALSGVNGAAMSVVMGDWTAL 447

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGV 314
           + A+   +    L+ P++T +    ASF  G +    T S++  +      +V   + G+
Sbjct: 448 ISAVATDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSSNDNPFQTVERKEVGI 507

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L   P +     + L+I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+
Sbjct: 508 KLKVVPQINEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLI 566

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +   + +  +P L  IP+LG LF+++    E+  + +   P +++     D
Sbjct: 567 DERALESESKVPFLGDIPVLGHLFKSTSTQVEKKNLMVFIKPTIIRDGMTAD 618


>gi|78484984|ref|YP_390909.1| type II and III secretion system protein [Thiomicrospira crunogena
           XCL-2]
 gi|78363270|gb|ABB41235.1| Type II secretion pathway protein D homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 569

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 117/265 (44%), Gaps = 28/265 (10%)

Query: 182 KKVMNLLNI---AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++V N L+        QV ++ T+ EV      Q G   S   S+SG S   +    G  
Sbjct: 284 QQVKNYLDSSLNRTNKQVLIEATVVEVELSDQYQAGVDWSAVNSNSGGSSDISQSLLGTN 343

Query: 239 VSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           +S+  +FS+    +  ++F   +  L++    + L+ P + A++ Q+A        +Y T
Sbjct: 344 LSKDPNFSINLSSIGTWNFNIGIKMLQQFGDAKVLSSPKIMAMNNQAALLKVVNNEVYFT 403

Query: 298 V------------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           V              +T  T+V T   G ++H TP + S   I L I+  +S  V  VN 
Sbjct: 404 VEVNRESATASSAGVTTYETTVHTVPVGFMMHVTPFI-SDDEISLNIRPTLSRIVGYVND 462

Query: 346 GD-----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            +           +P  + R+ D+ + L +  T ++ GL++D     ++G+P LS +P +
Sbjct: 463 PNPDLARENIESKVPIIQEREMDSVLRLRNRQTAIIGGLIQDTHDNQRQGVPGLSDLPWI 522

Query: 395 GALFRNSRFNREETEIFIAATPFLV 419
           G LF        ++E+ I   P +V
Sbjct: 523 GDLFSYRDDTVSKSELIIFIRPIIV 547


>gi|254516135|ref|ZP_05128195.1| type IV pilus secretin PilQ [gamma proteobacterium NOR5-3]
 gi|219675857|gb|EED32223.1| type IV pilus secretin PilQ [gamma proteobacterium NOR5-3]
          Length = 732

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 110/273 (40%), Gaps = 34/273 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKF 238
           +++++L++I    QV ++  I   + D+ K++G Q     + G ++G   S   D     
Sbjct: 459 RELIDLVDIPI-RQVMIESRIVIAQSDLEKELGIQWGGGYLDGDANGNILSVTGDAANAV 517

Query: 239 V--------------------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                                      S    F+V    +       L ALE A     +
Sbjct: 518 NLNNSVINGTQPDLSYPGALLVDLGSGSATSGFAVGFTSNSLYLTAELSALEAAGKSEVV 577

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           ++P +     Q A+  SG +  ++  ++S GAT+V   +  + L  TP +    RI L +
Sbjct: 578 SQPKVITGDKQPATIKSGTEIPFQQAAAS-GATAVQFKEAVLKLDVTPNITPDDRILLDL 636

Query: 333 QTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                     V     G +P+    +  T V + +G T+VL G+ + +  +    +P   
Sbjct: 637 VINQDSVGDLVPSGQGGLIPAIDTTQLTTQVLVGNGETVVLGGVFRTENLETTSKVPFFG 696

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +P +GALFRN    R +TE  I  TP ++   
Sbjct: 697 DLPYVGALFRNESNQRTKTETLIFITPRILADT 729


>gi|297537658|ref|YP_003673427.1| type II and III secretion system protein [Methylotenera sp. 301]
 gi|297257005|gb|ADI28850.1| type II and III secretion system protein [Methylotenera sp. 301]
          Length = 838

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 160/454 (35%), Gaps = 79/454 (17%)

Query: 53  GLNKVIILQVPVDVQD-VLVSDPTKADV------------VVHSPRTMYLFGKNVGQANV 99
           G+N ++   V  D++  + V D +  D              V +  T++++         
Sbjct: 220 GINVLLDRDVKNDLKTTIFVKDASVEDTIGLILMQNQLEEKVLNENTVFIYP----STPA 275

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            +  +    +    + +  D   ++  ++  +   +I +   ++++V+        D+  
Sbjct: 276 KIKEYQELVIRTFHL-VNADAKQMQTMIKTMLKTKDIFIHEKTNSLVMR-------DTPE 327

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217
           AV+L+E  ++    N                    +V L+V + EV    + +IG Q   
Sbjct: 328 AVQLAEKLVAAQDLND------------------PEVMLEVEVLEVLHSKMTEIGVQWPT 369

Query: 218 --SITGSSSGPSKSFAADFGGKF----------VSEGGDFSVKGVLDRFSFETVLHALER 265
              ++ + +  + +     GG              EG        +       +L   + 
Sbjct: 370 QFGLSVTDAPSTPTTTVGLGGAIQTTTPPPVPLTLEGLRNITGSNIKVTPLSLLLTMKKD 429

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHF 318
                 LA P +     + A    G +    T S +  +T       SV   D G+ L  
Sbjct: 430 VGDTNLLASPRIRVRQHEKAKIMIGDRVPVITNSVTPVSTGTPVVTGSVQYLDVGLKLEV 489

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR----VRKADTTVELPSGGTIVLAGLL 374
            P +   G + ++   EVS     V      +       R A T + L  G T VL GL+
Sbjct: 490 EPDIHIDGEVAIKTYLEVSNIANQVTNATSGTIAYQIGTRNASTVLRLKDGETQVLGGLI 549

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            D+ ++    +P L  +PILG LF +   ++ +TEI +  TP +++ +           +
Sbjct: 550 SDEDRKSASKVPGLGDLPILGRLFSSHNNSKTKTEIILFITPHIIRNI-----------H 598

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
               D   F+      ++    + +  G    G+
Sbjct: 599 QPAADLSEFWSGTDATLHSKPMSLQPVGVAKTGS 632


>gi|310777966|ref|YP_003966299.1| type II and III secretion system protein [Ilyobacter polytropus DSM
           2926]
 gi|309747289|gb|ADO81951.1| type II and III secretion system protein [Ilyobacter polytropus DSM
           2926]
          Length = 554

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 107/252 (42%), Gaps = 16/252 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---------SGPSKSFAA 232
           K +M+ +++    QV ++  I EV+    +  G       ++         SG   S   
Sbjct: 239 KNIMDKIDVPD-LQVVIEARILEVQEGTGRDWGMSWGYNSNNLTEADSSDGSGGYLSGTD 297

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            +        G     G+L    F  V   +        LA+P +T ++G+ A+     +
Sbjct: 298 SYYDASSLSDGITLGLGLLGSDQFSAVYRNVVEDNTTEILAKPVITTLNGKKATIELTEE 357

Query: 293 HLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             Y      + S    +TS    D G+ L  TP +   G I + +  E+SE V G     
Sbjct: 358 VPYKELEYVSDSGDATSTSYEFKDVGITLEVTPVITDDGMIKIEVTPEISE-VTGYTDDG 416

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P    RK +T V + +G T+ + GL+KD         P LSKIPILG LF++S   + +
Sbjct: 417 VPYVSSRKVETNVIVRNGQTLAIGGLIKDTKSTTDTKDPYLSKIPILGYLFKSSSNEKSK 476

Query: 408 TEIFIAATPFLV 419
           T + I  TP ++
Sbjct: 477 TNLMIFITPKII 488


>gi|86146572|ref|ZP_01064894.1| Type II secretory pathway, component EpsD [Vibrio sp. MED222]
 gi|85835629|gb|EAQ53765.1| Type II secretory pathway, component EpsD [Vibrio sp. MED222]
          Length = 674

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 112/292 (38%), Gaps = 46/292 (15%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA 231
           ++ + V+  L+I    QV ++  I E+       +G Q         I  S++G S    
Sbjct: 329 NALQDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAMIQYSNTGASIGGV 387

Query: 232 --------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETV 259
                                            D+     +  G       +    +  +
Sbjct: 388 MVGLEEAKDSTTTKAVYDKDNNFLRNETTTEKGDYSTLASALSGVNGAAMSVVMGDWTAL 447

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGV 314
           + A+   +    L+ P++T +    ASF  G +    T S++  +      +V   + G+
Sbjct: 448 ISAVATDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSSNDNPFQTVERKEVGI 507

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L   P +     + L+I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+
Sbjct: 508 KLKVVPQINEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLI 566

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +   + +  +P L  IP+LG LF+++    E+  + +   P +++     D
Sbjct: 567 DERALESESKVPFLGDIPVLGHLFKSTSTQVEKKNLMVFIKPTIIRDGMTAD 618


>gi|84386329|ref|ZP_00989357.1| Type II secretory pathway, component EpsD [Vibrio splendidus 12B01]
 gi|84378753|gb|EAP95608.1| Type II secretory pathway, component EpsD [Vibrio splendidus 12B01]
          Length = 674

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 112/292 (38%), Gaps = 46/292 (15%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA 231
           ++ + V+  L+I    QV ++  I E+       +G Q         I  S++G S    
Sbjct: 329 NALQDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAMIQYSNTGASIGGV 387

Query: 232 --------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETV 259
                                            D+     +  G       +    +  +
Sbjct: 388 MVGLEEAKDSETTTAVYDSDGKFLRNETTTEEGDYSTLASALSGVNGAAMSVVMGDWTAL 447

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGV 314
           + A+   +    L+ P++T +    ASF  G +    T S++  +      +V   + G+
Sbjct: 448 ISAVATDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSSNDNPFQTVERKEVGI 507

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L   P +     + L+I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+
Sbjct: 508 KLKVVPQINEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLI 566

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +   + +  +P L  IP+LG LF+++    E+  + +   P +++     D
Sbjct: 567 DERALESESKVPFLGDIPVLGHLFKSTSTQVEKKNLMVFIKPTIIRDGMTAD 618


>gi|254490277|ref|ZP_05103466.1| type IV pilus secretin PilQ subfamily, putative [Methylophaga
           thiooxidans DMS010]
 gi|224464410|gb|EEF80670.1| type IV pilus secretin PilQ subfamily, putative [Methylophaga
           thiooxydans DMS010]
          Length = 672

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 107/266 (40%), Gaps = 31/266 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++V++ L+     QV ++  I     D  K++G +   +  S+      +    G   + 
Sbjct: 406 RQVIDELDKP-VRQVLIESRIVIANNDFNKELGVRFGTSAQSNTLGAGSSGSLTGLSTNP 464

Query: 242 GGD---------------------------FSVKGVLDRFSFETVLHALERATAIRTLAE 274
             D                            ++  +      E  L A++       ++ 
Sbjct: 465 NNDDQIRANSVVGNDLNVNLPVSNPSGSIGLALAKLPLGMILELELSAMQAEGKGEVISS 524

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +   + Q A+   G +  Y+  +SS GAT+V+  +  + L  TP +    RI + +  
Sbjct: 525 PRVITSNQQQATIEQGTEIPYQEATSS-GATNVSFKEAVLKLDVTPQITPDDRIVMDL-- 581

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           EVS+  +G     +PS   R   T V + +G T+VL G+ +       E +P    +P +
Sbjct: 582 EVSKDEVGEVFLGVPSIDTRSVKTQVLVDNGETVVLGGIYEQSTNDNVERVPFFGDLPYV 641

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G LF+N+     + E+ +  TP +VK
Sbjct: 642 GFLFKNTFKEDRKRELLVFVTPKIVK 667


>gi|330958318|gb|EGH58578.1| general secretion pathway protein D [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 784

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/329 (22%), Positives = 123/329 (37%), Gaps = 31/329 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 434 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDASQFGVQWQ 490

Query: 219 ITGSSSGPSKSFAADF-----------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261
               S                            G       G  ++ G+ +    + +  
Sbjct: 491 TGNLSGNGGFGGVNLGGSGLNSNGGTSIDVLPQGLNVGVVRGAVTIPGIGEVLDLKVLAR 550

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T S  TG          +V   + G
Sbjct: 551 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 610

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 611 LKLNVRPQISEGGTVKLDIYQEVSSVDQRASLEAGTVTNKRAIDTSILLDDGQIMVLGGL 670

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDD 432
           L+D   Q    +P LS IP+LG LFRN   +  +T + +   P++++   A R ++   +
Sbjct: 671 LQDGYNQSNNAVPWLSNIPLLGVLFRNEARSTSKTNLMVFLRPYIIRDSGAGRSITL--N 728

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
            Y     A+       N      +A ++ 
Sbjct: 729 RYDFMRRAQGNLQPERNWALPDTQAPQLP 757


>gi|261211295|ref|ZP_05925584.1| type II secretory pathway component PulD [Vibrio sp. RC341]
 gi|260839796|gb|EEX66407.1| type II secretory pathway component PulD [Vibrio sp. RC341]
          Length = 675

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 134/375 (35%), Gaps = 72/375 (19%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181
           +   L+R I   ++ +    +  V++      +D    ++ +S+   ++ G  Q   S  
Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSDNLQAEKGTGQQTTSKR 304

Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216
            +VM       N L +                      QV ++  I E+       +G Q
Sbjct: 305 NEVMIAAHSDTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364

Query: 217 HS-------ITGSSSGPS---------------------------------KSFAADFGG 236
                    I   ++G S                                  +   D+  
Sbjct: 365 WGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKKPIRNSDTGEIKYYEETTTKGDYST 424

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              +  G       +    +  ++ A+   +    L+ P++T +    ASF  G +    
Sbjct: 425 LASALSGLQGAAVSIALGDWTALISAVSNDSKSNILSSPSITVMDNGEASFIVGEEVPVI 484

Query: 297 TVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           T S++         +V   + G+ L   P +     + L+I+ EVS  V+G N      +
Sbjct: 485 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSN-VLGANGAVDVRF 543

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + 
Sbjct: 544 AKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLM 603

Query: 412 IAATPFLVKPVAMRD 426
           +   P +++     D
Sbjct: 604 VFIKPTIIRDGMTAD 618


>gi|323527881|ref|YP_004230034.1| general secretion pathway protein D [Burkholderia sp. CCGE1001]
 gi|323384883|gb|ADX56974.1| general secretion pathway protein D [Burkholderia sp. CCGE1001]
          Length = 785

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/313 (21%), Positives = 115/313 (36%), Gaps = 53/313 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+ A   QV ++  I E+  +    +G Q  +  +S     + A       ++ 
Sbjct: 396 RAVIDQLD-ARRAQVYIEALIVELNSNTSGNLGIQWQVANNSVFAGTNLATGSSNSIINL 454

Query: 242 GGDFS-------------------------VKGVLDRFSFETVLHALERATAIRTLAEPT 276
               +                         +  +        +L AL +      L+ P 
Sbjct: 455 TAAAAAAGTTGGLATALGTQGIQQGLNIGWIHNIFGVQGLGALLQALSQTADANVLSTPN 514

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G     +T S S            +    D G+ LH  P +   G +
Sbjct: 515 LITLDNEEAKIVVGTNVPIQTGSYSNLTSGNASSAFNTYDRVDVGLTLHVKPQITDGGIL 574

Query: 329 GLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L++ TE S  V G          P +  R   +TV   +G  IVL GL++D+ Q     
Sbjct: 575 KLQLYTEDSAIVNGTTNAATNPAGPQFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSK 634

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +PLL  IP +G LFR+ + NR +T + +   P ++               S  D A+A  
Sbjct: 635 VPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVII---------------SDRDTAQAVT 679

Query: 445 FNRVNKIYGPKEA 457
            NR + I G + A
Sbjct: 680 SNRYDYIQGVQGA 692


>gi|145588279|ref|YP_001154876.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046685|gb|ABP33312.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 353

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/340 (17%), Positives = 129/340 (37%), Gaps = 35/340 (10%)

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           +  K +G  N +L      + +   I ++ +    +  L   +A   +R+    D   + 
Sbjct: 39  VLAK-LGHTNFLL-----SESIKGKISVDLNNTPWQTALHSILASRGLRLVRNGDIYWI- 91

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
                                 +   +Y    S       +I    Q+ ++  I E    
Sbjct: 92  ----------------GPHAEIAAFQKYRREDSALPFGGDHINSPSQILIEARIVEADER 135

Query: 209 ILKQIGF----QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL----DRFSFETVL 260
             +++G     Q ++ GS +    S   D GG  ++     +V   L         +  L
Sbjct: 136 FARELGVKIGQQANLAGSRTDKKISANLDLGGAGLNGFNPATVAATLLSKDASRLLQMEL 195

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            ALE     + L+ P +       A+   G +  Y+T S +   + +      + L   P
Sbjct: 196 SALESEGQGKILSNPRIMTGDQVKATIEQGTELPYQTTSQN--GSKLQFRKANLRLEVLP 253

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            +   G+I + +   +++  IG+      +   +   + V + +GGT ++ G+ +   ++
Sbjct: 254 KIHPDGKISMLV--GINKDTIGMKTEQGYAIDTKSLSSEVTVENGGTAIIGGIYQTTERE 311

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  IPLL  IP+ G LFR+    +++TE+ +  TP ++ 
Sbjct: 312 DEVKIPLLGDIPLFGHLFRHKSKLKDKTELLVFLTPTVLD 351


>gi|86147328|ref|ZP_01065642.1| fimbrial assembly protein [Vibrio sp. MED222]
 gi|85834893|gb|EAQ53037.1| fimbrial assembly protein [Vibrio sp. MED222]
          Length = 564

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 108/267 (40%), Gaps = 31/267 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------------- 219
           + ++  L+I    QV ++  I  V    L ++G +  +                      
Sbjct: 298 RGIIESLDIP-VKQVQIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQIT 356

Query: 220 ----TGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                G +S        + G    S     F V  +      +  L AL++ +    ++ 
Sbjct: 357 PYDDNGGNSAIDDFLNVNLGATSPSASSIAFQVAKLGSDTLLDLELSALQQESKAEIISS 416

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L   + + A    G +  Y   SSS+GATSV      + L  TP +    R+ L +  
Sbjct: 417 PRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSV 475

Query: 335 EVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
               P  V+    G+  +   ++  T V + +G T+VL G+ +  +    + +PLL  +P
Sbjct: 476 TQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSQVDKVPLLGDLP 535

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
           +LGALFR S  N  ++E+ I  TP +V
Sbjct: 536 VLGALFRRSYENVGKSELLIFVTPKVV 562


>gi|152986567|ref|YP_001350166.1| putative type II secretion system protein [Pseudomonas aeruginosa
           PA7]
 gi|150961725|gb|ABR83750.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
          Length = 803

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 133/328 (40%), Gaps = 29/328 (8%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++LL+     QV ++  I EV  D   + G Q  
Sbjct: 449 QADATTNTLLISAPEPLYRN--LREVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQ 505

Query: 219 ITG--------------SSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETVLH 261
                            S+   +   + D   K ++ G   G   + G+      + +  
Sbjct: 506 AGNLGGNGVIGGVNFGQSALNTAARNSIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLAR 565

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
           AL+       L+ P L  +  +SAS   G    + +         +S+    ++   D G
Sbjct: 566 ALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVG 625

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L +  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 626 LKLNIRPQISEGGTVKLDVYQEVSSVDERASTVAGVVTNKRAIDTSILLDDGQIMVLGGL 685

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L+D++Q   +G+P LS +P +G+LFR  + +R +T + +   P++V+  A    S   + 
Sbjct: 686 LQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMVFLRPYIVRDAAAG-RSITLNR 744

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           Y     A+     R +   G  +A  + 
Sbjct: 745 YDFIRRAQQRVQPRHDWSVGDMQAPVLP 772


>gi|218708199|ref|YP_002415820.1| type II secretory pathway subunit EpsD [Vibrio splendidus LGP32]
 gi|218321218|emb|CAV17168.1| Type II secretory pathway, component EpsD [Vibrio splendidus LGP32]
          Length = 674

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 112/292 (38%), Gaps = 46/292 (15%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA 231
           ++ + V+  L+I    QV ++  I E+       +G Q         I  S++G S    
Sbjct: 329 NALQDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAMIQYSNTGASIGGV 387

Query: 232 --------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETV 259
                                            D+     +  G       +    +  +
Sbjct: 388 MVGLEEAKDKTVDRVVTPSDGSKPYTVKETEKGDYSTLASALSGVNGAAMSVVMGDWTAL 447

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGV 314
           + A+   +    L+ P++T +    ASF  G +    T S++  +      +V   + G+
Sbjct: 448 ISAVATDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSSNDNPFQTVERKEVGI 507

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L   P +     + L+I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+
Sbjct: 508 KLKVVPQINEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLI 566

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +   + +  +P L  IP+LG LF+++    E+  + +   P +++     D
Sbjct: 567 DERALESESKVPFLGDIPVLGHLFKSTSTQVEKKNLMVFIKPTIIRDGMTAD 618


>gi|83748197|ref|ZP_00945224.1| PilQ [Ralstonia solanacearum UW551]
 gi|207744528|ref|YP_002260920.1| fimbrial type-4 assembly protein [Ralstonia solanacearum IPO1609]
 gi|83725165|gb|EAP72316.1| PilQ [Ralstonia solanacearum UW551]
 gi|206595934|emb|CAQ62861.1| fimbrial type-4 assembly protein [Ralstonia solanacearum IPO1609]
          Length = 713

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-----------------------SF 230
            QV ++  I E      + +G +      S+G                          S 
Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFAAKSNGSGIGNTYSNVVSPVTTNGTWDNSSALSL 520

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV      + L  TP +   G + L +  +V++  +G    +  +
Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLDV--DVNKDSVGTQTTNGFA 637

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++    + TE+
Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 698 LVFLTPRVL 706


>gi|326315687|ref|YP_004233359.1| general secretion pathway protein D [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372523|gb|ADX44792.1| general secretion pathway protein D [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 804

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 110/285 (38%), Gaps = 41/285 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+     QV ++  I EV  + + + G Q      + G              + 
Sbjct: 428 RAVIDQLD-GRRAQVLVESLIVEVSANKVAEFGIQWQGVMGNYGNGTIGVIGTNSSASTT 486

Query: 242 GGDFSV-------------------------------KGVLDRFSFETVLHALERATAIR 270
           GG+ ++                                 +   +    + + LE      
Sbjct: 487 GGNANILNLALAAATGNATSIASSASGLGKGLNVAIAPRINGNYYLGALANFLENTGDAN 546

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTV 322
            L+ P L  +  + A    G    + T S +           T+V   D G++L   P +
Sbjct: 547 VLSTPNLMTLDNEEAQIIIGNNVPFVTGSYANTTGSSTVNPFTTVERKDVGLMLRVRPQI 606

Query: 323 LSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              G + L +  EVS+   G  NA + P+   R  ++TV +  G  IVL GLL+D     
Sbjct: 607 NENGTVKLSLYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGNVIVLGGLLEDRYSMG 666

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++ +PL+  +P++G LFRN    R++T + +   P +++  A  D
Sbjct: 667 QDKVPLMGDLPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSD 711


>gi|299065464|emb|CBJ36633.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CMR15]
          Length = 714

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 97/249 (38%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-----------------------SF 230
            QV ++  I E      + +G +      S+G                          S 
Sbjct: 462 RQVMIEARIVEADDTFSRNLGAKLGFAAKSNGSGVGNTYSNVVSPVTQNGTWDNSAAVSL 521

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 522 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 581

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV+     + L  TP +   G + L +  +V++  +G    +  +
Sbjct: 582 TEVPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNVFLDV--DVNKDSLGTQTTNGFA 638

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     IPLL  IP+LG LF+++    + TE+
Sbjct: 639 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKIPLLGDIPVLGNLFKSTAKTNDRTEL 698

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 699 LVFLTPRVL 707


>gi|319424897|gb|ADV52971.1| MSHA system outer membrane secretin, MshL [Shewanella putrefaciens
           200]
          Length = 559

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/302 (22%), Positives = 122/302 (40%), Gaps = 22/302 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  ++    + ++ V   +  L             +  +N      + QV L+  I EV 
Sbjct: 241 LTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEVT 300

Query: 207 RDILKQIGFQH-SITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHAL 263
                Q G Q  ++ G     + +F    G  G  V+          +    F T+++ L
Sbjct: 301 LSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINLL 360

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------G 313
           +    +  L+ P +TA + Q A    G    + T  SST   G T VTT          G
Sbjct: 361 DTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSG 420

Query: 314 VVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELPS 364
           + L  TP +   G + L +   V           +   + ++P     +R++DT +   S
Sbjct: 421 IALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAAS 480

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  +V+ GL+K +  ++   +PLL  IP+LG LF+N    +++TE+ I   P +V     
Sbjct: 481 GDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVVDGDTW 540

Query: 425 RD 426
           ++
Sbjct: 541 KN 542


>gi|262166741|ref|ZP_06034478.1| type II secretory pathway component PulD [Vibrio mimicus VM223]
 gi|262026457|gb|EEY45125.1| type II secretory pathway component PulD [Vibrio mimicus VM223]
          Length = 653

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 134/375 (35%), Gaps = 72/375 (19%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181
           +   L+R I   ++ +    +  V++      +D    ++ +SE   ++ G  Q   S  
Sbjct: 223 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQQTTSKR 282

Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216
            +VM       N L +                      QV ++  I E+       +G Q
Sbjct: 283 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 342

Query: 217 HS-------ITGSSSGPS---------------------------------KSFAADFGG 236
                    I   ++G S                                  +   D+  
Sbjct: 343 WGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKRPIRDSNTGAIKYYEETTTKGDYST 402

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              +  G       +    +  +++A+   +    L+ P++T +    ASF  G +    
Sbjct: 403 LASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGEASFIVGEEVPVI 462

Query: 297 TVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           T S++         +V   + G+ L   P +     + L I+ EVS  V+G N      +
Sbjct: 463 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRF 521

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + 
Sbjct: 522 AKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLM 581

Query: 412 IAATPFLVKPVAMRD 426
           +   P +++     D
Sbjct: 582 VFIKPTIIRDGVTAD 596


>gi|146291667|ref|YP_001182091.1| pilus (MSHA type) biogenesis protein MshL [Shewanella putrefaciens
           CN-32]
 gi|145563357|gb|ABP74292.1| pilus (MSHA type) biogenesis protein MshL [Shewanella putrefaciens
           CN-32]
          Length = 558

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 120/295 (40%), Gaps = 22/295 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  ++    + ++ V   +  L             +  +N      + QV L+  I EV 
Sbjct: 240 LTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEVT 299

Query: 207 RDILKQIGFQH-SITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHAL 263
                Q G Q  ++ G     + +F    G  G  V+          +    F T+++ L
Sbjct: 300 LSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINLL 359

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------G 313
           +    +  L+ P +TA + Q A    G    + T  SST   G T VTT          G
Sbjct: 360 DTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSG 419

Query: 314 VVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELPS 364
           + L  TP +   G + L +   V           +   + ++P     +R++DT +   S
Sbjct: 420 IALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAAS 479

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G  +V+ GL+K +  ++   +PLL  IP+LG LF+N    +++TE+ I   P +V
Sbjct: 480 GDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVV 534


>gi|308272100|emb|CBX28708.1| hypothetical protein N47_G40320 [uncultured Desulfobacterium sp.]
          Length = 818

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 106/248 (42%), Gaps = 13/248 (5%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGK 237
           +K+++  L+     QV ++  I E      ++IG   S      SSS    ++  +    
Sbjct: 569 AKEIVKKLDKVTP-QVVIEARIVEATTSFSREIGVIWSADAGPNSSSSLGGTYDLNAAVN 627

Query: 238 FVSEGGDFSVKGV------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           F +   +    G          F     L A+E     + ++ P +  +  + A+   G 
Sbjct: 628 FPTTAANKGTIGFDFARINGSPFLLNAKLEAMEAQGEGKIVSAPKICTLDNKEATIKQGL 687

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           ++ Y  +  ++G T+    D  + L   P V    RI + I+ +     +G+   D  S+
Sbjct: 688 RYPYNKL-DTSGNTTTVFEDVDLELKVKPHVTPDNRISMLIKIKKR--DLGIFINDQQSF 744

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++A+T + +  G T+V+ G++K         IP LS+IPILG  F++      + E+ 
Sbjct: 745 TNKEAETELLVNDGDTVVIGGIIKTSKNTGGSLIPGLSRIPILGWFFKSDTKTDNKEELL 804

Query: 412 IAATPFLV 419
           I  TP +V
Sbjct: 805 IFITPKIV 812


>gi|21230145|ref|NP_636062.1| general secretion pathway protein D [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769864|ref|YP_244626.1| general secretion pathway protein D [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|129748|sp|P29041|GSPD_XANCP RecName: Full=General secretion pathway protein D; Flags: Precursor
 gi|155391|gb|AAA27615.1| XpsD precursor [Xanthomonas campestris]
 gi|21111677|gb|AAM39986.1| general secretion pathway protein D [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575196|gb|AAY50606.1| general secretion pathway protein D [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 759

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/313 (26%), Positives = 125/313 (39%), Gaps = 33/313 (10%)

Query: 148 HGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           +G V    +  +     ++ET       +  A  S + V+  L++    QV ++  IAEV
Sbjct: 431 NGSVTLEVEGDKVGVSAVAETNTLLVRTSAQAWKSIRDVIEKLDVM-PMQVHIEAQIAEV 489

Query: 206 RRDILKQIGFQH---------SITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRF 254
                 Q G            S    S GP+   AA  G  G          V       
Sbjct: 490 TLTGRLQYGVNWYFENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGSVTSNGVAWTFLGK 549

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVT 308
           +   ++ AL++ T +R L  P++   +   A+   G +    + S +TG       +SV 
Sbjct: 550 NAAAIISALDQVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQ 609

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------------MPSYRVRKA 356
             D GV+L   P V   G + L I  EVS P     A                    R+ 
Sbjct: 610 YIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTTVNSAACNVDINTRRV 669

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T   + +G TI+LAGL+ D       GIP LSK+P++GALF     N +  E+ +  TP
Sbjct: 670 KTEAAVQNGDTIMLAGLIDDSTTDGSNGIPFLSKLPVVGALFGRKTQNSDRREVIVLITP 729

Query: 417 FLVK-PVAMRDLS 428
            +V+ P   RDL+
Sbjct: 730 SIVRNPQDARDLT 742


>gi|307825428|ref|ZP_07655647.1| general secretion pathway protein D [Methylobacter tundripaludum
           SV96]
 gi|307733603|gb|EFO04461.1| general secretion pathway protein D [Methylobacter tundripaludum
           SV96]
          Length = 712

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 121/330 (36%), Gaps = 28/330 (8%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            V  + + +   +++   +      Q        V+  L++    QV +  TI  V+   
Sbjct: 393 EVANVGEVRIISDVANNSVIVVATPQEYEVILP-VIKQLDLL-PLQVLIDATIVSVKLTD 450

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----FSVKGVLDRFSFETVLHALER 265
             + G Q  +    S  S    A   G   +          +  + +      +L A   
Sbjct: 451 SLKYGIQWFLDHGGSSISSGNGAATLGSIATASAAAFTSGGLTAIYNSGIVNALLSAQAN 510

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-------------ATSVTTHDY 312
              +  ++ P+L  ++ Q A    G Q   +T +  +               +S+   D 
Sbjct: 511 KGNVNIISSPSLMVLNNQEAKINVGDQVPIQTGTLGSVVGSGGTTGATTAIQSSIQYKDT 570

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371
           GV L  TP V + G + + I+  VS  V         P+ + ++ +++V +    TIVL 
Sbjct: 571 GVTLEVTPRVNANGMVIMDIKQTVSSAVKTETGVNTSPTIQKKEIESSVAVQDSETIVLG 630

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+ ++      GIP L+++P +G LF N+     + E+ +  TP +VK           
Sbjct: 631 GLIDNNNSNAIGGIPWLNELPWIGPLFGNTDRENIKNELVVLITPRVVKSK--------Q 682

Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           D   + D+ K               +  VE
Sbjct: 683 DSRLISDEFKRKLTGIYEYKAAAPGSPAVE 712


>gi|167646061|ref|YP_001683724.1| general secretion pathway protein D [Caulobacter sp. K31]
 gi|167348491|gb|ABZ71226.1| general secretion pathway protein D [Caulobacter sp. K31]
          Length = 681

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 120/249 (48%), Gaps = 14/249 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             QV ++  + EV  +   + G Q  I      +  S+   AD    F           +
Sbjct: 426 PLQVVIEAVVTEVSLNDALRYGSQWFIRSGDDRAILSRGKTADPASTFP------GFTYL 479

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---SSTGATSV 307
           L+R S    L AL   T +  L+ P L  ++ Q+AS   G Q    T S   SS+  +S+
Sbjct: 480 LNRSSIAATLDALSSVTHVEVLSAPNLMVLNNQTASLEVGDQVPVSTGSALNSSSVISSI 539

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGG 366
              D GV+L  TP V S G + L I  EVS+    +++  D P+  VRK  T++ +  G 
Sbjct: 540 EYRDTGVLLKITPRVNSGGLVLLDIAQEVSDVSPTLSSTIDSPTISVRKIATSIAVQDGQ 599

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T+ L GL++D+ ++L+ G+P LS +P+LGAL  +   +RE TE+ +  TP +++     D
Sbjct: 600 TVALGGLIRDNNKRLRNGVPFLSAVPVLGALAGSRDNSRERTELLVLLTPRVLRNSG--D 657

Query: 427 LSRPDDHYS 435
           +    D   
Sbjct: 658 IQAVTDELR 666


>gi|261365347|ref|ZP_05978230.1| type IV pilus biogenesis protein PilQ [Neisseria mucosa ATCC 25996]
 gi|288566287|gb|EFC87847.1| type IV pilus biogenesis protein PilQ [Neisseria mucosa ATCC 25996]
          Length = 711

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 112/269 (41%), Gaps = 30/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------------- 222
           +K++  L++    QV ++  I E +    + +G +  + GS                   
Sbjct: 439 RKLIEELDVPT-RQVMVEARIVEAKDGFSRDLGVKFGVAGSKGRNAWGNSWSNAQDNHNT 497

Query: 223 --------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                   ++ P+ S   +      +   + ++   L   +    + A E     +T++ 
Sbjct: 498 NSAVLRGDANYPTWSLQPNISLPAAAATNNIALVRALSSGALGLEISASEATGKSKTISN 557

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +     + A+  SG +  Y+  SSS GATSV+     + L  TP V   G++ + ++ 
Sbjct: 558 PRVLTQDRREATIESGTEIPYQEASSS-GATSVSFKKAVLGLTVTPNVTPDGQVIMTVKI 616

Query: 335 EVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
               P    V++      + +  +T   +  GGT+++ G+ ++D       +PLL  +P+
Sbjct: 617 TKDTPQDCTVDSLITKCIQTKNLNTQAMVEDGGTLIVGGIYEEDNSDTINKVPLLGDLPV 676

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422
           +G LF++     E  E+ +  TP ++  V
Sbjct: 677 VGNLFKSRAKKEERRELLVFITPRIMDGV 705


>gi|153947341|ref|YP_001402915.1| outer membrane porin HofQ [Yersinia pseudotuberculosis IP 31758]
 gi|152958836|gb|ABS46297.1| protein transporter HofQ [Yersinia pseudotuberculosis IP 31758]
          Length = 458

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  +  + L+++G +  +    G+++     F  +      +    F V  +
Sbjct: 227 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 286

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +   LE+   +  +A P L     Q+AS   G    Y        A ++   
Sbjct: 287 GGRLLELELSA-LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 345

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P I +  G+  M     ++  T V +  G TI
Sbjct: 346 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 405

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +Q    +PLL+ IP+LGA+FR     +   E+ I  TP L+
Sbjct: 406 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLI 456


>gi|224171310|ref|XP_002339480.1| predicted protein [Populus trichocarpa]
 gi|222875215|gb|EEF12346.1| predicted protein [Populus trichocarpa]
          Length = 263

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 101/254 (39%), Gaps = 22/254 (8%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---------SFAADF 234
           ++N L+     QV ++  I E      +  G        +   S          +     
Sbjct: 15  LINQLDEP-VKQVLIEARIVEADTSAEQTFGIHWGFEFDNDSGSSGGGIGSSLDNAVVGL 73

Query: 235 GGKFVSEGGDFSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           GG F++        G         LD    +  L ALE +   + ++ P + A+ G++A 
Sbjct: 74  GGNFITPTSATDGLGTALTFGRVGLDTIVLDLQLSALESSGGGKVISSPKVMALDGETAR 133

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
              G +  YKT S +   T+       + L  TP +     I L I    S P  GV   
Sbjct: 134 IGQGTEIPYKTTSDN--GTTTEFKKAELALEVTPLINPDNTILLEILATNSSP--GVAYT 189

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D  +   ++A+T + L +G T V+ G+  ++ Q    G P L  +P +G LF+    + +
Sbjct: 190 DGVAINTKEAETKLLLKNGETTVIGGIYTENEQNSDSGTPYLKDLPFIGNLFKYKTSSND 249

Query: 407 ETEIFIAATPFLVK 420
            TE+ I  TP +V 
Sbjct: 250 RTELLIFLTPHIVD 263


>gi|160873627|ref|YP_001552943.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS195]
 gi|160859149|gb|ABX47683.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS195]
 gi|315265856|gb|ADT92709.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS678]
          Length = 559

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 117/296 (39%), Gaps = 23/296 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  ++    + ++ V   +  L             +  +N      + QV L+  I EV 
Sbjct: 240 LTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEVT 299

Query: 207 RDILKQIGFQH-SITGSSSGPSKSFAADFGGKF---VSEGGDFSVKGVLDRFSFETVLHA 262
                Q G Q  ++ G     + +F    G      ++          +    F T+++ 
Sbjct: 300 LSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMINL 359

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312
           L+    +  L+ P +TA + Q A    G    + T  SST   GAT VTT          
Sbjct: 360 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFFS 419

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELP 363
           G+ L  TP + S G + L +   V +                  +    +R++DT +   
Sbjct: 420 GIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAA 479

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           SG  +++ GL+K +  ++   +PLL  IP LG LF+N    +++TE+ I   P +V
Sbjct: 480 SGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535


>gi|297517403|ref|ZP_06935789.1| general secretory pathway component, cryptic [Escherichia coli
           OP50]
          Length = 503

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 118/318 (37%), Gaps = 24/318 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225
             +Q        V+  L+I    QV ++  I EV+      +G Q +         +++G
Sbjct: 178 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 236

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272
                AA     +   GG  S     D FS             +  +L AL        L
Sbjct: 237 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 296

Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G         +T S      +V     G  L  TP V     +
Sbjct: 297 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 356

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++     PLL
Sbjct: 357 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKAPLL 416

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP++G LFR +   R +  + +   P +++   +      + +     + +     + 
Sbjct: 417 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 476

Query: 449 NKIYGPKEASEVEGQNYK 466
             + G ++   ++   + 
Sbjct: 477 KALVGSEDLPVLDENTFN 494


>gi|167834842|ref|ZP_02461725.1| general secretion pathway protein D [Burkholderia thailandensis
           MSMB43]
          Length = 749

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 112/311 (36%), Gaps = 51/311 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----------------------S 218
           + V++ L+     QV ++  I E+  +    +G Q                        S
Sbjct: 387 RAVIDQLDFR-RAQVYIEALIVELNSNTAGNLGIQWQVASGALLAGTNLAATAGTIAGNS 445

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEP 275
           I   ++G   S  A       S     +V  + + F       +L      +    L+ P
Sbjct: 446 IINLTAGNGTSTGAGVAANLASLNQGLNVGWLHNMFGVQGLGALLQYFAGVSDANVLSTP 505

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGR 327
            L  +  + A    G      T S S   +  T          D G+ LH  P +   G 
Sbjct: 506 NLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTNNAFNTYDRRDVGLTLHVKPQITDGGI 565

Query: 328 IGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           + L++ TE S       NA   PS+  R   +T+   +G  IVL GL++D  Q     +P
Sbjct: 566 LKLQLYTEDSAVETSTQNAVTGPSFTKRSIQSTILADNGEIIVLGGLMQDSYQVANSKVP 625

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
           LL  IP LG LFR+    R++T + +   P ++                  + A+A   N
Sbjct: 626 LLGDIPWLGQLFRSESKQRKKTNLMVFLRPVIIND---------------RETAQAVTAN 670

Query: 447 RVNKIYGPKEA 457
           R + I G   +
Sbjct: 671 RYDYIQGVTGS 681


>gi|22127802|ref|NP_671225.1| putative outer membrane porin HofQ [Yersinia pestis KIM 10]
 gi|45440014|ref|NP_991553.1| putative outer membrane porin HofQ [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108814075|ref|YP_649842.1| putative outer membrane porin HofQ [Yersinia pestis Nepal516]
 gi|150260832|ref|ZP_01917560.1| putative membrane transport protein [Yersinia pestis CA88-4125]
 gi|218927361|ref|YP_002345236.1| putative outer membrane porin HofQ [Yersinia pestis CO92]
 gi|229310101|ref|YP_072232.2| outer membrane porin HofQ [Yersinia pseudotuberculosis IP 32953]
 gi|229358042|ref|YP_653226.2| putative outer membrane porin HofQ [Yersinia pestis Antiqua]
 gi|294502239|ref|YP_003566301.1| putative membrane transport protein [Yersinia pestis Z176003]
 gi|21960932|gb|AAM87476.1|AE013997_11 putative transport portein [Yersinia pestis KIM 10]
 gi|45434869|gb|AAS60430.1| putative membrane transport protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777723|gb|ABG20242.1| membrane transport protein [Yersinia pestis Nepal516]
 gi|115345972|emb|CAL18836.1| putative membrane transport protein [Yersinia pestis CO92]
 gi|149290240|gb|EDM40317.1| putative membrane transport protein [Yersinia pestis CA88-4125]
 gi|262364270|gb|ACY60827.1| putative membrane transport protein [Yersinia pestis D182038]
 gi|294352698|gb|ADE63039.1| putative membrane transport protein [Yersinia pestis Z176003]
          Length = 374

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  +  + L+++G +  +    G+++     F  +      +    F V  +
Sbjct: 143 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 202

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +   LE+   +  +A P L     Q+AS   G    Y        A ++   
Sbjct: 203 GGRLLELELSA-LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 261

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P I +  G+  M     ++  T V +  G TI
Sbjct: 262 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 321

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +Q    +PLL+ IP+LGA+FR     +   E+ I  TP L+
Sbjct: 322 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLI 372


>gi|330966297|gb|EGH66557.1| general secretion pathway protein D [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 775

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 103/262 (39%), Gaps = 19/262 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             QV ++  I EV       +G Q  +     +SG + +     G +     G  ++   
Sbjct: 501 PLQVQIETRILEVSLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 560

Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTV 298
              F      + +  L ALE     + L+ P+L  ++ Q A    G              
Sbjct: 561 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 620

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRK 355
           S++T  +SV     GV+L   P +   G + + IQ +VS      N       P    R 
Sbjct: 621 STNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSNADTNTNNNDANGNPRISSRS 680

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V   SG T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  T
Sbjct: 681 VSTQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTTKSKGRTELIVLIT 740

Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437
           P ++   +     +  D Y  +
Sbjct: 741 PRVI--TSSSQARQVTDDYRQQ 760


>gi|158521417|ref|YP_001529287.1| type II and III secretion system protein [Desulfococcus oleovorans
           Hxd3]
 gi|158510243|gb|ABW67210.1| type II and III secretion system protein [Desulfococcus oleovorans
           Hxd3]
          Length = 538

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/315 (21%), Positives = 125/315 (39%), Gaps = 46/315 (14%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--------------EDQV 196
           V  +     A   S   + ++ ++   +  +  V+    + G                QV
Sbjct: 205 VANLLKPVTARAASAEGVKEAQQSVVVDKRNNAVIVHTPLPGIEQCAALIRQIDRPTRQV 264

Query: 197 TLKVTIAEVRRDILKQIGFQHS----------ITGSSSGP-----------------SKS 229
            ++  I E  +D  +Q+G Q             TG++ GP                 + +
Sbjct: 265 LIEAHIVETSKDTARQLGIQWGGVAKDKQHSWFTGATEGPAGQTLFDANGVPVAANPTGN 324

Query: 230 FAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           +AA+F     + G     +   L +      L ALE    +  L+ P++T +   +A   
Sbjct: 325 WAANFPASLGNTGLSLGYIYQDLGQSLIAAQLTALEEDGKLNILSSPSITTLDNSAAVIE 384

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAG 346
           SG    ++TV       ++      + L  TP ++    + ++I+T   E      V   
Sbjct: 385 SGRDVPFQTV--EDNEVNIEWKKAVLSLAVTPHIIDASTLRVKIKTHKDELDWSNAVLTD 442

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P+   + A+T + L  G T V+ GL K    Q + G+PLL +IPILG  FR++  + +
Sbjct: 443 GNPTIITKNAETEMILFDGQTTVIGGLNKQSSSQSQFGVPLLGRIPILGFFFRSTSRSND 502

Query: 407 ETEIFIAATPFLVKP 421
             E+ I  TP +++P
Sbjct: 503 MEEVLIFITPHILEP 517


>gi|325206729|gb|ADZ02182.1| type IV pilus secretin PilQ [Neisseria meningitidis M04-240196]
          Length = 761

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553

Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 554 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 613

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   S + G +S  T      + L  TP +   G+I + ++     P  
Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673

Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+ 
Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733

Query: 401 SRFNREETEIFIAATPFLV 419
                +  E+ I  TP ++
Sbjct: 734 RGKKTDRRELLIFITPRIM 752


>gi|300114921|ref|YP_003761496.1| general secretion pathway protein D [Nitrosococcus watsonii C-113]
 gi|299540858|gb|ADJ29175.1| general secretion pathway protein D [Nitrosococcus watsonii C-113]
          Length = 833

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/272 (25%), Positives = 113/272 (41%), Gaps = 16/272 (5%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF------AADFGGKF 238
           +  L+I    QV ++ TIAEV      Q G Q   T   +    +       A   GG  
Sbjct: 532 LRQLDIP-PRQVLVEATIAEVALTGSLQYGLQWYFTNDLASGQGAGGQGALPALGEGGLQ 590

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
               G        D      +L  L     +  L+ P L A+  Q+A    G Q   +  
Sbjct: 591 ALMAGGGFTYAFADGGVVRALLRLLASENKVEILSSPQLLALDNQTAEIRVGDQVPIQQG 650

Query: 299 SSSTGATSVT---THDYGVVLHFTPTVLSPGRIGLRIQTEV------SEPVIGVNAGDMP 349
            ++    +       D GV+L  TP V + GR+ + +  EV      S P      G  P
Sbjct: 651 QTTGIGGTTQQIRYRDTGVLLTVTPRVNAGGRVTMELTQEVTDVGGTSLPGGATTVGGNP 710

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R   + V + SG TIVL GL++++    + G+P L K+P++G LF  +  +R+ TE
Sbjct: 711 TFLQRNFQSVVTVQSGETIVLGGLIRNNDAFNQSGVPFLYKLPLIGPLFGTTTRSRQRTE 770

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           + +  TP +V+      L   +    +++ + 
Sbjct: 771 LVVLMTPRVVRDQYEARLVTEELREKLKNASD 802


>gi|241759496|ref|ZP_04757600.1| fimbrial assembly protein PilQ [Neisseria flavescens SK114]
 gi|241320278|gb|EER56611.1| fimbrial assembly protein PilQ [Neisseria flavescens SK114]
          Length = 710

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 104/269 (38%), Gaps = 30/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------- 226
           +K+++ L++    QV ++  I E      + +G +    G+                   
Sbjct: 438 RKLIDELDVPT-RQVMVEARIVEAEDTFFRNLGVKFGSGGAIGRTAWGSNWSNAQTNYKT 496

Query: 227 ------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                       + +   +      +     ++       +    + A E     +T++ 
Sbjct: 497 NASFNRGEVGYRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISN 556

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +     + A   SG +  Y+  SSS GATS+T     + L  TP +   G+I + ++ 
Sbjct: 557 PRVLTQDRKEAKIESGTEIPYQEASSS-GATSITFKKAVLGLTVTPNITPDGQIIMTVKI 615

Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
               P+   V++        +  +T   +  GGT+++ G+ +++       +P+L  IP+
Sbjct: 616 NRDTPIDCTVDSLMTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPV 675

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422
           +G LF++        E+ I  TP ++  V
Sbjct: 676 VGNLFKSRGKRENRRELLIFITPRIMDNV 704


>gi|152999034|ref|YP_001364715.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS185]
 gi|151363652|gb|ABS06652.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS185]
          Length = 559

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 117/296 (39%), Gaps = 23/296 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  ++    + ++ V   +  L             +  +N      + QV L+  I EV 
Sbjct: 240 LTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEVT 299

Query: 207 RDILKQIGFQH-SITGSSSGPSKSFAADFGGKF---VSEGGDFSVKGVLDRFSFETVLHA 262
                Q G Q  ++ G     + +F    G      ++          +    F T+++ 
Sbjct: 300 LSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMINL 359

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312
           L+    +  L+ P +TA + Q A    G    + T  SST   GAT VTT          
Sbjct: 360 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFFS 419

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELP 363
           G+ L  TP + S G + L +   V +                  +    +R++DT +   
Sbjct: 420 GIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAA 479

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           SG  +++ GL+K +  ++   +PLL  IP LG LF+N    +++TE+ I   P +V
Sbjct: 480 SGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535


>gi|218710790|ref|YP_002418411.1| type IV pilus assembly protein PilQ [Vibrio splendidus LGP32]
 gi|218323809|emb|CAV20166.1| type IV pilus assembly protein PilQ [Vibrio splendidus LGP32]
          Length = 572

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 108/267 (40%), Gaps = 31/267 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------------- 219
           + ++  L+I    QV ++  I  V    L ++G +  +                      
Sbjct: 306 RGIIESLDIP-VKQVQIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQIT 364

Query: 220 ----TGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                G +S        + G    S     F V  +      +  L AL++ +    ++ 
Sbjct: 365 PYDDNGGNSAIDDFLNVNLGATSPSASSIAFQVAKLGSDTLLDLELSALQQESKAEIISS 424

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L   + + A    G +  Y   SSS+GATSV      + L  TP +    R+ L +  
Sbjct: 425 PRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSV 483

Query: 335 EVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
               P  V+    G+  +   ++  T V + +G T+VL G+ +  +    + +PLL  +P
Sbjct: 484 TQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSQVDKVPLLGDLP 543

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
           +LGALFR S  N  ++E+ I  TP +V
Sbjct: 544 VLGALFRRSYENVGKSELLIFVTPKVV 570


>gi|325204768|gb|ADZ00222.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240355]
          Length = 761

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553

Query: 236 GK------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 554 GGDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 613

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   S + G +S  T      + L  TP +   G+I + ++     P  
Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673

Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+ 
Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733

Query: 401 SRFNREETEIFIAATPFLV 419
                +  E+ I  TP ++
Sbjct: 734 RGKKTDRRELLIFITPRIM 752


>gi|74317457|ref|YP_315197.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
           25259]
 gi|74056952|gb|AAZ97392.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
           25259]
          Length = 656

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 100/445 (22%), Positives = 176/445 (39%), Gaps = 55/445 (12%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
             P+  K   ++  +A + N+ D+   +      GLN V    V +D +  L +  T  D
Sbjct: 175 LGPAFHKPITLEFRDAPLRNVFDMIARQS-----GLNFVFDKDVRLDTKATLFARNTPID 229

Query: 79  VVVHSPRTMYLFGKNVGQANVILI--GHDGKQMLNLDILI------ERDIAHLEMTLRRF 130
             V          K V  AN +LI      KQ    ++++        D       LR  
Sbjct: 230 EAVDMLLMTGQLSKKVVNANTLLIYPDQPQKQKAYQELMVKSFYLGNADAKATMAMLRTL 289

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           +   ++ V+   + +V+        D+  A+ L+E  ++                  +  
Sbjct: 290 VKAKDLHVDERLNLLVMR-------DTPDAIRLAERIVA------------------VQD 324

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGDFSVK 248
             E +V L+V + EV+R  L  +G Q+    S     P+ S     GG   +     SV 
Sbjct: 325 LAEPEVMLEVEVLEVKRGRLLDLGIQYPTNFSLLNLPPATSSTIGPGGVVTNTTPPPSVL 384

Query: 249 GVLDRFSFETV---------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
            V    +             +   ++ + +  LA P +   + + A    G +    T +
Sbjct: 385 TVESLKNITASQIAISPTPGVDLRKQDSDVNILANPRIRVKNREKAKIHIGDKVPVITSN 444

Query: 300 SSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRV 353
           +++      SV+  D G+ L   P+VL    + +R+  EVS  V  + +G+         
Sbjct: 445 TTSTGVVSESVSYLDVGLKLDVEPSVLMREDVQIRVGLEVSNIVREIRSGNGTLTYQIGT 504

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R A TT+ L  G T VLAGL+ D+ +     IP L  +P++G LF + R  R +TEI + 
Sbjct: 505 RNAGTTLRLKDGETQVLAGLISDEDRSTASRIPGLGDLPLIGRLFSSQRDERNKTEIVLL 564

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVED 438
            TP +++  A R  +  +     E+
Sbjct: 565 ITPRVLRSDATRLPALTEFRGGTEN 589


>gi|261820712|ref|YP_003258818.1| general secretion pathway protein D [Pectobacterium wasabiae
           WPP163]
 gi|261604725|gb|ACX87211.1| general secretion pathway protein D [Pectobacterium wasabiae
           WPP163]
          Length = 640

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 127/349 (36%), Gaps = 45/349 (12%)

Query: 146 VLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYAN----------SSSKKVMNLLNIAGED 194
           VL G+  +IQ D Q A+      +S     Q  +             ++V+  L+I    
Sbjct: 266 VLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP- 324

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKF 238
           QV ++  IAEV+      +G Q +   + +    +                         
Sbjct: 325 QVLVEAIIAEVQDADGMNLGVQWANKNAGTTQFTNTGLPITTMMAGADQFRRNGTLSTAA 384

Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
            S  G F+ +     + ++  ++ AL   +    LA P++  +    A+F  G +     
Sbjct: 385 TSALGSFNGIAAGFYQGNWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLA 444

Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PS 350
             +T S      +V     G+ L   P +     + L I+ EVS      ++       +
Sbjct: 445 GSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSAELGAT 504

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+V+ GLL    ++    +PLL  IPILG LFR++     +  +
Sbjct: 505 FNTRTVNNAVLVSSGETVVVGGLLDKSTRESASKVPLLGDIPILGHLFRSNSQETSKRNL 564

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
            +   P +++  +          Y     +K   FN   +        E
Sbjct: 565 MLFIRPSIIRDRS---------EYQSASASKYRSFNNEEEKQRNVSNGE 604


>gi|120600401|ref|YP_964975.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. W3-18-1]
 gi|120560494|gb|ABM26421.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. W3-18-1]
          Length = 558

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 120/295 (40%), Gaps = 22/295 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  ++    + ++ V   +  L             +  +N      + QV L+  I EV 
Sbjct: 240 LTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEVT 299

Query: 207 RDILKQIGFQH-SITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHAL 263
                Q G Q  ++ G     + +F    G  G  V+          +    F T+++ L
Sbjct: 300 LSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINLL 359

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------G 313
           +    +  L+ P +TA + Q A    G    + T  SST   G T VTT          G
Sbjct: 360 DTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSG 419

Query: 314 VVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELPS 364
           + L  TP +   G + L +   V           +   + ++P     +R++DT +   S
Sbjct: 420 IALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAAS 479

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G  +V+ GL+K +  ++   +PLL  IP+LG LF+N    +++TE+ I   P +V
Sbjct: 480 GDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVV 534


>gi|158520346|ref|YP_001528216.1| type IV pilus secretin PilQ [Desulfococcus oleovorans Hxd3]
 gi|158509172|gb|ABW66139.1| type IV pilus secretin PilQ [Desulfococcus oleovorans Hxd3]
          Length = 987

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 111/259 (42%), Gaps = 24/259 (9%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------- 233
           +++++  ++     QV +K  I E      ++ G +  I    + P+ +   D       
Sbjct: 732 AREIIAKIDKVTP-QVMIKARIVETSSSFSREFGTEWGIDNRYNSPNINIGTDGAYRDEM 790

Query: 234 ------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                             +  G    + +   FS +  L  +E    ++ ++ P +  + 
Sbjct: 791 GGTYTYDVALNSLSSPVQNLIGINFARIIGTPFSLDAKLSLMESTGDVKIISTPKVVTLD 850

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A+ + G  + Y  V    G   V      + L  TP V    RI +++  + ++   
Sbjct: 851 NKTATISQGIDYPYTVV--EDGEADVKWKTIDLNLDVTPHVTPDDRISMKLNIQKNDVGE 908

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +N     S+  ++A T + +  G T+V+ G++K+     + G+P +SKIP+LG LF+  
Sbjct: 909 IINGEQ--SFNTKRASTELLVNDGDTVVIGGIIKEREGAGERGVPWISKIPVLGNLFKYK 966

Query: 402 RFNREETEIFIAATPFLVK 420
             + E++E+ I  TP +V+
Sbjct: 967 TRSDEKSELLIFITPNVVR 985


>gi|94500719|ref|ZP_01307248.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
 gi|94427041|gb|EAT12022.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
          Length = 640

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 106/263 (40%), Gaps = 23/263 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---- 234
           S  K+++  L++    QV ++  I EV   +  ++G Q +     +G +   A DF    
Sbjct: 338 SEIKEIVTELDVR-RAQVLIEAAIVEVTGQVDDRVGVQTAALDQETGETPLVATDFANAG 396

Query: 235 ------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                       G   +S G      G      F  ++ ALE  +    L+ P++  +  
Sbjct: 397 TSISQLITGIATGQPAISSGLTLGGVGQNGDTEFAFLVQALESVSNANLLSTPSIMTMDN 456

Query: 283 QSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
             A    G    + T S+S+ +     T++   D G  L  TP V     + L ++    
Sbjct: 457 HEAEIIVGQNVPFVTGSTSSTSNSNPFTTIKREDIGTTLKVTPHVQDGKFVRLSVEQSTE 516

Query: 338 EPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                   G        R   T +   +G  ++L GL++D +Q+ +  +P L  IPI+G 
Sbjct: 517 SVAPTAVEGQADLITNKRSIQTQILAENGEIVMLGGLIRDAVQESESKVPFLGDIPIIGW 576

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFR++  +R +  + +   P +V
Sbjct: 577 LFRSTSESRVKQNLIVFLKPTVV 599


>gi|294139057|ref|YP_003555035.1| MSHA biogenesis protein MshL [Shewanella violacea DSS12]
 gi|293325526|dbj|BAJ00257.1| MSHA biogenesis protein MshL [Shewanella violacea DSS12]
          Length = 560

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 109/251 (43%), Gaps = 24/251 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV- 250
           + QV ++  I EV      Q G    ++ G     +  F    GG  +S+     + GV 
Sbjct: 279 QRQVIIEAKILEVTLSDGYQQGINWQNVLGHVGDTNIEFGTSSGGNSLSDQITSVIGGVT 338

Query: 251 ---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GA 304
                   F  +++ L+    +  L+ P +TA++ Q A    G    + T  SST   G 
Sbjct: 339 SLKFSGTDFAAMINLLDTQGDVDVLSSPRVTALNNQKAVIKVGTDEYFVTDVSSTTVAGN 398

Query: 305 TSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP- 349
           T +TT +        G+ L  TP +   G + L I   V           I  +  ++P 
Sbjct: 399 TPITTPEVELTPFFSGIALDVTPQIDGEGNVLLHIHPSVISIKEQTKTIKISDSTLELPL 458

Query: 350 -SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
               +R++DT +   SG  +V+ GL+K +  +L   +PLL  IP+LG LF N   + ++T
Sbjct: 459 AQSDIRESDTVIMARSGDVVVIGGLMKSENIELLSKVPLLGDIPLLGELFTNRSKSLKKT 518

Query: 409 EIFIAATPFLV 419
           E+ I   P +V
Sbjct: 519 ELVILLKPTVV 529


>gi|89899353|ref|YP_521824.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89344090|gb|ABD68293.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 702

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 113/310 (36%), Gaps = 33/310 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+     QV ++  I EV  D   + G Q    G             G  F + 
Sbjct: 371 RAVIDRLD-GRRAQVLVESLIVEVNADRAAEFGIQW--QGPLGKAGDGVIGLLGTNFGAA 427

Query: 242 GGDF-------------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           G +                    +V+     +    + + LE + +   L+ P L  +  
Sbjct: 428 GKNIINLATGAGAVAPGAGLNFGAVQRTNGVYVLGFLANFLETSGSGNVLSTPNLLTLDN 487

Query: 283 QSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           + A    G    + T S ++  T         +V   D G+ L   P +   G + + I 
Sbjct: 488 EEAKIVIGENVPFVTGSYTSNNTSGASVNPFTTVERKDVGLTLKVKPQINEDGTVKMVIY 547

Query: 334 TEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            E S    G     + P+   R  ++TV +  G  +VL GLL+D     ++ +P L  +P
Sbjct: 548 QETSAVKAGTEKDANGPTTSKRTIESTVLVDDGSIVVLGGLLQDKYSGNQDKVPGLGDVP 607

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           + G LF++    R +T + +   P +V+     D     D Y +            +++ 
Sbjct: 608 LFGNLFKSEARTRNKTNLMVFLRPVVVRDAHASD-QLSMDRYDLMRSGMNAAQPVASQLV 666

Query: 453 GPKEASEVEG 462
              EA ++  
Sbjct: 667 PINEAPQLPA 676


>gi|73542913|ref|YP_297433.1| type II and III secretion system protein:NolW-like [Ralstonia
           eutropha JMP134]
 gi|72120326|gb|AAZ62589.1| type II and III secretion system protein:NolW-like [Ralstonia
           eutropha JMP134]
          Length = 804

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 114/301 (37%), Gaps = 40/301 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVS 240
           + V+  L+ A   QV ++  I EV      Q+G Q   +  SSSG +  FA    G    
Sbjct: 424 RAVIEDLD-ARRAQVYIESMIVEVTSTQASQLGIQWQGLLSSSSGNNNVFAGTNFGTGGQ 482

Query: 241 EGGDFSVKGVLDRFSFETVLHALER----------------------------ATAIRTL 272
              + ++ G L   +    + A ++                              ++  L
Sbjct: 483 NILNLTLAGALYNSNHSAGIVAAQQLVPDVGGLNLGVVNKALGLGALLRALGTNGSVNLL 542

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVT------THDYGVVLHFTPTVLS 324
           + P L  +  + A    G      T S   + GA SVT        D G+ L   P +  
Sbjct: 543 STPNLITLENEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVRPQITD 602

Query: 325 PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G + ++I  E S  V G       P+  VR  +T V +  G  IVL GL++D      +
Sbjct: 603 GGLVKMQIFQESSSVVPGTLTQVQGPTTNVRSIETNVLVDDGQIIVLGGLIEDSYGDGVQ 662

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +PLL  IP +G LFR    NR +T + +   P++++     D     D Y      +  
Sbjct: 663 KVPLLGDIPWIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAAD-RLTQDRYDYMRAQQTD 721

Query: 444 F 444
           F
Sbjct: 722 F 722


>gi|304411539|ref|ZP_07393152.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS183]
 gi|307306685|ref|ZP_07586427.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           BA175]
 gi|304350066|gb|EFM14471.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS183]
 gi|306910653|gb|EFN41082.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           BA175]
          Length = 559

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 117/296 (39%), Gaps = 23/296 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  ++    + ++ V   +  L             +  +N      + QV L+  I EV 
Sbjct: 240 LTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEVT 299

Query: 207 RDILKQIGFQH-SITGSSSGPSKSFAADFGGKF---VSEGGDFSVKGVLDRFSFETVLHA 262
                Q G Q  ++ G     + +F    G      ++          +    F T+++ 
Sbjct: 300 LSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMINL 359

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312
           L+    +  L+ P +TA + Q A    G    + T  SST   GAT VTT          
Sbjct: 360 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFFS 419

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELP 363
           G+ L  TP + S G + L +   V +                  +    +R++DT +   
Sbjct: 420 GIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAA 479

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           SG  +++ GL+K +  ++   +PLL  IP LG LF+N    +++TE+ I   P +V
Sbjct: 480 SGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535


>gi|325135596|gb|EGC58213.1| type IV pilus secretin PilQ [Neisseria meningitidis M0579]
          Length = 761

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553

Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 554 GDDKWEAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 613

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   S + G +S  T      + L  TP +   G+I + ++     P  
Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673

Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+ 
Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733

Query: 401 SRFNREETEIFIAATPFLV 419
                +  E+ I  TP ++
Sbjct: 734 RGKKTDRRELLIFITPRIM 752


>gi|325131459|gb|EGC54166.1| type IV pilus secretin PilQ [Neisseria meningitidis M6190]
 gi|325137566|gb|EGC60147.1| type IV pilus secretin PilQ [Neisseria meningitidis ES14902]
 gi|325197687|gb|ADY93143.1| type IV pilus secretin PilQ [Neisseria meningitidis G2136]
 gi|325201543|gb|ADY96997.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240149]
 gi|325207524|gb|ADZ02976.1| type IV pilus secretin PilQ [Neisseria meningitidis NZ-05/33]
          Length = 769

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 503 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 561

Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 562 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 621

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   S + G +S  T      + L  TP +   G+I + ++     P  
Sbjct: 622 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 681

Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+ 
Sbjct: 682 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 741

Query: 401 SRFNREETEIFIAATPFLV 419
                +  E+ I  TP ++
Sbjct: 742 RGKKTDRRELLIFITPRIM 760


>gi|254804373|ref|YP_003082594.1| fimbrial assembly protein; pilus secretin [Neisseria meningitidis
           alpha14]
 gi|304388332|ref|ZP_07370446.1| type IV pilus secretin PilQ [Neisseria meningitidis ATCC 13091]
 gi|254667915|emb|CBA04080.1| fimbrial assembly protein; pilus secretin [Neisseria meningitidis
           alpha14]
 gi|254670030|emb|CBA04815.1| fimbrial assembly protein [Neisseria meningitidis alpha153]
 gi|261393150|emb|CAX50762.1| type IV pilus secretin PilQ [Neisseria meningitidis 8013]
 gi|304337694|gb|EFM03849.1| type IV pilus secretin PilQ [Neisseria meningitidis ATCC 13091]
 gi|325133588|gb|EGC56249.1| type IV pilus secretin PilQ [Neisseria meningitidis M13399]
 gi|325141680|gb|EGC64140.1| type IV pilus secretin PilQ [Neisseria meningitidis 961-5945]
          Length = 761

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553

Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 554 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 613

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   S + G +S  T      + L  TP +   G+I + ++     P  
Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673

Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+ 
Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733

Query: 401 SRFNREETEIFIAATPFLV 419
                +  E+ I  TP ++
Sbjct: 734 RGKKTDRRELLIFITPRIM 752


>gi|227327883|ref|ZP_03831907.1| general secretion pathway protein D [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 684

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 119/311 (38%), Gaps = 36/311 (11%)

Query: 146 VLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYAN----------SSSKKVMNLLNIAGED 194
           VL G+  +IQ D Q A+      +S     Q  +             ++V+  L+I    
Sbjct: 310 VLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP- 368

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKF 238
           QV ++  IAEV+      +G Q +   +      +                     G   
Sbjct: 369 QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAA 428

Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
            +  G F+ +     + ++  +L AL + +    LA P++  +    A+F  G +     
Sbjct: 429 TTALGGFNGIAAGFYQGNWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLA 488

Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPS 350
             +T S      +V     G+ L   P +     + L I+ EVS      +        +
Sbjct: 489 GSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGAT 548

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+V+ GLL     +    +PLL  IP+LG LFR++    ++  +
Sbjct: 549 FNTRTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNL 608

Query: 411 FIAATPFLVKP 421
            +   P +++ 
Sbjct: 609 MLFIRPSIIRD 619


>gi|161869408|ref|YP_001598575.1| type IV pilus assembly protein PilQ [Neisseria meningitidis 053442]
 gi|218767605|ref|YP_002342117.1| pilus secretin [Neisseria meningitidis Z2491]
 gi|62287129|sp|Q9JVW4|PILQ_NEIMA RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           Flags: Precursor
 gi|121051613|emb|CAM07913.1| pilus secretin [Neisseria meningitidis Z2491]
 gi|161594961|gb|ABX72621.1| type IV pilus assembly protein PilQ [Neisseria meningitidis 053442]
 gi|325129552|gb|EGC52376.1| type IV pilus secretin PilQ [Neisseria meningitidis OX99.30304]
          Length = 761

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553

Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 554 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 613

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   S + G +S  T      + L  TP +   G+I + ++     P  
Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673

Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+ 
Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733

Query: 401 SRFNREETEIFIAATPFLV 419
                +  E+ I  TP ++
Sbjct: 734 RGKKTDRRELLIFITPRIM 752


>gi|331005872|ref|ZP_08329224.1| Helix-turn-helix, AraC type [gamma proteobacterium IMCC1989]
 gi|330420316|gb|EGG94630.1| Helix-turn-helix, AraC type [gamma proteobacterium IMCC1989]
          Length = 659

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 106/258 (41%), Gaps = 23/258 (8%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----------- 232
           V+  L+I    QV ++  I E+  D+ +++G + +    ++G   S  +           
Sbjct: 349 VIKRLDIR-RAQVLVEAIIVEITNDLSRELGVEWAAYKQNNGFIGSRNSATLGTLATAIE 407

Query: 233 ---DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                 G     G      G  +   F  +++  + +     L+ P+L       A  + 
Sbjct: 408 SGDGIAGAPNFTGQGLGFFGNSNGVDFAGLINFFQGSAEANVLSTPSLLTTDNNEAEISI 467

Query: 290 GGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           G    + T S +T +        ++   D G+ L  TP +     + L IQ EVS     
Sbjct: 468 GQNVPFVTGSFTTSSGDSTDPFQTIEREDVGISLKVTPQINEGDTVNLEIQQEVSSISNS 527

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             A D+ +   RK  T V    G TI+L GL+ ++++Q ++ +P L  IP+LG LFRN  
Sbjct: 528 SQASDVIT-NERKISTKVIAQDGETIILGGLISNEVRQDEQKVPFLGDIPLLGGLFRNDS 586

Query: 403 FNREETEIFIAATPFLVK 420
               +  + +     +++
Sbjct: 587 TTSSKQNLMVFLRATILR 604


>gi|308389910|gb|ADO32230.1| pilQ protein [Neisseria meningitidis alpha710]
          Length = 761

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553

Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 554 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 613

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   S + G +S  T      + L  TP +   G+I + ++     P  
Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673

Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+ 
Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733

Query: 401 SRFNREETEIFIAATPFLV 419
                +  E+ I  TP ++
Sbjct: 734 RGKKTDRRELLIFITPRIM 752


>gi|170022485|ref|YP_001718990.1| putative outer membrane porin HofQ [Yersinia pseudotuberculosis
           YPIII]
 gi|169749019|gb|ACA66537.1| type IV pilus secretin PilQ [Yersinia pseudotuberculosis YPIII]
          Length = 460

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  +  + L+++G +  +    G+++     F  +      +    F V  +
Sbjct: 229 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 288

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +    E+   +  +A P L     Q+AS   G    Y        A ++   
Sbjct: 289 GGRLLELELSAL-EQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 347

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P I +  G+  M     ++  T V +  G TI
Sbjct: 348 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 407

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +Q    +PLL+ IP+LGA+FR     +   E+ I  TP L+
Sbjct: 408 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLI 458


>gi|325143815|gb|EGC66131.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240013]
          Length = 801

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 535 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 593

Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 594 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 653

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   S + G +S  T      + L  TP +   G+I + ++     P  
Sbjct: 654 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 713

Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+ 
Sbjct: 714 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 773

Query: 401 SRFNREETEIFIAATPFLV 419
                +  E+ I  TP ++
Sbjct: 774 RGKKTDRRELLIFITPRIM 792


>gi|238792812|ref|ZP_04636443.1| General secretion pathway protein D [Yersinia intermedia ATCC
           29909]
 gi|238727920|gb|EEQ19443.1| General secretion pathway protein D [Yersinia intermedia ATCC
           29909]
          Length = 658

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 109/278 (39%), Gaps = 17/278 (6%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVSE 241
           V+  L++    QV ++  I E +      +G Q     +G  +    S       + +  
Sbjct: 350 VIEKLDVR-RAQVLVEAIIVETQNGEGLNLGIQWENKFSGGVNFIPNSANTRNNSERMPP 408

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                +     + ++  +  AL   +    LA P++  +    A F  G +    T + +
Sbjct: 409 MAIAGLTAGFYKGNWSGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLTSTQT 468

Query: 302 TGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVR 354
           T       S++  + GV+L   P +     + L I+ EVS      +A        +  R
Sbjct: 469 TSTDRVYNSISRKNVGVMLKVKPQINKGDSVLLEIRQEVSSIADSSDANANNLGSIFNKR 528

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             +  V + SG T+V+ GLL   I ++   IP+L  IP +G LFR  +   E++ + +  
Sbjct: 529 VVNNAVLVKSGETVVVGGLLDKKIYKIVNKIPILGDIPFIGGLFRQKKEKVEKSNLILFI 588

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
            P +++  +       D +    +    +    +N+ +
Sbjct: 589 KPTILRETS-------DYNLVTAEKYTEYNNGNINEKF 619


>gi|153833899|ref|ZP_01986566.1| general secretion pathway protein D [Vibrio harveyi HY01]
 gi|148869737|gb|EDL68714.1| general secretion pathway protein D [Vibrio harveyi HY01]
          Length = 681

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 133/376 (35%), Gaps = 76/376 (20%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNI 190
           VL G+   +Q  ++A +   +   +      A+ ++                 V++ L+I
Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA------------ 231
               QV ++  I E+       +G Q         I   ++G S                
Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGNLETGAVIQYGNTGASIGGVMIGLEEAKDSER 399

Query: 232 -------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
                                     D+     +  G       +    +  ++ A+   
Sbjct: 400 TESTYDPQNPNANPDGYVERKFTEEGDYSTLAAALSGVNGAAMSIVMGDWTALISAVSSD 459

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPT 321
           +    L+ P++T +    ASF  G +    T S++         +V   + G+ L   P 
Sbjct: 460 SNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQ 519

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + 
Sbjct: 520 INEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALES 578

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           +  +PLL  IP++G LF+++    E+  + +   P +++     D              +
Sbjct: 579 ESKVPLLGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIRDGMTADGIT----------QR 628

Query: 442 AFFFNRVNKIYGPKEA 457
            + F R  ++Y  +E 
Sbjct: 629 KYNFIRAEQLYKAQEG 644


>gi|227824391|ref|ZP_03989223.1| type II and III secretion system protein [Acidaminococcus sp. D21]
 gi|226904890|gb|EEH90808.1| type II and III secretion system protein [Acidaminococcus sp. D21]
          Length = 424

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 15/250 (6%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
           +    + ++KV+  ++   + QVTL+  I  ++ D  +++G Q   +G     S+     
Sbjct: 142 SPGDQARAQKVLARMD-RLQKQVTLEARILSLQEDASRELGLQWKWSGLPQQNSEE---- 196

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                 ++GG F + G     SF+ +L AL +    + LA P +  + G+      G   
Sbjct: 197 ------TDGGTFHL-GHGYTGSFQGILSALCQKGKAKVLATPRIVTVPGKEGKIFIGDHI 249

Query: 294 LYKT--VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
              T  VS+ T  TS    D G+ L +TP V   G I   + TEVS P + ++       
Sbjct: 250 PVVTEKVSNGTTTTSTEYVDAGIRLSYTPIVGPDGVITASVHTEVSTPTL-ISELHNYRI 308

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R ADT V L  G T+V+ GL+ D+ Q+  E IPLLSK+P+LG LF      +  TE+ 
Sbjct: 309 TSRTADTNVRLLEGETLVIGGLISDEEQKRLETIPLLSKLPLLGNLFTFRSRKKTRTEVV 368

Query: 412 IAATPFLVKP 421
           +  TP+L +P
Sbjct: 369 MLLTPYLTEP 378


>gi|319409865|emb|CBY90178.1| type IV pilus secretin PilQ [Neisseria meningitidis WUE 2594]
          Length = 761

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553

Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 554 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 613

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   S + G +S  T      + L  TP +   G+I + ++     P  
Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673

Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+ 
Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733

Query: 401 SRFNREETEIFIAATPFLV 419
                +  E+ I  TP ++
Sbjct: 734 RGKKTDRRELLIFITPRIM 752


>gi|316984411|gb|EFV63384.1| type IV pilus secretin PilQ family protein [Neisseria meningitidis
           H44/76]
 gi|325200874|gb|ADY96329.1| type IV pilus secretin PilQ [Neisseria meningitidis H44/76]
          Length = 777

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 511 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 569

Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 570 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 629

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   S + G +S  T      + L  TP +   G+I + ++     P  
Sbjct: 630 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 689

Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+ 
Sbjct: 690 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 749

Query: 401 SRFNREETEIFIAATPFLV 419
                +  E+ I  TP ++
Sbjct: 750 RGKKTDRRELLIFITPRIM 768


>gi|42186|emb|CAA49645.1| outD [Pectobacterium carotovorum]
          Length = 649

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 118/311 (37%), Gaps = 36/311 (11%)

Query: 146 VLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYAN----------SSSKKVMNLLNIAGED 194
           VL G+  +IQ D Q A+      +S     Q  +             ++V+  L+I    
Sbjct: 275 VLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP- 333

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKF 238
           QV ++  IAEV+      +G Q +   +      +                     G   
Sbjct: 334 QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAA 393

Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
            +  G F+ +     + ++  ++ AL   +    LA P++  +    A+F  G +     
Sbjct: 394 TTALGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLA 453

Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPS 350
             +T S      +V     G+ L   P +     + L I+ EVS      +        +
Sbjct: 454 GSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLGAT 513

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+V+ GLL     +    +PLL  IP+LG LFR++    ++  +
Sbjct: 514 FNTRTVNNAVLVSSGDTVVVGGLLDKSTNESANKVPLLGDIPVLGYLFRSNSTETKKRNL 573

Query: 411 FIAATPFLVKP 421
            +   P +++ 
Sbjct: 574 MLFIRPSIIRD 584


>gi|15678016|ref|NP_274809.1| pilQ protein [Neisseria meningitidis MC58]
 gi|62287061|sp|Q70M91|PILQ_NEIMB RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           Flags: Precursor
 gi|66731938|gb|AAY52170.1| pilQ protein [Neisseria meningitidis MC58]
 gi|325139633|gb|EGC62172.1| type IV pilus secretin PilQ [Neisseria meningitidis CU385]
          Length = 769

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 503 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 561

Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 562 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 621

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   S + G +S  T      + L  TP +   G+I + ++     P  
Sbjct: 622 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 681

Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+ 
Sbjct: 682 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 741

Query: 401 SRFNREETEIFIAATPFLV 419
                +  E+ I  TP ++
Sbjct: 742 RGKKTDRRELLIFITPRIM 760


>gi|294666157|ref|ZP_06731413.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604073|gb|EFF47468.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 763

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 79/329 (24%), Positives = 132/329 (40%), Gaps = 46/329 (13%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            +  + +E+  D V +            AV  + T L +S    +  SS + V+  L++ 
Sbjct: 433 GNGAVTLEVAGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 479

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV ++  +AEV        G       + +  S S    FGG  +      ++ G +
Sbjct: 480 -PMQVHIEAQVAEVNLTGALSYGVNWYFENAVNAASDSTTYGFGGAGLPSAAGRNIWGDI 538

Query: 252 DRF-------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                           +   ++ AL+  + +R L  P++   +   A+   G +    + 
Sbjct: 539 AGRVTDGGVAWTFLGKNAAAIISALDTVSNVRLLQTPSVFVRNNAEATLNVGSRIPINST 598

Query: 299 SSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------- 342
           S +TG       +SV   D GV+L   P V   G + L I  E+S P             
Sbjct: 599 SINTGLGSDSSYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEISTPGARPAACTAETTT 658

Query: 343 --VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
              +A        R+  T   + SG T++LAGL+ D       G+P LSK+PI+GALF  
Sbjct: 659 TVNSAACNVDINTRRVKTEAAVQSGDTMMLAGLIDDSTTDGSVGVPFLSKLPIVGALFGR 718

Query: 401 SRFNREETEIFIAATPFLVK-PVAMRDLS 428
              N +  E+ +  TP +V+ P   RDL+
Sbjct: 719 KTQNTDRREVIVLITPSIVRNPKESRDLT 747


>gi|145597400|ref|YP_001161475.1| putative outer membrane porin HofQ [Yersinia pestis Pestoides F]
 gi|165928024|ref|ZP_02223856.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|166010419|ref|ZP_02231317.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|108781223|gb|ABG15281.1| putative membrane transport protein [Yersinia pestis Antiqua]
 gi|145209096|gb|ABP38503.1| membrane transport protein [Yersinia pestis Pestoides F]
 gi|165919973|gb|EDR37274.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990509|gb|EDR42810.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           E1979001]
          Length = 450

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  +  + L+++G +  +    G+++     F  +      +    F V  +
Sbjct: 219 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 278

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +   LE+   +  +A P L     Q+AS   G    Y        A ++   
Sbjct: 279 GGRLLELELSA-LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 337

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P I +  G+  M     ++  T V +  G TI
Sbjct: 338 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 397

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +Q    +PLL+ IP+LGA+FR     +   E+ I  TP L+
Sbjct: 398 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLI 448


>gi|37678398|ref|NP_933007.1| type II secretory pathway, component EpsD [Vibrio vulnificus YJ016]
 gi|37197137|dbj|BAC92978.1| type II secretory pathway, component EpsD [Vibrio vulnificus YJ016]
          Length = 672

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 45/290 (15%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGP------ 226
           + + V+  L+I    QV ++  I E+       +G Q         I  S++G       
Sbjct: 329 ALQDVITQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVM 387

Query: 227 -------------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
                                      + + D+     +  G       L    +  ++ 
Sbjct: 388 VGLEEAKDQTKTEYYTNKDGDRVPYQVTESGDYSTLAAALAGVNGAAMSLVMGDWTALIS 447

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVL 316
           A+   +    L+ P++T +    ASF  G +    T S++         +V   + G+ L
Sbjct: 448 AVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKL 507

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
              P +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +
Sbjct: 508 KVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDE 566

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
              + +  +PLL  IPILG LF+++    E+  + +   P +++     D
Sbjct: 567 RALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTAD 616


>gi|332535166|ref|ZP_08410973.1| type II secretion outer membrane pore forming protein PulD
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035385|gb|EGI71885.1| type II secretion outer membrane pore forming protein PulD
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 687

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 113/286 (39%), Gaps = 47/286 (16%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------- 217
           S + V+  L+I    QV ++  I EV       +G Q                       
Sbjct: 339 SLESVIERLDIR-RAQVLVEAIIIEVMEGDGVNLGLQWISEQGGMLQFNNGTTVPVGSLA 397

Query: 218 -------------SITGSSSGPSKSFA----ADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
                        +I G+ SG    +      D+G       G   +   + +  +  ++
Sbjct: 398 VAAEQAQDVTVTKNIIGTESGTVTPYTETTEGDYGPLASLLSGINGLALGVVKNDWGAII 457

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315
            A+   T    LA P++T +  + AS   G +    T S +         +V   + G+ 
Sbjct: 458 QAVATDTNSNILATPSITTMDNEEASILVGQEVPIITGSQTGSNNANPFQTVERQEVGIK 517

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +     + L I+ EVS  V G  A D+ S   R   TTV    GG +VL GL+ 
Sbjct: 518 LIVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRAIKTTVMADDGGMVVLGGLID 575

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +D+Q+    +PLL  IPILG LFR++   R +  + +   P +++ 
Sbjct: 576 EDVQESVSKVPLLGDIPILGHLFRSTNTTRRKRNLIVFIRPTIIRD 621


>gi|158521058|ref|YP_001528928.1| general secretion pathway protein D [Desulfococcus oleovorans Hxd3]
 gi|158509884|gb|ABW66851.1| general secretion pathway protein D [Desulfococcus oleovorans Hxd3]
          Length = 799

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 140/358 (39%), Gaps = 37/358 (10%)

Query: 99  VILIG---HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           + L+      GK+ +++  L   D   L   L + + +           +     V +  
Sbjct: 314 ITLLDKKVQQGKERIHVYYLKNADAEELAKVL-QMLPEKQGDATAEGKKLA---PVLSKA 369

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
            +  A   + + +  + R+ Y     K+++  L+I     V ++  IAEV  +   ++G 
Sbjct: 370 INITADASTNSLIIMAERDDYL--VLKEIIEKLDIP-RSMVYIECLIAEVNINKDFELGA 426

Query: 216 QH----------------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +                       S TG ++    +      G  V    +  V G ++ 
Sbjct: 427 EWLVGGKGSYDDKDGGYAVGFGGGSDTGYANVARMAMGGLPSGFSVGAMAESIVVGGIEY 486

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309
            +   V+ A ++   ++ L+ P +     Q A+ T G    Y     T SS    ++   
Sbjct: 487 PNLAAVVRAFKKDKDVQILSTPQIMTTDNQEATITVGKNIPYLTKIGTTSSEETYSNYEY 546

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
            D G+ L   P +     I L I+ E+++   +   + D P+   R   T V +    TI
Sbjct: 547 KDVGISLKIKPQINENRLIRLDIEQELTKLDQLTTVSLDRPATLKRGITTNVIVHDEHTI 606

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           V+ GL+ D + +++  +P L  IP LG LF+    + E+T + +  TP ++K     D
Sbjct: 607 VIGGLIDDSMSRVEYKVPCLGDIPFLGWLFKGLSRSSEKTNLLVFLTPHVIKTAREAD 664


>gi|212217864|ref|YP_002304651.1| type 4 pili secretin (outer membrane porin) [Coxiella burnetii
           CbuK_Q154]
 gi|212012126|gb|ACJ19506.1| type 4 pili secretin (outer membrane porin) [Coxiella burnetii
           CbuK_Q154]
          Length = 353

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 122/275 (44%), Gaps = 7/275 (2%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G++     +   V  ++ ++ +   + Y   S   +++ L+I    QV +K  I  +  
Sbjct: 63  SGILSKFGYAAADVRTNQLWILEEQTHIYLIQS---LVSQLDIPI-HQVLIKARIISISD 118

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERA 266
             L  +G       +++  +     D     +  G  D  +    +    +  L ALE+ 
Sbjct: 119 HNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQFGVADIPIIKFKNGQLLDLTLSALEQE 178

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + L+ P L   + Q+A   SG    Y+  +   G TSVT +   + L  TP VL   
Sbjct: 179 GRAQVLSCPELMTNNRQTAIIESGEAIPYQEKTGQ-GNTSVTFNKATLRLKVTPVVLPGN 237

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           RI L++     + +       +P+ + ++  T V + +  T+VL G+ +   QQ + GIP
Sbjct: 238 RILLQLNVNQDK-MSSFLVNGVPTIQTQQLTTKVMVNNQETVVLGGIYEQSTQQEEAGIP 296

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            L KIPILG LFR+ + + E  ++ I  TP ++ P
Sbjct: 297 GLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISP 331


>gi|222053997|ref|YP_002536359.1| general secretion pathway protein D [Geobacter sp. FRC-32]
 gi|221563286|gb|ACM19258.1| general secretion pathway protein D [Geobacter sp. FRC-32]
          Length = 637

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 111/259 (42%), Gaps = 19/259 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--DFGGKFVS 240
           +V+  L+     QV ++  IAEV  D  +++G Q  + G +S  + + A   D  G F +
Sbjct: 345 QVIQKLDRRN-RQVFVQAMIAEVSIDRARELGVQWGVIGGASNGTVATAGIYDPFGTFGA 403

Query: 241 ----------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                      G   S   +    +F  +L AL+   A+  L+ P +     + A    G
Sbjct: 404 LAPIIKSLGEAGIGTSSLNLAGAATFPAILKALQSNGALNVLSTPNIMTSDNKEAEIFVG 463

Query: 291 GQHLYKTVS--SSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
               + T S  SSTG     +   D G+ L   P V     + L I  E+S     +N G
Sbjct: 464 ENVPFLTQSNLSSTGLAQQGIERKDTGITLKIKPMVSEGEYVKLDIYQEISAVKDALNKG 523

Query: 347 DMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
                    R A T+V +    T+V+ GL++D  Q+    IP L  IP+LG LF+     
Sbjct: 524 AAVDITTTKRSAKTSVVVKDTDTVVIGGLIQDQDQETINKIPFLGDIPLLGYLFKTKSMK 583

Query: 405 REETEIFIAATPFLVKPVA 423
           R +T + I  TP+++K   
Sbjct: 584 RTKTNLMIILTPYIIKDSV 602


>gi|77164279|ref|YP_342804.1| general secretion pathway protein D [Nitrosococcus oceani ATCC
           19707]
 gi|254435433|ref|ZP_05048940.1| general secretion pathway protein D [Nitrosococcus oceani AFC27]
 gi|76882593|gb|ABA57274.1| General secretion pathway protein D [Nitrosococcus oceani ATCC
           19707]
 gi|207088544|gb|EDZ65816.1| general secretion pathway protein D [Nitrosococcus oceani AFC27]
          Length = 833

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 110/271 (40%), Gaps = 24/271 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++ TIAEV      Q G +      ++G             +     F+      
Sbjct: 532 PRQVLVEATIAEVTLTDDLQYGVRWFF--ENTGVKDYLGRGALTAAIPGTSTFTYGLFDA 589

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVT 308
             +   VL  L   T ++ L+ P L  +  Q+A    G Q   +T S+        T + 
Sbjct: 590 AGAARIVLDTLSSQTKVKVLSSPQLLVLDNQTAEIRVGDQIPIQTGSTIGIGGNSTTRIQ 649

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------------------IGVNAGDMPS 350
             D GV+L  TP V + GR+ + +  EV++                         G+ P+
Sbjct: 650 FRDTGVLLTVTPRVNAGGRVTMELTQEVTDVGGTKLPTSAAPSGDGDDDNNNQTVGNNPT 709

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R   + V + SG TIVL GL++D+ +    G+P L K+P++G LF  +  ++  TE+
Sbjct: 710 FLQRSFRSVVTVQSGDTIVLGGLIRDNERFSDSGLPFLHKLPLIGPLFGATAKSKSRTEL 769

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
            +  TP +V+      L   +    + + + 
Sbjct: 770 IVLMTPRVVRNQYEARLVTEEFREKLRNASD 800


>gi|257464993|ref|ZP_05629364.1| type II secretory pathway, component HofQ [Actinobacillus minor
           202]
 gi|257450653|gb|EEV24696.1| type II secretory pathway, component HofQ [Actinobacillus minor
           202]
          Length = 442

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 133/338 (39%), Gaps = 22/338 (6%)

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            +   +I++E+    +  T++   A ++  ++ ++     +G V +        E S + 
Sbjct: 102 PVKTAEIVVEKKPIIVTKTIKLQYAKASEVIDSLTKG---NGSVLSDAGYIHFDERSNSL 158

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------- 218
           + +   +   N  S  ++  L+   E Q+ ++  I  +  + L ++G +           
Sbjct: 159 IIKDNPSSIKNMVS--LIKELDKPTE-QIAIEARIVTISSENLHELGVRWGMLSPNTSHS 215

Query: 219 -ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--LDRFSFETVLHALERATAIRTLAEP 275
            + G+  G       +    F   GG  +V  V  ++    +  L ALE+  ++  +A P
Sbjct: 216 RLGGTLEGNGVDSTKNLNVNFPVSGGASAVLQVASINSKVLDLELSALEQENSVEIIASP 275

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L   + + AS   G +  Y      +    V   +  + L  TP +    +I + +   
Sbjct: 276 RLLTTNKKLASIKQGTEIPYAIYDRKSETYDVEFKEAVLGLQVTPHISKDNQILMDLVVT 335

Query: 336 VSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            +      V   +     S   ++ +T V    G TIVL G+ +    +  + +P+L  I
Sbjct: 336 QNSQGQSVVSSTSGNAAVSIDKQELNTQVFAKHGETIVLGGIFQHLKTKDSDRVPVLGSI 395

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           P L  LF   +    + E+ I  TP++++   +  L +
Sbjct: 396 PFLKHLFSYQKDQISKRELVIFVTPYIIQANDINALPQ 433


>gi|241664633|ref|YP_002982993.1| general secretion pathway protein D [Ralstonia pickettii 12D]
 gi|240866660|gb|ACS64321.1| general secretion pathway protein D [Ralstonia pickettii 12D]
          Length = 803

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 122/303 (40%), Gaps = 42/303 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------------------------ 217
           + V++ L+ A   QV ++  I EV      Q+G Q                         
Sbjct: 420 RAVIDDLD-ARRAQVYIESMIVEVTATKASQLGIQWMVGAGGPNTYGGGGTNFGTGSGNL 478

Query: 218 -----SITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFS-FETVLHALERATAIR 270
                +I   ++G   S AA      V+ G  +    GV ++ S    +L AL    ++ 
Sbjct: 479 LTLAGTIATITTGGIGSTAAQTALSSVNVGQLNGGQFGVFNKASGLGALLSALGSDGSVN 538

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTV 322
            L+ P L  +  + A    G      T S +   T        +    D G+ L   P +
Sbjct: 539 VLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGTSASVTPFQTFDRKDVGITLRVKPQI 598

Query: 323 LSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              G + ++I  E S  V G  NA   P+  VR  +T V    G  +VL GLL+D+ Q  
Sbjct: 599 TDGGLVKMQIFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQDG 658

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           ++ +P L  IPILGALFR+    R +T + +   P +++  A    +  D+ Y+   D +
Sbjct: 659 EQKVPGLGDIPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGALSDNRYNYMRDTQ 717

Query: 442 AFF 444
             F
Sbjct: 718 QGF 720


>gi|260773652|ref|ZP_05882568.1| type II secretory pathway component PulD [Vibrio metschnikovii CIP
           69.14]
 gi|260612791|gb|EEX37994.1| type II secretory pathway component PulD [Vibrio metschnikovii CIP
           69.14]
          Length = 536

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 123/325 (37%), Gaps = 35/325 (10%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           ++E     ++  G  +++  + +A  ++        R        ++ +++ ++  + QV
Sbjct: 208 QLESTIGRLIGSGSGQSVMVTPQASVITVRAYPDEIRE------VRQFLDMSHLRIQRQV 261

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL----- 251
            L+  I EV  +   Q G   S T SS+G             VS        G L     
Sbjct: 262 ILEAKILEVTLNDGFQQGINWSKTFSSNGNDYQLGQGVISNPVSSLPGMDAIGTLLGGQT 321

Query: 252 ----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305
                  SF+ VL  +     +  L+ P +TA + Q A    G    Y T  +S   T  
Sbjct: 322 NLVVKSGSFDAVLSFMSTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTDLTSEVGTGD 381

Query: 306 --------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSY--- 351
                    +T    G+ L  TP +   G + L +     EV E    V   D       
Sbjct: 382 NANVAPNIQLTPFFSGISLDVTPQIDDDGYVFLHVHPSVIEVEEQKKSVQFNDRIITLPL 441

Query: 352 ---RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
               +R++D+ +    G  +V+ GL+K +       +P    IP+LG LFR +    ++T
Sbjct: 442 ARSSIRESDSVIRAQDGDVVVIGGLMKSNTMNQTSKVPFFGDIPLLGHLFRQTSNVTQKT 501

Query: 409 EIFIAATPFLVK-PVAMRDLSRPDD 432
           E+ I   P +V      ++L R  D
Sbjct: 502 ELVILLKPTVVGVNTWQKELERSRD 526


>gi|309780546|ref|ZP_07675293.1| general secretion pathway protein D [Ralstonia sp. 5_7_47FAA]
 gi|308920701|gb|EFP66351.1| general secretion pathway protein D [Ralstonia sp. 5_7_47FAA]
          Length = 805

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 122/303 (40%), Gaps = 42/303 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------------------------ 217
           + V++ L+ A   QV ++  I EV      Q+G Q                         
Sbjct: 422 RAVIDDLD-ARRAQVYIESMIVEVTATKASQLGIQWMVGAGGPNTYGGGGTNFGTGSGNL 480

Query: 218 -----SITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFS-FETVLHALERATAIR 270
                +I   ++G   S AA      V+ G  +    GV ++ S    +L AL    ++ 
Sbjct: 481 LTLAGTIATITTGGIGSTAAQTALSSVNVGQLNGGQFGVFNKASGLGALLSALGSDGSVN 540

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTV 322
            L+ P L  +  + A    G      T S +   T        +    D G+ L   P +
Sbjct: 541 VLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGTSASVTPFQTFDRKDVGITLRVKPQI 600

Query: 323 LSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              G + ++I  E S  V G  NA   P+  VR  +T V    G  +VL GLL+D+ Q  
Sbjct: 601 TDGGLVKMQIFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQDG 660

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           ++ +P L  IPILGALFR+    R +T + +   P +++  A    +  D+ Y+   D +
Sbjct: 661 EQKVPGLGDIPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGALSDNRYNYMRDTQ 719

Query: 442 AFF 444
             F
Sbjct: 720 QGF 722


>gi|256823530|ref|YP_003147493.1| general secretion pathway protein D [Kangiella koreensis DSM 16069]
 gi|256797069|gb|ACV27725.1| general secretion pathway protein D [Kangiella koreensis DSM 16069]
          Length = 708

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 123/323 (38%), Gaps = 61/323 (18%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
             V+  L+I    QV ++  I E+  +  K++G Q   +   S  +     +F       
Sbjct: 350 DSVIRALDIR-RKQVHVEAIIVEISDNKAKELGIQWLFSPEGSNTTPGGVVNFTNTGPGI 408

Query: 242 G----GDFSVKGV----------------------------------------------- 250
           G    G  S +G                                                
Sbjct: 409 GQVAAGAISARGTEEEVFTRDPETGEITGTETRRVGGDNGAALAEVLGGMQGLGLGVAKI 468

Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGA 304
             D FS+   + ALE  T   TL+ P++T +    A F SG +    T S+     S   
Sbjct: 469 RPDGFSWGAFIRALEGVTDSNTLSRPSVTTLDNVEAIFKSGQEIPIITGSTLGDNNSNPF 528

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
            +V   D GV+L  TP +     + L I+ EVS      N   +     R+  T+V +P 
Sbjct: 529 QNVERKDVGVMLKLTPQINEGNYVRLDIEQEVSSIAGSTNVDVV--TNKREVKTSVLVPD 586

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA- 423
           GG +VL GL+ DDIQQ  + +P+L  IP+LG  F++ R  + +  + I   P ++K  A 
Sbjct: 587 GGMVVLGGLIDDDIQQSSQKVPILGDIPVLGHAFKSQRTQKIKRNLMIFIHPTVLKDDAE 646

Query: 424 MRDLSRPDDHYSVEDDAKAFFFN 446
           +R+LS     Y      +     
Sbjct: 647 LRELSSAKYSYIRAQQIEQANRG 669


>gi|197336466|ref|YP_002157259.1| general secretion pathway protein D [Vibrio fischeri MJ11]
 gi|197317956|gb|ACH67403.1| general secretion pathway protein D [Vibrio fischeri MJ11]
          Length = 678

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 116/291 (39%), Gaps = 46/291 (15%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----------SITGSSSG--- 225
           + K V+  L+I    QV ++  I E+       +G Q            S TG+S G   
Sbjct: 329 AMKDVIAQLDIR-RAQVLIEALIVELAEGDGVNLGVQWGNLETGAMIQYSNTGASIGATM 387

Query: 226 ---------PSKSFAADFGGKFV----------------SEGGDFSVKGVLDRFSFETVL 260
                     + +   D  GKFV                + GG       +    +  ++
Sbjct: 388 VGLEEAKDTTTTTAVYDENGKFVRNETTTEEGSYDALAGALGGVQGAAVSIMMGDWAALV 447

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315
            A+   +    L+ P++T +    ASF  G +    T S++  +      +V   + G+ 
Sbjct: 448 TAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSSNDNPFQTVDRKEVGIK 507

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ 
Sbjct: 508 LKVVPQINEGDSVRLDIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLID 566

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +   + +  +P L  IP+LG LF+++    E+  + +   P +++     D
Sbjct: 567 ERALESESKVPFLGDIPVLGYLFKSTSTQVEKKNLMVFIKPTIIRNGMTAD 617


>gi|325926645|ref|ZP_08187959.1| general secretion pathway protein D [Xanthomonas perforans 91-118]
 gi|325542997|gb|EGD14446.1| general secretion pathway protein D [Xanthomonas perforans 91-118]
          Length = 763

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 80/329 (24%), Positives = 133/329 (40%), Gaps = 46/329 (13%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            +  + +E+  D V +            AV  + T L +S    +  SS + V+  L++ 
Sbjct: 429 GNGAVTLEVAGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 475

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV ++  +AEV        G       + +  S S    FGG  +      ++ G +
Sbjct: 476 -PMQVHIEAQVAEVNLTGALSYGVNWYFENAVNAASDSTTYGFGGAGLPSAAGRNIWGDI 534

Query: 252 DRF--------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                            +   ++ AL++ T +R L  P++   +   A+   G +    +
Sbjct: 535 AGKVTGTEGLAWSFLGKNAAAIITALDKVTNVRLLQTPSVFVRNNAEATLNVGSRIAINS 594

Query: 298 VSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VI 341
            S +TG       +SV   D GV+L   P V   G + L I  EVS P            
Sbjct: 595 TSINTGIGTDTSYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSPGDRPAACTSATA 654

Query: 342 GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            +NA         R+  T   + SG TI+LAGL+ D      +G+P LSK+P++GALF  
Sbjct: 655 TINAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDTSDGVPFLSKLPVVGALFGT 714

Query: 401 SRFNREETEIFIAATPFLVK-PVAMRDLS 428
                   E+ +  TP +V+ P   R+L+
Sbjct: 715 KGKTSNRREVIVLITPSIVRNPQEARNLT 743


>gi|261856527|ref|YP_003263810.1| type IV pilus secretin PilQ [Halothiobacillus neapolitanus c2]
 gi|261836996|gb|ACX96763.1| type IV pilus secretin PilQ [Halothiobacillus neapolitanus c2]
          Length = 729

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 92/261 (35%), Gaps = 35/261 (13%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------- 242
            QV ++  I     +  +Q+G +  +    +  + +F        V+ G           
Sbjct: 459 KQVLIETRIVIATDNFARQLGVRWGVQAGFNRGNSTFGLGSTAPLVASGTSLPTAGASTG 518

Query: 243 --------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                               G   +  +      +  L AL+       ++ P +   +G
Sbjct: 519 TVGTAPTDWMVNTPISGTPAGSLGLAILGSNVLLDLELSALQSEGTGEIVSSPKVITTNG 578

Query: 283 QSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
            +A  + G +  Y    ++ G  + +V+     +    TP +     I + I  +  EP 
Sbjct: 579 HTALISQGTEIPYIATQTAGGVASNTVSFKKAVLSTEVTPQITPNNNIIMDIDVKKDEPD 638

Query: 341 IG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
               +     P    R+  T VE+ +G T+VL G+ + +       +P    +P +G LF
Sbjct: 639 YTNLLPGTTNPPINTREVKTKVEVKNGETVVLGGIYQFENNNSINKVPFFGDLPGIGNLF 698

Query: 399 RNSRFNREETEIFIAATPFLV 419
           +N     +  E+ I  TP ++
Sbjct: 699 KNKEVKNQRLELLIFVTPKII 719


>gi|34496284|ref|NP_900499.1| type 4 fimbrial biogenesis protein PilQ [Chromobacterium violaceum
           ATCC 12472]
 gi|34102137|gb|AAQ58504.1| type 4 fimbrial biogenesis protein PilQ [Chromobacterium violaceum
           ATCC 12472]
          Length = 697

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 27/269 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------ITGSSSGPS----- 227
           + V+   +I    QV ++  I E   +  + +G + +         I+G+  G +     
Sbjct: 429 RDVITKTDIP-VKQVLIEARIVEATDNWERDLGIKLTYDRMDPKGIISGNPLGTNVNNVT 487

Query: 228 ----------KSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPT 276
                     ++  A       +  G  S    V         L A++     R ++ P 
Sbjct: 488 NLNNNQPYVIQTTPAGVNLPIATPYGTLSALYNVGHSVILGLELQAMQAEDKGRIISSPR 547

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           +     Q AS   G +  Y+  SSS GATSV+     + L+  P +     + + I    
Sbjct: 548 VMTADRQEASIEQGTEIPYQEASSS-GATSVSFKKAVLRLNVKPQITPDNHVIMDITVNK 606

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                       PS    K  T V + +GGT+VL G+ +  +  +   +P L  IP+LGA
Sbjct: 607 DSANFEKTVNGTPSLSTEKIITQVLVENGGTVVLGGIYQQQLNDVINKVPFLGDIPLLGA 666

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMR 425
           LFR+S+   + +E+ I  TP ++  +   
Sbjct: 667 LFRSSQKIDKRSELLIFITPKVINDLVAE 695


>gi|323497014|ref|ZP_08102037.1| general secretion pathway protein D [Vibrio sinaloensis DSM 21326]
 gi|323317858|gb|EGA70846.1| general secretion pathway protein D [Vibrio sinaloensis DSM 21326]
          Length = 675

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 123/338 (36%), Gaps = 58/338 (17%)

Query: 146 VLHGMVRTIQDSQR-------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED---- 194
           VL G+   +Q  +        A        +    N    ++   +MN L          
Sbjct: 283 VLKGVSDNLQAEKSSGKKGTSAKRGEVMIAAHPDTNALVLTAPPDIMNALQDVIAQLDIR 342

Query: 195 --QVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADF---------- 234
             QV ++  I E+       +G Q            G++  P                  
Sbjct: 343 RAQVLIEALIVEMAEGDGINLGVQWGSLETGAMIQYGNTGAPIGQVMVGLEEAKDTETTK 402

Query: 235 -----GGKFV-----SEGGDFSVKGVLDR-----------FSFETVLHALERATAIRTLA 273
                 G+FV     +E GDF+                    +  ++ A+   +    L+
Sbjct: 403 AVYDSDGEFVRNETTTEKGDFTTLAAALSSVNGAALSVVMGDWTALISAVSTDSNSNILS 462

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRI 328
            P++T +    ASF  G +    T S++         +V   + G+ L   P +     +
Sbjct: 463 SPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSV 522

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L+I+ EVS  V+G N      +  R+ +T+V +  G  IVL GL+ +   + +  +PLL
Sbjct: 523 QLKIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVEDGQMIVLGGLIDERALESESKVPLL 581

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
             IP+LG LF+++    E+  + +   P +++     D
Sbjct: 582 GDIPVLGHLFKSTNTQVEKKNLMVFIKPTIIRDGVTAD 619


>gi|312882862|ref|ZP_07742594.1| general secretion pathway protein D [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369381|gb|EFP96901.1| general secretion pathway protein D [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 674

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 122/325 (37%), Gaps = 48/325 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQS---GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
            G  +T    +  V ++    + +           + + V+  L+I    QV ++  I E
Sbjct: 296 SGTKKTQGSKRGDVVIAAHVETNALVLTAPPDIMIALQDVIAQLDIR-RAQVLIEALIVE 354

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-------------------------- 238
           +       +G Q     S +    + +    G+                           
Sbjct: 355 MAEGDGINLGVQWGSLESGASIQFANSGTPIGQVMVGVEEAKEQTSTEYYTDKDGNRQPY 414

Query: 239 -VSEGGDFSVKGVLDR-----------FSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
            V++ GD+S                    +  ++ A+   +    L+ P++T +    AS
Sbjct: 415 NVTKPGDYSTLASALGSVNGAALSVVMGDWMALISAVSTDSNSNILSSPSITVMDNGEAS 474

Query: 287 FTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           F  G +    T S++         +V   + G+ L   P +     + L+I+ EVS  V+
Sbjct: 475 FIVGEEVPVITGSAAGSNNENPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSN-VL 533

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G N      +  R+ +T+V +  G  IVL GL+ +   + +  +PLL  IP LG LF+++
Sbjct: 534 GANGAVDVRFAKRQLNTSVMVEDGQMIVLGGLIDERALESESKVPLLGDIPYLGHLFKST 593

Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426
           R   E+  + +   P +++     D
Sbjct: 594 RTQVEKKNLMVFIKPTIIRDGVTAD 618


>gi|239907473|ref|YP_002954214.1| general secretion pathway protein D precursor [Desulfovibrio
           magneticus RS-1]
 gi|239797339|dbj|BAH76328.1| general secretion pathway protein D precursor [Desulfovibrio
           magneticus RS-1]
          Length = 685

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 105/293 (35%), Gaps = 33/293 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228
            +V+  L+ A   QV ++  I EV  D     G   ++    SG                
Sbjct: 372 DQVVKKLD-APRKQVYVEALIMEVSTDKSVSFGVNLNVANKQSGLGDGKYGGLLFASSNP 430

Query: 229 ----SFAADFGGKFVSEGGDFSVK------GVLDRFSFETVLHALERATAIRTLAEPTLT 278
               S     G      GG           G +   + + +++A +   +   +A P L 
Sbjct: 431 AGYESLYNSSGAFVPPAGGSLGGLAFPVKIGEVIYSNLQAMINASKSDNSFNIIATPQLM 490

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGVVLHFTPTVLSPGRIGLRI 332
            +  + A+ T      Y T      +T+          D G  L  TP +     I L++
Sbjct: 491 TLDNEEATITVAENRPYLTSQDVGQSTTDRPYQRFDYKDVGTTLKVTPQINEGDSIKLKV 550

Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           + E S     V        P+ R R  +TT+   +G TIVL+GL+     +    +P L 
Sbjct: 551 KQETSRIDETVTKETGALQPTTRKRVTETTIMCRNGETIVLSGLIGKSRAEGNSKVPGLG 610

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
            +P++G LF+N     E T +++  TP +  P    D         +E   + 
Sbjct: 611 DVPVVGWLFKNKSVADERTNLYVFITPRITAPGVDSDRLLHAKKMEIERQIEF 663


>gi|224368244|ref|YP_002602407.1| GspD1 [Desulfobacterium autotrophicum HRM2]
 gi|223690960|gb|ACN14243.1| GspD1 [Desulfobacterium autotrophicum HRM2]
          Length = 653

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 70/310 (22%), Positives = 122/310 (39%), Gaps = 33/310 (10%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
               I D  + +    T        +      ++V++ L+I     V ++  I EV  + 
Sbjct: 318 TAPVISDMVKIMADKATNSLIIMAEKEDYPVLEEVIHKLDIP-RAMVYIECLIMEVNVES 376

Query: 210 LKQIGFQHSIT--------------------GSSSGPSKSFAADFGGKFVSEG--GDFSV 247
             ++G Q  I                     GS  G   S AA   G   S G  G    
Sbjct: 377 GFELGTQWQIGDGYDTDSDGNDQGVYFGSFKGSDGGSFTSAAAGGLGSGFSAGIMGKSIT 436

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
            G +   +   V+ A +       L+ P +     + A+ T G    Y+T SS    T++
Sbjct: 437 IGGVSFPTLGAVIQAYQSDKDSHILSTPQILTTDNEEATLTIGKNVPYQTRSSVDNDTTL 496

Query: 308 T--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADT 358
           T          D G+ L  TP +     + L +  E+++       + D P+   RK +T
Sbjct: 497 TTSSYNSYEYKDVGITLKITPQISKDRLVRLNVYQEITKLDSSASQSTDRPTTLKRKIET 556

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           T+ +  G T+V+ GL+ + +   +  +P L  IP L  LF+ +    E+T +++  TP +
Sbjct: 557 TLIVEDGNTVVIGGLIDETLSSSEYKVPCLGDIPGLSYLFKTTSTGDEKTNLYVFLTPRV 616

Query: 419 VK-PVAMRDL 427
           VK P+   +L
Sbjct: 617 VKNPLEASEL 626


>gi|307731499|ref|YP_003908723.1| general secretion pathway protein D [Burkholderia sp. CCGE1003]
 gi|307586034|gb|ADN59432.1| general secretion pathway protein D [Burkholderia sp. CCGE1003]
          Length = 782

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 113/313 (36%), Gaps = 53/313 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+ A   QV ++  I E+  +    +G Q  +  +S     + A       ++ 
Sbjct: 395 RAVIDQLD-ARRAQVYIEALIVELNSNTSGNLGIQWQVANNSIFAGTNLATGQSNSIINL 453

Query: 242 GGDFS-------------------------VKGVLDRFSFETVLHALERATAIRTLAEPT 276
                                         +  +        +L AL +      L+ P 
Sbjct: 454 TTGAVAAGATGGLASAIATQGVQQGLNIGWIHNIFGVQGLGALLQALSQTADANVLSTPN 513

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G     +T S S            +    D G+ LH  P +   G +
Sbjct: 514 LITLDNEEAKIVVGTNIPIQTGSYSNLTSGTASSAFNTYDRVDVGLTLHVKPQITDGGIL 573

Query: 329 GLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L++ TE S  V G          P +  R   +TV   +G  IVL GL++D+ Q     
Sbjct: 574 KLQLYTEDSAIVNGTTNATTNPAGPQFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSK 633

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +PLL  IP +G LFR+ + NR +T + +   P ++                  D A+A  
Sbjct: 634 VPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVIIND---------------RDTAQAVT 678

Query: 445 FNRVNKIYGPKEA 457
            NR + I G + +
Sbjct: 679 SNRYDYIQGVQGS 691


>gi|187925905|ref|YP_001897547.1| general secretion pathway protein D [Burkholderia phytofirmans
           PsJN]
 gi|187717099|gb|ACD18323.1| general secretion pathway protein D [Burkholderia phytofirmans
           PsJN]
          Length = 791

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 112/313 (35%), Gaps = 53/313 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+ A   QV L+  I E+  +    +G Q  +  +S     +         V+ 
Sbjct: 400 RAVIDQLD-ARRAQVYLEALIVELNSNTSGNLGIQWQVANNSIFAGTNLQTGSSNSIVNL 458

Query: 242 GGDFSVKG-------------------------VLDRFSFETVLHALERATAIRTLAEPT 276
                  G                         +        +L AL +      L+ P 
Sbjct: 459 TAAAVAAGSTGGLAGALGNGTLQQGLNIGWIHNIFGVQGLGALLQALSQTADANVLSTPN 518

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G     +T S S            +    D G+ LH  P +   G +
Sbjct: 519 LITLDNEEAKIVVGTNVPIQTGSYSNLTSATATSAFNTYDRVDVGLTLHVKPQITDGGIL 578

Query: 329 GLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L++ TE S  V G N        P +  R   +TV   +G  IVL GL++D+ Q     
Sbjct: 579 KLQLYTEDSAIVTGTNNAATNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSK 638

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +PLL  IP +G LFR+ +  R +T + +   P ++               S    A+A  
Sbjct: 639 VPLLGDIPWIGQLFRSEQKTRNKTNLMVFLRPVII---------------SDRGTAQAVT 683

Query: 445 FNRVNKIYGPKEA 457
            NR + I G + A
Sbjct: 684 SNRYDYIQGVQGA 696


>gi|170694279|ref|ZP_02885433.1| general secretion pathway protein D [Burkholderia graminis C4D1M]
 gi|170140702|gb|EDT08876.1| general secretion pathway protein D [Burkholderia graminis C4D1M]
          Length = 781

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 69/315 (21%), Positives = 116/315 (36%), Gaps = 55/315 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+ A   QV ++  I E+  +    +G Q  +  +S     + A       ++ 
Sbjct: 398 RAVIDQLD-ARRAQVYIEALIVELNSNTSGNLGIQWQVANNSIFAGTNLATGSSNSIINL 456

Query: 242 GG------------------------DFSVKGVLDRFS---FETVLHALERATAIRTLAE 274
                                       +V  + + F       +L AL +      L+ 
Sbjct: 457 TAAAAAAGAAGATGGLANALGSGVQQGLNVGWIHNMFGVQGLGALLQALSQTADANVLST 516

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPG 326
           P L  +  + A    G     +T S S            +    D G+ LH  P +   G
Sbjct: 517 PNLITLDNEEAKIVVGTNIPIQTGSYSNLTSGNASSAFNTYDRVDVGLTLHVKPQITDGG 576

Query: 327 RIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            + L++ TE S  V G          P +  R   +TV   +G  IVL GL++D+ Q   
Sbjct: 577 ILKLQLYTEDSAIVNGTTNATTNPAGPQFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSN 636

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
             +PLL  IP +G LFR+ + NR +T + +   P ++                  D A+A
Sbjct: 637 SKVPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVII---------------GDRDTAQA 681

Query: 443 FFFNRVNKIYGPKEA 457
              NR + I G + A
Sbjct: 682 VTSNRYDYIQGVQGA 696


>gi|260774763|ref|ZP_05883666.1| general secretion pathway protein D precursor [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609325|gb|EEX35477.1| general secretion pathway protein D precursor [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 676

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 130/377 (34%), Gaps = 72/377 (19%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--------------VVLHGMVRTIQDSQRAVELSETF 167
            +   LR+ I   +I +    +                VL G+   +Q  + +     + 
Sbjct: 244 QVRQRLRKLIKQLDIEMATKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKSSGSKQSSS 303

Query: 168 LSQS--------GRNQYANSSSKKVMNLLNIAGED------QVTLKVTIAEVRRDILKQI 213
             +         G N    ++   +MN L            QV ++  I E+       +
Sbjct: 304 AKRGEVMISAHPGTNALVLTAPPDIMNALQDVISQLDIRRAQVLIEALIVEMTEGDGINL 363

Query: 214 GFQHSITGSSSGPSKSFAADFGGKF---------------------------VSEGGDFS 246
           G Q     + +      A    G                             V+E GD+S
Sbjct: 364 GVQWGSLETGAVIQYGNAGTKIGNVMVGLEEAEDQKSTEYYTNSAGERVPYDVTEPGDYS 423

Query: 247 VKGVLDRF-----------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                               +  ++ A+   T    L+ P++T +    ASF  G +   
Sbjct: 424 TLASALSGVNGAALSVVMGDWTALISAVSSDTNSNILSSPSITVMDNGEASFIVGEEVPV 483

Query: 296 KTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-P 349
            T S     +     +V   + G+ L   P +     + L I+ EVS  +   +   +  
Sbjct: 484 ITGSAAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLTIEQEVSNVLPATSNAAVDV 543

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           S+  R+ +T+V +  G  IVL GL+ +  Q+ +  +PLL  IP LG LF+++    +++ 
Sbjct: 544 SFAKRQLNTSVMVEDGQMIVLGGLIDERAQESESKVPLLGDIPYLGRLFKSTSSQLQKSN 603

Query: 410 IFIAATPFLVKPVAMRD 426
           + +   P +++     D
Sbjct: 604 LMVFIKPTIIRDGVTAD 620


>gi|254448307|ref|ZP_05061769.1| general secretion pathway protein D [gamma proteobacterium
           HTCC5015]
 gi|198262174|gb|EDY86457.1| general secretion pathway protein D [gamma proteobacterium
           HTCC5015]
          Length = 694

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 116/308 (37%), Gaps = 31/308 (10%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            V + ++     +     L  +     A  + + V+  L+I    QV ++  I EV    
Sbjct: 314 TVSSDKEVDIQADPGTNSLIITAAPD-ALRNIESVVRQLDIR-RAQVHVEAIIVEVSDTA 371

Query: 210 LKQIGFQHSITGSSS---------------------GPSKSFAADFGGKFVSEGGDFSVK 248
            +++GF +     +                      G + +   D  G  V  G      
Sbjct: 372 ARELGFSYLFANENGFDNETNPVGGALLGGGGDVINGIAAASTGDGSGASVPNGFTVGFG 431

Query: 249 GVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305
              +  + F  +L A+   T    L+ P++  +  + A    G    + T S +T ++  
Sbjct: 432 DRDNSGNVFAGILRAVASDTEANLLSTPSIVTLDNEEAEIVVGQNVPFVTGSYTTASSGA 491

Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
                +V   D GV L  TP +     I L I+ E S  V    A        R+  T+V
Sbjct: 492 NNPFQTVERQDVGVTLKITPQINEGDVIRLDIEQEASSVVESSVASGQLITNKREIKTSV 551

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G  +VL GL+ D  ++    +PLL  IP+LG LF+    + ++  + +   P +++
Sbjct: 552 MIEDGQMLVLGGLIDDQTRKSLFKVPLLGDIPLLGRLFQYRTNSNDKRNLMVFLHPKILR 611

Query: 421 PVAMRDLS 428
                D +
Sbjct: 612 DRLSADAT 619


>gi|254507255|ref|ZP_05119391.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
 gi|219549715|gb|EED26704.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
          Length = 678

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 113/293 (38%), Gaps = 47/293 (16%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------------- 218
           ++ + V++ L+I    QV ++  I E+       +G Q                      
Sbjct: 332 NALQDVISQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAMIQYGNAGAPIGQV 390

Query: 219 ---------------ITGSSSGPSKSF-----AADFGGKFVSEGGDFSVKGVLDRFSFET 258
                          I  S++G  K +       D+     +  G       L    +  
Sbjct: 391 MVGLEEAKDTTEKKPIRDSNTGAIKYYEETTKQGDYSTLAAALAGVNGAAVSLVMGDWTA 450

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYG 313
           ++ A+   +    L+ P++T +    ASF  G +    T S++         +V   + G
Sbjct: 451 LISAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVG 510

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G  IVL GL
Sbjct: 511 IKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVNDGQMIVLGGL 569

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + +   + +  +PLL  IP+LG LF+++    E+  + +   P +++     D
Sbjct: 570 IDERALESESKVPLLGDIPVLGHLFKSTSTQVEKKNLMVFIKPTIIRDGMTAD 622


>gi|153206247|ref|ZP_01945510.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165919273|ref|ZP_02219359.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii RSA 334]
 gi|120577377|gb|EAX34001.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165916996|gb|EDR35600.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii RSA 334]
          Length = 349

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 122/275 (44%), Gaps = 7/275 (2%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G++     +   V  ++ ++ +   + Y   S   +++ L+I    QV +K  I  +  
Sbjct: 59  SGILSKFGYAAADVRTNQLWILEEQTHIYLIQS---LVSQLDIPI-HQVLIKARIISISD 114

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERA 266
             L  +G       +++  +     D     +  G  D  +    +    +  L ALE+ 
Sbjct: 115 HNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQFGVADIPIIKFKNGQLLDLTLSALEQE 174

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + L+ P L   + Q+A   SG    Y+  +   G TSVT +   + L  TP VL   
Sbjct: 175 GRAQVLSCPELMTNNRQTAIIESGEAIPYQEKTGQ-GNTSVTFNKATLRLKVTPVVLPGN 233

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           RI L++     + +       +P+ + ++  T V + +  T+VL G+ +   QQ + GIP
Sbjct: 234 RILLQLNVNQDK-MSSFLVNGVPTIQTQQLTTKVMVNNQETVVLGGIYEQSTQQEEAGIP 292

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            L KIPILG LFR+ + + E  ++ I  TP ++ P
Sbjct: 293 GLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISP 327


>gi|56478233|ref|YP_159822.1| general secretory pathway protein D [Aromatoleum aromaticum EbN1]
 gi|56314276|emb|CAI08921.1| general secretory pathway protein D [Aromatoleum aromaticum EbN1]
          Length = 719

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 77/354 (21%), Positives = 132/354 (37%), Gaps = 52/354 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G         +A  ++   +  +    Y N   + V++LL+     QV ++  IAE+  
Sbjct: 337 SGNASDRGGMIQADPVNNALIIVAPEAIYRN--LRHVIDLLDRR-RAQVYIEALIAEIST 393

Query: 208 DILKQIGFQH-SITGSSSGPSKSF--AADFGG------------KFVSEGGDFSVKG--- 249
           +   + G Q  S     +G S +F    +FGG              V +G +F + G   
Sbjct: 394 ERAAEFGIQWQSANTPGAGSSSTFFGGTNFGGAGQNIIGAAQNIGSVGKGMNFLLGGGTV 453

Query: 250 -------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                  +++ F+   +   LE  +    L+ P+L  +  + A    G    + T   + 
Sbjct: 454 KVPINGQMVEVFNLSLLARFLETDSRTNILSTPSLVTLDNEGAKIVVGRNLPFITGQYTN 513

Query: 303 GA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
                       ++   D G+ L   P +   G I L I  E S  V  ++    P+   
Sbjct: 514 TGGGTTPANPFQTIERRDVGLTLEVRPQISEGGAIRLDIYQEASSVVPTLDDSAGPTTNK 573

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R   +TV +  G  I L GL++DD    +E +PLL  IP  G+LFR     R +T + + 
Sbjct: 574 RSIQSTVLVDDGAIIALGGLVEDDYSSGEEKVPLLGDIPFAGSLFRYDTRRRTKTNLVVF 633

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
             P +++           D YS   +A      R + I G +           G
Sbjct: 634 LRPVILRD---------RDSYSTITNA------RYDYIIGQQRNVAPPNALLHG 672


>gi|156972923|ref|YP_001443830.1| general secretion pathway protein D [Vibrio harveyi ATCC BAA-1116]
 gi|156524517|gb|ABU69603.1| hypothetical protein VIBHAR_00601 [Vibrio harveyi ATCC BAA-1116]
          Length = 658

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 134/375 (35%), Gaps = 75/375 (20%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNI 190
           VL G+   +Q  ++A +   +   +      A+ ++                 V++ L+I
Sbjct: 259 VLKGVSDNLQAEKQAGQNGASSAQRGEVVIAAHEATNSLVLTAQPDIMMALQDVISQLDI 318

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------------------- 224
               QV ++  I E+       +G Q     + +                          
Sbjct: 319 R-RAQVLIEALIVEMSEGDGINLGVQWGNLDTGAVIQYGNTGAQIGNVMVGLEEAKDTTK 377

Query: 225 ----------GPSKSFA-------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                     G S  +         D+     + GG       +    +  ++ A+   +
Sbjct: 378 TESYWDEDANGGSGDWNTREYIEEGDYSTLAAALGGVNGAAMSIMMGDWTALITAVSSDS 437

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTV 322
               L+ P++T +    ASF  G +    T S+S         +V   + G+ L   P +
Sbjct: 438 NSNILSSPSITVMDNGEASFIVGEEVPVITGSTSGSNNDNPFQTVDRKEVGIKLKVVPQI 497

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
                + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + +
Sbjct: 498 NEGDSVQLTIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALESE 556

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
             +PLL  IP++G LF+++    E+  + +   P +++     D              + 
Sbjct: 557 SKVPLLGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIRDGMTADGIT----------QRK 606

Query: 443 FFFNRVNKIYGPKEA 457
           + F R  ++Y  +E 
Sbjct: 607 YNFIRAEQLYKAQEG 621


>gi|119505085|ref|ZP_01627161.1| Helix-turn-helix, AraC type [marine gamma proteobacterium HTCC2080]
 gi|119459067|gb|EAW40166.1| Helix-turn-helix, AraC type [marine gamma proteobacterium HTCC2080]
          Length = 696

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 81/363 (22%), Positives = 135/363 (37%), Gaps = 47/363 (12%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            D   +   L R + + + R++   D         TI+  +    L  T       +   
Sbjct: 297 ADAVEVAEVLTRVMQNMS-RLDTGGDRKPSTNTNSTIEADEGTNALIIT------ADADE 349

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----- 232
            +S + V+  L+I    QV ++  I E+     +++G Q      S     + +      
Sbjct: 350 MASLEAVIARLDIR-RAQVLVEAIIVEMEITEGQELGLQWIFADDSGAFGSNVSTSSAQQ 408

Query: 233 -----------------------DFGGKFVSEGGDFSVKGVL-DRFSFETVLHALERATA 268
                                  D  G      G     GV+ D  S   +L+ALE    
Sbjct: 409 QRNAAIGNALLGDENSNADIGVRDLAGALSQVPGTTLGWGVVGDDLSMSVILNALETQGN 468

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFT 319
              L+ P+L  +  Q A  T G    + T S S             ++   + G+ L  T
Sbjct: 469 ANILSTPSLLTLDNQEAYITVGQNVPFVTGSYSNTGGASNVQNPFQTIERENVGITLKVT 528

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P V     + L I  EVS     + A        RK +T V    G  +VL GL+KDD+Q
Sbjct: 529 PQVNEGDSVVLDIVQEVSSISQQLLAAADVITNERKIETKVMAQDGDVVVLGGLVKDDVQ 588

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVED 438
             ++G+P L  IP+LG LFRN   +  ++ + +   P +V+   ++R  +     Y  + 
Sbjct: 589 DSQQGVPFLQDIPLLGRLFRNDVVSVTKSNLLVFIRPTIVRDDESLRGATAEKYRYIRDQ 648

Query: 439 DAK 441
            A+
Sbjct: 649 QAE 651


>gi|329900875|ref|ZP_08272624.1| General secretion pathway protein D / Type II secretion
           outermembrane pore forming protein (PulD)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549348|gb|EGF33919.1| General secretion pathway protein D / Type II secretion
           outermembrane pore forming protein (PulD)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 696

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 110/287 (38%), Gaps = 31/287 (10%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAADFGGK 237
           V++ L++    QV ++  I EV      + G Q       S +    G + +F+ D    
Sbjct: 359 VIDQLDVR-RAQVYIESLIVEVSAKKAAEFGIQWLGLSGNSTSNYRVGAASTFSTDNIAG 417

Query: 238 FVSEGGDFSVKGVLDRFSFE------------TVLHALERATAIRTLAEPTLTAISGQSA 285
             +     ++  V    +               +  ALE       L+ P L  +  + A
Sbjct: 418 LAAASKAGTIPAVGAGLTLGVFRQINGALGLGALARALESDDGTNILSMPNLITLDNEEA 477

Query: 286 SFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
               G    + T   +T A+          +V   D G+ L   P +   G + + I  E
Sbjct: 478 RIIVGQNVPFITGQYTTQASGGGSGVNPFQTVERKDVGLQLRVRPQISEGGTVKMAIYQE 537

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            S      N   + +   R  DT V +  G  +VL GL++D ++   E +P L  +P++G
Sbjct: 538 TSAVQSSTNTAGIIT-SKRSIDTNVLVDDGQIVVLGGLIEDTLEDGNERVPGLGDLPVVG 596

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
            LF+  + NR +T + +   P +++    + LS   D Y +    + 
Sbjct: 597 NLFKYQKRNRTKTNLMVFLRPTIIR-SNEQSLSLSGDRYDLMRKVQQ 642


>gi|146280952|ref|YP_001171105.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri
           A1501]
 gi|145569157|gb|ABP78263.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri
           A1501]
          Length = 712

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 109/277 (39%), Gaps = 26/277 (9%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
           + Q      ++++  L+I    QV ++  I E   D  K +G +      +     ++  
Sbjct: 433 QTQERLDELRRIVAQLDIP-VRQVMIEARIVEANVDYDKSLGVRWGGNLGAGNKWSAWGK 491

Query: 233 DF---------GGK--------------FVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           +          GG+               V       +  V D    +  L A+E+    
Sbjct: 492 NGNLDIEDGEDGGQQITWPMNTPFVDMGAVGSTSGIGLGFVTDNAILDLQLSAMEKTGNG 551

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  TP +    RI 
Sbjct: 552 EVVSQPKVVTADKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 610

Query: 330 LRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           + ++    EP     A   +P+ R  + +  V +  G TIV+ G+  +   +  + +P L
Sbjct: 611 MEVKVTKDEPDFSQAATTGVPAIRKNEVNAKVLVTDGETIVIGGVFSNTQSKSVDKVPFL 670

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +P LG LFR       ++E+ +  TP ++   +++
Sbjct: 671 GDLPYLGRLFRRDLVQDRKSELLVFITPRIMNNQSIQ 707


>gi|188993080|ref|YP_001905090.1| Type II secretory pathway component [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734840|emb|CAP53051.1| Type II secretory pathway component [Xanthomonas campestris pv.
           campestris]
          Length = 759

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 84/326 (25%), Positives = 132/326 (40%), Gaps = 44/326 (13%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
           ++++ +E+  D V +            AV  + T L ++    +   S + V+  L++  
Sbjct: 431 NASVTLEVEGDKVGVS-----------AVAETNTLLVRTSAQAW--KSIRDVIEKLDVM- 476

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH---------SITGSSSGPSKSFAADFG--GKFVSE 241
             QV ++  IAEV      Q G            S    S GP+   AA  G  G     
Sbjct: 477 PMQVHIEAQIAEVTLTGRLQYGVNWYFENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGS 536

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                V       +   ++ AL++ T +R L  P++   +   A+   G +    + S +
Sbjct: 537 VTSNGVAWTFLGKNAAAIISALDQVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSIN 596

Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------- 347
           TG       +SV   D GV+L   P V   G + L I  EVS P     A          
Sbjct: 597 TGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTTVN 656

Query: 348 ----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                     R+  T   + +G TI+LAGL+ D       GIP LSK+P++GALF     
Sbjct: 657 SAACNVDINTRRVKTEAAVQNGDTIMLAGLIDDSTTDGSNGIPFLSKLPVVGALFGRKTQ 716

Query: 404 NREETEIFIAATPFLVK-PVAMRDLS 428
           N +  E+ +  TP +V+ P   RDL+
Sbjct: 717 NSDRREVIVLITPSIVRNPQDARDLT 742


>gi|146309174|ref|YP_001189639.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
 gi|145577375|gb|ABP86907.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
          Length = 748

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 24/255 (9%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF----- 245
           A   QV ++  I E+  DI   +G Q +I G  +       ++ G    +  G       
Sbjct: 329 APRAQVLVEAAIVEMSGDINDALGVQWAIDGRHNALGGVNFSNTGLSIGTLLGAIARDET 388

Query: 246 ---------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                         L   +F  ++ AL        L+ PTL  +  Q A    G    ++
Sbjct: 389 AELAKTLPNGAIFGLGNDNFGMLITALSATGKSNLLSTPTLLTLDNQPAEILVGQNVPFQ 448

Query: 297 TVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGD 347
           T S +T A       T++   D GV L  TP +     + L I+ E+S   P  G+NA  
Sbjct: 449 TGSYTTDASGAGNPFTTIERKDIGVTLKVTPHINDGATLRLVIEQEISSIAPSTGLNAQA 508

Query: 348 MP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           +      R   +TV    G  IVL GL++DD       +PLL  IP +G LFR++R  R+
Sbjct: 509 VDLVTNKRSIKSTVLADDGQVIVLGGLIQDDTSASASKVPLLGDIPGVGRLFRSTRDARQ 568

Query: 407 ETEIFIAATPFLVKP 421
           +  + +   P + + 
Sbjct: 569 KRNLMVFLRPSVARD 583


>gi|149911025|ref|ZP_01899654.1| putative MSHA biogenesis protein MshL [Moritella sp. PE36]
 gi|149805928|gb|EDM65914.1| putative MSHA biogenesis protein MshL [Moritella sp. PE36]
          Length = 532

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 104/249 (41%), Gaps = 18/249 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L+V I EV  +   + G   ++  S+     SF  +F    +++    +    L 
Sbjct: 263 QRQVLLEVKIMEVTLNDGYKQGIDWNVNNSNVAADSSF--NFSITDITDLASGAGVFTLA 320

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------- 304
              F   +  L+    +  L+ P +TA++ Q A    G    + T  SST +        
Sbjct: 321 GNDFSAAISLLKTQGDVNVLSSPRVTALNNQKAVIKVGSDEYFVTGYSSTKSTSSDDDSI 380

Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPS--YRVRKA 356
                +T    G+ L  TP + S G + L +   + E       V   ++P     VR+ 
Sbjct: 381 EQDVELTPFFSGIALDVTPQIDSDGGVLLHVHPSIIEVTDSNKIVAGIELPLAKSDVRET 440

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT V+  SG  IV+ GL+K   + L   +P L  IP LG LF     + ++TE+ I   P
Sbjct: 441 DTVVKAKSGEIIVIGGLMKTANKDLVSKVPFLGDIPWLGELFTYRSQSVQKTELIILIKP 500

Query: 417 FLVKPVAMR 425
            +V     R
Sbjct: 501 IVVDQNTWR 509


>gi|51591323|emb|CAH22989.1| putative outer membrane secretin family protein [Yersinia
           pseudotuberculosis IP 32953]
          Length = 455

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  +  + L+++G +  +    G+++     F  +      +    F V  +
Sbjct: 224 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 283

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +    E+   +  +A P L     Q+AS   G    Y        A ++   
Sbjct: 284 GGRLLELELSAL-EQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 342

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P I +  G+  M     ++  T V +  G TI
Sbjct: 343 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 402

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +Q    +PLL+ IP+LGA+FR     +   E+ I  TP L+
Sbjct: 403 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLI 453


>gi|24375599|ref|NP_719642.1| MSHA biogenesis protein MshL [Shewanella oneidensis MR-1]
 gi|24350494|gb|AAN57086.1|AE015842_6 MSHA biogenesis protein MshL [Shewanella oneidensis MR-1]
          Length = 560

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 118/296 (39%), Gaps = 23/296 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  +V      ++ V   +  L             +  ++      + QV L+  I EV 
Sbjct: 241 LTAIVGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLSSAESHLQRQVILEAKILEVT 300

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHA 262
                Q G Q        G +        G  +S+    S+ GV    +    F T++  
Sbjct: 301 LSDGYQQGIQWDNVLGHVGNTNINFGTSAGTGLSDKITSSLGGVTSLSIKGSDFNTMISL 360

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312
           L+    +  L+ P +TA + Q A    G    + T  SST   G T VTT          
Sbjct: 361 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 420

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELP 363
           G+ L  TP +   G + L +   V        +  +   + ++P     +R++DT +   
Sbjct: 421 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSNESLELPLAQSEIRESDTVIRAA 480

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           SG  +V+ GL+K +  ++   +PLL  IP +G LF+N    +++TE+ I   P +V
Sbjct: 481 SGDVVVIGGLMKSENIEVVSQVPLLGDIPFVGELFKNRSKQKKKTELIIMLKPTVV 536


>gi|323494823|ref|ZP_08099920.1| type IV pilus assembly protein PilQ [Vibrio brasiliensis LMG 20546]
 gi|323310931|gb|EGA64098.1| type IV pilus assembly protein PilQ [Vibrio brasiliensis LMG 20546]
          Length = 389

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 116/261 (44%), Gaps = 22/261 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------- 229
           ++ K+++  L++A   QV ++  I  V    L+++G +  +  +++  ++          
Sbjct: 129 NAVKQIVRSLDVA-VKQVQIEARIVTVDEGQLEELGVRWGLNQNNNSRNRIAGGIEVNNL 187

Query: 230 --------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                      + G   V+     F +  +      +  L A++       ++ P L   
Sbjct: 188 DQSSLDDRLNVNLGATSVNAASVAFRLATLGSDVLLDLELSAMQTEAKAEVISRPKLMTT 247

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP- 339
           + Q+A    G +  Y   SS  GA+SV      + L  TP +LS  R+ L +      P 
Sbjct: 248 NKQAAYIEQGSEIPYFE-SSENGASSVAFKKAVLSLKVTPQILSDDRLILDLSVTQDRPG 306

Query: 340 -VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            V+   +G+  +   ++ DT V + +G T+VL G+ +  +    + +PL   +P++G+LF
Sbjct: 307 NVVKTGSGEAVAINTQRIDTQVLVNNGQTVVLGGIYQHSVTDAVDKVPLFGDLPLIGSLF 366

Query: 399 RNSRFNREETEIFIAATPFLV 419
           R S  N  ++E+ I  TP +V
Sbjct: 367 RRSYQNIAKSELLIFVTPTIV 387


>gi|322515010|ref|ZP_08068020.1| type IV pilus secretin PilQ [Actinobacillus ureae ATCC 25976]
 gi|322118999|gb|EFX91171.1| type IV pilus secretin PilQ [Actinobacillus ureae ATCC 25976]
          Length = 431

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 106/251 (42%), Gaps = 14/251 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFV 239
           K++  L+   E Q+ ++  I  +  + L+++G +  +   ++G    + S  A+      
Sbjct: 165 KLIRNLDRPTE-QIAIEARIVTISSENLQELGVRWGMFSPANGHHKIAGSLEANGLPNTN 223

Query: 240 SEGGDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
               +F V            ++    +  L ALE+   +  +A P L   + + AS   G
Sbjct: 224 HLNVNFPVNNAASLALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQG 283

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMP 349
            +  Y   +      ++   +  + L  TP + +  +I L +    + P         + 
Sbjct: 284 TEIPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPNSTSSTVHGLV 343

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   ++ +T V    G TIVL G+ +    + ++ +P+L  IP++  LF +S     + E
Sbjct: 344 TIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVIKKLFSHSSDKISKRE 403

Query: 410 IFIAATPFLVK 420
           + I  TP++VK
Sbjct: 404 LVIFVTPYIVK 414


>gi|253689235|ref|YP_003018425.1| general secretion pathway protein D [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755813|gb|ACT13889.1| general secretion pathway protein D [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 640

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 126/350 (36%), Gaps = 45/350 (12%)

Query: 146 VLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYAN----------SSSKKVMNLLNIAGED 194
           VL G+  +IQ D Q A+      +S     Q  +             ++V+  L+I    
Sbjct: 266 VLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP- 324

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKF 238
           QV ++  IAEV+      +G Q +   +      +                     G   
Sbjct: 325 QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAA 384

Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
            +  G F+ +     + ++  ++ AL   +    LA P++  +    A+F  G +     
Sbjct: 385 TTALGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLA 444

Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPS 350
             +T S      +V     G+ L   P +     + L I+ EVS      +        +
Sbjct: 445 GSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLGAT 504

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+V+ GLL     +    +PLL  IP+LG LFR++    ++  +
Sbjct: 505 FNTRTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSQETKKRNL 564

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
            +   P +++  +          Y     +K   FN   +        + 
Sbjct: 565 MLFIRPSIIRDRSQ---------YQSASASKYHSFNAEEEKQREANGGKA 605


>gi|307260659|ref|ZP_07542351.1| hypothetical protein appser12_2340 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869736|gb|EFN01521.1| hypothetical protein appser12_2340 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 432

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 14/251 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFV 239
           +++  L+   E Q+ ++  I  +  + L+++G +  I   ++G    + S  A+      
Sbjct: 166 QLIRNLDKPTE-QIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGSLEANGLPNTN 224

Query: 240 SEGGDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
               +F V            ++    +  L ALE+   +  +A P L   + + AS   G
Sbjct: 225 RLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQG 284

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMP 349
            +  Y   +      ++   +  + L  TP + +  +I L +    + P   G     + 
Sbjct: 285 TEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKKILLDLVVTQNSPNSTGSTLQGLV 344

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   ++ +T V    G TIVL G+ +    + ++ +P+L  IP+L  LF +S     + E
Sbjct: 345 TIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFSHSSDKISKRE 404

Query: 410 IFIAATPFLVK 420
           + I  TP++VK
Sbjct: 405 LVIFVTPYIVK 415


>gi|308535177|ref|YP_002137419.2| type II secretion system protein GspD [Geobacter bemidjiensis Bem]
 gi|308052522|gb|ACH37623.2| type II secretion system protein GspD, putative [Geobacter
           bemidjiensis Bem]
          Length = 640

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 112/273 (41%), Gaps = 19/273 (6%)

Query: 169 SQSGRNQYANSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
            +S  +    +S     NLL +         QV ++  IAEV  +  K++G Q  +   +
Sbjct: 326 DKSTNSLVIMASPTDYQNLLQVIQKLDRRSRQVFVQAMIAEVSANKAKELGLQWGVVTGA 385

Query: 224 SGPSKSFAADFG--GKFVSEGGDFSVKGVLD-------RFSFETVLHALERATAIRTLAE 274
           S  + S    F   G      G  ++ G L           F   L AL+   A+  L+ 
Sbjct: 386 SNGTLSTVGTFDPFGAVAGLTGTLTLAGQLGITPPDAGVALFPATLKALQSNGALNVLST 445

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGL 330
           P +     + A    G    + + ++ T       S+   D G++L   P +     I L
Sbjct: 446 PNIMTSDNKEAEIFVGENVPFLSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYIKL 505

Query: 331 RIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            I  E+S     G           R A T+V + +  T+++ GL++D  Q  +  IPLL 
Sbjct: 506 DIYQEISAVKDFGTATNPNLGSTKRSAKTSVVVKNTDTVIIGGLIQDTDQVTESKIPLLG 565

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            IP+LG LF+  +  R++T + I  TP ++K  
Sbjct: 566 DIPLLGWLFKTKKTTRDKTNLLIMLTPRIIKDA 598


>gi|114564903|ref|YP_752417.1| pilus (MSHA type) biogenesis protein MshL [Shewanella frigidimarina
           NCIMB 400]
 gi|114336196|gb|ABI73578.1| pilus (MSHA type) biogenesis protein MshL [Shewanella frigidimarina
           NCIMB 400]
          Length = 556

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 115/271 (42%), Gaps = 26/271 (9%)

Query: 182 KKVMNLLNIAG---EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +++ + L IA    + QV L+  I EV      Q G Q       +G +    +   G+ 
Sbjct: 270 RQIRSFLQIAESHLQRQVILEAKIIEVTLSDGYQQGIQWENVLGHAGSTNIDFSTSAGQG 329

Query: 239 VSEGGDFSVKGV----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           +S     ++ GV         F T+++ L+    +  L+ P +TA + Q A    G    
Sbjct: 330 LSNAITSAIGGVTSINFTGSDFSTIINLLDTQGDVDVLSSPRVTASNNQKAVIKVGNDEY 389

Query: 295 YKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV- 343
           + T  SST   G T VTT          G+ L  TP +   G + L +   V +      
Sbjct: 390 FVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDEYGNVILHVHPSVIDVTSQTK 449

Query: 344 ------NAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                 +  ++P     +R++DT +   SG  +V+ GL+K +  +    +PLL  IP LG
Sbjct: 450 EIKISDSTLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENIETVSKVPLLGDIPFLG 509

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
             F +   ++++TE+ I   P +V     +D
Sbjct: 510 EAFTSRTKSKKKTELIIMLKPTVVGGDTWKD 540


>gi|119472772|ref|ZP_01614709.1| General secretion pathway protein D [Alteromonadales bacterium
           TW-7]
 gi|119444731|gb|EAW26036.1| General secretion pathway protein D [Alteromonadales bacterium
           TW-7]
          Length = 687

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 123/327 (37%), Gaps = 62/327 (18%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------- 217
           S + V+  L+I    QV ++  I EV       +G Q                       
Sbjct: 339 SLESVIERLDIR-RAQVLVEAIIIEVMEGDGVNLGLQWISEQGGMLQFNNGTTVPVGSLA 397

Query: 218 -------------SITGSSSGPSKSFA----ADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
                        +I G+ SG    +      D+G       G   +   + +  +  ++
Sbjct: 398 VAAEQAQDTTVTQNIIGTESGNVTPYTETTEGDYGPLASLLSGINGLALGVVKNDWGAII 457

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315
            A+   T    LA P++T +  + AS   G +    T S +         +V   + G+ 
Sbjct: 458 QAVATDTNSNILATPSITTMDNEEASILVGQEVPIITGSQTGTNNSNPFQTVERQEVGIK 517

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +     + L I+ EVS  V G  A D+ S   R   TTV    GG +VL GL+ 
Sbjct: 518 LIVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRAIKTTVIADDGGMVVLGGLID 575

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           +D+Q+    +PLL  IP+LG LFR++   R +  + +   P +++               
Sbjct: 576 EDVQESVSKVPLLGDIPVLGHLFRSTNTTRRKRNLIVFIRPTIIRDGV------------ 623

Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEG 462
                    FN+ N I G +   + +G
Sbjct: 624 ---SMNKLSFNKYNFIRGEQTKQQEDG 647


>gi|121634273|ref|YP_974518.1| pilus secretin [Neisseria meningitidis FAM18]
 gi|120865979|emb|CAM09716.1| pilus secretin [Neisseria meningitidis FAM18]
          Length = 589

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 323 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 381

Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 382 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 441

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   S + G +S  T      + L  TP +   G+I + ++     P  
Sbjct: 442 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 501

Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+ 
Sbjct: 502 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 561

Query: 401 SRFNREETEIFIAATPFLV 419
                +  E+ I  TP ++
Sbjct: 562 RGKKTDRRELLIFITPRIM 580


>gi|329894543|ref|ZP_08270351.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC3088]
 gi|328922981|gb|EGG30307.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC3088]
          Length = 691

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 109/270 (40%), Gaps = 34/270 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAAD----- 233
           + +++L++I    QV ++  I   + ++  ++G          +  G + S + D     
Sbjct: 418 RNLIDLVDIPI-RQVMIEARIVIAQSNLDDELGISWGGGHTNNNFFGNALSISGDVENVT 476

Query: 234 ---------FGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRTL 272
                      G     G            G F+V            L ALE       +
Sbjct: 477 NLNQSIIDGLPGSVSLPGSLLVDLGVAEPAGSFAVGFTSKDVFLTAELSALEAVGKGEVV 536

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           ++P +     Q AS  SG +  Y+  SS+ GAT+    +  + L  TP +    RI L +
Sbjct: 537 SQPKVITGDKQKASIKSGTEVPYQE-SSAGGATATQFKEAVLQLDVTPNITPDDRILLDL 595

Query: 333 QTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                     V   N G +P+    +  T V + +G TIVL G+ + +  +    +P+L 
Sbjct: 596 VINQDSIGDLVPSGNGGSIPTIDTTELTTQVLVGNGETIVLGGVFRTEDLEKVSKVPVLG 655

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IPI+G  F++S  +R +TE  I  TP ++
Sbjct: 656 DIPIMGQFFKSSSTSRTKTETLIFITPRIL 685


>gi|59713081|ref|YP_205857.1| general secretion pathway protein D [Vibrio fischeri ES114]
 gi|59481182|gb|AAW86969.1| general secretion pathway protein D [Vibrio fischeri ES114]
          Length = 673

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 116/291 (39%), Gaps = 46/291 (15%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----------SITGSSSG--- 225
           + K V+  L+I    QV ++  I E+       +G Q            S TG+S G   
Sbjct: 325 AMKDVIAQLDIR-RAQVLIEALIVELAEGDGVNLGVQWGNLETGTMIQYSNTGASIGATM 383

Query: 226 ---------PSKSFAADFGGKFV----------------SEGGDFSVKGVLDRFSFETVL 260
                     + +   D  GKF+                + GG       +    ++ ++
Sbjct: 384 VGLEEAKDKTTATAVYDENGKFLRNETTTKEGSYDALAGALGGVQGAAVSIMMGDWKALV 443

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315
            A+   +    L+ P++T +    ASF  G +    T S+S         +V   + G+ 
Sbjct: 444 TAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTSGSNNENPFQTVDRKEVGIK 503

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ 
Sbjct: 504 LKVVPQINEGDSVRLDIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLID 562

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +   + +  +P L  IP+LG LF+++    E+  + +   P +++     D
Sbjct: 563 ERALESESKVPFLGDIPVLGHLFKSTSTRVEKKNLMVFIKPTIIRNGMTAD 613


>gi|33151657|ref|NP_873010.1| competence protein E [Haemophilus ducreyi 35000HP]
 gi|33147878|gb|AAP95399.1| competence protein E [Haemophilus ducreyi 35000HP]
          Length = 419

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 155/432 (35%), Gaps = 34/432 (7%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
           R  F++      S       L       A +++    E  K   +S  ++K   L++   
Sbjct: 2   RILFSLFFFISLSLLAQPLSLSLKNAPTAEILSYLAEENMKNIVLSDQIDKNTTLRIENS 61

Query: 66  VQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
             D +V   +       S R    +Y  G             + K +  +D   +  +  
Sbjct: 62  HFDEIV--ESIVRANQLSKRKEKQIYFIGHL----------KEDKAIEKIDNGDKPKLIT 109

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
             + L    A   I           +G V + Q      E S + + +   +   +  + 
Sbjct: 110 QTIKLDYAKASEVIESLTKGKG---NGNVLSEQGYLYFDERSNSLIIKDSPDSMKHILA- 165

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSF 230
            ++  L+   E Q+ ++  I  +    L+++G +  +   S             G + + 
Sbjct: 166 -LIKNLDKPTE-QIAIEARIVTISSQDLQELGVRWGMFSPSDDYHKVASSLETKGLTTAN 223

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
             +      +          ++    +  L ALE+   +  +A P L   + + AS   G
Sbjct: 224 HLNVNFPVNNATSLALQVARINSRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQG 283

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMP 349
            +  Y   +      ++   +  + L  TP + +  +I L +    + P +   A   + 
Sbjct: 284 AEIPYVLYNRKDEVKNIEFKEAVLGLQVTPHISADNQILLDLVVTQNSPNLNNTAVNGLI 343

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   ++ +T V    G TIVL G+ +    + ++ +PLL  IP+L  LF +S     + E
Sbjct: 344 TIDKQELNTQVFAKHGETIVLGGIFQHLTAKGEDRVPLLGSIPVLKKLFSHSTDKITKRE 403

Query: 410 IFIAATPFLVKP 421
           + I  TP+LV+ 
Sbjct: 404 LVIFVTPYLVQD 415


>gi|89093502|ref|ZP_01166450.1| type 4 fimbrial biogenesis protein PilQ [Oceanospirillum sp. MED92]
 gi|89082192|gb|EAR61416.1| type 4 fimbrial biogenesis protein PilQ [Oceanospirillum sp. MED92]
          Length = 702

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 101/249 (40%), Gaps = 25/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT----------------------GSSSGPSKSFA 231
           +QV ++  +     ++ K +G +                           +++G + +  
Sbjct: 451 EQVLVEARLVNATSNVTKDLGVKWGFGYNDVDNGKGWIVDNSIGNVNFGNTTAGNTSNLM 510

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            D G    S G                 L ALE       +++P +   +G+ A   SG 
Sbjct: 511 VDLGASVTSPGTIAIGFKPGASSLLALELSALETDGKAEIVSQPKVLTTNGKQAKIESGS 570

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           +  Y+TV    G  S+   D  + L  TP +    RI + +          +  G++ S 
Sbjct: 571 EIPYQTV--EDGEVSIEFKDVVLSLDVTPRINPGDRIAMDLLITQDSIGQVLPNGEI-SI 627

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
              +  TTV +P G TIVL G+ K++  +    +PLL  +PI+G LFRN     E+TE+ 
Sbjct: 628 DNNELQTTVVVPDGQTIVLGGVFKNETSETINKVPLLGDLPIMGPLFRNKENQAEKTELL 687

Query: 412 IAATPFLVK 420
           I  TP LV+
Sbjct: 688 IFITPKLVR 696


>gi|300721146|ref|YP_003710414.1| putative transport protein [Xenorhabdus nematophila ATCC 19061]
 gi|297627631|emb|CBJ88152.1| putative transport protein, possibly in biosynthesis of type IV
           pilin (fragment) [Xenorhabdus nematophila ATCC 19061]
          Length = 325

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 6/232 (2%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKFVSEGGDFSVKG 249
             + QV +   I    R+ L ++G    +T      S      +      S+     +  
Sbjct: 93  TPQQQVQIIAHIVTSSREALHELGIHWGVTADPVNRSLGLNRLNLHQPAGSQRHRLVLNT 152

Query: 250 V-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
             +     E  L ALE+   +  +A P LTA     AS   G +  Y         T++ 
Sbjct: 153 ARIHANLLEMELSALEQENQLDIIASPRLTASHQHPASIKQGSEIPYVV--QDKDKTTIQ 210

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGG 366
             +  + +  TP +L  G+I L ++   + P   +     +  +   ++  T V + +G 
Sbjct: 211 FKEAVLGMEVTPHILREGKIRLALKISQNAPGFPVSQGGNENLAIDKQEIMTQVTVRNGE 270

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           T++L G+ +      ++ +P LS IP+LG LF  +       E+ I  TP L
Sbjct: 271 TLILGGIFQQKKVASQQKVPYLSDIPLLGTLFNQNGEQHSRRELVIFITPQL 322


>gi|40644697|emb|CAD91899.1| secretin precursor [Neisseria meningitidis serogroup B]
          Length = 761

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235
           +K+++ L++    QV ++  I E      + +G +   TG       +S       + FG
Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553

Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G               +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 554 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKPKTLANPRVLTQNRK 613

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  +   S + G +S  T      + L  TP +   G+I + ++     P  
Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673

Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+ 
Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733

Query: 401 SRFNREETEIFIAATPFLV 419
                +  E+ I  TP ++
Sbjct: 734 RGKKTDRRELLIFITPRIM 752


>gi|330954627|gb|EGH54887.1| general secretion pathway protein D [Pseudomonas syringae Cit 7]
          Length = 356

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 118/309 (38%), Gaps = 21/309 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEV 205
            G     +    +  ++    S     +   +  K++ + +        QV ++  I EV
Sbjct: 35  SGSGGNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEV 94

Query: 206 RRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFE 257
           +      +G Q  +     +SG + +     G +     G  ++      F      + +
Sbjct: 95  QLTGELDMGVQWYLGRLAGNSGTTGNVTNTSGSQGAIGTGGAALASTDAFFYSFVSNNLQ 154

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHD 311
             L ALE     + L+ P+L  ++ Q A    G        S +T  ++      V    
Sbjct: 155 VALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTDTTLSSVEYVQ 214

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTI 368
            GV+L   P +   G + + IQ +VS      N  D    P    R   T V   SG T+
Sbjct: 215 TGVILDVVPRINPGGLVYMDIQQQVSSADTNANNNDANGNPRISTRSVATQVAAQSGETV 274

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +L GL+K D  +    +P L +IP L  LF N+  +++ TE+ +  TP ++   +     
Sbjct: 275 LLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVI--TSSSQAR 332

Query: 429 RPDDHYSVE 437
           +  D Y  +
Sbjct: 333 QVTDDYRQQ 341


>gi|88704137|ref|ZP_01101852.1| General secretion pathway protein D [Congregibacter litoralis KT71]
 gi|88701964|gb|EAQ99068.1| General secretion pathway protein D [Congregibacter litoralis KT71]
          Length = 696

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 94/470 (20%), Positives = 168/470 (35%), Gaps = 70/470 (14%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK-- 76
             P  A +     +NA +I+ S   I + + I   +++  + +  V      V++     
Sbjct: 167 LVPQQAHMAAYAPSNAIIISDSASNISRIQDIIERMDQSAVQETDVIALRYAVAEDVVRM 226

Query: 77  -----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT----- 126
                A    ++   + +      + N +L+  D  Q   +  L+      LE T     
Sbjct: 227 LEKLNASEAKNNGGEVDVLLVPDKRTNSVLVTGDELQRARIRSLVAYVDTPLEQTGNVKV 286

Query: 127 ----------LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
                     +   +      +  +           +   +  A E + + +  +  ++ 
Sbjct: 287 IYLEYAQATAIAEVLTRVMQNINKLDTGDAKAARASSNTATIEADEGTNSLIITADADEM 346

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSF 230
           A  + + V+  L+I    QV ++  I E+     + +G Q          GSS   S S 
Sbjct: 347 A--ALESVITRLDIR-RAQVLVEAIIVELEVTDGQDLGLQWLFANDSGFYGSSINASDSR 403

Query: 231 AADFGGKFV---SEGGDFSVKGVLD-----------------------RFSFETVLHALE 264
           A +  G  +   S+GG  S  G  D                         S   +L+ALE
Sbjct: 404 ARNIAGAILPPDSDGGTGSTTGDFDVGNLAAALAGSAGLSLGWGVVGEDLSMTVILNALE 463

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVV 315
             +    L+ P+L  +  Q A  T G Q  + T S +             ++   + G+ 
Sbjct: 464 EQSNANILSTPSLLTLDNQEAFITVGQQVPFITGSFTNTGGNNGAQNPFQTIERENVGIT 523

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP----SYRVRKADTTVELPSGGTIVLA 371
           L  TP V     + L I+ EV+                    RK  T V    G  +VL 
Sbjct: 524 LTVTPQVNEGDSVVLEIEQEVNSLTGATLVASAAAADLITNERKIRTKVLAEDGRVVVLG 583

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           GL+KDD+Q  ++ +P+L  IP LG LFRN   +  +T + I   P +++ 
Sbjct: 584 GLIKDDVQSTEQRVPILGDIPYLGRLFRNDAVSVSKTNLMIFIRPTIIRD 633


>gi|307245013|ref|ZP_07527110.1| hypothetical protein appser1_2250 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306854178|gb|EFM86386.1| hypothetical protein appser1_2250 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 429

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 107/251 (42%), Gaps = 14/251 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFV 239
           +++  L+   E Q+ ++  I  +  + L+++G +  I   ++G    + S  A+      
Sbjct: 163 QLIRNLDKPTE-QIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGSLEANGLPNTN 221

Query: 240 SEGGDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
               +F V            ++    +  L ALE+   +  +A P L   + + AS   G
Sbjct: 222 RLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQG 281

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMP 349
            +  Y   S      ++   +  + L  TP + +  +I L +    + P   G     + 
Sbjct: 282 TEVPYVLYSRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPNSTGSTLQGLV 341

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   ++ +T V    G TIVL G+ +    + ++ +P+L  IP+L  LF +S     + E
Sbjct: 342 TIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFSHSSDKISKRE 401

Query: 410 IFIAATPFLVK 420
           + I  TP++VK
Sbjct: 402 LVIFVTPYIVK 412


>gi|149911345|ref|ZP_01899965.1| putative type II secretory pathway, component EpsD [Moritella sp.
           PE36]
 gi|149805585|gb|EDM65588.1| putative type II secretory pathway, component EpsD [Moritella sp.
           PE36]
          Length = 699

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 109/284 (38%), Gaps = 47/284 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGG- 236
           ++V+N L+I    QV ++  I E+        G Q       T  ++G          G 
Sbjct: 335 QQVINQLDIR-RAQVLVEAIIVEISEGDGINFGVQWLSEAGGTQYNNGTQVPLTTIGAGI 393

Query: 237 ----------------------------------KFVSEGGDFSVKGVLDRFSFETVLHA 262
                                               +S     ++  +    SF  ++ A
Sbjct: 394 YDAQDTTTTTTGTDAQGNPTSTTSTTTGDISTLAAALSGVNGLALGVMNSAKSFGAIIQA 453

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317
               +    LA P++  +  Q ASF  G +    T SS++        +V   + G+ L 
Sbjct: 454 SANDSNSNILATPSIMTLDNQEASFIVGEEVPVITGSSASSGNDNPFQTVERREVGIKLT 513

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP +     + L I+ EVS+ +   +     ++  R+ +TT+   SG T+V+ GLL + 
Sbjct: 514 VTPQINEGDAVQLTIEQEVSQVLGSTSVD--VTFAKRQVNTTILADSGQTVVIGGLLDEQ 571

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + +    +P L  IP +G LF+++  + ++  + I     +++ 
Sbjct: 572 VIESVSKVPWLGDIPWIGNLFKSTSSSTKKRNLMIFIKATIIRD 615


>gi|254447504|ref|ZP_05060970.1| type 4 fimbrial biogenesis protein PilQ [gamma proteobacterium
           HTCC5015]
 gi|198262847|gb|EDY87126.1| type 4 fimbrial biogenesis protein PilQ [gamma proteobacterium
           HTCC5015]
          Length = 721

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 103/272 (37%), Gaps = 32/272 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------GSSSGPSKSFAA 232
           + ++  L+I    QV ++  I     D  KQ+G +  +          G+  G S +F  
Sbjct: 449 RSMLQRLDIP-VKQVLIESRIVIASDDFDKQLGSRFGVNRIDPLPVGEGAVFGGSDTFNL 507

Query: 233 ------------------DFGGKFVSEGGDFSVKGVLDRFSF-ETVLHALERATAIRTLA 273
                             +F     S  G F+        +  E  L AL+       ++
Sbjct: 508 QGRQSGGDLNINSRPMNFNFPANAGSSTGQFAFALPTSSGNLLELELSALQAEGKGEIIS 567

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            P +   + + A    G +  Y   +SS GA +V      + L  TP +    RI L + 
Sbjct: 568 TPRVITANQKEAFIEQGVEIPYLEAASS-GAVTVAFKKAVLSLTATPQITPDDRIILDLN 626

Query: 334 TEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            +      + G     +PS   R+ +T V + +G T+VL G+ + +       IP L  I
Sbjct: 627 VKKDNVGEIFGEGEIQVPSIDTREVETQVLVKNGETVVLGGIFEHETLDSVTKIPFLGDI 686

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           P +G LFR       + EI I  TP +V+   
Sbjct: 687 PGIGRLFRREIKQNSKREILIFVTPKIVRDSV 718


>gi|88705191|ref|ZP_01102902.1| GSP-D family Protein [Congregibacter litoralis KT71]
 gi|88700281|gb|EAQ97389.1| GSP-D family Protein [Congregibacter litoralis KT71]
          Length = 728

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 127/328 (38%), Gaps = 49/328 (14%)

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L +  ++    +     +V++     ++  ++ + +L+E                +++++
Sbjct: 415 LFQAGSEDGGSLISSRGSVIVEARTNSLIVTETSAKLAEI---------------RELID 459

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------SITGSSSGPSKSFAA 232
            ++I    QV ++  I   + D+ K++G Q               S+TG ++       +
Sbjct: 460 RVDIPI-RQVMIESRIVIAQSDLEKELGIQWGGGYLEPDANGNILSVTGDATNAVNLNNS 518

Query: 233 DFGGKFV---------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
              G                  S    F+V            L ALE A     +++P +
Sbjct: 519 VINGTQPDLSYPGALLVDLGSGSATSGFAVGFTSSELFLTAELSALEAAGKSEVVSQPKV 578

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
                Q A+  SG +  ++  ++S GAT+V   +  + L  TP +    RI L +     
Sbjct: 579 ITGDKQPATIKSGTEIPFQQAAAS-GATAVQFKEAVLKLDVTPNITPDDRILLDLVINQD 637

Query: 338 EP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                V     G +P+    +  T V + +G T+VL G+ + +  +    +P    +P +
Sbjct: 638 SVGDLVPSGQGGLIPAIDTTQLTTQVLVGNGETVVLGGVFRTENLETTSKVPFFGDLPYV 697

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422
           GALFRN    R +TE  I  TP ++   
Sbjct: 698 GALFRNESSQRTKTETLIFITPRILADT 725


>gi|269103980|ref|ZP_06156677.1| type IV pilus biogenesis protein PilQ [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163878|gb|EEZ42374.1| type IV pilus biogenesis protein PilQ [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 583

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 98/264 (37%), Gaps = 26/264 (9%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---------- 229
           S ++++  L+I    QV ++  I  V    + ++G +  +   +   +            
Sbjct: 320 SIEEIITALDIP-VKQVQIEARIVTVDEGDIDELGVRWGVVNQNGSTTIGGSIEGNLASS 378

Query: 230 ------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                          + G               L     +  L AL+  +    ++ P L
Sbjct: 379 GLLGDDATVDDFLNVNLGAITPGASSIAFQVAKLGDILLDLELSALQAESKAEIISSPRL 438

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + ++A    G +  Y   +SS GA SV      + L  TP +    ++ L +     
Sbjct: 439 VTTNKKAAYIEQGTEIPYLEAASS-GAVSVDFKKAVLSLMVTPQITPDDKLVLDLLVTQD 497

Query: 338 EPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           +    V    G+  +   ++  T V + +G T+VL G+ +  +      +PLL  IP LG
Sbjct: 498 KVGETVVTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIYQHQVNNSVRKVPLLGDIPGLG 557

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LFR+      + E+ I  TP ++
Sbjct: 558 VLFRHKLQEMGKRELLIFVTPKII 581


>gi|119899935|ref|YP_935148.1| type 4 fimbrial biogenesis protein [Azoarcus sp. BH72]
 gi|119672348|emb|CAL96262.1| probable type 4 fimbrial biogenesis protein [Azoarcus sp. BH72]
          Length = 707

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 112/272 (41%), Gaps = 33/272 (12%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------------- 218
            S ++++N +++A   QV ++  I E  ++  + +G +                      
Sbjct: 431 GSLRRLINEIDVA-PRQVLIEARIVEASKEFARDLGVRLGYGDAKDKSLGGGAKLGFGSS 489

Query: 219 --ITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALERAT 267
             ++ +++  +  F  + G    S  G         + ++            L ALE   
Sbjct: 490 EFVSSTTTAGTVDFQRNVGESATSGSGFLPTGFGSLNLTLFNSSLTRFLNLELAALESDG 549

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             R ++ P +   +   AS   G +  Y   SSS GAT+V      + L   P +   GR
Sbjct: 550 RGRVVSSPRVLTANQVEASIEQGTEVPYLQASSS-GATNVAFKKAVLSLKVKPQITPDGR 608

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L I+     P+      ++P    +   + V + +GGT+V+ G+ +++    ++ +P+
Sbjct: 609 LQLSIEVNKDRPLFESAVLNVPPIETKNVKSEVLIDNGGTVVIGGIYEEEETSNEDRVPI 668

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L ++P++G LFR         E+ +  TP +V
Sbjct: 669 LGELPVVGFLFRTRSKISNRKELLVFITPKIV 700


>gi|30250239|ref|NP_842309.1| pilQ; fimbrial type-4 assembly signal peptide protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30181034|emb|CAD86224.1| probable pilQ; fimbrial type-4 assembly signal peptide protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 718

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 106/261 (40%), Gaps = 39/261 (14%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------SGPSKSFAADFGGKFVS 240
            QV ++  I E      + +G +  +  ++             SG   + +   GG    
Sbjct: 449 RQVMIETRIVEATDTFSRNLGARFGVQNATRIGSETNGRRLGISGNLGNSSGLAGGTVSP 508

Query: 241 EGGD----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            GGD                       S+  + +       L ALE  +  R +A P L 
Sbjct: 509 SGGDNLNVNLPAAALAGVAGGPAALGLSLIKINNGTLINLELSALESDSKGRVIASPRLV 568

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
             +   AS   G +  ++T+S +     +      + L  TP +     I +++Q  V++
Sbjct: 569 TANRVEASIEQGTEIPFQTISVTRP--QIQFKKAVLGLKVTPQITPDDNIIMKLQ--VNQ 624

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G N    P+   ++  T V + +GGT+V+ G+ +   +Q +  +PLL  IP+LG LF
Sbjct: 625 DTRGENTPAGPAIDTKQIVTEVLVENGGTVVIGGIFEQVEKQDRNQVPLLGDIPVLGNLF 684

Query: 399 RNSRFNREETEIFIAATPFLV 419
           +N+    ++ E+ I  TP ++
Sbjct: 685 KNTAKRDDKRELLIFVTPRIL 705


>gi|2506491|sp|P31701|GSPD_PECCC RecName: Full=General secretion pathway protein D; AltName:
           Full=Pectic enzymes secretion protein outD; Flags:
           Precursor
          Length = 650

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 118/311 (37%), Gaps = 36/311 (11%)

Query: 146 VLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYAN----------SSSKKVMNLLNIAGED 194
           VL G+  +IQ D Q A+      +S     Q  +             ++V+  L+I    
Sbjct: 276 VLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP- 334

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKF 238
           QV ++  IAEV+      +G Q +   +      +                     G   
Sbjct: 335 QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAA 394

Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
            +  G F+ +     + ++  ++ AL   +    LA P++  +    A+F  G +     
Sbjct: 395 TTALGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLA 454

Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPS 350
             +T S      +V     G+ L   P +     + L I+ EVS      +        +
Sbjct: 455 GSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLGAT 514

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+V+ GLL     +    +PLL  IP+LG LFR++    ++  +
Sbjct: 515 FNTRTVNNAVLVSSGDTVVVGGLLDKSTNESANKVPLLGDIPVLGYLFRSNSTETKKRNL 574

Query: 411 FIAATPFLVKP 421
            +   P +++ 
Sbjct: 575 MLFIRPSIIRD 585


>gi|95928759|ref|ZP_01311505.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135104|gb|EAT16757.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
          Length = 727

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 125/322 (38%), Gaps = 29/322 (9%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            +DI  LE T       + I V    DT  +  ++  +  +Q  V+L E        +  
Sbjct: 417 TKDIKKLEET------RTEIFVINYKDTEAIEDVIDDVLSNQGEVQLIEGSKKIMVNDIP 470

Query: 177 AN-SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------- 228
           +     + ++N L+     QV ++  I E      +  G        +   S        
Sbjct: 471 SKLEEIRMLINQLDEP-VKQVLIEARIVEADTSAEQTFGIHWGFEFDNDSGSSGGGIGSS 529

Query: 229 --SFAADFGGKFVSEGGDFSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLT 278
             +     GG F++        G         LD    +  L ALE +   + ++ P + 
Sbjct: 530 LDNAVVGLGGNFITPTSATDGLGTALTFGRVGLDTIVLDLQLSALESSGGGKVISSPKVM 589

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           A+ G++A    G +  YKT S +   T+       + L  TP +     I L I    S 
Sbjct: 590 ALDGETARIGQGTEIPYKTTSDN--GTTTEFKKAELALEVTPLINPDNTILLEILATNSS 647

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           P  GV   D  +   ++A+T + L +G T V+ G+  ++ Q    G P L  +P +G LF
Sbjct: 648 P--GVAYTDGVAINTKEAETKLLLKNGETTVIGGIYTENEQNSDSGTPYLKDLPFIGNLF 705

Query: 399 RNSRFNREETEIFIAATPFLVK 420
           +    + + TE+ I  TP +V 
Sbjct: 706 KYKTSSNDRTELLIFLTPHIVD 727


>gi|107102654|ref|ZP_01366572.1| hypothetical protein PaerPA_01003719 [Pseudomonas aeruginosa PACS2]
          Length = 658

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 117/266 (43%), Gaps = 23/266 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ + ++  L++    QV ++  I E+  DI   +G Q +I     G +K+  A+ G   
Sbjct: 345 NALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSI 403

Query: 239 VS------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
            +               D ++ G+    SF  ++ AL   T    L+ P+L  +  Q A 
Sbjct: 404 GTLLQSLESNKAPESIPDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAE 462

Query: 287 FTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
              G    ++T S +T +       T+V   D GV L  TP +     + L I+ E+S  
Sbjct: 463 ILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISAL 522

Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            P              R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP+LG L
Sbjct: 523 LPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLLGRL 582

Query: 398 FRNSRFNREETEIFIAATPFLVKPVA 423
           FR+++    +  + +   P +V+  A
Sbjct: 583 FRSTKDTHTKRNLMVFLRPTVVRDSA 608


>gi|152998702|ref|YP_001364383.1| general secretion pathway protein D [Shewanella baltica OS185]
 gi|151363320|gb|ABS06320.1| general secretion pathway protein D [Shewanella baltica OS185]
          Length = 704

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/282 (23%), Positives = 110/282 (39%), Gaps = 45/282 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 337 ESVINQLDIR-RAQVLVEAIIVEVAEGDSVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGV 395

Query: 236 -------GKFVSEGGDFSVKGV------------------------LDRFSFETVLHALE 264
                  G F++      V G                         +    F  ++ A+ 
Sbjct: 396 WQAQDKEGTFITNPSTGQVIGQNPSTKGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVS 455

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFT 319
             T    LA P++T +  Q ASF  G +    T S+++        +V   + GV L   
Sbjct: 456 SDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 515

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL GL+ +++Q
Sbjct: 516 PQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEVQ 573

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  + +P L  IPILG LF++S   + +  + I   P +++ 
Sbjct: 574 ESVQKVPFLGDIPILGHLFKSSSSKKTKKNLMIFIKPTIIRD 615


>gi|225850118|ref|YP_002730352.1| fimbrial assembly protein PilQ [Persephonella marina EX-H1]
 gi|225646446|gb|ACO04632.1| fimbrial assembly protein PilQ [Persephonella marina EX-H1]
          Length = 608

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 91/242 (37%), Gaps = 15/242 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------VS 240
             Q+ ++  I ++     + +G Q     S    +  +    G               V 
Sbjct: 365 PYQIAIEARIVQIESSYKRDLGIQWGFAASGGAGNIGYGVTTGTATGYMFDFPAGNVDVG 424

Query: 241 EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-- 297
           +G   S+  V     S +  L ALE+    R L+ P +  I G+ A  + G +  Y T  
Sbjct: 425 KGASMSIGIVRGLTTSLDIQLSALEQIGKSRILSRPKVITIDGEGAEISQGIEVPYSTFG 484

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            +       V      + L+  P     G I + I+     P  G      P    +   
Sbjct: 485 AAGGAAIARVQFKKALLKLNVIPRTTLDGNIIMNIELTQDVPDFGRAVNGQPPINTKSIT 544

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           + V    G TIV+ G+L+   Q+ + G+P L  +P+ G LF+N   N    E+ I  TP 
Sbjct: 545 SKVIAKDGTTIVIGGILEKTEQETENGVPGLRNVPLFGWLFKNKGINTTNKELLIFITPK 604

Query: 418 LV 419
           ++
Sbjct: 605 II 606


>gi|71280718|ref|YP_271238.1| general secretion pathway protein D [Colwellia psychrerythraea 34H]
 gi|71146458|gb|AAZ26931.1| general secretion pathway protein D [Colwellia psychrerythraea 34H]
          Length = 697

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 159/423 (37%), Gaps = 75/423 (17%)

Query: 91  GKNVGQAN-----VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVE 139
           G   GQ       ++        +++ ++     +A L   L   +  +       ++  
Sbjct: 218 GGKAGQPTFLIPKIVADDRSNSVIVSGEVKARERVARLVKRLDSELESNGNTRVYYLKYS 277

Query: 140 MVSDTV-VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS---------------KK 183
              D V VL G+  +I       +       +   +  A+ S+               + 
Sbjct: 278 KAEDLVKVLQGVSDSIASETTTAKTKTRSSKKRDVSIEAHESTNALVITAQPDMLRSLEA 337

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFG--- 235
           V+  L++    QV ++  I EV       +G Q        T  ++GP+   +   G   
Sbjct: 338 VIRQLDVR-RAQVLVEAIIVEVFESDGVSLGVQWYNEAGGFTQFTNGPASISSVAAGVQA 396

Query: 236 --------------------GKFVSEGGDFSVKGV-----------LDRFSFETVLHALE 264
                                +  S  GD+S+              + +  +  ++ A+ 
Sbjct: 397 AEGEPATKVTTIDANGNPVISENPSTDGDYSILAQVLGNVSGMMFGIAKNDWGAIVSAVS 456

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFT 319
             T    LA P++T +  + A F  G +    T S++         +V   + G+ L  T
Sbjct: 457 SDTNSNILATPSITTLDNEEAYFIVGQEVPIITGSATGSNNANPFQTVDRQEVGIKLRVT 516

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P V     + L I+ EVS  V G    D+ S   R+  TTV   SG T++L GL+ +D+Q
Sbjct: 517 PQVNEGNAVQLIIEQEVSS-VSGTTGVDI-SINKREIKTTVMADSGDTVILGGLIDEDVQ 574

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVED 438
           +  + +P+L  IPI+G LF+++  +  +  + +     +V+  A M ++S    +Y   D
Sbjct: 575 ESVQKVPILGDIPIIGHLFKSTSNSTRKRNLMVFLRATIVRDSALMTEISESKYNYIRAD 634

Query: 439 DAK 441
             +
Sbjct: 635 QIR 637


>gi|294788170|ref|ZP_06753413.1| type IV pilus secretin PilQ [Simonsiella muelleri ATCC 29453]
 gi|294483601|gb|EFG31285.1| type IV pilus secretin PilQ [Simonsiella muelleri ATCC 29453]
          Length = 700

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 113/296 (38%), Gaps = 27/296 (9%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G + T + S R    + T + +           ++++  L++    QV ++  I E   
Sbjct: 401 SGSLLTKRGSARVDPATNTLIVKDTST--VIQEFQRLIEELDVP-ARQVMVETRIVEADV 457

Query: 208 DILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF---------- 256
            + + +G +        +G   ++      + V  G    V  +    +           
Sbjct: 458 SVGRDLGIKLGYARAGRTGVGNTYNNALNNRNVGVGASTGVIDISPNINLPTVATATTAL 517

Query: 257 -----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
                         L A+E     +T++ P +     + A    G Q  Y+T   + G+ 
Sbjct: 518 GLIRSFGSSALSLELSAMEEENRSKTISSPRVLTQDRKEAEIRQGTQIPYQT-RDADGSY 576

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
           +    D  + +  TP +     I L +           +NA   P+  V++  T   + +
Sbjct: 577 TTAFKDAVLSMKVTPRITPDNNIILDVTINKDNVDNTRINADGEPAISVKQVKTQAMVEN 636

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           GGT+V+ G+ ++ I      +PLL  +P+LG LF++   N + +E+    TP +++
Sbjct: 637 GGTLVVGGVYQEQISNNISKVPLLGDVPVLGNLFKSKSRNHQRSEVLFFITPRIIE 692


>gi|224370094|ref|YP_002604258.1| GspD2 [Desulfobacterium autotrophicum HRM2]
 gi|223692811|gb|ACN16094.1| GspD2 [Desulfobacterium autotrophicum HRM2]
          Length = 761

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 107/268 (39%), Gaps = 15/268 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            V+  L++    QV ++VT+AEV  +    +G + +        +        G      
Sbjct: 489 DVLKRLDVL-PRQVLIEVTLAEVTLNDSSSLGVEWTFIKDGGSVADGLIQGTLGSTNVLQ 547

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            +F      +   +   L AL     +  L+ P++ A   + A      +    T     
Sbjct: 548 YNFG-----NTQKWAATLTALASKGDVNILSSPSVLASDNKEAKIDISTEVPVVTTEYKY 602

Query: 303 G-------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV 353
           G       AT++   + GV+L  TP +   G + + I  EVSE    V AG    PS+  
Sbjct: 603 GTDGDDMLATNIQYRNTGVILTVTPHINERGLVSMEINQEVSEQADAVLAGGQEYPSFYK 662

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R   TT+ +    TI + GL++   +    GIPLL+++P    LF  +    E+ E+ I 
Sbjct: 663 RSVQTTLTVNDNQTIAIGGLMRKKEEDSSAGIPLLNQLPFFKYLFGKTAGGNEKNELIIL 722

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
            TP +V  +   D    +    V +  K
Sbjct: 723 ITPRVVSDLDDIDQVTNEFRQRVGNTGK 750


>gi|208811320|ref|ZP_03253080.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817430|ref|ZP_03258459.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4045]
 gi|208823379|ref|ZP_03263696.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395621|ref|YP_002268498.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329885|ref|ZP_03445960.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           TW14588]
 gi|208729950|gb|EDZ79167.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730607|gb|EDZ79306.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4045]
 gi|208736974|gb|EDZ84659.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157076|gb|ACI34510.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4115]
 gi|217317116|gb|EEC25549.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           TW14588]
          Length = 655

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 107/297 (36%), Gaps = 30/297 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+I    QV ++  IAE++      +G Q     +      S          + 
Sbjct: 334 ENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTGLPITTMVQTR 392

Query: 242 GGDF-------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             +               +     + ++  +L AL  ++    LA P++  +    A+F 
Sbjct: 393 QNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFN 452

Query: 289 SGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---I 341
            G +       +T S      +V     G+ L   P +     + L I+ EVS      +
Sbjct: 453 VGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAV 512

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                   ++  R     + + +G T+V+ GLL   I+  +  +PLL  IP+LG LFR  
Sbjct: 513 ATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAK 572

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
                +  + +   P +++           D +      K   FN+       KE +
Sbjct: 573 SEQTAKRNLMLFIRPTIIR---------ERDGFRHASAEKYQSFNQEQVQSRGKETT 620


>gi|218890695|ref|YP_002439559.1| general secretion pathway protein D [Pseudomonas aeruginosa LESB58]
 gi|254236075|ref|ZP_04929398.1| general secretion pathway protein D [Pseudomonas aeruginosa C3719]
 gi|254241802|ref|ZP_04935124.1| general secretion pathway protein D [Pseudomonas aeruginosa 2192]
 gi|126168006|gb|EAZ53517.1| general secretion pathway protein D [Pseudomonas aeruginosa C3719]
 gi|126195180|gb|EAZ59243.1| general secretion pathway protein D [Pseudomonas aeruginosa 2192]
 gi|218770918|emb|CAW26683.1| general secretion pathway protein D [Pseudomonas aeruginosa LESB58]
          Length = 658

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 117/266 (43%), Gaps = 23/266 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ + ++  L++    QV ++  I E+  DI   +G Q +I     G +K+  A+ G   
Sbjct: 345 NALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSI 403

Query: 239 VS------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
            +               D ++ G+    SF  ++ AL   T    L+ P+L  +  Q A 
Sbjct: 404 GTLLQSLESNKAPESIPDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAE 462

Query: 287 FTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
              G    ++T S +T +       T+V   D GV L  TP +     + L I+ E+S  
Sbjct: 463 ILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISAL 522

Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            P              R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP+LG L
Sbjct: 523 LPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLLGRL 582

Query: 398 FRNSRFNREETEIFIAATPFLVKPVA 423
           FR+++    +  + +   P +V+  A
Sbjct: 583 FRSTKDTHTKRNLMVFLRPTVVRDSA 608


>gi|149926612|ref|ZP_01914872.1| pili assembly protein PilQ [Limnobacter sp. MED105]
 gi|149824541|gb|EDM83757.1| pili assembly protein PilQ [Limnobacter sp. MED105]
          Length = 681

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 12/244 (4%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSE 241
           ++N L+     QV ++  +      + + +G +     + + P      D    G FV+ 
Sbjct: 439 IVNGLDKP-VKQVMIEARVVLADTSVSRDLGIRLRALSARADPGFDEVGDQFGSGNFVNT 497

Query: 242 G------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G        +++            L ALE    +RT++ P +   + + A    G +  Y
Sbjct: 498 GVENATNLGYTLFNANSTRLINLQLRALELENKVRTVSNPRVITSNKEPALIEQGTEIPY 557

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           +  +SS GAT+    +  + L  TP +   G + L +  +V++  IG+   + P+   R+
Sbjct: 558 QIATSS-GATATEFKEANLKLAVTPQIAPDGTVLLDV--DVAKDSIGIETSNGPAIDTRR 614

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V +  GGT+VL G+ ++D   L +  P L  IP LG LFR    +R   E+ I  T
Sbjct: 615 VKTKVLVSDGGTVVLGGIFEEDDNVLNDKTPFLGDIPGLGVLFRGKNESRRRAELLIFLT 674

Query: 416 PFLV 419
           P ++
Sbjct: 675 PVVL 678


>gi|193734249|gb|ACF19898.1| PilQ [Kingella kingae]
          Length = 700

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 103/272 (37%), Gaps = 26/272 (9%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------- 217
             NQ      +++++ L++  + QV ++  I E    + + +G +               
Sbjct: 422 TDNQSVIQKFERLIDELDVPAK-QVMVEARIVEAADGVSRSLGVKFGARRNGATSWGGDW 480

Query: 218 ---------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                    S    +S    +F  +      S     SV       +    L A+E    
Sbjct: 481 NNSIALNNRSTNSGTSTGGVAFNPNVNLPVASATSSISVIHSWAAGALGLELSAMETENL 540

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            +T++ P +     + A    G Q  Y T  SS G +S    D  + L  TP +    +I
Sbjct: 541 TKTISTPRVLTQDRKEAEIRQGTQIPY-TTRSSDGDSSTAFKDAVLSLKVTPRITPDSKI 599

Query: 329 GLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            L I     EP    VNA   P    R   T   +  G T+V+ G+ ++ +      +PL
Sbjct: 600 ILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATLVVGGIYQEQMANNVSKVPL 659

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  IP+LG LF++   +R   E+    TP ++
Sbjct: 660 LGDIPVLGNLFKSRSRSRSRNELLFFITPRIM 691


>gi|126207688|ref|YP_001052913.1| type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae L20]
 gi|165975656|ref|YP_001651249.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|190149472|ref|YP_001967997.1| type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307258421|ref|ZP_07540162.1| hypothetical protein appser11_2240 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|126096480|gb|ABN73308.1| type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875757|gb|ABY68805.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|189914603|gb|ACE60855.1| type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306867605|gb|EFM99452.1| hypothetical protein appser11_2240 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 432

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 14/251 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFV 239
           +++  L+   E Q+ ++  I  +  + L+++G +  I   ++G    + S  A+      
Sbjct: 166 QLIRNLDKPTE-QIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGSLEANGLPNTN 224

Query: 240 SEGGDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
               +F V            ++    +  L ALE+   +  +A P L   + + AS   G
Sbjct: 225 RLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQG 284

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMP 349
            +  Y   +      ++   +  + L  TP + +  +I L +    + P   G     + 
Sbjct: 285 TEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPNSTGSTLQGLV 344

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   ++ +T V    G TIVL G+ +    + ++ +P+L  IP+L  LF +S     + E
Sbjct: 345 TIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFSHSSDKISKRE 404

Query: 410 IFIAATPFLVK 420
           + I  TP++VK
Sbjct: 405 LVIFVTPYIVK 415


>gi|15598301|ref|NP_251795.1| general secretion pathway protein D [Pseudomonas aeruginosa PAO1]
 gi|544439|sp|P35818|GSPD_PSEAE RecName: Full=General secretion pathway protein D; Flags: Precursor
 gi|9949215|gb|AAG06493.1|AE004734_11 general secretion pathway protein D [Pseudomonas aeruginosa PAO1]
 gi|431185|emb|CAA48582.1| XcpQ [Pseudomonas aeruginosa PAO1]
          Length = 658

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 117/266 (43%), Gaps = 23/266 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ + ++  L++    QV ++  I E+  DI   +G Q +I     G +K+  A+ G   
Sbjct: 345 NALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSI 403

Query: 239 VS------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
            +               D ++ G+    SF  ++ AL   T    L+ P+L  +  Q A 
Sbjct: 404 GTLLQSLESNKAPESIPDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAE 462

Query: 287 FTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
              G    ++T S +T +       T+V   D GV L  TP +     + L I+ E+S  
Sbjct: 463 ILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISAL 522

Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            P              R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP+LG L
Sbjct: 523 LPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLLGRL 582

Query: 398 FRNSRFNREETEIFIAATPFLVKPVA 423
           FR+++    +  + +   P +V+  A
Sbjct: 583 FRSTKDTHTKRNLMVFLRPTVVRDSA 608


>gi|317494398|ref|ZP_07952812.1| type IV pilus secretin PilQ [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917648|gb|EFV38993.1| type IV pilus secretin PilQ [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 437

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 13/247 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAADFGGKFVSEGGD 244
           QV L   I  + R+ L ++G +    GS    S            F      +  S    
Sbjct: 191 QVQLTAHIVTINRESLNELGVRWGTAGSDETTSSDSDSSNFRLNQFNMGLPAEGRSFNAG 250

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F +  +  R     +    +    +  +A P L A + Q+AS   G +  Y+  S ++G+
Sbjct: 251 FQIARIGGRLLELELSALEQEDN-VEIIASPHLMATNLQTASIKQGTEIPYEVSSGASGS 309

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVEL 362
           TS+   +  + +  TP V+  G+I L +Q   + P   +  GD  +     ++  T V L
Sbjct: 310 TSIEFKEAVLGMEVTPRVMRNGKITLTLQITQNMPGRSIKQGDGEALAIDKQEIKTQVTL 369

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
             G T++L G+ +      K  +P L  IP+LGALFR+S    +  E+ I  TP LVK  
Sbjct: 370 SDGDTVILGGIFQRQTTHGKTQVPKLGDIPLLGALFRDSTDASKRRELVIFITPKLVKTE 429

Query: 423 AMRDLSR 429
               L R
Sbjct: 430 TPSSLLR 436


>gi|320352793|ref|YP_004194132.1| general secretion pathway protein D [Desulfobulbus propionicus DSM
           2032]
 gi|320121295|gb|ADW16841.1| general secretion pathway protein D [Desulfobulbus propionicus DSM
           2032]
          Length = 752

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 117/306 (38%), Gaps = 29/306 (9%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK------VMNLLNIAGEDQVTLKVTI 202
           G   +   +    +  +    +           ++      V+  L+I     V L+  I
Sbjct: 320 GKASSAPSAPAISKEVKVVADKETNALIITGPREEYEVVEGVIKKLDIP-RRMVYLEALI 378

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSVKGVLDRF---- 254
            EV+      IG Q +    S     S  A    +   +  +  G       L       
Sbjct: 379 MEVKVSKDFSIGVQWANADGSVVGGFSGNASSPYNMLKQMTTSPGSLPAGFTLGVLEEGI 438

Query: 255 --------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
                   +   V++A +    +  +A P +     + AS   G    Y T  ++T A  
Sbjct: 439 KIGDVVFPNLGAVVNAYKSDDDVNVIATPQILTTDNKKASIKVGENVPYITSKNTTDAEQ 498

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
             T+    D    L  TP V     + L I  EV   +    A D PS   R A+TTV +
Sbjct: 499 DYTNYEYKDVATSLTITPQVNQAEVVRLEIGVEV-IKLKNTEATDTPSTFTRTAETTVVV 557

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-P 421
            +  T+V+ G++  D    +  +P+L  IP+LG +F++   ++E+T ++I  TP +V+ P
Sbjct: 558 HNEQTVVIGGMIGQDTTSGEYKVPVLGDIPVLGWMFKSRSNSQEKTNLYIFITPHIVENP 617

Query: 422 VAMRDL 427
             + DL
Sbjct: 618 AEIADL 623


>gi|313108415|ref|ZP_07794431.1| general secretion pathway protein D [Pseudomonas aeruginosa 39016]
 gi|310880933|gb|EFQ39527.1| general secretion pathway protein D [Pseudomonas aeruginosa 39016]
          Length = 658

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 23/266 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ + ++  L++    QV ++  I E+  DI   +G Q +I     G +K+  A+ G   
Sbjct: 345 NALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSI 403

Query: 239 VS------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
            +               D ++ G+    SF  ++ AL   T    L+ P+L  +  Q A 
Sbjct: 404 GTLLQSLESNKAPESIPDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAE 462

Query: 287 FTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
              G    ++T S +T +       T+V   D GV L  TP +     + L I+ E+S  
Sbjct: 463 ILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISAL 522

Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            P              R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP LG L
Sbjct: 523 LPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFLGRL 582

Query: 398 FRNSRFNREETEIFIAATPFLVKPVA 423
           FR+++    +  + +   P +V+  A
Sbjct: 583 FRSTKDTHTKRNLMVFLRPTVVRDSA 608


>gi|186474451|ref|YP_001863422.1| general secretion pathway protein D [Burkholderia phymatum STM815]
 gi|184198410|gb|ACC76372.1| general secretion pathway protein D [Burkholderia phymatum STM815]
          Length = 717

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 114/319 (35%), Gaps = 59/319 (18%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--AADFGGKFV 239
           + V++ L+     QV ++  I E+       +G Q      S+G +     +++F     
Sbjct: 374 RSVIDQLDSR-RAQVYIEALIVELSATSSANLGIQWQGALLSNGGNNGLYGSSNFNSNGS 432

Query: 240 SEGGDFSVKG------------------------------VLDRFSFETVLHALERATAI 269
               + + +G                                + F    +L AL +++  
Sbjct: 433 QGIVNLTAQGAIIANNPAAALATTGTNLLNNGLNVGLLHRFGNVFGLGGLLQALSQSSDA 492

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----------TSVTTHDYGVVLHFT 319
             L+ P L  +  + A    G      T S +T             +    D G+VLH  
Sbjct: 493 NILSTPNLITLDNEEAKIVVGSNVPVVTGSYATPTANAATSVTAFNTFDRQDVGIVLHVK 552

Query: 320 PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G I L+I +E S       N     +   R   +TV    G  IVL GL++D+ 
Sbjct: 553 PQITDGGIIKLQIYSEDSSVDPTSTNNPGGVTIIKRSVQSTVLSDDGEIIVLGGLMQDNY 612

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
                 +PLL  +P +G LFR+   +R +T + +   P ++                  D
Sbjct: 613 SNGNSKVPLLGDVPWIGQLFRSEEKSRTKTNLMVFLRPVIIND---------------WD 657

Query: 439 DAKAFFFNRVNKIYGPKEA 457
            A+A   NR + I G + A
Sbjct: 658 TAQAVTSNRYDYIQGVQGA 676


>gi|332973070|gb|EGK11007.1| type IV pilus biogenesis protein PilQ [Kingella kingae ATCC 23330]
          Length = 700

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 103/272 (37%), Gaps = 26/272 (9%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------- 217
             NQ      +++++ L++  + QV ++  I E    + + +G +               
Sbjct: 422 TDNQSVIQKFERLIDELDVPAK-QVMVEARIVEAADGVSRSLGVKFGARRNGATSWGGDW 480

Query: 218 ---------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                    S    +S    +F  +      S     SV       +    L A+E    
Sbjct: 481 NNSIALNNRSTNSGTSTGGVAFNPNVNLPVASATSSISVIHSWAAGALGLELSAMETENL 540

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            +T++ P +     + A    G Q  Y T  SS G +S    D  + L  TP +    +I
Sbjct: 541 TKTISTPRVLTQDRKEAEIRQGTQIPY-TTRSSDGDSSTAFKDAVLSLKVTPRITPDSKI 599

Query: 329 GLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            L I     EP    VNA   P    R   T   +  G T+V+ G+ ++ +      +PL
Sbjct: 600 ILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATLVVGGIYQEQMANNVSKVPL 659

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  IP+LG LF++   +R   E+    TP ++
Sbjct: 660 LGDIPVLGNLFKSRSRSRSRNELLFFITPRIM 691


>gi|261250571|ref|ZP_05943146.1| type II secretory pathway component EpsD [Vibrio orientalis CIP
           102891]
 gi|260939140|gb|EEX95127.1| type II secretory pathway component EpsD [Vibrio orientalis CIP
           102891]
          Length = 654

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 111/310 (35%), Gaps = 51/310 (16%)

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGED------QVTLKVTIAEVRRDILKQIGFQHS-- 218
             +  G N    ++   +MN L            QV ++  I E+       +G Q    
Sbjct: 290 IAAHPGTNALVLTAPPDIMNALQDVIAQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNL 349

Query: 219 -----ITGSSSGPSKSFA--------------------------------ADFGGKFVSE 241
                I  S++G S                                     D+     + 
Sbjct: 350 ETGAMIQYSNTGASVGQVMVGLEEAKDTTTTTAVYDSDGKFLRNETTTEEGDYSTLASAL 409

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G        +    +  ++ A+   +    L+ P++T +    ASF  G +    T S+S
Sbjct: 410 GSVNGAALSIAMGDWTALISAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTS 469

Query: 302 TGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
                    +V   + G+ L   P +     + L I+ EVS  V+G N      +  R+ 
Sbjct: 470 GSNNENPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQL 528

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T+V +  G  IVL GL+ +   + +  +P+L  IP LG LF+++    E+  + +   P
Sbjct: 529 NTSVMVEDGQMIVLGGLIDERALESESKVPILGDIPYLGHLFKSTSTQVEKKNLMVFIKP 588

Query: 417 FLVKPVAMRD 426
            +++     D
Sbjct: 589 TIIRDGMTAD 598


>gi|28896907|ref|NP_796512.1| general secretion pathway protein D [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365906|ref|ZP_05778400.1| general secretion pathway protein D [Vibrio parahaemolyticus K5030]
 gi|260877807|ref|ZP_05890162.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AN-5034]
 gi|260895544|ref|ZP_05904040.1| general secretion pathway protein D [Vibrio parahaemolyticus
           Peru-466]
 gi|260902568|ref|ZP_05910963.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AQ4037]
 gi|28805115|dbj|BAC58396.1| general secretion pathway protein D precursor [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088533|gb|EFO38228.1| general secretion pathway protein D [Vibrio parahaemolyticus
           Peru-466]
 gi|308089966|gb|EFO39661.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AN-5034]
 gi|308109694|gb|EFO47234.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AQ4037]
 gi|308113427|gb|EFO50967.1| general secretion pathway protein D [Vibrio parahaemolyticus K5030]
          Length = 675

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 125/341 (36%), Gaps = 62/341 (18%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNI 190
           VL G+   +Q  ++A +   +   +      A+ ++                 V++ L+I
Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGDVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------ 238
               QV ++  I E+       +G Q     + +      A    G+             
Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGSLETGAVIQYGNAGAPIGQVMVGLEEAKDTVE 399

Query: 239 -----------------VSEGGDFSVKGV-----------LDRFSFETVLHALERATAIR 270
                             +  GD+S               +    +  ++ A+   +   
Sbjct: 400 KKPIRDSDTGAIKYYEETTTKGDYSTLASALKNVNGAAMSIVMGDWTALVSAVASDSNSN 459

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSP 325
            L+ P++T +    ASF  G +    T S++         +V   + G+ L   P +   
Sbjct: 460 ILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEG 519

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
             + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   + +  +
Sbjct: 520 DSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKV 578

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           PLL  IP+LG LF+++    ++  + +   P +++     D
Sbjct: 579 PLLGDIPVLGHLFKSTSTQTQKRNLMVFIKPTIIRDGMTAD 619


>gi|116051101|ref|YP_790068.1| general secretion pathway protein D [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586322|gb|ABJ12337.1| general secretion pathway protein D [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 658

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 23/266 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ + ++  L++    QV ++  I E+  DI   +G Q +I     G +K+  A+ G   
Sbjct: 345 NALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSI 403

Query: 239 VS------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
            +               D ++ G+    SF  ++ AL   T    L+ P+L  +  Q A 
Sbjct: 404 GTLLQSLESNKAPESIPDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAE 462

Query: 287 FTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338
              G    ++T S +T +       T+V   D GV L  TP +     + L I+ E+S  
Sbjct: 463 ILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISAL 522

Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            P              R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP LG L
Sbjct: 523 LPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFLGRL 582

Query: 398 FRNSRFNREETEIFIAATPFLVKPVA 423
           FR+++    +  + +   P +V+  A
Sbjct: 583 FRSTKDTHTKRNLMVFLRPTVVRDSA 608


>gi|163751006|ref|ZP_02158238.1| MSHA biogenesis protein MshL [Shewanella benthica KT99]
 gi|161329296|gb|EDQ00294.1| MSHA biogenesis protein MshL [Shewanella benthica KT99]
          Length = 560

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 108/264 (40%), Gaps = 25/264 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-- 250
            QV ++  I EV      Q G    ++ G        F    GG  +S+     + GV  
Sbjct: 280 RQVIIEAKILEVTLSDGYQQGINWQNVLGHVGDTDIEFGTSTGGGSLSDQITSVIGGVTS 339

Query: 251 --LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GAT 305
                 +F T++  L+    +  L+ P +T ++ Q A    G    + T  SST   G T
Sbjct: 340 LKFSGTNFSTMISLLDTQGDVDVLSSPRVTVLNNQKAVIKVGTDEYFVTNVSSTTISGIT 399

Query: 306 SVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------ 352
            +TT +        G+ L  TP +   G + L I   V      +    +          
Sbjct: 400 PITTPEVELTPFFSGIALDVTPQIDGDGNVILHIHPSVINIKEQIKTIKISGSTLELPLA 459

Query: 353 ---VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R++DT +   SG  +V+ GL+K +  +L   +PLL  IP +G LF N   + ++TE
Sbjct: 460 RSDIRESDTVIMARSGDVVVIGGLMKSENIELISKVPLLGDIPFIGELFTNRAKSLKKTE 519

Query: 410 IFIAATPFLVK-PVAMRDLSRPDD 432
           + I   P +V      ++L R  D
Sbjct: 520 LVILLKPTVVGVDTWKKELQRSKD 543


>gi|294339205|emb|CAZ87559.1| Putative Type IV pilus biogenesis secretin PilQ [Thiomonas sp. 3As]
          Length = 746

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 126/351 (35%), Gaps = 49/351 (13%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY--- 176
            A +   L                 V+L G+  +   + R +    T L+    NQ    
Sbjct: 397 AATVVAMLTGAAGGVQSGTTATPSPVLLPGLSSSAAPTSRILSPRGTVLADPRTNQIFVT 456

Query: 177 -ANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSS------SGPS 227
              S  ++V  L+    +   QV ++  I E      + +G +     ++      + P 
Sbjct: 457 DIPSKLEEVAQLIAKIDKPVRQVMIEARIVEASDQFGRSLGVKLGFLNNNLPGTGGNTPG 516

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSF------------------------------- 256
            S + D+ G     G + +    +    F                               
Sbjct: 517 VSVSGDYLGVSQQTGQNNATGATVTDSQFVNLPAFGLAGSLLAGATPSSLGISLFNAAAN 576

Query: 257 ---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 L A+E     + ++ P +       A+   G +  Y+  +SS GAT+VT     
Sbjct: 577 RFINLELSAMEADGKGKIISSPRVITADLSKATIEQGTEIPYQQATSS-GATAVTFKKAV 635

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L  TP +   G + + ++     P  G +   +PS       T V++ +GGT+VL G+
Sbjct: 636 LSLDVTPQITPDGNVIMNVEIHKDSP--GASTAGVPSINTNTVATQVQVENGGTVVLGGI 693

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
                Q   + +PLL  IP+LG LF+N+     + E+ +  TP +V    +
Sbjct: 694 YTSQEQNQTDKVPLLGDIPVLGNLFKNNSKMYNKNELMVFLTPKIVTSADL 744


>gi|295678175|ref|YP_003606699.1| general secretion pathway protein D [Burkholderia sp. CCGE1002]
 gi|295438018|gb|ADG17188.1| general secretion pathway protein D [Burkholderia sp. CCGE1002]
          Length = 811

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/316 (21%), Positives = 113/316 (35%), Gaps = 56/316 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+ A   QV ++  I E+  +    +G Q  +  +S     +         ++ 
Sbjct: 399 RAVIDQLD-ARRAQVYIEALIVELNSNTSGNLGIQWQVANNSLFAGTNLQTGSSNSIINL 457

Query: 242 GGDFS----------------------------VKGVLDRFSFETVLHALERATAIRTLA 273
               +                            +  +        +L AL +      L+
Sbjct: 458 TAAAAAAGATGATGGAALVSGLSGLQQGLNVGWIHNIFGVQGLGALLQALSQTADANVLS 517

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSP 325
            P L  +  + A    G     +T S S   +  T          D G+ LH  P +   
Sbjct: 518 TPNLITLDNEEAKIIVGTNVPIQTGSYSNLTSGTTSAAFNTFDRVDVGLTLHVKPQITDG 577

Query: 326 GRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           G + L + TE S  V G N        P +  R   +TV   +G  IVL GL++D+ Q  
Sbjct: 578 GILKLLLYTEDSAIVNGTNNAATNPAGPEFTKRSIQSTVLCDNGEIIVLGGLMQDNYQVS 637

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  IP LG LFR+ +  R +T + +   P ++               +  D  +
Sbjct: 638 NSKVPLLGDIPWLGQLFRSEQKTRNKTNLMVFLRPVIL---------------ADRDTTQ 682

Query: 442 AFFFNRVNKIYGPKEA 457
           A   NR + I G + A
Sbjct: 683 AVTANRYDYIQGVQGA 698


>gi|303229539|ref|ZP_07316327.1| bacterial type II and III secretion system protein [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515664|gb|EFL57618.1| bacterial type II and III secretion system protein [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 399

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 142/348 (40%), Gaps = 42/348 (12%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER---DIAHLEMTLRRFIADSNI 136
           ++H    MY F     Q  V + GH G +     +++E        LE  ++  + +   
Sbjct: 86  MLHHLGDMYHFDIQDDQGVVTVTGHSGAKEHRHVVVVEPKMASSTSLESVIKTVVPNGKF 145

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            V   ++ +VL+      +     ++  +  +                          QV
Sbjct: 146 AVHKETNQIVLNVTGDEEKGVNSIIQSVDRDMK-------------------------QV 180

Query: 197 TLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            L+ TI  +     K+ GF+ S    TG     + S+ A   GK           G   +
Sbjct: 181 RLEATIMAMEHSYTKETGFRWSWLSLTGHGKDKTNSYGAISFGKAPD--------GEAYK 232

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHD 311
           F  +  L  LE +     +A P++ A++G++A    G +      S S G    S+   +
Sbjct: 233 FFVKPELSLLETSGKAVVIATPSIMALNGEAAHILIGERIPVIEESISNGERKRSIHYEE 292

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            G+ L +TP V   G I   I+ EVS P++ V+         R+A T V L  G  +V+ 
Sbjct: 293 VGIKLDYTPVVTKNGTIDTSIRAEVSSPIM-VSEMKSYKITTRQAQTRVRLQPGEVLVIG 351

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GL+ +  Q+  E IP+L  IP+LG LFR+SR  ++  E+ I     +V
Sbjct: 352 GLMDNRDQKQIEKIPILGDIPLLGKLFRHSRKTKDSVEMVILVKATVV 399


>gi|255658549|ref|ZP_05403958.1| putative type IV pili biogenesis protein PilQ [Mitsuokella
           multacida DSM 20544]
 gi|260849353|gb|EEX69360.1| putative type IV pili biogenesis protein PilQ [Mitsuokella
           multacida DSM 20544]
          Length = 430

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 94/424 (22%), Positives = 161/424 (37%), Gaps = 58/424 (13%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT----- 86
           A AA I +  VE         G  + ++L +     + +V D + A  V           
Sbjct: 23  AEAAPIEMQVVE---------GDVRSVLLSLARTAHENIVLDDSVAGTVTLHATEEPAKL 73

Query: 87  ---------MYLFGKNVGQANVILIGHDGKQMLNLDI--LIERDIAHLEMTLRRFIADSN 135
                    + L     G   ++        + ++ +  +   D A L          + 
Sbjct: 74  LRMIAASKGLVLI--KEGSTYLVTTMPRADALRSVHVYPVRHADPADLAHA-------AE 124

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           + ++ V+      G              + + L      + AN +  KV+  L+     Q
Sbjct: 125 LSLKSVAGDKTADGQETGTARRVLVDSATNSVLFYGTAAEAANVA--KVVQQLD-RKPRQ 181

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV--------SEGGDFSV 247
           V+L+  +  + +D  K++G +   +     P         G               D +V
Sbjct: 182 VSLEAKVLALSKDASKKLGVEWQWSSLPQYPDFETTYRHKGSANEVQEKEIKRHTQDGTV 241

Query: 248 KGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            G++            F +   + AL      + LA P +T + G+ A    GG+    T
Sbjct: 242 PGIIQFGRGPEGVPFEFYYSATIQALVTQGKAKMLARPNITTVQGREALINIGGEVPVPT 301

Query: 298 VS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
            S  ++T  T+ T    G++L  TP +   GRI   + TEVS P+  V       ++ R 
Sbjct: 302 QSVTNNTTTTTYTYRQAGIILRCTPRIHEDGRITATVHTEVSSPLY-VEDIKAYRFQNRS 360

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ADTTV L  G T+V+ GL+  D  +    IP L  +PILG+ FR+ R +R E+EI I  T
Sbjct: 361 ADTTVSLRDGETMVIGGLIGSDESRTLSKIPFLGDLPILGSFFRSVRQSRSESEIMIFLT 420

Query: 416 PFLV 419
             ++
Sbjct: 421 AHVI 424


>gi|107021570|ref|YP_619897.1| Type II secretion system gspD [Burkholderia cenocepacia AU 1054]
 gi|116688086|ref|YP_833709.1| general secretion pathway protein D [Burkholderia cenocepacia
           HI2424]
 gi|105891759|gb|ABF74924.1| Type II secretion system gspD [Burkholderia cenocepacia AU 1054]
 gi|116646175|gb|ABK06816.1| general secretion pathway protein D [Burkholderia cenocepacia
           HI2424]
          Length = 774

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 123/342 (35%), Gaps = 50/342 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G         +A   + + +  +    Y N   + V++ L+ A   QV ++  I E+  
Sbjct: 366 SGDDNQPGGMIQADSATNSLIITASDPVYRN--LRSVIDQLD-ARRAQVYIEALIVELNS 422

Query: 208 DILKQIGFQHSITGSS--SGPSKSFAADFGGKFVSE------------------GGDFSV 247
           +    +G Q  +       G + +     G   ++                       ++
Sbjct: 423 NTSGNLGIQWQVASGQFLGGTNLNPTGGLGNSIINLTTGGTAATAGLAANLANLNQGLNI 482

Query: 248 KGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
             + + F       +L      +    L+ P L  +  + A    G      T S S   
Sbjct: 483 GWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLT 542

Query: 305 TSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRK 355
           +  T          D G+ LH  P +   G + L++ TE S  V G  NA   P++  R 
Sbjct: 543 SGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVAGTTNAQTGPTFTKRS 602

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             +T+   +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R +T + +   
Sbjct: 603 IQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSETKQRAKTNLMVFLR 662

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           P ++               S    A+A   NR + I G   A
Sbjct: 663 PVII---------------SDRSTAQAVTANRYDYIQGVTGA 689


>gi|56461126|ref|YP_156407.1| Type II secretory pathway, component PulD [Idiomarina loihiensis
           L2TR]
 gi|56180136|gb|AAV82858.1| Type II secretory pathway, component PulD [Idiomarina loihiensis
           L2TR]
          Length = 708

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 123/302 (40%), Gaps = 49/302 (16%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAAD 233
           +S +KV+  L+I    QV ++  I E+        G Q       +   ++G      + 
Sbjct: 339 ASLEKVIRDLDIR-RAQVQVEAIIVEIMEGDNVDFGVQWISEDGGMVQYNNGNQVPIGSL 397

Query: 234 FGGKF------------VSEGGD----------------FSVKGVLDRF-------SFET 258
             G +            +++GG                  ++ G ++          +  
Sbjct: 398 AAGAYQAREREGTTTTRITDGGVEVTTTEPDEPGDVSLLANLLGSVNGMMFGTIQNDWAA 457

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYG 313
           V+ A+ + T    LA P++  +  + ASF  G +    + S++         +V   + G
Sbjct: 458 VVQAVTQDTRSNILATPSIVTVDNEEASFLVGQEVPTISGSTTGDNNDNPFQTVDRTEIG 517

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L  TP +     + + I+ EVS          +     R+  TTV    G TIVL GL
Sbjct: 518 IKLKVTPQINEGDAVQMTIEQEVSSLSGATAVDVI--INKRELKTTVMADDGETIVLGGL 575

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDD 432
           + +D+Q+    +PLL  IPILG LF ++  ++++  + +   P +V+    MR+LS    
Sbjct: 576 IDEDVQESVSKVPLLGDIPILGKLFSSTSTSKQKRNLMVFIRPTIVRDGNRMRELSSAKY 635

Query: 433 HY 434
           +Y
Sbjct: 636 NY 637


>gi|171318827|ref|ZP_02907964.1| general secretion pathway protein D [Burkholderia ambifaria MEX-5]
 gi|171095968|gb|EDT40901.1| general secretion pathway protein D [Burkholderia ambifaria MEX-5]
          Length = 775

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 119/348 (34%), Gaps = 56/348 (16%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G         +A   + + +  +    Y N   + V++ L+ A   QV ++  I E+  
Sbjct: 360 SGDDNQPGGMIQADSATNSLIITASDPVYRN--LRSVIDQLD-ARRAQVYIEALIVELNS 416

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFG----------------------GKFVSEGGDF 245
                +G Q  +         +     G                      G   S  G  
Sbjct: 417 TTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSIINLTAGGVANAAGGITGGGLASNLGSL 476

Query: 246 S-------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           S       +  +        +L      +    L+ P L  +  + A    G      T 
Sbjct: 477 SQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATG 536

Query: 299 SSSTGATSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMP 349
           S S   +  T          D G+ LH  P +   G + L++ TE S  V G  NA   P
Sbjct: 537 SYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTNAQTGP 596

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R   +T+   +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T 
Sbjct: 597 TFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRQKTN 656

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           + +   P ++               S    A+    NR + I G   A
Sbjct: 657 LMVFLRPVII---------------SDRSTAQEVTANRYDYIQGVTGA 689


>gi|307247187|ref|ZP_07529238.1| hypothetical protein appser2_1870 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307249414|ref|ZP_07531405.1| hypothetical protein appser4_2250 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307251732|ref|ZP_07533636.1| hypothetical protein appser6_2530 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253966|ref|ZP_07535818.1| hypothetical protein appser9_2240 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256227|ref|ZP_07538014.1| hypothetical protein appser10_2320 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307262791|ref|ZP_07544418.1| hypothetical protein appser13_2170 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306856325|gb|EFM88477.1| hypothetical protein appser2_1870 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306858556|gb|EFM90621.1| hypothetical protein appser4_2250 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306860818|gb|EFM92827.1| hypothetical protein appser6_2530 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863170|gb|EFM95112.1| hypothetical protein appser9_2240 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865408|gb|EFM97304.1| hypothetical protein appser10_2320 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306871936|gb|EFN03653.1| hypothetical protein appser13_2170 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 429

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 14/251 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFV 239
           +++  L+   E Q+ ++  I  +  + L+++G +  I   ++G    + S  A+      
Sbjct: 163 QLIRNLDKPTE-QIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGSLEANGLPNTN 221

Query: 240 SEGGDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
               +F V            ++    +  L ALE+   +  +A P L   + + AS   G
Sbjct: 222 RLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQG 281

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMP 349
            +  Y   +      ++   +  + L  TP + +  +I L +    + P   G     + 
Sbjct: 282 TEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPNSTGSTLQGLV 341

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   ++ +T V    G TIVL G+ +    + ++ +P+L  IP+L  LF +S     + E
Sbjct: 342 TIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFSHSSDKISKRE 401

Query: 410 IFIAATPFLVK 420
           + I  TP++VK
Sbjct: 402 LVIFVTPYIVK 412


>gi|304412646|ref|ZP_07394250.1| general secretion pathway protein D [Shewanella baltica OS183]
 gi|307307256|ref|ZP_07586993.1| general secretion pathway protein D [Shewanella baltica BA175]
 gi|304348990|gb|EFM13404.1| general secretion pathway protein D [Shewanella baltica OS183]
 gi|306910311|gb|EFN40743.1| general secretion pathway protein D [Shewanella baltica BA175]
          Length = 704

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 111/282 (39%), Gaps = 45/282 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +  G       +     G      
Sbjct: 337 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWASKGGLGTQFNNLGPTIGEIGAGV 395

Query: 236 -------GKFVSEGGDF------------------------SVKGVLDRFSFETVLHALE 264
                  G  V  G +                          +   +    F  ++ A+ 
Sbjct: 396 WAAQPIEGDLVCSGTNLDNCKRNPDKQGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVS 455

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFT 319
             T    LA P++T +  Q ASF  G +    T S+++ +      +V   + GV L   
Sbjct: 456 SDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERKEVGVKLKVV 515

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL GL+ +++Q
Sbjct: 516 PQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEVQ 573

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  + +P L  IPI+G LF++S   + +  + I   P +++ 
Sbjct: 574 ESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKPTIIRD 615


>gi|83749448|ref|ZP_00946440.1| General secretion pathway protein D [Ralstonia solanacearum UW551]
 gi|207738427|ref|YP_002256820.1| gspd-related protein [Ralstonia solanacearum IPO1609]
 gi|83723885|gb|EAP71071.1| General secretion pathway protein D [Ralstonia solanacearum UW551]
 gi|206591793|emb|CAQ58699.1| gspd-related protein [Ralstonia solanacearum IPO1609]
          Length = 657

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 149/410 (36%), Gaps = 55/410 (13%)

Query: 53  GLNKVIILQVPVDVQ-DVLVSDPTKADVV------------VHSPRTMYLFGKNVGQANV 99
           GLN V    V  D +  V + + T A VV            V     + ++         
Sbjct: 206 GLNFVFDKDVRTDQKVTVFLRNSTVASVVNTVLLTNQLEQRVLDGNAILIYPNTP----- 260

Query: 100 ILIGHDGKQMLNLD-ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
                D + +     +L   D   +  TL+  +   +I V+   + +V+      IQ ++
Sbjct: 261 -AKQRDYQPLTVRTFVLSNSDAKDVANTLKTILKTRDIVVDEKRNMIVMRDTPDAIQAAE 319

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           + V + E                           E +V L+V I EV+R  L+ +G Q  
Sbjct: 320 KLVAVHEM-------------------------PEPEVMLEVEILEVKRSRLQDLGIQLP 354

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
              S +  + S         +       +   +   +    ++     T    LA P + 
Sbjct: 355 SQLSLTPLASSSGGTLTLDDLRHLNPTRIGATVSPLN----VNVNAAVTDTNVLANPRVR 410

Query: 279 AISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
             + + A    G +    T +S+     A +V   D G+ L   PTV     + +RI  E
Sbjct: 411 TRNKEKARIQVGQRVPNVTTTSTATGFVAENVQYVDVGLKLEVEPTVTPDNEVTIRINLE 470

Query: 336 VSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           VS+ +  V             R A T + L  G   +LAGL++D+ +     +P L  IP
Sbjct: 471 VSDIISQVQTKSGSIAYEIGTRNATTLLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIP 530

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
            LG LF     N+ ++EI ++ TP +++P    +L   +     E   + 
Sbjct: 531 ALGRLFGAQSDNKLKSEIVLSITPRVIRPAQRPNLGSAEFDSGTESSLRL 580


>gi|330940238|gb|EGH43375.1| general secretion pathway protein D [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 295

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 102/262 (38%), Gaps = 19/262 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             QV ++  I EV+      +G Q  +     +SG + +     G +     G  ++   
Sbjct: 21  PLQVQIETRILEVQLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 80

Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
              F      + +  L ALE     + L+ P+L  ++ Q A    G        S +T  
Sbjct: 81  DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 140

Query: 305 T------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRK 355
                  SV     GV+L   P +   G + + IQ +VS       G  A   P    R 
Sbjct: 141 NAGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTDTTGNGANGNPRISTRS 200

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V   SG T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  T
Sbjct: 201 VATQVAAQSGQTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLIT 260

Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437
           P  +   +     +  D Y  +
Sbjct: 261 PRGI--TSSSQARQVTDDYRQQ 280


>gi|307545809|ref|YP_003898288.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
 gi|307217833|emb|CBV43103.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
          Length = 700

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 119/281 (42%), Gaps = 34/281 (12%)

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
           A    +++++ L++    QV ++  IAE+     K++G Q  + G  SG     A     
Sbjct: 353 ALEGYRELVSRLDMR-RAQVAVEAIIAEITESRAKELGVQW-LFGDISGEGTVPAGGVNF 410

Query: 237 KFVSEGGD-------------------FSVKGVL--------DRFSFETVLHALERATAI 269
              S  G                     ++ GV            SF  +L+AL   T  
Sbjct: 411 PSASTPGINQIAAAAASQDASALGSLLGNLNGVTAGVGRLSSGGVSFAMLLNALRSDTQT 470

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSP 325
             L+ P+LT +    AS   G +  + T S++   T    ++   D GV L+  PT+ + 
Sbjct: 471 NLLSTPSLTTLDNAEASILVGQEVPFVTGSTTVDNTNPFQTIQREDVGVKLNIRPTIGAD 530

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
             I L I  EVS    GV A D+ +   R+ +TTV    GG IVL GL+ D+    ++ +
Sbjct: 531 NSIRLEIVQEVSSIDEGVKASDVVT-NKREIETTVLTQDGGIIVLGGLISDENANAEQKV 589

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           PLL  IP +G LFR  R  +++  + +     +++      
Sbjct: 590 PLLGDIPGVGRLFRYDRDTQDKRNLMVFIRARVLRDAPQTQ 630


>gi|217969269|ref|YP_002354503.1| type IV pilus secretin PilQ [Thauera sp. MZ1T]
 gi|217506596|gb|ACK53607.1| type IV pilus secretin PilQ [Thauera sp. MZ1T]
          Length = 711

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 103/268 (38%), Gaps = 28/268 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------SSGPSKSF-- 230
            S + +++ +++A   QV ++  I E  +   + +G +  +  S        G    F  
Sbjct: 438 QSVRNLISDVDVA-PRQVLIEARIVEANKTFSRDLGVRLGLGKSKPWKINDGGAQIGFGS 496

Query: 231 ----------------AADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTL 272
                            A  G    +  G F++       +      L ALE     R +
Sbjct: 497 STLGGSAGSSGSFRPETATSGADIQNPYGSFALSIFNSSVTRFLNLELQALESDGRGRVV 556

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           + P +   +   A    G Q      S+  G   +V   D  + L   P++   GRI L 
Sbjct: 557 SSPRVLTANQVEALIKQGTQIPIPIPSTQVGGEPTVEYKDAVLSLKVRPSITPDGRIQLS 616

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +      P         PS   +   T V + +GGT+V+ G+ ++     ++ +P+L ++
Sbjct: 617 VLVNKDRPDFTNVVLGRPSIDTKSVQTEVTVENGGTLVIGGVYEEQELNGEDRVPVLGEL 676

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P+LG LFR      E+ E+ +  TP LV
Sbjct: 677 PVLGGLFRTRSTIAEKKELLVFITPRLV 704


>gi|117625269|ref|YP_854407.1| putative type II secretion protein GspD [Escherichia coli APEC O1]
 gi|115514393|gb|ABJ02468.1| putative type II secretion protein GspD [Escherichia coli APEC O1]
          Length = 686

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|319761508|ref|YP_004125445.1| general secretion pathway protein d [Alicycliphilus denitrificans
           BC]
 gi|330823377|ref|YP_004386680.1| general secretion pathway protein D [Alicycliphilus denitrificans
           K601]
 gi|317116069|gb|ADU98557.1| general secretion pathway protein D [Alicycliphilus denitrificans
           BC]
 gi|329308749|gb|AEB83164.1| general secretion pathway protein D [Alicycliphilus denitrificans
           K601]
          Length = 777

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 111/280 (39%), Gaps = 36/280 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228
           + V++ L+     QV ++  I EV  + + + G Q      + G                
Sbjct: 422 RAVIDKLD-GKRAQVLIESLIVEVSANKVAEFGIQWQTAFGNYGNGAVGVIGTNSGVAGG 480

Query: 229 --------SFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276
                   +   ++     S  G+     +  R +       + + LE       L+ P 
Sbjct: 481 NIIDLAVAAATGNYASLTSSAIGNGMNVAIAPRINGKYYLGALANFLENTGDANVLSTPN 540

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGR 327
           L  +  + A    G    + T S +            T+V   D G++L   PT+   G 
Sbjct: 541 LLTLDNEEAQIIIGNNVPFPTGSYANTGGNGGAVNPFTTVERKDVGLMLRVRPTINENGT 600

Query: 328 IGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           + L +  EVS+         + PS   R  ++TV +  G  IVL GLL+D     ++ +P
Sbjct: 601 VKLTLYQEVSKVNESTLTNVNGPSTSKRSIESTVLVDDGSVIVLGGLLEDSYSLNQDKVP 660

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++  +P+LGALFRN   +R++T + +   P +++  A  D
Sbjct: 661 VMGDLPVLGALFRNENRSRKKTNLMVFLRPMVIRDNATSD 700


>gi|297537923|ref|YP_003673692.1| type II and III secretion system protein [Methylotenera sp. 301]
 gi|297257270|gb|ADI29115.1| type II and III secretion system protein [Methylotenera sp. 301]
          Length = 675

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 17/247 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFG---GKFVSEGGDFSVK 248
            +V L++ + EV R  L+++G ++   I  +S  P  +  +  G      V+     +++
Sbjct: 336 PEVMLEIEVLEVSRSRLQELGVEYPNRIGVNSLIPITTVTSATGVVASSTVNTPTQLTLE 395

Query: 249 GVLD------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G+L+        S    ++  +    +  L+ P +   + + A    G +    T +S+ 
Sbjct: 396 GLLNLSKGRFDVSPNPAVNFRKTTGDVNLLSNPRIRVRNNEKAKILVGDKVPVITTTSTA 455

Query: 303 G---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKA 356
               + SV   D G+ L   P + +   + ++I  EVS      I  N   + +   R A
Sbjct: 456 NVGISESVQYVDVGLKLDVEPRITADNYVNIKIALEVSSLGERTITRNGATVYTIGTRDA 515

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T + L  G T VLAGL+ DD ++    +P L  IP++G LF N +  + +TEI +A TP
Sbjct: 516 NTILRLKDGETQVLAGLISDDERKNASKLPGLGDIPLIGRLFSNQQDQKNKTEIVLAITP 575

Query: 417 FLVKPVA 423
            ++  +A
Sbjct: 576 RIISNIA 582


>gi|91785777|ref|YP_560983.1| putative general secretory pathway protein D [Burkholderia
           xenovorans LB400]
 gi|91689731|gb|ABE32931.1| Putative general secretory pathway protein D [Burkholderia
           xenovorans LB400]
          Length = 814

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 113/317 (35%), Gaps = 57/317 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+ A   QV L+  I E+  +    +G Q  +  +S     +         V+ 
Sbjct: 419 RAVIDQLD-ARRAQVYLEALIVELNSNTSGNLGIQWQVANNSIFAGTNLQTGSSNSIVNL 477

Query: 242 GGDFS-----------------------------VKGVLDRFSFETVLHALERATAIRTL 272
                                             +  +        +L AL +      L
Sbjct: 478 TAGAIAAGAAGAATGGLASAIGTQGLQQGLNIGWIHNIFGVQGLGALLQALSQTADANVL 537

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLS 324
           + P L  +  + A    G     +T S S   +S  T         D G+ LH  P +  
Sbjct: 538 STPNLITLDNEEAKIVVGTNVPIQTGSYSNLTSSTATSAFNTYDRVDVGLTLHVKPQITD 597

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            G + L++ TE S  V G          P +  R   +TV   +G  IVL GL++D+ Q 
Sbjct: 598 GGILKLQLYTEDSAIVTGTTNATTNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQV 657

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               +PLL  IP +G LFR+ +  R +T + +   P ++               S    A
Sbjct: 658 SNSKVPLLGDIPWIGQLFRSEQKTRNKTNLMVFLRPVII---------------SDRGTA 702

Query: 441 KAFFFNRVNKIYGPKEA 457
           +A   NR + I G + A
Sbjct: 703 QAVTSNRYDYIQGVQGA 719


>gi|27364325|ref|NP_759853.1| general secretion pathway protein D [Vibrio vulnificus CMCP6]
 gi|320157717|ref|YP_004190096.1| general secretion pathway protein D [Vibrio vulnificus MO6-24/O]
 gi|27360443|gb|AAO09380.1| general secretion pathway protein D [Vibrio vulnificus CMCP6]
 gi|319933029|gb|ADV87893.1| general secretion pathway protein D [Vibrio vulnificus MO6-24/O]
          Length = 673

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 109/291 (37%), Gaps = 46/291 (15%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA- 231
           + + V+  L+I    QV ++  I E+       +G Q         I  S++G S     
Sbjct: 329 ALQDVITQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAMIQYSNTGASIGQVM 387

Query: 232 -------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
                                           D+     +          +    +  ++
Sbjct: 388 IGLEEAKDTTKTESRWDPDKNQWVDRQYTEKGDYSTLASALSKVNGAALSVVMGDWTALI 447

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315
            A+   +    L+ P++T +    ASF  G +    T S++         +V   + G+ 
Sbjct: 448 SAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIK 507

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ 
Sbjct: 508 LKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLID 566

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +   + +  +PLL  IP+LG LF+++    E+  + +   P +++     D
Sbjct: 567 ERALESESKVPLLGDIPVLGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTAD 617


>gi|116053188|ref|YP_793509.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588409|gb|ABJ14424.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 710

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 104/285 (36%), Gaps = 37/285 (12%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------- 225
           + Q      +++++ L+I    QV ++  I E      K +G +      +         
Sbjct: 426 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHNGNWNSYGKN 484

Query: 226 --------------------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
                                      S +   D G K  S G    +  + D    +  
Sbjct: 485 GNMGIKDKEGYNCGPFQGQCTFPTRDNSPTPFVDMGAKDASSG--IGIGFITDNIILDLQ 542

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E+      +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  T
Sbjct: 543 LSAMEKTGNGEVVSQPKVVTSDKETAKILKGSEIPYQEASSSGATST-SFKEAALSLEVT 601

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +    RI + ++     P        +P     + +  + +  G TIV+ G+  +   
Sbjct: 602 PQITPDNRIIVEVKVTKDAPDFQNALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQT 661

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           +  + +P L  +P LG LFR    +  + E+ +  TP ++   A+
Sbjct: 662 KAVDKVPFLGDLPYLGRLFRRDTVSDTKNELLVFLTPRIMNNQAI 706


>gi|254787478|ref|YP_003074907.1| fimbrial assembly protein PilQ [Teredinibacter turnerae T7901]
 gi|237686656|gb|ACR13920.1| fimbrial assembly protein PilQ [Teredinibacter turnerae T7901]
          Length = 727

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 110/277 (39%), Gaps = 43/277 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
           K++++ ++I    QV ++  I     D  K++GF+ +     S  S S   +F G   S 
Sbjct: 449 KQLIDRIDIP-VRQVMIEARIVVANSDFRKELGFRIAGDAVESSKSGSHIHEFTGSLDSV 507

Query: 241 --------------------------------------EGGDFSVKGVLDRFSFETVLHA 262
                                                   G  +   + + F     L A
Sbjct: 508 YADETSITGAFVDSDGDGTADRAHTFPQNSFVDLGVFNPTGSLAWNVISNNFMIGMELSA 567

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           L+ +     +++P +     Q AS  SG    ++  S+S G T+++  D  + L  TP +
Sbjct: 568 LQDSGFAEIVSQPKVITGDKQQASIQSGTSVPFQEESAS-GGTTISFKDVVLRLDVTPQI 626

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
               RI + ++          +   +P   +   DT+V +  G T+VL G+   + ++ +
Sbjct: 627 TPDNRIIMDLEILQDSVTGYESG--VPIIDITHLDTSVLVADGDTVVLGGIYATEQRKGQ 684

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +PLL  IP+LG LFR      ++ E+ I  TP ++
Sbjct: 685 SKVPLLGDIPLLGRLFRYDISQEDKRELLIFITPRIM 721


>gi|75994479|ref|YP_325593.1| type II secretion protein [Escherichia coli O157:H7 EDL933]
 gi|3822147|gb|AAC70101.1| type II secretion protein [Escherichia coli O157:H7]
          Length = 642

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 107/297 (36%), Gaps = 30/297 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+I    QV ++  IAE++      +G Q     +      S          + 
Sbjct: 321 ENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTGLPITTMVQTR 379

Query: 242 GGDF-------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             +               +     + ++  +L AL  ++    LA P++  +    A+F 
Sbjct: 380 QNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFN 439

Query: 289 SGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---I 341
            G +       +T S      +V     G+ L   P +     + L I+ EVS      +
Sbjct: 440 VGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAV 499

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                   ++  R     + + +G T+V+ GLL   I+  +  +PLL  IP+LG LFR  
Sbjct: 500 ATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAK 559

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
                +  + +   P +++           D +      K   FN+       KE +
Sbjct: 560 SEQTAKRNLMLFIRPTIIR---------ERDGFRHASAEKYQSFNQEQVQSRGKETT 607


>gi|332531032|ref|ZP_08406951.1| type II and III secretion system protein [Hylemonella gracilis ATCC
           19624]
 gi|332039513|gb|EGI75920.1| type II and III secretion system protein [Hylemonella gracilis ATCC
           19624]
          Length = 740

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 112/313 (35%), Gaps = 48/313 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------------GSSS 224
           + V++ L++    QV ++  IAEV  D+    G Q                     GS +
Sbjct: 395 RAVIDQLDMR-RAQVFVESLIAEVNADVANDFGIQWQGGIPSGSSSSVVGLMGTNFGSGA 453

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTA 279
           G   + A+       +  G     GV      +  +   +   LE       L+ P L  
Sbjct: 454 GNIFNLASGISSGQPAAPGAGFTAGVGVQRGNNGVALGVLARFLETNRMGNVLSTPNLMT 513

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  + A    G    + T   +   +         ++   D G+ L   P +   G + +
Sbjct: 514 LDNEEAKIVIGQNVPFVTGQYTANNSSSGAVNPFQTIERRDVGLTLAVRPQISENGTVKM 573

Query: 331 RIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            I  EVS      + +        R  DT+V +  G  IVL GLL+D+    +E +P L 
Sbjct: 574 VISQEVSSVDPTSLTSAAGLRTSKRSIDTSVLVDDGAIIVLGGLLQDESSVSEEKVPGLG 633

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
            IP LG LFR+   +R++T + +   P +V+                  D+     +R +
Sbjct: 634 SIPGLGWLFRSESGSRKKTNLMVFLRPVIVRNT---------------QDSNRVSLDRYD 678

Query: 450 KIYGPKEASEVEG 462
            +   +   +   
Sbjct: 679 LMRAVQSQQQPAR 691


>gi|90022332|ref|YP_528159.1| peptidase M41, FtsH [Saccharophagus degradans 2-40]
 gi|89951932|gb|ABD81947.1| type II and III secretion system protein [Saccharophagus degradans
           2-40]
          Length = 727

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 110/278 (39%), Gaps = 42/278 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------------ITGSSSGP 226
           +++++ ++I    QV ++  I     D  K++G + +               +TG  +G 
Sbjct: 446 RRLVDRIDIP-VRQVMIEARIVIANSDFRKELGVRMAGDAVETSVSGDTKFEMTGRLTGL 504

Query: 227 SKSFAADFGGKFV-------------------------SEGGDFSVKGVLDRFSFETVLH 261
           + +  +     FV                         +  G F+   +   F     L 
Sbjct: 505 TAADGSGPEALFVDTDGDGVTDDERSLLDSSLVDLGVFNPAGAFTWNVISSNFLLGMELS 564

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           ALE +     +++P +     Q AS  SG +  Y+  S+S G T+ +  +  + L  TP 
Sbjct: 565 ALENSGYAEIVSQPKVITGDKQKASIESGTEIPYQEESAS-GGTTTSFKEAVLKLEVTPQ 623

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +    R+ + +               +P   + + +T V +  G TIVL G+   +    
Sbjct: 624 ITPDNRVIMDLVINQDSISSIDANSGIPVIDITQLETQVLVADGETIVLGGIYTTNTFTG 683

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +  +PLL  IP +G LFRN   + ++ EI I  TP ++
Sbjct: 684 ETKVPLLGDIPFVGKLFRNDFKSEDKREILIFITPRIM 721


>gi|238751132|ref|ZP_04612627.1| Protein transporter HofQ [Yersinia rohdei ATCC 43380]
 gi|238710610|gb|EEQ02833.1| Protein transporter HofQ [Yersinia rohdei ATCC 43380]
          Length = 376

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L+++G +  +  +    S     F  +           F+V  +
Sbjct: 145 QQVQLAAHIVTISRENLQELGVRWGMGEAKQNSSLRMNDFNVNLPLPNRVISAGFNVARI 204

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +   LE+   I  +A P L A   Q+AS   G    Y       G ++V   
Sbjct: 205 GGRLLELELSA-LEQENQIDIIASPHLVASHQQTASIKQGSDIPYTVSKGKKGISTVEFK 263

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +  GD  +     ++  T + +  G TI
Sbjct: 264 EAVLGMEVTPKILRNGKITLDLKISQNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETI 323

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +    Q    +P+L+ IP LG LF+     +   E+ I  TP L+
Sbjct: 324 VLGGIFQQKSTQGVHKVPVLADIPWLGVLFKQDAQQQSRRELVIFITPKLI 374


>gi|53804514|ref|YP_113593.1| general secretion pathway protein D [Methylococcus capsulatus str.
           Bath]
 gi|53758275|gb|AAU92566.1| general secretion pathway protein D [Methylococcus capsulatus str.
           Bath]
          Length = 751

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 14/252 (5%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----GPSKSFAADFGG 236
           + V+  L++    QV +  TI E+      Q G +  I+  SS      P  +   DF  
Sbjct: 465 EAVIKALDVL-PLQVLIDATIVEISLKNDLQYGLKWLISSGSSTEALGSPLAALVKDFIN 523

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              S  G FS   + +  + + +L+ L +   +  ++ P+L  ++ Q A    G Q    
Sbjct: 524 GAASASGGFSYALIANGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVL 583

Query: 297 TVSSSTGATSVTTHDY------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           T ++++     T  +       GV L   P V S G + L I   +S P          +
Sbjct: 584 TGTTASATIGTTQFNQFQQQQSGVTLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKT 643

Query: 351 YR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           ++   R+  + V +P+G T+ L GL+ D   + + G+P L++IP++G +F ++    E T
Sbjct: 644 FQFANREIQSVVAVPNGQTLALGGLISDKRSETQTGLPYLNQIPMIGWMFGSTEIKPERT 703

Query: 409 EIFIAATPFLVK 420
           E+ +  TP +V+
Sbjct: 704 ELVVLITPRVVE 715


>gi|91212377|ref|YP_542363.1| type II secretion protein GspD [Escherichia coli UTI89]
 gi|218560038|ref|YP_002392951.1| general secretion pathway protein D precursor [Escherichia coli
           S88]
 gi|237706291|ref|ZP_04536772.1| type II secretion protein GspD [Escherichia sp. 3_2_53FAA]
 gi|91073951|gb|ABE08832.1| hypothetical type II secretion protein GspD [Escherichia coli
           UTI89]
 gi|218366807|emb|CAR04576.1| general secretion pathway protein D precursor [Escherichia coli
           S88]
 gi|226899331|gb|EEH85590.1| type II secretion protein GspD [Escherichia sp. 3_2_53FAA]
 gi|294493975|gb|ADE92731.1| general secretion pathway protein D [Escherichia coli IHE3034]
 gi|307625435|gb|ADN69739.1| general secretion pathway protein D precursor [Escherichia coli
           UM146]
 gi|323951515|gb|EGB47390.1| general secretion pathway protein D [Escherichia coli H252]
          Length = 686

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|10955268|ref|NP_052609.1| EtpD [Escherichia coli O157:H7 str. Sakai]
 gi|149930769|ref|YP_001294686.1| w0022 [Escherichia coli]
 gi|37695757|gb|AAR00419.1|AF401292_20 w0022 [Escherichia coli]
 gi|2598401|emb|CAA70955.1| etpD [Escherichia coli]
 gi|3337000|dbj|BAA31759.1| Type II secretion pathway related protein [Escherichia coli O157:H7
           str. Sakai]
          Length = 585

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 107/297 (36%), Gaps = 30/297 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+I    QV ++  IAE++      +G Q     +      S          + 
Sbjct: 264 ENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTGLPITTMVQTR 322

Query: 242 GGDF-------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             +               +     + ++  +L AL  ++    LA P++  +    A+F 
Sbjct: 323 QNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFN 382

Query: 289 SGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---I 341
            G +       +T S      +V     G+ L   P +     + L I+ EVS      +
Sbjct: 383 VGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAV 442

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                   ++  R     + + +G T+V+ GLL   I+  +  +PLL  IP+LG LFR  
Sbjct: 443 ATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAK 502

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
                +  + +   P +++           D +      K   FN+       KE +
Sbjct: 503 SEQTAKRNLMLFIRPTIIR---------ERDGFRHASAEKYQSFNQEQVQSRGKETT 550


>gi|192359937|ref|YP_001980940.1| fimbrial assembly protein PilQ [Cellvibrio japonicus Ueda107]
 gi|190686102|gb|ACE83780.1| fimbrial assembly protein PilQ [Cellvibrio japonicus Ueda107]
          Length = 714

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 118/303 (38%), Gaps = 36/303 (11%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + +      E + + +     ++    + ++++  ++I    QV ++  I     
Sbjct: 411 TGSVLSERGQGIVDERTNSIIITDTADRI--EAFRRLVEQIDIPI-RQVMIESRIVIANT 467

Query: 208 DILKQIGFQHSITGSS-------------------SGPSKSFAADFGGKFV--------- 239
           D  +Q+G +    G                      G S +     GG            
Sbjct: 468 DFERQLGIRWGGAGYHLNNSRLINVAGSQSGLDDEDGTSPANWFTNGGTLNLTENNMVNL 527

Query: 240 ---SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              +  G  +V  + D    +  L ALE +     +++P +     Q A   SG +  Y+
Sbjct: 528 PVNNPAGSIAVGVLTDSVFLDMELSALETSGYAEIVSQPKVITSDKQKAVIKSGKEIAYQ 587

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
             S S G T+    +  ++L   P +    RI + +       V  +    +PS  V + 
Sbjct: 588 ETSPS-GGTTTGFKEAVLMLEVVPQITPDNRIIMDLFVTKDS-VGEITQQGVPSLDVTRL 645

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V + +G T+VL G+   +  + +  +P+L  IP LG LF+ +  N+ +TE+ I  TP
Sbjct: 646 QTKVLVNNGQTVVLGGVFSLESTKGESKVPVLGDIPYLGRLFKRTVDNQFKTELLIFVTP 705

Query: 417 FLV 419
            L+
Sbjct: 706 KLI 708


>gi|53728904|ref|ZP_00134621.2| COG4796: Type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|303250734|ref|ZP_07336930.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|303252023|ref|ZP_07338194.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302649453|gb|EFL79638.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302650404|gb|EFL80564.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 417

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 14/251 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFV 239
           +++  L+   E Q+ ++  I  +  + L+++G +  I   ++G    + S  A+      
Sbjct: 151 QLIRNLDKPTE-QIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGSLEANGLPNTN 209

Query: 240 SEGGDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
               +F V            ++    +  L ALE+   +  +A P L   + + AS   G
Sbjct: 210 RLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQG 269

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMP 349
            +  Y   +      ++   +  + L  TP + +  +I L +    + P   G     + 
Sbjct: 270 TEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPNSTGSTLQGLV 329

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   ++ +T V    G TIVL G+ +    + ++ +P+L  IP+L  LF +S     + E
Sbjct: 330 TIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFSHSSDKISKRE 389

Query: 410 IFIAATPFLVK 420
           + I  TP++VK
Sbjct: 390 LVIFVTPYIVK 400


>gi|238752500|ref|ZP_04613975.1| General secretion pathway protein D [Yersinia rohdei ATCC 43380]
 gi|238709263|gb|EEQ01506.1| General secretion pathway protein D [Yersinia rohdei ATCC 43380]
          Length = 625

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 101/253 (39%), Gaps = 12/253 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGK 237
           +KV+  L++    QV ++  I E +      +G Q +              S   +   +
Sbjct: 314 EKVIEKLDVR-RAQVLVEAIIVETQNGEGLNLGIQWANKFYGGVNFLPKPDSIKDNKSSE 372

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                    +     + +++ +  AL   +    LA P++  +    A F  G +    T
Sbjct: 373 NPVPMLITGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 432

Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPS 350
            + +T       S++    GV+L   P +     + L I+ EVS      +         
Sbjct: 433 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSIADNSDINTHNLGSV 492

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+V+ GLL   I +    +P L  IP++GALFR S+   E++ +
Sbjct: 493 FNKRVVNNAVLVKSGETVVVGGLLDKKINKTINKVPFLGDIPLIGALFRQSKERMEKSNL 552

Query: 411 FIAATPFLVKPVA 423
            +   P +++  +
Sbjct: 553 ILFIKPTILRETS 565


>gi|157377488|ref|YP_001476088.1| general secretion pathway protein D [Shewanella sediminis HAW-EB3]
 gi|157319862|gb|ABV38960.1| general secretion pathway protein D [Shewanella sediminis HAW-EB3]
          Length = 724

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 111/283 (39%), Gaps = 46/283 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 337 ESVINQLDIR-RAQVLVEAIIVEVGEGDDVGFGVQWATAAGGGTQFNNLGPTIGEIGAGV 395

Query: 236 ----------------------GKFVSEGGDFSVKGVLDRFS----------FETVLHAL 263
                                     ++G    +   L + +          F  ++ A+
Sbjct: 396 WQAQEKEASQTCTGSGDNKTCTDNPATQGDITLLAQALGKVNGMAWGVAMGDFGALIQAV 455

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHF 318
              T    LA P++T +  Q ASF  G +    T S+S+ +      +V   + GV L  
Sbjct: 456 SSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSTSSSSNTNPFQTVERKEVGVKLKV 515

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            P +     + L I+ EVS   I    G   ++  R+  TTV   SG  +VL GL+K+++
Sbjct: 516 VPQINEGTSVKLTIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLIKEEV 573

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           Q+  + +P L  +PI+G LF++S     +T + +   P +++ 
Sbjct: 574 QESVQKVPFLGDLPIIGHLFKSSSSGTRKTNLMVFIKPTIIRD 616


>gi|167571805|ref|ZP_02364679.1| general secretion pathway protein D [Burkholderia oklahomensis
           C6786]
          Length = 743

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 115/305 (37%), Gaps = 45/305 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFV 239
           + V++ L+ A   QV ++  + E+       +G Q  +  ++  +G + +     GG  +
Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLTTGGVGGGNSI 445

Query: 240 SE-----GGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTLTAIS 281
           +          +V G L                    +L      +    L+ P L  + 
Sbjct: 446 TNLTAGATNPLNVVGALTPGLNIGWLRNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTLD 505

Query: 282 GQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            + A    G      T S        ++    +    D G+ LH  P +   G + L++ 
Sbjct: 506 NEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITDGGILKLQLY 565

Query: 334 TEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           TE S  V G   +   P++  R   +TV   +G  IVL GL++D+ Q     +PLL  IP
Sbjct: 566 TEDSSVVNGTLTSQTGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVANNKVPLLGDIP 625

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
            +G LFR+    R +T + +   P ++                  + A+A   NR + I 
Sbjct: 626 WIGQLFRSEGKTRTKTNLMVFLRPVII---------------GDRETAQAVTSNRYDYIQ 670

Query: 453 GPKEA 457
           G   A
Sbjct: 671 GVTGA 675


>gi|325294579|ref|YP_004281093.1| type II and III secretion system protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065027|gb|ADY73034.1| type II and III secretion system protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 642

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 126/332 (37%), Gaps = 34/332 (10%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           ++  L+       + +   +   +   +   ++   +   ++    + S          +
Sbjct: 311 IKQELQEPTKTYIVNLNYANAEEIEKEIKELVKKLDKRERITVNKSTNSLLLTVTKKHYQ 370

Query: 183 KVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGK 237
           ++MNLL    +   QV +K  I ++     K  GF   I G +   + PS      +G  
Sbjct: 371 EIMNLLKKLDKPMKQVIVKAKIVQISTSAAKDFGFGWLIGGYNHMGTPPSSYITGSYGFG 430

Query: 238 FVSEGG-----------------------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
             S  G                          +         E  L AL+     + ++ 
Sbjct: 431 LGSNTGVLPFINETSYSSLYNIPVGESTLALGILNKSQNLKVEIALKALQLDGNAKIVSS 490

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLR 331
           P +  ++ Q A+   G +  Y+  + ++G  +   V+     ++L   P + +   I L 
Sbjct: 491 PEVLTLNNQEATIEQGIEIPYRESTVASGGATTYTVSFKRASLILKVKPHITNNNEIILD 550

Query: 332 IQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           ++     P    + +   + P+   R   + +++ +G TIV+ G+ + +  + K G+P++
Sbjct: 551 LEVRKDSPNYEHVALTGSNEPAIDTRNVKSRIKVANGNTIVIGGIYEKEKSKSKTGVPVI 610

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           S IP+LG LF+       E  + I  TP +V+
Sbjct: 611 SNIPLLGWLFKQESVKFTEKNLLIFITPKVVE 642


>gi|110833294|ref|YP_692153.1| general (type II) secretion pathway protein D [Alcanivorax
           borkumensis SK2]
 gi|110646405|emb|CAL15881.1| general (type II) secretion pathway protein D [Alcanivorax
           borkumensis SK2]
          Length = 710

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/329 (20%), Positives = 129/329 (39%), Gaps = 35/329 (10%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   +   L+ F+  +++      D       +   + S +A E     + ++       
Sbjct: 293 DAKSMAELLKNFVDGASVN-RAGGDGKTTSVALNNNEVSIQADESLNALVVRAKPAMMKQ 351

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + V++ L++    Q+ ++  I E+  +  K +GFQ+    +  G     A +FGG  
Sbjct: 352 --IQSVISKLDVR-RAQILIEAAIVEISGEQGKNLGFQYVGGSNEDGVG---AVNFGGNG 405

Query: 239 VSEG----------------GDFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTL 277
           +S                  GD    G+          +  ++ AL  ++ +  L+ P++
Sbjct: 406 LSVNSVVQALASDDPSGLSLGDGITAGLGETDSDGDLKWGALIQALSTSSDVNLLSTPSI 465

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGL 330
             +  + AS   G    + T  S+          T++   D G+ L  TP V     I L
Sbjct: 466 LTLDNEEASIIVGENVPFVTGQSTNTGSGVSNPFTTIQREDVGLTLKVTPHVAGLSTIRL 525

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ E S                RK  +TV      TI L GL+KDDI+     +P L  
Sbjct: 526 ELEQESSAVKDSAGDAVDIVTTTRKLQSTVLADDAETIALGGLIKDDIRVTVRKVPFLGD 585

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP+LG LFR++  +R ++ + +   P ++
Sbjct: 586 IPVLGFLFRSTSKDRVKSNLMVFLKPTIL 614


>gi|296135153|ref|YP_003642395.1| type IV pilus secretin PilQ [Thiomonas intermedia K12]
 gi|295795275|gb|ADG30065.1| type IV pilus secretin PilQ [Thiomonas intermedia K12]
          Length = 752

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 122/357 (34%), Gaps = 55/357 (15%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY--- 176
            A +   L      +          V+L G+  +   + R +    T L+    NQ    
Sbjct: 397 AATVVAMLTGAAGGAQSGTTATPSPVLLPGLSSSAAPTSRILSPRGTVLADPRTNQIFVT 456

Query: 177 -ANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHS--------------- 218
              S  ++V  L+    +   QV ++  I E      + +G +                 
Sbjct: 457 DIPSKLEEVAQLIAKIDKPVRQVMIEARIVEASDQFGRSLGVKLGFLDARGIQGGVPGTN 516

Query: 219 --------ITGSSSG-----------------------PSKSFAADFGGKFVSEGGDFSV 247
                   ++G   G                       P+   A              S+
Sbjct: 517 LVGGTYGTVSGDYLGVANQTNQPGSSAATLADSQFVNLPAFGLAGSLLAGAAPSSLGISL 576

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
                       L A+E     + ++ P +       A+   G +  Y+  +SS GAT+V
Sbjct: 577 FNAAANRFINLELSAMEADGKGKIISSPRVITADLSKATIEQGTEIPYQQATSS-GATAV 635

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           T     + L  TP +   G + + ++     P  G +   +PS       T V++ +GGT
Sbjct: 636 TFKKAVLSLDVTPQITPDGNVIMNVEIHKDSP--GASTAGVPSINTNTVTTQVQVENGGT 693

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           +VL G+     Q   + +PLL  IP+LG LF+N+     + E+ +  TP +V    +
Sbjct: 694 VVLGGIYTSQEQNQTDKVPLLGDIPVLGNLFKNNSKMYNKNELMVFLTPKIVTNADL 750


>gi|168750719|ref|ZP_02775741.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757329|ref|ZP_02782336.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763015|ref|ZP_02788022.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769207|ref|ZP_02794214.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4486]
 gi|168769317|ref|ZP_02794324.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776690|ref|ZP_02801697.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783068|ref|ZP_02808075.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789906|ref|ZP_02814913.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC869]
 gi|168802552|ref|ZP_02827559.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC508]
 gi|195940092|ref|ZP_03085474.1| EtpD [Escherichia coli O157:H7 str. EC4024]
 gi|254667451|ref|YP_003082137.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359]
 gi|261225635|ref|ZP_05939916.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|187767920|gb|EDU31764.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015158|gb|EDU53280.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999508|gb|EDU68494.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355641|gb|EDU74060.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361611|gb|EDU80030.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4486]
 gi|189361663|gb|EDU80082.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366756|gb|EDU85172.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370555|gb|EDU88971.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC869]
 gi|189375476|gb|EDU93892.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC508]
 gi|254595803|gb|ACT75163.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359]
 gi|320187907|gb|EFW62576.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
           EC1212]
 gi|326337158|gb|EGD60994.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
           1125]
 gi|326347656|gb|EGD71374.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
           1044]
          Length = 650

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 107/297 (36%), Gaps = 30/297 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+I    QV ++  IAE++      +G Q     +      S          + 
Sbjct: 329 ENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTGLPITTMVQTR 387

Query: 242 GGDF-------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             +               +     + ++  +L AL  ++    LA P++  +    A+F 
Sbjct: 388 QNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFN 447

Query: 289 SGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---I 341
            G +       +T S      +V     G+ L   P +     + L I+ EVS      +
Sbjct: 448 VGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAV 507

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                   ++  R     + + +G T+V+ GLL   I+  +  +PLL  IP+LG LFR  
Sbjct: 508 ATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAK 567

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
                +  + +   P +++           D +      K   FN+       KE +
Sbjct: 568 SEQTAKRNLMLFIRPTIIR---------ERDGFRHASAEKYQSFNQEQVQSRGKETT 615


>gi|324018098|gb|EGB87317.1| general secretion pathway protein D [Escherichia coli MS 117-3]
          Length = 686

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 119/320 (37%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSV----- 247
                 G Q +            +  P  +  A         G   +SE G  ++     
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 248 ----------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                            G + +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAGGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|332702049|ref|ZP_08422137.1| type II and III secretion system protein [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552198|gb|EGJ49242.1| type II and III secretion system protein [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 524

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/279 (22%), Positives = 109/279 (39%), Gaps = 35/279 (12%)

Query: 175 QYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
           Q A   S++++ L+    +   Q+ LK  I E  +D  + +G Q      +SG   +  A
Sbjct: 226 QAAPEESRRILRLVEQLDKPRAQILLKAHIVETTKDTARDLGVQWGGVYQTSGSGNNLFA 285

Query: 233 DFGGK------------------------FVSEGGDFSVKGV--------LDRFSFETVL 260
             GG                          V+   D +  G         L     E  L
Sbjct: 286 IPGGTNGRLEDNKWVYDSTLGTGIGGQGFGVNLPADLAAGGTQLGLMFGKLGGSILELQL 345

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            AL+    +  L+ P+++ +  Q A   +G +  Y   +   G  +V   D  + L  TP
Sbjct: 346 SALQENGRVNILSSPSISTLDNQMAFTENGERVPY-VATDEEGDLNVKFEDAVLRLEITP 404

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            V+   ++ L+I     E          P    ++ +T + +  G T+V++GL +D    
Sbjct: 405 HVIDREQLKLKILVRKDEVDTSRTVQGNPFIIKKRTETVLVVDDGETVVISGLSRDFDSS 464

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             + +P L  IP+LG LF+ +    E  E+ I  TP ++
Sbjct: 465 RDQKVPWLGDIPLLGRLFQRNVDKAEMEEVLIFITPHVL 503


>gi|254238253|ref|ZP_04931576.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa C3719]
 gi|126170184|gb|EAZ55695.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa C3719]
          Length = 710

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 104/285 (36%), Gaps = 37/285 (12%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------- 225
           + Q      +++++ L+I    QV ++  I E      K +G +      +         
Sbjct: 426 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHNGNWNSYGKN 484

Query: 226 --------------------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
                                      S +   D G K  + G    +  + D    +  
Sbjct: 485 GNMGIKDKEGYNCGPFQGQCTFPTRDNSPTPFVDMGAKDATSG--IGIGFITDNIILDLQ 542

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E+      +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  T
Sbjct: 543 LSAMEKTGNGEVVSQPKVVTSDKETAKILKGSEIPYQEASSSGATST-SFKEAALSLEVT 601

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +    RI + ++     P        +P     + +  + +  G TIV+ G+  +   
Sbjct: 602 PQITPDNRIIVEVKVTKDAPDFQNALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQT 661

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           +  + +P L  +P LG LFR    +  + E+ +  TP ++   A+
Sbjct: 662 KAVDKVPFLGDLPYLGRLFRRDTVSDTKNELLVFLTPRIMNNQAI 706


>gi|221202224|ref|ZP_03575259.1| general secretion pathway protein D [Burkholderia multivorans
           CGD2M]
 gi|221208715|ref|ZP_03581714.1| general secretion pathway protein D [Burkholderia multivorans CGD2]
 gi|221214336|ref|ZP_03587308.1| general secretion pathway protein D [Burkholderia multivorans CGD1]
 gi|221165991|gb|EED98465.1| general secretion pathway protein D [Burkholderia multivorans CGD1]
 gi|221171347|gb|EEE03795.1| general secretion pathway protein D [Burkholderia multivorans CGD2]
 gi|221178018|gb|EEE10430.1| general secretion pathway protein D [Burkholderia multivorans
           CGD2M]
          Length = 768

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 112/316 (35%), Gaps = 56/316 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V++ L+     QV ++  I E+      Q+G Q  +   +     + AA  G      
Sbjct: 389 RAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQVASGALLAGTNLAATAGSVAGNS 447

Query: 236 ------GKFVSEGGDFSVKGVLDRFS-------------------FETVLHALERATAIR 270
                 G   S  G  +  G+    +                      +L      +   
Sbjct: 448 IINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLHNMFGVQGLGALLQYFAGVSDAN 507

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTV 322
            L+ P L  +  + A    G      T S S   +  T          D G+ LH  P +
Sbjct: 508 VLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQI 567

Query: 323 LSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              G + L++ TE S       NA   PS+  R   +T+   +G  IVL GL++D     
Sbjct: 568 TDGGILKLQLYTEDSAVDTATTNAQTGPSFTKRSIQSTILADNGEVIVLGGLMQDAYNVS 627

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  IP +G LFR+    R++T + +   P ++               +  D A+
Sbjct: 628 NSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII---------------ADRDTAQ 672

Query: 442 AFFFNRVNKIYGPKEA 457
           A   NR + I G   A
Sbjct: 673 AVTSNRYDYIQGVTGA 688


>gi|170728738|ref|YP_001762764.1| pilus (MSHA type) biogenesis protein MshL [Shewanella woodyi ATCC
           51908]
 gi|169814085|gb|ACA88669.1| pilus (MSHA type) biogenesis protein MshL [Shewanella woodyi ATCC
           51908]
          Length = 562

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 118/278 (42%), Gaps = 28/278 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV- 250
           + QV L+  I EV      Q G +  ++ G       SF     G  +S+    ++ GV 
Sbjct: 283 QRQVILEAKILEVTLSDGYQQGIEWQNVLGHVGDTDISFGTSPSGSGLSDSITSAIGGVT 342

Query: 251 ---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GA 304
              +    F T+++ L+    +  L+ P +TA + Q A    G    + T  SST   G 
Sbjct: 343 SMKISGADFTTMINLLDTQGDVDVLSSPRVTATNNQKAVIKVGKDEYFVTDVSSTTVAGT 402

Query: 305 TSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY------ 351
           T VT+ +        G+ L  TP +   G I L I   V           +         
Sbjct: 403 TPVTSPEVELTPFFSGIALDVTPQIDGEGNILLHIHPSVINIKEQTKTIKISGSELELPL 462

Query: 352 ---RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
               +R++DT ++  +G  +V+ GL+K +   L   +PLL  IP++G LF N   + ++T
Sbjct: 463 AQSDIRESDTVIKAKTGEVVVIGGLMKSENIDLVSKVPLLGDIPLVGELFTNRSKSLQKT 522

Query: 409 EIFIAATPFLVK-PVAMRDLSRPD---DHYSVEDDAKA 442
           E+ +   P +V+     ++L R     D +  ED+ + 
Sbjct: 523 ELVLLLKPTVVEADTWKQELKRSKELLDRWYPEDEQEQ 560


>gi|281412148|ref|YP_003346227.1| type II and III secretion system protein [Thermotoga naphthophila
            RKU-10]
 gi|281373251|gb|ADA66813.1| type II and III secretion system protein [Thermotoga naphthophila
            RKU-10]
          Length = 1282

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 115/262 (43%), Gaps = 6/262 (2%)

Query: 161  VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
            V+    F+  +G ++        ++  L    + QV +   I  V R ++ ++  +  + 
Sbjct: 1026 VDSLNNFMVVTGISETIKKELDDIIEKLKKPTK-QVEISAKI--VDRSLIDRLSKETVLE 1082

Query: 221  GSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +    +   +      FV++  DF  + G +   +        +  T    LA P +  
Sbjct: 1083 LTGGNVNVGSSGAGISFFVTDYLDFEKILGEILNSNLSLQFSDQKTNTLDDILASPRIVT 1142

Query: 280  ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
             SG+ A    G +  Y T ++  G   V   + G+ L  TP V S   I L +  + SEP
Sbjct: 1143 TSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELDLFVKASEP 1202

Query: 340  VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               +N  ++P  R R+A T + + +G TI + GL+++     +  +P L  +P++G  FR
Sbjct: 1203 GNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLPFLGDLPVIGQFFR 1260

Query: 400  NSRFNREETEIFIAATPFLVKP 421
                N+E+ ++ I  T  +V+P
Sbjct: 1261 TKSENKEKRDLVIFLTVKVVEP 1282


>gi|325521649|gb|EGD00419.1| general secretion pathway protein D [Burkholderia sp. TJI49]
          Length = 699

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 112/316 (35%), Gaps = 56/316 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--- 238
           + V++ L+     QV ++  I E+      Q+G Q  +   +     + AA  G      
Sbjct: 390 RAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQVASGALLAGTNLAATAGSVAGNS 448

Query: 239 ---VSEGGDFSVKGVLDRFSFETVLHALERA-------------------------TAIR 270
              ++ G   S  G L        L  L +                          +   
Sbjct: 449 IINLTAGTVNSSTGTLTGVGLPANLSNLNQGLNIGWLHNMFGVQGLGALLQYFAGVSDAN 508

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTV 322
            L+ P L  +  + A    G      T S S   +  T          D G+ LH  P +
Sbjct: 509 VLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQI 568

Query: 323 LSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              G + L++ TE S       NA   PS+  R   +T+   +G  IVL GL++D     
Sbjct: 569 TEGGILKLQLYTEDSAVDTATTNAQTGPSFTKRSIQSTILADNGEVIVLGGLMQDAYNVS 628

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  IP +G LFR+    R++T + +   P ++               S  D A+
Sbjct: 629 NSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII---------------SDRDTAQ 673

Query: 442 AFFFNRVNKIYGPKEA 457
           A   NR + I G   A
Sbjct: 674 AVTANRYDYIQGVTGA 689


>gi|161523243|ref|YP_001578255.1| general secretion pathway protein D [Burkholderia multivorans ATCC
           17616]
 gi|160340672|gb|ABX13758.1| general secretion pathway protein D [Burkholderia multivorans ATCC
           17616]
          Length = 775

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 112/316 (35%), Gaps = 56/316 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V++ L+     QV ++  I E+      Q+G Q  +   +     + AA  G      
Sbjct: 396 RAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQVASGALLAGTNLAATAGSVAGNS 454

Query: 236 ------GKFVSEGGDFSVKGVLDRFS-------------------FETVLHALERATAIR 270
                 G   S  G  +  G+    +                      +L      +   
Sbjct: 455 IINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLHNMFGVQGLGALLQYFAGVSDAN 514

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTV 322
            L+ P L  +  + A    G      T S S   +  T          D G+ LH  P +
Sbjct: 515 VLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQI 574

Query: 323 LSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              G + L++ TE S       N+   PS+  R   +T+   +G  IVL GL++D     
Sbjct: 575 TDGGILKLQLYTEDSAVDTATTNSQTGPSFTKRSIQSTILADNGEVIVLGGLMQDAYNVS 634

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  IP +G LFR+    R++T + +   P ++               +  D A+
Sbjct: 635 NSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII---------------ADRDTAQ 679

Query: 442 AFFFNRVNKIYGPKEA 457
           A   NR + I G   A
Sbjct: 680 AVTSNRYDYIQGVTGA 695


>gi|264676762|ref|YP_003276668.1| general secretion pathway protein D [Comamonas testosteroni CNB-2]
 gi|262207274|gb|ACY31372.1| general secretion pathway protein D [Comamonas testosteroni CNB-2]
          Length = 793

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 112/294 (38%), Gaps = 43/294 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------------ITG 221
           + V++ L+     QV ++  I EV  D   Q+G Q S                       
Sbjct: 420 RTVIDKLD-GRRAQVLIEALIVEVSADKAAQLGVQWSSVIRNNGRVLGVLGNGTSISGIS 478

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKG-----------VLDRFSFETVLHALERATAIR 270
           +  G S +      G  +++    ++ G           V    S   +++ ++      
Sbjct: 479 NIFGLSGAVGNLVNGTPLTDSQASAIGGMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTN 538

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPT 321
            L+ P L  +  + AS   G    + T S +  A         T+    D G +L   P 
Sbjct: 539 ILSTPNLMTLDNEEASIMVGENVPFPTGSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQ 598

Query: 322 VLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +   G I + +  E S    G  NA    +   R  ++ V +  G  +VL GL+ D+  Q
Sbjct: 599 INENGTIKMAVYQENSAVKQGTANAQSGATTTKRSIESNVLVEDGAIVVLGGLIADEYSQ 658

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            +E +PLL  IP+LG LFRN+   R++T + +   P +++           D Y
Sbjct: 659 SQERVPLLGDIPLLGNLFRNTSRERKKTNLMVFLRPTVLRDANSTS-QLSQDRY 711


>gi|295677888|ref|YP_003606412.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1002]
 gi|295437731|gb|ADG16901.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1002]
          Length = 572

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 97/242 (40%), Gaps = 15/242 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGG-----------KF 238
               QV ++  I E  +   + +G + S+ G+S+ G S+       G            F
Sbjct: 332 RPTRQVLIEAQIVEGEQGFSRNLGVRLSLAGTSADGTSRGLTGGTDGTVYDLSARPISGF 391

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++            L ALE     + ++ P +       A    G +  Y+  
Sbjct: 392 DAATAGLTLFAAHATRLLNIELSALESEGHGKIVSSPRVVTADRMKAIVEQGTELPYQ-A 450

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P ++  GR+ L +           +AG  P+   +   T
Sbjct: 451 KVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGEQTDAG--PAINTKHVQT 508

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+  GGT+ + G+ + D +   E +P+L KIP+LGALFR+       +E+ +  TP +
Sbjct: 509 RVEVEDGGTVSIGGIYETDDRDDVERVPVLGKIPVLGALFRHRTHRDTRSELAVFITPRV 568

Query: 419 VK 420
           V+
Sbjct: 569 VR 570


>gi|170681179|ref|YP_001745227.1| general secretion pathway protein GspD [Escherichia coli SMS-3-5]
 gi|170518897|gb|ACB17075.1| general secretion pathway protein GspD [Escherichia coli SMS-3-5]
          Length = 686

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|328952531|ref|YP_004369865.1| general secretion pathway protein D [Desulfobacca acetoxidans DSM
           11109]
 gi|328452855|gb|AEB08684.1| general secretion pathway protein D [Desulfobacca acetoxidans DSM
           11109]
          Length = 794

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 123/301 (40%), Gaps = 35/301 (11%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           T ++  R +   E  L       Y      +++  L+I    QV  +V IAEVR     +
Sbjct: 452 TPKEGVRIIPDEENNLLVIMAPPYEWKIISRLLKQLDIM-PRQVLNEVLIAEVRLTDDLK 510

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET-------------- 258
            G +  +  S +  ++S + + G    S      V G +      +              
Sbjct: 511 YGLEFLLGQSPTTATESTSDNSGALVASSTSTTIVPGTIQGVDINSPASAQFAAASGLTF 570

Query: 259 -----------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVS 299
                      +++ L     +  LA P + A + Q A    G +            + +
Sbjct: 571 VALDTANKLKGLINLLSSEGKVNILASPHIMAANNQEARIMIGEEVPILSSQSIPLVSQT 630

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADT 358
           +S    +V   + G++L   P + + G + L I  EVS            P++ VR A T
Sbjct: 631 TSFQTNTVQYRNTGIILTVKPQINAKGLVTLEIAQEVSNATATTTGVTSSPTFTVRHAKT 690

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            +      T+VL GL+++D+ + + GIP L +IP+LG LF ++  +R++TE+ +  TP +
Sbjct: 691 QLITGDNQTVVLGGLIREDLTETQAGIPGLRRIPLLGPLFGSTGVSRQKTELVVLITPHI 750

Query: 419 V 419
           V
Sbjct: 751 V 751


>gi|291614284|ref|YP_003524441.1| type II and III secretion system protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291584396|gb|ADE12054.1| type II and III secretion system protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 851

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 158/427 (37%), Gaps = 68/427 (15%)

Query: 53  GLNKVIILQVPVDVQ-DVLVSDPTKADV------------VVHSPRTMYLFGKNVGQANV 99
           G+N ++   +  D++  + V D + AD              V +  T++++     +   
Sbjct: 206 GINILLDRDMRNDLKASIFVKDASVADALDLILMQNQLEKKVLNDSTVFIYPNTPAK--- 262

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            +  +    +    +    D   ++  ++  +   +I V   ++++++        D+  
Sbjct: 263 -IKEYQDLVIRTFQLT-NADAKQMQTMIKTMLKTKDIYVNEKNNSLIIR-------DTPE 313

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           AV+++E  ++    N                  E +V L+V + EV    L Q+G +   
Sbjct: 314 AVKMAEKLIASQDIN------------------EPEVMLEVEVLEVLHSKLTQLGVKWPN 355

Query: 220 T-------------GSSSGPSKSFAADFGGKFVSEGGDFSVKG-VLDRFSFETVLHALER 265
                          +++        +     ++  G   + G  ++       L   + 
Sbjct: 356 QLGLSVNATPATSTATTTSGGAVVTTNTPAVPLTVNGLRHINGDAINVTPLSMTLDLRKE 415

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHF 318
                 LA P +     + A    G +    T S +  AT       SV   D G+ L  
Sbjct: 416 LGDSNLLASPRIRVKQHEKAKIMIGDRVPVITNSVTPVATGTPVVTGSVQYLDVGLKLEV 475

Query: 319 TPTVLSPGRI----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            P +   G +     L + T  ++     +         R  +T + L  G T VLAGL+
Sbjct: 476 EPDIHMDGEVAIKTYLEVSTIANQVTNAASGSVAYQIGTRNVNTVLRLKDGETQVLAGLI 535

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            D+ ++    +P L  +PILG LF ++  ++ +TEI ++ TP +++ +   D+   +   
Sbjct: 536 NDEDRKSSASVPGLGDLPILGHLFSSNGDDKRKTEIILSITPHIIRNIHRPDVDLAEFWS 595

Query: 435 SVEDDAK 441
             ED  +
Sbjct: 596 GTEDTLR 602


>gi|191171834|ref|ZP_03033380.1| general secretion pathway protein GspD [Escherichia coli F11]
 gi|215488288|ref|YP_002330719.1| putative type II secretion protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312968706|ref|ZP_07782915.1| general secretion pathway protein D [Escherichia coli 2362-75]
 gi|190907869|gb|EDV67462.1| general secretion pathway protein GspD [Escherichia coli F11]
 gi|215266360|emb|CAS10797.1| putative type II secretion protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312286924|gb|EFR14835.1| general secretion pathway protein D [Escherichia coli 2362-75]
 gi|312947523|gb|ADR28350.1| general secretion pathway protein D precursor [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|320195111|gb|EFW69740.1| General secretion pathway protein D [Escherichia coli WV_060327]
          Length = 686

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|189348900|ref|YP_001944528.1| general secretion pathway protein D [Burkholderia multivorans ATCC
           17616]
 gi|189332922|dbj|BAG41992.1| general secretion pathway protein D [Burkholderia multivorans ATCC
           17616]
          Length = 768

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 112/316 (35%), Gaps = 56/316 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V++ L+     QV ++  I E+      Q+G Q  +   +     + AA  G      
Sbjct: 389 RAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQVASGALLAGTNLAATAGSVAGNS 447

Query: 236 ------GKFVSEGGDFSVKGVLDRFS-------------------FETVLHALERATAIR 270
                 G   S  G  +  G+    +                      +L      +   
Sbjct: 448 IINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLHNMFGVQGLGALLQYFAGVSDAN 507

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTV 322
            L+ P L  +  + A    G      T S S   +  T          D G+ LH  P +
Sbjct: 508 VLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQI 567

Query: 323 LSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              G + L++ TE S       N+   PS+  R   +T+   +G  IVL GL++D     
Sbjct: 568 TDGGILKLQLYTEDSAVDTATTNSQTGPSFTKRSIQSTILADNGEVIVLGGLMQDAYNVS 627

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  IP +G LFR+    R++T + +   P ++               +  D A+
Sbjct: 628 NSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII---------------ADRDTAQ 672

Query: 442 AFFFNRVNKIYGPKEA 457
           A   NR + I G   A
Sbjct: 673 AVTSNRYDYIQGVTGA 688


>gi|296157578|ref|ZP_06840413.1| general secretion pathway protein D [Burkholderia sp. Ch1-1]
 gi|295892350|gb|EFG72133.1| general secretion pathway protein D [Burkholderia sp. Ch1-1]
          Length = 789

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 113/317 (35%), Gaps = 57/317 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+ A   QV L+  I E+  +    +G Q  +  +S     +         V+ 
Sbjct: 394 RAVIDQLD-ARRAQVYLEALIVELNSNTSGNLGIQWQVANNSIFAGTNLQTGSSNSIVNL 452

Query: 242 GGDFS-----------------------------VKGVLDRFSFETVLHALERATAIRTL 272
                                             +  +        +L AL +      L
Sbjct: 453 TAGAVAAGAAGAATGGLASAIGTQGLQQGLNIGWIHNIFGVQGLGALLQALSQTADANVL 512

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLS 324
           + P L  +  + A    G     +T S S   +S  T         D G+ LH  P +  
Sbjct: 513 STPNLITLDNEEAKIVVGTNVPIQTGSYSNLTSSTATSAFNTYDRVDVGLTLHVKPQITD 572

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            G + L++ TE S  V G          P +  R   +TV   +G  IVL GL++D+ Q 
Sbjct: 573 GGILKLQLYTEDSAIVTGTTNATTNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQV 632

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               +PLL  IP +G LFR+ +  R +T + +   P ++               S    A
Sbjct: 633 SNSKVPLLGDIPWIGQLFRSEQKTRNKTNLMVFLRPVII---------------SDRGTA 677

Query: 441 KAFFFNRVNKIYGPKEA 457
           +A   NR + I G + A
Sbjct: 678 QAVTSNRYDYIQGVQGA 694


>gi|221134989|ref|ZP_03561292.1| general secretion pathway protein D [Glaciecola sp. HTCC2999]
          Length = 693

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 118/305 (38%), Gaps = 46/305 (15%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------- 217
           S ++V+  L++    QV ++  I EV       +G Q                       
Sbjct: 347 SLEEVIRQLDVR-RAQVQVEAIIVEVFEGDGTTLGVQLVSEEGGGTQFTNGVAGVGSLGV 405

Query: 218 ---------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                          +  GS+     +   DF       GG   +   +    +  V+ A
Sbjct: 406 ALRQAEDREVNRSTTAQDGSAVQAIDTIEGDFTALANILGGANGMIAGIIENGWGAVVQA 465

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317
           +   T    LA P LT +  + A F  G +    T +S+         +V   + G+ L 
Sbjct: 466 VSTDTNSNILATPHLTTMDNEEAFFIVGQEVPIITGTSTGSNNSNPFQTVDRQEVGIKLK 525

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP +     + L I+ EVS      +     S   R+  TTV +  GGTIVL GL+ +D
Sbjct: 526 VTPQINEGDAVQLLIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDED 583

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSV 436
           +Q+    +PLL  IP +G LF+ +  ++ +  + +   P +V+  V M ++S    ++  
Sbjct: 584 VQESVSKVPLLGDIPFVGHLFKTTTSSKRKRNLMVFLRPTIVRDGVTMNEISHRKYNFIR 643

Query: 437 EDDAK 441
            +  K
Sbjct: 644 AEQLK 648


>gi|331684607|ref|ZP_08385199.1| general secretion pathway protein D [Escherichia coli H299]
 gi|331078222|gb|EGI49428.1| general secretion pathway protein D [Escherichia coli H299]
          Length = 686

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|238756264|ref|ZP_04617580.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
 gi|238705519|gb|EEP97920.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
          Length = 660

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 106/285 (37%), Gaps = 18/285 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++V+  L+I    QV ++  I EV+ +    +G Q        G +            + 
Sbjct: 351 EQVITQLDIR-RAQVLVEAIIVEVQDNDDLNLGVQW-FNRHGGGSNFPDTGASASSISAN 408

Query: 242 GGDFSVKGVLD------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
               S+ GV        R ++  +  AL   +    LA P++  +    A F+ G +   
Sbjct: 409 NIGSSLNGVAGLATGFYRGNWSGLFTALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPI 468

Query: 296 KTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDM 348
            T S +T       +V     G+ L   P +     + L I+ EVS       G      
Sbjct: 469 LTGSQTTTGDNIFRTVDRKSVGIKLKVKPQINKGDSVLLEIEQEVSSVAEKTPGGTGDLG 528

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            ++  R     V + S   +V+ GLL      +   +PLL  IP +G LFR++     + 
Sbjct: 529 ATFNTRTVKNAVMVGSNNIVVVGGLLDSTSHDITSKVPLLGDIPGIGFLFRSTSQKMVKR 588

Query: 409 EIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFN-RVNK 450
            + +   P +++     +    +  D +  E  A       RVN+
Sbjct: 589 NLMLFIRPTIIREQDSYIDASQQKLDKFRQEQGADKGANGQRVNE 633


>gi|323960851|gb|EGB56471.1| general secretion pathway protein D [Escherichia coli H489]
          Length = 686

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|331659244|ref|ZP_08360186.1| general secretion pathway protein D [Escherichia coli TA206]
 gi|331053826|gb|EGI25855.1| general secretion pathway protein D [Escherichia coli TA206]
          Length = 686

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|167560915|ref|ZP_02353831.1| general secretion pathway protein D [Burkholderia oklahomensis
           EO147]
          Length = 743

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 115/305 (37%), Gaps = 45/305 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFV 239
           + V++ L+ A   QV ++  + E+       +G Q  +  ++  +G + +     GG  +
Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLTTGGVGGGNSI 445

Query: 240 SE-----GGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTLTAIS 281
           +          +V G L                    +L      +    L+ P L  + 
Sbjct: 446 TSLTAGATNPLNVVGALTPGLNIGWLRNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTLD 505

Query: 282 GQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            + A    G      T S        ++    +    D G+ LH  P +   G + L++ 
Sbjct: 506 NEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITDGGILKLQLY 565

Query: 334 TEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           TE S  V G   +   P++  R   +TV   +G  IVL GL++D+ Q     +PLL  IP
Sbjct: 566 TEDSSVVNGTLTSQTGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVANNKVPLLGDIP 625

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
            +G LFR+    R +T + +   P ++                  + A+A   NR + I 
Sbjct: 626 WIGQLFRSEGKTRTKTNLMVFLRPVII---------------GDRETAQAVTSNRYDYIQ 670

Query: 453 GPKEA 457
           G   A
Sbjct: 671 GVTGA 675


>gi|293416407|ref|ZP_06659046.1| general secretion pathway protein D [Escherichia coli B185]
 gi|291431763|gb|EFF04746.1| general secretion pathway protein D [Escherichia coli B185]
          Length = 686

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGANNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGHLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|221069105|ref|ZP_03545210.1| general secretion pathway protein D [Comamonas testosteroni KF-1]
 gi|220714128|gb|EED69496.1| general secretion pathway protein D [Comamonas testosteroni KF-1]
          Length = 793

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 113/294 (38%), Gaps = 43/294 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------------ITG 221
           + V++ L+     QV ++  I EV  D   Q+G Q S                       
Sbjct: 420 RTVIDKLD-GRRAQVLIEALIVEVSADKAAQLGVQWSSVIRNNGRVLGVLGNGTSISGIS 478

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKG-----------VLDRFSFETVLHALERATAIR 270
           +  G S +      G  +++    ++ G           V    S   +++ ++      
Sbjct: 479 NIFGLSGAVGNLVNGTPLTDSQASAIGGMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTN 538

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPT 321
            L+ P L  +  + AS   G    + T S +  A         T+    D G +L   P 
Sbjct: 539 ILSTPNLMTLDNEEASIMVGENVPFPTGSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQ 598

Query: 322 VLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +   G I + +  E S    G  NA    +   R  ++ V +  G  +VL GL+ D+  Q
Sbjct: 599 INENGTIKMAVYQENSAVKQGTANAQSGATTTKRSIESNVLVEDGAIVVLGGLIADEYSQ 658

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            +E +PLL  IP+LG LFRN+   R++T + +   P +++  +        D Y
Sbjct: 659 SQERVPLLGDIPLLGNLFRNTSRARKKTNLMVFLRPTVLRDASSTS-QLSQDRY 711


>gi|134294193|ref|YP_001117928.1| general secretion pathway protein D [Burkholderia vietnamiensis G4]
 gi|134137350|gb|ABO53093.1| general secretion pathway protein D [Burkholderia vietnamiensis G4]
          Length = 774

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 114/309 (36%), Gaps = 49/309 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------SIT 220
           + V++ L+ A   QV ++  I E+       +G Q                      SI 
Sbjct: 397 RSVIDQLD-ARRAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPTSGLGNSIV 455

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---SFETVLHALERATAIRTLAEPTL 277
             ++G + +          +     ++  + + F   S   +L      +    L+ P L
Sbjct: 456 NLTAGTAGATTPGLAANLGTLTQGLNIGWLHNLFGVQSLGALLQYFAGVSDANVLSTPNL 515

Query: 278 TAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             +  + A    G      T S        +S    +    D G+ LH  P +   G + 
Sbjct: 516 ITLDNEEAKIVVGQNVPIATGSYLNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILK 575

Query: 330 LRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           L++ TE S  V G  +    P++  R   +T+   +G  IVL GL++D+ Q     +PLL
Sbjct: 576 LQLYTEDSAVVAGTTSAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLL 635

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP +G LFR+    R +T + +   P ++               S  + A+    NR 
Sbjct: 636 GDIPWIGQLFRSESKQRAKTNLMVFLRPVII---------------SDRNVAQEVTANRY 680

Query: 449 NKIYGPKEA 457
           + I G   A
Sbjct: 681 DYIQGVTGA 689


>gi|332085659|gb|EGI90823.1| putative general secretion pathway protein D domain protein
           [Shigella dysenteriae 155-74]
          Length = 303

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 110/293 (37%), Gaps = 23/293 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            ++  I EV+      +G Q S         +++G     AA     +   GG  S    
Sbjct: 2   LVEAIIVEVQDGNGLNLGVQWSNKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPA 61

Query: 251 LDRFS-------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
            D FS             +  +L AL        LA P++  +  + ASF  G       
Sbjct: 62  WDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLS 121

Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
             +T S      +V     G  L  TP V     + L I+ EVS      N+   P++  
Sbjct: 122 GSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNT 181

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V + +G T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + + 
Sbjct: 182 RTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVF 241

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
             P +++   +      + +     + +     +   + G ++   ++   + 
Sbjct: 242 IRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKSKALVGSEDLPVLDENTFN 294


>gi|218691255|ref|YP_002399467.1| general secretion pathway protein D [Escherichia coli ED1a]
 gi|218428819|emb|CAR09618.1| general secretion pathway protein D precursor [Escherichia coli
           ED1a]
          Length = 686

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|190572747|ref|YP_001970592.1| putative general secretion pathway protein D [Stenotrophomonas
           maltophilia K279a]
 gi|190010669|emb|CAQ44278.1| putative general secretion pathway protein D precursor
           [Stenotrophomonas maltophilia K279a]
          Length = 733

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 129/315 (40%), Gaps = 27/315 (8%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
             V +   V   +    AVE + T L +S    +   S ++V+  L++    QV ++  +
Sbjct: 408 GNVSVSLEVEGDRVGVSAVEETNTLLVRSTPQAW--RSIREVIEKLDVM-PLQVHIEAQV 464

Query: 203 AEVRRDILKQIGFQHSITGSSSG-------PSKSFAADFGGKFVSEGGDFS----VKGVL 251
           AEV  D   + G       + +G          +  A  GG + S  G  +    +    
Sbjct: 465 AEVSLDGDLKYGVNWFFDNAVAGRALTGALGGVTLPAAAGGSWSSFAGAATGGEGLGWAF 524

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TS 306
              +   V+ AL++ T +R L  P++   +   A+   G +    T + +TG      +S
Sbjct: 525 TGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGDKVPINTTTVNTGIGTGTYSS 584

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAGDMPSYRVRKADTTV 360
           V   D GV+L   P V   G + L I  EVS                 P    +K  T  
Sbjct: 585 VQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASNVPDNCNPTERNCNPRISTKKLSTEA 644

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + SG TI+LAGL+ D       GIP LS+IP++GALF         +E+ +  TP +V+
Sbjct: 645 AVQSGDTIMLAGLITDSATDGSSGIPGLSRIPVVGALFGQKSRTSRRSEVIVLLTPSIVR 704

Query: 421 PVAMRDLSRPDDHYS 435
               ++     D YS
Sbjct: 705 N--GQEARNLTDEYS 717


>gi|170288656|ref|YP_001738894.1| type II and III secretion system protein [Thermotoga sp. RQ2]
 gi|170176159|gb|ACB09211.1| type II and III secretion system protein [Thermotoga sp. RQ2]
          Length = 1282

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 115/262 (43%), Gaps = 6/262 (2%)

Query: 161  VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
            V+    F+  +G ++        ++  L    + QV +   I  V R ++ ++  +  + 
Sbjct: 1026 VDSLNNFMVVTGISETIKKELDDIIEKLKKPTK-QVEISAKI--VDRSLIDRLSKETVLE 1082

Query: 221  GSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +    +   +      FV++  DF  + G +   +        +  T    LA P +  
Sbjct: 1083 LTGGNVNVGSSGAGISFFVTDYLDFEKILGEILNSTLSLQFSDQKTNTLDDILASPRIVT 1142

Query: 280  ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
             SG+ A    G +  Y T ++  G   V   + G+ L  TP V S   I L +  + SEP
Sbjct: 1143 TSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELDLFVKASEP 1202

Query: 340  VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               +N  ++P  R R+A T + + +G TI + GL+++     +  +P L  +P++G  FR
Sbjct: 1203 GNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLPFLGDLPVIGQFFR 1260

Query: 400  NSRFNREETEIFIAATPFLVKP 421
                N+E+ ++ I  T  +V+P
Sbjct: 1261 TKSENKEKRDLVIFLTVRVVEP 1282


>gi|329895109|ref|ZP_08270837.1| General secretion pathway protein D [gamma proteobacterium
           IMCC3088]
 gi|328922510|gb|EGG29849.1| General secretion pathway protein D [gamma proteobacterium
           IMCC3088]
          Length = 672

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 70/320 (21%), Positives = 119/320 (37%), Gaps = 51/320 (15%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----------------SITG 221
           ++ + V+  L+I    QV ++  I E+     + +G Q                  S  G
Sbjct: 336 AALESVIYQLDIR-RAQVLVEAIIVEMEVIDGQSLGLQWLFANDSGVYGSSVSSDVSTAG 394

Query: 222 SSSGPSKSFAADFGGKFV-------------SEGGDFSVKGVLDRFSFETVLHALERATA 268
           + S       AD                   S G       + +  S   +L+AL++ + 
Sbjct: 395 AISSAVLGGNADAANPVGDFDLGQLAAALAGSPGLTLGWGAIDNDLSMTVILNALKKQSN 454

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHF 318
              L+ PTL  +  Q A  T G    + T + +   +          ++   + G+ L  
Sbjct: 455 ANILSTPTLLTLDNQEAYITVGQNVPFVTGAYTNTGSGGSGVQNPFQTIERENVGITLTV 514

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           TP +     + L I+ EVS      +         RK  T V    G T+VL GL+KD++
Sbjct: 515 TPHINDGDSVVLDIEQEVSSLTGLSSIASDLITNERKIQTKVLAGDGKTVVLGGLIKDNV 574

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q   + +P+L  IP+LG LFRN      +T + I   P +++          DD      
Sbjct: 575 QDGSQRVPVLGSIPLLGRLFRNDAVEVTKTNLLIFIRPTIIR----------DDRALDNA 624

Query: 439 DAKAFFFNRVNKIYGPKEAS 458
            A  + F R  ++    + S
Sbjct: 625 TAGKYKFIREQQLQRRAKGS 644


>gi|170765481|ref|ZP_02900292.1| general secretion pathway protein GspD [Escherichia albertii
           TW07627]
 gi|170124627|gb|EDS93558.1| general secretion pathway protein GspD [Escherichia albertii
           TW07627]
          Length = 686

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPETN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|238022253|ref|ZP_04602679.1| hypothetical protein GCWU000324_02160 [Kingella oralis ATCC 51147]
 gi|237866867|gb|EEP67909.1| hypothetical protein GCWU000324_02160 [Kingella oralis ATCC 51147]
          Length = 699

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 99/260 (38%), Gaps = 24/260 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF--------------QHSIT------G 221
             ++  L++    QV ++  I E    + +++G                  +       G
Sbjct: 433 NALIEELDVP-ARQVMVEARIVEASDTLSRELGVKFGGVRAGSTSWANNWGLATERNSRG 491

Query: 222 SSSGPSKS-FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
             +G S   F  +      S  G  +V       +    L A E     +T++ P +   
Sbjct: 492 VRNGSSGVLFEPNINVPVASAVGSIAVVKSFSSVTLGLELSASEAEGRSKTISTPRVLTQ 551

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
             Q A    G Q  Y T   S G+T+ +  D  + L   P +    +I + +      P 
Sbjct: 552 DRQEAEIKQGYQVPY-TTRDSDGSTTTSFKDAVMSLKVLPRITPDNKIIMDVTINKDTPD 610

Query: 341 IGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               + +  PS R +   T   +  GGT+V+ G+ ++ IQ   + +P+L  +P+LG LF+
Sbjct: 611 NTYQSSEGEPSIRTQSVKTQAMIEDGGTLVVGGVYQEVIQNNVKKVPMLGDLPVLGNLFK 670

Query: 400 NSRFNREETEIFIAATPFLV 419
               N    E+    TP ++
Sbjct: 671 TRSRNNSRNELLFFITPRIM 690


>gi|298527731|ref|ZP_07015135.1| general secretion pathway protein D [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511383|gb|EFI35285.1| general secretion pathway protein D [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 703

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/346 (22%), Positives = 132/346 (38%), Gaps = 34/346 (9%)

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ-- 158
           ++G  G+ +    +    D   +  +LR    D  +  +       +   V +  D    
Sbjct: 340 ILGSAGENIYVYYVQYG-DAEEIVESLRGVF-DQGVEADSEVGREAVS-EVASEDDQDVF 396

Query: 159 ---------------RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
                               + + +++     YA   S  VM  L++    QV ++V IA
Sbjct: 397 APGMVSGELAGPVRFTVDRATNSIITRCRAPDYARVLS--VMEKLDL-YPKQVLIEVIIA 453

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           EVR     ++G        S G   S    F     +  G   V  V      +  L+A 
Sbjct: 454 EVRLSDATKMGVDWQYI-LSFGDRLSGELRFDPAADALPGAGGVFRVESSRRLKAALYAA 512

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTGATSVTTHDYGV 314
                ++ L+ PTL A   + A+   G Q  + T +         S    T++   D G+
Sbjct: 513 VDDAKLQILSTPTLLASDNRPATINIGDQVPFPTSTRQRLDDTDTSEVIDTTIQYRDTGI 572

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           +L  TP +   G + + I  EVS      V     P    R A+TT+ +    TIV+AGL
Sbjct: 573 ILRVTPKINRHGMVRMEIVQEVSSLTARRVEGITAPVINTRHAETTLAVDDQETIVIAGL 632

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++ +  +   G+P   +IP++  LF  S    E TE+ +  TP ++
Sbjct: 633 MEQERSRGYSGVPGFRRIPVVKHLFGTSETRFENTELLVFITPHVI 678


>gi|304310058|ref|YP_003809656.1| General secretion pathway D protein, outer membrane secretin [gamma
           proteobacterium HdN1]
 gi|301795791|emb|CBL43990.1| General secretion pathway D protein, outer membrane secretin [gamma
           proteobacterium HdN1]
          Length = 721

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 133/390 (34%), Gaps = 48/390 (12%)

Query: 77  ADVVVHSPRTMYLFGKNVGQ-ANVILIGHDGKQMLNLD--ILIERDIAHLEMTLRRFIAD 133
           AD V  S     L G   GQ          G Q  +           A L       ++ 
Sbjct: 288 ADAVKISE---VLRGIVTGQATTPTSTTAGGMQTASRTPGSSFGNSSAGLGGNSSMGMSG 344

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAG 192
           + +            G    IQ     ++  +T  +   R   ++    + ++  L++  
Sbjct: 345 AGVSSSTSRQ----RGTSTPIQAGNITIQADDTLNALVVRASPSDMGEIRSLIKQLDVR- 399

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITG--------SSSGPSKSFAADFGGKF------ 238
             QV ++  I EV       +G Q             + S    S +A  G         
Sbjct: 400 RAQVLIEAAIVEVTGSAGNSLGVQWGAANENRVVGGTNFSNVGNSISALLGAALSSSGSD 459

Query: 239 ------------VSEGGDFSVKG----VLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                        +     ++ G       +  F  +L A+  A+    L+ P++  +  
Sbjct: 460 STGTTSSTTTTMPTLSNGITLGGGHRNSAGKVDFGLILQAVNTASNTNVLSTPSIMTLDN 519

Query: 283 QSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           + A    G    + T      S +    +V   D G+ L   P V +   I LR+  E S
Sbjct: 520 EEAEILVGQNVPFITGNQLSYSGTNPFQTVERKDVGLNLKVIPQVNAGDTISLRVTQEAS 579

Query: 338 EPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                 N          R  +TT+    G  IVL GL++D +    + +PLL  IP++GA
Sbjct: 580 SIADSSNVKTTDVITNKRLINTTILASDGQVIVLGGLMEDTLSDAVQKVPLLGDIPLIGA 639

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           LFR++   +E+  + +   P +++  A  +
Sbjct: 640 LFRSTSKVQEKRNLLLFLRPTVIRDDAKAE 669


>gi|330938340|gb|EGH41971.1| type II and III secretion system protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 247

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 8/233 (3%)

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
             +                +F++           +++A+E +    TLA P+L A++GQS
Sbjct: 6   NVTPGAVGGITPSIPLNNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQS 65

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---- 340
           ASF +GG+      +      S+   ++GV L  TPTV+   RI L++  EVSE      
Sbjct: 66  ASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAG 125

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           I +    +P+  +R+ DT++ L  G + V++GL+        +  P L  IPILGA FR+
Sbjct: 126 ITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRS 185

Query: 401 SRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSV--EDDAKAFFFNRVN 449
           S+  R+E E+ +  TP LV+P+A   R  S P +          + +F    +
Sbjct: 186 SQIQRDERELLMIVTPHLVQPLAANARLPSLPGEGLRTYDPSFPRLYFLENGD 238


>gi|126176026|ref|YP_001052175.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS155]
 gi|217971714|ref|YP_002356465.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS223]
 gi|125999231|gb|ABN63306.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS155]
 gi|217496849|gb|ACK45042.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS223]
          Length = 559

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 116/296 (39%), Gaps = 23/296 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  ++    + ++ V   +  L             +  +N      + QV L+  I EV 
Sbjct: 240 LTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEVT 299

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHA 262
                Q G Q        G +        G  +S+    ++ GV    +    F T+++ 
Sbjct: 300 LSDGYQQGIQWDNVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMINL 359

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312
           L+    +  L+ P +TA + Q A    G    + T  SST   G   VTT          
Sbjct: 360 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVGGTPPVTTPQVELTPFFS 419

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELP 363
           G+ L  TP + S G + L +   V +                  +    +R++DT +   
Sbjct: 420 GIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAA 479

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           SG  +++ GL+K +  ++   +PLL  IP LG LF+N    +++TE+ I   P +V
Sbjct: 480 SGDVVIIGGLMKSESIEVVSQVPLLGDIPYLGELFKNRSKQKKKTELIILLKPTVV 535


>gi|323188610|gb|EFZ73895.1| general secretion pathway protein D [Escherichia coli RN587/1]
          Length = 686

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|198283019|ref|YP_002219340.1| type IV pilus secretin PilQ [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665348|ref|YP_002425223.1| fimbrial assembly protein PilQ, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247540|gb|ACH83133.1| type IV pilus secretin PilQ [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517561|gb|ACK78147.1| fimbrial assembly protein PilQ, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 784

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 96/272 (35%), Gaps = 44/272 (16%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS----------ITGSSSGPSKSFAADFGGKFV- 239
               QV ++  I +V     + +G              I   S   +    +  GG +  
Sbjct: 495 RPVPQVLIEARIVQVTTSAAQSLGVNWGGTYTSGGGGGIVNLSGTGATGVTSTQGGAYPM 554

Query: 240 --------------------------------SEGGDFSVKGVLDRFSFETVLHALERAT 267
                                                F++            L AL+   
Sbjct: 555 SGTTTTTGTGFTTPALVNLVPSTAGTALASMNPASLGFALGTAAGNRILNLQLQALQADN 614

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             + ++ P +     + A    G +  Y+  +SS GAT+V+     + L  TP +   G+
Sbjct: 615 RAKIISSPKVLTQDNEKAVIEQGQEIPYQQATSS-GATAVSFKKAVLSLDVTPHISPNGK 673

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I L +     +P              ++  T + + +G T+V+ G+  D   Q + G+PL
Sbjct: 674 ITLDVDARNDQPNYAQAMPSGIPINTQQVKTKLLVNNGQTVVIGGIYTDSTTQNETGVPL 733

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  IP+LG LF++   +  +TE+ +  TP +V
Sbjct: 734 LRDIPLLGWLFKSHINSVAKTELLVFLTPKVV 765


>gi|254038140|ref|ZP_04872198.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
 gi|226839764|gb|EEH71785.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
 gi|323971766|gb|EGB66992.1| general secretion pathway protein D [Escherichia coli TA007]
          Length = 686

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDAN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|323498120|ref|ZP_08103124.1| type IV pilus biogenesis protein PilQ [Vibrio sinaloensis DSM
           21326]
 gi|323316831|gb|EGA69838.1| type IV pilus biogenesis protein PilQ [Vibrio sinaloensis DSM
           21326]
          Length = 561

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 111/264 (42%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGGKFV 239
           + +++ L+I    QV ++  I  V    L ++G +   + ++   +   S  ++     +
Sbjct: 298 RDIIDTLDIP-VKQVQIEARIVTVNEGNLDELGVRWGFSSTNGNNTVGGSIESNLFQAGL 356

Query: 240 SEGGDFSVKGVLDRFSFETVLHA----------------------LERATAIRTLAEPTL 277
            EG    V   L+     T   A                      L+R +    ++ P L
Sbjct: 357 LEGDTLPVDDFLNVNLAATSTTASSIAFQVAKLGSDLLLDLELSALQRESKAEVISSPRL 416

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + + A    G +  Y   SSS+GATSVT     + L  TP +    R+ L +     
Sbjct: 417 ITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQD 475

Query: 338 EP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            P  V+    G+  +   ++  T V + +G T+VL G+ +  +    + +PLL  +P+LG
Sbjct: 476 RPGDVVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHSVTDTVDKVPLLGDLPVLG 535

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR S     ++E+ I  TP +V
Sbjct: 536 ALFRRSYQQMGKSELLIFVTPKVV 559


>gi|332701375|ref|ZP_08421463.1| general secretion pathway protein D [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551524|gb|EGJ48568.1| general secretion pathway protein D [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 746

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 105/256 (41%), Gaps = 17/256 (6%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEG 242
           V+  L+I    QV ++V IAEV      Q+G     +   +   S  F+        + G
Sbjct: 475 VIEKLDI-YPKQVLIEVIIAEVSLTDETQLGIDWRYLLDMTGNASIDFSLSNNPSTFTSG 533

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------- 295
              ++   +D       L AL  +   + L+ P + + +   A    G +          
Sbjct: 534 LAATL---VDGDRLRATLRALASSNRTQILSSPHILSSNHSEAKIDVGQEVPILTQTTET 590

Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPS 350
                  + S+   ++   + G++L  TP +   G + + I  E+S      V A + P 
Sbjct: 591 VDTTDPDNVSSVQQNIQYRNTGILLSVTPHINERGLVRMEISQEISSIEETSVGAINSPL 650

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +R R A TTV +    TIV+ GL++ +    +  +P + +IP+L  LF     + +  E+
Sbjct: 651 FRKRLATTTVVVNDEQTIVIGGLMEQENTDNENNVPFVRRIPLLKYLFGYELKSFDNREL 710

Query: 411 FIAATPFLVKPVAMRD 426
            I  TP +V+     D
Sbjct: 711 LIFITPHVVESREDND 726


>gi|288942699|ref|YP_003444939.1| general secretion pathway protein D [Allochromatium vinosum DSM
           180]
 gi|288898071|gb|ADC63907.1| general secretion pathway protein D [Allochromatium vinosum DSM
           180]
          Length = 733

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 123/297 (41%), Gaps = 17/297 (5%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILK 211
             +   +V +    ++ S   + +    KK+++ L        QV ++ TI E+      
Sbjct: 429 ELEMSSSVNIVADAVNNSLLVRASPRDYKKILDALKQLDILPLQVLVEATIVEITLSGSL 488

Query: 212 QIGFQHSITGSSSGP--SKSFAADFGGKFVSEGG----DFSVKGVLDRFSFETVLHALER 265
           + G Q  + G  +      S    F     S  G     F+   V +  + +  L AL  
Sbjct: 489 KYGVQWELFGPGADGKSFASLDGTFDDAETSGIGTMFPGFNWAMVSNPDTIKATLSALAG 548

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGVVLHFT 319
              +  L+ P++  +  Q+A    G +    T      +T+      ++  D GV+L   
Sbjct: 549 DNLLNVLSSPSVMVMDNQTAKIQVGREVPIATSKQDGTSTTDRTYTTISYKDTGVILTVK 608

Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P V   G + L I+ EVS       +  + PS++ R   ++V + S   +VL GL++D  
Sbjct: 609 PRVTPGGLVQLEIEQEVSTVFEENASGLNSPSFKKRTITSSVAVRSNQAVVLGGLIEDTR 668

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
              K+GIP L  +P++G LF  +  +   TE+ +  TP ++     +D+    + + 
Sbjct: 669 SDGKQGIPGLYSLPVVGGLFGETSKSSTRTELVVVLTPKVI--ANDQDIESVTEDFR 723


>gi|309785192|ref|ZP_07679823.1| general secretion pathway protein D [Shigella dysenteriae 1617]
 gi|308926312|gb|EFP71788.1| general secretion pathway protein D [Shigella dysenteriae 1617]
          Length = 681

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 370 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 429

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627


>gi|54310371|ref|YP_131391.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
           SS9]
 gi|46914812|emb|CAG21589.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
           SS9]
          Length = 556

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/317 (24%), Positives = 122/317 (38%), Gaps = 33/317 (10%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           ++E     ++  G  R+I  S +A  +S        R        K+ +++     + QV
Sbjct: 229 QLEKAVQAMIGSGEGRSIVVSPQASLISVRAYPNELRE------VKEFLSVSKKRLKRQV 282

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPS------KSFAADFGGKFVSEGGDFSVKGV 250
            L+  I EV      Q G   S   SS G +         +A  GG  +S          
Sbjct: 283 VLEAKIMEVTLSDGYQQGVNWSNITSSIGGTDIVFGRTGPSALPGGDAISALLGGQTNLT 342

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----------SS 300
           +   +FE VL  LE    +  L+ P +TA + Q A    GG   + T           S+
Sbjct: 343 ISDGNFEAVLSFLETQGDLNVLSSPRVTAANNQKAVIKVGGDQYFVTDISGGEVSGDNST 402

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--------- 351
           S     +T    G+ L  TP +   G + L +   V E V      D+ +          
Sbjct: 403 SAPDIELTPFFSGISLDVTPQIDDEGGVLLHVHPTVVEVVNETKEIDLGATFGVYKLPLA 462

Query: 352 --RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R++D+ +   SG  +V+ GL+K  I      +P L  IP LG LFRN    + +TE
Sbjct: 463 KSSIRESDSVIFARSGDVVVIGGLMKSAINDQVSKVPFLGDIPGLGHLFRNVNKVKSKTE 522

Query: 410 IFIAATPFLVKPVAMRD 426
           + I   P +V     + 
Sbjct: 523 LVILLKPTVVDEQTWQQ 539


>gi|37524117|ref|NP_927461.1| hypothetical protein plu0091 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783540|emb|CAE12386.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 344

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 133/337 (39%), Gaps = 42/337 (12%)

Query: 98  NVILIGH--DGKQMLNL-DILIERDIAHLEMTLRRFIA-----DSNIRVEMVSDTVVLHG 149
           +V L     +  ++ +L  +L   D   + M LR+        +  +  +  +++++L  
Sbjct: 35  SVELFDQSVNETEIQSLSTVLQYADAERIAMNLRQNTPALITKEGKVDFDPETNSLIL-- 92

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
                QD+  A+   +++L +    Q                   QV +   I    R+ 
Sbjct: 93  -----QDTPIAIAQIKSWLKEIDTPQ------------------QQVQITAHIVTSSREA 129

Query: 210 LKQIGFQHSI----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
           L ++G    +      ++S        +           F++  +      E  L ALE+
Sbjct: 130 LHELGIYWGMPIGEQINTSTGINRLNINQAANDNMHRFAFNIARIHTSL-LEMELSALEQ 188

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              +  +A P LTA   Q AS   G    Y  VS     ++V   +  + +  TP +L  
Sbjct: 189 ENQLDIIASPRLTASHQQLASIKQGSDIPY--VSQEKEKSTVQFKEAVLGMEVTPHILRK 246

Query: 326 GRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            +I L ++   + P I ++   G+  +   ++  T V + +G T++L G+ +    +  +
Sbjct: 247 NKIRLSLKISQNMPGISISQGGGENLTIDKQEIITQVTVKNGETLILGGIFQQKKGEQTQ 306

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +P LS IP+LG+LF          E+ I  TP L+ 
Sbjct: 307 KVPYLSDIPLLGSLFNQKAHKHSRRELVIFITPQLMD 343


>gi|330815003|ref|YP_004358708.1| General secretory pathway protein D [Burkholderia gladioli BSR3]
 gi|327367396|gb|AEA58752.1| General secretory pathway protein D [Burkholderia gladioli BSR3]
          Length = 787

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 114/320 (35%), Gaps = 60/320 (18%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236
           + V++ L+     QV ++  I E+       +G Q  +  ++     S  +   G     
Sbjct: 391 RAVIDQLDER-RAQVYIEALIVELNSSTSANLGIQWQVANNALYAGSSLGSGINGVGNTI 449

Query: 237 -----------------------KFVSEGGDFS-VKGVLDRFSFETVLHALERATAIRTL 272
                                    +S G +   +K +        +L A   +     L
Sbjct: 450 TNLTATAATTSLPNGVNSAAAAAATLSPGLNIGWLKNMFGITGLGALLQAFSGSNDANIL 509

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLS 324
           + P L  +  + A    G      T S        +S    +    D G+ LH  P +  
Sbjct: 510 STPNLVTLDNEEARIVVGQNVPIATGSYANLTSGSNSNAFNTFDRQDVGLTLHVKPQITE 569

Query: 325 PGRIGLRIQTEVSEPVIGVNAG-------DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            G + L+I TE S  V    +         +P++  R   +TV   +G  IVL GL++D+
Sbjct: 570 GGILKLQIYTEDSSVVPSATSSGSSSSQVGVPTFNKRSIQSTVLCDNGEIIVLGGLMQDN 629

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
            Q     +PLL  IP +G LFR+    R +T + +   P ++               S E
Sbjct: 630 YQVGNNKVPLLGDIPWIGQLFRSEAKQRSKTNLMVFLRPVIL---------------SDE 674

Query: 438 DDAKAFFFNRVNKIYGPKEA 457
              +A   NR + I G + A
Sbjct: 675 ATTQAVTANRYDYIQGVQGA 694


>gi|163849487|ref|YP_001637530.1| general secretion pathway protein D [Methylobacterium extorquens
           PA1]
 gi|163661092|gb|ABY28459.1| general secretion pathway protein D [Methylobacterium extorquens
           PA1]
          Length = 794

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 22/295 (7%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A E + + +  + RNQY      +++  L+ A   QV L+  IAEV  +   Q G Q  +
Sbjct: 471 ADEANNSLVISATRNQYDKIL--RILGRLD-AMPTQVLLETVIAEVTLNNELQFGVQWFL 527

Query: 220 TGSSS-------GPSKSFAADFGGKFV----SEGGDFSVKGVLDRFSFETVLHALERATA 268
             S S         ++S A    G       +  G      +L+   F  VL+AL+  T 
Sbjct: 528 KNSGSRFNLAQADTNRSVAQGTSGTDALIKAAARGVPGFNYLLNASDFNVVLNALQGVTR 587

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPT 321
           +  ++ P +T +  ++A    G Q      S  +           +   D GV+L  TP 
Sbjct: 588 VNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVILSVTPR 647

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           V   G + L I  EVS+ V    +  + P+ R R+  T+V +  G ++ + G++++  Q 
Sbjct: 648 VNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAVNDGHSLAIGGMVQEKAQI 707

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
             E +PLL  +PI+G  FRN    R  TE+ +   P +++     D    D    
Sbjct: 708 TNESVPLLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEADRIAEDFRQQ 762


>gi|306816695|ref|ZP_07450827.1| general secretion pathway protein D precursor [Escherichia coli
           NC101]
 gi|305850260|gb|EFM50719.1| general secretion pathway protein D precursor [Escherichia coli
           NC101]
          Length = 686

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGSVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|256024452|ref|ZP_05438317.1| general secretion pathway protein D precursor [Escherichia sp.
           4_1_40B]
          Length = 686

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|218701737|ref|YP_002409366.1| general secretion pathway protein D [Escherichia coli IAI39]
 gi|227887667|ref|ZP_04005472.1| type II secretion protein GspD [Escherichia coli 83972]
 gi|301019909|ref|ZP_07184044.1| general secretion pathway protein D [Escherichia coli MS 196-1]
 gi|218371723|emb|CAR19573.1| general secretion pathway protein D precursor [Escherichia coli
           IAI39]
 gi|227835063|gb|EEJ45529.1| type II secretion protein GspD [Escherichia coli 83972]
 gi|299882007|gb|EFI90218.1| general secretion pathway protein D [Escherichia coli MS 196-1]
 gi|307555055|gb|ADN47830.1| general secretion pathway protein GspD [Escherichia coli ABU 83972]
          Length = 686

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|222109918|ref|YP_002552182.1| type IV pilus secretin pilq [Acidovorax ebreus TPSY]
 gi|221729362|gb|ACM32182.1| type IV pilus secretin PilQ [Acidovorax ebreus TPSY]
          Length = 696

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 102/258 (39%), Gaps = 24/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------- 225
           ++++  L++    QV ++  I E R    + +G +      + G                
Sbjct: 436 RQLLATLDVP-VRQVMIEARIVEARDTFGRSLGVRLGGGSRTGGSAVGGTYDNVAGPTGG 494

Query: 226 ----PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
               P  S  A   G         S+            L A+E     + ++ P L    
Sbjct: 495 SGMSPFVSLPASLSGVSTVGSFALSIFNSNASRFLSLELSAMEADGQGKIVSSPRLITAD 554

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
              A    G ++ Y +V++  GAT++      + L  TP +   G I L +  +V++   
Sbjct: 555 QTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVTPQITPEGNIILDL--DVNKDSR 611

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G +     +   +   T V + +GGT+V+ G+ + +    +  IP+L  +P++G LF+N 
Sbjct: 612 GESTTQGVAIDTKHIKTQVLIENGGTVVIGGIFEMEETNQENKIPVLGDVPVVGNLFKNR 671

Query: 402 RFNREETEIFIAATPFLV 419
                + E+ +  TP ++
Sbjct: 672 TKESTKREMLVFITPKVI 689


>gi|238897480|ref|YP_002923157.1| putative protein exporter, transport across outer membrane (General
           Secretory Pathway) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465235|gb|ACQ67009.1| putative protein exporter, transport across outer membrane (General
           Secretory Pathway) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 687

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 70/334 (20%), Positives = 126/334 (37%), Gaps = 47/334 (14%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------- 222
             +Q    S + ++  L+I    QV ++  I EV        G Q     S         
Sbjct: 342 TASQDVMQSIRSIIEQLDIR-RAQVHVEALIVEVAEISDINFGVQWQANNSLIQFNNGHQ 400

Query: 223 ---------------SSGPSKSFAADFGGKFVSE---------GGDFSVKGVLDRFSFET 258
                           +G + +    F    VS           G    K  + +  ++ 
Sbjct: 401 IPLGALTLARRHAESKTGNTLNQNETFLPSQVSSDISLLSKLLSGFSGAKVGIIKGDWQA 460

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYG 313
           ++ A++  +++  L+ P++T +  Q ASF  G      T S     ++    +V     G
Sbjct: 461 LVQAVKNDSSVNVLSTPSITTLDNQEASFMVGEDVPVLTGSAANANNTNPFNTVERRKIG 520

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V+L  TP +     + L I+ EVS+ + G    D+  +  RK  TTV    G  IVL GL
Sbjct: 521 VMLKVTPQINEGNTVQLLIEQEVSK-IQGETKLDI-KFAERKLKTTVLADDGQLIVLGGL 578

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP------VAMRDL 427
           L ++  +    +P+L  IPILG LF+++   + +  + I   P +++       ++ R  
Sbjct: 579 LDEESGESVSKVPVLGDIPILGHLFKSTVNKKTKRNLMIFIRPTILRDGLSADGISQRKY 638

Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
                    ++        R  +   P +  E E
Sbjct: 639 HYMRAEQLYKNHPGLSLMPRTKQPLLPADGKESE 672


>gi|209520029|ref|ZP_03268806.1| type IV pilus secretin PilQ [Burkholderia sp. H160]
 gi|209499514|gb|EDZ99592.1| type IV pilus secretin PilQ [Burkholderia sp. H160]
          Length = 569

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 15/242 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGG-----------KF 238
               QV ++  I E      + +G + S+ G+S+ G SK  +    G            F
Sbjct: 329 RPTRQVLIEAQIVEGDHGFSRNLGVRLSLAGTSADGTSKGLSGGADGTVYDLSARPISGF 388

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++            L ALE     + ++ P +       A    G +  Y+  
Sbjct: 389 DAATAGLTLFAAHATRLLNIELSALESEGHGKIVSSPRVVTADRMKAIVEQGTELPYQ-A 447

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P ++  GR+ L +           +AG  P+   +   T
Sbjct: 448 KVGQGISGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGAQTDAG--PAINTKHVQT 505

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+  GGT+ + G+ +   +   E +P+L KIPILGALFR+   +   +E+ +  TP +
Sbjct: 506 RVEVEDGGTVSIGGIYETSDRDDVERVPILGKIPILGALFRDRTHSDTRSELAVFITPRV 565

Query: 419 VK 420
           V+
Sbjct: 566 VR 567


>gi|254429767|ref|ZP_05043474.1| general secretion pathway protein D [Alcanivorax sp. DG881]
 gi|196195936|gb|EDX90895.1| general secretion pathway protein D [Alcanivorax sp. DG881]
          Length = 694

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 128/329 (38%), Gaps = 34/329 (10%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L   L+ F   +++                  + S +A E     + ++  +    
Sbjct: 276 DAKTLAELLKNFADGASVTKAGGDSKTATAASSNNSKVSIQADESLNALVIRAEPSMM-- 333

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + V++ L++    Q+ ++  I E+  +  K +GFQ+    + SG     A +FGG  
Sbjct: 334 RELQSVISQLDVR-RAQILIEAAIVEISGEQGKNLGFQYVGGSNESGVG---AVNFGGGG 389

Query: 239 VS----------------EGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTL 277
           +S                  GD    G+          +  ++ AL  ++ +  L+ P++
Sbjct: 390 LSINSIVQALATDDPSGLSLGDGITAGLGETDSNGDLKWGALVQALSTSSDVNLLSTPSI 449

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGL 330
             +  + AS   G    + T  S+          T++   D G+ L  TP V     I L
Sbjct: 450 LTLDNEEASIVVGENVPFVTGQSTNTGSGVSNPFTTIQREDVGLTLKVTPHVAGLSTIRL 509

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ E S                RK  +TV      TI L GL+KDDI+     +PLL  
Sbjct: 510 ELEQENSAVKDSAGDAVDIVTTTRKLQSTVLADDAETIALGGLIKDDIRVTVRKVPLLGD 569

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP LG LFR++  +R ++ + +   P ++
Sbjct: 570 IPFLGFLFRSTSKDRVKSNLMVFLKPTIL 598


>gi|85704683|ref|ZP_01035785.1| general secretion pathway protein D [Roseovarius sp. 217]
 gi|85671091|gb|EAQ25950.1| general secretion pathway protein D [Roseovarius sp. 217]
          Length = 648

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 132/371 (35%), Gaps = 41/371 (11%)

Query: 102 IGHDGKQMLNLDILIE-RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           +    + +    + +   +   L   +R+         E  + T V  G+    ++ Q A
Sbjct: 240 LDRPQRSIATEVVHLNYANATDLADVIRQSFGAPEASTEGAAPTAVPGGITIVAEEQQNA 299

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-- 218
           + ++      +          ++          DQV ++  I E+  +    + FQ    
Sbjct: 300 LIITAPTDRIASITGAVRGLDQR---------PDQVLIEAVIFELSVESFSDLSFQFGGV 350

Query: 219 ITGSSSGP-----------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           I G++ G            +   +    G   + GG        D+      L AL   +
Sbjct: 351 IDGATVGGVEFALQGRPTLTSLVSTVLAGNAPTGGGTGGSIAAFDKSGIGGFLAALASKS 410

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHF 318
           + + L+ P++  ++ + A         + T S ST            ++   D G+ L  
Sbjct: 411 STKLLSTPSILTLNNREAEIVVAQNVPFVTGSFSTVGDSAVPNQPFQTIQRQDVGLTLTV 470

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           TP +     + L I  EVS      +A        R+  T V +  G  I+L GLL++  
Sbjct: 471 TPQITRDKTVRLEINQEVSNLTNAASAAGGEITSKRELSTNVLVRDGHVIMLGGLLENGS 530

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA---------MRDLSR 429
             + + +P LS++P+LG LF+    N  +  + +   P ++              R+  R
Sbjct: 531 GSVNQRVPGLSELPLLGRLFKGRSVNENQRILLVMLRPRILSSDEEARELTKRLAREAKR 590

Query: 430 PDDHYSVEDDA 440
             D+ +  DD 
Sbjct: 591 AADYIAPADDG 601


>gi|325498531|gb|EGC96390.1| type II secretion protein GspD [Escherichia fergusonii ECD227]
          Length = 686

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|188997001|ref|YP_001931252.1| type II and III secretion system protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932068|gb|ACD66698.1| type II and III secretion system protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 602

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 20/247 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKS------FAADFGG 236
             Q+ ++  I +V    LK +G Q   + ++           G S S      +A DF  
Sbjct: 354 PYQIAIEARIVQVSTSNLKDLGIQWGGSATNIDNNNTKIITGGGSTSVISGGRYAVDFPS 413

Query: 237 KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
              +  G F++  V        +  L AL+     + L++P +  I G++A  + G +  
Sbjct: 414 SSATFPGGFAIGFVFGGLQNFLDVRLSALQSIGRSKILSKPQIVTIDGETAEISQGYEVP 473

Query: 295 YKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
           Y T  ++ G T  SV+     + L+ TP   + G I + I      P         P  +
Sbjct: 474 YTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDIIITQDIPDFKNLILGNPPIQ 533

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +   + V    G  I + G+L+        G+P L  IPILG LF+ +    +  E+ I
Sbjct: 534 TKTVTSKVVAKDGSVIAIGGILEKTEDLKDSGVPGLMNIPILGYLFKENYKQEKTNELLI 593

Query: 413 AATPFLV 419
             +P +V
Sbjct: 594 FLSPRIV 600


>gi|54310534|ref|YP_131554.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum SS9]
 gi|46914977|emb|CAG21752.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum SS9]
          Length = 670

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 113/287 (39%), Gaps = 42/287 (14%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------------------- 219
           + + ++  L+I    QV ++  I E+        G Q+                      
Sbjct: 330 ALESIIAQLDIR-RAQVLIEAMIVELSEGDGINFGVQYGSADGGVIQFGNSNVPISQYAI 388

Query: 220 ---------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
                          +  ++  +++   DF       GG       +    +  +++A+ 
Sbjct: 389 GLQEAQDVPGSTVINSDGTTTINEATQGDFSTLASVLGGVNGAALGIVMGDWTMLVNAVA 448

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFT 319
             +    L+ P++T +    ASF  G +    T      S+     +V   + G+ L+ T
Sbjct: 449 TDSNSNILSSPSITVLDNSEASFIVGEEVPVVTGSTSSSSNDNPFQTVERKEVGIKLNVT 508

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + L+I+ EVS  +    A D+  +  R+ +TTV +  G  I L GL+ ++ +
Sbjct: 509 PQINEGDSVQLKIEQEVSSVLGASGAVDV-RFAKRQINTTVLVKDGQMIALGGLISEETK 567

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + +  IP+L  IP LG LF+++     +T + +   P +++     D
Sbjct: 568 ESESKIPILGDIPFLGFLFKSTNTTTAKTNLMVFIKPTIIRDGVTAD 614


>gi|319786312|ref|YP_004145787.1| type IV pilus secretin PilQ [Pseudoxanthomonas suwonensis 11-1]
 gi|317464824|gb|ADV26556.1| type IV pilus secretin PilQ [Pseudoxanthomonas suwonensis 11-1]
          Length = 619

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 105/266 (39%), Gaps = 28/266 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
           ++++ +++    DQV ++  I        + +G +  I G  SG + +       +  S 
Sbjct: 350 RELIGVID-RPVDQVLIESRIVIASDSFARDLGARFGIQGRRSGNNTAAIGGSLNQTGSI 408

Query: 241 --------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                                 G  +   +   F+ +  L AL++      L+ P +   
Sbjct: 409 VNGGVGVPGGLNVNLPATAENAGALAYTLLGANFALDLELSALQQEGRGEVLSNPRVVTS 468

Query: 281 SGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           + + A    G +  Y T++          +V   +  + L  TPT+ S  R+ + +    
Sbjct: 469 NQREAVIRQGREVGYVTLTGGGNQAFATPNVQFKEVVLELKVTPTITSDDRVFMAVNVLK 528

Query: 337 SEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            E +  I  + G +P    R+ +T V +  G T+V+ G+ +         +P L  +P L
Sbjct: 529 DEVLQYIDTSIGQVPEIATREINTAVLVDDGQTVVIGGVYEFTDSNSVSKVPFLGDVPFL 588

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G LF+     +E+ E+ I  TP +++
Sbjct: 589 GNLFKKKSRLKEKAELLIFLTPKVMR 614


>gi|315288713|gb|EFU48111.1| general secretion pathway protein D [Escherichia coli MS 110-3]
          Length = 681

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 607

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627


>gi|153003562|ref|YP_001377887.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. Fw109-5]
 gi|152027135|gb|ABS24903.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. Fw109-5]
          Length = 893

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 124/330 (37%), Gaps = 41/330 (12%)

Query: 128 RRFIADSNIRVEMVSDTVV----LHGMVRTIQDSQRAVELSETFLSQSGRN-QYANSSSK 182
           +  I    ++V ++         + G V+ +   + +V   E       ++ Q A   ++
Sbjct: 556 KARIPLMPLKVRIIPVNFARAGDVSGRVKDVLSERGSVSTDERTNVLIVKDVQEALVRAE 615

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---------- 232
            ++  L+     QV ++  I E   +  K +G Q     S +  + +             
Sbjct: 616 GLVRNLDTEIP-QVLIESRIVEASSNFNKALGVQWGGNASFTQATGNPTGVAFPNNVAAA 674

Query: 233 ---------------DFGGKFVSEGGD-------FSVKGVLDRFSFETVLHALERATAIR 270
                          ++     +  GD                F+    L ALE    ++
Sbjct: 675 GGAGPGNSFGTAANPNYAVSLPAPVGDGQGGALGLVFGSAGGAFNLNLRLSALENNGVVK 734

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           T++ P +  I  + A+   G    +  VS+S    + T  +  + L  TP V + G I L
Sbjct: 735 TISAPKIATIDNREATIGQGISIPFSQVSAS--GVNTTFIEAKLELKVTPHVSADGSILL 792

Query: 331 RIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +I+   ++P      A   PS   R+A+T V +  G T V+ G+           +P L 
Sbjct: 793 KIKATNNQPNPQLTGANGQPSISKREAETEVLVKDGETTVIGGIYTRQTANRTSEVPFLG 852

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
           K+P+LG  FRN     + TE+ I  TP ++
Sbjct: 853 KLPLLGYFFRNMSEQDDHTELLIFITPRIL 882


>gi|323966493|gb|EGB61926.1| general secretion pathway protein D [Escherichia coli M863]
 gi|327251745|gb|EGE63431.1| general secretion pathway protein D [Escherichia coli STEC_7v]
          Length = 686

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|301326853|ref|ZP_07220153.1| general secretion pathway protein D [Escherichia coli MS 78-1]
 gi|300846528|gb|EFK74288.1| general secretion pathway protein D [Escherichia coli MS 78-1]
          Length = 686

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|11559475|dbj|BAB18788.1| GspD [Burkholderia cepacia]
          Length = 783

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 122/350 (34%), Gaps = 58/350 (16%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G         +A   + + +  +    Y N   + V++ L+ A   QV ++  I E+  
Sbjct: 367 SGDDNQPGGMIQADSATNSLIITASDPVYRN--LRSVIDQLD-ARRAQVYIEALIVELNS 423

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKF------VSEGGDFSVKGVLDRFSFETVLH 261
                +G Q  +         + A   G         ++ GG  +  G +      + L 
Sbjct: 424 TTQGNLGIQWQVASGQFLGGTNLAPTAGNGLGNSIINLTAGGLTNAAGGITGGGLASNLG 483

Query: 262 ALERA-------------------------TAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
            L +                          +    L+ P L  +  + A    G      
Sbjct: 484 QLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIA 543

Query: 297 TVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347
           T S S   +  T          D G+ LH  P +   G + L++ TE S  V G  N+  
Sbjct: 544 TGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVNGTTNSQT 603

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P++  R   +T+   +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R +
Sbjct: 604 GPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAK 663

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           T + +   P ++               S    A+    NR + I G   A
Sbjct: 664 TNLMVFLRPVII---------------SDRSTAQEVTSNRYDYIQGVTGA 698


>gi|110643200|ref|YP_670930.1| type II secretion protein GspD [Escherichia coli 536]
 gi|194436907|ref|ZP_03069007.1| general secretion pathway protein GspD [Escherichia coli 101-1]
 gi|218550223|ref|YP_002384014.1| general secretion pathway protein D [Escherichia fergusonii ATCC
           35469]
 gi|218555536|ref|YP_002388449.1| general secretion pathway protein D [Escherichia coli IAI1]
 gi|218696673|ref|YP_002404340.1| general secretion pathway protein D precursor [Escherichia coli
           55989]
 gi|254162916|ref|YP_003046024.1| type II secretion protein GspD [Escherichia coli B str. REL606]
 gi|291284343|ref|YP_003501161.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
           CB9615]
 gi|300931844|ref|ZP_07147141.1| general secretion pathway protein D [Escherichia coli MS 187-1]
 gi|300950837|ref|ZP_07164722.1| general secretion pathway protein D [Escherichia coli MS 116-1]
 gi|300958340|ref|ZP_07170482.1| general secretion pathway protein D [Escherichia coli MS 175-1]
 gi|110344792|gb|ABG71029.1| hypothetical type II secretion protein GspD [Escherichia coli 536]
 gi|194424389|gb|EDX40376.1| general secretion pathway protein GspD [Escherichia coli 101-1]
 gi|218353405|emb|CAU99456.1| general secretion pathway protein D precursor [Escherichia coli
           55989]
 gi|218357764|emb|CAQ90408.1| general secretion pathway protein D precursor [Escherichia
           fergusonii ATCC 35469]
 gi|218362304|emb|CAQ99925.1| general secretion pathway protein D precursor [Escherichia coli
           IAI1]
 gi|242378520|emb|CAQ33305.1| pulD [Escherichia coli BL21(DE3)]
 gi|253974817|gb|ACT40488.1| GspD, hypothetical type II secretion protein [Escherichia coli B
           str. REL606]
 gi|253978972|gb|ACT44642.1| GspD, hypothetical type II secretion protein [Escherichia coli
           BL21(DE3)]
 gi|284922988|emb|CBG36080.1| type II secretion system protein D [Escherichia coli 042]
 gi|290764216|gb|ADD58177.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
           CB9615]
 gi|300314983|gb|EFJ64767.1| general secretion pathway protein D [Escherichia coli MS 175-1]
 gi|300449873|gb|EFK13493.1| general secretion pathway protein D [Escherichia coli MS 116-1]
 gi|300460267|gb|EFK23760.1| general secretion pathway protein D [Escherichia coli MS 187-1]
 gi|320656346|gb|EFX24253.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320666867|gb|EFX33843.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
           LSU-61]
 gi|324114991|gb|EGC08956.1| general secretion pathway protein D [Escherichia fergusonii B253]
 gi|332344919|gb|AEE58253.1| general secretion pathway protein GspD [Escherichia coli UMNK88]
          Length = 686

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|320661717|gb|EFX29125.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 686

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|254184073|ref|ZP_04890664.1| general secretion pathway protein D [Burkholderia pseudomallei
           1655]
 gi|184214605|gb|EDU11648.1| general secretion pathway protein D [Burkholderia pseudomallei
           1655]
          Length = 751

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 116/306 (37%), Gaps = 46/306 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFV 239
           + V++ L+ A   QV ++  + E+       +G Q  +  ++  +G + +     GG  +
Sbjct: 394 RAVIDQLD-ARRAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLTTGGVGGGNSI 452

Query: 240 ---SEGGDFSVKGVLDRFS----------------FETVLHALERATAIRTLAEPTLTAI 280
              +     S  G +   S                   +L      +    L+ P L  +
Sbjct: 453 VDLTTRAATSAVGAISTISPGLNIGWLHNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTL 512

Query: 281 SGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
             + A    G      T S        ++    +    D G+ LH  P +   G + L++
Sbjct: 513 DNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQL 572

Query: 333 QTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            TE S  V   +N    P++  R   +TV   +G  IVL GL++D+ Q     +PLL  I
Sbjct: 573 YTEDSSVVNTTINNQSGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVANNKVPLLGDI 632

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P +G LFR+    R++T + +   P ++                  + A+A   NR + I
Sbjct: 633 PWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTSNRYDYI 677

Query: 452 YGPKEA 457
            G   A
Sbjct: 678 QGVTGA 683


>gi|21244259|ref|NP_643841.1| general secretion pathway protein D [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109904|gb|AAM38377.1| general secretion pathway protein D [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 763

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 81/327 (24%), Positives = 129/327 (39%), Gaps = 44/327 (13%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            +  + +E+  D V +            AV  + T L +S    +  SS + V+  L++ 
Sbjct: 433 GNGAVTLEVAGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 479

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSI---------TGSSSGPSKSFAA--DFGGKFVS 240
              QV ++  +AEV        G                 S GP+   AA  +  G    
Sbjct: 480 -PMQVHIEAQVAEVNLTGALSYGVNWYFENAVTTPFNADGSGGPALPSAAGRNIWGDIAG 538

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              D  V       +   ++ AL+  + +R L  P++   +   A+   G +    + S 
Sbjct: 539 RVTDGGVAWTFLGKNAAAIISALDTVSNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSI 598

Query: 301 STG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------- 347
           +TG       +SV   D GV+L   P V   G + L I  E+S P     A         
Sbjct: 599 NTGLGSDSSYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEISTPGARPAACTAATTTTV 658

Query: 348 -----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                      R+  T   + SG T++LAGL+ D       G+P LSK+PI+GALF    
Sbjct: 659 NSAACNVDINTRRVKTEAAVQSGDTMMLAGLIDDSTTNGSVGVPFLSKLPIVGALFGRKT 718

Query: 403 FNREETEIFIAATPFLVK-PVAMRDLS 428
            N +  E+ +  TP +V+ P   RDL+
Sbjct: 719 QNTDRREVIVLITPSIVRNPKESRDLT 745


>gi|240949528|ref|ZP_04753868.1| type II secretory pathway, component HofQ [Actinobacillus minor
           NM305]
 gi|240296101|gb|EER46762.1| type II secretory pathway, component HofQ [Actinobacillus minor
           NM305]
          Length = 443

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 108/285 (37%), Gaps = 21/285 (7%)

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGE-----DQVTLKVTIAEVRRDILKQIGFQHS-- 218
               +   +     +   + N++++  E     +Q+ ++  I  +  + L ++G +    
Sbjct: 150 IHFDERSNSLIIKDNPSSIKNMISLIKELDKPTEQIAIEARIVTISSENLHELGVRWGML 209

Query: 219 --------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--LDRFSFETVLHALERATA 268
                   + G+  G       +    F   GG  +V  V  ++    +  L ALE+  +
Sbjct: 210 SPNASHSRLGGTLEGNGVDSTKNLNVNFPVSGGASAVLQVASINSKVLDLELSALEQENS 269

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           +  +A P L   + + AS   G +  Y      +    V   +  + L  TP +    +I
Sbjct: 270 VEIIASPRLLTTNKKLASIKQGTEIPYAIYDRKSETYDVEFKEAVLGLQVTPHISKDNQI 329

Query: 329 GLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            + +    +      V   +     S   ++ +T V    G TIVL G+ +    +  + 
Sbjct: 330 LMDLVVTQNSQGQSVVSSTSDNAAVSIDKQELNTQVFAKHGETIVLGGIFQHLKTKDSDR 389

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           +P+L  IP L  LF   +    + E+ I  TP++++   +    +
Sbjct: 390 VPVLGSIPFLKHLFSYQKDQISKRELVIFVTPYIIQANDINAQPQ 434


>gi|299529584|ref|ZP_07043021.1| general secretion pathway protein D [Comamonas testosteroni S44]
 gi|298722447|gb|EFI63367.1| general secretion pathway protein D [Comamonas testosteroni S44]
          Length = 750

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 112/294 (38%), Gaps = 43/294 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------------ITG 221
           + V++ L+     QV ++  I EV  D   Q+G Q S                       
Sbjct: 377 RTVIDKLD-GRRAQVLIEALIVEVSADKAAQLGVQWSSVIRNNGRVLGVLGNGTSISGIS 435

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKG-----------VLDRFSFETVLHALERATAIR 270
           +  G S +      G  +++    ++ G           V    S   +++ ++      
Sbjct: 436 NIFGLSGAVGNLVNGTPLTDSQASAIGGMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTN 495

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPT 321
            L+ P L  +  + AS   G    + T S +  A         T+    D G +L   P 
Sbjct: 496 ILSTPNLMTLDNEEASIMVGENVPFPTGSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQ 555

Query: 322 VLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +   G I + +  E S    G  NA    +   R  ++ V +  G  +VL GL+ D+  Q
Sbjct: 556 INENGTIKMAVYQENSAVKQGTANAQSGATTTKRSIESNVLVEDGAIVVLGGLIADEYSQ 615

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            +E +PLL  IP+LG LFRN+   R++T + +   P +++           D Y
Sbjct: 616 SQERVPLLGDIPLLGNLFRNTSRERKKTNLMVFLRPTVLRDANSTS-QLSQDRY 668


>gi|167717371|ref|ZP_02400607.1| general secretion pathway protein D [Burkholderia pseudomallei
           DM98]
          Length = 730

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 116/306 (37%), Gaps = 46/306 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFV 239
           + V++ L+ A   QV ++  + E+       +G Q  +  ++  +G + +     GG  +
Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLTTGGVGGGNSI 445

Query: 240 ---SEGGDFSVKGVLDRFS----------------FETVLHALERATAIRTLAEPTLTAI 280
              +     S  G +   S                   +L      +    L+ P L  +
Sbjct: 446 VDLTTRAATSAVGAISTISPGLNIGWLHNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTL 505

Query: 281 SGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
             + A    G      T S        ++    +    D G+ LH  P +   G + L++
Sbjct: 506 DNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQL 565

Query: 333 QTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            TE S  V   +N    P++  R   +TV   +G  IVL GL++D+ Q     +PLL  I
Sbjct: 566 YTEDSSVVNTTINNQSGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVANNKVPLLGDI 625

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P +G LFR+    R++T + +   P ++                  + A+A   NR + I
Sbjct: 626 PWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTSNRYDYI 670

Query: 452 YGPKEA 457
            G   A
Sbjct: 671 QGVTGA 676


>gi|221069059|ref|ZP_03545164.1| type IV pilus secretin PilQ [Comamonas testosteroni KF-1]
 gi|220714082|gb|EED69450.1| type IV pilus secretin PilQ [Comamonas testosteroni KF-1]
          Length = 703

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 99/249 (39%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQH-------------------SITGSSS----GPSKSF 230
            QV ++  I E R    + +G +                    S +GSSS    G   + 
Sbjct: 450 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSGSGSSSKFPSGNFVNL 509

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A   G        FSV            L ALE     + ++ P L       A    G
Sbjct: 510 PASVAGVNTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 569

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            ++ Y +V++  GAT+++     + L  TP +   G I L +  +V++   G       +
Sbjct: 570 TEYPY-SVTAPNGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 626

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+ + +       +PL   +P+LG LFR++     + E+
Sbjct: 627 IDTKHIKTQVLVENGGTVVIGGIFEMEETNQLNKVPLFGDLPVLGHLFRSNTKASTKREM 686

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 687 LVFITPKML 695


>gi|222034685|emb|CAP77427.1| hypothetical type II secretion proteinGspD [Escherichia coli LF82]
          Length = 679

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 368 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 427

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625


>gi|157157281|ref|YP_001464424.1| general secretion pathway protein D [Escherichia coli E24377A]
 gi|188495193|ref|ZP_03002463.1| general secretion pathway protein D [Escherichia coli 53638]
 gi|191169103|ref|ZP_03030864.1| general secretion pathway protein GspD [Escherichia coli B7A]
 gi|193062082|ref|ZP_03043178.1| general secretion pathway protein GspD [Escherichia coli E22]
 gi|260869724|ref|YP_003236126.1| putative type II secretion protein GspD [Escherichia coli O111:H-
           str. 11128]
 gi|300824048|ref|ZP_07104169.1| general secretion pathway protein D [Escherichia coli MS 119-7]
 gi|300905916|ref|ZP_07123648.1| general secretion pathway protein D [Escherichia coli MS 84-1]
 gi|301304138|ref|ZP_07210254.1| general secretion pathway protein D [Escherichia coli MS 124-1]
 gi|307310403|ref|ZP_07590051.1| general secretion pathway protein D [Escherichia coli W]
 gi|309794068|ref|ZP_07688493.1| general secretion pathway protein D [Escherichia coli MS 145-7]
 gi|331669777|ref|ZP_08370622.1| general secretion pathway protein D [Escherichia coli TA271]
 gi|331679035|ref|ZP_08379707.1| general secretion pathway protein D [Escherichia coli H591]
 gi|157079311|gb|ABV19019.1| general secretion pathway protein D [Escherichia coli E24377A]
 gi|188490392|gb|EDU65495.1| general secretion pathway protein D [Escherichia coli 53638]
 gi|190900855|gb|EDV60643.1| general secretion pathway protein GspD [Escherichia coli B7A]
 gi|192932302|gb|EDV84900.1| general secretion pathway protein GspD [Escherichia coli E22]
 gi|257766080|dbj|BAI37575.1| predicted type II secretion protein GspD [Escherichia coli O111:H-
           str. 11128]
 gi|300402269|gb|EFJ85807.1| general secretion pathway protein D [Escherichia coli MS 84-1]
 gi|300523438|gb|EFK44507.1| general secretion pathway protein D [Escherichia coli MS 119-7]
 gi|300840551|gb|EFK68311.1| general secretion pathway protein D [Escherichia coli MS 124-1]
 gi|306909298|gb|EFN39793.1| general secretion pathway protein D [Escherichia coli W]
 gi|308122475|gb|EFO59737.1| general secretion pathway protein D [Escherichia coli MS 145-7]
 gi|309703398|emb|CBJ02737.1| type II secretion system protein D [Escherichia coli ETEC H10407]
 gi|315062282|gb|ADT76609.1| type II secretion system lipoprotein D [Escherichia coli W]
 gi|315253339|gb|EFU33307.1| general secretion pathway protein D [Escherichia coli MS 85-1]
 gi|323178670|gb|EFZ64246.1| general secretion pathway protein D [Escherichia coli 1180]
 gi|323377134|gb|ADX49402.1| general secretion pathway protein D [Escherichia coli KO11]
 gi|331062690|gb|EGI34604.1| general secretion pathway protein D [Escherichia coli TA271]
 gi|331073100|gb|EGI44423.1| general secretion pathway protein D [Escherichia coli H591]
          Length = 686

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|121593158|ref|YP_985054.1| type IV pilus secretin PilQ [Acidovorax sp. JS42]
 gi|120605238|gb|ABM40978.1| type IV pilus secretin PilQ [Acidovorax sp. JS42]
          Length = 696

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 101/258 (39%), Gaps = 24/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------- 225
           ++++  L++    QV ++  I E R    + +G +      + G                
Sbjct: 436 RQLLATLDVP-VRQVMIEARIVEARDTFGRSLGVRLGGGSRTGGSAVGGTYDNVAGPTGG 494

Query: 226 ----PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
               P  S  A   G         S+            L A+E     + ++ P L    
Sbjct: 495 SGMSPFVSLPASLSGVSTVGSFALSIFNSNASRFLSLELSAMEADGQGKIVSSPRLITAD 554

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
              A    G ++ Y +V++  GAT++      + L  TP +   G I L +  +V++   
Sbjct: 555 QTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVTPQITPEGNIILDL--DVNKDSR 611

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G       +   +   T V + +GGT+V+ G+ + +    +  IP+L  +P++G LF+N 
Sbjct: 612 GETTTQGVAIDTKHVKTQVLIENGGTVVIGGIFEMEETNQENKIPVLGDVPVVGNLFKNR 671

Query: 402 RFNREETEIFIAATPFLV 419
                + E+ +  TP ++
Sbjct: 672 TKESTKREMLVFITPKVI 689


>gi|300993062|ref|ZP_07180170.1| general secretion pathway protein D [Escherichia coli MS 200-1]
 gi|301048227|ref|ZP_07195262.1| general secretion pathway protein D [Escherichia coli MS 185-1]
 gi|300299921|gb|EFJ56306.1| general secretion pathway protein D [Escherichia coli MS 185-1]
 gi|300305186|gb|EFJ59706.1| general secretion pathway protein D [Escherichia coli MS 200-1]
 gi|324005480|gb|EGB74699.1| general secretion pathway protein D [Escherichia coli MS 57-2]
 gi|324011870|gb|EGB81089.1| general secretion pathway protein D [Escherichia coli MS 60-1]
          Length = 681

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627


>gi|315297663|gb|EFU56940.1| general secretion pathway protein D [Escherichia coli MS 16-3]
          Length = 681

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627


>gi|241763436|ref|ZP_04761490.1| general secretion pathway protein D [Acidovorax delafieldii 2AN]
 gi|241367378|gb|EER61699.1| general secretion pathway protein D [Acidovorax delafieldii 2AN]
          Length = 697

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 118/286 (41%), Gaps = 10/286 (3%)

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
           +  V   G+V       R +   +         +      +  +  L++    QV ++ +
Sbjct: 370 NQGVATGGVVAANLGGVRVMADEQNNSILVWSTRSDFQKIENTLKRLDLP-PTQVLIEAS 428

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           I EV      + G Q + + +  G   S     G    +  G FS        +    L+
Sbjct: 429 IIEVTLGDDLKYGLQWAFSDTHRGGPGS--GLIGALPSASTGGFSYTLKDTLGNMRVTLN 486

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGV 314
           AL   + I+ ++ P+L  +  Q+A+   G Q   +T  ++          T+    D GV
Sbjct: 487 ALAAKSLIKVISSPSLMVLDNQTATIAVGTQQPIRTGETTNLNTVGNSTTTTYQYKDTGV 546

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L   P+V S   + + I   V++           ++  R+  + V + SG  +VL GL+
Sbjct: 547 QLSVQPSVNSGDLVTMDISQAVTDVGDEDTVTGQRAFLQRQISSKVAVRSGEAVVLGGLI 606

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           KD+    + G+PLLS +P++G LF  +  +   TE+ +  TP +V+
Sbjct: 607 KDNSSSGRSGVPLLSSLPVVGGLFGATTSSSGRTELLVVITPKVVR 652


>gi|209920436|ref|YP_002294520.1| putative type II secretion protein [Escherichia coli SE11]
 gi|256019113|ref|ZP_05432978.1| putative type II secretion protein [Shigella sp. D9]
 gi|332280218|ref|ZP_08392631.1| general secretion pathway protein D [Shigella sp. D9]
 gi|209913695|dbj|BAG78769.1| putative type II secretion protein [Escherichia coli SE11]
 gi|320201874|gb|EFW76449.1| General secretion pathway protein D [Escherichia coli EC4100B]
 gi|332102570|gb|EGJ05916.1| general secretion pathway protein D [Shigella sp. D9]
          Length = 686

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|167045577|gb|ABZ10227.1| putative bacterial type II and III secretion system protein
           [uncultured marine crenarchaeote HF4000_APKG10I20]
          Length = 648

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 69/336 (20%), Positives = 136/336 (40%), Gaps = 46/336 (13%)

Query: 104 HDGKQMLNLDILIER-DIAHLEM---TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            D + ++   + +   DI  L      L+    D+ I ++  ++T++L+           
Sbjct: 338 RDSEDLVTEVVRVNHADITELSTSLNALKSARKDALITIDTRTNTLILN------DLRHH 391

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
             ++ ET                  + +L+I+   QV ++  I E+ +   +++G    +
Sbjct: 392 VDDMLET------------------IKILDISTP-QVLIEAKIVEISKTFSQELGISWGL 432

Query: 220 TGSSSG-PSKSFAADFGGKFVS-------------EGGDFSVKGVL-DRFSFETVLHALE 264
                G P+ +  + F  +F+               G D  ++G L    +    L ALE
Sbjct: 433 VNPEPGFPTVTGNSTFDTQFLVDLRPTVDIATGNVAGFDSLIQGFLPGNIALNVRLEALE 492

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           ++   R ++ P +T    + A   SG    Y+   +S    S+   +  + L  TP V S
Sbjct: 493 KSGKGRVISSPRVTTADNKEARVLSGRDIPYQV--NSVEGNSIQFVNAELSLTVTPHVTS 550

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              I + I    +       A  +P+   ++  T V + +G T VLAG+ +    + K+ 
Sbjct: 551 DNSIYMTIDATKNAADFAQLAAGIPTITRKEMHTEVLVGNGETTVLAGIYESTSTENKKA 610

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P  SK+P++G LFR         E+ +  TP +V+
Sbjct: 611 VPWFSKLPLVGFLFRAFDDKDTINELLVFITPTIVE 646


>gi|148269971|ref|YP_001244431.1| type II and III secretion system protein [Thermotoga petrophila
            RKU-1]
 gi|147735515|gb|ABQ46855.1| type II and III secretion system protein [Thermotoga petrophila
            RKU-1]
          Length = 1282

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 138/345 (40%), Gaps = 35/345 (10%)

Query: 79   VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL-IERDIAHLEMTLRRFIADSNIR 137
            V + S    YLF    G   V ++    + +    +  +  +   ++  +  +     + 
Sbjct: 971  VDLISQNYGYLFDNKSG---VYVLSKPKQDLARRYVYDVPHNFDQIKALIEFY--GGTVY 1025

Query: 138  VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
            V+ +++ +V+ G+  TI                             ++  L    + Q+ 
Sbjct: 1026 VDSLNNFMVVTGISETI-----------------------KKELDNIIEKLKKPTK-QIE 1061

Query: 198  LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSF 256
            +   I  V R ++ ++  +  +  +    +   +       V++  DF  + G +   + 
Sbjct: 1062 ISAKI--VDRSLIDRLSKEAGLELTGGNVNVGSSGAGISFSVTDYLDFEKIFGGILNSNL 1119

Query: 257  ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
                   +  T    LA P +   SG+ A    G +  Y T ++  G   V   + G+ L
Sbjct: 1120 SLQFSDQKTNTLDDILASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIEL 1179

Query: 317  HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            + TP V S   I L +  + SEP   +N  ++P  R R+  T + + +G TI + GL+++
Sbjct: 1180 NITPFVRSDDTIELDLFVKASEPGNYIN--EVPGERTRETQTHLIVKNGSTITIGGLIRE 1237

Query: 377  DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                 +  +P L  +P++G  FR    N+E+ ++ I  T  +V+P
Sbjct: 1238 VTNVTESKLPFLGDLPVIGQFFRTKSENKEKRDLIIFLTVRVVEP 1282


>gi|326423839|ref|NP_760349.2| pilus (MSHA type) biogenesis protein MshL [Vibrio vulnificus CMCP6]
 gi|319999208|gb|AAO09876.2| pilus (MSHA type) biogenesis protein MshL [Vibrio vulnificus CMCP6]
          Length = 548

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 70/280 (25%), Positives = 110/280 (39%), Gaps = 29/280 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ + +     + QV L+  I EV      Q G   S   +S G S S   +  G  V  
Sbjct: 259 RQFLGISQERMQRQVILEAKILEVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLP 318

Query: 242 GGD-------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           G D             +   SFE VL  +     +  L+ P +TA + Q A    G    
Sbjct: 319 GLDAIGSLLGGQTNVTISDGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQY 378

Query: 295 YKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341
           Y T  SS              ++T    G+ L  TP +   G + L +     EV E   
Sbjct: 379 YVTALSSNVGNDDKSKAVPEVTLTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETK 438

Query: 342 GVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            +N G         +    +R++D+ +    G  +V+ GL+K +  +    +P L  IP 
Sbjct: 439 QLNLGGDFQNVTLPLAKSSIRESDSVIRARDGDVVVIGGLMKSNTIERVSKVPFLGDIPA 498

Query: 394 LGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
           LG LFRN+    ++TE+ I   P +V      ++L R  D
Sbjct: 499 LGHLFRNTSNLTQKTELVILLKPTVVGVNTWQKELERSRD 538


>gi|167582884|ref|ZP_02375758.1| general secretion pathway protein D [Burkholderia thailandensis
           TXDOH]
          Length = 744

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 114/306 (37%), Gaps = 46/306 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           + V++ L+ A   QV ++  + E+       +G Q  +  ++     +            
Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLPTGGVGGGNSI 445

Query: 231 -------AADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAI 280
                  A    G   +     ++  + + F       +L      +    L+ P L  +
Sbjct: 446 VDLTTRAATSAVGAISTLTPGLNIGWLHNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTL 505

Query: 281 SGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
             + A    G      T S        ++    +    D G+ LH  P +   G + L++
Sbjct: 506 DNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQL 565

Query: 333 QTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            TE S  V   VN    P++  R   +TV   +G  IVL GL++D+ Q     +PLL  I
Sbjct: 566 YTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDI 625

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P +G LFR+    R++T + +   P ++            D     + A+A   NR + I
Sbjct: 626 PWIGQLFRSEGKTRQKTNLMVFLRPVII-----------TDR----ETAQAVTSNRYDYI 670

Query: 452 YGPKEA 457
            G   A
Sbjct: 671 QGVTGA 676


>gi|193067486|ref|ZP_03048454.1| general secretion pathway protein GspD [Escherichia coli E110019]
 gi|192959443|gb|EDV89878.1| general secretion pathway protein GspD [Escherichia coli E110019]
          Length = 686

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|157162438|ref|YP_001459756.1| general secretion pathway protein D [Escherichia coli HS]
 gi|157068118|gb|ABV07373.1| general secretion pathway protein D [Escherichia coli HS]
          Length = 686

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|317407154|gb|EFV87149.1| general secretion pathway protein D [Achromobacter xylosoxidans
           C54]
          Length = 870

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 71/317 (22%), Positives = 119/317 (37%), Gaps = 37/317 (11%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGG 236
           S ++V++ L+     QV ++  I EV      + G Q    +   +S G S     + GG
Sbjct: 413 SLREVIDQLDQR-RAQVLVESLIVEVSEQAAAEFGIQWMTGAGNINSGGTSFIGGTNLGG 471

Query: 237 KFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTA 279
             ++  G  S+  +                     +   +  A++       L+ P L  
Sbjct: 472 SGLTGTGPTSIDALGSGLSLGVVKGTVDVLGNKVINLGVLARAMQNTGEANILSTPNLLT 531

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           +  QSAS   G    + T    T          ++   D G+ L+  P +   G + L I
Sbjct: 532 LDNQSASILVGKTVPFVTGQYVTNGGNNNNPFQTIQREDVGLKLNIRPQISEGGAVKLDI 591

Query: 333 QTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
             EVS       +A        R  DT+V +  G  IVL GLL+D++      +P LS I
Sbjct: 592 YQEVSSIDESRSSATTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLTSNNVPGLSSI 651

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA-------FF 444
           P+LG+LF+     R +T + +   P++V+  A +  S   D Y     A+        + 
Sbjct: 652 PVLGSLFKYDSRKRTKTNLMVFLRPYVVRD-ARQSASVTMDRYDYMRRAQGGAQPGNHWL 710

Query: 445 FNRVNKIYGPKEASEVE 461
              +     P   S   
Sbjct: 711 LPNMQAPMLPPPGSAPS 727


>gi|116751076|ref|YP_847763.1| general secretion pathway protein D [Syntrophobacter fumaroxidans
           MPOB]
 gi|116700140|gb|ABK19328.1| general secretion pathway protein D [Syntrophobacter fumaroxidans
           MPOB]
          Length = 793

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 121/289 (41%), Gaps = 24/289 (8%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           + +      E++   + ++    YA    KK +  L+I     V ++V IAEV      +
Sbjct: 483 SPEVMIIPDEVNNAIVVRANATDYAK--IKKTIEALDIL-PRAVLIEVIIAEVALTKDFE 539

Query: 213 IGFQHSITGSSSGPSKSFAA--DFGG--------KFVSEGGDFSVKGVLDRFSFETVLHA 262
            G +   + +  G      +    GG          +S  G  ++  V +      VL  
Sbjct: 540 YGLKWYFSHAEVGAGVGQGSLNGLGGVSDIALNLAGISSAGGMALAWVSNAKDMAGVLSW 599

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--------VTTHDYGV 314
           L   T ++ L+ PTL A   + A+   GG+    + S + G ++        +   + G 
Sbjct: 600 LSSKTKVKILSTPTLLATDNKEAAIQVGGRTPVPSGSYTGGTSTTLDTVFSTIEYEETGT 659

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLA 371
           +L  TP + + G + L ++  +         G     P++  R   TT+    G T+V+ 
Sbjct: 660 ILTVTPHINAGGLVRLEVEQTIRRVGANATVGVNNTAPTFTERNLKTTLLAQDGSTVVIG 719

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G++ +  +    G P+L  +PI+G LF     +RE TE+ IA TP +V+
Sbjct: 720 GIIDEIDRDTTTGAPMLVDVPIIGPLFGQKGKSRERTELLIAITPRVVE 768


>gi|83720377|ref|YP_440567.1| general secretion pathway protein D [Burkholderia thailandensis
           E264]
 gi|167621024|ref|ZP_02389655.1| general secretion pathway protein D [Burkholderia thailandensis
           Bt4]
 gi|83654202|gb|ABC38265.1| general secretion pathway protein D [Burkholderia thailandensis
           E264]
          Length = 744

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 114/306 (37%), Gaps = 46/306 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           + V++ L+ A   QV ++  + E+       +G Q  +  ++     +            
Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLPTGGVGGGNSI 445

Query: 231 -------AADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAI 280
                  A    G   +     ++  + + F       +L      +    L+ P L  +
Sbjct: 446 VDLTTRAATSAVGAISTLTPGLNIGWLHNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTL 505

Query: 281 SGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
             + A    G      T S        ++    +    D G+ LH  P +   G + L++
Sbjct: 506 DNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQL 565

Query: 333 QTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            TE S  V   VN    P++  R   +TV   +G  IVL GL++D+ Q     +PLL  I
Sbjct: 566 YTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDI 625

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P +G LFR+    R++T + +   P ++            D     + A+A   NR + I
Sbjct: 626 PWIGQLFRSEGKTRQKTNLMVFLRPVII-----------TDR----ETAQAVTSNRYDYI 670

Query: 452 YGPKEA 457
            G   A
Sbjct: 671 QGVTGA 676


>gi|325924171|ref|ZP_08185732.1| General secretion pathway protein D [Xanthomonas gardneri ATCC
           19865]
 gi|325545346|gb|EGD16639.1| General secretion pathway protein D [Xanthomonas gardneri ATCC
           19865]
          Length = 758

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 137/326 (42%), Gaps = 44/326 (13%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
           ++++ +E+  D V +            AV  + T L ++    +  SS + V+  L++  
Sbjct: 431 NASVTLEVEGDKVGVS-----------AVAETNTLLVRASAQAW--SSIRDVIEKLDVM- 476

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GD 244
             QV ++  IAEV      + G       + + P  +  +   G   + G        G 
Sbjct: 477 PMQVHIEAQIAEVTLTGQLEYGVNWYFENAVNAPINADGSGGAGLAPAVGRGIWGDVSGS 536

Query: 245 FSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            +  G+   F   +   ++ AL+R T +R L  P++   +   A+   G +    + S +
Sbjct: 537 VTNNGLAWTFLGKNAAAIISALDRVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSIN 596

Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------- 347
           TG       +SV   D GV+L   P V   G + L I  EVS P     A          
Sbjct: 597 TGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTTVN 656

Query: 348 ----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                     R+  T   + +G TI+LAGL+ D      +G+P LSK+P++G+LF     
Sbjct: 657 SAACNVDINTRRVKTEAAVQNGDTIMLAGLIDDTTSDGSDGLPFLSKLPVVGSLFGRKTQ 716

Query: 404 NREETEIFIAATPFLVK-PVAMRDLS 428
           NR   E+ +  TP +V+ P   RDL+
Sbjct: 717 NRNRREVIVLITPSIVRNPQDARDLT 742


>gi|167584994|ref|ZP_02377382.1| general secretion pathway protein D [Burkholderia ubonensis Bu]
          Length = 777

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 122/346 (35%), Gaps = 55/346 (15%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G         +A   + + +  +    Y N   + V++ L+ A   QV ++  + E++  
Sbjct: 359 GEENQPGGMIQADAATNSLIITAPDPVYRN--LRAVIDQLD-ARRAQVYIEALVVELQAT 415

Query: 209 ILKQIGFQHSITGSSSGPSKSF-------AADFGGKFVSEGGDFS--------------- 246
               +G Q  +  ++     +         A  G   +   G  +               
Sbjct: 416 TSGNLGIQWQVANNALFAGTNLPSGASISGAGLGNSIIDLTGRAATSPLTAVSALTPGLN 475

Query: 247 ---VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
              ++ +        +L     ++    L+ P L  +  + A    G      T S S  
Sbjct: 476 IGWLRNMFGVQGLGALLQYFAGSSDANVLSTPNLITLDNEEAKIVVGQNVPIPTGSYSNL 535

Query: 304 A--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSY 351
                     +    D G+ LH  P +   G + +++ TE S  V    +       P++
Sbjct: 536 TSGTGGNAFNTYDRRDVGLTLHVKPQITDGGILKMQLYTEDSSVVQSTVSTSANSPGPTF 595

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   +TV   +G  IVL GL++D+       +PLL  IP +G LFR+   +R++T + 
Sbjct: 596 NKRSIQSTVLADNGEIIVLGGLMQDNYNTSNSKVPLLGDIPWIGQLFRSESKSRQKTNLM 655

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           +   P ++                  + A+A   NR + I G   A
Sbjct: 656 VFLRPVIIND---------------RETAQAVTANRYDYIQGVTGA 686


>gi|260222239|emb|CBA31603.1| hypothetical protein Csp_D27950 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 711

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 121/313 (38%), Gaps = 47/313 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228
           + V++ L+ A   QV ++  IAEV  D   + G Q      ++G S              
Sbjct: 386 RAVIDKLD-ARRAQVFVESLIAEVSADKAAEFGIQWQGALGNAGDSAIGVLGTNFGSAGS 444

Query: 229 ---SFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAIS 281
              S AA      VS     ++ GV +R +       +   LE   +   L+ P L  + 
Sbjct: 445 NIISLAAAGASGTVSPAKGLNI-GVANRTNGVYVLGFLARFLESTGSGNVLSTPNLLTLD 503

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            + A    G    + T   +   +         ++   D G+ L   P +   G I L I
Sbjct: 504 NEEAKIVIGQNVPFVTGQFTNTGSNGGSVNPFQTIERKDVGLTLKVKPQISENGTIKLAI 563

Query: 333 QTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
             EVS  +     A + P+   R  ++ V +  G  +VL GLL+D+    +E +P L+ +
Sbjct: 564 YQEVSSVLASTAGAANGPTTNKRTIESNVLVEDGAVVVLGGLLQDEYAGNQEKVPGLADV 623

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P  G LF++   +R++T + +   P +V+                    +A    R  ++
Sbjct: 624 PWFGNLFKSESRSRKKTNLMVFLRPVVVRD---------------ATATQALSNERYEQM 668

Query: 452 YGPKEASEVEGQN 464
              ++ ++ E  N
Sbjct: 669 RSSQQGAQPEPSN 681


>gi|152991308|ref|YP_001357030.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
 gi|151423169|dbj|BAF70673.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
          Length = 495

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 120/316 (37%), Gaps = 40/316 (12%)

Query: 121 AHLEMTLRRFI--ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
             L+  L+ F+    S++ +   +  V + G    +   +R ++                
Sbjct: 188 DSLKQQLQTFLHDPHSDVFLNKDASIVTVTGTKEELDKVERFLQ---------------- 231

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
                    L      QV ++  I EV+ +  + +G   S        S+S      G  
Sbjct: 232 --------KLQDRMHKQVMIEAKIIEVQYNDDQTVGIDWSKFSLDVTGSRSAQQSRSGST 283

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYK 296
                      +   FS + +L  L++   ++ L+ P +  ++ Q A    G Q  + Y+
Sbjct: 284 KLNNFGTPDYFIGYNFSMQGLLDFLKKYGKVKILSNPKVMTLNNQPAIINVGDQLSYRYE 343

Query: 297 TVSSSTGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVN 344
                TG  +V    Y       G+ L+  P +     I ++I    S           N
Sbjct: 344 NGVVITGGNAVANQTYSIGQTFVGISLYVIPEITENSDIIMKINPVTSALKNENIGYETN 403

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P  R+++  + V++  G  I++ GL+  +  +    +P+L  IPI+G  F++   +
Sbjct: 404 RTLPPDIRLKQVTSIVKVKDGQKILIGGLISKNYSKQFNKVPVLGDIPIIGYAFKSKNNS 463

Query: 405 REETEIFIAATPFLVK 420
            +++E+F+   P +VK
Sbjct: 464 VKKSELFVLIIPKIVK 479


>gi|325914232|ref|ZP_08176582.1| General secretion pathway protein D [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539487|gb|EGD11133.1| General secretion pathway protein D [Xanthomonas vesicatoria ATCC
           35937]
          Length = 778

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 128/326 (39%), Gaps = 41/326 (12%)

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            +    +   V   +    AV  + T L +S    +  +S + V+  L++    QV ++ 
Sbjct: 437 SNGNGAVTLEVEGDKVGVSAVAETNTLLVRSTPQSW--NSIRDVIEKLDVM-PMQVHIEA 493

Query: 201 TIAEVRRDILKQIGFQHSI------------TGSSSGPSKSFAADFG--------GKFVS 240
            IAEV      + G                  G ++G      A           G    
Sbjct: 494 QIAEVNLTGELRYGVNWYFENAVNAPGAATDNGVTNGTGIGLGAGLANAAGRNIWGDIAG 553

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           + G   +       +   ++ AL+  T +R L  P++   +   A+   G +    + S 
Sbjct: 554 KVGSGGLAWSFLGKNAAAIISALDTVTNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSI 613

Query: 301 STG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIGV 343
           +TG       +SV   D GV+L   P V   G + L I  EVS P               
Sbjct: 614 NTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSPGDRPTACASATATVN 673

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            A        R+  T   + SG TI+LAGL++D       G+P LSK+P+LG+LF     
Sbjct: 674 QAACNVDINTRRIKTEAAIQSGDTIMLAGLIQDSTSDGSAGVPFLSKLPVLGSLFGQKTQ 733

Query: 404 NREETEIFIAATPFLVK-PVAMRDLS 428
           N+  +E+ +  TP +V+ P+  R+L+
Sbjct: 734 NKRRSEVIVLLTPSIVRNPMEARNLT 759


>gi|218706590|ref|YP_002414109.1| general secretion pathway protein D [Escherichia coli UMN026]
 gi|300900296|ref|ZP_07118475.1| general secretion pathway protein D [Escherichia coli MS 198-1]
 gi|331648754|ref|ZP_08349842.1| general secretion pathway protein D [Escherichia coli M605]
 gi|331664576|ref|ZP_08365482.1| general secretion pathway protein D [Escherichia coli TA143]
 gi|218433687|emb|CAR14602.1| general secretion pathway protein D precursor [Escherichia coli
           UMN026]
 gi|300356186|gb|EFJ72056.1| general secretion pathway protein D [Escherichia coli MS 198-1]
 gi|331042501|gb|EGI14643.1| general secretion pathway protein D [Escherichia coli M605]
 gi|331058507|gb|EGI30488.1| general secretion pathway protein D [Escherichia coli TA143]
          Length = 686

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|281180003|dbj|BAI56333.1| putative type II secretion protein [Escherichia coli SE15]
          Length = 659

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 289 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 347

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 348 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 407

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 408 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 467

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 468 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 527

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 528 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 585

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 586 KRNLMVFIRPTILRDGMAAD 605


>gi|332308478|ref|YP_004436329.1| pilus (MSHA type) biogenesis protein MshL [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175807|gb|AEE25061.1| pilus (MSHA type) biogenesis protein MshL [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 552

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 65/257 (25%), Positives = 107/257 (41%), Gaps = 23/257 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGKFVSEGGDFSVKG 249
           + QV L+  I EV      Q G   S   ++SG +    S  +   G  +S         
Sbjct: 280 QRQVILEARILEVSLSDGYQQGINWSEILANSGSTDFQFSTTSGSLGDAISATLGGVTSL 339

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------- 301
                 F  VL+ L+    ++ L+ P +TAI+ Q A    G    + T  SS        
Sbjct: 340 SFVNKDFSGVLNLLQTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSESTVTAAT 399

Query: 302 ---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVN----AGDMP 349
              T    +T    G+ L  TP + + G + L +   V      E V+ +N       + 
Sbjct: 400 ASTTPNIELTPFFSGIALDVTPQIDAQGGVLLHVHPSVIETEEQEKVVTLNEEQFVLPLA 459

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +  +R++DT +   SG  +V+ GL++  I + +   PLL  IP+LG LF+N + +  + E
Sbjct: 460 ASNIRESDTIIHARSGEIVVIGGLMQSIISETESKTPLLGDIPLLGNLFKNRQESEIKKE 519

Query: 410 IFIAATPFLVKPVAMRD 426
           + I   P +V     R 
Sbjct: 520 LVILLRPTVVSADTWRQ 536


>gi|323183550|gb|EFZ68947.1| general secretion pathway protein D [Escherichia coli 1357]
          Length = 686

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|54306408|gb|AAV33391.1| type IV pilus biogenesis secretin PilQ [Moraxella catarrhalis 7169]
 gi|326559645|gb|EGE10059.1| type IV pilus secretin PilQ [Moraxella catarrhalis 7169]
 gi|326567677|gb|EGE17783.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC1]
 gi|326568688|gb|EGE18759.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC7]
          Length = 473

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 29/299 (9%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           T  + G + + + +    + + T + Q      AN   K ++  ++I   +QV ++  I 
Sbjct: 182 TTAVRGTLLSERGTVTVDKRTNTLIIQDVPASVAN--IKALIERIDIP-VEQVMIEARIV 238

Query: 204 EVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGG--------DFSVKGVL 251
               +  +++G      G +     G S+        + V+ GG        D  V   +
Sbjct: 239 SANENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMWQEGVAAGGHQNSHLNVDLGVDNAM 298

Query: 252 DRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            R +F          +  L A++       ++ P +     Q+A  +SG Q  Y+  + S
Sbjct: 299 GRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHS 358

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            GA++    +  ++L  TP +   G+IGL++  +   PV  +      + +    +T V 
Sbjct: 359 -GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL---GHIAIQEDAIETNVI 414

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ I  TP LV+
Sbjct: 415 IEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473


>gi|323494567|ref|ZP_08099671.1| general secretion pathway protein D [Vibrio brasiliensis LMG 20546]
 gi|323311170|gb|EGA64330.1| general secretion pathway protein D [Vibrio brasiliensis LMG 20546]
          Length = 674

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 107/292 (36%), Gaps = 46/292 (15%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------------- 217
           ++ + V++ L+I    QV ++  I E+       +G Q                      
Sbjct: 329 NALQDVISQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAVIQYGNTGVPIGQV 387

Query: 218 ------------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
                             S          +   D+     +  G       +    +  +
Sbjct: 388 MVGLEEAKDTTTTESYWNSTDNKWESRQTTEQGDYSTLASALSGAQGAALSVVMGDWTAL 447

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGV 314
           + A+   +    L+ P++T +    ASF  G +    T S++         +V   + G+
Sbjct: 448 ISAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGI 507

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L   P +     + L I+ EVS  V+G N      +  R+ +T+V +  G  IVL GL+
Sbjct: 508 KLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVEDGAMIVLGGLI 566

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +   + +  +PLL  IP LG LF+++    E+  + +   P +++     D
Sbjct: 567 DERALESESKVPLLGDIPYLGHLFKSTSTQVEKKNLMVFIKPTIIRDGMTAD 618


>gi|293412339|ref|ZP_06655062.1| general secretion pathway protein D [Escherichia coli B354]
 gi|293449309|ref|ZP_06663730.1| general secretion pathway protein D [Escherichia coli B088]
 gi|291322399|gb|EFE61828.1| general secretion pathway protein D [Escherichia coli B088]
 gi|291469110|gb|EFF11601.1| general secretion pathway protein D [Escherichia coli B354]
          Length = 679

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 368 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 427

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625


>gi|152986624|ref|YP_001348780.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
 gi|150961782|gb|ABR83807.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
          Length = 758

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 115/263 (43%), Gaps = 23/263 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------- 234
           ++++  L++    Q+ ++  I E+  ++ + +G Q ++ G  +    SFA          
Sbjct: 329 EEIVRQLDVP-RAQLLVEAAIVELTGELNEALGVQWAMRGGHAVGGTSFAGSGLSIGTLL 387

Query: 235 ----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                GK  +E  D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G
Sbjct: 388 GALQSGKPPAELPDGAIVGLGSR-DFGALITALTRNSNSNLLSTPSLLTLDNQKAEILVG 446

Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               ++T S +T +       T+V   D GV L  TP +     + L I+ E+S      
Sbjct: 447 QNVPFQTGSYTTNSEGSSNPFTTVERKDIGVTLKVTPHIGDDRMLRLEIEQEISSIAPAA 506

Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                        R   +TV    G  IVL GL++DD+ +    +PLL  IP +G LFR+
Sbjct: 507 TLAAKTVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDVVRSDSRVPLLGDIPGVGRLFRS 566

Query: 401 SRFNREETEIFIAATPFLVKPVA 423
           +R  R +  + +   P +V+   
Sbjct: 567 TRDTRVKRNLMVFLRPSIVRDAV 589


>gi|300973519|ref|ZP_07172233.1| general secretion pathway protein D [Escherichia coli MS 45-1]
 gi|300410735|gb|EFJ94273.1| general secretion pathway protein D [Escherichia coli MS 45-1]
 gi|315291309|gb|EFU50669.1| general secretion pathway protein D [Escherichia coli MS 153-1]
          Length = 681

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 370 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 429

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627


>gi|226951776|ref|ZP_03822240.1| general secretion pathway protein [Acinetobacter sp. ATCC 27244]
 gi|226837491|gb|EEH69874.1| general secretion pathway protein [Acinetobacter sp. ATCC 27244]
          Length = 735

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 97/253 (38%), Gaps = 26/253 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++  I EV     +Q+G Q  +   +SG      ++ G         +   G + 
Sbjct: 384 RQQVLIEAAIIEVVGGDAEQLGVQWVLGDLNSGVGLVNFSNLGSGLSKIAAGYLTGGAVG 443

Query: 253 -------------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                              R ++  ++ AL+  T    L+ P++  +  + A    G   
Sbjct: 444 AAGAFGDGASIGLGNFENPRRAYGALIQALKANTKSNFLSTPSIVTMDNEEAYIVVGQNV 503

Query: 294 LYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
            + T S +T         T+V   D G+ L   P +   G I L ++ EVS         
Sbjct: 504 PFVTGSVATQGNSTVNPYTTVERKDVGITLKVVPHIGEGGSIRLEVEQEVSNVQPNRGQA 563

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
                  R   T+V    G T++L GL+ DD    ++ IP+L  IP LG LFR    + +
Sbjct: 564 TDLVTSKRAIKTSVLADHGQTVILGGLISDDTNLTRQSIPVLGDIPYLGRLFRADTRSND 623

Query: 407 ETEIFIAATPFLV 419
           +  + +   P +V
Sbjct: 624 KRNLLVFIHPTIV 636


>gi|90414685|ref|ZP_01222656.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum 3TCK]
 gi|90324227|gb|EAS40802.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum 3TCK]
          Length = 670

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 113/287 (39%), Gaps = 42/287 (14%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------TGSSSGPSKSFA- 231
           + + ++  L+I    QV ++  I E+        G Q+          G+S  P   +A 
Sbjct: 330 ALESIIAQLDIR-RAQVLIEAMIVELSEGDGINFGVQYGSEDGGVIQFGNSGVPISQYAI 388

Query: 232 ---------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
                                       DF       GG       +    +  +++A+ 
Sbjct: 389 GLQEAQDVPGSTVTDVNGNVTVNEPTQGDFSTLASVLGGVNGAAMGIVLGDWTMLVNAVA 448

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFT 319
             +    L+ P++T +    ASF  G +    T S     +     +V   + G+ L+ T
Sbjct: 449 TDSNSNILSSPSITVMDNGEASFIVGEEVPVVTGSTSSSSNDNPFQTVERKEVGIKLNVT 508

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + L+I+ EVS  +    A D+  +  R+ +T+V +  G  I L GL+ ++ +
Sbjct: 509 PQINEGDSVQLKIEQEVSSVLGASGAVDV-RFAKRQINTSVLVQDGQMIALGGLISEETK 567

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + +  +P+L  IP LG LF+++     +T + +   P +++     D
Sbjct: 568 ESESKVPILGDIPFLGFLFKSTNTTTAKTNLMVFIKPTIIRDGVTAD 614


>gi|294649022|ref|ZP_06726469.1| general secretion pathway protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825090|gb|EFF83846.1| general secretion pathway protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 735

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 97/253 (38%), Gaps = 26/253 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++  I EV     +Q+G Q  +   +SG      ++ G         +   G + 
Sbjct: 384 RQQVLIEAAIIEVVGGDAEQLGVQWVLGDLNSGVGLVNFSNLGSGLSKIAAGYLTGGAVG 443

Query: 253 -------------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                              R ++  ++ AL+  T    L+ P++  +  + A    G   
Sbjct: 444 AAGAFGDGASIGLGNFENPRRAYGALIQALKANTKSNFLSTPSIVTMDNEEAYIVVGQNV 503

Query: 294 LYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
            + T S +T         T+V   D G+ L   P +   G I L ++ EVS         
Sbjct: 504 PFVTGSVATQGNSTVNPYTTVERKDVGITLKVVPHIGEGGSIRLEVEQEVSNVQPNRGQA 563

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
                  R   T+V    G T++L GL+ DD    ++ IP+L  IP LG LFR    + +
Sbjct: 564 TDLVTSKRAIKTSVLADHGQTVILGGLISDDTNLTRQSIPVLGDIPYLGRLFRADTRSND 623

Query: 407 ETEIFIAATPFLV 419
           +  + +   P +V
Sbjct: 624 KRNLLVFIHPTIV 636


>gi|9626321|ref|NP_040655.1| hypothetical protein Pf3_5 [Pseudomonas phage Pf3]
 gi|138034|sp|P03668|VG430_BPPF3 RecName: Full=Putative assembly protein ORF430; Short=ORF430;
           Flags: Precursor
 gi|215375|gb|AAA88381.1| unknown protein [Pseudomonas phage Pf3]
 gi|215384|gb|AAA88390.1| unknown protein [Pseudomonas phage Pf3]
          Length = 430

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 100/240 (41%), Gaps = 5/240 (2%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + + V+  +++    QV ++  + E   D  K++G       S    S   A D     V
Sbjct: 173 ALESVIQAIDVP-VRQVAIEANVVEASVDWSKRLGLNWGGALSLGNWSAVTAGDLS---V 228

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           + G       + +  S + +  A+E     R ++ PTL  +  QSAS   G +  Y+  S
Sbjct: 229 AAGSSIGFGFLSNTLSLDGLFTAMENEGNGRVVSRPTLLTLDRQSASVLRGTELPYQQ-S 287

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           +  GATSV      + L   P +     I + +      P        +P     +  TT
Sbjct: 288 AGDGATSVAFKHAALSLEVKPVISPDNSIVIEVLVSRDSPNFSNAIDGVPPIDTNRLVTT 347

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +P G T+VL G+     QQ    +  +S+IP +G LF+      E+ E+ I  TP ++
Sbjct: 348 IRVPHGQTVVLGGVYSTINQQGSSRVSGISRIPGIGRLFKKKEHVTEQYELLIFLTPRIL 407


>gi|121607022|ref|YP_994829.1| type IV pilus secretin PilQ [Verminephrobacter eiseniae EF01-2]
 gi|121551662|gb|ABM55811.1| type IV pilus secretin PilQ [Verminephrobacter eiseniae EF01-2]
          Length = 712

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 122/320 (38%), Gaps = 46/320 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEV 205
            G   T   S+R   ++E   +Q      A+     ++++  L++A   QV ++  I E 
Sbjct: 396 AGGSSTRFLSERGSAIAEPRTNQLFVTDTASKQEEVRQLLARLDVA-VRQVMIEARIVEA 454

Query: 206 RRDILKQIGFQHSITGSS-----------------------------SGPSKSFAADFGG 236
           R    + +G +   T  S                             SG + S A D GG
Sbjct: 455 RDSFGRSLGVRLGSTDLSASRKGTGGYGIGGNKRVAYGTSYSDAVKASGANGSTAPDTGG 514

Query: 237 KFVSEGGDFSVKGVLDRFSFE-----------TVLHALERATAIRTLAEPTLTAISGQSA 285
            FV+     S    +  F+               L A+E     R ++ P +       A
Sbjct: 515 NFVNLPASLSSVNTVGSFALSIFNAATNKFLTLELSAMEADGKGRIVSSPRIITADQTKA 574

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
               G ++ Y  V++  GAT++      + L  +P +   G I L +  +VS+   G   
Sbjct: 575 LIEQGTEYPY-AVTAPNGATTLAFKKAVLKLEVSPQITPEGNIILDL--DVSKDSRGETT 631

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
               +   +   T + + +GGT+V+ G+ + +    +  IP L  +P++G LF++     
Sbjct: 632 SQGVAIDTKHIKTQILIENGGTVVIGGIFEMEETSQENKIPFLGDVPVVGNLFKSKTKET 691

Query: 406 EETEIFIAATPFLVKPVAMR 425
            + E+ I  TP ++     +
Sbjct: 692 TKREMLIFITPKVIADSGPK 711


>gi|152989153|ref|YP_001346800.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
 gi|150964311|gb|ABR86336.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
          Length = 634

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 119/264 (45%), Gaps = 22/264 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---FGGKF 238
             V+  L+     QV ++  I EV  DI + +G Q +          SF       G   
Sbjct: 325 DNVIAQLDRP-RAQVLVEAAIVEVSGDINEALGVQWAARAGDVAGGTSFGNGGLTIGSLL 383

Query: 239 VSEGG------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
             E G      D ++ G+  R +F  ++ AL   +    L+ P+L  +  ++A    G  
Sbjct: 384 NQEAGKRPNLPDGAIIGIGSR-NFGALVTALSSDSNNNLLSTPSLLTLDNEAAEILVGQN 442

Query: 293 HLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---G 342
             ++T S +T +       T+V   D G+ L  TP +     + L+++ E SE      G
Sbjct: 443 VPFQTGSYTTDSAGASNPFTTVERKDVGITLKVTPHINEGDTLRLKVEQESSELASAPAG 502

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           ++  D+ +   R   +T+    G  IV+ GL+KD+++     +PLL  IP+LG LFR+++
Sbjct: 503 ISTSDVIT-NKRSVKSTILADDGQIIVIGGLIKDNVKTQVSKVPLLGSIPLLGRLFRSTK 561

Query: 403 FNREETEIFIAATPFLVKPVAMRD 426
              E+T + +   P L++  A  D
Sbjct: 562 DVNEKTNLMVFLRPTLLRNTANAD 585


>gi|237801193|ref|ZP_04589654.1| general secretion pathway protein D [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024050|gb|EGI04107.1| general secretion pathway protein D [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 333

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 117/309 (37%), Gaps = 21/309 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEV 205
            G     +    +  ++    S     +   +  K++ + +        QV ++  I EV
Sbjct: 12  SGSAGNGKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEV 71

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKFVSEGGDFSVKGVLDRF-------SFE 257
                  +G Q  +   +     +   A+  G   + G   +  G  D F       + +
Sbjct: 72  SLTGELDMGVQWYLGRLAGNSGTTGNVANTAGSQGALGTGGAALGATDAFFYSFVSNNLQ 131

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHD 311
             L ALER    + L+ P+L  ++ Q A    G              S++T  +SV    
Sbjct: 132 VALRALERNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQ 191

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTI 368
            GV+L   P +   G + + IQ +VS      +       P    R   T V   SG TI
Sbjct: 192 TGVILDVVPRINPGGLVYMDIQQQVSNADNNASNNDANGNPRISSRSVSTQVAAQSGQTI 251

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +L GL+K D  +  + +P L +IP L  LF  +  ++  TE+ +  TP ++   +     
Sbjct: 252 LLGGLIKQDNAETVDAVPYLGRIPGLRWLFGTTSKSKGRTELIVLITPRVI--TSSSQAR 309

Query: 429 RPDDHYSVE 437
           +  D Y  +
Sbjct: 310 QVTDDYRQQ 318


>gi|254515204|ref|ZP_05127265.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
 gi|219677447|gb|EED33812.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
          Length = 682

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 116/319 (36%), Gaps = 52/319 (16%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAA 232
           ++ + V+  L+I    QV ++  I E+     + +G Q          GSS   S + A 
Sbjct: 333 AAVESVITRLDIR-RAQVLVEAIIVELEVTDGQDLGLQWLFANDNGFYGSSINASDARAR 391

Query: 233 DFGGKFVSEGGDFSVKGVLDRF--------------------------SFETVLHALERA 266
           +  G  +   GD         F                          S   +L+ALE  
Sbjct: 392 NIAGAILPPDGDGGSGATTGDFDVGNLAAALAGSAGLSLGWGVVGEDLSMTVILNALEEQ 451

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLH 317
           +    L+ P+L  +  + A  T G Q  + T S +             ++   + G+ L 
Sbjct: 452 SNANILSTPSLLTLDNEEAFITVGQQVPFITGSFTNTGGNNGAQNPFQTIERENVGITLT 511

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP----SYRVRKADTTVELPSGGTIVLAGL 373
            TP V     + L I+ EV+                    RK  T V    G  +VL GL
Sbjct: 512 VTPQVNEGDSVVLEIEQEVNSLTGATLVASAAAADLITNERKIRTKVLAEDGRIVVLGGL 571

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP--- 430
           +KDD+Q  ++ +P+L  IP LG LFRN   +  +T + I   P +++       +     
Sbjct: 572 IKDDVQSTEQRVPILGDIPFLGRLFRNDAVSVSKTNLMIFIRPTIIRDDKALAGATALKY 631

Query: 431 ---DDHYSVEDDAKAFFFN 446
               D   V+ +    FF 
Sbjct: 632 RHIRDEQRVQKEQGLMFFG 650


>gi|2853000|gb|AAC38777.1| XqhA [Pseudomonas aeruginosa]
          Length = 713

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 122/312 (39%), Gaps = 38/312 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
           + ++  L++    Q+ ++  I E+  +I   +G Q ++          FA          
Sbjct: 340 EDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLL 398

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A   GK  +E  D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G
Sbjct: 399 GALQAGKPPAELPDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVG 457

Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               ++T S +T A       T+V   D GV L  TP +     + L I+ E+S      
Sbjct: 458 QNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTA 517

Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                        R   +TV    G  IVL GL++DD+Q+    +PLL  IP +G LFR+
Sbjct: 518 TLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRS 577

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
           SR  R +  + +   P +V+  A                 +     R   I   + A+  
Sbjct: 578 SRETRVKRNLMVFLRPSIVRDAAG---------------LERISHGRYRSIQLLRGAAGE 622

Query: 461 EGQNYKGAIGFI 472
             +      G I
Sbjct: 623 PARPLFEDAGAI 634


>gi|153870872|ref|ZP_02000179.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           PS]
 gi|152072664|gb|EDN69823.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           PS]
          Length = 698

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 94/261 (36%), Gaps = 36/261 (13%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS---SSGPSKSFAADFGGKFVSEGGDFSVK-- 248
            QV ++  I     +  K +G +   + +     G    F    GG     GG       
Sbjct: 437 RQVLIESRIVIANNNFSKALGVKFGYSANEDLGFGNGIVFGGKKGGDTTFSGGTGFSSDN 496

Query: 249 -----------------------------GVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                                        G +  +  +  L A++   +   ++ P +  
Sbjct: 497 TATGEGQGENFIVSLPAAIANPAAVGLAIGKIGSYLLQLELSAMQSEGSGEIISNPRIIT 556

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            + Q A  T G +  Y   +       V      + L  TP +    R+ + +  +   P
Sbjct: 557 GNQQEAIITQGTEIPYVQQAGVGSVAQVQFKQAVLELKVTPQITPDDRVNMELAVKKDSP 616

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
             GVN G   S   R+  T V + +G T+VL G+ +         IP  + +P++G LF+
Sbjct: 617 --GVNIGGNLSIDKREVKTNVLVDNGETVVLGGVYERTRSNAINRIPFFADLPLIGELFK 674

Query: 400 NSRFNREETEIFIAATPFLVK 420
           N   + +++E+ I  TP ++K
Sbjct: 675 NRSKSDDKSELLIFVTPKILK 695


>gi|294625731|ref|ZP_06704351.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599967|gb|EFF44084.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 763

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 79/328 (24%), Positives = 131/328 (39%), Gaps = 49/328 (14%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            +  + +E+  D V +            AV  + T L +S    +  SS + V+  L++ 
Sbjct: 434 GNGAVTLEVAGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 480

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKFV 239
              QV ++  +AEV      Q G       +             S   +S   D  G   
Sbjct: 481 -PMQVHIEAQVAEVNLTGELQYGVNWYFENAVNAATAAGGAGLPSAAGRSIWGDISGTVT 539

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           + G  ++  G     +   V+ AL+  T +R L  P++   +   A+   G +    + S
Sbjct: 540 NGGVGWTFLGK----NAAAVISALDTVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTS 595

Query: 300 SSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------ 347
            +TG       +SV   D GV+L   P V   G + L I  E+S P     A        
Sbjct: 596 INTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEISTPGARPQACTAAATTT 655

Query: 348 ------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                       R+  T   + SG T++LAGL+ D    +  G+P LSK+P++GALF   
Sbjct: 656 VNSAACNVDINTRRVKTEAAVQSGDTMMLAGLIDDSTTDISAGVPFLSKLPVVGALFGQK 715

Query: 402 RFNREETEIFIAATPFLVK-PVAMRDLS 428
             +    E+ +  TP +V+ P   R+L+
Sbjct: 716 NKDTNRREVIVLITPTIVRNPQEARNLT 743


>gi|15600233|ref|NP_253727.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa PAO1]
 gi|12230952|sp|P34750|PILQ_PSEAE RecName: Full=Fimbrial assembly protein pilQ; Flags: Precursor
 gi|9951330|gb|AAG08425.1|AE004917_4 Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa PAO1]
          Length = 714

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 109/287 (37%), Gaps = 39/287 (13%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------- 218
           + Q      +++++ L+I    QV ++  I E      K +G +                
Sbjct: 428 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKD 486

Query: 219 ---------------ITGSSSGPSKSFA------ADFGGKFVSEGGDFSVKGVLDRFSFE 257
                          I GS + P+   +       D G K  + G    +  + D    +
Sbjct: 487 GNIGIKDEDGMNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSG--IGIGFITDNIILD 544

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
             L A+E+      +++P +     ++A    G +  Y+  SSS   ++ +  +  + L 
Sbjct: 545 LQLSAMEKTGNGEIVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLE 603

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP +    RI + ++     P        +P     + +  + +  G TIV+ G+  ++
Sbjct: 604 VTPQITPDNRIIVEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNE 663

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
             +  E +P L ++P LG LFR       + E+ +  TP ++   A+
Sbjct: 664 QSKSVEKVPFLGELPYLGRLFRRDTVTDRKNELLVFLTPRIMNNQAI 710


>gi|324119774|gb|EGC13654.1| general secretion pathway protein D [Escherichia coli E1167]
          Length = 686

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|123443753|ref|YP_001007724.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|27529236|emb|CAC83029.1| Yts1D protein [Yersinia enterocolitica (type 0:8)]
 gi|122090714|emb|CAL13590.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 658

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 108/285 (37%), Gaps = 18/285 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++V+N L+I    QV ++  I EV+      +G Q     +  G +            S 
Sbjct: 348 EQVINQLDIR-RAQVLVEAIIVEVQDSDALNLGVQW-FNRNGGGSNFPENGASASSITSN 405

Query: 242 GGDFSVKGVLD------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
               S+KG+        R ++  +  AL   +    LA P++  +    A F+ G +   
Sbjct: 406 DMGSSLKGITGLATGFYRGNWSGLFTALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPV 465

Query: 296 KTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDM 348
            + S +T       +V     G+ L   P +     + L I+ EVS       G      
Sbjct: 466 LSGSQTTTGDNIFRTVDRKSVGIKLKVKPQINKGDSVLLEIEQEVSSVAEKAPGGTGDLG 525

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            ++  R     V + S   +V+ GLL      +   +PLL  IP +G LFR++     + 
Sbjct: 526 ATFNTRMVKNAVMVGSNNIVVVGGLLDSTSHDVTSKVPLLGDIPGIGFLFRSTSQKMVKR 585

Query: 409 EIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFN-RVNK 450
            + +   P +++     +    +  D +  E D        R+N+
Sbjct: 586 NLMLFIRPTIIREQGDYVDASKKKLDKFQQEQDIDRTTNGQRINE 630


>gi|54302290|ref|YP_132283.1| Flp pilus assembly protein [Photobacterium profundum SS9]
 gi|46915712|emb|CAG22483.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           SS9]
          Length = 296

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 114/261 (43%), Gaps = 31/261 (11%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           ++V   + + IS+  NK  ++++P   + + V +P  AD+++     +Y+ GK  G  NV
Sbjct: 28  TNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNKIYVLGKQFGTTNV 87

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I+     + +  LD+ +  D+  L+  L  F+ +  I V    + +VL G V +      
Sbjct: 88  IIWDSRDQLITVLDVEVTHDLNALKSKLYEFMPNEKISVYTSQNKLVLSGEVSSADKIAT 147

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           AVE++ TF           ++  +++NL+ + G  QV L+VT+AEV+R ++++   +  +
Sbjct: 148 AVEIANTF-----------TADGEIINLMAVGGSHQVMLEVTVAEVQRSLVREFDSKF-V 195

Query: 220 TGSSSGPSKSFAADFGGKFVSEGG-------------------DFSVKGVLDRFSFETVL 260
               SG      A+ G    S  G                         +     F    
Sbjct: 196 FAHQSGNWTWGGANGGASVPSNVGIIDPIIDAAISNPLSIDDNGLFASFLSSNTLFAAAF 255

Query: 261 HALERATAIRTLAEPTLTAIS 281
              +     + LAEPTLTAIS
Sbjct: 256 DIAKTNGLAKVLAEPTLTAIS 276


>gi|89075297|ref|ZP_01161724.1| MSHA biogenesis protein MshL [Photobacterium sp. SKA34]
 gi|89048978|gb|EAR54546.1| MSHA biogenesis protein MshL [Photobacterium sp. SKA34]
          Length = 541

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 26/299 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           V+ GM+ +  D +  +   +  L             K+ + +     + QV L+  I EV
Sbjct: 220 VVSGMIGS-GDGRNVMVSPQAGLISVRAFPNELREVKEFLGMSQRRLKRQVVLEAKIMEV 278

Query: 206 RRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
             D   Q G   S       G ++G +    A  GG  +SE         L   +F+ V+
Sbjct: 279 TLDDSYQQGINWSYLTKSGNGITTGTASIVEALPGGNAISELLGGQTNITLSDGNFKAVM 338

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----------SVTTH 310
             L     +  L+ P +TA + Q A    GG   + T  SS+  +          S+T  
Sbjct: 339 SFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNNVSPDVSLTPF 398

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS----------YRVRKADTTV 360
             G+ L  TP +   G + L +   V +        ++ +            +R++D+ +
Sbjct: 399 FSGISLDVTPQIDDQGGVLLHVHPAVIDVQNEQKTIEVGTEKPMVLPLAKSTIRESDSII 458

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              +G  +V+ GL+K  I      +PLL  IP +G LFR+    +++TE+ I   P +V
Sbjct: 459 HARTGDVVVIGGLMKSSINDQVSKVPLLGDIPWVGNLFRHINKVKKKTELVILLKPTVV 517


>gi|192361327|ref|YP_001983786.1| general secretion pathway protein D [Cellvibrio japonicus Ueda107]
 gi|190687492|gb|ACE85170.1| General secretion pathway protein D [Cellvibrio japonicus Ueda107]
          Length = 681

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 120/317 (37%), Gaps = 54/317 (17%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------------- 229
           +++ L+I    QV ++  IAEV  +  K++G +        G   S              
Sbjct: 343 IVDSLDIR-RAQVLVEAIIAEVSDEDGKELGIEWMYRDDKYGFGASANGSRGSIGGIGSA 401

Query: 230 -----------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                             A    G     G  F    + +R  F  VL  ++ ++    L
Sbjct: 402 VLAASDKNASQDDKDTALANLASGLSGLSGQMFGFGRLGERTDFLAVLKLMQSSSKTNIL 461

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFTPT 321
           + P+L       A  + G Q  ++T S S   T           ++   D G+ L  TP 
Sbjct: 462 STPSLLTTDNNQAVISVGRQVPFRTGSYSAVGTGGNSTIGSPFTTINREDVGLKLEVTPH 521

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     I L I+ EVS  +  V++ D      R+  T +    G TIVL GL+ D++Q  
Sbjct: 522 INEGDSIVLDIKQEVSS-LSDVSSEDGIITNKREIQTQILSSDGETIVLGGLITDEVQTG 580

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           +  +P+L  IP+LG LFR+   ++ +T + +     +V+          DD       A+
Sbjct: 581 ERRVPVLGSIPVLGQLFRSQTSSKSKTNLLVFIRATVVR----------DDKVLTGSTAE 630

Query: 442 AFFFNRVNKIYGPKEAS 458
            +   R  ++   +   
Sbjct: 631 KYRLIREEQLNHVRNRG 647


>gi|313110077|ref|ZP_07795979.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa 39016]
 gi|310882481|gb|EFQ41075.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa 39016]
          Length = 714

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 108/287 (37%), Gaps = 39/287 (13%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------- 218
           + Q      +++++ L+I    QV ++  I E      K +G +                
Sbjct: 428 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNWNGYGKD 486

Query: 219 ---------------ITGSSSGPSKSFA------ADFGGKFVSEGGDFSVKGVLDRFSFE 257
                          I G+ + P+   +       D G K  + G    +  + D    +
Sbjct: 487 GNIGIKDEDGMNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSG--IGIGFITDNIILD 544

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
             L A+E+      +++P +     ++A    G +  Y+  SSS   ++ +  +  + L 
Sbjct: 545 LQLSAMEKTGNGEIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLE 603

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP +    RI + ++     P        +P     + +  + +  G TIV+ G+  + 
Sbjct: 604 VTPQITPDNRIIVEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNT 663

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
             +  + +P L  +P LG LFR    +  + E+ +  TP ++   A+
Sbjct: 664 QSKSVDKVPFLGDLPYLGRLFRRDTVSDVKNELLVFLTPRIMNNQAI 710


>gi|218894139|ref|YP_002443008.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa LESB58]
 gi|218774367|emb|CAW30184.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa LESB58]
          Length = 714

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 108/287 (37%), Gaps = 39/287 (13%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------- 218
           + Q      +++++ L+I    QV ++  I E      K +G +                
Sbjct: 428 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNWRGYGKD 486

Query: 219 ---------------ITGSSSGPSKSFA------ADFGGKFVSEGGDFSVKGVLDRFSFE 257
                          I G+ + P+   +       D G K  + G    +  + D    +
Sbjct: 487 GNIGIKDEDGMNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSG--IGIGFITDNIILD 544

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
             L A+E+      +++P +     ++A    G +  Y+  SSS   ++ +  +  + L 
Sbjct: 545 LQLSAMEKTGNGEIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLE 603

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP +    RI + ++     P        +P     + +  + +  G TIV+ G+  + 
Sbjct: 604 VTPQITPDNRIIVEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNT 663

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
             +  + +P L  +P LG LFR    +  + E+ +  TP ++   A+
Sbjct: 664 QSKSVDKVPFLGDLPYLGRLFRRDTVSDVKNELLVFLTPRIMNNQAI 710


>gi|254244078|ref|ZP_04937400.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa 2192]
 gi|126197456|gb|EAZ61519.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa 2192]
          Length = 714

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 108/287 (37%), Gaps = 39/287 (13%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------- 218
           + Q      +++++ L+I    QV ++  I E      K +G +                
Sbjct: 428 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNWRGYGKD 486

Query: 219 ---------------ITGSSSGPSKSFA------ADFGGKFVSEGGDFSVKGVLDRFSFE 257
                          I G+ + P+   +       D G K  + G    +  + D    +
Sbjct: 487 GNIGIKDEDGMNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSG--IGIGFITDNIILD 544

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
             L A+E+      +++P +     ++A    G +  Y+  SSS   ++ +  +  + L 
Sbjct: 545 LQLSAMEKTGNGEIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLE 603

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP +    RI + ++     P        +P     + +  + +  G TIV+ G+  + 
Sbjct: 604 VTPQITPDNRIIVEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNT 663

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
             +  + +P L  +P LG LFR    +  + E+ +  TP ++   A+
Sbjct: 664 QSKSVDKVPFLGDLPYLGRLFRRDTVSDVKNELLVFLTPRIMNNQAI 710


>gi|319789878|ref|YP_004151511.1| type II and III secretion system protein [Thermovibrio ammonificans
           HB-1]
 gi|317114380|gb|ADU96870.1| type II and III secretion system protein [Thermovibrio ammonificans
           HB-1]
          Length = 663

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 105/257 (40%), Gaps = 30/257 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------ 246
             QV +K  I ++     K +GF   I+G +     + +    G +      ++      
Sbjct: 397 SKQVLVKAKIVQLSAKAEKDLGFTWFISGYNRLGDSNLSTYTAGSYGFNTAGYTPLISPD 456

Query: 247 ---------------VKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                            G+L++      E  L ALE     + ++ P +  +  Q AS  
Sbjct: 457 TYANVSKIPVMDSTLALGILNKAQTLRVELALKALEVDGDAQIISSPKVLTLDNQEASIE 516

Query: 289 SGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IG 342
            G +  Y+  +   G  +   +      ++L   P +     I L I+     P    + 
Sbjct: 517 QGIEIPYRESTVGAGGATSYRIAFKKASLILKVKPHITKDNNILLDIEVRKDSPNYDYVA 576

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +  G+ P+   R   + V + +G T+V+ G+ + +  + + G+P+LS+IP+LG LF+N  
Sbjct: 577 ITGGNEPAINTRNVKSRVMIRNGDTVVIGGIYEKERSKSQSGVPVLSRIPLLGWLFKNQT 636

Query: 403 FNREETEIFIAATPFLV 419
               ++++ I  TP L+
Sbjct: 637 VQVTKSKLLIFITPVLI 653


>gi|289668624|ref|ZP_06489699.1| general secretion pathway protein D [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 760

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 81/327 (24%), Positives = 129/327 (39%), Gaps = 44/327 (13%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            +  + +++  D V +            AV  + T L +S    +  SS + V+  L++ 
Sbjct: 428 GNGAVTLDVSGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 474

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSI---------TGSSSGPSKSFAA--DFGGKFVS 240
              QV ++  IAEV        G                 S GP+   AA  +  G    
Sbjct: 475 -PMQVHIEAQIAEVNLTGELSYGVNWYFENAVTTPFNADGSGGPALPSAAGRNIWGDIAG 533

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                 V       +   V++AL+R T +R L  P++   +   A+   G +    + S 
Sbjct: 534 SVTGNGVGWTFLGKNAAAVINALDRVTNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSI 593

Query: 301 STG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------- 347
           +TG       +SV   D GV+L   P V   G + L I  EVS P     A         
Sbjct: 594 NTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAATTTTV 653

Query: 348 -----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                      R+  T   + SG T++LAGL+ D       G+P LSK+P++GALF    
Sbjct: 654 NSAACNVDINTRRVKTEAAVQSGDTMMLAGLIDDSTSDGSAGVPFLSKLPVVGALFGQKT 713

Query: 403 FNREETEIFIAATPFLVK-PVAMRDLS 428
            +    E+ +  TP +V+ P   R+L+
Sbjct: 714 RDNTRREVIVLITPSIVRNPQEARNLT 740


>gi|107104140|ref|ZP_01368058.1| hypothetical protein PaerPA_01005213 [Pseudomonas aeruginosa PACS2]
          Length = 714

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 109/287 (37%), Gaps = 39/287 (13%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------- 218
           + Q      +++++ L+I    QV ++  I E      K +G +                
Sbjct: 428 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKD 486

Query: 219 ---------------ITGSSSGPSKSFA------ADFGGKFVSEGGDFSVKGVLDRFSFE 257
                          I GS + P+   +       D G K  + G    +  + D    +
Sbjct: 487 GNIGIKDEDGMNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSG--IGIGFITDNIILD 544

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
             L A+E+      +++P +     ++A    G +  Y+  SSS   ++ +  +  + L 
Sbjct: 545 LQLSAMEKTGNGEIVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLE 603

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP +    RI + ++     P        +P     + +  + +  G TIV+ G+  ++
Sbjct: 604 VTPQITPDNRIIVEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNE 663

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
             +  E +P L ++P LG LFR       + E+ +  TP ++   A+
Sbjct: 664 QSKSVEKVPFLGELPYLGRLFRRDTVTDRKNELLVFLTPRIMNNQAI 710


>gi|257485358|ref|ZP_05639399.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 341

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 103/262 (39%), Gaps = 19/262 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             QV ++  I EV       +G Q  +     +SG + +     G +     G  ++   
Sbjct: 67  PLQVQIETRILEVSLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 126

Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTV 298
              F      + +  L ALE     + L+ P+L  ++ Q A    G              
Sbjct: 127 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 186

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRK 355
           S++T  +SV     GV+L   P +   G + + IQ +VS         D    P    R 
Sbjct: 187 STNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRS 246

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V   SG T++L GL+K D  +    +P L +IP L  LF ++  ++  TE+ +  T
Sbjct: 247 VATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLIT 306

Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437
           P ++   +     +  D Y  +
Sbjct: 307 PRVI--TSSSQARQVTDDYRQQ 326


>gi|294146464|ref|YP_003559130.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
 gi|292676881|dbj|BAI98398.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
          Length = 385

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 120/258 (46%), Gaps = 17/258 (6%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEG---- 242
           +  AGE  V + V  A V    LK +GF  S ++G   G   S ++     F  +G    
Sbjct: 92  IVRAGEQVVAVDVQFAAVSATTLKALGFNFSKLSGDIQGAIVSPSSLGSASFNPDGLALE 151

Query: 243 ------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                   F++           VL AL      + LA+PTL   SG+ ASF +GG+    
Sbjct: 152 ASAPIQNAFNLFLSAPNRGIGAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEFPVP 211

Query: 297 T--VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPS 350
              VS S    S+   ++GV L  TP VLS   I L+I  EVS       + +    +P 
Sbjct: 212 VPQVSGSGNTLSIQYKEFGVRLSVTPFVLSKDHIVLKIAPEVSELDYNNGVQLQGYVVPG 271

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            R R A+TTVEL SG + V+AGL        KE  PL   IP+LGA F+  +  +E+ E+
Sbjct: 272 LRRRSAETTVELGSGQSFVIAGLSYSSQTVTKEKTPLFGDIPVLGAFFKRQQNQKEKQEL 331

Query: 411 FIAATPFLVKPVAMRDLS 428
            I ATP LV P+   ++ 
Sbjct: 332 IIVATPRLVGPMKPEEVP 349


>gi|319761377|ref|YP_004125314.1| general secretion pathway protein d [Alicycliphilus denitrificans
           BC]
 gi|317115938|gb|ADU98426.1| general secretion pathway protein D [Alicycliphilus denitrificans
           BC]
          Length = 767

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 115/278 (41%), Gaps = 15/278 (5%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L G VR + D +R   L     ++  R + A     K           QV ++ +I EV 
Sbjct: 449 LEGNVRVVADDKRNALLIRAPRAEYRRIEQALRELDK--------APTQVLIEASIVEVS 500

Query: 207 RDILKQIGFQHSITGSSSGPSKS---FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
                + G +  I  S SG          +  G    +   FS   +    +    L+AL
Sbjct: 501 LTGNLKYGVEWFIQNSLSGDRTGQALLNMNNSGSIGPQQPGFSYTILNKAGAVRATLNAL 560

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFT 319
              + +R L+ P++  +   SA+   G Q   K  ++ T       S+   D GV+L  T
Sbjct: 561 AANSQLRVLSNPSVLVLDNHSATILVGKQQPIKQSTTVTTGNLVTESIVYKDTGVMLSVT 620

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P+V + G + L I  +V++      A    S+  R+  + V + SG  IVL G++ ++  
Sbjct: 621 PSVNAGGLVTLDINQQVTDVGDVDAATGQRSFLTRQIQSRVAVRSGDPIVLGGVMSENQS 680

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
               G+P L  +P+LGALF         TE+ +  TP 
Sbjct: 681 TGNSGVPGLRDVPVLGALFSTDTTTSARTELLVVLTPR 718


>gi|293406579|ref|ZP_06650505.1| hypothetical protein ECGG_01885 [Escherichia coli FVEC1412]
 gi|291426585|gb|EFE99617.1| hypothetical protein ECGG_01885 [Escherichia coli FVEC1412]
          Length = 679

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 368 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 427

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625


>gi|150260167|ref|ZP_01916895.1| general secretion pathway protein D [Yersinia pestis CA88-4125]
 gi|165925049|ref|ZP_02220881.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937283|ref|ZP_02225847.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|167419065|ref|ZP_02310818.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167466632|ref|ZP_02331336.1| general secretion pathway protein D [Yersinia pestis FV-1]
 gi|218927995|ref|YP_002345870.1| general secretion pathway protein D [Yersinia pestis CO92]
 gi|229840719|ref|ZP_04460878.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842725|ref|ZP_04462879.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|115346606|emb|CAL19488.1| general secretion pathway protein D [Yersinia pestis CO92]
 gi|149289575|gb|EDM39652.1| general secretion pathway protein D [Yersinia pestis CA88-4125]
 gi|165914757|gb|EDR33370.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923249|gb|EDR40400.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166963059|gb|EDR59080.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|229690205|gb|EEO82260.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697085|gb|EEO87132.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. PEXU2]
          Length = 640

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 98/249 (39%), Gaps = 14/249 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKF 238
           +V+  L+I    QV ++  I E +      +G +     S   +    S     + G   
Sbjct: 336 EVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNSDGLLNNNGWGI 394

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     +      + +++ +L AL   T    LA P++  +    A F  G +      
Sbjct: 395 ATTITGLTAG--FYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNVGQEVPVLIS 452

Query: 299 SSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSY 351
           + +T       S++    GV+L   P +     + L I+ EVS                +
Sbjct: 453 TQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVF 512

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R  +  V + SG T+V+ GLL      +   +P L  +P++G LFR ++   E++ + 
Sbjct: 513 NKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLI 572

Query: 412 IAATPFLVK 420
           +   P +++
Sbjct: 573 LFIKPTILR 581


>gi|329120652|ref|ZP_08249315.1| type IV pilus biogenesis protein PilQ [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327460876|gb|EGF07210.1| type IV pilus biogenesis protein PilQ [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 695

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 105/267 (39%), Gaps = 29/267 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224
           +K++  L++    QV ++  I E      ++IG +    GS+                  
Sbjct: 426 EKILEELDVP-ARQVMVETRIVEASDGFSREIGVKFGYAGSNGKNSWGSNWANAQANNNT 484

Query: 225 ---------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                      + +   +      +     ++   L   +    L A +     + ++ P
Sbjct: 485 NVNASQNNTNRTWTLNPNINLPTTAATSSVALVHALSSGALALELSAQQAQNKAKVISSP 544

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +     + A   SG +  Y+  SSS   ++ +     + +  TP +   G+I + I+  
Sbjct: 545 RVLTQDRKEAVIESGTEVPYQEASSSGATST-SFKKAVLGMTVTPQITPDGQIIMDIKVN 603

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                    A + P    ++ DT   + +GGT++L G+ +++  +    +PLL  IP++G
Sbjct: 604 KDSVNRNCGASE-PCIDTKRLDTKAMVENGGTLILGGIYEEENSEGVSKVPLLGDIPVVG 662

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPV 422
            LF++   N  + E+ I  TP +V  V
Sbjct: 663 NLFKSRSRNTSKKELLIFITPRIVDNV 689


>gi|222109862|ref|YP_002552126.1| general secretion pathway protein d [Acidovorax ebreus TPSY]
 gi|221729306|gb|ACM32126.1| general secretion pathway protein D [Acidovorax ebreus TPSY]
          Length = 781

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 109/284 (38%), Gaps = 35/284 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+     QV ++  I EV  + + + G Q      + G +     +        
Sbjct: 423 RAVIDKLD-GRRAQVLIESLIVEVSANKVAEFGIQWQGVLGNYGSTLGVLGNNSSVAGRN 481

Query: 242 GGDFSVKGVLDRFS------------------------FETVLHALERATAIRTLAEPTL 277
             D ++       +                           + + LE       L+ P L
Sbjct: 482 ILDLALAAATGNVTSIASAKPAAGMNLAVAPRINGKYYLGALANFLENTGDANVLSTPNL 541

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRI 328
             +  + A    G    + T S +            T+V   D G++L   P +   G +
Sbjct: 542 LTLDNEEAQIIIGNNVPFVTGSYANTGGSGGAVNPFTTVERKDVGLMLRVRPQINENGTV 601

Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            L +  EVS+      +  + PS   R  ++TV +  G  IV+ GLL+D+    ++ +P+
Sbjct: 602 KLTMYQEVSKVAESTLSNANGPSTSKRSIESTVLVDDGSVIVIGGLLEDNYALNQDKVPV 661

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +  +P++G LFRN +  R++T + +   P +++  A  D    D
Sbjct: 662 MGDLPVVGGLFRNEKRTRQKTNLMVFLRPMVIRDSAASDALMVD 705


>gi|254482717|ref|ZP_05095955.1| type IV pilus secretin PilQ subfamily, putative [marine gamma
           proteobacterium HTCC2148]
 gi|214037076|gb|EEB77745.1| type IV pilus secretin PilQ subfamily, putative [marine gamma
           proteobacterium HTCC2148]
          Length = 692

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 120/326 (36%), Gaps = 47/326 (14%)

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L +  ++    +     +VV+     ++  +  A +L+E                ++++ 
Sbjct: 381 LFQAGSEDGGSLISQRGSVVVDARTNSLIITDTAAKLAEI---------------RELIE 425

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------- 237
            ++I    QV ++  I   + D+   +G +              +A    +         
Sbjct: 426 QVDIP-VRQVMIESRIVIAQSDLTHSLGIEWGGGYIDDVNGNILSASGDAQNVIGLNNSI 484

Query: 238 ------------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                              V+    F++    +       + ALE A     +++P +  
Sbjct: 485 INGETPSVSYPGALLVDLGVASTSGFALGFTSNDLFLTAEISALEAAGQGEVVSQPKVIT 544

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
              Q A+  SG +  Y+  ++S GATS +  +  + L  TP +    R+ L +  +    
Sbjct: 545 GDKQQATIKSGTEIPYQEAAAS-GATSTSFKEAVLELEVTPNITPDDRVMLDLNVKQDSV 603

Query: 340 ---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
              V     G +PS    +  T V + +G T+VL G+ K +  +    +P    +P +GA
Sbjct: 604 GDLVPSGQGGFIPSIDTTEITTQVLVGNGETVVLGGVFKTEDLETVNKVPFFGDLPYVGA 663

Query: 397 LFRNSRFNREETEIFIAATPFLVKPV 422
            FR+   N  +TE  I  TP ++   
Sbjct: 664 FFRSESRNNTKTETLIFITPRILADT 689


>gi|146294651|ref|YP_001185075.1| general secretion pathway protein D [Shewanella putrefaciens CN-32]
 gi|145566341|gb|ABP77276.1| general secretion pathway protein D [Shewanella putrefaciens CN-32]
          Length = 703

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 110/282 (39%), Gaps = 45/282 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394

Query: 236 -------GKFVSEGGDFSVKGV------------------------LDRFSFETVLHALE 264
                  G +++      V G                         +    F  ++ A+ 
Sbjct: 395 WQAQDKEGTYITNPSTGEVIGKNPDTQGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVS 454

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFT 319
             T    LA P++T +  Q ASF  G +    T S+++        +V   + GV L   
Sbjct: 455 SDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 514

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL GL+ +++Q
Sbjct: 515 PQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEVQ 572

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  + +P L  IP+LG LF++S   + +  + I   P +++ 
Sbjct: 573 ESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIRD 614


>gi|30248714|ref|NP_840784.1| general (type II) secretion pathway (GSP) D protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30180309|emb|CAD84616.1| General (type II) secretion pathway (GSP) D protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 697

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 146/379 (38%), Gaps = 23/379 (6%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + +  NK  +  +   ++ +        DV     + ++++    G A  ++        
Sbjct: 299 LGVAQNKSDLELLREWIERL--------DVSKLGAQRIFVYNVQNGNAKDLVAPLRQVLT 350

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
             +             +              +S    + G    +       E +     
Sbjct: 351 GEMQATTASGTTVSPTSTPMSTPQMPAAAPSLSAEPSISGSQTNVGRLVAIEENNSLMFY 410

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
            +         + K +++L      QV ++  +AEV  +   + G Q      S   + +
Sbjct: 411 GTEDEFRVIQEALKQIDVL----PRQVMIEAFLAEVTLNNNLRYGVQWFF--DSGENTVT 464

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            +A   G   S+   FS      + +   VL+AL+  T ++ L+ P ++ ++ Q AS   
Sbjct: 465 LSATDVGSVASQFPGFSYI-YAGKANARIVLNALQSKTEVKILSAPKISVLNNQKASLQV 523

Query: 290 GGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           G Q    T +S            ++   D GV+L   P V   G + L +  EVSE    
Sbjct: 524 GDQVPIVTQTSQGTVVSGAPVINTIQMRDTGVILEVIPRVNDNGNVILDVTQEVSEVAQT 583

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            ++G D P+ + RK  + +    G T+ L GL++++      G+PL+  +P++G LF+++
Sbjct: 584 TSSGIDSPTIQRRKIHSVIATRDGFTVALGGLIRENGSAGNSGVPLIKDVPVIGNLFKSN 643

Query: 402 RFNREETEIFIAATPFLVK 420
             +   TE+ +   P +++
Sbjct: 644 TSDIRRTELVVLLVPHVMR 662


>gi|323978963|gb|EGB74043.1| general secretion pathway protein D [Escherichia coli TW10509]
          Length = 686

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G   +    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATIINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|264676808|ref|YP_003276714.1| type IV pilus secretin PilQ [Comamonas testosteroni CNB-2]
 gi|262207320|gb|ACY31418.1| type IV pilus secretin PilQ [Comamonas testosteroni CNB-2]
          Length = 704

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 99/249 (39%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGKF 238
            QV ++  I E R    + +G +                    SSSG S  F +      
Sbjct: 451 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSSSGASTKFPSGNFVNL 510

Query: 239 VSEGGDFSVKGVLDRFSFET--------VLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            +     +  G +    F +         L ALE     + ++ P L       A    G
Sbjct: 511 PASVSGVNTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 570

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            ++ Y +V++  GAT+++     + L  TP +   G I L +  +V++   G       +
Sbjct: 571 TEYPY-SVTAPNGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 627

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+ + +       +PL   +P+LG LFR++     + E+
Sbjct: 628 IDTKHVKTQVLVENGGTVVIGGIFELEETNQLNKVPLFGDLPVLGHLFRSNTKASSKREM 687

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 688 LVFITPKML 696


>gi|308272047|emb|CBX28655.1| hypothetical protein N47_G39790 [uncultured Desulfobacterium sp.]
          Length = 667

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 102/240 (42%), Gaps = 12/240 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK--GV 250
             QV ++  IA++       +G   +I   + G S +          S      ++  G 
Sbjct: 379 PRQVMIEGMIAQIDLKDDLSLGLAWAINTKNFGGSPANITFNANGLTSATSSTGLRFIGT 438

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----- 305
               +   V+ ALE  +  + LA P +     + A+   G Q    T S+   +T     
Sbjct: 439 DSGDAVRAVVTALESQSRGKLLAAPHILVSDNREATIQVGQQVPIVTSSTLATSTQAAQQ 498

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTV 360
           ++   D G++L   P V   G + L I+ EVS          V + +       +  T +
Sbjct: 499 TIQYKDIGIILKVKPQVNDSGLVSLEIKQEVSSFSSLSSADTVTSNEDILINKTEVSTNL 558

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G TI++ GL+++D  + + GIP L KIPILG LF  +    + TE+ I  TP +VK
Sbjct: 559 VVQDGHTIIIGGLIREDKSKSRTGIPWLVKIPILGFLFGGTNDTNKRTELIILLTPHVVK 618


>gi|166713403|ref|ZP_02244610.1| general secretion pathway protein D [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 766

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 77/318 (24%), Positives = 128/318 (40%), Gaps = 33/318 (10%)

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            +    +   V   +    AV  + T L +S    +A  S + V+  L++    QV ++ 
Sbjct: 432 SNGNGAVTLEVEGDKVGVSAVAETNTLLVRSTPQSWA--SIRDVIEKLDVM-PMQVHIEA 488

Query: 201 TIAEVRRDILKQIGFQHSI---------TGSSSGPSKSFAA--DFGGKFVSEGGDFSVKG 249
            +AEV      Q G                 + GP+   AA  +  G       +  V  
Sbjct: 489 QVAEVNLTGQLQYGVNWYFENAVTTPFDANDNGGPALPSAAGRNIWGDIAGSVTNTGVGW 548

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ 303
                +   ++ AL++ T +R L  P++   +   A+   G +    + S +TG      
Sbjct: 549 TFLGKNAAAIISALDQVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSS 608

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------------MPSY 351
            +SV   D GV+L   P V   G + L I  E+S P    +A                  
Sbjct: 609 FSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEISTPGARPDACTAATTTTVNSAACNVDI 668

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+  T   + SG TI+LAGL+ D       G+P+LSK+P++GALF     +    E+ 
Sbjct: 669 NTRRVKTEAAVQSGDTIMLAGLIDDSTTDGSSGVPMLSKLPVVGALFGRKTRDTRRREVI 728

Query: 412 IAATPFLVK-PVAMRDLS 428
           +  TP +V+ P   R+L+
Sbjct: 729 VLITPSIVRNPQEARNLT 746


>gi|167044898|gb|ABZ09565.1| putative bacterial type II and III secretion system protein
           [uncultured marine crenarchaeote HF4000_APKG8D22]
          Length = 637

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/336 (20%), Positives = 136/336 (40%), Gaps = 46/336 (13%)

Query: 104 HDGKQMLNLDILIER-DIAHLEM---TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            D + ++   + +   DI  L      L+    D+ I ++  ++T++L+           
Sbjct: 327 RDSEDLVTEVVRVNHADITELSTSLNALKSARKDALITIDTRTNTLILN------DLRHH 380

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
             ++ ET                  + +L+I+   QV ++  I E+ +   +++G    +
Sbjct: 381 VDDMLET------------------IKILDISTP-QVLIEAKIVEISKTFSQELGISWGL 421

Query: 220 TGSSSG-PSKSFAADFGGKFVS-------------EGGDFSVKGVL-DRFSFETVLHALE 264
                G P+ +  + F  +F+               G D  ++G L    +    L ALE
Sbjct: 422 VNPEPGFPTVTGNSTFDTQFLVDLRPTVDIATGNVAGFDSLIQGFLPGNIALNVRLEALE 481

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           ++   R ++ P +T    + A   SG    Y+   +S    S+   +  + L  TP V S
Sbjct: 482 KSGKGRVISSPRVTTADNKEARVLSGRDIPYQV--NSVEGNSIQFVNAELSLTVTPHVTS 539

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              I + I    +       A  +P+   ++  T V + +G T VLAG+ +    + K+ 
Sbjct: 540 DNSIYMTIDATKNAADFAQLAAGIPTITRKEMHTEVLVGNGETTVLAGIYESTSTENKKA 599

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P  SK+P++G LFR         E+ +  TP +V+
Sbjct: 600 VPWFSKLPLVGFLFRAFDDKDTINELLVFITPTIVE 635


>gi|220936186|ref|YP_002515085.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997496|gb|ACL74098.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. HL-EbGR7]
          Length = 711

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 113/267 (42%), Gaps = 26/267 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFA-ADFGGK-- 237
           +++++ L+I    QV ++  I     D  + +G +  +TG   +G +++F   +  G   
Sbjct: 447 RRLIDRLDIP-VQQVLIETRIVIASDDFARDLGARFGVTGVGQTGRTQTFTTGNLSGTTE 505

Query: 238 -------------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                                   G  ++  +      +  + AL+       ++ P + 
Sbjct: 506 MIRGDELSLLNRLNTNLPVISPSAGSIALSILRPDVLLDLEISALQVEGRGEIISSPRVI 565

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
             +GQ+A    G +  Y+  +SS GAT+V   +  +    TP +   G I L I+     
Sbjct: 566 TANGQTARIQQGERIPYQEATSS-GATAVQFIEAVLATEVTPQITPNGNIILNIRVNKDN 624

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           P   V  G  PS   R+ +T V + +G T+VL G+ + D  +  E +P    +P +  LF
Sbjct: 625 PGTLVVQGT-PSIETREVETQVFVRNGETVVLGGVYEIDSLETLEKVPFFGDLPGIRHLF 683

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMR 425
           R +  +  + E+ I  TP +++  A+ 
Sbjct: 684 RRTGKSTRKAELLIFVTPKVIEETALN 710


>gi|299529630|ref|ZP_07043067.1| type IV pilus secretin PilQ [Comamonas testosteroni S44]
 gi|298722493|gb|EFI63413.1| type IV pilus secretin PilQ [Comamonas testosteroni S44]
          Length = 704

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-----------------------SSSGPSKSF 230
            QV ++  I E R    + +G +                              SG   + 
Sbjct: 451 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSSSGSSSKFPSGNFVNL 510

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A   G        FSV            L ALE     + ++ P L       A    G
Sbjct: 511 PASVSGINTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 570

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            ++ Y +V++  GAT+++     + L  TP +   G I L +  +V++   G       +
Sbjct: 571 TEYPY-SVTAPNGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 627

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+ + +       +PL   +P+LG LFR++     + E+
Sbjct: 628 IDTKHVKTQVLVENGGTVVIGGIFELEETNQLNKVPLFGDLPVLGHLFRSNTKASSKREM 687

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 688 LVFITPKML 696


>gi|262192447|ref|ZP_06050599.1| general secretion pathway protein D [Vibrio cholerae CT 5369-93]
 gi|262031711|gb|EEY50297.1| general secretion pathway protein D [Vibrio cholerae CT 5369-93]
          Length = 707

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 21/254 (8%)

Query: 175 QYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFA 231
           Q   +  ++++ LL        QV L+ T+AEV+ +    +G + +IT G  +G S    
Sbjct: 439 QGQYADYQRLIELLKFVDQRPRQVLLQATVAEVKVEDGFTLGTEFNITSGDITGGSNGLI 498

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           A+         G+ ++ GV           A   +   + L+ P + A+  + A  + G 
Sbjct: 499 AN--------AGNLNLNGVFG--DVTAKFTAALDSGKAQVLSSPRVIAMDQEPARISIGE 548

Query: 292 QHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           Q   KT   S G        +    D G+ L  TPT+   G + L I  EVS    GV  
Sbjct: 549 QIQVKTGEVSGGGDDSKATVTYQYVDVGITLDITPTINQNGLVELSISQEVS--SQGVIT 606

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           GD      R   T +   SG TI + GL+  D    +  +P+L  IP++G LF+     +
Sbjct: 607 GDSIPINKRSLQTRMLADSGDTIYMGGLISKDNNNSENKVPILGDIPLIGNLFKYRVEKQ 666

Query: 406 EETEIFIAATPFLV 419
             TE+ +  TP+++
Sbjct: 667 NSTELVLLITPYVI 680


>gi|22127080|ref|NP_670503.1| general secretion pathway protein D [Yersinia pestis KIM 10]
 gi|45442607|ref|NP_994146.1| general secretion pathway protein D [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806450|ref|YP_650366.1| general secretion pathway protein D [Yersinia pestis Antiqua]
 gi|108813180|ref|YP_648947.1| general secretion pathway protein D [Yersinia pestis Nepal516]
 gi|145597997|ref|YP_001162073.1| general secretion pathway protein D [Yersinia pestis Pestoides F]
 gi|153949658|ref|YP_001399937.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
           31758]
 gi|162421010|ref|YP_001607617.1| general secretion pathway protein D [Yersinia pestis Angola]
 gi|166010333|ref|ZP_02231231.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212712|ref|ZP_02238747.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399809|ref|ZP_02305327.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167425419|ref|ZP_02317172.1| general secretion pathway protein D [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229837688|ref|ZP_04457848.1| general secretion pathway protein D [Yersinia pestis Pestoides A]
 gi|229903625|ref|ZP_04518738.1| general secretion pathway protein D [Yersinia pestis Nepal516]
 gi|270487407|ref|ZP_06204481.1| general secretion pathway protein D [Yersinia pestis KIM D27]
 gi|294503003|ref|YP_003567065.1| general secretion protein [Yersinia pestis Z176003]
 gi|21960134|gb|AAM86754.1|AE013921_5 putative general secretion protein [Yersinia pestis KIM 10]
 gi|45437472|gb|AAS63023.1| putative general secretion protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108776828|gb|ABG19347.1| general secretion pathway protein D [Yersinia pestis Nepal516]
 gi|108778363|gb|ABG12421.1| general secretion pathway protein D [Yersinia pestis Antiqua]
 gi|145209693|gb|ABP39100.1| general secretion pathway protein D [Yersinia pestis Pestoides F]
 gi|152961153|gb|ABS48614.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
           31758]
 gi|162353825|gb|ABX87773.1| general secretion pathway protein D [Yersinia pestis Angola]
 gi|165990819|gb|EDR43120.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206004|gb|EDR50484.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167050517|gb|EDR61925.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055819|gb|EDR65603.1| general secretion pathway protein D [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229679395|gb|EEO75498.1| general secretion pathway protein D [Yersinia pestis Nepal516]
 gi|229704065|gb|EEO91077.1| general secretion pathway protein D [Yersinia pestis Pestoides A]
 gi|262361038|gb|ACY57759.1| general secretion protein [Yersinia pestis D106004]
 gi|262364982|gb|ACY61539.1| general secretion protein [Yersinia pestis D182038]
 gi|270335911|gb|EFA46688.1| general secretion pathway protein D [Yersinia pestis KIM D27]
 gi|294353462|gb|ADE63803.1| general secretion protein [Yersinia pestis Z176003]
 gi|320014111|gb|ADV97682.1| general secretion pathway protein D [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 640

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 98/249 (39%), Gaps = 14/249 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKF 238
           +V+  L+I    QV ++  I E +      +G +     S   +    S     + G   
Sbjct: 336 EVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNSDGLLNNNGWGI 394

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     +      + +++ +L AL   T    LA P++  +    A F  G +      
Sbjct: 395 ATTITGLTAG--FYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNVGQEVPVLIS 452

Query: 299 SSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSY 351
           + +T       S++    GV+L   P +     + L I+ EVS                +
Sbjct: 453 TQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVF 512

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R  +  V + SG T+V+ GLL      +   +P L  +P++G LFR ++   E++ + 
Sbjct: 513 NKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLI 572

Query: 412 IAATPFLVK 420
           +   P +++
Sbjct: 573 LFIKPTILR 581


>gi|262273168|ref|ZP_06050984.1| type II secretory pathway component EpsD [Grimontia hollisae CIP
           101886]
 gi|262222746|gb|EEY74055.1| type II secretory pathway component EpsD [Grimontia hollisae CIP
           101886]
          Length = 671

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 105/283 (37%), Gaps = 44/283 (15%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + + V+  L+I    QV ++  I E+       +G Q            +          
Sbjct: 331 ALEGVIAQLDIR-RAQVLIEAMIVEMSESDGANLGIQWGSLDGGGIQFGNTGVPITNYLA 389

Query: 240 SE-------------------------------------GGDFSVKGVLDRFSFETVLHA 262
           ++                                     GG   +   +    +  ++ A
Sbjct: 390 AQEKAKDKTTTETRFDRDNIPVEVPITESGDPTAIAEVLGGVSGLAAGVVLGDWTALVTA 449

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317
           +   +    L+ P+L  +  + ASF  G +    T S++         +V   D GV L 
Sbjct: 450 VSSNSDSNILSSPSLMVLDNEEASFIVGEEVPVVTGSTTGSNNDNPFQTVERKDVGVKLK 509

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP +     + L I+ E+S  +    A D+  +  R+  T+V       IVL+GL+ + 
Sbjct: 510 ITPQINEGDSVQLNIEQEISNVLGASGAVDI-RFGKRQLTTSVLAADQQMIVLSGLIDEQ 568

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             + ++ +PLL  IP+LG LF+++   + +  + +   P +++
Sbjct: 569 TNESEQKVPLLGDIPLLGHLFKSTSSGKTKRNLMLFIKPTIIR 611


>gi|296113651|ref|YP_003627589.1| type IV pilus secretin PilQ [Moraxella catarrhalis RH4]
 gi|295921345|gb|ADG61696.1| type IV pilus secretin PilQ [Moraxella catarrhalis RH4]
 gi|326566933|gb|EGE17071.1| type IV pilus secretin PilQ [Moraxella catarrhalis 12P80B1]
 gi|326568865|gb|EGE18935.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC8]
          Length = 473

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 29/299 (9%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           T  + G + + + +    + + T + Q      AN   K ++  ++I   +QV ++  I 
Sbjct: 182 TTAVRGTLLSERGTVTVDKRTNTLIIQDVPASVAN--IKALIERIDIP-VEQVMIEARIV 238

Query: 204 EVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGG--------DFSVKGVL 251
               +  +++G      G +     G S+        + V+ GG        D  V   +
Sbjct: 239 SANENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAM 298

Query: 252 DRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            R +F          +  L A++       ++ P +     Q+A  +SG Q  Y+  + S
Sbjct: 299 GRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHS 358

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            GA++    +  ++L  TP +   G+IGL++  +   PV  +      + +    +T V 
Sbjct: 359 -GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL---GHIAIQEDAIETNVI 414

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ I  TP LV+
Sbjct: 415 IEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473


>gi|78064721|ref|YP_367490.1| type II and III secretion system protein [Burkholderia sp. 383]
 gi|77965466|gb|ABB06846.1| type II and III secretion system protein [Burkholderia sp. 383]
          Length = 781

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 124/348 (35%), Gaps = 56/348 (16%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G         +A   + + +  +    Y N   + V++ L+ A   QV ++  I E+  
Sbjct: 367 SGDDNQQGGMIQADAATNSLIITASDPVYRN--LRSVIDQLD-ARRAQVYIEALIVELAS 423

Query: 208 DILKQIGFQHSITGSS--SGPSKSFAADFGGKFV--SEGGDFSVKGVLDRFSFETVLHAL 263
           +    +G Q  +       G + +  A  G   +  + GG  +  G +        L +L
Sbjct: 424 NTQGNLGIQWQVASGQFLGGTNLNPTAGLGNSIINLTAGGVTNAAGGITGGGLAANLGSL 483

Query: 264 ERA-------------------------TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +                          +    L+ P L  +  + A    G      T 
Sbjct: 484 TQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIATG 543

Query: 299 S--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMP 349
           S        ++    +    D G+ LH  P +   G + L++ TE S  V G  +    P
Sbjct: 544 SYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVAGTTSAQTGP 603

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R   +T+   +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R +T 
Sbjct: 604 TFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKIRAKTN 663

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           + +   P ++               S    A+    NR + I G   A
Sbjct: 664 LMVFLRPVII---------------SDRSTAQEVTSNRYDYIQGVTGA 696


>gi|152985006|ref|YP_001347404.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
 gi|150960164|gb|ABR82189.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
          Length = 658

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 21/261 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ + ++  L++    QV ++  I E+  DI   +G Q +I     G +++   + G   
Sbjct: 345 NALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTRTSFGNTGLSI 403

Query: 239 VSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            +                     +   SF  ++ AL   +    L+ P+L  +  Q A  
Sbjct: 404 GTLLQALKDDKIPNPLPDGAVVGIGSSSFGALVTALSANSKSNLLSTPSLLTLDNQKAEI 463

Query: 288 TSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
             G    + T S +T +       T+V   D GV L  TP +     + L I+ E+S   
Sbjct: 464 LVGQNVPFNTGSYTTNSEGSSNPFTTVERKDIGVNLKVTPHINDGAALRLEIEQEISSIA 523

Query: 341 IGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             V   +        R   +T+   +G  IVL GL++DD+ Q +  +PLL  IP LG LF
Sbjct: 524 PNVQQVSDTDIITNKRSIKSTILAENGQVIVLGGLIQDDVVQAESKVPLLGDIPWLGRLF 583

Query: 399 RNSRFNREETEIFIAATPFLV 419
           R+++    +  + +   P +V
Sbjct: 584 RSTKDTHTKRNLMVFLRPTVV 604


>gi|51597379|ref|YP_071570.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
           32953]
 gi|186896487|ref|YP_001873599.1| general secretion pathway protein D [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590661|emb|CAH22303.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
           32953]
 gi|186699513|gb|ACC90142.1| general secretion pathway protein D [Yersinia pseudotuberculosis
           PB1/+]
          Length = 640

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 98/249 (39%), Gaps = 14/249 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKF 238
           +V+  L+I    QV ++  I E +      +G +     S   +    S     + G   
Sbjct: 336 EVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNSDGLLNNNGWGI 394

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     +      + +++ +L AL   T    LA P++  +    A F  G +      
Sbjct: 395 ATTITGLTAG--FYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNVGQEVPVLIS 452

Query: 299 SSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSY 351
           + +T       S++    GV+L   P +     + L I+ EVS                +
Sbjct: 453 TQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVF 512

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R  +  V + SG T+V+ GLL      +   +P L  +P++G LFR ++   E++ + 
Sbjct: 513 NKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLI 572

Query: 412 IAATPFLVK 420
           +   P +++
Sbjct: 573 LFIKPTILR 581


>gi|170731436|ref|YP_001763383.1| general secretion pathway protein D [Burkholderia cenocepacia
           MC0-3]
 gi|169814678|gb|ACA89261.1| general secretion pathway protein D [Burkholderia cenocepacia
           MC0-3]
          Length = 780

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 121/348 (34%), Gaps = 56/348 (16%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G         +A   + + +  +    Y N   + V++ L+ A   QV ++  I E+  
Sbjct: 366 SGDDNQPGGMIQADSATNSLIITASDPVYRN--LRSVIDQLD-ARRAQVYIEALIVELNS 422

Query: 208 DILKQIGFQHSIT------GSSSGPSKSFAADF----------------GGKFVSEGGDF 245
                +G Q  +       G++  P                        GG   S  G  
Sbjct: 423 TTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSIINLTAGGVANAAGGITGGGLASNLGQL 482

Query: 246 S-------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           S       +  +        +L      +    L+ P L  +  + A    G      T 
Sbjct: 483 SQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATG 542

Query: 299 SSSTGATSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMP 349
           S S   +  T          D G+ LH  P +   G + L++ TE S  V G  NA   P
Sbjct: 543 SYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTNAQTGP 602

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R   +T+   +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R +T 
Sbjct: 603 TFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTN 662

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           + +   P ++               S    A+    NR + I G   A
Sbjct: 663 LMVFLRPVII---------------SDRSTAQEVTANRYDYIQGVTGA 695


>gi|296159579|ref|ZP_06842403.1| type IV pilus secretin PilQ [Burkholderia sp. Ch1-1]
 gi|295890287|gb|EFG70081.1| type IV pilus secretin PilQ [Burkholderia sp. Ch1-1]
          Length = 585

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 11/238 (4%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------GKFVSEG 242
               QV ++  I E      + +G + S+  S++  +     D            F +  
Sbjct: 349 RPTRQVLIEARIVEGEHGFSRNLGVKLSMAASNADGTAKGLTDAAYDLSARPIAGFDAAT 408

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
              ++            L ALE       ++ P +       A    G +  Y+      
Sbjct: 409 AGLTLFAAGATRLLNIELSALEAQGRGEIVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQ 467

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           G + V      + L   P ++  GR+ L +           +AG  P+   +   T VE+
Sbjct: 468 GVSGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGEQTDAG--PAINTKHVQTRVEV 525

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             GGT+ + G+   D +     +PLL KIP+LGALFR+       +E+ +  TP +V+
Sbjct: 526 EDGGTVSIGGIYATDDRDDVTQVPLLGKIPVLGALFRHRAHRDRRSELAVFITPRVVQ 583


>gi|326560015|gb|EGE10410.1| type IV pilus secretin PilQ [Moraxella catarrhalis 46P47B1]
          Length = 473

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 29/299 (9%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           T  + G + + + +    + + T + Q      AN   K ++  ++I   +QV ++  I 
Sbjct: 182 TTAVRGTLLSERGTVTVDKRTNTLIIQDVPASVAN--IKALIERIDIP-VEQVMIEARIV 238

Query: 204 EVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGG--------DFSVKGVL 251
               +  +++G      G +     G S+        + V+ GG        D  V   +
Sbjct: 239 SANENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAM 298

Query: 252 DRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            R +F          +  L A++       ++ P +     Q+A  +SG Q  Y+  + S
Sbjct: 299 GRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHS 358

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            GA++    +  ++L  TP +   G+IGL++  +   PV  +      + +    +T V 
Sbjct: 359 -GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL---GHIAIQEDAIETNVI 414

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ I  TP LV+
Sbjct: 415 IEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473


>gi|254246658|ref|ZP_04939979.1| GspD [Burkholderia cenocepacia PC184]
 gi|124871434|gb|EAY63150.1| GspD [Burkholderia cenocepacia PC184]
          Length = 775

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 112/314 (35%), Gaps = 54/314 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------GSSSGPSKSFAADF- 234
           + V++ L+ A   QV ++  I E+       +G Q  +       G++  P         
Sbjct: 398 RSVIDQLD-ARRAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSII 456

Query: 235 ---------------GGKFVSEGGDFS-------VKGVLDRFSFETVLHALERATAIRTL 272
                          GG   S  G  S       +  +        +L      +    L
Sbjct: 457 NLTAGGVANAAGGITGGGLASNLGQLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVL 516

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLS 324
           + P L  +  + A    G      T S S   +  T          D G+ LH  P +  
Sbjct: 517 STPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITD 576

Query: 325 PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G + L++ TE S  V G  NA   P++  R   +T+   +G  IVL GL++D+ Q    
Sbjct: 577 GGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNS 636

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +PLL  IP +G LFR+    R +T + +   P ++               S    A+  
Sbjct: 637 KVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVII---------------SDRSTAQEV 681

Query: 444 FFNRVNKIYGPKEA 457
             NR + I G   A
Sbjct: 682 TANRYDYIQGVTGA 695


>gi|262280337|ref|ZP_06058121.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
 gi|262258115|gb|EEY76849.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
          Length = 717

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 104/276 (37%), Gaps = 33/276 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           +K+++LL++    QV ++  I        K++G +  I       + S            
Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGVNSNNSLLVGGSDTTLWN 501

Query: 231 ------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                               D G               +  F  +  L AL+       +
Sbjct: 502 LREPDDKGKYTIERPDNLNVDLGVTSTGASSIAFSLISMSDFMLDLELSALQADGYGEVI 561

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGL 330
           + P +     Q A   +G Q  Y+T ++S   ++   +  D  + L  TP++   G+I +
Sbjct: 562 STPKVMTADKQRARVATGQQVPYQTTTNSAAGSTATTSFKDALLSLDVTPSITPDGKIQM 621

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           ++             G++      + +T V + +G T++L G+ +      +  +P L  
Sbjct: 622 KLDISKDSVADSAPNGEL-ILNKNQINTNVLVNNGETVILGGVFEQATSNSQTKVPFLGD 680

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +P++G LFR    + ++ E+ I  TP +V    +R+
Sbjct: 681 LPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRN 716


>gi|254281904|ref|ZP_04956872.1| fimbrial assembly protein PilQ, putative [gamma proteobacterium
           NOR51-B]
 gi|219678107|gb|EED34456.1| fimbrial assembly protein PilQ, putative [gamma proteobacterium
           NOR51-B]
          Length = 729

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 119/303 (39%), Gaps = 33/303 (10%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYAN-SSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
            G  R++  ++ +++  +   S    +  AN ++ + ++  ++I    QV ++  I    
Sbjct: 423 EGASRSMVSARGSIKFDKRTNSIIITDTAANLAAVRDLIEKVDIPI-RQVMIEARIVIAD 481

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA--------ADFGGKFVSEGG--------------- 243
            D+   +G +      + G     +        A    + ++  G               
Sbjct: 482 SDLNNSLGVRWGGGYLNRGSDSITSVARGLDDVATLNTQAIAGAGLSYPANPLVDLGIEE 541

Query: 244 ----DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                F++            L ALE +     +++P +       A+  SG +  Y+  +
Sbjct: 542 GGKSGFAIGFTSKDLFLTAELQALEASGQGEIVSQPKVITGDKLPATIKSGTEIPYQEGA 601

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKA 356
           +S GAT+    +  + L  TP +   GRI L +          V   N G +PS    + 
Sbjct: 602 AS-GATTTQFKEAVLKLEVTPNITPDGRILLDLVINQDSVGEEVGTPNGGRIPSIDTTEL 660

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V + +G T+VL G+ + D +     +P+L  IP LG LF+++     + E  I  TP
Sbjct: 661 TTQVLVGNGETVVLGGVFQSDERIDVSKVPVLGDIPYLGNLFKSTIKQSIKQETLIFITP 720

Query: 417 FLV 419
            ++
Sbjct: 721 RIL 723


>gi|146339226|ref|YP_001204274.1| putative general secretion pathway protein D signal peptide
           [Bradyrhizobium sp. ORS278]
 gi|146192032|emb|CAL76037.1| Putative general secretion pathway protein D; putative signal
           peptide [Bradyrhizobium sp. ORS278]
          Length = 778

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 131/285 (45%), Gaps = 25/285 (8%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
            A  ++ + L  + + QY  S  ++ +  L+   + QV ++ TIAEV      Q G Q  
Sbjct: 464 TADSVNNSLLIYASQEQY--SIVERTVRQLDRP-QRQVAIEATIAEVTLTDDLQFGVQSY 520

Query: 219 ITGSSSG--PSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--------ETVLHALERATA 268
           I     G  P      D     ++  G+  +   +  F+F          +L AL   T 
Sbjct: 521 IMSRDLGLKPDTGSFGDAASTALATAGNVVLNRAIPGFNFLVGSATTPRLILSALHAVTD 580

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTV 322
           ++ L+ P+L  I  Q A+   G +   +T +      ++T A++      G++L   P +
Sbjct: 581 VKVLSNPSLVVIDNQVATLQVGNEIPIQTGTATVLTGNNTVASTTDYRSTGIILRVVPRI 640

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            + G + L ++ E+S  + G N G+       P+   RK  ++V + SG T++LAGL+ D
Sbjct: 641 NANGNVRLDVEQEISNALNGTNGGNGATNSLTPTVATRKLRSSVAVASGQTVLLAGLISD 700

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              + + GIP + +IP +G LF  S  N + TE+ I   P +++ 
Sbjct: 701 TQNRTRNGIPGIDQIPGIGDLFSQSGNNVQRTELIIFIRPQIIRD 745


>gi|307295325|ref|ZP_07575164.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
 gi|306878828|gb|EFN10047.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
          Length = 412

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 134/307 (43%), Gaps = 26/307 (8%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA---------GEDQVTL 198
            G++     S R++ L+     ++  + +           + +A         GE  V +
Sbjct: 73  EGVLSVAAPSPRSLRLTAIGAGEATVSVFGGDGGLIGREAVRVAPADAPVVRAGEQVVAV 132

Query: 199 KVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            V  A V    LK +GF  S     I G+   PS   +A F    +S      ++   + 
Sbjct: 133 DVQFAAVSATTLKALGFNFSKLSGDIQGAIVSPSSLGSASFDPGGLSLEASAPIQNAFNL 192

Query: 254 F------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305
           F          VL AL      + LA+PTL   SG+ ASF +GG+       +S      
Sbjct: 193 FLSAPNRGIGAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEFPVPVPQASGSGNML 252

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVE 361
           S+   ++GV L  TP VLS   I L+I  EVSE      + +    +P  R R A+TTVE
Sbjct: 253 SIQYKEFGVRLSVTPFVLSKDHIVLKIAPEVSELDYANGVQLQGYVVPGLRRRSAETTVE 312

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L SG + V+AGL        KE  P L  +P+LGA F+  +  +E+ E+ I ATP LV  
Sbjct: 313 LGSGQSFVIAGLSYSSQTVTKEKTPFLGDLPVLGAFFKRQQNQKEKQELIIVATPRLVTA 372

Query: 422 VAMRDLS 428
           V   ++ 
Sbjct: 373 VKPEEVP 379


>gi|170023253|ref|YP_001719758.1| general secretion pathway protein D [Yersinia pseudotuberculosis
           YPIII]
 gi|169749787|gb|ACA67305.1| general secretion pathway protein D [Yersinia pseudotuberculosis
           YPIII]
          Length = 640

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 97/249 (38%), Gaps = 14/249 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKF 238
           +V+  L+I    QV ++  I E +      +G +     S   +    S     + G   
Sbjct: 336 EVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNSDGLLNNNGWGI 394

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     +      + +++ +L AL        LA P++  +    A F  G +      
Sbjct: 395 ATTITGLTAG--FYKGNWDVLLSALSTNKNNNILATPSIVTLDNMEAEFNVGQEVPVLIS 452

Query: 299 SSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSY 351
           + +T       S++    GV+L   P +     + L I+ EVS                +
Sbjct: 453 TQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVF 512

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R  +  V + SG T+V+ GLL      +   +P L  +P++G LFR ++   E++ + 
Sbjct: 513 NKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLI 572

Query: 412 IAATPFLVK 420
           +   P +++
Sbjct: 573 LFIKPTILR 581


>gi|255320222|ref|ZP_05361407.1| fimbrial assembly protein PilQ [Acinetobacter radioresistens SK82]
 gi|255302661|gb|EET81893.1| fimbrial assembly protein PilQ [Acinetobacter radioresistens SK82]
          Length = 726

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 33/276 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           +++++LL++A   QV ++  I     D  K++G +  I       + S            
Sbjct: 452 RRMIDLLDVA-VKQVMVEARIVRASTDFTKEMGVKWGILSQGITRNNSLLVGGSETTLWN 510

Query: 231 ------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                               D G               L  F  +  L AL+       +
Sbjct: 511 LRDPDDDGKYTIERPQNLNVDLGVTASGASRIAFGLISLSDFMLDLELSALQADGYGEVI 570

Query: 273 AEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           + P +     Q A   SG Q  Y++     +   ++    D  + L+ TP++   G+I +
Sbjct: 571 STPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQM 630

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            +      P      G + +    + +T V + +G T+VL G+ + + +  +  +P+L  
Sbjct: 631 LLNITSDTPGNPTPTGQI-AINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGD 689

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +P +G LFR    +  + E+ I  TP +V   A  +
Sbjct: 690 LPGVGRLFRRDAKSNNKRELLIFVTPRIVNDSATGN 725


>gi|145300802|ref|YP_001143643.1| MSHA biogenesis protein MshL [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|88866576|gb|ABD57345.1| MshL [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853574|gb|ABO91895.1| MSHA biogenesis protein MshL [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 556

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 116/288 (40%), Gaps = 37/288 (12%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----------ITGSSSGPSK 228
           + ++ ++      + QV L+  I EV  +   + G   S           ITG SS    
Sbjct: 261 AVREFLSQSETHLKRQVVLEARILEVALNEGYEQGVDWSGLSASWDGNKGITGGSSLSPT 320

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                    F + GG    K  +   +F   ++ L+    + TL+ P +TA + Q A   
Sbjct: 321 QLPTTPNQIFTALGGGAGFK--ISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIK 378

Query: 289 SGGQHLYKT------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            G    + T            VS  T    +T    G+ L  TP +   G++ L I   V
Sbjct: 379 VGTDEYFVTKASTTITSNSSGVSDRTPNVELTPFFSGISLDVTPQIDEEGKVLLHIHPSV 438

Query: 337 -------SEPVIGVNAG----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
                      +G + G     +    +R++DT V+  +G  IV+ GL+K D Q++   +
Sbjct: 439 IDTEEQNKVIDMGTSGGRLELPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKV 498

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDD 432
           PLL  IP +G  F N R + ++ E+ I   P +V K     +L R  D
Sbjct: 499 PLLGDIPWIGEAFTNRRESTKKVELVILLKPTVVEKDTWQNELKRSAD 546


>gi|134302144|ref|YP_001122113.1| type IV pilus secretin/type II and III secretion system protein
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|134049921|gb|ABO46992.1| type IV pilus secretin/type II and III secretion system protein
           [Francisella tularensis subsp. tularensis WY96-3418]
          Length = 590

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 19/256 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K+V+N ++I   DQV ++  I EV R    ++GF + +   S   +            + 
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390

Query: 242 GGDFS------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           G   +               +      E  + ALE  +    +A P L   + Q A    
Sbjct: 391 GPTPTPVDTFVGTTAKLAYTIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVAFIKD 450

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNA 345
           G    Y   ++S  A +V   +  + L  TP +   G I + I    +     P      
Sbjct: 451 GEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQG 509

Query: 346 GDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           GD+P   + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG LF  ++  
Sbjct: 510 GDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKIT 569

Query: 405 REETEIFIAATPFLVK 420
            +++E+ I  TP +++
Sbjct: 570 DQDSELLIFITPKIIE 585


>gi|326575064|gb|EGE24993.1| type IV pilus secretin PilQ [Moraxella catarrhalis O35E]
          Length = 473

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 29/299 (9%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           T  + G + + + +    + + T + Q      AN   K ++  ++I   +QV ++  I 
Sbjct: 182 TTAVRGTLLSERGTVTVDKRTNTLIIQDVPASVAN--IKALIERIDIP-VEQVMIEARIV 238

Query: 204 EVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGG--------DFSVKGVL 251
               +  +++G      G +     G S+        + V+ GG        D  V   +
Sbjct: 239 SANENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAM 298

Query: 252 DRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            R +F          +  L A++       ++ P +     Q+A  +SG Q  Y+  + S
Sbjct: 299 GRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHS 358

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            GA++    +  ++L  TP +   G+IGL++  +   PV  +      + +    +T V 
Sbjct: 359 -GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL---GHIAIQEDAIETNVI 414

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ I  TP LV+
Sbjct: 415 IEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473


>gi|237756260|ref|ZP_04584819.1| type IV pilus secretin PilQ [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691579|gb|EEP60628.1| type IV pilus secretin PilQ [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 602

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 98/247 (39%), Gaps = 20/247 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKS------FAADFGG 236
             Q+ ++  I +V    LK +G Q     ++           G S S      +A DF  
Sbjct: 354 PYQIAIEARIVQVSTSNLKDLGIQWGGRATNIDNNNTKIITGGGSTSIISGGRYAVDFPS 413

Query: 237 KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
              +  G F++  V        +  L AL+     + L++P +  I G++A  + G +  
Sbjct: 414 SSATFPGGFAIGFVFGGLQNFLDVRLSALQSIGKSKILSKPQIVTIDGETAEISQGYEVP 473

Query: 295 YKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
           Y T  ++ G T  SV+     + L+ TP   + G I + +      P         P  +
Sbjct: 474 YTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDLIITQDIPDFKNLILGNPPIQ 533

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +   + V    G  + + G+L+        G+P L  IPILG LF+      +  E+ I
Sbjct: 534 TKTVTSKVVAKDGSVVAIGGILEKTEDVKDSGVPGLMNIPILGYLFKEKYQQEKTNELLI 593

Query: 413 AATPFLV 419
             +P +V
Sbjct: 594 FLSPKIV 600


>gi|323491669|ref|ZP_08096847.1| MSHA biogenesis protein MshL [Vibrio brasiliensis LMG 20546]
 gi|323314031|gb|EGA67117.1| MSHA biogenesis protein MshL [Vibrio brasiliensis LMG 20546]
          Length = 551

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 132/334 (39%), Gaps = 47/334 (14%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
           ++E     ++  G  +++  S +A  ++                 +++ N L ++ +   
Sbjct: 216 QLESAVSQLIGSGSGQSVVVSPQASVITVRAFPDE---------IREIRNFLMVSQQRMH 266

Query: 195 -QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---- 249
            QV L+  I EV      Q G   S   +S+G + +       K  + G   ++ G    
Sbjct: 267 RQVILEAKILEVTLSDGYQQGINWSKAFTSNGTNYTLGQGSTIKDSTTGLPVTLPGLDAI 326

Query: 250 ----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-- 297
                     V+   SFE VL  +     +  L+ P +TA + Q A    G    + T  
Sbjct: 327 GTLLGGQSNLVISSGSFEAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDSYFVTDF 386

Query: 298 ---------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ-------TEVSEPVI 341
                     +++T    +T    G+ L  TP +   G + L +         E  E   
Sbjct: 387 SANTDSSSSTTNTTTDIELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVTQEQKEINY 446

Query: 342 GVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           G N+  +P  +  +R++D+ +    G  +V+ GL+K +  +    +P L  +P LG LFR
Sbjct: 447 GSNSLTLPLATSSIRESDSVIRAQDGDVVVIGGLMKSNTVEQVSKVPFLGDVPALGHLFR 506

Query: 400 NSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
           N+    ++TE+ I   P +V      ++L R  D
Sbjct: 507 NTSQLTQKTELVILLKPSVVGINTWQKELERSRD 540


>gi|311697132|gb|ADQ00004.1| type II and III secretion system protein [marine bacterium HP15]
          Length = 373

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 15/257 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV   + I EV R  L  +G  +S   +    + + +    G F   G      G+  
Sbjct: 92  SSQVQTDIRIVEVNRSELNTLGVYYSKLFNGGSQTIALSPPGAGGFRGFGPSAGATGITT 151

Query: 253 --------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                     S  ++++ALE      TLAEP+L ++SGQ+A+F SGG+     VSS  G 
Sbjct: 152 EGFNLFSFGSSSLSIINALESGGFAYTLAEPSLVSLSGQTATFLSGGEFPIP-VSSDNGE 210

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360
             +   ++GV L  TPTV+S   I L++  EVSE      +      +P  R+R+  TTV
Sbjct: 211 VEIEFKEFGVSLALTPTVVSDDEIILKVAPEVSELDFTSGVSTGGVAVPGLRIRRTQTTV 270

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G + +++GL+        + IP L  +P++GA FR+ R   E+ E+ +  TP  V 
Sbjct: 271 TMAPGESFIISGLVSRATTNRSDRIPGLGNLPVIGAFFRSDRVASEDKELIMVVTPKFV- 329

Query: 421 PVAMRDLSRPDDHYSVE 437
             A + LSR   ++   
Sbjct: 330 -SAQKQLSREARNFGKA 345


>gi|15597065|ref|NP_250559.1| secretion protein XqhA [Pseudomonas aeruginosa PAO1]
 gi|218892174|ref|YP_002441041.1| secretion protein XqhA [Pseudomonas aeruginosa LESB58]
 gi|9947858|gb|AAG05257.1|AE004613_2 secretion protein XqhA [Pseudomonas aeruginosa PAO1]
 gi|218772400|emb|CAW28182.1| secretion protein XqhA [Pseudomonas aeruginosa LESB58]
          Length = 776

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 122/312 (39%), Gaps = 38/312 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
           + ++  L++    Q+ ++  I E+  +I   +G Q ++          FA          
Sbjct: 340 EDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLL 398

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A   GK  +E  D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G
Sbjct: 399 GALQAGKPPAELPDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVG 457

Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               ++T S +T A       T+V   D GV L  TP +     + L I+ E+S      
Sbjct: 458 QNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTA 517

Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                        R   +TV    G  IVL GL++DD+Q+    +PLL  IP +G LFR+
Sbjct: 518 TLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRS 577

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
           SR  R +  + +   P +V+  A                 +     R   I   + A+  
Sbjct: 578 SRETRVKRNLMVFLRPSIVRDAAG---------------LERISHGRYRSIQLLRGAAGE 622

Query: 461 EGQNYKGAIGFI 472
             +      G I
Sbjct: 623 PARPLFEDAGAI 634


>gi|240136813|ref|YP_002961280.1| putative General secretion pathway protein D [Methylobacterium
           extorquens AM1]
 gi|240006777|gb|ACS38003.1| putative General secretion pathway protein D [Methylobacterium
           extorquens AM1]
          Length = 792

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 126/295 (42%), Gaps = 22/295 (7%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A E + + +  + RNQY      +++  L+ A   QV L+  IAEV  +   Q G Q  +
Sbjct: 469 ADEANNSLVISATRNQYDKIL--RILGRLD-AMPMQVLLETVIAEVTLNNELQFGVQWFL 525

Query: 220 TGSSS-------GPSKSFAADFGGKFV----SEGGDFSVKGVLDRFSFETVLHALERATA 268
             S S         ++S A    G       +  G      +L+   F  VL+AL+  T 
Sbjct: 526 KNSGSRFNLAQADTNRSVAQGTSGTDALIKAAARGVPGFNYLLNASDFNVVLNALQGVTR 585

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPT 321
           +  ++ P +T +  ++A    G Q      S  +           +   D GV+L  TP 
Sbjct: 586 VNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVILSVTPR 645

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           V   G + L I  EVS+ V    +  + P+ R R+  T+V +  G ++ + G++++  Q 
Sbjct: 646 VNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAINDGHSLAIGGMVQEKAQI 705

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
             E +P+L  +PI+G  FRN    R  TE+ +   P +++     D    D    
Sbjct: 706 TNESVPVLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEADRIAEDFRQQ 760


>gi|254369170|ref|ZP_04985182.1| type IV pilus assembly protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122120|gb|EDO66260.1| type IV pilus assembly protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 590

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 104/257 (40%), Gaps = 21/257 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K+V+N ++I   DQV ++  I EV R    ++GF + +    SG        F     S 
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYDVVDP-SGRVNIGLYTFNSNPNSA 389

Query: 242 GGDFSVK-------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
            G                   +      E  + ALE  +    +A P L   + Q A   
Sbjct: 390 PGPTPTPVDTFVGTTAKLAYTIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVAFIK 449

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVN 344
            G    Y   ++S  A +V   +  + L  TP +   G I + I    +     P     
Sbjct: 450 DGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQ 508

Query: 345 AGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            GD+P   + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG LF  ++ 
Sbjct: 509 GGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKI 568

Query: 404 NREETEIFIAATPFLVK 420
             +++E+ I  TP +++
Sbjct: 569 TDQDSELLIFITPKIIE 585


>gi|148555505|ref|YP_001263087.1| general secretion pathway protein D [Sphingomonas wittichii RW1]
 gi|148500695|gb|ABQ68949.1| general secretion pathway protein D [Sphingomonas wittichii RW1]
          Length = 682

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 28/275 (10%)

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----GSSSGPSKSF- 230
            A +  + ++  L++    QV ++  I E+  D  +Q+  Q  I       +SG + SF 
Sbjct: 372 AAIAEVEPLIAQLDVRRP-QVLIEAAIVEISGDQAEQLAVQLGIGAAAINRASGGATSFT 430

Query: 231 -------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +   G  +S GG  +++      +F  +L A+ ++T    L+ P+L
Sbjct: 431 SPGLPLQSILTAIGSPAAGAVLSNGGSANIRF---GDNFSILLQAIGQSTRSNLLSTPSL 487

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           T +  + A    G    ++T S ST        T++   D G+ L   P +     + L 
Sbjct: 488 TTLDNEPAEIVVGQNVPFRTGSFSTDGNTINPFTTIERQDVGLTLRVVPRIHQGNVVRLE 547

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +  EVS     V          R   T+V    G TIVL GL+ DD  Q +  +P+L  I
Sbjct: 548 VAQEVSSLTNAVTGAADLITNRRSIQTSVLADDGQTIVLGGLISDDRTQTRSQVPILGDI 607

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           PI G LFR+ + +  +  +F+   P +++     +
Sbjct: 608 PIAGELFRSRKESHVKRTLFVFLKPTILRDREAAN 642


>gi|254240262|ref|ZP_04933584.1| secretion protein XqhA [Pseudomonas aeruginosa 2192]
 gi|126193640|gb|EAZ57703.1| secretion protein XqhA [Pseudomonas aeruginosa 2192]
          Length = 776

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 122/312 (39%), Gaps = 38/312 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
           + ++  L++    Q+ ++  I E+  +I   +G Q ++          FA          
Sbjct: 340 EDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLL 398

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A   GK  +E  D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G
Sbjct: 399 GALQAGKPPAELPDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVG 457

Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               ++T S +T A       T+V   D GV L  TP +     + L I+ E+S      
Sbjct: 458 QNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTA 517

Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                        R   +TV    G  IVL GL++DD+Q+    +PLL  IP +G LFR+
Sbjct: 518 TLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRS 577

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
           SR  R +  + +   P +V+  A                 +     R   I   + A+  
Sbjct: 578 SRETRVKRNLMVFLRPSIVRDAAG---------------LERISHGRYRSIQLLRGAAGE 622

Query: 461 EGQNYKGAIGFI 472
             +      G I
Sbjct: 623 PARPLFEDAGAI 634


>gi|120609611|ref|YP_969289.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
 gi|120588075|gb|ABM31515.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
          Length = 810

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 108/286 (37%), Gaps = 42/286 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------ 223
           + V++ L+     QV ++  I EV  + +   G Q      +                  
Sbjct: 433 RAVIDQLD-GRRAQVLVESLIVEVAANKVADFGIQWQGVMGNYGNGTIGVIGTNSTASGG 491

Query: 224 -----------SGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAI 269
                      SG      +         G   +V     +   +    + + LE     
Sbjct: 492 ANILNLALAAASGSVSGVTSALSASGARPGNGLNVAIAPRINGNYYLGALANFLENTGDA 551

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPT 321
             L+ P L  +  + A    G    + T S +           T+V   D G++L   P 
Sbjct: 552 NVLSTPNLLTLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVGLMLRVRPQ 611

Query: 322 VLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +   G + L +  EVS+   G  NA + P+   R  ++TV +  G  IVL GLL+D    
Sbjct: 612 ISENGTVKLSLYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGSVIVLGGLLEDRYSM 671

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            ++ +PL+  +P++G LFRN    R++T + +   P +++  A  D
Sbjct: 672 GQDKVPLMGDLPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSD 717


>gi|317051459|ref|YP_004112575.1| general secretion pathway protein D [Desulfurispirillum indicum S5]
 gi|316946543|gb|ADU66019.1| general secretion pathway protein D [Desulfurispirillum indicum S5]
          Length = 638

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 125/324 (38%), Gaps = 30/324 (9%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            D   +   L+  +                       + S +A E     + ++     A
Sbjct: 276 ADATKMAELLKGLVEGRTASASGSGRD---SAPAPAEKFSIQADESLNALVIRAEPATMA 332

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFG 235
               + ++  L++    QV ++  I EV  D L Q+G Q +    G + GP    +    
Sbjct: 333 --EIQSIIAQLDVR-RAQVLIEAVIVEVVGDSLNQLGVQLAARSAGDTLGPIGGTSFSNA 389

Query: 236 GK---------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G                 +S+G    V           +L AL   T    L+ P++  +
Sbjct: 390 GTSLSNILTSIATQTPPTISDGMSLGVATTSGSVEMGALLTALASVTNANLLSTPSILTL 449

Query: 281 SGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
             Q AS   G     +T      S +   T++   D G+VL  TP++     + ++++ E
Sbjct: 450 DNQEASILVGQNIPVRTGTYSHDSGTNPFTTIQRQDVGIVLKTTPSIYEGNSVRMQVELE 509

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            S  +      D      R+  TT+   +  TIVL GL+KDD+Q++   +PLL  IP+LG
Sbjct: 510 ASSVL--TEGTDGIITNKREIITTILADNNETIVLGGLIKDDVQEVVSKVPLLGDIPLLG 567

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LF+  R   E+  + +   P ++
Sbjct: 568 RLFQARRQRVEKRNLLVFLRPTIL 591


>gi|187931580|ref|YP_001891564.1| type IV pili secretin component [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712489|gb|ACD30786.1| type IV pili secretin component [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 590

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 19/256 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K+V+N ++I   DQV ++  I EV R    ++GF + +   S   +            + 
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390

Query: 242 GGDFS------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           G   +               +      E  + ALE  +    +A P L   + Q A    
Sbjct: 391 GPTPTPVDTFVGTTAKLAYTIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVAFIKD 450

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNA 345
           G    Y   ++S  A +V   +  + L  TP +   G I + I    +     P      
Sbjct: 451 GEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQG 509

Query: 346 GDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           GD+P   + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG LF  ++  
Sbjct: 510 GDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKIT 569

Query: 405 REETEIFIAATPFLVK 420
            +++E+ I  TP +++
Sbjct: 570 DQDSELLIFITPKIIE 585


>gi|254251012|ref|ZP_04944330.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
 gi|124893621|gb|EAY67501.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
          Length = 780

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 112/314 (35%), Gaps = 54/314 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFA 231
           + V++ L+ A   QV ++  I E+       +G Q  +             +SG   S  
Sbjct: 397 RAVIDQLD-ARRAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPTSGLGNSII 455

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFS-------------------FETVLHALERATAIRTL 272
               G   +  G  +  G+                           +L      +    L
Sbjct: 456 NLTAGGTTTSAGGVTGGGLAANLGTLTQGLNVGWLHNMFGVQGLGALLQYFSGVSDANVL 515

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLS 324
           + P L  +  + A    G   L  T S S   +  T          D G+ LH  P +  
Sbjct: 516 STPNLITLDNEEAKIVVGQNVLIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITD 575

Query: 325 PGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G + L++ TE S  V    +    P++  R   +T+   +G  IVL GL++D+ Q    
Sbjct: 576 GGILKLQLYTEDSAVVPSTTSSQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNS 635

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +PLL  IP +G LFR+    R++T + +   P ++            D     + A+  
Sbjct: 636 KVPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII-----------TDR----NVAQEV 680

Query: 444 FFNRVNKIYGPKEA 457
             NR + I G   A
Sbjct: 681 TANRYDYIQGVTGA 694


>gi|89256170|ref|YP_513532.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314642|ref|YP_763365.1| type IV pilus assembly protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502212|ref|YP_001428277.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010550|ref|ZP_02275481.1| type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. holarctica FSC200]
 gi|290954188|ref|ZP_06558809.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312388|ref|ZP_06803168.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144001|emb|CAJ79239.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129541|gb|ABI82728.1| type IV pilus assembly protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156252815|gb|ABU61321.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 590

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 21/257 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------GPSK 228
           K+V+N ++I   DQV ++  I EV R    ++GF + +   SS              P+ 
Sbjct: 332 KEVVNDIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSSRVNIGLYTFNSNPNPAP 390

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                    FV      +   +      E  + ALE  +    +A P L   + Q A   
Sbjct: 391 GPTPTPVDTFVGTTAKLAYT-IAGGVRLEMEVRALESESLAEEVASPHLVVANNQVAFIK 449

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVN 344
            G    Y   ++S  A +V   +  + L  TP +   G I + I    +     P     
Sbjct: 450 DGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQ 508

Query: 345 AGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            GD+P   + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG LF  ++ 
Sbjct: 509 GGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKI 568

Query: 404 NREETEIFIAATPFLVK 420
             +++E+ I  TP +++
Sbjct: 569 TDQDSELLIFITPKIIE 585


>gi|226946542|ref|YP_002801615.1| secretion system protein [Azotobacter vinelandii DJ]
 gi|226721469|gb|ACO80640.1| Bacterial secretion system protein [Azotobacter vinelandii DJ]
          Length = 717

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 125/338 (36%), Gaps = 35/338 (10%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            ++A L   L +        +  +  +V     V   + S    E +   ++   +++  
Sbjct: 380 AELAPLRRELLQVNYAKATDIAKLFQSVTSSDEVEEQRGSITVDERTNNIIAYQTQDRLD 439

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAA 232
               ++++  L++    QV ++  I E   D  K +G +   +      S  G   + + 
Sbjct: 440 --ELRRIVAQLDVP-VRQVMIEARIVEANVDYDKSLGVRWGGSFVNDQWSLYGKDGAQSV 496

Query: 233 DFGGKFVSEGG--------------------------DFSVKGVLDRFSFETVLHALERA 266
           D G  F+   G                             +  + D    +  L A+E+ 
Sbjct: 497 DDGQVFLPGTGQVGNFTLEDGMAPVPFVDMGVANSTSGLGIGFISDHLILDLQLSAMEKT 556

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                +++P +     ++A   +G +  Y+  SSS   ++ +  +  + L  TP +    
Sbjct: 557 GNGEVISQPKVLTSDKETAKILTGEEIPYQEASSSGATST-SFKEAALSLEVTPQITPDN 615

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           RI + ++    +         +P     + +  V +  G TIV+ G+  +   +  + +P
Sbjct: 616 RIIMEVKVTKDQADFAKALNGVPPINKNEVNAKVLIGDGETIVIGGVFSNIQAKSVDKVP 675

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
            L  +P +G LFR       ++E+ +  TP ++   A+
Sbjct: 676 FLGDLPFIGRLFRRDVVADSKSELLVFLTPRILNSQAI 713


>gi|207725091|ref|YP_002255488.1| gspd-related protein [Ralstonia solanacearum MolK2]
 gi|206590321|emb|CAQ37282.1| gspd-related protein [Ralstonia solanacearum MolK2]
          Length = 754

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 149/410 (36%), Gaps = 55/410 (13%)

Query: 53  GLNKVIILQVPVDVQ-DVLVSDPTKADVV------------VHSPRTMYLFGKNVGQANV 99
           GLN V    V  D +  V + + T A VV            V     + ++         
Sbjct: 206 GLNFVFDKDVRTDQKVTVFLRNSTVASVVNTVLLTNQLEQRVLDGNAILIYPNTP----- 260

Query: 100 ILIGHDGKQMLNLD-ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
                D + +     +L   D   +  TL+  +   +I V+   + +V+      IQ ++
Sbjct: 261 -AKQRDYQPLTVRTFVLSNSDAKDVANTLKTILKTRDIVVDEKRNMIVMRDTPDAIQAAE 319

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           + V + E                           E +V L+V I EV+R  L+ +G Q  
Sbjct: 320 KLVAVHEM-------------------------PEPEVMLEVEILEVKRSRLQDLGIQLP 354

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
              S +  + S         +       +   +   +    ++     T    LA P + 
Sbjct: 355 SQLSLTPLASSSGGTLTLDDLRHLNPTRIGATVSPLN----VNVNAAVTDTNVLANPRVR 410

Query: 279 AISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
             + + A    G +    T +S+     A +V   D G+ L   PTV     + +RI  E
Sbjct: 411 TRNKEKARIQVGQRVPNVTTTSTATGFVAENVQYVDVGLKLEVEPTVTPDNEVTIRINLE 470

Query: 336 VSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           VS+ +  V             R A T + L  G   +LAGL++D+ +     +P L  IP
Sbjct: 471 VSDIISQVQTKSGSIAYEIGTRNATTLLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIP 530

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
            LG LF     N+ ++EI ++ TP +++P    +L   +     E   + 
Sbjct: 531 ALGRLFGAQSDNKLKSEIVLSITPRVIRPAQRPNLGSAEFDSGTESSLRL 580


>gi|170739479|ref|YP_001768134.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
 gi|168193753|gb|ACA15700.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
          Length = 797

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 125/307 (40%), Gaps = 21/307 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205
            G V      +  + +     + S       +  +K++ +L    A   QV L+  IAEV
Sbjct: 457 SGAVYGSGARRGGIGIVADETNNSLVISATRTQYEKILRILGRLDARPTQVLLETVIAEV 516

Query: 206 RRDILKQIGFQH---------SITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRF 254
             +   + G Q          ++  S +  S +      G  VS    G      +L+  
Sbjct: 517 TLNDKLEFGVQWFLKNGGSRFNLAQSDTAASVASGTSGAGALVSAAMRGVPGFNYLLNDA 576

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSV 307
            F  VL+AL   T +  L+ P +T +  ++A    G Q      S  +           +
Sbjct: 577 DFHVVLNALRGVTRVNVLSSPNITVLDNRTARLQIGDQVPIVKQSGQSALAGNAPILNQI 636

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGG 366
              D GV+L  TP V   G + L I  EVS+ V    +  + P+ R R+  T+V +  G 
Sbjct: 637 ELKDTGVILSVTPRVNKNGLVVLDINQEVSDVVPTTTSNINSPTIRQRRVATSVAVSDGH 696

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++ + G++++  Q   E +P+L  +P++G  FRN    R  TE+ +   P +++  A  D
Sbjct: 697 SLAIGGMVQEKAQIGTEALPVLGDLPVIGPAFRNKSDLRVRTELIVFLRPKVIRGTADAD 756

Query: 427 LSRPDDH 433
               D  
Sbjct: 757 RIASDFR 763


>gi|82778251|ref|YP_404600.1| putative type II secretion protein [Shigella dysenteriae Sd197]
 gi|81242399|gb|ABB63109.1| putative type II secretion protein [Shigella dysenteriae Sd197]
          Length = 611

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 241 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 299

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 300 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 359

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 360 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 419

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 420 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 479

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 480 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 537

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 538 KRNLMVFIRPTILRDGMAAD 557


>gi|260771969|ref|ZP_05880886.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio metschnikovii CIP 69.14]
 gi|260612836|gb|EEX38038.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio metschnikovii CIP 69.14]
          Length = 663

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 110/288 (38%), Gaps = 46/288 (15%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGP--------- 226
            V++ L+I    QV ++  I E+       +G Q         I   +SG          
Sbjct: 322 DVISQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLKDGAVIQYGNSGAQVGQVMVGL 380

Query: 227 -----------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
                                  + +   D+     +  G       +    +  ++ A+
Sbjct: 381 EQAKDTTESRAVYDRDGNFLRNETTTKKGDYSTLASALSGVNGAALGVMMGDWTALISAV 440

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHF 318
              ++   L+ P++T +    ASF  G +    T S++         +V   + G+ L  
Sbjct: 441 SSTSSTNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSNNDNPFQTVERKEVGIKLKV 500

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            P +     + L I+ EVS  +    A D+  +  R+ +TTV +  G  +VL GL+ +  
Sbjct: 501 VPQINEGDSVQLSIEQEVSNVLGAQGAVDV-RFAKRQLNTTVMVQDGQMLVLGGLIDERT 559

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            + +  +P+L  IP+LG LFR++    E+  + +   P +++     D
Sbjct: 560 AESESKVPILGDIPLLGYLFRSTNTTVEKKNLMVFIKPTIIRDGMTAD 607


>gi|326318805|ref|YP_004236477.1| general secretion pathway protein D [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375641|gb|ADX47910.1| general secretion pathway protein D [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 823

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 117/257 (45%), Gaps = 21/257 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGS---SSGPSKSFAADFGGKFVSEGGD----- 244
             QV ++ +I EV  D   Q G Q + + S   +   +     +  G   S G       
Sbjct: 530 PTQVLIEASIVEVTLDDSLQYGLQWAFSNSGPSNLNGAGQLLTNAPGSNSSIGASIPTPT 589

Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299
              FS        +   VL+AL     ++ ++ P+L  +   +A  + G Q   KT +  
Sbjct: 590 TSGFSYALSNSLGNVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTGTLT 649

Query: 300 -----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYR 352
                 ++ A ++   D GV L  TP+V +   + ++I   V++ V   +      P ++
Sbjct: 650 SAISGGTSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGNVSLQPVFQ 709

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+  + V + SG  IVL GL++D     K GIPLL  IP++G+LF N+      TE+ +
Sbjct: 710 QRQITSKVAVRSGEAIVLGGLIRDTNNSSKSGIPLLQDIPVVGSLFSNNGKTGTRTELLV 769

Query: 413 AATPFLVK-PVAMRDLS 428
             TP +V+  + +R++S
Sbjct: 770 VITPKVVRTDIDIREVS 786


>gi|160901128|ref|YP_001566710.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
 gi|160366712|gb|ABX38325.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
          Length = 787

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/283 (21%), Positives = 113/283 (39%), Gaps = 39/283 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGK 237
           + V++ L+     QV ++  I E++ + L Q G Q     S  G   G   + ++  G  
Sbjct: 424 RAVIDKLD-GRRAQVLIESLIVELKDNRLAQFGVQWQAILSNNGKVLGSIGNNSSVAGAN 482

Query: 238 FVSEGGDFSVKGVLD-------------------------RFSFETVLHALERATAIRTL 272
            +S    F+  G ++                           +   + + L+ +     L
Sbjct: 483 ILSLLSAFNKDGSINASGITGDTVNSMRGTNLGFTQSVNGNTTLGFLANFLQNSGDANIL 542

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTVLS 324
           + P L  +  + A    G      T S ++ +T        +V   D G++L   P +  
Sbjct: 543 STPNLMTLDNEEARIIVGQNVPMVTGSYASNSTGGTVNPFTTVERKDVGLMLRVRPQINE 602

Query: 325 PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G + L +  EVS          +  +   R  ++ V +  G  IVL GL+ D+  Q ++
Sbjct: 603 NGTVKLAVFQEVSSVDESTRKDTNGLTTNKRSIESNVLVEDGNIIVLGGLIDDNYSQAED 662

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            IPLL  IP+LG LFRN+   R +T + +   P +++  A  +
Sbjct: 663 RIPLLGDIPVLGNLFRNTNRKRNKTNLMVFLRPVVMRDAAATN 705


>gi|308051183|ref|YP_003914749.1| pilus (MSHA type) biogenesis protein MshL [Ferrimonas balearica DSM
           9799]
 gi|307633373|gb|ADN77675.1| pilus (MSHA type) biogenesis protein MshL [Ferrimonas balearica DSM
           9799]
          Length = 551

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/310 (24%), Positives = 124/310 (40%), Gaps = 27/310 (8%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           D ++ + L +  L       +     +  +       E QV L+  I EV      Q G 
Sbjct: 242 DGRQVLTLPQAGLVSVKAYPHELREVESFLGQAQQNLERQVVLEARILEVVLSDGYQQGI 301

Query: 216 QHS-ITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
             S +TGS      SF    G     V++              F  V+  L+    + TL
Sbjct: 302 NWSEVTGSIGSTDISFGTSEGQFSNAVTDVIGGITGISFTGTDFSAVVTLLDTQGDVDTL 361

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDY-------GVVLHFTPTV 322
           + P +TAI+ Q A    G    + T  S+T     T +TT D        G+ L  TP +
Sbjct: 362 SSPRVTAINNQKAVIKVGTDEYFVTDISATTVASDTPITTPDVELTPFFSGIALDVTPQI 421

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGL 373
              G + L +   V++                  +   ++R++DT +   SG  +V+ GL
Sbjct: 422 GQSGEVLLHVHPSVTDITEQTKTITALDTTLELPLAQSQIRESDTMIRAHSGDVVVIGGL 481

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRP-- 430
           +K   +Q++  +PLL +IP LG LF N      +TE+ I   P +V+P    + L R   
Sbjct: 482 MKTLQEQVESKVPLLGQIPFLGELFTNRSQRNVKTELVILLRPTIVEPGTWQKQLQRSQQ 541

Query: 431 --DDHYSVED 438
             DD Y  ++
Sbjct: 542 TLDDWYPSQN 551


>gi|37681131|ref|NP_935740.1| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016]
 gi|37199882|dbj|BAC95711.1| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016]
          Length = 547

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/280 (24%), Positives = 109/280 (38%), Gaps = 29/280 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ + +     + QV L+  I EV      Q G   S   +S G S S   +  G  V  
Sbjct: 258 RQFLGISQERMQRQVILEAKILEVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLP 317

Query: 242 GGD-------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           G D             +   SFE VL  +     +  L+ P +TA + Q A    G    
Sbjct: 318 GLDAIGSLLGGQTNVTISDGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQY 377

Query: 295 YKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341
           Y T  SS              ++T    G+ L  TP +   G + L +     EV E   
Sbjct: 378 YVTALSSNVGNDDKSKAVPEVTLTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETK 437

Query: 342 GVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            +N G         +    +R++D+ +    G  +V+ GL+K +  +    +P    IP 
Sbjct: 438 QLNLGGDFQNVTLPLAKSSIRESDSVIRARDGDVVVIGGLMKSNTIERVSKVPFFGDIPA 497

Query: 394 LGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
           LG LFRN+    ++TE+ I   P +V      ++L R  D
Sbjct: 498 LGHLFRNTSNLTQKTELVILLKPTVVGVNTWQKELERSRD 537


>gi|325275690|ref|ZP_08141579.1| general secretion pathway protein D [Pseudomonas sp. TJI-51]
 gi|324099176|gb|EGB97133.1| general secretion pathway protein D [Pseudomonas sp. TJI-51]
          Length = 613

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 121/288 (42%), Gaps = 21/288 (7%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            S ++++  L+     QV +   I EV   I + +G Q  +         +F+    G  
Sbjct: 318 GSVEQIIQQLDQP-RAQVLIHAAIVEVSGSIDEALGVQWGVGTGGLNGGVTFSESGTGLA 376

Query: 239 VSEGGDFSVKG----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
              G +  + G     +    F  ++ AL  ++    L+ P+L  +  Q A    G    
Sbjct: 377 DLLGKEAKLPGGAALAIGTDRFAALISALASSSRSNLLSTPSLLTLDNQEAHILVGQNVA 436

Query: 295 YKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
           +KT S  T         T+V   D G+ L   P +     + L ++ E SE        D
Sbjct: 437 FKTGSYVTPGSGSENPFTTVERKDIGISLKVRPHINEGQSLRLEVEQESSEIAPSTAEND 496

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   R   +T+    G  IV+ GL+KD ++Q++ G+PLLS+IP LG LFR     +E+
Sbjct: 497 LIT-NKRTLKSTILASDGEIIVIGGLIKDSMRQVERGVPLLSRIPWLGGLFRWRSDIQEK 555

Query: 408 TEIFIAATPFLVKPVAMR--------DLSRPDDHYSVEDDAKAFFFNR 447
           T + +   P +++  A R        D  R  D   +  DA+  F  R
Sbjct: 556 TNLMVFLRPTILRSQAERVEVGRRAYDGVRAADDSPLPADAQRLFEPR 603


>gi|170740267|ref|YP_001768922.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
 gi|168194541|gb|ACA16488.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
          Length = 779

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/260 (26%), Positives = 125/260 (48%), Gaps = 19/260 (7%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           A   QV + VTIAEV+ +   + G Q  +   S G  ++     G    +  G  +V   
Sbjct: 503 AVPAQVAVNVTIAEVKLNDELKHGVQFFLDSRSLGLGRN-KGSVGLVSAAASGASNVLKP 561

Query: 251 LDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            + F+F        + V++AL+  T ++ L+ P+L  +  Q A+   G      T  + +
Sbjct: 562 GNGFNFLVGGYSGPDVVINALDGFTDVKVLSSPSLVVLENQPATLQVGDSVPITTRQAQS 621

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                      V   D G++L+  P +     + ++I+ E+S  V G +    P+   R+
Sbjct: 622 VDFANAPLINQVEFRDTGIILNVIPRIGQNDAVTMQIEQEISAVVGGSDTLT-PTISKRR 680

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             +T+ + +G T++LAGL+ D  Q+ ++GIP+L ++P +GALF ++    E TE+ +   
Sbjct: 681 VASTISVANGQTVLLAGLISDKHQRERDGIPILGRLPQIGALFSSTNNADERTELVVFIR 740

Query: 416 PFLVKPVAMRDLSRPDDHYS 435
           P +V+  + RD  R  + Y 
Sbjct: 741 PVVVR--SGRDAQRVAEDYR 758


>gi|262380438|ref|ZP_06073592.1| general secretion pathway protein D [Acinetobacter radioresistens
           SH164]
 gi|262297884|gb|EEY85799.1| general secretion pathway protein D [Acinetobacter radioresistens
           SH164]
          Length = 718

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 33/276 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           +++++LL++A   QV ++  I     D  K++G +  I       + S            
Sbjct: 444 RRMIDLLDVA-VKQVMVEARIVRASTDFTKEMGVKWGILSQGITRNNSLLVGGSETTLWN 502

Query: 231 ------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                               D G               L  F  +  L AL+       +
Sbjct: 503 LRDPDDEGKYTIERPQNLNVDLGVTAPGASRIAFGLISLSDFMLDLELSALQADGYGEVI 562

Query: 273 AEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           + P +     Q A   SG Q  Y++     +   ++    D  + L+ TP++   G+I +
Sbjct: 563 STPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQM 622

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            +      P      G + +    + +T V + +G T+VL G+ + + +  +  +P+L  
Sbjct: 623 LLNITSDTPGNPTPTGQI-AINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGD 681

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +P +G LFR    +  + E+ I  TP +V   A  +
Sbjct: 682 LPGVGRLFRRDAKSDNKRELLIFVTPRIVNDSATGN 717


>gi|78049214|ref|YP_365389.1| type II secretory pathway component [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037644|emb|CAJ25389.1| type II secretory pathway component [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 759

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/313 (24%), Positives = 131/313 (41%), Gaps = 33/313 (10%)

Query: 148 HGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           +G V    +  +     ++ET       +  A SS + V+  L++    QV ++  IAEV
Sbjct: 431 NGSVTLEVEGDKVGVSAVAETNTLLVRSSAQAWSSIRDVIERLDVM-PMQVHIEAQIAEV 489

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRF--- 254
                 + G       + + P  +      G   + G        G  +  G+   F   
Sbjct: 490 TLTGQLEYGVNWYFENAVNAPVNADGTGGAGLPSAAGRGIWGDVSGSVTNNGLAWTFLGK 549

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVT 308
           +   ++ AL+R T +R L  P++   +   A+   G +    + S +TG       +SV 
Sbjct: 550 NAAAIISALDRVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQ 609

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGVNAGDMPSYRVRKA 356
             D GV+L   P V   G + L I  EVS P                +A        R+ 
Sbjct: 610 YIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTSASTTTVNSAACNVDINTRRV 669

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T   + +G TI+LAGL+ D       G+P+LSK+P++GALF     N++  E+ +  TP
Sbjct: 670 KTEAAVQNGDTIMLAGLIDDSTSDGSAGLPILSKLPVVGALFGRKTQNKDRREVIVLITP 729

Query: 417 FLVK-PVAMRDLS 428
            +V+ P   R+L+
Sbjct: 730 SIVRNPQEARNLT 742


>gi|289663703|ref|ZP_06485284.1| general secretion pathway protein D [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 768

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/331 (24%), Positives = 134/331 (40%), Gaps = 48/331 (14%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            +  + +++  D V +            AV  + T L +S    +  SS + V+  L++ 
Sbjct: 432 GNGAVTLDVSGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 478

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFG---- 235
              QV ++  +AEV        G               +  G+  G     A+  G    
Sbjct: 479 -PMQVHIEAQVAEVNLTGDLSYGVNWYFENSVNAAADSATNGTGIGVGAGLASAAGRNIW 537

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G    + G+  +       +   +++AL++ T +R L  P++   +   A+   G +   
Sbjct: 538 GDIAGKVGEGGLAWSFLGKNAAAIINALDKVTNVRLLQTPSVFVRNNAEATLNVGSRIAI 597

Query: 296 KTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---------- 339
            + S +TG       +SV   D GV+L   P V   G + L I  EVS P          
Sbjct: 598 NSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSPGDRPTACQSA 657

Query: 340 VIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              +NA         R+  T   + SG TI+LAGL+ D       G+P LSK+P++GALF
Sbjct: 658 TATINAAACNVDINTRRVKTEAAVQSGDTIMLAGLINDSTTDGSNGVPFLSKLPVVGALF 717

Query: 399 RNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
                N    E+ +  TP +V+ P   R+L+
Sbjct: 718 GTKSRNSSRREVIVLITPSIVRNPQEARNLT 748


>gi|28199566|ref|NP_779880.1| fimbrial assembly protein [Xylella fastidiosa Temecula1]
 gi|182682302|ref|YP_001830462.1| type IV pilus secretin PilQ [Xylella fastidiosa M23]
 gi|28057681|gb|AAO29529.1| fimbrial assembly protein [Xylella fastidiosa Temecula1]
 gi|182632412|gb|ACB93188.1| type IV pilus secretin PilQ [Xylella fastidiosa M23]
          Length = 636

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 105/258 (40%), Gaps = 28/258 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------TGSSSGPSKSFAA 232
              DQV ++  I        + +G +  +                   GSS+  ++    
Sbjct: 370 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTAGSSTSATRGLNV 429

Query: 233 DFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           D GG   +        +   +  +F+ +  L AL++ +    ++ P +   + +      
Sbjct: 430 DLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIKQ 489

Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIG 342
           G +  Y T++          +V   +  + L  TPT+ +  R+ L +     E+ + +  
Sbjct: 490 GKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITI 549

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            N G +P+   R+ +T V +  G T+V+ G+ +   +     +P L  +P LG LF+   
Sbjct: 550 ANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRG 609

Query: 403 FNREETEIFIAATPFLVK 420
            ++++ E+ I  TP +++
Sbjct: 610 KDKQKAELLIFVTPKVLR 627


>gi|313672368|ref|YP_004050479.1| type ii and iii secretion system protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939124|gb|ADR18316.1| type II and III secretion system protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 425

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 90/420 (21%), Positives = 172/420 (40%), Gaps = 72/420 (17%)

Query: 54  LNKVIILQVP-VDVQDVLVSDPTKADVVVHSPRTMYLFGKNV-GQ-----ANVILIGHDG 106
           LN+++ L +   DV+DV        + +     T  + GK V G+      NV L+    
Sbjct: 21  LNRLVSLNMKNADVKDVF-------NALSLISNTNIVVGKGVEGKISVFLDNVTLMDAIK 73

Query: 107 KQMLNLDI--LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI------QDSQ 158
               N D+   +E +I ++             +++ +  + +    V +           
Sbjct: 74  SVTSNADLNYRVENNIVYIT------------KLDNIGQSTITSDNVESYFFKPKYMKLD 121

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--------------EDQVTLKVTIAE 204
           +   +   FLS +G     ++S+  ++     A                 Q+ ++  I  
Sbjct: 122 QFEGIINNFLSSTGGKMVIDNSTGTIIITDTKANLKYLKDLIAKIDQPSQQIMIEAKIVR 181

Query: 205 VRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
             ++  K +G Q  +                G+ + P++++  +     V+  G  +  G
Sbjct: 182 TTKNAGKDLGIQWGVNVNDRTSKNFPYSVQVGAGADPNRNYIVNLPISDVARAGIGAGVG 241

Query: 250 VL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           V      + F     L+ALE     + +  P +  ++ Q A   SG +  ++   +ST  
Sbjct: 242 VTLGNFNNTFVLNAKLNALETKGEAKVVHSPKILTMNNQKAKLESGEEIRFRETKTSTTT 301

Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
                 +   +   VL  TP +L+ G I L +  E+SE     +  ++P+    KA+T V
Sbjct: 302 TTQEIEIQKDEAKTVLDITPQILNDGNILLNLAVELSEFDWTKSVDNIPAKNKNKAETQV 361

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G T+++ GL K+++ + +  +PLLSKIP+LGALFRN     E  E+ I  TP +++
Sbjct: 362 ILKDGETLIIGGLKKENVFKNEAAVPLLSKIPLLGALFRNKSSGEELNELLIFVTPKIMR 421


>gi|121593092|ref|YP_984988.1| general secretion pathway protein D [Acidovorax sp. JS42]
 gi|120605172|gb|ABM40912.1| general secretion pathway protein D [Acidovorax sp. JS42]
          Length = 781

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 108/284 (38%), Gaps = 35/284 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+     QV ++  I EV    + + G Q      + G +     +        
Sbjct: 423 RAVIDKLD-GRRAQVLIESLIVEVSASKVAEFGIQWQGVLGNYGSTLGVLGNNSSVAGRN 481

Query: 242 GGDFSVKGVLDRFS------------------------FETVLHALERATAIRTLAEPTL 277
             D ++       +                           + + LE       L+ P L
Sbjct: 482 ILDLALAAATGNVTSIANAKPAAGMNLAVAPRINGKYYLGALANFLENTGDANVLSTPNL 541

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRI 328
             +  + A    G    + T S +            T+V   D G++L   P +   G +
Sbjct: 542 LTLDNEEAQIIIGNNVPFVTGSYANTGGSGGAVNPFTTVERKDVGLMLRVRPQINENGTV 601

Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            L +  EVS+      +  + PS   R  ++TV +  G  IV+ GLL+D+    ++ +P+
Sbjct: 602 KLTMYQEVSKVAESTLSNANGPSTSKRSIESTVLVDDGSVIVIGGLLEDNYALGQDKVPV 661

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +  +P++G LFRN +  R++T + +   P +++  A  D    D
Sbjct: 662 MGDLPVVGGLFRNEKRTRQKTNLMVFLRPMVIRDSATSDALMVD 705


>gi|332527680|ref|ZP_08403723.1| general secretion pathway protein D [Rubrivivax benzoatilyticus
           JA2]
 gi|332112080|gb|EGJ12056.1| general secretion pathway protein D [Rubrivivax benzoatilyticus
           JA2]
          Length = 388

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 117/313 (37%), Gaps = 50/313 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPS------ 227
           + ++  L+     QV ++  I EV  D   + GFQ           TG   G +      
Sbjct: 42  RTMIEQLDSR-RAQVYIESLIVEVAGDNAAEFGFQWQGLIGKDGDKTGLFGGTNFSNNNG 100

Query: 228 -------KSFAADFGGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTL 277
                   + AA      VS G   +V  +      ++   + + L+  T    ++ P L
Sbjct: 101 SGNILNITTAAASGSASGVSLGEGLNVGILRRYGGTYALGALANLLQSQTKTNIVSTPNL 160

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGL 330
             +  + A    G    + T   +   T       ++   D G+ L   P +   G + +
Sbjct: 161 ITLDNEEAKIVVGENVPFITGQYTNTGTATTSPFQTIERKDVGITLRIRPQIGESGTVRM 220

Query: 331 RIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            I  E S  +     G     PS   R  ++ V +  G  IVL GL++D   + K  +PL
Sbjct: 221 TIYQEQSSVLSTATVGTTNAGPSTTKRSIESQVVVEDGQIIVLGGLVQDSYVEEKSKVPL 280

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  IP LGALFR+    ++ T + +       +PV MRD           D       +R
Sbjct: 281 LGDIPGLGALFRSESRTKKRTNLMVFL-----RPVVMRD----------ADSTVRLSLDR 325

Query: 448 VNKIYGPKEASEV 460
            ++I   +E ++ 
Sbjct: 326 YDQIRARQEGAQP 338


>gi|123443548|ref|YP_001007521.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090509|emb|CAL13378.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 648

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 99/253 (39%), Gaps = 12/253 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGK 237
            +V+  L++    QV ++  I E +      +G Q +              S   +    
Sbjct: 340 DQVIERLDVR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGANFLQKPNSIQTNNNSG 398

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                    +     + +++ +  AL   +    LA P++  +    A F  G +    T
Sbjct: 399 NPIPMMIAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 458

Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PS 350
            + +T       S++    GV+L   P +     + L I+ EVS      +         
Sbjct: 459 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSV 518

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+V+ GLL   I ++   +PLL  IP +G LFR S+   E++ +
Sbjct: 519 FNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQSKEKIEKSNL 578

Query: 411 FIAATPFLVKPVA 423
            +   P +++  +
Sbjct: 579 ILFIRPTILRETS 591


>gi|218782965|ref|YP_002434283.1| general secretion pathway protein D [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764349|gb|ACL06815.1| General secretion pathway protein D [Desulfatibacillum alkenivorans
           AK-01]
          Length = 716

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 132/349 (37%), Gaps = 43/349 (12%)

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR-TIQDSQRAVELSETFLSQSG 172
           + ++   A   + + + +       +  ++  V+   V+ +   +  ++ +         
Sbjct: 325 VYLQNATAEEVVKVLQALPGKQTDTKNKAEAPVVSKDVQISADKATNSIIIVA------- 377

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--- 229
            ++      K V+  L+I     V ++  I EV  D   ++G +  +  +          
Sbjct: 378 -DKEDFKVLKDVIEKLDIP-RSMVYIEALIMEVSTDKAFELGVEWRLGDNFEVNGDQAVG 435

Query: 230 -----------------FAADFGGKFVSEGGDFSVK--------GVLDRFSFETVLHALE 264
                              A+           FS+         G +   +   V+ A +
Sbjct: 436 WAGSGGAGSEGAYTLFPTTAEIASGVAGFPTAFSMGVIGENIKIGDIYFPTLGAVMRAYK 495

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTP 320
             + +  L+ P + A + + +    G    Y T     SSS   TS    D GV L  TP
Sbjct: 496 NDSDVHILSAPHILATNNEESEIYVGKNVPYVTRQDTSSSSVDYTSYEYRDVGVTLKITP 555

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            +     + L +  EV+  +        P+   RKADTTV +  G TIV+ GL+ +  + 
Sbjct: 556 QISQERLVRLDVFQEVTRLIETAGTTTQPTTYKRKADTTVIVKDGNTIVIGGLIDESTEG 615

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
               +P L  IP LG  FR+    RE+T +++  TP +++ P   +++S
Sbjct: 616 GTYKVPCLGDIPWLGWAFRSKTEKREKTNLYVFLTPRIIQTPTEAKEIS 664


>gi|47155035|emb|CAE85234.1| GspD, hypothetical type II secretion protein [Escherichia coli]
          Length = 616

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 246 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562


>gi|326562497|gb|EGE12814.1| type IV pilus secretin PilQ [Moraxella catarrhalis 103P14B1]
 gi|326572679|gb|EGE22668.1| type IV pilus secretin PilQ [Moraxella catarrhalis CO72]
 gi|326574278|gb|EGE24226.1| type IV pilus secretin PilQ [Moraxella catarrhalis 101P30B1]
          Length = 473

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 29/299 (9%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           T  + G + + + +    + + T + Q      AN   K ++  ++I   +QV ++  I 
Sbjct: 182 TTAVRGTLLSERGTVTVDKRTNTLIIQDVPASVAN--IKALIERIDIP-VEQVMIEARIV 238

Query: 204 EVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGG--------DFSVKGVL 251
               +  +++G      G +     G S+        + V+ GG        D  V   +
Sbjct: 239 SANENFGRKLGVSFGAHGQNGKVHYGGSQGSLWAMRQEGVAAGGHQNSHLNVDLGVDNAM 298

Query: 252 DRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            R +F          +  L A++       ++ P +     Q+A  +SG Q  Y+  + S
Sbjct: 299 GRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHS 358

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            GA++    +  ++L  TP +   G+IGL++  +   PV  +      + +    +T V 
Sbjct: 359 -GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL---GHIAIQEDAIETNVI 414

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ I  TP LV+
Sbjct: 415 IEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473


>gi|254558682|ref|YP_003065777.1| General secretion pathway protein D [Methylobacterium extorquens
           DM4]
 gi|254265960|emb|CAX21710.1| putative General secretion pathway protein D [Methylobacterium
           extorquens DM4]
          Length = 794

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 126/295 (42%), Gaps = 22/295 (7%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A E + + +  + RNQY      +++  L+ A   QV L+  IAEV  +   Q G Q  +
Sbjct: 471 ADEANNSLVISATRNQYDKIL--RILGRLD-AMPTQVLLETVIAEVTLNNELQFGVQWFL 527

Query: 220 TGSSS-------GPSKSFAADFGGKFV----SEGGDFSVKGVLDRFSFETVLHALERATA 268
             S S         ++S A    G       +  G      +L+   F  VL+AL+  T 
Sbjct: 528 KNSGSRFNLAQADTNRSVAQGTSGTDALIKAAVRGVPGFNYLLNASDFNVVLNALQGVTR 587

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPT 321
           +  ++ P +T +  ++A    G Q      S  +           +   D GV+L  TP 
Sbjct: 588 VNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVILSVTPR 647

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           V   G + L I  EVS+ V    +  + P+ R R+  T+V +  G ++ + G++++  Q 
Sbjct: 648 VNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAVNDGHSLAIGGMVQEKAQI 707

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
             E +P+L  +PI+G  FRN    R  TE+ +   P +++     D    D    
Sbjct: 708 TNESVPVLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEADRIAEDFRQQ 762


>gi|288818949|ref|YP_003433297.1| putative type IV pilus biogenesis protein [Hydrogenobacter
           thermophilus TK-6]
 gi|288788349|dbj|BAI70096.1| putative type IV pilus biogenesis protein [Hydrogenobacter
           thermophilus TK-6]
 gi|308752535|gb|ADO46018.1| type II and III secretion system protein [Hydrogenobacter
           thermophilus TK-6]
          Length = 592

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 112/265 (42%), Gaps = 38/265 (14%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSI------------TGSSSGPSKSFAADFGGKFV 239
              QV ++  I EVR   L+++G   ++             G+  G +   A   G  FV
Sbjct: 329 SPVQVKIEARIVEVREQALRELGINWNVLLSQARVPQFWQGGAGQGANIGVAPAPGTIFV 388

Query: 240 ---------------------SEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTL 277
                                + GG F+        +     L ALER   I+ +A+PT+
Sbjct: 389 PPDPTSVGPRSPIYYTPGLSQTPGGIFAFSYQKGMLNALNLRLSALERIAMIKNIAKPTV 448

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
             ++ Q A+   G Q  Y+T   + GA   ++   D  + L  TP V   GRI L I  +
Sbjct: 449 VTVNAQKATIKQGVQIPYQTTVVAGGAQAANIQFKDVVLQLDVTPVVSPDGRILLDINLK 508

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
              P  G      P+   ++A T V +  G T+V+ G++ +   +  EG+P L ++P+L 
Sbjct: 509 RDTP--GEQTPQGPAINTKEASTKVVVNDGDTLVIGGIIDNQETKTNEGLPGLVRVPVLK 566

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            LF      + ++E+ I  TP LV+
Sbjct: 567 WLFGQESSQKIQSELLIFLTPVLVR 591


>gi|15642863|ref|NP_227904.1| comE protein, putative [Thermotoga maritima MSB8]
 gi|4980577|gb|AAD35182.1|AE001695_8 comE protein, putative [Thermotoga maritima MSB8]
          Length = 1285

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 114/262 (43%), Gaps = 6/262 (2%)

Query: 161  VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
            V+    F+  +G ++        ++  L    + Q+ +   I  V R ++ ++  +  + 
Sbjct: 1029 VDSLNNFMVVTGISETIKRELDNIIEKLKKPTK-QIEISAKI--VDRSLIDRLSKETGLE 1085

Query: 221  GSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             +    +   +       V++  DF  + G +   +        +  T    LA P +  
Sbjct: 1086 LTGENVNVGSSGAEISFSVTDYLDFEKIFGEILNNTLSLQFSDQKTNTLDDILASPRIVT 1145

Query: 280  ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
             SG+ A    G +  Y T ++  G   V   + G+ L  TP V S   I L +  + SEP
Sbjct: 1146 TSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELDLFVKASEP 1205

Query: 340  VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               +N  ++P  R R+A T + + +G TI + GL+++     +  +P L  +P++G  FR
Sbjct: 1206 GNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLPFLGDLPVIGQFFR 1263

Query: 400  NSRFNREETEIFIAATPFLVKP 421
                N+E+ ++ I  T  +V+P
Sbjct: 1264 TKSENKEKRDLVIFLTVRVVEP 1285


>gi|262373636|ref|ZP_06066914.1| general secretion pathway protein D [Acinetobacter junii SH205]
 gi|262311389|gb|EEY92475.1| general secretion pathway protein D [Acinetobacter junii SH205]
          Length = 709

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 112/334 (33%), Gaps = 49/334 (14%)

Query: 130 FIADSNIRVEMVSDTVVLHGMVR-TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
            +A   +  + V   +   G V    + +   +  +   + Q           +K+++LL
Sbjct: 387 RLAGGELSADNVGGVLSARGTVSIDPRTNTLIINDTSQKIDQ----------IRKMIDLL 436

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------------- 228
           +++   QV ++  I     D  K++G +  I       +                     
Sbjct: 437 DVS-VKQVMIEARIVRASTDFTKEMGVKWGILSQGIASNNDLLVGGSDTTLWNLREPTAD 495

Query: 229 --------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                         +   + G               L  F  +  L A++       ++ 
Sbjct: 496 SETGGWKYDIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVVST 555

Query: 275 PTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           P +     Q+A   SG Q  Y   T   +         D  + L  TP++   G++ +++
Sbjct: 556 PKVLTADKQAAKIESGTQIPYSSSTGGGANAVPKTEFIDATLSLDVTPSITPEGKVMMKL 615

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                 P      G + +      DT V + +G T+VL G+ + +    +  +P L  +P
Sbjct: 616 NITKDSPGTPTPTGQL-TINKNTIDTNVVVDNGETVVLGGIFEQENINSQTKVPFLGDLP 674

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +G LFR       + E+ I  TP +V     R+
Sbjct: 675 YVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRN 708


>gi|260767306|ref|ZP_05876246.1| MSHA biogenesis protein MshL [Vibrio furnissii CIP 102972]
 gi|260617713|gb|EEX42892.1| MSHA biogenesis protein MshL [Vibrio furnissii CIP 102972]
 gi|315181306|gb|ADT88220.1| MSHA biogenesis protein MshL [Vibrio furnissii NCTC 11218]
          Length = 547

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 120/322 (37%), Gaps = 32/322 (9%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           ++E     ++  G  +++  + +A  L+        R        ++ +N+     + QV
Sbjct: 222 QLEKAVSRLIGSGRGQSVVVTPQAGVLTLRAYPDEVRE------VRQFLNVSQQRMQRQV 275

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG------PSKSFAADFGGKFVSEGGDFSVKGV 250
            L+  I EV      Q G   S     +G         S +   G   +           
Sbjct: 276 ILEAKILEVTLTDGYQQGINWSNMSFGNGKVVIDRIGSSASTLPGLDAIGTLLSGQTNIT 335

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----------SS 300
           +   SF +VL  +     +  L+ P +TA + Q A    G    Y T           + 
Sbjct: 336 VSDGSFSSVLSFMATQGDLNVLSSPRVTAANNQKAVIKVGSDEYYVTDLSSVVGSGDNTQ 395

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR- 352
           +     +T    G+ L  TP +   G + L +   V        E     +   +P  R 
Sbjct: 396 AAPDVELTPFFSGISLDVTPQIDDKGNVLLHVHPSVIEVTQQDKEITYNDSTFTLPLARS 455

Query: 353 -VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
            +R++D+ +   +G  +V+ GL+K +       +P L  IP LG LFR++    E+TE+ 
Sbjct: 456 SIRESDSVIRAQNGDVVVIGGLMKTNTSNKVSKVPFLGDIPALGHLFRSTTELTEKTELV 515

Query: 412 IAATPFLVK-PVAMRDLSRPDD 432
           I   P +V      ++L R  D
Sbjct: 516 ILLKPTVVGVNTWQKELERSRD 537


>gi|91785421|ref|YP_560627.1| putative fimbrial type-4 assembly signal peptide, PilQ-like
           [Burkholderia xenovorans LB400]
 gi|91689375|gb|ABE32575.1| Putative fimbrial type-4 assembly signal peptide, PilQ-like protein
           [Burkholderia xenovorans LB400]
          Length = 567

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 90/238 (37%), Gaps = 11/238 (4%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------GKFVSEG 242
               QV ++  I E      + +G + S+  S++  S     D            F +  
Sbjct: 331 RPTRQVLIEARIVEGEHGFSRNLGVKLSMATSNADGSAKGLTDAAYDLSARPIAGFDAAT 390

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
              ++            L ALE       ++ P +       A    G +  Y+      
Sbjct: 391 AGLTLFAAGATRLLNIELSALEAQGRGEIVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQ 449

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           G + V      + L   P ++  GR+ L +           +AG  P+   +   T VE+
Sbjct: 450 GVSGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGEQTDAG--PAINTKHVQTRVEV 507

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             GGT+ + G+   D +     +PLL KIP+LGALFR+       +E+ +  TP +V+
Sbjct: 508 EDGGTVSIGGIYATDDRDDVTQVPLLGKIPVLGALFRHRAHRDRRSELAVFITPRVVQ 565


>gi|291612584|ref|YP_003522741.1| type IV pilus secretin PilQ [Sideroxydans lithotrophicus ES-1]
 gi|291582696|gb|ADE10354.1| type IV pilus secretin PilQ [Sideroxydans lithotrophicus ES-1]
          Length = 688

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 108/253 (42%), Gaps = 18/253 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-------------- 227
           +  +  L++    QV ++    E      + +G + S TG  S  +              
Sbjct: 434 RTFVKQLDVP-VRQVMIEARFVEAGETFNQTLGGRLSYTGPGSTVAGGGFAGPAGNRAAL 492

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            + +   G   V+ G   ++            L+A E     + +A P +       A+ 
Sbjct: 493 STTSLLPGAGSVTGGMTLNLFNAAATKVLTLELNASELDGTTKNIASPRVVTGDKTPATI 552

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
            SG +  Y   +SS GATSV      + L  TP +     +G+++   VS+  +G     
Sbjct: 553 ESGVEVPYLQATSS-GATSVAFKKAVLGLTVTPQITPDDHVGMKL--SVSQDTVGNIYSG 609

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +PS   +K DT V + +GGT+V+ G+   D    KE IPLL  IPILG LF+     + +
Sbjct: 610 VPSINTKKVDTQVLVDNGGTVVIGGVYTQDATDSKEQIPLLGDIPILGWLFKTDTIVKAK 669

Query: 408 TEIFIAATPFLVK 420
            E+ +  TP +VK
Sbjct: 670 KELLVFITPKIVK 682


>gi|148254077|ref|YP_001238662.1| putative general secretion pathway protein D [Bradyrhizobium sp.
           BTAi1]
 gi|146406250|gb|ABQ34756.1| Putative general secretion pathway protein D [Bradyrhizobium sp.
           BTAi1]
          Length = 780

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 120/297 (40%), Gaps = 32/297 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-------SKSFAADFGGKFVSEGG 243
             + QV +  TIAEV  +     G Q  +T  + G          + +        S  G
Sbjct: 492 RPQLQVAIDATIAEVTLNDNLNYGVQAYLTSKNLGLRPDQGSLLNTTSTSAPATVASAAG 551

Query: 244 DFS---VKGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
             +   +      F+F          +L AL   T ++ L+ P+L  I  Q+A+   G Q
Sbjct: 552 TITNAFLNRAFPGFNFLIGSESQPSAILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQ 611

Query: 293 HLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
               T S      ++T   ++   + G++L   P V   G + L I+ E+S         
Sbjct: 612 VPVSTGSATVLTTNNTVVNTIDYRNTGIILRVAPRVNENGNVRLEIEQEISNVSPQTANS 671

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P+   RK  + V + SG T++LAGL+ +  Q  + G+P + +IP+LG LF N+   R 
Sbjct: 672 LTPTVAQRKVKSAVAVASGQTVLLAGLISETHQGTRNGVPGVDQIPVLGDLFSNNDRTRG 731

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
            TE+ I   P +++           D + V ++ ++     +  +          G+
Sbjct: 732 RTELIIFIRPQIIRDG--------TDAHYVAEELRSKLRGTIRPVSTSALQPPRAGR 780


>gi|17223826|gb|AAL10693.1| hypothetical type II secretion protein [Escherichia coli ETEC
           H10407]
          Length = 616

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 246 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562


>gi|109896501|ref|YP_659756.1| pilus (MSHA type) biogenesis protein MshL [Pseudoalteromonas
           atlantica T6c]
 gi|109698782|gb|ABG38702.1| pilus (MSHA type) biogenesis protein MshL [Pseudoalteromonas
           atlantica T6c]
          Length = 550

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/257 (25%), Positives = 106/257 (41%), Gaps = 23/257 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGKFVSEGGDFSVKG 249
           + QV L+  I EV      Q G   +   ++SG +    S  A   G  +S         
Sbjct: 278 QRQVILEARILEVSLSDGYQQGINWTEVLANSGSTDFQFSTTAGSLGDAISASLGGITSL 337

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------- 301
                 F  VL+ L+    ++ L+ P +TAI+ Q A    G    + T  SS        
Sbjct: 338 SFVNKDFSGVLNLLQTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSQSTVTAAT 397

Query: 302 ---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVN----AGDMP 349
              T    +T    G+ L  TP + + G + L +   V      E V+ +N       + 
Sbjct: 398 SSTTPNIELTPFFSGIALDVTPQIDAQGGVLLHVHPSVIETEEQEKVVTLNEEQFVLPLA 457

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +  +R++DT +   SG  +V+ GL++  I + +   PLL  IP+LG LF+N +    + E
Sbjct: 458 ASNIRESDTIIHARSGEIVVIGGLMQSIISETESKTPLLGDIPLLGNLFKNRQETETKKE 517

Query: 410 IFIAATPFLVKPVAMRD 426
           + I   P +V     R 
Sbjct: 518 LVILLRPTVVGADTWRQ 534


>gi|194364334|ref|YP_002026944.1| general secretion pathway protein D [Stenotrophomonas maltophilia
           R551-3]
 gi|194347138|gb|ACF50261.1| general secretion pathway protein D [Stenotrophomonas maltophilia
           R551-3]
          Length = 733

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/315 (25%), Positives = 129/315 (40%), Gaps = 27/315 (8%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
             V +   V   +    AVE + T L +S    +   S ++V+  L++    QV ++  +
Sbjct: 408 GNVSVSLEVEGDRVGVSAVEETNTLLVRSTPQAW--RSIREVIEKLDVM-PLQVHIEAQV 464

Query: 203 AEVRRDILKQIGFQHSITGSSSG-------PSKSFAADFGGKFVSEGGDFS----VKGVL 251
           AEV  +   + G       + +G          +  A  GG + S  G  +    +    
Sbjct: 465 AEVALEGDLKYGVNWFFDNAVAGRALTGALAGVTLPAAAGGSWSSLAGAATGGEGLGWAF 524

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TS 306
              +   V+ AL++ T +R L  P++   +   A+   G +    T + +TG      +S
Sbjct: 525 TGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGDKVPINTTTVNTGIGTSSYSS 584

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAGDMPSYRVRKADTTV 360
           V   D GV+L   P V   G + L I  EVS                 P    +K  T  
Sbjct: 585 VQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASNVPENCNPQERNCNPRISTKKLSTEA 644

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + SG TI+LAGL+ D       GIP LS+IP++GALF         +E+ +  TP +V+
Sbjct: 645 AVQSGDTIMLAGLITDTGTDGSSGIPGLSRIPVVGALFGQKSRTSRRSEVIVLLTPSIVR 704

Query: 421 PVAMRDLSRPDDHYS 435
               ++     D YS
Sbjct: 705 NS--QEARNLTDEYS 717


>gi|18139873|gb|AAL60184.1|AF426313_4 hypothetical type II secretion protein GspD [Escherichia coli]
          Length = 616

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 246 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562


>gi|1246517|emb|CAA60131.1| pulD-like [Escherichia coli]
          Length = 596

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 106/297 (35%), Gaps = 30/297 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+I    QV ++  IAE++      +G Q     +      S          + 
Sbjct: 275 ENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTGLPITTMVQTR 333

Query: 242 GGDF-------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             +               +     + ++  +L AL  ++    LA P++  +    A+F 
Sbjct: 334 QNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFN 393

Query: 289 SGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---I 341
            G +       +T S      +V     G+ L   P +     + L I+ EVS      +
Sbjct: 394 VGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAV 453

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                   ++  R     + + +  T+V+ GLL   I+  +  +PLL  IP+LG LFR  
Sbjct: 454 ATTTDLGATFNTRTVTNAMLVGNCETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAK 513

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
                +  + +   P +++           D +      K   FN+       KE +
Sbjct: 514 SEQTAKRNLMLFIRPTIIR---------ERDGFRHASAEKYQSFNQEQVQSRGKETT 561


>gi|126176391|ref|YP_001052540.1| general secretion pathway protein D [Shewanella baltica OS155]
 gi|125999596|gb|ABN63671.1| general secretion pathway protein D [Shewanella baltica OS155]
          Length = 705

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/283 (22%), Positives = 110/283 (38%), Gaps = 46/283 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFV 239
           + V+N L+I    QV ++  I EV        G Q +          +     G  G  V
Sbjct: 337 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWASKAGGGTQFNNLGPTIGEVGAGV 395

Query: 240 ------------------------------------SEGGDFSVKGVLDRFSFETVLHAL 263
                                               + G    +   +    F  ++ A+
Sbjct: 396 WAAQTEKASQTCTGSGDNKTCTDNPDKRGDVTLLAQALGKVNGMAWGVAMGDFGALIQAV 455

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHF 318
              T    LA P++T +  Q ASF  G +    T S+++ +      +V   + GV L  
Sbjct: 456 SSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERKEVGVKLKV 515

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL GL+ +++
Sbjct: 516 VPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEV 573

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           Q+  + +P L  IPI+G LF++S   + +  + I   P +++ 
Sbjct: 574 QESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKPTIIRD 616


>gi|113968501|ref|YP_732294.1| general secretion pathway protein D [Shewanella sp. MR-4]
 gi|114045664|ref|YP_736214.1| general secretion pathway protein D [Shewanella sp. MR-7]
 gi|113883185|gb|ABI37237.1| general secretion pathway protein D [Shewanella sp. MR-4]
 gi|113887106|gb|ABI41157.1| general secretion pathway protein D [Shewanella sp. MR-7]
          Length = 700

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 109/280 (38%), Gaps = 43/280 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394

Query: 236 -------GKFV----------------------SEGGDFSVKGVLDRFSFETVLHALERA 266
                  G  V                      + G    +   +    F  ++ A+   
Sbjct: 395 WQAQGEDGTTVCTENGTCTENPDSRGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVSAD 454

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPT 321
           T    LA P++T +  Q ASF  G +    T S+++        +V   + GV L   P 
Sbjct: 455 TNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVVPQ 514

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL GL+ +++Q+ 
Sbjct: 515 INEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEVQES 572

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            + +P L  IP+LG LF++S   + +  + I   P +++ 
Sbjct: 573 VQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIRD 612


>gi|117918609|ref|YP_867801.1| general secretion pathway protein D [Shewanella sp. ANA-3]
 gi|117610941|gb|ABK46395.1| general secretion pathway protein D [Shewanella sp. ANA-3]
          Length = 702

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 110/282 (39%), Gaps = 45/282 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKADGGTQFNNLGPTIGEIGAGI 394

Query: 236 -------GKFVSEGGDFSVKGV------------------------LDRFSFETVLHALE 264
                  G +++      V G                         +    F  ++ A+ 
Sbjct: 395 WQAQDKEGTYITNPSTGEVIGKNPDTKGDVTLLAQALGKVNGMAWGVAMGDFGALVQAVS 454

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFT 319
             T    LA P++T +  Q ASF  G +    T S+++        +V   + GV L   
Sbjct: 455 ADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 514

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL GL+ +++Q
Sbjct: 515 PQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEVQ 572

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  + +P L  IP+LG LF++S   + +  + I   P +++ 
Sbjct: 573 ESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIRD 614


>gi|320155211|ref|YP_004187590.1| MSHA biogenesis protein MshL [Vibrio vulnificus MO6-24/O]
 gi|319930523|gb|ADV85387.1| MSHA biogenesis protein MshL [Vibrio vulnificus MO6-24/O]
          Length = 531

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 69/280 (24%), Positives = 109/280 (38%), Gaps = 29/280 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ + +     + QV L+  I EV      Q G   S   +S G S S   +  G  V  
Sbjct: 242 RQFLGISQERMQRQVILEAKILEVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLP 301

Query: 242 GGD-------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           G D             +   SFE VL  +     +  L+ P +TA + Q A    G    
Sbjct: 302 GLDAIGSLLGGQTNVTISDGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQY 361

Query: 295 YKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341
           Y T  SS              ++T    G+ L  TP +   G + L +     EV E   
Sbjct: 362 YVTALSSNVGNDDKSKAVPEVTLTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETK 421

Query: 342 GVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            +N G         +    +R++D+ +    G  +V+ GL+K +  +    +P    IP 
Sbjct: 422 QLNLGGDFQNVTLPLAKSSIRESDSVIRARDGDVVVIGGLMKSNTIERVSKVPFFGDIPA 481

Query: 394 LGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
           LG LFRN+    ++TE+ I   P +V      ++L R  D
Sbjct: 482 LGHLFRNTSNLTQKTELVILLKPTVVGVNTWQKELERSRD 521


>gi|3978475|gb|AAC83352.1| outer membrane secretion protein Q [Pseudomonas alcaligenes]
          Length = 649

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 134/319 (42%), Gaps = 37/319 (11%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ ++++  L++    QV ++  I E+  DI   +G Q ++  +  G       +FG   
Sbjct: 334 ATLEEIVRNLDVP-RAQVMVEAAIVEISGDISDALGVQWAV-DARGGTGGLGGVNFGNTG 391

Query: 239 VSEGG-----------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           +S G                  D ++ G+    +F  ++ AL   +    L+ P+L  + 
Sbjct: 392 LSVGTVLKAIQNEEIPDDLTLPDGAIIGIGTE-NFGALITALSANSKSNLLSTPSLLTLD 450

Query: 282 GQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            Q A    G    ++T S +T A       T++   D GV L  TP +     + L ++ 
Sbjct: 451 NQEAEILVGQNVPFQTGSYTTDASGANNPFTTIEREDIGVTLKVTPHINDGATLRLEVEQ 510

Query: 335 EVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           E+S   P  GVNA  +      R   + +    G  IVL GL++DD+      +PLL  I
Sbjct: 511 EISSIAPSAGVNAQAVDLVTNKRSIKSVILADDGQVIVLGGLIQDDVTSTDSKVPLLGDI 570

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS------VEDDAKAFFF 445
           P++G LFR+++    +  + +   P +V+  A    +     YS       ++D  +   
Sbjct: 571 PLIGRLFRSTKDTHVKRNLMVFLRPTIVRDRAGM-AALSGKKYSDISVLGADEDGHSSLP 629

Query: 446 NRVNKIYGPKEASEVEGQN 464
               +++    A  V+ ++
Sbjct: 630 GSAERLFDKPGAGAVDLRD 648


>gi|294651771|ref|ZP_06729069.1| type IV pilus assembly protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822328|gb|EFF81233.1| type IV pilus assembly protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 725

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 98/281 (34%), Gaps = 38/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228
           +K+++LL+++   QV ++  I     D  +++G +  I       +              
Sbjct: 446 RKMVDLLDVS-VKQVMIEARIVRASTDFTREMGVKWGILSQGVTRNNDLLVGGSDTTLWN 504

Query: 229 ---------------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                +   D G               L  F  +  L A++   
Sbjct: 505 LREPKKDSETGGWKYEIERPDNLNVDLGATTAGASRIAFGLISLSDFMLDLELSAVQADG 564

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               ++ P +     Q A   SG +  Y   T + +         D  + L  TP++   
Sbjct: 565 YGEVISTPKVMTADKQPAKIESGTKIPYSSSTGAGANAVPKTEFIDATLSLDVTPSITPD 624

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G++ +++      P      G + +      DT V + +G T+VL G+ + +    +  +
Sbjct: 625 GKVMMKLNITKDAPSNPTPTGQL-TISKNSIDTNVLVDNGETVVLGGIFEQENISSQIKV 683

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P L  +P +G LFR       + E+ I  TP +V     R+
Sbjct: 684 PFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTRN 724


>gi|289207464|ref|YP_003459530.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. K90mix]
 gi|288943095|gb|ADC70794.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. K90mix]
          Length = 710

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 118/300 (39%), Gaps = 32/300 (10%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   + + S      + T L Q  +++  +   ++++  L++    QV ++  I     
Sbjct: 416 TGQFLSDRGSITIDSRTNTLLVQDTQSRIED--VRRLVQTLDVP-VQQVLIETRIVIAED 472

Query: 208 DILKQIGFQHSITG------------------------SSSGPSKSFAADFGGKFVSEGG 243
              +++G +  I+G                        S++G       D     +   G
Sbjct: 473 TFNRELGARFGISGTRGDRRTRVGGAGSIEGADAARDASTAGVGGIAIGDRLNSSLPASG 532

Query: 244 DFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           D    G+         +  L AL+       ++ P +   +GQ+AS   G +  ++  ++
Sbjct: 533 DAGRAGISLLRSGVLLDLELSALQVEGRGEIISSPRVITANGQTASIKQGEEIPFQEATA 592

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           S GATS    +  +    TP +   G + L I+    EP        +P    R+ +T V
Sbjct: 593 S-GATSTQFIEAVLSTEVTPQITPNGNVILDIRVTKDEPS-QREVLGVPGINKREVNTQV 650

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +G T+VL G+ + D +   E +P    IP LG LFRN      + E+ I  TP ++ 
Sbjct: 651 FVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLGNLFRNRSTENTKAELLIFVTPRVLD 710


>gi|262401919|ref|ZP_06078484.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC586]
 gi|262351891|gb|EEZ01022.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC586]
          Length = 567

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 104/264 (39%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  V+   L ++G +  +  ++   S              
Sbjct: 304 REIIESLDIP-VKQVQIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGL 362

Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +      +     F V  +      +  L AL+  +    ++ P L
Sbjct: 363 LAEDEFPVDEFLNVNLAAASTNASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRL 422

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A    G +  Y   SSS  A++V+     + L  TP +    R+ L +     
Sbjct: 423 ITTNKQPAYIEQGTEIPYLESSSSG-ASTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQD 481

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LG
Sbjct: 482 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 541

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR +     ++E+ I  TP +V
Sbjct: 542 ALFRRTYEQMGKSELLIFVTPKVV 565


>gi|229525096|ref|ZP_04414501.1| MSHA biogenesis protein MshL [Vibrio cholerae bv. albensis VL426]
 gi|229338677|gb|EEO03694.1| MSHA biogenesis protein MshL [Vibrio cholerae bv. albensis VL426]
          Length = 554

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 109/275 (39%), Gaps = 37/275 (13%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---- 234
           ++V   L I+ +    QV L+  I EV      Q G   S   SS+G S +  +      
Sbjct: 256 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQD 315

Query: 235 --GGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
             G    S        G         V+   SF+ V+  +     +  L+ P +TA + Q
Sbjct: 316 SSGNPITSALPGLDAIGSLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQ 375

Query: 284 SASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR-- 331
            A    G    Y T  SS   T          ++T    G+ L  TP +   G + L   
Sbjct: 376 KAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVH 435

Query: 332 ---IQTEVSEPVIGVNAGDMP----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              I+ E    +I  N+ ++        +R++D+ +    G  +V+ GL+K +  +    
Sbjct: 436 PAVIEVEQQTKIITYNSQEITLPLARSSIRESDSVIRAKDGDVVVIGGLMKTNTIERVSK 495

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +P L  +P LG LFRN     ++TE+ I   P +V
Sbjct: 496 VPFLGDVPGLGNLFRNISNQTQKTELVILLKPTVV 530


>gi|237807143|ref|YP_002891583.1| general secretion pathway protein D [Tolumonas auensis DSM 9187]
 gi|237499404|gb|ACQ91997.1| general secretion pathway protein D [Tolumonas auensis DSM 9187]
          Length = 685

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 111/272 (40%), Gaps = 35/272 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++  L+I    QV ++  I E++       G Q + T  + G ++  A       V+ 
Sbjct: 352 ERIIAKLDIR-RAQVLVEAIIVEIQDGDTLNFGVQWANT--NGGGTQFTATGLPTTTVAN 408

Query: 242 GGD----------------FSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISG 282
             +                 S  G++  F   ++  ++ AL   T    LA P++  +  
Sbjct: 409 AANEWRNDGELSSTSTAALSSFNGLVAGFYEGNWAGLVTALSSNTKSNILATPSIVTLDN 468

Query: 283 QSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           + A+F  G +    T S S+ A    ++V     G  L  TP +     + L ++ EVS 
Sbjct: 469 KEAAFNVGQEVPVVTGSQSSTAGSVYSTVERKTVGTKLKVTPQINEGDSVLLEVEQEVSS 528

Query: 339 PVIGVNAGDMP---------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                +              ++  R    +V + SG T+VL GLL ++  +    +PLL 
Sbjct: 529 VASSSSTDSSSSSSNSSLGSTFNTRTVKNSVLVKSGETVVLGGLLSNNTSESVYKVPLLG 588

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            IPILG LFR +  +  +  + +   P +++ 
Sbjct: 589 DIPILGYLFRYNGTSTTKQNLMVFIHPTILRD 620


>gi|24371766|ref|NP_715808.1| general secretion pathway protein D [Shewanella oneidensis MR-1]
 gi|24345556|gb|AAN53253.1|AE015466_13 general secretion pathway protein D [Shewanella oneidensis MR-1]
          Length = 704

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 110/282 (39%), Gaps = 45/282 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 396

Query: 236 -------GKFVSEGGDFSVKGV------------------------LDRFSFETVLHALE 264
                  G +++      V G                         +    F  ++ A+ 
Sbjct: 397 WQAQDKEGTYITNPSTGEVIGQNPKTKGDVTLLAQALGKVNGMAWGVAMGDFGALVQAVS 456

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFT 319
             T    LA P++T +  Q ASF  G +    T S+++        +V   + GV L   
Sbjct: 457 ADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 516

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL GL+ +++Q
Sbjct: 517 PQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEVQ 574

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  + +P L  IPILG LF++S   + +  + I   P +++ 
Sbjct: 575 ESIQKVPFLGDIPILGHLFKSSSSKKTKKNLMIFIKPTIIRD 616


>gi|225848499|ref|YP_002728662.1| PilQ [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643373|gb|ACN98423.1| PilQ [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 604

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 24/251 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSG-------PSKSFAA 232
             Q++++  I ++    +K +G Q               I G++S        P  ++A 
Sbjct: 352 PYQISIEARIVQISSKNVKDLGIQWGGLASNIDNNNTKIIAGTNSTSYLANYRPGSAYAV 411

Query: 233 DFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           DF        G FS+  +L       +  L AL+     + L++P++  I G++A  + G
Sbjct: 412 DFPAVQSKIPGGFSLGFILGGTQNFLDIRLSALQSIGKSKILSKPSVITIDGETAEISQG 471

Query: 291 GQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
            +  Y T  ++ G T  SV+     + L+ TP   + G I + +      P         
Sbjct: 472 YEIPYTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDLIITQDIPDFKNLLLGN 531

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  + +   + V    G  +V+ G+L+        G+P L  IPILG LF+ +      T
Sbjct: 532 PPIQTKTVTSKVVAKDGSVVVIGGILEKTEDTQTSGVPGLMNIPILGNLFKENFKQDTST 591

Query: 409 EIFIAATPFLV 419
           E+ I  +P +V
Sbjct: 592 ELLIFLSPKIV 602


>gi|300696689|ref|YP_003747350.1| secretion type II protein related to gspD (secretin) protein
           [Ralstonia solanacearum CFBP2957]
 gi|299073413|emb|CBJ52927.1| secretion type II protein related to gspD (secretin) protein
           [Ralstonia solanacearum CFBP2957]
          Length = 754

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 83/395 (21%), Positives = 146/395 (36%), Gaps = 55/395 (13%)

Query: 53  GLNKVIILQVPVDVQ-DVLVSDPTKADVV------------VHSPRTMYLFGKNVGQANV 99
           GLN V    V  D +  V + + T A VV            V     + ++         
Sbjct: 206 GLNFVFDKDVRTDQKVTVFLRNSTVASVVNTVLLTNQLEQRVLDGNAILIYPNTP----- 260

Query: 100 ILIGHDGKQMLNLD-ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
                D + +     +L   D   +  TL+  +   +I V+   + +V+      I+ ++
Sbjct: 261 -AKQRDYQPLTVRTFVLSNSDAKDVANTLKTILKTRDIVVDEKRNMIVMRDTPDAIEAAE 319

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           + V + E                           E +V L+V I EV+R  L+ +G Q  
Sbjct: 320 KLVAVHEM-------------------------PEPEVMLEVEILEVKRSRLQDLGIQLP 354

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
              S +  + S         +       +   +   +    ++     T    LA P + 
Sbjct: 355 SQLSLTPLASSSGGTLTLDDLRHLNPTRIGATVSPLN----INVNAAVTDTNVLANPRVR 410

Query: 279 AISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
             + + A    G +    T +S+     A +V   D G+ L   PTV     + +RI  E
Sbjct: 411 TRNKEKARIQVGQRVPNVTTTSTATGFVAENVQYVDVGLKLEVEPTVTPDNEVTIRINLE 470

Query: 336 VSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           VS+ +  V             R A T + L  G   +LAGL++D+ +     +P L  IP
Sbjct: 471 VSDIISQVQTKSGSIAYEIGTRNATTLLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIP 530

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
            LG LF     N+ ++EI ++ TP +++P    +L
Sbjct: 531 ALGRLFGAQSDNKLKSEIVLSITPRVIRPAQRPNL 565


>gi|299768549|ref|YP_003730575.1| Type II secretory pathway, component HofQ [Acinetobacter sp. DR1]
 gi|298698637|gb|ADI89202.1| Type II secretory pathway, component HofQ [Acinetobacter sp. DR1]
          Length = 721

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 108/281 (38%), Gaps = 39/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           +K+++LL++    QV ++  I        K++G +  I       + +            
Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 501

Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                    D G    +    F +  + D F  +  L AL+   
Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSD-FMLDLELSALQADG 560

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325
               ++ P +     Q A   +G Q  Y++ ++S   ++   +  D  + L+ TP++   
Sbjct: 561 YGEVISTPKVMTADKQPAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 620

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G+I +++             G++      + +T V + +G T++L G+ +      +  +
Sbjct: 621 GKIQMKLDISKDSVAGAAPNGEL-ILNKNQINTNVLVNNGETVILGGVFEQTTTNSQTKV 679

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P    IP+LG LFR    + ++ E+ I  TP +V    +R+
Sbjct: 680 PFFGDIPVLGHLFRKDVKSDDKQELLIFVTPRIVNDTLVRN 720


>gi|260424842|ref|ZP_05733440.2| bacterial type II and III secretion system protein [Dialister
           invisus DSM 15470]
 gi|260403342|gb|EEW96889.1| bacterial type II and III secretion system protein [Dialister
           invisus DSM 15470]
          Length = 449

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 127/373 (34%), Gaps = 69/373 (18%)

Query: 89  LFGKNVGQANVILIGHD-----GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
           L  +  G   +I++G       G+   +  +    +   +   LR+     ++     ++
Sbjct: 104 LIAREEGST-LIVVGESAMKNGGRATKSYKLS-YAEAKEVAEGLRQLSDSVHVAYNQTAN 161

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            V+L G    I ++                          V+  L++  E QV ++  + 
Sbjct: 162 AVILSGTPLEIMETAA------------------------VLRSLDVP-EKQVKVEAEVI 196

Query: 204 EVRRDILKQIGFQHSITGSSSGP----------------------------------SKS 229
            V R   K++G        +                                        
Sbjct: 197 AVNRSHSKELGIDWDFKALTGSGEYRRESWNEQRYVTDDAGNIKYDKNGNPRMRNIEHNG 256

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           +       +       SV G      F   L+AL      R LA P +  ++G+ A    
Sbjct: 257 WNVKIPEGYAGISYGRSVAGHPYTAFFRANLNALVSTGKARILARPNVVTMNGREAEILI 316

Query: 290 GGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
           G +          G   T+    D G+ L +TP + + G I   +  EVS P + V    
Sbjct: 317 GNKIPVIVEHVDNGVRTTTTEYRDAGIKLTYTPRISADGEITANVNAEVSTPYL-VPEMR 375

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
                 R+A+T V L SG  + + GL+  +  +    +P+L  IP+LG LF++   + EE
Sbjct: 376 AYRIITRQANTLVRLRSGDMLTIGGLIDKEENKTFRKVPILGDIPLLGKLFQSKSRSVEE 435

Query: 408 TEIFIAATPFLVK 420
           +EI I     ++ 
Sbjct: 436 SEIVIIIKAEILD 448


>gi|149189158|ref|ZP_01867445.1| fimbrial assembly protein [Vibrio shilonii AK1]
 gi|148836912|gb|EDL53862.1| fimbrial assembly protein [Vibrio shilonii AK1]
          Length = 550

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 106/263 (40%), Gaps = 27/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K+++  L+I    QV ++  +  ++   ++++G +   T  +   +     +        
Sbjct: 288 KEIIASLDIP-VKQVQIEARVVTIKEGNIEELGIRWGYTSINGDTTIGSTIEGNLASSGI 346

Query: 242 GGD-----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           GG                        F V  +      +  L AL+  +    ++ P L 
Sbjct: 347 GGGEVDIDDFLNVNLGALSDNAASIAFQVASLGSNTLLDLELSALQSESKAEIISSPRLI 406

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
             + +SA    G +  Y   S+S+GAT+V      + L  TP +    R+ L +      
Sbjct: 407 TTNKKSAYIEQGTEIPY-LKSTSSGATAVEFKKAVLSLTVTPQITPDNRLILDLDVTQDR 465

Query: 339 P--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
              V+    G+  +   ++  T V +  G T+VL G+ +  +    + +P+L  IP LGA
Sbjct: 466 VGEVLKTLEGETVAIDTQRIGTQVLVNDGETVVLGGIFQHAMTSKVDKVPVLGDIPGLGA 525

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFR +  N  + E+ I  TP ++
Sbjct: 526 LFRRTYENIGKNELLIFVTPKII 548


>gi|269959332|ref|ZP_06173715.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835769|gb|EEZ89845.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 715

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 13/248 (5%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++  L++    QV L++TIAEV      + G + + +  +   S   A          GG
Sbjct: 461 LIAQLDVM-PKQVILEMTIAEVTMTDEFKFGVEWAFSNGNFSASTKDAFGLD----KVGG 515

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---TVSS 300
            F      D F     L A E    +  +++P+L    G  A+   G         T  S
Sbjct: 516 GFIKWMSGDDF---INLQAFESNNNVNIMSKPSLLVRDGVEANINVGTDIPVVGQTTTDS 572

Query: 301 STGAT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADT 358
           + G T SV     GV +  TPT+ + G + + I  E S  V G  +    PS   R   T
Sbjct: 573 NNGVTRSVEYRKTGVKVAVTPTINAQGIVSMVISQENSNQVDGGTSVEGNPSIFDRSITT 632

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V   SG T++L GL+ +++      +P L  +P++G LF     N+ +TE+ I  TP +
Sbjct: 633 EVVAESGQTVILGGLISENVTNNGSAVPFLGSLPVVGGLFGTKTDNKTKTELVIMVTPRI 692

Query: 419 VKPVAMRD 426
           V+  +  D
Sbjct: 693 VESSSQWD 700


>gi|291279696|ref|YP_003496531.1| general secretion pathway protein D [Deferribacter desulfuricans
           SSM1]
 gi|290754398|dbj|BAI80775.1| general secretion pathway protein D [Deferribacter desulfuricans
           SSM1]
          Length = 621

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 143/358 (39%), Gaps = 36/358 (10%)

Query: 97  ANVILIGHDGKQMLNLD-----ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            N +++      +  ++     + +  D + L   + +        VE + + ++L  + 
Sbjct: 228 TNTLIVAAKEDDINKIEYIINQLDVSNDNSALAPQVFKLKHVYATDVEGILNKLLLSNID 287

Query: 152 RTIQDSQRAVELSETFLSQ--SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
              +   R+   ++   +   +  ++   S+ ++++  L+     QV ++  + E   + 
Sbjct: 288 PKKKKVVRSKVAADKSTNSIIALGDKELYSNIQQLLEKLDKP-RKQVYVEALVLETSIEK 346

Query: 210 LKQIGFQHSITGSSS-----------------------GPSKSFAADFGGKFVSEGGDFS 246
               G +    G +                        G S +FAA  GG   +  G+  
Sbjct: 347 GADFGVEWLAGGGNENFAGSAGFLNNGALTNFQSPVLEGNSPNFAALPGGFTAAILGNVI 406

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SST 302
               +   +   +++ ++  +AI  ++ P +  +  + A    G    + T +    ++ 
Sbjct: 407 TYEGVKFPTLSALVNFVKTDSAINIISNPQILTLDNEEAEVFVGENRPFLTSTKFDANNN 466

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVE 361
              S    D G+ L  TP +     + L+I+ EV + +    N    P    RK  T VE
Sbjct: 467 PVQSYDYRDVGIRLKITPHISDNKTLTLKIEQEVKKVIANAGNDLTAPITLTRKTKTMVE 526

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  G T+V++GL+ DD       +P LSKIPILG LF++   +R +T + +  T  ++
Sbjct: 527 LIDGYTMVISGLIGDDTSVSNSEVPFLSKIPILGWLFKSRNRSRSKTNMMVFITAKVI 584


>gi|332160534|ref|YP_004297111.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664764|gb|ADZ41408.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 648

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 100/253 (39%), Gaps = 12/253 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----SKSFAADFGGK 237
            +V+  L+I    QV ++  I E +      +G Q +            + S   +    
Sbjct: 340 DQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKTNSIQTNNNSG 398

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                    +     + +++ +  AL   +    LA P++  +    A F  G +    T
Sbjct: 399 NPIPMMMAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 458

Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PS 350
            + +T       S++    GV+L   P +     + L I+ EVS      +         
Sbjct: 459 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSV 518

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+V+ GLL   I ++   +PLL  IP +G LFR S+   E++ +
Sbjct: 519 FNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQSKEKIEKSNL 578

Query: 411 FIAATPFLVKPVA 423
            +   P +++  +
Sbjct: 579 ILFIRPTILRETS 591


>gi|262193577|ref|YP_003264786.1| type IV pilus secretin PilQ [Haliangium ochraceum DSM 14365]
 gi|262076924|gb|ACY12893.1| type IV pilus secretin PilQ [Haliangium ochraceum DSM 14365]
          Length = 1269

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 101/270 (37%), Gaps = 36/270 (13%)

Query: 183  KVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----- 235
            ++++LL        Q+ ++  I E R    ++ G Q   +   +     F  ++G     
Sbjct: 993  RIIDLLTRLDTQTPQIQIEARIVEARSTFAREFGVQWGGSLLDANTGLVFPGNYGVVGGN 1052

Query: 236  -------GKFVSEGGDFSVK------------------GVLDRFSFETVLHALERATAIR 270
                       +   DF+V                    V    +    L ALE    +R
Sbjct: 1053 TDSQTVGTGVAAASPDFAVNLPAATGTGAGGALGFAFGSVGGGLNLTLRLSALEDTGTVR 1112

Query: 271  TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIG 329
             ++ P +T ++   A  + G       +S++            + L  TP V      I 
Sbjct: 1113 IISAPKITVLNNVEAEISQGVSIPISVISAN--GVQTQFVQADLSLEVTPHVSQRDCSIA 1170

Query: 330  LRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            + +Q + +E   +   A   P+   ++A TTV +    T V+ G+   +       +P L
Sbjct: 1171 MDLQIQKNEADFVNTGARGDPTILRKEASTTVLVADNETTVIGGIYTRNSGLSYSKVPFL 1230

Query: 389  SKIPILGALFRNSRFNREETEIFIAATPFL 418
              +P+LG LF+N R N E TE+ +  TP +
Sbjct: 1231 GDLPLLGWLFKNRRENDERTEVLVFITPRI 1260


>gi|217971366|ref|YP_002356117.1| general secretion pathway protein D [Shewanella baltica OS223]
 gi|217496501|gb|ACK44694.1| general secretion pathway protein D [Shewanella baltica OS223]
          Length = 706

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 47/284 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 337 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGV 395

Query: 236 -------GKFVSE--------------------------GGDFSVKGVLDRFSFETVLHA 262
                  G  ++                           G    +   +    F  ++ A
Sbjct: 396 WQAQGEKGSSITTLDPEGKPVVTTNPDKRGDVTLLAQALGKVNGMAWGVAMGDFGALIQA 455

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317
           +   T    LA P++T +  Q ASF  G +    T S+++ +      +V   + GV L 
Sbjct: 456 VSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERKEVGVKLK 515

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL GL+ ++
Sbjct: 516 VVPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEE 573

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +Q+  + +P L  IPI+G LF++S   + +  + I   P +++ 
Sbjct: 574 VQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKPTIIRD 617


>gi|90412971|ref|ZP_01220969.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
           3TCK]
 gi|90325986|gb|EAS42425.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
           3TCK]
          Length = 559

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/317 (24%), Positives = 121/317 (38%), Gaps = 33/317 (10%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           ++E     ++  G  RTI  S +A  +S        R        K+ + +     + QV
Sbjct: 232 QLEKAVQAMIGSGEGRTIVVSPQASLISVRAYPNELRE------VKEFLGVSKKRLKRQV 285

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPS------KSFAADFGGKFVSEGGDFSVKGV 250
            L+  I EV      Q G   S   SS G +         AA  GG  +S          
Sbjct: 286 VLETKIMEVTLSDGYQQGVNWSNITSSIGGTDIIFGRTGPAALPGGDAISSLLGGQTNVT 345

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----------SS 300
           +   +FE VL  LE    +  L+ P +TA + Q A    GG   + T           S+
Sbjct: 346 ISDGNFEAVLSFLETQGDLNVLSSPRVTAANNQKAVIKVGGDQYFVTDISGGEVSGDNST 405

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--------- 351
           S     +T    G+ L  TP +   G + L +   V E V      D+ +          
Sbjct: 406 SAPDIELTPFFSGISLDVTPQIDDEGGVLLHVHPTVVEVVNETKDIDLGATFGVYKLPLA 465

Query: 352 --RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R++D+ +   SG  +V+ GL+K  I      +P L  IP LG LFRN    + +TE
Sbjct: 466 KSSIRESDSVIFARSGDVVVIGGLMKSAINDQVSKVPFLGDIPGLGHLFRNVNKVQSKTE 525

Query: 410 IFIAATPFLVKPVAMRD 426
           + I   P +V     + 
Sbjct: 526 LVILLKPTVVDDQTWQQ 542


>gi|261211199|ref|ZP_05925488.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC341]
 gi|260839700|gb|EEX66311.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC341]
          Length = 571

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 104/264 (39%), Gaps = 28/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  V+   L ++G +  +  ++   S              
Sbjct: 308 REIIESLDIP-VKQVQIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGSIESNLWQQGL 366

Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                         +      +     F V  +      +  L AL+  +    ++ P L
Sbjct: 367 LADDKFPVDQFLNVNLASTSANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRL 426

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A    G +  Y   SSS  A++V+     + L  TP +    R+ L +     
Sbjct: 427 ITTNKQPAYIEQGTEIPYLESSSSG-ASTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQD 485

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                +    G+  S   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LG
Sbjct: 486 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 545

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
           ALFR +     ++E+ I  TP +V
Sbjct: 546 ALFRRTYEQMGKSELLIFVTPKVV 569


>gi|170699037|ref|ZP_02890094.1| general secretion pathway protein D [Burkholderia ambifaria
           IOP40-10]
 gi|170136073|gb|EDT04344.1| general secretion pathway protein D [Burkholderia ambifaria
           IOP40-10]
          Length = 770

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 112/310 (36%), Gaps = 50/310 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236
           + V++ L+ A   QV ++  I E+       +G Q  +         + AA  G      
Sbjct: 392 RSVIDQLD-ARRAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLAAAAGNVAGNS 450

Query: 237 -----------------KFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPT 276
                               +     ++  + + F       +L      +    L+ P 
Sbjct: 451 IINLTTGGTAATTGIAANLANLNQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPN 510

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G      T S S   +  T          D G+ LH  P +   G +
Sbjct: 511 LITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGIL 570

Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            L++ TE S  V G  NA   P++  R   +T+   +G  IVL GL++D+ Q     +PL
Sbjct: 571 KLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPL 630

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  IP +G LFR+    R++T + +   P ++               S    A+    NR
Sbjct: 631 LGDIPWIGQLFRSESKQRQKTNLMVFLRPVII---------------SDRSTAQEVTANR 675

Query: 448 VNKIYGPKEA 457
            + I G   A
Sbjct: 676 YDYIQGVTGA 685


>gi|220915798|ref|YP_002491102.1| type IV pilus secretin PilQ [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953652|gb|ACL64036.1| type IV pilus secretin PilQ [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 887

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 103/259 (39%), Gaps = 35/259 (13%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSG---PSKSFAADFGGKFVSEGG 243
            QV ++  I E   +  +Q+G Q          TG+ +G   P+    A   G+  ++G 
Sbjct: 618 PQVLIESRIVEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQAPNQGT 677

Query: 244 D----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                    +      F+    L ALE    ++T++ P +  I 
Sbjct: 678 SSTPNYAVNLPAAIGQGSGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATID 737

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            + A+   G    +   S+S    + T  +  + L  TP V + G I L+I+   + P  
Sbjct: 738 NKEATIGQGISIPFSQTSAS--GVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNS 795

Query: 342 GVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            +      PS   R+A+T V +  G T V+ G+           +P LSKIP+LG  FR+
Sbjct: 796 SLTGSNGQPSISKREAETEVLVKDGETTVIGGIYTRSTASKTASVPFLSKIPLLGFFFRS 855

Query: 401 SRFNREETEIFIAATPFLV 419
                + TE+ I  TP ++
Sbjct: 856 DTNTDDHTELLIFITPRIL 874


>gi|206891200|ref|YP_002248265.1| PilQ [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206743138|gb|ACI22195.1| PilQ [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 663

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 97/257 (37%), Gaps = 29/257 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITG----------------------SSSGPSKSF 230
             Q+ L+  I E+     K +GF+  I                        S  G +   
Sbjct: 405 TRQILLEARIIEMSSSFSKSLGFEWGIQWYPPGTRTTIVGSVGAAAGSSASSVPGGTAPL 464

Query: 231 AADF---GGKFVSEGGDFSVKGV--LDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           A +     G   S    F++  +      + +  + AL+++   + ++ P +  +  Q A
Sbjct: 465 AINLPASTGNVTSPTTAFTIGYLNPSQTIALDLRISALQQSGKGKVISNPKVITLDNQKA 524

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
               G    Y      +G  S    D  + +  TP ++    + L +     + V  VN 
Sbjct: 525 KIVQGASIPYGEKDVQSGQISTKFKDVAITVEATPHLIDDKSMLLDVSVIKEDLVEFVNI 584

Query: 346 GDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           G +  P     + +T V L  G T+V+ G+ K      +  +P L  +P+LG LF++   
Sbjct: 585 GGVYAPRTTKIEGNTKVSLKDGETLVIGGIYKKTDSLTESKVPGLGDVPLLGELFKSRGR 644

Query: 404 NREETEIFIAATPFLVK 420
           +    E+ I  TP ++K
Sbjct: 645 DETLYEVMIFVTPRILK 661


>gi|54302288|ref|YP_132281.1| putative pilus assembly transmembrane protein [Photobacterium
           profundum SS9]
 gi|46915710|emb|CAG22481.1| putative pilus assembly transmembrane protein [Photobacterium
           profundum SS9]
          Length = 217

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 12/190 (6%)

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            AISG+ A F SGG+      +      ++   ++GV L F PTV+S   I L +  EVS
Sbjct: 1   MAISGEEAEFISGGEFPIPVPNDEN--ITIEFKEFGVALKFIPTVMSADSINLALNIEVS 58

Query: 338 ----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
                      P        +PS   R A TTVEL +G TI +AGLL ++I  + E +P 
Sbjct: 59  EISNQNAVSIRPSGTNTQFFVPSLSKRGAKTTVELGNGQTIGIAGLLNENITDVVEKLPG 118

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  +PI+G LFR+  F + ETE+ I  TP L KPV  +D++ P D++   +D + +   R
Sbjct: 119 LGDLPIIGQLFRSQSFRKGETELVILVTPRLAKPVRKQDITLPTDNFVEPNDWEYYLLGR 178

Query: 448 VNKIYGPKEA 457
           ++++   + A
Sbjct: 179 MSELKRNEPA 188


>gi|320181011|gb|EFW55932.1| General secretion pathway protein D [Shigella boydii ATCC 9905]
          Length = 686

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 111/296 (37%), Gaps = 44/296 (14%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSS 223
              Q    S + V+  L+I    QV ++  I EV        G Q +            +
Sbjct: 340 TAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAEGSNINFGVQWASKDAGLMQFANGT 398

Query: 224 SGPSKSFAADF-------GGKFVSEGGDFSVKGVLDR---------------------FS 255
             P  +  A         G   +SE G  ++    +                        
Sbjct: 399 QIPIGTLGAAISQAKPQKGSTVISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGD 458

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTH 310
           +  ++ A++  ++   L+ P++T +  Q A F  G      T S+     S    +V   
Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERK 518

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
             G++L  TP +     + + I+ EVS+     +   +  +  RK  TTV    G  IVL
Sbjct: 519 KVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVL 576

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GL+ D   +    +PLL  IP++G LF+++   +E+  + +   P +++     D
Sbjct: 577 GGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAAD 632


>gi|238764794|ref|ZP_04625736.1| General secretion pathway protein D [Yersinia kristensenii ATCC
           33638]
 gi|238696992|gb|EEP89767.1| General secretion pathway protein D [Yersinia kristensenii ATCC
           33638]
          Length = 635

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 103/252 (40%), Gaps = 12/252 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----FAADFGGK 237
            +V+  L++    QV ++  I E +      +G + +                 A+   +
Sbjct: 326 DQVIEKLDVR-RAQVLVEAIIVETQNGEGLNLGIKWANKFHGGVNFLQNPDRIRANNNSE 384

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                    +     + +++ +  AL   +    LA P++  +    A F  G +    T
Sbjct: 385 NPIPTVISGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 444

Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDM-PS 350
            + +T       S++    GV+L   P +     + L I+ EVS      G NA ++   
Sbjct: 445 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSGTNANNLGSV 504

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+V+ GLL   + ++   +P L  IP++G LF+  + N E++ +
Sbjct: 505 FNKRVVNNAVLVKSGETVVVGGLLDKKLSKVINKVPFLGDIPLIGRLFQQRKENIEKSNL 564

Query: 411 FIAATPFLVKPV 422
            +   P +++  
Sbjct: 565 ILFIRPTILRET 576


>gi|226943724|ref|YP_002798797.1| general secretion pathway protein D [Azotobacter vinelandii DJ]
 gi|226718651|gb|ACO77822.1| general secretion pathway protein D [Azotobacter vinelandii DJ]
          Length = 752

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 90/482 (18%), Positives = 177/482 (36%), Gaps = 43/482 (8%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISI--GLNKVIILQVPVDVQD--VLVSDPTKA 77
           S+A  P    A+     +  V   +G  +S    L  V++L++   +Q   V  +DP   
Sbjct: 276 SLAISPVYASADELGTALVKVLQAEGYDVSENPPLGGVVVLKLKE-LQRLIVFAADPAIL 334

Query: 78  D-----VVVHS-------PRTMYLF----GKNVGQANVI-LIGHDGKQM---LNLDILIE 117
                 V +            ++L+     +  G A+++  +G+        LN    + 
Sbjct: 335 ATARQWVELLDRQSQEQVENGLFLYQVRNTQAAGIASMLGALGYSATIPDTGLNTSNTVT 394

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTV-VLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
              A    +L       ++     +        +    +     V+ +   +   G  Q 
Sbjct: 395 PTGASTGESLATSGPIRSVTGTGANARASAPTSIAGNPEQGSVVVDANRNAIIYKGSGQE 454

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                  ++  L+      V + V +AEV  +  + +G       + +G   S    FG 
Sbjct: 455 WLKLRP-LLEELDRPVPS-VIIDVLLAEVNLNDREGLGVDWQ---NITGSLGSKQLIFGT 509

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                    ++  +      +  L+A          + P L   SG+ A+   G +    
Sbjct: 510 ANGIGSSGLNISALNSAGQTKATLNAFYDNNQAVIRSSPKLMVRSGEEATIEVGNEIPVV 569

Query: 297 TVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM- 348
           T ++ +  T       +V     GV+L+  PTV + G + L+I  E+SE         + 
Sbjct: 570 TGTTQSTDTDNAPITQTVQYRKTGVLLNIKPTVQASGVVDLKISQELSESTDTGTGDTLT 629

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P    R+ +T + L  GG+++LAGL+     +   G+PLL  +P +G LF++   +   T
Sbjct: 630 PIINNRRVETALTLRDGGSVMLAGLISSSKGKGDNGVPLLGDLPWIGNLFKSQSNSETRT 689

Query: 409 EIFIAATPFLVKP-VAMRDLS---RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           E+ +   P++V+     +DLS   R     +  D  +    +R+   Y P          
Sbjct: 690 ELIVMIIPYVVRDFDEAQDLSRTYREQLSLNNSDSLERRGDHRLPPAYAPHATETPPAPA 749

Query: 465 YK 466
           ++
Sbjct: 750 HR 751


>gi|332702379|ref|ZP_08422467.1| general secretion pathway protein D [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552528|gb|EGJ49572.1| general secretion pathway protein D [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 677

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 124/336 (36%), Gaps = 29/336 (8%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR---TIQDSQRAVELSETFLSQSGRN 174
            D   L   L   +  +              G+V    +   +  A + + + +  +G +
Sbjct: 296 ADATELADVLNGLVGKTTGSAAAGGQAPKESGVVTPVISSGVTILADKATNSLVITAGAD 355

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL------KQIGFQHSITGSSS-GPS 227
            +  +  ++++  L+     QV ++  I EV            Q      I G       
Sbjct: 356 DF--TLIEELLRDLDTP-RKQVLVEALIMEVSSTENVEFGSKLQGVVDVGIGGREGVAGG 412

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETV----LHALERATAIR----TLAEPTLTA 279
            S  A      ++ G  F +       +   V    L+AL  A  I      ++ P +  
Sbjct: 413 FSNPAGLSESVLNPGTVFGIGAAAIPVTINGVTYTNLNALIAAGKINSDFNIISTPQIMT 472

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           +  Q AS T      Y+T  +ST        T  T  D G +L  TP +   G I L+I 
Sbjct: 473 LDNQEASITVAENRPYQTSQTSTLNDLNNIVTQFTYRDVGTILKLTPQINEGGMIKLKIF 532

Query: 334 TEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            E SE          +P  R R  +T V +  G T+VL+GL+          +PLL  IP
Sbjct: 533 QEFSEVDQAATGVSTLPVTRKRTTETAVVIREGQTVVLSGLIGKSATSSSSRVPLLGDIP 592

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDL 427
           +LG LFR       +T + +  TP +V  P   +DL
Sbjct: 593 LLGWLFRYDTREERKTNLLVFITPRVVDSPEKAQDL 628


>gi|163783780|ref|ZP_02178765.1| hypothetical protein HG1285_09976 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880969|gb|EDP74488.1| hypothetical protein HG1285_09976 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 550

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 18/243 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFV----- 239
             QV ++  I EVR+++++++G   S            S G   +      G        
Sbjct: 308 PPQVKIEARILEVRKEVVRELGINWSALLSNAKVQQSWSGGAGVNLGVGQAGAITPSLSA 367

Query: 240 SEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           + GG  +        +     L A ER   I++LA+PT+  I+GQ+A    G +  Y+T 
Sbjct: 368 TPGGILTFTYAKGALNALNLRLSAFERLGKIKSLAKPTIVTINGQNAVIKQGQEIPYQTA 427

Query: 299 SSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
             + G++  S+   +  + L+  P +   GRI L ++ +   P +    G  P+   ++ 
Sbjct: 428 VIAGGSSVPSIQFKEAVLELNVLPIISPDGRILLDMELKQEIPGVQTPIG--PTIIKKQV 485

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V + +G TIV+ G++    +  KEG+  L ++PIL  LF     + ++ E+ I  TP
Sbjct: 486 STKVIVNNGDTIVIGGIIDSLNRNTKEGVAGLVRVPILKWLFGQESKHIQDIELLIFITP 545

Query: 417 FLV 419
            ++
Sbjct: 546 SII 548


>gi|17548364|ref|NP_521704.1| putative GSPD-related protein [Ralstonia solanacearum GMI1000]
 gi|17430610|emb|CAD17294.1| putative gspd-related protein [Ralstonia solanacearum GMI1000]
          Length = 754

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 151/410 (36%), Gaps = 55/410 (13%)

Query: 53  GLNKVIILQVPVDVQ-DVLVSDPTKADVV------------VHSPRTMYLFGKNVGQANV 99
           GLN V    V  D +  V + + T A+VV            V    ++ ++         
Sbjct: 206 GLNFVFDKDVRTDQKVTVFLRNSTVANVVNTVLLTNQLEQRVLDGNSILIYPNTP----- 260

Query: 100 ILIGHDGKQMLNLD-ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
                D + +     +L   D   +  T++  +   +I V+   + +V+      IQ ++
Sbjct: 261 -AKQRDYQPLTVRTFVLSNSDAKDVANTVKTILKTRDIVVDEKRNMIVMRDTPDAIQAAE 319

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           + V + E                           E +V L+V I EV+R  L+ +G Q  
Sbjct: 320 KLVAVHEM-------------------------PEPEVMLEVEILEVKRSRLQDLGIQLP 354

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
              S +  + S         +       +   +   +    ++     T    LA P + 
Sbjct: 355 SQLSLTPLASSSGGTLTLDDLRHLNPTRIGATVSPLN----VNVNAAVTDTNVLANPRVR 410

Query: 279 AISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
             + + A    G +    T +S+     A +V   D G+ L   PTV     + +RI  E
Sbjct: 411 TRNKEKARIQVGQRVPNVTTTSTATGFVAENVQYVDVGLKLEVEPTVTPDNEVTIRINLE 470

Query: 336 VSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           VS+ +  V             R A T + L  G   +LAGL++D+ +     +P L  IP
Sbjct: 471 VSDIISQVQTKSGSIAYEIGTRNATTLLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIP 530

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
            LG LF     N+ ++EI ++ TP +++P    +L   +     E   + 
Sbjct: 531 ALGRLFGAQSDNKLKSEIVLSITPRVIRPAQRPNLGSAEFDSGTESSLRL 580


>gi|332524328|ref|ZP_08400549.1| fimbrial biogenesis protein [Rubrivivax benzoatilyticus JA2]
 gi|332107658|gb|EGJ08882.1| fimbrial biogenesis protein [Rubrivivax benzoatilyticus JA2]
          Length = 719

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 106/275 (38%), Gaps = 42/275 (15%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------------------- 220
           +++  ++I    QV ++  I E      + +G +                          
Sbjct: 442 QLIAKIDIP-VRQVMIEARIVEADDTFGRALGVKLGANAAPKFYNNGGVGVGVGGNYDDV 500

Query: 221 GSSSG----------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           G  +G                P+   +++F G   +     S+            L ALE
Sbjct: 501 GYQTGQLLKDPGFNSTQFVNLPANISSSNFSGVTSAPTFAVSLFNSSLTRFLNLELSALE 560

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                + ++ P +     + A    G +  Y+  S+S+GATS++     + L  TP +  
Sbjct: 561 ADGKGKIVSSPRVITADQEKALIEQGEELPYQE-STSSGATSISFRKASLKLEVTPQITP 619

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            G + L +  +V++  +G +     +   +   T V + +GGT+V+ G+           
Sbjct: 620 EGNVILDV--DVNKDSVGRSTAAGFAIDTKHVKTKVLVENGGTVVIGGIYTQSESTDVSK 677

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +PLL  IP LG LFR++     +TE+ +  TP +V
Sbjct: 678 VPLLGDIPGLGVLFRSTTRTSSKTELLVFLTPKIV 712


>gi|292493847|ref|YP_003529286.1| type IV pilus secretin PilQ [Nitrosococcus halophilus Nc4]
 gi|291582442|gb|ADE16899.1| type IV pilus secretin PilQ [Nitrosococcus halophilus Nc4]
          Length = 699

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 99/266 (37%), Gaps = 31/266 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+I    QV ++  I     D  K +G +  ++               G     
Sbjct: 433 RKLVARLDIP-VRQVLIESRIVIANSDFSKDLGIRFGLSKREDTGGAFDEVVTSGSLNGT 491

Query: 242 GG---------------------------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                                          ++  +      E  L AL+       ++ 
Sbjct: 492 TQIINRETLELQDRMNVNLPVTRQDAARIALALTKLPLGNLLELELSALQAEGRGEVISN 551

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +   +   A    G +  ++  +SS GATSV+     + L   P +    RI + +  
Sbjct: 552 PRVITSNQNEALIEQGTEIPFQQATSS-GATSVSFKKAVLSLKVVPQITPDDRIIMDLT- 609

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            V++  +G     +PS   R+  T V + +G T+VL G+ + +  +    +P L  +P +
Sbjct: 610 -VNKDSVGQVFNGVPSIDTREVATQVLVDNGQTVVLGGIYEQEQNRASRRVPFLGDLPYV 668

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G LFR+      + E+ I  TP ++K
Sbjct: 669 GTLFRDKSEVNNKDELLIFVTPKIIK 694


>gi|319761560|ref|YP_004125497.1| type iv pilus secretin pilq [Alicycliphilus denitrificans BC]
 gi|330823429|ref|YP_004386732.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans K601]
 gi|317116121|gb|ADU98609.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans BC]
 gi|329308801|gb|AEB83216.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans K601]
          Length = 713

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 109/276 (39%), Gaps = 42/276 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ------------------------- 216
           +K++  L++    QV ++  I E R    + +G +                         
Sbjct: 435 RKLLLTLDVP-VRQVMIEARIVEARDTFGRSLGVRLGGGDLRANRGGDGGYSIGGGNRAA 493

Query: 217 HSITGSSSGPSKSF--AADFGGKFVSEGGDFSVKGVLDRFSFE-----------TVLHAL 263
                S++  S  F  A + GG FV+     S    +  F+               L A+
Sbjct: 494 WGTNYSNATNSAGFGDAVNVGGNFVNLPASLSNVTGVGSFALSIFNSAANRFLTLELSAM 553

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E     + ++ P L       A    G ++ Y +V++  GAT++      + L   P + 
Sbjct: 554 EADGQGKVVSSPRLITADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVVPQIT 612

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             G I L +  +V++   G +     +   +   T V + +GGT+V+ G+ + +    + 
Sbjct: 613 PEGNIILDL--DVNKDSRGESTTQGVAIDTKHIKTQVLVENGGTVVIGGIFELEETNQEN 670

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            IPLL  +P++G LF++      + E+ +  TP ++
Sbjct: 671 KIPLLGDVPVMGNLFKSRTKESSKREMLVFITPKVI 706


>gi|86157073|ref|YP_463858.1| type II and III secretion system protein, secretin
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773584|gb|ABC80421.1| type II and III secretion system protein, secretin
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 882

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 101/259 (38%), Gaps = 35/259 (13%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSFAADFGGKFVSEGG 243
            QV ++  I E   +  +Q+G Q     S           + P+    A   G+  ++G 
Sbjct: 613 PQVLIESRIVEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQAPNQGT 672

Query: 244 DFS----------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             +                      +      F+    L ALE    ++T++ P +  I 
Sbjct: 673 SATPNYAVNLPAAIGQGAGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATID 732

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            + A+   G    +   S+S    + T  +  + L  TP V + G I L+I+   + P  
Sbjct: 733 NKEATIGQGISIPFSQTSAS--GVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNS 790

Query: 342 GVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            +      PS   R+A+T V +  G T V+ G+           +P LSKIP+LG  FR+
Sbjct: 791 SLTGSNGQPSISKREAETEVLVKDGETTVIGGIYTRSTASKTAAVPFLSKIPLLGFFFRS 850

Query: 401 SRFNREETEIFIAATPFLV 419
                + TE+ I  TP ++
Sbjct: 851 DTNTDDHTELLIFITPRIL 869


>gi|294142972|ref|YP_003558950.1| general secretion pathway protein D [Shewanella violacea DSS12]
 gi|293329441|dbj|BAJ04172.1| general secretion pathway protein D [Shewanella violacea DSS12]
          Length = 712

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 112/284 (39%), Gaps = 47/284 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFV 239
             V+N L+I    QV ++  I EV        G Q +          +     G  G  V
Sbjct: 336 DSVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGIQWATASGGGTQFNNLGPTIGEIGAGV 394

Query: 240 ------------------------------------SEGGDFSVKGVLDRFSFETVLHAL 263
                                               + G    +   +    F  ++ A+
Sbjct: 395 WLAKDQKASQTCTGSGDNKTCTDNPDTPGDITLLAQALGKVNGMAWGVATGDFAALIQAV 454

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLH 317
              T    LA P++T +  Q ASF  G +    T S S+        T+V   + GV L 
Sbjct: 455 SSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSQSSSNGNENPFTTVERKEVGVKLK 514

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P +     + L I+ EVS  + G  A D+ ++  R+  TTV   SG  +VL GL+ ++
Sbjct: 515 VIPQINEGSSVKLTIEQEVSG-INGKTAVDV-TFATRRLTTTVMADSGQIVVLGGLINEE 572

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +Q+  + +P L  +P++G LFR+S  ++++  + I   P +++ 
Sbjct: 573 VQESVQKVPFLGDLPLIGHLFRSSSSSKKKKNLMIFIKPTIIRD 616


>gi|152980977|ref|YP_001355054.1| PilQ type IV pilus assembly protein [Janthinobacterium sp.
           Marseille]
 gi|151281054|gb|ABR89464.1| PilQ type IV pilus assembly protein [Janthinobacterium sp.
           Marseille]
          Length = 686

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 94/249 (37%), Gaps = 25/249 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIG------FQHSITGSSSGPSKSFAADFGGKFVSEGG--- 243
             QV ++  I E        +G       Q+       G   S     G   +       
Sbjct: 434 TRQVMIEARIVEADDKFSSSLGAKLSFGVQNQGNYQLGGRQTSTTTAIGPPTLGGSAVNL 493

Query: 244 -----DFSVKGVLDRFSFETV--------LHALERATAIRTLAEPTLTAISGQSASFTSG 290
                + +  G +    F           L ALE     + ++ P +       A    G
Sbjct: 494 PASTINSNTPGSVALTLFNAAATRFIGLELSALEADGKGKVISSPRVITADQLKALIEQG 553

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV+     + L  TP +   G + L +  +V++  +GV      +
Sbjct: 554 TELPYQQATSS-GATSVSFRKANLKLEVTPQITPDGNVILDV--DVNKDTVGVETRSGFA 610

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+ +   +     +P    IP+ G LF+ +    ++TE+
Sbjct: 611 IDTKHVKTQVLIDNGGTVVIGGIFQQTERDSVSKVPFFGDIPVFGNLFKTTGRTNDKTEL 670

Query: 411 FIAATPFLV 419
            I  TP ++
Sbjct: 671 LIFLTPKIL 679


>gi|120600493|ref|YP_965067.1| general secretion pathway protein D [Shewanella sp. W3-18-1]
 gi|120560586|gb|ABM26513.1| general secretion pathway protein D [Shewanella sp. W3-18-1]
 gi|319424804|gb|ADV52878.1| general secretion pathway protein D [Shewanella putrefaciens 200]
          Length = 705

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 109/284 (38%), Gaps = 47/284 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394

Query: 236 -----------------GKFVSE----------------GGDFSVKGVLDRFSFETVLHA 262
                            G  V+                 G    +   +    F  ++ A
Sbjct: 395 WQAQDKEGDTVTTLDGNGNPVTTKNPDTRGDVTLLAQALGKVNGMAWGVAMGDFGALIQA 454

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317
           +   T    LA P++T +  Q ASF  G +    T S+++        +V   + GV L 
Sbjct: 455 VSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLK 514

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL GL+ ++
Sbjct: 515 VVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEE 572

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +Q+  + +P L  IP+LG LF++S   + +  + I   P +++ 
Sbjct: 573 VQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIRD 616


>gi|149925604|ref|ZP_01913868.1| type II and III secretion system protein [Limnobacter sp. MED105]
 gi|149825721|gb|EDM84929.1| type II and III secretion system protein [Limnobacter sp. MED105]
          Length = 807

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 122/314 (38%), Gaps = 49/314 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----------ITGSSSGPSKSF 230
           + ++  L++    QV ++  I EV  D   + G Q             + G ++      
Sbjct: 423 RSIIEKLDVR-RAQVFVESLIVEVSTDKAAEFGIQFQGLSGVGADGVRVIGGTNFNDPGS 481

Query: 231 AADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            ++  G   + G            G  ++ G+    +   +  ALE       L+ P + 
Sbjct: 482 GSNILGAATNLGSVGRGLNIGVIDGQVNIPGIGTISNLGFLARALESKANANILSTPNIL 541

Query: 279 AISGQSASFTSGGQHLYKTV----SSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIG 329
            +  + A    G    + T     S   GAT     ++   D G+ L   P V   G + 
Sbjct: 542 TLDNEEAKIVIGQNVPFITGQFTNSGGNGATVNPFQTIERQDVGLTLRVKPQVSEGGIVK 601

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           L I  EVS  V   N   + +   R  ++ V + +G  IVL GL++D +   +E +P L 
Sbjct: 602 LGIFQEVSSVVDSTNVSGIIT-NKRSIESNVLVETGNIIVLGGLVEDRVTGNEEKVPGLG 660

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
            +P+LG  FR     R++T + +   P +V+                ED A++   NR +
Sbjct: 661 DVPVLGQFFRYDNRRRQKTNLMVFLRPVVVRN---------------EDQAQSIVTNRYD 705

Query: 450 KIYGPKEASEVEGQ 463
            +   ++ ++ E +
Sbjct: 706 YMRQLQQENQPEKR 719


>gi|187925571|ref|YP_001897213.1| type IV pilus secretin PilQ [Burkholderia phytofirmans PsJN]
 gi|187716765|gb|ACD17989.1| type IV pilus secretin PilQ [Burkholderia phytofirmans PsJN]
          Length = 591

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 91/238 (38%), Gaps = 11/238 (4%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------GKFVSEG 242
               QV ++  I E      + +G + S+  +++  +     D G          F    
Sbjct: 355 RPTRQVLIEARIVEGEHGFSRNLGVKLSMAATNADGTAKGLTDAGYDLSARPISGFDVAT 414

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
              ++            L ALE       ++ P +       A    G +  Y+      
Sbjct: 415 AGLTLFAAGATRLLNIELSALEAQGRGEIVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQ 473

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           G + V      + L   P ++  GR+ L +           +AG  P+   +   T VE+
Sbjct: 474 GVSGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGEQTDAG--PAINTKHVQTRVEV 531

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             GGT+ + G+   D +     +P+L KIP+LGALFR+     + +E+ +  TP +V+
Sbjct: 532 EDGGTVSIGGIYATDDRDDVTRVPVLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 589


>gi|220921783|ref|YP_002497084.1| general secretion pathway protein D [Methylobacterium nodulans ORS
           2060]
 gi|219946389|gb|ACL56781.1| general secretion pathway protein D [Methylobacterium nodulans ORS
           2060]
          Length = 784

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 123/260 (47%), Gaps = 19/260 (7%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           A   QV + VTIAEVR +   + G Q+ +  S  G  K+    FG    +  G  +V   
Sbjct: 508 ATPAQVAVNVTIAEVRLNDQLKYGVQYFLDSSRIGLGKN-KGSFGLVSAAATGATNVLKP 566

Query: 251 LDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
              F+F        + V+ AL+  T ++ L+ P+L  +  Q A+   G      T  + +
Sbjct: 567 GAGFNFLVGGYSGPDVVISALDGFTDVKVLSSPSLVVLENQPATLQVGDSVPITTRQAQS 626

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                      V   D G++L+  P +     + ++I+ E+S  V G +    P+   R+
Sbjct: 627 IDYANAPLINQVEFRDTGIILNVIPRIGQNDAVTMQIEQEISAVVGGSDTLT-PTISKRR 685

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             +T+ + +G T++LAGL+ D  Q+ ++GIP L+++P +G LF ++    E TE+ +   
Sbjct: 686 VASTISVANGQTVLLAGLISDKHQRERDGIPFLNRLPQIGQLFSSTDNGAERTELVVFIR 745

Query: 416 PFLVKPVAMRDLSRPDDHYS 435
           P +V+    RD  R  + Y 
Sbjct: 746 PVVVRN--GRDAQRVAEDYR 763


>gi|148977866|ref|ZP_01814421.1| MSHA biogenesis protein MshL [Vibrionales bacterium SWAT-3]
 gi|145962935|gb|EDK28206.1| MSHA biogenesis protein MshL [Vibrionales bacterium SWAT-3]
          Length = 549

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 119/323 (36%), Gaps = 33/323 (10%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           ++E     ++  G  +++  + +A  ++        R        ++ + +     + QV
Sbjct: 223 QLEAAVAHLIGSGNGQSVVVTPQASVITVRAFPDEIRE------VREFLGVSQQRLQRQV 276

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VL 251
            L+  I EV      Q GF  S    S G                    S+ G      +
Sbjct: 277 ILEAKIMEVTLSDGYQQGFSWSNLSKSIGSGGVVIDRPASTLPPLDAISSLLGGQTNVTI 336

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGAT- 305
              SFE VL  ++    +  L+ P +TA + Q A    G    Y T     V S   A  
Sbjct: 337 SDGSFEAVLSFMDTQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSAVGSGDNANV 396

Query: 306 ----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPS 350
                +T    G+ L  TP +   G + L +   V E              GV    +  
Sbjct: 397 APEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEKEVKKLNLGSTTGVVELPLAK 456

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++D+ +    G  +V+ GL+K +   +   +P L  IP LG LFRN+    ++TE+
Sbjct: 457 SSIRESDSVIRARDGDVVVIGGLMKSNTSDVTSKVPFLGDIPALGHLFRNTNQLTQKTEL 516

Query: 411 FIAATPFLVK-PVAMRDLSRPDD 432
            I   P +V       +L R  D
Sbjct: 517 VILLKPTVVGVNTWQSELERSRD 539


>gi|296314608|ref|ZP_06864549.1| type IV pilus secretin PilQ [Neisseria polysaccharea ATCC 43768]
 gi|296838653|gb|EFH22591.1| type IV pilus secretin PilQ [Neisseria polysaccharea ATCC 43768]
          Length = 505

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 108/261 (41%), Gaps = 23/261 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K+++ L++    QV ++  I E      + +G +   TG         A  +G     E
Sbjct: 238 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFE 296

Query: 242 GGD-------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           GGD                    S+   +   +    L A E  +  +TLA P +   + 
Sbjct: 297 GGDGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNR 356

Query: 283 QSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           + A   SG +  Y+  + S S+ +T+ T     + L  TP +   G+I + ++     PV
Sbjct: 357 KEAKIESGTEIPYQDTSSSGSSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPV 416

Query: 341 I-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              V        + +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF+
Sbjct: 417 DCTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFK 476

Query: 400 NSRFNREETEIFIAATPFLVK 420
               +    E+ I  TP ++ 
Sbjct: 477 TRGKSTNRRELLIFITPRIMD 497


>gi|260550835|ref|ZP_05825042.1| type II secretory pathway [Acinetobacter sp. RUH2624]
 gi|260406145|gb|EEW99630.1| type II secretory pathway [Acinetobacter sp. RUH2624]
          Length = 721

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 108/281 (38%), Gaps = 39/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           +K+++LL++    QV ++  I        K++G +  I       +K+            
Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVGGSETTLWN 501

Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                    D G    +    F +  + D F  +  L AL+   
Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 560

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325
               ++ P +     Q+A   +G Q  Y+T ++S   ++   +  D  + L+ TP++   
Sbjct: 561 YGEVISTPKVMTADKQTAKVATGQQVPYQTTTNSAAGSTATTSFKDALLSLNVTPSITPD 620

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G+I +++             G++        +T V + +G T++L G+ +      +  +
Sbjct: 621 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTTNSQTKV 679

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 680 PFFGDIPVVGHLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720


>gi|16124428|ref|NP_418992.1| general secretion pathway protein D [Caulobacter crescentus CB15]
 gi|221233111|ref|YP_002515547.1| type II secretion pathway protein D [Caulobacter crescentus NA1000]
 gi|13421292|gb|AAK22160.1| general secretion pathway protein D [Caulobacter crescentus CB15]
 gi|220962283|gb|ACL93639.1| type II secretion pathway protein D [Caulobacter crescentus NA1000]
          Length = 687

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 118/292 (40%), Gaps = 41/292 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------------ 224
           +V+  L++   +QV ++  + EV     KQ+G Q  + G++                   
Sbjct: 355 EVIRQLDVR-REQVLVEAIVVEVTDGTAKQLGVQFLLGGTNGTIPFVATNYTNATPSLLP 413

Query: 225 --GPSKSFAAD-------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
             G + +  +                    + G    V G      F  +++A+++ T  
Sbjct: 414 LVGAAATTTSGADTEALKSLRDAAVSSLLTASGVTSGVVGRSGDALFGAIINAVKKDTGS 473

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLS 324
             L+ P++  +  + A    G +    T      S++    ++   + G+ L   P + +
Sbjct: 474 NLLSTPSIMTLDNEEARILVGQEVPITTGEVLGDSNANPFRTIQRQNVGIQLEVKPQINA 533

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G I L ++ EVS     V+ G        R+ +TT  +  G  +VL GLL     Q  +
Sbjct: 534 GGGITLFLRQEVSSVAGPVSVGSSELIINKREIETTALVDDGDIVVLGGLLDQQETQSAQ 593

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY 434
             P L  +P LGALFR++   R++T + +   P +++  A  R+L+ P   Y
Sbjct: 594 RTPGLGDVPGLGALFRSTARERKKTNLMVFIRPRIIRSSADARNLTAPRYDY 645


>gi|107101302|ref|ZP_01365220.1| hypothetical protein PaerPA_01002336 [Pseudomonas aeruginosa PACS2]
          Length = 776

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 73/312 (23%), Positives = 121/312 (38%), Gaps = 38/312 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
           + ++  L++    Q+ ++  I E+  +I   +G Q ++          FA          
Sbjct: 340 EDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLL 398

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A   GK  +E  D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G
Sbjct: 399 GALQAGKPPAELPDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVG 457

Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               ++T S +T A       T+V   D GV L  TP +     + L I+ E+S      
Sbjct: 458 QNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTA 517

Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                        R   +TV    G  IVL GL++DD+ +    +PLL  IP +G LFR+
Sbjct: 518 TLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRS 577

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
           SR  R +  + +   P +V+  A                 +     R   I   + A+  
Sbjct: 578 SRETRVKRNLMVFLRPSIVRDAAG---------------LERISHGRYRSIQLLRGAAGE 622

Query: 461 EGQNYKGAIGFI 472
             +      G I
Sbjct: 623 PARPLFEDAGAI 634


>gi|222099578|ref|YP_002534146.1| ComE protein [Thermotoga neapolitana DSM 4359]
 gi|221571968|gb|ACM22780.1| ComE protein [Thermotoga neapolitana DSM 4359]
          Length = 1282

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 113/262 (43%), Gaps = 6/262 (2%)

Query: 161  VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
            V+    F+  +G ++       +++  L    + QV +   I  V + ++  +  +  + 
Sbjct: 1026 VDSLNNFMVVTGISETIKKELDRIVENLKKPTK-QVEISAKI--VDKSLIDMVTKEMGLQ 1082

Query: 221  GSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             S +G   S +       V++  DF  V   +            +  T    LA P +  
Sbjct: 1083 LSGTGVDLSSSGASISFSVTDYLDFEKVINEILNSPLSLQFSDQKSNTLDDILASPRIVT 1142

Query: 280  ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
             SG+ A    G +  Y T ++  G   V   + G+ L  TP V S   I L +  + SEP
Sbjct: 1143 TSGKEAKILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELDLFVKASEP 1202

Query: 340  VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               +N  ++P  R R+A T + + +  TIV+ GL+++     +  +P    +P++G  FR
Sbjct: 1203 GNYIN--EVPGERTREATTHLIVKNNSTIVIGGLIREVTNMSESKLPFFGDLPVIGQFFR 1260

Query: 400  NSRFNREETEIFIAATPFLVKP 421
                ++E+ ++ I  T  +V+P
Sbjct: 1261 TKSESKEKRDLMIFVTVRVVEP 1282


>gi|15836975|ref|NP_297663.1| fimbrial assembly protein [Xylella fastidiosa 9a5c]
 gi|9105203|gb|AAF83183.1|AE003888_16 fimbrial assembly protein [Xylella fastidiosa 9a5c]
          Length = 637

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 104/259 (40%), Gaps = 29/259 (11%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI-------------------TGSSSGPSKSFA 231
              DQV ++  I        + +G +  +                     SS+  ++   
Sbjct: 370 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSHVTTADSSTSATRGLN 429

Query: 232 ADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
            D GG   +        +   +  +F+ +  L AL++ +    ++ P +   + +     
Sbjct: 430 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 489

Query: 289 SGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341
            G +  Y T++          +V   +  + L  TPT+ +  R+ L +     E+ + + 
Sbjct: 490 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 549

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             N G +P+   R+ +T V +  G T+V+ G+ +   +     +P L  +P LG LF+  
Sbjct: 550 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 609

Query: 402 RFNREETEIFIAATPFLVK 420
             ++++ E+ I  TP +++
Sbjct: 610 GKDKQKAELLIFVTPKVLR 628


>gi|160873279|ref|YP_001552595.1| general secretion pathway protein D [Shewanella baltica OS195]
 gi|160858801|gb|ABX47335.1| general secretion pathway protein D [Shewanella baltica OS195]
 gi|315265506|gb|ADT92359.1| general secretion pathway protein D [Shewanella baltica OS678]
          Length = 705

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 110/283 (38%), Gaps = 46/283 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFV 239
           + V+N L+I    QV ++  I EV        G Q +          +     G  G  +
Sbjct: 337 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWASKSGLGTQFNNLGPTIGEIGAGI 395

Query: 240 SEGGDF------------------------------------SVKGVLDRFSFETVLHAL 263
            +  D                                      +   +    F  ++ A+
Sbjct: 396 WQAQDVKASQTCTGSGDNQTCTDNPDTKGDVTLLAQALGKVNGMAWGVAMGDFGALIQAV 455

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHF 318
              T    LA P++T +  Q ASF  G +    T S+++ +      +V   + GV L  
Sbjct: 456 SSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERKEVGVKLKV 515

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL GL+ +++
Sbjct: 516 VPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEV 573

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           Q+  + +P L  IPI+G LF++S   + +  + I   P +++ 
Sbjct: 574 QESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKPTIIRD 616


>gi|261209946|ref|ZP_05924246.1| MSHA biogenesis protein MshL [Vibrio sp. RC341]
 gi|260841011|gb|EEX67543.1| MSHA biogenesis protein MshL [Vibrio sp. RC341]
          Length = 551

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 69/277 (24%), Positives = 111/277 (40%), Gaps = 41/277 (14%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233
           ++V   L I+ +    QV L+  I EV      + G   S   S++G      + + A D
Sbjct: 253 RQVTEFLGISQQRMQRQVILEAKILEVTLSDGYEQGINWSKAFSANGTNYQIGTGTIAQD 312

Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             G  +S             GG  +V  V+   SFE VL  +     +  L+ P +TA +
Sbjct: 313 TNGNPISSILPGLDAIGTLLGGQSNV--VVSSGSFEAVLSFMSTQGDLNVLSSPRVTASN 370

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331
            Q A    G    Y T  SS   T          ++T    G+ L  TP +   G + L 
Sbjct: 371 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDKGNVLLH 430

Query: 332 IQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +   V                 ++P  R  +R++D+ +    G  +V+ GL+K +     
Sbjct: 431 VHPAVIEVEQQTKRITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDRV 490

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 491 AKVPFLGDVPGLGHLFRNTSKQTQKTELVILLKPTVV 527


>gi|303231123|ref|ZP_07317863.1| bacterial type II and III secretion system protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514254|gb|EFL56256.1| bacterial type II and III secretion system protein [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 399

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 143/348 (41%), Gaps = 42/348 (12%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH---LEMTLRRFIADSNI 136
           ++H    MY F     Q  V + G  G +     +++E  +A    LE  ++  + +   
Sbjct: 86  MLHHLGDMYHFDIQDNQGVVTVKGDSGTKEHRHVVVVEPKVASSTSLESVIKTVVPNGKF 145

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            V   ++ +VL+      +     ++  +  +                          QV
Sbjct: 146 AVHKETNQIVLNVTGDEEKGVNSIIQSVDRDMK-------------------------QV 180

Query: 197 TLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            L+ TI  +     K+ GF+ S    TG  +  + S+ A   GK               +
Sbjct: 181 RLEATIMAMEHSYTKETGFRWSWLSLTGHGNDKTNSYGAITFGKAPDR--------EAYK 232

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHD 311
           F  +  L  LE +     +A P++ A++G++A    G +      S S G    S+   +
Sbjct: 233 FFVKPELSLLETSGKAVVIATPSIVALNGEAAHILIGERIPVIEESISNGERKRSIHYEE 292

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            G+ L +TP V   G I   I+ EVS P++ V+         R+A T V L  G  +V+ 
Sbjct: 293 VGIKLDYTPIVTKNGAIDTSIRAEVSSPIM-VSELKSYKITTRQAQTRVRLQPGEVLVIG 351

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GL+ +  Q+  E IP+L  IP+LG LFR+SR  ++  E+ I     +V
Sbjct: 352 GLMDNRDQKQIEKIPVLGDIPLLGKLFRHSRKTKDSVEMVIFVKATVV 399


>gi|120554944|ref|YP_959295.1| general secretion pathway protein D [Marinobacter aquaeolei VT8]
 gi|120324793|gb|ABM19108.1| general secretion pathway protein D [Marinobacter aquaeolei VT8]
          Length = 649

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 111/269 (41%), Gaps = 29/269 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
             +++++  L++    QV ++  I E+  ++  Q+G Q +    S+G       +     
Sbjct: 334 QEAEQIVAQLDVR-RAQVMIEAAIVEISDELGDQLGVQLAAGDESAGSFPVLGTNLTSGQ 392

Query: 239 VSEGGDFSVKGVL--------------------DRFSFETVLHALERATAIRTLAEPTLT 278
              G +  +  ++                    D  ++  ++ AL  ++A   L+ P++ 
Sbjct: 393 GMVGLNSVIGALVGDTIPQLAGGLTVGAGQRDEDGVTWGLLIQALSSSSAANLLSTPSII 452

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            +  Q +    G    ++T  S+          T++   D G+ L  TPT+ + G + L 
Sbjct: 453 TLDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERRDVGLSLKVTPTISADGLVRLV 512

Query: 332 IQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           ++          V+         R+  TTV    G T+VL GL+KDD Q  K  +PLL  
Sbjct: 513 VEQTTEDISTTSVDGASDLITNKREIKTTVLADDGETVVLGGLIKDDYQVSKSKVPLLGD 572

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP+LG LF +    R +  + +   P ++
Sbjct: 573 IPVLGRLFSSESETRVKRNLLVFLRPTIM 601


>gi|269140603|ref|YP_003297304.1| Type II secretory pathway, component HofQ [Edwardsiella tarda
           EIB202]
 gi|267986264|gb|ACY86093.1| Type II secretory pathway, component HofQ [Edwardsiella tarda
           EIB202]
 gi|304560390|gb|ADM43054.1| Type IV pilus biogenesis protein PilQ [Edwardsiella tarda FL6-60]
          Length = 409

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/271 (23%), Positives = 108/271 (39%), Gaps = 7/271 (2%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           ++  AV    T            ++ +  +  L++    QV L   I  + ++ L+++G 
Sbjct: 133 EAGSAVADIRTNALLLRAEAARLAALRDWIAQLDVPLS-QVQLAAHIVSISQEGLRELGI 191

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           +       SG         G         F V  +  + +    L ALER   +  +A P
Sbjct: 192 RWYSGDERSGGQDRLR---GAADAYFSAGFQVARIGGQ-TLAVALAALERQDKVAIIASP 247

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L A  GQ+AS   G +  Y       G +++   +  + +  TP VL+   I L +Q  
Sbjct: 248 HLMAAHGQTASIKQGSELPYAVSGGERGVSTMEFKEAVLGMSVTPRVLADAHIELALQIS 307

Query: 336 VSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            + P   V  GD  +     ++  T V L  G T +L G+ +   Q    G P L+ +P+
Sbjct: 308 QNMPGRVVRQGDSEALAIDKQEITTQVTLSDGDTAMLGGIFQYQRQVDSIGFPWLADVPL 367

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           LG L R+        E+ I  TP L+ P + 
Sbjct: 368 LGHLLRSDSQRSGRRELVIFITPTLLSPASP 398


>gi|78224554|ref|YP_386301.1| type II and III secretion system protein:NolW-like [Geobacter
           metallireducens GS-15]
 gi|78195809|gb|ABB33576.1| type II and III secretion system protein:NolW-like protein
           [Geobacter metallireducens GS-15]
          Length = 636

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 14/251 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------GG 236
           +V+  L+     QV ++  IAEV  D  K++G Q +++G  +  + + A  F      GG
Sbjct: 350 QVIQKLDKR-RRQVFVQAVIAEVSLDKAKELGLQLAVSGGGTAGNTAEAGVFDPFNFVGG 408

Query: 237 KFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
               +    +V              VL AL    A+  L+ P +     + A    G   
Sbjct: 409 ASPQQAAILNVLTGFAGSSNLQLGGVLKALISNGAVNVLSTPNILTSDNKEAEIFVGENV 468

Query: 294 LYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
            + T     S+     S+   D G+ L  TP +     + L I  E+S     V      
Sbjct: 469 PFLTQTNLTSTGLSQQSIERKDTGITLRITPQISEGEFVKLDIYQEISAVKDSVGQAKDL 528

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R A T V +    T+V+ GL++D   +    IP+L  IP+LG  F+     RE+T 
Sbjct: 529 VTTKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPILGDIPLLGWFFKTKSARREKTN 588

Query: 410 IFIAATPFLVK 420
           + I  TP +++
Sbjct: 589 LMIVLTPRIIR 599


>gi|309389127|gb|ADO77007.1| type II and III secretion system protein [Halanaerobium praevalens
           DSM 2228]
          Length = 629

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 132/323 (40%), Gaps = 44/323 (13%)

Query: 108 QMLNLDILIER-DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           +    +I ++  D   +   + +F  +  + V      ++++G       ++  ++  E 
Sbjct: 252 EPETRNIRVDYVDTEQISEIVGKFYPEIKLHVNAKRKEIIING-------AKNKLDGVEE 304

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
            +++  + QY                  QV ++  + E+  D  +++G  H+  G  +  
Sbjct: 305 LINEINKPQY------------------QVVIETRVEEISSDFSRELGIDHTDGGIFNII 346

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
            +S     G  +  E  D+S   V           AL+ +T  +TLA P L  ++G+ A+
Sbjct: 347 KESTNNADGESYKIEKLDYSWPDVF---------KALDTSTDTKTLASPKLMTLNGEEAN 397

Query: 287 FTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340
            +   +  YK V++ +     TS    + GV L FTP +     I L I   VS      
Sbjct: 398 LSILEEKPYKVVNTDSNGEKTTSWEYAEAGVELTFTPWISKNNEIELEIAPTVSSFSEIA 457

Query: 341 ---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
               G      P+ + R  +TT+ L    T  + GL++ D +     IPLL  +P+ G L
Sbjct: 458 DSQTGEGESPPPAKKSRSVETTLRLKDNETFAVGGLIQTDKEGKITKIPLLGDLPLFGEL 517

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F+    +    E+ I  TP ++K
Sbjct: 518 FKFREPSDSTNELIIFVTPHIIK 540


>gi|83648610|ref|YP_437045.1| type 4 fimbrial biogenesis protein PilQ [Hahella chejuensis KCTC
           2396]
 gi|83636653|gb|ABC32620.1| type 4 fimbrial biogenesis protein PilQ [Hahella chejuensis KCTC
           2396]
          Length = 720

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 100/272 (36%), Gaps = 50/272 (18%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---------------------------------- 220
           QV ++  I   R D ++++G Q   T                                  
Sbjct: 445 QVLIEARIVRARSDAVEELGVQWGGTRVAGNDDSGQILIGGGMESNIEASNEIARFNTEL 504

Query: 221 ------GSSSGPSKSFAADFGGKFV-------SEGGDFSVKGVLDRFSFETVLHALERAT 267
                 G ++ P     A F            +     ++         +  L A E   
Sbjct: 505 LNNRNSGDTTIPDGPTLATFPSALAVDLGVTRANTSGLAIGFSKGSTLLQMELSAFESDG 564

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A+P +     Q+A   SG +  Y+  SSS GATSV+     + L  TP +    +
Sbjct: 565 KGEIVAQPKIVTADRQTARIESGEEIPYQEASSS-GATSVSFKKAVLSLEVTPQITPDDK 623

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I + +   +++   GV   ++PS    + +T V + +G TIVL G+   +        P 
Sbjct: 624 IIMDL--VINQDSRGVVTANIPSIDTNEIETQVLVGNGETIVLGGIFTSEQSSTVTKTPF 681

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  IP LG LFR +    E +E+ +  TP L+
Sbjct: 682 LGDIPYLGRLFRKTENVNERSELLVFITPKLI 713


>gi|238760627|ref|ZP_04621755.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
 gi|238701160|gb|EEP93749.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
          Length = 657

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 107/284 (37%), Gaps = 16/284 (5%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++V+  L+I    QV ++  I EV+      +G Q               A       ++
Sbjct: 348 EQVITQLDIR-RAQVLVEAIIVEVQDSDALNLGVQWFNRNGGGSNFPDTGASASSITPND 406

Query: 242 GGDF--SVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
            G     V G+   F   ++  +  AL   +    LA P++  +    A F+ G +    
Sbjct: 407 VGSSLKGVAGLATGFYRGNWSGLFTALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPIL 466

Query: 297 TVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMP 349
           T S +T       +V   + G+ L   P +     + L I+ EVS       G       
Sbjct: 467 TGSQTTTGDNIFRTVDRKNVGIKLKVKPQINKGDSVLLEIEQEVSSVAEKAPGGTGDLGA 526

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R     V + S   +V+ GLL      +   +PLL  IP +G LFR++     +  
Sbjct: 527 TFNTRMVKNAVMVGSNNIVVVGGLLDSTSHDVTSKVPLLGDIPGIGFLFRSTSQKMVKRN 586

Query: 410 IFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFN-RVNK 450
           + +   P +++     +   ++  D +  E +        R+N+
Sbjct: 587 LMLFIRPTILREQDSYIDASNQRLDKFQQEQNTDRTTNGQRINQ 630


>gi|327482460|gb|AEA85770.1| general secretion pathway protein D [Pseudomonas stutzeri DSM 4166]
          Length = 740

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 11/234 (4%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V + V +AEV  +  + +G       +S G  +       G   S     ++  +     
Sbjct: 468 VMIDVLLAEVNINDREGLGIDWRNITASLGGKELLIGTANGLGAS---GLNISALNSAGQ 524

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVT 308
            +  L+A          + P L   SGQ A    G +    T ++ +  T       +V 
Sbjct: 525 TKAALNAFYENRQAVIRSSPKLMVRSGQEARIEVGNEIPVVTGTTQSTETGNAPITQTVQ 584

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGT 367
               GV+L   PTV + G + L++  E+SE        ++ P    RK +TT+ L  GG+
Sbjct: 585 YRKTGVLLSIKPTVQASGVVDLQVSQELSESTDTSTGENLTPVINNRKVETTLTLRDGGS 644

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           ++LAGL+  +  +   G+PLL  +P +G LF++   +   TE+ +   P++++ 
Sbjct: 645 VMLAGLISSNKGRGDTGVPLLGDLPWVGNLFKSQSASENRTELIVMIIPYIIRD 698


>gi|285019414|ref|YP_003377125.1| general secretion pathway protein d [Xanthomonas albilineans GPE
           PC73]
 gi|283474632|emb|CBA17131.1| probable general secretion pathway protein d [Xanthomonas
           albilineans]
          Length = 772

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 131/323 (40%), Gaps = 41/323 (12%)

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
           + +V L   V+  +    AVE + T L +S    +   S + V+  L++    QV ++  
Sbjct: 436 NGSVTLE--VQGDKVGVAAVEETNTLLVRSTPQAW--RSIRDVVEKLDVM-PMQVHIEAQ 490

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------------GD 244
           +AEV      Q G       S +  +   AA+  G     G                 G 
Sbjct: 491 VAEVSLTGDLQYGVNWFFENSVNASTDGSAANGTGIGRGAGLPSAAGRKIWGDIAGKIGS 550

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
             V       +   V+ AL++ T ++ L  P++   +   A+   G +    + S +TG 
Sbjct: 551 DGVGWTFLGRNAAAVITALDKVTNLKLLQTPSVFVRNNAEATLNVGTRIPINSTSINTGI 610

Query: 305 ------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350
                 +SV   D GV+L   P V   G + L I  EVS P            N  +  +
Sbjct: 611 GIDSSYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPSARPAACTAGTTNVVNTSA 670

Query: 351 ----YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
                  R+  T   + SG TI+LAGL+ D       G+P LSK+P++GALF      + 
Sbjct: 671 CNVDINTRRVKTEAAVQSGDTIMLAGLINDSTVDSSLGVPFLSKMPVIGALFGQKGQQKN 730

Query: 407 ETEIFIAATPFLVK-PVAMRDLS 428
             E+ +  TP +V+ P   R+L+
Sbjct: 731 RNEVIVLLTPTIVRDPQEARNLT 753


>gi|197121096|ref|YP_002133047.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. K]
 gi|196170945|gb|ACG71918.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. K]
          Length = 887

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 100/259 (38%), Gaps = 35/259 (13%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSFAADFGGKFVSEGG 243
            QV ++  I E   +  +Q+G Q     S           + P+    A   G+  ++G 
Sbjct: 618 PQVLIESRIVEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQSPNQGT 677

Query: 244 D----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                    +      F+    L ALE    ++T++ P +  I 
Sbjct: 678 SSTPNYAVNLPAAIGQGSGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATID 737

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            + A+   G    +   S+S    + T  +  + L  TP V + G I L+I+   + P  
Sbjct: 738 NKEATIGQGISIPFSQTSAS--GVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNS 795

Query: 342 GVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            +      PS   R+A+T V +  G T V+ G+           +P LSKIP+LG  FR+
Sbjct: 796 SLTGSNGQPSISKREAETEVLVKDGETTVIGGIYTRSTASKTASVPFLSKIPLLGFFFRS 855

Query: 401 SRFNREETEIFIAATPFLV 419
                + TE+ I  TP ++
Sbjct: 856 DTNTDDHTELLIFITPRIL 874


>gi|120612787|ref|YP_972465.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
 gi|120591251|gb|ABM34691.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
          Length = 829

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 23/258 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKFVS 240
             QV ++ +I EV  D   Q G Q +   +            ++GPS            +
Sbjct: 535 PTQVLIEASIVEVTLDDTLQYGLQWAFNNAGPSNLNGAGQLLTNGPSDKTPIGSSIPTPT 594

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS- 299
             G FS        S   VL+AL     ++ ++ P+L  +   +A  + G Q   KT S 
Sbjct: 595 SSG-FSYALSNSLGSVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTGSL 653

Query: 300 ------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSY 351
                  ++ A ++   D GV L  TP+V +   + ++I   V++ V   +      P +
Sbjct: 654 ITSVSGGNSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGSISLQPVF 713

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R+  + V + SG  IVL GL++D     K G+PLL  IP++G+LF N+      TE+ 
Sbjct: 714 QQRQITSKVAVRSGEAIVLGGLIRDTSNSSKSGVPLLQDIPLVGSLFSNNGKTGNRTELL 773

Query: 412 IAATPFLVK-PVAMRDLS 428
           +  TP +V+  + +R++S
Sbjct: 774 VVITPKVVRTDIDIREVS 791


>gi|294670682|ref|ZP_06735557.1| hypothetical protein NEIELOOT_02404 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307570|gb|EFE48813.1| hypothetical protein NEIELOOT_02404 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 711

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 110/289 (38%), Gaps = 41/289 (14%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             N +     +K++  L++    QV ++  I E      +Q+G +    GS+   S    
Sbjct: 420 TDNTFILQKFEKLIAELDVP-ARQVMVEARIVEAEDGFSRQLGVKFGYAGSNGKNSWGSN 478

Query: 232 ADFGGK--------------------------------------FVSEGGDFSVKGVLDR 253
               G                                         +     ++   L  
Sbjct: 479 WANAGANRNSYVDKQRTLANWSRNPSQDIPALPAWTVDPNVNLPIAAATSSIALVHALSS 538

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +    L A +    ++ ++ P +     + A   +G +  Y+  SSS  ATS +     
Sbjct: 539 GALGLELSAQQAQNKLKIVSTPRVLTQDRKEAIIEAGTEVPYQEASSSG-ATSTSFKKAV 597

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + +  TP +   G+I + I+           A + P    ++ +T V +  GGT++L G+
Sbjct: 598 LGMTVTPNITPDGQIIMDIKINKDSVNSDCRATE-PCINTQRLNTNVMVEDGGTLILGGI 656

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +++  +    +PLL  IP++G LF++   + ++TE+ I  TP +V  +
Sbjct: 657 YQEENSEGVSKVPLLGDIPVVGNLFKSKTRSDKKTELLIFITPRIVDNI 705


>gi|218458719|ref|ZP_03498810.1| pilus assembly secretion protein [Rhizobium etli Kim 5]
          Length = 258

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 99/241 (41%), Positives = 142/241 (58%), Gaps = 21/241 (8%)

Query: 12  MSIFLFSSNPS-VAKLPPIKEANAAVIN---ISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           ++I +    P+    L  + EA A   N   I+       +++ +GLNK +++ +P D  
Sbjct: 18  LAISVTGMAPASFGPLLTVDEARADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           D+LVSDP+ AD V  + R +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE  L
Sbjct: 78  DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------ 181
           RRFI DS I VE+VSD +VL G VRT QD+ +A +L++ FL          ++S      
Sbjct: 138 RRFIPDSAINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 197

Query: 182 -----------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
                       +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + ++ SS       
Sbjct: 198 AVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQL 257

Query: 231 A 231
            
Sbjct: 258 G 258


>gi|83943483|ref|ZP_00955942.1| general secretion pathway protein D [Sulfitobacter sp. EE-36]
 gi|83845715|gb|EAP83593.1| general secretion pathway protein D [Sulfitobacter sp. EE-36]
          Length = 631

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 161/415 (38%), Gaps = 33/415 (7%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA-DVVVH-SPR 85
            +   +A +  +     G    +  G N +++   P D+ +  +     A DV     PR
Sbjct: 183 AVTVGSAILEVLGQAGTGARLSVDAGSNLLLVRGTPEDIAE--IRSLAIAMDVAPRKDPR 240

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
                   V      L   D + + ++      D   +   +   +   +         V
Sbjct: 241 E------AVATTVFNLQYGDAQIIADIIKGTVGDATDITNAVAADVGAQSAEATSDGQFV 294

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L+ +V     +  A   + + + +    Q       ++++ L++    QV ++  I EV
Sbjct: 295 PLNRVVAPDAVNITASVETNSIVVRGTAAQV--QEVGQLVHALDVRRP-QVMIEAAIVEV 351

Query: 206 RRDILKQIGFQHSI-----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-- 252
             ++ +++G Q  +           +  S+G   S  +      V  G   S    L   
Sbjct: 352 SGEVAERLGVQLGLGPNVPNGAIAASNFSNGGGVSLGSVLAAVGVPAGSALSTGLTLGAG 411

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TS 306
              F  ++ AL ++T+ R L+ P++T +  + A+   G    ++T S +T        T+
Sbjct: 412 GNDFGILVQALSQSTSARLLSTPSVTTLDNEPATIVVGQNVPFRTGSFATDGNTATPFTT 471

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSG 365
           +   D G+ ++  P + + G + L I+ E+S      V          R  +TTV   + 
Sbjct: 472 IERRDVGITMNVVPRITAGGVVQLVIEQEISSLTNANVEGAADLVTNRRVINTTVMADNR 531

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           GT+VL GL+ DD       +P L  +P++G LF++      +  +F+   P +++
Sbjct: 532 GTVVLGGLITDDRINGSSKVPGLGDLPVVGELFKSRNARNTQRTLFVFLRPTILR 586


>gi|71276554|ref|ZP_00652828.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Dixon]
 gi|71901093|ref|ZP_00683201.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
 gi|170730937|ref|YP_001776370.1| fimbrial assembly protein [Xylella fastidiosa M12]
 gi|71162625|gb|EAO12353.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Dixon]
 gi|71729136|gb|EAO31259.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
 gi|167965730|gb|ACA12740.1| fimbrial assembly protein [Xylella fastidiosa M12]
          Length = 630

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 104/259 (40%), Gaps = 29/259 (11%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI-------------------TGSSSGPSKSFA 231
              DQV ++  I        + +G +  +                     SS+  ++   
Sbjct: 363 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTTADSSTSATRGLN 422

Query: 232 ADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
            D GG   +        +   +  +F+ +  L AL++ +    ++ P +   + +     
Sbjct: 423 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 482

Query: 289 SGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341
            G +  Y T++          +V   +  + L  TPT+ +  R+ L +     E+ + + 
Sbjct: 483 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 542

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             N G +P+   R+ +T V +  G T+V+ G+ +   +     +P L  +P LG LF+  
Sbjct: 543 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 602

Query: 402 RFNREETEIFIAATPFLVK 420
             ++++ E+ I  TP +++
Sbjct: 603 GKDKQKAELLIFVTPKVLR 621


>gi|254373092|ref|ZP_04988581.1| hypothetical protein FTCG_00669 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570819|gb|EDN36473.1| hypothetical protein FTCG_00669 [Francisella novicida GA99-3549]
          Length = 593

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 21/258 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKF 238
           K+V+N ++I   DQV ++  I EV R    ++GF + +   +G  +    +F ++     
Sbjct: 333 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 391

Query: 239 VSEGGDFSVKG-----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                   V             V      +  + ALE  +    +A P L   + Q A  
Sbjct: 392 GPTPTPTPVDTFVGTTAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVAFI 451

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGV 343
             G    Y   ++S  A +V   +  + L  TP +   G I + I    +     P    
Sbjct: 452 KDGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTP 510

Query: 344 NAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             GD+P   + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG LF  ++
Sbjct: 511 QGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTK 570

Query: 403 FNREETEIFIAATPFLVK 420
              +++E+ I  TP +++
Sbjct: 571 ITDQDSELLIFITPKIIE 588


>gi|312794853|ref|YP_004027775.1| general secretion pathway protein D [Burkholderia rhizoxinica HKI
           454]
 gi|312166628|emb|CBW73631.1| General secretion pathway protein D [Burkholderia rhizoxinica HKI
           454]
          Length = 847

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 64/314 (20%), Positives = 111/314 (35%), Gaps = 46/314 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------------GSSSGP 226
           + V++ L+     QV ++  I ++       +G Q                    +++G 
Sbjct: 400 RNVIDQLDQR-RAQVYIEAVIVDMNATSGANLGIQWQGALLSNNGNNGVYGGSNFNANGS 458

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDR------------------FSFETVLHALERATA 268
                    G  V++    +   +                     F    +L AL  ++ 
Sbjct: 459 QSIVGLSATGAIVAQDPATAAAQIGPNNLLNNGLNIGLLHRFGKVFGLGGLLQALATSSD 518

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----------HDYGVVLHF 318
              L+ P L  +  + A    G      T S +T   + TT           D G+ LH 
Sbjct: 519 TNILSTPNLITLDNEEARIVVGQNVPVVTGSYATPTANTTTSVSAFNTFDRQDVGITLHI 578

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            P +   G + L+I  E S    G  +     S   R   +TV    G  IVL GL++D+
Sbjct: 579 KPQISEGGVLKLQIYQEDSAVQQGTQSNPGGVSITKRSIQSTVLADDGEIIVLGGLIQDN 638

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSV 436
                  +P L  IP+LG+LFR+    R ++ + +   P +V+  +    L+     Y  
Sbjct: 639 YANGNSKVPWLGNIPVLGSLFRSESKTRTKSNLMVFLRPVIVRDQSTSSQLALDRYEYLR 698

Query: 437 EDDAKAFFFNRVNK 450
            + A     NR+ K
Sbjct: 699 AEQAAYQSDNRIVK 712


>gi|189424346|ref|YP_001951523.1| general secretion pathway protein D [Geobacter lovleyi SZ]
 gi|189420605|gb|ACD95003.1| general secretion pathway protein D [Geobacter lovleyi SZ]
          Length = 648

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 129/374 (34%), Gaps = 34/374 (9%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
             D   +   L   +     +   +       G V + Q S            ++  +  
Sbjct: 280 NTDATEMAKVLDGVVKGITAQTTTLQ-----AGTV-SAQSSPFDSGKVTITADKASNSLV 333

Query: 177 ANSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSI-----------T 220
             +S     NLL +         QV ++V IAE+     + +G Q               
Sbjct: 334 VMASPTDYNNLLQVIKKLDRRSKQVFVQVLIAEISPSKSRDLGVQSGAFAVGALGKYLQG 393

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276
           G    P  +F +  G    +      +   L   S       +L ALE    +  L+ P 
Sbjct: 394 GGIYDPFNTFGSLLGSGSSTSPLSTLIADKLKNTSKPVTGAAILQALESEGMLNILSTPN 453

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           +     + A    G    +K+ S+ +      SV   D G+ L   P V     I + + 
Sbjct: 454 ILTTDNKEAEINVGENVPFKSSSTQSTFGTTESVERKDIGINLKIKPQVSEGDYIRMDLY 513

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            E+S                R A T+V +    TIV+ GL++D      + +PLL  IP 
Sbjct: 514 QEISAVKSDKGDAVDLVTTKRSAKTSVVVKDNETIVIGGLIQDTEDNTIQKVPLLGDIPG 573

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS---VEDDAKAFFFNRVNK 450
           LG  F+ +   R++T + I  TP +VK    RDL+   +       E   +    N  N+
Sbjct: 574 LGWFFKTTTKTRKKTNLLIMLTPQVVK--DARDLASITESQKGKFTEAAKEFGPLNVQNE 631

Query: 451 IYGPKEASEVEGQN 464
           I G       +GQ 
Sbjct: 632 ISGKATKPVSQGQE 645


>gi|330501497|ref|YP_004378366.1| type 4 fimbrial biogenesis outer membrane protein PilQ [Pseudomonas
           mendocina NK-01]
 gi|328915783|gb|AEB56614.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas mendocina NK-01]
          Length = 704

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 107/273 (39%), Gaps = 32/273 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------- 234
           ++++  L+I    QV ++  I E   D  K +G +            ++  +        
Sbjct: 430 RRIVTQLDIP-VRQVMIEARIVEANVDYDKALGVRWGGNFWVGDKWNAWGKNGNLGVEEN 488

Query: 235 --GGKF-------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
             GG+                    V+      +  V +    +  L A+E++ +   ++
Sbjct: 489 EDGGQVGRFPGDRQTPVNTPFVDLGVAGTSGIGIGFVTNNTILDMQLSAMEKSGSGEVVS 548

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           +P +     ++A    G +  Y+  SSS   ++ +  +  + L  TP +    R+ + ++
Sbjct: 549 QPKVVTSDKETAKILKGTEVPYQESSSSGATST-SFKEAALSLEVTPQITPDNRVLMEVK 607

Query: 334 TEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
                P   +  + G +P+    + +  V +  G TIV+ G+  +   +  + +P L  +
Sbjct: 608 VTKDAPDFSVTSSTGGIPAINKNEVNAKVLVADGETIVIGGVYSNTQSKSVDKVPFLGDL 667

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P +G +FR       + E+ +  TP ++   A+
Sbjct: 668 PFVGRVFRRDLVQDRKAELLVFLTPRIMNNQAI 700


>gi|313110575|ref|ZP_07796459.1| secretion protein XqhA [Pseudomonas aeruginosa 39016]
 gi|310882961|gb|EFQ41555.1| secretion protein XqhA [Pseudomonas aeruginosa 39016]
          Length = 776

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 112/263 (42%), Gaps = 23/263 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
           + ++  L++    Q+ ++  I E+  +I   +G Q ++          FA          
Sbjct: 340 EDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLL 398

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A   GK  +E  D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G
Sbjct: 399 GALQAGKPPAELPDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVG 457

Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               ++T S +T A       T+V   D GV L  TP +     + L I+ E+S      
Sbjct: 458 QNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTA 517

Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                        R   +TV    G  IVL GL++DD+ +    +PLL  IP +G LFR+
Sbjct: 518 TLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRS 577

Query: 401 SRFNREETEIFIAATPFLVKPVA 423
           SR  R +  + +   P +V+  A
Sbjct: 578 SRETRVKRNLMVFLRPSIVRDAA 600


>gi|134096276|ref|YP_001101351.1| fimbrial assembly protein PilQ [Herminiimonas arsenicoxydans]
 gi|133740179|emb|CAL63230.1| Putative type IV pilus biogenesis secretin PilQ [Herminiimonas
           arsenicoxydans]
          Length = 697

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 118/322 (36%), Gaps = 16/322 (4%)

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           + G D     +  IL +R  A ++    +               +VL   V + Q    A
Sbjct: 386 VFGIDNSGGGSRSILSKRGSAVVDPRTNQLFITDIPSKLEEIRALVLKTDVASRQVMIEA 445

Query: 161 VEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
             + ++   S S   +      +   N+L + G+                    G   + 
Sbjct: 446 RIVEADDKFSSSLGVKLGFGLQRGRNNILEVGGQQ------------NADASAPGLNLTN 493

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             + +G + +  A             ++            L ALE     + ++ P +  
Sbjct: 494 LQTVNGNAVNLPASPLNGNTPGSVALTLFNAAATRFIGLELSALEADGKGKIISSPRVIT 553

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
                A    G +  Y+  +SS GATSV+     + L  TP +   G + L +  +V++ 
Sbjct: 554 ADQLKALIEQGTELPYQQATSS-GATSVSFRKANLRLEVTPQITPDGNVILDV--DVNKD 610

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            +GV      +   +   T V + +GGT+V+ G+ +   +     +P    IP+LG LF+
Sbjct: 611 SVGVETRSGFAIDTKHVKTQVLIDNGGTVVIGGIFQQTERDSVSKVPFFGDIPVLGNLFK 670

Query: 400 NSRFNREETEIFIAATPFLVKP 421
            +    ++TE+ I  TP ++  
Sbjct: 671 TTGRTNDKTELLIFLTPKILND 692


>gi|91787225|ref|YP_548177.1| type II and III secretion system protein [Polaromonas sp. JS666]
 gi|91696450|gb|ABE43279.1| type II and III secretion system protein [Polaromonas sp. JS666]
          Length = 747

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 140/391 (35%), Gaps = 52/391 (13%)

Query: 101 LIGHDGKQMLNLDILI----ERDIAHLEMTLRRFIADSNIRVEMVSDTVV---LHGMVRT 153
            IG  G    + +I +      D   L  TLR  +A + +        V    L G    
Sbjct: 298 AIGGSGADPASGNIYVVYLKNADATKLATTLRAAMAANTLGAIAAGPVVTGAPLPGPGSV 357

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSS--------------KKVMNLLNIAGEDQVTLK 199
                    L+ +  S  G+ Q   S++              + V++ L+ A   QV ++
Sbjct: 358 AAAGAATATLTSSQPSTGGQIQADPSTNSLIITAPEPLYRQLRAVIDKLD-ARRAQVFVE 416

Query: 200 VTIAEVRRDILKQIGFQHSIT----GSSSGPSKSFAADFGGKFV--------------SE 241
             IAEV  D   + G Q        G ++        + GG  +              S 
Sbjct: 417 SLIAEVNADKAAEFGIQFQGALGKKGDNNIGLLGTNFNIGGTNIITLATQAAAGVIAPST 476

Query: 242 GGDFSVKGVLDRFSFETVL-HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           G +  V  + +       L   LE   A   L+ P L  +  + A    G    + T   
Sbjct: 477 GANLGVAHLTNGVYVLGFLARFLEANGAGNILSTPNLLTLDNEEARIVIGQNVPFITGQY 536

Query: 301 STGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPS 350
           +   T         ++   D G+ L   P +   G + ++I  EVS      +N+     
Sbjct: 537 TNANTSAGSVNPFQTIERKDVGLTLRVKPQISENGTVKMQIFQEVSSVQPSSINSATGLI 596

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R  ++ V +  G  +VL GLL+D+     E +P L  IPILG LF+    +R++T +
Sbjct: 597 TNKRSIESNVLVDDGAIVVLGGLLQDEYSGNVEKVPGLGDIPILGHLFKGETRSRKKTNL 656

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
            +   P +V+     + S   D Y +    +
Sbjct: 657 MVFLRPVVVRDAPSSE-SLSMDRYDLMRAVQ 686


>gi|116049822|ref|YP_791371.1| secretion protein XqhA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585043|gb|ABJ11058.1| secretion protein XqhA [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 776

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 112/263 (42%), Gaps = 23/263 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
           + ++  L++    Q+ ++  I E+  +I   +G Q ++          FA          
Sbjct: 340 EDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLL 398

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A   GK  +E  D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G
Sbjct: 399 GALQAGKPPAELPDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVG 457

Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               ++T S +T A       T+V   D GV L  TP +     + L I+ E+S      
Sbjct: 458 QNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTA 517

Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                        R   +TV    G  IVL GL++DD+ +    +PLL  IP +G LFR+
Sbjct: 518 TLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRS 577

Query: 401 SRFNREETEIFIAATPFLVKPVA 423
           SR  R +  + +   P +V+  A
Sbjct: 578 SRETRVKRNLMVFLRPSIVRDAA 600


>gi|114331780|ref|YP_748002.1| type IV pilus secretin PilQ [Nitrosomonas eutropha C91]
 gi|114308794|gb|ABI60037.1| type IV pilus secretin PilQ [Nitrosomonas eutropha C91]
          Length = 720

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 105/261 (40%), Gaps = 39/261 (14%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG-------GKFVS 240
            QV ++  I E      + +G +  +         ++G     + + G       G    
Sbjct: 451 RQVMIETRIVEATDTFSRNLGARFGVQNATRIGSQTNGRRLGISGNLGNSSELAAGTISP 510

Query: 241 EGGD----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            GGD                       S+  + +       L ALE  +  R +A P L 
Sbjct: 511 SGGDNLNVNLPAAALAGVAGGPAALGLSLIKINNGTLINLELSALESDSQGRIIASPRLV 570

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
             +   AS   G +  ++T+S +     +      + L  TP +     I +++Q  V++
Sbjct: 571 TANRVEASIEQGTEIPFQTISVTRP--QIQFKKAVLGLKVTPQITPDDNIIMKLQ--VNQ 626

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G +    P+   ++  T V + +GGT+V+ G+ +   ++ +  IPLL  +P+LG LF
Sbjct: 627 DTRGESTPAGPAIDTKQIVTEVLVENGGTVVIGGIFEQVEKRDRNQIPLLGDVPLLGNLF 686

Query: 399 RNSRFNREETEIFIAATPFLV 419
           +N+    ++ E+ I  TP ++
Sbjct: 687 KNTAKRDDKRELLIFVTPRIL 707


>gi|296389736|ref|ZP_06879211.1| secretion protein XqhA [Pseudomonas aeruginosa PAb1]
          Length = 776

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 112/263 (42%), Gaps = 23/263 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
           + ++  L++    Q+ ++  I E+  +I   +G Q ++          FA          
Sbjct: 340 EDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLL 398

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A   GK  +E  D ++ G+  R  F  ++ AL R +    L+ P+L  +  Q A    G
Sbjct: 399 GALQAGKPPAELPDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVG 457

Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
               ++T S +T A       T+V   D GV L  TP +     + L I+ E+S      
Sbjct: 458 QNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTA 517

Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                        R   +TV    G  IVL GL++DD+ +    +PLL  IP +G LFR+
Sbjct: 518 TLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRS 577

Query: 401 SRFNREETEIFIAATPFLVKPVA 423
           SR  R +  + +   P +V+  A
Sbjct: 578 SRETRVKRNLMVFLRPSIVRDAA 600


>gi|153825669|ref|ZP_01978336.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-2]
 gi|229520028|ref|ZP_04409457.1| MSHA biogenesis protein MshL [Vibrio cholerae TM 11079-80]
 gi|297580540|ref|ZP_06942466.1| MSHA biogenesis protein MshL [Vibrio cholerae RC385]
 gi|149740699|gb|EDM54806.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-2]
 gi|229342977|gb|EEO07966.1| MSHA biogenesis protein MshL [Vibrio cholerae TM 11079-80]
 gi|297534956|gb|EFH73791.1| MSHA biogenesis protein MshL [Vibrio cholerae RC385]
          Length = 559

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 105/275 (38%), Gaps = 37/275 (13%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++V   L I+ +    QV L+  I EV      Q G   S   SS+G S +  +    + 
Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQD 320

Query: 239 VSEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
            S     SV                 V+   SF+ V+  +     +  L+ P +TA + Q
Sbjct: 321 SSGNPITSVLPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQ 380

Query: 284 SASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            A    G    Y T  SS   T          ++T    G+ L  TP +   G + L + 
Sbjct: 381 KAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVH 440

Query: 334 TEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             V E                  +    +R++D+ +    G  +V+ GL+K +       
Sbjct: 441 PAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSK 500

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 501 VPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535


>gi|327483259|gb|AEA77666.1| MSHA biogenesis protein MshL [Vibrio cholerae LMA3894-4]
          Length = 559

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 68/277 (24%), Positives = 108/277 (38%), Gaps = 41/277 (14%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233
           ++V   L I+ +    QV L+  I EV      Q G   S   SS+G      S S   D
Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQD 320

Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             G  ++             GG  +V  V+   SF+ V+  +     +  L+ P +TA +
Sbjct: 321 SNGNPITSVLPGLDAIGNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 378

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331
            Q A    G    Y T  SS   T          ++T    G+ L  TP +   G + L 
Sbjct: 379 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 438

Query: 332 IQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +   V E                  +    +R++D+ +    G  +V+ GL+K +     
Sbjct: 439 VHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 498

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 499 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535


>gi|109899541|ref|YP_662796.1| type II and III secretion system protein [Pseudoalteromonas
           atlantica T6c]
 gi|109701822|gb|ABG41742.1| type II and III secretion system protein [Pseudoalteromonas
           atlantica T6c]
          Length = 711

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 123/274 (44%), Gaps = 20/274 (7%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           V+  L+      V ++V +AEV+ +  +  G +  +  SS G     ++  GG  +   G
Sbjct: 441 VIKKLDKPAAS-VMVEVILAEVQLNDSEDTGVEW-LANSSLGRFGITSSTIGGLGLGASG 498

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F++  +        +L+   +       + P L   SG  AS   G +    T +S + 
Sbjct: 499 -FNMT-LDSAGQTRAMLNLFYKNEKANIRSRPRLMVKSGGEASIDVGNEIPVITSNSQST 556

Query: 304 A-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRK 355
                    +++    GV+L   PTV + G + + I  E+SE     ++  D P+   RK
Sbjct: 557 TDSDAVVLQTISYRKTGVLLEVKPTVHASGFVDIEITQELSEATETSSSDIDSPTILNRK 616

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             TTV L  GG+++L GL+        +G+P+L ++P++G LF      ++ TE+ I   
Sbjct: 617 ISTTVTLRDGGSVLLGGLISSTTSTGTQGVPILGRLPMIGKLFSTDSNAQDRTELMIMII 676

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           P++        L+ PD+   + D+ +    ++++
Sbjct: 677 PYI--------LNSPDEAEQLTDELQKARIDKLS 702


>gi|170695725|ref|ZP_02886867.1| type IV pilus secretin PilQ [Burkholderia graminis C4D1M]
 gi|170139330|gb|EDT07516.1| type IV pilus secretin PilQ [Burkholderia graminis C4D1M]
          Length = 581

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 15/242 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFGGK----F 238
               QV ++  I E      + +G + S+ G+S        SG      AD   +    F
Sbjct: 341 RPTRQVLIEARIVEGEHGFSRNLGVRLSMAGTSADGTTRGLSGGKDGLVADLSARPIAGF 400

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++            L ALE       ++ P +       A    G +  Y+  
Sbjct: 401 DAATAGLTLFAAGATRLLNIELSALEAEGRGEVVSSPRVVTADRMKAVVEQGTELPYQ-A 459

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P ++  GR+ L +           +AG  P+   +   T
Sbjct: 460 KVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGEQTDAG--PAINTKHVQT 517

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+  GGT+ + G+   D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 518 RVEVEDGGTVSIGGIYATDGRDDVTRVPLLGKIPVLGALFRHRAHRDQRSELAVFITPRV 577

Query: 419 VK 420
           V+
Sbjct: 578 VQ 579


>gi|15640429|ref|NP_230056.1| MSHA biogenesis protein MshL [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587598|ref|ZP_01677363.1| MSHA biogenesis protein MshL [Vibrio cholerae 2740-80]
 gi|121727263|ref|ZP_01680422.1| MSHA biogenesis protein MshL [Vibrio cholerae V52]
 gi|147674773|ref|YP_001218670.1| MSHA biogenesis protein MshL [Vibrio cholerae O395]
 gi|153802215|ref|ZP_01956801.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-3]
 gi|153818263|ref|ZP_01970930.1| MSHA biogenesis protein MshL [Vibrio cholerae NCTC 8457]
 gi|153822274|ref|ZP_01974941.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
 gi|227080613|ref|YP_002809164.1| MSHA biogenesis protein MshL [Vibrio cholerae M66-2]
 gi|229507042|ref|ZP_04396548.1| MSHA biogenesis protein MshL [Vibrio cholerae BX 330286]
 gi|229508803|ref|ZP_04398295.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
 gi|229519791|ref|ZP_04409234.1| MSHA biogenesis protein MshL [Vibrio cholerae RC9]
 gi|229606316|ref|YP_002876964.1| MSHA biogenesis protein MshL [Vibrio cholerae MJ-1236]
 gi|254226017|ref|ZP_04919617.1| MSHA biogenesis protein MshL [Vibrio cholerae V51]
 gi|254850634|ref|ZP_05239984.1| MSHA biogenesis protein MshL [Vibrio cholerae MO10]
 gi|255743787|ref|ZP_05417744.1| MSHA biogenesis protein MshL [Vibrio cholera CIRS 101]
 gi|262153600|ref|ZP_06028728.1| MSHA biogenesis protein MshL [Vibrio cholerae INDRE 91/1]
 gi|262167634|ref|ZP_06035338.1| MSHA biogenesis protein MshL [Vibrio cholerae RC27]
 gi|298501065|ref|ZP_07010866.1| MSHA biogenesis protein MshL [Vibrio cholerae MAK 757]
 gi|9654823|gb|AAF93575.1| MSHA biogenesis protein MshL [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548171|gb|EAX58243.1| MSHA biogenesis protein MshL [Vibrio cholerae 2740-80]
 gi|121630382|gb|EAX62777.1| MSHA biogenesis protein MshL [Vibrio cholerae V52]
 gi|124122239|gb|EAY40982.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-3]
 gi|125621473|gb|EAZ49807.1| MSHA biogenesis protein MshL [Vibrio cholerae V51]
 gi|126511222|gb|EAZ73816.1| MSHA biogenesis protein MshL [Vibrio cholerae NCTC 8457]
 gi|126520230|gb|EAZ77453.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
 gi|146316656|gb|ABQ21195.1| MSHA biogenesis protein MshL [Vibrio cholerae O395]
 gi|227008501|gb|ACP04713.1| MSHA biogenesis protein MshL [Vibrio cholerae M66-2]
 gi|227012257|gb|ACP08467.1| MSHA biogenesis protein MshL [Vibrio cholerae O395]
 gi|229344480|gb|EEO09455.1| MSHA biogenesis protein MshL [Vibrio cholerae RC9]
 gi|229354206|gb|EEO19137.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
 gi|229355787|gb|EEO20707.1| MSHA biogenesis protein MshL [Vibrio cholerae BX 330286]
 gi|229368971|gb|ACQ59394.1| MSHA biogenesis protein MshL [Vibrio cholerae MJ-1236]
 gi|254846339|gb|EET24753.1| MSHA biogenesis protein MshL [Vibrio cholerae MO10]
 gi|255738536|gb|EET93924.1| MSHA biogenesis protein MshL [Vibrio cholera CIRS 101]
 gi|262023970|gb|EEY42667.1| MSHA biogenesis protein MshL [Vibrio cholerae RC27]
 gi|262030627|gb|EEY49263.1| MSHA biogenesis protein MshL [Vibrio cholerae INDRE 91/1]
 gi|297540313|gb|EFH76373.1| MSHA biogenesis protein MshL [Vibrio cholerae MAK 757]
          Length = 559

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 68/277 (24%), Positives = 108/277 (38%), Gaps = 41/277 (14%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233
           ++V   L I+ +    QV L+  I EV      Q G   S   SS+G      S S   D
Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQD 320

Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             G  ++             GG  +V  V+   SF+ V+  +     +  L+ P +TA +
Sbjct: 321 SNGNPITSVLPGLDAIGNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 378

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331
            Q A    G    Y T  SS   T          ++T    G+ L  TP +   G + L 
Sbjct: 379 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 438

Query: 332 IQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +   V E                  +    +R++D+ +    G  +V+ GL+K +     
Sbjct: 439 VHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 498

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 499 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535


>gi|82703023|ref|YP_412589.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
 gi|82411088|gb|ABB75197.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
          Length = 789

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 36/280 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAAD 233
           + V+  L++    QV ++  IAE+  D   + G Q           T    G + +    
Sbjct: 440 RAVVEKLDVR-RVQVYIEALIAEITADRAAEFGIQWQNLSNAAQGGTQVFGGTNFNAGTA 498

Query: 234 FGGKFVS------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
            GG  +S                   G   ++ G+    +  T++ ALE       L+ P
Sbjct: 499 GGGSIISTAQNPIANAASGLTIGIMNGLVTAIPGIGPVLNIHTLIRALETDANANILSTP 558

Query: 276 TLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           TL  ++ + A    G      T           ++   +V+  D G+ L   P +     
Sbjct: 559 TLLTLNNEEARIIIGQNVPIPTGQFIPPVGGAVTSPFQTVSRQDVGLSLKIKPLISEGNT 618

Query: 328 IGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           + ++I  EVS  V G VNA +      R  ++TV +  G  +VL GL++D +    E IP
Sbjct: 619 VRVQIFQEVSSVVPGTVNATNGLITNKRSIESTVLVDDGQILVLGGLMQDSVNDSVERIP 678

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L+  IP+ G LF  ++ +R +T + +   P L++     D
Sbjct: 679 LVGAIPLFGQLFSYNKRSRNKTNLMVFLRPTLMRAGDAAD 718


>gi|126666716|ref|ZP_01737693.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter sp. ELB17]
 gi|126628761|gb|EAZ99381.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter sp. ELB17]
          Length = 705

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 147/364 (40%), Gaps = 49/364 (13%)

Query: 105 DGKQMLNLDILIERDIAHLEMTL-----RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           D +Q+ N+ ++   D       L     ++    + +R++++         V  +  + +
Sbjct: 348 DKRQIGNVLLVAPADEIAARERLELETTKQIAELAPLRLDIIQVNYAKAAEVVALVQADQ 407

Query: 160 AVELSETFLSQSGRNQYAN--------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            +  S  F+S   R    +        +  +++++  ++A   QV+++  I   + ++ +
Sbjct: 408 ELISSRGFISSDSRTNTISVRETVEKLNEIRRLVSTWDVA-VRQVSIEARIVRAQTNVAE 466

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---------------------------- 243
            +G +    G+S G + + +   GG   + GG                            
Sbjct: 467 SLGVRWG--GASYGNNGNNSTVVGGSLETVGGVMGAGAANSTSVTFPGALAVDLGVSGDG 524

Query: 244 --DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              F+V      F  +  L ALE       +++P +     Q+AS  SG +  ++  SSS
Sbjct: 525 ASSFAVGFSGGDFLVDLELSALESDGKAEIVSQPRVVTADRQTASIKSGQEIPFQEASSS 584

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
              ++ +  +  + L  TP +    +I + +  EV++   G +  + P+       T V 
Sbjct: 585 GATST-SFKEAVLSLEVTPQITPDDKIIMDL--EVTQDSRGEDTPNGPAINTNSVTTQVL 641

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + +G TIVL G+ +    +     P L  IP LG LF+ ++     +E+ I  TP ++K 
Sbjct: 642 VANGETIVLGGIFESTNTETTTKTPFLGDIPYLGRLFKRTQTTELRSELLIFITPKIIKN 701

Query: 422 VAMR 425
             +R
Sbjct: 702 DLVR 705


>gi|71908829|ref|YP_286416.1| type II and III secretion system secretin [Dechloromonas aromatica
           RCB]
 gi|71848450|gb|AAZ47946.1| type II and III secretion system protein:NolW-like:Secretin/TonB,
           short N-terminal [Dechloromonas aromatica RCB]
          Length = 667

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 122/316 (38%), Gaps = 21/316 (6%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           V+T+  S+      +  L        A    +++++ L++A  + V L+V + EV R  L
Sbjct: 289 VKTVAKSKDVFADEKLNLLIVKDTPDAMRLVERLIDSLDLAEPE-VMLEVEVLEVTRSRL 347

Query: 211 KQIGFQHSITGSSS------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRF--SF 256
            Q G     +                    +     GG   +   +   +G L  F  + 
Sbjct: 348 NQFGVDWPDSVGYGLLQDTLSTTTATAAGYTTTVTPGGTLANGYINLRNRGGLTSFVANP 407

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYG 313
              L+   +      LA P +   + + A    G +    T +++     + SV   D G
Sbjct: 408 GLTLNLKGQNADTNVLANPRIRVKNREKAKVHIGDKLPVFTTTATANVGVSASVNYLDVG 467

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELPSGGTIVL 370
           + L   P V     + +++  EVS  V  +             R A TT+ L  G T VL
Sbjct: 468 LKLDVEPNVTLDDEVSIKVGLEVSSIVKEITGPSNSLAYQIGTRSASTTLRLKDGETQVL 527

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGL+ D+ ++    IP L +IP++G  F + +    +TEI +  TP +V+ +   +  +P
Sbjct: 528 AGLISDEERKTTSHIPGLGEIPVVGRAFGSHKDTSTKTEIILLITPRIVRNIHRPEYVQP 587

Query: 431 DDHYSVEDDAKAFFFN 446
                 E+   A    
Sbjct: 588 VISSGTENAVGAAPMG 603


>gi|254291307|ref|ZP_04962101.1| MSHA biogenesis protein MshL [Vibrio cholerae AM-19226]
 gi|150422763|gb|EDN14716.1| MSHA biogenesis protein MshL [Vibrio cholerae AM-19226]
          Length = 559

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 105/275 (38%), Gaps = 37/275 (13%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++V   L I+ +    QV L+  I EV      Q G   S   SS+G S +  +    + 
Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGAITQD 320

Query: 239 VSEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
            S     SV                 V+   SF+ V+  +     +  L+ P +TA + Q
Sbjct: 321 SSGNPITSVLPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQ 380

Query: 284 SASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            A    G    Y T  SS   T          ++T    G+ L  TP +   G + L + 
Sbjct: 381 KAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVH 440

Query: 334 TEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             V E                  +    +R++D+ +    G  +V+ GL+K +       
Sbjct: 441 PAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSK 500

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 501 VPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535


>gi|284047888|ref|YP_003398227.1| type II and III secretion system protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952109|gb|ADB46912.1| type II and III secretion system protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 405

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 109/244 (44%), Gaps = 13/244 (5%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               Q+TL+  I  +     +++G Q   +    G  K     FGG+           G 
Sbjct: 160 RPTRQITLEARILSLGESASRELGLQWDWSALPEGRKKG-EGGFGGRLH--------LGH 210

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVT 308
               SF+  L AL +    + LA P +  + G+ AS   G      T  V++ST  ++  
Sbjct: 211 SYGASFQARLSALCQEGKAKVLATPRIITLPGREASIFIGDHIPVVTEKVTNSTTTSTTE 270

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             D G+ L +TP +   G I  ++ TEVS P +     +      R ADT V L    T+
Sbjct: 271 YVDAGIRLSYTPYLSQDGLITAKVHTEVSTPTLIAELKNY-RITSRTADTHVRLREKETL 329

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDL 427
           V+ GL+ +  Q   E IPLLSK+P+LG LF+    +R  TE+ +  TP+L  P   +   
Sbjct: 330 VIGGLISEQEQHRMEAIPLLSKLPLLGELFKFRSRSRNRTEVCMFLTPYLSGPGQPLPAA 389

Query: 428 SRPD 431
             PD
Sbjct: 390 VLPD 393


>gi|262273882|ref|ZP_06051695.1| MSHA biogenesis protein MshL [Grimontia hollisae CIP 101886]
 gi|262222297|gb|EEY73609.1| MSHA biogenesis protein MshL [Grimontia hollisae CIP 101886]
          Length = 533

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 116/298 (38%), Gaps = 26/298 (8%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           + GM+ T  D +  V   +  L             K+ ++      + QV L+  + EV 
Sbjct: 214 VSGMIGT-GDGRSIVISPQAGLITVKAYPNELREVKRFLDASQKRLKRQVILEAKVLEVT 272

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                Q G   S  G+S G      +       G  +S          +   +F +V++ 
Sbjct: 273 LSDGYQQGVNWSNIGASIGSGGINISRPETKLAGDMISNVIGGQTNITITDGNFSSVMNF 332

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----------SSSTGATSVTTHDY 312
           L+    +  L+ P +TA + Q A    GG   + T           S S     +T    
Sbjct: 333 LDTQGDVNVLSSPRVTAANNQKAVIKVGGDEYFVTDISSSDTSGDNSDSGPNIELTPFFS 392

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRKADTTVE 361
           G++L  TP +     + L +   V + V       + +             +R++D+ + 
Sbjct: 393 GILLDVTPQIDDDNGVLLHVHPAVVDVVTEEKTIQLGTSSEPYVLPLAKTAIRESDSVIH 452

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             SG  +V+ GL+K   +++   +PLL  IP LG LFRN    +++TE+ I   P +V
Sbjct: 453 ARSGDVVVIGGLMKSSYEEVVSKVPLLGDIPGLGHLFRNVNRMKQKTELVILLQPSVV 510


>gi|226953742|ref|ZP_03824206.1| fimbrial assembly protein PilQ [Acinetobacter sp. ATCC 27244]
 gi|226835474|gb|EEH67857.1| fimbrial assembly protein PilQ [Acinetobacter sp. ATCC 27244]
          Length = 590

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 97/281 (34%), Gaps = 38/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228
           +K+++LL+++   QV ++  I     D  K++G +  I       +              
Sbjct: 311 RKMVDLLDVS-VKQVMIEARIVRASTDFTKEMGVKWGILSQGITRNNDLLVGGSDTTLWN 369

Query: 229 ---------------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                +   D G               L  F  +  L A++   
Sbjct: 370 LREPKKDSETGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAVQADG 429

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               ++ P +     Q A   SG +  Y   T   +         D  + L  TP++   
Sbjct: 430 FGEVISTPKVMTADKQPAKIESGTKIPYASSTGGGANAVPKTEFIDATLSLDVTPSITPD 489

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G++ +++      P      G + +      DT V + +G T+VL G+ + +    +  +
Sbjct: 490 GKVMMKLNIAKDAPGAPTPTGQL-TISKNSIDTNVLVDNGETVVLGGIFEQENLSSQIKV 548

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P L  +P +G LFR       + E+ I  TP +V     R+
Sbjct: 549 PFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTRN 589


>gi|254283571|ref|ZP_04958539.1| general secretion pathway protein D [gamma proteobacterium NOR51-B]
 gi|219679774|gb|EED36123.1| general secretion pathway protein D [gamma proteobacterium NOR51-B]
          Length = 682

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 109/281 (38%), Gaps = 40/281 (14%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------ 232
           ++ + V+  L+I    QV ++  I E+     +++G Q      S     + +       
Sbjct: 342 AALEAVIARLDIR-RAQVLVEAIIVEMEVVEGQELGLQWLFANDSGFYGSNISTSSAQRA 400

Query: 233 -----------------------DFGGKFVS-EGGDFSVKGVLDRFSFETVLHALERATA 268
                                  D  G      G       V D  +   +L+ALE    
Sbjct: 401 RNAAIADAILPGDGDSSGDIGITDLAGALSQVPGATLGWGAVDDDLTMTVILNALETQGN 460

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFT 319
              L+ P+L  +  + A  T G Q  + T S +   +         ++   + G+ L  T
Sbjct: 461 ANILSTPSLLTLDNEEAYITVGQQVPFVTGSFTNTGSGDSARNPFQTIERQNVGITLKVT 520

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P V     + L I  EVS     +          RK +T V    G  +VL GL+KD++Q
Sbjct: 521 PQVNEGDSVVLDIVQEVSSISQQLLVASDVITNERKIETKVLASDGDIVVLGGLVKDEVQ 580

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             ++G+P+LS IP+LG LFRN      ++ + +   P +V+
Sbjct: 581 DSQQGVPILSSIPLLGRLFRNDVVEVSKSNLLVFIRPTIVR 621


>gi|149190625|ref|ZP_01868893.1| type II secretory pathway, component EpsD [Vibrio shilonii AK1]
 gi|148835508|gb|EDL52477.1| type II secretory pathway, component EpsD [Vibrio shilonii AK1]
          Length = 674

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 107/287 (37%), Gaps = 45/287 (15%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKS------ 229
           +++  L+I    QV ++  I E+       +G Q         +  S++G S        
Sbjct: 334 EIIKQLDIR-RAQVLIEALIVELADVDGANLGVQWGNASAGSVVQFSNTGASIGNVMVGM 392

Query: 230 -------------------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
                                     + D+     +  G       +    +  ++ A+ 
Sbjct: 393 EEAKDKTTTETRYRADGTPYNVETKTSGDYTKLASALSGVQGAAVGIALGDWTALITAVS 452

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFT 319
             +    L+ P++T +    ASF  G +    T S++         +V   + G+ L   
Sbjct: 453 STSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSNNSNPFQTVDRKEVGIKLKVV 512

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + L I+ EVS  V+G N      +  R+ +T+V +  G  +VL GL+ +   
Sbjct: 513 PQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLIDERAA 571

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + +  +P L  IP LG LF ++    E+  + +   P +++     D
Sbjct: 572 ESESKVPFLGDIPYLGRLFTSTSTTVEKKNLMVFIKPTIIRDGMTSD 618


>gi|148546330|ref|YP_001266432.1| general secretion pathway protein D [Pseudomonas putida F1]
 gi|148510388|gb|ABQ77248.1| general secretion pathway protein D [Pseudomonas putida F1]
          Length = 584

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 104/267 (38%), Gaps = 26/267 (9%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ + ++  L+I    QV ++  IAEV     +++G Q        G         G   
Sbjct: 272 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 330

Query: 239 --------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                                + G    +      F+F  +++AL+  +    L+ PTL 
Sbjct: 331 ASIAGAAASGDSEALGDLLSTTTGATAGIGHFGGGFNFAMLINALKGKSGFNLLSTPTLL 390

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    AS   G +  + T S +        ++   + GV L   P +     + L I  
Sbjct: 391 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQ 450

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           EVS      +A D+ +   R+  T V +   G ++L GL+ D++    + +PLL  IP L
Sbjct: 451 EVSSIADTSSASDVIT-NKREIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYL 509

Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421
           G LFR+      +  + +   P +++ 
Sbjct: 510 GRLFRSDATRNTKQNLMVFIRPRILRD 536


>gi|325927911|ref|ZP_08189135.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           perforans 91-118]
 gi|325541751|gb|EGD13269.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           perforans 91-118]
          Length = 624

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 105/266 (39%), Gaps = 28/266 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228
           +++++ ++    DQV ++  I        + +G +  + G+ +                 
Sbjct: 354 RELISHIDRP-VDQVLIEGRIVIATDTFARDLGAKFGLGGTHTYGDNVATIGSGATGGGV 412

Query: 229 ----SFAADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                   +      + G      +   +   F+ +  L AL++      ++ P +   +
Sbjct: 413 AAGRGLNVNLPTGAFTSGATAPSLAYTLLGSNFNLDLELSALQQEGRGEVISNPRIVTSN 472

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            +      G +  Y TV+  TG      +V   +  + L  TPT+ +  R+ L +  +  
Sbjct: 473 QREGVIKQGREIGYVTVTGGTGGQAATPNVQFKEVLLELKVTPTITNDNRVFLNMNVKKD 532

Query: 338 EPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           E    +     G +PS   R+ +T V +  G T+V+ G+ +   +     +P L  +P L
Sbjct: 533 EVDQLIELPLYGTVPSINRREINTAVLVDDGQTVVIGGVYEFTDRASVNKVPFLGDVPFL 592

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G LF++    + + E+ +  TP +++
Sbjct: 593 GNLFKSRGRQKSKAELLVFITPKVLR 618


>gi|262377049|ref|ZP_06070275.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
 gi|262308087|gb|EEY89224.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
          Length = 710

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 106/281 (37%), Gaps = 39/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228
           + +++LL++    QV ++  I     +  K++G +  I       +              
Sbjct: 432 RNMVDLLDV-QVKQVMVEARIVRASTEFAKEMGVKWGILSQGITNNDHLLVGGSDTTLWD 490

Query: 229 ---------------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                +   D G +  +    F +  + D F  +  L AL+   
Sbjct: 491 LRTPEINSTTGIPTYEIQRPDNLNVDLGVENAAGRIAFGLISLSD-FMLDLELSALQADG 549

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVLSP 325
               ++ P +     Q A+  SG +  Y++   S +    +    D  + L  TP++   
Sbjct: 550 YGEVISTPKVLTADKQKATVESGVEVPYQSTEGSGANATATTEFKDVVLKLDVTPSITPD 609

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G++ + +    S+ + GV           + +T V + +G T+VL G+ + +    +  +
Sbjct: 610 GKVQMSLDIS-SDSIAGVTPMGEYYLNKNRLNTNVLVENGETVVLGGIFEQETLNNQTKV 668

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P L  IP LG LFR    +  + E+ I  TP +V     R+
Sbjct: 669 PFLGDIPYLGRLFRKDVKSDNKRELLIFVTPRIVNDSVSRN 709


>gi|238796139|ref|ZP_04639650.1| General secretion pathway protein D [Yersinia mollaretii ATCC
           43969]
 gi|238720084|gb|EEQ11889.1| General secretion pathway protein D [Yersinia mollaretii ATCC
           43969]
          Length = 625

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 113/296 (38%), Gaps = 22/296 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192
           +L G+    Q+ + +   +   +        A +++             ++V+  L+I  
Sbjct: 271 ILTGVSSNQQEGKSSSAPAVAMMKNVVIKADAQTNALIINATPDLLRDLEQVITQLDIR- 329

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
             QV ++  I EV+ D    +G Q S   G  S    + A+       S  G   +    
Sbjct: 330 RAQVLVEAIIVEVQDDDNLSLGVQWSNQHGGGSNFPDTGASASNAIASSLKGVTGLATGF 389

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSV 307
            R ++  +  AL        LA P++  +    A F+ G +    + S +T       +V
Sbjct: 390 YRGNWSGLFTALRTNNQNDILATPSIVTLDNMEAEFSVGQEVPVLSGSQTTTGDNIFRTV 449

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPS 364
                G+ L   P +     + L I+ EVS       +G      ++  R     V + S
Sbjct: 450 DRKSVGIKLKVKPQINKGDSVLLEIEQEVSSVAAKAPSGTGDLGATFNSRTVKNAVMVGS 509

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              +V+ GLL    Q +   +PLL  IP +G LFR++     +  + +   P +++
Sbjct: 510 NNIVVVGGLLDSTSQDITSKVPLLGDIPGVGFLFRSTTQKMVKRNLMLFIRPTIIR 565


>gi|167626079|ref|YP_001676373.1| general secretion pathway protein D [Shewanella halifaxensis
           HAW-EB4]
 gi|167356101|gb|ABZ78714.1| general secretion pathway protein D [Shewanella halifaxensis
           HAW-EB4]
          Length = 720

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 109/280 (38%), Gaps = 43/280 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 394

Query: 236 -------GKFVSEGGD---------------------FSVKGVLDRFSFETVLHALERAT 267
                  G  V   G                        +   +    F  ++ A+   T
Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDT 454

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPT 321
               LA P++T +  Q ASF  G +    T S ++         +V   + GV L   P 
Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           V     + L I+ EVS   I    G   ++  R+  TTV   SG  +VL GL+K+++Q+ 
Sbjct: 515 VNEGNAVKLTIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLIKEEVQES 572

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            + +P L  IPI+G LF++S   +++T + +   P +++ 
Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKTNLMVFIKPTIIRD 612


>gi|85712729|ref|ZP_01043774.1| Type II secretory pathway, component PulD [Idiomarina baltica
           OS145]
 gi|85693461|gb|EAQ31414.1| Type II secretory pathway, component PulD [Idiomarina baltica
           OS145]
          Length = 695

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 115/302 (38%), Gaps = 49/302 (16%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------------- 217
           ++ + V+  L+I    QV ++  I EV        G Q                      
Sbjct: 340 AALENVIRDLDIR-RAQVQVEAIIVEVLEGDNVDFGIQWISENGGLVQYNTGNQVPIGSL 398

Query: 218 ---SITGSSSGPSKSFAADFGGKFVSEGGD---------FSVKGVLDRF-------SFET 258
              +        +     +  G+ V+              ++ G ++          +  
Sbjct: 399 AAAAYQARPREGTSVTTVNDNGQTVTTTNPEERGNLELLANLLGNVNGMMFGTIQNDWAA 458

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYG 313
           V+ A+ + T    LA P++  +  + ASF  G +    T S+          +V   + G
Sbjct: 459 VVQAVSQDTNSNILATPSIVTVDNEEASFLVGQEVPTITGSTLGNDNQSPFQTVDRQEIG 518

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L  TP +     + + I+ EVS      +   +     R+  TTV    G TIVL GL
Sbjct: 519 IKLKVTPQINEGNAVQMVIEQEVSSLSGATSVDVI--VNKRELKTTVMAEDGETIVLGGL 576

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDD 432
           + +D+Q+    IPLL  IP +G LF ++  + ++  + +   P +V+    + D+S+   
Sbjct: 577 IDEDVQESVSKIPLLGDIPFIGRLFSSTSTSTQKRNLMVFIRPTIVRNGSKLSDISKQKY 636

Query: 433 HY 434
           +Y
Sbjct: 637 NY 638


>gi|319944026|ref|ZP_08018306.1| type II and III secretion system protein [Lautropia mirabilis ATCC
           51599]
 gi|319742787|gb|EFV95194.1| type II and III secretion system protein [Lautropia mirabilis ATCC
           51599]
          Length = 837

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 105/271 (38%), Gaps = 30/271 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------SITGSSSGPSK 228
           + V++ L+     QV ++  I EV+ D + ++G Q                T  SSG S 
Sbjct: 407 RGVIDQLDSR-RAQVYIESLIVEVKADTVSEMGIQWQFGTSRPGQNSVVGGTNFSSGGSN 465

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDR--------FSFETVLHALERATAIRTLAEPTLTAI 280
             +       ++  G  +V  V +          +   +  ALE  T     A P L  +
Sbjct: 466 ILSVTQNPAALAAAGGLNVGVVRNGVSLFGQTFLNLGLLARALEAETNSNIRATPNLLTL 525

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
             + A    G    + T   +T   +       +   D G +L   P V   G + + I 
Sbjct: 526 DNEEARIIIGQNVPFVTGQYATTNNTLSSPFQTIERKDVGTMLRVRPQVSEGGTVKMEIA 585

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            E+S  V    +  + +   R  D+ V +  G  +VL GL++D ++     +PLL  IP 
Sbjct: 586 QEISAVVDTTQSAGIIT-NRRAIDSNVLVDDGQIVVLGGLIEDTVEGGISKVPLLGDIPG 644

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           LG LFR     R +T + I   P +++    
Sbjct: 645 LGRLFRYDNRKRVKTNLLIFLRPVVLRSADQ 675


>gi|326315788|ref|YP_004233460.1| type IV pilus secretin PilQ [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372624|gb|ADX44893.1| type IV pilus secretin PilQ [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 715

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 109/281 (38%), Gaps = 47/281 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF-------------------------- 215
           +++++ L++A   QV ++  I E R    + +G                           
Sbjct: 432 RQLLSTLDVA-VRQVMIEARIVEARDTFGRSLGVRLGGADLRANRGGDGGYSVGGNNRLA 490

Query: 216 -----QHSITGSSSGPSKSFAADFGGK-FVSEGGDFSVKGVLDRFS-----------FET 258
                 +++  S  G + +  +D  G  FV+     S       F+              
Sbjct: 491 IGTSYNNAVASSGGGGTVATGSDAAGSTFVNLPAALSSGASFGNFALTLFNSAANRFLTL 550

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            L A+E     + ++ P L       A    G ++ Y +V++  GAT++      + L  
Sbjct: 551 ELSAMEADGQGKVVSSPRLITADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEV 609

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           TP +   G I L +  +V++   G       +       T V + +GGT+V+ G+ + + 
Sbjct: 610 TPQITPEGNIILDL--DVNKDSKGETTTQGVAIDTNHVKTQVLVENGGTVVIGGIFRLEE 667

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              +  IPLL  +P++G LF+N      + E+ +  TP ++
Sbjct: 668 TNQENKIPLLGDVPVVGNLFKNRTRESTKREMLVFITPKVI 708


>gi|224826467|ref|ZP_03699569.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
 gi|224601568|gb|EEG07749.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
          Length = 659

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 88/427 (20%), Positives = 159/427 (37%), Gaps = 70/427 (16%)

Query: 53  GLNKVIILQVPVDVQ-DVLVSDPTKADVV------------VHSPRTMYLFGKNVGQANV 99
           G+N V    V  D++  + V + T  D +            V +  T+ ++  N  +   
Sbjct: 196 GINFVFDKDVRPDLKATIFVRNSTIEDAIQLLLVTNQLDRRVLNDNTIMVYPNNPAKQK- 254

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
               +    + N  +    +       +R  +   ++ V+   + VV+        D+  
Sbjct: 255 ---DYQELVIKNFYLA-NAEAKDTANLIRALLKTRDVFVDDKRNLVVMR-------DTPE 303

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           AV+++E  ++                       E +  L V + EV R  L+ +G     
Sbjct: 304 AVKVAERLIASQD------------------LAEPEAILDVEVVEVNRARLQSLGIDWPS 345

Query: 220 T------------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET--- 258
                                ++G             V+ G        L   +F     
Sbjct: 346 QVGYGLLTGGTSTQTGTVTNPTTGAVTPVVTPGVAATVASGVINLRNNPLGLTTFIANPA 405

Query: 259 -VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGV 314
            VLH   + T    LA P +   + + A    G +    T ++   A    SV+  D GV
Sbjct: 406 LVLHLQAQDTDANVLANPRIRVKNHEKAKIHIGDKVPVFTSTAVVNAGIAQSVSYLDVGV 465

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLAG 372
            L   P++     + + +  EVS  V  V+ G   +Y++  R ADTT+ L  G T VLAG
Sbjct: 466 KLEVKPSIGLDDDVTIDVGLEVSSIVKQVDFGTSTAYQIGSRAADTTLRLRDGETQVLAG 525

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L++D+ ++    IP L  +PI+G LF ++  +R ++EI +  TP +V  + + D    + 
Sbjct: 526 LIQDEDRRSITKIPGLGDLPIVGRLFSSNNDSRSKSEIVLLITPHIVHNLDLPDRQISEF 585

Query: 433 HYSVEDD 439
               E  
Sbjct: 586 RAGTESS 592


>gi|327538204|gb|EGF24886.1| general secretion pathway protein D (outD) [Rhodopirellula baltica
           WH47]
          Length = 822

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 79/397 (19%), Positives = 154/397 (38%), Gaps = 52/397 (13%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDV---LVSDPTKADVVVHSPRTMYLFGKNVG---QANV 99
           +G+   IG   ++++    ++  V   L++   +A V   S  +    G + G    A+ 
Sbjct: 231 RGRIQPIGRGAILVVDSKDNIDRVQQMLIAMLPEATVQSTSNPS---DGTSPGFQRPASP 287

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI-RVEMVSDTVVLHGMVRTIQDSQ 158
            +      +++ L        + +  +L   + +  I  V    + +++ G    ++ + 
Sbjct: 288 NVYDAMATEIIYLTPQFTE-ASEMRESLEGALGEGTIVSVYEAENRILIKGNRAQLELAS 346

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A +                         L++    QV +   I +V  + L+++G    
Sbjct: 347 QAFK------------------------QLDVP-RAQVRITALIYDVSLEELEELGVNWG 381

Query: 219 ITGSSSGPSKSFAADFGGKF----------VSEGGDFSVKGVLDRFSFETVLHALERATA 268
                    +S  AD  G                  F ++ + D F    +L AL+ +  
Sbjct: 382 RGFRLDTTDESALADLAGNVEKAVTFGTLGSGGASSFGIRTLTDTFDTSVLLRALDSSDE 441

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLS 324
            + LA+P++TAI  + AS     Q      S + G+      V   D G++L  TP + +
Sbjct: 442 AKLLADPSITAIDRREASIKIVQQIPIVAASPAEGSNVVFAQVEFKDAGIILKVTPRISN 501

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              I L++Q E S  V  +     P    R A+TTV + +G    L GL +  I +   G
Sbjct: 502 DNTIELQVQPEYSVKVGEIENN--PVIDSRTAETTVRVANGHMFTLGGLRQKRIIEGTSG 559

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +P L  +  +G LFR+      E+E+ +   P ++ P
Sbjct: 560 VPYLRDLKYVGKLFRSHSTEVRESELIVFLKPEIISP 596


>gi|91794695|ref|YP_564346.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
 gi|91716697|gb|ABE56623.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
          Length = 549

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 108/264 (40%), Gaps = 24/264 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L+  I EV      Q G Q          +        G  +S      + GV  
Sbjct: 276 QRQVILEAKIVEVTLSDGYQQGIQWDNVLGHIDSTNIEFGTAKGPNLSNSITSVLGGVTS 335

Query: 253 ----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GAT 305
                  F T++  L+    +  L+ P +TA + Q A    G    + T  SST   G  
Sbjct: 336 LSVKNTDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGNDEYFVTKVSSTTVTGTN 395

Query: 306 SVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMP-- 349
            +TT +        G+ L  TP + S G + L +   V +    +       ++ ++P  
Sbjct: 396 PITTPEVELTPFFSGIALDVTPQIDSEGNVLLHVHPSVIKVTEQIKDIQINGSSSELPLA 455

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R++DT +   SG  +++ GL+K D  ++   +PLL  IP+LG +F N     ++TE
Sbjct: 456 QSEIRESDTVIRAASGDVVIIGGLMKSDNVEMVSKVPLLGDIPLLGEIFTNRSKQMKKTE 515

Query: 410 IFIAATPFLVK-PVAMRDLSRPDD 432
           + I   P +V       +L R  D
Sbjct: 516 LIIMLKPTVVGVDTWREELKRSKD 539


>gi|157373684|ref|YP_001472284.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sediminis
           HAW-EB3]
 gi|157316058|gb|ABV35156.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sediminis
           HAW-EB3]
          Length = 567

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/275 (25%), Positives = 121/275 (44%), Gaps = 28/275 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           + QV L+  I EV      Q G Q  ++ G       +F      + + +    ++ GV 
Sbjct: 287 QRQVILEAKILEVTLSDGYQQGIQWDNVLGHVGSTDITFGTSENTEGLGDLITNAIGGVT 346

Query: 252 D----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GA 304
                  +F T+++ L+    +  L+ P +TA + Q A    G    + T  SST   G 
Sbjct: 347 SLSVKGSNFNTMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGT 406

Query: 305 TSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGD----M 348
           T VTT +        G+ L  TP +   G I L I   V        VI ++       +
Sbjct: 407 TPVTTPEVELTPFFSGIALDVTPQIDGEGNILLHIHPSVIDIKEQTKVIKISGSSLELPL 466

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
               +R++DT ++  +G  +V+ GL+K +  +++  +PLL  IP++G LF N   + ++T
Sbjct: 467 AQSDIRESDTVIKAKTGDVVVIGGLMKSENIEVESKVPLLGDIPLVGELFTNRSKSLKKT 526

Query: 409 EIFIAATPFLV-KPVAMRDLSRPD---DHYSVEDD 439
           E+ I   P +V      ++L +     D +  E+D
Sbjct: 527 ELVILLKPTVVGADTWRKELQKSKALLDRWYPEED 561


>gi|157376152|ref|YP_001474752.1| Type II secretory pathway component PulD-like protein [Shewanella
           sediminis HAW-EB3]
 gi|157318526|gb|ABV37624.1| Type II secretory pathway component PulD-like protein [Shewanella
           sediminis HAW-EB3]
          Length = 696

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 120/243 (49%), Gaps = 14/243 (5%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++  ++I    QV L VTIAEV+     + GF+ ++   SSG          G     GG
Sbjct: 440 LVQRMDIL-PKQVLLSVTIAEVKLTGEFKRGFEFAL---SSGNFSGSTKGGLGLDEIVGG 495

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            FS K   +    E +   +E  + +  L++P+L    G  A+   G +    + SSS+G
Sbjct: 496 TFSWKSGAN----EIIGKFVEENSQVNILSKPSLLVRDGTEANINVGDKIPVSSGSSSSG 551

Query: 304 -----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKAD 357
                  ++T  + G+ L  TPTV + G + + I  E+S  V+G V  G  P++  R   
Sbjct: 552 SGEVVTENITYRETGIKLTVTPTVNAQGVVIMEINQEISNQVVGPVGKGGNPTFFDRSIK 611

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V   +G TI+L GL+ DD     +G+P L  IP++GALF +   N  +TE+ I  TP 
Sbjct: 612 TEVVADTGQTILLGGLISDDTTNSNKGVPYLKSIPLIGALFESDSKNNTKTELVIMVTPK 671

Query: 418 LVK 420
           +V+
Sbjct: 672 IVE 674


>gi|170729053|ref|YP_001763079.1| general secretion pathway protein D [Shewanella woodyi ATCC 51908]
 gi|169814400|gb|ACA88984.1| general secretion pathway protein D [Shewanella woodyi ATCC 51908]
          Length = 714

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 108/284 (38%), Gaps = 47/284 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVSEGDDVGFGVQWATAAGGGTQFNNLGPTIGEIGAGV 396

Query: 236 --------GKFVSEGGDF------------------------SVKGVLDRFSFETVLHAL 263
                    +  S  GD                          +   +    F  ++ A+
Sbjct: 397 WNARDQKASQTCSGSGDNQTCTDNPDTPGDITLLAQALGKVNGMAWGVAMGDFGALIQAV 456

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLH 317
              T    LA P++T +  Q ASF  G +    T + ++         +V   + GV L 
Sbjct: 457 SSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGAQNSSNGNSNPFQTVERKEVGVKLK 516

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P +     + L I+ EVS   I    G   ++  R+  TTV   SG  +VL GL+ ++
Sbjct: 517 VVPQINEGSSVKLTIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLINEE 574

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +Q+  + +P L  IPI+G LF++S   +++  + +   P +++ 
Sbjct: 575 VQESVQKVPFLGDIPIIGHLFKSSSSGKKKKNLMVFIKPTIIRD 618


>gi|88858853|ref|ZP_01133494.1| general (Type II) secretion pathway (GSP) D protein
           [Pseudoalteromonas tunicata D2]
 gi|88819079|gb|EAR28893.1| general (Type II) secretion pathway (GSP) D protein
           [Pseudoalteromonas tunicata D2]
          Length = 685

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 105/243 (43%), Gaps = 18/243 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGKFVSEGGDFSVKGV 250
             Q+ L+V IAEV      + G + +    + G S   +F  D         G   +  +
Sbjct: 434 PKQIMLEVIIAEVSLTNEFKQGVEFAFKNGNYGTSTEKAFMGD---------GFGGLSYL 484

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------TVSSSTGA 304
           L     + +++ L+  + +  L+ P+L    G +A+   G             ++     
Sbjct: 485 LQGTQGKLIVNLLQTNSLVNILSRPSLVVRDGVNATINVGTDIPIVGETASDPINGDRQT 544

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELP 363
           T +     GV L  TPTV + G + + I+ ++S  V  G      PS   R  +T V   
Sbjct: 545 TKIEYRKTGVELAVTPTVNAQGIVLMEIKQKISNQVESGSTVSGNPSVFERTINTEVVAE 604

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SG TI+L GL+ ++       +P  S IPILG LFR    + ++TE+ I  TP +++  +
Sbjct: 605 SGQTIILGGLISENKSTKASRVPFFSGIPILGNLFRADTESGDKTELVILVTPRVIESSS 664

Query: 424 MRD 426
             D
Sbjct: 665 EWD 667


>gi|188990354|ref|YP_001902364.1| Fimbrial assembly protein pilQ precursor [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167732114|emb|CAP50306.1| Fimbrial assembly protein pilQ precursor [Xanthomonas campestris
           pv. campestris]
          Length = 626

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 107/266 (40%), Gaps = 28/266 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228
           +++++ ++    DQV ++  I        + +G +  + G+ +                 
Sbjct: 356 RELISHIDRP-VDQVLIEGRIVIATDTFARDLGAKFGLGGTHTYGDNVATIGSGATGGGV 414

Query: 229 ----SFAADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                   +      + G      +   +   F+ +  L AL++      ++ P +   +
Sbjct: 415 AAGRGLNVNLPTGAFTSGATAPSLAYTLLGSNFNLDLELSALQQEGRGEVISNPRIVTSN 474

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            +      G +  Y T++  T       +V   +  + L  TPT+ +  R+ L +  +  
Sbjct: 475 QREGVIKQGREIGYVTITGGTAGQAATPNVQFKEVLLELKVTPTITNDNRVFLNMNVKKD 534

Query: 338 EPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           E    +   N G +PS   R+ +T V +  G T+V+ G+ +   +     +P L  +P L
Sbjct: 535 EVDELIELPNYGTVPSINRREINTAVLVDDGQTVVIGGVYEFSDRSSVNKVPFLGDVPFL 594

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G LF++   ++++ E+ I  TP +++
Sbjct: 595 GNLFKSRGRSKDKAELLIFITPKVLR 620


>gi|153215373|ref|ZP_01949971.1| MSHA biogenesis protein MshL [Vibrio cholerae 1587]
 gi|124114744|gb|EAY33564.1| MSHA biogenesis protein MshL [Vibrio cholerae 1587]
          Length = 559

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 109/277 (39%), Gaps = 41/277 (14%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----D 233
           ++V   L I+ +    QV L+  I EV      Q G   S   SS+G S +  +     D
Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQD 320

Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             G  ++             GG  +V  V+   SF+ V+  +     +  L+ P +TA +
Sbjct: 321 SNGNPITSVLPGLDAIGNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 378

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331
            Q A    G    Y T  SS   T          ++T    G+ L  TP +   G + L 
Sbjct: 379 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 438

Query: 332 IQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +   V E                  +    +R++D+ +    G  +V+ GL+K +     
Sbjct: 439 VHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 498

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 499 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535


>gi|152988863|ref|YP_001351096.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa
           PA7]
 gi|150964021|gb|ABR86046.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa
           PA7]
          Length = 714

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 106/287 (36%), Gaps = 39/287 (13%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------- 218
           + Q      +++++ L+I    QV ++  I E      K +G +                
Sbjct: 428 QPQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNWNAYGKD 486

Query: 219 ---------------ITGSSSGPSKSFA------ADFGGKFVSEGGDFSVKGVLDRFSFE 257
                          I G+ S P+           D G K  + G    +  + D    +
Sbjct: 487 GNMGIKDEEGLNCGPIAGNCSFPTVGTNKSPSPFVDIGAKDATSG--IGIGFITDNIILD 544

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
             L A+E+      +++P +     ++A    G +  Y+  SSS   ++ +  +  + L 
Sbjct: 545 LQLSAMEKTGNGEIISQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLE 603

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP +    RI + ++     P        +P     + +  + +  G TIV+ G+  ++
Sbjct: 604 VTPQITPDNRIIVEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNE 663

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
             +  + +P L  +P LG LFR       + E+ +   P ++   A+
Sbjct: 664 QTKAVDKVPFLGDLPYLGRLFRRDTVVDRKNELLVFLAPRIMNNQAI 710


>gi|307293364|ref|ZP_07573210.1| general secretion pathway protein D [Sphingobium chlorophenolicum
           L-1]
 gi|306881430|gb|EFN12646.1| general secretion pathway protein D [Sphingobium chlorophenolicum
           L-1]
          Length = 716

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 25/360 (6%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
             G  ++         I      ++R + ++  +++   + V++  ++  I D+      
Sbjct: 312 SRGPAIVTRYEGANAIIVAANSDVQRMLGETVRQLDTRREQVLVEAIIVEISDAAAKKLG 371

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITG 221
            +  +  +     A + S    NLL IAG    +     T  EV            + + 
Sbjct: 372 VQFLIGSTKTGFAATNYSNAQPNLLTIAGAVAARELGDSTTVEVNNGTTTTTTRSRNSSD 431

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             S   ++      G     GG  +  G      F  +++A++  T    L+ P++  + 
Sbjct: 432 LESTLQEAAFNSLTGASGIIGGLGTQIG--RNGIFGAIINAVKSDTDSNILSTPSVMTLD 489

Query: 282 GQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            Q AS   G Q    T  +          +V   D G+ L   P + + G I L ++ EV
Sbjct: 490 NQKASILVGQQVPITTGEALSQNFDNQFRTVQRQDVGIKLEVKPQINTGGAIKLFLKQEV 549

Query: 337 SEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           S     V N+        R+ +TTV +  G  + L GLL D+ ++  E IPLLS IP +G
Sbjct: 550 SSVAGPVSNSNTDLIINKREIETTVTVDDGEILALGGLLDDNERKTIERIPLLSDIPGIG 609

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
            LF++   +R +T + +   P +++                ++DA+     R   I G +
Sbjct: 610 ELFKSRSKSRTKTNLMVFIRPTILR---------------SKEDAQKLTQQRYGYIRGMQ 654


>gi|88799076|ref|ZP_01114657.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
 gi|88778303|gb|EAR09497.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
          Length = 653

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 116/306 (37%), Gaps = 33/306 (10%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G           +   E                + +++ L+I   +QV ++  I EV  
Sbjct: 298 SGQNEPPSQPISVLADEEQNALIVRAEPSDMKELESIISQLDIP-REQVLIEAAIVEVTG 356

Query: 208 DILKQIGFQH--------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-- 251
           +    +G Q               S++   +G S    A   G+ +S+ G   +  +   
Sbjct: 357 NDTDTLGVQWATNPEVVQDGVPFLSVSSEVAGASVGNLAQSVGQGISQAGGSPLGALTSV 416

Query: 252 -------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                        +R  F   + ALE A+    L+ P++  +    A  T G    +KT 
Sbjct: 417 PAGTFMGLADPFGNRVDFGVAIQALESASNTNFLSTPSILTLDNSEAVITVGNSVPFKTG 476

Query: 299 SSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRK 355
            S       ++   D G  L   P +   G I L +   V      V+        + R+
Sbjct: 477 GSGDEDNPFTIERQDVGTTLTVIPHIQQNGTIRLEVDQIVESVDETVSYDASDVVTKKRQ 536

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V + SG TIVL GL++D + +L+  +P+L  IPI+G LF++    + +T + I   
Sbjct: 537 VTTQVLVNSGETIVLGGLIQDQVSELESRVPVLGYIPIIGHLFKSKSTLKTKTNLLIILK 596

Query: 416 PFLVKP 421
           P +++ 
Sbjct: 597 PSVIED 602


>gi|114328429|ref|YP_745586.1| general secretion pathway protein D [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316603|gb|ABI62663.1| general secretion pathway protein D [Granulibacter bethesdensis
           CGDNIH1]
          Length = 779

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 113/263 (42%), Gaps = 15/263 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFS 246
             QV +   IAEV  +   + G Q         +   +  + +  A  GG   +    FS
Sbjct: 488 PLQVRIDAIIAEVALNDTLRYGTQFFFREGGLNSAMQTAAATAATASTGGLLAAAIPGFS 547

Query: 247 VKGVL-DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVS 299
              +L    S +  +  L+  T ++ L+ P L  +  + A    G    Y       T+ 
Sbjct: 548 NGFLLTGSSSSQLAMTLLQSVTKVQVLSSPELMVLDNEPARLQVGALVPYLTAQSQATIG 607

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKAD 357
            S    +V+    GV+L+ TP V + G + L I  EVS+    +N   +  P+++ R   
Sbjct: 608 QSAIINAVSYQQTGVILNVTPRVNNSGLVTLDISQEVSDVDTSINTNGISSPAFQQRSVQ 667

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           + V +  G T+ LAGL++D+  +   G+P L  +P+LG++F     NR  TE+ I  TP 
Sbjct: 668 SRVVVQDGQTVGLAGLIRDNNSRANGGVPFLKDVPVLGSVFGQQNNNRSRTELLILVTPH 727

Query: 418 LVKPVAMRDLSRPDDHYSVEDDA 440
           ++           D   ++ D A
Sbjct: 728 VIHDQRDARALTEDLRQNLRDAA 750


>gi|56476683|ref|YP_158272.1| fimbrial type-IV assembly protein PilQ [Aromatoleum aromaticum
           EbN1]
 gi|56312726|emb|CAI07371.1| fimbrial type-IV assembly protein PilQ [Aromatoleum aromaticum
           EbN1]
          Length = 721

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 103/267 (38%), Gaps = 41/267 (15%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI----------------------------TGSSS 224
             QV ++  I E  +D  + +G +  +                            TG ++
Sbjct: 449 PRQVMIEARIVEANKDFARDLGVRLGVGGVGGRTVGFDANGRPIRRATVGGGLENTGFNA 508

Query: 225 GPS--------KSFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTL 272
           G +         +          + GG   +  VL   +        L ALE     R +
Sbjct: 509 GQTVAATDAQVATVPGGLNVNLPAPGGSGVLSAVLWNNTATRFLNLELSALESDGRGRIV 568

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           + P +   +   A    G +  Y   +SS GA S+      + L   P +   GR+ L +
Sbjct: 569 SSPRVLTANQVEAVIEQGTKIPYPEKTSS-GAASIKFEKAVLSLKVKPQITPEGRVQLFV 627

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                 P    +    P+   +   T V + +GGT+V+ G+ +++       IPLL ++P
Sbjct: 628 LVNKDRPDFARSVEGTPTVVTKNIQTEVLVENGGTVVIGGIYEEEETDSVTRIPLLGEVP 687

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
           ++GALFRN+  N + +E+ I  TP +V
Sbjct: 688 LVGALFRNTIKNSKRSELLIFITPRIV 714


>gi|121603667|ref|YP_980996.1| general secretion pathway protein D [Polaromonas naphthalenivorans
           CJ2]
 gi|120592636|gb|ABM36075.1| general secretion pathway protein D [Polaromonas naphthalenivorans
           CJ2]
          Length = 738

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 113/300 (37%), Gaps = 38/300 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V+  L+ A   QV ++  IAEV  D   + G Q    G   G   S     G  F S 
Sbjct: 398 RAVIEKLD-ARRAQVYVESLIAEVNMDKAAEFGIQW--QGPIGGKGDSLIGLLGTNFGSS 454

Query: 242 G------------------GDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTA 279
           G                  G     GV  R +       + + L+ + A   L+ P L  
Sbjct: 455 GKNIIQSAIGAASGTPLAPGTGLNLGVAARSNGVYFLGFLANFLQTSGAGNILSTPNLLT 514

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRI 328
           +  + A    G    + T   +   +           ++   D G+ L   P +   G +
Sbjct: 515 LDNEEAKIIIGQNVPFVTGQFTNTGSGGSNGSVNPFQTIERKDVGLTLRVKPQISENGTV 574

Query: 329 GLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            + I  EVS    G VN+        R  ++ V +  G  IV+ GLL+D+    +E +P 
Sbjct: 575 KMAIFQEVSSVQPGSVNSVTGLITNKRSIESHVLVEDGSIIVIGGLLQDEFAGNQEKVPG 634

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFN 446
           L  +P+ G LF++   +R++T + +   P +V+   A   LS     +   +  +    N
Sbjct: 635 LGDVPVFGNLFKSESRSRKKTNLMVFLRPVVVRDGAATSALSMDRYEFMRTNQQQTQPLN 694


>gi|229530247|ref|ZP_04419635.1| MSHA biogenesis protein MshL [Vibrio cholerae 12129(1)]
 gi|229332020|gb|EEN97508.1| MSHA biogenesis protein MshL [Vibrio cholerae 12129(1)]
          Length = 559

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 108/277 (38%), Gaps = 41/277 (14%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233
           ++V   L I+ +    QV L+  I EV      Q G   S   SS+G      S +   D
Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQD 320

Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             G  ++             GG  +V  V+   SF+ V+  +     +  L+ P +TA +
Sbjct: 321 SSGNPITSVLPGLDAIGNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 378

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331
            Q A    G    Y T  SS   T          ++T    G+ L  TP +   G + L 
Sbjct: 379 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 438

Query: 332 IQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +   V E                  +    +R++D+ +    G  +V+ GL+K +     
Sbjct: 439 VHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 498

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 499 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535


>gi|197104120|ref|YP_002129497.1| type II secretory pathway protein D [Phenylobacterium zucineum
           HLK1]
 gi|196477540|gb|ACG77068.1| type II secretory pathway protein D [Phenylobacterium zucineum
           HLK1]
          Length = 686

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 123/331 (37%), Gaps = 48/331 (14%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKK----VMNLLNIAGEDQVTLKVTIAEVR 206
             T   + +A      +   +     A+  +++    V+  L++    QV ++  + EV 
Sbjct: 318 AATPTAAGQARANIARYPGANAIVIAADPETQRMLAEVIRQLDVR-RRQVLVEAIVVEVS 376

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV---------------- 250
            +  K++G Q ++ G +       A  +     +                          
Sbjct: 377 DEAAKRLGVQFALAGINGSAIPFTATSYSNSAPNLPAVIGAVAAEKNLPDDDATKALLRD 436

Query: 251 --------------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                                D   F  V++A++  TA   L+ P++  +  Q A+   G
Sbjct: 437 AAVRSLLAANGALIGGGGQIGDDALFGLVINAVKSDTASNLLSTPSVMTLDNQPATILVG 496

Query: 291 GQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            +    T  S          ++   + GV L  TP + + G I L ++ EVS     ++A
Sbjct: 497 QEVPITTGESLGANNENPFRTIARQNVGVQLEVTPQINAGGTITLFLRQEVSAVAGPISA 556

Query: 346 G-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
                    R+ +TTV +  G  IVL GLL  D +   E  P+L  IP LGALFR +   
Sbjct: 557 NFTELVLNKREIETTVNVDDGEIIVLGGLLSQDERASVEKTPVLGDIPGLGALFRGTNKA 616

Query: 405 REETEIFIAATPFLVKPVA-MRDLSRPDDHY 434
           + +T + +   P +V   A  R ++ P   Y
Sbjct: 617 KTKTNLMVFIRPKIVGDAAGARAVTGPKYEY 647


>gi|193078561|gb|ABO13584.2| putative outer membrane protein (ComQ) [Acinetobacter baumannii
           ATCC 17978]
          Length = 721

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 39/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           +K+++LL++    QV ++  I        K++G +  I       + +            
Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 501

Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                    D G    +    F +  + D F  +  L AL+   
Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 560

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325
               ++ P +     Q+A   +G Q  Y++ ++S   ++   +  D  + L+ TP++   
Sbjct: 561 YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 620

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G+I +++             G++        +T V + +G T++L G+ +      +  +
Sbjct: 621 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKV 679

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 680 PFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720


>gi|126643202|ref|YP_001086186.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii
           ATCC 17978]
          Length = 695

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 39/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           +K+++LL++    QV ++  I        K++G +  I       + +            
Sbjct: 417 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 475

Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                    D G    +    F +  + D F  +  L AL+   
Sbjct: 476 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 534

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325
               ++ P +     Q+A   +G Q  Y++ ++S   ++   +  D  + L+ TP++   
Sbjct: 535 YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 594

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G+I +++             G++        +T V + +G T++L G+ +      +  +
Sbjct: 595 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKV 653

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 654 PFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 694


>gi|262163787|ref|ZP_06031527.1| S-protein secretion component D [Vibrio mimicus VM223]
 gi|262027767|gb|EEY46432.1| S-protein secretion component D [Vibrio mimicus VM223]
          Length = 713

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 95/233 (40%), Gaps = 20/233 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++ TIAE+  D  +Q G    IT  +        A F    +S  G F       
Sbjct: 468 PQQVLIQATIAEINIDDAQQFGVDFDITSGTITGGTKGLAGFDNGVLSLTGVFG------ 521

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATS 306
                    A  +    + L+ P + A++ ++A  T G Q    T   S G       T+
Sbjct: 522 --DVTMGFRAALKTGKAQVLSSPRIIAMNQEAARITVGDQIQVVTGEVSGGGDDSKATTT 579

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
               D GV L   PT+   G + L I  EVS    G +         R   T +   SG 
Sbjct: 580 YKYVDTGVTLDIIPTINQNGLVELEISQEVSNKGTGTD------INKRSLQTKLLADSGD 633

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           T+ + GL+K DI +    +PLL  IP LG LF+     ++  E+ +  TP+++
Sbjct: 634 TVFMGGLIKQDIGETDNRVPLLGDIPYLGNLFKYKSQTQKSVELVLLITPYVI 686


>gi|34499269|ref|NP_903484.1| type II secretion system protein [Chromobacterium violaceum ATCC
           12472]
 gi|34105120|gb|AAQ61476.1| probable type II secretion system protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 708

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 114/297 (38%), Gaps = 38/297 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--------------PS 227
           + V++LL+     QV ++  + EV      +IG Q +     +G              P 
Sbjct: 370 RNVIDLLDKR-RAQVYVEALVMEVTASRATKIGVQWAANVHGNGLIGNSLPSPSKPLVPG 428

Query: 228 KSFAADFGGKFVSE------GGDFSVK-------GVLDRFSFETVLHALERATAIRTLAE 274
            S A+D  G  +        GG  +         G     +   +  ALE+      +A 
Sbjct: 429 GSGASDTPGTALGSLVSSLTGGGLTAAIINTITVGGQQIPTLGLLAQALEQEAQGNLVAS 488

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTVLSPG 326
           P L  +  + A    G +    T +   G          +      G  L  TP +   G
Sbjct: 489 PQLVTMDNEKAKIVIGQEIGVPTATYPAGTNGTSNAPYSTYDRKTVGFGLEITPQISEGG 548

Query: 327 RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            I ++I     S     ++A   P++  R  DT V +  GG + L GL ++     ++ +
Sbjct: 549 TIRMKISQAADSIDQTTLSAAAGPTFNRRTLDTVVTVGDGGLVALGGLTQETTSNAEDKV 608

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAK 441
           PLL  IP++G LF+     R++T + I   P +++     R ++     Y +ED A+
Sbjct: 609 PLLGDIPVIGNLFKYQGKERKKTNLMIFIRPTIIRDEIGNRAVAGERYGYVMEDAAR 665


>gi|269964603|ref|ZP_06178842.1| General secretion pathway protein D [Vibrio alginolyticus 40B]
 gi|269830730|gb|EEZ84950.1| General secretion pathway protein D [Vibrio alginolyticus 40B]
          Length = 286

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 6/201 (2%)

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           + D+     +  G       +    +  ++ A+   +    L+ P++T +    ASF  G
Sbjct: 31  SGDYSTLASALSGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSITVMDNGEASFIVG 90

Query: 291 GQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            +    T S++         +V   + G+ L   P +     + L I+ EVS  V+G N 
Sbjct: 91  EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSN-VLGANG 149

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
                +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LF+++    
Sbjct: 150 AVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHLFKSTSTQT 209

Query: 406 EETEIFIAATPFLVKPVAMRD 426
           E+  + +   P +++     D
Sbjct: 210 EKRNLMVFIKPTIIRDGVTAD 230


>gi|91776764|ref|YP_546520.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91710751|gb|ABE50679.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 657

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/349 (21%), Positives = 140/349 (40%), Gaps = 46/349 (13%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS------QSGRNQY 176
           L         ++  +++   D +V+     T   ++    + +T L           N  
Sbjct: 246 LSENTALVFPNTAAKLKDYQD-LVIRNFYLTNAKAKDVSTMIKTMLKTKDVHTDERLNMI 304

Query: 177 ANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSK 228
               + +V+ +       N   + +V L++ + EV R+ L+++G  +  S+T S+     
Sbjct: 305 VIRDTPEVVRIAEKLVAANDLADPEVMLEIEVMEVSRERLQELGIDYPTSLTASAGLSID 364

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           +  ++  G ++              F+    L+  +    I  LA P +   +   A   
Sbjct: 365 AMRSNNSGTYL--------------FNSNPTLNFRKTTGDINILANPRIRVRNNDKAQVL 410

Query: 289 SGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
            G +    T  ++ G   + SV   D G+ L   P +     + ++I  EVS        
Sbjct: 411 VGDKVPVITTVATAGVGSSQSVQYLDVGLKLEAEPRITLDDFVNIKIALEVSSLGSSTTL 470

Query: 345 --AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
              G +     R A T + L  G T +LAGL+ D+ ++    +P L  IP+LG LF N  
Sbjct: 471 NGGGVVYQIGTRNASTLLRLKDGETQILAGLINDEERRNTSRLPGLGDIPLLGRLFSNQT 530

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
            NR++TEI +A TP +V      ++SRP      E +   ++    N I
Sbjct: 531 DNRKKTEIVLAITPHVV-----NNISRP------ESEVLEYWSGTENGI 568


>gi|186477543|ref|YP_001859013.1| type IV pilus secretin PilQ [Burkholderia phymatum STM815]
 gi|184194002|gb|ACC71967.1| type IV pilus secretin PilQ [Burkholderia phymatum STM815]
          Length = 523

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 114/313 (36%), Gaps = 16/313 (5%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
            A LE    R         E +   +   G  R +     A+    T L          +
Sbjct: 213 AAELEPLASRTFELHYAHAEELRKLLTASGNQRVLSKRGAAMADPRTNLLFVTDLAARLA 272

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------SGPS 227
              +++  L+     QV ++  I E  +   + +G + S+ G++             G  
Sbjct: 273 QIAELVASLDRPT-RQVLIEARIVEAEKGFSRNLGVKLSMIGTNEDGKATGLVGGKDGAI 331

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              +A     F +     ++            L ALE     + ++ P +       A  
Sbjct: 332 LDLSARPVSGFDAATMGLTLFAAQATRLVNIELSALEAEGRGQIVSSPRVVTADRMKAVV 391

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 392 EQGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVAKDSVGEQTAS 448

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+  GGT+ + G+ + D +     +PLL KIP+LG  FR+       
Sbjct: 449 GPAINTKHVQTRVEVEDGGTVSIGGIYETDGRDDVTRVPLLGKIPVLGVFFRHRAHRDLR 508

Query: 408 TEIFIAATPFLVK 420
           +E+ +  TP +V+
Sbjct: 509 SELVVFITPRVVQ 521


>gi|184159708|ref|YP_001848047.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
           ACICU]
 gi|239501963|ref|ZP_04661273.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
           AB900]
 gi|183211302|gb|ACC58700.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
           ACICU]
 gi|322509621|gb|ADX05075.1| HofQ [Acinetobacter baumannii 1656-2]
 gi|323519639|gb|ADX94020.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 721

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 39/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           +K+++LL++    QV ++  I        K++G +  I       + +            
Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 501

Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                    D G    +    F +  + D F  +  L AL+   
Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 560

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325
               ++ P +     Q+A   +G Q  Y++ ++S   ++   +  D  + L+ TP++   
Sbjct: 561 YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 620

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G+I +++             G++        +T V + +G T++L G+ +      +  +
Sbjct: 621 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKV 679

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 680 PFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720


>gi|330446773|ref|ZP_08310424.1| pilus (MSHA type) biogenesis protein MshL [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490964|dbj|GAA04921.1| pilus (MSHA type) biogenesis protein MshL [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 539

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 31/309 (10%)

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           +++E V   ++  G  R++  S +A  +S        R        K+ + +     + Q
Sbjct: 213 VQLEKVVSGMIGSGDGRSVMVSPQAGLISVRAFPNELRE------VKEFLGMSQKRLKRQ 266

Query: 196 VTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           V L+  I EV  D   Q G   S       G + G +       GG  +S+         
Sbjct: 267 VVLEAKIMEVTLDDSYQQGINWSYLTKSGNGITMGTAAIVDGLPGGNAISDLLGGQTNIT 326

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----- 305
           +   +F  V+  L     +  L+ P +TA + Q A    GG   + T  SS+  +     
Sbjct: 327 ISDGNFNAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNT 386

Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---------- 350
                S+T    G+ L  TP +   G + L +   V +        ++ +          
Sbjct: 387 VSPDVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVQNEEKKIEVGTAKPMVLPLAK 446

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++D+ +   +G  +V+ GL+K  I      +PLL  IP +G LFR     +++TE+
Sbjct: 447 STIRESDSIIHARTGDVVVIGGLMKSTINDQVSKVPLLGDIPGVGNLFRQINKVKKKTEL 506

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 507 VILLKPTVV 515


>gi|117620233|ref|YP_854918.1| msha biogenesis protein mshl [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561640|gb|ABK38588.1| msha biogenesis protein mshl [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 557

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 114/287 (39%), Gaps = 36/287 (12%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----------ITGSSSGPSK 228
           + ++ +N      + QV L+  I EV  +   + G   S           ITG  S    
Sbjct: 263 AVREFLNQSESHLKRQVVLEARILEVALNEGYEQGVDWSGLSASWDGNKGITGGGSLTPS 322

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           + A      F + GG    K  +   +F   ++ L+    + TL+ P +TA + Q A   
Sbjct: 323 TIANTPNQIFSALGGGAGFK--ISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIK 380

Query: 289 SGGQHLYKT------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            G    + T                T    +T    G+ L  TP +   G++ L I   V
Sbjct: 381 VGTDEYFVTNASTTTTTSGTSAPIVTPNVELTPFFSGIALDVTPQIDEEGKVLLHIHPSV 440

Query: 337 SEPVIGVNAGDM----PSY------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            +        D+    P         +R++DT V+  +G  IV+ GL+K D Q++   +P
Sbjct: 441 IDTEEQKKTIDVGTADPLILPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVP 500

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDD 432
           LL  IP +G  F N R + ++ E+ I   P +V K     +L R  +
Sbjct: 501 LLGDIPWVGEAFTNRRESTKKVELVILLKPTVVEKDTWQNELQRSSE 547


>gi|56708227|ref|YP_170123.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670698|ref|YP_667255.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224457344|ref|ZP_03665817.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370714|ref|ZP_04986719.1| type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254875049|ref|ZP_05247759.1| type IV pilus multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604719|emb|CAG45789.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110321031|emb|CAL09172.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568957|gb|EDN34611.1| type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254841048|gb|EET19484.1| type IV pilus multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282159452|gb|ADA78843.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 594

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 104/261 (39%), Gaps = 25/261 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236
           K+V+N ++I   DQV ++  I EV R    ++GF + +   S   +              
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390

Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                        FV      +   +      E  + ALE  +    +A P L   + Q 
Sbjct: 391 GPTPGPTPTPVDTFVGTTAKLAYT-IAGGVRLEMEVRALESESLAEEVASPHLVVANNQV 449

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340
           A    G    Y   ++S  A +V   +  + L  TP +   G I + I    +     P 
Sbjct: 450 AFIKDGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPG 508

Query: 341 IGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                GD+P   + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG LF 
Sbjct: 509 KTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFS 568

Query: 400 NSRFNREETEIFIAATPFLVK 420
            ++   +++E+ I  TP +++
Sbjct: 569 YTKITDQDSELLIFITPKIIE 589


>gi|307731211|ref|YP_003908435.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1003]
 gi|307585746|gb|ADN59144.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1003]
          Length = 613

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 96/242 (39%), Gaps = 15/242 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGG-----------KF 238
               QV ++  I E      + +G + S+ G+S+ G ++  +    G            F
Sbjct: 373 RPTRQVLIEARIVEGEHGFSRNLGVRLSMAGTSADGSTRGLSGGKDGLVYDLSARPIAGF 432

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++            L ALE     + ++ P +       A    G +  Y+  
Sbjct: 433 DAATAGLTLFAAGATRLLNIELSALEAEGRGQVVSSPRVVTADRMKAVVEQGTELPYQ-A 491

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P ++  GR+ L +           +AG  P+   +   T
Sbjct: 492 KVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGEQTDAG--PAINTKHVQT 549

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+  GGT+ + G+   D +     +P+L KIP+LGALFR+     + +E+ +  TP +
Sbjct: 550 RVEVEDGGTVSIGGIYATDGRDDVTRVPVLGKIPVLGALFRHRAHRDQRSELAVFITPRV 609

Query: 419 VK 420
           V+
Sbjct: 610 VQ 611


>gi|308271769|emb|CBX28377.1| hypothetical protein N47_G37010 [uncultured Desulfobacterium sp.]
          Length = 526

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 109/276 (39%), Gaps = 41/276 (14%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------------------- 220
           ++  ++     Q+ +K  I E  +D  + +G Q                           
Sbjct: 238 IIEEIDRPTP-QILIKANIVETTQDTARNLGIQWGGMYNPRLGNHDLWVSPGGSTNSTTP 296

Query: 221 ------------GSSSGPSKSFAADFGGKF--VSEGGDFSVKGVLDRFSFETVLHALERA 266
                       GS+S  S+ F  +F       + G    + G +     E  L AL+  
Sbjct: 297 TNPISGNYTPSYGSTSLSSQGFGINFPASMSDAASGTLGLMFGTIGGNILEMQLSALQNN 356

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVL 323
             +  L+ P++T +  Q+A   +G +  Y T  + T  +   SV   D  + L   P V+
Sbjct: 357 GKLNILSSPSITTLDNQTAYTENGERIPYVTEETGTTGSITKSVKFEDVVLRLEIKPHVI 416

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
               + + +  + +E     N    P    ++  TT+ + +G TIV++GL K   Q  + 
Sbjct: 417 DSKNLKMEVLVKKNEVDNSRNVLGNPYIIKKETKTTLIVKNGETIVISGLTKQKKQDSEN 476

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +P+L  +P+ G +F+ +  ++   E+ I  TP ++
Sbjct: 477 SVPVLRDMPLFGRMFKGTGKSKSMEEVLIFITPTIL 512


>gi|260556918|ref|ZP_05829135.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
           19606]
 gi|260409524|gb|EEX02825.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
           19606]
          Length = 721

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 39/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           +K+++LL++    QV ++  I        K++G +  I       + +            
Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 501

Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                    D G    +    F +  + D F  +  L AL+   
Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 560

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325
               ++ P +     Q+A   +G Q  Y++ ++S   ++   +  D  + L+ TP++   
Sbjct: 561 YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 620

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G+I +++             G++        +T V + +G T++L G+ +      +  +
Sbjct: 621 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKV 679

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 680 PFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720


>gi|254469140|ref|ZP_05082545.1| general (type II) secretion pathway (GSP) D protein, putative
           [Pseudovibrio sp. JE062]
 gi|211960975|gb|EEA96170.1| general (type II) secretion pathway (GSP) D protein, putative
           [Pseudovibrio sp. JE062]
          Length = 749

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 16/250 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVS 240
           + V+  L++    QV ++ TIAEV  +     G Q  +  G+ +G   + A        +
Sbjct: 486 RDVVQALDLPLS-QVVIEATIAEVNINDNLSYGVQWYLAKGNFAGGIGAVADGASRPTKA 544

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KT 297
            GG  S    L+    + VL AL+  T ++ ++ P LT + G+ A    G Q  +     
Sbjct: 545 AGGALS----LNTVGVDVVLKALQNITKVKVISSPYLTVLDGRKARLVIGDQVPFASRSQ 600

Query: 298 VSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSY 351
            SS+ G  +VT      D G+VL   P + S   + L+IQ EVS  V          P+ 
Sbjct: 601 SSSNDGNVTVTNEVDVKDTGIVLQVEPNIRSNNSVLLQIQQEVSNVVQNKTEEGSLTPTI 660

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEI 410
             R  ++ + + SG TI+L GL+++  +  + G+P+L KIP+ G LF+ N+  +   TE+
Sbjct: 661 ATRTINSDIVVESGRTILLGGLIQERKENGESGVPILRKIPVFGELFKENTTNDTRRTEL 720

Query: 411 FIAATPFLVK 420
            +  TP +V+
Sbjct: 721 LVMITPRVVR 730


>gi|169794485|ref|YP_001712278.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii
           AYE]
 gi|213158943|ref|YP_002320941.1| fimbrial assembly protein PilQ [Acinetobacter baumannii AB0057]
 gi|215482074|ref|YP_002324256.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB307-0294]
 gi|301345422|ref|ZP_07226163.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB056]
 gi|301510068|ref|ZP_07235305.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB058]
 gi|301595996|ref|ZP_07241004.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB059]
 gi|169147412|emb|CAM85273.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii
           AYE]
 gi|213058103|gb|ACJ43005.1| fimbrial assembly protein PilQ [Acinetobacter baumannii AB0057]
 gi|213988167|gb|ACJ58466.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB307-0294]
          Length = 721

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 39/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           +K+++LL++    QV ++  I        K++G +  I       + +            
Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 501

Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                    D G    +    F +  + D F  +  L AL+   
Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 560

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325
               ++ P +     Q+A   +G Q  Y++ ++S   ++   +  D  + L+ TP++   
Sbjct: 561 YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 620

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G+I +++             G++        +T V + +G T++L G+ +      +  +
Sbjct: 621 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKV 679

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 680 PFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720


>gi|325123720|gb|ADY83243.1| type IV pilus assembly protein PilQ [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 721

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 104/281 (37%), Gaps = 39/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           +K+++LL++    QV ++  I        K++G +  I       + +            
Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 501

Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                    D G    +    F +  + D F  +  L AL+   
Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSD-FMLDLELSALQADG 560

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSP 325
               ++ P +     Q A   +G Q  Y+T ++S      S +  D  + L  TP++   
Sbjct: 561 YGEVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPD 620

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G+I +++             G++         T V + +G T++L G+ +      +  +
Sbjct: 621 GKIQMKLDISKDSVSGAAPNGEL-ILNKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKV 679

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P    +P +G LFR  + + ++ E+ I  TP +V    +R+
Sbjct: 680 PFFGDLPGIGRLFRKDQKSDDKQELLIFVTPRIVNDTLVRN 720


>gi|313669028|ref|YP_004049312.1| pilus secretin [Neisseria lactamica ST-640]
 gi|313006490|emb|CBN87953.1| pilus secretin [Neisseria lactamica 020-06]
          Length = 726

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 107/262 (40%), Gaps = 24/262 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFA 231
           +K+++ L++    QV ++  I E      + +G +   TG             G +  F 
Sbjct: 458 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFE 516

Query: 232 ADFGGK----------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
              GGK            +     S+   +   +    L A E  +  +TLA P +   +
Sbjct: 517 GGEGGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQN 576

Query: 282 GQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            + A   SG +  ++  + S  + +T+ T     + L  TP +   G+I + ++     P
Sbjct: 577 RKEAKIESGTEIPFQDTSSSGGSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTP 636

Query: 340 VI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           V   V        + +  +T   + +GGT+++ G+ +++       IPLL  IP++G LF
Sbjct: 637 VDCTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKIPLLGDIPVIGNLF 696

Query: 399 RNSRFNREETEIFIAATPFLVK 420
           +    +    E+ I  TP ++ 
Sbjct: 697 KTRGKSTNRRELLIFITPRIMD 718


>gi|152990751|ref|YP_001356473.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
 gi|151422612|dbj|BAF70116.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
          Length = 507

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 121/296 (40%), Gaps = 36/296 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----ITGSSSGPSKSFAADFGGK 237
           +K +  +     ++V + V+I  V  +     G   S    +     G   +F      K
Sbjct: 211 EKYIATIQNRLHNEVMIDVSILAVILNDQYTNGIDWSRFSLLVNGDYGADNTFTPGTNTK 270

Query: 238 FVS--------EGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQS 284
            +S           +F+V+  +  +     +   +++ LE+   + TL+ P L  ++ Q 
Sbjct: 271 LLSYTREGSGTSTSNFNVQRTIGSYFDASVNLAGIINFLEKNGQVITLSNPKLMTLNNQP 330

Query: 285 ASFTSGGQHLYKTVSS-------STGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTE 335
           A  + G    Y   +S         G  S T      G++L+ TP +   G I LRI   
Sbjct: 331 AIISIGDTINYNVPTSIVISQNGGLGTQSFTPSSVFIGILLNITPEITENGEIILRINPS 390

Query: 336 VSEP------VIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           +SEP          N   +    P    +K  + V++  G T++L GL+ +       G+
Sbjct: 391 ISEPRDPKQLDQTTNENGIRQIAPDISEKKISSVVKVKDGSTLILGGLISNIKNFTINGV 450

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           P+L  IP+LG LFR+   N +  E+     P ++K  +  + S  D  YS+ D AK
Sbjct: 451 PVLRDIPVLGGLFRSKARNNKRFELVFIIKPRIIKESSTDNYSLKDLGYSIVDHAK 506


>gi|83648789|ref|YP_437224.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC
           2396]
 gi|83636832|gb|ABC32799.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC
           2396]
          Length = 561

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 117/277 (42%), Gaps = 29/277 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFA 231
           ++ ++ ++   +  + QV L+V I EV  +   + G   S          +S  P+KS  
Sbjct: 265 TAVEEYLDKAQLVMQRQVILEVKILEVVLNKGFEQGVNWSYFDEFTSKVDASGDPTKSLT 324

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                + V+  G   V     R + F T+L  L     ++ L+ P ++ I+ Q A    G
Sbjct: 325 LGQTSRSVTNPGLEGVFSAALRINDFTTLLQLLGEQGTVQVLSSPRISTINNQKAVIKVG 384

Query: 291 GQHLYKTVSSSTGATS------------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
               + T   +  AT+            +T    G+ L  TP +   G + L +   VS+
Sbjct: 385 DDEFFVTGIETNDATTTSGTSNLISEVEITPFFSGIALDVTPQIGENGDVTLHVHPTVSD 444

Query: 339 P-------VIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                    +G N   +P     VR+ D+ ++  +G  +V+ GL+++  ++ +  +PLL 
Sbjct: 445 VEDQTKTISLGANDLVLPLAFSSVRETDSVIKARNGQVVVIGGLIRNLTEKTQAKVPLLG 504

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            IP+LG  FR  R    ++E+ I   P +    + R 
Sbjct: 505 DIPLLGHAFRQKRDTELKSELVILIRPIIADSESYRQ 541


>gi|115350365|ref|YP_772204.1| type IV pilus secretin PilQ [Burkholderia ambifaria AMMD]
 gi|115280353|gb|ABI85870.1| type IV pilus secretin PilQ [Burkholderia ambifaria AMMD]
          Length = 553

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 102/250 (40%), Gaps = 17/250 (6%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
            +++ ++     QV ++  I E  +   + +G + ++      P+   AA          
Sbjct: 275 GLIDAIDRP-SRQVRIEARIVEGEQGFSRNLGARIALRAQGRAPTADGAASATDTRNALD 333

Query: 236 ------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                 G F +    F++         +  L ALE     + ++ P +       A    
Sbjct: 334 LAARPLGGFEAATAGFTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQ 393

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
           G +  Y+      G + V      + L   P +   GR+ L +  +V++  IG      P
Sbjct: 394 GSELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGP 450

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   +   T VE+ +GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E
Sbjct: 451 AIHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSE 510

Query: 410 IFIAATPFLV 419
           + +  TP +V
Sbjct: 511 LVVFITPTVV 520


>gi|307578579|gb|ADN62548.1| type IV pilus secretin PilQ [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 581

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 105/258 (40%), Gaps = 28/258 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------TGSSSGPSKSFAA 232
              DQV ++  I        + +G +  +                   GSS+  ++    
Sbjct: 315 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTAGSSTSATRGLNV 374

Query: 233 DFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           D GG   +        +   +  +F+ +  L AL++ +    ++ P +   + +      
Sbjct: 375 DLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIKQ 434

Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIG 342
           G +  Y T++          +V   +  + L  TPT+ +  R+ L +     E+ + +  
Sbjct: 435 GKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITI 494

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            N G +P+   R+ +T V +  G T+V+ G+ +   +     +P L  +P LG LF+   
Sbjct: 495 ANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRG 554

Query: 403 FNREETEIFIAATPFLVK 420
            ++++ E+ I  TP +++
Sbjct: 555 KDKQKAELLIFVTPKVLR 572


>gi|332184221|gb|AEE26475.1| Type IV pilus biogenesis protein PilQ [Francisella cf. novicida
           3523]
          Length = 596

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 104/263 (39%), Gaps = 27/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236
           K+V+N ++I   DQV ++  I EV R    ++GF + +   S   +              
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390

Query: 237 --------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                          FV      +   +      +  + ALE  +    +A P L   + 
Sbjct: 391 GPTPGPTPTPTPVDTFVGTTAKLAYT-IAGGVQLQMEIRALESESLAEEVASPHLVVANN 449

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
           Q A    G    Y   ++S  A +V   +  + L  TP +   G I + I    +     
Sbjct: 450 QVAFIKDGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGAS 508

Query: 339 PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           P      GD+P   + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG L
Sbjct: 509 PGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYL 568

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F  ++   +++E+ I  TP +++
Sbjct: 569 FSYTKITDQDSELLIFITPKIIQ 591


>gi|206558684|ref|YP_002229444.1| putative type IV pilus secretin [Burkholderia cenocepacia J2315]
 gi|198034721|emb|CAR50588.1| putative type IV pilus secretin [Burkholderia cenocepacia J2315]
          Length = 541

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 17/252 (6%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADF----- 234
            +++ ++     QV ++  I E  +   + +G + ++      PS    SF AD      
Sbjct: 263 GLIDAIDRP-SRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPSAEGTSFTADARNALD 321

Query: 235 -----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                 G F +    F++         +  L ALE     + ++ P +       A    
Sbjct: 322 LAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQ 381

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
           G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G      P
Sbjct: 382 GSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGP 438

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   +   T VE+ +GGT+ + G+ +   +     +PLL KIPILGALFR+     +  E
Sbjct: 439 AIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPILGALFRHRAQRDQRNE 498

Query: 410 IFIAATPFLVKP 421
           + +  TP +V P
Sbjct: 499 LVVFITPTVVDP 510


>gi|90416876|ref|ZP_01224805.1| putative general secretion pathway protein [marine gamma
           proteobacterium HTCC2207]
 gi|90331223|gb|EAS46467.1| putative general secretion pathway protein [marine gamma
           proteobacterium HTCC2207]
          Length = 629

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 120/302 (39%), Gaps = 30/302 (9%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAE 204
           L G     + ++ A ++    L+ +       +  +++ N++        QV ++  IAE
Sbjct: 286 LAGEAVADKKAKAAYQIQIDELNNALVVAAPTAVIREIKNVVAQLDRSRPQVLIEAVIAE 345

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----------------FSVK 248
           +  D  +++  Q + +  + G   +            G                   +V 
Sbjct: 346 LSEDQAQELSSQLAYSSKNRGGYLTNFDGLLATLTGLGISGVEPTAAELGLLPKKVMAVA 405

Query: 249 GVLD---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------ 299
           G  D         ++ AL+   + + L+ P++  +  + A+ + G +  ++T S      
Sbjct: 406 GDFDSETGKGIGLLIQALKTDGSTKILSTPSVVTLDNEEATLSVGEEVPFQTGSFTSSNN 465

Query: 300 -SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
            S+   T++   + GV L   P +     + L I+ E S+   GV    + +       T
Sbjct: 466 GSNNPFTTINREEVGVKLKVKPQISKGDSVRLEIEQESSKVKSGVPG--LQTTSKSTMQT 523

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V +  G  ++L GL++D        +PLL  IP+LG LFR++     ++ + +   P +
Sbjct: 524 NVLIQDGELLILGGLIEDQTGGSATKVPLLGDIPLLGRLFRSTSKADSQSVLMMFIRPTI 583

Query: 419 VK 420
           ++
Sbjct: 584 IR 585


>gi|120609694|ref|YP_969372.1| type IV pilus secretin PilQ [Acidovorax citrulli AAC00-1]
 gi|120588158|gb|ABM31598.1| type IV pilus secretin PilQ [Acidovorax citrulli AAC00-1]
          Length = 715

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 110/281 (39%), Gaps = 47/281 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF-------------------------- 215
           +++++ L++A   QV ++  I E R    + +G                           
Sbjct: 432 RQLLSTLDVA-VRQVMIEARIVEARDTFGRSLGVRLGGADLRANRGGDGGYSVGGNNRLA 490

Query: 216 -----QHSITGSSSGPSKSFAADFGGK-FVSEGGDFSVKGVLDRFS-----------FET 258
                 +++  S +G + +  +D  G  FV+     S       F+              
Sbjct: 491 IGTSYNNAVASSGAGGTVATGSDAAGSTFVNLPAALSSGASFGNFALTLFNSAANRFLTL 550

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            L A+E     + ++ P L       A    G ++ Y +V++  GAT++      + L  
Sbjct: 551 ELSAMEADGQGKVVSSPRLITADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEV 609

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           TP +   G I L +  +V++   G       +       T V + +GGT+V+ G+ + + 
Sbjct: 610 TPQITPEGNIILDL--DVNKDSKGETTTQGVAIDTNHVKTQVLVENGGTVVIGGIFRLEE 667

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              +  IPLL  +P++G LF+N      + E+ +  TP ++
Sbjct: 668 TNQENKIPLLGDVPVVGNLFKNRTRESTKREMLVFITPKVI 708


>gi|323496092|ref|ZP_08101152.1| MSHA biogenesis protein MshL [Vibrio sinaloensis DSM 21326]
 gi|323318836|gb|EGA71787.1| MSHA biogenesis protein MshL [Vibrio sinaloensis DSM 21326]
          Length = 544

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 123/331 (37%), Gaps = 41/331 (12%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +++     ++  G  +++  + +A  ++        R        ++ + +     + QV
Sbjct: 210 QLQAAVAQLIGSGSGQSVVVTPQASVITVRAYPDEVRE------VREFLGVSQQRMQRQV 263

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------------GGKFVSE 241
            L+  I EV      Q G   S   SS+G + S                    G   +  
Sbjct: 264 ILEAKILEVTLSDGYQQGINWSKAFSSNGTNYSIGQGSIVKDGNGDILPAVLPGLDAIGT 323

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                   V+   SF+ VL  +     +  L+ P +TA + Q A    G    Y T  SS
Sbjct: 324 LLGGQTNLVISSGSFDAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSS 383

Query: 302 ----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-------EVSEPVIGVN 344
                     +    +T    G+ L  TP +   G + L +         +V E   G  
Sbjct: 384 VVGSGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVDEQVKEIGFGDT 443

Query: 345 AGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
              +P  R  +R++D+ +    G  +V+ GL+K +       +P L  +P LG LFRN+ 
Sbjct: 444 RITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTIDQVSKVPFLGDVPALGHLFRNTT 503

Query: 403 FNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
              ++TE+ I   P +V      ++L R  D
Sbjct: 504 KLTQKTELVILLKPTVVGVNTWQKELERSRD 534


>gi|224372077|ref|YP_002606449.1| putative GspD [Nautilia profundicola AmH]
 gi|223589087|gb|ACM92823.1| putative GspD [Nautilia profundicola AmH]
          Length = 580

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 124/270 (45%), Gaps = 8/270 (2%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGKFV 239
           K ++  L+I  + QV +K  I E+      QIG +  +   S   S   + +A+ GG  +
Sbjct: 303 KTIIKALDIP-KMQVYVKARILEISNLKASQIGNKLGLYAGSGTGSGLYTLSANMGGPAI 361

Query: 240 S---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +        S+  +    +    +  LE   A + L+EP++  I+   ++   G     K
Sbjct: 362 AFDVTSLGLSIPTIRQGLALGATIDLLETFGAAKKLSEPSILCINNTPSTIYVGKTISVK 421

Query: 297 TVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           T  +++ +TSV+    D G+ L   P + S  ++ L ++  V + + G     +P+   R
Sbjct: 422 TGQTTSTSTSVSYSRQDIGLTLEIKPRIDSDNKVSLNVKAVVEDILPGSPDLTLPTTSKR 481

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              TT  + +G +I++ GL++++     + +P    IPI+GALFR+   N ++T + I  
Sbjct: 482 DIKTTTIVSNGQSIIIGGLVRNNKDITIKKVPFFGDIPIIGALFRHKEVNEDKTTLVIVL 541

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           TP++VK     D  R       E + K   
Sbjct: 542 TPYIVKQSTDLDKLRLTLGKLNELERKFAL 571


>gi|114561293|ref|YP_748806.1| general secretion pathway protein D [Shewanella frigidimarina NCIMB
           400]
 gi|114332586|gb|ABI69968.1| general secretion pathway protein D [Shewanella frigidimarina NCIMB
           400]
          Length = 710

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 111/284 (39%), Gaps = 47/284 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------------- 219
           + V+N L+I    QV ++  I E+        G Q                         
Sbjct: 339 ESVINQLDIR-RAQVLVEAIIVEIAEGDNVGFGVQWGSEAGGLTQFNNIGPTIGEVGAGV 397

Query: 220 --TGSSSGPSKSFAADFGGKFVSE---------------GGDFSVKGVLDRFSFETVLHA 262
                + G + +     GG   +                G    +   +   +F  ++ A
Sbjct: 398 WSARETDGTTVTVGNSDGGSTTTTNPTSDGDYTLIAQALGKVNGMAWGVTTGNFAALIQA 457

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317
           +   T    LA P++T +  Q ASF  G +    T S+S+        +V   + GV L 
Sbjct: 458 VSSDTNSNVLATPSITTLDNQEASFIVGDEVPIITGSTSSSNNDNPFQTVERKEVGVKLK 517

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +VL GL+ ++
Sbjct: 518 VVPQINEGSSVKLTIEQEVSG--VNGNTGVDISFSTRRLTTTVMADSGQIVVLGGLINEE 575

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +Q+  + +P+L  IP +G LF++S   + +  + I   P +++ 
Sbjct: 576 VQESIQKVPILGDIPFIGHLFKSSSSKKTKKNLMIFIKPTIIRD 619


>gi|323527558|ref|YP_004229711.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1001]
 gi|323384560|gb|ADX56651.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1001]
          Length = 576

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 15/242 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGG-----------KF 238
               QV ++  I E      + +G + S+ G+++ G ++  +    G            F
Sbjct: 336 RPTRQVLIEARIVEGEHGFSRNLGVRLSMAGTAADGTTRGLSGGKDGLVYDLSARPIAGF 395

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++            L ALE       ++ P +       A    G +  Y+  
Sbjct: 396 DAATAGLTLFAAGATRLLNVELSALEAEGRGEVVSSPRVVTADRMKAVVEQGTELPYQ-A 454

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P ++  GR+ L +           +AG  P+   +   T
Sbjct: 455 KVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGEQTDAG--PAINTKHVQT 512

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+  GGT+ + G+   D +     +P+L KIP+LGALFR+     + +E+ +  TP +
Sbjct: 513 RVEVEDGGTVSIGGIYATDGRDDVTRVPVLGKIPVLGALFRHRAHRDQRSELAVFITPRV 572

Query: 419 VK 420
           V+
Sbjct: 573 VQ 574


>gi|226226499|ref|YP_002760605.1| putative general secretion pathway protein D precursor
           [Gemmatimonas aurantiaca T-27]
 gi|226089690|dbj|BAH38135.1| putative general secretion pathway protein D precursor
           [Gemmatimonas aurantiaca T-27]
          Length = 621

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 109/265 (41%), Gaps = 8/265 (3%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ +  L+I    QV  +VTIAE+      + G   +           F         S 
Sbjct: 343 RETIEALDIR-PAQVLFEVTIAEIALGRGFEFGIDWAAVNRGGDVQAQFGNPEIPDTGST 401

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                V   LD      +L  +   + ++ LA P + A + + AS   G +  + + +  
Sbjct: 402 SALLRVVR-LDGTGVRALLRTIASKSEVQVLATPEIMAANNREASILVGSKVPFISSTRL 460

Query: 302 TGATS----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRK 355
               S    V   D G  L   PT+   G I +++  EVS       A  +  P    R+
Sbjct: 461 GNDISIDRAVQYQDVGTKLAIIPTINDEGYISVQLLQEVSSLTPQTVAAALSAPVISTRE 520

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A T   L  G T V+AGL+ +      +G+P+L  IP LGALF+     R+ TE+ I  T
Sbjct: 521 ASTRAVLRDGQTAVIAGLIGETRTTQDQGLPILKDIPWLGALFKRQSSTRQRTELAIFVT 580

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDA 440
           P++V+  A  D  R      +ED +
Sbjct: 581 PYVVRSDADADGIRERIRKRMEDRS 605


>gi|32477970|ref|NP_870964.1| general secretion pathway protein D (outD) [Rhodopirellula baltica
           SH 1]
 gi|32448527|emb|CAD78042.1| general secretion pathway protein D (outD) [Rhodopirellula baltica
           SH 1]
          Length = 822

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 113/276 (40%), Gaps = 19/276 (6%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
             E     L +  R Q   +S  +    L++    QV +   I +V  + L+++G     
Sbjct: 326 VYEAENRILIKGNRAQLELAS--QAFKQLDVP-RAQVRITALIYDVSLEELEELGVNWGR 382

Query: 220 TGSSSGPSKSFAADFGGKF----------VSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                   +S  AD  G                  F ++ + D F    +L AL+ +   
Sbjct: 383 GFRLDTTDESALADLAGNVEKAVTFGTLGSGGASSFGIRTLTDTFDTSVLLRALDSSDEA 442

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSP 325
           + LA+P++TAI  + AS     Q      S + G+      V   D G++L  TP + + 
Sbjct: 443 KLLADPSITAIDRREASIKIVQQIPIVAASPAEGSNVVFAQVEFKDAGIILKVTPRISND 502

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
             I L++Q E S  V  +     P    R A+TTV + +G    L GL +  I +   G+
Sbjct: 503 NTIELQVQPEYSVKVGEIENN--PVIDSRTAETTVRVANGHMFTLGGLRQKRIIEGTSGV 560

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           P L  +  +G LFR+      E+E+ +   P ++ P
Sbjct: 561 PYLRDLKYVGKLFRSHSTEVRESELIVFLKPEIISP 596


>gi|118497727|ref|YP_898777.1| Type IV pili secretin component [Francisella tularensis subsp.
           novicida U112]
 gi|194323699|ref|ZP_03057475.1| type IV pilus secretin PilQ family protein, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|82453010|gb|ABB76143.1| PilQ [Francisella novicida]
 gi|118423633|gb|ABK90023.1| Type IV pili secretin component [Francisella novicida U112]
 gi|194322063|gb|EDX19545.1| type IV pilus secretin PilQ family protein, putative [Francisella
           tularensis subsp. novicida FTE]
          Length = 594

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 103/261 (39%), Gaps = 25/261 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236
           K+V+N ++I   DQV ++  I EV R    ++GF + +   S   +              
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390

Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                        FV          +      +  + ALE  +    +A P L   + Q 
Sbjct: 391 GPTPGPTPTPVDTFVGTTAKLMYT-IAGGVQLQMEIRALESESLAEEVASPHLVVANNQV 449

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340
           A    G    Y   ++S  A +V   +  + L  TP +   G I + I    +     P 
Sbjct: 450 AFIKDGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPG 508

Query: 341 IGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                GD+P   + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG LF 
Sbjct: 509 KTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFS 568

Query: 400 NSRFNREETEIFIAATPFLVK 420
            ++   +++E+ I  TP +++
Sbjct: 569 YTKITDQDSELLIFITPKIIE 589


>gi|332139655|ref|YP_004425393.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshL (pilus type IV) [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549677|gb|AEA96395.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshL (pilus type IV) [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 582

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 114/313 (36%), Gaps = 44/313 (14%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +  + ++ V   +  L          +  K  +N    + + QV L+  I EV  +   Q
Sbjct: 250 SPTEGRQVVVSPQAGLVTIRALPSEIAVVKDFLNQSQESLQRQVVLEARIIEVTLNDGYQ 309

Query: 213 IGFQH-----------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV----------- 250
            G +            +   S    + +FAA+            +  G            
Sbjct: 310 QGVRWDRIASGLTGSVNFGFSGGALASNFAANTAAGIDPAINAVNAIGNTISTDIGGVST 369

Query: 251 --LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
             + R  F+ V++ L+    ++ L+ P +T  + Q A    G    + T  S++   S T
Sbjct: 370 LRISRGDFDGVINMLQTQGDVQMLSNPRVTVTNNQKAVIKVGQDEYFVTDVSTSEDQSTT 429

Query: 309 THD-----------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348
           + +            G+ L  TP +   G + L +   V+E         +         
Sbjct: 430 STENENDIELTPFFSGIALDVTPQIDRSGSVILHVHPSVTETAEQTKVIQVGDQQILLPL 489

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
               +R++DT +    G  +V+ GL++    + +   PLL  IP +G  F+N    + + 
Sbjct: 490 AQSNIRESDTVIRARDGEIVVIGGLMETVTSEQESKTPLLGDIPFIGNAFKNKAKTQSKR 549

Query: 409 EIFIAATPFLVKP 421
           E+ I   P +V+P
Sbjct: 550 ELVILIRPSVVQP 562


>gi|312882785|ref|ZP_07742519.1| type IV pilus assembly protein PilQ [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369569|gb|EFP97087.1| type IV pilus assembly protein PilQ [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 409

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 103/250 (41%), Gaps = 12/250 (4%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---- 235
           S ++V+  L+   + QV ++  I  ++   L+ +G +  I    + PS     +      
Sbjct: 162 SIRQVIARLDRPIK-QVQIEAYIVTIQEGNLEDLGIRWGIQTQPNQPSMISQVNEAMLDV 220

Query: 236 ----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                        F +  +      +  L AL++ +    ++ P L   + + A    G 
Sbjct: 221 DLSMVAPSPSNTAFRMARLSQNILLDMELSALQKESKAEVISNPKLLTTNKRPAYIEQGS 280

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--P 349
           +  Y   +SS  A S+      + L  TP + S   + L +Q     P   +N G     
Sbjct: 281 EIPYLEAASSG-AASIAFKKAVLSLKVTPKITSKNDLLLDLQVTQDRPGNPINTGSGQAV 339

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   ++  T V +  G TIVL G+ +  +    + IPLL  +P+LGALFR +      +E
Sbjct: 340 AIDTQRIGTQVLVKDGETIVLGGIFQHSLSNAVDKIPLLGDVPLLGALFRRNYLQENRSE 399

Query: 410 IFIAATPFLV 419
           + I  TP ++
Sbjct: 400 LLIFVTPKVL 409


>gi|93006778|ref|YP_581215.1| type II and III secretion system protein [Psychrobacter
           cryohalolentis K5]
 gi|92394456|gb|ABE75731.1| type II and III secretion system protein [Psychrobacter
           cryohalolentis K5]
          Length = 750

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 112/272 (41%), Gaps = 33/272 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +N L+     QV ++  I EV  D   Q+G Q ++  ++SG       + G   VS 
Sbjct: 393 EDAVNQLDSR-RSQVLIQAAIVEVSGDDATQLGVQWALGNANSGYGVVNFNNVGASAVSL 451

Query: 242 GGDFSVKGVLDRFS------------------------FETVLHALERATAIRTLAEPTL 277
                  G     +                        +  +L AL+ +T+   L+ P++
Sbjct: 452 AAAALSGGTGISAAAGSIAGALLGIGSSSKDSKGNAQFYGAILQALDSSTSANLLSMPSI 511

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGL 330
             +  + AS   G    + T S +TG+        ++   D G+ L+  P + + G + L
Sbjct: 512 LTLDNEKASILVGQNVPFVTGSYTTGSDSSTNPFQTIDRQDIGINLNVIPHIGANGTVRL 571

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRK-ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  EVS  V G           +   +TT+      TI L GL++D+    ++ +P L 
Sbjct: 572 EVSQEVSSVVPGSAGNASGLITNKSLINTTILADDQQTIALGGLMRDNSTTRQQKVPGLG 631

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            +P++G LFR+   N +++ + I   P +++ 
Sbjct: 632 NVPLIGRLFRSDNDNSQKSNLIIFLQPTILRD 663


>gi|71900198|ref|ZP_00682337.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
 gi|71730031|gb|EAO32123.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
          Length = 603

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 104/259 (40%), Gaps = 29/259 (11%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI-------------------TGSSSGPSKSFA 231
              DQV ++  I        + +G +  +                     SS+  ++   
Sbjct: 336 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSHVTTADSSTSATRGLN 395

Query: 232 ADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
            D GG   +        +   +  +F+ +  L AL++ +    ++ P +   + +     
Sbjct: 396 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 455

Query: 289 SGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341
            G +  Y T++          +V   +  + L  TPT+ +  R+ L +     E+ + + 
Sbjct: 456 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 515

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             N G +P+   R+ +T V +  G T+V+ G+ +   +     +P L  +P LG LF+  
Sbjct: 516 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 575

Query: 402 RFNREETEIFIAATPFLVK 420
             ++++ E+ I  TP +++
Sbjct: 576 GKDKQKAELLIFVTPKVLR 594


>gi|257454588|ref|ZP_05619844.1| general secretion pathway protein D [Enhydrobacter aerosaccus SK60]
 gi|257447898|gb|EEV22885.1| general secretion pathway protein D [Enhydrobacter aerosaccus SK60]
          Length = 813

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 31/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +N L+    DQV ++  I E+  +  +Q+G Q ++  ++SG       + G   V  
Sbjct: 397 ENAINELDTR-RDQVLIQAAIMEISGNDTQQLGVQWAMGNANSGVGVINFNNIGASAVGL 455

Query: 242 GGDF----------SVKGVL------------DRFSFETVLHALERATAIRTLAEPTLTA 279
             +           SV G L            +R  +  +L A+ +      L+ P++  
Sbjct: 456 ASEILSKTPGTAAASVAGALLGIGTSKTDSNGNREFYGAILQAINKTNNANLLSMPSILT 515

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           +  + A+   G    + T S +T +        +V+  D G+ L+  P +   G + L I
Sbjct: 516 LDNEKANILVGQNVPFVTGSYTTASNSSTTPFQTVSRQDVGINLNVIPHIGDNGSVRLEI 575

Query: 333 QTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
             EVS  V G  N             TT+      T+ L GL++D+    ++ +P L   
Sbjct: 576 SQEVSSIVDGTLNNVSGVVTNKNLIKTTILADDQQTVALGGLMRDNSTYGQQKVPGLGDA 635

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           PILG LFR+   N ++T + +   P +++
Sbjct: 636 PILGNLFRSKSKNSDKTNLIVFLQPTILR 664


>gi|59712900|ref|YP_205676.1| pili ecretion protein PilQ [Vibrio fischeri ES114]
 gi|59481001|gb|AAW86788.1| pili ecretion protein PilQ [Vibrio fischeri ES114]
          Length = 582

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 138/337 (40%), Gaps = 40/337 (11%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN- 178
            + L       ++    +   +++ +V  G + T+  S+ ++ + E   S   R+   N 
Sbjct: 247 ASELAALSSEILSIKYAKASDIAELLVGEGEI-TMLSSRGSITVDERTNSLLLRDLPENI 305

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGG 236
           +  K +++ L+I  + QV ++  I  V    L ++G +  IT ++   +   S  ++   
Sbjct: 306 TVIKDIIDTLDIPIK-QVQIEARIVTVNEGNLDELGVRWGITNTNGSTTVGGSIESNLAA 364

Query: 237 KFVSEGGD--------------------------------FSVKGVLDRFSFETVLHALE 264
             + +GG                                 F V  +      +  L AL+
Sbjct: 365 VGLYDGGGSDDKKSGNNSLPVDDFLNVNLGLANPAASSIAFQVAKLGSDLLLDLELSALQ 424

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +    ++ P L   + + A    G +  Y   SSS GATSV+     + L  TP +  
Sbjct: 425 AESKAEIISSPRLITTNKKPAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVTPQITP 483

Query: 325 PGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             R+ L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  +    
Sbjct: 484 DNRLVLDLTVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVDNGETVVLGGIYQHSLSNSV 543

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           E +P+L  +P+LGALFR S  N  + E+ I  TP +V
Sbjct: 544 EKVPVLGDLPLLGALFRRSSENIGKKELLIFVTPKVV 580


>gi|293610712|ref|ZP_06693012.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827056|gb|EFF85421.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 721

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 104/281 (37%), Gaps = 39/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           +K+++LL++    QV ++  I        K++G +  I       + +            
Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 501

Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                    D G    +    F +  + D F  +  L AL+   
Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSD-FMLDLELSALQADG 560

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSP 325
               ++ P +     Q A   +G Q  Y+T ++S      S +  D  + L  TP++   
Sbjct: 561 YGEVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPD 620

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G+I +++             G++         T V + +G T++L G+ +      +  +
Sbjct: 621 GKIQMKLDISKDSVSGAAPNGEL-ILNKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKV 679

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P    +P +G LFR  + + ++ E+ I  TP +V    +R+
Sbjct: 680 PFFGDLPGIGRLFRKDQKSDDKQELLIFVTPRIVNDTLVRN 720


>gi|254374542|ref|ZP_04990023.1| type IV pilin multimeric outer membrane protein [Francisella
           novicida GA99-3548]
 gi|151572261|gb|EDN37915.1| type IV pilin multimeric outer membrane protein [Francisella
           novicida GA99-3548]
          Length = 594

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 104/260 (40%), Gaps = 23/260 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K+V+N ++I   DQV ++  I EV R    ++GF + +   S   +            + 
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390

Query: 242 GGDFSVK----------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           G   +                   V      +  + ALE  +    +A P L   + Q A
Sbjct: 391 GPTPTPTPTPVDTFVGTTAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA 450

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVI 341
               G    Y   ++S  A +V   +  + L  TP +   G I + I    +     P  
Sbjct: 451 FIKDGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGK 509

Query: 342 GVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               GD+P   + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG LF  
Sbjct: 510 TPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSY 569

Query: 401 SRFNREETEIFIAATPFLVK 420
           ++   +++E+ I  TP +++
Sbjct: 570 TKITDQDSELLIFITPKIIE 589


>gi|91791490|ref|YP_561141.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
 gi|91713492|gb|ABE53418.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
          Length = 705

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 112/288 (38%), Gaps = 48/288 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV  +     G Q +          +  A  G      
Sbjct: 337 ESVINQLDIR-RAQVLVEAIIVEVAENDDVGFGIQWASMAGGGTQFNNLGATIGEVGAGV 395

Query: 236 ----------------------GKFVSEGGDFSVKGV-----------LDRFSFETVLHA 262
                                        GD+++              +    F  ++ A
Sbjct: 396 WAAREKDVAQVTTIDANNKPVVSNNPKTEGDYTLLAQALGKVNGMAWGVASGDFGALIQA 455

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVL 316
           +   T    LA P++T +  Q ASF  G +    T S ++         +V   + GV L
Sbjct: 456 VSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNANPFQTVERKEVGVKL 515

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             TP +     + L I+ EVS   I    G   ++  R+  TTV   SG  +VL GL+ +
Sbjct: 516 KVTPQINEGTAVKLTIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLINE 573

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           ++Q+  + +P L  IP +G LF++S  ++++  + +   P +++   +
Sbjct: 574 EVQESIQKVPFLGDIPFIGHLFKSSSSSKKKKNLMVFIKPTIIRDGVI 621


>gi|1019923|gb|AAA79322.1| S-protein secretion D [Aeromonas hydrophila]
          Length = 737

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 13/235 (5%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V + V +AEV  +  + +G   S   +  G      +   G   + G + ++        
Sbjct: 464 VMIDVLLAEVSLNDKEGLGVDWSNIHTDLGAKDLIMSTANG-IGNSGLNLTLNSAGQT-- 520

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVT 308
               L+A          + P L   SG+ A    G +    T +S +          +V 
Sbjct: 521 -RAKLNAFYENKQAVIRSSPKLMVRSGEEARIEVGNEIPVVTGTSQSTDNPDAPINKTVQ 579

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGG 366
               GV+L   PTV + G + L I  E+SE      + D   P+   RK +T + L  GG
Sbjct: 580 YRKTGVILTIKPTVQASGVVDLTISQELSEQADTSTSTDALSPTIMNRKVNTALTLRDGG 639

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +++LAGL+     +   G+PLL  IP +G+LF++   ++  TE+ +   P++++ 
Sbjct: 640 SVMLAGLISSTKGEGDTGVPLLGDIPWIGSLFKSKSNSQNRTELVVMIIPYVLRD 694


>gi|332873777|ref|ZP_08441719.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6014059]
 gi|332738000|gb|EGJ68885.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6014059]
          Length = 712

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 39/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           +K+++LL++    QV ++  I        K++G +  I       + +            
Sbjct: 434 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 492

Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                    D G    +    F +  + D F  +  L AL+   
Sbjct: 493 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 551

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325
               ++ P +     Q+A   +G Q  Y++ ++S   ++   +  D  + L+ TP++   
Sbjct: 552 YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 611

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G+I +++             G++        +T V + +G T++L G+ +      +  +
Sbjct: 612 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKV 670

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 671 PFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 711


>gi|332750364|gb|EGJ80775.1| transport protein hofQ domain protein [Shigella flexneri 4343-70]
          Length = 170

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 2/166 (1%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            +  L ALE+   +  +A P L A   Q AS     +  Y+  S  +GATSV   +  + 
Sbjct: 2   LDLELSALEQKQQLDIIASPRLLASHLQPASIKQESEIPYQVSSGESGATSVEFKEAVLG 61

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           +  TPTVL  GRI L++    + P  V+    G++ +   ++ +T VE+ SG T+ L G+
Sbjct: 62  MEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGI 121

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 122 FTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 167


>gi|285019110|ref|YP_003376821.1| type IV pilus assembly protein pilq [Xanthomonas albilineans GPE
           PC73]
 gi|283474328|emb|CBA16829.1| probable type iv pilus assembly protein pilq [Xanthomonas
           albilineans]
          Length = 639

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 104/272 (38%), Gaps = 34/272 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-------- 233
           ++++N+++    DQV ++  I        + +G +  + G  S  S +            
Sbjct: 363 RELINVIDRP-VDQVLIEGRIVIATDTFARDLGARFGVAGRRSYGSNTGVVSGNLADNSS 421

Query: 234 ------------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                              G       G  +   +   FS +  L AL+       ++ P
Sbjct: 422 ILNNSLHNIPNGLNVNLPAGTFTTGNAGAIAYTLLGANFSLDMELSALQEEGRGEVISNP 481

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLR 331
            +   + + A    G    Y T++  TG      +V   +  + L  TPT+    R+ L 
Sbjct: 482 RIVTSNQREAVIRQGKDIAYVTITGGTGGAAATPNVQFKEVLLELKVTPTITDDNRVFLN 541

Query: 332 IQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           +     EV   V   N G +P    R+ +T V +  G T+V+ G+ +   +     +P L
Sbjct: 542 MNVKKDEVDHYVTLQNYGTVPEINRREINTAVLVDDGQTVVIGGVYEFTNRNSLAKVPFL 601

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +P LG LF+    ++ + E+ I  TP +++
Sbjct: 602 GDVPFLGNLFKQRGRSKAKAELLIFVTPKVMR 633


>gi|212709415|ref|ZP_03317543.1| hypothetical protein PROVALCAL_00454 [Providencia alcalifaciens DSM
           30120]
 gi|212687930|gb|EEB47458.1| hypothetical protein PROVALCAL_00454 [Providencia alcalifaciens DSM
           30120]
          Length = 344

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 125/312 (40%), Gaps = 38/312 (12%)

Query: 116 IERDIAHLEMTLRR-----FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  D       + +       ++    V+ +++++++        D+Q    L ET+L+Q
Sbjct: 61  VSIDANSTYQQITQPNMHLLSSNGKAHVDTITNSLIIT-------DTQERFALIETWLTQ 113

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
               Q                   QV +   I    R  L+ +G +  +   S+      
Sbjct: 114 KDIPQ------------------QQVQITAHIISSSRTALQALGLEWGVHNDSATDGHHS 155

Query: 231 AADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +   ++ S+ G  ++  + L     E  L+ALE+   +  +A P L A     AS   
Sbjct: 156 RYN---RYSSQSGQMALNVLRLGEGLLEMKLNALEKENLLSIIASPRLVASHKNPASIQQ 212

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGD 347
           G +  Y T S     + V   D  + +  TPT+     + + ++   + P      N   
Sbjct: 213 GSEIPYVTTSEK--KSHVQFKDAVLGMEVTPTISRNDNVEMVLKISHNSPDTALTTNPNQ 270

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             +   ++  T+V + +  T++L G+ +   ++   G+P LS+IP+LG LF N   + ++
Sbjct: 271 HLAINKQEIATSVTIKNNNTLILGGIFQQKQEKTDSGVPFLSQIPLLGNLFINKTQHVDK 330

Query: 408 TEIFIAATPFLV 419
             + +  TP L+
Sbjct: 331 RVLVVFITPKLI 342


>gi|254487874|ref|ZP_05101079.1| general secretion pathway protein D [Roseobacter sp. GAI101]
 gi|214044743|gb|EEB85381.1| general secretion pathway protein D [Roseobacter sp. GAI101]
          Length = 644

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 131/292 (44%), Gaps = 21/292 (7%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSF 230
            Q   +   +++  L++    QV ++  I EV  D+ +++G Q  I  ++   S    SF
Sbjct: 337 TQRQLAEVSQLIKALDVRRP-QVMIEAAIVEVSGDVAERLGVQLGIGENTETGSIAATSF 395

Query: 231 AADFG---------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
               G         G+  +      +   L   SF  ++ AL  +T+   L+ P++T + 
Sbjct: 396 GNGGGSLQNVLVALGQSNAAALSTGLSVGLASDSFGALIQALNTSTSANLLSTPSVTTMD 455

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            QSA+   G    ++T   +T   +V       D G+ +   P + + G + L I+ EVS
Sbjct: 456 NQSATIVVGQNVPFRTGRLTTDGGNVAEVIEREDVGITMVVKPRITAGGVVQLEIEQEVS 515

Query: 338 EPVIGVNAGDMPSYRVRK-ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                   G       R+  +TTV   +GGT+VL GL+ DD  Q  + +PLL  +P+LG 
Sbjct: 516 SLTNQAVTGAADLVTNRRVINTTVLAENGGTVVLGGLITDDRLQNNQKVPLLGDVPVLGN 575

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD-HYSVEDDAKAFFFNR 447
           LF++   +R +  +F+   P ++  +   DL +  +  Y    +A+A    R
Sbjct: 576 LFKSRNNSRSKRTLFVFLRPTIM--LTRADLEKAAETRYRRAQNAEATVQPR 625


>gi|71899610|ref|ZP_00681765.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
 gi|71730652|gb|EAO32728.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
          Length = 775

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 136/344 (39%), Gaps = 47/344 (13%)

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
           + +V LH    T+  S  AVE   T L ++    +   S + V+  L++    QV ++  
Sbjct: 436 NGSVTLHVQGDTVGVS--AVEEINTLLVRATPQAW--RSIRDVIEKLDVM-PMQVHIEAQ 490

Query: 202 IAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +AEV        G       S         +G S       G    S  G    K +  +
Sbjct: 491 VAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAGRSGWKSIAGK 550

Query: 254 F------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                        +   +++AL++ T +R L  P++   +   A+   G +    + S +
Sbjct: 551 VTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGARIPINSTSIN 610

Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGV 343
           TG       +SV   D GV+L   P V   G + L I  EVS P             +  
Sbjct: 611 TGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGSLPAACSSASSTLVN 670

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +A        R+  T   + SG TI+LAGL+  +  +   G+P LSK+PI+G LF     
Sbjct: 671 SAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQ 730

Query: 404 NREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFN 446
           N    EI +  TP +V+ P   R+L    D YS + +A      
Sbjct: 731 NNNRREIIVLLTPEIVRNPQEARNL---TDEYSQKFNAMEPLPG 771


>gi|332851353|ref|ZP_08433405.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013150]
 gi|332868764|ref|ZP_08438387.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013113]
 gi|332730069|gb|EGJ61397.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013150]
 gi|332733193|gb|EGJ64390.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013113]
          Length = 712

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 39/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230
           +K+++LL++    QV ++  I        K++G +  I       + +            
Sbjct: 434 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 492

Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                    D G    +    F +  + D F  +  L AL+   
Sbjct: 493 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 551

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325
               ++ P +     Q+A   +G Q  Y++ ++S   ++   +  D  + L+ TP++   
Sbjct: 552 YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 611

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G+I +++             G++        +T V + +G T++L G+ +      +  +
Sbjct: 612 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKV 670

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P    IP++G LFR    + ++ E+ I  TP +V     R+
Sbjct: 671 PFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 711


>gi|84394142|ref|ZP_00992875.1| MSHA biogenesis protein MshL [Vibrio splendidus 12B01]
 gi|84375244|gb|EAP92158.1| MSHA biogenesis protein MshL [Vibrio splendidus 12B01]
          Length = 492

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 121/323 (37%), Gaps = 33/323 (10%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           ++E     ++  G  +++  + +A  ++        R        ++ + +     + QV
Sbjct: 166 QLEAAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIRE------VREFLGISQKRLQRQV 219

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VL 251
            L+  I EV      Q G   S    S G                    S+ G      +
Sbjct: 220 ILEAKIMEVTLSDGYQQGISWSNLSKSIGSGGVVIDRPASTLPPLDAISSLLGGQTNVTI 279

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA------ 304
              SFE VL  ++    +  L+ P +TA + Q A    G    Y T +SSS G+      
Sbjct: 280 SDGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTDLSSSVGSGDDANV 339

Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----------PVIGVNAGDMPS 350
                +T    G+ L  TP +   G + L +   V E              G+    +  
Sbjct: 340 APEVELTPFFSGISLDVTPQIDDKGSVFLHVHPAVIEVEEEVKELNLGSTTGIVQLPLAK 399

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++D+ +    G  +V+ GL+K +   +   +P L  IP LG LFRN+    ++TE+
Sbjct: 400 SSIRESDSVIRAKDGDVVVIGGLMKSNTSDVTSKVPFLGDIPALGHLFRNTNQLTQKTEL 459

Query: 411 FIAATPFLVK-PVAMRDLSRPDD 432
            I   P +V       +L R  D
Sbjct: 460 VILLKPTIVGVNTWQSELERSRD 482


>gi|121607671|ref|YP_995478.1| general secretion pathway protein D [Verminephrobacter eiseniae
           EF01-2]
 gi|121552311|gb|ABM56460.1| general secretion pathway protein D [Verminephrobacter eiseniae
           EF01-2]
          Length = 720

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 129/282 (45%), Gaps = 16/282 (5%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A EL+ + L  S R +YA    +  +  L++    QV ++ +I EV  +   + G Q + 
Sbjct: 417 ADELNNSVLVWSTRAEYAK--IESTLRRLDLP-PTQVLIEASIIEVTLNDDLRYGLQWAF 473

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD-------FSVKGVLDRFSFETVLHALERATAIRTL 272
             S SG  +   A       S GG        FS        +   +L+ L   T ++ +
Sbjct: 474 NDSRSGIDRGQGALSSRDGTSTGGILGGALAGFSYALKSPAGAVRAMLNVLSAKTTVKVV 533

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSST-----GATSVTTHDYGVVLHFTPTVLSPGR 327
           A P+L  +   +AS   G Q   +  ++S       +T++   D GV L  TP+V +   
Sbjct: 534 ASPSLMVLDNHTASIAVGDQTPIQAGTTSNLEGTVTSTNIEYKDTGVNLVVTPSVNAGNI 593

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + ++I   V++        +  ++  R+  + V + SG +IV+ GL+++     K GIP+
Sbjct: 594 VTMQIDQSVTDVGAKDEVTNQRAFLQRQLSSKVSVRSGESIVMGGLIQESSSSTKSGIPV 653

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
           L  +P+ G LF  +  +   TE+ +  TP +V+  + +R +S
Sbjct: 654 LHALPLFGNLFGTTVNDGRRTELLVIITPRVVRSDIDIRQVS 695


>gi|238787297|ref|ZP_04631096.1| General secretion pathway protein D [Yersinia frederiksenii ATCC
           33641]
 gi|238724559|gb|EEQ16200.1| General secretion pathway protein D [Yersinia frederiksenii ATCC
           33641]
          Length = 657

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 101/253 (39%), Gaps = 12/253 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGK 237
            +V+  L+I    QV ++  I E +      +G Q +             +S     G +
Sbjct: 348 DQVIEKLDIR-RAQVLVEAIIVETQNGEGLNLGVQWANKFHGGVNFLQNPESVKNKNGSE 406

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
            +       +     + +++ +  AL        LA P++  +    A F  G +     
Sbjct: 407 NIVPKLITGLTAGFYKGNWDGLFTALATNLNNNILATPSIVTLDNMEAEFNVGQEVPILT 466

Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPS 350
             +T ++     S++    GV+L   P +     + L I+ EVS      +         
Sbjct: 467 STQTTTTDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDINTHNLGSV 526

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+V+ GLL   + +    +PLL  IP +GALFR S+   E++ +
Sbjct: 527 FNKRIVNNAVLVKSGETVVVGGLLDKKVNKTINKVPLLGDIPFIGALFRQSKEKVEKSNL 586

Query: 411 FIAATPFLVKPVA 423
            +   P +++  +
Sbjct: 587 ILFIKPTILRETS 599


>gi|71274709|ref|ZP_00650997.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Dixon]
 gi|170730050|ref|YP_001775483.1| general secretory pathway protein D [Xylella fastidiosa M12]
 gi|71164441|gb|EAO14155.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Dixon]
 gi|167964843|gb|ACA11853.1| general secretory pathway protein D precursor [Xylella fastidiosa
           M12]
          Length = 775

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 136/344 (39%), Gaps = 47/344 (13%)

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
           + +V LH    T+  S  AVE   T L ++    +   S + V+  L++    QV ++  
Sbjct: 436 NGSVTLHVQGDTVGVS--AVEEINTLLVRATPQAW--RSIRDVIEKLDVM-PMQVHIEAQ 490

Query: 202 IAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +AEV        G       S         +G S       G    S  G    K +  +
Sbjct: 491 VAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAGRSGWKSIAGK 550

Query: 254 F------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                        +   +++AL++ T +R L  P++   +   A+   G +    + S +
Sbjct: 551 VTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGARIPINSTSIN 610

Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGV 343
           TG       +SV   D GV+L   P V   G + L I  EVS P             +  
Sbjct: 611 TGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGSLPAACSSASSTLVN 670

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +A        R+  T   + SG TI+LAGL+  +  +   G+P LSK+PI+G LF     
Sbjct: 671 SAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQ 730

Query: 404 NREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFN 446
           N    EI +  TP +V+ P   R+L    D YS + +A      
Sbjct: 731 NNNRREIIVLLTPEIVRNPQEARNL---TDEYSQKFNAMEPLPG 771


>gi|26987782|ref|NP_743207.1| general secretion pathway protein D [Pseudomonas putida KT2440]
 gi|24982477|gb|AAN66671.1|AE016295_4 type II secretion pathway protein XcpQ [Pseudomonas putida KT2440]
          Length = 584

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 104/267 (38%), Gaps = 26/267 (9%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ + ++  L+I    QV ++  IAEV     +++G Q        G         G   
Sbjct: 272 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 330

Query: 239 --------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                                + G    +      F+F  +++AL+  +    L+ PTL 
Sbjct: 331 ASIAGAAASGDNEALGDLLSTTTGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLL 390

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    AS   G +  + T S +        ++   + GV L   P +     + L I  
Sbjct: 391 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQ 450

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           EVS      +A D+ +   R+  T V +   G ++L GL+ D++    + +PLL  IP L
Sbjct: 451 EVSSIADTSSASDVIT-NKREIKTKVMVEDNGLVILGGLISDELSTSDQRVPLLGDIPYL 509

Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421
           G LFR+      +  + +   P +++ 
Sbjct: 510 GRLFRSDATRNTKQNLMVFIRPRILRD 536


>gi|330831366|ref|YP_004394318.1| MSHA biogenesis protein MshL [Aeromonas veronii B565]
 gi|328806502|gb|AEB51701.1| MSHA biogenesis protein MshL [Aeromonas veronii B565]
          Length = 557

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/274 (25%), Positives = 113/274 (41%), Gaps = 36/274 (13%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS-----------ITGSSSGPSKSFAADFGGKFVSE 241
           + QV L+  I EV  +   + G   S           ITG  S  +    +     F + 
Sbjct: 276 KRQVVLEARIIEVALNEGYEQGVDWSGLSASWDGNKGITGGQSLANTQLPSTPNQIFSAL 335

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           GG    K  +   +F   ++ L+    + TL+ P +TA + Q A    G    Y T +S+
Sbjct: 336 GGGAGFK--ISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYYVTNAST 393

Query: 302 T-----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGV 343
           T               +T    G+ L  TP +   G++ L I   V           +G 
Sbjct: 394 TITTTSTGTDKTPNVELTPFFSGIALDVTPQIDEEGKVLLHIHPSVIDTEEQNKVIDMGT 453

Query: 344 NAG----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           + G     +    +R++DT V+  +G  IV+ GL+K D Q++   +PLL  IP +G  F 
Sbjct: 454 SGGKLQLPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPWVGEAFT 513

Query: 400 NSRFNREETEIFIAATPFLV-KPVAMRDLSRPDD 432
           N R + ++ E+ I   P +V K     +L R  +
Sbjct: 514 NRRESTKKVELVIMLKPTVVEKDTWQNELQRSSE 547


>gi|160901009|ref|YP_001566591.1| type IV pilus secretin PilQ [Delftia acidovorans SPH-1]
 gi|160366593|gb|ABX38206.1| type IV pilus secretin PilQ [Delftia acidovorans SPH-1]
          Length = 716

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 118/330 (35%), Gaps = 43/330 (13%)

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
            I        V      R + +   A+    T             + K ++  L++    
Sbjct: 391 QITANNSGGGVGNSVSSRFLSERGSAISEPRTNQLFVTDTPAKLEAVKALLLTLDVP-VR 449

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITG--------------------SSSGPSKSFAADF 234
           QV ++  I E R    + +G +                           +G   + A+  
Sbjct: 450 QVLIEARIVEARDTFGRALGVRLGGGDLRAQRGGDGGYGIGGDNRLVFGTGYENAVASSG 509

Query: 235 GGKFVSEGGDFS------VKGVLDRFSF-------------ETVLHALERATAIRTLAEP 275
            G  V+  G+F       + GV    SF                L A+E     + ++ P
Sbjct: 510 SGGTVNTSGNFVNLPAAKLTGVSGTGSFALSIFNSAANRFLALELSAMEADGQGKIISSP 569

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L       A    G ++ Y +V++  GAT++      + L  TP +   G I L +  +
Sbjct: 570 RLVTADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVTPQITPEGDIILDL--D 626

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           V++   G       +   +   T V + +GGT+V+ G+ + +    +  IP L  +P+LG
Sbjct: 627 VNKDSRGETTTQGVAIDTKHIKTQVLVQNGGTVVIGGIFEMEETNQESKIPFLGDVPVLG 686

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            LF++     ++ E+ +  TP ++     R
Sbjct: 687 HLFKSRVRESQKREMLVFITPKMISDGLKR 716


>gi|319944755|ref|ZP_08019019.1| fimbrial assembly protein PilQ [Lautropia mirabilis ATCC 51599]
 gi|319742004|gb|EFV94427.1| fimbrial assembly protein PilQ [Lautropia mirabilis ATCC 51599]
          Length = 747

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 3/207 (1%)

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            T   +    SF A             S+ G          L ALE     + ++ P + 
Sbjct: 543 ATALDNTNFFSFPAGGINGTNPASLAISLFGSSLSRFINLELSALEADQRGKVVSSPRVL 602

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
             S + A    G +  Y++ +SS GATSV+     + L  TP +   G + L +  +VS 
Sbjct: 603 TSSQRPAVIEQGTELPYQSATSS-GATSVSFRKANLRLEVTPQITPEGNVILDV--DVSR 659

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             +G       +   R   T V +  GGT+V+ G+ +   +   + +PLL  IP+LG LF
Sbjct: 660 DAVGQLTNAGYAIDTRHVKTQVLVEDGGTVVIGGIYEQFERNRTDKVPLLGDIPVLGYLF 719

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMR 425
           R++    + TE+ +  TP +V     +
Sbjct: 720 RSTTRTNDRTELLVFLTPRIVTDTLAQ 746


>gi|218708368|ref|YP_002415989.1| MSHA biogenesis protein MshL [Vibrio splendidus LGP32]
 gi|218321387|emb|CAV17337.1| MSHA biogenesis protein MshL [Vibrio splendidus LGP32]
          Length = 554

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/333 (21%), Positives = 127/333 (38%), Gaps = 43/333 (12%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           ++E+    ++  G  +++  + +A  ++        R        ++ + +     + QV
Sbjct: 218 QLEVAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIRE------VREFLGISQKRLQRQV 271

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------------GGKFVSE 241
            L+  I EV      Q G   +   SS+G + +                    G   +  
Sbjct: 272 ILEAKIMEVTLSDGYQQGINWTKMFSSNGTNYTVGMGSIVKNAAGTIIPGTLPGMDPIGA 331

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSS 300
                   V+   SFE VL  ++    +  L+ P +TA + Q A    G    Y T +SS
Sbjct: 332 ALGGQSNLVVSGGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTELSS 391

Query: 301 STGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----------PV 340
           S G+           +T    G+ L  TP +   G + L +   V E             
Sbjct: 392 SVGSGDNANVAPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEVKELNLGST 451

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            G+    +    +R++D+ +    G  +V+ GL+K +   +   +P L  IP LG LFRN
Sbjct: 452 TGIVKLPLAKSSIRESDSVIRAQDGDVVVIGGLMKSNTSDMTSKVPFLGDIPALGHLFRN 511

Query: 401 SRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
           +    ++TE+ I   P +V     + +L R  D
Sbjct: 512 TSQLTQKTELVILLKPTIVGVNTWLTELERSRD 544


>gi|85711535|ref|ZP_01042593.1| Type II secretory pathway, component PulJ [Idiomarina baltica
           OS145]
 gi|85694687|gb|EAQ32627.1| Type II secretory pathway, component PulJ [Idiomarina baltica
           OS145]
          Length = 404

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 10/249 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S  K+++  L+I    QV ++  +  ++ + ++Q G +       +          G + 
Sbjct: 154 SGIKQLITQLDIP-VKQVMIEARMVTMKSNAIEQFGVRWGDLTPRNDDQVIADVIDGMRV 212

Query: 239 ----VSEGGDF--SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
               V   G    +V  + +    +  L A+E+      +A P +   + Q A    G +
Sbjct: 213 ELPAVPAAGRLKANVGKLSEGLLLDLELSAMEQDNEAEIIARPKIFTSNQQPAYIEQGTE 272

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-- 350
             Y   S+++GAT+V      + L  TP + S   + L +    +     V+    P+  
Sbjct: 273 FPYVE-SAASGATAVKFKKAVMGLRVTPQITSNDYVMLDLTITQNTRGDTVSTPTGPAVA 331

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++  T V + SG TIVL G+ +    +   G+P+LS +P +G LF+N R   E+ E+
Sbjct: 332 IDTQEMATRVLVKSGETIVLGGIFQQYELKDDTGVPILSSLPFVGNLFKNQREQSEKREL 391

Query: 411 FIAATPFLV 419
            I  TP L+
Sbjct: 392 VIFVTPTLL 400


>gi|301058098|ref|ZP_07199150.1| general secretion pathway protein D [delta proteobacterium NaphS2]
 gi|300447730|gb|EFK11443.1| general secretion pathway protein D [delta proteobacterium NaphS2]
          Length = 749

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 112/260 (43%), Gaps = 15/260 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++ TIAEV  D   Q G ++++   ++  + +F A  G      GG     GV +
Sbjct: 494 PRQVLIQATIAEVTLDSSTQFGVEYALGHGAAVGNAAFMATLG-----SGGLQYSVGVTN 548

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TS 306
           +  +   L AL     +  ++ P + A   Q A      +    + +++  +      T+
Sbjct: 549 K--WYAELTALATKGKLNVISSPHVLASDNQEAKIDVSREIPLASGTTNVSSGTTISETT 606

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPS 364
           +   D GV+L  TP +   G + + +  EVS       V   + P++  R   TT+ +  
Sbjct: 607 IEYRDTGVILSVTPHINERGLVTMDVDEEVSNYEGNQPVAGNEYPTFSKRVVKTTLTVGH 666

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G TI + GL++D   +   G+P L  +P++  L  +     E+ E+ +  TP +V  +  
Sbjct: 667 GQTIAIGGLIRDRENEETRGLPCLVDVPVVKYLTGSWNKETEKIELIVLITPRVVANMDD 726

Query: 425 RDLSRPDDHYSVEDDAKAFF 444
            +    +    V+   K F+
Sbjct: 727 VEAVTNEFKQKVQGVMKQFY 746


>gi|157959974|ref|YP_001500008.1| general secretion pathway protein D [Shewanella pealeana ATCC
           700345]
 gi|157844974|gb|ABV85473.1| general secretion pathway protein D [Shewanella pealeana ATCC
           700345]
          Length = 710

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 109/280 (38%), Gaps = 43/280 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVGEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGV 394

Query: 236 -------GKFVSEGGD---------------------FSVKGVLDRFSFETVLHALERAT 267
                  G  V   G                        +   +    F  ++ A+   T
Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFAALIQAVSSDT 454

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPT 321
               LA P++T +  Q ASF  G +    T S ++         +V   + GV L   P 
Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     + L I+ EVS   I    G   ++  R+  TTV   SG  +VL GL+K+++Q+ 
Sbjct: 515 INEGSSVKLTIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLIKEEVQES 572

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            + +P L  IPI+G LF++S   +++T + +   P +++ 
Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKTNLMVFIKPTIIRD 612


>gi|313497412|gb|ADR58778.1| General secretion pathway protein D [Pseudomonas putida BIRD-1]
          Length = 584

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 104/267 (38%), Gaps = 26/267 (9%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ + ++  L+I    QV ++  IAEV     +++G Q        G         G   
Sbjct: 272 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 330

Query: 239 --------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                                + G    +      F+F  +++AL+  +    L+ PTL 
Sbjct: 331 ASIAGAAASGDNEALGDLLSTTTGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLL 390

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    AS   G +  + T S +        ++   + GV L   P +     + L I  
Sbjct: 391 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINVDNSVRLDIVQ 450

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           EVS      +A D+ +   R+  T V +   G ++L GL+ D++    + +PLL  IP L
Sbjct: 451 EVSSIADTSSASDVIT-NKREIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYL 509

Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421
           G LFR+      +  + +   P +++ 
Sbjct: 510 GRLFRSDATRNTKQNLMVFIRPRILRD 536


>gi|254254052|ref|ZP_04947369.1| Type II secretory pathway component HofQ [Burkholderia dolosa
           AUO158]
 gi|124898697|gb|EAY70540.1| Type II secretory pathway component HofQ [Burkholderia dolosa
           AUO158]
          Length = 735

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 126/312 (40%), Gaps = 30/312 (9%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            D   +   LR+ I   ++ V+   + +VL     T+Q ++R V                
Sbjct: 300 ADAKSVMAALRQIIKPKDVYVDERVNAIVLRDTPDTVQVAERVVMG-------------- 345

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                     L+I  + +VTL V + EV  +    +G Q+      S  + +        
Sbjct: 346 ----------LDIP-QSEVTLDVQVLEVNMNDSLDLGVQYPGKLQFSALAGADGGALTLG 394

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            +       +    +  +    +  L++    RTLA P +   + + AS   G +    T
Sbjct: 395 DLLRLNRDRIGVSSESGALSMAIDLLQKQGKTRTLANPKIRVRNMEKASIKIGERVPIVT 454

Query: 298 VSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYR 352
            +++ G  +  V+  D G++L   P +     + +++  EVS  +            S  
Sbjct: 455 TTNANGVVTESVSYQDVGLMLKVEPRISLDDEVSVKVNMEVSSILSKETTKTGLVAYSLG 514

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A+T +   +G T +LAGL+K +      G+P +S +PI+G LF +   + + +EI +
Sbjct: 515 TRNAETLMTARNGQTQILAGLVKRNETDNASGLPGVSGLPIVGRLFGSHGRSHDRSEIVL 574

Query: 413 AATPFLVKPVAM 424
             TP + + + +
Sbjct: 575 LITPHIERNLDL 586


>gi|15838128|ref|NP_298816.1| general secretory pathway protein D precursor [Xylella fastidiosa
           9a5c]
 gi|9106563|gb|AAF84336.1|AE003982_9 general secretory pathway protein D precursor [Xylella fastidiosa
           9a5c]
          Length = 775

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 136/344 (39%), Gaps = 47/344 (13%)

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
           + +V LH    T+  S  AVE   T L ++    +   S + V+  L++    QV ++  
Sbjct: 436 NGSVTLHVQGDTVGVS--AVEEINTLLVRATPQAW--RSIRDVIEKLDVM-PMQVHIEAQ 490

Query: 202 IAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +AEV        G       S         +G S       G    S  G    K +  +
Sbjct: 491 VAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAGRSGWKSIAGK 550

Query: 254 F------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                        +   +++AL++ T +R L  P++   +   A+   G +    + S +
Sbjct: 551 VTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGARIPINSTSIN 610

Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGV 343
           TG       +SV   D GV+L   P V   G + L I  EVS P             +  
Sbjct: 611 TGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGSLPAACSSASSTLVN 670

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +A        R+  T   + SG TI+LAGL+  +  +   G+P LSK+PI+G LF     
Sbjct: 671 SAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQ 730

Query: 404 NREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFN 446
           N    EI +  TP +V+ P   R+L    D YS + +A      
Sbjct: 731 NNNRREIIVLLTPEIVRNPQEARNL---TDEYSQKFNAMEPLPG 771


>gi|114321906|ref|YP_743589.1| type IV pilus secretin PilQ [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228300|gb|ABI58099.1| type IV pilus secretin PilQ [Alkalilimnicola ehrlichii MLHE-1]
          Length = 694

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 107/257 (41%), Gaps = 23/257 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
           + ++N L+I    QV ++  I     D  + +G +   T + S  S+  A          
Sbjct: 433 RNLVNRLDIP-VQQVLIESRIVIADDDFSRDLGVRFGYTATGSLGSEGTAIGARPTPTPG 491

Query: 232 --------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                    D      +     ++  + DR   +  L A+E       ++ P +   + +
Sbjct: 492 IDGTDDLMVDLPAPAEAPRLGLAIGRIGDRL-LQLELSAMETEGRGEVISSPRVITANQR 550

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            A+   G +  Y+  ++S GAT+V   +  + L  TP +    R+ + +  EVS   +G 
Sbjct: 551 EANIRQGVEIPYQEETAS-GATNVEFKEAVLGLTVTPQITPDDRVIMNL--EVSNDTVGE 607

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +PS   +   T V + +G T+VL G+ +    +    +P    +P +G LFRN   
Sbjct: 608 VFAGVPSIDTQSVTTQVLVDNGETVVLGGVYERASGEQTRRVPFFGSLPGVGWLFRNRLT 667

Query: 404 NREETEIFIAATPFLVK 420
             E++E+ +  TP ++ 
Sbjct: 668 FDEQSELLVFVTPRILD 684


>gi|172059384|ref|YP_001807036.1| type IV pilus secretin PilQ [Burkholderia ambifaria MC40-6]
 gi|171991901|gb|ACB62820.1| type IV pilus secretin PilQ [Burkholderia ambifaria MC40-6]
          Length = 553

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 102/250 (40%), Gaps = 17/250 (6%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
            +++ ++     QV ++  I E  +   + +G + ++      P+   AA          
Sbjct: 275 GLIDAIDRP-SRQVRIEARIVEGEQGFSRNLGARIALRAQGRAPTADGAASATDTRNALD 333

Query: 236 ------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                 G F +    F++         +  L ALE     + ++ P +       A    
Sbjct: 334 LAARPLGGFEAATAGFTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQ 393

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
           G +  Y+      G + V      + L   P +   GR+ L +  +V++  IG      P
Sbjct: 394 GSELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGP 450

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   +   T VE+ +GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E
Sbjct: 451 AIHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSE 510

Query: 410 IFIAATPFLV 419
           + +  TP +V
Sbjct: 511 LVVFITPTVV 520


>gi|330502644|ref|YP_004379513.1| general secretion pathway protein D [Pseudomonas mendocina NK-01]
 gi|328916930|gb|AEB57761.1| general secretion pathway protein D [Pseudomonas mendocina NK-01]
          Length = 647

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/271 (25%), Positives = 117/271 (43%), Gaps = 28/271 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------TGS 222
           ++ + ++  L++    QV ++  I EV  DI   +G Q ++                TG 
Sbjct: 330 ATLEDIVRQLDVP-RAQVMVEAAIVEVSGDITDALGVQWAVDARGRTGGLGGVNFGGTGL 388

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           S G              +   D ++ GV     F  ++ AL   +    L+ P+L  +  
Sbjct: 389 SVGTVLQILQSGEIPENTTLPDGAIIGVGSD-RFGALITALSANSKSNLLSTPSLLTLDN 447

Query: 283 QSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           Q A    G    ++T S +T A       T++   D GV L  TP +     + L I+ E
Sbjct: 448 QKAEILVGQNVPFQTGSYTTDASGAGNPFTTIERKDIGVTLKVTPHINEGATLRLEIEQE 507

Query: 336 VSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           +S   P  G+NA  +      R   +T+    G  IVL GL++DD+ Q    +PLL  IP
Sbjct: 508 ISSIAPSTGLNAQAVDLVTNKRSIKSTILADDGQVIVLGGLIQDDVTQATSKVPLLGDIP 567

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +LG LFR++R +  +  + +   P +V+  A
Sbjct: 568 LLGGLFRSTRDSHIKRNLMVFLRPTVVRDGA 598


>gi|254522160|ref|ZP_05134215.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
 gi|219719751|gb|EED38276.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
          Length = 733

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 129/315 (40%), Gaps = 36/315 (11%)

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
           +R   + +I +E+  D V +            AVE + T L +S    +   S ++V+  
Sbjct: 404 QRQSGNVSISLEVEGDRVGVS-----------AVEETNTLLVRSTPQAW--RSIREVIEK 450

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------PSKSFAADFGGKFVS 240
           L++    QV ++  +AEV      + G       +  G          +  A  GG + S
Sbjct: 451 LDVM-PLQVHIEAQVAEVALTGDLKYGVNWFFDNAVLGQKLTGALGGVTLPAAAGGSWSS 509

Query: 241 EGGDFS----VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             G  +    +       +   V+ AL++ T +R L  P++   +   A+   G +    
Sbjct: 510 FAGAVTGADGLGWAFTGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGDKVPIN 569

Query: 297 TVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNA 345
           T + +TG      +SV   D GV+L   P V   G + L I  EVS              
Sbjct: 570 TTTVNTGVGTSSYSSVQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASDVPETCNPTER 629

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P    +K  T   + SG TI+LAGL+ D       GIP LSKIP++GALF       
Sbjct: 630 NCNPRISTKKLSTEAAVQSGDTIMLAGLITDSATDGSSGIPGLSKIPVVGALFGQKTRTS 689

Query: 406 EETEIFIAATPFLVK 420
             +E+ +  TP +V+
Sbjct: 690 RRSEVIVLLTPTIVR 704


>gi|119773594|ref|YP_926334.1| MSHA biogenesis protein MshL [Shewanella amazonensis SB2B]
 gi|119766094|gb|ABL98664.1| MSHA biogenesis protein MshL [Shewanella amazonensis SB2B]
          Length = 561

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 26/253 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGKFVSEGGDF 245
           + QV L+  + EV      Q G Q +         G++     + A +  G  +S     
Sbjct: 285 QRQVILEAKVLEVTLSDGYQQGIQWNKIAGSALADGNTKINFATSAGNEFGNQISSALGG 344

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302
                +    F+ +++ L+    +  L+ P +TA + Q A    G    + T  SST   
Sbjct: 345 VTSLSIIGSDFDAMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGKDEYFVTDVSSTTVA 404

Query: 303 GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR--- 352
           G T VT+ +        G+ L  TP +   G + L +   V +         + +     
Sbjct: 405 GTTPVTSPEVELTPFFSGIALDVTPQIDGQGNVLLHVHPSVIDVKEQTKTIKISNSDLEL 464

Query: 353 ------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
                 +R++DT ++  SG  +V+ GL+K +  +L   +PLL  IP LG  F N   +  
Sbjct: 465 PLAQSEIRESDTVIKAMSGDVVVIGGLMKSESLELVSKVPLLGDIPFLGEAFTNRSQSVR 524

Query: 407 ETEIFIAATPFLV 419
           +TE+ I   P +V
Sbjct: 525 KTELVILLKPTVV 537


>gi|91776807|ref|YP_546563.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91710794|gb|ABE50722.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 723

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 3/200 (1%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G S   ++    +           FS+  +   F     L ALE     + ++ P +T  
Sbjct: 521 GVSPDGAQDLNVNLPVANAFGNFAFSLFRLPAGFLLNLELSALETDQRGKIVSSPRVTTA 580

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           + Q A    G Q  ++  +SS GAT+V   +  + L  TP +    +I + ++ +  +  
Sbjct: 581 NQQKAIIEQGTQIPFQQATSS-GATAVQFKNASLSLEVTPQITPDEKIIMDLEVKKDK-- 637

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +GV   ++PS   ++  T V + +G T VL G+ +   +   + +P    +P LG +F+ 
Sbjct: 638 VGVVFNNVPSIDTQRVQTQVLVANGETAVLGGIYEQTERNDVDKVPFFGDLPFLGNVFKR 697

Query: 401 SRFNREETEIFIAATPFLVK 420
                ++TE+ I  TP ++ 
Sbjct: 698 RVKQSDKTELLIFITPKVMD 717


>gi|238921473|ref|YP_002934988.1| protein transport protein HofQ [Edwardsiella ictaluri 93-146]
 gi|238871042|gb|ACR70753.1| protein transport protein HofQ [Edwardsiella ictaluri 93-146]
          Length = 409

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 104/250 (41%), Gaps = 9/250 (3%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +  L++    QV L   I  + ++ L+++G + S     S    +     G         
Sbjct: 162 IAQLDVPLP-QVQLAAHIVSISQEGLRELGIRWSSGDQRSRGQDTLR---GAADAYFSAG 217

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F V  +  + +    L ALER   +  +A P L A  GQ+AS   G +  Y       G 
Sbjct: 218 FQVARIGGQ-TLAVALAALERQDKVAIIASPHLMAAHGQTASIKQGSELPYAVSGGERGV 276

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVEL 362
           +++   +  + +  TP +L+  RI L +Q   + P   V  GD  +     ++  T V L
Sbjct: 277 STMEFKEAVLGMSVTPRILADARIELALQISQNMPGRVVRQGDSEALAIDKQEITTQVTL 336

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
             G T +L G+ +   Q    G P L+ +P+LG L R+        E+ I  TP L+   
Sbjct: 337 ADGDTAMLGGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSAS 396

Query: 423 A--MRDLSRP 430
           +   R L  P
Sbjct: 397 SLLPRTLRPP 406


>gi|212633091|ref|YP_002309616.1| type II and III secretion system protein:NolW-like protein
           [Shewanella piezotolerans WP3]
 gi|212554575|gb|ACJ27029.1| Type II and III secretion system protein:NolW-like protein
           [Shewanella piezotolerans WP3]
          Length = 721

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 107/280 (38%), Gaps = 43/280 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVSEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 394

Query: 236 -------GKFVSEGGD---------------------FSVKGVLDRFSFETVLHALERAT 267
                  G  V   G                        +   +    F  ++ A+   T
Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDT 454

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPT 321
               LA P++T +  Q ASF  G +    T S ++         +V   + GV L   P 
Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           V     + L I+ EVS   I    G   ++  R+  TTV   SG  +VL GL+ +++Q+ 
Sbjct: 515 VNEGNAVKLTIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLINEEVQES 572

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            + +P L  IPI+G LF++S   +++  + +   P +++ 
Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKKNLMVFIKPTIIRD 612


>gi|313200821|ref|YP_004039479.1| type II and iii secretion system protein [Methylovorus sp. MP688]
 gi|312440137|gb|ADQ84243.1| type II and III secretion system protein [Methylovorus sp. MP688]
          Length = 671

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 114/262 (43%), Gaps = 17/262 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFG---GKFVSEGGDFSVK 248
            +V L++ + E+ R  L+++G  +   I+ +S  P  +  A  G      V+     +++
Sbjct: 327 PEVMLEIEVLEISRSRLQELGIAYPNQISVNSRIPVTTSTAGSGIAVTSTVATDSPLTLE 386

Query: 249 GVLDRFSF------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G+L+  S          ++  +    +  ++ P +   + + A    G +    T +S+ 
Sbjct: 387 GLLNLNSSRFDVSPNPAVNFRKTTGDVNLISNPRIRVRNNEKAKILVGDKVPIITTTSTA 446

Query: 303 G---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKA 356
               + +VT  D G+ L   P +     + ++I  EVS         N   + +   R A
Sbjct: 447 NVGISENVTYIDVGLKLDVEPRITLDDFVNIKIGLEVSSLGDRTTTRNGATVYTIGTRNA 506

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T + L  G   +LAGL++D+ ++    +P L  IPILG LF N    + +TEI +A TP
Sbjct: 507 STLLRLKDGEMQILAGLIQDEERKNASKLPALGDIPILGRLFSNQEDRKNKTEIVLAITP 566

Query: 417 FLVKPVAMRDLSRPDDHYSVED 438
            ++  +   D    +     E+
Sbjct: 567 RILGNIRRPDAEISEYWSGTEN 588


>gi|208779792|ref|ZP_03247136.1| type IV pilus secretin PilQ family protein, putative [Francisella
           novicida FTG]
 gi|208744247|gb|EDZ90547.1| type IV pilus secretin PilQ family protein, putative [Francisella
           novicida FTG]
          Length = 596

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 103/263 (39%), Gaps = 27/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236
           K+V+N ++I   DQV ++  I EV R    ++GF + +   S   +              
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390

Query: 237 --------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                          FV          V      +  + ALE  +    +A P L   + 
Sbjct: 391 GPTPGPTPTPTPVDTFVGTTAKLMYT-VAGGVQLQMEIRALESESLAEEVASPHLVVANN 449

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
           Q A    G    Y   ++S  A +V   +  + L  TP +   G I + I    +     
Sbjct: 450 QVAFIKDGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGAS 508

Query: 339 PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           P      GD+P   + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG L
Sbjct: 509 PGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYL 568

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F  ++   +++E+ I  TP +++
Sbjct: 569 FSYTKITDQDSELLIFITPKIIE 591


>gi|262191511|ref|ZP_06049695.1| type II secretory pathway component PulD [Vibrio cholerae CT
           5369-93]
 gi|262032609|gb|EEY51163.1| type II secretory pathway component PulD [Vibrio cholerae CT
           5369-93]
          Length = 559

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 104/275 (37%), Gaps = 37/275 (13%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++V   L I+ +    QV L+  I EV      Q G   S   SS+G S    +    + 
Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQD 320

Query: 239 VSEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
            S     SV                 V+   SF+ V+  +     +  L+ P +TA + Q
Sbjct: 321 SSGNPITSVLPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQ 380

Query: 284 SASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            A    G    Y T  SS          + +  +T    G+ L  TP +   G + L + 
Sbjct: 381 KAVIKVGTDEYYVTDISSVVGSGDNAQASPSIKITPFFSGISLDVTPQIDDQGNVLLHVH 440

Query: 334 TEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             V E                  +    +R++D+ +    G  +V+ GL+K +       
Sbjct: 441 PAVIEVEQQTKKILYRSEEIELPLAKSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSK 500

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 501 VPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535


>gi|253998742|ref|YP_003050805.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
 gi|253985421|gb|ACT50278.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
          Length = 675

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 114/262 (43%), Gaps = 17/262 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFG---GKFVSEGGDFSVK 248
            +V L++ + E+ R  L+++G  +   I+ +S  P  +  A  G      V+     +++
Sbjct: 331 PEVMLEIEVLEISRSRLQELGIAYPNQISVNSRIPVTTSTAGSGIAVTSTVATDSPLTLE 390

Query: 249 GVLDRFSF------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G+L+  S          ++  +    +  ++ P +   + + A    G +    T +S+ 
Sbjct: 391 GLLNLNSSRFDVSPNPAVNFRKTTGDVNLISNPRIRVRNNEKAKILVGDKVPIITTTSTA 450

Query: 303 G---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKA 356
               + +VT  D G+ L   P +     + ++I  EVS         N   + +   R A
Sbjct: 451 NVGISENVTYIDVGLKLDVEPRITLDDFVNIKIGLEVSSLGDRTTTRNGATVYTIGTRNA 510

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T + L  G   +LAGL++D+ ++    +P L  IPILG LF N    + +TEI +A TP
Sbjct: 511 STLLRLKDGEMQILAGLIQDEERKNASKLPALGDIPILGRLFSNQEDRKNKTEIVLAITP 570

Query: 417 FLVKPVAMRDLSRPDDHYSVED 438
            ++  +   D    +     E+
Sbjct: 571 RILGNIRRPDAEISEYWSGTEN 592


>gi|163781745|ref|ZP_02176745.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882965|gb|EDP76469.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1]
          Length = 663

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 114/276 (41%), Gaps = 25/276 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFA 231
           + +++ L++    QV +  TI E     L  IG +  I G   G S           SFA
Sbjct: 363 RSLISGLDVR-RKQVLIAATIVEASTKSLLDIGVRWQILGKRGGASFRGTSLSNIYSSFA 421

Query: 232 AD--FGGKFVSEGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           +     G F   G   +V      F     +   LE  +    ++ P +  +  Q A   
Sbjct: 422 SGNFLMGVFSDVGRTVTVGDATFFFPDLVLLFSLLETGSGFNIISNPRVLTLDNQPAIIK 481

Query: 289 SGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPV- 340
            G    Y        +     +    + G+ L+ TP +        IGL ++  +     
Sbjct: 482 VGQVVPYAEGVKFDINGQPIITYDYKEVGLELNVTPRISGDNLRLTIGLNLEEIIDFVTN 541

Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            IG  +  +P    R+ ++ V + +G T++L GL+     +  EG+P L +IPILG LFR
Sbjct: 542 EIGATSYTVPVTSNREVNSDVVIENGQTVILGGLVSTKTLKTMEGVPGLWRIPILGRLFR 601

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
                +++T +FI  TP++V   +  +L++  + + 
Sbjct: 602 RDVKQKDKTTLFIFITPYVV--SSPEELTKITEEHR 635


>gi|332678440|gb|AEE87569.1| Type IV pilus biogenesis protein PilQ [Francisella cf. novicida
           Fx1]
          Length = 596

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 103/263 (39%), Gaps = 27/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236
           K+V+N ++I   DQV ++  I EV R    ++GF + +   S   +              
Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390

Query: 237 --------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                          FV          V      +  + ALE  +    +A P L   + 
Sbjct: 391 TPTPTPTPTPTPVDTFVGTTAKLMYT-VAGGVQLQMEIRALESESLAEEVASPHLVVANN 449

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
           Q A    G    Y   ++S  A +V   +  + L  TP +   G I + I    +     
Sbjct: 450 QVAFIKDGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGAS 508

Query: 339 PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           P      GD+P   + R+  T V    G T+V+ G+ +   ++ +  IP L  IP LG L
Sbjct: 509 PGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYL 568

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F  ++   +++E+ I  TP +++
Sbjct: 569 FSYTKITDQDSELLIFITPKIIE 591


>gi|283781400|ref|YP_003372155.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283439853|gb|ADB18295.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 854

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 128/326 (39%), Gaps = 21/326 (6%)

Query: 150 MVRTIQDSQR-AVELSETFLSQSGRNQYANSSSKKVMNLLNIA------GEDQVTLKVTI 202
            V +  +      ++       +G +       + V+  L+           QV ++  I
Sbjct: 289 TVSSPSEIDIPGDQVKTGGNGFAGADVVIVRDYENVIKQLDQVFIEIDVKPRQVLIEAMI 348

Query: 203 AEVRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
             VR      +G         +     S S   D     +SEGG   +K      S    
Sbjct: 349 LSVRLSDNMTMGVNFEALRDKNNVRLVSGSPLTDLANIDLSEGG---LKLGFLDASLAVF 405

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLH 317
           + ALE       +A P L  ++ Q A    G Q  Y   TV+ ++   SV   D G +L 
Sbjct: 406 IDALETVGDTNVIASPRLMCLNKQRAEIQIGEQLGYVSTTVTENSATQSVNFLDVGTLLR 465

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P + + G I L +  E+S   + +  G  +P+  V +  T V    G T++L GL++ 
Sbjct: 466 LRPNIANDGLIRLEVHPELSTGTVSIEQGLTIPNKTVTQVTTNVMCADGCTVILGGLIRQ 525

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRP----D 431
           D+      IP L  +P++G  FR     +E TEI +  TP +V +P+   +  +      
Sbjct: 526 DLTNNTSQIPFLGSLPLVGPAFRQKTETQERTEIIVLLTPRIVSEPMLGEEGRKYGNSFT 585

Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEA 457
           +H SV  D  + F  R    Y  ++A
Sbjct: 586 EHQSVYADKMSPFGKRSTGQYHLRKA 611


>gi|229512666|ref|ZP_04402135.1| MSHA biogenesis protein MshL [Vibrio cholerae TMA 21]
 gi|229350343|gb|EEO15294.1| MSHA biogenesis protein MshL [Vibrio cholerae TMA 21]
          Length = 559

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 104/275 (37%), Gaps = 37/275 (13%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++V   L I+ +    QV L+  I EV      Q G   S   SS+G S    +    + 
Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQD 320

Query: 239 VSEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
            S     SV                 V+   SF+ V+  +     +  L+ P +TA + Q
Sbjct: 321 SSGNPITSVLPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQ 380

Query: 284 SASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            A    G    Y T  SS          + +  +T    G+ L  TP +   G + L + 
Sbjct: 381 KAVIKVGTDEYYVTDISSVVGSGDNAQASPSIKITPFFSGISLDVTPQIDDQGNVLLHVH 440

Query: 334 TEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             V E                  +    +R++D+ +    G  +V+ GL+K +       
Sbjct: 441 PAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSK 500

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 501 VPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535


>gi|127511323|ref|YP_001092520.1| pilus (MSHA type) biogenesis protein MshL [Shewanella loihica PV-4]
 gi|126636618|gb|ABO22261.1| pilus (MSHA type) biogenesis protein MshL [Shewanella loihica PV-4]
          Length = 563

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 107/251 (42%), Gaps = 24/251 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV- 250
           + QV L+  + EV      Q G    S+ G S   S  F        + +    ++ G+ 
Sbjct: 287 QRQVILEAKVLEVTLSDGYQQGIHWESVLGQSGNNSIEFGTSPAPDGLGDVITSAIGGIT 346

Query: 251 ---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GA 304
              +    F T+++ L+    +  L+ P +TA + Q A    G    + T  SST   G 
Sbjct: 347 SLQIKGKDFSTMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGRDEYFVTDVSSTTVAGT 406

Query: 305 TSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP- 349
           T VTT +        G+ L  TP +   G + L I   V           +  +  ++P 
Sbjct: 407 TPVTTPEVELTPFFSGIALDVTPQIDEEGSVLLHIHPSVIDIKEQNKSIKVSDSTLELPL 466

Query: 350 -SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
               +R++DT ++  +G  +V+ GL+K +  +L   +PLL  IP LG  F N   +  +T
Sbjct: 467 AQSEIRESDTVIKANTGDVVVIGGLMKSENIELISKVPLLGDIPFLGEAFTNRSNSLRKT 526

Query: 409 EIFIAATPFLV 419
           E+ I   P +V
Sbjct: 527 ELVILLKPTVV 537


>gi|261344685|ref|ZP_05972329.1| protein transport protein HofQ [Providencia rustigianii DSM 4541]
 gi|282567605|gb|EFB73140.1| protein transport protein HofQ [Providencia rustigianii DSM 4541]
          Length = 346

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 65/337 (19%), Positives = 138/337 (40%), Gaps = 26/337 (7%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G+    + +L + DI  L     + I       E +S+ +     V      Q
Sbjct: 18  MMSYAERGRDPF-IALLPDEDIPLLAEHTPKIIPVE----EPLSEKIFPLISVDAQLVYQ 72

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIA-------------GEDQVTLKVTIAEV 205
           + ++     LS+ G+  +  +++  ++                    + QV +   I   
Sbjct: 73  QIIQTDLKLLSEKGQASFDTTTNSLIITESKPRMALITEWLKQKDIPQQQVQITAHIVSS 132

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALE 264
            R  L+ +G +  + G  +        +   ++ +E G  ++  + L     E  L ALE
Sbjct: 133 TRTALQALGLEWGMLGEMATNPHHSRYN---RYNTEPGKVALNILKLGDGLLEMKLSALE 189

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           +A  +  +A P L A   + AS   G +  Y T  ++   + V   D  + +  TPT+  
Sbjct: 190 KANLLSIIASPRLVASHQKPASIQQGTEIPYVT--NTDKKSHVQFKDAVLGMEVTPTISR 247

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             ++ + ++   + P   +        S   ++  T+V + +  T++L G+ +   ++ +
Sbjct: 248 DNKVEMVLKISHNSPDTAITTSQNHHLSINKQEIATSVTIKNNDTLILGGIFQQKQEKTE 307

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            GIP LS++P+LG LF NS  + +   + +  TP L+
Sbjct: 308 AGIPFLSQLPLLGNLFTNSFQHIDRRVLIVFITPKLI 344


>gi|149195014|ref|ZP_01872107.1| type II and III secretion system protein:NolW-like protein
           [Caminibacter mediatlanticus TB-2]
 gi|149134935|gb|EDM23418.1| type II and III secretion system protein:NolW-like protein
           [Caminibacter mediatlanticus TB-2]
          Length = 579

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 121/246 (49%), Gaps = 9/246 (3%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGKFV 239
           K ++N L+   ++QV +K  I E+      QIG +  +   S   S   + +A+ GG  +
Sbjct: 301 KTIINALDTP-KEQVYVKARILEISNTKAAQIGNRLGLYAGSGTTSGLYTLSANLGGPAI 359

Query: 240 S---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295
           +        ++  +    +    L  LE   A + L+EP++  I+   ++   G      
Sbjct: 360 AFDVASLGLTIPTIKQGIALGATLDLLETYGAAKKLSEPSILCINNTPSTIYVGKTVSVL 419

Query: 296 -KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
               +S+T + S T  D G+ L   P + S  ++ L +   + + + G +  +MP    R
Sbjct: 420 TGKTTSTTTSESYTRQDIGLTLKVKPRIDSDNKVALNVDAVIEDLLPG-SPVNMPITSKR 478

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             +TT  + +G +I++ GL++D+       +PLL  IPILGALFR+ + N+++T + I  
Sbjct: 479 TINTTTIVRNGQSIIIGGLVRDNKDITLNKVPLLGDIPILGALFRHKQINKDKTTLVIVL 538

Query: 415 TPFLVK 420
           TP++VK
Sbjct: 539 TPYIVK 544


>gi|258627001|ref|ZP_05721799.1| MSHA biogenesis protein MshL [Vibrio mimicus VM603]
 gi|262172506|ref|ZP_06040184.1| MSHA biogenesis protein MshL [Vibrio mimicus MB-451]
 gi|258580675|gb|EEW05626.1| MSHA biogenesis protein MshL [Vibrio mimicus VM603]
 gi|261893582|gb|EEY39568.1| MSHA biogenesis protein MshL [Vibrio mimicus MB-451]
          Length = 558

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 111/277 (40%), Gaps = 41/277 (14%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233
           ++V   L I+ +    QV L+  I EV      Q G   +   +S+G      S + + D
Sbjct: 260 RQVTEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGSGTISQD 319

Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             G  +S             GG  ++  V+   SF+ V+  +     +  L+ P +TA +
Sbjct: 320 SSGNPISAVLPGLDAIGTLLGGQSNL--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 377

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331
            Q A    G    Y T  SS   T          ++T    G+ L  TP +   G + L 
Sbjct: 378 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 437

Query: 332 IQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +   V                 ++P  R  +R++D+ +    G  +V+ GL+K +     
Sbjct: 438 VHPAVIEVEQQTKRITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 497

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 498 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 534


>gi|90416464|ref|ZP_01224395.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2207]
 gi|90331663|gb|EAS46891.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2207]
          Length = 754

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 4/197 (2%)

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G   S A D G    +  G FS+  + D F  +  L ALE       +++P +     Q 
Sbjct: 557 GLGDSLAVDLG--VDNPTGSFSLGYLTDNFLIDLELSALESDGFGEIVSQPKVLTGDKQQ 614

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A   SG +  Y+  +SS GATS+   +  + L  TP +    RI + +            
Sbjct: 615 AVIKSGTEIAYQKATSS-GATSIEFKEAVLQLEVTPQITPDNRIIMDLLVSQDSVGAFTP 673

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            G+ PS  + + +T   + +G T+VL G+ + +     + +PLL  +P LG LFRN   N
Sbjct: 674 TGE-PSIDITQIETQALVGNGQTLVLEGIFQTEEVNGTDKVPLLGDLPFLGKLFRNDLRN 732

Query: 405 REETEIFIAATPFLVKP 421
            E+ EI    TP ++  
Sbjct: 733 IEKREILSFITPKIIDD 749


>gi|307634685|gb|ADI83160.2| type II secretion system lipoprotein GspD, putative [Geobacter
           sulfurreducens KN400]
          Length = 632

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 12/249 (4%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKFV 239
           +V+  L+     QV ++  IAEV  D LK +G Q       +    S  A    F     
Sbjct: 349 QVIQKLDKR-RRQVFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLDPFNFLSA 407

Query: 240 SEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           + G  F +   L+      S    + AL    AI  L+ P +     + A    G    +
Sbjct: 408 TSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPF 467

Query: 296 KTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
            + ++ T       S+   D G+ L  TP +     + L I  E+S         +    
Sbjct: 468 LSQTNLTTGGISQQSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVT 527

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R A T V +    T+V+ GL++D   +    IPLL  IP+LG LF+     RE+T + 
Sbjct: 528 TKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKSTRREKTNLM 587

Query: 412 IAATPFLVK 420
           I  TP +++
Sbjct: 588 IVLTPRIIR 596


>gi|90580158|ref|ZP_01235965.1| MSHA biogenesis protein MshL [Vibrio angustum S14]
 gi|90438460|gb|EAS63644.1| MSHA biogenesis protein MshL [Vibrio angustum S14]
          Length = 548

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 117/306 (38%), Gaps = 33/306 (10%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           V+ GM+ +  D +  +   +  L             K+ + +     + QV L+  I EV
Sbjct: 220 VVSGMIGS-GDGRNVMVSPQAGLISVRAFPNELREVKEFLGMSQRRLKRQVVLEAKIMEV 278

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDR 253
             +   Q G   +   SS G +     +             GG  +SE         +  
Sbjct: 279 TLNDSYQQGIDWNNLTSSIGGTGIIVNEMKDAANAAASILPGGNAISELLGGQTNIKITD 338

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------- 305
            +F  V+  L     +  L+ P +TA + Q A    GG   + T  SS+  +        
Sbjct: 339 GNFSAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNNVSP 398

Query: 306 --SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS----------YRV 353
             S+T    G+ L  TP +   G + L +   V +        ++ +            +
Sbjct: 399 DVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVQNEQKTIEVGTAKPMVLPLAKSTI 458

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R++D+ +   +G  +V+ GL+K  I      +P L  IP +G LFR+    +++TE+ I 
Sbjct: 459 RESDSIIHARTGDVVVIGGLMKSSINDQVSKVPFLGDIPGIGNLFRHINKVKKKTELVIL 518

Query: 414 ATPFLV 419
             P +V
Sbjct: 519 LKPTVV 524


>gi|39995438|ref|NP_951389.1| general secretion pathway protein D [Geobacter sulfurreducens PCA]
 gi|39982201|gb|AAR33662.1| general secretion pathway protein D, putative [Geobacter
           sulfurreducens PCA]
          Length = 632

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 12/249 (4%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKFV 239
           +V+  L+     QV ++  IAEV  D LK +G Q       +    S  A    F     
Sbjct: 349 QVIQKLDKR-RRQVFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLDPFNFLSA 407

Query: 240 SEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           + G  F +   L+      S    + AL    AI  L+ P +     + A    G    +
Sbjct: 408 TSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPF 467

Query: 296 KTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
            + ++ T       S+   D G+ L  TP +     + L I  E+S         +    
Sbjct: 468 LSQTNLTTGGISQQSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVT 527

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R A T V +    T+V+ GL++D   +    IPLL  IP+LG LF+     RE+T + 
Sbjct: 528 TKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKSTRREKTNLM 587

Query: 412 IAATPFLVK 420
           I  TP +++
Sbjct: 588 IVLTPRIIR 596


>gi|77361610|ref|YP_341185.1| mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus
           type IV) [Pseudoalteromonas haloplanktis TAC125]
 gi|76876521|emb|CAI87743.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshL (pilus type IV) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 552

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 21/254 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGV 250
           + QV L+  I E+      Q G       S  G S SFA   G  G  +S          
Sbjct: 283 QRQVILEAKIIEITLKDEYQQGVNWERISSGLGSSISFATTAGNFGNNLSASLGGVSSLT 342

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----------VSS 300
           ++R  F  V++ LE    ++ L+ P +TA + Q A    G    + T           ++
Sbjct: 343 IERGDFNGVINLLETQGDVQMLSNPRVTATNNQKAVIKVGQDEYFVTNVSSTTVTGTSTT 402

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSY 351
           ++    +T    G+ L  TP +   G + L +   V+E    +    +            
Sbjct: 403 TSPEIDLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETQEQLKVITLDDQRFELPLAQS 462

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
            +R++DT +   SG  +V+ GL++   Q  +   P+L  IPI G LF+N R  +E+ E+ 
Sbjct: 463 NIRESDTVIRAQSGEIVVIGGLMQTSTQDEETKTPILGDIPIFGNLFKNIRKRQEKKELI 522

Query: 412 IAATPFLVKPVAMR 425
           I   P +V P   +
Sbjct: 523 ILIRPTVVMPDTWK 536


>gi|51556732|gb|AAU06138.1| MshL [Pseudoalteromonas tunicata]
          Length = 563

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 105/264 (39%), Gaps = 23/264 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADF 234
           ++ K+ + L   + + QV L+  I EV      Q G          GS+     + A+  
Sbjct: 278 AAMKEFLRLGEESLQRQVILEAKIIEVTLKDDYQQGVNWKEVLGHIGSTDLTFATTASGQ 337

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
            G  ++ G       V     F  V+  L     ++ L+ P +TA + Q A    G    
Sbjct: 338 IGNTITAGIGGVSSLVFKNADFSGVVSLLSTQGDVQMLSNPRVTATNNQKAVIKVGQDEY 397

Query: 295 YKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           + T  SST             S+T    G+ L  TP +   G + L +   V+E      
Sbjct: 398 FVTEVSSTTVTGNATTTTPEISLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETAEQRK 457

Query: 345 AGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
              +             +R++DT +   SG  +V+ GL++      +   PLL  +P+LG
Sbjct: 458 VITLNNEEFVLPLAQSNIRESDTVIRAGSGEIVVIGGLMQTVTTDEESKTPLLGDMPVLG 517

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LF++ R  +++ E+ I   P +V
Sbjct: 518 HLFKSVRKRQDKKELIILIKPTVV 541


>gi|325922269|ref|ZP_08184050.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325547222|gb|EGD18295.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 620

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 108/272 (39%), Gaps = 34/272 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------- 221
           +++++ ++    DQV ++  I        + +G +  I G                    
Sbjct: 344 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIAGRRQYGDNTGVISGSTANNVS 402

Query: 222 ------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                  +     +F    G    S  G  +   +   F+ +  L A++       ++ P
Sbjct: 403 IINDGLHNVPAGLNFNLPAGTFTTSTAGSIAYTLLGRNFALDMELSAMQEEGRGEVVSNP 462

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            +   + +      G +  Y T+++++G      +V   +  + L  TPT+ +  R+ L 
Sbjct: 463 RIVTANQREGVIKQGREIGYVTITAASGGGQSQANVQFKEVLLELKVTPTITNDNRVFLN 522

Query: 332 IQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           +  +  E    +     G +P    R+ +T V +  G T+V+ G+ +   ++    +P L
Sbjct: 523 MNVKKDEVARFIVLDGYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESVSKVPFL 582

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 583 GDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 614


>gi|88858661|ref|ZP_01133302.1| MSHA biogenesis protein MshL [Pseudoalteromonas tunicata D2]
 gi|88818887|gb|EAR28701.1| MSHA biogenesis protein MshL [Pseudoalteromonas tunicata D2]
          Length = 563

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 105/264 (39%), Gaps = 23/264 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADF 234
           ++ K+ + L   + + QV L+  I EV      Q G          GS+     + A+  
Sbjct: 278 AAMKEFLRLSEESLQRQVILEAKIIEVTLKDDYQQGVNWKEVLGHIGSTDLTFATTASGQ 337

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
            G  ++ G       V     F  V+  L     ++ L+ P +TA + Q A    G    
Sbjct: 338 IGNTITAGIGGVSSLVFKNADFSGVVSLLSTQGDVQMLSNPRVTATNNQKAVIKVGQDEY 397

Query: 295 YKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           + T  SST             S+T    G+ L  TP +   G + L +   V+E      
Sbjct: 398 FVTEVSSTTVTGNATTTTPEISLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETAEQRK 457

Query: 345 AGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
              +             +R++DT +   SG  +V+ GL++      +   PLL  +P+LG
Sbjct: 458 VITLNNEEFVLPLAQSNIRESDTVIRAGSGEIVVIGGLMQTVTTDEESKTPLLGDMPVLG 517

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LF++ R  +++ E+ I   P +V
Sbjct: 518 HLFKSVRKRQDKKELIILIKPTVV 541


>gi|791156|gb|AAA65694.1| mannose-sensitive hemagglutinin D [Vibrio cholerae]
          Length = 559

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 107/277 (38%), Gaps = 41/277 (14%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233
           ++V   L I+ +    QV  +  I EV      Q G   S   SS+G      S S   D
Sbjct: 261 RQVNEFLGISQQRMHRQVISEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQD 320

Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             G  ++             GG  +V  V+   SF+ V+  +     +  L+ P +TA +
Sbjct: 321 SNGNPITSVLPGLDAIGNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 378

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331
            Q A    G    Y T  SS   T          ++T    G+ L  TP +   G + L 
Sbjct: 379 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 438

Query: 332 IQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +   V E                  +    +R++D+ +    G  +V+ GL+K +     
Sbjct: 439 VHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 498

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 499 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535


>gi|269213782|ref|ZP_06158175.1| type IV pilus secretin PilQ [Neisseria cinerea ATCC 14685]
 gi|269145356|gb|EEZ71774.1| type IV pilus secretin PilQ [Neisseria cinerea ATCC 14685]
          Length = 327

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 108/270 (40%), Gaps = 32/270 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236
           +K+++ L++    QV ++  I E      + +G +    G+    +  F +  GG     
Sbjct: 51  RKLIDELDVP-AQQVMIEARIVEATDGFARDLGVKFGYGGTERQTAWGFNSGSGGISAAN 109

Query: 237 -----------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
                                     +     ++   L   +    L A E+ +  +TLA
Sbjct: 110 NGGTGGNIGTSSGRWSVNTNINLPVAAAANSIALVRALSSGALNLELSASEQLSKTKTLA 169

Query: 274 EPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            P +   + Q A   SG +  Y+  + S +   T+ T     + L  TP +   G+I + 
Sbjct: 170 NPRVLTQNRQEAKIESGTEIPYQDTSTSGNNTTTTTTFKKAVLGLVVTPNITPDGQIIMN 229

Query: 332 IQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           ++     P+   V        + +  DT   + +GGT+++ G+ +++       IPLL  
Sbjct: 230 VKINKDTPIDCRVKNEATKCIQTKNLDTQAMVENGGTLIVGGIYEEENGNTLTKIPLLGD 289

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP++G LF+  + N+   E+ I  TP ++ 
Sbjct: 290 IPVIGNLFKTRQNNQSRRELLIFITPRIMD 319


>gi|307579783|gb|ADN63752.1| general secretion pathway protein D [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 721

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 137/344 (39%), Gaps = 47/344 (13%)

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
           + +V LH    T+  S  AVE   T L ++    +   S + V+  L++    QV ++  
Sbjct: 382 NGSVTLHVQGDTVGVS--AVEEINTLLVRATPQAW--KSIRDVIEKLDVM-PMQVHIEAQ 436

Query: 202 IAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKFVSEG-----GD 244
           +AEV        G       S            S+G      A         G     G 
Sbjct: 437 VAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAARSGWKSIAGK 496

Query: 245 FSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            +  G+   F   +   +++AL++ T +R L  P++   +   A+   G +    + S +
Sbjct: 497 VTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGARIPINSTSIN 556

Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGV 343
           TG       +SV   D GV+L   P V   G + L I  EVS P             +  
Sbjct: 557 TGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGSLPAACSSASSTLVN 616

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +A        R+  T   + SG TI+LAGL+  +  +   G+P LSK+PI+G LF     
Sbjct: 617 SAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQ 676

Query: 404 NREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFN 446
           N    EI +  TP +V+ P   R+L    D YS + +A      
Sbjct: 677 NNNRREIIVLLTPEIVRNPQEARNL---TDEYSQKFNAMEPLPG 717


>gi|28198648|ref|NP_778962.1| general secretory pathway protein D precursor [Xylella fastidiosa
           Temecula1]
 gi|182681332|ref|YP_001829492.1| general secretion pathway protein D [Xylella fastidiosa M23]
 gi|28056739|gb|AAO28611.1| general secretory pathway protein D precursor [Xylella fastidiosa
           Temecula1]
 gi|182631442|gb|ACB92218.1| general secretion pathway protein D [Xylella fastidiosa M23]
          Length = 775

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 137/344 (39%), Gaps = 47/344 (13%)

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
           + +V LH    T+  S  AVE   T L ++    +   S + V+  L++    QV ++  
Sbjct: 436 NGSVTLHVQGDTVGVS--AVEEINTLLVRATPQAW--KSIRDVIEKLDVM-PMQVHIEAQ 490

Query: 202 IAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKFVSEG-----GD 244
           +AEV        G       S            S+G      A         G     G 
Sbjct: 491 VAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAARSGWKSIAGK 550

Query: 245 FSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            +  G+   F   +   +++AL++ T +R L  P++   +   A+   G +    + S +
Sbjct: 551 VTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGARIPINSTSIN 610

Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGV 343
           TG       +SV   D GV+L   P V   G + L I  EVS P             +  
Sbjct: 611 TGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGSLPAACSSASSTLVN 670

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +A        R+  T   + SG TI+LAGL+  +  +   G+P LSK+PI+G LF     
Sbjct: 671 SAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQ 730

Query: 404 NREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFN 446
           N    EI +  TP +V+ P   R+L    D YS + +A      
Sbjct: 731 NNNRREIIVLLTPEIVRNPQEARNL---TDEYSQKFNAMEPLPG 771


>gi|297570326|ref|YP_003691670.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926241|gb|ADH87051.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 514

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 100/245 (40%), Gaps = 13/245 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKFVSEGGDFSV-- 247
             QV ++  I E  +++ +++G Q              A  F    G  + E     V  
Sbjct: 259 TPQVLIEAHIIETNQEVARELGVQWGSFWRGQQRVSDAAGGFTYQAGNPIGEQYSLDVLT 318

Query: 248 ------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                    +     E  L AL+R   +  L+ P++  +    A   SG +  Y+++   
Sbjct: 319 GEVGFYTASVAGNILEMQLQALQREGKVNILSRPSVATLDNHEAVLESGTEVPYQSI--E 376

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            G TSV   D  + L  TP V+S   I L+I+ +  E  +       P    + A T + 
Sbjct: 377 DGTTSVQYKDAVLRLLVTPQVISRENIKLKIEAQKDEVDLTRTVMGNPFIIKKLAQTNLI 436

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G T+V+AGL K+       G+PLL  IP LG  FR+     E  E+ I  TP ++  
Sbjct: 437 VEDGSTVVIAGLAKERQASSSTGVPLLKNIPGLGVFFRSDARAGEFEELLIFITPRILSA 496

Query: 422 VAMRD 426
             + +
Sbjct: 497 DNLEN 501


>gi|313682348|ref|YP_004060086.1| type ii and iii secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155208|gb|ADR33886.1| type II and III secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
          Length = 535

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 116/284 (40%), Gaps = 18/284 (6%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-----------GGKFVS 240
              QV ++  I E+     K++G ++ ++G + G +  F  +                V+
Sbjct: 255 DRQQVYVRAKIIEISEGKSKEVGIKYGLSGGTVGSNGVFTFNTMLGDGTAAAVALDPSVT 314

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
               F +  +    +    +  L    A   L+EP++  I    +S   G      +  +
Sbjct: 315 TALKFDIPTITSGIALGANIALLNTNGAAEILSEPSILCIDNLESSIYVGKTESISSGVT 374

Query: 301 STGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
               T +T      D G+ L   P + +  ++ L +  ++ +     N   +PS   R+ 
Sbjct: 375 QGVGTGITQNFTRQDIGLTLKIKPRLSNDNKVLLGVNAKLEDIDSNTNL-QLPSTTKREV 433

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T+  + +G T+++ GL+++        +P L  IP+LG LFR+     ++  + I  TP
Sbjct: 434 ITSAIVNNGETVIIGGLIREKTDHNDNRVPFLGDIPVLGHLFRDESSKTDKINLVILLTP 493

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
           ++++     DLS      +  D  +A + +R+ +    K+ S  
Sbjct: 494 YIIE--KSGDLSSLRAQLNQLDAIQARYVDRITQSLESKKKSNP 535


>gi|146307949|ref|YP_001188414.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
 gi|145576150|gb|ABP85682.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
          Length = 645

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 118/271 (43%), Gaps = 28/271 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------TGS 222
           ++ + ++  L++    QV ++  I EV  DI   +G Q ++                TG 
Sbjct: 330 ATLEDIVRQLDVP-RAQVMVEAAIVEVSGDITDAVGVQWAVDARGNTGGLGGVNFGGTGL 388

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           S G              +   D ++ G+     F  ++ AL   +    L+ P+L  +  
Sbjct: 389 SVGTVLQILQSGEIPENTTLPDGAIIGIGSD-RFGALITALSANSKSNLLSTPSLLTLDN 447

Query: 283 QSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           Q A    G    ++T S +T A       T++   D GV L  TP++     + L I+ E
Sbjct: 448 QKAEILVGQNVPFQTGSYTTDASGAGNPFTTIERKDIGVTLKVTPSINEGATLRLEIEQE 507

Query: 336 VSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           +S   P  G+NA  +      R   +T+    G  IVL GL++DD+ Q    +PLL  IP
Sbjct: 508 ISSIAPSTGLNAQAVDLVTNKRSIKSTILADDGQVIVLGGLIQDDVTQSISKVPLLGDIP 567

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           ++G LFR++R +  +  + +   P +V+  A
Sbjct: 568 LIGGLFRSTRDSHVKRNLMVFLRPTVVRDGA 598


>gi|258623356|ref|ZP_05718360.1| MSHA biogenesis protein MshL [Vibrio mimicus VM573]
 gi|258584322|gb|EEW09067.1| MSHA biogenesis protein MshL [Vibrio mimicus VM573]
          Length = 554

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 111/277 (40%), Gaps = 41/277 (14%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233
           ++V   L I+ +    QV L+  I EV      Q G   +   +S+G      + + + D
Sbjct: 256 RQVTEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISQD 315

Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             G  +S             GG  ++  V+   SF+ V+  +     +  L+ P +TA +
Sbjct: 316 SSGNPISAVLPGLDAIGTLLGGQSNL--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 373

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331
            Q A    G    Y T  SS   T          ++T    G+ L  TP +   G + L 
Sbjct: 374 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 433

Query: 332 IQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +   V                 ++P  R  +R++D+ +    G  +V+ GL+K +     
Sbjct: 434 VHPAVIEVEQQTKRITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 493

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 494 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 530


>gi|303248827|ref|ZP_07335077.1| general secretion pathway protein D [Desulfovibrio fructosovorans
           JJ]
 gi|302489768|gb|EFL49699.1| general secretion pathway protein D [Desulfovibrio fructosovorans
           JJ]
          Length = 695

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 116/316 (36%), Gaps = 46/316 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--SSSGPSKSFAADFGG--- 236
            +++  L+      V ++  I EV  D     G      G  ++ G +K     +GG   
Sbjct: 353 DEIIAQLD-RPRRGVFVEALIMEVSTDKSVTFGVNWVAGGRVNAVGDNKKGGLVYGGFES 411

Query: 237 --------KFVSEGGDFSVK--------GVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                     ++  G  SV         G     + + ++   +       L+ P L  +
Sbjct: 412 SSTSVGTQNSLTLPGGLSVGMLTFPVKIGDFVYSNIQALISDGKSNNTFNILSTPQLMTL 471

Query: 281 SGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
             + AS T      Y T + S               D G  L  TP +     I L+I  
Sbjct: 472 DNEEASITVAENRPYLTATDSGQNKQDRTYQQFDYKDVGTKLKITPHIGQSDSIRLKILQ 531

Query: 335 EVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           EVS              P+ R R   TTV++  G TIV++GL+    Q     +P +S I
Sbjct: 532 EVSRVDKAETLDTGSLQPTTRKRATQTTVQVKDGQTIVISGLMGVSDQDSFSNVPGISDI 591

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P+LG LF++    RE+T +++  TP +V+                   A A    + + +
Sbjct: 592 PVLGWLFKHKSKTREKTNLYVFITPRIVQ---------------SPAQAAAIHQEKASAL 636

Query: 452 YGPKEASEVEGQNYKG 467
               EAS+VE    +G
Sbjct: 637 SHAIEASQVEEPRTEG 652


>gi|297581573|ref|ZP_06943496.1| general secretion pathway protein D [Vibrio cholerae RC385]
 gi|297534411|gb|EFH73249.1| general secretion pathway protein D [Vibrio cholerae RC385]
          Length = 674

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 137/374 (36%), Gaps = 71/374 (18%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181
           +   L+R I   ++ +    +  V++      +D    ++ +SE   ++ G  Q   S  
Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKR 304

Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216
            +VM       N L +                      QV ++  I E+       +G Q
Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364

Query: 217 HSI-----------TGSSSGP----------------------------SKSFAADFGGK 237
                         TG+S G                             + +   D+   
Sbjct: 365 WGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTETKAVYDTDNNFLRNETTTTKGDYSTL 424

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +  G       +    +  +++A+   ++   L+ P++T +    ASF  G +    T
Sbjct: 425 ASALSGIQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVIT 484

Query: 298 VSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
            SS+         +V   + G+ L   P +     + L+I+ EVS  V+G N      + 
Sbjct: 485 GSSAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSN-VLGANGAVDVRFA 543

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + +
Sbjct: 544 KRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV 603

Query: 413 AATPFLVKPVAMRD 426
              P +++     D
Sbjct: 604 FIKPTIIRDGMTAD 617


>gi|294101775|ref|YP_003553633.1| type II and III secretion system protein [Aminobacterium
           colombiense DSM 12261]
 gi|293616755|gb|ADE56909.1| type II and III secretion system protein [Aminobacterium
           colombiense DSM 12261]
          Length = 556

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 61/291 (20%), Positives = 118/291 (40%), Gaps = 30/291 (10%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV------MNLLNIAGEDQVTLKVTIAE 204
             T +  ++A  + +    +     Y  +  +++      + L++  G+ QV ++  I E
Sbjct: 270 ASTAKMVKQATGVQKIVEDERLNTLYVTADREQLLKVERYVELIDRPGK-QVMIEARIVE 328

Query: 205 VRR-----------DILKQIGFQHSITGSSS--GPSKSFAADFGGKFVSEGGDFSVKGVL 251
           +              I K    ++   G+    G S S++    G+ ++     S+ G +
Sbjct: 329 IADRASHEVASCLESIYKHWMLEYKGRGTPGRIGYSDSYSEGMFGEDIT-----SLSGTV 383

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
            +   + ++  LE+      LAEP++  I G  A      ++ Y +     G  +  + +
Sbjct: 384 KK--LDALISTLEKEEKGHILAEPSVITIEGTKARIQLVQKYPYVSTRDEAGNPTYVSEE 441

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSGGTI 368
            G  L  TP V     I +++  +  E V    G      P    R+ +T V +  G   
Sbjct: 442 VGPQLEITPFVGRDEIITIKLVIKTGEVVSWREGARGETYPETSTRQVETQVRVRDGEPF 501

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V+ GL K+  +  +   PLL  IPILG+LF      +E+ E+ I   P ++
Sbjct: 502 VIGGLFKELKRGNQYKFPLLGDIPILGSLFSTQYTEKEKNEVIIIVIPHIL 552


>gi|115380040|ref|ZP_01467087.1| general secretion pathway protein D [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820456|ref|YP_003952814.1| general secretion pathway protein D [Stigmatella aurantiaca
           DW4/3-1]
 gi|115362957|gb|EAU62145.1| general secretion pathway protein D [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393528|gb|ADO70987.1| General secretion pathway protein D [Stigmatella aurantiaca
           DW4/3-1]
          Length = 850

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 80/466 (17%), Positives = 155/466 (33%), Gaps = 79/466 (16%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           +  F  NP+   +PP   +  +      V + +        NK+II+  P     +    
Sbjct: 270 VGGFGGNPTPGGMPPPDMSQGSGDTGGPVTLSQIIPDERT-NKLIIVASPGAFDRIQ--- 325

Query: 74  PTKA---DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
                  D+   S   + ++              D +++ +    + +  A+      + 
Sbjct: 326 -EIVREVDIPTDSGGRINVYPLE---------NADSEELASTLQTLAQGTANRPRNPAQQ 375

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
                 R        +  G V+    + +A        SQ+           +V+  L+I
Sbjct: 376 QPPGVPRQNAAVAAELFSGEVK--VSADKATNSLVIVASQADFKNIV-----RVIEKLDI 428

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--------VSEG 242
               QV ++  I EV  D   + G              +     G K+        +S G
Sbjct: 429 P-RRQVFVEAVIMEVNLDRNSEFGINLHSGYKLDTSDGAATGIVGTKYTKQGAPPSLSLG 487

Query: 243 GDFSVKGVLDRFS----------------FETVLHALERATAIRTLAEPTLTAISGQSAS 286
              ++ G L                    F  VLHAL++ + +  L+ P L     + A 
Sbjct: 488 SLVNLGGFLAGLQGPVIPELKNLGIDVPAFGVVLHALQQNSDVNVLSTPHLLTSDNEEAE 547

Query: 287 FTSGGQHLYKTVSS-----------------------------STGATSVTTHDYGVVLH 317
            T G    ++   S                              +    +T  +  + L 
Sbjct: 548 ITVGQNVPFQAGFSPGSLGGTIGGIGGVTGGTNTGLSSALLGLGSSFAPITRQNVELKLT 607

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P +     I + I TE +E +   +    P+   R A TTV      T+V+ G+++D 
Sbjct: 608 VKPQINESDFIRMVI-TEQTEEIASSDPVLGPTTSKRSAKTTVVAKDQETVVIGGIMQDR 666

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
             +    +P+L  IP+LG LFR +   + +T + +  TP++++  +
Sbjct: 667 TIESVSKVPILGDIPLLGHLFRETTRRKTKTNLLLFLTPYIIRNQS 712


>gi|254282305|ref|ZP_04957273.1| general (Type II) secretion pathway (GSP) D protein [gamma
           proteobacterium NOR51-B]
 gi|219678508|gb|EED34857.1| general (Type II) secretion pathway (GSP) D protein [gamma
           proteobacterium NOR51-B]
          Length = 346

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------- 243
               QV ++ +I EV        G + +  G   G   +          + G        
Sbjct: 77  TPPTQVMIEASIIEVTLTDELSYGLEWTFNGQLGGSEYNGVGTLSDGNFNLGSPDSPLGQ 136

Query: 244 ---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
               FS            VL AL   + I  ++ P++  +   +A    G Q   ++ S+
Sbjct: 137 LARGFSYSVTGGSGDIVAVLQALSTQSLINVISSPSVMVLDNNTAYIHVGDQVPIRSGST 196

Query: 301 STG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
            +       ++T  D GV L   P+V + G + L ++  V+  V  ++      +  R+ 
Sbjct: 197 VSNGGNVTENITYRDTGVKLSVRPSVNAGGLVTLDVEQSVT-DVGPIDVTGNRRFLEREI 255

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            + V + SG ++VL GL++++    +EG+P L K+P++GALF  +  +   TE+ +  TP
Sbjct: 256 MSRVAVRSGESVVLGGLIRENATNSEEGVPWLHKVPLIGALFGTTDKSDTRTELVVMITP 315

Query: 417 F 417
            
Sbjct: 316 R 316


>gi|157963580|ref|YP_001503614.1| pilus (MSHA type) biogenesis protein MshL [Shewanella pealeana ATCC
           700345]
 gi|157848580|gb|ABV89079.1| pilus (MSHA type) biogenesis protein MshL [Shewanella pealeana ATCC
           700345]
          Length = 556

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 23/250 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFG---GKFVSEGGDFSVK 248
           + QV L+  + EV      Q G    S+ G +     SF        G  ++        
Sbjct: 283 QRQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDISFGTSPAAGLGDTITNALGGVTS 342

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GAT 305
             L+   F T++  L+    +  L+ P +TA + Q A    G    + T  SST   G T
Sbjct: 343 IKLEGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGNT 402

Query: 306 SVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------ 352
            VTT +        G+ L  TP +   G + L I   V +    V +  +          
Sbjct: 403 PVTTPEVELTPFFSGIALDVTPQIDEQGNVLLHIHPSVIDIKEQVKSIKIADSTLELPLA 462

Query: 353 ---VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R++DT ++  SG  +V+ GL+K +  +L   +PLL  IP LG  F N   +  +TE
Sbjct: 463 QSEIRESDTVIKAASGDVVVIGGLMKSENIELVSKVPLLGDIPFLGEAFTNRANSTVKTE 522

Query: 410 IFIAATPFLV 419
           + I   P +V
Sbjct: 523 LVILLKPIVV 532


>gi|88811950|ref|ZP_01127203.1| Fimbrial assembly protein pilQ precursor [Nitrococcus mobilis
           Nb-231]
 gi|88790834|gb|EAR21948.1| Fimbrial assembly protein pilQ precursor [Nitrococcus mobilis
           Nb-231]
          Length = 686

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 108/270 (40%), Gaps = 35/270 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           +++++ L+I    QV ++  +     D   ++G +   + + S    S            
Sbjct: 414 RRLVSKLDIP-VRQVLIESRVVIANDDFTNELGVRFGYSRNQSNFGTSNHGAVIGGTQPG 472

Query: 230 ---FAADFGGKFVSEGGDFSVK----------------GVLDRFSFETVLHALERATAIR 270
              F    G +  +  G+  +                 G +  +  +  L A+E      
Sbjct: 473 NVNFGQSTGFEVPAGSGNEGLLVDLPVTAAAGSVGLAVGKIGSYLLQLELSAMENENRGN 532

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            ++ P +   + + A    G Q  ++  +SS GATSV   +  + L  TP +    RI L
Sbjct: 533 LISTPRVITTNQKEAYIKQGVQIPFQQATSS-GATSVQFKEAVLGLTVTPQITPDDRILL 591

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            +Q          NAG  P+   +   T V + +G TIVL G+ + +  +    +P   +
Sbjct: 592 DLQVTKDSRGEQTNAG--PAINTQSLGTQVLVDNGETIVLGGVYERNKNRTINRVPFFGE 649

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P+LG LFRN+       E+ I  TP ++K
Sbjct: 650 LPLLGWLFRNTVRVDNNKELLIFVTPKILK 679


>gi|254186538|ref|ZP_04893055.1| general secretion pathway protein D [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157934223|gb|EDO89893.1| general secretion pathway protein D [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 316

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 99/260 (38%), Gaps = 29/260 (11%)

Query: 212 QIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           Q G  +SI   ++G   +     G  G   +      +  +        +L     ++  
Sbjct: 4   QTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDA 63

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPT 321
             L+ P L  +  + A    G      T S S   +  T          D G+ LH  P 
Sbjct: 64  NVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQ 123

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           +   G + L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+
Sbjct: 124 ITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDN 183

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
            Q     +PLL  IP +G LFR+    R++T + +   P ++                  
Sbjct: 184 YQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------R 228

Query: 438 DDAKAFFFNRVNKIYGPKEA 457
           + A+A   NR + I G   A
Sbjct: 229 ETAQAVTSNRYDYIQGVTGA 248


>gi|154246049|ref|YP_001417007.1| general secretion pathway protein D [Xanthobacter autotrophicus
           Py2]
 gi|154160134|gb|ABS67350.1| general secretion pathway protein D [Xanthobacter autotrophicus
           Py2]
          Length = 767

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 127/287 (44%), Gaps = 32/287 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++ T+AEV  +     G Q  +T    G  ++  +       S+  D ++  VL  F
Sbjct: 486 QVAIEATVAEVTLNDTLAYGVQFYLTSKDLGLGRNNGSVLN-TLSSDITDQAINRVLPGF 544

Query: 255 SF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------S 300
           +           +L AL   T ++ L+ P++  +  Q A+   G +    T S      S
Sbjct: 545 NLLVGRENQPRAILDALHTVTDVKVLSNPSVVVVDNQKATLQVGDEVPVSTGSATVLSSS 604

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSY 351
           +T   ++   + G++LH  P V   G++ L I+ E+S               + G  P+ 
Sbjct: 605 NTVVNTIEYKNTGIILHVVPRVNVNGQVRLEIEQEISNVTQSDPTTSGTSSNSTGLTPTV 664

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             RK  + + + SG T++LAGL+ +    +++G+P+L +IP +G  F ++    + TE+ 
Sbjct: 665 SQRKVKSVIAVASGQTVLLAGLISERHNGVRQGVPILDQIPGVGDAFAHTNGTVKRTELI 724

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           I   P +++           D ++V ++ +A     V  + G  +A 
Sbjct: 725 IFIRPQIIRDNV--------DAHTVAEELRAKLRGTVTTLPGGPQAP 763


>gi|221201610|ref|ZP_03574648.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2M]
 gi|221207315|ref|ZP_03580325.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2]
 gi|221172903|gb|EEE05340.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2]
 gi|221178426|gb|EEE10835.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2M]
          Length = 571

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 97/242 (40%), Gaps = 16/242 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-----------SGPSKSF--AADFGGK 237
               QV ++  I E  +   + +G + ++               +GP  +   AA     
Sbjct: 300 RPSRQVRIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAAASAAGPRTALDLAARPLAG 359

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F +    F++         +  L ALE     + ++ P +       A    G +  Y+ 
Sbjct: 360 FDAATAGFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ- 418

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                G T V      + L   P +   GR+ L +  +V++  +G      P+   +   
Sbjct: 419 AKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQ 476

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T VE+  GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  TP 
Sbjct: 477 TRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPT 536

Query: 418 LV 419
           +V
Sbjct: 537 IV 538


>gi|262164147|ref|ZP_06031886.1| MSHA biogenesis protein MshL [Vibrio mimicus VM223]
 gi|262027675|gb|EEY46341.1| MSHA biogenesis protein MshL [Vibrio mimicus VM223]
          Length = 558

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 111/277 (40%), Gaps = 41/277 (14%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233
           ++V   L I+ +    QV L+  I EV      Q G   +   +S+G      + + + D
Sbjct: 260 RQVTEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISQD 319

Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             G  +S             GG  ++  V+   SF+ V+  +     +  L+ P +TA +
Sbjct: 320 SSGNPISAVLPGLDAIGTLLGGQSNL--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 377

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331
            Q A    G    Y T  SS   T          ++T    G+ L  TP +   G + L 
Sbjct: 378 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 437

Query: 332 IQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +   V                 ++P  R  +R++D+ +    G  +V+ GL+K +     
Sbjct: 438 VHPAVIEVEQQTKRITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 497

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 498 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 534


>gi|119503108|ref|ZP_01625193.1| general secretory pathway protein D precursor [marine gamma
           proteobacterium HTCC2080]
 gi|119461454|gb|EAW42544.1| general secretory pathway protein D precursor [marine gamma
           proteobacterium HTCC2080]
          Length = 743

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 115/282 (40%), Gaps = 14/282 (4%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
           +G         R V   E              + K  +  L++    QV ++ +I EV  
Sbjct: 437 NGDGNDEAAEVRVVADEENNSLMIYSTGMQYKTIKAAVEKLDVP-PTQVLIEASIVEVSL 495

Query: 208 DILKQIGFQHSITGSSSGPSKS-FAADFGGKFVSEGGDFSVKGVLDRF-------SFETV 259
           +   + G + +      G   S   A   G+F   G +  V  +L           +  V
Sbjct: 496 NDQLKYGLEWTFNNQIGGSDYSGIGAISDGEFNVAGAEGPVAQLLKGQLCSFKWCDYVAV 555

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVV 315
           L+AL   + +  ++ P++  +    A+   G Q    + S+ T       +++  D GV 
Sbjct: 556 LNALATESLVNVISTPSVMVLDNNVATINVGDQVPINSGSTITNGGNTIQNISYKDTGVQ 615

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L   P+V + G + L +   V+  V  ++      +  R  ++ V + SG ++VL GL++
Sbjct: 616 LTVRPSVNAGGLVTLDVLQTVT-DVGNIDVTGNRRFLERSIESRVAVRSGESVVLGGLIR 674

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           ++    + G+P   K PI+G LF  +   R+ TE+ +  TP 
Sbjct: 675 ENAANNENGVPWFYKAPIIGPLFGTTEKKRDRTELLVIITPR 716


>gi|86147852|ref|ZP_01066158.1| MSHA biogenesis protein MshL [Vibrio sp. MED222]
 gi|85834379|gb|EAQ52531.1| MSHA biogenesis protein MshL [Vibrio sp. MED222]
          Length = 562

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 121/319 (37%), Gaps = 42/319 (13%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           ++E     ++  G  +++  + +A  ++        R        ++ + +     + QV
Sbjct: 227 QLEAAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIRE------VREFLGISQKRLQRQV 280

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------------GGKFVSE 241
            L+  I EV      Q G   +   SS+G + +                    G   +  
Sbjct: 281 ILEAKIMEVTLSDGYQQGINWTKMFSSNGTNYTLGMGSIVKNAAGTIIPGKLPGMDPIGT 340

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSS 300
                   V+   SFE VL  ++    +  L+ P +TA + Q A    G    + T +SS
Sbjct: 341 ALGGQSNLVVSGGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGIDKYFVTNLSS 400

Query: 301 STGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----------PV 340
           S G+           +T    G+ L  TP +   G + L +   V E             
Sbjct: 401 SVGSGDNANVAPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEVKELNLGST 460

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            GV    +    +R++D+ +    G  +V+ GL+K +   +   +P L  IP LG LFRN
Sbjct: 461 TGVVTLPLAKSSIRESDSVIRAQDGDVVVIGGLMKSNTSDMTSKVPFLGDIPALGHLFRN 520

Query: 401 SRFNREETEIFIAATPFLV 419
           +    ++TE+ I   P +V
Sbjct: 521 TSQLTQKTELVILLKPTVV 539


>gi|171060077|ref|YP_001792426.1| type IV pilus secretin PilQ [Leptothrix cholodnii SP-6]
 gi|170777522|gb|ACB35661.1| type IV pilus secretin PilQ [Leptothrix cholodnii SP-6]
          Length = 726

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 96/278 (34%), Gaps = 44/278 (15%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  +++    QV ++  I E      + +G +   T                  ++ G
Sbjct: 443 QMIAKIDVP-VRQVMIEARIVEAEDSFGRTLGVKLGATDLRGINGGVPGWGGNNTRIALG 501

Query: 243 GD-----------------------------------------FSVKGVLDRFSFETVLH 261
           G+                                          S+ G          L 
Sbjct: 502 GNYSSIGDTTLQQATGSIYANSQFVNLPANTSSLGGATAATFALSLFGASSNRFLNLELS 561

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           ALE     + ++ P +       A    G +  Y+T  +   A S+      + L  TP 
Sbjct: 562 ALEAEGKGKLVSSPRVVTADQVKALIEQGTELPYQTGGNQQTAPSIAFRKATLKLEVTPQ 621

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +   G I + +  +V++  +G       +   +   T V + +GGT+V+ G+ +    + 
Sbjct: 622 ITPEGNIIMDV--DVNKDSVGQQTLAGFAINTKHVKTQVLVENGGTVVIGGIFETTETES 679

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              +P+L  IP LG LFRN      +TE+ +  TP ++
Sbjct: 680 VNKVPVLGDIPFLGVLFRNKTRVANKTELLVFLTPKVI 717


>gi|94269217|ref|ZP_01291402.1| type II and III secretion system protein:Secretin/TonB, short-like
           [delta proteobacterium MLMS-1]
 gi|93451297|gb|EAT02179.1| type II and III secretion system protein:Secretin/TonB, short-like
           [delta proteobacterium MLMS-1]
          Length = 557

 Score =  172 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 72/325 (22%), Positives = 128/325 (39%), Gaps = 51/325 (15%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTI 202
           ++ G  R  +D  +A ++     S     +      ++V   L+   E    QV L+  I
Sbjct: 206 MIVGTDRGREDGSQARQVIVNSKSGLVMVRALPGELREVETFLDALLENALRQVMLEAKI 265

Query: 203 AEVRRDILKQIGFQHSITGSSS-----------------------GPSKSFAADF----- 234
            EV  D   Q G       +S                        G + + +AD      
Sbjct: 266 IEVELDEAFQSGINWGKLATSGRDTLKLGQIGGGTVLDDGVSAIAGNTGNLSADNYNPID 325

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           G    + GG F++   LD  SF   +  L+    +  L+ P +   + Q A    G    
Sbjct: 326 GTTTSAFGGVFTLATSLDHSSFHAFIELLKTQGDVHVLSSPRVATTNNQKALIKVGNDEY 385

Query: 295 YKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           + T  S +  T+           +T    G+ L  TPT+     + L I+  VS+     
Sbjct: 386 FVTDVSFSTRTTGTDDTIYPDLELTPFFSGIALDVTPTITDGNEVILHIRPSVSQVRDQT 445

Query: 344 NAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            +  +            R+R++D+ V   SG  I++ GL++D  ++ + G+P L  +P++
Sbjct: 446 KSFTVAGQTQSLPLALSRMRESDSIVRARSGQVIIIGGLMEDSWREQRAGLPGLGDLPLV 505

Query: 395 GALFRNSRFNREETEIFIAATPFLV 419
           G LFR  R+++ +TE+ I   P +V
Sbjct: 506 GNLFRQQRWSQRKTELVILLRPVVV 530


>gi|261253997|ref|ZP_05946570.1| MSHA biogenesis protein MshL [Vibrio orientalis CIP 102891]
 gi|260937388|gb|EEX93377.1| MSHA biogenesis protein MshL [Vibrio orientalis CIP 102891]
          Length = 552

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 127/331 (38%), Gaps = 41/331 (12%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           ++E+    ++  G  +++  + +A  ++        R        +  + +       QV
Sbjct: 218 QLEVAVSQLIGSGNGQSVVVTPQASVITIRAYPDEIRE------VRSFLGISQQRMHRQV 271

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEG-----GDFS 246
            L+  I EV      Q G   S   SS+G + +        D  G  +           +
Sbjct: 272 ILEAKILEVTLSDGYQQGINWSKAFSSNGTNYTIGQGSIVKDASGSIIPAALPGLDAIGT 331

Query: 247 VKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           + G     V+   SFE VL  +     +  L+ P +TA + Q A    G    Y T  SS
Sbjct: 332 LLGGQSNLVISSGSFEAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSS 391

Query: 302 ----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-------EVSEPVIGVN 344
                     +    +T    G+ L  TP +   G + L +         +V E   G  
Sbjct: 392 VVGSGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVDEQVKEIGYGNT 451

Query: 345 AGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +  +P  R  +R++D+ +    G  +V+ GL+K +       +P L  IP LG LFRN+ 
Sbjct: 452 SITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTIDQVSKVPFLGDIPALGHLFRNTT 511

Query: 403 FNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
              ++TE+ I   P +V      ++L R  D
Sbjct: 512 KLTQKTELVILLKPSVVGVNTWQKELERSRD 542


>gi|262401512|ref|ZP_06078079.1| MSHA biogenesis protein MshL [Vibrio sp. RC586]
 gi|262352227|gb|EEZ01356.1| MSHA biogenesis protein MshL [Vibrio sp. RC586]
          Length = 556

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 107/275 (38%), Gaps = 37/275 (13%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++V   L I+ +    QV L+  I EV      Q G   +   +S+G +         K 
Sbjct: 258 RQVTEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISKD 317

Query: 239 VSEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
            S     +V                 V+   SF+ V+  +     +  L+ P +TA + Q
Sbjct: 318 ASGNPISAVLPGLDAIGTLLGGQSNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQ 377

Query: 284 SASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            A    G    Y T  SS   T          ++T    G+ L  TP +   G + L + 
Sbjct: 378 KAVIKVGTDEFYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVH 437

Query: 334 TEV-------SEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             V        + V      ++P  R  +R++D+ +    G  +V+ GL+K +       
Sbjct: 438 PAVIEVEQQTKKIVYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSK 497

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 498 VPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 532


>gi|221133689|ref|ZP_03559994.1| type IV pilus secretin PilQ [Glaciecola sp. HTCC2999]
          Length = 473

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 106/259 (40%), Gaps = 24/259 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---------- 232
           +++  L+I    QV ++  +  VR +I  QIG +  ITG     + S +A          
Sbjct: 215 QMIKELDIP-VRQVLIESRMITVRDNIDDQIGIRWGITGQKGHLAVSGSAAAANDIKAGI 273

Query: 233 --------DFGGKFVSEGGDFSV--KGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                   +     V+  G   V    ++D    +  L ALE       +A P +T  + 
Sbjct: 274 IPDISDRLNVNLPIVNSAGRLGVQIASLMDGTILDLELSALETENKGEIIASPRITVANQ 333

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           Q A    G +  Y   S++ G+TSV      + L   P +    RI L +          
Sbjct: 334 QEAYIEQGTEIPY-VQSTANGSTSVAFKKAVLSLKVIPQITPDDRIILDLVITQDTRGET 392

Query: 343 VNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           V+    P+     ++  T V + +G TIVL G+ +         +P+L  +P++G LF+N
Sbjct: 393 VSTATGPAVAIDTQEIKTQVLVENGETIVLGGIFQKISTNDIAKVPILGNVPLVGGLFKN 452

Query: 401 SRFNREETEIFIAATPFLV 419
                ++ E+ I  TP ++
Sbjct: 453 KVSIEQKRELLIFVTPKII 471


>gi|291327009|ref|ZP_06126658.2| competence protein E [Providencia rettgeri DSM 1131]
 gi|291312226|gb|EFE52679.1| competence protein E [Providencia rettgeri DSM 1131]
          Length = 358

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 121/324 (37%), Gaps = 16/324 (4%)

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV---SDTVVLHGMVRTIQDS 157
           L+  +          +      L   + + I+ +   V  +    DT +L        D 
Sbjct: 44  LVTENQPTPETAVAQVTPSKTSLTQKIFKLISTNVQEVRHLLEHPDTSLLSKNASIHHDI 103

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
                + +    +            K           QV +   I    R  L+++G + 
Sbjct: 104 TTNSLIIKEDPDRLALIDEWIKHQDK--------PNKQVQITAHIISSSRTALQELGLEW 155

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
            +    +  +           +S    F+V  + D    E  L ALE+   +  +A P L
Sbjct: 156 GMMAGGNLNANHLYRYNRYSSISGQFAFNVLSLGDGL-LEMKLKALEKENLLSIIASPRL 214

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            A   Q AS   G +  Y T  S+   T V   D  + +  TP+++   +I L ++   +
Sbjct: 215 VASHQQPASIQQGTEIPYVT--SNDKKTHVQFKDAVLGMDVTPSIVRDEKIELNLKISHN 272

Query: 338 EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            P   + +      +   ++  T V + +  T++L G+ +   ++ + G+P LS IP LG
Sbjct: 273 SPDTALTSSQHHHLAINKQEIATNVTIKNNETLILGGIFQQKQEKTEMGLPFLSHIPFLG 332

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LF N+  + ++  + +  TP L+
Sbjct: 333 TLFTNTAEHTDKRVLIVFITPKLI 356


>gi|307721768|ref|YP_003892908.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979861|gb|ADN09896.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 565

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 157/390 (40%), Gaps = 39/390 (10%)

Query: 55  NKVIILQVPVDVQDVLVSDPT-----KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           N+  +L +   ++ +++ +         D V      + +FGK  G  ++++I  D   +
Sbjct: 24  NEYQVLPLQKKIKRLIIGNKETINVSLLDAVSAKGTLLKIFGKKTGNTSILVIYTDN-SI 82

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N  + +  ++ +++  +     +  +  ++ +D+ V+ G+ +   D +R  E+      
Sbjct: 83  QNYHVYVNENLGYIQKMINIIEPNLRLS-KVGNDSTVIAGVFKDPHDKKRIYEIL----- 136

Query: 170 QSGRNQYANSSSKKVMNLLNIAGED-QVTLKVTIAEVRRDILKQI------GFQHSITGS 222
                Q    +++K+M+L      +  +  K+ +  V     K +       F +    +
Sbjct: 137 -----QKGGINTEKLMDLTKTQKVNKMIRTKLYLIAVDNQKAKDLGGVTGLSFFNKYVNA 191

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           ++  + + +A F G  +   G+F+        S    L+ L+       L +  L     
Sbjct: 192 TANAAAANSATFSGFLLDNLGNFTTS---TGNSVLATLNFLQTKGITNILDDTVLITTED 248

Query: 283 QSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVS 337
           ++A+F  GG+    T  +    T     V   +YG+ L  T   + + G + + +  + S
Sbjct: 249 KNATFRVGGELYIPTGITQNVGTAPTIQVEAKEYGLKLTLTSKFMQTNGYMHINVDIQDS 308

Query: 338 EPVIGV-------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
                +       +   +PS+  +   T V + S   I L G L  +  + +E +PL   
Sbjct: 309 AIDANIAHNVSLGDGISIPSFVSKNIKTNVVVKSEQVIALGGRLHSENSKSEEKVPLFGD 368

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
           IPILG LF++   N   T++     P +V 
Sbjct: 369 IPILGELFKHKIENLGTTDLIFLLVPEIVD 398


>gi|121603587|ref|YP_980916.1| type IV pilus secretin PilQ [Polaromonas naphthalenivorans CJ2]
 gi|120592556|gb|ABM35995.1| type IV pilus secretin PilQ [Polaromonas naphthalenivorans CJ2]
          Length = 712

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 103/264 (39%), Gaps = 30/264 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFAADF 234
           +  +  L+IA   QV ++  I E      + +G +            +    + S   ++
Sbjct: 446 QNFIAKLDIA-VRQVLIEARIVEASDTFGRSLGVRLGGGTIGAAGALTRGNTNVSLGTNY 504

Query: 235 GGKFVSEGGDF-----SVKGVLDRFS--------------FETVLHALERATAIRTLAEP 275
           G       G+F     S  GV +  S                  L ALE     + ++ P
Sbjct: 505 GATVADTSGNFVSFPASTLGVANAASSFAVSIFNASANRFLNLELSALEADGKGKIVSSP 564

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +       A    G +  Y+T +SS GATS+      + L  TP +   G I L +  +
Sbjct: 565 RVVTADQTKALIEQGTEFPYQTATSS-GATSLAFRKANLKLEVTPQITPEGNIILDL--D 621

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           V++   G       +   +   T V + +GGT+V+ G+   +    +  +PLL  +P LG
Sbjct: 622 VNKDSRGETTAAGIAIDTKHIQTQVLVENGGTVVIGGIFTLEETNNEVKVPLLGDVPYLG 681

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LF++      + E+ +  TP ++
Sbjct: 682 NLFKSRERTSRKQEMLVFITPKMI 705


>gi|77163786|ref|YP_342311.1| fimbrial assembly protein pilQ precursor [Nitrosococcus oceani ATCC
           19707]
 gi|254435512|ref|ZP_05049019.1| type IV pilus secretin PilQ subfamily, putative [Nitrosococcus
           oceani AFC27]
 gi|76882100|gb|ABA56781.1| Fimbrial assembly protein pilQ precursor [Nitrosococcus oceani ATCC
           19707]
 gi|207088623|gb|EDZ65895.1| type IV pilus secretin PilQ subfamily, putative [Nitrosococcus
           oceani AFC27]
          Length = 699

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/269 (20%), Positives = 103/269 (38%), Gaps = 31/269 (11%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ +K++  L+I    QV ++  +     D  + +G +  ++G          A   G  
Sbjct: 430 AALRKLVASLDIP-VRQVLIESRVVIASSDFSRDLGVRFGLSGRGDTSGTFDQATTSGSL 488

Query: 239 VSEGGDFSVKGV--------------LDRFSFETVLHAL-------------ERATAIRT 271
                  + + +               D       L  L             +       
Sbjct: 489 NGTTQIINRETLELQDRLNVNFPVTKKDAAKIALALTNLPLGALLELELSALQAEGRGEV 548

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           ++ P +   + + A    G +  Y+  SSS GATSV+     + L  TP +    RI + 
Sbjct: 549 ISNPRVITSNQKEAIIEQGTEIPYQRASSS-GATSVSFKKAVLSLTVTPQITPDDRIIMD 607

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +   V++  +G     +PS   RK  T V + +G T+VL G+ + +  +    IP L  +
Sbjct: 608 L--GVTKDSVGKVFNGVPSINTRKVATQVLVNNGQTVVLGGIYEQEKNRAVRRIPFLGDL 665

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P  G LFR+      + E+ I  TP ++K
Sbjct: 666 PYAGILFRDKSEFNNKRELLIFVTPKIIK 694


>gi|161523474|ref|YP_001578486.1| type IV pilus secretin PilQ [Burkholderia multivorans ATCC 17616]
 gi|160340903|gb|ABX13989.1| type IV pilus secretin PilQ [Burkholderia multivorans ATCC 17616]
          Length = 573

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 16/242 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGK 237
               QV ++  I E  +   + +G + ++                    +   AA     
Sbjct: 302 RPSRQVRIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAGASPAGARTALDLAARPLAG 361

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F +    F++         +  L ALE     + ++ P +       A    G +  Y+ 
Sbjct: 362 FDAATAGFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ- 420

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                G T V      + L   P +   GR+ L +  +V++  +G      P+   +   
Sbjct: 421 AKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQ 478

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T VE+  GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  TP 
Sbjct: 479 TRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPT 538

Query: 418 LV 419
           +V
Sbjct: 539 IV 540


>gi|95929094|ref|ZP_01311839.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134995|gb|EAT16649.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
          Length = 553

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 37/275 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
             +N   +  + QV L+  I EV  +   Q G   +    +   + +     GG ++S+G
Sbjct: 259 DYLNKTQVTLQRQVILEAKIIEVELNDGYQTGINWAGLIHNGNNTATIGQVGGGTYLSDG 318

Query: 243 GD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                                     L    FE  + A++    ++ L+ P ++ ++ Q 
Sbjct: 319 VSEIAGTNPLVNGLVTSAFGGVFSTTLQFDDFEAFIEAVKSQGDVQVLSSPRISTLNNQK 378

Query: 285 ASFTSGGQHLYKTVSSSTGATSVT----------THDYGVVLHFTPTVLSPGRIGLRIQT 334
           A    G    + T  SS   T  T              G+ L  TP +   GR+ L +  
Sbjct: 379 AVIKVGTDEFFVTDISSDTVTGTTTTTTPDITLTPFFSGIALDVTPQISGQGRVTLHVHP 438

Query: 335 EVSEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            VSE V       +             VR++DT VE  SG  +V+ GL+K+   +   G+
Sbjct: 439 TVSEVVDQTKVITVAGQAQSLPLAFSSVRESDTIVEARSGQVVVIGGLMKNSDTREGAGV 498

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           PLL  IP LG LFR+ + +  ++E+ I   P +V+
Sbjct: 499 PLLGDIPGLGHLFRHQKNSTSKSELIILLKPLVVE 533


>gi|298369928|ref|ZP_06981244.1| type IV pilus secretin PilQ [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281388|gb|EFI22877.1| type IV pilus secretin PilQ [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 715

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 105/269 (39%), Gaps = 30/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------- 226
           +K+++ L++    QV ++  I E      + +G +    G+ S                 
Sbjct: 443 RKLIDELDVPT-RQVMVEARIVEAEEGFSRNLGVKFGAAGAGSRNAWGSNWSNAQNNNNT 501

Query: 227 ------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                       + S   +      S     ++   L   +    L A E     +TL+ 
Sbjct: 502 NASFNRGEVGYRTWSLDPNVSLPTASATSSIALVRSLSSGALGLELSASEELGKSKTLSN 561

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +     + A   SG +  Y+  +SS GATSVT     + L  TP +   G+I + ++ 
Sbjct: 562 PRVLTQDRKEAIIESGTEIPYQEATSS-GATSVTFKKAVLGLTVTPNITPDGQIIMTVKI 620

Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
               P+    +         +  +T   +  GGT+++ G+ +++       +PLL  IP+
Sbjct: 621 NKDSPIDCQTDGLRTKCISTKNLNTQAMVEDGGTLIVGGIYEEENSNAVNKVPLLGDIPV 680

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422
           +G LF++   +    E+ I  TP ++  V
Sbjct: 681 VGNLFKSRGRSERRRELLIFITPRIMDGV 709


>gi|312143767|ref|YP_003995213.1| type II and III secretion system protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904418|gb|ADQ14859.1| type II and III secretion system protein [Halanaerobium sp.
           'sapolanicus']
          Length = 629

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/315 (20%), Positives = 125/315 (39%), Gaps = 37/315 (11%)

Query: 108 QMLNLDILIER-DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           +     + ++  D   ++  +  F  D  + V   +  +V++G                 
Sbjct: 249 EPGTRHVRVDYVDTEQIKEVIENFYPDIRLHVNNKTKRIVING----------------- 291

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
                   +    S ++++  LN+    QV ++  + EV    L+++G +  ++      
Sbjct: 292 -------PENRLDSVEQLVKQLNVP-RQQVVIETRVEEVSEGRLRELGIEGDLSQLRIIK 343

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                         +    S+        +     AL+  +  +TLA P L  ++G++A+
Sbjct: 344 DDHITDRRADSREPQPDKLSLT-------WPEFFRALDETSDSKTLANPRLMTLNGETAN 396

Query: 287 FTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IG 342
                +  Y+ V  +   +   +    + GV + FTP +     I L I+  VS    + 
Sbjct: 397 MAILDEVPYRVVEINDDGSRTETFEYAEAGVDIEFTPWITENKEIELSIKPRVSSFTQVT 456

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             AG  P+ R R+ +T + L  G T+ + GL++ D   +   IPLL  IPI+G LF++ R
Sbjct: 457 TAAGAPPALRSREVETMLRLNDGETLAIGGLIQTDQDGVITKIPLLGDIPIIGELFKSRR 516

Query: 403 FNREETEIFIAATPF 417
                 E+ I  TP 
Sbjct: 517 NEGSHNELIIFVTPR 531


>gi|240141999|ref|YP_002966509.1| putative General secretion protein D [Methylobacterium extorquens
           AM1]
 gi|240011943|gb|ACS43168.1| putative General secretion protein D [Methylobacterium extorquens
           AM1]
          Length = 693

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 112/248 (45%), Gaps = 14/248 (5%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +  L++    QV ++ TIAEVR +   + G +        G   S  + FG    S  G 
Sbjct: 417 IRNLDVL-PTQVLIEATIAEVRLNEALRHGVRWYFQAGGLGQGASMGSGFGTSGRSVTGQ 475

Query: 245 FSVKGVLDRFSFETV-----LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
            S   +   +S         + ALE  T +  ++ P LT +  Q+A+   G Q    T S
Sbjct: 476 GSAGEIALTYSLGLANAKLAISALESVTDVEIVSSPALTVLDNQTATLKVGEQVPIATRS 535

Query: 300 SSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSY 351
           + +   +       +   D GV+L  TP V + G + L I+ E S+ V    +  D P+ 
Sbjct: 536 ARSVVNADAPLVNDIEMKDTGVILQVTPRVNAGGLVMLDIKQEASDVVPTTTSNLDSPTI 595

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           R+R+  +T+ + SG  IVL G+++    +   G+P L  IP+LG    N    ++ TE+ 
Sbjct: 596 RLRQITSTIAVKSGAEIVLGGIIQRGRHRGAGGVPFLRDIPLLGTALNNIDSGQDRTELV 655

Query: 412 IAATPFLV 419
           I   P ++
Sbjct: 656 IIIRPTVM 663


>gi|239994918|ref|ZP_04715442.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshL (pilus type IV) [Alteromonas macleodii ATCC 27126]
          Length = 582

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 113/314 (35%), Gaps = 46/314 (14%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +  + ++ V   +  L          +  K  +N    + + QV L+  I EV  +   Q
Sbjct: 250 SPTEGRQVVVSPQAGLVTVRALPSEIAVVKDFLNQSQESLQRQVVLEARIIEVTLNDGYQ 309

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV---------------------- 250
            G +     S    S +F    GG   S     +  G+                      
Sbjct: 310 QGVRWDRIASGLTGSVNFGFS-GGAIASNFAANTAAGIDPAINAVNGIGNSISTDIGGVS 368

Query: 251 ---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
              + R  F+ V++ L+    ++ L+ P +T  + Q A    G    + T  S++   S 
Sbjct: 369 TLRISRGDFDGVINMLQTQGDVQMLSNPRVTVTNNQKAVIKVGQDEYFVTDVSTSEDQSA 428

Query: 308 TTHD-----------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-------- 348
           T  +            G+ L  TP +   G + L +   V+E         +        
Sbjct: 429 TQTENENDIELTPFFSGIALDVTPQIDRSGSVILHVHPSVTETAEQTKVIQVGDQQILLP 488

Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
                +R++DT +    G  +V+ GL++    + +   PLL  IP +G  F+N    + +
Sbjct: 489 LAQSNIRESDTVIRARDGEIVVIGGLMETVTSEQESKTPLLGDIPFIGNAFKNKAKTQSK 548

Query: 408 TEIFIAATPFLVKP 421
            E+ I   P +V+P
Sbjct: 549 RELVILIRPSVVQP 562


>gi|119505541|ref|ZP_01627613.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2080]
 gi|119458650|gb|EAW39753.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2080]
          Length = 723

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 116/342 (33%), Gaps = 72/342 (21%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
           +    +     +VV+     +I  +  A +L+E                + ++  +++  
Sbjct: 393 EEGGSLVSDRGSVVVDERTNSIIITDTATKLAEI---------------RDLIERVDVPI 437

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------- 237
             QV ++  I     ++ +++G +          S        G                
Sbjct: 438 -RQVMIEARIVIASTNLDEELGIEWGGGYIGIDSSNGNIYSASGSREQVVSFNQDTVAGV 496

Query: 238 -------------------------------------FVSEGGDFSVKGVLDRFSFETVL 260
                                                       F+V    +       L
Sbjct: 497 TPTLNYPVQGGQQQGGNQGGDGQQQQQGLGAALVDLGVSQATSGFAVGFTSNDLFLTAEL 556

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            ALE +     +++P +     Q A+  SG +  Y+  ++S GAT+V+  +  + L  TP
Sbjct: 557 SALESSGQGEVVSQPKIITGDKQLATIKSGSEIPYQEGAAS-GATTVSFKEAVLKLEVTP 615

Query: 321 TVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            +    RI L +        + V     G +P+    +  T V + +G T+VL G+ ++D
Sbjct: 616 NITPDDRILLDLVVNQDSLGDLVPSGTGGLIPTINTTQLTTQVLVGNGETVVLGGVFQND 675

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                  +P L  IP LG LF+N+     +TE  I  TP ++
Sbjct: 676 EITQIRKVPFLGDIPYLGTLFKNTASKTSKTETLIFITPRIL 717


>gi|121997138|ref|YP_001001925.1| pilus (MSHA type) biogenesis protein MshL [Halorhodospira halophila
           SL1]
 gi|121588543|gb|ABM61123.1| pilus (MSHA type) biogenesis protein MshL [Halorhodospira halophila
           SL1]
          Length = 538

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 125/320 (39%), Gaps = 37/320 (11%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV------MNLLNI 190
           RV+  S++ +   +  T+       + +    S            + +      ++ L  
Sbjct: 196 RVDTASNSDLWGQVEETVSRMIDDDDTASVVASPQAGTLAVRGMPESLRRVEAFVDRLQG 255

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKG 249
           +   QV L+  I EV      Q G      G   G +   +   G    +S  G F++  
Sbjct: 256 SLNRQVILEARILEVELGDDFQAGISWESLGRHDGQALEGSFRPGDNLELSSAGVFNIGI 315

Query: 250 V----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------S 299
                  R  FE  L ALE+   ++ L+ P ++ ++ Q A   +G    Y+T       +
Sbjct: 316 TRGQDGQRGFFEGFLRALEQQGDVQVLSTPQVSTLNNQKAVIKAGTDSFYQTDFSINYRT 375

Query: 300 SSTGATSVTTHD---------YGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNA 345
              G  + T  +          G+ L  TP +   G I L +Q  V+E       +    
Sbjct: 376 VEVGGQTTTQPELDPDFEPFFSGIALDVTPQIEESGWINLHVQPSVTEVRERERTLRTGR 435

Query: 346 GD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           GD      +    VR++D+ V   SG  IV+ GL+++  QQ    +PLL ++P+LG LF 
Sbjct: 436 GDDEVRFSLAESDVRQSDSIVRARSGEMIVIGGLIEEREQQETSRVPLLGRVPLLGWLFT 495

Query: 400 NSRFNREETEIFIAATPFLV 419
             R    + E+ I   P +V
Sbjct: 496 QERQESSKYELVILLRPRVV 515


>gi|146338379|ref|YP_001203427.1| putative general secretion pathway protein D [Bradyrhizobium sp.
           ORS278]
 gi|146191185|emb|CAL75190.1| Putative general secretion pathway protein D [Bradyrhizobium sp.
           ORS278]
          Length = 780

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 148/400 (37%), Gaps = 54/400 (13%)

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMV 151
             G       G  G    N+ ++  R         +  +   S  R        ++ G+ 
Sbjct: 404 AAGTTAST--GFSGASQANIGVVANRGFNGTPPPTQVGLDGGSEARASSAGGKPLMDGVR 461

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTIAEVRRD 208
            T       + +            YA+  + +++          + QV +  TIAEV  +
Sbjct: 462 ITPDVVNNTLLI------------YADRENYRIIEATLRQCDRPQLQVAIDATIAEVTLN 509

Query: 209 ILKQIGFQHSITGSSSGP-------SKSFAADFGGKFVSEGGDFS---VKGVLDRFSF-- 256
                G Q  +T  + G          + +        S  G  +   +      F+F  
Sbjct: 510 DNLTYGVQAYLTSKNLGLRPDQGSLLNTTSTSAPATVASAAGTITNAFLSRAFPGFNFLI 569

Query: 257 ------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGA 304
                   +L AL   T ++ L+ P+L  I  Q+A+   G Q    T S      ++T  
Sbjct: 570 GSESQPSAILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQVPVSTGSATVLTTNNTVV 629

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
            ++   + G++L   P V   G + L I+ E+S           P+   RK  ++V + S
Sbjct: 630 NTIDYRNTGIILRVAPRVNENGNVRLEIEQEISNVSPQTANSLTPTVAQRKVKSSVAVAS 689

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T++LAGL+ +  Q  + G+P + +IP  G LF N+  +R  TE+ I   P +++    
Sbjct: 690 GQTVLLAGLISETHQGTRTGLPGVDQIPGFGDLFSNNDRSRGRTELIIFIRPQIIRDG-- 747

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
                  D + V ++ ++     +     P   S ++ Q 
Sbjct: 748 ------TDAHYVAEELRSKLRGTIK----PVSTSALQAQR 777


>gi|58580480|ref|YP_199496.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622438|ref|YP_449810.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|58425074|gb|AAW74111.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366378|dbj|BAE67536.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 770

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 55/335 (16%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            +  + +++  D V +            AV  + T L +S    +  SS + V+  L++ 
Sbjct: 433 GNGAVTLDVAGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 479

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------SSGPSKSFA 231
              QV ++  +AEV      Q G       S                    +S   ++  
Sbjct: 480 -PMQVHIEAQVAEVNLTGKLQYGVNWYFENSVNAAADSAANSTGIGAGAGLASAAGRNIW 538

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            D  GK   E G    +      +  +++HAL+  T +R L  P++   +   A+   G 
Sbjct: 539 GDIAGKITGEKG---AQWTFLGKNAASIIHALDEVTNVRLLQTPSVFVRNNAEATLNVGS 595

Query: 292 QHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------ 339
           +    + S +TG       +SV   D GV+L   P V   G + L I  EVS P      
Sbjct: 596 RIAINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSPGDRPAA 655

Query: 340 ----VIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                  VNA         R+  T   + SG TI+LAGL+ D       GIP LSK+P++
Sbjct: 656 CTSATATVNAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDGSNGIPFLSKLPVV 715

Query: 395 GALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
           GALF +   N    E+ +  TP +V+ P   R+L+
Sbjct: 716 GALFGSKSRNSARREVIVLITPSIVRNPQEARNLT 750


>gi|329905849|ref|ZP_08274237.1| Fimbrial assembly protein pilQ precursor [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547489|gb|EGF32305.1| Fimbrial assembly protein pilQ precursor [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 327

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/280 (21%), Positives = 101/280 (36%), Gaps = 46/280 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---- 237
           +K++ + ++A   QV ++  I E      K +G +   T   +           G     
Sbjct: 45  RKLIQITDVAT-RQVLIEARIVEADDTFSKNLGAKLGFTDLRTARGGDSGYQLSGNNRVG 103

Query: 238 ------------------------------FVSEGGDFSVKGVLDRFSFETV-------- 259
                                           + G +    G L    F           
Sbjct: 104 LTGNYLGVGEQTGQATITDGSFIPNSQFVSLPAAGINGLNAGSLAVSLFSAAANRFLNLE 163

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE     + ++ P +     Q A    G +  Y+  +SS GATSV      + L  T
Sbjct: 164 LSALEADGRGKVISSPRVVTADQQQALIEQGEEIPYQKATSS-GATSVEFKKANLKLEVT 222

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +   G I L +  +V++   G  A    +   +   T V++ +GGT+VL G+      
Sbjct: 223 PQITPDGNIILTV--DVNKDSRGAPAPGGFAINTKHVKTNVQVENGGTVVLGGIFTQREL 280

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                IP    IP++G LF+ +    ++TE+ I  TP +V
Sbjct: 281 DSVTKIPFFGDIPVVGNLFKTTGRTNDKTELLIFITPKIV 320


>gi|148259896|ref|YP_001234023.1| general secretion pathway protein D [Acidiphilium cryptum JF-5]
 gi|146401577|gb|ABQ30104.1| general secretion pathway protein D [Acidiphilium cryptum JF-5]
          Length = 756

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 121/277 (43%), Gaps = 13/277 (4%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            +   N+S + ++  L+I    +V +  TIAEV  +   + G Q      S G +   + 
Sbjct: 456 ADASENASVEAMLRKLDI-EPLEVEIDATIAEVDLNGALKYGTQFFF--KSGGINAVLST 512

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                       F + G     +    + AL+  T ++ L+ P L   +G++A+   G  
Sbjct: 513 GTTAALNQSFPGFVLAGHGADGA-PLAISALQSVTQVQVLSSPQLLVQNGRTANLLVGNL 571

Query: 293 HLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGV 343
             Y + +S +  T+       V   + GV+L  TP + S G + L +  +VS   P +  
Sbjct: 572 VPYLSQTSQSTLTTGAPVINSVNYQETGVILQITPHISSDGLVALTVSQQVSNVAPSVTT 631

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
              + P++  R   ++V +  G TI LAGL+ D++Q+   G+P L  +P+LG LF     
Sbjct: 632 QGLNSPTFSERAVSSSVVVHDGQTIGLAGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDN 691

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           +R   E+ +  TP +V           D   ++ + A
Sbjct: 692 SRARQELLVLITPHVVHDATDAAALTSDLEQALPNAA 728


>gi|258406114|ref|YP_003198856.1| type II and III secretion system protein [Desulfohalobium retbaense
           DSM 5692]
 gi|257798341|gb|ACV69278.1| type II and III secretion system protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 499

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 106/256 (41%), Gaps = 21/256 (8%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---------DF 234
           V+N L      Q+ ++ +I E  ++  +++G +      +SG                D+
Sbjct: 242 VLNHLE-RPRKQIHIEASIVEATQNTARELGMRWRGRYVTSGRGIEDVGIIGDAQEPEDW 300

Query: 235 GGKFVSEGGDFS----------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G    +  G  +          V G +      + L ALE+   +  LA P+LT +  QS
Sbjct: 301 GSAITTLPGSGTDTLGGLKLGTVVGEIAGNVLFSQLQALEKEGQVNILASPSLTTMDNQS 360

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           AS   G +  Y+T +   G   V   D  + L   P ++    + + I     E     N
Sbjct: 361 ASTQHGERVPYET-TDEDGDRVVKFEDVAMGLKVHPRIIEGDLMAMDIVVTKDEVDFSQN 419

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P  R ++ +T + + +G TIV++GL K  +   + G+P L K+P L  LF+    +
Sbjct: 420 VQGNPLIRTKETETNLLVRNGETIVISGLSKQTVSGTEHGVPGLRKVPGLSWLFKGIDKS 479

Query: 405 REETEIFIAATPFLVK 420
            +  E  +  TP ++ 
Sbjct: 480 EDMEEFMVFITPTILD 495


>gi|78064965|ref|YP_367734.1| type II and III secretion system protein [Burkholderia sp. 383]
 gi|77965710|gb|ABB07090.1| type II and III secretion system protein [Burkholderia sp. 383]
          Length = 543

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 16/243 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADF----------GGK 237
               QV ++  I E  +   + +G + ++       SG S +F               G 
Sbjct: 272 RPSRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPSGESATFTTGARNALDLAARPLGG 331

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F +    F++         +  L ALE     + ++ P +       A    G +  Y+ 
Sbjct: 332 FEAATAGFTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQGSEVPYQ- 390

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                G + V      + L   P +   GR+ L +  +V++  IG      P+   +   
Sbjct: 391 AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQ 448

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T VE+ +GGT+ + G+ +   +     +PLL KIP LGALFR+     +  E+ +  TP 
Sbjct: 449 TRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQRNELVVFITPT 508

Query: 418 LVK 420
           +V 
Sbjct: 509 VVD 511


>gi|189351753|ref|YP_001947381.1| type IV pilus assembly protein [Burkholderia multivorans ATCC
           17616]
 gi|189335775|dbj|BAG44845.1| type IV pilus assembly protein [Burkholderia multivorans ATCC
           17616]
          Length = 528

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 16/242 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGK 237
               QV ++  I E  +   + +G + ++                    +   AA     
Sbjct: 257 RPSRQVRIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAGASPAGARTALDLAARPLAG 316

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F +    F++         +  L ALE     + ++ P +       A    G +  Y+ 
Sbjct: 317 FDAATAGFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ- 375

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                G T V      + L   P +   GR+ L +  +V++  +G      P+   +   
Sbjct: 376 AKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQ 433

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T VE+  GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  TP 
Sbjct: 434 TRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPT 493

Query: 418 LV 419
           +V
Sbjct: 494 IV 495


>gi|163749924|ref|ZP_02157169.1| general secretion pathway protein D [Shewanella benthica KT99]
 gi|161330438|gb|EDQ01417.1| general secretion pathway protein D [Shewanella benthica KT99]
          Length = 711

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 109/287 (37%), Gaps = 47/287 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
             V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 335 DSVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGIQWATAAGGMTQFNNLGPTIGEVGAGV 393

Query: 236 ---------------------GKFVSEGGDFSVKGV-----------LDRFSFETVLHAL 263
                                 K     GD ++              +    F  ++ A+
Sbjct: 394 WLAQDQKASQTCTGSGDTQTCTKNPDTPGDITILAQALGKINGMAWGVAMGDFGALIQAI 453

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLH 317
              T    LA P++T +  Q A+F  G +    T S S+        T+V   + GV L 
Sbjct: 454 SSDTRSNILATPSITTLDNQEATFIVGDEVPILTGSQSSSNGNSNPFTTVERREVGVKLK 513

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P +     + L I+ EVS      +     ++  R+  TTV + SG  +VL GL+ ++
Sbjct: 514 VIPQINEGTSVKLTIEQEVSGINGKTSVD--VTFATRRLTTTVMVDSGQIVVLGGLISEE 571

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           +Q+  + +P L  +PI+G LFR+S  ++++  + I     +++   +
Sbjct: 572 VQESVQKVPFLGDLPIIGHLFRSSSSSKKKKNLMIFIKATIIRDGII 618


>gi|239814151|ref|YP_002943061.1| type IV pilus secretin PilQ [Variovorax paradoxus S110]
 gi|239800728|gb|ACS17795.1| type IV pilus secretin PilQ [Variovorax paradoxus S110]
          Length = 714

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 41/274 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------------------- 220
            ++  L+I    QV ++  I E      K +G +                          
Sbjct: 438 DLIQKLDIP-VRQVLIEARIVEASDTFGKSLGVRLGGGISRERVASANGNPAYGTFGVMP 496

Query: 221 -------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALER 265
                          ++    +  A   G   +  G F++       S      + ALE 
Sbjct: 497 VTTAAGGVGGATATWTNSNFINLPAGDAGGTGNAPGTFAISLFNSSLSRMLNLEISALEA 556

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + ++ P +       A    G +  Y+  +SS GATS++     + L  TP +   
Sbjct: 557 DGKGKLVSSPRVITADQTKALIEQGEEIPYQQATSS-GATSISFRKAVLKLEVTPQITPE 615

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G I L +  +VS+   GVN    P+   +   T V + +GGT+V+ G+ +      +  +
Sbjct: 616 GNIILTL--DVSKDARGVNTSAGPAINTKHVQTEVLVENGGTVVIGGIFELTETNDESRV 673

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P+L ++P LGALFR       +TE+ +  TP ++
Sbjct: 674 PVLGEVPYLGALFRKRERVANKTEMLVFITPKMI 707


>gi|326403170|ref|YP_004283251.1| type II secretory pathway protein D [Acidiphilium multivorum
           AIU301]
 gi|325050031|dbj|BAJ80369.1| type II secretory pathway protein D [Acidiphilium multivorum
           AIU301]
          Length = 758

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 121/277 (43%), Gaps = 13/277 (4%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            +   N+S + ++  L+I    +V +  TIAEV  +   + G Q      S G +   + 
Sbjct: 458 ADASENASVEAMLRKLDI-EPLEVEIDATIAEVDLNGALKYGTQFFF--KSGGINAVLST 514

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                       F + G     +    + AL+  T ++ L+ P L   +G++A+   G  
Sbjct: 515 GTTAALNQSFPGFVLAGHGSDGA-PLAISALQSVTQVQVLSSPQLLVQNGRTANLLVGNL 573

Query: 293 HLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGV 343
             Y + +S +  T+       V   + GV+L  TP + S G + L +  +VS   P +  
Sbjct: 574 VPYLSQTSQSTLTTGAPVINSVNYQETGVILQITPHISSDGLVALTVSQQVSNVAPSVTT 633

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
              + P++  R   ++V +  G TI LAGL+ D++Q+   G+P L  +P+LG LF     
Sbjct: 634 QGLNSPTFSERAVSSSVVVHDGQTIGLAGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDN 693

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           +R   E+ +  TP +V           D   ++ + A
Sbjct: 694 SRARQELLVLITPHVVHDATDAAALTSDLEQALPNAA 730


>gi|188578583|ref|YP_001915512.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188523035|gb|ACD60980.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 766

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 55/335 (16%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            +  + +++  D V +            AV  + T L +S    +  SS + V+  L++ 
Sbjct: 429 GNGAVTLDVAGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 475

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------SSGPSKSFA 231
              QV ++  +AEV      Q G       S                    +S   ++  
Sbjct: 476 -PMQVHIEAQVAEVNLTGKLQYGVNWYFENSVNAAADSAANSTGIGAGAGLASAAGRNIW 534

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            D  GK   E G    +      +  +++HAL+  T +R L  P++   +   A+   G 
Sbjct: 535 GDIAGKITGEKG---AQWTFLGKNAASIIHALDEVTNVRLLQTPSVFVRNNAEATLNVGS 591

Query: 292 QHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------ 339
           +    + S +TG       +SV   D GV+L   P V   G + L I  EVS P      
Sbjct: 592 RIAINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSPGDRPAA 651

Query: 340 ----VIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                  VNA         R+  T   + SG TI+LAGL+ D       GIP LSK+P++
Sbjct: 652 CTSATATVNAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDGSNGIPFLSKLPVV 711

Query: 395 GALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
           GALF +   N    E+ +  TP +V+ P   R+L+
Sbjct: 712 GALFGSKSRNSARREVIVLITPSIVRNPQEARNLT 746


>gi|302036706|ref|YP_003797028.1| putative type IV pili biogenesis protein PilQ [Candidatus
           Nitrospira defluvii]
 gi|300604770|emb|CBK41102.1| putative Type IV pili biogenesis protein PilQ [Candidatus
           Nitrospira defluvii]
          Length = 664

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 102/257 (39%), Gaps = 30/257 (11%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADFGGKFVSEGGDFSVK- 248
            QV ++  I +      + +G Q  I       SS  + +F     G F ++  DF +  
Sbjct: 411 PQVQIEARIVQADTTYTRSLGVQWGIQNVNQLGSSSGTSAFKTGTTGAFGAQVSDFLINL 470

Query: 249 ----------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                           G  D    +  L A E     + +A P +T +  + A    G  
Sbjct: 471 PANPGLPSVPGAGFSIGKTDGAMLDVRLSAGELLGLTKVIAAPKITTLDKRDAKIAQGES 530

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG------RIGLRIQTEVSEPVIGVNAG 346
             ++T S     T  T  D  + L+ TP + S        +I ++++   +      N  
Sbjct: 531 IPFQTTS--LQGTQTTFVDANLELNVTPQITSRDPKEIGKQILMKVRATRNAVGARSNPA 588

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             PS   R+A T V +  G T+V+ G+  D       GIP LS+IP+LG LF+N   N  
Sbjct: 589 G-PSIDRREATTQVLVRDGETMVIGGVFVDTQSNNVAGIPYLSRIPVLGWLFKNKTENVS 647

Query: 407 ETEIFIAATPFLVKPVA 423
           + E+ I  TP +V+   
Sbjct: 648 KQELLIFLTPTIVRSTT 664


>gi|332529515|ref|ZP_08405473.1| type II and III secretion system protein [Hylemonella gracilis ATCC
           19624]
 gi|332041035|gb|EGI77403.1| type II and III secretion system protein [Hylemonella gracilis ATCC
           19624]
          Length = 509

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 105/262 (40%), Gaps = 28/262 (10%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----------------------QH 217
           + + ++  +++    QV ++  I E      + +G                        +
Sbjct: 242 AVRALIAKIDVP-VRQVLIEARIVEASDTFSRSLGARLGGAGGRSPSGGAGAGAGFGGSY 300

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVK--GVLDRFSFETVLHALERATAIRTLAEP 275
           S T + +G          G      G F+V   G          + ALE     + ++ P
Sbjct: 301 SATAAGAGGGSFVNLPSPGLGGQPAGVFAVSIFGESAARFLNLEISALEADGKGKVVSSP 360

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +       A    G +  Y+ VS+S+GATS++     ++L  TP +   G + L +  +
Sbjct: 361 RVVTADKVKALIEQGTELPYQ-VSTSSGATSISFRKANLMLEVTPQITPEGNVILEV--D 417

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           VS+  +G +     +   +   T V + +GGT+V+ G+   + ++    IP L  +P LG
Sbjct: 418 VSKDSVGQDTQAGFAIDTKHVKTQVLVENGGTVVIGGIYTQEERETVTKIPFLGDLPGLG 477

Query: 396 ALFRNSRFNREETEIFIAATPF 417
           ALFR      E+ E+ +  TP 
Sbjct: 478 ALFRAKETRSEKREMLVFITPK 499


>gi|269960458|ref|ZP_06174830.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834535|gb|EEZ88622.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 226

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 12/191 (6%)

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP+LTA+SG  A F +GG+        +    ++   +YGV L F P +LS  RI L
Sbjct: 1   MLAEPSLTALSGTQAEFVAGGEFPIPVP--NDDGITIDYKEYGVQLDFVPYILSDKRINL 58

Query: 331 RIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           ++   VSE                   +P    R A TT+EL  G TI +AGLL ++ + 
Sbjct: 59  KMNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLSENARN 118

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           + +GIP  S +P+LG LF++  F   ETE+ I  TP L  P+  R ++ P D +   +D 
Sbjct: 119 VADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGFVSPNDV 178

Query: 441 KAFFFNRVNKI 451
           + +   +  ++
Sbjct: 179 EFYLLGKGAEL 189


>gi|28899478|ref|NP_799083.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839930|ref|ZP_01992597.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ3810]
 gi|28807714|dbj|BAC60967.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746550|gb|EDM57538.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ3810]
 gi|328471385|gb|EGF42280.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus 10329]
          Length = 547

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/281 (23%), Positives = 113/281 (40%), Gaps = 32/281 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ + +     + QV L+  I EV      Q G   S   +S G S S   +     +  
Sbjct: 259 REFLGVSQERMQRQVILEAKILEVTLSDGYQQGINWSNLSASIGNSGSIIVNRPASALPP 318

Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                   GG  +V   +   +FE VL+ +     +  L+ P +TA + Q +    G   
Sbjct: 319 LDAIGTLLGGQTNVT--ISDGNFEAVLNFMSTQGDLNVLSSPRITAANNQKSVIKVGTDQ 376

Query: 294 LYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPV 340
            + T  SS               +T    G+ L  TP + + G + L +     EV+E V
Sbjct: 377 YFVTELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEV 436

Query: 341 IGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             +N G         +    +R++D+ +    G  +V+ GL+K    +    +P L  +P
Sbjct: 437 KQLNLGGDFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNVEQVSKVPFLGDVP 496

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
            LG LFRN+    ++TE+ I   P +V      ++L R  D
Sbjct: 497 ALGHLFRNTSNVTQKTELVILLKPTVVGVNSWQKELERSRD 537


>gi|209694066|ref|YP_002261994.1| type IV pilus, mannose-sensitive hemagglutinin D (MSHD) [Aliivibrio
           salmonicida LFI1238]
 gi|208008017|emb|CAQ78154.1| type IV pilus, mannose-sensitive hemagglutinin D (MSHD) [Aliivibrio
           salmonicida LFI1238]
          Length = 546

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 98/271 (36%), Gaps = 31/271 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           + QV L+  + EV      Q G   S   ++ G +        G            G L 
Sbjct: 267 QRQVILEAKLLEVTLSDGYQQGINWSNLTAAVGGTDIVFGQVPGTTAGVLPGMDAIGSLL 326

Query: 252 --------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                      +F  VL  ++    +  L+ P +TA + Q A    G    + T  SS  
Sbjct: 327 GGQTNITVSDGNFSAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGRDEYFVTEVSSVT 386

Query: 304 AT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIG 342
                       ++T    G+ L  TP +   G + L +   V +            V G
Sbjct: 387 GNGDNSNASPEVTLTPFFSGISLDVTPQIDDKGNVMLHVHPSVIDVETETKIIDLGDVGG 446

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           V    +    +R++D+ +   SG  +V+ GL+K         +P L  IP+LG LFRN  
Sbjct: 447 VLELPLAKSSIRESDSVIRAKSGDVVVIGGLMKSQTVDQVSKVPFLGDIPVLGHLFRNVS 506

Query: 403 FNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
               +TE+ I   P +V       +L R  D
Sbjct: 507 QLTTKTELVILLKPTVVGVDTWQEELERSRD 537


>gi|238019550|ref|ZP_04599976.1| hypothetical protein VEIDISOL_01419 [Veillonella dispar ATCC 17748]
 gi|237864249|gb|EEP65539.1| hypothetical protein VEIDISOL_01419 [Veillonella dispar ATCC 17748]
          Length = 421

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 124/278 (44%), Gaps = 15/278 (5%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  ++ T+  + +   LSE                + ++N ++     QV L+ TI  + 
Sbjct: 154 LSNIMGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLINAVD-KEPKQVQLEATIIAME 212

Query: 207 RDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           +   K+ GF+ S    TG     + S+ A   GK           G   +F  +  L  +
Sbjct: 213 QSYAKEQGFRWSWLSLTGHGEDKTNSYGAVTFGKTP--------GGEAYKFFVKPELSLM 264

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPT 321
           E +     +A+P++ A++G++A    G +      S   G    S    + G+ L++TP 
Sbjct: 265 ESSGKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPI 324

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           + + G +  +I  EVS P++ V+         R+A T V L  G  +V+ GL+ +  Q  
Sbjct: 325 ITADGGVDAKIHAEVSTPIM-VSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQ 383

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + IP+L  IP+LG LFR+SR  ++  E+ I     +V
Sbjct: 384 IQKIPILGDIPLLGKLFRHSRKTKDSIEMLILVRANVV 421


>gi|95931255|ref|ZP_01313974.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132691|gb|EAT14371.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
          Length = 665

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 121/344 (35%), Gaps = 38/344 (11%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
             D   L  TL   ++         S      G +            ++   +    N  
Sbjct: 293 NADAEELSKTLNEILSGIKKPATSSSAAAGGKGTIPAAAIQTNVTVSADKPTNALVINAT 352

Query: 177 ANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFA 231
                  K ++  L+I    QV ++  I E+  D  + +G Q       G+    + S  
Sbjct: 353 PEDYVIIKDIIKQLDIR-RKQVYVEALIMELSMDATEALGSQLQGAFEVGNEGIVNLSSN 411

Query: 232 ADFGG------KFVSEGGDFSVKGVLDRF----------------SFETVLHALERATAI 269
           +  GG        ++   +  + G   +                 +F  ++   +  T +
Sbjct: 412 SAPGGILSDPESLLTTSVNGLLAGGFSKLIGVDTDGDGVDDSQVTAFSALIKLSKDDTNV 471

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTV--SSSTGA------TSVTTHDYGVVLHFTPT 321
             L+ P L     + A    G      T   + STG+       SV   D  + L FTP 
Sbjct: 472 NILSAPRLLTSDNEEAEIVVGRNVPIITSRLTDSTGSDSLAQSVSVERKDVALTLRFTPQ 531

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           +     + L +  E ++    V   +   P++  RK   TV    G T+VL GL+  + Q
Sbjct: 532 ITEGELVRLNVYQETTDLTDSVGDVNSVGPTFTTRKISNTVLARDGQTVVLGGLISTNQQ 591

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +    +PLL  IP+LG LF++      +T + +  TP ++  + 
Sbjct: 592 ETISKVPLLGDIPLLGWLFKSKDNKEVKTNLLVFITPTIISDME 635


>gi|146305583|ref|YP_001186048.1| type IV pilus secretin PilQ [Pseudomonas mendocina ymp]
 gi|145573784|gb|ABP83316.1| type IV pilus secretin PilQ [Pseudomonas mendocina ymp]
          Length = 706

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 102/286 (35%), Gaps = 36/286 (12%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
           + Q      ++++  L+I    QV ++  I E   D  K +G +   +  +     S   
Sbjct: 419 QTQERLDELRRIVAQLDIP-VRQVMIEARIVEANVDYDKALGVRWGGSVRNGAWDVSGKD 477

Query: 233 DFGG-----------------------------KFVSEGGDFSVKGVL-----DRFSFET 258
              G                              FV  G   S  G+           + 
Sbjct: 478 GVQGFDKDTGVRAPFVGTDTIGRTTLEDGLARLPFVDMGVQNSTSGIAIGYLGSNIVLDL 537

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            L A+E+      +++P +     ++A    G +  Y+  SSS  ATS +  +  + L  
Sbjct: 538 QLSAMEKTGNGEIVSQPKVVTSDKETAKILKGQEVPYQEASSSG-ATSTSFKEAALALEV 596

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           TP +    RI + ++     P        +P     + +  V +  G TIV+ G+  +  
Sbjct: 597 TPQITPDNRIIMEVKVTKDAPDFANLVNGVPPLNKNEVNAKVLVNDGETIVIGGVFSNTQ 656

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
               E +P L  +P LG +FR       + E+ +  TP ++   A+
Sbjct: 657 TNAVEKVPFLGDLPFLGRVFRRDIVRDNKAELLVFITPRIMNNQAI 702


>gi|326572695|gb|EGE22682.1| general secretion pathway protein D [Moraxella catarrhalis BC8]
          Length = 428

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 118/280 (42%), Gaps = 18/280 (6%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +I DS    ++S   +     N +  +   +++  L++  + Q+ ++  I E+     K 
Sbjct: 122 SISDSVAVADISSNAVIVRNDNAFDFA---QIIKSLDV-NKKQILIQAVILELSDTDTKN 177

Query: 213 IGFQHSITGSSS------GPSKSFAADFGGK--FVSEGGDFSVKGVLDRFSFETVLHALE 264
           +G Q +    +        P+ S      G       G  F  K       +  VLHALE
Sbjct: 178 LGVQWAAGNGAGYGVVNFNPAVSLTNALAGNKSLSVLGALFGYKKNDGNKFYGAVLHALE 237

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGVVLHFTP 320
             +    L+ P++ ++  ++AS   G      T S          +++  D G+ L  TP
Sbjct: 238 HTSNANLLSMPSVLSLDNEAASILIGQNIPVITGSQLDRNGEPFKTISRLDVGISLKVTP 297

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            +    RI +++  EVS  V   N G +        DT +   +G  IVL GL++D+   
Sbjct: 298 QITDDNRINMKVYQEVSNVVNTTNDGVV--TNKSVIDTNILSGNGEVIVLGGLMRDETTT 355

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +G+P LSK+P LG  F+    + +++ + I   P ++ 
Sbjct: 356 TVQGVPKLSKLPFLGKAFKADLDSAKKSNLVIFLQPTIID 395


>gi|242281104|ref|YP_002993233.1| general secretion pathway protein D [Desulfovibrio salexigens DSM
           2638]
 gi|242123998|gb|ACS81694.1| general secretion pathway protein D [Desulfovibrio salexigens DSM
           2638]
          Length = 671

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 104/250 (41%), Gaps = 23/250 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------ADFGGKFVSEGG 243
           +DQV ++  + E   D  K+ G +        G   +           + +     +  G
Sbjct: 371 QDQVYIEALVLETTLDHAKEFGVEWQGGIDLGGSVATLGYTKAKDSNLSAYASNPSNVPG 430

Query: 244 DFSVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
            +S+  + D  S           +++  + AT    ++ P +  +    A    G    Y
Sbjct: 431 GYSMGVLGDTISYAGRSFPTIGALVNFTKSATDFNLISAPQIMTLDNAEAEIFVGQNRPY 490

Query: 296 KTVSSSTGA----TSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           KT  SST      ++    D G+ L  TP +    G + L++    +      +  ++P 
Sbjct: 491 KTGQSSTSGDAVVSTYEYKDVGIKLKITPRINREDGLVKLKVYQTYNTVSE-ASTTELPI 549

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              RK DTTV L  G T+V+ GL++ D  + + G+P LS +P+LG LF+ +  +  +  +
Sbjct: 550 TNDRKTDTTVLLADGSTMVIGGLIRADHTRTEAGVPYLSDLPLLGWLFKTTSNSGNKNTL 609

Query: 411 FIAATPFLVK 420
            +  +  +++
Sbjct: 610 MVFLSARIIQ 619


>gi|325917654|ref|ZP_08179848.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536118|gb|EGD07920.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 616

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 105/272 (38%), Gaps = 34/272 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           +++++ ++    DQV ++  I        + +G +  I G       +            
Sbjct: 340 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIAGRQQYGGNTGVISGSTTNNVS 398

Query: 230 --------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                         F    G    +  G  +   +   F+ +  L A++       ++ P
Sbjct: 399 ILNNGIHNVPGGLNFNLPAGTFTTNTAGAIAYTLLGRNFALDMELSAMQEEGRGEVVSNP 458

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            +   + +      G +  Y T+S    +     +V   +  + L  TPT+ +  R+ L 
Sbjct: 459 RIVTSNQREGVIKQGREIGYVTISGGGASGQSQANVQFKEVLLELKVTPTITNDNRVFLN 518

Query: 332 IQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           +  +  E    +N    G +P    R+ +T V +  G T+V+ G+ +   ++    +P L
Sbjct: 519 MNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESIAKVPFL 578

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 579 GDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 610


>gi|171318673|ref|ZP_02907818.1| type IV pilus secretin PilQ [Burkholderia ambifaria MEX-5]
 gi|171096140|gb|EDT41064.1| type IV pilus secretin PilQ [Burkholderia ambifaria MEX-5]
          Length = 553

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 17/250 (6%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAE----VRRDILKQIGFQHSITGSSSG---------PSKS 229
            +++ ++     QV ++  I E      R++  ++  +      ++           +  
Sbjct: 275 GLIDAIDRP-SRQVRIEARIVEGEQGFSRNLGARVALRAQGRAPAADGAASASDTRNALD 333

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            AA   G F +    F++         +  L ALE     + ++ P +       A    
Sbjct: 334 LAARPLGGFEAATAGFTLFAAPLSRVLDVELSALEAQGRGQIISSPRVVTADRVKAIVEQ 393

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
           G +  Y+      G + V      + L   P +   GR+ L +  +V++  IG      P
Sbjct: 394 GSELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGP 450

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   +   T VE+ +GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E
Sbjct: 451 AIHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSE 510

Query: 410 IFIAATPFLV 419
           + +  TP +V
Sbjct: 511 LVVFITPTVV 520


>gi|50086334|ref|YP_047844.1| putative outer membrane protein (ComQ) [Acinetobacter sp. ADP1]
 gi|12642803|gb|AAK00351.1|AF329876_7 putative outer membrane protein ComQ [Acinetobacter sp. BD413]
 gi|49532310|emb|CAG70022.1| putative outer membrane protein (ComQ) [Acinetobacter sp. ADP1]
          Length = 723

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 115/325 (35%), Gaps = 38/325 (11%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
           + +  VE + D+V   G + + + +      + T +      +      +K+++LL+I  
Sbjct: 405 NGSATVEPLGDSV---GTLLSPRGTISLDPRTNTLIINDTSQKIDQ--IRKMIDLLDIP- 458

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---------------------- 230
             QV ++  I        K++G +  I       + +                       
Sbjct: 459 VKQVMIEARIVRATTSFSKEMGVKWGILSQGINQNSNLLVGGSETTLWNLRNPDSNGTYT 518

Query: 231 -------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                    D G               L  F  +  L AL+       ++ P + +   Q
Sbjct: 519 IERPDNLNVDLGVTTTGASSIAFGLISLSDFMLDLELSALQADGYGEVISTPKVMSADKQ 578

Query: 284 SASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   +G +  Y++ ++S   ++   +  +  + L  TP +   G+I + +         
Sbjct: 579 KAKVATGVEVPYQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMELNIANDSINS 638

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
               G+         +T V + +G T+VL G+ +         +P L  +P +G LF+ +
Sbjct: 639 YAQNGEA-ILNKNTINTNVLVNNGETVVLGGVFEQTTNNAVTKVPFLGDLPYVGRLFKKT 697

Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426
             +  + E+ I  TP +V    + +
Sbjct: 698 AKSEAKNELLIFVTPRIVNDTIVGN 722


>gi|308274907|emb|CBX31506.1| hypothetical protein N47_E50180 [uncultured Desulfobacterium sp.]
          Length = 718

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 120/341 (35%), Gaps = 43/341 (12%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH--GMVRTIQDSQRAVELSETFLSQSGRN 174
             D   L   L+  +     +    + +V     G+  T   +  A+ +  T        
Sbjct: 284 NADAVELAKVLQDLVKAGQSKQPAAAMSVFETAGGIAITADKASNALVVVATPADYQNLQ 343

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------PSK 228
           Q      K+           QV ++  IAEV  D L ++G +     + +G         
Sbjct: 344 QIIKKLDKR---------RKQVFVEAMIAEVSIDKLLELGSKWRAAVTRNGEPIFVGGVG 394

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFS-----------------FETVLHALERATAIRT 271
           +  A      +S     ++ G+ + F+                    +    +   A+  
Sbjct: 395 TVDAATVNSILSGMTGLTLGGMSNYFTVPQTFVAGGTSDIKVPGITALFSMSDFKDAVNV 454

Query: 272 LAEPTLTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
           L+ P +       A    G              ++ST  TS+   D G++L   P +   
Sbjct: 455 LSTPQILTSDNMEAEILVGENIPLILNRERDVTTTSTVLTSIERKDVGILLKIKPQINEG 514

Query: 326 GRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             + L I  E+S    G         P+   R   T+V +    T+V+ GL+++  ++  
Sbjct: 515 EYVKLDIYQEISAQKAGSENVITSIGPTMTKRSTKTSVAVKDKQTVVIGGLMQERDEESI 574

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
             IPLL  IP LG LF+    +R +T + +  TP+++   +
Sbjct: 575 TKIPLLGDIPGLGWLFKYRSISRAKTNLLVFLTPYIINDSS 615


>gi|254497667|ref|ZP_05110447.1| type IV pilus (Tfp) assembly protein PilQ [Legionella drancourtii
           LLAP12]
 gi|254353104|gb|EET11859.1| type IV pilus (Tfp) assembly protein PilQ [Legionella drancourtii
           LLAP12]
          Length = 652

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 103/251 (41%), Gaps = 28/251 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------GSSSGPSK------- 228
           + ++  L++    QV ++  I EV +D  + +G +  ++      G+  G ++       
Sbjct: 405 RALIKQLDVP-VKQVLIEARIVEVSKDFARDLGIRWGVSKPNHLSGTLQGANQMEQGTAP 463

Query: 229 ------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                          A             ++  + D    +  L ALE       ++ P 
Sbjct: 464 ANVNPYTQRLNLDLVAAPATGMTPASVGIALAKLGDNILLDLELSALESEGRAELISSPR 523

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L   + Q A   SG +  Y+  S+S+GAT+V      + L  TP +    +I + ++   
Sbjct: 524 LITTNQQPAVIDSGQEIPYQE-STSSGATAVAFKKAVLSLRVTPQITPDSKILMDLKINQ 582

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                 +    +P+   ++  T V + +G TIVL G+ + D  +    IP L ++P++G 
Sbjct: 583 DTASTQL-FNGVPAILTKEIQTNVLVSNGQTIVLGGIYQQDKSRTITRIPFLGQLPVVGN 641

Query: 397 LFRNSRFNREE 407
           LFRN++    +
Sbjct: 642 LFRNTQIVINK 652


>gi|297180471|gb|ADI16685.1| type II secretory pathway, component puld [uncultured gamma
           proteobacterium HF0010_05D02]
          Length = 666

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 120/313 (38%), Gaps = 38/313 (12%)

Query: 148 HGMVRTIQDSQRAVELSETFLS-QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
            G  R    ++  +E  E   S     +    ++ + V+  L+I    QV ++  I E+ 
Sbjct: 299 SGRTRAANAAKSTIEADEGTNSLIITADTDEMAALEAVIARLDIR-RAQVLVEAIIVEID 357

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAA--------------------------DFGGKFVS 240
               +++G Q      S     + +                           D  G    
Sbjct: 358 VTEGRELGLQWLFANDSGLYGSNISPARQGSNAAIAQAILPEDAASTEIGVRDLAGALSQ 417

Query: 241 EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             G     GV+D   +  T+L+ LE+      L+ P+L  +  + A  T G Q  + T S
Sbjct: 418 VPGTTFGWGVVDENLTMTTILNTLEKQGNTNILSTPSLLTLDNEEAFITVGQQVPFVTGS 477

Query: 300 SSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +             ++   + GV L  TP +     + + I  EVS       +     
Sbjct: 478 YTNTGAANGVANPFQTIQRENVGVTLQVTPQINEGDSVVMDIVQEVSSISQQALSASDVI 537

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              RK +T V    G  +VL GL+KDDIQ  ++G+PLLS IP++G LFRN   +  ++ +
Sbjct: 538 TNERKIETKVLAKDGDIVVLGGLVKDDIQDSQQGVPLLSGIPVVGRLFRNDVVSVTKSNL 597

Query: 411 FIAATPFLVKPVA 423
            +     +++   
Sbjct: 598 LVFIRSTIIRDDD 610


>gi|149174476|ref|ZP_01853102.1| Type IV pilin multimeric outer membrane protein [Planctomyces maris
           DSM 8797]
 gi|148846586|gb|EDL60923.1| Type IV pilin multimeric outer membrane protein [Planctomyces maris
           DSM 8797]
          Length = 799

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 112/265 (42%), Gaps = 27/265 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            +++  ++I    QV ++  I  V  +   + G   ++ G   G +K+   D  G  ++ 
Sbjct: 435 DRLLEKMDIP-PMQVVIEAMILSVALNDDMKFGVNFAMLG---GNNKNLVVDGNGNTLNN 490

Query: 242 G---------------GDF--SVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAIS 281
                           G F   V G+   F        + ALE  T    +A P L A++
Sbjct: 491 ASGFPGSGSSSIVPPTGQFIADVAGLKYGFLHGDISGFIEALEDVTETNLIASPQLRALN 550

Query: 282 GQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            Q A    G +  Y TV+ +   +  +V   D G+VL+  P +   G+I + +  E S  
Sbjct: 551 KQKAELIIGDRISYSTVTQNGNTSIQNVNFLDSGIVLNLRPFITPDGQIRMEVHPERSSA 610

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            I  +   +P  R  +  T V +  G T+V+ GL+++     +  +P L  +P++G  FR
Sbjct: 611 TINPSTN-LPDLRTTEVTTNVMVRDGHTVVIGGLIEERTSDTRNQVPFLGALPVIGNAFR 669

Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424
             R     TE+ +  TP +V+  A 
Sbjct: 670 QQREITNRTELIVLITPRIVRAEAA 694


>gi|221213453|ref|ZP_03586428.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD1]
 gi|221166905|gb|EED99376.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD1]
          Length = 571

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 16/242 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------SGPSKSFAADFGGK 237
               QV ++  I E  +   + +G + ++                 +  +   AA     
Sbjct: 300 RPSRQVRIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAAASPAGARTALDLAARPLAG 359

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F +    F++         +  L ALE     + ++ P +       A    G +  Y+ 
Sbjct: 360 FDAATAGFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ- 418

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                G T V      + L   P +   GR+ L +  +V++  +G      P+   +   
Sbjct: 419 AKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQ 476

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T VE+  GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  TP 
Sbjct: 477 TRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPT 536

Query: 418 LV 419
           +V
Sbjct: 537 IV 538


>gi|254229258|ref|ZP_04922676.1| pilus (msha type) biogenesis protein mshl, putative [Vibrio sp.
           Ex25]
 gi|151938182|gb|EDN57022.1| pilus (msha type) biogenesis protein mshl, putative [Vibrio sp.
           Ex25]
          Length = 547

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 113/281 (40%), Gaps = 32/281 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ + +     + QV L+  I EV  +   Q G   S   +S G S S   +     +  
Sbjct: 259 REFLGVSQERMQRQVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSVVVNRPASALPP 318

Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                   GG  +V   +   +F  VL  +     +  L+ P +TA + Q +    G   
Sbjct: 319 LDAIGTLLGGQTNVT--ISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDE 376

Query: 294 LYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPV 340
            + T  SS               +T    G+ L  TP + + G + L +     EVSE V
Sbjct: 377 YFVTELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVSEEV 436

Query: 341 IGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             +N G         +    +R++D+ +    G  +V+ GL+K   ++L   +P L  +P
Sbjct: 437 KKLNLGGEFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVP 496

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
            LG LFRN     E+TE+ I   P +V      ++L R  D
Sbjct: 497 ALGHLFRNVNNVTEKTELVILLKPTVVGVNSWQKELERSRD 537


>gi|308094739|ref|ZP_05891643.2| msha biogenesis protein mshl [Vibrio parahaemolyticus AN-5034]
 gi|308095427|ref|ZP_05905786.2| msha biogenesis protein mshl [Vibrio parahaemolyticus Peru-466]
 gi|308125606|ref|ZP_05776206.2| msha biogenesis protein mshl [Vibrio parahaemolyticus K5030]
 gi|308126551|ref|ZP_05910862.2| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ4037]
 gi|308087223|gb|EFO36918.1| msha biogenesis protein mshl [Vibrio parahaemolyticus Peru-466]
 gi|308093091|gb|EFO42786.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AN-5034]
 gi|308109580|gb|EFO47120.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ4037]
 gi|308111201|gb|EFO48741.1| msha biogenesis protein mshl [Vibrio parahaemolyticus K5030]
          Length = 530

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/281 (23%), Positives = 113/281 (40%), Gaps = 32/281 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ + +     + QV L+  I EV      Q G   S   +S G S S   +     +  
Sbjct: 242 REFLGVSQERMQRQVILEAKILEVTLSDGYQQGINWSNLSASIGNSGSIIVNRPASALPP 301

Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                   GG  +V   +   +FE VL+ +     +  L+ P +TA + Q +    G   
Sbjct: 302 LDAIGTLLGGQTNVT--ISDGNFEAVLNFMSTQGDLNVLSSPRITAANNQKSVIKVGTDQ 359

Query: 294 LYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPV 340
            + T  SS               +T    G+ L  TP + + G + L +     EV+E V
Sbjct: 360 YFVTELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEV 419

Query: 341 IGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             +N G         +    +R++D+ +    G  +V+ GL+K    +    +P L  +P
Sbjct: 420 KQLNLGGDFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNVEQVSKVPFLGDVP 479

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
            LG LFRN+    ++TE+ I   P +V      ++L R  D
Sbjct: 480 ALGHLFRNTSNVTQKTELVILLKPTVVGVNSWQKELERSRD 520


>gi|319791917|ref|YP_004153557.1| type IV pilus secretin pilq [Variovorax paradoxus EPS]
 gi|315594380|gb|ADU35446.1| type IV pilus secretin PilQ [Variovorax paradoxus EPS]
          Length = 713

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 105/274 (38%), Gaps = 41/274 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------------------- 220
           +++  L+I    QV ++  I E      K +G +                          
Sbjct: 437 ELIQKLDIP-VRQVLIEARIVEASDTFGKSLGVRLGGGISRERVASANGNPAYGTLGVMP 495

Query: 221 -------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALER 265
                          ++    +  A   G   +  G F++       S      + ALE 
Sbjct: 496 ATTNGGGVGGAAATWTNSNFINLPAGDAGGTGNTPGAFAISLFNSSLSRMLNLEISALEA 555

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + ++ P +       A    G +  Y+  +SS GATS++     + L  TP +   
Sbjct: 556 DGKGKLVSSPRVITADQTKALIEQGEEIPYQQATSS-GATSISFRKAVLKLEVTPQITPE 614

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G I L +  +VS+   GVN    P+   +   T V + +GGT+V+ G+ +      +  +
Sbjct: 615 GNIILTL--DVSKDARGVNTSAGPAINTKHVQTEVLVENGGTVVIGGIFELTETNDESRV 672

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P+L +IP +GALFR       +TE+ +  TP ++
Sbjct: 673 PVLGEIPYMGALFRKRERVANKTEMLVFITPKMI 706


>gi|21244106|ref|NP_643688.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109733|gb|AAM38224.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 633

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 108/272 (39%), Gaps = 34/272 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------SSGPSKS--- 229
           +++++ ++    DQV ++  I        + +G +  I G           SG S +   
Sbjct: 357 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIAGRRQYGDNTAVISGSSTNNVS 415

Query: 230 --------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                         F    G    +  G  +   +   F+ +  L A++       ++ P
Sbjct: 416 VINDGLHNVPSGLNFNLPAGTFTTNTAGSIAYTLLGRNFALDMELSAMQEEGRGEVVSNP 475

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            +   + +      G +  Y T+S          +V   +  + L  TPT+ +  R+ L 
Sbjct: 476 RIVTANQREGVIKQGREIGYVTISGGGTGGQSQANVQFKEVLLELKVTPTITNDNRVFLN 535

Query: 332 IQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           +  +  E    +N    G +P    R+ +T V +  G T+V+ G+ + + ++    +P L
Sbjct: 536 MNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFNDRESVAKVPFL 595

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 596 GDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 627


>gi|94267441|ref|ZP_01290880.1| type II and III secretion system protein:Secretin/TonB, short-like
           [delta proteobacterium MLMS-1]
 gi|93452009|gb|EAT02711.1| type II and III secretion system protein:Secretin/TonB, short-like
           [delta proteobacterium MLMS-1]
          Length = 555

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 125/323 (38%), Gaps = 49/323 (15%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTI 202
           ++ G  R  +D  +A ++     S     +      ++V   L+   E    QV L+  I
Sbjct: 206 MIVGTDRGREDGSQARQVIVNSKSGLVMVRALPGELREVETFLDALLENALRQVMLEAKI 265

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----GDFSVKGV------- 250
            EV  D   Q G       +S      F    GG  + +G     G+    GV       
Sbjct: 266 IEVELDEAFQSGINWGQLATSGSGEWQFGQIGGGTVLDDGVSAIAGNTGNIGVDNFDPID 325

Query: 251 --------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                          DR +F   +  L+    +  L+ P +   + Q A    G    + 
Sbjct: 326 GTATSAFGGVFTMAADRSNFHAFIELLKTQGDVHVLSSPRVATTNNQKALIKVGNDEYFV 385

Query: 297 TVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           T  S +  T+           +T    G+ L  TPT+     + L I+  VS+      +
Sbjct: 386 TDVSFSTRTTGTDDTIYPDLELTPFFSGIALDVTPTITDGNEVILHIRPSVSQVRDQTKS 445

Query: 346 GDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
             +            R+R++D+ V   SG  I++ GL++D  ++ + G+P L  +P++G 
Sbjct: 446 FTVAGQTQSLPLALSRMRESDSIVRARSGQVIIIGGLMEDSWREQRAGLPGLGDLPLVGN 505

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFR  R+++ +TE+ I   P +V
Sbjct: 506 LFRQQRWSQRKTELVILLRPVVV 528


>gi|294012342|ref|YP_003545802.1| type II secretory pathway component PulD [Sphingobium japonicum
           UT26S]
 gi|292675672|dbj|BAI97190.1| type II secretory pathway component PulD [Sphingobium japonicum
           UT26S]
          Length = 726

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 135/346 (39%), Gaps = 23/346 (6%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
              I      ++R + ++  +++   + V++  ++  I D+       +  +  +     
Sbjct: 334 NAIIVAANSDVQRMLGETIRQIDTRREQVLVEAIIVEISDAAAKKLGVQFLIGSTKTGFA 393

Query: 177 ANSSSKKVMNLLNIAGE-DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
           A + S    N+L +AG      L  T   V      +   +    G  +   +  A D  
Sbjct: 394 ATNYSNASPNILTLAGAIAADRLGETTTTVVAPDGTRTETRTRENGDLANTLQQAAVDSL 453

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
               + G       +     F  +++A++  T    L+ P++  +  Q AS   G Q   
Sbjct: 454 MN-ATGGFGGVATSLGRNGIFGAIINAVKSDTDSNILSTPSVMTLDNQKASILVGQQVPV 512

Query: 296 KTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP- 349
            T  +          +V   D G+ L   P + + G I L ++ EVS     V+  +   
Sbjct: 513 TTGEALSQNFDNQFRTVQRQDVGIKLEVKPQINTGGAIKLFLKQEVSSVAGPVSNNNSDL 572

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R+ +TTV +  G  + L GLL D+ ++  E IPLLS IP LG LF++   +R +T 
Sbjct: 573 IINKREIETTVTVDDGEILALGGLLDDNERKTIERIPLLSDIPGLGELFKSRSKSRTKTN 632

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
           + +   P +++                ++DA+     R   I G +
Sbjct: 633 LMVFIRPTILR---------------SKEDAQKLTQQRYGYIRGMQ 663


>gi|114798909|ref|YP_761208.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
 gi|114739083|gb|ABI77208.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
          Length = 694

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 12/235 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV ++ TI EV       +G Q  +       S +F     G   S     SV  +  
Sbjct: 438 KRQVLIEATIVEVSLTDGTSLGVQWDLVQDRL--SATFTDTGSGDLTSLFPGVSVSYI-- 493

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------T 305
                 V++AL   + +  ++ P +  ++ ++A    G Q    T S+ + +        
Sbjct: 494 NTDIAAVINALAATSDVEIVSSPRMLVLNNETARLQVGDQVPIITQSAVSVSDPGAPVVN 553

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPS 364
           S T  D GV+L  TP + + G + + I  EVS       +  D P+   R   + + +P 
Sbjct: 554 STTYRDTGVILTVTPRIRAGGMVEVDISQEVSGVSETTTSSIDSPTISQRSIQSVLAVPD 613

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G T VL GL+       + GIP+L   P+LGA FR++  +   TE+ +   P +V
Sbjct: 614 GSTAVLGGLMSSTRSYSRTGIPILKDTPVLGAAFRSTNQSERRTELIVLIEPTVV 668


>gi|291286428|ref|YP_003503244.1| general secretion pathway protein D [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883588|gb|ADD67288.1| general secretion pathway protein D [Denitrovibrio acetiphilus DSM
           12809]
          Length = 616

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/338 (19%), Positives = 122/338 (36%), Gaps = 36/338 (10%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKV 200
           L G V      ++A   + T    +  N      S  + + +           +QV ++ 
Sbjct: 278 LTG-VENEDKGKKASNSTSTVAFDAATNSIIVFGSPDLYSKVEGLIEKLDRPREQVYVEA 336

Query: 201 TIAEVRRDILKQIGFQHSITGSSS------------------------GPSKSFAADFGG 236
            I E   +     G +  +   +                         G S +F A   G
Sbjct: 337 LIIETSIENGSDFGVEWQVGAGNDSQAGTIGYLGSDGALTSFQSSVLDGDSPNFGALSSG 396

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +   GD      +   +   + + ++ A+ I  L+ P +  +  + A    G    + 
Sbjct: 397 FNLGILGDIVTYEGVSFPTLGILANFVKTASGINILSNPQILTLDNEEAEIFVGENRPFL 456

Query: 297 TV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
           T     S++    S    D GV L+  P + S   I L+I+ EV +          P   
Sbjct: 457 TSTKYDSNNNPVQSYDYRDVGVKLNIVPQISSNDTITLKIEQEVKKVSGATADVVAPVTL 516

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   T V+L  G  +V++GLLKDD +     +P LS IP++G LF+N   + E+T + +
Sbjct: 517 TRSTKTKVKLKDGAIMVISGLLKDDSETYNSSVPWLSSIPVIGWLFKNKNSSSEKTNMMV 576

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
             +  +++          +   +     K    N++ K
Sbjct: 577 FISTSIIR-TQEDAKKLTEKKQNESSTFKEEIDNKIQK 613


>gi|163802893|ref|ZP_02196781.1| MSHA biogenesis protein MshL [Vibrio sp. AND4]
 gi|159173300|gb|EDP58126.1| MSHA biogenesis protein MshL [Vibrio sp. AND4]
          Length = 531

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/278 (21%), Positives = 106/278 (38%), Gaps = 27/278 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ + +     + QV L+  I EV      Q G   S   +S G S S   D     +  
Sbjct: 244 REFLGVSQERMQRQVILEAKILEVTLSDGYQQGIDWSNMSASIGNSGSIVVDRSPLSLPL 303

Query: 242 GGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
               ++ G          +F+ V++ +     +  L+ P +TA + Q +    G    + 
Sbjct: 304 DAIGTLLGGQTNVTFSDGNFKAVMNFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFV 363

Query: 297 TVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--- 343
           T  SS               +T    G+ L  TP +   G + L +   V E    +   
Sbjct: 364 TELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEIKKL 423

Query: 344 ------NAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                 N   +P     +R++D+ +    G  +V+ GL+K    +    +P L  +P LG
Sbjct: 424 NLGGEFNNVQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALG 483

Query: 396 ALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
            LFRN     ++TE+ I   P +V      ++L R  D
Sbjct: 484 NLFRNINNVTQKTELVILLKPTVVGVNTWQKELERSRD 521


>gi|289547821|ref|YP_003472809.1| type II and III secretion system protein [Thermocrinis albus DSM
           14484]
 gi|289181438|gb|ADC88682.1| type II and III secretion system protein [Thermocrinis albus DSM
           14484]
          Length = 575

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 33/256 (12%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFG------------- 235
             +V+++  I E+R + L+++G   ++  SS+      S    ++ G             
Sbjct: 322 PVRVSIEARIVEIREEALRELGINWNMLLSSARLPEAWSGGVGSNIGIGSPPTPGNLFLT 381

Query: 236 ------GKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                 G   + GG  ++    G+++  +    + ALER    ++LA+PT+ AI+GQ A+
Sbjct: 382 PPYLQPGLSPNPGGILTLTYQKGIINALNL--RISALERVNLAKSLAKPTIVAINGQKAT 439

Query: 287 FTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
              G Q  Y T +   G T   ++   D  + L  TP V   GRI L +   ++   +GV
Sbjct: 440 IKQGVQVPYLTAAVGAGGTAVPNIQFKDVVLQLDVTPIVSPDGRILLDL--SLTRDTLGV 497

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P+   ++  T V + +G T+V+ G++ +      EGIP   ++P+L  LF   R 
Sbjct: 498 QTPQGPAINKKEVRTKVIVENGQTLVIGGVIDNQSYTTNEGIPGFVRVPLLKYLFGQERL 557

Query: 404 NREETEIFIAATPFLV 419
           N+ +TE+ I  TP ++
Sbjct: 558 NKSDTELLIFITPTVL 573


>gi|327480391|gb|AEA83701.1| general secretion pathway protein D [Pseudomonas stutzeri DSM 4166]
          Length = 644

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 111/267 (41%), Gaps = 26/267 (9%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            + + ++  L+I    QV ++  I EV  DI   +G Q +I  +      +   +FG   
Sbjct: 330 GTMESIVRQLDIP-RAQVMVEAAIVEVSGDITDALGVQWAI-DARGSTGGAGGVNFGNTG 387

Query: 239 VSEGGDFSVKGV--------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           +S G   +                  +   SF  ++ AL   +    L+ P+L  +  Q 
Sbjct: 388 ISVGSVLNAINKNEIPNNLPDGAIIGVGTRSFGALITALSSNSKSNLLSTPSLLTLDNQE 447

Query: 285 ASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           A    G    ++T S +T A       T++   D GV L  TP +     + L+I+ E+S
Sbjct: 448 AEILVGQNVPFQTGSYTTDAAGANNPFTTIERQDIGVTLKVTPHINEGATLRLQIEQEIS 507

Query: 338 EPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                 +            R   +T+    G  IVL GL++DD+ +    +PLL  IP+L
Sbjct: 508 SIAPSASLTAQAVDLVTNKRAIKSTILAEDGQVIVLGGLIQDDVTRTNSKVPLLGDIPLL 567

Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421
           G LFR+++    +  + +   P +++ 
Sbjct: 568 GGLFRSTQETHIKRNLMVFLRPTVIRD 594


>gi|294638088|ref|ZP_06716347.1| protein transport protein HofQ [Edwardsiella tarda ATCC 23685]
 gi|291088796|gb|EFE21357.1| protein transport protein HofQ [Edwardsiella tarda ATCC 23685]
          Length = 400

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 7/237 (2%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +  L++    Q+ L   I  + ++ L+++G +     +S G  +    +    F +    
Sbjct: 166 VTQLDVPLP-QIQLAAHIVSMSQEGLRELGIRWRNGTASEGEHEVRRREDEAYFSAGIQV 224

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
             + G     +    L ALER   +  +A P L A  GQ AS   G +  Y   +   G 
Sbjct: 225 AHIGGQ----ALAMTLAALERQDKVAIIASPQLMAAHGQMASIKQGSELPYAVSNGERGV 280

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVEL 362
           +++   +  + +  TP VL+  RI L +Q   + P   V  GD  +     ++  T V L
Sbjct: 281 STMEFKEAVLGMSVTPRVLADERIELALQITQNMPGRLVRQGDSEALAIDKQEISTQVTL 340

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P+G T VL G+ +   Q   EG P L+ IP+LG L R      E  E+ I  TP L+
Sbjct: 341 PNGDTAVLGGIFQYQRQDGYEGFPWLASIPLLGHLLRRDSQRSERRELVIFITPTLL 397


>gi|217969316|ref|YP_002354550.1| type II and III secretion system protein [Thauera sp. MZ1T]
 gi|217506643|gb|ACK53654.1| type II and III secretion system protein [Thauera sp. MZ1T]
          Length = 625

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 82/397 (20%), Positives = 141/397 (35%), Gaps = 42/397 (10%)

Query: 103 GHDGKQMLNLDILIERDI-AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           G     +  ++     D    LE  L   +A      +   +     G       +   +
Sbjct: 210 GAGNASITQIETRSANDFWNTLEHNLAAILAGPGRAPDCGGER---RGESPAGCRNADLM 266

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
              E+ +  +   Q  +   +  +  +  A   QV ++ TI EV      + G   +  G
Sbjct: 267 LNRESGIVMARATQRQHEQLEAFLAGVQRAARRQVMIEATIVEVTLADGYRQGIDWTRLG 326

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
               PS S      G   S     S        + +  L  LE    ++ L+ P L+ ++
Sbjct: 327 V---PSWSVRPRGSGDATSGQPTLSYLSA----NSDIRLELLETFGTVKVLSSPRLSVLN 379

Query: 282 GQSASFTSGGQHLYKTVSSSTG------------ATSVTTHDYGVVLHFTPTVLSPGRIG 329
            Q+A      + +Y  V S+T              T+  +   G+V+  TP + + G I 
Sbjct: 380 NQTAMLKVVEEVVYFLVDSTTTEYDDRKQARISATTTPQSVSVGMVMSVTPQISADGDIT 439

Query: 330 LRIQTEVS---------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           L ++  +S          P +G     +P  R R+ ++ + L SG   VL GL++D I  
Sbjct: 440 LNVRPTISGISGFKDDPNPSLGDIPNRVPQIRTREIESMLRLRSGEVAVLGGLMEDRIDH 499

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR------DLSRPDDHY 434
               IPL   +P++G LF     N   TE+ I   P L+    MR          PDD +
Sbjct: 500 DTGRIPLFGDLPVVGELFTRRDNNVRRTELLIFLRPLLIDEPGMRGGYAEYAGHLPDDDF 559

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
            ++  +      + N  + P             A GF
Sbjct: 560 LLDSPS----PGQRNFPHLPLRPLLAPAGAVSAAEGF 592


>gi|118579431|ref|YP_900681.1| type IV pilus secretin PilQ [Pelobacter propionicus DSM 2379]
 gi|118502141|gb|ABK98623.1| type IV pilus secretin PilQ [Pelobacter propionicus DSM 2379]
          Length = 864

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 111/298 (37%), Gaps = 24/298 (8%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           ++E + D V+L   + TI    R   +  T +        A+     +        E QV
Sbjct: 572 QLEALLDPVLLKEKLATITADDRTNTIIVTSVQSDIDRIRAHLVKMDI-------PEKQV 624

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFV---------SEGG 243
            ++  I E      + +G    +  + +  S          FGG            S GG
Sbjct: 625 MIEARIVEATSTFTRSLGVNWGVHYTDASGSLLGITQLDTGFGGITTAPPTSGTGDSAGG 684

Query: 244 DFSV--KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           +  +    + +    +  L A   A  I+ ++ P +  ++ + A    G Q  Y   +S 
Sbjct: 685 NMGISFGALGNGVQLDMRLSAAATAGLIKIISCPKVATLNNKKAKIAQGQQIPY--TASD 742

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
                    +  + L  TP + + G I + I  +       V +   P+   ++A T + 
Sbjct: 743 GDNVETKFVEAALSLEVTPHINANGTISMNIVAKNDSMGDAVGSSTAPAINTKEATTEML 802

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  G T V+ G+  D       G+P L  IP +G  F+ +   + +TE+ +  TP ++
Sbjct: 803 LRDGETTVIGGIFVDTDNDSDAGVPFLMDIPAIGKFFKTNSKTKTKTELLVFITPRIM 860


>gi|229521807|ref|ZP_04411225.1| general secretion pathway protein D [Vibrio cholerae TM 11079-80]
 gi|229341401|gb|EEO06405.1| general secretion pathway protein D [Vibrio cholerae TM 11079-80]
          Length = 674

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 136/374 (36%), Gaps = 71/374 (18%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181
           +   L+R I   ++ +    +  V++      +D    ++ +SE   ++ G  Q   S  
Sbjct: 245 VRERLKRLIKQLDVEMATKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKR 304

Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216
            +VM       N L +                      QV ++  I E+       +G Q
Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLDVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364

Query: 217 HSITGSSSGPSKSFAADFGGKFV----------------------------SEGGDFS-- 246
                S S           G  +                            +E GD++  
Sbjct: 365 WGSLDSGSVIQYGNTGASIGNVMIGLEEAKEKTVTDSRWNSVTQTYEPYTRTESGDYTKL 424

Query: 247 ---------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                        +    +  +++A+   ++   L+ P++T +    ASF  G +    T
Sbjct: 425 ASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVIT 484

Query: 298 VSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
            SS+         +V   + G+ L   P +     + L+I+ EVS  V+G N      + 
Sbjct: 485 GSSAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSN-VLGANGAVDVRFA 543

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + +
Sbjct: 544 KRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV 603

Query: 413 AATPFLVKPVAMRD 426
              P +++     D
Sbjct: 604 FIKPTIIRDGVTAD 617


>gi|90020990|ref|YP_526817.1| Type II secretory pathway component PulD-like protein
           [Saccharophagus degradans 2-40]
 gi|89950590|gb|ABD80605.1| type II and III secretion system protein [Saccharophagus degradans
           2-40]
          Length = 546

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 125/296 (42%), Gaps = 29/296 (9%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKK------VMNLLNIAGEDQVTLKVTIAEVR 206
           + Q  Q+     +  L++ G      ++ ++       ++ +  A + QV ++ TI EV 
Sbjct: 234 SQQAEQQGASHPDILLNKEGGVMAVRATYRQHKEIQHFLSEIMFASQRQVLIEATIVEVT 293

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
                Q G   S+   +     +  A      V+   D          +    + AL+  
Sbjct: 294 LSERYQAGIDWSVLQQNVADGVTRTATQDVLDVTL-QDPVFTITHVGKNLSATVKALDTF 352

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----------SSSTGATSVTTHDYGVV 315
             +  ++ P +  ++ Q+A        +Y TV           S++T  T V T   G V
Sbjct: 353 GDVSVMSSPKVMTLNNQTALLKVVDNLVYFTVDVNIETNESGPSTTTFETEVNTVPIGFV 412

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPV----------IGVNA-GDMPSYRVRKADTTVELPS 364
           +  TP +   G + L I+  +S  +            VN   ++P  +VR+ ++ +++P 
Sbjct: 413 MSVTPFINEFGYVTLNIRPTISRVIGLKRDPNPALAQVNVVNEIPEIQVREVESVLKIPD 472

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G   ++ GL++D+    + G+P LSKIP++G LF+ +    +++E+ I   P +V 
Sbjct: 473 GEVAIIGGLMQDEQDNTEHGVPGLSKIPLVGGLFKYTDDKVKKSELVIFIKPIVVD 528


>gi|262190137|ref|ZP_06048422.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio cholerae CT 5369-93]
 gi|262033978|gb|EEY52433.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio cholerae CT 5369-93]
          Length = 675

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 135/375 (36%), Gaps = 72/375 (19%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181
           +   L+R I   ++ +    +  V++      +D    ++ +SE   ++ G  Q   S  
Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKR 304

Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216
            +VM       N L +                      QV ++  I E+       +G Q
Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364

Query: 217 HS-------ITGSSSGPS---------------------------------KSFAADFGG 236
                    I   ++G S                                  +   D+  
Sbjct: 365 WGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTEKKPIRNSETGEIKYYEETTTKGDYSK 424

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              +  G       +    +  +++A+   ++   L+ P++T +    ASF  G +    
Sbjct: 425 LASALSGLQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVI 484

Query: 297 TVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           T S++         +V   + G+ L   P +     + L I+ EVS  V+G N      +
Sbjct: 485 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRF 543

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + 
Sbjct: 544 AKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLM 603

Query: 412 IAATPFLVKPVAMRD 426
           +   P +++     D
Sbjct: 604 VFIKPTIIRDGVTAD 618


>gi|146282151|ref|YP_001172304.1| general secretion pathway protein D [Pseudomonas stutzeri A1501]
 gi|145570356|gb|ABP79462.1| general secretion pathway protein D [Pseudomonas stutzeri A1501]
          Length = 644

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 111/267 (41%), Gaps = 26/267 (9%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            + + ++  L+I    QV ++  I EV  DI   +G Q +I  +      +   +FG   
Sbjct: 330 GTMESIVRQLDIP-RAQVMVEAAIVEVSGDITDALGVQWAI-DARGSTGGAGGVNFGNTG 387

Query: 239 VSEGGDFSVKG--------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           +S G   +                  +   SF  ++ AL   +    L+ P+L  +  Q 
Sbjct: 388 ISVGSVLNAINENEIPNNLPDGAIIGVGTRSFGALITALSSNSKSNLLSTPSLLTLDNQE 447

Query: 285 ASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           A    G    ++T S +T A       T++   D GV L  TP +     + L+I+ E+S
Sbjct: 448 AEILVGQNVPFQTGSYTTDAAGANNPFTTIERQDIGVTLKVTPHINEGATLRLQIEQEIS 507

Query: 338 EPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                 +            R   +T+    G  IVL GL++DD+ +    +PLL  IP+L
Sbjct: 508 SIAPSASLTAQAVDLVTNKRAIKSTILAEDGQVIVLGGLIQDDVTRTNSKVPLLGDIPLL 567

Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421
           G LFR+++    +  + +   P +++ 
Sbjct: 568 GGLFRSTQETHIKRNLMVFLRPTVIRD 594


>gi|262393141|ref|YP_003284995.1| MSHA biogenesis protein MshL [Vibrio sp. Ex25]
 gi|262336735|gb|ACY50530.1| MSHA biogenesis protein MshL [Vibrio sp. Ex25]
          Length = 530

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 113/281 (40%), Gaps = 32/281 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ + +     + QV L+  I EV  +   Q G   S   +S G S S   +     +  
Sbjct: 242 REFLGVSQERMQRQVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSVVVNRPASALPP 301

Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                   GG  +V   +   +F  VL  +     +  L+ P +TA + Q +    G   
Sbjct: 302 LDAIGTLLGGQTNVT--ISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDE 359

Query: 294 LYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPV 340
            + T  SS               +T    G+ L  TP + + G + L +     EVSE V
Sbjct: 360 YFVTELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVSEEV 419

Query: 341 IGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             +N G         +    +R++D+ +    G  +V+ GL+K   ++L   +P L  +P
Sbjct: 420 KKLNLGGEFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVP 479

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
            LG LFRN     E+TE+ I   P +V      ++L R  D
Sbjct: 480 ALGHLFRNVNNVTEKTELVILLKPTVVGVNSWQKELERSRD 520


>gi|124268293|ref|YP_001022297.1| fimbrial biogenesis protein [Methylibium petroleiphilum PM1]
 gi|124261068|gb|ABM96062.1| fimbrial biogenesis protein [Methylibium petroleiphilum PM1]
          Length = 721

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 102/277 (36%), Gaps = 47/277 (16%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  ++I    QV ++  I E      + +G   +  G++  PS    A  GG ++  G
Sbjct: 444 QIIARIDIP-VRQVLIEARIVEATDTFGRSLG---AKLGATVAPSSKVNAGIGGNYLGIG 499

Query: 243 GDFSVKGVLDRFSF----------------------------------------ETVLHA 262
                   ++                                               + A
Sbjct: 500 AATGQAPPINSSGLTTGTPSTNSYFVNLPAVGQNGYDAATFAVSIFNSAMNRFLNLEISA 559

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE     + ++ P +       A    G +  Y+T +SS GAT++      + L   P +
Sbjct: 560 LEADGKGKIVSSPRVVTADQVKALIEQGTEIPYQTATSS-GATAIQFRKATLKLEVIPQI 618

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
              G I L +      P     AG +     +   T V + +GGT+V+ G+ +   Q   
Sbjct: 619 TPEGNIILDVDVNKDSPGATTAAGIL--INTKHVKTQVLVDNGGTVVIGGIYEQTEQIDN 676

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +PLL  +P+LGALFR+      +TE+ +  TP +V
Sbjct: 677 TKVPLLGDVPVLGALFRSQTRTSNKTELLVFLTPKVV 713


>gi|269968038|ref|ZP_06182076.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 40B]
 gi|269827395|gb|EEZ81691.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 40B]
          Length = 546

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 113/281 (40%), Gaps = 32/281 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ + +     + QV L+  I EV  +   Q G   S   +S G S S   +     +  
Sbjct: 258 REFLGVSQERMQRQVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSIVVNRPASTLPP 317

Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                   GG  +V   +   +F  VL  +     +  L+ P +TA + Q +    G   
Sbjct: 318 LDAIGTLLGGQTNVT--ISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDE 375

Query: 294 LYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPV 340
            + T  SS               +T    G+ L  TP + + G + L +     EV+E V
Sbjct: 376 YFVTELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEV 435

Query: 341 IGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             +N G         +    +R++D+ +    G  +V+ GL+K   ++L   +P L  +P
Sbjct: 436 KQLNLGGDFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVP 495

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
            LG LFRN     E+TE+ I   P +V      ++L R  D
Sbjct: 496 ALGHLFRNVNNVTEKTELVILLKPTVVGVNSWQKELERSRD 536


>gi|253997512|ref|YP_003049576.1| type IV pilus secretin PilQ [Methylotenera mobilis JLW8]
 gi|253984191|gb|ACT49049.1| type IV pilus secretin PilQ [Methylotenera mobilis JLW8]
          Length = 719

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 3/215 (1%)

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
             +   Q    +    +SS       ++      +    +S+  V         L A+E 
Sbjct: 502 THNGAVQTTLTNGGVFTSSDGQPDLMSNLAVANAAGSIAYSIYNVAAGLLLNLELTAMET 561

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + ++ P +   +   A   +G +  Y   SSS GAT+V      + L  TP +   
Sbjct: 562 DQRGKIVSSPRVITANQHKAKIAAGTEIPYLQASSS-GATNVAFKPAVLSLEVTPQITPD 620

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            +I + +  +  +  +G     +PS   +  +T V + +G T VL G+ +   +     +
Sbjct: 621 EKIIMELDIKKDK--VGQIFNGVPSIDTQNINTQVLVGNGETAVLGGIFEQIERDDVSKV 678

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           P    +P+ G LF+      ++TE+ I  TP +V 
Sbjct: 679 PFFGDLPLFGNLFKKKTRQNDKTELLIFITPKIVD 713


>gi|220932698|ref|YP_002509606.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
 gi|219994008|gb|ACL70611.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
          Length = 602

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 120/296 (40%), Gaps = 21/296 (7%)

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
             I    I VE V   +  +     ++  +    L  T        Q   +  K+ +  +
Sbjct: 302 ELIPMEYIEVEKVPQLLPNNFPAANVKVLKEKNALLVT------GTQSDINKLKEYIKQI 355

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
           +      + ++  + E+ R+  +    +  +          +  +    F +  G  + K
Sbjct: 356 DTRIPL-IVVEAVVVELTRNRQENPVIKLGM---------EYDGEEELLFDTSMGKLTYK 405

Query: 249 GVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGA 304
            VLD    F   + AL     +   A P +T ++GQ A    G    Y   +T       
Sbjct: 406 SVLDLPDDFYLKIEALVTEGLLTVKARPNITTLNGQQAMIDVGTVQYYKVKQTDGEGNEE 465

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           T   + + GV L  TP V S G I L+++ +VS        G  P    R+ DTTV +  
Sbjct: 466 TQYQSINAGVSLTVTPWVSSSGEITLKLRPQVSNIGAAAAEGP-PQVSRREVDTTVRVKD 524

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T+V+ GL++D        +P L+ IP++G LF++   N  +TE+ I  TP ++K
Sbjct: 525 GQTVVIGGLIQDVGTNTTSKVPFLANIPLIGKLFKSRNNNVNQTELIIFITPRVLK 580


>gi|171321858|ref|ZP_02910757.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
 gi|171092856|gb|EDT38111.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
          Length = 895

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 126/312 (40%), Gaps = 30/312 (9%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            D   +   LR+ I   ++ V+   + +V+     TIQ ++R V                
Sbjct: 283 ADAKSVMAALRQMIKPKDVYVDERVNAIVMRDTPETIQVAERVVMG-------------- 328

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                     L+I  + +VTL V + EV  +    +G Q+      S    +  A     
Sbjct: 329 ----------LDIP-QSEVTLDVQVLEVNMNDSLDLGVQYPGKVQFSALGGAEGAALTLG 377

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            +       +    +       +  L++    +TLA P +   + + AS   G +    T
Sbjct: 378 DLLRMNRDRIGVSSESGGLALAIDMLQKRGKTKTLANPKIRVRNLEKASIKIGERVPIVT 437

Query: 298 VSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYR 352
            +++ G  +  V+  D G++L   P +     + +++  EVS  +            S  
Sbjct: 438 TTNANGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILSKETTKTGLVAYSLG 497

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A+T +   +G T +LAGL+K +      G+P +S +P+LG LF ++  + E +EI +
Sbjct: 498 TRNAETLMTAKNGETQILAGLVKRNESDSIAGLPGISGLPVLGRLFGSNSRSNERSEIVL 557

Query: 413 AATPFLVKPVAM 424
             TP + + + +
Sbjct: 558 LITPHIERNLDL 569


>gi|3978519|gb|AAD04923.1| PilQ [Myxococcus xanthus DK 1622]
          Length = 901

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 105/271 (38%), Gaps = 35/271 (12%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGP------- 226
           ++ ++  L+     QV ++  I E      + +G Q          TG+S+G        
Sbjct: 625 ARSLVRSLDTQTP-QVLIESRIVEANTSFSRSLGVQWGGQARAGQATGNSTGLIFPNNLA 683

Query: 227 --------------SKSFAADF---GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                         + +FA +     G+ V     F+             L A E   ++
Sbjct: 684 VTGGVTGTGAGLPDNPNFAVNLPTGTGQGVGGAMGFTFGSAGGALQLNLRLSAAENEGSV 743

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           +T++ P +T +   +A    G    +   S+     + T  +  + L  TP +   G + 
Sbjct: 744 KTISAPKVTTLDNNTARINQGVSIPFSQTSAQ--GVNTTFVEARLSLEVTPHITQDGSVL 801

Query: 330 LRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           + I    ++P      A   PS + ++A+T V +  G T V+ G+           +P L
Sbjct: 802 MSINASNNQPDPSSTGANGQPSIQRKEANTQVLVKDGDTTVIGGIYVRRGATQVNSVPFL 861

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
           S+IP+LG LF+N+       E+ I  TP ++
Sbjct: 862 SRIPVLGLLFKNNSETDTRQELLIFITPRIL 892


>gi|71280237|ref|YP_271224.1| MSHA biogenesis protein MshL [Colwellia psychrerythraea 34H]
 gi|71145977|gb|AAZ26450.1| MSHA biogenesis protein MshL [Colwellia psychrerythraea 34H]
          Length = 609

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 113/300 (37%), Gaps = 32/300 (10%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           V  G  R++  S +A  ++   L Q        ++ KK +         QV ++  I EV
Sbjct: 249 VGTGEGRSVIVSPQAGLVTVRALPQE------LTAVKKFITATESHLHRQVIIEAKIMEV 302

Query: 206 RRDILKQIGFQHSITGSSSG-------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
             +   Q G + +      G        + +   +     +      +         F  
Sbjct: 303 TLNDDFQQGIKWNKVLDQVGSADIIYSTTGNVVGNVISNTIGGVNSINFSKQTSGSDFSG 362

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----------VSSSTGATSVT 308
           V+  L+    ++ L+ P +TA + Q A    G    + T           +++T    +T
Sbjct: 363 VIELLQTQGNVQVLSSPRITATNNQKAVIKVGEDEYFVTEVSSTTTTGTSTTTTPEVELT 422

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS-------EPVIGVNAGDMP--SYRVRKADTT 359
               G+ L  TP +   G + L +   V+          IG     +P     VR++DT 
Sbjct: 423 PFFSGIALDVTPQISKDGSVILHVHPSVTITEEQSKTIKIGDTTLVLPLAQSSVRESDTI 482

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +   SG  +V+ GL++     ++   P+L  IP LG LF+N     ++ E+ I   P +V
Sbjct: 483 IRANSGEVVVIGGLIETYNIDIESKTPILGDIPYLGELFKNKSQKSQKRELVIMLKPIVV 542


>gi|296123515|ref|YP_003631293.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
 gi|296015855|gb|ADG69094.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
          Length = 915

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 131/325 (40%), Gaps = 34/325 (10%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           ++  L+  ++  +  +  +V +            ++  ++ A +     LSQ  R+    
Sbjct: 444 NVKELQQLVQPILTPTLGKVSIT--------SPSSVGIAENATDAGGDSLSQ--RDALLV 493

Query: 179 SSSKKVMNLLNIA------GEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-----SGPS 227
              ++V+N ++           QV +   I  V+       G   ++ G       +G  
Sbjct: 494 QDYEEVINEIDRVIIEMDIPPLQVIIDAKILSVKLTDDMAFGVNLALLGGDKNLAVTGNG 553

Query: 228 KSFAADFG-----GKFVSEGGDFSVKGVLDRFSFET-----VLHALERATAIRTLAEPTL 277
            S A   G     G  +  G  F       ++ F        + ALE       +A P +
Sbjct: 554 ASIATSSGFPGGTGSIIPPGAQFLANTAGLKYGFIAGDITGFIRALESIADTSLVASPQI 613

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            A++ Q A    G +  YKT++ ++  T  +V   + G  L   P +   G + + +  E
Sbjct: 614 RALNKQRAEMIIGNRLSYKTLAFNSTQTIENVNFLESGTKLIIRPFIAPDGLVRMEVHPE 673

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            S  VI  + G +P     +  T V +  G T+V+ GL+ ++  +  + +P+L  IP++G
Sbjct: 674 RSRAVINQSTG-LPDQDTTEVTTNVMVRDGQTVVIGGLISEESTESIDRVPVLGAIPLVG 732

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
           A FRN     E TE+ +  TP +V 
Sbjct: 733 AAFRNKSSRIERTELIVLITPRIVD 757


>gi|315636411|ref|ZP_07891655.1| general secretion pathway protein D [Arcobacter butzleri JV22]
 gi|315479277|gb|EFU69966.1| general secretion pathway protein D [Arcobacter butzleri JV22]
          Length = 478

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 112/239 (46%), Gaps = 14/239 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGK-------FVSEGGDF 245
           QV ++  I EV  +++ +IG  + I  SS  S    + +++  G          + G   
Sbjct: 175 QVYVQAKIIEVNNELVNKIGISYGIINSSARSDGINAISSNLNGGSNAIKEAVDTLGIRM 234

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA- 304
           +   +    +    L+ L++  A+  ++EP++ AI  + +S   G +   +  S+ T   
Sbjct: 235 NDLNIKSGLALGASLNLLQQNGALDIVSEPSILAIDNKESSIYVGEKISVEISSTLTDGG 294

Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTV 360
              T+    D G+ L   P + S  ++ L I T +       V+AG  P    ++  T  
Sbjct: 295 LQRTNYEREDIGLTLKVKPRISSDTKLTLEINTLLEGIKSTSVSAGQNPDTLKKEIKTAA 354

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L +G ++++ GL+++  + +++ +P+L  IP+ G LF+N     ++  + I  TP+++
Sbjct: 355 ILNNGESVIIGGLIENKNETIEQKVPVLGDIPLFGELFKNDSKMNKKNNLVIIVTPYMI 413


>gi|167589893|ref|ZP_02382281.1| type II and III secretion system protein [Burkholderia ubonensis
           Bu]
          Length = 773

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 134/357 (37%), Gaps = 30/357 (8%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            D   +   LR+ I   ++ V+   + VV+     TIQ ++R V                
Sbjct: 267 ADAKSVMAALRQMIKPKDVYVDERVNAVVMRDTPETIQVAERVVMG-------------- 312

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                     L+I  + +VTL V + EV  +    +G Q+      S             
Sbjct: 313 ----------LDIP-QSEVTLDVQVLEVNMNDSLDLGVQYPGKVQFSALGGVEGGALTLG 361

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            +       V    +       +  L++    +TLA P +   + + A+   G +    T
Sbjct: 362 DLLRLNRDRVGVASESGGLALAIDMLQKQGKTKTLANPKIRVRNMEKANIKIGERVPIVT 421

Query: 298 VSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYR 352
            +++ G  +  V+  D G++L   P +     + +++  EVS  +            +  
Sbjct: 422 TTNANGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILSKETTKTGLVAYALG 481

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A+T +   +G T +LAGL+K +  +   G+P +S +P++G LF ++  + E TEI +
Sbjct: 482 TRNAETLMTAKNGETQILAGLVKRNESENIAGLPGMSGLPVIGRLFGSNGRSNERTEIVL 541

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
             TP + + + +   +        E           +    P  A   +G +    I
Sbjct: 542 LITPHIERNLDLPTSAVTTFLSGTESRVTTEALTLESARAVPARADSKDGPDLDAPI 598


>gi|225850376|ref|YP_002730610.1| general secretion pathway protein D [Persephonella marina EX-H1]
 gi|225645330|gb|ACO03516.1| general secretion pathway protein D [Persephonella marina EX-H1]
          Length = 669

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 120/292 (41%), Gaps = 28/292 (9%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            N+    + K+++  L+   + QV +   I EV    LK+IG +  + GS  G +     
Sbjct: 350 ANKTEYEAIKELVQNLD-KQKKQVLVTALITEVSEQALKEIGVRWQVFGSQGGAAFRGGI 408

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVL--------------HALERATAIRTLAEPTLT 278
              G +   G    V GVL        +                LER T    ++ P + 
Sbjct: 409 SKEGFYNIIGSTNFVAGVLSTSGENVEIGGNVLFFPDLLFLFSLLERGTGFNIVSSPKIL 468

Query: 279 AISGQSASFTSGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    AS        +        +     +    + G++L  TP +     I + I  
Sbjct: 469 TMDNIEASINVSQVTPFAQSVKFDINGNPIINYDYKEVGLILKVTPHISGDN-IVMEIHQ 527

Query: 335 EVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           EV+E      P IG  +  +P    R+ +TT+ + +G TIVL GL+     +  EG+P  
Sbjct: 528 EVNEVIGYEKPQIGEISYVVPITSKRELNTTITVTNGKTIVLGGLVSKKTIKTMEGVPFF 587

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           S IPI+G LF+    +  +T +F+  TPF+++     DL+R  + +    +A
Sbjct: 588 SSIPIIGNLFKYRSEDLNKTNLFVFLTPFIIE--KPEDLARITEEHQKLSEA 637


>gi|124385937|ref|YP_001027735.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|124293957|gb|ABN03226.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
          Length = 616

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G     AA     F
Sbjct: 376 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 435

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 436 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 494

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 495 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 552

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 553 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 612

Query: 419 V 419
           V
Sbjct: 613 V 613


>gi|330820184|ref|YP_004349046.1| type II and III secretion system protein [Burkholderia gladioli
           BSR3]
 gi|327372179|gb|AEA63534.1| type II and III secretion system protein [Burkholderia gladioli
           BSR3]
          Length = 697

 Score =  170 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 74/340 (21%), Positives = 131/340 (38%), Gaps = 30/340 (8%)

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
             LR+ +   +I V+   + +VL     TIQ ++R V                       
Sbjct: 280 AALRQMVKPKDIYVDERVNAIVLRDTPETIQVAERVVIG--------------------- 318

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
              L+I  + +VTL V + EV  +    +G Q+      S              +     
Sbjct: 319 ---LDIP-QSEVTLDVQVLEVNVNDSVDLGLQYPGKIQFSALGAGEEVGLTLGDLLRLNR 374

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
             +    +  +    +  L++    RTLA P +   + + A+   G +    T ++  G 
Sbjct: 375 DRIGVASESGALSMAIDMLQKQGKTRTLANPKIRVRNLEKANIRIGERVPIVTTTNGNGV 434

Query: 305 TS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTT 359
            +  V+  D G++L   P V     + +++  EVS  +      +     S   R ADT 
Sbjct: 435 VTESVSYQDVGLMLKVQPRVSLDDEVSVKVSLEVSNILSEQRTRSGLVAYSLGTRNADTL 494

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +   +G T VLAGL+K    + + G+P LS +P+LG LF + R   EETEI +  TP + 
Sbjct: 495 MTARNGQTQVLAGLIKRSEIESRAGLPWLSSLPVLGRLFGSERTRNEETEIVLLITPHIE 554

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           + + + + +        E        +      G + A  
Sbjct: 555 RRLDLPEAAVTTFLSGTETRVTTEALSLAPAGAGREPAPP 594


>gi|119773310|ref|YP_926050.1| type II and III secretion system protein [Shewanella amazonensis
           SB2B]
 gi|119765810|gb|ABL98380.1| type II and III secretion system protein [Shewanella amazonensis
           SB2B]
          Length = 703

 Score =  170 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 111/285 (38%), Gaps = 48/285 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 340 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATESGGGTQFNNLGPTIGEIGAGI 398

Query: 236 --------GKFVSEGGDFS-------------------------VKGVLDRFSFETVLHA 262
                    +  +  G+ +                         +   +    F  ++ A
Sbjct: 399 WQARGEEASEVTTIDGNGNPIVSKNPEKRGDITLLAQALGKVNGMAWGVAMGDFGALIQA 458

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVL 316
           +   T    LA P++T +  Q A+F  G +    T + ++         +V   + GV L
Sbjct: 459 VSSDTNSNVLATPSITTLDNQEAAFIVGDEVPVLTGAQNSSNGNSNPFQTVERKEVGVKL 518

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             TP +     + L I+ EVS   I    G   ++  R+  TTV   SG  +VL GL+ +
Sbjct: 519 KVTPQINEGNAVKLAIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLINE 576

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           ++Q+  + +P+L  IP+LG LF++S   +++  + +   P +++ 
Sbjct: 577 EVQESVQKVPILGDIPLLGHLFKSSSSGKKKKNLMVFIKPTIIRD 621


>gi|300113065|ref|YP_003759640.1| type IV pilus secretin PilQ [Nitrosococcus watsonii C-113]
 gi|299539002|gb|ADJ27319.1| type IV pilus secretin PilQ [Nitrosococcus watsonii C-113]
          Length = 699

 Score =  170 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 105/269 (39%), Gaps = 31/269 (11%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGG 236
           ++ +K++  L+I    QV ++  +     D  +++G +  ++      G           
Sbjct: 430 AALRKLVASLDIP-VRQVLIESRVVIASSDFSRELGVRFGLSKQDKVGGAFDQVTTSGSL 488

Query: 237 KFVSEGGDFSVKGVLDRFS------------FETVLHAL-------------ERATAIRT 271
              ++  +     + DR +                L  L             +       
Sbjct: 489 NGTTQIINQETLELQDRLNVNFPVTKKDAAKIALALTNLPLGALLELELSALQAEGRGEV 548

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           ++ P +   + + A    G +  Y+  SSS GATSV+     + L  TP +    RI + 
Sbjct: 549 ISNPRVITSNQKEAIIEQGTEIPYQRASSS-GATSVSFKKAVLSLKVTPQITPDDRIIMD 607

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +   V++  +G     +PS   R+  T V + +G T+VL G+ + +  +    IP L  +
Sbjct: 608 L--GVTKDSVGKVFAGVPSINTREVSTQVLVNNGQTVVLGGIYEQEKNRAVRRIPFLGDL 665

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P  G LFR+      + E+ I  TP ++K
Sbjct: 666 PYAGILFRDKTEFNNKRELLIFVTPKIIK 694


>gi|332977545|gb|EGK14316.1| type IV pilus biogenesis protein PilQ [Psychrobacter sp.
           1501(2011)]
          Length = 608

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 104/276 (37%), Gaps = 43/276 (15%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           +++ ++I    QV ++  I     +  K++G +  I  +    + +       + +++  
Sbjct: 333 LISQIDIP-VQQVMIEARIVSATDNFSKELGVKWGILSNGVANNDTLLVGGSDQTLADLK 391

Query: 244 DFS-------------------------------------VKGVLD--RFSFETVLHALE 264
            FS                                       G+L       +  L A++
Sbjct: 392 QFSRRNTTFKGKPVSYPDYAVSRPDNLNIDLGIANPAGSIAFGILSMSDLMIDLELSAMQ 451

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                  ++ P +  +  Q+A  +SG +  Y++  S  G T+    +  + L  TP +  
Sbjct: 452 AEGRGEVISTPKILTLDKQTAKVSSGTKIPYQS-ESEGGGTTTQFEEALLSLEVTPNITP 510

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            G I L++  E   P     +  +      +  T V +  G TIVL G+ ++ I    E 
Sbjct: 511 EGEISLQLNIENGRP--NPVSSGVILIDTDRLSTHVTVADGQTIVLGGIYRNQIFNNVEK 568

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P    +P+LG LF+      ++ E+ I  TP L++
Sbjct: 569 VPFFGDLPLLGRLFKKDLRRNDKQELLIFVTPTLIQ 604


>gi|254225450|ref|ZP_04919061.1| general secretion pathway protein D [Vibrio cholerae V51]
 gi|125622084|gb|EAZ50407.1| general secretion pathway protein D [Vibrio cholerae V51]
          Length = 675

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 135/375 (36%), Gaps = 72/375 (19%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181
           +   L+R I   ++ +    +  V++      +D    ++ +SE   ++ G  Q   S  
Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKR 304

Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216
            +VM       N L +                      QV ++  I E+       +G Q
Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364

Query: 217 HS-------ITGSSSGPS---------------------------------KSFAADFGG 236
                    I   ++G S                                  +   D+  
Sbjct: 365 WGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTEKKPIRNSETGEIKYYEETTTKGDYSK 424

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              +  G       +    +  +++A+   ++   L+ P++T +    ASF  G +    
Sbjct: 425 LASALSGLQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVI 484

Query: 297 TVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           T S++         +V   + G+ L   P +     + L I+ EVS  V+G N      +
Sbjct: 485 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRF 543

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + 
Sbjct: 544 AKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLM 603

Query: 412 IAATPFLVKPVAMRD 426
           +   P +++     D
Sbjct: 604 VFIKPTIIRDGMTAD 618


>gi|223040615|ref|ZP_03610885.1| type II and III secretion system protein [Campylobacter rectus
           RM3267]
 gi|222878073|gb|EEF13184.1| type II and III secretion system protein [Campylobacter rectus
           RM3267]
          Length = 513

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 113/311 (36%), Gaps = 35/311 (11%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
             +L+    +I      +  +   ++ +G        S  + + +    + QV + V+I 
Sbjct: 181 KAILNNTTESIVAPDPIINANAGLVTVTGTAAQLRRVSDYIKD-IQERLKKQVIIDVSIV 239

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------- 252
            V        G   S          +       +  S GG  +     +           
Sbjct: 240 SVELANSYTKGIDWSKFSIGFKTGFANGIPLFSEQNSNGGSLTWSNRGNSFSRGFNRELS 299

Query: 253 -----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------ 301
                 F+ + VL+ LE     + ++ P +T ++ Q A  + G    Y+    S      
Sbjct: 300 LLSGFNFNLDGVLNFLETNGKTKVISSPKITTLNNQQALISVGDNVNYRVQEESQNNNSL 359

Query: 302 TGATSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MP 349
            G T++T   Y    G++L+  P V    +I LRI   +S      +            P
Sbjct: 360 NGKTTITYKQYSVFIGILLNILPEVSDDNKIMLRINPSLSSFKYNEDDVRQSTKIREIAP 419

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               +K  T V++ SG TIVL GL+     +    +P L  IP+ G  F++++ N   TE
Sbjct: 420 DTIQKKLSTVVQVNSGDTIVLGGLIAQSKGKENTKVPFLGDIPVFGNAFKSTKDNIRTTE 479

Query: 410 IFIAATPFLVK 420
           +    TP +V 
Sbjct: 480 LVFIITPRIVD 490


>gi|108759429|ref|YP_633909.1| type IV pilus secretin PilQ [Myxococcus xanthus DK 1622]
 gi|108463309|gb|ABF88494.1| type IV pilus secretin PilQ [Myxococcus xanthus DK 1622]
          Length = 901

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 106/271 (39%), Gaps = 35/271 (12%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGP------- 226
           ++ ++  L+     QV ++  I E      + +G Q          TG+S+G        
Sbjct: 625 ARSLVRSLDTQTP-QVLIESRIVEANTSFSRSLGVQWGGQARAGQATGNSTGLIFPNNLA 683

Query: 227 --------------SKSFAADF---GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                         + +FA +     G+ V     F+             L A E   ++
Sbjct: 684 VTGGVTGTGAGLPDNPNFAVNLPTGTGQGVGGAMGFTFGSAGGALQLNLRLSAAENEGSV 743

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           +T++ P +T +   +A  + G    +   S+     + T  +  + L  TP +   G + 
Sbjct: 744 KTISAPKVTTLDNNTARISQGVSIPFSQTSAQ--GVNTTFVEARLSLEVTPHITQDGSVL 801

Query: 330 LRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           + I    ++P      A   PS + ++A+T V +  G T V+ G+           +P L
Sbjct: 802 MSINASNNQPDPSSTGANGQPSIQRKEANTQVLVKDGDTTVIGGIYVRRGATQVNSVPFL 861

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
           S+IP+LG LF+N+       E+ I  TP ++
Sbjct: 862 SRIPVLGLLFKNNSETDTRQELLIFITPRIL 892


>gi|94500433|ref|ZP_01306965.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
 gi|94427468|gb|EAT12446.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
          Length = 524

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 115/270 (42%), Gaps = 24/270 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGG 236
           S+ ++ ++   ++   QV ++  I EV  +   Q G Q     SS     + S +A    
Sbjct: 232 SAVEQFLDKAQLSLNKQVIIEAKILEVTLNDGYQAGIQWDGLASSGSTEFTPSLSATTLR 291

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                 G FS+        F  V+  L+R   ++ L+ P ++ ++ Q A    G    + 
Sbjct: 292 NPDDIDGIFSLA--FTGSDFTGVIQLLKRQGKVQVLSSPRISTVNNQKAVIKVGTDEFFV 349

Query: 297 TVSSST-----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----- 340
           T  S+               ++T    G+ L  TP +     + L +   V+E V     
Sbjct: 350 TDVSNDTTTTTTTTSTNPEVTLTPFFSGIALDVTPQISENNDVILHVHPSVTEVVERNKV 409

Query: 341 --IGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
             +G +  ++P     +R+ D+ +   +G  +V+ GLL+D   +    +P L++IPILGA
Sbjct: 410 IELGDDIFNLPLAVSSIRETDSIIRARNGQVVVIGGLLQDKQSRTDASVPWLARIPILGA 469

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           LFR S     ++E+ I   P +V     +D
Sbjct: 470 LFRQSDQESTKSELVILLQPKVVDEDTWQD 499


>gi|89901694|ref|YP_524165.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89346431|gb|ABD70634.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 710

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 100/282 (35%), Gaps = 42/282 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKS 229
           ++++  L+I    QV ++  I E      K +G +                  S     +
Sbjct: 433 QQLIAKLDIP-VRQVLIEARIVEASDTFGKSLGVKLGGNDLRAQRGGDGGYQLSGDNRVA 491

Query: 230 FAADFGGKFVSEGGD--------------------------FSVKGVLDRFSFETVLHAL 263
           F   +G    S G                             S+            L AL
Sbjct: 492 FGTSYGNAVASSGAGGVVDLTSNFVNLPAVGQGGYNPATFALSIFSSAANRFLNLELSAL 551

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E     + ++ P +       A    G +  Y+  SSS GAT++      + L  TP + 
Sbjct: 552 EADGKGKVVSSPRVVTADQIKALIEQGTELPYQVASSS-GATAIAFRKANLKLEVTPQIT 610

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             G I L +  +V++  +G +     +   +   T V + +GGT+V+ G+ +      + 
Sbjct: 611 PEGNIILDL--DVNKDTVGQSTAAGFAINTKHIKTQVLVENGGTVVIGGIFELTESDNET 668

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            +P L  +P +G LF+       + E+ +  TP +V   A R
Sbjct: 669 KVPFLGDLPGVGNLFKTRGRVSNKQEMLVFITPKVVADRAAR 710


>gi|91225619|ref|ZP_01260693.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 12G01]
 gi|91189739|gb|EAS76013.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 12G01]
          Length = 529

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 113/281 (40%), Gaps = 32/281 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ + +     + QV L+  I EV  +   Q G   S   +S G S S   +     +  
Sbjct: 241 REFLGVSQERMQRQVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSIVVNRPASTLPP 300

Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                   GG  +V   +   +F  VL  +     +  L+ P +TA + Q +    G   
Sbjct: 301 LDAIGTLLGGQTNVT--ISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDE 358

Query: 294 LYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPV 340
            + T  SS               +T    G+ L  TP + + G + L +     EV+E V
Sbjct: 359 YFVTELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEV 418

Query: 341 IGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             +N G         +    +R++D+ +    G  +V+ GL+K   ++L   +P L  +P
Sbjct: 419 KQLNLGGDFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVP 478

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
            LG LFRN     E+TE+ I   P +V      ++L R  D
Sbjct: 479 ALGHLFRNVNNVTEKTELVILLKPTVVGVNSWQKELERSRD 519


>gi|254507437|ref|ZP_05119572.1| msha biogenesis protein mshl [Vibrio parahaemolyticus 16]
 gi|219549693|gb|EED26683.1| msha biogenesis protein mshl [Vibrio parahaemolyticus 16]
          Length = 527

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 116/288 (40%), Gaps = 39/288 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGG 236
           ++ + +     + QV L+  I EV      Q G   S   SS+G + +        D  G
Sbjct: 232 REFLGVSQQRMQRQVILEAKILEVTLSDGYQQGINWSKAFSSNGTNYTIGQGSIVKDTSG 291

Query: 237 KFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
             +              GG  ++  V+   SF+ VL  +     +  L+ P +TA + Q 
Sbjct: 292 SIIPAVLPGLDAIGTLLGGQSNL--VISSGSFDAVLSFMATQGDLNVLSSPRVTASNNQK 349

Query: 285 ASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           A    G    + T  SS          +    +T    G+ L  TP +   G + L +  
Sbjct: 350 AVIKVGTDEYFVTDLSSVVGNGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHP 409

Query: 335 -------EVSEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
                  +V E   G +   +P  R  +R++D+ +    G  +V+ GL+K +       +
Sbjct: 410 AVIDVNEQVKEIGFGDSRITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTVDQVSKV 469

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
           P+L  +P+LG LFRN+    ++TE+ I   P +V      ++L R  D
Sbjct: 470 PVLGDVPVLGHLFRNTSKLTQKTELVILLKPTVVGVNTWQKELERSRD 517


>gi|90023220|ref|YP_529047.1| helix-turn-helix, AraC type [Saccharophagus degradans 2-40]
 gi|89952820|gb|ABD82835.1| type II and III secretion system protein [Saccharophagus degradans
           2-40]
          Length = 666

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 104/268 (38%), Gaps = 32/268 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------------T 220
            ++  L+I    QV ++  I ++  D  K++G Q                         T
Sbjct: 337 TIVERLDIK-RAQVLVEAIIVDINVDANKELGVQWMFSNENNGTFGGSSQGDGSLGSLAT 395

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G+  G + +      G   + G    V G     +F  +L AL+ ++    L+ P+L  +
Sbjct: 396 GTLGGGTDALTNLASGIAGNTGQLLGVAGNNGGENFIALLSALQTSSDANILSTPSLVTM 455

Query: 281 SGQSASFTSGGQHLYKTVSS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
             Q AS + G    ++T S              T++   D G+ L  TP V    +I L 
Sbjct: 456 DNQEASISVGQSVPFRTGSYSTTGTTGSVGNPFTTIQREDVGITLTVTPHVNEGNKILLD 515

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           I  EVS     V           K +T +    G  ++L GL+++D+Q     +PLL  I
Sbjct: 516 ISQEVSSISSSVAGSADLITNQSKIETQLLANDGQIVILGGLIQEDVQDGDTRVPLLGSI 575

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P+LG LF+       +  + +     +V
Sbjct: 576 PLLGHLFKYQSTKFLKKNLMVFIRVKIV 603


>gi|327479223|gb|AEA82533.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri DSM
           4166]
          Length = 706

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 100/280 (35%), Gaps = 35/280 (12%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
           + Q      ++++  L+I    QV ++  I E      K +G +   + ++         
Sbjct: 420 QTQERLDELRRIVAQLDIP-VRQVMIEARIVEANVGYDKALGVRWGGSYTNDNWGLYGKD 478

Query: 233 DFGGK---------------------------------FVSEGGDFSVKGVLDRFSFETV 259
              G+                                  ++      +  V D    +  
Sbjct: 479 GAIGRDEDGGRYLLPGTDKVGNFTLEDALAPVPFVDLGVLNSTAGIGIGYVSDHGILDLQ 538

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A+E+      +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  T
Sbjct: 539 LSAMEKTGNGEIVSQPKVVTADKETAKILKGAEIPYQEASSSGATST-SFKEAALSLEVT 597

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +    RI + ++     P        +P     + +  V +  G TIV+ G+  +   
Sbjct: 598 PQITPDNRIIMEVKVTKDAPDFANALNGVPPINKNEVNAKVLVTDGETIVIGGVFSNSQI 657

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              E +P L  +P +G LFR      +++E+ +  TP ++
Sbjct: 658 SSIEKVPFLGDVPFVGRLFRRDIVEDKKSELLVFLTPRIL 697


>gi|307826274|ref|ZP_07656482.1| type IV pilus secretin PilQ [Methylobacter tundripaludum SV96]
 gi|307732679|gb|EFO03548.1| type IV pilus secretin PilQ [Methylobacter tundripaludum SV96]
          Length = 785

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 97/277 (35%), Gaps = 33/277 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVS 240
           KK++  L++    QV ++  +        + +G +      +S G  KSFA    G   +
Sbjct: 510 KKLIRKLDVP-VRQVMIEARVVIADDSFTENLGVKFGAAKAASLGSGKSFAVGGSGTKGN 568

Query: 241 EGGDFSVKGVLDRFS------------------------------FETVLHALERATAIR 270
                   G +   +                                  L AL+      
Sbjct: 569 GNLQPDANGNIGTLNDTLVDLGVAGLTATPPGALGMTLARGADYVLNLELQALQIEGKGE 628

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            ++ P +  +   +A    G Q    T  ++    + T  D  + L+ TP +   G + +
Sbjct: 629 IVSNPRVMTMDRCTAVMMQGVQIPVTTPGTANTPPTTTYIDAVLKLNATPQITPSGSVIM 688

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +           N     P    R+  T+V +  G T+VL G+ +      K  IP  +
Sbjct: 689 NLLITKDNANTTSNPVSGNPGIDKREIKTSVLVEDGETVVLGGVYEGAESYGKNKIPFFA 748

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +P +G LF NS  N+ + E+ I  TP ++K     D
Sbjct: 749 DLPGIGFLFTNSTTNKTKKELLIFVTPKIMKDNVASD 785


>gi|163883892|gb|ABY48121.1| RcpA [Yersinia ruckeri]
          Length = 304

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 25/294 (8%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + + +   +  I+ V  ++  +  S    AD  +    ++ ++ K  G A   L     
Sbjct: 32  AEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKKN 91

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           K +  + + +++ I+  +  +R    DS I +  + +  +L G  +T +  +   ++   
Sbjct: 92  KPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVAN 151

Query: 167 FLSQSGRNQ----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
            +      Q    Y   S   + N + I   +QV +K+TIAEV +D    IG   S  G+
Sbjct: 152 AIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIGN 211

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            SG       + G                      T++ A+   +  R LAEP L+ +SG
Sbjct: 212 VSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLSG 252

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ++ASF  GG+     VS++    +V+  ++G+ L+    V    RI +++  EV
Sbjct: 253 ETASFLVGGELPI--VSTTQNTINVSYKEFGIKLNIGAKVSESKRIRVKLDEEV 304


>gi|260428676|ref|ZP_05782654.1| general secretion pathway protein D [Citreicella sp. SE45]
 gi|260420270|gb|EEX13522.1| general secretion pathway protein D [Citreicella sp. SE45]
          Length = 320

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 13/314 (4%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            R+   +   L   +   +  V + S+           Q  + A + S   L      + 
Sbjct: 6   NRNAEEVAPILNNLLLGGSETVSLSSEQGSTSAASSGSQTYKVAADTSRNALIVRATQEE 65

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
               +  + +L   A   QV L+ TIAEV  +    +G +            S   + G 
Sbjct: 66  HREITAMLRDLDTAA--RQVLLEATIAEVTLNDELNVGVRWYFQNGDVATRFSDLENGGV 123

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                G       +L R      L+AL   T ++ ++ PTL  +  Q      G Q    
Sbjct: 124 AGNYPG----FSAILSRGGANVALNALAAVTDVKVISSPTLMVVDNQEGLLQIGDQVPIA 179

Query: 297 TVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMP 349
             +SS         T V   D G++L   P + + G + L+I+ EVS+      +G D P
Sbjct: 180 RQTSSEANADAVVLTQVEYRDTGIILKVRPRIGADGAVNLKIEQEVSDVSATRTSGIDSP 239

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   RK  T   L  G T+ L GL+++   + +  +P L ++P++G LFR     ++ TE
Sbjct: 240 TISTRKVSTHAVLADGQTLTLGGLVQERDNKTRAEVPGLGRVPVVGTLFRAKDNAKDRTE 299

Query: 410 IFIAATPFLVKPVA 423
           + I   P +V   A
Sbjct: 300 LIIMIRPRVVHNAA 313


>gi|254246562|ref|ZP_04939883.1| AscC [Burkholderia cenocepacia PC184]
 gi|124871338|gb|EAY63054.1| AscC [Burkholderia cenocepacia PC184]
          Length = 543

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 86/434 (19%), Positives = 153/434 (35%), Gaps = 42/434 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
            P +   PP + ++AA     D +  +   +++   + + L    D              
Sbjct: 87  GPPIPLAPPARMSDAAARQPGDADDARRISLNL---QGVGLAAAFDAIARFTGLNIVVGE 143

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL--DILIERDIAHLEMTLRRFIADSNIR 137
            V    T+ L      +A   L+   G  M      I +    A L    R         
Sbjct: 144 QVRGTVTLRLNNVRWREAFDTLLDTHGLAMSRRGNVIWVTP-AAELAARERERFEMHARA 202

Query: 138 VEM---VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG-- 192
            ++    S T VLH      QD QR +  +      S R   A      ++ + ++A   
Sbjct: 203 ADLEPLASRTFVLH--YPRAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRI 260

Query: 193 -------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADF-- 234
                          QV ++  I E  +   + +G + ++      PS    SF A+   
Sbjct: 261 TQIAGLIDAIDRPSRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPSAEGASFTANARN 320

Query: 235 --------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                    G F +    F++         +  L ALE     + ++ P +       A 
Sbjct: 321 ALDLAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAI 380

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
              G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G    
Sbjct: 381 VEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTA 437

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P+   +   T VE+ +GGT+ + G+ +   +     +PLL KIP LGALFR+     +
Sbjct: 438 AGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQ 497

Query: 407 ETEIFIAATPFLVK 420
             E+ +  TP +V 
Sbjct: 498 RNELVVFITPTVVD 511


>gi|254293816|ref|YP_003059839.1| general secretion pathway protein D [Hirschia baltica ATCC 49814]
 gi|254042347|gb|ACT59142.1| general secretion pathway protein D [Hirschia baltica ATCC 49814]
          Length = 660

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 113/292 (38%), Gaps = 44/292 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKF 238
           ++V+  L+     QV ++  I E+  +  +++G +  ++GS S  +   A +F       
Sbjct: 339 ERVVEELDQR-RSQVLVEAIIVELSDNAARELGLEFVLSGSGSSATPFAATNFTRSTTNV 397

Query: 239 VSEGGDFSVKG--------------------------------VLDRFSFETVLHALERA 266
           +S  G  ++                                    D   F  +++A++  
Sbjct: 398 LSLAGALALDSDTVGEETVSSLRSAAISSLLGSAGGLLGIGGQSSDGTIFGAIINAVDSD 457

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTPT 321
                L+ P L  +  + AS T G +    T      ++S    +V     GV L   P 
Sbjct: 458 ITSNVLSTPHLLTMDNEKASITVGQEVPITTGEALGTNNSNPFRTVERKPLGVTLEVEPQ 517

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     I L ++ EVS     ++  D  +   R+ +TT+    G  +VL GL++++    
Sbjct: 518 IGEGDSIKLNLRQEVSSIFDSIDGTDFIT-NNREINTTILADDGEIVVLGGLIQEEETLN 576

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
              +PLL  IP +G LF +    ++ T + +   P +V+      + R  D 
Sbjct: 577 ISKVPLLGDIPGVGRLFSSEGTTKKRTNLMVFLKPTIVR--DAETMQRATDQ 626


>gi|284432099|gb|ADB84857.1| PilQ [Bdellovibrio sp. JSS]
          Length = 724

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 99/243 (40%), Gaps = 14/243 (5%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKF 238
               QV+++  I E +    + IG   S TG+            +  PS +      G  
Sbjct: 467 TQPAQVSIEGKIVEAKESFTRNIGVNWSATGAPIKLGSTARGPVNMNPSFNVNQSAAGSS 526

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +   + +V  +    +    L   E    ++ ++ P +  +S + A      +   + V
Sbjct: 527 GALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQTTEVPVRQV 586

Query: 299 SSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           + +  AT  +       + L  TP V + G + +++  +     +        +   R+A
Sbjct: 587 TQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVNRQFRGADVSSAGQGAFAVNSREA 646

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V + +G T V+ G+ + D    + G+P   ++P +  LF+    ++E++E+ I  TP
Sbjct: 647 NTRVLVKNGQTAVIGGIYQSDATDGEVGVPWFRELPYVSYLFKTKNISKEKSELLIFLTP 706

Query: 417 FLV 419
            ++
Sbjct: 707 XIM 709


>gi|212633381|ref|YP_002309906.1| type II and III secretion system protein:secretin [Shewanella
           piezotolerans WP3]
 gi|212554865|gb|ACJ27319.1| Type II and III secretion system protein:Secretin [Shewanella
           piezotolerans WP3]
          Length = 558

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 107/264 (40%), Gaps = 26/264 (9%)

Query: 182 KKVMNLLNIAG---EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++V N +  A    + QV L+  + EV      Q G         +G +           
Sbjct: 271 RQVRNFIKTAESHLQRQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDITFGTSPTTG 330

Query: 239 VSEGGDFSVKGV----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           +S+     + GV    L    F T++  L+    +  L+ P +TA + Q A    G    
Sbjct: 331 LSDQITSVLGGVTSIQLKGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEY 390

Query: 295 YKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           + T  SST   G T VTT +        G+ L  TP + + G + L I   V +      
Sbjct: 391 FVTDVSSTTVAGTTPVTTPEVELTPFFSGIALDVTPQIDAEGNVLLHIHPSVIDIKEQTK 450

Query: 345 AGDMPSYR---------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
              +             +R++DT ++  SG  +V+ GL+K +  +L   +PLL  IP LG
Sbjct: 451 TIKISDSTLELPLAQSEIRESDTVIKAASGDVVVIGGLMKSENIELVSKVPLLGDIPYLG 510

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
             F N   +  +TE+ I   P +V
Sbjct: 511 EAFTNRANSTVKTELVILLKPVVV 534


>gi|56476093|ref|YP_157682.1| general (Type II) secretion pathway (GSP) D protein [Aromatoleum
           aromaticum EbN1]
 gi|56312136|emb|CAI06781.1| General (Type II) secretion pathway (GSP) D protein [Aromatoleum
           aromaticum EbN1]
          Length = 771

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 136/338 (40%), Gaps = 48/338 (14%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
             D    +  L++ +   ++ ++   + +V+       +D+ +AV L+E  L+       
Sbjct: 278 NADAKQAQSLLKQLVKSKDMFIDEKLNLLVI-------KDTPQAVRLAERLLA------- 323

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKS 229
                      L++A  + V L+V + EV R  L+++G           +          
Sbjct: 324 ----------SLDVAEPE-VMLEVEVLEVARSKLRELGLDFPDEIGYGLLRSQQQITQTQ 372

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTA 279
            AA    + V+  G     GV+ R  +             L           LA P +  
Sbjct: 373 TAAGIVSEVVTLPGSEIAPGVVPRAQWGDLTGYVTNPALTLRLRAEDGDTNLLANPRIRV 432

Query: 280 ISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            + + A    G +    T +S+     + SV+  D G+ L   P V     + +++  EV
Sbjct: 433 KNREKAKIHIGEKLPVFTTTSTANVGVSASVSYLDVGLKLDVEPAVTLDDEVAIKVALEV 492

Query: 337 SEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           S  V    G +         R A T + L +G T VLAGL+ D+ ++  + +P L  +P+
Sbjct: 493 SNIVREVPGPSDSLAYQVGTRSATTVLRLRNGETQVLAGLISDEERRSAQRLPGLGDLPL 552

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +G LF + R N  +TEI +  TP +V+ +    L+R D
Sbjct: 553 IGRLFSSERNNASKTEIVLLITPRIVRNIVAPSLARAD 590


>gi|294667368|ref|ZP_06732586.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602809|gb|EFF46242.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 648

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 110/285 (38%), Gaps = 47/285 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224
           +++++ ++    DQV ++  I        + +G +  ITG++                  
Sbjct: 359 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNT 417

Query: 225 -----------GPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                      G S + A+              G   S     +   +   F+ +  L A
Sbjct: 418 AAQRANEIANTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSA 477

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHF 318
           ++       ++ P +   + +      G +  Y T+S          +V   +  + L  
Sbjct: 478 MQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGGGTGGQSQANVQFKEVLLELKV 537

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           TPT+ +  R+ L +  +  E    +N    G +P    R+ +T V +  G T+V+ G+ +
Sbjct: 538 TPTITNDNRVFLNMNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYE 597

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 598 FNDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642


>gi|288572884|ref|ZP_06391241.1| general secretion pathway protein D [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568625|gb|EFC90182.1| general secretion pathway protein D [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 659

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 124/308 (40%), Gaps = 39/308 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            ++  L+I    QV ++  IAEV    LK  G   +  G     S  FAA+      +  
Sbjct: 347 DIIKQLDI-QPKQVMVRGLIAEVNLTNLKNAGIDWATWGGQVSGSTVFAANAALGGSTGV 405

Query: 243 GDFSVKGVLD---------------------------RFSFETVLHALERATAIRTLAEP 275
               V    D                                  +  L++  A+  L+ P
Sbjct: 406 PSTFVDWFQDLSKKETYEWITPETGEPYREKTTVYEGNSLIYAYVQLLKKYDAMNILSMP 465

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIG 329
            L     + +S   G        S+S  +       S    D G+ L  TP + S   + 
Sbjct: 466 RLMCTDNKESSLMVGQTIPQMKASTSDISNPSSVQNSYDYKDTGLKLKITPHIRSGNLVA 525

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           L I+    E +  + +   P    R+  T+V++ +G TI+L GLLK+  + LK+ +P+LS
Sbjct: 526 LDIEQSTEEVLSAMTSTT-PVTAKREVKTSVQVRNGETIILGGLLKETEKSLKQRVPILS 584

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR---PDDHYSVEDDAKAFFF 445
            IP++G LF++S   RE+ E+ +  TP++++ P A  + S+     D      +A+    
Sbjct: 585 YIPLVGELFKSSTNQREKIELMVFLTPYILETPEAATEASKAVAASDTDLGLSEAEIRLN 644

Query: 446 NRVNKIYG 453
            R  ++Y 
Sbjct: 645 RRFQEMYR 652


>gi|167564371|ref|ZP_02357287.1| type II/III secretion system protein [Burkholderia oklahomensis
           EO147]
          Length = 521

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              +    +G      A   G F
Sbjct: 281 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRATGVVAGRNGTLADLTARPIGGF 340

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 341 DAATAGLTLFAARASRLLDVELSALESEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 399

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +        +G      P+   +   T
Sbjct: 400 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDLDIAKD--SVGEETASGPAIHTKHVQT 457

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 458 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRALRAQRSELVVYITPTV 517

Query: 419 V 419
           V
Sbjct: 518 V 518


>gi|124268320|ref|YP_001022324.1| general secretion pathway protein D [Methylibium petroleiphilum
           PM1]
 gi|124261095|gb|ABM96089.1| general secretion pathway protein D [Methylibium petroleiphilum
           PM1]
          Length = 736

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 114/321 (35%), Gaps = 55/321 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAAD 233
           + V++ L+ A   QV ++  + EV        G Q           TG   G +     D
Sbjct: 396 RSVIDQLD-ARRAQVYVETMLVEVNATKAADAGIQWQGLIGKDGDKTGLIGGTNFGTGGD 454

Query: 234 ---------------FGGKFVSEGGDFSV-KGVLDRFSFETVLHALERATAIRTLAEPTL 277
                            G   S G +  V +     ++   +   LE       L+ P L
Sbjct: 455 NIINLSIAAAQGGTAVSGNLPSAGLNLGVIRRFAGVYTLGALARFLETNADGNILSTPNL 514

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRI 328
             +  + A    G    + T S ++  T         ++   D G+ L   P +   G +
Sbjct: 515 VTLDNEEAKIVVGQNVPFVTGSFTSTGTGSGATNPFQTIERRDVGITLRVKPQIGENGTV 574

Query: 329 GLRIQTEVSEPVIGVNAGDMP------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            + I  E S  V    +  +           R  ++TV +  G  +V+ GL++D  Q   
Sbjct: 575 RMTIYQEASSVVNQNVSQGVADATAGLVTNKRSIESTVVVNDGDILVMGGLMQDQFQDNS 634

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
             +P L ++P +GALFR+    R ++ + +   P +++                 + + A
Sbjct: 635 SRVPGLGRLPGIGALFRSDNRTRTKSNLMVFLRPQVMR---------------SAESSNA 679

Query: 443 FFFNRVNKIYGPKEASEVEGQ 463
              +R + I   ++ S+ E +
Sbjct: 680 LSLDRYDLIRAQQQNSQPESR 700


>gi|170723341|ref|YP_001751029.1| general secretion pathway protein D [Pseudomonas putida W619]
 gi|169761344|gb|ACA74660.1| general secretion pathway protein D [Pseudomonas putida W619]
          Length = 650

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 117/335 (34%), Gaps = 38/335 (11%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY- 176
            +   +   LR    +  +  E   +     G  +       A +       + G N   
Sbjct: 275 ANAGEVVKVLRGLSQEGGVPSEGAGE-----GEAKDKPVMAAASDSGIRLEYEEGTNAVV 329

Query: 177 ------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
                   ++ + ++  L+I    QV ++  IAEV     +++G Q        G     
Sbjct: 330 MVGPDSELAAYRSIVEQLDIR-RAQVVVEAIIAEVSDSRAQELGVQWLFADEKFGAGIVN 388

Query: 231 AADFGGKF--------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
               G                        + G    +      F+F  +++AL+  +   
Sbjct: 389 FGSNGVNIANIAGAAASGDNEALGDLLSATTGVTAGIGHFGGGFNFAMLINALKGKSGFN 448

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPG 326
            L+ PTL  +    AS   G +  + T S +        ++   + GV L   P +    
Sbjct: 449 LLSTPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDN 508

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            + L I  EVS       A D+ +   R+  T V +   G ++L GL+ D++    + +P
Sbjct: 509 SVRLDIVQEVSSIADSSAASDVIT-NKREIKTKVMVEDNGLVILGGLISDELSTSDQRVP 567

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            L  IP LG LFR+      +  + +   P +++ 
Sbjct: 568 FLGDIPGLGRLFRSEASKNTKQNLMVFIRPRILRD 602


>gi|71066434|ref|YP_265161.1| fimbrial assembly protein PilQ [Psychrobacter arcticus 273-4]
 gi|71039419|gb|AAZ19727.1| fimbrial assembly protein PilQ [Psychrobacter arcticus 273-4]
          Length = 756

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 99/246 (40%), Gaps = 8/246 (3%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           K++  ++I    QV ++  I        K++G +  I            +      +   
Sbjct: 514 KLIGKIDIP-VRQVMIEARIVSASDSFSKELGVRWGILFDGKPDDNRLTSSGLNVDLGIS 572

Query: 243 GDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
              SV   + + S    +  L A++       ++ P +     Q+A  +SG Q  Y+  S
Sbjct: 573 NPASVAFGILKVSDVMLDLELLAMQADNRGEVISTPKILTSDKQTAKISSGTQIPYQEAS 632

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           +S GAT+ +  +  + L  TP +   G+IGL++      P I     +  +       T 
Sbjct: 633 AS-GATTTSFKEAALSLEATPNITPDGKIGLQLLITNGTPTI---INNQVAIAEDSISTN 688

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V +  G TIVL G+ K+      + +P L  +P +G  FR    +  + E+ I  TP L+
Sbjct: 689 VIVEDGQTIVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRKDVRSNTKEELLIFITPKLI 748

Query: 420 KPVAMR 425
                R
Sbjct: 749 NDGISR 754


>gi|116688415|ref|YP_834038.1| type IV pilus secretin PilQ [Burkholderia cenocepacia HI2424]
 gi|116646504|gb|ABK07145.1| type IV pilus secretin PilQ [Burkholderia cenocepacia HI2424]
          Length = 543

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 152/434 (35%), Gaps = 42/434 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
            P +   PP + ++AA     D +  +   +++   + + L    D              
Sbjct: 87  GPPIPLAPPARMSDAAARQPGDADDARRISLNL---QGVGLAAAFDAIARFTGLNIVVGE 143

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL--DILIERDIAHLEMTLRRFIADSNIR 137
            V    T+ L      +A   L+   G  M      I +    A L    R         
Sbjct: 144 QVRGTVTLRLNNVRWREAFDTLLDTHGLAMSRRGNVIWVTP-AAELAARERERFEMHARA 202

Query: 138 VEM---VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG-- 192
            ++    S T VLH      QD QR +  +      S R   A      ++ + ++A   
Sbjct: 203 ADLEPLASRTFVLH--YPRAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRI 260

Query: 193 -------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---SKSFAADF-- 234
                          QV ++  I E  +   + +G + ++      P     SF A+   
Sbjct: 261 TQIAGLIDAIDRPSRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPAAEGASFTANARN 320

Query: 235 --------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                    G F +    F++         +  L ALE     + ++ P +       A 
Sbjct: 321 ALDLAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAI 380

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
              G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G    
Sbjct: 381 VEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTA 437

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P+   +   T VE+ +GGT+ + G+ +   +     +PLL KIP LGALFR+     +
Sbjct: 438 AGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQ 497

Query: 407 ETEIFIAATPFLVK 420
             E+ +  TP +V 
Sbjct: 498 RNELVVFITPTVVD 511


>gi|157738059|ref|YP_001490743.1| general secretion pathway protein D [Arcobacter butzleri RM4018]
 gi|157699913|gb|ABV68073.1| general secretion pathway protein D [Arcobacter butzleri RM4018]
          Length = 478

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 112/239 (46%), Gaps = 14/239 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGK-------FVSEGGDF 245
           QV ++  I EV  +++ +IG  + I  +S  S    + +++  G          + G   
Sbjct: 175 QVYVQAKIIEVNNELVNKIGISYGIINASARSDGINAISSNLNGGSNAIKEAVDTLGIRM 234

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA- 304
           S   +    +    L+ L++  A+  ++EP++ AI  + +S   G +   +  S+ T   
Sbjct: 235 SDVNIKSGLALGASLNLLQQNGALDIVSEPSILAIDNKESSIYVGEKISVEISSTLTDGG 294

Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTV 360
              T+    D G+ L   P + S  ++ L I T +       V+AG  P    ++  T  
Sbjct: 295 LQRTNYEREDIGLTLKVKPRISSDTKLTLEINTLLEGIKSTSVSAGQNPDTLKKEIKTAA 354

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L +G ++++ GL+++  + +++ +P+L  IP+ G LF+N     ++  + I  TP+++
Sbjct: 355 ILNNGESVIIGGLIENKNETIEQKVPVLGDIPLFGELFKNDSKMNKKNNLVIIVTPYMI 413


>gi|89093859|ref|ZP_01166805.1| putative MSHA biogenesis protein MshL [Oceanospirillum sp. MED92]
 gi|89081989|gb|EAR61215.1| putative MSHA biogenesis protein MshL [Oceanospirillum sp. MED92]
          Length = 524

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 106/260 (40%), Gaps = 20/260 (7%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGK 237
           ++ +  ++   +    QV ++  I EV  +   Q G   SI G   SG + +F     G 
Sbjct: 239 ATVRDYLSQAELILHRQVVIEAKILEVTLNNGFQAGVNWSILGEPGSGNTANFTQSSVGL 298

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
              +      K  L    F  V+  L     ++ L+ P ++ ++ Q A    G    + T
Sbjct: 299 TNQDAIGGIFKADLSIGDFSAVIELLGSQGDVQVLSSPRVSTVNNQKAVIKVGTDEFFVT 358

Query: 298 VSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------- 340
              +T           +  +T    G+ L  TP + + G I L I   VSE V       
Sbjct: 359 EVENTTTTGTSTTTSPSIELTPFFSGIALDVTPQISANGDIVLHIHPTVSEVVDQQKQIS 418

Query: 341 IGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           +G +  ++P     +R++D+ V   SG  IV+ GL+K      +   P L  IP +G LF
Sbjct: 419 VGTDDFNIPLALSSIRESDSIVRAESGQVIVIGGLMKSSDSDTQAKTPGLGDIPGVGNLF 478

Query: 399 RNSRFNREETEIFIAATPFL 418
           +  R    +TE+ I   P L
Sbjct: 479 KQKRQAGSKTELVIMLRPVL 498


>gi|127514547|ref|YP_001095744.1| general secretion pathway protein D [Shewanella loihica PV-4]
 gi|126639842|gb|ABO25485.1| general secretion pathway protein D [Shewanella loihica PV-4]
          Length = 707

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 47/284 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----------------------- 218
           + V+N L+I    QV ++  I EV        G Q +                       
Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 396

Query: 219 -------ITGSSSGPSKSFA--------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
                   + S +G   +           D      + G    +   +    F  ++ A+
Sbjct: 397 WAAQDEKASNSCTGSGDNLTCTDNPDKKGDITLLAQALGKVNGMAWGVAMGDFGALIQAV 456

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLH 317
              T    LA P++T +  Q ASF  G +    T S ++         +V   + GV L 
Sbjct: 457 SSDTKSNVLATPSITTLDNQEASFIVGDEVPVLTGSQNSSNGNSNPFQTVERKEVGVKLK 516

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P +     + L I+ EVS   I    G   ++  R+  TTV   SG  +VL GL+ ++
Sbjct: 517 VVPQINEGTTVKLTIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLINEE 574

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +Q+  + +P L  IPILG LF++S   +++  + +   P +++ 
Sbjct: 575 VQESVQKVPFLGDIPILGHLFKSSSSGKKKKNLMVFIKPTIIRD 618


>gi|167625758|ref|YP_001676052.1| pilus (MSHA type) biogenesis protein MshL [Shewanella halifaxensis
           HAW-EB4]
 gi|167355780|gb|ABZ78393.1| pilus (MSHA type) biogenesis protein MshL [Shewanella halifaxensis
           HAW-EB4]
          Length = 557

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 26/264 (9%)

Query: 182 KKVMNLLNIAG---EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +++ N +  A    + QV L+  + EV      Q G         +G +           
Sbjct: 270 RQIRNFIKTAESHLQRQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDITFGTSPTTG 329

Query: 239 VSEGGDFSVKGV----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           +S+     + GV    L+   F T++  L+    +  L+ P +TA + Q A    G    
Sbjct: 330 LSDQISSVLGGVTSIKLEGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEY 389

Query: 295 YKTVSSSTG---ATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV-------S 337
           + T  SST     T +TT D        G+ L  TP +   G + L I   V        
Sbjct: 390 FVTNVSSTTVASNTPITTPDVELTPFFSGIALDVTPQIDEQGNVLLHIHPSVIDIKEQTK 449

Query: 338 EPVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
              I  +  ++P     +R++DT ++  SG  +V+ GL+K +  ++   +PLL  IP LG
Sbjct: 450 IIKISGSTLELPLAQSEIRESDTVIKAASGDVVVIGGLMKSENTEIVSKVPLLGDIPFLG 509

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
             F N   +  +TE+ I   P +V
Sbjct: 510 EAFTNRANSTVKTELVILLKPIVV 533


>gi|167571519|ref|ZP_02364393.1| type II/III secretion system protein [Burkholderia oklahomensis
           C6786]
          Length = 555

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              +    +G      A   G F
Sbjct: 315 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRATGVVAGRNGTLADLTARPIGGF 374

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 375 DAATAGLTLFAARASRLLDVELSALESEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 433

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +        +G      P+   +   T
Sbjct: 434 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDLDIAKD--SVGEETASGPAIHTKHVQT 491

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 492 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRALRAQRSELVVYITPTV 551

Query: 419 V 419
           V
Sbjct: 552 V 552


>gi|42523102|ref|NP_968482.1| general secretion pathway protein D [Bdellovibrio bacteriovorus
           HD100]
 gi|39575307|emb|CAE79475.1| general secretion pathway protein D [Bdellovibrio bacteriovorus
           HD100]
          Length = 765

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 125/346 (36%), Gaps = 36/346 (10%)

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           +   ++    D   +  TL+    D+  +       +   G  + +Q  Q          
Sbjct: 364 VYVYNVR-HGDAEKIAQTLQGVTKDAAPKPATGGSLLSPLGS-QGMQAPQEIFGGDVKIT 421

Query: 169 SQSGRNQYANSSSKK----VMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
           +    N    ++SK+    V+N+L+      DQV ++  I E+  +     G  +   G 
Sbjct: 422 ADKTTNSLIVTASKQDYDVVLNILSKIDTPRDQVFVEAIIMEMSVNDGNSWGIGYYQYGD 481

Query: 223 SSGPSKSFA--ADFGGKFVSEGGDFSVKGVLDR----------------FSFETVLHALE 264
           S      F   ++        GG  +V G                     S    ++ L+
Sbjct: 482 SGYGKVGFNGLSNINDFLSPTGGSGAVIGFGQGKTVEVTDPVSKTTLKIPSLLGFINFLK 541

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFT 319
            A     L+ P L  +  Q      G + +      + G +  T       D  + L   
Sbjct: 542 TAKKANILSTPQLMTLDNQEGELEVGDKVVVGENVQNVGTSGTTVRTPQFEDATIKLAIK 601

Query: 320 PTVLS-PGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           P +     +I + I+ +V++                   R   T + + +G T+VL GL+
Sbjct: 602 PFISPASNQIRMEIKQQVAQLSTASTPKAFQDSTQPLAKRSLKTVINVNNGDTVVLGGLM 661

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           K+  Q+    +PLL  IPI+G LF++    +++T + +  TP +V+
Sbjct: 662 KEQDQESVTKVPLLGDIPIIGWLFKSRTIVKDKTNMVVFLTPKIVR 707


>gi|218778338|ref|YP_002429656.1| type IV pilus secretin PilQ [Desulfatibacillum alkenivorans AK-01]
 gi|218759722|gb|ACL02188.1| Type IV pilus secretin PilQ [Desulfatibacillum alkenivorans AK-01]
          Length = 844

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 112/264 (42%), Gaps = 28/264 (10%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPS------------ 227
           ++ +++ L+     QV ++  + E +    + IG   +  +G   G S            
Sbjct: 580 ARDIVSRLDRVTA-QVQIEARVVEAQTTFSRSIGLAWNGESGIQPGDSREGVGPQRGYDV 638

Query: 228 --KSFAADFGGKFVSE---------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
              ++  ++   + +E         G +FS    L   S    L+A E    I+ ++ P 
Sbjct: 639 LGGTYGYNWSVNYPTETDDYGNNTFGFNFSRLLGLTPLSLNATLNAAESRGEIKIVSSPK 698

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           +  +  + A+   G  +  K      G T +      + L  TP V    R+ +++  E 
Sbjct: 699 IRTLDNKPATIKQGIDYPIKQF-DGDGNTVIVYKAVDLQLEVTPHVTQDRRVSMKMTVEK 757

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           +   +G    +  S+  ++ DT + +  G T+V+ G++K   +   +G P L  +P+LG 
Sbjct: 758 N--DVGAVISEEQSFNTKEVDTELLVNDGDTVVIGGIIKTTFRDDVDGWPGLIDVPVLGW 815

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           LF++S  + E  E+ +  TP +V+
Sbjct: 816 LFKDSTKSEEREELLVFITPTIVE 839


>gi|76809042|ref|YP_335094.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710b]
 gi|76578495|gb|ABA47970.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710b]
          Length = 575

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G     AA     F
Sbjct: 335 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 394

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 395 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 453

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 454 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 511

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 512 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 571

Query: 419 V 419
           V
Sbjct: 572 V 572


>gi|134283134|ref|ZP_01769835.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 305]
 gi|134245329|gb|EBA45422.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 305]
          Length = 575

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G     AA     F
Sbjct: 335 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 394

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 395 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 453

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 454 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 511

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 512 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 571

Query: 419 V 419
           V
Sbjct: 572 V 572


>gi|167838164|ref|ZP_02465023.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 572

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G      A   G F
Sbjct: 332 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRATGIVAGRNGTLADLTARPIGGF 391

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L  LE     + ++ P +       A    G +  Y+  
Sbjct: 392 DAATAGLTLFAARASRLLDVELSVLEAQGRGQIVSSPRVVTADRTKAIVEQGAELPYQ-A 450

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +        +G      P+   +   T
Sbjct: 451 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDLDIAKD--SVGEETASGPAIHTKHVQT 508

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 509 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 568

Query: 419 V 419
           V
Sbjct: 569 V 569


>gi|83720708|ref|YP_443529.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|257137686|ref|ZP_05585948.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|83654533|gb|ABC38596.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 576

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              +    +G      A     F
Sbjct: 336 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGF 395

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 396 DAATAGLTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 454

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 455 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 512

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 513 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 572

Query: 419 V 419
           V
Sbjct: 573 V 573


>gi|188026465|ref|ZP_02962178.2| hypothetical protein PROSTU_04276 [Providencia stuartii ATCC 25827]
 gi|188019786|gb|EDU57826.1| hypothetical protein PROSTU_04276 [Providencia stuartii ATCC 25827]
          Length = 348

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 106/235 (45%), Gaps = 9/235 (3%)

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
            L++  + QV +   I    R  L+++G +  +   S   S+    +   ++ S  G F+
Sbjct: 119 QLDVP-KQQVQITAHIISSSRTALQELGLEWGMLSGSPNNSRYQRYN---RYDSSSGQFN 174

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  + +      + +ALE+   +  +A P L A     AS   G +  Y T  S+   T 
Sbjct: 175 LLRLGEGLLELKL-NALEKENLLSIIASPRLMASHKHPASIQQGSEIPYVT--STEKKTH 231

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPS 364
           V   D  + +  TPT+     + L ++   + P   +   D    +   ++  T+V + +
Sbjct: 232 VQFKDAVLGMEVTPTLSRGDHVELLLKISHNSPDKAITTSDEHYLAINKQEIATSVTIRN 291

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             T++L G+ +   ++ + G+P LS IP+LG LF N+  + +   + +  TP L+
Sbjct: 292 NETLILGGIFQQKQEKTETGLPFLSNIPLLGKLFTNTGEHIDRRVLVVFITPKLI 346


>gi|254357308|ref|ZP_04973582.1| type IV pilus secretin PilQ [Burkholderia mallei 2002721280]
 gi|148026372|gb|EDK84457.1| type IV pilus secretin PilQ [Burkholderia mallei 2002721280]
          Length = 552

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G     AA     F
Sbjct: 312 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 371

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 372 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 430

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 431 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 488

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 489 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 548

Query: 419 V 419
           V
Sbjct: 549 V 549


>gi|237653194|ref|YP_002889508.1| general secretion pathway protein D [Thauera sp. MZ1T]
 gi|237624441|gb|ACR01131.1| general secretion pathway protein D [Thauera sp. MZ1T]
          Length = 728

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 105/277 (37%), Gaps = 39/277 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--------- 232
           + V++ L+     QV ++  IAE+  +   + GFQ  + G+S+G      A         
Sbjct: 396 RAVIDQLDRR-RAQVYIEALIAEISTERAAEFGFQW-VAGASAGEVGVLGAQLFNSGGGN 453

Query: 233 -----------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                            + G   V  GG  +V G+ +  S   +   LE   +   L+ P
Sbjct: 454 LGQLIAGSADRTRLTLPNNGLNLVVGGGKVNVPGIGEVLSLGVLARFLENEVSANILSTP 513

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPG 326
            L  +  + A    G    + T   +             ++   D G+ LH  P +   G
Sbjct: 514 NLITLDNEEARIVVGRNLPFVTGQYANTGGGTTPANPFQTIERRDVGLTLHVKPQISEGG 573

Query: 327 RIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            I L+I  E S  V      A        R  ++ V +  G  + L GL++D     +E 
Sbjct: 574 AIRLQIYQEASAVVGSAESAAAGNSVTTKRSIESMVLVDDGAILALGGLVEDSYSGGEEK 633

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +P+L  +P  G+LFR     R +T + +   P +++ 
Sbjct: 634 VPVLGDLPFAGSLFRYDTRKRAKTNLVVFLRPVILRD 670


>gi|171060101|ref|YP_001792450.1| general secretion pathway protein D [Leptothrix cholodnii SP-6]
 gi|170777546|gb|ACB35685.1| general secretion pathway protein D [Leptothrix cholodnii SP-6]
          Length = 753

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 65/315 (20%), Positives = 119/315 (37%), Gaps = 45/315 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------TGSS 223
           + V++ L+ A   QV ++  I ++      + GFQ                     TG +
Sbjct: 397 RGVIDQLD-ARRAQVYVESMIVKMDATQAAEFGFQWQGLLGQSGDRYGLVAGTNFGTGGN 455

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISG 282
           +  + S  A  G      G +  +   ++  ++   +   LE  T    L+ P L A+  
Sbjct: 456 NIVNLSVGAATGAALPGAGLNVGLLKAINGVYTLGALARFLESNTGANVLSTPNLIALDN 515

Query: 283 QSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           + A    G    + T S +   T         ++   D G+ L   P +   G + + I 
Sbjct: 516 EEAKIVIGQNVPFVTGSFTNTGTSNGSANPFQTIERKDVGLTLRVKPQIGEGGTVRMVIY 575

Query: 334 TEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            E S  V         P+      +TTV +  G  +VL GLLKDD    ++ +P L+ IP
Sbjct: 576 QENSSVVANTTTNSAGPTTDKSAIETTVVVDDGSIMVLGGLLKDDYGSGEDRVPGLASIP 635

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           ++G LFR+    R ++ + +   P +++                + DA A   +R + I 
Sbjct: 636 LIGGLFRSENRKRTKSNLLVFLRPVVMR---------------SQQDANALTLDRYDAIR 680

Query: 453 GPKEASEVEGQNYKG 467
             +   + +     G
Sbjct: 681 AQQMNEQPKPSTVLG 695


>gi|78046312|ref|YP_362487.1| type II secretory pathway protein D [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034742|emb|CAJ22387.1| type II secretory pathway protein D [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 689

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 152/427 (35%), Gaps = 65/427 (15%)

Query: 100 ILIGHDGKQMLNLDILIER----DIAHLEMTLRRFIADSNIRVEMVS--------DTVVL 147
             +  DG+     D+ + R        L   L++ +  +                D    
Sbjct: 242 TAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQDTRSTAMDVAAA 301

Query: 148 HGMVRTIQDSQRA------VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
            G  +T   +  A      V    +       +     +   V+  L++   +QV ++  
Sbjct: 302 SGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDVH-REQVLVEAI 360

Query: 202 IAEVRRDILKQIGFQHSITGSS----------SGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           + E+     K++G Q  + G +          SG S            +  G+     VL
Sbjct: 361 VVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGTRSGNADDDSVL 420

Query: 252 -------------------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                                    +   F  ++ A++  T    L+ P++  +  + A 
Sbjct: 421 EQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNEQAR 480

Query: 287 FTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
              G +    T      ++     ++   D GV L   P + + G I L I+ EVS    
Sbjct: 481 ILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSAIAG 540

Query: 342 GVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            V+A      +  R+ +T V + +G  + L GLL  + +Q  E +PLL  +P LGALFR+
Sbjct: 541 PVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRH 600

Query: 401 SRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY----SVEDDAKAFFFNRVNKIYGPK 455
              NR++T + +   P +++  A  + ++ P  +Y     + D       + + + Y   
Sbjct: 601 KSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYNYLRERQLADGDPEAALDALVRDYLRA 660

Query: 456 EASEVEG 462
           +  ++  
Sbjct: 661 QPPQLPA 667


>gi|283851919|ref|ZP_06369195.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
 gi|283572643|gb|EFC20627.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
          Length = 542

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 120/298 (40%), Gaps = 23/298 (7%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDI 209
           +  +D   ++++     S +       ++  +V N+L    +   QV++   + EV  D 
Sbjct: 222 KDGKDGSASLQILPLKGSNTVVVTALPAAQSQVANILANMDKRTPQVSISAMLVEVILDE 281

Query: 210 LKQIGFQHSITGSSSGPSKS-FAADFGGKFVSEGGDFSVKG----------------VLD 252
             ++G    +   SS  + + FA D   K +  G   +                   +  
Sbjct: 282 SSKMGLDWKLRAWSSNKAYNEFAQDTLAKTLETGSQSASANLAKYSDAGTKAAMFFNIFP 341

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVT 308
                 ++H +   T  + L+ P L     Q AS + G +      Y+T +++    + +
Sbjct: 342 GGYLSMLVHMISSDTNAKILSSPHLLVADNQEASISLGREIPILKEYRTDTNNDPIKTYS 401

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
              +G+ L  TPT+   G + L++  ++S         D      R ADTTV +    T+
Sbjct: 402 QRTFGLELKMTPTIADNGDVTLKVSQKLSNLDEQDTTNDTYKASERTADTTVVVHDKQTL 461

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           V+ GL     ++   G P   KIP+LG LF     ++++ E+ +  TP +V+     D
Sbjct: 462 VIGGLTMQTDEKEDSGTPTARKIPVLGYLFGTKSTSKQKRELLLFITPTVVRDPIQAD 519


>gi|167620691|ref|ZP_02389322.1| type II/III secretion system protein [Burkholderia thailandensis
           Bt4]
          Length = 572

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              +    +G      A     F
Sbjct: 332 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGF 391

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 392 DAATAGLTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 450

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 451 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 508

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 509 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 568

Query: 419 V 419
           V
Sbjct: 569 V 569


>gi|312795821|ref|YP_004028743.1| Fimbrial assembly protein pilQ precursor [Burkholderia rhizoxinica
           HKI 454]
 gi|312167596|emb|CBW74599.1| Fimbrial assembly protein pilQ precursor [Burkholderia rhizoxinica
           HKI 454]
          Length = 655

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 98/251 (39%), Gaps = 27/251 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------------------- 229
               QV ++  I E      + +G + ++     G S +                     
Sbjct: 304 RPTRQVLIEARIVEADDGFSRALGARVAMLKRDGGDSPTSSGEMASQGNTGAGLRGPMVD 363

Query: 230 -FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             AA   G   +  G   +   + R   +  L+ALE     R ++ P +       A   
Sbjct: 364 LLAAPLSGFAPASAGIGLLSASVSRL-LDIELNALEMQGRGRVVSSPRVITADRFKAVVE 422

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
            G +  Y+T +     ++V      + L   P +   G + L +        +G      
Sbjct: 423 QGAEVPYQTRTQR--GSAVQFRRATLKLEVEPRITPRGHVILDLDIVKD--SVGSETLHG 478

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+   ++  T+VE+ +GGT+ + G+   D +Q +  +P+L  IP++GALFR+   +   +
Sbjct: 479 PAIHTKRVQTSVEVENGGTVAIGGIYSQDDRQDEARVPILGDIPLIGALFRHRIRSDRHS 538

Query: 409 EIFIAATPFLV 419
           E+ I  TP +V
Sbjct: 539 ELIILITPTVV 549


>gi|110835094|ref|YP_693953.1| fimbrial assembly protein pilQ [Alcanivorax borkumensis SK2]
 gi|110648205|emb|CAL17681.1| Fimbrial assembly protein pilQ precursor [Alcanivorax borkumensis
           SK2]
          Length = 723

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 118/342 (34%), Gaps = 19/342 (5%)

Query: 89  LFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFIADSNIRVEMV---SDT 144
           L     G+   ++ G     +    + LI +D       +R  I   +I V+ V   +  
Sbjct: 389 LISNAGGKGEALVSGRGSVVVDQRTNTLIVQDTQAKLQEIRELIDQLDIPVQQVLIEARV 448

Query: 145 VVLHGMVRTI-QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           VV    V          +      + + GR    +   + + NL       Q  +  TIA
Sbjct: 449 VVATNDVTDEFGVRWGGLGFDTESMLEDGRTFGVSGRLQSLRNL------HQTNIDATIA 502

Query: 204 EVRRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
                       +          +        D G    S          L     E  L
Sbjct: 503 YPDTVGGHPGDVEFGPDDFQFQEAENDDDLIVDLGVDSASASRFAVGFTSLASGLIELEL 562

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            ALE       +A P +     Q A   SG Q  ++  +SS GATS+   +  + L  TP
Sbjct: 563 SALEAEGHGELVATPKVLTADQQPAVIASGQQVPFEIATSS-GATSIDFVEAELRLEVTP 621

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            +   G I + ++          ++    +    + +T+V +  G T+VL G+ + +   
Sbjct: 622 HITPDGNIIMMLKVNND----SFSSDGSAAINTNRVETSVLVNDGETVVLGGIFQQEKIN 677

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
                P L  +P +GALFR +     + E+ I  TP L+K  
Sbjct: 678 SVTKTPFLGDLPWIGALFRKTVNRDNKQELLIFITPRLMKDA 719


>gi|53724296|ref|YP_104266.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|52427719|gb|AAU48312.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
          Length = 527

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G     AA     F
Sbjct: 287 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 346

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 347 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 405

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 406 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 463

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 464 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 523

Query: 419 V 419
           V
Sbjct: 524 V 524


>gi|260775597|ref|ZP_05884494.1| MSHA biogenesis protein MshL [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608778|gb|EEX34943.1| MSHA biogenesis protein MshL [Vibrio coralliilyticus ATCC BAA-450]
          Length = 545

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 122/328 (37%), Gaps = 38/328 (11%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           ++E     ++  G  +++  + +A  ++        R        +  + +       QV
Sbjct: 214 QLEQAVSQLIGSGQGQSVVITPQAGVITVRAFPDEIRE------VRSFIGVSQQRLHRQV 267

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------KSFAADFGGKFVSEGGDF 245
            L+  I EV      Q G   S   +S+G +            + A   G   +      
Sbjct: 268 ILEAKILEVTLSDGYQQGIDWSKAFTSNGTNYTIGQGTPTTTGTPATLPGLDTIGTLLGG 327

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302
               V+   SF+ V+  +     +  L+ P +TA + Q A    G    + T  S+    
Sbjct: 328 QTNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDSYFVTDFSTNVDT 387

Query: 303 --------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-------EVSEPVIGVNAGD 347
                       +T    G+ L  TP + + G + L +         E  E   G +   
Sbjct: 388 SSTTSTTSTDIELTPFFSGISLDVTPQIDNDGSVLLHVHPAVIDVTEENKEITNGTSTVS 447

Query: 348 MP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           +P  +  +R++D+ +    G  +V+ GL+K +       +P L  +P LG LFRN+    
Sbjct: 448 LPLATSSIRESDSVIRAQDGDVVVIGGLMKSNTLDRTSKVPFLGDVPALGHLFRNTTQYT 507

Query: 406 EETEIFIAATPFLVK-PVAMRDLSRPDD 432
           E+TE+ I   P +V      +++ R  D
Sbjct: 508 EKTELVILLKPTVVGVNTWQKEIERSRD 535


>gi|609625|gb|AAA58785.1| EpsD [Vibrio cholerae]
          Length = 674

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 135/374 (36%), Gaps = 71/374 (18%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181
           +   L+R I   ++ +    +  V++      +D    ++ +SE   ++ G  Q   S  
Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKR 304

Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216
            +VM       N L +                      QV ++  I E+       +G Q
Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364

Query: 217 HSI-----------TGSSSGP----------------------------SKSFAADFGGK 237
                         TG+S G                             + +   D+   
Sbjct: 365 WGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKL 424

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +          +    +  +++A+   ++   L+ P++T +    ASF  G +    T
Sbjct: 425 ASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVIT 484

Query: 298 VSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
            S++         +V   + G+ L   P +     + L I+ EVS  V+G N      + 
Sbjct: 485 GSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFA 543

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + +
Sbjct: 544 KRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV 603

Query: 413 AATPFLVKPVAMRD 426
              P +++     D
Sbjct: 604 FIKPTIIRDGVTAD 617


>gi|167587730|ref|ZP_02380118.1| type IV pilus secretin PilQ [Burkholderia ubonensis Bu]
          Length = 499

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 114/289 (39%), Gaps = 19/289 (6%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIA 203
           +L G       S+R    +++  +Q      A   ++   +++ ++     QV ++  I 
Sbjct: 182 LLTGAAGQRLLSKRGAAAADSRTNQLFVTDLAPRIAQIAGLIDAIDRP-SRQVRIEARIV 240

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKS-------------FAADFGGKFVSEGGDFSVKGV 250
           E  +   + +G + ++       +                AA   G F +    F++   
Sbjct: 241 EGEQGFSRNLGARLALRARERAAAADGAAFAAGARNALDLAARPLGGFDAATAGFTLFAA 300

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                 +  L ALE     + ++ P +       A    G +  Y+      G + V   
Sbjct: 301 PLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKAIVEQGAELPYQ-AKVGNGVSGVQFR 359

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
              + L   P +   GR+ L +  +V++  +G      P+   +   T VE+  GGT+ +
Sbjct: 360 RATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVEDGGTVAI 417

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G+ +   +     +PLL KIPILGALFR+     + +E+ +  TP +V
Sbjct: 418 GGIYEQLRRDDVTRVPLLGKIPILGALFRHRAQRDQRSELVVFITPTVV 466


>gi|21241466|ref|NP_641048.1| type II secretion system protein D [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106808|gb|AAM35584.1| type II secretion system protein D [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 692

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 153/428 (35%), Gaps = 65/428 (15%)

Query: 100 ILIGHDGKQMLNLDILIER----DIAHLEMTLRRFIADSNIRVEMVS--------DTVVL 147
             +  DG+     D+ + R        L   L++ +  +      V         D    
Sbjct: 245 TAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQVGQDTRLATIDVAAA 304

Query: 148 HGMVRTIQDSQRA------VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
            G  +T   +  A      V    +       +     +   V+  L++   +QV ++  
Sbjct: 305 SGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDVH-REQVLVEAI 363

Query: 202 IAEVRRDILKQIGFQHSITGSS----------SGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           + E+     K++G Q  + G +          SG S            +  G+     VL
Sbjct: 364 VVEISDTAAKRLGVQLLLAGRNGTVPLVATQYSGASPGIVPLAAAAAGTRSGNADDDSVL 423

Query: 252 -------------------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                                    +   F  ++ A++  T    L+ P++  +  + A 
Sbjct: 424 EQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNEQAR 483

Query: 287 FTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
              G +    T      ++     ++   D GV L   P + + G I L I+ EVS    
Sbjct: 484 ILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSAIAG 543

Query: 342 GVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            V+A      +  R+ +T V + +G  + L GLL  + +Q  E +PLL  +P LGALFR+
Sbjct: 544 PVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRH 603

Query: 401 SRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY----SVEDDAKAFFFNRVNKIYGPK 455
              NR++T + +   P +++  A  + ++ P   Y     + D       + + + Y   
Sbjct: 604 KSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYTYLRERQLADGDPEAALDALVRDYLRA 663

Query: 456 EASEVEGQ 463
           +  ++  +
Sbjct: 664 QPPQLPAR 671


>gi|217977094|ref|YP_002361241.1| general secretion pathway protein D [Methylocella silvestris BL2]
 gi|217502470|gb|ACK49879.1| general secretion pathway protein D [Methylocella silvestris BL2]
          Length = 805

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 79/357 (22%), Positives = 143/357 (40%), Gaps = 53/357 (14%)

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
            +    I  +  +++VV+         +Q +  + E  L Q  R +              
Sbjct: 483 LLPGVRIMADAANNSVVI-------YANQESYRIIEKALEQLDRPKL------------- 522

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----ADFGGKFVSEGGDF 245
                QV + +TIAEV  +     G Q  +  S+ G   +         G      GG  
Sbjct: 523 -----QVAIDLTIAEVTLNDTLNYGVQFFLGSSNLGLGANNGFVTNTAAGVPLAQTGGVA 577

Query: 246 SVKGVLDRFSFE--------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           S  G L  F+           +++AL + T ++ L+ P+L  +  Q A+   G +   +T
Sbjct: 578 SAAGTLPGFNLTIGNALSPRAIINALHQYTDVKVLSNPSLVVVDNQVATLQVGDEIPIQT 637

Query: 298 VS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
            S      ++    ++   + G++L   P V   G + L ++ E+S        G  P++
Sbjct: 638 GSATVLSANNAVVNTIDYKNTGIILRVQPRVNFNGNVSLDVEQEISNQAGTSALG--PTF 695

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEI 410
             RK  +++ + SG T++LAGL+ D +   K GIP+  +IP+LG LF NS       TE+
Sbjct: 696 SQRKVKSSILVASGQTVLLAGLISDGVNGTKAGIPVADQIPVLGNLFNNSSNRLVSRTEL 755

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
            I   P +++          D  +  E+       N+V  IY     + +  +  + 
Sbjct: 756 IIFIRPQIIRDGV-------DASFVAEELRSKLRGNKVGDIYPTGAVTPIPLRALQQ 805


>gi|59710966|ref|YP_203742.1| MSHA biogenesis protein MshL [Vibrio fischeri ES114]
 gi|59479067|gb|AAW84854.1| MSHA biogenesis protein MshL [Vibrio fischeri ES114]
          Length = 546

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 104/271 (38%), Gaps = 31/271 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           + QV L+  + EV      Q G   S   +S G +        G            G L 
Sbjct: 267 QRQVILEAKLLEVTLSDGYQQGINWSNLTASLGGTDVVFGQTSGLVQGALPGMDTIGTLL 326

Query: 252 --------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSST 302
                      +F+ VL  ++    +  L+ P +TA + Q A    G    Y T VSS T
Sbjct: 327 GGQTNITVSDGNFQAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGRDEYYVTEVSSVT 386

Query: 303 GA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIG 342
           G+          ++T    G+ L  TP +   G + L +   V +            V G
Sbjct: 387 GSGDNSNASPEVTLTPFFSGISLDVTPQIDDKGNVMLHVHPSVIDVENEVKEIDLGDVGG 446

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           V    +    +R++D+ +   SG  +V+ GL+K         +PLL  +P LG LFRN  
Sbjct: 447 VLKLPLAKSSIRESDSVIRAKSGDVVVIGGLMKSQTVDQVSKVPLLGDVPALGHLFRNVS 506

Query: 403 FNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
              ++TE+ I   P +V       +L R  D
Sbjct: 507 QLTQKTELVILLKPTVVGVDTWQEELERSRD 537


>gi|83859119|ref|ZP_00952640.1| general secretion pathway protein D [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852566|gb|EAP90419.1| general secretion pathway protein D [Oceanicaulis alexandrii
           HTCC2633]
          Length = 661

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 122/309 (39%), Gaps = 49/309 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-------------- 227
           ++V++ L++    QV ++  + E+     + +G Q  + G     +              
Sbjct: 321 EQVISRLDVRRP-QVQVEAIVVEISDQTARDLGVQFLLAGDGDDATPFAYTRYGSTRQPD 379

Query: 228 --------KSFAADFGGKFVSEGGDFSVKGVL-------------------DRFSFETVL 260
                    +     G    +   D +++ +                    D   F  ++
Sbjct: 380 LLALTGALLTGGLSSGDGETTSSTDVNLRNLALSSLVNSRGGSFGFGGELNDGSLFGVIV 439

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTHDYGVV 315
           +AL+  T    L++P L  +  + A+   G +    T  +     S     +     GV 
Sbjct: 440 NALDSDTDSNVLSKPQLMVLDNEEANLMVGQEIPITTGETLGSNNSNPFRQIERESVGVQ 499

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-RKADTTVELPSGGTIVLAGLL 374
           L+  P +     I L+I+ EVS     V+A  +      RK +TTV    G  IVL GL+
Sbjct: 500 LYVRPQINDGDAIRLQIRQEVSSVAGPVSADFVELITNQRKIETTVLADDGEIIVLGGLI 559

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDH 433
           + D Q+ + G+P LS+IP  G LFRN   +     + +   P +V+  A MRD++R    
Sbjct: 560 ETDEQEAESGVPGLSRIPGAGRLFRNDSRSTTRRNLMVFIRPTIVRDAASMRDVTRMSYD 619

Query: 434 YSVEDDAKA 442
           Y+V    +A
Sbjct: 620 YAVGQQREA 628


>gi|134294486|ref|YP_001118221.1| type IV pilus secretin PilQ [Burkholderia vietnamiensis G4]
 gi|134137643|gb|ABO53386.1| type IV pilus secretin PilQ [Burkholderia vietnamiensis G4]
          Length = 550

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 101/250 (40%), Gaps = 17/250 (6%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------SGPSKS 229
           ++++ ++     QV ++  I E  +   + +G + ++                 +  +  
Sbjct: 272 ELIDAID-RASRQVRIEARIVEGEQGFSRNLGARVALRAHGRAPAADGAAAATDTRNALD 330

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             A   G F +    F++         +  L ALE     + ++ P +       A    
Sbjct: 331 LTARAIGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQ 390

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
           G +  Y+      G + V      + L   P +   GR+ L +  +V++  IG      P
Sbjct: 391 GSEVPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGP 447

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   +   T VE+  GGT+ + G+ +   +     +PLL +IP+LGALFR+   + +  E
Sbjct: 448 AIHTKHVQTRVEVEDGGTVAIGGIYEQLRRDDVTHVPLLGRIPVLGALFRHRARSDQRNE 507

Query: 410 IFIAATPFLV 419
           + +  TP +V
Sbjct: 508 LVVFITPTVV 517


>gi|121586611|ref|ZP_01676396.1| general secretion pathway protein D [Vibrio cholerae 2740-80]
 gi|121726696|ref|ZP_01679921.1| general secretion pathway protein D [Vibrio cholerae V52]
 gi|147674158|ref|YP_001218221.1| general secretion pathway protein D [Vibrio cholerae O395]
 gi|153212585|ref|ZP_01948332.1| general secretion pathway protein D [Vibrio cholerae 1587]
 gi|153802934|ref|ZP_01957520.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
 gi|153817437|ref|ZP_01970104.1| general secretion pathway protein D [Vibrio cholerae NCTC 8457]
 gi|153821293|ref|ZP_01973960.1| general secretion pathway protein D [Vibrio cholerae B33]
 gi|153825504|ref|ZP_01978171.1| general secretion pathway protein D [Vibrio cholerae MZO-2]
 gi|153828338|ref|ZP_01981005.1| general secretion pathway protein D [Vibrio cholerae 623-39]
 gi|227082847|ref|YP_002811398.1| general secretion pathway protein D [Vibrio cholerae M66-2]
 gi|229507219|ref|ZP_04396724.1| general secretion pathway protein D [Vibrio cholerae BX 330286]
 gi|229509860|ref|ZP_04399341.1| general secretion pathway protein D [Vibrio cholerae B33]
 gi|229513661|ref|ZP_04403125.1| general secretion pathway protein D [Vibrio cholerae TMA 21]
 gi|229516981|ref|ZP_04406427.1| general secretion pathway protein D [Vibrio cholerae RC9]
 gi|229524711|ref|ZP_04414116.1| general secretion pathway protein D [Vibrio cholerae bv. albensis
           VL426]
 gi|229527341|ref|ZP_04416733.1| general secretion pathway protein D [Vibrio cholerae 12129(1)]
 gi|229606725|ref|YP_002877373.1| general secretion pathway protein D [Vibrio cholerae MJ-1236]
 gi|254285928|ref|ZP_04960890.1| general secretion pathway protein D [Vibrio cholerae AM-19226]
 gi|254851270|ref|ZP_05240620.1| general secretion pathway protein D [Vibrio cholerae MO10]
 gi|255744309|ref|ZP_05418261.1| general secretion pathway protein D [Vibrio cholera CIRS 101]
 gi|262158581|ref|ZP_06029696.1| general secretion pathway protein D [Vibrio cholerae INDRE 91/1]
 gi|262170026|ref|ZP_06037715.1| general secretion pathway protein D [Vibrio cholerae RC27]
 gi|298500452|ref|ZP_07010256.1| general secretion pathway protein D [Vibrio cholerae MAK 757]
 gi|11182423|sp|P45779|GSPD_VIBCH RecName: Full=General secretion pathway protein D; AltName:
           Full=Cholera toxin secretion protein epsD; Flags:
           Precursor
 gi|121549170|gb|EAX59203.1| general secretion pathway protein D [Vibrio cholerae 2740-80]
 gi|121630857|gb|EAX63239.1| general secretion pathway protein D [Vibrio cholerae V52]
 gi|124116456|gb|EAY35276.1| general secretion pathway protein D [Vibrio cholerae 1587]
 gi|124121547|gb|EAY40290.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
 gi|126512023|gb|EAZ74617.1| general secretion pathway protein D [Vibrio cholerae NCTC 8457]
 gi|126521225|gb|EAZ78448.1| general secretion pathway protein D [Vibrio cholerae B33]
 gi|146316041|gb|ABQ20580.1| general secretion pathway protein D [Vibrio cholerae O395]
 gi|148876168|gb|EDL74303.1| general secretion pathway protein D [Vibrio cholerae 623-39]
 gi|149740789|gb|EDM54880.1| general secretion pathway protein D [Vibrio cholerae MZO-2]
 gi|150424110|gb|EDN16049.1| general secretion pathway protein D [Vibrio cholerae AM-19226]
 gi|227010735|gb|ACP06947.1| general secretion pathway protein D [Vibrio cholerae M66-2]
 gi|227014619|gb|ACP10829.1| general secretion pathway protein D [Vibrio cholerae O395]
 gi|229334973|gb|EEO00458.1| general secretion pathway protein D [Vibrio cholerae 12129(1)]
 gi|229338292|gb|EEO03309.1| general secretion pathway protein D [Vibrio cholerae bv. albensis
           VL426]
 gi|229346044|gb|EEO11016.1| general secretion pathway protein D [Vibrio cholerae RC9]
 gi|229349538|gb|EEO14494.1| general secretion pathway protein D [Vibrio cholerae TMA 21]
 gi|229353334|gb|EEO18273.1| general secretion pathway protein D [Vibrio cholerae B33]
 gi|229354724|gb|EEO19645.1| general secretion pathway protein D [Vibrio cholerae BX 330286]
 gi|229369380|gb|ACQ59803.1| general secretion pathway protein D [Vibrio cholerae MJ-1236]
 gi|254846975|gb|EET25389.1| general secretion pathway protein D [Vibrio cholerae MO10]
 gi|255737834|gb|EET93227.1| general secretion pathway protein D [Vibrio cholera CIRS 101]
 gi|262021434|gb|EEY40146.1| general secretion pathway protein D [Vibrio cholerae RC27]
 gi|262029742|gb|EEY48391.1| general secretion pathway protein D [Vibrio cholerae INDRE 91/1]
 gi|297540621|gb|EFH76678.1| general secretion pathway protein D [Vibrio cholerae MAK 757]
 gi|327485201|gb|AEA79608.1| General secretion pathway protein D [Vibrio cholerae LMA3894-4]
          Length = 674

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 135/374 (36%), Gaps = 71/374 (18%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181
           +   L+R I   ++ +    +  V++      +D    ++ +SE   ++ G  Q   S  
Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKR 304

Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216
            +VM       N L +                      QV ++  I E+       +G Q
Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364

Query: 217 HSI-----------TGSSSGP----------------------------SKSFAADFGGK 237
                         TG+S G                             + +   D+   
Sbjct: 365 WGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKL 424

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +          +    +  +++A+   ++   L+ P++T +    ASF  G +    T
Sbjct: 425 ASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVIT 484

Query: 298 VSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
            S++         +V   + G+ L   P +     + L I+ EVS  V+G N      + 
Sbjct: 485 GSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFA 543

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR++    E+  + +
Sbjct: 544 KRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV 603

Query: 413 AATPFLVKPVAMRD 426
              P +++     D
Sbjct: 604 FIKPTIIRDGVTAD 617


>gi|237814100|ref|YP_002898551.1| type IV pilus secretin PilQ [Burkholderia pseudomallei MSHR346]
 gi|237503013|gb|ACQ95331.1| type IV pilus secretin PilQ [Burkholderia pseudomallei MSHR346]
          Length = 552

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G     AA     F
Sbjct: 312 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 371

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 372 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 430

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 431 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 488

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 489 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 548

Query: 419 V 419
           V
Sbjct: 549 V 549


>gi|114568932|ref|YP_755612.1| general secretion pathway protein D [Maricaulis maris MCS10]
 gi|114339394|gb|ABI64674.1| general secretion pathway protein D [Maricaulis maris MCS10]
          Length = 650

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/320 (22%), Positives = 120/320 (37%), Gaps = 55/320 (17%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------------- 224
           V+  L+I    QV ++  I E+     +++G Q  + G                      
Sbjct: 322 VIRQLDIRRP-QVLVEGIIVEMSDSTARELGVQMLLAGGEGDTPLAMTRFSSNNPDLLAL 380

Query: 225 -GPSKSFAAD------------FGGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIR 270
            G + S   D                  + GG     G     + F  VL+A+E      
Sbjct: 381 TGAATSPGDDDSDLNVSLRDAAINSLLGASGGTLGFGGQNGSGNLFGLVLNAVESDVNSN 440

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSP 325
            LA P++ A+  + A F SG +    T      +++    +V   + GV L   P +   
Sbjct: 441 VLATPSIMALDNEEAYFLSGQEIPVTTGEALGSNNTNPFRTVDREEVGVKLTVLPQITEG 500

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             + L I  EVS     VNAG        R+  TTV   +G  IVL GL++ + +  ++G
Sbjct: 501 NTVRLHIVQEVSSVAGAVNAGSSDLITNKREISTTVLADNGEIIVLGGLIQQEDEISEDG 560

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +P L ++P +G LFR+       T + +   P +++                E D +A  
Sbjct: 561 VPGLRRLPGVGRLFRSEGSTTRRTNLMVFIRPTIIR---------------SEADMQALT 605

Query: 445 FNRVNKIYGPKEASEVEGQN 464
            NR + I   + A    G +
Sbjct: 606 DNRYDFIRNEQIAGSPNGTS 625


>gi|153834019|ref|ZP_01986686.1| msha biogenesis protein mshl [Vibrio harveyi HY01]
 gi|148869663|gb|EDL68649.1| msha biogenesis protein mshl [Vibrio harveyi HY01]
          Length = 544

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/278 (22%), Positives = 109/278 (39%), Gaps = 27/278 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ + +     + QV L+  I EV      Q G   S   +S G S S   D     +  
Sbjct: 257 REFLGVSQERMQRQVILEAKILEVTLSDGYQQGINWSNMSASIGNSGSIVVDRNPAKLPL 316

Query: 242 GGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
               ++ G          +F+ V++ +     +  L+ P +TA + Q +    G    + 
Sbjct: 317 DAIGTLLGGQTNVTFSDGNFKAVMNFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFV 376

Query: 297 TVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGV 343
           T  SS               +T    G+ L  TP + + G + L +     EV E +  +
Sbjct: 377 TELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQL 436

Query: 344 NAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           N G         +    +R++D+ +    G  +V+ GL+K    +    +P L  +P LG
Sbjct: 437 NLGGDFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALG 496

Query: 396 ALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
            LFRN     ++TE+ I   P +V      ++L R  D
Sbjct: 497 NLFRNINNVTQKTELVILLKPTVVGVNTWQKELERSRD 534


>gi|254300620|ref|ZP_04968065.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 406e]
 gi|157810585|gb|EDO87755.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 406e]
          Length = 455

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 123/336 (36%), Gaps = 36/336 (10%)

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           I +   +A L    R+   D++ RV  + + +   G V     +     L      Q   
Sbjct: 123 IWVAP-VAELAERERQRF-DAHARVAQL-EPLASRGFVLRYARAADVQRLLAGSAGQRIL 179

Query: 174 NQYANSSSKKVMNLLNIAG------------------EDQVTLKVTIAEVRRDILKQIGF 215
           ++  +  +    NLL +                      QV ++  I E  R   + +G 
Sbjct: 180 SKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGA 239

Query: 216 QH------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           +              I    +G     AA     F +     ++         +  L AL
Sbjct: 240 RLALRAPDAGERATGIVAGRNGTLAELAARPISGFDAATAGLTLFAARASRLLDVELSAL 299

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E     + ++ P +       A    G +  Y+      G + V      + L   P + 
Sbjct: 300 EAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQIT 358

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             GR+ L +  +V++  +G      P+   +   T VE+ +GGT+ + G+ + D +    
Sbjct: 359 PDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVT 416

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 417 RVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 452


>gi|289549028|ref|YP_003474016.1| general secretion pathway protein D [Thermocrinis albus DSM 14484]
 gi|289182645|gb|ADC89889.1| general secretion pathway protein D [Thermocrinis albus DSM 14484]
          Length = 637

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 26/289 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------PSKSF 230
           +K++  L++    QV +  ++ E+       +G +  I G+  G            S   
Sbjct: 352 QKLIKKLDVR-RKQVLIAASVVEMSTTKALDLGVRWQILGTQGGGAFGGSTLQDLSSALL 410

Query: 231 AADFGGKFVSEGGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           + +F    +S  G     G  + F      +   LE+ T    L+ P L  +  Q A   
Sbjct: 411 SGNFVLGLLSSSGRSITVGGTNLFFPDLVLLFSLLEKGTGFNLLSNPKLLTLDNQPAEIK 470

Query: 289 SGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVS--EP 339
            G    + +      +     +    + G+ L  TP+V        I L++Q  +    P
Sbjct: 471 VGQVVPFASGVKFDINGQPVITYDYKEVGLDLRITPSVSEKNLRLSISLQVQEIIDFLRP 530

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            IG  +  +P    R+ ++ V + +G TI++ GL+     +  EG+P L  +P+LG LF+
Sbjct: 531 QIGTLSYAVPVTSNRQVNSEVVVENGQTIIIGGLINTRALRSTEGVPGLQDVPVLGWLFK 590

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPD-DHYSVEDDAKAFFFNR 447
                 ++  +FI  TP++++  +  +LSR   +H  + D+ +     R
Sbjct: 591 RKTTQEDKVSLFIFITPYVIE--SPEELSRITQEHQKLADELRKAMEKR 637


>gi|190575670|ref|YP_001973515.1| putative type II/III pilus secretin [Stenotrophomonas maltophilia
           K279a]
 gi|190013592|emb|CAQ47227.1| putative type II/III pilus secretin [Stenotrophomonas maltophilia
           K279a]
          Length = 655

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 115/286 (40%), Gaps = 11/286 (3%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-----QVTLKV 200
           V+   V  +    R V  ++TF  + G     + S        N+   +     QV    
Sbjct: 365 VIDRPVDQVLIESRIVIATDTFARELGARFGISGSRDNAYFSGNLEANEATRKSQVEANA 424

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           T A+  RD L       +     S  ++           +  G  ++  +   +  +  L
Sbjct: 425 TNAKAYRDWLAGGSTGPAPVPVGSAITRGLNWAMPAASTNPAGSLALSILNAGYLLDVEL 484

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLH 317
            A++  +    ++ P +   + + A    G +  Y T+S+  G     +V   +  + L 
Sbjct: 485 SAMQEESRGEVISNPRVVTTNQREALIKQGKEIGYVTISAGAGGVATPNVQFKEVVLELK 544

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            TPT+ +  R+ L +Q +  E    +     G +PS   R+ +T V +  G T+V+ G+ 
Sbjct: 545 VTPTITNDNRVFLNMQVKKDEVDRLIQLEGYGTVPSINRREVNTAVLVEDGQTVVIGGVY 604

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +   +     +P L  +P LG LF+    ++++ E+ +  TP +++
Sbjct: 605 EFTDRNSISKVPFLGDVPFLGNLFKKRGRSKDKAELLVFVTPKVLR 650


>gi|459551|gb|AAA16704.1| fimbrial assembly protein [Pseudomonas aeruginosa PAO1]
          Length = 727

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 104/285 (36%), Gaps = 35/285 (12%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---- 228
           + Q      +++++ L+I    QV ++  I E      K +G +          S     
Sbjct: 441 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKD 499

Query: 229 ------------------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
                                   +  +     FV  G   +  G+   F  + ++  L+
Sbjct: 500 GNIGIKDEDGMNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSGIGIGFITDNIILDLQ 559

Query: 265 RATAI-----RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
                     R +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  T
Sbjct: 560 PVGDGKDRQRRVVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVT 618

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +    RI + ++     P        +P     + +  + +  G TIV+ G+  ++  
Sbjct: 619 PQITPDNRIIVEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQS 678

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           +  E +P L ++P LG LFR       + E+ +  TP ++   A+
Sbjct: 679 KSVEKVPFLGELPYLGRLFRRDTVTDRKNELLVFLTPRIMNNQAI 723


>gi|107024260|ref|YP_622587.1| Type IV pilus secretin PilQ [Burkholderia cenocepacia AU 1054]
 gi|105894449|gb|ABF77614.1| Type IV pilus secretin PilQ [Burkholderia cenocepacia AU 1054]
          Length = 371

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 101/251 (40%), Gaps = 17/251 (6%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---SKSFAADF----- 234
            +++ ++     QV ++  I E  +   + +G + ++      P     SF A+      
Sbjct: 93  GLIDAIDRP-SRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPAAEGASFTANARNALD 151

Query: 235 -----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                 G F +    F++         +  L ALE     + ++ P +       A    
Sbjct: 152 LAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQ 211

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
           G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G      P
Sbjct: 212 GSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGP 268

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   +   T VE+ +GGT+ + G+ +   +     +PLL KIP LGALFR+     +  E
Sbjct: 269 AIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQRNE 328

Query: 410 IFIAATPFLVK 420
           + +  TP +V 
Sbjct: 329 LVVFITPTVVD 339


>gi|154174515|ref|YP_001408333.1| type II and III secretion system protein [Campylobacter curvus
           525.92]
 gi|153793105|gb|EAU00522.2| type II and III secretion system protein [Campylobacter curvus
           525.92]
          Length = 506

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/305 (19%), Positives = 120/305 (39%), Gaps = 29/305 (9%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
             +L+     +      +  +   ++ +G         +  +N +    + QV + V+I 
Sbjct: 181 KAILNNTSEHVSAPDPIINSNAGLITVTGTPSQLRRV-ESYINEVQRRLKKQVIIDVSII 239

Query: 204 EVRRDILKQIGFQHS---------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            V  +   + G   S         + G  + PS +   + G    +  G          F
Sbjct: 240 AVDLNNEYKQGVDWSKFELGFNSYLGGDPTKPSNAGWNNRGNGLSAGFGQTLNIAANLNF 299

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VT 308
           S + +++ LE     + ++ P +T ++ Q A  + G    Y+ +  +  A +       T
Sbjct: 300 SLDGMMNFLETNGKAKVISSPKVTTLNNQQALISVGDNINYRVMEQTDSANALNDRVKTT 359

Query: 309 THDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA-------- 356
              Y    G++L+  P V    +I LRI   +S      +     +  +R+         
Sbjct: 360 YKQYSVFIGILLNLLPEVSDNNKIMLRINPSLSSFKYQEDDVRAQNTNIREIAPDTIQKK 419

Query: 357 -DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V++ SG TIVL GL+     +    +P+L+ IP+LG  F++++   + TE+    T
Sbjct: 420 LSTVVQVNSGDTIVLGGLIGQTKNKQNTAVPILADIPLLGNAFKSTKDAVKTTELIFVIT 479

Query: 416 PFLVK 420
           P +V 
Sbjct: 480 PRVVD 484


>gi|146328722|ref|YP_001209267.1| type IV fimbrial pore PilQ [Dichelobacter nodosus VCS1703A]
 gi|146232192|gb|ABQ13170.1| type IV fimbrial pore PilQ [Dichelobacter nodosus VCS1703A]
          Length = 734

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 92/255 (36%), Gaps = 29/255 (11%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--AADFGGKFVSEG--------- 242
            QV +   +   + +  + +G +  ++   +  S     + +  G     G         
Sbjct: 466 RQVLVDARLVITKDNFARDLGARFGLSFKGTAGSNPIVGSGNLTGTTFYAGMLEEKTIPI 525

Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                              + +  +      +  L AL+       ++ P +    G  A
Sbjct: 526 DNRLGVNLGIASPNVRAPSYGISILGSDVLVDLELQALQNEGRSEVISSPRVVTQDGNQA 585

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
              SG +  Y T+    G+      +  + L  TP V    R+ + I+ +          
Sbjct: 586 KVMSGQEIPYSTL-DDKGSVQTDYKEALLSLEVTPRVTPNDRVNMEIEIKKDRVNWSEQV 644

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P+      +T VE+ +G TIVL G+ + +    +  +PLL  IP++G +F+N+    
Sbjct: 645 LGQPAIDKNLLNTKVEVANGETIVLGGIYEQEQSLSENKVPLLGDIPVVGNVFKNTNKKF 704

Query: 406 EETEIFIAATPFLVK 420
            + E+ I  TP ++ 
Sbjct: 705 TKNELLIFITPRVID 719


>gi|269104067|ref|ZP_06156764.1| MSHA biogenesis protein MshL [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163965|gb|EEZ42461.1| MSHA biogenesis protein MshL [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 565

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 103/273 (37%), Gaps = 35/273 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------- 234
           KK + +     + QV L+  I EV  +   Q G        S G                
Sbjct: 269 KKFLGMSEQRLKRQVILEAKILEVTLNDSYQQGINWGNITRSIGSGGVTIGQPSVVNPVT 328

Query: 235 -------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                  GG  +SE         +   +F  V+  L     +  L+ P +TA + Q A  
Sbjct: 329 GLINTLPGGNDISELLGGQTNITITDGNFSAVMRFLSTQGDLNVLSSPRVTAANNQKAVI 388

Query: 288 TSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
             GG   + T  SS+  +          ++T    G+ L  TP +   G + L +   V 
Sbjct: 389 KVGGDEYFVTNVSSSNVSGDNSTAAPDINLTPFFSGISLDVTPQIDDQGGVLLHVHPAVV 448

Query: 338 EPVIGVNAGDM-----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           +    V + ++               +R++D+ +   SG  +V+ GL+K         +P
Sbjct: 449 DVTDEVKSIELGDKFGTYQLPLAKSSIRESDSIIHAHSGDVVVIGGLMKTSTHDQVSKVP 508

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           LL  IP LG LFRN    +++TE+ I   P +V
Sbjct: 509 LLGDIPGLGNLFRNINKVQQKTELVILLKPTVV 541


>gi|253996449|ref|YP_003048513.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
 gi|253983128|gb|ACT47986.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
          Length = 659

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 157/380 (41%), Gaps = 48/380 (12%)

Query: 67  QDVLVSDPTKADV--VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI------ER 118
             + V D    D   V+ +   +    K V   N +LI    +     ++ +        
Sbjct: 230 TSIFVRDTPIEDAIQVILTTNQL---AKKVLNDNTLLIYPVSRSQEYQELYVRSFYLNSI 286

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D       ++  +   ++ ++   +T+V+     +I+ +++ +   +             
Sbjct: 287 DAKRAMNLIKTVLKSKDVYIDEKLNTLVMRDTAESIEIAEKLIASQDLI----------- 335

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADF 234
                         E +V L+V + E+ R  L+ IG ++    S+       S   + + 
Sbjct: 336 --------------EPEVMLEVEVMEINRRSLENIGVRYPSQVSVGVQGKTSSNGVSTNT 381

Query: 235 GGKF-VSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            G+  ++E  +F+   GV         L+ L + T    LA P +   + + A    G +
Sbjct: 382 PGRLSLAELKNFNSGLGVFTISDPVLALNLLHQDTDTNLLANPQIRVKNREKAKIHVGDK 441

Query: 293 HLYKT-VSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
               T V++STG  + +V   + G+ L   PT+L   ++ +++  EVS     V      
Sbjct: 442 IPVFTSVANSTGFVSQTVNYLEVGIKLDVEPTILLQDQVNIKVGLEVSNITDQVKTDTGV 501

Query: 350 ---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
              +   R A+TT++L +G T +LAGL +DD Q +   +P LS +P +G LF +   ++ 
Sbjct: 502 LAYTIGSRNANTTLQLKNGETQILAGLFRDDGQNISNKVPGLSSLPFIGRLFTDKNNDKR 561

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           + EI +  TP ++  +A  +
Sbjct: 562 KNEIVLLITPRILHNIAPAN 581


>gi|302326451|gb|ADL25652.1| putative bacterial type II/III secretion system protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 585

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/333 (23%), Positives = 136/333 (40%), Gaps = 38/333 (11%)

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMT--LRRFIADSNIRVEMVSDT--VVLHGMV 151
            +++ +     K + ++ +   + ++  +    L +F+  S + V    +   +VL G  
Sbjct: 260 SSSLWVSEEGAKALADVRVFSLKHVSPEKAMAQLSKFMKGSELNVSEYREQNALVLGGSP 319

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           R I  ++  +++ +                           + QVTL   I E R+    
Sbjct: 320 RAIARAEELLKMVD-------------------------VPQMQVTLACVIVEFRKGRSF 354

Query: 212 QIGFQHSITGSSSGPSKSFAA--DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            IG +   T +            DF GK +S+ G F   G+L    FE  L ++E     
Sbjct: 355 AIGVRSGATRNVGERDIQARGFFDFLGKDISKSGAFGKIGILPD-RFELELSSMEENNEA 413

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPG 326
           + LA P +T ++G  A         Y     S     +T   + + G+ L  TPT+   G
Sbjct: 414 KVLARPRVTTLNGNKAELNVTNTVYYLVSQVSADGYPITDYRSFNDGISLELTPTMTQDG 473

Query: 327 RIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            I L +  E+     G + GD P     R   TTV L  G T+ L GL++ +  +++  +
Sbjct: 474 LITLSVSPEI--KTAGRSTGDGPRDISSRNMKTTVVLRDGETLCLGGLIRKNKTEVRSAV 531

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           P L  IPILG LF  +    +E+E+ I  TP +
Sbjct: 532 PFLGSIPILGRLFSYTSEEEDESELAIFITPSV 564


>gi|269961295|ref|ZP_06175661.1| MSHA biogenesis protein MshL [Vibrio harveyi 1DA3]
 gi|269833961|gb|EEZ88054.1| MSHA biogenesis protein MshL [Vibrio harveyi 1DA3]
          Length = 544

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 108/278 (38%), Gaps = 27/278 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ + +     + QV L+  I EV      Q G   S   +S G S S   D     +  
Sbjct: 257 REFLGVSQERMQRQVILEAKILEVTLSDGYQQGINWSNMSASIGNSGSVVVDRNPVSLPL 316

Query: 242 GGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
               S+ G          +FE V+  +     +  L+ P +TA + Q +    G    + 
Sbjct: 317 DAIGSLLGGQTNVTFSDGNFEAVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFV 376

Query: 297 TVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGV 343
           T  SS               +T    G+ L  TP + + G + L +     EV E +  +
Sbjct: 377 TELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKKL 436

Query: 344 NAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           N G         +    +R++D+ +    G  +V+ GL+K    +    +P L  +P LG
Sbjct: 437 NLGGDFQDIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALG 496

Query: 396 ALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
            LFRN     ++TE+ I   P +V      ++L R  D
Sbjct: 497 NLFRNINNVTQKTELVILLKPTVVGVNTWQKELERSRD 534


>gi|167582578|ref|ZP_02375452.1| type II/III secretion system protein [Burkholderia thailandensis
           TXDOH]
          Length = 580

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              +    +G      A     F
Sbjct: 340 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGF 399

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 400 DAATAGLTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 458

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 459 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 516

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 517 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 576

Query: 419 V 419
           V
Sbjct: 577 V 577


>gi|15606504|ref|NP_213884.1| general secretion pathway protein D [Aquifex aeolicus VF5]
 gi|2983708|gb|AAC07271.1| general secretion pathway protein D [Aquifex aeolicus VF5]
          Length = 625

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 25/269 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------FGGKFVS 240
             Q+ L  TI E     + + G +  I G+  G +   ++               G F  
Sbjct: 333 RKQLLLTATIIEASAKSILEAGIRWQILGTHGGAAFKGSSLQDVYNAIKSGNFVIGGFSK 392

Query: 241 EGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298
            G   S+ G+   F     +   LE+ T    ++ P +  +  Q A    G    + T  
Sbjct: 393 SGTTVSIGGIDFFFPDLVFLFSLLEQGTGFNVVSNPKILTLDNQEALIKVGQVVPFPTGI 452

Query: 299 ---SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMP 349
               +     +    D G+ L  TP +     + L I+ ++ E    +          +P
Sbjct: 453 KYDVNGNPIITYDYKDVGLELKITPRIT-GETVRLVIELKLQEITGYLTNEVSGVNYTVP 511

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R+ ++ V + +G T+V+ GL+     +  E IP L  IP++G LFR  R  +++T 
Sbjct: 512 ITSNRELNSDVVVENGRTVVIGGLISRKSLKSTEKIPGLGDIPVMGRLFRYDRDEKDKTS 571

Query: 410 IFIAATPFLV-KPVAMRDLSRPDDHYSVE 437
           +FI  TP+++  P  +  L++  +  + E
Sbjct: 572 LFIFLTPYVITSPQELAKLTQEHEKLARE 600


>gi|294791632|ref|ZP_06756780.1| putative type II and III secretion system protein [Veillonella sp.
           6_1_27]
 gi|294456862|gb|EFG25224.1| putative type II and III secretion system protein [Veillonella sp.
           6_1_27]
          Length = 432

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/312 (24%), Positives = 136/312 (43%), Gaps = 21/312 (6%)

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
            +LI+ D   LE      I+  ++  E       L  +V T+  + +   LSE       
Sbjct: 137 TLLIDSDDETLEKRELYVISPEHLPAES------LKNVVGTVVKNDKMAVLSEQNEVIMH 190

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKS 229
                    + ++  ++     QV L+ TI  + +   K+ GF+ S    TG     + S
Sbjct: 191 LTSGEKRRVETLVRAID-KEPKQVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHS 249

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           + A   GK  +        G   +F  +  L  +E +     +A+P++ A++G++A    
Sbjct: 250 YGAVTFGKTPT--------GEAYKFFVKPELSLMESSGKAVLIAKPSIMALNGETAHILI 301

Query: 290 GGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
           G +      S   G    S    + G+ L++TP + + G +  +I  EVS P++ V+   
Sbjct: 302 GERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITADGGVDAKIHAEVSTPIM-VSEMK 360

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
                 R+A T V L  G  +V+ GL+ +  Q   + IP+L  IP+LG LFR+SR  ++ 
Sbjct: 361 AYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDS 420

Query: 408 TEIFIAATPFLV 419
            E+ +     +V
Sbjct: 421 IEMLMLVRATVV 432


>gi|167847616|ref|ZP_02473124.1| type IV pilus secretin PilQ [Burkholderia pseudomallei B7210]
          Length = 460

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G     AA     F
Sbjct: 220 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 279

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 280 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 338

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 339 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 396

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 397 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 456

Query: 419 V 419
           V
Sbjct: 457 V 457


>gi|197335785|ref|YP_002155116.1| general secretion pathway protein D [Vibrio fischeri MJ11]
 gi|197317275|gb|ACH66722.1| general secretion pathway protein D [Vibrio fischeri MJ11]
          Length = 548

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 104/271 (38%), Gaps = 31/271 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251
           + QV L+  + EV      Q G   S   +S G +        G            G L 
Sbjct: 269 QRQVILEAKLLEVTLSDGYQQGINWSNLTASLGGTDVVFGQTPGLVQGALPGMDTIGTLL 328

Query: 252 --------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSST 302
                      +F+ VL  ++    +  L+ P +TA + Q A    G    Y T VSS T
Sbjct: 329 GGQTNITVSDGNFQAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGRDEYYVTEVSSVT 388

Query: 303 GA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIG 342
           G+          ++T    G+ L  TP +   G + L +   V +            V G
Sbjct: 389 GSGDNSNASPEVTLTPFFSGISLDVTPQIDDKGNVMLHVHPSVIDVENEVKEIDLGDVGG 448

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           V    +    +R++D+ +   SG  +V+ GL+K         +PLL  +P LG LFRN  
Sbjct: 449 VLKLPLAKSSIRESDSVIRAKSGDVVVIGGLMKSQTVDQVSKVPLLGDVPALGHLFRNVS 508

Query: 403 FNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
              ++TE+ I   P +V       +L R  D
Sbjct: 509 QLTQKTELVILLKPTVVGVDTWQEELERSRD 539


>gi|126454219|ref|YP_001067989.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106a]
 gi|242314362|ref|ZP_04813378.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106b]
 gi|126227861|gb|ABN91401.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106a]
 gi|242137601|gb|EES24003.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106b]
          Length = 465

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G     AA     F
Sbjct: 225 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 284

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 285 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 343

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 344 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 401

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 402 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 461

Query: 419 V 419
           V
Sbjct: 462 V 462


>gi|85860506|ref|YP_462708.1| type IV secretion [Syntrophus aciditrophicus SB]
 gi|85723597|gb|ABC78540.1| type IV secretion [Syntrophus aciditrophicus SB]
          Length = 590

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 125/352 (35%), Gaps = 47/352 (13%)

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           + +       +  L   +    +  + + + +     V +++  ++  E+ +        
Sbjct: 238 VNVHMRDVPWDQALETILDIHGLAKKEMGNVI----SVMSLEKKKKDEEVRKAAEKDQIE 293

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
            +      ++ + L       Q++++  I E   + +K +G       S+   S  F A 
Sbjct: 294 AEANRKKREQDL-LAEKGRLRQISIEAKIVEASEEFIKNLGVTWGGAVSARMGSYPFQAA 352

Query: 234 FGGKFVS-------------EGGDFSVKGVLDRFS------------------------- 255
           +G    +              G  ++  G     S                         
Sbjct: 353 YGTNTRTTEGQTNPVSYPYPAGIGYTTSGTGAVLSQAAVNMPGSIIGTPTLGVVIGGSKA 412

Query: 256 -FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
             +  + ALE  ++ + ++ P +T + G +A    G +  Y T     G   V   +  +
Sbjct: 413 VLDVQIAALESTSSGKIISTPKVTTMDGVTAKIKQGEEIPY-TTYDDKGYPRVNFKEAVL 471

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLAG 372
            L  TP++   GRI ++I               GD       + D+ V +  G TIV+ G
Sbjct: 472 KLEVTPSITPDGRISMQINATNDRGDYAKAGILGDNVPIIKNEVDSKVVVEDGTTIVIGG 531

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           + K        G+P LS+IP+LG LF++   +R   ++ I  TP ++  V  
Sbjct: 532 VSKTTDDTSTSGVPWLSRIPVLGWLFKSENTDRTRKQLLIFVTPKIIPDVEP 583


>gi|94496443|ref|ZP_01303020.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
 gi|94424189|gb|EAT09213.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
          Length = 726

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 130/329 (39%), Gaps = 16/329 (4%)

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
              G  ++         I      ++R + ++  +++   + V++  ++  I D+     
Sbjct: 314 NTRGPAIVTRYEGANAIIVAANSDVQRMLGETIRQIDTRREQVLVEAIIVEISDAAAKKL 373

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAG-----EDQVTLKVTIAEVRRDILKQIGFQH 217
             +  +  +     A + S    NLL +AG     +   T    +A        ++    
Sbjct: 374 GVQFLIGSTKTGFAATNYSNASPNLLTLAGAYGANQLGTTTTTVVAPDGTRTTTEVRENS 433

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
            +  +    + +      G     GG     G+     F  +++A++  T    L+ P++
Sbjct: 434 DLASTLQQAAINSLQSATGAIAGLGGSIGSNGI-----FGAIINAVKSDTESNLLSTPSV 488

Query: 278 TAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
             +  Q AS   G Q    T  +          +V   D G+ L   P + + G I L +
Sbjct: 489 MTLDNQKASILVGQQVPVTTGEALSQNFDNQFRTVQRQDVGIKLEVKPQINTGGAIKLFL 548

Query: 333 QTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           + EVS     V N         R+ +TTV +  G  + L GLL D+ ++  E IPLLS I
Sbjct: 549 RQEVSSVAGPVSNDNSDLIINKREIETTVTVDDGEILALGGLLDDNERKTIERIPLLSDI 608

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P +G LF++   +R +T + +   P +++
Sbjct: 609 PGIGELFKSRSRSRTKTNLMVFIRPTILR 637


>gi|170731725|ref|YP_001763672.1| type IV pilus secretin PilQ [Burkholderia cenocepacia MC0-3]
 gi|169814967|gb|ACA89550.1| type IV pilus secretin PilQ [Burkholderia cenocepacia MC0-3]
          Length = 543

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 16/243 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADF----------GGK 237
               QV ++  I E  +   + +G + ++      PS    SF AD              
Sbjct: 272 RPSRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPSAEGTSFTADARNALDLAARPLSG 331

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F +    F++         +  L ALE     + ++ P +       A    G +  Y+ 
Sbjct: 332 FDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ- 390

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                G + V      + L   P +   GR+ L +  +V++  +G      P+   +   
Sbjct: 391 AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQ 448

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T VE+ +GGT+ + G+ +   +     +PLL KIP LGALFR+     +  E+ +  TP 
Sbjct: 449 TRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQRNELVVFITPT 508

Query: 418 LVK 420
           +V 
Sbjct: 509 VVD 511


>gi|156975932|ref|YP_001446839.1| hypothetical protein VIBHAR_03698 [Vibrio harveyi ATCC BAA-1116]
 gi|156527526|gb|ABU72612.1| hypothetical protein VIBHAR_03698 [Vibrio harveyi ATCC BAA-1116]
          Length = 544

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 108/278 (38%), Gaps = 27/278 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ + +     + QV L+  I EV      Q G   S   +S G S S   D     +  
Sbjct: 257 REFLGVSQERMQRQVILEAKILEVTLSDGYQQGINWSNMSASIGNSGSILVDRNPAKLPL 316

Query: 242 GGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
               ++ G          +FE V+  +     +  L+ P +TA + Q +    G    + 
Sbjct: 317 DAIGTLLGGQTNVTFSDGNFEAVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFV 376

Query: 297 TVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGV 343
           T  SS               +T    G+ L  TP + + G + L +     EV E +  +
Sbjct: 377 TELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQL 436

Query: 344 NAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           N G         +    +R++D+ +    G  +V+ GL+K    +    +P L  +P LG
Sbjct: 437 NLGGDFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALG 496

Query: 396 ALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
            LFRN     ++TE+ I   P +V      ++L R  D
Sbjct: 497 NLFRNINNVTQKTELVILLKPTVVGVNTWQKELERSRD 534


>gi|254253479|ref|ZP_04946797.1| Type II secretory pathway component HofQ [Burkholderia dolosa
           AUO158]
 gi|124896088|gb|EAY69968.1| Type II secretory pathway component HofQ [Burkholderia dolosa
           AUO158]
          Length = 549

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 16/240 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-------------SKSFAADFGGKFV 239
             QV ++  I E  +   + +G + ++      P             +   AA   G F 
Sbjct: 280 SRQVRIEARIVEGEQGFSRNLGARLALHAQGRPPPGDGAAPATDTRNALDLAARPLGGFD 339

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +     ++         +  L ALE     + ++ P +       A    G +  Y+   
Sbjct: 340 AATAGLTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ-AK 398

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
              G + V      + L   P     GR+ L +  +V++  +G      P+   +   T 
Sbjct: 399 VGNGVSGVQFRRATLKLEVEPQSTPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTR 456

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VE+  GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 457 VEVEDGGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHQARRDQRSELVVFITPTVV 516


>gi|194367008|ref|YP_002029618.1| type IV pilus secretin PilQ [Stenotrophomonas maltophilia R551-3]
 gi|194349812|gb|ACF52935.1| type IV pilus secretin PilQ [Stenotrophomonas maltophilia R551-3]
          Length = 657

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 114/287 (39%), Gaps = 12/287 (4%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI-----AGEDQVTLKV 200
           V+   V  +    R V  ++TF  + G     + S   V    N+       E QV    
Sbjct: 366 VIDRPVDQVLIESRIVIATDTFARELGAKFGISGSRDNVYFSGNLEANRLTRESQVKTAQ 425

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
             A+  RD +           + S  ++           S  G  ++  +   +  +  L
Sbjct: 426 DNAKAERDWIAGGRVGPPPVATGSTITRGLNWSLPVATASNPGSLALSILNAGYLLDVEL 485

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVL 316
            A++  +    ++ P +   + + A+   G +  Y T+S          +V   +  + L
Sbjct: 486 SAMQEESRGEVISNPRVVTTNQREATIKQGKEIGYVTISGGGTGGVATPNVQFKEVVLEL 545

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGL 373
             TPT+ +  R+ L +Q +  E    +     G +PS   R+ +T V +  G T+V+ G+
Sbjct: 546 KVTPTITNDNRVFLNMQVKKDEVDQLIQLDGYGTVPSINRREVNTAVLVEDGQTVVIGGV 605

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +   +     +P L  +P LG LF+    N+++ E+ +  TP +++
Sbjct: 606 YEFTDRSSISKVPFLGDVPFLGNLFKKRGRNKDKAELLVFVTPKVLR 652


>gi|58580784|ref|YP_199800.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425378|gb|AAW74415.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 673

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 111/286 (38%), Gaps = 48/286 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------------- 222
           +++++ ++    DQV ++  I        + +G +  I G+                   
Sbjct: 383 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNT 441

Query: 223 ---------SSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261
                    + G S +  A              GG   +  G  +   +   F+ +  L 
Sbjct: 442 SAKRASEIANGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELS 501

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLH 317
           A+++      ++ P +   + +      G +  Y T+S S        +V   +  + L 
Sbjct: 502 AMQQEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELK 561

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            TPT+ +  R+ L +  +  E    ++    G +P    R+ +T V +  G T+V+ G+ 
Sbjct: 562 VTPTITNDNRVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVY 621

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 622 EFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 667


>gi|108757430|ref|YP_630733.1| general secretion pathway protein D [Myxococcus xanthus DK 1622]
 gi|108461310|gb|ABF86495.1| general secretion pathway protein D [Myxococcus xanthus DK 1622]
          Length = 863

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 118/329 (35%), Gaps = 58/329 (17%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE-----DQVTLKVTIA 203
           G   T Q ++      +    +   +    +SS    N++ +  +      QV ++  I 
Sbjct: 382 GGPTTTQAAELFSGEVKISADKGSNSLVIVASSADYKNIVQVIQQLDKPRRQVFVEAVIM 441

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKS-----FAADFGGKFVSEGGDFSVKGVLDRF---- 254
           EV  D   ++G       S S  +          +  G+ +      +       F    
Sbjct: 442 EVNLDRNARLGMNLHSGFSLSTSNGDQVPGLIGTNTSGQGLPPSLSLTSLASYGGFLAGI 501

Query: 255 --------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                         +F  VLHA+++++ +  L+ P +     + A  T G    +++  +
Sbjct: 502 QGPVIPALEKLGIPAFGVVLHAMQQSSDVNVLSTPHILTSDNEEAEITVGQNVPFQSGFN 561

Query: 301 STGA-----------------------------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            T                                 +T  +  + L   P +     I L 
Sbjct: 562 PTSLGSLGAGVGGGAGALGGGLLGGLGGLGSLYAPITRQNVELKLTVKPQINESDYIRLV 621

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           I  + +E +   +    P+   R A TTV      T+V+ G+++D   +    +PLL  I
Sbjct: 622 INQQ-TEEIASTDPVLGPTTSRRSAKTTVIARDQETLVIGGIMQDRTLESVSKVPLLGDI 680

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P+LG LFR++   + +T + +  TP++++
Sbjct: 681 PLLGHLFRDTTRRKTKTNLLLFLTPYIIR 709


>gi|91775689|ref|YP_545445.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91709676|gb|ABE49604.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 653

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 156/381 (40%), Gaps = 50/381 (13%)

Query: 67  QDVLVSDPTK---ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI------E 117
             V + +       DV++ S +     GK V   N +LI    +     +  +       
Sbjct: 231 TSVFLRNTPIEEAIDVILASNQ----LGKKVLNDNTLLIYPLSRSQEYQETFVRSFYLSN 286

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            D   L   ++  +   +I ++   +T+V+        D+  A+  +E  +         
Sbjct: 287 TDAKKLMAMIKTVVKTKDIYIDEKLNTLVMR-------DTPEAIRTAEKLI--------- 330

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAA 232
                    +     E +V L+V + E+ R  L+ IG ++    S         + +   
Sbjct: 331 ---------MSQDMAEPEVMLEVEVLEINRRSLENIGIRYPTNVSLDVQGRDTVNGTTTL 381

Query: 233 DFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             G   ++E  +F+   GV         L+ L++ T    LA P +   + + A    G 
Sbjct: 382 TPGKLTINELKNFNSNLGVFSISDPVLALNLLQQDTDTNLLANPHIRVKNREKAKIHVGD 441

Query: 292 QHLYKT-VSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNA 345
           +    T V++STG  + +V   + GV L   PT+L    + ++I  EVS         + 
Sbjct: 442 RIPVLTSVANSTGFISQTVNYIEVGVKLDVEPTILLRDEVSIKIGLEVSNQTDRMETSSG 501

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
               +   R A T + L  G T +LAGL+++D Q++  G+P LSK+P++G LF N+  + 
Sbjct: 502 TVTYTIGTRNASTILRLKDGETQILAGLMRNDEQKITNGVPGLSKLPLIGKLFNNNNNDL 561

Query: 406 EETEIFIAATPFLVKPVAMRD 426
            + EI +  TP ++  +   +
Sbjct: 562 SKKEIALFITPRIISNLTPEN 582


>gi|167740501|ref|ZP_02413275.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
 gi|167826105|ref|ZP_02457576.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
 gi|167896189|ref|ZP_02483591.1| type II/III secretion system protein [Burkholderia pseudomallei
           7894]
 gi|167904571|ref|ZP_02491776.1| type II/III secretion system protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167912835|ref|ZP_02499926.1| type II/III secretion system protein [Burkholderia pseudomallei
           112]
 gi|167920795|ref|ZP_02507886.1| type II/III secretion system protein [Burkholderia pseudomallei
           BCC215]
 gi|254198490|ref|ZP_04904911.1| type IV pilus secretin PilQ [Burkholderia pseudomallei S13]
 gi|254201342|ref|ZP_04907706.1| type IV pilus secretin PilQ [Burkholderia mallei FMH]
 gi|147747236|gb|EDK54312.1| type IV pilus secretin PilQ [Burkholderia mallei FMH]
 gi|169655230|gb|EDS87923.1| type IV pilus secretin PilQ [Burkholderia pseudomallei S13]
          Length = 457

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G     AA     F
Sbjct: 217 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 276

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 277 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 335

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 336 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 393

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 394 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 453

Query: 419 V 419
           V
Sbjct: 454 V 454


>gi|77918000|ref|YP_355815.1| type II and III secretion system protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77544083|gb|ABA87645.1| type II and III secretion system protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 537

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/333 (21%), Positives = 130/333 (39%), Gaps = 41/333 (12%)

Query: 128 RRFIADSNIRVEMVSD-----TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
              ++ S I  E  +D     +V L  MV   +D +R V   +  +           + +
Sbjct: 170 NAMVSGSRIDTESSADFWTELSVALRTMVG-QEDGRRVVIQPQAGVVVVRALPEELRTIE 228

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----FAADFGGKF 238
           + +  +    + QV L+  I EV      Q G   S        +++    FA +     
Sbjct: 229 QYLGTIQGNLQRQVILEAKILEVELGDGYQAGINWSAVNGDVSMAQTRGDIFADNGLADI 288

Query: 239 VSEGGDFSVKGV------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           V   G     G+            L+  +F+  +  LE    ++ L+ P +  ++ Q A 
Sbjct: 289 VGSDGAAVTSGLASGAFGGVFSAALNFKNFQAFIELLETQGDVQVLSSPRIATVNNQKAV 348

Query: 287 FTSGGQHLYKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
              G    + T  SS              ++T    G+ L  TP +   G++ L I   V
Sbjct: 349 IKVGSDEFFVTDVSSDTVTGTTTTTSPDITLTPFFSGIALDVTPQIDPKGKVTLHIHPTV 408

Query: 337 SEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE         +             VR++D+ V   SG  +V+ GL+KD +Q     +PL
Sbjct: 409 SEVSDQTKDITVAGETQTLPLAFSTVRESDSIVAAESGQVVVIGGLMKDQLQNRDASVPL 468

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L ++P +GALFR+++    ++E+ I   P +V+
Sbjct: 469 LGRLPGVGALFRHTQSVSRKSELVILLRPMVVE 501


>gi|254180385|ref|ZP_04886983.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1655]
 gi|254190347|ref|ZP_04896855.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pasteur
           52237]
 gi|254261204|ref|ZP_04952258.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1710a]
 gi|157938023|gb|EDO93693.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pasteur
           52237]
 gi|184210924|gb|EDU07967.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1655]
 gi|254219893|gb|EET09277.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1710a]
          Length = 445

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G     AA     F
Sbjct: 205 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 264

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 265 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 323

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 324 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 381

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 382 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 441

Query: 419 V 419
           V
Sbjct: 442 V 442


>gi|42522439|ref|NP_967819.1| fimbrial assembly protein [Bdellovibrio bacteriovorus HD100]
 gi|39574971|emb|CAE78812.1| fimbrial assembly protein [Bdellovibrio bacteriovorus HD100]
          Length = 726

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 101/245 (41%), Gaps = 16/245 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKF 238
               QV+++  I E +    + IG   S TG+            +  PS +      G  
Sbjct: 467 TQPAQVSIEGKIVEAKESFTRNIGVNWSATGAPIKLGSTARGPVNMNPSFNVNQSAAGSS 526

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +   + +V  +    +    L   E    ++ ++ P +  +S + A      +   + V
Sbjct: 527 GALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQTTEVPVRQV 586

Query: 299 SSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--RVR 354
           + +  AT  +       + L  TP V + G + +++          V++    ++    R
Sbjct: 587 TQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVLVNRQFRGADVSSAGQGAFAVNSR 646

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +A+T V + +G T V+ G+ + D    + G+P   ++P +  LF+    ++E++E+ I  
Sbjct: 647 EANTRVLVKNGQTAVIGGIYQSDATDGEVGVPWFRELPFVSYLFKTKNISKEKSELLIFL 706

Query: 415 TPFLV 419
           TP ++
Sbjct: 707 TPRIM 711


>gi|67641888|ref|ZP_00440653.1| type IV pilus secretin PilQ [Burkholderia mallei GB8 horse 4]
 gi|121600460|ref|YP_994488.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|126439652|ref|YP_001060705.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 668]
 gi|126450056|ref|YP_001082319.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|226198301|ref|ZP_03793872.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pakistan 9]
 gi|251767786|ref|ZP_02268424.2| type IV pilus secretin PilQ [Burkholderia mallei PRL-20]
 gi|254174977|ref|ZP_04881638.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|254206684|ref|ZP_04913035.1| type IV pilus secretin PilQ [Burkholderia mallei JHU]
 gi|121229270|gb|ABM51788.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|126219145|gb|ABN82651.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 668]
 gi|126242926|gb|ABO06019.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|147752226|gb|EDK59292.1| type IV pilus secretin PilQ [Burkholderia mallei JHU]
 gi|160696022|gb|EDP85992.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|225929821|gb|EEH25837.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pakistan 9]
 gi|238522900|gb|EEP86342.1| type IV pilus secretin PilQ [Burkholderia mallei GB8 horse 4]
 gi|243061735|gb|EES43921.1| type IV pilus secretin PilQ [Burkholderia mallei PRL-20]
          Length = 462

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G     AA     F
Sbjct: 222 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 281

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 282 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 340

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 341 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 398

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 399 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 458

Query: 419 V 419
           V
Sbjct: 459 V 459


>gi|269797724|ref|YP_003311624.1| type II and III secretion system protein [Veillonella parvula DSM
           2008]
 gi|269094353|gb|ACZ24344.1| type II and III secretion system protein [Veillonella parvula DSM
           2008]
          Length = 432

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/312 (24%), Positives = 136/312 (43%), Gaps = 21/312 (6%)

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
            +LI+ D   LE      I+  ++  E       L  +V T+  + +   LSE       
Sbjct: 137 TLLIDSDDETLEKRELYVISPEHLPAES------LKNVVGTVVKNDKMAVLSEQNEVIMH 190

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKS 229
                    + ++  ++     QV L+ TI  + +   K+ GF+ S    TG     + S
Sbjct: 191 LTSGEKRRVETLVCAID-KEPKQVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHS 249

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           + A   GK  +        G   +F  +  L  +E +     +A+P++ A++G++A    
Sbjct: 250 YGAVTFGKTPT--------GEAYKFFVKPELSLMESSGKAVLIAKPSIMALNGETAHILI 301

Query: 290 GGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
           G +      S   G    S    + G+ L++TP + + G +  +I  EVS P++ V+   
Sbjct: 302 GERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITADGGVDAKIHAEVSTPIM-VSEMK 360

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
                 R+A T V L  G  +V+ GL+ +  Q   + IP+L  IP+LG LFR+SR  ++ 
Sbjct: 361 AYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDS 420

Query: 408 TEIFIAATPFLV 419
            E+ +     +V
Sbjct: 421 IEMLMLVRATVV 432


>gi|261414950|ref|YP_003248633.1| type II and III secretion system protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371406|gb|ACX74151.1| type II and III secretion system protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 603

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/333 (23%), Positives = 136/333 (40%), Gaps = 38/333 (11%)

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMT--LRRFIADSNIRVEMVSDT--VVLHGMV 151
            +++ +     K + ++ +   + ++  +    L +F+  S + V    +   +VL G  
Sbjct: 278 SSSLWVSEEGAKALADVRVFSLKHVSPEKAMAQLSKFMKGSELNVSEYREQNALVLGGSP 337

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           R I  ++  +++ +                           + QVTL   I E R+    
Sbjct: 338 RAIARAEELLKMVD-------------------------VPQMQVTLACVIVEFRKGRSF 372

Query: 212 QIGFQHSITGSSSGPSKSFAA--DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            IG +   T +            DF GK +S+ G F   G+L    FE  L ++E     
Sbjct: 373 AIGVRSGATRNVGERDIQARGFFDFLGKDISKSGAFGKIGILPD-RFELELSSMEENNEA 431

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPG 326
           + LA P +T ++G  A         Y     S     +T   + + G+ L  TPT+   G
Sbjct: 432 KVLARPRVTTLNGNKAELNVTNTVYYLVSQVSADGYPITDYRSFNDGISLELTPTMTQDG 491

Query: 327 RIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            I L +  E+     G + GD P     R   TTV L  G T+ L GL++ +  +++  +
Sbjct: 492 LITLSVSPEI--KTAGRSTGDGPRDISSRNMKTTVVLRDGETLCLGGLIRKNKTEVRSAV 549

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           P L  IPILG LF  +    +E+E+ I  TP +
Sbjct: 550 PFLGSIPILGRLFSYTSEEEDESELAIFITPSV 582


>gi|167721530|ref|ZP_02404766.1| type II/III secretion system protein [Burkholderia pseudomallei
           DM98]
 gi|167817709|ref|ZP_02449389.1| type II/III secretion system protein [Burkholderia pseudomallei 91]
          Length = 454

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G     AA     F
Sbjct: 214 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 273

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 274 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 332

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 333 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 390

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 391 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 450

Query: 419 V 419
           V
Sbjct: 451 V 451


>gi|291613156|ref|YP_003523313.1| pilus (MSHA type) biogenesis protein MshL [Sideroxydans
           lithotrophicus ES-1]
 gi|291583268|gb|ADE10926.1| pilus (MSHA type) biogenesis protein MshL [Sideroxydans
           lithotrophicus ES-1]
          Length = 614

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 114/281 (40%), Gaps = 38/281 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ ++ +  A   QV ++ TIAEV      Q G   S                 G   S 
Sbjct: 308 QEFIDKVMTAARRQVLIEATIAEVTLSRNYQQGINWSALALGGKGFSLTQLATAGLPSSN 367

Query: 242 GGDFSVKGVLDRF----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            G        +      +    +  L+    ++ L+ P L+ ++ Q+A+       +Y T
Sbjct: 368 TGSMVTLAYNNATSKVGNLSGAVQLLDSFGDVKVLSSPKLSVMNNQTATLKVVDNKVYFT 427

Query: 298 VSSSTGAT--SVTTHD----------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
           ++ + G+T  ++ T             G  ++ TP +     + + ++  ++  +  VN 
Sbjct: 428 ITVTPGSTNGTIVTPPTFSTTAVPVAVGFTMNVTPEINDSDYVTINVRPTITRIIDYVND 487

Query: 345 ---------------------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
                                   +P  R R+ ++ + + SG   VL GL++D+I    +
Sbjct: 488 PNPNLANPCGTGVTSCAVAAIVNRVPEIRTREMESIIRVSSGQIAVLGGLMQDEINNQSD 547

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G+PLL +IP +G+LF+N    + +TE+ I   P ++K  ++
Sbjct: 548 GVPLLDEIPGIGSLFKNRNDTKTKTELVIFLRPVIIKDASL 588


>gi|114778365|ref|ZP_01453212.1| probable pilQ; fimbrial type-4 assembly signal peptide protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114551328|gb|EAU53885.1| probable pilQ; fimbrial type-4 assembly signal peptide protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 793

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 17/248 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------- 245
            QV ++  I E      + +G +   T +S+G   +              D         
Sbjct: 548 QQVMVEARIVEATDTFSRDLGVKWGGTLNSNGGGYTHTVTGAASAPQNVVDLGAAVKAGA 607

Query: 246 ------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                 ++  + +  +    L A E    I+ ++ P +   + Q A      Q  ++  +
Sbjct: 608 GGAIGYTLGTLNNALNLNLELSAAEAEGQIKVVSSPRVFTSNLQEALIEQDQQIPFQVTT 667

Query: 300 SSTG-ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           +ST    S       + L  TP + +  RI +++      PV   N    P+   ++  T
Sbjct: 668 ASTPPVVSYQLKSAKLTLKVTPQITADKRIIMQLVVNKDTPV--ANTVGPPTIDKKQIMT 725

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + + +G T+VL G+          G+P L  IP +G  F+  +  R   E+ I  TP +
Sbjct: 726 KLLVKNGETMVLGGIYTQTTSDQVNGVPGLQNIPFIGNFFKRKQKVRNRNELLIFITPTI 785

Query: 419 VKPVAMRD 426
           +     ++
Sbjct: 786 IADDGPKN 793


>gi|53720777|ref|YP_109763.1| putative secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|52211191|emb|CAH37180.1| putative secretion system protein [Burkholderia pseudomallei
           K96243]
          Length = 442

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G     AA     F
Sbjct: 202 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 261

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 262 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 320

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 321 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 378

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 379 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 438

Query: 419 V 419
           V
Sbjct: 439 V 439


>gi|217424883|ref|ZP_03456380.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 576]
 gi|217392339|gb|EEC32364.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 576]
          Length = 459

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E  R   + +G +              I    +G     AA     F
Sbjct: 219 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 278

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++         +  L ALE     + ++ P +       A    G +  Y+  
Sbjct: 279 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 337

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P +   GR+ L +  +V++  +G      P+   +   T
Sbjct: 338 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 395

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +
Sbjct: 396 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 455

Query: 419 V 419
           V
Sbjct: 456 V 456


>gi|84622715|ref|YP_450087.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366655|dbj|BAE67813.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 649

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 111/286 (38%), Gaps = 48/286 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------------- 222
           +++++ ++    DQV ++  I        + +G +  I G+                   
Sbjct: 359 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNT 417

Query: 223 ---------SSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261
                    + G S +  A              GG   +  G  +   +   F+ +  L 
Sbjct: 418 SAKRASEIANGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELS 477

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLH 317
           A+++      ++ P +   + +      G +  Y T+S S        +V   +  + L 
Sbjct: 478 AMQQEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELK 537

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            TPT+ +  R+ L +  +  E    ++    G +P    R+ +T V +  G T+V+ G+ 
Sbjct: 538 VTPTITNDNRVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVY 597

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 598 EFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 643


>gi|325925811|ref|ZP_08187183.1| Type II secretory pathway protein D [Xanthomonas perforans 91-118]
 gi|325543797|gb|EGD15208.1| Type II secretory pathway protein D [Xanthomonas perforans 91-118]
          Length = 692

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 152/427 (35%), Gaps = 65/427 (15%)

Query: 100 ILIGHDGKQMLNLDILIER----DIAHLEMTLRRFIADSNIRVEMVS--------DTVVL 147
             +  DG+     D+ + R        L   L++ +  +                D    
Sbjct: 245 TAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQDTRSTAMDVAAA 304

Query: 148 HGMVRTIQDSQRA------VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
            G  +T   +  A      V    +       +     +   V+  L++   +QV ++  
Sbjct: 305 SGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDVH-REQVLVEAI 363

Query: 202 IAEVRRDILKQIGFQHSITGSS----------SGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           + E+     K++G Q  + G +          SG S            +  G+     VL
Sbjct: 364 VVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGTRSGNADDDSVL 423

Query: 252 -------------------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                                    +   F  ++ A++  T    L+ P++  +  + A 
Sbjct: 424 EQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNEQAR 483

Query: 287 FTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
              G +    T      ++     ++   D GV L   P + + G I L I+ EVS    
Sbjct: 484 ILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSAIAG 543

Query: 342 GVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            V+A      +  R+ +T V + +G  + L GLL  + +Q  E +PLL  +P LGALFR+
Sbjct: 544 PVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRH 603

Query: 401 SRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY----SVEDDAKAFFFNRVNKIYGPK 455
              NR++T + +   P +++  A  + ++ P  +Y     + D       + + + Y   
Sbjct: 604 KSRNRDKTNLMVFIRPTVIRDAADAQRMTAPRYNYLRERQLADGDPEAALDALVRDYLRA 663

Query: 456 EASEVEG 462
           +  ++  
Sbjct: 664 QPPQLPA 670


>gi|300023665|ref|YP_003756276.1| general secretion pathway protein D [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525486|gb|ADJ23955.1| general secretion pathway protein D [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 773

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 124/291 (42%), Gaps = 20/291 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEV 205
            G   +   S   V ++    +     + +  + KK++ +L+   +   QV +  T+AEV
Sbjct: 440 EGPQSSAATSSDQVRVTPDERNNKLLIKASERNYKKILQILHRVDQPPLQVLINATLAEV 499

Query: 206 RRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
             +   Q G Q  +    G S G   S +       V  G +     +        +L A
Sbjct: 500 TLNKNLQYGVQFFLQKNHGKSGGIGFSTSDALAIAPVMPGLNLIAGNIGSDP--RVILDA 557

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------VSSSTGATSVTTHDYGVV 315
           L + TA+R ++ P++  +  Q A    G Q    T          S     +   + GV+
Sbjct: 558 LAKETAVRIVSSPSVVVLHNQQAILEVGDQVPIITREAQSVINPDSPTVNEIEFKNTGVI 617

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVL 370
           L+ TP + S G + + +Q EVS         D      P+   R+  +T+ + SG  +VL
Sbjct: 618 LNVTPRINSNGLVTMEVQQEVSAVQNTSGQSDAATSLTPTISQRRVTSTIAVQSGQMVVL 677

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIFIAATPFLVK 420
            GL+++++ + K  IP+++KIP LG +      N R  TE+ +   P +++
Sbjct: 678 GGLIREEVSRSKSSIPVINKIPYLGDVLGGETDNGRTRTELVVFIRPIVIR 728


>gi|224373395|ref|YP_002607767.1| type II and III secretion system protein [Nautilia profundicola
           AmH]
 gi|223589657|gb|ACM93393.1| type II and III secretion system protein [Nautilia profundicola
           AmH]
          Length = 449

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 95/252 (37%), Gaps = 19/252 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            + +N LN     +V + V I  V      + G   S        S S A        S 
Sbjct: 180 DRYINDLNNRLHKEVLIDVKIYSVTLSSSHKTGIDWSQL------SLSLADKSVPITASN 233

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----T 297
               +       F+   +L+ L +   + +++ P +  ++ Q A    G    YK     
Sbjct: 234 IIGANAVFKEATFNVGGLLNFLAQNGNVNSISNPKIVTLNNQKALIKVGDTIYYKYASEI 293

Query: 298 VSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDM 348
            + + G  +          GV+L  TP +   G I L I   +S       +  VN    
Sbjct: 294 TTDNNGNPTTEYTIDSKFVGVLLDITPQISDNGEIILSINPRISAFKDATQLSNVNRDMP 353

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +     + V+L    T+VL GL+ DD Q    G+P+L +IPI+  LF +      + 
Sbjct: 354 PDTQDNTMISVVKLKDNDTLVLGGLITDDKQLKVNGVPVLKEIPIIKYLFSSREEITTKK 413

Query: 409 EIFIAATPFLVK 420
           E+    TP ++ 
Sbjct: 414 ELVFVITPHIID 425


>gi|289667997|ref|ZP_06489072.1| fimbrial assembly protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 631

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 104/272 (38%), Gaps = 34/272 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           +++++ ++    DQV ++  I        + +G +  I G       +            
Sbjct: 355 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIAGRQQYGGNTGVISGSTTNNVS 413

Query: 230 --------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                         F    G    +  G  +   +   F+ +  L A++       ++ P
Sbjct: 414 ILNSGIHNVPGGLNFNLPAGTFTTNTAGAIAYTLLGRNFALDMELSAMQEEGRGEVVSNP 473

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLR 331
            +   + +      G +  Y T+S          +V   +  + L  TPT+ +  R+ L 
Sbjct: 474 RIVTSNQREGVIKQGREIGYVTISGGGAGGQSQANVQFKEVLLELKVTPTITNDNRVFLN 533

Query: 332 IQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           +  +  E    ++    G +P    R+ +T V +  G T+V+ G+ +   ++    +P L
Sbjct: 534 MNVKKDEVARFIDLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESIAKVPFL 593

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 594 GDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 625


>gi|197117672|ref|YP_002138099.1| type II secretion system secretin lipoprotein PulQ [Geobacter
           bemidjiensis Bem]
 gi|197087032|gb|ACH38303.1| type II secretion system secretin lipoprotein PulQ [Geobacter
           bemidjiensis Bem]
          Length = 868

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 135/346 (39%), Gaps = 43/346 (12%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           VRT+   ++     E               ++K++   ++   + V L+V + E+ +   
Sbjct: 286 VRTMLQVKKIYVNEEANALVIRDTPEVIEVARKILEANDVPDAE-VLLEVEVFELSKQNA 344

Query: 211 KQIGF-------QHSITGSSSGPSKSFAADFGGKFV---------SEGGDFSVKGVLDRF 254
           +  G           +T   S  +  F AD  G            S  G  ++  V +  
Sbjct: 345 ETFGLLLSRYATSLGVTAPGSTGTNPFLADTLGAVTTTTTTGTTTSSAGPSNLLNVFNLR 404

Query: 255 SFE-------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---A 304
            +           +  +  +   TL+ P +   + + A F  G +    T SS +G   +
Sbjct: 405 GYNGYLTVPNATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRVPITTTSSPSGGGVS 464

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTT 359
            +V   D GV ++  PT+     + +++  EVS       +    A  + +   R  DT 
Sbjct: 465 VNVQYVDVGVKVNAEPTIQLNNEVAIKLGLEVSSILNEKTIGTDQATTVVTIGTRNLDTV 524

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T ++ GL++      K  + LL  IPILG LF N+   +++TE+ +A TP +V
Sbjct: 525 LSLKDGETSIIGGLIQKTQTDSKSKVFLLGDIPILGPLFSNTSDKKDKTELLLAITPRIV 584

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
           + V + D           +D  AF+  R ++    +  S     ++
Sbjct: 585 RGVTVPD-----------NDVAAFWSGREDEPSSHQPYSSFMEPDF 619


>gi|188578246|ref|YP_001915175.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522698|gb|ACD60643.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 655

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 111/286 (38%), Gaps = 48/286 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------------- 222
           +++++ ++    DQV ++  I        + +G +  I G+                   
Sbjct: 365 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNT 423

Query: 223 ---------SSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261
                    + G S +  A              GG   +  G  +   +   F+ +  L 
Sbjct: 424 SAKRASEIANGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELS 483

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLH 317
           A+++      ++ P +   + +      G +  Y T+S S        +V   +  + L 
Sbjct: 484 AMQQEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELK 543

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            TPT+ +  R+ L +  +  E    ++    G +P    R+ +T V +  G T+V+ G+ 
Sbjct: 544 VTPTITNDNRVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVY 603

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 604 EFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 649


>gi|171913118|ref|ZP_02928588.1| probable general secretion pathway protein D [Verrucomicrobium
           spinosum DSM 4136]
          Length = 888

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 123/290 (42%), Gaps = 35/290 (12%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS----ITGSSSGPSKSFAA---------------- 232
             QV L   I ++      Q+G  +      TGS+SG S +F A                
Sbjct: 571 SPQVYLATVIGQLTLSDGMQMGVDYLQKFVSTGSNSGLSSAFIAGREEIITNNNVADMRD 630

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           +     ++    F++ G L + S +  + ALE     + L+ P++ A++ + A  TSG  
Sbjct: 631 NLITTALANAKGFNIYGQLGQ-SLDVFVSALETTNNFKVLSRPSVFALNNKRAVITSGQS 689

Query: 293 HLYKTVS----------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
                 S          +    T++T  D  + L   P +   G + LR+       V  
Sbjct: 690 IPVPESSLANASSNNNGTGNVTTTITYKDVVLKLEVIPLINPDGDVTLRVAQVNDTVVGN 749

Query: 343 --VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             V   ++P     +  TTV +P+G T+VL GL+ +  ++  EGIP+LS+IP LG LFR 
Sbjct: 750 QIVAQNNVPIIGTEQIATTVTVPTGNTVVLGGLITETDKKDTEGIPVLSRIPGLGRLFRE 809

Query: 401 SRFNREETEIFIAATPFLVKP--VAMRDLSRPDDHYSVEDDAKAFFFNRV 448
              ++E  E+ I   P +V       R   R D    V +DA   F +RV
Sbjct: 810 DVTSKERKELVIFIQPMVVNDDGSLQRASLREDLRTKVGEDAYKVFPDRV 859


>gi|46199319|ref|YP_004986.1| competence protein pilQ [Thermus thermophilus HB27]
 gi|17226359|gb|AAL37751.1|AF436067_5 putative secretin PilQ [Thermus thermophilus HB27]
 gi|46196944|gb|AAS81359.1| competence protein pilQ [Thermus thermophilus HB27]
          Length = 757

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 10/234 (4%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L+V I EV+ ++ + +G +      + G   +   D G   +     F     L  
Sbjct: 532 PQVNLRVRIQEVQSNLTRSLGLKW--NSIAGGNVAASILDSGLSLI-----FDSTRSLAA 584

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +    L AL++    R L +   T ++ Q+A   SG     + V +          D G
Sbjct: 585 LNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVND--QVERVPFDVG 642

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           +++  TP + + G+I L I+ EVS  V      GD+  +  +   TT+ +  G T+VL G
Sbjct: 643 LIVEVTPQITADGQILLNIKAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVKDGETVVLGG 702

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L   +  Q ++G+PLL  IP++G LF+       + E+ +  T  ++K  A  +
Sbjct: 703 LTSQESNQSQQGVPLLMDIPLIGELFKQRTNESTDKELLVVITADILKEAASAN 756


>gi|163781944|ref|ZP_02176944.1| putative type II secretion system protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883164|gb|EDP76668.1| putative type II secretion system protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 518

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 104/248 (41%), Gaps = 19/248 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV ++  I E+    + Q G   S        + +         +  GG FS+  V   
Sbjct: 273 KQVLIEAKIVEIALSDVFQYGIDWSTFFRDVFGTGANVTLSQTLSIPTGGFFSLNVVSS- 331

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTTH 310
             F T+++AL     + TL+ P +   +GQ+A   +G    +   + V+ +   T+    
Sbjct: 332 -DFSTLVNALATYGKVYTLSNPRIMVSNGQTALIATGIVTPFFERQAVTITGTTTTQIQE 390

Query: 311 DY-------GVVLHFTPTVLSPGRIGLRIQT-------EVSEPVIGVNAGDMPSYRVRKA 356
           +        GV+L  TP +   G I + I           +  V G    + P   +++ 
Sbjct: 391 NIVKTNVLEGVLLGVTPYIDDNGSIVMNIIPVATRLEGSKTLEVNGQVLAEAPILNIKET 450

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V + +G  +V+ GL+ D     +  +P L  IP+LG LF++ R  +E+ E+ I   P
Sbjct: 451 GTIVRVRNGELVVIGGLIGDVRSVQERKVPGLGDIPVLGYLFKSKRTVKEKRELIIFLRP 510

Query: 417 FLVKPVAM 424
            ++  + +
Sbjct: 511 RIIDNIGL 518


>gi|153868094|ref|ZP_01998196.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           SS]
 gi|152144586|gb|EDN71804.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           SS]
          Length = 219

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 3/197 (1%)

Query: 225 GPSKSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G  ++F                +  G +  +  +  L A++   +   ++ P +   + Q
Sbjct: 23  GQGENFIVSLPAIVEGTPASLGLAIGKIGSYLLQLELSAMQSEGSGEIISSPRIITGNQQ 82

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            A  T G +  Y   +       V      + L  TP +    RI + +  +       +
Sbjct: 83  EAIITQGSEIPYVESAGVGAVAQVQFKQAVLELKVTPQITPDDRINMELSIKKDSVGARI 142

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           N     S   R+  T V + +G T+VL G+ +         +P LS +P++G LF+    
Sbjct: 143 NGN--ISIDKREVKTNVLVDNGDTVVLGGVYERSSSNNITRVPFLSDLPLIGNLFKRRSS 200

Query: 404 NREETEIFIAATPFLVK 420
             +++E+ I  TP ++K
Sbjct: 201 QDDKSELLIFVTPRIIK 217


>gi|294793490|ref|ZP_06758627.1| bacterial type II and III secretion system protein [Veillonella sp.
           3_1_44]
 gi|294455060|gb|EFG23432.1| bacterial type II and III secretion system protein [Veillonella sp.
           3_1_44]
          Length = 412

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/312 (24%), Positives = 135/312 (43%), Gaps = 21/312 (6%)

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
            +LI+ D   LE      I+  ++  E       L  +V T+  + +   LSE       
Sbjct: 117 TLLIDSDDETLEKRELYVISPEHLPAES------LKNVVGTVVKNDKMAVLSEQNEVIMH 170

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKS 229
                    + ++  ++     QV L+ TI  + +   K+ GF+ S    TG     + S
Sbjct: 171 LTSGEKRRVETLVRAID-KEPKQVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHS 229

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           + A   GK  +        G   +F  +  L  +E +     +A+P++ A++G++A    
Sbjct: 230 YGAVTFGKTPT--------GEAYKFFVKPELSLMESSGKAVLIAKPSIMALNGETAHILI 281

Query: 290 GGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
           G +      S   G    S    + G+ L++TP + +   +  +I  EVS P++ V+   
Sbjct: 282 GERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITADDGVDAKIHAEVSTPIM-VSEMK 340

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
                 R+A T V L  G  +V+ GL+ +  Q   + IP+L  IP+LG LFR+SR  ++ 
Sbjct: 341 AYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDS 400

Query: 408 TEIFIAATPFLV 419
            E+ +     +V
Sbjct: 401 IEMLMLVRATVV 412


>gi|307720197|ref|YP_003891337.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978290|gb|ADN08325.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 709

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 115/254 (45%), Gaps = 20/254 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             Q  ++VT+A+V       +GF+++IT  ++G  K+            GG   +  V  
Sbjct: 454 PLQTLVEVTVADVDMTDTFSLGFEYAITNQNAGLVKNI-------LNITGGGSGLGVVFK 506

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----------SSST 302
               E+ ++A      +  +++P L  ++ ++ +   G Q    T           S  +
Sbjct: 507 GNHLESTINAYAEKKLLDIISKPKLLILNNKTGNINVGTQVPIITSQVSAADLGSSSQPS 566

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVE 361
              +++  + G++L+ TPT+ S G + + I   +S+  +   +  + P    R   TT  
Sbjct: 567 INQNISYKNTGIILNITPTINSNGVLTMNISITLSDAQLNDTSTINSPLIINRSLQTTAV 626

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + SG +I+L GL+  +  + K G+PLL  IP +G +F ++     ++E+ I   P ++K 
Sbjct: 627 VQSGDSILLGGLISQNKSKSKGGVPLLKDIPWIGNMFASNSIKTTKSELIILIRPVIIK- 685

Query: 422 VAMRDLSRPDDHYS 435
              ++++     + 
Sbjct: 686 -TPQEINSETYKFK 698


>gi|167032058|ref|YP_001667289.1| general secretion pathway protein D [Pseudomonas putida GB-1]
 gi|166858546|gb|ABY96953.1| general secretion pathway protein D [Pseudomonas putida GB-1]
          Length = 584

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 103/267 (38%), Gaps = 26/267 (9%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ + ++  L+I    QV ++  IAEV     +++G Q        G         G   
Sbjct: 272 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 330

Query: 239 --------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                                + G    +      F+F  +++AL+  +    L+ PTL 
Sbjct: 331 ANIAGAAASGDNEALGDLLSTTAGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLL 390

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    AS   G +  + T S +        ++   + GV L   P +     + L I  
Sbjct: 391 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQ 450

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           EVS       A D+ +   R+  T V +   G ++L GL+ D++    + +PLL  IP L
Sbjct: 451 EVSSIADSSAASDVIT-NKREIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYL 509

Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421
           G LFR+      +  + +   P +++ 
Sbjct: 510 GRLFRSDASKNTKQNLMVFIRPRILRD 536


>gi|57169056|ref|ZP_00368183.1| general secretory pathway protein D [Campylobacter coli RM2228]
 gi|305432265|ref|ZP_07401428.1| general secretory pathway protein D [Campylobacter coli JV20]
 gi|57019514|gb|EAL56205.1| general secretory pathway protein D [Campylobacter coli RM2228]
 gi|304444613|gb|EFM37263.1| general secretory pathway protein D [Campylobacter coli JV20]
          Length = 472

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 109/270 (40%), Gaps = 16/270 (5%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K  +  L    + QV + V+I  V  +     G              S   +   +  + 
Sbjct: 202 KAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNFNIGLNSQTSDNTNSFMQIQNG 261

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G     G+    +F+++++ L ++     L+ P L A++ Q A  + G    Y+   SS
Sbjct: 262 QGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKESS 321

Query: 302 TGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA------- 345
            G  + TT            G++L+  P +   G+I LRI   +S+     +        
Sbjct: 322 KGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPR 381

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P    +K  + V++ +  T++L GL+  +  Q    +  LSKIPILG+LFR+   N 
Sbjct: 382 TIAPDTIQKKLSSVVQVENNQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENS 441

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
             TEI    TP +V    +  L      Y+
Sbjct: 442 NITEIVFIITPSIVDNTHIPSLRELGFKYN 471


>gi|118592650|ref|ZP_01550040.1| general secretion proteinD [Stappia aggregata IAM 12614]
 gi|118434701|gb|EAV41352.1| general secretion proteinD [Stappia aggregata IAM 12614]
          Length = 789

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 128/289 (44%), Gaps = 16/289 (5%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------KKVMNLLNIAGEDQVTLK 199
           L G +  + D++R+ E + + +     N     S        + V+  L++    QV ++
Sbjct: 445 LSGRLNRLADTRRSSEEAVSIVPDVRNNALLVHSKFRQFKRIRDVVRTLDVPLA-QVVIE 503

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
            TI EV  +   + G Q  ++G       S   D                 +D  +   V
Sbjct: 504 ATIVEVALNDRLKYGVQAFLSGEGVEIRSSRLPDPADTGEPGAVALFDVDSVDGTTATFV 563

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-------ATSVTTHDY 312
           L AL+  T ++ ++ P LT + G++A  + G Q  +    ++            +   D 
Sbjct: 564 LEALQTVTELKVISSPYLTVLDGKAARLSVGDQIPFLVQQTNASETGTTTTTNQIEVRDV 623

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLA 371
           GV+L  TP++     + L +Q EVS      +  ++ P    R  ++ V + SG   +L 
Sbjct: 624 GVILQVTPSIRPDNSVLLNVQQEVSSAKSSGSGENLTPVISQRTINSDVVIESGKMALLG 683

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           GL++   +++   +PL+SK+PI+G LF+ +   ++ TE+ +  TP +V+
Sbjct: 684 GLIQSRSEEVTTKVPLMSKMPIVGNLFKQTDAVKDRTELLVMITPRVVR 732


>gi|320451127|ref|YP_004203223.1| general secretion pathway protein [Thermus scotoductus SA-01]
 gi|320151296|gb|ADW22674.1| general secretion pathway protein [Thermus scotoductus SA-01]
          Length = 754

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/310 (23%), Positives = 129/310 (41%), Gaps = 17/310 (5%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
                 L   L+  +     +V              T Q +  A E + T +    +   
Sbjct: 461 NAKATELAKVLQEALQARQAQVPQSQAQP----QAPTRQATVVADERTNTLIVTGTQEDL 516

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
           A    + ++  L+ A   QV L+V I EV+ +  + +G + +    + G   +   D G 
Sbjct: 517 A--LVEGLIPKLDQAVP-QVNLRVRIQEVQSNFTRNLGIKWNTI--AGGNVAASILDSGL 571

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +     F     L   +    L AL+R    R L +   T ++ Q+A   SG   L +
Sbjct: 572 SLI-----FDSTRSLAALNILATLEALQRQGLSRALRDVNQTVLNNQTARLQSGETFLIR 626

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRK 355
            V +          D G+++  TP + + G+I L I+ EVS  V      GD+  +  + 
Sbjct: 627 RVVNDR--VERVPFDIGIIVEVTPQITADGQILLNIKAEVSGNVQRNPVDGDVDRFTKQV 684

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             TT+ +  G T+VL GL   +  Q+++G+PLL  IP++G LF+       + E+ +  T
Sbjct: 685 VTTTLRVRDGQTVVLGGLTSQENTQVQQGVPLLMDIPLIGELFKQRSQETTDRELLVVIT 744

Query: 416 PFLVKPVAMR 425
             ++K  A R
Sbjct: 745 ADILKETASR 754


>gi|119898381|ref|YP_933594.1| general secretion pathway protein D [Azoarcus sp. BH72]
 gi|119670794|emb|CAL94707.1| general secretion pathway protein D [Azoarcus sp. BH72]
          Length = 675

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/335 (22%), Positives = 136/335 (40%), Gaps = 45/335 (13%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
             D       +R+ +   ++ V+   + VV+       +D+  AV L+E           
Sbjct: 280 NADAKQAMTMVRQLVKSKDVFVDEKLNMVVI-------KDTPDAVRLAE----------- 321

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAA 232
                 +V+  L++A  + V L+V + EV R+ L+ +G ++             + + + 
Sbjct: 322 ------RVLASLDVAEPE-VMLEVEVLEVSRNKLQDLGIEYPTQVGYGLLTPNVTSTVST 374

Query: 233 DFGGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISG 282
             G    +  G    KG+++            +   VL+          LA P +   + 
Sbjct: 375 AAGFATSTTLGGELAKGMINLRDRGSLVPYVSNPGAVLNLRAEDGDTSLLANPRIRVKNR 434

Query: 283 QSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           + A    G +    T +++     + SV   D G+ L   P V     + +++  EVS  
Sbjct: 435 EKAKIHIGEKLPVFTTTATANVGVSASVNYLDVGLKLDVEPAVTLEDEVVIKVALEVSSI 494

Query: 340 VIGVNAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           V  V             R A TT+ L +G T VLAGL+ D+ +     +P L ++P++G 
Sbjct: 495 VKEVTGPSSSLAYQVGTRSAATTLRLANGETQVLAGLINDEERSSARRLPGLGELPVVGR 554

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           LF   R +  +TE+ +  TP +V+ V    L+R D
Sbjct: 555 LFSAQRDSNTKTEVVLLITPRIVRNVVAPSLARAD 589


>gi|55981352|ref|YP_144649.1| general secretion pathway protein PilQ [Thermus thermophilus HB8]
 gi|55772765|dbj|BAD71206.1| general secretion pathway protein (PilQ) [Thermus thermophilus HB8]
          Length = 757

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 106/234 (45%), Gaps = 10/234 (4%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV+L+V I EV+ ++ + +G +      + G   +   D G   +     F     L  
Sbjct: 532 PQVSLRVRIQEVQSNLTRSLGLKW--NSIAGGNVAASILDSGLSLI-----FDSTRSLAA 584

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +    L AL++    R L +   T ++ Q+A   SG     + V +          D G
Sbjct: 585 LNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVND--QVERVPFDVG 642

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           +++  TP + + G+I L I+ E+S  V      GD+  +  +   TT+ +  G T+VL G
Sbjct: 643 LIVEVTPQITADGQILLNIKAEISGNVQRNPVDGDVDRFTKQVVTTTLRVKDGETVVLGG 702

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L   +  Q ++G+PLL  IP++G LF+       + E+ +  T  ++K  A  +
Sbjct: 703 LTSQESNQSQQGVPLLMDIPLIGELFKQRTNESTDKELLVVITADILKETASAN 756


>gi|260220229|emb|CBA27559.1| Fimbrial assembly protein pilQ [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 696

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 104/262 (39%), Gaps = 28/262 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------------SITG 221
           ++++  ++IA   QV ++  I E      K +G +                      + G
Sbjct: 432 QQLIAKIDIA-VRQVLIEARIVEASDSFGKSLGVKLGGGGTAAASGDKPGIALGSSYVVG 490

Query: 222 SSSGPSKSFAA--DFGGKFVSEGGDFSVK--GVLDRFSFETVLHALERATAIRTLAEPTL 277
           S++  S +F      G    S  G F+V   G          + ALE     + ++ P +
Sbjct: 491 SAATTSGNFVNLPSTGALGSSTPGQFAVSIFGAGADRFLNLEISALEAEGKGKVVSSPRV 550

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
                  A    G +  Y+  SSS GATS+      + L   P +   G I L +  +V+
Sbjct: 551 VTADQIKALIEQGTELPYQVASSS-GATSIAFRKANLKLEVLPQITPEGNIILTL--DVT 607

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           +  +G +     +   +   T V + +GGT+V+ G+  +     +  +P    +P LG L
Sbjct: 608 KDTVGQSTPAGFAIDTKHVQTQVLVENGGTVVIGGIFTESSTDSETKVPFFGDLPGLGVL 667

Query: 398 FRNSRFNREETEIFIAATPFLV 419
           FRN      + E+ +  TP ++
Sbjct: 668 FRNRAKEITKREMLVFITPKVI 689


>gi|153802182|ref|ZP_01956768.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
 gi|124122256|gb|EAY40999.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
          Length = 404

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/324 (18%), Positives = 123/324 (37%), Gaps = 47/324 (14%)

Query: 148 HGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
            G   T + ++  +   ++T        Q   ++  +V+  L+I    QV ++  I E+ 
Sbjct: 26  TGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVEMA 84

Query: 207 RDILKQIGFQHSI-----------TGSSSGP----------------------------S 227
                 +G Q              TG+S G                             +
Sbjct: 85  EGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNET 144

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            +   D+     +          +    +  +++A+   ++   L+ P++T +    ASF
Sbjct: 145 TTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASF 204

Query: 288 TSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
             G +    T S++         +V   + G+ L   P +     + L I+ EVS  V+G
Sbjct: 205 IVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLG 263

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            N      +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR++ 
Sbjct: 264 ANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTS 323

Query: 403 FNREETEIFIAATPFLVKPVAMRD 426
              E+  + +   P +++     D
Sbjct: 324 SQVEKKNLMVFIKPTIIRDGVTAD 347


>gi|255595286|ref|XP_002536270.1| Fimbrial assembly protein pilQ precursor, putative [Ricinus
           communis]
 gi|223520239|gb|EEF26113.1| Fimbrial assembly protein pilQ precursor, putative [Ricinus
           communis]
          Length = 536

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 113/271 (41%), Gaps = 37/271 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD----FGGK 237
           ++++N ++I    QV ++  I +      K +G +  +  +++  +K           G 
Sbjct: 263 QEILNKIDIP-SRQVLIESRIVQANDTFGKSLGARFGVVKNNALTAKGLNPGNDVLTSGS 321

Query: 238 FVS-----------------------------EGGDFSVKGVLDRFSFETVLHALERATA 268
             S                                  ++  +   F     L A E  + 
Sbjct: 322 LSSTYATGQAKQTTTPDDLNVNLPASATAGTVSSAALTLLRLPAGFLLNMELSAAESDSK 381

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           I+T++ P +   + Q+A+F +G +  Y+  +SS GATSV+     + ++ TP +    +I
Sbjct: 382 IKTISSPRVITANQQTATFDAGTEIPYQQATSS-GATSVSFKKATLGVNVTPQITPDDKI 440

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I  EV++  +G     +PS    K  T V + +G T VL G L +      + +P  
Sbjct: 441 NLDI--EVTKDDVGQIFNGVPSIDTNKVKTKVLVDNGETAVLGGFLIESKNDSNQRVPFF 498

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
           S IP++G LF+++     + E+    TP ++
Sbjct: 499 SSIPVVGNLFKSTLNTHSKKELLFFITPKIM 529


>gi|239814080|ref|YP_002942990.1| general secretion pathway protein D [Variovorax paradoxus S110]
 gi|239800657|gb|ACS17724.1| general secretion pathway protein D [Variovorax paradoxus S110]
          Length = 774

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/309 (20%), Positives = 120/309 (38%), Gaps = 42/309 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA------ 232
           + V++ L+     QV ++  I EV        G Q        +  G + S A+      
Sbjct: 407 RAVIDKLD-GRRAQVMIEALIVEVSAKKAANFGVQWQSALGNNAVIGTNSSLASANILAL 465

Query: 233 -------DFGGKFVSEGGDFSVKG-VLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                  D      S G +  + G +  ++    + +          L+ P L  +  + 
Sbjct: 466 TQALATRDVANVRPSSGLNLGIAGKIGGQYILGAIANFFNSDGDANVLSTPNLLTLDNEE 525

Query: 285 ASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           A    G    + T   ++ +        T+V   D G+ L   PT+   G + + I  E 
Sbjct: 526 AKIVIGQNVPFVTGQYASTSGSVGINPFTTVERKDVGLTLRVRPTINENGTVKMTIFQET 585

Query: 337 SEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           S      +N  + P+   R  +++V +  GG ++L GLL DD     E +P+   IP+LG
Sbjct: 586 STVDGNTINNPNGPTTNKRSIESSVLVEDGGLVMLGGLLSDDYGNTIEKVPVAGDIPVLG 645

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
            LF+N    R ++ + +   P +++  A                 +AF ++R ++I G +
Sbjct: 646 NLFKNEIRTRNKSNLMMFLRPAVMRDGA---------------STEAFAYDRYDEIRGMQ 690

Query: 456 EASEVEGQN 464
           + ++    N
Sbjct: 691 QRTQPNTDN 699


>gi|119475553|ref|ZP_01615906.1| Type II secretory pathway, component PulD [marine gamma
           proteobacterium HTCC2143]
 gi|119451756|gb|EAW32989.1| Type II secretory pathway, component PulD [marine gamma
           proteobacterium HTCC2143]
          Length = 558

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 117/303 (38%), Gaps = 26/303 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           VL G     ++ +R +   +  +           ++++ +N   +    QV L+  I EV
Sbjct: 231 VLVGT----EEGRRVIVTPQAGIIIVRAMPAEIDAAREFLNRAEVIMRRQVVLEAKILEV 286

Query: 206 RRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-SFETVLHAL 263
             +   Q G Q  S+ G+ +G +  F         S     +   V +    F  V+  L
Sbjct: 287 ELNDGYQTGIQWESMGGTLNGNTLDFGVSGSSPVSSNSVGGAFSAVYESVGDFSGVIELL 346

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----------TGATSVTTHDY 312
           E   +++ L+ P ++ ++ Q A    G    + T  S+                +T    
Sbjct: 347 ETQGSVQVLSSPRISTVNNQKAVIKVGTDEFFVTEISNSTTTSTGATTSNPEIELTPFFS 406

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPS--YRVRKADTTVELP 363
           G+ L  TP +     I L I   +SE         +G    ++P     +R+ D+ V   
Sbjct: 407 GIALDVTPQISDNDEIILHIHPSISEVRDQTKVITLGDQTVEVPLALSTIRETDSIVYAR 466

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SG  +VL GL++        G P+L  +P +G LF   R    + E+ I   P ++ P  
Sbjct: 467 SGQVVVLGGLMQTKSVDNNSGTPVLGNLPGVGHLFSQQRNKTVKNELVILLRPVIMGPSG 526

Query: 424 MRD 426
           + D
Sbjct: 527 LPD 529


>gi|282848997|ref|ZP_06258386.1| bacterial type II and III secretion system protein [Veillonella
           parvula ATCC 17745]
 gi|282581272|gb|EFB86666.1| bacterial type II and III secretion system protein [Veillonella
           parvula ATCC 17745]
          Length = 440

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/312 (24%), Positives = 135/312 (43%), Gaps = 21/312 (6%)

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
            +LI+ D   LE      I+  ++  E       L  +V T+  + +   LSE       
Sbjct: 145 TLLIDSDDETLEKRELYVISPEHLPAES------LKNVVGTVVKNDKMAVLSEQNEVIMH 198

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKS 229
                    + ++  ++     QV L+ TI  + +   K+ GF+ S    TG     + S
Sbjct: 199 LTSGEKRRVETLVRAID-KEPKQVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHS 257

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           + A   GK  +        G   +F  +  L  +E +     +A+P++ AI+G++A    
Sbjct: 258 YGAVTFGKTPT--------GEAYKFFVKPELSLMESSGKAVLIAKPSIMAINGETAHILI 309

Query: 290 GGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
           G +      S   G    S    + G+ L++TP + +   +  +I  EVS P++ V+   
Sbjct: 310 GERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITADDGVDAKIHAEVSTPIM-VSEMK 368

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
                 R+A T V L  G  +V+ GL+ +  Q   + IP+L  IP+LG LFR+SR  ++ 
Sbjct: 369 AYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDS 428

Query: 408 TEIFIAATPFLV 419
            E+ +     +V
Sbjct: 429 IEMLMLVRATVV 440


>gi|254498863|ref|ZP_05111570.1| putative MSHA biogenesis protein MshL (pilus type IV) [Legionella
           drancourtii LLAP12]
 gi|254351917|gb|EET10745.1| putative MSHA biogenesis protein MshL (pilus type IV) [Legionella
           drancourtii LLAP12]
          Length = 578

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 113/262 (43%), Gaps = 25/262 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ ++++  + + QV L+  I EV  +   Q+G    + G+S     +F  +        
Sbjct: 265 ERYLDMVQNSMDRQVILEAKILEVNLNNQFQMGINWKLFGASLNALSNF-PEVDIAQADF 323

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              F V    +   F +V+ ALE    ++ L+ P ++A++ QSA+   G    + T  S 
Sbjct: 324 PSAFDVDVHWNPKDFTSVIQALETQGNVQVLSSPRVSAMNNQSAAIKVGFDEFFVTNVSQ 383

Query: 302 TGA-------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------VI 341
                            ++T    G+ L  TP + + G++ L +   VS          +
Sbjct: 384 NQNIVTSSLVTQPILNVNLTPFFSGITLDVTPQIDANGQVTLHVHPTVSLVKDQRKVIDL 443

Query: 342 GVNAG----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           G   G     + +  +R++DT V   +G  +V+ GL++D   +    +P    IP LG L
Sbjct: 444 GTQGGILNLPLANSTIRESDTIVHAKTGQVVVIGGLMQDTTSEGIGQVPWFGNIPFLGTL 503

Query: 398 FRNSRFNREETEIFIAATPFLV 419
            R ++   +++E+ I   P LV
Sbjct: 504 VRATKQTSQKSELVILLRPTLV 525


>gi|288574989|ref|ZP_06393346.1| type II and III secretion system protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570730|gb|EFC92287.1| type II and III secretion system protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 570

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 87/437 (19%), Positives = 155/437 (35%), Gaps = 92/437 (21%)

Query: 55  NKVIILQVP-VDVQDVL-----------VSDPTKADVVVHS-------PRTMY-----LF 90
           N+ I +    VD+QDV            V DP+ A++   +        R ++     L+
Sbjct: 162 NRRISVDFRSVDIQDVFRMLADMMKVNIVLDPSVAEIPPLTMRFDEAPLREVFGYLMRLY 221

Query: 91  G---KNVGQANVI--------LIGHDGKQMLNLDILIERDIAHLEMTL--RRFIADSNIR 137
           G     VG+  VI        ++G +  ++ ++      D+  L   L     I    I 
Sbjct: 222 GLSYAKVGKTLVIGSPEGISKVMGEEKTRVYDVA---YSDVKTLPDMLGGLTTIPKEKIT 278

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           V+     + + G    + D +R ++  +                             QV 
Sbjct: 279 VDERLGRLFVKGSENQLSDFERVLQTVDD-------------------------PGKQVM 313

Query: 198 LKVTIAEVRRDILKQI-------GFQHSITGSSSGPSKSF-------------AADFGGK 237
           L+  I E++ +   ++            ++ SSSG    +               D  G 
Sbjct: 314 LRARIIEIKDEASDELETMLNAVYKHWWLSTSSSGAEGGYSYVKDPDSYNPPTGEDRPGG 373

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
               G +    G       +T L AL  A   + LA P++  +SGQ AS        Y +
Sbjct: 374 IEFPGIEIPDIGTGGIRLLDTGLKALVTANKGKVLANPSVITVSGQKASIKLVENLKYIS 433

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVR 354
                G  + +  + G  L FTP V   G I + +     E +    G    + P    R
Sbjct: 434 ARDDAGNPTYSDEEVGPKLEFTPLVGRDGVISVELSIATGEVIAWKEGNQGEEFPQTSER 493

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  T++ +  G   V+ GL  +   +    IP+L  IP+LG  F++     + TE+ +  
Sbjct: 494 EVVTSIRVRDGEPFVVGGLFNERHTENTTKIPILGDIPLLGEFFKSKSKTDDRTEVVMVV 553

Query: 415 TPFLVK----PVAMRDL 427
            P+++     P+   DL
Sbjct: 554 IPYILNVTDGPIERWDL 570


>gi|297570248|ref|YP_003691592.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926163|gb|ADH86973.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 532

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 103/254 (40%), Gaps = 16/254 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-S 240
           ++ ++ L      Q++++  I EV  D   + G       S    +       G  +   
Sbjct: 279 EEYLDNLKSRLFRQISIEAKIVEVNLDEQHKSGIDWRGVLSGKHLNFELFGPEGIIYPWD 338

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KT 297
             G    +  +    F+ +L A+E   A   LA P ++ ++GQ A  T G    Y     
Sbjct: 339 AAGGGVTQATIGPNPFQVLLDAIETQGAADVLANPKISVMNGQPALITVGETFRYISQVE 398

Query: 298 VSSSTG---ATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------A 345
            ++ TG   +TSVTT     G+ L   PT+     I L +    S     +         
Sbjct: 399 TTTDTGGGISTSVTTDTVMSGLGLAVLPTITDQNEIVLSLTPVTSSLTQPMQERTFQGMT 458

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P   +R+ ++ V++  G T+++ GL+ +        +P+L  IPILG LF +     
Sbjct: 459 VQLPQINIRELNSVVKVRDGDTLMIGGLIDNVQDSTSHRVPILGNIPILGKLFSHETKTS 518

Query: 406 EETEIFIAATPFLV 419
            + E+ I   P ++
Sbjct: 519 RKRELVILLQPTII 532


>gi|531740|emb|CAA56979.1| xcpQ [Pseudomonas putida]
          Length = 591

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 103/267 (38%), Gaps = 26/267 (9%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ + ++  L+I    QV ++  IAEV     +++G Q        G         G   
Sbjct: 276 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 334

Query: 239 --------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                                + G    +      F+F  +++AL+  +    L+ PTL 
Sbjct: 335 ANIAGAAAGEDTEALGKLLSATAGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLL 394

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    AS   G +  + T S +        ++   + GV L   P +     + L I  
Sbjct: 395 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQ 454

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           EVS       A D+ +   R+  T V +   G ++L GL+ D++    + +PLL  IP L
Sbjct: 455 EVSSIADSSAASDVIT-NKREIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYL 513

Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421
           G LFR+      +  + +   P +++ 
Sbjct: 514 GRLFRSDASKNTKQNLMVFIRPRILRD 540


>gi|297539729|ref|YP_003675498.1| type IV pilus secretin PilQ [Methylotenera sp. 301]
 gi|297259076|gb|ADI30921.1| type IV pilus secretin PilQ [Methylotenera sp. 301]
          Length = 728

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 3/199 (1%)

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           +SS       ++      +    +S+            L A+E     + ++ P +T  +
Sbjct: 527 TSSDGLPDLMSNLAVANATGSIAYSIFSKAAGLVLNMELTAMESDGHGKIVSSPRVTTAN 586

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
              A   +G +  Y   SSS GA +V+     + L  TP +    +I + +  +     +
Sbjct: 587 QHKAKIAAGTEIPYLEASSS-GAATVSFKSAVLSLEVTPQITPDDKIIMELDVKKDR--V 643

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G     +PS   +  +T V + +G T VL G+ +  ++   E +P    +PI+G LF+  
Sbjct: 644 GQVFSGVPSIETQNINTQVLVGNGETAVLGGIFEQTVRNDVEKVPFFGDLPIMGNLFKKR 703

Query: 402 RFNREETEIFIAATPFLVK 420
               ++ E+ I  TP ++ 
Sbjct: 704 TTQNDKQELLIFITPRIMD 722


>gi|195952458|ref|YP_002120748.1| general secretion pathway protein D [Hydrogenobaculum sp. Y04AAS1]
 gi|195932070|gb|ACG56770.1| general secretion pathway protein D [Hydrogenobaculum sp. Y04AAS1]
          Length = 660

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 109/281 (38%), Gaps = 27/281 (9%)

Query: 178 NSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-- 233
            S  + + NL+    E   QV +  ++ E         G      G + G   + A+   
Sbjct: 366 KSQYENLKNLIKKLDEKRIQVLIAASVVEANLTKQLTTGVNWQALGKNGGIGFNPASLQT 425

Query: 234 -----FGGKFV-----SEGGDFSVKG-VLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                  G FV     S     +V G  +        L  LE+    + ++ P +  +  
Sbjct: 426 IYQGLLSGNFVVGVTSSSSISANVGGNTIIFPDLAVFLSLLEQGNGFKIISNPKVLTLDN 485

Query: 283 QSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           + A       + Y T +          +    D G+ L   PTV     I L I   + +
Sbjct: 486 EEAIIKEAQVYPYVTGTQYNINGFPILTYDYKDIGLELDVIPTVSKDN-IRLGINLNLQD 544

Query: 339 PVIGVNAG------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                N         +P    R  ++ V + SG T++L GL+ ++  +   GIP+L  IP
Sbjct: 545 ITGFTNTNVAGQTVPIPITTDRVLNSEVVVKSGQTVILGGLVSNNTIKNISGIPILQDIP 604

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
           +LG LF+      +++ +FI  TP+++K P  +  +++ ++
Sbjct: 605 VLGNLFKYQNRENKKSTLFIFITPYIIKSPDQLAKITKANE 645


>gi|94266027|ref|ZP_01289748.1| type II and III secretion system protein [delta proteobacterium
           MLMS-1]
 gi|93453422|gb|EAT03844.1| type II and III secretion system protein [delta proteobacterium
           MLMS-1]
          Length = 577

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 19/257 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ ++ L      QV ++  I EV      + G   +   S            G  +  +
Sbjct: 321 EEYLDNLQQQLFRQVIIEAKIIEVTLSDEHRSGIDWTNVLSGKQLDFELFGPDGIIYHPD 380

Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
               G    +  +    FE +L A+E       L+ P ++ ++GQ A    G    Y   
Sbjct: 381 RDQRGRGVSQISIGPNPFELLLEAIETQGETNVLSNPRISIMNGQPALINVGETVRYIAE 440

Query: 299 SSSTGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---- 347
           +SST      TH+        G+ +   P ++    I L +    ++   G    +    
Sbjct: 441 ASSTIQDQGVTHNIITGTVMSGLSMSVLPIIVDDNEIILSMTPMTTQLAPGPIPREKFGD 500

Query: 348 -----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                +P   +R+  T V + +G T+++ GL+ +      + +PLL  IP LG LFR+  
Sbjct: 501 NMLVQLPQINIREMQTMVRVANGDTLMIGGLIDEYETTESKRVPLLGDIPGLGKLFRHDT 560

Query: 403 FNREETEIFIAATPFLV 419
            ++E+ E+ I   P ++
Sbjct: 561 RSKEKKELVIMLRPRIL 577


>gi|94266705|ref|ZP_01290378.1| type II and III secretion system protein [delta proteobacterium
           MLMS-1]
 gi|93452646|gb|EAT03209.1| type II and III secretion system protein [delta proteobacterium
           MLMS-1]
          Length = 577

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 19/257 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ ++ L      QV ++  I EV      + G   +   S            G  +  +
Sbjct: 321 EEYLDNLQQQLFRQVIIEAKIIEVTLSDEHRSGIDWTNVLSGKQLDFELFGPDGIIYHPD 380

Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
               G    +  +    FE +L A+E       L+ P ++ ++GQ A    G    Y   
Sbjct: 381 RDQRGRGVSQISIGPNPFELLLDAIETQGETNVLSNPRISIMNGQPALINVGETVRYIAE 440

Query: 299 SSSTGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---- 347
           +SST      TH+        G+ +   P ++    I L +    ++   G    +    
Sbjct: 441 ASSTIQDQGVTHNIITGTVMSGLSMSVLPIIVDDNEIILSMTPMTTQLAPGPIPREKFGD 500

Query: 348 -----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                +P   +R+  T V + +G T+++ GL+ +      + +PLL  IP LG LFR+  
Sbjct: 501 NMLVQLPQINIREMQTMVRVANGDTLMIGGLIDEYETTESKRVPLLGDIPGLGKLFRHDT 560

Query: 403 FNREETEIFIAATPFLV 419
            ++E+ E+ I   P ++
Sbjct: 561 RSKEKKELVIMLRPRIL 577


>gi|294056469|ref|YP_003550127.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615802|gb|ADE55957.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 452

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 77/346 (22%), Positives = 138/346 (39%), Gaps = 23/346 (6%)

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           G   G  +  L      ++ +    I  D    E   +  I    I V+  +   VL   
Sbjct: 41  GLATGSLDEALQDDHAARLKDFQNQIAGDHDEFE---KDTIIYDCIYVQATTLRRVLEEF 97

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           + +      +VE  +  +S    N    +  K ++  L+     Q+ ++  I E+     
Sbjct: 98  ITSNGMVAASVESDQIIVSDRSSNI---ALLKSIIQRLDKPVP-QILVEARIVELNISSD 153

Query: 211 KQIGFQHSITGSSSGPSKSFAA---------DFGGKFVSEGGDFSVKGVL---DRFSFET 258
            +          ++ P     A         + GG   + G    +   +      SF  
Sbjct: 154 LEREVDLYYQNIATDPLTGQLAIVDEIGSKLNVGGATPNTGQGGILNSQVWDNGGESFNA 213

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVL 316
            +  LE +   + L+ P L    G+  S  +G +     +T SS    TS      G+ L
Sbjct: 214 FVRYLESSGKAKILSAPNLIIQRGKEGSIVTGEEVPILSQTTSSGGVTTSTEFKSVGIKL 273

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLL 374
              PT+++  R+ L +  EVS  +  + AG +  P   VR+A T +E+  G  I +AGLL
Sbjct: 274 SVKPTMIAGTRVRLEVNPEVSTVIDYIEAGGVSNPIIAVRQARTELEVNDGQLISMAGLL 333

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +   +  +   P+LS+IPILGALF++ R    +T++ I     +++
Sbjct: 334 QSTERDTERRTPILSQIPILGALFKSDREQSSQTQLIIFLNIKILE 379


>gi|325915066|ref|ZP_08177395.1| type II secretion system protein D [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538764|gb|EGD10431.1| type II secretion system protein D [Xanthomonas vesicatoria ATCC
           35937]
          Length = 680

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 119/294 (40%), Gaps = 43/294 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSFAA 232
            V+  L++   +QV ++  + E+     K++G Q  + G +          SG S     
Sbjct: 337 DVIRQLDVH-REQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVP 395

Query: 233 DFGGKFVSEGGDFSVKGVL-------------------------DRFSFETVLHALERAT 267
                  +  G+     VL                         +   F  ++ A++  T
Sbjct: 396 LAAAASGTRSGNDDDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDT 455

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTV 322
               L+ P++  +  + A    G +    T      ++     ++   D GV L   P +
Sbjct: 456 GSNLLSTPSIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQI 515

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            + G I L I+ EVS     V+A      +  R+ +T V + +G  + L GLL  + +Q 
Sbjct: 516 NTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQT 575

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY 434
            E +PLL  +P LGALFR+   NR++T + +   P +++  A  + ++ P  +Y
Sbjct: 576 VEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYNY 629


>gi|294627095|ref|ZP_06705683.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598528|gb|EFF42677.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 649

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 108/286 (37%), Gaps = 48/286 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224
           +++++ ++    DQV ++  I        + +G +  ITG++                  
Sbjct: 359 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNT 417

Query: 225 -----------GPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                      G S + A+              G   S     +   +   F+ +  L A
Sbjct: 418 SAQRANEIANTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSA 477

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-----ATSVTTHDYGVVLH 317
           ++       ++ P +   + +      G +  Y T+S           +V   +  + L 
Sbjct: 478 MQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGGGAAGSAAQANVQFKEVLLELK 537

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            TPT+ +  R+ L +  +  E    +     G +P    R+ +T V +  G T+V+ G+ 
Sbjct: 538 VTPTITNDNRVFLNMNVKKDEVARFIILEGYGTVPEINRREVNTAVLVGDGETVVIGGVY 597

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 598 EFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 643


>gi|78049053|ref|YP_365228.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037483|emb|CAJ25228.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 649

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 108/286 (37%), Gaps = 48/286 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224
           +++++ ++    DQV ++  I        + +G +  ITG++                  
Sbjct: 359 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNT 417

Query: 225 -----------GPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                      G S + A+              G   S     +   +   F+ +  L A
Sbjct: 418 SAQRANEIANTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSA 477

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-----ATSVTTHDYGVVLH 317
           ++       ++ P +   + +      G +  Y T+S           +V   +  + L 
Sbjct: 478 MQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGGGAAGSAAQANVQFKEVLLELK 537

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            TPT+ +  R+ L +  +  E    +     G +P    R+ +T V +  G T+V+ G+ 
Sbjct: 538 VTPTITNDNRVFLNMNVKKDEVARFIILEGYGTVPEINRREVNTAVLVGDGETVVIGGVY 597

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 598 EFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 643


>gi|91786687|ref|YP_547639.1| type II and III secretion system protein [Polaromonas sp. JS666]
 gi|91695912|gb|ABE42741.1| type II and III secretion system protein [Polaromonas sp. JS666]
          Length = 717

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 105/271 (38%), Gaps = 37/271 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---------------HSITGSSSGP 226
           + ++  L+I    QV ++  I E      K +G +                  T  +   
Sbjct: 444 QALIAKLDIP-VRQVLIEARIVEASDTFGKSLGVRLGGRPFTLNGNRNAMFGATYIAPDI 502

Query: 227 SKSFAADFGGKFVSEGGDF------------------SVKGVLDRFSFETVLHALERATA 268
           + +  A  G  F +  GDF                  S+            + A E    
Sbjct: 503 TATSGAVRGQNFGTTAGDFVQLPGVGQNGYPASTFAISLFNSSVTRLLNLEISAAEADGK 562

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + ++ P +       A    G +  Y+  +SS GATS+      + L  TP +   G I
Sbjct: 563 GKIVSSPRIVTADQVKALIEQGTELPYQQATSS-GATSIAFRKANLKLEVTPQITPEGNI 621

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L +  +V++  +G    +  +   +   T V + +GGT+V+ G+ + + ++ +  +PLL
Sbjct: 622 ILNV--DVNKDSVGRATANGFAIDTKHIQTQVLVENGGTVVIGGIFEQNDREDETKVPLL 679

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P +G LF+       ++E+ +  TP ++
Sbjct: 680 GDLPAIGNLFKTKTRTASKSELLVFITPKML 710


>gi|170698575|ref|ZP_02889644.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
 gi|170136509|gb|EDT04768.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
          Length = 783

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 86/437 (19%), Positives = 172/437 (39%), Gaps = 44/437 (10%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
           ++    P  +  ++ +   D +  +   +   LN+ +   V ++++DV +   +   ++ 
Sbjct: 158 AILSENPSHKVASSTLQQVDAQSTRATMVLPALNQSLQKPVTLELKDVDI--RSVLSILT 215

Query: 82  HSPRTMYLFGKNVGQANV--ILIGHDGKQMLNLDIL---------IERDIAHL----EMT 126
            +    ++  K++   ++   +   D   +  L+++         +  D   L       
Sbjct: 216 QTSGVSFVLDKDI-SPDLRATVYARDTSVIDALNLILQTSQLERKVLNDTTMLIYPSTEE 274

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV-- 184
            ++   D  +R   ++         + +QD  R +   ++              ++ V  
Sbjct: 275 KKKRYDDLVVRSYYLN-----SADPQKVQDMLRTIVAPKSMYVDGRLKMLVVRDTETVQD 329

Query: 185 -----MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGK 237
                +NL +IA  + V L V + EV    L  +G Q   S++    GP+    +   G 
Sbjct: 330 TIVRLLNLYDIASPE-VILDVEVLEVNSSDLLNLGIQFPDSVSARMVGPAGVAGSMTIGD 388

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                 D       D      VL+  + + + RTLA P +  ++ + AS   G +    T
Sbjct: 389 LKHLNRDSFPLSFPDPL---AVLNLRQTSGSTRTLANPRIRVVNHEKASVLIGDKVPVIT 445

Query: 298 VSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMP 349
            + +  +     SV   D G+ L   P +     + +++  EVS  V             
Sbjct: 446 STVNQTSNAITESVNYLDVGLKLEVEPEIHVDNDVTMKVALEVSNIVKEVRSSATGLLAY 505

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R A+T + L  G T  LAGL+K+D Q+    +P L +IP+LG LF N+R     +E
Sbjct: 506 QIGTRNANTVLRLHEGETQALAGLIKNDTQESGTHVPGLGRIPVLGRLFSNNRDTATRSE 565

Query: 410 IFIAATPFLVKPVAMRD 426
           I +  TP + + +AM +
Sbjct: 566 IVLLITPHIARSLAMPN 582


>gi|118475530|ref|YP_892173.1| type II and III secretion system protein [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414756|gb|ABK83176.1| type II and III secretion system protein [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 512

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 112/278 (40%), Gaps = 34/278 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------ITGSSSGP-- 226
             +N L    + QV + V+I  V        G   S              +TG+ S    
Sbjct: 222 DYLNQLENRLKKQVMIDVSIIAVELSNSYTKGIDWSKFELGFNSYLGNDPVTGAPSSIQF 281

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
               A +      +  G F + G ++  S + VL+ LE     + ++ P +  ++ Q A 
Sbjct: 282 GTGSAGNPAQSLRNITGGFVLGGGIN-LSMDGVLNFLETKGRTKVVSSPKIMTMNNQQAL 340

Query: 287 FTSGGQHLYKTVSSSTGA------TSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEV 336
            T G    Y+    +T        T+ T   Y    G++L+  P V   GRI LRI   +
Sbjct: 341 ITVGDNINYRVQEDTTNNNTQTAVTNTTYTQYSIFIGILLNLLPEVSDDGRIMLRINPSL 400

Query: 337 SEPVIGVNAGD-------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           S    G +           P    +K  T V++ SG TI+L GL+ +   +    +P+L 
Sbjct: 401 SSFKYGDDNRRQANIREIAPDTLQKKLSTVVQVNSGDTIILGGLIGETKGKDNTSVPVLG 460

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
            IP+ G LF++++ +   TE+    TP ++     + +
Sbjct: 461 DIPLFGNLFKSTKDSVSTTELIFIITPKVINNETPKQI 498


>gi|104783254|ref|YP_609752.1| type II secretion system protein D [Pseudomonas entomophila L48]
 gi|95112241|emb|CAK16968.1| putative type II secretion system protein D [Pseudomonas
           entomophila L48]
          Length = 651

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 99/267 (37%), Gaps = 26/267 (9%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ + ++  L+I    QV ++  IAEV     +++G Q        G         G   
Sbjct: 339 AAYRSIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 397

Query: 239 VSEGGDFSVKGVLDRFSF--------------------ETVLHALERATAIRTLAEPTLT 278
            S  G  S                                +++AL+  +    L+ PTL 
Sbjct: 398 ASIAGAASSGDNAKLGKLLSATTGATAGFGHFGGGFNFAMLVNALKGNSGFNLLSTPTLL 457

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    AS   G +  + T S +        ++   + GV L   P V     + L I  
Sbjct: 458 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQVNVDNSVRLDIVQ 517

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           EVS       A D+ +   R+  T V +   G ++L GL+ D+     + +PLL  IP L
Sbjct: 518 EVSSIAESRAASDVIT-NKREIKTKVMVEDNGLVILGGLISDERSTSNQRVPLLGDIPGL 576

Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421
           G LFR+      +  + +   P +++ 
Sbjct: 577 GRLFRSDASKGTKQNLMVFIRPRILRD 603


>gi|313892802|ref|ZP_07826383.1| bacterial type II and III secretion system protein [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442733|gb|EFR61144.1| bacterial type II and III secretion system protein [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 429

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 16/249 (6%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAA 232
           N   ++V NL+        QV L+ TI  + +   K+ GF+ S    TG     + S+ A
Sbjct: 190 NGEKRRVENLVRAIDKEPKQVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGDDKTNSYGA 249

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
              GK  S        G   +F  +  L  +E +     +A+P++ A++G++A    G +
Sbjct: 250 VTFGKTPS--------GEAYKFFVKPELSLMESSGKAVLIAKPSIMALNGETAHILIGER 301

Query: 293 HLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
                 S   G    S    + G+ L++TP + + G +  +I  EVS P++ V+      
Sbjct: 302 IPVVEESEVNGERKRSTRYEEVGIKLNYTPIITADGGVDAKIHAEVSTPIM-VSEMKAYK 360

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R+A T V L  G  +V+ GL+ +  Q   + +P+L  IP+LG LFR+SR  ++  E+
Sbjct: 361 ISTRQAHTRVRLQQGEVLVIGGLMDNRDQHQIQKVPILGDIPLLGKLFRHSRKTKDSIEM 420

Query: 411 FIAATPFLV 419
            +     +V
Sbjct: 421 LVLVRATVV 429


>gi|253701597|ref|YP_003022786.1| type II and III secretion system protein [Geobacter sp. M21]
 gi|251776447|gb|ACT19028.1| type II and III secretion system protein [Geobacter sp. M21]
          Length = 870

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 137/348 (39%), Gaps = 45/348 (12%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           VRT+   ++     E               ++K++   ++   + V L+V + E+ +   
Sbjct: 286 VRTMLQVKKIYVNEEANALVLRDKPEVIEVARKILEANDVPDAE-VLLEVEVFELSKQNA 344

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------------------GDFS 246
           +  G   S   +S G +   +   G  F+++                           F+
Sbjct: 345 ETFGLLLSRYATSMGVTGPGSTSGGSPFLADTLGAVTTTTTGTGTATTSAQPSNLLNVFN 404

Query: 247 VKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-- 303
           ++G     +      +  +  +   TL+ P +   + + A F  G +    T SS +G  
Sbjct: 405 LRGYNGYLTVPNATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRVPITTTSSPSGGG 464

Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKAD 357
            + +V   D GV ++  PT+     + +++  EVS       +    A  + +   R  D
Sbjct: 465 VSVNVQYVDVGVKVNAEPTIQLNNEVAIKLGLEVSSILNEKTIGTDQATTVVTIGTRNLD 524

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T + L  G T ++ GL++      K  + LL  IPI+G LF N+   +++TE+ +A TP 
Sbjct: 525 TVLSLKDGETSIIGGLIQKTQTDSKNKVFLLGDIPIIGPLFSNTSDKKDKTELLLAITPR 584

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
           +V+ V + D           +D  AF+  R ++    +  S     ++
Sbjct: 585 IVRGVTVPD-----------NDVAAFWSGREDEPSSHQPYSSFMEPDF 621


>gi|312879791|ref|ZP_07739591.1| general secretion pathway protein D [Aminomonas paucivorans DSM
           12260]
 gi|310783082|gb|EFQ23480.1| general secretion pathway protein D [Aminomonas paucivorans DSM
           12260]
          Length = 648

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 126/304 (41%), Gaps = 32/304 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GG 236
           ++ ++V+  L+I    QV L+  +AEV    L Q G   +  G        FA     G 
Sbjct: 340 AAIERVLEQLDI-QPKQVLLRGLVAEVNLTKLDQAGVDWAAWGGGLTGDGVFAGQVQMGN 398

Query: 237 KFVSE--------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
             +                      G   +      +      +  L R  AI  L+ P 
Sbjct: 399 SSIPPMFLEWFRDLTKHDTVTYDRFGNAITTTVYDSKALVYGYVKLLNRFDAINVLSMPR 458

Query: 277 LTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +       +S   G           +  + S   +S    D G++L  TP + S   + L
Sbjct: 459 IMCTDNLESSLQVGQVIPQLKGKLSEVNNPSAVQSSYEYKDTGLILKVTPHIRSGNLVAL 518

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            I+  + E V+  +  D P+   R+  T V + +G TI+L G++K+  + +K  +P LS 
Sbjct: 519 EIEQRIEE-VLTASTVDTPTTTKREIKTNVLVENGQTIILGGIIKEAEKSMKSRVPGLSY 577

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS-RPDDHYSVEDDAKAFFFNRV 448
           IP+LG LF ++   RE+ ++ I  TP++++ P    D+S +      V   A+A    R+
Sbjct: 578 IPLLGNLFTSTVKQREKVDLMIFLTPYILENPRQAVDVSVQISSGDQVPSAAEAETTLRL 637

Query: 449 NKIY 452
           +K++
Sbjct: 638 DKLF 641


>gi|254428336|ref|ZP_05042043.1| type IV pilus secretin PilQ subfamily, putative [Alcanivorax sp.
           DG881]
 gi|196194505|gb|EDX89464.1| type IV pilus secretin PilQ subfamily, putative [Alcanivorax sp.
           DG881]
          Length = 693

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 107/304 (35%), Gaps = 61/304 (20%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------- 226
            Q      +++++ L++    QV ++  +     D+  + G +    G ++         
Sbjct: 392 TQAKLEEIRELIDQLDVP-VQQVLIEARVVVATNDVTDEFGVRWGGLGFNAESMLQDQRT 450

Query: 227 -------------------SKSFAA---------DFG-------------------GKFV 239
                                +FAA         DFG                   G   
Sbjct: 451 YGVSGRLQSLRNLHQTNIDGAAFAASPAIDPDDVDFGPDDYLFEDIENDDDLIVDLGVDS 510

Query: 240 SEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           +    F+V    L     E  L ALE       +A P +     Q A   SG Q  ++  
Sbjct: 511 ANASRFAVGFTSLASGLIELELSALEAEGHGELVATPKVLTADQQPAVIASGQQVPFEVA 570

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           +SS GATS+   +  + L  TP +   G I + ++          ++    +    + +T
Sbjct: 571 TSS-GATSIDFVEAELRLEVTPHITPDGNIIMTLKVNND----SFSSDGSAAINTNRVET 625

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +V +  G T+VL G+ + +        P L  +P +G LFR +     + E+ I  TP L
Sbjct: 626 SVLVNDGETVVLGGIFQQEKINSVTKTPFLGDLPWIGNLFRKTVNRDNKQELLIFITPRL 685

Query: 419 VKPV 422
           +K  
Sbjct: 686 MKDA 689


>gi|115351491|ref|YP_773330.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
 gi|115281479|gb|ABI86996.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
          Length = 812

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 124/312 (39%), Gaps = 30/312 (9%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            D   +   LR+ I   ++ V+   + VV+     TIQ ++R V                
Sbjct: 273 ADAKSVMAALRQMIKPKDVYVDERVNAVVMRDTPETIQVAERVVMG-------------- 318

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                     L+I  + +VTL V + EV  +    +G Q+      +             
Sbjct: 319 ----------LDIP-QSEVTLDVQVLEVNMNDSLDLGVQYPGKIQFNALGGVEGGALTLG 367

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            +       V    +       +  L++    +TLA P +   + + A+   G +    T
Sbjct: 368 DLLRLNRDRVGVSSESGGLALAIDLLQKQGKTKTLANPKIRVRNMEKANIKIGERVPIVT 427

Query: 298 VSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
            +++ G  +  V+  D G++L   P +     + +++  EVS  +            S  
Sbjct: 428 TTNANGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILTKETTKTGLVAYSLG 487

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A+T +   +G T +LAGL+K +      G+P +S +P+LG LF ++  + E +EI +
Sbjct: 488 TRNAETLMTAKNGETQILAGLVKRNESDSVAGLPGVSGLPVLGRLFGSNGRSNERSEIVL 547

Query: 413 AATPFLVKPVAM 424
             TP + + + +
Sbjct: 548 LITPHIERNLDL 559


>gi|312143742|ref|YP_003995188.1| type II and III secretion system protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904393|gb|ADQ14834.1| type II and III secretion system protein [Halanaerobium sp.
           'sapolanicus']
          Length = 431

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 19/231 (8%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             + QV +K  I E+ R+ +K++G              SF  D  G              
Sbjct: 171 RPQKQVLIKARIEEISRNKVKELGIN-----PDQLSELSFIKDDSGSIEKI--------- 216

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVT 308
             R ++   L  LE   A   LA P+L  +  Q A    G Q   K   V      +S++
Sbjct: 217 --RVNWPDTLKILEEEGASNILANPSLMTLDRQKAKLVIGDQIPVKLERVEGDNIVSSLS 274

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             + G+VL F P +++  +I L I+  V+  +  V +  +P+   R A+TTV L +   +
Sbjct: 275 YIEAGIVLEFLPKIINDNQILLEIKPSVNS-IGQVVSDGLPAVNSRSAETTVILENEQVL 333

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + GL+K+D  +    IP  S++P+ G LF++ +     +E+ I  +P ++
Sbjct: 334 AIGGLIKEDEIKSLSKIPFFSELPLFGNLFKSEKSTVMNSELMIFISPEII 384


>gi|284097759|ref|ZP_06385757.1| Type II secretory pathway, component PulD [Candidatus Poribacteria
           sp. WGA-A3]
 gi|283830734|gb|EFC34846.1| Type II secretory pathway, component PulD [Candidatus Poribacteria
           sp. WGA-A3]
          Length = 406

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 111/289 (38%), Gaps = 35/289 (12%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L G ++     +R  E++   +               V N L      QV ++  I E+ 
Sbjct: 136 LSGTIQVTDLHRRVEEVATFLV--------------NVRNSL----YRQVEIQARIYEIA 177

Query: 207 RDILKQIGFQHSI----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                 +G   S     T   S    +      G F+S     +     +   FE V+ A
Sbjct: 178 LRDEYSLGVDWSRIALRTPKGSFKLANIITAPAGGFLSRAATAAFS--FNDGDFEGVIQA 235

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGV 314
           L+    ++ +++P +  ++ Q A    G    + T +++ G           V T   G+
Sbjct: 236 LQEQGDVQVVSQPRILTLNNQPALIKVGTDQSFFTSTTTQGTAGAGNIVTEQVRTVTSGL 295

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLA 371
           VL  TP +   G I + +   ++     V   N    P   V+++   V +  G  +++ 
Sbjct: 296 VLSVTPQISRDGWIMMDVSPIITRLTDTVESRNGSTAPVLEVKQSGGLVRIRDGQLVMIG 355

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           GL+++ +   +  +P L  +P+LG+ F  +      TE+ I   P +++
Sbjct: 356 GLIQEQLTNTERAVPFLGDLPVLGSFFSGTYQAERNTELVIFLMPRILR 404


>gi|329848228|ref|ZP_08263256.1| general secretion pathway protein D [Asticcacaulis biprosthecum
           C19]
 gi|328843291|gb|EGF92860.1| general secretion pathway protein D [Asticcacaulis biprosthecum
           C19]
          Length = 617

 Score =  166 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 119/320 (37%), Gaps = 14/320 (4%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS---GRNQYANSSSKKVMNLLNIAGE 193
                 +     G     + + + V +     + +      +      ++V++ ++    
Sbjct: 294 SATSTGEAAAPAGTSSAPESNSQGVRIVADKATNTVIINAPEATRVRLQEVLSEID-REP 352

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV ++ +I EV        G       S+   S S  +     F      FS+  + + 
Sbjct: 353 AQVFIEASIVEVTLTKDLSYGVDWEAIASNGDLSVSHFSTRSTGFGQIAPGFSINYLGN- 411

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------S 306
                 + AL   + +R ++ P +  +    A    G Q    T ++ +          S
Sbjct: 412 -DISAAVTALSSQSKVRIVSAPKVATVENMPAVLQVGDQVPVVTQTAQSVVNGDAPVVNS 470

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSG 365
           V   D GV+L  TP +    RI L +  EVS       +G D P+   RK D+++ +P G
Sbjct: 471 VDYRDTGVMLKVTPRITGTNRILLEVSQEVSSVARTQTSGIDSPTINQRKLDSSLIVPEG 530

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             + L GL+     Q   GIP L  IP++G +F+    NR  TE+ +     +++  +  
Sbjct: 531 TVVALGGLISSSDSQSDSGIPGLKDIPLIGGVFKGQSHNRNRTELIVLLKARILRSPSDY 590

Query: 426 DLSRPDDHYSVEDDAKAFFF 445
           D         + +  +  F 
Sbjct: 591 DAMTASLGADLRELIQEGFL 610


>gi|291286288|ref|YP_003503104.1| type II and III secretion system protein [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883448|gb|ADD67148.1| type II and III secretion system protein [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 509

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 102/262 (38%), Gaps = 23/262 (8%)

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
           +  +S  + V+  LN     QV ++  + EV  +     G     T        S   D 
Sbjct: 252 KIVSSYMEDVIRELN----KQVLIEAKLVEVTLNDTSAYGINWRGTADGKSIGLSLGTDG 307

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           G   +   G  +  G +  F +      +     + ++  P +  ++GQSA  TSG    
Sbjct: 308 GAAVLP--GGLTAVGAISSFDYSDWFAFMAAYGRVESVGNPRIRVMNGQSAMITSGQLKP 365

Query: 295 YKTVSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIGLRI---------QTEVS 337
           +  +   T   +              G++L  TP V   G I L I           E  
Sbjct: 366 FWEMERETDDDTDDVTVTYTRVTVLDGIMLGVTPHVKEDGTITLNIVPVFSDVEETPEQQ 425

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
               GV     P+  +++A T + L SG T+V+ GL+ +   + +  +PLL  +P LG L
Sbjct: 426 LDENGVVVASYPNINLKEAGTVLNLESGSTVVMGGLISNVETEDETKVPLLGDVPFLGYL 485

Query: 398 FRNSRFNREETEIFIAATPFLV 419
           F++     ++ E+ I  T  ++
Sbjct: 486 FKSKYKYTQKRELVIFLTATII 507


>gi|269214941|ref|ZP_06158925.1| type IV pilus secretin PilQ [Neisseria lactamica ATCC 23970]
 gi|269208722|gb|EEZ75177.1| type IV pilus secretin PilQ [Neisseria lactamica ATCC 23970]
          Length = 254

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 22/246 (8%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------------ 244
            ++  I E      + +G +   TG         A  +G     EGGD            
Sbjct: 1   MIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFEGGDGKWSAQTSINLP 60

Query: 245 -------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK- 296
                   S+   +   +    L A E  +  +TLA P +   + + A   SG +  Y+ 
Sbjct: 61  VAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGTEIPYQD 120

Query: 297 -TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVR 354
            + S S+ +T+ T     + L  TP +   G+I + ++     PV   V        + +
Sbjct: 121 TSSSGSSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPVDCTVKDETTKCIQTK 180

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             +T   + +GGT+++ G+ +++       +PLL  IP++G LF+    +    E+ I  
Sbjct: 181 NLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFKTRGKSTNRRELLIFI 240

Query: 415 TPFLVK 420
           TP ++ 
Sbjct: 241 TPRIMD 246


>gi|315637872|ref|ZP_07893062.1| general secretory pathway protein D [Campylobacter upsaliensis
           JV21]
 gi|315482113|gb|EFU72727.1| general secretory pathway protein D [Campylobacter upsaliensis
           JV21]
          Length = 468

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 103/269 (38%), Gaps = 17/269 (6%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           + +  L    + QV + V+I  V  +     G            +     +   +  S  
Sbjct: 198 EYITKLENRLKKQVIIDVSIIAVNLNENHSSGINWQNFNLDFASTTQNGQNSFIQLQSGQ 257

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G     G+    +F +VL+ L +    + L+ P L A++ Q A  + G    Y+   SS 
Sbjct: 258 GFVKNLGLRANINFNSVLNFLSQNGKTQVLSSPKLMALNNQQAIISVGDTINYQVKESSK 317

Query: 303 GATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------ 347
           G  + TT            G++L   P +    +I LRI   +S+     +         
Sbjct: 318 GTENGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPRT 377

Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P    +K  T V + +  T++L GL+  +  +    +  LSKIP+LG LF     +  
Sbjct: 378 IAPDTIQKKLSTVVSMENNQTLILGGLISHNQIKEASEVNFLSKIPLLGLLFSGDETSSN 437

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
            TEI    TP +V    M  LS  D  + 
Sbjct: 438 STEIVFIITPSIV-DKQMGILSLKDLGFR 465


>gi|121999034|ref|YP_001003821.1| type II and III secretion system protein [Halorhodospira halophila
           SL1]
 gi|121590439|gb|ABM63019.1| type II and III secretion system protein [Halorhodospira halophila
           SL1]
          Length = 372

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 129/307 (42%), Gaps = 20/307 (6%)

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
           R +   +     +++ +     V +        E + T + Q    +   +  ++++  L
Sbjct: 44  RTLPLVHAEAAQLAELLRDETGVLSESGHASVDERTNTLILQDTPARLEEA--EQLVREL 101

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----------- 237
           + A   QV ++  I     +  +++G +  ++        +F +  G             
Sbjct: 102 DRAN-RQVMIEARIVLASGEYSRELGSRLGLSSERGDGHFAFDSLPGSNDAAVGDGLLAE 160

Query: 238 --FVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
              V EG   SV  G +     +  L A+E     R ++ P +     Q+A    G Q  
Sbjct: 161 LPPVGEGARLSVSVGEVGERLLQLELSAMEAEGHGRVVSSPRVLTTERQAARIEQGVQIP 220

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           Y+  ++ +GAT+V   D  + L  TP V     + L ++  V++  +G     +PS   +
Sbjct: 221 YQE-TAESGATAVAFQDAALSLTATPQVTEDDAVSLALR--VTKDAVGQIYEGVPSIDTQ 277

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T + + +G TIVL G+ + + ++ ++ +P L ++P++G LFR     +   E+ +  
Sbjct: 278 AVTTHLRVQAGETIVLGGVREHEQRKQRQRVPWLGELPLIGWLFRQRMSEQSHHELLVFV 337

Query: 415 TPFLVKP 421
           TP LV+ 
Sbjct: 338 TPRLVED 344


>gi|162146314|ref|YP_001600773.1| general secretion pathway protein D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209543683|ref|YP_002275912.1| general secretion pathway protein D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161784889|emb|CAP54432.1| putative general secretion pathway protein D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531360|gb|ACI51297.1| general secretion pathway protein D [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 772

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 74/325 (22%), Positives = 119/325 (36%), Gaps = 17/325 (5%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDI 209
            + +   +A+ +       +      +  S  V  +L        QV +   IAEV+ + 
Sbjct: 438 ASAEGRPQAMRIISNSQHNAILVYGTDQESDTVEQMLRRIDVMPLQVRIDAVIAEVQLND 497

Query: 210 LKQIGFQH-----SITGSSSGPSKSFAAD-FGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
             Q G Q       I G  S  S++           S      + G          + AL
Sbjct: 498 ALQYGTQFFFKSGGINGVLSTNSQTITTGTLATAAFSHTLPGFIIGGASGGGAPFAIDAL 557

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHF 318
           +  T +  L+ P L     ++A    G     +  S S+          T    GV++  
Sbjct: 558 QNVTTVHVLSSPQLMVQDNRAARLQVGQLVPVQIGSQSSTIGTSIYNQFTYQPTGVIMQV 617

Query: 319 TPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TP V   G + L +  EVS          NA   P++  R   + V +  G T+ LAGL+
Sbjct: 618 TPHVSEGGLVTLDVSQEVSSVSPTAASTANAASNPTFNDRSVSSRVVVQDGQTVGLAGLI 677

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            D   ++  GIP L  IP+LG L  N   NR+ TE+ I  TP ++           D   
Sbjct: 678 TDSSSRINSGIPWLKNIPVLGVLAGNQNNNRQRTELLILMTPHVIHDQRDAVDLMEDLRD 737

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASE 459
           +  + A      RV ++ G  +  +
Sbjct: 738 THPNAANVPDELRVMRMTGSADPQQ 762


>gi|325922191|ref|ZP_08183978.1| type II secretory pathway protein D [Xanthomonas gardneri ATCC
           19865]
 gi|325547310|gb|EGD18377.1| type II secretory pathway protein D [Xanthomonas gardneri ATCC
           19865]
          Length = 674

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 126/326 (38%), Gaps = 47/326 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSFAA 232
            V+  L++   +QV ++  + E+     K++G Q  + G +          SG S     
Sbjct: 324 DVIRQLDVH-REQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVP 382

Query: 233 DFGGKFVSEGGDFSVKGVL-------------------------DRFSFETVLHALERAT 267
                  +   +     VL                         +   F  ++ A++  T
Sbjct: 383 LAAAAAGTRSNNGEEDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDT 442

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTV 322
               L+ P++  +  + A    G +    T      A      ++   D GV L   P +
Sbjct: 443 GSNLLSTPSIMTLDNEQARILVGQEVPITTGEVLGTANVNPFRTIQRQDVGVQLEVRPQI 502

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            + G I L I+ EVS     V+A      +  R+ +T V + +G  + L GLL  + +Q 
Sbjct: 503 NTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQT 562

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY----SV 436
            E +PLL  +P LGALFR+   NR++T + +   P +++  A  + ++ P  +Y     +
Sbjct: 563 VEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYNYLRDRQL 622

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEG 462
            D       + + + Y   +  ++  
Sbjct: 623 ADGDPEAALDALVRDYLRAQPPQLPA 648


>gi|332994893|gb|AEF04948.1| pilus (MSHA type) biogenesis protein MshL [Alteromonas sp. SN2]
          Length = 557

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 23/250 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKG 249
             QV L+  I EV  +   Q G   +   +++G    S S  A   G  +S         
Sbjct: 285 TKQVILEARILEVELNDGYQQGINWNEILANTGNTDFSLSTTAGTLGNDISATLGGVTSL 344

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------- 301
                 F  VL  L     ++ L+ P +TAI+ Q A    G    + T  SS        
Sbjct: 345 AFLNKDFSGVLSLLSTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSDSTVTSTT 404

Query: 302 ---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MP 349
              +    +T    G+ L  TP +   G + L +   V E                  + 
Sbjct: 405 TSISPDIELTPFFSGIALDVTPQIDDKGTVLLHVHPSVIETAEQQKVVTMDDEQIVLPLA 464

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R++DT +   SG  +V+ GL++     +    PLL  IP+ G LF+N + +  + E
Sbjct: 465 QSTIRESDTIIRAGSGEIVVIGGLMQTSQTDVVSKTPLLGDIPLFGELFKNRQVSETKKE 524

Query: 410 IFIAATPFLV 419
           + I   P +V
Sbjct: 525 LIILLKPTVV 534


>gi|120553686|ref|YP_958037.1| pilus (MSHA type) biogenesis protein MshL [Marinobacter aquaeolei
           VT8]
 gi|120323535|gb|ABM17850.1| pilus (MSHA type) biogenesis protein MshL [Marinobacter aquaeolei
           VT8]
          Length = 572

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 108/263 (41%), Gaps = 28/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----K 237
           +  +    +  + QV L+  I EV  +   Q G   +   SS+G +  F +   G    +
Sbjct: 273 ENYLRKTELIMQRQVVLEAKILEVGLNEGYQQGIDWNDVQSSAGRADYFTSQSLGGQQIR 332

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
               GG FS    +    F  ++  L +   ++ L+ P ++ ++ Q A    G    + T
Sbjct: 333 TPDIGGLFSAT--VSAGDFTGLIELLGQQGNVQILSSPRISTVNNQKAVIKVGTDEFFVT 390

Query: 298 -------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----- 339
                          S++ +  +T    G+ L  TP +   G I L +   VSE      
Sbjct: 391 DIDFDDNNSAVTATDSTSTSVELTPFFSGISLDVTPQIAEDGAITLHVHPSVSEVADQEK 450

Query: 340 --VIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
              IG     +P     VR+ D+ +   SG  +V+ GL+++  +     +P  S+IP+LG
Sbjct: 451 VITIGERDVTLPLARSTVRETDSVIRAESGQIVVIGGLIQNSSEDNNSAVPFFSEIPLLG 510

Query: 396 ALFRNSRFNREETEIFIAATPFL 418
            LF+   F   ++E+ I   P +
Sbjct: 511 ELFKQRNFESRKSELVILLRPVV 533


>gi|315500691|ref|YP_004089492.1| type II and III secretion system protein [Asticcacaulis excentricus
           CB 48]
 gi|315418703|gb|ADU15341.1| type II and III secretion system protein [Asticcacaulis excentricus
           CB 48]
          Length = 626

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 120/294 (40%), Gaps = 13/294 (4%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
               + R V   ET        +      + V+N ++     QVT++ +I EV  +    
Sbjct: 328 NTDSNIRIVADKETNTVIVSAPEAERVRIQSVLNEVD-REPAQVTIEASIVEVTLNNEFS 386

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
            G        +   S S           +   FSV  +  R   +  L+AL   + +R +
Sbjct: 387 FGVDWQTI--NGALSLSNYTTDSTSLAPQAPGFSVNYL--RSDIKAALNALSSKSKVRIV 442

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSP 325
           + P +TA    +AS   G Q      +S +         +++   D GV L  TP VL+ 
Sbjct: 443 SAPKMTARENATASLQIGDQVPIVKQNSQSTNGGNAPIVSTIDYRDTGVTLKVTPRVLND 502

Query: 326 GRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            R+ + +  EVS       +G D P+ + RK ++++ +P G  + L GL+       + G
Sbjct: 503 NRVAMDVTQEVSSVARTQTSGIDSPTIKQRKLESSLIIPEGTVVALGGLISSSESDSEGG 562

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
            PLL  IP LG LF+    N++ TE+ +     +++  A  +    D    + D
Sbjct: 563 APLLKDIPGLGNLFKQRARNKDRTELIVLIQVTILRDPAAFNRQWEDFGADIRD 616


>gi|166713254|ref|ZP_02244461.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 648

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 111/286 (38%), Gaps = 48/286 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------------- 222
           +++++ ++    DQV ++  I        + +G +  I G+                   
Sbjct: 358 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYQNT 416

Query: 223 ---------SSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261
                    + G S +  A              GG   +  G  +   +   F+ +  L 
Sbjct: 417 SAQRASEIANGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELS 476

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLH 317
           A+++      ++ P +   + +      G +  Y T+S S        +V   +  + L 
Sbjct: 477 AMQQEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELK 536

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            TPT+ +  R+ L +  +  E    ++    G +P    R+ +T V +  G T+V+ G+ 
Sbjct: 537 VTPTITNDNRVFLSMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVY 596

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 597 EFTDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642


>gi|317052313|ref|YP_004113429.1| type II and III secretion system protein [Desulfurispirillum
           indicum S5]
 gi|316947397|gb|ADU66873.1| type II and III secretion system protein [Desulfurispirillum
           indicum S5]
          Length = 683

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 23/286 (8%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
           N  A    +  ++++    + QV + V I ++       +G  +S     SG     A +
Sbjct: 208 NASAMRRIEAYLDMVRRLYDQQVEISVRILQISLSDSLTMGVDYSALFRVSGSDTPIAFN 267

Query: 234 FGGKFVSEGGDFS-----------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
             G     G                 GVL+   F   L  L     + TL+ PT+T ++ 
Sbjct: 268 LHGTEGQAGASLDGTAGERGVLDYTVGVLNPGKFAGFLQFLSLHGTVHTLSNPTITTLNN 327

Query: 283 QSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            + +  S   + Y+  ++ + A      T       GV L  TP +++ G I L +   V
Sbjct: 328 VTGNVYSIRTYPYQVTTTESSANVREARTYFEDVKIGVSLTVTPNIVNNGDILLEVLPVV 387

Query: 337 SEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            E             + P    +   T +   +  +  + GL+ +   +   GIP+LS+I
Sbjct: 388 GEIYEENFNPASGEREKPQTVEQAIRTILRTRNNHSYFIGGLIYEKNVESTSGIPVLSRI 447

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
           P+LG LFR+ R  +   E+ I  TP ++ P      + P D++S  
Sbjct: 448 PVLGRLFRSDRRVQSRQELVIVLTPKII-PSLDSHSAGPVDYHSTP 492


>gi|171463462|ref|YP_001797575.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193000|gb|ACB43961.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 509

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 101/251 (40%), Gaps = 18/251 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE- 241
           K+++ L+I    +V ++  I E   D   ++G +     ++   + +      G  V + 
Sbjct: 262 KLISKLDIRT-QEVLIEAFIVEADDDWQYELGSRFGYRNTTGNGTSTNPTSAVGGAVGDL 320

Query: 242 -----------GGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                      G  F +  +        +  L A+E+ + ++ ++ P +  +  + A   
Sbjct: 321 ANANIFSRPVTGAPFGLGYLFQTTASQLKVELTAMEKLSLVKIISNPHVFTMDNEEAVVI 380

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
            G Q  Y      T   +    D  + L  TP+++  G + L +      P    +    
Sbjct: 381 DGVQIPYPVPGVGTNQITYEFKDAALKLTATPSIVGDGNLFLNMIVNKDSPNYSTSP--- 437

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS   R+  + + +  G   V+ G+     +   E +PLL  IP+LG+LF  +R   ++T
Sbjct: 438 PSINKREVRSKLLIQDGTIAVIGGIYDQTKENTVEKVPLLGSIPLLGSLFSYTRKADKKT 497

Query: 409 EIFIAATPFLV 419
           ++ +   P ++
Sbjct: 498 QLLVFIAPKIL 508


>gi|188990167|ref|YP_001902177.1| exported type II protein secretion system protein D [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167731927|emb|CAP50113.1| exported type II protein secretion system protein D [Xanthomonas
           campestris pv. campestris]
          Length = 690

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 119/294 (40%), Gaps = 43/294 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKS 229
            V+  L++   +QV ++  + E+     K++G Q  + G +                   
Sbjct: 346 DVIRQLDVH-REQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLLATQYSGAAPGIVP 404

Query: 230 FAADFGGKFVSEGGDFSV----------------------KGVLDRFSFETVLHALERAT 267
            AA   G   + G D SV                       G  +   F  ++ A++  T
Sbjct: 405 LAAAAAGTRSNNGEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDT 464

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTV 322
               L+ P++  +  + A    G +    T      ++     ++   D GV L   P +
Sbjct: 465 GSNLLSTPSIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQI 524

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            + G I L I+ EVS     V+       +  R+ +T V + +G  + L GLL  + +Q 
Sbjct: 525 NTAGGITLAIKQEVSAIAGPVSTQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQT 584

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY 434
            E +PLL  +P LGALFR+   NR++T + +   P +++  A  + ++ P  +Y
Sbjct: 585 VEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYNY 638


>gi|149923951|ref|ZP_01912337.1| type IV pilus secretin PilQ [Plesiocystis pacifica SIR-1]
 gi|149815183|gb|EDM74732.1| type IV pilus secretin PilQ [Plesiocystis pacifica SIR-1]
          Length = 1125

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 98/267 (36%), Gaps = 42/267 (15%)

Query: 193  EDQVTLKVTIAEVRRDILKQIGFQHSI-------TGSSSG-------------------- 225
              QV ++  I E R + L+Q+G Q          TG+ +G                    
Sbjct: 853  TPQVLIEARIVEARTNWLRQLGIQWGFDFVASPGTGNPTGLLFPNAIGIGGGSGSNQSPV 912

Query: 226  ---------PSKSFAADFGGKFVSEGGD---FSVKGVLDRFSFETVLHALERATAIRTLA 273
                      + ++A D      +  G    FS   +    +    L A E    +R ++
Sbjct: 913  NGLILPGAAANPNYAVDLPAVVGTGSGGALGFSFGSLSGNLNTNLRLSAAENEGDVRIIS 972

Query: 274  EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
             P +  +    A    G Q     VS+     +    +  + L  TP V + G + L ++
Sbjct: 973  APKIVTLDNTEAQIEQGVQIPIAQVSAQ--GVNTRYVNATLGLRVTPQVTNEGAVLLEVE 1030

Query: 334  TEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             + +E   +   A   P+   + A + + +  G T V+ G+   +       +P  + IP
Sbjct: 1031 VQKNEADFVNTGARGDPTILTKSARSQLLITDGDTAVIGGIYTRNQAINHSKVPWFADIP 1090

Query: 393  ILGALFRNSRFNREETEIFIAATPFLV 419
            I+G  F+N     + +E+ I  TP +V
Sbjct: 1091 IIGWFFKNRTERDDRSEMLIFLTPRIV 1117


>gi|21232854|ref|NP_638771.1| type II secretion system protein D [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767075|ref|YP_241837.1| type II secretion system protein D [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114682|gb|AAM42695.1| type II secretion system protein D [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572407|gb|AAY47817.1| type II secretion system protein D [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 690

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 119/294 (40%), Gaps = 43/294 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKS 229
            V+  L++   +QV ++  + E+     K++G Q  + G +                   
Sbjct: 346 DVIRQLDVH-REQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLLATQYSGAAPGIVP 404

Query: 230 FAADFGGKFVSEGGDFSV----------------------KGVLDRFSFETVLHALERAT 267
            AA   G   + G D SV                       G  +   F  ++ A++  T
Sbjct: 405 LAAAAAGTRSNNGEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDT 464

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTV 322
               L+ P++  +  + A    G +    T      ++     ++   D GV L   P +
Sbjct: 465 GSNLLSTPSIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQI 524

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            + G I L I+ EVS     V+       +  R+ +T V + +G  + L GLL  + +Q 
Sbjct: 525 NTAGGITLAIKQEVSAIAGPVSTQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQT 584

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY 434
            E +PLL  +P LGALFR+   NR++T + +   P +++  A  + ++ P  +Y
Sbjct: 585 VEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYNY 638


>gi|87200666|ref|YP_497923.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136347|gb|ABD27089.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 748

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/315 (20%), Positives = 122/315 (38%), Gaps = 55/315 (17%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFAADFG 235
           +++  L++  ++QV ++  I E+  D+ K++G Q    G       ++   S     D  
Sbjct: 377 ELIRQLDLP-QEQVLVEAIIVEISNDVAKELGVQMLFGGKNMPFAVTNYSNSSPNIIDIA 435

Query: 236 GKFVSEGGD-------------------------------FSVKGVLDRFS--------F 256
           G  +++  +                                S +G    F          
Sbjct: 436 GGLLADNLNQTTTVVNGDTVTTTTNSTAGDLLRENAASKLLSARGAYTGFLTELSKDTYL 495

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTH 310
             +++A++       L+ P +T  +   AS   G +    T  + +G        ++   
Sbjct: 496 GAIINAVQTDKNSNILSTPHITTNNNVPASILFGQEIPVSTGEALSGGNFSDTFRTIQRQ 555

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIV 369
           + G+ L  TP + +   I L ++ EVS     V+          R+  TTV +     + 
Sbjct: 556 NVGIELDVTPQINASNMIRLDLRQEVSSIAGTVSKTSNELIVNKREIKTTVTVGDREIVA 615

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GLL D+ Q+  + +PLL  IPILG  F++   +R +T + +   P +++  A R  + 
Sbjct: 616 LGGLLDDNEQRTLQKVPLLGDIPILGEAFKSRARSRVKTNLMVFIRPTILRNAADRQ-AL 674

Query: 430 PDDHYSVEDDAKAFF 444
               Y V  DA+  F
Sbjct: 675 AARRYGVVRDAQVKF 689


>gi|317487416|ref|ZP_07946204.1| type IV pilus secretin PilQ [Bilophila wadsworthia 3_1_6]
 gi|316921348|gb|EFV42646.1| type IV pilus secretin PilQ [Bilophila wadsworthia 3_1_6]
          Length = 541

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 135/363 (37%), Gaps = 70/363 (19%)

Query: 101 LIGHDGKQMLNLDILIE-RDIAHLEMTLRRFI--------ADSNIRVEMVSDTVVLHGMV 151
           LI      +    + +   + A L+ +L +F+          + I V+  S+ +++    
Sbjct: 170 LISRQNSPLTVSVVSVRYAEAAALQQSLTKFLTAANGQGGQAAVIEVDEHSNALIIQ--- 226

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            T QD QR + L                     ++ L+     QV LK  I E  ++  +
Sbjct: 227 ATEQDQQRIIRL---------------------VDNLDRPRP-QVHLKAYIVEATKETAR 264

Query: 212 QIGFQHSITGSSSGPSKS----------------------------------FAADFGGK 237
           ++G Q      S   +                                    F  D+ G 
Sbjct: 265 ELGVQWGGVWRSGSFNNGNHAWIGSGASGTQGQDPVTGGLTGTHGSGLGGAPFGLDYSGI 324

Query: 238 FVSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             ++ G    + G +     E  L+ +E+   I  L+ P++T +  + A   +G +  Y 
Sbjct: 325 ASNDMGSLGFLFGKVGGSMLEVQLNLMEKDGNINILSSPSITTLDNKMAYTENGEKVPY- 383

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
             +S+ G   V   D  + L  TP V+    + L++  +  E     +    P    ++ 
Sbjct: 384 VSTSNMGDREVKFEDAVLRLEMTPNVIDGDNLKLKVLVKKDEVDTSRSVDGNPFIIKKQT 443

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +TT+ + +G T+V++GL K+    +  G+P L  IP    +F +    +   E+ I  TP
Sbjct: 444 ETTLIMRNGETVVISGLTKEKGTDINAGVPGLKDIPGGKYVFGHESKGKTMEEVLIFITP 503

Query: 417 FLV 419
            ++
Sbjct: 504 EIL 506


>gi|51243965|ref|YP_063849.1| type II protein secretion protein [Desulfotalea psychrophila LSv54]
 gi|50875002|emb|CAG34842.1| related to type II protein secretion protein [Desulfotalea
           psychrophila LSv54]
          Length = 559

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 108/304 (35%), Gaps = 36/304 (11%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI-------AGEDQVTLKVTIAE 204
           ++   ++R       ++          S+ + V++ L+            Q+ +   I E
Sbjct: 256 QSPTATRRYAAGGAMYIIDKPIGLITVSAPRNVLDRLDAYFFSLKKELYKQIAIDAKIIE 315

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGVLDRFSFETVLH 261
           V       IG   S      G       ++G    +    G  F     L+   F  ++ 
Sbjct: 316 VTLSDASSIGIDWSNVLGGDGFKLGGKVNYGDATDAIFHNGSGFLDTITLESTDFHVLIK 375

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------------VTT 309
           AL      + L+ P L+ ++GQ A  + G    Y +   +   TS              +
Sbjct: 376 ALNEQGDTKVLSNPKLSVMNGQPALISVGRSITYISEIEADRDTSSIGTSTITYTTETDS 435

Query: 310 HDYGVVLHFTPTVLSPGRIGLRI--------------QTEVSEPVIGVNAGDMPSYRVRK 355
              G+ L  T TVL    I + +              + E  +      +  +P   VR+
Sbjct: 436 LLSGLGLGITATVLDDSEIIMNLVPVTSELVPFKDGEEIEYRQVGDDGASVGLPVLNVRE 495

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             TTV +  G T+++ GL+ +        +P+L  IP L  LF     ++++ E+ I   
Sbjct: 496 MSTTVRVKDGETLIIGGLISESNSTTGSSVPILGSIPGLKYLFGYEGKSKQKKELVILIQ 555

Query: 416 PFLV 419
           P ++
Sbjct: 556 PRII 559


>gi|86149355|ref|ZP_01067586.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88596641|ref|ZP_01099878.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218563075|ref|YP_002344854.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|85840137|gb|EAQ57395.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88191482|gb|EAQ95454.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360781|emb|CAL35581.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|284926681|gb|ADC29033.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927422|gb|EFV06760.1| Pilus biogenesis protein MshL [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929011|gb|EFV08254.1| General secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 472

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 17/264 (6%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S K  +  L    + QV + V+I  V  +     G       +    S+    +   +F 
Sbjct: 201 SVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQ-NFNIGLNSQVNNENSFIQFQ 259

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   
Sbjct: 260 NGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 319

Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345
           SS G  + TT            G++L+  P +   G+I LRI   +S+     +      
Sbjct: 320 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE 379

Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    
Sbjct: 380 PRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVL 439

Query: 404 NREETEIFIAATPFLVKPVAMRDL 427
           N + TEI    TP +V  V    L
Sbjct: 440 NSKATEIVFIITPSIVDSVNAPSL 463


>gi|149189065|ref|ZP_01867353.1| MSHA biogenesis protein MshL [Vibrio shilonii AK1]
 gi|148837028|gb|EDL53977.1| MSHA biogenesis protein MshL [Vibrio shilonii AK1]
          Length = 538

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/279 (21%), Positives = 106/279 (37%), Gaps = 30/279 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ +++       QV L+  I EV      Q G   S  G++ G      +      V  
Sbjct: 253 REFLDMSQQRLHRQVILEAKILEVTLSDGYQQGISWSNIGAAIGSGGVSISRPAQNPVPP 312

Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                   GG  +V   +    FE VL  +     +  L+ P +TA + Q +    G   
Sbjct: 313 LNQIGTLLGGQTNVT--ITDGHFEAVLSFMATQGDLNVLSSPRITAANNQKSVIKVGTDE 370

Query: 294 LYKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            + T  S+               +T    G+ L  TP +   G + L +   V E     
Sbjct: 371 YFVTDISTVIGSGENANVAPQVELTPFFSGISLDVTPQIDEKGNVLLHVHPAVIEVQEEK 430

Query: 344 NAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
              ++             +R++D+ +    G  +V+ GL+K    ++   +P L  IP L
Sbjct: 431 KEIEVLGDSIIVPLAKSSIRESDSVIRAADGDVVVIGGLMKSATTEMVSKVPYLGDIPAL 490

Query: 395 GALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432
           G LFRN++   E+TE+ I   P +V      +++ R  D
Sbjct: 491 GHLFRNTQNVTEKTELVILLRPTVVGVNTWQKEVERSRD 529


>gi|294666182|ref|ZP_06731437.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604047|gb|EFF47443.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 668

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/282 (21%), Positives = 113/282 (40%), Gaps = 42/282 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSFAA 232
            V+  L++   +QV ++  + E+     K++G Q  + G +          SG S     
Sbjct: 324 DVIRQLDVH-REQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVP 382

Query: 233 DFGGKFVSEGGDFSVKGVL-------------------------DRFSFETVLHALERAT 267
                  +  G+     VL                         +   F  ++ A++  T
Sbjct: 383 LAAAAAGTRSGNAEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDT 442

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTV 322
               L+ P++  +  + A    G +    T      ++     ++   D GV L   P +
Sbjct: 443 GSNLLSTPSIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQI 502

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            + G I L I+ EVS     V+A      +  R+ +T V + +G  + L GLL  + +Q 
Sbjct: 503 NTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQT 562

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            E +PLL  +P LGALFR+   NR++T + +   P +++  A
Sbjct: 563 VEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 604


>gi|218294935|ref|ZP_03495789.1| type II and III secretion system protein [Thermus aquaticus
           Y51MC23]
 gi|218244843|gb|EED11367.1| type II and III secretion system protein [Thermus aquaticus
           Y51MC23]
          Length = 751

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 10/233 (4%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L+V I EV+ ++ + +G + +    + G   +   D G   +     F     L  
Sbjct: 527 PQVNLRVRIQEVQSNLTRSLGLKWNTI--AGGNVVASILDSGLSLI-----FDSTRSLAA 579

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +    L AL+R    R L +   T +S Q+A   SG   L + V  +         D G
Sbjct: 580 LNIVATLDALQRQGLSRALRDVNQTVLSNQTARLQSGETFLIRRVVENR--VERVPFDIG 637

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           +++  TP + + G+I L I+ EVS  V      GD+  +  +   TT+ +  G T+VL G
Sbjct: 638 IIVEVTPQITADGQILLNIRAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVRDGQTVVLGG 697

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           L   +  Q  +G+P+L  IP++G LF+       + E+ +  T  ++K  A R
Sbjct: 698 LTSQENTQTVQGVPILMDIPLIGELFKQRTGETTDRELLVVITADILKETAER 750


>gi|90424504|ref|YP_532874.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB18]
 gi|90106518|gb|ABD88555.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB18]
          Length = 774

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 26/253 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFVSEGGDFSVKGVL 251
           QV +  TIAEV      Q G Q  +T    G      S         +S   D  +   +
Sbjct: 489 QVAIDATIAEVTLTDDLQFGVQTYLTSRDFGMPADRGSLGTASSSALISAASDVVLNRAI 548

Query: 252 DRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---- 299
             F+F        + +L+AL   T ++ L+ P+L  I  Q A+   G +   +T S    
Sbjct: 549 PGFNFLVGSGSSPKAILNALHAITEVKVLSNPSLVVIDNQVATLQVGDEIPIQTGSATVL 608

Query: 300 --SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------M 348
             S+T A +      G++L   P + + G + L I+ E+S PV   +             
Sbjct: 609 SSSNTIANTTDYRRTGILLQVVPRINANGNVRLEIEQEISNPVASSSTSSSSSTSTNSLT 668

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+   RK  ++V + SG T++LAGL+ D   + + GIP L ++P +G +F  +    + T
Sbjct: 669 PTVSTRKVKSSVAVASGQTVLLAGLISDTQNKTRSGIPGLDQLPGVGDVFSQTEKIMKRT 728

Query: 409 EIFIAATPFLVKP 421
           E+ I   P +++ 
Sbjct: 729 ELIIFIRPQIIRD 741


>gi|223935099|ref|ZP_03627017.1| type II and III secretion system protein [bacterium Ellin514]
 gi|223895983|gb|EEF62426.1| type II and III secretion system protein [bacterium Ellin514]
          Length = 612

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 140/394 (35%), Gaps = 52/394 (13%)

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           G  N+ ++     ++  + +   +D A  E  + R I      V      +VL+      
Sbjct: 197 GNYNLTIVDDPRTKIARITV---KDPAAPEPLVTRVIQLKYANVT----NIVLNVTGVLQ 249

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
               R      T            ++  +++  L+ A + QV ++  + E  ++     G
Sbjct: 250 DKRSRVAADVRTSQLVVLATDRELTAVDELVAKLDTATK-QVLIEARLVETSKNPTTAKG 308

Query: 215 FQHSITGSSS----GPSKSFAADFG-GKFVSEGGDFSV---------------------- 247
              + T ++     G +   AA F  G   +    F                        
Sbjct: 309 VDWTGTAAAQNVRFGNNSILAAPFTRGTPPTPANPFGTPDQQAVPSTILDPTQPMIAANT 368

Query: 248 -------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                     L+      VL  L      + L+ P    +  ++A+ +          ++
Sbjct: 369 HNGFLPNTFFLNADGASAVLSFLNTDNDAQVLSTPRAVTLDNETATLSVTRAQPIFKTTA 428

Query: 301 ST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPS 350
            T    G + VT  + G +L  TP + +   I LR+  EVS        ++     +   
Sbjct: 429 GTQGSPGGSEVTYTNVGTILKVTPRISANKMISLRVIPEVSSVAGTDRKIVSGQINEADI 488

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           + VR  DT V +PSG T+V+ GL+ DD  +    +PLL  IP LGA FR+    + +  +
Sbjct: 489 FDVRHIDTQVLIPSGNTLVMGGLVSDDRTKSYIKVPLLGDIPYLGAAFRHESKTQNKKNL 548

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
            I  TP +V+    +        + + D+    F
Sbjct: 549 IIFVTPTIVETEDFQPTQTDFLKHKLPDENSTDF 582


>gi|223938688|ref|ZP_03630578.1| type II and III secretion system protein [bacterium Ellin514]
 gi|223892676|gb|EEF59147.1| type II and III secretion system protein [bacterium Ellin514]
          Length = 785

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 112/307 (36%), Gaps = 26/307 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------- 226
           K ++  L++    QV ++  I EV  D  + +G  +  T  S                  
Sbjct: 481 KDIVGKLDVVLA-QVLIEAIIMEVTLDDTRDLGVSYLQTSPSGNNYFQGIGAIKNGPFAS 539

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
             +FA+       S    FS     +   F   + A      I  L+ P +      +A+
Sbjct: 540 FSNFASTATNAANSLPSGFSYLAQFNN-DFSATITAAATDNRINVLSRPRIQTSHAVTAN 598

Query: 287 FTSGGQHLYKTVSSSTG-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
              G    Y T +   G     ++       G+ L  TP +   G + + I  +V +   
Sbjct: 599 LQIGDTVPYVTGTYFGGLNGQASSQYQQTFVGINLQVTPLINPDGLVVMDITQDVQQLGT 658

Query: 342 G--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              ++   +P+   R A   V +    TI+L G +     + K G+PLL  IP+LG LFR
Sbjct: 659 PTIIDNNPVPTTTKRTAQAKVSVKDRDTIILGGFISSTKSRSKSGVPLLMNIPVLGYLFR 718

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           ++  + + TE+ +   P ++       L  +R  D       A+A F     K     E 
Sbjct: 719 STSDSNKRTELIVLIRPTVLPTPEAAALVATRERDRLPGVKAAEADFRKEEAKRLKQAEK 778

Query: 458 SEVEGQN 464
            +V    
Sbjct: 779 IQVPRDE 785


>gi|90020782|ref|YP_526609.1| MSHA biogenesis protein MshL [Saccharophagus degradans 2-40]
 gi|89950382|gb|ABD80397.1| type II and III secretion system protein [Saccharophagus degradans
           2-40]
          Length = 543

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 120/320 (37%), Gaps = 24/320 (7%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            + L  +V    + +  V   +  L          S+ ++ ++   ++   QV L+  I 
Sbjct: 219 KLTLSAIVGGEANGRNVVVNPQAGLVVVRALPSEISAVREFLDRSELSVRRQVILETKIV 278

Query: 204 EVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFS--VKGVLDRFSFETVL 260
           EV+ +   Q G   + I G           D     VS   +       +        +L
Sbjct: 279 EVKLNDGFQAGVNWNEIRGQMLLTKNVETFDVPVDIVSASENVGEIFSSIFRIGDISQLL 338

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----------SSSTGATSVTT 309
             LE    ++ L+ P ++ ++ Q A    G    + T            ++S     +T+
Sbjct: 339 SLLETQGNVQVLSSPRVSTVNNQKAVIRVGSDEFFVTGISSQTTSTAASTTSAPNIELTS 398

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTV 360
              G+ L  TP +   G + L +   VSE         + + +         VR++D+ V
Sbjct: 399 FFSGISLDVTPQIADNGDVILHVHPIVSEVTDQNKDITLGNEKFSLPLALREVRESDSIV 458

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              SG  IVL GL+K+ +  +    P L  +P+L  LFR      E+TE+ I   P +V+
Sbjct: 459 RAQSGQIIVLGGLMKEKLNDVYSKRPGLGDVPVLNTLFRKRSKVSEKTELVILLRPIVVE 518

Query: 421 P-VAMRDLSRPDDHYSVEDD 439
                 D+++     +   D
Sbjct: 519 DNTFADDINQSRQRVNSMSD 538


>gi|254418127|ref|ZP_05031851.1| general secretion pathway protein D [Brevundimonas sp. BAL3]
 gi|196184304|gb|EDX79280.1| general secretion pathway protein D [Brevundimonas sp. BAL3]
          Length = 718

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 109/301 (36%), Gaps = 37/301 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------- 233
            V+  L++    QV ++  + E+  + ++++G Q    G +     ++ A+         
Sbjct: 369 DVIRRLDVR-RQQVLIEAIVVELSDNAVRELGVQWLYGGENGVGLTNYTANATPLVNMAG 427

Query: 234 ---------------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                                      + G        +    F  +++A +       L
Sbjct: 428 GAYAGQLDKDDPLREQLQTLALNSLVGANGFIGGAGVEVGDGLFGFIINAAKTDKGSNLL 487

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGR 327
             P++  +  + A+F  G +    T  +     S   T+    D GV L   P + + G 
Sbjct: 488 QTPSIMTLDNEEATFLVGQEVPITTGQTLLDGNSNPFTTTDRKDIGVRLTVKPQINAGGS 547

Query: 328 IGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           I L ++ EVS    G+  G        R+  TT+ +  G   V  GLL  +     + IP
Sbjct: 548 ITLTLRQEVSAINGGLTRGATDLVLDKRELQTTLVVDDGDIAVAGGLLDQNDIISTDKIP 607

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            L  +P +GALFR++   R  T + +   P +V+          D    + D  +A   +
Sbjct: 608 GLGDLPGVGALFRSNSRQRGRTNLMVFLRPTIVRTREEAQGLAADRWGYMRDQQQAVQPD 667

Query: 447 R 447
           R
Sbjct: 668 R 668


>gi|294627648|ref|ZP_06706230.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598000|gb|EFF42155.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 668

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 112/282 (39%), Gaps = 42/282 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSFAA 232
            V+  L++   +QV ++  + E+     K++G Q  + G +          SG S     
Sbjct: 324 DVIRQLDVH-REQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVP 382

Query: 233 DFGGKFVSEGGDFSVKGVL-------------------------DRFSFETVLHALERAT 267
                  +  G+     VL                         +   F  ++ A++  T
Sbjct: 383 LAAAAAGTRSGNAEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDT 442

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTV 322
               L+ P++  +  + A    G +    T      A      ++   D GV L   P +
Sbjct: 443 GSNLLSTPSIMTLDNEQARILVGQEVPITTGEVLGAANDNLFRTIQRQDVGVELEVRPQI 502

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            + G I L I+ EVS     V+A      +  R+ +T V + +G  + L GLL  + +Q 
Sbjct: 503 NTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQT 562

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            E +PLL  +P LGALFR+   NR++T + +   P +++  A
Sbjct: 563 VEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 604


>gi|283956850|ref|ZP_06374323.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791576|gb|EFC30372.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 470

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 17/264 (6%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S K  +  L    + QV + V+I  V  +     G       +    S+    +   +F 
Sbjct: 199 SVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQ-NFNIGLNSQVNNENSFIQFQ 257

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   
Sbjct: 258 NGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 317

Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345
           SS G  + TT            G++L+  P +   G+I LRI   +S+     +      
Sbjct: 318 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE 377

Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    
Sbjct: 378 PRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVL 437

Query: 404 NREETEIFIAATPFLVKPVAMRDL 427
           N + TEI    TP +V  V    L
Sbjct: 438 NSKATEIVFIITPSIVDSVNAPSL 461


>gi|153952576|ref|YP_001398775.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152940022|gb|ABS44763.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 470

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 17/264 (6%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S K  +  L    + QV + V+I  V        G            S++   +   +F 
Sbjct: 199 SVKNYLQKLENRLKKQVIIDVSILAVSLSESHSSGINWQ-NFDIGLNSQANNENSFIQFQ 257

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   
Sbjct: 258 NGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 317

Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345
           SS G  + TT            G++L+  P +   G+I LRI   +S+     +      
Sbjct: 318 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE 377

Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    
Sbjct: 378 PRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVL 437

Query: 404 NREETEIFIAATPFLVKPVAMRDL 427
           N + TEI    TP +V  V    L
Sbjct: 438 NSKATEIVFIITPSIVDSVNAPSL 461


>gi|149194260|ref|ZP_01871357.1| putative type II protein secretion system D protein [Caminibacter
           mediatlanticus TB-2]
 gi|149135435|gb|EDM23914.1| putative type II protein secretion system D protein [Caminibacter
           mediatlanticus TB-2]
          Length = 450

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/267 (22%), Positives = 99/267 (37%), Gaps = 27/267 (10%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           +  K MN L  +   +V + V I  V      + G   S          S +       +
Sbjct: 186 AVDKFMNNLLNSLTKEVLIDVKIYSVELSKSHKTGIDWS--------QLSLSLPNSSVPL 237

Query: 240 SEGGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK- 296
                F    + +   F+    L+ L +   + +++ P +  ++ Q A  + G    YK 
Sbjct: 238 RAKYIFGSGSIFNSATFNSAAFLNFLAQNGNVNSISNPKIMTLNNQKAIISVGDTIYYKY 297

Query: 297 ---TVSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVN 344
               V+   G             GV+L  TP +   G I L I   +S       +    
Sbjct: 298 ASKVVTDQNGNPQTQYTIGNKFVGVILDITPQISDDGTIILSIAPRISAFRDLNQLSTQT 357

Query: 345 AGDMPSYRV-RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
             DMP         + V++    TIVL GL+ DD      G+P+L +IPI+  LF +   
Sbjct: 358 VRDMPPDTKDNTMLSVVKVKDNDTIVLGGLISDDKSLKVNGVPILKEIPIVKYLFSSKER 417

Query: 404 NREETEIFIAATPFLV---KPVAMRDL 427
              + E+    TP ++   K   +RDL
Sbjct: 418 ITNKKELVFVITPHIINLKKKKTLRDL 444


>gi|57242551|ref|ZP_00370489.1| general secretory pathway protein D [Campylobacter upsaliensis
           RM3195]
 gi|57016836|gb|EAL53619.1| general secretory pathway protein D [Campylobacter upsaliensis
           RM3195]
          Length = 468

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 103/269 (38%), Gaps = 17/269 (6%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           + +  L    + QV + V+I  V  +     G            +     +   +  S  
Sbjct: 198 EYITKLENRLKKQVIIDVSIIAVNLNENHSSGINWQNFNLDFVSTTQNGQNSFIQLQSGQ 257

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G     G+    +F +VL+ L +    + L+ P L A++ Q A  + G    Y+   SS 
Sbjct: 258 GFVKNLGLRANINFNSVLNFLSQNGKTQVLSNPKLMALNNQQAIISVGDTINYQVKESSK 317

Query: 303 GATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------ 347
           G  + TT            G++L   P +    +I LRI   +S+     +         
Sbjct: 318 GTENGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPRT 377

Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P    +K  T V + +  T++L GL+  +  +    +  LSKIP+LG LF     +  
Sbjct: 378 IAPDTIQKKLSTVVSMENNQTLILGGLISHNQIKEASEVSFLSKIPLLGLLFSGDETSSN 437

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
            TEI    TP +V    M  LS  D  + 
Sbjct: 438 STEIVFIITPSIV-DKQMGVLSLKDLGFR 465


>gi|220915838|ref|YP_002491142.1| general secretion pathway protein D [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953692|gb|ACL64076.1| general secretion pathway protein D [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 902

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 120/326 (36%), Gaps = 59/326 (18%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V+   D  +   L +        +    S+ ++++  L+     QV ++  I EV  
Sbjct: 451 SGEVKITADKTQNALLVQA-------SGADFSAVQRLVEKLD-RPRRQVFVEAVIMEVNL 502

Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247
               ++G                     S TG  +    S A   GG      G  S   
Sbjct: 503 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVNSLDMSSAIALGGFLTGYTGPISAEL 562

Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------- 298
              G  +  S   ++ AL+  + +  L+ P L A   + +  T G    +++        
Sbjct: 563 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPSGLS 622

Query: 299 ----SSSTGATS-----------------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
                S TGA+S                 +   +  + L   P +   G I L I+ E +
Sbjct: 623 NLLSGSGTGASSTVGSALGTQGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQT 681

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           E +   +    P+   R   T +      TIV+ GL++D   +    IP L  +PILG L
Sbjct: 682 EEIAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWL 741

Query: 398 FRNSRFNREETEIFIAATPFLVKPVA 423
           FR++   +++  + +  TP++++  A
Sbjct: 742 FRDTTTTKQKVNLLLFLTPYIIRDEA 767


>gi|284432091|gb|ADB84853.1| PilQ [Bdellovibrio bacteriovorus]
          Length = 726

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 101/245 (41%), Gaps = 16/245 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKF 238
               QV+++  I E +    + IG   S TG+            +  PS +      G  
Sbjct: 467 TQPAQVSIEGXIVEAKESFTRNIGVNWSATGAPIKLGSTXRGPVNMNPSFNVNQSAAGSS 526

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +   + +V  +    +    L   E    ++ ++ P +  +S + A      +   + V
Sbjct: 527 GALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQTTEVPVRQV 586

Query: 299 SSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--RVR 354
           + +  AT  +       + L  TP V + G + +++          V++    ++    R
Sbjct: 587 TQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVLVNRQFRGADVSSAGQGAFAVNSR 646

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +A+T V + +G T V+ G+ + +    + G+P   ++P +  LF+    ++E++E+ I  
Sbjct: 647 EANTRVLVKNGQTAVIGGIYQSEATDGEVGVPWFRQLPFVSYLFKTKNISKEKSELLILL 706

Query: 415 TPFLV 419
           TP ++
Sbjct: 707 TPRIM 711


>gi|319791845|ref|YP_004153485.1| general secretion pathway protein d [Variovorax paradoxus EPS]
 gi|315594308|gb|ADU35374.1| general secretion pathway protein D [Variovorax paradoxus EPS]
          Length = 770

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 116/311 (37%), Gaps = 44/311 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAADF---- 234
           + V++ L+     QV ++  I EV  +     G Q        +  G + S   +     
Sbjct: 406 RAVIDKLD-GRRAQVMIEALIVEVSANKAANFGVQWQSALGNNAVIGTNSSLNRNNILAL 464

Query: 235 -----------GGKFVSEGGDFSVKG-VLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                          +  G +  + G +  ++    + +          L+ P L  +  
Sbjct: 465 TQALATRNPAGLASSIQPGLNLGIAGKIGGQYILGAIANFFNSDGDANVLSTPNLLTLDN 524

Query: 283 QSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           + A    G    + T S ++ +        T+V   D G+ L   PT+   G + + I  
Sbjct: 525 EEAKIIIGQNVPFPTGSYASTSGSVGVNPFTTVERKDVGLTLRVRPTINENGTVRMTIFQ 584

Query: 335 EVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           E S       A  + P+   R  +++V +  GG ++L GLL D      E IPL   IP+
Sbjct: 585 ETSTVDQNSLANPNGPTTNKRSIESSVLVEDGGLVMLGGLLSDTYNNNIEKIPLAGDIPV 644

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG LF+N    R ++ + +   P +++  A                 +AF ++R ++I G
Sbjct: 645 LGNLFKNENRTRNKSNLMMFLRPAVMRDGA---------------STEAFAYDRYDEIRG 689

Query: 454 PKEASEVEGQN 464
            +   +    N
Sbjct: 690 QQLQVQPNTDN 700


>gi|157415698|ref|YP_001482954.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157386662|gb|ABV52977.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307748339|gb|ADN91609.1| General secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315930985|gb|EFV09960.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 470

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 17/264 (6%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S K  +  L    + QV + V+I  V  +     G       +    S+    +   +F 
Sbjct: 199 SVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQ-NFNIGLNSQVNNENSFIQFQ 257

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   
Sbjct: 258 NGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 317

Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345
           SS G  + TT            G++L+  P +   G+I LRI   +S+     +      
Sbjct: 318 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE 377

Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    
Sbjct: 378 PRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVL 437

Query: 404 NREETEIFIAATPFLVKPVAMRDL 427
           N + TEI    TP +V  V    L
Sbjct: 438 NSKVTEIVFIITPSIVDSVNAPSL 461


>gi|296273826|ref|YP_003656457.1| type II and III secretion system protein [Arcobacter nitrofigilis
           DSM 7299]
 gi|296098000|gb|ADG93950.1| type II and III secretion system protein [Arcobacter nitrofigilis
           DSM 7299]
          Length = 468

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 116/251 (46%), Gaps = 16/251 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
           KK +N ++I+   Q+ +K  I E+     K++G ++ + G +   S + +          
Sbjct: 162 KKFINKIDISNP-QIYIKAKIVEISETKTKEVGLEYGLNGFNKYSSTNLSTFSSSFNSLS 220

Query: 241 ---------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                        F +  +    +    ++ L++  AI  ++EP++  I+ + +S   G 
Sbjct: 221 NTAINFSEFSTFGFDLNSLSKGLNLSATINFLKQNQAIDVISEPSILCINNKESSIYVGE 280

Query: 292 QHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
              +KT  ++  + +       + G+ L   P + S  +I L+I T + +      + ++
Sbjct: 281 TKSFKTGQTTNTSGTTESFKREEVGLRLKVKPRI-SDNKIILQINTVLEDVKESTTSENL 339

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                ++  TT  L +  ++++ GL+K    Q + G+P+L  IPILG LF+N ++  ++ 
Sbjct: 340 -DTSKKEVITTAILNNAESVIIGGLIKTKKFQTESGLPVLKDIPILGTLFKNEKYINDKM 398

Query: 409 EIFIAATPFLV 419
            + +  TP++V
Sbjct: 399 NLVVIITPYIV 409


>gi|146343151|ref|YP_001208199.1| general secretion pathway protein D [Bradyrhizobium sp. ORS278]
 gi|146195957|emb|CAL79984.1| General secretion pathway protein D [Bradyrhizobium sp. ORS278]
          Length = 768

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 113/275 (41%), Gaps = 29/275 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-------V 247
           QV +  TIAEV        G Q  ++    G      +    +  S     +       +
Sbjct: 488 QVGIDATIAEVTLTNELSYGVQAYLSSKVLGLGTDRGSITNTQTTSVATATTAAATTALI 547

Query: 248 KGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
              L  F+F          +L AL   T+++ L+ P+L  I+ Q+A+   G      T S
Sbjct: 548 NRALPGFNFLIGHEASPNMILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGS 607

Query: 300 ------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
                 S+T   ++   + G++L   P + + G + L ++ E+S       A   P+   
Sbjct: 608 ATVLSSSNTVVNTIDYRNTGIILRVVPRIAANGNVRLEVEQEISNVAAQTAASLTPTVSQ 667

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           RK  + + + +G T++LAGL+ +     + GIP   +IPILG  F +       TE+ I 
Sbjct: 668 RKVKSAISVANGQTVLLAGLISEQQTGNRNGIPGFDEIPILGDTFSHQDKKGTRTELIIF 727

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             P +++  +        D + V ++ ++     V
Sbjct: 728 IRPQIIRDGS--------DAHQVAEELRSKLRGSV 754


>gi|242277876|ref|YP_002990005.1| type II and III secretion system protein [Desulfovibrio salexigens
           DSM 2638]
 gi|242120770|gb|ACS78466.1| type II and III secretion system protein [Desulfovibrio salexigens
           DSM 2638]
          Length = 534

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 115/247 (46%), Gaps = 12/247 (4%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           +++ L++    QV++K  + EV      ++GF+   + ++ G     A DFG  F   G 
Sbjct: 259 IISKLDVRT-MQVSIKAYLVEVTLTDETKLGFEWMFSTNADGTDLKGALDFGHIFDPTGI 317

Query: 244 DFSVK-----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
             + +      +++  +F+ +++      + R ++ P + A+  Q AS   G +      
Sbjct: 318 ANTAQEALKFSIINSDNFKMMMNFFASDDSSRVVSAPHIVALDNQKASIAVGTEIPILKL 377

Query: 296 KTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
              S ++    + T+D   +G+ L+ TPT+     + L+I   +S  +      D     
Sbjct: 378 TQTSVTSQQNVIKTYDHRKFGMQLNITPTIAENRDVTLKIDQTLSSLLADDTDPDKWQST 437

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A TTV +    T+V+ GL+  +    K+G P L  +P+LG LF +   +  ++E+ +
Sbjct: 438 DRAASTTVLVKDAQTLVIGGLMTVNSALDKKGAPYLRNMPVLGPLFGSQDDSMTKSELLL 497

Query: 413 AATPFLV 419
             TP+++
Sbjct: 498 FLTPYVI 504


>gi|253987556|ref|YP_003038912.1| hypothetical protein PAU_00073 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779006|emb|CAQ82166.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 344

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 9/236 (3%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKSFAADFGGKFVSEGGDFS 246
             + QV +   I    R+ L ++G    I      ++S        +            +
Sbjct: 111 TPQQQVQITAHIVTSSREALHELGIYWGIPIGEQLNTSTGINRLNINQAANDNMHRFALN 170

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  +        +   LE+   +  +A P LTA   Q AS   G    Y  VS     ++
Sbjct: 171 IARIHTSLLELELSA-LEQENLLDIIASPRLTASHQQLASIKQGSDIPY--VSQEKEKST 227

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPS 364
           V   +  + +  TP +L   +I L ++   + P I ++   G+  +   ++  T V + +
Sbjct: 228 VQFKEAVLGMEVTPHILRKDKIRLSLKISQNMPGISISQGGGENLTIDKQEIMTQVTVKN 287

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T++L G+ +    +  + IP LS IP+LG+LF          E+ I  TP L+ 
Sbjct: 288 GETLILGGIFQQKKGEKTQKIPYLSDIPLLGSLFDQKGHKHSRRELIIFITPQLMD 343


>gi|226939985|ref|YP_002795058.1| type II and III secretion system protein [Laribacter hongkongensis
           HLHK9]
 gi|226714911|gb|ACO74049.1| type II and III secretion system protein [Laribacter hongkongensis
           HLHK9]
          Length = 616

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 122/294 (41%), Gaps = 55/294 (18%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------- 245
            QV ++ TIAEV      Q G   S  G   G +  FA++F G  +S+            
Sbjct: 304 RQVMIEATIAEVELTRDYQAGVDWSRIGD--GKNWQFASNFSGNGLSQNAGNPAQYFGTV 361

Query: 246 ----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                     +  G+    S    +  LE     R L+ P L A++ QSA         Y
Sbjct: 362 GQVLQGSTTPAFTGLYRSGSLSAAIRLLEGFGRTRVLSSPKLMALNNQSAILKVVDNVPY 421

Query: 296 KT------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340
            T              ++T  + + +   G+V++ TP +   GR+ L ++  ++      
Sbjct: 422 FTLKIKYEPGTTTNPPTTTYESELHSVPVGIVMNITPQIAPDGRVSLNVRPTITNITGFQ 481

Query: 341 --------------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
                              G +P  +VR+ ++T+ L SG   VL GL++D I +   GIP
Sbjct: 482 RDPAVQLVLADKGASDPGLGLVPQLQVRELESTLRLQSGEIGVLGGLIQDKIDKDSNGIP 541

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLS-----RPDDHY 434
           LLS++P++GALF   + +  +TE+ +   P LV +P    DLS      PD  +
Sbjct: 542 LLSQLPVVGALFGLRKESARKTELVVFLKPTLVSQPSLTTDLSALRNALPDSRF 595


>gi|254483140|ref|ZP_05096374.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2148]
 gi|214036662|gb|EEB77335.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2148]
          Length = 727

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 12/247 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGG--K 237
           K  ++ L++    QV ++ +I EV      + G + + + S         F +   G   
Sbjct: 452 KTALDQLDVV-ATQVIIEASIIEVSLTDELRYGLEWTFSNSLGADYDGSGFLSSIAGAES 510

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             S    FS        +   VL+AL   + +  ++ P++  +    A    G Q     
Sbjct: 511 PASIVPGFSYTVTNSIGNVSAVLNALAEESLLNIISTPSVMVLDNHYAYIHVGQQVPIID 570

Query: 298 VSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
             + + A        S+T  D GV L   P+V + G I + +   V++      A    +
Sbjct: 571 SQTGSLANDTDRVTQSITYRDTGVKLDVRPSVNAGGLITMDVAQSVTDVGEIDAATGQRA 630

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  ++ V + S  ++VL GL++++     +G+P L  +PI+G+LF         TE+
Sbjct: 631 FLERNIESRVAVRSNESVVLGGLIRENSGTASQGVPWLHSVPIVGSLFGTDSARSNRTEL 690

Query: 411 FIAATPF 417
            +  TP 
Sbjct: 691 LVIITPR 697


>gi|302383551|ref|YP_003819374.1| general secretion pathway protein D [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194179|gb|ADL01751.1| general secretion pathway protein D [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 688

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/260 (23%), Positives = 105/260 (40%), Gaps = 22/260 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + +++ L++    QV ++V I E+  ++ +QIG Q  + G+           F       
Sbjct: 384 QDLISQLDLR-RAQVKIEVAIVEITGELGEQIGVQLGLGGAVPDDGVIGGTSFSNGGSDL 442

Query: 242 GGDFSVKG--------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
           G   S  G                    F  +L AL   +A   L+ P++T +  Q A  
Sbjct: 443 GTVLSALGYPAGRLLGQGLSLAAGSEGEFGLLLQALGTNSAANLLSSPSVTVLDNQPAEI 502

Query: 288 TSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PV 340
             G    ++T S      S+   T+++  D G+ L   P V     + L +  EVS    
Sbjct: 503 VVGQNVPFRTGSFATDGNSTNPFTTISREDVGLTLRVIPRVHEGDVVKLDVSQEVSSLVT 562

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +          R   T+V    G TIVL GL+ DD       +P LS +P++G  FR+
Sbjct: 563 TNITGAADLITNRRSIQTSVLANDGETIVLGGLVTDDRMSNNSRVPGLSSLPVVGNAFRS 622

Query: 401 SRFNREETEIFIAATPFLVK 420
            R ++    +FI   P +++
Sbjct: 623 RRDSQTRRTLFIFLKPTILR 642


>gi|241762850|ref|ZP_04760913.1| type IV pilus secretin PilQ [Acidovorax delafieldii 2AN]
 gi|241368025|gb|EER62230.1| type IV pilus secretin PilQ [Acidovorax delafieldii 2AN]
          Length = 712

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 100/276 (36%), Gaps = 42/276 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------- 225
           ++++  L++A   QV ++  I E R    + +G +   T   +                 
Sbjct: 434 RQLLLSLDVA-VRQVLIEARIVEARDSFGRSLGVRLGGTDLRANRGGDGGYGIGGDNRVA 492

Query: 226 ----------------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
                                    +  A             S+            L A+
Sbjct: 493 FGTSYNNAVASSGAGGTTTTTGNFVNLPASLSNVNSVGSFALSIFNSAANRFLTLELSAM 552

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E     R ++ P +       A    G ++ Y ++++  GAT++      + L  TP + 
Sbjct: 553 EADGKGRIVSSPRIITADQTKALIEQGTEYPY-SITAPNGATTLAFKKAVLKLEVTPQIT 611

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             G I L +  ++++   G       +   +   T + + +GGT+V+ G+ + +    + 
Sbjct: 612 PEGNIILDL--DINKDSRGETTTQGVAIDTKHIKTQILIENGGTVVIGGIFEMEDTNQEN 669

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP+L  +P++G LF++      + E+ +  TP ++
Sbjct: 670 KIPVLGDVPVVGNLFKSRTKESTKREMLVFITPKVI 705


>gi|254517138|ref|ZP_05129196.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
 gi|219674643|gb|EED31011.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
          Length = 770

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 107/275 (38%), Gaps = 6/275 (2%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G         R V   E        +       K+ +  L++    QV ++ +I EV+ 
Sbjct: 459 SGTGTNELVDVRVVADEENNALMVYADGKQYGIVKEALKQLDVV-ATQVIIEASIMEVQL 517

Query: 208 DILKQIGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               + G + +   G  S          G    +    FS            VL+AL   
Sbjct: 518 IDELRYGLEWTFKNGLGSNYDGLGTLAAGAAGPAAVAGFSYTVSNSVGDISAVLNALSEE 577

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTV 322
           + I  ++ P++  +    A  + G Q          +      ++T  D GV L   P+V
Sbjct: 578 SLINVISTPSVMVLDNHVAFISVGDQVPVLQGQTITNGGNSVQNITYRDTGVQLSVRPSV 637

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            + G + + I+  V +     +A    ++  R  ++ V + S  ++VL GL++++     
Sbjct: 638 NAGGLVTMDIEQSVIDVGAIDSATGQRAFLDRTINSRVAVRSSESVVLGGLIRENSSLGD 697

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            G+P+L +IP+ G+LF  +  +   TE+ +  TP 
Sbjct: 698 SGVPILREIPLFGSLFGTTTTDSRRTELLVIITPR 732


>gi|331004879|ref|ZP_08328296.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC1989]
 gi|330421333|gb|EGG95582.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC1989]
          Length = 553

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 122/288 (42%), Gaps = 24/288 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFG 235
           ++ ++ +    ++ + QV ++  I EV+     Q G   +           +  F     
Sbjct: 265 AAVRRFLENTRLSVKRQVIIEAKILEVQLSKNHQTGVNWNAINGQLLLGKNASDFDTGVT 324

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              +SEG       ++      T+L  LE    ++ L+ P ++ ++ Q A    G    +
Sbjct: 325 INEISEGVGEVFSSLIRISDTSTLLSLLETQGEMQVLSSPRVSTVNNQKAVIRVGTDQFF 384

Query: 296 KTV-----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----- 339
            T            ++S+    +++   G+ L  TP +   G + L I   +S       
Sbjct: 385 VTGISNSTISNASSTTSSPDIELSSFFSGISLDVTPQISDEGDVILHIHPVISTVTEEQK 444

Query: 340 --VIGVNAGDMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             V+G +A  +P     +R++D+ V+  SG  IVL GL+++ I  +    P LS IP+ G
Sbjct: 445 NIVVGDSAFSLPLALRDIRESDSIVKAKSGQVIVLGGLMQERINHVGGKRPGLSDIPVAG 504

Query: 396 ALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVEDDAKA 442
            LF ++   R ++E+ I   P +V +   + D +   D +S    ++A
Sbjct: 505 GLFNSNTDIRSKSELIILLKPTVVEQDSWVDDFNTSQDRFSKLTASQA 552


>gi|261257910|ref|ZP_05950443.1| w0022 [Escherichia coli O157:H7 str. FRIK966]
          Length = 275

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 16/220 (7%)

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSS 301
            +     + ++  +L AL  ++    LA P++  +    A+F  G +       +T S  
Sbjct: 30  GIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGD 89

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADT 358
               +V     G+ L   P +     + L I+ EVS      +        ++  R    
Sbjct: 90  NIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 149

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + + +G T+V+ GLL   I+  +  +PLL  IP+LG LFR       +  + +   P +
Sbjct: 150 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAKSEQTAKRNLMLFIRPTI 209

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           ++           D +      K   FN+       KE +
Sbjct: 210 IR---------ERDGFRHASAEKYQSFNQEQVQSRGKETT 240


>gi|124515780|gb|EAY57289.1| putative general secretion pathway protein D [Leptospirillum
           rubarum]
 gi|206602163|gb|EDZ38645.1| Putative general secretion pathway protein D [Leptospirillum sp.
           Group II '5-way CG']
          Length = 555

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 113/259 (43%), Gaps = 11/259 (4%)

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            TG++               V  GG F+  GV +  S  T+L+AL+  + ++TL+ P + 
Sbjct: 290 ATGAAGAAQSLTGLTGLIAGVLTGGSFNYGGV-NYPSIGTLLNALQTDSDVKTLSTPEIL 348

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           A   Q A  T G    + T  S T      T +   + G+ L  TP +L+  R+ L ++ 
Sbjct: 349 ATDSQKAKITVGEDVPFITGQSQTVGGNVMTMIQRQNVGITLDITPHILAHDRVRLNLKQ 408

Query: 335 EVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++               P+   R   T + + SG T+V+ GL+  +    K  IP L +
Sbjct: 409 TITALTNASQLIGTMAVGPTTTKRSTKTILTVRSGQTVVIGGLISSEKSLNKSTIPWLGE 468

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           IP+LG LF +++  ++  ++ I  TP++++        + D    +++ A+      +  
Sbjct: 469 IPVLGYLFSSTQNEKKRDDLLIFLTPYIIRNAYSFAQVKHDAPAELKEAARKD--GLIQT 526

Query: 451 IYGPKEASEVEGQNYKGAI 469
           +  PK+ S      Y G +
Sbjct: 527 LILPKKTSSRSAGFYLGTV 545


>gi|86151899|ref|ZP_01070112.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|148925643|ref|ZP_01809331.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|315124908|ref|YP_004066912.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841007|gb|EAQ58256.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|145845653|gb|EDK22744.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|315018630|gb|ADT66723.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 470

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 17/264 (6%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S K  +  L    + QV + V+I  V  +     G       +    S+    +   +F 
Sbjct: 199 SVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQ-NFNIGLNSQVNNENSFIQFQ 257

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   
Sbjct: 258 NGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 317

Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345
           SS G  + TT            G++L+  P +   G+I LRI   +S+     +      
Sbjct: 318 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE 377

Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    
Sbjct: 378 PRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVL 437

Query: 404 NREETEIFIAATPFLVKPVAMRDL 427
           N + TEI    TP +V  V    L
Sbjct: 438 NSKATEIVFIITPSIVDSVNAPSL 461


>gi|86153104|ref|ZP_01071309.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613593|ref|YP_001001123.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167006016|ref|ZP_02271774.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85843989|gb|EAQ61199.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249586|gb|EAQ72545.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|315058928|gb|ADT73257.1| Type II secretion outermembrane pore forming protein (PulD)
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 470

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 17/264 (6%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S K  +  L    + QV + V+I  V  +     G       +    S+    +   +F 
Sbjct: 199 SVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQ-NFNIGLNSQVNNENSFIQFQ 257

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   
Sbjct: 258 NGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 317

Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345
           SS G  + TT            G++L+  P +   G+I LRI   +S+     +      
Sbjct: 318 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE 377

Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    
Sbjct: 378 PRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVL 437

Query: 404 NREETEIFIAATPFLVKPVAMRDL 427
           N + TEI    TP +V  V    L
Sbjct: 438 NSKATEIVFIITPSIVDSVNAPSL 461


>gi|27381133|ref|NP_772662.1| general secretion pathway protein D [Bradyrhizobium japonicum USDA
           110]
 gi|27354300|dbj|BAC51287.1| blr6022 [Bradyrhizobium japonicum USDA 110]
          Length = 793

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 129/307 (42%), Gaps = 34/307 (11%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSG 225
            NQ +    ++ +  ++   + Q+ ++ TIAEV  +     G Q        SI+ + SG
Sbjct: 485 ANQESQRIVEQTIRQIDRP-QRQIAIEATIAEVTLNDQLNYGVQFFLASQKGSISNTISG 543

Query: 226 PSKSFAADFGGKFVSEGGDFSVKG------------VLDRFSFETVLHALERATAIRTLA 273
            S S       +  S   + +               +    S   VL AL   T ++ L+
Sbjct: 544 VSNSATIGSNTEPASNAVNAAAGALLGRALPGFNFLIGAENSPRVVLDALHGITNVKVLS 603

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
            P+L  +  Q+A+   G Q  + T +      ++T   ++   + G++L   P   + G 
Sbjct: 604 NPSLVVLDNQAATLQVGDQVPFSTGTATVLTANNTVVNTIDYKNTGIILRVLPRANANGN 663

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L I+ E+S    G      P+   R+  +++ + SG T++LAGL+ +   + ++G+P+
Sbjct: 664 VVLDIEQEISSVAAGSANSLTPTISQRRVKSSIAVTSGQTVLLAGLISETENRQRQGLPI 723

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  IP +G  F +    R  TE+ +   P ++K           D + + ++ +     R
Sbjct: 724 LDSIPGMGDAFSHQTTARARTELILFIRPTVIKDGV--------DAHVIAEEMRTKMNGR 775

Query: 448 VNKIYGP 454
           +     P
Sbjct: 776 LVGTSNP 782


>gi|197121137|ref|YP_002133088.1| general secretion pathway protein D [Anaeromyxobacter sp. K]
 gi|196170986|gb|ACG71959.1| general secretion pathway protein D [Anaeromyxobacter sp. K]
          Length = 904

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 119/324 (36%), Gaps = 57/324 (17%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V+   D  +   L +        +    S+ ++++  L+     QV ++  I EV  
Sbjct: 451 SGEVKITADKTQNALLVQA-------SGADFSAVQRLVEKLD-RPRRQVFVEAVIMEVNL 502

Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247
               ++G                     S TG  +    S A   GG      G  S   
Sbjct: 503 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVNSLDMSSAIALGGFLTGYTGPISAEL 562

Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
              G  +  S   ++ AL+  + +  L+ P L A   + +  T G    +++  + +G +
Sbjct: 563 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPSGLS 622

Query: 306 S--------------------------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           +                          +   +  + L   P +   G I L I+ E +E 
Sbjct: 623 NLLSGSSATSTVGSALGTQGLSSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQTEE 681

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +   +    P+   R   T +      TIV+ GL++D   +    IP L  +PILG LFR
Sbjct: 682 IAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFR 741

Query: 400 NSRFNREETEIFIAATPFLVKPVA 423
           ++   +++  + +  TP++++  A
Sbjct: 742 DTTTTKQKVNLLLFLTPYIIRDEA 765


>gi|255322161|ref|ZP_05363307.1| type II and III secretion system protein [Campylobacter showae
           RM3277]
 gi|255300534|gb|EET79805.1| type II and III secretion system protein [Campylobacter showae
           RM3277]
          Length = 481

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/331 (19%), Positives = 122/331 (36%), Gaps = 55/331 (16%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
             +L+    +I      +  +   ++ +G        S+ + + +    + QV + V+I 
Sbjct: 129 KAILNNTTESIVAPDPIINANAGLVTVTGTAAQLRRVSEYIKD-IQERLKKQVVIDVSII 187

Query: 204 EVRRDILKQIGFQHS-----------------------ITGSSSGPSKSFAADFG----- 235
            V        G   S                          ++  P+ + +  +G     
Sbjct: 188 SVELANSYTKGVDWSKFNIGFKTGLYNRTVVTGVTETVGQDAAGNPTTTLSRTYGLIPAN 247

Query: 236 -------GKFVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                  G  +  G   S+  +    F+ + VL+ LE     + ++ P +T ++ Q A  
Sbjct: 248 DLFWSNRGNGLGGGFSQSMNLIAGFNFNLDGVLNFLETNGRTKVVSSPKITTLNNQQALI 307

Query: 288 TSGGQHLYKTVSSS------TGATSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVS 337
           + G    Y+    S       G T++T   Y    G++L+  P V    +I LRI   +S
Sbjct: 308 SVGDNVNYRVQEESQNNNALNGKTTITYKQYSVFIGILLNILPEVSDDNKIMLRINPSLS 367

Query: 338 EPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                 +            P    +K  T V++ SG TIVL GL+     +    +P L 
Sbjct: 368 SFKYNEDDVRQSTTIREIAPDTIQKKLSTVVQVNSGDTIVLGGLIAQSKGKENTKVPFLG 427

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
            IP+LG  F++++ N   TE+    TP +V 
Sbjct: 428 DIPVLGHAFKSTKDNLRTTELVFIITPRIVD 458


>gi|289662170|ref|ZP_06483751.1| fimbrial assembly protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 652

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 84/203 (41%), Gaps = 8/203 (3%)

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
              +     GG   S     +   +   F+ +  L A++       ++ P +   + +  
Sbjct: 444 SGLNIDLGAGGFTTSGAAGLAYTLLGSHFNLDIELSAMQEEGRGEVVSNPRIVTANQREG 503

Query: 286 SFTSGGQHLYKTVSSST-----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
               G +  Y T+S +         +V   +  + L  TPT+ +  R+ L +  +  E  
Sbjct: 504 VIKQGREIGYVTISGAGAAGGGSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVA 563

Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             +     G +P    R+ +T V +  G T+V+ G+ +   ++    +P L  IP LG L
Sbjct: 564 RFITLPQYGTVPEINRREVNTAVLVADGETVVIGGVYEFTDRESVAKVPFLGDIPFLGNL 623

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F+    ++E+ E+ +  TP +++
Sbjct: 624 FKKRGRSKEKAELLVFVTPKVLR 646


>gi|162454464|ref|YP_001616831.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So
           ce 56']
 gi|161165046|emb|CAN96351.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So
           ce 56']
          Length = 774

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 104/279 (37%), Gaps = 44/279 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+     QV ++  + E     ++ IG Q    G+ S  + +            
Sbjct: 491 EELVRSLDTQTP-QVLIEARVVEATSRYVRDIGIQWGGDGTFSAATGNPTGLVFPSAIGI 549

Query: 230 -------------------------FAADFG---GKFVSEGGDFSVKGVLDRFSFETVLH 261
                                    FA +     G        F++  + +  +    L 
Sbjct: 550 AGGATDSNSPTGGLSPFSSQVSNPNFAVNLPAIVGAGQGGALGFTLGSINNTVNLGVRLS 609

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           A E +  +R ++ P +  +  + A  + G    +  +S+       T  +  + L   P 
Sbjct: 610 AAEASGMLRVVSSPRILTLDNREARISQGTLIPFSQISAQ--GVQTTFQEAKLQLLVKPH 667

Query: 322 VLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           V S G + + ++    EP     +A   P+   R+A+T + +  G T V+ G+   +  +
Sbjct: 668 VTSDGSVAMHVKINRDEPDFNQTSARGDPTILKREAETDLLIMDGHTAVIGGIFTRNTGR 727

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             + +P    IP+LG LF+  R +    E+ I  TP +V
Sbjct: 728 NLDQVPFFGDIPVLGLLFQRRRASDTRNELVIFLTPRIV 766


>gi|191174167|ref|ZP_03035680.1| bacterial type II and III secretion system protein [Escherichia
           coli F11]
 gi|191174561|ref|ZP_03036057.1| bacterial type II and III secretion system protein [Escherichia
           coli F11]
 gi|300972444|ref|ZP_07171951.1| bacterial type II/III secretion system short domain protein
           [Escherichia coli MS 200-1]
 gi|190905169|gb|EDV64812.1| bacterial type II and III secretion system protein [Escherichia
           coli F11]
 gi|190905585|gb|EDV65211.1| bacterial type II and III secretion system protein [Escherichia
           coli F11]
 gi|300309168|gb|EFJ63688.1| bacterial type II/III secretion system short domain protein
           [Escherichia coli MS 200-1]
          Length = 421

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 12/245 (4%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +N +++A  DQV ++  + E        + F                +  G    + GG 
Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298
           F   G+ D       L A++  +  + ++ P +   SGQ+   + G    + T       
Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGES 297

Query: 299 -SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
              +    ++  HD GV L  TP V+  G++ L I T          A D+ +   R+  
Sbjct: 298 AGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDIIT-NQRQIQ 356

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTV++  G T++L GL+       +  +P++SKIP++G +F +   + E+  ++I  T  
Sbjct: 357 TTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKADSNEQRIMYILLTAH 416

Query: 418 LVKPV 422
           +++P+
Sbjct: 417 IIRPL 421


>gi|87311311|ref|ZP_01093433.1| general secretion pathway protein D (precursor) [Blastopirellula
            marina DSM 3645]
 gi|87286051|gb|EAQ77963.1| general secretion pathway protein D  (precursor) [Blastopirellula
            marina DSM 3645]
          Length = 1199

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 135/324 (41%), Gaps = 56/324 (17%)

Query: 183  KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSG---PSKSFA 231
            K++  L+ A    V+++V IA+VR   ++++GF+  +  S        SSG   P  +F 
Sbjct: 777  KIVEELD-ARPPMVSIQVLIADVRLGKIEELGFEFGLQDSLLFDRSTVSSGQLDPGYNFN 835

Query: 232  ------------------------ADFG-GKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
                                    +D G G+     G           S   ++ AL++ 
Sbjct: 836  NAALGNSSSAASLATASAVGSQGLSDLGLGRTNPALGYGGFVFSAASESVNVLIRALQQD 895

Query: 267  TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVL 323
              +  LA P +  +  Q A    G +  Y T +  T      S+T  + GV+L+  P + 
Sbjct: 896  NRMEVLARPHVMTMDNQPAFIQVGQRVPYITDTQVTNQGTVNSITLENTGVILNVIPRIS 955

Query: 324  SPGRIGLRIQTEVSEPVIGVNAGDM-----------PSYRVRKADTTVELPSGGTIVLAG 372
              G + + +Q E SE     +   +           P    + A TTV   SG TIVL G
Sbjct: 956  PDGMVVMYVQAERSEVGNEADGIPISINQNGDVIRAPRINTQTATTTVSARSGQTIVLGG 1015

Query: 373  LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
            L++     +   +PLL  IP++G+LFR   F+ + +E+ I  TP +V   + +D+ R  +
Sbjct: 1016 LIQKRTTVVSRRVPLLGDIPVVGSLFRYDSFDGDRSELMIILTPTVVD--SDQDVERVRE 1073

Query: 433  HYSVEDDAKAFFFNRVNKIYGPKE 456
                E    ++    V +IYG + 
Sbjct: 1074 Q---EMSRMSWCLADVAEIYGAEA 1094


>gi|86157114|ref|YP_463899.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773625|gb|ABC80462.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 897

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 118/326 (36%), Gaps = 59/326 (18%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V+   D  +   L +        +    S+ ++++  L+     QV ++  I EV  
Sbjct: 446 SGEVKITADKTQNALLVQA-------SGADFSAVQRLVEKLD-RPRRQVFVEAVIMEVNL 497

Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247
               ++G                     S TG  S    S A   GG      G  S   
Sbjct: 498 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVSSLDMSSAIALGGFLTGYTGPISAEL 557

Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
              G  +  S   ++ AL+  + +  L+ P L A   + +  T G    +++  +  G +
Sbjct: 558 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPQGLS 617

Query: 306 S----------------------------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           +                            +   +  + L   P +   G I L I+ E +
Sbjct: 618 NLLSGSGTGGSSTVGAALGTQGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQT 676

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           E +   +    P+   R   T +      TIV+ GL++D   +    IP L  +PILG L
Sbjct: 677 EEIAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWL 736

Query: 398 FRNSRFNREETEIFIAATPFLVKPVA 423
           FR++   +++  + +  TP++++  A
Sbjct: 737 FRDTTTTKQKVNLLLFLTPYIIRDEA 762


>gi|21232657|ref|NP_638574.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767269|ref|YP_242031.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114464|gb|AAM42498.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572601|gb|AAY48011.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 648

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 107/286 (37%), Gaps = 48/286 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------- 221
           +++++ ++    DQV ++  I        + +G +  +TG                    
Sbjct: 358 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGVTGATGRGILSGSLESNVNYLNT 416

Query: 222 --------SSSGPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                   ++ G   +  A             GG   S     +   +   F+ +  L A
Sbjct: 417 SAQSRLEQANGGQVTTLPAHLFPSGLNVDLGAGGFTNSGAAGLAYTLLGSHFNLDIELSA 476

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLH 317
           ++       ++ P +   + +      G +  Y T+     +      +V   +  + L 
Sbjct: 477 MQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGAGVAGGGSQANVQFKEVLLELK 536

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            TPT+ +  R+ L +  +  E    +     G +P    R+ +T V +  G T+V+ G+ 
Sbjct: 537 VTPTITNDNRVFLNMNVKKDEVARFITLPQYGTVPEINRREVNTAVLVADGETVVIGGVY 596

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +   ++    +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 597 EFTDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642


>gi|115376293|ref|ZP_01463533.1| type IV pilus secretin PilQ subfamily, putative [Stigmatella
           aurantiaca DW4/3-1]
 gi|310823667|ref|YP_003956025.1| type IV pilus secretin PilQ [Stigmatella aurantiaca DW4/3-1]
 gi|115366718|gb|EAU65713.1| type IV pilus secretin PilQ subfamily, putative [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396739|gb|ADO74198.1| Type IV pilus secretin PilQ [Stigmatella aurantiaca DW4/3-1]
          Length = 906

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 104/272 (38%), Gaps = 36/272 (13%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----------- 229
           ++ ++  L+     QV ++  I E      + IG Q    G ++  + +           
Sbjct: 629 ARALVRNLDTQTP-QVLIESRIVEATTAFSRSIGVQWGGRGQANAATGNATGLIFPNTIG 687

Query: 230 ------------FAADFGGKF-------VSEGG--DFSVKGVLDRFSFETVLHALERATA 268
                       F+ D G          + +GG   F+             L A E    
Sbjct: 688 GFGSAGGGTPAGFSGDPGFAVNLPAPTTLGQGGALGFTFGSAGGALGLNLRLSAAENDGY 747

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           ++T++ P +T +   +A  + G    +   S++   T+    +  + L  TP +   G I
Sbjct: 748 VKTISAPKVTTLDNNTARISQGVSIPFSQTSANGANTT--FIEARLSLEVTPHITQDGSI 805

Query: 329 GLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            + I  + ++P      A   P+ + ++A+T V +  G T V+ G+           IP 
Sbjct: 806 LMNIIAQNNQPDAANTGANGQPAIQRKEANTQVLVKDGDTTVIGGIYVRRGSTNHASIPF 865

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SKIP+LG  FR +    +  E+ I  TP ++
Sbjct: 866 FSKIPVLGFFFRQTTERDDRQELLIFITPRIL 897


>gi|297538911|ref|YP_003674680.1| type II and III secretion system protein [Methylotenera sp. 301]
 gi|297258258|gb|ADI30103.1| type II and III secretion system protein [Methylotenera sp. 301]
          Length = 638

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 104/253 (41%), Gaps = 18/253 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            +V L++ + EV+R  L+ +G           P    +       +    D  V G    
Sbjct: 327 PEVMLELQVMEVKRSYLQNLGVN---------PITGISVPVPSSGILTVKDLRVSGNSLV 377

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---SSSTGATSVTTH 310
            +    L     +  +  LA P +   +  +A    G +    T    S+   + +V   
Sbjct: 378 VNGIPGLVFDATSGDVNLLANPKIRVKNKDTARIHIGEKVPVFTANVASTGVTSQTVQYI 437

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEV----SEPVIGVNAGDMPSYR--VRKADTTVELPS 364
           D G+ L   PT+ +   + ++I   V     + V    A    ++R   R A T + L  
Sbjct: 438 DAGLKLEVEPTISAADDVTIKINLNVGSIGDKVVASSGASQSIAFRVGTRLATTQLRLHD 497

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T +LAGL+ D  ++   GIP LSKIP+LG LF N   ++ +TEI ++ TP +++    
Sbjct: 498 GETQILAGLIDDQDRKNVSGIPGLSKIPLLGKLFSNQTDDKVKTEIVLSITPHIIRQRTP 557

Query: 425 RDLSRPDDHYSVE 437
           +     D     E
Sbjct: 558 QQAHEADIWTGSE 570


>gi|325983467|ref|YP_004295869.1| type II and III secretion system protein [Nitrosomonas sp. AL212]
 gi|325532986|gb|ADZ27707.1| type II and III secretion system protein [Nitrosomonas sp. AL212]
          Length = 756

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 85/414 (20%), Positives = 153/414 (36%), Gaps = 60/414 (14%)

Query: 51  SIGLNKVIILQVPVDVQ-DVLVSDPTKAD------------VVVHSPRTMYLFGKNVGQA 97
           + G+N V    +  D +  + V D T  D              V +  ++ ++     + 
Sbjct: 210 TAGINFVFDKDIRQDGKISIFVRDNTIEDILKLILTTNQLAYKVLNSNSLLIYPNTPAK- 268

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
              L  +    + +  I    D+  +   +R  +   +I V    +  ++        D+
Sbjct: 269 ---LKDYQELVVRSFQIA-HTDVKQMVAMVRGIVKAKDIYVNEQLNLFIMR-------DT 317

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR--DILKQIGF 215
             A+ L+E  +S                  LN   E +V L V I E+ R    L    F
Sbjct: 318 LEAIRLTERIVS------------------LNDLAEPEVVLDVAILEISRANTFLLGPNF 359

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAE 274
             S+  + +G +       GG   +    F++ G+     + E  +  +   +    LA 
Sbjct: 360 PQSLQFNYAGNA------VGGAPAALISQFNMPGLKSFGMTSEAKIDFMHNLSIGDVLAN 413

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-----TTHDYGVVLHFTPTVLSPGRIG 329
           P +   + + A    G +  + T +   G  S+     T  D GV L   P + S   + 
Sbjct: 414 PRIRVANREKAKIHVGEKRPFFTANVQPGINSIVTSTPTFIDLGVKLDVEPRIGSNNDVT 473

Query: 330 LRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           ++I  EVS     V+       P    R A+T + +  G T VLAGL++D      +G+ 
Sbjct: 474 MKITLEVSSSTQNVSGPGGATAPLVVTRNAETLLTVKDGETQVLAGLIQDSDTTNVKGLA 533

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
            L  IP L  LF N    R + E+ +  TP +V+ +        + H+    +A
Sbjct: 534 GLLNIPGLDRLFSNQDVRRSKNEVVLLITPRIVRNLPNPTNQENEYHFGTASEA 587


>gi|291333680|gb|ADD93369.1| type II and III secretion system protein [uncultured marine
           bacterium MedDCM-OCT-S01-C143]
          Length = 437

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 108/298 (36%), Gaps = 58/298 (19%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------SITGSSSGPSKSF 230
           S ++++  L++    QV ++  I EV      Q G             I G  SG   + 
Sbjct: 28  SMRRLIEKLDVP-RTQVYVEAAILEVTVTDKGQRGLDWHSPFGVSDSGIGGVDSGSVGNL 86

Query: 231 ----------------------------AADFGGKFVSEGGDFSVK-GVLDRFSFETVLH 261
                                       A    G  V EG    +    L   +F  +L 
Sbjct: 87  GFIQSATSSGGVSPTLGALAAPESLLTVAGGSLGGIVGEGVSIPIGDSTLTLPAFGVILK 146

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------------------ST 302
            LE ++    L+ P +     + AS   G +  ++  +S                    +
Sbjct: 147 WLETSSTANILSTPHILTTDNEEASIEVGQKIPFRRGTSIPAAAGALGGLGGGSLGGLGS 206

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
             +S    D  + L  TP V    ++ L I  ++ +      A   P    R A T V +
Sbjct: 207 LFSSTDRIDVSLKLTLTPHVNERNKVRLDIDQQIEDVAGIDEATGQPITAKRSAKTVVVV 266

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               TIVL GL++D + + +  IP+L  +P++G +FR    + E+  + +  TP++V+
Sbjct: 267 DDQQTIVLGGLIRDRVSEGESKIPVLGDLPLIGWMFRQHTKDVEKVNLLLVLTPYVVR 324


>gi|332295419|ref|YP_004437342.1| type II and III secretion system protein [Thermodesulfobium
           narugense DSM 14796]
 gi|332178522|gb|AEE14211.1| type II and III secretion system protein [Thermodesulfobium
           narugense DSM 14796]
          Length = 630

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 100/233 (42%), Gaps = 12/233 (5%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ ++V + E+    +KQ+G Q       SG +       G +        S       
Sbjct: 402 KQIEVQVMVIELDNQGIKQLGIQWPNNIQFSGNAT------GTRTYGTSKSKSSVYTGTI 455

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---SVTTH 310
            +    L+A       + L++P + A+ GQ +   +G +     VSS+TG     +   +
Sbjct: 456 SNITASLYAQLNNNNAKILSDPRILALDGQDSYVFAGDKLYIPQVSSATGGNVTYTTNEY 515

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           D GV+L  TP +   G I + +   VS     V  +      +  +R+AD T  +  G T
Sbjct: 516 DVGVLLKITPFIGENGEITIHVTPSVSAFNGDVTQLQINQPFTTTIREADVTARVKDGQT 575

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             + GL+ D+ ++    +P L  +P+LG +FR     +  TE+    TP +VK
Sbjct: 576 FYIGGLISDEQRKQTISVPGLGNMPLLGPMFRYDYNMKSRTEVIFLLTPHIVK 628


>gi|226944981|ref|YP_002800054.1| type II and III secretion system protein [Azotobacter vinelandii
           DJ]
 gi|226719908|gb|ACO79079.1| type II and III secretion system protein [Azotobacter vinelandii
           DJ]
          Length = 614

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 113/278 (40%), Gaps = 17/278 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            +V L++ + EV R  +  +G Q   T        + A    G+      D         
Sbjct: 334 PEVVLELEVMEVSRKRILDLGLQWPNTFGILAEDGTSAVSILGQLRGIDSD------RIN 387

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SV 307
           FS    L      + + TLA P L   + + A    G +    + +S+          ++
Sbjct: 388 FSPSPTLKINANDSDVNTLASPVLRVSNREQARIHIGERVPVVSATSTPSTQGPVITENI 447

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPS-YRVRKADTTVELPS 364
           T  D G+ L   PT+     + +++  EVS         AG +P     R A TT+ L +
Sbjct: 448 TYLDVGLKLEVEPTIHLNDEVAIKVGLEVSNATQLTRTEAGTIPIQVDTRNAVTTLRLRN 507

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T VLAGL+++D  +  + IP L  IP +G LF +++    ++E+ ++ TP +V+ +  
Sbjct: 508 GETQVLAGLMRNDQGKSGDRIPGLGDIPGIGRLFGSNKDTLSKSELVLSITPRIVRNLPY 567

Query: 425 RDLSRPDDHYSVEDDAKA--FFFNRVNKIYGPKEASEV 460
           ++    +     E   +       R        +ASE 
Sbjct: 568 QNPYDMEFESGTESSLRLRPAALPRKAGAALRGQASEP 605


>gi|83858602|ref|ZP_00952124.1| general secretion proteinD [Oceanicaulis alexandrii HTCC2633]
 gi|83853425|gb|EAP91277.1| general secretion proteinD [Oceanicaulis alexandrii HTCC2633]
          Length = 658

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 118/284 (41%), Gaps = 13/284 (4%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
             +D  +   +       +   +   S  + ++ LL+     QV+++  I  V      +
Sbjct: 360 NDEDRLQISAVPSQNKIIARGPEARISEVRDLVELLDQP-RAQVSIEAAIISVSLQDEFR 418

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
            G       S       FA +  G   S    FS   +      E  L+ L+  T I  +
Sbjct: 419 FGVNWGAAPSEQ-IDVRFADNADGTAASVFPGFSATYL--NTDIEATLNMLDAVTEIEVI 475

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSP 325
           + P + A+  Q A    G Q    T S+ +               D GV+L  TP V + 
Sbjct: 476 SRPNVMALHNQQAELQVGDQVPVITQSAVSVTNPDAPIVNQTAYRDTGVILSVTPHVRAG 535

Query: 326 GRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           G + + I  EVS  V   ++G D P+ R R+  +T+ +PSG ++ L GL+       + G
Sbjct: 536 GIVEIDITQEVSSVVQTSSSGIDSPTIRQRRITSTLLVPSGQSVALGGLIATTRTTNERG 595

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDL 427
           +P+L ++P++G +F +   + + TE+ I   P ++  P    D+
Sbjct: 596 VPVLRELPVVGRVFGSDSESVDRTELVILLKPTVITDPSQPSDV 639


>gi|283955079|ref|ZP_06372582.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793446|gb|EFC32212.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 470

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 119/299 (39%), Gaps = 18/299 (6%)

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           V+L       +     +  +   +  +G N    S  K  +  L    + QV + V+I  
Sbjct: 165 VLLKNSHEDYEAKTPIINSNAGIIIVTGTNSQLKSV-KNYLQKLENRLKKQVIIDVSILA 223

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V  +     G       +    S++   +   +  +  G     G+    +F+++++ L 
Sbjct: 224 VSLNENHSSGINWQ-NFNIGLNSQANNENSFIQLQNGQGFVKNLGLRANLNFDSIVNFLS 282

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---------HDYGVV 315
           +      L+ P L A++ Q A  + G    Y+   SS G  + TT            G++
Sbjct: 283 QNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESYNNYSIFVGIL 342

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-------GDMPSYRVRKADTTVELPSGGTI 368
           L+  P +   G+I LRI   +S+     +           P    +K  + V++ +  T+
Sbjct: 343 LNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTL 402

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +L GL+  D    K  I  LSKIPILG+LF+    + + TEI    TP +V       L
Sbjct: 403 ILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLDSKATEIVFIITPSIVDSTNAPSL 461


>gi|192358819|ref|YP_001982858.1| MSHA biogenesis protein MshL [Cellvibrio japonicus Ueda107]
 gi|190684984|gb|ACE82662.1| MSHA biogenesis protein MshL [Cellvibrio japonicus Ueda107]
          Length = 578

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 109/288 (37%), Gaps = 43/288 (14%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------PS 227
           SS +  +    ++ + QV L+  I EVR     + G          G            S
Sbjct: 269 SSVRDYLERSELSAKRQVILETKILEVRLSEGFEAGVNWGAISGQLGYSYGSGRGTISAS 328

Query: 228 KSFAADFGGKF------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
            S   ++G  F               GG     G++       +L  LE   A++ L+ P
Sbjct: 329 DSLEMNYGPGFQMTDATRTITESSEYGGKDLFAGLVQVADITKLLSLLETQGAVQVLSSP 388

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLS 324
            ++ ++ Q A    G    + T  SS   T+           ++    G+ L  TP +  
Sbjct: 389 RVSTVNNQKAVIRVGYDEYFVTGISSNTTTNAAAITNTPNIELSPFFSGISLDVTPQISE 448

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLK 375
            G + L I   VSE    +    +             +R++D+ V+  +G  IVL GL+ 
Sbjct: 449 AGEVILHIHPIVSEVTDQLKVFTVGDENFSLPLALRGIRESDSIVKAANGQVIVLGGLMT 508

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +  +Q     PLL  IPI+ +LFR    ++ +TE+ I   P +V    
Sbjct: 509 ESNRQTDGKRPLLGDIPIVNSLFRTKNKSKSKTELVILLRPIVVDDTT 556


>gi|313680282|ref|YP_004058021.1| type II and III secretion system protein [Oceanithermus profundus
           DSM 14977]
 gi|313152997|gb|ADR36848.1| type II and III secretion system protein [Oceanithermus profundus
           DSM 14977]
          Length = 518

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 136/303 (44%), Gaps = 12/303 (3%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           L   ++   A S I+VE  +    +   +          +     L  +G  +      +
Sbjct: 220 LAEAMQARQAQSQIKVEAGAGEQQVQATIPEKSTISIVADTRTNTLIVTGTAKQL-ELVE 278

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  L+     QV ++V I EV + +++ +G + +    S G   S   D G   +   
Sbjct: 279 ELIKKLDFP-VQQVNVQVRIQEVTQTLVRNLGLKWNTI--SGGNIVSSIVDNGLSLI--- 332

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F     L   +    L ALE+    RT+ +  +T ++ Q+    SG     K V    
Sbjct: 333 --FDATRSLASLNIVATLEALEKQGLSRTVNDSNITVLNNQTGFIQSGFTIFVKRVVGD- 389

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVE 361
                  +D GV++  TP + + G+I L++++EVS+        GD+     +K++TT+ 
Sbjct: 390 -KVEKVPYDIGVIVRVTPQITADGQIVLKVESEVSDIKERNPVDGDVDVLSKQKSETTLR 448

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L +G T+VL GL+K    +  +G+P+L  IP+LG+LF+ +  N E+ E+ I  T  +V  
Sbjct: 449 LDNGQTVVLGGLIKTKRDKTTQGVPVLMHIPVLGSLFKQTTVNNEDNELLIVITANIVND 508

Query: 422 VAM 424
              
Sbjct: 509 ATA 511


>gi|307626976|gb|ADN71280.1| general secretion pathway protein D [Escherichia coli UM146]
          Length = 421

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 12/245 (4%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +N +++A  DQV ++  + E        + F                +  G    + GG 
Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298
           F   G+ D       L A++  +  + ++ P +   SGQ+   + G    + T       
Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGES 297

Query: 299 -SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
              +    ++  HD GV L  TP V+  G++ L I T          A D+ +   R+  
Sbjct: 298 AGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDIIT-NQRQIQ 356

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTV++  G T++L GL+       +  +P++SKIP++G +F +   + E+  ++I  T  
Sbjct: 357 TTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKAXSNEQRIMYILLTAH 416

Query: 418 LVKPV 422
           +++P+
Sbjct: 417 IIRPL 421


>gi|303248632|ref|ZP_07334887.1| type II and III secretion system protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489982|gb|EFL49906.1| type II and III secretion system protein [Desulfovibrio
           fructosovorans JJ]
          Length = 629

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 110/305 (36%), Gaps = 24/305 (7%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D   A  L   +      + +  S +++     ++   +        A     +    
Sbjct: 313 QTDRNTAQALGVQWGGVLKGSNFRMSPAQQATTSTSMTAGNNGMTSANAASSGSTLTGSG 372

Query: 214 GFQHSITGSSS--------GPSKSFAADFGGKFVSEGGDFS--------------VKGVL 251
              ++ TGSSS         P  S    FG  + +     +              + G +
Sbjct: 373 SVSNANTGSSSLSNVTSPIFPGGSSGNGFGLNYPALTNSLTTASGLGAAGAGVNFLFGKI 432

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                E  L AL     ++ LA PT+T +  Q+A   +G    Y   S+S   T+V   +
Sbjct: 433 GENVLEAQLTALAEDNKVKILASPTITTMENQTAFVENGMDVPY--TSTSQNGTNVQFAN 490

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
             + L   P V+    + ++I  +  +          P    R+  + + +    TIV++
Sbjct: 491 ATLRLEILPHVVDGTNLRMKITVKDDQVDTSRTVDGNPYIYKRETQSNLVVEDRETIVIS 550

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL++D +     G+P L  IP LG  F++   + E  ++ I  TP ++K   +  +    
Sbjct: 551 GLVRDTVSDGNSGVPFLRDIPGLGWAFKSKNSSVEREQMLIFITPIILKEKPIAPVPPVA 610

Query: 432 DHYSV 436
           D    
Sbjct: 611 DRVDP 615


>gi|218886129|ref|YP_002435450.1| type II and III secretion system protein [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757083|gb|ACL07982.1| type II and III secretion system protein [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 552

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 102/264 (38%), Gaps = 40/264 (15%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS------------------------------------ 218
           Q+ LK  I E  ++  +++G Q                                      
Sbjct: 255 QIQLKAHIVEATKETARELGIQWGGVNRVGNMAGSNDLWVTPGGTGGTAGTSPYNGSYTP 314

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEP 275
           I G+     +    +F      + G  S+    G +     E  L AL+ ++ I  L+ P
Sbjct: 315 IFGAPGISGQGNGINFPIDTTGKSGAGSLGLMFGTIGGNMLEMQLSALQESSKINILSSP 374

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +++ +  Q A   +G +  Y   +++ G   V   D  + L  TP V+    + L++  +
Sbjct: 375 SISTLDNQMAYTENGEKVPY-VSTNAQGDREVKFEDAVLRLEITPHVIDDKNLKLKVLVK 433

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             E  +       P    ++ +TT+ +  G TIV++GL KD     + G+P L  +  LG
Sbjct: 434 KDEVDLTRTVEGNPFIIKKQTETTLIVQDGETIVISGLTKDRKSTGRSGVPGLHDVEGLG 493

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LF +     +  E+ I  TP ++
Sbjct: 494 WLFGSDSKASKLEEVLIFITPAVL 517


>gi|93006993|ref|YP_581430.1| type II and III secretion system protein [Psychrobacter
           cryohalolentis K5]
 gi|92394671|gb|ABE75946.1| type II and III secretion system protein [Psychrobacter
           cryohalolentis K5]
          Length = 792

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 106/282 (37%), Gaps = 44/282 (15%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           K++  ++I    QV ++  I        K+IG +  I  + +  +++       + + + 
Sbjct: 514 KLIGKIDIP-VRQVMIEARIVSATDSFSKEIGVRWGILSNGAANNRNLLVGGSNQTLWDL 572

Query: 243 GDFSVKGV---------------------------------------LDRFSFETVLHAL 263
            DF V+                                         +  F  +  L A+
Sbjct: 573 KDFDVQTTTINGQTVSYPKYDITRPDNLNVDLGVDNPAGRIAFGLLGISDFMLDLELSAM 632

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +       ++ P +     Q+A  +SG Q  Y+  S+S GAT+ +  +  + L  TP + 
Sbjct: 633 QADNRGEVISTPKILTSDKQTAKVSSGTQIPYQEASAS-GATTTSFKEAALSLEATPNIT 691

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             G+IGL++      P I     +  +       T V +  G TIVL G+ K+      +
Sbjct: 692 PDGKIGLQLLITNGTPTI---INNQVAIAEDSISTNVIVEDGQTIVLGGVFKNRTNNGVD 748

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            +P L  +P +G  FR    +  + E+ I  TP L+     R
Sbjct: 749 KVPFLGDLPYIGRAFRKDVRSNTKEELLIFITPKLINDGISR 790


>gi|103485810|ref|YP_615371.1| type II and III secretion system protein [Sphingopyxis alaskensis
           RB2256]
 gi|98975887|gb|ABF52038.1| type II and III secretion system protein [Sphingopyxis alaskensis
           RB2256]
          Length = 732

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 119/317 (37%), Gaps = 55/317 (17%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTIAEVRRDILKQIGF 215
           R   +   +   +     ANS  ++++  L     A   QV ++  + E+  D  K++G 
Sbjct: 326 RGPAIVTRYEGANAIIVAANSEVQRMLGELIRQLDARRQQVLVEAIVVEIGDDAAKRLGV 385

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDF------------------------------ 245
           Q  + G +     +  ++     ++ GG +                              
Sbjct: 386 QFLLGGKNIPFVATSYSNASPNILTLGGAYASTRISEETTTTDGTTVVTQTTSALGDALQ 445

Query: 246 --------SVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                   S  G    F+        F  +++A++  T    LA P +  +  Q A F  
Sbjct: 446 EAAAAQLLSATGGFAGFAGDIGKNTIFGAIINAVKSDTTSNLLATPHIVTLDNQPAKFLV 505

Query: 290 GGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           G      T             +V   + G+ L  TP V   G + + ++ EVS     V+
Sbjct: 506 GQDVPITTGEQLGDNFENAFRTVQREEVGIKLEVTPQVNGAGEVKMFLRQEVSSVAGPVS 565

Query: 345 AGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           + +       R  +T + +  G  + + GLL DD ++  E IPLLS IP++G LF++   
Sbjct: 566 SRNSDLILNKRAFETVLTVDDGEILAIGGLLNDDERRTIERIPLLSDIPLIGELFKSRSR 625

Query: 404 NREETEIFIAATPFLVK 420
            R +T + +   P ++K
Sbjct: 626 TRAKTNLMVFIRPTILK 642


>gi|88704159|ref|ZP_01101873.1| General secretion (type II) pathway protein D precursor
           [Congregibacter litoralis KT71]
 gi|88701210|gb|EAQ98315.1| General secretion (type II) pathway protein D precursor
           [Congregibacter litoralis KT71]
          Length = 745

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 107/270 (39%), Gaps = 6/270 (2%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +     R V   E        +       K  +  L++    QV ++ +I EV+     +
Sbjct: 439 SPLADVRVVADEENNALMIYADGKQYGIVKDALKQLDVV-ATQVIIEASIMEVQLIDELR 497

Query: 213 IGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
            G + +   G  +          G    +    FS            VL+AL   + I  
Sbjct: 498 YGLEWTFKNGLGNNYDGLGTLAAGAAGPAAAAGFSYTVTNSLGDISAVLNALSEESLINV 557

Query: 272 LAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           ++ P++  +   +A  + G Q          +      ++T  D GV L   P+V + G 
Sbjct: 558 ISSPSVMVLDNHTAFISVGDQVPVLQGQTITNGGNSVQNITYRDTGVQLSVRPSVNAGGL 617

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + + I+  V +     +A    ++  R  ++ V + S  ++VL GL++++      G+P+
Sbjct: 618 VTMDIEQSVIDVGSIDSATGQRAFLDRTINSRVAVRSSESVVLGGLIRENSSLGDSGVPI 677

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPF 417
           L +IP+ G+LF  +  +   TE+ +  TP 
Sbjct: 678 LREIPLFGSLFGTTTTDSRRTELLVIITPR 707


>gi|57238497|ref|YP_179628.1| general secretory pathway protein D [Campylobacter jejuni RM1221]
 gi|57167301|gb|AAW36080.1| general secretory pathway protein D [Campylobacter jejuni RM1221]
          Length = 470

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 17/264 (6%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S K  +  L    + QV + V+I  V  +     G       +    S+    +   +F 
Sbjct: 199 SVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQ-NFNIGLNSQVNNENSFIQFQ 257

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   
Sbjct: 258 NGQGFVKNLGLRVNLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 317

Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345
           SS G  + TT            G++L+  P +   G+I LRI   +S+     +      
Sbjct: 318 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE 377

Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+    
Sbjct: 378 PRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVL 437

Query: 404 NREETEIFIAATPFLVKPVAMRDL 427
           N + TEI    TP +V  V    L
Sbjct: 438 NSKATEIVFIITPSIVDSVNAPSL 461


>gi|153870600|ref|ZP_01999967.1| MSHA biogenesis protein MshL [Beggiatoa sp. PS]
 gi|152072935|gb|EDN70034.1| MSHA biogenesis protein MshL [Beggiatoa sp. PS]
          Length = 494

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 24/243 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           + QV ++ TIAEV+ +   Q G     I G  +        + G       G  +V   L
Sbjct: 249 QRQVLIEATIAEVQLNDQYQAGIDWQRIDGDFNYTQALTGGNLGNAPFYSFGYSNVASRL 308

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------- 304
              +    +  LE+  +++ L+ P + A++ Q+A        +Y T              
Sbjct: 309 G--NISATVRLLEQFGSVKVLSSPKIMALNNQTAILKVVDNIIYFTTEVEITETDTRTRE 366

Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-----------GVNAGDMPS 350
              T + T   G+V+  TP +     + L I+  +S  +                  +P 
Sbjct: 367 TFETEINTVPVGLVMSVTPQISENNVVMLNIRPTISRIINFKVDPNPALAAAGTVNQIPE 426

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            +VR+ +T +++  G   V+ GL++D   Q+K+G+P+LS++P++G  F       E+TE+
Sbjct: 427 IQVREIETILKINHGDIGVIGGLMQDTTNQIKKGVPVLSQLPLVGDFFSYRDDQYEKTEL 486

Query: 411 FIA 413
            I 
Sbjct: 487 VIF 489


>gi|307719942|ref|YP_003891082.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978035|gb|ADN08070.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 502

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 117/266 (43%), Gaps = 27/266 (10%)

Query: 178 NSSSKKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
             +   + NL+    +    QV ++  I EV  +   Q+G    + G S         D 
Sbjct: 241 KQNIDAISNLIKDVKKQFNKQVLIEAKILEVTLNKSHQLGINWDVVGKSVFS----PGDT 296

Query: 235 GGKFVSEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                S G   +V G ++    +F  +++A+++   I T++ P +  ++GQSA  +SG  
Sbjct: 297 LNIQQSLGLTGAVAGTVNYSANNFNALINAIDQNGNIDTISNPRIKVLNGQSAIISSGKL 356

Query: 293 HLY--------KTVSSSTGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQT-------- 334
             Y        +  S++    +    D   GV +  TPTV+  GRI L +          
Sbjct: 357 VPYWEKQVDTSQGTSTNNILVTYNRRDVLDGVTMGVTPTVMENGRIMLNVTPISSSIESE 416

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +V     GV+    P   +++A T +   +   +++ GL+   I++ K+ +P LS +P++
Sbjct: 417 KVYHDDQGVSVATAPIINIKEAGTIIYAKNNDLVLIGGLMSTSIKKNKQEVPFLSNLPLV 476

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G+LF      +E+ E+ I     +++
Sbjct: 477 GSLFTQVNNTKEKKELVILLRLKVIE 502


>gi|309389153|gb|ADO77033.1| type II and III secretion system protein [Halanaerobium praevalens
           DSM 2228]
          Length = 438

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 20/241 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            +++  ++   + Q+ +K  + E+ R  +K++G           PS+           +E
Sbjct: 164 DQIVKKIDQP-QKQIMIKARVEEISRTEIKELGIN---------PSQLTELKI---IKNE 210

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VS 299
            GD        + ++   L +L        LA P+L  +  + A    G Q   K   V 
Sbjct: 211 AGDLEEL----KPNWPDTLRSLNERGLSNILANPSLMTLDRKKAKLIIGDQIPVKLERVE 266

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           S    +++   + G+VL F P +++   + L I+  V+  +  V A  +P+   R A+TT
Sbjct: 267 SEKTVSTINYIEAGIVLEFLPKIINEKEVLLEIKPSVNS-LGQVLADGLPAVNSRSAETT 325

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V L +  T+ + GL+K D  +  + +P+L+ +P+LG LF     N  ETE+ I  TP ++
Sbjct: 326 VILENDQTLAIGGLIKKDELKSIKEVPILADLPLLGKLFSAEEKNDIETELIIFITPKII 385

Query: 420 K 420
           +
Sbjct: 386 E 386


>gi|148252838|ref|YP_001237423.1| general secretion pathway protein D [Bradyrhizobium sp. BTAi1]
 gi|146405011|gb|ABQ33517.1| General secretion pathway protein D [Bradyrhizobium sp. BTAi1]
          Length = 751

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 125/311 (40%), Gaps = 31/311 (9%)

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHS 218
           V ++   ++ S        S + + + L    +   QV +  TIAEV        G Q  
Sbjct: 435 VRITPDTVNNSLLIYADRESYRTISSTLQQLDQPVLQVGIDATIAEVTLTNELSYGVQAY 494

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFS-------VKGVLDRFSF--------ETVLHAL 263
           ++    G      +    +  S     +       +   L  F+F          +L AL
Sbjct: 495 LSSKVLGLGTDKGSITNTQTTSVATATTAAATSALINRALPGFNFLIGHEASPNMILDAL 554

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLH 317
              T+++ L+ P+L  I+ Q+A+   G      T S      S+T   ++   + G++L 
Sbjct: 555 HTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGSATVLSSSNTVVNTIDYRNTGIILR 614

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P + + G + L ++ E+S       A   P+   RK  + + + +G T++LAGL+ + 
Sbjct: 615 VVPRIAANGNVRLEVEQEISNVAAQSAASLTPTVSQRKVKSAISVANGQTVLLAGLISEQ 674

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
               + GIP   +IPILG  F +       TE+ I   P +++  +        D + V 
Sbjct: 675 QNGNRNGIPGFDEIPILGDTFSHQDKKGTRTELIIFIRPQIIRDGS--------DAHQVA 726

Query: 438 DDAKAFFFNRV 448
           ++ ++     V
Sbjct: 727 EELRSKLRGSV 737


>gi|42524677|ref|NP_970057.1| flp pilus assembly protein [Bdellovibrio bacteriovorus HD100]
 gi|39576887|emb|CAE78116.1| flp pilus assembly protein [Bdellovibrio bacteriovorus HD100]
          Length = 433

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 149/402 (37%), Gaps = 39/402 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + +GL +   + +      V + D           R + L G+  G   V +    G  +
Sbjct: 21  LVLGLGEQKTVPLQGQ-DRVWIQDREILTAEGQGGR-LLLVGRREGFTTVKV----GAVL 74

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD----SQRAVELSE 165
            ++ +L        +           +   +    +++ G +  +QD    +      + 
Sbjct: 75  YSVQVLHPSKKDSFQDLTTYLKTRVGLHASLKEGDLLIEGQLYRLQDWIHLADHMRTKNL 134

Query: 166 TFLSQSGRNQYANSSSKKVMNLL--NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
            +  ++         +++  + L        Q  +     EVR     Q   ++S     
Sbjct: 135 NYQMRARMTASLQQLAQEHFSNLFYKAHLPPQTLIFEPALEVRVSGTDQTFRKYSRLLMP 194

Query: 224 SGPS------------------------KSFAADFGGKFVSE-GGDFSVKGVLDRFSFET 258
            G S                        K F+  +G +  +         GV +R     
Sbjct: 195 FGVSLLKDETSLDIAPTIKVQITVAEIKKDFSLKYGLRPPAGYSAKLMPDGVWERDELPF 254

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            L ALE     + LA P +   SG+ A F +GG+   K ++       +    YG++L  
Sbjct: 255 NLTALEAQGQGKILASPNILCRSGKEAEFLAGGEFPIKIMNYKM--QDIVWKRYGILLRV 312

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            P   + GR+ + I+TEVS         D+P     +  +  +L    TI L+GLLK + 
Sbjct: 313 KPKADAAGRMSISIETEVSTVDDSRKVDDVPGILTNRVSSHFDLTRPQTIALSGLLKSED 372

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  EG+PLLS++P++GALF +  F    +E+ I   P +++
Sbjct: 373 GKSSEGLPLLSRLPVVGALFASKDFKENRSELVIFVRPSILR 414


>gi|254522174|ref|ZP_05134229.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14]
 gi|219719765|gb|EED38290.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14]
          Length = 638

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 109/287 (37%), Gaps = 12/287 (4%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI-----AGEDQVTLKV 200
           V+   V  +    R V  ++TF  + G     + S   V    ++       + Q     
Sbjct: 347 VIDRPVDQVLIESRIVIATDTFARELGAKFGISGSRDNVYFSGDLESNRKTRQSQADTSA 406

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
             A+  RD         +        ++    +      +  G  ++  +   +  +  L
Sbjct: 407 ANAKAYRDWEAGGSVGPAPVPLLPAITRGLNFNLPAASTATPGSLALSILNAGYLLDVEL 466

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVL 316
            A++       ++ P +   + + A    G +  Y T+S          +V   +  + L
Sbjct: 467 SAMQEEARGEVISNPRVVTTNQREALIKQGKEIGYVTISGGGTGGVATPNVQFKEVVLEL 526

Query: 317 HFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
             TPT+ +  R+ L +Q +  E    +     G +P    R+ +T V +  G T+V+ G+
Sbjct: 527 KVTPTITNDNRVFLNMQLKKDEVERLIQLQGYGTVPEINRREVNTAVLVDDGQTVVIGGV 586

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +   +     +P L  +P LG LF+    ++++ E+ +  TP +++
Sbjct: 587 YEFTDRSSVSKVPFLGDVPFLGNLFKKRGRSKDKAELLVFVTPKVLR 633


>gi|88797633|ref|ZP_01113222.1| type 4 fimbrial biogenesis protein PilQ [Reinekea sp. MED297]
 gi|88779805|gb|EAR10991.1| type 4 fimbrial biogenesis protein PilQ [Reinekea sp. MED297]
          Length = 709

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 96/254 (37%), Gaps = 37/254 (14%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS------------------------ITGSSSGPSKS 229
           +QV ++  I   R  +  Q+G +                          I G S  P  +
Sbjct: 460 EQVLIEARIVSARTSVGDQLGVRWGGAIFPSQNVFATGTVESSASIESDIYGGSPNPDLT 519

Query: 230 FAADFGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           F   F     + G   S    L   +    +  + ALE       +++P +    GQ+AS
Sbjct: 520 FPDAFAVNLPATGNASSFAVGLIADNLLDLDLEISALESLGEAEVVSQPKIVTSDGQAAS 579

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
             SG    +      T        + G+ L+ TP V    ++ L +         G  A 
Sbjct: 580 IFSGQNVAFPAEDGGT-----QFIEAGLNLNVTPQVTPDDKVILTLTVNQDSLAAGGGA- 633

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
                      T V + +G T+VL G+ + +  QL E  P+L  +P++G LF+ +  + E
Sbjct: 634 ----IDTNTVSTQVLVENGVTLVLGGVYRTEKTQLVEKAPILGDLPVVGNLFKRTTTSDE 689

Query: 407 ETEIFIAATPFLVK 420
            +E+ I  TP L++
Sbjct: 690 RSELLIFITPKLIQ 703


>gi|205356095|ref|ZP_03222862.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|205345938|gb|EDZ32574.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni CG8421]
          Length = 470

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 108/265 (40%), Gaps = 19/265 (7%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S K  +  L    + QV + V+I  V  +     G        + G +     +      
Sbjct: 199 SVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINW--QNFNIGLNSQVNNENSFIQF 256

Query: 240 SEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
             G  F    G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+  
Sbjct: 257 QNGQSFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVK 316

Query: 299 SSSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---- 345
            SS G  + TT            G++L+  P +   G+I LRI   +S+     +     
Sbjct: 317 ESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQK 376

Query: 346 ---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                 P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG+LF+   
Sbjct: 377 EPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEV 436

Query: 403 FNREETEIFIAATPFLVKPVAMRDL 427
            N + TEI    TP +V  V    L
Sbjct: 437 LNSKATEIVFIITPSIVDSVNAPSL 461


>gi|149376650|ref|ZP_01894409.1| Type II secretory pathway, component PulD [Marinobacter algicola
           DG893]
 gi|149359023|gb|EDM47488.1| Type II secretory pathway, component PulD [Marinobacter algicola
           DG893]
          Length = 578

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 116/288 (40%), Gaps = 35/288 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADF 234
           ++ +    +  + QV L+  I E+  +   Q G          S+T S   P    A   
Sbjct: 273 EEYLRRTQLIMQRQVVLEAKILEIGLNEGYQQGINWADIQSASSVTASDGLPEDFTAQAL 332

Query: 235 GGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            G+ ++    GG FS    +    F  ++  L     ++ L+ P ++ ++ Q A    G 
Sbjct: 333 AGQVITTSDIGGLFSAS--VRAGDFTGLIELLGEQGNVQILSSPRISTVNNQKAVIKVGT 390

Query: 292 QHLYKT-----------VSSSTGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSE 338
              + T            ++   +TSV    +  G+ L  TP +   G I L +   VSE
Sbjct: 391 DEFFVTDIDFDDNNSAVTATDRTSTSVELTPFFSGISLDVTPQISEDGAITLHVHPSVSE 450

Query: 339 P-------VIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                    +G     +P     VR+ D+ +   SG  +V+ GL+++  +     +P  S
Sbjct: 451 VNDQKKVITVGDRDVTLPLALSTVRETDSVIRAESGQIVVIGGLIQNTSEDNNSAVPFFS 510

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSV 436
           +IP+LG LF+  RF   ++E+ I   P +     M  D+S   D   V
Sbjct: 511 EIPLLGELFKQRRFQSRKSELVILLRPVVAGSQQMNADVSASRDRMRV 558


>gi|251772573|gb|EES53138.1| putative general secretion pathway protein D [Leptospirillum
           ferrodiazotrophum]
          Length = 565

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 9/190 (4%)

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           V  GG F   GV +  +   +L+ALE  + +RTL+ P + A  G  A  T G    + T 
Sbjct: 320 VLTGGTFKYNGV-NYPNIGELLNALETYSDVRTLSTPEILATDGVKAKITIGEDVPFITG 378

Query: 299 SSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PS 350
            S T      T +   + G+ L  TP +LS  R+ L ++  +S               P+
Sbjct: 379 QSQTVGGNVMTMIQRQNVGITLELTPHILSHNRVRLDVKQTISALTNASQVIGTIAVGPT 438

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R A T + + SG T+V+ GL+  +     +GIP LS IPILG LF N+   ++  ++
Sbjct: 439 TTKRSAKTNLTISSGQTVVIGGLISKETSINDQGIPFLSDIPILGYLFSNTNNEKKRDDL 498

Query: 411 FIAATPFLVK 420
            I  TP++++
Sbjct: 499 LIFLTPYVIR 508


>gi|297537339|ref|YP_003673108.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
 gi|297256686|gb|ADI28531.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
          Length = 608

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 119/293 (40%), Gaps = 34/293 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----AADFGGK 237
           ++ ++ +  + + QV ++ TI EV  +   + G   S  GS       F        G  
Sbjct: 303 QEFIDKVMGSAKKQVLIEATIVEVTLNDGYKAGIDWSRLGSLGSAGFVFKQALGPQLGAV 362

Query: 238 FVSEGGDFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
             +     S  G++  ++       + +  LE+    + L+ P L  ++ Q+A       
Sbjct: 363 NSAANVTLSSSGIIAGYTNGNRGILSSVQLLEQFGNTKVLSSPKLMVLNNQTAVLKVVDN 422

Query: 293 HLYKTVSSS--------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS- 337
            +Y TV S               +  T+  T   GVV+  TP +   G + + ++  ++ 
Sbjct: 423 LVYFTVQSQISQSASGVAGTNLQSVTTTPNTVPVGVVMSVTPQINDTGNVNINVRPTITS 482

Query: 338 ----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
                     +     +   +P  R R+ ++ +++ SG   VL GL++D+I+   E +P 
Sbjct: 483 LIRYVPDPNPQIQKSPDFQGIPEIRTREMESLLQISSGNIAVLGGLMQDEIKNSTEAVPG 542

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           LSK+P +G +F+    + ++TE+ I   P ++   ++           +   A
Sbjct: 543 LSKVPGVGKVFQGKNDSNQKTELVIFLRPTVIPNASLESDELAHYKQYLPTQA 595


>gi|325295622|ref|YP_004282136.1| type II and III secretion system protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066070|gb|ADY74077.1| type II and III secretion system protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 506

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 113/267 (42%), Gaps = 32/267 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--GPSKSFAADFGGKFV 239
           K+ ++ +N   + QV ++  I EV+ D   ++G        S+  G    +         
Sbjct: 238 KEFIDTINGISDRQVLIEAKIVEVKLDKRNELGINWKYLTFSNFLGSGGEYNTISFNSGA 297

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----- 294
            EG  F +  V    +F  +L  L +   +  L+ P + A++GQ A    G  +L     
Sbjct: 298 PEGKPFQLSIVKVNNTFSGLLGILSQFGKVNVLSSPRILAMNGQPAMIKVGRDYLAIYRT 357

Query: 295 -------------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--- 338
                            +      S+ T   GVVL   P +   G I L I   +S    
Sbjct: 358 QTTSTTSTSSQTATTLTTEEVTTNSILTE--GVVLTIIPKIDDKGNIILNISPAISSLDS 415

Query: 339 PVIGVNAGDMPSY-------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           P+I  + G+   +        +R+ +T V + +G T++L GL+     + KEG+P+L  I
Sbjct: 416 PLITGSTGETTDFINKVYSVNIRQLNTVVRVKNGQTVILGGLIAKSKSKEKEGVPILQDI 475

Query: 392 PILGALFRNSRFNREETEIFIAATPFL 418
           P+LG  F+++     +TE+ I  TP++
Sbjct: 476 PLLGNAFKSTSTISSKTELVIMLTPYV 502


>gi|298529582|ref|ZP_07016985.1| type IV pilus secretin PilQ [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511018|gb|EFI34921.1| type IV pilus secretin PilQ [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 569

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 13/241 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           ++++ L+   E QV ++  +        +++G        S G   +  +     F S+ 
Sbjct: 336 QLIDNLD-RPERQVLIEARVVYATESFRRELGVDWGFAYQSPGLDSNIISPDTFNFPSDL 394

Query: 243 GDFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                 G +          E  L   E      T++ P +  ++ Q A    G       
Sbjct: 395 EGLLGVGYMGHEGQSFSVLEARLRLGESQGKSNTISAPQIMTLNNQEAKIEQGTDVAVDV 454

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
           + +    T        + L  TP +     + L ++   + P  G N        V+KA+
Sbjct: 455 IDADL-RTRREYVPATLELIVTPQITPDNNLILNLEVSDNAPGEGGN------IEVKKAE 507

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TT+    G TIV+ G+ K    Q + GIP LS++PILG LF++        E+ I   P 
Sbjct: 508 TTLFAEDGETIVIGGIKKLSESQRETGIPPLSRLPILGWLFKHELVEENMDELLIFIRPK 567

Query: 418 L 418
           +
Sbjct: 568 I 568


>gi|288818586|ref|YP_003432934.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
 gi|288787986|dbj|BAI69733.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
 gi|308752177|gb|ADO45660.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
          Length = 665

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 26/292 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAADF 234
           K ++  +++    QV L  T+ E+       IG +  I G+  G S         + A  
Sbjct: 370 KSLIEKMDVR-RKQVLLAATVVEMSTSKALDIGVKWQIIGTQGGVSLGGGSLQDVYNAIL 428

Query: 235 GGKFV-----SEGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
            G F+     + G   ++ G  L       +   LE  +    ++ P +  +  Q+A   
Sbjct: 429 SGNFIMGVLSTAGRTVTIGGTQLFFPDLLLLFSLLESGSGFNIVSNPKVLTLDNQTAEIK 488

Query: 289 SGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVS--EP 339
            G    Y +      +     +    + G+ L  TPT+       +I L++Q  V    P
Sbjct: 489 VGQVVPYASGVKFDINGMPVITYDYKEVGLDLGVTPTISGKDLRLQINLKLQDIVDYIRP 548

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            IG  +  +P    R+ ++ V + +G TI++ GL+        +G+P L  IP LG +FR
Sbjct: 549 QIGTLSYAVPVTSNRQVNSDVVVENGQTIIIGGLVNTKTLTSTQGVPGLKDIPGLGRIFR 608

Query: 400 NSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
                 ++  +FI  TP+++ KP  + +++R   H  + ++ K     R  K
Sbjct: 609 RDTKTEDKVSLFIFLTPYVIEKPEELSEITR--QHQKMAEELKKLIEEREKK 658


>gi|157163858|ref|YP_001466818.1| PP family ATPase [Campylobacter concisus 13826]
 gi|157101371|gb|EAT98651.2| type II and III secretion system protein [Campylobacter concisus
           13826]
          Length = 508

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 116/270 (42%), Gaps = 31/270 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSSSGPSKSFAAD 233
           +K +  +    + QV + V+I  V  +   + G   S          G+    + S+A+ 
Sbjct: 217 EKYIAEMQRRLKKQVIIDVSIIAVDLNNEYKQGVDWSKFELGFNSYIGNPGSSTSSYASW 276

Query: 234 FG-GKFVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
              G  +S+G   ++    +  FS + +++ LE     + ++ P +T ++ Q A  + G 
Sbjct: 277 TNKGNSLSDGFGRTLNIAANLNFSLDGMINFLETNGKTKVVSSPKVTTLNNQQALISVGD 336

Query: 292 QHLYKTVSSSTGAT--------SVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEP 339
              Y+ +  +   +        + T   Y    G++L+  P V    +I LRI   +S  
Sbjct: 337 NINYRVMEETDNGSNNNNNNRLTTTYKQYSVFIGILLNLLPEVSDNNKIMLRINPSLSSF 396

Query: 340 VIGVNAGDMPSYRVRKA---------DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
               +     +  +R+           T V++ SG TI+L GL+     +    +PLL+ 
Sbjct: 397 KYAEDDTRSQNTAIREIAPDTVQKKLSTVVQVNSGDTIILGGLIGQTKDKQNTAVPLLAD 456

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP++G++F+++R     TE+    TP +V 
Sbjct: 457 IPLIGSVFKSTRDGVRTTELIFVITPRVVD 486


>gi|262273424|ref|ZP_06051238.1| type IV pilus biogenesis protein PilQ [Grimontia hollisae CIP
           101886]
 gi|262222402|gb|EEY73713.1| type IV pilus biogenesis protein PilQ [Grimontia hollisae CIP
           101886]
          Length = 578

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 103/270 (38%), Gaps = 34/270 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           K +++ L+I   DQV ++  I  V    L +IG +  +   +   +              
Sbjct: 309 KSLIDSLDIP-VDQVEIEARIVTVDEGTLDEIGVRWGLNSQNGNFTMGGSIEGNWQHSDR 367

Query: 230 -----------------FAADFGG-KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                               + G     +    FSV  +      +  L AL+  +    
Sbjct: 368 IDVGADNEPDELMLDDLLNVNLGAISPNATSIAFSVANLGKDLLLDLELSALQAESRAEI 427

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           ++ P L   + + A    G +  Y   SSS  A   +     + L  TP +    ++ L 
Sbjct: 428 ISSPRLLTTNKRPAYIEQGTELPYLEASSSGAAAV-SFKKAVLSLSVTPQITPDNKLVLD 486

Query: 332 IQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +Q    +P   V AG   +     ++  T V +  G T+VL G+ + ++ +  + IPLL 
Sbjct: 487 LQVTQDKPAGTVKAGTGEAMAINTQRIGTQVLVNDGETVVLGGIYQHEMMEGVDKIPLLG 546

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP LG LFR +     + E+ I  TP ++
Sbjct: 547 DIPGLGQLFRRNYETTGKRELLIFVTPRVM 576


>gi|258593213|emb|CBE69552.1| exported protein of unknown function [NC10 bacterium 'Dutch
           sediment']
          Length = 726

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 107/255 (41%), Gaps = 18/255 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADF 234
           +  +  L+I    QV +++ +A++          +         ++    GP+ +  A F
Sbjct: 425 EATIKQLDIV-PKQVLIELMLAQITLSDAFDFSLEQVLRSGTIMLSSVHGGPAAAAIAAF 483

Query: 235 -GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                V+    F+    +D+  F  VL+ L   T +  LA P L   + + A+   G + 
Sbjct: 484 KNPSGVAPPSGFTFTTFVDKEQFRLVLNNLASVTKVEVLANPHLLTANNKEANIQIGQEV 543

Query: 294 LYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
              T + S G +       +    D G++L   P V     + L I+TE +     V   
Sbjct: 544 PIPTGTQSVGTSDVANVFSTFQRKDIGIILKIKPHVNEKRLVTLDIETENTSVAGEVPDA 603

Query: 347 --DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
                S+      T + +    ++V+ G+++ D  +   GIP LS IP+LG LFRN+  +
Sbjct: 604 LQGGASFNKTTTKTALVVQDSQSLVIGGIIRTDKSKGYSGIPFLSTIPLLGYLFRNTSED 663

Query: 405 REETEIFIAATPFLV 419
              TE+ I  TP ++
Sbjct: 664 LIRTELVILITPHVI 678


>gi|154249944|ref|YP_001410769.1| type II and III secretion system protein [Fervidobacterium nodosum
            Rt17-B1]
 gi|154153880|gb|ABS61112.1| type II and III secretion system protein [Fervidobacterium nodosum
            Rt17-B1]
          Length = 1519

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 11/247 (4%)

Query: 185  MNLL--NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            +N L         V++   I +  R+          +   +     S         +   
Sbjct: 1269 INKLIEKFTTPKIVSIDARIIDESRNGSLSEEIVTLLKAGNYLTFGSNGLTLNVSLLDIL 1328

Query: 243  GDFSVKGVLDRFSFETVLHALER-------ATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                +  +L+       L   E+       +   + LA P +   SG+ A    G     
Sbjct: 1329 DGSIIDKILNEAGISLDLRGAEQGTPFRATSGIGKLLANPNIMTKSGEEARIFIGDSIPL 1388

Query: 296  KTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            K VS+S G T+  V + + G+ L   P V +   I L I T VS     V    +P    
Sbjct: 1389 KIVSTSGGQTNEQVISLEGGIELKIVPYVNADNTIDLVITTSVSNFDYSVLVNGLPKINK 1448

Query: 354  RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            R A T + +  G T+V+ GL +++  + +  +P+L  IPILG LFR ++   E+  I I 
Sbjct: 1449 RDASTKITIKDGQTLVIGGLSREEKSKSEWKVPILGDIPILGYLFRGTKEASEQRSITIF 1508

Query: 414  ATPFLVK 420
             T  +V 
Sbjct: 1509 LTAKIVD 1515


>gi|253996576|ref|YP_003048640.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
 gi|253983255|gb|ACT48113.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
          Length = 583

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 141/396 (35%), Gaps = 65/396 (16%)

Query: 88  YLFGKNVGQANVILI----------GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           Y+ G+  G +++ +              G         +  +I+       R    S+I 
Sbjct: 161 YIVGQRKGASDIRVTSGSISGGSQNNQQGANSTGATSQVSNNISG-GANNNRTFTSSSIN 219

Query: 138 VEMVSD-----TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
               +D     T  L+G+V      +  V L    +          +  +  +NL+ ++ 
Sbjct: 220 TTSNNDFWRDLTESLNGIVGNENGRRVIVNLQSGVIVVRAMPNEIRNV-ESFLNLMQVSI 278

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITG------------------SSSGPSKSFAADF 234
           E QV L+  I  V+ +   Q G   S+ G                  SSSG     + D 
Sbjct: 279 ERQVILEAKILNVQLNDQSQSGVNWSVFGRSGSNTGIVGNINANTRLSSSGNGNLVSGDL 338

Query: 235 G---GKFVSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
               G  +S     ++ G      L   +F T+L  LE    ++ L+ P +++I+ Q A 
Sbjct: 339 TASTGTVLSNAATTALGGPLFAIALQGANFSTLLSFLETQGDVQVLSSPRISSINNQKAV 398

Query: 287 FTSGGQHLYKTVSSSTGATSV-----------TTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
              G    + T  SS    SV                G+ L  TP +     I L +   
Sbjct: 399 LKVGTDEFFVTGISSNTTASVGATTTVPEVILQPFFSGITLDVTPQIDKDDNIILHMHPS 458

Query: 336 VSEPVI-------GVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +S+          G  AG +     S  + + D+ V    G  IV+ GL+ +     K  
Sbjct: 459 ISQVSTVNKQVTLGGTAGQINLPLASSNISETDSIVRTRDGRVIVIGGLMTESASSTKSK 518

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P L  +  +GA FR    ++ +TE+ I     +V+
Sbjct: 519 VPGLGDVKGVGAAFRQQSASKTKTELVILLKASVVQ 554


>gi|114797223|ref|YP_760566.1| general secretion pathway protein D [Hyphomonas neptunium ATCC
           15444]
 gi|114737397|gb|ABI75522.1| general secretion pathway protein D [Hyphomonas neptunium ATCC
           15444]
          Length = 653

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 103/282 (36%), Gaps = 39/282 (13%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFA----- 231
           + ++V+  L++    QV ++  I E+  D  +++G Q  + G+       S +F+     
Sbjct: 323 AMERVVTALDVRRP-QVMVEAIIVEMSDDAARELGLQFLLAGTGGDVPFASTNFSRAAPN 381

Query: 232 ------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                   A       S G      G      F  +L+A+E  T
Sbjct: 382 LLALTGALVTDAFEDPAAENPFREAAISSLTGSSGLTLGFGGTSGDNLFGVILNAVEDDT 441

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTV 322
           A R L+ P    ++  +++   G +    T       +S    +V   D G+ L  TP +
Sbjct: 442 ASRILSTPFGMTLNNATSALIVGQEIPVTTGQVLGEANSNPFRTVERKDIGIQLEVTPRI 501

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
                + L I+ EVS     V           R+   +V    G  IVL GL++      
Sbjct: 502 GENDTVRLDIRQEVSSVFGSVGTVTPDLILDKREIRASVLADDGEIIVLGGLVEQTDTLR 561

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
              +P+L  IP +G LFR+         + +   P +V+  A
Sbjct: 562 DTKVPVLGDIPGVGRLFRSEGKAATRRNLMVFIRPTIVRNKA 603


>gi|53802350|ref|YP_112861.1| fimbrial assembly protein PilQ [Methylococcus capsulatus str. Bath]
 gi|53756111|gb|AAU90402.1| fimbrial assembly protein PilQ [Methylococcus capsulatus str. Bath]
          Length = 729

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 111/295 (37%), Gaps = 28/295 (9%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVM-----NLLNIAG--------EDQVTLKVTIA 203
           S  A +++++ LS  G       +++ ++     NL  I            QV ++  + 
Sbjct: 434 STEAYDVTQSILSSRGNVTTDPRTNQLIVQDTPRNLERIRDLVRQLDKPVRQVMIESRVV 493

Query: 204 EVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGG-----KFVSEGGDFSVKGVLDR 253
               D L+++G +      ++T +         AD G        +S  G       +  
Sbjct: 494 IANVDFLRELGAKLDFRPKNLTAAERLNPTGSMADLGVDLAKLTTLSPYGTAQYVVSMGD 553

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTT 309
           +  +  L A ++      +A P +       A    G +  Y+     TG      +V  
Sbjct: 554 YLLDLELSAAQKEGRGEIVANPRVLTADQSKAKIMQGVELPYQITQQGTGGGIPVQNVAF 613

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
               + L  TP +     I + +  +  +       G+  +   R+ DT  ++ +G T+V
Sbjct: 614 KPAVLELDVTPHITPDDHILMDLMVKKDDKGELAPNGNF-AIEKREIDTVAQVANGETVV 672

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           L G+ +   +   + +P    +P +G +FR +     + E+ I  TP +VK  +M
Sbjct: 673 LGGVYEGTRRNNTDKVPFFGDLPGIGFMFRRNAVEDRKKELLIFITPKIVKQTSM 727


>gi|313199856|ref|YP_004038514.1| pilus (msha type) biogenesis protein mshl [Methylovorus sp. MP688]
 gi|312439172|gb|ADQ83278.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. MP688]
          Length = 603

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 126/313 (40%), Gaps = 34/313 (10%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +   +   ET +         +   ++ ++ +  +   QV ++ +I EV  +   Q G  
Sbjct: 282 AATVIASPETGVISVRATSRQHEKVQEFLDKVMASARRQVLIEASIVEVTLNDTYQAGID 341

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------SFETVLHALERATAI 269
            +  G     + S         VS  G  +  G +  F            L  L++    
Sbjct: 342 WTRLGGGFNINGSLGTT---GIVSPSGVAAAAGSVSPFVVGYSSNDISLGLRLLQQFGNT 398

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVT-------THDYGVVL 316
           + L+ P L  ++ Q+A        +Y T+ S      +TG+T++        T   GVV+
Sbjct: 399 KVLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGLTTGSTNLQSVTTTPNTVPVGVVM 458

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPSG 365
             TP +   G++ + ++  +S  V  VN  +           +P  +VR+ ++ + + SG
Sbjct: 459 SVTPQINDLGQVNINVRPTISRVVSYVNDPNPQLANANVISRIPQIQVRELESVLRVNSG 518

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T VL GL++D+IQQ  + +P +SKIP  G LF        +TE+ I   P +++   + 
Sbjct: 519 NTAVLGGLMQDNIQQASDRVPEVSKIPFFGKLFTARSDFTIKTELVIFLRPIVIQNATLE 578

Query: 426 DLSRPDDHYSVED 438
                     +  
Sbjct: 579 SEELQSYKQYLPS 591


>gi|74316224|ref|YP_313964.1| type IV pilus assembly protein PilQ [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055719|gb|AAZ96159.1| type IV pilus assembly protein PilQ [Thiobacillus denitrificans
           ATCC 25259]
          Length = 745

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 100/267 (37%), Gaps = 30/267 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKS 229
           + ++  L++    QV ++  +        +++G +                G +   S S
Sbjct: 475 RGLLARLDVP-ARQVMIEARVVIADSLWSRELGVRLGTRLFKATGRDNIGVGGTLNESAS 533

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE------------RATAIRTLAEPTL 277
            AA  G   V+   +    G        ++L+A                   + L+ P +
Sbjct: 534 IAAG-GTPTVTPQVELGTVGAAAGQIAMSLLNASNGNLLSLELSALEADNRGKILSNPRV 592

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + + A   +G Q  + T  ++    +VT  D  + L   P +L+   + + I+ +  
Sbjct: 593 MTSNQKPAVILNGTQIPFITPGTANSPATVTFKDAFLCLLVDPQILNNDALIMTIEVQKD 652

Query: 338 EPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                  A       P+   R+  T V + +G T+VL G+         + +P L  +P 
Sbjct: 653 AIDTANAAVGADIIAPAIATRRIKTQVRVNNGETLVLGGIFDQTEFNNVDKVPFLGDVPG 712

Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420
           LG LF+ +    ++TE+ +  TP ++ 
Sbjct: 713 LGNLFKRTNKQDQKTEMIVFITPRILD 739


>gi|254000203|ref|YP_003052266.1| type IV pilus secretin PilQ [Methylovorus sp. SIP3-4]
 gi|253986882|gb|ACT51739.1| type IV pilus secretin PilQ [Methylovorus sp. SIP3-4]
          Length = 714

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 117/342 (34%), Gaps = 63/342 (18%)

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
             +L+  + D   ++     + VL     T+     A  L E                ++
Sbjct: 387 AESLKNILTDEKQKILSKRGSAVLDPRTNTVFVQDTAKHLEEI---------------QQ 431

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++N  +I    QV ++  +        K +G +  +T  S+          G +      
Sbjct: 432 IINKTDIP-VKQVMIESRLVIADEKFGKSLGARFGMTQQSADGRNVIGGTLGNRITEVSS 490

Query: 244 DFSVK---------------------GVLDRFSFETVLHA-------------------- 262
           D ++                      G  D  S   V +A                    
Sbjct: 491 DGTITQGTHNGTIQTATTGSTATSSDGEPDLMSNLPVSNAYGNLAFTLLRLPAGLLLNLE 550

Query: 263 ---LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
              LE     + ++ P +T  + + A    G +  Y   SSS GATSV   D  + L  T
Sbjct: 551 LSALETDKRGKVVSSPRVTTANQKKAQIQQGTKIPYLRASSS-GATSVQFVDATLSLEVT 609

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P V    +I + +  +     +G     +PS   +  DT V + +G T VL G+ +   +
Sbjct: 610 PQVTPDDKIIMDLTIKKDR--VGQIFSGVPSIETQSVDTQVLVSNGETAVLGGIYEQTER 667

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              + +P    IP LG  F+      ++TE+ I  TP ++  
Sbjct: 668 NDVDKVPFFGDIPFLGNAFKRRVKQNDKTELLIFITPKIMDD 709


>gi|258406319|ref|YP_003199061.1| type IV pilus secretin PilQ [Desulfohalobium retbaense DSM 5692]
 gi|257798546|gb|ACV69483.1| type IV pilus secretin PilQ [Desulfohalobium retbaense DSM 5692]
          Length = 719

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 99/250 (39%), Gaps = 18/250 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-----HSITGSSSGPSKSFAADFGG 236
           + V++ L+   E QV ++  I   +    + +G       +   G+     KS +A    
Sbjct: 477 RSVIDRLDRP-EPQVLIEARIVYAKDAFKRSLGVSLAGEYYDDVGAVGQYEKSLSAGVLQ 535

Query: 237 KFVSEGGDFSVKGVLDR------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            F  E    +++G LD+      F  +  L   E     +T++ P L  ++ Q A  + G
Sbjct: 536 GFTPEVSTVNMQGALDKISGIDLFELDAQLKLGELKGVTKTISSPRLVTLNNQQAEISQG 595

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +       S +G T +   +  + L   P +    ++ L +      P       +   
Sbjct: 596 IKIA-NESESESGGTDIEYTEATLKLAVQPQITPDDKVILDLDIADDSPTE-----NGED 649

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R A T + + +  T+VL G+ +      K  +P L  +P+LG LF+    N E  E+
Sbjct: 650 IETRTARTKLLVENQETVVLGGVYQVIENNEKNQVPGLGDVPLLGWLFKTDNVNNENREL 709

Query: 411 FIAATPFLVK 420
            I   P +++
Sbjct: 710 LIFIRPTILE 719


>gi|90417988|ref|ZP_01225900.1| putative general secretion pathway (GSP) protein D [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337660|gb|EAS51311.1| putative general secretion pathway (GSP) protein D [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 700

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 110/240 (45%), Gaps = 12/240 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG--- 249
           + QV + VT+AEVR +   + G Q+ I     G  +   +    + +++G    V G   
Sbjct: 438 QMQVAVNVTMAEVRLNDQLRYGVQYFIKSGDIGLGRDKGSVGLFRTIADGIAREVPGFNF 497

Query: 250 -VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----- 303
            V    S + VL+AL+  T +R L+ P+L  +  + A F  G Q    T + ++      
Sbjct: 498 VVGSESSPDIVLNALDAVTDVRVLSSPSLVVMENEVAKFRVGDQIPIVTRTVNSVEDANA 557

Query: 304 --ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             +  V   D G++++  P +   G + + I+ E+S           P    R   +T+ 
Sbjct: 558 PISNEVEYRDTGIIMNVRPRIAENGVVTMVIEQEISSVTANA-GSLTPVISNRSVASTIS 616

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G T++L GL+ +     ++GIP L+++ ++G LF +       TE+ I   P +++ 
Sbjct: 617 VVDGQTVLLGGLISEQSDVGRDGIPGLNRLKVVGNLFGSKSRADVRTELLILIRPSVIRD 676


>gi|253997792|ref|YP_003049855.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. SIP3-4]
 gi|253984471|gb|ACT49328.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. SIP3-4]
          Length = 604

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 126/313 (40%), Gaps = 34/313 (10%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +   +   ET +         +   ++ ++ +  +   QV ++ +I EV  +   Q G  
Sbjct: 283 AATVIASPETGVISVRATSRQHEKVQEFLDKVMASARRQVLIEASIVEVTLNDTYQAGID 342

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------SFETVLHALERATAI 269
            +  G     + S         VS  G  +  G +  F            L  L++    
Sbjct: 343 WTRLGGGFNINGSLGTT---GIVSPSGVAAAAGSVSPFVVGYSSNDISLGLRLLQQFGNT 399

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVT-------THDYGVVL 316
           + L+ P L  ++ Q+A        +Y T+ S      +TG+T++        T   GVV+
Sbjct: 400 KVLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGLTTGSTNLQSVTTTPNTVPVGVVM 459

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPSG 365
             TP +   G++ + ++  +S  V  VN  +           +P  +VR+ ++ + + SG
Sbjct: 460 SVTPQINDLGQVNINVRPTISRVVSYVNDPNPQLANANVISRIPQIQVRELESVLRVNSG 519

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T VL GL++D+IQQ  + +P +SKIP  G LF        +TE+ I   P +++   + 
Sbjct: 520 NTAVLGGLMQDNIQQASDRVPEVSKIPFFGKLFTARSDFTIKTELVIFLRPIVIQNATLE 579

Query: 426 DLSRPDDHYSVED 438
                     +  
Sbjct: 580 SEELQSYKQYLPS 592


>gi|293603728|ref|ZP_06686147.1| type II secretion system protein D [Achromobacter piechaudii ATCC
           43553]
 gi|292817902|gb|EFF76964.1| type II secretion system protein D [Achromobacter piechaudii ATCC
           43553]
          Length = 611

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 118/286 (41%), Gaps = 12/286 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVS 240
           ++V+  L+IA + +VT+ V + EV  +   ++G  + S    S  P         G  + 
Sbjct: 315 ERVVAALDIA-QSEVTMDVQVLEVNANDELEVGVDYPSDLRFSVLPQGENGRITVGDLL- 372

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            G +    GV  R      L+ L++    + LA P +   + + AS   G +    T ++
Sbjct: 373 -GLNQGKIGVTSRNDLSAALNLLQKRGKTKVLANPKIRVRNMEKASIKIGEKVPVVTTTN 431

Query: 301 STGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRK 355
           + G  +  V   D G++L   P +     + +++  EVS     V     G +     R 
Sbjct: 432 ANGVVTESVNYQDVGLILQVEPRISLSNEVSVKVSMEVSNLKGEVKTAGGGVVYPMSTRN 491

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A+T +    G T VLAGL+     +   G+P LS +  LG+LF   +   + TEI +  T
Sbjct: 492 AETVMTARDGETQVLAGLVNQQQTRSSSGVPGLSVMGWLGSLFGGQKKTDQNTEIVLLLT 551

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           P + + +A   L    D Y           + +     P   +E +
Sbjct: 552 PHIERSMA---LPSAADSYFPSGTESRVTVSPMTTQAPPAATTEAD 594


>gi|224373284|ref|YP_002607656.1| general secretory pathway protein D [Nautilia profundicola AmH]
 gi|223589728|gb|ACM93464.1| general secretory pathway protein D [Nautilia profundicola AmH]
          Length = 445

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 98/264 (37%), Gaps = 22/264 (8%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           +  K +N +      +V + V I  V      + G   S        +     D   +  
Sbjct: 182 AIDKYINTMLNRLTKEVLIDVKIYTVELSKSHKTGIDWSQLSIQLNRT-----DVPLRGT 236

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--- 296
             GG  SV      FS   +L+ L +   + +L+ P +  ++ Q A  + G    YK   
Sbjct: 237 YIGGAQSVFSD-ATFSVVGLLNFLAQNGNVNSLSNPKVVTLNNQKAIISVGDTIYYKYAS 295

Query: 297 -TVSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAG 346
              +   G  +          GVVL  TP +   G I L I   +S       +      
Sbjct: 296 KVTTDQNGNPNTEYTIDSKFVGVVLDITPQISDNGDIILSIAPRISAFKDLTQLSNTTRD 355

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P  +     + V+L    T+VL GL+ +D      G+P+L +IP++  LF +      
Sbjct: 356 MPPDTKDNTMLSVVKLKDNQTLVLGGLITNDKTLQVNGVPVLKEIPLIKYLFSSREEVTS 415

Query: 407 ETEIFIAATPFLV---KPVAMRDL 427
             E+    TP ++   K   +RDL
Sbjct: 416 RKELVFVITPHIINLKKKKTLRDL 439


>gi|182413440|ref|YP_001818506.1| type II and III secretion system protein [Opitutus terrae PB90-1]
 gi|177840654|gb|ACB74906.1| type II and III secretion system protein [Opitutus terrae PB90-1]
          Length = 673

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/353 (21%), Positives = 136/353 (38%), Gaps = 55/353 (15%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI----------QDSQRAVELSET 166
            +D+A L   L + ++  N   +  + T    G VR                 AV L+  
Sbjct: 292 AKDVAPL---LSQLVSGQNTAAQKAAGT---SGSVRAPVPQPNQPNQAATPDAAVALAGA 345

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRD 208
            +  +  + Y      +  N + ++G                    QV ++V IAEV  D
Sbjct: 346 TVDTNEFSSYITILPDERSNSIVVSGTVDDIRLIRDLVEKVDILLAQVRIEVIIAEVTLD 405

Query: 209 ILKQIGF---QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
              + G      ++         +   +F GK    G D S +GV++  +F+  L     
Sbjct: 406 DSNKTGLSALNLTVATPQGSSQGTHITNFAGKV--AGWDIS-QGVVNPLAFQAALGDAGT 462

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--SSSTGATS-----------VTTHDY 312
            + ++ L+ PT+     + A    G      T   +++ G+T+           VT  D 
Sbjct: 463 RSNVKILSAPTIVTTHNKEAQILVGESLPIITGIYTTAVGSTTPTEPGFAQNQQVTYKDI 522

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            + L  TP +   G I L+I  +V + V  I +N  D P    R+A + + +  G  +VL
Sbjct: 523 AIDLKVTPLIGDDGSIQLKIDQKVDDVVRTISINNSDQPVIGRRQATSFINVSDGQIVVL 582

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            GL +    + +  +  L +IPIL  LF     +   TE+ +   P ++ P A
Sbjct: 583 GGLQRTANTRGRNKLGFLVEIPILSHLFGARTNSVRRTELLLFIRPHVIAPDA 635


>gi|77917753|ref|YP_355568.1| putative type II secretion system protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77543836|gb|ABA87398.1| putative type II secretion system protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 779

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 130/334 (38%), Gaps = 33/334 (9%)

Query: 157 SQRAVELSETFLS------QSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAE 204
           ++ AV L  T L          RN        +V+ L       N   + +V  ++ + E
Sbjct: 279 AKHAVNLLRTMLKINNLFVHEERNALVFRERPEVIQLAEQILDANDRADSEVLFELELIE 338

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETV-- 259
           V                S +  S S     GG  V+ G   GD +   V    S E+V  
Sbjct: 339 VSHSD------NWKFGPSLNPNSVSLGLAKGGNIVASGLSAGDATTNLVQSFSSLESVYT 392

Query: 260 -----LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDY 312
                    +       LA P +   + + A+   G +    TV+++   +  ++   D 
Sbjct: 393 LPTVVFDLQKTLVDSEILATPRIRVKNREKANVHVGNREPVITVTTTGETSTDNIQYVDV 452

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           GV L   P +     +   +  EVS         N     S    KA TT+ L +G   V
Sbjct: 453 GVKLDIEPKIQLDDTVVTNLSLEVSGVTEKNTTANGSLALSISTTKAQTTLTLKNGERTV 512

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + GL++DD  + ++ IPLL  +P++G LF N   ++++ EI ++ TP +++ V + D + 
Sbjct: 513 IGGLIRDDSTKTRKIIPLLGDLPLIGRLFTNHNKDKKKREILLSITPHILQNVDLPDRTL 572

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
            D     E++ K        +I     A E  GQ
Sbjct: 573 TDIWSGSEEELKTAANFASFQIPVEPVAEESSGQ 606


>gi|330815292|ref|YP_004358997.1| Type II/III secretion system protein [Burkholderia gladioli BSR3]
 gi|327367685|gb|AEA59041.1| Type II/III secretion system protein [Burkholderia gladioli BSR3]
          Length = 658

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 132/409 (32%), Gaps = 76/409 (18%)

Query: 83  SPRTMYLFGKNVGQANV------------ILIGHDGKQML-NLDILIERDIAHLEMTLRR 129
           + +++ L G+  G A +             L+  +G  M    D++     A L    R 
Sbjct: 195 TGQSVVLSGRVQGSATLRIHDVPWRDAFDALLDANGLAMAMRGDVIWVAPAAELTARERA 254

Query: 130 FI--ADSNIRVEMVSDTV-------------VLHGMVRTIQDSQR---AVELSETFLSQS 171
                     +E ++                +L G V   +   R    +  + T L   
Sbjct: 255 RFEAHARMADLEPLASRTFLLRYPRANDVARLLTGAVANQRVLSRRGSVLADARTNLLFV 314

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------- 217
                  +    ++  L+     QV ++  + E  R   +++G +               
Sbjct: 315 TDLDGRLAQIAALVAQLDRP-SRQVLIEARVVEGERGFSRELGARIALRTTRSLARGEGA 373

Query: 218 ---------------------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
                                       + G   G     AA   G F +     ++   
Sbjct: 374 GSGGAPGPAQPAAGEGAPAGSGKPPATGLVGGPEGRLADLAARPIGGFEAATAGLTLFVA 433

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                 +  L ALE     + ++ P +       A    G +  Y+      G + V   
Sbjct: 434 GASRLLDLELSALESQGRGQIVSRPRVVTADRAPALIEQGTELPYQ-AKVGRGVSGVQFR 492

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
              + L   P +   G + L +           +AG  P+   +   T VE+ +GGT+ +
Sbjct: 493 RATLKLEVEPQITPDGHVVLDLDIAKDSVGEQTDAG--PAIHTKHVRTRVEVENGGTVSI 550

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G+ + +       +P+L KIP+LGALFR+     + +E+ +  TP ++
Sbjct: 551 GGIYERNEWDDVTRVPVLGKIPVLGALFRHKARREQSSELVVYITPRVL 599


>gi|312897631|ref|ZP_07757048.1| bacterial type II/III secretion system short domain protein
           [Megasphaera micronuciformis F0359]
 gi|310621264|gb|EFQ04807.1| bacterial type II/III secretion system short domain protein
           [Megasphaera micronuciformis F0359]
          Length = 372

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 141/353 (39%), Gaps = 60/353 (16%)

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149
            G++ G  N+++   D     N+ + +    A  +  L+  I ++ + +E  +  +++ G
Sbjct: 43  LGRSAG-MNILI---DESVKGNITVYLHNVSA--QEALQSVIHEAGLCLEEKNGIILIEG 96

Query: 150 ------MVR-----TIQDSQRAVELSETFLSQSGRNQYANS-------------SSKKVM 185
                  V      +   +  A E++   L Q        S             ++K+++
Sbjct: 97  EGEGQKTVSEAFPLSYMKAADAAEVAGVALHQGSVMAVGGSNAIVMTGRHSDVTAAKQLV 156

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
             ++     QV ++  I  + ++ +K++G   S +    G                    
Sbjct: 157 QAVD-RAPQQVDVEAEILSLNKEAVKELGIDWSWSEGGGGV------------------- 196

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA- 304
              G       E  LHA         LA+P + A +G  A    G +    T   + G  
Sbjct: 197 ---GKPRLPYIEARLHAFVSDGKASILAKPHIMATNGTEARIFIGDRIPVVTERVTGGER 253

Query: 305 -TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR--VRKADTTVE 361
             +    + G++L +TP + + G +   I  EV  PV      D+ +YR   R+ DT V 
Sbjct: 254 YATTEYKEAGILLQYTPYIHTDGTVTANIHGEVGMPVY---VRDLRAYRVATRQVDTQVH 310

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +G  IV+ GL+  +  +    +P+L  +P++G LFR+   +++ETE+ I  
Sbjct: 311 IKAGERIVIGGLIGKEETENLRKVPILGDLPLIGKLFRSRYRSKKETEVIILI 363


>gi|157363362|ref|YP_001470129.1| type II and III secretion system protein [Thermotoga lettingae TMO]
 gi|157313966|gb|ABV33065.1| type II and III secretion system protein [Thermotoga lettingae TMO]
          Length = 1179

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 10/240 (4%)

Query: 187  LLNIAGE-DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
            +L IA    Q+ ++  +  V R ++ +I  Q+S++ S  G +           +S     
Sbjct: 943  ILQIAQPLKQIEIEAKL--VDRSLIDEITRQNSLSISLPGQAPEITVSSTSLSLSTSVIN 1000

Query: 246  -----SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                  +   L   S   V            LA P +   SG+ A    G +  Y+T+  
Sbjct: 1001 LFDYQKLFSYLSGASVTAVFELNNSNNLDNLLASPRIVTSSGKEARILIGDRVPYQTI-D 1059

Query: 301  STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
            + G   V   D G+ L  TP V + G I L I T+VS+P    N  D+P    R+ +T V
Sbjct: 1060 ADGNVIVNFLDTGIELRITPYVRTDGTIELNIFTKVSKPTYYPNI-DIPGESTRETETDV 1118

Query: 361  ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             L +G T+V+ GL+++  ++    +P L  +P +G LFR+     ++ E+ I  T  +++
Sbjct: 1119 ILKNGDTLVIGGLMRETKEETSAKMPFLGDLPFIGQLFRSKTEKADKRELLIFITARVIE 1178


>gi|288817748|ref|YP_003432095.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
 gi|288787147|dbj|BAI68894.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
 gi|308751347|gb|ADO44830.1| type II and III secretion system protein [Hydrogenobacter
           thermophilus TK-6]
          Length = 700

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 118/284 (41%), Gaps = 17/284 (5%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS------KKVMNLLNIAGEDQVTLKVTIAEV 205
              ++ ++ V++      +S       ++       + ++  L++    QV +++ IAEV
Sbjct: 391 SEAKEEKKIVKVGNIVADKSTNTLIIKATPIEFEVIRSLLRELDVV-PKQVLIEMVIAEV 449

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-FETVLHALE 264
                 Q G +  + G     S +    FG    ++        + ++ +    +L+ L 
Sbjct: 450 SLGKGLQYGVEGLLKGFLDSSSFTIGTSFGLAPQADTLQGFKTIIFNKNNDIRGILNFLA 509

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLY-------KTVSSSTGATSVTTHDYGVVLH 317
             T+++ L+ P +     + A    G +           T  +      V     GV+L 
Sbjct: 510 SKTSLKVLSAPHILVKDNEEAKIEVGAEVPILTQQIVPVTGGTLNVQNMVQYRTTGVILK 569

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLK 375
             PTV +   + L+I  EVS+ V      ++  P    R A TT+ L +    +L G+++
Sbjct: 570 VRPTVSADNSVTLKITQEVSDAVKNTVQPELTSPLITKRSASTTLILRNDQVGLLGGIIQ 629

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +Q+ K G+PLLS IP LG LF N   +   TE+ +     ++
Sbjct: 630 NRLQRQKSGVPLLSDIPGLGILFSNESVSSSNTELILLIKASVI 673


>gi|9625382|ref|NP_039614.1| gene IV product [Enterobacteria phage I2-2]
 gi|138048|sp|P15420|G4P_BPI22 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|14922|emb|CAA32520.1| gene IV product [Enterobacteria phage I2-2]
          Length = 428

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 108/245 (44%), Gaps = 12/245 (4%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +  +++A  +QV ++  + E        + F  ++            +  G    + GG 
Sbjct: 189 ITSIDVA-REQVLIQSLMFETSVSNGVDLSFALALASGGKVAGGFNTSALGTALSTAGGS 247

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298
           F   G+ +       L A++  +  + ++ P +   SGQS   + G    + T       
Sbjct: 248 F---GIFNGNILALSLQAVQSDSNSKVISTPRILTQSGQSGYISVGQNVPFVTGKVTGEA 304

Query: 299 -SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            S +    ++   D GV L  TP V+  G++ L I T+         A D+ +   R+  
Sbjct: 305 ASVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLSNQAIASDIIT-NQRQIQ 363

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTV++  G T++L GL+  +       +P +SKIP++G LFR+   ++++  +F+  T  
Sbjct: 364 TTVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIPLIGWLFRSHSDSKDDRTMFVLLTAH 423

Query: 418 LVKPV 422
           +++ +
Sbjct: 424 VIRAL 428


>gi|87309468|ref|ZP_01091603.1| Type IV pilin multimeric outer membrane protein [Blastopirellula
           marina DSM 3645]
 gi|87287776|gb|EAQ79675.1| Type IV pilin multimeric outer membrane protein [Blastopirellula
           marina DSM 3645]
          Length = 719

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 94/235 (40%), Gaps = 3/235 (1%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++ TI  V+ D    +G         +                +  D  +K    
Sbjct: 339 PLQVAIEATILSVKLDDSLNLGVNFEALIDKNKVRLVSGFPLSALDQIKLTDGGLKFGFL 398

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVTTH 310
             S    + ALE       +A P L  ++ Q A    G Q  ++  TV+ +    SV   
Sbjct: 399 DSSLGVFIDALESFGDTSVIASPQLLVLNKQRAEILIGEQKGYISTTVTETASTQSVEFL 458

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIV 369
           + G  L   P +   G + L +  E+S+  + V     +P+  V +  T V  P G TI+
Sbjct: 459 EIGTQLRLRPFITDDGMVRLEVHPEISDGDVKVEGQFTLPNKIVTQVTTNVICPDGRTII 518

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           + GL+K D+++    IP L  IPILG  FR  +      E+ +  TP +V    +
Sbjct: 519 IGGLIKSDLRKKGSQIPYLGSIPILGPAFRQKQETTVRDELIVLLTPRIVDAAHI 573


>gi|91774432|ref|YP_544188.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91708419|gb|ABE48347.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 539

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 121/313 (38%), Gaps = 32/313 (10%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +   +   ET +         +   ++ ++ +  +   QV ++ +I EV  +   Q G  
Sbjct: 214 AATVIASPETGIISVRATNRQHEKVQEFLDKVMDSARRQVLIEASIVEVTLNDTFQAGID 273

Query: 217 HSITGSSS------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
            S  G+        G S                 FSV         +  L  L +    +
Sbjct: 274 WSRLGNGFNMRSELGLSSVLTPAGIAGTAGTSVPFSVGYSSTNSDIDFSLRLLRQFGDTK 333

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-------------THDYGVVLH 317
            L+ P L  ++ Q+A        +Y T+ S     +V              T   GVV+ 
Sbjct: 334 VLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGTVQGSANLQAVTTTPNTVPVGVVMS 393

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------------MPSYRVRKADTTVELPS 364
            TP +   G + + ++  +S  +  V+  +             +P  +VR+ ++ +++ S
Sbjct: 394 VTPQINDSGLVNINVRPTISRVLGYVDDPNPQLAAVTPPIVSRIPQIQVRELESMLQINS 453

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T VL GL++D+IQQ  + +P ++K+P++G LF        +TE+ I   P +++  ++
Sbjct: 454 GNTAVLGGLMQDNIQQATDKVPGIAKVPLVGKLFTARSNFNVKTELVIFLRPIVIRNASL 513

Query: 425 RDLSRPDDHYSVE 437
                      + 
Sbjct: 514 ESDELASYKQYLP 526


>gi|311693304|gb|ADP96177.1| LOW QUALITY PROTEIN: pilus (MSHA type) biogenesis protein MshL
           [marine bacterium HP15]
          Length = 570

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 120/314 (38%), Gaps = 35/314 (11%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           D Q+ +      L             ++ +    +  + QV L+  I E+  +   Q G 
Sbjct: 239 DGQQVIVNPGAGLVMVRAGSEDLRMVEEYLRRTELIMQRQVILEAKILEIALNEGYQQGI 298

Query: 216 QHS-------ITGSSSGPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALER 265
             S       IT S   P    A    G+ +     GG FS    +    F  ++  L +
Sbjct: 299 NWSDIQSASSITASDGLPEDFTAQALAGQVIQTSDIGGLFSAS--VRAGDFTGLIELLGK 356

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLY-----------KTVSSSTGATSVTTHDY-- 312
              ++ L+ P ++ ++ Q A    G    +              ++ + +TSV    +  
Sbjct: 357 QGNVQILSSPRISTVNNQKAVIKVGTDEFFCHRYDFDDNNSAVTATDSTSTSVELTPFFS 416

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSYRVRKADTTVELP 363
           G+ L  TP +   G I L +   VSE         +          S  VR+ D+ +   
Sbjct: 417 GISLDVTPQISESGVITLHVHPSVSEVTDQEKVITIGERDVTLPLASSTVRETDSVIRAE 476

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPV 422
           SG  +V+ GL+++  +     +P  S+IP++G LF+  RF   ++E+ I   P +   P 
Sbjct: 477 SGQIVVIGGLIQNSSEDNNSAVPFFSEIPLVGELFKQRRFQSRKSELVILLRPVVAGTPE 536

Query: 423 AMRDLSRPDDHYSV 436
              D+S   +  +V
Sbjct: 537 MNADVSASRERMNV 550


>gi|118594956|ref|ZP_01552303.1| general secretion pathway protein D [Methylophilales bacterium
           HTCC2181]
 gi|118440734|gb|EAV47361.1| general secretion pathway protein D [Methylophilales bacterium
           HTCC2181]
          Length = 1061

 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 112/295 (37%), Gaps = 30/295 (10%)

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           V L G V +           +  +  +  +Q A     K ++ L      Q+ ++  + E
Sbjct: 493 VPLAGQVSS-----------QLLVIYNPNDQKALLRVNKAISELIDRPAKQILIEGIVLE 541

Query: 205 VRRDILKQIGFQHSITGSSS-----GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           +    L ++G   S T ++      G      +   G   +     +  G     SF   
Sbjct: 542 IASSELSKLGVNWSTTRTNGSIISLGTLAEITSVAAGSAAASVAYTTAGGTGAGPSFAAN 601

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTTHDYGVVL 316
           L AL   T  + L++P+L  +  + AS   G         T +        T    G++L
Sbjct: 602 LEALITKTKSQVLSKPSLMTLDNRQASIKVGTNIPIAASVTTAVGASTAGFTYLPVGIML 661

Query: 317 HFTPTVLSPGR-IGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSG 365
           +  P +    + I + I   +S+             GV     P+  +RK  T   + + 
Sbjct: 662 NIRPRISDDNQEISMLIDATISQKVDDEDVIIYNSTGVAMASAPTTTLRKIQTYARVNNE 721

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +++AGL+         G+P+LS IP+LG LF     +  +TE+ +  TP +++
Sbjct: 722 SPLIIAGLVSKQKTMTTTGVPVLSSIPLLGGLFSFESPSNVDTEVVLIITPTIIE 776


>gi|261414659|ref|YP_003248342.1| type II and III secretion system protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371115|gb|ACX73860.1| type II and III secretion system protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326330|gb|ADL25531.1| bacterial type II and III secretion system protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 487

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 100/245 (40%), Gaps = 22/245 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------PSKSFAADFGG 236
           Q+ +   +  V  ++ +++G   +    SS                    S    +   G
Sbjct: 192 QIMITAKLVVVNSELARELGVDWTAALGSSTLTPGTAAAATGATAGSSRISGVIQSFPNG 251

Query: 237 KFVSEG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              + G  + ++   L   + +  +  L    +   LA P ++ +    A    G +   
Sbjct: 252 TSPAVGKANTAITASLLDNNLQIAISNLMGDASTEVLASPQVSTLDNTEAQVFMGDKVSI 311

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           + +   +G +S    + G+ L  TP V    RI L +  E +    G +         ++
Sbjct: 312 RVI-DDSGESSTKMVETGIKLTVTPHVSGDNRILLDLHPENN--SYGYDEKGEVVISTQE 368

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A T V +  G T+V+ GL +++  + + GIP L  IP+LG LF+ SR +  + ++ I  T
Sbjct: 369 AKTKVVVADGETVVIGGLTRNENTESESGIPFLKDIPLLGNLFKYSRKSITKKDLVIFVT 428

Query: 416 PFLVK 420
           P +++
Sbjct: 429 PRIIR 433


>gi|256829756|ref|YP_003158484.1| type IV pilus secretin PilQ [Desulfomicrobium baculatum DSM 4028]
 gi|256578932|gb|ACU90068.1| type IV pilus secretin PilQ [Desulfomicrobium baculatum DSM 4028]
          Length = 693

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 93/242 (38%), Gaps = 19/242 (7%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------G 243
             E QV ++  +     +  + +G +   + ++   +   +  + G F S G        
Sbjct: 458 RAERQVMIEARLVYATDEFQRSLGVKWGTSYATETAANLPSEQWRGTFASTGLNAINTVN 517

Query: 244 DFSVKGVL------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             ++ G +      D F+ +  L   E    ++T++ P +  ++   A    G +    T
Sbjct: 518 GITLGGTIGKFLGEDLFALDAALQLGEANNLVKTISSPRILTLNNNRAEIQQGTKLATAT 577

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            S S G T+    +  + +   P +    ++ L ++     P       D      ++  
Sbjct: 578 ESES-GGTTTEYEEAVLKISVLPQITPDNKLILDLEISDDSPK-----SDGRDIDTKQTK 631

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T + +    TIV+ G+ K         IP L  +P LG LF+N+   + + E+ I   P 
Sbjct: 632 TKMMVSDRETIVIGGVQKTTETSNTNQIPGLGDVPGLGWLFKNTYDAKSKAELLIFIQPR 691

Query: 418 LV 419
           ++
Sbjct: 692 IM 693


>gi|294055809|ref|YP_003549467.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615142|gb|ADE55297.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 595

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 87/496 (17%), Positives = 181/496 (36%), Gaps = 79/496 (15%)

Query: 13  SIFLFSSNPSVAKLPPIKEA---NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
           ++   S   + A++P +  A   ++ V+     + G  +  ++   + I +  P +   V
Sbjct: 66  AVAGVSVESADAEIPEVTVALPEDSTVVLDLPGQTGSVEAGTVEEEETISVDFPDEDVRV 125

Query: 70  LVSD-PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           ++ +     D+ +  P  +      VG+ ++ L     +++  + +         +  + 
Sbjct: 126 ILFNVAELFDLNLVVPEAL------VGRTSIKLHNVTWREVFEVVLEPLGYAYIEDRNII 179

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK------ 182
           +  + ++I  E V+ TV+    ++  + +     ++      +G    A+S         
Sbjct: 180 KVKSVADIAAEPVTTTVI---AIKHARAADIMGSIAPLVDGAAGGKMVADSRKNLLVITE 236

Query: 183 ------KVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGP----- 226
                 K+ +L++      +QV ++  + EV  + L+ +G   S     G S+GP     
Sbjct: 237 RPSQIQKIRDLVDEVDRATEQVMIETKLVEVFDEDLENLGVNWSSLNGYGLSAGPFTRQW 296

Query: 227 ------SKSFAADFGGKFVSEGGDFSVKGVLDRF--------------SFETVLHALERA 266
                 S     +F     ++   F    ++D                 F  +L ALE  
Sbjct: 297 DRSREKSTGTTTEFSPATDNQPAQFVTGNLVDSLASTSRLDTAVFNADQFNVILSALETL 356

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTHDYGVVLHFTPT 321
              + +  PT+  ++ + A F  G  +  + ++ +    +     V     GV L  TP 
Sbjct: 357 NDTKLVTNPTVVVMNKRPAKFEVGRDYPIREITFNQETGTYEAGGVEETFIGVELEVTPE 416

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           VL  G I L +   +S     V +     P    R  DT V +  G T+ L GL      
Sbjct: 417 VL-GGNIHLDVDPTISALDGTVESFGAIDPIVARRSVDTEVIIKDGYTLALGGLADTQEV 475

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT----------------PFLVKPVA 423
                +P+L  IP LG LF +   +  +  + I  T                P +++ + 
Sbjct: 476 NSGTKVPILGDIPGLGRLFSSDSDSLGKRNLIIFITAKTLNPEGSDYRDVIDPRMIEEMG 535

Query: 424 MRDLSRPDDHYSVEDD 439
           + D   P  H+   +D
Sbjct: 536 ITDYEVPGYHFREGND 551


>gi|312880051|ref|ZP_07739851.1| type II and III secretion system protein [Aminomonas paucivorans
           DSM 12260]
 gi|310783342|gb|EFQ23740.1| type II and III secretion system protein [Aminomonas paucivorans
           DSM 12260]
          Length = 576

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 104/263 (39%), Gaps = 23/263 (8%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF-------QHSITGSSSGPSKSFA- 231
           S +K ++  +  G  QV L+  I E+  D  +++                ++G    +  
Sbjct: 300 SIRKFLDKADHPG-QQVMLQARIVEIGDDGKEELESLISRVYKNWWFAFDNNGGMIGYTR 358

Query: 232 ----------ADFGGKFVSEGGDFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAI 280
                     A+        G D SV       +F +  L ALE A   R LA P++   
Sbjct: 359 INKPDLYDDDANDNRIVKPGGLDLSVVAQNPDLNFLDAGLRALETANKGRMLASPSVVVH 418

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
            G+ A         Y +     G  + +    G  + FTPTV     I + +  +  E  
Sbjct: 419 DGKKAKIALTENVKYISARDQAGNPTYSEERVGPTIEFTPTVGRDRVITMEMTLKTGEVT 478

Query: 341 IGVNAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             +  G    +P    R+ ++TV + +G   V+ GL +D     +  IP+L  IP+LG L
Sbjct: 479 KYIRGGMGEQVPQTSTREVNSTVRIRNGEPFVVGGLFRDGQTHSENKIPILGDIPLLGEL 538

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           FRN    +  TE+ +   P+L+ 
Sbjct: 539 FRNRTTQKIHTEVAMIVIPYLLD 561


>gi|9630755|ref|NP_047359.1| maturation protein [Enterobacteria phage If1]
 gi|6136220|sp|O80300|G4P_BPIF1 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|3676288|gb|AAC62158.1| maturation protein [Enterobacteria phage If1]
          Length = 429

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 11/234 (4%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++  I E          F       S                S GG F   G+ +
Sbjct: 197 RTQVLVESVIFETTASDGFDFSFAAGDPSGSPVAGGINTDRLTSVLSSTGGSF---GIFN 253

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-------SSSTGAT 305
                  L ALE ++    L+ P +  +SGQ  +FT+G    + T        + +    
Sbjct: 254 GNILGLSLKALETSSKSTLLSMPRILTMSGQPGTFTAGQNVPFVTGRVTGEAANVNNPFQ 313

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           ++  HD G+ L   P V   G + + + T          A D+ +   R   TTV+L SG
Sbjct: 314 TIERHDVGISLKVVPVVTPGGLLIMDVSTNADSISDSQTASDIIT-NTRSISTTVQLKSG 372

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L G++ +        +P +SKIP++GALF +   N  +  ++I     +V
Sbjct: 373 QTVLLGGMVDNRESDSDSSVPWVSKIPLIGALFTSKSSNANKRTLYILIRARVV 426


>gi|134095138|ref|YP_001100213.1| mannose-sensitive hemagglutinin L [Herminiimonas arsenicoxydans]
 gi|133739041|emb|CAL62089.1| Putative general secretion pathway protein D [Herminiimonas
           arsenicoxydans]
          Length = 581

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 118/335 (35%), Gaps = 58/335 (17%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  +V + +D +  V   ++ +           S    +    ++ + QV L+  I EV 
Sbjct: 223 LDAIVGSGKDGRSVVISPQSGVVVVKAMPDELRSVSAYLKATQLSVDRQVILEAKILEVE 282

Query: 207 RDILKQIGFQHSI----------------TGSSSGPSKSFAADF---------GGKFVSE 241
            +   Q G   S                 T   +G S +  A           GG+  + 
Sbjct: 283 LNDGFQTGVNWSAFRTGSSRISGGSISPGTVLQTGGSLATGASSIDATARTFSGGQLTAL 342

Query: 242 GGDFSVKGV----------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            G   + GV          L   +F  ++  LE    +  L+ P +  ++ Q A    G 
Sbjct: 343 PGQDLLSGVSNLGSMFGLALQTKNFAALISFLETQGNVHVLSSPRIATLNNQKAVLKVGT 402

Query: 292 QHLYKT------VSSSTGATSVTT------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
              + T       SS TG  +VT          GVVL  TP +   G I L I   VS+ 
Sbjct: 403 DEFFVTNVSSNITSSGTGGNTVTPNVTLQPFFSGVVLDVTPQIDEQGNIILHIHPSVSDV 462

Query: 340 VIGV------NAGDMPSY-----RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
                       G + +         + D+ V    G  I L GL++      +  +P  
Sbjct: 463 QTSEKVINLGTGGGVLTLPLAKSNTSETDSVVRAQDGNIIALGGLMRQGTSSDRSQLPGA 522

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
             +P+LG LFRN+  + ++ E+ I   P ++   +
Sbjct: 523 GDVPVLGNLFRNTNQSTQKRELVILLKPTIIHNAS 557


>gi|319955805|ref|YP_004167068.1| general secretion pathway protein d [Nitratifractor salsuginis DSM
           16511]
 gi|319418209|gb|ADV45319.1| general secretion pathway protein D [Nitratifractor salsuginis DSM
           16511]
          Length = 664

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/310 (20%), Positives = 123/310 (39%), Gaps = 35/310 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFV- 239
           +V++ +++  + QV +K  + E+     + IG ++ ITG    S    S   + GG+ V 
Sbjct: 329 QVIHRIDV-EKPQVFIKARVVEINSKKARAIGAKYGITGGWLTSHGLISVGGNMGGEAVN 387

Query: 240 -----------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                      S+   FS+  V   F+    +  L++  A   L+EP++   +   +   
Sbjct: 388 ISQRLMSLVQQSDDNAFSLSDVKSLFALGINIDLLQQDGAAHVLSEPSILCTNNMESELF 447

Query: 289 SGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
            G      T S++          +    D G+ L   P + S  ++ L++   + +    
Sbjct: 448 VGETRSILTSSTAGDNKNDLSRNNYEREDIGLTLKVKPRLSSNNKVALKVDAIIEDVDDS 507

Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                  P+   R   T   + +G T++L GL+K+        +P    IPI+G LFR+ 
Sbjct: 508 SGYNSPTPTTTKRTITTNATVRNGQTVILGGLIKNLTGAAHNKVPFFGDIPIIGRLFRDE 567

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
              + + ++ I  TP++V+     DL+R              F + +  I         E
Sbjct: 568 GTAQRKVDLVIYLTPYVVR--RSSDLTRLR-----------HFLSNLESIQHRYSRFIRE 614

Query: 462 GQNYKGAIGF 471
              ++G  G+
Sbjct: 615 RMRHRGNTGY 624


>gi|92116356|ref|YP_576085.1| type II and III secretion system protein [Nitrobacter hamburgensis
           X14]
 gi|91799250|gb|ABE61625.1| type II and III secretion system protein [Nitrobacter hamburgensis
           X14]
          Length = 773

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 41/286 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------PSKSFAADFGG 236
           QV +  TIAEV        G Q  +T  + G                  P+ +   D  G
Sbjct: 484 QVAIDATIAEVTLTNELSYGVQSYLTSKNLGMKANQGSLLNTQSNAAPIPTSAGTTDLAG 543

Query: 237 KFVSEGGDFSVKGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFT 288
              S    F +   L  F+F          +L AL   T+++ L+ P+L  I+ Q+A+  
Sbjct: 544 AAGSVANAF-INRALPGFNFLIGSEAQPAVILDALHAVTSVKVLSNPSLVVINNQTATLQ 602

Query: 289 SGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
            G      T +++          S+   + G++L  +P +   G + L ++ E+S     
Sbjct: 603 VGDTVPVSTGTATVLNGNNNVVNSIDYRNTGIILRVSPRINVNGNVRLEVEQEISSVQPT 662

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            ++   P+   R+  +++ + SG T++LAGL+ +     + GIPLL +I  LG  F +  
Sbjct: 663 ASSTLTPTVAERRVKSSISVASGQTVLLAGLISEQQNGGRSGIPLLDEIRGLGDAFAHQG 722

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
                TE+ I   P +++           D + V ++ ++     V
Sbjct: 723 KRGTRTELIIFIRPQIIRDG--------TDAHHVAEELRSKLRGSV 760


>gi|330719673|gb|EGG98224.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC2047]
          Length = 419

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 110/317 (34%), Gaps = 45/317 (14%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             +++R V   ++ +           +  + ++   ++   QV L+  I EV      Q 
Sbjct: 86  AGENRRVVVSPQSGMVIVHALASELRAVAEFLDKAELSLRRQVILEAKILEVELSDGFQA 145

Query: 214 GFQHS--------------------------ITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           G   S                          +TG ++  +            S+      
Sbjct: 146 GVNWSALAEVGQDKNVIFGTGLTNSVRTINPVTGDTTLTNTILGTPTATTATSDSVGGVF 205

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---------- 297
              L+   F  ++  L    +++ L+ P ++ ++ Q A    G    + T          
Sbjct: 206 SAALNLKDFNALIDLLSTQGSVQVLSSPRISTVNNQKAVIKVGTDEFFVTEISSETTTNT 265

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------- 350
            S+++    +T    G+ L  TP +   G + L I   VSE          P+       
Sbjct: 266 SSTTSTDVELTPFFSGIALDVTPQISEEGEVVLHIHPTVSEVTDQTKTVVGPNGDLVLPL 325

Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
               +R+ D+ V   +G  +V+ GL+++         P L  +P+LG  FR  R +  ++
Sbjct: 326 ALSSIRETDSIVRARNGQVVVIGGLMQNSSTDNNAKTPFLGDLPLLGNAFRQKRQSSVKS 385

Query: 409 EIFIAATPFLVKPVAMR 425
           E+ I   P +    A R
Sbjct: 386 ELVILLKPIIADDDAWR 402


>gi|152991627|ref|YP_001357348.1| type II secretion system protein D [Sulfurovum sp. NBC37-1]
 gi|151423488|dbj|BAF70991.1| type II secretion system protein D [Sulfurovum sp. NBC37-1]
          Length = 678

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 39/277 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGKFV 239
           ++ +  ++I  + QV +K  I E+ +++ +Q+G ++ + G +   S   + A + G   +
Sbjct: 325 RETVRKIDIP-KVQVYVKAKIVEIDKNMAEQVGMKYGMNGGTITSSGLFTLAGNMGASAL 383

Query: 240 S----------------------------EGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                                            F        F+    L  LE+  A   
Sbjct: 384 QMSPALLGFLNTNNTKTYTDPVTGSVIQENNPAFKFDSTDKAFALGAALDLLEKNGAAHL 443

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSP 325
           L+EP++   + + A    G      T +  +         + +  D G+ L   P + S 
Sbjct: 444 LSEPSVLCTNNKEAEIYVGQTRSILTQAQQSTTAISNVINNYSREDIGLTLKVKPRLSSN 503

Query: 326 GRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            ++ L ++T + +         D P+   R   T   + +G  I+L GL+K    +    
Sbjct: 504 NQVTLEVETVLEDIDPSSEQVEDRPTTTKRTVKTNAIVRNGEMIILGGLIKRAGGKNISK 563

Query: 385 IPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVK 420
           +P L  IP+LG  LF ++     E  + I  TP++V+
Sbjct: 564 VPFLGDIPVLGEMLFTHTGDVEREQNVVIYLTPYIVR 600


>gi|302879515|ref|YP_003848079.1| type II and III secretion system protein [Gallionella
           capsiferriformans ES-2]
 gi|302582304|gb|ADL56315.1| type II and III secretion system protein [Gallionella
           capsiferriformans ES-2]
          Length = 599

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 116/307 (37%), Gaps = 31/307 (10%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           T +++   +   ET +         +++ ++ ++ +      QV L+ TI EV      Q
Sbjct: 272 TYREAAYVIANPETGIISVRATSRQHATIREFIDKVMNNARRQVLLEATIVEVTLSDQYQ 331

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
            G   S+   + G S +  +  G         ++  G    FS    +  LE    +  L
Sbjct: 332 QGIDWSLL-RTLGLSLTQVSPVGALTAMGTISYTNPGKPGSFSLSGSIKLLETFGKLHVL 390

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------------ATSVTTHDYGVVLHF 318
           + P L+ ++ Q+       + +Y T+  + G               +++ T   G +++ 
Sbjct: 391 SSPKLSVLNNQTGLVKVVDESVYFTIEVTQGTYGANNTVLTLPTYTSTIHTVPVGFMMYV 450

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVN----------------AGDMPSYRVRKADTTVEL 362
           TP +     + L ++  ++  +                       +P  + R+ ++ + +
Sbjct: 451 TPQIGGDTEVTLNLRPTITRILSYAKDPNPALINTITPALSVTNLIPQIQTREMESIMRV 510

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +G   VL GL++D        IP L  +P LG LF+       ++E+ +   P ++   
Sbjct: 511 RNGDIAVLGGLMQDTRAGDTNQIPGLGSVPGLGQLFKARTDKNTKSELVVFLRPVILNQE 570

Query: 423 AMRDLSR 429
              DL R
Sbjct: 571 TQYDLVR 577


>gi|301165498|emb|CBW25069.1| putative pilus assembly protein [Bacteriovorax marinus SJ]
          Length = 609

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 59/266 (22%), Positives = 108/266 (40%), Gaps = 29/266 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--------------------- 220
           KK++++L+     QV ++  I EV  +  K+IG Q+ +                      
Sbjct: 334 KKIVDVLDTQTP-QVLIESKIVEVNENYRKEIGLQNGVNFGYDPIGQIGSANPTVVGSDV 392

Query: 221 --GSSSGPSKSFA-ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
             G+++GP  SF+ A   G         +V       +    L  LE  +  + +A P +
Sbjct: 393 LPGTNAGPGFSFSSAPSSGDGARSLFGLTVTRFNRLLNLSFTLQLLETESKGKIVASPKV 452

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
              + + A  ++     +    S+ G     +    +  + L  TP V + G I L +  
Sbjct: 453 ITQNKKKAVISTKETTSFSKSLSTNGQAQEITFEEAEASLSLEVTPQVTNEGSISLELDL 512

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
              +     +A   P  + R+  T V + +G TIV+ G+   + ++   G+P L  IP++
Sbjct: 513 LKQQFGTRPSAAAPPDKQERRVTTNVLVDNGSTIVIGGVYNYEKRESHSGVPFLKDIPLV 572

Query: 395 GALFRNS-RFNREETEIFIAATPFLV 419
           G LFR        + E+ I  TP +V
Sbjct: 573 GWLFRTPYAPEVIKQELLIFLTPRIV 598


>gi|154147986|ref|YP_001406614.1| type II and III secretion system protein [Campylobacter hominis
           ATCC BAA-381]
 gi|153803995|gb|ABS51002.1| type II and III secretion system protein [Campylobacter hominis
           ATCC BAA-381]
          Length = 541

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 112/312 (35%), Gaps = 68/312 (21%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------ITGSSSGPSKSFAA 232
              +N +    E QV+L V+I  V        G   S         + G  S P+     
Sbjct: 212 DAYINKMKKRLERQVSLDVSIVAVELSNSYTTGIDWSKFQLGFNTYLNGDPSTPTSYSFG 271

Query: 233 D----------------------------------------FGGKFVSEGGDFSVKGVLD 252
           +                                         G    S+       G   
Sbjct: 272 NRNKVGQVTSLPQIEDIKDKDGKILFSRPTSLGTWDYKEKSMGSVKASDSNGVWAIGANL 331

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GAT 305
            F+ + +++ LE     + ++ P +T ++ Q A  + G    Y+   ++T       G T
Sbjct: 332 NFNIDGMINFLETKGKTKIISSPKVTTMNNQPAIISVGDVINYRIQENTTSGGQTDAGTT 391

Query: 306 SVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSYRV 353
           SVT  +Y    G++L+  P +    RI LR+   +S+            ++    P    
Sbjct: 392 SVTYTNYSTFIGILLNILPEISDDNRIMLRVNPSLSDFKYQADREATAQLDRVMAPDTIQ 451

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           +K  + V +  G T++L GL+  +  +  + +P LS IP++G LF+++      TE+   
Sbjct: 452 KKISSVVWVDDGDTVILGGLIGQNKGKDNKNVPFLSDIPLIGNLFKSTADRLTTTELVFV 511

Query: 414 ATPFLVKPVAMR 425
            TP ++     +
Sbjct: 512 ITPRIIDNTDTK 523


>gi|170700771|ref|ZP_02891764.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
 gi|170134335|gb|EDT02670.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
          Length = 244

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 89/213 (41%), Gaps = 3/213 (1%)

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           R   +      + + + +  +   AA   G F +    F++         +  L ALE  
Sbjct: 2   RAQGRAPTTDGAASATDTRNALDLAARPLGGFEAATAGFTLFAAPLSRVLDVELSALEAQ 61

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + ++ P +       A    G +  Y+      G + V      + L   P +   G
Sbjct: 62  GRGQIVSSPRVVTADRVKAIVEQGSELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDG 120

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           R+ L +  +V++  IG      P+   +   T VE+ +GGT+ + G+ +   +     +P
Sbjct: 121 RVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTRVP 178

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           LL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 179 LLGKIPVLGALFRHRARRDQRSELVVFITPTVV 211


>gi|225850524|ref|YP_002730758.1| putative pilus [Persephonella marina EX-H1]
 gi|225645353|gb|ACO03539.1| putative pilus [Persephonella marina EX-H1]
          Length = 524

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 111/265 (41%), Gaps = 22/265 (8%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSF 230
              +Y     +K +  +    + QV ++  I EV      Q G   S +  + +G S S 
Sbjct: 259 TAPKYKMRKVEKFLKKILSEVKKQVLIESKIVEVTLSDGMQYGINWSALLRNVAGASISL 318

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                    S  G+  V G+     F  V++AL     I TL+ P +  ++GQ+A  +SG
Sbjct: 319 RQTLA--LPSSYGEVVVAGL----DFNAVINALSSVGRIETLSNPRIRVLNGQTALISSG 372

Query: 291 GQHLYKTVSSSTGATSVTTHDY---------GVVLHFTPTVLSPGR------IGLRIQTE 335
               Y     +T  T+  T            GV+L  TP +           +  +I+  
Sbjct: 373 VVVPYWEKQITTLGTTTVTQSVMYIRRSVLSGVLLGVTPYIEGDHIMINIVPVSTKIEGT 432

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                      + P   +++A T +++  G  I++ G++  + +  +  IPLLS IP+ G
Sbjct: 433 KQLVENNEVVAEAPVLNIKEAGTIIKVKDGDLIIIGGMINTEKRVEENKIPLLSNIPVFG 492

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            LF+N +  RE+ E+ I   P ++K
Sbjct: 493 NLFKNKKVYREKKELIIFLKPRIIK 517


>gi|329890282|ref|ZP_08268625.1| general secretion pathway protein D [Brevundimonas diminuta ATCC
           11568]
 gi|328845583|gb|EGF95147.1| general secretion pathway protein D [Brevundimonas diminuta ATCC
           11568]
          Length = 698

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 114/312 (36%), Gaps = 45/312 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V+  L++    QV ++  + E+    ++ +G Q  + G       +++          G
Sbjct: 352 EVIRQLDVR-RQQVLIEAIVVELSDKAVRDLGVQWLMAGEQGVGLTNYSDRAAPLVPIAG 410

Query: 243 G-----------------DFSVKGVLDRFSF-------------ETVLHALERATAIRTL 272
           G                 + ++  +L    F               +++A +       L
Sbjct: 411 GAAAGQLDKDDPLRERLQNLALNSLLGANGFVGGAGGKWGDGLFGFIINAAKTDAGSNLL 470

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGR 327
             P++  +  + A+F  G +    T  +     S   T+    D GV L   P + + G 
Sbjct: 471 QTPSIMTLDNEEATFLVGQEVPITTGQTILDGNSNPFTTTERKDIGVRLTVRPQINAGGS 530

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           I L ++ EVS     + +G        R+ +TT+ +  G   V  GLL  +       +P
Sbjct: 531 ITLTLRQEVSSINGLLTSGANDLILDKRELETTLVVDDGDIAVAGGLLDQNDGLETSKVP 590

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            L  IP +G LFR++   R  T + +   P +++  A        D   +  D   +   
Sbjct: 591 GLGDIPGVGVLFRSTSRERGRTNLMVFLRPTILRTTA--------DAQGLAADRWGYMRG 642

Query: 447 RVNKIYGPKEAS 458
              +++  +E S
Sbjct: 643 EQQRVHPDREPS 654


>gi|254445969|ref|ZP_05059445.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198260277|gb|EDY84585.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 736

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 114/283 (40%), Gaps = 23/283 (8%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQHSITGSSSGPSKSFAADFGG-- 236
           ++N ++I    QV ++V IAEV  +  + +      F  +      G +       G   
Sbjct: 426 LVNKIDILLP-QVRIEVIIAEVSLNENEGLSRGMDAFSMTYAEQDDGSANITIPGPGDDA 484

Query: 237 ---KFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
               F+  G D S     GV+   +   +L+     + ++ L+ PTL     + A+    
Sbjct: 485 PAINFLGLGLDGSFNYNDGVISGLTLNGILNTARSNSNVQLLSVPTLVTTHNKEATIVVA 544

Query: 291 GQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGV 343
                 T S ++  +     +V   D G+ L  TP +     I L I  ++ +    + +
Sbjct: 545 EARPIVTSSQTSSISDTFRQNVQYEDIGIELTVTPLIGPNDVIQLEIDQKIDDISGKVTI 604

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +  D P    R+A + V + +   +VL GL ++ + + +  +  L +IP+LG LF     
Sbjct: 605 DGNDQPIIGRRQATSYVSVANHELVVLGGLQRNRVTKGRSKMSFLGEIPLLGGLFNRRSD 664

Query: 404 NREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDDAKAFF 444
              +TE+ +   P +++      +D S+  D        + F 
Sbjct: 665 ESVKTELLVFIRPEVIRTTDDVNQDASKKIDELEAAAAIQRFL 707


>gi|268679665|ref|YP_003304096.1| pilus (MSHA type) biogenesis protein MshL [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617696|gb|ACZ12061.1| pilus (MSHA type) biogenesis protein MshL [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 506

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 107/284 (37%), Gaps = 31/284 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           + + LL      QV + V+I  V  D   + G   S        +  F  +     +   
Sbjct: 218 EYIELLKERLHKQVLIDVSIISVALDSSNKTGIDWSKFQLGFNSTSMFNNNNDNANMYHT 277

Query: 243 GDFSVKGVLDR-------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +S  G+                FS   ++  L  +   + ++ P +  ++ Q A  T 
Sbjct: 278 SPYSEVGLSGTPILNNLTVVNDAVFSVSGLIDFLGSSGDAKVVSSPKVLTMNNQQALITV 337

Query: 290 GGQHLYKT-------VSSSTGATSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSE 338
           G    Y+         +S T   SVT  +Y    GV+L+ TP +     I LRI   VS 
Sbjct: 338 GDNINYRIPEETDAATTSGTATLSVTYMNYSIFIGVLLNITPEISEDNEIILRINPSVSS 397

Query: 339 PVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
                +           P  + +K  T V++  G TI+L GL+  +       +PLLS I
Sbjct: 398 FKYTDDDQKTTEPREIAPDTQEKKLSTVVKVKDGSTIILGGLIASEKGHENSSVPLLSSI 457

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           P+LG  F++S    +  E+    TP ++        +  D  +S
Sbjct: 458 PLLGEAFKHSEETLKTKELVFVITPRIIGAKGTDKATLKDLGFS 501


>gi|152993261|ref|YP_001358982.1| general secretory pathway protein D [Sulfurovum sp. NBC37-1]
 gi|151425122|dbj|BAF72625.1| general secretory pathway protein D [Sulfurovum sp. NBC37-1]
          Length = 536

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 115/294 (39%), Gaps = 39/294 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSKS 229
           + +N+L+   + QV + V I  V+ D  +  G   S             I    +  S +
Sbjct: 244 RYINVLSRQIKTQVLIDVRILAVKFDDSRTTGVDWSQLYGLQNFAVDSLIMAQKNVASYT 303

Query: 230 F-----AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           F       D      ++  + S+  +  + +   V+  L     ++ ++ P +  ++ Q 
Sbjct: 304 FDKLNGIQDTAFGPDTQPRNGSLVQLTGKANINEVVKFLATQGDVKAISSPRVMTLNNQP 363

Query: 285 ASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           A  + G +  YK  S+S   T          SV +   G++L  TP + + G I L+I  
Sbjct: 364 AMISVGKELFYKLKSTSALGTGNNANTAQGESVDSVFAGILLDITPEIGNNGIITLKINP 423

Query: 335 EVSEPVIGVNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            +SE +  +              P    R+  + V++  G   +L GL+          I
Sbjct: 424 SISETIEDIQTQKNTVTGSRDMPPDLIRRQIASVVKVKDGEHAILGGLITSSTGTKVNKI 483

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
           PLL  IP+L   F++        E+ +  TP +VK    + ++  D  Y+  ++
Sbjct: 484 PLLGDIPLLEYAFKHEEKINRVEELVLIITPHIVK--TSKSVTLKDLGYTKLNE 535


>gi|9626242|ref|NP_040579.1| G IV protein [Enterobacteria phage Ike]
 gi|138049|sp|P03667|G4P_BPIKE RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|14956|emb|CAA26076.1| unnamed protein product [Enterobacteria phage Ike]
          Length = 437

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 101/245 (41%), Gaps = 12/245 (4%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +  +++A  DQV ++  + E        + F                +  G    + GG 
Sbjct: 198 ITSIDVA-RDQVLIQSLMFETSLVNGVDLSFAAGSASGDKVAGGFNTSALGTALSTAGGS 256

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298
           F   G+ +       + A++  +  + ++ P +   SGQ+   + G    + T       
Sbjct: 257 F---GIFNGNVLALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVTGEA 313

Query: 299 -SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            + +    ++   D GV L  TP V+  G++ L I T+       + A D+ +   R   
Sbjct: 314 ANVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQMTASDIIT-NQRHMQ 372

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTV++  G T++L GL+  +       +P    +P++G LFR+   +  E  +F+  T  
Sbjct: 373 TTVQIKDGQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAH 432

Query: 418 LVKPV 422
           ++K +
Sbjct: 433 VIKAL 437


>gi|58091874|gb|AAW65366.1| gene IV protein [synthetic construct]
          Length = 437

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 101/245 (41%), Gaps = 12/245 (4%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +  +++A  DQV ++  + E        + F                +  G    + GG 
Sbjct: 198 ITSIDVA-RDQVLIQSLMFETSLVNGVDLSFAAGSASGDKVAGGFNTSALGTALSTAGGS 256

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298
           F   G+ +       + A++  +  + ++ P +   SGQ+   + G    + T       
Sbjct: 257 F---GIFNGNVLALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVTGEA 313

Query: 299 -SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            + +    ++   D GV L  TP V+  G++ L I T+       + A D+ +   R   
Sbjct: 314 ANVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQMTASDIIT-NQRHMQ 372

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTV++  G T++L GL+  +       +P    +P++G LFR+   +  E  +F+  T  
Sbjct: 373 TTVQIKDGQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAH 432

Query: 418 LVKPV 422
           ++K +
Sbjct: 433 VIKAL 437


>gi|313202169|ref|YP_004040827.1| type IV pilus secretin pilq [Methylovorus sp. MP688]
 gi|312441485|gb|ADQ85591.1| type IV pilus secretin PilQ [Methylovorus sp. MP688]
          Length = 714

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 117/342 (34%), Gaps = 63/342 (18%)

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
             +L+  + D   ++     + VL     T+     A  L E                ++
Sbjct: 387 AESLKNILTDEKQKILSKRGSAVLDPRTNTVFVQDTAKHLEEI---------------QQ 431

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++N  +I    QV ++  +        K +G +  +T  S+          G +      
Sbjct: 432 IINKTDIP-VKQVMIESRLVIADEKFGKSLGARFGMTQQSADGRNVIGGTLGNRITEVSS 490

Query: 244 DFSVK---------------------GVLDRFSFETVLHA-------------------- 262
           D ++                      G  D  S   V +A                    
Sbjct: 491 DGTITQGTHNGTIQTATTGSTATSSDGEPDLMSNLPVSNAYGNLAFTLLRLPAGLLLNLE 550

Query: 263 ---LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
              LE     + ++ P +T  + + A    G +  Y   SSS GATSV   D  + L  T
Sbjct: 551 LSALETDKRGKVVSSPRVTTANQKKAQIQQGTKIPYLRASSS-GATSVQFVDATLSLEVT 609

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P V    +I + +  +     +G     +PS   +  DT V + +G T VL G+ +   +
Sbjct: 610 PQVTPDDKIIMDLTIKKDR--VGQIFSGVPSIETQSVDTQVLVSNGETAVLGGIYEQTER 667

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              + +P    +P +G  F+      ++TE+ I  TP ++  
Sbjct: 668 NDVDKVPFFGDLPFVGNAFKRRVRQNDKTELLIFITPKIMDD 709


>gi|332186824|ref|ZP_08388566.1| general secretion pathway protein D [Sphingomonas sp. S17]
 gi|332013157|gb|EGI55220.1| general secretion pathway protein D [Sphingomonas sp. S17]
          Length = 739

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/352 (20%), Positives = 134/352 (38%), Gaps = 24/352 (6%)

Query: 104 HDGKQMLNLDILIERDIAHLE--MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
             G+    +   +  +   +     ++R I +   ++++  + V++  +V  + D Q A 
Sbjct: 343 QGGRTAAVVTRFVGANAIVIAGPADIQRQIGEVIRQLDVRREQVLIEAIVAEVSD-QTAR 401

Query: 162 ELSETFL--SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            L   FL  S SG    A++      N+L IAG     +        R I+       + 
Sbjct: 402 RLGAQFLLGSLSGGAFAASTYGNTAPNILQIAGA----VGAQTLGGTRTIVTAPDGTRTE 457

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           T   +              +   G F    G +    F  +++A++  T    L  P + 
Sbjct: 458 TNVPNPAFSQLTQSAVQSILGTTGGFAGWGGQVGDTVFGAIINAVKSDTTSNLLQVPHII 517

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            +  Q A    G +    T  + +        +V   + G+ L   P V + G + L ++
Sbjct: 518 TLDNQQAHSLVGQEIPVTTGQALSNNFDNAFRTVQRQNVGIQLDVKPQVNAGGSLKLYVR 577

Query: 334 TEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            EVS     V++ +       R  +       G   V+ GLL D+ ++  E IPLL  IP
Sbjct: 578 LEVSSIAGPVSSNNSELILNKRAFENVFTPDDGQITVIGGLLDDNERRTIEKIPLLGDIP 637

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
            LGALFR+   +R +T + +   P +++         P+D   V +    + 
Sbjct: 638 GLGALFRSKARSRSKTNLMVFIRPTILR--------TPEDSRRVTEQRYGYL 681


>gi|297538460|ref|YP_003674229.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
 gi|297257807|gb|ADI29652.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
          Length = 589

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 108/322 (33%), Gaps = 49/322 (15%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L+G+V      +  V +    +           + +  + L+ +  E QV L+  I  V+
Sbjct: 230 LNGIVGNENGHRVVVNVQSGVIMVRAMP-AEVRNVEAFLRLMQVTIERQVILEAKIMNVQ 288

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA---------------------ADFGGKFVSEGGDF 245
            +   Q G   S+ G S   +                         +   G  ++     
Sbjct: 289 LNDQSQSGVNWSVFGKSGSNTGIVGNLNAKTTLGRAGNGDVTSGDLSASSGNVIANTATT 348

Query: 246 SVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           ++ G      L   +F  +L  LE    ++ L+ P +  I+ Q A    G    + T  S
Sbjct: 349 ALGGPLFAVALQGANFAALLSFLETQGDVQVLSSPRIATINNQKAVLKVGTDEFFVTGIS 408

Query: 301 STGA-----------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------- 341
           S               ++     G+ L  TP +     I L +   +S+           
Sbjct: 409 SNTTASTGATTTSPEVTLQPFFSGIALDVTPQIDKDDNIILHMHPSISQVTTVNKQLNLG 468

Query: 342 GVNAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           GV+      + S  V + D+ V    G  I + GL+ +     K  +P L  I  +G  F
Sbjct: 469 GVSGNINLPLASSNVSETDSIVRTHDGRVIAIGGLMTESSISNKSKVPGLGDIKGVGNAF 528

Query: 399 RNSRFNREETEIFIAATPFLVK 420
           R       +TE+ I     +V+
Sbjct: 529 RQKGSTSSKTELVILLKATVVQ 550


>gi|300690947|ref|YP_003751942.1| type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum PSI07]
 gi|299078007|emb|CBJ50649.1| putative type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum PSI07]
          Length = 759

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/409 (20%), Positives = 153/409 (37%), Gaps = 49/409 (11%)

Query: 51  SIGLNKVIILQVPVDVQD-VLVSDPTKADVV--VHSPRTMYLFGKNV--GQANVILIGHD 105
           S G+N ++   V  D++  V +      D +  + S   +    K +  G   +I     
Sbjct: 204 STGINFILDKDVRPDLKTTVFIRQAKLEDALDLILSTTQL---NKKMMNGSTILIYPNTP 260

Query: 106 GKQMLNLDILI------ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            KQ    D+++        D       L+  +   +  ++  ++ VV+        +S  
Sbjct: 261 EKQRDYQDLVVRAFYLTNADAKQTGAMLKAMLKIRDPYIDERTNMVVIR-------ESPD 313

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            V L+E  +    RN        +V+ +                      L Q+G Q+  
Sbjct: 314 VVRLAERLVELQDRNDSEVVLEVEVLEV------------------SSTKLTQLGVQYPN 355

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           + + +  S + A       +S+    +   +    +   VL+          LA P + A
Sbjct: 356 SFTLTPLSATGATSL---TLSDFKGLNSDRI-GVSTPNVVLNLRRELGDTDLLANPKIRA 411

Query: 280 ISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            + + A    G +    T +S++    + SV   D G+ L   P++     + ++I  EV
Sbjct: 412 KNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEVSMKINLEV 471

Query: 337 SEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           S     +             R A+T ++L  G T +LAGL+K         IP L  IP+
Sbjct: 472 SSLTNQITTRSGTVAYQIGTRTANTVLKLHDGETQLLAGLIKTQQTSSAARIPGLGDIPL 531

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           LG LF +   N    EI ++ TP +VKP    D +  +     E +A+A
Sbjct: 532 LGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPDTNFMEFWSGTETNARA 580


>gi|120602835|ref|YP_967235.1| type II and III secretion system protein [Desulfovibrio vulgaris
           DP4]
 gi|120563064|gb|ABM28808.1| type II and III secretion system protein [Desulfovibrio vulgaris
           DP4]
          Length = 524

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 124/314 (39%), Gaps = 42/314 (13%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAE 204
           L G +   + ++    +     + S   Q       K++ L+N   +   Q+ LK  I E
Sbjct: 203 LEGFLSKDEQNKPVGAVVVDTHTNSLIVQAVEDDLSKIITLVNNLDKPRAQILLKAHIVE 262

Query: 205 VRRDILKQIGFQHSITGSS---------------SGPSKSFAADFGGKF--VSEGG---- 243
             RD  + +G Q    G S               SGP+K      GG    +  GG    
Sbjct: 263 ATRDTARDLGIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVPVIPPGGLSGQ 322

Query: 244 ----DFSVK--------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
               +F V               G +     E  L AL+    +  L+ P+++ +  Q A
Sbjct: 323 GFGMNFPVNKAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSPSISTLDNQMA 382

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
              +G +  Y   +++ G   V   D  + L  TP V+    + L++Q +  E  +    
Sbjct: 383 FTENGEKVPY-VSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLTRTV 441

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P    ++ +TT+ +  G T+V++GL K+     ++G+P L  +  +GALF N     
Sbjct: 442 EGNPFIIKKQTETTLIVQDGETVVISGLTKERSSSRRQGLPYLQDVEGIGALFGNDSKAN 501

Query: 406 EETEIFIAATPFLV 419
           +  ++ I  TP ++
Sbjct: 502 KLEDVLIFITPAIL 515


>gi|171319027|ref|ZP_02908154.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
 gi|171095782|gb|EDT40735.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
          Length = 633

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 13/248 (5%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-------SSGPSKSFAADF 234
           + V+  L++   + V ++  I +V+   LK+IGF  ++ GS       +SG         
Sbjct: 317 EDVVRDLDV-EPELVQIEAAIIDVQDGALKEIGFDWALQGSQFRIASTTSGAGIGRDLGN 375

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             +    G +FS+ G     SF + +HAL+       L+ P L  ++G  A  T+     
Sbjct: 376 ADRVRGNGPNFSIFGGSSALSFLSRIHALQTEGKASVLSRPKLATLNGIEAVLTNQQVFY 435

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL--SPGRIGLRIQTEVSEPVIGVN-AGDMPSY 351
            +   S+     +   D G+ +   P V+  S G+  +R+Q  + +  +G      +P  
Sbjct: 436 PRV--SNERVAQLYQVDVGLQMRVVPAVVRRSDGKADIRLQVFIEDGSLGSQRVDGLPVT 493

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   + +G ++++ G ++D   + +  +PLL  IP+LGALFR      +  E  
Sbjct: 494 SKSAITTQALVRNGESLLIGGYVRDVNDRGEAKVPLLGDIPLLGALFRFRSTQTDRQERL 553

Query: 412 IAATPFLV 419
              TP L+
Sbjct: 554 FLITPKLL 561


>gi|82703698|ref|YP_413264.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
 gi|82411763|gb|ABB75872.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
          Length = 749

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 151/386 (39%), Gaps = 36/386 (9%)

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           DV   S  T+++      + N+            L +  +     L         ++  +
Sbjct: 212 DVKQDSKTTIFVR-----ETNI------EDVFKLLLVTNQLAHKVLNENSVLIYPNTPAK 260

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVEL-----SETFLSQSGRNQYANSSSKKVMNL----- 187
            +   + +V    V      Q    +     ++        N +    + + + L     
Sbjct: 261 QKEYQELMVRSFFVTNTDVKQMVAMVKGLIKTKDMHVDEKLNLFVMKDTPEAIRLAERLV 320

Query: 188 -LNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFGGKFV 239
            LN   + +V L+V + E+ R+ L  +G Q+        +T +S+  +  F      +  
Sbjct: 321 TLNDLADPEVMLEVEVLEIGRNKLLNLGLQYPEKINVNYLTAASAAGAAPFPPFQISRAG 380

Query: 240 SEGGDFSVKGVLDRFSFETVL-HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
             G   ++  ++   +   ++ +  ++   I  LA P +   + + A    G +    T 
Sbjct: 381 VNGNGSNLDNLIGFVANPALIVNLKQQDGLINVLANPRIRVKNREKAKVLIGDKVPVVTT 440

Query: 299 SSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYR 352
           +++     A+SV+  D G+ L    T+     + +++  EVS  V  V     G      
Sbjct: 441 TAAANVGVASSVSYLDVGLKLDVESTISLQDEVSMKVSLEVSNIVKEVPVTGGGLAYQVG 500

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A TT+ L  G T VLAGL+ DD +     +P L+++P +G LF N    R +TEI +
Sbjct: 501 TRTAATTLALKDGETQVLAGLISDDERTTLSKVPGLAELPWIGKLFINKNVVRNKTEIAL 560

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVED 438
             TP +V+ +A    +  +  +  E+
Sbjct: 561 LITPRIVRNIARPAKAVSEVPFGTEN 586


>gi|254785258|ref|YP_003072686.1| MSHA type biogenesis protein, MshL [Teredinibacter turnerae T7901]
 gi|237687142|gb|ACR14406.1| MSHA type biogenesis protein, MshL [Teredinibacter turnerae T7901]
          Length = 570

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 110/287 (38%), Gaps = 25/287 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----GSSSGPSKSFAADF 234
           S+ +  +    ++   QV L+  I EV+ +   + G          G +S  S     + 
Sbjct: 278 SAVRDFLERSELSVRRQVVLETKIIEVQLNDGYEAGVNWGAITGALGVASDSSLVMTNND 337

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           G K         + GVL+    E +L+ LE    ++ L+ P ++ ++ Q A    G    
Sbjct: 338 GVKSKIRTTQNLLSGVLNVTRIEDLLNLLETQGNVQVLSSPRISTVNNQKAIIRVGTDEF 397

Query: 295 YKTVS-----------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           + T              ++    + +   G+ L  TP +   G + + +   VS+    +
Sbjct: 398 FVTGITNNTTTTASNIQNSPEVLLDSFFSGIALDVTPQIAEDGDVIIHVHPLVSKVQDQL 457

Query: 344 NAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
               +             VR++D+ V   +G  +VL GL+++    +    P L  IP +
Sbjct: 458 KDISIGDLDYSLPLALRDVRESDSIVRASNGQVVVLGGLMQETTSDVATKRPFLGDIPGV 517

Query: 395 GALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVEDDA 440
             LF+     + +TE+ I   P +V +      ++R D       +A
Sbjct: 518 NVLFKGRAKRKVKTELVILMRPIVVDENTWEEQVNRSDRAIEAMSNA 564


>gi|196233728|ref|ZP_03132568.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
 gi|196222242|gb|EDY16772.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
          Length = 621

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 98/289 (33%), Gaps = 59/289 (20%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------- 242
           +   QV ++  + EV  +  +  G     T  SS   ++F+        S+         
Sbjct: 257 SPTQQVMIEARLVEVTANPKQSYGINWGGTVGSSSTPQTFSYGAPTVPGSQSVNLQTNPT 316

Query: 243 -------------------------GDFSVKG---------------VLDRFSFETVLHA 262
                                    GDF + G               +L   S    L  
Sbjct: 317 TGQVTPVIVNSQLPQLVTTNGKLTPGDFLMNGETRGGFGDLLASQFAILTVPSMSATLRL 376

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLH 317
           L   +    LA P +   + Q A+           ++ +              ++G  L 
Sbjct: 377 LNEDSDAEFLAHPRVVTANNQKATIKIVRNQPIPQLNFNEQTAQAVFSGFQDKEFGNTLI 436

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN------AGDMPSYRVRKADTTVELPSGGTIVLA 371
            TP++     I + +Q E+S  V              P    R  D+ V + SG T+ + 
Sbjct: 437 VTPSINKDDFISMSVQPEISNKVADATFTFSGATVTSPVIDKRTLDSNVVIKSGDTLAIG 496

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           GLL+D++ + +  +P++  IPILG  F+     R +  + I  TP ++K
Sbjct: 497 GLLQDEVTKGRTKVPVIGDIPILGYAFQERLNVRTKRNLLIFVTPTIIK 545


>gi|325521797|gb|EGD00533.1| putative type IV pilus secretin [Burkholderia sp. TJI49]
          Length = 215

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 3/185 (1%)

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G F +    F++         +  L ALE     + ++ P +       A    G +  Y
Sbjct: 2   GGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRAKAIVEQGAELPY 61

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           +      G + V      + L   P +   GR+ L +  +V++  +G      P+   + 
Sbjct: 62  Q-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKH 118

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T VE+  GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  T
Sbjct: 119 VQTRVEVEDGGTVAIGGIYERLRRDDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFIT 178

Query: 416 PFLVK 420
           P +V+
Sbjct: 179 PTVVR 183


>gi|46579684|ref|YP_010492.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449099|gb|AAS95751.1| bacterial type II/III secretion system protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233480|gb|ADP86334.1| type II and III secretion system protein [Desulfovibrio vulgaris
           RCH1]
          Length = 524

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 124/314 (39%), Gaps = 42/314 (13%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAE 204
           L G +   + ++    +     + S   Q       K++ L+N   +   Q+ LK  I E
Sbjct: 203 LEGFLSKDEQNKPVGAVVVDTHTNSLIVQAVEDDLSKIITLVNNLDKPRAQILLKAHIVE 262

Query: 205 VRRDILKQIGFQHSITGSS---------------SGPSKSFAADFGGKF--VSEGG---- 243
             RD  + +G Q    G S               SGP+K      GG    +  GG    
Sbjct: 263 ATRDTARDLGIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVPVIPPGGLSGQ 322

Query: 244 ----DFSVK--------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
               +F V               G +     E  L AL+    +  L+ P+++ +  Q A
Sbjct: 323 GFGMNFPVNKAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSPSISTLDNQMA 382

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
              +G +  Y   +++ G   V   D  + L  TP V+    + L++Q +  E  +    
Sbjct: 383 FTENGEKVPY-VSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLTRTV 441

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P    ++ +TT+ +  G T+V++GL K+     ++G+P L  +  +GALF N     
Sbjct: 442 EGNPFIIKKQTETTLIVQDGETVVISGLTKERSSTRRQGLPYLQDVEGIGALFGNDSKAN 501

Query: 406 EETEIFIAATPFLV 419
           +  ++ I  TP ++
Sbjct: 502 KLEDVLIFITPAIL 515


>gi|289679098|ref|ZP_06499988.1| general secretion pathway protein D [Pseudomonas syringae pv.
           syringae FF5]
          Length = 221

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 11/192 (5%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT 308
           + +  L ALE     + L+ P+L  ++ Q A    G        S +T         SV 
Sbjct: 18  NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVE 77

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSG 365
               GV+L   P +   G + + IQ +VS      N   A   P    R   T V   SG
Sbjct: 78  YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNANNSDANGNPRISTRSVATQVAAQSG 137

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++   +  
Sbjct: 138 QTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSS 195

Query: 426 DLSRPDDHYSVE 437
              +  D Y  +
Sbjct: 196 QARQVTDDYRQQ 207


>gi|254459101|ref|ZP_05072524.1| type II and III secretion system protein [Campylobacterales
           bacterium GD 1]
 gi|207084372|gb|EDZ61661.1| type II and III secretion system protein [Campylobacterales
           bacterium GD 1]
          Length = 551

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 114/288 (39%), Gaps = 31/288 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADF 234
           +  +  L    + QV + V +  V  +  K  G           +T S++  SK+    F
Sbjct: 226 EGYLKKLQDKVQLQVLIDVQLLSVTMEEGKTTGVDWQQLYALQKVTLSANYLSKNNVPTF 285

Query: 235 GGKFVSEGGD-----FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            G  ++  G       S+  V    + + V+  L+    + +++ P +  ++ Q A  T+
Sbjct: 286 TGTEITTAGAQAVNEASLVTVKAGGTLDEVIKFLQTQGDVVSISNPKVLTLNNQPALITA 345

Query: 290 GGQHLYKT------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           G ++ YK             V+++T   +V +   GV+L  TP +     I L+I   +S
Sbjct: 346 GTEYFYKIKSETNQQGTGGGVAATTQNDTVQSVFAGVLLDITPEIADDKSITLKINPSLS 405

Query: 338 EPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           E    ++          P    R+  + V +  G  I+L GL+          +PLL  I
Sbjct: 406 ETAQDISQESSANRVMPPDLNRRQLSSVVTVKDGNRIILGGLINTKNVNKSNKVPLLGDI 465

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
           P L  LF+     ++  E+ I   P ++   A  +LS  +  Y    D
Sbjct: 466 PGLSYLFKYEEMTKQIQELVIVIEPHII-DKANNNLSLAELGYKGITD 512


>gi|148652211|ref|YP_001279304.1| type IV pilus secretin PilQ [Psychrobacter sp. PRwf-1]
 gi|148571295|gb|ABQ93354.1| type IV pilus secretin PilQ [Psychrobacter sp. PRwf-1]
          Length = 642

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 99/276 (35%), Gaps = 43/276 (15%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++  ++I    QV ++V +     +  K++G +  +       +         + +++  
Sbjct: 369 LIKQIDIP-VRQVMIEVRMVSATDNFSKEMGVKWGLLSKGVAHNDDLLVGASDQTLADLK 427

Query: 244 DFSVKGVL---------------------------------------DRFSFETVLHALE 264
            FS                                                 +  L A++
Sbjct: 428 SFSAPNTAYKGRNKSRAGYAITRPDNLNVDLGISNPAGRIAFGLLSMSDLMIDLELSAMQ 487

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                  ++ P +  +  Q+A+ +SG +  Y++  S  G T+    +  + L  TP++  
Sbjct: 488 AEGRGEVISTPKILTLDKQTATVSSGTKIPYQS-ESEGGGTTTQFEEALLSLQVTPSITP 546

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             +I L++  E   P        +      +  T V +  G T+VL G+ ++ I    + 
Sbjct: 547 EDKISLQLNIENGRP--NPVGNGVILIDTDRLITRVTVGDGQTLVLGGIYRNQIFNNTQK 604

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P    +P +G LF+      ++ E+ I  TP L++
Sbjct: 605 VPFFGDLPYIGRLFKQDLRRNDQQELLIFVTPKLMQ 640


>gi|88799604|ref|ZP_01115180.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
 gi|88777689|gb|EAR08888.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
          Length = 519

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 104/253 (41%), Gaps = 28/253 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV ++  I EV  D   + G   S    + G   + +A  G    +  G   V GV +
Sbjct: 250 QKQVIIEAKIVEVTLDQEYRSGINWSFFNDNFGSGNN-SAGIGLDGNAISGAGGVGGVFN 308

Query: 253 RF----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ST 302
                 +F ++L  L+    ++ L+ P ++ I+ Q A    G    + T+ S        
Sbjct: 309 LSLSLDNFTSMLQLLDHQGDVQVLSSPRVSTINNQKAVIKVGTDEFFATIQSITTEVNDD 368

Query: 303 GATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---- 350
            + SVTT           G+ L  TP +     + L ++  V+E V      D+      
Sbjct: 369 DSDSVTTVPAFELEQFFSGIALDVTPQIADDDSVTLHVRPTVTEVVEDTKTLDVGGRSYQ 428

Query: 351 -----YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
                  +R++D+ +   SG  +V+ GLL+        G+P    IP++  LF   R ++
Sbjct: 429 LPLAYSNIRESDSIIRAQSGQIVVIGGLLQQKQDLGTTGLPWFQTIPVIRGLFAQDRESQ 488

Query: 406 EETEIFIAATPFL 418
           +++E+ I   P +
Sbjct: 489 QKSELVILLKPTV 501


>gi|153003602|ref|YP_001377927.1| general secretion pathway protein D [Anaeromyxobacter sp. Fw109-5]
 gi|152027175|gb|ABS24943.1| general secretion pathway protein D [Anaeromyxobacter sp. Fw109-5]
          Length = 892

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 129/379 (34%), Gaps = 66/379 (17%)

Query: 132 ADSNIRVEMVSDTVV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
             +         + V      G V+   D Q+   L +        +     + ++++  
Sbjct: 415 PGAPPSARPGGASDVTASLFSGDVKITADKQQNALLVQA-------SGADFQAIQRLVEK 467

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGF------------QHSITGSSSGPSKSFAADFG 235
           L+     QV ++  I EV      Q G                    SS P +  + D  
Sbjct: 468 LD-RPRRQVFVEAVIMEVNLRDETQFGVGAHGIVPVDYRGDEGFIPISSQPGRVSSFDVT 526

Query: 236 GKFVSEGGDFSVKGVLDRF----------SFETVLHALERATAIRTLAEPTLTAISGQSA 285
                 G    + G               S   ++ AL+ +  +  L+ P + A   + +
Sbjct: 527 SAISLGGFLTGLNGPPSGVVEDLLGIKVPSLGVIVQALQSSADVNVLSTPHILASDNEES 586

Query: 286 SFTSGGQHLYKTVSSSTG-----------------------ATSVTTHDYGVVLHFTPTV 322
             T G    ++   +  G                          +   +  + L   P +
Sbjct: 587 EITVGQNVPFQAGYAPAGLGNLLTGTTATTSTLGLGGLSSLVAPIQRQNVELRLKIKPQI 646

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
              G I L I+ E +E ++  +    P+   R A T +      TIV+ GL+++   +  
Sbjct: 647 NEGGNIRLTIE-EQTEEIVDRDPQLGPTTAKRTAKTQIVAKDQSTIVIGGLIQERNVRSV 705

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
             IP+L  +PILG LFR+S   ++ T + +  TP++++           D+  + +  + 
Sbjct: 706 RKIPVLGSLPILGWLFRDSTNTKQRTNLLLFLTPYIIRD--------ETDYRRIYERKRK 757

Query: 443 FFFNRVNKIYGPKEASEVE 461
                V + YG + + +V 
Sbjct: 758 EQQEFVEQFYGRQPSYQVA 776


>gi|22127358|ref|NP_670781.1| hypothetical protein y3484 [Yersinia pestis KIM 10]
 gi|108809090|ref|YP_653006.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua]
 gi|108810716|ref|YP_646483.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516]
 gi|145597787|ref|YP_001161863.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F]
 gi|167466374|ref|ZP_02331078.1| hypothetical protein YpesF_00430 [Yersinia pestis FV-1]
 gi|229837375|ref|ZP_04457538.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Pestoides A]
 gi|229840587|ref|ZP_04460746.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842863|ref|ZP_04463015.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900911|ref|ZP_04516035.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Nepal516]
 gi|294502759|ref|YP_003566821.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003]
 gi|21960442|gb|AAM87032.1|AE013951_7 hypothetical [Yersinia pestis KIM 10]
 gi|108774364|gb|ABG16883.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516]
 gi|108781003|gb|ABG15061.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua]
 gi|145209483|gb|ABP38890.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F]
 gi|229682250|gb|EEO78342.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Nepal516]
 gi|229690130|gb|EEO82187.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696953|gb|EEO87000.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229705498|gb|EEO91508.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Pestoides A]
 gi|262360791|gb|ACY57512.1| hypothetical protein YPD4_0603 [Yersinia pestis D106004]
 gi|262364736|gb|ACY61293.1| hypothetical protein YPD8_0603 [Yersinia pestis D182038]
 gi|294353218|gb|ADE63559.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003]
 gi|320016744|gb|ADW00316.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 284

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 110/271 (40%), Gaps = 26/271 (9%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              K+I + +    I++V  ++  V VS    AD  +    ++ ++ K  G A   L   
Sbjct: 30  ANAKQIYLPIGGSHIIKVQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNK 89

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL- 163
           + + +    +L+   I      +R    DS I +  + ++ +L G   T +       + 
Sbjct: 90  NHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIASIV 149

Query: 164 ----SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               +     +   +  +N   + V+N + +   +QV +K+TI E+ +D  + IG   + 
Sbjct: 150 GEATASKKEKERETSYQSNPEYQGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNS 209

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             S++G  +                       +  S  T++HA+      + LAEP L+ 
Sbjct: 210 IKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEPNLSV 250

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +SG+ ASF  GG+     VS++    SV   
Sbjct: 251 LSGEYASFLVGGEIPI--VSTNQNGISVELK 279


>gi|222823425|ref|YP_002574999.1| type II protein secretion system D protein CtsD [Campylobacter lari
           RM2100]
 gi|222538647|gb|ACM63748.1| putative type II protein secretion system D protein CtsD
           [Campylobacter lari RM2100]
          Length = 463

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 114/281 (40%), Gaps = 24/281 (8%)

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
           Y  +  +K +  LN   + QV + V+I  V  +     G            +     D  
Sbjct: 190 YELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQ------DLAFKLNGDDN 243

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              +++GG  ++  +      + +L+ L+       L+ P L A++ Q A  + G    Y
Sbjct: 244 DFIINKGGVKNIN-LKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINY 302

Query: 296 KTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA- 345
           +   SS G  + TT            G++L+  P +    +I LRI   +S+    V+  
Sbjct: 303 QVKESSKGTENGTTISETYNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNH 362

Query: 346 ------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                    P    +K  T VE+  G T++L GL+  +       +  LSKIP+ GALF+
Sbjct: 363 RQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKNTISNHNEVSALSKIPLFGALFQ 422

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
             +   + +EI     P L++    + LS  +  +  EDD 
Sbjct: 423 GKQNLEDISEIVFIIKPSLIR-ADKKVLSLKELGFEHEDDM 462


>gi|257459465|ref|ZP_05624574.1| type II and III secretion system protein [Campylobacter gracilis
           RM3268]
 gi|257442890|gb|EEV18024.1| type II and III secretion system protein [Campylobacter gracilis
           RM3268]
          Length = 502

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 117/304 (38%), Gaps = 27/304 (8%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           +V+ +G  + +  +    + +      + ++Q A     + ++ +      QV L V I 
Sbjct: 180 SVLNNGTEKYVAVAPIINQNAGLVTVTAMKSQIAR--VDRYLSGMQKRLSRQVLLDVNII 237

Query: 204 EVRRDILKQIGFQHS---------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            V  +     G   S         + G  +  S     +      S+       G    F
Sbjct: 238 SVELNNEYTTGIDWSKFQLGFNTYVGGDPTKLSGYHIDNGNRGKASDTHGTWTIGANLNF 297

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311
           + + +++ LE     + ++ P +T ++ Q A  + G    Y   S++TG        + D
Sbjct: 298 NIDGLINFLETKGKTKIISSPKVTTMNNQPAIISVGDTINYVLKSTTTGDYQGGDTQSDD 357

Query: 312 -----YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--------GDMPSYRVRKADT 358
                 G++L+  P +    RI LRI   +S      +            P    +K  +
Sbjct: 358 QYSIFVGILLNILPEISDDNRIMLRINPSLSSLKYAEDNVRKENGRRDIAPDTLQKKLSS 417

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V +  G T++L GL+     +    +P+L++IP++G LF+++      +E+    TP +
Sbjct: 418 VVWVDDGDTVILGGLIGATKSKNNTRVPVLAEIPLIGNLFKSTADILSTSELIFVVTPHI 477

Query: 419 VKPV 422
           +   
Sbjct: 478 IDNT 481


>gi|281354921|ref|ZP_06241415.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281317801|gb|EFB01821.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 794

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 107/251 (42%), Gaps = 14/251 (5%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----GK 237
           K +++ L++    QV  ++ I E+      + G Q +      G   S   +F       
Sbjct: 486 KALLDRLDVV-PAQVLFQILIVEITLTDSNEFGLQFNNVSYGGGTGVSTGTNFNDIGMND 544

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
             SEG    +    +       L AL     I+ ++ P L   S  +A    G       
Sbjct: 545 SSSEGFKLGIFDKDNPEENFGYLRALAGRDNIKVISSPQLLVTSNTTAKIQVGQDVPILT 604

Query: 296 ---KTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDM 348
               T  S+TG  +   T  + G++L   P V S   I ++I+ +VSE +     +A D 
Sbjct: 605 QDLTTSDSATGNVTRSYTYEETGIILSLIPQVTSTDLISMQIEQKVSEAIKNTITSATDT 664

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P    R  +T + + +G T+V+ G++++      + +P+++ IP L   F N+  + E T
Sbjct: 665 PVISTRVLNTAMTIANGKTMVIGGMIQEKNNDRLQSVPIIADIPFLRRFFGNTNQSVERT 724

Query: 409 EIFIAATPFLV 419
           E+ +  T ++V
Sbjct: 725 ELLVLVTGYIV 735


>gi|297171846|gb|ADI22835.1| type II secretory pathway, component PulD [uncultured nuHF2 cluster
           bacterium HF0500_31B05]
          Length = 815

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 121/287 (42%), Gaps = 27/287 (9%)

Query: 174 NQYANSSSKKVMNLLNI---AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
           ++    + +K++N+L+        Q+ ++  + EV  + L+ IG +  +TGS +    SF
Sbjct: 254 DKNEPEALEKLINVLHTQIDVPAQQIFIEALVIEVNTNRLRDIGVE--LTGSKNHVQGSF 311

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
               G    +    FS +   D  S +  L AL        L+ P++  ++ + A    G
Sbjct: 312 ERSEGNPLTTL--LFSRESFTDFLSLKGKLEALVEIGDAEILSSPSVLVLNDRQARVQVG 369

Query: 291 GQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPV------ 340
            Q      ++ T  T+V        G+VL+  P +      + ++I+T +S         
Sbjct: 370 RQIPIVRSTTPTAGTTVKGIEYFPIGIVLNLRPRINLDQSQVTIQIETIISSISTESATK 429

Query: 341 ----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
               +  +    P    R  +T V +  G   ++ GLL  +  + K G+P LS +P LG 
Sbjct: 430 LEDGVSEDISFAPIVDNRLVETYVRVADGTPFIIGGLLSTERLESKVGVPFLSAVPFLGH 489

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           LF   R    + E+ +  TP +V P+  R+ S     Y +  D+  F
Sbjct: 490 LFSRKRVENTQREVIVVITPHIV-PLETRNFS-----YLIPKDSDLF 530


>gi|74316782|ref|YP_314522.1| general secretion pathway protein D [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056277|gb|AAZ96717.1| general secretion pathway protein D [Thiobacillus denitrificans
           ATCC 25259]
          Length = 554

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 111/284 (39%), Gaps = 44/284 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------------ITG 221
           ++ +    +A E QV L+  I EVR     Q G   +                    +TG
Sbjct: 250 ERFLKATALAVERQVMLEAKIIEVRLSDGFQTGINWAALHEGRHKYSSGADAGNFNLVTG 309

Query: 222 SSSGPSKS-FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           ++SG   S   +       + GG F +       SF  +++ LE   A+  L+ P + A+
Sbjct: 310 AASGSLGSVLGSGLPAASGTSGGIFGLA--FQTKSFAALINFLETQGAVHVLSSPRIAAL 367

Query: 281 SGQSASFTSGGQHLYKTVSSST-----------GATSVTTHDYGVVLHFTPTVLSPGRIG 329
           + Q A    G    + T  S+T            + ++     G+ L  TP +   GRI 
Sbjct: 368 NNQKAVLKVGTDDFFVTNVSTTSNTGGAGTTTTPSVTLQPFFSGIALDVTPQIDERGRIT 427

Query: 330 LRIQTEVSEPVIGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           L ++  VS     +   D          + S  V + D+ V++  G  + + G++K    
Sbjct: 428 LHVRPSVSVVTEKIKNIDAGAAGSLTLPLASSAVSETDSVVQVEDGRIVAIGGMMKQSFD 487

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
                +P + ++P+LG  F N+  +  ++E+ I   P ++    
Sbjct: 488 DSANRVPAIGRVPLLGYFFGNTARSASKSELVILIKPTVIDSQE 531


>gi|238025976|ref|YP_002910207.1| type II/III secretion system protein [Burkholderia glumae BGR1]
 gi|237875170|gb|ACR27503.1| Type II/III secretion system protein [Burkholderia glumae BGR1]
          Length = 649

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 78/474 (16%), Positives = 155/474 (32%), Gaps = 93/474 (19%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
            P +    P++ + A         +   ++IS+ L +         +  V        D 
Sbjct: 174 GPPITMPAPVRLSAAPASVHGSHGLHGHRRISLDLQQA-------PLAAVF-------DA 219

Query: 80  VVH-SPRTMYLFGKNVGQANV------------ILIGHDGKQMLNL--DILIERDIAHLE 124
               + +++ L G+  G A +             L+  +G  M      I +   +A L 
Sbjct: 220 FARFTGQSIVLSGRVQGAATLRLRDVPWRDAFDALLDANGLAMARRGGVIWVAP-VAELA 278

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
              R    +++ R   +        ++R  +    A  L+     Q   ++  +  +   
Sbjct: 279 ARERARF-ETHARTAALEPLASRAFVLRYPRAKDVARLLTGGAAGQRVLSRRGSVLADPR 337

Query: 185 MNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--- 223
            NLL +                      QV ++  I E  R   +++G + ++  S+   
Sbjct: 338 TNLLFVTDLDGRLAQIAALLAQLDRPSRQVLIEARIVEGERGFSRELGARLALRSSAWGG 397

Query: 224 ---------------------------SGPSKSFAADFGGKFV-----------SEGGDF 245
                                       G +       GG+ +           +     
Sbjct: 398 SRAGAGAGGSGGSDGGAGGAAMPDSNPGGAATGIVGGPGGRLLDLSARPLAGFEAATAGL 457

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           ++         +  L ALE     R ++ P +       A    G +  Y+      G +
Sbjct: 458 TLFVAGASRLLDLELSALEAQGRGRIVSSPRIVTADRAPALIEQGTELPYQ-AKVGLGVS 516

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
            V      + L   P +   G + L +           +AG  P+   +   T VE+ +G
Sbjct: 517 GVQFRRATLKLEVEPQITPEGHVVLDLDVAKDSVGESTDAG--PAIHTKHVRTRVEIENG 574

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GT+ + G+ + D +     +P+L KIP+LGALFR+    +   E+ +  TP +V
Sbjct: 575 GTVSIGGIYESDRRDDVTRVPVLGKIPMLGALFRHRARRQRTAELVVYITPRVV 628


>gi|162457505|ref|YP_001619872.1| general secretion pahtway protein D [Sorangium cellulosum 'So ce
           56']
 gi|161168087|emb|CAN99392.1| general secretion pahtway protein D [Sorangium cellulosum 'So ce
           56']
          Length = 864

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 103/296 (34%), Gaps = 55/296 (18%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+     QV ++  I +V        G  +      +G +   +  +GG  + +
Sbjct: 438 RAVIDELDEP-RRQVFIEAVIMDVNVSRSLDFGIGYHAGAPFNGLNPDDSVVYGGNNIRQ 496

Query: 242 ----------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                                 G +  +   +   +F  VLHAL +      LA P + A
Sbjct: 497 SVIGLPAQLGALALGIKGPAITGSNNILGTGISIPAFGVVLHALAQDGDSNVLATPHILA 556

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVT------------------------------- 308
               +A  + G     +T     G   +                                
Sbjct: 557 TDNVAAEISIGQNIPLQTNVGGGGLNQLASLAGGAGAAAGGLGGLAGLLGGLGGVGGTAA 616

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGT 367
             D G  +   P V    ++ L +  E+S+    +           R A TT+ +    T
Sbjct: 617 RQDVGTKIKVVPHVNDSDQVRLELSEEISDAGAPLEGALGAIPINKRTASTTLVVRDQQT 676

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +V+ GL++D +   +  IP+L  IP+LG LFR     + +T + +  TP++++   
Sbjct: 677 VVIGGLMRDGMTTSETKIPVLGDIPVLGFLFRQRVKTKTKTNLLLVLTPYVIRDQD 732


>gi|257454916|ref|ZP_05620164.1| fimbrial assembly protein PilQ [Enhydrobacter aerosaccus SK60]
 gi|257447626|gb|EEV22621.1| fimbrial assembly protein PilQ [Enhydrobacter aerosaccus SK60]
          Length = 776

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 102/281 (36%), Gaps = 42/281 (14%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S+ + +++ ++IA   QV ++  I        K++G +  I    +  +++         
Sbjct: 497 SNIRDLISKIDIA-VKQVMIEARIVSATDTFSKELGVKWGILSQGAASNRNLLVGGNLST 555

Query: 239 VSEGGDFSVK------------GVLDRFSFETVL-------------------------H 261
           +     ++              G+    +    L                          
Sbjct: 556 IDSLKTYTTATNSDGTTYPVYSGITAANNLSVNLGATNAAGSIAFGLLSISDLLLDLELS 615

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           A++       ++ P +     Q+A   SG Q  Y+  S+S GATS +  +  + L  TP 
Sbjct: 616 AMQADNKGEVISSPKVLTADKQTARIMSGTQIPYQEASAS-GATSTSFVEAALSLEVTPN 674

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +   GRIG+ +  E   P I        +       T V +  G T+VL G+ K+ +   
Sbjct: 675 ITPEGRIGMDLSIENGSPTI---VNGATAISKDSIKTNVVVDDGQTVVLGGVFKNTLGND 731

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
              IP L  +P +   F+ +  +  + E+ I  TP LV   
Sbjct: 732 VTKIPFLGDLPYVDRFFKRTSKSNNKQELLIFVTPKLVNDT 772


>gi|290968265|ref|ZP_06559808.1| bacterial type II and III secretion system protein [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781747|gb|EFD94332.1| bacterial type II and III secretion system protein [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 394

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 87/455 (19%), Positives = 159/455 (34%), Gaps = 73/455 (16%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKI---SIGLNKV 57
           M+   R     ++   +   P  A    + +A    +     + G    I   S+  N  
Sbjct: 1   MKTCVRVLAIGIAAISWYM-PVSALQVRVSDAPIRTVLEGLAKSGNLNLIIDDSVQGNMT 59

Query: 58  IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD---GKQMLNLDI 114
           + L      Q V        + +  S    Y  G  +G   +I  G +   GKQ     +
Sbjct: 60  LHLDHVTPAQAV--------EAIAASQNLFYDTGSPIG---IITAGRNEEKGKQYYTWQL 108

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
                 A +   ++  +  + ++    S+TVV+     T +++Q   +L +    ++   
Sbjct: 109 KNTTPEAVIRA-IQAVVPAAAVKSYADSNTVVVG---STKREAQLVNKLVQQLDKKTA-- 162

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
                               QV + V I  + R  L + G +       SG    F    
Sbjct: 163 --------------------QVDVAVRIVSLDRKALHKRGIEWDWQPFGSGSQTVF---- 198

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                               S+   + AL        LA P + A +G++A    G +  
Sbjct: 199 --------------------SWLGQIQALSEQGKAEILASPHIMASNGKAAQILIGDRVP 238

Query: 295 YKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
                 + G    S++  + GV L++TP +   G +   I+ EVS PV  V         
Sbjct: 239 VLKEHLANGEKTASISYEEAGVKLNYTPYIHQDGSVTASIEAEVSTPVW-VPEMKAYRIS 297

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+A T V +    T+V+ GL+  +  +    +PLL  IP++G LF++     +ETE+ I
Sbjct: 298 TRRAKTIVRMKPDKTLVIGGLIGKEEMEHFRKVPLLGDIPLVGKLFQSRYKTAKETEVVI 357

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
                 V+      ++   + +   +D K      
Sbjct: 358 MLQARPVQDEEQNTVA--TELFPPIEDEKCLLAGN 390


>gi|254443244|ref|ZP_05056720.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198257552|gb|EDY81860.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 582

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 11/209 (5%)

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            S   D      + G + S   V     F  VL AL+     R ++ PT+  ++ Q A  
Sbjct: 352 SSAVKDLYSLVDTSGLNRSSSAVFTADQFGFVLSALKEQGGSRLVSNPTVVTLNNQEAMI 411

Query: 288 TSGGQHLYK-----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI- 341
           + G Q           +     +     D G++L  TP+V   G I +++  EVS     
Sbjct: 412 SVGEQFPIPNYQYNEETGGFEVSGFEFKDIGIILKVTPSVNHTGLITMKVVPEVSSRTGE 471

Query: 342 ----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
               G     +P    R+ +T + L  G T+ + GL++    + K  +P+L K+P LG L
Sbjct: 472 RSFGGAGNASIPIISTRRTETRIALKDGFTMGIGGLMESTGTEDKNHVPVLGKVPGLGRL 531

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426
           F++   +  +  + I  T  ++ P    D
Sbjct: 532 FKHESKSETKRNLLIFITARIL-PSEEAD 559


>gi|283781428|ref|YP_003372183.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
 gi|283439881|gb|ADB18323.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
          Length = 1314

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 142/382 (37%), Gaps = 59/382 (15%)

Query: 98   NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI---ADSNIRVEMVSDTVVLHGMVRTI 154
            +++  G  G   +   IL+  D   +   +             V    + ++ +    + 
Sbjct: 704  SIVASGTTGDLNVVYQILVRLDEGDIRQRVTTVYRLRNSPAADVATAINELLTNQRDLSQ 763

Query: 155  QDSQRAVELSE-----TFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTIA 203
            Q+++   +  +       + +   N    S++ +  + +             V ++V IA
Sbjct: 764  QNAELTTQFEQFEREVIVVPEIVSNSLIVSATPRYFDEIKKVVEDLDRRPPMVIIQVMIA 823

Query: 204  EVRRDILKQIGFQHSIT---------GSSSGPSKSFAADFGGKFVSEGGDFSVKG----- 249
            EV    ++Q+G +  I          GS   P  + A        S     SV G     
Sbjct: 824  EVLLSDVEQLGVELGIQDSLLFDRGIGSVGFPFNNVALGNNSDATSLATRESVAGQGLSS 883

Query: 250  -----------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                                  S   ++ AL+++  ++ ++ P +  +  Q A    G +
Sbjct: 884  FGVGRTDPTLGYGGLVLSASSESVSVLVRALQQSRRLQVISRPQVQTLDNQPAFVQVGAR 943

Query: 293  HLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVI 341
                T S  T   ++      + G++L  TP     G I + I  E SE        P+ 
Sbjct: 944  VPRITSSQLTVNGTINNTVLENVGIILGVTPRTAPDGMIVMEIDAEKSELGPEAEGIPIS 1003

Query: 342  GVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              + GD+   P  R+  A TTV   SG T+++ GL+  + Q+    +P L  IP+LG LF
Sbjct: 1004 INSNGDVIRSPQIRIATAQTTVSARSGQTVIIGGLITKNQQESTRRVPYLGDIPVLGRLF 1063

Query: 399  RNSRFNREETEIFIAATPFLVK 420
            R    + E  E+ I  TPF+++
Sbjct: 1064 RFDSVSDERRELLIILTPFIMQ 1085


>gi|322418671|ref|YP_004197894.1| type II and III secretion system protein [Geobacter sp. M18]
 gi|320125058|gb|ADW12618.1| type II and III secretion system protein [Geobacter sp. M18]
          Length = 862

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 132/327 (40%), Gaps = 39/327 (11%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           VRT+   ++     E               ++K++   ++   + V L+V + E+ +   
Sbjct: 286 VRTMLQVKKIYVNEEANALVIRDTPEVVEVARKILEANDVPDAE-VLLEVEVFELSKAGT 344

Query: 211 KQIGF---QHSITGSSSGPSKSFAADFG----------------GKFVSEGGDFSVKGVL 251
           +  G     ++ +   +GP   F +D                      +    FSV+G  
Sbjct: 345 ETFGLLLSSYAASMGVTGPQGKFLSDALSTTTTTSTTSGTTTTVADVSNLLNVFSVRGYN 404

Query: 252 DRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--TSVT 308
              +      +  +  +   TL+ P +   + + A F  G +    T SS++     +V 
Sbjct: 405 GYLTVPSATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRVPITTTSSTSTGTSVNVQ 464

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELP 363
             D GV ++  PT+     + +++  EVS       V    A  + +   R  DT + L 
Sbjct: 465 YVDVGVKVNAEPTIQLNNEVVIKLGLEVSSILGREKVGTDQATTVVTIGTRNLDTVLSLK 524

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G T ++ GL++      K+ + LL  IP+LG LF N+  + +++E+ +A TP +V+ V 
Sbjct: 525 DGETSIIGGLMQKSETDSKKKVFLLGDIPVLGNLFSNTGKSNDKSELLLAITPRIVRGVT 584

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           +            E+D  AF+  R ++
Sbjct: 585 V-----------PENDVAAFWSGREDE 600


>gi|83859862|ref|ZP_00953382.1| General (type II) secretion pathway (GSP) D protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852221|gb|EAP90075.1| General (type II) secretion pathway (GSP) D protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 622

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 140/362 (38%), Gaps = 28/362 (7%)

Query: 85  RTMYLFGKNVGQ-ANVILIGHD-------GKQMLNLDILI-ERDIAHLEMTLRRFIADSN 135
             + +F KN     ++I                 +    +   D   L   +R  + ++ 
Sbjct: 232 NQILVFAKNEDSLGHLIATARRLEEAAEHEDVTRSYVYQVRNTDAEELANIIRTVLGETG 291

Query: 136 IRVEMVSDTVVL-HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
                 ++T         +   S+ AV+     L  +G N+    +  +++  L+    +
Sbjct: 292 RSSSTGAETTAGETAGASSAVSSRLAVDTFGNRLIFTG-NRNEYDNLARLLGQLDTPVSE 350

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            V ++VTIAEV      ++G +  +       +       G           +  ++D  
Sbjct: 351 -VLVEVTIAEVIFSDTTRLGVEFFLN------TLGGDVQVGTSDGLGLSSGGLSAIVDAG 403

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGAT---- 305
             +    A    + I  L+ P + A SG+SA    G      T      +  +G+T    
Sbjct: 404 QLDIEAAARSTNSNINVLSTPRIVARSGESAEVQVGTDVPIITSQRAANTQDSGSTDILQ 463

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPS 364
           SV+    GV+L   P V S  RI L I  EVS      N A   P    R+  +++ L  
Sbjct: 464 SVSYRSTGVLLTVEPRVYSNNRIDLTIMQEVSSADDNPNQAIASPIISNRRMTSSITLQD 523

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T VL GL+ + + +   G+PL+  IP+LG +F+   F+ ++  + +  TP+++     
Sbjct: 524 GQTAVLGGLMSETVNRGSTGVPLVQDIPVLGNIFKTETFSNDQRVLLVLVTPYILNDRND 583

Query: 425 RD 426
           R 
Sbjct: 584 RQ 585


>gi|255349063|ref|ZP_05381070.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis 70]
 gi|255503601|ref|ZP_05381991.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis 70s]
 gi|255507281|ref|ZP_05382920.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis D(s)2923]
 gi|296439006|gb|ADH21159.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis E/11023]
          Length = 921

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225
            ++  KV++LLN       QV ++V I E   +     G Q +  G   G          
Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636

Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254
                      S   A + G   +   G  +              G++            
Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +  
Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L  T T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++          
Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +++     R +    P+ A E +
Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902


>gi|15605407|ref|NP_220193.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis D/UW-3/CX]
 gi|3329125|gb|AAC68269.1| probable Yop proteins translocation protein C/general secretion
           pathway protein [Chlamydia trachomatis D/UW-3/CX]
 gi|297748805|gb|ADI51351.1| General secretion pathway protein D [Chlamydia trachomatis D-EC]
 gi|297749685|gb|ADI52363.1| General secretion pathway protein D [Chlamydia trachomatis D-LC]
          Length = 921

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225
            ++  KV++LLN       QV ++V I E   +     G Q +  G   G          
Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636

Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254
                      S   A + G   +   G  +              G++            
Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +  
Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L  T T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++          
Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +++     R +    P+ A E +
Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902


>gi|166154891|ref|YP_001653146.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|165930879|emb|CAP06441.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 921

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225
            ++  KV++LLN       QV ++V I E   +     G Q +  G   G          
Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636

Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254
                      S   A + G   +   G  +              G++            
Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +  
Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L  T T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++          
Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +++     R +    P+ A E +
Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902


>gi|166154016|ref|YP_001654134.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis 434/Bu]
 gi|301335216|ref|ZP_07223460.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis L2tet1]
 gi|165930004|emb|CAP03487.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis 434/Bu]
          Length = 921

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225
            ++  KV++LLN       QV ++V I E   +     G Q +  G   G          
Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636

Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254
                      S   A + G   +   G  +              G++            
Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +  
Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L  T T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++          
Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +++     R +    P+ A E +
Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902


>gi|237805025|ref|YP_002889179.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273325|emb|CAX10240.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 921

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225
            ++  KV++LLN       QV ++V I E   +     G Q +  G   G          
Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636

Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254
                      S   A + G   +   G  +              G++            
Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +  
Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L  T T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++          
Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +++     R +    P+ A E +
Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902


>gi|330963696|gb|EGH63956.1| type III secretion component [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 174

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/162 (40%), Positives = 93/162 (57%), Gaps = 5/162 (3%)

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPV 340
           ASF +G +     V  +     +    YGV L F+PT+L  GRI L+++ EVS       
Sbjct: 1   ASFLAGSEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTST 59

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           + VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PILG LFR+
Sbjct: 60  LDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRS 119

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
            RF R ETE+ I  TP+LV+PV  R ++ P D       A A
Sbjct: 120 KRFQRNETELVILITPYLVEPVKARVVATPLDKQRAASTASA 161


>gi|255311500|ref|ZP_05354070.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis 6276]
 gi|255317802|ref|ZP_05359048.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis 6276s]
          Length = 921

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225
            ++  KV++LLN       QV ++V I E   +     G Q +  G   G          
Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636

Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254
                      S   A + G   +   G  +              G++            
Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +  
Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L  T T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++          
Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +++     R +    P+ A E +
Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902


>gi|323957549|gb|EGB53264.1| general secretion pathway protein D [Escherichia coli H263]
          Length = 615

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 108/301 (35%), Gaps = 44/301 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q              +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612

Query: 407 E 407
            
Sbjct: 613 N 613


>gi|206602610|gb|EDZ39091.1| Putative type II secretion system protein D [Leptospirillum sp.
           Group II '5-way CG']
          Length = 615

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/340 (20%), Positives = 122/340 (35%), Gaps = 49/340 (14%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             +E TLR+ I  + +  +  + TV + G V+ +  +QR +++    L +          
Sbjct: 276 DKMEGTLRKMIPKATVSADSKAQTVSVKGTVQDVFQAQRYLDIVRDQLRRE--------- 326

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGK 237
                          V  ++ IAE+        G   +        S    + A      
Sbjct: 327 ---------------VFFRIDIAEIDLTDKDAYGINWNALAHGVFNSTLALTGAGAGNAG 371

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             S GG  +  G    F    V+ ALE    +  + +P +  +SGQ  S  +     Y  
Sbjct: 372 LASTGGVTTPYGA--SFGSAAVIQALETIGRVHIINQPYVGTVSGQPVSLNATTDIPYLQ 429

Query: 298 V----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR-------IQTEVSEPV 340
                      S++     +     G+ L  TPT L   +I +        +Q  V+  +
Sbjct: 430 GEYPFFAGGLSSATETIPQIGYVPVGINLEVTPT-LEGDQIHMHGTVVVNSLQQFVTIDI 488

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            G+     P    R   T +    G T+V+ GL+ +   +    +P L +IP+L  LF  
Sbjct: 489 KGIGTFQNPEVNSRSQTTEITARDGQTVVIGGLMANTKNKTFWTVPFLGQIPVLKWLFSG 548

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
             + ++ TE+ +  TP + +    R  S   D +   D  
Sbjct: 549 YSYKKQVTELVVIITPEIRR--TPRLSSPRTDDFLNPDSP 586


>gi|171462916|ref|YP_001797029.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192454|gb|ACB43415.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 209

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 8/192 (4%)

Query: 233 DFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           D GG  +S     +V   L   +     +  L ALE     + L+ P +       A+  
Sbjct: 20  DLGGPGLSSFNPATVAATLVSRNASRILQAELSALESEGQGKILSNPRIMTGDQVKATIE 79

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
            G +  Y+T  S+   + +      + L   P +   G+I + +   +++  +G+     
Sbjct: 80  LGTELPYQT--SNQNGSKLQFRKANLRLEALPKIHPDGKISMLV--GINKDTVGMKTEQG 135

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            +   +   + V + +GGT ++ G+L+   ++ +  IPLL  IP++G  FR+    +++T
Sbjct: 136 YAIDTKSLSSEVTVENGGTAIIGGILQTTEREDEVKIPLLGDIPLIGHFFRHKSKLQDKT 195

Query: 409 EIFIAATPFLVK 420
           E+ +  TP ++ 
Sbjct: 196 ELLVFLTPTVLD 207


>gi|289525718|emb|CBJ15199.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis Sweden2]
 gi|296435288|gb|ADH17466.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis E/150]
          Length = 921

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225
            ++  KV++LLN       QV ++V I E   +     G Q +  G   G          
Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636

Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254
                      S   A + G   +   G  +              G++            
Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +  
Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L  T T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++          
Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +++     R +    P+ A E +
Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902


>gi|76789414|ref|YP_328500.1| general secretion pathway protein D [Chlamydia trachomatis
           A/HAR-13]
 gi|237803104|ref|YP_002888298.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis B/Jali20/OT]
 gi|76167944|gb|AAX50952.1| general secretion pathway protein D [Chlamydia trachomatis
           A/HAR-13]
 gi|231274338|emb|CAX11133.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 921

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225
            ++  KV++LLN       QV ++V I E   +     G Q +  G   G          
Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636

Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254
                      S   A + G   +   G  +              G++            
Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +  
Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L  T T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++          
Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +++     R +    P+ A E +
Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902


>gi|238763779|ref|ZP_04624738.1| Protein transporter HofQ [Yersinia kristensenii ATCC 33638]
 gi|238698081|gb|EEP90839.1| Protein transporter HofQ [Yersinia kristensenii ATCC 33638]
          Length = 425

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 6/207 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L+++G +  +     +S+     F  +      +    F+V  +
Sbjct: 217 QQVQLAAHIVTISRENLQELGVRWGMGEPQPTSALRMSDFNVNLPLPTSAVSAGFNVARI 276

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +    E+   +  +A P L     Q+AS   G    Y       G T++   
Sbjct: 277 GGRLLELELSAL-EQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGTTTIEFK 335

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +  GD  +     ++  T + +  G TI
Sbjct: 336 EAVLGMEVTPKILRNGKITLNLKISHNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETI 395

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILG 395
           VL G+ +    Q    +P+L+ IP LG
Sbjct: 396 VLGGIFQQKNSQGVNKVPMLADIPWLG 422


>gi|296437143|gb|ADH19313.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis G/11222]
          Length = 921

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225
            ++  KV++LLN       QV ++V I E   +     G Q +  G   G          
Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636

Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254
                      S   A + G   +   G  +              G++            
Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +  
Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L  T T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++          
Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +++     R +    P+ A E +
Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902


>gi|330863522|emb|CBX73638.1| general secretion pathway protein D [Yersinia enterocolitica
           W22703]
          Length = 577

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 12/237 (5%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----SKSFAADFGGK 237
            +V+  L+I    QV ++  I E +      +G Q +            + S   +    
Sbjct: 340 DQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKTNSIQTNNNSG 398

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                    +     + +++ +  AL   +    LA P++  +    A F  G +    T
Sbjct: 399 NPIPMMMAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 458

Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PS 350
            + +T       S++    GV+L   P +     + L I+ EVS      +         
Sbjct: 459 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSV 518

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +  R  +  V + SG T+V+ GLL   I ++   +PLL  IP +G LFR S+   ++
Sbjct: 519 FNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQSKERLKK 575


>gi|226327391|ref|ZP_03802909.1| hypothetical protein PROPEN_01261 [Proteus penneri ATCC 35198]
 gi|225203917|gb|EEG86271.1| hypothetical protein PROPEN_01261 [Proteus penneri ATCC 35198]
          Length = 367

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 100/258 (38%), Gaps = 28/258 (10%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFAADFGGKFVS 240
           L    + QV +   I    +D L ++G Q  +         +S+  S + +A        
Sbjct: 112 LRDTPQQQVHITAHIVSSSQDALNELGTQWGLQALKTQTEATSTTVSNTISATSSLNSAL 171

Query: 241 EGGDFSVKGV-----------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                S   +                 ++    E  L ALE+   +  +A P LT    +
Sbjct: 172 STPSLSALSLHQNTKNPLHYIAFNIARINGRLLELELSALEQEKQLSIIASPRLTTAHEK 231

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342
           +AS   G +  Y  VS     T V   +  + +  TP +    +I L ++   + P I  
Sbjct: 232 TASIKQGTEIPY--VSRDNEITQVQFKEAVLGMEVTPIIQRNKKIRLILKISQNTPGIAL 289

Query: 343 -VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             +  +  S   ++  T V +  G TI+L G+ +   Q+    IP LS IP+LG LF + 
Sbjct: 290 VQSGSEHLSIDKQEISTEVAIRDGETIMLGGIFQQKQQEHTAKIPFLSSIPLLGVLFSHK 349

Query: 402 RFNREETEIFIAATPFLV 419
           R      E+ I  TP L+
Sbjct: 350 RDQHSRHELVIFITPKLI 367


>gi|303251572|ref|ZP_07337746.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252115|ref|ZP_07534014.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302649570|gb|EFL79752.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860415|gb|EFM92429.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 221

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 5/198 (2%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
            +++  +   ++ AL+     + LAEP ++ +SG++A    GG+  +       G  SV 
Sbjct: 2   ALVNSNNLNVLISALDNQNNGKILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVL 60

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGG 366
             ++G+ L     V    RI L +   VS         +  +P +  R++ +T E+ +G 
Sbjct: 61  YKEFGIKLAVGAKVQKSDRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGE 120

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + +++GLL     +  + +P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV    
Sbjct: 121 SFIISGLLNKQDIEGIKKVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQ 180

Query: 427 LSRPDDHYSVEDDAKAFF 444
           +  P   +      + FF
Sbjct: 181 VLYPT--FENTGTMERFF 196


>gi|17548695|ref|NP_522035.1| putative general secretion pathway GSPD-related protein [Ralstonia
           solanacearum GMI1000]
 gi|17430943|emb|CAD17625.1| putative general secretion pathway gspd-related protein [Ralstonia
           solanacearum GMI1000]
          Length = 698

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 83/409 (20%), Positives = 147/409 (35%), Gaps = 49/409 (11%)

Query: 51  SIGLNKVIILQVPVDVQD-VLVSDPTKADVV--VHSPRTMYLFGKNV--GQANVILIGHD 105
           S G+N ++   V  D++  V +      D +  + S   +    K +  G   +I     
Sbjct: 143 STGINFILDKDVRPDLKTTVFIRQAKLEDALDLILSTTQL---NKKMMNGSTILIYPNTP 199

Query: 106 GKQMLNLDILI------ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            KQ    D+++        D       L+  +   +  ++  ++ VV+        +S  
Sbjct: 200 EKQRDYQDLVVRAFYLTNADAKQTGAMLKAMLKIRDPYIDERTNMVVIR-------ESPD 252

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            V L+E  +    RN        +V+ +                      L Q+G Q+  
Sbjct: 253 VVRLAERLVELQDRNDSEVVLEVEVLEV------------------SSTKLTQLGVQY-- 292

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
              +S      +A                  +   +   VL+          LA P + A
Sbjct: 293 --PNSFTLTPLSATGASSLTLSDFKGLNSDRIGVSTPNVVLNLRRELGDTDLLANPKIRA 350

Query: 280 ISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            + + A    G +    T +S++    + SV   D G+ L   P++     + ++I  EV
Sbjct: 351 KNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEVSMKINLEV 410

Query: 337 SEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           S     +             R A+T ++L  G T +LAGL+K         IP L  IP+
Sbjct: 411 SSLTNQITTRSGTVAYQIGTRTANTVLKLHDGETQLLAGLIKTQQTSSAARIPGLGDIPL 470

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           LG LF +   N    EI ++ TP +VKP    D +  +     E +A+A
Sbjct: 471 LGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPDTNFMEFWSGTETNARA 519


>gi|261854769|ref|YP_003262052.1| general secretion pathway protein D [Halothiobacillus neapolitanus
           c2]
 gi|261835238|gb|ACX95005.1| general secretion pathway protein D [Halothiobacillus neapolitanus
           c2]
          Length = 725

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/274 (24%), Positives = 106/274 (38%), Gaps = 38/274 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V++ L+I    QV ++  IAEV   + K++G Q  + G  SG      + F G   S 
Sbjct: 374 ESVIDQLDIR-RKQVLVEAIIAEVSNGVTKKLGTQF-LVGGGSGTVPIGISTFNGLLSSV 431

Query: 242 GGDFSVKGVL---------------------------DRFSFETVLHALERATAIRTLAE 274
               +  G                                 F  ++ AL   +    L+ 
Sbjct: 432 ASSAAQAGTGSVGSAIGLGLAGALGDGGNIGVGRYGQGGADFALLVSALAGNSGNNILST 491

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSP 325
           P+L  +  Q AS   G      T S +   +         ++T  D GV L  TPT+   
Sbjct: 492 PSLLTLDNQEASIVVGQNIPIVTGSYAQTGSATSPTNPFQTITREDIGVKLKVTPTISPD 551

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G + L+I+ EVS       +        R   TTV++  G  +VL GL+ D     ++ +
Sbjct: 552 GTVRLKIEQEVSSLDSAAQSSAGLITNKRNVTTTVQVDDGDVVVLGGLIDDSTNSNQQSV 611

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P L  IPILG LFR    +  +  + I   P +V
Sbjct: 612 PGLGDIPILGNLFRYRSASTNKRNLMIFIRPLIV 645


>gi|171911307|ref|ZP_02926777.1| putative general secretion pathway protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 821

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 115/338 (34%), Gaps = 97/338 (28%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------------------------ 217
           +  +  L  A   Q+ +     EV +    ++GF                          
Sbjct: 448 EAFVEGLTKAVPQQIYITTKFVEVSQKNTDELGFDWLLGQFDIGGRTFASGGTAATSSNY 507

Query: 218 ------------SITGSSSGPSKSFAADFGGKFVS--------EGGDFSVKGVLDRFSFE 257
                       S+T  +   S + AAD     +S          G F++ GV     F+
Sbjct: 508 SFTQDGTAIGGYSVTSGNRSGSSAIAADSIDGLISGQSQASSVAPGVFTLAGVFTDPQFQ 567

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------------------- 297
             + AL +   +  ++ P++T  SGQ A+     + +Y T                    
Sbjct: 568 VTIRALSQKKGVDLMSAPSVTTRSGQRATVEVIREFIYPTEFDPPQIPQNFGATSSTSTT 627

Query: 298 --------VSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSE---------- 338
                     + T  T+      GV L   P +   G  I L +  EV+E          
Sbjct: 628 GTSSTSSFPVTPTTPTAFEMRPVGVRLEVDPVIGPDGYTIDLNLAPEVTEFEGFINYGSP 687

Query: 339 --------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
                           +  N  + P +  RK  T V +  G T+ + GL+++D+Q +++ 
Sbjct: 688 INTASTDALGNPTTVTLTENKIEQPVFSTRKVTTAVTVWDGQTVAMGGLIREDVQDVEDK 747

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           +P+L  +P LG LF++   +  +  + I  T  L+ P 
Sbjct: 748 VPILGDLPFLGRLFQSKAEDHFKRNLMIFVTAKLIDPS 785


>gi|187251612|ref|YP_001876094.1| rcpA subunit [Elusimicrobium minutum Pei191]
 gi|186971772|gb|ACC98757.1| RcpA subunit [Elusimicrobium minutum Pei191]
          Length = 248

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 21/231 (9%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V++   I E+   I   IGF                 DF  K +   G   +     + +
Sbjct: 33  VSVSADIVEISGSINSNIGFSWYNIF-----------DFAEKEIP--GVLEIGSFERKTA 79

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
             T L  +E     + L+ P +   +G +A+ + GGQ  +  V++    TS+   DYGV+
Sbjct: 80  LTTRLRLMENEGKAQILSNPKIVTRTGTNANISVGGQIPFPEVNNQGVGTSM--LDYGVI 137

Query: 316 LHFTPTVLSP--GRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           L+  PT++      I L++  EVS P     + V +  +PS   R+ +T VEL SG T+V
Sbjct: 138 LNVMPTIIPEQSNLINLQVNLEVSAPDYSRTVSVGSTTVPSINKRRVETQVELHSGETLV 197

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + GL         + IPLL ++P++G LFRN     E+  +F+  T  +V+
Sbjct: 198 IGGLKSSSRNVSVDRIPLLGRLPLIGLLFRNKDTLDEQRSLFLFVTVEIVE 248


>gi|213024121|ref|ZP_03338568.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 148

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 2/145 (1%)

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           + A   Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++    
Sbjct: 1   MLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQ 60

Query: 337 SEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           + P  V+    G++ +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP L
Sbjct: 61  NVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWL 120

Query: 395 GALFRNSRFNREETEIFIAATPFLV 419
           G LFR+     E  E+ +  TP LV
Sbjct: 121 GQLFRHDGKEDERRELVVFITPRLV 145


>gi|119476023|ref|ZP_01616375.1| type II and III secretion system protein [marine gamma
           proteobacterium HTCC2143]
 gi|119450650|gb|EAW31884.1| type II and III secretion system protein [marine gamma
           proteobacterium HTCC2143]
          Length = 617

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 145/380 (38%), Gaps = 32/380 (8%)

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIG-HDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
           AD    S   + L     G+   I         +++ D    R +  L   L + I+D+ 
Sbjct: 199 ADAENVSGLVLSLLSDTTGETFSIAPDIRSNSLLMSGDAATTRRVRQLVKQLDQPISDNG 258

Query: 136 IR-------VEMVSDTVVLHGMVRTIQDSQR-AVELSETFLSQSGRNQYANSSSK----- 182
                    +E      +L GM   +Q++ R A + S+  +  S  +     ++      
Sbjct: 259 NTRVVYLHYLEAKEVLPILKGMGAAMQENNRNAGDSSDISIEASESSNALVMTAPPSMLD 318

Query: 183 ---KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
              +V+  ++I     + ++  I EV +D  + IG + + + S++  +++   +FG + +
Sbjct: 319 VMSRVIEQIDIRRAS-ILVEAIIVEVSKDFSQTIGVEWNTSLSANDGAEALT-NFGLRNI 376

Query: 240 SEGGDFSVKGVL------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            E G  S+ G           S   +  A+        L+ P +  +  + A    G   
Sbjct: 377 DESGAVSLLGAGLNLGFYRNGSLRVLAQAIANENDANILSSPRIMTMDNEEAEILVGSNV 436

Query: 294 LYK-------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
            +        + S+    T++  HD G+ L  TP +     I L I  EV          
Sbjct: 437 PFITGQSTGSSSSTGDPFTTIERHDIGLTLKITPQINEGDSITLDILQEVETISEATTVA 496

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           +      R   T V +     +VL GL+ DD Q+L   +P L  +P+LG LFR +     
Sbjct: 497 NDIVTNKRSIKTKVIVEDDAILVLGGLVSDDTQELVSKVPFLGDLPLLGGLFRTTTDTVV 556

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +V    + D
Sbjct: 557 KKNLMVFIHPVIVDSDQISD 576


>gi|296436215|gb|ADH18389.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis G/9768]
 gi|296438075|gb|ADH20236.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis G/11074]
 gi|297140576|gb|ADH97334.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis G/9301]
          Length = 921

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225
            ++  KV++LLN       QV ++V I E   +     G Q +  G   G          
Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636

Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254
                      S   A + G   +   G  +              G++            
Sbjct: 637 STGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+    TG+ +  +  
Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L  T T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++          
Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +++     R +    P+ A E +
Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902


>gi|115524675|ref|YP_781586.1| general secretion pathway protein D [Rhodopseudomonas palustris
           BisA53]
 gi|115518622|gb|ABJ06606.1| general secretion pathway protein D [Rhodopseudomonas palustris
           BisA53]
          Length = 789

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 8/232 (3%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++VTIAE+      Q G Q  +   +       A+    +    G +     +LD
Sbjct: 529 PTQVNIEVTIAEITLTSELQYGVQFFLKSGNFSAGLGGASGIPLRTSYPGLNLVSGALLD 588

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSV 307
               + VL AL + T+++ L+ P+L  +  Q A    G Q    T       S+   ++V
Sbjct: 589 P---QVVLDALAQFTSVKVLSSPSLVVLDRQPAVLQVGDQIPILTRQLTSAESTATVSNV 645

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              D G++L+  P V + G + L ++ ++S  V        P+   R+  + + + SG T
Sbjct: 646 DLKDTGIILNVLPRVNANGLVTLNVEQQISNVVSTQPDTLTPTISQRRVKSVISVSSGQT 705

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++LAGL+ D     + G+P++S+I +L  L  +       TE+ I   P ++
Sbjct: 706 VLLAGLITDGQNINRNGLPVVSQIKVLSDLLSSHDRTASRTELIIFIRPKII 757


>gi|307720370|ref|YP_003891510.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978463|gb|ADN08498.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 504

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 103/261 (39%), Gaps = 23/261 (8%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +K+ N L++  +    QV ++V + E+  D     G   S    S   +       GG  
Sbjct: 222 QKIQNFLDLLMKRMHKQVLIEVKLIELVYDDSHSSGIDWSQLNVSLNGTLGGTQGTGGNT 281

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +         +   FS       L     ++ ++ P +  ++ Q A    G Q  YK  
Sbjct: 282 FNNSYS-----IAYNFSTSNFFKYLNTFGDVKVMSNPKILTMNNQPAVVNVGQQLSYKYQ 336

Query: 299 SSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           + S   T          S+ +   G+ L+  P +     I + I   VS           
Sbjct: 337 TGSVTTTGGTAAGTNTFSLGSTFIGITLYVIPEITDSNEILMSINPVVSSLSADNTPTTS 396

Query: 349 -----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P  ++++  + V++ +G  +++ GL+     +  + IP+L  IPIL  +FR +  
Sbjct: 397 IREIPPDTKIKQMTSVVKVKNGQKVLIGGLISATKGKDSKKIPILGDIPILSTIFRYTNN 456

Query: 404 NREETEIFIAATPFLVKPVAM 424
            +  TE+FI  TP +VK  +M
Sbjct: 457 KKSRTEMFILITPKIVKNSSM 477


>gi|283852780|ref|ZP_06370044.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
 gi|283571861|gb|EFC19857.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
          Length = 634

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 6/211 (2%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           S  G +     +  +   G   +  G   + G +     E  L AL     I+ L+ PT+
Sbjct: 406 SGQGFAINNPANLTSAATGLGAAGTGLNFLFGKIGENVLEAQLTALAEENKIKILSSPTI 465

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           T +   SA   +G    Y  VS+S   T+V      + L   P V+    + ++I  +  
Sbjct: 466 TTMENLSAFVENGKDIPY--VSTSQNGTNVQFAHATLKLEMLPHVVDGSNLRMKIVVKDD 523

Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           +  P  G      P    R+  + + +  G TIV++GL +D +     G+P L  IP LG
Sbjct: 524 QVDPNQGNWVQGNPPIYKRETQSNLVVEDGDTIVISGLTRDTVTDANSGVPFLRDIPGLG 583

Query: 396 ALFRNSRFNREETEIFIAATPFLV--KPVAM 424
             F+    +    E+ I  TP ++  KPVA 
Sbjct: 584 WAFKAKSSDIHREEMLIFITPVILQEKPVAP 614


>gi|313891897|ref|ZP_07825499.1| bacterial type II/III secretion system short domain protein
           [Dialister microaerophilus UPII 345-E]
 gi|313119672|gb|EFR42862.1| bacterial type II/III secretion system short domain protein
           [Dialister microaerophilus UPII 345-E]
          Length = 405

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 15/273 (5%)

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
               +  +   ++ + D+ +      T          A S  + ++  L+I  E QV ++
Sbjct: 114 SYGKSNEIANELKNLTDNVQVASDVGTNSVIVNATPRAMSELEHIIKALDIP-EKQVKVE 172

Query: 200 VTIAEVRRDILKQIGFQH---SITGSS--------SGPSKSFAADFGGKFVSEGGDFSVK 248
             +  V R   K +G      S+TG +        S  +K+        +       S+ 
Sbjct: 173 AEVLAVNRSYAKDLGIDWQFKSLTGQAEQRNVYDKSSKTKTSYLKIPEDYAGISYGKSIT 232

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATS 306
           G    F F+  L+AL      + LA+P +  ++G++A    G +       + + T  TS
Sbjct: 233 GNPYTFFFQAKLNALLSDGKAKILAKPNVVTLNGRTAEILIGSKIPVLVEHMENGTKTTS 292

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +   D G+ L +TP V     I   I  EVS P + V          R+A TTV L SG 
Sbjct: 293 IEYKDAGIKLTYTPNVSKNSEITADIIAEVSTPYL-VPEMKAYRIVTRQAHTTVRLKSGD 351

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            + + GL+  +       +P+L  IPILG LF+
Sbjct: 352 MLTIGGLIDKEEANNIRKVPVLGDIPILGKLFQ 384


>gi|307546346|ref|YP_003898825.1| type IV pilus assembly protein PilQ [Halomonas elongata DSM 2581]
 gi|307218370|emb|CBV43640.1| K02666 type IV pilus assembly protein PilQ [Halomonas elongata DSM
           2581]
          Length = 445

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 110/257 (42%), Gaps = 17/257 (6%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ ++++  L++A   QV ++  I   R  + +++G    ++ +         A      
Sbjct: 187 AAIRRMLERLDVA-VRQVRIEARIVIARDSVARELGVSWGLSANEGSTPSGLNAAGASSG 245

Query: 239 VSEGGD--------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           V+E G               F    +      +  L ALE     R +++P +   + ++
Sbjct: 246 VAETGGLAVDLGSARSPATTFGFGYLSGDVLLDLELRALESEGKSRIISQPRVITANQRT 305

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A    G +  Y+  +SS GAT+V   +  + L  TP +    RI + +    ++ V    
Sbjct: 306 ALIKQGTEIPYQEATSS-GATNVEFKEAVLSLEVTPQITPDDRIIMELVIN-NDTVAQET 363

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            G  P+    +  T V +  G T+VL G+L  +  +     PLL  +P+LG LFR +  +
Sbjct: 364 FGGAPAIDTNQIATQVLVDDGDTVVLGGILTTEQVRQLFKTPLLGDLPLLGHLFRYTENS 423

Query: 405 REETEIFIAATPFLVKP 421
            ++ E+ +  TP ++  
Sbjct: 424 SDQVELLVFITPRILDD 440


>gi|300697020|ref|YP_003747681.1| type II secretory pathway, gspD-related protein [Ralstonia
           solanacearum CFBP2957]
 gi|299073744|emb|CBJ53265.1| putative type II secretory pathway, gspD-related protein [Ralstonia
           solanacearum CFBP2957]
          Length = 761

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 139/374 (37%), Gaps = 33/374 (8%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--HGMVRTIQDS 157
            ++  D +  L   + I +  A LE  L   ++ + +  +M++ + +L         +D 
Sbjct: 209 FILDKDVRPDLKTTVFIRQ--AKLEDALDLILSTTQLNKKMMNGSTILIYPNTPEKQRDY 266

Query: 158 Q----RAVELSETFLSQSGRN-----QYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVRR 207
           Q    RA  L+     Q+G       +       +  N++ I    D V L   + E++ 
Sbjct: 267 QDLVVRAFYLTNAEAKQTGAMLKTMLKIREPYIDERANMVVIRESPDVVRLAERLVELQD 326

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----------- 256
               ++  +  +   SS         +   F       +    L    F           
Sbjct: 327 RNDSEVVLEVEVLEVSSNKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNSDRIGVS 386

Query: 257 --ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311
               VL+          LA P + A + + A    G +    T +S++    + SV   D
Sbjct: 387 TPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYID 446

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTI 368
            G+ L   P++     + ++I  EVS     +             R A+T ++L  G T 
Sbjct: 447 VGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHDGETQ 506

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +LAGL+K         IP L  IP+LG LF +   N    EI ++ TP +VKP    + +
Sbjct: 507 LLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPETN 566

Query: 429 RPDDHYSVEDDAKA 442
             +     E +A+A
Sbjct: 567 FMEFWSGTETNARA 580


>gi|239905312|ref|YP_002952051.1| hypothetical protein DMR_06740 [Desulfovibrio magneticus RS-1]
 gi|239795176|dbj|BAH74165.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 707

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 21/234 (8%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFS--------------VKGVLDRFSFETVLHAL 263
           + T S +    +    FG  F +     +              + G +     E  L AL
Sbjct: 464 ASTASPAFAGGTSGQGFGLNFPALSSALTSASGLGAAGAGVNFLFGNIAGNVLEAQLTAL 523

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
             +  ++ L+ PT+T +   SA   +G    Y  VS+S   T+V      + L   P V+
Sbjct: 524 AESNKVKILSSPTITTMENHSAFVENGMDVPY--VSTSQNGTNVQFAHATLKLEMLPHVV 581

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
               + ++I  +  +          P    R+  + + +  G TIV++GL +D +   + 
Sbjct: 582 DNSNLRMKIVVKDDQVDTTNTVQGNPFIYKRETQSNLVVEDGDTIVISGLTRDTVGDNEA 641

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-----PVAMRDLSRPDD 432
           G+P LS IP LG  F+    + +  EI+I  TP ++K     P     + RP D
Sbjct: 642 GVPYLSDIPGLGWAFKTKASSIKREEIYIFVTPTILKEKPISPPPAVAMIRPSD 695


>gi|239618224|ref|YP_002941546.1| type II and III secretion system protein [Kosmotoga olearia TBF
            19.5.1]
 gi|239507055|gb|ACR80542.1| type II and III secretion system protein [Kosmotoga olearia TBF
            19.5.1]
          Length = 2628

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 149/397 (37%), Gaps = 45/397 (11%)

Query: 35   AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD---VVVHSPRTMYLFG 91
            AV+      +G    +   L++   L +     D  V+     +   V V     +Y+  
Sbjct: 2267 AVMKRIAKSLGISLMVPEELDETFTLTLEGVTWDTFVA--AIQECEPVKVEKVNDIYIVR 2324

Query: 92   KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            K    +        G+Q+      +  +I  L+  +  +     +  + V+  +V+ G+ 
Sbjct: 2325 KKEIVSEAPTDDATGEQIY----RVYHNIEELKTLIEFY--GGTVYADSVNGILVVKGLP 2378

Query: 152  RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            ++     R +EL E         +                   QV ++  I  V + +L 
Sbjct: 2379 KS-----RVLELMEQVSGTFTSPK------------------KQVKIETRI--VDKSLLD 2413

Query: 212  QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-DRFSFETVLHA-LERAT-A 268
             I  Q S +     P+  F++       S         +L +  +    + A LE++   
Sbjct: 2414 DITKQFSTSLGFEQPNILFSSGSLNLSFSILDSVDFAKLLKNLITGSATITAQLEKSNVD 2473

Query: 269  IRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
               ++ P++ A+SG+ A    G            ++      +   + GV +  TPTV  
Sbjct: 2474 GSIISNPSIVALSGEEARIHIGDTIPILLKKIDPATGNIVEELQYLETGVEMTITPTVKD 2533

Query: 325  PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             G I L +  +VSEP    N  D+   + R+A T + +  G T+ + GL+ +        
Sbjct: 2534 DGTILLDLYIKVSEPQPYAN--DLYGEKTREAKTKLVISDGNTLTIGGLVSERENVSVTK 2591

Query: 385  IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            +P    +P +G LFR  +  +E+ E+ I  T  +V P
Sbjct: 2592 LPFFGDLPFIGKLFRAEKTTKEQREMVIFITAKVVAP 2628


>gi|269792653|ref|YP_003317557.1| type II and III secretion system protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100288|gb|ACZ19275.1| type II and III secretion system protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 589

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 59/302 (19%), Positives = 124/302 (41%), Gaps = 22/302 (7%)

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETF-LSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
              D   +   V+T+ +  R + + E   +          ++ ++ +N  +  G+ QV L
Sbjct: 274 SYGDVKQISAQVQTLFEITRPIAVDERLRVMYVTGRPEQLAAVERFLNAADHPGK-QVML 332

Query: 199 KVTIAEVRRDILKQI--GFQ-----HSITGSSSGPSKSFAADFGGKF-------VSEGGD 244
           +  I EV+ D ++++            ++ SS G    ++              V++ G 
Sbjct: 333 QARIVEVKDDGVRELESVVNTVYRYWWLSFSSKGGVLGYSRINQESVYKNDTNRVTKPGA 392

Query: 245 FSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             +  + +       +  + ALE A   +TLA P++  + G+ A  +      Y +    
Sbjct: 393 TDISAIAESGGLSLLDAGIKALENADKGKTLASPSVVVVDGKEAKISLTENIKYISARDQ 452

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADT 358
            G  + +    G  + F PTV   G + +++  +  E    +  G   ++P    R+  +
Sbjct: 453 AGNPTYSEEKVGPTMEFLPTVGRDGFVTIKMTLKTGEVTKYIKGGLGEEVPQTSTREVTS 512

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V +  G   V+ GL +D     +  IP+LS IP++G LF++    +E  E+ +   P +
Sbjct: 513 YVRVRDGEPFVVGGLFRDSNTFSEYRIPVLSDIPLIGELFKSRTKKKERGEVAMIVIPHI 572

Query: 419 VK 420
           + 
Sbjct: 573 LD 574


>gi|331654572|ref|ZP_08355572.1| general secretion pathway protein D [Escherichia coli M718]
 gi|331047954|gb|EGI20031.1| general secretion pathway protein D [Escherichia coli M718]
          Length = 615

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 109/301 (36%), Gaps = 44/301 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 E 407
            
Sbjct: 613 N 613


>gi|187250988|ref|YP_001875470.1| type II secretion system [rpteom [Elusimicrobium minutum Pei191]
 gi|186971148|gb|ACC98133.1| Putatively involved in type II secretion system [Elusimicrobium
           minutum Pei191]
          Length = 527

 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 96/270 (35%), Gaps = 43/270 (15%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADF--GGKFVSEGGDFS 246
             QV ++  I EV +    +IG  +  T  +    +GP++    D+  G      G  F 
Sbjct: 256 PPQVLIEAQIIEVNKSSGLEIGLSYGGTDGTIFKFTGPARGVDIDYVKGNGVSGWGYIFP 315

Query: 247 VK-----------------------------GVLDRFSFETVLHALERATAIRTLAEPTL 277
                                            LD  SF  VL +L      + L +P +
Sbjct: 316 PAGTGTGGSSGGDSGGGSTDGSGGNSNSPKDAFLDFSSFSIVLKSLLTRGEAKYLGKPKV 375

Query: 278 TAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             I+ Q A   S               T S++  + +      G+ L  TP V   G I 
Sbjct: 376 VTINNQPAVIESTRDAAVGFASNLSGNTGSTNVVSQTAERKTVGLTLKVTPQVNKEGYIT 435

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           L I+   S       +        R A T V + +G T+VL GLL          +PLL 
Sbjct: 436 LLIEPSYSSVANSAVSDGTKDTLNRSASTLVRVKNGQTVVLGGLLSSREILEDRKVPLLG 495

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP++G LF      +E T++ I  TP ++
Sbjct: 496 DIPLIGWLFTQRSTTKETTDMVIFVTPTIL 525


>gi|71905856|ref|YP_283443.1| type II and III secretion system secretin [Dechloromonas aromatica
           RCB]
 gi|71845477|gb|AAZ44973.1| type II and III secretion system protein:NolW-like:Secretin/TonB,
           short N-terminal [Dechloromonas aromatica RCB]
          Length = 715

 Score =  156 bits (394), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 92/256 (35%), Gaps = 27/256 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------ 238
            G  QV ++  + E +    + +G +       +        +  G              
Sbjct: 453 TGARQVLIEARVVEAQDSFNRALGGKFGFLNKQAVQPAGSGINVAGGSSTTAGQSTSTPM 512

Query: 239 -------VSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                   S GG  ++      FS      L ALE     + ++ P +   +   A    
Sbjct: 513 VGVNLPSPSTGGSLALSLFTASFSRILNLELAALESDGLGKIVSSPRVITANNVKAKIED 572

Query: 290 GGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----V 343
           G +  Y T  SS G    +V+     + L  TP +   G + + +  +  E        +
Sbjct: 573 GTEIPYVTTQSSGGTTTATVSFKPAKLSLEVTPQITPEGTVRMNLVVKKEEADWTKAVVL 632

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           N    P  +    +T V + +GGT+V+ G+   D Q   E +PLL  IP  G LF+    
Sbjct: 633 NGYANPPIKSSVVETNVVVENGGTVVIGGVFITDTQNSVEKVPLLGDIPFFGWLFKYKND 692

Query: 404 NREETEIFIAATPFLV 419
             +  E+ +  TP ++
Sbjct: 693 IGKRRELLVFITPRVI 708


>gi|323941937|gb|EGB38116.1| general secretion pathway protein D [Escherichia coli E482]
          Length = 615

 Score =  155 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 109/301 (36%), Gaps = 44/301 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 E 407
            
Sbjct: 613 N 613


>gi|307720788|ref|YP_003891928.1| pilus (MSHA type) biogenesis protein MshL [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978881|gb|ADN08916.1| pilus (MSHA type) biogenesis protein MshL [Sulfurimonas
           autotrophica DSM 16294]
          Length = 542

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 103/277 (37%), Gaps = 33/277 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKFVSEG-------- 242
           QV + V +  V     K  G       ++       S +   + G    ++G        
Sbjct: 239 QVLIDVQLLSVTMSKGKSTGIDWKQLYALQNIKLSASTANYNNIGTTIPADGIITDTAAV 298

Query: 243 --GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             G   +  +        V+  L+    + +++ P +  ++ Q A  T+G ++ YK +SS
Sbjct: 299 GAGASQLLSMSASGQLTEVIKFLKTQGDVNSISNPKVLTLNNQPALITAGTEYFYKIISS 358

Query: 301 S------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           +            T   +V +   GV+L  TP +     I L+I   +SE    ++    
Sbjct: 359 TNQQGTGGGVAATTQNDTVNSVFAGVLLTITPEISDDKTITLKINPSLSETTTDISQTSN 418

Query: 349 ------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                 P    R+  + V +  G  I+L GL+          +P+L  IP+LG LF++  
Sbjct: 419 SGRDMPPDLNRRQLSSVVTVKDGNRIILGGLINSKNTSDTNQVPILGSIPVLGYLFKHEE 478

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
             +   E+ I   P ++       +S  D  Y    D
Sbjct: 479 IVKTVEELVIIIEPHIIH-KEKDSISLSDLGYEGLSD 514


>gi|207739033|ref|YP_002257426.1| general secretion pathway gspd-related protein [Ralstonia
           solanacearum IPO1609]
 gi|206592404|emb|CAQ59310.1| general secretion pathway gspd-related protein [Ralstonia
           solanacearum IPO1609]
          Length = 761

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 140/374 (37%), Gaps = 33/374 (8%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--HGMVRTIQDS 157
            ++  D +  L   + I +  A LE  L   ++ + +  +M++ + +L         +D 
Sbjct: 209 FILDKDVRPDLKTTVFIRQ--AKLEDALDLILSTTQLNKKMMNGSTILIYPNTPEKQRDY 266

Query: 158 Q----RAVELSETFLSQSGRN-----QYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVR- 206
           Q    RA  L+     Q+G       +       +  N++ I    D V L   + E++ 
Sbjct: 267 QDLVVRAFYLTNAEAKQTGAMLKTMLKIREPYIDERANMVVIRESPDVVRLAERLVELQD 326

Query: 207 RDILKQIGF------------QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           R+  + +              Q  I   +S      +A                  +   
Sbjct: 327 RNDSEVVLEVEVLEVSSTKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNSDRIGVS 386

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311
           +   VL+          LA P + A + + A    G +    T +S++    + SV   D
Sbjct: 387 TPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYID 446

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTI 368
            G+ L   P++     + ++I  EVS     +             R A+T ++L  G T 
Sbjct: 447 VGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHDGETQ 506

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +LAGL+K         IP L  IP+LG LF +   N    EI ++ TP +VKP    + +
Sbjct: 507 LLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPETN 566

Query: 429 RPDDHYSVEDDAKA 442
             +     E +A+A
Sbjct: 567 FMEFWSGTETNARA 580


>gi|207724227|ref|YP_002254624.1| general secretion pathway gspd-related protein [Ralstonia
           solanacearum MolK2]
 gi|206589440|emb|CAQ36401.1| general secretion pathway gspd-related protein [Ralstonia
           solanacearum MolK2]
          Length = 761

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 140/374 (37%), Gaps = 33/374 (8%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--HGMVRTIQDS 157
            ++  D +  L   + I +  A LE  L   ++ + +  +M++ + +L         +D 
Sbjct: 209 FILDKDVRPDLKTTVFIRQ--AKLEDALDLILSTTQLNKKMMNGSTILIYPNTPEKQRDY 266

Query: 158 Q----RAVELSETFLSQSGRN-----QYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVR- 206
           Q    RA  L+     Q+G       +       +  N++ I    D V L   + E++ 
Sbjct: 267 QDLVVRAFYLTNAEAKQTGAMLKTMLKIREPYIDERANMVVIRESPDVVRLAERLVELQD 326

Query: 207 RDILKQIGF------------QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           R+  + +              Q  I   +S      +A                  +   
Sbjct: 327 RNDSEVVLEVEVLEVSSTKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNSDRIGVS 386

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311
           +   VL+          LA P + A + + A    G +    T +S++    + SV   D
Sbjct: 387 TPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYID 446

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTI 368
            G+ L   P++     + ++I  EVS     +             R A+T ++L  G T 
Sbjct: 447 VGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHDGETQ 506

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +LAGL+K         IP L  IP+LG LF +   N    EI ++ TP +VKP    + +
Sbjct: 507 LLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPETN 566

Query: 429 RPDDHYSVEDDAKA 442
             +     E +A+A
Sbjct: 567 FMEFWSGTETNARA 580


>gi|323946657|gb|EGB42679.1| general secretion pathway protein D [Escherichia coli H120]
          Length = 615

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 109/301 (36%), Gaps = 44/301 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 E 407
            
Sbjct: 613 N 613


>gi|270284835|ref|ZP_06194229.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia muridarum Nigg]
 gi|270288864|ref|ZP_06195166.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia muridarum Weiss]
 gi|301336215|ref|ZP_07224417.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia muridarum MopnTet14]
          Length = 918

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 54/333 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225
            ++  KV++LLN       QV ++V I E   +     G Q +  G   G          
Sbjct: 574 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 633

Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254
                      +   A + G   +   G  +              G++            
Sbjct: 634 NTGVVDPLRNQTPPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 693

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+      +   ++  
Sbjct: 694 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 753

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L  T T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 754 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 812

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D + ++  G+PLLS +P++  LF  +   R++  I I   P ++       +  
Sbjct: 813 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVISSFEEGTVLS 872

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
             + Y    +++     R +    P+ A E + 
Sbjct: 873 NSEGYRYNWESE-----RGSLEVAPRHAPECQN 900


>gi|254228227|ref|ZP_04921656.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           sp. Ex25]
 gi|151939300|gb|EDN58129.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           sp. Ex25]
          Length = 624

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 120/320 (37%), Gaps = 25/320 (7%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----- 174
           +  +   L+R ++    +V   S+  V         +   +V    T  ++ G N     
Sbjct: 213 VPGIASVLKRVVSGVQTQVTSASNKEVTSSDTPVKSNKTASVHGGATVEAEPGLNAIIVR 272

Query: 175 --QYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---S 227
             Q      +K++  L+   + Q  ++V  +I ++  + L Q+G       S        
Sbjct: 273 DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGVSVGNNRIVD 329

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284
                D     V+ G   + K +LD  +       +  LE   + + ++ PTL       
Sbjct: 330 IKTTGDVSSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVE 389

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339
           A   +      K V   T A  +    YG +L   P ++        +I L +  E    
Sbjct: 390 AVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPKINLSLHLEDGAK 447

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +      D+PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR
Sbjct: 448 ITDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 507

Query: 400 NSRFNREETEIFIAATPFLV 419
           ++   +  T       P +V
Sbjct: 508 SNTNTKRRTVRMFILEPRIV 527


>gi|329121951|ref|ZP_08250564.1| type II and III secretion system protein [Dialister micraerophilus
           DSM 19965]
 gi|327467397|gb|EGF12896.1| type II and III secretion system protein [Dialister micraerophilus
           DSM 19965]
          Length = 405

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 15/273 (5%)

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
               +  +   ++ + D+ +      T          A S  + ++  L+I  E QV ++
Sbjct: 114 SYGKSNEIANELKNLTDNVQVASDVGTNSVIVNATPRAMSELEHIIKALDIP-EKQVKVE 172

Query: 200 VTIAEVRRDILKQIGFQH---SITGSS--------SGPSKSFAADFGGKFVSEGGDFSVK 248
             +  V R   K +G      S+TG +        S  +K+        +       S+ 
Sbjct: 173 AEVLAVNRSYAKDLGIDWQFKSLTGQAEQRNVYDKSSKTKTSYLKIPEDYAGISYGKSIT 232

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATS 306
           G    F F+  L+AL      + LA+P +  ++G++A    G +       + + T  TS
Sbjct: 233 GNPYTFFFQAKLNALLSDGKAKILAKPNVVTLNGRTAEILIGSKIPVLVEHMENGTKTTS 292

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +   D G+ L +TP V     I   I  EVS P + V          R+A TTV L SG 
Sbjct: 293 IEYKDAGIKLTYTPNVSKNSEITADIIAEVSTPYL-VPEMKAYRIVTRQAHTTVRLKSGD 351

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            + + GL+  +       +P+L  IPILG LF+
Sbjct: 352 MLTIGGLIDKEEANNIRKVPVLGDIPILGKLFQ 384


>gi|325109742|ref|YP_004270810.1| type II and III secretion system protein [Planctomyces brasiliensis
            DSM 5305]
 gi|324970010|gb|ADY60788.1| type II and III secretion system protein [Planctomyces brasiliensis
            DSM 5305]
          Length = 1315

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 132/358 (36%), Gaps = 50/358 (13%)

Query: 151  VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRD 208
            V  ++   R + +    +S S          ++++ L++       +V ++  + EV  D
Sbjct: 863  VTNLEIMDREIIVVPETVSNSLLISATPRYFEEILTLVHRLDEKPPEVVIQALLVEVELD 922

Query: 209  ILKQIGFQHSITGS-------SSGPSKSF---------AADFGGKFVSEGGDFSVKGVLD 252
               + G Q  +  S        + P  +F          A+          DF++  + +
Sbjct: 923  NDDEFGVQLGLQDSVLFDRSIDNTPGYNFNNQPLGRDTTANPSAVGTQALSDFAMGRLNN 982

Query: 253  RFSF------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
               F              ++ AL     ++ L+ PT+  +  Q A    G Q       +
Sbjct: 983  SLGFGGLVLAASSESVSVLIRALSAKRNVQILSRPTIRTLDNQLAQILVGQQVPIVDGVT 1042

Query: 301  STGATSVTT-----HDYGVVLHFTPTVLSPGRIGLR-IQTEVSEPVIGV---------NA 345
             TG   + T        G++L  TP +   G I +  + T+ S    GV         + 
Sbjct: 1043 ITGTIGIATPQIVQQQVGIILAVTPRISPDGSIVMETVATKSSLSDEGVPIFTDIETGSV 1102

Query: 346  GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             + P   +  A  TV +P+G T+VL G++  D    +  +P +  +PILG  FR    + 
Sbjct: 1103 IESPIINLTTAQATVSVPNGQTVVLGGMITKDEVSFRRNVPWIGDLPILGIPFRYEGKST 1162

Query: 406  EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
              TE+ I  TP ++      ++ +      VE +   F       I+GP  ++    Q
Sbjct: 1163 RRTELLIFLTPRVIYNDIDSEVIK-----RVETERLHFLEKEAEAIHGPLYSAPQAQQ 1215


>gi|104781918|ref|YP_608416.1| secretion type II protein [Pseudomonas entomophila L48]
 gi|95110905|emb|CAK15621.1| Putative secretion type II protein related to gspD (secretin)
           protein [Pseudomonas entomophila L48]
          Length = 611

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 87/402 (21%), Positives = 147/402 (36%), Gaps = 43/402 (10%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            +   D +  +   I +      +E  +   +  + +R ++V+D  +L     + Q ++ 
Sbjct: 208 FIFDRDLRPDMKATIFVRE--VRIEDAVALLLEQNQLRQKIVNDNTLLV-YPDSPQKTKD 264

Query: 160 AVELSET--FLSQSGRNQYAN-------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
             EL     +L+    N   N       +    V   LN          V +AE      
Sbjct: 265 YQELVMRTFYLTSIDANTAMNMLKTMLKTRDVFVDERLNTLTMRDTPDAVRMAEKLLQSQ 324

Query: 211 KQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVLDRFSFE------ 257
            Q   +  +       + S   D G       G   S+G   SV   L            
Sbjct: 325 DQSNPEVVLEVEVMEVATSRILDLGLQWPNTFGVLTSDGKSVSVLDQLRGIDSSRISISP 384

Query: 258 ---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT 308
                ++A  +   I TLA P +   + + A    G +    + +S           SVT
Sbjct: 385 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 442

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS-YRVRKADTTVELPSG 365
             D G+ L   PTV     + +++  EVS   P+     G +P     R A T++ L  G
Sbjct: 443 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 502

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T VLAGL+++D       IP L  IP LG LF +++ +  ++E+ +A TP +V+ +  +
Sbjct: 503 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLPYQ 562

Query: 426 DLSRPDDHYSVEDDAKAFFFNR----VNKIYGPKEASEVEGQ 463
             S  +     E   +     R     +    P     VEGQ
Sbjct: 563 SPSDMEFGTGTESSMQVRQMARPLPASDGDQPPGSVPMVEGQ 604


>gi|15606033|ref|NP_213410.1| hypothetical protein aq_585 [Aquifex aeolicus VF5]
 gi|2983222|gb|AAC06820.1| hypothetical protein aq_585 [Aquifex aeolicus VF5]
          Length = 705

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 106/239 (44%), Gaps = 14/239 (5%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----GDFSVKGVL 251
           + ++  + EV + +L+++G       S +   + +  +   + V+ G    G  +     
Sbjct: 465 IKIRAKLVEVEKSLLRELGISWRTVFSKAYIPEFWQGETAFRTVTPGQPQSGLLTFTFQR 524

Query: 252 DRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-- 308
           +R +  E  L A E+    + +AE  +  ++G+ A  +SG +     VS S G  +V   
Sbjct: 525 NRLNLLEFKLLAYEQEGRAKNVAESYVITVNGEPAVISSGLEFPVTEVSLSGGIANVEPK 584

Query: 309 THDYGVVLHFTPTVLSPGRIGL-------RIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
                +VL  TP VL  G I L       +I +    PV       +P +   + D  + 
Sbjct: 585 YESIPIVLITTPVVLPDGNILLSVYLARRQINSVQEFPVTQTLTQKIPVFSTSRIDVKIP 644

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +G T+V+ G ++      + G+P L ++P+LG LF+       + E+ I  TP +++
Sbjct: 645 IKNGETVVIGGAVEKSDSITESGVPKLREVPLLGWLFKTQTKQLRDRELLIFITPEIIE 703


>gi|319956469|ref|YP_004167732.1| pilus (msha type) biogenesis protein mshl [Nitratifractor
           salsuginis DSM 16511]
 gi|319418873|gb|ADV45983.1| pilus (MSHA type) biogenesis protein MshL [Nitratifractor
           salsuginis DSM 16511]
          Length = 511

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 113/271 (41%), Gaps = 30/271 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---------GPSKSFAADFGGKFVSEGG 243
           + +V + V I +VR +     G   +   ++S         G + S   +   K  S+ G
Sbjct: 240 KTEVMIDVRIIDVRINNNHSYGIDWNKIFNTSIRFTGDVTHGTTNSVTHNVSLKDGSDIG 299

Query: 244 DFSVKGVLD---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-TVS 299
           D+   G +          VL  L+    +  ++ P +  ++ Q A  + G +  YK T +
Sbjct: 300 DYLPGGGISFTFSGDLTEVLKFLKTQGDVTVVSSPRVMTLNNQPAMISVGQEIYYKLTTT 359

Query: 300 SSTGATSVTTHD--------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--- 348
           +  G +   T +         G++L  TP V   G I L+I   ++      +A ++   
Sbjct: 360 NKVGGSDTATSENEEVKSVFAGILLDITPEVDERGMITLKINPSITALANEEDAKNLQGV 419

Query: 349 ----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P  + R+  + +++  G   +L GL+       +EG+P+L  IPILG  F+  +  
Sbjct: 420 RTMPPDIKRRQIASVIKIKDGDHAILGGLITRGHGTKEEGLPVLENIPILGYAFKKEQKI 479

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
               E+ +  TP +++    R+++  D  Y 
Sbjct: 480 DYTDELVLIITPHIIRN--NRNVTLKDLGYR 508


>gi|78223066|ref|YP_384813.1| type II and III secretion system protein [Geobacter metallireducens
           GS-15]
 gi|78194321|gb|ABB32088.1| type II and III secretion system protein [Geobacter metallireducens
           GS-15]
          Length = 861

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/352 (22%), Positives = 148/352 (42%), Gaps = 42/352 (11%)

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG---RNQYANSSSKKVMN 186
               +  + +   D VV    + T+ D+++AV L  T L         +      +    
Sbjct: 253 IFPKTPEKSKQYEDLVVKTFFLNTL-DAKKAVNLLRTMLQVRKVYVNEELNAIVVRDTSE 311

Query: 187 LLNIAGE---------DQVTLKVTIAEVRRDILKQIGF---QHSITGSSSGPSKSFAAD- 233
           L+++AG+          +V L V + EV +  ++  G    +++++ ++  P   F  D 
Sbjct: 312 LVDVAGKILEANDVPDAEVLLDVEVIEVSKRNIENFGLALSKYAVSLNTQTPGGGFLNDT 371

Query: 234 FGGKFVSEGGDFSVKG-----VLDRFSFE----------TVLHALERATAIRTLAEPTLT 278
           F    VS     +++G     +L  FS+                 +  T    LA P + 
Sbjct: 372 FSRASVSSSTGTTIQGTAGSELLQTFSWNGYSGFMTVPSASYSFGKSITNAEVLANPKIR 431

Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
             + + + FT G +    T S++      + +V   D GV L+  PT++    + +++  
Sbjct: 432 VKNREKSKFTVGTRVPITTTSTTGTTGGFSVNVQYVDVGVKLNAEPTIMLNNEVSIKLGL 491

Query: 335 EVSEPVIGVNAG------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           EVS  +     G       + +   R  DT + L  G T V+ GL++D+ Q+ K+ I LL
Sbjct: 492 EVSSIIDKQTVGGTDSATTVVTIGTRNLDTVLNLKDGETSVIGGLIEDNKQKGKQKIFLL 551

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
             IPI+G L  N+  + ++ E+ +A TP LV+ V + +          EDD 
Sbjct: 552 GDIPIIGPLLSNNSNDNQKRELILAITPRLVRSVTVPEPDLVSFWSGKEDDP 603


>gi|182679972|ref|YP_001834118.1| general secretion pathway protein D [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635855|gb|ACB96629.1| general secretion pathway protein D [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 803

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 9/239 (3%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG- 249
               QV ++VT+AEV        G Q  +  S+       +A      +           
Sbjct: 542 RPPVQVEIEVTVAEVTLTDALNYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNL 601

Query: 250 -VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--- 305
            +    +   V++AL   T ++ L+ P+L  +  Q A    G Q    +  +++  T   
Sbjct: 602 MIGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANP 661

Query: 306 ----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
               SV   D G++L+  P V + G + L I+ ++S           P+   R+  +T+ 
Sbjct: 662 AIVNSVNYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIA 721

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P+G T++LAGL+++     + G+P++SKI  L  L  N   +   TE+ +   P +++
Sbjct: 722 IPNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILR 780


>gi|312972778|ref|ZP_07786951.1| general secretion pathway protein D [Escherichia coli 1827-70]
 gi|310332720|gb|EFP99933.1| general secretion pathway protein D [Escherichia coli 1827-70]
          Length = 613

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 109/300 (36%), Gaps = 44/300 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   ++
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKK 612


>gi|262394108|ref|YP_003285962.1| type III secretion system outer membrane pore YscC [Vibrio sp.
           Ex25]
 gi|262337702|gb|ACY51497.1| type III secretion system outer membrane pore YscC [Vibrio sp.
           Ex25]
          Length = 604

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 120/320 (37%), Gaps = 25/320 (7%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----- 174
           +  +   L+R ++    +V   S+  V         +   +V    T  ++ G N     
Sbjct: 193 VPGIASVLKRVVSGVQTQVTSASNKEVTSSDTPVKSNKTASVHGGATVEAEPGLNAIIVR 252

Query: 175 --QYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---S 227
             Q      +K++  L+   + Q  ++V  +I ++  + L Q+G       S        
Sbjct: 253 DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGVSVGNNRIVD 309

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284
                D     V+ G   + K +LD  +       +  LE   + + ++ PTL       
Sbjct: 310 IKTTGDVSSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVE 369

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339
           A   +      K V   T A  +    YG +L   P ++        +I L +  E    
Sbjct: 370 AVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPKINLSLHLEDGAK 427

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +      D+PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR
Sbjct: 428 ITDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 487

Query: 400 NSRFNREETEIFIAATPFLV 419
           ++   +  T       P +V
Sbjct: 488 SNTNTKRRTVRMFILEPRIV 507


>gi|116747987|ref|YP_844674.1| type IV pilus secretin PilQ [Syntrophobacter fumaroxidans MPOB]
 gi|116697051|gb|ABK16239.1| type IV pilus secretin PilQ [Syntrophobacter fumaroxidans MPOB]
          Length = 636

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 113/261 (43%), Gaps = 13/261 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--FAADFGG 236
           ++++ ++N L+     QV ++  I  +  ++ + +G      G +   S +  F      
Sbjct: 382 NNARMLLNRLDRPTS-QVLIEARIITLTSEVKRSLGMNLGFGGDTPNHSATVPFTDFLIN 440

Query: 237 KFVSEGGDFSVKGVLDRFSF--ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
              +     ++  ++       +  + ALE A  IR +A P +  ++   A  + G Q  
Sbjct: 441 SPPANLFALNLAQMVGTTLLKVDLTISALETADEIRIMAAPRVLTMNNVKAVISQGVQIP 500

Query: 295 Y-KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYR 352
           Y K   +++  T     D  + L  TP +    ++ + I+ +  EP   V      P   
Sbjct: 501 YLKVGDTASNITGTDFKDAVLELAVTPHITPDHKVRMTIEAKQDEPSSTVTGAQGQPGID 560

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            RK  T + +  G  IV+ G++++  +  K   P LS +PILG LF+++  + +  EI I
Sbjct: 561 TRKISTELLVDDGNIIVIGGIIRNRDEAKKTATPGLSDVPILGRLFKSNEVDAQRNEILI 620

Query: 413 AATPFLVKPVAMRDLSRPDDH 433
              P +V      D+++P D 
Sbjct: 621 FICPKIV------DVTKPSDR 635


>gi|323173796|gb|EFZ59425.1| general secretion pathway protein D [Escherichia coli LT-68]
          Length = 613

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 109/300 (36%), Gaps = 44/300 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                   +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                T S+     S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   ++
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKK 612


>gi|171060459|ref|YP_001792808.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
 gi|170777904|gb|ACB36043.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
          Length = 596

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 153/422 (36%), Gaps = 66/422 (15%)

Query: 96  QANVILIGHD-GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           ++ + L     G+ +  L +  +  +  L+        ++  +     +  V   ++R  
Sbjct: 105 RSTLFLTDARVGEALEVLLLSQQLAMRALDGRTALIYPNTPAKQRTYGELQVRTFVLRHT 164

Query: 155 QDSQRAVEL-----SETFLSQSGRNQYANSSSKKVMNL------LNIAGEDQVTLKVTIA 203
           + +  A  L     S++ ++    N      + +V+ L      +N      V ++V + 
Sbjct: 165 EAATMATLLKSLVKSQSIVTDPRSNTLVLRDTPEVLQLAEQLIAINDRPSGDVVIEVQLI 224

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           EV R  L ++G     + S + P+   +A   G   + GGD  +   L        L+  
Sbjct: 225 EVNRQRLSRLGLSWPTSLSIATPA---SATTLGALRALGGDAWLASPLALG-----LNLQ 276

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------------------------ 299
            +      +A P++ A   + A    G +    T                          
Sbjct: 277 LQDIGATVIANPSVRARHKEKARLLIGDKVPVMTTQLASMGGSGASAAAPATTAPVTAAE 336

Query: 300 -----------SSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
                      +  G T     SV   D G  L   P V + G + L I  E+S+    +
Sbjct: 337 GQAGQAEQAGQAGDGGTVMFSGSVQYIDVGFKLEVEPQVHADGDVDLDIDIELSQITQTL 396

Query: 344 NAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +     +Y+  VR+A T++ L  G T  L GL++   +    G+P LS++P++G LF   
Sbjct: 397 DTDSGVAYQLGVRQAQTSMRLRDGETQWLGGLIRRQERAAMSGLPGLSQLPVIGRLFGLE 456

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             +  +TE+ +A TP + +PV       P     V+    A    R  ++  P       
Sbjct: 457 SQDTADTELVLAVTPRIARPVPP----LPAGGALVDAGLDAQAGARPIRMQAPSAGEAAA 512

Query: 462 GQ 463
           G 
Sbjct: 513 GP 514


>gi|313200626|ref|YP_004039284.1| type II and iii secretion system protein [Methylovorus sp. MP688]
 gi|312439942|gb|ADQ84048.1| type II and III secretion system protein [Methylovorus sp. MP688]
          Length = 645

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 135/307 (43%), Gaps = 25/307 (8%)

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
            ++  +   ++ ++   +T+V+      I+ +++ +   +    +          +++ +
Sbjct: 293 MIKTVVKSKDVYIDEKLNTLVMRDTPEAIRTAEKLIMSQDMAEPEVVLEVEVLEINRRSL 352

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
             + I     V++ V      RD         ++ G+++             F S+ G F
Sbjct: 353 EAIGIRYPSAVSVGVQ----GRD---------TVNGTTTLSPGELTVRELKNFNSDLGVF 399

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG- 303
           S+   +        L+ L++ T    LA P +   + + A    G +    T +++STG 
Sbjct: 400 SISDPV------LALNLLQQDTDTNLLANPRIRVKNREKAKIHVGDRIPVLTSIANSTGF 453

Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTT 359
            + SV+  + G+ L   PTVL    + +++  EVS     + +       +   R A+T 
Sbjct: 454 VSQSVSYIEVGIKLDVEPTVLLNDEVSIKVGLEVSNQTDKITSSSGTVTYTIGTRNANTM 513

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L +G T VLAGLL+DD Q++   +P L+ +P++G LF +   +R + EI +  TP ++
Sbjct: 514 LRLKNGETQVLAGLLRDDEQKISNKVPGLANLPLIGKLFTDRNTDRTKKEIALLITPRII 573

Query: 420 KPVAMRD 426
             +   D
Sbjct: 574 SNITPAD 580


>gi|182678562|ref|YP_001832708.1| general secretion pathway protein D [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634445|gb|ACB95219.1| general secretion pathway protein D [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 801

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 9/239 (3%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG- 249
               QV ++VT+AEV        G Q  +  S+       +A      +           
Sbjct: 540 RPPVQVEIEVTVAEVTLTDALNYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNL 599

Query: 250 -VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--- 305
            +    +   V++AL   T ++ L+ P+L  +  Q A    G Q    +  +++  T   
Sbjct: 600 MIGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANP 659

Query: 306 ----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
               SV   D G++L+  P V + G + L I+ ++S           P+   R+  +T+ 
Sbjct: 660 AIVNSVDYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIA 719

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P+G T++LAGL+++     + G+P++SKI  L  L  N   +   TE+ +   P +++
Sbjct: 720 IPNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILR 778


>gi|39996877|ref|NP_952828.1| type II secretion system protein [Geobacter sulfurreducens PCA]
 gi|39983765|gb|AAR35155.1| type II secretion system protein, putative [Geobacter
           sulfurreducens PCA]
 gi|298505890|gb|ADI84613.1| type II secretion system secretin lipoprotein PulQ [Geobacter
           sulfurreducens KN400]
          Length = 822

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/335 (20%), Positives = 133/335 (39%), Gaps = 44/335 (13%)

Query: 153 TIQDSQRAVELSETFLSQSG---RNQYANSSSKKVMNLLNIAGE---------DQVTLKV 200
              D+++AV L  T L         +      +    L+++AG+          +V L+V
Sbjct: 275 NSLDAKKAVNLLRTMLQVKKIYVNEELNALVIRDNPELIDVAGKILEANDVPDAEVLLEV 334

Query: 201 TIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVK 248
            + +V ++  +  G   S     +   + G    F +D             +      VK
Sbjct: 335 EVIQVSKNNSELFGLGLSRYAVSLNARTPGSGGDFFSDTFDPKVTTTSNDTTTVTTTQVK 394

Query: 249 GVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +L+ F++              +  ++ +    L+ P +   + + + FT G +    T 
Sbjct: 395 NLLNLFNWNGYQGFLTVPSATYNFSKQLSNAEVLSNPKIRVKNREKSKFTVGTRVPITTT 454

Query: 299 SSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------M 348
           SS+        +V   D GV L+  P +     + +++  EVS  +     G       +
Sbjct: 455 SSTGSVGGVTVNVQYVDVGVKLNAEPVIQLNNEVTIKLGVEVSSIIGEKTVGSGDAISSV 514

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            +   R  DT + L  G T ++ GL++D   + K+ I LL  IP++G+L  +     +++
Sbjct: 515 VTIGTRNVDTVLNLKDGETSIIGGLIEDTKSKSKQKIWLLGDIPLIGSLLSSHNDRYDKS 574

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           E+ +A TP +V+ V++ +          EDD  A 
Sbjct: 575 ELVLAITPRIVRAVSVPEADVAAFWSGKEDDPTAV 609


>gi|170721649|ref|YP_001749337.1| type II and III secretion system protein [Pseudomonas putida W619]
 gi|169759652|gb|ACA72968.1| type II and III secretion system protein [Pseudomonas putida W619]
          Length = 625

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/399 (21%), Positives = 147/399 (36%), Gaps = 45/399 (11%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            +   D +  +   I +      +E  +   +  + +R ++V+D  +L     + Q ++ 
Sbjct: 212 FIFDKDLRPDMKATIFVRE--VRIEDAIALLLEQNQLRQKIVNDNTLLV-YPDSPQKTKD 268

Query: 160 AVELSET--FLSQSGRNQYANSSSK-------KVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
             EL     +L+    N   N            V   LN          V +AE      
Sbjct: 269 YQELVMRTFYLTSIDANTALNMVKTMLKTRDVFVDERLNTLTMRDTPDAVRMAEKLLQSQ 328

Query: 211 KQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVLDRFSF------- 256
            Q   +  +       ++S   D G       G    EG   SV   L   +        
Sbjct: 329 DQSNPEVVLEVEVMEVARSRILDLGLQWPNTFGVLSDEGNPVSVLDQLRGINSGRISISP 388

Query: 257 --ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT 308
             +  ++A  +   I TLA P +   + + A    G +    + +S           SVT
Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS-YRVRKADTTVELPSG 365
             D G+ L   PTV     + +++  EVS   P+     G +P     R A T++ L  G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEPTRQGTIPVQVDTRNAQTSLRLHDG 506

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T VLAGL+++D       IP L  IP LG LF ++R +  ++E+ +A TP +V+ +  +
Sbjct: 507 ETQVLAGLVRNDKTSSGNKIPGLGDIPGLGRLFGSNRDDMSKSELVLAITPRIVRNLPYQ 566

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
             S  +     E   +      V ++  P  A  +    
Sbjct: 567 SPSDMEFATGTESSMQ------VRQLALPLPAGALPADE 599


>gi|47420041|gb|AAT27370.1| pIV [VCSM13 interference-resistant helper phage]
          Length = 426

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 18/268 (6%)

Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           LS  G N    S+ K +++ L           DQ+ ++  I EV++     + F  +   
Sbjct: 164 LSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA--LDFSFAAGS 221

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                +     D     +S  G     G+ +       + AL+  +  + L+ P +  +S
Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279

Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           GQ  S + G    + T        + +    ++   + G+ +   P  ++ G I L I +
Sbjct: 280 GQKGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITS 339

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +         A D+ +   R   TTV L  G T++L GL          G+P LSKIP++
Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422
           G LF +   + EE+ +++     +V+ +
Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|166211|gb|AAA32218.1| protein IV [Enterobacteria phage f1]
 gi|58091841|gb|AAW65343.1| gene IV protein [synthetic construct]
 gi|58091857|gb|AAW65354.1| gene IV protein [synthetic construct]
 gi|153902269|dbj|BAF74211.1| protein IV [Enterobacteria phage f1]
 gi|262064184|gb|ACY07165.1| IV [Enterobacteria phage f1]
          Length = 426

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 18/268 (6%)

Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           LS  G N    S+ K +++ L           DQ+ ++  I EV++     + F  +   
Sbjct: 164 LSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA--LDFSFAAGS 221

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                +     D     +S  G     G+ +       + AL+  +  + L+ P +  +S
Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279

Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           GQ  S + G    + T        + +    ++   + G+ +   P  ++ G I L I +
Sbjct: 280 GQKGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITS 339

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +         A D+ +   R   TTV L  G T++L GL          G+P LSKIP++
Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422
           G LF +   + EE+ +++     +V+ +
Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|17426227|ref|NP_510894.1| phage assembly protein [Enterobacteria phage M13]
 gi|138050|sp|P03665|G4P_BPM13 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|14969|emb|CAA23865.1| phage assembly protein [Enterobacteria phage M13]
          Length = 426

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 18/268 (6%)

Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           LS  G N    S+ K +++ L           DQ+ ++  I EV++     + F  +   
Sbjct: 164 LSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA--LDFSFAAGS 221

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                +     D     +S  G     G+ +       + AL+  +  + L+ P +  +S
Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279

Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           GQ  S + G    + T        + +    ++   + G+ +   P  ++ G I L I +
Sbjct: 280 GQKGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITS 339

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +         A D+ +   R   TTV L  G T++L GL          G+P LSKIP++
Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422
           G LF +   + EE+ +++     +V+ +
Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|71906532|ref|YP_284119.1| type II and III secretion system secretin [Dechloromonas aromatica
           RCB]
 gi|71846153|gb|AAZ45649.1| type II and III secretion system protein:Secretin,
           N-terminal:Secretin/TonB, short N-terminal
           [Dechloromonas aromatica RCB]
          Length = 585

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 101/292 (34%), Gaps = 53/292 (18%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----------------------- 218
            + +    +  E QV L+  I EV  +   Q G   S                       
Sbjct: 264 DEYLKATQLVVERQVMLEAKIIEVSLNDSYQTGINWSKFGGIANRFSLGIAAPSATLAGS 323

Query: 219 --ITGSSSGPSKSFA-----ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
             I+GS++G S   A        G       G           +F  +L  LE    ++ 
Sbjct: 324 GVISGSAAGVSGGTAVAAVPGSGGAMATGPTGRGFFGLTFQSNNFAALLSFLEGQGDVQV 383

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSST-------------GATSVTTHDYGVVLHF 318
           L+ P +   + Q A    G    + T  S+                 ++     G+ L  
Sbjct: 384 LSSPRIATTNNQKAVLKVGTDDYFVTGISTNVTTGTGTGGNVVTPNITLQPFFSGISLDV 443

Query: 319 TPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYR-------VRKADTTVELPSGGTI 368
           TP +   G I L +   VS        VN GD+ +Y        + ++D+ V +  G  +
Sbjct: 444 TPQIDDEGNIILHVHPSVSVVEEKSKSVNLGDLGTYTLPLASSTINESDSIVRVQDGSIV 503

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + GL+  +    + G+P +S +P LG LF     +  + E+ I     +++
Sbjct: 504 AIGGLMSQEQNTNRYGLPGISGVPGLGLLFGQKSVSNRKRELVILMKSTVIR 555


>gi|83746420|ref|ZP_00943472.1| GspE-related protein [Ralstonia solanacearum UW551]
 gi|83726961|gb|EAP74087.1| GspE-related protein [Ralstonia solanacearum UW551]
          Length = 744

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 140/374 (37%), Gaps = 33/374 (8%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--HGMVRTIQDS 157
            ++  D +  L   + I +  A LE  L   ++ + +  +M++ + +L         +D 
Sbjct: 192 FILDKDVRPDLKTTVFIRQ--AKLEDALDLILSTTQLNKKMMNGSTILIYPNTPEKQRDY 249

Query: 158 Q----RAVELSETFLSQSGRN-----QYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVR- 206
           Q    RA  L+     Q+G       +       +  N++ I    D V L   + E++ 
Sbjct: 250 QDLVVRAFYLTNAEAKQTGAMLKTMLKIREPYIDERANMVVIRESPDVVRLAERLVELQD 309

Query: 207 RDILKQIGF------------QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           R+  + +              Q  I   +S      +A                  +   
Sbjct: 310 RNDSEVVLEVEVLEVSSTKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNSDRIGVS 369

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311
           +   VL+          LA P + A + + A    G +    T +S++    + SV   D
Sbjct: 370 TPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYID 429

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTI 368
            G+ L   P++     + ++I  EVS     +             R A+T ++L  G T 
Sbjct: 430 VGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHDGETQ 489

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +LAGL+K         IP L  IP+LG LF +   N    EI ++ TP +VKP    + +
Sbjct: 490 LLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPETN 549

Query: 429 RPDDHYSVEDDAKA 442
             +     E +A+A
Sbjct: 550 FMEFWSGTETNARA 563


>gi|124514518|gb|EAY56031.1| putative type II secretion system protein D [Leptospirillum
           rubarum]
          Length = 610

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 47/320 (14%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             +E TLR+ I  + +  +  + TV + G V+ +  +QR +++    L +          
Sbjct: 271 DKMEGTLRKMIPKATVSADSKAQTVSVKGTVQDVFQAQRYLDIVRDQLRRE--------- 321

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGK 237
                          V  ++ IAE+        G   +        S    + A      
Sbjct: 322 ---------------VFFRIDIAEIDLTDKDAYGINWNALAHGVFNSTLALTGAGAGNAG 366

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             S GG  +  G    F    V+ ALE    +  + +P +  +SGQ  S  +     Y  
Sbjct: 367 LASTGGVTTPYGA--SFGSAAVIQALETIGRVHIINQPYVGTVSGQPVSLNATTDIPYLQ 424

Query: 298 V----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR-------IQTEVSEPV 340
                      S++     +     G+ L  TPT L   ++ +        +Q  V+  +
Sbjct: 425 GEYPFFAGGLSSATETIPQIGYVPVGINLEVTPT-LEGDQVHMHGTVVVNSLQQFVTIDI 483

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            G+     P    R   T +    G T+V+ GL+ +   +    +P L +IP+L  LF  
Sbjct: 484 KGIGTFQNPEVNSRSQTTEITARDGQTVVIGGLMANTKNKTFWSVPFLGQIPVLKWLFSG 543

Query: 401 SRFNREETEIFIAATPFLVK 420
             + ++ TE+ +  TP + +
Sbjct: 544 YSYKKQVTELVVIITPEIRR 563


>gi|78777581|ref|YP_393896.1| type II and III secretion system protein [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498121|gb|ABB44661.1| type II and III secretion system protein [Sulfurimonas
           denitrificans DSM 1251]
          Length = 563

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 105/318 (33%), Gaps = 61/318 (19%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
           ++ +  L    + QV + V +  V     K  G   S   +    + +F           
Sbjct: 226 EEYLKKLQDKVQLQVLIDVQLLSVTLSDGKTTGVDWSQLYNLQNMNLTFNKAKRTNVHGA 285

Query: 232 ---------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFET 258
                                             D  G          +  +   F+   
Sbjct: 286 TWDSAYEGDTVEGLLLRDKRVEAAQSNIETYGLEDLAGVRTPVDATSKLLTISSNFTINN 345

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHD- 311
           ++  L+    + +++ P +  ++ Q A  T+G ++ YK +S S       G+ +    D 
Sbjct: 346 IIKFLKTQGDVSSISNPKVLTLNNQPALITAGTEYFYKIISDSLSTAGTGGSVTTQNQDL 405

Query: 312 ----YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKADTTVE 361
                GV+L  TP +     I L+I   +SE    ++          P  R R+  + V 
Sbjct: 406 QSVFAGVLLDITPEISDDNMITLKINPSLSETTTDISITPGVERTMPPDLRRRQLSSVVT 465

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L  G  I+L GL+          +P+L  IPIL  LF+     +   E+ I   P +V  
Sbjct: 466 LRDGERIILGGLINTSNSIDVNKVPILGDIPILNYLFKYENRLKTTQELVIVIEPHIVT- 524

Query: 422 VAMRDLSRPDDHYSVEDD 439
               +LS  +  Y     
Sbjct: 525 KRKNNLSLSELGYQTLSS 542


>gi|251773365|gb|EES53914.1| putative type II secretion system protein D [Leptospirillum
           ferrodiazotrophum]
          Length = 604

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 124/343 (36%), Gaps = 52/343 (15%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             LE+TLR+ I  + +  +  S TV + G VR +  +QR +++    L +          
Sbjct: 264 DKLEITLRKTIPHAVVSADPKSQTVSVRGTVRDVYLAQRYLDIVRDQLRRE--------- 314

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---SSGPSKSFAADFGGK 237
                          V  ++T+AE+        G   S       +S  S +        
Sbjct: 315 ---------------VFFRITVAEIDLSDANAYGINWSAMAKGVFNSTLSLTSGGTSNAG 359

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             + GG  +  G    F    V+ AL+    +  L +P +  +SGQ  S  +     Y  
Sbjct: 360 LSATGGVATPYGA--TFGQTAVIQALDTIGRVHVLNQPYVGTVSGQPVSLNATTNIPYLQ 417

Query: 298 V----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR-------IQTEVSEPV 340
                      S++     +     GV L  TPT L   +I L        +Q  V+  +
Sbjct: 418 GEYPFFAGGLSSATETLPQIAYAAVGVNLEVTPT-LEGDQIHLHGTVVVNTLQQMVTINI 476

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             +     P    R   T +    G TIV+ GL+ +   +    IP L  IP L  LF  
Sbjct: 477 KNIGEFQNPQINTRSETTEITAHDGQTIVIGGLMANTKNKQFWTIPFLGSIPGLKWLFSG 536

Query: 401 SRFNREETEIFIAATPFL-----VKPVAMRDLSRPDDHYSVED 438
             + ++ TE+ I  TP +     +   +  ++  PD  +  + 
Sbjct: 537 YNYQKQVTELAILITPEIKKTPRLDAASTEEMMDPDGRFYRKS 579


>gi|153902280|dbj|BAF74221.1| protein IV [Enterobacteria phage f1]
          Length = 426

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 18/268 (6%)

Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           LS  G N    S+ K +++ L           DQ+ ++  I EV++     + F  +   
Sbjct: 164 LSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA--LDFSFAAGS 221

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                +     D     +S  G     G+ +       + AL+  +  + L+ P +  +S
Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279

Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           GQ  S + G    + T        + +    ++   + G+ +   P  ++ G I L I +
Sbjct: 280 GQKGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITS 339

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +         A D+ +   R   TTV L  G T++L GL          G+P LSKIP++
Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422
           G LF +   + EE+ +++     +V+ +
Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|282856386|ref|ZP_06265665.1| putative type IV pilus biogenesis protein PilQ [Pyramidobacter
           piscolens W5455]
 gi|282585757|gb|EFB91046.1| putative type IV pilus biogenesis protein PilQ [Pyramidobacter
           piscolens W5455]
          Length = 566

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 114/330 (34%), Gaps = 51/330 (15%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           L+         + + V+   + +V+ G     +  +R + L                   
Sbjct: 260 LKELAELHSPANRVLVDERQNLIVVTGTAFQQEKVRRTLRL------------------- 300

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQI------GFQHSITGSSSGPSKSFAADFGG 236
                L+  G  QV LK  I EV  D   Q+       +        +G   +  A  G 
Sbjct: 301 -----LDAPG-RQVMLKARIIEVNDDASDQLETALNAVYDWWWGSYQNGALSAGFAQSGR 354

Query: 237 KFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTA 279
           K  +  G                              +  L  L      R LA+PT+T 
Sbjct: 355 KPGTAEGALGNLDTSANLPGEIGSGIVQLAGTATRMLDFRLRTLVEQKKARVLADPTVTV 414

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EV 336
           + G+ A+     +  Y +        +    + G  L  TP +   G I + +     EV
Sbjct: 415 LDGEKATVKLVEKLKYVSRRDDAQNPTYDDEEVGPKLEVTPRIGRSGMITVSVSLATGEV 474

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
            + + G     +P    R  +T + +  G   V+ GL K+   + +  +P+LS IP++G 
Sbjct: 475 IQWIRGGQGEQIPQTNSRTVETKIRVRDGEPFVIGGLFKESRSRTRASVPILSSIPLIGE 534

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           LF+     +  +++ +   P++++   + D
Sbjct: 535 LFKAKLDKKTRSQVVMILIPYILEIPDLAD 564


>gi|138046|sp|P03666|G4P_BPF1 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|14983|emb|CAA23875.1| unnamed protein product [Enterobacteria phage f1]
          Length = 426

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 18/268 (6%)

Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           LS  G N    S+ K +++ L           DQ+ ++  I EV++     + F  +   
Sbjct: 164 LSVDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA--LDFSFAAGS 221

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                +     D     +S  G     G+ +       + AL+  +  + L+ P +  +S
Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279

Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           GQ  S + G    + T        + +    +V   + G+ +   P  ++ G I L I +
Sbjct: 280 GQKGSISVGQNVPFITGRVTGESANVNNPFQTVERQNVGISMSVFPVAMAGGNIVLDITS 339

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +         A D+ +   R   TTV L  G T++L GL          G+P LSKIP++
Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422
           G LF +   + EE+ +++     +V+ +
Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|330815113|ref|YP_004358818.1| secretion type II protein gspD [Burkholderia gladioli BSR3]
 gi|327367506|gb|AEA58862.1| secretion type II protein gspD [Burkholderia gladioli BSR3]
          Length = 847

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 154/413 (37%), Gaps = 63/413 (15%)

Query: 75  TKADVVVHSPRTMYLFG---KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR-- 129
              DV+  S    +LF    K   +  + L        ++  +        L   +    
Sbjct: 210 QIFDVISRSSGMNFLFDRDVKTDQRTTIFL----KNSTIDATVRYVLATNGLAQQVLDEN 265

Query: 130 ---FIADSNIRVEMVSDTVV------------LHGMVRTIQDSQRAVELSETFLSQSGRN 174
                 ++  +++   +  V            +   ++TI   +  V   +  +      
Sbjct: 266 TVLIYPNTPAKLKDYQELAVRTFFLSNTEAKTIANTLKTILKVRDVVADEKLNMVIVRDT 325

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------------- 218
             A   ++++++L ++   + V L+V + EV+R+    +G                    
Sbjct: 326 PDAIRMAERLVSLEDVPEPE-VMLEVEVLEVQRNNELNLGVAWPGSVNVTPLPLGSVIAP 384

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV----------------LDRFSFETVLHA 262
           +TG ++  +  +     G     G      G                 +   S +  ++A
Sbjct: 385 VTGQNTNTNTPYYPYGYGGGFGGGFGGGSNGTSPALTMNDLLHQTVRTIGLSSLQATVNA 444

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHL-YKTVSSSTG--ATSVTTHDYGVVLHFT 319
             + + ++ L  P +   + + A    G +   + + ++STG  + SV   D G+ L+  
Sbjct: 445 NVQDSTVKLLTNPRIRVRNHEKAKILIGERVPNFTSTATSTGFLSQSVNYLDIGLTLNVE 504

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKD 376
           PTV     +G+++  EVS     +      +      R A T ++L +G T VLAGL+ +
Sbjct: 505 PTVYLDDTVGIKLALEVSSLGNTITTTTGTAAYQIGTRTASTVLQLKNGETDVLAGLIDN 564

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + +     +P L ++P+LG LF  +    + TEI +A TP LV+ +   D   
Sbjct: 565 EERTSGNKLPGLGQLPVLGRLFGATDDQAKNTEIVLAITPHLVRNIRRPDADL 617


>gi|254496546|ref|ZP_05109416.1| type II protein secretion LspD [Legionella drancourtii LLAP12]
 gi|254354245|gb|EET12910.1| type II protein secretion LspD [Legionella drancourtii LLAP12]
          Length = 482

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 116/283 (40%), Gaps = 26/283 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K+V+  L+I    Q+ ++  +AE+ ++    +G +   +   +G +  F   F       
Sbjct: 184 KRVIAQLDIK-PAQLLIEALVAEINQEDANDLGIEWG-SDQQTGKASGFRNGFA------ 235

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----- 296
                +        F+  ++AL RA     L+ P++  +  + A    G Q         
Sbjct: 236 ----IINSQTKGADFQAQIYALARAHKANILSTPSVVVLDNRQAKILVGKQVSVASSNYP 291

Query: 297 -----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMP 349
                T +SS+  T+    +  + L+  P +     I ++I       +P +       P
Sbjct: 292 NNANGTAASSSPYTTFDRVNVALHLYVRPQITRGNGIQMQIDQGNDTLDPPVAAETSTTP 351

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++R+    T+V + SG  +VL GL +D +      +P+L  IP +G LF+ +   R++  
Sbjct: 352 TFRISSIVTSVHVESGNVVVLGGLTQDSLSNDNNRLPILGDIPGIGRLFKRNVNTRDKRV 411

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           + +   P +++     +++   D Y+     +  +  R  + Y
Sbjct: 412 LMVFIKPIILRN-ERENMNLTHDKYNHTRQYELDWL-RSEEQY 452


>gi|138047|sp|P03664|G4P_BPFD RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|8489183|gb|AAF75602.1|AF217317_5 morphogenetic protein IV [Filamentous phage cloning vector fd-tet]
 gi|215404|gb|AAA32312.1| IV [Enterobacteria phage fd]
 gi|8698959|gb|AAF78531.1| protein IV [Filamentous phage display vector fMCS1]
 gi|21667075|gb|AAM73892.1| morphogenetic protein IV [Filamentous phage display vector f8-5]
 gi|21667089|gb|AAM73904.1| morphogenetic protein IV [Filamentous phage display vector c8-4]
 gi|223541|prf||0812197E DNA,phage
          Length = 426

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 18/268 (6%)

Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           LS  G N    S+ K +++ L           DQ+ ++  I EV++     + F  +   
Sbjct: 164 LSVDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA--LDFSFAAGS 221

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                +     D     +S  G     G+ +       + AL+  +  + L+ P +  +S
Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279

Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           GQ  S + G    + T        + +    +V   + G+ +   P  ++ G I L I +
Sbjct: 280 GQKGSISVGQNVPFITGRVTGESANVNNPFQTVERQNVGISMSVFPVAMAGGNIVLDITS 339

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +         A D+ +   R   TTV L  G T++L GL          G+P LSKIP++
Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422
           G LF +   + EE+ +++     +V+ +
Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|330444063|ref|YP_004377049.1| type III secretion protein SctC [Chlamydophila pecorum E58]
 gi|328807173|gb|AEB41346.1| type III secretion protein SctC [Chlamydophila pecorum E58]
          Length = 908

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 124/326 (38%), Gaps = 53/326 (16%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235
           ++N L++    QV ++V I +   +     G Q    G+        S   S S  ++  
Sbjct: 573 LLNGLDLP-PKQVYIEVLILDTSLEKSWDFGVQWVALGNEQSKVAYASGLLSNSVISNTA 631

Query: 236 GKFVSEG----GDFSVK--------------------GVLDR---------FSFETVLHA 262
              V  G    G  S+                     G++            +   +L A
Sbjct: 632 KATVPPGVPTPGSLSLPTPAQMTGFSDMMSSSSAFGLGIIGNVISHKGKSFLTLGGLLSA 691

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYGVVLH 317
           L++      +  P + A   Q ASF  G    Y+T S+    TG+ +  +   D GV L 
Sbjct: 692 LDQDGDTIIVLNPRIMAQDTQQASFFVGQNIPYQTTSTIIQETGSVTQNIEYEDIGVNLV 751

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            T TV     + L+I+  +SE +        P      A T +++P G  +V++G ++D 
Sbjct: 752 VTSTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRMQVPDGCFLVMSGHIRDK 810

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             ++  G+PLL+ IP++  LF  +   R++  I +   P ++            + Y   
Sbjct: 811 TTKIVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGSDLTNKEGYRYN 870

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQ 463
            +A+A      +    P+ A E +  
Sbjct: 871 WEAEA-----GSMQVAPRPAPECQRP 891


>gi|149178109|ref|ZP_01856704.1| general secretion pathway protein D (Precursor) [Planctomyces maris
            DSM 8797]
 gi|148843029|gb|EDL57397.1| general secretion pathway protein D (Precursor) [Planctomyces maris
            DSM 8797]
          Length = 1307

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 145/427 (33%), Gaps = 42/427 (9%)

Query: 57   VIILQVPVDVQDVLVS-DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
             + +   +D Q  L++ DP          R + +  + +          +   +++    
Sbjct: 841  SVAINEFLDTQRALIAQDPDLISSFELLEREVIVVPEAI----------NNNLIISATPR 890

Query: 116  IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
                I++L   L +      I+       +++   +    +    + L ++ L       
Sbjct: 891  YFEQISNLVKQLDKEAPQVIIQA------LIVEVELDNDDEFGVELGLQDSLLFNRSIID 944

Query: 176  YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
               +  + +    N+   +Q  +     E     L           +++  + +  A   
Sbjct: 945  NVLTVQQTITGQNNVTQTNQTIVS---QEATPGFLFNSINPLGTNNTNNVSNTAGQALSN 1001

Query: 236  GKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                    D    G++      S   ++ AL     +  L+ P +  +   +A    G  
Sbjct: 1002 FSLQRGNSDLGFGGLVLSASSESVSILIRALAAKRNVHVLSRPQIRTVDNVTAQIQVGQI 1061

Query: 293  HLYKTVSSSTGATS----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------- 338
                   S T   S    +   + G++L  TP +   G I +  Q E S+          
Sbjct: 1062 VPVVNGVSVTAVGSANPVIQQSEAGIILTVTPRISPDGNIVMETQAEKSDFNGSSVPIFT 1121

Query: 339  PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 N  + P   + +  TTV +P+G T+VL G++ +    ++  +P L  IP++G  F
Sbjct: 1122 DATTGNVVESPIKNITQVQTTVSVPNGQTVVLGGMITESDTTIERKVPWLGDIPLIGIPF 1181

Query: 399  RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
            R    +    E+ +  TP +++  A  +  +      VE +       +  +++GP  A 
Sbjct: 1182 RYDYSSTRRKELLVFLTPRIIRNDADSEFIK-----QVESERIHLQVEKAEQMHGPIFAV 1236

Query: 459  EVEGQNY 465
                  +
Sbjct: 1237 PPGEPEF 1243


>gi|77458214|ref|YP_347719.1| type II and III secretion system protein [Pseudomonas fluorescens
           Pf0-1]
 gi|77382217|gb|ABA73730.1| putative general secretion pathway protein D [Pseudomonas
           fluorescens Pf0-1]
          Length = 615

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/427 (19%), Positives = 159/427 (37%), Gaps = 49/427 (11%)

Query: 53  GLNKVIILQVPVDVQ-DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           GLN +    +  D++  + V D    D V    +   L  K V +  +++     +++ +
Sbjct: 205 GLNFIFDKDLRPDMKATIFVRDVRIEDAVQLLLQQNQLHQKVVNENTLLIFPDSPQKLKD 264

Query: 112 LDILI-------ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
              L+         D       ++  +   ++ V+   +T+       T++D++ AV ++
Sbjct: 265 YQELVMRTFYLTSIDANTALNMIKTMLKTRDVFVDERLNTL-------TMRDTEDAVRMA 317

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           E  L    ++        +VM +                      +  +G Q   T    
Sbjct: 318 EKLLQSQDQSNPEVVLEVEVMEVAT------------------QRILDLGLQWPNTFGVV 359

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
               S         + +    +   +    S +  ++A  +   I TLA P +   + + 
Sbjct: 360 NSDGS-----AVTILDQLKGINSSRISISPSPQAKINA--QDNDINTLASPVIRVSNREQ 412

Query: 285 ASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           A    G +    + +S           SVT  D G+ L   PTV     + ++I  EVS 
Sbjct: 413 ARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPTVHLNNEVAIKIALEVSN 472

Query: 339 --PVIGVNAGDMPS-YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             P+     G +P     R A T++ L  G T +LAGL+++D       IP L  IP LG
Sbjct: 473 ATPLEPTRQGTIPVQVDTRNAQTSLRLHDGETQILAGLMRNDHGATGNKIPGLGDIPGLG 532

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
            LF +++    ++E+ ++ TP +V+ +  +  S  +     E        +R      P 
Sbjct: 533 RLFGSNKDTIGKSELVLSITPRIVRNLPYQSPSDMEFPTGTETSMHIQAPDRSQSYSMPA 592

Query: 456 EASEVEG 462
            A++   
Sbjct: 593 PAAQPRA 599


>gi|30249573|ref|NP_841643.1| general (type II) secretion pathway (GSP) D protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138936|emb|CAD85515.1| General (type II) secretion pathway (GSP) D protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 763

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 94/450 (20%), Positives = 158/450 (35%), Gaps = 66/450 (14%)

Query: 51  SIGLNKVIILQVPVDVQ-DVLVSDPTKADV------------VVHSPRTMYLF----GKN 93
           + G+N V    V  +    + V D +  DV             V +  T+ ++     K 
Sbjct: 206 TAGINFVFDRNVQQEATASIFVRDNSIEDVLKLMLLTNQLAYKVLNSNTLLIYPDTPAKQ 265

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
                     +    + +  +    D+  +   +R  +   +I V    +  V+      
Sbjct: 266 K--------DYQELVVRSFHVA-NTDVKQMVAMIRGLVKARDIYVNEKLNLFVIR----- 311

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D+   + L E  ++                  +N   + +V L V + EV+RD    +
Sbjct: 312 --DTLEMIRLVERLVA------------------INDFPDPEVMLDVVVLEVKRDSTLDL 351

Query: 214 GFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----ETVLHALERATA 268
           G     + + S  P     A      V +       G     SF    +  +      T 
Sbjct: 352 GPNMPTSVTFSAVPGIGTPAQAAADSVVKMSMIKNTGFEGLRSFTISNQARIDFGRTLTN 411

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSP 325
              LA P +   S + A    G +    TV+++     A S T  D G+     P V + 
Sbjct: 412 ADVLANPRIRVKSREKAKIHIGNKEPVFTVTNTANVGSAASATYIDVGLKFEVEPVVRTN 471

Query: 326 GRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
             + L+   EVS  +       G NA        R A+T +EL  G T VLAGL++DD+ 
Sbjct: 472 NEVTLKALLEVSSNLGEKRSGSGENAATAIVIGTRTAETVLELRDGETQVLAGLIQDDLS 531

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
           +++ GI  L+ IP+LG +F        +TEI +  TP +V+ V   +     + YS    
Sbjct: 532 RVRSGIAGLTDIPVLGDIFSKQVRKHNKTEIILLITPHIVRNVIQPN-HFESEFYSGTAS 590

Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
           A       + K      A E       G  
Sbjct: 591 AAGKLPVTIRKTAPRSLAMESSNSASDGGY 620


>gi|320355296|ref|YP_004196635.1| type II and III secretion system protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320123798|gb|ADW19344.1| type II and III secretion system protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 586

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 96/271 (35%), Gaps = 33/271 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
              +N L  +   QV ++  I EV      +IG   S        S +      G+    
Sbjct: 316 DDYINNLKKSLYKQVNIEAKIIEVYLQDNSKIGLDWSSVLKDFQISATTFFGNNGQVHPR 375

Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                      F  +  +   +F+  L+ALE       LA P LT ++GQ A  + G   
Sbjct: 376 TTADPDDFSNTFVSRVEIPSLTFDVFLNALEEQGDTHVLANPKLTVLNGQPAIISVGKDV 435

Query: 294 LYKTVSSSTGATSVTTHDY---------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
            Y    +    +      Y         G+ L    ++L   ++ L +    ++     +
Sbjct: 436 AYIKSVTREKDSDTEDITYSAEVGNVVQGIALGVMASILDENKVILHLTPITTDLANATS 495

Query: 345 AGDMPSYRV----------------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            G++P   +                R+  T VE+ +G  +++ GL+     +     P L
Sbjct: 496 DGEVPITTIGEGETAMSLGLPQVKVREMSTMVEVENGEMLIIGGLIDSIEGKTGAFAPGL 555

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
             IP++  LF       ++ E+ I  TP ++
Sbjct: 556 GSIPVVKYLFGVEEKTLQKRELVILLTPRII 586


>gi|313683362|ref|YP_004061100.1| type ii and iii secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
 gi|313156222|gb|ADR34900.1| type II and III secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
          Length = 494

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 104/265 (39%), Gaps = 29/265 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ ++ +  L      QV ++  + E+  +    IG   S        S +    +   +
Sbjct: 220 TNVEQYLAALKKRMHQQVMIEAHLIELTYNDYSSIGVNWS------NFSLALNGSYTNSY 273

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            + G    V      F+   ++  L++   +  L+ P +  +S Q A    G Q  Y   
Sbjct: 274 NNIGTAHPVYSFGIDFNPTGLIDFLKQYGDVEVLSNPKVLTLSNQPAIINVGKQLSYLYQ 333

Query: 299 SSSTGATSVT---------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM- 348
           + S   T+ T         +   G+ L+  P V   G I +RI    SE +         
Sbjct: 334 NGSIIGTTSTPTTVTNTLGSVFVGLTLNIIPEVSEDGYIIMRINPVSSELLSDSELSSSS 393

Query: 349 -------------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                        P  RV++  + V++     +++ GL++    + +  +PLL  IP+ G
Sbjct: 394 SQTSQTQTDRVMPPDTRVKQMSSIVKVKDSQKVLIGGLIEKKNYKNQTKVPLLGDIPLFG 453

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            LF NS     ++E+FI  TP LVK
Sbjct: 454 KLFHNSTDTIRKSELFILITPILVK 478


>gi|262064173|gb|ACY07155.1| IV [Enterobacteria phage f1]
          Length = 426

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 18/268 (6%)

Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           LS  G N    S+ K +++ L           DQ+ ++  I EV++     + F  +   
Sbjct: 164 LSIDGSNLLVVSTPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA--LDFSFAAGS 221

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                +     D     +S  G     G+ +       + AL+  +  + L+ P +  +S
Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279

Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           GQ  S + G    + T        + +    ++   + G+ +   P  ++ G I L I +
Sbjct: 280 GQKGSISVGRNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITS 339

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +         A D+ +   R   TTV L  G T++L GL          G+P LSKIP++
Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422
           G LF +   + EE+ +++     +V+ +
Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|74316567|ref|YP_314307.1| putative Type II secretory pathway component PulD [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056062|gb|AAZ96502.1| putative Type II secretory pathway component PulD [Thiobacillus
           denitrificans ATCC 25259]
          Length = 581

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 111/269 (41%), Gaps = 24/269 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ ++ +  + + QV ++ TI EV      + G   S     +          G   ++ 
Sbjct: 296 QQYLDRVMQSAQRQVLIEATIVEVTLKDQYRAGIDWSKALEGTTGWTINTLSGGSNALAN 355

Query: 242 GGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                ++          F   +  LE     + L+ P L A++ Q+A        +Y  V
Sbjct: 356 TLTPFIQATYTNAGSNGFTAAIDLLESFGKAKVLSSPKLMALNNQTALLKVVDNLVYFNV 415

Query: 299 SSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-- 345
            + T AT+             T   G+V+  TP +   G + L ++  +S  V  V    
Sbjct: 416 KADTTATANVGTTTTFTTTPQTVPVGIVMTMTPQINENGMVSLTVRPTISRNVGFVRDPN 475

Query: 346 --------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                     +P  +VR+ ++ +++ SG T++L GL++DD    ++GIP LS+   +GA+
Sbjct: 476 PSIPVAIPNQVPVIQVREMESLLQVRSGQTVILGGLIQDDSNNARDGIPGLSRPEGIGAV 535

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426
           F        +TE+ I   P +V   ++ D
Sbjct: 536 FGQHEQINSQTELVIFLRPIVVANPSLED 564


>gi|149197164|ref|ZP_01874216.1| secretion protein XqhA [Lentisphaera araneosa HTCC2155]
 gi|149139710|gb|EDM28111.1| secretion protein XqhA [Lentisphaera araneosa HTCC2155]
          Length = 738

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 17/247 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           A   QV ++VT  EV      + GF+++ T              G             G+
Sbjct: 466 APAMQVMIQVTAVEVELGEGLEFGFEYAATDKFGSGDNESGVGVGSSTADTPSFGPPGGL 525

Query: 251 LDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
               S              + A+   ++   L  P +  ++G+ A    G     +  ++
Sbjct: 526 DPGISLLLQSAGVDNEFAFVQAVAGDSSSELLFTPHILTLNGEEAEINIGQNVPVRAGTT 585

Query: 301 STGATS----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRV 353
           ST + +    +     GV+L   P V +   + L  +  +S  V         D PS+  
Sbjct: 586 STSSNNDFEQIEYRSTGVLLRVLPQVSADKYVTLDTEIVISSIVEQSPEEVLIDSPSFNE 645

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            K  T + + +  TI+L G+++    +   G+P L  IP +G LF+++     E E+ I 
Sbjct: 646 NKVTTKLLIKNNETILLGGIIQKVASESTSGVPFLKDIPGIGFLFQSATTGSREKELVIF 705

Query: 414 ATPFLVK 420
               +++
Sbjct: 706 IKATVIE 712


>gi|15834670|ref|NP_296429.1| type III secretion protein SctC [Chlamydia muridarum Nigg]
 gi|7190084|gb|AAF38934.1| type III secretion protein SctC [Chlamydia muridarum Nigg]
          Length = 672

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 54/333 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225
            ++  KV++LLN       QV ++V I E   +     G Q +  G   G          
Sbjct: 328 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 387

Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254
                      +   A + G   +   G  +              G++            
Sbjct: 388 NTGVVDPLRNQTPPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 447

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+      +   ++  
Sbjct: 448 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 507

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L  T T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 508 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 566

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D + ++  G+PLLS +P++  LF  +   R++  I I   P ++       +  
Sbjct: 567 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVISSFEEGTVLS 626

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
             + Y    +++     R +    P+ A E + 
Sbjct: 627 NSEGYRYNWESE-----RGSLEVAPRHAPECQN 654


>gi|298527693|ref|ZP_07015097.1| type II and III secretion system protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511345|gb|EFI35247.1| type II and III secretion system protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 553

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 105/270 (38%), Gaps = 31/270 (11%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           +   +  L      QV +   I EV      Q+G   S        + +++ + G +   
Sbjct: 282 ANNFIKQLKSKLSQQVVIDAQILEVSLSDSFQLGVDWSYISQELASNFAYSVNLGWQSAQ 341

Query: 241 EGGDFSV-------------KGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSA 285
             G + +              G +D     F   + ALE    +  ++ P + +   Q A
Sbjct: 342 GFGTYGLESEDPVPIVIDSRTGDVDEVYRQFSATIQALETFGQVSVVSNPHVRSRHLQPA 401

Query: 286 SFTSGG-QHLYKTVSSSTGATSVTTHDY---------GVVLHFTPTVLSPGRIGLRIQTE 335
             TSG  ++  + ++ S  AT     DY         GV+L   P +   G + L I   
Sbjct: 402 LVTSGTTRNFIQEITRSRRATDEDWVDYSVNTGTAFEGVMLGVVPFITDNGDVDLDIFPI 461

Query: 336 VSEPVIGVNA------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            S+  +   A        +P   VR  +T V +  G T++L GL++   ++ +   P  S
Sbjct: 462 TSQVDLSETAKIGGDQITLPKVNVRNVNTKVRVNDGDTVILGGLIQKGSRERERATPGAS 521

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
           +IP LG LF+    +++ +E+ +     +V
Sbjct: 522 RIPGLGWLFKQREDSQDLSELVVIMHVRVV 551


>gi|297181980|gb|ADI18156.1| type II secretory pathway, component puld [uncultured
           Verrucomicrobiales bacterium HF0200_39L05]
          Length = 800

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 105/309 (33%), Gaps = 66/309 (21%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI-------------TGSSSGPSKSFAADFGGKFVSE 241
           QV ++  I  V      ++G    +                + GPS + AA      V+ 
Sbjct: 437 QVLIEAIIVNVTLTDGMEMGVNAFMHEAAGPGDTRHIGGFMNGGPSTAGAAPSTPPTVNN 496

Query: 242 G--------------------GDFSVKGVLDRFS--------FETVLHALERATAIRTLA 273
           G                    G      +   FS         E  + AL  +++ + L 
Sbjct: 497 GAEQGGGDNVSNVAAAAGNALGSLGAGALSGGFSYISRYDNSLEFAMSALANSSSAKVLQ 556

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS----------------SSTGATSVTTHDYGVVLH 317
            P +       A+F +G Q  Y+  S                   G       + G+ L 
Sbjct: 557 TPRVQTSHAVPATFFNGEQVPYQGSSGYGGYGGGYGGYGGYGGYGGGGYTQFLNVGITLD 616

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSYRVRKADTTVELPSGGTI 368
            TP +     + + IQ  +SE    ++ G           P    R+A +TV +  G TI
Sbjct: 617 VTPYITPDDLVVMEIQQTISELDGFIDMGGGQQGSSGMKAPQTTEREAASTVSVRDGDTI 676

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +L G +++     + G+P L  IP+LG LF+N     + +E+ +   P ++K      L 
Sbjct: 677 LLGGFIRNSKTGTESGVPFLKDIPLLGNLFKNESNTNKRSELLVLIRPTILKSPEDAALI 736

Query: 429 RPDDHYSVE 437
              +   + 
Sbjct: 737 VSQERQRLP 745


>gi|197286852|ref|YP_002152724.1| hypothetical protein PMI3025 [Proteus mirabilis HI4320]
 gi|227354961|ref|ZP_03839372.1| competence protein E [Proteus mirabilis ATCC 29906]
 gi|194684339|emb|CAR45956.1| putative exported protein [Proteus mirabilis HI4320]
 gi|227164748|gb|EEI49595.1| competence protein E [Proteus mirabilis ATCC 29906]
          Length = 371

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 63/317 (19%), Positives = 113/317 (35%), Gaps = 30/317 (9%)

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
            R        V  V+  +  +G+       + A++     LS     +     S  +   
Sbjct: 60  HRIYPLQYADVTTVAQQLTNYGISLLSDHGRIAIDKDSNSLSIIDTEKAHTEISDWL--K 117

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAA--DFGGKFVSE 241
           +    + QV +   I    +D L ++G Q  +    S    G S +     +     ++ 
Sbjct: 118 IKETPQQQVHITAHIISSSQDALNELGTQWGLLNMKSANLEGTSNNTTTPHNIASAPLTA 177

Query: 242 GG-----------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                               F++  +  R     +    +       +A P LTA   ++
Sbjct: 178 PSLAALALHQKTKNPLHYIAFNIARINSRLLELELSALEQEKQLA-IIASPRLTAAHEKT 236

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           AS   G +  Y  VS       V   +  + +  TP +    +I L ++   + P I + 
Sbjct: 237 ASIKQGTEIPY--VSRDNDTIRVEFKEAVLGMEVTPIIQRSNKIRLLLKISQNTPGIALV 294

Query: 345 AGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            G     S   ++  T V +  G T++L G+ +   QQ    IP LS +P+LG LF + R
Sbjct: 295 QGGSEHLSIDKQEIMTEVTIHDGETLMLGGIFQQKQQQHAAKIPFLSSLPLLGILFSHKR 354

Query: 403 FNREETEIFIAATPFLV 419
                 E+ I  TP L+
Sbjct: 355 DQHSRHELVIFITPKLI 371


>gi|307297353|ref|ZP_07577159.1| type II and III secretion system protein [Thermotogales bacterium
            mesG1.Ag.4.2]
 gi|306916613|gb|EFN46995.1| type II and III secretion system protein [Thermotogales bacterium
            mesG1.Ag.4.2]
          Length = 3898

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 131/330 (39%), Gaps = 38/330 (11%)

Query: 104  HDGKQMLNLDIL--IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
              G++  +++++  +  ++  L   +  F     +  + V+  +V+ G+ ++        
Sbjct: 3595 KAGEEPTDVELVYRVYHNVEELTRLI-EFYGGEVLS-DPVNGYIVVRGLAKS--RVDNIF 3650

Query: 162  ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
            +   + LSQ                      + QV ++  + +       Q   + SI  
Sbjct: 3651 DEIGSALSQP---------------------KKQVRIETRLVDESLIDEIQREIKTSIGI 3689

Query: 222  SSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            ++      + S   DFG     +     +  +++  + +      +R      ++ P++ 
Sbjct: 3690 NAPEILIENGSVDLDFGIIDYLDITQL-IDDLVNTGTVKIEADLSDRDNDSDLISSPSIV 3748

Query: 279  AISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            ++SG+ A    G    Y   +      +     ++   + GV L  TPTV   G+I L +
Sbjct: 3749 SMSGEEAKIHIGDTIPYLVRTIEYVEGNPVEIETIEYLNTGVELRITPTVNDDGKILLDL 3808

Query: 333  QTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
              +VSEP   V+    +   + R+A++ + +  G T+ + GL+ +        +P LS +
Sbjct: 3809 FIKVSEPEKYVDGTRTLYGEKTREANSRLIISDGNTLTIGGLVANKDTVTVNKMPFLSDL 3868

Query: 392  PILGALFRNSRFNREETEIFIAATPFLVKP 421
            P +G LF       ++ E+ I  T  +V+P
Sbjct: 3869 PFIGKLFTTENKTSDKRELVIFITAEVVEP 3898


>gi|307823412|ref|ZP_07653641.1| type II and III secretion system protein [Methylobacter
           tundripaludum SV96]
 gi|307735397|gb|EFO06245.1| type II and III secretion system protein [Methylobacter
           tundripaludum SV96]
          Length = 554

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 91/255 (35%), Gaps = 17/255 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  ++        QV L+  I EV  D   Q G                    GG     
Sbjct: 273 ESFLSATQTQISRQVILEAKILEVTLDDNHQDGVNWESIVKEGINKAPLLTGIGGVMDPN 332

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--S 299
                         F   +  +E       L+ P ++ ++ QSA    G    + T    
Sbjct: 333 TFASVFTLGAHSGDFRAFVELMETQGKTNVLSSPRISTLNNQSAIIKVGQDEYFATGFNG 392

Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            + GAT V              G+ L  TP +     I L I   +S+         +  
Sbjct: 393 GTPGATGVAPTAPTVLIDVFFSGISLDVTPQIDDNEDITLHIHPSISQVKKDTKDFGLDI 452

Query: 351 ------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
                   VR++D+ V+  +G  IVL GL++++  + K+G+  L+ IP +G LFR +   
Sbjct: 453 TLPLALTTVRESDSIVKAKNGQIIVLGGLMQENDNEKKQGVTGLAAIPYIGNLFRVNTGT 512

Query: 405 REETEIFIAATPFLV 419
            +++E+ I      +
Sbjct: 513 TQKSELIILLKASFI 527


>gi|32266614|ref|NP_860646.1| hypothetical protein HH1115 [Helicobacter hepaticus ATCC 51449]
 gi|32262665|gb|AAP77712.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 533

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 103/268 (38%), Gaps = 20/268 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---ADFGGKF 238
           ++ +  LN   + QV + V I  V+    +  G   +            A       G  
Sbjct: 241 ERYIAQLNDKIQKQVLIDVHILNVQHTDNQTYGIDWNEFYKLGNIMTLPAEHQNTSSGSI 300

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
            S GG F++       +   ++  L+    +++++ P +  ++ Q A  + G    Y   
Sbjct: 301 DSSGGRFAINIFSQGVNINRIVEFLQTYGKVQSISNPKVLTLNNQPAIISVGSVLRYSQN 360

Query: 296 -------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT------EVSEPVIG 342
                  +  S    + +  +   G++L  TP++   G+I L+I        ++S     
Sbjct: 361 TTYQTTTQGTSVQNNSQAFPSVFAGILLDVTPSI-KDGKIILKINPSITKTKDISIENQT 419

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +     P+   ++  + V+L  G  IVL GL+     Q    IP+L  IP +   F   +
Sbjct: 420 IALNAPPNLSTKQLSSLVQLKDGEQIVLGGLIDKTEGQTTRKIPILGDIPFVKYFFSYKQ 479

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430
             +E  E+ I   P +V+  A    + P
Sbjct: 480 NIKETQEMVIIIAPHIVRLDANETAASP 507


>gi|26990190|ref|NP_745615.1| type II and III secretion system protein [Pseudomonas putida
           KT2440]
 gi|24985131|gb|AAN69079.1|AE016541_7 secretion protein, putative [Pseudomonas putida KT2440]
          Length = 621

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 140/376 (37%), Gaps = 39/376 (10%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            +   D +  +   I +      +E  +   +  + +R ++V+D  V+     + Q ++ 
Sbjct: 212 FIFDKDLRPDMKATIFVRE--VRIEDAIALLLEQNQLRQKIVNDNTVMV-YPDSPQKTKD 268

Query: 160 AVELSET--FLSQSGRNQYANSSSK-------KVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
             EL     +L+    N   N            V   LN       +  V +AE      
Sbjct: 269 YQELVMRTFYLTSIDANTALNMVKTMLKTRDVFVDERLNTLTMRDTSDAVRMAEKLLQSQ 328

Query: 211 KQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVLDRFSFE------ 257
            Q   +  +       + S   D G       G    +G   SV   L   +        
Sbjct: 329 DQSNPEVVLEVEVMEVATSRILDLGLQWPNTFGVLSDDGNPVSVLDQLKGINSSRISIAP 388

Query: 258 ---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT 308
                ++A  +   I TLA P +   + + A    G +    + +S           SVT
Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS-YRVRKADTTVELPSG 365
             D G+ L   PTV     + +++  EVS   P+     G +P     R A T++ L  G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T VLAGL+++D       IP L  IP LG LF +++ +  ++E+ +A TP +V+ +  +
Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLPYQ 566

Query: 426 DLSRPDDHYSVEDDAK 441
             S  +     E   +
Sbjct: 567 SPSDMEFSTGTESAMQ 582


>gi|269302489|gb|ACZ32589.1| type II/III secretion system protein [Chlamydophila pneumoniae
           LPCoLN]
          Length = 919

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 122/338 (36%), Gaps = 57/338 (16%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------SI 219
           NQ        ++N L++    QV ++V I +   +     G Q                +
Sbjct: 574 NQGNVDRVVSLLNGLDLP-PKQVYIEVLILDTSLEKSWDFGVQWVALGDEQSKVAYASGL 632

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------ 255
             ++   + + A    G            G L  FS                        
Sbjct: 633 LNNTGIATPTKATVPPGTPNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGNVLSHKGKS 692

Query: 256 ---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSV 307
                 +L AL++      +  P + A   Q ASF  G    Y+T ++      T   ++
Sbjct: 693 FLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQETGTVTQNI 752

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              D GV L  T TV     + L+I+  +SE +   +    P      A T +++P G  
Sbjct: 753 DYEDIGVNLVVTSTVAPNNVVTLQIEQTISE-LHSASGSLTPVTDKTYAATRLQIPDGCF 811

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA--MR 425
           +V++G ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++       R
Sbjct: 812 LVMSGHIRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTR 871

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
             ++    Y+ E D  +           P+ A E +G 
Sbjct: 872 VTNKEGYRYNWEADEGSM-------QVAPRHAPECQGP 902


>gi|94968501|ref|YP_590549.1| type II and III secretion system protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550551|gb|ABF40475.1| type II and III secretion system protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 808

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 101/273 (36%), Gaps = 33/273 (12%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----------SITGSSSGPSK 228
           S  ++++ L+     +V ++  +    R  ++++G Q            S   ++   S 
Sbjct: 536 SLDRLISQLD-RKTQEVEIEARVVAATRTFVRELGIQLGGGWGGASTSVSGNPNAGFGST 594

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFS---------------------FETVLHALERAT 267
           +F    G          S  G    F+                      +  L A E+  
Sbjct: 595 NFKNPAGQPITGAPFPISTTGAFPLFTNFQVLNPTAGLELINIGHSYGLDLYLSAAEQRG 654

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
            ++ L+ P +   +  +A    G +    T+S   G  +VT  D  + L  TP +     
Sbjct: 655 LLKILSRPRVVTQNNVTALVRQGFRLPVVTLSQLNGPPTVTYVDAFLRLTVTPQITVENT 714

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I L +  E + P         P    ++  T V +  GGT+ + G+++       + +P+
Sbjct: 715 IFLAVDVENTTPDFTRTVLGNPILLTQQTTTQVLVTDGGTVTIGGVVQTQNTLTSQEVPI 774

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L  IPIL  LF +   N +  E+    TP +V+
Sbjct: 775 LGDIPILKYLFMHKTTNTQTQELIFFITPKIVQ 807


>gi|167947465|ref|ZP_02534539.1| general secretion pathway protein D [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 241

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 94/239 (39%), Gaps = 30/239 (12%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVL---- 251
            ++  IAEV  D  K +G Q  + GS SG +      + G   +S+    +  GVL    
Sbjct: 2   LVEAIIAEVSFDKTKDLGVQWIVDGSPSGNTAPVGIINLGTPKISDIAGAAAAGVLPSIP 61

Query: 252 ---------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                              F  ++ ALE  ++   L+ P++  +  Q A         + 
Sbjct: 62  SGTLIGLGKFFXPPGSGVDFAMLIRALESDSSSNILSTPSILTLDNQEAEIVVAKNVPFL 121

Query: 297 TV---------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
           T          +S     ++   D G+ L  TP +     I L I+ EVS      +AG 
Sbjct: 122 TGQYASTGASSTSVNPFQTIQRQDVGLTLRVTPQINEGNAIQLSIEQEVSSIDPTTSAGT 181

Query: 348 M-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
                  R   T V +    TIVL GL+ + +QQ+ E +PLL  IP +G LFR     +
Sbjct: 182 TDIVTNKRTIKTVVMVEDSHTIVLGGLIDEQLQQVDERVPLLGDIPGVGVLFRARNNQQ 240


>gi|162417759|ref|YP_001604484.1| type III secretion outer membrane pore YscC [Yersinia pestis
           Angola]
 gi|294496845|ref|YP_003560542.1| type III secretion outer membrane pore YscC [Yersinia pestis
           Z176003]
 gi|162354779|gb|ABX88726.1| type III secretion outer membrane pore YscC [Yersinia pestis
           Angola]
 gi|294352433|gb|ADE66490.1| type III secretion outer membrane pore YscC [Yersinia pestis
           Z176003]
          Length = 612

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 123/334 (36%), Gaps = 16/334 (4%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVE 162
              + +   D  +      +   L+R ++D+ I+ V + +  +       + Q    A  
Sbjct: 199 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIPQAATRASAQAKVEADP 256

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
                + +    +      +++++ L+      + + ++I ++  D L ++G    + G 
Sbjct: 257 SLNAIIVRDSPERM--PMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 312

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279
            +G +        G   +   + ++  ++D    +     ++ LE   + + ++ PTL  
Sbjct: 313 RTGNNHQVVIKTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLT 372

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336
                A         Y    +      +    YG +L  TP VL+ G    I L +  E 
Sbjct: 373 QENAQAVID--HHETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIED 430

Query: 337 SEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                  +  D +P+      DT   +  G ++++ G+ +D++      +PLL  IP LG
Sbjct: 431 GNQKPNSSGIDGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLG 490

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ALFR        T       P ++       L+ 
Sbjct: 491 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 524


>gi|262284505|gb|ACY41042.1| VscC [Vibrio alginolyticus]
          Length = 624

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 118/320 (36%), Gaps = 25/320 (7%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----- 174
           +  +   L+R ++    +V   S   V         +   +V    T  ++ G N     
Sbjct: 213 VPGIASVLKRVVSGVQTQVTSASSKEVTSSDKPVKSNKTASVHGGATVEAEPGLNAIIVR 272

Query: 175 --QYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---S 227
             Q      +K++  L+   + Q  ++V  +I ++  + L Q+G       S        
Sbjct: 273 DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGVSVGNNRIVD 329

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284
                D     V+ G   + K +LD  +       +  LE   + + ++ PTL       
Sbjct: 330 IKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVE 389

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339
           A   +      K V   T A  +    YG +L   P ++         I L +  E    
Sbjct: 390 AVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPEINLSLHLEDGAK 447

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +      D+PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR
Sbjct: 448 IADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 507

Query: 400 NSRFNREETEIFIAATPFLV 419
           ++   +  T       P +V
Sbjct: 508 SNTNTKRRTVRMFILEPRIV 527


>gi|171910644|ref|ZP_02926114.1| type II/III secretion system protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 816

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 120/372 (32%), Gaps = 105/372 (28%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           D   AV ++ T        Q      +  +  L      Q+ +     EV +    ++GF
Sbjct: 411 DGSSAVFVAATSQLIVRNTQPNLDQVEAFVEGLTKQVPQQIYITTKFVEVSQKNTDELGF 470

Query: 216 QHSITGSSSG-----------------------PSKSFAADFGGKFVSEG---------- 242
              I G   G                       P        G   V+ G          
Sbjct: 471 DWLIGGFDIGGRAFGSGGTTGNSSNGPVSSSNYPFSQSGVPIGQNPVTAGLRSGTSAIAA 530

Query: 243 ------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                             G F++ GV     F+ V+ AL +   +  ++ P++T  SGQ 
Sbjct: 531 DSIDGLISGQSLVSSAAPGVFALAGVFTDPQFQVVIRALSQKKGVDLMSAPSVTTRSGQR 590

Query: 285 ASFTSGGQHLYKT-----------------------------VSSSTGATSVTTHDYGVV 315
           A+     + +Y T                               + T  T+      GV 
Sbjct: 591 ATVEVIREFIYPTEFDPPQIPQSVGATTTTGGVGLGSSTAAFPVTPTTPTAFEMRPVGVR 650

Query: 316 LHFTPTVLSPGR-IGLRIQTEVSE------------------------PVIGVNAGDMPS 350
           +   P +   G  I L +  EV+E                          +  N  + P 
Sbjct: 651 MEVDPVIGPDGYTIDLNLAPEVTEFEGFINYGSPINTASTDALGNPTTVTLTENRIEQPV 710

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  RK  T V +  G T+ + GL+++D+Q +++ +P+L  IPILG LF++   +  +  +
Sbjct: 711 FSTRKVTTAVTVWDGQTVAMGGLIREDVQDVEDKVPILGDIPILGRLFQSKAEDHFKRNL 770

Query: 411 FIAATPFLVKPV 422
            I  T  L+ P 
Sbjct: 771 MIFVTAKLIDPS 782


>gi|313143572|ref|ZP_07805765.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128603|gb|EFR46220.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 605

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 119/300 (39%), Gaps = 25/300 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGK 237
           +  +  LN   + QV + V I  ++    +  G   +           P  +  ++    
Sbjct: 250 ESYLATLNNKIQKQVLIDVYIFNIQHSNNQTYGIDWNEFYKLGNLLTLPPNAEGSNNALT 309

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
            V+  GDF++       S   ++  L+    +++++ P +  ++ Q A  + G    Y  
Sbjct: 310 GVNN-GDFAISIFSQGVSINRIVEFLQTYGKVQSVSNPKVLTLNNQPAIISVGSVLRYFQ 368

Query: 296 --------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT------EVSEPVI 341
                   +  S    + +  +   G++L  TP+V    +I L+I        ++S    
Sbjct: 369 NTTYQTTTQGTSIQNLSQTFPSVFAGILLDVTPSV-KNDKIILKINPSITKTKDISIENQ 427

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                  P+   ++  + V++  G  IVL GL+     Q+   +P+L  IP++  LF   
Sbjct: 428 TTALESPPNLSTKQLSSLVQVKDGEKIVLGGLIDKTEGQILRKLPILGDIPLIKYLFSYK 487

Query: 402 RFNREETEIFIAATPFLVKPVAM---RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           +  +E  E+ I  +P +V+  A    +D      +++ E D K        K   P++++
Sbjct: 488 KNIKETQEMVIIISPHIVRLDAREQEQDKIEEIINFTKESDLKPQDSKDTTKDSAPQDST 547


>gi|16082740|ref|NP_395186.1| outer membrane secretin precursor [Yersinia pestis CO92]
 gi|31795269|ref|NP_857730.1| outer membrane secretin precursor [Yersinia pestis KIM]
 gi|31795473|ref|NP_857925.1| outer membrane secretin precursor [Yersinia pestis KIM]
 gi|45478532|ref|NP_995359.1| putative type III secretion protein YscC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108793654|ref|YP_636804.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|145597132|ref|YP_001154596.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|149192687|ref|YP_001293919.1| Type III secretion outer membrane pore protein [Yersinia pestis
           CA88-4125]
 gi|165927821|ref|ZP_02223653.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165940102|ref|ZP_02228636.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011759|ref|ZP_02232657.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214450|ref|ZP_02240485.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401969|ref|ZP_02307455.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422893|ref|ZP_02314646.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426864|ref|ZP_02318617.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229896868|ref|ZP_04512028.1| Type III secretion outer membrane pore protein [Yersinia pestis
           Pestoides A]
 gi|229900223|ref|ZP_04515359.1| Type III secretion outer membrane pore protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|270491097|ref|ZP_06208169.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis KIM D27]
 gi|322836578|ref|YP_004210074.1| type III secretion outer membrane pore YscC [Yersinia pestis Java
           9]
 gi|155446|gb|AAA27638.1| KIM5 [Yersinia pestis]
 gi|2996229|gb|AAC62552.1| Yop proteins translocation protein C homolog [Yersinia pestis KIM
           10]
 gi|3822061|gb|AAC69781.1| type III secretion protein [Yersinia pestis KIM 10]
 gi|5832472|emb|CAB54929.1| putative type III secretion protein [Yersinia pestis CO92]
 gi|45357154|gb|AAS58550.1| putative type III secretion protein YscC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108782201|gb|ABG16256.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|145212900|gb|ABP42306.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|148872345|gb|ABR14835.1| Type III secretion outer membrane pore protein [Yersinia pestis
           CA88-4125]
 gi|165912012|gb|EDR30655.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920257|gb|EDR37558.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989366|gb|EDR41667.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204343|gb|EDR48823.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958183|gb|EDR55204.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048697|gb|EDR60105.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054163|gb|EDR63990.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229686743|gb|EEO78823.1| Type III secretion outer membrane pore protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229700139|gb|EEO88178.1| Type III secretion outer membrane pore protein [Yersinia pestis
           Pestoides A]
 gi|262364013|gb|ACY64350.1| outer membrane secretin precursor [Yersinia pestis D182038]
 gi|270334840|gb|EFA45619.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis KIM D27]
 gi|317374471|gb|ADV16646.1| type III secretion outermembrane pore forming protein [Yersinia
           pestis]
 gi|321161352|gb|ADW67058.1| type III secretion outer membrane pore YscC [Yersinia pestis Java
           9]
          Length = 607

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 123/334 (36%), Gaps = 16/334 (4%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVE 162
              + +   D  +      +   L+R ++D+ I+ V + +  +       + Q    A  
Sbjct: 194 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIPQAATRASAQAKVEADP 251

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
                + +    +      +++++ L+      + + ++I ++  D L ++G    + G 
Sbjct: 252 SLNAIIVRDSPERM--PMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 307

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279
            +G +        G   +   + ++  ++D    +     ++ LE   + + ++ PTL  
Sbjct: 308 RTGNNHQVVIKTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLT 367

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336
                A         Y    +      +    YG +L  TP VL+ G    I L +  E 
Sbjct: 368 QENAQAVID--HHETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIED 425

Query: 337 SEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                  +  D +P+      DT   +  G ++++ G+ +D++      +PLL  IP LG
Sbjct: 426 GNQKPNSSGIDGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLG 485

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ALFR        T       P ++       L+ 
Sbjct: 486 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 519


>gi|224437102|ref|ZP_03658083.1| hypothetical protein HcinC1_04000 [Helicobacter cinaedi CCUG 18818]
          Length = 602

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 119/300 (39%), Gaps = 25/300 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGK 237
           +  +  LN   + QV + V I  ++    +  G   +           P  +  ++    
Sbjct: 247 ESYLATLNNKIQKQVLIDVYIFNIQHSNNQTYGIDWNEFYKLGNLLTLPPNAEGSNNALT 306

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
            V+  GDF++       S   ++  L+    +++++ P +  ++ Q A  + G    Y  
Sbjct: 307 GVNN-GDFAISIFSQGVSINRIVEFLQTYGKVQSVSNPKVLTLNNQPAIISVGSVLRYFQ 365

Query: 296 --------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT------EVSEPVI 341
                   +  S    + +  +   G++L  TP+V    +I L+I        ++S    
Sbjct: 366 NTTYQTTTQGTSIQNLSQTFPSVFAGILLDVTPSV-KNDKIILKINPSITKTKDISIENQ 424

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                  P+   ++  + V++  G  IVL GL+     Q+   +P+L  IP++  LF   
Sbjct: 425 TTALESPPNLSTKQLSSLVQVKDGEKIVLGGLIDKTEGQILRKLPILGDIPLIKYLFSYK 484

Query: 402 RFNREETEIFIAATPFLVKPVAM---RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           +  +E  E+ I  +P +V+  A    +D      +++ E D K        K   P++++
Sbjct: 485 KNIKETQEMVIIISPHIVRLDAREQEQDKIEEIINFTKESDLKPQDSKDTTKDSAPQDST 544


>gi|312114563|ref|YP_004012159.1| type II and III secretion system protein [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219692|gb|ADP71060.1| type II and III secretion system protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 636

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 110/285 (38%), Gaps = 19/285 (6%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
            N     ++ L+V I E+ R   +Q+G  +  + +   P  SF     G  ++     + 
Sbjct: 334 TNDRKPAEIMLEVEILEIDRTKAEQLGLDYGSSITVQLPQVSFTDLANGAKLATNSVITF 393

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGAT 305
             V          + L+     RTL+ P +  + GQ A    G +   ++  V  +TG T
Sbjct: 394 PTV--------TFNYLKTDVGARTLSNPRIRTVDGQPAKIHVGDRVPLQSSFVQDTTGQT 445

Query: 306 SV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVE 361
                 HD G+ L   P     G I + ++ EVS     +     P+     R   TT+ 
Sbjct: 446 RTLFEYHDIGIQLDVIPKYHLDGSIFVDLKIEVSSLGSNLGTAAQPAYAIGSRNVHTTMI 505

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLL-SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L    T +L GL+K++ Q    G+P+  S + +L  LF  S      +E+ +  TP L++
Sbjct: 506 LRENETALLGGLIKEEEQHNMNGLPVERSGVSVLDRLFSTSSDKVGRSELLLTITPRLIR 565

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
           P +    S  D +       +  +  R    Y  K         Y
Sbjct: 566 PQSFAQRSATDFY----SGTEGTYSIRAEHEYLKKAPESGLAPRY 606


>gi|15618612|ref|NP_224898.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydophila pneumoniae CWL029]
 gi|15836234|ref|NP_300758.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138]
 gi|16752338|ref|NP_444596.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39]
 gi|33242060|ref|NP_877001.1| outer membrane secretion protein Q [Chlamydophila pneumoniae
           TW-183]
 gi|4377005|gb|AAD18841.1| probable Yop proteins translocation protein C/general secretion
           pathway protein [Chlamydophila pneumoniae CWL029]
 gi|6672030|dbj|BAA88652.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae]
 gi|7188983|gb|AAF37937.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39]
 gi|8979074|dbj|BAA98909.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138]
 gi|33236570|gb|AAP98658.1| outer membrane secretion protein Q [Chlamydophila pneumoniae
           TW-183]
          Length = 919

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 120/329 (36%), Gaps = 57/329 (17%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------SITGSSSGPSK 228
            ++N L++    QV ++V I +   +     G Q                +  ++   + 
Sbjct: 583 GLLNGLDLP-PKQVYIEVLILDTSLEKSWDFGVQWVALGDEQSKVAYASGLLNNTGIATP 641

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFS---------------------------FETVLH 261
           + A    G            G L  FS                              +L 
Sbjct: 642 TKATVPPGTPNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGNVLSHKGKSFLTLGGLLS 701

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVL 316
           AL++      +  P + A   Q ASF  G    Y+T ++      T   ++   D GV L
Sbjct: 702 ALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQETGTVTQNIDYEDIGVNL 761

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             T TV     + L+I+  +SE +   +    P      A T +++P G  +V++G ++D
Sbjct: 762 VVTSTVAPNNVVTLQIEQTISE-LHSASGSLTPVTDKTYAATRLQIPDGCFLVMSGHIRD 820

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHY 434
              ++  G+PLL+ IP++  LF  +   R++  I +   P ++       R  ++    Y
Sbjct: 821 KTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTRVTNKEGYRY 880

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
           + E D  +           P+ A E +G 
Sbjct: 881 NWEADEGSM-------QVAPRHAPECQGP 902


>gi|260770882|ref|ZP_05879811.1| type IV pilus biogenesis protein PilQ [Vibrio furnissii CIP 102972]
 gi|260614119|gb|EEX39309.1| type IV pilus biogenesis protein PilQ [Vibrio furnissii CIP 102972]
          Length = 574

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 33/269 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFV 239
           + ++  L+I    QV ++  I  V    L ++G +   S T  S+    S  ++ G   +
Sbjct: 306 RDIVASLDIP-VKQVQIEARIVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGL 364

Query: 240 SEGGD---------------------------FSVKGVLDRFSFETVLHALERATAIRTL 272
            +G                             F V  +      +  L A++R +    +
Sbjct: 365 YDGSSDSGDGAAIDDFLNVNLAATSANASSIAFQVAKLGADTLLDLELSAMQRESKAEII 424

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           + P L   + Q A    G +  Y   SSS+GATSV      + L  TP +    R+ L +
Sbjct: 425 SSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDL 483

Query: 333 QTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
                 P  V+    G+  +   ++  T V + +G T+VL G+ +  +    + +PLL  
Sbjct: 484 SVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGD 543

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           +P+LGALFR S     ++E+ I  TP +V
Sbjct: 544 LPLLGALFRRSYEQMGKSELLIFVTPKVV 572


>gi|281358092|ref|ZP_06244576.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315465|gb|EFA99494.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 545

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 98/255 (38%), Gaps = 11/255 (4%)

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG- 235
           A  + + +M  +++    Q+ ++  I EV      Q     S      G   +     G 
Sbjct: 144 AVENYRSIMLAMDVPSS-QILIEAKIVEVMFSDGMQRNLSISYAHKGRGSIGATTEVPGQ 202

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
               + G   + K +  + + +     L  A   + L+ P +     + +   +G +   
Sbjct: 203 SSQPTTGMGGNWKPIAGKDTLDIAFQWLLTAQDAKVLSSPNILISRNEVSRIVTGEEIPI 262

Query: 296 KTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------GVNAG 346
           +  +S+    S        GV L   P++++   + LR+  +VS  +        G  + 
Sbjct: 263 QEANSTGNTLSLSTKFKSVGVTLEVEPSMINRDNVTLRVYPKVSNVIRYENVSAGGDTSY 322

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P    R  +T + +     +++ GL   +    ++ +P+LS +P++G LF      +E
Sbjct: 323 PVPVISARSVETYLRMQDKQVVMMGGLYSRNDSLSQQRVPILSDLPLIGELFTGKNLTKE 382

Query: 407 ETEIFIAATPFLVKP 421
            T++       ++ P
Sbjct: 383 VTQLIFFLKIHIISP 397


>gi|51593921|ref|YP_068488.1| yscC; putative type III secretion protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|51591618|emb|CAF25422.1| yscC; putative type III secretion protein [Yersinia
           pseudotuberculosis IP 32953]
          Length = 607

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 123/334 (36%), Gaps = 16/334 (4%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVE 162
              + +   D  +      +   L+R ++D+ I+ V + +  +       + Q    A  
Sbjct: 194 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIPQAATRASAQAKVEADP 251

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
                + +    +      +++++ L+      + + ++I ++  D L ++G    + G 
Sbjct: 252 SLNAIIVRDSPERM--PMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 307

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279
            +G +        G   +   + ++  ++D    +     ++ LE   + + ++ PTL  
Sbjct: 308 RTGNNHQVVIKTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLT 367

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336
                A         Y    +      +    YG +L  TP VL+ G    I L +  E 
Sbjct: 368 QENAQAVID--HHETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIED 425

Query: 337 SEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                  +  D +P+      DT   +  G ++++ G+ +D++      +PLL  IP LG
Sbjct: 426 GNQKPNSSGIDGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLG 485

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ALFR        T       P ++       L+ 
Sbjct: 486 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 519


>gi|32471402|ref|NP_864395.1| protein transporter [Rhodopirellula baltica SH 1]
 gi|32443243|emb|CAD72074.1| conserved hypothetical protein-putative protein transporter
           [Rhodopirellula baltica SH 1]
          Length = 521

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 88/241 (36%), Gaps = 12/241 (4%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L+  I  V  D   Q G          G  +   +  G     E     +  +   
Sbjct: 272 PQVVLEAIICVVSPDSGFQFGLDWQHAVEMDGVKELSLSASGLALNGELSQAGLDAIFSD 331

Query: 254 F-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTH- 310
           F +    +  L     +   A P + A  G+ A+     +  +      STG  SV    
Sbjct: 332 FGNTSAFVRLLSEKGYLTIRATPHVMAKDGEQANIAINRETFFSVQPPGSTGNNSVFFQQ 391

Query: 311 -----DYGVVLHFTPTVLSP----GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
                D G++L  TP +             +  +V      ++    P    R   TTV 
Sbjct: 392 NIQKVDAGIMLDITPHIRGDEVTIDIEKAEVSEDVRNATPALSINQYPIINRRSVSTTVS 451

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G TIV+ GL++ +       IP LS++P +G LF+ ++    + E+ I  +P +V+ 
Sbjct: 452 VKDGKTIVIGGLVQRETVDRVNRIPGLSRLPGVGYLFQTTQRQTRDAEVVIFISPRIVRS 511

Query: 422 V 422
            
Sbjct: 512 T 512


>gi|218961675|ref|YP_001741450.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730332|emb|CAO81244.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
          Length = 472

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 32/259 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSKSFAADFGGK 237
             + Q+ ++V + EV  +  KQIG   S             +    +G   +++   G  
Sbjct: 188 TQQQQIEIRVRLIEVHLNEAKQIGVDWSKLNHLTTILAEDPVNQYGTGLPYNYSDATGYL 247

Query: 238 FVSEGGDFSVKGVLDRFS-----------------FETVLHALERATAIRTLAEPTLTAI 280
              +  DF V      F                  F+  +  L    A + L +  +TA+
Sbjct: 248 PHGDPTDFGVIPDEQYFQRINGFHDIGHFSRQLTAFDVTIDWLLENNAAQLLTDTRVTAL 307

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           +G+ A+   G    +  V+       V   + G++L+ TP V   G I + I  EVS   
Sbjct: 308 NGELATMHIGEVVPF-VVTDKENQLQVERSETGIILNVTPKVNKDGNITMNINPEVSSVT 366

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             V  G +P  +VR+  + V +P+   I++ GLL  +I Q    IPLL  +P++G +F++
Sbjct: 367 ELV-GGYIPRTKVRRVSSAVTVPNEHKIIVGGLLNSNITQKINKIPLLGDLPLIGKIFQH 425

Query: 401 SRFNREETEIFIAATPFLV 419
                E T++ I  TP LV
Sbjct: 426 RYELVENTDLIIEITPRLV 444


>gi|253998552|ref|YP_003050615.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
 gi|253985231|gb|ACT50088.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
          Length = 650

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 148/345 (42%), Gaps = 26/345 (7%)

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
            ++  +   ++ ++   +T+V+      I+ +++ +   +    +          +++ +
Sbjct: 293 MIKTVVKTKDVYIDEKLNTLVMRDTPEAIRTAEKLITSQDMAEPEVVLEVEVLEINRRSL 352

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
             + I     V++ V      RD         ++ G+++             F S+ G F
Sbjct: 353 EAIGIRYPSAVSVGVQ----GRD---------TVNGTTTLTPGELTVRELKNFNSDLGVF 399

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG- 303
           S+   +        L+ L++ T    LA P +   + + A    G +    T +++STG 
Sbjct: 400 SISDPV------LALNLLQQDTDTNLLANPRIRVKNREKAKIHVGDRIPVLTSIANSTGF 453

Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTT 359
            + SV+  + G+ L   PT+L    + +++  EVS     + +       +   R A+T 
Sbjct: 454 VSQSVSYIEVGIKLDVEPTILLNDDVSIKVGLEVSNQTDKITSSSGTVTYTIGTRNANTI 513

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L +G T VLAGLL+DD Q++   +P L+K+P++G LF +   +R + EI +  TP +V
Sbjct: 514 LRLKNGETQVLAGLLRDDEQKISNRVPGLAKLPLIGKLFTDRSTDRTKKEIALLITPRIV 573

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNR-VNKIYGPKEASEVEGQ 463
             +   +         V+ +  +    R VN+     +A  +  Q
Sbjct: 574 SNITPAEALYTAFPAGVDRNTGSNRNGRQVNESPAIAQAPLIPQQ 618


>gi|186897497|ref|YP_001874608.1| YscC/HrcC family type III secretion outer membrane protein
           [Yersinia pseudotuberculosis PB1/+]
 gi|186700523|gb|ACC91151.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 607

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 123/334 (36%), Gaps = 16/334 (4%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVE 162
              + +   D  +      +   L+R ++D+ I+ V + +  +       + Q    A  
Sbjct: 194 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIPQAATRASAQAKVEADP 251

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
                + +    +      +++++ L+      + + ++I ++  D L ++G    + G 
Sbjct: 252 SLNAIIVRDSPERM--PMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 307

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279
            +G +        G   +   + ++  ++D    +     ++ LE   + + ++ PTL  
Sbjct: 308 RTGNNHQVVIKTTGDKSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLT 367

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336
                A         Y    +      +    YG +L  TP VL+ G    I L +  E 
Sbjct: 368 QENAQAVID--HHETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIED 425

Query: 337 SEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                  +  D +P+      DT   +  G ++++ G+ +D++      +PLL  IP LG
Sbjct: 426 GNQKPNSSGIDGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLG 485

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ALFR        T       P ++       L+ 
Sbjct: 486 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 519


>gi|11991134|gb|AAG42220.1| unknown [Shewanella putrefaciens 200]
          Length = 258

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 7/172 (4%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309
            F  ++ A+   T    LA P +T +  Q ASF  G +    T S+++        +V  
Sbjct: 9   DFGALIQAVSSDTNSNVLATPXITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVER 68

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            + GV L   P +     + L I+ EVS   +  N G   S+  R+  TTV   SG  +V
Sbjct: 69  KEVGVKLKVVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVV 126

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L GL+ + +Q+  + +  L  IP+LG L       + +  + I   P +++ 
Sbjct: 127 LGGLINEXVQESVQKVLSLGDIPVLGHLSNLPPVXKTKKNLMIFIKPTIIRD 178


>gi|301166568|emb|CBW26144.1| putative general secretion pathway protein D [Bacteriovorax marinus
           SJ]
          Length = 765

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/338 (20%), Positives = 122/338 (36%), Gaps = 52/338 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVS 240
           K+V+  L+    DQV ++  I E      K  G       GS +     F  +    F  
Sbjct: 399 KEVIKKLDRP-RDQVFVEGMIMETSVTKDKGFGINIIGAYGSGATDKAGFVGNGTDLFNV 457

Query: 241 EGGDFSVKGVLDRF-------------------SFETVLHALERATAIRTLAEPTLTAIS 281
              + +  G L                      S   ++ A+        LA P + A+ 
Sbjct: 458 MSNNITALGGLFVGGGTGSSVTQTVSGQEVKIKSVSGLITAIASNAGTNVLATPQIMALD 517

Query: 282 GQSASFTSGGQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEV- 336
            + A F  G        ++    + + S+      + L  TP V    R I L+I  ++ 
Sbjct: 518 NEEAVFEVGESIPTPERTNAANGSSSVSIKQQKVAMTLKITPQVNKVTRFIKLKIDQKID 577

Query: 337 ---SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
              S  +      D  +   R A T+V +    TI + GL++D    +   +PLL  IP+
Sbjct: 578 DFSSRSLPSGVQSDGVATTTRSAVTSVVVRDRDTIAMGGLMRDKETDVTSKVPLLGDIPV 637

Query: 394 LGALFRNSRFNREETEIFIAATPFLV-----------------KPVAMRDLSRPDDHYSV 436
           LG LF+N+R + E+  +    TP ++                 +   +++     D +  
Sbjct: 638 LGWLFKNTRKSVEKLNLLFFLTPKIIDVYKTANAVNVQDQLNRRSTHLKNALGEKDPF-- 695

Query: 437 EDDAKAFFFNRVNKIYGP----KEASEVEGQNYKGAIG 470
              AK  +     +  GP    +EA E + +N +  IG
Sbjct: 696 ATTAKGLYEKAKKQEQGPLYDQEEADEYKRENEEQGIG 733


>gi|91224449|ref|ZP_01259711.1| putative type III secretion protein YscC [Vibrio alginolyticus
           12G01]
 gi|91190791|gb|EAS77058.1| putative type III secretion protein YscC [Vibrio alginolyticus
           12G01]
          Length = 624

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 112/320 (35%), Gaps = 25/320 (7%)

Query: 120 IAHLEMTLRRFIADSNIRVEMV-------SDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
           +  +   L+R ++    +V           D  V      ++                  
Sbjct: 213 VPGIASVLKRVVSGVQTQVASASSKEVTSPDKPVKSNKTASVHGGATVEAEPGLNAIIVR 272

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---S 227
             Q      +K++  L+   + Q  ++V  +I ++  + L Q+G       S        
Sbjct: 273 DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGVSVGNNRIVD 329

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284
                D     V+ G   + K +LD  +       +  LE   + + ++ PTL       
Sbjct: 330 IKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVE 389

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339
           A   +      K V   T A  +    YG +L   P ++         I L +  E    
Sbjct: 390 AVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPEINLSLHLEDGAK 447

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +      D+PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR
Sbjct: 448 IADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 507

Query: 400 NSRFNREETEIFIAATPFLV 419
           ++   +  T       P +V
Sbjct: 508 SNTNTKRRTVRMFILEPRIV 527


>gi|148547514|ref|YP_001267616.1| type II and III secretion system protein [Pseudomonas putida F1]
 gi|148511572|gb|ABQ78432.1| type II and III secretion system protein [Pseudomonas putida F1]
          Length = 621

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 140/376 (37%), Gaps = 39/376 (10%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            +   D +  +   I +      +E  +   +  + +R ++V+D  V+     + Q ++ 
Sbjct: 212 FIFDKDLRPDMKATIFVRE--VRIEDAIALLLEQNQLRQKIVNDNTVMV-YPDSPQKTKD 268

Query: 160 AVELSET--FLSQSGRNQYANSSSK-------KVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
             EL     +L+    N   N            V   LN       +  V +AE      
Sbjct: 269 YQELVMRTFYLTSIDANTALNMVKTMLKTRDVFVDERLNTLTMRDTSDAVRMAEKLLQSQ 328

Query: 211 KQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVLDRFSFE------ 257
            Q   +  +       + S   D G       G    +G   SV   L   S        
Sbjct: 329 DQSNPEVVLEVEVMEVATSRILDLGLQWPNTFGVLSDDGNPVSVLDQLKGISSSRISIAP 388

Query: 258 ---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT 308
                ++A  +   I TLA P +   + + A    G +    + +S           SVT
Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS-YRVRKADTTVELPSG 365
             D G+ L   PTV     + +++  EVS   P+     G +P     R A T++ L  G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T VLAGL+++D       IP L  IP LG LF +++ +  ++E+ +A TP +V+ +  +
Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLPYQ 566

Query: 426 DLSRPDDHYSVEDDAK 441
             S  +     E   +
Sbjct: 567 SPSDMEFSTGTESAMQ 582


>gi|269967259|ref|ZP_06181323.1| putative type III secretion protein YscC [Vibrio alginolyticus 40B]
 gi|269828115|gb|EEZ82385.1| putative type III secretion protein YscC [Vibrio alginolyticus 40B]
          Length = 624

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 112/320 (35%), Gaps = 25/320 (7%)

Query: 120 IAHLEMTLRRFIADSNIRVEMV-------SDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
           +  +   L+R ++    +V           D  V      ++                  
Sbjct: 213 VPGIASVLKRVVSGVQTQVASASSKEVTSPDKPVKSNKTASVHGGATVEAEPGLNAIIVR 272

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---S 227
             Q      +K++  L+   + Q  ++V  +I ++  + L Q+G       S        
Sbjct: 273 DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGVSVGNNRIVD 329

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284
                D     V+ G   + K +LD  +       +  LE   + + ++ PTL       
Sbjct: 330 IKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVE 389

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339
           A   +      K V   T A  +    YG +L   P ++         I L +  E    
Sbjct: 390 AVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPEINLSLHLEDGAK 447

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +      D+PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR
Sbjct: 448 IADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 507

Query: 400 NSRFNREETEIFIAATPFLV 419
           ++   +  T       P +V
Sbjct: 508 SNTNTKRRTVRMFILEPRIV 527


>gi|270157060|ref|ZP_06185717.1| type II secretory pathway protein LspD [Legionella longbeachae
           D-4968]
 gi|289164527|ref|YP_003454665.1| type II protein secretion LspD [Legionella longbeachae NSW150]
 gi|269989085|gb|EEZ95339.1| type II secretory pathway protein LspD [Legionella longbeachae
           D-4968]
 gi|288857700|emb|CBJ11543.1| type II protein secretion LspD [Legionella longbeachae NSW150]
          Length = 786

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 101/250 (40%), Gaps = 23/250 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K+V+  L+I    Q+ ++  +AE+ +D +  +G +      +  P               
Sbjct: 489 KRVIGQLDIK-PAQLLIEALVAEINQDDVNDLGIEWGSNQQTGKPGG-----------FR 536

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G   +        F+  ++AL RA     L+ P++  +  + A    G Q    + +  
Sbjct: 537 NGFAIINSKTQIADFQAQIYALARAHKANILSTPSVVVLDNRQAKILVGKQVSVASTNYP 596

Query: 302 TGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPS 350
             A         T+    +  + L+  P +     I ++I       +P     A   P+
Sbjct: 597 NNAGGTTPASPYTTFDRVNVALHLYVRPQITRGNGIQMQIDQGNDTLDPPATAEASVNPT 656

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +R+    T+V + SG  +VL GL +D +      +P+L  +P +G LF+ +   RE+  +
Sbjct: 657 FRISSIVTSVHVESGDIVVLGGLTQDRLDNDNNRLPVLGDLPGVGRLFKRNINTREKRVL 716

Query: 411 FIAATPFLVK 420
            +   P +++
Sbjct: 717 MVFIKPIILR 726


>gi|260654164|ref|ZP_05859654.1| putative bacterial type II/III secretion system short domain
           protein [Jonquetella anthropi E3_33 E1]
 gi|260631149|gb|EEX49343.1| putative bacterial type II/III secretion system short domain
           protein [Jonquetella anthropi E3_33 E1]
          Length = 531

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/428 (19%), Positives = 159/428 (37%), Gaps = 59/428 (13%)

Query: 19  SNPSVAKLPPIKEANAA-VINISDVEIGKGKKISI-GLNKVIILQVPVDVQDVLVSDPTK 76
             PS     P  +      +++++V++    +++  GL   II+  P     V +S    
Sbjct: 133 GAPSAGCAKPAGQKEKRLTMSLTEVKVADALRLAAEGLKCSIIVDEPETSPTVTLS---L 189

Query: 77  ADVVVHSPRTMYL----FG-KNVGQA------NVIL--IGHDGKQMLNLDI--LIERDIA 121
            DV       +      +G   +G        +V+   +G +G  + + D+         
Sbjct: 190 RDVTAQEALELITASAGYGWAKIGSTILVGPRSVLAARLGKNG--LKSYDVFWADPGKTG 247

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            L  ++   + D  + V+   + + + G     +  +  +   +                
Sbjct: 248 ALVKSIVGLVGDDAVSVDERRNRIYVKGTPAQQEQVRELLAQLDE--------------- 292

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRD-------ILKQIGFQHSITGSSSGPSKSFAADF 234
                       DQV +K  I EV  D       +L+ +  Q  ++ SS   S  F  D 
Sbjct: 293 ----------PADQVMIKARIIEVNDDATSEMESVLQAVYHQWWLSFSSGVASLGFF-DS 341

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                   G     G + R   +  +  L      R LA+PT+  + G  A+     +  
Sbjct: 342 SSPLAPSSGTAQGAGTVARM-LDARIAGLVEKGKARVLADPTVVVLDGHKATIKLVDRVK 400

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSY 351
           Y +     G    +  + G  L  TP V S G + + +  +  E V    G    D+P  
Sbjct: 401 YVSWRDDAGNPGYSDEEVGPRLEVTPRVGSEGGMTISMALKTGEIVQWKRGGLGEDVPQI 460

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+  ++V +  G   V+ GL K+ + +  + IP+L  +P+LG+LFR+SR     +++ 
Sbjct: 461 SEREVSSSVRVLDGQPFVVGGLFKESVSKTTQRIPVLGDLPLLGSLFRSSRRRSVRSQVV 520

Query: 412 IAATPFLV 419
           +   P L+
Sbjct: 521 MVVIPTLL 528


>gi|319786555|ref|YP_004146030.1| general secretion pathway protein D [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465067|gb|ADV26799.1| general secretion pathway protein D [Pseudoxanthomonas suwonensis
           11-1]
          Length = 711

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 108/283 (38%), Gaps = 44/283 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAADFGGKF 238
           ++V+  L++   +QV ++  + E+  D  +++G Q  + G           F     G  
Sbjct: 357 QEVIRQLDVR-REQVLVEALVVEISDDAARKLGTQLLLAGKDGTVPAGMTQFGNAGPGMA 415

Query: 239 VSEGGDFSVKGVLDRFS----------------------------------FETVLHALE 264
              GG  + +G                                        F  +++A+ 
Sbjct: 416 ALAGGVLASRGRGGDDDDDGAADAIREAAAQSLLGLSGGLLGIGGQSKDRLFGIIINAVR 475

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFT 319
                  L+ P++  +  + A    G +    T      +++    ++   D GV L   
Sbjct: 476 SDARSNVLSTPSILTLDNEEAHILVGEEVPVTTGEVLSNNNNNPFRTIDRQDVGVRLTVR 535

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P + S G I L I+ EVS     V+ + D      R+ +T V +  G  I L GLL    
Sbjct: 536 PQINSGGGITLAIRQEVSSVSGTVSRSSDELVLNKREIETNVVVDDGAMIALGGLLDHTS 595

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              ++ +PLL  IP+LGALFR++  +   T + +   P +++ 
Sbjct: 596 SDRRDKVPLLGDIPVLGALFRSTSRSSTRTNLMVFLRPTVIRD 638


>gi|313498582|gb|ADR59948.1| Type II and III secretion system protein [Pseudomonas putida
           BIRD-1]
          Length = 621

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 138/376 (36%), Gaps = 39/376 (10%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            +   D +  L   I +      +E  +   +  + +R ++V+D   L     + Q ++ 
Sbjct: 212 FIFDKDLRPDLKATIFVRE--VRIEDAIALLLEQNQLRQKIVNDN-TLMVYPDSPQKTKD 268

Query: 160 AVELSET--FLSQSGRNQYANSSSK-------KVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
             EL     +L+    N   N            V   LN          V +AE      
Sbjct: 269 YQELVMRTFYLTSIDANTALNMVKTMLKTRDVFVDERLNTLTMRDTPDAVRMAEKLLQSQ 328

Query: 211 KQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVLDRFSFE------ 257
            Q   +  +       + S   D G       G    +G   SV   L   +        
Sbjct: 329 DQSNPEVVLEVEVMEVATSRILDLGLQWPNTFGVLSDDGNPVSVLDQLKGINSSRISIAP 388

Query: 258 ---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT 308
                ++A  +   I TLA P +   + + A    G +    + +S           SVT
Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS-YRVRKADTTVELPSG 365
             D G+ L   PTV     + +++  EVS   P+     G +P     R A T++ L  G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T VLAGL+++D       IP L  IP LG LF +++ +  ++E+ +A TP +V+ +  +
Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLPYQ 566

Query: 426 DLSRPDDHYSVEDDAK 441
             S  +     E   +
Sbjct: 567 SPSDMEFSTGTESAMQ 582


>gi|257487974|ref|ZP_05642015.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 170

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 89/156 (57%), Gaps = 4/156 (2%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAG 346
           G  +   V  +     +    YGV L F+PT+L  GRI L+++ EVS       + VN  
Sbjct: 2   GGEVAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGY 61

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PILG LFR+ RF R 
Sbjct: 62  QVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRSKRFQRN 121

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           ETE+ I  TP+LV+PV  R ++ P D       A A
Sbjct: 122 ETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 157


>gi|301064238|ref|ZP_07204681.1| type IV pilus secretin PilQ [delta proteobacterium NaphS2]
 gi|300441683|gb|EFK06005.1| type IV pilus secretin PilQ [delta proteobacterium NaphS2]
          Length = 756

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 99/269 (36%), Gaps = 32/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-----------------S 224
           K+++  L++  E QV ++  I E   D  + +G Q      S                  
Sbjct: 489 KELVRKLDVP-EKQVMIETRIVEATTDFARDLGIQWQSLDGSRPGVQRKWYNSDGTERFD 547

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G   + A    G  +     +   G L   + +  L   +     + ++ P +  ++   
Sbjct: 548 GSFSTNAPANWGANIGLAFGWITDGGLGSLALDASLALAQDDGKAKIISAPKVMTVNNGP 607

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHD--YGVVLHFTPTVLSPG-RIGLRIQTEVSEPVI 341
           A    G    +   +      ++   +    + L  TPTV +    + ++++   +  + 
Sbjct: 608 AEVARGTVRYFPIRTLD----TIDYKEIPALLSLTVTPTVSADDQHVTMKVEVTDNRELP 663

Query: 342 GVN-------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                         P    +K  + + + +G T+V+ G+ +        GIP L  IP+L
Sbjct: 664 ASTEQTEEGTTDSPPGRTEKKITSNLIVKTGDTVVIGGIYQKSEISSDSGIPWLKDIPLL 723

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVA 423
           G LF+  R    +TE+ I  TP +VK V 
Sbjct: 724 GYLFKAERTQESKTELLIFLTPTVVKSVV 752


>gi|62184688|ref|YP_219473.1| putative general secretion protein [Chlamydophila abortus S26/3]
 gi|62147755|emb|CAH63499.1| putative general secretion protein [Chlamydophila abortus S26/3]
          Length = 908

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/332 (19%), Positives = 118/332 (35%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
            ++  KV++LLN       QV ++V I E   +     G Q    G   G     +    
Sbjct: 564 QTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLS 623

Query: 236 GKFVSEGGDFSVK--------------------------------GVLDR---------F 254
              ++     +V                                 G++            
Sbjct: 624 NTGLANPAKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFL 683

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+      T   ++  
Sbjct: 684 TLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEY 743

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L    T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 744 EDIGVNLVVASTIAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLV 802

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D   ++  G+PLL+ IP+L  LF  +   R++  I +   P ++          
Sbjct: 803 MSGHIRDKTTKIVTGVPLLNSIPLLRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTKLT 862

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +A     N  +    P+ A E +
Sbjct: 863 NKEGYRYNWEA-----NEGSMQVAPRHAPECQ 889


>gi|117926538|ref|YP_867155.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
 gi|117610294|gb|ABK45749.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
          Length = 830

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 125/330 (37%), Gaps = 47/330 (14%)

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L                 V   G+V   Q++   + +  T         Y  S  +    
Sbjct: 252 LPSAAPGGTASPAKAEPKVTSSGVVSINQETG-VISIFATAADHERIGSYLESLMEN--- 307

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-- 244
                   QV ++ T+ EV      Q G   + + +  G S+  A  F       GG   
Sbjct: 308 -----AHRQVLIESTVVEVTLSDDHQQGVDWA-SINDDGLSRLSAPFFANSIGVNGGSRP 361

Query: 245 --------FSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                   FS+   ++       + + AL +    + L+ P + A++ Q+A        +
Sbjct: 362 MALSDLPVFSLPTSINSGFGKITSTVRALAKFGNTKVLSSPKIMALNNQTAVLKVVDNTV 421

Query: 295 YKTVSSSTGA---------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           + TV +  G+               T V T   G+V+  TP + +   + L ++  +S  
Sbjct: 422 FFTVEAEAGSSANASGGTDTTALINTRVHTVPVGLVMSVTPQISADDVVTLNVRPTISSV 481

Query: 340 VIGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
              V+  +          +P  +V++ ++ + + SG   V+ GL++D I ++  G+PL+S
Sbjct: 482 SRWVSDPNPHLNAGVENLIPEIQVKEMESILRVHSGQITVMGGLMQDKISKVDTGLPLIS 541

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++P +G LF        +TE+ I   P ++
Sbjct: 542 QVPGIGGLFGYKEKTVSKTELVIFMRPVVM 571


>gi|315178926|gb|ADT85840.1| fimbrial assembly protein [Vibrio furnissii NCTC 11218]
          Length = 557

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 33/269 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFV 239
           + ++  L+I    QV ++  I  V    L ++G +   S T  S+    S  ++ G   +
Sbjct: 289 RDIVASLDIP-VKQVQIEARIVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGL 347

Query: 240 SEGGD---------------------------FSVKGVLDRFSFETVLHALERATAIRTL 272
            +G                             F V  +      +  L A++R +    +
Sbjct: 348 YDGSSDSGDGAAIDDFLNVNLAATSANASSIAFQVAKLGADTLLDLELSAMQRESKAEII 407

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           + P L   + Q A    G +  Y   SSS+GATSV      + L  TP +    R+ L +
Sbjct: 408 SSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDL 466

Query: 333 QTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
                 P  V+    G+  +   ++  T V + +G T+VL G+ +  +    + +PLL  
Sbjct: 467 SVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGD 526

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           +P+LGALFR S     ++E+ I  TP +V
Sbjct: 527 LPLLGALFRRSYEQMGKSELLIFVTPKVV 555


>gi|116626816|ref|YP_828972.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229978|gb|ABJ88687.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 752

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 97/250 (38%), Gaps = 17/250 (6%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            ++  L+IA   QV +   I EV  +     G    +    +GP   F+        + G
Sbjct: 480 GLLRQLDIA-PRQVLIDAKIYEVDLNGAFAAGVSAYLDKKDTGP---FSRTLNAATGAGG 535

Query: 243 GDFSVKG-VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              +    VL        L A E A+  + ++ P++ A     A+   G      T  + 
Sbjct: 536 LTLTTGALVLRSHELLAALTASETASHSKVISAPSIIATDSVPATLNVGDDVPVLTSQAV 595

Query: 302 TG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMP 349
            G            +V+    GV L     V S G + L +   VS P      +A   P
Sbjct: 596 AGGVQSSGSSVFTNTVSNRSTGVTLSIMARVNSSGIVTLIVNQNVSSPQPPPANSAIQSP 655

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           S+  R   T + +  G T+ + G++ +   Q   G+P L ++P +GA F    + +  TE
Sbjct: 656 SFSNRSFQTQLTVQDGDTVAIGGIILESNLQSSAGVPFLHRLPGIGAAFGAKSYTKSRTE 715

Query: 410 IFIAATPFLV 419
           + +  TP ++
Sbjct: 716 LVVFLTPRVI 725


>gi|15596579|ref|NP_250073.1| type II secretion system protein [Pseudomonas aeruginosa PAO1]
 gi|9947326|gb|AAG04771.1|AE004567_10 probable type II secretion system protein [Pseudomonas aeruginosa
           PAO1]
          Length = 759

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 103/254 (40%), Gaps = 23/254 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++VT+A V     +++G +  +   S   + S  +             +  G   
Sbjct: 488 ARQVLIEVTVASVSLSDTQELGVEWEMLNGSFNSATSTGSKGSAGKGGFNYVINTAG--- 544

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------ 306
                  + A+     +R LA P +   SG+ A+   G      T   +  +T+      
Sbjct: 545 --GNTAAIQAMADNQRVRVLATPRILVKSGEQANINVGRDIPIPTAQVNDDSTTAGSTNL 602

Query: 307 ---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYRVRK 355
              +     G +L+  P V S  R+ L +  E+S+       G          P      
Sbjct: 603 RNEIAYRSTGTILNVAPVVYSDSRVDLTVSQELSDSGGSSGGGGKASGGGISAPEISRTS 662

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            +T++ L SGG++++ GL++D+I     G+PLL  IP +G LF   +  +   E+ +   
Sbjct: 663 LETSLTLKSGGSVLMGGLIRDNITDSNAGVPLLKDIPGIGFLFGRQKAVKTREEVIMLIQ 722

Query: 416 PFLVK-PVAMRDLS 428
           P++++     R+++
Sbjct: 723 PYVLESDADAREVT 736


>gi|9630770|ref|NP_047372.1| putative maturation protein [Vibrio phage fs2]
 gi|3702216|dbj|BAA33484.1| unnamed protein product [Vibrio phage fs2]
          Length = 500

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 15/235 (6%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           +++ +++  + Q+ ++  I E       ++G         +G        F    V+   
Sbjct: 214 LLSAIDVP-QRQIFIEAVITETELGDNSELGVNLQAAFDKAG--------FVTNLVNASK 264

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                 + +   F  ++ A+  ++  R L+ P +  +  +    T G    +   +S+T 
Sbjct: 265 LKDNLFIFESGDFNALVKAISGSSDTRLLSRPNILIMDRERGYITVGQNVPFLVSNSTTD 324

Query: 304 ATS----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
             +    +   D GV L  TP V+    + L I  E S       A D+ +   R   TT
Sbjct: 325 GGTSVQRIERKDVGVSLEVTPHVMGDD-VILVINQESSSVTDSTIAADIIT-NKRTLMTT 382

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           V + SG TIVL GL+ D+ + ++ G+P+L   P++G LFR++     + E+ +  
Sbjct: 383 VAVKSGQTIVLGGLISDEKRNVESGVPVLKDTPLIGGLFRSTSTKNVQKELRVVI 437


>gi|310923243|emb|CBW54709.1| YscC, T3SS outer membrane ring component, local similarity to
           E.coli GspD (T2SS) and to iron transporters,PMID 9427408
           [Yersinia enterocolitica (type O:8)]
          Length = 607

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 122/334 (36%), Gaps = 16/334 (4%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVE 162
              + +   D  +      +   L+R ++D+ I+ V + +  +       + Q    A  
Sbjct: 194 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIPQAATRASAQARVEADP 251

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
                + +    +      +++++ L+      + + ++I ++  D L ++G    + G 
Sbjct: 252 SLNAIIVRDSPERM--PMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 307

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279
            +G +        G   +   + ++  ++D    +     ++ LE   + + ++ PTL  
Sbjct: 308 RTGNNHQVVIKTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLT 367

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336
                A       +  K            T  YG +L  TP VL+ G    I L +  E 
Sbjct: 368 QENAQAVIDHSETYYVKVTGKEVAELKGIT--YGTMLRMTPRVLTQGDKSEISLNLHIED 425

Query: 337 SEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                  +    +P+      DT   +  G ++++ G+ +D++      +PLL  IP LG
Sbjct: 426 GNQKPNSSGIEGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLG 485

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ALFR        T       P ++       L+ 
Sbjct: 486 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 519


>gi|329942358|ref|ZP_08291168.1| bacterial type II and III secretion system family protein
           [Chlamydophila psittaci Cal10]
 gi|332287000|ref|YP_004421901.1| bacterial type II/III secretion system protein [Chlamydophila
           psittaci 6BC]
 gi|325507136|gb|ADZ18774.1| bacterial type II/III secretion system protein [Chlamydophila
           psittaci 6BC]
 gi|328815268|gb|EGF85256.1| bacterial type II and III secretion system family protein
           [Chlamydophila psittaci Cal10]
 gi|328914230|gb|AEB55063.1| general secretion pathway protein D, putative [Chlamydophila
           psittaci 6BC]
          Length = 885

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 117/332 (35%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
            ++  KV++LLN       QV ++V I E   +     G Q    G   G     +    
Sbjct: 541 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLS 600

Query: 236 GKFVSEGGDFSVK--------------------------------GVLDR---------F 254
              ++     +V                                 G++            
Sbjct: 601 NTGLANPTKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFL 660

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+      T   ++  
Sbjct: 661 TLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEY 720

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L    TV     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 721 EDIGVNLVVASTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLV 779

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++          
Sbjct: 780 MSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTKLT 839

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +A        +    P+ A E +
Sbjct: 840 NKEGYRYNWEADE-----GSMQVAPRHAPECQ 866


>gi|262064162|gb|ACY07145.1| IV [Enterobacteria phage f1]
          Length = 426

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 108/268 (40%), Gaps = 18/268 (6%)

Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           LS  G N    S+ K +++ L           DQ+ ++  I E+++     + F  +   
Sbjct: 164 LSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEIQQGDA--LDFSFAAGS 221

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                +     D     +S  G     G+ +       + AL+  +  + L+ P +  +S
Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279

Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           GQ  S + G    + T        + +    ++   + G+ +   P  ++ G I L I +
Sbjct: 280 GQKGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITS 339

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +         A D+ +   R   TTV L  G T++L GL           +P LSKIP++
Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSDVPFLSKIPLI 398

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422
           G LF +   + EE+ +++     +V+ +
Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|89898772|ref|YP_515882.1| type III secretion general secretion pathway protein D
           [Chlamydophila felis Fe/C-56]
 gi|89332144|dbj|BAE81737.1| type III secretion general secretion pathway protein D
           [Chlamydophila felis Fe/C-56]
          Length = 908

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 117/332 (35%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
            ++  KV++LLN       QV ++V I E   +     G Q    G   G     +    
Sbjct: 564 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLS 623

Query: 236 GKFVSEGGDFSVK--------------------------------GVLDR---------F 254
              +S     ++                                 G++            
Sbjct: 624 NTGISNPTKSTIPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFL 683

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+      T   ++  
Sbjct: 684 TLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEY 743

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L    T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 744 EDIGVNLVVASTIAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLV 802

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++          
Sbjct: 803 MSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTTLT 862

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +A        +    P+ A E +
Sbjct: 863 NKEGYRYNWEADE-----GSMQVEPRHAPECQ 889


>gi|260772068|ref|ZP_05880985.1| type IV pilus biogenesis protein PilQ [Vibrio metschnikovii CIP
           69.14]
 gi|260612935|gb|EEX38137.1| type IV pilus biogenesis protein PilQ [Vibrio metschnikovii CIP
           69.14]
          Length = 573

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 109/266 (40%), Gaps = 30/266 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           +++++ L+I    QV ++  I  V    L ++G +  ++ +    +              
Sbjct: 308 REIISALDIP-VKQVQIEARIVTVNEGNLDELGIRWGVSSTRGNNTVGGSIEGNLTGIGL 366

Query: 230 -------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                           + G    +     F V  +      +  L A++R +    ++ P
Sbjct: 367 YQPEDGSEMINNFLNVNLGATAANASSIAFQVAKLGSGTLLDLELSAMQRESKAEIISSP 426

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L   + + A    G +  Y   SSS+GAT+V      + L  TP +    R+ L +   
Sbjct: 427 RLITTNKKPAYIEQGTEIPYLE-SSSSGATTVAFKKAVLSLQVTPQITPDNRLVLDLSVT 485

Query: 336 VSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
              P  ++    G+  +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+
Sbjct: 486 QDRPGDIVKTGTGEAVAIHTQRIGTQVLVNNGETVVLGGIFQHSITNTVDKVPLLGDLPL 545

Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
           LGALFR S     ++E+ I  TP +V
Sbjct: 546 LGALFRRSYQQMGKSELLIFVTPKVV 571


>gi|317050393|ref|YP_004111509.1| type II and III secretion system protein [Desulfurispirillum
           indicum S5]
 gi|316945477|gb|ADU64953.1| type II and III secretion system protein [Desulfurispirillum
           indicum S5]
          Length = 506

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 97/246 (39%), Gaps = 19/246 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LD 252
            QV ++  I EV  +    +G   +   S+           GG F   GGD +   V   
Sbjct: 260 KQVLIEAQIFEVVLNDSHSLGIDWTNAFSAGSGVGIIGQATGGSFGLPGGDMATGVVQYT 319

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSV 307
           R +F  +L  +  A  +  L+ P +  ++ Q+A  +SG    + T              +
Sbjct: 320 RNNFTGMLQVMRNAGNLEALSNPRIRVMNSQTAIISSGRITPFWTKRVDYSEVGGQINRI 379

Query: 308 TTHD-----YGVVLHFTPTVLSPGRIGLRI--------QTEVSEPVIGVNAGDMPSYRVR 354
            T+D      G+ +  TP +   G I L +        + +      G      P   ++
Sbjct: 380 ETYDRRDVLSGISMGVTPVIAPDGSILLTVIPVSTNFEEIDQQTDSSGDLIVSAPVVNMK 439

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +A T + +     +V+ GL+    ++  + +  LS IP+LG LFR SR  +E  E+ I  
Sbjct: 440 EAGTIIRVQDNDMVVIGGLISTSTRRETQEVSGLSAIPLLGHLFRGSRDVQERRELVIFL 499

Query: 415 TPFLVK 420
               V+
Sbjct: 500 RIRSVE 505


>gi|196232588|ref|ZP_03131440.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
 gi|196223350|gb|EDY17868.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
          Length = 880

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 131/380 (34%), Gaps = 110/380 (28%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +  A+ + ++        Q        +++     G  QV ++    E+++  LK++ F 
Sbjct: 477 NASAIYIVKSSRLIVRNTQDQLDLVDTIISSGGGQGPVQVEIESKFVEIQQTNLKELSFD 536

Query: 217 H-------------SITGSSSG----------PSKSFAADFGGKFVSEGG---------- 243
                          + G +SG          P  +     G   ++ G           
Sbjct: 537 WLLGQFNAPATKNVFLGGGTSGTAPALNPSDFPFVNGGVPVGNNPLTAGNRSGNLAISAN 596

Query: 244 ------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                               ++ GV     F+ V+ AL +   +  L+ P +T  SGQ A
Sbjct: 597 AIDALLFPISGSSQVAPAIGAISGVFTDPQFQLVIRALNQKKGVDLLSSPKVTTKSGQRA 656

Query: 286 SFTSGGQHLYKT-----------------------------VSSSTGATSVTTHDYGVVL 316
                 +  Y T                               + T  T+  T + GV L
Sbjct: 657 VIEIIREFRYPTEFTPPQIPQTFGNTGAGILGGGAATTGSFPVTPTTPTAFETRNTGVTL 716

Query: 317 HFTPTVLSPGR-IGLRIQTEV-------------------------SEPVIGVNAGDMPS 350
              P +   G  I L +  +V                         ++ VI  N  + P 
Sbjct: 717 EVEPVIGPDGYTIDLNLVPQVVEFEGFINYGSPITSSVTNPITGVSTQAVITPNVINQPI 776

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  RK  T+V +  G T+VL GL+++D+Q++++ +P++  IPI+G LFR+S     +  +
Sbjct: 777 FSTRKVTTSVSVYDGSTVVLGGLIREDVQKVEDKVPIIGDIPIVGRLFRSSVDQHIKRNL 836

Query: 411 FIAATPFLV----KPVAMRD 426
            I  T  L+    +PV   D
Sbjct: 837 IIFVTARLINAAGEPVRAED 856


>gi|313847597|emb|CBY16585.1| putative general secretion protein [Chlamydophila psittaci RD1]
          Length = 907

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 117/332 (35%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
            ++  KV++LLN       QV ++V I E   +     G Q    G   G     +    
Sbjct: 563 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLS 622

Query: 236 GKFVSEGGDFSVK--------------------------------GVLDR---------F 254
              ++     +V                                 G++            
Sbjct: 623 NTGLANPTKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFL 682

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+      T   ++  
Sbjct: 683 TLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEY 742

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L    TV     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 743 EDIGVNLVVASTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLV 801

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++          
Sbjct: 802 MSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTKLT 861

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +A        +    P+ A E +
Sbjct: 862 NKEGYRYNWEADE-----GSMQVAPRHAPECQ 888


>gi|171059300|ref|YP_001791649.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
 gi|170776745|gb|ACB34884.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
          Length = 662

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 141/395 (35%), Gaps = 22/395 (5%)

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD-GKQMLNLDILIERDIA 121
             +V+ V  +    A++ +   R +    +   +  + +        +  + +  + D  
Sbjct: 196 DANVKMVFEALSRTANINIILDRDV----RADLRTTIYVQNASVEDTLDLILLQNQLDRR 251

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            L          +  +    ++  V    +  I+ +Q A  + +T L        A S+S
Sbjct: 252 VLNGNTIFVYPATPAKQREYNELKVRTFQLSNIEAAQMAT-IIKTMLKTRDVVTDAKSNS 310

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
             + +        +  +         +++ ++      +   S     F   F     S 
Sbjct: 311 LVMRDTAASIAVAEKLIAANDVP-DPEVVLEVQVLEVSSDRLSNIGLRFPDAFTVGTPST 369

Query: 242 GGDFSVKGVLDRFSFETVLHALE-----RATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                    L   +      +L      + T    LA P + A + + A    G +    
Sbjct: 370 ATTVGDLRALTSDNLTASSLSLGLNLLLQDTDTNILASPRIRARNKEKARILVGDKVPVI 429

Query: 297 T--------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           T          SS    S+   D G+ L   P V + G +G+++  EVS     +     
Sbjct: 430 TNLITPQQSGQSSVITGSIQYVDVGIKLEVEPQVYADGDVGIKVNLEVSNIAKTITTSSG 489

Query: 349 PSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +Y+   R A T + L  G T ++AGL+ D  +     +P L ++P++G LF ++  +  
Sbjct: 490 VAYQIGTRNATTALRLHDGETQMMAGLINDQDRSTASKLPGLGQLPVIGRLFTSTNASGG 549

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           ++EI ++ TP +V+P +  +    +     E   +
Sbjct: 550 KSEIVLSITPRIVRPQSTPEARLGEVWSGTESSVR 584


>gi|269961466|ref|ZP_06175830.1| Fimbrial assembly protein PilQ [Vibrio harveyi 1DA3]
 gi|269833843|gb|EEZ87938.1| Fimbrial assembly protein PilQ [Vibrio harveyi 1DA3]
          Length = 563

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 109/274 (39%), Gaps = 38/274 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------- 221
           ++++  L+I    QV ++  I  +    + ++G +   T                     
Sbjct: 290 REIIESLDIP-VKQVQIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGL 348

Query: 222 -------------SSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERAT 267
                        SS G       +      +     F V  +      +  L AL++ +
Sbjct: 349 YDGGGDGEGDDGGSSVGIDDFLNVNLAATSPNATSLAFQVAKLGSDTLLDLELSALQQES 408

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               ++ P L   + + A    G +  Y   SSS+GATSVT     + L  TP +    R
Sbjct: 409 KAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNR 467

Query: 328 IGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           + L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  I    + +
Sbjct: 468 LVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKV 527

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 528 PLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 561


>gi|160872504|ref|ZP_02062636.1| putative fimbrial assembly protein PilQ [Rickettsiella grylli]
 gi|159121303|gb|EDP46641.1| putative fimbrial assembly protein PilQ [Rickettsiella grylli]
          Length = 442

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 102/252 (40%), Gaps = 27/252 (10%)

Query: 182 KKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHS------------------ITG 221
            ++++L+    +   Q+ ++  +  + ++  K++G Q +                  ++ 
Sbjct: 182 NRIIHLIKKLDKPIGQILIEARVVSIDQNKEKELGAQFNLSRMRPVNDLLKSTLRNEVSN 241

Query: 222 SSSGPSKSFAADF----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
            ++   +    D                 +  +      +  L ALE+  A   ++ P L
Sbjct: 242 QNTHLLQHLTMDLPLFSANSLGLASLGLRLLNLGKNSFLDLELSALEKEGAAEVISTPHL 301

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
                Q A   +G +  Y+  +S  G TS+      + L  TP ++   RI L ++    
Sbjct: 302 ITADQQPAFIEAGDEIPYQEKASG-GGTSLIFKKAVLSLKVTPQIMPQERIILDLEVNQD 360

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           +P       D P+ + R   T + + SG TIVL G+ +    +L++ +P L  +P++G L
Sbjct: 361 QP--NSVMVDAPTIKARGIKTQIIVKSGETIVLGGVYEYSQGKLEQRVPFLGSLPLIGRL 418

Query: 398 FRNSRFNREETE 409
           FR ++     +E
Sbjct: 419 FRLTKVYNRRSE 430


>gi|171060554|ref|YP_001792903.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
 gi|170777999|gb|ACB36138.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
          Length = 760

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 103/258 (39%), Gaps = 24/258 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            +V L++ I EV R  ++ +G  +        PS+       G  + E G+ + + +   
Sbjct: 328 PEVVLELEILEVSRTKVRDLGITY--------PSEFAGPGSSGAKLFEIGELNRRTI--G 377

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---------VSSSTGA 304
                 L  L      +TLA P +   + + A    G +    +          S++T  
Sbjct: 378 VDTGYKLKLLRTDGDTKTLANPRVRVRNREKARVHVGDRVPVISSTIVGTTNLGSNNTPV 437

Query: 305 TS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTT 359
           T+  +   D G+ +   PT+ +   + + I  +VS            +      R A T 
Sbjct: 438 TTEQIQYLDVGIKIEAEPTIYADDSVAISINLDVSSLGNQTRTNAGTTAYEVGTRNASTV 497

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T  L GL++DD  Q   G+P L + P+L  +F + R +R   E+ +  TP LV
Sbjct: 498 LRLRDGETQALMGLIRDDDVQTGAGLPYLGEFPVLDRIFGSKRTDRRSRELVLLITPQLV 557

Query: 420 KPVAMRDLSRPDDHYSVE 437
           + +   D +  +     E
Sbjct: 558 RGIEPADATLAEFWSGTE 575


>gi|163803103|ref|ZP_02196987.1| DNA-binding transcriptional regulator OxyR [Vibrio sp. AND4]
 gi|159173095|gb|EDP57927.1| DNA-binding transcriptional regulator OxyR [Vibrio sp. AND4]
          Length = 559

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 112/270 (41%), Gaps = 34/270 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFG---- 235
           ++++  L+I    QV ++  I  +    + ++G +  ++ + +G     S  ++      
Sbjct: 290 REIIQSLDIP-VKQVQIEARIVMINEGSMDELGVRWGLSSADAGYRLGGSIESNLATIGL 348

Query: 236 ------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                                    +  +    F V  +      +  L AL++ +    
Sbjct: 349 YDGGDGDDSSSVDIDDLLNVNLAVTRPNAASIAFQVAKLGSDTLLDLELSALQQESKAEI 408

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           ++ P L   + + A    G +  Y   SSS+GATSV      + L  TP +    R+ L 
Sbjct: 409 VSSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVTPQITPDNRLVLD 467

Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +      P  V+    G+  +   ++  T V + +G T+VL G+ +  I    + +PLL 
Sbjct: 468 LSVTQDRPGQVVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHSITNSVDKVPLLG 527

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            +P+LGALFR +  N  ++E+ I  TP +V
Sbjct: 528 DLPLLGALFRRTYENVGKSELLIFVTPKVV 557


>gi|28373014|ref|NP_783687.1| hypothetical protein pYVa12790_p34 [Yersinia enterocolitica]
 gi|32470300|ref|NP_863535.1| hypothetical protein pYVe8081_p30 [Yersinia enterocolitica]
 gi|122815824|ref|YP_001004090.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|14579358|gb|AAK69235.1|AF336309_30 YscC [Yersinia enterocolitica]
 gi|23630586|gb|AAN37542.1| YscC [Yersinia enterocolitica]
 gi|121663698|emb|CAL10060.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 607

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 125/334 (37%), Gaps = 16/334 (4%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
              + +   D  +      +   L+R ++D+ I+   V +  +    V T   +Q  VE 
Sbjct: 194 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIP--QVATRASAQARVEA 249

Query: 164 SETFLSQSGRNQYANSS-SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             +  +   R+        +++++ L+      + + ++I ++  D L ++G    + G 
Sbjct: 250 DPSLNAIIVRDSPERMPMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 307

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279
            +G +        G   +   + ++  ++D    +     ++ LE   + + ++ PTL  
Sbjct: 308 RTGNNHQVVIKTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLT 367

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336
                A       +  K            T  YG +L  TP VL+ G    I L +  E 
Sbjct: 368 QENAQAVIDHSETYYVKVTGKEVAELKGIT--YGTMLRMTPRVLTQGDKSEISLNLHIED 425

Query: 337 SEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                  +    +P+      DT   +  G ++++ G+ +D++      +PLL  IP LG
Sbjct: 426 GNQKPNSSGIEGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLG 485

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ALFR        T       P ++       L+ 
Sbjct: 486 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 519


>gi|302877484|ref|YP_003846048.1| type II and III secretion system protein [Gallionella
           capsiferriformans ES-2]
 gi|302580273|gb|ADL54284.1| type II and III secretion system protein [Gallionella
           capsiferriformans ES-2]
          Length = 573

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 116/349 (33%), Gaps = 63/349 (18%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL------NIAGEDQVT 197
            ++L G   +     R        +S         +   ++ N+        I+ E QV 
Sbjct: 222 RLILGGKDASDGKGARLPADRSLSVSPMSGVIVIRALPDEIRNVTAFLKASQISVERQVI 281

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------------- 242
           L+  I +V+ +   Q G       +      S      G  ++                 
Sbjct: 282 LEAKIIDVQLNDSFQSGVNWGAFKNGLNSFSSVGVGGAGSVLNPATAGVGATDISSAALS 341

Query: 243 ------------GDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                       G  S+ G+     SF  +L+ LE    +  L+ P ++ ++ Q A    
Sbjct: 342 ALPGASLLPNAAGTGSLFGLAFQTSSFALLLNFLESQGDVHVLSSPRISTLNNQKAVLKV 401

Query: 290 GGQHLYK---------TVSSSTGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSE 338
           G    +          TV+ +  A ++ T  +  G+VL  TP +     I L +   +S 
Sbjct: 402 GTDEFFVTEISGGSQATVNVAGTAPTIKTQPFFSGIVLDVTPKIDENNEIILHVHPSISS 461

Query: 339 PVI---------GVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
                             +P  S  + + D+ V    G  + + GL++ D    + G+P 
Sbjct: 462 VTTVNKVLNLGATTGTYTLPMASSSISETDSIVRARDGQIVAIGGLMRQDSTNGESGLPG 521

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKP--VAMRDLSRPDDHY 434
           LSK     ++F  +     + E+ I   P +V        D++R  D  
Sbjct: 522 LSK-----SIFGQTSKVSSKRELVILLKPTVVDSDRDWSDDIARSRDRV 565


>gi|29840703|ref|NP_829809.1| general secretion pathway protein D [Chlamydophila caviae GPIC]
 gi|29835053|gb|AAP05687.1| general secretion pathway protein D [Chlamydophila caviae GPIC]
          Length = 753

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 143/372 (38%), Gaps = 30/372 (8%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
              +A  E  L+     S I ++  S      G V+        +  S+T        + 
Sbjct: 392 GGSLASQESMLKEA--TSTIHIDTSSAGTAKEGSVK----YGNFIADSKTGTLIMVVEKE 445

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
           A    K ++  L++  +  V ++V + E +    ++ G      G       S    +  
Sbjct: 446 ALPRIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKAGLNLLRLGEEVCKKSSMGISWAS 504

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             + E       G      ++     L     +R  A P++  ++   A      +    
Sbjct: 505 SGILEFLFKGSTGASLVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEMSI- 563

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            VS+           YG+++   P +      G+  + ++T+++    G NA + P    
Sbjct: 564 AVSADKEKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNANERPDVTR 623

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V +P G T+++ GL    +   ++GIP L +IP +G LF  +  +  +TE+F+ 
Sbjct: 624 RNITNKVRIPDGETVIIGGLRCKHVSDSQDGIPFLGEIPGVGKLFGMNSTSDSQTEMFVF 683

Query: 414 ATPFLVK-PVAMRDL-------SRPDDH-------YSVEDDAKAFF--FNRVNKIYGPKE 456
            TP ++  P   ++        SRP ++       ++ E+ AKA       ++ I  P  
Sbjct: 684 ITPKILDNPAEKKERHEEAVLSSRPGENIEFRKALFAGEEAAKAAHKKLELISAIELP-- 741

Query: 457 ASEVEGQNYKGA 468
           AS+VEG  Y G 
Sbjct: 742 ASQVEGLEYDGR 753


>gi|193062144|ref|ZP_03043240.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli E22]
 gi|194426396|ref|ZP_03058951.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli B171]
 gi|260845704|ref|YP_003223482.1| T3SS structure protein EscC [Escherichia coli O103:H2 str. 12009]
 gi|260858255|ref|YP_003232146.1| T3SS structure protein EscC [Escherichia coli O26:H11 str. 11368]
 gi|13447709|gb|AAK26708.1|AF200363_16 EscC [Escherichia coli]
 gi|18034513|gb|AAL57535.1|AF453441_19 EscC [Escherichia coli]
 gi|17384643|emb|CAC81855.1| EscC protein [Escherichia coli]
 gi|57434464|emb|CAI43881.1| EscC protein [Escherichia coli]
 gi|192932364|gb|EDV84962.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli E22]
 gi|194415704|gb|EDX31971.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli B171]
 gi|195183205|dbj|BAG66750.1| T3SS structure protein EscC [Escherichia coli O111:H-]
 gi|254692333|emb|CAR47974.1| EscC protein [Escherichia coli]
 gi|254692401|emb|CAR48044.1| EscC protein [Escherichia coli]
 gi|257756904|dbj|BAI28406.1| T3SS structure protein EscC [Escherichia coli O26:H11 str. 11368]
 gi|257760851|dbj|BAI32348.1| T3SS structure protein EscC [Escherichia coli O103:H2 str. 12009]
 gi|323163017|gb|EFZ48850.1| hypothetical protein ECE128010_0613 [Escherichia coli E128010]
          Length = 512

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 113/262 (43%), Gaps = 29/262 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ L+I  + Q+ + V+I +V  + L+Q+G   S T ++   S +F +       + 
Sbjct: 263 RQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGSIAFNSS------TA 315

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             + S   + +  +F   ++AL++ +  + L++P++  ++   A         + T  S 
Sbjct: 316 QANLSSSVISNANNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346
               S+ +   G +L  TP +L      L                     ++      + 
Sbjct: 374 EKVASLESITSGTLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 433

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P  +  +  T   L +G +++L G ++D     K+GIPLLS IP++G LF ++   + 
Sbjct: 434 ILPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGNLFSSTTKQKH 493

Query: 407 ETEIFIAATPFLVKPVAMRDLS 428
                     FL+K   ++  S
Sbjct: 494 S-----VVRLFLIKATPIKSAS 510


>gi|167041767|gb|ABZ06510.1| putative bacterial type II and III secretion system protein
           [uncultured marine microorganism HF4000_010L19]
          Length = 536

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 110/301 (36%), Gaps = 22/301 (7%)

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
              +++  I VE  + ++++ G    +      +   +    Q     +   ++      
Sbjct: 249 ASTLSNIKITVEDTTRSIIVRGHKPDLDVIDAVLREIDIKTKQVLIEAFIVEATSDF--- 305

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---------F 238
                  Q  L   IA +++ +        S        + S A    G           
Sbjct: 306 -------QKRLGSRIAAMQKQVRGDDVVTISGITGGGNAATSAADVALGAAAGTLAANAI 358

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                   +   L   + +  + AL+       ++ P++  ++ Q A  T G +  Y+  
Sbjct: 359 TGGTSGIGILKQLGARALKLEIEALQSLGISNIISSPSVFTLNNQEAKITQGTEIAYQV- 417

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
            ++ G T+    +  + L  TP+V+  G I L IQ     P   V   D P+ +  +  T
Sbjct: 418 -TADGTTTTEFKEAALSLVVTPSVIGDGNILLDIQVNNDSPT-TVAGSDEPAIKTNEIKT 475

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + +  G  +V+ G+  +     K   P +SK+P++G LF+    + +  E+ I   P +
Sbjct: 476 KLLVSDGDIVVIGGIKINTATDTKTATPGMSKLPVVGNLFKGKAVSDKMDELLIFIAPRV 535

Query: 419 V 419
           +
Sbjct: 536 I 536


>gi|269964448|ref|ZP_06178689.1| Fimbrial assembly protein PilQ [Vibrio alginolyticus 40B]
 gi|269830786|gb|EEZ85004.1| Fimbrial assembly protein PilQ [Vibrio alginolyticus 40B]
          Length = 581

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 37/273 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  +    + ++G +   T  +   +              
Sbjct: 309 REIIESLDIP-VKQVQIEARIVTINEGNMDELGIRWGFTSINGSNTVGGSIENNLATIGL 367

Query: 230 --------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATA 268
                                  +      +     F V  +      +  L AL++ + 
Sbjct: 368 YNGEGGDDGGDGDGVGIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQESK 427

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
              ++ P L   + + A    G +  Y   SSS+GAT+VT     + L  TP +    R+
Sbjct: 428 AEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVTPQITPDNRL 486

Query: 329 GLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  I    + +P
Sbjct: 487 VLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVP 546

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           LL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 547 LLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 579


>gi|253995615|ref|YP_003047679.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera mobilis
           JLW8]
 gi|253982294|gb|ACT47152.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera mobilis
           JLW8]
          Length = 610

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 116/300 (38%), Gaps = 42/300 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------GPSKSF 230
           ++ ++ +  + + QV ++ TI EVR     Q G   S   +S+           G   + 
Sbjct: 299 QEFLDKVLASAKRQVLIEATIVEVRLSDSFQAGIDWSRLNNSASNSGFQFRQQLGAQTNG 358

Query: 231 AADFGGKFVSEGGDFSVKG-----------VLDRFSFETVLHALERATAIRTLAEPTLTA 279
               G  F +    F V             V    +    ++ LE+  + + L+ P L  
Sbjct: 359 INATGNTFTTTANAFGVATNAGFVAGYLNPVSKIGNIAASINLLEQFGSTKVLSSPKLMV 418

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSV------------TTHDYGVVLHFTPTVLSPGR 327
           ++ Q+A        +Y TV S     SV             T   GVV+  TP +     
Sbjct: 419 LNNQTAVLKVVDNLVYFTVQSQQSQGSVGGGILSTVTTTPNTVPVGVVMSVTPQINDLSN 478

Query: 328 IGLRIQTEVSE-------PVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           + + I+  VS        P   +     +P  +VR+ ++ +++ SG T VL GL++DD+ 
Sbjct: 479 VNINIRPTVSRVLGFKKDPNPNLTVESLVPEIQVREMESMLQILSGNTAVLGGLMQDDVL 538

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
              + +P LSK+P +G +F        +TE+ I   P ++   ++           +   
Sbjct: 539 TNTDKVPGLSKVPGVGKVFTGQNDANRKTELVIFLRPTVIVSASLESDELASYKQYLPSQ 598


>gi|148263986|ref|YP_001230692.1| type II and III secretion system protein [Geobacter uraniireducens
           Rf4]
 gi|146397486|gb|ABQ26119.1| type II and III secretion system protein [Geobacter uraniireducens
           Rf4]
          Length = 796

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 142/374 (37%), Gaps = 29/374 (7%)

Query: 80  VVHSPRTMYLFGKNVGQA----NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
            V +  T+ ++ KN  +      + +     +      +  ++ +  +   L+       
Sbjct: 244 KVLNENTIIIYTKNPEKTKQYEELFV-----QTFYLNKLEAKKAVNLIRTMLQVR----K 294

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           I V    + +V+      I+ +Q+ +E ++   ++          SK       +A    
Sbjct: 295 IYVNEEMNALVIRDTPDVIEVAQKILEANDLPDAEVVLEVEVIEISKNNAESFGLALSRY 354

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
                  AE     L  +     ++ + +  + +  ++    F   G +  +      F+
Sbjct: 355 AVSTAAAAEGSSTFLSDVLVP-PVSTTPTNTTNTPTSNLLNYFRWRGFNGFLTVPNATFN 413

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDY 312
           F   L          TLA P +   + + A F  G +    T SS TG   + +V   D 
Sbjct: 414 FGKTLS------NSETLANPKIRVKNREKAKFNVGQRVPITTTSSPTGGGVSVNVQYVDV 467

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRKADTTVELPSGG 366
           GV L+  PT+     + +++  EVS  +     G       + +   R  DT + L  G 
Sbjct: 468 GVKLNAEPTIQLNNEVSIKLSLEVSSILSKEKVGSTDSLTTVVTIGTRNLDTVLSLKDGE 527

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T ++ GL++D   + K+ I LL  IP++G L   +     ++E+ +A TP +V+ + + +
Sbjct: 528 TSIIGGLMQDLKSKNKQKIVLLGDIPLIGPLLSQNDDTNNKSELVLAITPRIVRSITIPE 587

Query: 427 LSRPDDHYSVEDDA 440
                     ED+ 
Sbjct: 588 GDVAAFWSGKEDEP 601


>gi|167033463|ref|YP_001668694.1| type II and III secretion system protein [Pseudomonas putida GB-1]
 gi|166859951|gb|ABY98358.1| type II and III secretion system protein [Pseudomonas putida GB-1]
          Length = 621

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 145/398 (36%), Gaps = 39/398 (9%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            +   D +  +   I +      +E  +   +  + +R ++V+D  V+     + Q ++ 
Sbjct: 212 FIFDKDLRPDMKATIFVRE--VRIEDAVALLLEQNQLRQKIVNDNTVMV-YPDSPQKTKD 268

Query: 160 AVELSET--FLSQSGRNQYANSSSK-------KVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
             EL     +L+    N   N            V   LN          V +AE      
Sbjct: 269 YQELVMRTFYLTSIDANTALNMVKTMLKTRDVFVDERLNTLTMRDTPDAVRMAEKLLQSQ 328

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG----------------VLDRF 254
            Q   +  +       + S   D G ++ +  G  S  G                +    
Sbjct: 329 DQSNPEVVLEVEVMEVATSRILDLGLQWPNTFGVLSNDGKPVSVLDQLKGIDSSRISISP 388

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT 308
           + +  ++A      I TLA P +   + + A    G +    + +S           SVT
Sbjct: 389 APQAKINA--SDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS-YRVRKADTTVELPSG 365
             D G+ L   PTV     + +++  EVS   P+     G +P     R A T++ L  G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T VLAGL+++D       IP L  IP LG LF +++ +  ++E+ +A TP +V+ +  +
Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLPYQ 566

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
             S  +     E   +      +  +  P  A   +  
Sbjct: 567 SPSDMEFSTGTESAMQVRQMAPLPPMDVPGNAPTTDAP 604


>gi|29839808|ref|NP_828914.1| type III secretion protein SctC [Chlamydophila caviae GPIC]
 gi|29834155|gb|AAP04792.1| type III secretion protein SctC [Chlamydophila caviae GPIC]
          Length = 909

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 116/334 (34%), Gaps = 54/334 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
            ++  KV++LLN       QV ++V I E   +     G Q    G   G     +    
Sbjct: 565 QTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLS 624

Query: 236 GKFVSE---------------------------------GGDFSVKGVLDRFS------- 255
              ++                                     F +  + +  S       
Sbjct: 625 NTGLANPAKATAPPLKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFL 684

Query: 256 -FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309
               +L AL++      +  P + A   Q ASF  G    ++T S+      T   ++  
Sbjct: 685 TLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEY 744

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L    T+     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 745 EDIGVNLVVASTIAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLV 803

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++          
Sbjct: 804 MSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTTLT 863

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
             + Y    +A        +    P+ A E +  
Sbjct: 864 NKEGYRYNWEADE-----GSMQVAPRHAPECQRP 892


>gi|156972409|ref|YP_001443316.1| type IV pilus secretin PilQ [Vibrio harveyi ATCC BAA-1116]
 gi|156524003|gb|ABU69089.1| hypothetical protein VIBHAR_00029 [Vibrio harveyi ATCC BAA-1116]
          Length = 583

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 109/274 (39%), Gaps = 38/274 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------- 221
           ++++  L+I    QV ++  I  +    + ++G +   T                     
Sbjct: 310 REIIESLDIP-VKQVQIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGL 368

Query: 222 -------------SSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERAT 267
                        SS G       +      +     F V  +      +  L AL++ +
Sbjct: 369 YDGGGDGEGDDGGSSVGIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQES 428

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               ++ P L   + + A    G +  Y   SSS+GATSVT     + L  TP +    R
Sbjct: 429 KAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNR 487

Query: 328 IGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           + L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  I    + +
Sbjct: 488 LVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKV 547

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 548 PLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 581


>gi|89897873|ref|YP_514983.1| general secretion pathway protein D [Chlamydophila felis Fe/C-56]
 gi|89331245|dbj|BAE80838.1| general secretion pathway protein D [Chlamydophila felis Fe/C-56]
          Length = 755

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 133/368 (36%), Gaps = 30/368 (8%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           +  E  LR   +  +I    V  T    G V+        +  S+T        + A   
Sbjct: 398 SSAESMLRDAASTIHIDTSSVGAT--KEGSVK----YGNFIADSKTGTLIMVVEKEALPR 451

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
            K ++  L++  +  V ++V + E +    +Q G      G       S A  +    + 
Sbjct: 452 IKMLLKKLDVP-KKMVRIEVLLFERKLSSQRQAGLNLLRLGEEVCKKTSSAVSWTSSGIL 510

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           E       G     S++     L     +R  A P++  ++   A      +     VS+
Sbjct: 511 EFLFKGSTGSSLVPSYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEMSI-AVSA 569

Query: 301 STGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                      YG+++   P +      G+  + ++T+++    G N  + P    R   
Sbjct: 570 DKEKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNTNERPDVTRRNIT 629

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             V +P G T+++ GL        ++GIP L +IP +G LF  +  +  +TE+F+  TP 
Sbjct: 630 NKVRIPDGETVIIGGLRCKHASDSQDGIPFLGEIPGIGKLFGMNSTSDSQTEMFVFITPK 689

Query: 418 LVK-PVAMRDLSRPDDHYSVEDDAKAFF----------------FNRVNKIYGPKEASEV 460
           ++  P   ++        S   +   F                    ++ I  P  AS+V
Sbjct: 690 ILDNPAEKKERQEEAILSSRPGENAEFRKALCAGEEAAKAAHKKLELISAIELP--ASQV 747

Query: 461 EGQNYKGA 468
           EG  Y G 
Sbjct: 748 EGLEYDGR 755


>gi|89902101|ref|YP_524572.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89346838|gb|ABD71041.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 614

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/384 (17%), Positives = 123/384 (32%), Gaps = 64/384 (16%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            +      +V  G  R++  S +A  ++   +    R         K +    IA E QV
Sbjct: 238 ELTEAVKGLVGAGPGRSVVISPQAGIMAVHAMPDELRQ------VDKFLKAAQIAVERQV 291

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-- 254
            L+  I EV      Q G   S   +  G + +     G    +   +  V+GV      
Sbjct: 292 MLEAKIVEVELRDGYQSGIDWSALKNGGGSTGAMGVIGGNTSATTSSNTLVRGVQSNLPG 351

Query: 255 -----------------------------SFETVLHALERATAIRTLAEPTLTAISGQSA 285
                                         F+ VL  LE    ++ L+ P +  ++ Q A
Sbjct: 352 FSAGSALLADGISLPAAGAGLFGLAFATDGFQAVLGFLETQGDVQILSSPRIATLNNQKA 411

Query: 286 SFTSGGQHLYKT---------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
               G +  + T                + +  + ++T    G+ L  TP +    +I L
Sbjct: 412 VLKVGAEDFFVTNVSGGTTSSVTTGSTATLTMPSITLTPFFSGISLDVTPQIDEGTKIML 471

Query: 331 RIQTEVSEPVIGVNAGDM----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            +   V+         D+           S  + + DT V +  G  + + GL++ +  +
Sbjct: 472 HVHPSVTTVSERAKQIDLGSAGNYVLPLASSSMNETDTLVRIQDGNIVAIGGLMQIESNR 531

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
              G+P  S +P+   LF N      + E+ +   P +++    +D            D 
Sbjct: 532 KSSGLPGTSDVPLFSTLFGNHANTGRKKEVVVLIKPTIIR--TAQDWEAQTRRTRAALDD 589

Query: 441 KAFFFNRVNKIYGPKEASEVEGQN 464
                 RV +I G  +        
Sbjct: 590 IDSVRARVIRIDGTVQEGAPRTPA 613


>gi|308094808|ref|ZP_05891872.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AN-5034]
 gi|308093421|gb|EFO43116.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AN-5034]
          Length = 628

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 114/319 (35%), Gaps = 19/319 (5%)

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMV-SDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           ++ R +  ++  +    +     V  + ++     G   ++                   
Sbjct: 218 VLSRVVGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRD 277

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---SK 228
            Q      +K++  L+   + Q  ++V  +I ++  + L+Q+G       S         
Sbjct: 278 TQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDI 334

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSA 285
               D     V+ G   S K +LD  +       +  LE   + + ++ PTL       A
Sbjct: 335 KTTGDVDNGDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEA 394

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPV 340
              +      K V   T A  +    YG +L   P ++         I L +  E    +
Sbjct: 395 VLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKI 452

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                 D+PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR+
Sbjct: 453 PDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRS 512

Query: 401 SRFNREETEIFIAATPFLV 419
           +      T       P +V
Sbjct: 513 NTNTTRRTVRMFIIEPRIV 531


>gi|308095101|ref|ZP_05903504.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus Peru-466]
 gi|308085930|gb|EFO35625.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus Peru-466]
          Length = 624

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 114/319 (35%), Gaps = 19/319 (5%)

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMV-SDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           ++ R +  ++  +    +     V  + ++     G   ++                   
Sbjct: 214 VLSRVVGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRD 273

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---SK 228
            Q      +K++  L+   + Q  ++V  +I ++  + L+Q+G       S         
Sbjct: 274 TQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDI 330

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSA 285
               D     V+ G   S K +LD  +       +  LE   + + ++ PTL       A
Sbjct: 331 KTTGDVDNGDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEA 390

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPV 340
              +      K V   T A  +    YG +L   P ++         I L +  E    +
Sbjct: 391 VLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKI 448

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                 D+PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR+
Sbjct: 449 PDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRS 508

Query: 401 SRFNREETEIFIAATPFLV 419
           +      T       P +V
Sbjct: 509 NTNTTRRTVRMFIIEPRIV 527


>gi|91227284|ref|ZP_01261709.1| fimbrial assembly protein [Vibrio alginolyticus 12G01]
 gi|91188678|gb|EAS74967.1| fimbrial assembly protein [Vibrio alginolyticus 12G01]
          Length = 560

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 37/273 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  +    + ++G +   T  +   +              
Sbjct: 288 REIIESLDIP-VKQVQIEARIVTINEGNMDELGIRWGFTSINGSNTVGGSIENNLATIGL 346

Query: 230 --------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATA 268
                                  +      +     F V  +      +  L AL++ + 
Sbjct: 347 YNGEGGDDGGDGDGVGIDDFLNVNLAATSPNATSLAFQVAKLGSDTLLDLELSALQQESK 406

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
              ++ P L   + + A    G +  Y   SSS+GAT+VT     + L  TP +    R+
Sbjct: 407 AEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVTPQITPDNRL 465

Query: 329 GLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  I    + +P
Sbjct: 466 VLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVP 525

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           LL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 526 LLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 558


>gi|10955572|ref|NP_052413.1| secretin YscC [Yersinia enterocolitica]
 gi|332163594|ref|YP_004424936.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|267564|sp|Q01244|YSCC_YEREN RecName: Full=Yop proteins translocation protein C; Flags:
           Precursor
 gi|155552|gb|AAC37020.1| yscC [Yersinia enterocolitica]
 gi|4324359|gb|AAD16836.1| secretin YscC [Yersinia enterocolitica W22703]
 gi|318608189|emb|CBY78163.1| type III secretion outermembrane pore forming protein
           (YscC,MxiD,HrcC, InvG) [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667824|gb|ADZ44467.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 607

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 122/334 (36%), Gaps = 16/334 (4%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVE 162
              + +   D  +      +   L+R ++D+ I+ V + +  +       + Q    A  
Sbjct: 194 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIPQAATRASAQARVEADP 251

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
                + +    +      +++++ L+      + + ++I ++  D L ++G    + G 
Sbjct: 252 SLNAIIVRDSPERM--PMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 307

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279
            +G +        G   +   + ++  ++D    +     ++ LE   + + ++ PTL  
Sbjct: 308 RTGNNHQVVIKTTGDQSNIASNGALGSLVDARGLDYLLARVNLLENEGSAQVVSRPTLLT 367

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336
                A       +  K            T  YG +L  TP VL+ G    I L +  E 
Sbjct: 368 QENAQAVIDHSETYYVKVTGKEVAELKGIT--YGTMLRMTPRVLTQGDKSEISLNLHIED 425

Query: 337 SEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                  +    +P+      DT   +  G ++++ G+ +D++      +PLL  IP +G
Sbjct: 426 GNQKPNSSGIEGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIG 485

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ALFR        T       P ++       L+ 
Sbjct: 486 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 519


>gi|153836207|ref|ZP_01988874.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AQ3810]
 gi|308126333|ref|ZP_05909374.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AQ4037]
 gi|149750482|gb|EDM61227.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AQ3810]
 gi|308110700|gb|EFO48240.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AQ4037]
          Length = 624

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 92/241 (38%), Gaps = 15/241 (6%)

Query: 192 GEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFS 246
            + Q  ++V  +I ++  + L+Q+G       S             D     V+ G   S
Sbjct: 289 DQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIIDIKTTGDVDNGDVTLGSGQS 348

Query: 247 VKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            K +LD  +       +  LE   + + ++ PTL       A   +      K V   T 
Sbjct: 349 FKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETA 408

Query: 304 ATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           A  +    YG +L   P ++         I L +  E    +      D+PS R  +  T
Sbjct: 409 A--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDLPSVRKTEIST 466

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +  G ++++ G+ +D++      +PLL  IP LGALFR++      T       P +
Sbjct: 467 LATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFIIEPRI 526

Query: 419 V 419
           V
Sbjct: 527 V 527


>gi|196233070|ref|ZP_03131918.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
 gi|196222877|gb|EDY17399.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
          Length = 874

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 103/264 (39%), Gaps = 21/264 (7%)

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
              S        +   + D        GG      V    S   ++ AL      R +  
Sbjct: 578 VDVSSGHGILNFNNLLSQDTIRSVAGVGGSGVTGFVTAGNSLTAIVTALMNTNRFRVVTR 637

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSS------------TGATSVTTHDYGVVLHFTPTV 322
           P++   + + A   SG +    T   S               +SV      + L   P +
Sbjct: 638 PSVFTRNNKKAIIASGQEIPVPTSIQSALNAGTTVNTGLVTQSSVQFKRVALQLEVVPLI 697

Query: 323 LSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            +   + L +  ++ +      ++  D+P+   R   T+V +P+ GT+VL GL++  + +
Sbjct: 698 NADREVSLDVLQKIDQVSGSTRIDNNDIPNIATRYVKTSVTVPNEGTVVLGGLIQQSMNK 757

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL--VKPVAMRDLSRPDDHYSVED 438
           ++ GIPLLS IP LG LF ++   +  TE+ I   P +    P A +   R  +  S++ 
Sbjct: 758 VRSGIPLLSSIPGLGYLFSSTTKEKIRTELVILIRPEVSWAPPEAAQIRERAQEVLSMDP 817

Query: 439 DAKAFFFNRVNKIYGPKEASEVEG 462
           D +A          G ++A   EG
Sbjct: 818 DLEASLSKN-----GVRKAEAPEG 836


>gi|308125791|ref|ZP_05777362.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus K5030]
 gi|308114494|gb|EFO52034.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus K5030]
          Length = 559

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 36/272 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  +    + ++G +   T  +   +              
Sbjct: 288 REIIESLDIP-VKQVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 346

Query: 230 -------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAI 269
                                 +      +     F V  +      +  L AL++ +  
Sbjct: 347 YEGGGDGEGEEGGVGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKA 406

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L   + + A    G +  Y   SSS+GATSVT     + L  TP +    R+ 
Sbjct: 407 EIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNRLV 465

Query: 330 LRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  I    + +PL
Sbjct: 466 LDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPL 525

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 526 LGDLPLLGALFRRSYENVGKSELLIFVTPKVV 557


>gi|46398274|gb|AAS91828.1| AscC [Aeromonas hydrophila]
          Length = 618

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 126/331 (38%), Gaps = 18/331 (5%)

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM-VRTIQDSQRAVELSE 165
           + +   D  +E     L   L R ++D+   V+MV+      G  V + Q   +A     
Sbjct: 205 RSIQYRDTDVEAP--GLATILARLLSDAG--VQMVNGEGNKKGAAVTSGQAIVQADPSLN 260

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
             + +    + A     K++  L+      + + ++I ++  + L Q+G    + G  +G
Sbjct: 261 AVIVRDTPERMAMYG--KLIAALDKPAAR-IEVALSIIDINAEDLSQLGVDWRV-GIRTG 316

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISG 282
            ++       G      G  ++  ++D    +     ++ LE     + ++ PTL     
Sbjct: 317 SNQQVIIKTTGDRKGIEGAAALGSLVDSKGLDYLLARVNLLENEGNAQVISRPTLLTQEN 376

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEV-SE 338
             A       +  K   S      +    YG +L  TP V+       I L +  E  S+
Sbjct: 377 TQAVIDHSETYYVKI--SGERVAELQGITYGTMLRMTPRVVQMWDKPEISLSLHIEDGSQ 434

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G  A  +P+ +    DT   +  G ++++ G+ +D++ +    +P L  IP LGALF
Sbjct: 435 KPNGTGADGLPTIQRTVVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALF 494

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           R+       +       P L+       LS 
Sbjct: 495 RSKDTQTRRSVRLFIIEPRLIDDGIAHYLSL 525


>gi|28898470|ref|NP_798075.1| putative type III secretion protein YscC [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28806688|dbj|BAC59959.1| putative type III secretion protein YscC [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 632

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 114/319 (35%), Gaps = 19/319 (5%)

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMV-SDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           ++ R +  ++  +    +     V  + ++     G   ++                   
Sbjct: 222 VLSRVVGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRD 281

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---SK 228
            Q      +K++  L+   + Q  ++V  +I ++  + L+Q+G       S         
Sbjct: 282 TQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDI 338

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSA 285
               D     V+ G   S K +LD  +       +  LE   + + ++ PTL       A
Sbjct: 339 KTTGDVDNGDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEA 398

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPV 340
              +      K V   T A  +    YG +L   P ++         I L +  E    +
Sbjct: 399 VLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKI 456

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                 D+PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR+
Sbjct: 457 PDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRS 516

Query: 401 SRFNREETEIFIAATPFLV 419
           +      T       P +V
Sbjct: 517 NTNTTRRTVRMFIIEPRIV 535


>gi|330813196|ref|YP_004357435.1| hypothetical protein SAR11G3_00221 [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486291|gb|AEA80696.1| hypothetical protein SAR11G3_00221 [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 518

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 104/265 (39%), Gaps = 32/265 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKS 229
            KV+  +++  + QV ++  I E      + +G +                G+SS  S +
Sbjct: 259 DKVIKEIDVRTK-QVLIEAFIVEADSTFEQALGTRLGGAYSAKKDYKIGGIGASSMASVT 317

Query: 230 FAADFGGKFVSEGG------DFSVKGVLDRFS---------FETVLHALERATAIRTLAE 274
             A  G    + GG      DF+  G                +  + ALE     +T++ 
Sbjct: 318 PPAGPGPSAAAIGGVTDALTDFAAVGATSGIGILRQTGSAVLKAEITALEVLGKGKTISN 377

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +  +  Q A+ T G +  Y+   S    TS    +  + L  TP+++  G + L I  
Sbjct: 378 PKVFTLDNQIATITQGEEISYQATGSEGADTS--FKEAALKLTVTPSIIGDGNVLLEI-- 433

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            V+   +       PS    +  T + +  G  +V+ G+ K+ +   K   P +  +P+L
Sbjct: 434 MVNNNTVNRANAGEPSINKMEISTKLLVADGDIVVIGGIKKNKVFSSKSQTPGVGNLPVL 493

Query: 395 GALFRNSRFNREETEIFIAATPFLV 419
           G LF+    + +  E+ I   P ++
Sbjct: 494 GNLFKGKSKSDKLDELLIFIAPRIL 518


>gi|328468919|gb|EGF39879.1| putative type III secretion protein YscC [Vibrio parahaemolyticus
           10329]
          Length = 628

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 17/242 (7%)

Query: 192 GEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSF----AADFGGKFVSEGGDF 245
            + Q  ++V  +I ++  + L+Q+G     TG S G ++        D     V+ G   
Sbjct: 293 DQPQSRIEVALSIVDISANDLRQLGVDWR-TGVSVGNNRIVDIKTTGDVDNGDVTLGSGQ 351

Query: 246 SVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           S K +LD  +       +  LE   + + ++ PTL       A   +      K V   T
Sbjct: 352 SFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKET 411

Query: 303 GATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            A  +    YG +L   P ++         I L +  E    +      D+PS R  +  
Sbjct: 412 AA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGTKIPDGGVDDLPSVRKTEIS 469

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T   +  G ++++ G+ +D++      +PLL  IP LGALFR++      T       P 
Sbjct: 470 TLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFIIEPR 529

Query: 418 LV 419
           +V
Sbjct: 530 IV 531


>gi|114330532|ref|YP_746754.1| type II and III secretion system protein [Nitrosomonas eutropha
           C91]
 gi|114307546|gb|ABI58789.1| type II and III secretion system protein [Nitrosomonas eutropha
           C91]
          Length = 767

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 88/407 (21%), Positives = 151/407 (37%), Gaps = 65/407 (15%)

Query: 51  SIGLNKVIILQVPVDVQ-DVLVSDPTKADV------------VVHSPRTMYLF----GKN 93
           + G+N V    V  +    + V D +  DV             V +  T+ ++     K 
Sbjct: 207 TAGINFVFDRNVQQEATASMFVRDNSIEDVLKLLLLTNQLAYKVLNSNTLLIYPDTPAKQ 266

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
                     +    + +  +    D+  +   +R  +   +I V    +  V+      
Sbjct: 267 K--------DYQELVVRSFHVA-NTDVKQMVAMIRGLVKARDIYVNEKLNLFVIR----- 312

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D+   + L E  ++                  +N   + +V L V + EV+RD   ++
Sbjct: 313 --DTLEMIRLVERLVA------------------INDFPDPEVMLDVVVLEVKRDNTLEL 352

Query: 214 GFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----ETVLHALERATA 268
           G     + + S  P     A      V +       G     SF    +  +      T 
Sbjct: 353 GPNMPTSVTFSAIPGVGAPAQAAADSVVKMSMIKNAGFEGLRSFTISNQAKIDFGRTLTN 412

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSP 325
              LA P +   S + A    G +    TV+++     A S T  D G+     P V + 
Sbjct: 413 ADVLANPRIRVKSREKAKIHIGNKEPVFTVTNTANVGSAASATYIDVGLKFEVEPVVRTN 472

Query: 326 GRIGLRIQTEVSEPVI------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
             + L+   EVS  +       G NA        R A+T +EL  G T VLAGL++DD+ 
Sbjct: 473 NEVTLKALLEVSSNLGEKRSGGGDNAATAIVIGTRTAETVLELRDGETQVLAGLIQDDLS 532

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++K GI  L++IPILG +F        +TEI +  TP +++ V   +
Sbjct: 533 RVKSGIAGLTEIPILGDIFSKQVRKHNKTEIILLITPHIIRNVVQPN 579


>gi|148979183|ref|ZP_01815362.1| fimbrial assembly protein [Vibrionales bacterium SWAT-3]
 gi|145961941|gb|EDK27231.1| fimbrial assembly protein [Vibrionales bacterium SWAT-3]
          Length = 564

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 111/267 (41%), Gaps = 31/267 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--------- 232
           + ++  L+I    QV ++  I  V      ++G +  ++ ++   +   +          
Sbjct: 298 RGIIESLDIP-VKQVQIEARIVTVTEGNFDELGVRWGVSSTNGSFTVGGSIEGNHPSAIT 356

Query: 233 ---DFGGKFV---------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
              D GG  V               +    F V  +      +  L AL++ +    ++ 
Sbjct: 357 PYDDDGGSSVIDDYLNVNLAATSPNASSIAFQVAKLGSDTLLDLELSALQQESKAEIISS 416

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L   + + A    G +  Y   SSS+GATSV      + L  TP +    R+ L +  
Sbjct: 417 PRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSV 475

Query: 335 EVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
               P  V+    G+  +   ++  T V + +G T+VL G+ +  +    + +PLL  +P
Sbjct: 476 TQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLP 535

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
           +LGALFR S  N  ++E+ I  TP +V
Sbjct: 536 LLGALFRRSYENVGKSELLIFVTPKVV 562


>gi|254229802|ref|ZP_04923209.1| type IV pilus secretin PilQ subfamily [Vibrio sp. Ex25]
 gi|262393099|ref|YP_003284953.1| type IV pilus biogenesis protein PilQ [Vibrio sp. Ex25]
 gi|151937701|gb|EDN56552.1| type IV pilus secretin PilQ subfamily [Vibrio sp. Ex25]
 gi|262336693|gb|ACY50488.1| type IV pilus biogenesis protein PilQ [Vibrio sp. Ex25]
          Length = 582

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 108/274 (39%), Gaps = 38/274 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  +    + ++G +   T  +   +              
Sbjct: 309 REIIESLDIP-VKQVQIEARIVTINEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 367

Query: 230 ---------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERAT 267
                                   +      +     F V  +      +  L AL++ +
Sbjct: 368 YNGGGEGEDGGDGDGVGIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQES 427

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               ++ P L   + + A    G +  Y   SSS+GAT+VT     + L  TP +    R
Sbjct: 428 KAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVTPQITPDNR 486

Query: 328 IGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           + L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  I    + +
Sbjct: 487 LVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKV 546

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 547 PLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 580


>gi|74317318|ref|YP_315058.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
           25259]
 gi|74056813|gb|AAZ97253.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
           25259]
          Length = 667

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
              IT  +    ++                   G++   S    + A         LA P
Sbjct: 346 DIGITPPTEATFRTLGPSGAPSTTLADLKGLNSGLIGVSSLSASVRARMDNGDTNLLANP 405

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIG 329
            +   + + A    G +    T + ++  T      +V   D G+     P +     + 
Sbjct: 406 RIRVKNREKAKVHIGERVPIITTTVTSAGTTSFLPETVNYLDVGIKFEVEPLISLNDEVT 465

Query: 330 LRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           +++  EVS   +  +  +  ++     R A TT+ L  G T  LAGL+ D+ ++   GIP
Sbjct: 466 IKVALEVSSLGQKSVTKSGSEVYRVGTRNASTTLALRDGETQALAGLISDEERETVNGIP 525

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
              +IP +G LF +   + ++TEI +  TP +V+ +    L+  D
Sbjct: 526 GFGRIPAIGRLFASKSNSTDKTEIVLLITPHIVRNLDRTALTASD 570


>gi|28899520|ref|NP_799125.1| fimbrial assembly protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28807756|dbj|BAC61009.1| fimbrial assembly protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 578

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 36/272 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  +    + ++G +   T  +   +              
Sbjct: 307 REIIESLDIP-VKQVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 365

Query: 230 -------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAI 269
                                 +      +     F V  +      +  L AL++ +  
Sbjct: 366 YEGGGDGEGEEGGVGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKA 425

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L   + + A    G +  Y   SSS+GATSVT     + L  TP +    R+ 
Sbjct: 426 EIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNRLV 484

Query: 330 LRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  I    + +PL
Sbjct: 485 LDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPL 544

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 545 LGDLPLLGALFRRSYENVGKSELLIFVTPKVV 576


>gi|284008887|emb|CBA75707.1| protein transport protein HofQ [Arsenophonus nasoniae]
          Length = 347

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 5/230 (2%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVL 251
           + QV +   I    R+ L ++G    ++            +      S     +     +
Sbjct: 118 QQQVQITAYIINTSREALYELGIFWELSSDKINQVGISRLNIHQPAPSSIPHIAFNIAKI 177

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                   L ALE+   +  +A P L A    SAS   G +  Y     S   + +   +
Sbjct: 178 KSHLLSLELSALEQENQLSIIASPRLMASHNHSASIKQGTEIPYII--QSKNKSQIKFKE 235

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369
             + +  TPT+L  G++ L ++   + P      N     +   ++  T V +  G T++
Sbjct: 236 AILGMEVTPTILRGGKVRLALKISQNTPNTSLLANTYQHIAINKQEISTQVTINHGETLI 295

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+ +      ++ IP L+ IP  G LF          E+ I  TP L+
Sbjct: 296 LGGIFQQKKNNQQQKIPYLADIPFFGQLFTKDGKQTYHRELVIFITPQLI 345


>gi|317407766|gb|EFV87693.1| hypothetical protein HMPREF0005_03214 [Achromobacter xylosoxidans
           C54]
          Length = 675

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 86/245 (35%), Gaps = 10/245 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVS 240
           ++++  L++     V ++  I +V  + + ++G    +  G SS      A    G    
Sbjct: 295 RQLIEQLDVPSTL-VEIEAMIVDVNSEAISELGVNWGVNVGRSSIGYGDLALKPSGGLPV 353

Query: 241 EGGDFSVKGVLD---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           +       G L      S    + AL+   A   L++P++       A            
Sbjct: 354 DSAAKLSPGTLGLSLGTSLAARVRALQSRGAANILSQPSILTADNLGAMIDLSETFYISL 413

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
                   +VT    G  L  TP  ++    G++ L +  E       V    +P+ R  
Sbjct: 414 RGERV--ATVTPVTVGTSLRVTPRYIAAAQGGQVELTVDIEDGSVQSEVEIDGLPTVRKS 471

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T   +    T+++ G       +  + +PLL  IP+LG LF +     +  E     
Sbjct: 472 NISTLAVVGDQQTLLIGGYNSSQNTEQVDKVPLLGDIPLLGTLFSSKSKTVQRRERLFLI 531

Query: 415 TPFLV 419
            P LV
Sbjct: 532 RPRLV 536


>gi|196230668|ref|ZP_03129529.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
 gi|196225009|gb|EDY19518.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
          Length = 864

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 140/411 (34%), Gaps = 120/411 (29%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +  A+ + ++        Q      ++++      G  QV ++    E+++  LK++GF 
Sbjct: 459 NASAIYIIKSSRLIVRNTQDQLDLVEQIVTSTGGQGPVQVEIESKFVEIQQTNLKELGFD 518

Query: 217 H-------------------------------------------SITGSSSGPSKSFAAD 233
                                                       SIT  +   +   +A+
Sbjct: 519 WLLGQFNLPSTYNAFAGGGTTGTAPALNPSDFPFVNGGVPVGQNSITAGNRSGNNGISAN 578

Query: 234 --------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                     G         +V GV     F+ V+ AL +   +  L+ P +T  SGQ A
Sbjct: 579 AIDALLFPINGSSQVAPAIAAVAGVFTDPQFQLVIRALNQKKGVDLLSSPKVTTKSGQRA 638

Query: 286 SFTSGGQHLYKT-------------------------------VSSSTGATSVTTHDYGV 314
                 +  Y T                                 + T  T+  T + GV
Sbjct: 639 VIEIIREFRYPTEFTPPQIPQTFGNTGGGILGGGGGSSSTGSFPVTPTTPTAFETRNTGV 698

Query: 315 VLHFTPTVLSPGR-IGLRIQTEV-------------------------SEPVIGVNAGDM 348
            L   P +   G  I L +  +V                         ++ VI  N  + 
Sbjct: 699 TLEVEPVIGPDGYTIDLNLVPQVVEFEGFINYGSPITSSVTNPITGTSTQAVITPNVINQ 758

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P +  RK  T+V +  G T+VL GL+++D+Q++++ +P++  +PI+G LFR+S     + 
Sbjct: 759 PIFSTRKVTTSVSVYDGSTVVLGGLIREDVQKVEDKVPIIGDVPIIGRLFRSSIDQHIKR 818

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
            + I  T  L+            +    ED+ +      ++K+  P+ A +
Sbjct: 819 NLIIFVTARLINAA--------GEPVRAEDEKEEV----IDKVPAPELAPQ 857


>gi|294055173|ref|YP_003548831.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614506|gb|ADE54661.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 709

 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 21/267 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K++++ ++I    QV ++V I EV     +  G        +  P  +     G   V  
Sbjct: 394 KELIDKIDIPLP-QVRIEVIITEVTLTENQASGLSSFAATFNDRPDITNLPVQGTGPVGL 452

Query: 242 GGD-FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           G D F++   +  F+   VL   E    ++ L+ P++     +            +T ++
Sbjct: 453 GLDNFNISSQIGDFAISAVLDLAEDDDNVKILSTPSIVVSHNEEGKINVSQSRPIETGTT 512

Query: 301 STGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-------------EPVIG 342
           +          +   D G+ L  TP + + G + + I+  V              E    
Sbjct: 513 TNTTSETVTNQIEYRDVGIQLTVTPLIGADGSVTMTIEQTVDTIFSESSTTNTGDEDGTT 572

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    P   VR+A++T+ +     I+L GL ++  +  +   P++ ++P++G L    +
Sbjct: 573 SSVDTNPVIGVREANSTITVNDREVIILGGLQENQREVSRTYFPIIGRMPLIGDLLSGKQ 632

Query: 403 FNREETEIFIAATPFLVK-PVAMRDLS 428
                TE+ I   P +++ P A  +L+
Sbjct: 633 IEYNRTELIIFVRPTILRNPQAATELT 659


>gi|212702669|ref|ZP_03310797.1| hypothetical protein DESPIG_00697 [Desulfovibrio piger ATCC 29098]
 gi|212673941|gb|EEB34424.1| hypothetical protein DESPIG_00697 [Desulfovibrio piger ATCC 29098]
          Length = 651

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 128/393 (32%), Gaps = 48/393 (12%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA--DSNIRVEMVSDTVVLHGMVRTIQDS 157
                D K       +    +A +   +        S + V+  +    L G      ++
Sbjct: 185 YAWAEDMKVNSMDSTVTIPGVASILQAMANGTPLTGSQVTVQPSAQGG-LRGKGLIAMNA 243

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVM-----NLLNIAGEDQ----------------- 195
                 +    SQ G++Q    S   ++     N + +   +                  
Sbjct: 244 STDTSQAAPAASQGGKDQSGTPSGPSIIADPRVNAVVVTDAEYRMSYYAKVIADLDKPVE 303

Query: 196 -VTLKVTIAEVRRDILKQIGFQHSITGSSS--------GPSKSFAADFGGKFVSEGGDFS 246
            V +   I ++  D  +  G   S TG+              S +  F     S  G  S
Sbjct: 304 LVEIHAAIVDIDSDFSRDFGVNWSGTGAYGKHWTGGGSAGGTSTSGIFPSAGASSAGGLS 363

Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
              +    S  F   + ALE     R L +P++  +    AS  +   +      S   +
Sbjct: 364 YSTLYSHGSDYFLARVTALEEDGQARVLGKPSVLTMDNVQASLENTSSYYVPV--SGNES 421

Query: 305 TSVTTHDYGVVLHFTPTVLSP-----GRIGLRIQTEVSEPV----IGVNAGDMPSYRVRK 355
           + +   D G VL  TP ++         I L +  +           V+  ++   +  K
Sbjct: 422 SDLFKIDSGTVLKVTPHIIPGLPGQADSIKLMVSVQDDRDDGSNLFSVDPNNLSPIKQTK 481

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            +T   +  G ++++ G   +     + GIP L  IPILG LF  +    +  E  I  T
Sbjct: 482 INTQAIVGEGQSLLIGGHYYEIQSDAETGIPGLKNIPILGGLFGATGKKHQRMERLILIT 541

Query: 416 PFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           P +V+   A    +R DD        +A +  R
Sbjct: 542 PRIVRMDTASNVPTRVDDPRFSRTPTQADYEER 574


>gi|299139665|ref|ZP_07032838.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298598289|gb|EFI54454.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 838

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 125/337 (37%), Gaps = 49/337 (14%)

Query: 117 ERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           + D   + + LR  +     I +    D +VL G                          
Sbjct: 300 QNDANEILIALRNMLDPAIKIYLVSTQDAIVLRGTPD----------------------- 336

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----QHSITGSSSGPSKSFA 231
                + K++N L+   + +V + V + EV +D  + +G       S+T  +S  + + A
Sbjct: 337 -ELMLAGKLINDLD-REKPEVVIDVAVMEVDKDKTRTLGITLPQSFSLTPQASSSNNNNA 394

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQ 283
           A+      S+         L   +            ++AL + T  R L  P L A  GQ
Sbjct: 395 ANNNSNSGSQSSSSFTLNTLANTNATNFAVTVTGGTVNALLQDTNTRILQNPRLRATDGQ 454

Query: 284 SASFTSGGQHLYKTVSSSTG---------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            A+   G +    + S S+           T  T  D G  +  TP V S G + L+++ 
Sbjct: 455 KATLKIGQRVPIASGSLSSPVGGVSSLGVQTQFTYVDVGTNMDITPAVHSDGSVSLKMKV 514

Query: 335 EVSEPVI--GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           EVS+      ++    P    +  + T++L  G   +LAGL+         G P L ++P
Sbjct: 515 EVSQVDTYDTISGVQEPVIGQKVLEQTIKLRDGEPSILAGLVTKQDSVAGSGTPGLGELP 574

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           +L  LF       +  EI     P +++   ++ L+ 
Sbjct: 575 VLKYLFGTQTKTLQNDEIVFLLVPHIIRETLLQKLNL 611


>gi|312883863|ref|ZP_07743580.1| hypothetical protein VIBC2010_01233 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368321|gb|EFP95856.1| hypothetical protein VIBC2010_01233 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 619

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 92/241 (38%), Gaps = 15/241 (6%)

Query: 192 GEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFS 246
            + Q  ++V  +I ++  + L Q+G       S         +   D     V  G   +
Sbjct: 284 DQPQSRIEVALSIVDISANNLSQLGVDWRAGVSVGNNKIVDINTTGDVTNGDVLLGSGQT 343

Query: 247 VKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
              +LD  +       ++ LE   + + ++ PTL       A  ++      K V   T 
Sbjct: 344 FNSLLDATNLNFLLAQINLLESQGSAQVVSRPTLLTQENVEAVLSNSTTFYVKLVGRETA 403

Query: 304 ATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           A    T  YG +L   P ++         I L +  E    +       +PS R  +  T
Sbjct: 404 ALDEVT--YGTLLRIVPRIVGDRFAERPEINLSLNLEDGAQIPDNVIDGVPSIRKTEIST 461

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +  G ++++ G+ +D+I Q    +PLL  IP LGALFR++      T       P +
Sbjct: 462 LATVKQGQSLLIGGVYRDEISQQLRKVPLLGDIPYLGALFRSTNDITRRTVRMFIIEPRI 521

Query: 419 V 419
           V
Sbjct: 522 V 522


>gi|326794354|ref|YP_004312174.1| type III secretion outer membrane pore, YscC/HrcC family
           [Marinomonas mediterranea MMB-1]
 gi|326545118|gb|ADZ90338.1| type III secretion outer membrane pore, YscC/HrcC family
           [Marinomonas mediterranea MMB-1]
          Length = 713

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 27/358 (7%)

Query: 79  VVVHSPRTMYLFGKN---VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
             +   R++    K+    G A+++  L+G   K  L +D     D      ++  F A 
Sbjct: 202 YALADDRSINYRNKSINIPGVASMLSNLLGGGKKAPLAID---TMDFKSPAQSMEAFSAM 258

Query: 134 SNIRVEMVSDTVVLHGMVRTI-----QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
               +  +++ +       +       D+ +           +      +   K++   L
Sbjct: 259 QENSISRINNRIADRYATPSEINAKLSDNSKVNSTISADTRNNAILIRDDYERKEMYEDL 318

Query: 189 NIAGEDQ----VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
            IA  DQ    + +   I ++ R+ L ++GF     G S              F+  G  
Sbjct: 319 -IAQLDQPRHVIEIDAIILDIDREKLSELGFNW--QGGSGNTEAKINTSGADPFLKSGSS 375

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            +V  + D   F   + ALE       +A P++  I  Q A          K  S+    
Sbjct: 376 ATVT-IQDFDHFFAQIRALETDGDASLVANPSILTIENQPAIIDFNNTAFIK--STGERV 432

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            +V+    G  L   P ++       I L +  E    +   +  D PS       T   
Sbjct: 433 ANVSEITAGTSLQVLPRLIDSEAERVIQLFLDIE-DGDIESNSGADTPSVSKGSISTQAV 491

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +  ++V+ G   +   Q +  +PLL  +P +G LF  +     + E     TP LV
Sbjct: 492 IKTERSLVIGGFKVEQNTQRESKVPLLGDLPGIGKLFSYTSKAHSKRERLFIITPRLV 549


>gi|308126655|ref|ZP_05911606.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AQ4037]
 gi|308108444|gb|EFO45984.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AQ4037]
          Length = 582

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 108/274 (39%), Gaps = 38/274 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  +    + ++G +   T  +   +              
Sbjct: 309 REIIESLDIP-VKQVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 367

Query: 230 ---------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERAT 267
                                   +      +     F V  +      +  L AL++ +
Sbjct: 368 YEGGGDGEGEEGGDGVGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQES 427

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               ++ P L   + + A    G +  Y   SSS+GATSVT     + L  TP +    R
Sbjct: 428 KAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNR 486

Query: 328 IGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           + L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  I    + +
Sbjct: 487 LVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKV 546

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 547 PLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 580


>gi|54124974|gb|AAV30242.1| YscC [Aeromonas hydrophila]
          Length = 614

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 113/319 (35%), Gaps = 17/319 (5%)

Query: 119 DIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
           D   +   L R ++D+ ++ V       V  G        Q    L+   +  +      
Sbjct: 215 DAPGVATILSRLLSDAGVQMVNGEGAKGV--GTNSGQAIVQADPSLNAVLVRDAPERMAM 272

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                K++  L+      + + ++I ++  + L Q+G    + G  +G ++       G 
Sbjct: 273 YG---KLIAALDKPAAR-IEVALSIIDINAEDLSQLGVDWRV-GIRTGSNQQVIIKTTGD 327

Query: 238 FVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                G  ++  ++D    +     ++ LE     + ++ PTL       A       + 
Sbjct: 328 RKGIEGGAALGSLVDSRGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHSETYY 387

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNA-GDMPS 350
            K   S      +    YG +L  TP V+  G    + L +  E        +    +P+
Sbjct: 388 VKI--SGERVAELKGITYGTMLRMTPRVIQLGDRPEVSLSLHIEDGSQKPNSSGLDGIPT 445

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
                 DT   +  G ++++ G+ +D++ +    +P L  IP LGALFR+          
Sbjct: 446 ISRTVVDTIARVGHGQSLLIGGIYRDELSESLSKVPFLGDIPYLGALFRSKESQTRRQVR 505

Query: 411 FIAATPFLVKPVAMRDLSR 429
                P L+       LS 
Sbjct: 506 LFIIEPRLIDDGIAHYLSL 524


>gi|308125809|ref|ZP_05777658.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus K5030]
 gi|308111516|gb|EFO49056.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus K5030]
          Length = 604

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 114/319 (35%), Gaps = 19/319 (5%)

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMV-SDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           ++ R +  ++  +    +     V  + ++     G   ++                   
Sbjct: 194 VLSRVVGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRD 253

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---SK 228
            Q      +K++  L+   + Q  ++V  +I ++  + L+Q+G       S         
Sbjct: 254 TQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDI 310

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSA 285
               D     V+ G   S K +LD  +       +  LE   + + ++ PTL       A
Sbjct: 311 KTTGDVDNGDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEA 370

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPV 340
              +      K V   T A  +    YG +L   P ++         I L +  E    +
Sbjct: 371 VLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKI 428

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                 D+PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR+
Sbjct: 429 PDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRS 488

Query: 401 SRFNREETEIFIAATPFLV 419
           +      T       P +V
Sbjct: 489 NTNTTRRTVRMFIIEPRIV 507


>gi|302038138|ref|YP_003798460.1| putative general secretion pathway protein D [Candidatus Nitrospira
           defluvii]
 gi|300606202|emb|CBK42535.1| putative General secretion pathway protein D [Candidatus Nitrospira
           defluvii]
          Length = 765

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 122/334 (36%), Gaps = 35/334 (10%)

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA------VELSETFLSQSGRNQYANS 179
           TL     ++  + E   D ++    + + +           +++     +++        
Sbjct: 235 TLYIISPNTKQKQEQYQDLMIRTFYLSSAKAKDMVALLKSMLDVKHIHGNEALNTIVIRD 294

Query: 180 SSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
             +KV     +   N   + +V   V + EV R + +  G  +     ++     F    
Sbjct: 295 QPEKVELAEKIIQANDREDSEVLFDVEVLEVNRTVDQTYGLSYPKQIGAALIPPGFTGAI 354

Query: 235 GGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            G    +    ++  +              L   ++ T  +TLA P +  ++ + A    
Sbjct: 355 AGDIAQQFTYRNLASLGQDSYLFKLPTNVQLDFFKQVTDAKTLAAPKVRVLNNKKAEVNI 414

Query: 290 GGQHLY--------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           G +                   V +++  TS+   D GV L   P +     + L+++ E
Sbjct: 415 GDKQPILLSTTNVLPGQAATGAVPTTSTVTSIEFRDTGVKLTVEPNIHLANELALKMKIE 474

Query: 336 VSEPVIGVNAGDMPSYR-----VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           V      V     P         R A+T + +  G TIVL GLL+++ ++ K  IP L  
Sbjct: 475 VIRLGDVVLLQQSPPITQFKFGNRSAETMLNVRDGETIVLGGLLQEEDRRTKVTIPWLGD 534

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           IP LG L  + +  R  TE+ +  TP +V  + +
Sbjct: 535 IPFLGNLLSSFKTQRVTTEVILTITPHIVNSLRL 568


>gi|323189406|gb|EFZ74687.1| hypothetical protein ECRN5871_2294 [Escherichia coli RN587/1]
          Length = 512

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 114/262 (43%), Gaps = 29/262 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ L+I  + Q+ + V+I +V  + L+Q+G   S T ++   + +F +       + 
Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TA 315

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             + S   + +  +F   ++AL++ +  + L++P++  ++   A         + T  S 
Sbjct: 316 QANISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346
               S+ +   G +L  TP +L      L                     ++      + 
Sbjct: 374 EKVASLESITSGTLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSSNQSNAQDASS 433

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P  +  +  T   L +G +++L G ++D     K+GIPLLS IP++G+LF ++   + 
Sbjct: 434 TLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493

Query: 407 ETEIFIAATPFLVKPVAMRDLS 428
                     FL+K   ++  S
Sbjct: 494 S-----VVRLFLIKATPIKSAS 510


>gi|328472347|gb|EGF43217.1| fimbrial assembly protein [Vibrio parahaemolyticus 10329]
          Length = 570

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 108/274 (39%), Gaps = 38/274 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  +    + ++G +   T  +   +              
Sbjct: 297 REIIESLDIP-VKQVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 355

Query: 230 ---------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERAT 267
                                   +      +     F V  +      +  L AL++ +
Sbjct: 356 YEGGGDGEGEEGGDGVGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQES 415

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               ++ P L   + + A    G +  Y   SSS+GATSVT     + L  TP +    R
Sbjct: 416 KAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNR 474

Query: 328 IGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           + L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  I    + +
Sbjct: 475 LVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKV 534

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           PLL  +P+LGALFR S  N  ++E+ I  TP +V
Sbjct: 535 PLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 568


>gi|262363857|gb|ACY60577.1| outer membrane secretin precursor [Yersinia pestis D106004]
          Length = 470

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 123/334 (36%), Gaps = 16/334 (4%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVE 162
              + +   D  +      +   L+R ++D+ I+ V + +  +       + Q    A  
Sbjct: 57  ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIPQAATRASAQAKVEADP 114

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
                + +    +      +++++ L+      + + ++I ++  D L ++G    + G 
Sbjct: 115 SLNAIIVRDSPERM--PMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 170

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279
            +G +        G   +   + ++  ++D    +     ++ LE   + + ++ PTL  
Sbjct: 171 RTGNNHQVVIKTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLT 230

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336
                A         Y    +      +    YG +L  TP VL+ G    I L +  E 
Sbjct: 231 QENAQAVID--HHETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIED 288

Query: 337 SEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                  +  D +P+      DT   +  G ++++ G+ +D++      +PLL  IP LG
Sbjct: 289 GNQKPNSSGIDGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLG 348

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ALFR        T       P ++       L+ 
Sbjct: 349 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 382


>gi|145284361|gb|ABP51942.1| AscC [Aeromonas veronii bv. sobria]
          Length = 617

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 116/307 (37%), Gaps = 15/307 (4%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +   L + ++D+   V+MV+          + Q   +A       + +    + A    
Sbjct: 218 GVATILAKLLSDAG--VQMVNGEGSKAATATSGQAIVQADPSLNAVIVRDAPERMAMYG- 274

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            K++  L+      + + ++I ++  + L Q+G    + G  +G ++       G     
Sbjct: 275 -KLIAALDKPAAR-IEVALSIIDINAEDLSQLGVDWRV-GIRTGSNQQVIIKTTGDRKGI 331

Query: 242 GGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            G  ++  ++D    +     ++ LE     + ++ PTL       A       +  K  
Sbjct: 332 EGGAALGSLVDSKGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHSETYYVKI- 390

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV-SEPVIGVNAGDMPSYRVR 354
            S      +    YG +L  TP V+  G    I L +  E  ++      A  +P+    
Sbjct: 391 -SGERVAELQGITYGTMLRMTPRVIQMGDRPEISLSLHIEDGNQKPNSAGADGIPTISRT 449

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             DT   +  G ++++ G+ +D++ +    +P L  IP LGALFR+       +      
Sbjct: 450 VVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRSKDTQTRRSVRLFII 509

Query: 415 TPFLVKP 421
            P L+  
Sbjct: 510 EPRLIDD 516


>gi|54294209|ref|YP_126624.1| type II protein secretion LspD [Legionella pneumophila str. Lens]
 gi|53754041|emb|CAH15514.1| type II protein secretion LspD [Legionella pneumophila str. Lens]
          Length = 791

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 24/251 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K V++ L+I    Q+ ++  +AEV    +  +G +      +  P               
Sbjct: 490 KTVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKD-----------FR 537

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G   +        F+  ++AL R      L+ P++  +  + A    G Q    T S  
Sbjct: 538 PGFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597

Query: 302 TGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMP 349
             A         T+    +  + L+  P +     I L+I      +       +    P
Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATSTTDNTTTP 657

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++ +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++  
Sbjct: 658 TFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRV 717

Query: 410 IFIAATPFLVK 420
           + +   P +++
Sbjct: 718 LMVFIKPIILR 728


>gi|297623561|ref|YP_003704995.1| type II and III secretion system protein [Truepera radiovictrix DSM
           17093]
 gi|297164741|gb|ADI14452.1| type II and III secretion system protein [Truepera radiovictrix DSM
           17093]
          Length = 560

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 7/230 (3%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             E Q+ ++V I EV  +  +++G   +        +  F+ + G  FV     F  +  
Sbjct: 338 RPERQINVQVRIQEVSANASERLGLNLTAAMDRFSTTL-FSGEGGLSFV-----FDAQRA 391

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +  F+   +L   E     R + +  +T ++   A+  +GG   Y  V    G  +    
Sbjct: 392 IAGFNLGAILDVYEEQGLSRRVDDSNVTVLNNGVATLQAGGTQ-YNYVRDEAGGVTRDEI 450

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            YGV++ FTP V +   + L +   V  P +    G +  +  RKA++ + L  G T+VL
Sbjct: 451 PYGVIVGFTPQVANNNSVILDLCARVDTPSLRDAEGRITEFLTRKANSRITLQPGQTVVL 510

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            GLL++ +      +P L  IP++G LF  +      TE+ I  T  +++
Sbjct: 511 GGLLQNQVVASNRSVPGLGDIPVVGNLFSTNTATELNTELLIIVTANVLE 560


>gi|148358852|ref|YP_001250059.1| type II protein secretion LspD [Legionella pneumophila str. Corby]
 gi|296106898|ref|YP_003618598.1| type II protein secretion LspD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280625|gb|ABQ54713.1| type II protein secretion LspD [Legionella pneumophila str. Corby]
 gi|295648799|gb|ADG24646.1| type II protein secretion LspD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 791

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 24/251 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K V++ L+I    Q+ ++  +AEV    +  +G +      +  P               
Sbjct: 490 KTVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKD-----------FR 537

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G   +        F+  ++AL R      L+ P++  +  + A    G Q    T S  
Sbjct: 538 PGFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597

Query: 302 TGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMP 349
             A         T+    +  + L+  P +     I L+I      +       +    P
Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTP 657

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++ +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++  
Sbjct: 658 TFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRV 717

Query: 410 IFIAATPFLVK 420
           + +   P +++
Sbjct: 718 LMVFIKPIILR 728


>gi|323153824|gb|EFZ40066.1| hypothetical protein ECEPECA14_4273 [Escherichia coli EPECa14]
          Length = 436

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 113/262 (43%), Gaps = 29/262 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ L+I  + Q+ + V+I +V  + L+Q+G   S T ++   S +F +       + 
Sbjct: 187 RQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGSIAFNSS------TA 239

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             + S   + +  +F   ++AL++ +  + L++P++  ++   A         + T  S 
Sbjct: 240 QANLSSSVISNANNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 297

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346
               S+ +   G +L  TP +L      L                     ++      + 
Sbjct: 298 EKVASLESITSGTLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 357

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P  +  +  T   L +G +++L G ++D     K+GIPLLS IP++G LF ++   + 
Sbjct: 358 ILPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGNLFSSTTKQKH 417

Query: 407 ETEIFIAATPFLVKPVAMRDLS 428
                     FL+K   ++  S
Sbjct: 418 S-----VVRLFLIKATPIKSAS 434


>gi|182412463|ref|YP_001817529.1| type II and III secretion system protein [Opitutus terrae PB90-1]
 gi|177839677|gb|ACB73929.1| type II and III secretion system protein [Opitutus terrae PB90-1]
          Length = 596

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 86/220 (39%), Gaps = 16/220 (7%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS----VKGVLDRFSFETVLHALERATAI 269
               S+T +++  + + A +      S  G  +    +  V     F  V+ AL   T  
Sbjct: 319 TIGSSLTNTTNSGNSTTANETLNLLNSLTGTTTNERALNAVFTADQFGLVISALNELTTA 378

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLS 324
           + ++ PT+  ++   A    G ++     +      S      T    G++L  TP V +
Sbjct: 379 KVVSNPTVVTLNNTEAFINIGKEYPIPNYTYNEQRGSFEVAGFTYKPIGIILKVTPQVNA 438

Query: 325 PGRIGLRIQTEVSEPVI-------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            G I L I+ EVS           G     +P  + +KA T + L  G T+ + GL+   
Sbjct: 439 RGFIKLMIEPEVSSFNDADSVNFGGATGARIPVIQTKKARTQISLKDGFTMGIGGLIDSQ 498

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           +      +P+L  IP+LG LF +   +     + I  T  
Sbjct: 499 VSNGSTKVPVLGSIPVLGRLFSSKTQSTATRNLLIFLTAK 538


>gi|52841551|ref|YP_095350.1| type II protein secretion LspD [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628662|gb|AAU27403.1| type II protein secretion LspD [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 791

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 24/251 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K V++ L+I    Q+ ++  +AEV    +  +G +      +  P               
Sbjct: 490 KTVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKD-----------FR 537

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G   +        F+  ++AL R      L+ P++  +  + A    G Q    T S  
Sbjct: 538 PGFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597

Query: 302 TGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMP 349
             A         T+    +  + L+  P +     I L+I      +       +    P
Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTP 657

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++ +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++  
Sbjct: 658 TFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRV 717

Query: 410 IFIAATPFLVK 420
           + +   P +++
Sbjct: 718 LMVFIKPIILR 728


>gi|222055737|ref|YP_002538099.1| type II and III secretion system protein [Geobacter sp. FRC-32]
 gi|221565026|gb|ACM20998.1| type II and III secretion system protein [Geobacter sp. FRC-32]
          Length = 805

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 149/382 (39%), Gaps = 34/382 (8%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V +  T+ ++ K+  +          + ++    L + D       +R  +    I V 
Sbjct: 244 KVLNENTIIVYTKSPEKTK-----QYEELIVQTFYLNKLDAKKAVNLIRTMLQVKKIYVN 298

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-QVTL 198
              + +V+      I+ +Q+ ++ ++   ++          +K       +A     V+ 
Sbjct: 299 EEMNALVIRDTPEVIEVAQKILDANDVPDAEVVLEVEVLEFTKSNAESFGLALSRYAVST 358

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
                      L  +  Q + T S++  + + + +    F   G +  +      F+F  
Sbjct: 359 AAAKVGAS-TFLSDVLVQPTSTSSTTTSTTTSSDNLLSLFRWRGFNGFLTVPNATFNFGK 417

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGV 314
            L          TLA P +   + + A F  G +    T S++  +     +V   D GV
Sbjct: 418 TLS------NSETLANPKIRVKNREKAKFNVGTRVPITTTSTNGTSIGVNVNVQYVDVGV 471

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTI 368
            ++  PT+     + +++  EVS  +     GD      + +   R  DT + L  G T 
Sbjct: 472 KVNAEPTIQLNNEVSIKLSLEVSTILSKDKIGDASSLTTVVTIGTRNLDTVLSLKDGETS 531

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           ++ GL++DD  + K+ + +L  IPI+G L  N+     ++E+ +A TP +V+ V +    
Sbjct: 532 IIGGLIQDDKSKSKQKVMVLGDIPIIGPLLSNNDNTNRKSELVLAITPRVVRSVTV---- 587

Query: 429 RPDDHYSVEDDAKAFFFNRVNK 450
                   E DA  F+  R ++
Sbjct: 588 -------PEGDAAGFWSGREDE 602


>gi|254229573|ref|ZP_04922986.1| Type II secretory pathway, component PulD [Vibrio sp. Ex25]
 gi|151937946|gb|EDN56791.1| Type II secretory pathway, component PulD [Vibrio sp. Ex25]
          Length = 458

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 14/233 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             + QV ++  I E      +++G    +  S +G        F  +  +          
Sbjct: 236 RPQKQVFIEAVITETELGDSQEVGVNMDLALSEAG--------FVSQPTAIKKAVDNLLF 287

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TS 306
            +   F  ++ A+ +    + L+ P +  +  +    T G    + T S  T        
Sbjct: 288 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 347

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +   D GV L   P V+    + L+I  +         A D+ +   R   T V++    
Sbjct: 348 IERKDVGVSLEVVPHVIGD-HVVLQIMQKSDSVTDSSIASDIIT-NTRTLQTVVKVKDRQ 405

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           TI L GL+  + +    G+P+L  +P+LGALFR+ + N  + E+ +     ++
Sbjct: 406 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 458


>gi|54297230|ref|YP_123599.1| type II protein secretion LspD [Legionella pneumophila str. Paris]
 gi|53751015|emb|CAH12426.1| type II protein secretion LspD [Legionella pneumophila str. Paris]
          Length = 791

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 24/251 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K V++ L+I    Q+ ++  +AEV    +  +G +      +  P               
Sbjct: 490 KTVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKD-----------FR 537

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G   +        F+  ++AL R      L+ P++  +  + A    G Q    T S  
Sbjct: 538 PGFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597

Query: 302 TGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMP 349
             A         T+    +  + L+  P +     I L+I      +       +    P
Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTP 657

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++ +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++  
Sbjct: 658 TFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRV 717

Query: 410 IFIAATPFLVK 420
           + +   P +++
Sbjct: 718 LMVFIKPIILR 728


>gi|283786644|ref|YP_003366509.1| T3SS structural protein EscC [Citrobacter rodentium ICC168]
 gi|15723915|gb|AAL06362.1|AF311901_14 EscC [Citrobacter rodentium]
 gi|282950098|emb|CBG89732.1| T3SS structural protein EscC [Citrobacter rodentium ICC168]
          Length = 512

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 115/262 (43%), Gaps = 29/262 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ L+I  + Q+ + V+I +V  + L+Q+G   S T ++   S +F +       + 
Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQSSIAFNSS------AA 315

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             + S   + +  +F   ++AL++ +  + L++P++  ++   A         + T  S 
Sbjct: 316 QANISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346
               S+ +   G +L  TP +L      L                    V++  I     
Sbjct: 374 EKVASLESITSGTLLRVTPRILDDTSNSLTGKRRERVRLLLDIQDGNQSVNQSNIQNAGS 433

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P  +  +  T   L +G +++L G ++D     K+GIPLLS IP++G+LF ++   + 
Sbjct: 434 LLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493

Query: 407 ETEIFIAATPFLVKPVAMRDLS 428
                     FL+K   +R  S
Sbjct: 494 S-----VVRLFLIKATPIRSAS 510


>gi|170766764|ref|ZP_02901217.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia albertii TW07627]
 gi|170124202|gb|EDS93133.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia albertii TW07627]
 gi|315617521|gb|EFU98127.1| conserved hypothetical protein [Escherichia coli 3431]
          Length = 512

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 118/262 (45%), Gaps = 29/262 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ L+I  + Q+ + V+I +V  + L+Q+G   S T ++   + +F +       + 
Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------AA 315

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             + S   + +  +F   ++AL++ +  + L++P++  ++   A         + T  S 
Sbjct: 316 QANISSSVISNANNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG------------RIGLRIQ---TEVSEPVIGVNAG 346
               S+ +   G +L  TP +L               R+ L IQ      S+  I     
Sbjct: 374 EKVASLESITSGTLLRVTPRILDDTPNSLTGKRRERVRLLLDIQDGNQSTSQSNIQDTGS 433

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P  +  +  T   L +G +++L G ++D     K+GIPLLS IP++G+LF ++   + 
Sbjct: 434 LLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493

Query: 407 ETEIFIAATPFLVKPVAMRDLS 428
                     FL+K   ++  S
Sbjct: 494 S-----VVRLFLIKATPIKSAS 510


>gi|297565761|ref|YP_003684733.1| type II and III secretion system protein [Meiothermus silvanus DSM
           9946]
 gi|296850210|gb|ADH63225.1| type II and III secretion system protein [Meiothermus silvanus DSM
           9946]
          Length = 771

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 26/251 (10%)

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
            L++  + QV L+V I  V   +++++G +      S G   +   + G   +     F 
Sbjct: 522 QLDVP-KQQVQLQVRIQAVNSSVIRELGLKWETI--SGGNLVASILEKGLSLI-----FD 573

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG-------------QSASFTSGGQH 293
               L   +    L+ALE     R +++  L   SG               A   +GG+ 
Sbjct: 574 ATRSLASLNIRATLNALESQNLSRRISDANLLVESGYGNDTSDLRQANAAGAELKAGGKL 633

Query: 294 LYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
           L  T ++ST    G  SV   D G+ L   P +   G+I L + T+  E    V A D  
Sbjct: 634 LIVTTTASTSQGGGQQSVREFDVGLTLRLRPRITPDGQIILEVYTQTGEQ-PQVLAPDRT 692

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              V    ++  +  G T+V+ GL++      +  +PLL  IPI+GALF+ +    ++ E
Sbjct: 693 FLPVNSTLSSFRIKDGQTVVMGGLVQTTTTNTENKVPLLGDIPIIGALFKQTTAENKQEE 752

Query: 410 IFIAATPFLVK 420
           + +  T  +VK
Sbjct: 753 LIVIITANIVK 763


>gi|225163988|ref|ZP_03726276.1| type II and III secretion system protein [Opitutaceae bacterium
           TAV2]
 gi|224801402|gb|EEG19710.1| type II and III secretion system protein [Opitutaceae bacterium
           TAV2]
          Length = 928

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 123/347 (35%), Gaps = 86/347 (24%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLKVTIAEVRRDILKQI 213
           Q +  A + +  +++Q+  N       ++V N+L       QV ++    +V+   L ++
Sbjct: 552 QGASLAYDGTAIYVTQTTANL------ERVRNILARYNDVRQVEIEAKFMDVQEGSLDEL 605

Query: 214 GFQH---SITGSSSGPSKSFAADFGGKF-------------------------------- 238
           G      S +G  +  + +      G F                                
Sbjct: 606 GISWMVNSFSGKFNAGTGTVVRSLSGAFGVTGASGGGGQIVTPFGTVDVPLSPPATPGTA 665

Query: 239 ---VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
               + G   S+ GV+  F     + A+ +      L+ P +T +SG  A      +  Y
Sbjct: 666 DTGSAVGNIASITGVMGNFDVAAQIRAIAQKQGSDLLSAPKVTVLSGNPAFMVVAQELRY 725

Query: 296 KTVSSSTGAT----------------------SVTTHDYGVVLHFTPTVLSPG-RIGLRI 332
                 T +                          T + GV L  TPTV      I L +
Sbjct: 726 PQSYGETESEVGTSSGNGGGAAGVTITPGTPEEFVTRNVGVELRVTPTVEDDNYSITLDL 785

Query: 333 QTEV------------SEPVIGVNAGDMPS------YRVRKADTTVELPSGGTIVLAGLL 374
             +V            S  + G     +PS      +  R+  T V +  G T+V+ GL 
Sbjct: 786 NPKVTEFEGFIEYGGSSVAISGNTTVTLPSGYYQPIFSTREVTTKVTVWDGATLVMGGLT 845

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +++++++ + +P+L  IP LG LF++   + ++  + +  T  LV P
Sbjct: 846 REEVKRVNDKVPILGDIPFLGRLFKSKGESSQKRNLLVFVTANLVSP 892


>gi|307610026|emb|CBW99559.1| type II protein secretion LspD [Legionella pneumophila 130b]
          Length = 791

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 24/251 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K V++ L+I    Q+ ++  +AEV    +  +G +      +  P               
Sbjct: 490 KTVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKD-----------FR 537

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G   +        F+  ++AL R      L+ P++  +  + A    G Q    T S  
Sbjct: 538 PGFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597

Query: 302 TGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMP 349
             A         T+    +  + L+  P +     I L+I      +       +    P
Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTP 657

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++ +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++  
Sbjct: 658 TFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRV 717

Query: 410 IFIAATPFLVK 420
           + +   P +++
Sbjct: 718 LMVFIKPIILR 728


>gi|145301440|ref|YP_001144279.1| AscC protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|66947980|emb|CAE83117.1| AscC protein [Aeromonas salmonicida subsp. salmonicida]
 gi|88698168|gb|ABD48952.1| AscC [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142856322|gb|ABO92531.1| AscC protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 617

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 116/307 (37%), Gaps = 15/307 (4%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +   L + ++D+   V+MV+          + Q   +A       + +    + A    
Sbjct: 218 GVATILAKLLSDAG--VQMVNGEGNKAATATSGQAIVQADPSLNAVIVRDAPERMAMYG- 274

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            K++  L+      + + ++I ++  + L Q+G    + G  +G ++       G     
Sbjct: 275 -KLIAALDKPAAR-IEVALSIIDINAEDLSQLGVDWRV-GIRTGSNQQVIIKTTGDRKGI 331

Query: 242 GGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            G  ++  ++D    +     ++ LE     + ++ PTL       A       +  K  
Sbjct: 332 EGGAALGSLVDSKGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHSETYYVKI- 390

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV-SEPVIGVNAGDMPSYRVR 354
            S      +    YG +L  TP V+  G    I L +  E  ++      A  +P+    
Sbjct: 391 -SGERVAELQGITYGTMLRMTPRVIQMGDRPEISLSLHIEDGNQKPNSAGADGIPTISRT 449

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             DT   +  G ++++ G+ +D++ +    +P L  IP LGALFR+       +      
Sbjct: 450 VVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRSKDTQTRRSVRLFII 509

Query: 415 TPFLVKP 421
            P L+  
Sbjct: 510 EPRLIDD 516


>gi|269968410|ref|ZP_06182426.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269826958|gb|EEZ81276.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 450

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 14/233 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             + QV ++  I E      +++G    +  S +G        F  +  +          
Sbjct: 228 RPQKQVFIEAVITETELGDSQEVGVNMDLALSEAG--------FVSQPTAIKKAVDNLLF 279

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TS 306
            +   F  ++ A+ +    + L+ P +  +  +    T G    + T S  T        
Sbjct: 280 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 339

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +   D GV L   P V+    + L+I  +         A D+ +   R   T V++    
Sbjct: 340 IERKDVGVSLEVVPHVIGD-HVVLQIMQKSDSVTDSSIASDIIT-NTRTLQTVVKVKDRQ 397

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           TI L GL+  + +    G+P+L  +P+LGALFR+ + N  + E+ +     ++
Sbjct: 398 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 450


>gi|225874165|ref|YP_002755624.1| transporter, outer bacterial membrane secretin (Secretin) family
           [Acidobacterium capsulatum ATCC 51196]
 gi|225794395|gb|ACO34485.1| transporter, outer bacterial membrane secretin (Secretin) family
           [Acidobacterium capsulatum ATCC 51196]
          Length = 583

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 123/332 (37%), Gaps = 51/332 (15%)

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
           ++    D   ++  LR     + I     +DT+V+ G           + L++  ++   
Sbjct: 254 NVSQASDFTGIQTALRNVFQSARIFGIESNDTIVMLGTPDE-------LRLAKMLIASLD 306

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
             +                   +V + VT+ EV RD +++IG           P  S   
Sbjct: 307 EPK------------------PEVLVDVTVMEVSRDKMREIGLS---------PPTSLTV 339

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           + G     E               +     L   +  + L  P L A++G+ AS   G +
Sbjct: 340 NSGSSQTLE--QIGHTSAYSITIGQAAADFLLTDSNTQILQNPRLRALNGEQASLKLGER 397

Query: 293 HLYKTVSSS--TGATS------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342
               T S +  TG+TS          D GV +  TP +     + L++  +VS       
Sbjct: 398 LPVATGSYTYATGSTSAAAETQFQYLDVGVNIDMTPQIHLDHTVTLKLGVDVSSENGTED 457

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +   + P     KA   V L +G + +LAGLLK ++ Q   G P   +IP +  LF   +
Sbjct: 458 LEGVEEPIISQEKAQQIVRLKNGESTILAGLLKKEVSQTVSGWPGFGEIPFMKYLFTTQK 517

Query: 403 FNREETEIFIAATPFLVK-----PVAMRDLSR 429
                 E+    TP +++     P+ MR++  
Sbjct: 518 HEVTSDELVFMITPHIIRSPQVDPLTMREIDT 549


>gi|34556961|ref|NP_906776.1| putative type II secretion system D [Wolinella succinogenes DSM
           1740]
 gi|34482676|emb|CAE09676.1| PUTATIVE TYPE II SECRETION SYSTEM D [Wolinella succinogenes]
          Length = 731

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 120/355 (33%), Gaps = 62/355 (17%)

Query: 146 VLHGMVRTIQDSQ----RAVELSETFLSQSGRNQYANSSSK-----KVMNLLNIAGEDQV 196
           +L G + + Q  Q    ++   +      +G      +S +     + +  L+   + QV
Sbjct: 364 ILGGSLESSQAQQARTTKSESGAVIVNRGAGLVTVTGTSPQVDRVAQYIEELHARLQSQV 423

Query: 197 TLKVTIAEVRRDILKQIGFQHS-------------------------------ITGSSSG 225
            + V+I  VR    +  G   +                               IT   SG
Sbjct: 424 MIDVSILTVRHSKGQTTGVDWNQLYNLQNIAIHTKSTTTSNSSGSGSTSDTTSITTGPSG 483

Query: 226 PSKSFAADFGGKFVSEGG----DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
            S       G   +  G      ++V       S   V+  L+    + +++ P +  ++
Sbjct: 484 TSIQQGTASGASVLGVGSHSQVGYAVNIFSQGVSLTRVIEFLQSYGDVTSVSNPKVLTLN 543

Query: 282 GQSASFTSGGQHLYKTVS-----------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            Q A  + G    Y+  +           ++   T   +   GV+L  TP+V     I L
Sbjct: 544 NQPAMISVGNIIRYRKSTVFQTSGSNTGTNTNTDTEYPSVFAGVLLDITPSVF-NDEIML 602

Query: 331 RIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I   +++                P+    +  + V +  G  IVL GL+    Q+ +  
Sbjct: 603 KINPSITQTKSTDVENASTALETPPNLSTNQLSSLVRIKDGEKIVLGGLISKSNQKKENK 662

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
           +PLL  +P+LG LF  +       E+ I  TP ++K      L         E D
Sbjct: 663 VPLLGDVPVLGYLFSYNADVESTDEMVIVITPHIIKGSQGPSLQELGYRLMGEKD 717


>gi|150021613|ref|YP_001306967.1| type II and III secretion system protein [Thermosipho melanesiensis
            BI429]
 gi|149794134|gb|ABR31582.1| type II and III secretion system protein [Thermosipho melanesiensis
            BI429]
          Length = 1302

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 129/349 (36%), Gaps = 42/349 (12%)

Query: 78   DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
            ++ V     +Y+F         +L     K +      + +++  ++  +  +  +S   
Sbjct: 990  NIEVKKEDGIYVFD--------LLTSEGTKTINTFTFSVPKNVEKIQKLIEFYGGNSF-- 1039

Query: 138  VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
            V+  +  V+  G+    + +       E +L+                            
Sbjct: 1040 VDSAAGVVIATGI--DAKIAGEIRNYIEKYLNSKLA-----------------------L 1074

Query: 198  LKVTIA--EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-FSVKGVLDRF 254
            ++V +   E    +   +G   S  G+ S          G   + +  +     G ++  
Sbjct: 1075 IEVRVVDEEFTNSLDLTLGELTSNIGNLSKDGFDITLTLGEMSLEKIVEKLLSVGTVNEL 1134

Query: 255  SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            + +            + LA P + A SG+ AS   G +     ++++     +   + GV
Sbjct: 1135 TLKLNGKINATDKDTKILASPNVVAKSGEKASILIGDKIPI-VLTTAENTQEIKYIESGV 1193

Query: 315  VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
             L  TP V +   I L +  +VS     V  V    +P  R R+ ++ + L    T+++ 
Sbjct: 1194 TLEITPFVNADNTIDLELNIKVSSFDWDVKNVYGLTLPLERTREFNSKISLKENETLIIG 1253

Query: 372  GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            GL +++  + +  +P+L  +PI+G  F+  + +  +  I I  +  +V+
Sbjct: 1254 GLTREENSKTESKVPILGDLPIIGKFFKTEKNDLVKRNIIILISAKVVE 1302


>gi|215488986|ref|YP_002331417.1| T3SS structure protein EscC [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967940|ref|ZP_07782152.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|54311608|emb|CAG17523.1| EscC protein [Escherichia coli]
 gi|215267058|emb|CAS11503.1| T3SS structure protein EscC [Escherichia coli O127:H6 str.
           E2348/69]
 gi|221361489|emb|CAX18660.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361550|emb|CAX18740.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|312287501|gb|EFR15409.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|320193805|gb|EFW68438.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli WV_060327]
 gi|320201526|gb|EFW76105.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli EC4100B]
          Length = 512

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 114/262 (43%), Gaps = 29/262 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ L+I  + Q+ + V+I +V  + L+Q+G   S T ++   + +F +       + 
Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TA 315

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             + S   + +  +F   ++AL++ +  + L++P++  ++   A         + T  S 
Sbjct: 316 QANISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346
               S+ +   G +L  TP +L      L                     ++      + 
Sbjct: 374 EKVASLESITSGTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 433

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P  +  +  T   L +G +++L G ++D     K+GIPLLS IP++G+LF ++   + 
Sbjct: 434 TLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493

Query: 407 ETEIFIAATPFLVKPVAMRDLS 428
                     FL+K   ++  S
Sbjct: 494 S-----VVRLFLIKATPIKSAS 510


>gi|15804236|ref|NP_290275.1| hypothetical protein Z5126 [Escherichia coli O157:H7 EDL933]
 gi|15833829|ref|NP_312602.1| EscC [Escherichia coli O157:H7 str. Sakai]
 gi|168748648|ref|ZP_02773670.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4113]
 gi|168753525|ref|ZP_02778532.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4401]
 gi|168759822|ref|ZP_02784829.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4501]
 gi|168766122|ref|ZP_02791129.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4486]
 gi|168772329|ref|ZP_02797336.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4196]
 gi|168779857|ref|ZP_02804864.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4076]
 gi|168785590|ref|ZP_02810597.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC869]
 gi|168798671|ref|ZP_02823678.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC508]
 gi|195936258|ref|ZP_03081640.1| EscC [Escherichia coli O157:H7 str. EC4024]
 gi|208808738|ref|ZP_03251075.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208812386|ref|ZP_03253715.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208819063|ref|ZP_03259383.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209395836|ref|YP_002273173.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4115]
 gi|217325945|ref|ZP_03442029.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. TW14588]
 gi|254795650|ref|YP_003080487.1| type III needle complex subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225794|ref|ZP_05940075.1| type III needle complex subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258839|ref|ZP_05951372.1| type III needle complex subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285063|ref|YP_003501881.1| escC [Escherichia coli O55:H7 str. CB9615]
 gi|12518466|gb|AAG58839.1|AE005596_9 escC [Escherichia coli O157:H7 str. EDL933]
 gi|3414909|gb|AAC31520.1| L0041 [Escherichia coli]
 gi|13364050|dbj|BAB37998.1| type III secretion system EscC protein [Escherichia coli O157:H7
           str. Sakai]
 gi|187771452|gb|EDU35296.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4196]
 gi|188016923|gb|EDU55045.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4113]
 gi|189002416|gb|EDU71402.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4076]
 gi|189358814|gb|EDU77233.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4401]
 gi|189364509|gb|EDU82928.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4486]
 gi|189369868|gb|EDU88284.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4501]
 gi|189374516|gb|EDU92932.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC869]
 gi|189378854|gb|EDU97270.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC508]
 gi|195957526|gb|ACG59637.1| type III secretion system protein EscC [Escherichia coli O157:H7]
 gi|195957585|gb|ACG59695.1| type III secretion system protein EscC [Escherichia coli]
 gi|195957642|gb|ACG59751.1| EscC [Escherichia coli]
 gi|208728539|gb|EDZ78140.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208733663|gb|EDZ82350.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208739186|gb|EDZ86868.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209157236|gb|ACI34669.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4115]
 gi|217322166|gb|EEC30590.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. TW14588]
 gi|254595050|gb|ACT74411.1| type III needle complex subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|255348323|gb|ACU09465.1| type III secretion outer membrane pore YscC/HrcC family
           [Escherichia coli]
 gi|290764936|gb|ADD58897.1| escC [Escherichia coli O55:H7 str. CB9615]
 gi|320191251|gb|EFW65901.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC1212]
 gi|320639365|gb|EFX08980.1| outer membrane secretin SsaC [Escherichia coli O157:H7 str. G5101]
 gi|320644809|gb|EFX13845.1| outer membrane secretin SsaC [Escherichia coli O157:H- str. 493-89]
 gi|320650073|gb|EFX18569.1| outer membrane secretin SsaC [Escherichia coli O157:H- str. H 2687]
 gi|320655420|gb|EFX23355.1| outer membrane secretin SsaC [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661047|gb|EFX28483.1| outer membrane secretin SsaC [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666172|gb|EFX33178.1| outer membrane secretin SsaC [Escherichia coli O157:H7 str. LSU-61]
 gi|326337301|gb|EGD61136.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. 1044]
 gi|326341675|gb|EGD65464.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. 1125]
          Length = 512

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 114/262 (43%), Gaps = 29/262 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ L+I  + Q+ + V+I +V  + L+Q+G   S T ++   + +F +       + 
Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TA 315

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             + S   + +  +F   ++AL++ +  + L++P++  ++   A         + T  S 
Sbjct: 316 QANISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346
               S+ +   G +L  TP +L      L                     ++      + 
Sbjct: 374 EKVASLESITSGTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 433

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P  +  +  T   L +G +++L G ++D     K+GIPLLS IP++G+LF ++   + 
Sbjct: 434 TLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493

Query: 407 ETEIFIAATPFLVKPVAMRDLS 428
                     FL+K   ++  S
Sbjct: 494 S-----VVRLFLIKATPIKSAS 510


>gi|254442891|ref|ZP_05056367.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198257199|gb|EDY81507.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 842

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 132/374 (35%), Gaps = 94/374 (25%)

Query: 142 SDTVVLHGMVRTIQDSQRAVELSE-TFLSQSGRNQYANSSS----------KKVMNLLNI 190
            D V   G+    Q  +  ++ +   F++  G     + SS          +++ N+LN 
Sbjct: 435 GDRVRDQGVATDAQTIRNFLQQAGVDFVATEGSTLAYDGSSMIVTQTRRNIERIRNILNR 494

Query: 191 -AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF------------------- 230
                QV ++    E++   L ++GF   I    S     +                   
Sbjct: 495 YTDVKQVEIEAKFLEIQEGSLDELGFDWVIDERGSPNDPQYETGEVYRSSMRTLAQAAAP 554

Query: 231 ------------------AADFGGKFVSEGGD---FSVKGVLDRFSFETVLHALERATAI 269
                             A D  G  +   G     +V G ++  +    + AL + +  
Sbjct: 555 SSVSSSILVDGEVIDNIDAPDLPGSNLLGAGAVPFTNVIGNINSVNLNVAIRALSQQSGS 614

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATS------------------- 306
             L+ P +T +SG  A      +  Y T  S T    G+TS                   
Sbjct: 615 DLLSAPKVTVLSGNEAKINVSQEFRYPTRYSDTESDVGSTSGSLTGGSAGVTITPGTPED 674

Query: 307 VTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSE---------PVIGVNAGDM-------- 348
             T + GV L  TP V      I L +   V+E         P I ++ G          
Sbjct: 675 FVTRNVGVELAVTPIVEEDDYSITLDLNPRVTEFEGFVEYGGPSIAISGGRTVKTPSGFY 734

Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P + VR+ +T V +  G T+V+ G+ ++D+  + + IP L  IP +G LFR+   +  +
Sbjct: 735 QPIFAVREVETKVTIWDGATVVMGGMTREDVVTVNDKIPFLGDIPFVGRLFRSEGESSAK 794

Query: 408 TEIFIAATPFLVKP 421
             + I  T  LV P
Sbjct: 795 RNLLIFVTANLVSP 808


>gi|260869693|ref|YP_003236095.1| T3SS structure protein EscC [Escherichia coli O111:H- str. 11128]
 gi|221361432|emb|CAX18585.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|257766049|dbj|BAI37544.1| T3SS structure protein EscC [Escherichia coli O111:H- str. 11128]
 gi|323178902|gb|EFZ64478.1| hypothetical protein ECOK1180_2636 [Escherichia coli 1180]
          Length = 512

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 114/262 (43%), Gaps = 29/262 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ L+I  + Q+ + V+I +V  + L+Q+G   S T ++   + +F +       + 
Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TA 315

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             + S   + +  +F   ++AL++ +  + L++P++  ++   A         + T  S 
Sbjct: 316 QANISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346
               S+ +   G +L  TP +L      L                     ++      + 
Sbjct: 374 EKVASLESITSGTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 433

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P  +  +  T   L +G +++L G ++D     K+GIPLLS IP++G+LF ++   + 
Sbjct: 434 TLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493

Query: 407 ETEIFIAATPFLVKPVAMRDLS 428
                     FL+K   ++  S
Sbjct: 494 S-----VVRLFLIKATPIKSAS 510


>gi|312963506|ref|ZP_07777988.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
 gi|311282312|gb|EFQ60911.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
          Length = 641

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 114/255 (44%), Gaps = 10/255 (3%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGK 237
           S+ +K++  ++IA + +VT+ + + EV  +    +G Q+  + G S G   +  A   G 
Sbjct: 313 SAVEKLVEAIDIA-QSEVTIDIQVLEVSLNDELNLGIQYPESVGLSVGNLANVPAGLAGI 371

Query: 238 FVSE-GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
            +S   G      +LD  S    ++ L+R+    TLA P +   + + A+   G +    
Sbjct: 372 PLSALRGINGDNILLDAGSTSARINMLQRSGNTVTLANPRVRVRNREEAAVNIGDKVPMV 431

Query: 297 --TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPS 350
             T ++    +SVT  D G+ +   P +     + L +  E+S          N      
Sbjct: 432 TTTTANDITTSSVTYQDVGLQITVKPNISLSDEVNLELNVEMSHITKRIPASENVQATFE 491

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETE 409
              R   T +   +  T +++GL++        G+P LS+IP +G  LF  ++  +++TE
Sbjct: 492 LGSRSTKTLLTARNNETQIVSGLIRTADVDEGAGLPWLSQIPWIGKKLFGTNQSTQQKTE 551

Query: 410 IFIAATPFLVKPVAM 424
           I +  TP + + + +
Sbjct: 552 IILLLTPRIERNLDL 566


>gi|260221518|emb|CBA30162.1| hypothetical protein Csp_C22170 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 520

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 122/365 (33%), Gaps = 53/365 (14%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            +     ++V +G  R++  S +A  L+   + +  R         K +     + E QV
Sbjct: 164 ELTGAIKSLVGNGEGRSVVASPQAGILAVRAMPEELRQ------VDKFLKATQASVERQV 217

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---GDFSVKGV--- 250
            L+  + EV      Q G       +      +      G   +     G  ++ G    
Sbjct: 218 MLEAKVVEVELRDGYQSGVNWGAFNNDGSTQVAAGVIGSGVTSTNAFVQGTTTINGAVAF 277

Query: 251 -------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                        L    F  VL  LE    ++TL+ P +  ++ Q A    G    + T
Sbjct: 278 PSVATGGGLFGLALATSQFGAVLGFLETQGDVQTLSSPRVATLNNQKAVLKVGTDEFFVT 337

Query: 298 ----------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
                            +S+    ++T    G+ L  TP +     + L +   ++    
Sbjct: 338 NVSGGTNSSSGTSSSTTTSTLPTVTLTPFFSGISLDVTPQIDDGVNVTLHVHPSLTTVTE 397

Query: 342 GVNAGDM----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
                D+           S  V + DT V +  G  + + GL++ +  +   GIP  + +
Sbjct: 398 KSKQIDLGSAGNFKLPLASSAVNETDTLVRIQDGSIVAIGGLMQLESSRNASGIPGTTSM 457

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P LGALF N      + E+ +   P +++     D            D       RV ++
Sbjct: 458 PGLGALFGNRATQGRKKEVIVLIKPTIIR--TAADWEAQGRRARAAIDDMDATRARVIQL 515

Query: 452 YGPKE 456
            GP +
Sbjct: 516 DGPAK 520


>gi|84785906|gb|ABC62092.1| secretion and cellular translocation protein C [Chlamydophila
           psittaci]
          Length = 672

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 117/332 (35%), Gaps = 54/332 (16%)

Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
            ++  KV++LLN       QV ++V I E   +     G Q    G   G     +    
Sbjct: 328 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLS 387

Query: 236 GKFVSEGGDFSVK--------------------------------GVLDR---------F 254
              ++     +V                                 G++            
Sbjct: 388 NTGLANPAKSTVPPAKPSTGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFL 447

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309
           +   +L AL++      +  P + A   Q ASF  G    ++T S+      T   ++  
Sbjct: 448 TLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEY 507

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L    TV     + L+I+  +SE +        P      A T +++P G  +V
Sbjct: 508 EDIGVNLVVASTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLV 566

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           ++G ++D   ++  G+PLL+ IP++  LF  +   R++    +   P ++          
Sbjct: 567 MSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNTMMFIKPKVISSFEEGTKLT 626

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
             + Y    +A     N  +    P+ A E +
Sbjct: 627 NKEGYRYNWEA-----NEGSMQVAPRHAPECQ 653


>gi|238793311|ref|ZP_04636937.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia intermedia ATCC 29909]
 gi|238727280|gb|EEQ18808.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia intermedia ATCC 29909]
          Length = 486

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 98/237 (41%), Gaps = 15/237 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             Q+ + VTI +V    + Q+G   S + S  G   SF ++ G        D     + D
Sbjct: 258 PVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSNSG----KNSADGFSTVIGD 313

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +F   L+AL++ +  R L+ P++  ++   A         + T         + +   
Sbjct: 314 TGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLD--KNVTFYTKLQGDKVAKLESITS 371

Query: 313 GVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368
           G +L  TP ++       + L +  +  +    +++ + +P  +     T   L  G ++
Sbjct: 372 GSLLRVTPRMIDADGVKEVLLNLNIQDGQQQAAISSSEPLPEIQNSDISTQATLRVGQSL 431

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           +L G ++D   + +  IPLL  IP+LG LFR++               FL+K V + 
Sbjct: 432 LLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTDKQSHS-----VVRLFLIKAVPVN 483


>gi|31742526|gb|AAK35045.2|AF330136_1 type II protein secretion LspD [Legionella pneumophila 130b]
          Length = 730

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 24/251 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K V++ L+I    Q+ ++  +AEV    +  +G +      +  P               
Sbjct: 429 KTVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKD-----------FR 476

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G   +        F+  ++AL R      L+ P++  +  + A    G Q    T S  
Sbjct: 477 PGFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 536

Query: 302 TGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMP 349
             A         T+    +  + L+  P +     I L+I      +       +    P
Sbjct: 537 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTP 596

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++ +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++  
Sbjct: 597 TFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRV 656

Query: 410 IFIAATPFLVK 420
           + +   P +++
Sbjct: 657 LMVFIKPIILR 667


>gi|255507170|ref|ZP_05382809.1| general secretion pathway protein D [Chlamydia trachomatis
           D(s)2923]
 gi|296435178|gb|ADH17356.1| general secretion pathway protein D [Chlamydia trachomatis E/150]
 gi|296438898|gb|ADH21051.1| general secretion pathway protein D [Chlamydia trachomatis E/11023]
          Length = 760

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   +            + ++    + V  G  +        +  S+T        + A 
Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234
              K ++  L++  +  V ++V + E +    ++ G      G         + S+A+  
Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             +F+ +GG    KG++  + F      L     +R  A P++  ++   A      +  
Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
              VSS           YG+++   P +      G+  + ++T+++    G N  D P  
Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F
Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687

Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465
           +  TP ++  P    +        +   +   F    V      K+A E +     G+  
Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747

Query: 466 KGAIG 470
            G+ G
Sbjct: 748 SGSRG 752


>gi|289525617|emb|CBJ15095.1| general secretion pathway protein D [Chlamydia trachomatis Sweden2]
          Length = 760

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   +            + ++    + V  G  +        +  S+T        + A 
Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234
              K ++  L++  +  V ++V + E +    ++ G      G         + S+A+  
Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             +F+ +GG    KG++  + F      L     +R  A P++  ++   A      +  
Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
              VSS           YG+++   P +      G+  + ++T+++    G N  D P  
Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F
Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687

Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465
           +  TP ++  P    +        +   +   F    V      K+A E +     G+  
Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747

Query: 466 KGAIG 470
            G+ G
Sbjct: 748 SGSRG 752


>gi|237803001|ref|YP_002888195.1| general secretion pathway protein D [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231274235|emb|CAX11029.1| general secretion pathway protein D [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 760

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   +            + ++    + V  G  +        +  S+T        + A 
Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234
              K ++  L++  +  V ++V + E +    ++ G      G         + S+A+  
Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             +F+ +GG    KG++  + F      L     +R  A P++  ++   A      +  
Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
              VSS           YG+++   P +      G+  + ++T+++    G N  D P  
Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F
Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687

Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465
           +  TP ++  P    +        +   +   F    V      K+A E +     G+  
Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747

Query: 466 KGAIG 470
            G+ G
Sbjct: 748 SGSRG 752


>gi|255317692|ref|ZP_05358938.1| general secretion pathway protein D [Chlamydia trachomatis 6276s]
          Length = 760

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   +            + ++    + V  G  +        +  S+T        + A 
Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234
              K ++  L++  +  V ++V + E +    ++ G      G         + S+A+  
Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             +F+ +GG    KG++  + F      L     +R  A P++  ++   A      +  
Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
              VSS           YG+++   P +      G+  + ++T+++    G N  D P  
Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F
Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687

Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465
           +  TP ++  P    +        +   +   F    V      K+A E +     G+  
Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747

Query: 466 KGAIG 470
            G+ G
Sbjct: 748 SGSRG 752


>gi|76789309|ref|YP_328395.1| general secretion pathway protein D [Chlamydia trachomatis
           A/HAR-13]
 gi|76167839|gb|AAX50847.1| general secretion pathway protein D [Chlamydia trachomatis
           A/HAR-13]
          Length = 760

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   +            + ++    + V  G  +        +  S+T        + A 
Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234
              K ++  L++  +  V ++V + E +    ++ G      G         + S+A+  
Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             +F+ +GG    KG++  + F      L     +R  A P++  ++   A      +  
Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
              VSS           YG+++   P +      G+  + ++T+++    G N  D P  
Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F
Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687

Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465
           +  TP ++  P    +        +   +   F    V      K+A E +     G+  
Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747

Query: 466 KGAIG 470
            G+ G
Sbjct: 748 SGSRG 752


>gi|15605301|ref|NP_220087.1| general secretion pathway protein D [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3329013|gb|AAC68174.1| Gen. Secretion Protein D [Chlamydia trachomatis D/UW-3/CX]
 gi|297748702|gb|ADI51248.1| General secretion pathway protein D [Chlamydia trachomatis D-EC]
 gi|297749582|gb|ADI52260.1| General secretion pathway protein D [Chlamydia trachomatis D-LC]
          Length = 760

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   +            + ++    + V  G  +        +  S+T        + A 
Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234
              K ++  L++  +  V ++V + E +    ++ G      G         + S+A+  
Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             +F+ +GG    KG++  + F      L     +R  A P++  ++   A      +  
Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
              VSS           YG+++   P +      G+  + ++T+++    G N  D P  
Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F
Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687

Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465
           +  TP ++  P    +        +   +   F    V      K+A E +     G+  
Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747

Query: 466 KGAIG 470
            G+ G
Sbjct: 748 SGSRG 752


>gi|255311391|ref|ZP_05353961.1| general secretion pathway protein D [Chlamydia trachomatis 6276]
 gi|296436106|gb|ADH18280.1| general secretion pathway protein D [Chlamydia trachomatis G/9768]
 gi|296437034|gb|ADH19204.1| general secretion pathway protein D [Chlamydia trachomatis G/11222]
 gi|296437966|gb|ADH20127.1| general secretion pathway protein D [Chlamydia trachomatis G/11074]
 gi|297140467|gb|ADH97225.1| general secretion pathway protein D [Chlamydia trachomatis G/9301]
          Length = 760

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   +            + ++    + V  G  +        +  S+T        + A 
Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234
              K ++  L++  +  V ++V + E +    ++ G      G         + S+A+  
Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             +F+ +GG    KG++  + F      L     +R  A P++  ++   A      +  
Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
              VSS           YG+++   P +      G+  + ++T+++    G N  D P  
Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F
Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687

Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465
           +  TP ++  P    +        +   +   F    V      K+A E +     G+  
Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747

Query: 466 KGAIG 470
            G+ G
Sbjct: 748 SGSRG 752


>gi|193070395|ref|ZP_03051337.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli E110019]
 gi|192956334|gb|EDV86795.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli E110019]
          Length = 512

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 114/262 (43%), Gaps = 29/262 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ L+I  + Q+ + V+I +V  + L+Q+G   S T ++   + +F +       + 
Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TA 315

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             + S   + +  +F   ++AL++ +  + L++P++  ++   A         + T  S 
Sbjct: 316 QANISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346
               S+ +   G +L  TP +L      L                     ++      + 
Sbjct: 374 EKVASLESITSGTLLRVTPRILDGSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 433

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P  +  +  T   L +G +++L G ++D     K+GIPLLS IP++G+LF ++   + 
Sbjct: 434 TLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493

Query: 407 ETEIFIAATPFLVKPVAMRDLS 428
                     FL+K   ++  S
Sbjct: 494 S-----VVRLFLIKATPIKSAS 510


>gi|102227325|gb|ABF70182.1| AscC [Aeromonas hydrophila]
          Length = 614

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 120/330 (36%), Gaps = 17/330 (5%)

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +   D  +E     +   L R ++D+   V+MV+          + Q   +A      
Sbjct: 205 RSIQYRDTDVEAP--GVATILSRLLSDAG--VQMVNGEGTKGSTSHSGQAIVQADPSLNA 260

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
            L +    + A     K++  L+      + + ++I ++  + L Q+G    + G  +G 
Sbjct: 261 VLVRDAPERMAMYG--KLIAALDKPSAR-IEVALSIIDINAEDLSQLGVDWRV-GIRTGS 316

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQ 283
           ++       G      G  ++  ++D    +     ++ LE     + ++ PTL      
Sbjct: 317 NQQVIIKTTGDRKGIEGGAALGSLVDSKGLDYLLARVNLLENQGNAQVVSRPTLLTQENT 376

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPV 340
            A       +  K   S      +    YG +L  TP V+  G    + L +  E     
Sbjct: 377 QAVIDHSETYYVKI--SGERVAELKGITYGTMLRMTPRVIQLGDRPEVSLSLHIEDGNQK 434

Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +    +P+      DT   +  G ++++ G+ +D++ +    +P L  IP LGALFR
Sbjct: 435 PNSSGLDGIPTISRTVVDTIARVGHGQSLLIGGIYRDELSESLSKVPFLGDIPYLGALFR 494

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           +               P L+       LS 
Sbjct: 495 SKESQTRRQVRLFIIEPRLIDDGIAHYLSL 524


>gi|238764026|ref|ZP_04624981.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia kristensenii ATCC 33638]
 gi|238697697|gb|EEP90459.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia kristensenii ATCC 33638]
          Length = 481

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 16/247 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + ++  L++    Q+ + VTI +V    + Q+G   S + S  G   SF +   G+  + 
Sbjct: 243 RSLITQLDLR-PVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNS---GEPQNS 298

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              FS   + D  +F   L+AL++ +  R L+ P++  ++   A         + T    
Sbjct: 299 ANGFSTV-IGDSGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLD--KNVTFYTKLQG 355

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKAD 357
                + +   G +L  TP ++       + L +  +  +    +++ + +P  +     
Sbjct: 356 DKVAKLESITSGSLLRVTPRMIDADGVKEVLLNLNIQDGQQQASISSSEPLPEIQNSDIS 415

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T   L  G +++L G ++D   + +  IPLL  IP+LG LFRN+               F
Sbjct: 416 TQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRNTNKQSHS-----VVRLF 470

Query: 418 LVKPVAM 424
           L+K V +
Sbjct: 471 LIKAVPI 477


>gi|51594667|ref|YP_068858.1| type III secretion protein EscC/SpiA, outer membrane pore [Yersinia
           pseudotuberculosis IP 32953]
 gi|51587949|emb|CAH19552.1| possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia pseudotuberculosis IP 32953]
          Length = 523

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 15/237 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             Q+ + VTI +V    + Q+G   S + S  G   SF + F     +    FS   + D
Sbjct: 295 PIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA---KNNAEGFSTV-IGD 350

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +F   L+AL++ +  R L++P++  ++   A         + T         + +   
Sbjct: 351 TGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLD--KNVTFYTKLQGEKVAKLESVTS 408

Query: 313 GVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368
           G +L  TP ++       + L +  +  +     N+ + +P  R     T   L  G ++
Sbjct: 409 GSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQATLQVGQSL 468

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           +L G ++D   + +  IPLL  IP+LG LFR++               FL+K V + 
Sbjct: 469 LLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHS-----VVRLFLIKAVPVN 520


>gi|22124429|ref|NP_667852.1| secretin [Yersinia pestis KIM 10]
 gi|45440265|ref|NP_991804.1| type III secretion protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|150260696|ref|ZP_01917424.1| possible type III secretion protein [Yersinia pestis CA88-4125]
 gi|165926705|ref|ZP_02222537.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|167402490|ref|ZP_02307945.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|218927462|ref|YP_002345337.1| putative type III secretion protein [Yersinia pestis CO92]
 gi|229836509|ref|ZP_04456675.1| possible type III secretion protein [Yersinia pestis Pestoides A]
 gi|229840118|ref|ZP_04460277.1| possible type III secretion protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842199|ref|ZP_04462354.1| possible type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904060|ref|ZP_04519173.1| possible type III secretion protein [Yersinia pestis Nepal516]
 gi|294502332|ref|YP_003566394.1| possible type III secretion protein [Yersinia pestis Z176003]
 gi|21957215|gb|AAM84103.1|AE013653_3 putative secretin [Yersinia pestis KIM 10]
 gi|45435121|gb|AAS60681.1| possible type III secretion protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|115346073|emb|CAL18941.1| possible type III secretion protein [Yersinia pestis CO92]
 gi|149290104|gb|EDM40181.1| possible type III secretion protein [Yersinia pestis CA88-4125]
 gi|165921328|gb|EDR38552.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|167048140|gb|EDR59548.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|229679830|gb|EEO75933.1| possible type III secretion protein [Yersinia pestis Nepal516]
 gi|229690509|gb|EEO82563.1| possible type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696484|gb|EEO86531.1| possible type III secretion protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706193|gb|EEO92201.1| possible type III secretion protein [Yersinia pestis Pestoides A]
 gi|262360412|gb|ACY57133.1| possible type III secretion protein [Yersinia pestis D106004]
 gi|262364362|gb|ACY60919.1| possible type III secretion protein [Yersinia pestis D182038]
 gi|294352791|gb|ADE63132.1| possible type III secretion protein [Yersinia pestis Z176003]
 gi|320013878|gb|ADV97449.1| putative type III secretion protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 523

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 15/237 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             Q+ + VTI +V    + Q+G   S + S  G   SF + F         +     + D
Sbjct: 295 PIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA----KNNAEGFSTVIGD 350

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +F   L+AL++ +  R L++P++  ++   A         + T         + +   
Sbjct: 351 TGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLD--KNVTFYTKLQGEKVAKLESVTS 408

Query: 313 GVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368
           G +L  TP ++       + L +  +  +     N+ + +P  R     T   L  G ++
Sbjct: 409 GSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQATLQVGQSL 468

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           +L G ++D   + +  IPLL  IP+LG LFR++               FL+K V + 
Sbjct: 469 LLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHS-----VVRLFLIKAVPVN 520


>gi|156973989|ref|YP_001444896.1| hypothetical protein VIBHAR_01700 [Vibrio harveyi ATCC BAA-1116]
 gi|156525583|gb|ABU70669.1| hypothetical protein VIBHAR_01700 [Vibrio harveyi ATCC BAA-1116]
          Length = 623

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 119/321 (37%), Gaps = 28/321 (8%)

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQS 171
           ++ R ++ ++  ++         +   +     V +HG      +      +        
Sbjct: 218 VLSRVLSGVQTQIKATKESEETDINTAATTTKNVSVHGGASVEAEPGLNAIIVR------ 271

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSIT---GSSSGP 226
              Q      +K++  L+   + Q  ++V  +I ++  + L Q+G         G++S  
Sbjct: 272 -DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGIEVGNNSIL 327

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQ 283
                 D  G  V+ G   + K +LD  +       +  LE   + + ++ PTL      
Sbjct: 328 DIKTTGDVDGGDVTLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENV 387

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSE 338
            A   +      K +   T A  +    YG +L   P ++         I L +  E   
Sbjct: 388 EAVLNNSSTFYIKLIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGA 445

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            +      D+PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALF
Sbjct: 446 QIPDGGVDDVPSIRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALF 505

Query: 399 RNSRFNREETEIFIAATPFLV 419
           R++      T       P +V
Sbjct: 506 RSTTDTTRRTVRMFIIEPRIV 526


>gi|324014333|gb|EGB83552.1| bacterial type II and III secretion system protein [Escherichia
           coli MS 60-1]
          Length = 193

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 11/196 (5%)

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            G    + GG F   G+ D       L A++  +  + ++ P +   SGQ+   + G   
Sbjct: 2   LGSALSTAGGSF---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNV 58

Query: 294 LYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
            + T          +    ++  HD GV L  TP V+  G++ L I T          A 
Sbjct: 59  PFITGKVTGESAGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQAS 118

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+ +   R+  TTV++  G T++L GL+       +  +P++SKIP++G +F +   + E
Sbjct: 119 DIIT-NQRQIQTTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKADSNE 177

Query: 407 ETEIFIAATPFLVKPV 422
           +  ++I  T  +++P+
Sbjct: 178 QRIMYILLTAHIIRPL 193


>gi|166154787|ref|YP_001654905.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu]
 gi|166155662|ref|YP_001653917.1| general secretion pathway protein D [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336062|ref|ZP_07224306.1| general secretion pathway protein D [Chlamydia trachomatis L2tet1]
 gi|165930775|emb|CAP04272.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu]
 gi|165931650|emb|CAP07226.1| general secretion pathway protein D [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 760

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 122/310 (39%), Gaps = 20/310 (6%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKS 229
            + A    K ++  L++  +  V ++V + E +    ++ G      G         + S
Sbjct: 450 EKEALPKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVS 508

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           +A+    +F+ +GG    KG++  + F      L     +R  A P++  ++   A    
Sbjct: 509 WASGGILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAI 563

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAG 346
             +     VSS           YG+++   P +      G+  + ++T+++    G N  
Sbjct: 564 VEEMSI-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHA 622

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D P    R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  
Sbjct: 623 DRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDS 682

Query: 407 ETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE---- 461
           +TE+F+  TP ++  P    +        +   +   F    V      K+A E +    
Sbjct: 683 QTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTV 742

Query: 462 -GQNYKGAIG 470
            G+   G+ G
Sbjct: 743 WGEESSGSRG 752


>gi|284007632|emb|CBA73278.1| type III secretion outer membrane protein YscC,HrcC,mxiD,InvG,SsaC
           [Arsenophonus nasoniae]
          Length = 488

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 123/292 (42%), Gaps = 25/292 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK-------KVMNLLNIAGEDQVTL 198
           VL  M +T  +   A + + +F +   +N    SS+K        ++  L+IA    + +
Sbjct: 209 VLKQMNQTNANGVNAQQDTTSFAADPRQNAVVVSSNKHDMGLYSTLIKQLDIA-PTMIEV 267

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
            V+I +V      Q+G   S +    G + SF         + G D     + +  +F  
Sbjct: 268 SVSIIDVDASDFNQLGIDWSASAKIGGGTISFNQG------TSGSDNFSTVIGNTGNFMV 321

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            L+ALE+ +  + L+ P++  ++   A         + T         + +   G +L  
Sbjct: 322 RLNALEKVSKAKILSRPSVVTLNNVQAVLD--KNITFYTKLQGDKVAKLESVTAGSLLRV 379

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLL 374
           TP ++      ++ L +  E  +    +N  + +P  +  +  T   L +G +++L G +
Sbjct: 380 TPRLIDSNGRKKVMLSLNIEDGQQTKAINDSEPLPQVQNSEIATQATLNTGESLLLGGFV 439

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +D  Q ++  IPLL  +P++G LFR+   +++          FL+K   +  
Sbjct: 440 QDKDQTVQNKIPLLGDLPLIGGLFRSEDRSKQS-----VIRLFLIKAEPINQ 486


>gi|255348953|ref|ZP_05380960.1| general secretion pathway protein D [Chlamydia trachomatis 70]
 gi|255503492|ref|ZP_05381882.1| general secretion pathway protein D [Chlamydia trachomatis 70s]
          Length = 760

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   +            + ++    + V  G  +        +  S+T        + A 
Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234
              K ++  L++  +  V ++V + E +    ++ G      G         + S+A+  
Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             +F+ +GG    KG++  + F      L     +R  A P++  ++   A      +  
Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
              VSS           YG+++   P +      G+  + ++T+++    G N  D P  
Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPIINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F
Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687

Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465
           +  TP ++  P    +        +   +   F    V      K+A E +     G+  
Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747

Query: 466 KGAIG 470
            G+ G
Sbjct: 748 SGSRG 752


>gi|153947838|ref|YP_001402784.1| YscC/HrcC family type III secretion outer membrane protein
           [Yersinia pseudotuberculosis IP 31758]
 gi|170026130|ref|YP_001722635.1| YscC/HrcC family type III secretion outer membrane protein
           [Yersinia pseudotuberculosis YPIII]
 gi|186893670|ref|YP_001870782.1| YscC/HrcC family type III secretion outer membrane protein
           [Yersinia pseudotuberculosis PB1/+]
 gi|152959333|gb|ABS46794.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pseudotuberculosis IP 31758]
 gi|169752664|gb|ACA70182.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pseudotuberculosis YPIII]
 gi|186696696|gb|ACC87325.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 505

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 15/237 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             Q+ + VTI +V    + Q+G   S + S  G   SF + F         +     + D
Sbjct: 277 PIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA----KNNAEGFSTVIGD 332

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +F   L+AL++ +  R L++P++  ++   A         + T         + +   
Sbjct: 333 TGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLD--KNVTFYTKLQGEKVAKLESVTS 390

Query: 313 GVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368
           G +L  TP ++       + L +  +  +     N+ + +P  R     T   L  G ++
Sbjct: 391 GSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQATLQVGQSL 450

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           +L G ++D   + +  IPLL  IP+LG LFR++               FL+K V + 
Sbjct: 451 LLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHS-----VVRLFLIKAVPVN 502


>gi|299138919|ref|ZP_07032096.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298599073|gb|EFI55234.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 901

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 129/365 (35%), Gaps = 42/365 (11%)

Query: 93  NVGQANVILIGHDGKQ------------MLNLDILIERDIAHLEMTLRRFI-ADSNIRVE 139
               +N I +  + +                 ++  + D   + + LR  +     I + 
Sbjct: 326 KPVTSNTIFVAQNNRTKRTDLDDLAVQTFYLTNVSQQNDANEILVALRNLLDPALKIYLV 385

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
              + ++L      +  +++ +   +   ++   +      S++    L I         
Sbjct: 386 ASQNALILRATPSELILAEKLINDLDRTRAEVVVDVAVLEVSRQKERDLGITLPT----- 440

Query: 200 VTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
                    +  Q   Q+ +   SS+G + +  +       S     +  G L+  +F  
Sbjct: 441 ------SFGLTPQFSNQNVTNNNSSTGTNTNTGSGAPTTTTSSSLTLNSLGNLNATNFAV 494

Query: 259 VL-----HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---------- 303
            L     +AL      R L  P + A  GQ ++   G +    T S ++G          
Sbjct: 495 SLSGGTVNALLSDLDTRILQNPRIRATDGQHSTLKIGEKIPVATGSYNSGVSTGLANIGV 554

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVE 361
            T  T  D GV +  TPTV     + L+++ E+S     V    +  P    R A+  ++
Sbjct: 555 QTQFTYLDVGVNIDITPTVHYDHEVSLKMKVEISASNGNVTISGVTEPIITQRVAEQVIQ 614

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L  G   +LAGLL+ +  +   G P L ++P     F +    ++  EI     P +V+ 
Sbjct: 615 LKDGEPSILAGLLQQEDTKTINGTPGLGELPFFKYFFSSQDKVQQSDEIVFLIIPHIVRE 674

Query: 422 VAMRD 426
             + D
Sbjct: 675 SILTD 679


>gi|2897962|gb|AAC38377.1| EscC [Escherichia coli]
          Length = 512

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 114/262 (43%), Gaps = 29/262 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ L+I  + Q+ + V+I +V  + L+Q+G   S T ++   + +F +       + 
Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TA 315

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             + S   + +  +F   ++AL++ +  + L++P++  ++   A         + T  S 
Sbjct: 316 QVNISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346
               S+ +   G +L  TP +L      L                     ++      + 
Sbjct: 374 EKVASLRSITSGTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 433

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P  +  +  T   L +G +++L G ++D     K+GIPLLS IP++G+LF ++   + 
Sbjct: 434 TLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493

Query: 407 ETEIFIAATPFLVKPVAMRDLS 428
                     FL+K   ++  S
Sbjct: 494 S-----VVRLFLIKATPIKSAS 510


>gi|242310207|ref|ZP_04809362.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523504|gb|EEQ63370.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 502

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 123/336 (36%), Gaps = 39/336 (11%)

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
             I++E++    VL G+    Q+S   +      +S  G ++      +  +  L+   +
Sbjct: 169 ETIKLEILG---VL-GVQEDFQESYVVINKGAGLVSVRG-DKEGLERVEAYIQKLHQRLQ 223

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKF------------ 238
            QV + V I  +        G       +      P+ S  A FGG              
Sbjct: 224 QQVLIDVHILSITHTHSDTTGINWDGLYNIQNIMIPTFSEGASFGGGGEVGNVSGINIVG 283

Query: 239 --VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              S    + +       S   ++  L+    + +++ P +  ++ Q A  + G    Y+
Sbjct: 284 QNGSNALQYGINIFSQGLSLNRIIEFLKTYGKVESISNPKVLTLNNQPAMISVGDILRYQ 343

Query: 297 TVS---SSTGATSVTTHD-------YGVVLHFTPTVLSPGRIGLRIQTEVSEP------V 340
             S   ++   T++T  D        GV+L  TP +     I L+I   +++       +
Sbjct: 344 KSSIYQNTNAQTTLTNTDNEYPSIFAGVLLDITPVIFGD-EIMLKINPSITKTKENRTEI 402

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                   P+    +  + V + +   IVL GL+  +I  ++  IP+L  IP++  LF  
Sbjct: 403 PATAFESPPNLTTNQLSSIVSVKNNQKIVLGGLISKNISSIENKIPVLGSIPLIKPLFSY 462

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           S+      EI     P ++      +LS     Y +
Sbjct: 463 SQDIERTEEIVFIIEPKIISQEIQENLSLKSLGYQL 498


>gi|237804923|ref|YP_002889077.1| general secretion pathway protein D [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273223|emb|CAX10136.1| general secretion pathway protein D [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 760

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   +            + ++    + V  G  +        +  S+T        + A 
Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234
              K ++  L++  +  V ++V + E +    ++ G      G         + S+A+  
Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             +F+ +GG    KG++  + F      L     +R  A P++  ++   A      +  
Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
              VSS           YG+++   P +      G+  + ++T+++    G N  D P  
Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F
Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMGSASDSQTEMF 687

Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465
           +  TP ++  P    +        +   +   F    V      K+A E +     G+  
Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747

Query: 466 KGAIG 470
            G+ G
Sbjct: 748 SGSRG 752


>gi|117924415|ref|YP_865032.1| type II and III secretion system protein [Magnetococcus sp. MC-1]
 gi|117608171|gb|ABK43626.1| type II and III secretion system protein [Magnetococcus sp. MC-1]
          Length = 802

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 122/333 (36%), Gaps = 35/333 (10%)

Query: 141 VSDTVVLHGMVRTIQ---DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
                 L+G   +     D   A +L    +      ++     +K++         QV 
Sbjct: 199 SGSNTTLNGDRSSALHHLDQPNAGDLDRVLVFYHPDQRHEVDRLQKIIKDSIDHPAPQVY 258

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD---FSVKGVLDRF 254
           ++  + EV  + LK++G   S        S S          + GG+   F+  G     
Sbjct: 259 VEGMVLEVSDEGLKELGASLSSITRGGVNSLSLGVLSPVAVSAGGGNVFSFTRDGTNAAV 318

Query: 255 SFETV-LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSV 307
           +   + ++AL      + L+ P++  IS + A+        Y  + +ST A      +S 
Sbjct: 319 NNALIKINALVSKGEAQILSRPSILTISNRQATIQVVDVVQYPVLQNSTDAVGNTILSSY 378

Query: 308 TTHDY--GVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNA----------GDMPSYRVR 354
           +      G+ L+  P V + G  + L I   V   V   +           G  P    R
Sbjct: 379 SFEAVRPGITLNLRPRVTASGHEVNLEIDVTVESLVTANDGDVYNNSGTLLGTKPGSSSR 438

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIP----LLSKIPILGALFRNSRFNREETEI 410
           +  T   +P     ++ GL+  D +     IP    LL+ IPILGAL  ++     + E+
Sbjct: 439 RVQTFARIPDRMPFIIGGLVSTDREMTSNRIPVVGDLLADIPILGALVGSTLRQYTKREV 498

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            I  TP ++       ++      +V  D++ F
Sbjct: 499 IIVLTPHILHDDDESIVAT-----NVPKDSEFF 526


>gi|108810017|ref|YP_653933.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|108813572|ref|YP_649339.1| type III secretion protein [Yersinia pestis Nepal516]
 gi|145600961|ref|YP_001165037.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|165936434|ref|ZP_02225002.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010446|ref|ZP_02231344.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166213955|ref|ZP_02239990.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167419179|ref|ZP_02310932.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426134|ref|ZP_02317887.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167469427|ref|ZP_02334131.1| possible type III secretion protein [Yersinia pestis FV-1]
 gi|270488950|ref|ZP_06206024.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis KIM D27]
 gi|108777220|gb|ABG19739.1| type III secretion protein [Yersinia pestis Nepal516]
 gi|108781930|gb|ABG15988.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|145212657|gb|ABP42064.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|165915550|gb|EDR34159.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165990536|gb|EDR42837.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204930|gb|EDR49410.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166963173|gb|EDR59194.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167054845|gb|EDR64647.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|270337454|gb|EFA48231.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis KIM D27]
          Length = 505

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 15/237 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             Q+ + VTI +V    + Q+G   S + S  G   SF + F         +     + D
Sbjct: 277 PIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA----KNNAEGFSTVIGD 332

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +F   L+AL++ +  R L++P++  ++   A         + T         + +   
Sbjct: 333 TGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLD--KNVTFYTKLQGEKVAKLESVTS 390

Query: 313 GVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368
           G +L  TP ++       + L +  +  +     N+ + +P  R     T   L  G ++
Sbjct: 391 GSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQATLQVGQSL 450

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           +L G ++D   + +  IPLL  IP+LG LFR++               FL+K V + 
Sbjct: 451 LLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHS-----VVRLFLIKAVPVN 502


>gi|332535460|ref|ZP_08411243.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035105|gb|EGI71619.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Pseudoalteromonas haloplanktis ANT/505]
          Length = 639

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 35/287 (12%)

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------- 219
           S   R    + +  KV++ + +    QV + V + EV +  LKQ     S+         
Sbjct: 326 SNIARATLLSVAGGKVLSSIEVEDLPQVRVSVQLYEVNQRRLKQWRPDISVLSNGYEKEA 385

Query: 220 -----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                 G +   S S   +   + +      +++    +F+ + +   LE+    RTL+ 
Sbjct: 386 GLFGRDGMTERESGSATIENALQLIGGQLTNNLQLSTSQFAIDMLFSLLEQEGISRTLSR 445

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATS------------VTTHDYGVVLHFTPTV 322
           PT+T ++G+SA F  GG+    T  S +G TS                 +GV L+    V
Sbjct: 446 PTITVLAGESAVFKVGGEVPVPTSYSPSGITSGQQGSSGSVFSGTEFKSFGVELNVRAMV 505

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGL 373
               RI L +   +S P   + A          +  ++  R   T+  L  G  +++ GL
Sbjct: 506 DDKDRITLDLNPVISLPDTTLTAEIAQSTGSSLNSSAFNTRSMQTSTRLKDGQPLIIGGL 565

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  D     + +P  +   +LG L   +  +    E+ I  TP LV+
Sbjct: 566 ISTDNNASHDFVPDGNGNSMLGKLSETTSKSENNRELIIVVTPNLVR 612



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            D+  + +   T  DV V + R + +  K +G+ ++++   D K      + +  D + L
Sbjct: 51  RDISRIALGHETTLDVNVVNGRELLILAKKLGRTSMMVWYDD-KSSETFLLGVTEDYSVL 109

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL----SQSGRNQYANS 179
           E  L     D  + +      VVL G V TI     A E ++ +L    SQ+ +    ++
Sbjct: 110 ENALNDIHPDVQLTIAPDRHAVVLRGEVPTINYRHAAYEAAKNYLYASSSQASQPVITSN 169

Query: 180 SSKKVMNLL 188
            ++ + N L
Sbjct: 170 PNQGMFNSL 178


>gi|15836348|ref|NP_300872.1| general secretion protein D [Chlamydophila pneumoniae J138]
 gi|8979189|dbj|BAA99023.1| general secretion protein D [Chlamydophila pneumoniae J138]
          Length = 754

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 108/271 (39%), Gaps = 16/271 (5%)

Query: 184 VMNLLNIAGEDQVTLKVTIAE-----VRRDILKQIGFQHSITGSSSGPSKSFAADFG-GK 237
           ++  L++  +  V ++V + E      ++  L  +     +      PS S+A   G  +
Sbjct: 452 LLKKLDVP-KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILE 510

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F+ +G      G      ++     L     +R  A P++  ++   A      +     
Sbjct: 511 FLFKGS----TGSSIVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEMSI-A 565

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           VSS           YG+++   P +      G+  + ++T+++    G N  D P    R
Sbjct: 566 VSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRR 625

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
                V +  G T+++ GL    +    +GIP L  IP +G LF  S  +   TE+F+  
Sbjct: 626 NITNKVRIADGETVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFI 685

Query: 415 TPFLVK-PVAMRDLSRPDDHYSVEDDAKAFF 444
           TP +++ PV  ++        S   + + ++
Sbjct: 686 TPKILENPVEQQERKEEALLSSRPGEREEYY 716


>gi|15618724|ref|NP_225010.1| general secretion protein D [Chlamydophila pneumoniae CWL029]
 gi|16752225|ref|NP_445593.1| general secretion pathway protein D [Chlamydophila pneumoniae AR39]
 gi|33242175|ref|NP_877116.1| general secretion pathway protein D precursor [Chlamydophila
           pneumoniae TW-183]
 gi|4377127|gb|AAD18953.1| General Secretion Protein D [Chlamydophila pneumoniae CWL029]
 gi|7189969|gb|AAF38829.1| general secretion pathway protein D [Chlamydophila pneumoniae AR39]
 gi|33236686|gb|AAP98773.1| general secretion pathway protein D precursor [Chlamydophila
           pneumoniae TW-183]
          Length = 754

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 108/271 (39%), Gaps = 16/271 (5%)

Query: 184 VMNLLNIAGEDQVTLKVTIAE-----VRRDILKQIGFQHSITGSSSGPSKSFAADFG-GK 237
           ++  L++  +  V ++V + E      ++  L  +     +      PS S+A   G  +
Sbjct: 452 LLKKLDVP-KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILE 510

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F+ +G      G      ++     L     +R  A P++  ++   A      +     
Sbjct: 511 FLFKGS----TGSSIVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEMSI-A 565

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           VSS           YG+++   P +      G+  + ++T+++    G N  D P    R
Sbjct: 566 VSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRR 625

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
                V +  G T+++ GL    +    +GIP L  IP +G LF  S  +   TE+F+  
Sbjct: 626 NITNKVRIADGETVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFI 685

Query: 415 TPFLVK-PVAMRDLSRPDDHYSVEDDAKAFF 444
           TP +++ PV  ++        S   + + ++
Sbjct: 686 TPKILENPVEQQERKEEALLSSRPGEREEYY 716


>gi|217076176|ref|YP_002333892.1| bacterial type II and III secretion system protein [Thermosipho
            africanus TCF52B]
 gi|217036029|gb|ACJ74551.1| bacterial type II and III secretion system protein [Thermosipho
            africanus TCF52B]
          Length = 1318

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 38/257 (14%)

Query: 198  LKVTIAEVRRDILKQI-----------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
            +   +AE  R  +KQ                 ++ +         +D G        DF+
Sbjct: 1066 IDAKVAEEVRSYIKQNLNAKLALIEVKVVDEELSDNFEYNLGKITSDLG---TLSNDDFN 1122

Query: 247  VKGVLDRFSFETVLHALERAT--------------------AIRTLAEPTLTAISGQSAS 286
            VK  L   S E +++ L                            LA P + A SG++AS
Sbjct: 1123 VKLSLSNLSIEGIINKLLSIGSDGNSSLNIEIGNGNNVTNKNTNVLASPNVVAKSGETAS 1182

Query: 287  FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGV 343
               G +     +S++     +   + GV L  TP + +   I L +  +VS     +   
Sbjct: 1183 ILIGDKIPI-VLSTAENTQEIKYIESGVTLEITPYINADNTIDLELNIKVSSFDWDLKSQ 1241

Query: 344  NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
             +  +P  R R+  + + L    T+V+ GL +++  +    IP+L  +PI+G  F + + 
Sbjct: 1242 YSLSLPVERTREFSSKILLKENQTLVIGGLSREENSKTVSKIPILGDLPIIGKFFVSEKS 1301

Query: 404  NREETEIFIAATPFLVK 420
            ++ +  I I  +  +VK
Sbjct: 1302 DKVKRNIVIFISAKVVK 1318


>gi|206889986|ref|YP_002248061.1| type II protein secretion protein-like protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741924|gb|ACI20981.1| type II protein secretion protein-like protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 538

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 107/269 (39%), Gaps = 32/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------TGSSSGPSKSFAA 232
           ++ +  +      QV ++  + EV      + G   S          T S  G +  F  
Sbjct: 269 QEYLETVKKVMSRQVLIEAKVIEVALSKSLKYGIDWSFLREWTHGTHTWSIGGATSGFTN 328

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
             G         FS+     +  F +++ AL     +RTL+ P ++ ++GQ++ FT G  
Sbjct: 329 VIGSGDPYSKIQFSLTTTAIK-EFSSLIKALGEFGDVRTLSNPRVSIMNGQTSLFTVGRN 387

Query: 293 HLYKTVSSSTGATSVTTHDY------------GVVLHFTPTVLSPGRIGLRIQTEVSE-- 338
           + + + + S   TS T                G+++   P +   G I L I   VS   
Sbjct: 388 YSFISKAQSNVTTSGTGSPIITYTVETSNLLSGLIIGIVPYIDEKGEISLTITPIVSNLI 447

Query: 339 --------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
                            +P   +R+  TTV++  G  I++ G++K +    +  +PLL  
Sbjct: 448 EMRSATFGSSGAETTIQLPRVDLRELSTTVKVKDGEIIIIGGMIKKEESFSENKMPLLGD 507

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP++G LF++       TE+ I   P ++
Sbjct: 508 IPVVGELFKSKDKEETNTELVILLQPRII 536


>gi|77919277|ref|YP_357092.1| type II secretory pathway, component HofQ [Pelobacter carbinolicus
           DSM 2380]
 gi|77545360|gb|ABA88922.1| type II secretory pathway, component HofQ [Pelobacter carbinolicus
           DSM 2380]
          Length = 767

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 114/326 (34%), Gaps = 49/326 (15%)

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           LR  +    I V    + +V+        D    +EL+   L  S RN            
Sbjct: 290 LRTILQTRKIYVHDELNAIVMR-------DKPEVIELARQILEASDRND----------- 331

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                   +V   + + EV    L  IG + S    S+G  ++     G    +   D  
Sbjct: 332 -------SEVVFDLELVEVSHRDLLDIGPKLSSYSISAGMGRTILDTDGNVVTNLVSDTL 384

Query: 247 VKGVLDRFSF-------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             G                           +       LA P +   + + A    G + 
Sbjct: 385 AAGGTTDTLVRSFSRLESFYTLPTATFDFAKTLIDSEILANPKIRVKNREKAKVHIGTKE 444

Query: 294 LYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNA 345
              T + ST       T+V   D GV L   P +     I  ++  EVS  +        
Sbjct: 445 PIVTTNISTTTGDVTSTNVQYIDVGVKLDVEPNIQLDDTIVTKLTLEVSSILEKEEIAGG 504

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           G         A +++ L  G   ++ GL+++D+   ++ +P +  IPI+G LF      +
Sbjct: 505 GSALRISTTNAGSSLILKDGERTIIGGLIRNDLSDTRDTLPFIGSIPIIGHLFTGRSKEK 564

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPD 431
            ++EI ++ TP +V+ V   D+ RPD
Sbjct: 565 NKSEILLSITPHIVRSV---DMPRPD 587


>gi|307247528|ref|ZP_07529573.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856031|gb|EFM88189.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 204

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 5/179 (2%)

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             + LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V    R
Sbjct: 4   NGKILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDR 62

Query: 328 IGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +   VS         +  +P +  R++ +T E+ +G + +++GLL     +  + +
Sbjct: 63  IRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKV 122

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV    +  P   +      + FF
Sbjct: 123 PVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFF 179


>gi|295111311|emb|CBL28061.1| Type II secretory pathway, component PulD [Synergistetes bacterium
           SGP1]
          Length = 193

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 3/168 (1%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F+    ALE     + LA P++  I G  A       + Y +     G  + +T   G  
Sbjct: 8   FDGAFRALEERGKGKALASPSVITIDGMEARVELTQDYPYISERDDAGNPTWSTQTVGPQ 67

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           +  TP V   G I L +  E  E +    G     MP    R   T V +  G   V+ G
Sbjct: 68  MTMTPRVGRDGVINLALDLETGEVIQMITGSTGEQMPRTSKRHVTTNVRVRDGEPFVIGG 127

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L  D+  + +  IP+L ++P+LG LF   +    +T++ +   P+++ 
Sbjct: 128 LFSDNKSRTRNRIPILGQLPLLGELFTYRQDEHRKTQVVMLVVPYVLD 175


>gi|253988518|ref|YP_003039874.1| type III secretion outer membrane protein pscc [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211637900|emb|CAR66529.1| type iii secretion outer membrane protein pscc [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779968|emb|CAQ83129.1| type iii secretion outer membrane protein pscc [Photorhabdus
           asymbiotica]
          Length = 618

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 118/324 (36%), Gaps = 23/324 (7%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +   L R ++D+N+   +  +     G   + +   +A       + +    + +  + 
Sbjct: 214 GIATVLSRLLSDANVT-TVTGEMSSSTGGNHSSRAVIQAEPSLNAIIVRDNPERMSMYTH 272

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------- 234
             ++N L+      + + ++I ++  D L ++G    + G ++GP               
Sbjct: 273 --LINALDKPSAR-IEVALSIVDINADNLSELGVDWQV-GINTGPRHIIDITTSAREKEK 328

Query: 235 --GGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              G      G  ++  ++DR   +     +  LE   + + ++ PTL       A    
Sbjct: 329 EKNGGKGESIGSTALGSLVDRRGLDYLLAKITLLESKGSAQVVSRPTLLTQENTQAVIDH 388

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNA- 345
              +  K          + +  YG +L  TP V+  G    I L +  E        +  
Sbjct: 389 NETYYVKVEGERV--AELKSLTYGTMLRMTPRVIKIGDTPEISLNLHIEDGNQKPNSSGL 446

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           G +P+      DT   +  G ++++ G+ +D++ +    +P L  IP LG LFR +    
Sbjct: 447 GGIPTINRTIVDTVARVGHGQSLLIGGIYRDEMSETVRKVPFLGDIPYLGVLFRTTTEQV 506

Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
             +       P L+       L+ 
Sbjct: 507 RRSVRLFIIEPRLIDSGVANYLAL 530


>gi|260775643|ref|ZP_05884539.1| type III secretion system outer membrane pore YscC [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608059|gb|EEX34228.1| type III secretion system outer membrane pore YscC [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 686

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 131/410 (31%), Gaps = 34/410 (8%)

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
           +  D  V       +     G  ++I  L+  D    LN    +E      +  + R   
Sbjct: 194 SVTDREVRYRNEHIVI---PGVTSLIKELLSQDRNPALN---EVEHLYNLNQERILRQTQ 247

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS-SKKVMNLLNIA 191
                 +M     ++ G      +S   V       S    +  A  S  ++++  L+  
Sbjct: 248 SIEGGDQMDISPYIMGGSRAPETNSVNNVSADVRSNSVLIYDDLAKRSMYQRLIEKLDKP 307

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
               V +   I ++ R  L QIG       +            G      G   +   + 
Sbjct: 308 -SRMVEIDAIILDIERKQLSQIGVNWGYQKNDF--------SLGSMMPQGGVQTATLFIQ 358

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D+  F   L ALE       LA P++  ++ Q A   S      +T         V    
Sbjct: 359 DKGRFYAELQALEMKGKATVLANPSVLTMANQPAVIDSSETAFIQTEGERV--VDVREVT 416

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
            G  L   P +L+ G    I L +  E    +      + PS       T   +    ++
Sbjct: 417 AGTGLQVVPRILTGGGKTTIQLNVDIE-DGNIFEEEDKETPSVNRSTISTQALVTPEQSL 475

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           V  G    +  +    +P+L  IP+LG+LF+  +  R +       TP ++     +D+ 
Sbjct: 476 VFGGFNVSENTRSTSKVPVLGDIPLLGSLFQVQKEARTKRVRLFILTPRILDSSMTQDVK 535

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI------GFI 472
                Y   D+ +    N   +I   +   +   +   G        G+I
Sbjct: 536 ----DYVQFDEDRDVVANAQEEIKRRRHGKQEALKVDVGDALRSLIKGYI 581


>gi|269302606|gb|ACZ32706.1| putative general secretion pathway protein D [Chlamydophila
           pneumoniae LPCoLN]
          Length = 754

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 118/309 (38%), Gaps = 30/309 (9%)

Query: 184 VMNLLNIAGEDQVTLKVTIAE-----VRRDILKQIGFQHSITGSSSGPSKSFAADFG-GK 237
           ++  L++  +  V ++V + E      ++  L  +     +      PS S+A   G  +
Sbjct: 452 LLKKLDVP-KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILE 510

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F+ +G      G      ++     L     +R  A P++  ++   A      +     
Sbjct: 511 FLFKGS----TGSSIVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEMSI-A 565

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           VSS           YG+++   P +      G+  + ++T+++    G N  D P    R
Sbjct: 566 VSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRR 625

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
                V +  G T+++ GL    +    +GIP L  IP +G LF  S  +   TE+F+  
Sbjct: 626 NITNKVRIADGETVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFI 685

Query: 415 TPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA--------------SE 459
           TP +++ PV  ++        S   + + ++          + A              S+
Sbjct: 686 TPKILENPVEQQERKEEALLSSRPGEREEYYQALAASEAAARAAHKKLEVFPASGVSLSQ 745

Query: 460 VEGQNYKGA 468
           VEGQ Y G 
Sbjct: 746 VEGQEYDGC 754


>gi|83645990|ref|YP_434425.1| putative type III secretion protein YscC [Hahella chejuensis KCTC
           2396]
 gi|83634033|gb|ABC30000.1| putative type III secretion protein YscC [Hahella chejuensis KCTC
           2396]
          Length = 573

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 122/357 (34%), Gaps = 43/357 (12%)

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM------------VSDTVVLHGM 150
                 +    I +    + L+  L R I++  +                V        +
Sbjct: 190 DDRSMVVGGQRIAVPGVASSLQAILGRRISEPTVSAIAPKTLPKLKGQGLVQGRYGPTEI 249

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---------------NLLNIAGED- 194
             + + ++  V +       +        +++++                NL++   +  
Sbjct: 250 TPSQETNREIVSVRSEEGGVNSETAGYIIANERLNAVIVHDRQSKMPLYQNLIDTLDQPR 309

Query: 195 -QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------FAADFGGKFVSEGGDF 245
            QV ++V+I +V  D L ++GF+  I G +   + +         + +     V +G +F
Sbjct: 310 SQVEIEVSIIDVSTDRLNEMGFEWRINGRNGSFTNADFSQGALPRSPNELSFVVGDGANF 369

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           S      +  F + + AL        L++PT+  +    A          + V       
Sbjct: 370 STLLTNTQDLFLSRIRALSEDGDASVLSQPTILTLDNIEAVLDHSTTFFVRLVGDR--EV 427

Query: 306 SVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
            +     G V+  TP ++      +I L I  E      G    D+P+       T   +
Sbjct: 428 DLFPVSVGSVVRVTPHIVKGDLSDKIHLNINIE-DGQQTGQAVDDIPAVSKSIITTEALV 486

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              G++++ G   +     +  IP+L  IP+LG LFR      ++       +P +V
Sbjct: 487 NDNGSLLVGGYYFNQDSTNRSKIPVLGDIPLLGRLFRTDGSQLQKRARLFLISPRIV 543


>gi|242316560|ref|ZP_04815576.1| general secretion pathway protein D [Burkholderia pseudomallei
           1106b]
 gi|242139799|gb|EES26201.1| general secretion pathway protein D [Burkholderia pseudomallei
           1106b]
          Length = 235

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 19/182 (10%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           + GQ+    +G      + +++    +    D G+ LH  P +   G + L++ TE S  
Sbjct: 1   MVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAV 60

Query: 340 VIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           V G N        P++  R   +TV   +G  IVL GL++D+ Q     +PLL  IP +G
Sbjct: 61  VPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIG 120

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
            LFR+    R++T + +   P ++                  + A+A   NR + I G  
Sbjct: 121 QLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTSNRYDYIQGVT 165

Query: 456 EA 457
            A
Sbjct: 166 GA 167


>gi|153832481|ref|ZP_01985148.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           harveyi HY01]
 gi|148871276|gb|EDL70148.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           harveyi HY01]
          Length = 623

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 117/321 (36%), Gaps = 28/321 (8%)

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQS 171
           ++ R ++ ++  ++         +   +     V +HG      +      +        
Sbjct: 218 VLSRVLSGVQTQIKATKESEETDINAAATTTKNVSVHGGASVEAEPGLNAIIVR------ 271

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSK- 228
              Q      +K++  L+   + Q  ++V  +I ++  + L Q+G         +  S  
Sbjct: 272 -DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGIEVANNSIL 327

Query: 229 --SFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQ 283
                 D  G  V+ G   + K +LD  +       +  LE   + + ++ PTL      
Sbjct: 328 DIKTTGDVDGGDVTLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENV 387

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSE 338
            A   +      K +   T A  +    YG +L   P ++         I L +  E   
Sbjct: 388 EAVLNNSSTFYVKLIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGA 445

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            +      D+PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALF
Sbjct: 446 QIPDGGVDDVPSIRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALF 505

Query: 399 RNSRFNREETEIFIAATPFLV 419
           R++      T       P +V
Sbjct: 506 RSTTDTTRRTVRMFIIEPRIV 526


>gi|15835475|ref|NP_297234.1| general secretion pathway protein D [Chlamydia muridarum Nigg]
 gi|270285655|ref|ZP_06195049.1| general secretion pathway protein D [Chlamydia muridarum Nigg]
 gi|270289664|ref|ZP_06195966.1| general secretion pathway protein D [Chlamydia muridarum Weiss]
 gi|301337051|ref|ZP_07225253.1| general secretion pathway protein D [Chlamydia muridarum MopnTet14]
 gi|7190887|gb|AAF39657.1| general secretion pathway protein D [Chlamydia muridarum Nigg]
          Length = 759

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 118/294 (40%), Gaps = 15/294 (5%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKS 229
            + A    K ++  L++  +  V ++V + E +    ++ G      G         + S
Sbjct: 449 EKEALPKIKMLLKKLDVP-KKMVRIEVLLFERKLSSQRKSGLNLLRLGEEVCKQGTQAVS 507

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           +A     +F+ +GG    KG++  + F      L     +R  A P++  ++   A    
Sbjct: 508 WANGGILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAI 562

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAG 346
             +     VSS           YG+++   P +      G+  + ++T+++    G N  
Sbjct: 563 VEEMSI-AVSSEKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGKNQA 621

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D P    R     V +  G T+++ GL  +     ++GIP L ++P +G LF     +  
Sbjct: 622 DRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDATSDS 681

Query: 407 ETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           +TE+F+  TP ++  PV   +        S   + + F    V+     K+A E
Sbjct: 682 QTEMFMFITPKILDNPVEEEEKLECAFLASRPGENEDFLRAVVSGQQAAKQAME 735


>gi|269963152|ref|ZP_06177487.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832116|gb|EEZ86240.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 623

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 121/320 (37%), Gaps = 26/320 (8%)

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ--SG 172
           ++ R ++ ++  ++         +   + T       + +     A   +E  L+     
Sbjct: 218 VLSRVLSGVQTQIKATKESEETDINTAATTT------KNVSVHAGASVEAEPGLNAIIVR 271

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSIT---GSSSGPS 227
             Q      +K++  L+   + Q  ++V  +I ++  + L Q+G         G++S   
Sbjct: 272 DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGIEVGNNSILD 328

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284
                D  G  V+ G   + K +LD  +       +  LE   + + ++ PTL       
Sbjct: 329 IKTTGDVDGGDVTLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVE 388

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339
           A   +      K +   T A  +    YG +L   P ++         I L +  E    
Sbjct: 389 AVLNNSSTFYVKLIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQ 446

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +      D+PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR
Sbjct: 447 IPDGGVDDVPSIRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 506

Query: 400 NSRFNREETEIFIAATPFLV 419
           ++      T       P +V
Sbjct: 507 STTDTTRRTVRMFIIEPRIV 526


>gi|117924235|ref|YP_864852.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
 gi|117607991|gb|ABK43446.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
          Length = 574

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 116/315 (36%), Gaps = 42/315 (13%)

Query: 146 VLHGMVRTIQDSQRAVELSETF--LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           ++  ++ +     +A  L+     L    R     + +K V     + G  QV ++  + 
Sbjct: 261 IIQNLISSQGTEGQAYSLNRMTGTLHLKARPSVVRTVTKLVDQFKEVIG-RQVLIETRVM 319

Query: 204 EVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV--------- 250
           E+  +   + G        S     G S ++    G         F +  +         
Sbjct: 320 EITLNETYRTGVDWWAFKGSIAAMMGQSGTYTGRIGSTNALSSNTFGLADISYPTTTTAA 379

Query: 251 ------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----- 299
                 +   +   ++  L++   ++ L+ PT+ A  GQ +  + G  + Y + S     
Sbjct: 380 TGLGLVISGANGAAIVDLLKQFGDVQVLSNPTIRARHGQPSMISVGTSNTYVSESEITTT 439

Query: 300 ------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---------GVN 344
                 ++     V T   G+++  TP +   GR+ + +    S+            G N
Sbjct: 440 GTGTTATTQADVVVNTVFDGLMIGVTPFIKEDGRVVMTVHPIKSDVTASSLDLVSVGGTN 499

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P   +++  T +E  SG  + L GL+  +    K G+PLL  IP+LG LF     +
Sbjct: 500 QVALPEVELKEMSTILETHSGDLVFLGGLIDKEKSATKTGMPLLGDIPLLGRLFSTDSSS 559

Query: 405 REETEIFIAATPFLV 419
            +  E+ I     ++
Sbjct: 560 DKTREMIIMLRVSVL 574


>gi|238752349|ref|ZP_04613827.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia rohdei ATCC 43380]
 gi|238709390|gb|EEQ01630.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia rohdei ATCC 43380]
          Length = 486

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 111/296 (37%), Gaps = 21/296 (7%)

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVT 197
              + + L G              S      +   +   ++     +L++   +   Q+ 
Sbjct: 203 SAGNNLPLAGTEGQEDAHINMPLFSADPRQNAVIIRDRQANMPLYSSLISQLDQRPVQIE 262

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           + VTI +V    + Q+G   S + S  G   SF             D     + D  +F 
Sbjct: 263 ISVTIIDVDAGDISQLGIDWSASTSIGGMGISFNRGLA----KGNSDGFSTVIGDTGNFM 318

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
             L+AL++ +  R L+ P++  ++   A         + T         + +   G +L 
Sbjct: 319 VRLNALQKNSRARVLSRPSVVTLNNIQAVLD--KNVTFYTKLQGDKVAKLESVTSGSLLR 376

Query: 318 FTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            TP ++    +      L IQ    +  + +++  +P  +     T   L  G +++L G
Sbjct: 377 VTPRMIDADGVKEVLLNLNIQDGQQQVSL-ISSEPLPQIQNSDISTQATLRVGQSLLLGG 435

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK--PVAMRD 426
            ++D   + +  IPLL  IP+LG LFR++               FL+K  PV  R+
Sbjct: 436 FIQDKQIESQNKIPLLGDIPLLGGLFRSTEKQSHS-----VVRLFLIKAVPVDARE 486


>gi|120609177|ref|YP_968855.1| YscC/HrcC family type III secretion outer membrane protein
           [Acidovorax citrulli AAC00-1]
 gi|58700619|gb|AAW81010.1| HrcC [Acidovorax citrulli]
 gi|120587641|gb|ABM31081.1| type III secretion outer membrane pore, YscC/HrcC family
           [Acidovorax citrulli AAC00-1]
          Length = 683

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 110/295 (37%), Gaps = 18/295 (6%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS-------KKVMNLLNIAGEDQVTLKVTIAE 204
            T   + +A E    F +  G N              + ++  L+      V L+ TI E
Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLD-QKPQLVELEATIIE 456

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V  D +  +G   S+   +S  S +          S     S   +         ++ALE
Sbjct: 457 VNSDSVDALGVNWSLRAGTSSISTNLPG------PSTPAALSTIVLDAGRHLLANVNALE 510

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                R L++P++  ++ ++A      +     V+ +  A      + G +L  TP V  
Sbjct: 511 AQGKARILSKPSVLGVANRAAVMRE-KRVATVRVAGNLEANLFQ-IEAGTLLQMTPQVTP 568

Query: 325 -PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             G+  +++   + +     N  D +P  +  +  T   +  G ++++ G+  +      
Sbjct: 569 VDGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQD 628

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +P LSK+P++G +FRN+      TE     TP ++   A   +S         
Sbjct: 629 NAVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVIAQDAPTTVSSISPEVRKP 683


>gi|332159936|ref|YP_004296513.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607512|emb|CBY29010.1| secretion system apparatus SsaC [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664166|gb|ADZ40810.1| Type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 493

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 111/292 (38%), Gaps = 17/292 (5%)

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVT 197
              + + L G   +      A   S      +   +   ++     +L+    +   Q+ 
Sbjct: 210 SAGNHLPLAGEKESEDAPVSAPLFSADPRQNAVIIRDRQANMPLYSSLITQLDQRPVQIE 269

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           + VTI +V    + Q+G   S + S  G   SF +           D     + +  +F 
Sbjct: 270 ISVTIIDVDAGDISQLGIDWSASTSIGGAGVSFNSGEAAPH----SDGFSTVIGNTGNFM 325

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
             L+AL++ +  R L+ P++  ++   A         + T         + +   G +L 
Sbjct: 326 VRLNALQKNSRARVLSRPSVVTLNNIQAVLD--KNVTFYTKLQGDKVAKLESITSGSLLR 383

Query: 318 FTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGL 373
            TP ++       + L +  +  +    +++ + +P  +     T   L  G +++L G 
Sbjct: 384 VTPRMIDSDGVKEVLLNLNIQDGQQQAPLSSSEPLPEIQNSDISTQATLRVGQSLLLGGF 443

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ++D   + +  IPLL  IP+LG LFR++               FL+K V + 
Sbjct: 444 IQDKQIESQNKIPLLGDIPLLGGLFRSTNKQSHS-----VVRLFLIKAVPVN 490


>gi|37527640|ref|NP_930984.1| Type III secretion component protein SctC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787075|emb|CAE16150.1| Type III secretion component protein SctC [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 614

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 121/319 (37%), Gaps = 32/319 (10%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ----RAVELSETFLSQ--SGRNQ 175
            +   L R ++D+N+          + G   +    +    RAV  +E  L+      N 
Sbjct: 211 GIATILSRLLSDTNVTA--------VTGEASSPSMGESYSSRAVVQAEPSLNAIIVRDNP 262

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
              S    ++N L+      + + ++I ++  + L ++G    + G ++GP         
Sbjct: 263 ERMSMYAHLINALDKPSAR-IEVALSIVDIDANNLSELGVDWQV-GINTGPRHIIDITTS 320

Query: 236 GKFVS-------EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSA 285
            +  +         G  ++  ++DR   +     +  LE   + + ++ PTL       A
Sbjct: 321 AREKTEIKEKGESIGSAALGSLVDRRGLDYLLAKITLLESKGSAQVISRPTLLTQENTQA 380

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIG 342
              +   +  K   +      + +  YG +L   P V+  G    I L +  E       
Sbjct: 381 VIDNNETYYVKV--NGERVAELKSLTYGTMLRMIPRVIQVGDSSEISLDLHIEDGNQKPN 438

Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +  D +P+      DT   +  G ++++ G+ +D++ Q+   +P L  IP LG LFRN+
Sbjct: 439 SSGQDGIPTISRTVVDTVARVGHGQSLLIGGIYRDEMSQITRKVPFLGDIPYLGVLFRNT 498

Query: 402 RFNREETEIFIAATPFLVK 420
                 +       P L+ 
Sbjct: 499 SEQVRRSVRLFIIEPRLID 517


>gi|254455430|ref|ZP_05068859.1| type II Secretion PilQ [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082432|gb|EDZ59858.1| type II Secretion PilQ [Candidatus Pelagibacter sp. HTCC7211]
          Length = 516

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 111/263 (42%), Gaps = 30/263 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------------TGSSSGPS 227
            KV+N ++I  E QV ++  + +   +  KQ+G +                 + SS+G  
Sbjct: 260 DKVLNEIDIKTE-QVLIEAFVVKATSEFEKQLGTRLGGYYKRNDEQIGGIVGSTSSAGTL 318

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFS---------FETVLHALERATAIRTLAEPTLT 278
              +A        +  +F+  G                +  + ALE+   + T++ P + 
Sbjct: 319 DDTSAALAQVAKDQITNFAATGATSGIGILKKTGSAVLKAEITALEKMGMVETISNPKVF 378

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            I+ Q AS T G +  Y+T S  T +T  +  +  + L  TP+++  G + L IQ    +
Sbjct: 379 TINNQPASVTQGKEIPYETTSEGTTST--SFKEAALKLQVTPSIIGDGNVLLDIQVNNDD 436

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-LLSKIPILGAL 397
                 + D P     +  T + +  G  +V+ G+  ++I + KE +P  L  +P++G L
Sbjct: 437 AD---TSQDEPPITKMEIITKLLVADGDIVVIGGIKSNNISKAKEQVPGGLGNVPVIGNL 493

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
            +  +   +  E+ I   P ++ 
Sbjct: 494 LKYKKKEDKLEELLIFIAPRVLD 516


>gi|238787451|ref|ZP_04631249.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia frederiksenii ATCC 33641]
 gi|238724238|gb|EEQ15880.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia frederiksenii ATCC 33641]
          Length = 481

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 100/237 (42%), Gaps = 15/237 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             Q+ + VTI +V    + Q+G   S + S  G   SF +   G   S    FS   + D
Sbjct: 253 PVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNS---GNAKSNADGFSTV-IGD 308

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +F   L+AL++ +  R L+ P++  ++   A         + T         + +   
Sbjct: 309 TGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLD--KNVTFYTKLQGDKVAKLESVTS 366

Query: 313 GVVLHFTPT-VLSPG--RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368
           G +L  TP  + S G   + L +  +  +    +++ + +P  +     T   L  G ++
Sbjct: 367 GSLLRVTPRMINSDGVKEVMLNLNIQDGQQQAPISSSEPLPEIQNSDISTQATLRVGQSL 426

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           +L G ++D   + +  IPLL  IP+LG LFR++               FL+K V + 
Sbjct: 427 LLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTEKQSHS-----VVRLFLIKAVPVN 478


>gi|163802024|ref|ZP_02195920.1| putative type III secretion protein YscC [Vibrio sp. AND4]
 gi|159174165|gb|EDP58973.1| putative type III secretion protein YscC [Vibrio sp. AND4]
          Length = 623

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 15/241 (6%)

Query: 192 GEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGKFVSEGGDFS 246
            + Q  ++V  +I ++  + L Q+G        +   S        D  G  V+ G   +
Sbjct: 288 DQPQSRIEVALSIVDISANDLSQLGIDWRAGIGAGNNSVLDIKTTGDVAGGDVTLGSGQT 347

Query: 247 VKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            K +LD  +       +  LE   + + ++ PTL       A   +      K +   T 
Sbjct: 348 FKSLLDVTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLIGKETA 407

Query: 304 ATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           A  +    YG +L   P ++         I L +  E    +      D+PS R  +  T
Sbjct: 408 A--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSIRKTEIST 465

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +  G ++++ G+ +D+I      +PLL  IP LGALFR++      T       P +
Sbjct: 466 LATVKQGQSLLIGGVYRDEISHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRMFIIEPRI 525

Query: 419 V 419
           V
Sbjct: 526 V 526


>gi|33593235|ref|NP_880879.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|29603239|emb|CAC79584.1| bscC [Bordetella pertussis Tohama I]
 gi|33563610|emb|CAE42511.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|332382644|gb|AEE67491.1| putative type III secretion protein [Bordetella pertussis CS]
          Length = 600

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 86/246 (34%), Gaps = 11/246 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVS 240
           + ++  L++     + ++  I +V  D++ ++G       G++S          G     
Sbjct: 287 RALIEQLDVPSTL-IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPV 345

Query: 241 EGGDFSVK----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +G    +     G+         L ALE       L++P++       A          +
Sbjct: 346 DGAAADLAPGTLGISVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIR 405

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
           T+       +VT    G  L  TP  ++     ++ L I  E    +       +P  R 
Sbjct: 406 TLGERV--ATVTPVTVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRK 463

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
               T   +    T+++ G      ++  E +PLL  IP LG LF +     +  E    
Sbjct: 464 SSISTLAVVGDEQTLLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFL 523

Query: 414 ATPFLV 419
             P +V
Sbjct: 524 IRPRVV 529


>gi|33596848|ref|NP_884491.1| putative type III secretion protein [Bordetella parapertussis
           12822]
 gi|33573549|emb|CAE37540.1| putative type III secretion protein [Bordetella parapertussis]
          Length = 600

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 85/246 (34%), Gaps = 11/246 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVS 240
           + ++  L++     + ++  I +V  D++ ++G       G++S          G     
Sbjct: 287 RALIEQLDVPSTL-IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPV 345

Query: 241 EGGDF----SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +G          G+         L ALE       L++P++       A          +
Sbjct: 346 DGAAAELAPGTLGISVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIR 405

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
           T+       +VT    G  L  TP  ++     ++ L I  E    +       +P  R 
Sbjct: 406 TLGERV--ATVTPVTVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRK 463

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
               T   +    T+++ G      ++  E +PLL  IP LG LF +     +  E    
Sbjct: 464 SSISTLAVVGDEQTLLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFL 523

Query: 414 ATPFLV 419
             P +V
Sbjct: 524 IRPRVV 529


>gi|33599773|ref|NP_887333.1| putative type II secretion system protein [Bordetella
           bronchiseptica RB50]
 gi|33567370|emb|CAE31283.1| putative type II secretion system protein [Bordetella
           bronchiseptica RB50]
          Length = 545

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 98/281 (34%), Gaps = 41/281 (14%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------- 232
           + ++++         Q+ ++  + ++  +   + G   ++  +         A       
Sbjct: 265 AVEELIRRNQATIRRQIQVEAQLIDIELNDGFEFGVDWNLLTNHLSGRYGSGAITANTPA 324

Query: 233 -------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                        +   + +               SF   L+AL    +++ L+ PT+  
Sbjct: 325 GTQPGSGLLPRSINIPAQVIGSAAGVGGGIGFANDSFSVALNALRSFGSVKVLSNPTVRV 384

Query: 280 ISGQSASFTSGGQHLYKTVSSST------------GATSVTTHDYGVVLHFTPTVLSPGR 327
            +G  A  + G    Y T  S+T                  +   GVV+   P +   GR
Sbjct: 385 RNGVPAYLSVGANVRYVTEISTTFNNIGGGSSNSSSDVQTDSLFSGVVVGVAPFIHEDGR 444

Query: 328 IGLRIQTEVSEP---------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           + L +    ++          V   N+  +P    +   TT+ L +G T+VL GL+    
Sbjct: 445 VELFVHPMQTQVQPQSLALVDVGNGNSVTLPIINTKSITTTLNLNNGDTVVLGGLIDQQF 504

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
               +G+P LS IP  G LF N   + +  E+ I     ++
Sbjct: 505 TNANKGLPGLSDIPGAGVLFDNRSDSHKSRELVIILRVRVI 545


>gi|33600622|ref|NP_888182.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
 gi|33568221|emb|CAE32134.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
          Length = 600

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 85/246 (34%), Gaps = 11/246 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVS 240
           + ++  L++     + ++  I +V  D++ ++G       G++S          G     
Sbjct: 287 RALIEQLDVPSTL-IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPV 345

Query: 241 EGGDF----SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +G          G+         L ALE       L++P++       A          +
Sbjct: 346 DGAAAELAPGTLGISVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIR 405

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
           T+       +VT    G  L  TP  ++     ++ L I  E    +       +P  R 
Sbjct: 406 TLGERV--ATVTPVTVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRK 463

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
               T   +    T+++ G      ++  E +PLL  IP LG LF +     +  E    
Sbjct: 464 SSISTLAVVGDEQTLLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFL 523

Query: 414 ATPFLV 419
             P +V
Sbjct: 524 IRPRVV 529


>gi|255619353|ref|XP_002540016.1| General secretion pathway protein D precursor, putative [Ricinus
           communis]
 gi|223500090|gb|EEF22367.1| General secretion pathway protein D precursor, putative [Ricinus
           communis]
          Length = 304

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 90/255 (35%), Gaps = 40/255 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------SITGSSSGPS 227
           + V++ L++    QV ++  + EV      + G Q                +   S G S
Sbjct: 50  RAVIDQLDVR-RAQVYIEALVVEVTSTDASEFGVQWVGLTGNNNSSYRVGGLQSFSLGGS 108

Query: 228 KSFAADFGGKFVSEGGDFS------------------VKGVLDRFSFETVLHALERATAI 269
            +   +      +                         K V        + HALE     
Sbjct: 109 NNNIVNLALAAATGISGSGSTTTGSSIPSPTGLSIGIFKQVNGELGLGAIAHALESTGHA 168

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTV 322
             L+ P +  +  + A+   G      T S +TGA+       +V   D G++L   P +
Sbjct: 169 NILSTPNMITLDNELATIKVGQNIPIITGSFTTGASGASNPFQTVDRKDVGLLLKVRPQI 228

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
              G I L I  E S     V++       VR  ++ V   +G  +VL GL+ DD  +  
Sbjct: 229 SEGGTIKLAIYHENSGIDNSVSSASGIVTTVRAIESNVLADNGQIVVLGGLISDDESENN 288

Query: 383 EGIPLLSKIPILGAL 397
           E +  L  IPILG L
Sbjct: 289 EKVRGLGDIPILGNL 303


>gi|262394223|ref|YP_003286077.1| putative maturation protein [Vibrio sp. Ex25]
 gi|262337817|gb|ACY51612.1| putative maturation protein [Vibrio sp. Ex25]
          Length = 353

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 14/233 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             + QV ++  I E      +++G    +  S +G        F  +  +          
Sbjct: 131 RPQKQVFIEAVITETELGDSQEVGVNMDLALSEAG--------FVSQPTAIKKAVDNLLF 182

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TS 306
            +   F  ++ A+ +    + L+ P +  +  +    T G    + T S  T        
Sbjct: 183 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 242

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +   D GV L   P V+    + L+I  +         A D+ +   R   T V++    
Sbjct: 243 IERKDVGVSLEVVPHVIGD-HVVLQIMQKSDSVTDSSIASDIIT-NTRTLQTVVKVKDRQ 300

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           TI L GL+  + +    G+P+L  +P+LGALFR+ + N  + E+ +     ++
Sbjct: 301 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 353


>gi|269105039|ref|ZP_06157734.1| type III secretion system outer membrane pore YscC [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160674|gb|EEZ39172.1| type III secretion system outer membrane pore YscC [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 624

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 118/321 (36%), Gaps = 28/321 (8%)

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQS 171
           ++ R ++ ++  ++         +   +     V +HG      +      +        
Sbjct: 218 VLSRVLSGVQTQIKATKESEETDINTAATTTKNVSVHGGASVEAEPGLNAIIVR------ 271

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSIT---GSSSGP 226
              Q      +K++  L+   + Q  ++V  +I ++  + L Q+G         G++S  
Sbjct: 272 -DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGIAVGNNSIL 327

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQ 283
                 D  G  V+ G   + K +LD  +       +  LE   + + ++ PTL      
Sbjct: 328 DIKTTGDVDGGDVTLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENV 387

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSE 338
            A   +      K +     A    T  YG +L   P ++         I L +  E   
Sbjct: 388 EAVLNNSSTFYVKLIGREIAALEKVT--YGTLLRIVPRIVGDRFVERPEINLSLHLEDGA 445

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            +      ++PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALF
Sbjct: 446 QIPDGGVDNVPSIRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALF 505

Query: 399 RNSRFNREETEIFIAATPFLV 419
           RN+      T       P +V
Sbjct: 506 RNTTDTTRRTVRMFIIEPRIV 526


>gi|328951048|ref|YP_004368383.1| type II and III secretion system protein [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451372|gb|AEB12273.1| type II and III secretion system protein [Marinithermus
           hydrothermalis DSM 14884]
          Length = 523

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 92/248 (37%), Gaps = 23/248 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV LKV + EV   +   +G +      S G   +   D G   +     F     L  
Sbjct: 281 QQVQLKVRVQEVDSQVFNNLGLKW--DSLSGGNLIASVLDNGLNLI-----FDATRSLAS 333

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISG-------------QSASFTSGGQHLYKTVSS 300
            +    L ALE+    R +++  L                  + A   +G + L      
Sbjct: 334 LNIVATLDALEKQNLARRVSDANLIIEDNFGASDEDLRQTGAKGAELKAGAKLLLPIRIG 393

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G   V   D G+ L   P + +  +I L + T+          G +     +   + +
Sbjct: 394 --GEIEVREFDVGLTLRLRPQITADRQILLEVFTQTGGDPQSGPEGSI-LIPQKSTLSKL 450

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G T+VL GL++  + + +  +P L  IPILG LFR +     +TE+ +  T  +V 
Sbjct: 451 RIKDGQTVVLGGLIERTVNKSENKVPFLGDIPILGMLFRQTSNEVRDTELLVVITANIVD 510

Query: 421 PVAMRDLS 428
                + S
Sbjct: 511 NAPSAEAS 518


>gi|262195825|ref|YP_003267034.1| general secretion pathway protein D [Haliangium ochraceum DSM
           14365]
 gi|262079172|gb|ACY15141.1| general secretion pathway protein D [Haliangium ochraceum DSM
           14365]
          Length = 842

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 104/272 (38%), Gaps = 36/272 (13%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + + V+  L+     QV ++  I EV+ D           +      S       GG   
Sbjct: 438 ALRDVIEKLDTP-RRQVFIEAMILEVQTDSG----LDLGASFHGGQLSDDGTLLLGGLQT 492

Query: 240 SE-----GGDFSVKGV-----------------LDRFSFETVLHALERATAIRTLAEPTL 277
           S+      G  +                     +   SF  +  AL  ++ +  L+ P +
Sbjct: 493 SDLQSIVPGTLAASSGLLGGVLGPLLNTQELLGVSIPSFGVLFQALATSSNVNVLSSPHI 552

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRI 328
              + + A  + G    Y++  S              SV   D  + L  TP + +   +
Sbjct: 553 VTTNNEEAEISVGQNIPYQSGLSGLPTAGTGVSFPVQSVQRQDVALTLKITPHINASDMV 612

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I  E+S+      AG  PS+  R   TTV +    +IV+ GL+ D +   +  +PLL
Sbjct: 613 TLEIDQEISDIASPDFAGLGPSWSKRTVKTTVVVRDQQSIVIGGLMSDRMTYNESKVPLL 672

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +P+LG  F+ +   + +T + I  TP+++K
Sbjct: 673 GDLPLLGYFFKFTERQKSKTNLLILLTPYVIK 704


>gi|91782693|ref|YP_557899.1| putative type III secretion hypersensitivity response secretion
           protein, HrcC/HrpA1- like [Burkholderia xenovorans
           LB400]
 gi|91686647|gb|ABE29847.1| Putative type III secretion hypersensitivity response secretion
           protein, HrcC/HrpA1- like protein [Burkholderia
           xenovorans LB400]
          Length = 736

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 15/238 (6%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKS------FAADFGGKFVSEGGDFSVK 248
           V +   + +V     + +G       G  SG S +      F A             ++ 
Sbjct: 354 VEIDAVVIDVSSSAARSLGVAWGGSNGRISGSSGTINSPLTFGAPALATAAGMASGLNLA 413

Query: 249 GVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
            ++   +      +HALE A   R L+ P +  ++   A  TS      +   +      
Sbjct: 414 TLVGNSAQYLFAQIHALEDAGQARVLSSPQVLTLNNMEAVLTSHSSVYVRVAGNQD--VD 471

Query: 307 VTTHDYGVVLHFTPTV----LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           +   D G+ L  TP++         I L IQ +       ++   +P        T   +
Sbjct: 472 LYNIDTGLTLKVTPSIESAADPRRNIRLNIQIDDGAFNTSMSVDGIPKVDNHSIVTQAIV 531

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             G ++++ G   +  +     +P+L  +P LG LFR+++  RE  E  I  TP L +
Sbjct: 532 RDGESLLVGGYQYERSESTTSKVPVLGDVPYLGVLFRDTQTTRERLERLILITPRLKR 589


>gi|325275757|ref|ZP_08141634.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51]
 gi|324099108|gb|EGB97077.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51]
          Length = 310

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 116/293 (39%), Gaps = 31/293 (10%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I I       L++PV ++ V V +P  ADV     R + +     G  ++++        
Sbjct: 39  IEIDQGLQQELRLPVAIERVAVGEPKVADVQASGERGVVITAVGQGNTSLMMWTACTPSP 98

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
               + + R  A  +M    F+   + ++               +Q   R VE+  +   
Sbjct: 99  HKAMVFV-RGRASADMAQDSFLPSQDTQL------------PSQVQADIRFVEVRRSKYK 145

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
           ++G   +   S+  ++          V                      + G+ +G +  
Sbjct: 146 EAGARLFFKGSNNSLIGSPGTVPNTVVRPD------------------YVPGAQTGENPI 187

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             AD       +   F++        F  +++ALE +    TLA P+LT +SGQ+ASF +
Sbjct: 188 AYADVRPGIPLDNSVFNIVWGGGSSRFLAMINALENSGFAYTLARPSLTVLSGQTASFLA 247

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           GG+      S+ +   S+   ++GV L  TPTV+S GRI L++  EVSE    
Sbjct: 248 GGEIPIPVPSAGSDNVSIEYKEFGVRLALTPTVISQGRITLKVAPEVSELDYS 300


>gi|83591449|ref|YP_425201.1| type II and III secretion system protein [Rhodospirillum rubrum
           ATCC 11170]
 gi|83574363|gb|ABC20914.1| type II and III secretion system protein [Rhodospirillum rubrum
           ATCC 11170]
          Length = 547

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 101/254 (39%), Gaps = 27/254 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----GPSKSFAADFGGKFVSEGGDFSV 247
             QV ++  I EV      + G    +           P  +          +       
Sbjct: 269 ATQVLIEAKIVEVTLKDQYRGGIDWKVLTDGGEFLLDIPGAAGVVAPPLTDAAATLSLGT 328

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------- 298
           +  L       ++  ++   A+RTL+ P LT ++ Q+A        +Y  V         
Sbjct: 329 RATLGPVELSALVQFIKTFGAVRTLSSPRLTVMNNQTAVLKVAENEVYFVVDVDTVTSDG 388

Query: 299 -SSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNA----------- 345
            + +T ++ + T   G+V+   P+V   G R+ L ++  +S     V             
Sbjct: 389 VTQTTYSSEINTVPIGLVMTVQPSVEPGGGRVTLGLRPTISRIADRVADPAVSLQNLSVQ 448

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P   VR+ D+ V + +G  +V+ GL+++ + + +EG+P L  +P++G  FR+   + 
Sbjct: 449 SLIPVVEVRELDSVVTIDNGAVVVMGGLMQERMGRDEEGVPGLGDVPLIGRAFRHDSADT 508

Query: 406 EETEIFIAATPFLV 419
           +  E+ +     ++
Sbjct: 509 DVVELVVLLRATVI 522


>gi|296123921|ref|YP_003631699.1| type II and III secretion system protein [Planctomyces limnophilus
            DSM 3776]
 gi|296016261|gb|ADG69500.1| type II and III secretion system protein [Planctomyces limnophilus
            DSM 3776]
          Length = 1469

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/371 (16%), Positives = 136/371 (36%), Gaps = 35/371 (9%)

Query: 73   DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
            +P     V    R + +     G  ++++           D  I R +  L+   R+ I 
Sbjct: 963  NPNLISTVEQLEREVVVVP-ETGTNSLLI----SATPRYYD-EITRLVMELDQAPRQVII 1016

Query: 133  DSNI---RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
             + I    ++ V +  V  G+  ++   +  V+   T    +       +++++V++   
Sbjct: 1017 QALIVEVTLDNVDEFGVELGLQDSVLFDRSVVDDLVTLTETTTSPNGTQTTTQRVVSQTA 1076

Query: 190  IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
              G               +        ++    SS  S+  ++   G+  ++ G   +  
Sbjct: 1077 APG------------FLFNNPNTPLGNNTTINPSSVGSQGLSSFSLGRVNNDLGYGGLVL 1124

Query: 250  VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGAT 305
                 S   ++ AL     ++ L+ P +  +  Q A    G Q       +  ++     
Sbjct: 1125 SAGSESVNVLIRALASRRRLQVLSRPQIRTLDNQQAQIQVGQQVPIVDGVQIGATGLANP 1184

Query: 306  SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRK 355
             +     G++L  TP +   G I + +  E S+               N  + P   +  
Sbjct: 1185 QIRQDQAGIILTVTPRISPDGTIVMELIAEKSQFRGNGVPIFTDATNGNVIESPIKDISA 1244

Query: 356  ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            A T + +P+G T+V+ G++    +  +  +P +  IPI+G LFR    +   TE+ I  T
Sbjct: 1245 ARTAISVPNGQTVVMGGMITATDETSERKVPFIGDIPIVGHLFRYDSKSHVRTELLIFLT 1304

Query: 416  PFLVKPVAMRD 426
            P ++   A  +
Sbjct: 1305 PRVISSDADSE 1315


>gi|225165932|ref|ZP_03727695.1| type II and III secretion system protein [Opitutaceae bacterium
           TAV2]
 gi|224799824|gb|EEG18290.1| type II and III secretion system protein [Opitutaceae bacterium
           TAV2]
          Length = 809

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 100/270 (37%), Gaps = 13/270 (4%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           ++++++ +++    QV ++V IAEV        G         +G    FAA   G  ++
Sbjct: 427 TRELIDKIDVLLA-QVRIEVVIAEVSLSDEATSGIDTLGLRIENGVLTGFAASGPGGKIA 485

Query: 241 EGGDFSVKGVLDRFSFETVLHALER--ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              + +        +   V+             L+ PT+     Q A    G +    T 
Sbjct: 486 GIDNGTFFQTAKENALAGVISLSTTPRKNNTNILSVPTIVTSHNQEAEVFIGEKRPIITG 545

Query: 299 SSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSY 351
           +++T  +      +T    G+ L  TP +   G + ++++ +V +    + ++  + P  
Sbjct: 546 TTTTSDSLSTSSQITQQQIGITLTVTPLIGPNGSVQMQLEQKVEDISGFVTIDGNEQPIT 605

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R A + +   SG  +VL G+ +            L  IP +G LF       + TEI 
Sbjct: 606 TDRNAKSFLSARSGDIVVLGGMQRTKKGNTTSR---LGPIPWIGDLFGKRSKTDQRTEIL 662

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
               P ++    + ++            A+
Sbjct: 663 FFIRPTVLTNTQLDNVEAYQQVDRAPHAAE 692


>gi|304321270|ref|YP_003854913.1| general secretion pathway protein D [Parvularcula bermudensis
           HTCC2503]
 gi|303300172|gb|ADM09771.1| general secretion pathway protein D [Parvularcula bermudensis
           HTCC2503]
          Length = 736

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 12/220 (5%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTH 310
           +  +L AL+  +    L  P++  +  +  +   G +    T  +       G   +   
Sbjct: 484 YGVLLSALQSDSQSNVLQVPSIVLLDNEEGTIQVGQEVPVVTGEAVGSDFQGGFRQIERK 543

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + G +L   P + +   + L++  EVS           P       D TV    G T+VL
Sbjct: 544 NIGNILQVKPQITAGNTVQLKLNLEVSSLGAFAPDAQGPITNESILDLTVSAEDGQTLVL 603

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LS 428
            GL+  D +Q +  +P+L  IP+LG LF+    + +E+ + I   P +++     D   +
Sbjct: 604 GGLVDKDRRQTESKVPVLGDIPLLGNLFKGQAQSDQESTLMIFIRPTILRDAQAADSVTA 663

Query: 429 RPDDHYSVED-----DAKAFFFNRVNKIYGPKEASEVEGQ 463
           R  D+   +      + +    + V + Y    A  V  Q
Sbjct: 664 RKYDYVRQQQMRRLREGQRPLLDTVVQDYIGPGADYVPSQ 703


>gi|304415496|ref|ZP_07396135.1| type III outer membrane secretin precursor [Candidatus Regiella
           insecticola LSR1]
 gi|304282655|gb|EFL91179.1| type III outer membrane secretin precursor [Candidatus Regiella
           insecticola LSR1]
          Length = 493

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 123/311 (39%), Gaps = 26/311 (8%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR--TIQDSQRAVELSETFLSQSGRNQYA 177
           +  L   LR   A + + V   +   + +  +   +    Q AV + +         Q  
Sbjct: 199 LPGLVTVLREMSAGNTLPVNTANGGKIENTSLPLFSADPRQNAVVVRDR--------QAN 250

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
               K ++N L++     + + VTI +V    + Q+G   + + S +G   SF +     
Sbjct: 251 MPIYKSLINQLDLR-PIGIEISVTIIDVDAGNINQLGIDWTSSTSLAGNKVSFRSGL--- 306

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            +    D     + D  +F   L AL++ +  R L+ P++  ++   A         + T
Sbjct: 307 -IPGSNDSFSSVIGDTDNFMVRLKALQQNSRARVLSRPSVVTLNNIPAVLD--KNITFYT 363

Query: 298 VSSSTGATSVTTHDYGVVLHFTPT-VLSPGR--IGLRIQTEVSEPVIGVNAGD-MPSYRV 353
                    + +   G +L  TP  +   GR  + L +  +        NA + +P  + 
Sbjct: 364 KLQGDKVAKLESITSGSLLRVTPRMINDNGRHEVLLNLNIKDGVQKSSNNATEPLPQVQD 423

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            +  T   L  G +++L G ++D   + ++ +P L  IP++G LFR++  +         
Sbjct: 424 SQISTQATLKIGQSLLLGGFIQDRQSEAEKKVPFLGDIPVIGELFRSTDKHSHS-----V 478

Query: 414 ATPFLVKPVAM 424
              FL+K V +
Sbjct: 479 VRLFLIKAVPV 489


>gi|167842291|ref|ZP_02468975.1| type III secretion system EscC protein [Burkholderia thailandensis
           MSMB43]
          Length = 508

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 11/223 (4%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V + V I +V    L  +G   S +    G S SF  + GG+   + G FS   V +   
Sbjct: 285 VEISVAIIDVNAQDLSMLGVDWSASARIGGGSVSF--NSGGE--PDSGSFSTV-VSNTGQ 339

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L ALE+    + L+ P++  +    A         + T  S+     + +   G +
Sbjct: 340 FMVRLSALEQNAKAQILSRPSVVTLDNMQAVLD--RNITFYTKVSAERVAKLESISTGSL 397

Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLA 371
           L  TP V+       I L +  +       ++  + +P     +  T   L  G  ++L 
Sbjct: 398 LRVTPRVIGDPGKQEIMLTLMVQDGRQTGALSKQEPLPQTLNSEIATHALLKEGQALLLG 457

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           G ++D++ + +  IPLL  IP+LG LF+    N+  T      
Sbjct: 458 GFVQDELSEGERKIPLLGDIPLLGNLFKMRHKNQRHTVRLFLI 500


>gi|289524045|ref|ZP_06440899.1| putative bacterial type II/III secretion system short domain
           protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502701|gb|EFD23865.1| putative bacterial type II/III secretion system short domain
           protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 589

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 102/307 (33%), Gaps = 44/307 (14%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            D   +   L+  I  +N+ V+    TV + G    ++D ++ ++               
Sbjct: 273 ADPKQVPAILQSLIGITNVAVDERLRTVYVTGRPDNLRDVEQLLQ--------------- 317

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD-----------ILKQIGFQHSITGSSSGP 226
                     ++  G  QV L+  + EVR             + K   F +   G S G 
Sbjct: 318 ---------RIDHPG-RQVMLQARLIEVRDTGRKELESIVDAVYKHWWFSYGAGGGSIGY 367

Query: 227 SKS-----FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             S     F  D       +G D            +  +  L  +     LA P++  + 
Sbjct: 368 VDSSEPENFDPDEDRPTSPQGVDLVDITRGTLRILDVGIRNLVESNKADILASPSVVTVD 427

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV- 340
           GQ AS        Y +     G    +    G  L FTP V     + + +     E V 
Sbjct: 428 GQKASIALTTNIKYISERDDAGNPVYSEERVGPKLDFTPIVGRDDTVTINVAISTGEVVE 487

Query: 341 --IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G    ++P    R+  T V + +G   V+ GL           IP+L+ IP+LG +F
Sbjct: 488 WRPGGMGEEVPVTSSREVTTMVRVRNGEPFVIGGLFDRRKTDTVSKIPVLADIPLLGEIF 547

Query: 399 RNSRFNR 405
           +      
Sbjct: 548 KTRTKRD 554


>gi|62185517|ref|YP_220302.1| general secretion pathway protein D [Chlamydophila abortus S26/3]
 gi|62148584|emb|CAH64356.1| probable general secretion pathway protein D [Chlamydophila abortus
           S26/3]
          Length = 753

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 129/353 (36%), Gaps = 24/353 (6%)

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           S I ++  S   V  G V+        +  S+T        + A    K ++  L++  +
Sbjct: 407 STISIDTASVGSVKEGSVK----YGNFIADSKTGTLIMVVEKEALPRIKMLLKKLDVP-K 461

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
             V ++V + E +    ++ G      G       S    +    + E       G    
Sbjct: 462 KMVRIEVLLFERKLSNQRKAGLNLLRLGEEVCKKTSSTISWTSSGILEFLFKGNTGSSVV 521

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             ++     L     +R  A P++  ++   A      +     VS+           YG
Sbjct: 522 PGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEMSI-AVSADKEKAQYNRAQYG 580

Query: 314 VVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           +++   P +      G+  + ++T+++    G NA + P    R     V +P G T+++
Sbjct: 581 IMIKMLPVINVGDEDGKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVII 640

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429
            GL        ++GIP L +IP +G LF  +     +TE+F+  TP ++  P+  ++   
Sbjct: 641 GGLRCKHASDSQDGIPFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILDNPIEKKERHE 700

Query: 430 PDDHYSVEDD----AKAFFFNRVNKIYGPKE----------ASEVEGQNYKGA 468
                S   +     +A F          K+          AS+V+G  Y G 
Sbjct: 701 EAILSSRPGENTEFRQALFAGEEAAKAAHKKLEFISAIELPASQVQGLEYDGR 753


>gi|296162480|ref|ZP_06845271.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. Ch1-1]
 gi|295887293|gb|EFG67120.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. Ch1-1]
          Length = 709

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 87/238 (36%), Gaps = 15/238 (6%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------SFAADFGGKFVSEGGDFSVK 248
           V +   + +V     + +G     +      +        +F A             ++ 
Sbjct: 354 VEIDAVVIDVSSSAARSLGVAWGGSNGRVSAASGTINSPLTFGAPALATAAGVASGLNLA 413

Query: 249 GVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
            ++   +      +HALE A   R L+ P +  ++   A  TS      +   +      
Sbjct: 414 TLVGNSAQYLFAQIHALEDAGQARVLSSPQVLTLNNMEAVLTSHSSVYVRVAGNQD--VD 471

Query: 307 VTTHDYGVVLHFTPTVL----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           +   D G+ L  TP++         I L IQ +       ++   +P        T   +
Sbjct: 472 LYNIDTGLTLKVTPSIESAAEPRRNIRLNIQIDDGAFNTSMSVDGIPKVDNHSIVTQAIV 531

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             G ++++ G   +  +     +P+L  +P +GALFR+++  RE  E  I  TP L +
Sbjct: 532 RDGESLLVGGYQYERSESTTSKVPVLGDVPYVGALFRDTQTTRERLERLILITPRLKR 589


>gi|323143301|ref|ZP_08077992.1| type III secretion outer membrane pore, YscC/HrcC family
           [Succinatimonas hippei YIT 12066]
 gi|322416918|gb|EFY07561.1| type III secretion outer membrane pore, YscC/HrcC family
           [Succinatimonas hippei YIT 12066]
          Length = 610

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 28/298 (9%)

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-----TGSSSGPSKSF 230
           Y     + V+  L++     V L   I +V       +G              +G     
Sbjct: 291 YRMPYYEDVIKELDVPVRL-VELHAAIVDVDVGAADSLGIDWQAARRTGNWQIAGGVGHQ 349

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            ++ G    + GG FS     D+ +F   ++ LE     RTL  P++  +    A+    
Sbjct: 350 ISNSGSLNPNGGGIFSTVFSTDQSAFMMQVNMLEEDNKARTLGRPSVLTLDNVEATLEDT 409

Query: 291 GQHLYKTVSSSTGATSVTTHDY--GVVLHFTPTVLS--PGR---IGLRIQTEVSEPVIGV 343
             +  K      G  S    +   G +L  TP ++    G    I + I  + ++     
Sbjct: 410 TTNYVKVA----GNESSDLFEVVSGTILRVTPHIIDSHDGSAPYIQMVISLQTNQDTDQS 465

Query: 344 NAGD-----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            +             +P  +    +T   +  G +++L G   ++ +    GIP+L  IP
Sbjct: 466 QSYTVSSDAQGADERIPVIKKTTINTQALVQQGQSLLLGGYYMENHRNSDNGIPVLKDIP 525

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           ++G LF +S     + E  +  TP ++    +   S  DD    +   +A +  R  K
Sbjct: 526 LIGGLFGSSSDEATQRERLLLITPRILDLDDINLPSGLDDKSFAKSPTQADYSMRETK 583


>gi|310779606|ref|YP_003967939.1| type II and III secretion system protein [Ilyobacter polytropus DSM
           2926]
 gi|309748929|gb|ADO83591.1| type II and III secretion system protein [Ilyobacter polytropus DSM
           2926]
          Length = 594

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 144/387 (37%), Gaps = 40/387 (10%)

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
           G + + + ++      ++    +TLR  + D    V            V +         
Sbjct: 214 GPNDRMLGSIRDDSGSELMTTRVTLRHALPDDVKTV------------VESAMREVEVSS 261

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--- 219
             +  +            +KK++  L++  + QV +   + +V+ ++ + +GF  +    
Sbjct: 262 FPKLNMIILKGTSSNILPAKKLIEDLDLP-QKQVRITAQVLDVKDNLFETLGFDWAYDSN 320

Query: 220 -----TGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
                T  +SG     + D G G   S   +F+             ++ L+    +   A
Sbjct: 321 GTSTYTDGTSGTFLGTSTDVGIGTGYSSAIEFAQSFNGGDDVLGVSINMLQSDQDMIISA 380

Query: 274 EPTLTAISGQSASFTSGGQHL--YKTVSSSTGATSVT--THDYGVVLHFTPTV----LSP 325
            P++  ++G+ A F++  + +  Y+      G T+ T    + G+V +  P +       
Sbjct: 381 VPSVVVLNGEEAEFSTTEEVIVGYEEEEDDDGNTTTTPMFEEAGLVFNVKPIIRTGADGG 440

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLKD 376
             I L + TEVS   +   + D  +            R  DTTV + SG ++ + G+ + 
Sbjct: 441 DTILLTLSTEVSNFNLVSTSADSDATTYNEDGGSKASRNIDTTVSVKSGESLFIGGMKRA 500

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD-LSRPDDHYS 435
           D+  +   IPLL  +P +G LFRN     E  +I+I     ++      D +     + +
Sbjct: 501 DVSNVTSKIPLLGDLPFVGFLFRNEAVESELRDIYIKIRAEIITDENREDQIDLKGFNRA 560

Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEG 462
                 +   +  N      E  ++ G
Sbjct: 561 EIHTMDSDILDHRNIYPAVPETPQILG 587


>gi|291615048|ref|YP_003525205.1| type II and III secretion system protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291585160|gb|ADE12818.1| type II and III secretion system protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 560

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 93/290 (32%), Gaps = 63/290 (21%)

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-- 246
            I+ + QV L+  I EV+ +   Q G    +  +      +      G  +S GG  +  
Sbjct: 255 QISIDRQVILEAKIVEVQLNDSFQSGVNWGVFKNGPNSHVTAGIGSPGSTLSPGGAVAST 314

Query: 247 -------------------------------VKGVLDRFSFETVLHALERATAIRTLAEP 275
                                                  +F  +L+ LE    +  L+ P
Sbjct: 315 LANTALTSTPGASLLPTATSLLPSSAVAGSLFGLAFQTSNFAALLNFLETQGNVHVLSSP 374

Query: 276 TLTAISGQSASFTSGGQHLYKT-VSSSTGATS----------VTTHDYGVVLHFTPTVLS 324
            +  ++ Q A    G    + T V+  T AT+          V     G+ L  TP +  
Sbjct: 375 RIATLNNQKAVLKVGTDEFFVTEVTGGTQATTAIAGTSPTVKVQPFFSGIALDVTPVIDE 434

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYR--------------VRKADTTVELPSGGTIVL 370
              I L +   VS         D+ +                V + D+ V    G  + +
Sbjct: 435 NNEIILHVHPSVSTVTTVNKTVDLGTSNGVSNIFNLPLASSSVSETDSIVRARDGQIVAI 494

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            GL++        G+P L K     ++F  +  + E+ E+ I   P +V 
Sbjct: 495 GGLMRQAEVNDDSGLPGLPK-----SIFGQTSKHTEKRELVILLKPTVVD 539


>gi|257092259|ref|YP_003165900.1| type II and III secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044783|gb|ACV33971.1| type II and III secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 624

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 132/375 (35%), Gaps = 46/375 (12%)

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           +   ++ L  T+    + +   ++    TVV      T +++   +   E  +       
Sbjct: 248 VAARVSQLAQTIAG--SPNPATLQNTGATVVKR---MTYREAASVIANPEGGVITVRATS 302

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
             +   ++ ++ +  +   QV ++ TI EV      Q G Q +   S +  S +      
Sbjct: 303 RQHEKVQEFLDRVMSSARRQVLIEATIVEVTLSDGYQQGIQWNRLTSGTEYSVTKPTLTT 362

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
               +          ++  S    +  L     ++ L+ P L  ++ Q+A+       +Y
Sbjct: 363 NVQNAVTPYVIKYSNINPASLLATVELLRLFGTVKVLSSPKLAVLNNQTATLRVSEDFVY 422

Query: 296 KTV---------------------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +V                      S+   T+  +   G  +  T  +   G + L ++ 
Sbjct: 423 FSVKQDAASAVGVVVGGAAAASGPVSNPTTTTPQSVSIGFFMSLTAQISDSGTVTLNVRP 482

Query: 335 EVSEP---------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
            +S                         +P  R R+ ++ + + SG   VL GL++D I 
Sbjct: 483 SISFIADLKQDPNPGLVNPKTGNTIPNLVPQIRTREIESMLRVESGDIAVLGGLMEDRIG 542

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
                +P L  IP +G +F N   +  ++E+ +   P +++  ++         +  + D
Sbjct: 543 NTVGRLPGLGDIPFVGEVFNNRGNSSSKSELVVLLRPTVIRDASIDGDFSSFREFLPKKD 602

Query: 440 AKAFFFNRVNKIYGP 454
                F R +++Y P
Sbjct: 603 -----FFRTDQVYRP 612


>gi|37520489|ref|NP_923866.1| hypothetical protein gll0920 [Gloeobacter violaceus PCC 7421]
 gi|35211483|dbj|BAC88861.1| gll0920 [Gloeobacter violaceus PCC 7421]
          Length = 632

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 99/249 (39%), Gaps = 15/249 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIG-FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
            QV  +V I E+     +++   +   +GS+  P  +     GG F       +   +  
Sbjct: 382 RQVVFEVKIVELSDAGSRELNALRTIQSGSAVSPGNTAPLSLGGLFSPPTSFATFNDIAR 441

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH------LYKTVSSSTGATS 306
                 V++ L      R + +  L  I+GQ AS             L     ++   T+
Sbjct: 442 AI---VVINGLITENKARVVTDTKLNTITGQKASIDVQTDINLILNQLTNVSGATVNNTT 498

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVE 361
           ++T   G V+  TPTV + G +   +  E S P              P+   RK    + 
Sbjct: 499 LSTLRAGTVVELTPTVQADGNVLAELSVESSVPQGTTTLTSSGTTVPPNIARRKVKNIIL 558

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G T+ + GL++   +++   +P    IP++G LF N+  + E++E+ +  TP +   
Sbjct: 559 VKDGQTLEIGGLIQTTNREVITRVPFFGYIPLIGQLFSNTNVSLEQSELVVFITPRVRDV 618

Query: 422 VAMRDLSRP 430
             + D   P
Sbjct: 619 QPLPDTKLP 627


>gi|237753431|ref|ZP_04583911.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375698|gb|EEO25789.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 487

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 107/299 (35%), Gaps = 37/299 (12%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------- 217
           ++ +    +  +  L+   + QV + V I  VR + +K +G                   
Sbjct: 192 DKKSLQKVESYIEALHKRLQKQVLIDVQILSVRHNNVKTMGINWDSLYNLQNLMIPPFSE 251

Query: 218 -SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
            +  G +     +      G        + +       S   ++  L+    +++++ P 
Sbjct: 252 SATLGGNGEIGSTSGISITGGSKGSSVQYGLNIFSAGLSLNRIVEFLKGYGEVQSISNPK 311

Query: 277 LTAISGQSASFTSGGQHLYK----------TVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
           +  ++ Q A  + G    YK            + +       +   GV+L  TP V    
Sbjct: 312 VLTLNNQPAMISVGDILRYKKSNIYQNTNAQTTLTNTNNEYPSIFAGVLLDITPLVFED- 370

Query: 327 RIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            I L++   +++       +        P+    +  + V++ +   ++L GL+  +  +
Sbjct: 371 SIMLKVNPSITKTKDMQTKIAASAFDAPPNLTTNQLSSIVKVKNNQKVILGGLIAQNTAK 430

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
               IPLL  IP++  LF  +  +    EI    TP +++     +LS     Y++  D
Sbjct: 431 ESNKIPLLGDIPLIKPLFSYTHDSISTEEIVFIITPRIIE---EEELSLAKLGYTLIGD 486


>gi|291297113|ref|YP_003508511.1| type II and III secretion system protein [Meiothermus ruber DSM
           1279]
 gi|290472072|gb|ADD29491.1| type II and III secretion system protein [Meiothermus ruber DSM
           1279]
          Length = 509

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 127/350 (36%), Gaps = 56/350 (16%)

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
            I + R        +++  A S+ R   ++D +   G   T Q   +          Q+ 
Sbjct: 179 RIDVPRATTATIPVVQKSFALSHARATELADVL---GKAITAQAQGQTTPAQGQGQGQAQ 235

Query: 173 RNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIG 214
                   ++   N L + G                    QV L++ +  V  ++++ +G
Sbjct: 236 PAPQVTVVAEPRTNTLIVTGTAEQIALAERLIPNLDRPVQQVQLQIRVQAVSGEVIRNLG 295

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGD--FSVKGVLDRFSFETVLHALERATAIRTL 272
            +                +    F+S G +  F     L   +   VL ALE+    R L
Sbjct: 296 IKW---------ETVSGGNLIASFLSTGLNLIFDATRSLASLNIRAVLDALEKQQLSRRL 346

Query: 273 AEPTLTAISG-------------QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           ++  +                  + A    GG+ L           +V   DYG+++   
Sbjct: 347 SDANVLVEDNYGADTSDLRATGAKGAEIKVGGRLLIPITIGD--QITVREFDYGLLVRVR 404

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR----KADTTVELPSGGTIVLAGLLK 375
           P + + G I L + T+      G +  D P+  +R       + + +  G T+VL GL++
Sbjct: 405 PQISTDGNILLEVFTQ-----TGGDPADGPAGSIRIPQQSTLSKLRIRDGQTVVLGGLIQ 459

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
                 +  IPLL  IP+LG LF+    + ++ E+ +  T  +VK  A R
Sbjct: 460 KVTDTSETKIPLLGDIPLLGELFKQRTSSIKDDELIVIITGNIVKDSAQR 509


>gi|89111142|dbj|BAE80232.1| HrcC [Acidovorax avenae subsp. avenae]
          Length = 683

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 115/295 (38%), Gaps = 18/295 (6%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYAN-------SSSKKVMNLLNIAGEDQVTLKVTIAE 204
            T   + +A E    F +  G N           +  + +++ L+      V L+ TI E
Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMAEYESLIHRLD-QKPQLVELEATIIE 456

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V  D +  +G   S+   +S    S A +  G   S     S   +         ++ALE
Sbjct: 457 VNSDSVDALGVNWSLRAGTS----SIATNLPGP--STPAALSTIVLDAGRHLLANVNALE 510

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                R L++P++  ++ ++A      +     V+ +  A      + G +L  TP V +
Sbjct: 511 AQGKARILSKPSVLGVANRAAVMRE-KRVATVRVAGNLEANLFQ-IEAGTLLQMTPQVTA 568

Query: 325 -PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             G+  +++   + +     N  D +P  +  +  T   +  G ++++ G+  +      
Sbjct: 569 VEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQD 628

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +P LSK+P++G +FRN+      TE     TP ++   A   +S         
Sbjct: 629 NAVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683


>gi|320107862|ref|YP_004183452.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
 gi|319926383|gb|ADV83458.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
          Length = 810

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 113/323 (34%), Gaps = 25/323 (7%)

Query: 117 ERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           + D   +   LR  +   + + +    + +V+      +   ++ ++  +    +   + 
Sbjct: 287 QNDANEVVTALRNLLDPSTKVFLLASQNAIVIRATPAELVLVEKLIDDFDRIRPEVVVDV 346

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
                S+ +   L I                           S + SS+  S +      
Sbjct: 347 AVLEVSRDLERNLGITLPT---------SFSLSAQASNANSSSSSSSSTTSSSTSGLTLN 397

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                 G +F+V            ++AL   +  R L  P + A  GQ A+   G +   
Sbjct: 398 TLANLNGTNFAVT------LSSASVNALLSDSDTRVLQNPRVRASDGQQATLKIGSKIPV 451

Query: 296 KTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
            T S+++  T         T  D GV +  TPTV   G++ L+++ EVS          +
Sbjct: 452 ATGSTTSTLTSTATATTQFTYVDVGVNIDMTPTVHLDGQVSLKMKIEVSSQTGTTTISGV 511

Query: 349 --PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P    R     ++L  G   +LAGLL+    +   G P L +IP L   F +    + 
Sbjct: 512 SEPIISQRVVQQVIQLKDGEPSILAGLLQQSDTKSVSGTPGLGEIPFLKYFFSSQDKKQS 571

Query: 407 ETEIFIAATPFLVKPVAMRDLSR 429
             EI     P +V+   + D + 
Sbjct: 572 SDEIVFLLIPHIVRESPLTDANT 594


>gi|329943286|ref|ZP_08292060.1| bacterial type II and III secretion system family protein
           [Chlamydophila psittaci Cal10]
 gi|332287864|ref|YP_004422765.1| putative general secretion pathway protein D [Chlamydophila
           psittaci 6BC]
 gi|313848436|emb|CBY17440.1| probable general secretion pathway protein D [Chlamydophila
           psittaci RD1]
 gi|325507393|gb|ADZ19031.1| putative general secretion pathway protein D [Chlamydophila
           psittaci 6BC]
 gi|328814833|gb|EGF84823.1| bacterial type II and III secretion system family protein
           [Chlamydophila psittaci Cal10]
 gi|328915126|gb|AEB55959.1| general secretion pathway protein D [Chlamydophila psittaci 6BC]
          Length = 753

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 131/363 (36%), Gaps = 26/363 (7%)

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           E  LR   +  +I    V    V  G V+        +  S+T        + A    K 
Sbjct: 399 EAILREAASTISIDTTSVGS--VKEGSVK----YGNFIADSKTGTLIMVVEKEALPRIKM 452

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++  L++  +  V ++V + E +    ++ G      G       S A  +    + E  
Sbjct: 453 LLKKLDVP-KKMVRIEVLLFERKLSSQRKAGLNLLRLGEEVCKKSSSAISWTSSGILEFL 511

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                G      ++     L     +R  A P++  ++   A      +     VS+   
Sbjct: 512 FKGNTGASLVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEMSI-AVSADKE 570

Query: 304 ATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
                   YG+++   P +      G+  + ++T+++    G NA + P    R     V
Sbjct: 571 KAQYNRAQYGIMIKMLPVINVGDEDGKSYITLETDITFDTTGKNANERPDVTRRNITNKV 630

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +P G T+++ GL        ++GIP L +IP +G LF  +     +TE+F+  TP ++ 
Sbjct: 631 RIPDGETVIIGGLRCKHASDSQDGIPFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILD 690

Query: 421 -PVAMRDLSRPDDHYSVEDD----AKAFFFNRVNKIYGPKE----------ASEVEGQNY 465
            P+  ++        S   +     +A            K+          AS+V+G  Y
Sbjct: 691 NPIEKKERHEEAILSSRPGENTEFRQALLAGEEAAKAAHKKLELISAIELPASQVQGLEY 750

Query: 466 KGA 468
            G 
Sbjct: 751 DGR 753


>gi|329901079|ref|ZP_08272701.1| Type III secretion outermembrane pore forming protein
           (YscC,MxiD,HrcC, InvG) [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549244|gb|EGF33826.1| Type III secretion outermembrane pore forming protein
           (YscC,MxiD,HrcC, InvG) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 432

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 128/357 (35%), Gaps = 41/357 (11%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           + D    + + R  + +  I                   D+ +++     + S + R  Y
Sbjct: 16  DGDTDEFKRSSRSKMPNVRI-------------------DADQSLNAIIIYDSGNKRTMY 56

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFG 235
                + ++  L+I    Q+ ++  I ++ R  L Q+G +   T GS S      + D  
Sbjct: 57  -----QALITELDI-EPQQIEIEALIVDIDRSQLNQLGAEWGFTAGSVSATFNGMSTDSK 110

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G  +   G   +  + +  +F   L+A+E     R LA+ T++ +   +A          
Sbjct: 111 GASLPISGSTLL--IKNAANFYAKLNAMENKGDARILAKQTISTLENIAAVLDLSQSRYL 168

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYR 352
             V        +   + G +L  TP ++  G   R+ L I  E  +     +A    +  
Sbjct: 169 PLVGERV--VDLANVNVGTMLKVTPRIVREGPLTRVRLDINIE--DGAFSADAASSTNVT 224

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
                T   +    T+++ G   +   Q ++ IP+L  IP+ G LF+N+  +    E   
Sbjct: 225 RSTITTQAIIEPQHTLLIGGYHSEAKTQSRQKIPVLGDIPVFGGLFQNNSDSVNNRERLF 284

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
             TP +     +  L      Y  E   +     R  ++  P   S    Q  +G  
Sbjct: 285 LITPRI---SGLTGLQANRQSYLAEKAREILQAERALQLSPP---SPPASQQTRGTA 335


>gi|27550050|gb|AAO18033.1| LscC [Photorhabdus luminescens]
          Length = 621

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 102/251 (40%), Gaps = 18/251 (7%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-------SKSFAADFGG 236
           ++N+L+      + + ++I ++  + L ++G    + G ++GP       + +     G 
Sbjct: 278 LINVLDKPSAR-IEVALSIVDIDANNLSELGVDWQV-GINTGPRHIIDITTSAGEKKEGK 335

Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           +     G  ++  ++DR   +     +  LE   + + ++ PTL       A   +   +
Sbjct: 336 EKGESIGSAALGSLVDRRGLDYLLAKITLLESKGSAQVISRPTLLTQENTQAVIDNNETY 395

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MP 349
             K   +      + +  YG +L   P V+  G    I L +  E        +  D +P
Sbjct: 396 YVKV--NGERVAELKSLTYGTMLRMIPRVIQVGDSPEISLDLHIEDGNQKPNSSGRDGIP 453

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +      DT   +  G ++++ G+ +D++ Q+   +P L  IP LG LFRN+      + 
Sbjct: 454 TISRTVVDTVARVGHGQSLLIGGIYRDEMSQITRKVPFLGDIPYLGVLFRNTSEQVRRSV 513

Query: 410 IFIAATPFLVK 420
                 P L+ 
Sbjct: 514 RLFIIEPRLID 524


>gi|302877407|ref|YP_003845971.1| type IV pilus secretin PilQ [Gallionella capsiferriformans ES-2]
 gi|302580196|gb|ADL54207.1| type IV pilus secretin PilQ [Gallionella capsiferriformans ES-2]
          Length = 705

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 93/252 (36%), Gaps = 14/252 (5%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
           +K++  +++    QV ++           + +G +      ++  +   A          
Sbjct: 453 RKLLKQIDVP-VRQVMIEARFVSAGDSFARSLGGKLGYASPANAANGGAATTGAINGVNV 511

Query: 237 KFVSEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
              +         +L  F+          L+A E     + +A P +       AS  SG
Sbjct: 512 NLPNSLAGTGGGLLLSLFNPAATKVLTLELNASETDGITKNIASPRVVTADKTKASIKSG 571

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y    +     +       + L  TP +     I + +    S+  +G     +PS
Sbjct: 572 VEIPYTIAGTVGSPPTTAFKTAALSLDVTPRITPDNNINMTLVA--SQDTVGALYSGVPS 629

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   D+      +PLL  IP+LG +F+N      + E+
Sbjct: 630 INSKMVTTEVLIENGGTVVVGGVFTQDVADTVNKVPLLGDIPVLGWMFKNKVKTDAKNEL 689

Query: 411 FIAATPFLVKPV 422
            I  TP +++  
Sbjct: 690 LIFITPKIMQDS 701


>gi|71909017|ref|YP_286604.1| type II and III secretion system protein [Dechloromonas aromatica
           RCB]
 gi|71848638|gb|AAZ48134.1| type II and III secretion system protein [Dechloromonas aromatica
           RCB]
          Length = 594

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 133/341 (39%), Gaps = 40/341 (11%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
              +   +    T+V H    T +++   +  +E+ +      Q  +   ++ ++ +  +
Sbjct: 259 PAPSSASQAAGTTLVRH---STFREAASVIMNAESGVITVRATQKQHERIQEFLDRVGNS 315

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV ++ TI EV      Q G     T  + G + SF  D   K  +           
Sbjct: 316 ARRQVLIEATIVEVTLKDGYQQGINW--TQLARGGTFSFIGDALTKNATN------LTYT 367

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---- 307
                  ++  L+     + L+ P L+ ++ Q+A       ++Y +V + T  T+     
Sbjct: 368 KGGDPNALVTMLDTFGTTKVLSSPRLSVMNNQTALLKVVENYVYFSVKADTTTTANVGTT 427

Query: 308 -------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----------AGDMP 349
                   +   G+V+  TP +     + L ++  ++     V            +  +P
Sbjct: 428 TAYTTTPQSVSVGLVVSVTPQISDGDAVTLNVRPTITSVAREVQDPNPDLKKNSISNLVP 487

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
             R R+ ++ + + SG   +L GL++D I    + +PLL +IPI G L  N     ++TE
Sbjct: 488 VIRTREIESIMRVASGNIAILGGLMEDKIDYQTQRVPLLGQIPIAGELVNNRNNAAQKTE 547

Query: 410 IFIAATPFLVKPVA-------MRDLSRPDDHYSVEDDAKAF 443
           + I   P ++K  +       MR     D  ++   +A+ F
Sbjct: 548 LVIFLRPVVIKDASLEGDYANMRGFLPNDSFFAQPSEAQPF 588


>gi|89111175|dbj|BAE80264.1| HrcC [Acidovorax avenae subsp. avenae]
          Length = 683

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 113/295 (38%), Gaps = 18/295 (6%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS-------KKVMNLLNIAGEDQVTLKVTIAE 204
            T   + +A E    F +  G N              + ++  L+      V L+ TI E
Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLD-QKPQLVELEATIIE 456

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V  D +  +G   S+   +S    S A +  G   S     S   +         ++ALE
Sbjct: 457 VNSDSVDALGVNWSLRAGTS----SIATNLPGP--STPAALSTIVLDAGRHLLANVNALE 510

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                R L++P++  ++ ++A      +     V+ +  A      + G +L  TP V +
Sbjct: 511 AQGKARILSKPSVLGVANRAAVMRE-KRVATVRVAGNLEANLFQ-IEAGTLLQMTPQVTA 568

Query: 325 -PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             G+  +++   + +     N  D +P  +  +  T   +  G ++++ G+  +      
Sbjct: 569 VEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQD 628

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +P LSK+P++G +FRN+      TE     TP ++   A   +S         
Sbjct: 629 NAVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683


>gi|311235499|gb|ADP88352.1| type III secretion outer membrane pore, YscC/HrcC family
           [Desulfovibrio vulgaris RCH1]
          Length = 696

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 106/289 (36%), Gaps = 25/289 (8%)

Query: 154 IQDSQRAVELSETFLSQS--GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            QD Q+   +++  ++        Y     + V+  L+   E  V +   I ++  +  +
Sbjct: 324 AQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDLDRPVEL-VEIHAAIVDIDTNFKR 382

Query: 212 QIGFQHSIT-----GSSSGPSKSFAAD------FGGKFVSEGGDFSVKGVLDRFSFETVL 260
            +G  +  T       + G   S   D        G     G   S    +    F   +
Sbjct: 383 DLGVTYQATVGKDQRWAGGADVSTGTDKFTPLPVPGVPQGSGLTLSTIYTMGSDYFLARI 442

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
           +ALE+    R L  P++  +    A+  +   +  +       A  +   + G VL  TP
Sbjct: 443 NALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQVQGYQ--AVDLFKVEAGTVLRVTP 500

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---------AGDMPSYRVRKADTTVELPSGGTIVLA 371
            +++       I+  VS      N            +P  +  K +T   + +G ++++ 
Sbjct: 501 HIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIPPIKQTKINTQAIIGAGQSLLIG 560

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G   +      +G+P+L  IP+LG LF+      +  E  I  TP +V+
Sbjct: 561 GYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRMERLILITPKVVR 609


>gi|317486813|ref|ZP_07945629.1| YscC/HrcC family type III secretion outer membrane pore [Bilophila
           wadsworthia 3_1_6]
 gi|316921976|gb|EFV43246.1| YscC/HrcC family type III secretion outer membrane pore [Bilophila
           wadsworthia 3_1_6]
          Length = 614

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 112/312 (35%), Gaps = 27/312 (8%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRN--QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           G     Q++ +   +++  ++    N  +Y      KV+  L+   E  V +   I ++ 
Sbjct: 250 GGQAAPQNATQVNIMADPRVNAVLVNDAEYRMPYYAKVIADLDRPVEL-VEIHAAIVDID 308

Query: 207 RDILKQIGFQ----------HSITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVLDRFS 255
            D  + +G             S  G  SG    F+     G     G + S         
Sbjct: 309 SDFKRDLGVTYQGANSRDKGWSTGGEFSGTGDKFSPLPTMGTPSGTGMNLSTIYTHGADF 368

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + ALE     R L  P++  +    A+  +   +  +       A  +   + G V
Sbjct: 369 FLARIQALEAEGEARMLGRPSVLTVDNVQATLENTSTYYIQVEGYQ--AVDLFKVEAGTV 426

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIG-------VNAGDMPSYRVRKADTTVELPSGGTI 368
           L  TP ++   R    I+  VS            V+   +P  +  K +T   + +G ++
Sbjct: 427 LRVTPHIIRNERGQTSIKLAVSVQDDQNDSKDAPVSDNSVPPIKQTKINTQAIVGAGQSL 486

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----PVAM 424
           ++ G   +       GIP+L  IP+LG LF+ +    +  E  I  TP ++     P   
Sbjct: 487 LIGGYYYEQKSTDASGIPILMHIPVLGNLFKTTSKGTKRMERLILITPKVIHLDEIPTTP 546

Query: 425 RDLSRPDDHYSV 436
             +  P  H S 
Sbjct: 547 PRVDEPTFHRSP 558


>gi|326315361|ref|YP_004233033.1| type III secretion outer membrane pore, YscC/HrcC family
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372197|gb|ADX44466.1| type III secretion outer membrane pore, YscC/HrcC family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 683

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 113/295 (38%), Gaps = 18/295 (6%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS-------KKVMNLLNIAGEDQVTLKVTIAE 204
            T   + +A E    F +  G N              + ++  L+      V L+ TI E
Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLD-QKPQLVELEATIIE 456

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V  D +  +G   S+   +S    S A +  G   S     S   +         ++ALE
Sbjct: 457 VNSDSVDALGVNWSLRAGTS----SIATNLPGP--STPAALSTIVLDAGRHLLANVNALE 510

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                R L++P++  ++ ++A      +     V+ +  A      + G +L  TP V +
Sbjct: 511 AQGKARILSKPSVLGVANRAAVMRE-KRVATVRVAGNLEANLFQ-IEAGTLLQMTPQVTA 568

Query: 325 -PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             G+  +++   + +     N  D +P  +  +  T   +  G ++++ G+  +      
Sbjct: 569 VEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQD 628

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +P LSK+P++G +FRN+      TE     TP ++   A   +S         
Sbjct: 629 NAVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683


>gi|312881261|ref|ZP_07741059.1| YscC/HrcC family type III secretion outer membrane protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309371153|gb|EFP98607.1| YscC/HrcC family type III secretion outer membrane protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 489

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 116/298 (38%), Gaps = 31/298 (10%)

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---NLLNI----------- 190
           V + G+V  ++  ++  ++ +   +Q   +  A+S    V+   N +++           
Sbjct: 200 VKVPGVVSVLKQMEQG-DVGDETKNQGSTSFSADSRQNAVIIRTNKMDMDMYASLIKQLD 258

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              + + + VTI +V      Q+G   S      G S SF         S   D     +
Sbjct: 259 VSPEMIEVSVTIIDVDTSDFNQLGIDWSAAAKIGGGSISFNQG------SMSSDNFSTVI 312

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            +  +F   L+ALE+ +  + L+ P++  ++   A         + T         + + 
Sbjct: 313 GNTGNFMVRLNALEQNSKAKVLSRPSVVTLNNVQAVLD--KNVTFYTKVEGEKVAKLESV 370

Query: 311 DYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVEL 362
             G +L  TP +++     R+ L +  +  +              +P     +  T   L
Sbjct: 371 TTGSLLRVTPRIVNEKHHQRVMLSLNIQDGQQTGQQKKAIGTNDALPQVENSEIATQATL 430

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +G +++L G ++D  + ++  IPLL  IP+LG LFR++  + +            VK
Sbjct: 431 KTGESLLLGGFVQDKNKTVENKIPLLGDIPLLGGLFRSTNHSTQSVMRLFLIKAEPVK 488


>gi|149200050|ref|ZP_01877075.1| type 4 fimbrial biogenesis protein PilQ [Lentisphaera araneosa
           HTCC2155]
 gi|149136808|gb|EDM25236.1| type 4 fimbrial biogenesis protein PilQ [Lentisphaera araneosa
           HTCC2155]
          Length = 864

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 112/340 (32%), Gaps = 106/340 (31%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------------------------ 226
             E+Q+ ++    E+ +D + ++ F+ SI     G                         
Sbjct: 509 PAENQIIIESKFYEINQDDIDELAFEWSIARIEDGSGFTDPNAGYIGRDPSYVGGVNGDP 568

Query: 227 --------SKSFAADFGGKFVSEGGD----------------------FSVKGVLDRFSF 256
                   S  F+ D  G   S GGD                      F    +L   +F
Sbjct: 569 NGSLNDFLSDGFSLDKSGDLTSAGGDGLESAVRSLGSVLGAPGLSQGTFKFASILGDTTF 628

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----------KTVSSSTGATS 306
            T++ A+++ +    L  P +T  +G +A      +  +          +      G+ S
Sbjct: 629 NTLVSAIQQRSGEDVLNAPKVTTQNGHTAKIRVVQERYFPEEWEEPEVEQNSQGDGGSAS 688

Query: 307 VTT---------HDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAGDM-------- 348
             T          D G VL  TP +    R I L+++ EV E V   N  ++        
Sbjct: 689 TVTPSKPVFGEPRDIGAVLTVTPQIDPDQRVIELQLKPEVIEFVEYDNTFNVDMLVGQEV 748

Query: 349 ------------------------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
                                   P +  R  DTTV +  G T+ L G++ ++    ++ 
Sbjct: 749 TFIPIIGNPFTVTVYTAFEQKFSMPIFESRTVDTTVRVWDGETLALGGMISENKTTYEDK 808

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           IP L  IP LG  F ++     +  + I  T  L+ P  +
Sbjct: 809 IPYLGDIPFLGRFFTSNGERSVKQNLIIFVTARLIDPSGL 848


>gi|260778653|ref|ZP_05887545.1| type III secretion system outer membrane pore YscC [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604817|gb|EEX31112.1| type III secretion system outer membrane pore YscC [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 484

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 114/288 (39%), Gaps = 28/288 (9%)

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---NLLNIA---------- 191
           V + G+V  ++  ++  +      +Q   +  A+S    V+   N +++A          
Sbjct: 200 VTIPGVVSVLKQMEQ--DEGPDASNQGTTSFSADSRQNAVIIRTNKMDMAMYASLIKQLD 257

Query: 192 -GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
                + + VTI +V      Q+G   S      G S +F         S   D     +
Sbjct: 258 ITPTMIEVSVTIIDVDTSDFNQLGIDWSAAAKFGGGSVTFNQG------SLSSDNFSTVI 311

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            +  +F   L+ALE+ +  + L+ P++  ++   A         + T         + + 
Sbjct: 312 GNTGNFMVRLNALEQNSKAKVLSRPSVVTLNNVQAVLD--KNVTFYTKIEGEKVAKLESV 369

Query: 311 DYGVVLHFTPT-VLSPG--RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
             G +L  TP  V      ++ L +  +  +    V++ D +P     +  T   L +G 
Sbjct: 370 TTGSLLRVTPRLVNENNFKKVMLSLNIQDGQQAKPVSSKDPLPQVENSEIATQATLKTGE 429

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +++L G ++D    ++  IPLL  IP+LG LFR++  +++        
Sbjct: 430 SLLLGGFVQDKDHTVENKIPLLGDIPLLGGLFRSTDHSKQSVMRLFLI 477


>gi|167567127|ref|ZP_02360043.1| type III secretion system EscC protein [Burkholderia oklahomensis
           EO147]
          Length = 482

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 11/223 (4%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V + V I ++  + L  +G   S +    G S SF  + GG+   + G FS   + +  S
Sbjct: 259 VEISVAIIDINAEDLGALGVDWSASARIGGGSVSF--NSGGQ--PDAGSFSTV-IANTGS 313

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L AL++ +  R L+ P++  +    A         + T  S+     + +   G +
Sbjct: 314 FMVQLSALQQNSKARILSRPSIVTLDNMQAVLD--RNITFYTKVSAERVAKLESISTGSL 371

Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLA 371
           L  TP ++       + L +  +       ++  + +P     +  T   L  G  ++L 
Sbjct: 372 LRVTPRIIGDAGRQEVMLTLVVQDGRQTSPLSQQEPLPQTLSSEIATHSLLKEGEALLLG 431

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           G ++D++ + +  IPLL  IP LG LF+ +R ++  T      
Sbjct: 432 GFVQDELSEGERKIPLLGDIPFLGRLFKTTRQSQRHTVRLFLI 474


>gi|330443957|ref|YP_004376943.1| type II and III secretion system protein [Chlamydophila pecorum
           E58]
 gi|328807067|gb|AEB41240.1| Bacterial type II and III secretion system protein [Chlamydophila
           pecorum E58]
          Length = 751

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 135/346 (39%), Gaps = 20/346 (5%)

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           +  +    A   ++++  S   +  G V+        +  S+T        + A S  + 
Sbjct: 393 KAEISMAKASPLVQIDTSSGVPMKEGPVK----YGNFIADSKTGTLVMVVEKEALSRIQM 448

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFG-GK 237
           ++  L++  +  V ++V + E +    ++ G         I+  S  P+ S+ +  G  +
Sbjct: 449 LLKKLDVP-KKMVRIEVLLFERKLSHDRKSGLNLLRLGEEISKKSLTPTVSWGSGAGILE 507

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F+ +G      G      ++     L     +R  A P++  ++   A      +     
Sbjct: 508 FLLKG----ATGCSIVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVDEMSI-A 562

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           VS+           YG+++   P +      G+  + ++T+++    G N  D P    R
Sbjct: 563 VSAENDKALYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNMDDRPEVTRR 622

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
                V +  G ++++ GL    +   +EGIP L +IP LG LF  +  +   TE+F+  
Sbjct: 623 NITNKVRIADGESVIIGGLRCKHMSDSQEGIPFLGEIPGLGKLFSMNAVSDSLTEMFVFI 682

Query: 415 TPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           TP ++  P+  ++        S   + + F+   V      + A +
Sbjct: 683 TPKILDNPMEKQERYEEALLASRPGEDEEFYQALVASEAVARSAQQ 728


>gi|167574392|ref|ZP_02367266.1| type III secretion system EscC protein [Burkholderia oklahomensis
           C6786]
          Length = 487

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 11/223 (4%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V + V I ++  + L  +G   S +    G S SF  + GG+   + G FS   + +  S
Sbjct: 264 VEISVAIIDINAEDLGALGVDWSASARIGGGSVSF--NSGGQ--PDAGSFSTV-IANTGS 318

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L AL++ +  R L+ P++  +    A         + T  S+     + +   G +
Sbjct: 319 FMVQLSALQQNSKARILSRPSIVTLDNMQAVLD--RNITFYTKVSAERVAKLESISTGSL 376

Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLA 371
           L  TP ++       + L +  +       ++  + +P     +  T   L  G  ++L 
Sbjct: 377 LRVTPRIIGDAGRQEVMLTLVVQDGRQTSPLSQQEPLPQTLSSEIATHSLLKEGEALLLG 436

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           G ++D++ + +  IPLL  IP LG LF+ +R ++  T      
Sbjct: 437 GFVQDELSEGERKIPLLGDIPFLGRLFKTTRQSQRHTVRLFLI 479


>gi|313667332|ref|YP_004049733.1| type II and III secretion system protein [Oceanithermus profundus
           DSM 14977]
 gi|313153963|gb|ADR37813.1| type II and III secretion system protein [Oceanithermus profundus
           DSM 14977]
          Length = 804

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 98/264 (37%), Gaps = 24/264 (9%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              DQV  +V I EV R    ++G            +  FA       ++ G D    G 
Sbjct: 519 RPADQVVSRVWIQEVDRSAANELGINWQY------ATGKFAISVTEGVLTGGYD---SGA 569

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--------T 302
               +    +  LE+    R L +     ++ +  +  SGG+ L      +        T
Sbjct: 570 SALSALAQSIRLLEKTGRSRRLLDANTLTLNAEPTTLLSGGKLLLPKQGDTGNVDGQEGT 629

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           G T     +YG+ L  TP     G I L I T V                   A++ + +
Sbjct: 630 GGTGYEEFNYGLNLELTPYTSPDGTITLDIATTVGSLPQSGPTPGSVLIPQSYAESRIRI 689

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP- 421
             G  ++L G++ ++ +    G+P+L  IP++GALFR +   + E  + I     ++K  
Sbjct: 690 KDGQAVILGGVISNEDRNDVSGVPILKDIPVIGALFRTTERVQSERILLIIVQSHILKAE 749

Query: 422 ------VAMRDLSRPDDHYSVEDD 439
                 V + + + P   Y    +
Sbjct: 750 SDGAGGVELPESALPSGEYDRSSE 773


>gi|323388142|gb|ADX60338.1| outer membrane type III secretion porin RscC [Pseudomonas
           fluorescens]
          Length = 713

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 101/283 (35%), Gaps = 18/283 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ L++A +  V +   I ++ R  L++ G +     S           F G     
Sbjct: 320 RELISQLDVARKL-VEIDAIILDIERTQLREFGIRWGFQNSR----------FRGGVNMA 368

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   +  R  F   + ALE+      ++ P++  +  Q A            +++ 
Sbjct: 369 PGSSSQLSIEHRDRFNADIRALEQRGLATMVSNPSVLTLENQPAVIDFNRTQY---LTAG 425

Query: 302 TGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           T   ++     G      P V++     +I L +  E         A   P  R  K  T
Sbjct: 426 TETATILPITVGTSFQVVPRVITTRGNHQIHLVVDIEDGNFDESNPARTSPDVRRGKVST 485

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPF 417
              +    ++V+ G    +    +  IPLL  IP+LG ALF +S       E     TP 
Sbjct: 486 QAVMAEKRSLVVGGFHVTESTDKQSKIPLLGDIPLLGKALFSSSERQNNRRERLFILTPR 545

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
           ++   A      P +  +    A      R  +     + S++
Sbjct: 546 VIGDQADPSRYLPQEDQAELQAALKPLARRYAEHQPVIKRSDI 588


>gi|294141031|ref|YP_003557009.1| type III secretion system EscC protein [Shewanella violacea DSS12]
 gi|293327500|dbj|BAJ02231.1| type III secretion system EscC protein, putative [Shewanella
           violacea DSS12]
          Length = 491

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 108/272 (39%), Gaps = 15/272 (5%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           + G V  +     A +     +   G +Q   + +  +  L N      + + V+I ++ 
Sbjct: 222 VSGTVSNVSGPVFAADSRRNAIIVRGSSQDVTTYASLIKQLDN--KPTMIEISVSILDID 279

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               KQ+G   S +      S SF +D   + +S         + +  +F   L+ALE+ 
Sbjct: 280 ASDFKQLGVDWSASAQLGNGSVSFNSDTSSENISTV-------IGNTGNFMVKLNALEKN 332

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT-VLSP 325
           +  + L+ P++  ++   A         + T         + +   G +L  TP  +   
Sbjct: 333 SKAKVLSHPSVVTLNNVQAVLD--KNVTFYTKLEGDKVAKLESVTTGTLLRVTPRLIEES 390

Query: 326 GR--IGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           G   + L +  +  +    V+  D +P  +  +  T   L SG ++++ G ++D  +   
Sbjct: 391 GHTAVMLNLNIQDGQQSEAVSRSDPLPQVQNSEISTQAILKSGESLLIGGFVQDRDETSD 450

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             IPLL  IP+LG LFR++  + +        
Sbjct: 451 HKIPLLGDIPLLGGLFRSTEHHTQSVMRLFLI 482


>gi|262066840|ref|ZP_06026452.1| general secretion pathway protein D [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379452|gb|EFE86970.1| general secretion pathway protein D [Fusobacterium periodonticum
           ATCC 33693]
          Length = 514

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 117/310 (37%), Gaps = 37/310 (11%)

Query: 132 ADSNIRV--EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
            D  ++V  E   + +     V ++    + V  +E  + ++  +         ++  ++
Sbjct: 218 PDEVLKVLHETFGENI----KVSSLSKVNKLVVSAERDILENAIS---------IIEDID 264

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
                QV +   I ++  ++ +++GF      + +   ++             G  S   
Sbjct: 265 -KNPKQVKISSQILDISNNLFEELGFDWVYKQNVASEERNSLTAIILGKAGLNGIGSTLN 323

Query: 250 VLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           ++ +F+       T L+ LE    +   + PTL   SG+   F    + +    ++    
Sbjct: 324 IVRQFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENK 383

Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------- 353
               T     + G+++   P +     I L I  E+S+     N  ++            
Sbjct: 384 NDRHTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDINSGTYNSEG 443

Query: 354 -----RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R   T V +  G TI++ GL K   Q ++  IP+L  IPI+   F+N+   RE +
Sbjct: 444 GSKVGRALTTKVRVKDGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENS 503

Query: 409 EIFIAATPFL 418
           +++I     +
Sbjct: 504 DMYIKLKVEI 513


>gi|300310140|ref|YP_003774232.1| type II/III HrcC transmembrane protein [Herbaspirillum seropedicae
           SmR1]
 gi|300072925|gb|ADJ62324.1| type II/III HrcC transmembrane protein [Herbaspirillum seropedicae
           SmR1]
          Length = 693

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 106/290 (36%), Gaps = 32/290 (11%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G      ++  ++     +   + R+ YA      ++N L++    QV ++  I ++ R
Sbjct: 297 EGKQPPRIEADSSLNAIMIYDDIAKRDMYAA-----LINQLDVK-PQQVEIEALIVDIDR 350

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG----VLDRFSFETVLHAL 263
             L ++G +          + +          S G D  + G    + D   F   L A+
Sbjct: 351 SRLAEMGVEWGARAGVVNTTVNGT-----TTQSSGTDLPLPGATLLISDAARFYARLKAM 405

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E     R LA PT+  +   +A            +       S  T   G +L   P ++
Sbjct: 406 ESNGEARVLATPTVLTLDNVAAVLDLSQSAYVSLIGERVADMSDIT--AGTMLRVIPRII 463

Query: 324 SPG---RIGLRIQTE-----------VSEPVIGVNAGDMPSYRVRK-ADTTVELPSGGTI 368
             G   R+ L +  E            S    G  A  + +   R   +T   + +  T+
Sbjct: 464 DDGGQTRVRLEVDIEDGSLNNGNNDSGSNSSRGTGASTIAASVTRSTINTQAIIDAQQTL 523

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           ++ G   + + + K+ +PLL  +P++G LFR+   +    E     TP +
Sbjct: 524 MIGGYRAESLIRNKQKVPLLGDLPVVGGLFRSESRSNSTRERLFLITPRI 573


>gi|254422445|ref|ZP_05036163.1| Bacterial type II and III secretion system protein [Synechococcus
           sp. PCC 7335]
 gi|196189934|gb|EDX84898.1| Bacterial type II and III secretion system protein [Synechococcus
           sp. PCC 7335]
          Length = 702

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 100/263 (38%), Gaps = 20/263 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV + + + +V  +     G Q S     +  ++S        F   GG   +     
Sbjct: 447 RRQVAVNLRVIDVNLNDSDSFGSQFSFGLGDTAITQSGGIGLI-NFGVAGGALGIAR--- 502

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------T 305
              F   L A  +++  + + +PTL    GQ+A+     + +    +             
Sbjct: 503 --QFLAQLEASVQSSNAKIVTDPTLVIQEGQTAAVQLTQEVVTNITTDIETTEVGVLRTV 560

Query: 306 SVTTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADT-TVE 361
           +    D G+ L      +   G + L +   +S P    N G   +     R+  +  + 
Sbjct: 561 TFEKEDAGLNLQVQIDRIDDNGFVTLAVAPSISAPTDTFNIGTEEAVLLANRQLTSGQIR 620

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G T+VL+G++++  +     +P+L  IP+LGALFRNS       E+ +  TP ++  
Sbjct: 621 VRDGQTLVLSGIIQESDRNTVTKVPILGDIPLLGALFRNSDRENIRRELIVLLTPQVMND 680

Query: 422 VAMRDLSRPDDHYSVEDDAKAFF 444
               D S     Y   +D +   
Sbjct: 681 S---DQSVYGYGYVPSEDVQQLL 700


>gi|46447109|ref|YP_008474.1| putative component D of type II secretion pathway [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400750|emb|CAF24199.1| putative component D of type II secretion pathway [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 953

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 41/268 (15%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            QV +++ I +         G        G ++   ++F     G   S     +   ++
Sbjct: 634 RQVFIEMLILDTTITDSLTYGVDWGSRFGGGNTAGGQNFLGTGSGLVGSLTNAITNNPIV 693

Query: 252 DRF-----------------------SFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           D                         +   ++ A+   T I  +  P +      +A   
Sbjct: 694 DTVLSGDGYTAGIIGRHLTHGGLHFSTIGALVKAIHSDTKINIIMNPKIVTEDNNTAEVF 753

Query: 289 SGGQHLYKTVSSSTG-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            G    YKT S +         +    D G  L  TP + + G I L I  EV+      
Sbjct: 754 VGSTDRYKTQSIANDIGSVITNNFQFIDVGTTLRVTPLIGNNGIITLDIIQEVTNDGGNA 813

Query: 344 N-----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           N              +P     +  T V +P G  ++L+G+++    +    IP L  +P
Sbjct: 814 NPNVGNNPSVVDVNLVPVLSKSRTVTKVHVPDGFFVILSGMIQSTESRSVNRIPCLGGLP 873

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
           ++G + +       +  + I   P +V 
Sbjct: 874 LIGGISKQKSNRDSKRNLMIFIRPLIVD 901


>gi|315918572|ref|ZP_07914812.1| general secretion pathway protein D [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313692447|gb|EFS29282.1| general secretion pathway protein D [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 419

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 20/252 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            K+M  ++I G+ QV +   I ++ +D+  ++GF       S   +K   A  G + V  
Sbjct: 163 DKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEESVGN 221

Query: 242 GGDF--SVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
            G    S   ++ +FS         L  LE    ++  + P++    G    F    + +
Sbjct: 222 SGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITEEVI 281

Query: 295 YKTVSSSTG--ATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMP 349
                      +TSV     + G++L   P +     + L I  E+S+      N     
Sbjct: 282 VGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNQKKDW 341

Query: 350 SYRV-------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           ++         R   T + + +  TI++ GL +   +  +  +P LS IP LG LF++  
Sbjct: 342 NFNAQGGSKMGRSLSTRIHVKNKETILIGGLSRSTHRNTENRVPFLSDIPGLGYLFKSES 401

Query: 403 FNREETEIFIAA 414
               ET+++I  
Sbjct: 402 KKDAETDMYIKI 413


>gi|257467448|ref|ZP_05631759.1| general secretion pathway protein D [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 435

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 20/252 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            K+M  ++I G+ QV +   I ++ +D+  ++GF       S   +K   A  G + V  
Sbjct: 179 DKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEESVGN 237

Query: 242 GGDF--SVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
            G    S   ++ +FS         L  LE    ++  + P++    G    F    + +
Sbjct: 238 SGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITEEVI 297

Query: 295 YKTVSSSTG--ATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMP 349
                      +TSV     + G++L   P +     + L I  E+S+      N     
Sbjct: 298 VGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNQKKDW 357

Query: 350 SYRV-------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           ++         R   T + + +  TI++ GL +   +  +  +P LS IP LG LF++  
Sbjct: 358 NFNAQGGSKMGRSLSTRIHVKNKETILIGGLSRSTHRNTENRVPFLSDIPGLGYLFKSES 417

Query: 403 FNREETEIFIAA 414
               ET+++I  
Sbjct: 418 KKDAETDMYIKI 429


>gi|254447525|ref|ZP_05060991.1| type II and III secretion system protein [gamma proteobacterium
           HTCC5015]
 gi|198262868|gb|EDY87147.1| type II and III secretion system protein [gamma proteobacterium
           HTCC5015]
          Length = 506

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 96/256 (37%), Gaps = 24/256 (9%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           ++ +   G  QV ++ T+ E+      Q G       +    +   +        S    
Sbjct: 234 VDRVVERGRRQVLIEATVVEIDLSQSYQAGVDWQRVMNGGEWTLQQSMTKPSLAASPMTL 293

Query: 245 FSVKGVLDRFSFE-TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----V 298
            +      R S     +  LE+   +   + P + A++ Q +      + +Y T      
Sbjct: 294 LAQHEKQSRDSVTRAAVTLLEQFGDVNVHSRPRIVALNNQPSLLKVIDKRVYFTLDVQNT 353

Query: 299 SSSTGATS------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------- 344
           ++S GAT+      + T   G  +  TP V     + L ++  +S     V+        
Sbjct: 354 TASGGATTSTVETHINTLPVGFTMSVTPFVTQSD-VTLSVRPSLSRITRFVDDPSPALAA 412

Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                 +P   VR+ +T + L    T ++ GL+++   +    +P+LS+IP LG LF+  
Sbjct: 413 EGIVSRVPEVEVREMETLLRLDGEQTALIGGLMQERRSEEHYAVPVLSRIPWLGELFKGR 472

Query: 402 RFNREETEIFIAATPF 417
                ++E+ I     
Sbjct: 473 EERWNKSELVILLRAR 488


>gi|171915470|ref|ZP_02930940.1| type II and III secretion system protein:NolW-like
           [Verrucomicrobium spinosum DSM 4136]
          Length = 896

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 100/252 (39%), Gaps = 26/252 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             Q+ L   I E         G     T  S G     A       V E  DF+  G ++
Sbjct: 518 PRQILLTAVIGEFTLGNDFSFGVDWLHTLESVGKDGLIAGALNTSGV-EPVDFTKFGGIE 576

Query: 253 RFS--------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
            F+                  L  LE+      L +PT+TA++ + A+   G        
Sbjct: 577 DFAAPQGLAVYGHIGKHLNVFLRTLEQNKRFHVLQKPTVTALNHEEANIFIGQDLAIAGQ 636

Query: 296 ------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGD 347
                  TV+ ++ A++       + L  TP + +   + L  +   ++      ++   
Sbjct: 637 TLTTGGTTVNGASVASTTDYVKVRLELRITPHIFANDEVRLDFEQTNNDVSGFTEISGNR 696

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P+  V+    T+ +P+  T++L GL+ +   + K G+P L ++P+L  LF N+  ++E 
Sbjct: 697 VPNLSVQGMRNTIIVPNRSTVLLGGLITERDSKNKNGLPFLVRVPVLKHLFGNTSNSKER 756

Query: 408 TEIFIAATPFLV 419
            E+ I   P ++
Sbjct: 757 RELMIFVQPQIL 768


>gi|300771988|ref|ZP_07081859.1| type II general secretion pathway D protein [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761374|gb|EFK58199.1| type II general secretion pathway D protein [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 624

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 98/244 (40%), Gaps = 18/244 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
             V ++VT+ ++ +    + G +  +  S   +G S   A DF     S     S  G  
Sbjct: 380 PMVLIEVTLLDINKGNTVKTGIKMGVADSIPQTGGSLFPALDFTFGAGSINRFLSFLGKN 439

Query: 252 DRFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301
           + F+       F   L ALE    +   + P L+ ++G  A  + G +  YKT + +   
Sbjct: 440 NAFNLGRVTPNFYVTLSALEANKNVEMRSIPKLSTLNGHQAKLSIGSKRYYKTTTQNVIP 499

Query: 302 ------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                       T  +  + +   P +    +I L+I  ++S+ V  V  G  P     K
Sbjct: 500 SLQTTTVTTEQFTPVEANMNIDIKPVISGDDQITLKITVDISDFVGTVKDGQPPPTSTSK 559

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            ++ +   +   IVL G+ + +      G+PLLS+IP+L  LF +      +    +   
Sbjct: 560 FESIIRARNEDMIVLGGIERTENSSSGSGVPLLSRIPVLKWLFSSREKTTNKVVSVVFIK 619

Query: 416 PFLV 419
           P ++
Sbjct: 620 PTII 623


>gi|46562147|ref|YP_009152.1| type III secretion system protein YscC family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46447684|gb|AAS94350.1| type III secretion system protein, YscC family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 624

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 106/289 (36%), Gaps = 25/289 (8%)

Query: 154 IQDSQRAVELSETFLSQS--GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            QD Q+   +++  ++        Y     + V+  L+   E  V +   I ++  +  +
Sbjct: 252 AQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDLDRPVEL-VEIHAAIVDIDTNFKR 310

Query: 212 QIGFQHSIT-----GSSSGPSKSFAAD------FGGKFVSEGGDFSVKGVLDRFSFETVL 260
            +G  +  T       + G   S   D        G     G   S    +    F   +
Sbjct: 311 DLGVTYQATVGKDQRWAGGADVSTGTDKFTPLPVPGVPQGSGLTLSTIYTMGSDYFLARI 370

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
           +ALE+    R L  P++  +    A+  +   +  +       A  +   + G VL  TP
Sbjct: 371 NALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQVQGYQ--AVDLFKVEAGTVLRVTP 428

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---------AGDMPSYRVRKADTTVELPSGGTIVLA 371
            +++       I+  VS      N            +P  +  K +T   + +G ++++ 
Sbjct: 429 HIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIPPIKQTKINTQAIIGAGQSLLIG 488

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G   +      +G+P+L  IP+LG LF+      +  E  I  TP +V+
Sbjct: 489 GYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRMERLILITPKVVR 537


>gi|218887514|ref|YP_002436835.1| type III secretion outer membrane pore, YscC/HrcC family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758468|gb|ACL09367.1| type III secretion outer membrane pore, YscC/HrcC family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 666

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 110/307 (35%), Gaps = 27/307 (8%)

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----------QHSITGSSSG 225
           Y     + V+  L+   E  V +   I ++  D  + +G           + +  G  S 
Sbjct: 300 YRMPYYESVIGDLDKPVEL-VEIHAAIVDIDSDYKRDLGVTYQGTAGSGQRWAGGGDFST 358

Query: 226 PSKSF-AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
            + +F      GK +  G   S    +    F   + ALE+    R L  P++  +    
Sbjct: 359 GTDAFPTLPSPGKPLGNGLTLSTIYTMGSDYFLAQVTALEKNGEARMLGRPSVLTVDNVQ 418

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV--LSPGRIGLRIQTEVSEPVIG 342
           A+  +   +  +       A  +   + G VL  TP +     G   +++   V +    
Sbjct: 419 ATLENTSTYYIEVQGYQ--AVDLFKVEAGTVLRVTPHIIRNEDGGQSIKLVVSVQDDQND 476

Query: 343 VNAGD-------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            ++         +P  +  K +T   +  G ++++ G   +       GIP+L  IP+LG
Sbjct: 477 NSSATSTSNSTAIPPVKQTKINTQAIVGGGQSLLIGGYYYEQKSTTDTGIPILMDIPVLG 536

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
            LF+ +    +  E  I  TP +V+   + +L    +        ++      N+   P 
Sbjct: 537 HLFKTNSKTSKRMERLILITPKVVR---LNELPATPERVDDPSFHRSATQGDYNEKV-PA 592

Query: 456 EASEVEG 462
            A    G
Sbjct: 593 PAPRRSG 599


>gi|284006883|emb|CBA72151.1| type III secretion component protein SctC [Arsenophonus nasoniae]
          Length = 598

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 91/243 (37%), Gaps = 8/243 (3%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ L+      + + ++I +V  D L ++G    + G  +G              + 
Sbjct: 266 QRLIHSLDKPTAR-IEVALSIIDVNADNLSELGIDWGV-GLKAGQHHQINIASTLTQAAS 323

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
               S+            +  L+     + +++PTL       A       +  K   + 
Sbjct: 324 PVLGSLLDKQGLNYLVAKVSLLQSQGIAQVVSKPTLLTQENTQAIIDHNETYYIKV--NG 381

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MPSYRVRKAD 357
                +    YG +L  TP V+  G    I L +  E        +  D +P+      D
Sbjct: 382 ERVAELKGITYGTLLQMTPRVIQIGDKPEIHLVLHIEDGNQKPNSSGVDGIPTINRTIID 441

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T   +  G ++V+ G+ +D++ +    +PLL  IP+LGALFR+               P 
Sbjct: 442 TVARVEQGQSLVIGGIFRDEVIKTSRKVPLLGDIPLLGALFRSQSNQTRRVVRIFIVEPK 501

Query: 418 LVK 420
           ++ 
Sbjct: 502 IID 504


>gi|86607978|ref|YP_476740.1| type IV pilus secretin PilQ [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556520|gb|ABD01477.1| type IV pilus secretin PilQ, putative [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 696

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 134/376 (35%), Gaps = 67/376 (17%)

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH-LEMTLRRFIADSNIRVEM 140
              +T+++     G   +++          ++  +  D+A  LE  L      +   V+ 
Sbjct: 342 RRGQTVFVGQNLPGVTGILVRN------YRVNQAVATDLASRLEEVLNAVAPGAQFVVDE 395

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            ++++ + G   + Q    A ++++  + +                        QV + +
Sbjct: 396 RTNSITVIGN--SRQQDIAAAQIAQLDVRR-----------------------RQVLISL 430

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------EGGDFSVK 248
              ++R D  + +         +        A+FGG+ ++             G   S+ 
Sbjct: 431 RAVDIRLDKNESLSVNLGGASGNFALGTLGDANFGGRPLNQPAGSSVSSIGPAGPSGSIT 490

Query: 249 GVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           G+ +  +         + +  +    + L +P +    G S+  +          + +  
Sbjct: 491 GIFNTLNRLQQSLALRVQSAIQNGTGKILTDPKVVVADGGSSRISIATSVPVNVETITIP 550

Query: 304 ---------ATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGD------ 347
                       +   D GV+L      +   G + L IQ E+S PV     G       
Sbjct: 551 QGENQPPVVTQRLQREDAGVILDVSEVRIDDNGFVTLTIQPEISIPVPSQILGGGDFAGI 610

Query: 348 -MPSYRVRKAD-TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            + +   R+   + + L  G T ++AGL++D      + +P L  +P+LGALFR+   N 
Sbjct: 611 LLFNIDRRQLQASQLRLRDGQTFIIAGLIQDRDIVDVQKVPFLGDLPLLGALFRSQSVNN 670

Query: 406 EETEIFIAATPFLVKP 421
           E  E+    TP+++  
Sbjct: 671 ERNEVVFMLTPYIMDD 686


>gi|313681848|ref|YP_004059586.1| pilus (msha type) biogenesis protein mshl [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154708|gb|ADR33386.1| pilus (MSHA type) biogenesis protein MshL [Sulfuricurvum kujiense
           DSM 16994]
          Length = 533

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 101/259 (38%), Gaps = 34/259 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------ITGSSSGPS 227
              ++ L    + QV + V +  V        G   S              +     G  
Sbjct: 232 DTYLDDLQKKMQTQVLIDVKMYSVIFSDASSTGIDWSQLYALQNIDLTFDYVNSKDVGKF 291

Query: 228 KSFAADFGGKFVSEGGD------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
            S   + G  F   G D       SV  +  + S   V+  L+    + +++ P +  ++
Sbjct: 292 TSTNLNTGTSFDEYGTDSVGRTGASVFRLGAKGSLNEVIKFLKTQGDVYSISNPKILTLN 351

Query: 282 GQSASFTSGGQHLYKTVSSSTGATS---------VTTHDYGVVLHFTPTVLSPGRIGLRI 332
            Q A  T+G +  YKT SS++   +         V++   GV+L  TP +   G I LRI
Sbjct: 352 NQPALITAGTELFYKTKSSTSTTAASTTTSENEIVSSVFSGVLLDITPEISKDGSITLRI 411

Query: 333 QTEVSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
              +SE    +N+ +      P    R+  + + +  G  ++L GL+          +PL
Sbjct: 412 NPSISETASVINSSNEQRSMPPDLSRRQMSSVISVQDGSRVILGGLINTKNVNDTNKVPL 471

Query: 388 LSKIPILGALFRNSRFNRE 406
           L  IP+LG LF+    N++
Sbjct: 472 LGDIPVLGYLFKKEGLNKK 490


>gi|120586851|ref|YP_961196.1| YscC/HrcC family type III secretion outer membrane protein
           [Desulfovibrio vulgaris subsp. vulgaris DP4]
 gi|120564265|gb|ABM30008.1| type III secretion outer membrane pore, YscC/HrcC family
           [Desulfovibrio vulgaris DP4]
          Length = 624

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 106/289 (36%), Gaps = 25/289 (8%)

Query: 154 IQDSQRAVELSETFLSQS--GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            QD Q+   +++  ++        Y     + V+  L+   E  V +   I ++  +  +
Sbjct: 252 AQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDLDRPVEL-VEIHAAIVDIDTNFKR 310

Query: 212 QIGFQHSIT-----GSSSGPSKSFAAD------FGGKFVSEGGDFSVKGVLDRFSFETVL 260
            +G  +  T       + G   S   D        G     G   S    +    F   +
Sbjct: 311 DLGVTYQGTVGKDQRWAGGADVSTGTDKFTPLPVPGVPQGSGLTLSTIYTMGSDYFLARI 370

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
           +ALE+    R L  P++  +    A+  +   +  +       A  +   + G VL  TP
Sbjct: 371 NALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQVQGYQ--AVDLFKVEAGTVLRVTP 428

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---------AGDMPSYRVRKADTTVELPSGGTIVLA 371
            +++       I+  VS      N            +P  +  K +T   + +G ++++ 
Sbjct: 429 HIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIPPIKQTKINTQAIIGAGQSLLIG 488

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G   +      +G+P+L  IP+LG LF+      +  E  I  TP +V+
Sbjct: 489 GYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRMERLILITPKVVR 537


>gi|320539812|ref|ZP_08039471.1| putative predicted fimbrial transporter [Serratia symbiotica str.
           Tucson]
 gi|320029998|gb|EFW12018.1| putative predicted fimbrial transporter [Serratia symbiotica str.
           Tucson]
          Length = 403

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 5/183 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L   I  +  + L ++G +  +             +F      +    S    L R 
Sbjct: 183 QVQLASYIVTINSENLHELGVRWGLAADERPAQPLRLDNFNVGLTQQKSTLSAGFHLARL 242

Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           S       L ALE+   +  +A P L     Q+AS   G +  Y+  S ++GATSV   +
Sbjct: 243 SGRLLNLELTALEQENRVEIIANPRLLTAHMQTASIKQGTEIPYEVSSGASGATSVEFKE 302

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SYRVRKADTTVELPSGGTIV 369
             + +  TP VL  GRI L +    + P   V+ G+    +   ++  T + +  G TIV
Sbjct: 303 AVLGMEVTPRVLPDGRITLTLYISQNMPGRSVSRGEGEALTIDKQEIKTQITVKDGETIV 362

Query: 370 LAG 372
           L G
Sbjct: 363 LGG 365


>gi|238785761|ref|ZP_04629734.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia bercovieri ATCC 43970]
 gi|238713344|gb|EEQ05383.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia bercovieri ATCC 43970]
          Length = 504

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 12/244 (4%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-EGGDFSVKGVL 251
             Q+ + VTI +V    + Q+G   S + S  G   SF +  G         D     + 
Sbjct: 265 PIQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSGSGSSGTGKNSADGFSTVIG 324

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D  +F   L+AL++ +  R L++P++  ++   A         + T         + +  
Sbjct: 325 DTSNFMVRLNALQKNSRARVLSQPSVVTLNNIQAVLD--KNVTFYTKLQGDKVAKLESIT 382

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQ-TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
            G +L  TP ++       + L +   +  +     N+  +P  +     T   L  G +
Sbjct: 383 SGSLLRVTPRMIDADGEKEVLLNLNIQDGQQQAPISNSEPLPEIQNSDISTQATLRVGQS 442

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           ++L G ++D   + +  IPLL  IP+LG LFR++               FL+K V +   
Sbjct: 443 LLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTDKQSHS-----VVRLFLIKAVPVNTG 497

Query: 428 SRPD 431
              D
Sbjct: 498 ELYD 501


>gi|238897391|ref|YP_002923068.1| type III outer membrane secretin precursor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465146|gb|ACQ66920.1| type III outer membrane secretin precursor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 496

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 118/310 (38%), Gaps = 41/310 (13%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY-------------ANSSSKKVMNL--- 187
            V L G+V  ++D      ++      SG++Q              A     +V+N+   
Sbjct: 198 KVTLPGLVSVLRDMNSQNTIAIGENKTSGKDQSLGLPLFSADPRQNALIVRDRVVNMPIY 257

Query: 188 ------LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
                 L++    ++ + V I +V    + Q+G     + S  G   SF   F     S+
Sbjct: 258 ASLVKQLDVR-PIEIEISVAIIDVDASDINQLGINWEASASLGGGKVSFNKGF---ISSD 313

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G FS    +    F   ++ALE+ +  R L+ P++  ++   A         + T    
Sbjct: 314 DGGFS---TVVGNDFMVRINALEQHSKARVLSRPSIVTLNNIQAVLD--KNVTFYTKLQG 368

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
                + +   G ++  TP ++         + L IQ     P I      +P     + 
Sbjct: 369 DKVAKLDSRTTGTLMQVTPRMIKDKGKEDVLLNLDIQDGQQRPSINNTTEILPQIDNSQI 428

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T   L  G  ++L G ++D  +  K  IPLL  IP++G LFR+S               
Sbjct: 429 TTQAVLKPGQNLLLGGFIQDSQKASKHKIPLLGDIPLIGGLFRSSSKQSSS-----VVRL 483

Query: 417 FLVKPVAMRD 426
           FL+K V +++
Sbjct: 484 FLIKAVPVKN 493


>gi|238757842|ref|ZP_04619024.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia aldovae ATCC 35236]
 gi|238703827|gb|EEP96362.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia aldovae ATCC 35236]
          Length = 484

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 124/318 (38%), Gaps = 30/318 (9%)

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
            +++   ++ L    R     +N          +      +    Q AV + +  ++ +G
Sbjct: 187 TVVVPGIVSVLRDMNRGSAPTTNTSSPATQGLPM-----FSADPRQNAVIVRDRSVNMAG 241

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
                    +K+++ L+      + + VTI +V    + Q+G   S   S  G + SF  
Sbjct: 242 --------YRKLISELDQR-PQMIEISVTIIDVDAGDISQLGIDWSAAVSMGGGTLSF-- 290

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
              G   + GG FS   + +  SF   L ALE+ +    L++P++  ++   A       
Sbjct: 291 --NGPDSNTGGGFSTV-ISNTPSFMARLVALEKNSHAYILSQPSVVTLNNIQAVLD--KN 345

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-M 348
             + T         + +   G +L  TP +L       I L +  +  +    ++  + +
Sbjct: 346 ITFYTKLEGDKVAKLESITTGSLLRVTPRLLEDKGKQNIMLSLNIQDGQQNAPISQSEPL 405

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  +  +  +   L +G +++L G  +D   Q++  IPLL  IPI+G LFR+        
Sbjct: 406 PQVQNSEIASQATLQAGQSLLLGGFKQDKQVQVQNKIPLLGDIPIIGHLFRSDINQTNS- 464

Query: 409 EIFIAATPFLVKPVAMRD 426
                   FL+K     +
Sbjct: 465 ----VIRLFLIKATVAAN 478


>gi|171912205|ref|ZP_02927675.1| general secretion pathway protein D [Verrucomicrobium spinosum DSM
           4136]
          Length = 759

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 31/257 (12%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-------------SITGSSSGPSKSFAADFGG--- 236
             Q+ L   I E       + G                     +S    +   D      
Sbjct: 446 PPQIILSAIIGEFTTGKDFRFGLDWVRTLEQVNDNLVIGGINKTSTTETNAMTDLAALGN 505

Query: 237 --KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
              F+      +V G + +      L+ LE +     L  P +T ++ + A+ ++G Q  
Sbjct: 506 VADFLPALQGLTVYGKIGK-HLNVFLNTLEESDRFHVLQRPYVTTLNHKKATISTGQQLA 564

Query: 295 YKTVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLR-IQTEVSEPV-IG 342
               + S+G           ++       + L   P +     + L  +Q  +       
Sbjct: 565 IPGQTYSSGIGSDPDTNGFVSNTQYIPAELKLDIVPHIYDKNEVKLEFVQQNLDIASYTT 624

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           ++   +P+   +    TV +P+G TI+L GL+ +  +  K G+P+LS+IP++  LF ++ 
Sbjct: 625 ISGNQVPNLSTQTLSNTVVVPNGATIILGGLITERDRNNKSGVPVLSRIPLVKHLFGSTA 684

Query: 403 FNREETEIFIAATPFLV 419
             +E  E+ I   P +V
Sbjct: 685 KTKERRELMIFVQPIIV 701


>gi|317061875|ref|ZP_07926360.1| general secretion pathway protein D [Fusobacterium sp. D12]
 gi|313687551|gb|EFS24386.1| general secretion pathway protein D [Fusobacterium sp. D12]
          Length = 419

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 91/253 (35%), Gaps = 22/253 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGG 236
            K++  ++I G+ QV +   + ++ +D+  ++GF       S   +    S       G 
Sbjct: 164 DKIIQEIDIEGK-QVKVYSQVLDISKDLFHELGFDWLYEKPSKQKNQFSVSVLGEESAGN 222

Query: 237 KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                G  +++       +         LE    ++  + P +    G +  F    + +
Sbjct: 223 SGPVLGSKWNLIRQFSNAAEVLGLSFKLLEAKQDLKITSSPAILIAHGNTGEFKITEEVI 282

Query: 295 YKTVSSSTGA--TSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVI 341
                       TSV     + G++L   P +     + L I  E+S+            
Sbjct: 283 VGEKKEKKKGEHTSVEPIFKEAGLILKVVPYIHQDSSVTLDISLELSDFKYRQTNQKKDW 342

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             N+        R   T + + +  T+ + GL +   +  +  +P L  IP +G LFR+ 
Sbjct: 343 NFNSQGGSKIG-RSLSTRIHVKNKETVFIGGLSRFTNRNTENKVPFLGDIPGIGHLFRSE 401

Query: 402 RFNREETEIFIAA 414
                ETE++I  
Sbjct: 402 SKKESETEMYIKI 414


>gi|308095376|ref|ZP_05905407.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus Peru-466]
 gi|308086743|gb|EFO36438.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus Peru-466]
          Length = 525

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 87/240 (36%), Gaps = 36/240 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  +    + ++G +   T  +   +              
Sbjct: 288 REIIESLDIP-VKQVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 346

Query: 230 -------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAI 269
                                 +      +     F V  +      +  L AL++ +  
Sbjct: 347 YEGGGDGEGEEGGVGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKA 406

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L   + + A    G +  Y   SSS+GATSVT     + L  TP +    R+ 
Sbjct: 407 EIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNRLV 465

Query: 330 LRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  I    + +PL
Sbjct: 466 LDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPL 525


>gi|257464370|ref|ZP_05628747.1| general secretion pathway protein D [Fusobacterium sp. D12]
          Length = 435

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 91/253 (35%), Gaps = 22/253 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGG 236
            K++  ++I G+ QV +   + ++ +D+  ++GF       S   +    S       G 
Sbjct: 180 DKIIQEIDIEGK-QVKVYSQVLDISKDLFHELGFDWLYEKPSKQKNQFSVSVLGEESAGN 238

Query: 237 KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                G  +++       +         LE    ++  + P +    G +  F    + +
Sbjct: 239 SGPVLGSKWNLIRQFSNAAEVLGLSFKLLEAKQDLKITSSPAILIAHGNTGEFKITEEVI 298

Query: 295 YKTVSSSTGA--TSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVI 341
                       TSV     + G++L   P +     + L I  E+S+            
Sbjct: 299 VGEKKEKKKGEHTSVEPIFKEAGLILKVVPYIHQDSSVTLDISLELSDFKYRQTNQKKDW 358

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             N+        R   T + + +  T+ + GL +   +  +  +P L  IP +G LFR+ 
Sbjct: 359 NFNSQGGSKIG-RSLSTRIHVKNKETVFIGGLSRFTNRNTENKVPFLGDIPGIGHLFRSE 417

Query: 402 RFNREETEIFIAA 414
                ETE++I  
Sbjct: 418 SKKESETEMYIKI 430


>gi|261884996|ref|ZP_06009035.1| type II and III secretion system protein [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 203

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 17/187 (9%)

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHD 311
            VL+ LE     + ++ P +  ++  +A  T G    Y+    +T   +       T   
Sbjct: 3   GVLNFLETKGRTKVVSSPKIMTMNNHNALITVGDNINYRVQEDTTNTNTQTAVSNTTYTQ 62

Query: 312 Y----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTV 360
           Y    G++L+  P V   GRI LRI   +S    G +           P    +K  T V
Sbjct: 63  YSIFIGILLNLLPEVSDDGRIMLRINPSLSSFKYGDDNRRQANIREIAPDTLQKKLSTVV 122

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++ SG TI+L GL+ +   +    +P+L  IP+ G LF++++ +   TE+    TP ++ 
Sbjct: 123 QVNSGDTIILGGLIGETKGKDNTSVPVLGDIPLFGNLFKSTKDSVSTTELIFIITPKVIN 182

Query: 421 PVAMRDL 427
               + +
Sbjct: 183 NETPKQI 189


>gi|257453318|ref|ZP_05618617.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R]
 gi|317059850|ref|ZP_07924335.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R]
 gi|313685526|gb|EFS22361.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R]
          Length = 435

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 99/253 (39%), Gaps = 22/253 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            K+M  ++I G+ QV +   I ++ +D+  ++GF       S   +K   A  G + V  
Sbjct: 179 DKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEESVGN 237

Query: 242 GGDF--SVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
            G    S   ++ +FS         L  LE    ++  + P++    G    F    + +
Sbjct: 238 SGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITEEVI 297

Query: 295 YKTVSSSTG--ATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVI 341
                      +TSV     + G++L   P +     + L I  E+S+            
Sbjct: 298 VGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNHKKDW 357

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             N+        R   T + + +   I++ GL +   +  +  +P LS IP LG LF++ 
Sbjct: 358 NFNSQGGSKIG-RSLSTRIHVKNKEMILIGGLSRFTRRNTENKVPFLSDIPGLGYLFKSE 416

Query: 402 RFNREETEIFIAA 414
                ET+++I  
Sbjct: 417 SKKDAETDMYIKI 429


>gi|189424524|ref|YP_001951701.1| type II and III secretion system protein [Geobacter lovleyi SZ]
 gi|189420783|gb|ACD95181.1| type II and III secretion system protein [Geobacter lovleyi SZ]
          Length = 769

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 120/328 (36%), Gaps = 40/328 (12%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------EDQVTLKV 200
              D+++A  L  T L         ++++  V +  ++              E +V L V
Sbjct: 276 NHLDAKKAANLIRTMLQVRRLYINEDANALVVRDTSDVTDVIEKILEAHDLPEAEVVLDV 335

Query: 201 TIAEVRRDILKQIGF---QHSITGSSSGPSKSFAADFGGKFVSEGG-------------- 243
            + E+       +G     + +   +  PS    A       S                 
Sbjct: 336 EVIEISDKNAHNVGLLLSNYDVQLGAFSPSNELLATTLKDTTSTTSTTVTTDATIKNLVK 395

Query: 244 DFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            FS+       +      +  +  T    L+ P +   + + A F  G +    T + +T
Sbjct: 396 AFSINSFGGYVTVPNAQYNFGKTLTNGEVLSNPKIRVKNKEKAKFNVGTRVPITTTTMAT 455

Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYR 352
                  +V   D GV ++  PT+     + +++  EVS  +     G       + +  
Sbjct: 456 TGTTSQVNVQYVDVGVKVNAEPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTIG 515

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  DT + L  G T V+ GL+       K+ I LL  IP++G L  NS+ + ++TE+ +
Sbjct: 516 TRNLDTVLSLKDGETSVIGGLISHSNSDSKQKIFLLGDIPLIGPLLSNSKTDNDKTELIL 575

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           A TP LV+ V ++           EDD 
Sbjct: 576 AITPRLVRGVTVQPRKVTSFISGKEDDP 603


>gi|326423830|ref|NP_760303.2| type IV pilus biogenesis protein PilQ [Vibrio vulnificus CMCP6]
 gi|319999200|gb|AAO09830.2| Type IV pilus biogenesis protein PilQ [Vibrio vulnificus CMCP6]
          Length = 594

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 108/282 (38%), Gaps = 46/282 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++N L+I    QV ++  I  V    L ++G +   T  +   +              
Sbjct: 313 REIINSLDIP-VKQVQIEARIVTVNEGNLDELGVRWGFTSINGSTTVGGSIENNLATIGL 371

Query: 230 -----------------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETV 259
                                           +      +     F V  +      +  
Sbjct: 372 YNAGSGSGSGDSGSGGSGSEGGSASIDDFLNVNLAATSANASSIAFQVAKLGSDLLLDLE 431

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+R +    ++ P L   + + A    G +  Y   SSS+GAT+V+     + L  T
Sbjct: 432 LSALQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVT 490

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  ++    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 491 PQITPDNRLVLDLSVTQDRPGEIVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 550

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR S  N  + E+ I  TP ++
Sbjct: 551 ITNTTDKVPLLGDLPLLGALFRRSYENVGKRELLIFVTPKVI 592


>gi|37681174|ref|NP_935783.1| type IV pilus (Tfp) assembly protein PilQ [Vibrio vulnificus YJ016]
 gi|37199925|dbj|BAC95754.1| type IV pilus (Tfp) assembly protein PilQ [Vibrio vulnificus YJ016]
          Length = 594

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 108/282 (38%), Gaps = 46/282 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++N L+I    QV ++  I  V    L ++G +   T  +   +              
Sbjct: 313 REIINSLDIP-VKQVQIEARIVTVNEGNLDELGVRWGFTSINGSTTVGGSIENNLATIGL 371

Query: 230 -----------------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETV 259
                                           +      +     F V  +      +  
Sbjct: 372 YNAGSGSGSGDSGSGGSGGEGGSASIDDFLNVNLAATSANASSIAFQVAKLGSDLLLDLE 431

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+R +    ++ P L   + + A    G +  Y   SSS+GAT+V+     + L  T
Sbjct: 432 LSALQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVT 490

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  ++    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 491 PQITPDNRLVLDLSVTQDRPGEIVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 550

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR S  N  + E+ I  TP ++
Sbjct: 551 ITNTTDKVPLLGDLPLLGALFRRSYENVGKRELLIFVTPKVI 592


>gi|158334571|ref|YP_001515743.1| secretion system protein [Acaryochloris marina MBIC11017]
 gi|158304812|gb|ABW26429.1| secretion system protein [Acaryochloris marina MBIC11017]
          Length = 682

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 112/286 (39%), Gaps = 29/286 (10%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEG 242
           ++  +++  + QV + V   +V     K          + S G      A+  G   S  
Sbjct: 399 LLTRMDVR-QRQVAINVKFIDVNLLKGKLSNADLQFRANDSLGIGFRPDANGRGGLTSIF 457

Query: 243 GDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFT------SGG 291
           G  +V  V         +F   L    +    + L  PTL    G SA         +G 
Sbjct: 458 GSGTVPIVGSGLFTLTETFLGNLFVSIQNNDAKILTNPTLLVQEGSSAQVNLTEQVFTGF 517

Query: 292 QHLYKTVSSSTGATSVTT------HDYGVVLHFTP-TVLSPGRIGLRIQTEVSEP----- 339
                +  S+ GAT+ +T       + GV+L+     +   G + L +  EVS       
Sbjct: 518 VQRVSSSGSTAGATTDSTSTEPNIQNAGVILNVVVDHIDDNGFVTLNLSPEVSSLSGRTF 577

Query: 340 VIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           V  ++       + R+ +T  V L  G TIVL G+++D  +     +P+L  IP+LG LF
Sbjct: 578 VDALSGDTAFLLQQRRVETGKVRLRDGQTIVLTGIIQDQDRVDVSKVPILGDIPLLGRLF 637

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           R     R+ +E+ +  TP +V      D +     Y+  ++++   
Sbjct: 638 RRENKTRQRSELVVLVTPQIVDDS---DQTTYGYRYTPGEESQKLL 680


>gi|15805800|ref|NP_294498.1| general secretion pathway protein D [Deinococcus radiodurans R1]
 gi|6458483|gb|AAF10350.1|AE001932_2 general secretion pathway protein D, putative [Deinococcus
           radiodurans R1]
          Length = 740

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 165/430 (38%), Gaps = 47/430 (10%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL-VSD 73
            L ++     ++ P+ +    V+N +  ++     +   +++   +     VQ V  + +
Sbjct: 334 ALLAAQYPTLRVTPVGQTGQLVLNGAQAQLDTALALLEQVDRPAPVAESRTVQRVFQLVN 393

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
            +  +V      T+          ++     +   + N+ +    D       +   + +
Sbjct: 394 ASAEEVKATLEGTL--------ARDLTA-DSNNDVLPNVPVTAT-DANGNTTVVS--VPN 441

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE---TFLSQSGRNQYANSSSKKVMNLLNI 190
           +  +              +T  ++Q+A  +++     L   G  +     ++ V  L  +
Sbjct: 442 ALGKTANQGTANAQAQTAQTPANTQQATLIADKRTNSLIVRGTPEQVAQVAELVPQLDQV 501

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               Q+ ++V I EV    L+ +G     T      + S               F+    
Sbjct: 502 V--PQINVQVRIQEVNERALQSLGLNWRATFGGFNVAVSGGTGLAAT-------FNPTQS 552

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQS----------------ASFTSGGQHL 294
              F+    L ALE     R + +  +T  SGQ                 AS  SGG+  
Sbjct: 553 FLGFNIFPTLTALETQGLTRRVYDGNVTMQSGQRSLSATGGAQNASSGAAASVKSGGRLE 612

Query: 295 YKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350
               S++     V   DYG+ L F +P V   G I LRI+ +V++P   + A  +P+   
Sbjct: 613 INIPSAAGNI--VRQIDYGLNLDFFSPQVAPDGTITLRIRGQVNQPATAITADSLPNLID 670

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +   +A +T+   +G TI+++GLL       + G+P LS +P +GA F   R  + ++++
Sbjct: 671 FTNSEAQSTITFKNGQTILMSGLLGSTETTNRSGVPFLSSLPGVGAAFGEKRTEKTQSQL 730

Query: 411 FIAATPFLVK 420
            +  T  +VK
Sbjct: 731 LVIITGTVVK 740


>gi|282890888|ref|ZP_06299405.1| putative type III secretion protein SctC [Parachlamydia
           acanthamoebae str. Hall's coccus]
 gi|281499242|gb|EFB41544.1| putative type III secretion protein SctC [Parachlamydia
           acanthamoebae str. Hall's coccus]
          Length = 955

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 115/326 (35%), Gaps = 60/326 (18%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---------------------------------- 219
            QV +++ I +   D     G                                       
Sbjct: 623 RQVFIEMLILDSSLDDSLNYGVNWGTRFGGGDTAGSQAFLSSASTLPGALDTTGIANTNG 682

Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
             TG    P+ +  A   G  +   G     G L   SF  ++ A+   T+   +  P +
Sbjct: 683 ISTGQILTPNANTLARTPGYNLGIVGQTVSVGNLTFQSFGALVKAIHDKTSTNIVMNPKI 742

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTG-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            A    +A    G    Y+T S S        T+    + G  L  TP + +   + L I
Sbjct: 743 LAEDNVTAEIFVGENTQYQTQSISNDQGSVITTNFEYRNIGTTLKITPFLGNNDIVTLEI 802

Query: 333 QTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           + EVS      NA  +      P+ R+ +  T V +P    +V++G+++D   + +  +P
Sbjct: 803 RQEVSSVASTTNAQALNNITPGPTTRLSRTTTRVHVPDKYFLVISGMVQDQETRRRVSVP 862

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD---HYSVE----- 437
            L  +P++GA F +     E+  + I   P ++     +++L++       Y  E     
Sbjct: 863 CLGGLPVIGAAFSDKNVTDEKRNLMIFIRPEIIDTEEEVQNLTKHQQDLFRYKCETKRSW 922

Query: 438 ----DDAKAFFFNRVNKIYGPKEASE 459
               D+A  FF  R    Y   EA E
Sbjct: 923 KYEVDEALDFFNLRSTNKYEACEACE 948


>gi|90410268|ref|ZP_01218284.1| general secretion pathway protein D precursor [Photobacterium
           profundum 3TCK]
 gi|90328509|gb|EAS44793.1| general secretion pathway protein D precursor [Photobacterium
           profundum 3TCK]
          Length = 406

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 110/282 (39%), Gaps = 12/282 (4%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVT 201
             VL    +   + Q A  +       +     + S   ++ NL+        QV +   
Sbjct: 131 QAVLTAYSKNTGEMQTAYSVITLPNINAMIVTGSPSQLTQIDNLIKRVDVRRKQVLIDAV 190

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           + + R    + IG    +    +G           K   +GG+     + D+     ++ 
Sbjct: 191 VMDTRLGDSESIGVSLDVLLEGAGFRLISNPVSSIKESFKGGNI----IYDKGDVSALVT 246

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----VTTHDYGVVLH 317
           A+ +    + L++P L  +  +  S   G    +   + ++   S    +   + G+ L 
Sbjct: 247 AITQNQNTKLLSKPYLLVMDREKGSINVGQNVPFLVSTETSNNGSLVQKIERQNVGLGLS 306

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P ++    + L I    S       A D+ +   R+ +T V++  G +I+L GL+ D+
Sbjct: 307 VVPHIV-NDSVVLGINQTSSSVSDSDIASDIIT-NNREINTVVQVLDGQSIILGGLVSDE 364

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            ++ + G+PLL  IP +G LFR +      +++ +     ++
Sbjct: 365 SRKSESGVPLLKDIPWIGGLFRTTSDKSVSSQMSVLIKVTVI 406


>gi|149200052|ref|ZP_01877077.1| ComE [Lentisphaera araneosa HTCC2155]
 gi|149136810|gb|EDM25238.1| ComE [Lentisphaera araneosa HTCC2155]
          Length = 813

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 155/420 (36%), Gaps = 88/420 (20%)

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           L+V +D   V ++DP   D  +    T++    +V  + + ++G  G  + +  ++ +  
Sbjct: 407 LKVKIDNHAVYIADP---DYPLEETETVFF---DVPLSMIEVVGDAGDGLTDDGLVRDSG 460

Query: 120 IAHLEMTLRR----FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
             + +   ++    F A + I      + +V+      IQ  +R ++             
Sbjct: 461 ETNWQDYFQKSGVTFPAGAKISFVSNVNRLVVTNTAANIQLIKRIIDELGR--------- 511

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-----SSSGPSKSF 230
                              Q++++    +V  +  +++GF    TG      +    + F
Sbjct: 512 ----------------PSAQISVETKFIDVDFNTTQELGFMWRWTGPRTPNHTLTGDRIF 555

Query: 231 AADFGGKFVSEGGDFSVKGV------------------LDRFSFETVLHALERATAIRTL 272
           A    G   +E  D +++G+                        + ++ AL+++     L
Sbjct: 556 AQSNDGATAAERFDNNIRGINEIVTSQEGPVQLAADLVFGNQELQMMVRALDQSDTSEVL 615

Query: 273 AEPTLTAISGQSASFTSGGQHLYKT-------VSSSTGATSVTT---HDYGVVLHFTPTV 322
           + P     SG +       +             + +   T+ T     D GV+L  TP V
Sbjct: 616 SSPNAVTQSGNTVVLRVVEERFLPEEWEEAQLDADAIIPTTPTFGEARDIGVILEVTPEV 675

Query: 323 LSPGR-IGLRIQTEV-----------SEPVIGVNAGDMPSY--------RVRKADTTVEL 362
            +    I + +  +            S+     ++   P++         +R+ +T  ++
Sbjct: 676 SADNNTISMDLNPQQVELLGYDTELNSDLTNFTDSITYPNFFNYAMPIVSIRQVETRAQI 735

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
             G T+++ GL+K+ +  + + IP +S IP LG  F+N     E+T + I  T  L+ PV
Sbjct: 736 WDGETLLIGGLVKETVYSVDDSIPYVSDIPYLGRFFQNKGERSEKTNLLIFVTGRLISPV 795


>gi|237738589|ref|ZP_04569070.1| general secretion pathway protein D [Fusobacterium sp. 2_1_31]
 gi|229424072|gb|EEO39119.1| general secretion pathway protein D [Fusobacterium sp. 2_1_31]
          Length = 514

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 118/310 (38%), Gaps = 37/310 (11%)

Query: 132 ADSNIRV--EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
            D  ++V  E   + +     V ++    + V  +E  + ++  +         ++  ++
Sbjct: 218 PDEVLKVLHETFGENI----KVSSLNKVNKLVVSAERDILENAIS---------IIEDID 264

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
                QV +   I ++  ++ +++GF        +S    S  A   GK    G   S+ 
Sbjct: 265 -KNPKQVKISSQILDISNNLFEELGFDWVYRQNVASEERNSLTAIILGKAGLNGVGSSLN 323

Query: 249 GVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            V    +      T L+ LE    +   + PTL   SG+   F    + +    ++    
Sbjct: 324 IVRQFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENK 383

Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------- 353
               T     + G+++   P +     I L I  E+S+     N  ++            
Sbjct: 384 NDRHTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDINSGTYNSEG 443

Query: 354 -----RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R   T V + +G TI++ GL K   Q ++  IP+L  IPI+   F+N+   RE +
Sbjct: 444 GSKVGRALTTKVRVKNGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENS 503

Query: 409 EIFIAATPFL 418
           +++I     +
Sbjct: 504 DMYIKLKVEI 513


>gi|320155169|ref|YP_004187548.1| type IV pilus biogenesis protein PilQ [Vibrio vulnificus MO6-24/O]
 gi|319930481|gb|ADV85345.1| type IV pilus biogenesis protein PilQ [Vibrio vulnificus MO6-24/O]
          Length = 594

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 108/282 (38%), Gaps = 46/282 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++N L+I    QV ++  I  V    L ++G +   T  +   +              
Sbjct: 313 REIINSLDIP-VKQVQIEARIVTVNEGNLDELGVRWGFTSINGSTTVGGSIENNLATIGL 371

Query: 230 -----------------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETV 259
                                           +      +     F V  +      +  
Sbjct: 372 YNAGSGSGSGDSGSGGSGSEGGSASIDDFLNVNLAATSANASSIAFQVAKLGSDLLLDLE 431

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL+R +    ++ P L   + + A    G +  Y   SSS+GAT+V+     + L  T
Sbjct: 432 LSALQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVT 490

Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +    R+ L +      P  ++    G+  +   ++  T V + +G T+VL G+ +  
Sbjct: 491 PQITPDNRLVLDLSVTQDRPGEIVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 550

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           I    + +PLL  +P+LGALFR S  N  + E+ I  TP ++
Sbjct: 551 ITNTTDKVPLLGDLPLLGALFRRSYENVGKRELLIFVTPKVI 592


>gi|189424531|ref|YP_001951708.1| type II and III secretion system protein [Geobacter lovleyi SZ]
 gi|189420790|gb|ACD95188.1| type II and III secretion system protein [Geobacter lovleyi SZ]
          Length = 792

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 119/326 (36%), Gaps = 40/326 (12%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------EDQVTLKV 200
              D+++A  L  T L         ++++  V +  ++              E +V L V
Sbjct: 281 NHLDAKKAANLIRTMLQVRRLYINEDANALVVRDTSDVTDVIEKILEAHDLPEAEVVLDV 340

Query: 201 TIAEVRRDILKQIGF---QHSITGSSSGPSKSFAADFGGKFVSEGG-------------- 243
            + E+       +G     + +   +  PS    A       S                 
Sbjct: 341 EVIEISDKNAHNVGLLLSNYDVQLGAFSPSNELLATTLKDTTSTTSTTVTTDATIKNLVK 400

Query: 244 DFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            FS+       +      +  +       L+ P +   + + A F  G +    T + +T
Sbjct: 401 AFSINSFGGYVTVPNAQYNFGKTLANGEVLSNPKIRVKNKEKAKFNVGTRVPITTTTMAT 460

Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYR 352
                  +V   D GV ++  PT+     + +++  EVS  +     G       + +  
Sbjct: 461 TGTTSQVNVQYVDVGVKVNAEPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTIG 520

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  DT + L  G T V+ GL+       K+ I LL  IP++G L  NS+ + ++TE+ +
Sbjct: 521 TRNLDTVLSLKDGETSVIGGLISHSNSDSKQKIFLLGDIPLIGPLLSNSKTDNDKTELIL 580

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVED 438
           A TP LV+ V +   +      S ED
Sbjct: 581 AITPRLVRGVTVPRGNLTSFSSSKED 606


>gi|182414666|ref|YP_001819732.1| type II and III secretion system protein [Opitutus terrae PB90-1]
 gi|177841880|gb|ACB76132.1| type II and III secretion system protein [Opitutus terrae PB90-1]
          Length = 895

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 41/224 (18%)

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           +  G   ++ GV+  F    V+ AL +      L+ P +T +SG  A+ T   +  Y   
Sbjct: 653 LGAGPLATISGVIGEFDVNAVVRALSQQQGTDLLSAPKVTVLSGNPATITVAQEMRYPQS 712

Query: 299 SSSTGAT----------------------SVTTHDYGVVLHFTPTVLSPG-RIGLRIQTE 335
              T +                         T  + GV L  TPTV      I L +  +
Sbjct: 713 FGQTQSQVGTGNASGGGSAGVAITAGTPQEFTKRNIGVELRVTPTVEEDDYSISLDLNPK 772

Query: 336 VSE---------PVIGVNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           V+E         P I ++             P + VR   T V +  G T+V+ GL +++
Sbjct: 773 VTEFDGFVEYGGPSIAISGSTTVTVPSGFYQPIFSVRDIATKVTIWDGATLVMGGLTREE 832

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           ++++ + +P+L  +P++G  FR+   + ++  + I  T  LV P
Sbjct: 833 VKKVNDKVPILGDLPLIGRAFRSKGESAQKRNLLIFVTANLVNP 876


>gi|294781789|ref|ZP_06747122.1| general secretion pathway protein D [Fusobacterium sp. 1_1_41FAA]
 gi|294481899|gb|EFG29667.1| general secretion pathway protein D [Fusobacterium sp. 1_1_41FAA]
          Length = 514

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 118/310 (38%), Gaps = 37/310 (11%)

Query: 132 ADSNIRV--EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
            D  ++V  E   + +     V ++    + V  +E  + ++  +         ++  ++
Sbjct: 218 PDEVLKVLRETFGENI----KVSSLSKVNKLVVSAERDILENAIS---------IIEDID 264

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
                QV +   I ++  ++ +++GF      + +   ++             G  S   
Sbjct: 265 -KNPKQVKISSQILDISNNLFEELGFDWVYRQNIASEERNTLTAIILGKAGLNGVGSTLN 323

Query: 250 VLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           ++ +F+       T L+ LE    +   + PTL   SG+   F    + +    ++    
Sbjct: 324 IVRQFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENK 383

Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------- 353
               T     + G+++   P +     I L I  E+S+     N  ++            
Sbjct: 384 NDRHTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDVNSGTYNSEG 443

Query: 354 -----RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R   T V + +G TI++ GL K   Q ++  IP+L  IPI+   F+N+   RE +
Sbjct: 444 GSKVGRALTTKVRVKNGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENS 503

Query: 409 EIFIAATPFL 418
           +++I     +
Sbjct: 504 DMYIKLKVEI 513


>gi|281356804|ref|ZP_06243295.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316931|gb|EFB00954.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 836

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 112/314 (35%), Gaps = 74/314 (23%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224
             V++ L    E  V +     E+ +D LK++ F + +T +                   
Sbjct: 501 DTVIHELLDQQEPMVQILCKFIEISQDDLKELAFNYQLTVNGGAEANVMENGKYPRDVKF 560

Query: 225 GPS-----------KSFAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHALERATAIRTL 272
           GP+            + + D      +    FS V    D  +    L AL +A ++  L
Sbjct: 561 GPNSNELLRYYRDETNSSGDSSTGNPTYNSTFSYVWQNADGTAIVANLFALNQADSMDVL 620

Query: 273 AEPTLTAISGQSASFTSGGQHLYK------------TVSSSTGATSVTTHDYGVVLHFTP 320
             P +T + GQ A      +  +             T  S  G+   T++  G+     P
Sbjct: 621 GAPRVTTLPGQPAHIEMVTERYFPEDWEIVDLPNNNTGGSGDGSNEGTSYWRGISADPQP 680

Query: 321 TVLSPGR---IGLRIQTEVSEPVIGVNA------------------------------GD 347
              S      I   IQ E+ +    + A                                
Sbjct: 681 NFESEPTKLGIVFDIQPEIDKERRTITAHVLLPVQTLSGWMIFDARTYDSDGNTDGEYYQ 740

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           MP +  R  +T + +  G T+VL G+ +D ++ + + IP+L  +PI+G LF++   + ++
Sbjct: 741 MPIFDKRSIETDITVYDGETVVLGGVAQDKVEIVNDKIPVLGDLPIVGRLFQSKYTDSQK 800

Query: 408 TEIFIAATPFLVKP 421
             + +  T  LVKP
Sbjct: 801 RNLLVFLTCRLVKP 814


>gi|171909907|ref|ZP_02925377.1| Type II secretory pathway component, protein D [Verrucomicrobium
           spinosum DSM 4136]
          Length = 665

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 108/300 (36%), Gaps = 44/300 (14%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-----SKSFAADFGGKFVSEGGDFSV 247
           + Q+ ++V   E  RD  K+ G   S T   SG      S +   + G + V+       
Sbjct: 270 QSQIAIEVKFFETSRDPAKEFGVDWSGTFGQSGLFRQVDSVTSDPETGQQTVNTTNIAQT 329

Query: 248 KG---------------------------VLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           +G                           VL        L A+ +    RT++ P +   
Sbjct: 330 EGGYRADLSNLLSLGNLNEAKAFLAPSTAVLSAQDVNIKLRAMLKDQETRTVSYPRMVTT 389

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           + +     S         S+ST   +       ++    G V++  P  +   +I L + 
Sbjct: 390 NNREVVIRSVVNQPVLGGSASTSLGTGSTTTSSISYLPIGTVINILPKRMMDDKINLNLA 449

Query: 334 TEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
             VS  +    +     P    R     VEL +G T+ + GL +   Q+ ++GIP+L KI
Sbjct: 450 ITVSSIIGTEVIQGNPYPVASSRVYSAPVELNNGYTVAVGGLDEAREQEGEQGIPVLGKI 509

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           PILG  F+     +    + I  TP L+    +RD   P+   SV          +  +I
Sbjct: 510 PILGYAFKTKGKAKNHKNLMIFITPSLI---DVRDGGLPEKPQSVLPRKPEELMPKTPRI 566


>gi|21241188|ref|NP_640770.1| HrcC protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21106496|gb|AAM35306.1| HrcC protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 607

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 87/241 (36%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGK-----FVSEGG 243
            +  TI E+R   ++ +G             TG+ SG    F     G          GG
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGNGSGGQLGFNGALSGAATDGATTPAGG 429

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +           T + ALE     + ++ P +  +    A      Q   +   S   
Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGYA 487

Query: 304 ATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           +  +     GV L   P+V      G++ L ++ E    +       +P     +  T  
Sbjct: 488 SADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQA 546

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V 
Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606

Query: 421 P 421
           P
Sbjct: 607 P 607


>gi|83647801|ref|YP_436236.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC
           2396]
 gi|83635844|gb|ABC31811.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC
           2396]
          Length = 615

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 28/330 (8%)

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTV-VLHGM-VRTIQDSQRAVELSETFLSQ 170
           ++++    + L   L      S      +   V VL G    +   S         ++  
Sbjct: 198 EVVVPGMASVLRGALAAGQGKSGET--SIGGPVGVLEGKRTSSPVTSDMPGTGERAWVEA 255

Query: 171 SGRNQYANSSS--------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
            GR                K ++  L+   E QV + V+I  V    LK++G        
Sbjct: 256 DGRTNSIIVYDRLERMPMYKALVRNLDQPSE-QVEVNVSIISVSATNLKELGVSWQARDQ 314

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---------FETVLHALERATAIRTLA 273
             G       D      ++     + G    FS         F   ++AL      + ++
Sbjct: 315 KLGEFGYGGIDKQNPAPNKNQLAILGGADATFSTVLDSGLDYFIAKVNALVEDGDAQVVS 374

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGL 330
            P++       A          +          +     G VL  TP +        I L
Sbjct: 375 RPSVVTSEHLEAVLDDSTTFHVRV--QGNEQVDLFPVTVGSVLRVTPHIQRGEEQKGINL 432

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            +  E      G     +P  +    +T   +  G ++++ G  +D   +   G+PLL  
Sbjct: 433 EVTIE-DGQQTGEEVDRIPVIKTSSINTQTVVGLGQSLLIGGFFQDYESESVGGVPLLKD 491

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+LGALFR +  NR++       TP ++ 
Sbjct: 492 IPLLGALFRTTNHNRKKMVKLFLMTPKIID 521


>gi|163786002|ref|ZP_02180450.1| type II general secretion pathway (GSP) D protein [Flavobacteriales
           bacterium ALC-1]
 gi|159877862|gb|EDP71918.1| type II general secretion pathway (GSP) D protein [Flavobacteriales
           bacterium ALC-1]
          Length = 718

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 106/288 (36%), Gaps = 22/288 (7%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            + +  D +  VEL+  +++ +G         K+ +  ++ A    + ++V I E +   
Sbjct: 434 EITSGLDHKIDVELNSIYVTGTGAKIELF---KEFIRSIDKAIPV-ILIEVMIVEAQTSN 489

Query: 210 LKQIGFQHSITGSSSGPSKSF----AADFGGKFVSEG-GDFSVKGVLDRF----SFETVL 260
             + G    +    +    S         G + ++     FS   V +      +F   +
Sbjct: 490 TLEAGVTWGLGTEPATTEGSLFPTTDVTLGAQTINRIISGFSSTSVFNFGKVVPNFFATV 549

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--GATSVTTH-------D 311
            A+E    ++  + P L  ++G  ASF++G    Y  V  +T       TT        D
Sbjct: 550 KAMETNGDLKIKSTPKLATLNGHRASFSNGQTSYYAVVQRNTIGNDNPQTTEIRNYFPVD 609

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
             + L   P V     + L I    S     +     P    R   + V +      VL 
Sbjct: 610 AKLGLEIKPYVTGNKEVLLNINVVQSNFGQRIAEDAPPDINSRDFSSVVRMKDQDIAVLG 669

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GL ++       G+P L++IP++  LF        ++++ +   P ++
Sbjct: 670 GLEENYSNNSGSGVPFLARIPLIKWLFSKRVREGRKSKLTVFIKPTVI 717


>gi|30524891|gb|AAP34336.1|AF499777_4 HrcC [Xanthomonas axonopodis pv. glycines]
          Length = 607

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 87/241 (36%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGK-----FVSEGG 243
            +  TI E+R   ++ +G             TG+ SG    F     G          GG
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGNGSGSQLGFNGALSGAATDGATTPAGG 429

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +           T + ALE     + ++ P +  +    A      Q   +   S   
Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGYA 487

Query: 304 ATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           +  +     GV L   P+V      G++ L ++ E    +       +P     +  T  
Sbjct: 488 SADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQA 546

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V 
Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606

Query: 421 P 421
           P
Sbjct: 607 P 607


>gi|282899176|ref|ZP_06307153.1| pilQ(type II and III secretion system protein) [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195931|gb|EFA70851.1| pilQ(type II and III secretion system protein) [Cylindrospermopsis
           raciborskii CS-505]
          Length = 522

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 17/264 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKS 229
           G  Q  + ++ K+ N L+I    QV + + I +V    ++     F   I  +     + 
Sbjct: 258 GNPQLVDIATSKLTN-LDIR-RRQVKVNLKIIDVNLWGIQNYNSSFSFGIGDNFFSNDQG 315

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            A    G      G  SV   L      F   L A       + L +P+L    GQ+A+ 
Sbjct: 316 IATFNFGNQRPFTGSGSVPASLGGLPNRFLAFLQAQVTNGNAKILTDPSLIVQEGQNANV 375

Query: 288 TSGGQHL-------YKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP 339
               Q +         T  +S     +   + G+ ++     +   G + L +   V  P
Sbjct: 376 KLTQQVIGQERITRIDTPGNSREERIIEKEEVGLTVNVRVERIDDNGFVSLSVAPVVKSP 435

Query: 340 VIGVN--AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           V   +  AG +     R  ++  + L  G T++L+G+++D  + +   +PLL  IP+LGA
Sbjct: 436 VNSESPGAGKVTLIAERSLNSGLIRLRDGQTLLLSGIIQDQDRTVVTKVPLLGDIPLLGA 495

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           LFR++  +RE  E+ +  TP +++
Sbjct: 496 LFRSTNKDRERREVIVLLTPRIIE 519


>gi|322435311|ref|YP_004217523.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321163038|gb|ADW68743.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 819

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 111/326 (34%), Gaps = 18/326 (5%)

Query: 117 ERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
             D   +   LR  +     + +    + +V+ G    +  +Q+ +   +    +   + 
Sbjct: 274 ANDGNEILTGLRLLLDPTVKLYLVPSQNAIVMRGTTDELLLAQKLINDFDRARPEVVVDV 333

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
                S+  +  L I     + L   ++              S T +SS  + S ++   
Sbjct: 334 AVLEVSRDKVRTLGITLPQSIGLTPQLSNANSTSTTSSTTTTSTTTTSSTTTSSTSSLTL 393

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                         +         L+AL      R L  P + A  GQ A+   G +   
Sbjct: 394 NNLAHLNATNFAVSITGG-----TLNALLTDGDTRILQNPRIRATDGQRATLKIGSKIPI 448

Query: 296 KTVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-- 343
            T S + G           T  T  D GV +  TPTV     + ++++ EVS     V  
Sbjct: 449 ATGSYNAGVSTGVASIGVQTQFTYIDVGVNIDITPTVHYDREVSMKMKIEVSSQSNTVVI 508

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +    P    R ++  +++  G   +LAG+L     +   G P L ++P     F     
Sbjct: 509 SGVSEPIISQRISEQVIQVQDGEPSILAGILTHQDSKTVSGTPFLGELPFFKYFFSTQSK 568

Query: 404 NREETEIFIAATPFLVKPVAMRDLSR 429
             ++ E+     P +V+   +  L+ 
Sbjct: 569 ETQQDELVFLIIPHVVRESVLTRLNT 594


>gi|90412668|ref|ZP_01220670.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum 3TCK]
 gi|90326476|gb|EAS42888.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum 3TCK]
          Length = 406

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 110/280 (39%), Gaps = 12/280 (4%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIA 203
           VL    +   + Q A  +       S     + S   ++ NL+        QV +   + 
Sbjct: 133 VLTAYSKNTGEMQTAYSVITLPNINSMIVTGSPSQLTQIDNLIKRVDVRRKQVLIDAVVM 192

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           + R    + IG    +    +G           K   +GG+     + D+     ++ A+
Sbjct: 193 DTRLGDSESIGVSLDVLLEGAGFRLISNPVASIKESFKGGNI----IYDKGDVSALVTAI 248

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----VTTHDYGVVLHFT 319
            +    + L++P L  +  +  +   G    +   + ++   S    +   + G+ L   
Sbjct: 249 TQNQNTKLLSKPYLLVMDREKGAINVGQNVPFLVSTETSNNGSLVQKIERQNVGLGLSVV 308

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P ++    + L I    S       A D+ +   R+ +T V++  G +I+L GL+ D+ +
Sbjct: 309 PHIV-NDSVVLAINQTSSSVSDSDIASDIIT-NNREINTVVQVLDGQSIILGGLVSDESR 366

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + + G+PLL  IP +G LFR +      +++ +     ++
Sbjct: 367 KSESGVPLLKDIPWIGGLFRTTSDKSVSSQMSVLIKVTVI 406


>gi|225874512|ref|YP_002755971.1| type II/III secretion system protein [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792554|gb|ACO32644.1| type II/III secretion system protein [Acidobacterium capsulatum
           ATCC 51196]
          Length = 786

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 139/382 (36%), Gaps = 54/382 (14%)

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
             V +P T+++   +     + L     +     ++  + D   ++  LR     ++I  
Sbjct: 218 YRVITPNTIFV-AADTRAKRMQLEDQAVQTFYLHNVTQQSDFTDIQTALRNVFQTAHIFG 276

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
               + +V+      +  +                        ++++  L+    + V +
Sbjct: 277 VASQNAIVMRATPDELLLA------------------------RQLIGQLDQPKPE-VLV 311

Query: 199 KVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAADFGGKFVSEGGDFSVK 248
            V + EV R+  ++IG Q   T +          SS  S S ++       S     +  
Sbjct: 312 DVAVLEVSRNFERKIGLQLPQTATVNLQASTSSSSSSSSSSSSSSSSSSSTSSSLTLNNL 371

Query: 249 GVLDRFSFETVL-----HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             L+  +F   +       L   T  + + EP + A  GQ A    G +    T S  TG
Sbjct: 372 AHLNSNNFAVTIGQAEADLLLTNTDTQIIQEPRIRASDGQDAQLKIGEKLPVATGSYQTG 431

Query: 304 A----------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSY 351
           A          T     D GV +   PTVLS   + ++++ +VS      N G +  P  
Sbjct: 432 AATAIVSSLVNTQFQYLDVGVNIDVKPTVLSDRDVSMKVKIDVSSTNGTENLGGVDEPII 491

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R AD T+ L +G   ++ G+ +        G P LS++P+L  +F        + ++ 
Sbjct: 492 TQRVADETIRLKNGEANLIGGIRQVQTSNSLSGTPGLSELPLLKYIFGVHDHTVSKDDLV 551

Query: 412 IAATPFLVK-PVAMRDLSRPDD 432
           I   P +V  P    +  +P D
Sbjct: 552 ILLIPHVVSAPTTNPNDLQPID 573


>gi|94969024|ref|YP_591072.1| type II and III secretion system protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551074|gb|ABF40998.1| type II and III secretion system protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 764

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/318 (18%), Positives = 119/318 (37%), Gaps = 23/318 (7%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           +  L  T+R  +  + ++       +V+ G    +   Q+ ++  +    +         
Sbjct: 257 LQDLVNTIRTIVEVNRVQQLPTQGAIVVRGTPDQVALVQKLIDDIDKARPEVVVEVAVMQ 316

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
            SK  M  L I      ++ V++A      L      ++   +++G         G    
Sbjct: 317 VSKTKMRNLGIQPPS--SISVSMA----SNLSSNNNNNNNNNNNNGNGNGNGTGTGTDNS 370

Query: 240 SEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           + G   +    L+  +F         + L      + +  P++ A+ GQ A+   G +  
Sbjct: 371 NGGISLNDLAHLNATNFILTVPTATANFLFSDADTKLIQNPSIRAVDGQKATLKIGDRIP 430

Query: 295 YKTVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
             T S   G           T     D GV +  TP + +   + +++  +VS      N
Sbjct: 431 VATGSFQPGIGGVGINPLVNTQFNYIDVGVNIDITPRIHANNEVSMKLVLDVSSVTGYQN 490

Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            G +  P+   RK +  + L  G   +L G+L+ +  +   G+P LS+IP+L   F    
Sbjct: 491 IGGIQQPTIGQRKIEHEIRLKDGEINLLGGILQSEDDKTIAGLPYLSQIPLLRYFFSTDN 550

Query: 403 FNREETEIFIAATPFLVK 420
             + ++E+     P +V+
Sbjct: 551 KTKSDSEVVFVVIPHIVR 568


>gi|149917610|ref|ZP_01906107.1| type II and III secretion system protein [Plesiocystis pacifica
           SIR-1]
 gi|149821673|gb|EDM81071.1| type II and III secretion system protein [Plesiocystis pacifica
           SIR-1]
          Length = 777

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 80/208 (38%), Gaps = 11/208 (5%)

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           S +  S       G + +  G    ++   D  +F  V+ AL+    +  +AEP +    
Sbjct: 467 SPAALSGLAGGLIGPQLIGTGAQLGLER--DIPAFGVVIQALQSNDDVNIVAEPHIYTAD 524

Query: 282 GQSASFTSGGQHLYKT---------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            + A    G +               +S T   S+   D  + +  TP V     + L I
Sbjct: 525 NKEAQIEVGRKVPTPGALQFGGAGGGTSLTPLQSINREDVTLDIKVTPHVKDETSLTLDI 584

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + E  + V       + + + R     V       +VL GL+++   +  + +P L  IP
Sbjct: 585 ELEDRDVVDQDPVLGVTTTKRRIKLENVLARDDLPVVLGGLMRERELENTQQVPGLGSIP 644

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
           ILG LF+     +E+  + I   P +V+
Sbjct: 645 ILGWLFKRRVKQKEKINLLIVLIPHVVE 672


>gi|223936189|ref|ZP_03628102.1| type II and III secretion system protein [bacterium Ellin514]
 gi|223895051|gb|EEF61499.1| type II and III secretion system protein [bacterium Ellin514]
          Length = 906

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/340 (20%), Positives = 120/340 (35%), Gaps = 97/340 (28%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----------------------SI 219
           +K +  LN+A   Q+ +K    E+ ++  K +GF                        + 
Sbjct: 546 EKAIQTLNVA-PPQINIKAKFIEITQNDSKALGFDWFLGNFLLGGGKLGAQGGTAPSFAG 604

Query: 220 TGSSSGPSKSFAAD--------------------------FGGKFVSEGGDF-----SVK 248
             S++ PS  F                              GG   + G        +V 
Sbjct: 605 APSTANPSGVFPGSPATIDPVTGLGSLPTTIPPSTSDQLITGGLRNTAGTATVPTIATVT 664

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---------- 298
           G+L    F   + ALE+   +  L  P +T  SG+ A   +       T           
Sbjct: 665 GLLTDPQFRVAIRALEQRDGVDLLTAPDVTTESGRQAQIQAIDIQTIVTGQQFGQGANGA 724

Query: 299 -------------SSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIG-- 342
                        +++T   +  T  +G VL   P V +    + + I   V+E V    
Sbjct: 725 NAASGVGSTVIQNTATTSQYTTQTLPFGPVLDVIPYVSADEFSVQMTIIPTVTEFVQYDP 784

Query: 343 -----------------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
                            V A  +P +R+R+  T+V +    T+VL GL+ D + ++K+ +
Sbjct: 785 PGPFVPQASAIAGGTSVVGALPLPHFRMRQVTTSVTVWDSQTVVLGGLITDSVTKIKDQV 844

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           PLL  +P +G LFR+    + +  + I  TP ++ P   R
Sbjct: 845 PLLGDMPFVGRLFRSESSQKTKKNLVIFVTPTIINPDGSR 884


>gi|22299887|ref|NP_683134.1| putative general secretion pathway protein D [Thermosynechococcus
           elongatus BP-1]
 gi|22296072|dbj|BAC09896.1| tlr2344 [Thermosynechococcus elongatus BP-1]
          Length = 719

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 96/264 (36%), Gaps = 34/264 (12%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQ---------HSITGSSSGPS--KSFAADFGGKFVSE 241
           + QV + V   +V     +                   SS G S  +    + G      
Sbjct: 424 KRQVMVNVKFIDVNLSRTRTANADLITNFGSGLWGAIFSSEGLSVIRGTTPNVGSLTPQP 483

Query: 242 GGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSA------SFTSGGQHL 294
              F    V     +F   +           L  PTL    G +A         SG Q  
Sbjct: 484 LPPFPGTPVGSLLSNFFAQIQLAIDTGNATILTNPTLVIQEGSAAQVNLTQEIFSGIQST 543

Query: 295 YKTVSSSTGATSVTT------HDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGVN--- 344
             + ++ +GA   +          GV+ + T   +   G I L++  EVS P    +   
Sbjct: 544 VSSQATGSGAAITSQQITPIIRPAGVIFNVTVDQIDDNGFITLQLSPEVSAPTDTYDVVF 603

Query: 345 -AGDMPSYRV----RKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              D PS       R+ ++  + L  G T++LAG+++D  +     +P+L  IP+LG LF
Sbjct: 604 PGVDNPSIGTLLAQRRMESGRIRLRDGQTLMLAGIIQDQDRSTVTKVPILGDIPLLGRLF 663

Query: 399 RNSRFNREETEIFIAATPFLVKPV 422
           R    +R+  E+ +  TP ++   
Sbjct: 664 RRESNSRQRNELVVMVTPKIIDDT 687


>gi|293416358|ref|ZP_06658997.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B185]
 gi|291431714|gb|EFF04697.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B185]
          Length = 566

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 109/259 (42%), Gaps = 25/259 (9%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++ LL++A +  V L + I ++ ++ L+Q+G          G S SF+       +    
Sbjct: 296 LVRLLDVA-KRHVELSLWIIDLNKNDLEQLGVAW-------GGSTSFS-----NKLDIAL 342

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           + ++   LD   F   ++ALE+    R +++P L       A F +      K +     
Sbjct: 343 NQTLVSTLDGVHFLASVYALEKKNQARIVSKPVLMTQENVPAIFDNNRTFYTKLIGERNS 402

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE----VSEPVIGVNAGDMPSYRVRKADTT 359
           + +  T  YG ++   P   + G I + +  E      + V G     +P        T 
Sbjct: 403 SLAHVT--YGTMISVLPRFSADGEIEMSLNIEDGNEEKQSVSGNEDSVLPEVGRTHISTV 460

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P G ++++ G  +D   +  + IPLL  IP++G LFR    N+           FL+
Sbjct: 461 ARVPQGKSLLIGGYTRDSRTKDVQKIPLLGDIPLIGGLFRYENQNQNN-----VVRVFLI 515

Query: 420 KPVAMRDLSRPD-DHYSVE 437
           +P  + D   PD D ++ E
Sbjct: 516 QPKEILDPLMPDADVFAAE 534


>gi|313142359|ref|ZP_07804552.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131390|gb|EFR49007.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 505

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 100/275 (36%), Gaps = 34/275 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADF 234
           +  +  L+   + QV + V I  +  +     G          ++   + G   SF  + 
Sbjct: 217 ESYIQSLHQRLQKQVLIDVHILSITHNNTNTTGINWDELYNLQNLIIPAFGEGASFGGNG 276

Query: 235 GGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                S       KGV +            S   ++  LE    + +++ P +  ++ Q 
Sbjct: 277 EVGNTSGINIVGQKGVSNLHYGINIFSQGLSLNRIIEFLESYGKVESISNPKVLTLNNQP 336

Query: 285 ASFTSGGQHLYK--TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQT 334
           A  + G    Y+  T+  +T A +  T+          GV+L  TP V     I L+I  
Sbjct: 337 AMISVGDILRYQKNTIYQNTNAQTTLTNTDNEYPSLFAGVLLDITPLVF-GEEIMLKINP 395

Query: 335 EVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            +++       +        P+    +  + V + +   ++L GL+  +    +  IP+L
Sbjct: 396 SITKTKENRTEIPNTAFETPPNLTTNQLSSIVSVKNNQKVILGGLISKNFATKENKIPIL 455

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
             IP++  LF  S+      EI     P +++   
Sbjct: 456 GSIPLIKPLFSYSQEVENTEEIVFIIEPKIIQAQD 490


>gi|260888944|ref|ZP_05900207.1| hypothetical protein GCWU000323_00103 [Leptotrichia hofstadii
           F0254]
 gi|260861391|gb|EEX75891.1| putative general secretion pathway protein D [Leptotrichia
           hofstadii F0254]
          Length = 399

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 125/305 (40%), Gaps = 40/305 (13%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
           R++  +   L  F     I ++   + V+  G    +++ +R ++  +            
Sbjct: 119 RNVKDITEALNGFFGFEVIGID---NKVIFSGDESKVEEMKRIIKSLDK----------- 164

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGG 236
                          ++Q+ +K TI +   ++ +++G   SI  ++S  +K +  A F  
Sbjct: 165 --------------EKEQIIIKGTIIDTSSNLFERLGIDWSINSNNSNATKDNLVAKFLN 210

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295
             VS    FS  G      F    + L+    IR  A PTL  +  +        + L  
Sbjct: 211 GEVSIASIFSKGGRFLGIDF----NLLKENGDIRIEAMPTLMIMENEEGELKVTEEVLVG 266

Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVNAGDMP- 349
             KT    T        + G+V    P    +    +I L+I TE+S   +  +      
Sbjct: 267 EKKTTKKDTEYVEPIFSEAGIVFRINPEIRKINGIKKILLKIDTEISNFKLTSSYNASSG 326

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           + +  +  TT+ L +GG+  + GL +D  ++    +P+LSKIPI+G LF+  R NRE  +
Sbjct: 327 AKQKNQTKTTITLNNGGSTFIGGLKQDVSKETIRRVPVLSKIPIIGPLFKYRRTNREMRD 386

Query: 410 IFIAA 414
           I+I  
Sbjct: 387 IYIEI 391


>gi|224418841|ref|ZP_03656847.1| putative type II secretion system D [Helicobacter canadensis MIT
           98-5491]
 gi|253828170|ref|ZP_04871055.1| secretion system protein [Helicobacter canadensis MIT 98-5491]
 gi|253511576|gb|EES90235.1| secretion system protein [Helicobacter canadensis MIT 98-5491]
          Length = 496

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 100/275 (36%), Gaps = 34/275 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADF 234
           +  +  L+   + QV + V I  +  +     G          ++   + G   SF  + 
Sbjct: 208 ESYIQSLHQRLQKQVLIDVHILSITHNNTNTTGINWDELYNLQNLIIPAFGEGASFGGNG 267

Query: 235 GGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                S       KGV +            S   ++  LE    + +++ P +  ++ Q 
Sbjct: 268 EVGNTSGINIVGQKGVSNLHYGINIFSQGLSLNRIIEFLESYGKVESISNPKVLTLNNQP 327

Query: 285 ASFTSGGQHLYK--TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQT 334
           A  + G    Y+  T+  +T A +  T+          GV+L  TP V     I L+I  
Sbjct: 328 AMISVGDILRYQKNTIYQNTNAQTTLTNTDNEYPSLFAGVLLDITPLVF-GEEIMLKINP 386

Query: 335 EVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            +++       +        P+    +  + V + +   ++L GL+  +    +  IP+L
Sbjct: 387 SITKTKENRTEIPNTAFETPPNLTTNQLSSIVSVKNNQKVILGGLISKNFATKENKIPIL 446

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
             IP++  LF  S+      EI     P +++   
Sbjct: 447 GSIPLIKPLFSYSQEVENTEEIVFIIEPKIIQAQD 481


>gi|119897096|ref|YP_932309.1| general secretion pathway protein D [Azoarcus sp. BH72]
 gi|119669509|emb|CAL93422.1| general secretion pathway protein D [Azoarcus sp. BH72]
          Length = 580

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 115/291 (39%), Gaps = 28/291 (9%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           +D+   V   E+ +         +S   + ++ +  A   QV ++ TI EV      Q G
Sbjct: 259 KDADAVVSNRESGVLVVRATARQHSRIAEFIDAVQRAARRQVMIEATIVEVALGDEYQQG 318

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                 G+ +    +  +             S          +  L  LE   + + L+ 
Sbjct: 319 IDWRRLGNPNWRVAARGSGDANALTPTLSYLS-------DRLDVRLDLLETFGSAKILSS 371

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTG------------ATSVTTHDYGVVLHFTPTV 322
           P L+ ++ Q+A      + +Y  V +ST              T+  +   G+V+  T  V
Sbjct: 372 PRLSVLNNQTAMLKVVEEVVYFLVDASTTQYDDADREKTTATTTPQSVSVGMVMALTAQV 431

Query: 323 LSPGRIGLRIQTEVS---------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
            + G I L ++  +S          P +G     +P  R R+ ++ + L SG T VL GL
Sbjct: 432 SAGGEIILNVRPTISSISGFKDDPNPSLGSIPNRVPQIRTREIESVLRLRSGETAVLGGL 491

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           ++D +      IPLL  +P+LG +F +       +E+ I   P +V+  A+
Sbjct: 492 IEDKVDYDTGRIPLLGSLPLLGEVFSHRDNAVRRSELVIFLRPVVVEDPAL 542


>gi|167948310|ref|ZP_02535384.1| General secretion pathway protein D [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 251

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 11/216 (5%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGGKF 238
           S +  +  L++    QV ++ TIAEV        G +  + G+  G  K     +     
Sbjct: 37  SVEATIRKLDVP-PMQVLIEATIAEVSLTNNLSYGVRWFLQGNMGGSDKWQGGLNLPLPS 95

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G  FS+  +      +   + L   ++++ L+ P +  +  QSASF  G Q    T 
Sbjct: 96  GVSGSGFSLGILNSMDELKLFFNLLNAQSSVKFLSAPQIMVVDNQSASFRVGDQIPIITR 155

Query: 299 SSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMP 349
           SS +         T V   D G +L  TP V   G + L I  EVS+P     V  G   
Sbjct: 156 SSQSTTNPDAPIVTEVQFRDTGTLLTVTPRVNVGGMVTLEISQEVSKPGSAPAVGGGGNV 215

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
               R  D+TV + SG TI+L GL+ +     K+GI
Sbjct: 216 PIAQRTVDSTVVVNSGQTIILGGLISETSNDTKDGI 251


>gi|225166011|ref|ZP_03727761.1| Type II secretory pathway component PulD-like protein [Opitutaceae
           bacterium TAV2]
 gi|224799746|gb|EEG18225.1| Type II secretory pathway component PulD-like protein [Opitutaceae
           bacterium TAV2]
          Length = 693

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 111/311 (35%), Gaps = 53/311 (17%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               QV ++     +     +Q+G        ++    +         V  G + +  G+
Sbjct: 378 RPVQQVLIEARFITISEAAFQQLGLNWETNRPTTSARSATDYTSIATTVGFGLEKTFTGI 437

Query: 251 L--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------------- 295
              +  S    L A+E++   +TL+ P LT I+ + A+   G    Y             
Sbjct: 438 FGSNSDSLTATLTAIEQSGESQTLSAPRLTVINNRPATIRDGKTQYYYEEYQVSQTILEN 497

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAGDM------ 348
           ++ SS   +   T    GV L    ++   GR I L ++  VS+ V  V    +      
Sbjct: 498 RSTSSLVPSGKPTKLSAGVSLDVLASIGGDGRSIMLALKPSVSQDVELVTFATVSDLDSS 557

Query: 349 -----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                      P  R ++  T V + SG T+V+ G++++      E +P+L  IP LGAL
Sbjct: 558 GRVVSTFDIKLPQSRDQEISTRVIVQSGETVVMGGVIENVQSTFTESVPVLGAIPYLGAL 617

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           FR      +   + I  T  L+                         F R N   G +E 
Sbjct: 618 FRTKTEVSKPRYLLIFVTATLLSETGE--------------------FVRYNNAPGTEET 657

Query: 458 SEVEGQNYKGA 468
              + ++ +G 
Sbjct: 658 PRTQRRSRRGT 668


>gi|325917024|ref|ZP_08179263.1| HrcC protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325536775|gb|EGD08532.1| HrcC protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 606

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGK-----FVSEGG 243
            +  TI E+R   ++ +G             TG   G    +     G          GG
Sbjct: 369 QIDATIIEIRDGAMQDLGVDWRFHSRRVDVQTGDGRGGQLGYDGTLSGAAAAGATSPLGG 428

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +           T + ALE+    + ++ P +  +    A      Q   +   S   
Sbjct: 429 TLTAVLGDAGRYLMTRVSALEQTNKAKIVSTPQVATLDNVEAVMDHKQQAFVRV--SGYA 486

Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           +  +     GV L   P+V+     G++ L ++ E    +       +P     +  T  
Sbjct: 487 SADLYNLSAGVSLRVLPSVVPGSSNGQMRLDVRIE-DGQLGANTVDGIPVITSSEITTQA 545

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  Q     +P LSKIP++G LF++ + +    +     TP +V 
Sbjct: 546 FVNEGQSLLIAGYASDTDQTDLNKVPGLSKIPLIGNLFKHRQQSGSRLQRLFLLTPHIVS 605

Query: 421 P 421
           P
Sbjct: 606 P 606


>gi|238023720|ref|YP_002907952.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia glumae BGR1]
 gi|237878385|gb|ACR30717.1| Type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia glumae BGR1]
          Length = 605

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 102/270 (37%), Gaps = 33/270 (12%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-------------SSG 225
              + ++  L++     V ++  I E+  + L+QIG      GS             +S 
Sbjct: 338 GQYEDLIRQLDVR-PQIVEIQAHIIEIDDNTLQQIGVDWRAHGSHLDFQTGNGQAAQNSF 396

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL-----------HALERATAIRTLAE 274
            +      FG    +  G   V       +   V+           +AL+  +  +  A 
Sbjct: 397 STGQLNPTFGSVQQAGPGSTIVNATPAGAAISAVVGGAGRYLLASVNALQSNSKAKIDAT 456

Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330
           P +  +    A+  +  +   +    +S    SV+T   GV L   P ++      RI L
Sbjct: 457 PLVATLDNVEATMDNTTKFYVRVQGYTSADLYSVST---GVSLRVLPLIVHDRDGTRIKL 513

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            +  E +  +      ++P     + +T   +  G ++++AG   D       G+P LSK
Sbjct: 514 SVHIE-NGSLTQQQVDNIPVITTSQINTQAFVGEGESLLIAGFTTDKTANGVTGVPFLSK 572

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+LGALFRN+       E     TP ++ 
Sbjct: 573 IPLLGALFRNNSDQHNHNETVFLLTPRIID 602


>gi|170738269|ref|YP_001779529.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia cenocepacia MC0-3]
 gi|169820457|gb|ACA95039.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia cenocepacia MC0-3]
          Length = 588

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 99/264 (37%), Gaps = 30/264 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADFGGK 237
             ++  L++     + ++  I EV    ++Q+G   +   S     +G        +GG 
Sbjct: 329 PALIQRLDVK-PRLIEIEAHIFEVDTSSIRQLGVNWTAHNSHIDLQTGNGLGAQNTYGGT 387

Query: 238 FVSEGGDFSVKGVLDRFS-----------------FETVLHALERATAIRTLAEPTLTAI 280
                G+ ++ G +   +                     + ALE     +  A P +T +
Sbjct: 388 LTQNFGNTTLAGNVTAAAMPVGGVLSAVIGNAGRYLMANVSALEEQNLAKIDASPKVTTL 447

Query: 281 SGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV 336
               A   +  Q   +    +S    SV+T   GV L   P V+  G   +I L +  + 
Sbjct: 448 DNIEADMANQTQFFVRVSGYTSADLYSVST---GVSLRVLPMVVDEGGRTQIKLDVAIQ- 503

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
              +      ++P       +T+  +  G  +++AG   D       G+P+LSKIP++G 
Sbjct: 504 DGQLTSRTVDNIPVISSTNINTSAFVNEGEALLIAGYKNDGRIDTTTGVPVLSKIPVIGN 563

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           LF+ +       E     TP +++
Sbjct: 564 LFKYTDRENTRMERLFLLTPRIIE 587


>gi|91762809|ref|ZP_01264774.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718611|gb|EAS85261.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1002]
          Length = 518

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 92/268 (34%), Gaps = 38/268 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------GSSSGPSKSFAA 232
            KV+  ++   + QV ++  I E      + +G +             G+  G S   A+
Sbjct: 259 DKVIREIDKRTK-QVLIEAFIVEATSTFEQSLGKRLGAAYTRKSLRMGGTQGGSSVGAAS 317

Query: 233 DFGGKFVSEGGDFSVKGVLDRFS---------------------FETVLHALERATAIRT 271
             G       G F+     D                         +  L  LE     +T
Sbjct: 318 GTGAALSDSTGAFTSGAGTDNLVNFGSAAATSGIGILKKTGSAVLKLELDFLEAQGLSKT 377

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           ++ P L  +  Q AS   G            G       D  + L  TP ++  G + L 
Sbjct: 378 VSNPKLFTLDNQQASINQGETIYI-----DGGEGEDKPVDASLKLIVTPNIIGDGNVMLS 432

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           IQ     P     A         + +T + +  G  +V+ G+ K+++   ++G+P  SK+
Sbjct: 433 IQVNNDTPNRANAAS--VGVNKMEINTKLLVADGDIVVIGGIKKNNVANNRQGVPGTSKV 490

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           PILG +      +    E+ +   P ++
Sbjct: 491 PILGKVLSGKSNSDTMNELLVFIAPRIL 518


>gi|257487975|ref|ZP_05642016.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 243

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 95/235 (40%), Gaps = 13/235 (5%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           ++  G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FGK  GQ ++I
Sbjct: 19  NIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLI 78

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +  +G++   L + +    A +   L+     S  R+      V+  G V+ + ++   
Sbjct: 79  ALDSEGRETAALSLAVSSSTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDL 138

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI- 219
             L    LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   +  
Sbjct: 139 NAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNAL 188

Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
              G+ S    +  A             S        + + +L AL+    +  L
Sbjct: 189 FNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVL 243


>gi|116071978|ref|ZP_01469246.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. BL107]
 gi|116065601|gb|EAU71359.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. BL107]
          Length = 744

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 8/194 (4%)

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL- 294
           G+ +   G    K      SF + + A+  +++ +TLA+PTL    GQ A   +G   + 
Sbjct: 527 GRPIYVAGKDPNKFSYPENSFYSYVEAVIESSSAKTLAQPTLLVQEGQEAEVQTGTSVIT 586

Query: 295 -YKTVSSSTGATSVTT--HDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
              T  +S G+T       + G+ L      +   G + L I  E+S P     +  +  
Sbjct: 587 SVSTTDTSNGSTQFEYSRENAGLSLKVKVSKIDDNGFVSLNIDPEISVPEPAGESNGVAI 646

Query: 351 YRV--RKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +  R   + ++ L    T++L G+++D  +++    P+L  +P++G LFR++   R +
Sbjct: 647 FNIVGRSLSSGSIRLRDRQTLILTGVIQDQDKEIARKWPILGDLPVIGQLFRSTDSQRSK 706

Query: 408 TEIFIAATPFLVKP 421
            E+ I  TP +V  
Sbjct: 707 NELVILVTPMIVDD 720


>gi|9885640|gb|AAG01463.1|AF282857_12 hrcC gene product [Pantoea stewartii subsp. stewartii]
          Length = 677

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/272 (20%), Positives = 91/272 (33%), Gaps = 18/272 (6%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++N ++I  ++ V +   I ++ R  L ++      T        S  +  G  FVS  
Sbjct: 297 QLINKIDIP-QNLVEIDAVIIDIDRTALNRLEANWQATLGGVTGGTSLMSGSGTLFVS-- 353

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                    D   F   + ALE       +A P++  +  Q A             ++  
Sbjct: 354 ---------DFKRFFADIKALEGEGTASIVANPSVLTLENQPAVIDFSQTAYI--TATGE 402

Query: 303 GATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
               +     G  L  TP  +       I L I  E    V   N G     +     T 
Sbjct: 403 RVADIQPVTAGTSLQVTPRAVGHQDHASIQLVIDIEDGH-VETNNDGQATGVKRGTVSTQ 461

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +     +VL G   ++  +    IPLL  IP LG LF ++R    + E     TP L+
Sbjct: 462 ALISENRALVLGGFHVEESGERDRRIPLLGDIPWLGRLFTSTRHEISQRERLFILTPRLI 521

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
                       D+     DA A    R + +
Sbjct: 522 GDQTDPTRYVSADNRQQLSDAMARVERRHSNV 553


>gi|163757297|ref|ZP_02164392.1| type II general secretion pathway (GSP) D protein [Kordia algicida
           OT-1]
 gi|161322754|gb|EDP94108.1| type II general secretion pathway (GSP) D protein [Kordia algicida
           OT-1]
          Length = 721

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 104/286 (36%), Gaps = 20/286 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVRRDILK 211
             D    +++   +   S      +SS K+  N +    +    V ++V + +V +  + 
Sbjct: 435 PADLIADLQIEADYELNSFYVSGPSSSVKRFRNFVEKIDKPVPVVLIEVMLIDVSKLSVV 494

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---------TVLHA 262
           + G    I    +  S S          +   +  + G     SF            + A
Sbjct: 495 ETGISWGIGDEPTQTSGSLFPTTNLTLGANTVNRVIGGFDGFGSFNLGKVVPEFFANISA 554

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTGATSVTTHDYG 313
           +E+   I+  + P ++ ++G  A+ ++G    Y              ++  T+    D  
Sbjct: 555 MEQDGDIKIRSTPKISTLNGHRATLSNGTTSYYAVTQRNIYGTNNPQTSEITNYYPIDAE 614

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + +   P V   G++ L I    S     ++    P    R+  + + +      VL G+
Sbjct: 615 LGISIKPIVSGDGQVTLDIFVIQSTFGSRISEDAPPDISSREFRSIIRMRDQDIAVLGGI 674

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +   +    G+P L++IP++   F   +    ++++ +   P ++
Sbjct: 675 EEKQKRDEGNGVPFLARIPVIKWFFSKRKRQDSKSKLTVLIKPTVI 720


>gi|34498052|ref|NP_902267.1| type III secretion system EscC protein [Chromobacterium violaceum
           ATCC 12472]
 gi|34103907|gb|AAQ60267.1| type III secretion system EscC protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 495

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 11/223 (4%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + + V I +V    L  +G   S + S  G   SF +        +G D     + +   
Sbjct: 272 IEVSVMIIDVNSQDLSALGIDWSASASIGGNGISFNS-----AGQQGSDNFSTVISNTGG 326

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L+AL++    + L+ P++  +    A         + T   +     + +   G +
Sbjct: 327 FMVKLNALQQKAKAQILSRPSVVTLDNTQAVLD--RNITFYTKLLAEKVAKLESISTGSL 384

Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371
           L  TP ++  G    + L +  +       V+    +P     +  T   L +G +++L 
Sbjct: 385 LRVTPRLVDEGGQRNVMLTLVIQDGRQAGTVSQHEPLPQTLNAEVSTQTLLKAGQSLLLG 444

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           G ++D+  + +  IPLL  IP++G LFR+++ N   T      
Sbjct: 445 GFVQDEHSEGESKIPLLGDIPLIGKLFRSTQKNSRSTVRLFLI 487


>gi|116620187|ref|YP_822343.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223349|gb|ABJ82058.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 872

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 12/176 (6%)

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----------ATS 306
              L  +      + L  P L A+    A+   G +    T S   G           T 
Sbjct: 435 AATLQLVLSDGNTKVLQSPQLRAVDNVKATLKIGDRQPTATGSFQPGIGGVGINPLVNTQ 494

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPS 364
            T  D GV +  TP V   G + + I  ++S     VN G +  P    RK    + +  
Sbjct: 495 FTYIDVGVNVELTPRVHDNGDVSMHIDLDISSVTGHVNLGGIDQPIIGQRKVSHDIRMHE 554

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G   +LAGL K    + K GIP L+ +PI+G LF     +RE  E+ IA  P +V+
Sbjct: 555 GSVQLLAGLTKWQDTKTKTGIPGLANVPIIGRLFSGESVDRERQELMIALIPHIVR 610


>gi|71082769|ref|YP_265488.1| type II secretion PilQ [Candidatus Pelagibacter ubique HTCC1062]
 gi|71061882|gb|AAZ20885.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1062]
          Length = 518

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 92/268 (34%), Gaps = 38/268 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------GSSSGPSKSFAA 232
            KV+  ++   + QV ++  I E      + +G +             G+  G S   A+
Sbjct: 259 DKVIREIDKRTK-QVLIEAFIVEATSTFEQSLGKRLGAAYTRKSLRMGGTQGGSSVGAAS 317

Query: 233 DFGGKFVSEGGDFSVKGVLDRFS---------------------FETVLHALERATAIRT 271
             G       G F+     D                         +  L  LE     +T
Sbjct: 318 GSGAALSDSTGAFTSGAGTDNLVNFGSAAATSGIGILKKTGSAVLKLELDFLEAQGLSKT 377

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           ++ P L  +  Q AS   G            G       D  + L  TP ++  G + L 
Sbjct: 378 VSNPKLFTLDNQQASINQGETIYI-----DGGEGEDKPVDASLKLIVTPNIIGDGNVMLS 432

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           IQ     P     A         + +T + +  G  +V+ G+ K+++   ++G+P  SK+
Sbjct: 433 IQVNNDTPNRANAAS--VGVNKMEINTKLLVADGDIVVIGGIKKNNVANNRQGVPGTSKV 490

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           PILG +      +    E+ +   P ++
Sbjct: 491 PILGKVLSGKSNSDTMNELLVFIAPRIL 518


>gi|226326440|ref|ZP_03801958.1| hypothetical protein PROPEN_00288 [Proteus penneri ATCC 35198]
 gi|225205223|gb|EEG87577.1| hypothetical protein PROPEN_00288 [Proteus penneri ATCC 35198]
          Length = 601

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 84/246 (34%), Gaps = 22/246 (8%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           +++ L+   + QV L + I ++ ++    +G       SS   S  F             
Sbjct: 112 LIDQLDKP-KRQVELSLWIIDISKNKADSLGIDWQAGYSSGNHSFFF------------- 157

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           + S        +F   + AL      + ++ P L       A F +      +       
Sbjct: 158 NTSSLSAASGLNFLGKIRALTEDGDAKMVSRPILLTQENTPAIFDNNTTFYTQIKGERVA 217

Query: 304 ATSVTTHDYGVVLHFTPTV-LSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKAD 357
               TT  +G ++   P +  S   I + I  E       +         +P        
Sbjct: 218 TLESTT--FGTMMSVLPRIGNSNKEIEMIINLEDGAEKKDDKAKDETVESLPVINRTNIS 275

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T   +  GG++++ G  ++D    +  IP+LS IP++G LF     N ++        P 
Sbjct: 276 TVARVSEGGSLLIGGYTREDNINAETKIPVLSSIPLIGGLFSYKSDNNKKMVRIFMLQPR 335

Query: 418 LVKPVA 423
           L+    
Sbjct: 336 LLDNTE 341


>gi|86130937|ref|ZP_01049536.1| general secretion pathway protein D [Dokdonia donghaensis MED134]
 gi|85818348|gb|EAQ39508.1| general secretion pathway protein D [Dokdonia donghaensis MED134]
          Length = 728

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 102/287 (35%), Gaps = 21/287 (7%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVRRDILK 211
            QD ++ + +       S     A++  K+    +    +    V ++V I EV ++   
Sbjct: 441 PQDVKQDLNIIVDKELNSFIVSGASADIKRFKEFIQDIDKQVPIVIIEVMILEVSKNSTL 500

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------RFSFETVLHA 262
             G +  I    S    +   +      +   +  +  +             +F   + A
Sbjct: 501 DAGIEWGIGQEPSVTQGNIFPNTNLSLGASTINRILGRIDGSSFFNIGQVGPNFFATIRA 560

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------TGATSVTTHDYG 313
            E        + P +T ++G  A F++G    Y+   +          + +      D  
Sbjct: 561 SETNGNFNIKSSPRITTLNGHRAYFSNGRTSYYEITQNQFVGVQNPVVSESVDYVPIDAE 620

Query: 314 VVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           + L   P V   G + + I+  + S     V     P    R+  + ++  +   +VL G
Sbjct: 621 LSLEVLPFVSEDGEVTMDIKVIQSSFSGERVTENGPPEISSREFTSIIKSRTNDIVVLGG 680

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L +D       G+P L++IPI+  LF        ++++ +   P ++
Sbjct: 681 LEEDSKNNSGSGVPFLARIPIIKWLFSKRVRTASKSKLTVLIKPTVI 727


>gi|220932103|ref|YP_002509011.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
 gi|219993413|gb|ACL70016.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
          Length = 385

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 100/244 (40%), Gaps = 24/244 (9%)

Query: 182 KKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           +K++NL+    +   Q+ + V ++EV    LK++G           PS +   D G   V
Sbjct: 158 EKIINLIKRIDKPRKQIKITVVVSEVSTKELKKLGTGFLEYREKDNPSLNLKYD-GSSLV 216

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             G  F         +  T L  L+     +  A+P++  + G+ A    G +       
Sbjct: 217 LNGNIFE--------NLLTRLEILQEEEKAKIHADPSIVVMDGEPAELFIGEKQTLFITE 268

Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK- 355
                  +        G+ L  TP ++S   + L     +S  V       +P   VR+ 
Sbjct: 269 DE----EIEYFKDIKVGISLKVTPRLISKDEMILDFSPSISHFVNS----KLPEIAVREN 320

Query: 356 -ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             DTTV + SG T V+AG+   D    K+ +P L+KIP+L  LF     +  + E+ I  
Sbjct: 321 TLDTTVRVASGQTAVIAGMTLQDDYNYKKSVPGLNKIPLLRWLFTKKVNDTGDRELLIFV 380

Query: 415 TPFL 418
           TP +
Sbjct: 381 TPTI 384


>gi|294625827|ref|ZP_06704443.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599855|gb|EFF43976.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 607

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            +  TI E+R   ++ +G             TG   G    F     G   ++G    V 
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVG 428

Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G L     +        + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 429 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486

Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            +  +     GV L   P+V      G++ L ++ E    +       +P     +  T 
Sbjct: 487 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQ 545

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V
Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 605

Query: 420 KP 421
            P
Sbjct: 606 SP 607


>gi|294055468|ref|YP_003549126.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614801|gb|ADE54956.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 906

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 128/325 (39%), Gaps = 53/325 (16%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN-----LLNIAGEDQVTLKVTIAE 204
            V+ ++   + +E+++  L + G +      ++ +++     +L+  G   V  +  ++ 
Sbjct: 542 EVKQVEIEAKFLEVAQNDLEELGFDWTVGEGAQTIVDEFGAPVLDQFGNPTVAYQRNVST 601

Query: 205 VRRDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET-- 258
             R +        + +  +     G   S +        +     +   +     +    
Sbjct: 602 QGRTLADAFSADTASSAINITDVFGNESSVSTQPPANPSTIDLAANAASLFTATGWSMFG 661

Query: 259 -----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---------TVSSSTGA 304
                 + A+ R +    ++ P +T +SG+ A+ T   +  Y            S++ G 
Sbjct: 662 ADVNLAIRAIARQSGSDLMSAPKVTVLSGKRANITVAQELRYPESYGDIESTVSSNNNGG 721

Query: 305 TSVTT----------HDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNA 345
            +++            + GV L  TP V +   I L ++  V+E         P + + +
Sbjct: 722 AAISITAGTPEDFVVRNVGVELAVTPNVENDDTISLILEPRVTEFEGFVEYGGPSVALAS 781

Query: 346 GDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           G           P +  R+  T V +  G TIV+ GL +D+++ +++ +P+L  IP LG 
Sbjct: 782 GTTVTVPAGFYQPVFSTREISTEVTIFDGATIVMGGLTRDEVKYIEDKVPVLGDIPALGR 841

Query: 397 LFRNSRFNREETEIFIAATPFLVKP 421
           LFR+    R++  + I  T  +V P
Sbjct: 842 LFRSEGETRQKRNLLIFVTANMVSP 866


>gi|294665979|ref|ZP_06731242.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604227|gb|EFF47615.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 607

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            +  TI E+R   ++ +G             TG   G    F     G   ++G    V 
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVG 428

Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G L     +        + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 429 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486

Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            +  +     GV L   P+V      G++ L ++ E    +       +P     +  T 
Sbjct: 487 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQ 545

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V
Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 605

Query: 420 KP 421
            P
Sbjct: 606 SP 607


>gi|86605695|ref|YP_474458.1| type IV pilus secretin PilQ [Synechococcus sp. JA-3-3Ab]
 gi|86554237|gb|ABC99195.1| putative type IV pilus secretin PilQ [Synechococcus sp. JA-3-3Ab]
          Length = 723

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 92/257 (35%), Gaps = 28/257 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADF----GGKFVSEGGD 244
             QV +     E+  D    +G        +    SG +  F         G  V   G 
Sbjct: 467 SRQVLISARFIEINLDNNSSLGVALGSASGNFALGSGDNTVFGGTPLDQPAGSSVPNVGS 526

Query: 245 FSVKGVLDRF----------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           F   G               S    + A   +   + LA+P +   +   A+   G + +
Sbjct: 527 FPAAGTGGSLVFNTLNRLQQSLAARIDAAIASGTAKILADPKVVVANNTGAAIVVGQEVI 586

Query: 295 YKTVSSSTGATSVTTH-----DYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
                 +  AT ++T      + GV L      +   G I L +  ++S     +   D 
Sbjct: 587 TNRRLQTDPATGISTVVFEKGNAGVNLLIQNVRIDDNGYITLNLLPQISSIGSQITLSDG 646

Query: 349 PSY---RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
                   R   T    L    T+ L GL++++ +   + +PLLS+IP+LG+LFR     
Sbjct: 647 TVISLLNQRSVGTLQTRLKDRETLFLGGLIQEEDRVSVDKVPLLSEIPLLGSLFRRQNTT 706

Query: 405 REETEIFIAATPFLVKP 421
              +E+ +  TP +++ 
Sbjct: 707 NTRSEVVVLITPVILED 723


>gi|159024044|gb|ABW87272.1| HrcC [Xanthomonas fuscans subsp. fuscans]
          Length = 607

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            +  TI E+R   ++ +G             TG   G    F     G   ++G    V 
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVG 428

Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G L     +        + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 429 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486

Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            +  +     GV L   P+V      G++ L ++ E    +       +P     +  T 
Sbjct: 487 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQ 545

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V
Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 605

Query: 420 KP 421
            P
Sbjct: 606 SP 607


>gi|886477|emb|CAA90274.1| SepC [Escherichia coli]
          Length = 512

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 110/262 (41%), Gaps = 29/262 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ L+I  + Q+ + V+I +V  + L+Q+G   S T ++   + +F +       + 
Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TA 315

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             + S   + +  +F   ++AL++ +  + L++P++  ++   A         + T  S 
Sbjct: 316 QVNISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346
               S+ +   G +L  TP +L      L                     ++      + 
Sbjct: 374 EKVASLRSITSGTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 433

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P  +  +  T   L +G    LA L K      K+GIPLLS IP++G+LF ++   + 
Sbjct: 434 TLPEVQNSEMTTEATLSAGKVYYLADLSKIKKVPSKDGIPLLSDIPVIGSLFSSTVKQKH 493

Query: 407 ETEIFIAATPFLVKPVAMRDLS 428
                     FL+K   ++  S
Sbjct: 494 S-----VVRLFLIKATPIKSAS 510


>gi|7416860|dbj|BAA94087.1| hypersensitive response secretion protein [Xanthomonas oryzae pv.
           oryzae]
          Length = 605

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            +  TI E+R   ++ +G             TG   G    F     G   ++G    V 
Sbjct: 368 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPVG 426

Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G L     +        + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 427 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 484

Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            +  +     GV L   P+V      G++ L ++ E    +       +P     +  T 
Sbjct: 485 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEIKTQ 543

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V
Sbjct: 544 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 603

Query: 420 KP 421
            P
Sbjct: 604 SP 605


>gi|282896843|ref|ZP_06304849.1| pilQ(type II and III secretion system protein) [Raphidiopsis
           brookii D9]
 gi|281198252|gb|EFA73142.1| pilQ(type II and III secretion system protein) [Raphidiopsis
           brookii D9]
          Length = 522

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 115/264 (43%), Gaps = 17/264 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKS 229
           G  Q  + ++ K+ N L+I    QV + + I +V    ++     F   I  +     + 
Sbjct: 258 GNPQLVDIATSKLTN-LDIR-RRQVKVNLKIIDVNLWGIENYNSSFSFGIGDNFLSNDQG 315

Query: 230 FAA-DFGGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASF 287
            A  +FG +    G       ++   + F   L A       + L +P+L    GQ+A+ 
Sbjct: 316 IATFNFGNQRPFTGSGSVPTSLVGLPNRFLAFLQAQVTNGNAKILTDPSLIVQEGQNANV 375

Query: 288 TSGGQHL-------YKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP 339
               Q +         T  +S     +   + G+ ++     +   G I L +   V  P
Sbjct: 376 KLTQQVIGQEKITRIDTPGNSREERIIEKEEVGLTVNVRVERIDDNGFISLSVAPVVKSP 435

Query: 340 VIG--VNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           V      AG +     R  ++  + L  G T++L+G+++D  + +   +PLLS IP+LGA
Sbjct: 436 VNSESTGAGKVTLIAERSLNSGLIRLRDGQTLLLSGIIQDQDRSVVTKVPLLSDIPLLGA 495

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           LFR+++ +RE  E+ +  TP +++
Sbjct: 496 LFRSTKKDRERREVIVLLTPRIIE 519


>gi|58579717|ref|YP_198733.1| hypothetical protein XOO0094 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84621739|ref|YP_449111.1| HrcC protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|7350909|gb|AAC95122.2| HrpA [Xanthomonas oryzae pv. oryzae]
 gi|9711580|dbj|BAB07849.1| HrpA [Xanthomonas oryzae pv. oryzae]
 gi|24251284|gb|AAN46403.1| HrcC [Xanthomonas oryzae pv. oryzae]
 gi|50428343|dbj|BAD29980.1| HrcC [Xanthomonas oryzae pv. oryzae]
 gi|58424311|gb|AAW73348.1| HrcC protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84365679|dbj|BAE66837.1| HrcC protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|118076671|gb|ABK60047.1| HrcC [Xanthomonas oryzae pv. oryzae]
          Length = 605

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            +  TI E+R   ++ +G             TG   G    F     G   ++G    V 
Sbjct: 368 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPVG 426

Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G L     +        + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 427 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 484

Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            +  +     GV L   P+V      G++ L ++ E    +       +P     +  T 
Sbjct: 485 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEIKTQ 543

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V
Sbjct: 544 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 603

Query: 420 KP 421
            P
Sbjct: 604 SP 605


>gi|46447532|ref|YP_008897.1| putative protein of the general secretion pathway [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46401173|emb|CAF24622.1| putative protein of the general secretion pathway [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 829

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 98/269 (36%), Gaps = 30/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K+++  L++  +  V ++  + E         G      G     + +            
Sbjct: 487 KELLRKLDVP-KKMVQIETLLFEKILTRENTFGLNLLKIGEHIAKNTNLTGATFNNIFPV 545

Query: 242 GGDFSVK--GVLDRF-----------SFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
            G+F+    GV D             +F+     L     ++  + P++  ++   A+  
Sbjct: 546 KGEFTPANAGVFDFLLSRKQTSSGIPAFDLAYRFLLSQDDVQINSNPSILTMNQTPATIA 605

Query: 289 SGGQHLYKT----VSSSTGAT---SVTTHDYGVVLHFTPTVLSP--------GRIGLRIQ 333
                   T    V ++ G T   + T   YG+ +   PT+               + ++
Sbjct: 606 VNEDISINTGIFEVETAKGTTLKDAFTRAQYGITISVKPTIHLNQHDTEDEWDFDYVTLE 665

Query: 334 TEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           T+++   I        P    R     V++P G TI+L GL +      K+ IP L ++P
Sbjct: 666 TDITFDTIHAGGDRSRPDVTRRHITNQVQVPDGDTIILGGLRRKTTNDNKDSIPFLGELP 725

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKP 421
            LG LF  +      +E+FI  TP +VK 
Sbjct: 726 GLGKLFSTNSLKDSSSEMFIFITPHIVKD 754


>gi|291086622|ref|ZP_06356285.2| type III secretion outer membrane pore, YscC/HrcC family
           [Citrobacter youngae ATCC 29220]
 gi|291067473|gb|EFE05582.1| type III secretion outer membrane pore, YscC/HrcC family
           [Citrobacter youngae ATCC 29220]
          Length = 505

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 153/405 (37%), Gaps = 39/405 (9%)

Query: 36  VINISDVEIGKGKKISIGLNKVIIL-QVPVDVQDV-------LVSDPTKADVVVHSPRTM 87
           V N + +  G  +   +G+++   +  VP  V+ +        V+    ADV        
Sbjct: 124 VRNSNLLSSGTCQLKQVGVSQSFEIYGVPECVRHITDIANQLSVAVRNMADVDQRRENVQ 183

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
               K     +V     D   ++   + + R++ + +            ++     TV  
Sbjct: 184 VFPLKYASATDVNYQYRDQTVVIPGVVSVLREMNNSQAVNSGATPT---QLNAGQQTVDN 240

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
           +G   +    Q AV + +  ++            +++++ L+   +D + + V+I +V  
Sbjct: 241 NGPTFSADPRQNAVVVRDRDINMP--------MYQRLISQLDHR-QDAIEITVSIIDVNA 291

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           + L  +G   +      G +     +        GG ++   + +   F   + ALE+ +
Sbjct: 292 EDLGALGIDWAANADIGGMNLQLNTNLA-----SGGGYATSVINNGSDFMVKVSALEQKS 346

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             + L++P++  ++   A          K V       +  T   G ++  TP V+    
Sbjct: 347 QAKILSQPSVVTLNNVQAVLDKNTTFYTKLVGDKIAQLASITS--GTLMQVTPRVVKDDE 404

Query: 328 ------IGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
                 + L IQ    +    V A D MP  +  + DT   L SG +++L G ++D    
Sbjct: 405 GTAEVLLLLSIQDGSQQQSSAVVAADAMPQVQNSEIDTQATLKSGQSLLLGGFIQDQDIV 464

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            +  IP+L  I  +G  F++    + +T        FL+K V ++
Sbjct: 465 TERKIPILGDIYWIGNFFKSKETTKIQT-----VRLFLIKAVPLK 504


>gi|120555550|ref|YP_959901.1| type II and III secretion system protein [Marinobacter aquaeolei
           VT8]
 gi|120325399|gb|ABM19714.1| type II and III secretion system protein [Marinobacter aquaeolei
           VT8]
          Length = 733

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 14/259 (5%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V ++V +AEV  +  + +G +     S    S +     G      G  +++        
Sbjct: 471 VLMEVVLAEVTLNDNQGMGVEWLARNSVGDLSGTLETLGGLGIGGRGFSYTLNSAGQT-- 528

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--------- 306
              VL+A   +      + P +   SG++A+   G +    T +  +   +         
Sbjct: 529 -RAVLNAFYDSNQAVIRSSPKIMVKSGETATIEVGNEIPVLTSTRQSDTQTDGDTDVLQQ 587

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSG 365
                 GV L   P V + G + +RI+  +SE          +P+   R  +T++ L  G
Sbjct: 588 FQYRKTGVDLTVEPIVQASGLVDIRIRQSLSETQDTSGGDSFLPTILNRAVETSLTLRDG 647

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAM 424
           G++VL GL+     Q ++G+P L K+P+LG LFR    +   TE+ +   P++V+     
Sbjct: 648 GSVVLGGLISKTNSQGEQGVPWLGKLPLLGPLFRTDSDSTSTTELMVMVVPYVVRNDEEA 707

Query: 425 RDLSRPDDHYSVEDDAKAF 443
           R++S           A+ +
Sbjct: 708 RNVSELLRERIQNSSAETW 726


>gi|332526236|ref|ZP_08402367.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332110072|gb|EGJ10700.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 318

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 93/251 (37%), Gaps = 17/251 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK 237
           +++++ L++     + ++  I ++  D L+++G    ++   S    G   +      G 
Sbjct: 50  RQLISALDV-EPQALEIEARIVDIDTDRLRELGINWRLSSGRSSLLFGNGTNSDTLLSGS 108

Query: 238 ------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                      G F    +         ++AL+   A + ++ P +  +S   A F +  
Sbjct: 109 QRPEDITPQGKGGFLSAVLGGADELALRINALQDQGAAKVVSSPQVLTLSDVEAVFDTSR 168

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDM 348
               +          + +   G  L  TP V       RI L +  E    +       +
Sbjct: 169 TFYVRVAGRED--VDLFSVSAGTTLRVTPHVFRDEHGVRIKLLVAIE-DGALSQQQVDQI 225

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P       +T   +  G ++++ GL ++        +P L  IP+LG LF++S  +   T
Sbjct: 226 PVVERASINTQALIFEGESLLVGGLTREASSNGVTKVPFLGDIPVLGNLFKSSVDSLRRT 285

Query: 409 EIFIAATPFLV 419
           E     +P LV
Sbjct: 286 ERLFLISPRLV 296


>gi|218892331|ref|YP_002441198.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa LESB58]
 gi|218772557|emb|CAW28340.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa LESB58]
          Length = 600

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 114/312 (36%), Gaps = 21/312 (6%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +   L R ++D+   V  V D     G +R    S  AV  +E  L+      + +   
Sbjct: 204 GIASILSRVLSDA--NVVAVGDE---PGKLRPGPQSSHAVVQAEPSLNAVVVRDHKDRLP 258

Query: 182 --KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
             ++++  L+      + + ++I ++  + L Q+G   S  G   G +KS      G+  
Sbjct: 259 MYRRLIEALDRPSAR-IEVGLSIIDINAENLAQLGVDWSA-GIRLGNNKSIQIRTTGQDS 316

Query: 240 SEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            EGG      V               +  L+     +  + PTL       A       +
Sbjct: 317 EEGGGAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETY 376

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MP 349
             +            T  YG +L  TP V++ G    I L +  E           D +P
Sbjct: 377 YVRVTGERVAELKAIT--YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIP 434

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +      DT   +  G ++++ G+ +D++ Q +  +P L  IP LGALFR +      + 
Sbjct: 435 TINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSV 494

Query: 410 IFIAATPFLVKP 421
                 P LV  
Sbjct: 495 RLFLIEPRLVDD 506


>gi|6016255|sp|Q01723|HRPH_PSESY RecName: Full=Hypersensitivity response secretion protein hrpH;
           Flags: Precursor
 gi|2934881|gb|AAC05014.1| envelope protein [Pseudomonas syringae]
 gi|148746178|gb|AAB05085.2| HrcC [Pseudomonas syringae pv. syringae]
          Length = 701

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 105/291 (36%), Gaps = 23/291 (7%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L+++    + +   I ++ R+ L ++  + +    S           GG 
Sbjct: 305 KAMYEKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVN---------GGA 354

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LHALE   +   +  P++  +  Q A            
Sbjct: 355 NMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY--L 412

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S    ++     G  L  TP  L      ++ L +  E  +  I       PS R  
Sbjct: 413 TATSERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKG 472

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       +PLL  IP +G  LF++      + E    
Sbjct: 473 NVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSQRERLFI 532

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            TP L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 533 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 576


>gi|66044451|ref|YP_234292.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255158|gb|AAY36254.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. syringae B728a]
          Length = 700

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 105/291 (36%), Gaps = 23/291 (7%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L+++    + +   I ++ R+ L ++  + +    S           GG 
Sbjct: 304 KAMYEKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVN---------GGA 353

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LHALE   +   +  P++  +  Q A            
Sbjct: 354 NMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY--L 411

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S    ++     G  L  TP  L      ++ L +  E  +  I       PS R  
Sbjct: 412 TATSERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKG 471

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       +PLL  IP +G  LF++      + E    
Sbjct: 472 NVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSQRERLFI 531

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            TP L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 532 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 575


>gi|313110403|ref|ZP_07796289.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa 39016]
 gi|310882791|gb|EFQ41385.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa 39016]
          Length = 604

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 114/312 (36%), Gaps = 21/312 (6%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +   L R ++D+   V  V D     G +R    S  AV  +E  L+      + +   
Sbjct: 208 GIASILSRVLSDA--NVVAVGDE---PGKLRPGPQSSHAVVQAEPSLNAVVVRDHKDRLP 262

Query: 182 --KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
             ++++  L+      + + ++I ++  + L Q+G   S  G   G +KS      G+  
Sbjct: 263 MYRRLIEALDRPSAR-IEVGLSIIDINAENLAQLGVDWSA-GIRLGNNKSIQIRTTGQDS 320

Query: 240 SEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            EGG      V               +  L+     +  + PTL       A       +
Sbjct: 321 EEGGGAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETY 380

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MP 349
             +            T  YG +L  TP V++ G    I L +  E           D +P
Sbjct: 381 YVRVTGERVAELKAIT--YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIP 438

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +      DT   +  G ++++ G+ +D++ Q +  +P L  IP LGALFR +      + 
Sbjct: 439 TINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSV 498

Query: 410 IFIAATPFLVKP 421
                 P L+  
Sbjct: 499 RLFLIEPRLIDD 510


>gi|149200051|ref|ZP_01877076.1| Peptidase M41, FtsH [Lentisphaera araneosa HTCC2155]
 gi|149136809|gb|EDM25237.1| Peptidase M41, FtsH [Lentisphaera araneosa HTCC2155]
          Length = 825

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 108/302 (35%), Gaps = 62/302 (20%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FG 235
           N   + ++N LN  G  QV ++  + ++  + ++++GF    TG  + P+ +   D  F 
Sbjct: 505 NQLIQDIINNLN-TGAAQVNVEAKVVDITWNAMQELGFLWRWTGPRT-PNHTLTGDRIFA 562

Query: 236 GKFVSEGGD----------------------FSVKGVLDRFSFETVLHALERATAIRTLA 273
                  G                        +   +      + ++ AL+++     L 
Sbjct: 563 QSNTPASGGERFDNNIRGINEVVTSQEGPVQLAADLIFGNQELQMMIRALDQSDTNEILM 622

Query: 274 EPTLTAISGQSASFTSGGQHLYKTV---SSSTGATSV--------TTHDYGVVLHFTPTV 322
            P +   SG++A         +         + +T +           D G VL  TP V
Sbjct: 623 APNVLTKSGETAVIRVVTSQQFVEEWEEGEFSNSTEIVPSTPTFGEEKDIGFVLSVTPEV 682

Query: 323 LSPGRIGL---------------RIQTEVSEPVIGVNAG----------DMPSYRVRKAD 357
                +                  + T     +  +N             MP + VR  +
Sbjct: 683 DPNNTVITMEVNPEFIEFLGYDTDLNTSTELQLFDINGSPFTYQAEFIYSMPIFEVRSIE 742

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V+L  G T  L GL+++++  + + IP +S IP +G LF+N     E+  + +  T  
Sbjct: 743 TRVKLWDGQTFTLGGLIRENVWTVDDSIPYISAIPFVGRLFQNKGEASEKRSLLMFITAR 802

Query: 418 LV 419
           L+
Sbjct: 803 LI 804


>gi|254240060|ref|ZP_04933382.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa 2192]
 gi|126193438|gb|EAZ57501.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa 2192]
          Length = 600

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 114/312 (36%), Gaps = 21/312 (6%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +   L R ++D+   V  V D     G +R    S  AV  +E  L+      + +   
Sbjct: 204 GIASILSRVLSDA--NVVAVGDE---PGKLRPGPQSSHAVVQAEPSLNAVVVRDHKDRLP 258

Query: 182 --KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
             ++++  L+      + + ++I ++  + L Q+G   S  G   G +KS      G+  
Sbjct: 259 MYRRLIEALDRPSAR-IEVGLSIIDINAENLAQLGVDWSA-GIRLGNNKSIQIRTTGQDS 316

Query: 240 SEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            EGG      V               +  L+     +  + PTL       A       +
Sbjct: 317 EEGGGAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETY 376

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MP 349
             +            T  YG +L  TP V++ G    I L +  E           D +P
Sbjct: 377 YVRVTGERVAELKAIT--YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIP 434

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +      DT   +  G ++++ G+ +D++ Q +  +P L  IP LGALFR +      + 
Sbjct: 435 TINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSV 494

Query: 410 IFIAATPFLVKP 421
                 P L+  
Sbjct: 495 RLFLIEPRLIDD 506


>gi|188574359|ref|YP_001911288.1| HrpA type III secretion outer membrane pore, YscC/HrcC family
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518811|gb|ACD56756.1| HrpA type III secretion outer membrane pore, YscC/HrcC family
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 591

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            +  TI E+R   ++ +G             TG   G    F     G   ++G    V 
Sbjct: 354 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPVG 412

Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G L     +        + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 413 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 470

Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            +  +     GV L   P+V      G++ L ++ E    +       +P     +  T 
Sbjct: 471 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEIKTQ 529

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V
Sbjct: 530 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 589

Query: 420 KP 421
            P
Sbjct: 590 SP 591


>gi|223938170|ref|ZP_03630067.1| peptidase M56 BlaR1 [bacterium Ellin514]
 gi|223893214|gb|EEF59678.1| peptidase M56 BlaR1 [bacterium Ellin514]
          Length = 1633

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 147/359 (40%), Gaps = 27/359 (7%)

Query: 121 AHLEMTLRRFIADSNIRVE----MVSDTVVLH-------GMVRTIQDSQRAVE-LSETFL 168
           A L   +RR +  +          ++  +VL        G+  +   + +  E +S+T  
Sbjct: 304 APLLQRIRRLLGQAERNPSHQAWPLAGIIVLLLVAALTIGLRSSRAVADQTQETISKTNK 363

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
             +GR   AN+    V +  ++ G    Q+ ++    EV      +  F           
Sbjct: 364 LVTGRMLPANARKTFVQSDKSLTGAQLPQIVVQSKFFEVDEKDFPKAIFNLPAV-----S 418

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +   A     + VS   +    G+L    ++  +  LE A+ I  L  P++   SG+ A 
Sbjct: 419 NAVCAIATPWQPVSAPKEQCFTGMLTGPQYQAAVKQLEMASCIDMLTAPSVITQSGRQAQ 478

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNA 345
             +      + +++++ + +     +G VL   PTV      + L     V+  +   + 
Sbjct: 479 IQAVDLI--EILTNASPSAAKMQLPFGPVLDVLPTVTPDKLGVQLTGIATVTMLLDAPSV 536

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P  +  +  T + L  G T+V+ GL+ + I  +K+ +P+L+ IP+ G LFR+   ++
Sbjct: 537 V-LPRIQFTQLSTEMTLKDGQTLVMGGLMPETITIVKDRVPVLADIPLAGRLFRSGSTSK 595

Query: 406 EETEIFIAATPFLVKPVAMR---DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
               + +  TP L+ P   R   D ++P +   +  +    F  R+    G  E +EV+
Sbjct: 596 SRKYLIVFVTPTLINPDGSRYHADDTKPTEATVLPPET-LLFETRLLLDAGKIEEAEVK 653



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 114/346 (32%), Gaps = 62/346 (17%)

Query: 104  HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
             DG Q   +  L+  D   L+  +R F   +NI     +   V   +     ++   V  
Sbjct: 1302 KDGTQP--VTNLVVHD-RGLQTAIRSFFEKANIDFSPTNPVNVGKSVFYNELNATLMVRT 1358

Query: 164  SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
            ++  L    +              L      Q+ +K    E+      QI    S+ G  
Sbjct: 1359 TQEELDLIQKE-------------LARITPPQINIKARFVEMDETAGSQITLGESMRGID 1405

Query: 224  SGPSKSFA------ADFGGKF--VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
            S  + S            G F  V+        GVL    ++  +  LERA  +  L  P
Sbjct: 1406 SKTNSSMTQVTTPKVSSSGSFPPVTNALALQFTGVLTPEQYKEAITRLERADGVDLLTAP 1465

Query: 276  TLTAISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
             +T  SG+ A   +       T         ++T   S     +G VL   P V +    
Sbjct: 1466 DVTTESGRRAQIQAVDIKTIITGLTTVYTNGTATNMLSTQNLPFGPVLDVIPKVSADDSS 1525

Query: 328  IGLRIQTEVSEPV--------IGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLK 375
            I + +   V+E V         G    D+    P +R+R+  ++  +  G TI+L G+ +
Sbjct: 1526 IEMNLVASVTEFVGYDDPKKLAGQKRTDVQIPLPHFRLRQLTSSASVADGHTIILGGVEQ 1585

Query: 376  DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            +   +                  R      +   + +  TP L+ P
Sbjct: 1586 NTPGK------------------RGKEKPGKRKTLLVFVTPTLINP 1613


>gi|107101148|ref|ZP_01365066.1| hypothetical protein PaerPA_01002180 [Pseudomonas aeruginosa PACS2]
 gi|254234815|ref|ZP_04928138.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa C3719]
 gi|296389899|ref|ZP_06879374.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa PAb1]
 gi|1781385|gb|AAC44774.1| PscC [Pseudomonas aeruginosa]
 gi|126166746|gb|EAZ52257.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa C3719]
          Length = 600

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 114/312 (36%), Gaps = 21/312 (6%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +   L R ++D+   V  V D     G +R    S  AV  +E  L+      + +   
Sbjct: 204 GIASILSRVLSDA--NVVAVGDE---PGKLRPGPQSSHAVVQAEPSLNAVVVRDHKDRLP 258

Query: 182 --KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
             ++++  L+      + + ++I ++  + L Q+G   S  G   G +KS      G+  
Sbjct: 259 MYRRLIEALDRPSAR-IEVGLSIIDINAENLAQLGVDWSA-GIRLGNNKSIQIRTTGQDS 316

Query: 240 SEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            EGG      V               +  L+     +  + PTL       A       +
Sbjct: 317 EEGGGAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETY 376

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MP 349
             +            T  YG +L  TP V++ G    I L +  E           D +P
Sbjct: 377 YVRVTGERVAELKAIT--YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIP 434

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +      DT   +  G ++++ G+ +D++ Q +  +P L  IP LGALFR +      + 
Sbjct: 435 TINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSV 494

Query: 410 IFIAATPFLVKP 421
                 P L+  
Sbjct: 495 RLFLIEPRLIDD 506


>gi|15596913|ref|NP_250407.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa PAO1]
 gi|9947691|gb|AAG05105.1|AE004598_4 Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa PAO1]
          Length = 600

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 114/312 (36%), Gaps = 21/312 (6%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +   L R ++D+   V  V D     G +R    S  AV  +E  L+      + +   
Sbjct: 204 GIASILSRVLSDA--NVVAVGDE---PGKLRPGPQSSHAVVQAEPSLNAVVVRDHKDRLP 258

Query: 182 --KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
             ++++  L+      + + ++I ++  + L Q+G   S  G   G +KS      G+  
Sbjct: 259 MYRRLIEALDRPSAR-IEVGLSIIDINAENLAQLGVDWSA-GIRLGNNKSIQIRTTGQDS 316

Query: 240 SEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            EGG      V               +  L+     +  + PTL       A       +
Sbjct: 317 EEGGGAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETY 376

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MP 349
             +            T  YG +L  TP V++ G    I L +  E           D +P
Sbjct: 377 YVRVTGERVAELKAIT--YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIP 434

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +      DT   +  G ++++ G+ +D++ Q +  +P L  IP LGALFR +      + 
Sbjct: 435 TINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSV 494

Query: 410 IFIAATPFLVKP 421
                 P L+  
Sbjct: 495 RLFLIEPRLIDD 506


>gi|226356752|ref|YP_002786492.1| secretin [Deinococcus deserti VCD115]
 gi|226318742|gb|ACO46738.1| putative Secretin precursor (GSP D family protein) [Deinococcus
           deserti VCD115]
          Length = 690

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 29/248 (11%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ ++V I E+     + +G               F    G   +S    F     L  
Sbjct: 451 PQINVQVRIQEITESAARSLGVNLKA------GFGGFNVSTGAGGLSAA--FDPTQSLVG 502

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSA----------------SFTSGGQHLYKT 297
           F+    L+ L+     +++ + T+T  SGQ A                S  SGG+     
Sbjct: 503 FNLGATLNTLQNQGLSKSIYDGTITMQSGQRALGSTTDAQNASSTAAASIKSGGRLEINI 562

Query: 298 VSSSTGATSVTTH-DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YR 352
            S +    ++    DYGV L F +P V   G I LR++ +V++    +NA  +P+   + 
Sbjct: 563 PSQAANVPAIQRQIDYGVNLDFFSPQVAPDGTITLRVRGQVNDLQTAINASTIPNLLQFT 622

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
             +A TT+   +G T++L+GLL         G+P LS IP++GALF       ++T++ +
Sbjct: 623 NSEAQTTLTFKNGETLLLSGLLATKESSTNSGVPFLSSIPVVGALFGQQTTRSQKTQLLV 682

Query: 413 AATPFLVK 420
             T  +++
Sbjct: 683 VITGNVLR 690


>gi|116049666|ref|YP_791529.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584887|gb|ABJ10902.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 600

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 114/312 (36%), Gaps = 21/312 (6%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +   L R ++D+   V  V D     G +R    S  AV  +E  L+      + +   
Sbjct: 204 GIASILSRVLSDA--NVVAVGDE---PGKLRPGPQSSHAVVQAEPSLNAVVVRDHKDRLP 258

Query: 182 --KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
             ++++  L+      + + ++I ++  + L Q+G   S  G   G +KS      G+  
Sbjct: 259 MYRRLIEALDRPSAR-IEVGLSIIDINAENLAQLGVDWSA-GIRLGNNKSIQIRTTGQDS 316

Query: 240 SEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            EGG      V               +  L+     +  + PTL       A       +
Sbjct: 317 EEGGGAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETY 376

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MP 349
             +            T  YG +L  TP V++ G    I L +  E           D +P
Sbjct: 377 YVRVTGERVAELKAIT--YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIP 434

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +      DT   +  G ++++ G+ +D++ Q +  +P L  IP LGALFR +      + 
Sbjct: 435 TINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSV 494

Query: 410 IFIAATPFLVKP 421
                 P L+  
Sbjct: 495 RLFLIEPRLIDD 506


>gi|330969113|gb|EGH69179.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 700

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 105/291 (36%), Gaps = 23/291 (7%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L+++    + +   I ++ R+ L ++  + +    S           GG 
Sbjct: 304 KAMYEKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVN---------GGA 353

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LHALE   +   +  P++  +  Q A            
Sbjct: 354 NMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY--L 411

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S    ++     G  L  TP  L      ++ L +  E  +  I       PS R  
Sbjct: 412 TATSERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKG 471

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       +PLL  IP +G  LF++      + E    
Sbjct: 472 NVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSQRERLFI 531

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            TP L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 532 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 575


>gi|229588267|ref|YP_002870386.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
 gi|229360133|emb|CAY46990.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
          Length = 713

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 90/274 (32%), Gaps = 20/274 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + ++  L++A +  + +   I ++ R  L++ G       S           F G     
Sbjct: 318 RDLITQLDVARKL-IEIDAIILDIERTQLREFGVNWGFQNSR----------FRGGVNMA 366

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   + +R  F   + ALE       ++ P++  +  Q A                
Sbjct: 367 PGTSSQVSIENRDRFYADIRALEAKGLATMVSNPSVLTLENQPAVIDFNRTQYISPGRDY 426

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIG-----LRIQTEVSEPVIGVNAGDMPSYRVRKA 356
                VT    G  L   P V +   +      + I+    +        + P  R  K 
Sbjct: 427 ATILPVT---VGTSLQVVPRVTTGRGVHQIHLVVDIEDGNFDETNPERDPNHPDVRRGKV 483

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAAT 415
            T   +    ++V+ G    D    ++ IPLL  IP+LG  LF ++  +    E     T
Sbjct: 484 STQAVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKTLFSSTERHNNRRERLFILT 543

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           P ++          P D  +    A      R +
Sbjct: 544 PRVIGDQDDPSRYLPQDDQAELQAALTPLARRYS 577


>gi|50508104|dbj|BAD30080.1| outer-membrane protein of Hrp(typeIII) secretion pathway
           [Pseudomonas syringae pv. tabaci]
          Length = 699

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 104/287 (36%), Gaps = 23/287 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+++    + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 307 EKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   + +   F   LHALE   +   +  P++  +  Q A             ++S
Sbjct: 357 AGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI--TATS 414

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               ++     G  L   P  L      ++ L +  E  +  I       PS R     T
Sbjct: 415 ERVANIEPITAGTSLQVIPRSLDHDGKPQVQLSVDIEDGQIDISDINDTQPSVRKGNVST 474

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
              +   G++V+ G    +       IPLL  IP +G  LF++      + E     TP 
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 535 LI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 574


>gi|76817445|ref|YP_335577.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1710b]
 gi|76581918|gb|ABA51392.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710b]
          Length = 630

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237
           ++  L+I     + ++  I E+  D+L++IG       S      G   +   D+ G   
Sbjct: 370 LIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 428

Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281
                  +  G+  V       S               + AL+  + ++  A P +  + 
Sbjct: 429 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARHLMARVSALQSTSKVKIDASPLVATLD 488

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338
              A   +  +   K   S   +  + +   GV L   P ++  G   RI + +      
Sbjct: 489 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 545

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            + G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 546 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 605

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 606 RYHSDSQNHMERVFLLSPRIIDP 628


>gi|289663772|ref|ZP_06485353.1| HrcC protein [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289668194|ref|ZP_06489269.1| HrcC protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 593

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 86/241 (35%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSE-----GG 243
            +  TI EVR   ++ +G             TG   G    F     G          GG
Sbjct: 356 QIDATIIEVRDGAMQDLGVDWRFHSQHTDVQTGDGRGGQLGFDGALSGAATQGTMTPVGG 415

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +           T + ALE     + ++ P +  +    A      Q   +   S   
Sbjct: 416 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGYA 473

Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           +  +     GV L   P+V+     G++ L ++ E    +       +P     +  T  
Sbjct: 474 SADLYNLSAGVSLRVLPSVVPGSSNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQA 532

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  +     +P LSKIP++G LF++ + +    +     TP +V 
Sbjct: 533 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLVGNLFKHRQKSGSRMQRLFLLTPHVVS 592

Query: 421 P 421
           P
Sbjct: 593 P 593


>gi|271500445|ref|YP_003333470.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya
           dadantii Ech586]
 gi|270344000|gb|ACZ76765.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya
           dadantii Ech586]
          Length = 690

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 110/333 (33%), Gaps = 24/333 (7%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSG----RNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            G   + +   +        +  +      ++      +++++ +++  ++ V +   I 
Sbjct: 273 SGEAASSRKKDQLNGKVSADVRNNALLIRDDEKRREEYQQLIDKIDVP-QNLVNIDAIIL 331

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           +V R  L ++         +     +  +     FVS           D   F   + AL
Sbjct: 332 DVDRTALSRLEANWQGKLGAVTGGANLMSGSSTLFVS-----------DFKRFFADIQAL 380

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E       +A P++  +  Q A             ++     +V     G  L  TP V+
Sbjct: 381 EGEGTASIVANPSVLTLENQPAVIDFSRTAFI--TATGERVANVQPVTAGTSLQVTPRVV 438

Query: 324 SPGR---IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
             G    I L I  E    V     G+    +     T   +     +VL G   ++   
Sbjct: 439 GRGSTSSIQLVIDIE-DGQVETNTEGNASGVKRGTVSTQALIGENRALVLGGFHVEESGD 497

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
             + +PLL  IP +G LF + +      E     TP L+            D+    +DA
Sbjct: 498 RDKRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSVDNRRQLNDA 557

Query: 441 KAFFFNRVNK--IYGPKEASEVEGQNYKGAIGF 471
                 R +K  ++G  E +  +  + +   GF
Sbjct: 558 MGRVAQRNSKTDLFGMVENAMRDLASGQTPAGF 590


>gi|171320148|ref|ZP_02909212.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
 gi|171094623|gb|EDT39673.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
          Length = 615

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 33/268 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------SITGSSSGPSK 228
             ++ LL++     + ++  I ++    LKQ+G                 +T  +S  + 
Sbjct: 353 PDLIALLDVK-PRLIEIEARIIQIDEGALKQLGVDWRAHNSHIDLQTGTGLTSQNSYANG 411

Query: 229 SFAADFGG---------KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTL 277
           S    FG             +     S+  VL          ++ALE +   RT A P +
Sbjct: 412 SLNPTFGSITLPGNDSVGLPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASPKV 471

Query: 278 TAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQ 333
           T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L ++
Sbjct: 472 TTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVEEGGRTQIKLDVR 528

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             V   +      ++P     + +T   +  G  +++AG   D     + GIP+LSK+P+
Sbjct: 529 I-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGIPVLSKLPL 587

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKP 421
           +GALFR++      +E     TP +++P
Sbjct: 588 VGALFRSTDRQDGHSERLFLVTPRVIEP 615


>gi|62287139|sp|Q9ZHF3|PILQ_NEIME RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           Flags: Precursor
 gi|4027986|gb|AAC96097.1| secretin precursor [Neisseria meningitidis H44/76]
          Length = 766

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 21/232 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K+++ L++    QV ++  I E      + +G +   TG     +++ A  +G      
Sbjct: 510 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 568

Query: 242 GGD----------------FSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           GGD                    G  D   +    L A E  +  +TLA P +   + + 
Sbjct: 569 GGDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKPKTLANPRVLTQNRKE 628

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S S G +S  T      + L  TP +   G+I + ++     P   
Sbjct: 629 AKIESGYEIPFTVTSRSGGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPRQC 688

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL+  P+
Sbjct: 689 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLATSPL 740


>gi|325927686|ref|ZP_08188914.1| HrcC protein [Xanthomonas perforans 91-118]
 gi|325541887|gb|EGD13401.1| HrcC protein [Xanthomonas perforans 91-118]
          Length = 607

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            +  TI E+R   ++ +G             TG   G    F     G   ++G    V 
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVG 428

Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G L     +        + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 429 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486

Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            +  +     GV L   P+V      G++ L ++ E    +       +P     +  T 
Sbjct: 487 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQ 545

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     IP LSKIP++G LF++ + +    +     TP +V
Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAIPGLSKIPLVGNLFKHRQKSGTRMQRLFLLTPHVV 605

Query: 420 KP 421
            P
Sbjct: 606 SP 607


>gi|218660088|ref|ZP_03516018.1| pilus assembly secretion protein [Rhizobium etli IE4771]
          Length = 157

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 83/160 (51%), Positives = 108/160 (67%), Gaps = 4/160 (2%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S G     K  + ++   T L+ALE+A  +RTLAEPTLTAISGQ+A+F SGGQ LY T +
Sbjct: 2   SGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPTLTAISGQAATFNSGGQQLYST-T 60

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            + G  +V   +YG+ L F P VLS GRI L I+T VSEPV G       +Y+ R A+T+
Sbjct: 61  DNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNA---TYQRRSAETS 117

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           VELPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR
Sbjct: 118 VELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFR 157


>gi|291280567|ref|YP_003497401.1| hypothetical protein DEFDS_P017 [Deferribacter desulfuricans SSM1]
 gi|290755269|dbj|BAI81645.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 531

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 104/270 (38%), Gaps = 31/270 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSGPSKSFAADFG 235
                 L      +V L V + EV  D  K+ G   +        G+  G   +F +   
Sbjct: 260 DNYFKKLKERLSKEVFLDVKVLEVTYDSNKEQGIDWNALALGKYNGNKLGIRTNFVSGSP 319

Query: 236 GKFVSEGGDFSVKGVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTS 289
             F ++   FS   +      +       +   ++    +   ++P    ++GQ A    
Sbjct: 320 DVFDTQPPGFSSLSLPVLTVSDADDVIKFIAGFVKGKGKLTVKSQPRQLVLNGQPAVIPV 379

Query: 290 GGQHLYK-------------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           G    Y              T    + +    T   GVVL F P V     I L +   +
Sbjct: 380 GQIIKYISNISSDSGSDSSLTGGDLSYSVETGTLQTGVVLQFLPKVTDDNNIVLNLGVTI 439

Query: 337 S----EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           +         +N     +P   VR   +TV++ SG TIV+ G+L D+  +++  +PL+  
Sbjct: 440 NRLDKMDEKSLNGIILQLPQTSVRAVSSTVKMKSGQTIVIGGILSDNTNEIENKVPLVGD 499

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
           IPILG LF+  +  + +TE+ +  T  +V+
Sbjct: 500 IPILGNLFKYKKKEKTKTEMIVIITAHVVE 529


>gi|282890886|ref|ZP_06299403.1| putative type III secretion protein SctC [Parachlamydia
           acanthamoebae str. Hall's coccus]
 gi|281499240|gb|EFB41542.1| putative type III secretion protein SctC [Parachlamydia
           acanthamoebae str. Hall's coccus]
          Length = 956

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 60/326 (18%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---------------------------------- 219
            QV +++ I ++  D   Q G                                       
Sbjct: 624 RQVFIEMLILDISLDDSLQYGVNWGTRFGGGNVAGSQAFLSDASTLPAALDTTGIVNNRG 683

Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
             TG +  P+ S  A   G  +   G     G L   S   ++ A+   T    +  P +
Sbjct: 684 ITTGQTLLPNASGLARLPGYNLGVLGQNVSLGNLTFDSIGALVKAIHDKTNTNIIMNPKI 743

Query: 278 TAISGQSASFTSGGQHLYKTVS-SSTGATSV----TTHDYGVVLHFTPTVLSPGRIGLRI 332
                 +A    G    ++T S S+ G T +       + G     TP + +   + L I
Sbjct: 744 LTEDNVTAEIFVGFNTPFQTQSISNIGGTPIANNFEFRNVGTTFKVTPFLGNNDIVTLEI 803

Query: 333 QTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           + EVS       +  +      P+ R+ +  T V +P    +VL+G+++D+  + +  +P
Sbjct: 804 REEVSSVASTTTSDVLNTALPGPTTRLSRTTTRVHVPDKYFLVLSGMMQDEDTRRRVNVP 863

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRP-DDHYSVEDDAKA-- 442
            L  +PI+GA F +   +  +  I I   P ++     ++++++   D +  ++++K   
Sbjct: 864 CLGGLPIIGAAFSDKTVSDAKRNIMIFIRPEIIDTEEEVQNVTKHQQDVFRYKNESKRSW 923

Query: 443 ---------FFFNRVNKIYGPKEASE 459
                    FF  +  + Y   EA E
Sbjct: 924 KYEVDEALDFFNIKSTEKYEACEACE 949


>gi|78045991|ref|YP_362166.1| HrcC protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|462304|sp|P80151|HRPA1_XANEU RecName: Full=Hypersensitivity response secretion protein hrpA1;
           Flags: Precursor
 gi|398109|gb|AAA27603.1| hrpA1 [Xanthomonas campestris]
 gi|984886|gb|AAB08464.1| HrpA1 [Xanthomonas euvesicatoria]
 gi|78034421|emb|CAJ22066.1| HrcC protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 607

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            +  TI E+R   ++ +G             TG   G    F     G   ++G    V 
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVG 428

Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G L     +        + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 429 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486

Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            +  +     GV L   P+V      G++ L ++ E    +       +P     +  T 
Sbjct: 487 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQ 545

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D  +     IP LSKIP++G LF++ + +    +     TP +V
Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAIPGLSKIPLVGNLFKHRQKSGTRMQRLFLLTPHVV 605

Query: 420 KP 421
            P
Sbjct: 606 SP 607


>gi|166714017|ref|ZP_02245224.1| HrcC [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|61219456|gb|AAX40633.1| HrcC [Xanthomonas oryzae pv. oryzicola]
          Length = 607

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            +  TI E+R   ++ +G             TG   G    F     G   ++G    V 
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPVG 428

Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G L     +        + ALE     + ++ P +  +    A      Q   +   S  
Sbjct: 429 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486

Query: 303 GATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTV 360
            +  +     GV L   P+V+       +R+   + +  +G N  D +P     +  T  
Sbjct: 487 ASADLYNLSAGVSLRVLPSVVPGSPNSQMRLDVRIEDGQLGSNTVDGIPVITSSEIKTQA 546

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  +     +P LSKIP+LG LF++ + N    +     TP +V 
Sbjct: 547 FVNEGQSLLIAGYAYDADETNLNAVPGLSKIPLLGNLFKHRQKNGSRMQRLFLLTPHVVS 606

Query: 421 P 421
           P
Sbjct: 607 P 607


>gi|251789515|ref|YP_003004236.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya
           zeae Ech1591]
 gi|247538136|gb|ACT06757.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya
           zeae Ech1591]
          Length = 691

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 101/295 (34%), Gaps = 20/295 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ +++  ++ V +   I +V R  L ++         +     +  +     FVS 
Sbjct: 312 QQLIDKIDVP-QNLVNIDAIILDVDRTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS- 369

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                     D   F   + ALE       +A P++  +  Q A             ++ 
Sbjct: 370 ----------DFKRFSADIQALEGEGTASIVANPSVLTLENQPAVIDFSRTAFI--TATG 417

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               +V     G  L  TP V+  G    I L I  E    V     G     +     T
Sbjct: 418 ERVANVQPVTAGTSLQVTPRVVGHGGSSSIQLVIDIE-DGQVETNTEGTASGVKRGTVST 476

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +     +VL G   ++     + +PLL  IP +G LF + +      E     TP L
Sbjct: 477 QALIGENRALVLGGFHVEESGDRDKRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHL 536

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK--IYGPKEASEVEGQNYKGAIGF 471
           +            D+    +DA      R +K  ++G  E +  +  + +   GF
Sbjct: 537 IGDQNDPTRFVSADNRRQLNDAMGRVAQRNSKTDLFGTVENALRDLASGQTPAGF 591


>gi|330975856|gb|EGH75922.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 702

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 105/291 (36%), Gaps = 23/291 (7%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L+++    + +   I ++ R+ L ++  + +    S           GG 
Sbjct: 306 KAMYEKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVN---------GGA 355

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LHALE   +   +  P++  +  Q A            
Sbjct: 356 NMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY--L 413

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S    ++     G  L  TP  L      ++ L +  E  +  I       PS R  
Sbjct: 414 TATSERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKG 473

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       +PLL  IP +G  LF++      + E    
Sbjct: 474 NVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGKLLFQSRSRELSQRERLFI 533

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            TP L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 534 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 577


>gi|51103131|gb|AAT96274.1| hrcC [Pseudomonas viridiflava]
          Length = 753

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 92/272 (33%), Gaps = 24/272 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V +   I ++ R  L  +  + S    S         +FG   ++ G         DR  
Sbjct: 382 VEIDAVILDIDRSQLSSLESRWSARAGS--------VNFGSSLLTGGSSTLFINDFDR-- 431

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + ALE       +A P++  +  Q A           T        +V     G  
Sbjct: 432 FFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERV--ANVQPVTAGTS 489

Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P  ++     R  L +  E    +      D P  +     T   +    ++V+ G
Sbjct: 490 LRVIPRTIAGEQPNRFQLIVDIE-DGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGG 548

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
              D+  + ++ +P+L  +P++GALF + R      E     TP LV      D   P  
Sbjct: 549 FHVDESGERQDKVPILGSLPVIGALFTSKRHEVSRRERLFILTPRLV-----GDQLDPSR 603

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           + + E+  +    +R   + G     + +   
Sbjct: 604 YIARENRPQ---LDRALALSGSPSTRQQKRDR 632


>gi|309586|gb|AAA25456.1| outer membrane protein [Neisseria gonorrhoeae]
          Length = 711

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 96/244 (39%), Gaps = 21/244 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K+++ L++    QV ++  I E      + +G +   TG     +++ A  +G      
Sbjct: 455 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 513

Query: 242 GGD----------------FSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           GGD                    G  D   +    L A E  +  +TLA P +   + + 
Sbjct: 514 GGDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKTKTLANPRVLTQNRKE 573

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   + S G  S  T      + L  T  +   G+I + ++     P   
Sbjct: 574 AKIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLTVTANITPDGQIIMTVKINKDSPRQC 633

Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +  + +     +  +T   + +GGT+++ G+ +++       +PLL+  P+     ++S
Sbjct: 634 ASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLATSPLSATSLKHS 693

Query: 402 RFNR 405
             NR
Sbjct: 694 GKNR 697


>gi|226227920|ref|YP_002762026.1| hypothetical protein GAU_2514 [Gemmatimonas aurantiaca T-27]
 gi|226091111|dbj|BAH39556.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 735

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 90/224 (40%), Gaps = 28/224 (12%)

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
            G + +  A+          +      L R+     L+AL+ ++     +EP++T ++ +
Sbjct: 505 GGNAIAGIANANNAIKPNALNLIYSTALGRYQLTAFLNALQTSSLADVQSEPSITILNNR 564

Query: 284 SASFTSGGQHLYKTVSSSTGA---------------------------TSVTTHDYGVVL 316
           SA    G +   + + +S G                             +V+  + G+ L
Sbjct: 565 SAEIFVGQEIPIRVIDASAGGQGGGGGGGGGGGGGAAGQPNAAAFFPRATVSKEEAGIKL 624

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             TP + +   + L I+ E S   I      +  +  ++A++ V +  G   V+ GL   
Sbjct: 625 SVTPQITNNKMVMLNIKAENSSAEIASTDVGV-IFNRQRAESQVLVADGEAAVIGGLTVT 683

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  + + GIP+L  +P +G +F  +  N  + ++ I  TP ++ 
Sbjct: 684 ETTRFRSGIPVLMNLPFVGRIFSQNTKNETKRDLLILVTPHILD 727


>gi|51103173|gb|AAT96315.1| HrcC [Pseudomonas viridiflava]
          Length = 753

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 92/272 (33%), Gaps = 24/272 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V +   I ++ R  L  +  + S    S         +FG   ++ G         DR  
Sbjct: 382 VEIDAVILDIDRSQLSSLESRWSARAGS--------VNFGSSLLTGGSSTLFINDFDR-- 431

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + ALE       +A P++  +  Q A           T        +V     G  
Sbjct: 432 FFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERV--ANVQPVTAGTS 489

Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P  ++     R  L +  E    +      D P  +     T   +    ++V+ G
Sbjct: 490 LRVIPRTIAGEQPNRFQLIVDIE-DGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGG 548

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
              D+  + ++ +P+L  +P++GALF + R      E     TP LV      D   P  
Sbjct: 549 FHVDESGERQDKVPILGSLPVIGALFTSKRHEVSRRERLFILTPRLV-----GDQLDPSR 603

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           + + E+  +    +R   + G     + +   
Sbjct: 604 YIARENRPQ---LDRALALSGSPSTRQQKRDR 632


>gi|289623690|ref|ZP_06456644.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647636|ref|ZP_06478979.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298485943|ref|ZP_07004018.1| type III secretion system outer membrane pore protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|37931591|gb|AAP72286.1| HrcC [Pseudomonas savastanoi]
 gi|298159529|gb|EFI00575.1| type III secretion system outer membrane pore protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|330871294|gb|EGH06003.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 699

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 104/287 (36%), Gaps = 23/287 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+++    + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 307 EKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   + +   F   LHALE   +   +  P++  +  Q A             ++S
Sbjct: 357 AGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI--TATS 414

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               ++     G  L   P  L      ++ L +  E  +  I       PS R     T
Sbjct: 415 ERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVST 474

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
              +   G++V+ G    +       IPLL  IP +G  LF++      + E     TP 
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 535 LI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 574


>gi|257487241|ref|ZP_05641282.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|238577781|gb|ACR46692.1| HrcC [Pseudomonas syringae pv. tabaci]
 gi|331009145|gb|EGH89201.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 699

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 104/287 (36%), Gaps = 23/287 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+++    + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 307 EKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   + +   F   LHALE   +   +  P++  +  Q A             ++S
Sbjct: 357 AGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI--TATS 414

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               ++     G  L   P  L      ++ L +  E  +  I       PS R     T
Sbjct: 415 ERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVST 474

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
              +   G++V+ G    +       IPLL  IP +G  LF++      + E     TP 
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 535 LI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 574


>gi|212711709|ref|ZP_03319837.1| hypothetical protein PROVALCAL_02784 [Providencia alcalifaciens DSM
           30120]
 gi|212685811|gb|EEB45339.1| hypothetical protein PROVALCAL_02784 [Providencia alcalifaciens DSM
           30120]
          Length = 567

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 101/297 (34%), Gaps = 24/297 (8%)

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           +V  G       S  A   S + + +  ++Q      + ++  L+     QV L + I +
Sbjct: 267 IVKRGNASNSAFSLVAHPDSNSLIVKGSQSQI--RYVRDLVKNLDNR-RRQVELSLWIID 323

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           + R  L  +G    +    +G                   F+   + D   F   + AL 
Sbjct: 324 ITRSELDNLGVNWEVGSFKAGGGSI--------------SFNRSTLPDSSKFLVQIDALS 369

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           +    + ++ P L       A F +      K         ++    YG ++   P +  
Sbjct: 370 KNGNSQIVSRPVLLTQENVPALFDNNTSFYAKL--QGERIATLEQVTYGTMISVMPRISG 427

Query: 325 PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
              + + +  E             N   +PS      +T   +    ++++ G  +D   
Sbjct: 428 GQSVEMEVNIEDGAESRDSSGKTSNVEGLPSVNRTSINTVARIAKDSSLLIGGYTRDQYI 487

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
             +  IPLL  IP +G LFR+S  N+++        P L+    + D  +  D   +
Sbjct: 488 DNESKIPLLGDIPWIGGLFRHSSTNQQKMVRLFLIQPRLLDENEVWDGRQFSDKTRI 544


>gi|1772618|gb|AAC31975.1| HrcC [Erwinia chrysanthemi]
          Length = 691

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 101/295 (34%), Gaps = 20/295 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ +++  ++ V +   I +V R  L ++         +     +  +     FVS 
Sbjct: 312 QQLIDKIDVP-QNLVNIDAIILDVDRTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS- 369

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                     D   F   + ALE       +A P++  +  Q A             ++ 
Sbjct: 370 ----------DFKRFSADIQALEGEGTASIVANPSVLTLENQPAVIDFSRTAFI--TATG 417

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               +V     G  L  TP V+  G    I L I  E    V     G     +     T
Sbjct: 418 ERVANVQPVTAGTSLQVTPRVVGHGSTSSIQLVIDIE-DGQVETNTEGTASGVKRGTVST 476

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +     +VL G   ++     + +PLL  IP +G LF + +      E     TP L
Sbjct: 477 QALIGENRALVLGGFHVEESGDRDKRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHL 536

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK--IYGPKEASEVEGQNYKGAIGF 471
           +            D+    +DA      R +K  ++G  E +  +  + +   GF
Sbjct: 537 IGDQNDPTRFVSADNRRQLNDAMGRVAQRNSKTDLFGTVENALRDLASGQTPAGF 591


>gi|254254350|ref|ZP_04947667.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
 gi|124898995|gb|EAY70838.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
          Length = 702

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 116/331 (35%), Gaps = 48/331 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222
           + ++N L+      V + VTI ++  D L  +G                        T  
Sbjct: 325 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLSGNTQY 383

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274
           +   +       G     + G F   G+    S    L        +AL +    +  ++
Sbjct: 384 NGSGNPPLTFGIGTSETGQTGAFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 443

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLSP-------- 325
           P + A+    A   +  Q   +       +  SVTT   G  +  TP ++          
Sbjct: 444 PKVLALDNTEAILENLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDDAARNAAAA 500

Query: 326 ----GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
                 + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  
Sbjct: 501 AGGPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLN 560

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDD 439
           K G+P LS IP++G LF+ +  +    E F   TP +V   +M   D S  +       D
Sbjct: 561 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASMYAPDGSPVNPGADAPAD 620

Query: 440 AKAFFFNR--VNKIYGPKEASEVEGQNYKGA 468
             A    R   N I  P     + G  ++ A
Sbjct: 621 PNALSMYRPPDNDIAVPLTPKPLPGTKFRAA 651


>gi|37522007|ref|NP_925384.1| hypothetical protein glr2438 [Gloeobacter violaceus PCC 7421]
 gi|35213006|dbj|BAC90379.1| glr2438 [Gloeobacter violaceus PCC 7421]
          Length = 493

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 134/366 (36%), Gaps = 61/366 (16%)

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149
            G  VG  N+                   D A     LR    +  + V+  ++++V  G
Sbjct: 162 LGAQVGSTNLGSTQPGAATT-------NPDPAATSGPLR---GELFVTVDARTNSLVAVG 211

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
                    RA+++++  L+Q    Q                   QV + V + +V  + 
Sbjct: 212 SP-------RALQIAQVQLAQLDVRQ------------------RQVMIDVKLVDVNLNN 246

Query: 210 LKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGG--DFSVKGVLDRFSFETVLHALE-- 264
           +  +GF+   + G+    +   AAD G  + +  G         L   +   +  A+   
Sbjct: 247 VSDLGFRLGGSAGNFQLGTVGGAADLGASYPAAVGLTGGGPGNTLIFNTLGALASAMALR 306

Query: 265 -----RATAIRTLAEPTLTAISG------QSASFTSGGQHLY---KTVSSSTGATSVTTH 310
                +  + R LA P L   SG       +A        +     T    TG ++ T  
Sbjct: 307 LDTAIQEGSARVLASPQLLVASGAGFSKPTAARVEITDDVVVGATITTDRETGQSTTTIK 366

Query: 311 --DYGVVLHFTP-TVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKA--DTTVELP 363
               GV L      V   G + + ++ +VS    +    AG++ +   R+      + L 
Sbjct: 367 VDKVGVSLEIAVYQVDDNGFVDVSLKPQVSSINDIQRDAAGNLVTLLTRRNLDIQRLRLR 426

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G T V+ G++++  +QL + +PLL  +P+LGALFR      E  E+ +  TP ++K   
Sbjct: 427 DGETFVIGGVIREIDRQLVQKMPLLGDLPVLGALFRFQSNQHERREVALMVTPHILKESV 486

Query: 424 MRDLSR 429
                 
Sbjct: 487 HEAAPL 492


>gi|312958833|ref|ZP_07773352.1| type III secretion system rscC [Pseudomonas fluorescens WH6]
 gi|311286603|gb|EFQ65165.1| type III secretion system rscC [Pseudomonas fluorescens WH6]
          Length = 713

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 89/258 (34%), Gaps = 18/258 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ L++A +  V +   I ++ R  L + G +     S           F G     
Sbjct: 320 RELISQLDVARKL-VEIDAIILDIERTQLHEFGIKWGFQNSR----------FRGGVNMA 368

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   +  R  F   + ALE       ++ P++  +  Q A            +++ 
Sbjct: 369 PGTSSQLSIEHRDRFYADVRALESRGLATMVSNPSVLTLENQPAVIDFNRTQY---LTAG 425

Query: 302 TGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               ++     G      P V++     +I L +  E             P  R  K  T
Sbjct: 426 RENATILPITVGTSFQVVPRVITSRGGHQIHLAVDIEDGNFDESNPDRLGPDVRRGKVST 485

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPF 417
              +    ++V+ G    +    +  +PLL  IP+LG ALF ++       E     TP 
Sbjct: 486 QAVMAEKRSLVVGGFHVTESSDKQRKVPLLGDIPLLGKALFSSTERQNNRRERLFILTPR 545

Query: 418 LVKPVAMRDLSRPDDHYS 435
           ++   +      P D   
Sbjct: 546 VIGDQSDPSRYLPADDQV 563


>gi|167906931|ref|ZP_02494136.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei NCTC 13177]
          Length = 588

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 100/263 (38%), Gaps = 29/263 (11%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237
           ++  L+I     + ++  I E+  D+L++IG       S      G   +   D+ G   
Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386

Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281
                  +  G+  V       S               ++AL+  + ++  A P +  + 
Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVNALQSTSKVKIDASPLVATLD 446

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338
              A   +  +   K   S   +  + +   GV L   P ++  G   RI + +      
Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            + G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|312597809|gb|ADQ89924.1| RscC [Pseudomonas fluorescens]
          Length = 716

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 90/280 (32%), Gaps = 17/280 (6%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V +   I ++ R  L ++    ++               GG  +   G  S   + D   
Sbjct: 336 VEIDAIILDIDRTQLAELASNWNVESGDL---------IGGASMIRPGASSTVFIQDYGD 386

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L ALE       +A P++  +  Q A            +       +V     G  
Sbjct: 387 FSAQLRALEGRGLASVVANPSVLTLENQPAVIDFSRTEYISAIGERV--ATVEPITAGTS 444

Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P  +  G   +I + ++ E             PS R     T   +    ++V+ G
Sbjct: 445 LQVVPHAIETGGRNQIQMSLEIEDGRIEPSEVGQQTPSVRRGVVSTQAVMGESRSLVVGG 504

Query: 373 LLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
              ++     E +P L +IP++G  LF ++       E     TP L+            
Sbjct: 505 FHTEETGDNLERVPWLGRIPLIGPLLFSSTTRETSRRERVFILTPRLIGDQVDPARYISA 564

Query: 432 DHYSVEDDAKAFFFNRVN--KIYGPKEASEVEGQNYKGAI 469
                 D A A    R N  +  G  E S+V  Q   G I
Sbjct: 565 LDREQVDSAMARLEERRNGTRPVGRIEVSDVLAQLADGNI 604


>gi|330895850|gb|EGH28136.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 640

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 105/291 (36%), Gaps = 23/291 (7%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L+++    + +   I ++ R+ L ++  + +    S           GG 
Sbjct: 244 KAMYEKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVN---------GGA 293

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LHALE   +   +  P++  +  Q A            
Sbjct: 294 NMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY--L 351

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S    ++     G  L  TP  L      ++ L +  E  +  I       PS R  
Sbjct: 352 TATSERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKG 411

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       +PLL  IP +G  LF++      + E    
Sbjct: 412 NVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGKLLFQSRSRELSQRERLFI 471

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            TP L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 472 LTPRLI-----GDQVNPARYVQNGNPRDVD--DKMKRIKERRDGGELPTRG 515


>gi|302129976|ref|ZP_07255966.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 699

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 104/291 (35%), Gaps = 23/291 (7%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L++     + +   I ++ R+ L ++  + +    S G         GG 
Sbjct: 303 KAMYQKLVKELDVPRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGA 352

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LHALE   +   +  P++  +  Q A            
Sbjct: 353 NLFDAGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--L 410

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S  A  +     G  L   P  L      ++ + +  E  +  +       PS R  
Sbjct: 411 TATSERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRG 470

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       IPLL  IP +G  LF++      + E    
Sbjct: 471 NVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFI 530

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            TP L+      D   P  +    +       +++ KI   ++  E+  + 
Sbjct: 531 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKKIKERRDGGELPTRG 574


>gi|162533078|ref|NP_791216.2| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213968270|ref|ZP_03396414.1| outer membrane type III secretion hrcc [Pseudomonas syringae pv.
           tomato T1]
 gi|301383405|ref|ZP_07231823.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061709|ref|ZP_07253250.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato K40]
 gi|119388972|gb|AAO54911.2| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213926908|gb|EEB60459.1| outer membrane type III secretion hrcc [Pseudomonas syringae pv.
           tomato T1]
          Length = 699

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 104/291 (35%), Gaps = 23/291 (7%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L++     + +   I ++ R+ L ++  + +    S G         GG 
Sbjct: 303 KAMYQKLVKELDVPRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGA 352

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LHALE   +   +  P++  +  Q A            
Sbjct: 353 NLFDAGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--L 410

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S  A  +     G  L   P  L      ++ + +  E  +  +       PS R  
Sbjct: 411 TATSERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRG 470

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       IPLL  IP +G  LF++      + E    
Sbjct: 471 NVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFI 530

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            TP L+      D   P  +    +       +++ KI   ++  E+  + 
Sbjct: 531 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKKIKERRDGGELPTRG 574


>gi|170289478|ref|YP_001739716.1| type II and III secretion system protein [Thermotoga sp. RQ2]
 gi|170176981|gb|ACB10033.1| type II and III secretion system protein [Thermotoga sp. RQ2]
          Length = 387

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 101/237 (42%), Gaps = 7/237 (2%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K +  ++I    QV + V + EV +D   ++G        S G  + F  ++       
Sbjct: 154 EKDLEKIDIPIP-QVKISVIVTEVSKDYSNELGLN--SLDYSFGSGQEFNENWSATLGLV 210

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  +V+  +        L  LE     +  A+P +   SG+ AS   G + +   + + 
Sbjct: 211 TGLINVQTDVFG-QILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQVV-LLQAE 268

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
              + + + D GV +   P V+    + L +  +VS            + +  +  TT+ 
Sbjct: 269 GAVSRIESIDVGVSIDIQPRVMDKEELELTLSPKVSHFAG--EKLGTFAVKQNELSTTLF 326

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           L +G T+V++G   +D  Q   G+P+L+KIP++  LF  +     + E++I     +
Sbjct: 327 LKNGQTVVISGATIEDNAQTNSGVPILNKIPLIRYLFGGTMKKDSQKELYIFIKAEI 383


>gi|330872930|gb|EGH07079.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 699

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 104/291 (35%), Gaps = 23/291 (7%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L++     + +   I ++ R+ L ++  + +    S G         GG 
Sbjct: 303 KAMYQKLVKELDVPRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGA 352

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LHALE   +   +  P++  +  Q A            
Sbjct: 353 NLFDAGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--L 410

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S  A  +     G  L   P  L      ++ + +  E  +  +       PS R  
Sbjct: 411 TATSERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRG 470

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       IPLL  IP +G  LF++      + E    
Sbjct: 471 NVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFI 530

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            TP L+      D   P  +    +       +++ KI   ++  E+  + 
Sbjct: 531 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKKIKERRDGGELPTRG 574


>gi|297622120|ref|YP_003710257.1| putative general secretion pathway protein D [Waddlia chondrophila
           WSU 86-1044]
 gi|297377421|gb|ADI39251.1| putative general secretion pathway protein D [Waddlia chondrophila
           WSU 86-1044]
          Length = 865

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 101/271 (37%), Gaps = 34/271 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--- 238
           K+++  L++  +  V ++V + E         G      GS++      +  + G     
Sbjct: 530 KEIIAKLDVP-KKMVQIEVLLFERILQRDISYGLNLLKIGSAASQKHRTSTVWAGGLDQC 588

Query: 239 --VSEGGDFSV--KGVLDRF-----------SFETVLHALERATAIRTLAEPTLTAISGQ 283
             +++    +   +GV+D F           +F+     L     +   A P++ AI+  
Sbjct: 589 EAIADASTIATCGRGVIDFFISRKKTDSGIPAFDLAYKFLMSQDNVYLTASPSVVAINQT 648

Query: 284 SASFTSGGQHLYKTVSSSTGATSV------TTHDYGVVLHFTPTVL---------SPGRI 328
            A  +   +      ++ T + +V      T   YG+ +  TP +              I
Sbjct: 649 EAVISIQDERSILVGTNITDSAAVPAQNAFTRAQYGITIRVTPIIHYSEDTDFGDPENYI 708

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L  +               P    R+    V +P G  +++ GL +     + + IP L
Sbjct: 709 TLNSEITFDTIPPSQQNSSQPQVNRRQIINQVNIPDGQAVIIGGLQRKQGSDMCDKIPFL 768

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
            ++P LG LF  ++   EETE+ I  TP ++
Sbjct: 769 GELPGLGKLFSTTQLTDEETELVIFMTPKII 799


>gi|303252187|ref|ZP_07338355.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302648970|gb|EFL79158.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 190

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 5/168 (2%)

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            +SG++A    GG+  +       G  SV   ++G+ L     V    RI L +   VS 
Sbjct: 1   MLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDRIRLVLSQSVST 59

Query: 339 PVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                   +  +P +  R++ +T E+ +G + +++GLL     +  + +P+L  IPILGA
Sbjct: 60  IAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKVPVLGDIPILGA 119

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
            FRN+  +RE  E+ + AT  LVKPV    +  P   +      + FF
Sbjct: 120 FFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFF 165


>gi|254491741|ref|ZP_05104920.1| Bacterial type II and III secretion system protein [Methylophaga
           thiooxidans DMS010]
 gi|224463219|gb|EEF79489.1| Bacterial type II and III secretion system protein [Methylophaga
           thiooxydans DMS010]
          Length = 743

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 113/297 (38%), Gaps = 31/297 (10%)

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
              L     ++   S+ +++++ ++I    QV L++ I  V         F   +   S 
Sbjct: 289 HNMLVVRSDDKSVLSNIRQLIHSMDIPVP-QVMLEMRILSVILGEDFNSIFNFELQ-PSG 346

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G      A  G   +   G F  + +  R      L  LE    +R L+ P + A + + 
Sbjct: 347 GNQSQQPALLGNNALLNSGTFVYEFLNSR--LRANLEFLEENNRVRVLSNPMIVASNHRQ 404

Query: 285 ASFTSG-------GQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGL 330
           A    G       G   +  +  +            V   D G+ L  TP +     + L
Sbjct: 405 AELFIGAETLLTDGFEFFPAIIDNGVVIQPSYVQAIVNREDIGITLRITPRINGDETVEL 464

Query: 331 RIQTEVSEPVIGVNAGDMP------------SYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            I+ E S    G  +  +             +    +   TV    G T+ + GL++   
Sbjct: 465 LIEQENSTVNPGGGSVPITDGNGTVQNLPVDTVDTARLTGTVMAKDGLTVAVGGLIRTSK 524

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434
            + +  +P+LS+IP+LG +FR++  + +ETE  +  TP ++  P     L + D+ +
Sbjct: 525 NKNERKVPVLSEIPVLGRIFRSTTESEQETETVLLITPRVMNVPEESEKLRQTDNRF 581


>gi|330957480|gb|EGH57740.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 703

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 104/291 (35%), Gaps = 23/291 (7%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L+++    + +   I ++ R+ L ++  + +    S G         GG 
Sbjct: 307 KAMYEKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGV 356

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LH LE   +   +  P++  +  Q A            
Sbjct: 357 NMFDAGTTSTMFIQNAGKFTAELHTLEGNGSASVIGNPSILTLENQPAVIDFSRTEY--L 414

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S    ++     G  L  TP  L      ++ L +  E  +  I       PS R  
Sbjct: 415 TATSERVANIEPITAGTSLQVTPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKG 474

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       IPLL  IP +G  LF++        E    
Sbjct: 475 NVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSNRERLFI 534

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            TP L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 535 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 578


>gi|281413054|ref|YP_003347133.1| type II and III secretion system protein [Thermotoga naphthophila
           RKU-10]
 gi|281374157|gb|ADA67719.1| type II and III secretion system protein [Thermotoga naphthophila
           RKU-10]
          Length = 387

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 6/225 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV + V + EV +D   ++G        S G  + F  ++        G  +V+  +  
Sbjct: 165 PQVKISVIVTEVSKDYSNELGLN--SLDYSFGSGQEFNENWSATLGLVTGLINVQTDVFG 222

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 L  LE     +  A+P +   SG+ AS   G + +   + +    + + + D G
Sbjct: 223 -QILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQVV-LLQAEGAVSRIESIDVG 280

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V +   P V+    + L +  +VS            + +  +  TT+ L +G T+V++G 
Sbjct: 281 VSIDIQPRVMDKEELELTLSPKVSHFAG--EKLGTFAVKQNELSTTLFLKNGQTVVISGA 338

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             +D  Q   G+P+L+KIP++  LF  +     + E++I     +
Sbjct: 339 TIEDNAQTNSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383


>gi|167587171|ref|ZP_02379559.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia ubonensis Bu]
          Length = 341

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 108/268 (40%), Gaps = 33/268 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------SITGSSSGPSK 228
             ++ LL++     + ++  + E+    LKQ+G                 +T  +S  + 
Sbjct: 79  PDLIALLDVK-PRLIEIEARMIEIDEGALKQLGIDWRAHNSHFDLQTGTGLTSQNSYANG 137

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVL-----------HALERATAIRTLAEPTL 277
           S    FG   +S     SV       S   VL           +ALE A   RT A P +
Sbjct: 138 SLNPTFGSISLSGNDSVSVPASPLGLSLTAVLGDAGRYLLARINALESANQARTDASPKV 197

Query: 278 TAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQ 333
           T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L ++
Sbjct: 198 TTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVEEGGRTQIKLDVR 254

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+P+
Sbjct: 255 I-VDGELSRQTVDNIPVIVSTEINTQAFIEQGQALLIAGYKMDARSSTQSGVPVLSKLPL 313

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKP 421
           +G LFR++      +E     TP +++P
Sbjct: 314 IGGLFRSTDKEDSHSERLFLVTPRVIEP 341


>gi|330812422|ref|YP_004356884.1| type III secretion protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380530|gb|AEA71880.1| putative type III secretion protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 716

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 90/280 (32%), Gaps = 17/280 (6%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V +   I ++ R  L ++    ++               GG  +   G  S   + D   
Sbjct: 336 VEIDAIILDIDRTQLAELASNWNVESGDL---------IGGASMIRPGASSTVFIQDYGD 386

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L ALE       +A P++  +  Q A            +       +V     G  
Sbjct: 387 FSAQLRALEGRGLASVVANPSVLTLENQPAVIDFSRTEYISAIGERV--ATVEPITAGTS 444

Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P  +  G   +I + ++ E             PS R     T   +    ++V+ G
Sbjct: 445 LQVVPHAIETGGRNQIQMSLEIEDGRIEPSEVGQQTPSVRRGVVSTQAVMGESRSLVVGG 504

Query: 373 LLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
              ++     E +P L +IP++G  LF ++       E     TP L+            
Sbjct: 505 FHTEETGDNLERVPWLGRIPLIGPLLFSSTTRETSRRERVFILTPRLIGDQVDPARYISA 564

Query: 432 DHYSVEDDAKAFFFNRVN--KIYGPKEASEVEGQNYKGAI 469
                 D A A    R N  +  G  E S+V  Q   G I
Sbjct: 565 LDREQVDSAMARLEERRNGTRPVGRIEVSDVLAQLADGNI 604


>gi|217425412|ref|ZP_03456906.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
 gi|217391663|gb|EEC31691.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
          Length = 588

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 108/304 (35%), Gaps = 35/304 (11%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV------MNLLNIAGEDQVTLKVTI 202
           G  RT + S    EL          +        ++      +  L+I     + ++  I
Sbjct: 287 GAPRTEEASAERDELPIIQPDPMTNSVLIRDLPDRLAQYAPLIQQLDIR-PRLIEIQAHI 345

Query: 203 AEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-------FVSEGGDFSVKGVL 251
            E+  D+L++IG       S      G   +   D+ G          +  G+  V    
Sbjct: 346 MEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQINPFFGTTTLAGNAVVNAAP 405

Query: 252 DRFS-----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              S               + AL+  + ++  A P +  +    A   +  +   K   S
Sbjct: 406 AGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKV--S 463

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
              +  + +   GV L   P ++  G   RI + +       + G    ++P     + +
Sbjct: 464 GYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DGQLTGDQVDNLPVITSSEIN 522

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T   +  G ++++AG   D       G+P LSKIP+LGALFR    ++   E     +P 
Sbjct: 523 TQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPR 582

Query: 418 LVKP 421
           ++ P
Sbjct: 583 IIDP 586


>gi|254264333|ref|ZP_04955198.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
 gi|254215335|gb|EET04720.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
          Length = 588

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237
           ++  L+I     + ++  I E+  D+L++IG       S      G   +   D+ G   
Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386

Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281
                  +  G+  V       S               + AL+  + ++  A P +  + 
Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARHLMARVSALQSTSKVKIDASPLVATLD 446

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338
              A   +  +   K   S   +  + +   GV L   P ++  G   RI + +      
Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            + G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|307131207|ref|YP_003883223.1| type III secretion outermembrane pore forming protein
           (YscC,MxiD,HrcC, InvG) [Dickeya dadantii 3937]
 gi|306528736|gb|ADM98666.1| Type III secretion outermembrane pore forming protein
           (YscC,MxiD,HrcC, InvG) [Dickeya dadantii 3937]
          Length = 689

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 91/272 (33%), Gaps = 18/272 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +++++ +++  ++ V +   I +V R  L ++         +     +  +     FVS 
Sbjct: 310 QQLIDKIDVP-QNLVNIDAIILDVDRTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS- 367

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                     D   F   + ALE       +A P++  +  Q A             ++ 
Sbjct: 368 ----------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSRTAFI--TATG 415

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               +V     G  L  TP V+  G    I L I  E    V     G     +     T
Sbjct: 416 ERVANVQPVTAGTSLQVTPRVVGRGSLSSIQLVIDIE-DGQVETNTEGTASGVKRGTVST 474

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +     +VL G   ++     + +PLL  IP +G LF + +      E     TP L
Sbjct: 475 QALIGENRALVLGGFHVEESGDRDKRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHL 534

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           +            D+    +DA      R +K
Sbjct: 535 IGDQNDPTRFVSADNRRQLNDAMGRVAQRNSK 566


>gi|126445154|ref|YP_001062980.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 668]
 gi|126224645|gb|ABN88150.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 668]
          Length = 588

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237
           ++  L+I     + ++  I E+  D+L++IG       S      G   +   D+ G   
Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDDDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386

Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281
                  +  G+  V       S               + AL+  + ++  A P +  + 
Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLD 446

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338
              A   +  +   K   S   +  + +   GV L   P ++  G   RI + +      
Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            + G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|14719865|gb|AAK73229.1| SctC [Burkholderia pseudomallei]
          Length = 588

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237
           ++  L+I     + ++  I E+  D+L++IG       S      G   +   D+ G   
Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386

Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281
                  +  G+  V       S               + AL+  + ++  A P +  + 
Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLD 446

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338
              A   +  +   K   S   +  + +   GV L   P ++  G   RI + +      
Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            + G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|126456443|ref|YP_001075927.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1106a]
 gi|134282510|ref|ZP_01769214.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
 gi|167742975|ref|ZP_02415749.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 14]
 gi|167849982|ref|ZP_02475490.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei B7210]
 gi|167898588|ref|ZP_02485989.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 7894]
 gi|167915290|ref|ZP_02502381.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 112]
 gi|167923124|ref|ZP_02510215.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei BCC215]
 gi|242313713|ref|ZP_04812730.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
 gi|254186704|ref|ZP_04893220.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254194157|ref|ZP_04900589.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei S13]
 gi|254301616|ref|ZP_04969060.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|126230211|gb|ABN93624.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106a]
 gi|134246067|gb|EBA46157.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
 gi|157811506|gb|EDO88676.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|157934388|gb|EDO90058.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169650908|gb|EDS83601.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei S13]
 gi|242136952|gb|EES23355.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
          Length = 588

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237
           ++  L+I     + ++  I E+  D+L++IG       S      G   +   D+ G   
Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386

Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281
                  +  G+  V       S               + AL+  + ++  A P +  + 
Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLD 446

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338
              A   +  +   K   S   +  + +   GV L   P ++  G   RI + +      
Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            + G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|53722417|ref|YP_111402.1| type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|167820148|ref|ZP_02451828.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 91]
 gi|52212831|emb|CAH38865.1| putative type III secretion system protein [Burkholderia
           pseudomallei K96243]
          Length = 588

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237
           ++  L+I     + ++  I E+  D+L++IG       S      G   +   D+ G   
Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDDDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386

Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281
                  +  G+  V       S               + AL+  + ++  A P +  + 
Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLD 446

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338
              A   +  +   K   S   +  + +   GV L   P ++  G   RI + +      
Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            + G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|71737444|ref|YP_273539.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557997|gb|AAZ37208.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|170523102|gb|ACB20761.1| type III outer-membrane secretion protein HrcC [Pseudomonas
           syringae pv. glycinea]
 gi|320322961|gb|EFW79051.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329916|gb|EFW85904.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330874593|gb|EGH08742.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 699

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 105/287 (36%), Gaps = 23/287 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+++    + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 307 EKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   + +   F + LHALE   +   +  P++  +  Q A             ++S
Sbjct: 357 AGTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI--TATS 414

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               ++     G  L   P  L      ++ L +  E  +  I       PS R     T
Sbjct: 415 ERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVST 474

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
              +   G++V+ G    +       IPLL  IP +G  LF++      + E     TP 
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 535 LI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 574


>gi|330984958|gb|EGH83061.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 703

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 103/287 (35%), Gaps = 23/287 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+++    + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 311 EKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNMFD 360

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   + +   F   LH LE   +   +  P++  +  Q A             ++S
Sbjct: 361 AGTTSTMFIQNAGKFTAELHTLEGNGSASVIGNPSILTLENQPAVIDFSRTEY--LTATS 418

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               ++     G  L  TP  L      ++ L +  E  +  I       PS R     T
Sbjct: 419 ERVANIEPITAGTSLQVTPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVST 478

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
              +   G++V+ G    +       +PLL  IP +G  LF++        E     TP 
Sbjct: 479 QAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSNRERLFILTPR 538

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 539 LI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 578


>gi|42562008|gb|AAS20450.1| HrcC [Pseudomonas syringae pv. phaseolicola]
          Length = 699

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 105/287 (36%), Gaps = 23/287 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+++    + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 307 EKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   + +   F + LHALE   +   +  P++  +  Q A             ++S
Sbjct: 357 AGTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI--TATS 414

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               ++     G  L   P  L      ++ L +  E  +  I       PS R     T
Sbjct: 415 ERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGKIDISDINDTQPSVRKGNVST 474

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
              +   G++V+ G    +       IPLL  IP +G  LF++      + E     TP 
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 535 LI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 574


>gi|261344599|ref|ZP_05972243.1| type III secretion outer membrane pore, YscC/HrcC family
           [Providencia rustigianii DSM 4541]
 gi|282567513|gb|EFB73048.1| type III secretion outer membrane pore, YscC/HrcC family
           [Providencia rustigianii DSM 4541]
          Length = 567

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 86/251 (34%), Gaps = 21/251 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L + I ++ R  L  +G    +    +G                   F+   + D
Sbjct: 312 RRQVELSLWIIDITRSELDNLGVNWEVGSFKAGGG--------------AISFNRSTLPD 357

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F   + AL +    + ++ P L       A F +      K         ++    Y
Sbjct: 358 TSKFLVQIDALSKNGNSQIVSRPVLLTQENVPALFDNNTSFYAKL--QGERIATLEQVTY 415

Query: 313 GVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           G ++   P + +   + + +  E             N   +PS      +T   +    +
Sbjct: 416 GTMISVMPRISAGQSVEMEVNIEDGAENRDSSGKTSNVEGLPSVNRTSINTVARIAKNSS 475

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +++ G  ++   + +  IPLL  IP +G LF ++  N+++        P L+      D 
Sbjct: 476 LLIGGYTREQYVENESKIPLLGDIPWVGRLFSHTSTNQQKMVRIFLIQPRLLDENEAWDG 535

Query: 428 SRPDDHYSVED 438
            +  + + + +
Sbjct: 536 RQFSESHRITE 546


>gi|167724007|ref|ZP_02407243.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei DM98]
 gi|254183789|ref|ZP_04890381.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
 gi|184214322|gb|EDU11365.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
          Length = 588

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237
           ++  L+I     + ++  I E+  D+L++IG       S      G   +   D+ G   
Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386

Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281
                  +  G+  V       S               + AL+  + ++  A P +  + 
Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLD 446

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338
              A   +  +   K   S   +  + +   GV L   P ++  G   RI + +      
Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            + G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|331015110|gb|EGH95166.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 699

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 104/291 (35%), Gaps = 23/291 (7%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L++     + +   I ++ R+ L ++  + +    S G         GG 
Sbjct: 303 KAMYQKLVKELDVPRNL-IEIDAVILDIDRNELAELSSRWNFNTGSVG---------GGA 352

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LHALE   +   +  P++  +  Q A            
Sbjct: 353 NLFDAGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--L 410

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S  A  +     G  L   P  L      ++ + +  E  +  +       PS R  
Sbjct: 411 TATSERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRG 470

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       IPLL  IP +G  LF++      + E    
Sbjct: 471 NVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFI 530

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            TP L+      D   P  +    +       +++ KI   ++  E+  + 
Sbjct: 531 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKKIKERRDGGELPTRG 574


>gi|161503511|ref|YP_001570623.1| hypothetical protein SARI_01587 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864858|gb|ABX21481.1| hypothetical protein SARI_01587 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 484

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 10/231 (4%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  + + V I +V    + Q+G       S  G   +F +   G    +   FS   + D
Sbjct: 253 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNS---GPNEGDTNGFSTV-ISD 308

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +F   L+ALE+++    L++P++  ++   A         + T         + +   
Sbjct: 309 TSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTKLQGEKVAKLESITT 366

Query: 313 GVVLHFTPTVLSPG---RIGLRIQ-TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           G +L  TP +L+     +I L +   +  +         +P  +  +  +   L +G ++
Sbjct: 367 GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETNPLPEVQNSEIASQATLLAGQSL 426

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +L G  +    + +  IPLL  IP+LG LFRN                 +V
Sbjct: 427 LLGGFKQGKQIRSQNKIPLLGDIPVLGHLFRNDTTQVHSVIRLFLIKASVV 477


>gi|62297323|sp|P35819|PILQ_NEIGO RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           AltName: Full=Outer membrane protein omc; Flags:
           Precursor
 gi|1173875|gb|AAC43603.1| PilQ [Neisseria gonorrhoeae]
 gi|1589217|prf||2210365A pilQ gene
          Length = 720

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 96/244 (39%), Gaps = 21/244 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K+++ L++    QV ++  I E      + +G +   TG     +++ A  +G      
Sbjct: 464 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 522

Query: 242 GGD----------------FSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           GGD                    G  D   +    L A E  +  +TLA P +   + + 
Sbjct: 523 GGDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKTKTLANPRVLTQNRKE 582

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   + S G  S  T      + L  T  +   G+I + ++     P   
Sbjct: 583 AKIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLTVTANITPDGQIIMTVKINKDSPRQC 642

Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +  + +     +  +T   + +GGT+++ G+ +++       +PLL+  P+     ++S
Sbjct: 643 ASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLATSPLSATSLKHS 702

Query: 402 RFNR 405
             NR
Sbjct: 703 GKNR 706


>gi|262039342|ref|ZP_06012655.1| general secretion pathway protein D [Leptotrichia goodfellowii
           F0264]
 gi|261746604|gb|EEY34130.1| general secretion pathway protein D [Leptotrichia goodfellowii
           F0264]
          Length = 385

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 13/241 (5%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-FAADFGGKFVS 240
           +K++  L+   +DQ+ +K TI +   ++ +++G   +I  ++  P+KS   A F    ++
Sbjct: 141 RKIIKSLD-RPKDQIIIKGTIIDTSSNLFEKLGVDWNINSNNPEPAKSNLVAKFLNGEIT 199

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KT 297
            G  F+  G      F    + L     I+  A PTL  +  +        + L    KT
Sbjct: 200 IGSIFASGGKFLGIDF----NLLRENGDIKIEAMPTLLIMEDEEGELKVTEEVLVGEKKT 255

Query: 298 VSSSTGATSVTTHDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRV 353
             ++T  T     + G+V    P    +    +I L+I TE+S   +  N +    + + 
Sbjct: 256 TKNNTDYTEPIFSEAGIVFKILPEIRKINGEKKILLKIDTEISNFKLTSNYSSGSGAKQK 315

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            +  T + L +GG+  + GL ++  ++  + +P  S IPI+G LF+  R N+E  +I+I 
Sbjct: 316 NQTKTIITLNNGGSTFIGGLKQNVTKETIKKVPFFSSIPIIGPLFKYKRNNKEVRDIYIE 375

Query: 414 A 414
            
Sbjct: 376 I 376


>gi|320334143|ref|YP_004170854.1| type II and III secretion system protein [Deinococcus maricopensis
           DSM 21211]
 gi|319755432|gb|ADV67189.1| type II and III secretion system protein [Deinococcus maricopensis
           DSM 21211]
          Length = 676

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 111/247 (44%), Gaps = 30/247 (12%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ ++V I E+     + +G   +      G      A  G + +     F     L  
Sbjct: 440 PQINVQVRIQEINETAARTLGVDWNAGF---GNFVVRIAQTGLQAL-----FDPTRALAG 491

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQ----------------SASFTSGGQHLYKT 297
            +    L+ALE     + + + ++T  SGQ                SA+  SGG+     
Sbjct: 492 INLGATLNALETQNMTKRVYDGSVTMQSGQRSVGTAGGAQNASSGASATIKSGGRLEVTI 551

Query: 298 VSSSTGATSVTTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRV 353
            S S     V   DYGV L F  P V   G I LR++ +V++P   +  G +P+   +  
Sbjct: 552 PSESGNI--VRQIDYGVNLDFIDPQVAPDGTITLRVRGQVNQPASPITGGTLPNLLNFTN 609

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            +A TT+   SG T++L+GLL  +  + + G+P LS +P++G LF   + ++ ++++ + 
Sbjct: 610 SEAQTTITFKSGQTVLLSGLLGTNESRNRTGVPFLSSLPVIGGLFGTEQTSKTQSQLLVV 669

Query: 414 ATPFLVK 420
            T  +V+
Sbjct: 670 ITGTVVR 676


>gi|312602771|ref|YP_004022616.1| type III secretion outer membrane pore SctC [Burkholderia
           rhizoxinica HKI 454]
 gi|306431574|emb|CBK52126.1| type III secretion outer membrane pore SctC [Burkholderia
           rhizoxinica HKI 454]
 gi|312170085|emb|CBW77097.1| type III secretion outer membrane pore SctC [Burkholderia
           rhizoxinica HKI 454]
          Length = 645

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 102/263 (38%), Gaps = 28/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAAD 233
           + +++ L++     V ++  I EV  D LKQIG             TG+      S+   
Sbjct: 386 QSLIDALDVK-PRLVEIEAHIIEVDDDALKQIGVDWRAHNSHVDLQTGNGLHSPSSYDGT 444

Query: 234 FGGKFVSEGGDF-----------SVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAI 280
               F S   D            S+  VL          + AL+ A   R  A P +  +
Sbjct: 445 LNPTFTSNSSDGTTVISTAPLGASLTAVLGNAGRYLLARVDALQSANLARIDASPKVATL 504

Query: 281 SGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSE 338
           S   A      +   +    +S    SV+T   GV L   P  V   GR  ++++  + +
Sbjct: 505 SNAEAVMDHKTRFFVRVAGYTSADLYSVST---GVSLRVRPLVVEEDGRTRIKLEVHIED 561

Query: 339 PVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             +     D +P       +T   +    ++++AG   D    L+ GIPLLSKIP++G L
Sbjct: 562 GQVTNQLVDHIPVITTSTINTEAFVGQNESLLIAGYRTDSSSNLETGIPLLSKIPLIGGL 621

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           FR     R   E     +P +++
Sbjct: 622 FRYRSDQRSHMERIFLLSPRIIE 644


>gi|237507548|ref|ZP_04520263.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
 gi|234999753|gb|EEP49177.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
          Length = 588

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237
           ++  L+I     + ++  I E+  D+L++IG       S      G   +   D+ G   
Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386

Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281
                  +  G+  V       S               + AL+  + ++  A P +  + 
Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLD 446

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338
              A   +  +   K   S   +  + +   GV L   P ++  G   RI + +      
Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            + G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|330963059|gb|EGH63319.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 649

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 104/291 (35%), Gaps = 23/291 (7%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L++     + +   I ++ R+ L ++  + +    S G         GG 
Sbjct: 303 KAMYQKLVKELDVPRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGA 352

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LHALE   +   +  P++  +  Q A            
Sbjct: 353 NLFDAGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--L 410

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S  A  +     G  L   P  L      ++ + +  E  +  +       PS R  
Sbjct: 411 TATSERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRG 470

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       IPLL  IP +G  LF++      + E    
Sbjct: 471 NVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFI 530

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            TP L+      D   P  +    +       +++ KI   ++  E+  + 
Sbjct: 531 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKKIKERRDGGELPTRG 574


>gi|257125412|ref|YP_003163526.1| type II and III secretion system protein [Leptotrichia buccalis
           C-1013-b]
 gi|257049351|gb|ACV38535.1| type II and III secretion system protein [Leptotrichia buccalis
           C-1013-b]
          Length = 400

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 125/305 (40%), Gaps = 40/305 (13%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
           R++  +   L  F     I ++   + ++ +G    I++ +R ++  +            
Sbjct: 120 RNVKDITEKLNGFFGFEVIGID---NKIIFNGDESKIEEMRRIIKSLDK----------- 165

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGG 236
                          ++QV +K TI +   ++ +++G   SI   ++  +K +  A F  
Sbjct: 166 --------------EKEQVIIKGTIIDTSSNLFERLGIDWSINSDNANATKDNLVAKFLN 211

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295
             VS    FS  G      F    + L+    IR  A PTL  +  +        + L  
Sbjct: 212 GEVSIASIFSKGGRFLGIDF----NLLKENGDIRIEAMPTLMIMENEEGELKVTEEVLVG 267

Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVNAGDMP- 349
             KT    T        + G+V    P    +    +I L+I TE+S   +  +      
Sbjct: 268 EKKTTKKDTEYVEPIFSEAGIVFKINPEIRKINGIKKILLKIDTEISNFKLTSSYNASSG 327

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           + +  +  TT+ L +GG+  + GL +D  ++    +P+LSKIPI+G LF+  R NRE  +
Sbjct: 328 AKQKNQTKTTITLNNGGSTFIGGLKQDVSKETIRRVPVLSKIPIVGPLFKYRRTNRELRD 387

Query: 410 IFIAA 414
           I+I  
Sbjct: 388 IYIEI 392


>gi|205352890|ref|YP_002226691.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272671|emb|CAR37581.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|309243418|gb|ADO51994.1| SsaC [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|326627962|gb|EGE34305.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 497

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G       + D  +F   L+ALE+++    L++P++  ++   A         + T 
Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP +L+     +I L +  +  +     +  D +P  +  
Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLDLNIQDGQQSDTQSETDPLPEVQNS 425

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  +   L +G +++L G  +      +  IPLL  IP++G LFRN              
Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485

Query: 415 TPFLV 419
              +V
Sbjct: 486 KASVV 490


>gi|94496757|ref|ZP_01303332.1| putative type III secretion protein YscC [Sphingomonas sp. SKA58]
 gi|94423770|gb|EAT08796.1| putative type III secretion protein YscC [Sphingomonas sp. SKA58]
          Length = 599

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 28/257 (10%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + + ++  L++A    V L+ TI ++  D L+++G            S  + A FGG  V
Sbjct: 319 AYEGLVRSLDVA-PQIVELEATIIDINVDRLRELGINWRFR------SGDWGALFGGDIV 371

Query: 240 SEGGD--------------FSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQS 284
              G+               S+ G++   + F   + ALE   A + ++ P L  +S   
Sbjct: 372 RRTGNPLTDSLNTGSVNRGLSLSGIIGANNEFIARISALEEKGAAKVVSRPQLVTLSNVE 431

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVI 341
           A F        +          +     G VL   P VL      RI + +  E    + 
Sbjct: 432 AVFDRTRTFYVRVAGDR--QVDLFNVTAGTVLRVNPHVLVDNGQPRIRMVVNVEDGALLD 489

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G     +P       +T   +  G +++L GL  +     +  IP+L +IP+LG LF++ 
Sbjct: 490 G-TVDRIPVVERASVNTQALIAEGESLLLGGLTVNSDMDAETAIPVLGQIPVLGELFKSR 548

Query: 402 RFNREETEIFIAATPFL 418
              R+  E     +P +
Sbjct: 549 SKRRQHVERLFLISPRI 565


>gi|207857100|ref|YP_002243751.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206708903|emb|CAR33233.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 497

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G       + D  +F   L+ALE+++    L++P++  ++   A         + T 
Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP +L+     +I L +  +  +     +  D +P  +  
Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  +   L +G +++L G  +      +  IPLL  IP++G LFRN              
Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485

Query: 415 TPFLV 419
              +V
Sbjct: 486 KASVV 490


>gi|268592383|ref|ZP_06126604.1| type III secretion outer membrane pore, YscC/HrcC family
           [Providencia rettgeri DSM 1131]
 gi|291312169|gb|EFE52622.1| type III secretion outer membrane pore, YscC/HrcC family
           [Providencia rettgeri DSM 1131]
          Length = 567

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 94/270 (34%), Gaps = 22/270 (8%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
           +Q      ++++N L++    QV L + I ++ R  L  +G    +   ++G        
Sbjct: 294 SQEQIRYVRQLVNTLDMR-RRQVELSLWIIDITRSELDNLGVNWEVGTFNTGTGSV---- 348

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                      F+   + +   F   + AL +      ++ P L       A F +    
Sbjct: 349 ----------SFNRSTLSNSQQFLLQIDALNKTGNGHIVSRPVLLTQENIPALFDNNTSF 398

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDM 348
             K         ++    YG ++   P + +   + + +  E             +   +
Sbjct: 399 YAKL--QGERIATLEQVTYGTMVSVMPRISAGNNVEMEVNIEDGAENRDSMGKTSSVEGL 456

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+      +T   +    ++++ G  ++   + +  IP L  +P +G LF +S  N+++ 
Sbjct: 457 PAVNRTSINTVARIAKDSSLLIGGYTREQYVENESKIPFLGDLPYVGGLFSHSSMNQQKM 516

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
                  P L+      D  +  +   + +
Sbjct: 517 VRLFLIQPRLLDENEGWDGRQFSEKTRITN 546


>gi|41019214|gb|AAR98526.1| HrcC [Pseudomonas syringae pv. phaseolicola]
          Length = 699

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 106/287 (36%), Gaps = 23/287 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+++    + +   I ++ R+ L ++  + +   SS G         GG  + +
Sbjct: 307 EKLIKELDVSRNL-IEIDAVILDIDRNELAELFNRWNFNASSVG---------GGVNLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   + +   F + LHALE   +   +  P++  +  Q A             ++S
Sbjct: 357 AGTSSTMFIQNAGKFXSELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI--TATS 414

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               ++     G  L   P  L      ++ L +  E  +  I       PS R     T
Sbjct: 415 ERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVST 474

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
              +   G++V+ G    +       IPLL  IP +G  LF++      + E     TP 
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELGQRERLFILTPR 534

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 535 LI-----GDQVNPARYVQNGNPHDVD--DQIKRIKERRDGGELPTRG 574


>gi|77918480|ref|YP_356295.1| putative secretion pathway protein [Pelobacter carbinolicus DSM
           2380]
 gi|77544563|gb|ABA88125.1| putative secretion pathway protein [Pelobacter carbinolicus DSM
           2380]
          Length = 606

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 113/334 (33%), Gaps = 44/334 (13%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTI 202
           G     Q+   A+ L+   + +      A S  + ++N +           +QV L+V I
Sbjct: 278 GEQSRQQEDDEAL-LAVLTVFKRNNCIVARSLDEGLLNEMGRIIEALDTPTNQVLLEVRI 336

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
            ++  +   +  F+    G  +          G       G  ++  + D   F   +  
Sbjct: 337 LQLNLNDGFESFFEFEYEGGDN--------TLGLLGTKALGATTLNYLFDNDRFRARIAL 388

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------------TGATSVTT 309
            E+   +  ++ P L A +     F  G +   +   +S             T    +  
Sbjct: 389 YEKEGRLEVVSTPFLMAANNSKVEFFVGEETPLRGEVTSETTTIKDTGTTLTTFTQEIEE 448

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------------MPSYRVRKA 356
            + G  +  T  + + G + L    E+S P +  +                +      + 
Sbjct: 449 EELGTDVEMTTFINADGTVTLDFDAEISSPQLAYSTVQAVNDITGEILEYPIDGTTKSEI 508

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              +   SG +I + G++++ I      +P+L  IP +G  FR     + +TE  I  TP
Sbjct: 509 KAILSARSGQSIAIGGIIRETIDDSIAKVPVLGDIPGVGFFFREVEKTKSKTETVILLTP 568

Query: 417 FLV-KPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
            ++  P     +S+  +    +   +     R N
Sbjct: 569 HVIMHPALAGQVSQ--EFLGRKSSHEQVTVGREN 600


>gi|197247911|ref|YP_002146647.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197211614|gb|ACH49011.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 497

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G       + D  +F   L+ALE+++    L++P++  ++   A         + T 
Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP +L+     +I L +  +  +     +  D +P  +  
Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  +   L +G +++L G  +      +  IPLL  IP++G LFRN              
Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485

Query: 415 TPFLV 419
              +V
Sbjct: 486 KASVV 490


>gi|167551637|ref|ZP_02345391.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168263775|ref|ZP_02685748.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168463196|ref|ZP_02697127.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|194442462|ref|YP_002040647.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|198244927|ref|YP_002215736.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|194401125|gb|ACF61347.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|195633943|gb|EDX52295.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197939443|gb|ACH76776.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205323577|gb|EDZ11416.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205347635|gb|EDZ34266.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|326623484|gb|EGE29829.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 497

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G       + D  +F   L+ALE+++    L++P++  ++   A         + T 
Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP +L+     +I L +  +  +     +  D +P  +  
Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  +   L +G +++L G  +      +  IPLL  IP++G LFRN              
Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485

Query: 415 TPFLV 419
              +V
Sbjct: 486 KASVV 490


>gi|325921916|ref|ZP_08183727.1| HrcC protein [Xanthomonas gardneri ATCC 19865]
 gi|325547618|gb|EGD18661.1| HrcC protein [Xanthomonas gardneri ATCC 19865]
          Length = 606

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 89/241 (36%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSF---AADFGGKFVSEGGDF 245
            +  TI E+R   ++ +G             TG   G    +    +       +     
Sbjct: 369 QIDATIIEIRDGAMQDLGVDWRFHSRRVDVQTGDGRGGQLGYDGSLSGAAAAGATAPLGG 428

Query: 246 SVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           ++  VL        T + ALE+    + ++ P +  +    A      Q   +   S   
Sbjct: 429 TLTAVLGDAGRYLMTRVSALEQTDKAKIVSTPQVATLDNVEAVMDHKQQAFVRV--SGYA 486

Query: 304 ATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           A  +     GV L   P+V      G++ L ++ E    +       +P     +  T  
Sbjct: 487 AADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGANTVDGIPVITSSEITTQA 545

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG  +D  Q     +P LSKIP++G LF++ + +    +     TP +V 
Sbjct: 546 FVNEGQSLLIAGYAQDTDQTDLNKVPGLSKIPLVGNLFKHRQKSGSRLQRLFLLTPHIVS 605

Query: 421 P 421
           P
Sbjct: 606 P 606


>gi|148270748|ref|YP_001245208.1| type II and III secretion system protein [Thermotoga petrophila
           RKU-1]
 gi|147736292|gb|ABQ47632.1| type II and III secretion system protein [Thermotoga petrophila
           RKU-1]
          Length = 387

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 6/225 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV + V + E+ RD   ++G        S G  + F  ++        G  +V+  +  
Sbjct: 165 PQVKISVIVTEISRDYSNELGLN--SLDYSFGSGQEFNENWTATLGLVTGILNVQTDVFG 222

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 L  LE     +  A+P +   SG+ AS   G + +   + +    + + + D G
Sbjct: 223 -QILAKLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQVV-LLEAEGAVSRIESIDVG 280

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V +   P V+    + L +  +VS            + +  +  TT+ L +G T+V++G 
Sbjct: 281 VSIEIQPRVMDKEELELTLSPKVSHFAG--EKLGTFAVKQNELSTTLFLKNGQTVVISGA 338

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             +D  Q   G+P+L+KIP++  LF  +     + E++I     +
Sbjct: 339 TIEDSAQTGSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383


>gi|304311658|ref|YP_003811256.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
 gi|301797391|emb|CBL45611.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
          Length = 598

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 95/256 (37%), Gaps = 22/256 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----------F 230
           + ++  L++     + ++ TI +V  D L++ G     +   +                 
Sbjct: 327 ENLVKNLDVPSPV-IEIEATIIDVNTDKLREQGVDWGWSNGRTSAMTGEVDAKNNFLEVL 385

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           A D         G  +   + +R  F   L+ LER   ++  + P +  ++   A   S 
Sbjct: 386 AGDAISGLAQNAGMQAGTIIGNRNRFVARLNLLEREGVVKVASRPKVVTLNDLEAVLESS 445

Query: 291 GQHLYKTVSSSTGATSVTTHDY--GVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNA 345
                       GA  V       G VL  TP V++     +I L I  E    +   + 
Sbjct: 446 RSVYVPVQ----GAYDVDLFKVFSGTVLRVTPHVINDVGTKKIRLIISAE-DGVIDEHST 500

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            + PS       T   +    +++L GL + +       +PLL  IP+LGALFR+     
Sbjct: 501 NNAPSVTRNAVSTQAVIEGETSLLLGGLSRTESITQVRKVPLLGSIPLLGALFRSEAKVV 560

Query: 406 EETEIFIAATPFLVKP 421
           + +E     TP L++ 
Sbjct: 561 QNSERLFLITPRLLED 576


>gi|168233588|ref|ZP_02658646.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168239278|ref|ZP_02664336.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194471885|ref|ZP_03077869.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194734057|ref|YP_002114408.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204927561|ref|ZP_03218762.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|194458249|gb|EDX47088.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194709559|gb|ACF88780.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288005|gb|EDY27392.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204322903|gb|EDZ08099.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205332374|gb|EDZ19138.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 497

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G       + D  +F   L+ALE+++    L++P++  ++   A         + T 
Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP +L+     +I L +  +  +     +  D +P  +  
Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  +   L +G +++L G  +      +  IPLL  IP++G LFRN              
Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485

Query: 415 TPFLV 419
              +V
Sbjct: 486 KASVV 490


>gi|56413635|ref|YP_150710.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362559|ref|YP_002142196.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127892|gb|AAV77398.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094036|emb|CAR59532.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 497

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G       + D  +F   L+ALE+++    L++P++  ++   A         + T 
Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP +L+     +I L +  +  +     +  D +P  +  
Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  +   L +G +++L G  +      +  IPLL  IP++G LFRN              
Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485

Query: 415 TPFLV 419
              +V
Sbjct: 486 KASVV 490


>gi|76663415|emb|CAE47791.1| pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 510

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 132/333 (39%), Gaps = 29/333 (8%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--------SQSGRN 174
           +   + R I +  I V  V++ ++L G   + ++S+RA  +++T+L         + G  
Sbjct: 190 IAEFIARDINNPEIEVRAVNEKIILQGWANSDEESKRAEIIAKTYLPDIVIEAAEEKGVI 249

Query: 175 QYANSSSKKVMNLLNI------AGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPS 227
           +    ++  V+NL+ I      A    + L V   E+ +D  K   FQ +   G +S  +
Sbjct: 250 KKRKPANDGVINLIQIKAAPPAAPAKMIQLVVHYVELNKDYSKAFKFQFTPELGDNSTMT 309

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                D  G  +S     S+ G +   +    L+  ++    R L   +L    G+    
Sbjct: 310 FQTGGDSPGGVIS-----SITGTVS--NLLPKLNWAKQHGHARVLESTSLIVEDGKKGEI 362

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL--SPGRIGLRIQTEVSEPVIGVNA 345
                  Y  +    G       + G+V   TP +L    G + + +  +VS  ++G   
Sbjct: 363 KQVTNQPYPVI-GKDGTQGTAFAEVGIVTSITPQLLGEKSGSVRMDMAFKVS-SLLGNTP 420

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P     +  + V +    +  + GL+++         P   K PI+ +L+ +  F +
Sbjct: 421 SGAPITSANEMSSAVTVRDRQSAAVGGLIRNSTSTGYNR-PAGQKNPII-SLYASKDFIK 478

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           ++++  +  TP +VK  A     +    + + D
Sbjct: 479 QQSQFVVFVTP-IVKTSASSGAEQIKKKFRLRD 510


>gi|16764744|ref|NP_460359.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|1498307|gb|AAC44301.1| SpiA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16419915|gb|AAL20318.1| secretion system apparatus protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|261246600|emb|CBG24410.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267993282|gb|ACY88167.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157929|emb|CBW17424.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912379|dbj|BAJ36353.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321224019|gb|EFX49082.1| Secretion system apparatus SsaC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129666|gb|ADX17096.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988281|gb|AEF07264.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 497

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G       + D  +F   L+ALE+++    L++P++  ++   A         + T 
Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP +L+     +I L +  +  +     +  D +P  +  
Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  +   L +G +++L G  +      +  IPLL  IP++G LFRN              
Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485

Query: 415 TPFLV 419
              +V
Sbjct: 486 KASVV 490


>gi|150026329|ref|YP_001297155.1| general secretion pathway protein D precursor [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772870|emb|CAL44354.1| Putative bacterial general secretion pathway protein D precursor
           [Flavobacterium psychrophilum JIP02/86]
          Length = 720

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 95/245 (38%), Gaps = 23/245 (9%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD----FGGKFVSEG-------GD 244
           + ++V + EV +    + GF   I         +   +     G + +++        G 
Sbjct: 477 ILIEVMLLEVSKSATIETGFSAGIGDKPVTTKGTVFPNSDIVLGAQTINKIINSFDGFGS 536

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            ++  V+  F+    L A+E    ++  + P L+ ++G  A  + G    Y   + +   
Sbjct: 537 LNIGSVVPNFNLS--LKAMESNGNLKIRSAPRLSTLNGHKAYLSIGETTYYVVTNQNFYG 594

Query: 305 TSV---------TTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVR 354
           + +            D  + +   P V   G+I + I+  + S     V+    P    R
Sbjct: 595 SQIPQTSEVKNYQPIDAELSVTIMPLVSGDGQITMDIKVIQSSFNGQKVDKNAPPGINSR 654

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  + + +     IVL GL +        G+P+L++IPI+  LF + +      ++ +  
Sbjct: 655 EFTSIIRVKDQDLIVLGGLEEKVKNDSGSGVPILARIPIIKWLFSSRKREDSNKKLTVLI 714

Query: 415 TPFLV 419
            P ++
Sbjct: 715 KPTVI 719


>gi|322615120|gb|EFY12043.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322619963|gb|EFY16836.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322622274|gb|EFY19119.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627796|gb|EFY24586.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322632859|gb|EFY29603.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322636650|gb|EFY33353.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322641157|gb|EFY37799.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322644908|gb|EFY41441.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322650255|gb|EFY46669.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322655829|gb|EFY52131.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322660154|gb|EFY56393.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322665279|gb|EFY61467.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669536|gb|EFY65684.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322673462|gb|EFY69564.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322677390|gb|EFY73454.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322679947|gb|EFY75986.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322687419|gb|EFY83391.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323193477|gb|EFZ78684.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323198609|gb|EFZ83710.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323208655|gb|EFZ93593.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323211192|gb|EFZ96039.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323217632|gb|EGA02347.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323218980|gb|EGA03490.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323223665|gb|EGA07975.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323229434|gb|EGA13557.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323232657|gb|EGA16753.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323240305|gb|EGA24349.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242706|gb|EGA26727.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323245918|gb|EGA29906.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252482|gb|EGA36329.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255189|gb|EGA38968.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260064|gb|EGA43689.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323267172|gb|EGA50657.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271505|gb|EGA54926.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 497

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G       + D  +F   L+ALE+++    L++P++  ++   A         + T 
Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP +L+     +I L +  +  +     +  D +P  +  
Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  +   L +G +++L G  +      +  IPLL  IP++G LFRN              
Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485

Query: 415 TPFLV 419
              +V
Sbjct: 486 KASVV 490


>gi|222100424|ref|YP_002534992.1| General secretion pathway protein D [Thermotoga neapolitana DSM
           4359]
 gi|221572814|gb|ACM23626.1| General secretion pathway protein D [Thermotoga neapolitana DSM
           4359]
          Length = 387

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 6/225 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV + V + EV +D   ++G        S G  + F  ++        G  +V+  +  
Sbjct: 165 PQVKISVIVTEVSKDYSNELGLN--SLDYSFGSGQEFNENWSATLGLVTGLINVQTDVFG 222

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 L  LE     +  A+P +   SG+ AS   G + +   + +    + + + D G
Sbjct: 223 -QILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQVV-LLQAEGAVSRIESIDVG 280

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V +   P V+    + L +  +VS            + +  +  TT+ L +G T+V++G 
Sbjct: 281 VSIDIQPRVMDKEELELTLSPKVSHFAG--EKLGTFAVKQNELSTTLFLKNGQTVVISGA 338

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             +D  Q   G+P+L+KIP++  LF  +     + E++I     +
Sbjct: 339 TIEDNAQTSSGVPILNKIPLIRYLFGGTMKKDSQKELYIFIKAEI 383


>gi|161614190|ref|YP_001588155.1| hypothetical protein SPAB_01932 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363554|gb|ABX67322.1| hypothetical protein SPAB_01932 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 497

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G       + D  +F   L+ALE+++    L++P++  ++   A         + T 
Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP +L+     +I L +  +  +     +  D +P  +  
Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  +   L +G +++L G  +      +  IPLL  IP++G LFRN              
Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485

Query: 415 TPFLV 419
              +V
Sbjct: 486 KASVV 490


>gi|16760517|ref|NP_456134.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141723|ref|NP_805065.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|168822263|ref|ZP_02834263.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|213051564|ref|ZP_03344442.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213428550|ref|ZP_03361300.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213647233|ref|ZP_03377286.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213854968|ref|ZP_03383208.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238913201|ref|ZP_04657038.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|25511812|pir||AB0700 probable outer membrane secretory protein spiA [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502813|emb|CAD01971.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137351|gb|AAO68914.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|205341330|gb|EDZ28094.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320086125|emb|CBY95899.1| Yop proteins translocation protein C Flags: Precursor [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 497

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G       + D  +F   L+ALE+++    L++P++  ++   A         + T 
Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP +L+     +I L +  +  +     +  D +P  +  
Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  +   L +G +++L G  +      +  IPLL  IP++G LFRN              
Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485

Query: 415 TPFLV 419
              +V
Sbjct: 486 KASVV 490


>gi|257092071|ref|YP_003165712.1| type II and III secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044595|gb|ACV33783.1| type II and III secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 770

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 100/265 (37%), Gaps = 37/265 (13%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------SGPSKSFAADFGGKFVSEGGDF 245
             QV L++ I EVR D   +  F     G+S        G   +   D   +     G F
Sbjct: 335 PRQVLLEMKILEVRLDNGFRSVFDIGFAGTSKSTGPLPVGVLPTTVPDQYARNAGTTGMF 394

Query: 246 SVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---- 295
            ++            S       L +   ++ L+ P L A +   A    G + +     
Sbjct: 395 DIEQDATMLWQYMSKSLSLRFQLLAQENKLKVLSSPMLVAANNHPARLFIGDERVLTVGA 454

Query: 296 --KTVSSSTGATSV------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------- 340
             ++++ +TGAT+          D G  L   P +     + L I  + S          
Sbjct: 455 SSQSITGTTGATNTQITVETERRDVGQTLSILPRINGDRSVTLTIDQDSSTVRLRDGTIP 514

Query: 341 IGVNAGDMPSYRVRKADT-----TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           I    G +  + +    T     T     G T+ + G+++D +++ +E +P+L  IP+LG
Sbjct: 515 IATGTGGVVYFPIDTVSTANLQVTAHAQDGMTVAIGGMIRDSLERDEEKVPVLGDIPVLG 574

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            LF+        ++I +  TP +++
Sbjct: 575 YLFKRDVRASIRSQIVLLITPRVLE 599


>gi|227114189|ref|ZP_03827845.1| type III secretion protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 689

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 109/320 (34%), Gaps = 33/320 (10%)

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            S  V L G + +      A+ +          ++   +  +++++ +++  ++ V +  
Sbjct: 277 ASGRVTLSGKI-SADVRNNALLI--------RDDEKRRAEYQQLVDHIDVP-QNLVNIDA 326

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            I +V R  L ++         +     +        FVS           D   F   +
Sbjct: 327 IILDVDRTALSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADI 375

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            ALE       +A P++  +  Q A             ++      +     G  L  TP
Sbjct: 376 QALEGEGTASIVANPSVLTLENQPA--IVDFSRTAFITATGERVADIQPVTAGTSLQVTP 433

Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            V+  G    I L I  E  +   G   G+    +     T   +     +VL G   ++
Sbjct: 434 RVIGEGAQRSIQLVIDIEDGQVETGRE-GEASGVKRGTVSTQALIGENRALVLGGFHVEE 492

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                  IP+L  IP+LG LF ++R      E     TP LV      D + P  + S  
Sbjct: 493 SGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSA 547

Query: 438 DDAKAF-FFNRVNKIYGPKE 456
           +  +     NRV +  G  +
Sbjct: 548 NRQQLNGAMNRVAQRNGKTD 567


>gi|197264837|ref|ZP_03164911.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197243092|gb|EDY25712.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
          Length = 497

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G       + D  +F   L+ALE+++    L++P++  ++   A         + T 
Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP +L+     +I L +  +  +     +  D +P  +  
Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  +   L +G +++L G  +      +  IPLL  IP++G LFRN              
Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485

Query: 415 TPFLV 419
              +V
Sbjct: 486 KASVV 490


>gi|62179985|ref|YP_216402.1| secretion system apparatus SsaC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|168240906|ref|ZP_02665838.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194448307|ref|YP_002045398.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|200390529|ref|ZP_03217140.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|224584095|ref|YP_002637893.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62127618|gb|AAX65321.1| Secretion system apparatus SsaC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194406611|gb|ACF66830.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|199602974|gb|EDZ01520.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205339640|gb|EDZ26404.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|224468622|gb|ACN46452.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322714452|gb|EFZ06023.1| secretion system apparatus SsaC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 497

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G       + D  +F   L+ALE+++    L++P++  ++   A         + T 
Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP +L+     +I L +  +  +     +  D +P  +  
Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  +   L +G +++L G  +      +  IPLL  IP++G LFRN              
Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485

Query: 415 TPFLV 419
              +V
Sbjct: 486 KASVV 490


>gi|15643874|ref|NP_228923.1| general secretion pathway protein D, putative [Thermotoga maritima
           MSB8]
 gi|4981663|gb|AAD36193.1|AE001770_5 general secretion pathway protein D, putative [Thermotoga maritima
           MSB8]
          Length = 387

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 6/225 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV + V + EV +D   ++G        S G  + F  ++        G   V+  +  
Sbjct: 165 PQVKISVIVTEVSKDYSNELGLN--SLDYSFGSGQEFNENWSATLGLVTGIIDVQTDVFG 222

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 L  LE     +  A+P +   SG+ AS   G + +   + +    + + + D G
Sbjct: 223 -QILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQVV-LLQAEGAVSRIESIDVG 280

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V +   P V+    + L +  +VS            + +  +  TT+ L +G T+V++G 
Sbjct: 281 VSIDIQPRVMDKEELELTLSPKVSHFAG--EKLGTFAVKQNELSTTLFLKNGQTVVISGA 338

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             +D  Q   G+P+L+KIP++  LF  +     + E++I     +
Sbjct: 339 TIEDSAQTSSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383


>gi|94987602|ref|YP_595535.1| putative type III secretion protein YscC [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731851|emb|CAJ55214.1| putative type III secretion protein YscC [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 583

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 141/383 (36%), Gaps = 46/383 (12%)

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR------ 128
           +  +V   S  TM +F      A+ I+I     Q ++  + +    + L   L       
Sbjct: 159 SIFEVSQLSNITMRVFPLKYASADDIVI-----QSMDKTVTVPGIASILRAMLNGQQETA 213

Query: 129 RFIADSNIRVEMV-SDTVVLHGMVRTIQDSQRAVELSETFLSQSGR--------NQYANS 179
             I +    V  +  + +   G  +T + ++   + +   +    R          Y   
Sbjct: 214 TTIVEQPATVNKLNGEGLASKGKEKTEKGNEVKQQAAGVNIMADPRMNAVVINDAAYRMP 273

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---- 235
             ++V++ L+   E  V +   I ++  +  + +GF  ++   SS  S +   DF     
Sbjct: 274 YYEEVIHDLDKPLEL-VEIHAAIVDIDSEFKRDLGF--TLQQGSSKKSMTMGGDFSTTQQ 330

Query: 236 --------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                   G     G  +S         F   + ALE     R L +P++  +    A+ 
Sbjct: 331 SLPLEITKGTVEGGGLTYSTIYSKGVEFFLARVQALETEGEARVLGKPSVLTVDNIQATL 390

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR----IGLRIQTEVSEPVIGV 343
            +   +  +     T    +   + G VL  TP ++        I L +  E ++     
Sbjct: 391 ENTSTYYIQVQGYQT--VDLFKVESGTVLRVTPHIIYNNDGTKSIKLVVAIEDNQNDNST 448

Query: 344 NAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           +        +P  +  + +T   + +G ++++ G   +      +GIP+L  IPI+G LF
Sbjct: 449 DPTVGSNVVLPPIKQTRINTQGVVNTGQSLLIGGYYYEQQGVNDKGIPILKDIPIIGYLF 508

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           + +    ++ E  I  TP ++ P
Sbjct: 509 KTNTKTSKKMERLILITPRIIMP 531


>gi|42521752|ref|NP_967132.1| putative pilus assembly transmembrane protein [Bdellovibrio
           bacteriovorus HD100]
 gi|39574282|emb|CAE77786.1| putative pilus assembly transmembrane protein [Bdellovibrio
           bacteriovorus HD100]
 gi|51468906|emb|CAE47779.1| pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 509

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 130/334 (38%), Gaps = 31/334 (9%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--------SQSGRN 174
           +   + R I +  I V  V++ ++L G   + ++++RA  +++T+L         + G  
Sbjct: 189 IAEFIARDINNPEIEVRAVNEKIILQGWANSDEEAKRAEIIAKTYLPDIVIEAAEEKGVI 248

Query: 175 QYANSSSKKVMNLLNI------AGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGP 226
           +    ++  V+NL+ I           + L V   E+ +D  K   FQ +  +  +S   
Sbjct: 249 KKRRPANDGVINLIQIKEAPAKPPSKMIQLVVHYVELNKDYSKAFKFQFTPELGDNSQMT 308

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
            ++     GG   S  G  S        +    L+  ++    R L   +L    G+   
Sbjct: 309 FQTGGDSPGGVISSITGTVS--------NLLPKLNWAKQHGHARVLESTSLIVEDGKKGE 360

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL--SPGRIGLRIQTEVSEPVIGVN 344
                   Y  +    G       + G+V   TP +L    G + + +  +VS  ++G  
Sbjct: 361 IKQVTNQPYPVI-GKDGTQGTAFAEVGIVTAITPVLLGEKSGSVHMEMAFKVS-SLLGNT 418

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P     +  +TV +    +  + GL+++         P   K PI+ +L+ +  F 
Sbjct: 419 PSGAPITSANEMTSTVTVRDRQSAAVGGLIRNSTSTGYNR-PAGQKNPII-SLYASKDFI 476

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           +++++  +  TP +VK  A     +    + + D
Sbjct: 477 KQQSQFVVFVTP-IVKTSASSGAEQIKKKFRLRD 509


>gi|237799995|ref|ZP_04588456.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331022850|gb|EGI02907.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 700

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 102/291 (35%), Gaps = 23/291 (7%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
               +K++  L++     + +   I ++ R+ L ++  + +    S           GG 
Sbjct: 304 KGMYQKLVKELDVPRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVS---------GGA 353

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LHALE   +   +  P++  +  Q A            
Sbjct: 354 NLFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--L 411

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S  A  +     G  L   P  L      ++ + +  E  +  +       PS R  
Sbjct: 412 TATSERAAEILPITAGTSLQVIPRSLDHDGKSQVQMIVDIEDGQIDVSTINDTQPSVRRG 471

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       +PLL  IP +G  LF++      + E    
Sbjct: 472 NVSTQAMIAEHGSLVIGGFHGLEANDRIHKVPLLGDIPYIGKLLFQSRSRELSQRERLFI 531

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            TP L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 532 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKQRRDGGELPTRG 575


>gi|284007407|emb|CBA72822.1| type III secretion outer membrane pore, YscC,HrcC,InvG
           [Arsenophonus nasoniae]
          Length = 539

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 115/308 (37%), Gaps = 21/308 (6%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
             +I+ L+  +++   D    V   +++ ++                    L   G  + 
Sbjct: 222 SNNISKLKNHIQKKNQDEL--VNQSNNSSLIENSPLNKGLVSIISNPGNNSLLIKGNKEQ 279

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
            N   +K++  L+I  +  + L V I ++ +  L Q+G + S  G+  G     + + G 
Sbjct: 280 VNYL-RKIVEQLDIT-KRHIELSVWIIDIEKKALDQLGIKWS-GGAKIGQKLGVSLNAG- 335

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                         +D  SF T + AL R      ++ P +       A F +      K
Sbjct: 336 -----------TSTIDGASFMTAIFALTRNDKANIVSRPMVLTQENIPAIFDNNRTFYTK 384

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
            +     AT +    YG  +   P      +I + I  E      G     +P       
Sbjct: 385 LIGER--ATDLKNVTYGTAISVLPRFTINNQIEMMITVE-DGSRAGQITDHLPEIGRTNI 441

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T   +P   ++++ G  +D+ + ++E IPLL  IP LG+LFR +   ++         P
Sbjct: 442 STIARVPQNKSLLIGGYTRDEHRNIEEKIPLLGDIPYLGSLFRYNIEKKDSLVRVFLIQP 501

Query: 417 F-LVKPVA 423
             ++ P++
Sbjct: 502 REIINPLS 509


>gi|289675697|ref|ZP_06496587.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae FF5]
          Length = 137

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           A P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI L++
Sbjct: 1   ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 60

Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
             EVSE      I +    +P+  +R+ DT++ L  G + V++GL+        +  P L
Sbjct: 61  APEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGL 120

Query: 389 SKIPILGALFRNSRFNR 405
             IPILGA FR+S+  R
Sbjct: 121 GDIPILGAFFRSSQIQR 137


>gi|323202935|gb|EFZ87970.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
          Length = 429

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 185 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 240

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G       + D  +F   L+ALE+++    L++P++  ++   A         + T 
Sbjct: 241 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 297

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP +L+     +I L +  +  +     +  D +P  +  
Sbjct: 298 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 357

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  +   L +G +++L G  +      +  IPLL  IP++G LFRN              
Sbjct: 358 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 417

Query: 415 TPFLV 419
              +V
Sbjct: 418 KASVV 422


>gi|171915159|ref|ZP_02930629.1| putative outer membrane protein (ComQ) [Verrucomicrobium spinosum
           DSM 4136]
          Length = 809

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 118/332 (35%), Gaps = 92/332 (27%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSFAADFG----- 235
            + ++    A   QV ++V + E+    LK++GF   +   +  G  + FA   G     
Sbjct: 463 DEYVDQAVNATPKQVEIQVRMIEINETRLKELGFDWLLGQFNVPGSDRVFAGGAGTADPN 522

Query: 236 ------GKFVSEG------------------------------GDFSVKGVLDRFSFETV 259
                 G+ V+ G                              G F+V GV     F+ V
Sbjct: 523 DPAPFPGQSVTSGLRSSGAILGVPSIDGLIGRATVPSANSKSPGFFAVSGVFTDPQFQVV 582

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---------------------- 297
           L  L+++  +  LA PT+   SGQ A+ T   +  Y T                      
Sbjct: 583 LRGLKQSKGVDILAAPTVITKSGQRANVTVAKEFRYPTEFDPPQIPQNLSANVNGVQYVA 642

Query: 298 ---VSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTE--------------VSEP 339
                + +  T+    D G+ L   P V S  R + L +                  +  
Sbjct: 643 NFAPITPSTPTAFEKRDVGITLEVEPVVGSGNRTVDLNLVPSSVEFEGFIDYGTDIQNSA 702

Query: 340 VIGVNAGDM----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +G+   D+          P +R  K  T+V +  G T+VL G+  +   ++ + +P++ 
Sbjct: 703 PVGIGGADVFFNVPNDILQPIFRTNKITTSVSVWDGNTVVLGGVTFEKRHKIDDKVPVVG 762

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            +P++G  F++   N E   +    T  ++ P
Sbjct: 763 DLPLVGRAFQSKVSNVERKNVLFFVTVRVIDP 794


>gi|149926070|ref|ZP_01914333.1| putative type III secretion protein [Limnobacter sp. MED105]
 gi|149825358|gb|EDM84569.1| putative type III secretion protein [Limnobacter sp. MED105]
          Length = 530

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 99/293 (33%), Gaps = 19/293 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQY---ANSSSKKVMNLLNIAGED--QVTLKVTI 202
            G+ +   D     E           +     A S      NL++        + ++  +
Sbjct: 215 SGVKKKADDDPEKAEFVSVTADPRTNSILIRDAKSKYDYYKNLIDQLDRQVAMIEVEAMM 274

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG--DFSVKGVLDRFSFETVL 260
            EV +  L ++G +  +       S  FA DF G  V            ++D   F   L
Sbjct: 275 VEVDQKGLNELGLEFGLL------SDRFAYDFPGSGVGRPSLIAAGATSIVDPMRFMARL 328

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            AL      + LA PT+      SA          +   S      V     G +L  TP
Sbjct: 329 KALSADENAKVLARPTIVTQDNVSAYIDLSQTLYIQV--SGERVADVIPITAGSLLQVTP 386

Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            V+      RI LRI+ +           +MP  +     T   +     I++ G  ++ 
Sbjct: 387 RVVIDEQEERIFLRIEIQDGSLTENTQGINMPRVQNTSLSTQAVIQREKAILIGGYNRES 446

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSR 429
            +     +PLL  IP +G  F ++    +        TP L+ +P+   + +R
Sbjct: 447 TEVNDYKVPLLGDIPYIGKAFTSTEKRTQTVARLFLITPRLIDRPIHDSESTR 499


>gi|319795612|ref|YP_004157252.1| type III secretion outer membrane pore, yscc/hrcc family
           [Variovorax paradoxus EPS]
 gi|315598075|gb|ADU39141.1| type III secretion outer membrane pore, YscC/HrcC family
           [Variovorax paradoxus EPS]
          Length = 613

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 130/382 (34%), Gaps = 37/382 (9%)

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           P  A+V+    R++Y  G++ G     + G       +L I   R I             
Sbjct: 226 PGVANVL----RSLY--GRHNGATGSAVSGGGRVNGSSLSIGPNRQIKLRSGESINAPKM 279

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAG 192
               V  + D     G V  I       +      +   R+  A  +  ++++  +++  
Sbjct: 280 ELSGVGSMGDGGATLGGVSGIGGELPQFQADTRMNAVLVRDTPARMAQYERLIASMDVR- 338

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPSKSFAAD 233
              + ++VTI ++  D L  +G                      +  GS +   +    +
Sbjct: 339 PRLIEIEVTIMDISSDTLSSLGVDWRLHGRHYDFQTGRGDRGPLTWDGSGNEAGQIGGVN 398

Query: 234 FGGKFVSEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             G  V+  G      + +  R      + AL        +A P +  +    A   +  
Sbjct: 399 SNGNPVTPLGAMFTAAIGNSARNYLLARVTALASNGEANFVARPKVMTLDNTEAVLENMS 458

Query: 292 QHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD 347
           +   +       G  SVT    G  +  TP ++       + + I   V   V       
Sbjct: 459 EFYVRVDGFQDAGLFSVT---AGTAVRVTPLIIDEKTGRGVMMSIDI-VDGDVSTQAVDR 514

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P  R R  +T   +  G ++++AG   ++      G+PLL  +P +G LF+ S   +  
Sbjct: 515 IPIVRRRSVNTQALVDEGASLLIAGYSSEERANAVTGVPLLKDLPGVGNLFKYSDKKQVN 574

Query: 408 TEIFIAATPFLVKPVAMRDLSR 429
            E F   TP LV P +   L  
Sbjct: 575 MERFYLLTPRLVSPGSSTALPT 596


>gi|167030895|gb|ABZ05763.1| HrcC [Pectobacterium carotovorum subsp. carotovorum]
          Length = 689

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 108/320 (33%), Gaps = 33/320 (10%)

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            S  V L G + +      A+ +          ++   +  ++++  +++  ++ V +  
Sbjct: 277 ASGRVTLSGKI-SADVRNNALLI--------RDDEKRRAEYQQLVEHIDVP-QNLVNIDA 326

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            I +V R  + ++         +     +        FVS           D   F   +
Sbjct: 327 IILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADI 375

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            ALE       +A P++  +  Q A             ++      +     G  L  TP
Sbjct: 376 QALEGEGTASIVANPSVLTLENQPA--IVDFSRTAFITATGERVADIQPVTAGTSLQVTP 433

Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            V+  G    I L I  E  +   G   G+    +     T   +     +VL G   ++
Sbjct: 434 RVIGEGTQRSIQLVIDIEDGQVETGRE-GEASGVKRGTVSTQALIGENRALVLGGFHVEE 492

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                  IP+L  IP+LG LF ++R      E     TP LV      D + P  + S  
Sbjct: 493 SGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSA 547

Query: 438 DDAKAF-FFNRVNKIYGPKE 456
           +  +     NRV +  G  +
Sbjct: 548 NRQQLNGAMNRVAQRNGKTD 567


>gi|330819413|ref|YP_004348275.1| Type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia gladioli BSR3]
 gi|327371408|gb|AEA62763.1| Type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia gladioli BSR3]
          Length = 596

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 100/266 (37%), Gaps = 33/266 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAAD- 233
           +++  L++     V ++  I E+  D L+QIG             TG++     SF    
Sbjct: 333 ELIRQLDVR-PQIVEIQAHIIEIDDDTLQQIGVDWRAHNSHVDFQTGNAQQAQNSFDGGQ 391

Query: 234 ----FGGKFVSEGGDFSVKGVLDRFSFETVL-----------HALERATAIRTLAEPTLT 278
               FG    +  G+  V       +   V+            AL+     +  A P + 
Sbjct: 392 LNPLFGTVQQAGPGNTIVNATPGGAALSAVVGGAGRYLMARVSALQSTNKTKIDASPLVA 451

Query: 279 AISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQT 334
            +    A+  +  +   K    +S    SV+T   GV L   P ++      RI L +  
Sbjct: 452 TLDNVEATMDNTTRFFVKVAGYTSADLYSVST---GVSLRVLPLIVRDQDKTRIKLNVHI 508

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           E    +      D+P     + +T   +  G ++++AG   D       G+P LS+IP+L
Sbjct: 509 E-DGQLTQQKVDDIPVITTSQINTQAFVGLGESLLIAGFTTDTQTNGVTGVPFLSRIPLL 567

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           GALFR    +    E     TP ++ 
Sbjct: 568 GALFRYHSDDHSHGERVFLLTPRIID 593


>gi|34500885|gb|AAQ73913.1| HrcC [Pectobacterium carotovorum subsp. carotovorum]
          Length = 689

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 108/320 (33%), Gaps = 33/320 (10%)

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            S  V L G + +      A+ +          ++   +  ++++  +++  ++ V +  
Sbjct: 277 ASGRVTLSGKI-SADVRNNALLI--------RDDEKRRAEYQQLVEHIDVP-QNLVNIDA 326

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            I +V R  + ++         +     +        FVS           D   F   +
Sbjct: 327 IILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADI 375

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            ALE       +A P++  +  Q A             ++      +     G  L  TP
Sbjct: 376 QALEGEGTASIVANPSVLTLENQPA--IVDFSRTAFITATGERVADIQPVTAGTSLQVTP 433

Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            V+  G    I L I  E  +   G   G+    +     T   +     +VL G   ++
Sbjct: 434 RVIGEGAQRSIQLVIDIEDGQVETGRE-GEASGVKRGTVSTQALIGENRALVLGGFHVEE 492

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                  IP+L  IP+LG LF ++R      E     TP LV      D + P  + S  
Sbjct: 493 SGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSA 547

Query: 438 DDAKAF-FFNRVNKIYGPKE 456
           +  +     NRV +  G  +
Sbjct: 548 NRQQLNGAMNRVAQRNGKTD 567


>gi|227328511|ref|ZP_03832535.1| type III secretion protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 689

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 108/320 (33%), Gaps = 33/320 (10%)

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            S  V L G + +      A+ +          ++   +  ++++  +++  ++ V +  
Sbjct: 277 ASGRVTLSGKI-SADVRNNALLI--------RDDEKRRAEYQQLVEHIDVP-QNLVNIDA 326

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            I +V R  + ++         +     +        FVS           D   F   +
Sbjct: 327 IILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADI 375

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            ALE       +A P++  +  Q A             ++      +     G  L  TP
Sbjct: 376 QALEGEGTASIVANPSVLTLENQPA--IVDFSRTAFITATGERVADIQPVTAGTSLQVTP 433

Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            V+  G    I L I  E  +   G   G+    +     T   +     +VL G   ++
Sbjct: 434 RVIGEGTQRSIQLVIDIEDGQVETGRE-GEASGVKRGTVSTQALIGENRALVLGGFHVEE 492

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                  IP+L  IP+LG LF ++R      E     TP LV      D + P  + S  
Sbjct: 493 SGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSA 547

Query: 438 DDAKAF-FFNRVNKIYGPKE 456
           +  +     NRV +  G  +
Sbjct: 548 NRQQLNGAMNRVAQRNGKTD 567


>gi|171316796|ref|ZP_02906007.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
 gi|171098054|gb|EDT42870.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
          Length = 598

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 94/240 (39%), Gaps = 10/240 (4%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           +++ L++     + ++  + EV    L+QIG          G      A FG    S G 
Sbjct: 365 LVSQLDVR-RQLIEIEAHVIEVDETALRQIGVNWGARSKHVGLQTGGGAPFGA---STGN 420

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +             ++ L+     R  A P +  +    A   +  +   +    ++G
Sbjct: 421 TLTAVVGDSGRYLMGRINLLQLENKARLDASPKVATLDNVEAIMDNRSRFFVRVSGHTSG 480

Query: 304 AT-SVTTHDYGVVLHFTPTV-LSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTV 360
              SV+T   G+ L   P V    GR  +++   + +  +      ++P        T  
Sbjct: 481 QLYSVST---GISLRVLPMVMNENGRQYIKLAVNIDDGQITNRTVDNIPIVNSSSIRTQA 537

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +    ++++AG   +   +   G+P LSKIP++GALFR S  +  + +     TP +++
Sbjct: 538 VIGKDESLLIAGYRVEGRSEGTFGVPGLSKIPVVGALFRQSESSARKMDRIFLLTPRIIE 597


>gi|300693821|ref|YP_003749794.1| type III secretion protein [Ralstonia solanacearum PSI07]
 gi|299075858|emb|CBJ35167.1| Type III secretion protein [Ralstonia solanacearum PSI07]
          Length = 590

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 90/246 (36%), Gaps = 25/246 (10%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240
           +  +I E+    L+Q+G    +  S     +G S +   +  G   S             
Sbjct: 348 ISASIIEISETALEQLGVDWRLHNSRFDLQTGNSANTMLNNPGSLDSVATTAGAAAAIAA 407

Query: 241 EGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                 +  V+   S      + AL++    R  A P +  +    A   +         
Sbjct: 408 TPAGGVLSAVIGGSSRYLMARISALQQTNQARITANPKVATLDNTEAVMDNRQNFYVPVA 467

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                +  +     GV L   P V+  G   RI + +  E    +     G++P     +
Sbjct: 468 GYQ--SADLYAISAGVSLRVLPMVVMDGGTVRIRMNVHIE-DGQITSQQVGNLPVTSQSE 524

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            DT   +  G ++++AG   D   +  + +P LSKIP++GALFR  +   +  +     T
Sbjct: 525 IDTQALINEGESLLIAGYSVDQQAKTVDAVPGLSKIPLVGALFRTDQTTGQRFQRMFLVT 584

Query: 416 PFLVKP 421
           P ++ P
Sbjct: 585 PRVITP 590


>gi|167828524|ref|ZP_02459995.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 9]
 gi|226199138|ref|ZP_03794700.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|225928913|gb|EEH24938.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 588

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 107/303 (35%), Gaps = 35/303 (11%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV------MNLLNIAGEDQVTLKVTI 202
           G  RT + S    EL          +        ++      +  L+I     + ++  I
Sbjct: 287 GAPRTEEASAERDELPIIQPDPMTNSVLIRDLPDRLAQYAPLIQQLDIR-PRLIEIQAHI 345

Query: 203 AEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-------FVSEGGDFSVKGVL 251
            E+  D+L++IG       S      G   +   D+ G          +  G+  V    
Sbjct: 346 MEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQINPFFGTTTLAGNAVVNAAP 405

Query: 252 DRFS-----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              S               + AL+  + ++  A P +  +    A   +  +   K   S
Sbjct: 406 AGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKV--S 463

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
              +  + +   GV L   P ++  G   RI + +       + G    ++P     + +
Sbjct: 464 GYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DGQLTGDQVDNLPVITSSEIN 522

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T   +  G ++++AG   D       G+P LSKIP+LGALFR    ++   E     +P 
Sbjct: 523 TQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPR 582

Query: 418 LVK 420
           ++ 
Sbjct: 583 IID 585


>gi|116620720|ref|YP_822876.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223882|gb|ABJ82591.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 527

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 117/323 (36%), Gaps = 44/323 (13%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
           +D   +   +++  A   +  +  +++V+L   V  +  ++   E               
Sbjct: 222 QDFNSVITAVQQAFAIEKVAFDTQNNSVILRDRVSKVIPARMMFEEL------------- 268

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                       +    +V +++   EV  +     G   + T S      +F       
Sbjct: 269 ------------MGPRAEVEIELRFLEVSLNDAVTYGVDLANTFSVIPLQNAF------N 310

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--- 294
           F       +   +       + + A    ++ + L    + ++  Q A+   G ++    
Sbjct: 311 FAQLAKSLTSSSLFGINILSSAIVATMSNSSGKLLLSSEVRSVDNQPATLHVGDRYPVLT 370

Query: 295 ---YKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
              Y   S + GA       S T  D G+ L  TP V     + L I +E  + + G + 
Sbjct: 371 SGYYGPQSFTNGANAYTPPPSFTFEDLGLTLKITPAVHGTESVTLDIDSEF-KVLAGGSV 429

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P    R   +  +L  G    +AGL+  D  +   GI  +S++P+LG L      N+
Sbjct: 430 NGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPVLGQLTSTHTRNK 489

Query: 406 EETEIFIAATPFLVKPVAMRDLS 428
           +E+++ I   P L+ P   + LS
Sbjct: 490 DESQVLILMRPRLLTPPPGQALS 512


>gi|330894456|gb|EGH27117.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 703

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 103/291 (35%), Gaps = 23/291 (7%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L+++    + +   I ++ R+ L ++  + +    S G         GG 
Sbjct: 307 KAMYEKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGV 356

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LH LE   +   +  P++  +  Q              
Sbjct: 357 NMFDAGTTSTMFIQNAGKFTAELHTLEGNGSASVIGNPSILTLENQPGVIDFSRTEY--L 414

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S    ++     G  L  TP  L      ++ L +  E  +  I       PS R  
Sbjct: 415 TATSERVANIEPITAGTSLQVTPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKG 474

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       +PLL  IP +G  LF++        E    
Sbjct: 475 NVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSNRERLFI 534

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            TP L+      D   P  +    +       +++ +I   ++  E+  + 
Sbjct: 535 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 578


>gi|254302334|ref|ZP_04969692.1| possible outer bacterial membrane secretin family protein
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148322526|gb|EDK87776.1| possible outer bacterial membrane secretin family protein
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 515

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 21/248 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              QV +   I ++  ++ +++GF         S    S  A   GK    G   +V  V
Sbjct: 266 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAIILGKAGLNGVGSTVNIV 325

Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
               +      T ++ LE    +   + PTL   SG+   F    + +    S       
Sbjct: 326 RQFNNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKSHRDDKKD 385

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353
             +     + G+++   P +     I L I  E+S+     N  ++              
Sbjct: 386 RYSEPVFKEAGLIMKVKPIIKDNDYIILEISLELSDFKFKRNVLNLKDINSGTYNSEGGS 445

Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E +++
Sbjct: 446 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 505

Query: 411 FIAATPFL 418
           +I     +
Sbjct: 506 YIKLKVEI 513


>gi|116074048|ref|ZP_01471310.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. RS9916]
 gi|116069353|gb|EAU75105.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. RS9916]
          Length = 670

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 8/199 (4%)

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           D  G+ V   G    +    + SF   L A  ++T+ +TLA PTL    G+SA   +G  
Sbjct: 450 DKNGRPVYVAGKDPREFSYPQNSFYGYLEAAIQSTSAKTLASPTLLVQEGESAKVETGTS 509

Query: 293 HLYKTVSSSTGATSVTTHD----YGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
            +    ++ T   S    +     G+ L      +   G + L++   VS P        
Sbjct: 510 VITGVKATETANGSTQFENTRENAGLTLGVDIEKIDDNGFVTLKVFPSVSIPQEAGFQEG 569

Query: 348 MPSYRV--RKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           +P Y +  R   +  V L    T+VL G++++   ++    P+L  +P+LG +FR +   
Sbjct: 570 VPIYNITGRSLSSGRVRLRDRQTLVLTGVIRESDIEVVRKWPILGDLPVLGQMFRKTESE 629

Query: 405 REETEIFIAATPFLVKPVA 423
           RE+ E+ I  TP +V   A
Sbjct: 630 REKQELVILVTPSIVDDEA 648


>gi|257470110|ref|ZP_05634202.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC
           49185]
          Length = 563

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 125/351 (35%), Gaps = 55/351 (15%)

Query: 105 DGKQMLNLDI-LIERDIAHLEMTLRRFIADSNIRVEMVS--DTVVLHGMVRTIQDSQRAV 161
           +G++     I L+      +   L+    +S IRV  +   + +++ G   +   + R V
Sbjct: 216 NGEEFYTERIKLVNISADEVSAILKNSFGES-IRVSSIPKMNIIIIVGKKDSTVSAVRLV 274

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +  +  +                          QV +   I +V  ++ + +GF    + 
Sbjct: 275 KELDKEI-------------------------QQVRITSQILDVTDNLFENLGFDWLYSN 309

Query: 222 SSS-----GPSKSFAADFG--GKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTL 272
           S S     G   S        G  VS G   ++    +  +      ++ L+    +   
Sbjct: 310 SGSIEKNKGLDISLIGKAAVEGAGVSFGSGINLIRQFNDGNDILGLGINLLQATQDLVIS 369

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFTPTVLSPGR 327
           A P++    G+   F    + +          T  T       + G++L   P +   G 
Sbjct: 370 AMPSILVADGEEGEFKITEEVIVGEEKKENDNTEKTTYTPLFREAGIILKVKPLIKENGI 429

Query: 328 IGLRIQTEVSE------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           I L++  EVS                G    +  S   R  +TTV++  G TI + GL +
Sbjct: 430 IFLKVMIEVSNFRLKKSEQENISSDGGTYNSEGGSKIGRSIETTVKMKDGETIFIGGLKR 489

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
             +Q L   IP L  +P++   F+N    RE T+I+I     + K    +D
Sbjct: 490 AVVQNLDSRIPFLGTLPVINIFFKNQSVKREITDIYIKLKVDIEKDSWEKD 540


>gi|12331294|emb|CAC24709.1| putative HrcS protein [Pseudomonas fluorescens]
          Length = 674

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 117/345 (33%), Gaps = 33/345 (9%)

Query: 83  SPRTMYLFGKNVG--QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI--ADSNIRV 138
              ++ L     G  ++++  +G  G    NLD     D   L+  L R +         
Sbjct: 195 DTTSLKLLSGAAGDNRSSLTGLGAAG-LPYNLD-ASGIDTGALQQGLDRVLHYGSKKPGK 252

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
                   +        ++    +L E             +  +K++  L++     + +
Sbjct: 253 GQAGGRASIRVSADVRNNAVLIYDLPER-----------KALYEKLVKQLDVPRNL-IEI 300

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
              I ++ R+ L ++  + +        S +F+   GG  + + G  S   + +   F  
Sbjct: 301 DAVILDIDRNELAELASRWNFN------SGNFS---GGANLFDAGASSTLFLQNAGKFSA 351

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            L ALE   +   +  P++  +  Q A             ++S  A ++     G  L  
Sbjct: 352 QLRALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--LTATSERAANILPITAGTSLQV 409

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P  L      +I + +  E  +  +       PS R     T   +   G++V+ G   
Sbjct: 410 IPRSLDHDGKPQIQMIVDIEDGQIDVSTINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHG 469

Query: 376 DDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
            +       IPLL  IP +G  LF++      +       TP L+
Sbjct: 470 LEANDRIHKIPLLGDIPYIGKLLFQSHNRELSQRGRLFILTPRLI 514


>gi|166363715|ref|YP_001655988.1| type IV pilus assembly protein [Microcystis aeruginosa NIES-843]
 gi|166086088|dbj|BAG00796.1| type IV pilus assembly protein [Microcystis aeruginosa NIES-843]
          Length = 701

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 18/204 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310
           F   L A  +    + L +P+L    GQ A+     + L    +     + V T      
Sbjct: 490 FLMTLQASIQTGNAKILTDPSLVVQEGQQATVKLTQKVLESVQTEVDPLSGVRTITPVLA 549

Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVI-------GVNAGDMPSYRVRKADTT--V 360
           D G+ L      V   G I L +   V+ P         G+N+G+  +  +R+  T+  V
Sbjct: 550 DAGLTLAVNVDQVDDNGFISLSVSPTVASPGTPIEFNSGGINSGNTLTPLIRRELTSGLV 609

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G +++L+G++++  Q  +  +P+L  IPILGALFR+       +E+ I  TP +++
Sbjct: 610 RLRDGQSLILSGIIQETQQSSETKVPILGDIPILGALFRSRTNQNNRSEVIILLTPKIIE 669

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFF 444
             A   L     +Y    DA    
Sbjct: 670 DTATSTL---GINYQPGQDAAEML 690


>gi|33866866|ref|NP_898425.1| general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 8102]
 gi|33639467|emb|CAE08851.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 8102]
          Length = 344

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 88/175 (50%), Gaps = 8/175 (4%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----H 310
           SF + + A+ ++++ +TLA+PTL    G++A   +G   +    ++ T   S        
Sbjct: 145 SFYSYVEAMIQSSSAKTLAQPTLLVQEGETAMVETGQSVITGVSATETANGSTQFQNTRE 204

Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT-TVELPSGG 366
           + G+ +      +   G I L ++ E+S P+         + + + RK ++ ++ L  G 
Sbjct: 205 NAGLTVDLSVSKIDDNGFISLELKPEISVPIPAGTQEGVGIFNIQARKLESGSIRLRDGQ 264

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +++L G++ D  +Q     P+L  +P++G LFR S  +RE+ E+ I  TP ++  
Sbjct: 265 SLILTGVITDSDRQQVRKWPILGDMPLIGQLFRQSSSSREKNELVIIVTPTILDD 319


>gi|183600572|ref|ZP_02962065.1| hypothetical protein PROSTU_04158 [Providencia stuartii ATCC 25827]
 gi|188019849|gb|EDU57889.1| hypothetical protein PROSTU_04158 [Providencia stuartii ATCC 25827]
          Length = 562

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 101/263 (38%), Gaps = 22/263 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++  L+     QV L + I ++ R  L  +G    +   ++G +              
Sbjct: 297 RQLVRTLDTR-RRQVELSLWIIDITRSELDNLGVNWEVGTINTGNT-------------- 341

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              F+   + +   F   + AL ++     ++ P L       A F +      K     
Sbjct: 342 AFSFNRSTLSNSTDFLLRVDALSKSGNGHIVSRPVLLTQENIPALFDNNTSFYAKL--QG 399

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKA 356
               ++    YG ++   P + S  ++ + +  E      S+     N   +PS      
Sbjct: 400 ERIATLEQVTYGTMVSVMPRISSGHQVEMEVNIEDGGEKQSKSGEVSNVEGLPSVNRTTI 459

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T   +    ++++ G  ++ + + +  IPLL  IP++G LF ++  N+++        P
Sbjct: 460 NTVARIAQNSSLLIGGYTREQVVENESHIPLLGDIPLIGGLFSHTSVNKQKMVRLFLIQP 519

Query: 417 FLVKPVAMRDLSRPDDHYSVEDD 439
            L+    + D  +  ++  +++ 
Sbjct: 520 RLLDENEVWDGRQFSENQRIKEQ 542


>gi|253688577|ref|YP_003017767.1| type III secretion outer membrane pore, YscC/HrcC family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755155|gb|ACT13231.1| type III secretion outer membrane pore, YscC/HrcC family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 689

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 109/320 (34%), Gaps = 33/320 (10%)

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            S  V L G + +      A+ +          ++   +  +++++ +++  ++ V +  
Sbjct: 277 ASSRVTLSGKI-SADVRNNALLI--------RDDEKRRAEYQQLVDHIDVP-QNLVNIDA 326

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            I +V R  L ++         +     +        FVS           D   F   +
Sbjct: 327 IILDVDRTALSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADI 375

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            ALE       +A P++  +  Q A             ++      +     G  L  TP
Sbjct: 376 QALEGEGTASIVANPSVLTLENQPA--IVDFSRTAFITATGERVADIQPVTAGTSLQVTP 433

Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            V+  G    I L I  E  +   G   G+    +     T   +     +VL G   ++
Sbjct: 434 RVVGEGAQRSIQLVIDIEDGQVETGRE-GEASGVKRGTVSTQALIGENRALVLGGFHVEE 492

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                  IP+L  IP+LG LF ++R      E     TP LV      D + P  + S  
Sbjct: 493 SGDRDRRIPILGDIPLLGKLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSA 547

Query: 438 DDAKAF-FFNRVNKIYGPKE 456
           +  +     NRV +  G  +
Sbjct: 548 NRQQLNGAMNRVAQRNGKTD 567


>gi|146298381|ref|YP_001192972.1| type II and III secretion system protein [Flavobacterium johnsoniae
           UW101]
 gi|146152799|gb|ABQ03653.1| GspD-like type II secretion system secretin protein [Flavobacterium
           johnsoniae UW101]
          Length = 634

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 113/307 (36%), Gaps = 23/307 (7%)

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
             I++E  S  +VL  + +   +     E  E     +  ++      K  +  ++    
Sbjct: 329 EVIQLENRSIELVLPSLPKVFSEKLEIKEFVELNGLVASGSKSILEELKLYIKQIDKIVP 388

Query: 194 DQVTLKVTIAEVRRDILKQI-------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
             V ++V IA+  +    Q             +TG +  P+     +      S    F+
Sbjct: 389 -MVQIEVIIAQYNKSHDVQTGMKAGLDKINKQVTGGTVFPTTDMTVN-STSVNSLIDAFN 446

Query: 247 VKGVLDRF----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             G+        +F   L  LE  + ++  + P +  ISG  A  + G    Y   S+  
Sbjct: 447 GFGIFKLGKVTEAFYLNLKLLENNSIVKVESTPKIATISGHEAKLSIGETSYYFEQSNRL 506

Query: 303 GATSV----------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
             +++           + D  + L   P V     + L I  E S  +        P   
Sbjct: 507 INSNIGNDILNSGTWKSTDANLSLSIKPYVSIDENVTLTIVVEKSSFLGRAGETAPPGKA 566

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            +K ++ V + +G  I+L GL +   +    G PLLS+IPI+   F + +  +  +++ I
Sbjct: 567 TQKFESLVRVKNGEMILLGGLDELKKEDSGSGTPLLSRIPIIKWFFSSRKKGKNNSKLHI 626

Query: 413 AATPFLV 419
              P +V
Sbjct: 627 FIKPTVV 633


>gi|161502058|ref|YP_001569170.1| hypothetical protein SARI_00075 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863405|gb|ABX20028.1| hypothetical protein SARI_00075 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 563

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 98/260 (37%), Gaps = 25/260 (9%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++  L++A +  V L + I ++ +  L+++G   S             +   G  +    
Sbjct: 294 LVKALDVA-KRHVELSLWIVDLNKSDLERLGASWS------------GSITIGDKLGVSL 340

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           + S    LD   F   ++ALE       ++ P L       A F +      K +     
Sbjct: 341 NQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNV 400

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-----IGVNAGDMPSYRVRKADT 358
           A    T  YG ++   P   + G+I + +  E          I  +   +P        T
Sbjct: 401 ALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDTTPQTEITASVDALPEVGRTLIST 458

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +P G ++++ G  +D      + IP L KIP +G LFR S  N+           FL
Sbjct: 459 IARVPHGKSLLVGGYTRDANTDTVQSIPFLGKIPFIGGLFRYSSKNKSN-----VVRVFL 513

Query: 419 VKPVAMRDLSRPDDHYSVED 438
           ++P  + D   PD   SV +
Sbjct: 514 IEPKEIVDPLTPDASESVNN 533


>gi|192384691|dbj|BAG49616.1| HrcC [Pseudomonas viridiflava]
          Length = 671

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 92/271 (33%), Gaps = 24/271 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V +   I ++ R  L  +  + S    S         +FG   ++ G         DR  
Sbjct: 300 VEIDAVILDIDRSQLSSLESRWSARAGS--------VNFGSSLLTGGSSTLFINDFDR-- 349

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + ALE       +A P++  +  Q A           T        +V     G  
Sbjct: 350 FFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERV--ANVQPVTAGTS 407

Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P  ++     R  L +  E    +      D P  +     T   +    ++V+ G
Sbjct: 408 LRVIPRTIAGEQPNRFQLIVDIE-DGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGG 466

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
              D+  + ++ +P+L  +P++GALF + R      E     TP LV      D   P  
Sbjct: 467 FHVDESGERQDKVPILGSLPVIGALFTSKRHEVSRRERLFILTPRLV-----GDQLDPSR 521

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
           + + E+  +    +R   + G     + +  
Sbjct: 522 YIARENRPQ---LDRALALSGSPSTRQQKRD 549


>gi|51103060|gb|AAT96206.1| HrcC [Pseudomonas viridiflava]
          Length = 697

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 88/246 (35%), Gaps = 20/246 (8%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L++     + +   I ++ R+ L ++  + +                GG 
Sbjct: 305 KAMYEKLIKELDVPRNL-IEIDAVILDIDRNELAELASRWNFKS-------------GGV 350

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LHALE   +   +  P++  +  Q A            
Sbjct: 351 NMFDAGTTSTLFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI-- 408

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S    ++     G  L   P  L      ++ L +  E  +  +     D PS R  
Sbjct: 409 TATSERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDVSDINADQPSVRKG 468

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       IPLL  IP +G  LF++        E    
Sbjct: 469 NVSTQAVIAEHGSLVVGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSREINHRERLFI 528

Query: 414 ATPFLV 419
            TP L+
Sbjct: 529 LTPRLI 534


>gi|51103213|gb|AAT96354.1| hrcC [Pseudomonas viridiflava]
          Length = 671

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 92/271 (33%), Gaps = 24/271 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V +   I ++ R  L  +  + S    S         +FG   ++ G         DR  
Sbjct: 300 VEIDAVILDIDRSQLSSLESRWSARAGS--------VNFGSSLLTGGSSTLFINDFDR-- 349

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + ALE       +A P++  +  Q A           T        +V     G  
Sbjct: 350 FFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERV--ANVQPVTAGTS 407

Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P  ++     R  L +  E    +      D P  +     T   +    ++V+ G
Sbjct: 408 LRVIPRTIAGEQPNRFQLIVDIE-DGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGG 466

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
              D+  + ++ +P+L  +P++GALF + R      E     TP LV      D   P  
Sbjct: 467 FHVDESGERQDKVPILGSLPVIGALFTSKRHEVSRRERLFILTPRLV-----GDQLDPSR 521

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
           + + E+  +    +R   + G     + +  
Sbjct: 522 YIARENRPQ---LDRALALSGSPSTRQQKRD 549


>gi|256846641|ref|ZP_05552097.1| general secretion pathway protein D [Fusobacterium sp. 3_1_36A2]
 gi|256717861|gb|EEU31418.1| general secretion pathway protein D [Fusobacterium sp. 3_1_36A2]
          Length = 515

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 21/248 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              QV +   I ++  ++ +++GF         S    S  A   GK    G   +V  V
Sbjct: 266 NPKQVKITSQILDISNNLFEELGFNWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIV 325

Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
               +        ++ LE    +   + PTL   SG+   F    + +    +       
Sbjct: 326 RQFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 385

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353
             +     + G+++   P +     I L I  E+S+     N  ++              
Sbjct: 386 RYSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 445

Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E +++
Sbjct: 446 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 505

Query: 411 FIAATPFL 418
           +I     +
Sbjct: 506 YIKLKVEI 513


>gi|317064333|ref|ZP_07928818.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC
           49185]
 gi|313690009|gb|EFS26844.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC
           49185]
          Length = 451

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 125/351 (35%), Gaps = 55/351 (15%)

Query: 105 DGKQMLNLDI-LIERDIAHLEMTLRRFIADSNIRVEMVS--DTVVLHGMVRTIQDSQRAV 161
           +G++     I L+      +   L+    +S IRV  +   + +++ G   +   + R V
Sbjct: 104 NGEEFYTERIKLVNISADEVSAILKNSFGES-IRVSSIPKMNIIIIVGKKDSTVSAVRLV 162

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +  +  +                          QV +   I +V  ++ + +GF    + 
Sbjct: 163 KELDKEI-------------------------QQVRITSQILDVTDNLFENLGFDWLYSN 197

Query: 222 SSS-------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTL 272
           S S         S    A   G  VS G   ++    +  +      ++ L+    +   
Sbjct: 198 SGSIEKNKGLDISLIGKAAVEGAGVSFGSGINLIRQFNDGNDILGLGINLLQATQDLVIS 257

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFTPTVLSPGR 327
           A P++    G+   F    + +          T  T       + G++L   P +   G 
Sbjct: 258 AMPSILVADGEEGEFKITEEVIVGEEKKENDNTEKTTYTPLFREAGIILKVKPLIKENGI 317

Query: 328 IGLRIQTEVSE------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           I L++  EVS                G    +  S   R  +TTV++  G TI + GL +
Sbjct: 318 IFLKVMIEVSNFRLKKSEQENISSDGGTYNSEGGSKIGRSIETTVKMKDGETIFIGGLKR 377

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
             +Q L   IP L  +P++   F+N    RE T+I+I     + K    +D
Sbjct: 378 AVVQNLDSRIPFLGTLPVINIFFKNQSVKREITDIYIKLKVDIEKDSWEKD 428


>gi|82795284|gb|ABB91653.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tagetis]
          Length = 699

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 89/246 (36%), Gaps = 16/246 (6%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L++     + +   I ++ R+ L ++  + +    +           GG 
Sbjct: 303 KAMYEKLVKELDVPRNL-IEIDAVILDIDRNELAELSSRWNFNAGNVS---------GGA 352

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LHALE   +   +  P++  +  Q A            
Sbjct: 353 SLFDAGTSSTMFIQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--L 410

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S  A  +     G  L   P  L      ++ + +  E  +  +       PS R  
Sbjct: 411 TATSERAAEILPITAGTSLQVIPRSLDHDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRG 470

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       IPLL  IP +G  LF++      + E    
Sbjct: 471 NVSTQAVIAEHGSLVVGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFI 530

Query: 414 ATPFLV 419
            TP L+
Sbjct: 531 LTPRLI 536


>gi|238918877|ref|YP_002932391.1| type III secretion outer membrane pore, YscC/HrcC family,
           [Edwardsiella ictaluri 93-146]
 gi|84663086|gb|ABC60068.1| EsaC [Edwardsiella ictaluri 93-146]
 gi|238868445|gb|ACR68156.1| type III secretion outer membrane pore, YscC/HrcC family, putative
           [Edwardsiella ictaluri 93-146]
          Length = 494

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 11/213 (5%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + + VTI +V    + Q+G   S +    G   SF  + GG+  S+     +    +  S
Sbjct: 272 IEISVTIIDVDAGDINQLGIDWSASARIGGGQVSF--NNGGRLNSDSFSSLIS---NSGS 326

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L ALE+ +  + ++ P++  +    A         + T  SS     +     G +
Sbjct: 327 FMVRLSALEQQSKAKIVSRPSVVTLDNVQAVLD--RSITFYTKLSSEKNPKLEAITSGAL 384

Query: 316 LHFTPTV---LSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLA 371
           +  TP +       ++ L +  E       ++    +P  +  +  T   L  G  ++L 
Sbjct: 385 MRVTPRLIRENGGNKVLLILNIEDGRQGAPLSQTESLPQVQNAEIATQATLNLGQALLLG 444

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           G ++++  Q    IPLL  +P++G LFR++  N
Sbjct: 445 GFVQNENTQGVRKIPLLGDLPLIGGLFRSTDRN 477


>gi|205353841|ref|YP_002227642.1| virulence associated secretory protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273622|emb|CAR38609.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628950|gb|EGE35293.1| Protein invG [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 562

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 107/301 (35%), Gaps = 30/301 (9%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTI 202
           GM       Q A   +   ++    N      + + +N + +        +  V L + I
Sbjct: 251 GMSLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVNFIEMLVKALDVAKRHVELSLWI 310

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
            ++ +  L+++G   S             +   G  +    + S    LD   F   ++A
Sbjct: 311 VDLNKSDLERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNA 358

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE       ++ P L       A F +      K +     A    T  YG ++   P  
Sbjct: 359 LEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT--YGTMIRVLPRF 416

Query: 323 LSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            + G+I + +  E             +   +P        T   +P G ++++ G  +D 
Sbjct: 417 SADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDA 476

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                + IP L K+P++G+LFR S  N+           F+++P  + D   PD   SV 
Sbjct: 477 NTDTVQSIPFLGKLPLIGSLFRYSSKNKSN-----VVRVFMIEPKEIVDPLTPDASESVN 531

Query: 438 D 438
           +
Sbjct: 532 N 532


>gi|281356803|ref|ZP_06243294.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316930|gb|EFB00953.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 850

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 101/324 (31%), Gaps = 86/324 (26%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------TGSSSGPSKSFAADF 234
            +++  L+   +  + +++   EV  + L+++GF  S+       T +S      +    
Sbjct: 507 DELIRQLDAIEKPLIMVEIKGIEVSEEDLQELGFDWSMSAIGSVKTDASGNMVSGWLFGQ 566

Query: 235 GGK--------------------------FVSEGGDFSVKGVLDRFSFETVLHALERATA 268
           GG                           F S  G+    G     +    ++AL R T 
Sbjct: 567 GGGQSNPATRTVREGITGVNTALIDGWNFFPSLFGNVHPFGSDVPLNISLTINALSRNTR 626

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKT------VSSSTGATSVT--------THDYGV 314
             TLA P +   + + AS      + +        +    G  ++T          D G+
Sbjct: 627 TETLAAPKVMTSNDRMASVRMVKSYQFPEDWDAYEIEDDDGNYTITAPVPSFGDETDIGI 686

Query: 315 VLHFTPTVLSPGR-IGLRIQTEVSE-----------------------PVIGVNAGDM-- 348
           +   TP V +    I L +   V+                        P  G   G    
Sbjct: 687 IFDVTPKVNADNYTITLEVNPTVTNYIGRDEYNIQVKGILTEYVRATDPSTGAFTGGTTL 746

Query: 349 -------------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                        P    R     V +  G TI+L G++        +  P+L  +P++G
Sbjct: 747 KQTKTTDRFNVWKPIISRRNVKVNVNVYDGETIILGGMIDATTTTRTDKWPILGDLPLVG 806

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
             F++   N     + +  T  LV
Sbjct: 807 RFFQSQSENITRNNLLLFVTTRLV 830


>gi|218988958|gb|ACL13621.1| invasion protein InvG [Salmonella enterica subsp. salamae serovar
           Sofia]
          Length = 562

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 117/327 (35%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQTDTTTSVDALPEV 450

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L KIP +G+LFR S  N+      
Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKIPFIGSLFRYSSKNKSN---- 506

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532


>gi|213425700|ref|ZP_03358450.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 505

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 117/327 (35%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  L      G V  I+   +A+++++           
Sbjct: 196 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 246

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 247 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 275

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 276 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 335

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 336 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 393

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP+L K+P++G+LFR S  N+      
Sbjct: 394 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN---- 449

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 450 -VVRVFMIEPKEIVDPLTPDASESVNN 475


>gi|32471479|ref|NP_864472.1| general secretion pathway protein D [precursor] [Rhodopirellula
            baltica SH 1]
 gi|32443320|emb|CAD72153.1| general secretion pathway protein D [Precursor] [Rhodopirellula
            baltica SH 1]
          Length = 1265

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 106/323 (32%), Gaps = 64/323 (19%)

Query: 160  AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            AV  ++T       +       +++++ L+      V +K  IAEV+ D   +IG +  +
Sbjct: 730  AVAEAQTNSVLLSVSPRIYEEVRQLIDRLDRR-PPMVLIKTLIAEVQLDDGFEIGGEFGL 788

Query: 220  TGS-------------SSGPSKSFAADFGGKFVSEGGDFSVKG----------------- 249
              S             +  P+     +FGG  V+     S                    
Sbjct: 789  QDSLLFDRGKATGAIATGNPASDPGFNFGGTSVNLPNANSFGQENLASKGITSFGAGASQ 848

Query: 250  --------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                               S    L  L  A  ++ L+ P +            G     
Sbjct: 849  LTQLSGLNSGGFVFSAASESVNLFLRTLRVANRLQILSRPEIMTADNTEGFVQVGQSFPR 908

Query: 296  KTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA- 345
             T  S TG T          +   + G++L  TP V + G I + I    S+        
Sbjct: 909  PTELSFTGGTGGTASQPIIGIEDEEIGIILRVTPRVGADGMIFMAIDASRSDINNNEGQI 968

Query: 346  ---------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                       +P+    +A  T+    G T+V  GL++   Q     +P LS IP++G 
Sbjct: 969  IGAFQDDVPIFVPAIDRTQAQATITAFDGQTVVFGGLIQKVRQNRTRRVPYLSNIPVVGT 1028

Query: 397  LFRNSRFNREETEIFIAATPFLV 419
             F+      + +E+ +  TP LV
Sbjct: 1029 FFKFDSEIEQRSELLVVMTPILV 1051


>gi|34498087|ref|NP_902302.1| invasion protein - outer membrane [Chromobacterium violaceum ATCC
           12472]
 gi|34103942|gb|AAQ60302.1| invasion protein - outer membrane [Chromobacterium violaceum ATCC
           12472]
          Length = 561

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 63/337 (18%), Positives = 119/337 (35%), Gaps = 62/337 (18%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L   L+R  A  +I+V    DT  +++ G    VR I++  RA+++++           
Sbjct: 253 SLPEALKRDAAAGDIKVIAYPDTNSLLVKGTAEQVRFIENLARALDVAKRH--------- 303

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++++D L Q+G   S              +  G
Sbjct: 304 -------------------VELSLWIIDLQKDDLDQLGVNWS--------GSVTVGNKLG 336

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +++ G  S    LD   F   + A+        ++ P +       A F +      K
Sbjct: 337 VTLNQAGSLS---TLDGTRFLAAVMAMTSKKKANVVSRPVVLTQENIPAIFDNNRTFYAK 393

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPS 350
                  +  +    YG ++   P   + G+I + +  E                  +P 
Sbjct: 394 L--EGERSVDLQHVTYGTLISVLPRFAADGQIEMSLSIEDGSQARAPDYSSDNKDAGLPE 451

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
               +  T   +P G ++++ G  +D  ++ +  +PLL  +P++G LFR     +  T  
Sbjct: 452 VGRTRISTVARVPQGKSLLIGGFTRDASERGEGKVPLLGDLPLVGGLFRYQSAKQTNT-- 509

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
                 FL++P  + D   PD       D  A    R
Sbjct: 510 ---VRVFLIQPREIDDALTPD-----ASDLSADLVRR 538


>gi|51103005|gb|AAT96152.1| HrcC [Pseudomonas viridiflava]
          Length = 697

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 88/246 (35%), Gaps = 20/246 (8%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L++     + +   I ++ R+ L ++  + +                GG 
Sbjct: 305 KAMYEKLIKELDVPRNL-IEIDAVILDIDRNELAELASRWNFKS-------------GGV 350

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + + G  S   + +   F   LHALE   +   +  P++  +  Q A            
Sbjct: 351 NMFDAGTTSTLFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI-- 408

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            ++S    ++     G  L   P  L      ++ L +  E  +  +     D PS R  
Sbjct: 409 TATSERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDVSDINADQPSVRKG 468

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       IPLL  IP +G  LF++        E    
Sbjct: 469 NVSTQAVIAEHGSLVVGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSREINHRERLFI 528

Query: 414 ATPFLV 419
            TP L+
Sbjct: 529 LTPRLI 534


>gi|296328369|ref|ZP_06870896.1| general secretion pathway protein D [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154548|gb|EFG95338.1| general secretion pathway protein D [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 515

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 93/248 (37%), Gaps = 21/248 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              QV +   I ++  ++ +++GF         S    S  A   GK    G   +V  V
Sbjct: 266 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIV 325

Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
               +      T ++ LE    +   + PTL   SG+   F    + +    +       
Sbjct: 326 RQFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 385

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353
             +     + G+++   P +     I L I  E+S+     N  ++              
Sbjct: 386 RYSEPVFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 445

Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E +++
Sbjct: 446 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 505

Query: 411 FIAATPFL 418
           +I     +
Sbjct: 506 YIKLKVEI 513


>gi|16761675|ref|NP_457292.1| virulence associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143159|ref|NP_806501.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213052440|ref|ZP_03345318.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213612699|ref|ZP_03370525.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|25512784|pir||AF0852 secretory protein (associated with virulence) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503976|emb|CAD06005.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138792|gb|AAO70361.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 562

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 117/327 (35%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  L      G V  I+   +A+++++           
Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 303

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP+L K+P++G+LFR S  N+      
Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN---- 506

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532


>gi|332711134|ref|ZP_08431068.1| type II secretory pathway, component HofQ [Lyngbya majuscula 3L]
 gi|332350116|gb|EGJ29722.1| type II secretory pathway, component HofQ [Lyngbya majuscula 3L]
          Length = 810

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 16/219 (7%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTA 279
           G ++ P +    D   +      +FS+  + +    F   L A   ++  + L +PTL  
Sbjct: 563 GRNNNPFQPGVTDVQRQDDGNEFEFSLPSLFEYPDKFLLTLQAQITSSNAKILTDPTLVI 622

Query: 280 ISGQSASFTSGGQHLYKTVSS-------STGATSVTTHDYGVVLHF-TPTVLSPGRIGLR 331
             GQ AS     + L    +        +T   +    + G+ L      +   G I L 
Sbjct: 623 QEGQEASVKLVQEVLTSVTTDIDLDGGVATRTITPVIEEAGLTLTVNVDRIDDNGFITLS 682

Query: 332 IQTEVSEPVIGV-----NAGDMPSYRVRKADTT--VELPSGGTIVLAGLLKDDIQQLKEG 384
               ++ P         NA +  ++  R+  ++  V L  G T++L+G+++D  +     
Sbjct: 683 TSPVITAPSGTQEFNSDNAQNEITFLSRRELSSGLVRLRDGQTLILSGIIQDTDRTTVSK 742

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +P+L  IP+LGALFR++    + +E+ I  TP ++    
Sbjct: 743 VPILGDIPLLGALFRSTNKQNQRSEVIILVTPQIMDDTD 781


>gi|167573369|ref|ZP_02366243.1| type II/III secretion system protein [Burkholderia oklahomensis
           C6786]
          Length = 607

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 33/241 (13%)

Query: 210 LKQIGFQH-------------SITGSSSGPSKSFAADFGGKFVSEGGD----------FS 246
           LKQ+G                 +T  +S  + S    FG   +S  GD           S
Sbjct: 371 LKQLGVDWRAHNSHIDLQTGTGLTAQNSYANGSLNPTFGSISLSGNGDSVGVPASPLGLS 430

Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTG 303
           +  VL          ++ALE +   RT A P +T +    A   +  Q   +    +S  
Sbjct: 431 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 490

Query: 304 ATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             S++T   GV L   P V+  G   +I L ++  V   +      ++P     + +T  
Sbjct: 491 LYSIST---GVSLRVLPMVVEEGGHTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQA 546

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G  +++AG   D       G+P+LSK+P++GALFR++      TE     TP +++
Sbjct: 547 FIEQGQALLIAGYKVDSRSSTLSGVPVLSKLPLVGALFRSTDKQDSHTERLFLVTPRVIE 606

Query: 421 P 421
           P
Sbjct: 607 P 607


>gi|161520290|ref|YP_001583717.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia multivorans ATCC 17616]
 gi|189353532|ref|YP_001949159.1| putative type II secretory pathway [Burkholderia multivorans ATCC
           17616]
 gi|160344340|gb|ABX17425.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans ATCC 17616]
 gi|189337554|dbj|BAG46623.1| putative type II secretory pathway [Burkholderia multivorans ATCC
           17616]
          Length = 678

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 107/314 (34%), Gaps = 47/314 (14%)

Query: 196 VTLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPSKSFAADFGG 236
           V + VTI ++  D L  +G                        T  +   +       G 
Sbjct: 337 VEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTFGIGA 396

Query: 237 KFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAEPTLTAISGQSASFT 288
               + G F   G+    S    L        +AL +    +  ++P + A+    A   
Sbjct: 397 SESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTEAILE 456

Query: 289 SGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTE 335
           +  Q   +       +  SVTT   G  +  TP ++                + + I  +
Sbjct: 457 NLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDDAIRNAAAVSGRPESVMMSIDIQ 513

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
               V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP++G
Sbjct: 514 DGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIG 573

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDDAKAFFFNR--VNKI 451
            LF+ +  +    E F   TP +V   +M   D S  +       D       R   N I
Sbjct: 574 NLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPDNDI 633

Query: 452 YGPKEASEVEGQNY 465
             P     + G  +
Sbjct: 634 AVPLTPRPLPGTKF 647


>gi|76574829|gb|ABA47303.1| HrcC [Pseudomonas cichorii]
          Length = 672

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 85/227 (37%), Gaps = 16/227 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V +   I ++ R  L  +  + S    S         +FG   ++ G   +   + D   
Sbjct: 301 VEIDAIILDIDRTQLSALESRWSARAGS--------VNFGSSLLTGGS--ATLSINDFDR 350

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + ALE       +A P++  +  Q A      +  Y T +    A  V +   G  
Sbjct: 351 FFADIQALEGQGVASVIARPSVLTLENQPAVIDF-SRTAYITATGERVAN-VQSVTAGTS 408

Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P  ++     R  L I  E  +     + G+ P  +     T   +    ++V+ G
Sbjct: 409 LQVIPRTIAGAQPSRFQLIIDIEDGQLDRSRD-GETPDVKRGTVSTQAVISENRSLVIGG 467

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              D+  Q  + +PLL  +P+LG+LF + R      E     TP L+
Sbjct: 468 FHVDETGQHHDKVPLLGDLPVLGSLFTSKRQEVSRRERLFILTPRLI 514


>gi|221200554|ref|ZP_03573596.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD2M]
 gi|221206234|ref|ZP_03579248.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD2]
 gi|221174246|gb|EEE06679.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD2]
 gi|221179895|gb|EEE12300.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD2M]
          Length = 678

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 107/314 (34%), Gaps = 47/314 (14%)

Query: 196 VTLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPSKSFAADFGG 236
           V + VTI ++  D L  +G                        T  +   +       G 
Sbjct: 337 VEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTFGIGA 396

Query: 237 KFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAEPTLTAISGQSASFT 288
               + G F   G+    S    L        +AL +    +  ++P + A+    A   
Sbjct: 397 SESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTEAILE 456

Query: 289 SGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTE 335
           +  Q   +       +  SVTT   G  +  TP ++                + + I  +
Sbjct: 457 NLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDDAIRNAAAVSGRPESVMMSIDIQ 513

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
               V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP++G
Sbjct: 514 DGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIG 573

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDDAKAFFFNR--VNKI 451
            LF+ +  +    E F   TP +V   +M   D S  +       D       R   N I
Sbjct: 574 NLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPDNDI 633

Query: 452 YGPKEASEVEGQNY 465
             P     + G  +
Sbjct: 634 AVPLTPRPLPGTKF 647


>gi|221209590|ref|ZP_03582571.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD1]
 gi|221170278|gb|EEE02744.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD1]
          Length = 678

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 107/314 (34%), Gaps = 47/314 (14%)

Query: 196 VTLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPSKSFAADFGG 236
           V + VTI ++  D L  +G                        T  +   +       G 
Sbjct: 337 VEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTFGIGA 396

Query: 237 KFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAEPTLTAISGQSASFT 288
               + G F   G+    S    L        +AL +    +  ++P + A+    A   
Sbjct: 397 SESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTEAILE 456

Query: 289 SGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTE 335
           +  Q   +       +  SVTT   G  +  TP ++                + + I  +
Sbjct: 457 NLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDDAIRNAAAVSGRPESVMMSIDIQ 513

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
               V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP++G
Sbjct: 514 DGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIG 573

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDDAKAFFFNR--VNKI 451
            LF+ +  +    E F   TP +V   +M   D S  +       D       R   N I
Sbjct: 574 NLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPDNDI 633

Query: 452 YGPKEASEVEGQNY 465
             P     + G  +
Sbjct: 634 AVPLTPRPLPGTKF 647


>gi|269138220|ref|YP_003294920.1| Type II secretory pathway, component PulD like protein
           [Edwardsiella tarda EIB202]
 gi|55981981|gb|AAV69411.1| EsaC [Edwardsiella tarda]
 gi|61743031|gb|AAX55251.1| EsaC [Edwardsiella tarda]
 gi|267983880|gb|ACY83709.1| Type II secretory pathway, component PulD like protein
           [Edwardsiella tarda EIB202]
 gi|304558263|gb|ADM40927.1| EsaC [Edwardsiella tarda FL6-60]
          Length = 494

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 85/213 (39%), Gaps = 11/213 (5%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + + VTI +V    + ++G   S +    G   SF    G        D     + +  S
Sbjct: 272 IEISVTIIDVDAGDINELGIDWSASARIGGGQVSFNNSGGLN-----ADSFSSLIANSGS 326

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L ALE+ +  + ++ P++  +    A         + T   S     +     G +
Sbjct: 327 FMVRLSALEQQSKAKIVSRPSVVTLDNVQAVLD--RSITFYTKLRSEKNPKLEAITAGAL 384

Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLA 371
           +  TP ++      +I L +  E       ++ A  +P  +  +  T   L  G  ++L 
Sbjct: 385 MRVTPRLIRERGGNKILLILNIEDGRQGAPLSQAESLPQVQNAEIATQATLNLGQALLLG 444

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           G ++++  Q    IPLL  IP++G LFR++   
Sbjct: 445 GFVQNENTQGVRKIPLLGDIPLIGGLFRSTDSK 477


>gi|159028225|emb|CAO88035.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 518

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 19/205 (9%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------STGATSVT 308
           F   L A  +    + L +P+L    GQ A      + L    ++       +   T+  
Sbjct: 306 FLMTLQASIQTGNAKILTDPSLVVQEGQQAVVKLTEKVLVSVETTIDTNSNGNVRTTTPV 365

Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADT-T 359
             D G+ L      +   G I L +   +++P         G     +     R+  +  
Sbjct: 366 FGDAGLTLTVDVNQIDDNGYISLNVAPTIAQPGPQIPFNSGGATINQLTPLITRELLSGL 425

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G +++L+G++++  Q  +  +P+L  IPILGALFR+       +E+ I  TP ++
Sbjct: 426 IRLRDGQSLILSGIIQERQQSSETKVPILGDIPILGALFRSRTNQNSRSEVIILLTPKII 485

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFF 444
           +  A   L     +Y    DA    
Sbjct: 486 EDSATSTL---GINYQPGQDAAEVL 507


>gi|289804655|ref|ZP_06535284.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 465

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 117/327 (35%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  L      G V  I+   +A+++++           
Sbjct: 156 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 206

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 207 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 235

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 236 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 295

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 296 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 353

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP+L K+P++G+LFR S  N+      
Sbjct: 354 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN---- 409

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 410 -VVRVFMIEPKEIVDPLTPDASESVNN 435


>gi|171909982|ref|ZP_02925452.1| general secretion pathway protein D [Verrucomicrobium spinosum DSM
           4136]
          Length = 632

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 93/261 (35%), Gaps = 25/261 (9%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
              ++  S+ F         +         V D    + ++HALE+   +   + PT+  
Sbjct: 312 NYDNASTSEGFKTTASSSEHNSLYQDGPGLVFDAMQVQAIVHALEQNGIVSQESCPTIIT 371

Query: 280 ISGQSASFTSGGQHLYKT--VSSSTGATSVT--------------------THDYGVVLH 317
              +    +   +    T  VS +    ++T                    + + GV L 
Sbjct: 372 EDNEQGIISIVDRFPIVTTNVSQTDAGQTITDEVRYKVDKDDPDAMEEPDKSREIGVTLT 431

Query: 318 FTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            TPT+L  G + ++++  V++ V    G N    P      AD    +P+G +++L G  
Sbjct: 432 VTPTMLPDGTVRMKLRPRVAKIVELVQGNNGNVYPRVSESTADAISRIPAGQSLILGGFY 491

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
                  K  +P+L  +P+L  LFR      E+  +    TP      ++  + R ++  
Sbjct: 492 DYSSSNNKNKVPVLGNVPVLKHLFRYKEKTMEKVSLVFIITPSAYDAGSVPSIQRVNEEV 551

Query: 435 SVEDDAKAFFFNRVNKIYGPK 455
                 +      +++   P 
Sbjct: 552 RAYSGMERPQLEEMSRRLEPS 572


>gi|257142080|ref|ZP_05590342.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 598

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 13/226 (5%)

Query: 205 VRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETV 259
           V       +  Q+S    +  P   S S A +      +     S+  VL          
Sbjct: 377 VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 436

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 437 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 493

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P V+  G   +I L ++  V   +      ++P     + +T   +  G  +++AG   
Sbjct: 494 LPMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKV 552

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           D     + G+P+LSK+P+LGALFR++      +E     TP +++P
Sbjct: 553 DARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 598


>gi|83717709|ref|YP_438974.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|83651534|gb|ABC35598.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 605

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 13/226 (5%)

Query: 205 VRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETV 259
           V       +  Q+S    +  P   S S A +      +     S+  VL          
Sbjct: 384 VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 443

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 444 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 500

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P V+  G   +I L ++  V   +      ++P     + +T   +  G  +++AG   
Sbjct: 501 LPMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKV 559

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           D     + G+P+LSK+P+LGALFR++      +E     TP +++P
Sbjct: 560 DARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 605


>gi|284007665|emb|CBA73372.1| Type III secretion outermembrane pore forming protein
           YscC,MxiD,HrcC,InvG [Arsenophonus nasoniae]
          Length = 554

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 90/263 (34%), Gaps = 22/263 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            +++  L+   + QV L + I ++ +    ++G     +  S            G F+  
Sbjct: 289 NEMIQRLDQP-KRQVELSLWIIDIAKHEADRLGIDWQSSYHSKD----------GNFLLN 337

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             D S         F   + A+    +   ++ P +       A F +      +     
Sbjct: 338 TSDISAAA---GIHFLAKIRAMSMEGSAHMVSRPIILTQENTPAIFDNSTTFYAQVRGER 394

Query: 302 TGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRK 355
               ++ +  +G ++   P +      I + I  E      +          +P      
Sbjct: 395 I--ATLESATFGTMISVVPRLSPTGDEIEMVINLEDGAEKKTNSGETEKIDALPVINRTN 452

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T   +  G ++++ G  ++DI   +  IPLL  IP +G LFR S    ++        
Sbjct: 453 ISTVARVAQGDSLLIGGYTREDIDSSESKIPLLGDIPWIGGLFRFSSTTNKKMVRIFMLQ 512

Query: 416 PFLVKPVAMRDLSRPDDHYSVED 438
           P LVK   + + S   + +   D
Sbjct: 513 PRLVKGKNLLNDSLGKNPFKPVD 535


>gi|16766204|ref|NP_461819.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|207858160|ref|YP_002244811.1| secretory protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|20141547|sp|P35672|INVG_SALTY RecName: Full=Protein invG; Flags: Precursor
 gi|16421446|gb|AAL21778.1| outer membrane invasion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|206709963|emb|CAR34317.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261248034|emb|CBG25867.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995026|gb|ACY89911.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159457|emb|CBW18975.1| type III secretion system secretory apparatus [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312913916|dbj|BAJ37890.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|323131250|gb|ADX18680.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326624629|gb|EGE30974.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332989770|gb|AEF08753.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 562

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 506

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532


>gi|182440996|dbj|BAG24121.1| HrcC [Pseudomonas cichorii]
          Length = 672

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 84/227 (37%), Gaps = 16/227 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V +   I ++ R  L  +  + S    S         +FG   ++ G   +   + D   
Sbjct: 301 VEIDAIILDIDRTQLSALESRWSARAGS--------VNFGSSLLTGGS--ATLSISDFDR 350

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + ALE       +A P++  +  Q A      +  Y T +    A  V +   G  
Sbjct: 351 FFADIQALEGQGGASVIARPSVLTLENQPAVIDF-SRTAYITATGERVAN-VQSVTAGTS 408

Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P  ++     R  L I  E  +     + G+ P  +     T   +    ++V+ G
Sbjct: 409 LQVIPRTIAGAQANRFQLIIDIEDGQLDRSRD-GETPDVKRGTVSTQAVISENRSLVIGG 467

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              D+  Q  + +PLL  +P+LG LF + R      E     TP L+
Sbjct: 468 FHVDETGQHHDKVPLLGDLPVLGPLFTSKRQEVSRRERLFILTPRLI 514


>gi|255531011|ref|YP_003091383.1| type II and III secretion system protein [Pedobacter heparinus DSM
           2366]
 gi|255343995|gb|ACU03321.1| type II and III secretion system protein [Pedobacter heparinus DSM
           2366]
          Length = 655

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 102/244 (41%), Gaps = 18/244 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFGGKFVSEGGDF 245
             V ++VT+ ++R+    + G +  +  S         SG   +  A      + + G  
Sbjct: 410 PMVLIEVTLLDIRKGHTTKTGIEAGLADSVVRTRGTVLSGVDMTLGAGSINNLLGKIGSN 469

Query: 246 SVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----S 300
           SV  +     +F   L+ALE    I     P L  ++G +A+ + G    Y T +    S
Sbjct: 470 SVFNIGKVTPNFYVKLNALEANNNIEIRQVPKLATLNGHTANLSIGTTRYYVTKTQNVFS 529

Query: 301 STGATSVTTH-----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           S    +V T      D  + +  +P V    ++ L+I+ E+S+ +    A   P     K
Sbjct: 530 SVNTQTVFTEQFNKVDANLAIGISPVVSGDDQVTLKIKVEISDFIGTPPANAPPPTSTSK 589

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            ++ +   +   IVL G+ + +      G+PLLS+IP+L  +F +    + +    +   
Sbjct: 590 FESIIRAHNEDMIVLGGMERSEKSDSGSGVPLLSRIPVLKWIFSSREQTKSKVVTLVFIK 649

Query: 416 PFLV 419
           P ++
Sbjct: 650 PTII 653


>gi|91203965|emb|CAJ71618.1| hypothetical protein kustc0873 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 844

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/306 (20%), Positives = 112/306 (36%), Gaps = 36/306 (11%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSS-----SKKVMNLLNIAGEDQVTLKVTI 202
            G+ R+I+ S +        + Q G     N++      + V+  L  +   QV ++   
Sbjct: 514 TGVQRSIRTSGQGEGSITARMGQPGDLVVVNTTFIHKQIEDVLASLRTSQNLQVNIEARF 573

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
             V  + L+ IG   +   S +    + AAD  G  +  G D +   +    + +  L A
Sbjct: 574 ITVTDEFLEDIGTDITRFFSDNTSVSTGAADIAGD-LGSGIDLNFA-IFGNSALKGFLKA 631

Query: 263 LERATAIRTLAEPTLT---AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           ++ +     L  P +T      G  A   +       TV        + T   G      
Sbjct: 632 VQESKGSEVLTSPRITLSNTQRGNIAVLQTRNYIQSTTVEDGIVTPVIGTVPEGTTFDVR 691

Query: 320 PTVLSPGR-IGLRIQTEV-----------SEPVIGVNAGD--------------MPSYRV 353
           P V +  + + L +   V           S    GV+ G               +P   V
Sbjct: 692 PIVSADRKFVYLEVTPSVFAIEEIESFTFSGLSEGVSVGGGDGTTYIPPEQTIQLPKLNV 751

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            +   TV +P  GT+++ GL     +    G+P+LSKIPI+  LF   +  R ++ + I 
Sbjct: 752 SQVSVTVYVPDKGTLMIGGLGSLSNKDETSGVPVLSKIPIIKRLFTRDQKTRNKSNLIIL 811

Query: 414 ATPFLV 419
             P ++
Sbjct: 812 LKPTII 817


>gi|56414850|ref|YP_151925.1| virulence secretory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363778|ref|YP_002143415.1| virulence secretory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129107|gb|AAV78613.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095255|emb|CAR60806.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 562

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 506

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532


>gi|213865044|ref|ZP_03387163.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 501

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 117/327 (35%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  L      G V  I+   +A+++++           
Sbjct: 192 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 242

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 243 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 271

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 272 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 331

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 332 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 389

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP+L K+P++G+LFR S  N+      
Sbjct: 390 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN---- 445

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 446 -VVRVFMIEPKEIVDPLTPDASESVNN 471


>gi|238909665|ref|ZP_04653502.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 562

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 506

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532


>gi|474942|emb|CAA53049.1| invG [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 562

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 119/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S T +             G
Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWSGTITI------------G 332

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 506

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532


>gi|320087303|emb|CBY97068.1| Protein invG Flags: Precursor [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 562

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 506

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532


>gi|161615810|ref|YP_001589775.1| hypothetical protein SPAB_03601 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161365174|gb|ABX68942.1| hypothetical protein SPAB_03601 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 553

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 244 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 294

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 295 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 323

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 324 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 383

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 384 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 441

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 442 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 497

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 498 -VVRVFMIEPKEIVDPLTPDASESVNN 523


>gi|62181400|ref|YP_217817.1| invasion protein; outer membrane [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62129033|gb|AAX66736.1| invasion protein; outer membrane [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322715884|gb|EFZ07455.1| invasion protein; outer membrane [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 562

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 506

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532


>gi|195873613|ref|ZP_02697884.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195633590|gb|EDX52004.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 514

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 205 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 255

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 256 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 284

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 285 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 344

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 345 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 402

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 403 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 458

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 459 -VVRVFMIEPKEIVDPLTPDASESVNN 484


>gi|299069241|emb|CBJ40501.1| Type III secretion protein [Ralstonia solanacearum CMR15]
          Length = 590

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 25/246 (10%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240
           +  +I ++  + L+Q+G    +  S     +G   +   +  G   S             
Sbjct: 348 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 407

Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              GG  S             + AL++    R  A P +  +    A   +         
Sbjct: 408 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 467

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                +  +     GV L   P V+  G   RI + +  E    +     G++P     +
Sbjct: 468 GYQ--SADLYAISAGVSLRVLPMVVMDGGTVRIRMNVHIE-DGQITSQQVGNLPITSQSE 524

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            DT   +  G ++++AG   +   +  + +P LSKIP++GALFR  +   +  +     T
Sbjct: 525 IDTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVT 584

Query: 416 PFLVKP 421
           P ++ P
Sbjct: 585 PRVITP 590


>gi|194292010|ref|YP_002007917.1| sctc: non flagellar t3S system conserved protein. gsp d family
           [Cupriavidus taiwanensis LMG 19424]
 gi|193225914|emb|CAQ71861.1| SctC: non flagellar T3S system conserved protein. GSP D family
           [Cupriavidus taiwanensis LMG 19424]
          Length = 580

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 96/259 (37%), Gaps = 24/259 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------TGSSSGPSKS 229
           ++++  L++     V ++VTI ++ +  L  +G    +             G++     +
Sbjct: 324 RRLIESLDVK-PRLVEIEVTIMDISQADLDSLGVDWRLHTPHVDLQLGGGNGNAGLSFGN 382

Query: 230 FAADFGGKFVSEGGDFSVKGVLDR---FSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
            A + G    + G      G +         T + AL        +A P +  +    A+
Sbjct: 383 LANEAGTTAATIGSGLQFTGAIGSDVTRYLLTRVKALAERGQANFVARPKVLTLDNTEAA 442

Query: 287 FTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIG 342
             +  +   +       G  +VT    G  +  TP V+       + L I       + G
Sbjct: 443 LENLQEFYVRVDGFQDAGLFNVT---AGTAVRVTPLVVDEQQNRAVMLTIDIA-DGNLSG 498

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                +P  R R   T   +  G ++++AG   ++      G+PLL  +PI+G LF+   
Sbjct: 499 ETVDRIPVVRRRSITTQAMVEEGKSLLIAGYTTEEKINASSGVPLLQDVPIIGNLFKYQE 558

Query: 403 FNREETEIFIAATPFLVKP 421
             +   E F   TP LV P
Sbjct: 559 KRQNNMERFYLLTPRLVIP 577


>gi|205357926|ref|ZP_02574228.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205328766|gb|EDZ15530.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
          Length = 556

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 247 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 297

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 298 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 326

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 327 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 386

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 387 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 444

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 445 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 500

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 501 -VVRVFMIEPKEIVDPLTPDASESVNN 526


>gi|19705376|ref|NP_602871.1| general secretion pathway protein D [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713363|gb|AAL94170.1| General secretion pathway protein D [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 402

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 93/248 (37%), Gaps = 21/248 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              QV +   I ++  ++ +++GF         S    S  A   GK    G   +V  V
Sbjct: 153 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIV 212

Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
               +      T ++ LE    +   + PTL   SG+   F    + +    +       
Sbjct: 213 RQFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 272

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353
             +     + G+++   P +     I L I  E+S+     N  ++              
Sbjct: 273 RYSEPVFKEAGLIMKVKPIIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 332

Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E +++
Sbjct: 333 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 392

Query: 411 FIAATPFL 418
           +I     +
Sbjct: 393 YIKLKVEI 400


>gi|194445131|ref|YP_002042139.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194470942|ref|ZP_03076926.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197248412|ref|YP_002147795.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|198243599|ref|YP_002216867.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205356993|ref|ZP_02344010.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205358415|ref|ZP_02656026.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194403794|gb|ACF64016.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194457306|gb|EDX46145.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197212115|gb|ACH49512.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197938115|gb|ACH75448.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205324767|gb|EDZ12606.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205334513|gb|EDZ21277.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|321223445|gb|EFX48511.1| Protein InvG precursor [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 514

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 205 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 255

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 256 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 284

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 285 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 344

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 345 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 402

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 403 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 458

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 459 -VVRVFMIEPKEIVDPLTPDASESVNN 484


>gi|205359783|ref|ZP_02832405.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205342787|gb|EDZ29551.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 556

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 247 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 297

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 298 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 326

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 327 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 386

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 387 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 444

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 445 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 500

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 501 -VVRVFMIEPKEIVDPLTPDASESVNN 526


>gi|21230696|ref|NP_636613.1| HrcC protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769309|ref|YP_244071.1| HrcC protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|188992461|ref|YP_001904471.1| HrcC protein [Xanthomonas campestris pv. campestris str. B100]
 gi|21112285|gb|AAM40537.1| HrcC protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574641|gb|AAY50051.1| HrcC protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734221|emb|CAP52429.1| HrcC protein [Xanthomonas campestris pv. campestris]
          Length = 605

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 88/241 (36%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSF---AADFGGKFVSEGGDF 245
            +  TI E+R   L+ +G             TG   G    +    +       +     
Sbjct: 368 QIDATIIEIRDGALQDLGVDWRFHSRRVDVQTGDGRGGQLGYDGSLSGAAAAGAAAPLGG 427

Query: 246 SVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           ++  VL        T + ALE+    + ++ P +  +    A      Q   +   S   
Sbjct: 428 TLTAVLGDAGRYLMTRVSALEQTNKAKIVSTPQVATLDNVEAVMDHKQQAFVRV--SGYA 485

Query: 304 ATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           +  +     GV L   P+V      G++ L ++ E    +       +P     +  T  
Sbjct: 486 SADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGANTVDGIPVITSSEITTQA 544

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  Q     +P LS+IP++G LF++ + +    +     TP +V 
Sbjct: 545 FVNEGQSLLIAGYASDTDQTDLNNVPGLSRIPLVGNLFKHRQQSGSRLQRLFLLTPHIVS 604

Query: 421 P 421
           P
Sbjct: 605 P 605


>gi|167840250|ref|ZP_02466934.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 303

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 13/226 (5%)

Query: 205 VRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETV 259
           V       +  Q+S    S  P   S S + +      +     S+  VL          
Sbjct: 82  VDLQTGTGLTSQNSYANGSLNPTFGSISLSGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 141

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           ++ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 142 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 198

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P V+  G   +I L ++  V   +      ++P     + +T   +  G  +++AG   
Sbjct: 199 LPMVVEEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKV 257

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           D     + G+P+LSK+P+LGALFR++      +E     TP +++P
Sbjct: 258 DARSNTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 303


>gi|224584676|ref|YP_002638474.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469203|gb|ACN47033.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 532

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 223 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 273

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 274 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 302

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 303 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 362

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 363 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 420

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 421 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 476

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 477 -VVRVFMIEPKEIVDPLTPDASESVNN 502


>gi|94985829|ref|YP_605193.1| type II and III secretion system protein [Deinococcus geothermalis
           DSM 11300]
 gi|94556110|gb|ABF46024.1| type IV pilus assembly protein PilQ [Deinococcus geothermalis DSM
           11300]
          Length = 673

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 114/297 (38%), Gaps = 38/297 (12%)

Query: 152 RTIQDSQRAV---ELSETFLSQSGRNQYANSSSKKVMNLLNIAGE-----DQVTLKVTIA 203
              Q  Q+A      +     +         + ++V  +  +  +      Q+ ++V I 
Sbjct: 387 SNAQQPQQAAPNSNGATIIADKRTNTLIVRGTPEQVTQIAELVPQLDQVVPQINVQVRIQ 446

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           E+     + +G    +       S              G  F     L  F+    L AL
Sbjct: 447 EITETAARTLGLDWKVNFGGFNVSVGSGG--------LGATFDPTQSLVGFNIFPTLQAL 498

Query: 264 ERATAIRTLAEPTLTAISGQSA----------------SFTSGGQHLYKTVSSSTGATSV 307
           E     + + +  +T  SGQ +                S  SGG+      SSS      
Sbjct: 499 ENQGLTKRVYDGNITMQSGQRSLGSATNTQNASANAAASIKSGGRLEINIPSSSGNIE-- 556

Query: 308 TTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELP 363
              DYG+ L F  P V   G + LR++ +V+     +    +P+   +   +A +T+   
Sbjct: 557 KQIDYGLNLDFFDPQVAPDGTVTLRVRGQVNNIAGTLPTTSVPNLLNFTNSEAQSTITFK 616

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           SG T++++GLL     +  +G+P LS +P++GA F      RE++++ +  T  +VK
Sbjct: 617 SGQTVLMSGLLGTTESRTNDGVPFLSSLPVIGAAFGKQTTRREQSQLLVIITGSVVK 673


>gi|197263182|ref|ZP_03163256.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205360510|ref|ZP_02683952.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|197241437|gb|EDY24057.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205349182|gb|EDZ35813.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 514

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 205 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 255

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 256 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 284

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 285 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 344

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 345 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 402

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 403 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 458

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 459 -VVRVFMIEPKEIVDPLTPDASESVNN 484


>gi|50121028|ref|YP_050195.1| type III secretion system protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|42560404|gb|AAS20364.1| HrcC [Pectobacterium atrosepticum]
 gi|49611554|emb|CAG75002.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
          Length = 689

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 108/320 (33%), Gaps = 33/320 (10%)

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            S  V L G + +      A+ +          ++   +  ++++  +++  ++ V +  
Sbjct: 277 ASSRVTLSGKI-SADVRNNALLI--------RDDEKRRAEYQQLVEHIDVP-QNLVNIDA 326

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            I +V R  L ++         +     +        FVS           D   F   +
Sbjct: 327 IILDVDRTALSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADI 375

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            ALE       +A P++  +  Q A             ++      +     G  L  TP
Sbjct: 376 QALEGEGTASIVANPSVLTLENQPA--IVDFSRTAFITATGERVADIQPVTAGTSLQVTP 433

Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            V+  G    I L I  E  +   G   G+    +     T   +     +VL G   ++
Sbjct: 434 RVIGEGAQRSIQLVIDIEDGQVETGRE-GEASGVKRGTVSTQALIGENRALVLGGFHVEE 492

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                  IP+L  IP+LG LF ++R      E     TP LV      D + P  + S  
Sbjct: 493 SGDRDRRIPILGDIPLLGKLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSV 547

Query: 438 DDAKAF-FFNRVNKIYGPKE 456
           +  +     NRV +  G  +
Sbjct: 548 NRQQLNGAMNRVAQRNGKTD 567


>gi|269118877|ref|YP_003307054.1| type II and III secretion system protein [Sebaldella termitidis
           ATCC 33386]
 gi|268612755|gb|ACZ07123.1| type II and III secretion system protein [Sebaldella termitidis
           ATCC 33386]
          Length = 368

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 117/276 (42%), Gaps = 16/276 (5%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI-----AGEDQVTLKVTIAEV 205
           + T +   +  +++ + ++  G+      + +++  L  I       + Q+ +K TI + 
Sbjct: 90  IDTSELIPKLKDINTSKITGLGKELILKGTMEEINELKYIIEKFDRPKKQIQIKATIIDT 149

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
             ++ +++G   S   ++   +  F + F    +S  G     G     +    + AL+ 
Sbjct: 150 SDNLFERLGVDFSAGKNNDNKASDFLSSFIDGNLSLSGLLKTGGNFLGIN----IDALKE 205

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTV 322
              I+  A P L  + G         + +     S+   T        + GVV    P +
Sbjct: 206 NGDIKIEAMPVLLILEGSEGELRVTEEVIVGEKKSTIKDTEYIEPVFAEAGVVFKIKPEI 265

Query: 323 L---SPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
                   I L I +E+S   +  N   D  + +  K ++ V   +G ++ + GL ++  
Sbjct: 266 RGFGDSQEIILYIDSEISNFKLSSNFNADQGAKQKNKINSIVSFKNGTSVFIGGLKQNVQ 325

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  ++ +P+LSKIPILG+LFR  R N+E  +I+I  
Sbjct: 326 KDSEKRVPVLSKIPILGSLFRYKRKNKEIRDIYIEI 361


>gi|270488174|ref|ZP_06205248.1| type IV pilus secretin PilQ [Yersinia pestis KIM D27]
 gi|270336678|gb|EFA47455.1| type IV pilus secretin PilQ [Yersinia pestis KIM D27]
          Length = 422

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 76/196 (38%), Gaps = 6/196 (3%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  +  + L+++G +  +    G+++     F  +      +    F V  +
Sbjct: 219 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 278

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +    E+   +  +A P L     Q+AS   G    Y        A ++   
Sbjct: 279 GGRLLELELSAL-EQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 337

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P I +  G  +M     ++  T V +  G TI
Sbjct: 338 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 397

Query: 369 VLAGLLKDDIQQLKEG 384
           VL G+ +    ++   
Sbjct: 398 VLGGIFQQKNARVLIK 413


>gi|322614284|gb|EFY11215.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621652|gb|EFY18505.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624513|gb|EFY21346.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628844|gb|EFY25627.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633429|gb|EFY30171.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635995|gb|EFY32703.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639703|gb|EFY36388.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322650654|gb|EFY47059.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654733|gb|EFY51052.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658954|gb|EFY55207.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664479|gb|EFY60673.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668272|gb|EFY64429.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673748|gb|EFY69849.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677809|gb|EFY73872.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681361|gb|EFY77393.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322683763|gb|EFY79773.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323193848|gb|EFZ79051.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200318|gb|EFZ85400.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323205574|gb|EFZ90539.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210085|gb|EFZ94988.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216388|gb|EGA01115.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221135|gb|EGA05566.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226957|gb|EGA11139.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230759|gb|EGA14877.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234890|gb|EGA18976.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238929|gb|EGA22979.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241629|gb|EGA25660.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248224|gb|EGA32160.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251192|gb|EGA35065.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256076|gb|EGA39814.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263211|gb|EGA46749.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264286|gb|EGA47792.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271112|gb|EGA54540.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 562

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + +    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 333 DKLGVSLNQASISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 506

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532


>gi|194448425|ref|YP_002046858.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205359156|ref|ZP_02667567.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194406729|gb|ACF66948.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205338023|gb|EDZ24787.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
          Length = 556

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 247 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 297

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 298 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 326

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + +    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 327 DKLGVSLNQASISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 386

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 387 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 444

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 445 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 500

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 501 -VVRVFMIEPKEIVDPLTPDASESVNN 526


>gi|253581772|ref|ZP_04858996.1| general secretion pathway protein D [Fusobacterium varium ATCC
           27725]
 gi|251836121|gb|EES64658.1| general secretion pathway protein D [Fusobacterium varium ATCC
           27725]
          Length = 563

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 96/259 (37%), Gaps = 26/259 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-----SSSGPSKSFA--ADFGGKFVSEGGDFS 246
            QV +   I +V  ++ + +GF            +SG   S    A      VS G   +
Sbjct: 282 QQVRITSQILDVTDNLFETLGFDWLYNNVGSVEKNSGLDISLIGKAALDSAGVSFGSGIN 341

Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           +    +  +      ++ L+    +   A P++    G+   F    + +          
Sbjct: 342 LVRQFNNGNDVLGLGINLLQATQDLVISAMPSILVADGEEGEFKITEEVIVGEEKKENDN 401

Query: 305 TSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSE------------PVIGVNAGD 347
           T  T       + G++L   P +   G I L++  EVS                G    +
Sbjct: 402 TEKTTYTPLFREAGIILKVKPLIKENGTIFLKVMIEVSNFRLKKNEKENMISEGGTYNSE 461

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             S   R  +TTV++  G TI + GL +  IQ L   +P L  +P++   F+N    +E 
Sbjct: 462 GGSKIGRSIETTVKMRDGETIFIGGLKRAVIQNLDSQVPFLGTLPVINIFFKNQSVKKEI 521

Query: 408 TEIFIAATPFLVKPVAMRD 426
           T+I+I     + K    +D
Sbjct: 522 TDIYIKLKVDIEKDTWEKD 540


>gi|171319944|ref|ZP_02909020.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
 gi|171094800|gb|EDT39838.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
          Length = 679

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 101/278 (36%), Gaps = 44/278 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222
           + ++N L+      V + VTI ++  D L  +G                        T  
Sbjct: 326 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274
           +   +       G     + G F   G+    S    L        +AL +    +  ++
Sbjct: 385 NGAGNPPLTFGIGTSETGQTGAFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS--------- 324
           P + A+    A   +  Q   +       +  SVTT   G  +  TP ++          
Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAV 501

Query: 325 ---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  
Sbjct: 502 SGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLN 561

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           K G+P LS IP++G LF+ +  +    E F   TP +V
Sbjct: 562 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVV 599


>gi|300697476|ref|YP_003748137.1| type III secretion protein [Ralstonia solanacearum CFBP2957]
 gi|299074200|emb|CBJ53745.1| Type III secretion protein [Ralstonia solanacearum CFBP2957]
          Length = 589

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 88/246 (35%), Gaps = 25/246 (10%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240
           +  +I ++    L+Q+G    +  S     +G   +   +  G   S             
Sbjct: 347 ISASIIDITETALEQLGVDWRLHNSRFDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 406

Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              GG  S             + AL++    R  A P +  +    A   +         
Sbjct: 407 TPAGGVLSAVIGGGSRYLMARISALQQTNQARITASPKVATLDNTEAVMDNRQNFYVPVA 466

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                +  +     GV L   P V+  G   RI + +  E    +     G++P     +
Sbjct: 467 GYQ--SADLYAISAGVSLRVLPMVVMDGGTVRIRMNVHIE-DGQITSQQVGNLPVTSQSE 523

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            DT   +  G ++++AG   D   +  + +P LSKIP++GALFR  +   +  +     T
Sbjct: 524 IDTQALINEGESLLIAGYSVDQQAKTVDAVPGLSKIPLVGALFRTDQTTGQRFQRMFLVT 583

Query: 416 PFLVKP 421
           P ++ P
Sbjct: 584 PRVITP 589


>gi|172063770|ref|YP_001811421.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia ambifaria MC40-6]
 gi|171996287|gb|ACB67205.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MC40-6]
          Length = 680

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 101/278 (36%), Gaps = 44/278 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222
           + ++N L+      V + VTI ++  D L  +G                        T  
Sbjct: 326 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274
           +   +       G     + G F   G+    S    L        +AL +    +  ++
Sbjct: 385 NGAGNPPLTFGIGTSETGQTGAFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS--------- 324
           P + A+    A   +  Q   +       +  SVTT   G  +  TP ++          
Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAV 501

Query: 325 ---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  
Sbjct: 502 SGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLN 561

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           K G+P LS IP++G LF+ +  +    E F   TP +V
Sbjct: 562 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVV 599


>gi|297621836|ref|YP_003709973.1| putative type III secretion protein SctC [Waddlia chondrophila WSU
            86-1044]
 gi|297377137|gb|ADI38967.1| putative type III secretion protein SctC [Waddlia chondrophila WSU
            86-1044]
          Length = 1115

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 92/268 (34%), Gaps = 43/268 (16%)

Query: 194  DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------- 246
             QV +++ I E   +     G        S G S + A  + G      G  +       
Sbjct: 802  RQVFIEMLILETTLEDSLDYGVAWG--SHSGGGSTATAQAYIGGASPLVGALNRDLSGTN 859

Query: 247  -------------VKGVLDR---------FSFETVLHALERATAIRTLAEPTLTAISGQS 284
                           G++ R          +   ++ A       + +  P +     ++
Sbjct: 860  TPDASNLITDVGYTLGIIGRRLTHNGTQFATLGALVTAQHNRQNSKVILNPKIITEDNKT 919

Query: 285  ASFTSGGQHLYKTVSSSTG-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            A    G    ++T S S        T+    D G  +  TP + +   + L I+ EVS  
Sbjct: 920  AELFVGINTRFQTNSISNDEGSVITTNFEYRDVGTTIRVTPLIGNGDIVTLEIEEEVSRV 979

Query: 340  VIGVNAG-------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                  G       + P+  + +  TTV +P    ++++GL++D+    +   P L  IP
Sbjct: 980  APQAVQGGSDIQDPNAPTTSISRTSTTVHVPDRHFVIISGLIQDEKIHSRNQFPCLGGIP 1039

Query: 393  ILGALFRNSRFNREETEIFIAATPFLVK 420
            I+GA F     +  +    +   P ++ 
Sbjct: 1040 IIGAAFSAKINDDVKRTQMLFIRPQIID 1067


>gi|219566964|dbj|BAH04995.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
          Length = 568

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 25/246 (10%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240
           +  +I ++  + L+Q+G    +  S     +G   +   +  G   S             
Sbjct: 326 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 385

Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              GG  S             + AL++    R  A P +  +    A   +         
Sbjct: 386 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 445

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                +  +     GV L   P V+  G   RI + +  E    +     G++P     +
Sbjct: 446 GYQ--SADLYAISAGVSLRVLPMVVMDGGTVRIRMNVHIE-DGQITSQQVGNLPITSQSE 502

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            DT   +  G ++++AG   +   +  + +P LSKIP++GALFR  +   +  +     T
Sbjct: 503 IDTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVT 562

Query: 416 PFLVKP 421
           P ++ P
Sbjct: 563 PRVITP 568


>gi|200387736|ref|ZP_03214348.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204928222|ref|ZP_03219422.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|199604834|gb|EDZ03379.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204322544|gb|EDZ07741.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 514

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 205 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 255

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 256 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 284

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + +    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 285 DKLGVSLNQASISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 344

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 345 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 402

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 403 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 458

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 459 -VVRVFMIEPKEIVDPLTPDASESVNN 484


>gi|197335747|ref|YP_002157088.1| fimbrial assembly protein PilQ [Vibrio fischeri MJ11]
 gi|197317237|gb|ACH66684.1| fimbrial assembly protein PilQ [Vibrio fischeri MJ11]
          Length = 562

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 133/362 (36%), Gaps = 90/362 (24%)

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
           VG+  + ++   G                            +I V+  +++++L  +   
Sbjct: 253 VGEGEITMLSSRG----------------------------SITVDERTNSLLLRDLPEN 284

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           I                        +  K +++ L+I  + QV ++  I  V    L ++
Sbjct: 285 I------------------------TVIKDIIDTLDIPIK-QVQIEARIVTVNEGNLDEL 319

Query: 214 GFQHSITGSSSGPS--KSFAADFGGKFVSEGGD--------------------------- 244
           G +  IT ++   +   S  ++     + +GG                            
Sbjct: 320 GVRWGITNTNGSTTVGGSIESNLAAVGLYDGGGSDDKKSGNNSLPVDDFLNVNLGLANPA 379

Query: 245 -----FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                F V  +      +  L AL+  +    ++ P L   + + A    G +  Y   S
Sbjct: 380 ASSIAFQVAKLGSDLLLDLELSALQAESKAEIISSPRLITTNKKPAYIEQGTEIPYLEAS 439

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKAD 357
           SS GATSV+     + L  TP +    R+ L +      P  V+    G+  +   ++  
Sbjct: 440 SS-GATSVSFKKAVLSLMVTPQITPDNRLVLDLTVTQDRPGQVVKTGTGEAVAIDTQRIG 498

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V + +G T+VL G+ +  +    E +PLL  +P+LGALFR S  N  + E+ I  TP 
Sbjct: 499 TQVLVDNGETVVLGGIYQHSLSNSVEKVPLLGDLPLLGALFRRSSENIGKKELLIFVTPK 558

Query: 418 LV 419
           +V
Sbjct: 559 VV 560


>gi|17549095|ref|NP_522435.1| Hrp conserved HRCC transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|2833448|sp|Q52498|HRPA_RALSO RecName: Full=Hypersensitivity response secretion protein hrpA;
           Flags: Precursor
 gi|6066715|emb|CAB58261.1| HrpA [Ralstonia solanacearum]
 gi|17431346|emb|CAD18025.1| hrp conserved hrcc transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|1097294|prf||2113360W hrpA gene
          Length = 568

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 25/246 (10%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240
           +  +I ++  + L+Q+G    +  S     +G   +   +  G   S             
Sbjct: 326 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 385

Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              GG  S             + AL++    R  A P +  +    A   +         
Sbjct: 386 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 445

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                +  +     GV L   P V+  G   RI + +  E    +     G++P     +
Sbjct: 446 GYQ--SADLYAISAGVSLRVLPMVVMDGGTVRIRMNVHIE-DGQITSQQVGNLPITSQSE 502

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            DT   +  G ++++AG   +   +  + +P LSKIP++GALFR  +   +  +     T
Sbjct: 503 IDTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVT 562

Query: 416 PFLVKP 421
           P ++ P
Sbjct: 563 PRVITP 568


>gi|167577363|ref|ZP_02370237.1| type II/III secretion system protein [Burkholderia thailandensis
           TXDOH]
          Length = 605

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S S A +      +     S+  VL          + ALE +   RT A P
Sbjct: 400 NGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLARIDALESSNQARTDASP 459

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 460 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVEEGGRTQIKLD 516

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 517 VRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 575

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P+LGALFR++      +E     TP +++P
Sbjct: 576 PLLGALFRSTDKQDSHSERLFLVTPRVIEP 605


>gi|157364734|ref|YP_001471501.1| type II and III secretion system protein [Thermotoga lettingae TMO]
 gi|157315338|gb|ABV34437.1| type II and III secretion system protein [Thermotoga lettingae TMO]
          Length = 385

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 5/227 (2%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV + V ++EV +D L +IG      G + G ++ +  D+        G  SV+  + 
Sbjct: 164 PRQVKISVVVSEVSKDNLGEIGLDQ--IGYTFGANQQYNEDWTAVLGLISGVLSVQTDVF 221

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +    L ALE+    +  A+P +     + A    G + +          T+ T    
Sbjct: 222 G-TIVARLRALEQDQKAKIKADPWIIVQENKPARLFVGQREIIILQPEEGTTTTETVDVG 280

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            V +  T  V+    + + +   +S          + S +  +  TT+ + SG T+V++G
Sbjct: 281 -VGIDITARVVGKNELEINVAPNISHFTTAQTTSSL-STKRSELSTTLRIQSGQTVVISG 338

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  ++      GIPLL  IP+L  LF     ++ + E+ I  +  ++
Sbjct: 339 LTVENSSDGYTGIPLLGNIPLLRYLFGVKSDSQSQREVIIFLSAEIL 385


>gi|53716218|ref|YP_106182.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|124381659|ref|YP_001025783.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|126446314|ref|YP_001077867.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|254201058|ref|ZP_04907423.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei FMH]
 gi|254205023|ref|ZP_04911376.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei JHU]
 gi|254359145|ref|ZP_04975417.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei 2002721280]
 gi|52422188|gb|AAU45758.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|126239168|gb|ABO02280.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|147748670|gb|EDK55745.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei FMH]
 gi|147754609|gb|EDK61673.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei JHU]
 gi|148028332|gb|EDK86292.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei 2002721280]
 gi|261826429|gb|ABM99750.2| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
          Length = 599

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 394 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 453

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 454 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGCTQIKLD 510

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 511 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 569

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 570 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 599


>gi|332297951|ref|YP_004439873.1| type II and III secretion system protein [Treponema brennaborense
           DSM 12168]
 gi|332181054|gb|AEE16742.1| type II and III secretion system protein [Treponema brennaborense
           DSM 12168]
          Length = 667

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 12/225 (5%)

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           I + ++      G   S++  S G       + G          +V G L    F   ++
Sbjct: 414 ILQYQKSSNLSWGITSSMSPLSPGNKTLVTGELGNLLNLSFDAITVFGYL----FAARIN 469

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDY-GVV 315
           A           + TL  +SGQ  +F +     Y+  +          T +T     G+V
Sbjct: 470 AALSKNEANVFTDTTLYGVSGQKITFKNTNTFRYRDSNIDPQTGKPLYTGITREIISGLV 529

Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           L     +   G + + +   VS+    +    G+ P    +   T V+  SG  +VL+GL
Sbjct: 530 LEIDGWISGDGMVTMDVTASVSKRGVDVSTKTGNPPPTSEKIVTTQVKARSGEPVVLSGL 589

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            ++D   +++G+P +S+IP+LG LF++     E+ E+ I   P +
Sbjct: 590 TQNDKTFVEQGVPFISRIPVLGNLFKSRDETEEKNEMVIYLVPHI 634


>gi|194736395|ref|YP_002115850.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197300771|ref|ZP_02660996.2| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194711897|gb|ACF91118.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290685|gb|EDY30039.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 514

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  +++ G    V  I+   +A+++++           
Sbjct: 205 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 255

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 256 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 284

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + +    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 285 DKLGVSLNQASISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 344

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 345 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 402

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+      
Sbjct: 403 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 458

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438
                F+++P  + D   PD   SV +
Sbjct: 459 -VVRVFMIEPKEIVDPLTPDASESVNN 484


>gi|254255049|ref|ZP_04948366.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
 gi|124899694|gb|EAY71537.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
          Length = 552

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 141/421 (33%), Gaps = 36/421 (8%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
           +  L+ S P +     ++ AN+     + ++  + + I +    VI         DV++ 
Sbjct: 145 ASTLYVSGPPIYVDLVVQMANSLDQETASIDEKRVEIIKVHNTFVIDRTFTRRTGDVVI- 203

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
            P  A           L  + +G+ N I+         + + +           L   I 
Sbjct: 204 -PGIAT----------LVQRAIGEENAIVETKRLDASASKEAVNPAAADGTMPALDAAIG 252

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQ-RAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
               R           G V+T      R V   ET               ++++  L+  
Sbjct: 253 PPPTR---------PSGAVQTSSSHGVRIVAYPETNSLMVKGTPEQVKFVRQLVQALD-E 302

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            +  + L + I ++ R+ L Q+G     T S  G S S   +      + GG        
Sbjct: 303 EKRHIELALWIIDLEREALDQLGVNWRGTVSLGGMSASLNMNNNTSLSTVGGT------- 355

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
               F   + AL R    + ++ P +       A F S      K V     A  +    
Sbjct: 356 ---EFIASVTALARDRRAQIVSRPVVLTQENTPAVFDSSQTFYAKLVGER--AVDLKEVT 410

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           YG +++  P   +   I L +  E  S     V+   MP+    K  T   +P G ++++
Sbjct: 411 YGTMVNVVPRFNAKDDIELALNIEDGSAKSSNVDQDPMPTVNRTKISTVARVPKGKSLLV 470

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            G  + +   + E IP L  +P +G LFR       +T      +P  +      D    
Sbjct: 471 GGYTRGETGDVVEKIPGLGSLPFIGGLFRFKTEVNRDTVRVFLISPREITDGLDTDFRTI 530

Query: 431 D 431
           D
Sbjct: 531 D 531


>gi|237743199|ref|ZP_04573680.1| general secretion pathway protein D [Fusobacterium sp. 7_1]
 gi|229433495|gb|EEO43707.1| general secretion pathway protein D [Fusobacterium sp. 7_1]
          Length = 423

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 21/248 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              QV +   I ++  ++ +++GF         S    S  A   GK    G   +V  V
Sbjct: 174 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIV 233

Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
               +        ++ LE    +   + PTL   SG+   F    + +    +       
Sbjct: 234 RQFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 293

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353
             +     + G+++   P +     I L I  E+S+     N  ++              
Sbjct: 294 RYSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 353

Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E +++
Sbjct: 354 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 413

Query: 411 FIAATPFL 418
           +I     +
Sbjct: 414 YIKLKVEI 421


>gi|237741044|ref|ZP_04571525.1| general secretion pathway protein D [Fusobacterium sp. 4_1_13]
 gi|229431088|gb|EEO41300.1| general secretion pathway protein D [Fusobacterium sp. 4_1_13]
          Length = 423

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 21/248 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              QV +   I ++  ++ +++GF         S    S  A   GK    G   +V  V
Sbjct: 174 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIV 233

Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
               +        ++ LE    +   + PTL   SG+   F    + +    +       
Sbjct: 234 RQFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 293

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353
             +     + G+++   P +     I L I  E+S+     N  ++              
Sbjct: 294 RYSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 353

Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E +++
Sbjct: 354 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 413

Query: 411 FIAATPFL 418
           +I     +
Sbjct: 414 YIKLKVEI 421


>gi|254175910|ref|ZP_04882568.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|160696952|gb|EDP86922.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
          Length = 599

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 394 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 453

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 454 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGCTQIKLD 510

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 511 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 569

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 570 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 599


>gi|197286525|ref|YP_002152397.1| type III secretion system protein [Proteus mirabilis HI4320]
 gi|194684012|emb|CAR45306.1| type III secretion system protein [Proteus mirabilis HI4320]
          Length = 571

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 95/277 (34%), Gaps = 23/277 (8%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             ++   +    +++ L+   + QV L + I ++ +     +G     +  S   +  F 
Sbjct: 298 KTSREGLALVSSLISQLDKP-KRQVELSLWIIDISKSKADSLGVNWQGSYGSGKNTFFF- 355

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                       + +    +  FSF + + AL      + ++ P L       A F +  
Sbjct: 356 ------------NTASLSAVSGFSFLSKIKALSEEGEAKMVSRPILLTQENTPAIFDNNT 403

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTV-LSPGRIGLRIQTEVSEPVIGVNAG---- 346
               +       +   TT  +G ++   P +  +   I + I  E        +      
Sbjct: 404 TFYTQIKGERVASLESTT--FGTMISVLPRISNTNQEIEMIINLEDGAEKKSDDEDREEG 461

Query: 347 --DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P        T   +  GG++++ G  ++D  + +  IP LS IP++G  F     N
Sbjct: 462 IEKLPVINRTNISTVARVSEGGSLLIGGYTREDNIKAENKIPFLSAIPLVGRAFSYQSDN 521

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
            ++        P L+       L    +H  +  D K
Sbjct: 522 NKKMVRIFMLQPRLLDKTDTHGLDSLTEHPFLPMDKK 558


>gi|254250197|ref|ZP_04943517.1| Type II secretory pathway, component PulD [Burkholderia cenocepacia
           PC184]
 gi|124876698|gb|EAY66688.1| Type II secretory pathway, component PulD [Burkholderia cenocepacia
           PC184]
          Length = 463

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 103/283 (36%), Gaps = 44/283 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222
           + ++N L+      V + VTI ++  D L  +G                        T  
Sbjct: 78  QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQY 136

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274
           +   +       G     + G F   G+    S    L        +AL +    +  ++
Sbjct: 137 NGVGNPPLTFGIGTSETGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 196

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS--------- 324
           P + A+    A   +  Q   +       +  SVTT   G  +  TP ++          
Sbjct: 197 PKVLALDNTEAILENLTQFYVQVPGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAV 253

Query: 325 ---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  
Sbjct: 254 SGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLN 313

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           K G+P LS IP++G LF+ +  +    E F   TP +V   +M
Sbjct: 314 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASM 356


>gi|327538876|gb|EGF25517.1| general secretion pathway protein D [Rhodopirellula baltica WH47]
          Length = 1261

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 110/320 (34%), Gaps = 61/320 (19%)

Query: 160  AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            AV  ++T       +       +++++ L+      V +K  IAEVR D   +IG +  +
Sbjct: 730  AVAEAQTNSVLLSVSPRIYEEVRQLIDRLDRR-PPMVLIKTLIAEVRLDDGFEIGGEFGL 788

Query: 220  TGS-------------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------------ 254
              S             +  P+     +FGG  +     F  + +  +             
Sbjct: 789  QDSLLFDRGKATGAIATDNPASDPGFNFGGTNLPNSNSFGQESLASQGLTNFGATATQLT 848

Query: 255  -----------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                             S    L  L  A  ++ L+ P +            G      T
Sbjct: 849  RVGGLNSGGFVFSAASESVNLFLRTLRVANRLQILSRPEIMTADNTEGYVQVGQNFPRPT 908

Query: 298  --VSSSTGATS------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD 347
                +STG  S      +   D G++L  TP V + G I + I    S     +G   G 
Sbjct: 909  ELTFTSTGGNSTQPIIGIEDVDIGIILRVTPRVGADGMIFMAIDATRSAINNDVGQTIGS 968

Query: 348  --------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                    +P+     A  TV    G T+V  GL++   Q     +P L+ IP+LG  F+
Sbjct: 969  FDNGDPIFVPAIDTTTAQATVTAFDGQTVVFGGLIQKYRQNRTSRVPYLADIPLLGTFFK 1028

Query: 400  NSRFNREETEIFIAATPFLV 419
                  + +E+ +  TP LV
Sbjct: 1029 YDSEIEQRSELLVVMTPILV 1048


>gi|167003376|ref|ZP_02269162.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei PRL-20]
 gi|243061081|gb|EES43267.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei PRL-20]
          Length = 599

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 394 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 453

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 454 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGCTQIKLD 510

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 511 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 569

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E F   TP +++P
Sbjct: 570 PLVGALFRSTDKQNSHSERFFLVTPRVIEP 599


>gi|170699432|ref|ZP_02890477.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
 gi|170135688|gb|EDT03971.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
          Length = 680

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 103/283 (36%), Gaps = 44/283 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222
           + ++N L+      V + VTI ++  D L  +G                        T  
Sbjct: 326 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274
           +   +       G     + G F   G+    S    L        +AL +    +  ++
Sbjct: 385 NGAGNPPLTFGIGTSETGQTGTFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS--------- 324
           P + A+    A   +  Q   +       +  SVTT   G  +  TP ++          
Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAV 501

Query: 325 ---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  
Sbjct: 502 SGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLN 561

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           K G+P LS IP++G LF+ +  +    E F   TP +V   AM
Sbjct: 562 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTAAM 604


>gi|126457187|ref|YP_001076198.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1106a]
 gi|242313849|ref|ZP_04812866.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
 gi|126230955|gb|ABN94368.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106a]
 gi|242137088|gb|EES23491.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
          Length = 599

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 394 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 453

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 454 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 510

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 511 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 569

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 570 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 599


>gi|330963695|gb|EGH63955.1| type III secretion component [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 195

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 10/192 (5%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           +  G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FGK  GQ ++I 
Sbjct: 13  IAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIA 72

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           +  +G++   L + +    A +   L+     S  R+      V+  G V+ + ++    
Sbjct: 73  LDSEGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLN 132

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
            L    LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   +   
Sbjct: 133 AL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALF 182

Query: 222 SSSGPSKSFAAD 233
           ++   S      
Sbjct: 183 NNGTFSFGLLTG 194


>gi|53722615|ref|YP_111600.1| type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|52213029|emb|CAH39067.1| putative type III secretion system protein [Burkholderia
           pseudomallei K96243]
          Length = 601

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|38639336|gb|AAR25802.1| BcscC [Burkholderia multivorans E243]
          Length = 504

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 107/314 (34%), Gaps = 47/314 (14%)

Query: 196 VTLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPSKSFAADFGG 236
           V + VTI ++  D L  +G                        T  +   +       G 
Sbjct: 163 VEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTFGIGA 222

Query: 237 KFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAEPTLTAISGQSASFT 288
               + G F   G+    S    L        +AL +    +  ++P + A+    A   
Sbjct: 223 SESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTEAILE 282

Query: 289 SGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTE 335
           +  Q   +       +  SVTT   G  +  TP ++                + + I  +
Sbjct: 283 NLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDDAIRNAAAVSGRPESVMMSIDIQ 339

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
               V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP++G
Sbjct: 340 DGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIG 399

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDDAKAFFFNR--VNKI 451
            LF+ +  +    E F   TP +V   +M   D S  +       D       R   N I
Sbjct: 400 NLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPDNDI 459

Query: 452 YGPKEASEVEGQNY 465
             P     + G  +
Sbjct: 460 AVPLTPRPLPGTKF 473


>gi|254185101|ref|ZP_04891690.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
 gi|184215693|gb|EDU12674.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
          Length = 601

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|238796118|ref|ZP_04639629.1| Possible type III secretion system protein [Yersinia mollaretii
           ATCC 43969]
 gi|238720063|gb|EEQ11868.1| Possible type III secretion system protein [Yersinia mollaretii
           ATCC 43969]
          Length = 556

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 93/251 (37%), Gaps = 21/251 (8%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           +   QV L + I +V R  +  +G +           ++ +   GG  V+    F+   +
Sbjct: 299 SSRSQVELSLWIIDVVRSKVDDLGVRW----------EAGSIGVGGGTVT----FNRSTL 344

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            D   F   + A+ ++   R ++ P +       A F +       T        ++   
Sbjct: 345 TDSSMFLAQIDAISKSGNARIVSRPVILTQENVPAMFDNNTSFY--TRVEGERVATLEQV 402

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
            YG ++   P + +   + + +  E       +     +   +P       +T   +   
Sbjct: 403 TYGTMISVLPRLSAGNSVEMEVNIEDGGLSRDKSGKVADVEGLPQVNRTNINTVARVGRN 462

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            ++++ G  +D ++  +  IPLL  IP++G LF+    N+++        P L+      
Sbjct: 463 NSLLIGGYTRDQVEDSESQIPLLGDIPLVGNLFKYRAHNQQKMIRIFLIQPRLLDENEAW 522

Query: 426 DLSRPDDHYSV 436
           D  +  D+  +
Sbjct: 523 DGRQFSDNERL 533


>gi|237508433|ref|ZP_04521148.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
 gi|235000638|gb|EEP50062.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
          Length = 601

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|217425129|ref|ZP_03456624.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
 gi|217391734|gb|EEC31761.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
          Length = 601

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|134281959|ref|ZP_01768665.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
 gi|134246488|gb|EBA46576.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
          Length = 601

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|254186924|ref|ZP_04893440.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157934608|gb|EDO90278.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 599

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 394 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 453

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 454 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 510

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 511 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 569

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 570 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 599


>gi|126445193|ref|YP_001063243.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 668]
 gi|126224684|gb|ABN88189.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 668]
          Length = 601

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|76819172|ref|YP_335807.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1710b]
 gi|226198470|ref|ZP_03794038.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|254264542|ref|ZP_04955407.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
 gi|254301393|ref|ZP_04968837.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|76583645|gb|ABA53119.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710b]
 gi|157811287|gb|EDO88457.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|225929527|gb|EEH25546.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|254215544|gb|EET04929.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
          Length = 601

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|254194240|ref|ZP_04900672.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei S13]
 gi|169650991|gb|EDS83684.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei S13]
          Length = 601

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|171915532|ref|ZP_02931002.1| fimbrial assembly protein [Verrucomicrobium spinosum DSM 4136]
          Length = 634

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 106/321 (33%), Gaps = 81/321 (25%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
             +++    A   QV +++ + EV    +K++G    +   +   S+   A  GG+ V  
Sbjct: 300 DSLVDQAVNATAKQVEIQIRMVEVSDARVKELGIDWLLGQFNVPGSEKIFASGGGQSVPG 359

Query: 241 -----------------------------------------EGGDFSVKGVLDRFSFETV 259
                                                      G F+V GVL    F+ V
Sbjct: 360 EVLPFAGRTVTDGLRSATEVLGLRSSGTRIGRALVPGADAKSPGAFAVSGVLTDPQFQGV 419

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-------TVSSSTGA-------- 304
           L  L ++  I  +A PTL   SGQ A+     +  Y        T + +TG         
Sbjct: 420 LRGLNQSKGIDVMATPTLFTKSGQRAALKMVKEFRYPKEYDAPETPTRTTGGGLGKPSSP 479

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE--------------VSEPVIGVNAGDM-- 348
            S    D G+V    P +     I L +                  +     +    +  
Sbjct: 480 RSFEKRDVGIVFEVEPVIGQNKVIELSLSPSFLEFEGFIDYGQDFQNSTTDRLTGQPVYF 539

Query: 349 --------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                   P +R  +  T V +  G T+VL G   +   +  + +P++  +P++G  F++
Sbjct: 540 TVENQILQPIFRANRISTAVSIWDGCTVVLGGAAFEKRFRADDKVPVVGDLPLIGRTFQS 599

Query: 401 SRFNREETEIFIAATPFLVKP 421
                E T +    T  +V P
Sbjct: 600 KVKQVERTNVLFFVTARIVDP 620


>gi|260495319|ref|ZP_05815446.1| general secretion pathway protein D [Fusobacterium sp. 3_1_33]
 gi|260197097|gb|EEW94617.1| general secretion pathway protein D [Fusobacterium sp. 3_1_33]
          Length = 515

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 21/248 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              QV +   I ++  ++ +++GF         S    S  A    K    G   +V  V
Sbjct: 266 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIV 325

Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
               +      T ++ LE    +   + PTL   SG+   F    + +    +       
Sbjct: 326 RQFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 385

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353
             +     + G+++   P +     I L I  E+S+     N  ++              
Sbjct: 386 RYSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 445

Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E +++
Sbjct: 446 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 505

Query: 411 FIAATPFL 418
           +I     +
Sbjct: 506 YIKLKVEI 513


>gi|115358977|ref|YP_776115.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia ambifaria AMMD]
 gi|115284265|gb|ABI89781.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria AMMD]
          Length = 681

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 103/283 (36%), Gaps = 44/283 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222
           + ++N L+      V + VTI ++  D L  +G                        T  
Sbjct: 326 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274
           +   +       G     + G F   G+    S    L        +AL +    +  ++
Sbjct: 385 NGAGNPPLTFGIGTSETGQTGAFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS--------- 324
           P + A+    A   +  Q   +       +  SVTT   G  +  TP ++          
Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAV 501

Query: 325 ---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  
Sbjct: 502 SGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLN 561

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           K G+P LS IP++G LF+ +  +    E F   TP +V   AM
Sbjct: 562 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTAAM 604


>gi|256027610|ref|ZP_05441444.1| general secretion pathway protein D [Fusobacterium sp. D11]
          Length = 515

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 21/248 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              QV +   I ++  ++ +++GF         S    S  A    K    G   +V  V
Sbjct: 266 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIV 325

Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
               +      T ++ LE    +   + PTL   SG+   F    + +    +       
Sbjct: 326 RQFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 385

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353
             +     + G+++   P +     I L I  E+S+     N  ++              
Sbjct: 386 RYSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 445

Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E +++
Sbjct: 446 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 505

Query: 411 FIAATPFL 418
           +I     +
Sbjct: 506 YIKLKVEI 513


>gi|134294019|ref|YP_001117755.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia vietnamiensis G4]
 gi|134137176|gb|ABO58290.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia vietnamiensis G4]
          Length = 679

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 109/308 (35%), Gaps = 46/308 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222
           + +++ L+      V + VTI ++  D L  +G                        T  
Sbjct: 326 QSLIDQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274
           +   +       G     + G F   G+    S    L        +AL +    +  ++
Sbjct: 385 NGAGNPPLTFGIGASETGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS--------- 324
           P + A+    A   +  Q   +       +  SVTT   G  +  TP ++          
Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDEAIRHAAAV 501

Query: 325 ---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  
Sbjct: 502 SGTPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLN 561

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDD 439
           K G+P LS IP++G LF+ +  +    E F   TP +V   +M   D S  +       D
Sbjct: 562 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASMYAPDGSPVNPGADAPAD 621

Query: 440 AKAFFFNR 447
             A    R
Sbjct: 622 PNAMSMYR 629


>gi|282892150|ref|ZP_06300624.1| hypothetical protein pah_c209o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497951|gb|EFB40296.1| hypothetical protein pah_c209o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 852

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 104/281 (37%), Gaps = 29/281 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--------EGGD 244
           +  V ++V + E R +   Q G     TG+++  + + +  +   F            G 
Sbjct: 529 KKMVQIEVLLFEKRLNRDNQFGLNLLRTGNAATNTHTTSVQWNNIFPVGASVVHPENAGV 588

Query: 245 F-----SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----- 294
           F       K      +++     L     I+  A P++ AI+   A+     +       
Sbjct: 589 FEYLVSRTKTASGIPAYDFAYRFLLSQDDIQINASPSVVAINQTPATIEIAEEISVSTGI 648

Query: 295 --YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG--------LRIQTEVSEPVIGVN 344
               T  + T   S     YG+ +   PT+     +         + ++T++    I  +
Sbjct: 649 FEIPTEGNVTLKDSFARARYGIKIEIIPTIHVREDMNDPEDPVDYVTLETDILFETINPS 708

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P    R     V +P   T+++ GL + ++   KE IP L +IP +G LF  ++  
Sbjct: 709 VDSRPDVTRRHITNQVRIPDQQTVIIGGLRRKNLSDSKESIPYLGEIPGIGKLFSITQLT 768

Query: 405 REETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFF 444
              TE+FI  TP ++   A   D  R ++      D   F 
Sbjct: 769 DSATEMFIFITPKIITEAAEDFDRIRCEEMQRRPGDIPGFL 809


>gi|497225|gb|AAA74040.1| invG [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 563

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 103/260 (39%), Gaps = 25/260 (9%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++  L++A +  V L + I ++ +  L+++G   S T +             G  +    
Sbjct: 294 LVKALDVA-KRHVELSLWIVDLNKSDLERLGTSWSGTVTI------------GDKLGVSL 340

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           + S    LD   F   ++ALE       ++ P +T+    SA F +      K +     
Sbjct: 341 NQSSISTLDGSRFIAAVNALEEKKQATVVSAPGITSSGKCSAIFDNNRTFYTKLIGERNV 400

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADT 358
           A    T  YG ++   P   + G+I + +  E             +   +P        T
Sbjct: 401 ALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLIST 458

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +P G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+
Sbjct: 459 IARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN-----VVRVFM 513

Query: 419 VKPVAMRDLSRPDDHYSVED 438
           ++P  + D   PD   SV +
Sbjct: 514 IEPKEIVDPLTPDASESVNN 533


>gi|107025868|ref|YP_623379.1| Type III secretion system outer membrane pore YscC/HrcC
           [Burkholderia cenocepacia AU 1054]
 gi|116692948|ref|YP_838481.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia cenocepacia HI2424]
 gi|105895242|gb|ABF78406.1| Type III secretion system outer membrane pore YscC/HrcC
           [Burkholderia cenocepacia AU 1054]
 gi|116650948|gb|ABK11588.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia cenocepacia HI2424]
          Length = 681

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 103/283 (36%), Gaps = 44/283 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222
           + ++N L+      V + VTI ++  D L  +G                        T  
Sbjct: 327 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQY 385

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274
           +   +       G     + G F   G+    S    L        +AL +    +  ++
Sbjct: 386 NGVGNPPLTFGIGTSETGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 445

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS--------- 324
           P + A+    A   +  Q   +       +  SVTT   G  +  TP ++          
Sbjct: 446 PKVLALDNTEAILENLTQFYVQVPGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAV 502

Query: 325 ---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              P  + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  
Sbjct: 503 SGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLN 562

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           K G+P LS IP++G LF+ +  +    E F   TP +V   +M
Sbjct: 563 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASM 605


>gi|320106632|ref|YP_004182222.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
 gi|319925153|gb|ADV82228.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
          Length = 819

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 79/189 (41%), Gaps = 13/189 (6%)

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----------ATS 306
              L A    +  R L  P L +  GQ A    G +    T S ++G           T 
Sbjct: 420 SAALAATLSDSDTRVLQNPRLRSTDGQRAQLKIGQRIPVATGSYNSGVSTGVASVGVQTQ 479

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPS 364
               D GV +  TPTV     I L+++ EVS       ++    P    R ++  ++L  
Sbjct: 480 FQYIDIGVQIDLTPTVHQNHEISLKMKIEVSTHANDETISGVVEPVIGQRISEQVIQLKE 539

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVA 423
           G   +L+G+L         G P LS+IP+LG +F N   +R  TEI     P +V+  V 
Sbjct: 540 GEPSILSGILTKTESDSLGGTPGLSQIPLLGRIFSNKTRDRASTEIVFVLVPHIVRESVL 599

Query: 424 MRDLSRPDD 432
            R  +RP D
Sbjct: 600 TRMNTRPID 608


>gi|312171108|emb|CBX79367.1| Type III secretion system outer membrane pore HrcC [Erwinia
           amylovora ATCC BAA-2158]
          Length = 677

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 92/272 (33%), Gaps = 20/272 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  +++  ++ V +   I ++ R  L ++      T        S  +  G  FVS  
Sbjct: 297 QLIAKIDVP-QNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-- 353

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                    D   F   + ALE       +A P++  +  Q A             ++  
Sbjct: 354 ---------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYI--TATGE 402

Query: 303 GATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTV 360
               +     G  L  TP  V + G   +++  ++ +  +  N     +   R    T  
Sbjct: 403 RVADIQPVTAGTSLQVTPRAVGNEGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQA 462

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +     +VL G   ++       IPLL  IP LG LF + R    + +     TP L+ 
Sbjct: 463 LISENRALVLGGFHVEESADRDRRIPLLGDIPWLGQLFSSKRHEISQRQRLFILTPRLIG 522

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
                      D+     DA      RV + +
Sbjct: 523 DQTDPTRYVTADNRQQLSDA----MGRVERRH 550


>gi|292487037|ref|YP_003529907.1| type III secretion system outer membrane pore HrcC [Erwinia
           amylovora CFBP1430]
 gi|292900578|ref|YP_003539947.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|1336093|gb|AAB49179.1| HrcC [Erwinia amylovora]
 gi|291200426|emb|CBJ47554.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552454|emb|CBA19499.1| Type III secretion system outer membrane pore HrcC [Erwinia
           amylovora CFBP1430]
          Length = 676

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 92/272 (33%), Gaps = 20/272 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  +++  ++ V +   I ++ R  L ++      T        S  +  G  FVS  
Sbjct: 296 QLIAKIDVP-QNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-- 352

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                    D   F   + ALE       +A P++  +  Q A             ++  
Sbjct: 353 ---------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYI--TATGE 401

Query: 303 GATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTV 360
               +     G  L  TP  V + G   +++  ++ +  +  N     +   R    T  
Sbjct: 402 RVADIQPVTAGTSLQVTPRAVGNEGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQA 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +     +VL G   ++       IPLL  IP LG LF + R    + +     TP L+ 
Sbjct: 462 LISENRALVLGGFHVEESADRDRRIPLLGDIPWLGQLFSSKRHEISQRQRLFILTPRLIG 521

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
                      D+     DA      RV + +
Sbjct: 522 DQTDPTRYVTADNRQQLSDA----MGRVERRH 549


>gi|325280193|ref|YP_004252735.1| type II and III secretion system protein [Odoribacter splanchnicus
           DSM 20712]
 gi|324312002|gb|ADY32555.1| type II and III secretion system protein [Odoribacter splanchnicus
           DSM 20712]
          Length = 628

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 103/242 (42%), Gaps = 18/242 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGV 250
           +T++V I + ++  L++ G    +       +   +        +   +     F+  G 
Sbjct: 386 ITIEVLIVDSKKSSLREAGITAGLGEKPVKTAGRLSPGVDFTLSAASVNRLIHSFNGFGS 445

Query: 251 LD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT- 305
           ++      +F   L ALE A  +   + P L+ ++G  AS  SG    YK V ++   T 
Sbjct: 446 VNLGKVTPNFYLTLKALEEAGTLELRSTPKLSTLNGHEASLKSGETRYYKEVQNNIMGTQ 505

Query: 306 ------SVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                 S T    +  + L   P V S G+I L I+ E SE          P    R   
Sbjct: 506 NPIQSESYTWKSTEADLSLKIVPYVSSDGKITLTIEIEQSEFTAREEKDAPPGTATRSFK 565

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           + + + +   ++L G+ ++  ++   G+PL+++IP+L  LF  S  N+ + ++ I   P 
Sbjct: 566 SRIRVDNEDMVLLGGIDRNTREKGSSGLPLIARIPVLKWLFGVSTDNKVDEKLSIFIKPT 625

Query: 418 LV 419
           ++
Sbjct: 626 VI 627


>gi|297567918|ref|YP_003686888.1| type II and III secretion system protein [Meiothermus silvanus DSM
           9946]
 gi|296852367|gb|ADH65380.1| type II and III secretion system protein [Meiothermus silvanus DSM
           9946]
          Length = 670

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 23/264 (8%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
            Q A ++ ++++  L+     QV L+V + ++      +I         ++    S  AD
Sbjct: 375 PQAAVAAIERLVGDLDRPIP-QVDLQVRVEQLSSSNGDEI----GAALEAALGPLSLKAD 429

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            G      G +    G+L        L AL+ A   R+L +   T  SG+S +  SGG  
Sbjct: 430 PGSGQYGLGLEVGKTGLL---KLNAALKALQSAGKGRSLIDSRFTVSSGESVNLLSGGSL 486

Query: 294 LYK-------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-SEPVIGVNA 345
           L           S  T  T +   ++G+ L  TPTV+   +I L +   + S P +G N 
Sbjct: 487 LIPLTSTGTGGSSGGTSTTGLQNVEFGLELKLTPTVIPGDKIQLGVNINLGSAPTVGPNN 546

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +     ++  + V L SG + VL G++  + ++ + GIP+L  +P++G LF  +  + 
Sbjct: 547 STLVP--KQQLTSNVLLSSGNSAVLGGVISVEEKESRSGIPVLMDLPLIGGLFSQTVKSS 604

Query: 406 EETEIFIAAT-----PFLVKPVAM 424
            +T + I  T     P  VKP +M
Sbjct: 605 SQTHLLIVVTAVSRLPEAVKPASM 628


>gi|83747847|ref|ZP_00944880.1| HrcC [Ralstonia solanacearum UW551]
 gi|207739230|ref|YP_002257623.1| hrp protein hrcc [Ralstonia solanacearum IPO1609]
 gi|83725494|gb|EAP72639.1| HrcC [Ralstonia solanacearum UW551]
 gi|206592603|emb|CAQ59509.1| hrp conserved protein hrcc [Ralstonia solanacearum IPO1609]
          Length = 567

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 25/246 (10%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240
           +  +I ++    L+Q+G    +  S     +G   +   +  G   S             
Sbjct: 325 ISASIIDITETALEQLGVDWRLHNSRLDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 384

Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              GG  S             + AL++    R  A P +  +    A   +         
Sbjct: 385 TPAGGVLSAVIGGGSRYLMARISALQQTNQARVTASPKVATLDNTEAVMDNRQNFYVPVA 444

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                +  +     GV L   P V+  G   RI + +  E    +     G++P     +
Sbjct: 445 GYQ--SADLYAISAGVSLRVLPMVVMDGGTVRIRMNVHIE-DGQITSQQVGNLPVTSQSE 501

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            DT   +  G ++++AG   D   +  + IP LSKIP++GALFR  +   +  +     T
Sbjct: 502 IDTQALINEGESLLIAGYSVDQQAKTVDAIPGLSKIPLVGALFRTDQTTGQRFQRMFLVT 561

Query: 416 PFLVKP 421
           P ++ P
Sbjct: 562 PRVITP 567


>gi|206563896|ref|YP_002234659.1| type III secretion system protein [Burkholderia cenocepacia J2315]
 gi|18092668|gb|AAL59397.1| BcscC [Burkholderia cenocepacia]
 gi|28394249|gb|AAO31724.1| BcscC [Burkholderia cenocepacia]
 gi|198039936|emb|CAR55914.1| type III secretion system protein [Burkholderia cenocepacia J2315]
          Length = 681

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 97/269 (36%), Gaps = 43/269 (15%)

Query: 196 VTLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPSKSFAADFGG 236
           V + VTI ++  D L  +G                        T  +   +       G 
Sbjct: 340 VEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQYNGAGNPPLTFGIGT 399

Query: 237 KFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAEPTLTAISGQSASFT 288
               + G F   G+    S    L        +AL +    +  ++P + A+    A   
Sbjct: 400 SETGQTGAFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILE 459

Query: 289 SGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS------------PGRIGLRIQTE 335
           +  Q   +       +  SVTT   G  +  TP ++             P  + + I  +
Sbjct: 460 NLTQFYVQVPGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQ 516

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
               V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP++G
Sbjct: 517 DGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIG 576

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424
            LF+ +  +    E F   TP +V   +M
Sbjct: 577 NLFKYTDKSGNHMERFYLLTPRVVTSASM 605


>gi|110639568|ref|YP_679778.1| type II general secretion pathway (GSP) D protein [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110282249|gb|ABG60435.1| type II general secretion pathway (GSP) D protein [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 656

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 98/246 (39%), Gaps = 21/246 (8%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----------FAADFGGKFVSEGG 243
             V ++V I EV ++ + + G +  +  S +    S           +      F++  G
Sbjct: 411 PMVMIEVIIMEVLKNRMVKTGIKAGLNDSLATTQTSGTFLPGLDVKLSTSTINDFINGLG 470

Query: 244 DFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             S+  +     SF   L ALE    +   + P L+ ++G  A+ + G    Y+  + +T
Sbjct: 471 IGSITNLGSVTPSFYMTLSALETNNNVEIKSMPKLSTLNGHDANMSIGQTVYYEVQTQNT 530

Query: 303 -------GATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
                    T+V          L   P V    ++ L I+   +      NA   P+   
Sbjct: 531 LGSLTTNTITTVQYQSVQANQTLSIKPLVSGDDQVTLTIEVNQTSFAKS-NAAGPPNTTT 589

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            +  + + + +   IVL GL K       EG P+LS+IP++  LF +   ++ ++ + + 
Sbjct: 590 SQFKSIIRVRNEEMIVLGGLEKISKSIDTEGTPILSRIPVIKLLFSSKTKSKSKSILVLF 649

Query: 414 ATPFLV 419
             P ++
Sbjct: 650 IKPIII 655


>gi|237737584|ref|ZP_04568065.1| general secretion pathway protein D [Fusobacterium mortiferum ATCC
           9817]
 gi|229419464|gb|EEO34511.1| general secretion pathway protein D [Fusobacterium mortiferum ATCC
           9817]
          Length = 551

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 112/281 (39%), Gaps = 30/281 (10%)

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGED------QVTLKVTIAEVRRDILKQIGFQH--SIT 220
           S   +N    S  + ++N      ++      Q+ +   I +V  ++ + +GF      +
Sbjct: 246 SLPKKNILVLSGKENIINSSKSLIQELDKDVEQIRIDAQILDVTDNLFETLGFNWIYDNS 305

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV-------LHALERATAIRTLA 273
           G++ G +    +  G   +S  G      +     F +        ++ LE    +   +
Sbjct: 306 GNTEGNNSWSMSLLGNSSISGIGSIYSSSIAISKQFNSGNDILNLGINLLESTQDLVVSS 365

Query: 274 EPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            P++  + G+  SF    + +          ++   T+    + G++L  TPT+   G +
Sbjct: 366 RPSILVLDGEEGSFKVAEEVIVGEQREEDEDTNKVITTPIFREAGIILKATPTIRKDGWV 425

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRV----------RKADTTVELPSGGTIVLAGLLKDDI 378
            L++  E+S   + VN  +                R  +TT+++ +G TI + GL K  +
Sbjct: 426 ILKVLIEISNFKLKVNKDESEESGTYNSEGGSKVGRSIETTIKIKNGETIFIGGLKKATV 485

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             L   IP    +P++   F+N   + E ++I++     +V
Sbjct: 486 HNLDSKIPYFGTLPMINFFFKNQNISHEISDIYVKMKVNIV 526


>gi|238755999|ref|ZP_04617324.1| Possible type III secretion system protein [Yersinia ruckeri ATCC
           29473]
 gi|238705788|gb|EEP98180.1| Possible type III secretion system protein [Yersinia ruckeri ATCC
           29473]
          Length = 558

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 85/241 (35%), Gaps = 21/241 (8%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           +   QV L + I ++ +  L ++G + SI    +G                G  F+   +
Sbjct: 297 SSRRQVELSLWIIDISKKKLDEVGVRWSIGDLKAGGG--------------GIAFNQSTL 342

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            +   F   + A+ R    + ++ P +       A F +      +          +   
Sbjct: 343 SNSAKFLARVDAISRTGDAQIVSRPIVLTQENIPALFDNNSSFYARLEGERV--AKLEQV 400

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSG 365
            YG ++   P +    ++ + +  E   P    +      G +P        T   +   
Sbjct: 401 TYGTMVSVLPRISQGDQVEMDVNIEDGSPGRAGSNDVDQIGGLPIVNRTNISTVARIAKD 460

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            ++++ G  +D +++  E IPLL  IP LG LF     N+++        P L+      
Sbjct: 461 SSLLIGGYTRDQLEESDEKIPLLGSIPYLGRLFSYRSSNQQKMIRVFLIQPRLLNESESW 520

Query: 426 D 426
           D
Sbjct: 521 D 521


>gi|289765568|ref|ZP_06524946.1| general secretion pathway protein D [Fusobacterium sp. D11]
 gi|289717123|gb|EFD81135.1| general secretion pathway protein D [Fusobacterium sp. D11]
          Length = 423

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 21/248 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              QV +   I ++  ++ +++GF         S    S  A    K    G   +V  V
Sbjct: 174 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIV 233

Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
               +      T ++ LE    +   + PTL   SG+   F    + +    +       
Sbjct: 234 RQFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 293

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353
             +     + G+++   P +     I L I  E+S+     N  ++              
Sbjct: 294 RYSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 353

Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E +++
Sbjct: 354 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 413

Query: 411 FIAATPFL 418
           +I     +
Sbjct: 414 YIKLKVEI 421


>gi|149925789|ref|ZP_01914053.1| putative Type II secretory pathway component PulD [Limnobacter sp.
           MED105]
 gi|149825906|gb|EDM85114.1| putative Type II secretory pathway component PulD [Limnobacter sp.
           MED105]
          Length = 646

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 92/268 (34%), Gaps = 27/268 (10%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +  +    + Q+ ++  I E+  +   + G   ++    +G +   A   G    +    
Sbjct: 291 LTQIQRRVDRQIVIEAVITEISLNDRYERGIDWNVL-RQNGITAGLAVQ-GLNLGNPALT 348

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F+             L  LE       L+ P +  ++ Q+A        +Y T    T A
Sbjct: 349 FNALRNTGNTDTSVALRLLEEFGKTEVLSSPRVVTMNQQAAVLKVIDNRVYFTTDVQTSA 408

Query: 305 ------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----- 347
                       T V T   G ++  TP +     I LR++  +S  V  V   +     
Sbjct: 409 PTQNSPAFSTFTTQVQTVPVGFLMTVTPQIADNNAIQLRVRPTLSRIVGFVQDPNPALQQ 468

Query: 348 ------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                 +P  + R+ ++ + L SG   +L GL + +   L  GIP   +   +  + ++ 
Sbjct: 469 LNIISRVPEVQTRELESILRLKSGEMALLGGLRQKENSSLSRGIPGAPE--SVDLITQSK 526

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSR 429
                  E+ +     +++      L  
Sbjct: 527 NRGESHIELVVLLKATVLESATANQLQT 554


>gi|322646886|gb|EFY43389.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|323203179|gb|EFZ88208.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
          Length = 456

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 99/260 (38%), Gaps = 25/260 (9%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++  L++A +  V L + I ++ +  L+++G   S             +   G  +    
Sbjct: 187 LVKALDVA-KRHVELSLWIVDLNKSDLERLGTSWS------------GSITIGDKLGVSL 233

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           + +    LD   F   ++ALE       ++ P L       A F +      K +     
Sbjct: 234 NQASISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNV 293

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADT 358
           A    T  YG ++   P   + G+I + +  E             +   +P        T
Sbjct: 294 ALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLIST 351

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +P G ++++ G  +D      + IP L K+P++G+LFR S  N+           F+
Sbjct: 352 IARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN-----VVRVFM 406

Query: 419 VKPVAMRDLSRPDDHYSVED 438
           ++P  + D   PD   SV +
Sbjct: 407 IEPKEIVDPLTPDASESVNN 426


>gi|218440223|ref|YP_002378552.1| type II and III secretion system protein [Cyanothece sp. PCC 7424]
 gi|218172951|gb|ACK71684.1| type II and III secretion system protein [Cyanothece sp. PCC 7424]
          Length = 734

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 14/180 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----H 310
           F   L A   +   + L +PTL    GQ A+     + +    +     + V T      
Sbjct: 525 FLLTLEAQITSGNAKILTDPTLVVQEGQQATVKLTQKVVESVNTQVDPLSGVRTTTPVLQ 584

Query: 311 DYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGV-------NAGDMPSYRVRKADT-TVE 361
           D G+ L      +   G + L +   ++ P               +     R+  +  + 
Sbjct: 585 DAGLTLTVEVDRIDDNGFVSLFVSPTIAAPGASQEFESGDGTTNQLTLLTRRELTSGLIR 644

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G T++L+G++ +  Q     +P+L  IPILGALFR +  +   +E+ +  TP ++  
Sbjct: 645 MRDGQTLILSGIISESEQTTVSKVPILGDIPILGALFRRTDNSGSRSEVIVLLTPKIIDD 704


>gi|167615514|ref|ZP_02384149.1| type II/III secretion system protein [Burkholderia thailandensis
           Bt4]
          Length = 309

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 13/226 (5%)

Query: 205 VRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETV 259
           V       +  Q+S    +  P   S S A +      +     S+  VL          
Sbjct: 88  VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 147

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318
           + ALE +   RT A P +T +    A   +  Q   +    +S    S++T   GV L  
Sbjct: 148 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 204

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P V+  G   +I L ++  V   +      ++P     + +T   +  G  +++AG   
Sbjct: 205 LPMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKV 263

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           D     + G+P+LSK+P+LGALFR++      +E     TP +++P
Sbjct: 264 DARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 309


>gi|167566263|ref|ZP_02359179.1| type II/III secretion system protein [Burkholderia oklahomensis
           EO147]
          Length = 311

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 33/241 (13%)

Query: 210 LKQIGFQH-------------SITGSSSGPSKSFAADFGGKFVSEGGD----------FS 246
           LKQ+G                 +T  +S  + S    FG   +S  GD           S
Sbjct: 75  LKQLGVDWRAHNSHIDLQTGTGLTAQNSYANGSLNPTFGSISLSGNGDSVGVPASPLGLS 134

Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTG 303
           +  VL          ++ALE +   RT A P +T +    A   +  Q   +    +S  
Sbjct: 135 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 194

Query: 304 ATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             S++T   GV L   P V+  G   +I L ++  V   +      ++P     + +T  
Sbjct: 195 LYSIST---GVSLRVLPMVVEEGGHTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQA 250

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G  +++AG   D       G+P+LSK+P++GALFR++      TE     TP +++
Sbjct: 251 FIEQGQALLIAGYKVDSRSSTLSGVPVLSKLPLVGALFRSTDKQDSHTERLFLVTPRVIE 310

Query: 421 P 421
           P
Sbjct: 311 P 311


>gi|67639552|ref|ZP_00438400.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei GB8 horse 4]
 gi|238520110|gb|EEP83573.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei GB8 horse 4]
          Length = 380

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 175 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 234

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 235 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGCTQIKLD 291

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 292 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 350

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 351 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 380


>gi|170698153|ref|ZP_02889232.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
 gi|170136918|gb|EDT05167.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
          Length = 619

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 109/274 (39%), Gaps = 17/274 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G+  + +   RAV   +T                 +++ L+I+ + Q+ L + I ++++
Sbjct: 324 TGIAVSAETDVRAVAYPDTNSIVLTGPLDKVQDMTSLIHSLDIS-KRQIQLSLWIIDIKK 382

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L Q+G        S+  S SF           G D S    LD   F   + AL++  
Sbjct: 383 SCLDQLGVNWQGVFGSNRISGSF----------NGADNSTT--LDGPKFLVSVMALQQKG 430

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               ++ P L       A F +      K +     A S+    YG +++  P +   G 
Sbjct: 431 DATIVSRPVLLTQENMPAVFDNNQTFYAKLIGER--AVSLEHVTYGTMINVLPRLTDNGS 488

Query: 328 -IGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            + +++  E        +A   +P     + DT   +P   ++++ G  +DD ++ +  I
Sbjct: 489 EVEMQVDVEDGNATDTNDAASPLPLVDRTEIDTVARVPREKSLLIGGNTRDDARRHRYRI 548

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P L+ +P++G LFR    + ++        P ++
Sbjct: 549 PGLASLPLIGGLFRWRTESHDQVVRVFLIQPKVL 582


>gi|259909699|ref|YP_002650055.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcC protein [Erwinia pyrifoliae Ep1/96]
 gi|224965321|emb|CAX56853.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcC protein [Erwinia pyrifoliae Ep1/96]
 gi|283479785|emb|CAY75701.1| Type III secretion system outer membrane pore HrcC [Erwinia
           pyrifoliae DSM 12163]
          Length = 676

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 92/272 (33%), Gaps = 20/272 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  +++  ++ V +   I ++ R  L ++      T        S  +  G  FVS  
Sbjct: 296 QLIAKIDVP-QNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-- 352

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                    D   F   + ALE       +A P++  +  Q A             ++  
Sbjct: 353 ---------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYI--TATGE 401

Query: 303 GATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTV 360
               +     G  L  TP  V + G   +++  ++ +  +  N     +   R    T  
Sbjct: 402 RVADIQPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQA 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +     +VL G   ++       IPLL  IP +G LF + R    + +     TP L+ 
Sbjct: 462 LISENRALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIG 521

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
                      D+     DA      RV + +
Sbjct: 522 DQTDPTRYVTADNRQQLSDA----MGRVERRH 549


>gi|34762860|ref|ZP_00143844.1| General secretion pathway protein D [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887468|gb|EAA24554.1| General secretion pathway protein D [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 423

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 91/248 (36%), Gaps = 21/248 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV +   I ++  ++ +++GF      +     ++             G  S   ++
Sbjct: 174 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGLNGVGSTVNIV 233

Query: 252 DRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
            +F          ++ LE    +   + PTL   SG+   F    + +    +       
Sbjct: 234 RQFHNKSDVLSVGINLLEATNDLVVSSVPTLLIASGEEGEFKVTEEVVVGIKTHREDKKD 293

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353
             +     + G+++   P +     I L I  E+S+     N  ++              
Sbjct: 294 RYSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 353

Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E +++
Sbjct: 354 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 413

Query: 411 FIAATPFL 418
           +I     +
Sbjct: 414 YIKLKVEI 421


>gi|266635497|gb|ABA39798.2| HrcC [Erwinia pyrifoliae]
          Length = 676

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 92/272 (33%), Gaps = 20/272 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  +++  ++ V +   I ++ R  L ++      T        S  +  G  FVS  
Sbjct: 296 QLIAKIDVP-QNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-- 352

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                    D   F   + ALE       +A P++  +  Q A             ++  
Sbjct: 353 ---------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYI--TATGE 401

Query: 303 GATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTV 360
               +     G  L  TP  V + G   +++  ++ +  +  N     +   R    T  
Sbjct: 402 RVADIQPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQA 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +     +VL G   ++       IPLL  IP +G LF + R    + +     TP L+ 
Sbjct: 462 LISENRALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIG 521

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
                      D+     DA      RV + +
Sbjct: 522 DQTDPTRYVTADNRQQLSDA----MGRVERRH 549


>gi|289804850|ref|ZP_06535479.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 230

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 10/229 (4%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            + + V I +V    + Q+G       S  G   +F           G       + D  
Sbjct: 1   MIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTS 56

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +F   L+ALE+++    L++P++  ++   A         + T         + +   G 
Sbjct: 57  NFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTKLQGEKVAKLESITTGS 114

Query: 315 VLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVL 370
           +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G +++L
Sbjct: 115 LLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLL 174

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G  +      +  IPLL  IP++G LFRN                 +V
Sbjct: 175 GGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVV 223


>gi|254412671|ref|ZP_05026444.1| Bacterial type II and III secretion system protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180406|gb|EDX75397.1| Bacterial type II and III secretion system protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 979

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 86/214 (40%), Gaps = 18/214 (8%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307
            F   L A   +   + L +PT+    GQ+A+     + +    S +       T   + 
Sbjct: 767 DFLAQLQAQITSGNAKILTDPTIVVQEGQTATVNLTQEVVGNIRSETESADGLTTRTVTA 826

Query: 308 TTHDYGVVLH-FTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADT-T 359
              + G++L      +   G + L +  EV+         IG +   +     R+  +  
Sbjct: 827 EIREAGLILELIVDRIDDNGFVTLAVNPEVTSIGSVQNLSIGDDTNQIALLNTRELTSGQ 886

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T++L+G++++  +     +P+L  +PILGALFR++    +  E+ +  TP ++
Sbjct: 887 IRLRDGQTLILSGIIQESDRTTVRKVPILGDLPILGALFRSTERQNQRQEVIVLLTPQIL 946

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
                        +Y+   +A+     R     G
Sbjct: 947 DDSERGAF---GYNYTPGREAQEVLQRRGFPTQG 977


>gi|307149984|ref|YP_003885368.1| type II and III secretion system protein [Cyanothece sp. PCC 7822]
 gi|306980212|gb|ADN12093.1| type II and III secretion system protein [Cyanothece sp. PCC 7822]
          Length = 728

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 14/180 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----H 310
           F   L A   +   + L +PTL    GQ A+     + +    +     + V T      
Sbjct: 519 FLATLQASITSGNAKILTDPTLVVQEGQQATVKLTQKVVESVNTQVDPLSGVRTTTPVLQ 578

Query: 311 DYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGVN-------AGDMPSYRVRKADT-TVE 361
           D G+ L      +   G + L +   ++ P               +     R+  +  + 
Sbjct: 579 DAGLTLTVEVDRIDDNGFVSLFVSPTIAAPGATQTFDSGNGSNNTLTLLSRREMTSGLIR 638

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G T++L+G++ +  +     +P+L  IPILGALFR +  N   +E+ +  TP ++  
Sbjct: 639 MRDGQTLILSGIISETERTTVTKVPILGDIPILGALFRRTDNNGNRSEVIVLLTPKIIDD 698


>gi|310766437|gb|ADP11387.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcC protein [Erwinia sp. Ejp617]
          Length = 676

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 92/272 (33%), Gaps = 20/272 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  +++  ++ V +   I ++ R  L ++      T        S  +  G  FVS  
Sbjct: 296 QLIAKIDVP-QNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-- 352

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                    D   F   + ALE       +A P++  +  Q A             ++  
Sbjct: 353 ---------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYI--TATGE 401

Query: 303 GATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTV 360
               +     G  L  TP  V + G   +++  ++ +  +  N     +   R    T  
Sbjct: 402 RVADIQPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQA 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +     +VL G   ++       IPLL  IP +G LF + R    + +     TP L+ 
Sbjct: 462 LISENRALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIG 521

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
                      D+     DA      RV + +
Sbjct: 522 DQTDPTRYVTADNRQQLSDA----MGRVERRH 549


>gi|3228547|gb|AAC34756.1| HrcC [Pseudomonas syringae pv. tomato]
          Length = 700

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 89/246 (36%), Gaps = 15/246 (6%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  +K++  L++     + +   I ++  + L ++        SS    +  AA   G 
Sbjct: 303 KAMYQKLVKELDVPRNL-IEIDAVILDIDPNELAEL--------SSRLEFQCPAASEVGA 353

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + +GG  S   + +   F   LHALE   +   +A P++  +  Q A            
Sbjct: 354 NLFDGGTSSTLFLQNASKFSAELHALEGNGSASVIANPSILTLENQPAVIDLSRTEYLTP 413

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
            S    A  +     G  L   P  L      ++ + +  E  +  +       PS R  
Sbjct: 414 TSER--AADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRG 471

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       IPLL  IP +G  LF++      + E    
Sbjct: 472 NVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFI 531

Query: 414 ATPFLV 419
            TP L+
Sbjct: 532 LTPRLI 537


>gi|170698370|ref|ZP_02889444.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
 gi|170136709|gb|EDT04963.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
          Length = 589

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 6/222 (2%)

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
            +V+          ++ T S +    + A +        G   +             + A
Sbjct: 371 IDVQTGTGTLGQSTYNGTLSQNFGQTALAGNVLAAATPVGASVAAVLGDAGRYLMARISA 430

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTP- 320
           L+   A +  A P +  ++   A   +  Q        ++G   SV+T   G+ L   P 
Sbjct: 431 LQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRVLPM 487

Query: 321 TVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
            V   GR  +++   +    +      ++P  +    +T   +  G  +++AG   D   
Sbjct: 488 VVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFIEEGQALLIAGYRADSAT 547

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
               G+P LSKIP++GALFR     +   E     +P ++ P
Sbjct: 548 MGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 589


>gi|330882763|gb|EGH16912.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 215

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 10/207 (4%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
           ++  G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FG+  GQ ++I
Sbjct: 19  NIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGQAAGQTSLI 78

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +  DG++   L + +    A +   L+     S  R+      V+  G V+ + ++   
Sbjct: 79  ALDSDGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDL 138

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
             L    LS  G+N       +  +N    AG  QV ++V  AEV R  L + G   +  
Sbjct: 139 NAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNAL 188

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSV 247
            ++   S            + GG  +V
Sbjct: 189 FNNGTFSFGLLTGGALAADAAGGASNV 215


>gi|153848715|ref|ZP_01993991.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
 gi|149744675|gb|EDM56143.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
          Length = 132

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 67/132 (50%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
           +++       G+ +S+  ++   L +    + V + DP   D+VV     ++L GK +G 
Sbjct: 1   MSVHAATAQSGRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNELFLIGKKLGT 60

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            NV +    G+ +   ++ +  D+  L+  L +F+ D +I V    + VVL G+V + Q+
Sbjct: 61  TNVSVWDSRGRLIEQFNVEVTHDLNTLKSKLFQFLPDESIEVHSAQEKVVLRGLVSSQQN 120

Query: 157 SQRAVELSETFL 168
              AV+++ETF 
Sbjct: 121 MDIAVKIAETFA 132


>gi|170737787|ref|YP_001779047.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia cenocepacia MC0-3]
 gi|169819975|gb|ACA94557.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia cenocepacia MC0-3]
          Length = 681

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 97/269 (36%), Gaps = 43/269 (15%)

Query: 196 VTLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPSKSFAADFGG 236
           V + VTI ++  D L  +G                        T  +   +       G 
Sbjct: 340 VEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQYNGVGNPPLTFGIGT 399

Query: 237 KFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAEPTLTAISGQSASFT 288
               + G F   G+    S    L        +AL +    +  ++P + A+    A   
Sbjct: 400 SETGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILE 459

Query: 289 SGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS------------PGRIGLRIQTE 335
           +  Q   +       +  SVTT   G  +  TP ++             P  + + I  +
Sbjct: 460 NLTQFYVQVPGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQ 516

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
               V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP++G
Sbjct: 517 DGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNKSGVPWLSDIPLIG 576

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424
            LF+ +  +    E F   TP +V   +M
Sbjct: 577 NLFKYTDKSGNHMERFYLLTPRVVTNASM 605


>gi|167907227|ref|ZP_02494432.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei NCTC 13177]
          Length = 327

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 8/209 (3%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 122 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 181

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRI 332
            +T +    A   +  Q   +    +  +  + +   GV L   P V+  G   +I L +
Sbjct: 182 KVTTLDNVEAVMDNKKQFFVRVAGYT--SADLYSISTGVSLRVLPMVVDEGGRTQIKLDV 239

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           +  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+P
Sbjct: 240 RI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKLP 298

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKP 421
           ++GALFR++      +E     TP +++P
Sbjct: 299 LVGALFRSTDKQNSHSERLFLVTPRVIEP 327


>gi|254508151|ref|ZP_05120276.1| fimbrial assembly protein [Vibrio parahaemolyticus 16]
 gi|219548873|gb|EED25873.1| fimbrial assembly protein [Vibrio parahaemolyticus 16]
          Length = 553

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 98/288 (34%), Gaps = 76/288 (26%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGGKFV 239
           + +++ L+I    QV ++  I  V    L ++G +   T ++   +   S  ++     +
Sbjct: 290 RDIIDTLDIP-VKQVQIEARIVSVNEGNLDELGVRWGFTSTNGNNTVGGSIESNLFQAGL 348

Query: 240 SEGGDFSVKGVLDRFSFETVLHA----------------------LERATAIRTLAEPTL 277
            EG +  V   L+     T   A                      L+R +    ++ P L
Sbjct: 349 LEGDNLPVDDFLNVNLGATSATASSIAFQVAKLGSDLLLDLELSALQRESKAEVISSPRL 408

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + + A    G +  Y   SSS+GAT+VT     + L  TP +    R+ L +     
Sbjct: 409 ITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVTPQITPDNRLVLDLNVTQD 467

Query: 338 EP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            P  V+    G+  +   ++  T V + +G T+VL G+                      
Sbjct: 468 RPGDVVKTGTGEAVAINTQRIGTQVLVENGETVVLGGI---------------------- 505

Query: 396 ALF------------------------RNSRFNREETEIFIAATPFLV 419
             F                        R S     ++E+ I  TP +V
Sbjct: 506 --FQHSVTDTVDKVPLLGDLPLLGALFRRSYQQMGKSELLIFVTPKVV 551


>gi|167724326|ref|ZP_02407562.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei DM98]
          Length = 308

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 103 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 162

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 163 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 219

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 220 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 278

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 279 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 308


>gi|323978511|gb|EGB73593.1| YscC/HrcC family protein type III secretion outer membrane pore
           [Escherichia coli TW10509]
          Length = 567

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +     +  V+D T     +   + +       G
Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204

Query: 96  QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147
            A V   L+ ++ KQ   +++L E         + R         D +++VE +  T   
Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T      A   + + L +   +Q      +K++  L+I  +  + L + I ++ +
Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L+Q+G   S        +    +     F + G        LD   F   + AL +  
Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P +       A F +      K V   T    +    YG ++   P   S  +
Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFASRNQ 425

Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +  E    +     N  D+P        T   +P G ++++ G  +D        I
Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+L  IP +G LF     N            FL++P  + +
Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521


>gi|167820470|ref|ZP_02452150.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 91]
 gi|167828842|ref|ZP_02460313.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 9]
          Length = 315

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 110 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 169

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 170 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 226

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 227 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 285

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 286 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 315


>gi|167915591|ref|ZP_02502682.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 112]
          Length = 322

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 117 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 176

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 177 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 233

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 234 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 292

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 293 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 322


>gi|78186891|ref|YP_374934.1| Type II secretory pathway component PulD-like [Chlorobium luteolum
           DSM 273]
 gi|78166793|gb|ABB23891.1| Type II secretory pathway component PulD-like protein [Chlorobium
           luteolum DSM 273]
          Length = 588

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 102/250 (40%), Gaps = 20/250 (8%)

Query: 189 NIAGEDQVTLKVTIA----EVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKF----- 238
           N+   D V +   I     E+       +    S+  G+SS P+ SF   +   +     
Sbjct: 253 NLPMPDMVIIDAVILRNEDEITHSKGVNLLNGLSLQFGNSSNPAISFNRAYSSSWTHNPD 312

Query: 239 -----VSEGGDFSVKGVLDRFSFETVLHALE-RATAIRTLAEPTLTAISGQSASFTSGGQ 292
                +++    ++ G++   +    ++     ++ I  +A PTLT +    + F SG Q
Sbjct: 313 GTDDTIAKSITNTITGIISVPALTYSMNIFNMGSSKIDVIARPTLTGMLNIDSEFFSGNQ 372

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDM 348
                  S+  +      + GV +H  P  ++  ++ L ++   S         +    M
Sbjct: 373 IDAAVAGSADSSPISINKEIGVTMHVRPNEITRNKVKLHVEVSRSFLDTTDKDKITYQYM 432

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            +    K  T V++  G T++L+GL + +    ++G+P+L  IP+L  LF        + 
Sbjct: 433 VTTSNTKVTTDVDIAFGETMILSGLYEREAVDTRDGVPILQDIPLLQYLFSKKTERLFQR 492

Query: 409 EIFIAATPFL 418
            + I  TP++
Sbjct: 493 SVIILLTPYI 502


>gi|227357599|ref|ZP_03841952.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
 gi|227162309|gb|EEI47313.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
          Length = 571

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 95/277 (34%), Gaps = 23/277 (8%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             ++   +    +++ L+   + QV + + I ++ +     +G     +  S   +  F 
Sbjct: 298 KTSREGLALVSSLISQLDKP-KRQVEMSLWIIDISKSKADSLGVNWQGSYGSGKNTFFF- 355

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                       + +    +  FSF + + AL      + ++ P L       A F +  
Sbjct: 356 ------------NTASLSAVSGFSFLSKIKALSEEGEAKMVSRPILLTQENTPAIFDNNT 403

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTV-LSPGRIGLRIQTEVSEPVIGVNAG---- 346
               +       +   TT  +G ++   P +  +   I + I  E        +      
Sbjct: 404 TFYTQIKGERVASLESTT--FGTMISVLPRISNTNQEIEMIINLEDGAEKKSDDEDREEG 461

Query: 347 --DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P        T   +  GG++++ G  ++D  + +  IP LS IP++G  F     N
Sbjct: 462 IEKLPVINRTNISTVARVSEGGSLLIGGYTREDNIKAENRIPFLSAIPLVGRAFSYQSDN 521

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
            ++        P L+       L    +H  +  D K
Sbjct: 522 NKKMVRIFMLQPRLLDKTDTHGLDSLTEHPFLPMDKK 558


>gi|294507285|ref|YP_003571343.1| general secretion pathway protein D [Precursor] [Salinibacter ruber
           M8]
 gi|294343613|emb|CBH24391.1| Probable general secretion pathway protein D [Precursor]
           [Salinibacter ruber M8]
          Length = 473

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 19/213 (8%)

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
           +++A      F S          +    F   L+ +E+    RT+A P +T  SG+    
Sbjct: 213 QNYAIQTENLFESVDNILQAPDQISLSQFRRFLNLVEQDNVGRTVANPQVTVQSGEQGEI 272

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-----------GRIGLRIQTEV 336
             G     +T +   G T       G+++  TPT+LS              I L +  E 
Sbjct: 273 QIGQDVPIQT-TDFAGNTVTEFFSTGIIIDVTPTLLSQPVADTSGAPVLDFIHLNVDVED 331

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP---- 392
           S       +G  P     +A T + L       + GL+       + G+P+L  +P    
Sbjct: 332 SN---SQPSGSGPIINRNQASTQILLLDNEATAIGGLISTQKTTRRSGVPILKDLPGWVF 388

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            L  +F +   N  + E+ I     +V P+  R
Sbjct: 389 GLRYIFGSETTNVTKQELLIVLRAEIVDPLRAR 421


>gi|218706369|ref|YP_002413888.1| protein invG [Escherichia coli UMN026]
 gi|293406360|ref|ZP_06650286.1| invG [Escherichia coli FVEC1412]
 gi|293412219|ref|ZP_06654942.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B354]
 gi|298382096|ref|ZP_06991693.1| type III secretion protein SctC [Escherichia coli FVEC1302]
 gi|300896248|ref|ZP_07114795.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 198-1]
 gi|331674348|ref|ZP_08375108.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli TA280]
 gi|62085071|gb|AAX62936.1| putative type III secretion apparatus protein [Escherichia coli]
 gi|218433466|emb|CAR14368.1| Protein invG precursor [Escherichia coli UMN026]
 gi|284922811|emb|CBG35899.1| type III secretion system protein [Escherichia coli 042]
 gi|291426366|gb|EFE99398.1| invG [Escherichia coli FVEC1412]
 gi|291468990|gb|EFF11481.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B354]
 gi|298277236|gb|EFI18752.1| type III secretion protein SctC [Escherichia coli FVEC1302]
 gi|300359869|gb|EFJ75739.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 198-1]
 gi|331068442|gb|EGI39837.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli TA280]
          Length = 567

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +     +  V+D T     +   + +       G
Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204

Query: 96  QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147
            A V   L+ ++ KQ   +++L E         + R         D +++VE +  T   
Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T      A   + + L +   +Q      +K++  L+I  +  + L + I ++ +
Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L+Q+G   S        +    +     F + G        LD   F   + AL +  
Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P +       A F +      K V   T    +    YG ++   P   S  +
Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFASRNQ 425

Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +  E    +     N  D+P        T   +P G ++++ G  +D        I
Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+L  IP +G LF     N            FL++P  + +
Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521


>gi|134282090|ref|ZP_01768796.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
 gi|134246619|gb|EBA46707.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
          Length = 625

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 382 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 430

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608


>gi|126457615|ref|YP_001076120.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1106a]
 gi|226195991|ref|ZP_03791577.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|242310941|ref|ZP_04809958.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
 gi|254186863|ref|ZP_04893379.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|126231383|gb|ABN94796.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106a]
 gi|157934547|gb|EDO90217.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|225931884|gb|EEH27885.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|242134180|gb|EES20583.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
          Length = 625

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 382 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 430

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608


>gi|323966662|gb|EGB62094.1| YscC/HrcC family protein type III secretion outer membrane pore
           [Escherichia coli M863]
          Length = 567

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +     +  V+D T     +   + +       G
Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204

Query: 96  QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147
            A V   L+ ++ KQ   +++L E         + R         D +++VE +  T   
Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T      A   + + L +   +Q      +K++  L+I  +  + L + I ++ +
Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L+Q+G   S        +    +     F + G        LD   F   + AL +  
Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P +       A F +      K V   T    +    YG ++   P   S  +
Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFASRNQ 425

Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +  E    +     N  D+P        T   +P G ++++ G  +D        I
Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+L  IP +G LF     N            FL++P  + +
Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521


>gi|167743291|ref|ZP_02416065.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 14]
 gi|167850302|ref|ZP_02475810.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei B7210]
 gi|167898903|ref|ZP_02486304.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 7894]
          Length = 318

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 113 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 172

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 173 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 229

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 230 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 288

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 289 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 318


>gi|172064938|ref|YP_001815650.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia ambifaria MC40-6]
 gi|171997180|gb|ACB68097.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MC40-6]
          Length = 589

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 6/222 (2%)

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
            +V+          ++ T S +    + A +        G   +             + A
Sbjct: 371 IDVQTGTGTLGQNTYNGTLSQNFGQTALAGNVLAAATPVGASVAAVLGDAGRYLMARISA 430

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTP- 320
           L+   A +  A P +  ++   A   +  Q        ++G   SV+T   G+ L   P 
Sbjct: 431 LQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRVLPM 487

Query: 321 TVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
            V   GR  +++   +    +      ++P  +    +T   +  G  +++AG   D   
Sbjct: 488 VVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFIEEGQALLIAGYRADTAT 547

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
               G+P LSKIP++GALFR     +   E     +P ++ P
Sbjct: 548 MGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 589


>gi|167923433|ref|ZP_02510524.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei BCC215]
          Length = 319

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275
           + T + +  S + + +      +     S+  VL          ++ALE +   RT A P
Sbjct: 114 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 173

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
            +T +    A   +  Q   +    +S    S++T   GV L   P V+  G   +I L 
Sbjct: 174 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 230

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++  V   +      ++P     + +T   +  G  +++AG   D     + G+P+LSK+
Sbjct: 231 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 289

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421
           P++GALFR++      +E     TP +++P
Sbjct: 290 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 319


>gi|53722566|ref|YP_111551.1| Type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|52212980|emb|CAH39018.1| Type III secretion system protein [Burkholderia pseudomallei
           K96243]
          Length = 620

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 318 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 376

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 377 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 425

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 426 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 483

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 484 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 543

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 544 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 603


>gi|254264759|ref|ZP_04955624.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
 gi|254215761|gb|EET05146.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
          Length = 620

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 318 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 376

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 377 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 425

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 426 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 483

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 484 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 543

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 544 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 603


>gi|217425200|ref|ZP_03456695.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
 gi|217391805|gb|EEC31832.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
          Length = 624

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 322 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 380

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 381 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 429

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 430 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 487

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 488 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 547

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 548 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 607


>gi|237508896|ref|ZP_04521611.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
 gi|254185160|ref|ZP_04891749.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
 gi|184215752|gb|EDU12733.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
 gi|235001101|gb|EEP50525.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
          Length = 625

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 382 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 430

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608


>gi|254253701|ref|ZP_04947018.1| type II and III secretion system protein [Burkholderia dolosa
           AUO158]
 gi|124898346|gb|EAY70189.1| type II and III secretion system protein [Burkholderia dolosa
           AUO158]
          Length = 620

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 6/222 (2%)

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
            +V+          ++ T S +    +   +        G   +             + A
Sbjct: 402 IDVQTGTGTLAQSTYNGTLSQNFGQTALPGNVLAAATPVGASVAAVLGDAGRYLMARISA 461

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTP- 320
           L++  A +  A P +  ++   A   +  Q        ++G   SV+T   G+ L   P 
Sbjct: 462 LQQTKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRVLPM 518

Query: 321 TVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
            V   GR  +++   +    +      ++P  +    +T   +  G  +++AG   D   
Sbjct: 519 VVEEDGRTRIKLDVAIQDGQLTDQTVSNLPVIQNSTINTQAFIEEGQALLIAGYRADSAT 578

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
               G+P LSKIP++GALFR     +   E     +P ++ P
Sbjct: 579 MGVTGVPGLSKIPLIGALFRTDNRQKSHMERLFLLSPRVISP 620


>gi|115360614|ref|YP_777751.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia ambifaria AMMD]
 gi|115285942|gb|ABI91417.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria AMMD]
          Length = 561

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 6/222 (2%)

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
            +V+          ++ T S +    + A +        G   +             + A
Sbjct: 343 IDVQTGTGTLGQNTYNGTLSQNFGQTALAGNVLAAATPVGASVAAVLGDAGRYLMARISA 402

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTP- 320
           L+   A +  A P +  ++   A   +  Q        ++G   SV+T   G+ L   P 
Sbjct: 403 LQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRVLPM 459

Query: 321 TVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
            V   GR  +++   +    +      ++P  +    +T   +  G  +++AG   D   
Sbjct: 460 VVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFIEEGQALLIAGYRADSAT 519

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
               G+P LSKIP++GALFR     +   E     +P ++ P
Sbjct: 520 MGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 561


>gi|67639412|ref|ZP_00438272.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei GB8 horse 4]
 gi|124382842|ref|YP_001025856.1| type III secretion system protein BsaO [Burkholderia mallei NCTC
           10229]
 gi|126445673|ref|YP_001077941.1| type III secretion system protein BsaO [Burkholderia mallei NCTC
           10247]
 gi|254175971|ref|ZP_04882629.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
           10399]
 gi|254359082|ref|ZP_04975354.1| type III secretion system protein BsaO [Burkholderia mallei
           2002721280]
 gi|126238527|gb|ABO01639.1| type III secretion system protein BsaO [Burkholderia mallei NCTC
           10247]
 gi|148028269|gb|EDK86229.1| type III secretion system protein BsaO [Burkholderia mallei
           2002721280]
 gi|160697013|gb|EDP86983.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
           10399]
 gi|238519949|gb|EEP83414.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei GB8 horse 4]
          Length = 625

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 382 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 430

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608


>gi|126442335|ref|YP_001063169.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 668]
 gi|126221826|gb|ABN85331.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 668]
          Length = 617

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 315 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 373

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 374 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 422

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 423 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 480

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 481 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 540

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 541 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 600


>gi|254301448|ref|ZP_04968892.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|157811001|gb|EDO88171.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
          Length = 625

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 382 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 430

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608


>gi|291284183|ref|YP_003501001.1| putative type III secretion apparatus protein [Escherichia coli
           O55:H7 str. CB9615]
 gi|290764056|gb|ADD58017.1| Putative type III secretion apparatus protein [Escherichia coli
           O55:H7 str. CB9615]
          Length = 567

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +     +  V+D T     +   + +       G
Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204

Query: 96  QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147
            A V   L+ ++ KQ   +++L E         + R         D +++VE +  T   
Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T      A   + + L +   +Q      +K++  L+I  +  + L + I ++ +
Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L+Q+G   S        +    +     F + G        LD   F   + AL +  
Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P +       A F +      K V   T    +    YG ++   P   +  +
Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425

Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +  E    +     N  D+P        T   +P G ++++ G  +D        I
Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+L  IP +G LF     N            FL++P  + +
Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521


>gi|320662066|gb|EFX29467.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O55:H7 str. USDA 5905]
          Length = 567

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +     +  V+D T     +   + +       G
Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204

Query: 96  QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147
            A V   L+ ++ KQ   +++L E         + R         D +++VE +  T   
Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T      A   + + L +   +Q      +K++  L+I  +  + L + I ++ +
Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L+Q+G   S        +    +     F + G        LD   F   + AL +  
Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P +       A F +      K V   T    +    YG ++   P   +  +
Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425

Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +  E    +     N  D+P        T   +P G ++++ G  +D        I
Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+L  IP +G LF     N            FL++P  + +
Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521


>gi|187919918|ref|YP_001888949.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia phytofirmans PsJN]
 gi|187718356|gb|ACD19579.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia phytofirmans PsJN]
          Length = 637

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 85/238 (35%), Gaps = 13/238 (5%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGVL 251
           V +   + ++  D    +G                  S         +      ++  ++
Sbjct: 335 VEITAVVIDITSDAASDLGIHWGGATRGGAGGYAVMNSSPTVLASSLIPALAGLNLATMI 394

Query: 252 DRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              +      +H LE++   R L+ P +  ++   A  +S      +   +      +  
Sbjct: 395 GSSANYLFAKIHLLEQSGKARILSRPQVLTLNNSEAILSSRNSLYVRVAGNQD--VDLYN 452

Query: 310 HDYGVVLHFTPTVLSPG----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
            D G+ L  TPTV S       I L +Q +       ++   +P        T   +  G
Sbjct: 453 VDTGLTLKVTPTVESGSDSARNILLSVQIDDGAFDSSLSVDGIPKVNNHSIVTQAVVADG 512

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            +++L G   +  Q     + +L  +P +GALFR+++   E  E  I  TP  VKP+ 
Sbjct: 513 ESLLLGGYEYERSQTASSQVHVLGHLPYVGALFRDTQTQVERLERLILITPR-VKPMV 569


>gi|188532685|ref|YP_001906482.1| HrcC protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
 gi|188027727|emb|CAO95580.1| HrcC protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
          Length = 676

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 92/272 (33%), Gaps = 20/272 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  +++  ++ V +   I ++ R  L ++      T        S  +  G  FVS  
Sbjct: 296 QLIGKIDVP-QNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-- 352

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                    D   F   + ALE       +A P++  +  Q A             ++  
Sbjct: 353 ---------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYI--TATGE 401

Query: 303 GATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTV 360
               +     G  L  TP  V   G   +++  ++ +  +  N     +   R    T  
Sbjct: 402 RVADIQPVTAGTSLQVTPRAVGYEGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQA 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +     +VL G   ++       IPLL  IP +G LF ++R    + +     TP L+ 
Sbjct: 462 LIGENRALVLGGFHVEESGDRDRRIPLLGDIPWIGKLFTSTRHEISQRQRLFILTPRLIG 521

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
                      D+     DA      RV + +
Sbjct: 522 DQTDPTRYVTADNRQQLSDA----MGRVERRH 549


>gi|293416115|ref|ZP_06658755.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B185]
 gi|291432304|gb|EFF05286.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B185]
          Length = 567

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +     +  V+D T     +   + +       G
Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIII-----PG 204

Query: 96  QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147
            A V   L+ ++ KQ   +++L E         + R         D +++VE +  T   
Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T      A   + + L +   +Q      +K++  L+I  +  + L + I ++ +
Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L+Q+G   S        +    +     F + G        LD   F   + AL +  
Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P +       A F +      K V   T    +    YG ++   P   +  +
Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425

Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +  E    +     N  D+P        T   +P G ++++ G  +D        I
Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+L  IP +G LF     N            FL++P  + +
Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521


>gi|15803397|ref|NP_289430.1| type III secretion apparatus protein [Escherichia coli O157:H7
           EDL933]
 gi|15832987|ref|NP_311760.1| EivG [Escherichia coli O157:H7 str. Sakai]
 gi|168747661|ref|ZP_02772683.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4113]
 gi|168753799|ref|ZP_02778806.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4401]
 gi|168759989|ref|ZP_02784996.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4501]
 gi|168766854|ref|ZP_02791861.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4486]
 gi|168775738|ref|ZP_02800745.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4196]
 gi|168778875|ref|ZP_02803882.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4076]
 gi|168785707|ref|ZP_02810714.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC869]
 gi|168799994|ref|ZP_02825001.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC508]
 gi|195936479|ref|ZP_03081861.1| EivG [Escherichia coli O157:H7 str. EC4024]
 gi|208807740|ref|ZP_03250077.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208812874|ref|ZP_03254203.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821461|ref|ZP_03261781.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209395847|ref|YP_002272337.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4115]
 gi|217327396|ref|ZP_03443479.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. TW14588]
 gi|254794814|ref|YP_003079651.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226174|ref|ZP_05940455.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256572|ref|ZP_05949105.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12517375|gb|AAG57989.1|AE005515_11 type III secretion apparatus protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13363205|dbj|BAB37156.1| type III secretion protein EivG [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768795|gb|EDU32639.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4196]
 gi|188017811|gb|EDU55933.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4113]
 gi|189003611|gb|EDU72597.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4076]
 gi|189358709|gb|EDU77128.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4401]
 gi|189363622|gb|EDU82041.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4486]
 gi|189369391|gb|EDU87807.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4501]
 gi|189373912|gb|EDU92328.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC869]
 gi|189377689|gb|EDU96105.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC508]
 gi|208727541|gb|EDZ77142.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208734151|gb|EDZ82838.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741584|gb|EDZ89266.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209157247|gb|ACI34680.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4115]
 gi|217319763|gb|EEC28188.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. TW14588]
 gi|254594214|gb|ACT73575.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|320640504|gb|EFX10043.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O157:H7 str. G5101]
 gi|320645751|gb|EFX14736.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O157:H- str. 493-89]
 gi|320651051|gb|EFX19491.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O157:H- str. H 2687]
          Length = 567

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +     +  V+D T     +   + +       G
Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204

Query: 96  QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147
            A V   L+ ++ KQ   +++L E         + R         D +++VE +  T   
Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T      A   + + L +   +Q      +K++  L+I  +  + L + I ++ +
Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L+Q+G   S        +    +     F + G        LD   F   + AL +  
Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P +       A F +      K V   T    +    YG ++   P   +  +
Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425

Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +  E    +     N  D+P        T   +P G ++++ G  +D        I
Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+L  IP +G LF     N            FL++P  + +
Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521


>gi|301027449|ref|ZP_07190786.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 69-1]
 gi|300394957|gb|EFJ78495.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 69-1]
          Length = 567

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +     +  V+D T     +   + +       G
Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204

Query: 96  QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147
            A V   L+ ++ KQ   +++L E         + R         D +++VE +  T   
Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T      A   + + L +   +Q      +K++  L+I  +  + L + I ++ +
Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L+Q+G   S        +    +     F + G        LD   F   + AL +  
Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P +       A F +      K V   T    +    YG ++   P   +  +
Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425

Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +  E    +     N  D+P        T   +P G ++++ G  +D        I
Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+L  IP +G LF     N            FL++P  + +
Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521


>gi|238759396|ref|ZP_04620561.1| Possible type III secretion system protein [Yersinia aldovae ATCC
           35236]
 gi|238702423|gb|EEP94975.1| Possible type III secretion system protein [Yersinia aldovae ATCC
           35236]
          Length = 557

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 90/250 (36%), Gaps = 21/250 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV L + I +V +  +  +G +           ++      G  V+    F+   + 
Sbjct: 301 SRSQVELSLWIIDVTQSKVDDLGVRW----------EAGNIGVAGGSVT----FNRSTLS 346

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D  +F   + A+ +    R ++ P +       A F +      +         ++    
Sbjct: 347 DSKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARVEGDRV--ATLEQVT 404

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGG 366
           YG ++   P +     + + +  E               G +P       +T   +    
Sbjct: 405 YGTMISVLPRLSGGSGVEMEVNIEDGGLNRDNTGKVADIGGLPEVNRTNINTVARIGRDK 464

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G  +D +++ +  IPLLS IP+LG LF+    N+++        P L+      D
Sbjct: 465 SLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRLLDENEAWD 524

Query: 427 LSRPDDHYSV 436
             +  D+  +
Sbjct: 525 GRQFSDNERL 534


>gi|218509314|ref|ZP_03507192.1| pilus assembly secretion protein [Rhizobium etli Brasil 5]
          Length = 177

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/128 (41%), Positives = 81/128 (63%), Gaps = 4/128 (3%)

Query: 12  MSIFLFSSNPS-VAKLPPIKEANAA---VINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           ++I +    P+    L  + EA+A    +I I+       +++ +GLNK +++ +P D  
Sbjct: 18  LAISVTGMAPASFGPLLAVDEAHADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           D+LVSDP+ AD V  + R +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE  L
Sbjct: 78  DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137

Query: 128 RRFIADSN 135
           RRFI DSN
Sbjct: 138 RRFIPDSN 145


>gi|83816469|ref|YP_445404.1| general (Type II) secretion pathway (GSP) D protein, putative
           [Salinibacter ruber DSM 13855]
 gi|83757863|gb|ABC45976.1| general (Type II) secretion pathway (GSP) D protein, putative
           [Salinibacter ruber DSM 13855]
          Length = 426

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 84/247 (34%), Gaps = 25/247 (10%)

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F S          +    F   L+ +E+    RT+A P +T  SG+      G     +T
Sbjct: 176 FESVDNILQAPDQISLSQFRRFLNLVEQDNVGRTVANPQVTVQSGEQGEIQIGQDVPIQT 235

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSP-----------GRIGLRIQTEVSEPVIGVNAG 346
            +   G T       G+++  TPT+LS              I L +  E S       +G
Sbjct: 236 -TDFAGNTVTEFFSTGIIIDVTPTLLSQPVADTSGAPVLDFIHLNVDVEDSN---SQPSG 291

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP----ILGALFRNSR 402
             P     +A T + L       + GL+       + G+P+L  +P     L  +F +  
Sbjct: 292 SGPIINRNQASTQILLLDNEATAIGGLISTQKTTRRSGVPILKDLPGWVFGLRYIFGSET 351

Query: 403 FNREETEIFIAATPFLVKPVAMR-----DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
            N  + E+ I     +V P+  R     +    D        A      R  +      A
Sbjct: 352 TNVTKQELLIVLRAEIVDPLRARAKQEGNQELIDQRRRNAQKALRRLGERYAE-DAEFPA 410

Query: 458 SEVEGQN 464
            E E Q+
Sbjct: 411 PETEAQS 417


>gi|327251623|gb|EGE63309.1| hypothetical protein ECSTEC7V_3473 [Escherichia coli STEC_7v]
          Length = 505

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +     +  V+D T     +   + +       G
Sbjct: 95  VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 142

Query: 96  QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147
            A V   L+ ++ KQ   +++L E         + R         D +++VE +  T   
Sbjct: 143 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 199

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T      A   + + L +   +Q      +K++  L+I  +  + L + I ++ +
Sbjct: 200 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 256

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L+Q+G   S        +    +     F + G        LD   F   + AL +  
Sbjct: 257 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 305

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P +       A F +      K V   T    +    YG ++   P   S  +
Sbjct: 306 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFASRNQ 363

Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +  E    +     N  D+P        T   +P G ++++ G  +D        I
Sbjct: 364 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 423

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+L  IP +G LF     N            FL++P  + +
Sbjct: 424 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 459


>gi|331654358|ref|ZP_08355358.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli M718]
 gi|331047740|gb|EGI19817.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli M718]
          Length = 567

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +     +  V+D T     +   + +       G
Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204

Query: 96  QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147
            A V   L+ ++ KQ   +++L E         + R         D +++VE +  T   
Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T      A   + + L +   +Q      +K++  L+I  +  + L + I ++ +
Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L+Q+G   S        +    +     F + G        LD   F   + AL +  
Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P +       A F +      K V   T    +    YG ++   P   +  +
Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425

Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +  E    +     N  D+P        T   +P G ++++ G  +D        I
Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+L  IP +G LF     N            FL++P  + +
Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521


>gi|195952904|ref|YP_002121194.1| type II and III secretion system protein [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932516|gb|ACG57216.1| type II and III secretion system protein [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 653

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 24/248 (9%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--------GGKFVSEGGDFSV 247
           + + V   E+ +D  KQ+G       +  G +    ++F           F         
Sbjct: 406 IQIDVKAVEISKDYQKQLGLGIGGAYAGRGITILNTSNFNPISPLANAFSFTPGSSPIVT 465

Query: 248 KGVLDRFS--------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
              ++  +                  + ALE     +++ + TL A++ Q  S T G ++
Sbjct: 466 ATPINAPNGLMSGIYSEGKFHVLGFEIQALESINKAKSVFKSTLLAMNDQPTSLTQGIEY 525

Query: 294 LYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
            + T+S+   A  +VT  +    +  TP VL  G+I L I  + +  +  + A   P+  
Sbjct: 526 PFTTISTPGQAVPTVTLQNVLNSIKVTPQVLPNGKILLNINIQ-NMSLGPLAANGQPTIN 584

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
                 ++ L  G T+ + G+   +     +GIP L K+PI+G +      ++  T +FI
Sbjct: 585 QNSNSLSIVLSDGATLAIGGVGLKNESNGLQGIPGLDKVPIIGNVGMTKNESKNNTNLFI 644

Query: 413 AATPFLVK 420
             T   V+
Sbjct: 645 FITAKRVE 652


>gi|320174026|gb|EFW49196.1| General secretion pathway protein D [Shigella dysenteriae CDC
           74-1112]
          Length = 164

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 2/112 (1%)

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           +L  TP +     + + I+ EVS+     +   +  +  RK  TTV    G  IVL GL+
Sbjct: 1   MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            D   +    +PLL  IP++G LF+++   +E+  + +   P +++     D
Sbjct: 59  DDQAGESVAKVPLLGDIPLIGKLFKSTADKKEKRNLMVFIRPTILRDGMAAD 110


>gi|91070466|gb|ABE11376.1| putative general (type II) secretion pathway protein D precursor
           [uncultured Prochlorococcus marinus clone HOT0M-10G7]
          Length = 640

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 104/284 (36%), Gaps = 47/284 (16%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVR--RDILKQIGFQHSITGS---SSGPSKSFAADFG 235
           ++  +  L++  + QV L V I +V   +  +K+  F+     +   S+       ++ G
Sbjct: 360 AETFIKSLDVRHK-QVALTVKIIDVSLTKSDIKENVFELLTGDTRIISNSGLGILTSNLG 418

Query: 236 GKFVSEGGDFS--VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA-------- 285
                +    S  + G + +  F   L A       + LA PTL      +A        
Sbjct: 419 AINPGDSARVSNALTGGVGQGGFMNWLEAKIDNNNAKILASPTLILGEDGNALSSGAAAV 478

Query: 286 -----------------SFTSGGQHLYKTVSSSTGATSVTTHD-------YGVVLHFTPT 321
                                G   +     SS    +  T         +G  L     
Sbjct: 479 DDTLSQATIGRPYKNEGFIKVGETVITSFEQSSNEGVTTCTAQEGTAGITFGAKLE---K 535

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADT-TVELPSGGTIVLAGLLKDD 377
           +   G +   +   +S     V         +  VRK DT ++ + +G T++L G+L+D 
Sbjct: 536 IDDNGYVTFALSPAISSVTSTVEIAGCGIQNTLSVRKLDTGSIRVQNGETLILTGVLQDS 595

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                  +P+L  IPI G++FR+S   +++ E+ I  TP ++K 
Sbjct: 596 DTVTTSKVPILGDIPIFGSIFRSSATQKKKNELIILVTPKILKD 639


>gi|53716325|ref|YP_106133.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
           23344]
 gi|52422295|gb|AAU45865.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
           23344]
          Length = 606

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 304 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 362

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 363 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 411

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 412 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 469

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 470 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 529

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 530 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 589


>gi|320667142|gb|EFX34105.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O157:H7 str. LSU-61]
          Length = 505

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +     +  V+D T     +   + +       G
Sbjct: 95  VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 142

Query: 96  QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147
            A V   L+ ++ KQ   +++L E         + R         D +++VE +  T   
Sbjct: 143 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 199

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T      A   + + L +   +Q      +K++  L+I  +  + L + I ++ +
Sbjct: 200 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 256

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L+Q+G   S        +    +     F + G        LD   F   + AL +  
Sbjct: 257 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 305

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P +       A F +      K V   T    +    YG ++   P   +  +
Sbjct: 306 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 363

Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +  E    +     N  D+P        T   +P G ++++ G  +D        I
Sbjct: 364 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 423

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+L  IP +G LF     N            FL++P  + +
Sbjct: 424 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 459


>gi|159903356|ref|YP_001550700.1| Type II secretory pathway, component PulD [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888532|gb|ABX08746.1| Type II secretory pathway, component PulD [Prochlorococcus marinus
           str. MIT 9211]
          Length = 575

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 110/291 (37%), Gaps = 45/291 (15%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFA 231
           + Y  S ++K +  L++  + QV L V + +V  +    +   F++ I  +    S+S  
Sbjct: 271 DPYLVSIAEKYLKQLDLR-QRQVALSVKVIDVLLNNTTDMKNAFEYGIGDNYIINSESKG 329

Query: 232 ADFG-GKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             +  G       DFSV       S  F     +       + LA PTL     Q     
Sbjct: 330 LMYMFGNKSFSPTDFSVTDSFSLASRKFMGWFRSKVLTNNAKILANPTLILGESQE-EIL 388

Query: 289 SGGQH-------------------LYKTVSSSTGATSVTTHDYGVVLHFTPT-------- 321
            G +                      K  +S     ++++ + G  L   P         
Sbjct: 389 GGSEVSGSLGLGDSTIGRPWANEGFVKVGTSVVTNYTISSAEDGSTL-CEPQTDIAGITF 447

Query: 322 ------VLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADT-TVELPSGGTIVLA 371
                 +   G +   +   +S      + GD   + +  +R+ DT  + +  G T+VL 
Sbjct: 448 GAKVHKIDDNGYVTFSLSPNISAVSETQSIGDCGNISTLSIRRLDTGNIRVRDGDTLVLT 507

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           G++K+D  +     P+L  IP+ G LFR +   R+++E+ I  TP ++K  
Sbjct: 508 GVIKEDDTKAITKTPVLGDIPLFGRLFRTNSTVRKKSELIIMVTPKVIKDS 558


>gi|213024547|ref|ZP_03338994.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 284

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 100/260 (38%), Gaps = 25/260 (9%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++  L++A +  V L + I ++ +  L+++G   S             +   G  +    
Sbjct: 15  LVKALDVA-KRHVELSLWIVDLNKSDLERLGTSWS------------GSITIGDKLGVSL 61

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           + S    LD   F   ++ALE       ++ P L       A F +      K +     
Sbjct: 62  NQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNV 121

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADT 358
           A    T  YG ++   P   + G+I + +  E             +   +P        T
Sbjct: 122 ALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLIST 179

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +P G ++++ G  +D      + IP+L K+P++G+LFR S  N+           F+
Sbjct: 180 IARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN-----VVRVFM 234

Query: 419 VKPVAMRDLSRPDDHYSVED 438
           ++P  + D   PD   SV +
Sbjct: 235 IEPKEIVDPLTPDASESVNN 254


>gi|331664433|ref|ZP_08365339.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli TA143]
 gi|331058364|gb|EGI30345.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli TA143]
          Length = 567

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +     +  V+D T     +   + +       G
Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204

Query: 96  QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147
            A V   L+ ++ KQ   +++L E         + R         D +++VE +   +  
Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKI---IAT 261

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T      A   + + L +   +Q      +K++  L+I  +  + L + I ++ +
Sbjct: 262 AGAPETDNIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L+Q+G   S        +    +     F + G        LD   F   + AL +  
Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P +       A F +      K V   T    +    YG ++   P   +  +
Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425

Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +  E    +     N  D+P        T   +P G ++++ G  +D        I
Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+L  IP +G LF     N            FL++P  + +
Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521


>gi|186976189|gb|ACD01071.1| EivG [Escherichia coli O157:H7 str. EC10]
          Length = 567

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +     +  V+D T     +   + +       G
Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204

Query: 96  QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147
            A V   L+ ++ KQ   +++L E         + R         D +++VE +  T   
Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T      A   + + L +   +Q      +K++  L+I  +  + L + I ++ +
Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L+Q+G   S        +    +     F + G        LD   F   + AL +  
Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P +       A F +      K V   T    +    YG ++   P   +  +
Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425

Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +  E    +     N  D+P        T   +P G ++++ G  +D        I
Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTFISTIARVPQGKSLLIGGYTRDTNTYESRKI 485

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+L  IP +G LF     N            FL++P  + +
Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521


>gi|42527064|ref|NP_972162.1| hypothetical protein TDE1556 [Treponema denticola ATCC 35405]
 gi|41817488|gb|AAS12073.1| conserved domain protein [Treponema denticola ATCC 35405]
          Length = 400

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 9/231 (3%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+  ++ + +  +           +  +   P   F+      F     +F +      +
Sbjct: 148 QIRYQLLVVQYEKSENINWAKSLEVKKAKGKPMSEFSGIMSNIF---NINFDIVSKFG-Y 203

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310
            F   L+        R LA+ TL  I+G+   F +     Y   +  +       S+   
Sbjct: 204 QFIAKLNFELAENKARVLADTTLNGITGEEVRFQNTNTFRYIDKTLDSNGKPLYGSMREI 263

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             G++L+    V   G I + +  +VS+    GV +G +P    +   T V  PSG  I+
Sbjct: 264 TSGLLLNIKGNVSGDGMITMEVNAQVSKQGSGGVTSGVLPPTSEKIVKTKVRTPSGKPII 323

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + GLL+ +    ++ IP L  IPI G  F++   +   TE+ I   P++ +
Sbjct: 324 IGGLLQVEQNSSEKKIPGLGDIPIAGLAFKDINGSETVTEMVIYIVPYIHR 374


>gi|254448224|ref|ZP_05061686.1| Bacterial type II and III secretion system protein [gamma
           proteobacterium HTCC5015]
 gi|198262091|gb|EDY86374.1| Bacterial type II and III secretion system protein [gamma
           proteobacterium HTCC5015]
          Length = 629

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 17/213 (7%)

Query: 246 SVKGVLDRFSFETVLHALE-RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           ++   +   +    L+ L  +      LA PTL A +GQ++ F SG +     VS   G 
Sbjct: 368 TITNFISVPAVNYNLNILNAKDGVNEILARPTLVARAGQTSEFFSGVEVSAAAVSGGAGD 427

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE--- 361
           +     + GV L  TP     G I L+++ E +  +   ++  +  +R+    TTV    
Sbjct: 428 SISVEKEIGVKLAVTPEFGPDGSIILQVEAERTF-LTTPSSSVLFEFRLDTTKTTVNANV 486

Query: 362 -LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G T++L GL + + +   +G+P+L  IP++   F        +  + I  TP   +
Sbjct: 487 AMNYGQTLILGGLNERETENDSDGVPILRDIPLINLFFSRKTQRDFKKSVMILLTP---R 543

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           P +          Y+  ++++A    R   I G
Sbjct: 544 PAS--------YMYTDPEESRASIEARSEAIRG 568


>gi|300936194|ref|ZP_07151130.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 21-1]
 gi|300458651|gb|EFK22144.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 21-1]
          Length = 567

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 145/401 (36%), Gaps = 46/401 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +     +  V+D T     +   + +       G
Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204

Query: 96  QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147
            A V   L+ ++ KQ   +++L E         + R         D +++VE +  T   
Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G+  T      A   + + L +   +Q      +K++  L+I  +  + L + I ++ +
Sbjct: 262 AGVPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L+Q+G   S        +    +     F + G        LD   F   + AL +  
Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P +       A F +      K V   T    +    YG ++   P   +  +
Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425

Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +  E    +     N  D+P        T   +P G ++++ G  +D        I
Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P+L  IP +G LF     N            FL++P  + +
Sbjct: 486 PILGSIPFIGILFGYEGTNANN-----IVRVFLIEPREIDE 521


>gi|85059260|ref|YP_454962.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
 gi|84779780|dbj|BAE74557.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 494

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 12/230 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
              + + V I +V    + ++G   S   S  G   SF +D         G FS   + +
Sbjct: 265 PQMIEIAVMIIDVDVGDINKLGIDWSGAMSLGGSGFSFNSD-----GDIRGGFSSV-ISN 318

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F   L+ LE+      L++P++  ++   A         + T         + +   
Sbjct: 319 TNDFMVRLNVLEQRAHAYILSQPSVVTLNNIQAVLD--KNVTFYTKLQGDKFAKLESVTT 376

Query: 313 GVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368
           G +L  TP ++       I L +  +  +    ++A D +P  +  +  +   L  G ++
Sbjct: 377 GSLLRVTPRLMEDQGKQNIMLSLNIQDGQQTSPLSATDPLPQVQNSEIASQATLRPGQSL 436

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +L G  +D  +Q ++ IPLL  IP+LG LFR+S                +
Sbjct: 437 LLGGFQQDKQKQGQKKIPLLGDIPLLGHLFRSSIDETHSVMRLFLIKATV 486


>gi|207724596|ref|YP_002254993.1| hrcc (hrpa) protein (partial sequence c terminus) [Ralstonia
           solanacearum MolK2]
 gi|206589818|emb|CAQ36779.1| probable hrcc (hrpa) protein (partial sequence c terminus)
           [Ralstonia solanacearum MolK2]
          Length = 303

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 25/246 (10%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240
           +  +I ++    L+Q+G    +  S     +G   +   +  G   S             
Sbjct: 61  ISASIIDITETALEQLGVDWRLHNSRFDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 120

Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              GG  S             + AL++    R  A P +  +    A   +         
Sbjct: 121 TPAGGVLSAVIGGGSRYLMARISALQQTNQARITASPKVATLDNTEAVMDNRQNFYVPVA 180

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                +  +     GV L   P V+  G   RI + +  E    +     G++P     +
Sbjct: 181 GYQ--SADLYAISAGVSLRVLPMVVMDGGTVRIRMNVHIE-DGQITSQQVGNLPVTSQSE 237

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            DT   +  G ++++AG   D   +  + IP LSKIP++GALFR  +   +  +     T
Sbjct: 238 IDTQALINEGESLLIAGYSVDQQAKTVDAIPGLSKIPLVGALFRTDQTTGQRFQRMFLVT 297

Query: 416 PFLVKP 421
           P ++ P
Sbjct: 298 PRVITP 303


>gi|22127359|ref|NP_670782.1| hypothetical protein y3485 [Yersinia pestis KIM 10]
 gi|108810715|ref|YP_646482.1| outer membrane secretin family protein [Yersinia pestis Nepal516]
 gi|229840586|ref|ZP_04460745.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842864|ref|ZP_04463016.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900910|ref|ZP_04516034.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Nepal516]
 gi|270487710|ref|ZP_06204784.1| conserved hypothetical protein [Yersinia pestis KIM D27]
 gi|294502758|ref|YP_003566820.1| hypothetical protein YPZ3_0648 [Yersinia pestis Z176003]
 gi|21960443|gb|AAM87033.1|AE013951_8 hypothetical [Yersinia pestis KIM 10]
 gi|108774363|gb|ABG16882.1| outer membrane secretin family protein [Yersinia pestis Nepal516]
 gi|229682249|gb|EEO78341.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Nepal516]
 gi|229690131|gb|EEO82188.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696952|gb|EEO86999.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|262360790|gb|ACY57511.1| hypothetical protein YPD4_0602 [Yersinia pestis D106004]
 gi|262364735|gb|ACY61292.1| hypothetical protein YPD8_0602 [Yersinia pestis D182038]
 gi|270336214|gb|EFA46991.1| conserved hypothetical protein [Yersinia pestis KIM D27]
 gi|294353217|gb|ADE63558.1| hypothetical protein YPZ3_0648 [Yersinia pestis Z176003]
 gi|320016745|gb|ADW00317.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 149

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 11/154 (7%)

Query: 323 LSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
               RI + +  EVS      N       PS R+RKA+TTVEL  G + +L GL+    +
Sbjct: 2   NEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTER 61

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
           +  + IP +  IP+LGALFRN++  R ++E+ + AT  LVKPV+ R +  PD  +     
Sbjct: 62  ESLKKIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTST 119

Query: 440 AKAFF-FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
            + FF    +      K+A E     +    GFI
Sbjct: 120 VERFFNLTNIKDAKRRKQAKE-----FLQKGGFI 148


>gi|320184380|gb|EFW59192.1| General secretion pathway protein D [Shigella flexneri CDC 796-83]
          Length = 164

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           +L  TP +     + + I+ EVS+     +   +  +  RK  TTV    G  IVL GL+
Sbjct: 1   MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            D   +    +PLL  IP++G LF+++   +E+  + +   P ++      D
Sbjct: 59  DDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILHDGMAAD 110


>gi|108809091|ref|YP_653007.1| putative outer membrane secretin family protein [Yersinia pestis
           Antiqua]
 gi|108781004|gb|ABG15062.1| putative outer membrane secretin family protein [Yersinia pestis
           Antiqua]
          Length = 149

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 11/154 (7%)

Query: 323 LSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
               RI + +  EVS      N       PS R+RKA+TTVEL  G + +L GL+    Q
Sbjct: 2   NEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTEQ 61

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
           +  + IP +  IP+LGALFRN++  R ++E+ + AT  LVKPV+ R +  PD  +     
Sbjct: 62  ESLKKIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTST 119

Query: 440 AKAFF-FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
            + FF    +      K+A E     +    GFI
Sbjct: 120 VERFFNLTNIKDAKRRKQAKE-----FLQKGGFI 148


>gi|172036496|ref|YP_001802997.1| general secretion pathway protein D [Cyanothece sp. ATCC 51142]
 gi|171697950|gb|ACB50931.1| general secretion pathway protein D [Cyanothece sp. ATCC 51142]
          Length = 778

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 99/262 (37%), Gaps = 33/262 (12%)

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------GKFV 239
           NL+ +  + Q      +A V  D          IT  + G   +F   F          V
Sbjct: 495 NLIRVPSDAQ--FFGRVAGVSMDPTLA-----GITDITPGEPDTFERTFDPETGIVTTTV 547

Query: 240 SEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           + G   +  G L  F      F   +    ++   + L +PTL    GQ A+     + +
Sbjct: 548 TPGSIATATGALPSFFQFPRRFLAQIETNIQSGNAKILTDPTLVVQEGQEATVKLTQKVI 607

Query: 295 YKTVSSSTGATSVTT-----HDYGVVLHF-TPTVLSPGRIGLRIQT------EVSEPVIG 342
               +     + V T      D G+ L      +   G I L +        +V +   G
Sbjct: 608 ENITTQVDPLSGVRTTTPVLQDAGLTLAINVDKIDDNGYINLTVSPTIAAVGDVQQFDSG 667

Query: 343 VNAGDMPSY--RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            + G    +    R+  +  + L  G T++L+G++ +  Q     +PLL  IP+LGALFR
Sbjct: 668 SDGGTNNLFLLNRRELSSGLIRLRDGQTLILSGIISESDQSTTSKVPLLGDIPLLGALFR 727

Query: 400 NSRFNREETEIFIAATPFLVKP 421
           +     + TE+ +  TP ++  
Sbjct: 728 SQTDTSQRTEVIVLLTPQILHD 749


>gi|85060069|ref|YP_455771.1| type III secretion apparatus InvG [Sodalis glossinidius str.
           'morsitans']
 gi|45504769|gb|AAS66859.1| InvG [Sodalis glossinidius]
 gi|84780589|dbj|BAE75366.1| type III secretion apparatus InvG [Sodalis glossinidius str.
           'morsitans']
          Length = 546

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 157/452 (34%), Gaps = 87/452 (19%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL-- 70
           ++    +    A    +++A              G+ + +     + +++  +   +L  
Sbjct: 113 AVVALRTILPAALRHFLQQAQLHDPRYPLRGDPGGRLLYLS-GPPMYVELVENAARLLDK 171

Query: 71  ----VSDPTKADVVVHS-----PRTMYLFGKN---VGQANVI--LIGHDGKQMLNLDILI 116
               + D  +A+V+  S      R   L G+     G A VI  L+  +G+  +     +
Sbjct: 172 EPDGIHDREQAEVIPLSYTFVGDRYYALRGEKVTIPGIATVIERLMRREGRSAVA---DV 228

Query: 117 ERDIAHLEMTLR----------RFIADSNIRV--EMVSDTVVLHGMVRTIQDSQRAVELS 164
              +   E  L             +    ++V     ++++++ G  R +Q         
Sbjct: 229 PAPLTPAEALLPVAEVRAEQDVEPLPLWPVQVIANPSNNSLLVKGTGRQVQ--------- 279

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                            + ++  L+I  +  V L + I ++ +  L Q G          
Sbjct: 280 ---------------FVRNLVRSLDIP-KRHVELSLWIIDLEKSDLDQFGINWQ------ 317

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
               +     GG  +++G        LD   F   + AL R      ++ P +       
Sbjct: 318 --GGARIGQRGGVTLNQGS----YSALDGTRFVASILALARKHRANIVSRPIILTQENVP 371

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTE----VSE 338
           A F +      + +    G  SV   +  YG ++   P      +I + +  E    VS 
Sbjct: 372 AIFDNNRTFYTRLL----GERSVELREVTYGTMISVLPRFSGDDQIEMVLTIEDGGEVSR 427

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 + D+P        T   +P G ++++ G  +D+++  +  +P L  IP++G LF
Sbjct: 428 RQSNPGSDDLPEVGRTHISTVARVPRGKSLLIGGYTRDELRGNRARLPGLGSIPLIGGLF 487

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           R+    +           FL++P   R++S P
Sbjct: 488 RHRIDKQAN-----MVRVFLIQP---REISEP 511


>gi|284052867|ref|ZP_06383077.1| type II and III secretion system protein [Arthrospira platensis
           str. Paraca]
          Length = 785

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 12/180 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310
           F + L A   +   + L +PTL    G++AS     + L    ++ T   S T       
Sbjct: 585 FLSTLQAQIVSGRAKILTDPTLVVQEGETASVQLVQEVLQSRTTTFTDTPSGTRETIQPQ 644

Query: 311 --DYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADT-TVELP 363
               G+ L      +   G + + I  EVS P   V  G    +     R   +  + L 
Sbjct: 645 LVPVGLTLGVNVQRIDDNGFVTMTINPEVSSPGSQVGTGGDDFVLQIFRRNLQSGRIRLR 704

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G T++++G+++D  +     IPLL  +PILG+LFR S  + E  E+ +  TP ++    
Sbjct: 705 DGQTLIVSGIIQDQERTDVSKIPLLGDLPILGSLFRRSSTSSERAEVIVLVTPNILDDSD 764


>gi|123443735|ref|YP_001007706.1| type III secretion system protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090696|emb|CAL13572.1| possible type III secretion system protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 563

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 21/240 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV L + I +V +  +  +G +    G              G  V+    F+   + 
Sbjct: 307 SRSQVELSLWIIDVTQSKVDDLGVRWEAGG----------IGVAGGSVT----FNRSTLS 352

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D  +F   + A+ +    R ++ P +       A F +      +         S+    
Sbjct: 353 DSKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARVEGERV--ASLQQVT 410

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGG 366
           YG ++   P +     + + +  E        +        +P       +T   +    
Sbjct: 411 YGTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINTVARIGRDK 470

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G  +D +++ +  IPLLS IP+LG LF+    N+++        P L+      D
Sbjct: 471 SLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRLLDENEAWD 530


>gi|16330870|ref|NP_441598.1| general secretion pathway protein D [Synechocystis sp. PCC 6803]
 gi|1653364|dbj|BAA18278.1| general secretion pathway protein D [Synechocystis sp. PCC 6803]
          Length = 785

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 16/184 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YKTVSSSTGATSVTT---- 309
           F+  + A  R+   + L +PTL    G++A        +    T   + G T+V T    
Sbjct: 573 FQAQIDAQIRSGNAKILTDPTLIVQEGEAAQVKLTESVIASVDTQVDTQGDTAVRTITPV 632

Query: 310 -HDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGV-------NAGDMPSYRVRKADT-T 359
             D G+ L+     +   G I LR+   V+ P              ++     R+  +  
Sbjct: 633 LEDVGLTLNVIVDRIDDNGFITLRVNPIVASPAGTQVFDSGAGAINEITLINKRELTSGV 692

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V L    T +L+G++ +  +     +P+L  +P++GALFR S    + +E+ I  TP ++
Sbjct: 693 VRLRDDQTFILSGIISELQRSTTSKVPILGDLPVIGALFRQSTDTTDRSEVIILMTPKII 752

Query: 420 KPVA 423
               
Sbjct: 753 HDST 756


>gi|330937041|gb|EGH41129.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 364

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 88/246 (35%), Gaps = 13/246 (5%)

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           SS  + +  +  GG  + + G  S   + +   F   LHALE   +   +  P++  +  
Sbjct: 3   SSRWNFNAGSVNGGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLEN 62

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEP 339
           Q A             ++S    ++     G  L  TP  L      ++ L +  E  + 
Sbjct: 63  QPAVIDFSRTEY--LTATSERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQI 120

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LF 398
            I       PS R     T   +   G++V+ G    +       +PLL  IP +G  LF
Sbjct: 121 DISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGKLLF 180

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           ++      + E     TP L+      D   P  +    +       +++ +I   ++  
Sbjct: 181 QSRSRELSQRERLFILTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGG 233

Query: 459 EVEGQN 464
           E+  + 
Sbjct: 234 ELPTRG 239


>gi|167923347|ref|ZP_02510438.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei BCC215]
          Length = 353

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 51  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 109

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 110 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 158

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 159 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 216

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 217 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 276

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 277 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 336


>gi|188534044|ref|YP_001907841.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
 gi|188029086|emb|CAO96954.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
          Length = 592

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 148/415 (35%), Gaps = 36/415 (8%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           +S   + S P V        A     + S+   G+     I LN   +       +D  V
Sbjct: 163 LSASFYISGPPVYVELVTAAAKYIDASYSNPRAGEMTVRVIKLNNTFVNDRNYTQRDTSV 222

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           S P  A V+           KN+      ++   G+ +   +     D +    +    I
Sbjct: 223 SIPGIASVL-----------KNLMSNTTKVLNVKGEAIAIDEHSDGEDRSKTHYSQFDSI 271

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
               +      D+V           ++ R V  ++T       ++   +  + ++  +++
Sbjct: 272 P--KLSDFSSPDSVFSSERPSAADIEAVRIVAYTDTNSLLVMGSERQVNFVEDLVKAIDV 329

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           + + Q+ L + I ++ +  + ++G + S  G  +    +F             + S    
Sbjct: 330 S-KRQIQLSLWIIDISKKEINELGVKWSGAGKVNNTGVTF-------------NTSSLTP 375

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            +   F   + AL ++ + + ++ P +       A F +      K +   T  +S+   
Sbjct: 376 ENSIHFLADVSALVKSGSAQVISRPEILTQENVPALFDNNSSFYAKLIGERT--SSLEKI 433

Query: 311 DYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPS 364
            YG ++   P + +  + I + +        +           MP+    +  T   +P 
Sbjct: 434 TYGTMISVLPRLATGQQEIEMILNIHDGTVPLNAQGEPDKFDSMPTTSNTQISTEARVPL 493

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G ++++ G  +D  +Q   G+PLL  IP LG +F  S  ++ +        P L+
Sbjct: 494 GHSLLVGGYSRDQDEQHNIGVPLLRDIPYLGRIFNYSYKSQTKMVRIFLIHPELL 548


>gi|300867368|ref|ZP_07112024.1| type II and III secretion system protein [Oscillatoria sp. PCC
           6506]
 gi|300334619|emb|CBN57192.1| type II and III secretion system protein [Oscillatoria sp. PCC
           6506]
          Length = 810

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 16/230 (6%)

Query: 228 KSFAADFGGKFVSEG-GDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSA 285
           ++   D  G+  S G   FS+  +    + F + L A  +    + L +PTL    G++A
Sbjct: 575 RTLNGDDAGQLDSLGEATFSLFPLFQYPTRFLSQLQAQIQTNNAKILTDPTLIVQEGETA 634

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTH-------DYGVVLHFTPT-VLSPGRIGLRIQTEVS 337
                 Q +    + +T  T +T         + G+ L+   T +   G I +RI   V 
Sbjct: 635 GVNLTEQVITNITTQTTAGTGLTQQTVTAEKGNAGLTLNVEVTRIDDNGFISMRINPTVR 694

Query: 338 EPVIGVNAGD--MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                   G+  +   + R   +  + L  G T++++G++ D  +     IP+L  +PI+
Sbjct: 695 AIARTSPLGNNLISLLQERSLSSGLIRLRDGQTLIVSGIINDTERVTASKIPILGDLPII 754

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           GALFR++  + +  E+ +  TP ++      D S     Y+   DA+   
Sbjct: 755 GALFRSTSKSNQRAEVIVLVTPQILDDS---DRSSFGYQYNPSPDARQML 801


>gi|167915501|ref|ZP_02502592.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 112]
          Length = 348

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 46  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 104

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 105 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 153

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 154 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 211

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 212 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 271

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 272 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 331


>gi|167573168|ref|ZP_02366042.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia oklahomensis C6786]
          Length = 577

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 88/266 (33%), Gaps = 43/266 (16%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------------------ 225
           + ++  I E+  D+L+QIG       S                                 
Sbjct: 313 IEIQAHIMEIDDDLLRQIGVDWRAHNSHGDIQTGMGAVTQNSYGSTSTGIGATAQNSYAN 372

Query: 226 -------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                   + +   +        G   +             ++AL+  + ++  A P + 
Sbjct: 373 GQINPFFGTTTLPGNAIANAPPAGAAITAVVGDAAHYLMARVNALQSTSKVKIDASPLVA 432

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +    A   +  +   +   S   +  + +   GV L   P ++  G   RI L +   
Sbjct: 433 TLDNSEAVMDNMTRFFVRV--SGYTSADLYSIATGVSLRVLPLIVQDGSETRIKLNVHVT 490

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
               + G     +P     + +T   +  G ++++AG   D       G+P LSKIP++G
Sbjct: 491 -DGQLTGDLVDSIPVVTSSEINTQAFVGQGESLLIAGYSTDKRSNGVTGVPWLSKIPLIG 549

Query: 396 ALFRNSRFNREETEIFIAATPFLVKP 421
           ALFR +       E     +P ++ P
Sbjct: 550 ALFRYNSDEHSHMERVFLLSPRIIDP 575


>gi|171915747|ref|ZP_02931217.1| putative type III secretion protein YscC [Verrucomicrobium spinosum
           DSM 4136]
          Length = 650

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 93/265 (35%), Gaps = 31/265 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------------SITG 221
            +++ +L++     + +   I +V     K  G +                     S   
Sbjct: 306 DELIQMLDVPTNA-IEITAAIVDVDTTNGKDFGMEFLGNYTAKDGNKYRFGFEADRSQFD 364

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTA 279
               P ++  +   G  +  GG  +V  ++    F   T L ALE       ++ P++  
Sbjct: 365 GGEAPPETTPSFVDGTNLVRGGGLNVAALIGGEGFDLLTRLRALETKGGADIVSSPSVLT 424

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--GVVLHFTPT-VLSPGRIGLRIQTEV 336
           +    A   +      +      G   V   D   GV    TP  V+  G+   R+  ++
Sbjct: 425 MENVEAVVRTEETFYVRVA----GDQEVDLFDVTAGVQFRVTPNLVVENGKRSFRLHLDI 480

Query: 337 SE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           ++      +  D+P  R     T   +P   T+++ G   +   +    IP+L  IP++G
Sbjct: 481 TDGNFEDTSVDDIPGTRESAITTQAIVPESKTLLVGGYFIERKTKNTRQIPILGDIPVVG 540

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
             F+      E  + F   TP +V 
Sbjct: 541 YAFKRKEVLNERKQRFFFITPKVVD 565


>gi|256259410|gb|ACU65047.1| HrcC [Pseudomonas syringae pv. syringae]
          Length = 701

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 98/274 (35%), Gaps = 24/274 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + +   I +V R  + ++     ++  +           GG  ++E G  S   V D+  
Sbjct: 317 IEIDAIIVDVDRSQMDELSSNWGLSAGNFS---------GGANIAENGRSSTMFVQDQDK 367

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L ALE   +   +  P++  +  Q A        + + V       +      G  
Sbjct: 368 FFAGLRALEGNGSATVIGNPSVLTLENQPAVIDFSQTEILEAVGERV--ANFQPLTAGTS 425

Query: 316 LHFTPT-VLSPG----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           L   P  + + G     I L +  E  +        + PS R     T   +    ++V+
Sbjct: 426 LQVIPRSITASGAKNQMIQLVVDIEDGQIEESNIRAEQPSVRRGNVSTQAVIAEKASLVV 485

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
            G    +  +  + +P LS IPILG  LF      +   E     TP LV      +  R
Sbjct: 486 GGFHVYENNERTKKVPYLSAIPILGKLLFTARERGQSNRERLFILTPRLVGDQV--NPMR 543

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
             D Y   +  +    +R+NKI   +E +E   +
Sbjct: 544 YID-YGNPNHVQ----DRLNKIKERREGAEQPNR 572


>gi|167724236|ref|ZP_02407472.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei DM98]
          Length = 351

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 49  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 107

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 108 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 156

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 157 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 214

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 215 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 274

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 275 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 334


>gi|167567958|ref|ZP_02360874.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia oklahomensis EO147]
          Length = 577

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 88/266 (33%), Gaps = 43/266 (16%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------------------ 225
           + ++  I E+  D+L+QIG       S                                 
Sbjct: 313 IEIQAHIMEIDDDLLRQIGVDWRAHNSHGDIQTGMGAVTQNSYGSTSTGIGATAQNSYAN 372

Query: 226 -------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                   + +   +        G   +             ++AL+  + ++  A P + 
Sbjct: 373 GQINPFFGTTTLPGNAIANAPPAGAAITAVVGDAARYLMARVNALQSTSKVKIDASPLVA 432

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +    A   +  +   +   S   +  + +   GV L   P ++  G   RI L +   
Sbjct: 433 TLDNSEAVMDNMTRFFVRV--SGYTSADLYSIATGVSLRVLPLIVQDGSETRIKLNVHVT 490

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
               + G     +P     + +T   +  G ++++AG   D       G+P LSKIP++G
Sbjct: 491 -DGQLTGDLVDSIPVVTSSEINTQAFVGQGESLLIAGYSTDKRSNGVTGVPWLSKIPLIG 549

Query: 396 ALFRNSRFNREETEIFIAATPFLVKP 421
           ALFR +       E     +P ++ P
Sbjct: 550 ALFRYNSDEHSHMERVFLLSPRIIDP 575


>gi|76817430|ref|YP_335745.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1710b]
 gi|76581903|gb|ABA51377.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710b]
          Length = 339

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 37  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 95

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 96  RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 144

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 145 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 202

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 203 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 262

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 263 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 322


>gi|167908440|ref|ZP_02495645.1| Type III secretion system protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 360

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 58  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 116

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 117 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 165

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 166 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 223

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 224 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 283

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 284 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 343


>gi|298489848|ref|YP_003720025.1| type II and III secretion system protein ['Nostoc azollae' 0708]
 gi|298231766|gb|ADI62902.1| type II and III secretion system protein ['Nostoc azollae' 0708]
          Length = 818

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 86/226 (38%), Gaps = 13/226 (5%)

Query: 235 GGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           G   V++G   +    L         F   L A  +    + L +PTL    GQ A    
Sbjct: 593 GTTSVTQGTAGTATASLPSLYKFPKRFLASLQAQVQTGNAKILTDPTLIVQEGQDAVVKL 652

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNA--G 346
               +Y  +  +         + G+ L      +   G + L +   VS      +   G
Sbjct: 653 -TSEVYGGIRITDTLREPIIKEAGLTLAVKVERIDDNGFVSLSVAPTVSAFANSASTPDG 711

Query: 347 DMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           ++     R   +  + L  G T++L+G+++D  +     +P+L  IP+LG+LFR +    
Sbjct: 712 NIALLAARSLQSGILRLRDGQTLILSGIIQDQDRTTISKLPILGDIPLLGSLFRKTNRQN 771

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           E  E+ +  TP +   +   + S    +Y+     +     R  K+
Sbjct: 772 ERREVIVLLTPQV---MDDSERSAYGYNYNPSSQVRQILERRGLKV 814


>gi|75909894|ref|YP_324190.1| type II and III secretion system protein [Anabaena variabilis ATCC
           29413]
 gi|75703619|gb|ABA23295.1| type II and III secretion system protein [Anabaena variabilis ATCC
           29413]
          Length = 811

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 92/244 (37%), Gaps = 23/244 (9%)

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           IT ++ G +       G    S    +              L A  +    + L +PTL 
Sbjct: 569 ITRNADGTTTITQGTLGTATTSLPTIYQFP-----KRLLASLQAQVQNGNAKVLTDPTLI 623

Query: 279 AISGQSASFT------SGGQHLYKTVSSSTGATSVTTH-----DYGVVLHFT-PTVLSPG 326
              GQ A          G +   ++ S+ +   S +T      + G+ L+     +   G
Sbjct: 624 VQEGQQAVVKLTTEVFGGFEESGQSSSTGSNTQSSSTKKPIIKEAGLSLNVKVERIDDNG 683

Query: 327 RIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKE 383
            + L +   VS P      + G +     R   +  + L  G T++L+G++++  +    
Sbjct: 684 FVSLSVAPTVSAPGGSTQTSDGQITLLSARSLQSGLIRLRDGQTLILSGIIQESDRSTVS 743

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +P+L  +P++G+LFR +    E  E+ +  TP +   +     S    +YS   + +  
Sbjct: 744 KLPILGDLPLIGSLFRKTNRTNERREVIVLLTPQV---MDDSQNSSYGYNYSPSPEVRQL 800

Query: 444 FFNR 447
              R
Sbjct: 801 LERR 804


>gi|320656547|gb|EFX24443.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
          Length = 567

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/404 (19%), Positives = 142/404 (35%), Gaps = 52/404 (12%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V+N + +       I IG NKV I+ +                    + RT  L G+ + 
Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEKIV 201

Query: 96  QANV-----ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDT 144
             ++      L+ ++ KQ   +++L E         + R         D +++VE +  T
Sbjct: 202 IPSMAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST 261

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
               G   T      A   + + L +   +Q      +K++  L+I  +  + L + I +
Sbjct: 262 ---AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIID 315

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           + +  L+Q+G   S        +    +     F + G        LD   F   + AL 
Sbjct: 316 IDKTDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALA 364

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           +      +A P +       A F +      K V   T    +    YG ++   P   +
Sbjct: 365 QKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAA 422

Query: 325 PGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             +I L +  E    +     N  D+P        T   +P G ++++ G  +D      
Sbjct: 423 RNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYES 482

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
             IP+L  IP +G LF     N            FL++P  + +
Sbjct: 483 RKIPILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521


>gi|167840181|ref|ZP_02466865.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia thailandensis MSMB43]
          Length = 579

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 110/300 (36%), Gaps = 21/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 276 GVAVPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 334

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    GG   +          LD   F   + AL +   
Sbjct: 335 RLDQLGIDWQGALNAPGIGVGFNNRGGGNVTT----------LDGTKFLASVAALSQTGD 384

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +     A  +    YG +++  P +     +
Sbjct: 385 ATVISRPIVLTQENVPATFDSNQTFYAKLIGER--AVQLDHVTYGTLVNVLPRLTRDASQ 442

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 443 VEMIVDIEDGNTDGATSDGQIVVDNNAMPLVNRTEINTVARVPREMSLLIGGNTRDDVTR 502

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 503 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPSDNA 562


>gi|167743212|ref|ZP_02415986.1| Type III secretion system protein [Burkholderia pseudomallei 14]
          Length = 309

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 7   GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 66  RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 114

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 172

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 233 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 292


>gi|15088592|gb|AAK84103.1|AF369954_1 YsaC [Yersinia enterocolitica]
          Length = 526

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 82/233 (35%), Gaps = 20/233 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV L + I +V +  +  +G +    G       S               F+   + 
Sbjct: 308 SRSQVELSLWIIDVTQSKVDDLGVRWEAGGIGVAGGSSVT-------------FNRSTLS 354

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D  +F   + A+ +    R ++ P +       A F +      +         S+    
Sbjct: 355 DSKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARVEGERV--ASLQQVT 412

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGG 366
           YG ++   P +     + + +  E        +        +P       +T   +    
Sbjct: 413 YGTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINTVARIGRDK 472

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++++ G  +D +++ +  IPLLS IP+LG LF+    N+++        P L+
Sbjct: 473 SLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRLL 525


>gi|167820388|ref|ZP_02452068.1| Type III secretion system protein [Burkholderia pseudomallei 91]
          Length = 324

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 22  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 80

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 81  RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 129

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 130 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 187

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 188 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 247

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 248 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 307


>gi|167850214|ref|ZP_02475722.1| Type III secretion system protein [Burkholderia pseudomallei B7210]
          Length = 333

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 31  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 89

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 90  RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 138

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 139 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 196

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 197 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 256

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 257 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 316


>gi|167898820|ref|ZP_02486221.1| Type III secretion system protein [Burkholderia pseudomallei 7894]
          Length = 325

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 23  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 81

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 82  RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 130

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 131 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 188

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 189 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 248

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 249 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 308


>gi|167828759|ref|ZP_02460230.1| Type III secretion system protein [Burkholderia pseudomallei 9]
          Length = 326

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 24  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 82

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 83  RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 131

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 132 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 189

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 190 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 249

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 250 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 309


>gi|302185350|ref|ZP_07262023.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           syringae 642]
          Length = 690

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 98/274 (35%), Gaps = 24/274 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + +   I +V R  + ++     ++  +           GG  ++E G  S   V D+  
Sbjct: 306 IEIDAIIVDVDRSQMDELSSNWGLSAGNFS---------GGANIAENGRSSTMFVQDQDK 356

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L ALE   +   +  P++  +  Q A        + + V       +      G  
Sbjct: 357 FFAGLRALEGNGSATVIGNPSVLTLENQPAVIDFSQTEILEAVGERV--ANFQPLTAGTS 414

Query: 316 LHFTPT-VLSPG----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           L   P  + + G     I L +  E  +        + PS R     T   +    ++V+
Sbjct: 415 LQVIPRSITASGAKNQMIQLVVDIEDGQIEESNIRAEQPSVRRGNVSTQAVIAEKASLVV 474

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
            G    +  +  + +P LS IPILG  LF      +   E     TP LV      +  R
Sbjct: 475 GGFHVYENNERTKKVPYLSAIPILGKLLFTARERGQSNRERLFILTPRLVGDQV--NPMR 532

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
             D Y   +  +    +R+NKI   +E +E   +
Sbjct: 533 YID-YGNPNHVQ----DRLNKIKERREGAEQPNR 561


>gi|146305065|ref|YP_001185530.1| YscC/HrcC family type III secretion outer membrane protein
           [Pseudomonas mendocina ymp]
 gi|145573266|gb|ABP82798.1| type III secretion outer membrane pore, YscC/HrcC family
           [Pseudomonas mendocina ymp]
          Length = 696

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 16/246 (6%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  + ++  L++     + +   I ++ R+ L ++  + +    S           GG 
Sbjct: 301 KAIYQGLIQQLDVPRNL-IEIDAVILDIDRNELAELSSRWAFNSGSVS---------GGA 350

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            + E G  S   + D   F   L ALE   A   +  P++  +  Q A            
Sbjct: 351 NLFEPGTTSTLFIQDAGRFAAELRALEGTGAASIMGNPSILTLENQPAVIDFSRTEYLTA 410

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           ++      ++     G  L   P  L+ G    + L +  E  + +    + + PS R  
Sbjct: 411 LAERV--ANIQPITAGTSLQVIPRSLNQGSRSQVQLIVDIEDGQIIESNISEEQPSVRRG 468

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413
              T   +   G++V+ G    +       IPLL  IP++G  LF++        E    
Sbjct: 469 NVSTQAVIAEHGSLVIGGFHSLEANDRINKIPLLGDIPVIGKLLFQSRNREFNRRERLFI 528

Query: 414 ATPFLV 419
            TP L+
Sbjct: 529 LTPRLI 534


>gi|167566206|ref|ZP_02359122.1| Type III secretion system protein [Burkholderia oklahomensis EO147]
          Length = 315

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G      D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 13  GFALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 71

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 72  RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 120

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +     A  +    YG +++  P +     +
Sbjct: 121 ATVISRPIVLTQENVPATFDSNQTFYAKLIGER--AVQLERVTYGTLVNVLPRLTRDASQ 178

Query: 328 IGLRIQTEVSEPVIGVNAG-------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G        MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 179 VEMIVDIEDGNTDGATSDGRIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 238

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 239 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 298


>gi|291569731|dbj|BAI92003.1| bifunctional pilus assembly protein PilQ/type II secretion pathway
           protein D [Arthrospira platensis NIES-39]
          Length = 785

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 12/180 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310
           F + L A   +   + L +PTL    G++AS     + L    ++ T   S T       
Sbjct: 585 FLSTLQAQIVSGRAKILTDPTLVVQEGETASVQLVQEVLQSRTTTFTDTPSGTRETIQPQ 644

Query: 311 --DYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADT-TVELP 363
               G+ L      +   G + + I  EVS P   V  G    +     R   +  + L 
Sbjct: 645 LVPVGLTLGVNVQRIDDNGFVTMTINPEVSSPGSQVGTGGDDFVLQIFRRNLQSGRIRLR 704

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G T++++G+++D  +     IPLL  +PILG+LFR S  + E  E+ +  TP ++    
Sbjct: 705 DGQTLIVSGIIQDQERTDVSKIPLLGDLPILGSLFRRSSTSSERAEVIVLVTPSILDDSD 764


>gi|148241667|ref|YP_001226824.1| Type II secretory pathway, component PulD [Synechococcus sp.
           RCC307]
 gi|147849977|emb|CAK27471.1| Type II secretory pathway, component PulD [Synechococcus sp.
           RCC307]
          Length = 760

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 82/180 (45%), Gaps = 13/180 (7%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHD- 311
            F   + AL R+++ + +A+PTL     +S+S   G        + +S+ G  + T    
Sbjct: 557 QFFDFVKALIRSSSAKVVADPTLLVQESESSSVGVGTTVFVNCSSSTSANGTRNFTPKKE 616

Query: 312 -YGVVLHF-TPTVLSPGRIGLRIQTEVSEPV-----IGVNAGDMPS--YRVRKADT-TVE 361
             G+ +      +   G + L +   +  P      +     D+P+    VR+  +    
Sbjct: 617 TAGLQVDVSVSRIDDNGFVSLALNPVLKAPSGLPVPVNCGGIDLPTRDLAVRELRSGEFR 676

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G T++L G++++++ +  +  PLL  +P++G  FR S   R++ E+ I  TP ++  
Sbjct: 677 VRDGQTLILTGVIQEEVLESVDKWPLLGDVPLIGQFFRKSSNTRQKRELVIVVTPRILDD 736


>gi|145597786|ref|YP_001161862.1| outer membrane secretin family protein [Yersinia pestis Pestoides
           F]
 gi|229837374|ref|ZP_04457537.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Pestoides A]
 gi|145209482|gb|ABP38889.1| outer membrane secretin family protein [Yersinia pestis Pestoides
           F]
 gi|229705497|gb|EEO91507.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Pestoides A]
          Length = 149

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 11/154 (7%)

Query: 323 LSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
               RI + +  EVS      N       PS R+RKA+TTVEL  G + +L GL+    +
Sbjct: 2   NEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTER 61

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
           +  + IP +  +P+LGALFRN++  R ++E+ + AT  LVKPV+ R +  PD  +     
Sbjct: 62  ESLKKIPFIGDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTST 119

Query: 440 AKAFF-FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
            + FF    +      K+A E     +    GFI
Sbjct: 120 VERFFNLTNIKDAKRRKQAKE-----FLQKGGFI 148


>gi|167466375|ref|ZP_02331079.1| putative outer membrane secretin family protein [Yersinia pestis
           FV-1]
          Length = 140

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 8/130 (6%)

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                PS R+RKA+TTVEL  G + +L GL+    ++  + IP +  IP+LGALFRN++ 
Sbjct: 17  GGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDIPLLGALFRNAQT 76

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF-FNRVNKIYGPKEASEVEG 462
            R ++E+ + AT  LVKPV+ R +  PD  +      + FF    +      K+A E   
Sbjct: 77  QRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFFNLTNIKDAKRRKQAKE--- 131

Query: 463 QNYKGAIGFI 472
             +    GFI
Sbjct: 132 --FLQKGGFI 139


>gi|187735593|ref|YP_001877705.1| type II and III secretion system protein [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425645|gb|ACD04924.1| type II and III secretion system protein [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 907

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 109/378 (28%), Gaps = 136/378 (35%)

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQH-----------------SITGSSSGPSKSFA 231
                 QV +     EV ++  +++GF                        +   S SF 
Sbjct: 513 TRGESQQVRIMTKFVEVTQENTEELGFDWIVTPFSVSNDRSTFLGGGTNYGTGSTSDSFT 572

Query: 232 ADFGG--------------KFVSEG--------------------------------GDF 245
              GG                V+ G                                G  
Sbjct: 573 QSPGGVTGWPVNSGSDTINGLVTGGNRTGDYAITKNSVDNLLNSTNRSEASQKNAAPGIM 632

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------- 297
           S+ G+ D  SF+ ++  L +      L  P++TA SG++A      +  Y T        
Sbjct: 633 SLTGIYDEGSFQMLMRGLSQKKGSDVLTAPSVTAKSGETAKIEIIREFWYPTEYEPPELP 692

Query: 298 -------------------VSSSTGATSVTT-----------------HDYGVVLHFTPT 321
                              +        +                      GV L   PT
Sbjct: 693 NSVGNSGYNNGYGYGNNGNIVDGLLGNQIQPQISSFPVTPATPGVFEMKPVGVTLEVVPT 752

Query: 322 VLSPGRIGLRIQTEVSEP--------------------------VIGVNAGDMPSYRVRK 355
           +    +  + +  + S                             +  N  + P +  R 
Sbjct: 753 I-GDNKYIIDLNFKPSIVEFEGFVNYGSPIQSTGVGSDGKPMSLTLTENRIEQPIFSKRS 811

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            +T++ +  G T+ + GL+ +++Q +++ +P+   +P++G  FR++  N  +  + I  T
Sbjct: 812 VETSLFIYDGHTVAIGGLITENVQTVEDKVPIFGDLPLIGRFFRSNSDNHIKKNLMIFVT 871

Query: 416 PFLVKPV--AMRDLSRPD 431
             ++      +R  + P 
Sbjct: 872 GQIIDATGQPVRGNALPT 889


>gi|83717183|ref|YP_439025.1| type III secretion system protein BsaO [Burkholderia thailandensis
           E264]
 gi|83651008|gb|ABC35072.1| type III secretion system protein BsaO [Burkholderia thailandensis
           E264]
          Length = 619

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 317 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 375

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 376 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 424

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +   T    +    YG +++  P +     +
Sbjct: 425 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 482

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 483 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 542

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ +P++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 543 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 602


>gi|318607000|emb|CBY28498.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 531

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 74/206 (35%), Gaps = 12/206 (5%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----SKSFAADFGGK 237
            +V+  L+I    QV ++  I E +      +G Q +            + S   +    
Sbjct: 327 DQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKTNSIQTNNNSG 385

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                    +     + +++ +  AL   +    LA P++  +    A F  G +    T
Sbjct: 386 NPIPMMMAGLTAGFYKGNWDGLFIALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 445

Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PS 350
            + +T       S++    GV+L   P +     + L I+ EVS      +         
Sbjct: 446 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSV 505

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKD 376
           +  R  +  V + SG T+V+ GLL  
Sbjct: 506 FNKRVVNNAVLVKSGETVVVGGLLDK 531


>gi|262277342|ref|ZP_06055135.1| putative outer membrane protein [alpha proteobacterium HIMB114]
 gi|262224445|gb|EEY74904.1| putative outer membrane protein [alpha proteobacterium HIMB114]
          Length = 544

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 102/266 (38%), Gaps = 30/266 (11%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI-----GFQHSITGSSSGPSKSFAADFG 235
           ++K+++ ++I  +  V ++  I        K+          +  G   G ++S      
Sbjct: 282 TEKLLDKIDIERKS-VMIEAFIVNAEDGFAKKFDANLEMISSTAAGDFRGGNQSGIGTII 340

Query: 236 GKFVSEG----------------------GDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G    +G                      G   + G + R      + A    T   T++
Sbjct: 341 GATNPQGNQLEVGTPSPSADTSLTAPTLQGGTLIIGSIGRALLSATIAASVSDTNSETIS 400

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            P + AI GQ A+ + G Q +    +S   A    T D+ +    TPT++   ++ L+I 
Sbjct: 401 NPKIFAIDGQQATISQGTQQVRSVPASGGDAGGFETLDFTLNFGVTPTIVGD-KVRLQIS 459

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                   G    + P        +TV L +G   +L G+ K+  Q     +PLL +IP+
Sbjct: 460 LANDSLGQGGTDANTP-KNTENVTSTVVLNNGDVAILGGVYKNTKQDDIIFVPLLHRIPV 518

Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
           LG  F+    +  ++++ I  T  +V
Sbjct: 519 LGEFFKKKTKSDTKSQLLIFVTANIV 544


>gi|323530312|ref|YP_004232464.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. CCGE1001]
 gi|323387314|gb|ADX59404.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. CCGE1001]
          Length = 610

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 28/240 (11%)

Query: 206 RRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEG----------G 243
             + LKQIG               + T   +G + +    FG + +S+G          G
Sbjct: 373 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLSDGTTVINTTPVGG 432

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SST 302
             +             ++AL+++   +  A P +  ++   A      +   +    +S 
Sbjct: 433 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 492

Query: 303 GATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTV 360
              SV+T   GV L   P  V   GR  +++   +    +      ++P       +T  
Sbjct: 493 DLYSVST---GVSLRVLPLVVEENGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTES 549

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D     + G+P LSKIP++GALFR     R   E     +P +++
Sbjct: 550 FVGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGALFRYRDDQRSHMERLFLLSPRIIE 609


>gi|257142133|ref|ZP_05590395.1| type III secretion system protein BsaO [Burkholderia thailandensis
           E264]
          Length = 600

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 298 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 356

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 357 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 405

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +   T    +    YG +++  P +     +
Sbjct: 406 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 463

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 464 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 523

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ +P++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 524 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 583


>gi|56751665|ref|YP_172366.1| type IV pilus assembly protein PilQ [Synechococcus elongatus PCC
           6301]
 gi|56686624|dbj|BAD79846.1| type IV pilus assembly protein PilQ [Synechococcus elongatus PCC
           6301]
          Length = 725

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 125/328 (38%), Gaps = 44/328 (13%)

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
            ++    LS  G  Q  N ++  ++  L++  + Q ++ V + ++  + L  I    S  
Sbjct: 395 ADIRTNSLSIVGDPQAINFAT-GLIQQLDLR-KRQASVNVKVIDLDLNDLNAIATSFSFG 452

Query: 221 -----GSSSGPSKSFAADFGGKFVSEGGD--FSVKGVLDRFS---------------FET 258
                 S SG  ++   D  G  +    D  F+   +    +               F  
Sbjct: 453 IGNTLFSGSGGLRTTVIDNAGSVIQPPNDSVFNPSNLPAGINPANPLLALPNQLTNNFLG 512

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFT----SGGQHLYKTVSSSTGATSVTTH---- 310
            L A       + L +PTL    G+ +          +   +T ++ +G  +V+      
Sbjct: 513 ALSASIINNKTKLLTDPTLIIQEGERSEVKLTSQVVQKIESETTTNGSGPPTVSRTIDLA 572

Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADT-TVE 361
           D G+ L      +   G I L +   +S P           N       + R+  +  + 
Sbjct: 573 DVGLQLTINIERIDDNGFITLTVLPAISSPQDVVTFGDPNTNGVLTTLIKKREVSSGKIR 632

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L    T++L+G+++D+ ++    IPLL  +P++G+LFR S  +R+  E+ +  TP ++  
Sbjct: 633 LRDSQTLILSGIIQDEERERVAKIPLLGDLPLIGSLFRTSYTDRQRREVVVVITPKILAD 692

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
               D +     Y     A++   N + 
Sbjct: 693 T---DATVFGYGYQPSPPAQSVLNNTLQ 717


>gi|81301259|ref|YP_401467.1| general secretion pathway protein D [Synechococcus elongatus PCC
           7942]
 gi|81170140|gb|ABB58480.1| general secretion pathway protein D [Synechococcus elongatus PCC
           7942]
          Length = 771

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 125/328 (38%), Gaps = 44/328 (13%)

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
            ++    LS  G  Q  N ++  ++  L++  + Q ++ V + ++  + L  I    S  
Sbjct: 441 ADIRTNSLSIVGDPQAINFAT-GLIQQLDLR-KRQASVNVKVIDLDLNDLNAIATSFSFG 498

Query: 221 -----GSSSGPSKSFAADFGGKFVSEGGD--FSVKGVLDRFS---------------FET 258
                 S SG  ++   D  G  +    D  F+   +    +               F  
Sbjct: 499 IGNTLFSGSGGLRTTVIDNAGSVIQPPNDSVFNPSNLPAGINPANPLLALPNQLTNNFLG 558

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFT----SGGQHLYKTVSSSTGATSVTTH---- 310
            L A       + L +PTL    G+ +          +   +T ++ +G  +V+      
Sbjct: 559 ALSASIINNKTKLLTDPTLIIQEGERSEVKLTSQVVQKIESETTTNGSGPPTVSRTIDLA 618

Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADT-TVE 361
           D G+ L      +   G I L +   +S P           N       + R+  +  + 
Sbjct: 619 DVGLQLTINIERIDDNGFITLTVLPAISSPQDVVTFGDPNTNGVLTTLIKKREVSSGKIR 678

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L    T++L+G+++D+ ++    IPLL  +P++G+LFR S  +R+  E+ +  TP ++  
Sbjct: 679 LRDSQTLILSGIIQDEERERVAKIPLLGDLPLIGSLFRTSYTDRQRREVVVVITPKILAD 738

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
               D +     Y     A++   N + 
Sbjct: 739 T---DATVFGYGYQPSPPAQSVLNNTLQ 763


>gi|209528276|ref|ZP_03276739.1| type II and III secretion system protein [Arthrospira maxima
           CS-328]
 gi|209491296|gb|EDZ91688.1| type II and III secretion system protein [Arthrospira maxima
           CS-328]
          Length = 737

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 12/180 (6%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGATSVT 308
           F + L A   +   + L +PTL    G+SAS     Q        +  T S S       
Sbjct: 537 FLSTLQAQIVSGRAKILTDPTLVVKEGESASVQLVQQVLQSRTTIITDTPSGSRETIQPD 596

Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELP 363
             + G+ L      +   G + + I  EVS P   V  G+    +  +R   +   + L 
Sbjct: 597 PTNVGLTLGVNVERIDDNGFVTMSINPEVSSPGARVATGNDDFFLQVFRRSLSSGRIRLR 656

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G T++++G+++D  +     IPLL  +PI+G+LFR S  + E  E+ +  TP ++    
Sbjct: 657 DGQTLIVSGIIQDQERTDVSKIPLLGDLPIVGSLFRRSTTSSERAEVIVLVTPNILDDSD 716


>gi|8996028|gb|AAF82327.1|AF005744_3 YsaC [Yersinia enterocolitica]
          Length = 525

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 21/233 (9%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV L + I +V +  +  +G +    G              G  V+    F+   + 
Sbjct: 308 SRSQVELSLWIIDVTQSKVDDLGVRWEAGG----------IGVAGGSVT----FNRSTLS 353

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D  +F   + A+ +    R ++ P +       A F +      +         S+    
Sbjct: 354 DSKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARVEGERV--ASLQQVT 411

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGG 366
           YG ++   P +     + + +  E        +        +P       +T   +    
Sbjct: 412 YGTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINTVARIGRDK 471

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++++ G  +D +++ +  IPLLS IP+LG LF+    N+++        P L+
Sbjct: 472 SLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRLL 524


>gi|307725648|ref|YP_003908861.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. CCGE1003]
 gi|307586173|gb|ADN59570.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. CCGE1003]
          Length = 610

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 86/240 (35%), Gaps = 28/240 (11%)

Query: 206 RRDILKQIGFQHSITGSS----SGPSKSFAADFGGKF------------------VSEGG 243
             + LKQIG       S     +G   +    + G                       GG
Sbjct: 373 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLADGTTVINTTPVGG 432

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SST 302
             +             ++AL+++   +  A P +  ++   A      +   +    +S 
Sbjct: 433 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 492

Query: 303 GATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTV 360
              SV+T   GV L   P  V   GR  +++   +    +      ++P       +T  
Sbjct: 493 DLYSVST---GVSLRVLPLVVEENGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTES 549

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D     + G+P LSKIP++GALFR     R   E     +P +++
Sbjct: 550 FVGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGALFRYRDDQRSHMERLFLLSPRIIE 609


>gi|320107861|ref|YP_004183451.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
 gi|319926382|gb|ADV83457.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
          Length = 638

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 116/362 (32%), Gaps = 69/362 (19%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHG-MVRTIQDSQRAVELS----------ETFLSQ 170
            L    R     + I V   S  VV+ G      +      EL+            +   
Sbjct: 278 DLANMTRALFGLTQIAVNTQSGAVVIRGPQAVVHRVHDLFTELASRTSDILFDINIYEVD 337

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLK-------------VTIAEVRRDILKQIGFQH 217
               +    +       +++A   Q  +                         +      
Sbjct: 338 KSTTRNIGFAPPTSATAIDVASTAQKLISDNQSLLSQSISSGALTLSGSTYDQELQEVAF 397

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
            +    SG S SF +  G       G F    +L      T L+ L  +T  R L    L
Sbjct: 398 LVAAGVSG-SSSFTSILGTL-----GSFDGIPLLGISMSSTSLNMLLNSTDARMLNALQL 451

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATS------------------------------- 306
            +   Q  +F  G ++   T  +++ ++S                               
Sbjct: 452 RSSDRQEVTFRVGSRYPILTAITTSASSSDVANELAAAGVSSSVIAQLTGSSGSGSTSTP 511

Query: 307 -VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
            +   D G+ L  TP VL  G + L +  ++ E + G    D+P    R   + V +P G
Sbjct: 512 QIQFEDIGLTLKITPRVLRSGEVQLDLDFKL-ESLAGTGVDDIPILNNRALKSVVTIPPG 570

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLVKPVA 423
            T +LA L+  +  +  +G+P L  +P     F+++  N +  + E+ I  TP +V    
Sbjct: 571 ETTMLAALVSTNETKALDGVPGLDNLPG----FQSTDRNADGAKDELLITVTPHIVSGST 626

Query: 424 MR 425
            R
Sbjct: 627 TR 628


>gi|126659012|ref|ZP_01730153.1| general secretion pathway protein D [Cyanothece sp. CCY0110]
 gi|126619669|gb|EAZ90397.1| general secretion pathway protein D [Cyanothece sp. CCY0110]
          Length = 743

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 15/181 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----H 310
           F   +    ++   + L +PTL    GQ A+     + +    +     + V T      
Sbjct: 534 FLAQIETNIQSGNAKILTDPTLVVQEGQEATVKLTQKVIENITTQVDPLSGVRTTTPVLQ 593

Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQT------EVSEPVIGVNAGDMPSY--RVRKADT-TV 360
           D G+ L      +   G I L +        +V     G + G    +    R+  +  +
Sbjct: 594 DAGLTLAINVDKIDDNGYINLTVSPTIAAVGDVQAFDAGADGGTNNLFLLNRRELSSGLI 653

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G T++L+G++ +  Q     +PLL  IP+LGALFR+     + TE+ +  TP ++ 
Sbjct: 654 RLRDGQTLILSGIISESDQSTTSKVPLLGDIPLLGALFRSQTDTSQRTEVIVLLTPQILH 713

Query: 421 P 421
            
Sbjct: 714 D 714


>gi|167573316|ref|ZP_02366190.1| Type III secretion system protein [Burkholderia oklahomensis C6786]
          Length = 302

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 111/295 (37%), Gaps = 22/295 (7%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D  RAV   +T               + ++  L++  + Q+ L + I ++R+  L Q+
Sbjct: 5   ASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKSRLDQL 63

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       ++ G         G  F + GG+ +    LD   F   + AL +      ++
Sbjct: 64  GIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGDATVIS 112

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRI 332
            P +       A+F S      K +     A  +    YG +++  P +     ++ + +
Sbjct: 113 RPIVLTQENVPATFDSNQTFYAKLIGER--AVQLEHVTYGTLVNVLPRLTRDASQVEMIV 170

Query: 333 QTEVSEPVIGVNAG-------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
             E        + G        MP     + +T   +P   ++++ G  +DD+ +    I
Sbjct: 171 DIEDGNTDGATSDGRIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTRRTFRI 230

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           P L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 231 PGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 285


>gi|325529582|gb|EGD06465.1| Type II secretory pathway, component PulD [Burkholderia sp. TJI49]
          Length = 397

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 42/312 (13%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
           RD+A+L  TL+            V+  V + G   +   S    + S   L     +   
Sbjct: 108 RDVAYLSETLQPLFEGR----FAVNRQVSVPGATPSPLSSP---QGSAASLVSRDSDHLV 160

Query: 178 NSSSKKVMNLLNIAGED------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              SK  +  + +          +V ++  + EV+             TG S+G + S A
Sbjct: 161 FVGSKAEIEKVKLLLPQIDIAMGEVMVRGVVYEVQ-------------TGDSNGSAFSLA 207

Query: 232 ADFG---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           A            G  F  +  L    F  VL AL      R +++P+L   SG  A+F+
Sbjct: 208 ASLLKGKLNITLAGNPFDNQVSLSTSDFSAVLSALSSDNRFRVVSQPSLRVRSGAEATFS 267

Query: 289 SGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            G +            S     SV   D GV+ +  P V     + L +  ++S  V   
Sbjct: 268 VGAEVPVLGAVSYAQGSGEPIQSVQYRDSGVIFNLRPQVRES-TVDLVVDQQLSNFVQTT 326

Query: 344 NA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
               + P+   R+  T+V++     I+L GL ++       G+  L K      LFR++ 
Sbjct: 327 TGVNNSPTLTKRQLTTSVQMRDREVILLGGLTEEKTSDNSTGLSFLPK------LFRSNT 380

Query: 403 FNREETEIFIAA 414
                +EI +  
Sbjct: 381 SEASNSEILLVI 392


>gi|45751679|emb|CAF21323.1| InvG protein [Burkholderia mallei]
          Length = 278

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 107/284 (37%), Gaps = 22/284 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 7   GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 66  RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 114

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 172

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
               IP L+ IP++G LFR      E+        P L++  A 
Sbjct: 233 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 276


>gi|167577430|ref|ZP_02370304.1| type III secretion system protein BsaO [Burkholderia thailandensis
           TXDOH]
          Length = 339

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 114/302 (37%), Gaps = 22/302 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           + G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R
Sbjct: 35  VGGVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIR 93

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +  L Q+G       ++ G         G  F + GG+ +    LD   F   + AL + 
Sbjct: 94  KSRLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQT 142

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP- 325
                ++ P +       A+F S      K +   T    +    YG +++  P +    
Sbjct: 143 GDATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDA 200

Query: 326 GRIGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            ++ + +  E        + G +       P     + +T   +P   ++++ G  +DD+
Sbjct: 201 SQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDV 260

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
            +    IP L+ IP++G LFR      E+        P L++  A     +P +     D
Sbjct: 261 TRRTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPAD 320

Query: 439 DA 440
           +A
Sbjct: 321 NA 322


>gi|113475300|ref|YP_721361.1| type II and III secretion system protein [Trichodesmium erythraeum
           IMS101]
 gi|110166348|gb|ABG50888.1| type II and III secretion system protein [Trichodesmium erythraeum
           IMS101]
          Length = 801

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 18/206 (8%)

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YKTVSSSTGAT-- 305
           +L    F + L A   +   + L +PTL    G+ AS       +    +  +  G T  
Sbjct: 587 ILYPKRFLSQLRATIVSGNAKILTDPTLVVQEGEVASLKLVNNIVRSIDSNFTDDGGTSR 646

Query: 306 ---SVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRK 355
              +V   D G+ L      +   G + + +  EVS            ++        RK
Sbjct: 647 ETRTVQFEDVGLNLVIQVERIDDNGFVTVTVNPEVSFISDRVRTDANNSSEFGTEIASRK 706

Query: 356 ADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             +  + L  G T++++G++++  +     +PLL  +PI+GALFR+S+   E  E  +  
Sbjct: 707 VQSGRIRLRDGQTLIISGIIQEQERTAVTKVPLLGDLPIIGALFRSSQNQNERAETIVLL 766

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDA 440
           TP ++      D S     Y+   DA
Sbjct: 767 TPQILDD---GDRSSWGYRYNPSPDA 789


>gi|170690596|ref|ZP_02881763.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia graminis C4D1M]
 gi|170145031|gb|EDT13192.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia graminis C4D1M]
          Length = 609

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 28/240 (11%)

Query: 206 RRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEG----------G 243
             + LKQIG               + T   +G + +    FG + +S+G          G
Sbjct: 372 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLSDGTTVINTTPLGG 431

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SST 302
             +             ++AL+++   +  A P +  ++   A      +   +    +S 
Sbjct: 432 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 491

Query: 303 GATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTV 360
              SV+T   GV L   P  V   GR  +++   +    +      ++P       +T  
Sbjct: 492 DLYSVST---GVSLRVLPLVVEESGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTES 548

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D     + G+P LSKIP++G LFR     R   E     +P +++
Sbjct: 549 FVGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGGLFRYRDDQRSHMERLFLLSPRIIE 608


>gi|285018275|ref|YP_003375986.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
           GPE PC73]
 gi|283473493|emb|CBA15996.1| probable xanthomonas secretion apparatus protein [Xanthomonas
           albilineans]
          Length = 626

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 126/378 (33%), Gaps = 46/378 (12%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVV--VHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + L+   ++     ++D +V  P  ADV+  +    +    G +            G  +
Sbjct: 227 VPLHNTFVVNRRYKIRDEMVKVPGVADVIHELFGSSS----GAHPQST------PSGSSV 276

Query: 110 LNLDILIERDIAHL-----EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           L++   +  D+ +L            ++  +  V M  + V    MV    D+   +   
Sbjct: 277 LDMQQDVPADVLNLPLPKSSDAKAEDLSGRDRMVAMKGEAVWDVRMVPNPDDNSILLYGP 336

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
              +    R  +A   +K+           Q+ L + I +V R  L  +G     +    
Sbjct: 337 SAHVELMERAIHAVDVAKR-----------QIELSLWIIDVDRQKLNALGIDWQSSARYG 385

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
             + S              +      L+   F   + AL +      ++ P +       
Sbjct: 386 SFTMS-------------ANSPQMASLNGIKFLATVSALSKRGLANIVSRPIVLTEENVP 432

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341
           A F +     Y+ V     A S+    YG ++   P +   G + + +     +      
Sbjct: 433 AIFDNSHTQYYQLVGER--AVSLEHFTYGTMVSVLPRLTQDGEVEMIVTVRDGQSQNSST 490

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             N   +P     +  T   +P   +++L G   D  +     IP LSK+P++G LFR  
Sbjct: 491 AKNTTVIPEVSDTQISTVARVPKFKSLLLGGSTIDRHENDTSYIPGLSKLPVVGRLFRLD 550

Query: 402 RFNREETEIFIAATPFLV 419
           +   E         P ++
Sbjct: 551 KTITEHMVRLFLIQPRVL 568


>gi|32307038|gb|AAP79008.1| MxiD [Shigella flexneri]
          Length = 566

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L++A +  + L + I ++ +  L  +G            + SF   FG  F       + 
Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
              LD   F   + AL +      ++ P +       A F +        V      +S+
Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360
               YG +++  P   S G+I + +  E        +      N   +P     K  T  
Sbjct: 402 EHVTYGTLINVIPRFSSQGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +P G ++++ G   +        IP LS IP++G +F+    N            FL++
Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTRNISN-----IVRVFLIQ 516

Query: 421 PVAMRDLS 428
           P  +++ S
Sbjct: 517 PREIKESS 524


>gi|187734437|ref|YP_001883208.1| type III secretion outer membrane protein MxiD [Shigella boydii CDC
           3083-94]
 gi|187426933|gb|ACD06208.1| type III secretion outer membrane protein MxiD [Shigella boydii CDC
           3083-94]
          Length = 566

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L++A +  + L + I ++ +  L  +G            + SF   FG  F       + 
Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
              LD   F   + AL +      ++ P +       A F +        V      +S+
Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360
               YG +++  P   S G+I + +  E        +      N   +P     K  T  
Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +P G ++++ G   +        IP LS IP++G +F+    N            FL++
Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQ 516

Query: 421 PVAMRDLS 428
           P  +++ S
Sbjct: 517 PREIKESS 524


>gi|15042148|gb|AAK81929.1|AF292566_13 RscC [Pseudomonas fluorescens]
          Length = 713

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 86/274 (31%), Gaps = 20/274 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + ++  L++A +  + +   I ++ R  L++ G       S           F G     
Sbjct: 318 RDLITQLDVARKL-IEIDAIILDIERTQLREFGVNWGFQNSR----------FRGGVNMA 366

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   +  R  F   + +         ++ P++  +  Q A                
Sbjct: 367 PGTSSQVSIDHRDRFYADMPSTGGQGPATMVSNPSVLTLENQPAVIDFNRTQYISPGRDY 426

Query: 302 TGATSVTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRK--A 356
                VT    G  L   P V +     +I L +  E           D     VR+   
Sbjct: 427 ATILPVT---VGTSLQVVPRVTTGRGVHQIHLVVDIEDGNLDETNPERDPNHLDVRRGKV 483

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAAT 415
            T   +    ++V+ G    D    ++ IPLL  IP+LG  L  ++  +    E     T
Sbjct: 484 STQAVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKTLVSSTERHNNRRERLFILT 543

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           P ++          P D  +    A      R +
Sbjct: 544 PRVIGDQDDPSRYLPQDDQAELQAALTPLARRYS 577


>gi|31983567|ref|NP_858278.1| outermembrane protein MxiD [Shigella flexneri 2a str. 301]
 gi|18462559|gb|AAL72331.1| MxiD, outermembrane protein of the secretin family, component of
           the Mxi-Spa secretion machinery [Shigella flexneri 2a
           str. 301]
 gi|281603900|gb|ADA76883.1| MxiD, outermembrane protein of the secretin family, component of
           the Mxi-Spa secretion machinery [Shigella flexneri
           2002017]
 gi|333003155|gb|EGK22704.1| hypothetical protein SFK218_2878 [Shigella flexneri K-218]
 gi|333020387|gb|EGK39651.1| hypothetical protein SFK304_1148 [Shigella flexneri K-304]
          Length = 566

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 23/243 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  + L + I ++ +  L  +G            + SF   FG  F       +    LD
Sbjct: 298 KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSASISTLD 348

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F   + AL +      ++ P +       A F +        V      +S+    Y
Sbjct: 349 GNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSLEHVTY 406

Query: 313 GVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           G +++  P   S G+I + +  E        +      N   +P     K  T   +P G
Sbjct: 407 GTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQG 466

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            ++++ G   +        IP LS IP++G +F+    N            FL++P  ++
Sbjct: 467 KSLLIGGYTHETNSNEIISIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQPREIK 521

Query: 426 DLS 428
           + S
Sbjct: 522 ESS 524


>gi|13449092|ref|NP_085308.1| Type III secretion protein [Shigella flexneri 5a]
 gi|547951|sp|Q04641|MXID_SHIFL RecName: Full=Outer membrane protein mxiD; Flags: Precursor
 gi|13310640|gb|AAK18464.1|AF348706_153 Type III secretion protein [Shigella flexneri 5a]
 gi|47042|emb|CAA47644.1| MXID [Shigella flexneri]
 gi|12329089|emb|CAC05820.1| MxiD, outermembrane protein of the secretin family, component of
           the Mxi-Spa secretion machinery [Shigella flexneri]
          Length = 566

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L++A +  + L + I ++ +  L  +G            + SF   FG  F       + 
Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
              LD   F   + AL +      ++ P +       A F +        V      +S+
Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360
               YG +++  P   S G+I + +  E        +      N   +P     K  T  
Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +P G ++++ G   +        IP LS IP++G +F+    N            FL++
Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIISIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQ 516

Query: 421 PVAMRDLS 428
           P  +++ S
Sbjct: 517 PREIKESS 524


>gi|194435190|ref|ZP_03067420.1| type III secretion outer membrane pore, YscC/HrcC family [Shigella
           dysenteriae 1012]
 gi|194416569|gb|EDX32708.1| type III secretion outer membrane pore, YscC/HrcC family [Shigella
           dysenteriae 1012]
          Length = 566

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L++A +  + L + I ++ +  L  +G            + SF   FG  F       + 
Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
              LD   F   + AL +      ++ P +       A F +        V      +S+
Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360
               YG +++  P   S G+I + +  E        +      N   +P     K  T  
Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +P G ++++ G   +        IP LS IP++G +F+    N            FL++
Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQ 516

Query: 421 PVAMRDLS 428
           P  +++ S
Sbjct: 517 PREIKESS 524


>gi|333011815|gb|EGK31216.1| hypothetical protein SFK227_5449 [Shigella flexneri K-227]
 gi|333011862|gb|EGK31255.1| hypothetical protein SFK227_5390 [Shigella flexneri K-227]
          Length = 566

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L++A +  + L + I ++ +  L  +G            + SF   FG  F       + 
Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
              LD   F   + AL +      ++ P +       A F +        V      +S+
Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360
               YG +++  P   S G+I + +  E        +      N   +P     K  T  
Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +P G ++++ G   +        IP LS IP++G +F+    N            FL++
Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQ 516

Query: 421 PVAMRDLS 428
           P  +++ S
Sbjct: 517 PREIKESS 524


>gi|74314944|ref|YP_313362.1| MxiD [Shigella sonnei Ss046]
 gi|73858421|gb|AAZ91127.1| MxiD [Shigella sonnei Ss046]
          Length = 566

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L++A +  + L + I ++ +  L  +G            + SF   FG  F       + 
Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
              LD   F   + AL +      ++ P +       A F +        V      +S+
Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360
               YG +++  P   S G+I + +  E        +      N   +P     K  T  
Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +P G ++++ G   +        IP LS IP++G +F+    N            FL++
Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQ 516

Query: 421 PVAMRDLS 428
           P  +++ S
Sbjct: 517 PREIKESS 524


>gi|167615580|ref|ZP_02384215.1| type III secretion system protein BsaO [Burkholderia thailandensis
           Bt4]
          Length = 351

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 49  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 107

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 108 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 156

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +   T    +    YG +++  P +     +
Sbjct: 157 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 214

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 215 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 274

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ +P++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 275 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 334


>gi|2495097|sp|Q55293|MXID_SHISO RecName: Full=Outer membrane protein mxiD; Flags: Precursor
 gi|829072|dbj|BAA09154.1| ORF14 [Shigella sonnei]
          Length = 566

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L++A +  + L + I ++ +  L  +G            + SF   FG  F       + 
Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
              LD   F   + AL +      ++ P +       A F +        V      +S+
Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360
               YG +++  P   S G+I + +  E        +      N   +P     K  T  
Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +P G ++++ G   +        IP LS IP++G +F+    N            FL++
Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQ 516

Query: 421 PVAMRDLS 428
           P  +++ S
Sbjct: 517 PREIKESS 524


>gi|45751675|emb|CAF21321.1| InvG protein [Burkholderia mallei NCTC 10247]
          Length = 272

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 107/285 (37%), Gaps = 22/285 (7%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+
Sbjct: 2   AGVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRK 60

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +  
Sbjct: 61  SRLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTG 109

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               ++ P +       A+F S      K +   T    +    YG +++  P +   G 
Sbjct: 110 DATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGS 167

Query: 328 -IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
            + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ 
Sbjct: 168 QVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVT 227

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           +    IP L+ IP++G LFR      E+        P L++  A 
Sbjct: 228 RRTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 272


>gi|82524589|ref|YP_406184.1| MxiD [Shigella dysenteriae Sd197]
 gi|81243987|gb|ABB64696.1| MxiD [Shigella dysenteriae Sd197]
          Length = 566

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L++A +  + L + I ++ +  L  +G            + SF   FG  F       + 
Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
              LD   F   + AL +      ++ P +       A F +        V      +S+
Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360
               YG +++  P   S G+I + +  E        +      N   +P     K  T  
Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSLSNYNYNNENTSVLPEVGRTKISTIA 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +P G ++++ G   +        IP LS IP++G +F+    N            FL++
Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQ 516

Query: 421 PVAMRDLS 428
           P  +++ S
Sbjct: 517 PREIKESS 524


>gi|45751739|emb|CAF25120.1| InvG protein [Burkholderia pseudomallei]
          Length = 270

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 107/284 (37%), Gaps = 22/284 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 1   GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 59

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 60  RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 108

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G  
Sbjct: 109 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 166

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 167 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 226

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
               IP L+ IP++G LFR      E+        P L++  A 
Sbjct: 227 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 270


>gi|17228526|ref|NP_485074.1| general secretion pathway protein D [Nostoc sp. PCC 7120]
 gi|17130377|dbj|BAB72988.1| general secretion pathway protein D [Nostoc sp. PCC 7120]
          Length = 823

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 18/207 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVT 308
               L A       + L +PTL    GQ+A+     + +    S       +ST   +  
Sbjct: 613 LLANLQAQVTNGNAKILTDPTLIVQEGQTANVKLTQEVVGNITSETTRGDGASTQTVTAE 672

Query: 309 THDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGV------NAGDMPSYRVRKADT-TV 360
             D G+ L      +   G + L +   V  P          N+  +     R  ++  +
Sbjct: 673 KTDVGLTLAVKIDRIDDNGFVSLSVAPVVKAPQSSAVINVSGNSQTIFLVSERSLNSGMI 732

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G T++L+G+++D  +     IP+L  IP++G+LFR +    E  E+ +  TP +  
Sbjct: 733 RLRDGQTLILSGIIQDQDRTSVSKIPILGDIPLIGSLFRKTNRTNERREVIVLLTPQV-- 790

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNR 447
            +     S    +YS   + +     R
Sbjct: 791 -MDDSQNSSYGYNYSPSPEVRQMLERR 816


>gi|299140102|ref|ZP_07033271.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298597948|gb|EFI54117.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 654

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 40/237 (16%)

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            +  F    G      G   +   +    +    L+A    +  RTL +  + A   Q  
Sbjct: 413 NASQFTNLLGVLGHFSGLPLAGVFLGSNTNLNLSLNA----SDARTLDDIQVRANDNQPV 468

Query: 286 SFTSGGQHLYKTVSSSTGATS---------------------------------VTTHDY 312
           +F +G ++   T + S+G ++                                 +   D 
Sbjct: 469 NFRAGTRYPITTSTYSSGGSNSLPSSLAGVNVGGTNLNTLLQQYLGTSTVTIPQIQYEDL 528

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G+ +  TP +L  G + L ++ ++     G N G +P    R   +T+ +P+G   +LA 
Sbjct: 529 GITVKTTPRILRSGDVRLTLELKIEALGTGSNDG-IPILTNRSLTSTITVPAGKEALLAS 587

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
            +  D  +   GIP L++IP       N     +  E+ I  TP +V+   MR  S+
Sbjct: 588 EISRDESRSMSGIPGLNEIPGFQG--TNEDKEVDTDELLITITPHIVRAGDMRIASK 642


>gi|312171371|emb|CBX79630.1| Type III secretory protein InvG [Erwinia amylovora ATCC BAA-2158]
          Length = 589

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 117/329 (35%), Gaps = 33/329 (10%)

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM----VSDTVVLHG----MVRTIQD 156
            G+      I ++      +  L+   A+ +          + +    G    +  T Q+
Sbjct: 240 SGRNTTAAQITVDNST---QQALQAASANQDGNFRPLPIFAATSQAESGGNNDIAATEQN 296

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           S   V  ++T       +    S  + +++ ++I  + Q+ L + I +V +D + ++G +
Sbjct: 297 SVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIP-KQQIQLSLWIIDVSKDDINELGVR 355

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
              +        +F             + S     +   F   + AL +      ++ P 
Sbjct: 356 WQGSAKVGNGGITF-------------NTSSLTQANSIHFLADVSALAQKGNAHVVSRPE 402

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTE 335
           +       A F +      K +   T  +S+    YG ++   P +      I + +  +
Sbjct: 403 ILTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRLDQYQHEIEMILNIQ 460

Query: 336 -----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
                ++          +P     +  T   +P G ++++ G  ++  +Q   GIPLL  
Sbjct: 461 DGGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRNQDEQHSLGIPLLRD 520

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP +G LF  S  + ++        P L+
Sbjct: 521 IPYMGRLFDYSYVSHKKMVRLFLIQPRLM 549


>gi|78779577|ref|YP_397689.1| Type II secretory pathway component PulD-like [Prochlorococcus
           marinus str. MIT 9312]
 gi|78713076|gb|ABB50253.1| Type II secretory pathway component PulD-like protein
           [Prochlorococcus marinus str. MIT 9312]
          Length = 556

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 82/251 (32%), Gaps = 32/251 (12%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L V + +V             +   S  P            +++  +       D
Sbjct: 290 QKQVALNVKVLDVNLSDKDSFSQSWFLPFGSGSPY----------IITQSPNLKAGIGPD 339

Query: 253 RFS--FETVLHALERATAIRTLAEPTLTAISG---------------QSASFTSGGQHLY 295
           R      + L A  +    + LA PTL                           G Q   
Sbjct: 340 RLGKFVSSELTASIQKGTTKVLASPTLILNESGGSAGDGSSIGRRLANEGFVEVGDQVPV 399

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIG---VNAGDMPSY 351
                     + T    G+ L      +     +   +   V+         N G++   
Sbjct: 400 NATFVEGSGCNFTYDLVGIKLGAKVLGIDRNRFVTFAMTPIVTGISGTQTITNCGEVNLL 459

Query: 352 RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             R+ DT  V + +G T+VL G+++D   +     P+L  +PI+G LFR++     + E+
Sbjct: 460 NTRRLDTGAVRIKNGETLVLTGVIQDSDIETLVKFPILGDLPIMGPLFRSTSKEVGKREL 519

Query: 411 FIAATPFLVKP 421
            +  TP ++  
Sbjct: 520 IVLVTPRIIDD 530


>gi|167950797|ref|ZP_02537871.1| type IV pilus secretin PilQ [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 263

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 45/228 (19%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228
           ++++  L+I    QV ++  I     D  K +G +   T S+S  S              
Sbjct: 37  RRLLQRLDIP-VRQVLIESRIVIANNDFTKALGVRFGATTSASAGSNEALIAGGMPGHIS 95

Query: 229 SFAADFGGKFVSEGGDFSVKGV------------------------------LDRFSFET 258
           SF  D G    +  G     G+                              +  +  + 
Sbjct: 96  SFGIDKGTFMTTTTGQPIAAGIEIPAGSGNEALMVNLPATAPSGAINFLVGKVGSYLLQL 155

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            L A++       ++ P +       A+   G +  Y+  +SS GATSV+  +  + L  
Sbjct: 156 ELSAMQSEGKGEVISSPRVITSDQNKATIKQGVEIPYQEATSS-GATSVSFKEAVLKLDV 214

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           TP +    RI + ++     P    +   +P    RK +TTV + +G 
Sbjct: 215 TPHITPDDRIRMDLEINKDSPDFSRSVLGVPPLDTRKIETTVLVDNGE 262


>gi|323166425|gb|EFZ52190.1| hypothetical protein SS53G_3269 [Shigella sonnei 53G]
          Length = 476

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 23/243 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  + L + I ++ +  L  +G            + SF   FG  F       +    LD
Sbjct: 208 KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSASISTLD 258

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F   + AL +      ++ P +       A F +        V      +S+    Y
Sbjct: 259 GNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSLEHVTY 316

Query: 313 GVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           G +++  P   S G+I + +  E        +      N   +P     K  T   +P G
Sbjct: 317 GTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQG 376

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            ++++ G   +        IP LS IP++G +F+    N            FL++P  ++
Sbjct: 377 KSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQPREIK 431

Query: 426 DLS 428
           + S
Sbjct: 432 ESS 434


>gi|186685099|ref|YP_001868295.1| type II and III secretion system protein [Nostoc punctiforme PCC
           73102]
 gi|186467551|gb|ACC83352.1| type II and III secretion system protein [Nostoc punctiforme PCC
           73102]
          Length = 792

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 19/215 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASF----TSGGQHLYKTVSSSTGATSVTTHD 311
               L A  +    + L +PTL    GQ+A+        G    + V  S  AT   + +
Sbjct: 581 LLASLQAQVQNGNAKILTDPTLIVQEGQTANVNLTQEVVGNIKREIVRDSNLATETISAE 640

Query: 312 ---YGVVLHFT-PTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADT-T 359
               G+ L      +   G + L +   V  P       V G  +  +     R  ++ +
Sbjct: 641 KDRVGLTLAVKVERIDDNGFVSLSVAPVVKAPQAPATINVGGGGSQQIFLVSERSLNSGS 700

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T++L+G+++D  +     IP+L  +P++G+LFR++  + +  E+ +  TP ++
Sbjct: 701 IRLRDGQTLILSGIIQDSDRTTVSKIPILGDLPLIGSLFRSTNRSNQRNEVIVLLTPQIM 760

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
                 + S    +Y+   + +     R  K+ G 
Sbjct: 761 DDT---ENSSYGYNYTPSPEVRQILERRGLKVPGR 792


>gi|238898588|ref|YP_002924269.1| type III outer membrane secretin precursor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229466347|gb|ACQ68121.1| type III outer membrane secretin precursor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 553

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 20/262 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K +++ L+   +  + L V I ++ ++ L Q+G              +F    G +  + 
Sbjct: 293 KTLVSELDQP-KRHIELSVWIIDLDKNTLDQMGVDWK-------GGMNFKNQLGVRLNAG 344

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                    L+   F   + AL R      ++ P +       A F +      + +   
Sbjct: 345 ------TSTLEGGQFIASVMALSRQKKANVVSRPMVLTQENIPAVFDNNRTFYSELLGEK 398

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADT 358
                +    YG ++   P      +I + I  E    V          +P        T
Sbjct: 399 N--VKLENVTYGTLVSVLPRFTENNQIEMMINIEDGNEVSQSDHETKTSLPKVGRTNIST 456

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +P G ++++ G  +D        IP L  +P++G LF     +           P  
Sbjct: 457 IARVPKGKSLLVGGYTRDANTSENTKIPGLGSLPLIGKLFSYENKSISSIVRVFLIQPRE 516

Query: 419 VKPVAMRDLS-RPDDHYSVEDD 439
           +     RD S    D      D
Sbjct: 517 INAPLNRDASDLASDIIKSSSD 538


>gi|118579256|ref|YP_900506.1| type II and III secretion system protein [Pelobacter propionicus
           DSM 2379]
 gi|118501966|gb|ABK98448.1| type II and III secretion system protein [Pelobacter propionicus
           DSM 2379]
          Length = 767

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 114/317 (35%), Gaps = 44/317 (13%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            +V L++ + EV+ +   +  F  S    GS +GP     A+      S  G   +    
Sbjct: 314 PEVLLEMKVLEVQLNDKFESAFTISTISGGSQTGPDDGQVANPLNTAASAVGSTLLGMGN 373

Query: 252 DRFSFETVL--HALERATAI-----------RTLAEPTLTAISGQSASFTSGGQHLY--- 295
              + E+ L    L     +            T+A P L A +   A    G + +    
Sbjct: 374 FALNSESTLTYQFLSSDLRLRLQLLQQNNNLTTIATPMLMAANNHPARLFIGEETVLTTG 433

Query: 296 -------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
                          V+++       T   G  L   P++ +   + +RI  E S     
Sbjct: 434 FTTMTSTSTTTSGVVVNNTLPVPVTETKSVGNTLTILPSINADRSVVMRIVHENSSVKTN 493

Query: 343 VNAGDMP-----------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
             +  +P           +    K + TV    G T+ + G+++ +I   +  +PLL  I
Sbjct: 494 GASIPLPVGTTVQTVSIDTVNTSKLEGTVLAQDGMTVAVGGMMRTNITDYESKVPLLGDI 553

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAF-FFNRVN 449
           P LG  F+  +  + +TE+ +  TP++++ P     ++R   +    +  +   + +++ 
Sbjct: 554 PYLGFFFKQKQKIKTKTELVLLITPYILQAPNLGEAVTRRRLNDLSGNTGEINSYMDKLE 613

Query: 450 KIYGPKEASEVEGQNYK 466
           +       S  +  N  
Sbjct: 614 QERSATGTSRTDAANRH 630


>gi|45751671|emb|CAF21319.1| InvG protein [Burkholderia thailandensis]
          Length = 285

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 107/284 (37%), Gaps = 22/284 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 6   GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 64

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 65  RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 113

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +   T    +    YG +++  P +     +
Sbjct: 114 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 171

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 172 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 231

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
               IP L+ +P++G LFR      E+        P L++  A 
Sbjct: 232 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 275


>gi|45751693|emb|CAF21330.1| InvG protein [Burkholderia thailandensis ATCC 700388]
          Length = 282

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 107/284 (37%), Gaps = 22/284 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 6   GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 64

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 65  RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 113

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +   T    +    YG +++  P +     +
Sbjct: 114 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 171

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 172 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 231

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
               IP L+ +P++G LFR      E+        P L++  A 
Sbjct: 232 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 275


>gi|312172187|emb|CBX80444.1| Type III secretory protein InvG [Erwinia amylovora ATCC BAA-2158]
          Length = 517

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 101/279 (36%), Gaps = 24/279 (8%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
              V +   +  A   + + L      Q   S  + ++  ++IA + Q+ L + I ++ +
Sbjct: 217 SARVSSDSVNIVAYSDTNSLLVMGTERQV--SFVEDLIRAIDIA-KRQIQLSLWIIDISK 273

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           + + ++G Q S +   S     F         S              +F   + AL ++ 
Sbjct: 274 EDINELGVQWSGSTKISSTGVIFGTSSLTPESS-------------INFLANVSALVKSG 320

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           + + ++ P +       A F +      + V      +S+    YG ++   P +     
Sbjct: 321 SAQIISRPEILTQENVPALFDNNSSFYARLVGERN--SSLEKITYGTMISVLPRLAERQH 378

Query: 328 -IGLRIQTEVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            I + +           + G      +P     +  T   +P G ++++ G  ++  +  
Sbjct: 379 EIEMILDIHDGTAPRDASGGSAHIDSLPVISNTQISTEARVPLGYSLLVGGYSRNQDEYH 438

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             GIPLL  IP LG LF  S  ++ +        P L+ 
Sbjct: 439 DIGIPLLRDIPYLGKLFDYSYKSQTKMVRLFLIHPRLLD 477


>gi|292488059|ref|YP_003530936.1| type III secretory protein InvG [Erwinia amylovora CFBP1430]
 gi|292899270|ref|YP_003538639.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291199118|emb|CBJ46232.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291553483|emb|CBA20528.1| Type III secretory protein InvG [Erwinia amylovora CFBP1430]
          Length = 588

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 102/279 (36%), Gaps = 24/279 (8%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
              V +   +  A   + + L      Q   S  + ++  ++IA + Q+ L + I ++ +
Sbjct: 288 SARVSSDSVNIVAYSDTNSLLVMGTERQV--SFVEDLIRAIDIA-KRQIQLSLWIIDISK 344

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           + + ++G Q S +   S     F         S              +F   + AL ++ 
Sbjct: 345 EDINELGVQWSGSTKISSTGVIFGTSSLTPESS-------------INFLANVSALVKSG 391

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           + + ++ P +       A F +      + V      +S+    YG ++   P +     
Sbjct: 392 SAQVISRPEILTQENVPALFDNNSSFYARLVGERN--SSLEKITYGTMISVLPRLAERQH 449

Query: 328 ---IGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              + L I    +      ++     +P     +  T   +P G ++++ G  ++  +  
Sbjct: 450 EIEMILDIHDGTAPRDASGDSAHIDSLPVISNTQISTEARVPLGYSLLVGGYSRNQDEYH 509

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             GIPLL  IP LG LF  S  ++ +        P L+ 
Sbjct: 510 DIGIPLLRDIPYLGKLFDYSYKSQTKMVRLFLIHPRLLD 548


>gi|254575124|gb|ACT68025.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii
           DC283]
          Length = 602

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 113/318 (35%), Gaps = 31/318 (9%)

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT----IQDSQRAVELSETFLS 169
           I ++ D              +   +   +      G         Q +   V  S+T   
Sbjct: 262 ITVDNDTRSALEAASATQKGNFPPLPSFNAAPAARGRAVDRDIPSQQTINIVGYSDTNSL 321

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
               ++   S  + ++N ++I  + Q+ L + I ++ +D + ++G +            +
Sbjct: 322 LIQGSERQVSFVEDLVNAIDIP-KQQIQLSLWIIDISKDDINELGIRWQGAAKMGNTGVT 380

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           F             + S         F   + AL +  + + ++ P +       A F +
Sbjct: 381 F-------------NTSSLTPESSLHFLADVSALAKKGSAQVVSRPEILTQENVPALFDN 427

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTE-----VSEPVIGV 343
                 K +   T  +S+    YG ++   P +    + I + +  +     ++      
Sbjct: 428 NSSFYAKLIGERT--SSLEKITYGTMISVLPRLAQRQQEIEMILNIQDGGLLLNADGSTE 485

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           N   +P     +  T   +P G ++++ G  +D  +  + GIPLL  IP +G LF  S  
Sbjct: 486 NIDSLPMVNNTQISTEARVPVGYSLLVGGYSRDQDEHHRLGIPLLRDIPFVGKLFDYSYT 545

Query: 404 NREETEIFIAATPFLVKP 421
           + ++         FL++P
Sbjct: 546 SHKK-----MVRLFLIQP 558


>gi|268316135|ref|YP_003289854.1| type II and III secretion system protein [Rhodothermus marinus DSM
           4252]
 gi|262333669|gb|ACY47466.1| type II and III secretion system protein [Rhodothermus marinus DSM
           4252]
          Length = 453

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 75/215 (34%), Gaps = 21/215 (9%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +        L  LE      T+A P +T  SG+      G     +T     G T     
Sbjct: 231 ISFRQLTNFLRFLETEGIGETVASPQITVQSGEQGRIQIGSDVPIQT-RDFAGNTITQFV 289

Query: 311 DYGVVLHFTPTVLSP-----------GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
             G+++  TPT+L               + L +  E S                  ADT 
Sbjct: 290 STGIIIDVTPTLLVEPAADTAGAPLIEFVHLDVMVENSSATPSAAGL---IIDRNTADTQ 346

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI----LGALFRNSRFNREETEIFIAAT 415
           V L  G   ++ GL        ++GIP L  +P     L  +F  ++    ++E+ I   
Sbjct: 347 VLLLDGEQTIIGGLYSTRESISRKGIPFLKDLPWWFFGLRYIFGRTQRTITQSELLIVLQ 406

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
             ++ P+  R  SRP +   +E   +     R+ +
Sbjct: 407 VKVLDPLTAR-ASRPLERNLLERSRRE-LMERLER 439


>gi|325282922|ref|YP_004255463.1| type II and III secretion system protein [Deinococcus proteolyticus
           MRP]
 gi|324314731|gb|ADY25846.1| type II and III secretion system protein [Deinococcus proteolyticus
           MRP]
          Length = 655

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 123/314 (39%), Gaps = 41/314 (13%)

Query: 139 EMVSDTVVLHGMVRTIQDSQR-AVELSETFLSQSGRNQYANSSSKKVMNLLNI-----AG 192
                   + G    + D+ R A + +         +     +  +V  +  +       
Sbjct: 351 SSAGTNSTVSGTNTALGDATRLASQEATIIADPRTNSLIVRGTPTQVAQIAELIPTLDRK 410

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             Q+ L+V I E+  +  K +G    +T        +   + G         F+    + 
Sbjct: 411 VPQINLQVRIQEINEEATKTLGVNWRVT--------AGGFNVGILPSGLTASFNPLQTVT 462

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQ----------------SASFTSGGQHLYK 296
            F+    L+ALE     + + + T++  SGQ                +AS  SGG+    
Sbjct: 463 GFNIFPALNALESQRVAKRVYDGTVSMQSGQGSLNAGTGSQDASSTAAASIRSGGRLELN 522

Query: 297 TVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMP 349
            +  + G+    T  YGVVL F  P+V   G I LR++ +++E          + +G  P
Sbjct: 523 II-GAEGSNIEKTIPYGVVLDFFEPSVAPDGTITLRVRGQINELRNREALNAALASGGAP 581

Query: 350 S---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           S   +    A T +   SG T++LAGL+ ++    K G+P LS+IP LGAL         
Sbjct: 582 SLLDFLNSDAQTKISFKSGETVLLAGLMAENNSTTKSGLPFLSQIPGLGALAGEQSTTNN 641

Query: 407 ETEIFIAATPFLVK 420
            T++    T  +++
Sbjct: 642 GTQMLFVITGDIIE 655


>gi|45751689|emb|CAF21328.1| InvG protein [Burkholderia thailandensis]
          Length = 277

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 107/284 (37%), Gaps = 22/284 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 7   GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 66  RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 114

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +   T    +    YG +++  P +     +
Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 172

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
               IP L+ +P++G LFR      E+        P L++  A 
Sbjct: 233 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 276


>gi|85058539|ref|YP_454241.1| type III secretion apparatus InvG [Sodalis glossinidius str.
           'morsitans']
 gi|84779059|dbj|BAE73836.1| type III secretion apparatus InvG [Sodalis glossinidius str.
           'morsitans']
          Length = 586

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 93/249 (37%), Gaps = 27/249 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S  + ++  ++IA + Q+ L + I ++ ++ + Q+G   +   +    S  F        
Sbjct: 316 SYVQDLVTAIDIA-KQQIQLSLWILDIDKEEVNQLGVDWAARANIGSGSIEF-------- 366

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                + S       + F   + AL      + +A P +       A F +      +  
Sbjct: 367 -----NSSSLSASTSYQFLAKVSALASRKDAQVVAHPEILTQENIPALFDNNSSFYVQVK 421

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIG-----VNAGDMPSYR 352
              T   ++    YG ++   P + S  + I + +  +    + G     +   ++P   
Sbjct: 422 GERT--ATLEKITYGTLISVLPRLSSGSKEIEMILDIQDGGLMTGDDNAVMQVAELPLVN 479

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
             +  T   +P G ++++ G  +D       GIP+L  IP LG LF       ++     
Sbjct: 480 TTQISTEARVPKGSSLLVGGYSRDQRVNAGWGIPVLRDIPFLGRLFDYRYKQTKQ----- 534

Query: 413 AATPFLVKP 421
               FL++P
Sbjct: 535 FVRMFLIQP 543


>gi|323186572|gb|EFZ71915.1| hypothetical protein ECOK1357_0057 [Escherichia coli 1357]
          Length = 367

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 23/243 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  + L + I ++ +  L  +G            + SF   FG  F       +    LD
Sbjct: 99  KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSASISTLD 149

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F   + AL +      ++ P +       A F +        V      +S+    Y
Sbjct: 150 GNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSLEHVTY 207

Query: 313 GVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           G +++  P   S G+I + +  E        +      N   +P     K  T   +P G
Sbjct: 208 GTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQG 267

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            ++++ G   +        IP LS IP++G +F+    N            FL++P  ++
Sbjct: 268 KSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQPREIK 322

Query: 426 DLS 428
           + S
Sbjct: 323 ESS 325


>gi|292487263|ref|YP_003530135.1| type III secretory protein InvG [Erwinia amylovora CFBP1430]
 gi|291552682|emb|CBA19727.1| Type III secretory protein InvG [Erwinia amylovora CFBP1430]
          Length = 589

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 112/328 (34%), Gaps = 31/328 (9%)

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADS-----NIRVEMVSDTVVLHGMVRTIQDSQR 159
            G+      I ++      +  L+   A+       + +   +      G        Q 
Sbjct: 240 SGRNTTAAQITVDNST---QQALQAASANQDGNFRPLPIFAATSQAESGGNNDIAAIEQN 296

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQH 217
           +V +     + S   Q +      V +L++     + Q+ L + I +V +D + ++G + 
Sbjct: 297 SVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIPKQQIQLSLWIIDVSKDDINELGVRW 356

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
             +        +F             + S     +   F   + AL +      ++ P +
Sbjct: 357 QGSAKVGNGGITF-------------NTSSLTQANSIHFLADVSALAQKGNAHVVSRPEI 403

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTE- 335
                  A F +      K +   T  +S+    YG ++   P +      I + +  + 
Sbjct: 404 LTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRLDQYQHEIEMILNIQD 461

Query: 336 ----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
               ++          +P     +  T   +P G ++++ G  ++  +Q   GIPLL  I
Sbjct: 462 GGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRNQDEQHSLGIPLLRDI 521

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P +G LF  S  + ++        P L+
Sbjct: 522 PYMGRLFDYSYVSHKKMVRLFLIQPRLM 549


>gi|257061946|ref|YP_003139834.1| type II and III secretion system protein [Cyanothece sp. PCC 8802]
 gi|256592112|gb|ACV02999.1| type II and III secretion system protein [Cyanothece sp. PCC 8802]
          Length = 899

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 15/181 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310
           F + + A  +++  + L +PTL    GQ A+     + +    +     + V T      
Sbjct: 690 FLSQIEATIQSSNGKVLTDPTLVVQEGQQATVKLTQKVIENITTQVDPLSGVRTTTPVLS 749

Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQT------EVSEPVIGVNAG--DMPSYRVRKADT-TV 360
           D G+ L      +   G I L +        +V     G + G   +     R+  +  +
Sbjct: 750 DAGLTLTIDIDKIDDNGFISLTVSPTIAAIGDVQPFDSGADGGFNQLFLLARRELTSGLI 809

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G T++L+G++ +  Q +   +P+L  IP+LGALFR+    +  +E+ +  TP ++ 
Sbjct: 810 RLRDGQTLILSGIISETDQTITNKVPILGDIPLLGALFRSQTDTKNRSEVIVLLTPQILH 869

Query: 421 P 421
            
Sbjct: 870 D 870


>gi|292900365|ref|YP_003539734.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291200213|emb|CBJ47341.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
          Length = 584

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 112/328 (34%), Gaps = 31/328 (9%)

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADS-----NIRVEMVSDTVVLHGMVRTIQDSQR 159
            G+      I ++      +  L+   A+       + +   +      G        Q 
Sbjct: 235 SGRNTTAAQITVDNST---QQALQAASANQDGNFRPLPIFAATSQAESGGNNDIAAIEQN 291

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQH 217
           +V +     + S   Q +      V +L++     + Q+ L + I +V +D + ++G + 
Sbjct: 292 SVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIPKQQIQLSLWIIDVSKDDINELGVRW 351

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
             +        +F             + S     +   F   + AL +      ++ P +
Sbjct: 352 QGSAKVGNGGITF-------------NTSSLTQANSIHFLADVSALAQKGNAHVVSRPEI 398

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTE- 335
                  A F +      K +   T  +S+    YG ++   P +      I + +  + 
Sbjct: 399 LTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRLDQYQHEIEMILNIQD 456

Query: 336 ----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
               ++          +P     +  T   +P G ++++ G  ++  +Q   GIPLL  I
Sbjct: 457 GGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRNQDEQHSLGIPLLRDI 516

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P +G LF  S  + ++        P L+
Sbjct: 517 PYMGRLFDYSYVSHKKMVRLFLIQPRLM 544


>gi|310767456|gb|ADP12406.1| Type III secretion apparatus [Erwinia sp. Ejp617]
          Length = 588

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/346 (17%), Positives = 124/346 (35%), Gaps = 40/346 (11%)

Query: 94  VGQANVI--LIGHDGK--QMLNLDILIE------RDIAHLEMT--LRRFIAD-SNIRVEM 140
            G A+V+  L+ + G+   +    I ++       D A L+     + F+ D SN  VE 
Sbjct: 224 PGVASVLNKLLNNSGRLSVLRGARISVDEENQNVNDSATLKRRGDFKSFMPDFSNEEVEA 283

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            +              +  A   + + L      Q   S  + ++  ++IA + Q+ L +
Sbjct: 284 DNHG---SDTASNDSVNIVAYSDTNSLLVMGTERQV--SFVEDIIQAIDIA-KRQIQLSL 337

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            I ++ ++ + ++G Q S +         F         S              +F   +
Sbjct: 338 WIIDISKEDINELGVQWSGSAKIGSTGVIFGTSSLTPESS-------------INFLADV 384

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            AL  + + + ++ P +       A F +      K V      +S+    YG ++   P
Sbjct: 385 SALVESGSAQVISRPEILTQENVPALFDNNSSFYAKLVGERN--SSLEKITYGTMISVLP 442

Query: 321 TVLS-PGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            +      I + +           +        +P     +  T   +P G ++++ G  
Sbjct: 443 RLAEHQQEIEMILNIHDGNVPRDASGASAHVDSLPVISNTQISTEARVPLGYSLLVGGYS 502

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++  +    GIPLL  IP LG +F  S  ++ +        P L++
Sbjct: 503 RNQDEYHNIGIPLLRDIPYLGKIFDYSYTSQTKMVRLFLIHPELLE 548


>gi|197106378|ref|YP_002131755.1| hypothetical protein PHZ_c2917 [Phenylobacterium zucineum HLK1]
 gi|196479798|gb|ACG79326.1| hypothetical protein PHZ_c2917 [Phenylobacterium zucineum HLK1]
          Length = 612

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 72/234 (30%), Gaps = 9/234 (3%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
                +   I           G        +  G+    ++S++        S       
Sbjct: 293 PRMAMVDAVILRTDDTRSATNGVNLLKNLSAYVGNGITVTRSWSTGQPATKTSVVTQNLG 352

Query: 248 KGVLDRFSFETVLH-ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
            G          L+ A         LA+PTL A+  Q A F SG               S
Sbjct: 353 LGSSVGGVLSYSLNIANATEQRAEILAQPTLLALDRQPAQFFSGSNVTIALNGGPGSYGS 412

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--RVRKADT-TVELP 363
           V     GV L  TPT +    + + ++   S      ++          R   T  V L 
Sbjct: 413 VQNQPVGVSLSVTPTFVDDDSMLVSVKAVRSFFEETADSATFVQSVQTSRNMVTANVLLR 472

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
              T+VL+GL + ++  +    PLL  IP +  LF           + I  TP 
Sbjct: 473 FDQTLVLSGLSEREVTSIDSRTPLLGDIPGVQHLFATKEDRDYTRSVVIMLTPR 526


>gi|218248885|ref|YP_002374256.1| type II and III secretion system protein [Cyanothece sp. PCC 8801]
 gi|218169363|gb|ACK68100.1| type II and III secretion system protein [Cyanothece sp. PCC 8801]
          Length = 743

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 15/181 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310
           F + + A  +++  + L +PTL    GQ A+     + +    +     + V T      
Sbjct: 534 FLSQIEATIQSSNGKVLTDPTLVVQEGQQATVKLTQKVIENITTQVDPLSGVRTTTPVLS 593

Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQT------EVSEPVIGVNAG--DMPSYRVRKADT-TV 360
           D G+ L      +   G I L +        +V     G + G   +     R+  +  +
Sbjct: 594 DAGLTLTIDIDKIDDNGFISLTVSPTIAAIGDVQPFDSGADGGFNQLFLLARRELTSGLI 653

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G T++L+G++ +  Q +   +P+L  IP+LGALFR+    +  +E+ +  TP ++ 
Sbjct: 654 RLRDGQTLILSGIISETDQTITNKVPILGDIPLLGALFRSQTDTKNRSEVIVLLTPQILH 713

Query: 421 P 421
            
Sbjct: 714 D 714


>gi|45504747|gb|AAS66838.1| YsaC [Sodalis glossinidius]
          Length = 500

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 93/249 (37%), Gaps = 27/249 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S  + ++  ++IA + Q+ L + I ++ ++ + Q+G   +   +    S  F        
Sbjct: 230 SYVQDLVTAIDIA-KQQIQLSLWILDIDKEEVNQLGVDWAARANIGSGSIEF-------- 280

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                + S       + F   + AL      + +A P +       A F +      +  
Sbjct: 281 -----NSSSLSASTSYQFLAKVSALASRKDAQVVAHPEILTQENIPALFDNNSSFYVQVK 335

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIG-----VNAGDMPSYR 352
              T   ++    YG ++   P + S  + I + +  +    + G     +   ++P   
Sbjct: 336 GERT--ATLEKITYGTLISVLPRLSSGSKEIEMILDIQDGGLMTGDDNAVMQVAELPLVN 393

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
             +  T   +P G ++++ G  +D       GIP+L  IP LG LF       ++     
Sbjct: 394 TTQISTEARVPKGSSLLVGGYSRDQRVNAGWGIPVLRDIPFLGRLFDYRYKQTKQ----- 448

Query: 413 AATPFLVKP 421
               FL++P
Sbjct: 449 FVRMFLIQP 457


>gi|45751673|emb|CAF21320.1| InvG protein [Burkholderia thailandensis]
          Length = 270

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 106/280 (37%), Gaps = 22/280 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 5   GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 63

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 64  RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 112

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +   T    +    YG +++  P +     +
Sbjct: 113 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 170

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        + G +       P     + +T   +P   ++++ G  +DD+ +
Sbjct: 171 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 230

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               IP L+ +P++G LFR      E+        P L++
Sbjct: 231 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLR 270


>gi|325284394|ref|YP_004256934.1| type II and III secretion system protein [Deinococcus proteolyticus
           MRP]
 gi|324316458|gb|ADY27571.1| type II and III secretion system protein [Deinococcus proteolyticus
           MRP]
          Length = 784

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 102/259 (39%), Gaps = 21/259 (8%)

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGE------DQVTLKVTIAEVRRDILKQIGFQHSI 219
           T L+    N       + V+  +  A +        V + + + +V++   K +G    +
Sbjct: 440 TILADDRTNSLLIVGPRGVVEEMVTAVQTIDVPVQAVRVNLKVLQVKQSDAKALGLDWKL 499

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                    +F    G               L   S E  L+A       RTL +   TA
Sbjct: 500 ----GLGGVTFGQQNGSL------SLGYTPSLTPASIEAKLNATLSNGNGRTLIDSQFTA 549

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +SGQ   F +GG+ +++  SS+ G  +V T    + YG+ +   P +   G + L + T 
Sbjct: 550 LSGQETKFQNGGELVFRPQSSTVGDNTVQTPAQTYSYGLDITMRPRIAPDGTVVLVLDTT 609

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           +  P +     D      +   TTV++  G T+VL G++   +     GIP L  +P++G
Sbjct: 610 LGNPPV-RGVLDSIQQTRQALKTTVQIRPGETVVLGGVVTSSVSNSSSGIPGLRDLPVIG 668

Query: 396 ALFRNSRFNREETEIFIAA 414
            LF     +R +  +    
Sbjct: 669 PLFGQQSTDRNDDALLFVL 687


>gi|91210748|ref|YP_540734.1| putative phage-related secreted protein [Escherichia coli UTI89]
 gi|149365806|ref|ZP_01887841.1| putative phage-related secreted protein [Yersinia pestis CA88-4125]
 gi|165927175|ref|ZP_02223007.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938242|ref|ZP_02226801.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165938650|ref|ZP_02227206.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|167422164|ref|ZP_02313917.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167466986|ref|ZP_02331690.1| putative phage-related secreted protein [Yersinia pestis FV-1]
 gi|191174647|ref|ZP_03036128.1| type II/III secretion system protein [Escherichia coli F11]
 gi|218929372|ref|YP_002347247.1| putative phage-related secreted protein [Yersinia pestis CO92]
 gi|229837795|ref|ZP_04457954.1| General secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229898356|ref|ZP_04513503.1| General secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|91072322|gb|ABE07203.1| putative phage-related secreted protein [Escherichia coli UTI89]
 gi|115347983|emb|CAL20908.1| putative phage-related secreted protein [Yersinia pestis CO92]
 gi|149292219|gb|EDM42293.1| putative phage-related secreted protein [Yersinia pestis CA88-4125]
 gi|165913524|gb|EDR32145.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165913903|gb|EDR32521.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920843|gb|EDR38091.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166958976|gb|EDR55997.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|190905074|gb|EDV64732.1| type II/III secretion system protein [Escherichia coli F11]
 gi|229688646|gb|EEO80715.1| General secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694161|gb|EEO84208.1| General secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. PEXU2]
          Length = 414

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 107/286 (37%), Gaps = 25/286 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           +L G V    ++  AV   ++    SG + Y N +   ++       ++ + +  T+   
Sbjct: 122 ILGGYVSGSFNNSGAVISDDSLKGSSGASNYINRTGDILV---YYGTKEDIAILKTLVTS 178

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------LDRFSFET 258
              +  ++     +    +  S         K +S+  + SV          +   S + 
Sbjct: 179 LDTMSDEVVVSGYVFEVQTSQSDGSGILLAAKILSDKFNISVGAAGLDNFINIRTGSIDA 238

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTTHDYGVV 315
           + + L+  +    ++ P L   +  SASF+ G         TV+++T   SV     GV+
Sbjct: 239 IFNLLKTDSRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVL 298

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            + TP++ S   + L+IQ ++S  V       + P+   R   T V L  G  I+L GL 
Sbjct: 299 FNVTPSIKSR-TMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLA 357

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +    +   G           + F +      +T+I +      V 
Sbjct: 358 EQKDSKASSGW----------SFFGSRTSESNKTDIMVMLQVRKVD 393


>gi|259908646|ref|YP_002649002.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
 gi|224964268|emb|CAX55775.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
 gi|283478618|emb|CAY74534.1| Type III secretory protein InvG [Erwinia pyrifoliae DSM 12163]
          Length = 588

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 121/346 (34%), Gaps = 40/346 (11%)

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERD----------IAHLEMTLRRFIAD-SNIRVEM 140
            G A+V+  L+ + G+  +   + I  D           +      + F+ D SN  VE 
Sbjct: 224 PGVASVLNKLLNNSGRLSVLRGVRISVDEENQNVNDSATSKRRGDFKSFMPDFSNEEVEA 283

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            +              +  A   + + L      Q   S  + ++  ++IA + Q+ L +
Sbjct: 284 DNHG---SDTASNDSVNIVAYSDTNSLLVMGTERQV--SFVEDIIQAIDIA-KRQIQLSL 337

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            I ++ ++ + ++G Q S +         F         S              +F   +
Sbjct: 338 WIIDISKEDINELGVQWSGSAKIGSTGVIFGTSSLTPESS-------------INFLADV 384

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            AL  + + + ++ P +       A F +      K V      +S+    YG ++   P
Sbjct: 385 SALVESGSAQVISRPEILTQENVPALFDNNSSFYAKLVGERN--SSLEKITYGTMISVLP 442

Query: 321 TVLS-PGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            +      I + +           +        +P     +  T   +P G ++++ G  
Sbjct: 443 RLAEHQQEIEMILNIHDGNVPRDASGASAHVDSLPVISNTQISTEARVPLGYSLLVGGYS 502

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++  +    GIPLL  IP LG +F  S  ++ +        P L++
Sbjct: 503 RNQDEYHNIGIPLLRDIPYLGKIFDYSYTSQTKMVRLFLIHPELLE 548


>gi|306813501|ref|ZP_07447691.1| putative phage-related secreted protein [Escherichia coli NC101]
 gi|305853246|gb|EFM53686.1| putative phage-related secreted protein [Escherichia coli NC101]
          Length = 414

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 107/286 (37%), Gaps = 25/286 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           +L G V    ++  AV   ++    SG + Y N +   ++       ++ + +  T+   
Sbjct: 122 ILGGYVSGSFNNSGAVISDDSLKGSSGASNYINRTGDILV---YYGTKEDIAILKTLVTS 178

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------LDRFSFET 258
              +  ++     +    +  S         K +S+  + SV          +   S + 
Sbjct: 179 LDTMSDEVVVSGYVFEVQTSQSDGSGILLAAKILSDKFNISVGAAGLDNFINIRTGSIDA 238

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTTHDYGVV 315
           + + L+  +    ++ P L   +  SASF+ G         TV+++T   SV     GV+
Sbjct: 239 IFNLLKTDSRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVL 298

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            + TP++ S   + L+IQ ++S  V       + P+   R   T V L  G  I+L GL 
Sbjct: 299 FNVTPSIKSR-TMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLA 357

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +    +   G           + F +      +T+I +      V 
Sbjct: 358 EQKDSKASSGW----------SFFGSRTSESNKTDIMVMLQVRKVD 393


>gi|241765871|ref|ZP_04763805.1| pilus (MSHA type) biogenesis protein MshL [Acidovorax delafieldii
           2AN]
 gi|241364195|gb|EER59385.1| pilus (MSHA type) biogenesis protein MshL [Acidovorax delafieldii
           2AN]
          Length = 599

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 43/269 (15%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQH-----------SITGSSSGPSKSFAADFGGKFVSEG 242
            QV ++  + +V+     + G                +    G S +   + GG +    
Sbjct: 331 KQVYVEAQLIDVQLSDNFEFGVDWTTLRSRLAAGFGSSPMQLGGSTATLPNAGGGYPGRA 390

Query: 243 GDFSVKGVLD-----------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                  +               ++  V++AL     ++ L+ P +   +G  A  + G 
Sbjct: 391 ISIPAALIGSVAGPALGVSYQGSNYGIVINALRSFGNLKVLSNPNVQVRNGTPALLSVGT 450

Query: 292 QHLYKTVSSST------------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
              Y + S+ST             +    T   GV++   P V   GRI L +    S+ 
Sbjct: 451 SSRYVSQSASTQTVPGGGASTTSSSVQTDTVFSGVMVGVLPMVRDDGRIELLLNPMQSDV 510

Query: 340 ---------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
                    V G N   +P    +   TT+ +  G  +V+ GL+         G P +S 
Sbjct: 511 DPASLQLVAVGGDNLVSLPKVSYKGLTTTLNVGDGDVVVVGGLIDQRTSNNDRGAPGVSD 570

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           +P+LG LF N        E+ I     ++
Sbjct: 571 VPLLGKLFGNENKVHGSRELVIVLRARVL 599


>gi|315186870|gb|EFU20628.1| type II and III secretion system protein [Spirochaeta thermophila
           DSM 6578]
          Length = 696

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 100/248 (40%), Gaps = 13/248 (5%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQI--GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
             + Q+   + + + ++            S+T +S            G  VS G D   +
Sbjct: 438 RPQPQIRYDILVVQYQKSEGSDWSRNLDVSLTDTSVEQEPFSLVGSMGNLVSLGIDVVSE 497

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTG--- 303
                ++F + L+     +     A  TLTA+SG+  SF +     Y+   V   TG   
Sbjct: 498 F---GYTFASQLNLKLEESRANIYAHTTLTALSGKDVSFQNTSTFRYRDLEVDPDTGELL 554

Query: 304 ATSVTTH-DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTV 360
           +T V      G +L+    V   G I + I   +SE     +     +P    R   T +
Sbjct: 555 STGVIRELTSGFILNLGGWVSGDGMITMNISATLSERSSESSDSTSAIPPTTERVVSTFL 614

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              SG  + ++GL++    ++   +P+L  IP+LG LFRNS+   E+ E+ I   P ++ 
Sbjct: 615 RTDSGKPVSISGLVQKKKTKIVNKVPVLGDIPLLGFLFRNSQEKEEDMEMVIYVVPRVMD 674

Query: 421 PVAMRDLS 428
              + +  
Sbjct: 675 SFLLTEAP 682


>gi|126441103|ref|YP_001059995.1| Type II secretory pathway, component PulD [Burkholderia
           pseudomallei 668]
 gi|126220596|gb|ABN84102.1| type II secretory pathway, component PulD [Burkholderia
           pseudomallei 668]
          Length = 394

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 81/226 (35%), Gaps = 20/226 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++  + EV +       FQ ++         S  +          GD S    L   
Sbjct: 178 QVAVRAWVYEVSKQEDNNSAFQLALRLLGGRVGASIGSG-------TIGDDSNAIRLRAG 230

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTT 309
            FE  + AL   +  R +  P L   SGQ A    G             +S     SV  
Sbjct: 231 GFEAAIAALNSDSRFRVVTSPNLRVRSGQLARLNVGQSVPVVGSVSYPSASGAPVQSVQY 290

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTI 368
            D GV+    PTV +   I L +  E+S+ V       + P+   RK +++  +  G  +
Sbjct: 291 QDAGVIFQVQPTVKAS-AIDLNVIEEISDFVRTTTGVNNSPTKNTRKLESSFSVEDGDAV 349

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           ++ GL +D    L  G+  L       +  R    N   TEI +  
Sbjct: 350 LIGGLTQDKESHLDSGLSFLP------SWMRGRASNSSRTEILLLL 389


>gi|88809802|ref|ZP_01125308.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 7805]
 gi|88786186|gb|EAR17347.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 7805]
          Length = 765

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 32/200 (16%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISG-----------------------QSASFTSGG 291
            F   L A  ++++ + LA PTL    G                         A  + G 
Sbjct: 543 QFFDFLRAQIQSSSTKVLASPTLIIQEGDDESLGSDDRSISSDGKVGRSRSNEALVSVGT 602

Query: 292 QHLYKTVSSSTGATSV----TTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPV---IGV 343
           + +           ++       + G+        +   G +   +  EVS      +  
Sbjct: 603 RLVTSYRVRQDDNANIFCEPVFKNAGLTFGARVDRIDDNGFVTFSLSPEVSAETGIRVIE 662

Query: 344 NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           N G++     R+ DT  + +  G T+VL G+++D   Q     P+L  IP +G  FR+S 
Sbjct: 663 NCGNISLINSRELDTGKIRVRDGQTLVLTGVIQDSDVQAVTKWPILGDIPFIGQFFRSSG 722

Query: 403 FNREETEIFIAATPFLVKPV 422
            +R + E+ I  TP ++   
Sbjct: 723 GSRTKRELVILVTPRIIDDT 742


>gi|124024476|ref|YP_001018783.1| general (type II) secretion pathway protein D precursor
           [Prochlorococcus marinus str. MIT 9303]
 gi|123964762|gb|ABM79518.1| possible general (type II) secretion pathway protein D precursor
           [Prochlorococcus marinus str. MIT 9303]
          Length = 849

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFET 258
            +       Q     S  G +   + + + +         G ++ +          +F  
Sbjct: 578 LDATSSSDSQNQTSTSNNGQNQTSASNNSQNQTSTSTQNRGTYNRRRNPGLGYPNQAFYD 637

Query: 259 VLHALERATAIRTLAEPTLT------AISGQ-------SASFTSGGQHL--YKTVSSSTG 303
            L A   +T  + LA PTL        I+G+        A    G + +  ++  +   G
Sbjct: 638 FLRAQIESTNTKVLASPTLILSESNETIAGEIGRKNANEAYVRLGDKVVTAFEITTDQNG 697

Query: 304 AT--SVTTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKAD 357
                 T    G+ L      +   G +   ++  +S  V   + G+   + +   R  +
Sbjct: 698 NVYCEPTFETAGLSLGAKVSKIDDNGFVTFSLEPNLSAKVGEQDQGECGLISTVNERLLE 757

Query: 358 T-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           T  V +  G T++L G++ D   Q+    P+L  IP++G  FR++   + ++E+ I  TP
Sbjct: 758 TGAVRVRDGQTLILTGVISDRDIQVVTKWPILGDIPVIGQFFRSTNGTKSKSELVIMVTP 817

Query: 417 FLVKP 421
            ++  
Sbjct: 818 RIIDD 822


>gi|167621192|ref|ZP_02389823.1| Type II secretory pathway, component PulD [Burkholderia
           thailandensis Bt4]
          Length = 400

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 79/228 (34%), Gaps = 20/228 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           +V ++  + EV     +   F  + +     P       +GGK     G         RF
Sbjct: 180 EVVVRGWVYEVSNINSRNSAFSIAASLFGGIP------GWGGKLSLSNGATDADPTALRF 233

Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-----KTVSSSTGATS 306
           S    +  + AL+  +  R +++P +  +SG+      G Q            S T   S
Sbjct: 234 SSSMLDVAISALDADSRFRQISDPHVRVVSGERVRLNVGAQVPTLGSISYQGQSGTPVQS 293

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V   D G++    P V+         +   S         + P+   R+  T V +  G 
Sbjct: 294 VEYQDAGLIFDVQPVVMGDVVQVRLAEQLSSFVTTTTGVNNSPTKNTREMSTVVNMKDGE 353

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            +VL GL++D     +  I  L       + F     ++  TE+ +  
Sbjct: 354 VVVLGGLVQDQDTSSRNSIGWLP------SFFDGKSGSKGRTEVLLVL 395


>gi|225874164|ref|YP_002755623.1| hypothetical protein ACP_2600 [Acidobacterium capsulatum ATCC
           51196]
 gi|225791968|gb|ACO32058.1| hypothetical protein ACP_2600 [Acidobacterium capsulatum ATCC
           51196]
          Length = 612

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 14/228 (6%)

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           + E+    L + G   +I G           DF   FV  GG  +  G        T  +
Sbjct: 376 VQEIISSGLAKAGDWETIIGILLAAGDISGTDFNNPFVIFGGGITETGAEWN---TTAAN 432

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---------SSSTGATSVTTHDY 312
            L  ++ + +L +  L+    + A+F  G ++   T           S+  +      + 
Sbjct: 433 MLLTSSNVISLDQVQLSVRDQKEATFLDGERYPIMTGKLSNLGNLGESTGTSPQFQYVNL 492

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G+ L  TP++ +   + L ++ ++S  + G    D+P    R+    V + +G + ++  
Sbjct: 493 GLTLKVTPSIQANKNVTLHMKLQLSG-LAGTTLDDIPVLTNRQYSGEVSIHAGYSALIVS 551

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +         G+P LS+IP L  +  N   +  + E+ I  TP +++
Sbjct: 552 SMSKQNNLDLTGMPGLSEIPDLHDM-TNRDTSSSDQELVILVTPHIIR 598


>gi|33864362|ref|NP_895922.1| general (type II) secretion pathway protein D precursor
           [Prochlorococcus marinus str. MIT 9313]
 gi|33641142|emb|CAE22272.1| possible general (type II) secretion pathway protein D precursor
           [Prochlorococcus marinus str. MIT 9313]
          Length = 774

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 24/191 (12%)

Query: 255 SFETVLHALERATAIRTLAEPTLT------AISGQ-------SASFTSGGQHL--YKTVS 299
           +F   L A   ++  + +A PTL       +ISG+        A  + G + +  YK V 
Sbjct: 560 AFYDFLRAQIISSNTKVMASPTLILSESPESISGEIGRSKANEAQVSIGDKIITSYKIVQ 619

Query: 300 SSTGAT--SVTTHDYGVVL-HFTPTVLSPGRIGLRIQTEVSEPV-----IGVNAGDMPSY 351
            + G         + G+ L      +   G +   ++ ++S  V      G   GD+ + 
Sbjct: 620 DANGNAYCEAGFDNAGLTLGAMVSKIDDNGFVTFTLEPDLSAVVGQPISTGGKCGDVRTV 679

Query: 352 RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             R+ +T  V +  G T++L G++ D   ++    P+L  IP++G  FR+S  +R++ E+
Sbjct: 680 NSRRLETGAVRVRDGQTLILTGVISDSDTEVVTKWPILGDIPLIGQFFRSSSGSRKKNEL 739

Query: 411 FIAATPFLVKP 421
            I  TP ++  
Sbjct: 740 VIMVTPRIIND 750


>gi|119489367|ref|ZP_01622147.1| general secretion pathway protein D [Lyngbya sp. PCC 8106]
 gi|119454640|gb|EAW35786.1| general secretion pathway protein D [Lyngbya sp. PCC 8106]
          Length = 800

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 18/204 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-------T 308
           F   L    +    + L +PTL    G+ A        + +  + +     V        
Sbjct: 596 FLQTLQFEIQNRNAKILTDPTLLVQEGEIARVELVENIVKRFNTDTIDNNGVQRTERQPE 655

Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------YRVRKADT-TV 360
             D G+ +      V   G + + +   V+     +N G +           R+  +  +
Sbjct: 656 FEDVGLEVSINVERVDDNGFVTINVNPVVTAITNRINIGGVTGEDFVTETSRREYQSGRI 715

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G T++++G++++  +     IP L  +PILGALFR+S       E+ +  TP +  
Sbjct: 716 RLRDGQTLIVSGIIQEQDRVTASKIPFLGDLPILGALFRSSTRETGRAEVVVLVTPMI-- 773

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFF 444
            +   D +     Y+V  DA+   
Sbjct: 774 -MDESDRAPFGYEYNVSPDAREML 796


>gi|237750361|ref|ZP_04580841.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229373891|gb|EEO24282.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 756

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 24/233 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADFGGKFVSEGGDFSVKGVLDR 253
           QV + V I  +       +G       S   P+  S    FGG     GG     G  + 
Sbjct: 521 QVAIDVEILSLIHFQTNNVGIDWQQIFSILNPTQSSLNIAFGG-----GGAMLTLG-NNN 574

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----------VSSSTG 303
              +++ + L     +R+L+ P + A++ Q A  + G    Y             +    
Sbjct: 575 ADLQSIFNLLRTYGDLRSLSNPKIMALNNQPALISVGSVLRYTQNLVYQSNNTNTTIQNT 634

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDM---PSYRVRKAD 357
           +T   +   G++L  TP++     + LRI   ++   +P +   A  +   P+    +  
Sbjct: 635 STQYPSVFAGILLDITPSISHD-SVILRINPSITKTKDPDMENAAEALKAPPNLSTNQLS 693

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           + V+L  G  +++ GLL + +Q   + IP + +   L  +F          E+
Sbjct: 694 SIVKLKDGERVIIGGLLNNVVQNTSQAIPKIGENKWLKNIFGKQSRTNRSEEL 746


>gi|87123518|ref|ZP_01079369.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. RS9917]
 gi|86169238|gb|EAQ70494.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. RS9917]
          Length = 771

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 32/199 (16%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISG-----------------------QSASFTSGG 291
            F   L A   +++ + LA PTL    G                         A    G 
Sbjct: 549 QFFDFLRAKIESSSTKVLASPTLVLQEGGEKSMGTDKGKISEDGKIGREYSNEAYVRVGT 608

Query: 292 QHL--YKTVSSSTGATSVTTHDYGVVLHFTPT---VLSPGRIGLRIQTEVSEPVIGVNAG 346
           Q +  Y+      G            L F      +   G I   +  E+S PV     G
Sbjct: 609 QFVTSYEVKQDINGNNFCQPVFANAGLTFGARVDKIDDNGFITFALSPEISAPVGSEQVG 668

Query: 347 D---MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +   +     R  DT  + +  G T++L G++ D  +++    P+L  +P +G  FR+S 
Sbjct: 669 NCGAITIINDRSLDTGKIRVRDGQTLILTGVINDTDREVVSKWPILGDLPFVGQFFRSSG 728

Query: 403 FNREETEIFIAATPFLVKP 421
             R ++E+ I  TP ++  
Sbjct: 729 GQRSKSELVILVTPRIIDD 747


>gi|222100907|ref|YP_002535475.1| Secretin/TonB, short N-terminal domain precursor [Thermotoga
           neapolitana DSM 4359]
 gi|221573297|gb|ACM24109.1| Secretin/TonB, short N-terminal domain precursor [Thermotoga
           neapolitana DSM 4359]
          Length = 380

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 94/232 (40%), Gaps = 13/232 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           + +N +++  E+++ L+V + EV  + L++ G     +  S G  ++F  +   K +   
Sbjct: 153 ETLNTIDVP-EEELILEVKVVEVNEETLRKWGISWQYSNQSEG--ENFTINLLEKALDIV 209

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            +     VL                + + LA P L   SG S  F++  Q  Y T  +  
Sbjct: 210 FNTLDYSVLSHIELSI------GDGSAKLLANPRLRLQSGSSGKFSAKTQRNYITTENDK 263

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
               V + + G  +   P +L    + L ++   S  +       +P    +  + TV L
Sbjct: 264 KV--VKSVELGTEVEIKPFLLRDNTVSLTVKITSSNALDKNEG--LPDTTSQSIEGTVRL 319

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             G T+ + G+  D    + + +PLL  IP+ G LF+     +   EI I  
Sbjct: 320 KLGETVAIGGIGFDTYTTVTDKVPLLGDIPVFGYLFKKETERKIHKEILILV 371


>gi|284009077|emb|CBA76056.1| general secretion pathway protein D [Arsenophonus nasoniae]
          Length = 221

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 5/194 (2%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++  + E          F       S+          G    S GG F   G+  
Sbjct: 33  RTQVLIESIMFETTDGSNFNFSFGVGKKSGSTVVGGVNTTTLGDILSSSGGSF---GIFS 89

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
                  L A++     + L+ P +  +SGQ+    +G   + + V       ++   D 
Sbjct: 90  GNVLGLALTAVQGDKHSKLLSVPRILTLSGQNVPIVTGK-IIGQGVDVKNPFQTIERRDV 148

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G+ L  TP VL+   + L ++++        NA D+  +  R  DTTV+L +G T+++ G
Sbjct: 149 GISLDVTPVVLNGDSVMLTVKSKADSVSNISNATDI-VFNQRSIDTTVQLKNGDTLLIGG 207

Query: 373 LLKDDIQQLKEGIP 386
           L++ +       +P
Sbjct: 208 LIQHNAVNSTSSVP 221


>gi|167575154|ref|ZP_02368028.1| putative bacteriophage-related lipoprotein [Burkholderia
           oklahomensis C6786]
          Length = 446

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 122/324 (37%), Gaps = 22/324 (6%)

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           D +   + ++ + R       +LR  + +  I    +    V+      +    +     
Sbjct: 126 DSRARADQEVFVYRPRYRSAESLRSLV-EPVIGSRSMMPMSVIAATPPAVTSPVQVPGAP 184

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV-TLKVTIAEVRRD----ILKQIGFQHSI 219
            +  S       A     +   L+ +   D+V  L+  + E+       +++   ++ + 
Sbjct: 185 ISTASDIAAAPVAVGVQARGNELVIVGSHDEVAMLRKLVPELDTAPGEVVVRGWVYEVAN 244

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPT 276
           TGS++           G+     GD +      RF+    +  + AL   +  + ++ P 
Sbjct: 245 TGSANSAWSIAVRLLSGQLRLSSGDTASDTSAMRFTGPGVDAAISALNADSRFKVVSSPH 304

Query: 277 LTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +  +SG+      G Q   ++      S+ T   S+T  D G++    PTV+    I L+
Sbjct: 305 VRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQDAGLIFDVEPTVMRD-VIELK 363

Query: 332 IQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           ++ E+S+ V      D  P+   R+  T   L  G  +VL GL++D     + G   L  
Sbjct: 364 VREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDATARSGYSWLP- 422

Query: 391 IPILGALFRNSRFNREETEIFIAA 414
                + F     +++ TE+ +  
Sbjct: 423 -----SFFDGRSSSKQRTEVLLVL 441


>gi|153827975|ref|ZP_01980642.1| VcsC2 [Vibrio cholerae 623-39]
 gi|148876556|gb|EDL74691.1| VcsC2 [Vibrio cholerae 623-39]
          Length = 467

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 102/291 (35%), Gaps = 16/291 (5%)

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN- 186
           +     +   +      +   G  + I D +      +  LS+  R           +  
Sbjct: 169 QATFPGAQSLIASAITNI---GQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQA 225

Query: 187 ------LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
                 LL     D+V L   IA +     +Q+ F   +   S+   + F  D      S
Sbjct: 226 LPGSNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGS 285

Query: 241 EG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
            G  D  V    +   F    HAL      R + E  L  +  Q   F  G +       
Sbjct: 286 RGIYDLVVPPFTETTDFLRNFHALTSNGIARGVYETNLLVLENQQGHF--GKKQTATIAL 343

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKA 356
            S         +    L+ T  +L  G +  RIQ     + +     N+   P    +  
Sbjct: 344 ISNRQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDKESDNSNRPPKVSSQSL 403

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           ++ V +  G TI+L G      QQ+K GIP+LS IP+LG LF+++   + +
Sbjct: 404 NSEVYIKPGQTIILGGFDNTVTQQMKSGIPVLSSIPLLGELFKSTSEVKSK 454


>gi|330890298|gb|EGH22959.1| general secretion pathway protein D [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 356

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 76/225 (33%), Gaps = 28/225 (12%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +A   + T L  +    Y N   ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 135 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 191

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
               +           G    + G                 G  ++ G+ +    + +  
Sbjct: 192 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 251

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T S  TG          +V   + G
Sbjct: 252 ALKSKGGSNVLSTPNLLTLDNEAASIFFGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 311

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           + L+  P +   G + L I  EVS      +         R  DT
Sbjct: 312 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDT 356


>gi|153212013|ref|ZP_01947830.1| VcsC2 [Vibrio cholerae 1587]
 gi|124116809|gb|EAY35629.1| VcsC2 [Vibrio cholerae 1587]
          Length = 461

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 61/291 (20%), Positives = 101/291 (34%), Gaps = 16/291 (5%)

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN- 186
           +     +   +      +   G  + I D +      +  LS+  R           +  
Sbjct: 163 QATFPGAQSLIASAITNI---GQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQA 219

Query: 187 ------LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
                 LL     D+V L   IA +     +Q+ F   +   S+   + F  D      S
Sbjct: 220 LPGSNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGS 279

Query: 241 EG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
            G  D  V    +   F     AL      R + E  L  +  Q   F  G +       
Sbjct: 280 RGIYDLVVPPFTETTDFLRNFQALTSNGIARGVYETNLLVLENQQGHF--GKKQTATIAL 337

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKA 356
            S         +    L+ T  +L  G +  RIQ     + +     N+   P    +  
Sbjct: 338 ISNRQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDKESDNSNRPPKVSSQSL 397

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           ++ V +  G TI+L G      QQ+K GIP+LS IP+LG LF+++   + +
Sbjct: 398 NSEVYIKPGQTIILGGFDNTVTQQMKSGIPVLSSIPLLGELFKSTSEVKSK 448


>gi|134093313|ref|YP_001098388.1| putative secretion pathway protein [Herminiimonas arsenicoxydans]
 gi|133737216|emb|CAL60259.1| putative bacterial secretion pathway protein [Herminiimonas
           arsenicoxydans]
          Length = 656

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 7/216 (3%)

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           ++L  +  Q     +++      +    G         +    +   S+   + A   ++
Sbjct: 360 NLLSALTLQLGSGSTAAYSRIVTSNSLNGAKPDVSTAITRAVSIPALSYSLNI-ANANSS 418

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-GATSVTTHD--YGVVLHFTPTVLS 324
               LA PTL AI G  + F SG       VS+S  G T++   D  +G+ L  TPT L 
Sbjct: 419 VNEVLARPTLAAIEGLPSEFFSGTNLSAGLVSTSQQGGTTIVPLDKRFGIKLSVTPTFLP 478

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            GR+ L+I+ + +          +          A+  V +  G T++L+GL +      
Sbjct: 479 QGRVQLKIEAQRTALNASSETSRVAYQIEIGELTANANVVMNLGETLLLSGLSEKTRTST 538

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           ++G+P L  +P++  LF N + N  +    I  TP 
Sbjct: 539 RDGVPGLQDVPVVQYLFSNKKTNDLQRSALILITPR 574


>gi|301019450|ref|ZP_07183622.1| bacterial type II and III secretion system protein [Escherichia
           coli MS 196-1]
 gi|299882211|gb|EFI90422.1| bacterial type II and III secretion system protein [Escherichia
           coli MS 196-1]
          Length = 358

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 108/286 (37%), Gaps = 25/286 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           +L G V    ++  AV   ++    SG + Y N +   ++       ++ + +  T+   
Sbjct: 66  ILGGYVSGSFNNSGAVISDDSLKGSSGASNYINRTGDILV---YYGTKEDIAILKTLVTS 122

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------LDRFSFET 258
              +  ++     +    +  S         K +S+  + SV          +   S + 
Sbjct: 123 LDTMSDEVVVSGYVFEVQTSQSDGSGILLAAKILSDKFNISVGAAGLDNFINIRTGSIDA 182

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTTHDYGVV 315
           + + L+  +    ++ P L   +  SASF+ G         TV+++T   SV     GV+
Sbjct: 183 IFNLLKTDSRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVL 242

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            + TP++ S   + L+IQ ++S  V       + P+   R   T V L  G  I+L GL 
Sbjct: 243 FNVTPSIKSR-TMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLA 301

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +    +   G           ++F +      +T+I +      V 
Sbjct: 302 EQKDSKASSGW----------SVFGSRTSESNKTDIMVMLQVRKVD 337


>gi|330959534|gb|EGH59794.1| putative type II and type III secretion system pilus protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 550

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 107/294 (36%), Gaps = 19/294 (6%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           ++ G+  + +       +    +  +G          + +          V ++V   +V
Sbjct: 254 MIGGLGNSEEAPAYIEGIRSVGIVTAGGKPSKMKVLDRYLKRAIEESTKVVNVQVEAYDV 313

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGV--LDRFSFETVLHA 262
                KQ G   ++  +S+        +F     +    F +VKG     + +   ++  
Sbjct: 314 LLTDGKQKGIDWNLLVNSTVSGNPLGLNFFNTSPTSDDPFWNVKGTYSSSKVTASALVKF 373

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATSVTTH----DYGV 314
           LE+   +    +P +T  +G  A   +G +  Y          +G  +VT        GV
Sbjct: 374 LEQYGRVELKDQPNITVRNGVPAQIYAGEELTYIVDVEQSQDESGNVTVTPKLGRLKVGV 433

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
            L  T  VL   ++ + +   +S         IG  + + P   +++  T +   SG ++
Sbjct: 434 TLSVTVRVLDNDQLLVDVWPVISNLNDPDTINIGDYSFNTPRVNLKEFSTQLITSSGQSV 493

Query: 369 VLAGLLKDDIQQLKEGIPL--LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L GL+   + +    +P   L    IL  L +    + E  E+ +  TP LV+
Sbjct: 494 HLGGLITKRMNEAMRQLPWQNLVTKAILNPLTQGINNSLERRELVLVVTPTLVQ 547


>gi|157159048|ref|YP_001462784.1| type II/III secretion system protein [Escherichia coli E24377A]
 gi|157081078|gb|ABV20786.1| type II/III secretion system protein [Escherichia coli E24377A]
          Length = 406

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 91/267 (34%), Gaps = 15/267 (5%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
              + + +AV     F+S SG       ++++V  L+         + V   EV      
Sbjct: 146 ANGEQTWQAVSSGTRFISASGDVFVFRGTAREV-ELVRQLLPQ---IDVRAQEVSVAGYV 201

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                    GS    +    +      +S          L   S + +       +  + 
Sbjct: 202 FEVQTSERNGSGLALAAELLSGRFSITMSSASGLDNFIRLSTGSVDAMYELFRTDSRFQV 261

Query: 272 LAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           ++ P L  ISG+ A F+ G         +        SV     G +    PTV     I
Sbjct: 262 VSSPRLRVISGKEAVFSVGSDVPVLSSVSWQDKVPVQSVEYRSSGAIFRVKPTVTQD-VI 320

Query: 329 GLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           GL I  ++S          + P+   R+  T+V L  G  IVL GL ++   + + G+  
Sbjct: 321 GLDIVQQLSNFAKTDTGVNNTPTLIKREVSTSVSLNDGDIIVLGGLAENKTSKARTGLSF 380

Query: 388 LSKIPILGALFRNSRFNREETEIFIAA 414
           L  +      F +    R +T+I +  
Sbjct: 381 LPDV------FGSDSDERAKTDIIVVL 401


>gi|317968183|ref|ZP_07969573.1| general (type II) secretion pathway protein D precursor
           [Synechococcus sp. CB0205]
          Length = 729

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 121/379 (31%), Gaps = 104/379 (27%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG-------------- 192
           + G  +T Q  +  +  +ET+ + +G  +    ++   +  + + G              
Sbjct: 327 VAGGEQTQQTKKEEITTTETYGASTGPLRGLIGTTDSRLRTITLVGDSQLVSVAENYLRQ 386

Query: 193 ----EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---FAADFGGKFVSEGGDF 245
               + QV L V I +V  +    +    +    S+        F   FGG    +G  F
Sbjct: 387 IDLRQRQVALSVKILDVTLNNDTSLSNSFAFRSGSNFVVSDRGEFLGAFGGLLPPQGDQF 446

Query: 246 SV------------------------------------------KGVLDRFSFETVLHAL 263
           S                                            G  + +++   +  L
Sbjct: 447 STIAGGAASAKSETVTATGQQATVATSEIPANSPAPINPGFAYPSGSANNYNYFDFVRGL 506

Query: 264 ERATAIRTLAEPTLTAISGQS-----ASFTSGGQ-------------------------- 292
             +   + LA PTL            A+ T GG                           
Sbjct: 507 IESNTTKVLASPTLIINENSEPIASGAAVTVGGSGTAALNTASIGRPFANESFVTVGAQE 566

Query: 293 -HLYKTVSSSTGATSVTTHDYGV-VLHF---TPTVLSPGRIGLRIQTEVSEPVIG----V 343
              Y   +   GA +    ++G   L F      +   G +   +  E+S  +       
Sbjct: 567 IVSYTVQAGQNGAPNSCQPEFGTAGLTFGARVSRIDDNGFVTFSMSPEISAVIATDVRIE 626

Query: 344 NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             G + +   R+ DT  V +  G T++L G++ D  Q +    P+L  IP +G  FR+S 
Sbjct: 627 GCGTVNTLTTRRLDTGEVRVRDGQTLILTGVISDYDQAVVRKWPVLGDIPFVGQFFRDSI 686

Query: 403 FNREETEIFIAATPFLVKP 421
             RE+ E+ I  +P +++ 
Sbjct: 687 NRREKRELVILVSPRIIRD 705


>gi|160875361|ref|YP_001554677.1| YscC/HrcC family type III secretion outer membrane protein
           [Shewanella baltica OS195]
 gi|160860883|gb|ABX49417.1| type III secretion outer membrane pore, YscC/HrcC family
           [Shewanella baltica OS195]
 gi|315267560|gb|ADT94413.1| type III secretion outer membrane pore, YscC/HrcC family
           [Shewanella baltica OS678]
          Length = 491

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 96/263 (36%), Gaps = 31/263 (11%)

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192
           V + G+V  +++  +  +++               ++    N + + G            
Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259

Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                    + + V+I +V     KQ+G   S +    G S SF +        +  D  
Sbjct: 260 RQLDTKPSMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
              + +  +F   L+ALE+ +  + L+ P++  ++   A         + T         
Sbjct: 313 STVIGNTGNFMMRLNALEKNSKAKVLSRPSVVTLNNVQAVLD--KNVTFYTKLEGDKVAK 370

Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVEL 362
           + +   G +L  TP ++       + L +  +  +    V+  + +P  +  +  T   L
Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430

Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385
            SG +++L G ++D  +  +  I
Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453


>gi|32471490|ref|NP_864483.1| general secretory pathway protein D [Rhodopirellula baltica SH 1]
 gi|32443331|emb|CAD72164.1| similar to general secretory pathway protein D [Rhodopirellula
            baltica SH 1]
          Length = 1161

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 97/313 (30%), Gaps = 78/313 (24%)

Query: 183  KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------SITGSSSGPSKSFAAD 233
             ++  L      Q+T++V    +     +QIG             + G  SGP  +   D
Sbjct: 831  DLLESLRRLQNLQITIEVRFITLSDTFFEQIGIDFDLQFDDNAPGLPGDDSGPEITIGLD 890

Query: 234  FGGKFVSE-------------------GGDFSVKGVLDRFSFET--VLHALERATAIRTL 272
              G   ++                    G  S  G       E    L A +  +    +
Sbjct: 891  GDGTPTADLDIRLDQNSGATVPFGAPDAGAISTLGFAILSDIEAYFFLQAAQGDSRTNVM 950

Query: 273  AEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTHDY------GVVLHFTPTVLSP 325
              P +T   GQ AS        + T +    G  +V           G  L+    V   
Sbjct: 951  QAPKVTLFDGQIASIQDQTSRPFVTSIVPVVGDFAVAQQPVIVVLDEGTRLNVQGVVSED 1010

Query: 326  GR-IGLRIQTEVSEP----------------------------------------VIGVN 344
             R + L +    S+                                         V    
Sbjct: 1011 KRFVRLTLIPTFSQIGEVNEFTFQGNSTTRNTSNRNVDTNGDGVIDEEDEQEEESVTQGT 1070

Query: 345  AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
                P++     +TTV +P GGTI+L G+ +    + + G+P LSKIP +  LFRN+   
Sbjct: 1071 TVQQPTFAFTTVNTTVSVPDGGTILLGGIKRMSEGRNERGVPFLSKIPYVSRLFRNTAVG 1130

Query: 405  REETEIFIAATPF 417
            RE   + +  TP 
Sbjct: 1131 RESRSLMMMVTPR 1143


>gi|318605712|emb|CBY27210.1| putative phage-related secreted protein [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 420

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 83/234 (35%), Gaps = 19/234 (8%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              ++V +   + EV+              GS    +    +      +   G F     
Sbjct: 186 TASEEVIVAAYVFEVQTSER---------NGSGLALAAKLLSGKLNIQIGASGGFDNFIR 236

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSV 307
           ++  S + +       +    ++ P L    G SA+F+ G +       + + +    S+
Sbjct: 237 VNTGSLDALYELFRTDSRFHVVSSPRLRVKDGASATFSVGNEVPVLGQVSYADNRPIQSI 296

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGG 366
                GV+L   P + +   I L I+ ++S          + P+   R+ +T V    G 
Sbjct: 297 EYRSSGVILDVKPQIRTDN-IDLVIKQQLSSFAKTDTGVNNSPTLIKREVNTEVSAADGD 355

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            I+L GL +  +     G   L K    G L  +S   + +T+I +      V+
Sbjct: 356 IILLGGLAESKVTNADTGFSFLPK----GWL-TSSSDEKNKTDILVVLQAKKVR 404


>gi|149925492|ref|ZP_01913756.1| Type II secretory pathway component PulD-like protein [Limnobacter
           sp. MED105]
 gi|149825609|gb|EDM84817.1| Type II secretory pathway component PulD-like protein [Limnobacter
           sp. MED105]
          Length = 633

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 95/242 (39%), Gaps = 15/242 (6%)

Query: 191 AGEDQVTLKVTIAEVRR--DILKQIGFQHSITGSSSGPSKSFAA--DFGGKFVSEGGDFS 246
            G   + + V +   +      K +   +++T      + + AA        V+ GG   
Sbjct: 310 GGPRMLLIDVILLSTQELISTSKGVNLLNALTLQLGNVAGNVAAYSRVNNSTVTNGGPAD 369

Query: 247 VKGVLDRFSFETVLH-----ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           V   + R      L      A   ++    LA PTL AI G  + F SG       VS+S
Sbjct: 370 VSTAITRAVTIPALSYSLNIANANSSLNEVLARPTLAAIEGLPSEFFSGTNLSAGFVSTS 429

Query: 302 T-GATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRK 355
             G T+V       G+ L  TP  L  GRI L+++ + +          +          
Sbjct: 430 VQGGTTVVPLEKRIGIKLAVTPVFLPQGRIQLKVEAQRTNLNATTENPRVAYQIEIGETT 489

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A+  V +  G T+VL+GL +      ++G+P L  +P L  LF N R N  +  + I  T
Sbjct: 490 ANANVVMNLGDTLVLSGLSEKSSASNRDGVPGLQDVPGLQYLFSNKRTNDLQRSVLILVT 549

Query: 416 PF 417
           P 
Sbjct: 550 PR 551


>gi|304408552|ref|ZP_07390173.1| type III secretion outer membrane pore, YscC/HrcC family
           [Shewanella baltica OS183]
 gi|307305380|ref|ZP_07585128.1| type III secretion outer membrane pore, YscC/HrcC family
           [Shewanella baltica BA175]
 gi|304352373|gb|EFM16770.1| type III secretion outer membrane pore, YscC/HrcC family
           [Shewanella baltica OS183]
 gi|306911683|gb|EFN42108.1| type III secretion outer membrane pore, YscC/HrcC family
           [Shewanella baltica BA175]
          Length = 491

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 96/263 (36%), Gaps = 31/263 (11%)

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192
           V + G+V  +++  +  +++               ++    N + + G            
Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259

Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                    + + V+I +V     KQ+G   S +    G S SF +        +  D  
Sbjct: 260 RQLDTKPTMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
              + +  +F   L+ALE+ +  + L+ P++  ++   A         + T         
Sbjct: 313 STVIGNTGNFMLRLNALEKNSKAKVLSRPSVVTLNNVQAVLD--KNVTFYTKLEGDKVAK 370

Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVEL 362
           + +   G +L  TP ++       + L +  +  +    V+  + +P  +  +  T   L
Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430

Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385
            SG +++L G ++D  +  +  I
Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453


>gi|253771851|ref|YP_003034682.1| type II and III secretion system protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|242378852|emb|CAQ33644.1| gspD [Escherichia coli BL21(DE3)]
 gi|253322895|gb|ACT27497.1| type II and III secretion system protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253979310|gb|ACT44980.1| general secretory pathway component, cryptic [Escherichia coli
           BL21(DE3)]
          Length = 338

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%)

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           I  EVS      N+   P++  R     V + +G T+VL GLL D  ++    +PLL  I
Sbjct: 195 IHLEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDI 254

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P++G LFR +   R +  + +   P +++   +      + +     + +     +   +
Sbjct: 255 PLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKSKAL 314

Query: 452 YGPKEASEVEGQNYK 466
            G ++   ++   + 
Sbjct: 315 VGSEDLPVLDENTFN 329


>gi|53720957|ref|YP_109943.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei K96243]
 gi|52211371|emb|CAH37360.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei K96243]
          Length = 458

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 16/215 (7%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALER 265
           +++   ++ + T S++           G+     GD S      RF+    +  + AL  
Sbjct: 246 VVRGWVYEVANTDSANSAWSIAVRLLSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNA 305

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTP 320
            +  + ++ P +  +SG+      G Q   ++      SS T   S+T  D G++    P
Sbjct: 306 DSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEP 365

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           TV+    I L+++ E+S+ V      D  P+   R+  T   L  G  +VL GL++D   
Sbjct: 366 TVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDA 424

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             + G   L       + F     +++ TE+ +  
Sbjct: 425 TARSGYSWLP------SFFDGRSSSKQRTEVLLVL 453


>gi|153829308|ref|ZP_01981975.1| msha biogenesis protein mshl [Vibrio cholerae 623-39]
 gi|148875208|gb|EDL73343.1| msha biogenesis protein mshl [Vibrio cholerae 623-39]
          Length = 137

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGG 366
           +  TP +   G + L +   V E                  +    +R++D+ +    G 
Sbjct: 1   MDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGD 60

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +V+ GL+K +       +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 61  VVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 113


>gi|126174170|ref|YP_001050319.1| YscC/HrcC family type III secretion outer membrane protein
           [Shewanella baltica OS155]
 gi|125997375|gb|ABN61450.1| type III secretion outer membrane pore, YscC/HrcC family
           [Shewanella baltica OS155]
          Length = 491

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 96/263 (36%), Gaps = 31/263 (11%)

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192
           V + G+V  +++  +  +++               ++    N + + G            
Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259

Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                    + + V+I +V     KQ+G   S +    G S SF +        +  D  
Sbjct: 260 RQLDTKPTMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
              + +  +F   L+ALE+ +  + L+ P++  ++   A         + T         
Sbjct: 313 STVIGNTGNFMLRLNALEKNSKAKVLSRPSVVTLNNVQAVLD--KNVTFYTKLEGDKVAK 370

Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVEL 362
           + +   G +L  TP ++       + L +  +  +    V+  + +P  +  +  T   L
Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430

Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385
            SG +++L G ++D  +  +  I
Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453


>gi|134283528|ref|ZP_01770228.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei 305]
 gi|134245277|gb|EBA45371.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei 305]
          Length = 447

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 16/215 (7%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALER 265
           +++   ++ + T S++           G+     GD S      RF+    +  + AL  
Sbjct: 235 VVRGWVYEVANTDSANSAWSIAVRLLSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNA 294

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTP 320
            +  + ++ P +  +SG+      G Q   ++      SS T   S+T  D G++    P
Sbjct: 295 DSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEP 354

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           TV+    I L+++ E+S+ V      D  P+   R+  T   L  G  +VL GL++D   
Sbjct: 355 TVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDA 413

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             + G   L       + F     +++ TE+ +  
Sbjct: 414 TARSGYSWLP------SFFDGRSSSKQRTEVLLVL 442


>gi|167838357|ref|ZP_02465216.1| putative bacteriophage-related lipoprotein [Burkholderia
           thailandensis MSMB43]
          Length = 420

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 24/260 (9%)

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           V+     L   G +       K V +L    GE  V ++  + EV            SI 
Sbjct: 174 VQARGNELVIVGSHDEVAMLRKLVPDLDTAPGE--VVVRGWVYEVANTDSANSA--WSIA 229

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                     ++   G   S+       G       +  + AL   +  + ++ P +  +
Sbjct: 230 VRLLSGQLRLSS---GDTSSDASAMRFTG----PGVDAAISALNADSRFKVVSSPHVRIV 282

Query: 281 SGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           SG+      G Q   ++      SS T   S+T  D G++    PTV+    I L+++ E
Sbjct: 283 SGEHVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMRD-VIELKVREE 341

Query: 336 VSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +S+ V      D  P+   R+  T   L  G  +VL GL++D     + G   L      
Sbjct: 342 ISDFVATKTGVDTSPTKNTRQLQTVTRLRDGELVVLGGLIQDRDATARSGYSWLP----- 396

Query: 395 GALFRNSRFNREETEIFIAA 414
            + F     +++ TE+ +  
Sbjct: 397 -SFFDGRSSSKQRTEVLLVL 415


>gi|171317904|ref|ZP_02907080.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
 gi|171096911|gb|EDT41783.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
          Length = 460

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 91/257 (35%), Gaps = 25/257 (9%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
              A     +  +L+ +   D+V L   +         ++  +      ++  S + A  
Sbjct: 208 QPVAGGVQARGSDLVIVGSRDEVALLRKVVPELDTAPGEVVVRGWAYEVTNTDSANSAWS 267

Query: 234 FGGKFVSEGGDFSVKGV----------LDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
              K +  GG   +                   +  + AL   +  + ++ P +   SG+
Sbjct: 268 IAAKVL--GGQLRISSGDTSSDSSAVRFTGPGIDAAISALNADSRFKVISSPHVRIASGE 325

Query: 284 SASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
                 G Q   ++      SS T   S+T  D G++    PTV+    I LR+  E+S+
Sbjct: 326 KVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMRD-AIELRVHEEISD 384

Query: 339 PVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            V      D  P+   R+  T   L  G  +VL GL++D     + G   L       + 
Sbjct: 385 FVATKTGVDTSPTKNTRQLQTVTRLKDGEVVVLGGLIQDRNATARSGYAWLP------SF 438

Query: 398 FRNSRFNREETEIFIAA 414
                 +++ TE+ +  
Sbjct: 439 LDGRSSSKQRTEVLLVL 455


>gi|146343920|ref|YP_001201776.1| putative type II and type III secretion system pilus protein
           [Pseudomonas fluorescens SBW25]
 gi|146187732|emb|CAM96060.1| putative type II and type III secretion system pilus protein
           [Pseudomonas fluorescens SBW25]
          Length = 550

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 106/294 (36%), Gaps = 19/294 (6%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           ++ G+  + +       +    +  +G          + +          V ++V   +V
Sbjct: 254 MIGGLGDSEEAPAYIEGIRSVGIVTAGGKPSKMKVLDRYLKRAIEESTKVVNVQVEAYDV 313

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGV--LDRFSFETVLHA 262
                KQ G   ++  +S+        +F          F +V+G     + +   ++  
Sbjct: 314 LLTDGKQKGIDWNLLVNSTVSGNPLGLNFFNTSPKSDDPFWNVQGTYTSSKVTASALVKF 373

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATSVTTH----DYGV 314
           LE+   +    +P +T  +G  A   +G +  Y          +G  +VT        GV
Sbjct: 374 LEQYGRVELKDQPNITVRNGVPAQIYAGEELTYIVDVEQSQDESGNVTVTPKLGRLKVGV 433

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
            L  T  VL   ++ + +   +S         IG  + + P   +++  T +   SG ++
Sbjct: 434 TLSVTVRVLDNDQLLVDVWPVISNLNDPDTINIGDYSFNTPRVNLKEFSTQLITSSGQSV 493

Query: 369 VLAGLLKDDIQQLKEGIPL--LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L GL+   + +    +P   L    IL  L +    + E  E+ +  TP LV+
Sbjct: 494 HLGGLITKRMNEAMRQLPWQNLVTKAILNPLTQGINNSLERRELVLVVTPTLVQ 547


>gi|153951393|ref|YP_001397557.1| type II and III secretion system protein [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152938839|gb|ABS43580.1| bacterial type II and III secretion system protein [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 391

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 105/266 (39%), Gaps = 16/266 (6%)

Query: 160 AVELSETFLSQSGR-----NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
             +++ T+L +S       + +  S  K  ++ L+     Q+  K+TI E   D LK+ G
Sbjct: 128 MYDINSTYLYRSNAVTFLCDDFIYSHIKSSIDDLDNMDLPQLKFKITILETNLDFLKEKG 187

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            + S       P K F        +      ++    D+  F + L+ LE     R ++ 
Sbjct: 188 SKLSSLFQ-GNPIKDFHLFVNLITIPYNSQNNIVSS-DKKGFYSTLNFLENQRITRIVSN 245

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
           P L A S     F+S     +   S+S      +  TS    D G+ +   P ++   ++
Sbjct: 246 PFLLARSNTEVFFSSVQNIPFLKNSTSVSDTRVSQNTSYDYRDVGLQVTLKPVIIGD-KV 304

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
              +   V + +   N+   P    ++  ++  L  G  +VL+G+ K        GIP L
Sbjct: 305 DFSLHLIVEDLLS--NSNLTPVTSKKELKSSYTLKKGELLVLSGINKVTNTNYTSGIPYL 362

Query: 389 SKIPILGALFRNSRFNREETEIFIAA 414
             I  LG LF+  R     + + ++ 
Sbjct: 363 KDIWFLGNLFKIQRKETNNSVLTLSI 388


>gi|170077129|ref|YP_001733767.1| general secretion pathway protein D [Synechococcus sp. PCC 7002]
 gi|169884798|gb|ACA98511.1| general secretion pathway protein D [Synechococcus sp. PCC 7002]
          Length = 788

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 24/206 (11%)

Query: 241 EGGDFSVKGVLDRFSFETVLHA-LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           EG    V       +F   L A L R T  + +A+PTL     ++       Q +     
Sbjct: 556 EGIGTIVPSTTSGTNFIGSLVAGLLRNTTSKIVADPTLIIQENETGELRVTEQIINSVQI 615

Query: 300 SSTGATSVTTHDYGVVLHFTP----------------TVLSPGRIGLRIQTEVSEPVIGV 343
            S    S + +     ++  P                 +   G I L I  EVS P   V
Sbjct: 616 VSGSVNSDSDNGTNNAVNVLPEPVLAEVGLFVPITVENIDDNGFITLNITPEVSAPSEEV 675

Query: 344 -----NAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                 + ++ + + +      +V L    T++LAG + +        +P+L  IPILG+
Sbjct: 676 VFEAGTSRNVLTLKRQSILNSGSVRLRDDQTLILAGAIDERDITTTSKVPILGDIPILGS 735

Query: 397 LFRNSRFNREETEIFIAATPFLVKPV 422
           LFR+S    E  E+    TP ++   
Sbjct: 736 LFRSSSRTNERRELLFIITPQVIDDS 761


>gi|91775810|ref|YP_545566.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91709797|gb|ABE49725.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 395

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 21/228 (9%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              ++V +K  I EV   +                 + S      G  +  G   S +  
Sbjct: 178 RPANEVVVKAYIYEVTNTVRDLNAIS---------AAVSLLNSRLGITIENGATQSNQLK 228

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TS 306
           L   + + ++ A +     + ++ P+L   +G+++ F+ G +      ++ T       S
Sbjct: 229 LSLPNIDVLISAFDSDNRFKQVSAPSLRVKNGKNSRFSVGTETPTIASTTQTNNGNPVQS 288

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSG 365
           +     GV+L  TP +L+   I L I  ++S            P+   R+  T V    G
Sbjct: 289 IIYRPSGVILEITPKILAE-TIELDITQQISSFQPTTTGVNQSPTLLKREIKTVVNTRDG 347

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
             I+L GL +  + + ++G+  L        LF  +  + E+++I + 
Sbjct: 348 ELILLGGLNESRLSKQRQGLSFLP------RLFNANTDSDEKSDILLV 389


>gi|83720458|ref|YP_443762.1| phage-related secreted protein [Burkholderia thailandensis E264]
 gi|83654283|gb|ABC38346.1| probable phage-related secreted protein YPO2280 [Burkholderia
           thailandensis E264]
          Length = 460

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 16/215 (7%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALER 265
           +++   ++ + T S++      A   GG+     GD S      RF+    +  + AL  
Sbjct: 248 VVRGWAYEVTNTDSTNSAWSIAAKVLGGQLRISSGDTSSDKSAVRFTGPGIDAAISALNA 307

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTP 320
            +  + ++ P +   SG+      G Q   ++      SS T   S+T  D G++    P
Sbjct: 308 DSRFKVISSPHVRIASGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEP 367

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           TV+    I LR+  E+S+ V      D  P+   R+  T   L  G  +VL GL++D   
Sbjct: 368 TVMRD-AIELRVHEEISDFVPTKTGVDTSPTKNTRQLQTVTRLTDGEVVVLGGLIQDRNS 426

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             + G   L       +       +++ TE+ +  
Sbjct: 427 TARSGYAWLP------SFLDGRSSSKQRTEVLLVL 455


>gi|304412101|ref|ZP_07393711.1| type II and III secretion system protein [Shewanella baltica OS183]
 gi|307305996|ref|ZP_07585742.1| type II and III secretion system protein [Shewanella baltica BA175]
 gi|304349651|gb|EFM14059.1| type II and III secretion system protein [Shewanella baltica OS183]
 gi|306911489|gb|EFN41915.1| type II and III secretion system protein [Shewanella baltica BA175]
          Length = 487

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 105/286 (36%), Gaps = 10/286 (3%)

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---N 186
               +   +    + +     +   +  +RA +L      +    +   +S  +V+   N
Sbjct: 192 IFPGAQSLISSAIEKIGQFENISDGEMVKRAYKLKLNQNDKQQLEEDEFTSKVQVLPGSN 251

Query: 187 LLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GD 244
            L + G  +++ L   IA +     +Q+ F   +   S   +++   +      S G  D
Sbjct: 252 ALLVRGTPEEIQLAKRIATLIDVKRQQLLFFLRVYDVSVERTEALGVNSSWLNGSRGLYD 311

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
             V    D   F     AL      R + E  L  +  Q   F  G +     V  S   
Sbjct: 312 IIVPPFTDTVDFFKNFQALYTNNMARGVYETNLLVLENQQGHF--GKKETATVVLISDKQ 369

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLR---IQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            S    +    L+ T  +L  G++  +   I+  +S+      A   P    +   + V 
Sbjct: 370 VSTQKIEAENSLYVTGRLLPSGKVQAKFSYIEESLSDDKAEGGATQAPRVNSQSLTSEVY 429

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +  G T++L G        ++ G+P+LS IP LG LF++ +  + +
Sbjct: 430 IEPGQTVILGGFDNTVTDSVESGVPILSSIPWLGELFKSKKETKRK 475


>gi|254430712|ref|ZP_05044415.1| general secretion pathway protein D [Cyanobium sp. PCC 7001]
 gi|197625165|gb|EDY37724.1| general secretion pathway protein D [Cyanobium sp. PCC 7001]
          Length = 849

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 78/247 (31%), Gaps = 45/247 (18%)

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G+ S    S    F  +        +        +F   + A   + + + LA PTL  
Sbjct: 577 NGTVSRTRSSNNGGFSNRLDVASTPGNPGNNYAEDTFYDFVRAQITSGSTKLLASPTLIL 636

Query: 280 ISG---------------------------------QSASFTSGGQHL--YKTVSSSTGA 304
                                                      G   +  Y+  +   G 
Sbjct: 637 QENAAELRGAGITGSTDSPGGLDEYSPDSPIGRRRANEGVVRVGTNVVTNYQVTTPEGGG 696

Query: 305 TSV---TTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRK 355
             V        G+VL      +   G +   +   VS              ++    VR+
Sbjct: 697 NIVCDPEVSTAGLVLGARIEKIDDNGFVTFALSPSVSAITGQEQAPEGCGSNLNILSVRR 756

Query: 356 ADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            DT  V +  G T++L G++ D  + +    P+L  IP++G  FR++   +E+ E+ I  
Sbjct: 757 LDTGAVRVRDGQTLILTGVISDFDRSVVSKWPILGDIPLIGQFFRSTSNQKEKRELVIMV 816

Query: 415 TPFLVKP 421
           TP ++  
Sbjct: 817 TPRIIND 823


>gi|224827067|ref|ZP_03700164.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
 gi|224600733|gb|EEG06919.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
          Length = 427

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 106/311 (34%), Gaps = 38/311 (12%)

Query: 118 RDIAHLEMTLRRFIADSNIRVE--------MVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           RD+A+L   LR    + +  V           S T    G    + D +  V + +   +
Sbjct: 134 RDLAYLTELLRPLFKNGSFTVNRTVRAAPGNASSTPAPSGTAAALIDQKSDVMVFQGTAA 193

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
           +           K+V+  ++ A  + V +K  + EV     +  GFQ ++         S
Sbjct: 194 EIDM-------LKRVLPQVDTAMGE-VLVKGVVYEVSTGQNEASGFQLAL---------S 236

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                 G  +           L   + +  + AL   +  + ++ P L   SG+SAS T 
Sbjct: 237 LLGGKLGVTIGTPPKGDNAITLKTGAIDAAIGALAGDSRFKVVSTPYLRVKSGRSASLTV 296

Query: 290 GGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           G                T   S+     GV+ +  P V     I L +  +VS  V    
Sbjct: 297 GQDVPVLGSVSYPQGGGTPVRSIEYKSSGVIFNIAPQV-RDRTIDLEVSQQVSNFVKTET 355

Query: 345 A-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
              D P+   R+  T V    G  IVL GL  +     + G+  L          R    
Sbjct: 356 GVDDSPTLIKRELRTHVSALDGELIVLGGLRDEKDNASRTGLSFLPD------FLRARSS 409

Query: 404 NREETEIFIAA 414
           +  +TEI +  
Sbjct: 410 SSNQTEILLML 420


>gi|167817938|ref|ZP_02449618.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei 91]
          Length = 403

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 16/215 (7%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALER 265
           +++   ++ + T S++           G+     GD S      RF+    +  + AL  
Sbjct: 191 VVRGWVYEVANTDSANSAWSIAVRLLSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNA 250

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTP 320
            +  + ++ P +  +SG+      G Q   ++      SS T   S+T  D G++    P
Sbjct: 251 DSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEP 310

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           TV+    I L+++ E+S+ V      D  P+   R+  T   L  G  +VL GL++D   
Sbjct: 311 TVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDA 369

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             + G   L       + F     +++ TE+ +  
Sbjct: 370 TARSGYSWLP------SFFDGRSSSKQRTEVLLVL 398


>gi|221271462|dbj|BAH15014.1| putative type III secretion system apparatus protein VscC2 [Vibrio
           parahaemolyticus]
          Length = 488

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 101/292 (34%), Gaps = 17/292 (5%)

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN- 186
           +     +   +      +   G  + I D +      +  LS+  R           +  
Sbjct: 189 QATFPGAQSLIAAAITNI---GQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQA 245

Query: 187 ------LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
                 LL     D+V L   IA +     +Q+ F   +   S+   ++F  D      S
Sbjct: 246 LPGSNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKENFGVDSSWVNGS 305

Query: 241 EG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
            G  D  V    +   F     AL      R + E  L  +  Q   F  G +       
Sbjct: 306 RGVYDLVVPPFTETIDFLRNFQALASNGIARGVYETNLLVLENQQGHF--GKKQTATIAL 363

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ----TEVSEPVIGVNAGDMPSYRVRK 355
            S         +    L+ T  +L  G +  RIQ    +   +     N+   P    + 
Sbjct: 364 ISNRQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDEEDSDNSNRPPRVSSQS 423

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            ++ V +  G TI+L G      QQ + GIP+LS IP+LG LF+++   + +
Sbjct: 424 LNSEVYIKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475


>gi|119510022|ref|ZP_01629163.1| general secretion pathway protein D [Nodularia spumigena CCY9414]
 gi|119465346|gb|EAW46242.1| general secretion pathway protein D [Nodularia spumigena CCY9414]
          Length = 826

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 19/208 (9%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASF-----TSGGQHLYKTVSSSTGATSVT-- 308
               L A  +    + L +PTL    GQ+A         G      T    T + SVT  
Sbjct: 615 LLASLQAQIQNGNAKILTDPTLIVQEGQTADVRLTQEVVGNIIREITRGDGTSSESVTAD 674

Query: 309 THDYGVVLHFTP-TVLSPG-------RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT-T 359
             + G+ L      +   G             Q      + G  +  +     R   + T
Sbjct: 675 KVNVGLTLAVKVDRIDDNGFVSLSVSPSVSSPQAPAEINLGGSGSQRIFLVSTRSLTSGT 734

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T++L+G++++  +     +P+L  +P++G+LFR +    +  E+ +  TP + 
Sbjct: 735 IRLRDGQTLILSGIIQESDRTSVSKLPILGDLPLIGSLFRRTNRQNQRQEVIVLLTPQI- 793

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
             +   + S    +Y+   + +     R
Sbjct: 794 --MDDSENSAYGYNYTPSPEVRQMLERR 819


>gi|327538107|gb|EGF24796.1| protein containing Type II and III secretion system domain
            [Rhodopirellula baltica WH47]
          Length = 1062

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 97/313 (30%), Gaps = 78/313 (24%)

Query: 183  KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------SITGSSSGPSKSFAAD 233
             ++  L      Q+T++V    +     +QIG             + G  SGP  +   D
Sbjct: 732  DLLESLRRLQNLQITIEVRFITLSDTFFEQIGIDFDLQFDDNAPGLPGDDSGPEITIGLD 791

Query: 234  FGGKFVSE-------------------GGDFSVKGVLDRFSFET--VLHALERATAIRTL 272
              G   ++                    G  S  G       E    L A +  +    +
Sbjct: 792  GDGTPTADLDIRLDQNSGATVPFGAPDAGAISTLGFAILSDIEAYFFLQAAQGDSRTNVM 851

Query: 273  AEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTHDY------GVVLHFTPTVLSP 325
              P +T   GQ AS        + T +    G  +V           G  L+    V   
Sbjct: 852  QAPKVTLFDGQIASIQDQTSRPFVTSIVPVVGDFAVAQQPVIVVLDEGTRLNVQGVVSED 911

Query: 326  GR-IGLRIQTEVSEP----------------------------------------VIGVN 344
             R + L +    S+                                         V    
Sbjct: 912  KRFVRLTLIPTFSQIGEVNEFTFQGNSTTRNTSNRNVDTNGDGVIDEEDEQEEESVTQGT 971

Query: 345  AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
                P++     +TTV +P GGTI+L G+ +    + + G+P LSKIP +  LFRN+   
Sbjct: 972  TVQQPTFAFTTVNTTVSVPDGGTILLGGIKRMSEGRNERGVPFLSKIPYVSRLFRNTAVG 1031

Query: 405  REETEIFIAATPF 417
            RE   + +  TP 
Sbjct: 1032 RESRSLMMMVTPR 1044


>gi|330882527|gb|EGH16676.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 635

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 75/215 (34%), Gaps = 16/215 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206
           G     +    +  ++    S     +   +  K++ + +        QV ++  I EV 
Sbjct: 414 GANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 473

Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258
                 +G Q  +     +SG + +     G +     G  ++      F      + + 
Sbjct: 474 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 533

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312
            L ALE     + L+ P+L  ++ Q A    G              S++T  +SV     
Sbjct: 534 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 593

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
           GV+L   P +   G + + IQ +VS      N  D
Sbjct: 594 GVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSD 628


>gi|257458871|ref|ZP_05623994.1| bacterial type II and III secretion system protein [Campylobacter
           gracilis RM3268]
 gi|257443859|gb|EEV18979.1| bacterial type II and III secretion system protein [Campylobacter
           gracilis RM3268]
          Length = 389

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 93/250 (37%), Gaps = 15/250 (6%)

Query: 175 QYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFA 231
           + ++     +++ +  + +  +QV  K+TI E   +  K IG   +  G     S  ++ 
Sbjct: 142 KASDDEYSDIIDFVQRSDKKLEQVNFKLTILETNTNDYKDIGSHLNSLGDVVTRSDLNYF 201

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            +      S   +        +  F  VL  L++         P L A SG    F+S  
Sbjct: 202 INLITMPYSAETNVVTT---KKRGFYGVLSLLQQNGVTTIKQSPFLVAKSGAEVYFSSVE 258

Query: 292 QHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
              Y T +S+          S    D G+ +   P VL    +   +   V + +   N 
Sbjct: 259 NVPYLTNTSTYTQNGTATQNSYEYKDVGLKIKIRPVVLQNSNVDFSLDLVVEDLLDTQNT 318

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P    ++  +   L  G  +VL+G+ KD     + G+PLL  IPIL  LF       
Sbjct: 319 LT-PRTSKKELKSNYSLKRGELLVLSGINKDVAYSKRNGVPLLKDIPILKYLFS--IEQN 375

Query: 406 EETEIFIAAT 415
            ++   I  T
Sbjct: 376 YKSTSIITLT 385


>gi|126441183|ref|YP_001060902.1| Type II secretory pathway, component PulD [Burkholderia
           pseudomallei 668]
 gi|126220676|gb|ABN84182.1| type II secretory pathway, component PulD [Burkholderia
           pseudomallei 668]
          Length = 448

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 126/353 (35%), Gaps = 40/353 (11%)

Query: 80  VVHSPRTMYLFGKNVGQA------NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA- 132
            V +   +    K  G A      +V +     +++  L  LIE  I    M L   ++ 
Sbjct: 113 QVVTRNGVDYVTKKPGAAREKVDQDVFVYKPRYRRVDYLRALIEPMIGARAMPLMSPVSV 172

Query: 133 --DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
                  V++  +T    G V      + +V+     L   G +       K V  L  +
Sbjct: 173 PSQPVGAVQVPGETAAPAGDVP-AMPVETSVQARGDDLVIVGSHDEVALLRKVVPELDTV 231

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             E  V ++  + EV            SI                G+     GD S    
Sbjct: 232 PSE--VVVRGWVYEVANTDSTNTA--WSIAVRM----------LSGQLRVSSGDTSSDAS 277

Query: 251 LDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305
             RF+    +  + AL   +  + ++ P +  +SG+      G Q   ++  S  G+T  
Sbjct: 278 AVRFTGPGVDAAISALNADSRFKVVSAPHVRIVSGERVRLNVGQQVPTQSSVSYQGSTGT 337

Query: 306 ---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVE 361
              S+T  D G++    PTV+    I L+++ E+S+ V      D  P+   R+  T   
Sbjct: 338 PVQSITYQDAGLIFDVEPTVMRE-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTR 396

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           L  G  +VL GL++D     + G   L       +       +++ TE+ +  
Sbjct: 397 LKDGEVVVLGGLIQDRNATARSGYAWLP------SFLDGRSSSKQRTEVLLVL 443


>gi|304415540|ref|ZP_07396167.1| type III secretion apparatus protein [Candidatus Regiella
           insecticola LSR1]
 gi|304282604|gb|EFL91140.1| type III secretion apparatus protein [Candidatus Regiella
           insecticola LSR1]
          Length = 360

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 96/292 (32%), Gaps = 21/292 (7%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            VR+    Q     S   L   GR ++  +  K+++  L+   +  + L V I ++ +  
Sbjct: 48  KVRSDIALQVVANPSTNSLLVKGRTEHI-AFVKQLIAQLDQP-KRHIELSVWIIDLEKTA 105

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L              G + +   +  GKF     +      LD   F   + AL +    
Sbjct: 106 LXXXX---XXXXXXLGVNFNVRININGKF-GASFNGGGASTLDGSRFIASIMALSQQNKA 161

Query: 270 RTLAEPT-LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF---------T 319
             ++ P  +       A F +      +         ++ +  YG  +            
Sbjct: 162 NIVSRPDCVLTQENIPAIFDNNRAFYSEVKGDRV--ATLESVTYGTSVSVLXXXXXXXXX 219

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P      +I + +  E    +   +      +P     K  T   +P G ++++ G  +D
Sbjct: 220 PRFAEQSQIEMMLNIEDGNEIAQNDNEIKTSLPKVGRTKISTVARVPKGKSLLIGGYTRD 279

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
                +  IP L  +P +G LFR  +     T       P  ++    RD S
Sbjct: 280 SSNNTEAKIPGLGSLPWVGGLFRYRQSASANTVRVFLIQPREIEGPLSRDAS 331


>gi|328469624|gb|EGF40560.1| putative type III secretion system EscC protein [Vibrio
           parahaemolyticus 10329]
          Length = 488

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 86/226 (38%), Gaps = 7/226 (3%)

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF 245
           LL     D+V L   IA +     +Q+ F   +   S+   + F  D      S G  D 
Sbjct: 252 LLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGVYDL 311

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            V    +   F     AL      R + E  L A+  Q   F  G +        S    
Sbjct: 312 VVPPFSETIDFLRNFQALASNGIARGVYETNLLALENQQGHF--GKKQTATIALISNKQV 369

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQ----TEVSEPVIGVNAGDMPSYRVRKADTTVE 361
                +    L+ T  +L  G +  RIQ    +   +     N+   P    +  ++ V 
Sbjct: 370 ETQKIEADNSLYVTGRLLPSGDVQARIQYVEESLDDDEEDSDNSNRPPRVSSQSLNSEVY 429

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +  G TI+L G      QQ + GIP+LS IP+LG LF+++   + +
Sbjct: 430 IKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475


>gi|148240700|ref|YP_001226087.1| general secretory pathway protein D [Synechococcus sp. WH 7803]
 gi|147849239|emb|CAK24790.1| General secretory pathway protein D [Synechococcus sp. WH 7803]
          Length = 773

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 73/202 (36%), Gaps = 35/202 (17%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISG-----------------------QSASFTSGG 291
            F   L A  ++++ + LA PTL    G                         A  + G 
Sbjct: 550 QFFDFLAAQIQSSSTKILASPTLIIQEGSESTQGSDASKISADGKVGRERTNEALVSVGT 609

Query: 292 QHL--YKTVSSSTGAT--SVTTHDYGVVL--HFTPTVLSPGRIGLRIQTEVSE----PVI 341
           + +  ++      G         + G+         +   G +   +  E+S     P  
Sbjct: 610 KLVTSFEVKQDENGNNFCQPVFSNAGLTFGARVE-KIDDNGFVTFSLSPEISAAVGVPET 668

Query: 342 GVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             N G++     R  DT  + +  G T++L G++ D   Q     P+L  IP +G  FR+
Sbjct: 669 IGNCGNINIINSRTLDTGKIRVRDGQTLILTGVISDTDVQAVTKWPILGDIPFIGQFFRS 728

Query: 401 SRFNREETEIFIAATPFLVKPV 422
           S  +R + E+ I  TP ++   
Sbjct: 729 SSGDRTKNELVILVTPRIIDDT 750


>gi|171911301|ref|ZP_02926771.1| type II and III secretion system protein [Verrucomicrobium spinosum
           DSM 4136]
          Length = 173

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 25/134 (18%)

Query: 314 VVLHFTPTVLSPGR-IGLRIQTEVSE------------------------PVIGVNAGDM 348
           + L   P +   G  I L +  EV+E                          +  N  + 
Sbjct: 2   LRLEVDPVIGPDGYTIDLNLAPEVTEFEGFINYGSPINTASTDALGNPTTVTLTENKIEQ 61

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P +  RK  T V +  G T+ + GL+++D+Q +++ +P+L  +P LG LF++   +  + 
Sbjct: 62  PVFSTRKVTTAVTVWDGQTVAMGGLIREDVQDVEDKVPILGDLPFLGRLFQSKAEDHFKR 121

Query: 409 EIFIAATPFLVKPV 422
            + I  T  L+ P 
Sbjct: 122 NLMILVTAKLIDPS 135


>gi|330951304|gb|EGH51564.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae Cit 7]
          Length = 106

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 47/102 (46%)

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
               RI + ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ 
Sbjct: 1   TPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVV 60

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           + +P L  +P LG LFR    +  ++E+ +  TP ++   A+
Sbjct: 61  DKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 102


>gi|94969549|ref|YP_591597.1| TPR repeat-containing protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551599|gb|ABF41523.1| TPR repeat protein [Candidatus Koribacter versatilis Ellin345]
          Length = 619

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 95/293 (32%), Gaps = 60/293 (20%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           A   QV L V++  V   +  Q+G Q     ++       A        S        G 
Sbjct: 319 ASRPQVALDVSVYRVSGTLTHQLGVQPPNQFTTFNLGSVLAGLGATNLQSLINQIISSGA 378

Query: 251 LDRFSFETVLHALERATAIRT--------------------------------------- 271
           +++ +  T + AL       T                                       
Sbjct: 379 INQAN-GTDISALITQALGNTQLATLFQTPFVTYGGGLTLMALTVPGTTLNLNFSKANFQ 437

Query: 272 -LAEPTLTAISGQSASFTSGGQHLY------------------KTVSSSTGATSVTTHDY 312
            LA   L A    +A+   G ++                    +T +      S    D 
Sbjct: 438 NLAHMQLRASQNNAATMRIGERYPILNATFAPIYNTPQISALLRTGTYVAPFPSFNYEDL 497

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G+ +  TP++     + L ++ ++     G + G MP    ++   T+ L  G   V+  
Sbjct: 498 GLTVKATPSIQGNRDVRLNLEMQMRSLGAGTSNG-MPIINNQEYKGTISLKDGEPGVVVS 556

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            L +   +   GIP L +IP LG+   ++     E+E+ +  TP ++K +  +
Sbjct: 557 YLTESESRSISGIPGLGQIPGLGSAVASTDREGVESELLVIITPHVLKVIEPK 609


>gi|322436034|ref|YP_004218246.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321163761|gb|ADW69466.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 635

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 119/356 (33%), Gaps = 61/356 (17%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD-----------SQRAVELSETFL 168
           +  L   ++       I ++  S ++V+     T++            + + V   + + 
Sbjct: 265 LNELVNIIKNVFDVKQIAIQQNSSSLVVRAPEPTLKAVNYTIADLVDGNAQVVMELKLYT 324

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS- 227
               R +    ++   +   ++A E Q      I    + +++Q   Q   T S +  + 
Sbjct: 325 VDKTRTRNLGLTTPNSVGGFSVAAEAQ-----GIVSANQSVIQQAISQGLFTPSGNAATD 379

Query: 228 ----------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                        A D     +       +            L+     +  R L + T+
Sbjct: 380 TITEAIYLIASGLATDAKLSGLLTLVGGGLTTAGIYVGSNPTLNFALDTSDTRALDDITV 439

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGAT-------------------------------- 305
            +   Q+ +   G ++   T + S+G +                                
Sbjct: 440 RSGDRQTTTLKVGSKYPITTSTYSSGVSAATSSALAGVTVGGVSASSLLNQYLGASSQTI 499

Query: 306 -SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
             +   D G+ L  TPTVL  G I + I  ++ E + G +A ++P    R   + V  P 
Sbjct: 500 PQIQYEDIGITLKTTPTVLKSGLITMHIDLKI-EALTGQSANNIPVLTSRVFTSDVTCPE 558

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T ++   L         GIP L+++P       +    R+ +E+ +  TP LV+
Sbjct: 559 GSTAMMLSQLSSQESAAVSGIPGLAELPGFQTSVADRITERDSSELVMMVTPHLVR 614


>gi|157163911|ref|YP_001467431.1| type II and III secretion system protein [Campylobacter concisus
           13826]
 gi|112801005|gb|EAT98349.1| bacterial type II and III secretion system protein [Campylobacter
           concisus 13826]
          Length = 380

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 12/232 (5%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +QVT K+TI E     +K +G    + G     +    A +     S     S     + 
Sbjct: 155 EQVTFKLTITETNLKDIKDLGTN--LQGLLKPLNHGDLAYYINLITSPYITNSNVIKNND 212

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SV 307
            +F  +L+ L+     + ++ P LTA +     F+S     Y    +           S 
Sbjct: 213 SAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTDSY 272

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              D G+ ++  P +LS   I   +   + E ++  ++   P    ++  ++  L  G  
Sbjct: 273 EYKDIGLKINLKPIILSD-HIDFDLHLIL-EDILSQSSSFTPIVSKKELKSSYSLKRGDV 330

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +VL+G+ K    + + G+P+L  I +L  LF        E    +  T  ++
Sbjct: 331 LVLSGINKKTNAKQRNGVPVLKDIWLLKYLFS--VEQDSEINSVLTLTIQII 380


>gi|229515151|ref|ZP_04404611.1| hypothetical protein VCB_002808 [Vibrio cholerae TMA 21]
 gi|71480608|gb|AAZ32230.1| VcsC2 [Vibrio cholerae non-O1/non-O139]
 gi|229347856|gb|EEO12815.1| hypothetical protein VCB_002808 [Vibrio cholerae TMA 21]
          Length = 485

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 3/222 (1%)

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF 245
           LL    +++V L   IA +     +Q+ F   +   S+   ++   D G    S G  D 
Sbjct: 253 LLVRGTQEEVKLAKRIAALIDVKRRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDI 312

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            V    +   F     AL      R++ E  L A+  Q   F  G +        S    
Sbjct: 313 VVPPFTETTDFLKNFQALYTNGIARSVYETNLLALENQQGQF--GKKQTATLTLISDKEV 370

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
                +    L+ T  +L  G++  RIQ          ++   P    +  ++ V +  G
Sbjct: 371 KTEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDEEGDSNRPPRVSSQSLNSEVYIQPG 430

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            T++L G      QQ + G+P+LS IP+LG LF+ +  ++ +
Sbjct: 431 QTVILGGFDNTVTQQQESGVPVLSSIPLLGELFKYTSESKHK 472


>gi|270637582|ref|ZP_06222100.1| competence protein E [Haemophilus influenzae HK1212]
 gi|270317386|gb|EFA28906.1| competence protein E [Haemophilus influenzae HK1212]
          Length = 90

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 38/70 (54%)

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  ++ +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+
Sbjct: 3   FLKQEINTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKREL 62

Query: 411 FIAATPFLVK 420
            I  TP ++K
Sbjct: 63  VIFVTPHILK 72


>gi|157163960|ref|YP_001466804.1| type II and III secretion system protein [Campylobacter concisus
           13826]
 gi|112801256|gb|EAT98600.1| bacterial type II and III secretion system protein [Campylobacter
           concisus 13826]
          Length = 380

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +QVT K+TI E     +K +G    + G     +    A +     S     S     D 
Sbjct: 155 EQVTFKLTITETNLKDIKDLGTN--LQGLLKPLNHGDLAYYINLITSPYITNSNVIKNDD 212

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SV 307
            +F  +L+ L+     + ++ P LTA +     F+S     Y    +           S 
Sbjct: 213 SAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTDSY 272

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              D G+ ++  P +LS   I   +   + E ++  ++   P    ++  ++  L  G  
Sbjct: 273 EYKDIGLKINLKPIILSD-HIDFDLHLIL-EDILSQSSSLTPIVSKKELKSSYSLKRGDV 330

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +VL+G+ K    + + G+P+L  I +L  LF   + +   + + +  
Sbjct: 331 LVLSGINKKTTAKQRNGVPVLKDIWLLKYLFSVEQDSEINSVLTLTI 377


>gi|320102660|ref|YP_004178251.1| type II and III secretion system protein [Isosphaera pallida ATCC
            43644]
 gi|319749942|gb|ADV61702.1| type II and III secretion system protein [Isosphaera pallida ATCC
            43644]
          Length = 1626

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 34/233 (14%)

Query: 218  SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
            ++       ++  A      FV   G      +L        + A +       +  P +
Sbjct: 1374 NLNIPFVNNTEQAATPTLAGFVPGAGATLGVSILSDLEVYLFMRAAQTDVRSNIIQAPKV 1433

Query: 278  TAISG-------QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IG 329
            T  +G       Q+  F            +      V     G+ L+  P + +  R + 
Sbjct: 1434 TTFNGAFAQVASQTQQFYVASVTPVVAFGAVAFTPDVQPLPIGITLNVQPVITADRRYVR 1493

Query: 330  LRIQT--------------------------EVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            L +                               +         +P++ +   +TTV +P
Sbjct: 1494 LSLNPVFISNASFQQFTVAGGVGGIGGIGGIGGGDGAQIATTIQLPTFTLFTVNTTVTVP 1553

Query: 364  SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
             GGT++L G+   + ++ + G+P+LSK P L  LFRN    R    I +  TP
Sbjct: 1554 DGGTVLLGGVKTSEEERREFGVPVLSKTPYLNRLFRNIGIGRTSRSIMMMVTP 1606


>gi|229529211|ref|ZP_04418601.1| hypothetical protein VCG_002304 [Vibrio cholerae 12129(1)]
 gi|229332985|gb|EEN98471.1| hypothetical protein VCG_002304 [Vibrio cholerae 12129(1)]
          Length = 489

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF 245
           LL    +++V L   IA +     +Q+ F   +   S+   ++   D G    S G  D 
Sbjct: 253 LLVRGTQEEVKLAKRIAALIDVKRRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDI 312

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            V    +   F     AL      R++ E  L A+  Q   F  G +        S    
Sbjct: 313 VVPPFTETTDFLKNFQALYTNGIARSVYETNLLALENQQGQF--GKKQTATLTLISNREV 370

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQ-TEVSEPVIGVNAGDM---PSYRVRKADTTVE 361
                +    L+ T  +L  G++  RIQ  E +    G N+      P    +  ++ V 
Sbjct: 371 KTEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDDEGENSDGSQRPPRVSSQSLNSEVY 430

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +  G T++L G      QQ + G+P+LS IP+LG LF+ +  ++ +
Sbjct: 431 IQPGQTVILGGFDNTVTQQQESGVPVLSSIPLLGELFKYTSESKHK 476


>gi|213026060|ref|ZP_03340507.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 173

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 6/168 (3%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L+ALE+++    L++P++  ++   A         + T         + +   G +
Sbjct: 1   FMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTKLQGEKVAKLESITTGSL 58

Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLA 371
           L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L +G +++L 
Sbjct: 59  LRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLG 118

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G  +      +  IPLL  IP++G LFRN                 +V
Sbjct: 119 GFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVV 166


>gi|260899863|ref|ZP_05908258.1| protein VcsC2 [Vibrio parahaemolyticus AQ4037]
 gi|308107338|gb|EFO44878.1| protein VcsC2 [Vibrio parahaemolyticus AQ4037]
          Length = 488

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 85/226 (37%), Gaps = 7/226 (3%)

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF 245
           LL     D+V L   IA +     +Q+ F   +   S+   ++F  D      S G  D 
Sbjct: 252 LLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKENFGVDSSWVNGSRGVYDL 311

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            V    +   F      L      R + E  L  +  Q   F  G +        S    
Sbjct: 312 VVPPFTETIDFLRNFQVLASNGIARGVYETNLLVLENQQGHF--GKKQTATIALISNRQV 369

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQ----TEVSEPVIGVNAGDMPSYRVRKADTTVE 361
                +    L+ T  +L  G +  RIQ    +   +     N+   P    +  ++ V 
Sbjct: 370 ETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDEEDSDNSNRPPRVSSQSLNSEVY 429

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +  G TI+L G      QQ + GIP+LS IP+LG LF+++   + +
Sbjct: 430 IKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475


>gi|330862295|emb|CBX72456.1| hypothetical protein YEW_HH31880 [Yersinia enterocolitica W22703]
          Length = 158

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 50/119 (42%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
            V     + + +   +  +++   ++  V VS    AD  +    ++ ++ K  G A  I
Sbjct: 26  AVNRANAEPVYLSTGQSYMIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFI 85

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           L   +   +    IL++  I      +R    +S+I +  + D+ +L G V T +  ++
Sbjct: 86  LFNQNHHPIKKSAILVDNTITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKKQ 144


>gi|145589562|ref|YP_001156159.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047968|gb|ABP34595.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 759

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 5/186 (2%)

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           +      ++  V    S+   + A   ++  + +A PTLTA+    ++F SG        
Sbjct: 482 IGTATSATINSVSGLVSYSLNI-ANSTSSNSQVIARPTLTALDRIPSTFYSGAVITAGLN 540

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK--- 355
                   +T    GV L  TPT +    + L ++   S            +  V +   
Sbjct: 541 GGGVSGAQITNIPTGVSLSVTPTFVDEESMMLAVKVSRSYVTSQNAGYGGFNASVSQDQH 600

Query: 356 -ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
                V++  G T++L GL    +  L++G+P+L  IPI+   F   +  +    + +  
Sbjct: 601 AVTANVKIKYGETLILDGLSSRAVSGLQDGVPVLQDIPIIQYFFNQKQQQQYSENVVVLV 660

Query: 415 TPFLVK 420
           TP  V+
Sbjct: 661 TPRKVQ 666


>gi|311279575|ref|YP_003941806.1| type II and III secretion system protein [Enterobacter cloacae
           SCF1]
 gi|308748770|gb|ADO48522.1| type II and III secretion system protein [Enterobacter cloacae
           SCF1]
          Length = 406

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 30/245 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K+V+  ++ AG D+V +   + EV+             T   +G   + AA   G  +  
Sbjct: 178 KRVLPEIDSAG-DEVFIAGYVFEVQ-------------TSERNGSGLALAAKLLGGKIEI 223

Query: 242 GGDFSVKGV-----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           G      G      +   S + +       +    ++ P L   SG SA+F+ G +    
Sbjct: 224 GMGNMSGGYENFIRIGGSSLDAMYELFRTDSRFNVVSSPRLRVKSGYSATFSVGQEVPVL 283

Query: 297 TV---SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYR 352
           +    + ++   SV     GV+L  TP+V       L+I  ++S  +       + P+  
Sbjct: 284 SGIDRNQNSTYQSVDYRSAGVILDVTPSV-RNSVTDLKISQQLSNFIKTDTGVNNTPTLI 342

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+  T V + SG  +VL GL +      + G   L K  +LG    +    + +T+I I
Sbjct: 343 KREVSTFVSVKSGDIVVLGGLAETKDSDARTGFSFLPK--VLG----SRSDEKSKTDILI 396

Query: 413 AATPF 417
                
Sbjct: 397 VLQVR 401


>gi|318040699|ref|ZP_07972655.1| general secretory pathway protein D [Synechococcus sp. CB0101]
          Length = 167

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADT-TVELPSGGTIVLAGLLKD 376
            +   G +   +  E+S  V        G +     R  DT  V +  G T++L G++ D
Sbjct: 38  KIDDNGFVTFSLSPEISAAVGTQQIDRCGIIYQINDRLLDTGKVRVRDGQTLILTGVISD 97

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + + +    P+L  +P++G  FR S  +R ++E+ I  TP +VK     D
Sbjct: 98  EDRSVVTKWPILGDLPLVGQFFRRSSGDRRKSELVIMVTPRIVKDDQGGD 147


>gi|319774909|ref|YP_004134178.1| hypothetical protein Theam_1790 [Thermovibrio ammonificans HB-1]
 gi|317115257|gb|ADU97746.1| hypothetical protein Theam_1790 [Thermovibrio ammonificans HB-1]
          Length = 570

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 20/249 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +KV+N L  A   QV  +V I EV      Q G   S    S     +     G  +V +
Sbjct: 323 EKVINSLIKAVSQQVQFRVAIYEVTYSDEFQSGVDWSAVFGSQNLQITTGQSTG--YVFD 380

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTV 298
              +   G  + F++  ++  L R   ++T+ +  +  +SG++ +   G  + +      
Sbjct: 381 LSGYFKAGKSNPFNY--LVKLLSRYGKVKTIYDNYVRTLSGETVAIVPGETYRFLESIET 438

Query: 299 SSSTGATSVTTHDY------GVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAG 346
            S      VT          G+ L+ TP     G     +                 N  
Sbjct: 439 QSQADTKLVTQVPVFKELSLGIQLYITPLKRDDGTTQYELDVTNRFIKSLKTYTFDNNTY 498

Query: 347 DMPSYRVRK-ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            +P    R     T  +P     V+ G+ +  +   + G+P L  IP+ G LF+      
Sbjct: 499 TVPELIGRTDISLTTVIPKHHFEVITGIKQYKLDSSQSGVPGLMDIPVAGELFKGRSRKA 558

Query: 406 EETEIFIAA 414
             +E  +A 
Sbjct: 559 TLSEYIVAI 567


>gi|89885888|ref|YP_516086.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89347886|gb|ABD72088.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 622

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 89/245 (36%), Gaps = 27/245 (11%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--DFGGKFVSEGGDFSVKGV--L 251
           +     I EV      Q G + +    + GP  S  A    GG  V++ G      +   
Sbjct: 192 IVFDTYIYEVNLTDGAQTGIKWNKLAMAIGPGGSLGALGAVGGSTVADSGGMGFSAIYKG 251

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
            RF  +     L+    ++T+A+P +  +SG    F +G    Y +   +  +T++    
Sbjct: 252 SRFDLDAFFSFLQTQGNVKTIAQPKIAIMSGSKGGFKAGSTTKYVSQVGTNSSTTINQTT 311

Query: 312 Y-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV------NAGDMPSYRVRKADT 358
                   G+ L  T  V S G +  RI+  +SE +          +  +P    R+  T
Sbjct: 312 VSTDTAVSGLDLSLTGDV-SDGTVYARIRISLSELIRFNSFEALGTSLQLPQTTSRELTT 370

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK---IPILGALFRNSRFNREETEIFIAAT 415
            +    G  ++L G+          G+P       +P       +S      TE+ +   
Sbjct: 371 AIRARPGDVVLLGGVNNSSESSDYSGLPGEKGQMLVP------TSSNKKVARTELVMVMK 424

Query: 416 PFLVK 420
           P +V+
Sbjct: 425 PKIVR 429


>gi|168701297|ref|ZP_02733574.1| hypothetical protein GobsU_17361 [Gemmata obscuriglobus UQM 2246]
          Length = 1374

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 75/363 (20%), Positives = 119/363 (32%), Gaps = 49/363 (13%)

Query: 95   GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
            G   V         ++N    +  +++ L   LRR + D  I VE+    V L       
Sbjct: 1005 GGGKVEFFDLGSALVVNQTADVIVEVSDLLEALRR-LQDLAIAVEI--RIVSLAESFFER 1061

Query: 155  QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
                 +V +     S            +  +N +N  G        T   +         
Sbjct: 1062 MGVDFSVNIKTNTSSFEPALTSGTFRPQPYINDINNKG--------TTVGLTPAGSFTPD 1113

Query: 215  FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                I  +S   +     ++     + GG       L+     T L   +       +  
Sbjct: 1114 LDVPIRATSFNRAIPGFGNYPNTPGNNGGISLGLAFLNDIQVYTFLEMAQGDQRSNIMQA 1173

Query: 275  PTLTAISGQSASFTSGGQHLYKT--------------------VSSSTGATSVT------ 308
            P LT  +GQ+A+ T      + T                     SS  G  S+T      
Sbjct: 1174 PKLTMFNGQTATLTVAETQFFVTNVQVVSVNGQIVFIPQQQQLPSSGQGTLSITVQAVVS 1233

Query: 309  --THDYGVVLHFTPTVLSPGRIGL-RIQTEVSEPVIGVNAGD---------MPSYRVRKA 356
                   + L     V +   + L  I T ++    G + G           PS+ +   
Sbjct: 1234 ADRRFVRLNLPVQLGVQAGAAVPLFPITTFITPVFEGGSQGQPIPFTQFLQQPSFTLLDI 1293

Query: 357  DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
             TTV  P GGT++L GL +    + + G P LSKIP L  LF+N    RE T + I  TP
Sbjct: 1294 QTTVVCPDGGTVLLGGLKRLSESRNEFGPPFLSKIPYLNRLFKNVGVGRETTHLMIMVTP 1353

Query: 417  FLV 419
             ++
Sbjct: 1354 RII 1356


>gi|270487709|ref|ZP_06204783.1| conserved domain protein [Yersinia pestis KIM D27]
 gi|270336213|gb|EFA46990.1| conserved domain protein [Yersinia pestis KIM D27]
          Length = 171

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 58/148 (39%), Gaps = 4/148 (2%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              K+I + +    I++V  ++  V VS    AD  +    ++ ++ K  G A   L   
Sbjct: 14  ANAKQIYLPIGGSHIIKVQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNK 73

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           + + +    +L+   I      +R    DS I +  + ++ +L G   T +       + 
Sbjct: 74  NHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIASI- 132

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAG 192
              + ++  ++      + +   L+I G
Sbjct: 133 ---VGEATASKKEKREKRVIKATLSIRG 157


>gi|87300799|ref|ZP_01083641.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 5701]
 gi|87284670|gb|EAQ76622.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 5701]
          Length = 911

 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 10/164 (6%)

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPT 321
           L  AT  RT A  +   +  Q         +   T ++   +   T    G+        
Sbjct: 729 LSPATIGRTRANESFVTVGRQ-----VVSAYDVTTTANVGVSCEPTFSTAGLTFGARVSK 783

Query: 322 VLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDD 377
           +   G +   +   +S  V        G +   R+R+ DT +V +  G T++L G++ DD
Sbjct: 784 IDDNGFVTFTLSPAISGVVDRQPVPGCGFIDILRLRRLDTGSVRVRDGQTLILTGVISDD 843

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             Q+    P+L  +P+LG  FR +  +R + E+ I  TP ++  
Sbjct: 844 DFQVVSKWPILGDLPLLGQFFRKTSGSRNKNELVILVTPRIIDD 887


>gi|87311027|ref|ZP_01093152.1| RhcC2 [Blastopirellula marina DSM 3645]
 gi|87286317|gb|EAQ78226.1| RhcC2 [Blastopirellula marina DSM 3645]
          Length = 300

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 18/239 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN-----IAGEDQVTLKVTIA 203
           G     Q +       E  L    + Q   +S   +   ++          QV + V + 
Sbjct: 18  GTAPAKQVAPVPAAAEEETLQAEKQLQRLIASRDALTQEIDRLRKRTGQHSQVFVSVQVF 77

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           E+      Q        G ++  +    A+ G   V  G     + + D  + + V+  L
Sbjct: 78  ELTHRKTPQ------ANGFAAALAAGGLAEPG--PVETGSATVYRVIADDEALKQVVAKL 129

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E++ A++ LAEPTL  +SGQ ASF  GG+   + V S+ G+ ++    YG  +H  P VL
Sbjct: 130 EKSGALKVLAEPTLMTVSGQPASFHVGGEFPIQ-VPSADGSPAIEFKAYGAEMHVVPVVL 188

Query: 324 SPGRIGLRIQTEVS--EPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
             GRI L ++  +S  +P  G+  GD  +P+ RVR  DT+VE+  G   VLAGL++  +
Sbjct: 189 GQGRIRLGLRPRISELDPDHGIKLGDLTVPALRVRGVDTSVEMHVGDAFVLAGLVQQRV 247


>gi|313681304|ref|YP_004059042.1| type ii and iii secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154164|gb|ADR32842.1| type II and III secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
          Length = 481

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 19/243 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGV 250
           +  +++I +V       +G   S+  S +    SF A   G   S G       F +   
Sbjct: 236 IEYEISIYDVELKDNYALGIDWSLVPSLAKDGLSFVASATGSLGSAGASAVPLTFGMIMK 295

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATS 306
            D ++ + +++ALE    + ++  P L  ++G +   T G +  Y    +  S   G   
Sbjct: 296 NDTYNGKALVNALENFGKVESVQRPKLLGLAGTNVKLTDGVEAPYISGIQNTSVGNGTAQ 355

Query: 307 VTTHDY----GVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAG--DMPSYRVRKAD 357
           V+T       G+ ++    +L       IGL+I   V      VN      P    +  +
Sbjct: 356 VSTTSATALSGLEINLKSNMLDGTVITDIGLKINDIVGYTSFEVNGNKFSQPQTVTKAIN 415

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            T+ +  G  IV++GL ++   +   G+P L      G +      +  ++E+ I  TP 
Sbjct: 416 NTMRVQPGVPIVISGLFRNKSDKGWNGLPGLGD-SAAGVVGGARHTSNTKSEMVIVVTPR 474

Query: 418 LVK 420
           ++K
Sbjct: 475 VIK 477


>gi|167947039|ref|ZP_02534113.1| Type II secretory pathway component PulD-like protein [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 290

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 84/228 (36%), Gaps = 25/228 (10%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +ET +         +   ++ +  +  +   QV ++VTIAEV      Q G   S+ GS 
Sbjct: 65  AETGMIAVRTTAKKHQEIERFLTQVLDSARRQVLIEVTIAEVVLSDHFQAGVDWSLIGSD 124

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
            G + +          +     ++ G ++       L ALE    ++ L+ P +  ++ Q
Sbjct: 125 IGINSAMIGQ--NLLQAPLASLTLSGNINGDPLNLTLKALENFGKVKVLSSPKIMTLNNQ 182

Query: 284 SASFTSGGQHLY------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            A      Q +Y                + T  T+V T   G+VL  TP V     + L 
Sbjct: 183 PAVLRVTDQRVYMITDVEVEEDQETKTKTRTFETTVNTVPEGLVLTVTPYVDQFDTVMLN 242

Query: 332 IQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           I+  +S                     +P  ++R+ +T + + SG + 
Sbjct: 243 IRPTISRILGFVEMRNQELDEANVINRVPQIQLREMETVLRVSSGDSA 290


>gi|187479017|ref|YP_787041.1| type IV pilus assembly protein (partial) [Bordetella avium 197N]
 gi|115423603|emb|CAJ50142.1| putative type IV pilus assembly protein (partial) [Bordetella avium
           197N]
          Length = 117

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P  R RKADT VEL  G   +++GL+    +     IPLL  +PI+G+ FR+ ++++E+
Sbjct: 2   IPVLRKRKADTMVELGDGEGFMISGLVSRQTKASVNKIPLLGDLPIIGSFFRSVQYSQED 61

Query: 408 TEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
            E+ I   P L +P+A    L  P     + D     F      + GP    ++ G
Sbjct: 62  NELVIVVPPRLRQPIARGVTLPLPGARQEMTDSG---FNAWGYHLLGPMAGEQMPG 114


>gi|85713096|ref|ZP_01044131.1| type IV pilus protein, PilN [Idiomarina baltica OS145]
 gi|85693082|gb|EAQ31045.1| type IV pilus protein, PilN [Idiomarina baltica OS145]
          Length = 489

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 88/257 (34%), Gaps = 28/257 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--FV 239
            + +N LN +   QV L V + EVR D  +Q     S    +S  +    +  G      
Sbjct: 237 DRYINQLNKSLTRQVALDVQVIEVRFDDSEQFTVDWSSVRRTSQGTPWLTSQSGSDNWLQ 296

Query: 240 SEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G F +  +   R S + ++ AL+    ++    P +  ++ Q A      +  Y   
Sbjct: 297 QAAGRFILSPLSGPRNSIDILVQALQEQGQVKVSHHPRILTLNHQVAQLLVEEEQAYLAE 356

Query: 299 SSSTGATSVTTHD--------YGVVLHFTPTVLSPGRIGLRIQ------TEVSEPVIGVN 344
           S  +    V             G  +   P +L    + L +         ++    G N
Sbjct: 357 SEVSTTPYVGQQQRLKPGKLTTGFRMFVLPNILKRD-VLLHLSSQMSALQGMNVVQSGDN 415

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ--QLKEGIPLLSKIPILGALFRNSR 402
               P    +       +    T++L G     +Q  + + G+  L     LG      +
Sbjct: 416 MIQTPHTSRKHFFLKALVGHEETLLLTGFRNQTVQAGRTRSGVSWL-----LG---GGQQ 467

Query: 403 FNREETEIFIAATPFLV 419
            +RE +E  +  TP +V
Sbjct: 468 KSRENSETLLLITPRIV 484


>gi|329847987|ref|ZP_08263015.1| bacterial type II and III secretion system family protein
           [Asticcacaulis biprosthecum C19]
 gi|328843050|gb|EGF92619.1| bacterial type II and III secretion system family protein
           [Asticcacaulis biprosthecum C19]
          Length = 545

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 102/312 (32%), Gaps = 20/312 (6%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            L       +       +  ++ V L G+       ++A            R + A    
Sbjct: 161 QLAALAAERVTQLPADAQTHAEAVRLSGLAY-AATGRKAEAWQSYARYAELRPEAAAPMH 219

Query: 182 KKVMNLLNI--------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
            ++ +L+                   DQ+++ V I   +      IG       ++    
Sbjct: 220 VRISDLVRTEDAATPVSDGPEVPVAPDQISVDVAIILSQTSQRDSIGINLLDGLTAQYGL 279

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPTLTAISGQSAS 286
           +S     G    +     +V   +        ++   R     + +A P LTA  G+ A 
Sbjct: 280 QSQRTTTGDAQGNRNMQRTVTEAISIPQLTYNMNLFNRFGQYYQVVARPMLTAYRGEPAD 339

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
           F  G     K   +    + + T D G  +  TP  ++     LRI+   S         
Sbjct: 340 FFVGRSA--KVAVTGVNFSQLETIDIGTQIKVTPVEITATGTRLRIEVTRSFLSGEPAGN 397

Query: 347 DMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              S     +   TTVE+  G T++L+GL +          PL+  +P++G+ F      
Sbjct: 398 FNESLNTWRQTVSTTVEVAFGTTLILSGLSESVRDSSTTKTPLVGDVPVVGSAFNRRITT 457

Query: 405 REETEIFIAATP 416
            +   + +  TP
Sbjct: 458 DKRDAVLVLVTP 469


>gi|238026031|ref|YP_002910262.1| type II secretory pathway, component PulD [Burkholderia glumae
           BGR1]
 gi|237875225|gb|ACR27558.1| Type II secretory pathway, component PulD [Burkholderia glumae
           BGR1]
          Length = 449

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 19/249 (7%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-----QVTLKVTIAEV 205
           V +   +      +   + QS       SS+K++  L ++  +      +V ++  + EV
Sbjct: 184 VGSRAKADAPPTSAAAMVDQSSDTMVFLSSAKEIALLKSVLPQVDTKTGEVAIRAWVYEV 243

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
             +  +  GFQ +     S          G   V E  +      L     +  + AL+ 
Sbjct: 244 STENDRTTGFQLAA----SILGGKLGVSLGVGTVDESAN---ALRLHAGFLDAAIAALDS 296

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDYGVVLHFTP 320
            +    +  P L   SG+      G             SS+    SVT  D GV+    P
Sbjct: 297 DSRFHVITSPNLRVESGKHGRLNVGQSVPVIDSVTYPNSSAAPLQSVTYQDAGVIFDVQP 356

Query: 321 TVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           TV     I   +  E+S+         + P+   RK +T++ L  G  +V+ GL +    
Sbjct: 357 TV-KDDVIDTDVTVEISDFQRTSTGVNNSPTKNTRKVETSMTLRDGEVVVMGGLSEGKDS 415

Query: 380 QLKEGIPLL 388
            +  GI  L
Sbjct: 416 IVTSGIRWL 424


>gi|255595192|ref|XP_002536247.1| conserved hypothetical protein [Ricinus communis]
 gi|223520311|gb|EEF26137.1| conserved hypothetical protein [Ricinus communis]
          Length = 316

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            ++ +++  EVS     V         +   R A+TT++L +  T +LAGL +DD Q+ +
Sbjct: 3   DQVSIKVGMEVSNITDQVTTSSGVLAYTIGSRNANTTLQLRNNETQILAGLFRDDEQKTR 62

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
             +P L  +P++G LF ++  ++ + EI +  TP ++  ++ 
Sbjct: 63  RKVPGLGNLPLIGKLFSSNNEDKRKNEIVLLITPRIMHNLSP 104


>gi|253688457|ref|YP_003017647.1| type II and III secretion system protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251755035|gb|ACT13111.1| type II and III secretion system protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 388

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 88/232 (37%), Gaps = 19/232 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
            D+V +   + E++ +     G Q + +  +S  +            S+   +     + 
Sbjct: 172 ADEVVVSGYVYEIQTNSRDGSGLQLAASLLNSKLNFQIGG-------SDSRGYENFLKIS 224

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---SVTT 309
             S   ++   +  T   T++ PTL   SG +A F+ G        +S  G +   SV  
Sbjct: 225 SGSMNALVELFKTDTRFSTVSAPTLRVRSGANAVFSVGNSTPTLGSTSFQGQSAIQSVVY 284

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTI 368
            D GV+   +P V     I LRI+ E+S      N   D P+   R+  T + L  G  I
Sbjct: 285 RDAGVIFDVSPAVRLD-AIDLRIRQELSNFTSTQNGVNDSPTLIKREISTDISLSDGDII 343

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +L GL  D       G   L         F +   + ++T+I I      ++
Sbjct: 344 LLGGLADDKKTASGTGFSWLPS-------FTSQGSSADKTDIVIVLQVRKIR 388


>gi|253990944|ref|YP_003042300.1| type III secretion system EscC protein [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782394|emb|CAQ85558.1| Putative type III secretion system EscC protein [Photorhabdus
           asymbiotica]
          Length = 491

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 97/267 (36%), Gaps = 12/267 (4%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---NLLNIAGED-QVTLKVTIAEVR 206
           V   +  +RA ++      +    +   +S  +V+   N L + G   ++TL   IA + 
Sbjct: 214 VNDGEMLERAYKVKLNEGDKQKLEEAEKTSKVQVIPGTNALLVRGTPGEITLAKRIASMI 273

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALER 265
               KQ+ F   +   ++  ++ F AD      S G  D           F     A+  
Sbjct: 274 DVKGKQLMFSLKVYDVAADRTEHFGADSSMLNGSTGIYDILTLPYSATKDFLNNFQAMYS 333

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R++    L  +      F  G +        S         +    L+ T  VL  
Sbjct: 334 NGLARSVYSTNLLILENHQGHF--GKKDTITVNLVSNKEVESLKIEADNSLYVTGRVLPS 391

Query: 326 GRIGLRIQ--TEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           G +  +++   E  +     N   +   P    +   +   +    TI+L G    +   
Sbjct: 392 GGVQAKLEYIEEHFDDDKSSNQNGVSQPPKISSQSLSSEAFIKPNETIILGGFDNIETLS 451

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREE 407
            + G+P+LS IP+LG +F+N++  + +
Sbjct: 452 SESGVPVLSSIPLLGEIFKNTKLTKRK 478


>gi|330950830|gb|EGH51090.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae Cit 7]
          Length = 314

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 13/198 (6%)

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---R 327
            +  P++  +  Q A             ++S    ++     G  L  TP  L      +
Sbjct: 1   MIGNPSILTLENQPAVIDFSRTEY--LTATSERVANIEPITAGTSLQVTPRSLDHDGKPQ 58

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L +  E  +  I       PS R     T   +   G++V+ G    +       +PL
Sbjct: 59  VQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPL 118

Query: 388 LSKIPILGA-LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
           L  IP +G  LF++      + E     TP L+      D   P  +    +       +
Sbjct: 119 LGDIPYIGKLLFQSRSRELSQRERLFILTPRLI-----GDQVNPARYVQNGNPHDVD--D 171

Query: 447 RVNKIYGPKEASEVEGQN 464
           ++ +I   ++  E+  + 
Sbjct: 172 QMKRIKERRDGGELPTRG 189


>gi|167571699|ref|ZP_02364573.1| Type II secretory pathway, component PulD [Burkholderia
           oklahomensis C6786]
          Length = 439

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 119/352 (33%), Gaps = 38/352 (10%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V +   +    K  G A         ++ ++ D+ + +        LR  I +  I   
Sbjct: 104 QVVTKNGVDYVTKKPGAA---------REKVDQDVFVYKPRYRRVDYLRALI-EPMIGTR 153

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY---ANSSSKKVMNLLNIAGEDQV 196
            +     L   V        AV++     S +              +  +L+ +   D+V
Sbjct: 154 SMP----LTAPVSMPMQPAGAVQVPGESTSPANDAPAMPIEMGVQARGDDLVIVGSHDEV 209

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--------EGGDFSVK 248
            L   +         ++  +  +   ++  S + A     + +S        +    +  
Sbjct: 210 ALLRKVVPELDTAPSEVVVRGWVYEVANTDSTNTAWSIAVRMLSGQLRVSSGDTSSDTSA 269

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTG 303
                   +  + AL   +  + ++ P +  +SG+      G Q   ++      S+ T 
Sbjct: 270 VRFTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTP 329

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVEL 362
             S+T  D G++    P V+    I +++  E+S+ V      D  P+   R+  T   +
Sbjct: 330 VQSITYQDAGLIFDVEPIVMRE-VIEVKVHEEISDFVATKTGVDTSPTKNTRQLQTVTRM 388

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             G  IVL GL++D     + G   L       +       +++ TE+ +  
Sbjct: 389 KDGEVIVLGGLIQDRNATARSGYAWLP------SFLDGRSSSKQRTEVLLVL 434


>gi|148826860|ref|YP_001291613.1| putative phage-like secreted protein [Haemophilus influenzae
           PittGG]
 gi|148718102|gb|ABQ99229.1| putative phage-related secreted protein [Haemophilus influenzae
           PittGG]
          Length = 377

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 107/300 (35%), Gaps = 25/300 (8%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           +AH+E   ++ + +S +   +  DT  L   ++  + +  A      +  ++       S
Sbjct: 93  LAHIESQPKKVMKNSFVYSPIYRDTEYLSQFLKDEEGAVSASGDKLVYYGKTEDIARVKS 152

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
             K V    ++    +V +   + EV+ +  +         GS         +   G  +
Sbjct: 153 VLKGV----DVP-SREVVVTGYVFEVQTEEKE---------GSGINLLAKLLSGKLGINI 198

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---- 295
               ++     ++  + + ++      +    ++ PTL   SG   +F+ G         
Sbjct: 199 GVKQNYENFITVNTGNLDAMIELFRTDSRFHVVSSPTLRVKSGSKGNFSVGSDVPVLGAV 258

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVR 354
                     S+     GV+    PT+     I L+I  ++S  V         P+   R
Sbjct: 259 TYDRDGRAVQSIEYRSSGVIFDIQPTI-KNNAIDLKINQQLSNFVKTDTGVNQSPTLIKR 317

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T V L SG  +VL GL ++ I + + G   L K    G L      +  +T+I I  
Sbjct: 318 DIVTDVTLKSGDIVVLGGLAENKITEGETGFSFLPK----GIL-SGRSKSNSKTDIVILL 372


>gi|190570911|ref|YP_001975269.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|190357183|emb|CAQ54599.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
          Length = 488

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 88/265 (33%), Gaps = 52/265 (19%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +N +      QV ++  I EV  D     G   +   + +    +          
Sbjct: 235 AVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGINLNDLHNKTKSITN---------- 284

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-- 297
               D S+  ++     E ++  L++      ++ P + AI+ Q A  +    H+Y T  
Sbjct: 285 ---QDSSITSLVMNSDLENLVKTLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSD 341

Query: 298 VSSSTGA------TSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN------ 344
           +   TG       T + +   GVVL   P++      I + I   +S             
Sbjct: 342 IQKDTGNSNHALITKMNSTPIGVVLIIHPSINIDTNEIFMDIHPTLSRINNYTKDPNIEY 401

Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                      D+P    R+  +T+++ SG  +V+ GL++                    
Sbjct: 402 VAQQNKMKLNSDIPIIETREMHSTLKIKSGEVMVIGGLIEHRKDNQ-------------- 447

Query: 396 ALFRNSRFNREET-EIFIAATPFLV 419
            L         +T E  I     +V
Sbjct: 448 NLLHQKSKKLAKTVETVIFLKATIV 472


>gi|301165542|emb|CBW25113.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ]
          Length = 493

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 65/402 (16%), Positives = 142/402 (35%), Gaps = 64/402 (15%)

Query: 46  KGKKISIGLNKVII---LQVPVDVQDVLV---SDPTKADVVVHSPRTMYLFGKNVGQANV 99
           +G +I I  NKV +   + VP D+  V+V     P    +V  SP+T  +  +N+     
Sbjct: 117 EGLEIGIKGNKVYVGGEIVVPSDIGRVIVVLGGYPDVVQLVELSPQTQRVIARNMQ---- 172

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
                                   +   +  + D  +RV   +   +L G+V +  D  R
Sbjct: 173 ------------------------KEIQKSNMPDVTVRV--ANGLFMLEGVVSSDVDKTR 206

Query: 160 AVELSETFLSQ-----SGRNQYANSSSKKVM-NLLNI-------AGEDQVTLKVTIAEVR 206
           A +++  ++       + R +   ++ K ++ N +++            + +     E+ 
Sbjct: 207 AEQIAAVYVPDMIQNLARRTEAVKAAEKDIIQNFISVNAKKKPAPIPKMIKISAQFVELT 266

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +D  K  GF+        G + +      G   S         + + F     L + + A
Sbjct: 267 KDYNKIFGFKWEPVLGGGGGTINIGKGADGGVTSSSSGTLAGTISNLF---PKLASAKSA 323

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              R +    +      ++      +  +   +     T   T   G  L  TPT+L   
Sbjct: 324 GYARVIQSGVIITKDKIASKIVKRSEKPFAIGTGEFVRTEKAT--AGFDLSITPTILPQE 381

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           ++ L +   VS      N GD P        T + + S  + V+ G++ +      +  P
Sbjct: 382 KVDLSMGLTVS-----ANVGDPPETTSNTIQTALVVKSKESAVVGGVVVNKSSTDFDRNP 436

Query: 387 --LLSKIPILGALF---RNSRFNREETEIFIAATPFLVKPVA 423
              + ++     LF   ++  +   +++  +  TP +++  +
Sbjct: 437 PGGVDEVEDGSKLFSFVKSKAYLTNKSQFVVFVTPEIIESAS 478



 Score = 45.8 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 4/157 (2%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKAD-VVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           ++ +G++ V  L        V V + T  + V++   R +   G   GQ +V++    G 
Sbjct: 30  EVVLGIDHVEKLDF-APSTKVQVGNDTILNHVIIPQKREITFKGLKPGQTSVMVRNTVGD 88

Query: 108 QMLNLDILIER-DIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                 + I   D + +   L+ F+ D   + + +  + V + G +    D  R + +  
Sbjct: 89  IKAKFLVNITATDQSKVVQELKEFLGDVEGLEIGIKGNKVYVGGEIVVPSDIGRVIVVLG 148

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
            +       + +  + + +   +    +      VT+
Sbjct: 149 GYPDVVQLVELSPQTQRVIARNMQKEIQKSNMPDVTV 185


>gi|113955379|ref|YP_731905.1| general secretion pathway protein D [Synechococcus sp. CC9311]
 gi|113882730|gb|ABI47688.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. CC9311]
          Length = 732

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 19/193 (9%)

Query: 261 HALERATAIRTLAEPTLTAISGQSA---SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
            AL+ AT  R+ A  +   +  Q     S ++G      +     G   +T         
Sbjct: 545 SALQTATIGRSKANESFVTVGTQETVNYSVSAGQNGAPNSCQPILGTAGLTF-----GAR 599

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADT-TVELPSGGTIVLAGL 373
            +  +   G +   +   ++      N    G      VR+ DT ++ +  G T++L G+
Sbjct: 600 VS-KIDDNGFVSFSLSPTIAAVTGTQNVEGCGPRSILSVRRLDTGSLRVRDGQTLILTGV 658

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL------ 427
           + D   Q     P+L  +P++G  FR S  +R + E+ +  TP ++      +       
Sbjct: 659 ISDRDAQQVRKWPILGDLPLIGQFFRESTRDRAKRELVVLVTPKIISDDQGGNYGYGYQP 718

Query: 428 SRPDDHYSVEDDA 440
           S P     + +DA
Sbjct: 719 SLPAARQLMSNDA 731


>gi|187736127|ref|YP_001878239.1| type II and III secretion system protein [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187426179|gb|ACD05458.1| type II and III secretion system protein [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 833

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 111/386 (28%), Gaps = 121/386 (31%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------------GSSS 224
           ++++         QV +  T  EV +  L+++GF   +                     +
Sbjct: 446 EELVAARTAEQPLQVVVSATFLEVNQTDLEELGFNWIVNLNLDPTKWFMGGAGTDKNDYN 505

Query: 225 GPSKSFAADFGGKFVSEG----------------------------------------GD 244
                 AA+  G     G                                          
Sbjct: 506 NSVLDSAANVAGAVAPAGVVGGLRSGNQVFTEDSIDSMIERGTSARSSDATYVPGGAPSI 565

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT------V 298
            +++G+        ++  L +      +  P++    G+ A+F SG + +Y T      V
Sbjct: 566 VTLRGMWSHADITMIMRGLSQKKGTDIMQHPSVIVRPGEKATFFSGRELIYPTEYDPPEV 625

Query: 299 SSSTGA------------------------TSVTTHDYG----------------VVLHF 318
            +STG                         ++  T   G                V +  
Sbjct: 626 PNSTGNNNDWGDNDNNGGGIPVMPMTPAHPSAFETRQLGTIFNVEVTGISDDKSIVEMTV 685

Query: 319 TPTVLS-PGRIG-------------LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
            P ++   G I                 + EV       N    P +  R+    V + +
Sbjct: 686 VPEIVDFDGFINYGTSLFVPMVSQEKDAKEEVVMVKTSDNFILQPVFSTRRLTAPVRIAT 745

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T+V+  L K      ++ IP+L  IP +G LFR+     +   I I     +V P   
Sbjct: 746 GNTLVIGALKKSTSITYEDKIPVLGDIPWVGRLFRSKGSKEQRKAIIIMVKAEVVDPGGK 805

Query: 425 R----DLSRPDDHYSVEDDAKAFFFN 446
           +    D S PDD     D +     N
Sbjct: 806 KLYTPDTSIPDDEVPAGDASLPALSN 831


>gi|254468950|ref|ZP_05082356.1| Bacterial type II and III secretion system protein [beta
           proteobacterium KB13]
 gi|207087760|gb|EDZ65043.1| Bacterial type II and III secretion system protein [beta
           proteobacterium KB13]
          Length = 719

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 90/254 (35%), Gaps = 31/254 (12%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------------KFVSE 241
            Q  ++  I EV  D   ++  + +    S+  S++      G               +E
Sbjct: 455 KQAMIETFILEVNSDWKNELESRFTSNTMSTNSSEAAGDGGSGLYSFTAGLLDFASATAE 514

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----- 296
           GG  +   +  R     +++ +E  +  + ++ P +    G+            +     
Sbjct: 515 GGITASTRLGSRNQISALVNMIETNSLGKKISNPVILVRDGEEGVVDKTRTFRAQRSTTT 574

Query: 297 --TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRV 353
             + +++T    +  +D  + L  TP +     +   I  + +       +A    +   
Sbjct: 575 TNSATTNTSNNQIDEYDAPLKLTVTPNINKHNDV---IDLDFNFVEETYDSASPTAASTS 631

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI-------PILGALFRNSRFNRE 406
               T +++  G  +++AGL +       +G+P +SK+       P++  L        +
Sbjct: 632 NNITTKLKIEPGEVVMMAGLFQQTQNNTTQGLPFVSKLGFSKLLSPLVALLGGGEVRRTD 691

Query: 407 E-TEIFIAATPFLV 419
             TE+ +   P ++
Sbjct: 692 TGTELLVFINPTVI 705


>gi|217077653|ref|YP_002335371.1| general secretion pathway protein D, putative [Thermosipho
           africanus TCF52B]
 gi|217037508|gb|ACJ76030.1| general secretion pathway protein D, putative [Thermosipho
           africanus TCF52B]
          Length = 368

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 81/222 (36%), Gaps = 23/222 (10%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           ++V I E+     K+ G   +   +    + S+            G+  +       +F 
Sbjct: 164 IQVKIIEIDESDFKKFGVSWN---NEENNTTSY----------NNGNLQLSLNPLNVNFN 210

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTHDYGVVL 316
            ++  L  +   + LAE TL   S  ++  T      Y TV  + G   +         +
Sbjct: 211 IIMDTLISSGNAKVLAEGTLKLKSNSTSQITG-----YTTVGFTIGKDNTYVEKKINTQI 265

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             +  V +     L +++ V   +   +            +T +++       +AGL  D
Sbjct: 266 IISGHVFTD-HANLTLKSIVESFIQNSSTFTPVGAS---VETNLDIKYEQPYYIAGLSFD 321

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + +   GIP L  IPI+G LF+NS +   +  I I     L
Sbjct: 322 SVTKQDGGIPGLKDIPIIGNLFKNSTYTSRKKNIVIFIKARL 363


>gi|297519324|ref|ZP_06937710.1| general secretion pathway protein D precursor [Escherichia coli
           OP50]
          Length = 136

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 7/128 (5%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSV 307
           +  +  ++ A++  ++   L+ P++T +  Q A F  G      T S+     S    +V
Sbjct: 11  KGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTV 70

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
                G++L  TP +     + + I+ EVS+     +   +  +  RK  TTV    G  
Sbjct: 71  ERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGEL 128

Query: 368 IVLAGLLK 375
           IVL GL+ 
Sbjct: 129 IVLGGLMD 136


>gi|28901194|ref|NP_800849.1| putative type III secretion system EscC protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260362753|ref|ZP_05775622.1| protein VcsC2 [Vibrio parahaemolyticus K5030]
 gi|260880041|ref|ZP_05892396.1| protein VcsC2 [Vibrio parahaemolyticus AN-5034]
 gi|260895158|ref|ZP_05903654.1| protein VcsC2 [Vibrio parahaemolyticus Peru-466]
 gi|28809707|dbj|BAC62682.1| putative type III secretion system EscC protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308085690|gb|EFO35385.1| protein VcsC2 [Vibrio parahaemolyticus Peru-466]
 gi|308092233|gb|EFO41928.1| protein VcsC2 [Vibrio parahaemolyticus AN-5034]
 gi|308112426|gb|EFO49966.1| protein VcsC2 [Vibrio parahaemolyticus K5030]
          Length = 487

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 90/224 (40%), Gaps = 5/224 (2%)

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF 245
           LL    +++V L   IA +     +Q+ F   +   S+   ++   D G    + G  D 
Sbjct: 253 LLIRGTQEEVKLAKRIAALIDVKRRQLLFSLKVYDISAERKENLGIDSGWLNGNRGIYDI 312

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            V    +   F     AL      R++ E  L A+  Q + F  G +        S    
Sbjct: 313 VVPPFTETKDFVKNFQALYSNGIARSVYETNLVALENQQSQF--GKKQTATLTLISDKQV 370

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQ-TEVSEP-VIGVNAGDMPSYRVRKADTTVELP 363
                +    L+ T  +L  G++  RIQ  E S       ++   P    +  ++ V + 
Sbjct: 371 KTEKIEADNSLYVTGRLLPSGQVQARIQYVEESLDEDDNEDSNRPPRVSSQSLNSEVYIQ 430

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
              T++L G      QQ + G+P++S IP+LG LF+ +  ++ +
Sbjct: 431 PNQTVILGGFDNTVTQQQESGVPIISSIPLLGELFKYTSESKHK 474


>gi|33152500|ref|NP_873853.1| putative phage-related secreted protein [Haemophilus ducreyi
           35000HP]
 gi|33148723|gb|AAP96242.1| putative phage-related secreted protein [Haemophilus ducreyi
           35000HP]
          Length = 374

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 104/304 (34%), Gaps = 51/304 (16%)

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           + RD+A+L   L+      + +V    D +V +G    I  +                  
Sbjct: 112 VHRDVAYLAEFLQA-----DGQVFAHGDKLVFYGTPAEISRA------------------ 148

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
                 K V+  L+   ++ V +   + EV+    +         GS         +   
Sbjct: 149 ------KSVLTSLDTVSKE-VVVTGYVFEVQTQEKE---------GSGINLFAKLLSGKL 192

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G  +     F     L+  + + ++   +  +    ++ PTL   SG   +F+ G     
Sbjct: 193 GINIGIKQSFENFITLNMGNLDAMIELFKSDSRFHVVSSPTLRVKSGSKGNFSVGSDVPV 252

Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPS 350
               K         S+     GV+   TPTV     I LRIQ ++S  V       + P+
Sbjct: 253 LGSVKYDKEGRAVQSIEYRTSGVIFDITPTVKRD-AIDLRIQQQLSNFVKTDTGVNNSPT 311

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R   T + + SG  IVL GL ++   +   G   L KI              E+T+I
Sbjct: 312 LIKRDIVTDITVKSGEVIVLGGLAENKQTEGNTGFSFLPKI------LTGKSNRSEKTDI 365

Query: 411 FIAA 414
            +  
Sbjct: 366 IVLL 369


>gi|254362930|ref|ZP_04978997.1| PulD family bacteriophage secretion protein [Mannheimia haemolytica
           PHL213]
 gi|153094576|gb|EDN75393.1| PulD family bacteriophage secretion protein [Mannheimia haemolytica
           PHL213]
          Length = 377

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 97/311 (31%), Gaps = 26/311 (8%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS-----------QRAVELSETFLSQS 171
            E  ++R+ ++ NI V      V + G +   Q              R V+   +FL   
Sbjct: 69  FEQFIQRYFSNMNISVSEKKGVVYI-GHIEPKQPKVIKRSFVYSPIHRDVDYLASFLKDG 127

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVT-----LKVTIAEVRRDILKQIGFQHSITGSSSGP 226
                  +S  K++         +V      +     EV               GS    
Sbjct: 128 TEGNQVFASGDKLVYYGTSEDIARVKSILKSIDTKSREVVVTGYVFEVQNIEKEGSGINL 187

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                +   G  V     +     ++  + + +          R ++ PTL   SG   +
Sbjct: 188 LAKLLSGKLGISVGYKQSYENFITVNAGNLDAMFELFRTDQRFRVVSSPTLRVKSGSRGN 247

Query: 287 FTSGGQHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           F+ G         T        S+     GV+    PT+     I L+IQ   +      
Sbjct: 248 FSVGSDVPVLSNVTYQDGRPIQSIEYRSSGVIFDIQPTI-KDKAIDLKIQQLSNFIKTDT 306

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
              + P+   R   T V + SG  IVL GL ++ I   +    LL K    G L      
Sbjct: 307 GVNNSPTLVKRDLVTDVTVKSGDVIVLGGLAENKISNGETSFSLLPK----GWL-SGKSN 361

Query: 404 NREETEIFIAA 414
              +T+I +  
Sbjct: 362 ENTKTDIIVLL 372


>gi|149195497|ref|ZP_01872574.1| type II secretion pathway protein XcpQ [Caminibacter mediatlanticus
           TB-2]
 gi|149134357|gb|EDM22856.1| type II secretion pathway protein XcpQ [Caminibacter mediatlanticus
           TB-2]
          Length = 336

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 77/213 (36%), Gaps = 19/213 (8%)

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           I  V  +  +++G +            +   D            ++  +    +F++ ++
Sbjct: 104 ITAVNNNKARKLGVKLDFNNPFKNILLNIVTDTA----------TISTLPSGVNFQSFIN 153

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGV 314
            L      +T+ +PTL  I   +    S     +   S +          T +   D G+
Sbjct: 154 FLNSKNIAQTIDKPTLRLIDSHNYVLESVHSIPFTETSVTIDKNGNPVTKTDLKYKDIGL 213

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL-PSGGTIVLAGL 373
            ++     +S   I   +   V   V  +   + P    +  +T ++L     + ++AGL
Sbjct: 214 KIYIKNVFISKNSIDFDLDIYVQNIV-SILQNNQPVVDTKHFNTHIQLTKKNCSYLIAGL 272

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
                    + +P+L  +P +G LFR+S  + +
Sbjct: 273 RSVSTISQNKKVPVLGDLPFVGLLFRSSDKSVQ 305


>gi|153836074|ref|ZP_01988741.1| VcsC2 [Vibrio parahaemolyticus AQ3810]
 gi|149750828|gb|EDM61573.1| VcsC2 [Vibrio parahaemolyticus AQ3810]
          Length = 487

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 5/224 (2%)

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF 245
           LL    +++V L   IA +     +Q+ F   +   S+   ++   D G    + G  D 
Sbjct: 253 LLIRGTQEEVKLAKRIAALIDVKRRQLLFSLKVYDISAERKENLGIDSGWLNGNRGIYDI 312

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            V    +   F     AL      R++ E  L A+  Q + F  G +        S    
Sbjct: 313 VVPPFTETKDFVKNFQALYSNGIARSVYETNLVALENQQSQF--GKKQTATLTLISDKQV 370

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
                +    L+ T  +L  G++  RIQ   E  +     ++   P    +  ++ V + 
Sbjct: 371 KTEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDEDDNEDSNRPPRVSSQSLNSEVYIQ 430

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
              T++L G      QQ + G+P++S IP+LG LF+ +  ++ +
Sbjct: 431 PNQTVILGGFDNTVTQQQESGVPIISSIPLLGELFKYTSESKHK 474


>gi|315499170|ref|YP_004087974.1| type II and iii secretion system protein [Asticcacaulis excentricus
           CB 48]
 gi|315417182|gb|ADU13823.1| type II and III secretion system protein [Asticcacaulis excentricus
           CB 48]
          Length = 543

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 87/252 (34%), Gaps = 24/252 (9%)

Query: 192 GEDQVTLKVTIA--------EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
             DQV++ V I          V  ++L  +  Q+      +                 G 
Sbjct: 245 TPDQVSVDVAIILSQNAQRDSVGVNLLDGLQLQYGRQDQQNHSGG-----------DTGV 293

Query: 244 DFSVKGVLDRFSFETVLHALERATAI-RTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             ++   +        L+   R     + +A P LTA  G+ + F  G     K      
Sbjct: 294 TRTITDTITLPQLTYNLNLFNRFGQYYQVVARPMLTAYRGEPSDFFVGRS--TKVAVKGV 351

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTV 360
             + +   D G  +  TP  ++  R  LRI+   S            +     +   TTV
Sbjct: 352 NFSQLENIDIGTQVKVTPVEITSDRTRLRIEVTRSFLSGEPAGNFNEALNTWRQTVSTTV 411

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           E+  G T++L+GL +          PL+   P++G+ F     N+    + +  TP   +
Sbjct: 412 EVRFGTTLILSGLSESVRDSSVTKTPLIGDAPLIGSGFNRRVTNQRRDAVLVLVTPSPAR 471

Query: 421 PVAMRDLSRPDD 432
            +  +  SR  D
Sbjct: 472 VMESQGWSRQAD 483


>gi|330951303|gb|EGH51563.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae Cit 7]
          Length = 584

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 23/170 (13%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSF 230
           + Q      +++++ L+I    QV ++  I E   D  KQ+G +   + ++SG     ++
Sbjct: 417 QTQERLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTY 475

Query: 231 AADFGGKFVSEGGD-------------------FSVKGVLDRFSFETVLHALERATAIRT 271
             D  G      G                      +  V +    +  L A+E+      
Sbjct: 476 GLDNNGDEAGNTGSSTTSNVPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEI 535

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           +++P +     ++A    G +  Y+  SSS+GAT+V+  +  + L  TP 
Sbjct: 536 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQ 584


>gi|167564548|ref|ZP_02357464.1| Type II secretory pathway, component PulD [Burkholderia
           oklahomensis EO147]
          Length = 400

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 113/326 (34%), Gaps = 32/326 (9%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V +   +    K  G A         ++ ++ D+ + +        LR  I +  I   
Sbjct: 86  QVVTKNGVDYVTKKPGAA---------REKVDRDVFVYKPRYRRVDYLRALI-EPMIGAR 135

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY---ANSSSKKVMNLLNIAGEDQV 196
            +     L   V        AV++    +S +              +  +L+ +   D+V
Sbjct: 136 SMP----LTAPVSMPMQPAGAVQVPGEPISPASDAPAMPIETGVQARGDDLVIVGSHDEV 191

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--------EGGDFSVK 248
            L   +         ++  +  +   ++  S + A     + +S        +    +  
Sbjct: 192 ALLRKVVPELDTAPSEVVVRGWVYEVANTDSTNTAWSIAVRMLSGQLRVSSGDTSSDTSA 251

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTG 303
                   +  + AL   +  + ++ P +  +SG+      G Q   ++      S+ T 
Sbjct: 252 VRFTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTP 311

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVEL 362
             S+T  D G++    PTV+    I +++  E+S+ V      D  P+   R+  T   +
Sbjct: 312 VQSITYQDAGLIFDVEPTVMRE-VIEVKVHEEISDFVATKTGVDTSPTKNTRQLQTVTRM 370

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLL 388
             G  IVL GL++D     + G   L
Sbjct: 371 KDGEVIVLGGLIQDRNATARSGYAWL 396


>gi|281355619|ref|ZP_06242113.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281318499|gb|EFB02519.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 540

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 96/276 (34%), Gaps = 43/276 (15%)

Query: 180 SSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---------K 228
           S K + N+L        ++  +  + E+  +   +IG       ++ G            
Sbjct: 215 SWKHISNMLAQYDRPIPEIRFRYKVVEIFAENDDKIGLDFQSWKNNDGADFFSAGGRFRS 274

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           ++A+ FG    + G   +     +       +  L      R L    L A +  + S  
Sbjct: 275 NWASTFGAGVNNSGSSKTEFFNFNPKWNSKYIDFLTSRGKARVLTSGVLNAKNRTTTSIN 334

Query: 289 SGGQHLYKTVSSS----------------------------TGATSVTTHDYGV--VLHF 318
            G    Y  VS                               G   +T    G    L  
Sbjct: 335 VGSGLFYDDVSQKIEPGNTGRLPAPFAGEPDVPDAGKLEIRKGQQQITKVGEGFRFSLDL 394

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS-GGTIVLAGLLKDD 377
              +++     L++  E S  +IG ++   P     + +T V++ + G   V+ GL K D
Sbjct: 395 VEPIVTANSTTLKLHAE-SVSLIGWDSSGEPRLNKSEIETEVQIGNSGKNFVIGGLRKFD 453

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           I +   G+PLL  +P+LG LF     + ++++I I 
Sbjct: 454 IVRGVAGVPLLKDLPLLGWLFSTESESTKKSQIVIL 489


>gi|213019427|ref|ZP_03335233.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|212994849|gb|EEB55491.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 448

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 88/265 (33%), Gaps = 52/265 (19%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +N +      QV ++  I EV  D     G   +   + +    +          
Sbjct: 195 AVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGINLNDLHNETKSITN---------- 244

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-- 297
               D S+  ++     E ++  L++      ++ P + AI+ Q A  +    H+Y T  
Sbjct: 245 ---QDSSITSLVMNSDLENLVKTLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSD 301

Query: 298 VSSSTGA------TSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN------ 344
           +   TG       T + +   GVVL   P++      I + I   +S             
Sbjct: 302 IQKDTGNSNHALITKMNSTPIGVVLIIHPSINIDTNEIFMDIHPTLSRINNYTKDPNIEY 361

Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                      D+P    R+  +T+++ SG  +V+ GL++                    
Sbjct: 362 VAQQNKMKLNSDIPIIETREMHSTLKIKSGEVMVIGGLIEHRKDNQ-------------- 407

Query: 396 ALFRNSRFNREET-EIFIAATPFLV 419
            L         +T E  I     +V
Sbjct: 408 NLLHQKSKKLAKTVETVIFLKATIV 432


>gi|320107685|ref|YP_004183275.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
 gi|319926206|gb|ADV83281.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
          Length = 617

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 133/376 (35%), Gaps = 75/376 (19%)

Query: 113 DILIERDIAHLEMTLRRFIAD----SNIRVEMVSDTVVLHGMVRTIQDSQRA-VELSETF 167
            IL+  D       L R + +      +  E ++D   +  +VR I D ++A V+     
Sbjct: 230 TILVAEDTPGNRERLERQMEEMVSLPGLTTEQLND---IGNIVRNIFDVKQATVQPHAGT 286

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
           L      +  N+ ++ + +L++  G  +V L++ +  V ++  +  G     + ++  P+
Sbjct: 287 LVLRASAEKLNAINRTLEDLID--GGSEVLLRLRLYSVSKNKSQDTGLTPPQSLTAFSPA 344

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR----------------- 270
            + ++             +   +    S   +  AL  +                     
Sbjct: 345 GAASSLISANQTLADQIVASGALGTNPSQIAIALALIASGVSSNLLTGSFLKVGGGLSTV 404

Query: 271 TLAEPT--------------------LTAISGQSASFTSGGQHLYKTVSSSTG------- 303
            L+                       L     ++ +F SG +    T + S+G       
Sbjct: 405 ILSTANSPTLNLTLSSSDSRSLDDVQLRLSDRETGTFRSGSRFPIVTSTYSSGISTAAGS 464

Query: 304 -------------------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
                                 +   D G+ L  TP +   G + + ++ ++ E + G  
Sbjct: 465 STAAALLSQFLGSSASSVVVPQIQYEDLGLTLKATPHMQRSGDVSVHLELKI-EALSGQA 523

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
             D+P    +   + + L +G T ++ GLL     +   GIP LS +P   ++  ++  N
Sbjct: 524 QNDIPILANQLVTSDLTLRAGETAMIMGLLTRSQSKAISGIPGLSDLPGFQSI-TDNTGN 582

Query: 405 REETEIFIAATPFLVK 420
           + E E+ +  TP +V+
Sbjct: 583 KMEDEMVLLLTPVVVR 598


>gi|332091472|gb|EGI96557.1| general secretion pathway protein D domain protein [Shigella boydii
           3594-74]
          Length = 93

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           +L  TP +     + + I+ EVS+     +   +  +  RK  TTV    G  IVL GL+
Sbjct: 1   MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            D   +    +PLL  IP++G LF+++   +E 
Sbjct: 59  DDQAGESVAKVPLLGDIPLIGNLFKSTADKKEN 91


>gi|284006612|emb|CBA71873.1| phage secreted protein [Arsenophonus nasoniae]
          Length = 334

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 10/203 (4%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           GS         +   G  +    ++     ++  + + ++      +    ++ PTL   
Sbjct: 138 GSGINLLAKLLSGKLGINIGIKQNYENFITINTGNLDAMIELFRTDSRFHVVSSPTLRVK 197

Query: 281 SGQSASFTSGGQHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SG   +F+ G         T        SV     GV+    PT+ S   I L+IQ ++S
Sbjct: 198 SGSKGNFSVGSDVPVLSSVTYQDGRPVQSVEYRSSGVIFDIQPTIKSQ-AIDLKIQQQLS 256

Query: 338 EPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
             V         P+   R   T V + SG  IVL GL ++ +++   G   L K    G 
Sbjct: 257 NFVKTDTGVNQSPTLIKRDIVTDVTVKSGDVIVLGGLAENKLEEGGTGFSFLPK----GF 312

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           L      +R +T+I +     ++
Sbjct: 313 L-SGKSTSRTKTDIVVLLQVKVI 334


>gi|257465733|ref|ZP_05630104.1| putative phage-related secreted protein [Actinobacillus minor 202]
 gi|257451393|gb|EEV25436.1| putative phage-related secreted protein [Actinobacillus minor 202]
          Length = 375

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 10/169 (5%)

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATS 306
            ++  + + +          + ++ P L   SG   +F+ G         T        +
Sbjct: 208 TVNAGNLDAIFELFRTDGRFQVVSSPILRVKSGSKGNFSVGSDVPILSNVTYQDGKPIQA 267

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSG 365
           +     GV+    PT+     I L+IQ ++S  V         P+   R   T V + SG
Sbjct: 268 IEYRSSGVIFDIQPTI-KNQSIDLKIQQQLSNFVKTDTGVNQSPTLIKRDLVTDVSVKSG 326

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             IVL GL ++ + + + G   L K    G L      +  +T+I +  
Sbjct: 327 DVIVLGGLAENKLTEGETGFSFLPK----GWL-TGKSKSSTKTDIIVLL 370


>gi|87306498|ref|ZP_01088645.1| general secretory pathway protein D-like [Blastopirellula marina DSM
            3645]
 gi|87290677|gb|EAQ82564.1| general secretory pathway protein D-like [Blastopirellula marina DSM
            3645]
          Length = 1313

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 109/331 (32%), Gaps = 85/331 (25%)

Query: 173  RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------T 220
            + Q  +     ++  L    + QVT++V    +  +  ++IG    +             
Sbjct: 968  QTQEVHDKIADLLEQLRRLQDLQVTIEVRFITLNDNFFERIGIDFDLDIKDNTSGIGTNR 1027

Query: 221  GSSSGPSKSFAADFGGKFVSE---------------------------GGDFSVKGVLDR 253
            GS   PS +   D  G   S+                           GG F    + D 
Sbjct: 1028 GSDGSPSITIGLDQTGNPTSDLDLSFAQNSFGNTVPAIGGLGAAAGSIGGSFGFAMLSDI 1087

Query: 254  FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------STGATS 306
             +F  V+ A +       +  P +T  +GQ+A  T   Q  + T  +       +     
Sbjct: 1088 EAF-FVMQAAQSDLRSNVMQAPKVTLFNGQTAFVTDSTQRPFVTSVTPVVGDFAAAQQPV 1146

Query: 307  VTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPV------------------------- 340
            +   + G  L     V +  R + L +    S+                           
Sbjct: 1147 IVVLNEGTSLTVQAVVSADRRFVRLTLVPMFSQIGEVDTFTFEGTSSSRADSTVEDPDAA 1206

Query: 341  ------------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
                        +       P + +    TTV +P GGT++L G+ +   ++ + G+P++
Sbjct: 1207 DGGTTTDNEEEQMTGTTVQQPEFSIITVTTTVSVPDGGTVLLGGIKRLSEERREAGVPIV 1266

Query: 389  SKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SK+P +  LFRN    R    + +  TP ++
Sbjct: 1267 SKLPYINRLFRNVGIGRSTQSLMMMVTPRII 1297


>gi|71901990|ref|ZP_00684038.1| general secretory pathway protein D precursor [Xylella fastidiosa
           Ann-1]
 gi|71728245|gb|EAO30428.1| general secretory pathway protein D precursor [Xylella fastidiosa
           Ann-1]
          Length = 106

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +A        R+  T   + SG TI+LAGL+  +  +   G+P LSK+PI+G LF     
Sbjct: 2   SAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQ 61

Query: 404 NREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFN 446
           N    EI +  TP +V+ P   R+L    D YS + +A      
Sbjct: 62  NNNRREIIVLLTPEIVRNPQEARNL---TDEYSQKFNAMEPLPG 102


>gi|331646883|ref|ZP_08347982.1| outer membrane lipoprotein BfpB (Bundle-forming pilus B)
           [Escherichia coli M605]
 gi|331044200|gb|EGI16331.1| outer membrane lipoprotein BfpB (Bundle-forming pilus B)
           [Escherichia coli M605]
          Length = 563

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 96/260 (36%), Gaps = 29/260 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKSFAADFGGK 237
           +  +  +N   E QVT+ V +  V       +    S      G   G   S     GG 
Sbjct: 304 ENYIKKINNELEQQVTINVAVYSVEVTDTSNLALSLSGVLKQRGHELGALSSSTFAVGG- 362

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +    F+  G  +    E +L AL++A  +  +   ++T +SGQ      GG   Y +
Sbjct: 363 LPTLTAYFNGDGSENN---EALLSALDKAGKVSIVTSASVTTMSGQPTPLQVGGNRTYVS 419

Query: 298 VSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--- 347
              +         + S ++   G  ++  P VL  G++ L+    +S      N  D   
Sbjct: 420 QIGTIMSSVSTQSSVSTSSISTGFSMNILPRVLDNGQVMLQYGINISSLAGTHNGFDEVT 479

Query: 348 -------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                  +P+ + R    +  L +G T+VLAG  +   +    GI      P    L   
Sbjct: 480 AAGTTIQLPNIQQRSFIQSSLLQNGNTLVLAGYEQQRNETSDSGI---GD-PSFKLLGGA 535

Query: 401 SRFNREETEIFIAATPFLVK 420
              +  +T I I  TP +++
Sbjct: 536 RAGSHAKTLIVICITPRVLQ 555


>gi|289628765|ref|ZP_06461719.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 578

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S+ +  +   N A   QV   V + E       Q+    +   +S       +       
Sbjct: 322 SNVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPG 381

Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           +S        G++D  +        ++ A+     I  +  P++T ++ Q A    G   
Sbjct: 382 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 441

Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339
            Y     +    SV         T   G  +   P ++    + L +   +S        
Sbjct: 442 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 501

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               ++  +P+Y  +     V+L SG T++L+G   +++    + I      P    L  
Sbjct: 502 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 557

Query: 400 NSRFNREETEIFIAATPFL 418
             +    ++ + +  TP +
Sbjct: 558 GRKRTSSKSILVVLITPIV 576


>gi|330870423|gb|EGH05132.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 578

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S+ +  +   N A   QV   V + E       Q+    +   +S       +       
Sbjct: 322 SNVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPG 381

Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           +S        G++D  +        ++ A+     I  +  P++T ++ Q A    G   
Sbjct: 382 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 441

Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339
            Y     +    SV         T   G  +   P ++    + L +   +S        
Sbjct: 442 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 501

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               ++  +P+Y  +     V+L SG T++L+G   +++    + I      P    L  
Sbjct: 502 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 557

Query: 400 NSRFNREETEIFIAATPFL 418
             +    ++ + +  TP +
Sbjct: 558 GRKRTSSKSILVVLITPIV 576


>gi|68637854|emb|CAI36059.1| type IV pilus protein [Pseudomonas syringae pv. phaseolicola]
          Length = 578

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S+ +  +   N A   QV   V + E       Q+    +   +S       +       
Sbjct: 322 SNVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPG 381

Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           +S        G++D  +        ++ A+     I  +  P++T ++ Q A    G   
Sbjct: 382 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 441

Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339
            Y     +    SV         T   G  +   P ++    + L +   +S        
Sbjct: 442 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLIDDDEMLLMVSINMSSKPTFEPF 501

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               ++  +P+Y  +     V+L SG T++L+G   +++    + I      P    L  
Sbjct: 502 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 557

Query: 400 NSRFNREETEIFIAATPFL 418
             +    ++ + +  TP +
Sbjct: 558 GRKRTSSKSVLVVLITPIV 576


>gi|78045321|ref|YP_361571.1| putative PilN-like type II and III secretion system protein
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78033825|emb|CAJ19824.1| putative PilN-like Bacterial type II and III secretion system
           protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 578

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 85/249 (34%), Gaps = 19/249 (7%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +   N     QVTL   +  +  +   ++G    +   S      F   F     +    
Sbjct: 326 LERENTTLTKQVTLHAKVLSLTLNDANEVGVNWDVVYRSLSRQFEFTTPFQPASSAGTLG 385

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-------- 296
            SV           ++ AL     + T+  P+L  ++ + A      Q  Y         
Sbjct: 386 ASVINTGKFAGTNVIVSALSTLGTVNTITSPSLKTLNLRPAPIQIARQIGYIQSAQISQT 445

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPV------IGVNAGDMP 349
             + + G  +      G  +   P +L+    + L+    +S          G    +MP
Sbjct: 446 EGAGTLGGLTPGFVTVGFNMTVVPRLLAQNEEMILQYSINISALNELRSEEAGGTKIEMP 505

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R  ++ V L +G T++L G  +++    + G+      P    L  ++R  R+ T 
Sbjct: 506 DIDTRNFNSEVRLHAGETLILHGFEQENHSSNRRGM---GS-PFAWMLGGSARGQRQRTA 561

Query: 410 IFIAATPFL 418
           I I  TP +
Sbjct: 562 IVILITPEV 570


>gi|330966660|gb|EGH66920.1| type II and III secretion system protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 578

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 85/259 (32%), Gaps = 23/259 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S+ +  +   N +   QV   V + E       Q+    S    S       +       
Sbjct: 322 SNVETYLAKTNHSITQQVLFNVKVFEATLTDTDQLALNWSAVYKSLSTKWGLSLSNSVPG 381

Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           +S        G++D  +        ++ A+     I  +  P++T ++ Q A    G   
Sbjct: 382 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 441

Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339
            Y     +    SV         T   G  +   P ++    + L I   +S        
Sbjct: 442 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPF 501

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               ++  +P+Y  +     V+L SG T++L+G   D++    + I      P    L  
Sbjct: 502 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--DELSDNTDKI-GTGS-PGFFGLGG 557

Query: 400 NSRFNREETEIFIAATPFL 418
                  ++ + +  TP +
Sbjct: 558 GRTRTSSQSFLVVLITPIV 576


>gi|170738260|ref|YP_001779520.1| type IVB pilus formation outer membrane protein [Burkholderia
           cenocepacia MC0-3]
 gi|169820448|gb|ACA95030.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia cenocepacia MC0-3]
          Length = 559

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 97/311 (31%), Gaps = 32/311 (10%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
             ++     ++TVV   +      S     +   +          + +     ++L+  G
Sbjct: 248 QPSVSATNTANTVVNSQLSVFNSLSASIKAMLSRYGGVVSSPATGSITVTDTPDVLDRVG 307

Query: 193 E----------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +           QV + VT+  V        G        + G S S A  F     +  
Sbjct: 308 QFMEAQNRSLSKQVLIDVTVLSVDLSDDDSYGINWRAVYQALGTSFSLANTFS-TTATNP 366

Query: 243 GDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             F+ + +           ++ AL R   +R     ++T ++ Q        Q  Y    
Sbjct: 367 VSFTAQVITPNSRASGTLAMISALSRQGKVRRKTSASITTLNDQPVPVQVATQQGYLASV 426

Query: 300 SSTGATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNA 345
           S+T   +V +           G  +   P VL  G + L+  T +S          G   
Sbjct: 427 STTNTANVGSQTALTPGTVTTGFNMTLLPHVLDNGTVLLQFYTNISALLELKTIESGGQK 486

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P    R     V + SG T+VL+G    +    K GI      P   A        R
Sbjct: 487 IQTPQIDTRNFLQRVSMKSGQTLVLSGYEASNDNLTKSGI----GTPNNYAFGGGYDGAR 542

Query: 406 EETEIFIAATP 416
           +  EI I  TP
Sbjct: 543 DRQEIVILITP 553


>gi|254244616|ref|ZP_04937938.1| PilN [Pseudomonas aeruginosa 2192]
 gi|126197994|gb|EAZ62057.1| PilN [Pseudomonas aeruginosa 2192]
          Length = 569

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++N  N +   QV L V +  V      Q+G   ++   S               + +
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375

Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                   +LD  +        ++ AL +   + T+  P++T ++ QSA    G    Y 
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435

Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342
             S  +    V +           G  +   P V+  G + L+I   ++          G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +                 
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568


>gi|258545349|ref|ZP_05705583.1| type IV pilus secretin PilQ [Cardiobacterium hominis ATCC 15826]
 gi|258519452|gb|EEV88311.1| type IV pilus secretin PilQ [Cardiobacterium hominis ATCC 15826]
          Length = 111

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 41/94 (43%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            + L I  +     + V      +       T V + +G TIVL G+ K       E +P
Sbjct: 3   DMELNINNDELGNNVSVAGQTSFTKNTSGVKTNVLVDNGETIVLGGVYKQRQTAKTEKVP 62

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           LL  IP++G  F+ +    E+ E+ I  TP +V 
Sbjct: 63  LLGDIPVIGNAFKKNTRAFEKNEMLIFVTPRIVD 96


>gi|1314252|gb|AAC44041.1| BfpB [Escherichia coli]
          Length = 552

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 97/264 (36%), Gaps = 36/264 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            + +N LN   E QVT+ V I  V       +    S+    +       +     F + 
Sbjct: 294 NEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAM--SLEAFVNDNGGVLGSVSTSNFAAT 351

Query: 242 GGDFSVKGVLDR---FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297
            G  S  G L+     S + +L+ L     +  +   ++T +SGQ      G    Y + 
Sbjct: 352 SGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGNDRTYVSE 411

Query: 298 ------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---- 347
                  SS++   S +T   G +++  P V   G I L+    +SE V   N  D    
Sbjct: 412 IGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNNGFDQATV 471

Query: 348 ------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-----LLSKIPILGA 396
                 +P+        +  L +G T+VLAG  K   + + +G+      LL      GA
Sbjct: 472 NGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGVGTTSFKLLG-----GA 526

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           L      +   T   I  TP ++ 
Sbjct: 527 L----NGSASRTVTVICITPRIID 546


>gi|10955355|ref|NP_053067.1| BfpB [Escherichia coli]
 gi|190014869|ref|YP_001965381.1| Lipoprotein [Escherichia coli]
 gi|194429634|ref|ZP_03062153.1| outer membrane lipoprotein BfpB [Escherichia coli B171]
 gi|215276196|ref|YP_002332159.1| lipoprotein [Escherichia coli O127:H6 str. E2348/69]
 gi|22653674|sp|Q9S142|BFPB_ECO11 RecName: Full=Outer membrane lipoprotein BfpB; AltName:
           Full=Bundle-forming pilus B; Flags: Precursor
 gi|229462858|sp|Q47068|BFPB_ECO27 RecName: Full=Outer membrane lipoprotein BfpB; AltName:
           Full=Bundle-forming pilus B; Flags: Precursor
 gi|6009381|dbj|BAA84840.1| BfpB [Escherichia coli]
 gi|109389590|gb|ABG29509.1| Lipoprotein [Escherichia coli]
 gi|194412358|gb|EDX28661.1| outer membrane lipoprotein BfpB [Escherichia coli B171]
 gi|215267792|emb|CAS07441.1| lipoprotein [Escherichia coli O127:H6 str. E2348/69]
 gi|323159042|gb|EFZ45043.1| outer membrane lipoprotein bfpB [Escherichia coli E128010]
          Length = 552

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 96/264 (36%), Gaps = 36/264 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            + +N LN   E QVT+ V I  V       +          +G      +     F + 
Sbjct: 294 NEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGV--LGSVSTSNFAAT 351

Query: 242 GGDFSVKGVLDR---FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297
            G  S  G L+     S + +L+ L     +  +   ++T +SGQ      G    Y + 
Sbjct: 352 SGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGNDRTYVSE 411

Query: 298 ------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---- 347
                  SS++   S +T   G +++  P V   G I L+    +SE V   N  D    
Sbjct: 412 IGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNNGFDQATV 471

Query: 348 ------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-----LLSKIPILGA 396
                 +P+        +  L +G T+VLAG  K   + + +G+      LL      GA
Sbjct: 472 NGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGVGTTSFKLLG-----GA 526

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           L      +   T   I  TP ++ 
Sbjct: 527 L----NGSASRTVTVICITPRIID 546


>gi|330900252|gb|EGH31671.1| type II and III secretion system protein [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 552

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S+ +  +   N A   QV   V + E       Q+    +   +S       +       
Sbjct: 296 SNVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLSTRWGLSLSNTVPG 355

Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           +S        G++D  +        ++ A+     I  +  P++T ++ Q A    G   
Sbjct: 356 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 415

Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339
            Y     +    SV         T   G  +   P ++    + L +   +S        
Sbjct: 416 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 475

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               ++  +P+Y  +     V+L SG T++L+G   +++    + I      P    L  
Sbjct: 476 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 531

Query: 400 NSRFNREETEIFIAATPFL 418
             +    ++ + +  TP +
Sbjct: 532 GRKRTSSKSVLVVLITPIV 550


>gi|66044764|ref|YP_234605.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255471|gb|AAY36567.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae B728a]
          Length = 578

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S+ +  +   N A   QV   V + E       Q+    +   +S       +       
Sbjct: 322 SNVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPG 381

Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           +S        G++D  +        ++ A+     I  +  P++T ++ Q A    G   
Sbjct: 382 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 441

Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339
            Y     +    SV         T   G  +   P ++    + L +   +S        
Sbjct: 442 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 501

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               ++  +P+Y  +     V+L SG T++L+G   +++    + I      P    L  
Sbjct: 502 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 557

Query: 400 NSRFNREETEIFIAATPFL 418
             +    ++ + +  TP +
Sbjct: 558 GRKRTSSKSVLVVLITPIV 576


>gi|323191604|gb|EFZ76862.1| outer membrane lipoprotein bfpB [Escherichia coli RN587/1]
          Length = 552

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 96/264 (36%), Gaps = 36/264 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            + +N LN   E QVT+ V I  V       +          +G      +     F + 
Sbjct: 294 NEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGV--LGSVSTSNFAAT 351

Query: 242 GGDFSVKGVLDR---FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297
            G  S  G L+     S + +L+ L     +  +   ++T +SGQ      G    Y + 
Sbjct: 352 SGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGNDRTYVSE 411

Query: 298 ------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---- 347
                  SS++   S +T   G +++  P V   G I L+    +SE V   N  D    
Sbjct: 412 IGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNNGFDQATV 471

Query: 348 ------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-----LLSKIPILGA 396
                 +P+        +  L +G T+VLAG  K   + + +G+      LL      GA
Sbjct: 472 NGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGVGTTSFKLLG-----GA 526

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           L      +   T   I  TP ++ 
Sbjct: 527 L----NGSASRTVTVICITPRIID 546


>gi|289647482|ref|ZP_06478825.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 542

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S+ +  +   N A   QV   V + E       Q+    +   +S       +       
Sbjct: 286 SNVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPG 345

Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           +S        G++D  +        ++ A+     I  +  P++T ++ Q A    G   
Sbjct: 346 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 405

Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339
            Y     +    SV         T   G  +   P ++    + L +   +S        
Sbjct: 406 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 465

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               ++  +P+Y  +     V+L SG T++L+G   +++    + I      P    L  
Sbjct: 466 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 521

Query: 400 NSRFNREETEIFIAATPFL 418
             +    ++ + +  TP +
Sbjct: 522 GRKRTSSKSILVVLITPIV 540


>gi|294086090|ref|YP_003552850.1| type II secretion PilQ [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665665|gb|ADE40766.1| Type II Secretion PilQ [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 822

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 23/265 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLD 252
           QV +++ +  V +D  +QI     +  S  G   S++    FG         F++     
Sbjct: 563 QVLIEIFMITVAKDFSRQINSAFRVLPSGGGNDVSEALLYGFGTGIAEARNSFNLNLTSP 622

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
                   + LE     R ++ PT+    G++A  +   +     +  S G       + 
Sbjct: 623 NRELTNFFNFLETNNLARVVSSPTILVADGETAEISRVQKARVSRIEQSAGDNGTVLTNT 682

Query: 313 GV-------VLHFTPTVLS--PGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVEL 362
            +        L  +   ++     + L ++ E +     +++  +          T    
Sbjct: 683 VIDEFLAPFQLRISEVKINRINKTVQLEVELEDTRFAAALSSVTNETDETTDTITTKFWS 742

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPL----LSKI-PILGALFRNSRFNREETEIFIAATPF 417
             G  +VLAGL ++       G+P     L  I PI+G    N   N   +E  I   P 
Sbjct: 743 APGDVVVLAGLTRNSETATTAGVPGTTGALGAISPIIG---GNDGINNNMSETIIFMAPT 799

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKA 442
           ++ P A +    P   +   +  KA
Sbjct: 800 VIDPSADKQ---PHSAFRTRNRRKA 821


>gi|152986390|ref|YP_001349821.1| type IVB pilus formation outer membrane protein [Pseudomonas
           aeruginosa PA7]
 gi|150961548|gb|ABR83573.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Pseudomonas aeruginosa PA7]
          Length = 569

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++N  N +   QV L V +  V      Q+G   ++   S               + +
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375

Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                   +LD  +        ++ AL +   + T+  P++T ++ QSA    G    Y 
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435

Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342
             S  +    V +           G  +   P V+  G + L+I   ++          G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +                 
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568


>gi|37955689|gb|AAP22528.1| PilN [Pseudomonas aeruginosa]
          Length = 569

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++N  N +   QV L V +  V      Q+G   ++   S               + +
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375

Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                   +LD  +        ++ AL +   + T+  P++T ++ QSA    G    Y 
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435

Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342
             S  +    V +           G  +   P V+  G + L+I   ++          G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +                 
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568


>gi|148807357|gb|ABR13431.1| putative PilN [Pseudomonas aeruginosa]
          Length = 569

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++N  N +   QV L V +  V      Q+G   ++   S               + +
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375

Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                   +LD  +        ++ AL +   + T+  P++T ++ QSA    G    Y 
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435

Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342
             S  +    V +           G  +   P V+  G + L+I   ++          G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +                 
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568


>gi|262274287|ref|ZP_06052098.1| putative type III secretion system EscC protein [Grimontia hollisae
           CIP 101886]
 gi|262220850|gb|EEY72164.1| putative type III secretion system EscC protein [Grimontia hollisae
           CIP 101886]
          Length = 489

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 96/271 (35%), Gaps = 14/271 (5%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM------NLLNIAGEDQ-VTLKVT 201
           G    + D + A       LSQ  +           +      N L + G  + V L   
Sbjct: 208 GQFTNLTDEEMATRAYRVKLSQGEKQALEEDEKSTKVQALPGPNALLVRGTQEEVKLAKR 267

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVL 260
           IA +     +Q+ F   +   ++   ++   D G    S G  D  V    +   F    
Sbjct: 268 IAALIDVKRRQLLFSLKVYDIATERKENLGIDGGWVNGSRGIYDIVVPPFTETKDFLKNF 327

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            AL      R++ E  L  +  Q   F  G +        S         +    L+ T 
Sbjct: 328 QALYSNGIARSVYETNLLVLENQQGQF--GKKQTATLALVSNKQIQTEKIEADNSLYVTG 385

Query: 321 TVLSPGRIGLRIQ-TEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKD 376
            +L  G++  R+Q  E +    G  +      P    +   + V +    T++L G    
Sbjct: 386 RLLPSGQVQARVQYVEEALDDEGEESEGSQRPPRVSSQSMTSEVYIKPDQTVILGGFDNT 445

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             +Q   G+PL+S +P++G LF+ +  ++ +
Sbjct: 446 VTEQRITGVPLISHLPLIGNLFKYTSESKHK 476


>gi|254238773|ref|ZP_04932096.1| type IV pilus protein PilN [Pseudomonas aeruginosa C3719]
 gi|126170704|gb|EAZ56215.1| type IV pilus protein PilN [Pseudomonas aeruginosa C3719]
          Length = 569

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++N  N +   QV L V +  V      Q+G   ++   S               + +
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375

Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                   +LD  +        ++ AL +   + T+  P++T ++ QSA    G    Y 
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435

Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342
             S  +    V +           G  +   P V+  G + L+I   ++          G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +                 
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568


>gi|1122402|emb|CAA92328.1| BfpB [Escherichia coli]
          Length = 553

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 96/264 (36%), Gaps = 36/264 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            + +N LN   E QVT+ V I  V       +          +G      +     F + 
Sbjct: 295 NEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGV--LGSVSTSNFAAT 352

Query: 242 GGDFSVKGVLDR---FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297
            G  S  G L+     S + +L+ L     +  +   ++T +SGQ      G    Y + 
Sbjct: 353 SGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGNDRTYVSE 412

Query: 298 ------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---- 347
                  SS++   S +T   G +++  P V   G I L+    +SE V   N  D    
Sbjct: 413 IGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNNGFDQATV 472

Query: 348 ------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-----LLSKIPILGA 396
                 +P+        +  L +G T+VLAG  K   + + +G+      LL      GA
Sbjct: 473 NGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGVGTTSFKLLG-----GA 527

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           L      +   T   I  TP ++ 
Sbjct: 528 L----NGSASRTVTVICITPRIID 547


>gi|107099850|ref|ZP_01363768.1| hypothetical protein PaerPA_01000870 [Pseudomonas aeruginosa PACS2]
          Length = 524

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++N  N +   QV L V +  V      Q+G   ++   S               + +
Sbjct: 271 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 330

Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                   +LD  +        ++ AL +   + T+  P++T ++ QSA    G    Y 
Sbjct: 331 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 390

Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342
             S  +    V +           G  +   P V+  G + L+I   ++          G
Sbjct: 391 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 450

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +                 
Sbjct: 451 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 505

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 506 TRNTKREVIVVLITPVVL 523


>gi|225677418|ref|ZP_03788385.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590562|gb|EEH11822.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 500

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 44/264 (16%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +N +      QV ++  I EV  D   +     ++     G       D      
Sbjct: 241 AVEEYINKVKKLASSQVMIEAKIVEVVLDD--KYLSGMNLNDLQDGTKSIINQD------ 292

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298
                 ++           ++  L++      ++ P + AI+ Q A  +    H+Y T  
Sbjct: 293 --NSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSD 350

Query: 299 -------SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN------ 344
                  S+ T  T + +   GVVL   P++      I + I   +S             
Sbjct: 351 IQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDIEY 410

Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                      D+P   +R+ ++ +++ SG  +V+ GL++    +            +L 
Sbjct: 411 VAQQSKMKLNSDIPIVEIREMNSMLKIKSGEVMVIGGLIEHREDKQS----------LLH 460

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
              +    N    E  I     +V
Sbjct: 461 QKSKRLANNIRTVETVIFLKATIV 484


>gi|213972108|ref|ZP_03400200.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tomato T1]
 gi|302061568|ref|ZP_07253109.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302131100|ref|ZP_07257090.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213923146|gb|EEB56749.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tomato T1]
          Length = 578

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 85/259 (32%), Gaps = 23/259 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S+ +  +   N +   QV   V + E       Q+    S    S       +       
Sbjct: 322 SNVETYLAKTNHSITQQVLFNVKVFEATLTDTDQLALNWSAVYKSLSTKWGLSLSNSVPG 381

Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           +S        G++D  +        ++ A+     I  +  P++T ++ Q A    G   
Sbjct: 382 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 441

Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339
            Y     +    SV         T   G  +   P ++    + L I   +S        
Sbjct: 442 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPF 501

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               ++  +P+Y  +     V+L SG T++L+G   D++    + I      P    L  
Sbjct: 502 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--DELSDNTDKI-GTGS-PGFFGLGG 557

Query: 400 NSRFNREETEIFIAATPFL 418
                  ++ + +  TP +
Sbjct: 558 GRTRMSSQSFLVVLITPIV 576


>gi|32481696|gb|AAP84210.1| PilN2 [Pseudomonas aeruginosa PA14]
          Length = 540

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++N  N +   QV L V +  V      Q+G   ++   S               + +
Sbjct: 287 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 346

Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                   +LD  +        ++ AL +   + T+  P++T ++ QSA    G    Y 
Sbjct: 347 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 406

Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342
             S  +    V +           G  +   P V+  G + L+I   ++          G
Sbjct: 407 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 466

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +                 
Sbjct: 467 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 521

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 522 TRNTKREVIVVLITPVVL 539


>gi|58698373|ref|ZP_00373287.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|225630071|ref|YP_002726862.1| type II secretion system protein, putative [Wolbachia sp. wRi]
 gi|58535127|gb|EAL59212.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|225592052|gb|ACN95071.1| type II secretion system protein, putative [Wolbachia sp. wRi]
          Length = 500

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 88/264 (33%), Gaps = 44/264 (16%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +N +      QV ++  I EV  D   +     ++     G       D      
Sbjct: 241 AVEEYINKVKKLASSQVMIEAKIVEVVLDD--KYLSGMNLNDLRDGTKSIINQD------ 292

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298
                 ++           ++  L++      ++ P + AI+ Q A  +    H+Y T  
Sbjct: 293 --NSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSD 350

Query: 299 -------SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN------ 344
                  S+ T  T + +   G+VL   P++      I + I   +S     V       
Sbjct: 351 IQKDTRNSNQTLITKMNSVPIGIVLIIHPSINIDTSEIFMDIHPTLSRINGYVKDPDIEY 410

Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                      D+P   +R+ ++ +++ SG  +V+ GL++    +            +L 
Sbjct: 411 VAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQS----------LLH 460

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
              +    N    E  I     +V
Sbjct: 461 QKSKRLANNIRTVETVIFLKATIV 484


>gi|296391291|ref|ZP_06880766.1| Type IV B pilus protein [Pseudomonas aeruginosa PAb1]
          Length = 528

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++N  N +   QV L V +  V      Q+G   ++   S               + +
Sbjct: 275 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 334

Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                   +LD  +        ++ AL +   + T+  P++T ++ QSA    G    Y 
Sbjct: 335 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 394

Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342
             S  +    V +           G  +   P V+  G + L+I   ++          G
Sbjct: 395 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 454

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +                 
Sbjct: 455 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 509

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 510 TRNTKREVIVVLITPVVL 527


>gi|315929956|gb|EFV09111.1| general secretory pathway protein D domain protein [Campylobacter
           jejuni subsp. jejuni 305]
          Length = 355

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 10/156 (6%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S K  +  L    + QV + V+I  V  +     G       +    S+    +   +F 
Sbjct: 201 SVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQ-NFNIGLNSQVNNENSFIQFQ 259

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G    Y+   
Sbjct: 260 NGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 319

Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPG 326
           SS G  + TT            G++L+  P +   G
Sbjct: 320 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDG 355


>gi|58696766|ref|ZP_00372303.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Drosophila simulans]
 gi|58537040|gb|EAL60176.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Drosophila simulans]
          Length = 495

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 88/264 (33%), Gaps = 44/264 (16%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +N +      QV ++  I EV  D   +     ++     G       D      
Sbjct: 236 AVEEYINKVKKLASSQVMIEAKIVEVVLDD--KYLSGMNLNDLRDGTKSIINQD------ 287

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298
                 ++           ++  L++      ++ P + AI+ Q A  +    H+Y T  
Sbjct: 288 --NSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSD 345

Query: 299 -------SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN------ 344
                  S+ T  T + +   G+VL   P++      I + I   +S     V       
Sbjct: 346 IQKDTRNSNQTLITKMNSVPIGIVLIIHPSINIDTSEIFMDIHPTLSRINGYVKDPDIEY 405

Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                      D+P   +R+ ++ +++ SG  +V+ GL++    +            +L 
Sbjct: 406 VAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQS----------LLH 455

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
              +    N    E  I     +V
Sbjct: 456 QKSKRLANNIRTVETVIFLKATIV 479


>gi|126696034|ref|YP_001090920.1| Type II secretory pathway component PulD-like protein
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543077|gb|ABO17319.1| Type II secretory pathway component PulD-like protein
           [Prochlorococcus marinus str. MIT 9301]
          Length = 572

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 112/321 (34%), Gaps = 46/321 (14%)

Query: 138 VEMVSDTV-VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           V++   T+  L G++ T  +  + V +           +Y    +   +  L+I  + QV
Sbjct: 236 VKVYGATIGPLVGLIATTDERLQTVTMVG--------EKYLIDLANGFLQKLDIK-QKQV 286

Query: 197 TLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAA-------DFGGKFVSEG 242
            L V + +V           +        I GS      +F +              +  
Sbjct: 287 ALSVKVLDVNMSDKNSSMKDYGGKLDDAFIIGSQGKIKSAFGSFLPVFPEGNSTDATTNP 346

Query: 243 GDFSVKGV--LDRFSFETVLHALERATAIRTLAEPTLTAIS---------------GQSA 285
           G  S +     D  SF  +L A       + LA PTL                   G   
Sbjct: 347 GINSSQRTTNFDNKSFFGLLEASIENGTTKVLASPTLLLSESSGSAGDGSSIGRKVGNEG 406

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVN 344
               G +          G+ + +    GV L      +     +   +   V+      N
Sbjct: 407 FVEIGDKVPVDATKGDGGSCTYSFETVGVKLGAKILGIDQNDYVTFTMTPIVTGISGSFN 466

Query: 345 A---GDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               G +     R+ DT  + +  G T+VL G++++        +PLL  +P+LG LFR+
Sbjct: 467 IVGCGSVSKINNRRLDTGAIRIKDGETLVLTGVIQETDIDTTYKLPLLGDLPLLGGLFRS 526

Query: 401 SRFNREETEIFIAATPFLVKP 421
            + ++++ E+ I  TP +++ 
Sbjct: 527 KQASKDKRELIILVTPKVLED 547


>gi|224373205|ref|YP_002607577.1| hypothetical protein NAMH_1181 [Nautilia profundicola AmH]
 gi|223589165|gb|ACM92901.1| hypothetical protein NAMH_1181 [Nautilia profundicola AmH]
          Length = 396

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 98/261 (37%), Gaps = 20/261 (7%)

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR--RDILKQIGFQHSIT 220
           + +  L    +N Y+N   +   N L I        K+  A +   ++  K+      IT
Sbjct: 112 VPKKVLKDYLKNFYSNYKYQIFQNRLLITCTPVDYFKIKTA-ISHLQNSYKKANINFLIT 170

Query: 221 GSSSGPSKSFAADFG--GKFVSEG-----GDFSVKGVLDRFSFETVLHALERATAIRTLA 273
             ++  +K    D      F S        D +V       +F   +  L    A  T++
Sbjct: 171 VINNKKAKEIGTDLNIKSPFHSSALFDLVTDTAVVSSSITNNFSAFIKFLNSKGAAETIS 230

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTG-------ATSVTTHDYGVVLHFTPTVLSPG 326
           +PT+  I   + +  S     Y T S +T         T +   D G+ ++     ++  
Sbjct: 231 KPTILLIDSSNYTLESVHSIPYVTKSVTTDKDGNPVTQTDLKYKDVGLKIYIKNVYITDR 290

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT-IVLAGLLKDDIQQLKEGI 385
            I   +   V   V   N  D P    +  +T V+L    +  ++AGL          G+
Sbjct: 291 SIDFDMDIYVESIVSYDN--DKPITDTKHFNTHVQLTKKSSGYLIAGLRTVTKISEDSGV 348

Query: 386 PLLSKIPILGALFRNSRFNRE 406
           P+L  IPILG LF+ ++ + E
Sbjct: 349 PVLKDIPILGILFQKNKKSVE 369


>gi|116052606|ref|YP_792921.1| Type IV B pilus protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587827|gb|ABJ13842.1| Type IV B pilus protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 545

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++N  N +   QV L V +  V      Q+G   ++   S               + +
Sbjct: 292 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 351

Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                   +LD  +        ++ AL +   + T+  P++T ++ QSA    G    Y 
Sbjct: 352 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 411

Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342
             S  +    V +           G  +   P V+  G + L+I   ++          G
Sbjct: 412 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 471

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +                 
Sbjct: 472 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 526

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 527 TRNTKREVIVVLITPVVL 544


>gi|330944277|gb|EGH46345.1| type II and III secretion system protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 492

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ +  +   N A   QV   V + E       Q+    +   +S       +       
Sbjct: 236 ANVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPG 295

Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           +S        G++D  +        ++ A+     I  +  P++T ++ Q A    G   
Sbjct: 296 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 355

Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339
            Y     +    SV         T   G  +   P ++    + L +   +S        
Sbjct: 356 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 415

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               ++  +P+Y  +     V+L SG T++L+G   +++    + I      P    L  
Sbjct: 416 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 471

Query: 400 NSRFNREETEIFIAATPFL 418
             +    ++ + +  TP +
Sbjct: 472 GRKRTSSKSVLVVLITPIV 490


>gi|83716256|ref|YP_438966.1| type IV pilus biogenesis protein PilN [Burkholderia thailandensis
           E264]
 gi|83650081|gb|ABC34145.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           thailandensis E264]
          Length = 878

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 106/318 (33%), Gaps = 49/318 (15%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             L+  ++  ++     V   +      G + ++ D+   +E    F++Q  R+      
Sbjct: 581 NGLQSAIQSMLSRYGSSVSSPA-----TGSI-SVTDTPDVLERVAAFMTQQNRSL----- 629

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
                         QV L VT+  V        G   S+   +     +    F    ++
Sbjct: 630 ------------SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLT 677

Query: 241 EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           +  D S   +     F     ++ AL +   +R     ++T ++ Q        Q  Y  
Sbjct: 678 KPADLSATVLSPTSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLA 737

Query: 298 VSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQT---------EVSEPV 340
             S+T   +V +           G  +   P VL  G + L+  T         EVS   
Sbjct: 738 SVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSST 797

Query: 341 IGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            G +A  +  P   +R     V + SG T+V++G    +    + G+      P + AL 
Sbjct: 798 GGRSAARIQTPDVDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALG 853

Query: 399 RNSRFNREETEIFIAATP 416
                 R    I I  TP
Sbjct: 854 GGYEAQRAREVIVILITP 871


>gi|327538217|gb|EGF24896.1| protein containing Type II and III secretion system domain
           [Rhodopirellula baltica WH47]
          Length = 109

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 44/92 (47%)

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            +  +V      ++    P    R   TTV +  G TIV+ GL++ +       IP LS+
Sbjct: 9   EVSEDVRNATPALSINQYPIINRRSVSTTVSVKDGKTIVIGGLVQRETVDRVNRIPGLSR 68

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           +P +G LF+ ++    + E+ I  +P +V+  
Sbjct: 69  LPGVGYLFQTTQRQTRDAEVVIFISPRIVRST 100


>gi|330952555|gb|EGH52815.1| type II and III secretion system protein [Pseudomonas syringae Cit
           7]
          Length = 547

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 23/245 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV   V + E       Q+    +   +S       +       +S        G++D
Sbjct: 305 TQQVLFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVD 364

Query: 253 RFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
             +        ++ A+     I  +  P++T ++ Q A    G    Y     +    SV
Sbjct: 365 TANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASV 424

Query: 308 --------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRV 353
                    T   G  +   P ++    + L I   +S            ++  +P+Y  
Sbjct: 425 GSSTAITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPFTSNGSSVQIPNYDA 484

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           +     V+L SG T++L+G   D++    + I      P    L         ++ + + 
Sbjct: 485 KSLSPKVKLRSGQTLILSGF--DELNDNTDKI-GTGS-PGFFGLGGGRTRTSSQSFLVVL 540

Query: 414 ATPFL 418
            TP +
Sbjct: 541 ITPIV 545


>gi|37525675|ref|NP_929019.1| hypothetical protein plu1738 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785103|emb|CAE14031.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 534

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 92/258 (35%), Gaps = 27/258 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K  ++  N     QV L V I  +  D   Q G   S+   S+      + + G   + +
Sbjct: 285 KDYIDQQNKLLTTQVVLNVKILNLTFDRADQYGVDWSLAYKSA--RIGLSNESGNSVIDD 342

Query: 242 GGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           GG  +   +L         ++ AL     +  + +P++T ++ Q+       Q  Y    
Sbjct: 343 GGVSTNIHILKGPFSDSTLLIKALSAQGKVSIVTQPSVTTLNLQAVPMQVATQTGYVASI 402

Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVN 344
           S+T    V         T   G  +   P  ++  +I L+    +S+             
Sbjct: 403 SNTSTPQVGTSVGIEPATVTTGFNMLMLPYAMADKQILLQYNISLSDLKRLEKFGKEETG 462

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS--KIPILGALFRNSR 402
              +P+  +R     V L SG T+VL+G  +      + G   L      +LG    + +
Sbjct: 463 QVQLPTIDLRAFSQKVRLHSGETLVLSGFEQQSDTSDRSG---LGSPDNQLLG---GSRQ 516

Query: 403 FNREETEIFIAATPFLVK 420
             R    I +  TP +V 
Sbjct: 517 GKRNHNVIVVMITPIVVD 534


>gi|218195539|gb|EEC77966.1| hypothetical protein OsI_17332 [Oryza sativa Indica Group]
          Length = 1496

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 58/187 (31%), Gaps = 37/187 (19%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228
           + V++ L+     QV ++  I EV  + + Q G Q      S G                
Sbjct: 229 RAVIDQLD-GRRAQVLVESLIVEVAANKVAQFGIQWQGVMGSYGNGTIGVIGTNSSQGGG 287

Query: 229 ------------SFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLA 273
                                  + G   +V     V   +    + + LE       L+
Sbjct: 288 ANILSLALAAASGNTTTIANSAANLGAGLNVGIAPRVNGNYYLGALANFLESTGDANVLS 347

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS--SSTGA------TSVTTHDYGVVLHFTPTVLSP 325
            P L  +  + A    G    + T S  +STG+      T+V   D  ++L  +P   + 
Sbjct: 348 TPNLMTLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVRLMLRVSPQSTNT 407

Query: 326 GRIGLRI 332
           G     +
Sbjct: 408 GTSNSHL 414


>gi|91791048|ref|YP_551999.1| type II and III secretion system protein [Polaromonas sp. JS666]
 gi|91700928|gb|ABE47101.1| type II and III secretion system protein [Polaromonas sp. JS666]
          Length = 566

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 89/253 (35%), Gaps = 26/253 (10%)

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDF 245
           N A   QV++ V +  V  D     G          +++  + S A        +  G+ 
Sbjct: 319 NQALNRQVSVNVRVLSVALDDSDDYGINWDAVYKNLATASNAYSIALKTAFPIANGAGNL 378

Query: 246 SVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            +       S       ++ AL     +  L   TL  ++ Q +    G +  Y   SS+
Sbjct: 379 VISAPATSGSRWAGSSAMISALSSQGRVTELTSSTLVTLNNQPSPVNVGRRVSYLQSSST 438

Query: 302 TGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGD 347
           T   +V         T   G  +   P ++    I L+   ++S          G ++  
Sbjct: 439 TQTANVGSTSSLTPGTIQTGFSMTLIPHIIDSREILLQYSIDLSSLLQLTTISSGTSSIQ 498

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P          V+L SG T+V+AG  +D++  +  G+   +    LG    +   +++ 
Sbjct: 499 APDISTSNFIQRVKLLSGETLVVAGFDQDNLSAVSNGV-GAADNVALG----SRNGSKKR 553

Query: 408 TEIFIAATPFLVK 420
             I +   P L +
Sbjct: 554 NMIVVMIQPNLAQ 566


>gi|42520368|ref|NP_966283.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|42410106|gb|AAS14217.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Drosophila melanogaster]
          Length = 500

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 79/226 (34%), Gaps = 34/226 (15%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +N +      QV ++  I EV  D   +     ++     G       D      
Sbjct: 241 AVEEYINKVKKLASSQVMIEAKIVEVVLDD--KYLSGMNLNDLQDGTKSIINQD------ 292

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298
                 ++           ++  L++      ++ P + AI+ Q A  +    H+Y T  
Sbjct: 293 --NSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSD 350

Query: 299 -------SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN------ 344
                  S+ T  T + +   GVVL   P++      I + I   +S             
Sbjct: 351 IQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDIEY 410

Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
                      D+P   +R+ ++ +++ SG  +V+ GL++    + 
Sbjct: 411 VAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQ 456


>gi|76819723|ref|YP_335816.1| hypothetical protein BURPS1710b_A0657 [Burkholderia pseudomallei
           1710b]
 gi|76584196|gb|ABA53670.1| unknown [Burkholderia pseudomallei 1710b]
          Length = 888

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 101/318 (31%), Gaps = 49/318 (15%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             L+  ++  ++     V   +      G + ++ D+   +E    F++Q  R+      
Sbjct: 591 NGLQSAIQSMLSRYGSSVASPA-----TGSI-SVTDTPDVLERVAAFMAQQNRSL----- 639

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
                         QV L VT+  V        G   ++   +          F    ++
Sbjct: 640 ------------SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALT 687

Query: 241 EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
              D S   +     F     ++ AL +   +R     ++T ++ Q        Q  Y  
Sbjct: 688 APADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLA 747

Query: 298 VSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVN 344
             S+T   +V +           G  +   P VL  G + L+  T +S       V    
Sbjct: 748 SVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSST 807

Query: 345 AGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            G        P   +R     V + SG T+V++G    +    + G+      P + AL 
Sbjct: 808 GGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALG 863

Query: 399 RNSRFNREETEIFIAATP 416
                 R    I I  TP
Sbjct: 864 GGYEAQRAREVIVILITP 881


>gi|289678006|ref|ZP_06498896.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. syringae FF5]
          Length = 305

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 13/189 (6%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV 336
           +  Q A             ++S    ++     G  L  TP  L      ++ L +  E 
Sbjct: 1   LENQPAVIDFSRTEY--LTATSERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIED 58

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
            +  I       PS R     T   +   G++V+ G    +       +PLL  IP +G 
Sbjct: 59  GQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGK 118

Query: 397 -LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
            LF++      + E     TP L+      D   P  +    +       +++ +I   +
Sbjct: 119 LLFQSRSRELSQRERLFILTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERR 171

Query: 456 EASEVEGQN 464
           +  E+  + 
Sbjct: 172 DGGELPTRG 180


>gi|254003197|ref|YP_003052663.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Methylovorus sp. SIP3-4]
 gi|253987280|gb|ACT52136.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Methylovorus sp. SIP3-4]
          Length = 559

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 104/288 (36%), Gaps = 30/288 (10%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           + V  + T       N    +  ++ +   N+A   QV + V +  V        G   +
Sbjct: 275 KVVVTAATGTITVSDNPQVLAQVERYVQQQNMAMGRQVVVNVHVYSVSLSNSDSYGINWN 334

Query: 219 ITGSSSGPSKSFA-----------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
              +S   +  F             +   K ++  G  S   +      + +  AL +  
Sbjct: 335 AVYNSLSGNFGFTLSNAFAPETGSTNLALKILATAGSASNSELKAFAGSQVMFDALSKQG 394

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTT-----HDYGVVLHF 318
            +  +   ++T ++ Q A    G Q  Y   SS+T    G+ SVTT      + G  ++ 
Sbjct: 395 RVSQITSSSITTLNNQPAPIQVGRQRTYLASSSTTIGTVGSPSVTTLQPGLINTGFSMNL 454

Query: 319 TPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P +L    + L+   ++S          G ++   P    R     V+L SG T+V+ G
Sbjct: 455 VPHILDSKELLLQYAVDLSSLIGITTVTSGTSSIQTPEIETRNFLQRVKLNSGDTLVVTG 514

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +   +   +GI   S + + G L  N   N     + +   P +++
Sbjct: 515 FEQTQDEANMQGIGDASNVSLGGGLTGNKGRNV----LVVLIQPVIIE 558


>gi|37523454|ref|NP_926831.1| hypothetical protein gll3885 [Gloeobacter violaceus PCC 7421]
 gi|35214458|dbj|BAC91826.1| gll3885 [Gloeobacter violaceus PCC 7421]
          Length = 299

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 93/218 (42%), Gaps = 15/218 (6%)

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
           Q+S   + +G   +      G   +      +   ++ +      ++AL+      TL +
Sbjct: 60  QYSGLAAGAGALSTAPLGNNGVLPNRSALTLTFANIVLQLQLLQQVNALQ------TLID 113

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGR-IGLR 331
             L    G++A+ +   Q        S G   +S    +    L+ TP VL   + + + 
Sbjct: 114 QQLVVSDGETATISQNVQFRIPQTIVSNGTALSSTQAINARTTLNLTPMVLPSKKQVAIS 173

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           ++ + S+P     +G+         D   + L SGG  +L G+ + D   ++  +P+LS 
Sbjct: 174 VRGDFSDP---QGSGEGLVINTNSIDIPNLRLDSGGVALLGGITRHDEANIEYRVPVLSA 230

Query: 391 IPILGALFRNSRFNREETEIFIAATPFL-VKPVAMRDL 427
           IPILG LF++S    ++  + +   P +  +P+A  +L
Sbjct: 231 IPILGDLFKSSNRVVKDQRLLVMIEPVIQEQPLAGAEL 268


>gi|237801977|ref|ZP_04590438.1| type II and III secretion system protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024835|gb|EGI04891.1| type II and III secretion system protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 300

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ +  +   N A   QV   V + E       Q+    +   +S       +       
Sbjct: 44  ANVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPG 103

Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           +S        G++D  +        ++ A+     I  +  P++T ++ Q A    G   
Sbjct: 104 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 163

Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339
            Y     +    SV         T   G  +   P ++    + L +   +S        
Sbjct: 164 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 223

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               ++  +P+Y  +     V+L SG T++L+G   +++    + I      P    L  
Sbjct: 224 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 279

Query: 400 NSRFNREETEIFIAATPFL 418
             +    ++ + +  TP +
Sbjct: 280 GRKRTSSKSVLVVLITPIV 298


>gi|222872747|gb|EEF09878.1| predicted protein [Populus trichocarpa]
          Length = 414

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 107/325 (32%), Gaps = 67/325 (20%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           +  S+ + P   +   A I +    + +   +++  ++ +   +      + V++    D
Sbjct: 135 AAGSIMRTPVTLQFRDANIRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNAAIED 191

Query: 79  VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL----IERDIAH 122
            V            V +  T++++                ++   L +        D   
Sbjct: 192 AVDLILLQSQLDKKVLNANTLFIYPATP---------AKQQEYQELKVRTFQLSNVDSKQ 242

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           ++  L+  +    + V+  ++TV + G   TI+ +++ +   +                 
Sbjct: 243 VQSLLKSLLKIKEVVVDERANTVTIRGTPDTIRVAEQMIAAQD----------------- 285

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
                     E +V L+V + EV R+ L  +G     + + + P+   A  +G       
Sbjct: 286 --------LPEPEVMLEVQVLEVSRERLTDLGIAWPNSFTMATPAS--ATTWGVLHHLTA 335

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            +  V  +    +F+         T    LA P +   + + A    G +    + SS+ 
Sbjct: 336 NELEVSPLSATANFKL------TDTDANLLASPRIRTRNKEKARILIGDKVPVISSSSTP 389

Query: 303 G------ATSVTTHDYGVVLHFTPT 321
                    ++   D G+ L   P 
Sbjct: 390 STSGPSFTQTIQYLDVGIKLEVEPQ 414


>gi|325529072|gb|EGD06072.1| putative type II secretory pathway [Burkholderia sp. TJI49]
          Length = 220

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 20/173 (11%)

Query: 313 GVVLHFTPTVLSP----------------GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           G  +  TP ++                    + + I  +    V G    ++P  + R  
Sbjct: 18  GTSIKVTPMIVDDAIRNAAAVSGSPASNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNI 77

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T   +  G ++++AG   D++   K G+P LS IP++G LF+ +  +    E F   TP
Sbjct: 78  VTKTMIDEGRSLLIAGFNDDEVHLNKSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTP 137

Query: 417 FLVKPVAM--RDLSRPDDHYSVEDDAKAFFFNR--VNKIYGPKEASEVEGQNY 465
            +V   +M   D S  +       DA      R   N I  P     + G  +
Sbjct: 138 RVVSTASMYAPDGSPVNPGVDAPADASGVSMYRPPDNDIAVPLTPQPLPGTKF 190


>gi|269469298|gb|EEZ80806.1| Type II secretory component HofQ [uncultured SUP05 cluster
           bacterium]
          Length = 85

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 31/75 (41%)

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           +   P+   R+  TT+ +     +V+ G+           +P    +P++G LF   + +
Sbjct: 11  SNTAPAINKREITTTLLVKDNTIVVIGGVFTQTTVDATNKVPFFGDLPLIGGLFSYKKDS 70

Query: 405 REETEIFIAATPFLV 419
               E+ I   P ++
Sbjct: 71  DVRKELLIFLAPRII 85


>gi|330862439|emb|CBX72597.1| hypothetical protein YEW_HP33920 [Yersinia enterocolitica W22703]
          Length = 149

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 60/153 (39%), Gaps = 11/153 (7%)

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQ 333
           +  ++   A         + T         + +   G +L  TP ++       + L + 
Sbjct: 1   MVTLNNIQAVLD--KNVTFYTKLQGDKVAKLESITSGSLLRVTPRMIDSDGVKEVLLNLN 58

Query: 334 TEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            +  +    +++ + +P  +     T   L  G +++L G ++D   + +  IPLL  IP
Sbjct: 59  IQDGQQQAPLSSSEPLPEIQNSDISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIP 118

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           +LG LFR++               FL+K V + 
Sbjct: 119 LLGGLFRSTNKQSHS-----VVRLFLIKAVPVN 146


>gi|325271188|ref|ZP_08137740.1| Type II secretory pathway, component PulD [Pseudomonas sp. TJI-51]
 gi|324103677|gb|EGC00972.1| Type II secretory pathway, component PulD [Pseudomonas sp. TJI-51]
          Length = 360

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 93/264 (35%), Gaps = 36/264 (13%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
           RD+A+L  TL+            V+  V + G   +   S    + S   L     +   
Sbjct: 118 RDVAYLSETLQPLFEGR----FAVNRQVSVPGATPSPLSSP---QGSAASLVSRDSDHLV 170

Query: 178 NSSSKKVMNLLNIAGED------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              SK  +  + +          +V ++  + EV+             TG S+G + S A
Sbjct: 171 FVGSKAEIEKVKLLLPQIDIAMGEVMVRGVVYEVQ-------------TGDSNGSAFSLA 217

Query: 232 ADFG---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           A            G  F  +  L    F  VL AL      R +++P+L   SG  A+F+
Sbjct: 218 ASLLKGKLNITLAGNPFDNQVSLSTSDFSAVLSALSSDNRFRVVSQPSLRVRSGAEATFS 277

Query: 289 SGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            G +            S     SV   D GV+ +  P V     + L +  ++S  V   
Sbjct: 278 VGAEVPVLGAVSYAQGSGEPIQSVQYRDSGVIFNLRPQVRES-TVDLVVDQQLSNFVQTT 336

Query: 344 NA-GDMPSYRVRKADTTVELPSGG 366
               + P+   R+  T+V++    
Sbjct: 337 TGVNNSPTLTKRQLTTSVQMRDRE 360


>gi|157164174|ref|YP_001467421.1| hypothetical protein CCC13826_0019 [Campylobacter concisus 13826]
 gi|157164249|ref|YP_001467411.1| ABC transporter ATP-binding protein YojI [Campylobacter concisus
           13826]
 gi|157101403|gb|EAT97210.2| hypothetical protein CCC13826_0019 [Campylobacter concisus 13826]
 gi|157101412|gb|EAT97201.2| hypothetical protein CCC13826_1100 [Campylobacter concisus 13826]
          Length = 389

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 9/171 (5%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------TVSSSTGA 304
           +++ S  ++++ L+       +  P +T I  + +   S  +   +        S S   
Sbjct: 180 VNKDSVTSLINLLKEKGVSDLIYNPRVTVIDNKDSVIESVIKTPIQKSSIDIQNSQSITT 239

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
             V   D G+ L+ +  +++   +   +   +   +        P    R   T V L  
Sbjct: 240 NQVEYQDVGLKLYISSVLITNDSVSFTLDLYIENLLDDTLT---PRISSRHLKTNVYLTD 296

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             + ++ G+   +  +  + IP +  IPILG +         +    I  T
Sbjct: 297 TNSFLIGGINSKETIKSTKTIPFIENIPILGDITTYKSEKTSDYSFSIFIT 347


>gi|153930668|ref|YP_001393312.1| PilN family type IV pilus biogenesis protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|152958209|gb|ABS45671.1| type IV pilus biogenesis protein, PilN family [Yersinia
           pseudotuberculosis IP 31758]
          Length = 564

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 87/258 (33%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVS 240
           K  +   NI    QV L V I  V    L  +G   + I  S SG       +      +
Sbjct: 312 KTFIASENIKITQQVLLNVKILSVSLKDLDDLGLDWNVIYKSMSGKWGINLKNAFSDLAT 371

Query: 241 EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
                S+  +     F+    ++ AL     +  +  P++T ++ Q A      Q  Y  
Sbjct: 372 NATSGSISILDPNSQFDGTTMLIKALSEQGKVSVVTSPSITTLNLQPAPVQVSRQTSYLA 431

Query: 296 --KTVSSSTGATSVT----THDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIG 342
              T S++   T  +    T   G  +   P ++           I L    ++ +    
Sbjct: 432 SRSTTSTTNAGTETSLTPGTVTTGFNMSLLPAIIPDTRDLLLQYNINLSSLIQIRKIGTE 491

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN-S 401
            N  +MP    R     V+L SG T+V++G  +      K G+         G  F    
Sbjct: 492 NNQIEMPDTDSRIFSQQVKLRSGETLVISGFEQTADNANKSGV---GDAEFWG--FGGAR 546

Query: 402 RFNREETEIFIAATPFLV 419
             N     I +  TP L+
Sbjct: 547 SRNSTRDIIVVIITPVLL 564


>gi|170765827|ref|ZP_02900638.1| outer membrane lipoprotein BfpB [Escherichia albertii TW07627]
 gi|170124973|gb|EDS93904.1| outer membrane lipoprotein BfpB [Escherichia albertii TW07627]
          Length = 545

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 91/256 (35%), Gaps = 23/256 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSE 241
           + +  LN   E QVT+ V +  V    +  +     ++   + G   S  ++F     + 
Sbjct: 290 EYIQKLNKQLERQVTIDVAVYSVSTSDVSNLSMSLQALLTRNGGVLGSITSNFPAASGTP 349

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                + G  +  + + +L+ L  +  +  +    +T +SGQ      G    Y +   +
Sbjct: 350 TITGFLNGNGNSNN-QVLLNLLATSGKVSVVTSAAVTTMSGQPVPLKVGNDRTYVSQIGT 408

Query: 302 TGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------- 347
                      S ++   G +++  P+V   G I L+    +S  V   +  D       
Sbjct: 409 VMGQTSTTSSASTSSVTTGFLMNLLPSVGEDGNILLQYGITISSLVGSNDGFDQATVNGT 468

Query: 348 ---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+        +  L +G T++LAG  +   +    G   L K P    L  +    
Sbjct: 469 IIQLPNVDSTTFVQSSLLKNGNTLILAGYEQKRNEVSDSG---LGK-PGFKLLGGSRNGK 524

Query: 405 REETEIFIAATPFLVK 420
                  I+ TP ++ 
Sbjct: 525 DSREIKIISITPRIID 540


>gi|254252520|ref|ZP_04945838.1| type II and III secretion system protein [Burkholderia dolosa
           AUO158]
 gi|124895129|gb|EAY69009.1| type II and III secretion system protein [Burkholderia dolosa
           AUO158]
          Length = 200

 Score = 86.2 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVI 100
            G    I + +     +     +Q V V DP  ADV++       ++ L  K  G  NV+
Sbjct: 21  AGASGTIELAVGAQRQISAGRALQRVAVGDPAVADVLIMKGSRSGSVLLVAKAPGATNVM 80

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           L      +    ++ +      ++   +  +  S  RV     T VL G   ++   +R
Sbjct: 81  LWERGRDEPTVWNVEV------VDAAAQAVLDGSTPRVNAYGGTAVLRGTAASLDAHER 133


>gi|194437943|ref|ZP_03070037.1| outer membrane lipoprotein BfpB [Escherichia coli 101-1]
 gi|194423164|gb|EDX39157.1| outer membrane lipoprotein BfpB [Escherichia coli 101-1]
          Length = 545

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 91/256 (35%), Gaps = 23/256 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSE 241
           + +  LN   E QVT+ V +  V    +  +     ++   + G   S  ++F     + 
Sbjct: 290 EYIQKLNKQLERQVTIDVAVYSVSTSDVSNLSMSLQALLTRNGGVLGSITSNFPAASGTP 349

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                + G  +  + + +L+ L  +  +  +    +T +SGQ      G    Y +   +
Sbjct: 350 TITGFLNGNGNSNN-QVLLNLLATSGKVSVVTSAAVTTMSGQPVPLKVGNDRTYVSQIGT 408

Query: 302 TGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------- 347
                      S ++   G +++  P+V   G I L+    +S  V   +  D       
Sbjct: 409 VMGQTSTTSSASTSSVTTGFLMNLLPSVGEDGNILLQYGITISSLVGSNDGFDQATVNGT 468

Query: 348 ---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+        +  L +G T++LAG  +   +    G   L K P    L  +    
Sbjct: 469 IIQLPNVDSTTFVQSSLLKNGNTLILAGYEQKRNEISDSG---LGK-PGFKLLGGSRNGK 524

Query: 405 REETEIFIAATPFLVK 420
                  I+ TP ++ 
Sbjct: 525 DSREIKIISITPRIID 540


>gi|283779820|ref|YP_003370575.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
 gi|283438273|gb|ADB16715.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
          Length = 1305

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 81/243 (33%), Gaps = 45/243 (18%)

Query: 221  GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
            G   G   S    FGG        F    +L       +L+A +       L  P +T  
Sbjct: 1049 GFRQGSFGSAVPQFGGFDAGTAASFGFA-ILSDIEVFFLLNAAQGDDRTNILQAPKVTLF 1107

Query: 281  SGQSASFTSGGQHLY-----KTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGR-IGLRI 332
            +GQ A  +   Q  +       V     A    +   + G  L     V    R + L +
Sbjct: 1108 NGQQAFVSDTSQRPFVISVIPVVGDFAAAQQPVIAVLNEGTSLSVQGVVSPDRRFVRLTM 1167

Query: 333  QTEVSEPV--------------------IGVNAGDMPSYRVRKAD--TTVE--------- 361
                S                          N  +  +  VR     TTV+         
Sbjct: 1168 VPFFSTIGDVDTFTFTGSTTTDSGSVIQDPSNPDENATDNVRTTTEGTTVQLPTFAFTTV 1227

Query: 362  -----LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
                 +P GGT++L G+ +    + + G+PLLSK+P +  LF+N    RE   + +  TP
Sbjct: 1228 TTTVSVPDGGTVLLGGIKRLREGRNERGVPLLSKVPYVSRLFKNVGIGREAQSLMMMVTP 1287

Query: 417  FLV 419
             ++
Sbjct: 1288 RII 1290


>gi|213419653|ref|ZP_03352719.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 173

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 10/132 (7%)

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGG 366
           YG ++   P   + G+I + +  E             +   +P        T   +P G 
Sbjct: 17  YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGK 76

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G  +D      + IP+L K+P++G+LFR S  N+           F+++P  + D
Sbjct: 77  SLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN-----VVRVFMIEPKEIVD 131

Query: 427 LSRPDDHYSVED 438
              PD   SV +
Sbjct: 132 PLTPDASESVNN 143


>gi|196228122|ref|ZP_03126989.1| peptidase M56 BlaR1 [Chthoniobacter flavus Ellin428]
 gi|196227525|gb|EDY22028.1| peptidase M56 BlaR1 [Chthoniobacter flavus Ellin428]
          Length = 1079

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 86/304 (28%), Gaps = 73/304 (24%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               Q+ ++    E+   + K    Q                          G      +
Sbjct: 358 PASPQIEIEAKFVEIHSPVAKSSDVQAG---------------------DAEGQADRPTI 396

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT------VSSSTGA 304
                F+ ++ +L +   +  L+ P +T  + Q A   +  +    T       S +   
Sbjct: 397 FTDPQFQLIIRSLNQKKGVDILSSPRVTTRANQRAVVEAVREFRTPTEWEWRKESGTWKP 456

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIG-------------LRIQTEVSEPVIGVNAGDMP-- 349
           T   T + G+ L   P +   G +              L + T  +       A      
Sbjct: 457 TKFETKNLGISLEVEPRLGRDGTLEVHAISSVVEFLGFLDLDTGKTILASRTAADGNVEV 516

Query: 350 -----------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                       Y  R+ ++TV L SG T  +A L +    +  E               
Sbjct: 517 PPVVPGHRSKGIYSERRKESTVNLKSGETFQIADLPETADTKALEK-------------- 562

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
                +     I +  +P L+ P +    +  D   S     +      ++ + GPK+  
Sbjct: 563 -----HASRKRIMVFISPRLIAPASAAAGTGSDATGSPGAQGELVLHGTLD-LNGPKQMV 616

Query: 459 EVEG 462
            V G
Sbjct: 617 AVSG 620


>gi|209922067|ref|YP_002296140.1| lipoprotein PilN [Escherichia coli SE11]
 gi|209915245|dbj|BAG80318.1| lipoprotein PilN [Escherichia coli SE11]
          Length = 560

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 85/261 (32%), Gaps = 26/261 (9%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           +  + ++  N     QV L V +  V     +Q G   ++   S   + +   +  G F 
Sbjct: 297 AVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFT 356

Query: 240 SEGG------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                     D +            ++ AL     +  +     T  +          Q 
Sbjct: 357 GATSAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQT 416

Query: 294 LYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---- 341
           +Y   S++T  T V             G  +   P +   G + L++   +S+P      
Sbjct: 417 VYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSF 476

Query: 342 ----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
               G +  +MP  ++R     V L  G ++V+ G  +++    K G       P+ G  
Sbjct: 477 TSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGT-FTPANPLFG-- 533

Query: 398 FRNSRFNREETEIFIAATPFL 418
             +     E + + I  TP  
Sbjct: 534 -GSQTGKNERSTLVIIITPTF 553


>gi|149190975|ref|ZP_01869237.1| hypothetical protein VSAK1_26575 [Vibrio shilonii AK1]
 gi|148835218|gb|EDL52193.1| hypothetical protein VSAK1_26575 [Vibrio shilonii AK1]
          Length = 479

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 101/312 (32%), Gaps = 28/312 (8%)

Query: 125 MTLRRFIADSNIRVEMVSD-TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
             L     D +I  E+ +D   VL G              S         +     + + 
Sbjct: 180 QFLNIGYQDVDIISEIANDVRNVLGG---DEAAKNAVTASSNMSAITVTTSPDKMQTVEH 236

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEG 242
           ++         QV L V I E   D+  + G   ++   S  G  K F           G
Sbjct: 237 LIEHYQKELSKQVLLDVRIVEFFSDVGTERGVNWNLVYDSGEGIVKFFVPGTNTLSKQAG 296

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-KTVSSS 301
              + +G       E ++  LE+  ++ +    T    + Q A  T      Y   VSS+
Sbjct: 297 YGMAFEGTGKWSGSEALIKVLEQQGSVSSETPVTYMVSNNQPARITQQRDVPYLYEVSSN 356

Query: 302 TGATSVT------THDYGVVLHFTPTVLSPGRIGL-------RIQTEVSEPVIGVNAGDM 348
           +   +V+      T   GV    T  V S   + L       +I  E ++ V  ++ G +
Sbjct: 357 SNENTVSTGVTRKTEVEGVDFMVTANVQSD-YVSLRMSGQLQKITKEETKKVENIDLGFL 415

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            + +  +     +L  G T V+A + +      +              LF  +    E  
Sbjct: 416 -TTQKSEITFANKLRYGQTYVIASVKQQTKTAEETK-------NFFSTLFGGTGSKNETI 467

Query: 409 EIFIAATPFLVK 420
           E  +  TP  V+
Sbjct: 468 ETLVLLTPRKVQ 479


>gi|9507539|ref|NP_052546.1| lipoprotein [Plasmid ColIb-P9]
 gi|32470260|ref|NP_863484.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|168758374|ref|ZP_02783381.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli O157:H7 str. EC4401]
 gi|168770673|ref|ZP_02795680.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli O157:H7 str. EC4486]
 gi|194447046|ref|YP_002039161.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194447207|ref|YP_002043952.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|195940171|ref|ZP_03085553.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli O157:H7 str. EC4024]
 gi|256367618|ref|YP_003108177.1| lipoprotein [Escherichia coli]
 gi|307313385|ref|ZP_07593008.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli W]
 gi|4512536|dbj|BAA75185.1| lipoprotein [Plasmid ColIb-P9]
 gi|4903089|dbj|BAA77974.1| lipoprotein [Plasmid R64]
 gi|20521628|dbj|BAB91692.1| PilN type IV pilus secretin [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|70610254|gb|AAZ05401.1| lipoprotein [Salmonella enterica]
 gi|85813727|emb|CAJ65888.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|189354781|gb|EDU73200.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli O157:H7 str. EC4401]
 gi|189360460|gb|EDU78879.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli O157:H7 str. EC4486]
 gi|194358490|gb|ACF56934.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194405511|gb|ACF65732.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|228480873|gb|ACQ42199.1| lipoprotein [Escherichia coli]
 gi|306906807|gb|EFN37317.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli W]
 gi|315063763|gb|ADT78089.1| Type IVB thin prepilin secretin [Escherichia coli W]
 gi|321271467|gb|ADW79557.1| IncI1 conjugal transfer protein PilN [Escherichia coli]
 gi|321271565|gb|ADW79654.1| IncI1 conjugal transfer protein PilN [Escherichia coli]
 gi|321271661|gb|ADW79749.1| IncI1 conjugal transfer secretin protein PilN [Salmonella enterica
           subsp. enterica serovar Kentucky]
 gi|323133139|gb|ADX20567.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323381016|gb|ADX53283.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli KO11]
 gi|323959238|gb|EGB54902.1| R64 PilN family protein type IVB pilus formation outer membrane
           protein [Escherichia coli H489]
 gi|330907922|gb|EGH36445.1| incI1 plasmid conjugative transfer lipoprotein PilN [Escherichia
           coli AA86]
 gi|332346621|gb|AEE59953.1| IncI1 conjugal transfer secretin protein PilN [Escherichia coli
           UMNK88]
          Length = 560

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 85/261 (32%), Gaps = 26/261 (9%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           +  + ++  N     QV L V +  V     +Q G   ++   S   + +   +  G F 
Sbjct: 297 AVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFT 356

Query: 240 SEGG------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                     D +            ++ AL     +  +     T  +          Q 
Sbjct: 357 GATSAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQT 416

Query: 294 LYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---- 341
           +Y   S++T  T V             G  +   P +   G + L++   +S+P      
Sbjct: 417 VYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSF 476

Query: 342 ----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
               G +  +MP  ++R     V L  G ++V+ G  +++    K G       P+ G  
Sbjct: 477 TSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGT-FTPANPLFG-- 533

Query: 398 FRNSRFNREETEIFIAATPFL 418
             +     E + + I  TP  
Sbjct: 534 -GSQTGKNERSTLVIIITPTF 553


>gi|330890299|gb|EGH22960.1| general secretion pathway protein D [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 123

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-A 423
           G  +VL GLL+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++    
Sbjct: 1   GQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIRDSGT 60

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            R+++   + Y     A+       N +    +A ++    
Sbjct: 61  GRNITL--NRYEFMRRAQGNLRPERNWMLPDMQAPQLPSAA 99


>gi|322514180|ref|ZP_08067245.1| rough colony protein A [Actinobacillus ureae ATCC 25976]
 gi|322119966|gb|EFX91968.1| rough colony protein A [Actinobacillus ureae ATCC 25976]
          Length = 162

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 3/138 (2%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
               K  ++   +  +++    +  V VS P  AD  +    T  L+ K  G+A ++   
Sbjct: 24  TAVAKTFALEQGQSQLIKTDAKIDTVFVSSPDVADYEILDDNTFMLYTKAEGRAEIVAFD 83

Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            DG  +            +IA     ++    +SN+ ++ +    V+ G  +   +S+  
Sbjct: 84  VDGTPLTEDFVNVNNAINNIAAANAQIQTRFPNSNLSIKKIGKAYVIEGKAKNAAESEEI 143

Query: 161 VELSETFLSQSGRNQYAN 178
             +    L    +   A 
Sbjct: 144 NRIVGESLGAGRKVVEAK 161


>gi|83404883|ref|YP_424898.1| PilN [Escherichia coli]
 gi|299836184|ref|YP_003717753.1| putative lipoprotein [Escherichia coli ETEC 1392/75]
 gi|46949078|gb|AAT07432.1| PilN [Escherichia coli]
 gi|83308609|emb|CAI79602.1| lipoprotein (PilN protein) [Escherichia coli]
 gi|297374533|emb|CBL93616.1| putative lipoprotein [Escherichia coli ETEC 1392/75]
          Length = 560

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 88/261 (33%), Gaps = 26/261 (9%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           +  + ++  N     QV L V +  V     +Q G   ++   S   + +   +  G F 
Sbjct: 297 AVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFT 356

Query: 240 SEGGDF-----SVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                      S  G   +FS    ++ AL     +  +     T  +          Q 
Sbjct: 357 GATSAGVSILDSATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQT 416

Query: 294 LYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---- 341
           +Y   S++T  T V             G  +   P +   G + L++   +S+P      
Sbjct: 417 VYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSF 476

Query: 342 ----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
               G +  +MP  ++R     V L  G ++V+ G  +++    K G       P+ G  
Sbjct: 477 TSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGT-FTPANPLFG-- 533

Query: 398 FRNSRFNREETEIFIAATPFL 418
             +     E + + I  TP  
Sbjct: 534 -GSQTGKNERSTLVIIITPTF 553


>gi|300819642|ref|ZP_07099834.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 107-1]
 gi|300907596|ref|ZP_07125231.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 84-1]
 gi|301306610|ref|ZP_07212671.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 124-1]
 gi|300400664|gb|EFJ84202.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 84-1]
 gi|300527809|gb|EFK48871.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 107-1]
 gi|300838171|gb|EFK65931.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 124-1]
 gi|315252987|gb|EFU32955.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 85-1]
 gi|315295843|gb|EFU55160.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 16-3]
 gi|324020971|gb|EGB90190.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 117-3]
          Length = 552

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 26/258 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           + ++  N     QV L V +  V     +Q G   ++   S   + +   +  G F    
Sbjct: 292 RYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGAT 351

Query: 243 G------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  D +            ++ AL     +  +     T  +          Q +Y 
Sbjct: 352 SAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYV 411

Query: 297 TVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------- 341
             S++T  T V             G  +   P +   G + L++   +S+P         
Sbjct: 412 AQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSK 471

Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            G +  +MP  ++R     V L  G ++V+ G  +++    K G       P+ G    +
Sbjct: 472 DGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGT-FTPANPLFG---GS 527

Query: 401 SRFNREETEIFIAATPFL 418
                E + + I  TP  
Sbjct: 528 QTGKNERSTLVIIITPTF 545


>gi|62959541|gb|AAY23728.1| hydroxylamine oxidase [Acinetobacter sp. YY-5]
          Length = 149

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 7/117 (5%)

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------- 304
            R ++  ++ AL+  T    L+ P++  +  + A    G    + T S +T         
Sbjct: 27  SRKAYGALIQALKANTKSNLLSTPSIVTMDNEEAYIVVGQNVPFVTGSVATQGNSTVNPY 86

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
           T+V   D GV L   P +   G + L ++ EVS                R   T+V 
Sbjct: 87  TTVERKDVGVTLKVVPHIGEGGSVRLEVEQEVSAVQESRGQATDLVTSKRAIKTSVL 143


>gi|167589098|ref|ZP_02381486.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           ubonensis Bu]
          Length = 419

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 79/245 (32%), Gaps = 25/245 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V  +     G   S+   +          F    ++   D S   +  
Sbjct: 172 SRQVLLNVTVLSVSLNAGDAYGIDWSLVYKTMSAGFGVTNPFTPVALTSPADLSATVLSP 231

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V  
Sbjct: 232 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVAKQTGYLASVSTTNTANVGS 291

Query: 308 ------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSY 351
                  T   G  +   P VL  G + L+  T +S              G      P  
Sbjct: 292 STALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKDVTSSEAKGATKIQTPDV 351

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
            +R     + + SG T+V++G    +    + G+      P + AL       R    I 
Sbjct: 352 DMRNFLQRIAMKSGETLVISGYEGTNDSLDERGV----GTPKMIALGGGYEAQRTREVIV 407

Query: 412 IAATP 416
           I  TP
Sbjct: 408 ILITP 412


>gi|301167753|emb|CBW27337.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 459

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 65/400 (16%), Positives = 134/400 (33%), Gaps = 49/400 (12%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT-MYLFGKNVGQANVILIGHDGKQ 108
           I+I + +   +  P ++++  VS+     V     +  + + GK+ G + + +     + 
Sbjct: 60  INIAVGEYYRIPTP-NLENYAVSNKELLSVRHRKAQEGLLIRGKHQGFSTIKVWN-SHQV 117

Query: 109 MLNLDILIERDIAHLEMTLRRF-IADSNIRVEMVSDTVVLHGMVRTIQD----------- 156
                I I+  I   +M L         I  E+ S  + L   +  +             
Sbjct: 118 EKKYHIFIQTKIGLAKMKLLALNFEQMGIDTELSSSKLKLCSTITELNQFKSISSLLKSS 177

Query: 157 -----SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI--------- 202
                    + +S+    +     Y      KV ++  I    Q+ ++  +         
Sbjct: 178 EKSINIDNQLLISKELQRELANLIYPKFLKNKVSDI--ICQFHQMPIRCKVPKSNLDIDS 235

Query: 203 ----------AEVRR--DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
                      E+ +  D L    F+          + S     G   +S      ++  
Sbjct: 236 LVKYWFHEIPIEIHQFQDELTLDNFKLKTKLILLESASSEVLALGLDKISNNLYALIRND 295

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           L+ F  E +++   +   + ++A P +          + G +  +   S     T+    
Sbjct: 296 LNSFIGENIINFENKRVKLSSIATPEIITRVNNEGEISIGSEIPFTRKSKEEYVTN--WK 353

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
             G+ +  T          L I+TE+S P+    A    +    K  + V++  G ++ +
Sbjct: 354 FAGLKIK-TKLEKENNEYFLNIETELSRPMQSSGAS---TISSNKTKSRVKITQGKSLKI 409

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +    IQ     +P LSKIP+LG LF +S        I
Sbjct: 410 TDIGHQGIQHQNTSLPYLSKIPLLGKLFTSSSEIETYKNI 449


>gi|253990257|ref|YP_003041613.1| piln (lipoprotein) [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253781707|emb|CAQ84870.1| piln (lipoprotein) [Photorhabdus asymbiotica]
          Length = 533

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 87/257 (33%), Gaps = 26/257 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K  ++  N     QV L V I  +  D   Q G   S+   S+        +        
Sbjct: 285 KDYIDQQNKLLTTQVVLNVKILNLMFDRADQYGVDWSLAYKSAHIG--VGGEGSSAVDGS 342

Query: 242 GGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           G   ++  +   FS    ++ AL     +  + +P++T ++ Q+       Q  Y    S
Sbjct: 343 GISTNIHILKGPFSDSTLLIKALSAQGKVSIVTQPSVTTLNLQAVPMQVATQTGYVASIS 402

Query: 301 STGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNA 345
           +T    V         T   G  +   P  ++  +I L+    +S+              
Sbjct: 403 NTSTPQVGTSVGIEPATVTTGFNMLMLPYAMADKQILLQYNISLSDLKRLEKFGKEETGQ 462

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS--KIPILGALFRNSRF 403
             +P+  +R     V L SG T+VL+G  +      + G   L       LG    +   
Sbjct: 463 VQLPTVDLRAFSQKVRLHSGETLVLSGFEQQSDASDRSG---LGSPDNQFLG---GSREG 516

Query: 404 NREETEIFIAATPFLVK 420
            R    I +  TP +V 
Sbjct: 517 KRNHNVIVVMITPIVVD 533


>gi|167573379|ref|ZP_02366253.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           oklahomensis C6786]
          Length = 411

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 81/249 (32%), Gaps = 25/249 (10%)

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
           N A   QV L VT+  V        G   S+   +          F    ++   + S  
Sbjct: 160 NRALSRQVLLNVTVLSVSLSAGDAYGIDWSLVYHTLSAKFGIVNAFKPVSLTPTAELSAT 219

Query: 249 GVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            +     F     ++ AL +   +R     ++  ++ Q        Q  Y    S+T   
Sbjct: 220 VLSPTSRFNGTSLLIRALSQQGQVRRKTSASVMTLNNQPVPVQVATQVGYLASVSTTNTA 279

Query: 306 SVTTHDY--------GVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGD----- 347
           +V +           G  +   P VL  G + L+  T +S     + V     G      
Sbjct: 280 NVGSSTALTPGSVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLALKNVASSTGGGAMQIQ 339

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P   +R     V + SG T+V++G    +    + G+      P + AL       R  
Sbjct: 340 TPDIDMRNFLQRVAMKSGETLVISGYEGTNDSLDERGV----GAPKMIALGGGYEAQRAR 395

Query: 408 TEIFIAATP 416
             I I  TP
Sbjct: 396 EVIVILITP 404


>gi|281356728|ref|ZP_06243219.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316855|gb|EFB00878.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 627

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL-PSGGTIV 369
           ++G  L  TP V +     +++    +  ++G      P       +T++++   GG   
Sbjct: 472 EFGFTLELTPEVNTEAS-QIKVAMS-NTNLLGFKGNGEPRTSETVLNTSLQMANDGGVFY 529

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + GL K  + +    +P L  IP LG +F     + ++T+I    T   V P    D   
Sbjct: 530 IGGLEKSALVRSVSKVPFLGDIPFLGWVFAGESESVKKTQIVAVLTVVPVTPDTPVDARL 589

Query: 430 PDD 432
            D+
Sbjct: 590 RDE 592


>gi|218711163|ref|YP_002418783.1| putative type IV pilus outer membrane secretin lipoprotein
           [Escherichia coli ED1a]
 gi|218349946|emb|CAQ87357.1| putative type IV pilus outer membrane secretin lipoprotein
           [Escherichia coli ED1a]
          Length = 539

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 85/263 (32%), Gaps = 19/263 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             N     + +  +   N   + QV L V I  +R+   +Q G   +   S      S  
Sbjct: 281 TDNPQVLETVRAFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLG 340

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           + F G                    +  L AL     +  + + +    +          
Sbjct: 341 STFTGAASDAITGGVSIVDGKLTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIAN 400

Query: 292 QHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEV 336
           Q  Y    ++    +V         T   G  +   P +L           + L  +  +
Sbjct: 401 QQSYIESVTTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVI 460

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                G +   +P+  ++  + TV+L SG T++++G  +   +  K+G+      P    
Sbjct: 461 ENYESGGSKAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFG 516

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           L        ++T + +  TP ++
Sbjct: 517 LGGGINSENDDTILVVLITPNII 539


>gi|330883499|gb|EGH17648.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 98

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             SG T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++  
Sbjct: 10  AKSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI-- 67

Query: 422 VAMRDLSRPDDHYSVE 437
            +     +  D Y  +
Sbjct: 68  TSSSQARQVTDDYRQQ 83


>gi|172064947|ref|YP_001815659.1| type IVB pilus formation outer membrane protein [Burkholderia
           ambifaria MC40-6]
 gi|171997189|gb|ACB68106.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia ambifaria MC40-6]
          Length = 577

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 71/219 (32%), Gaps = 16/219 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--KFVS 240
           + M+  N     QV + VT+  V        G        + G        F    +  S
Sbjct: 327 EFMDQQNRVLARQVLINVTVLSVTLSAADSYGINWHAVYQALGTQFGITTAFTSMIQNPS 386

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           E     +       S   V+ AL     +      ++T ++ Q        Q  Y    S
Sbjct: 387 ELSASVITPSSRASSTTAVIDALSTQGTVHRKTSASITTLNDQPVPVQVAEQQGYLAQIS 446

Query: 301 STGATSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAG 346
           +T   ++         T   G  L   P +L  G I ++  + +S  V            
Sbjct: 447 TTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDGTIMMQFYSNISSLVNLAPFGPANQQI 506

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            +P+   R     + + SG T+V++G      Q  ++G+
Sbjct: 507 QLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQDNRQGV 545


>gi|161617498|ref|YP_001591463.1| hypothetical protein SPAB_05357 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366862|gb|ABX70630.1| hypothetical protein SPAB_05357 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 557

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 85/251 (33%), Gaps = 27/251 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT-------GSSSGPSKSFAADFGGKFVSEGGDF 245
             QV L + I  V +   +Q+G    +        G++   S + A+   G       D 
Sbjct: 311 SRQVQLNIQIVSVNQTRNEQLGLDWGLVYKSLHNFGATLTGSMANASTSAGSAGISILDT 370

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302
           +            ++ AL     +      T    +    ++    Q    T SSST   
Sbjct: 371 ATGNAAKFSGSSLLIKALSEQGNVSMALNQTDPTANLTPVAYQLSNQQGVLTSSSSTATA 430

Query: 303 -----GATSVTTHDYGVVLHFTPTVLSPGRIGLRI--------QTEVSEPVIGVNAGDMP 349
                 + +VTT   G+ +   P +   G + L+         Q E      G    D+P
Sbjct: 431 NVGVTSSQTVTTITTGLFMTMLPFIQENGDVQLQFAFSYTSPPQIEKFISRDGNTRNDIP 490

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   +     V L SG T+VL G  + ++   K+G        ILG         R    
Sbjct: 491 NTSTQGLARKVNLRSGQTLVLTGSEQQNLSANKQGT-FTPDNFILG---GGQNGTRGRNT 546

Query: 410 IFIAATPFLVK 420
           + I  TP L++
Sbjct: 547 LVIMITPVLLR 557


>gi|91791253|ref|YP_552203.1| type II and III secretion system protein [Polaromonas sp. JS666]
 gi|91701134|gb|ABE47305.1| type II and III secretion system protein [Polaromonas sp. JS666]
          Length = 556

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 106/319 (33%), Gaps = 50/319 (15%)

Query: 121 AHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
             LE  +++ ++++  +     + T+ +     T    ++  +                +
Sbjct: 265 TALESGIKQMLSNAGKVSASPATGTITVT---DTPAVMEKVADFV--------------T 307

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           +  + +N L       V++ V +  V        G       ++   +  ++      F 
Sbjct: 308 AQNQALNRL-------VSVNVRVLSVEISEGDDYGINWDAVYANLSAANPYSLALKTAFP 360

Query: 240 SEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           +  G  ++       S         +L AL     +  L   TL  ++ Q A    G + 
Sbjct: 361 TATGAGNLIISAPAGSNSRWAGSSAMLSALSMQGRVSELTSATLVTLNNQPAPVNVGRKV 420

Query: 294 LYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGR------IGLRIQTEVSEP 339
            Y   SS T   +V +           G  +   P ++          + L    +++  
Sbjct: 421 SYLASSSQTQTANVGSTVSLTPGVIQTGFSMTIVPHIIDGNELLLQYSLDLSSLLKLNTI 480

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
             G ++   P          V L SG T+V+AG  +D++  +  G+   ++  +LG    
Sbjct: 481 SSGTSSIQAPDVATSNFIQRVRLKSGETLVVAGFDQDNLTAVANGV-GAAENKLLG---- 535

Query: 400 NSRFNREETEIFIAATPFL 418
           +   + +   + +   P +
Sbjct: 536 SRTGSTKRQILVVLIQPNI 554


>gi|167566274|ref|ZP_02359190.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           oklahomensis EO147]
          Length = 409

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 79/245 (32%), Gaps = 25/245 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   S+   +          F    ++   + S   +  
Sbjct: 162 SRQVLLNVTVLSVSLSAGDAYGIDWSLVYHTLSAKFGIVNAFKPVSLTPTAELSATVLSP 221

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++  ++ Q        Q  Y    S+T   +V +
Sbjct: 222 TSRFNGTSLLIRALSQQGQVRRKTSASVMTLNNQPVPVQVATQVGYLASVSTTNTANVGS 281

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGD-----MPSY 351
                      G  +   P VL  G + L+  T +S     + V     G       P  
Sbjct: 282 STALTPGSVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLALKNVASSTGGGAMQIQTPDI 341

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
            +R     V + SG T+V++G    +    + G+      P + AL       R    I 
Sbjct: 342 DMRNFLQRVAMKSGETLVISGYEGTNDSLDERGV----GAPKMIALGGGYEAQRAREVIV 397

Query: 412 IAATP 416
           I  TP
Sbjct: 398 ILITP 402


>gi|50119484|ref|YP_048651.1| putative type IV pilus protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610010|emb|CAG73449.1| putative Type IV pilus protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 554

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 88/255 (34%), Gaps = 23/255 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239
           +  ++ LN+     V L V++  V+R    Q     S+ G          A        V
Sbjct: 306 ESYIDSLNVRMNRMVKLMVSVYSVQRKGSSQTSLDWSVVGKRLDRFGLTLAGTPTATTAV 365

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S  G   V G     +   +  ALE    +  +     T  +   A F   GQ +Y    
Sbjct: 366 SSAGINVVDGKFAGTT--ALFRALETQGKVSVVMAHEATTTNLVPAPFQIAGQMVYLRSQ 423

Query: 300 SSTGATSVTTHD-------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVN 344
            ++ + +  T D        G  +   P +   G I L+     S+P          G  
Sbjct: 424 KTSVSENYATTDMEPGSITTGTQMTLLPDIRDEGDIQLQFNFSHSDPAQLRKESSKDGNT 483

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
             +MP   VR     V L  G T++++G    ++   +EG      + + G         
Sbjct: 484 KMEMPYTTVRSLSERVNLKPGQTLIVSGYNSRNLTASREGA-FDPDVTVAG---GGKSSE 539

Query: 405 REETEIFIAATPFLV 419
            ++  + IA TP L+
Sbjct: 540 TDDVTLIIAVTPVLM 554


>gi|191166277|ref|ZP_03028110.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli B7A]
 gi|317054603|ref|YP_004119670.1| PilN [Escherichia coli]
 gi|51038809|gb|AAT94189.1| PilN [Escherichia coli]
 gi|190903704|gb|EDV63420.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli B7A]
 gi|284433134|gb|ADB84873.1| PilN [Escherichia coli]
 gi|323974480|gb|EGB69607.1| R64 PilN family protein type IVB pilus formation outer membrane
           protein [Escherichia coli TW10509]
          Length = 539

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 23/255 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239
           +  +   N   + QV L V I  +R+   +Q G   +   S      S  + F       
Sbjct: 291 RTFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDT 350

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             GG   V G L     +  L AL     +  +   +    +          Q  Y    
Sbjct: 351 VTGGVSIVNGKLTGS--KAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESV 408

Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVN 344
           ++    +V         T   G  +   P +L           + L  +  +     G +
Sbjct: 409 TTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGS 468

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+  ++  + TV+L SG T++++G  +   +  K+G+      P    L       
Sbjct: 469 KAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSE 524

Query: 405 REETEIFIAATPFLV 419
            ++T + +  TP ++
Sbjct: 525 NDDTILVVLITPNII 539


>gi|305667882|ref|YP_003864356.1| type IV pilus formation outer membrane protein [Escherichia coli]
 gi|304655631|emb|CBM42300.1| type IV pilus formation outer membrane protein [Escherichia coli]
 gi|333011616|gb|EGK31029.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Shigella flexneri K-227]
 gi|333011730|gb|EGK31139.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Shigella flexneri K-227]
          Length = 539

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 23/255 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239
           +  +   N   + QV L V I  +R+   +Q G   +   S      S  + F       
Sbjct: 291 RTFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDT 350

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             GG   V G L     +  L AL     +  +   +    +          Q  Y    
Sbjct: 351 VTGGVSIVNGKLTGS--KAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESV 408

Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVN 344
           ++    +V         T   G  +   P +L           + L  +  +     G +
Sbjct: 409 TTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGS 468

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+  ++  + TV+L SG T++++G  +   +  K+G+      P    L       
Sbjct: 469 KAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSE 524

Query: 405 REETEIFIAATPFLV 419
            ++T + +  TP ++
Sbjct: 525 NDDTILVVLITPNII 539


>gi|167840260|ref|ZP_02466944.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           thailandensis MSMB43]
          Length = 423

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 80/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   S+   +     +    F    ++   D S   +  
Sbjct: 175 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTNPADLSATVLSP 234

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V  
Sbjct: 235 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 294

Query: 308 ------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-----------IGVNAGDMPS 350
                  T   G  +   P VL  G + L+  T +S  +            G      P 
Sbjct: 295 STALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVSSSTGGSGAARIQTPD 354

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 355 VDMRNFLQRVAMKSGETLVISGYEGTNDSLDERGV----GTPKMIALGGGYEAQRAREVI 410

Query: 411 FIAATP 416
            I  TP
Sbjct: 411 VILITP 416


>gi|300993702|ref|ZP_07180511.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 200-1]
 gi|300305068|gb|EFJ59588.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 200-1]
          Length = 539

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 23/255 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239
           +  +   N   + QV L V I  +R+   +Q G   +   S      S  + F       
Sbjct: 291 RTFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDT 350

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             GG   V G L     +  L AL     +  +   +    +          Q  Y    
Sbjct: 351 VTGGVSIVNGKLTGS--KAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESV 408

Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVN 344
           ++    +V         T   G  +   P +L           + L  +  +     G +
Sbjct: 409 TTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGS 468

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+  ++  + TV+L SG T++++G  +   +  K+G+      P    L       
Sbjct: 469 KAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSE 524

Query: 405 REETEIFIAATPFLV 419
            ++T + +  TP ++
Sbjct: 525 NDDTILVVLITPNII 539


>gi|168770541|ref|ZP_02795548.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli O157:H7 str. EC4486]
 gi|226201055|ref|YP_002756667.1| type IVB pilus formation outer membrane protein [Escherichia coli]
 gi|309783663|ref|ZP_07678313.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Shigella dysenteriae 1617]
 gi|189360515|gb|EDU78934.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli O157:H7 str. EC4486]
 gi|219881684|gb|ACL52054.1| type IVB pilus formation outer membrane protein [Escherichia coli]
 gi|308928559|gb|EFP74016.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Shigella dysenteriae 1617]
 gi|324010812|gb|EGB80031.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 60-1]
          Length = 539

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 23/255 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239
           +  +   N   + QV L V I  +R+   +Q G   +   S      S  + F       
Sbjct: 291 RTFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDT 350

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             GG   V G L     +  L AL     +  +   +    +          Q  Y    
Sbjct: 351 VTGGVSIVNGKLTGS--KAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESV 408

Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVN 344
           ++    +V         T   G  +   P +L           + L  +  +     G +
Sbjct: 409 TTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGS 468

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+  ++  + TV+L SG T++++G  +   +  K+G+      P    L       
Sbjct: 469 KAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSE 524

Query: 405 REETEIFIAATPFLV 419
            ++T + +  TP ++
Sbjct: 525 NDDTILVVLITPNII 539


>gi|90411855|ref|ZP_01219863.1| putative type II protein secretion system D protein [Photobacterium
           profundum 3TCK]
 gi|90327113|gb|EAS43485.1| putative type II protein secretion system D protein [Photobacterium
           profundum 3TCK]
          Length = 438

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 121/373 (32%), Gaps = 62/373 (16%)

Query: 75  TKADVVVHSPRTMYLFGKNVG-----------QANVILIGHDG----KQMLNLDILIERD 119
           T  D  + + + + +  K  G             N+     +      ++ N  I + +D
Sbjct: 93  TIVDSKIDTKQRV-IINKYDGDLKSLISAVSENTNLTFEQKNEILYITELKNYKIKVVQD 151

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                   +  I    + +E + D +      + +  S  A     +F S     +   S
Sbjct: 152 --------KEIIDAVKLELEKLEDEI------KELVVSDTA--GVFSFKSDYKTFKKIES 195

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
             K + N  ++     + + +++  V        GF        +    S   + G    
Sbjct: 196 IIKDINNNTSL-----INIDLSLINVEIKESDGNGFDWKTLNILANLDGSEMLNNGFSLT 250

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S G    + G    F+F  V++AL        +   ++  +SG+ A   +  +  Y    
Sbjct: 251 S-GNRLGITG--KNFNFSLVMNALNEYGQTEAIQNTSIKTLSGKEAVLKTTERTPYIDKI 307

Query: 300 SSTGATSVTTH-------DYGVVLHFTPTVLSPGRI-GLRIQTEVSEPVIGVNAG----- 346
                   T         + G+ L   P      ++  +++  + S     +N       
Sbjct: 308 EIMNNGEFTEKGFTTSETETGLELKILPYFDKDSKMLNIKVDLKNSSLKGFLNVSNDDFE 367

Query: 347 -DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            + P+   ++ ++ V + +G T V+ GL+     +    I           + ++++   
Sbjct: 368 LNQPNTEEQEFNSVVRIRAGETSVIGGLIYYKQNKSGNNI--------FNEITQSNKKEF 419

Query: 406 EETEIFIAATPFL 418
            +  +FI   P +
Sbjct: 420 SKNALFILIRPTV 432


>gi|73853185|ref|YP_308681.1| pillus assembly protein [Escherichia coli]
 gi|33414103|gb|AAL18829.2| Pillus assembly protein [Escherichia coli]
          Length = 539

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 84/263 (31%), Gaps = 19/263 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             N     + +  +   N   + QV L V I  +R+   +Q G   +   S      S  
Sbjct: 281 TDNPQVLETVRAFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLG 340

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           + F                      +  L AL     +  + + +    +          
Sbjct: 341 STFTSAASDAITGGVSIVDGKLTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIAN 400

Query: 292 QHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEV 336
           Q  Y    ++    +V         T   G  +   P +L           + L  +  +
Sbjct: 401 QQSYIESVTTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVI 460

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                G +   +P+  ++  + TV+L SG T++++G  +   +  K+G+      P    
Sbjct: 461 ENYESGGSKAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFG 516

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           L        ++T + +  TP ++
Sbjct: 517 LGGGINSENDDTILVVLITPNII 539


>gi|331680850|ref|ZP_08381490.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli H299]
 gi|331081838|gb|EGI52996.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli H299]
          Length = 539

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 84/263 (31%), Gaps = 19/263 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             N     + +  +   N   + QV L V I  +R+   +Q G   +   S      S  
Sbjct: 281 TDNPQVLETVRAFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLG 340

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           + F                      +  L AL     +  + + +    +          
Sbjct: 341 STFTSAASDAITGGVSIVDGKLTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIAN 400

Query: 292 QHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEV 336
           Q  Y    ++    +V         T   G  +   P +L           + L  +  +
Sbjct: 401 QQSYIESVTTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVI 460

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                G +   +P+  ++  + TV+L SG T++++G  +   +  K+G+      P    
Sbjct: 461 ENYESGGSKAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFG 516

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           L        ++T + +  TP ++
Sbjct: 517 LGGGINSENDDTILVVLITPNII 539


>gi|257142072|ref|ZP_05590334.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           thailandensis E264]
          Length = 586

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/318 (18%), Positives = 105/318 (33%), Gaps = 49/318 (15%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             L+  ++  ++     V   +   +      ++ D+   +E    F++Q  R+      
Sbjct: 289 NGLQSAIQSMLSRYGSSVSSPATGSI------SVTDTPDVLERVAAFMTQQNRSL----- 337

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
                         QV L VT+  V        G   S+   +     +    F    ++
Sbjct: 338 ------------SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLT 385

Query: 241 EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           +  D S   +     F     ++ AL +   +R     ++T ++ Q        Q  Y  
Sbjct: 386 KPADLSATVLSPTSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLA 445

Query: 298 VSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQT---------EVSEPV 340
             S+T   +V +           G  +   P VL  G + L+  T         EVS   
Sbjct: 446 SVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSST 505

Query: 341 IGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            G +A  +  P   +R     V + SG T+V++G    +    + G+      P + AL 
Sbjct: 506 GGRSAARIQTPDVDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALG 561

Query: 399 RNSRFNREETEIFIAATP 416
                 R    I I  TP
Sbjct: 562 GGYEAQRAREVIVILITP 579


>gi|170698379|ref|ZP_02889453.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia ambifaria IOP40-10]
 gi|170136718|gb|EDT04972.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia ambifaria IOP40-10]
          Length = 577

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 70/219 (31%), Gaps = 16/219 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--KFVS 240
           + M   N     QV + VT+  V        G        + G        F    +  S
Sbjct: 327 EFMEQQNRVLARQVLINVTVLSVTLSAADSYGINWHAVYQALGTQFGITTAFTSMIQNPS 386

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           E     +       S   V+ AL     +      ++T ++ Q        Q  Y    S
Sbjct: 387 ELSASVITPSSRASSTTAVIDALSTQGTVHRKTSASITTLNDQPVPVQVAEQQGYLAQIS 446

Query: 301 STGATSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAG 346
           +T   ++         T   G  L   P +L  G I ++  + +S  V            
Sbjct: 447 TTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDGTIMMQFYSNISSLVNLVPFGPANQQI 506

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            +P+   R     + + SG T+V++G      Q  ++G+
Sbjct: 507 QLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQDNRQGV 545


>gi|297520545|ref|ZP_06938931.1| general secretion pathway protein D precursor [Escherichia coli
           OP50]
          Length = 111

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +   P +++     D
Sbjct: 1   LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAAD 57


>gi|254262815|ref|ZP_04953680.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 1710a]
 gi|254213817|gb|EET03202.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 1710a]
          Length = 589

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 341 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 400

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 401 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 460

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350
                      G  +   P VL  G + L+  T +S       V     G        P 
Sbjct: 461 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 520

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 521 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 576

Query: 411 FIAATP 416
            I  TP
Sbjct: 577 VILITP 582


>gi|126668015|ref|ZP_01738979.1| hypothetical protein MELB17_09748 [Marinobacter sp. ELB17]
 gi|126627525|gb|EAZ98158.1| hypothetical protein MELB17_09748 [Marinobacter sp. ELB17]
          Length = 498

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 20/249 (8%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +  +N     QV L++  A V  +         +   ++      F        VS   +
Sbjct: 250 IEDINDVYGRQVHLQIRTASVTVENANDFNLTWNNILNTVNNGD-FDVGLNSAAVSTAAN 308

Query: 245 FSVKGVL-DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            ++  V+         L  L + T    + E ++T +S Q AS     +  Y +  S   
Sbjct: 309 PNILNVIRTSTGASLALEMLAQETESTEINEQSVTTLSNQPASLKVLSETGYISGISQQE 368

Query: 304 AT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYR 352
            +           VTT   G      P V+S   + L++  E+S  +  +N    +    
Sbjct: 369 TSGDLNNVISDVEVTTITTGFDATLVPRVVSDSVLQLQVALELSNNLQLINFDSTIVQTP 428

Query: 353 VRKADTTVE---LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
            R  +T V+   L +G T +LA    +       G          G L   +  +  +  
Sbjct: 429 TRNRNTVVQRAWLRNGETWILAAFNSEKTTNKISGT---GSAGFWG-LGGGTSKSNNQQV 484

Query: 410 IFIAATPFL 418
           + I  TP +
Sbjct: 485 LLIMITPHI 493


>gi|226198442|ref|ZP_03794010.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei Pakistan 9]
 gi|225929499|gb|EEH25518.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 590

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 342 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 401

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 402 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 461

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350
                      G  +   P VL  G + L+  T +S       V     G        P 
Sbjct: 462 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 521

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 522 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 577

Query: 411 FIAATP 416
            I  TP
Sbjct: 578 VILITP 583


>gi|70732014|ref|YP_261759.1| type IV pilus protein, PilN [Pseudomonas fluorescens Pf-5]
 gi|68346313|gb|AAY93919.1| type IV pilus protein, PilN [Pseudomonas fluorescens Pf-5]
          Length = 613

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 80/271 (29%), Gaps = 30/271 (11%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLL-------NIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +              S   +V+N +       N     QV   V I EV      Q    
Sbjct: 296 AGRIFLSRSTGTLTVSDRPEVLNRIASYLQSTNRNITRQVLFNVKIFEVNFTDRDQTAVN 355

Query: 217 H-----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                 S++G       +  A      +S                  V+ AL     I  
Sbjct: 356 WKAVYKSVSGRWGLSLANKVAGISTDAISGSVSILDTSSSPWAGSSAVIQALSEQGRISD 415

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTVL 323
           +  P++T ++ Q A    G    Y   SS+T           +  T   G  +   P ++
Sbjct: 416 VRSPSITTLNLQPAPIQIGNVKSYVASSSTTTTASVGSSTSLTPATITSGFNMMLLPKII 475

Query: 324 SPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
               + L I   +S            ++     +  + A   V L SG T+VL G  ++ 
Sbjct: 476 DRDNMLLMISISMSSKPTFTTFTSNGSSVQTADFDTKNAAPKVLLRSGQTLVLTGFEENT 535

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREET 408
               K G+         G L  +   + + +
Sbjct: 536 ENADKTGV---GDASFFG-LGGSRTRSSDHS 562


>gi|115360623|ref|YP_777760.1| type IVB pilus formation outer membrane protein [Burkholderia
           ambifaria AMMD]
 gi|115285951|gb|ABI91426.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia ambifaria AMMD]
          Length = 577

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 70/219 (31%), Gaps = 16/219 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--KFVS 240
           + M   N     QV + VT+  V        G        + G        F    +  S
Sbjct: 327 EFMEQQNRVLARQVLINVTVLSVTLSAADSYGINWHAVYQALGTQFGITTAFTSMIQNPS 386

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           E     +       S   V+ AL     +      ++T ++ Q        Q  Y    S
Sbjct: 387 ELSASVITPSSRASSTTAVIDALSTQGTVHRKTSASITTLNDQPVPVQVAEQQGYLAQIS 446

Query: 301 STGATSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAG 346
           +T   ++         T   G  L   P +L  G I ++  + +S  V            
Sbjct: 447 TTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDGTIMMQFYSNISSLVNLVPFGPANQQI 506

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            +P+   R     + + SG T+V++G      Q  ++G+
Sbjct: 507 QLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQDNRQGV 545


>gi|53722623|ref|YP_111608.1| type IV pilus biosynthesis protein [Burkholderia pseudomallei
           K96243]
 gi|52213037|emb|CAH39075.1| putative type IV pilus biosynthesis protein [Burkholderia
           pseudomallei K96243]
          Length = 589

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 341 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 400

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 401 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 460

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350
                      G  +   P VL  G + L+  T +S       V     G        P 
Sbjct: 461 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 520

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 521 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 576

Query: 411 FIAATP 416
            I  TP
Sbjct: 577 VILITP 582


>gi|53716205|ref|YP_106188.1| putative type IV pilus biogenesis protein PilN [Burkholderia mallei
           ATCC 23344]
 gi|124381791|ref|YP_001025775.1| type IVB pilus formation outer membrane protein [Burkholderia
           mallei NCTC 10229]
 gi|126447055|ref|YP_001077859.1| type IVB pilus formation outer membrane protein [Burkholderia
           mallei NCTC 10247]
 gi|126457943|ref|YP_001076206.1| type IVB pilus formation outer membrane protein [Burkholderia
           pseudomallei 1106a]
 gi|167003979|ref|ZP_02269757.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei PRL-20]
 gi|237509279|ref|ZP_04521994.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei MSHR346]
 gi|242311526|ref|ZP_04810543.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 1106b]
 gi|254205031|ref|ZP_04911384.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei JHU]
 gi|254359153|ref|ZP_04975425.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei 2002721280]
 gi|52422175|gb|AAU45745.1| putative type IV pilus biogenesis protein PilN [Burkholderia mallei
           ATCC 23344]
 gi|126231711|gb|ABN95124.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 1106a]
 gi|126239909|gb|ABO03021.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei NCTC 10247]
 gi|147754617|gb|EDK61681.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei JHU]
 gi|148028340|gb|EDK86300.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei 2002721280]
 gi|235001484|gb|EEP50908.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei MSHR346]
 gi|242134765|gb|EES21168.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 1106b]
 gi|243060570|gb|EES42756.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei PRL-20]
 gi|261826504|gb|ABM99280.2| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei NCTC 10229]
          Length = 590

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 342 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 401

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 402 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 461

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350
                      G  +   P VL  G + L+  T +S       V     G        P 
Sbjct: 462 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 521

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 522 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 577

Query: 411 FIAATP 416
            I  TP
Sbjct: 578 VILITP 583


>gi|134282150|ref|ZP_01768856.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 305]
 gi|134246679|gb|EBA46767.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 305]
          Length = 589

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 341 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 400

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 401 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 460

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350
                      G  +   P VL  G + L+  T +S       V     G        P 
Sbjct: 461 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 520

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 521 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 576

Query: 411 FIAATP 416
            I  TP
Sbjct: 577 VILITP 582


>gi|254194313|ref|ZP_04900745.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei S13]
 gi|254301386|ref|ZP_04968830.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 406e]
 gi|157811498|gb|EDO88668.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 406e]
 gi|169651064|gb|EDS83757.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei S13]
          Length = 590

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 342 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 401

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 402 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 461

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350
                      G  +   P VL  G + L+  T +S       V     G        P 
Sbjct: 462 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 521

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 522 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 577

Query: 411 FIAATP 416
            I  TP
Sbjct: 578 VILITP 583


>gi|254186932|ref|ZP_04893448.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157934616|gb|EDO90286.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 590

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 342 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 401

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 402 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 461

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350
                      G  +   P VL  G + L+  T +S       V     G        P 
Sbjct: 462 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 521

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 522 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 577

Query: 411 FIAATP 416
            I  TP
Sbjct: 578 VILITP 583


>gi|126443441|ref|YP_001063251.1| type IVB pilus formation outer membrane protein [Burkholderia
           pseudomallei 668]
 gi|126222932|gb|ABN86437.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 668]
          Length = 590

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 342 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 401

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 402 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 461

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350
                      G  +   P VL  G + L+  T +S       V     G        P 
Sbjct: 462 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 521

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 522 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 577

Query: 411 FIAATP 416
            I  TP
Sbjct: 578 VILITP 583


>gi|294784349|ref|ZP_06749640.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27]
 gi|294487921|gb|EFG35276.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27]
          Length = 127

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------------RKADTTVELPSGGTI 368
            +     I L I  E+S+     N  ++                 R   T V + +G TI
Sbjct: 16  VIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKVRVKNGDTI 75

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +L GL K   Q ++  IP+L  IPI+   F+N+    E ++++I     +
Sbjct: 76  LLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYIKLKVEI 125


>gi|218534703|ref|YP_002424465.1| PilN protein [Yersinia pseudotuberculosis]
 gi|218473172|emb|CAQ76600.1| PilN protein [Yersinia pseudotuberculosis]
          Length = 543

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 94/256 (36%), Gaps = 19/256 (7%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           +    +N  N     QV L V +  V +    Q+G   +   +S     S  + F     
Sbjct: 292 AVNTYINDRNTELNRQVVLNVKVYSVEKRRQDQLGIDWNAVFTSGSIGGSLTSAFTEAST 351

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S              + +  ++AL     +  + +   T  +  +     G Q  Y +  
Sbjct: 352 SAMTGGLSILDGKFANSKAFVNALAEQANVSLVTQQASTTTNMSAVPVQVGTQQDYASQV 411

Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEP------VIGVN 344
           ++    +V        +T   G  +   P ++    +I L+    +S+         G +
Sbjct: 412 NTDSTANVGTSTSITKSTITTGFNMTMLPYIMPKSSQIQLQFSINMSDDPTSRTFTSGES 471

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           + ++   R++  +  V L SG T+VL+G  + +    K+G+         G L   +   
Sbjct: 472 SIELMKTRLKTFNQRVILSSGQTLVLSGFQQVNNTGSKQGV---GSASFFG-LGGGANGQ 527

Query: 405 REETEIFIAATPFLVK 420
           +++T + I  TP L++
Sbjct: 528 KDDTMLVILITPTLLR 543


>gi|300940175|ref|ZP_07154781.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 21-1]
 gi|300455011|gb|EFK18504.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 21-1]
          Length = 410

 Score = 81.2 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 23/255 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239
           +  +   N   + QV L V I  +R+   +Q G   +   S      S  + F       
Sbjct: 162 RTFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDT 221

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             GG   V G L     +  L AL     +  +   +    +          Q  Y    
Sbjct: 222 VTGGVSIVNGKLTGS--KAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESV 279

Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVN 344
           ++    +V         T   G  +   P +L           + L  +  +     G +
Sbjct: 280 TTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGS 339

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+  ++  + TV+L SG T++++G  +   +  K+G+      P    L       
Sbjct: 340 KAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSE 395

Query: 405 REETEIFIAATPFLV 419
            ++T + +  TP ++
Sbjct: 396 NDDTILVVLITPNII 410


>gi|254253693|ref|ZP_04947010.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
 gi|124898338|gb|EAY70181.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
          Length = 578

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 69/219 (31%), Gaps = 16/219 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--KFVS 240
           + M   N     QV + VT+  V        G        + G        F    +  S
Sbjct: 328 EFMEQQNRVLARQVLINVTVLSVTLSAQDSYGINWHAVYQALGTQFGITTAFTSMIQNPS 387

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           E     +       S   ++ AL     +      ++T ++ Q        Q  Y    S
Sbjct: 388 ELSATVITPSSRASSTTAIIDALSTQGTVHRKTSASITTLNDQPVPVQVAEQQGYLAQIS 447

Query: 301 STGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAG 346
           +T   ++         T   G  L   P +L  G I ++  + +S  V            
Sbjct: 448 TTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDGTIMMQFYSNISSLVNLVPFGPANQQI 507

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            +P+   R     + + SG T+V++G         ++G+
Sbjct: 508 QLPTVDTRNFLQRIAVKSGQTLVISGYEGITDLDNRQGV 546


>gi|301030047|ref|ZP_07193001.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 196-1]
 gi|299877181|gb|EFI85392.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 196-1]
          Length = 403

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 23/255 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239
           +  +   N   + QV L V I  +R+   +Q G   +   S      S  + F       
Sbjct: 155 RTFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDT 214

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             GG   V G L     +  L AL     +  +   +    +          Q  Y    
Sbjct: 215 VTGGVSIVNGKLTGS--KAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESV 272

Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVN 344
           ++    +V         T   G  +   P +L           + L  +  +     G +
Sbjct: 273 TTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGS 332

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+  ++  + TV+L SG T++++G  +   +  K+G+      P    L       
Sbjct: 333 KAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSE 388

Query: 405 REETEIFIAATPFLV 419
            ++T + +  TP ++
Sbjct: 389 NDDTILVVLITPNII 403


>gi|189424031|ref|YP_001951208.1| type II secretory pathway component PulD-like protein [Geobacter
           lovleyi SZ]
 gi|189420290|gb|ACD94688.1| Type II secretory pathway component PulD-like protein [Geobacter
           lovleyi SZ]
          Length = 510

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 27/214 (12%)

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            +  F    G  F + G +  ++    RFS   +   +E       +    +  +SG+  
Sbjct: 300 ATNLFEQGIGALFNTSGANLFMES--SRFSLSALFSFMENFGKYNVMQNVFVETMSGKKG 357

Query: 286 SFTSGGQHLYKT----------VSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRI 332
                 +  Y +            ++      +T   GV++ FTP      +   I L++
Sbjct: 358 KIEIVTESPYVSEIGISSLSSTSGATAATAKTSTAKAGVIMDFTPYYNKKQQMLTINLKV 417

Query: 333 QTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
             E     + ++AG        P    +  +T + +      ++ GL+ +       G+P
Sbjct: 418 NVEGVNRYVTISAGSQLGSFMQPETTKKSVETFLRMKPEQVAIIGGLVYEMNDDNVNGLP 477

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                     L +N    +E+ E+ I   P +++
Sbjct: 478 --GDT----YLTKNVTGKKEKEELVIVVKPTIIE 505


>gi|67639316|ref|ZP_00438187.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei GB8 horse 4]
 gi|238519853|gb|EEP83319.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei GB8 horse 4]
          Length = 441

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 193 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 252

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 253 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 312

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350
                      G  +   P VL  G + L+  T +S       V     G        P 
Sbjct: 313 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 372

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 373 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 428

Query: 411 FIAATP 416
            I  TP
Sbjct: 429 VILITP 434


>gi|281356848|ref|ZP_06243338.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316406|gb|EFB00430.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 574

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 79/287 (27%), Gaps = 67/287 (23%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---------KSFAADFGGKFVSEGGD 244
            QV L + + EV  +   ++G       ++ G            ++AA + G      G 
Sbjct: 266 PQVRLNIKVYEVYSENNDKMGIDFQSWKNNEGADFFSVGGRYRNNWAAAYSGGMARSFGS 325

Query: 245 FSVKGVLDRFSFETV-LHALERATAIRTLAEPTLTAISGQSASFT--------------- 288
                      + T  L  L      + +    L   +  SA  +               
Sbjct: 326 ERTSFYNFNPKWNTRYLDFLASKGRAKVVHTGELCVRNNTSAQLSRTTQIFYIDTSKPVN 385

Query: 289 -----------SGGQHLYKTV----------------------------SSSTGATSVTT 309
                      SG       V                            S   G   +TT
Sbjct: 386 NAIIPGTTLDPSGNPFPDTGVGPYELLSGLAGKLFDKSIDKPGKDSADLSYGKGNQQITT 445

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTT-VELPSG-G 366
              G     T    S      R    ++    IG  +   P      A T  V LP G  
Sbjct: 446 AFTGFGFTMTVNNASVNLEETRFNVTLNNTSLIGFASNGTPRISKGNAVTQDVSLPHGKD 505

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           + V+ GL K +  + + G+P L  IP LG LF     +    E+ + 
Sbjct: 506 SFVIGGLRKQETVKSRTGVPWLMDIPYLGYLFSTESNSVRHAELIVV 552


>gi|261819950|ref|YP_003258056.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Pectobacterium wasabiae WPP163]
 gi|261603963|gb|ACX86449.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Pectobacterium wasabiae WPP163]
          Length = 554

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 87/255 (34%), Gaps = 23/255 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239
           +  ++ LN+     V L V++  V+R    Q     S+            A        +
Sbjct: 306 EGYIDNLNVRMNRMVKLMVSVYSVQRKGSSQTSLDWSVVAKRLDRFGLTLAGTPTATTSI 365

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S  G   + G     +   +  ALE    +  +     T  +   A F   GQ +Y    
Sbjct: 366 SSAGINVIDGKFAGTT--ALFRALETQGKVSVVMAHEATTTNLVPAPFQIAGQMVYLRNQ 423

Query: 300 SSTGATSVTTHD-------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVN 344
            +T + +  T D        G  +   P +   G I L+     S+P          G  
Sbjct: 424 KTTVSENYATTDMEPGSITTGTQMTLLPDIRDEGDIQLQFNFSHSDPAQLRKESSEDGRT 483

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
             +MP   VR     V L  G T++++G    ++   +EG      + + G         
Sbjct: 484 KMEMPYTTVRSLSERVNLRPGQTLIVSGYNSRNLTTSREGA-FDPDVTVAG---GGKSSE 539

Query: 405 REETEIFIAATPFLV 419
            ++  + IA TP L+
Sbjct: 540 TDDVTLIIAVTPVLM 554


>gi|167743301|ref|ZP_02416075.1| hypothetical protein Bpse14_34822 [Burkholderia pseudomallei 14]
          Length = 403

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 155 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 214

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 215 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 274

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 275 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 334

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 335 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 390

Query: 411 FIAATP 416
            I  TP
Sbjct: 391 VILITP 396


>gi|167615506|ref|ZP_02384141.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           thailandensis Bt4]
          Length = 417

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   S+   +     +    F    +++  D S   +  
Sbjct: 169 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTKPADLSATVLSP 228

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 229 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 288

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQT---------EVSEPVIGVNAGDM--PS 350
                      G  +   P VL  G + L+  T         EVS    G +A  +  P 
Sbjct: 289 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSSTGGRSAARIQTPD 348

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 349 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 404

Query: 411 FIAATP 416
            I  TP
Sbjct: 405 VILITP 410


>gi|300310142|ref|YP_003774234.1| type IVB pilus formation outer membrane protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072927|gb|ADJ62326.1| type IVB pilus formation outer membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 602

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 39/264 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----GSSSGPSKSFAADFGGKF 238
             ++  N +   Q+ + VT+  V      Q G   +       S+ G + ++        
Sbjct: 341 TYIDGENKSLSRQIAINVTVLSVTLSDDDQYGINWNAVYRSLNSTFGIANAYEGALSTGL 400

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
           VS        G       + V+ AL +   +R     ++  ++ Q        Q  Y   
Sbjct: 401 VSFTAGIPSSGTSGFSGSQAVIQALSQQGKVRRQTTASVVTLNNQPVPVQVARQTTYLQS 460

Query: 296 -------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342
                  +  ++++    V T   G  +   P +L+ G + L+  T++S      +    
Sbjct: 461 LQSSLVAQVGTTTSLTPGVVT--AGFNMSILPHMLTNGTVMLQFSTDISTLRRIRQITAS 518

Query: 343 VNAGD-------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP--- 392
            ++          P    R     V + S  T++++G  + D    + G+      P   
Sbjct: 519 TDSSGRATALIESPELDTRNFLQRVAMKSNETLIISGFEQTDENLGRSGV---GD-PKNL 574

Query: 393 ILGALFRNSRFNREETEIFIAATP 416
           +LG           +  I +  TP
Sbjct: 575 LLG---GGVSAATNKEVIVVLITP 595


>gi|167820480|ref|ZP_02452160.1| hypothetical protein Bpse9_35477 [Burkholderia pseudomallei 91]
          Length = 411

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 163 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 222

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 223 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 282

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 283 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 342

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 343 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 398

Query: 411 FIAATP 416
            I  TP
Sbjct: 399 VILITP 404


>gi|167898912|ref|ZP_02486313.1| hypothetical protein Bpse7_34586 [Burkholderia pseudomallei 7894]
          Length = 417

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 169 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 228

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 229 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 288

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 289 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 348

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 349 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 404

Query: 411 FIAATP 416
            I  TP
Sbjct: 405 VILITP 410


>gi|167577356|ref|ZP_02370230.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           thailandensis TXDOH]
          Length = 425

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   S+   +     +    F    +++  D S   +  
Sbjct: 177 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTKPADLSATVLSP 236

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 237 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 296

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQT---------EVSEPVIGVNAGDM--PS 350
                      G  +   P VL  G + L+  T         EVS    G +A  +  P 
Sbjct: 297 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSSTGGRSAARIQTPD 356

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 357 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 412

Query: 411 FIAATP 416
            I  TP
Sbjct: 413 VILITP 418


>gi|167907237|ref|ZP_02494442.1| hypothetical protein BpseN_33715 [Burkholderia pseudomallei NCTC
           13177]
          Length = 419

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 171 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 230

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 231 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 290

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 291 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 350

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 351 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 406

Query: 411 FIAATP 416
            I  TP
Sbjct: 407 VILITP 412


>gi|167923443|ref|ZP_02510534.1| hypothetical protein BpseBC_33112 [Burkholderia pseudomallei
           BCC215]
          Length = 413

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 165 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 224

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 225 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 284

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 285 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 344

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 345 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 400

Query: 411 FIAATP 416
            I  TP
Sbjct: 401 VILITP 406


>gi|167724338|ref|ZP_02407574.1| hypothetical protein BpseD_35290 [Burkholderia pseudomallei DM98]
 gi|167850311|ref|ZP_02475819.1| hypothetical protein BpseB_34040 [Burkholderia pseudomallei B7210]
          Length = 414

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 166 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 225

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 226 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 285

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 286 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 345

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 346 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 401

Query: 411 FIAATP 416
            I  TP
Sbjct: 402 VILITP 407


>gi|167915601|ref|ZP_02502692.1| hypothetical protein Bpse112_34291 [Burkholderia pseudomallei 112]
          Length = 433

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 185 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 244

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 245 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 304

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 305 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 364

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 365 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 420

Query: 411 FIAATP 416
            I  TP
Sbjct: 421 VILITP 426


>gi|167828852|ref|ZP_02460323.1| hypothetical protein Bpseu9_34514 [Burkholderia pseudomallei 9]
          Length = 415

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 167 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 226

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 227 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 286

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 287 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 346

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 347 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 402

Query: 411 FIAATP 416
            I  TP
Sbjct: 403 VILITP 408


>gi|327412691|emb|CAX67687.1| putative Type IV pilus lipoprotein (PilN) [Yersinia enterocolitica]
          Length = 562

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 92/268 (34%), Gaps = 41/268 (15%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFG 235
           + ++  N     QV L V +  V +   +Q G          +  G+S   +   AAD  
Sbjct: 306 RYIDYQNELLNRQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINAADNA 365

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   D +          E ++ AL +   +  + E     I+     F    Q  Y
Sbjct: 366 FSGGLSILDTATGPAAKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGY 425

Query: 296 KTVSS----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLR----------IQTE 335
              SS          S+  T + T   G+ +   P +   G + L+          IQ  
Sbjct: 426 IQSSSTTATANAGTTSSMQTGIIT--TGLFMSMLPYIQENGDVQLQFAFTLSDKPTIQPF 483

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPI 393
            S    G    D P++++R    TV + +G T+VL G  + D    K+G   P       
Sbjct: 484 FSHD--GNTRTDTPAFKLRSLTQTVNMRAGQTLVLTGADQLDSVANKQGAFTPG------ 535

Query: 394 LGALF-RNSRFNREETEIFIAATPFLVK 420
              LF      +   T + I  TP L++
Sbjct: 536 -NFLFGGGHVGSDTRTTLVILITPVLLR 562


>gi|171322813|ref|ZP_02911537.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia ambifaria MEX-5]
 gi|171091832|gb|EDT37330.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia ambifaria MEX-5]
          Length = 346

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 80/245 (32%), Gaps = 26/245 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   S+   +       +  F    ++  GD S   +  
Sbjct: 100 SRQVMLNVTVLSVSLKAGDAYGIDWSLVYKTVSAQFGISNPFTPAALTP-GDLSATVLSP 158

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V  
Sbjct: 159 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 218

Query: 308 ------TTHDYGVVLHFTPTVLSPGRIGLRIQTEV----------SEPVIGVNAGDMPSY 351
                  T   G  +   P VL  G + L+  T +          S    G      P  
Sbjct: 219 STALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKDVSSSTGSGATRIQTPDV 278

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
            +R     V + SG T+V++G    +    + GI      P + AL       R    I 
Sbjct: 279 DMRNFLQRVAMKSGETLVISGYEGTNDSLDERGI----GTPKMIALGGGYEAQRSREVIV 334

Query: 412 IAATP 416
           I  TP
Sbjct: 335 ILITP 339


>gi|327412973|emb|CAX67991.1| PilN (lipoprotein) [Salmonella enterica subsp. VII]
          Length = 560

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 82/258 (31%), Gaps = 26/258 (10%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            +   N     QV L V +  V     +Q+G   +I   S   + +   +  G   +   
Sbjct: 303 YVEQQNRQMNRQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDIANATS 362

Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                 D +            ++ AL     +  +        +          Q +Y  
Sbjct: 363 ASVSILDTATGNAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVA 422

Query: 298 VSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------- 341
            SS+T  T V             G  +   P +   G + L++   +S+P          
Sbjct: 423 QSSTTTTTDVGATTSLTPGMMTTGFNMTLLPLIQDDGDVQLQVAFNLSDPPTIRNFTSKD 482

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G +  +MP  ++R       L +G  +VL G  + + +  K G        +LG      
Sbjct: 483 GNSYIEMPYTKLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGR 538

Query: 402 RFNREETEIFIAATPFLV 419
             +   + + I  TP L+
Sbjct: 539 DGDDSRSTLVIIITPELM 556


>gi|37525036|ref|NP_928380.1| hypothetical protein plu1051 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784462|emb|CAE13346.1| pilN [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 567

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 90/264 (34%), Gaps = 27/264 (10%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGG 236
           S  + +   N     QV L V +  V     +Q+G    +  +S    G + S +    G
Sbjct: 308 SVSRYVEEQNTVLNRQVLLNVQVLSVSTSRKEQMGLDWGLVYNSLHNLGATLSGSFSGMG 367

Query: 237 KFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
              +  G   ++    + +       ++ AL     +  +        +          Q
Sbjct: 368 SGTTSAGVSILESATGKAAKLSGSSLLIKALSEQGNVSVVTSQGSATTNLTPIPIQMADQ 427

Query: 293 HLYKTVSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341
            +Y   SS+T AT V             G  +   P +   G + L++   +S+P     
Sbjct: 428 TVYVAQSSTTTATDVGATTALTPGMITTGFNMTLLPLIQRNGDVQLQVAFNLSDPPTIRS 487

Query: 342 -----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                G +  +MP  R+R     V L +G  +VL G  + D +  K G        +LG 
Sbjct: 488 FTSKEGNSYIEMPYTRLRSLSQKVNLRAGQALVLTGFEQADTRVTKTGTFTPGNF-LLG- 545

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
                    + + + I  TP L+ 
Sbjct: 546 --GGQSGENQRSTLVILITPVLLD 567


>gi|49658861|emb|CAF28487.1| putative lipoprotein [Yersinia pseudotuberculosis]
          Length = 530

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 91/266 (34%), Gaps = 37/266 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           + ++  N     QV L V +  V +   +Q G    +   S     +  A   G  ++  
Sbjct: 274 RYIDHQNELLNRQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLN---NIGASVTGNLINAA 330

Query: 243 GDFSVKGVL----------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            +    G+                E ++ AL +   +  + E     I+     F    Q
Sbjct: 331 NNTLSGGLSILDTATGPAEKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQ 390

Query: 293 HLYKTVSSST---GATSVTTHDYGVV-----LHFTPTVLSPGRIGLR----------IQT 334
             Y   SS+T    A + ++   G++     +   P +   G + L+          IQ 
Sbjct: 391 TGYIQSSSTTVTANAGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPIIQP 450

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
             S    G    D P++++R    TV L +G T+VL G  + D    K+G    S     
Sbjct: 451 FFSRD--GNTRNDTPAFKLRSLTQTVNLRAGQTLVLTGADQLDTVANKQGAFTPSNF--- 505

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
                        T + I  TP L++
Sbjct: 506 -WWGGGHNGLETRTTLVILITPVLLR 530


>gi|261226370|ref|ZP_05940651.1| type IV pilus outer membrane secretin lipoprotein PilN [Escherichia
           coli O157:H7 str. FRIK2000]
          Length = 547

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 90/259 (34%), Gaps = 27/259 (10%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S ++++N  N     QV L V I  +++   +Q G   +   +      S    FG    
Sbjct: 285 SVQEIVNKRNNEMSRQVVLNVEILSIKKSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAE 344

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA---------ISGQSASFTSG 290
           +                +  L AL    ++  + + +            I+ Q     S 
Sbjct: 345 NVITSGVSIVDGKLAGSKAFLKALSSQGSVSVVTQNSAVTKNLTPVPMQIANQQGFIESV 404

Query: 291 GQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVI 341
                  V SST   A ++TT   G  +   P +            + L  +        
Sbjct: 405 TTDSTANVGSSTSLNAATITT---GFNMTLLPYIQPDSQNLQLLFSMSLSDKPTFEVFES 461

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI-PILGALFRN 400
           G +    P+  ++  + T++L SG T++L+G  + + +  K+G+     I P    L   
Sbjct: 462 GGSKAQTPNVDLKTINQTIDLKSGQTVILSGFQQSNRKTSKQGV-----ITPSFFGLGGG 516

Query: 401 SRFNREETEIFIAATPFLV 419
                 +T + +  TP ++
Sbjct: 517 INSEDGDTILVVLITPNVL 535


>gi|160902548|ref|YP_001568129.1| hypothetical protein Pmob_1087 [Petrotoga mobilis SJ95]
 gi|160360192|gb|ABX31806.1| hypothetical protein Pmob_1087 [Petrotoga mobilis SJ95]
          Length = 694

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 9/164 (5%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           L    F+ +++          +++P +    G  AS  S                 V+  
Sbjct: 526 LLTLQFDGIING--SKDKASLISKPVIYVNEGGRASIKSVLSVPVFDEEGKI----VSKI 579

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + G ++  +        I   + TE+   +  +   D      R  ++   +P+GG I L
Sbjct: 580 ESGFIMEVS---GEYDNITKMVNTELDISISELKNEDKNIVDERNMNSKFIIPNGGFIKL 636

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            GL    I + + GIP+  +IP++G LF +        ++ I  
Sbjct: 637 GGLNFTSIVENETGIPIFKEIPVIGQLFTSYEKTENVYDLVILI 680


>gi|320198845|gb|EFW73444.1| IncI1 plasmid conjugative transfer lipoprotein PilN [Escherichia
           coli EC4100B]
          Length = 547

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 90/259 (34%), Gaps = 27/259 (10%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S ++++N  N     QV L V I  +++   +Q G   +   +      S    FG    
Sbjct: 285 SVQEIVNKRNNEMSRQVVLNVEILSIKKSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAE 344

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA---------ISGQSASFTSG 290
           +                +  L AL    ++  + + +            I+ Q     S 
Sbjct: 345 NVITSGVSIVDGKLAGSKAFLKALSSQGSVSVVTQNSAVTKNLTPVPMQIANQQGFIESV 404

Query: 291 GQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVI 341
                  V SST   A ++TT   G  +   P +            + L  +        
Sbjct: 405 TTDSTANVGSSTSLNAATITT---GFNMTLLPYIQPDSQNLQLLFSMSLSDKPTFEVFES 461

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI-PILGALFRN 400
           G +    P+  ++  + T++L SG T++L+G  + + +  K+G+     I P    L   
Sbjct: 462 GGSKAQTPNVDLKTINQTIDLKSGQTVILSGFQQSNRKTSKQGV-----ITPSFFGLGGG 516

Query: 401 SRFNREETEIFIAATPFLV 419
                 +T + +  TP ++
Sbjct: 517 INSEDGDTILVVLITPNVL 535


>gi|301646351|ref|ZP_07246238.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 146-1]
 gi|301075418|gb|EFK90224.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 146-1]
          Length = 547

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 90/259 (34%), Gaps = 27/259 (10%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           S ++++N  N     QV L V I  +++   +Q G   +   +      S    FG    
Sbjct: 285 SVQEIVNKRNNEMSRQVVLNVEILSIKKSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAE 344

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA---------ISGQSASFTSG 290
           +                +  L AL    ++  + + +            I+ Q     S 
Sbjct: 345 NVITSGVSIVDGKLAGSKAFLKALSSQGSVSVVTQNSAVTKNLTPVPMQIANQQGFIESV 404

Query: 291 GQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVI 341
                  V SST   A ++TT   G  +   P +            + L  +        
Sbjct: 405 TTDSTANVGSSTSLNAATITT---GFNMTLLPYIQPDSQNLQLLFSMSLSDKPTFEVFES 461

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI-PILGALFRN 400
           G +    P+  ++  + T++L SG T++L+G  + + +  K+G+     I P    L   
Sbjct: 462 GGSKAQTPNVDLKTINQTIDLKSGQTVILSGFQQSNRKTSKQGV-----ITPSFFGLGGG 516

Query: 401 SRFNREETEIFIAATPFLV 419
                 +T + +  TP ++
Sbjct: 517 INSEDGDTILVVLITPNVL 535


>gi|10955502|ref|NP_065354.1| type IV pilus outer membrane secretin lipoprotein PilN [Escherichia
           coli]
 gi|9971696|dbj|BAB12647.1| pilN [Escherichia coli]
 gi|326344460|gb|EGD68213.1| IncI1 plasmid conjugative transfer lipoprotein PilN [Escherichia
           coli O157:H7 str. 1125]
          Length = 547

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 95/261 (36%), Gaps = 31/261 (11%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GK 237
           S ++++N  N     QV L V I  +++   +Q G   +   +      S    FG   +
Sbjct: 285 SVQEIVNKRNNEMSRQVVLNVEILSIKKSSQEQAGIDWNAVFNDGHLGLSLGGSFGDAAE 344

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA---------ISGQSASFT 288
            V   G   V G L     +  L AL    ++  + + +            I+ Q     
Sbjct: 345 NVITSGVSIVDGKLAGS--KAFLKALSSQGSVSVVTQNSAVTKNLTPVPMQIANQQGFIE 402

Query: 289 SGGQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEP 339
           S        V SST   A ++TT   G  +   P +            + L  +      
Sbjct: 403 SVTTDSTANVGSSTSLNAATITT---GFNMTLLPYIQPDSQNLQLLFSMSLSDKPTFEVF 459

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI-PILGALF 398
             G +    P+  ++  + T++L SG T++L+G  + + +  K+G+     I P    L 
Sbjct: 460 ESGGSKAQTPNVDLKTINQTIDLKSGQTVILSGFQQSNRKTSKQGV-----ITPSFFGLG 514

Query: 399 RNSRFNREETEIFIAATPFLV 419
                   +T + +  TP ++
Sbjct: 515 GGVNSEDGDTILVVLITPNVL 535


>gi|213618889|ref|ZP_03372715.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 392

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 70/188 (37%), Gaps = 11/188 (5%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 211 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 266

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G       + D  +F   L+ALE+++    L++P++  ++   A         + T 
Sbjct: 267 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 323

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP +L+     +I L +  +  +     +  D +P  +  
Sbjct: 324 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 383

Query: 355 KADTTVEL 362
           +  +   L
Sbjct: 384 EIASQATL 391


>gi|195953100|ref|YP_002121390.1| Type II secretory pathway component PulD-like [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932712|gb|ACG57412.1| Type II secretory pathway component PulD-like [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 488

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 76/202 (37%), Gaps = 24/202 (11%)

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ--------SASFTS 289
            ++   +      L   +++ +L+ALE+    +++   T T +  Q        + S+ S
Sbjct: 280 TLTNPSNSLFNAGLSGSNYDALLNALEQYGKTKSIDSETYTVLPNQPIVYAPTNTQSYIS 339

Query: 290 GGQHLYKTVSSSTGATS-----VTTHDYGVVLHFTPTVLSPGRIGLRIQ------TEVSE 338
                     +   +T      V+  + G  +   P + +  ++ + +         ++ 
Sbjct: 340 SYNIYIPPTVAGVVSTPAYIPIVSYLNTGTSITILPRLANNKKLMVDVYYSQNTPQNLNT 399

Query: 339 PVIGVNAGDMPSYRVRKADT-----TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             I ++ G     +  +  +     T  L  G TI L   + D  +  + GIP L +IP+
Sbjct: 400 QNITISQGVTVPIQFPEVSSQNSVLTSVLKPGQTIALISSVYDLKKNNEAGIPFLIRIPL 459

Query: 394 LGALFRNSRFNREETEIFIAAT 415
           +  LF N+     + +  I  T
Sbjct: 460 IKYLFGNTDKYSNKVQFIITIT 481


>gi|123443695|ref|YP_001007666.1| putative type IV pilus operon lipoprotein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090656|emb|CAL13527.1| putative type IV pilus operon lipoprotein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 562

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 92/268 (34%), Gaps = 41/268 (15%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFG 235
           + ++  N     QV L V +  V +   +Q G          +  G+S   +   AAD  
Sbjct: 306 RYIDYQNELLNRQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINAADNA 365

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   D +          E ++ AL +   +  + E     I+     F    Q  Y
Sbjct: 366 FSGGLSILDTATGPAAKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGY 425

Query: 296 KTVSS----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLR----------IQTE 335
              SS          S+  T + T   G+ +   P +   G + L+          IQ  
Sbjct: 426 IQSSSTTATANAGTTSSMQTGIIT--TGLFMSMLPYIQENGDVQLQFAFTLSDKPTIQPF 483

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPI 393
            S    G    D P++++R    TV + +G T+VL G  + D    K+G   P       
Sbjct: 484 FSRD--GNTRTDTPAFKLRSLTQTVNMRAGQTLVLTGADQLDSVANKQGAFTPG------ 535

Query: 394 LGALF-RNSRFNREETEIFIAATPFLVK 420
              LF      +   T + I  TP L++
Sbjct: 536 -NFLFGGGHVGSDTRTTLVILITPVLLR 562


>gi|153947286|ref|YP_001402688.1| type IVB pilus formation outer membrane protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|152958781|gb|ABS46242.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Yersinia pseudotuberculosis IP 31758]
          Length = 530

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 94/263 (35%), Gaps = 31/263 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----DFGGKF 238
           + ++  N     QV L V +  V +   +Q G    +   S     +       +     
Sbjct: 274 RYIDHQNELLNRQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINVANNT 333

Query: 239 VSEGGDF--SVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           +S G     +  G  ++FS  E ++ AL +   +  + E     I+     F    Q  Y
Sbjct: 334 LSGGLSILDTATGPAEKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGY 393

Query: 296 KTVSSST---GATSVTTHDYGVV-----LHFTPTVLSPGRIGLR----------IQTEVS 337
              SS+T    A + ++   G++     +   P +   G + L+          IQ   S
Sbjct: 394 IQSSSTTVTANAGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPIIQPFFS 453

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
               G    D P++++R    TV L +G T+VL G  + D    K+G    S        
Sbjct: 454 RD--GNTRNDTPAFKLRSLTQTVNLRAGQTLVLTGADQLDTVANKQGAFTPSNF----WW 507

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
                     T + I  TP L++
Sbjct: 508 GGGHNGLETRTTLVILITPVLLR 530


>gi|213418601|ref|ZP_03351667.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 138

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 4/116 (3%)

Query: 308 TTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELP 363
            +   G +L  TP +L+     +I L +  +  +     +  D +P  +  +  +   L 
Sbjct: 16  ESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLL 75

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G +++L G  +      +  IPLL  IP++G LFRN                 +V
Sbjct: 76  AGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVV 131


>gi|327412816|emb|CAX67822.1| putative pilus assembly protein [Salmonella bongori]
          Length = 560

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 82/258 (31%), Gaps = 26/258 (10%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            +   N     QV L V +  V     +Q+G   +I   S   + +   +  G   +   
Sbjct: 303 YVEQQNRQMNRQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNAAS 362

Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                 D +            ++ AL     +  +        +          Q +Y  
Sbjct: 363 ASVSILDSATGSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVA 422

Query: 298 VSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------- 341
            SS+T  T V             G  +   P +   G + L++   +S+P          
Sbjct: 423 QSSTTTTTDVGATTSLTPGMMTTGFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKD 482

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G +  +MP  ++R       L +G  +VL G  + + +  K G        +LG      
Sbjct: 483 GNSYIEMPYTKLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGR 538

Query: 402 RFNREETEIFIAATPFLV 419
             +   + + I  TP L+
Sbjct: 539 DGDDSRSTLVIIITPELM 556


>gi|222147187|ref|YP_002548144.1| pilus subunit transmembrane protein [Agrobacterium vitis S4]
 gi|221734177|gb|ACM35140.1| pilus subunit transmembrane protein [Agrobacterium vitis S4]
          Length = 159

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 13/122 (10%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
              +           +A +P    A   ++              + +N+  IL++   V 
Sbjct: 14  LPMLFRCCFAFLLAGMATVPGTAHAEDPLLR-------------VVMNQARILKLDRPVS 60

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            V++ +   AD  V  P+T+ L G++ G  N++L+   G  + +  IL+  D A+     
Sbjct: 61  KVIIGNEKVADATVADPKTIVLTGRSFGTTNLVLLDSQGNAIFDERILVSIDEANTVRLY 120

Query: 128 RR 129
           ++
Sbjct: 121 KQ 122


>gi|323669655|emb|CBJ94777.1| pilus assembly protein [Salmonella bongori]
          Length = 560

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 82/258 (31%), Gaps = 26/258 (10%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            +   N     QV L V +  V     +Q+G   +I   S   + +   +  G   +   
Sbjct: 303 YVEQQNRQMNRQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNATS 362

Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                 D +            ++ AL     +  +        +          Q +Y  
Sbjct: 363 ASVSILDSATGSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVA 422

Query: 298 VSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------- 341
            SS+T  T V             G  +   P +   G + L++   +S+P          
Sbjct: 423 QSSTTTTTDVGATTSLTPGMMTTGFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKD 482

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           G +  +MP  ++R       L +G  +VL G  + + +  K G        +LG      
Sbjct: 483 GNSYIEMPYTKLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGR 538

Query: 402 RFNREETEIFIAATPFLV 419
             +   + + I  TP L+
Sbjct: 539 DGDDSRSTLVIIITPELM 556


>gi|255624862|ref|XP_002540535.1| conserved hypothetical protein [Ricinus communis]
 gi|223495099|gb|EEF21848.1| conserved hypothetical protein [Ricinus communis]
          Length = 150

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E  K  ++++ + K  ++++P  VQ   V +P     ++ +P T+Y+ G +VG  N+I+ 
Sbjct: 58  EAAKPAQLALQVGKSSLMRLPEPVQHRSVGNPLVVQALMVAPDTLYIAGVDVGTTNMIIQ 117

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
           G  G     LDI +  D + L+  L   + D +
Sbjct: 118 GKSG-LCSVLDITVAMDPSALQAMLATAMPDEH 149


>gi|153829316|ref|ZP_01981983.1| MSHA biogenesis protein MshL [Vibrio cholerae 623-39]
 gi|148875216|gb|EDL73351.1| MSHA biogenesis protein MshL [Vibrio cholerae 623-39]
          Length = 429

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 22/145 (15%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----D 233
           ++V   L I+ +    QV L+  I EV      Q G   S   SS+G S +  +     D
Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQD 320

Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             G  ++             GG  +V  V+   SF+ V+  +     +  L+ P +TA +
Sbjct: 321 SNGNPITSVLPGLDAIGNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 378

Query: 282 GQSASFTSGGQHLYKTVSSSTGATS 306
            Q A    G    Y T  SS   T 
Sbjct: 379 NQKAVIKVGTDEYYVTDLSSVVGTG 403


>gi|217425271|ref|ZP_03456766.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 576]
 gi|217391876|gb|EEC31903.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 576]
          Length = 349

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 101 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 160

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 161 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 220

Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350
                      G  +   P VL  G + L+  T +S       V     G        P 
Sbjct: 221 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 280

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 281 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 336

Query: 411 FIAATP 416
            I  TP
Sbjct: 337 VILITP 342


>gi|319428145|gb|ADV56219.1| type II and III secretion system protein [Shewanella putrefaciens
           200]
          Length = 492

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 121/340 (35%), Gaps = 55/340 (16%)

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L   D  Q  N+   +  +I      +   + + N+  ++  +  +  G + T+    R 
Sbjct: 188 LFNADQDQFANIKATVSSEIEDAVKVIESMMGEKNVNGQVHPN--IASGTL-TVTTKPRI 244

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           +   E ++ Q                 LN      V + V I   + ++    G   ++ 
Sbjct: 245 MRDVENYVKQ-----------------LNAMFGQMVRIDVQIITFQSNLDNSFGVDWNMV 287

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
             ++  + +F     G+  + G  F+    L   S   +++AL+    +  +  P++ AI
Sbjct: 288 RETTKGTLNFTIPSSGE--TSGLTFASTDKLFNGS-TALVNALKTQGNVSLVTTPSMLAI 344

Query: 281 SGQSASFTSGGQHLYK---TVSSSTGATSVTTHDY-------GVVLHFTPTVLSPGRIGL 330
           + +     S  +  Y    T+  +T   S T  +        G  +     +     + +
Sbjct: 345 NNRVGEIESLRKEAYVKDITMREATNEDSSTYSEVNQGVVSEGFSMRALVKI-DGDEVLM 403

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVR-------KADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           ++   +S  +      +MP+  ++       + +  +++ +G T++L+G  +  +   + 
Sbjct: 404 QMSATISR-LGNFGTVEMPTITLKTPNMSEDRFNQPLKIQNGRTVILSGYTQSAVTSEQS 462

Query: 384 ---GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                PLL            +     ++   +  TP +++
Sbjct: 463 ESFRNPLLG----------GNSGKERKSHTLVLVTPRIIR 492


>gi|149925851|ref|ZP_01914115.1| type II and III secretion system protein [Limnobacter sp. MED105]
 gi|149825968|gb|EDM85176.1| type II and III secretion system protein [Limnobacter sp. MED105]
          Length = 531

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 93/263 (35%), Gaps = 33/263 (12%)

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------GGDFSVKGVLD 252
           + +V  +    +G +  +  +  G + +  +   G   +                    +
Sbjct: 241 VLQVDLNDSNNMGVRWELYKAGGGINTAPDSSIAGASSTADRITQLTRTASGIETLIFGE 300

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSV 307
            FS   ++  L+    ++TL++P +  ++G + +   G    + +     + +    ++ 
Sbjct: 301 NFSTNFLIDFLKSQGDVKTLSQPKIGLMNGTNGNIRVGQSTTFVSRVGSQIVNGVAQSTA 360

Query: 308 TTHDYGVVLHFT-------PTVLSPGRIGL-RIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            T +    L  +        T+ +   I +  +        +GV+   +P    R+  T 
Sbjct: 361 DTQNLRTGLEVSLTGEAHDSTIYTRINISITELLALKRFTALGVDLN-LPEVADRELKTQ 419

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V    G TI+L G+     Q   +          LG   R+   + ++TE+ +   P L+
Sbjct: 420 VRCRPGDTILLGGITVSRAQDDFQS--------GLGT--RSRTESTKQTELVVTIRPRLL 469

Query: 420 KPVAMRDLSRPDDHYSVEDDAKA 442
               + +L +P        + KA
Sbjct: 470 LFGEVAELEQPAAKIKRRIEPKA 492


>gi|225872364|ref|YP_002753819.1| transporter, outer bacterial membrane secretin (Secretin) family
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793711|gb|ACO33801.1| transporter, outer bacterial membrane secretin (Secretin) family
           [Acidobacterium capsulatum ATCC 51196]
          Length = 616

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 2/149 (1%)

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
               G S++  S G      +S+      V   D G+ LH TP+V   G + L+      
Sbjct: 460 LTSPGVSSALQSLGISSSSLLSTEETIPQVQYEDLGLTLHVTPSVTGRGNVALK-LDLKL 518

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           + + G +   +P    R+      +  G + ++   +   +     GIP LS++P  G  
Sbjct: 519 DTLEGQSLNSIPVLNDRELTAITTVKPGSSAMIMSSMSQQLSNAVTGIPGLSELPGFGNA 578

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426
             NS  ++  + + I  TP +V+ V   +
Sbjct: 579 -TNSDASKNISRLVIVVTPRIVRRVHAEE 606


>gi|149175013|ref|ZP_01853636.1| bacterial type II/III secretion system protein [Planctomyces maris
           DSM 8797]
 gi|148845991|gb|EDL60331.1| bacterial type II/III secretion system protein [Planctomyces maris
           DSM 8797]
          Length = 308

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 19/167 (11%)

Query: 255 SFETVLHALERATAIRTLA-EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
           + E  +  L++A  +  +   P +  +SGQSA+  SGG++    + +    TSV    +G
Sbjct: 152 NAEEAIEQLKKAGRVTVVHGSPEIVTVSGQSATSMSGGKYPV-LIPAGDNQTSVEWKRFG 210

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           V     P +L  GRI L    E+S+      + VN   +P   VR+  T  E+  G T+V
Sbjct: 211 VFCKVEPRLLDNGRIQLEFSPEISQRDYANAVKVNGLTIPGLTVRRIYTQAEMNLGETLV 270

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +         +     P   +  ++ A  ++   + E+T      TP
Sbjct: 271 V---------RTVS--PAGGQSQVVNA--KSDTTSSEDTVTLFMVTP 304


>gi|114798749|ref|YP_761695.1| hypothetical protein HNE_3018 [Hyphomonas neptunium ATCC 15444]
 gi|114738923|gb|ABI77048.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 147

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 51/96 (53%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
            +K A  A+ ++        +++S+  +K + L++      ++V +   ADV VH  R +
Sbjct: 4   AVKPALVALASLFLAGTAFAQQLSVEASKTVPLRLTGPAASIVVGNKNIADVAVHDDRLI 63

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           ++ GK+ G  N+++    G+++ + ++++  + + L
Sbjct: 64  FVTGKSYGTTNLMVFNKAGEEVYSAEVVVTANSSSL 99


>gi|59714382|ref|YP_207156.1| hypothetical protein VF_B0026 [Vibrio fischeri ES114]
 gi|59482659|gb|AAW88268.1| hypothetical protein VF_B0026 [Vibrio fischeri ES114]
          Length = 479

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 102/322 (31%), Gaps = 41/322 (12%)

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           LN++    + +  +  +L + +   +I  + +S +  L   V       +  ++      
Sbjct: 182 LNVEYKDVQIVDEIAASLEKVLGGDDIAKKSISVSPALS-SVTVTATIDQMQDI------ 234

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                       + V++        QV L + + E R ++  +     +I   +      
Sbjct: 235 ------------EYVIDHYKKELSKQVILDIQMIEFRSNLGTEHSIDWNIVKDTGNGLLQ 282

Query: 230 FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           F            G   +  G       E+ +  LE+  ++ T    T   ++ Q A  T
Sbjct: 283 FFVPGTTTISQGAGYGLAFTGKGKWTGTESFIRVLEQQGSVSTQTPITAMILNNQPAKIT 342

Query: 289 SGGQHLYKTVSSSTGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV----- 336
                 Y   +SS  +  V +          GV +    +++    + LRI  ++     
Sbjct: 343 QQNVIPYIYEASSESSEGVISASVTRKTEVEGVDMMVN-SIIQDEYVSLRISGQLQKIFN 401

Query: 337 -SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            S   +G     M S +  +     +L  G T V+A + +      +             
Sbjct: 402 RSTEKVGDVNLGMLSTQKSEITFANKLRYGQTFVIASVKQTSKTAEQTKSFWT------- 454

Query: 396 ALFRNSRFNREETEIFIAATPF 417
            LF  +    +  E  +  TP 
Sbjct: 455 ELFGGTGTRNDTVETLVLLTPR 476


>gi|238796228|ref|ZP_04639738.1| Type II secretory pathway, component PulD [Yersinia mollaretii ATCC
           43969]
 gi|238719921|gb|EEQ11727.1| Type II secretory pathway, component PulD [Yersinia mollaretii ATCC
           43969]
          Length = 555

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 82/250 (32%), Gaps = 29/250 (11%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKG 249
            QV +KV +     D      F  +    +     G   +     G   V         G
Sbjct: 303 RQVAIKVDVYSFNVDRNSNWQFDLTAKFKTGVAQYGVGSTAMLSDGSNLVGSLTSSITGG 362

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-------SSST 302
             D    + VL+ LE+   +  +    +T +SGQ           Y +        + +T
Sbjct: 363 RFDGS--KAVLNMLEQNGDVSVVTTANVTTMSGQPVPVQVSNSRGYVSAVKVEMNDNKTT 420

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------------MPS 350
                +    G  ++  P V+  G++ ++    +S  V   N  +            +P+
Sbjct: 421 TTAESSMVTAGFSMNILPNVMDDGKVLMQYNMNISTLVGKDNGFETVIIDNNGTKMQLPN 480

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R    +  + +G T+V+AG  +        G    +   +LG    N +  +    +
Sbjct: 481 VDQRSFIQSGMVNNGSTLVMAGFEQVLNNSGDSGQ-GSANFKLLG---GNRKGQQSREIL 536

Query: 411 FIAATPFLVK 420
            I  TP ++ 
Sbjct: 537 VICITPVVLD 546


>gi|114568966|ref|YP_755646.1| hypothetical protein Mmar10_0415 [Maricaulis maris MCS10]
 gi|114339428|gb|ABI64708.1| conserved hypothetical protein [Maricaulis maris MCS10]
          Length = 152

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 46/91 (50%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           A A  + I  V       +++ +    ++++P +   ++V +P+ AD +VH  RT+ + G
Sbjct: 6   ATAFTLAIVCVAPAAAHDLAVPVEHAEVIRLPAEASAIVVGNPSIADALVHDGRTLVVTG 65

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           +  G+ NVI +   G+ +   DI++   +  
Sbjct: 66  RLQGRTNVIALDRVGRVIYERDIVVSNPVEG 96


>gi|171315562|ref|ZP_02904798.1| putative bacteriophage-related lipoprotein [Burkholderia ambifaria
           MEX-5]
 gi|171099399|gb|EDT44137.1| putative bacteriophage-related lipoprotein [Burkholderia ambifaria
           MEX-5]
          Length = 142

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 11/140 (7%)

Query: 280 ISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           +SGQS     G Q            S T   SV   D G++    PTV++        + 
Sbjct: 1   MSGQSVRLNVGSQVPTLGSISYQGPSGTPVQSVQYQDAGLIFDVQPTVMADSIQVKLNEE 60

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
             S         + P+   R+  TTV L  G  +VL GL++D   +     P       L
Sbjct: 61  MSSFVATSTGVNNSPTKNTRQMATTVNLKDGEVVVLGGLVQDTDTRSTNS-PG-----WL 114

Query: 395 GALFRNSRFNREETEIFIAA 414
                    ++  TE+ +  
Sbjct: 115 PKFLDGHSASKGRTEVLLVL 134


>gi|83859353|ref|ZP_00952874.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852800|gb|EAP90653.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 146

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 52/97 (53%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            AA++    + + + ++  +  ++  ++++P D   V+V +P  AD +++  RT+++ GK
Sbjct: 7   AAALVMTLGLGVAQAREFVVTADQAGLIRLPGDASGVIVGNPGIADAMLYDSRTLFVTGK 66

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
             G+ N+I++   G+ +   D+++ +  +      R 
Sbjct: 67  VFGRTNLIVLDEAGRVLYTSDLVVTQPDSQTVQVFRS 103


>gi|262360319|gb|ACY57040.1| putative membrane transport protein [Yersinia pestis D106004]
          Length = 104

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%)

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
             +  +A P L     Q+AS   G    Y        A ++   +  + +  TP +L  G
Sbjct: 20  NQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNG 79

Query: 327 RIGLRIQTEVSEPVIGVNAGD 347
           +I L ++   + P I +  G+
Sbjct: 80  KIILDLKISQNMPGITIKRGE 100


>gi|239833241|ref|ZP_04681570.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG
           3301]
 gi|239825508|gb|EEQ97076.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG
           3301]
          Length = 139

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
             S      +P +  A  AVI ++  +      I++  ++  IL++      V++ +P+ 
Sbjct: 5   LFSLGGFGVVPAMGAAFMAVIAVA--QASAEDYIALETSQARILRLARPADSVVIGNPSI 62

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           AD VV   +T+ L GK+ G  N++++   G+ +L+ ++++ R+        R+ 
Sbjct: 63  ADAVVQDAQTIVLTGKDFGVTNIVVMDKQGEPILDRELVVSRNTRGTTRIYRQA 116


>gi|150021136|ref|YP_001306490.1| secretin/TonB, short N-terminal domain [Thermosipho melanesiensis
           BI429]
 gi|149793657|gb|ABR31105.1| Secretin/TonB, short N-terminal domain [Thermosipho melanesiensis
           BI429]
          Length = 369

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 79/218 (36%), Gaps = 23/218 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++NL++        +K+ + E+  + L++ G + S    ++    S+  +         
Sbjct: 152 EIINLID-KKSHIAEIKIKLYEIDEEDLRKFGVEFSSNDETTTLKVSYNNN--------- 201

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
               +   L   +   ++ AL  +   + L   T+   + +SA  ++     Y T+  + 
Sbjct: 202 -ALQLSLDLMDTNLFAIISALISSGKAKILTNGTIFLKANESAKISA-----YTTIDFTL 255

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
               V        +  + TV     + L +               +          +++L
Sbjct: 256 SNDKVIEKKLLNEIEISGTVFVD-HVSLNLTARAEALSPSNKTIGL------TFSNSLDL 308

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                  +AGL  +    ++ GIP L  +PI+G LF+ 
Sbjct: 309 KYNKHYYIAGLSFETTNNIESGIPGLKDLPIIGNLFKT 346


>gi|90409526|ref|ZP_01217562.1| type II secretion system protein [Psychromonas sp. CNPT3]
 gi|90309367|gb|EAS37616.1| type II secretion system protein [Psychromonas sp. CNPT3]
          Length = 98

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 37/81 (45%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
            + K +++ L++  +L +P   + + ++    AD    +   + +FGK VG  ++ ++  
Sbjct: 18  AQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTKIMIFGKRVGSTSLYVLDA 77

Query: 105 DGKQMLNLDILIERDIAHLEM 125
               + +  + +  ++  L  
Sbjct: 78  RENVIYSATVKVNHNVQELNA 98


>gi|221235980|ref|YP_002518417.1| CpaC-like secretion pathway protein [Caulobacter crescentus NA1000]
 gi|220965153|gb|ACL96509.1| CpaC-related secretion pathway protein [Caulobacter crescentus
           NA1000]
          Length = 143

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           ++R    + ++       + A+  PI+  +A               + +   +   + + 
Sbjct: 1   MRRLSLAIAAVATLCGAAAGAQTLPIEPVSAKT-----SGAAVSVDLPVSAGQASYVSLA 55

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
             V+D++V DP+ ADV V + RT+ + GK  G  +++  G +G+ + +  +++  +
Sbjct: 56  GSVRDIVVGDPSIADVSVVNDRTLVVLGKRPGVTSLLAFGANGRPLADRQVVVSEN 111


>gi|167648156|ref|YP_001685819.1| hypothetical protein Caul_4197 [Caulobacter sp. K31]
 gi|167350586|gb|ABZ73321.1| conserved hypothetical protein [Caulobacter sp. K31]
          Length = 131

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 29  IKEANAAVINISDVEIGK---GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
           +  A  A +++     G       +S+   +   + +   V+DV+V +P  ADV + + R
Sbjct: 4   LSLALCACLSLGATAAGAQSLASPLSVSAGQAARISLSAPVRDVVVGNPAVADVSLINER 63

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
           T+ + GK  G   V+     G  + +  +++ 
Sbjct: 64  TLVILGKKAGATTVMAFDARGHALADRQVVVS 95


>gi|120536911|ref|YP_956969.1| Type II secretory pathway component PulD-like [Marinobacter
           aquaeolei VT8]
 gi|120326745|gb|ABM21054.1| Type II secretory pathway component PulD-like [Marinobacter
           aquaeolei VT8]
          Length = 547

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 85/256 (33%), Gaps = 18/256 (7%)

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
           A  S  + +  +N     QV L++  A V  +         +   ++        +    
Sbjct: 291 AMESVTEYIEKVNDVFGRQVYLQIRTAAVSVESANDFNVTWNNILNTVNSGAFELSSQTA 350

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
           +  ++        +         L  L        + E  +T +S Q  S          
Sbjct: 351 EVPTQNLPNVFNVIRTSNGASLALELLASELESTEVNEQAVTTLSNQPTSLKVLTETGYI 410

Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPVIGVN-A 345
            G      TV++    + V T    +    T  P V+S  R+ L++  E+S  +  VN  
Sbjct: 411 SGISQQDATVNADNLVSDVQTDTVNIGFDATLLPRVISESRLQLQVALELSSNLTLVNFD 470

Query: 346 GDMPSYRVRKADTTVE---LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             +     R  ++ V+   L +G T VLA          ++G       P    L   + 
Sbjct: 471 STIVQTPTRDRNSVVQRAWLRNGETWVLAAFNSSKSSNQEQGT---GD-PGFWGLGGGTS 526

Query: 403 FNREETEIFIAATPFL 418
            ++EE  + +  TP +
Sbjct: 527 KSKEEQILLVMITPHI 542


>gi|332283584|ref|YP_004415495.1| PilN family type IV pilus biogenesis protein [Pusillimonas sp.
           T7-7]
 gi|330427537|gb|AEC18871.1| PilN family type IV pilus biogenesis protein [Pusillimonas sp.
           T7-7]
          Length = 575

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 94/270 (34%), Gaps = 34/270 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           + ++ +N     Q  L VT+A V       +G   ++   S+  S ++ A          
Sbjct: 313 QYIDKINERMSRQAMLYVTVASVTLTDSDSLGINWNLVWQSA--SGNYGAGLMNALSPLE 370

Query: 243 GDFSVK-GVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           G  SV  G+LD  +         + +L AL +  A+  + +  +T    Q        + 
Sbjct: 371 GASSVGFGILDTATGRAGQFAGTQAILSALSKQGAVSIMRQRGVTTQHLQPTPIHLTNEE 430

Query: 294 LYKTVSSSTGATSVTTHD--------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            Y    S T    V + +         G  +   P +     + L+    +S P +    
Sbjct: 431 QYVCGRSQTNTAQVGSTESIQMCSVVTGFAMDILPDIH-GQNLTLQFSLNMSPPAVIQQV 489

Query: 346 GDMP-------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK-IPILGAL 397
              P       S   +     V + SG T+V++   +      K+GI   S  IP  G +
Sbjct: 490 PGDPDKPVFIASVDRQVFLQRVGMRSGQTLVISDFQEASETSTKQGIGGTSTWIPTGGGV 549

Query: 398 FRNSRFNREETEIFIAATPFLV-KPVAMRD 426
                  +    + I  +P ++  P+ + D
Sbjct: 550 -----REKARKVLVIIISPRIMPNPMDIED 574


>gi|284008046|emb|CBA74162.1| conjugative transfer protein lipoprotein PilN [Arsenophonus
           nasoniae]
          Length = 534

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 122/334 (36%), Gaps = 41/334 (12%)

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAV 161
           G  G  +    I  +     ++ +L   +  +   +       + L     T+ D  R +
Sbjct: 220 GQSGNALSGDAITSQSTSTTIKSSLYADLQGAVKSMLTPGLGRMFLSAGNLTVTDVPRVL 279

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +  E F+ +  +                   + QV L + +  V +    Q+G   +   
Sbjct: 280 DTVERFVDERNQTL-----------------DRQVVLNIEVLSVEKRQKDQLGLDWNAVF 322

Query: 222 SSSGPSKSFAADFGGKFVS--EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           ++     S +  FGG   +   GG   V G L     +  L AL     +  + + + T 
Sbjct: 323 NNGRLGLSLSQAFGGAAGNIMNGGFSVVDGRLAGS--KVFLKALAEQAKVSVVTQQSNTT 380

Query: 280 ISGQSASFTSGGQHLY------KTVSSSTGATSVT--THDYGVVLHFTPTVLSPG-RIGL 330
            +    +     Q  Y      ++ ++   ATS+   T   G  ++  P ++  G  + L
Sbjct: 381 TNLSPVAMQVAEQEDYVAQVTTQSTANVGTATSIQPATITTGFYINLLPNIMPDGQHLLL 440

Query: 331 RIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +    +SEP        G ++ ++ + +++     V++ +G T+VL+G  +   +  K+G
Sbjct: 441 QFAINLSEPPTRRTFTSGESSVELLNTQLKTFTQRVKMKTGQTLVLSGFQQASRKGSKQG 500

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +    + P    L    +    +  + +  TP L
Sbjct: 501 V---GQ-PWFFGLGGGQQAEDGDRMLVVLITPVL 530


>gi|293386468|ref|YP_003540630.1| conjugal transfer protein [Erwinia amylovora ATCC 49946]
 gi|291201111|emb|CBJ48249.1| conjugal transfer protein [Erwinia amylovora ATCC 49946]
          Length = 569

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 92/262 (35%), Gaps = 31/262 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           + +   N A   QV LKV I  V  +    IG   ++   +               V++ 
Sbjct: 312 EYLTSENKALSRQVNLKVVIYTVNSETSDAIGIDWNVIYKTLAGKYGINLAGPSGTVADA 371

Query: 243 GDFS------VKGVLDRFSFETVL-HALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G  S        G   +F+  + L  AL +   +  +    L   +  SAS   G Q  Y
Sbjct: 372 GSLSFSVLDTATGAARQFAGSSFLFEALSKQAKVADVRTIPLMTTNMASASVVVGRQIAY 431

Query: 296 ----KTVSSSTGATSVTTH-------DYGVVLHFTPTVLSPG-RIGLRIQTEVS------ 337
                T   STG+T++ +          G  +   P +L  G R+ L +   +S      
Sbjct: 432 LKSVSTTVYSTGSTTLPSQTLTPGSVTTGTNITIFPKILDGGDRMMLNMFLNISSLIQLR 491

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS-KIPILGA 396
           E        + P    R     V L  G T+V++GL ++     ++G   LS    I G 
Sbjct: 492 EISSDTEKLEAPEVDSRSVPQRVWLKPGQTVVISGLEQNVATSNRQG--QLSPDNQITG- 548

Query: 397 LFRNSRFNREETEIFIAATPFL 418
                  ++      I  TP++
Sbjct: 549 --GQRSGDKTRQSFVITVTPYI 568


>gi|242279172|ref|YP_002991301.1| type II secretory pathway component PulD-like protein
           [Desulfovibrio salexigens DSM 2638]
 gi|242122066|gb|ACS79762.1| Type II secretory pathway component PulD-like protein
           [Desulfovibrio salexigens DSM 2638]
          Length = 497

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 87/251 (34%), Gaps = 33/251 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTI--AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           K +  LN     QV L V +   E+ R+          I         SF+   G  + +
Sbjct: 254 KYIKSLNTKMGRQVALAVKVWALEMNRNA----DVGFDIESMLKAGQSSFSMLGGQPYTT 309

Query: 241 EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-K 296
             G  ++   +   +++    +L AL++      L   +   ++ Q+       +  Y  
Sbjct: 310 LSGAGTLTAAILDGNWKDTKLMLRALKQRGRTTLLTSGSGIVMNNQALPVQVVKRDTYLA 369

Query: 297 TVSSSTGATSVTTHD-------YGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGV 343
            +SS+T   S+ T +        G  +   P +++  +  L+    +S      E   G 
Sbjct: 370 GISSTTTENSMQTSELTPGEVSTGFSMTVIPHIMNNRKAILQYNITLSSLDSMDEFTSGD 429

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +P    R     V++  G T+VLAG  ++  QQ K           +G        
Sbjct: 430 LTIQLPQVSTRSFSQRVKMKCGQTLVLAGFEQETDQQSK----------GIGISAGGHSQ 479

Query: 404 NREETEIFIAA 414
              ++ I I  
Sbjct: 480 KYGKSLIIITI 490


>gi|293602243|ref|ZP_06684692.1| PilN family type IV pilus biogenesis protein [Achromobacter
           piechaudii ATCC 43553]
 gi|292819386|gb|EFF78418.1| PilN family type IV pilus biogenesis protein [Achromobacter
           piechaudii ATCC 43553]
          Length = 582

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 84/256 (32%), Gaps = 27/256 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-------DF 245
             Q    +T+A V+R      G   +    S   +            S  G       D 
Sbjct: 318 TRQALFNITVAVVQRTETDDQGLDLTAVYKSLNGNYGITVANAFTAASSAGSASIGILDT 377

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           +          + +L AL     +  + +P++T ++ Q        Q  Y    S+T   
Sbjct: 378 ATGTAGQFAGSKAILRALSSQGRVSIVTQPSVTTLNYQPVPVQVAKQTSYLAAVSNTATA 437

Query: 306 SV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSY 351
            V         T   G  +   P ++   ++ L+    +S          G N+ ++P  
Sbjct: 438 QVGSTSALTPGTVTTGFSMDLLPFMIDSEQMLLQFTMNLSTDPRLRTVTSGDNSIEVPEV 497

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE-I 410
             R     V L SG T++L+G  ++  +  + G+   S       L           E +
Sbjct: 498 DSRIFSQRVRLRSGQTLILSGFEQNVDRGNRSGMFSPSN-----WLTGGGGSTNNRREVV 552

Query: 411 FIAATPFLVKPVAMRD 426
            I  TP +++  +  D
Sbjct: 553 VILITPIVLEDDSAFD 568


>gi|297592282|gb|ADI47020.1| PilN [Escherichia coli]
          Length = 535

 Score = 73.5 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 95/276 (34%), Gaps = 28/276 (10%)

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
           L+  FL+ +   +  ++ S+ V    N     QV L V +  VR+    Q G   +   S
Sbjct: 269 LATGFLTVTDTPRVLDTVSRFV-EARNREMRRQVVLNVEVLSVRKTRRDQAGIDWNAVFS 327

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHALERATAIRTLAEPTLT 278
                       GG F S   D    GV          +  L AL     +  + + +  
Sbjct: 328 DG----RLGLTLGGAFSSAADDIITSGVSIVDGKLTGSKAFLKALSSQGTVSVVTQNSAV 383

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGR--- 327
             +          Q  Y    ++    +V         T   G  +   P +    R   
Sbjct: 384 TKNMTPVPMQVASQQGYIEGVTTDTTANVGTSTSLNAATITTGFNMTLLPFIQPDARSLQ 443

Query: 328 ----IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
               + L  +        G +   +P+  ++  + T++L SG T++L+G  +   + +++
Sbjct: 444 LLFSMNLSDKPTFEVFESGGSRAQVPTVDLKTINQTIDLKSGQTVILSGFRQSGSKSVRQ 503

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+      P    L   +    ++T + +  TP ++
Sbjct: 504 GV---GS-PAFFGLGGGTDSGDDDTILVVLITPHVI 535


>gi|160873109|ref|YP_001557114.1| hypothetical protein Sbal195_4700 [Shewanella baltica OS195]
 gi|160858631|gb|ABX51854.1| conserved hypothetical protein [Shewanella baltica OS195]
          Length = 492

 Score = 73.1 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 81/257 (31%), Gaps = 32/257 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + ++N +      QV L + I E R +  K+     +I       S  F    G   VS+
Sbjct: 250 RNLVNSVQEQFGQQVVLDIRILEFRSNRGKERSLDWNIIKDVGNGSLEFMI-PGTTTVSQ 308

Query: 242 GGDFSVK--GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           G  + +   G          + ALE+   + T    T   +S + A         Y    
Sbjct: 309 GASYGMAFRGTGKWDGTAAFIRALEQQGTVSTETPITALGLSNRPARIAQTMTTPYIDEI 368

Query: 300 SSTGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DM 348
            S     V T          GV +  TP V+    + L I  ++++ V   N       +
Sbjct: 369 KSESNDKVITASVTRASQSEGVDMMITPKVMDD-AVWLSIAGKLTKIVGKRNETVHDVQL 427

Query: 349 PSYRVRKADTTVE--LPSGGTIVLAGLLKDD---IQQLKEGIPLLSKIPILGALFRNSRF 403
                R+++      L  G T+V+  + +           G+P                 
Sbjct: 428 LFLDTRESEINFTNKLLYGQTVVIGSIKQTSTTAESNSNFGVP------------SGEGT 475

Query: 404 NREETEIFIAATPFLVK 420
                E  +  TP  V+
Sbjct: 476 LSNTVETLVLLTPRKVQ 492


>gi|281356794|ref|ZP_06243285.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316921|gb|EFB00944.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 554

 Score = 73.1 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 107/329 (32%), Gaps = 58/329 (17%)

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-------- 227
           Y+  + ++++   ++   + + +K+ + E+  +   ++G       ++ G          
Sbjct: 223 YSRKNIEEMLRKYDVPLPE-IKIKLNVYELYSENDDKLGVDFQAWKNNEGTDFFSVGGRF 281

Query: 228 -KSFAADFGGKFVSEGGDFSVKGVLDRFSFETV-LHALERATAIRTLAEPTLTAISGQSA 285
             ++AA +GG      G            + T  L  L      +      +T     ++
Sbjct: 282 RDNWAATYGGTMARPQGSERTSFYNFNPKWNTRYLDFLTSKGKAKIAYSGEVTVRQNTTS 341

Query: 286 SFTSGGQHLYKTVS------------------------------------SSTGATSVTT 309
           + +   Q  Y   +                                          +VT 
Sbjct: 342 TLSRTTQIFYTDTTVPPDDTQETIDNWFTRPLDNALQALGRESPGNDIRIGKDNQQNVTR 401

Query: 310 --HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-RKADTTVELPS-G 365
               +G ++      ++P    L+I  + S  +IG  +   P  +       +V + +  
Sbjct: 402 APQSFGFIMTVKAGSIAPEAAILQISLDNSS-LIGYQSSGAPRIQKGNTIRNSVMISTKR 460

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI-----AATPFLVK 420
              V+ GL K ++ +   G+P L  IP LG LF+    +  ++++ +        P  + 
Sbjct: 461 NEFVIGGLEKREVVRGSTGVPYLKDIPGLGYLFQVESESTRKSQLVVAAQCEYVYPESIS 520

Query: 421 PVAMRDLSRP-DDHYSVEDDAKAFFFNRV 448
           P     L R      +       +FFN+ 
Sbjct: 521 PEEYDKLIRSIRTRTADAGGRNHYFFNQY 549


>gi|15667831|gb|AAL05518.1|AF399919_5 PilN [Escherichia coli]
          Length = 539

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 81/263 (30%), Gaps = 19/263 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             N     + +  +   N   + QV L V I  +R+   +Q G   +   S      S  
Sbjct: 281 TDNPQVLETVRAFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLG 340

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           + F                      +  L AL     +  + + +    +          
Sbjct: 341 STFTSAASDAITGGVSIVDGKLTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIAN 400

Query: 292 QHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEV 336
           Q  Y    ++    +V         T   G  +   P +L           + L  +  +
Sbjct: 401 QQSYIESVTTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVI 460

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                G +   +P+  ++  + TV+L SG T++++G  +   +  K+G+      P    
Sbjct: 461 ENYESGGSKAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFG 516

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           L   S          +  TP ++
Sbjct: 517 LGGGSTVKTATPFSVVLITPNII 539


>gi|161789259|ref|YP_001595645.1| hypothetical protein BMSA_0058 [Vibrio sp. 23023]
 gi|161761384|gb|ABX77030.1| Hypothetical protein BMSA_0058 [Vibrio sp. 23023]
          Length = 503

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 108/323 (33%), Gaps = 29/323 (8%)

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           +   ++ +  DIA     + +    +    E         G    + + Q    LS   +
Sbjct: 192 VAYKNVDVVSDIATGIRAILKADPKNGPDTETTKT----TGDSSLVGEVQVIPSLSSISV 247

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPS 227
             +          + ++N        QV L + + E R ++  + G   ++  +++ G  
Sbjct: 248 RTTPERM---RKVESLVNRYQRELSKQVLLNIQVLEFRSNLGHEKGIDWNVVRNTAHGAL 304

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
           + F        +  G   + KGV       + +  LE+   + T    T   ++ Q A  
Sbjct: 305 QFFIPGTNTVSLDAGYGLAFKGVGQWNGTNSFIKVLEKQGTVSTKTPVTALVLNNQPARI 364

Query: 288 TSGGQHLY----KTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEP- 339
           +      Y     + SS    +S  T D    GV +  TP V     + LRI  ++++  
Sbjct: 365 SQTLTKPYLSNISSESSEGVVSSSVTRDKQTEGVDMMVTPNV-KNQFVWLRISGKLTKIA 423

Query: 340 ---VIGVNAGDMPSYRVRKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                 VN   +     R++  T    L  G T V+  + +      +     LS    L
Sbjct: 424 SDHTEDVNNIKLRFLDTRESQITFTNKLRYGQTYVIGSVKQTSTTAERNESFWLS---WL 480

Query: 395 GALFRNSRFNREETEIFIAATPF 417
           G +        +  E  +  TP 
Sbjct: 481 GGM----GSKVDTVETLVLLTPT 499


>gi|240142427|ref|YP_002966937.1| putative type IVB pilus formation outer membrane protein
           [Methylobacterium extorquens AM1]
 gi|240012371|gb|ACS43596.1| putative type IVB pilus formation outer membrane protein
           [Methylobacterium extorquens AM1]
          Length = 601

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 86/278 (30%), Gaps = 45/278 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-----------------TGSSS 224
           ++  +++      QV L + +  V  +         +                    ++S
Sbjct: 318 QEYADVMRKRMNGQVALSIQVLNVSLEDADSFDNNVAALFLGSNKGAFALGRRSPGFNAS 377

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
            P  S   +      S G    +       + +  + AL     +  +   +LT ++G  
Sbjct: 378 DPRSSTIGNLNSATPSLGYAI-LDPTSPFANTQGAISALAERGNVSVVTSASLTTVNGSP 436

Query: 285 ASFTSGGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
                  +  +    ++T  T              T   G  L   P ++  G + L+  
Sbjct: 437 VPLQVVNKRNFVKNVTNTQGTGLSTGVASTTIQTDTVSTGFNLQMVPRIMQDGNVLLQYG 496

Query: 334 TEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             +SE V          +  +   +P+   R       +P+  T+VLAG         ++
Sbjct: 497 MNISELVGREDGFDTFTVNGSTVQLPNVNQRNFVQQSIVPNRSTLVLAGFETARSTSSQQ 556

Query: 384 GIPLLSKIPILGALFRNSRFNREETE-IFIAATPFLVK 420
           G+      P    L    R ++   E + I  TP L+ 
Sbjct: 557 GV---GD-PR-NWLLSGGRTSKNRREVVVILITPTLLD 589


>gi|38201735|ref|NP_938102.1| PilN [Serratia entomophila]
 gi|38176558|gb|AAR13124.1| PilN [Serratia entomophila]
          Length = 544

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 88/288 (30%), Gaps = 36/288 (12%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L   V T+ D+ R +E    +L                 N LN     QV L V +  V 
Sbjct: 277 LSAGVLTVTDTPRVLEQIGRYLDDRN-------------NELN----RQVVLNVQVYSVE 319

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +    Q G   +   +S     S    F G                    +  + AL   
Sbjct: 320 KRTQDQYGIDWNAVFNSGSIGLSLTNAFSGAASDALNGGVSILDGKGAGTKAFIKALSEQ 379

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318
             +  + E +    +  +       Q  Y +  ++    +V        +T   G  +  
Sbjct: 380 ANVSVMTEASSMTTNLSAVPIQVALQQDYASSVTTENTANVGSSSSITKSTITTGFNMTV 439

Query: 319 TPTVLSPG-------RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            P ++           I +     +        + ++   R++     V + SG T+VL+
Sbjct: 440 LPFLMPKSPKMQLQFAINMSDDPTMRTFTSEKTSVELMKTRLKTFTQRVIMQSGQTLVLS 499

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G    +     +G+         G L   ++    +T + I  TP ++
Sbjct: 500 GYQSLNNTANHQGV---GSFRFFG-LGGGAKGENNKTMLVILITPVIL 543


>gi|329905867|ref|ZP_08274251.1| Lipoprotein [Oxalobacteraceae bacterium IMCC9480]
 gi|327547462|gb|EGF32282.1| Lipoprotein [Oxalobacteraceae bacterium IMCC9480]
          Length = 243

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 74/240 (30%), Gaps = 20/240 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV + VT+  V        G Q      +       +        +     ++     
Sbjct: 2   SRQVMVNVTVLAVTLTRGDNYGIQWDAVYQTLSRKYGLSNSLAKVANTNAFSAAILDTAT 61

Query: 253 R--FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--- 307
                   ++ AL     +R     ++  ++ Q        Q  Y   S +T   +V   
Sbjct: 62  SKLAGSAMMIEALSEQGRVRRETSASVVTLNNQPVPVQVAKQTSYLKSSQTTQVPNVGST 121

Query: 308 -----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKA 356
                 T   G  +   P VL+ G + L+  T++S             + + P    R  
Sbjct: 122 TTLTPGTITTGFNMSILPNVLNNGTVLLQFSTDISSLRSLRTVSSSTASIETPETETRNF 181

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              V + S  T++++G  + D    ++G+      P    L  +      +  I I  TP
Sbjct: 182 LQRVAMKSNETLIISGFEQTDDNLTQQGV----GTPANLLLGGSLGAGSNKEIIVIMITP 237


>gi|144897438|emb|CAM74302.1| conserved hypothetical protein, secreted [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 138

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 40/87 (45%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            A ++    V   +   + +G  +   +     V  V++ DP  ADV V S   + LFGK
Sbjct: 7   AAVILTAFAVSSARADTLELGAGQSRRVDAGRGVAQVVIGDPKVADVSVDSAGRIQLFGK 66

Query: 93  NVGQANVILIGHDGKQMLNLDILIERD 119
             G  ++ ++G +G  +L+  +++   
Sbjct: 67  RAGSTSLTVLGRNGAVLLDHTVVVRAG 93


>gi|23016187|ref|ZP_00055946.1| COG0304: 3-oxoacyl-(acyl-carrier-protein) synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 142

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 41/83 (49%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           AA++  +       + + + L   I+L +   V+ V+V +P  ADV V  P ++ +FGK 
Sbjct: 10  AALVWAAPQAAQASEALELPLGGAIVLPMRGGVRTVVVGNPAIADVSVDGPGSVTVFGKG 69

Query: 94  VGQANVILIGHDGKQMLNLDILI 116
            G  +++ +   G  +    +++
Sbjct: 70  PGATSLVALDAGGGVLAERQVVV 92


>gi|325107410|ref|YP_004268478.1| type II and III secretion system protein [Planctomyces brasiliensis
            DSM 5305]
 gi|324967678|gb|ADY58456.1| type II and III secretion system protein [Planctomyces brasiliensis
            DSM 5305]
          Length = 1546

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 356  ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
              T V +P GGT++L G+ +    +   G+P+L+KIP +  LF+N+   RE   + +  T
Sbjct: 1469 VQTVVSVPDGGTVLLGGVKRLREGRNMAGVPILNKIPYVSRLFKNTGVGRETESLMLMVT 1528

Query: 416  PFLV 419
            P ++
Sbjct: 1529 PRII 1532



 Score = 40.4 bits (93), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 8/123 (6%)

Query: 226  PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
             S        G F  E G      VL        + A +       +  P +T  +GQ A
Sbjct: 1242 GSFQVGVPDFGNFNPEVGIQVGFAVLSDIEAFFFIQAAQADERSNIMFAPKVTLFNGQIA 1301

Query: 286  SFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVS 337
            S     Q  +    + + +         ++    GV L     + +  R + L +    +
Sbjct: 1302 SVNDQVQRPFVISVTPSVSVFNVGFQPQISFISEGVSLTVQAVISADRRYVRLSVLPTFT 1361

Query: 338  EPV 340
               
Sbjct: 1362 NIT 1364


>gi|153008055|ref|YP_001369270.1| hypothetical protein Oant_0719 [Ochrobactrum anthropi ATCC 49188]
 gi|151559943|gb|ABS13441.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
          Length = 139

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 45/81 (55%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I++  ++  IL++      V++ +P+ AD VV   +T+ L GK+ G  N++++   G+ +
Sbjct: 36  IALETSQARILRLARPADSVVIGNPSIADAVVQDAQTIVLTGKDFGVTNIVVMDKQGEPI 95

Query: 110 LNLDILIERDIAHLEMTLRRF 130
           L+ ++++ R+        R+ 
Sbjct: 96  LDRELVVSRNARGTTRIYRQA 116


>gi|269123031|ref|YP_003305608.1| Type II secretory pathway component PulD-like protein
           [Streptobacillus moniliformis DSM 12112]
 gi|268314357|gb|ACZ00731.1| Type II secretory pathway component PulD-like protein
           [Streptobacillus moniliformis DSM 12112]
          Length = 312

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 92/299 (30%), Gaps = 50/299 (16%)

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           E  + +      +++  V D  +L G      + +   +L     S     +        
Sbjct: 59  ENEILKLDGSFGVKIRKVGDKYILSG------EKKNISKLKHIIYSIDKIKKQIIIKMNV 112

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           +   ++      + LK    E  ++                            KF+    
Sbjct: 113 IDTSISFFDRFGLNLK---LEENKND-----------------------GLVAKFLENKL 146

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             S    L        + AL+++  +   + P++  +         G   +   +S    
Sbjct: 147 SLSNLLNLGGAKLGLDIEALKQSGDMYIKSFPSIMVLDNSE-----GEMRITDELSFKVS 201

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              V T + G++    P +++ G    + L I +E+S                   +T V
Sbjct: 202 EKKVQTSEAGLIFKIKPRIVTKGYKEFVELEIYSEISSFKSEK------VRSKNILNTKV 255

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L    +  ++G+ ++         P    IPI   LFR    N+E+  I++     ++
Sbjct: 256 LLKDKTSTFISGVGRESKSINISN-P---SIPIFSTLFRKKSKNKEKRNIYVEVEVEIL 310


>gi|260461953|ref|ZP_05810198.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259032200|gb|EEW33466.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 141

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 40/81 (49%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           V    G  I + +N+  I+++      ++V +P+ AD  V    T+ L GK  G  N+++
Sbjct: 21  VPARAGTGIEVTMNQAKIVKLSRPADTIVVGNPSIADASVQDASTIVLTGKGFGVTNLVV 80

Query: 102 IGHDGKQMLNLDILIERDIAH 122
           +  +G  +++  + + R  A 
Sbjct: 81  LDQEGSPIVDAQVTVVRQAAS 101


>gi|295690803|ref|YP_003594496.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC
           21756]
 gi|295432706|gb|ADG11878.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC
           21756]
          Length = 132

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 41/80 (51%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           N+      +   + +   + I L +   ++DV+V DP  ADV + + RT+ + GK  G  
Sbjct: 16  NVDAAAQSRPAALPLATGQAISLSLGGAMRDVVVGDPEVADVSIVNERTLVVLGKRPGVT 75

Query: 98  NVILIGHDGKQMLNLDILIE 117
           N+++ G  G+ + +  +++ 
Sbjct: 76  NLLVFGAGGRALTDRQLIVS 95


>gi|296120909|ref|YP_003628687.1| hypothetical protein Plim_0641 [Planctomyces limnophilus DSM 3776]
 gi|296013249|gb|ADG66488.1| hypothetical protein Plim_0641 [Planctomyces limnophilus DSM 3776]
          Length = 1566

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%)

Query: 348  MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            +P        TTV +P GGT++L G+ +    +   G+P+L+KIP +  LF+NS   RE 
Sbjct: 1481 LPVVEQVTVLTTVSVPDGGTVLLGGVKRLREGRNMAGVPILNKIPYVSRLFKNSGVGRET 1540

Query: 408  TEIFIAATPFLV 419
              + +  TP +V
Sbjct: 1541 ESLMLMVTPRIV 1552



 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 23/158 (14%)

Query: 206  RRDILKQIGFQHSITGSSSGPSKSFAADFG---------------GKFVSEGGDFSVKGV 250
             R+  ++  +Q   T    G   SF  D                 G F    G  +   +
Sbjct: 1232 TRNTTQRSSYQKGGTIVGLGSQNSFTPDLDIPFRQGSFDIGVPDFGGFDPTAGITTGLAI 1291

Query: 251  LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----- 305
            L        + A +  +    L  P LT  +GQ+A+ +      + T  ++T        
Sbjct: 1292 LSDLEAFFFIQAAQGDSRSNLLFAPKLTLFNGQTATVSDTVNRFFVTGYNTTVGVGAAIQ 1351

Query: 306  --SVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPV 340
               +     GV L  T  + +  R + L I    +   
Sbjct: 1352 TPQIQQFPEGVSLTVTAVISADRRYVRLTIIPNFTSIT 1389


>gi|218506995|ref|ZP_03504873.1| pilus subunit transmembrane protein [Rhizobium etli Brasil 5]
          Length = 151

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + ++   +L++   V  V+V +   AD  V   +T+ L G++ G  N++L+  DG  +
Sbjct: 31  LRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 90

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
           L+  IL+  D              + +RV   ++  VL       Q +Q+A +
Sbjct: 91  LDERILVSID------------EGNTVRVYRQTERSVLSCTPNCEQHAQQAAD 131


>gi|190889877|ref|YP_001976419.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652]
 gi|190695156|gb|ACE89241.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652]
          Length = 136

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + ++   +L++   V  V+V +   AD  V   +T+ L G++ G  N++L+  DG  +
Sbjct: 31  LRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 90

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
           L+  IL+  D              + +RV   ++  VL       Q +Q+A +
Sbjct: 91  LDERILVSID------------EGNTVRVYRQTERSVLSCTPNCEQHAQQAAD 131


>gi|327194698|gb|EGE61544.1| pilus subunit transmembrane protein [Rhizobium etli CNPAF512]
          Length = 136

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + ++   +L++   V  V+V +   AD  V   +T+ L G++ G  N++L+  DG  +
Sbjct: 31  LRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 90

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
           L+  IL+  D              + +RV   ++  VL       Q +Q+A +
Sbjct: 91  LDERILVSID------------EGNTVRVYRQTERSVLSCTPNCEQHAQQAAD 131


>gi|87120224|ref|ZP_01076119.1| general secretion pathway protein (PilQ) [Marinomonas sp. MED121]
 gi|86164327|gb|EAQ65597.1| general secretion pathway protein (PilQ) [Marinomonas sp. MED121]
          Length = 57

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G T+ L GL+ ++ +Q + G+P+L  +P +G LFR+      + E+ +     ++
Sbjct: 2   DGETMALGGLVSEETRQSESGVPMLKDLPFIGRLFRSESKETVQRELTVLIKTQIL 57


>gi|308094756|ref|ZP_07663037.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AN-5034]
 gi|308089670|gb|EFO39365.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AN-5034]
          Length = 449

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 34/162 (20%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  +    + ++G +   T  +   +              
Sbjct: 288 REIIESLDIP-VKQVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 346

Query: 230 -------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAI 269
                                 +      +     F V  +      +  L AL++ +  
Sbjct: 347 YEGGGDGEGEEGGVGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKA 406

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
             ++ P L   + + A    G +  Y   SSS+GATSVT   
Sbjct: 407 EIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKK 447


>gi|290243112|ref|YP_003494782.1| type II and III secretion system protein [Thioalkalivibrio sp.
           K90mix]
 gi|288945617|gb|ADC73315.1| type II and III secretion system protein [Thioalkalivibrio sp.
           K90mix]
          Length = 551

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 83/258 (32%), Gaps = 26/258 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTI--AEVRRDILKQIGFQHSITGSS-----SGPSKSFAADFG 235
             ++ +N     QV++ V I   E   + L+ + +      ++     S P  + + D  
Sbjct: 291 DYVDNMNDTFSRQVSVDVQIYRVEATENELRGVNWNALFNNNNMEFEVSSPGGNASGDVS 350

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              V          + +    E  + +LE    +  +   TL  ++ Q A    G    Y
Sbjct: 351 PGGVRLSVPDGAGTLSNLVGSEGFIASLEEIGDVSEVTSTTLQTVNNQPAPVRIGQTVSY 410

Query: 296 KTVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPV 340
               S T   +V +         D G  +   P V   GR       I L     + E  
Sbjct: 411 LEEVSQTDTANVGSQASLTPGEVDVGFSMQLLPHVQDNGRDMLMQVMITLSTLDRLEEFS 470

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            G     +P    R       L SG  +VLAG         + GI + +    LG    N
Sbjct: 471 SGDQTIQLPEVSSRDFVQRTWLQSGEALVLAGFESIQANLARSGI-IDADKWALG---GN 526

Query: 401 SRFNREETEIFIAATPFL 418
            R       + I  TP +
Sbjct: 527 RRAENTRESLIIVMTPTV 544


>gi|150377244|ref|YP_001313839.1| hypothetical protein Smed_5129 [Sinorhizobium medicae WSM419]
 gi|150031791|gb|ABR63906.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 170

 Score = 70.8 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 44/111 (39%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
              L  +  ++       E  + V+ +    +G      + ++    + +P     V++ 
Sbjct: 7   GAVLLLAMSALVSPATADEQKSPVVPVQQKSVGADGVERLVVDFAKTVTLPRPASTVIIG 66

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           +   A   +   RT+ L GK  G  N+I+I  DG ++ NL + +      L
Sbjct: 67  NTGIAQASLSDDRTVILTGKTPGSTNLIVIDRDGAEVANLILDVVAGSGRL 117


>gi|310765409|gb|ADP10359.1| hypothetical protein EJP617_06780 [Erwinia sp. Ejp617]
          Length = 559

 Score = 70.8 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 78/252 (30%), Gaps = 29/252 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAADFGGKFVSEGG----DF 245
             QV L + I  V +   +Q+G    +   S    G S + +        +  G    D 
Sbjct: 313 SRQVQLNIQIVSVSQSRNEQLGLDWGLIYRSLNNYGASLTGSMASASSSAASAGISILDT 372

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAE---------PTLTAISGQSASFTSGGQHLYK 296
           +            ++ AL     +              P    +S Q     S       
Sbjct: 373 ATGNAAKFSGSSMLIKALSEQGNVSMALNQTDPTANLIPVAYQLSNQKG-ILSSSSSTAT 431

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI--------QTEVSEPVIGVNAGDM 348
                T   + TT   G+ +   P +   G + L+         Q E      G    D+
Sbjct: 432 ANVGVTSTMTTTTITTGLFMTMLPFIQENGDVQLQFAFSYTSPPQIEKFISADGNTRNDL 491

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+         V L SG T+VL G  + ++   K+G        I+G         R  T
Sbjct: 492 PTTSTEGLTRKVNLRSGQTLVLTGSEQQNVSTDKQGTFTPGNF-IMG---GGQAGTRGRT 547

Query: 409 EIFIAATPFLVK 420
            + I  TP L++
Sbjct: 548 TLVIMITPVLLR 559


>gi|323970458|gb|EGB65719.1| R64 PilN family protein type IVB pilus formation outer membrane
           protein [Escherichia coli TA007]
          Length = 336

 Score = 70.8 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 97/276 (35%), Gaps = 28/276 (10%)

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
           L+  FL+ +   +  ++ S+ V    N     QV L V +  VR+    Q G   +   S
Sbjct: 70  LATGFLTVTDTPRVLDTVSRFV-EARNREMRRQVVLNVEVLSVRKTRRDQAGIDWNAVFS 128

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHALERATAIRTLAEPTLT 278
                       GG F S   D    GV          +  L AL     +  + + +  
Sbjct: 129 DG----RLGLTLGGAFSSAADDIITSGVSIVDGKLTGSKAFLKALSSQGTVSVVTQNSAV 184

Query: 279 AISGQSASFTS----GGQHLYKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGR--- 327
             +            G      T +++   TS +    T   G  +   P +    R   
Sbjct: 185 TKNMTPVPMQVASQQGYIESVTTDTTANVGTSTSLNAATITTGFNMTLLPFIQPDARSLQ 244

Query: 328 ----IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
               + L  +        G +   +P+  ++  + T++L SG T++L+G  +   + +++
Sbjct: 245 LLFSMNLSDKPTFEVFESGGSRAQVPTVDLKTINQTIDLKSGQTVILSGFRQSGSKSVRQ 304

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+         G L   +    ++T + +  TP ++
Sbjct: 305 GV---GSPAFFG-LGGGTDSGDDDTILVVLITPHVI 336


>gi|218671456|ref|ZP_03521126.1| pilus subunit transmembrane protein [Rhizobium etli GR56]
          Length = 135

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + ++   +L++   V  V+V +   AD  V   +T+ L G++ G  N++L+  DG  +
Sbjct: 31  LRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 90

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           L+  IL+  D              + +RV   ++  VL       Q +Q+A 
Sbjct: 91  LDERILVSID------------EGNTVRVYRQTERSVLSCTPNCEQHAQQAA 130


>gi|238899395|ref|YP_002925078.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229467157|gb|ACQ68930.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 560

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 94/265 (35%), Gaps = 47/265 (17%)

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGD 244
           NI    QV LKV +  V  +   Q G   ++   S     G   + A + G    + G +
Sbjct: 307 NIKLSKQVLLKVVVYTVHTETADQSGIDWNVIFKSLSGKYGIHVANAFNAGSNLANGGFE 366

Query: 245 FSVKGVLDRFSFET---VLHALERA---TAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
                      +     +L AL      + ++TL+   +   +  +A    G Q  Y   
Sbjct: 367 ILPTATGRASQWAGSQFLLKALSEQVKVSDVKTLS---IMTTNLATAGMQIGKQTTYLRK 423

Query: 296 ---KTVSSSTGATSVTTHD-----YGVVLHFTPTVLS-PGRIGLRIQTEVS--------E 338
               T +++TGA  V + +      G  ++  P +L    ++ L +  ++S        E
Sbjct: 424 TSVTTGNTTTGAEPVQSLEPGEITTGTNINIMPKILEGNDKMMLTMMMDISSLNRLRRIE 483

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-- 396
                 + + P    R     V L  G T++++G  ++     + G+         G+  
Sbjct: 484 NRNKTESIEAPDTDSRSIPQRVWLKPGETVLMSGFEQNIQDGSQRGV---------GSSR 534

Query: 397 --LFRNSRFNREETE-IFIAATPFL 418
             LF      + + E   I  TP L
Sbjct: 535 HFLFGGGMSGKSKKESFVITITPLL 559


>gi|319785612|ref|YP_004145088.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171500|gb|ADV15038.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 140

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 38/77 (49%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
            G  I + +N+  I+++      ++V +P  AD  V    T+ L GK  G  N++++  D
Sbjct: 25  AGAGIEVTMNQAKIVKLSRPADTIVVGNPAIADASVQDASTIVLTGKGFGVTNLVVLDTD 84

Query: 106 GKQMLNLDILIERDIAH 122
           G  +++  + + R  A 
Sbjct: 85  GSPIVDEQVTVVRQAAS 101


>gi|327413080|emb|CAX68109.1| putative pilus assembly protein [Salmonella enterica subsp.
           enterica]
          Length = 562

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 80/250 (32%), Gaps = 29/250 (11%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAADFGGKFVSEGG----DFS 246
            Q+ L V I  V +   +++G    +  SS    G S   + +      + G     D +
Sbjct: 317 RQIQLDVKIMSVTQTRNEELGLDWDLVYSSLRNYGVSVKGSFNNASSGAASGAYSILDTA 376

Query: 247 VKGVLDRFSFETVLHALERATAIRTL-AEPTLTA--------ISGQSASFTSGGQHLYKT 297
                       ++ AL     +  + ++   T         +S Q     S        
Sbjct: 377 TGSARHFAGSNLIMKALSEQGDVSVVTSQSRATTNLTPVPYQLSNQQGILVSSSSTPTAN 436

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--------VIGVNAGDMP 349
           V   T   S +    G+ +   P +   G + L+       P          G    D P
Sbjct: 437 V-GVTSTMSTSMLTTGLFMTAVPYIEENGNVQLQFAFSYDSPPKIESFFSADGNTRNDTP 495

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +Y        V + +G T++L G  +  +   ++G    +   + G      +   + T 
Sbjct: 496 NYSREAFTQKVNMKAGQTLMLTGSDQLSVSADRQGT-GSADNFLFG---GGRKGTNKRTT 551

Query: 410 IFIAATPFLV 419
           + I  TP L+
Sbjct: 552 LIILITPILM 561


>gi|218461610|ref|ZP_03501701.1| pilus subunit transmembrane protein [Rhizobium etli Kim 5]
          Length = 124

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + ++   +L++   V  V+V +   AD  V   +T+ L G++ G  N++L+  DG  +
Sbjct: 19  LRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 78

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           L+  IL+  D              + +RV   ++  VL       Q +Q+A 
Sbjct: 79  LDERILVSID------------EGNTVRVYRQTERSVLSCTPNCEQHAQQAA 118


>gi|189017140|ref|YP_001909457.1| Lipoprotein [Erwinia tasmaniensis Et1/99]
 gi|188027077|emb|CAO94861.1| Lipoprotein [Erwinia tasmaniensis Et1/99]
          Length = 568

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 85/251 (33%), Gaps = 29/251 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAADFGGKFVSEGG------DF 245
             QV LKV I  V  D+   +G   S+   + +G      A  GG  V  G       D 
Sbjct: 321 SRQVNLKVVIYTVNSDVSDAVGLDWSVIYKTLAGKYGINLAGPGGSIVDAGSLSFSVLDT 380

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH---------LYK 296
           +            +  AL +   +  +    L   +  SAS   G Q          +Y 
Sbjct: 381 ATGSARQFAGSSFLFDALSKQAKVADVRTIPLMTSNMASASVVVGRQIAYLKSVATTVYS 440

Query: 297 TVSSSTGATSVTTHDY--GVVLHFTPTVLSPG-RIGLRIQTEVS------EPVIGVNAGD 347
           T +S+  + ++T      G  +   P VL  G R+ L +   +S      +        +
Sbjct: 441 TGNSTLPSQTLTPGSVTTGTNITIFPKVLDGGDRMMLNMFLNISSLIQLRQISSDTEKLE 500

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P    R     V L  G T+V++GL ++     KEG+       + G            
Sbjct: 501 APEVDSRSVPQRVWLKPGQTVVISGLEQNVTNVNKEGM-FSPDNIVTG---GKRSGGSIR 556

Query: 408 TEIFIAATPFL 418
               I  TPF+
Sbjct: 557 QSFVITVTPFI 567


>gi|222084464|ref|YP_002542993.1| hypothetical protein Arad_0357 [Agrobacterium radiobacter K84]
 gi|221721912|gb|ACM25068.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 139

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 45/101 (44%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
              A  A +            + + ++   +L++   V  V+V +   AD  V  P+T+ 
Sbjct: 11  AGVAAMAGLMPQLSRAADDGMLRVYMDHARVLKLDRPVSKVIVGNAQVADATVADPKTIV 70

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
           L G++ G  N++L+  DG  +++  IL+  D  +     R+
Sbjct: 71  LTGRSFGTTNIVLLDADGNAIVDERILVSIDEGNTVRVFRQ 111


>gi|209551755|ref|YP_002283672.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537511|gb|ACI57446.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 136

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + ++   +L++   V  V+V +   AD  V   +T+ L G++ G  N++L+  DG  +
Sbjct: 31  LRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 90

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           L+  IL+  D              + +RV   ++  VL       Q +Q+A 
Sbjct: 91  LDERILVSID------------EGNTVRVYRQTERSVLSCTPNCEQHAQQAA 130


>gi|304320642|ref|YP_003854285.1| hypothetical protein PB2503_05347 [Parvularcula bermudensis
           HTCC2503]
 gi|303299544|gb|ADM09143.1| hypothetical protein PB2503_05347 [Parvularcula bermudensis
           HTCC2503]
          Length = 178

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 58/156 (37%), Gaps = 2/156 (1%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A +   +     +  ++ + LN     +    +  ++V +P  ADV V +   + LFGK 
Sbjct: 8   AVIAATALAPTAQAGEMWLTLNDARFHETAKPISSIVVGNPAIADVTVRTKTNIILFGKM 67

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G   + L    G+ +  L + +     ++ +TL+            V + +   G    
Sbjct: 68  PGATTITLFDARGEVIDRLALKVRNASNNV-VTLQAGENRYTFSCTTVCEQIPAIGDGSN 126

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
              ++ A  ++E       R    ++ S  V+  L 
Sbjct: 127 ESRAELA-SVAEQAQQAVTRASAGDNPSNSVVESLE 161


>gi|13474655|ref|NP_106224.1| hypothetical protein mll5591 [Mesorhizobium loti MAFF303099]
 gi|14025410|dbj|BAB52010.1| mll5591 [Mesorhizobium loti MAFF303099]
          Length = 129

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 37/77 (48%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
               I + +N+  I+++      ++V +P  AD  V    T+ L GK  G  N++++  +
Sbjct: 14  AAADIEVTMNQAKIVKLSRPADTIVVGNPAIADASVQDASTIVLTGKGFGVTNLVVLDQE 73

Query: 106 GKQMLNLDILIERDIAH 122
           G  +++  + + R  A 
Sbjct: 74  GSPIVDAQVTVVRQAAS 90


>gi|124514594|gb|EAY56106.1| probable type IV pilus biosynthesis protein [Leptospirillum
           rubarum]
          Length = 610

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 94/296 (31%), Gaps = 33/296 (11%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQS-GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           +   V++I  SQ    ++++  + +            + +  +N +    V LKV + +V
Sbjct: 322 ISQSVKSILGSQGNFSIAQSAGTITVTTTPRIMGEVARYVREINDSLSRHVWLKVEVLDV 381

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---VLDRFSFETVLHA 262
             +      F  +        S S A        S  G   +      L   S   V+HA
Sbjct: 382 SLENQNTNSFNLTAALHGLMKSGSLAVTGQPGVFSLAGATPITTSTLTLPSSSTNAVIHA 441

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGATSVT-----THDYG 313
           L     +  +    +T ++ Q+    +     Y   +    +  G ++ T     T   G
Sbjct: 442 LSTQGKVSVVTRSFVTTLNDQAVPVQNVQNIGYLMENLAGIAGIGQSTFTQNIPGTVTVG 501

Query: 314 VVLHFTPTVLSPGRIGLRIQTE----VSEPVIGVNAGDM--PSYRVRKADTTVELPSGGT 367
             +   P +L    + L +  +         +  N G +  P+   R     V+L SG T
Sbjct: 502 FTMTLVPHLLDDKEMLLGVSIDDTNLNQMQTLQSNGGSIQLPNTSQRSFMQWVKLTSGET 561

Query: 368 IVLAGLLKDDI--QQLKEGIP---LLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V+ G  +     QQ   G P    +                     I I  TP +
Sbjct: 562 AVIGGYEQTRRVFQQNGTGTPSNFWMG---------GGQNAETVRDAIVILVTPVV 608


>gi|331660223|ref|ZP_08361158.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli TA206]
 gi|331052490|gb|EGI24526.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli TA206]
          Length = 548

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 94/294 (31%), Gaps = 40/294 (13%)

Query: 158 QRAVELSETFLSQSGRNQYANSS-------SKKVMNLL-------NIAGEDQVTLKVTIA 203
                     LS  G +  A  S       + +V+N +       N   + QV LKV + 
Sbjct: 260 DDIKATVSAMLSAEGSSWLAPGSATLTVTDTPEVLNRIGEYIERQNAILDRQVKLKVDVY 319

Query: 204 EVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
            +     KQIG   +   S++ G   +  + FG                     E ++ A
Sbjct: 320 RITFRDTKQIGIDWTAVYSAARGMGYTLTSAFGDAASDVATIGVTSSSGRLSGSEVLIKA 379

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD-------YGVV 315
           L +   I +         +   A      +  Y   +S+T + S ++ +        G+ 
Sbjct: 380 LNQQANISSATTTNTVTTNMVPAPLQIAKETTYLAKTSTTTSDSYSSTELEPGTITTGLF 439

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGT 367
           +   P +   G I L++   +S+           G  +   P+  VR       L  G T
Sbjct: 440 MTVLPYIRDNGTIQLQMSFSLSDDPTITTVSAKDGSTSIQTPTTDVRSLTQRANLKPGQT 499

Query: 368 IVLAG---LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +VL G   L  +  +Q              G         R+ + + +  TP L
Sbjct: 500 LVLNGFQSLYNEANRQGTTSKSWFG----FG---GGESAERDRSMLLVLVTPVL 546


>gi|153878167|ref|ZP_02004504.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152065369|gb|EDN65496.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 93

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFL 418
           + +  G  IV+ GL++ + Q  K+GIP L   P++G+ LF ++  N + TE+ +   P +
Sbjct: 1   MVVRDGTAIVIGGLIQVNNQDDKQGIPGLQDFPLIGSILFSSTSNNDKHTELVLIIIPEV 60

Query: 419 VKPVA 423
           V P A
Sbjct: 61  VNPAA 65


>gi|315497470|ref|YP_004086274.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48]
 gi|315415482|gb|ADU12123.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48]
          Length = 141

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 44/103 (42%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A    +S        KI +  N    + +P     V+V +P  ADV V   RT+Y+ G+ 
Sbjct: 12  ALTALLSAGAAEAASKIVVEKNHSTRVVLPASAGSVIVGNPEVADVTVVDSRTIYIMGRG 71

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
            G+++V +    G+ + + D+++   +       +     + I
Sbjct: 72  FGRSSVSVTDSAGRNIFDADVMVGTPVEGGVTVYKGLKPSTMI 114


>gi|329847248|ref|ZP_08262276.1| outer membrane channel protein [Asticcacaulis biprosthecum C19]
 gi|328842311|gb|EGF91880.1| outer membrane channel protein [Asticcacaulis biprosthecum C19]
          Length = 158

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 22/136 (16%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M +  R   ++ +  L ++ P++A                      G+ +++  N  + +
Sbjct: 1   MTFSIRAALSVTAFGLMAAVPALA----------------------GQPVTVEKNHTLRV 38

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +      V+V +P  ADV V   RT+Y+ GK  G + V + G DG+ + + ++ +    
Sbjct: 39  TLVAPAGTVVVGNPDIADVTVVDSRTLYIVGKGFGSSAVNVAGRDGRSLFDGEVTVTAPK 98

Query: 121 AHLEMTLRRFIADSNI 136
                  +       +
Sbjct: 99  RGAITVYKGLKPSLMV 114


>gi|110636420|ref|YP_676628.1| hypothetical protein Meso_4096 [Mesorhizobium sp. BNC1]
 gi|110287404|gb|ABG65463.1| conserved hypothetical protein [Chelativorans sp. BNC1]
          Length = 137

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 38/71 (53%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I I +N+  I+++      V++ +P  AD VV   +T+ L GK  G  N++ +  +G+ +
Sbjct: 28  IGIVMNQAKIIKLVRPADTVVIGNPEIADAVVQDAQTIVLTGKGFGVTNIVALDVEGRPI 87

Query: 110 LNLDILIERDI 120
           ++  + + R  
Sbjct: 88  MDEQVRVSRQT 98


>gi|238755356|ref|ZP_04616698.1| hypothetical protein yruck0001_7710 [Yersinia ruckeri ATCC 29473]
 gi|238706391|gb|EEP98766.1| hypothetical protein yruck0001_7710 [Yersinia ruckeri ATCC 29473]
          Length = 540

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 84/252 (33%), Gaps = 19/252 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           + +N  N+    QV L V +  V +    Q+G       +S     S    F G   +  
Sbjct: 292 RYINERNVELNRQVVLNVQVYSVEKRTQDQLGIDLDAVFNSGSVGLSLTNAFTGSASNVL 351

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                         +  + AL     +  + E +    +  +       Q  Y +  S+ 
Sbjct: 352 SGGVSILDGKGKGSKGFIKALSEQANVSVMTEASSMTTNLSAVPIQVALQQDYASGVSTQ 411

Query: 303 GATSV--------TTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP------VIGVNAGD 347
              +V        +T   G  +   P ++    ++ L+    +S+         G  + +
Sbjct: 412 NTANVGSTSTITKSTITTGFNMTVLPFLVPQSPKMQLQFAINISDDPTMRTFSSGDTSVE 471

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +   R++     V + SG T+VL+G         ++G+         G L   +     +
Sbjct: 472 LTKTRLKTFTQRVNMQSGQTLVLSGYQSLGKTVDRQGV---GSFRFWG-LGGGANGENNK 527

Query: 408 TEIFIAATPFLV 419
           T + I  TP ++
Sbjct: 528 TMLVILITPVIL 539


>gi|218691155|ref|YP_002399367.1| putative type IV pilus outer membrane secretin lipoprotein
           [Escherichia coli ED1a]
 gi|218428719|emb|CAR09511.1| putative type IV pilus outer membrane secretin lipoprotein
           [Escherichia coli ED1a]
          Length = 533

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 94/294 (31%), Gaps = 40/294 (13%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
             +VL     T+ D+ + ++  + F+ +  R                     QV L + I
Sbjct: 263 GRMVLSTGFLTVTDTPQVLDTVKNFMEERNREM-----------------RRQVVLNIEI 305

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--VSEGGDFSVKGVLDRFSFETVL 260
             +++   +Q G   +   S         + F      V   G   + G L     +  L
Sbjct: 306 LSIKKTSKEQAGIDWNAVFSDGHLGIDLTSAFTNAADEVVTSGVSIIDGKLTGS--KAFL 363

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDY 312
            AL     +  + + +    +          Q  Y    ++    +V         T   
Sbjct: 364 KALSSQGKVSVVTQNSAVTKNLTPVPMQVASQQGYIESVTTDTTANVGSSTSLNAATITT 423

Query: 313 GVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           G  +   P +            + L  +        G +    PS  ++  + T++L S 
Sbjct: 424 GFNMTLLPFIQPGSHRLQLLFSMSLSDKPVFEVFESGGSRAQTPSVELKTINQTIDLKSD 483

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L+G  +   + L++G+         G L        ++T + +  TP ++
Sbjct: 484 QTVILSGFQQFSRKSLRQGV---GTPSFFG-LGGGVDSADDDTILVVLITPHVI 533


>gi|328545283|ref|YP_004305392.1| Possible pilus assembly protein (CpaC) [polymorphum gilvum
           SL003B-26A1]
 gi|326415025|gb|ADZ72088.1| Possible pilus assembly protein (CpaC) [Polymorphum gilvum
           SL003B-26A1]
          Length = 157

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
               + + +++ +++  + ++      V+V +P+ ADV +H   T+ + GK  G  N+++
Sbjct: 23  AAAAETEPVAVTVDRAKVFRIEAPADTVIVGNPSIADVTMHDRFTVVVTGKTFGTTNLVI 82

Query: 102 IGHDGKQMLNLDILIER---DIAHLEMTLRRF 130
           +  D + +++  I++     D+  +   L R+
Sbjct: 83  LDKDSQPIIDEVIVVRPPETDVVTVTRNLNRY 114


>gi|154250684|ref|YP_001411508.1| hypothetical protein Plav_0228 [Parvibaculum lavamentivorans DS-1]
 gi|154154634|gb|ABS61851.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
          Length = 172

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 41/82 (50%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
            V   +     + +NK   L +      V+V +P+ ADV V   + +Y+ G++ G+ N+I
Sbjct: 27  AVSASQAADFQVEMNKSKALHLGQPASTVMVGNPSIADVTVEGSKLLYVMGRSYGRTNII 86

Query: 101 LIGHDGKQMLNLDILIERDIAH 122
            +   G+ +L++++ +    A 
Sbjct: 87  ALDSSGETILDINVNVVSQSAS 108


>gi|296444401|ref|ZP_06886366.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
 gi|296258048|gb|EFH05110.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
          Length = 155

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF-GKN 93
           AV+  +     + + + + +++  ++++P   Q +++ +P  ADV +     + +  GK+
Sbjct: 17  AVMGATSRSFAEQRALYVDIDRARVVRMPDGAQTIIIGNPLVADVTMLKANRLLVVTGKS 76

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHL 123
            G  N+IL+   G +++   I +      L
Sbjct: 77  FGTTNLILLDESGGEVVEQTITVTPASDKL 106


>gi|332308903|ref|YP_004436753.1| hypothetical protein Glaag_4580 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332176232|gb|AEE25485.1| hypothetical protein Glaag_4580 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 506

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 86/259 (33%), Gaps = 31/259 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSFAADFGGKFV 239
           +  +   N     QV   + I + + ++  +      +     S+    S   DF G  V
Sbjct: 256 RDAIQAENRKATAQVYFDIKIVDYQDEVGSEYSLNWDVVSKNLSAEGVVSLTNDFSGSLV 315

Query: 240 SEGGDFSVKG----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              G  +V G              + AL+    +  + EP +T  + +     +G    Y
Sbjct: 316 D--GTAAVLGYSKESGKYAGSSAFISALDNQGVVYNVIEPKITLRNNRIGKVINGADTTY 373

Query: 296 KTVSSSTGATSVTTH-------DYGVVLHFTPTVLSP-----GRIGLRIQTEVSEPVIGV 343
              S S   T+ +T          G+ L+    +        G I  +  + V    +  
Sbjct: 374 LASSGSASTTTSSTGILIPGIVSTGLNLYAVANINLDDMSVIGAIANKYASLVDIGSVTS 433

Query: 344 NAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +   +  P    ++      +  G TI+L+GL +  + +    +           LF  +
Sbjct: 434 DDATIQTPETTRKEFHQEFFVRDGETILLSGL-RSRLSEYNSSVAG-------SMLFGGT 485

Query: 402 RFNREE-TEIFIAATPFLV 419
           + + +  T   I  TP ++
Sbjct: 486 KGSADTYTNTVILLTPRII 504


>gi|159184220|ref|NP_353258.2| hypothetical protein Atu0226 [Agrobacterium tumefaciens str. C58]
 gi|159139548|gb|AAK86043.2| PilQ [Agrobacterium tumefaciens str. C58]
          Length = 127

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 40/80 (50%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + +N   +L++   V  V+V +   AD  V    T+ L G++ G  N++L+  +G  +
Sbjct: 22  LRVSMNHARVLRLDRPVSKVIVGNSKVADATVADATTIVLTGRSFGTTNLVLLDAEGNPI 81

Query: 110 LNLDILIERDIAHLEMTLRR 129
           ++  IL+  D  +     R+
Sbjct: 82  VDERILVSIDEGNTVRVFRQ 101


>gi|58038376|ref|YP_190345.1| PilN [Gluconobacter oxydans 621H]
 gi|58000790|gb|AAW59689.1| PilN [Gluconobacter oxydans 621H]
          Length = 571

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 100/297 (33%), Gaps = 40/297 (13%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKV------MNLLNIAGEDQVTLKVTIAEVRR 207
            + +      ++    +         +  +V      ++ L+ +   QV + V +  ++ 
Sbjct: 280 QKTADTIANGAQVIADEGLGTLSVTGNPDQVTRVSDWIHSLSESLMQQVAIDVHVYTLKE 339

Query: 208 DILKQIGFQHSITGSSSGPSKSF-----------AADFGGKFVSEGGDFSVKGVLDRFSF 256
                 GF   I   + G                  D    F +   D +          
Sbjct: 340 THETNYGFSPQIALKNYGKVYGLSMIPAAIPGMQTNDIPFSFGASILDTAKGAAGQFSGS 399

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYG 313
           +  + AL     +  +   +  A +G SA F +G    Y   SS+   + A S  T   G
Sbjct: 400 QLAIQALSELGNVTEMYSRSAVATNGMSAPFQNGINTTYLANSSTVLASNAGSSATLSPG 459

Query: 314 VVL-----HFTPTVLSPGRIGLRI----QTEVSEPVIGVNAGDM--PSYRVRKADTTVEL 362
           VV+       TP ++   RI L I    QT +S      N   +  P       D TV L
Sbjct: 460 VVMSGFMGEITPRIV-DQRILLHINFLLQTLLSIQTFQSNGSSIQEPKTSSTSLDDTVVL 518

Query: 363 PSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            SG T++L+G + D   + + G+  PL      LG          ++T++ +     
Sbjct: 519 RSGSTLMLSGYVDDSSSRDRTGVGSPLF----WLGG--GGGDAQTQKTQVIVTVEAH 569


>gi|255022020|ref|ZP_05294026.1| PilN [Acidithiobacillus caldus ATCC 51756]
 gi|254968506|gb|EET26062.1| PilN [Acidithiobacillus caldus ATCC 51756]
          Length = 544

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 94/301 (31%), Gaps = 35/301 (11%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  + +T+    + V  + T               +  +  L    + QV + V +  V 
Sbjct: 251 LSKVAQTVAGGGQVVVDASTGTVTVTGTPPEVRRVRDWVQGLARQLQRQVAITVHVYNVN 310

Query: 207 RDILKQIGFQHSITGSSSG------------PSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            +  +  G   S    S G            PS S          +     +   +    
Sbjct: 311 LNNEQNYGLNLSGAFQSLGRQYGVTLQGVAPPSVSSGGPAPLSLGANILSSATGALGQWQ 370

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD--- 311
                + AL     +  +   +  +++G+        Q  Y   SS+T   +V T     
Sbjct: 371 GSSIAVQALATLGHVTQVFSRSAISLNGEPTPIQVAQQTGYLAESSNTTTANVGTTSGLI 430

Query: 312 -----YGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTV 360
                 G    F P ++  GRI L +   +S          G ++  +P+        +V
Sbjct: 431 PGTVTTGFTAMFLPKIV-DGRILLGMNMTISNLVGIQTISSGGSSIQVPTVDSSTFQQSV 489

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +L  G T++L G  +        G+  P     P+LG     +  +     I I  T  +
Sbjct: 490 KLKPGQTLLLTGYSQSQGSTTHNGVGSPYF---PLLG---GGADASLSRQMIAIVITARI 543

Query: 419 V 419
           +
Sbjct: 544 L 544


>gi|16263312|ref|NP_436105.1| hypothetical protein SMa1580 [Sinorhizobium meliloti 1021]
 gi|14523991|gb|AAK65517.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 170

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
              L  +  ++ +     E   A+I +     G      + ++    + +P     V++ 
Sbjct: 7   GAVLLLAMSALVRPAAADEQKTAIIPVQQRSTGAKGVERLVVDFAKTVALPRPASTVIIG 66

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           +   A   +   RT+ L GK  G  N+I+I  DG ++ NL + +      L
Sbjct: 67  NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRL 117


>gi|307304369|ref|ZP_07584120.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
 gi|306902571|gb|EFN33165.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
          Length = 170

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
              L  +  ++ +     E   A+I +     G      + ++    + +P     V++ 
Sbjct: 7   GAVLLLAMSALVRPAAADEQKTAIIPVQQRSTGAEGVERLVVDFAKTVALPRPASTVIIG 66

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           +   A   +   RT+ L GK  G  N+I+I  DG ++ NL + +      L
Sbjct: 67  NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRL 117


>gi|220923688|ref|YP_002498990.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060]
 gi|219948295|gb|ACL58687.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060]
          Length = 169

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 20/137 (14%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M+  + T   + ++ L S  P++++                        + + +    IL
Sbjct: 1   MKRFRPTLHGVAAVALASLLPAMSQ--------------------AADTLDLTVGHSQIL 40

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           +    V  + + DP  AD    +  T+ + GK +G  N+I +   G ++L   + +    
Sbjct: 41  RPGKAVGTIAIGDPDIADATTAAGGTILVTGKKIGTTNIIALDETGSEVLASTLRVVPID 100

Query: 121 AHLEMTLRRFIADSNIR 137
              + ++        I 
Sbjct: 101 RRPKYSVDVIKGGQRIE 117


>gi|325291663|ref|YP_004277527.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3]
 gi|325059516|gb|ADY63207.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3]
          Length = 136

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 40/80 (50%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + +N   +L++   V  V+V +   AD  V    T+ L G++ G  N++L+  +G  +
Sbjct: 31  LRVSMNHARVLRLDRPVSKVIVGNSKVADATVADATTIVLTGRSFGTTNLVLLDAEGNPI 90

Query: 110 LNLDILIERDIAHLEMTLRR 129
           ++  IL+  D  +     R+
Sbjct: 91  VDERILVSIDEGNTVRVFRQ 110


>gi|227823967|ref|YP_002827940.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234]
 gi|227342969|gb|ACP27187.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234]
          Length = 141

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 41/80 (51%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           ++      + + + ++   +L++   V  V++ +   AD  V   +T+ L G+N G  N+
Sbjct: 26  AEKTDAAEQMMRVYMDHARVLKLDRPVSKVIIGNSDVADATVADSKTIVLTGRNFGTTNL 85

Query: 100 ILIGHDGKQMLNLDILIERD 119
           +++  DG  +++  IL+  D
Sbjct: 86  VILDQDGNAIVDERILVSID 105


>gi|296100785|ref|YP_003610931.1| type IV pilus formation outer membrane protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055244|gb|ADF59982.1| type IV pilus formation outer membrane protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 557

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 91/287 (31%), Gaps = 34/287 (11%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLL-------NIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           S  F   S     + + +  V+N +       N     QV L + I  V +   +Q+G  
Sbjct: 275 SGRFWLSSATGTLSVTDTPDVLNRIGRYIEYQNKVLSRQVQLNIQIVSVNQTRNEQMGLD 334

Query: 217 HSITGSS---SGPSKSFAADFGGKFVSEGG----DFSVKGVLDRFSFETVLHALERATAI 269
             +   S    G S + +        +  G    D +            ++HAL     +
Sbjct: 335 WGLVYKSLQNVGASLTGSMANASSSAASAGISILDTASGNAAKFSGSSLLIHALSEQGNV 394

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPT 321
                 T    +    ++         T SSST   +V        T    G+ +   P 
Sbjct: 395 SMALNQTDPTANLTPVAYQLSKSTGMLTSSSSTATANVGVTSTMTTTNVTTGLFMTMLPF 454

Query: 322 VLSPGRIGLRIQTEVSEP--------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           +   G + L+     + P          G    D            V L SG T+VL G 
Sbjct: 455 IQENGDVQLQFAFSYTSPPDIKSFVSRDGNTRNDTADTSTEGLARKVNLRSGQTLVLTGS 514

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + ++   K+G        ILG        +R  T + I  TP L++
Sbjct: 515 EQQNVSADKQGTFTPGNF-ILG---GGQTGSRGRTTLVIMITPVLLR 557


>gi|207722770|ref|YP_002253205.1| type iv pilus biosynthesis protein [Ralstonia solanacearum MolK2]
 gi|206587952|emb|CAQ18533.1| putative type iv pilus biosynthesis protein [Ralstonia solanacearum
           MolK2]
          Length = 563

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 90/260 (34%), Gaps = 32/260 (12%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEG 242
           +  L+     QV + V I EVR +     G   S+   S       +F         S  
Sbjct: 311 VRTLDAMFGKQVAIDVRIYEVRLNQEDNYGLNLSLGYKSGNGHTGATFTGVAPPTVSSNA 370

Query: 243 GDFSVKGVLDRFSFETV---LHALERATAI-RTLAEPTLT----AISGQSASFTSGGQHL 294
              SV   +     +     + AL     + + ++   +T     ++ QSA+        
Sbjct: 371 TPMSVGATIVGGKLDGTKVAVQALSTLGNVTQVVSRSGVTQNGKVMAMQSATLQDYIPSS 430

Query: 295 YKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMP 349
             T++S+ G+TS         G    FTP V+  GRI +     +S   P+     G   
Sbjct: 431 QTTLASNVGSTSSMQTAPDISGFTSTFTPKVV-NGRILIMFDMTLSNLNPLQEQTQGSGA 489

Query: 350 SYRVRKADT--------TVELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFR 399
           S    +  T        TV L  G ++VL GL          G+  P    IP+ G    
Sbjct: 490 SLSKVQLRTKPLARFQQTVGLKPGESLVLTGLRDQTTSTTNNGVGSPY---IPVAG---G 543

Query: 400 NSRFNREETEIFIAATPFLV 419
                + ET I +  T  L+
Sbjct: 544 GVDAAKRETMIAVVITARLL 563


>gi|255609758|ref|XP_002539091.1| conserved hypothetical protein [Ricinus communis]
 gi|223508756|gb|EEF23292.1| conserved hypothetical protein [Ricinus communis]
          Length = 279

 Score = 68.1 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 41/175 (23%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------------- 219
           K ++  L++    QV ++  I E R    + +G +                         
Sbjct: 107 KALLATLDVP-VRQVLIEARIVEARDTFGRALGVRLGGGDLRAQRGGDGGYSIGGDNRVA 165

Query: 220 ------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-----------FETVLHA 262
                   ++S  +   A +  G FV+  G  S       F+               L A
Sbjct: 166 IGTGFDNANASAGASGQAVNTSGSFVNLPGKLSNVANSGTFAMSIFNAAANRFLTLELSA 225

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
           +E     + ++ P L       A    G ++ Y +V++  GAT++      + L 
Sbjct: 226 MESDGQGKIISSPRLVTADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLE 279


>gi|163757621|ref|ZP_02164710.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica
           DFL-43]
 gi|162285123|gb|EDQ35405.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica
           DFL-43]
          Length = 136

 Score = 68.1 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           +  +      + + +   ++A L P+              +     I + ++   IL++ 
Sbjct: 1   MTHSTPVRRRLAIAAFGMAIAVLSPL------------TAVADEDLIRVFMDHARILKLD 48

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
             V  V++ +   ADV V  PRT+ L GK+ G  N++++  +G+ +++  IL+  D A+ 
Sbjct: 49  RTVSKVIIGNAAVADVTVSDPRTIVLTGKSYGTTNLVILDQEGEAIVDERILVSVDEANT 108

Query: 124 EMTLRR 129
               ++
Sbjct: 109 LRVFKQ 114


>gi|307318076|ref|ZP_07597512.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306896117|gb|EFN26867.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
          Length = 170

 Score = 68.1 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 43/111 (38%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
              L  +  ++ +     E   A+I       G      + ++    + +P     V++ 
Sbjct: 7   GAVLLLAMSALVRPAAADEQKTAIIPFQQRSTGAEGVERLVVDFAKTVALPRPASTVIIG 66

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           +   A   +   RT+ L GK  G  N+I+I  DG ++ NL + +      L
Sbjct: 67  NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRL 117


>gi|300021849|ref|YP_003754460.1| hypothetical protein Hden_0314 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523670|gb|ADJ22139.1| conserved hypothetical protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 170

 Score = 68.1 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%)

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           +  +L +P    +V+V +P+ ADV +     + + GK  G  NVI +      + +  ++
Sbjct: 44  QSQLLHLPRPASEVIVGNPSIADVTLQDGNLLVVTGKTFGITNVIALDAAHNVIQDQRVM 103

Query: 116 IERD 119
           +ERD
Sbjct: 104 VERD 107


>gi|213647736|ref|ZP_03377789.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 396

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 77/247 (31%), Gaps = 52/247 (21%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  L      G V  I+   +A+++++           
Sbjct: 192 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 242

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 243 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 271

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 272 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 331

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +     A    T  YG ++   P   + G+I + +  E             +   +P  
Sbjct: 332 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 389

Query: 352 RVRKADT 358
                 T
Sbjct: 390 GRTLIST 396


>gi|187930905|ref|YP_001901391.1| PilN [Ralstonia pickettii 12J]
 gi|187728949|gb|ACD30112.1| PilN [Ralstonia pickettii 12J]
          Length = 561

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 91/257 (35%), Gaps = 32/257 (12%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDF 245
           L+     Q+ + V I EVR       G   S+   S       +F         S     
Sbjct: 312 LDAMFGKQIGIDVKIYEVRLSQEDNYGLNLSLAYKSGNGHTGATFTGAGVPSVTSTASPM 371

Query: 246 SVKGVLDRFSFE---TVLHALERATAI-RTLAEPTLT----AISGQSAS---FTSGGQHL 294
           +    +     +     L AL     + R L    +T     ++ Q A+   F  G Q  
Sbjct: 372 TFGATIVGGKLDGTKAALQALSTLGNVSRVLQRGGVTQNGKVLALQDATLQDFVQGTQTT 431

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352
             +   ST A   +T+  G   +F P V+  GRI +     +S  +P+    +G   S  
Sbjct: 432 LASNVGSTTAIQTSTNISGFTGNFRPKVI-NGRIMMVFDMTISELQPLQTFTSGSSASQS 490

Query: 353 VRKADT--------TVELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSR 402
             +  T        +V L  G T+VL G+ +        GI  P    +P+LG       
Sbjct: 491 TVQLRTMPLARFEQSVGLRPGETLVLTGMREQSTSTTNNGIGSPY---MPLLG---GGVD 544

Query: 403 FNREETEIFIAATPFLV 419
             +++T I +  T  L+
Sbjct: 545 AQKKDTMIAVVITARLL 561


>gi|167583028|ref|ZP_02375902.1| putative bacteriophage-related lipoprotein [Burkholderia
           thailandensis TXDOH]
          Length = 101

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLA 371
           G++    PTV+    I L+++ E+S+ V      D  P+   R+  T   L  G  +VL 
Sbjct: 1   GLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLG 59

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           GL++D     + G   L       + F     +++ TE+ +  
Sbjct: 60  GLIQDRDATARSGYSWLP------SFFDGRSSSKQRTEVLLVL 96


>gi|220922544|ref|YP_002497846.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060]
 gi|219947151|gb|ACL57543.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060]
          Length = 217

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 1/97 (1%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + I    V I  VP  + DVLV +   ADV + S R + +  K  G+ N+IL+G + K +
Sbjct: 52  LRINAGSVEIFAVPEPMSDVLVGESRIADVAIISDRRIAVTAKAPGRTNIILMGENRKLL 111

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
             LD+L+ +        +R+  +   I     +  V+
Sbjct: 112 SKLDVLVFKAEDENGNPIRKQ-SGKQINTYYENGQVI 147


>gi|241258202|ref|YP_002978468.1| type IV secretion pathway protein [Ralstonia pickettii 12D]
 gi|309783222|ref|ZP_07677935.1| R64 PilN family type IVB pilus formation outer membrane protein
           [Ralstonia sp. 5_7_47FAA]
 gi|240869002|gb|ACS66659.1| type IV secretion pathway protein [Ralstonia pickettii 12D]
 gi|308917966|gb|EFP63650.1| R64 PilN family type IVB pilus formation outer membrane protein
           [Ralstonia sp. 5_7_47FAA]
          Length = 561

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 91/257 (35%), Gaps = 32/257 (12%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDF 245
           L+     Q+ + V I EVR       G   S+   S       +F         S     
Sbjct: 312 LDAMFGKQIGIDVKIYEVRLSQEDNYGLNLSLAYKSGNGHTGATFTGAGVPSVTSTASPM 371

Query: 246 SVKGVLDRFSFE---TVLHALERATAI-RTLAEPTLT----AISGQSAS---FTSGGQHL 294
           +    +     +     L AL     + R L    +T     ++ Q A+   F  G Q  
Sbjct: 372 TFGATIVGGKLDGTKAALQALSTLGNVSRVLQRGGVTQNGKVLALQDATLQDFVQGTQTT 431

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352
             +   ST A   +T+  G   +F P V+  GRI +     +S  +P+    +G   S  
Sbjct: 432 LASNVGSTTAIQTSTNISGFTGNFRPKVI-NGRIMMVFDMTISELQPLQTFTSGSSASQS 490

Query: 353 VRKADT--------TVELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSR 402
             +  T        +V L  G T+VL G+ +        GI  P    +P+LG       
Sbjct: 491 TVQLRTMPLARFEQSVGLRPGETLVLTGMREQSTSTTNNGIGSPY---MPLLG---GGVD 544

Query: 403 FNREETEIFIAATPFLV 419
             +++T I +  T  L+
Sbjct: 545 AQKKDTMIAVVITARLL 561


>gi|310765449|gb|ADP10399.1| Type IVB pilus formation outer membrane protein [Erwinia sp.
           Ejp617]
          Length = 548

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 87/254 (34%), Gaps = 28/254 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVS 240
           +  +N  NI    QV L V +  V +    ++G    ++   S G S + A     + + 
Sbjct: 300 RSFVNERNIELNRQVMLNVQVYSVEKQQSDRLGIDWKAVFKDSLGLSFTNAYTEASEAMM 359

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            GG   + G     S    + AL +   +  L + +    +  +       Q  Y + +S
Sbjct: 360 SGGVSIIDGKGKGSS--AFIKALAQQANVSMLTQASSMTTNLSAVPIQVALQQDYASNAS 417

Query: 301 STGATSV--------TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNA 345
           +    +V        +T   G  +   P ++           I +  +  + +      +
Sbjct: 418 TENTANVGSSSSISKSTITTGFNMTVLPYLIPHTSRMQLQFAINMSDEPTIRKFTSENTS 477

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF---RNSR 402
            ++   R++  +  V + SG T+VL+G          +G+            F     + 
Sbjct: 478 VELMKTRLKTFNQRVIMSSGQTLVLSGYQSMSNTANHQGV-------GSSHFFALGGGAE 530

Query: 403 FNREETEIFIAATP 416
            +   + + I  TP
Sbjct: 531 GDVNRSTLVILITP 544


>gi|259909855|ref|YP_002650211.1| Type IVB pilus formation outer membrane protein [Erwinia pyrifoliae
           Ep1/96]
 gi|224965477|emb|CAX57009.1| Type IVB pilus formation outer membrane protein [Erwinia pyrifoliae
           Ep1/96]
 gi|283479947|emb|CAY75863.1| Outer membrane lipoprotein bfpB; Bundle-forming pilus B; Flags:
           Precursor [Erwinia pyrifoliae DSM 12163]
          Length = 548

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 87/254 (34%), Gaps = 28/254 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVS 240
           +  +N  NI    QV L V +  V +    ++G    ++   S G S + A     + + 
Sbjct: 300 RSFVNERNIELNRQVMLNVQVYSVEKQQSDRLGIDWKAVFKDSLGLSFTNAYTEASEAMM 359

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            GG   + G     S    + AL +   +  L + +    +  +       Q  Y + +S
Sbjct: 360 SGGVSIIDGKGKGSS--AFIKALAQQANVSMLTQASSMTTNLSAVPIQVALQQDYASNAS 417

Query: 301 STGATSV--------TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNA 345
           +    +V        +T   G  +   P ++           I +  +  + +      +
Sbjct: 418 TENTANVGSSSSISKSTITTGFNMTVLPYLIPHTSRMQLQFAINMSDEPTIRKFTSENTS 477

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF---RNSR 402
            ++   R++  +  V + SG T+VL+G          +G+            F     + 
Sbjct: 478 VELMKTRLKTFNQRVIMSSGQTLVLSGYQSMSNTANHQGV-------GSSHFFALGGGAE 530

Query: 403 FNREETEIFIAATP 416
            +   + + I  TP
Sbjct: 531 GDVNRSTLVILITP 544


>gi|227818617|ref|YP_002822588.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii
           NGR234]
 gi|36958873|gb|AAQ87298.1| CpaC [Sinorhizobium fredii NGR234]
 gi|227337616|gb|ACP21835.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii
           NGR234]
          Length = 172

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK----ISIGLNKVIILQVPVDVQDV 69
           I      P++        A AA        +   ++    + + ++    L +      +
Sbjct: 13  IGAGWLVPALLACTLFGAAQAAEDRPPTTALEPTRQTEGVVRVIVDFARPLILARPASTL 72

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           ++ +PT A   +   +T+ L GK  G  N+I++   G ++ N+ + +      L
Sbjct: 73  IIGNPTIAQATLSDDKTVILTGKTPGSTNLIVMDAAGAEVANIILDVAAAGGRL 126


>gi|163785750|ref|ZP_02180256.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1]
 gi|159878981|gb|EDP72979.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1]
          Length = 363

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 69/215 (32%), Gaps = 28/215 (13%)

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           +   +R   ++NI    +S         R  ++  + +    T       N+    + K 
Sbjct: 158 QQAPKRISPNANINTVNIS---------RNRKEKPKIIAEKTTNTLVIYANRLEYEAIKN 208

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++  L+   + QV +   I EV +  LK+IG +  I GS  G +        G +   G 
Sbjct: 209 LVENLD-KQKKQVLITALITEVSQKALKEIGVRWQILGSYGGAAFKGGLSTEGFYNLLGS 267

Query: 244 DFSVKGVLDRFSFETVLH--------------ALERATAIRTLAEPTLTAISGQSASFTS 289
                GVL        +                L+R T    ++ P +  +    A+   
Sbjct: 268 TNFAAGVLSSSGRNVSISGNTLFFPDLLFLLSLLDRGTGFNIISSPKILTMDNTEATINV 327

Query: 290 GGQHLYKTV----SSSTGATSVTTHDYGVVLHFTP 320
                + +      +     +    + G+ L   P
Sbjct: 328 SQVTPFASSLKFDVNGNPIINYDYKEVGLKLKVLP 362


>gi|150398537|ref|YP_001329004.1| hypothetical protein Smed_3348 [Sinorhizobium medicae WSM419]
 gi|150030052|gb|ABR62169.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 140

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
            S+   VA L  +  A +   +         + + + ++   +L++   V  V++ +   
Sbjct: 4   LSATKRVAMLAFLTTALS-GGHAPSGARAAEEMMRVYMDHARVLKLDRPVSKVIIGNSDV 62

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           AD  V   +T+ L G+N G  N++++  DG  M++  IL+  D
Sbjct: 63  ADATVADAKTIVLTGRNFGTTNLVILDQDGNAMVDERILVSID 105


>gi|331650722|ref|ZP_08351760.1| bacterial type II and III secretion system domain protein
           [Escherichia coli M605]
 gi|331040432|gb|EGI12624.1| bacterial type II and III secretion system domain protein
           [Escherichia coli M605]
          Length = 127

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADT 358
           ++    SVT  + G +    P +     I L I+ ++S  V       D P+   R   T
Sbjct: 14  NNRPVQSVTYRNSGAIFTVKPFIYDD-VINLDIEQQLSNFVKTTTGVNDSPTLIKRDIRT 72

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            V +  G  IVL GL      +      LL   P+    F     + ++T+I +  
Sbjct: 73  QVSVRDGEIIVLGGLASSKTTETNTAFSLL---PV----FSGHASDSDKTDIIVVL 121


>gi|15963890|ref|NP_384243.1| hypothetical protein SMc04115 [Sinorhizobium meliloti 1021]
 gi|307315787|ref|ZP_07595301.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
 gi|307320422|ref|ZP_07599839.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|15073065|emb|CAC41524.1| Hypothetical protein SMc04115 [Sinorhizobium meliloti 1021]
 gi|306893988|gb|EFN24757.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306898555|gb|EFN29228.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
          Length = 138

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 39/77 (50%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
                + + + ++   +L++   V  V++ +   AD  V   +T+ L G+N G  N++++
Sbjct: 27  ARAAEEMMRVYMDHARVLKLDRPVSKVIIGNAEVADATVADAKTIVLTGRNFGTTNLVIL 86

Query: 103 GHDGKQMLNLDILIERD 119
             DG  M++  IL+  D
Sbjct: 87  DQDGNAMVDERILVSID 103


>gi|269105263|ref|ZP_06157955.1| hypothetical protein VDA_000083 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268160527|gb|EEZ39028.1| hypothetical protein VDA_000083 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 486

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 83/253 (32%), Gaps = 28/253 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVS 240
           ++V++        QV L++T+ E R ++ K  G    +  +   G  K            
Sbjct: 242 RQVVDKFQQELAKQVLLEITVLEFRSNLGKDQGIDWQLLKNVGDGTIKFLIPGTTATATG 301

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                +  G          + ALE    + T    ++  ISG  A  +      Y +  S
Sbjct: 302 NPAGLAFTGTGKWDGTTAFIKALEEQGTVSTQTPISMLTISGYPARISQTITTPYLSDVS 361

Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMP 349
           +    + T+          GV +     V   G + LR+  ++++        +N   + 
Sbjct: 362 TEVTETTTSTSTTRDKVVEGVDMMVNAKVQK-GVVSLRVTGKLTKIAGDTTEKINDATLR 420

Query: 350 SYRVRKADTTV--ELPSGGTIVLAGLLKDDIQQLKE---GIPLLSKIPILGALFRNSRFN 404
             + R AD +   +L  G T+V+  + +      K    GI  L                
Sbjct: 421 FIKTRDADLSFVNKLRYGQTVVIGSIKQQSTGANKSSSFGIDGLG----------MQSTT 470

Query: 405 REETEIFIAATPF 417
            E  E  +  TP 
Sbjct: 471 NETVETLVLLTPR 483


>gi|329917057|ref|ZP_08276428.1| type II and III secretion system protein [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327544637|gb|EGF30102.1| type II and III secretion system protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 537

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 84/264 (31%), Gaps = 53/264 (20%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-------------- 241
           +   V I +V        G Q +    +  P    AA+      +               
Sbjct: 228 IIYDVNIFQVDLKDNSDTGIQWNKLAWAGTPG--LAANPASTATTAVTPAVAGTTAATTA 285

Query: 242 -------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                        G    +     RFS + +++ L+    ++ ++ P L  ISG   S  
Sbjct: 286 ATNIGNAVSGGIAGLGLGLVLSSSRFSVDMLINFLQTQGNVKAISRPRLAVISGTKGSLR 345

Query: 289 SGGQHLYKTVSSSTGATSV-----TTHD--YGVVLHFTPTVLSP---GRIGLRIQTEVSE 338
            G    Y +   +  +TSV      T D   G+ L             RIGL I   VS 
Sbjct: 346 VGQSTTYVSKVGTNFSTSVNQVTTETRDLKTGLDLALFGDFSDNTVYTRIGLSISEIVSL 405

Query: 339 PVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGL-LKDDIQQLKEGIPLLSKIPILG 395
                   D  +P+   R+ +T +    G  I+L G+ +  D   ++ G+          
Sbjct: 406 NKFTALGTDLTLPTTADREINTVIRARPGDMILLGGITINRDASDIRRGV---------- 455

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
                S      +E+ +A    +V
Sbjct: 456 -TQNGSSDTVTRSELVLALKSKVV 478


>gi|134287991|ref|YP_001110155.1| type IVB pilus formation outer membrane protein [Burkholderia
           vietnamiensis G4]
 gi|134132641|gb|ABO60267.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia vietnamiensis G4]
          Length = 563

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 80/260 (30%), Gaps = 34/260 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGG 236
           KK ++  N      V   V +  V        G   +     +TG         A     
Sbjct: 309 KKYIDYQNKRLSKFVQFNVKVYSVTLSNNDSAGVNWNALYQTVTGKYGIKLSGAAFSAPA 368

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             VS G              E V+ AL             L  ++ Q+ +   G Q  Y 
Sbjct: 369 AAVSAGFSVLKSSGSPWSGTEAVVSALNEQGKANLERSQALPTLNFQAVATQVGTQTGYV 428

Query: 297 TVSSST------GATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIG 342
             + +T       +TS+   T + G  L   P V     I ++    +S         IG
Sbjct: 429 AGTQTTQTAQVGSSTSIQMGTINVGFNLSLFPYVQDNNDILVQFNLNLSNLDSIRKVNIG 488

Query: 343 VNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-----A 396
            ++ + P+  +       V +  G T++L G+ ++D    + G          G     A
Sbjct: 489 DSSAEAPNINLPLNTVQKVRIRPGDTLMLTGINQNDDSSNRTGT---------GMHWNWA 539

Query: 397 LFRNSRFNREETEIFIAATP 416
           L          T + +  TP
Sbjct: 540 LGGGVNAQSNRTMLVVLITP 559


>gi|213649903|ref|ZP_03379956.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 109

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T   +P G ++++ G  +D      + IP+L K+P++G+LFR S  N+          
Sbjct: 2   ISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN-----VVR 56

Query: 416 PFLVKPVAMRDLSRPDDHYSVED 438
            F+++P  + D   PD   SV +
Sbjct: 57  VFMIEPKEIVDPLTPDASESVNN 79


>gi|153842373|ref|ZP_01993497.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
           (CMK)(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase) [Vibrio parahaemolyticus AQ3810]
 gi|149745386|gb|EDM56637.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
           (CMK)(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase) [Vibrio parahaemolyticus AQ3810]
          Length = 356

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 36/161 (22%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229
           ++++  L+I    QV ++  I  +    + ++G +   T  +   +              
Sbjct: 104 REIIESLDIP-VKQVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 162

Query: 230 ---------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERAT 267
                                   +      +     F V  +      +  L AL++ +
Sbjct: 163 YEGGGDGEGEEGGDGVGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQES 222

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
               ++ P L   + + A    G +  Y   SSS+GAT++ 
Sbjct: 223 KAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATALQ 262


>gi|187928617|ref|YP_001899104.1| PilN [Ralstonia pickettii 12J]
 gi|241114194|ref|YP_002973669.1| type IV secretion pathway protein [Ralstonia pickettii 12D]
 gi|187725507|gb|ACD26672.1| PilN [Ralstonia pickettii 12J]
 gi|240868767|gb|ACS66425.1| type IV secretion pathway protein [Ralstonia pickettii 12D]
          Length = 563

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 90/260 (34%), Gaps = 32/260 (12%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEG 242
           +  L+     QV + V I EVR +     G   S+   S       +F         S  
Sbjct: 311 VRTLDAMFGKQVAIDVRIYEVRLNQEDNYGLNLSLGYKSGNGHTGATFTGVAPPTVSSNA 370

Query: 243 GDFSVKGVLDRFSFETV---LHALERATAI-RTLAEPTLT----AISGQSASFTSGGQHL 294
              SV   +     +     + AL     + + ++   +T     ++ QSA+        
Sbjct: 371 TPMSVGATIVGGKLDGTKVAVQALSTLGNVTQVVSRSGVTQNGKVMAMQSATLQDYIPSS 430

Query: 295 YKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMP 349
             T++S+ G+TS         G    FTP V+  GRI +     +S   P+     G   
Sbjct: 431 QTTLASNVGSTSSMQTAPDISGFTSTFTPKVV-NGRILIMFDMTLSNLNPLQEQTQGSGA 489

Query: 350 SYRVRKADT--------TVELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFR 399
           S    +  T        TV L  G ++VL GL          G+  P    +P+ G    
Sbjct: 490 SLSKVQLRTKPLARFQQTVGLKPGESLVLTGLRDQTTSTTNNGVGSPY---VPVTG---G 543

Query: 400 NSRFNREETEIFIAATPFLV 419
                + ET I +  T  L+
Sbjct: 544 GVDAAKRETMIAVVITARLL 563


>gi|329891000|ref|ZP_08269343.1| pilQ [Brevundimonas diminuta ATCC 11568]
 gi|328846301|gb|EGF95865.1| pilQ [Brevundimonas diminuta ATCC 11568]
          Length = 129

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 44/86 (51%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           AA++ ++   + + + + + L++   +Q+      V+V++P  ADV V   RT+++ GK+
Sbjct: 11  AALLVLTAPAVAQERPLDVKLDQATRVQLRAPAGSVIVANPRIADVTVTDARTLFITGKS 70

Query: 94  VGQANVILIGHDGKQMLNLDILIERD 119
            G   +I +   G+ +    + +   
Sbjct: 71  YGLTEIIAVDALGRPLFQRQVAVSPG 96


>gi|290243131|ref|YP_003494801.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
 gi|288945636|gb|ADC73334.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
          Length = 611

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 120/357 (33%), Gaps = 50/357 (14%)

Query: 137 RVEMVSDTVV---LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           ++E +  + V   L   V T + +  A E  E ++ ++ RN                   
Sbjct: 181 QIEDLGGSAVRGELDAGVITYRAAPNAHEDIEQYVERAARNAAV---------------- 224

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             V L++ + +VR +  ++ GF  + +         +     G            +   +
Sbjct: 225 --VHLQLALLDVRLNREERKGFNWNELAVRMGSLVNTDVEQLGEMLTFTRQGVGAEVQRN 282

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTG---A 304
             S   VL+AL       T  + TLT ++G      SGG+  +      TVS  +     
Sbjct: 283 DVSVTAVLNALSEYGDATTEQDITLTTVAGSEVDMRSGGEIPFVGDLDTTVSGESNIRSG 342

Query: 305 TSVTTHDYGVVLHFTPT-------VLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRK 355
            SV T   G+ +  TP        V S   + L    ++ E  +G+  G +  P  +   
Sbjct: 343 ASVDTQSVGIEVAITPRYDASTDLVTSSIDMDLTDVVQIREFDVGLEGGTLSHPELQDLS 402

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
                 L  G   ++ G+  D + Q    +  L       A   + R + +   +FI   
Sbjct: 403 FTNISRLRPGEATLIGGIAYDQVDQDFTSLAGLED-----AKAGSQRISTDRHAMFILLR 457

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI------YGPKEASEVEGQNYK 466
           P +       D   P    +   D          ++      Y    + ++EGQ+ +
Sbjct: 458 PTVTVFTDEGDDLLPLPGTARACDTSVVSIGEDEELVETTAAYFRSGSDQLEGQSAR 514


>gi|89885889|ref|YP_516087.1| Type II secretory pathway component PulD-like [Rhodoferax
           ferrireducens T118]
 gi|89347887|gb|ABD72089.1| Type II secretory pathway component PulD-like [Rhodoferax
           ferrireducens T118]
          Length = 475

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 68/428 (15%), Positives = 134/428 (31%), Gaps = 59/428 (13%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVII---LQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
           A    IS V+    +  +IG  ++ I   LQ    +  + + + T     V+      L 
Sbjct: 41  APAPEISVVDRSPDRTRNIGKEELFIAQPLQSSDPMPRINIENVTILSSRVYELMRTLLD 100

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--- 147
           GKN+   +  + G + K M    +        LE  L  F             T+ +   
Sbjct: 101 GKNI---SFSISGVNSKVMRR-HVSASNITGDLEQILDDFANSVGFYWHYKGGTLHIAPD 156

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGR---------NQYANSSSKKVMNLLN------IAG 192
              + TI       E     L   G          +    S++++    ++         
Sbjct: 157 RQYIATIPPIDDVYESMPPMLQSMGAIDVFVDRTSHLVTYSANREASEKIDGYLKHIRDN 216

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  ++  V + +V  D   + G +           +             G  FS      
Sbjct: 217 KKMISYDVYVWQVELDGDHKNGIRWEKLDEEIASKRGVKRQAASSDAKLGAGFSSTFGRG 276

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-----KTVSSSTGATSV 307
               + +   L     I  +++P +  ISG  ++F  G   +Y        SS    T+V
Sbjct: 277 ELPIDVLSSFLSAQGKIHAISQPKMAMISGGKSTFRIGNTTVYAKQVGTDSSSGVNKTTV 336

Query: 308 TTHDY--GVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTV 360
           TT     G+ L     +        I +++   +       N   +  P    R+  T  
Sbjct: 337 TTAQALSGIELTVVGNLDGETVYTDIQMKLNDLLRFNSFSANGISLQLPQNANRELSTLA 396

Query: 361 ELPSGGTIVLAGL----------LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            +  G +++LAG+          +KD  ++    +P             +     + TE+
Sbjct: 397 RIRPGNSLLLAGINISRTDDSRTVKDAREKNSMTLP------------NSMYETEQRTEL 444

Query: 411 FIAATPFL 418
            +  +P +
Sbjct: 445 VLVFSPNV 452


>gi|302381761|ref|YP_003817584.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192389|gb|ADK99960.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 139

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 41/89 (46%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A V  +    + + + +++G+++   + +      V+V +P  ADV V    T+++ GK 
Sbjct: 17  AGVTCLFAAGMAQAQSLNVGIDRSARVALRGSAASVIVGNPAIADVTVVDANTLFVTGKG 76

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAH 122
            G   VI +   G+ +   ++++      
Sbjct: 77  YGVTEVIAVDGLGRTIYQGEVIVSGGSTG 105


>gi|99035082|ref|ZP_01314871.1| hypothetical protein Wendoof_01000288 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 413

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 19/178 (10%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +N +      QV ++  I EV  D   +     ++     G       D      
Sbjct: 236 AVEEYINKVKKLASSQVMIEAKIVEVVLDD--KYLSGMNLNDLQDGTKSIINQD------ 287

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298
                 ++           ++  L++      ++ P + AI+ Q A  +    H+Y T  
Sbjct: 288 --NSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSD 345

Query: 299 -------SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDM 348
                  S+ T  T + +   GVVL   P++      I + I   +S         D+
Sbjct: 346 IQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDI 403


>gi|238898455|ref|YP_002924136.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466214|gb|ACQ67988.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 546

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 98/256 (38%), Gaps = 19/256 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L G V+++    R                    + ++ ++  N     QV L + +  V 
Sbjct: 259 LQGAVKSMLTPGRGRLFLSAGNLTVTDVPRVLDTVERFVDERNQTLNRQVVLNIEVLSVE 318

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGG--KFVSEGGDFSVKGVLDRFSFETVLHALE 264
                Q+G   +   ++S    S +  FGG    + +GG   V G L     +  L AL 
Sbjct: 319 ARQKDQLGLDWNAVFNNSRWGLSLSQAFGGVSGNIMQGGFSVVDGRLAGS--KVFLKALA 376

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVT--THDYGVVL 316
               +  + + + T  +    +     Q  Y    ++        ATS+   T   G  +
Sbjct: 377 EQAKVSVVTQQSSTTTNLSPVAMQVAEQEDYVAQVTTQATANVGTATSIQPATITTGFYI 436

Query: 317 HFTPTVLSPG-RIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           +  P +L  G  + L+    +S+P        G ++ ++ + +++     V++ +G T+V
Sbjct: 437 NLLPNILPDGQHLLLQFAINLSDPPTRRTFTSGESSVELLNTQLKTFTQRVKMKTGQTLV 496

Query: 370 LAGLLKDDIQQLKEGI 385
           L+G  +   +  K+G+
Sbjct: 497 LSGFQQASRKGSKQGV 512


>gi|330984052|gb|EGH82155.1| hypothetical protein PLA107_03384 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 512

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 30/206 (14%)

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
               S+G + ++      FSF +  + L      +T    ++  ISG+  +  SG +  Y
Sbjct: 303 AGLSSKGLELNIAA--GDFSFLSAFNLLSTYGETKTTQSVSMDTISGEEVAIKSGQKIPY 360

Query: 296 K--------------TVSSSTGATSVTTHDYGVVLHFTPTV-LSPGRIGLRIQTEVS--- 337
                            S+S G+T V   D G+ L   P        + + +  ++S   
Sbjct: 361 IDSIGVNSNNNNGYNNSSNSLGSTDVKDVDIGLELKLKPYYDNRSKLVSIGVDLKLSSLL 420

Query: 338 -----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                     +     P  + +     V++ +G ++++ GL+ D +   +  + +L    
Sbjct: 421 RFVELSAGNQIGTLTRPQTQEQSFTDNVKVRAGESMIIGGLMYDQLSDNRSNLAMLDD-- 478

Query: 393 ILGALFRNSRFNREETEIFIAATPFL 418
                  +       T +FI   P +
Sbjct: 479 ---YKTASKSAKVTRTAMFILIRPTV 501


>gi|332161774|ref|YP_004298351.1| Bacterial type II and III secretion system protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|332161787|ref|YP_004298364.1| Bacterial type II and III secretion system protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666004|gb|ADZ42648.1| Bacterial type II and III secretion system protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666017|gb|ADZ42661.1| Bacterial type II and III secretion system protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 298

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 4/119 (3%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +N +++A  DQV ++  + E        + F                +  G    + GG 
Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           F   G+ D       L A++  +  + ++ P +   SGQ+   + G    + T   +  
Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGN 296


>gi|90419761|ref|ZP_01227670.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335802|gb|EAS49550.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 157

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 38/78 (48%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           +   +     + + ++   I+Q+      V+V +P   DV V S   + L G++ G  N+
Sbjct: 23  NAAAVDSRDVLPVEVDHARIVQIDNPAATVIVGNPAIVDVEVLSSNRLVLTGRSYGITNL 82

Query: 100 ILIGHDGKQMLNLDILIE 117
           +++  +G  +++  + ++
Sbjct: 83  VILDANGDIVMDQQVAVQ 100


>gi|86748911|ref|YP_485407.1| hypothetical protein RPB_1788 [Rhodopseudomonas palustris HaA2]
 gi|86571939|gb|ABD06496.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 164

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 41/80 (51%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           ++S    G    IS+ +++  ++++P ++  ++V +P  ADV +     + + GK  G  
Sbjct: 24  SLSVASAGTEDTISVSVDQAKLIRLPQNISTLVVGNPLIADVAMQPGGMVVVTGKGYGAT 83

Query: 98  NVILIGHDGKQMLNLDILIE 117
           NVI +   G  + +  I +E
Sbjct: 84  NVIAMDRKGAVIADRLIQVE 103


>gi|160903268|ref|YP_001568849.1| NolW domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360912|gb|ABX32526.1| NolW domain protein [Petrotoga mobilis SJ95]
          Length = 388

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 84/235 (35%), Gaps = 18/235 (7%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFVSEG 242
           + +L++   + +  +++T+  V  +       + ++   +  G   SF       F S  
Sbjct: 162 IKDLVDKLDKREPYIELTVYIVETNERYSDLIKGNVFNINQKGIINSF------SFTSPA 215

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             FSV+ +     FE  +   E+      + +  +  + G+ A  +          +   
Sbjct: 216 IGFSVQDL-----FEAEIEMYEKNETANLVTKQVVNVLPGEPALLSLKNLESIVFTTYRN 270

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
              ++ +   G+ +  TPT++      L+I        +     D       + +T V L
Sbjct: 271 EFRNIES---GIEIEMTPTMM---NQILQISFRTKTTNLMEVTNDSYLLSESELETKVNL 324

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
                +++A L    +     G  LL  +P L  LF +++   E   + I  T  
Sbjct: 325 NPNEILLIADLDLSQLYSKNGGTTLLKDLPFLRFLFGDNQNIDESKRMMIFLTAT 379


>gi|114705461|ref|ZP_01438369.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506]
 gi|114540246|gb|EAU43366.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506]
          Length = 156

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 40/82 (48%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V +   V   K   I+I ++   ILQ+      V++ +P   D+ V S   + L GK+ G
Sbjct: 18  VGSTPAVAEAKKDMIAIAVDHARILQIDRGAGTVIIGNPAIVDIEVLSEERLVLTGKSYG 77

Query: 96  QANVILIGHDGKQMLNLDILIE 117
             NVI++  D   +++  + ++
Sbjct: 78  ITNVIILDRDNSVLMDEQVAVQ 99


>gi|218530650|ref|YP_002421466.1| hypothetical protein Mchl_2699 [Methylobacterium chloromethanicum
           CM4]
 gi|218522953|gb|ACK83538.1| conserved hypothetical protein [Methylobacterium chloromethanicum
           CM4]
          Length = 159

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 21  PSVAKLPPIKEANAAVINISDV------EIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
           P +        A+AA++ +  V      E      +S+ ++   ++++P   Q V+V +P
Sbjct: 2   PRLRSALLPATASAAIMMVVFVGQAHANEPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNP 61

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
             AD+ +     + L GK+ G  N+I +   G  +    I ++   A +
Sbjct: 62  MIADITLQKNGVVVLTGKSFGTTNLIALDGKGAMLAESTISVQAPQASI 110


>gi|86355860|ref|YP_467752.1| hypothetical protein RHE_CH00201 [Rhizobium etli CFN 42]
 gi|86279962|gb|ABC89025.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 102

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 36/66 (54%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           ++   +L++   V  V+V +   AD  V   +T+ L G++ G  N++L+  DG  +L+  
Sbjct: 1   MDHARVLKLDRPVSKVIVGNAQVADATVADAKTIVLTGRSFGTTNLVLLDADGNAILDER 60

Query: 114 ILIERD 119
           IL+  D
Sbjct: 61  ILVSID 66


>gi|188581656|ref|YP_001925101.1| hypothetical protein Mpop_2404 [Methylobacterium populi BJ001]
 gi|179345154|gb|ACB80566.1| conserved hypothetical protein [Methylobacterium populi BJ001]
          Length = 160

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 38/81 (46%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           +      +S+ ++   ++++P   Q V+V +P  AD+ +     + L GK+ G  N+I +
Sbjct: 31  DPAPQGAVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNLIAL 90

Query: 103 GHDGKQMLNLDILIERDIAHL 123
              G  +    I ++   A +
Sbjct: 91  DGRGAMLAESTISVQAAQASI 111


>gi|45751681|emb|CAF21324.1| InvG protein [Burkholderia pseudomallei]
          Length = 214

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 77/219 (35%), Gaps = 22/219 (10%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 10  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 68

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G         G  F + GG+ +    LD   F   + AL +   
Sbjct: 69  RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 117

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 118 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 175

Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTT 359
           + + +  E        + G +       P     + +T 
Sbjct: 176 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTV 214


>gi|149177451|ref|ZP_01856055.1| hypothetical protein PM8797T_19156 [Planctomyces maris DSM 8797]
 gi|148843784|gb|EDL58143.1| hypothetical protein PM8797T_19156 [Planctomyces maris DSM 8797]
          Length = 1668

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 34/57 (59%)

Query: 363  PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            P GGT++L G+ +    +   G+P+L+K+P +  LF+N+   RE   + +  TP ++
Sbjct: 1600 PDGGTVLLGGVKRLREGRSMAGVPILNKLPYVSRLFKNTGVGRETESLMMMVTPRII 1656



 Score = 40.8 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 8/113 (7%)

Query: 236  GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
            G F +  G      +L        ++A +       +  P +T  +GQ A  TS     +
Sbjct: 1387 GSFNANAGVNVGLAILSDIEAFFFINAAQADERSNLMFAPKVTLFNGQVAFVTSNVSRPF 1446

Query: 296  KTV-SSSTGATSVTTHDY------GVVLHFTPTVLSPGR-IGLRIQTEVSEPV 340
                  + G  +V           GV L  +  + +  R + L +    +   
Sbjct: 1447 VISLVPTVGNFAVGFTPVIANIPEGVSLTVSAVISADRRYVRLSVNPNFTNVT 1499


>gi|307943136|ref|ZP_07658481.1| PilQ [Roseibium sp. TrichSKD4]
 gi|307773932|gb|EFO33148.1| PilQ [Roseibium sp. TrichSKD4]
          Length = 161

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 42/81 (51%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
           +    I +   +++ +++  + ++      V+V +P  ADV +H   T+ + GK+ G  N
Sbjct: 20  VGSSAIAQEGPVTVMVDRAKVFRIQEPASTVIVGNPFIADVAMHDASTVVITGKSYGSTN 79

Query: 99  VILIGHDGKQMLNLDILIERD 119
           ++++  + + +++  I ++  
Sbjct: 80  LVILDDNNEPIIDEVITVKAS 100


>gi|254561617|ref|YP_003068712.1| hypothetical protein METDI3204 [Methylobacterium extorquens DM4]
 gi|254268895|emb|CAX24856.1| conserved hypothetical protein; putative exported protein precursor
           [Methylobacterium extorquens DM4]
          Length = 160

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 38/81 (46%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E      +S+ ++   ++++P   Q V+V +P  AD+ +     + L GK+ G  N+I +
Sbjct: 31  EPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNLIAL 90

Query: 103 GHDGKQMLNLDILIERDIAHL 123
              G  +    I ++   A +
Sbjct: 91  DGKGAMLAESTISVQAPQASI 111


>gi|316933043|ref|YP_004108025.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1]
 gi|315600757|gb|ADU43292.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1]
          Length = 162

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 38/75 (50%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
             G    IS+ +++  ++++P D+  ++V +P  ADV +     + + GK  G  NVI +
Sbjct: 28  TAGTEDSISVNVDQAKLIRLPQDIATIVVGNPLIADVTLQPGGMVVVTGKGYGATNVIAM 87

Query: 103 GHDGKQMLNLDILIE 117
              G  + +  I +E
Sbjct: 88  DRKGAIVADRLIQVE 102


>gi|163851899|ref|YP_001639942.1| hypothetical protein Mext_2476 [Methylobacterium extorquens PA1]
 gi|240139022|ref|YP_002963497.1| hypothetical protein MexAM1_META1p2441 [Methylobacterium extorquens
           AM1]
 gi|163663504|gb|ABY30871.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
 gi|240008994|gb|ACS40220.1| conserved hypothetical protein; putative exported protein precursor
           [Methylobacterium extorquens AM1]
          Length = 160

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 38/81 (46%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           E      +S+ ++   ++++P   Q V+V +P  AD+ +     + L GK+ G  N+I +
Sbjct: 31  EPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNLIAL 90

Query: 103 GHDGKQMLNLDILIERDIAHL 123
              G  +    I ++   A +
Sbjct: 91  DGKGAMLAESTISVQAPQASI 111


>gi|110632963|ref|YP_673171.1| hypothetical protein Meso_0606 [Mesorhizobium sp. BNC1]
 gi|110283947|gb|ABG62006.1| conserved hypothetical protein [Chelativorans sp. BNC1]
          Length = 167

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 43/107 (40%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
            +    +   P     +  +     V   +   + + ++   +L +      ++V +   
Sbjct: 9   LALAVLLVTPPAEAGGDPLLAVEQTVAYERAGAVRLTIDFAELLVLDEPASTIIVGNSAI 68

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           A   +   RT+ L G+  G  N+I++  +G+++ NL + +     HL
Sbjct: 69  AAASLTDDRTLILTGRTAGATNLIVLDAEGEEIANLVLEVVAAGNHL 115


>gi|148258230|ref|YP_001242815.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1]
 gi|146410403|gb|ABQ38909.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1]
          Length = 145

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 39/74 (52%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I++ +++  ++++P  V  ++V +P  ADV + S   + + GK+ G  N I +   G+ +
Sbjct: 16  IAVNVDQAKLVKLPDRVATLVVGNPMIADVTLQSGGIIVVTGKSYGATNFIAMDRGGQVL 75

Query: 110 LNLDILIERDIAHL 123
           ++  I +      L
Sbjct: 76  VDRQIQVAGPTDRL 89


>gi|118589699|ref|ZP_01547104.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614]
 gi|118437785|gb|EAV44421.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614]
          Length = 154

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 44/89 (49%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV   + V + +   + + +++  + ++      V+V +P  ADV +    T+ + GK+ 
Sbjct: 13  AVALSTTVAVAQDGPVLVTVDRAKVFRIEDGAAAVIVGNPFIADVAMFDQNTVVITGKSY 72

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHL 123
           G  N++++  D K +++  I ++     +
Sbjct: 73  GTTNLVILDGDNKPIVDETITVKASDDDV 101


>gi|38638012|ref|NP_942986.1| putative component of type II secretion apparatus [Ralstonia
           eutropha H16]
 gi|32527350|gb|AAP86100.1| putative component of type II secretion apparatus [Ralstonia
           eutropha H16]
          Length = 552

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 92/261 (35%), Gaps = 28/261 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEV--RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           ++ +  L      QV + V + EV   R+    +    +   SS  P  SF++       
Sbjct: 297 EQFVKSLVAMYGKQVAIDVQVYEVRVTREDNFGLNLSLAYQSSSGKPDVSFSSVSTPTIS 356

Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISG-----QSASFTSGG 291
                 ++   +    F     V+ AL     +  +   +    +G     Q+A+     
Sbjct: 357 GSATAMNLGATIMSGPFAGSKAVVQALSTLGNVSQVVSRSGVTQNGKVLALQTATLQDYV 416

Query: 292 QHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLR----------IQTEVSE 338
                T++++ G+TS     T  YG   +F P V+  GRI +           +Q   S 
Sbjct: 417 AQSQTTLAANVGSTSSIQTGTVTYGFTSNFLPKVV-DGRILMNFDMTLSDLLPLQRFNSG 475

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 +  + +    +   ++ L  G ++VL GL          G+    + P + AL 
Sbjct: 476 GDANQTSVQLRTMPTNRFTQSITLKPGESLVLTGLRNQKASTTNNGV---GE-PWMAALG 531

Query: 399 RNSRFNREETEIFIAATPFLV 419
                 + +T I I  +  L+
Sbjct: 532 GGVGALKGDTVIAIMISARLL 552


>gi|83312848|ref|YP_423112.1| hypothetical protein amb3749 [Magnetospirillum magneticum AMB-1]
 gi|82947689|dbj|BAE52553.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 150

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + + I L    +L +    + V+V +P  ADV V  PRT+ +FGK  G   + ++   G
Sbjct: 25  TEALEIPLGGATLLPMRGVARSVVVGNPAIADVTVDGPRTITVFGKAPGGTTLAVLDAGG 84


>gi|146338128|ref|YP_001203176.1| hypothetical protein BRADO1025 [Bradyrhizobium sp. ORS278]
 gi|146190934|emb|CAL74939.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 145

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 39/74 (52%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I++ +++  ++++P  V  ++V +P  ADV + S   + + GK+ G  N I +   G+ +
Sbjct: 16  IAVNVDQAKLVKLPDRVATLVVGNPMIADVTLQSGGIIVVTGKSYGATNFIAMDRGGQVL 75

Query: 110 LNLDILIERDIAHL 123
           ++  I +      L
Sbjct: 76  IDRQIQVAGPTDRL 89


>gi|75674503|ref|YP_316924.1| hypothetical protein Nwi_0305 [Nitrobacter winogradskyi Nb-255]
 gi|74419373|gb|ABA03572.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 163

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           + +   + + A L     A A VI          + IS+ +++  ++++P  +  ++V +
Sbjct: 12  VSVIGVSFAAAILLGAATAPAEVI---------SEPISVNVDQAKLVRLPGPIATIVVGN 62

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
           P  ADV +     + + GK  G  N+I +   G  M++  I +E
Sbjct: 63  PLIADVTLQPGGLVVVTGKGYGATNMIAMDRAGSIMVDRVIQVE 106


>gi|27376555|ref|NP_768084.1| hypothetical protein blr1444 [Bradyrhizobium japonicum USDA 110]
 gi|27349696|dbj|BAC46709.1| blr1444 [Bradyrhizobium japonicum USDA 110]
          Length = 165

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 39/82 (47%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
           +       I++ +++  ++++P  V  ++V +P  ADV +     + + GK  G  N I 
Sbjct: 28  LAESTADTIAVNVDQAKLVRLPGKVATIVVGNPLIADVTLQPGGMIVVTGKGYGATNFIA 87

Query: 102 IGHDGKQMLNLDILIERDIAHL 123
           +   G+ +++  I +E     L
Sbjct: 88  LDRGGEILVDRQIQVEGPSDRL 109


>gi|85713500|ref|ZP_01044490.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A]
 gi|85699404|gb|EAQ37271.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A]
          Length = 163

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 20  NPSVAKLPPIKEANAAVIN-ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
            PS A +  +  A   ++  ++       + IS+ +++  ++++P  +  ++V +P  AD
Sbjct: 8   GPSRASVIGMSLAAVMLLGPVAAPAEVTSEPISVNVDQAKLVRLPGHIATIVVGNPLIAD 67

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
           V +     + + GK  G  NVI +   G  +++  I +E
Sbjct: 68  VTLQPGGLVVVTGKGYGATNVIAMDRAGSILVDRVIQVE 106


>gi|281356727|ref|ZP_06243218.1| hypothetical protein Vvad_PD2101 [Victivallis vadensis ATCC
           BAA-548]
 gi|281316854|gb|EFB00877.1| hypothetical protein Vvad_PD2101 [Victivallis vadensis ATCC
           BAA-548]
          Length = 479

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 97/281 (34%), Gaps = 43/281 (15%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------------GKFVS 240
            Q+ +++ I  +  +  +++G  + +   +   ++ FA  F                 +S
Sbjct: 193 PQLQVQLNIYVISDNNFRELGIDY-LAWKNGPGAEIFATGFDFSNFYSVEHLQDFTNILS 251

Query: 241 EGG---DFSVKGVLDRFSFETV-LHALERATAIRTLAEPTLTAISG---------QSASF 287
            G       + G+L   +F+   L  L +     T A   LT  +          + AS+
Sbjct: 252 SGPIWDATGLGGILVAPNFDATFLRMLAQKGKAWTAASAMLTLTNDFTTPAATSWEDASY 311

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDY--GVVLHF---TPTV---LSPGRIGLRIQTEVSEP 339
               +   +  +        T+ D   G    F   +P +     P +  L +    +  
Sbjct: 312 R--FKFTPQLQNIVKDENQTTSLDALDGSEFSFYLSSPVICFGDDPAKKALTLMCNWNLE 369

Query: 340 VIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           V      +   + +       + + L +G   +LA   K  + +   G+P L +IP+L  
Sbjct: 370 VNSLVETDNQGVATIDSNSFSSNLTLEAGTEKLLAVYDKHVVTEQYNGMPFLGEIPVLKY 429

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
           LF        +  + +  T   V PV  +++  P     +E
Sbjct: 430 LFGAESKVDSK--MRVFVTMSAV-PVETKNIPNPAAGKVIE 467


>gi|323137421|ref|ZP_08072499.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC
           49242]
 gi|322397408|gb|EFX99931.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC
           49242]
          Length = 180

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF-GKNVGQ 96
           +++     K + I + L+   I+++P   Q +++ +P  ADV +     + +  GK+ G 
Sbjct: 45  SMATDASAKERPIRVELDYARIVRIPPGAQTLVIGNPLVADVTMLRNSQLMVITGKSFGT 104

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHL 123
            N+I++   G Q+    + +      L
Sbjct: 105 TNLIVLDRTGAQVGESIVTVAPAEDKL 131


>gi|218780600|ref|YP_002431918.1| hypothetical protein Dalk_2758 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761984|gb|ACL04450.1| hypothetical protein Dalk_2758 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 351

 Score = 63.1 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 30/169 (17%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
             E  L+A E    +     P++  +S +      G   L   V       S       +
Sbjct: 203 DLEAALYAAENRNELMMARRPSVKTLSNEEVLIKHGWDILIDPVQEVGSLGSADYDSMDI 262

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL- 373
            LH TP ++    I + +  E    +  +NA D   Y     +  +E+  G TI+++G+ 
Sbjct: 263 TLHATPRIIRNEHIFMNLSVET---IWYLNASDHGKYNN-SGEMGIEVNQGETIIISGIT 318

Query: 374 ----LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
               +K++ ++ +               F       +E E  +  TP +
Sbjct: 319 LPSSIKEETERGE---------------F------EDEREFLVFITPTI 346


>gi|188591492|ref|YP_001796091.1| type IV secretion pathway, outer membrane lipoprotein, putative
           precursor (pilN homolog) [Cupriavidus taiwanensis]
 gi|170938887|emb|CAP63888.1| type IV secretion pathway, outer membrane lipoprotein, putative
           precursor (pilN homolog) [Cupriavidus taiwanensis LMG
           19424]
          Length = 556

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 28/261 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--FAADFGGKFV 239
           ++ +  L      QV + V + EVR       G   S+   SS       F++       
Sbjct: 301 EQFVKSLAAMYGKQVAIDVQVYEVRVTREDNYGLNLSLAYQSSAGQTGVAFSSVSTPTIS 360

Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISG-----QSASFTSGG 291
                 ++   +    F     V+ AL     +  +   +    +G     Q+A+     
Sbjct: 361 GSATPMNLGATIMSGPFAGSKAVVQALSTLGNVSQVVSRSGVTQNGKVLALQTATLQDYV 420

Query: 292 QHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLR----------IQTEVSE 338
                T++++ G+TS     T  YG   +F P V+  GRI +           +Q   S 
Sbjct: 421 AQSQTTLAANVGSTSSIQTGTVTYGFTSNFLPKVV-DGRILMNFDMTLSDLLPLQRFNSG 479

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 +  + +    +   ++ L  G ++VL GL          G+    + P + AL 
Sbjct: 480 GDANQTSVQLRTMPTNRFTQSITLKPGESLVLTGLRNQKASTTNNGV---GE-PWMAALG 535

Query: 399 RNSRFNREETEIFIAATPFLV 419
                 + +T I I  +  L+
Sbjct: 536 GGVGALKGDTVIAIMISARLL 556


>gi|59714055|ref|YP_206830.1| toxin coregulated pilus outer membrane protein TcpC [Vibrio
           fischeri ES114]
 gi|59482303|gb|AAW87942.1| toxin coregulated pilus outer membrane protein TcpC [Vibrio
           fischeri ES114]
          Length = 484

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 81/233 (34%), Gaps = 16/233 (6%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
           L +     +  S   ++ + L    + QV+++  I  + +  L Q+  +  +    +  +
Sbjct: 221 LVKITARPWIISEVDQLFDRLKAESQMQVSVQYRIISLSKSKLSQLAAKFGLDSKGNDFT 280

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ---- 283
            +          + GG  S          + V+  L +      ++E     +  +    
Sbjct: 281 ITSELVDSVALNAAGGGLSFAKRSVSGRLDAVVKYLAQD----VVSEGHFVGLPNRIMPI 336

Query: 284 -----SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEV 336
                S+  +   +   + V  ST +   +    G+ +   P VL  GRI L      + 
Sbjct: 337 NLTTTSSYISEVEKVDNENVDKSTTSLKTSEIKTGLSMLILPKVLEDGRIQLTSGFTKKQ 396

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
              +  V+   +P+    +  +TV L SG   ++  L K +     +   LL 
Sbjct: 397 LIAMDTVSGVQLPTVDENETLSTVTLDSGDVELIT-LYKGNSNNSAQAAQLLG 448


>gi|330983953|gb|EGH82056.1| putative lipoprotein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 561

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 86/260 (33%), Gaps = 28/260 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           + +   N     Q+ ++  + E+  D   +   Q S   S  G       D      S  
Sbjct: 307 RYIKTQNAIANKQIAIRADVYEINSDENGEFDPQLSALYSFGGFKLGMQDDT--FTFSPN 364

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D +        S       L     +  ++  T+ A +G+   F    +  Y       
Sbjct: 365 RDSTTMNHKFSDSSSAAFKLLRTNKNVAQVSSSTIYAQNGEPTPFQQLDEIGYLAEVQIE 424

Query: 303 GATSVTTHDY---------------GVVLHFTPTVLSPGRIGLRIQTE----VSEPVIGV 343
            ++S  +                  G  +   P V S GR+ ++   +     S    G+
Sbjct: 425 TSSSSESSSSDASNLATLKPGKTSQGYSMTIIPRVTSDGRVMMKFAVDSSRLNSIDSYGL 484

Query: 344 NAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           + G    +PS    K +  V + SG  +++AG+ +          P L +   L  L  +
Sbjct: 485 DGGAQIQVPSRSTNKNNQLVTVKSGEPLMIAGIERTANNATITS-P-LGRKSWL--LGGS 540

Query: 401 SRFNREETEIFIAATPFLVK 420
               +++    I  TP+++K
Sbjct: 541 QSGGKKKIMTMIVLTPYIMK 560


>gi|281355620|ref|ZP_06242114.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281318500|gb|EFB02520.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 496

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 105/339 (30%), Gaps = 73/339 (21%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE--------------DQVTLKV 200
           + +Q  V +    L       Y N+ +  +    ++A                 QV L++
Sbjct: 141 RAAQDIVNIINGALRTGIGAAYLNAETNTIYWKDDVASAKAILAWVQRLDRPVPQVNLRL 200

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------------- 241
              EVR   L+ IG  +    +  G +   A    GK  S                    
Sbjct: 201 NYYEVRESKLRDIGVDYLAWKNGPGLNLFAAGYDAGKVFSNEAVLQLLGGAKQFADLAKN 260

Query: 242 -GGDFSVKGVLDRFSFE-TVLHALERATAIRTLAEPTLT------------AISGQSASF 287
               +S  G      F+ + +  L+++   R ++   LT                  A  
Sbjct: 261 FSTSWSYGGFFTAPQFDLSFVRLLQQSGNARLVSNADLTFLNTPLYGDGRDVTRTYYAEL 320

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT-PTV------------------------ 322
           T   Q+L K     T   +       V L  T P +                        
Sbjct: 321 TPSYQNLKKDDDDRTDVVADQAETPAVALKITNPVICFGAQTGEVDSVGMVPATGDFYEN 380

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
              G +       V+  V   N GD  S   R  D  + L      +L   +K+   +  
Sbjct: 381 NRTGGVIFSYNLGVNSVVERNNRGDELSNYAR-IDGALTLGFKQEKLLGSYVKETDVEQT 439

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            GIP LS+IP+L  LF  +   +E++ I + A   LV P
Sbjct: 440 IGIPFLSRIPVLKYLFGTTTTLKEKSYIIVTAEARLVHP 478


>gi|221067014|ref|ZP_03543119.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
 gi|220712037|gb|EED67405.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
          Length = 596

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 47/286 (16%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSS 223
              + A    ++V+   N +   QV +++ I  +      + G    +         G++
Sbjct: 319 TTTKEAMQRIRQVVKSENESLTRQVRIQMDIYSITTKDGDEKGVNWGVVLNSLTSKWGAT 378

Query: 224 SGPSKSFAADFGGKF------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP-T 276
                S   D  G+F      ++ GG+ +   V      +  + AL           P  
Sbjct: 379 IDSPTSLVGDTAGQFGMTILSLANGGNPNSGTVARWGGSQAAIQALNEYG-TNIQHRPIE 437

Query: 277 LTAISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVV----LHFTPTVLSPGR 327
           + A++ Q A  T+     Y      + S++ G+ SV      V         P +L  G 
Sbjct: 438 MQAMNRQWARKTNLNDRSYVSETLPSTSTAAGSGSVGMKTANVTTGDRFMIQPAILDNGS 497

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKA----------DTTVELPSGGTIVLAGLLK-- 375
           + LR    ++  V            + +            +TV L +G  +VL G+ +  
Sbjct: 498 VQLRFGISMTNLVAMTETTSGQGTSISRVQNPERSGIDDQSTVMLKAGQVMVLTGMARYK 557

Query: 376 --DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             D+ ++L EG  LL+          +   + E  E  +   P L+
Sbjct: 558 AKDNRRRLAEGWSLLAG--------GSDAQSLEREEFLVVVRPVLM 595


>gi|91977981|ref|YP_570640.1| hypothetical protein RPD_3516 [Rhodopseudomonas palustris BisB5]
 gi|91684437|gb|ABE40739.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 161

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 39  ISDVEIGKGK-KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           +S   +  G+  +S+ +++  ++++P ++  ++V +P  ADV +     + + GK  G  
Sbjct: 23  MSSAAMAAGEDTVSVNVDQAKLIRLPQNISTLVVGNPLIADVTLQPGGMVVVTGKGYGAT 82

Query: 98  NVILIGHDGKQMLNLDILIE 117
           NVI +   G  + +  I +E
Sbjct: 83  NVIAMDRKGAVIADRLIQVE 102


>gi|254293210|ref|YP_003059233.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814]
 gi|254041741|gb|ACT58536.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814]
          Length = 166

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 37/77 (48%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                +  +I + +++  +L +   +  ++V +P  A V VH   T+ L G + G  N+I
Sbjct: 58  AANPAQENEIDVYIDQTQLLHLGTPMGSIIVGNPDVATVAVHDNHTLLLTGLSFGTTNLI 117

Query: 101 LIGHDGKQMLNLDILIE 117
           ++   G+ +    +++ 
Sbjct: 118 VLDSVGRPIHKSQLMVS 134


>gi|289827429|ref|ZP_06546041.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 389

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 5/116 (4%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
              G       + D  +F   L+ALE+++    L++P++  ++   A         
Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFY 363


>gi|262064151|gb|ACY07135.1| IV [Enterobacteria phage f1]
          Length = 294

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 10/135 (7%)

Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           LS  G N    S+ K ++N L           DQ+ ++  I EV++     + F  +   
Sbjct: 164 LSIDGSNLLVVSAPKDILNNLPQFLSTVDLPTDQILIEGLIFEVQQGDT--LDFSFAAGS 221

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                +     D     +S  G     G+ +       + AL+  +  + L+ P +  +S
Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279

Query: 282 GQSASFTSGGQHLYK 296
           GQ  S + G    + 
Sbjct: 280 GQKGSISVGQNVPFI 294


>gi|54303276|ref|YP_133269.1| hypothetical protein PBPRB1609 [Photobacterium profundum SS9]
 gi|46916706|emb|CAG23469.1| Hypothetical protein PBPRB1609 [Photobacterium profundum SS9]
          Length = 488

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 76/256 (29%), Gaps = 28/256 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVS 240
           + +++        QV + + I E R ++ K  G    I      G  K            
Sbjct: 244 QALIDSYQSELNKQVLIDIRILEFRSNLGKDRGVDWQILKEVGDGTLKFLIPGTTTSSAG 303

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                +  G          + ALE+   + T    +   +S Q A  +      +    S
Sbjct: 304 NPAGLAFTGTGKWDGTTAFIKALEQQGTVSTETPISFRTLSSQPARISQTLVTPFLEDFS 363

Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGL----RIQTEVSEPVIGVNAGDMP 349
           +    + TT          GV +  +  V   G + L    ++    S+    V    + 
Sbjct: 364 TVITDNTTTPTTTRGSVTEGVDMTISANVQK-GFVWLRTAGKLTKIASDTTEKVADVALR 422

Query: 350 SYRVRKADTTVE--LPSGGTIVLAGLLKDDIQQLKE---GIPLLSKIPILGALFRNSRFN 404
               R AD      L  G T+V+  + +      K    GI  L               N
Sbjct: 423 FISTRSADLNFTNKLRYGQTVVIGSIKQQTTGANKSTSFGIDGLG----------MQSTN 472

Query: 405 REETEIFIAATPFLVK 420
            +  E  I  TP  V+
Sbjct: 473 NQTVETLILLTPRRVQ 488


>gi|92116017|ref|YP_575746.1| hypothetical protein Nham_0395 [Nitrobacter hamburgensis X14]
 gi|91798911|gb|ABE61286.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 161

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVIN-ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
           F F    S A +  +  A A ++   + +       IS+ +++  ++++P  +  ++V +
Sbjct: 3   FKFLRGRSRASVVGLSLATAILLGPTAALAEVTSDPISVNVDQAKLVKLPGHIATIVVGN 62

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
           P  ADV +     + + GK  G  NVI +   G  +++  I +E
Sbjct: 63  PLIADVTLQPGGLVVVTGKGYGATNVIAMDRAGSILVDRVIQVE 106


>gi|197105562|ref|YP_002130939.1| hypothetical protein PHZ_c2099 [Phenylobacterium zucineum HLK1]
 gi|196478982|gb|ACG78510.1| hypothetical protein PHZ_c2099 [Phenylobacterium zucineum HLK1]
          Length = 489

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 17/208 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           E  + ++  +    R      G     + +           +GG+     G  +V     
Sbjct: 219 ERNILIEAFLIRDTRSANFNEGVNLLESLALQFEGTLVNYSYGGEDEGTDGQVTVTLPAV 278

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
            +S       L R +     A P + A  G+++ F  GG  L   +S  +        D 
Sbjct: 279 TYSLNLASRDLSRVSLE---ASPVVLARQGKTSKFLEGGSVLIVPLSDDSDPVE---RDV 332

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGT 367
           G+ L  TP  +    + L +  E+S               +      + + +  +P G  
Sbjct: 333 GISLEVTPERIGEHDVDLTVALELSNITGQSVNNAGRGASLLQTDKSRVEASARVPFGKA 392

Query: 368 IVLAGLLKDDIQQLKEG------IPLLS 389
           +V+        ++ + G      +P LS
Sbjct: 393 VVVGSTGSLTRRKTRTGSLTAAPVPGLS 420


>gi|303328014|ref|ZP_07358453.1| putative type IVB pilus formation outer membrane protein, R64 PilN
           family [Desulfovibrio sp. 3_1_syn3]
 gi|302861840|gb|EFL84775.1| putative type IVB pilus formation outer membrane protein, R64 PilN
           family [Desulfovibrio sp. 3_1_syn3]
          Length = 531

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 79/247 (31%), Gaps = 29/247 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTI--AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
             +  +N     QV L V +   EV  +    + FQ      +        A  G    S
Sbjct: 288 NYIAEINKRLSRQVALTVHVWALEVTDENEAGLDFQVLFANDNVSIVAGSLASLGSP--S 345

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                 V G L   +   VL AL+       +       +S Q     +  +  Y   SS
Sbjct: 346 SASATIVSGKLK--NSTGVLKALKEWGNATQVTSGGGLILSNQPVPIQAIKRIAYLAGSS 403

Query: 301 ST-----GATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGD 347
           S+       T +T  +   G  +   P +L   R+ L+    +S      E         
Sbjct: 404 SSQSDYGQTTEITPGEVTTGFAMTIIPHILDRRRVLLQYSINLSSLDELTEFSTSDLTVQ 463

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P    R       +  G T+VLAG  +D  Q+L   + LL+        F        +
Sbjct: 464 LPKTSTRAFSQRSTMQMGQTLVLAG-FQDQSQKLANSLGLLN--------FG-RGAKYGK 513

Query: 408 TEIFIAA 414
           T + I  
Sbjct: 514 TLLVITI 520


>gi|90425192|ref|YP_533562.1| hypothetical protein RPC_3708 [Rhodopseudomonas palustris BisB18]
 gi|90107206|gb|ABD89243.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 165

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 38/74 (51%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I++ +++  +++ P  +  ++V +P  ADV +     + + GK  G  NVI +   G+ +
Sbjct: 38  IAVNVDQAKLVRFPARIATIVVGNPLIADVTLQPGGIIVVTGKGYGATNVIAMDRAGEVL 97

Query: 110 LNLDILIERDIAHL 123
           L+  I +E     +
Sbjct: 98  LDRVIQVEGPTDQV 111


>gi|325275755|ref|ZP_08141633.1| type II and III secretion system protein [Pseudomonas sp. TJI-51]
 gi|324099115|gb|EGB97083.1| type II and III secretion system protein [Pseudomonas sp. TJI-51]
          Length = 76

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFN 446
           +PILGA FRNS   R+ETE+ +  TP LV+P+A+       P +H         + FF  
Sbjct: 5   LPILGAFFRNSTMRRDETELLMIVTPHLVQPLAVNAKLPPLPGEHLRNYDPSWGRLFFLE 64

Query: 447 RVN 449
             N
Sbjct: 65  NGN 67


>gi|330947449|gb|EGH48078.1| type II and III secretion system protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 134

 Score = 60.4 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 15/137 (10%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + I       ++  V +  + V DP  ADV V+      L G   G  ++++        
Sbjct: 8   VEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACASAP 67

Query: 110 LNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
               + +  R    +  ++    AD+ +                 +Q   R +E+S T L
Sbjct: 68  RQSMVFVRGRATTAMVESVTAPSADAQL--------------PSQVQTDIRFIEVSRTKL 113

Query: 169 SQSGRNQYANSSSKKVM 185
            ++  + +   SS  + 
Sbjct: 114 KEASTSIFGKGSSNFLF 130


>gi|299531109|ref|ZP_07044522.1| hypothetical protein CTS44_09997 [Comamonas testosteroni S44]
 gi|298721066|gb|EFI62010.1| hypothetical protein CTS44_09997 [Comamonas testosteroni S44]
          Length = 596

 Score = 60.4 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 96/286 (33%), Gaps = 47/286 (16%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSS 223
              + A    ++V+   N +   QV +++ I  +      + G    +         G++
Sbjct: 319 TTTKEAMQRIRQVVKSENESLTRQVRIQMDIYSITTKDGDEKGVNWGVVLNSLTSKWGAT 378

Query: 224 SGPSKSFAADFGGKF------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP-T 276
                S   D  G+       ++ GG  S   V      +  + AL           P  
Sbjct: 379 IDSPTSLVGDTAGQIGLTILSLANGGSPSSGTVGRWGGTQAAIQALNEYG-TNIQHRPIE 437

Query: 277 LTAISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVV----LHFTPTVLSPGR 327
           + A++ Q A  T+     Y      + S++ G+ SV      V         P +L  G 
Sbjct: 438 MQAMNRQWARKTNLNDRSYVSETLPSTSTAAGSGSVGMKTANVTTGDRFMIQPAILDNGS 497

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKA----------DTTVELPSGGTIVLAGLLK-- 375
           + LR    ++  V            + +            +TV L +G  +VL G+ +  
Sbjct: 498 VQLRFGISMTNLVAMTETTSGQGTSISRVQNPERSGIDDQSTVMLKAGQVMVLTGMARYK 557

Query: 376 --DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             D+ ++L EG  LL+          +   + E  E  +   P L+
Sbjct: 558 AKDNRRRLAEGWSLLAG--------GSDAQSLEREEFLVVVRPVLM 595


>gi|254473697|ref|ZP_05087092.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
 gi|211957083|gb|EEA92288.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
          Length = 173

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 34  AAVINISDVEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
           A +  IS   I      + +  ++  + ++    + +++ +P+ ADV VH   T+ + GK
Sbjct: 28  AMIAGISATSIAPAYADVEVVADQAKVFRLEEPAETIILGNPSIADVTVHDRLTIVITGK 87

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAH 122
           + G  N++++    + ++   I +  ++A 
Sbjct: 88  SYGTTNLVVLNDASEPVVEELITVTAEMAG 117


>gi|170749896|ref|YP_001756156.1| hypothetical protein Mrad2831_3496 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656418|gb|ACB25473.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 164

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ ++   +L++P     V+V +P  A+V       + L GK+ G  N+I + + G  +
Sbjct: 33  VTVLVDNAKVLRLPEKTSTVIVGNPIIAEVTPQKNGVLVLTGKSFGSTNLIALDNGGAMI 92

Query: 110 LNLDILIERDI-------AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
               I +E            L+             V+ + D+    G      D++R + 
Sbjct: 93  AETTIRVEASRDSTITVQRGLDRESLSCTPGCQPSVQ-LGDSASYFGATSGQADARRKLA 151


>gi|331013472|gb|EGH93528.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 234

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 61/198 (30%), Gaps = 19/198 (9%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S+ +  +   N A   QV   V + E       Q+    +   +S       +       
Sbjct: 37  SNIETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPG 96

Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           +S        G++D  +        ++ A+     I  +  P++T ++ Q A    G   
Sbjct: 97  ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 156

Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339
            Y     +    SV         T   G  +   P ++    + L +   +S        
Sbjct: 157 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 216

Query: 340 VIGVNAGDMPSYRVRKAD 357
               ++  +P+Y  +   
Sbjct: 217 TSNGSSVQIPNYDAKSLS 234


>gi|28173601|gb|AAO32809.1| XpsD [Xanthomonas oryzae pv. oryzae]
          Length = 65

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
           IP LSK+P++GALF +   N    E+ +  TP +V+ P   R+L+
Sbjct: 1   IPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVRNPQEARNLT 45


>gi|283851709|ref|ZP_06368987.1| type IVB pilus formation outer membrane protein [Desulfovibrio sp.
           FW1012B]
 gi|283572829|gb|EFC20811.1| type IVB pilus formation outer membrane protein [Desulfovibrio sp.
           FW1012B]
          Length = 468

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 77/246 (31%), Gaps = 25/246 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
             +  LN+    QV L V +  +      + G         S  + +  +      ++  
Sbjct: 229 TYVEDLNVRLSRQVALNVQVWSLNVTDNAEAGINLQALFQDSNLTVAAGSLSEVGAINTA 288

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-----KT 297
               + G L       VL AL +      +       +SGQ     +  +H Y     K+
Sbjct: 289 TATILSGKLK--DSAGVLKALGQWGKASQVTSAGGLVMSGQPVPVMAVQRHAYLAGVGKS 346

Query: 298 VSSSTGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMP 349
            +  +  T VT  +   G  +   P +L   R+ L+    +S      E        ++P
Sbjct: 347 TTDYSQTTEVTPGEVTTGFAMTVIPHILDQRRVILQYNLNLSSLDEMKEFTTSDVTIELP 406

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               +       +  G T+VL G  K+     K           LG +  +   +   T 
Sbjct: 407 QVSTQAFSQRSTMKLGQTLVLCGFEKESNSNKKT----------LGFINASRASDYGRTL 456

Query: 410 IFIAAT 415
           + I   
Sbjct: 457 LVITIR 462


>gi|213621880|ref|ZP_03374663.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 52

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            +  +   L +G +++L G  +      +  IPLL  IP++G LFRN    
Sbjct: 1   SEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQ 51


>gi|254418061|ref|ZP_05031785.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3]
 gi|196184238|gb|EDX79214.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3]
          Length = 138

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 36/77 (46%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
           +   +++ +++   +Q+      V+V +P  ADV V    T+++ GK  G   V+ +   
Sbjct: 26  QSGALNVEIDRSARVQLNGAASSVIVGNPQIADVTVVDANTLFIVGKGYGVTEVVAVDGV 85

Query: 106 GKQMLNLDILIERDIAH 122
           G+ +   +I++      
Sbjct: 86  GRTLFQREIVVTGGSTG 102


>gi|37522852|ref|NP_926229.1| hypothetical protein gll3283 [Gloeobacter violaceus PCC 7421]
 gi|35213854|dbj|BAC91224.1| gll3283 [Gloeobacter violaceus PCC 7421]
          Length = 234

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 65/215 (30%), Gaps = 26/215 (12%)

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            +QI F   I        ++ +    G   + G   S +   +       +    RA   
Sbjct: 44  SQQIVFSIQIIELDGTGLQTLSKAIYGTQPTTGTPASAE---NANRLRRAIFEQVRAGRG 100

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLSPGRI 328
           R + +  LT  SG+ A F S     +           + +T   G  L F P VL  G I
Sbjct: 101 RLVVDTELTVGSGERAGFDSQLDMNFTLAPQDRSKPPTFSTVRAGNRLEFEPAVLPDGNI 160

Query: 329 GLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
             +I+ + S       N G           +T+      T+    L       L   +P 
Sbjct: 161 LTKIRVDASVAAARDRNTGRPIDITRSSIYSTLTFQPNQTVAFGNL-----TSLGTSVP- 214

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
              IP               TE  I  TP LV   
Sbjct: 215 ---IP------------ANRTEQIILITPRLVSAT 234


>gi|220923702|ref|YP_002499004.1| hypothetical protein Mnod_3797 [Methylobacterium nodulans ORS 2060]
 gi|219948309|gb|ACL58701.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
          Length = 151

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 35/75 (46%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
                  +++   +V I++     + V+V DP  ADV V +  T+ +  K  G  +++L+
Sbjct: 15  SASAADSLALRPGQVEIVKTSRGARTVVVGDPDIADVTVANESTIVVTAKENGVTDLVLL 74

Query: 103 GHDGKQMLNLDILIE 117
              G++ L   + I 
Sbjct: 75  DESGREFLRKQLQIG 89


>gi|304392391|ref|ZP_07374332.1| PilQ [Ahrensia sp. R2A130]
 gi|303295495|gb|EFL89854.1| PilQ [Ahrensia sp. R2A130]
          Length = 171

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 69/168 (41%), Gaps = 19/168 (11%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG--KKISIGLNKVIILQVPVD 65
           F    S      + ++A         A V+ ++ +  G    K + + +++  ++++   
Sbjct: 3   FMAKFSPTSAIRSFALAGAFFAPIIAATVLPVAALADGHSAKKHLEVVVDRARVVRIAKP 62

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
              V+V +P+  D  +   RT+ L G+  G  N+I++  DG  +++  ++++ +  +L  
Sbjct: 63  ADTVIVGNPSIVDATIQDARTLVLTGRLFGVTNIIVLDSDGDPIVDETVVVKGEETNLVH 122

Query: 126 TLRRF----------------IADSNIRVEMVSDTVVLH-GMVRTIQD 156
             R+                 + D   R E ++  +    G+  ++ D
Sbjct: 123 VYRQANRETLACAPVCQTTLTLGDEKERFETINGQITARNGLAESVGD 170


>gi|289675698|ref|ZP_06496588.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae FF5]
          Length = 133

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 15/137 (10%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + I       ++  V +  + V DP  ADV V+      L G   G  ++++        
Sbjct: 11  VEIDQGIQQEVRSVVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACASAP 70

Query: 110 LNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
               + +  R    +  ++    AD+ +                 +Q   R +E+S T L
Sbjct: 71  RQSMVFVRGRATTTMVESVTAPSADAQL--------------PSQVQTDIRFIEVSRTKL 116

Query: 169 SQSGRNQYANSSSKKVM 185
            ++  + +   SS  + 
Sbjct: 117 KEASTSIFGKGSSNFLF 133


>gi|163756987|ref|ZP_02164094.1| type II general secretion pathway (GSP) D protein [Kordia algicida
           OT-1]
 gi|161323106|gb|EDP94448.1| type II general secretion pathway (GSP) D protein [Kordia algicida
           OT-1]
          Length = 612

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 58/164 (35%), Gaps = 11/164 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVRRDILK 211
             D    +++   +   S      +SS K+  N +    +    V ++V + +V +  + 
Sbjct: 435 PADLIADLQIEADYELNSFYVSGPSSSVKRFRNFVEKIDKPVPVVLIEVMLIDVSKLSVV 494

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---------TVLHA 262
           + G    I    +  S S          +   +  + G     SF            + A
Sbjct: 495 ETGISWGIGDEPTQTSGSLFPTTNLTLGANTVNRVIGGFDGFGSFNLGKVVPEFFANISA 554

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +E+   I+  + P ++ ++G  A+ ++G    Y     +   T+
Sbjct: 555 MEQDGDIKIRSTPKISTLNGHRATLSNGTTSYYAVTQRNIYGTN 598


>gi|220922775|ref|YP_002498077.1| hypothetical protein Mnod_2823 [Methylobacterium nodulans ORS 2060]
 gi|219947382|gb|ACL57774.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
          Length = 161

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 35/74 (47%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + ++   I+++P     V+V +P  ADV +     + L GK+ G  N+I +   G  +
Sbjct: 40  VVVSVDNAKIIRLPERTATVVVGNPIIADVTLQRNGIVILTGKSFGSTNLIALDAAGTML 99

Query: 110 LNLDILIERDIAHL 123
               I ++   + +
Sbjct: 100 AESFISVQAATSSV 113


>gi|170740625|ref|YP_001769280.1| hypothetical protein M446_2388 [Methylobacterium sp. 4-46]
 gi|168194899|gb|ACA16846.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
          Length = 158

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 34/75 (45%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
            + + ++   I+++P     V+V +P  ADV +     + L GK+ G  N+I +   G  
Sbjct: 36  TVVVSVDNAKIIRLPERTATVVVGNPIIADVSLQRNGLVILTGKSFGTTNLIALDGSGAM 95

Query: 109 MLNLDILIERDIAHL 123
           +    I ++     +
Sbjct: 96  LAESFISVQAATTSV 110


>gi|166219|gb|AAA32222.1| gene IV protein [Enterobacteria phage f1]
          Length = 51

 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           GL          G+P LSKIP++G LF +   + EE+ +++     +V+ +
Sbjct: 1   GLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 51


>gi|308094760|ref|ZP_07663039.1| fimbrial assembly protein [Vibrio parahaemolyticus AN-5034]
 gi|308089697|gb|EFO39392.1| fimbrial assembly protein [Vibrio parahaemolyticus AN-5034]
          Length = 73

 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 41/70 (58%)

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR S  N  ++E
Sbjct: 2   AIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSYENVGKSE 61

Query: 410 IFIAATPFLV 419
           + I  TP +V
Sbjct: 62  LLIFVTPKVV 71


>gi|240142222|ref|YP_002966732.1| hypothetical protein MexAM1_META2p0544 [Methylobacterium extorquens
           AM1]
 gi|240012166|gb|ACS43391.1| Hypothetical protein MexAM1_META2p0544 [Methylobacterium extorquens
           AM1]
          Length = 575

 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 66/244 (27%), Gaps = 55/244 (22%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
            I  +   P +       G  VS+     + G     S    +  L      +      +
Sbjct: 318 GIGLTQIDPGRVMDLTKDGLVVSQTSLGRLGGAFGATSITGAIDFLSTFGTTKVDQNVQM 377

Query: 278 TAISGQSASFTSGGQHLYK-----------------TVSSSTGATSVTTH-DYGVVLHFT 319
             +SG      SG Q  Y                          +S+T   + G+ +  T
Sbjct: 378 KTLSGTEVKLRSGQQVPYVRGVQLAGLGAGGYGNGYGGGYGGLGSSLTDKVETGLTMEVT 437

Query: 320 PTVLSPGRI-GLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           P   S   +  + +  ++ E +          +     P  + ++    V + +G T+V+
Sbjct: 438 PYFDSDAEVVTMEVDVKLKEILSFVELNAGNQIGTFTQPLTQDQELTNIVRMQAGRTVVI 497

Query: 371 AGLLKDDIQ----------------QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            GL  D                       G+            F N     +   +FI  
Sbjct: 498 GGLQSDSESYNGTEPTALRNATATRAGGSGV------------FGNRSQKVKRNALFIIL 545

Query: 415 TPFL 418
            P +
Sbjct: 546 RPAV 549


>gi|332765291|gb|EGJ95516.1| hypothetical protein SFK671_5251 [Shigella flexneri K-671]
          Length = 422

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 11/134 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  + L + I ++ +  L  +G            + SF   FG  F       +    LD
Sbjct: 298 KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSASISTLD 348

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F   + AL +      ++ P +       A F +        V      +S+    Y
Sbjct: 349 GNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSLEHVTY 406

Query: 313 GVVLHFTPTVLSPG 326
           G +++  P     G
Sbjct: 407 GTLINVIPRFSVSG 420


>gi|281355410|ref|ZP_06241904.1| hypothetical protein Vvad_PD3516 [Victivallis vadensis ATCC
           BAA-548]
 gi|281318290|gb|EFB02310.1| hypothetical protein Vvad_PD3516 [Victivallis vadensis ATCC
           BAA-548]
          Length = 355

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 101/317 (31%), Gaps = 38/317 (11%)

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ-- 155
           NV++      + +  D+    D+A +   +   +    +     +    + G    I+  
Sbjct: 15  NVVVFDDLKDKPIFADVS-GCDLADVLDLITWLLGVEWVE---RAGQYYIGGNQSKIEVL 70

Query: 156 -------DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL-KVTIAEVRR 207
                    ++    +   ++     Q      KK+ + L    E  V L ++ + EV  
Sbjct: 71  PSLGIDSKLEQVFPNAVKLVNDKIIAQGTERELKKISDALTSTLERDVALCQLKVIEVVY 130

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           D   Q+G     +   +   ++   +                     S    +   +   
Sbjct: 131 DDRFQVGLDWEKSFEYAVSWENMVKNV------------HPVTHAAMSLAASVQLDQAVI 178

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVL 323
           + R + +  +  +SG       G +      S+S     V     T   G+++  +    
Sbjct: 179 STRYVIDTQVGILSGSKVELNIGDEIDRPIYSTSEYGNRVLSGYNTQKTGLLIGLSAYHA 238

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD-IQQLK 382
               +      E S PV  +         + K  T V++      +LA +        ++
Sbjct: 239 GSAWV-FDASVEHSRPVTDLQ------KTLSKVTTQVKIEDSRPFLLANVSSSGGETNIE 291

Query: 383 EGIPLLSKIPILGALFR 399
           +G+P L ++P +G LF 
Sbjct: 292 QGVPFLCRLPWIGFLFG 308


>gi|166216|gb|AAA32221.1| gene IV [Enterobacteria phage f1]
          Length = 60

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           + +             R   TTV L  G T++L GL          G+P LSKIP++G
Sbjct: 2   DSLSSSTQASDVITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIG 59


>gi|315121901|ref|YP_004062390.1| hypothetical protein CKC_00755 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495303|gb|ADR51902.1| hypothetical protein CKC_00755 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 206

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH-SPRTMYLFGKNVGQANVILIGHDG 106
           K+I I + + I+L+      +V++ +    DV+     +++ + GK  G  N+I++G   
Sbjct: 105 KRIRIAIGQSIVLKFDSLPSEVIIGNDQITDVLALEKEKSIVITGKKSGLTNIIVLGAGN 164

Query: 107 KQMLNLDI 114
           K +L  DI
Sbjct: 165 KVLLETDI 172


>gi|294784350|ref|ZP_06749641.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27]
 gi|294487922|gb|EFG35277.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27]
          Length = 407

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 9/141 (6%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              QV +   I ++  ++ +++GF         S    S  A   GK    G   +V  V
Sbjct: 266 NPKQVKITSQILDISNNLFEELGFNWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIV 325

Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
               +        ++ LE    +   + PTL   SG+   F    + +    +       
Sbjct: 326 RQFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 385

Query: 305 --TSVTTHDYGVVLHFTPTVL 323
             +     + G+++   P ++
Sbjct: 386 RYSEPIFKEAGLIMKVKPFIV 406


>gi|254513594|ref|ZP_05125658.1| Bacterial type II and III secretion system protein
           [Rhodobacteraceae bacterium KLH11]
 gi|221532103|gb|EEE35100.1| Bacterial type II and III secretion system protein
           [Rhodobacteraceae bacterium KLH11]
          Length = 499

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 28/256 (10%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            + + KV+         ++ ++V +  +              +G+    S +  A  G  
Sbjct: 251 QARAAKVIADFEEVYSTRIAIEVAVFFIDTSKTDTFAVGLEGSGTHGAISGAVGALTGSG 310

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +   DF                AL + +++      +  A SG  A         Y +
Sbjct: 311 VATLTNDFG----------SINFQALAKNSSVVDYRLASTIAQSGTIAPIALPALVNYVS 360

Query: 298 VSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ------TEVSEPVIGV 343
               T              T D G+ +H  P ++   RI L +       TE+ +   G 
Sbjct: 361 SIGETKNEDGTTTTTVETDTIDTGISIHALPRLVRDNRIQLSLTLVQNDLTELEDFDTGD 420

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +P    R       L  G T++L+G  +D   +   G   ++K   LG      + 
Sbjct: 421 GTVQLPKIDQRAIQNDSLLAPGETLILSGYEQDKATRSNTGT-GIAKFIGLG---GRIKG 476

Query: 404 NREETEIFIAATPFLV 419
              +  + +   P ++
Sbjct: 477 EVGKVRMVVFVRPAII 492


>gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254547834|gb|ACT57211.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 135

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH-SPRTMYLFGKNVGQANVILIGH 104
              +I I + + +ILQ  V  + V+V D    DV+     +T+ + GKN+G  N+I++GH
Sbjct: 31  NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90

Query: 105 DGKQMLNLDIL 115
           +   +L+ +I 
Sbjct: 91  NNDILLDTEIA 101


>gi|320174025|gb|EFW49195.1| General secretion pathway protein D [Shigella dysenteriae CDC
           74-1112]
          Length = 493

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 37/179 (20%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                                   +  ++ A++  ++   L+ P++T +  Q A F  G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG 493


>gi|320184381|gb|EFW59193.1| General secretion pathway protein D [Shigella flexneri CDC 796-83]
          Length = 493

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 37/179 (20%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                                   +  ++ A++  ++   L+ P++T +  Q A F  G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG 493


>gi|332091465|gb|EGI96550.1| general secretion pathway protein D [Shigella boydii 3594-74]
          Length = 493

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 37/179 (20%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252
                 G Q +            +  P  +  A         G   +SE G  ++    +
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                                   +  ++ A++  ++   L+ P++T +  Q A F  G
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG 493


>gi|48411|emb|CAA45458.1| tcpC (lipoprotein) [Vibrio cholerae]
 gi|383775|prf||1904214A outer membrane lipoprotein
          Length = 489

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 17/218 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
              + L    + Q+ +   +  +  + L Q+  +  I  +      S   D        G
Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVD-AISLSQVG 301

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASFTSGGQHLYKTVSS 300
           G             + V++ L +      + E     I       + T+  +++    ++
Sbjct: 302 GGLGASYRSASARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETT 357

Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351
               T   T          G  +   P +L  GRI +      +    +       +P+ 
Sbjct: 358 KDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTV 417

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
              ++  TV +  G  + LA L KD+  Q   G+ LL 
Sbjct: 418 DENESMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454


>gi|153818067|ref|ZP_01970734.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae NCTC 8457]
 gi|126511413|gb|EAZ74007.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae NCTC 8457]
          Length = 489

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 17/218 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
              + L    + Q+ +   +  +  + L Q+  +  I  +      S   D        G
Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVD-AISLSQVG 301

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASFTSGGQHLYKTVSS 300
           G             + V++ L +      + E     I       + T+  +++    ++
Sbjct: 302 GGLGASYRSASARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETT 357

Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351
               T   T          G  +   P +L  GRI +      +    +       +P+ 
Sbjct: 358 KDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTV 417

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
              ++  TV +  G  + LA L KD+  Q   G+ LL 
Sbjct: 418 DENESMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454


>gi|147675545|ref|YP_001216312.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae O395]
 gi|262168740|ref|ZP_06036435.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           RC27]
 gi|13377522|gb|AAK20758.1|AF325733_14 toxin-coregulated pilus biosynthesis outer membrane protein C
           (lipoprotein) [Vibrio cholerae]
 gi|146317428|gb|ABQ21967.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae O395]
 gi|227012652|gb|ACP08862.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae O395]
 gi|262022858|gb|EEY41564.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           RC27]
          Length = 489

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 17/218 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
              + L    + Q+ +   +  +  + L Q+  +  I  +      S   D        G
Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVD-AISLSQVG 301

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASFTSGGQHLYKTVSS 300
           G             + V++ L +      + E     I       + T+  +++    ++
Sbjct: 302 GGLGASYRSASARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETT 357

Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351
               T   T          G  +   P +L  GRI +      +    +       +P+ 
Sbjct: 358 KDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTV 417

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
              ++  TV +  G  + LA L KD+  Q   G+ LL 
Sbjct: 418 DENESMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454


>gi|254225078|ref|ZP_04918692.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae V51]
 gi|125622465|gb|EAZ50785.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae V51]
          Length = 489

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 17/218 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
              + L    + Q+ +   +  +  + L Q+  +  I  +      S   D        G
Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVD-AISLSQVG 301

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASFTSGGQHLYKTVSS 300
           G             + V++ L +      + E     I       + T+  +++    ++
Sbjct: 302 GGLGASYRSASARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETT 357

Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351
               T   T          G  +   P +L  GRI +      +    +       +P+ 
Sbjct: 358 KDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTV 417

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
              ++  TV +  G  + LA L KD+  Q   G+ LL 
Sbjct: 418 DENESMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454


>gi|258620016|ref|ZP_05715056.1| Toxin coregulated pilus biosynthesis outer membrane protein C
           [Vibrio mimicus VM573]
 gi|258587749|gb|EEW12458.1| Toxin coregulated pilus biosynthesis outer membrane protein C
           [Vibrio mimicus VM573]
          Length = 489

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 17/218 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
              + L    + Q+ +   +  +  + L Q+  +  I  +      S   D        G
Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVD-AISLSQVG 301

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASFTSGGQHLYKTVSS 300
           G             + V++ L +      + E     I       + T+  +++    ++
Sbjct: 302 GGLGASYRSASARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETT 357

Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351
               T   T          G  +   P +L  GRI +      +    +       +P+ 
Sbjct: 358 KDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTV 417

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
              ++  TV +  G  + LA L KD+  Q   G+ LL 
Sbjct: 418 DENESMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454


>gi|153930563|ref|YP_001393255.1| PilN family type IV pilus biogenesis protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|152958107|gb|ABS45570.1| type IV pilus/secretion system protein, PilN family [Yersinia
           pseudotuberculosis IP 31758]
          Length = 568

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 81/253 (32%), Gaps = 31/253 (12%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGV 250
             QV  KV I  +  ++   +G    I   S       + A+  G       G F +   
Sbjct: 319 SKQVLFKVVIYTITSEVSDNVGIDWDIIFKSLSGKYGINLASSSGLSTDLANGSFEILDT 378

Query: 251 LDR-----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVS 299
                      + +L AL +   +       L   +  +A    G Q  Y       ++ 
Sbjct: 379 ATGKAAQFAGSQFMLQALSKQANVTDTKTLNLMTTNLATAGLLIGKQTTYLQRSSITSIG 438

Query: 300 SSTGATSVTTHD-----YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD---- 347
           S   +  V + +      G  +   P +L+      + + +       +  ++  D    
Sbjct: 439 SGNSSEPVQSLEPGQITTGTNIVILPKILNDNEKMMLTMMLDITSLNKLRKIDTADKKLS 498

Query: 348 --MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P          + L  G TI+++G  +      K+G+   + I I+G    N   + 
Sbjct: 499 IEGPDSDSSSIPQRIWLKPGETILMSGFEQIVKDGSKQGMGDPNNI-IMG---GNMSGSD 554

Query: 406 EETEIFIAATPFL 418
           ++    I  TP L
Sbjct: 555 KKQSFVITITPIL 567


>gi|15640848|ref|NP_230479.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121585745|ref|ZP_01675540.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae 2740-80]
 gi|153822050|ref|ZP_01974717.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae B33]
 gi|227081008|ref|YP_002809559.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae M66-2]
 gi|229505558|ref|ZP_04395068.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae BX
           330286]
 gi|229510771|ref|ZP_04400250.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           B33]
 gi|229517892|ref|ZP_04407336.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           RC9]
 gi|229608577|ref|YP_002879225.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           MJ-1236]
 gi|254847967|ref|ZP_05237317.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae MO10]
 gi|255744631|ref|ZP_05418582.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholera
           CIRS 101]
 gi|262161237|ref|ZP_06030348.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           INDRE 91/1]
 gi|298499040|ref|ZP_07008847.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae MAK 757]
 gi|14548352|sp|P29481|TCPC_VIBCH RecName: Full=Toxin coregulated pilus biosynthesis outer membrane
           protein C; AltName: Full=TCP pilus biosynthesis protein
           tcpC; Flags: Precursor
 gi|13377553|gb|AAK20788.1|AF325734_14 toxin-coregulated pilus biosynthesis outer membrane protein C
           (lipoprotein) [Vibrio cholerae]
 gi|9655282|gb|AAF93994.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121550108|gb|EAX60124.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae 2740-80]
 gi|126520444|gb|EAZ77667.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae B33]
 gi|227008896|gb|ACP05108.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae M66-2]
 gi|229344607|gb|EEO09581.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           RC9]
 gi|229350736|gb|EEO15677.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           B33]
 gi|229357781|gb|EEO22698.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae BX
           330286]
 gi|229371232|gb|ACQ61655.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           MJ-1236]
 gi|254843672|gb|EET22086.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae MO10]
 gi|255737662|gb|EET93056.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholera
           CIRS 101]
 gi|262028987|gb|EEY47640.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           INDRE 91/1]
 gi|297543373|gb|EFH79423.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae MAK 757]
          Length = 489

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 17/218 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
              + L    + Q+ +   +  +  + L Q+  +  I  +      S   D        G
Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVD-AISLSQVG 301

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASFTSGGQHLYKTVSS 300
           G             + V++ L +      + E     I       + T+  +++    ++
Sbjct: 302 GGLGASYRSASARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETT 357

Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351
               T   T          G  +   P +L  GRI +      +    +       +P+ 
Sbjct: 358 KDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTV 417

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
              ++  TV +  G  + LA L KD+  Q   G+ LL 
Sbjct: 418 DENESMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454


>gi|281355403|ref|ZP_06241897.1| hypothetical protein Vvad_PD3509 [Victivallis vadensis ATCC
           BAA-548]
 gi|281318283|gb|EFB02303.1| hypothetical protein Vvad_PD3509 [Victivallis vadensis ATCC
           BAA-548]
          Length = 283

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 81/248 (32%), Gaps = 25/248 (10%)

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL-KVTIAEVRRDILKQIGFQ 216
           ++    +   ++     Q      KK+ + L    E  V L ++ + EV  D   Q+G  
Sbjct: 8   EQVFPNAVKLVNDKIIAQGTERELKKISDALTSTLERDVALCQLKVIEVVYDDRFQVGLD 67

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
              +   +   ++   +                     S    +   +   + R + +  
Sbjct: 68  WEKSFEYAVSWENMVKNV------------HPVTHAAMSLAASVQLDQAVISTRYVIDTQ 115

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVLSPGRIGLRI 332
           +  +SG       G +      S+S     V     T   G+++  +        +    
Sbjct: 116 VGILSGSKVELNIGDEIDRPIYSTSEYGNRVLSGYNTQKTGLLIGLSAYHAGSAWV-FDA 174

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD-IQQLKEGIPLLSKI 391
             E S PV  +         + K  T V++      +LA +        +++G+P L ++
Sbjct: 175 SVEHSRPVTDLQ------KTLSKVTTQVKIEDSRPFLLANVSSSGGETNIEQGVPFLCRL 228

Query: 392 PILGALFR 399
           P +G LF 
Sbjct: 229 PWIGFLFG 236


>gi|116249977|ref|YP_765815.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254625|emb|CAK05699.1| putative pilus subunit transmembrane protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 136

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 12/112 (10%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + ++   +L++   V  V+V +   AD  V   +T+ L G++ G  N++L+  DG  +
Sbjct: 31  LRVYMDHARVLKLDRPVSKVIVGNAAVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 90

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           L+  IL+  D              + +RV   +   VL       Q +Q+A 
Sbjct: 91  LDERILVSID------------EGNTVRVYRQTQRSVLSCTPNCEQHAQQAA 130


>gi|295701132|ref|YP_003610133.1| type II secretory pathway component PulD-like protein [Burkholderia
           sp. CCGE1002]
 gi|295441455|gb|ADG20622.1| type II secretory pathway component PulD-like protein [Burkholderia
           sp. CCGE1002]
          Length = 538

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 93/271 (34%), Gaps = 38/271 (14%)

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAADFG 235
           A     K++   N     QV L+V   ++  +   Q G    +  +   G    +A  F 
Sbjct: 275 AADRMGKLLAQENAVSTRQVMLRVRTLQIALNNGSQAGVNADVVFNYIQGGLARYAVSFT 334

Query: 236 G--KFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTS- 289
                 S GG   +  +     F     V++AL +       +  T   ++G   S  S 
Sbjct: 335 SPTSLSSGGGTVGLSVLQANAPFSGTNAVINALNQYGRTVQDSTQTKMTLNGLPVSIASF 394

Query: 290 GGQHLYKTVSSSTGATSVT----------THDYGVVLHFTPTVLSPGRIGLRI---QTEV 336
                 ++ S S G+ + T          T   G  ++  P V    +I L      +++
Sbjct: 395 QSDDYLRSTSPSAGSLTATSGGVPGLTPGTVTTGDFVNILPAVNDHNQIILSYWADSSKL 454

Query: 337 SEPVIGVNAGDMPSYRV--------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           + P    + G   + +          K D T+ L  G T+VL G + D       G   +
Sbjct: 455 NGPFTSASVGSGQTLQQIQLAHTTGSKEDQTIALSDGQTVVLYGQMTDLANSTTNG--GI 512

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + I  L        +N+ +T   I  T  +V
Sbjct: 513 AGITGL--------WNKSKTFQVIMLTATVV 535


>gi|148553725|ref|YP_001261307.1| TPR repeat-containing protein [Sphingomonas wittichii RW1]
 gi|148498915|gb|ABQ67169.1| Tetratricopeptide TPR_2 repeat protein [Sphingomonas wittichii RW1]
          Length = 465

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 83/276 (30%), Gaps = 31/276 (11%)

Query: 196 VTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           + ++  +    R      G     S+     G   +++ D  G         ++ G+   
Sbjct: 198 ILIEAFLIRDTRSAGLSDGINLLDSLALQFGGTLVNYSYDSAGHETRGDVSVTLPGISYS 257

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +           + +   A P + A  G+++ F  GG  L   ++  +        D G
Sbjct: 258 LNLAAR-----DLSRVSLEASPLVLARQGKTSKFLEGGSVLIVPLADDSDPVE---RDVG 309

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGTI 368
           + +  TP  +    + L +  E+S               +      + +    +P    +
Sbjct: 310 ITVEVTPEQIGEDYVDLAVVLELSNITGQSLSDAGRGASLLQTDKTRVEAAARVPFRKAV 369

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           ++        ++      + + +P L      +  +    ++    +             
Sbjct: 370 LVGSTGSLTRRKSGNRSLVAAPLPGL----STNGSSASRRDVLALISVR----------- 414

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           R DD  +   DA A    R+     P  AS  E  +
Sbjct: 415 RADDQVTPPLDADA-LAKRLFDTALPAPASYGERPS 449


>gi|281356795|ref|ZP_06243286.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316922|gb|EFB00945.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 502

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 92/287 (32%), Gaps = 61/287 (21%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--------AADFGGKFVSEGGDFSVK 248
            L  T+ EVR  IL+ +G  +   G  +GP  +         +   GG         +  
Sbjct: 192 NLSFTVYEVRDSILRDLGIDY--LGWRNGPGLNLFQAGMDALSLSSGGSSAVNAASGAFG 249

Query: 249 GVLDRFSFET-VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL------------- 294
           G      F+   +  L++          +LT  +  SA ++ G                 
Sbjct: 250 GFFFAPQFDASFIRILQQDGLANIANTASLTVANSDSAVYSIGFHPESQAIFKRDNDQLQ 309

Query: 295 -----------YKTVSSSTGAT----SVTTHDYGVVLHFT-PTVLSPGRIGLRI-QTEVS 337
                       K   SSTGA     + +     + L  T P +   G    R  Q    
Sbjct: 310 VGVSGLGMQGGVKPPESSTGAENPLLTGSAPPPPLALSVTAPRICFRGEADARTGQVPYR 369

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPS-------------GGTIVLAG----LL---KDD 377
                     + ++  +     V   +             G   +L+G    L    K+ 
Sbjct: 370 LSDYNTTVNALVTFNYKIQVADVVERNNYGAELAEIDQLSGDCNLLSGEEKILTMWHKES 429

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
             +   G+P LS+IPIL  LF  +  NRE+T  F+     L  P ++
Sbjct: 430 EVEQTIGVPFLSEIPILKHLFSTTTINREKTWYFVTVRTVLAHPESL 476


>gi|217077117|ref|YP_002334833.1| secretin and TonB N terminus short domain protein [Thermosipho
           africanus TCF52B]
 gi|217036970|gb|ACJ75492.1| secretin and TonB N terminus short domain protein [Thermosipho
           africanus TCF52B]
          Length = 360

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 85/268 (31%), Gaps = 23/268 (8%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
               + A ELS+    +       +SS   +     I    Q+   V+I +V++   K  
Sbjct: 106 PLRYKTASELSKVLPKELKEYILYSSSEDSITVFAPIPVASQIANIVSILDVKK---KSY 162

Query: 214 GFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                I   S    KSF             +  G  FS+    +  +   +  +      
Sbjct: 163 TANIKIIDVSESYLKSFLLKINYSQERLNDLLSGAIFSIPLYGNYLNL--LFSSTTENKD 220

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL-SPGR 327
              + +  +  +SG  +S  +  + L   +       S    +  +    TP  L S   
Sbjct: 221 FDLIYDGNIKMLSGVKSSLRTSKKVLVDEIV--DNKISKKAVESNISFELTPYFLKSSAL 278

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I L I  E     IG +          +  T V +      V+        ++   G+  
Sbjct: 279 IDLNINLEN----IGTDRLG------SQVSTKVPIDFSVPKVIGAYSYLKSERADGGLSF 328

Query: 388 LSKIPILGALFRNSRFNREETEIFIAAT 415
           L  +PI+G LF+ +    E+  I     
Sbjct: 329 LMDLPIIGNLFKQNFEKHEKRYILFVLR 356


>gi|327543373|gb|EGF29799.1| type II and III secretion system protein [Rhodopirellula baltica
           WH47]
          Length = 376

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 2/120 (1%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L+  I  V  D   Q G          G  +   +  G     E     +  +   
Sbjct: 255 PQVVLEAIICVVSPDSGFQFGLDWQHAVEMDGVKELSLSASGLALNGELSQAGLDAIFSD 314

Query: 254 F-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTHD 311
           F +    +  L     +   A P + A  G+ A+     +  +      STG  SV    
Sbjct: 315 FGNTSAFVRLLSEKGYLTIRATPHVMAKDGEQANIAINRETFFSVQPPGSTGNNSVFFQQ 374


>gi|157165775|ref|YP_001467405.1| protein yitk [Campylobacter concisus 13826]
 gi|157101562|gb|ABV23530.1| hypothetical protein CCC13826_2274 [Campylobacter concisus 13826]
          Length = 128

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           E ++  ++   P    ++  ++  L  G  +VL+G+ K    + + G+P+L  I +L  L
Sbjct: 49  EDILSQSSSFTPIVSKKELKSSYSLKRGDVLVLSGINKKTNAKQRNGVPVLKDIWLLKYL 108

Query: 398 FRNSRFNREETEIFIAATPFLV 419
           F        E    +  T  ++
Sbjct: 109 FS--VEQDSEINSVLTLTIQII 128


>gi|171911831|ref|ZP_02927301.1| probable penicillin resistance regulatory protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 711

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 84/263 (31%), Gaps = 60/263 (22%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            ++++ L+     QV L+    E+                   GP  +  A    K  + 
Sbjct: 295 DQLLDQLSAHAPLQVLLETRWIELL------------APPEEGGPVSTALATLQEKRTAN 342

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G   + + +L    ++ ++    +   +  ++ P++T   GQ A      +   +   ++
Sbjct: 343 G--RANEAILSDPDYQNIIRLFSQQKGVHLVSNPSVTTRMGQKAVVEVIREVR-RPGEAA 399

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQT------EVSEPVIGVNAGDMPSYR 352
            G         G+   F P   + G+   + +  +        ++E    +  G +P+  
Sbjct: 400 KGLNDDHF--VGIQNSFEPVRTADGKKVQVSMTAKLRRLAGRSIAESNALIKDGILPAGE 457

Query: 353 VRKADT---TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              A T    V L  G T+ +                    I              +   
Sbjct: 458 RILAFTNSAEVSLTDGETVCM-------------------DI----------GTAEDHRR 488

Query: 410 IFIAATPFLVKPVAMRDLSRPDD 432
           + +  T  +VKP     L++P+D
Sbjct: 489 LLLFVTSKIVKPAEA--LTKPED 509


>gi|108763383|ref|YP_628353.1| serine/threonine kinase family protein [Myxococcus xanthus DK 1622]
 gi|108467263|gb|ABF92448.1| serine/threonine kinase family protein [Myxococcus xanthus DK 1622]
          Length = 478

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 2/106 (1%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPP-IKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
            + +R    +           +   P  + +++AA      +       I + +  V  L
Sbjct: 362 AWGRRGILALAGAGSLVVLGVLLWKPSFLFQSDAATPRAESLGRMAASLIVLRVGDVHEL 421

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            VP  +Q + V +P+  +V V     + L GK  G  ++I   H G
Sbjct: 422 AVPG-LQRIAVGEPSLVEVTVPRQGVVRLKGKEEGSTDLITWSHAG 466


>gi|229592009|ref|YP_002874128.1| secretory protein [Pseudomonas fluorescens SBW25]
 gi|229363875|emb|CAY51352.1| secretory protein [Pseudomonas fluorescens SBW25]
          Length = 481

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 78/272 (28%), Gaps = 14/272 (5%)

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
           D+ + +    +   L   +AD           V L GM   I+       L+        
Sbjct: 167 DLRVGKQAFGVVQVLNTDVADRQYGTSDSP--VTLPGMASMIETL-----LATEHQGMLA 219

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVT-LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                  +     +LL      QV+ ++  +AE+     + I     +        K   
Sbjct: 220 DKSLGVIAYPDSNSLLIKGKPAQVSFIQKLVAELDIPK-RSIEVSLWLVDLERDELKKLG 278

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            D+G    +      V   +D       + ALER         P +       A F    
Sbjct: 279 MDWGDD--TNTSTTRVLAPVDDSHLMASIGALERRRRATVATLPVILTQENVPAVFQDNH 336

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
                   S    T      YG  +   P      +I +R++ +    +      +  + 
Sbjct: 337 TFYMPPPGSDR--TDWKPVRYGTQVSVLPRFAEANQIEMRLEVQDGRQMSEAPGREKNTA 394

Query: 352 RVRK-ADTTVELPSGGTIVLAGLLKDDIQQLK 382
             R   ++ V LP G  + L    +    + +
Sbjct: 395 VGRVGVNSVVRLPPGRRLWLGAFNRKSEGRGR 426


>gi|241207153|ref|YP_002978249.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861043|gb|ACS58710.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 136

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 38/70 (54%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + ++   +L++   V  V+V +   AD  V   +T+ L G++ G  N++L+  DG  +
Sbjct: 31  LRVYMDHARVLKLDRPVSKVIVGNAAVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 90

Query: 110 LNLDILIERD 119
           L+  IL+  D
Sbjct: 91  LDERILVSID 100


>gi|312962468|ref|ZP_07776959.1| invasion protein - outer membrane [Pseudomonas fluorescens WH6]
 gi|311283395|gb|EFQ61985.1| invasion protein - outer membrane [Pseudomonas fluorescens WH6]
          Length = 453

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 56/207 (27%), Gaps = 9/207 (4%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            V + GM  TI+       L          +     +     +LL      QV     + 
Sbjct: 200 KVRVPGMASTIEAL-----LVSEHKGPLADSSLGVIAYTDTNSLLIKGKPAQVKFIEQLV 254

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
                  + I     +   S    K    D   K  +   +  +   L+       + AL
Sbjct: 255 AQLDTPKRAIEVSLWLVDVSRDDMKKL--DLARKKKTSASNAHILEPLEDKQLMEQITAL 312

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           ER    R +  P +       A F           +S           YG  +   P + 
Sbjct: 313 ERRRRARVVTLPVILTQENVPAVFEDNHTFYLP--ASDNDPADWKPVPYGAQVSVLPRIA 370

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPS 350
              +I + I+ E    V  V     P+
Sbjct: 371 EANQIEMLIKVEDGRQVREVGRRGKPT 397


>gi|288959939|ref|YP_003450279.1| hypothetical protein AZL_a02040 [Azospirillum sp. B510]
 gi|288912247|dbj|BAI73735.1| hypothetical protein AZL_a02040 [Azospirillum sp. B510]
          Length = 512

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 92/318 (28%), Gaps = 45/318 (14%)

Query: 99  VILIGHDGKQMLN----LDILIERDIAHLEMTLRRF--IADSNIRVEMVSDTVVLHGMVR 152
           V+    +G   L+        + ++ A ++  +     +  ++I   +    VV      
Sbjct: 154 VVAWWQNGTLFLSNRDRFAFTVPQNQAVIDSVMTDLKTLGATDITQSLRGGQVVFS---A 210

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL-LNIAGEDQVTLKVTIAEVRRDILK 211
           +    +  ++    ++ +  RN         V++L L               +  R    
Sbjct: 211 SPTVYREVIQ---PYIDRLHRNMAMVRIQLAVVSLGLTDQSASGFDWNALALQFNRLQSG 267

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                   T  +     + +A      V+     ++ GV   F+    +  L +     T
Sbjct: 268 TTTTTTGTTTVNGTVGGTLSAAQPPLSVNISNPGTLLGVSGVFNVAGAISFLSKFGNTDT 327

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSST-----------------------GATSVT 308
                +  +SG   +  SG    Y T    T                       G+    
Sbjct: 328 RQNVEVHTLSGAEVTLRSGQTIPYVTGVGVTAVGGLGTTTAATGNAALNSPGVVGSAQTG 387

Query: 309 THDYGVVLHFTPTVLSPGRI---------GLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           T   G+ +  TP   +  +I            I+         V     P  + +  +  
Sbjct: 388 TVQTGLTIKLTPHFDADNQIVTIDLNLLLNNLIEFRDLNAGNQVGILTQPVTQEQALNDI 447

Query: 360 VELPSGGTIVLAGLLKDD 377
           V + +G T+VL GL  D 
Sbjct: 448 VRVVAGNTVVLGGLQTDS 465


>gi|121582815|ref|YP_973257.1| lipoprotein [Polaromonas naphthalenivorans CJ2]
 gi|120596077|gb|ABM39515.1| lipoprotein [Polaromonas naphthalenivorans CJ2]
          Length = 540

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 71/238 (29%), Gaps = 37/238 (15%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V     ++     ++   +   S +  A       + G   +V           ++ AL 
Sbjct: 306 VSDKDNREFSLDWNLVYGALNVSSASRAPTTLAPDTAGAFGAVANTGRFAGSGLLVKALS 365

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATSVTT--------HDY 312
               +       L+  +G   S        Y +      ++ GA +  T           
Sbjct: 366 EQGLMVQQRSFPLSTQNGSPVSIGLPTIFDYVSEVTLTQTNAGAVNSQTAPSVKQKEEKI 425

Query: 313 GVVLHFTPTVLSPGRIGLRIQ----TEVSEPVIGVNAGDMPSYRVRKAD-------TTVE 361
           G  L  TP     G++ +       T V  P      G+  + + R  D       T V 
Sbjct: 426 GTYLTITPEAQDDGQVIISANFQDRTGVLTPYTVQAGGNSSTIQQRNIDEVSNIVRTVVR 485

Query: 362 LPSGGTIVLAGLLK----DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +  G   V+ GL +       ++L +G P+L        L  +    +    + +  T
Sbjct: 486 V--GVPTVIGGLSETVDNSKDRRLVDGAPIL--------LGGSDSLKKNRRSMILVVT 533


>gi|281356847|ref|ZP_06243337.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316405|gb|EFB00429.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 478

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 88/269 (32%), Gaps = 45/269 (16%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------PSKSFAADFGGKFVSEGGD 244
               Q+T   T+ EVR   L+ IG ++    +  G         +F    GG    +   
Sbjct: 188 RPAPQITFNFTLYEVRESTLRDIGIEYLAWKNGPGLNIFSVGWDAFGLTSGGTAAMQAMS 247

Query: 245 FSVKGVLDRFSFET-VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SST 302
             + G L    F+   +  L+++         ++T  +  + S        ++ ++ S  
Sbjct: 248 GPLGGFLFAPQFDASFIRLLQQSGKAEIKNSASITVSNSDTQSSELYFNPQFENITKSDN 307

Query: 303 GATSVTTHDYGVV-------LHF-TPTVLS----------------------------PG 326
             TSV     G+        L    P V                              PG
Sbjct: 308 DKTSVGVGTLGLTPGLNQLYLKIIQPIVNLHYGLPQDGYPAAEEFSMNVYKPGAYAKYPG 367

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            +      + +  V   N G       +    T+   +  TI LA   +D   +   G+P
Sbjct: 368 TVFFGYDVQAANVVERNNVGAELVETSQIVGNTLIQLNHETI-LAEWNRDQEVEQTIGVP 426

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAAT 415
            L  IPIL  LF  +  + E+T  +++ T
Sbjct: 427 FLMDIPILKYLFSTTTTSTEKTRFYLSVT 455


>gi|167042441|gb|ABZ07167.1| putative bacterial type II/III secretion system short domain
           protein [uncultured marine microorganism
           HF4000_ANIW133B20]
          Length = 285

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 277 LTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           LT + G+ A    G    +       T   +    ++  HD        P  +       
Sbjct: 160 LTVMDGERAFIQVGQSVPFTQQWVLLTSQYANIQQTIEFHDVTTGFAVRPRYIGD----- 214

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +++ E++  +  +NA     +   +  TTV  P G  + + G++++  +  +
Sbjct: 215 QVEVEITPRISRINARGFIDFE--QLSTTVRAPRGEWLDIGGIMQNHDEVSR 264


>gi|91775192|ref|YP_544948.1| NolW-like protein [Methylobacillus flagellatus KT]
 gi|91775336|ref|YP_545092.1| NolW-like protein [Methylobacillus flagellatus KT]
 gi|91709179|gb|ABE49107.1| NolW-like protein [Methylobacillus flagellatus KT]
 gi|91709323|gb|ABE49251.1| NolW-like protein [Methylobacillus flagellatus KT]
          Length = 264

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 277 LTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           LT + G+ A    G    +       T   +    ++  HD        P  +       
Sbjct: 139 LTVMDGERAFIQVGQSVPFTQQWVLLTSQYANIQQTIEFHDVTTGFAVRPRYIGD----- 193

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +++ E++  +  +NA     +   +  TTV  P G  + + G++++  +  +
Sbjct: 194 QVEVEITPRISRINARGFIDFE--QLSTTVRAPRGEWLDIGGIMQNHDEVSR 243


>gi|294778205|ref|ZP_06743632.1| TonB-dependent receptor plug domain protein [Bacteroides vulgatus
           PC510]
 gi|294447942|gb|EFG16515.1| TonB-dependent receptor plug domain protein [Bacteroides vulgatus
           PC510]
          Length = 1056

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 107/314 (34%), Gaps = 43/314 (13%)

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
            V++P  ADV +          +  G    ++    G+ ++   ++++         L  
Sbjct: 5   AVANPGVADVKIT---------QQSGTCTGVVKDATGETVIGASVVVKGTTNGTITGLDG 55

Query: 130 FIADSNIR---------VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             + SN++         V  ++  V+ +G    +        L E  +   G  +  N  
Sbjct: 56  DFSLSNVKKGDIIQISFVGYITQEVLWNGTPLNVILKDDTQTLDEVVVVAFGTQKKVN-- 113

Query: 181 SKKVMNLLNIAGEDQVTLK--VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              V   ++  G  ++  +   +  E  + ++  +    S  G S   +K F     G  
Sbjct: 114 ---VTGAVSTVGAKEIAARPVSSTVEALQGVVPGMNISTSSDGGSLKGNKEFNIRGTGTI 170

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERAT--AIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              G   SV  ++     E  ++A+       I  L +   ++I G  A    GG  L  
Sbjct: 171 ---GKGSSVSPLVLIDGMEGDINAINPQDIENISVLKDAAASSIYGSRAP---GGVILIT 224

Query: 297 TVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
           T    +G  S+  ++   +   L+  P +       L I  ++       N G  P Y  
Sbjct: 225 TKKGKSGKPSINYNNNFRFNSPLNM-PHMADSYSFALAINDQL------TNGGQSPMYSE 277

Query: 354 RKADTTVELPSGGT 367
           +K    ++   G +
Sbjct: 278 KKLQQILDYQHGKS 291


>gi|121726048|ref|ZP_01679347.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae V52]
 gi|121631530|gb|EAX63900.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae V52]
          Length = 250

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 17/218 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
              + L    + Q+ +   +  +  + L Q+  +  I  +      S   D        G
Sbjct: 4   TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVD-AISLSQVG 62

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASFTSGGQHLYKTVSS 300
           G             + V++ L +      + E     I       + T+  +++    ++
Sbjct: 63  GGLGASYRSASARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETT 118

Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351
               T   T          G  +   P +L  GRI +      +    +       +P+ 
Sbjct: 119 KDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTV 178

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
              ++  TV +  G  + LA L KD+  Q   G+ LL 
Sbjct: 179 DENESMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 215


>gi|171913479|ref|ZP_02928949.1| probable penicillin resistance regulatory protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 768

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 70/230 (30%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV ++  I EV     +Q     S              D+G +  S+ G   V+G+L +
Sbjct: 510 QQVLIRSFILEV-----EQGWLPWS--------------DYGLQEPSKDG-LQVQGILSK 549

Query: 254 FSFETVLHALERATAIRTL-AEPTLTAISGQSASFTSGGQHLYKT----------VSSST 302
              + +L  ++   ++++L A P++   SGQ        + +Y T           ++  
Sbjct: 550 EQGQKLLTHVQSDKSVQSLTAAPSVATRSGQRTHVDMVREFIYPTEFDPPQLAQPPTTKD 609

Query: 303 GA---------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--------- 338
           G                T+      G+ + F P V       + +  E+++         
Sbjct: 610 GKPIPGLGNLPIFPTTPTAFEMRPVGLRMEFDPVVQPGNVHRIELYWEITDFLGFMNYGN 669

Query: 339 ---------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
                           +I  N    P +   K  T+     G  +V+ G+
Sbjct: 670 PIKAQVKDQNGKEKELLISENKIQQPIFETLKLTTSFSARDGEYVVIGGI 719


>gi|196231382|ref|ZP_03130241.1| hypothetical protein CfE428DRAFT_3406 [Chthoniobacter flavus
           Ellin428]
 gi|196224718|gb|EDY19229.1| hypothetical protein CfE428DRAFT_3406 [Chthoniobacter flavus
           Ellin428]
          Length = 267

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 39/154 (25%)

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH-------------------LYKT 297
            T +  +      + +  P +T  +GQ A   +  +                        
Sbjct: 90  NTRIQQMLAKGTAKLIGWPIMTTHTGQRAVIEAIKEIRWATEYHPPTLNVSEVPADPPAK 149

Query: 298 VSSSTGATS-------VTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPV--------- 340
           V+ S   ++         T + GV L   P +   G+ I L I  +              
Sbjct: 150 VTPSVDVSTLEAFPTAFETRNAGVTLEVEPVIAPDGKTIDLNIVPQHVRLTGFKKVTIEG 209

Query: 341 ---IGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
               G    + P +   K  T+  L +G  +++ 
Sbjct: 210 AAHKGKTIVEQPEFNTNKVTTSRRLKNGERVLMG 243


>gi|318606999|emb|CBY28497.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 93

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
             IP +G LFR S+   E++ + +   P +++  +
Sbjct: 2   GDIPFIGGLFRQSKEKIEKSNLILFIRPTILRETS 36


>gi|228471921|ref|ZP_04056691.1| hypothetical protein CAPGI0001_0005 [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276773|gb|EEK15479.1| hypothetical protein CAPGI0001_0005 [Capnocytophaga gingivalis ATCC
           33624]
          Length = 386

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 68/214 (31%), Gaps = 31/214 (14%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPS------VAKLPPIKEANAAVINISDVEIGKGKKISIGL 54
           M+Y  +  F  ++I L +   S      V   P          N S+  +    K +   
Sbjct: 1   MKYFFKISFMALAIGLLTIGCSKKGDDEVTPNPKNPSNPTNPSNPSNPPVASSLKFT-PE 59

Query: 55  NKVIILQVPVDV---------QDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGH 104
           N  + ++    V           V + +   A +        + + GK  G   V ++  
Sbjct: 60  NPSVEVEKTTTVGIVGTWNTTDKVKIDNEEVATLQGAVQDNKLTVLGKKAGTTKVHILSA 119

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           D K+  + ++ +          L  F  +  +  E  + T+   G V    D  + V   
Sbjct: 120 DNKERGSFELTVSP------KLLLSFTPEKAVVKEGETTTITFSG-VWNATDRVQIV--- 169

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
               +        N +  K+  L   AG  +V +
Sbjct: 170 ----NGEIAQLQGNVTDNKITLLAKKAGTTKVEI 199



 Score = 44.6 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 67  QDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
             V + +   A +    +   + L  K  G   V +   D +   + ++ +    + L++
Sbjct: 164 DRVQIVNGEIAQLQGNVTDNKITLLAKKAGTTKVEIFTQDNRSRGSFEVSVYTTASTLKL 223

Query: 126 TLRRFIADSNIRVEM 140
             +  +      +  
Sbjct: 224 PHKNPLPHYRTDITN 238


>gi|77165572|ref|YP_344097.1| NolW-like [Nitrosococcus oceani ATCC 19707]
 gi|254434892|ref|ZP_05048400.1| Bacterial type II/III secretion system short domain protein
           [Nitrosococcus oceani AFC27]
 gi|76883886|gb|ABA58567.1| NolW-like protein [Nitrosococcus oceani ATCC 19707]
 gi|207091225|gb|EDZ68496.1| Bacterial type II/III secretion system short domain protein
           [Nitrosococcus oceani AFC27]
          Length = 287

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 42/145 (28%), Gaps = 23/145 (15%)

Query: 274 EPTLTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
              +  + GQ+AS  +G                     SV   D        P +     
Sbjct: 154 TQQVRVMEGQAASIRTGHSIPLANRAWLLPGGRLLTQNSVYYRDVVSGFEVLPHIH-GDE 212

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L I+   + P             ++K  T V +P G  + L G   +  QQ       
Sbjct: 213 VTLDIRPYQANPSRQGGGR----IAIQKLATQVSVPLGRWLELGGADGNRQQQ------- 261

Query: 388 LSKIPILGALFRNSRFNREETEIFI 412
                 LG  +     N E   IFI
Sbjct: 262 -----GLGTFYGTHSRNEELRHIFI 281


>gi|221215376|ref|ZP_03588341.1| putative component of type II secretion apparatus [Burkholderia
           multivorans CGD1]
 gi|221164808|gb|EED97289.1| putative component of type II secretion apparatus [Burkholderia
           multivorans CGD1]
          Length = 550

 Score = 50.0 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 85/257 (33%), Gaps = 26/257 (10%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEG 242
           +  LN +    + + V++ EV     +  G   S+    SS     SF+     K     
Sbjct: 298 IKELNASFSKSIAIDVSVYEVHLSNNENYGANLSLAYKSSSGHTGVSFSGASVPKVSGAA 357

Query: 243 GDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
              S+   +           + AL     +  + + +    +G++ +  +     Y   +
Sbjct: 358 SAMSLGATILSGPMAGSTAAVQALSALGNVSQVVQRSGMTQNGKALNLQAATDQDYVNQT 417

Query: 300 SSTGATSVTTHDYGVVLHFTPTVL-------SPGRIGLRIQTEVSE----------PVIG 342
            ST A +V           TP            GRI +     +S           P   
Sbjct: 418 QSTLAANVGATSGIQTATVTPGFTGSFLPRYRDGRIFVVFDMTLSNLTALEPYPPNPKTD 477

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             +  + + +  +   +V L  G ++V+ G+ +      K G+      P+LG       
Sbjct: 478 QASVQLRTLQKSRFQQSVSLKPGDSLVITGMYQQTASVNKNGV-GSPSFPLLG---GGID 533

Query: 403 FNREETEIFIAATPFLV 419
             +++T + I  +  ++
Sbjct: 534 AQKKDTILAIVISARVL 550


>gi|297539539|ref|YP_003675308.1| NolW domain-containing protein [Methylotenera sp. 301]
 gi|297258886|gb|ADI30731.1| NolW domain protein [Methylotenera sp. 301]
          Length = 284

 Score = 50.0 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 69/227 (30%), Gaps = 18/227 (7%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +E  L        ++ ++  + N L I    +  +++       D+ +Q      IT S 
Sbjct: 47  AEDILPIIQPLVGSDGTATGMQNHLIIRASPEKMIEIEQIISTLDVERQ---NLRITVSH 103

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT--LTAIS 281
               ++   +         G+ ++       +    +            +     +  + 
Sbjct: 104 QNNLQTNNDNVAVSGRKRIGNVTIGTNKYPRNAADGVQLDIENNQSSIRSNGNQFINVMD 163

Query: 282 GQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           G+ A    G    Y       T   ++   +    D        P       IG +++ E
Sbjct: 164 GERAFIRVGRSVPYTQEWVTLTQRYTSIQRTTEFADISTGFSVRPR-----SIGNQVELE 218

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           ++  +  +N      +   +  T V +  G  + L G ++   +  +
Sbjct: 219 ITPRIAQLNQNKYIDFE--ELSTIVRVNRGEWLDLGGTMQQKDEVSR 263


>gi|120611389|ref|YP_971067.1| Type II secretory pathway component PulD-like protein [Acidovorax
           citrulli AAC00-1]
 gi|120589853|gb|ABM33293.1| Type II secretory pathway component PulD-like protein [Acidovorax
           citrulli AAC00-1]
          Length = 566

 Score = 50.0 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 65/208 (31%), Gaps = 19/208 (9%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           +++ +N      + + VTI  V     +  G    +       +    A       + G 
Sbjct: 318 LLHSINQRFARNLLIDVTIYNVSMTKEETAGVSMDLVYRRLNGNGVGVAGAAPLQPANGQ 377

Query: 244 DFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              +       +        V  AL+    +    +    AI+GQ + F       Y T 
Sbjct: 378 PGRITLSFSDPASRLAGSRMVAEALQSVGNVALYKKGQFMAINGQPSPFQVVDDEEYNTS 437

Query: 299 SSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVN 344
            S+T   +V T           G+  +  P +L   RI L+ Q E+S        V+   
Sbjct: 438 VSATQTANVGTQLATQKAVLTTGLTGNVLPLILGDNRILLQYQMEISAVSNMNPAVVNGI 497

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAG 372
               P    +       L  G  IVL G
Sbjct: 498 LTYSPKRSRQSFQQQAFLKDGDAIVLFG 525


>gi|317133812|ref|YP_004089723.1| Ig domain protein group 2 domain protein [Ruminococcus albus 7]
 gi|315450274|gb|ADU23837.1| Ig domain protein group 2 domain protein [Ruminococcus albus 7]
          Length = 467

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 23/180 (12%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQD--VLVSDPTKADVV--VHSPRTMYLFGKNVGQ 96
           ++  G+   +S+ L     L    + +   VLV D   AD      +P  + + GK  G 
Sbjct: 208 ELTYGESDTVSVTL-----LPFDAENKRLTVLVGDTDIADYEFDQTNPNGIIVTGKKAGT 262

Query: 97  ANVILIGH------DGKQMLNLDILIERDIAHLE------MTLRRFIADSNIRVEMVSDT 144
             +   G       D      L + + +  + +                  +      D 
Sbjct: 263 TTITFTGDSWTDTIDDDISAVLTVTVNKADSTVTVAPTANELTYTGSGQDLVAKGETEDG 322

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
            +++ +  +   +  A   SE     +    Y      KV+   N    + V++KVTIAE
Sbjct: 323 TIVYAIGESADTAPNADAFSENIPGGTEAGDY--YVWYKVIGDENHNDSEPVSVKVTIAE 380


>gi|253997315|ref|YP_003049379.1| NolW domain-containing protein [Methylotenera mobilis JLW8]
 gi|253983994|gb|ACT48852.1| NolW domain protein [Methylotenera mobilis JLW8]
          Length = 282

 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 66/229 (28%), Gaps = 18/229 (7%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
             +E  L         + ++  + N L +  + +   +V   E     L       +I+ 
Sbjct: 43  RFAEEVLPTIQAVIGDHGTASAIQNQLIVRTDSRTMAEV---EQTISTLDTARENFTISV 99

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--ETVLHALERATAIRTLAEPTLTA 279
                S     +   +  +  G+ +++   D         +   +  T  +  ++  +  
Sbjct: 100 KRQNISSGSNRNSTIRGRTRIGNATIQTGNDARGGRDGIQIGIEDNQTNAQQSSQQFIRV 159

Query: 280 ISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
             G  A  + G    Y       T   +    S    D G             +I L I 
Sbjct: 160 TDGAPAYISVGESIPYTNEWVVLTRRYAVRQVSTQFVDIGTGFTVRAR-SIGSQIELEIT 218

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
              S                 +  +TV +  G  + + G+++D  +  +
Sbjct: 219 PTFSRLQQDG------RIEFEQLSSTVRVQRGEWVNIGGIMQDKDEVSR 261


>gi|8896027|gb|AAF81210.1|AF247502_5 PilNb [Salmonella enterica subsp. enterica serovar Dublin]
 gi|7274591|gb|AAF44784.1| PilNb [Salmonella enterica subsp. enterica serovar Typhi str. Ty2]
 gi|32454459|gb|AAP83031.1| PilNb [Salmonella enterica subsp. enterica serovar Paratyphi C]
          Length = 129

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 12/115 (10%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPS 364
           G  +   P +   G + L++   +S+P          G +  +MP  ++R       L +
Sbjct: 15  GFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKDGNSYIEMPYTKLRSLSQKTNLRA 74

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G  +VL G  + + +  K G        +LG        +   + + I  TP L+
Sbjct: 75  GQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGRDGDDSRSTLVIIITPELM 125


>gi|197336519|ref|YP_002157477.1| lipoprotein, putative [Vibrio fischeri MJ11]
 gi|197315222|gb|ACH64670.1| lipoprotein, putative [Vibrio fischeri MJ11]
          Length = 540

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 103/284 (36%), Gaps = 31/284 (10%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT---LKVTIAEVRRDILKQIGF 215
           R+  L+     ++   +   ++ K+V N ++      +T   ++  + E+  ++  +   
Sbjct: 265 RSGSLALNKFDRTVTVKDTPNNVKRVGNFIDELNYTALTPYSIQADVYEIIWEVNDEKQV 324

Query: 216 QH-----SITGSSSGPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERAT 267
                  S + + +  S +  +D G   ++    GGDF    ++ +F  E          
Sbjct: 325 SWTAAFESASFALNAMSPTVVSDSGLGSITATKIGGDFDGSNIIGKFLNENASVYSRITN 384

Query: 268 AIRTLAE-PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
           +I+T    PT    S   A   SG +    +   +  +T+    + G  +   P + S G
Sbjct: 385 SIKTKNNIPTQLISSQDRA-IVSGREVTIDSNGFAQQSTNTKLINEGFNITTRPRLTSDG 443

Query: 327 RIGLRIQTEV----SEPVIGVNAGDMPSYRVRKADTT--VELPSGGTIVLA----GLLKD 376
           +I + +             G     +     ++  T   + + SG ++VL      L + 
Sbjct: 444 KIDMEVIVNTKSIGDIKTFGSEEDMVQLEETKQHGTISGIPIRSGESVVLNAYERDLTRA 503

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           D+  L++ +P                  R ++ + +   P +++
Sbjct: 504 DLASLEKNLPW--------WTGGGKSNKRYKSSLIVMVKPVIME 539


>gi|8896026|gb|AAF81209.1|AF247502_4 PilNa [Salmonella enterica subsp. enterica serovar Dublin]
 gi|7274588|gb|AAF14814.2| PilNa [Salmonella enterica subsp. enterica serovar Typhi str. Ty2]
 gi|32454458|gb|AAP83030.1| PilNa [Salmonella enterica subsp. enterica serovar Paratyphi C]
          Length = 277

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 6/130 (4%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            +   N     QV L V +  V     +Q+G   +I   S   + +   +  G   +   
Sbjct: 122 YVEQQNRQMNRQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNATS 181

Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                 D +            ++ AL     +  +        +          Q +Y  
Sbjct: 182 ASVSILDSATGSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVA 241

Query: 298 VSSSTGATSV 307
            SS+T  T V
Sbjct: 242 QSSTTTTTDV 251


>gi|300113671|ref|YP_003760246.1| NolW domain-containing protein [Nitrosococcus watsonii C-113]
 gi|299539608|gb|ADJ27925.1| NolW domain protein [Nitrosococcus watsonii C-113]
          Length = 287

 Score = 47.3 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 41/145 (28%), Gaps = 23/145 (15%)

Query: 274 EPTLTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
              +  + GQ+A   +G                     SV  HD        P +     
Sbjct: 154 TQQVRVMEGQTARVQAGHSIPMTNRAWLLPGGGLLTQNSVYYHDVVSGFEVLPRIHGD-E 212

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L I+   + P             ++K  T V +P G  + L G   +  QQ       
Sbjct: 213 VTLDIRPYQANPSRQGGGR----IAIQKLATQVSVPLGRWLELGGADGNRQQQ------- 261

Query: 388 LSKIPILGALFRNSRFNREETEIFI 412
                 LG  +     + E    FI
Sbjct: 262 -----GLGTFYGTHSRSEELRHFFI 281


>gi|168698533|ref|ZP_02730810.1| hypothetical protein GobsU_03369 [Gemmata obscuriglobus UQM 2246]
          Length = 635

 Score = 47.0 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 19/150 (12%)

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G     G    V    +       L A +       L+ P +     Q+     G  +  
Sbjct: 447 GLTTERGTSGCVLTPREAERLNDFLRAAKEKGECEVLSRPLVQVADNQTGYVQIGQNYPV 506

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIG------VNAGDM 348
                      V +   G  L  TP + S G+ + L  + +  + + G      V     
Sbjct: 507 ALAGGK-----VESKFAGTALRVTPCLASDGQTVKLTTEVQNGKVIPGTVMTAFVPGTTF 561

Query: 349 PSYR-------VRKADTTVELPSGGTIVLA 371
           P          V++    V +P+G T V+A
Sbjct: 562 PVTTLMPATVCVQEVRANVAVPAGHTAVVA 591


>gi|254513511|ref|ZP_05125576.1| hypothetical protein RKLH11_4189 [Rhodobacteraceae bacterium KLH11]
 gi|221532515|gb|EEE35511.1| hypothetical protein RKLH11_4189 [Rhodobacteraceae bacterium KLH11]
          Length = 496

 Score = 47.0 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 92/261 (35%), Gaps = 33/261 (12%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDI 209
           R IQ+     +L       +     A  +  K M  +++ G   V  +    I + +   
Sbjct: 208 RDIQEHDAWADLERQL--DAVTPPPAQVTYAKSMGRVSVFGPPSVQARAAQVITDFQEVY 265

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFV-----------SEGGDFSVKGVLDRFSFET 258
             +IG + ++    +  S +FA    G              +  G  ++       +F++
Sbjct: 266 STRIGIEIAVYFIDTSKSDTFAVGLEGSGTHGAIAGAIGAITGNGIATIANDFGSINFQS 325

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTT--H 310
               L   +++      +  A SG  A  +      Y + +++T       +TSV T   
Sbjct: 326 ----LAENSSVVDYRLTSTIAQSGTIAPISLPRSQNYVSKTTTTPDSNGNVSTSVETATI 381

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPS 364
           D G+ +H  P ++   RI L +    ++         G +   +P    R       L  
Sbjct: 382 DTGISIHALPRLVQNNRIHLSLTLIQNDLTELESFESGGSTVQLPKVDQRMILNDNILAP 441

Query: 365 GGTIVLAGLLKDDIQQLKEGI 385
           G T+V +G  +D   +   G+
Sbjct: 442 GETLVFSGYEQDKATRSNTGV 462


>gi|322834629|ref|YP_004214656.1| type II and III secretion system protein [Rahnella sp. Y9602]
 gi|321169830|gb|ADW75529.1| type II and III secretion system protein [Rahnella sp. Y9602]
          Length = 482

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 11/165 (6%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
            +  S      S   D     +  GG     G     S +  L+AL   T  + L   + 
Sbjct: 274 GLNMSYIDGGSSVVIDTSMMDMLGGGMTVAGGADRALSIDAKLNALYSLTGSKVLQSGSF 333

Query: 278 TAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDY----GVVLHFTPTVLSPGRI 328
              +             Y      TV+  +G   V         G     TP V++ GR+
Sbjct: 334 VTRNNTPIPLNMTNSQHYVSGRTRTVNKDSGDEDVEIETAEIITGTSFIITPRVMTDGRV 393

Query: 329 GLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            +           +   +   +P+    +   +  +  G  +++A
Sbjct: 394 EVTSGFTKSQLNSIDVFDTVQLPNVTTTEMFNSTAVNPGSLLMVA 438


>gi|167620934|ref|ZP_02389565.1| Type II secretory pathway, component PulD [Burkholderia
           thailandensis Bt4]
          Length = 63

 Score = 46.6 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+  T   L  G  +VL GL++D     + G   L       +       +++ TE+ 
Sbjct: 2   NTRQLQTVTRLKDGEVVVLGGLIQDRNTSARSGYAWLP------SFLDGRSSSKQRTEVL 55

Query: 412 IAA 414
           +  
Sbjct: 56  LVL 58


>gi|325274962|ref|ZP_08140964.1| PilN family type IV pilus biogenesis protein [Pseudomonas sp.
           TJI-51]
 gi|324099903|gb|EGB97747.1| PilN family type IV pilus biogenesis protein [Pseudomonas sp.
           TJI-51]
          Length = 120

 Score = 46.6 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 12/117 (10%)

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVEL 362
           T   G  ++  P V+    + LR    +S      +   G N  ++P    R     V+L
Sbjct: 7   TVTSGFNMNLLPYVMPGKELLLRYSINLSALKQIRQVSSGDNTIEIPEVDNRIFSQMVKL 66

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS-RFNREETEIFIAATPFL 418
            SG T+VL+G  +      K G+   S       L   S + +  +  I +  TP +
Sbjct: 67  RSGETLVLSGFEQSVDNGSKAGVGSASN-----WLMGGSLKRDNSKDVIVVLITPIV 118


>gi|229084241|ref|ZP_04216524.1| hypothetical protein bcere0022_8840 [Bacillus cereus Rock3-44]
 gi|228699041|gb|EEL51743.1| hypothetical protein bcere0022_8840 [Bacillus cereus Rock3-44]
          Length = 852

 Score = 46.6 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           S+   ADV       + + GK +G+  +  I  DGK++ N +I +   +      L
Sbjct: 303 SNKDIADVETI-DGKVKVIGKGIGKTTIQAISEDGKKVTNAEITVTNSLDVTRDGL 357


>gi|87308242|ref|ZP_01090383.1| hypothetical protein DSM3645_11766 [Blastopirellula marina DSM
           3645]
 gi|87288799|gb|EAQ80692.1| hypothetical protein DSM3645_11766 [Blastopirellula marina DSM
           3645]
          Length = 553

 Score = 46.6 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 20/137 (14%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------STGATS 306
            S + +L  LE       +    LT ++G       G +    T S           AT+
Sbjct: 379 MSADEMLEMLEDKKQYELIDSFDLTTVTGHETKVQQGRRQPVVTGSQMIPQRGPDGRATA 438

Query: 307 VTT-----HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------GVNAGDMPSYRVR 354
           +        + G +L  +P +L   R  L++  E S+                 PS    
Sbjct: 439 MQRNQYNLQNVGTMLTVSPEML-GNRASLKLAFERSDVADPKEDKAEDDANDSPPSITTL 497

Query: 355 KADTTVELPSGGTIVLA 371
             +T + L  G   +L+
Sbjct: 498 IINTQLLLEDGQATILS 514


>gi|213421917|ref|ZP_03354983.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 213

 Score = 46.2 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K++  L+   +  + + V I +V    + Q+G       S  G   +F        
Sbjct: 123 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 178

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
              G       + D  +F   L+ALE+++    L++
Sbjct: 179 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQ 213


>gi|220934554|ref|YP_002513453.1| hypothetical protein Tgr7_1381 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995864|gb|ACL72466.1| hypothetical protein Tgr7_1381 [Thioalkalivibrio sp. HL-EbGR7]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 8/103 (7%)

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           E  +    GQ A    G      +++      T    V           TP ++  GR+ 
Sbjct: 161 EQWVRVQEGQQAHIREGEVIPMASIAYLRRDGTLVGGVDYQGLDRGFVVTPHLMPDGRVR 220

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L I                     R  +T V + +G  + L G
Sbjct: 221 LHIVQIAERESPAGGGR----IETRGLETVVTIETGEWVDLGG 259


>gi|187921869|ref|YP_001893458.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
 gi|187720307|gb|ACD21529.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
          Length = 598

 Score = 46.2 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 87/274 (31%), Gaps = 32/274 (11%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKS 229
              + A   ++ ++N         V+  + + ++ R    Q+G      +T + +     
Sbjct: 317 TDTKDAVDRAEGIINFHRALLNKLVSYHIRVVQITRSNAGQLGVDWQALLTKALNNVPGF 376

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSAS 286
             +      ++     S+   +    F     V++A+ +     +  +  +   +  S  
Sbjct: 377 IISSTSPLTLTTAAAGSLTTKITSGQFSGTQAVVNAIAQLGYTVSTDDIPMQVQNRHSGY 436

Query: 287 FTSGGQHLYKTVSSSTGATSVTTH----------DYGVVLHFTPTVLSPGRIGLRIQTEV 336
           + +  Q  Y + ++   +T   T             G+      TV     I + +  + 
Sbjct: 437 YDNVNQFSYVSQTTPAASTVGGTGGTPGITTSMDSVGLKFLIYGTVTDDNNISISVSMDN 496

Query: 337 S---------EPVIGVNAGDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           S             G N   +      K  A T   + +GG IVLA   +  +Q  +   
Sbjct: 497 SALNGPIQTFTSGQGANQQSVQEVDKNKYGASTDGIVRNGGIIVLAAHDRTQLQSQRSA- 555

Query: 386 PLLS-KIPILGALFRNSRFNREETEIFIAATPFL 418
             L  KIP+L     +   +   T      +  +
Sbjct: 556 --LGYKIPMLAG--GSVNDSDSRTTTLFVISASI 585


>gi|330862440|emb|CBX72598.1| hypothetical protein YEW_HP33930 [Yersinia enterocolitica W22703]
          Length = 347

 Score = 45.8 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVT 197
              + + L G   +      A   S      +   +   ++     +L+    +   Q+ 
Sbjct: 210 SAGNHLPLAGEKESEDAPVSAPLFSADPRQNAVIIRDRQANMPLYSSLITQLDQRPVQIE 269

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           + VTI +V    + Q+G   S + S  G   SF +           D     + +  +F 
Sbjct: 270 ISVTIIDVDAGDISQLGIDWSASTSIGGAGVSFNSGEAAPH----SDGFSTVIGNTGNFM 325

Query: 258 TVLHALER 265
             L+AL+R
Sbjct: 326 VRLNALQR 333


>gi|257486850|ref|ZP_05640891.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 102

 Score = 45.8 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 321 TVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            ++    + L +   +S            ++  +P+Y  +     V+L SG T++L+G  
Sbjct: 1   RLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF- 59

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            +++    + I      P    L    +    ++ + +  TP +
Sbjct: 60  -EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPIV 100


>gi|326336569|ref|ZP_08202738.1| hypothetical protein HMPREF9071_2204 [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691234|gb|EGD33204.1| hypothetical protein HMPREF9071_2204 [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 607

 Score = 45.8 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 72/202 (35%), Gaps = 17/202 (8%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               MS+ + S   S  ++             ++VE+GK   ++I       +       
Sbjct: 1   MALAMSLLIISCKKSEKEVEAPPTQLKFTPERTEVEVGKTATVTI-------VGTWNKTD 53

Query: 68  DVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            V +++          +   + L  K VG   V ++  DG+   N ++ +          
Sbjct: 54  KVQIANKEIITQQGEVTDNKINLLAKKVGTTKVNVLTADGRNRGNFEVTVTP-----TSE 108

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRT---IQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           L        + +   + TV + G   T   +Q + + +   +  ++ +  N  A      
Sbjct: 109 LHFTPKKPEVEIGKAT-TVTIVGTWNTTDKVQIADKEIVTQQGEVTDNKINLLAKKVGTT 167

Query: 184 VMNLLNIAGEDQVTLKVTIAEV 205
            +++L   G ++ + ++T+  +
Sbjct: 168 KVSVLTADGRNRGSFEITVTPI 189



 Score = 43.5 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 46  KGKKISIGLNKVIILQVPV---DVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVIL 101
             + +SI   K  I+ +         V ++D   A +    +   + L  K VG   V +
Sbjct: 278 SPESVSIEEGKTTIVTITGVWNTTDRVQITDGEVAALQGEVTDNKITLLAKKVGATKVEV 337

Query: 102 IGHDGKQMLNLDILIER 118
              +G+   + ++ +  
Sbjct: 338 FTKEGQSRGSFEVTVTP 354



 Score = 41.6 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 57  VIILQVPVDVQDVLVSDPTKADVVV-HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           V I+ V      + +++    ++    +   + L  K VG   V +   D +   + ++ 
Sbjct: 375 VTIIGVWNTTDRIQIANNEIVELKGGVTNNKITLLAKKVGNTKVEIFTADNRSRGSFEVS 434

Query: 116 IERDIAHLEMTLRRFIADSNIRVE 139
           +      L++  +  I      + 
Sbjct: 435 VYTLANTLKLAYKADIPHYKTGIT 458



 Score = 37.3 bits (85), Expect = 5.5,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 10/120 (8%)

Query: 67  QDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
             V V +    +     +   + L  K VG   V +   +G +  +  +++         
Sbjct: 219 DKVKVENTEIVEQQGEVTNNKITLLAKKVGDTKVEIFTANGHKRGSFQVIVTP------- 271

Query: 126 TLRRFIADSNIRVEMVSDTVV-LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
            L    +  ++ +E    T+V + G V    D  +  +     L     +      +KKV
Sbjct: 272 KLLLSFSPESVSIEEGKTTIVTITG-VWNTTDRVQITDGEVAALQGEVTDNKITLLAKKV 330


>gi|325274960|ref|ZP_08140963.1| type IVB pilus formation outer membrane protein [Pseudomonas sp.
           TJI-51]
 gi|324099907|gb|EGB97750.1| type IVB pilus formation outer membrane protein [Pseudomonas sp.
           TJI-51]
          Length = 427

 Score = 45.4 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 3/108 (2%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +N  N     QV L V +  V       +G   ++  ++             +  +    
Sbjct: 315 LNGENSNITKQVLLNVKVLSVTLTDKDDLGIDWNLVYTAVNGKWGIGWKNVTQADAAAVQ 374

Query: 245 FSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            SV  +     +     ++ AL +   + T+  P++T ++ Q      
Sbjct: 375 GSVSILDTSSQWAGSNLLVKALAQQGRVSTITSPSVTTLNLQPVPVQV 422


>gi|327540297|gb|EGF26883.1| hypothetical protein RBWH47_03922 [Rhodopirellula baltica WH47]
          Length = 593

 Score = 45.4 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 14/159 (8%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
           P+       +   +     ++  +     I    N V  L V   ++ V V D + A V+
Sbjct: 421 PAALASHRGEFHRSVPATEAERSLRIEDTIQCDANDVTSLTVDGVIEAVRVEDDSIARVI 480

Query: 81  VHSPRTMYLFGKNVGQANVILIG------HDGKQMLNLDILIERDIAH--------LEMT 126
             + R + L G   G+  V++           +++  L I    ++          L   
Sbjct: 481 GSTSRHLRLIGVRPGKTRVLVQQKLAGDAESIREIYELHITSPSNVRGGESQQEQSLMEL 540

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           + +    +++++    D +++ G     +D++  V L  
Sbjct: 541 IEQKYRTASVQISRQGDRIIVQGECDDSRDAKEIVRLIR 579


>gi|32475170|ref|NP_868164.1| hypothetical protein RB8056 [Rhodopirellula baltica SH 1]
 gi|32445711|emb|CAD78442.1| hypothetical protein RB8056 [Rhodopirellula baltica SH 1]
          Length = 593

 Score = 45.0 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 14/159 (8%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
           P+       +   +     ++  +     I    N V  L V   ++ V V D + A V+
Sbjct: 421 PAALASHRGEFHRSVPATEAERSLRIEDTIQCDANDVTSLTVDGVIEAVRVEDDSIARVI 480

Query: 81  VHSPRTMYLFGKNVGQANVILIG------HDGKQMLNLDILIERDIAH--------LEMT 126
             + R + L G   G+  V++           +++  L I    ++          L   
Sbjct: 481 GSTSRHLRLIGVRPGKTRVLVQQKLAGDAESIREIYELHITSPSNVRGGESQQEQSLMEL 540

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           + +    +++++    D +++ G     +D++  V L  
Sbjct: 541 IEQKYRTASVQISRQGDRIIVQGECDDSRDAKEIVRLIR 579


>gi|124262948|ref|YP_001023418.1| pilus (IV) biogenesis [Methylibium petroleiphilum PM1]
 gi|124262194|gb|ABM97183.1| Pilus (IV) biogenesis [Methylibium petroleiphilum PM1]
          Length = 460

 Score = 45.0 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 91/316 (28%), Gaps = 53/316 (16%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV------------- 196
            V  + D   A  L  +      R+ Y ++    +    + +    +             
Sbjct: 162 EVPNLMDQPAAANLLASLRRLGARDAYLDAIGNTITFEASRSSWQAIDGYLAHMRRSKPM 221

Query: 197 -TLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
              +V + +V        G    S+  + +G   +++   GG  +   G  S   V    
Sbjct: 222 LVYEVEVYQVELTDTTNNGIGFTSLAKNLAGDPNNWSVARGGTGI---GSASFAFVGKNV 278

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH---- 310
           +   V+  L+    + +L+ P +  +SG S+ F  G    Y    S     S +      
Sbjct: 279 TMAAVVDLLQTQGTVSSLSRPRVAMLSGSSSKFRVGQTTKYVAKISQQNTGSGSASTTTT 338

Query: 311 --------DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD--MPSYRVRKAD 357
                     G  L              + L I   +             +P    R+ +
Sbjct: 339 SSADTDELKTGFELQMKGGYQEGSVFTNLKLTISELIRFNDFEAFGTKLRLPDTTEREIE 398

Query: 358 TTVELPSGGTIVLAGLLKDDIQ----QLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           T V    G  I+L GL              G+              N       +EI +A
Sbjct: 399 TLVRARPGDLILLGGLGSTKQNAGHEAGITGV--------------NKSTTASRSEIVVA 444

Query: 414 ATPFLVKPVAMRDLSR 429
             P ++   A ++  +
Sbjct: 445 MRPRVISFTAAKEAQQ 460


>gi|87312053|ref|ZP_01094160.1| hypothetical protein DSM3645_15135 [Blastopirellula marina DSM 3645]
 gi|87285222|gb|EAQ77149.1| hypothetical protein DSM3645_15135 [Blastopirellula marina DSM 3645]
          Length = 1719

 Score = 45.0 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 76/251 (30%), Gaps = 43/251 (17%)

Query: 248  KGVLDRFSFETVLHAL---ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301
              + +  +F      +   +    ++ L  P+L     +      G        S S   
Sbjct: 1385 GALANDPTFLAAAQLMGGAQPNGVVQNLY-PSLPTNKDEE---RLGFSTPQPNQSGSALQ 1440

Query: 302  --TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------RIQTEVSEPVIGVNAGDMPS 350
                  S+   + G      P +   G   +          I+  V      +       
Sbjct: 1441 DLVPDPSIYKFETGTGFEIRPVIQPDGYSIIYDFNYMYTTNIREPVQADEKHLGRIKRHF 1500

Query: 351  YRVRKADTTVELPSGGTIVLAGLLKD-----DIQQLKEGIPLLSKIPILGALFR--NSRF 403
               +   ++ EL          L+          +  +G+PLL  IP++G  FR   S  
Sbjct: 1501 INTQVQTSSFELR---------LISRYQVALKAARTSQGVPLLQDIPVVGLAFRPLPSDE 1551

Query: 404  NREETEIFI---AATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
            +  +  + +      P L   + +R   S  D +++   DA+     R   +    +  E
Sbjct: 1552 SSIQQNVILGQTVVYPTLYDLMGLRWAPSVVDLNHTNARDAEHTVRGRYQSVKNSID--E 1609

Query: 460  VEGQNYKGAIG 470
            +  + +   IG
Sbjct: 1610 ISKKRFDDFIG 1620


>gi|254425195|ref|ZP_05038913.1| TonB-dependent siderophore receptor subfamily [Synechococcus sp.
           PCC 7335]
 gi|196192684|gb|EDX87648.1| TonB-dependent siderophore receptor subfamily [Synechococcus sp.
           PCC 7335]
          Length = 839

 Score = 45.0 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 6/196 (3%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH---GMVRTIQDSQRAVELSETFLSQSGR 173
            R    +++ +    A  +++V +V + +VL    GM  +                +   
Sbjct: 122 ARADNSIQIAITGTDAPPDVQVGVVGENLVLSVVPGMAPSANAEDAIQLTVIGDQDEGYS 181

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
              A+  ++    LL++    QV  +  IA+     L  +        ++S P   F +D
Sbjct: 182 PNSASVGTRTDTLLLDVPASIQVIPEAVIADQGALDLLDVLRNTPGINTNSSPRDIF-SD 240

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           F  +  + G  F   GV D     T L  L     +  L  P  + + GQ A   +    
Sbjct: 241 FTIRGFNTGNTFLRNGVADNDLGRTGLD-LSNVERVEVLRGP-ASVLYGQIAPGGAVNVV 298

Query: 294 LYKTVSSSTGATSVTT 309
             K +S       VT 
Sbjct: 299 TKKPLSVPFYDVEVTY 314


>gi|83643784|ref|YP_432219.1| hypothetical protein HCH_00903 [Hahella chejuensis KCTC 2396]
 gi|83631827|gb|ABC27794.1| conserved hypothetical protein [Hahella chejuensis KCTC 2396]
          Length = 262

 Score = 44.6 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 7/148 (4%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
            E   + V GV+        + A ++  + R   + TLT + G SA   +G +   +T  
Sbjct: 97  GENSGWGVSGVISNEGGSARVEAGKKVYSTRGGGQQTLTVVEGSSAFINTGQKQPVRTTQ 156

Query: 300 SSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
              G    SV   D    ++  P +    R+ L+++++ +E                  D
Sbjct: 157 RINGRVVDSVEYLDLSSGVYVEPRLTGQNRVELKVRSQSNERDDIQQQR----INTSSLD 212

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           T   +  G  + L G      +    GI
Sbjct: 213 TLRVVQLGEWVELGGATLTSNR-SDSGI 239


>gi|167034682|ref|YP_001669913.1| NolW domain-containing protein [Pseudomonas putida GB-1]
 gi|166861170|gb|ABY99577.1| NolW domain protein [Pseudomonas putida GB-1]
          Length = 256

 Score = 44.6 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 8/109 (7%)

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
             + A  GQ A    G      + S+       ++    +     + TP+ LS   + L+
Sbjct: 115 QQVQASEGQPALIQVGQSIPITSTSTDGYGRIQSNTEYRNVTQGFYVTPS-LSGDTVRLQ 173

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           I T        ++       +V+  DTTV    G  I LAG  +     
Sbjct: 174 ISTNNDR----ISQERADVVKVQSTDTTVTGRLGEWITLAGYNQQSQAD 218


>gi|317485728|ref|ZP_07944598.1| ribose-5-phosphate isomerase [Bilophila wadsworthia 3_1_6]
 gi|316923010|gb|EFV44226.1| ribose-5-phosphate isomerase [Bilophila wadsworthia 3_1_6]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 23/171 (13%)

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHD 311
              L AL        L        S Q     +  +H Y      + S     + +T  +
Sbjct: 9   SGTLKALREWGRATQLTSAGGLLTSNQPLPVLAIKRHAYLAGMSLSTSDYNQTSEITPGE 68

Query: 312 Y--GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRKADTTVELP 363
              G  +   P +L+  R+ L+    +S                +P    R      ++ 
Sbjct: 69  VTTGFAMTIIPHILADRRVILQYNITLSALDDMQEIDREEVYVQLPQVSTRSFAQRSKMK 128

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            G T+VLAG  +                   G L      +  +T + +  
Sbjct: 129 MGQTLVLAGFEQSRQTANNA----------FGILNTGRDADYGKTLLVVTI 169


>gi|325274767|ref|ZP_08140803.1| NolW domain protein [Pseudomonas sp. TJI-51]
 gi|324100111|gb|EGB97921.1| NolW domain protein [Pseudomonas sp. TJI-51]
          Length = 266

 Score = 44.3 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 8/109 (7%)

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
             + A  GQ A    G      + S+       ++    +     + TPT LS   + L+
Sbjct: 137 QQVQASEGQPALIQVGQSIPVTSTSTDGYGRFQSNTEYRNVTQGFYVTPT-LSGETVRLQ 195

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           I T        ++       +V+  DTT+    G  I LAG  +     
Sbjct: 196 ISTNNDR----ISQERADVVKVQSTDTTITGKLGEWITLAGYNQQSQAD 240


>gi|167619352|ref|ZP_02387983.1| probable phage-related secreted protein [Burkholderia thailandensis
           Bt4]
          Length = 63

 Score = 44.3 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+  T   L  G  +VL GL++D     + G   L       +       +++ TE+ 
Sbjct: 2   NTRQLQTVTRLTDGEVVVLGGLIQDRNSTARSGYAWLP------SFLDGRSSSKQRTEVL 55

Query: 412 IAA 414
           +  
Sbjct: 56  LVL 58


>gi|313201537|ref|YP_004040195.1| nolw domain-containing protein [Methylovorus sp. MP688]
 gi|312440853|gb|ADQ84959.1| NolW domain protein [Methylovorus sp. MP688]
          Length = 269

 Score = 44.3 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 13/112 (11%)

Query: 277 LTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +    G+ A    G +  Y       T S +    +    D        P  L       
Sbjct: 144 VNVAEGERAFIRVGQRVPYTQQWLVLTQSYAQRIRNTQFQDITTGFAVRPRALGD----- 198

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +++ E++  +    AG +  +   +  T V +  G  + + G ++      +
Sbjct: 199 QVEVEITPRIAQAGAGGVIDFE--ELSTIVMVRPGEWLDIGGTMQSRDDVSR 248


>gi|253999512|ref|YP_003051575.1| NolW domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253986191|gb|ACT51048.1| NolW domain protein [Methylovorus sp. SIP3-4]
          Length = 286

 Score = 44.3 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 13/112 (11%)

Query: 277 LTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +    G+ A    G +  Y       T S +    +    D        P  L       
Sbjct: 161 VNVAEGERAFIRVGQRVPYTQQWLVLTQSYAQRIRNTQFQDITTGFAVRPRALGD----- 215

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +++ E++  +    AG +  +   +  T V +  G  + + G ++      +
Sbjct: 216 QVEVEITPRIAQAGAGGVIDFE--ELSTIVMVRPGEWLDIGGTMQSRDDVSR 265


>gi|189348545|ref|YP_001941741.1| type II secretory pathway component [Burkholderia multivorans ATCC
           17616]
 gi|189338683|dbj|BAG47751.1| type II secretory pathway component [Burkholderia multivorans ATCC
           17616]
          Length = 518

 Score = 44.3 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 89/278 (32%), Gaps = 46/278 (16%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSF 230
            + A  +  K++   N     QV + V   ++  +   Q G    +      +     + 
Sbjct: 252 TKEAADNIGKLLKHENAISTRQVAITVRTLQIALNKGSQAGVNADVVFNAMHAGLARYAI 311

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAI---RTLAEPTLTAISGQS 284
           +        + GG   V  +     F     V++AL +        T+ + TL  +    
Sbjct: 312 SFTSPTSLATGGGAVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVSV 371

Query: 285 ASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           ASF S       T SS +   +           +TT D+    +  P V    +I L   
Sbjct: 372 ASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFV---NVLPAVNDHNQIVLAYW 428

Query: 334 TEVSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVLAGLLKDD-IQQL 381
            + S+      +    S + ++            D T+ L  G T+VL G + D      
Sbjct: 429 ADSSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTT 488

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             GI  L              +N+ +T   I     +V
Sbjct: 489 NTGIAGL-----------TGSWNKSKTFQVIMLKATVV 515


>gi|308274558|emb|CBX31157.1| hypothetical protein N47_E46690 [uncultured Desulfobacterium sp.]
          Length = 270

 Score = 44.3 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 26/135 (19%)

Query: 277 LTAISGQSASFTSGGQHLYKTV------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +   SG  A   +G +  Y             G  +V   +    L  TP V+      +
Sbjct: 144 INVASGSPAYIITGKRVPYNERWINLNRRHPVGMDTVVFENVETGLEVTP-VIRGDHADI 202

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           +I   +S+   G         R  +A T + +P G  + + G  K+  +           
Sbjct: 203 KIVPRISDRKQGG------IIRYSEAATVINVPLGKWVTIGGADKNQNE----------- 245

Query: 391 IPILGALFRNSRFNR 405
             +L   F NS  ++
Sbjct: 246 --VLQTFFENSGKDK 258


>gi|167755307|ref|ZP_02427434.1| hypothetical protein CLORAM_00820 [Clostridium ramosum DSM 1402]
 gi|167704246|gb|EDS18825.1| hypothetical protein CLORAM_00820 [Clostridium ramosum DSM 1402]
          Length = 1622

 Score = 44.3 bits (103), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 69/195 (35%), Gaps = 37/195 (18%)

Query: 46   KGKKISIGLNKVIILQVPVDVQDVL-------VSDPTKADVVVHSPRTMYLFGKNVGQAN 98
              + + + +    I+   V  + V         +D     V     +   + G   G+  
Sbjct: 1210 ANQDLKLAVGNSQIIGAKVYPEAVFPFKVIFDAADNEIVSV----DKDGLVTGLKAGKTT 1265

Query: 99   VILIGHDGKQML---NLDI-LIERDIAHLEMTLRRF--------IA-----DSNIRVEMV 141
            V +   D  ++     +++  +      +  +++          +      +  I+   +
Sbjct: 1266 VRVYSQDNPEIYQDCTIEVTEVIDSSKEIADSIKELTIINNQIVLPVVEGYEITIKSSSI 1325

Query: 142  SDTVVLHGMV-RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLK 199
             + + L G V  + QD Q A+ L+        +N+  N  S     ++ +A +D+ V ++
Sbjct: 1326 PNIIDLDGKVTPSNQDEQVALVLAV-------KNKATNVVSDTANIIVTVAKKDETVMIE 1378

Query: 200  VTIAEVRRDILKQIG 214
              I +V   + ++  
Sbjct: 1379 FDIIDVVLKVYQEFD 1393


>gi|298155844|ref|YP_003717670.1| putative exported pilus biosynthesis protein [Escherichia coli ETEC
           1392/75]
 gi|156121667|gb|ABU50043.1| LngD [Escherichia coli]
 gi|297374441|emb|CBL93503.1| putative exported pilus biosynthesis protein [Escherichia coli ETEC
           1392/75]
          Length = 492

 Score = 43.9 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 12/176 (6%)

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           R +       +   G+S G   S  +   G          V+     F+    + A+ + 
Sbjct: 273 RKLGAAANLSYLNGGTSIGIDTSLLSSLSGATFGRDFIVPVENT-QNFNITGKIEAIYQL 331

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDY--GVVLH 317
           T    L   T    +             Y +  + T         T++ T     G    
Sbjct: 332 TGKNVLQSGTFITRNNVPVPVNLTQTQNYISGRTQTTNSLTSVSDTTIETDKVITGSSFI 391

Query: 318 FTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            TP VLS G I +      +    +    +  +P+    +   T  L  G  +++A
Sbjct: 392 LTPRVLSDGSIEVSSAFTKKTLNSIENFESVQLPNVSTTEMFNTSVLKPGTLMMVA 447


>gi|104782518|ref|YP_609016.1| type II secretion system protein D; signal peptide [Pseudomonas
           entomophila L48]
 gi|95111505|emb|CAK16225.1| putative type II secretion system protein D; putative signal
           peptide [Pseudomonas entomophila L48]
          Length = 244

 Score = 43.9 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
             + A  GQ A    G      + ++       T+    +     + TP  LS   + L+
Sbjct: 115 QQVQASEGQPALIQVGQSVPITSTATDGYGRLQTNTEYRNVTQGFYVTPR-LSGDTVRLQ 173

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           I T        ++       +V+  DTTV    G  I LAG  +     
Sbjct: 174 ISTNNDR----MSQERPDVVKVQSTDTTVTGKLGEWITLAGYNQQSQAD 218


>gi|167518806|ref|XP_001743743.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777705|gb|EDQ91321.1| predicted protein [Monosiga brevicollis MX1]
          Length = 7357

 Score = 43.9 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 107/345 (31%), Gaps = 27/345 (7%)

Query: 33   NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            +A V++  +   G+   I   + + +          V++     A +  +S  T  +   
Sbjct: 4753 SAPVVSRVEPVQGQVGTIITIVGEQLFGGADEKPTAVVIGGTPVASIDSNSNNTHVIVTL 4812

Query: 93   NV----GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
                  G AN+ L   +G  +      +E D +     +   I +           VVL 
Sbjct: 4813 AEPAVIGPANISLTSANGAPI------VESDTSLFTYLVAGEITNVQPATGTRGTRVVLE 4866

Query: 149  GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
            G    +  +     ++   L  S    +  ++    + L   AG     + V I E    
Sbjct: 4867 GTNLDLGST-----VTRVLLGGSVITDFDVAAGAGQIVLTAPAGTAGGPVSV-IIETEHG 4920

Query: 209  ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                +    +   +    S + A+  GG  V+  G   + G     +   VL      T 
Sbjct: 4921 ATATLASSWTFVPAGVISSIAPASGQGGALVTITGTSLLGG---ASNVSHVLVDGINVTR 4977

Query: 269  IRTLAEPTLTAISG-QSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLS 324
            I +L+   +      Q A   +G +   + V+ S     +   T     +V    P    
Sbjct: 4978 IESLSNTEIVVEVAVQPAGDVTGVERSVRVVADSGAFVESLGFTYTPAPIVTSVEPLQGQ 5037

Query: 325  PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             G    R+    S    G +A        R A T +       +V
Sbjct: 5038 KGT---RVTISGSNLRQGASAVSAVLLAGRSA-TVISEDDSEVVV 5078



 Score = 43.9 bits (102), Expect = 0.066,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 99/342 (28%), Gaps = 21/342 (6%)

Query: 33   NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            +A V++  +   G+   I   + + +          V++     A +  +S  T  +   
Sbjct: 2427 SAPVVSRVEPVQGQVGTIITIVGEQLFGGADEKPTAVVIGGTPVASIDSNSNNTHVIVTL 2486

Query: 93   NV----GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
                  G AN+ L   +G  +      +E D +     +   I +           VVL 
Sbjct: 2487 AEPAVIGPANISLTSANGAPI------VESDTSLFTYLVAGEITNVQPATGTRGTRVVLE 2540

Query: 149  GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
            G    +  +     ++   L  S    +  ++    + L   AG     + V I E    
Sbjct: 2541 GTNLDLGST-----VTRVLLGGSVITDFDVAAGAGQIVLTAPAGTAGGPVSV-IIETEHG 2594

Query: 209  ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV-LHALERAT 267
                +    +   +    S + A+  GG  V+  G   + G  +        ++     +
Sbjct: 2595 ATATLASSWTFVPAGVISSIAPASGQGGALVTITGTSLLGGASNVSHVLVDGINVTRIES 2654

Query: 268  AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               T     +        +   G   +     +   +   T     +V    P     G 
Sbjct: 2655 LSNTEIVVEVAVQPAGDVTGVEGSVRVVADSGAFVESLGFTYTPAPIVTSVEPLQGQKGT 2714

Query: 328  IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
               R+    S    G +A        R A T +       +V
Sbjct: 2715 ---RVTISGSNLRQGASAVSAVLLAGRSA-TVISEDDSEVVV 2752


>gi|161522585|ref|YP_001585514.1| type II secretory pathway component PulD-like protein [Burkholderia
           multivorans ATCC 17616]
 gi|160346138|gb|ABX19222.1| type II secretory pathway component PulD-like protein [Burkholderia
           multivorans ATCC 17616]
          Length = 534

 Score = 43.9 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 89/278 (32%), Gaps = 46/278 (16%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSF 230
            + A  +  K++   N     QV + V   ++  +   Q G    +      +     + 
Sbjct: 268 TKEAADNIGKLLKHENAISTRQVAITVRTLQIALNKGSQAGVNADVVFNAMHAGLARYAI 327

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAI---RTLAEPTLTAISGQS 284
           +        + GG   V  +     F     V++AL +        T+ + TL  +    
Sbjct: 328 SFTSPTSLATGGGAVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVSV 387

Query: 285 ASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           ASF S       T SS +   +           +TT D+    +  P V    +I L   
Sbjct: 388 ASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFV---NVLPAVNDHNQIVLAYW 444

Query: 334 TEVSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVLAGLLKDD-IQQL 381
            + S+      +    S + ++            D T+ L  G T+VL G + D      
Sbjct: 445 ADSSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTT 504

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             GI  L              +N+ +T   I     +V
Sbjct: 505 NTGIAGL-----------TGSWNKSKTFQVIMLKATVV 531


>gi|134287561|ref|YP_001109727.1| Type II secretory pathway component PulD-like protein [Burkholderia
           vietnamiensis G4]
 gi|134132211|gb|ABO59946.1| Type II secretory pathway component PulD-like protein [Burkholderia
           vietnamiensis G4]
          Length = 534

 Score = 43.9 bits (102), Expect = 0.063,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 80/247 (32%), Gaps = 35/247 (14%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSF 230
            + A  +  K++N  N     QV + V   ++  +   Q G    +      +     + 
Sbjct: 268 TKEAADNIGKLLNHENAISTRQVAITVRTLQIALNKGSQAGMNADVVFNAMHAGLARYAI 327

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQS--- 284
           +        + GG   V  +     F     V++AL +          T   ++G     
Sbjct: 328 SFMSPTSLATGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVSI 387

Query: 285 ASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           ASF S       T SS +   +           +TT D+    +  P V    +I L   
Sbjct: 388 ASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFV---NVLPAVNDHNQIVLAYW 444

Query: 334 TEVSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVLAGLLKDD-IQQL 381
            + S+      +    S + ++            D T+ L  G T+VL G + D      
Sbjct: 445 ADSSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTT 504

Query: 382 KEGIPLL 388
             GI  L
Sbjct: 505 NTGIAGL 511


>gi|331092338|ref|ZP_08341165.1| hypothetical protein HMPREF9477_01808 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401571|gb|EGG81154.1| hypothetical protein HMPREF9477_01808 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 317

 Score = 43.1 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++       + +PLL  IP++G LF  + +      I I      V
Sbjct: 123 IQFTDTFQIDKVPLLGDIPVIGPLFFQNSYITTYLGILIFLIAAFV 168


>gi|198420230|ref|XP_002121268.1| PREDICTED: similar to Fc fragment of IgG binding protein [Ciona
           intestinalis]
          Length = 2313

 Score = 43.1 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 96/272 (35%), Gaps = 36/272 (13%)

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDI---LIERDIAHLEMTLRRFI---------AD 133
            +YL  K VG      I   G     ++     +   I     T  + +           
Sbjct: 407 EVYLSLK-VGSTLAFAIDTTGSMSGEINAAKSRVSAIINETTGTTDQPLFFVLSEFNDPR 465

Query: 134 SNIRVEMVSDTVVLHGMVR---TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
               +   S T +L G+     +    +  + L+  +      N    S+ + V+ ++  
Sbjct: 466 VGPTLATTSPTAILTGLNALRASGGGDEPELALAGIY------NALIASTKRSVVFMITD 519

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           A    V L+  +  + + ++++I     +T +   PS +    +     S GG  +V   
Sbjct: 520 ATAKDVNLETRV--IAQSVIRKIRIVSLLTKNL--PSAAGFPLYNRISSSSGGLVTVTSK 575

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATS 306
            D      +  AL     ++      +TA   Q++SF         T+    +S TG  +
Sbjct: 576 SDITGTSQLFRALTEQGQVKLKIALNVTA---QNSSFVMDSTITRVTILLTRTSLTGNLN 632

Query: 307 V--TTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           V   T+  G  + F   V + G + +++ + V
Sbjct: 633 VASITNPAG-SVGFKELVNNDGLVLIQLNSTV 663


>gi|237734198|ref|ZP_04564679.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382758|gb|EEO32849.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 1602

 Score = 43.1 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 69/195 (35%), Gaps = 37/195 (18%)

Query: 46   KGKKISIGLNKVIILQVPVDVQDVL-------VSDPTKADVVVHSPRTMYLFGKNVGQAN 98
              + + + +    I+   V  + V         +D     V     +   + G   G+  
Sbjct: 1185 ANQDLKLAVGNSQIIGAKVYPEAVFPFKVIFDAADNEIVSV----DKDGLVTGLKAGKTT 1240

Query: 99   VILIGHDGKQML---NLDI-LIERDIAHLEMTLRRF--------IA-----DSNIRVEMV 141
            V +   D  ++     +++  +      +  +++          +      +  I+   +
Sbjct: 1241 VRVYSQDNPEIYQDCTIEVTEVIDSSKEIADSIKELTIINNQIVLPVVEGYEITIKSSSI 1300

Query: 142  SDTVVLHGMV-RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLK 199
             + + L G V  + QD Q A+ L+        +N+  N  S     ++ +A +D+ V ++
Sbjct: 1301 PNIIDLDGKVTPSNQDEQVALVLAV-------KNKATNVVSDTANIIVTVAKKDETVMIE 1353

Query: 200  VTIAEVRRDILKQIG 214
              I +V   + ++  
Sbjct: 1354 FDITDVVLKVYQEFD 1368


>gi|311109976|ref|YP_003982827.1| lipoprotein 4 [Achromobacter xylosoxidans A8]
 gi|310764665|gb|ADP20112.1| lipoprotein 4 [Achromobacter xylosoxidans A8]
          Length = 556

 Score = 43.1 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 81/239 (33%), Gaps = 35/239 (14%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHAL 263
           V  +     G    +  S++  + + AA  G    + G   S   G       + ++ AL
Sbjct: 315 VSVNDQHDAGIDWRVIYSTASAAAAGAAPTGTMSTAAGTIASATVGSGPFKGSDAIIKAL 374

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------------SVT 308
           +            L+A++ +  ++       Y     +TG T               SV 
Sbjct: 375 DEIGTTTRSTAIPLSALNRRPITYADRKTFSYINEVQTTGLTSSDSSNGSFSTVPNVSVR 434

Query: 309 THDYGVV--LHFTPTVLSPGRIGLRI--QTEVSEPVIGV------NAGDMPSYRVRK--A 356
             D  V   L   P     G+I L I   + +++P+  +      N  ++    VR    
Sbjct: 435 QKDVTVGQFLTLVPDAQEDGQILLTISYDSTINDPLQTIKFGDSKNGIEIQQLTVRGNGM 494

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET--EIFIA 413
              V L SG  +V+AG  KD  Q  ++      K PI   LF  +     +    + I 
Sbjct: 495 VQQVALQSGQPLVIAGFQKDQDQTSRQR--FDEKAPI---LFGGANSTNNQKLYNLIIV 548


>gi|153800448|ref|ZP_01955034.1| CofD [Vibrio cholerae MZO-3]
 gi|124124074|gb|EAY42817.1| CofD [Vibrio cholerae MZO-3]
          Length = 486

 Score = 43.1 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 78/247 (31%), Gaps = 21/247 (8%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            VE + +  +  G    I+DS          L          +   K++       + Q 
Sbjct: 205 DVETIVEHYLTSGQYSLIKDSS---------LIAINARPSEFAEVNKILKKFKEDNQRQF 255

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFS 255
            +   I  + +   + +G   +++    G +            S    D    G   + +
Sbjct: 256 VVTYKIFTLDKSKEQSLGGGVNLSHQVPGTTVGITTGMLSSLGSGINFDRQFYGDGKKLN 315

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVT 308
               L AL + T  + L   +    +             + +  + T         +SV 
Sbjct: 316 MTGQLEALFKLTGSKLLQSGSFITRNNSPIPLNLTNSKYFVSGRTQTKNDNNTVTDSSVE 375

Query: 309 THDY--GVVLHFTPTVLSPGRIG-LRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPS 364
           T     G     TP VLS G+I  L   T+ +   I +  +  +P+    +   T  +  
Sbjct: 376 TSQIVTGTSFILTPRVLSDGKIEVLSGFTKKTLNSIDLFESVQLPNVTTTEMFNTSTVTP 435

Query: 365 GGTIVLA 371
           G  +++A
Sbjct: 436 GSLLMVA 442


>gi|6176558|gb|AAF05619.1|AF190907_1 XpsD [Xanthomonas oryzae pv. oryzae]
          Length = 124

 Score = 43.1 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 24/119 (20%)

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-------------- 222
           A SS + V+  L++    QV ++  +AEV      Q G       S              
Sbjct: 10  AWSSIRDVIEKLDVM-PMQVHIEAQVAEVNLTGKLQYGVNWYFENSVNAAADSAANSTGI 68

Query: 223 ------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                 +S   ++   D  GK   E G    +      +  +++HAL+  T +R L  P
Sbjct: 69  GAGAGLASAAGRNIWGDIAGKITGEKG---AQWTFLGKNAASIIHALDEVTNVRLLQTP 124


>gi|313498035|gb|ADR59401.1| NolW domain protein [Pseudomonas putida BIRD-1]
          Length = 246

 Score = 42.7 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 8/109 (7%)

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
             + A  GQ A    G      + S+       ++    +     + TP+ LS   + L 
Sbjct: 117 QQVQASEGQPALIQVGQSIPITSTSTDGYGRIQSNTEYRNVTQGFYVTPS-LSGETVRLE 175

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           I +                 +V+  DTTV    G  I LAG  +     
Sbjct: 176 ISSNNDRISHERAD----VVKVQSTDTTVTGKLGEWITLAGFNQQSQAD 220


>gi|195133198|ref|XP_002011026.1| GI16315 [Drosophila mojavensis]
 gi|193907001|gb|EDW05868.1| GI16315 [Drosophila mojavensis]
          Length = 1279

 Score = 42.7 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129
           V+DP  A     S +   L GK++G+ +V ++    G+ +   +I +  D   L   + R
Sbjct: 648 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVSLSRLIVR 702

Query: 130 FIADSNIRVEMVS 142
            I+   + +   +
Sbjct: 703 VISGLQLTITPEN 715


>gi|332828586|gb|EGK01286.1| hypothetical protein HMPREF9455_02478 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 307

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M+  +  F+ ++ +   SS  S   +P      A +I    + +   ++ ++ ++ +   
Sbjct: 1   MKSFKYIFYILLIVLGISSCKSDNDMPEFPTKYARII-QKTITVKTAERYNVTIHPIFDS 59

Query: 61  QVPVDVQDV-LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
           +     + V  VSD +   +  HS  ++ + G   GQ  + L   DGK      + +
Sbjct: 60  EETAKEKFVWSVSDESLVSLHTHSDNSLTIKGLVPGQTTLKLESEDGKLQYYSTVNV 116


>gi|195565393|ref|XP_002106286.1| GD16787 [Drosophila simulans]
 gi|194203660|gb|EDX17236.1| GD16787 [Drosophila simulans]
          Length = 1400

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 58  IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILI 116
            +  +   +  V  +DP  A     S +   L GK++G+ +V ++    G+ +   +I +
Sbjct: 623 RVTDLVQPLLRV--ADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRV 675

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVS 142
             D  +L   + R I+   + +   +
Sbjct: 676 GSDKVNLSKLIVRVISGLQLTISPDN 701


>gi|195469906|ref|XP_002099877.1| GE16734 [Drosophila yakuba]
 gi|194187401|gb|EDX00985.1| GE16734 [Drosophila yakuba]
          Length = 1410

 Score = 42.3 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129
           V+DP  A     S +   L GK++G+ +V ++    G+ +   +I +  D  +L   + R
Sbjct: 634 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVNLSKLIVR 688

Query: 130 FIADSNIRVEMVS 142
            I+   + +   +
Sbjct: 689 VISGLQLTISPDN 701


>gi|194762572|ref|XP_001963408.1| GF20383 [Drosophila ananassae]
 gi|190629067|gb|EDV44484.1| GF20383 [Drosophila ananassae]
          Length = 1260

 Score = 42.3 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129
           V+DP  A     S +   L GK++G+ +V ++    G+ +   +I +  D  +L   + R
Sbjct: 640 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVNLSKLIVR 694

Query: 130 FIADSNIRVEMVS 142
            I+   + +   +
Sbjct: 695 VISGLQLTISPDN 707


>gi|195340420|ref|XP_002036811.1| GM12468 [Drosophila sechellia]
 gi|194130927|gb|EDW52970.1| GM12468 [Drosophila sechellia]
          Length = 1401

 Score = 42.3 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129
           V+DP  A     S +   L GK++G+ +V ++    G+ +   +I +  D  +L   + R
Sbjct: 634 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVNLSKLIVR 688

Query: 130 FIADSNIRVEMVS 142
            I+   + +   +
Sbjct: 689 VISGLQLTISPDN 701


>gi|24640068|ref|NP_572300.1| CG14446 [Drosophila melanogaster]
 gi|7290685|gb|AAF46133.1| CG14446 [Drosophila melanogaster]
          Length = 1399

 Score = 42.3 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129
           V+DP  A     S +   L GK++G+ +V ++    G+ +   +I +  D  +L   + R
Sbjct: 634 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVNLSKLIVR 688

Query: 130 FIADSNIRVEMVS 142
            I+   + +   +
Sbjct: 689 VISGLQLTISPDN 701


>gi|26990809|ref|NP_746234.1| NolW domain protein [Pseudomonas putida KT2440]
 gi|24985815|gb|AAN69698.1|AE016606_1 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 267

 Score = 42.3 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 8/109 (7%)

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
             + A  GQ A    G      + S+       ++    +     + TP+ LS   + L+
Sbjct: 138 QQVQASEGQPALIQVGQSIPITSTSTDGYGRIQSNTEYRNVTQGFYVTPS-LSGETVRLQ 196

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           I +                 +V+  DTTV    G  I LAG  +     
Sbjct: 197 ISSNNDRISHERAD----VVKVQSTDTTVTGKLGEWITLAGFNQQSQAD 241


>gi|195174728|ref|XP_002028124.1| GL21310 [Drosophila persimilis]
 gi|194115864|gb|EDW37907.1| GL21310 [Drosophila persimilis]
          Length = 1432

 Score = 42.3 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129
           V+DP  A     S +   L GK++G+ +V ++    G+ +   +I +  D  +L   + R
Sbjct: 631 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVNLSKLIVR 685

Query: 130 FIADSNIRVEMVS 142
            I+   + +   +
Sbjct: 686 VISGLQLTITPDN 698


>gi|195045927|ref|XP_001992057.1| GH24421 [Drosophila grimshawi]
 gi|193892898|gb|EDV91764.1| GH24421 [Drosophila grimshawi]
          Length = 1509

 Score = 42.3 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 58  IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILI 116
            +  +   +  V  +DP  A     S +   L GK++G+ +V ++    G+ +   +I +
Sbjct: 671 RVTDLVQPLLRV--ADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRV 723

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVS 142
             D  +L   + R I+   + +   +
Sbjct: 724 GSDKVNLNKLIVRVISGLQLTITPEN 749


>gi|120556397|ref|YP_960748.1| NolW domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120326246|gb|ABM20561.1| NolW domain protein [Marinobacter aquaeolei VT8]
          Length = 264

 Score = 42.3 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 83/292 (28%), Gaps = 73/292 (25%)

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
            A+ ++      ++  L+    R    + + +R     S + V      +V+ G    + 
Sbjct: 22  TASTVVWAQSEARVYELN---NRTADDIALQIRELYQQSPVTVTARGQQLVVRGEPALLD 78

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           +                           ++  +++    Q+ + V              +
Sbjct: 79  E------------------------IGTLVQSMDVP-PVQMRISVR-------------Y 100

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           +  I G  SG   S +    G  V                         R  +  +  E 
Sbjct: 101 RQDIGGKQSGGGVSLSNGSAGASVER-----------------------RTISTNSTRER 137

Query: 276 TLTAISGQSASFTSGG--QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            L    GQSA  TSG      +        A  +   +       +P  +S   + L I 
Sbjct: 138 QLIVQDGQSAHITSGNVRTLPFAVKGGRNPAAILQQVETRSGFVVSPQAISNQAVELSIV 197

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           +   +P        +P Y      T   +  G  + L G  +  + Q ++GI
Sbjct: 198 SFEEDPAA------LPGYETEALMTIRRVEPGQWVSLGG-TRTSMNQEQQGI 242


>gi|108763400|ref|YP_629627.1| hypothetical protein MXAN_1370 [Myxococcus xanthus DK 1622]
 gi|108467280|gb|ABF92465.1| hypothetical protein MXAN_1370 [Myxococcus xanthus DK 1622]
          Length = 192

 Score = 42.3 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 25/55 (45%)

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
            + + V V      +  +  P  + + G ++G + V++     +Q L++ + + +
Sbjct: 138 ENAERVRVQSSAVVEASLGEPNQIMVQGLSLGVSEVLVWRQGSRQPLSVRVEVAK 192


>gi|194896140|ref|XP_001978420.1| GG19574 [Drosophila erecta]
 gi|190650069|gb|EDV47347.1| GG19574 [Drosophila erecta]
          Length = 1405

 Score = 42.3 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129
           V+DP  A     S +   L GK++G+ +V ++    G+ +   +I +  D  +L   + R
Sbjct: 634 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVNLSKLIVR 688

Query: 130 FIADSNIRVEMVS 142
            I+   + +   +
Sbjct: 689 VISGLQLTISPDN 701


>gi|195457020|ref|XP_002075390.1| GK15395 [Drosophila willistoni]
 gi|194171475|gb|EDW86376.1| GK15395 [Drosophila willistoni]
          Length = 1479

 Score = 42.3 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 58  IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILI 116
            +  +   +  V  +DP  A     S +   L GK++G+ +V ++    G+ +   +I +
Sbjct: 659 RVTDLVQPLLRV--ADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRV 711

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVS 142
             D   L   + R I+   + +   +
Sbjct: 712 GSDKVTLSKLIVRVISGLQLTITPDN 737


>gi|195399071|ref|XP_002058144.1| GJ15653 [Drosophila virilis]
 gi|194150568|gb|EDW66252.1| GJ15653 [Drosophila virilis]
          Length = 1395

 Score = 42.3 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 58  IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILI 116
            +  +   +  V  +DP  A     S +   L GK++G+ +V ++    G+ +   +I +
Sbjct: 661 RVTDLVQPLLRV--ADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRV 713

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVS 142
             D  +L   + R I+   + +   +
Sbjct: 714 GSDKVNLSKLIVRVISGLQLTITPEN 739


>gi|148546987|ref|YP_001267089.1| NolW domain-containing protein [Pseudomonas putida F1]
 gi|148511045|gb|ABQ77905.1| NolW domain protein [Pseudomonas putida F1]
          Length = 244

 Score = 42.3 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 8/109 (7%)

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
             + A  GQ A    G      + S+       ++    +     + TP+ LS   + L+
Sbjct: 115 QQVQASEGQPALIQVGQSIPITSTSTDGYGRIQSNTEYRNVTQGFYVTPS-LSGETVRLQ 173

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           I +                 +V+  DTTV    G  I LAG  +     
Sbjct: 174 ISSNNDRISHERAD----VVKVQSTDTTVTGKLGEWITLAGFNQQSQAD 218


>gi|160893224|ref|ZP_02074012.1| hypothetical protein CLOL250_00770 [Clostridium sp. L2-50]
 gi|156865307|gb|EDO58738.1| hypothetical protein CLOL250_00770 [Clostridium sp. L2-50]
          Length = 686

 Score = 41.9 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG--KGKKISIGLNKVIILQVPVD 65
                ++ L  +        P++E+ AA   +  V +     K++++   K   L+  V 
Sbjct: 9   IKRFFALVLAFAVAVSILTVPVQESYAAGGKVKTVAVTNLPAKQLTLKKGKSFTLKTKVS 68

Query: 66  V--QDVL------VSDPTKADVVVHSPRTMYLFGKNVGQANVILIG-HDGKQMLNLDILI 116
           V  + V        S+   A V         +  K  G A + +    D K+   + + +
Sbjct: 69  VSGKKVSKAVTYKTSNKKVATVNAKGK----ITAKKKGTATITIYSKADKKKTCKIKVTV 124

Query: 117 ERDIAHLE 124
              +  ++
Sbjct: 125 GTPVTKVK 132


>gi|254224924|ref|ZP_04918539.1| Type II secretory pathway, component PulD [Vibrio cholerae V51]
 gi|125622612|gb|EAZ50931.1| Type II secretory pathway, component PulD [Vibrio cholerae V51]
          Length = 405

 Score = 41.9 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 3/134 (2%)

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF 245
           LL    +++V L   IA +     +Q+ F   +   S+   ++   D G    S G  D 
Sbjct: 253 LLVRGTQEEVKLAKRIAALIDVKRRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDI 312

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            V    +   F     AL      R++ E  L A+  Q   F  G +        S    
Sbjct: 313 VVPPFTETTDFLKNFQALYTNGIARSVYETNLLALENQQGQF--GKKQTATLTLISDKEV 370

Query: 306 SVTTHDYGVVLHFT 319
                +    L+ T
Sbjct: 371 KTEKIEADNSLYVT 384


>gi|198469697|ref|XP_001355093.2| GA12993 [Drosophila pseudoobscura pseudoobscura]
 gi|198146992|gb|EAL32149.2| GA12993 [Drosophila pseudoobscura pseudoobscura]
          Length = 1449

 Score = 41.9 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129
           V+DP  A     S +   L GK++G+ +V ++    G+ +   +I +  D  +L   + R
Sbjct: 651 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVNLSKLIVR 705

Query: 130 FIADSNIRVEMVS 142
            I+   + +   +
Sbjct: 706 VISGLQLTITPDN 718


>gi|149378239|ref|ZP_01895952.1| hypothetical protein MDG893_04884 [Marinobacter algicola DG893]
 gi|149357466|gb|EDM45975.1| hypothetical protein MDG893_04884 [Marinobacter algicola DG893]
          Length = 261

 Score = 41.9 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 79/239 (33%), Gaps = 30/239 (12%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV-TIAEVRRD 208
             RT Q +QR+ E     + +   +   + +++     + + GE +V  ++  + E    
Sbjct: 29  EARTYQMAQRSAEGVAQQIRELYPDGQVSITARG--QQMVVRGEPEVLDEIGRLVETMDV 86

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
              Q+               +  +       + GG FSV       + +  + A  + T 
Sbjct: 87  APSQMRI-------------TVRSRHNVDAKTGGGGFSVN------NNQVSVQAERKVTT 127

Query: 269 IRTLAEPTLTAISGQSASFTSGG--QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
            R   E TL    GQSA  +SG               A  +   +       +P V+S  
Sbjct: 128 TRRNQERTLIVQDGQSAHISSGQVRTVPVAIRGGRNPAAFLEQVETRSGFLVSPQVISDQ 187

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            + L I +   +P      G+ P Y      T   +  G  + L    +      + GI
Sbjct: 188 AVELNIVSFEEDPK-----GNPPGYDTEAVMTIRRVEPGEWVELGS-TRQQRVGERSGI 240


>gi|89885736|ref|YP_515934.1| hypothetical protein Rfer_4249 [Rhodoferax ferrireducens T118]
 gi|89347734|gb|ABD71936.1| hypothetical protein Rfer_4249 [Rhodoferax ferrireducens T118]
          Length = 483

 Score = 41.9 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 64/427 (14%), Positives = 130/427 (30%), Gaps = 71/427 (16%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQ---- 96
           +     +++    ++  +L+    +    ++D   AD++  H+  T+ + G  +G     
Sbjct: 73  LPRSTSQRMPPVFDQSFVLREQTPL---AITD--VADIIRAHTGLTILINGDAIGSQRIG 127

Query: 97  ----ANV-ILIG----HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
                ++  L+       G     LD  I+   + +   +        I V         
Sbjct: 128 VDSVTSLKSLLDSTTSRFGMTWQYLDDAIQIQQSVVRTFVIDRPGFEAITV--------- 178

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVR 206
            G       +      ++   +       A  S+ +  N + +A     V     + EV 
Sbjct: 179 -GSAGAAAKTVTRDPWADILDAIRVVAPRARVSAMRSSNSITVADSPANVARIAELLEVD 237

Query: 207 -RDILKQIGFQHSITGSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDR------- 253
            R   K++     +   +          F     GG+ +S     S+ G +         
Sbjct: 238 DRQASKKVTLLWKLVVFTKSVGGETGLGFNYLKTGGRKISFASPTSLVGTIASALKVESI 297

Query: 254 ----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT- 308
                  E +L+ L ++ +   + +          + F +  +  Y + S+   A+S T 
Sbjct: 298 SGESLGSEMILNLLNQSGSTVVVRDGITEIAQNGRSDFGTEKEVFYISRSTPGVASSSTT 357

Query: 309 ---------THDYGVVLHFTPTVLSPGRIGL-------RIQTEVSEPVIGVNAGDMPSYR 352
                    +   G+   F  TV    R+ L        +    S    G      P   
Sbjct: 358 SASVGLEQASVKVGLAGAFGATVFDSERMTLGYDFTVSSLDQLKSVTSAGTTLQS-PETT 416

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI-PLLSKIPILGALFRNSRFNREETEIF 411
            R +   V +  G T +L+    D     + GI P    I  LG    +        +  
Sbjct: 417 KRYSRGQVPIKHGETWILSAETSDSNSFDRRGILPAQGSI--LG---GSETAGSSRDQWL 471

Query: 412 IAATPFL 418
           +  TP L
Sbjct: 472 LLVTPIL 478


>gi|321460209|gb|EFX71254.1| hypothetical protein DAPPUDRAFT_216884 [Daphnia pulex]
          Length = 342

 Score = 41.9 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 65/210 (30%), Gaps = 21/210 (10%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ----VTLKVTIAEVRRDI 209
           +++   A  ++    ++   +Q++     +++N L I  +        ++    E   + 
Sbjct: 13  VEERPDATNVNNWHWTEKNASQWSKDKIDELLNGLEINDKIGNCVITEIEKMEGEASANN 72

Query: 210 LKQ---IGFQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFE 257
            K      F+ ++    SG       +  G  +             D +V         +
Sbjct: 73  RKAKLIFFFEWTLHLKWSGKVSGTTKNIEGTVIIPNLSDENNADEVDVNVTTSATGPDAD 132

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
            +   +      + + E     I      FT G     K      G  +  T D GV L 
Sbjct: 133 AMKQLMRTVG-AKVIREQLAKYIKSLKEDFTQGMILPKKDTEVKNGDKTQVTKDPGVKL- 190

Query: 318 FTP-TVLSPGRIGLRIQTEVSEPVIGVNAG 346
             P +V +P    L+I  +V       N  
Sbjct: 191 --PSSVSTPDMKQLQIGVKVEMQSYTCNQN 218


>gi|158298151|ref|XP_318358.4| AGAP004670-PA [Anopheles gambiae str. PEST]
 gi|157014468|gb|EAA13567.5| AGAP004670-PA [Anopheles gambiae str. PEST]
          Length = 1375

 Score = 41.6 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVL-VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH- 104
             ++S  +++   L+V   VQ +L V+DP  A       RT  L G+ +G+ +V ++   
Sbjct: 629 SGRVSYLISRRTGLRVTDLVQSLLRVADPKIA---TLRGRT--LQGRAMGRTDVQVLSPI 683

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
           +G+ +   ++ +  D   +   + + ++   +++ +  D  + +G + 
Sbjct: 684 NGRVIGAREVRVGSDKVTITRLMVKVVSG--LQLSISGDGSIDNGYIA 729


>gi|56550580|ref|YP_161646.1| hypothetical protein RMe0022 [Cupriavidus metallidurans CH34]
 gi|94152701|ref|YP_582103.1| hypothetical protein Rmet_6294 [Cupriavidus metallidurans CH34]
 gi|56410286|emb|CAI30168.1| hypothetical protein RMe0022 [Cupriavidus metallidurans CH34]
 gi|93359067|gb|ABF13153.1| Type II secretory pathway, component PulD [Cupriavidus
           metallidurans CH34]
          Length = 600

 Score = 41.6 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 102/306 (33%), Gaps = 41/306 (13%)

Query: 147 LHGMVRTIQDSQRAVELSE----TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
           L G+ ++I  +   V  +E    T +      + A  ++ +++          VTLK  +
Sbjct: 295 LEGVKKSILPAMTMVGSAELNPATGVLTLRDTKEAVDAADEIIRKQIAIYSRMVTLKFQM 354

Query: 203 AEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--SFE 257
            ++      + G   ++       + P  +  A      VS        G+        +
Sbjct: 355 IDLTVSDAGEAGVDWNVVLTKALQNLPGFTVNALSPATLVSSTAGGVGLGITSGGFNGTQ 414

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---------- 307
            +++AL++       +  T+         F    +  +   S ST AT+           
Sbjct: 415 AIVNALKQYG--TVTSGVTIPVSMRNRHGFQYNNRRTFSYASGSTPATTTAGGTGGIPGI 472

Query: 308 --TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKA--- 356
             +T   G  L       S   + L I  + S+           +  +  S +       
Sbjct: 473 ITSTATVGFKLAAYADATSRDDVNLTIALDQSKQDGPLEKFTSGSGNNQQSVQTINIVGK 532

Query: 357 ---DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK-IPILGALFRNSRFNREETEIFI 412
                 + + +G T+++A L +DD    +     L + +P+L  L  +   ++  T   +
Sbjct: 533 GIPKQDIIVRNGQTVLMAALDQDDTANTRR---TLGESLPML--LGGSQTVSKTRTFTLL 587

Query: 413 AATPFL 418
            AT  +
Sbjct: 588 LATVMV 593


>gi|325972807|ref|YP_004248998.1| ABC transporter inner membrane protein [Spirochaeta sp. Buddy]
 gi|324028045|gb|ADY14804.1| ABC-type transporter, integral membrane subunit [Spirochaeta sp.
           Buddy]
          Length = 310

 Score = 41.6 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 17/131 (12%)

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-----TVLSPGRIGLRI 332
               G       G      T+  +     V     G+++          + +   I L+ 
Sbjct: 34  VTNLGLEGLMLVGYFASAITIKMTEATLGVQALPVGILVGVAAGAIFSLLHAFASINLKA 93

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
              +S   I + A  +  Y  R         SG   +L G+++ +       IP+LS+IP
Sbjct: 94  DQVISGTAINMLAAALTVYLARTIS-----GSGNVRILMGIVRKN-------IPVLSQIP 141

Query: 393 ILGALFRNSRF 403
           I+G LF +  +
Sbjct: 142 IIGPLFFSQSY 152


>gi|15207769|dbj|BAB62900.1| CofD [Escherichia coli]
          Length = 485

 Score = 41.6 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 18/194 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250
            Q  L   I  + +  ++++G   ++   + G   S   D        G  F    V   
Sbjct: 249 RQFVLTYKIFTIDKKKVRKLGAAANLNYLNGG--TSIGIDTSLLSSLSGASFGRDFVVPV 306

Query: 251 --LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---- 304
             + +F+    + A+ + T    L   T    +             Y +  + T      
Sbjct: 307 EQIQKFNITGKIEAIYQLTGKNVLQSGTFITRNNVPVPVNLTQTQNYISGRTQTTNSLTS 366

Query: 305 ---TSVTTHDY--GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKAD 357
              T++ T     G     TP +LS G I +      +    +    +  +P+    +  
Sbjct: 367 VSDTTIETDKVITGSSFILTPRILSDGSIEVTSAFTKKTLNAIDNFESVQLPNVSTTEMF 426

Query: 358 TTVELPSGGTIVLA 371
            T  L  G  +++A
Sbjct: 427 NTSVLKPGTLMMVA 440


>gi|189467019|ref|ZP_03015804.1| hypothetical protein BACINT_03401 [Bacteroides intestinalis DSM
           17393]
 gi|189435283|gb|EDV04268.1| hypothetical protein BACINT_03401 [Bacteroides intestinalis DSM
           17393]
          Length = 488

 Score = 41.6 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 13/123 (10%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           MR        +    LF +     + P I    +  +N S + + +G+ +++       +
Sbjct: 1   MRTKLDFLLWICFFVLFVACEDHPQEPDIVAVTSVTLNESALSLKEGRNVTL----SATI 56

Query: 61  QVPVDVQDVLV----SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
             P D  +  V    SDP  A V  +      +     G A + +I  DG +     + +
Sbjct: 57  -TPDDATNQNVIWKSSDPDIATVDTNGK----IRALKPGTATITVITEDGGKTATCTVTV 111

Query: 117 ERD 119
           E  
Sbjct: 112 EPG 114


>gi|242022904|ref|XP_002431877.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212517218|gb|EEB19139.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 1141

 Score = 41.6 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVL-VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH- 104
             +++  +N+   L+V   VQ +L VSDP  A++     R   + G++VG+  V ++   
Sbjct: 618 SGRVNYFVNRRTWLRVTDLVQSLLRVSDPRIANL-----RGKIIRGRSVGRTEVQVLSPI 672

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            G+ +   ++ +  D   L   +   ++   + +    D+ V +G +     ++R
Sbjct: 673 TGRVIGAKEVRVGNDKVTLLRLIVNVVSGLQLSISP--DSTVENGYIAETSVTRR 725


>gi|330836048|ref|YP_004410689.1| nucleoside ABC transporter membrane protein [Spirochaeta coccoides
           DSM 17374]
 gi|329747951|gb|AEC01307.1| nucleoside ABC transporter membrane protein [Spirochaeta coccoides
           DSM 17374]
          Length = 310

 Score = 41.6 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I LR    +S   I + A  +  Y  R     V   SG   ++ G+++ D       +P
Sbjct: 88  SINLRADQTISGTAINMLAAALTVYLAR-----VFSGSGNIRIMMGIVRSD-------VP 135

Query: 387 LLSKIPILGALFRNSRF 403
           +LSKIP+LG LF +  +
Sbjct: 136 VLSKIPVLGPLFFSQTY 152


>gi|170722553|ref|YP_001750241.1| NolW domain-containing protein [Pseudomonas putida W619]
 gi|169760556|gb|ACA73872.1| NolW domain protein [Pseudomonas putida W619]
          Length = 244

 Score = 41.6 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
             + A  GQ A    G      + S+       ++    +     + TP+++      +R
Sbjct: 115 QQVQASEGQPALIQVGQSIPVTSTSTDGYGRIQSNTEYRNVTQGFYVTPSLIGE---TVR 171

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +Q   +   +     D+   +V+  DTTV    G  I LAG  +     
Sbjct: 172 LQISTNNDRMSHERADV--VKVQSTDTTVTGKLGEWITLAGFNQQSQAD 218


>gi|15225516|ref|NP_181494.1| glycosyl hydrolase family 17 protein [Arabidopsis thaliana]
 gi|2795803|gb|AAB97119.1| putative beta-1,3-glucanase [Arabidopsis thaliana]
 gi|20197108|gb|AAM14919.1| putative beta-1,3-glucanase [Arabidopsis thaliana]
 gi|330254607|gb|AEC09701.1| glycosyl hydrolase-17 [Arabidopsis thaliana]
          Length = 549

 Score = 41.6 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/261 (8%), Positives = 71/261 (27%), Gaps = 19/261 (7%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV--SDPT 75
              P +  +  +    +AV +   +  G    +      V  ++       V +  ++P 
Sbjct: 8   FILPFLLIVAGVIFQLSAVTSAIGINYGTLGNLQPPQQVVDFIKTKTTFDSVKIYDANPD 67

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI-----LIERDIAHLEMTLRRF 130
                  S              N+ ++  +G     +++      +  ++   +  ++  
Sbjct: 68  ILRAFAGSEI------------NITIMVPNGNIPAMVNVANARQWVAANVLPFQQQIKFK 115

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
                  +   +D  ++  +V  +Q    A++ S     +         S  +     + 
Sbjct: 116 YVCVGNEILASNDNNLISNLVPAMQSLNEALKASNLTYIKVTTPHAFTISYNRNTPSESR 175

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              DQ  +   I E  R              +    + ++A       +++         
Sbjct: 176 FTNDQKDIFTKILEFHRQAKSPFMINAYTFFTMDTNNVNYAIFGPSNAITDTNTQQTYTN 235

Query: 251 LDRFSFETVLHALERATAIRT 271
           +     +    A++       
Sbjct: 236 MFDAVMDATYSAMKALGYGDV 256


>gi|171318753|ref|ZP_02907894.1| type II secretory pathway component PulD-like protein [Burkholderia
           ambifaria MEX-5]
 gi|171096069|gb|EDT40997.1| type II secretory pathway component PulD-like protein [Burkholderia
           ambifaria MEX-5]
          Length = 534

 Score = 41.6 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 78/241 (32%), Gaps = 34/241 (14%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSF 230
            + A  +  K++   N     QV + V   ++  +   Q G    +      +     + 
Sbjct: 268 TKEAADNIGKLLKQENAISTRQVAITVRTIQIALNRGSQAGMNADVVFNAMHAGLARYAI 327

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAI---RTLAEPTLTAISGQS 284
           +        + GG   V  +     F     V++AL +        T+ + TL  +    
Sbjct: 328 SFTSPTSLATGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVSV 387

Query: 285 ASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           ASF S       T SS +   +           +TT D+    +  P V    +I L   
Sbjct: 388 ASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFV---NVLPAVNDHNQIVLAYW 444

Query: 334 TEVSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVLAGLLKDDIQQLK 382
            + S+      +    S + ++            D T+ L  G TIVL G + D      
Sbjct: 445 ADSSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTIVLYGAITDQADSTT 504

Query: 383 E 383
            
Sbjct: 505 N 505


>gi|115374949|ref|ZP_01462221.1| hypothetical protein STIAU_3535 [Stigmatella aurantiaca DW4/3-1]
 gi|310819208|ref|YP_003951566.1| hypothetical protein STAUR_1935 [Stigmatella aurantiaca DW4/3-1]
 gi|115368076|gb|EAU67039.1| hypothetical protein STIAU_3535 [Stigmatella aurantiaca DW4/3-1]
 gi|309392280|gb|ADO69739.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 249

 Score = 41.2 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 69  VLVSDPTKADVVVHS-PRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           V V DP+ A   V S    + L GK  G   ++L       + +L + 
Sbjct: 53  VEVEDPSIATAEVLSGSNELLLTGKRPGSTLLLLYAEGKFAVWSLSVA 100


>gi|293372373|ref|ZP_06618757.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f]
 gi|292632556|gb|EFF51150.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f]
          Length = 393

 Score = 41.2 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 6/211 (2%)

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            + V +P+ A   ++    + +     G A   +     K    +  + +R +      +
Sbjct: 140 SITVDNPSIAKAAINDKGQIQIESLAPGTATFTVKDRRDKTTELIVKVKKRMVVDNSENI 199

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
              +  +   ++++       G   T   S  A  L  +                +  N 
Sbjct: 200 PYLVIGTPATIKILDGN---GGYTCTAGGS--ATYLKCSMSEDGTEVIIEGLKRYRYNNK 254

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           + IA +D   ++VTI  +    L+   +++ + GS S  S S  +  G    S   + S 
Sbjct: 255 VTIADQDGEKIEVTITAIDDPYLENPSYRYMLAGSYSYQSLS-TSKVGEIMHSADFNLSQ 313

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLT 278
             V    +     +A++    +   ++   T
Sbjct: 314 LLVKSSTTSSASGYAVQFTGDLGVGSKTNAT 344


>gi|170029653|ref|XP_001842706.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167864025|gb|EDS27408.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 1364

 Score = 41.2 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129
           V+DP  A       RT  L G+ +G+ +V ++    G+ +   ++ +  D   L   L R
Sbjct: 617 VADPKIA---TLRGRT--LQGRAMGRTDVQVLSPITGRVIGAREVRVGSDKVSLTRLLVR 671

Query: 130 FIADSNIRVEMVS 142
            ++   + +   +
Sbjct: 672 VVSGLQLSITSDN 684


>gi|3341598|emb|CAA13143.1| z43r [Vibrio cholerae]
          Length = 166

 Score = 41.2 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
           ++V   L I+ +    QV L+  I EV      Q G   S   SS+G +    + 
Sbjct: 111 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSG 165


>gi|292492799|ref|YP_003528238.1| NolW domain protein [Nitrosococcus halophilus Nc4]
 gi|291581394|gb|ADE15851.1| NolW domain protein [Nitrosococcus halophilus Nc4]
          Length = 270

 Score = 41.2 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 39/148 (26%), Gaps = 23/148 (15%)

Query: 273 AEPTLTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
               +  + GQ+A   +G                     S+   D        P   +  
Sbjct: 136 DTQQVRILEGQAALLQTGQSIPLADRVWLLQGGRLLTQNSIRYRDVVSGFEVLPR-TNGN 194

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           R+ L I+         ++        ++   T V +P G    L G      QQ      
Sbjct: 195 RVTLEIRPYQ----ANLSGQGGGRIGMQTLVTQVSIPFGQWFELGGADGTRQQQ------ 244

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
                  +G ++       E   IFI  
Sbjct: 245 ------GIGTVYGTHSRTEELRHIFIRV 266


>gi|283788190|ref|YP_003368055.1| Type IV pilus biogenesis protein [Citrobacter rodentium ICC168]
 gi|30142048|gb|AAO17808.1| CfcD [Citrobacter rodentium]
 gi|282951644|emb|CBG91344.1| putative Type IV pilus biogenesis protein [Citrobacter rodentium
           ICC168]
          Length = 489

 Score = 40.8 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 78/251 (31%), Gaps = 29/251 (11%)

Query: 147 LHGMVRTIQDS---QRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNI 190
           L G   T  +S       ++++ ++S    N + +SS               + ++    
Sbjct: 197 LTGKTETKFESSFWDDVEDMAKNYISSGNYNIFKDSSVLMVNSRPSEYEALSQALDKYKA 256

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               Q  +   I  + ++ +K++     +       +    +       S  G  S    
Sbjct: 257 DNSRQFIVTYKIFTLDKNKVKELSAGLKLNFEDGHNTVKIGSSL---LDSLTGGISAGWK 313

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATS 306
                  + L AL + T  R++   +    +  +          Y +     +   G  +
Sbjct: 314 NSNVDINSGLDALYKLTGDRSIQSGSFITRNNMAIPLNMTKSQNYVSGKTRTTDDNGEVN 373

Query: 307 VTTHD----YGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           V         G     TP VLS GRI +         E +       +P+    +A  + 
Sbjct: 374 VEVETSSVVTGTSFIITPRVLSDGRIEVVSGFTKRYLEGIDTYEDVQLPNVSTTEAFNSS 433

Query: 361 ELPSGGTIVLA 371
            +  G  +++A
Sbjct: 434 IIMPGDLLMVA 444


>gi|311105342|ref|YP_003978195.1| lipoprotein 1 [Achromobacter xylosoxidans A8]
 gi|310760031|gb|ADP15480.1| lipoprotein 1 [Achromobacter xylosoxidans A8]
          Length = 528

 Score = 40.8 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 101/299 (33%), Gaps = 44/299 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G+V    +   ++ +++T  +     +Y    +K +   + +     V  ++T+     
Sbjct: 242 SGVVADAVEGATSIVVTDTPEALERVARYLERENKALTRRVRL-----VFEEITVV---A 293

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           +     G   ++  +++G +   A    G           +G       + ++ AL    
Sbjct: 294 NDATSGGIDWNVVYAAAGAAARLALPGAGAGGGSLDASMARGPFQGT--QAIVSALSTMG 351

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--------------GATSVTTHD-- 311
           A+    +  +  ++ +  +        Y     ST               A S++  +  
Sbjct: 352 AVVRHNKVPILTLNRRPVTHAVRTTFSYIDRVQSTAVPGTTAGGANGSLPAVSISQKEET 411

Query: 312 YGVVLHFTPTVLSPGRIGLRI--QTEVSEPVIGVNAGD--------MPSYRVRKADTTVE 361
            G  L   P +   G+I L +     V++P+  +  G+          +         VE
Sbjct: 412 VGSFLTLLPDIQEDGQILLSLAYDNAVAQPLKTITFGERGNQVQVQQVTIDGNGTVQQVE 471

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGI-PLLSKIPIL-GALFRNSRFNREETEIFIAATPFL 418
           L  G  I+++G  +   Q  ++ + P L   P++ G L      + E     +  T  +
Sbjct: 472 LRPGQPIIVSGFDRSQDQHDRQRLAPGL---PLIAGGL---DSASTERMTTLVLVTAQV 524


>gi|270016514|gb|EFA12960.1| hypothetical protein TcasGA2_TC001411 [Tribolium castaneum]
          Length = 724

 Score = 40.8 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129
           VSDP  A     S     L G+++G+  V ++    G+ +   +I +  D   L   L +
Sbjct: 163 VSDPRIA-----SLHGRILQGRSMGRTEVQVLSPITGRVIGAKEIRVGNDKVGLSRLLVQ 217

Query: 130 FIADSNIRVEM 140
            ++   + +  
Sbjct: 218 VVSGLQLNISP 228


>gi|189242331|ref|XP_969592.2| PREDICTED: similar to CG14446 CG14446-PA [Tribolium castaneum]
          Length = 728

 Score = 40.8 bits (94), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129
           VSDP  A     S     L G+++G+  V ++    G+ +   +I +  D   L   L +
Sbjct: 167 VSDPRIA-----SLHGRILQGRSMGRTEVQVLSPITGRVIGAKEIRVGNDKVGLSRLLVQ 221

Query: 130 FIADSNIRVEM 140
            ++   + +  
Sbjct: 222 VVSGLQLNISP 232


>gi|91089783|ref|XP_967761.1| PREDICTED: similar to CG14446 CG14446-PA, partial [Tribolium
           castaneum]
          Length = 1279

 Score = 40.8 bits (94), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129
           VSDP  A     S     L G+++G+  V ++    G+ +   +I +  D   L   L +
Sbjct: 623 VSDPRIA-----SLHGRILQGRSMGRTEVQVLSPITGRVIGAKEIRVGNDKVGLSRLLVQ 677

Query: 130 FIADSNIRVEM 140
            ++   + +  
Sbjct: 678 VVSGLQLNISP 688


>gi|157107854|ref|XP_001649969.1| hypothetical protein AaeL_AAEL004880 [Aedes aegypti]
 gi|108879490|gb|EAT43715.1| conserved hypothetical protein [Aedes aegypti]
          Length = 1315

 Score = 40.8 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129
           V+DP  A       RT  L G+ +G+ +V ++    G+ +   ++ +  D   +   L R
Sbjct: 629 VADPKIA---TLRGRT--LQGRAMGRTDVQVLSPITGRVIGAREVRVGSDKVSITRLLVR 683

Query: 130 FIADSNIRVEMVS 142
            ++   + +   +
Sbjct: 684 VVSGLQLSISSDN 696


>gi|297592828|gb|ADI47149.1| carbamoyl-phosphate synthase [Bohepilissus subtilis]
          Length = 299

 Score = 40.8 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 72/223 (32%), Gaps = 27/223 (12%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           ++ ++ + + +  +    ++ P K      GG  + + G+F   G          + AL+
Sbjct: 90  IKENLTRMLRYDPAYNIRNNLPRKVLIIGSGGLSIGQAGEFDYSG-------SQAIKALK 142

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                  L  P +  +  Q++   +   +    V         +    GV+L F      
Sbjct: 143 EENIKTVLINPNIATV--QTSKGLADKVYFLPLVPEYVEQVIKSERPGGVLLTFGGQTAL 200

Query: 325 PGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV--LAGLLKDDIQ 379
              + L+I     +    ++G     +     RK  +      G  +   LA     +  
Sbjct: 201 NCGVELQISGVFDKYGVKILGTPXQTIIDTEDRKVFSERIAAIGEKVAPSLAAFSVQEAL 260

Query: 380 QLKEGIPLLSKIPI-------LGALFRNSRFNREETEIFIAAT 415
              +    L   P+       LG L   S F   + E+ + AT
Sbjct: 261 DAADK---LGY-PVMVRAAFSLGGL--GSGFADNKEELKLLAT 297


>gi|110801614|ref|YP_698866.1| sugar ABC transporter [Clostridium perfringens SM101]
 gi|110682115|gb|ABG85485.1| ABC transporter, permease protein [Clostridium perfringens SM101]
          Length = 317

 Score = 40.4 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 14/88 (15%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L     +S   I + AG +  +  R         SG   ++ G +  D       +P
Sbjct: 90  SINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNIRIMQGFIPKD-------VP 137

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
           LLS IP++G LF +  +    T + I  
Sbjct: 138 LLSSIPVIGDLFFSKTYAT--TWLVILI 163


>gi|42562448|ref|NP_174452.2| copper amine oxidase, putative [Arabidopsis thaliana]
 gi|332193263|gb|AEE31384.1| putative copper amine oxidase [Arabidopsis thaliana]
          Length = 681

 Score = 40.4 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 72/209 (34%), Gaps = 27/209 (12%)

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
           PR  ++  ++ G+   I++    + +++  I +      L    +    +  ++ +   D
Sbjct: 87  PRQAFVIARDNGKTREIVLDFSSRAIVSDKIHVGNGYPMLSNDEQEASTELVVKFKPFID 146

Query: 144 TVVLHGMVRTI---------------QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
           +V   G+  +                 +++R + L   +L  +            ++  L
Sbjct: 147 SVAKRGLNVSEIVFTTSTIGWYGETKAEAERVIRLMPFYLDGTVNMYLRPIEGMTIIVNL 206

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV--SEGGDFS 246
           +         ++ ++E +   +  +   +      S  +  F        +   +G  F 
Sbjct: 207 D---------EMKVSEFKDRSVVTMPIANGTEYRISKLNPPFGPTLHNAVLLQPDGPGFK 257

Query: 247 VKG-VLDRFSFETVLHALERATAIRTLAE 274
           V G ++   ++E  +    RA  + +LA 
Sbjct: 258 VDGHIVRWANWEFHISFDVRAGIVISLAS 286


>gi|298371975|ref|ZP_06981965.1| cell surface protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274879|gb|EFI16430.1| cell surface protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 558

 Score = 40.4 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 3/105 (2%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-VQDVLVSD 73
            L      VA +    +    +++  +        + I +NK   + +  D        D
Sbjct: 8   ILMVCTFVVAFVATGCKKQTPIVDKGNGFKLSKNAVQIEVNKTAKVDIVGDGTYSAASGD 67

Query: 74  PTKADVVVHSPRTMYLFGK-NVGQANVILIGHDGKQMLNLDILIE 117
              AD  V   +T+ +  K  VG+  + +           +I + 
Sbjct: 68  ANIADAKVEG-KTVVISAKDKVGETVIKVFDAKNNSQKAQEIKVT 111


>gi|229816274|ref|ZP_04446583.1| hypothetical protein COLINT_03326 [Collinsella intestinalis DSM
            13280]
 gi|229808125|gb|EEP43918.1| hypothetical protein COLINT_03326 [Collinsella intestinalis DSM
            13280]
          Length = 2133

 Score = 40.4 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 70/192 (36%), Gaps = 27/192 (14%)

Query: 35   AVINISDVEIGKGKKISIGLNKVIILQ---VPVDVQ----DVLVSDPTKADVVVHSP--- 84
            A +    +E+G+ +  S+ +  +  ++   +P D +     V   +P  A VV  +    
Sbjct: 1575 AGVTADAIELGENQT-SLHVGDLAPVRAKVLPQDDRYPYFTVESGNPAVASVVSRTDAAG 1633

Query: 85   -RTMYLFGKNVGQANVIL---IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
             +T Y+ G++ G A + +   +         + +    D   LE  +   +         
Sbjct: 1634 KQTWYVRGESEGTAKITVKAAVDPSKTAEYEVTVKAGADTKPLEDAIAEAM-------MF 1686

Query: 141  VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
             +D         +     +AV+ +   L+ +       +++ KV   ++      V  K 
Sbjct: 1687 SADAY----TPESYAQLDQAVKEARALLNGNPSKSQILAAANKVEKAISALKMRPVDEKA 1742

Query: 201  TI-AEVRRDILK 211
             I  E  +D +K
Sbjct: 1743 LINTEKNKDAVK 1754


>gi|270013603|gb|EFA10051.1| hypothetical protein TcasGA2_TC012225 [Tribolium castaneum]
          Length = 1243

 Score = 40.4 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129
           VSDP  A     S     L G+++G+  V ++    G+ +   +I +  D   L   L +
Sbjct: 649 VSDPRIA-----SLHGRILQGRSMGRTEVQVLSPITGRVIGAKEIRVGNDKVGLSRLLVQ 703

Query: 130 FIADSNIRVEM 140
            ++   + +  
Sbjct: 704 VVSGLQLNISP 714


>gi|251788943|ref|YP_003003664.1| amino acid adenylation domain-containing protein [Dickeya zeae
            Ech1591]
 gi|247537564|gb|ACT06185.1| amino acid adenylation domain protein [Dickeya zeae Ech1591]
          Length = 2877

 Score = 40.4 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 22/99 (22%)

Query: 46   KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
            +G++I +G           +++ VL++ P  A  VV          + +G  +  L G D
Sbjct: 2443 RGQRIELG-----------EIEQVLLAQPGVAQAVVG--------ARELGGKSARLYGAD 2483

Query: 106  GKQMLNLDI---LIERDIAHLEMTLRRFIADSNIRVEMV 141
             +Q++   +       DIA L+  L + +    + V  V
Sbjct: 2484 ARQLVAWLVPQAETTLDIAALQQALSQQLPAHMVPVSYV 2522


>gi|256841350|ref|ZP_05546857.1| predicted protein [Parabacteroides sp. D13]
 gi|256737193|gb|EEU50520.1| predicted protein [Parabacteroides sp. D13]
          Length = 309

 Score = 40.4 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 13/124 (10%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGL--------N 55
           L++     M +   ++  S+A             +    +I  GKKI I          +
Sbjct: 40  LKKCMKIKMILIALTALLSLASCGDDDSGIQLTQDEIIGDINTGKKIVITSLTTYTESSS 99

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSP---RTMYLFGKNVGQANVILIGHDGKQMLNL 112
           KV +      +     SD + A V   +    + +Y+ G +VG   + +   DG     L
Sbjct: 100 KVNVNGAKGKISATS-SDESIAKVSCSTNEAEKEIYVSGVSVGNTTITITDSDGNT-AVL 157

Query: 113 DILI 116
            + +
Sbjct: 158 KVEV 161


>gi|262383579|ref|ZP_06076715.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294477|gb|EEY82409.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 327

 Score = 40.4 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 13/104 (12%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV----SDPTKADVVVH 82
           P         +N++   + +G+ + +     I    P D  D  V    SDP  ADV   
Sbjct: 162 PAPIPVTEVTLNLTSATLERGESLRL-----IATVSPADADDTSVRWSTSDPAIADV--- 213

Query: 83  SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
             +T  +   + G A +    +DG +  + ++ +      +E  
Sbjct: 214 -DQTGLVLALSAGNATITATTNDGGKTASCEVTVGELPNSIEAA 256


>gi|192359225|ref|YP_001980651.1| RHS Repeat family [Cellvibrio japonicus Ueda107]
 gi|190685390|gb|ACE83068.1| RHS Repeat family [Cellvibrio japonicus Ueda107]
          Length = 3749

 Score = 40.4 bits (93), Expect = 0.65,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 112/334 (33%), Gaps = 20/334 (5%)

Query: 68   DVLVSDPTKADVVVHSPRTMYL--FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
              LV +   A     + RT+ +       G A + +   DG+   +   ++  +  +   
Sbjct: 921  TALVPNGNIALGGSGANRTVNVTPIANVHGTATITVTVSDGQLTASRSFVVTVNPVNDAP 980

Query: 126  TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKV 184
            T+      +              G + T   +       S T L  +       SS+ + 
Sbjct: 981  TISAIANITIDEDASTGVRAFTIGDIDTPVANLIVSATSSNTTLVPNTNIVLGGSSTSRT 1040

Query: 185  MNLLNIA-GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            +N+  +A G    T+ VT+++ + +  +      ++   +  P+ S  A+      +  G
Sbjct: 1041 INITPVANGYGTATITVTVSDGQLNTSRSFVV--TVNSVNDAPTISTMANITIDEDTSTG 1098

Query: 244  DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT---AISGQSASFT---SGGQHLYKT 297
              +   + D  +  + L     ++    +    +    + + ++ + T   +G      T
Sbjct: 1099 ARAFT-ISDIDTSVSSLTVTATSSNTTLVPNTNIALGGSGANRTVNITPVANGYGTATIT 1157

Query: 298  VSSSTGATSVTTHDYGVV--LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SYRV 353
            V+ S G  S +      V  ++  PT+ +   I +   T        +   D P  +  +
Sbjct: 1158 VTVSDGQLSTSRSFVVTVSPINDAPTISTIANITIDEDTSTGVRAFTIGDIDTPIANLTI 1217

Query: 354  RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
              + +   L     IVL G       +     P+
Sbjct: 1218 SASSSNTALVPNTNIVLGG---SSTSRTINITPV 1248


>gi|326387091|ref|ZP_08208701.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM
            19370]
 gi|326208272|gb|EGD59079.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM
            19370]
          Length = 1172

 Score = 40.4 bits (93), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 15/86 (17%)

Query: 372  GLLKDDIQQLKEGIPL-LSKIPILGALFRNSRFNREETEIF------IAATPF---LVKP 421
            GL   +  +L   +P  L +IPILG  F     + ++ E+       +   PF    ++ 
Sbjct: 990  GLSGAETIRLIRRLPGRLGRIPILG--FTAYSNSDKQRELVEAGGGDVIVKPFTRATIRD 1047

Query: 422  VAMRDLSRP---DDHYSVEDDAKAFF 444
               R ++ P    D  +  ++ + F 
Sbjct: 1048 AIARAIATPSCGGDKAAGSEEFERFL 1073


>gi|154505040|ref|ZP_02041778.1| hypothetical protein RUMGNA_02550 [Ruminococcus gnavus ATCC 29149]
 gi|153794519|gb|EDN76939.1| hypothetical protein RUMGNA_02550 [Ruminococcus gnavus ATCC 29149]
          Length = 317

 Score = 40.4 bits (93), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 17/99 (17%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL--KEG 384
            I ++    +S   + + A     +  R              ++ G+ +           
Sbjct: 88  SINMKADQTISGTALNLFAPAFAIFTAR--------------MIQGMQQIQFTDTFHINK 133

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIA-ATPFLVKPV 422
           +P+L  IP++G LF  + +      I I     F++K  
Sbjct: 134 VPVLGDIPVIGDLFFQNCYISTYIGILIFAVAAFVIKNT 172


>gi|168700295|ref|ZP_02732572.1| hypothetical protein GobsU_12255 [Gemmata obscuriglobus UQM 2246]
          Length = 544

 Score = 40.0 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 62/198 (31%), Gaps = 37/198 (18%)

Query: 248 KGVLDRFSFETVLHALERA-TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---SSSTG 303
            GV        +L AL R    +  L  P +   SGQ     +  +    T        G
Sbjct: 335 SGVTLTARESLMLKALLRHHPMVEILFRPQVQLQSGQMGHVGAWQELPVVTGLEGEVRDG 394

Query: 304 ATSV----TTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNA----------G 346
            T           G  L   PTV + G++ +RI+   TE+  PV    +          G
Sbjct: 395 KTVYVAKSEPVSLGHKLRILPTVEADGQVTIRIEGAYTELERPVSSTTSLDRLAAPTPRG 454

Query: 347 DMP----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           D+P    S  +     T  +  G T V          +    +P      ++    +   
Sbjct: 455 DLPLELGSVNIHNFQATARVSDGQTAVF---------RSAAPVPTAG---VVVHPMKAPA 502

Query: 403 FNREETEIFIAATPFLVK 420
            +    E+    T  +V+
Sbjct: 503 KSEPMPELLWVLTSHVVR 520


>gi|297592826|gb|ADI47148.1| carbamoyl-phosphate synthase [Bohepilissus subtilis]
          Length = 299

 Score = 40.0 bits (92), Expect = 0.76,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 72/223 (32%), Gaps = 27/223 (12%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           ++ ++ + + +  +    ++ P K      GG  + + G+F   G          + AL+
Sbjct: 90  IKENLTRMLRYDPAYNIRNNLPRKVLIIGSGGLSIGQAGEFDYSG-------SQAIKALK 142

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                  L  P +  +  Q++   +   +    V         +    GV+L F      
Sbjct: 143 EENIKTVLINPNIATV--QTSKGLADKVYFLPLVPEYVEQVIKSERPGGVLLTFGGQTAL 200

Query: 325 PGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV--LAGLLKDDIQ 379
              + L+I     +    ++G     +     RK  +      G  +   LA     +  
Sbjct: 201 NCGVELQISGVFDKYGVKILGTPIQTIIDTEDRKVFSERIAAIGEKVAPSLAAFSVQEAL 260

Query: 380 QLKEGIPLLSKIPI-------LGALFRNSRFNREETEIFIAAT 415
              +    L   P+       LG L   S F   + E+ + AT
Sbjct: 261 DAADK---LGY-PVMVRAAFSLGGL--GSGFADNKEELKLLAT 297


>gi|315043786|ref|XP_003171269.1| hypothetical protein MGYG_07270 [Arthroderma gypseum CBS 118893]
 gi|311345058|gb|EFR04261.1| hypothetical protein MGYG_07270 [Arthroderma gypseum CBS 118893]
          Length = 1011

 Score = 40.0 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 86/260 (33%), Gaps = 19/260 (7%)

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
             T+   +  S I       T+ L G    I  +  A  ++ET+      +   ++   +
Sbjct: 335 TTTVTSTLPASTIT--QSGTTITLPGSTTVITSTIPASTITETYTEPGTVSTVTSTPPPE 392

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
                       +TL  +   V   +      Q   T +  G +    +      +++  
Sbjct: 393 ---------THVITLPASTITVTSTLPASTITQSGTTITLPGSTTVITSTIPASTITQ-- 441

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            ++  G +   +    L A    T   TL   T+T      ++ T  G     T +    
Sbjct: 442 TYTEPGTVSTETHVITLPA-STITMTSTLPASTITQSG---STITLPGSTTVITSTIPAS 497

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
             + T  + G V   T  +  PG     + T      I      +P+  + ++ TTV +P
Sbjct: 498 TITQTYTESGTVTTDTQVITLPGSTVTMVTTL--PGTITTVTQTLPATTITESGTTVTIP 555

Query: 364 SGGTIVLAGLLKDDIQQLKE 383
           +  T++ + L    I Q   
Sbjct: 556 ASTTVITSTLPASTITQTLT 575


>gi|166368218|ref|YP_001660491.1| hypothetical protein MAE_54770 [Microcystis aeruginosa NIES-843]
 gi|166090591|dbj|BAG05299.1| unknown protein [Microcystis aeruginosa NIES-843]
          Length = 710

 Score = 40.0 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 26/135 (19%)

Query: 313 GVVLHFTPTVLSPG-RIGLRIQ-----TEVSEPVIGVNAGD-----MPSYRVRKADTTVE 361
           GV +  TP+VL       L I      T+  EPV     G      +   +     T V 
Sbjct: 468 GVSMEITPSVLRNSASAELDINFTTGPTKDKEPVPDQFTGTTRLRPLSRIKQNTVSTRVY 527

Query: 362 LPSGGTIVLAGLLKDDIQQLKEG----IPLLSKI--------PILGALFRNSRFNREETE 409
           +    T+ +  L   + Q  ++G    IP++  I        PI+G LF      +    
Sbjct: 528 VN---TLDIFALSTFNSQTTEDGGRTYIPVIGTIWQGVFSGVPIIGQLFSWKNSPQSVQH 584

Query: 410 IFIAATPFLVKPVAM 424
             I  T   + P AM
Sbjct: 585 QSIVLTNSFIVPTAM 599


>gi|293371367|ref|ZP_06617804.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f]
 gi|292633727|gb|EFF52282.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f]
          Length = 281

 Score = 40.0 bits (92), Expect = 0.90,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 72/227 (31%), Gaps = 27/227 (11%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEA----NAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
            +   L  S P         +A        +            +SI     + ++  V  
Sbjct: 9   CLLFILLCSLPVFYSCSDEADAFYLYEYWEVMFDPEPPISETSLSITGGTKLGIKGGVAP 68

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
               ++D   A   V     + +    +G  ++++   DG+ +              ++ 
Sbjct: 69  YTAEIADGQIATAYVDENNDIQISSIKLGSTSLMVKDADGRII--------------KIG 114

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L+      +  V  V   +   G+  ++ D Q+  +L    + +  +++    ++  +  
Sbjct: 115 LKVVNGKQSFSVNSVEARI--TGIDESLLDEQQKEKL--EAVKKKIKDEAGIQATGGIAF 170

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
             +         KVTI    +D   +I    S + S SG +     +
Sbjct: 171 SYDQKSSG----KVTIVT-SKDNAPKIEGSFSRSTSESGTTFQITIN 212


>gi|325289184|ref|YP_004265365.1| S-layer domain-containing protein [Syntrophobotulus glycolicus DSM
            8271]
 gi|324964585|gb|ADY55364.1| S-layer domain-containing protein [Syntrophobotulus glycolicus DSM
            8271]
          Length = 1618

 Score = 40.0 bits (92), Expect = 0.91,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 33   NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV---VVHSPRTMYL 89
             +   N   V  G     ++ L + +         D+ V++ + A V    V +  T+ +
Sbjct: 987  PSVSANTLTVNKGATASFTVSLGQGV---SAATAADITVANGSIASVSTGRVTASGTVTV 1043

Query: 90   FGKNVGQANVIL-IGHDGKQMLNLDILIER 118
             G   G   +I+      + + N+ + +  
Sbjct: 1044 TGLAAGTTGIIVTFHDSAQTVKNIAVTVNA 1073


>gi|325271166|ref|ZP_08137720.1| type II and III secretion system protein [Pseudomonas sp. TJI-51]
 gi|324103699|gb|EGC00992.1| type II and III secretion system protein [Pseudomonas sp. TJI-51]
          Length = 53

 Score = 40.0 bits (92), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           ++     I+L GL ++       G+  L K      LFR++      +EI +  
Sbjct: 1   QMRDREVILLGGLTEEKTSDNSTGLSFLPK------LFRSNTSEASNSEILLVI 48


>gi|159039589|ref|YP_001538842.1| transport-associated [Salinispora arenicola CNS-205]
 gi|157918424|gb|ABV99851.1| transport-associated [Salinispora arenicola CNS-205]
          Length = 213

 Score = 40.0 bits (92), Expect = 0.92,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 28/151 (18%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD--VLVSDPTK----------- 76
             A+   +     E    ++I I +++ +     V  +   V V++              
Sbjct: 58  AVADELEVRPPGDERYTDREIGIAVSRALEWDSFVPAERLDVTVANGWVILRGDVEFGWQ 117

Query: 77  ---ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
              A+  V   R +       G  N++     G          ER    ++  L R +  
Sbjct: 118 RRTAEAEVRRLRGV------RGVTNLVAARPAGAADG------ERIRREVQRALSRGLGT 165

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
             + V++   TVVL+G+VR+  +  +A   +
Sbjct: 166 ERVTVDVDGSTVVLNGVVRSWWERDQAERTA 196


>gi|237724111|ref|ZP_04554592.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229437571|gb|EEO47648.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 281

 Score = 40.0 bits (92), Expect = 0.95,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 18/121 (14%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           ++ F  +   FL ++ P+          N     I D      K++ + L    I +V  
Sbjct: 11  KKLFGLLWMFFLVATLPAC--------HNDDDGKIIDTPEFSAKELEVPLGGTGITEVLA 62

Query: 65  DVQDVL-VSDPTKADVVVHSPRT-------MYLFGKNVGQANVILIGH--DGKQMLNLDI 114
           + + +L V+DP  A   + S          +Y+ G   G+  + L     + K +L + +
Sbjct: 63  NDEVILEVTDPDIATAALISETNAYTPKRYVYVAGVKKGETTLQLTDKLTEKKIILPITV 122

Query: 115 L 115
            
Sbjct: 123 T 123


>gi|289449367|ref|YP_003474976.1| branched-chain amino acid ABC transporter permease [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289183914|gb|ADC90339.1| branched-chain amino acid ABC transporter, permease protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 317

 Score = 39.6 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I ++    +S   + + A     +  R+ +T  ++P   T  +            + IP
Sbjct: 88  SINMKADQTISGTALNMFAPAFVIFIAREINTIQQIPFEDTFHI------------DRIP 135

Query: 387 LLSKIPILGALF 398
            L+ IP+LG +F
Sbjct: 136 FLADIPVLGPMF 147


>gi|226311362|ref|YP_002771256.1| extracellular serine protease precursor [Brevibacillus brevis NBRC
            100599]
 gi|226094310|dbj|BAH42752.1| putative extracellular serine protease precursor [Brevibacillus
            brevis NBRC 100599]
          Length = 3487

 Score = 39.6 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 38/306 (12%), Positives = 88/306 (28%), Gaps = 55/306 (17%)

Query: 72   SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
            S+P+ A V         + G   G A + +          + +         +    + I
Sbjct: 2633 SNPSVAQVSSQG----VVTGIKAGTATITVSYDGKNASSQITV---------QGATIQEI 2679

Query: 132  ADSNIRVEMVSD---TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
              + ++V +V+     + +        +      +S+  +  S     A+  S  ++  L
Sbjct: 2680 KGTPVQVSLVAGGTQQLSVTATYSNGAEEN----ISKQAVYSSSNANVASVDSGGLITAL 2735

Query: 189  NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            +  G  QVT+                      G  S       +      VS     +  
Sbjct: 2736 S-PGATQVTVS--------------------YGGQSTIIPVTVSGNAISLVSLAVTPATV 2774

Query: 249  GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
             +    + +  + A     +   +     T  S Q A  + G       +++ +   +V+
Sbjct: 2775 SIGKGANQQLEVKATYSDNSQTIVTNQ-ATYQSSQPAIASVGASGFVTGMAAGSATVTVS 2833

Query: 309  T--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
                   V +  T             Q  V    +   + +M   + ++   T     G 
Sbjct: 2834 FGGKTVTVPVQVT-----------ETQEPVQSLSVTPVSLNMLVGKTQQLQVTATYKDGK 2882

Query: 367  TIVLAG 372
             + ++G
Sbjct: 2883 NMDVSG 2888


>gi|325107283|ref|YP_004268351.1| peptidase M56 BlaR1 [Planctomyces brasiliensis DSM 5305]
 gi|324967551|gb|ADY58329.1| peptidase M56 BlaR1 [Planctomyces brasiliensis DSM 5305]
          Length = 789

 Score = 39.6 bits (91), Expect = 0.99,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 87/280 (31%), Gaps = 38/280 (13%)

Query: 129 RFIADSNIRVEMVSDTVVLHG-MVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182
           R ++     +        L G    T  +    +  ++        +   N   +     
Sbjct: 481 RALSKKQAVISSADSGDALRGRTTGTEPEISEDLPTAQVHWDGERWSVIVNGPPEIHRQL 540

Query: 183 -KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGK 237
            + +   N +G  QV ++  I   + D+++  G       S    SS P+K+        
Sbjct: 541 SETVRAFNRSGYGQVAVETRIYMSQHDVMEAAGLSWDRIQSGRSESSLPAKNSEDRIDEI 600

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE------------PTLTAISGQSA 285
             S      +  V  ++    ++  L+    +R +              P LT  +GQS 
Sbjct: 601 TNSLNESNVLSNVSRQYHSPVMIAVLDNDQLLRFIKSAFIYVKPENMFAPKLTLRNGQSG 660

Query: 286 SFTSGGQHLYKT-VSSSTGAT---SVTTHDYGVVLHFTPTVLSPGR-------IGL---- 330
               G Q  +   V+   G      V   + G  +     +            + +    
Sbjct: 661 RLYDGVQRPFVVGVNQQEGGNLKPDVRIIEEGTSVKMRLDLTEDHTAVDLVAAVEMSKIS 720

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            +QT  ++         +P+      +T+ +L  G T++L
Sbjct: 721 DVQTFTTQARGQRVTVQVPNVDKIHVETSSQLTDGETLLL 760


>gi|110799128|ref|YP_696263.1| ABC transporter, permease protein [Clostridium perfringens ATCC
           13124]
 gi|168206804|ref|ZP_02632809.1| ABC transporter, permease protein [Clostridium perfringens E str.
           JGS1987]
 gi|168209351|ref|ZP_02634976.1| ABC transporter, permease protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|168213546|ref|ZP_02639171.1| ABC transporter, permease protein [Clostridium perfringens CPE str.
           F4969]
 gi|168217678|ref|ZP_02643303.1| ABC transporter, permease protein [Clostridium perfringens NCTC
           8239]
 gi|169342761|ref|ZP_02863797.1| ABC transporter, permease protein [Clostridium perfringens C str.
           JGS1495]
 gi|182626038|ref|ZP_02953800.1| ABC transporter, permease protein [Clostridium perfringens D str.
           JGS1721]
 gi|110673775|gb|ABG82762.1| ABC transporter, permease protein [Clostridium perfringens ATCC
           13124]
 gi|169299018|gb|EDS81090.1| ABC transporter, permease protein [Clostridium perfringens C str.
           JGS1495]
 gi|170661774|gb|EDT14457.1| ABC transporter, permease protein [Clostridium perfringens E str.
           JGS1987]
 gi|170712523|gb|EDT24705.1| ABC transporter, permease protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714913|gb|EDT27095.1| ABC transporter, permease protein [Clostridium perfringens CPE str.
           F4969]
 gi|177908650|gb|EDT71166.1| ABC transporter, permease protein [Clostridium perfringens D str.
           JGS1721]
 gi|182380276|gb|EDT77755.1| ABC transporter, permease protein [Clostridium perfringens NCTC
           8239]
          Length = 317

 Score = 39.6 bits (91), Expect = 0.99,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 14/88 (15%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L     +S   I + AG +  +  R         SG   ++ G +  D       +P
Sbjct: 90  SINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNIRIMQGFIPKD-------VP 137

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
           +LS IPI+G LF +  +    T + I  
Sbjct: 138 VLSSIPIIGDLFFSKTYAT--TWLVILI 163


>gi|198459322|ref|XP_001361339.2| GA20669 [Drosophila pseudoobscura pseudoobscura]
 gi|198136652|gb|EAL25917.2| GA20669 [Drosophila pseudoobscura pseudoobscura]
          Length = 1857

 Score = 39.6 bits (91), Expect = 1.00,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 118/308 (38%), Gaps = 41/308 (13%)

Query: 21   PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV-------SD 73
            PS   +  +   + +V+++  VE     +  + L      ++ VD Q++ V        +
Sbjct: 959  PSHLSISVVGIGSISVVSMDRVERANSIEAIVQLFDTNDNELHVDPQNLAVYDLSEVVFN 1018

Query: 74   PTKADVVV-----HSPRTMY--LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            P   +V +       P  +   + GKN+G+  ++     G Q ++ + ++ +  A + + 
Sbjct: 1019 PNILNVRLDMQHNLRPGQIRYSITGKNIGETKIVFQSGKGSQQVSSEPIVVQVFAPIRLY 1078

Query: 127  LRR--FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
             R    +  S+I++           ++ T++  Q A   S      +     A++ + K 
Sbjct: 1079 PRDSTLLVGSSIQIYSQGGPQPNTNLIYTVEKEQVATMSSAIV---TAHRLGASNITGKC 1135

Query: 185  MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
            +    + G+D+V  + TI EVR   LK +  +  +    SG      A   G+      D
Sbjct: 1136 LMKNPVTGKDEVVSQDTI-EVRVAALKGVEIRTPLVRIRSGAV--MPATLWGQP-----D 1187

Query: 245  FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASF--TSGGQHLYKTVSS 300
            FS            VL  LE      T+++P +  I      A     SG     +  + 
Sbjct: 1188 FS----------PMVLGTLEDMQITWTVSQPGIVEIFNVLTEAGIEYQSGDLISVRVRAL 1237

Query: 301  STGATSVT 308
            + G  ++T
Sbjct: 1238 NPGKVTIT 1245


>gi|326430749|gb|EGD76319.1| carbamylphosphate synthetase 1 [Salpingoeca sp. ATCC 50818]
          Length = 1560

 Score = 39.6 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 12/143 (8%)

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                GG  + + G+F   G          + AL+       L  P +  +  Q+A   +
Sbjct: 447 LILGSGGLQIGQAGEFDYSG-------SQAIKALKEKGIKSVLVNPNIATV--QTAEGLA 497

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR---IQTEVSEPVIGVNAG 346
              +L                  G+ L F         + L    +  +    V+G +  
Sbjct: 498 DQVYLMPIEPEFVQEIIAKERPDGIFLQFGGQTALNCGVELDRNGVLAQYGVRVLGTSVN 557

Query: 347 DMPSYRVRKADTTVELPSGGTIV 369
            + +   R+      L  G +I 
Sbjct: 558 SIIATEDREIFAQKLLDIGESIA 580


>gi|172064588|ref|YP_001812238.1| type II secretory pathway component PulD-like protein [Burkholderia
           ambifaria MC40-6]
 gi|171998073|gb|ACB68989.1| type II secretory pathway component PulD-like protein [Burkholderia
           ambifaria MC40-6]
          Length = 536

 Score = 39.6 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 90/277 (32%), Gaps = 44/277 (15%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-FAA 232
            + A  +  K++   N     QV + V   ++      + G    +  ++     + +A 
Sbjct: 270 TKEAADNIGKLLQHENAISTRQVAVTVRTIQISLSKGSEAGANADVVFNAMHAGLARYAI 329

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAI---RTLAEPTLTAISGQS 284
            F        G  SV   + R           ++AL +        T+ + TL  +    
Sbjct: 330 SFASPTSLATGGGSVGVSVLRPDAPFSGTNAAINALNKYGRTVQDNTMTKMTLNGLPVSV 389

Query: 285 ASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           ASF S       + S+ T   +           +TT D+    +  P V    +I L   
Sbjct: 390 ASFQSDDYLRSTSPSAGTLNATSGGVPGLTPGTITTGDFV---NVLPAVNDHNQIVLAYW 446

Query: 334 TEVSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVLAGLLKDDIQQLK 382
            + S+      +  + S + ++            D T+ L  G T+VL G + D      
Sbjct: 447 ADSSKLNGPFTSAGVGSGQTQQQIQLAHTIGTKDDQTIALSDGQTVVLYGAMTDHADSTT 506

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                      +G L     +N+ +T   I     +V
Sbjct: 507 NA--------GIGGL--TGSWNKSKTFQIIMLKATVV 533


>gi|332878081|ref|ZP_08445811.1| carbohydrate binding module [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332684043|gb|EGJ56910.1| carbohydrate binding module [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 441

 Score = 39.6 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
           DP  ADV VH      +  K+ G   +++   D K+ + +D+      A    +++    
Sbjct: 52  DPEIADVDVHG----MVTAKSKGNTRIVVSSGDNKEYVEVDVE-----APASKSVQAHAG 102

Query: 133 DSNIRVEMVSDT-VVLHGMVRTIQDS 157
              ++ E+V D   V    V  + D 
Sbjct: 103 KGRVQFEVVIDNEYVQTVKVECVTDH 128


>gi|332878783|ref|ZP_08446498.1| bacterial group 2 Ig-like protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683134|gb|EGJ56016.1| bacterial group 2 Ig-like protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1012

 Score = 39.6 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 31/77 (40%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
              +  G N  + +        +  S+   A   +    T+ +FGK  G A +++  ++ 
Sbjct: 654 AVTLKKGENVQVNITSGTGSYTLATSNAYIATASLVKMNTITVFGKGKGTAVIVVTDNES 713

Query: 107 KQMLNLDILIERDIAHL 123
            +  ++ + ++   + +
Sbjct: 714 GEKKSITVNVQASASDI 730


>gi|288559335|ref|YP_003422821.1| adhesin-like protein [Methanobrevibacter ruminantium M1]
 gi|288542045|gb|ADC45929.1| adhesin-like protein [Methanobrevibacter ruminantium M1]
          Length = 3053

 Score = 39.6 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 94/311 (30%), Gaps = 22/311 (7%)

Query: 68   DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            +V+V + T  + V  SP       K+     V L  +DGK + N D+ +   +   + T 
Sbjct: 2533 EVVVYNNTVTETVYLSPNATISLSKSGNDVLVSLTDNDGKAIANADLDVL--VNGAKSTA 2590

Query: 128  RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
            +             + TVV+        ++                    N++  + +N 
Sbjct: 2591 KTNAKGEATIAINGNATVVVS---YKDANNITVTSSITVVNETETVVIEKNNTIIEYVNQ 2647

Query: 188  LNIAGEDQVTLKV----TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--KFVSE 241
              +     V+L +     +AEV       +  +      +  P      D  G      E
Sbjct: 2648 -TVPPNATVSLSLVDGKVVAEVTDGDGVPLANKLLAVTVNGAPKLGAETDANGIYSIPVE 2706

Query: 242  GGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
            G    V    D    +  + +  L  +  +      T+     Q+          +  V 
Sbjct: 2707 GNATVVVSCTDNNGVTVSSSITVLNNSETVVVEKNNTIVEYVNQTVYVPVVSNSSFDIVG 2766

Query: 300  SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADT 358
               G +++   + G      P  +S   + L +    S      N    +P+ +      
Sbjct: 2767 DENGISAILLDEDG-----KP--ISGAVVELDVNGAKSNITSDKNGEIVIPTDKNGTITM 2819

Query: 359  TVELPSGGTIV 369
            T    +G  ++
Sbjct: 2820 TYTDENGAKLI 2830


>gi|260587136|ref|ZP_05853049.1| ABC transporter, permease protein [Blautia hansenii DSM 20583]
 gi|331082915|ref|ZP_08332036.1| hypothetical protein HMPREF0992_00960 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542507|gb|EEX23076.1| ABC transporter, permease protein [Blautia hansenii DSM 20583]
 gi|330400056|gb|EGG79709.1| hypothetical protein HMPREF0992_00960 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 317

 Score = 39.6 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++       + +P+L  IP++G LF  + +      I I      V
Sbjct: 123 IQFTDTFQIDKVPVLGDIPVIGPLFFQNCYITTYIGILIFLVAAFV 168


>gi|32475179|ref|NP_868173.1| signal peptide [Rhodopirellula baltica SH 1]
 gi|32445720|emb|CAD78451.1| hypothetical protein-signal peptide and transmembrane prediction
           [Rhodopirellula baltica SH 1]
          Length = 215

 Score = 39.6 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 4/103 (3%)

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           +SA      +    + S    +T +    + + L   P     G     + + +     G
Sbjct: 82  ESARLMVQHELSVTSGSRVNQSTKMDDTTFKLNLEVQP--ADQGSYTFHVTSSLETLAPG 139

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            +     +   RK D+  +L  G + VL GL +   ++    +
Sbjct: 140 KDIARRTAI--RKVDSAFKLSPGTSFVLTGLERSGRERAITQV 180


>gi|160880176|ref|YP_001559144.1| inner-membrane translocator [Clostridium phytofermentans ISDg]
 gi|160428842|gb|ABX42405.1| inner-membrane translocator [Clostridium phytofermentans ISDg]
          Length = 319

 Score = 39.3 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I  +    +S  VI + A  + ++  ++ +  +        VL   + + +      IP+
Sbjct: 88  IRFKANQVISGVVINILALSLTTFLTKQINRGLFNAPSDKFVLG--VSNKLT-----IPV 140

Query: 388 LSKIPILGALFRN 400
           LS+IP++GA+F+N
Sbjct: 141 LSEIPVIGAIFKN 153


>gi|223985201|ref|ZP_03635286.1| hypothetical protein HOLDEFILI_02592 [Holdemania filiformis DSM
            12042]
 gi|223962818|gb|EEF67245.1| hypothetical protein HOLDEFILI_02592 [Holdemania filiformis DSM
            12042]
          Length = 1122

 Score = 39.3 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 19/141 (13%)

Query: 54   LNKVIILQVPVDVQDVLV---SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD----- 105
            +N+   L +  +V+D ++   +DP+  D        + + GK  G   +  + +      
Sbjct: 984  VNEPTKLHLDRNVEDQIIWNIADPSILD---LDEENLEITGKKPGITKLTAMMNGISSTL 1040

Query: 106  GKQMLNLDILIERDIA--HLEMTLRRFIADSNIRV------EMVSDTVVLHGMVRTIQDS 157
               + ++D+  +  I     +        +  IRV      E V+D V L      +   
Sbjct: 1041 SVTVYSIDVNSKLSIRVEDYQSAGLEIGEERQIRVVGSIGQEEVNDRVTLTSSNPKVAVI 1100

Query: 158  QRAVELSETFLSQSGRNQYAN 178
              A +L    L  +       
Sbjct: 1101 DEAGKLKAIGLGTTTITAAVK 1121


>gi|330814465|ref|YP_004362640.1| type II secretory pathway component PulD-like protein [Burkholderia
           gladioli BSR3]
 gi|327374457|gb|AEA65808.1| type II secretory pathway component PulD-like protein [Burkholderia
           gladioli BSR3]
          Length = 531

 Score = 39.3 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 77/241 (31%), Gaps = 34/241 (14%)

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ------IGFQHSITGSSSGPS 227
            + A  +  K++N  N     QV + V   ++  +   Q      + F     G +    
Sbjct: 265 TKEAADNIGKLLNHENAISTRQVAITVRTLQIALNKGSQAGANADVVFNAMHAGLARYAV 324

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS--- 284
              +           G   ++          V++AL +          T   ++G     
Sbjct: 325 SFTSPTSLASGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVAI 384

Query: 285 ASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRI- 332
           ASF S       T SS +   +           +TT D+    +  P V    +I L   
Sbjct: 385 ASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFV---NVLPAVNDHNQIVLAYW 441

Query: 333 --QTEVSEPVIGVNAGDMPSYRVRKA--------DTTVELPSGGTIVLAGLLKDDIQQLK 382
              ++++ P   V AG   + +  +         D T+ L  G TIVL G + D      
Sbjct: 442 ADSSKLNGPFTSVGAGSGQTQQQIQLAHTVGSKDDQTIALSDGQTIVLYGAITDQADSTT 501

Query: 383 E 383
            
Sbjct: 502 N 502


>gi|260949951|ref|XP_002619272.1| hypothetical protein CLUG_00431 [Clavispora lusitaniae ATCC 42720]
 gi|238846844|gb|EEQ36308.1| hypothetical protein CLUG_00431 [Clavispora lusitaniae ATCC 42720]
          Length = 1132

 Score = 39.3 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 15/123 (12%)

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           ++   G++   SK      GG  + + G+F   G          + AL+ A     L  P
Sbjct: 41  KNGAQGATVDVSKVLVIGSGGLSIGQAGEFDYSG-------SQAIKALKEANKTSILVNP 93

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +     Q++   +   +                   G++L F       G+ GL +  +
Sbjct: 94  NIAT--NQTSHALADEIYYLPVTPEYVTYIIERERPDGILLTF------GGQTGLNVGVQ 145

Query: 336 VSE 338
           + +
Sbjct: 146 LDK 148


>gi|332025599|gb|EGI65761.1| Transmembrane protein 132C [Acromyrmex echinatior]
          Length = 1505

 Score = 39.3 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVL-VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH- 104
             ++S  +N+   L+V   V  +L VSDP  A   +   R   + G+ VG+  V ++   
Sbjct: 761 SGRVSYFVNRRTWLRVTDLVAGMLRVSDPRIA--TLLQGR--LVQGRGVGRTEVQVLSPI 816

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            G+ +   +I +  D   +     R ++   + +    DT + +G V     ++R
Sbjct: 817 TGRVIGAKEIRVGNDRVSVTRLSVRVVSGLQLSISP--DTAIENGYVAETSVTRR 869


>gi|242280968|ref|YP_002993097.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
           [Desulfovibrio salexigens DSM 2638]
 gi|242123862|gb|ACS81558.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
           [Desulfovibrio salexigens DSM 2638]
          Length = 770

 Score = 39.3 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 95/323 (29%), Gaps = 45/323 (13%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV-LHGM 150
           KN+  +       DG+ + ++ I    D+  +    +R I ++NI +   + +   +   
Sbjct: 445 KNIMVSTTPFYDMDGQMLGSVAIWF--DMTEIRTQ-QRMIEENNIMISEAAASATEVSNQ 501

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           V +  ++  A    E     +       S +   M+ +N           T+ EV R+  
Sbjct: 502 VSSFAEALAAQ--VEQSSRGAEEQSVMASEAATAMDEMN----------STVLEVARNAS 549

Query: 211 KQIGFQH-----------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
                                   S        S+    D         G  ++ GV+  
Sbjct: 550 SAADLALESQKKAGEGERMVANAVSTITKVRAQSEQLQEDMSDLGKQAEGIGNIMGVISD 609

Query: 254 FSFETVLHALERA-----------TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            + +T L AL  A                  E    A    +A+   G        S+  
Sbjct: 610 IADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTMTATLEVGDYISNIQASARK 669

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
              +        ++  T  +   G +   I  +VSE    V +    S     A   +  
Sbjct: 670 NIENTE-KSTEAIMDVTDLINQSGEVLKDIVDKVSETNDQVRSIATASEEQSAASEQISR 728

Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385
            +G    +AG     + +  E +
Sbjct: 729 STGEINSIAGETAQAMNESAEAV 751


>gi|116333124|ref|YP_794651.1| alpha-xylosidase YicI [Lactobacillus brevis ATCC 367]
 gi|116098471|gb|ABJ63620.1| Alpha-glucosidase, family 31 of glycosyl hydrolase [Lactobacillus
           brevis ATCC 367]
          Length = 762

 Score = 39.3 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 8/102 (7%)

Query: 60  LQVPVDVQ--DVLVSDPTK--ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           L +PV  +   +L+ +P    AD        ++L+  + G  +V ++   GK      + 
Sbjct: 662 LDLPVLARENTILLRNPKAVHADYDFTKDLDIHLYDMHEGTTSVAVVDQKGKDAGK--VT 719

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDT--VVLHGMVRTIQ 155
           ++R    L++T      ++ I +     T  V L+G   TI+
Sbjct: 720 VDRTGNELKVTTTGLNGNATIYIHENGKTTQVTLNGAATTIK 761


>gi|162455131|ref|YP_001617498.1| hypothetical protein sce6849 [Sorangium cellulosum 'So ce 56']
 gi|161165713|emb|CAN97018.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 1349

 Score = 38.9 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 41/134 (30%), Gaps = 26/134 (19%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G   V G     +F   +   +    I T A P  TA  G +A+  + G+ L      + 
Sbjct: 340 GRVLVTGGWSDGTFLASVELFDPREGIWTTARPMSTARYGHTATLLTDGRVLVAGGIGAA 399

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           G                PTV            E+ +P             VR+  T   L
Sbjct: 400 GEV--------------PTV------------ELFDPATNTWTPARSMSTVRRGHTATLL 433

Query: 363 PSGGTIVLAGLLKD 376
             G  +V  GL  D
Sbjct: 434 DDGQVLVTGGLTSD 447


>gi|212550854|ref|YP_002309171.1| carbamoyl-phosphate synthase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549092|dbj|BAG83760.1| carbamoyl-phosphate synthase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 1449

 Score = 38.9 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 57/186 (30%), Gaps = 20/186 (10%)

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                G   + E G+F   G          L AL+       L  P +  +  Q++   +
Sbjct: 386 LLLGSGALKIGEAGEFDYSG-------SQALKALKEEGIYTVLINPNIATV--QTSEGVA 436

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR---IQTEVSEPVIGVNAG 346
              +                   G++L F         + L    I  + +  V+G    
Sbjct: 437 DKIYFLPVTPFFVEKVIEKEKPEGILLSFGGQTALNCGVFLHQSGIFEKYNVNVLGTTVQ 496

Query: 347 DMPSYRVRKAD----TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK----IPILGALF 398
            +     R+        + + S  +I +  +        + G P++ +    +  LG+ F
Sbjct: 497 SIIDTEDRELFVKKLNQINVKSIKSIAVGTIKDARRAAEELGYPIIVRAAYALGGLGSGF 556

Query: 399 RNSRFN 404
            N++  
Sbjct: 557 CNNQEQ 562


>gi|294776074|ref|ZP_06741570.1| TonB-dependent receptor plug domain protein [Bacteroides vulgatus
           PC510]
 gi|294450212|gb|EFG18716.1| TonB-dependent receptor plug domain protein [Bacteroides vulgatus
           PC510]
          Length = 1051

 Score = 38.9 bits (89), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 67/226 (29%), Gaps = 38/226 (16%)

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
            V++P  ADV +             G    +++   G+ ++   ++++         L  
Sbjct: 24  AVANPGVADVKITQQN---------GACTGVVVDATGETVIGASVVVKGTTNGTITGLDG 74

Query: 130 FI------ADSNIRVEMVSDTVV---LHGM---VRTIQDSQRAVELSETFLSQSGRNQYA 177
                       I++  V    V     G    V    D+Q   E+  T L      +  
Sbjct: 75  DFSLSNVKKGDIIQISFVGYQTVEIPWDGQPMNVTLQDDTQTLGEVVVTALGIKREKKAL 134

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGG 236
             + ++V        +    L+    E+              I  SS+GP  S      G
Sbjct: 135 GYAMQEV--------KGDALLEAR--EMNLANALTGKVSGVQIIRSSNGPGGSSKIQLRG 184

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                G +  +  V+D    +    A         +  PTL   +G
Sbjct: 185 ANSVTGLNQPLI-VVDGVPMDNFTGASNND-----IDNPTLDMGNG 224


>gi|325192220|emb|CCA26674.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 1517

 Score = 38.9 bits (89), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 24/148 (16%)

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
             GG  + + G+F   G          + AL        L  P +  +  Q++   +   
Sbjct: 431 GSGGLSIGQAGEFDYSG-------SQAIKALREEGVHVILVNPNIATV--QTSKGLADKV 481

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE---------VSEPVIGV 343
           +     +S+           G++      V   G+  L +  E          +  V+G 
Sbjct: 482 YFVPVRASTVLEVIKKEKPDGIL------VSMGGQTALNVGIELYQNGDLDRHNVIVMGT 535

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLA 371
               + +   R+  +      G TI L+
Sbjct: 536 QIPAIINTEDREKFSEKLAEIGETIALS 563


>gi|254427758|ref|ZP_05041465.1| hypothetical protein ADG881_988 [Alcanivorax sp. DG881]
 gi|196193927|gb|EDX88886.1| hypothetical protein ADG881_988 [Alcanivorax sp. DG881]
          Length = 254

 Score = 38.9 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +  +SG  A+ + G       +S     T+    D G+    TP +   G + L+I   
Sbjct: 136 QIRTLSGYPANVSQGTLV---ALSGGYYGTTFAQLDQGI--QVTPQLTPDGSVVLQISQR 190

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             +P     A      R + + TT+ +  G    +  +        + 
Sbjct: 191 FDQPASHNTA------RTQHSATTLRVTPGRWQPMGSITVTQSGSRQS 232


>gi|189424519|ref|YP_001951696.1| hypothetical protein Glov_1457 [Geobacter lovleyi SZ]
 gi|189420778|gb|ACD95176.1| hypothetical protein Glov_1457 [Geobacter lovleyi SZ]
          Length = 940

 Score = 38.9 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 23/173 (13%)

Query: 188 LNIAGEDQVTLKVTIAE-VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------VS 240
           L +    Q  +K  IAE V R           +T S +GP  S +   GG        + 
Sbjct: 271 LMVIKPQQTAVKGEIAEFVVRGDFLNGFTSTGLTFSVTGPGGSASPFPGGTVQLTPASLK 330

Query: 241 EGGDFSVKGVLDRFSFETVLHA-LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             G FS++      +      A +   T   T++ P    I+G  AS        + T  
Sbjct: 331 NSGGFSIRISTSGLTIGQTYSAEVRTTTTSGTVSAPFSLTITGV-ASIK------FYTTD 383

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
             TGA +  T          PTV   G + + I+ + S   I     ++ S  
Sbjct: 384 PGTGAKTYHTT--------LPTVTKQGTVSVGIEAQDSTGQILTTPINISSSN 428


>gi|160892053|ref|ZP_02073056.1| hypothetical protein BACUNI_04513 [Bacteroides uniformis ATCC 8492]
 gi|156858531|gb|EDO51962.1| hypothetical protein BACUNI_04513 [Bacteroides uniformis ATCC 8492]
          Length = 681

 Score = 38.9 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            D T ADV  +    + LF K  GQ N++     G+ +  ++ +    +  ++  
Sbjct: 384 GDQTIADVRTNRDSRLSLFLKEPGQTNIVWDDQPGQSLNLIEPVPNIIVGDMQRA 438


>gi|150004697|ref|YP_001299441.1| hypothetical protein BVU_2158 [Bacteroides vulgatus ATCC 8482]
 gi|149933121|gb|ABR39819.1| putative outer membrane protein, probably involved in nutrient
           binding [Bacteroides vulgatus ATCC 8482]
          Length = 681

 Score = 38.9 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            D T ADV  +    + LF K  GQ N++     G+ +  ++ +    +  ++  
Sbjct: 384 GDQTIADVRTNRDSRLSLFLKEPGQTNIVWDDQPGQSLNLIEPVPNIIVGDMQRA 438


>gi|255008103|ref|ZP_05280229.1| hypothetical protein Bfra3_03120 [Bacteroides fragilis 3_1_12]
          Length = 360

 Score = 38.5 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRT----MYLFGKNVGQANVILIG 103
           KI +G ++ + L    +   + ++D   AD V      T    + + GK  G+ ++I+  
Sbjct: 41  KIILGGSESVKLTAHEN-TTLDITDGEVADAVYTWGGNTEASDIKITGKRDGETDIIVTD 99

Query: 104 HDGKQMLNLDILIER 118
           H+  +   + + + +
Sbjct: 100 HETGETATIKVEVTK 114


>gi|218262835|ref|ZP_03477186.1| hypothetical protein PRABACTJOHN_02866 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223097|gb|EEC95747.1| hypothetical protein PRABACTJOHN_02866 [Parabacteroides johnsonii
           DSM 18315]
          Length = 546

 Score = 38.5 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 18/157 (11%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           R+L + + ++ ++ +     S ++     +     I +S V +      ++ + + + L 
Sbjct: 3   RFLLKGWASVCALAVMFGTVSCSE----DDKPVGTIAVSAVAVSPATA-TVKVGESVTLS 57

Query: 62  ---VPVDVQDVLV----SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114
               P D  D  +    SD   A V         + G   G A +     DG++     +
Sbjct: 58  ATITPEDATDKTITWSSSDEKVATVDAGK-----VTGVAEGTATITATTKDGEKTATCAV 112

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            +       +  +      S++ +        L G V
Sbjct: 113 TVSNSAPSSKEVILEGEITSDLTLNAADKNY-LKGFV 148


>gi|308209082|gb|ADO20886.1| S-layer protein EA1 [Bacillus weihenstephanensis]
          Length = 824

 Score = 38.5 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 21/161 (13%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVL-----VSDPTKADVVVHSPRTMYLFGKNV 94
           +D  +G G  ++  L+      V  D  D+      V +   A   +   +T+ + GK  
Sbjct: 621 ADTTLGAGNTVNYQLSNYTTEGVYADAADLAGYELRVGNEGIASAKIEG-KTLKVTGKKA 679

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           G  +VIL   DG    +  I + ++   +       +   ++ VE   +  V        
Sbjct: 680 GVTDVILT-KDGATAGHATITVTQENIQITS-----VKFKDVEVEQFENRKV-------- 725

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
            D  R +++ ++           N S++  + +++  GE+Q
Sbjct: 726 -DIDRVLDVVKSDKDDVLNGIKLNISTEHKVRIVDAEGENQ 765


>gi|193697813|ref|XP_001943635.1| PREDICTED: CAD protein-like [Acyrthosiphon pisum]
          Length = 2235

 Score = 38.5 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 63/189 (33%), Gaps = 19/189 (10%)

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                GG  + + G+F   G          + AL     +  L  P +  +  Q++   +
Sbjct: 398 LILGSGGLSIGQAGEFDYSG-------SQAIKALREENIVTILINPNIATV--QTSLGLA 448

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR---IQTEVSEPVIGVNAG 346
              +              +    G++L F         I L+   I  + +  V+G    
Sbjct: 449 NKVYFLPLELDFVSQVIQSERPDGILLTFGGQTALNCGIELKKSGILEKYNIKVLGTPIE 508

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL-GALFR----NS 401
            + +   RK  +   +  G  +  + ++    ++  E +  L   P+L  + F      S
Sbjct: 509 TIIATEDRKQFSDRVVEIGERVAPSSVV-TSYEEALEAVKTLGY-PLLVRSAFSLGGLGS 566

Query: 402 RFNREETEI 410
            F   E+E+
Sbjct: 567 GFANNESEL 575


>gi|257457694|ref|ZP_05622861.1| ABC transporter, permease protein [Treponema vincentii ATCC 35580]
 gi|257445080|gb|EEV20156.1| ABC transporter, permease protein [Treponema vincentii ATCC 35580]
          Length = 310

 Score = 38.5 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L+    +S   I + A  +  Y  R    +  +       +A +++ D       IP
Sbjct: 89  SITLKADQVISGTAINMLAAALTIYMARTITGSGNVR------VASIIRQD-------IP 135

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
            LSKIP+LG LF +  +      + I  
Sbjct: 136 GLSKIPVLGPLFFSQVYWSTWLVLVILI 163


>gi|160915695|ref|ZP_02077903.1| hypothetical protein EUBDOL_01704 [Eubacterium dolichum DSM 3991]
 gi|158432171|gb|EDP10460.1| hypothetical protein EUBDOL_01704 [Eubacterium dolichum DSM 3991]
          Length = 2026

 Score = 38.5 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 48/140 (34%), Gaps = 10/140 (7%)

Query: 61   QVPVDVQDVLVSDPTKADVVVHSPRT---MY-LFGKNVGQANVILIGHDGKQ-MLNLDIL 115
            + P     V  S+P  A +V  + +    +Y + G + G A + L     K    +  + 
Sbjct: 1605 ECPNKFFTVTSSNPEVASIVTLADKNGNPIYKVRGVSEGDATITLTSAADKTKTASYVVR 1664

Query: 116  IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
            + +     +  L + I D      + +D        +  +    A++++    +      
Sbjct: 1665 VVKGAD--KKELAQLIEDYK---NLAADNYTAESYAKFEKALAEALKVNSDVDATRAEVD 1719

Query: 176  YANSSSKKVMNLLNIAGEDQ 195
             A  + +  +  L     D+
Sbjct: 1720 NATVALRNAVMSLETKPVDE 1739


>gi|229918368|ref|YP_002887014.1| hypothetical protein EAT1b_2653 [Exiguobacterium sp. AT1b]
 gi|229469797|gb|ACQ71569.1| hypothetical protein EAT1b_2653 [Exiguobacterium sp. AT1b]
          Length = 1253

 Score = 38.5 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 40/312 (12%), Positives = 96/312 (30%), Gaps = 46/312 (14%)

Query: 61   QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK------NVGQANVILIGHDGKQMLNLDI 114
            ++P  ++ V + D    +  V +P  + L  K        G  N+ L    G + +  ++
Sbjct: 739  KLPSQLEVVAIRDANGKEYPVTNPNEIKLQLKPDLYYERNGNTNIFLPNDSGNRTVKFEV 798

Query: 115  LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
            ++               + S I+++   +   L  ++   +     ++    +  +    
Sbjct: 799  VVRA----------IEPSASLIQLKKADNQ--LTSLIEYSKKRDHILDKHNDWDKELEVQ 846

Query: 175  QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----- 229
                        L+NI        +  I +V   I  Q     +IT +      +     
Sbjct: 847  SSFPDL------LINIGAPY--AYEAKIPDVTLQIGAQQIVSPTITDAKGNTFTNPKWKS 898

Query: 230  -----FAADFGGKFVSEGGDFSVKGV-LDRFSFETVLH------ALERATAIRTLAEPTL 277
                   A+   K V++G +  V G+          +        +   + +  ++ P  
Sbjct: 899  LKWEIVDANGVAKLVTQGNNAIVTGLKTGTAKLRLTIDPGDKKPLVIAESKVNVISPPEQ 958

Query: 278  TAISGQSASFTSGGQHLYKTVSSSTGATSVTT-HDYGVVLHFTPTVLSPGRIGLRIQTEV 336
             AI               K +  +    SV    + G  + F    +      + ++   
Sbjct: 959  LAIPSTELYVGQTTTVTPKVMPETAQYKSVRYVVESGDSVKFE--QVGNNLNIIGLKPGT 1016

Query: 337  SEPVIGVNAGDM 348
            ++    V+ GD+
Sbjct: 1017 TQFKATVDVGDL 1028


>gi|49083486|gb|AAT51046.1| PA2633 [synthetic construct]
          Length = 274

 Score = 38.5 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 46/153 (30%), Gaps = 8/153 (5%)

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            +     +  G+  ++      + +  +  + R+T  R+     + A  G  A    G  
Sbjct: 102 GYSVDGSASAGNIEIQSGRGEVNGKDRVRIIRRSTDSRSGGSQQVQATEGYPALIQVGQS 161

Query: 293 HLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
               + ++       +     +     + T T+         +   +S     ++     
Sbjct: 162 VPITSTATGPYGQIYSQTEYRNVNRGFYVTATLTGN-----LVHVTISSSNDRLSQSHPG 216

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
               +  DT V    G  I L G+ + +    +
Sbjct: 217 VIDTQSTDTRVSGKLGEWITLGGVSEQNQADQR 249


>gi|15597829|ref|NP_251323.1| hypothetical protein PA2633 [Pseudomonas aeruginosa PAO1]
 gi|254241065|ref|ZP_04934387.1| hypothetical protein PA2G_01747 [Pseudomonas aeruginosa 2192]
 gi|313107670|ref|ZP_07793853.1| hypothetical protein PA39016_001050022 [Pseudomonas aeruginosa
           39016]
 gi|9948700|gb|AAG06021.1|AE004691_12 hypothetical protein PA2633 [Pseudomonas aeruginosa PAO1]
 gi|126194443|gb|EAZ58506.1| hypothetical protein PA2G_01747 [Pseudomonas aeruginosa 2192]
 gi|310880355|gb|EFQ38949.1| hypothetical protein PA39016_001050022 [Pseudomonas aeruginosa
           39016]
          Length = 273

 Score = 38.5 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 46/153 (30%), Gaps = 8/153 (5%)

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            +     +  G+  ++      + +  +  + R+T  R+     + A  G  A    G  
Sbjct: 102 GYSVDGSASAGNIEIQSGRGEVNGKDRVRIIRRSTDSRSGGSQQVQATEGYPALIQVGQS 161

Query: 293 HLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
               + ++       +     +     + T T+         +   +S     ++     
Sbjct: 162 VPITSTATGPYGQIYSQTEYRNVNRGFYVTATLTGN-----LVHVTISSSNDRLSQSHPG 216

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
               +  DT V    G  I L G+ + +    +
Sbjct: 217 VIDTQSTDTRVSGKLGEWITLGGVSEQNQADQR 249


>gi|251799238|ref|YP_003013969.1| S-layer domain protein [Paenibacillus sp. JDR-2]
 gi|247546864|gb|ACT03883.1| S-layer domain protein [Paenibacillus sp. JDR-2]
          Length = 2141

 Score = 38.5 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 106/346 (30%), Gaps = 34/346 (9%)

Query: 30   KEANAAVINISDVEIGKGKKISIGLNKVIILQV---PVDV--QDV--LVSDPTKADVVVH 82
              A    I ++ +      ++ + L+    + V   P +   + V    ++   A V   
Sbjct: 1614 NSAAETPIRVTGLTANTPSQLQLSLDSSAQINVAVVPAEAGNKRVVWSSANSKVAYVSAA 1673

Query: 83   SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
                  +    +G   +     DG       + +  + +    +           +    
Sbjct: 1674 G----LVKAVGIGSTVITAKSTDGNLEKQFVVAVASNDSSSNPSSGGTTTQPGPDLTDKG 1729

Query: 143  DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK-------VMNLLNIAGEDQ 195
              + L     TI  S   V  +     +      A S+          ++ L N  G  +
Sbjct: 1730 --IKLGQDAVTIVRSTDGVTEAAIDAKKLQDAFQALSAKPSSVKFNSVIIELKNNGGSVK 1787

Query: 196  VTLKVT-IAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKFVSEGGDFSVKGVLDR 253
            V +  + +A+V +D+        +  GS   P K+   AD   K  +   + ++  V+D+
Sbjct: 1788 VNIPSSGLADVGKDLSDASILILTDFGSYKVPVKALGLADIAQKLGTSLENMTLSVVIDK 1847

Query: 254  FS-FETVLHALERATAIRTLAEP----TLTAISGQSASFTSG-------GQHLYKTVSSS 301
             +     L A + +    TL  P     + A +   +   +G          +     + 
Sbjct: 1848 VAGSTADLLAEQASKEGLTLLAPALDYKIYAQANGKSVEITGFGSTYIERTVIVPGAVNQ 1907

Query: 302  TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
              AT++  +       F P+VL           + +   I     D
Sbjct: 1908 ANATALLFNPDTRTFTFVPSVLEDNGGSTEFVIKRNGNSIYAVVSD 1953


>gi|218526198|gb|ACK86506.1| carbamoyl-phosphate synthase [Libelloides rhomboideus rhomboideus]
          Length = 686

 Score = 38.5 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 12/161 (7%)

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           K  +  V+ ++  ++ ++   + S+  P K      GG  + + G+F   G         
Sbjct: 42  KAHVVSVKNELTNRLSYKPEQSLSNEIPKKVLIIGSGGLSIGQAGEFDYSG-------SQ 94

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            + AL+       L  P +  +  Q++   +   +    V         +    GV+L F
Sbjct: 95  AIKALKEENIQTVLINPNIATV--QTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLLTF 152

Query: 319 TPTVLSPGRIGLR---IQTEVSEPVIGVNAGDMPSYRVRKA 356
                    + L    +  +    ++G     +     RK 
Sbjct: 153 GGQTALNCGVELEKANVFAKYGWKILGTPIQSIIETEDRKM 193


>gi|107102154|ref|ZP_01366072.1| hypothetical protein PaerPA_01003204 [Pseudomonas aeruginosa PACS2]
 gi|254235618|ref|ZP_04928941.1| hypothetical protein PACG_01546 [Pseudomonas aeruginosa C3719]
 gi|296388907|ref|ZP_06878382.1| hypothetical protein PaerPAb_12190 [Pseudomonas aeruginosa PAb1]
 gi|126167549|gb|EAZ53060.1| hypothetical protein PACG_01546 [Pseudomonas aeruginosa C3719]
          Length = 273

 Score = 38.5 bits (88), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 45/152 (29%), Gaps = 8/152 (5%)

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            +     +  G+  ++      + +  +  + R+T  R+     + A  G  A    G  
Sbjct: 102 GYSVDGSASAGNIEIQSGRGEVNGKDRVRIIRRSTDSRSGGSQQVQATEGYPALIQVGQS 161

Query: 293 HLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
               + ++       +     +     + T T+         +   +S     ++     
Sbjct: 162 VPITSTATGPYGQIYSQTEYRNVNRGFYVTATLTGN-----LVHVTISSSNDRLSQSHPG 216

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
               +  DT V    G  I L G+ + +    
Sbjct: 217 VIDTQSTDTRVSGKLGEWITLGGVSEQNQADQ 248


>gi|218891206|ref|YP_002440072.1| putative secretion system protein [Pseudomonas aeruginosa LESB58]
 gi|218771431|emb|CAW27198.1| putative secretion system protein [Pseudomonas aeruginosa LESB58]
          Length = 273

 Score = 38.5 bits (88), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 45/152 (29%), Gaps = 8/152 (5%)

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            +     +  G+  ++      + +  +  + R+T  R+     + A  G  A    G  
Sbjct: 102 GYSVDGSASAGNIEIQSGRGEVNGKDRVRIIRRSTDSRSGGSQQVQATEGYPALIQVGQS 161

Query: 293 HLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
               + ++       +     +     + T T+         +   +S     ++     
Sbjct: 162 VPITSTATGPYGQIYSQTEYRNVNRGFYVTATLTGN-----LVHVTISSSNDRLSQSHPG 216

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
               +  DT V    G  I L G+ + +    
Sbjct: 217 VIDTQSTDTRVSGKLGEWITLGGVSEQNQADQ 248


>gi|328875482|gb|EGG23846.1| dihydroorotase [Dictyostelium fasciculatum]
          Length = 2221

 Score = 38.5 bits (88), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 12/135 (8%)

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G +K      GG  + + G+F   G          + AL+       L  P +  +  Q+
Sbjct: 398 GITKVLLLGSGGLSIGQAGEFDYSG-------SQAIKALKEEGIKTVLINPNIATV--QT 448

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR---IQTEVSEPVI 341
           +   +   +     ++S     +     G+++ F         I L    I  + +  V+
Sbjct: 449 SPGLADKVYFLPVNAASVTKVIINEKPDGILVTFGGQTALNCGIELYKSGILEKYNVKVM 508

Query: 342 GVNAGDMPSYRVRKA 356
           G     + S   R  
Sbjct: 509 GTPIDTIISTEDRGI 523


>gi|116050620|ref|YP_790561.1| hypothetical protein PA14_30070 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585841|gb|ABJ11856.1| putative secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 273

 Score = 38.5 bits (88), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 45/152 (29%), Gaps = 8/152 (5%)

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            +     +  G+  ++      + +  +  + R+T  R+     + A  G  A    G  
Sbjct: 102 GYSVDGSASAGNIEIQSGRGEVNGKDRVRIIRRSTDSRSGGSQQVQATEGYPALIQVGQS 161

Query: 293 HLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
               + ++       +     +     + T T+         +   +S     ++     
Sbjct: 162 VPITSTATGPYGQIYSQTEYRNVNRGFYVTATLTGN-----LVHVTISSSNDRLSQSHPG 216

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
               +  DT V    G  I L G+ + +    
Sbjct: 217 VIDTQSTDTRVSGKLGEWITLGGVSEQNQADQ 248


>gi|260829361|ref|XP_002609630.1| hypothetical protein BRAFLDRAFT_83617 [Branchiostoma floridae]
 gi|229294992|gb|EEN65640.1| hypothetical protein BRAFLDRAFT_83617 [Branchiostoma floridae]
          Length = 875

 Score = 38.5 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 12/134 (8%)

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           PSK      GG  + + G+F   G          + AL+       L  P +  +  Q++
Sbjct: 24  PSKVLILGSGGLSIGQAGEFDYSG-------SQAIKALKEEGIQTVLINPNIATV--QTS 74

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR---IQTEVSEPVIG 342
              +   +              +    G++L F         + L    +  + +  V+G
Sbjct: 75  KGLADKVYFLPIKPDYVTQVIKSERPDGILLTFGGQTALNCGVELTKQGVLEKYNVKVLG 134

Query: 343 VNAGDMPSYRVRKA 356
                +     R+ 
Sbjct: 135 TPVSSIVMTEDREI 148


>gi|326429502|gb|EGD75072.1| notch [Salpingoeca sp. ATCC 50818]
          Length = 2986

 Score = 38.1 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V++P    V         L G   GQA ++L    G  +  + I +              
Sbjct: 500 VTNPNVVRV---DRERFTLTGTAPGQATLVLQNTFGDLLATVSIEVSTAQVSALSVDAAA 556

Query: 131 IADSNIRVEMVSDTVVLHGMV 151
              +N+ + + +D +  +G  
Sbjct: 557 YQPANVSLRLSNDELAQNGDA 577


>gi|160878916|ref|YP_001557884.1| inner-membrane translocator [Clostridium phytofermentans ISDg]
 gi|160427582|gb|ABX41145.1| inner-membrane translocator [Clostridium phytofermentans ISDg]
          Length = 317

 Score = 38.1 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I ++    +S   + + A     +  R+     ++    T  +            + +P
Sbjct: 88  SIHMKADQTISGTALNMFAPAFAIFTARQIQGVQQINFDNTFRI------------QKVP 135

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +L  IPILG L   + +        +     +V
Sbjct: 136 VLGDIPILGELLFQNSYITTYLGFLVLIIASIV 168


>gi|312019782|emb|CBH95064.1| major tail protein V [Enterobacteria phage phi80]
          Length = 247

 Score = 38.1 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            + V +G    +++ +N             V  +D  KA V   +  T+ + G   G A+
Sbjct: 171 TASVAVGATTTLNVTVNPA---SASDKSFRVSSADRAKATVTA-NGNTLTVTGVAAGTAD 226

Query: 99  VILIGHDGKQMLNLDILIER 118
           +I++  DG  +    + +  
Sbjct: 227 IIVMTSDGNFVAVCKVTVTA 246


>gi|156030991|ref|XP_001584821.1| hypothetical protein SS1G_14276 [Sclerotinia sclerotiorum 1980]
 gi|154700667|gb|EDO00406.1| hypothetical protein SS1G_14276 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1551

 Score = 38.1 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 21/91 (23%)

Query: 329 GLRIQTEVSEPVIGVNAGDMPS-------YRVRKADTTVELPSG-GTIVLA--G------ 372
            L +      P  G+NA  +P         RVR AD+ V    G  T  +   G      
Sbjct: 36  SLHVDLIKHNPDSGLNAPSVPLNSSTSDLSRVRSADSGVSADDGFRTQAIGQAGVDKPPT 95

Query: 373 LLKDDIQQLKEGI-----PLLSKIPILGALF 398
           L +         +     P L + P L  LF
Sbjct: 96  LYRSSTTNSAVKVRRHQIPGLRQTPYLKILF 126


>gi|78188507|ref|YP_378845.1| hypothetical protein Cag_0529 [Chlorobium chlorochromatii CaD3]
 gi|78170706|gb|ABB27802.1| hypothetical protein Cag_0529 [Chlorobium chlorochromatii CaD3]
          Length = 4697

 Score = 38.1 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 57/384 (14%), Positives = 131/384 (34%), Gaps = 35/384 (9%)

Query: 12   MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ--VPVDVQDV 69
             +I    + P+++   P   A  AV   +++ +   + ++    K ++L       +  +
Sbjct: 846  FTITPDVTAPTLSSSIPADNA-VAVAVGANIVLNFSESVTAVAGKNVVLHNVTDSTITTI 904

Query: 70   LVSDPTK---ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
              +D      ADVV+ +P   +L GK     +  +    G  +   D          + T
Sbjct: 905  AANDAQVSIVADVVIINPTADFLNGK-----DYYVTVDAGAFI---DGAGNGYAGITDAT 956

Query: 127  LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
            L  F    ++    +S ++     V     +   +  SE+  + +G+N   ++ +     
Sbjct: 957  LLNFTITPDVTAPTLSSSIPADNAVAVAVGANIVLNFSESVTAVAGKNVVLHNVTDSTTT 1016

Query: 187  LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
             +  A + QV++   +  +        G  + +T  +          + G   +   +F+
Sbjct: 1017 TI-AANDAQVSIVAGVVIINPTADLLNGKDYYVTVDAGAFIDGAGNGYAGIADATLLNFT 1075

Query: 247  VKGVLDRFSFETVL---HALERATAIRTLAE--PTLTAISGQSASFTSGGQHLYKTVSSS 301
            +   +   +  + +   +AL  A     +     ++TA++G+S    +       T++++
Sbjct: 1076 ITSDVTAPTLSSSIPADNALAVAVDANIVLNFSESVTAVAGKSVVLHNVTDSSTTTIAAN 1135

Query: 302  TGATSVTT--------------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
                S+                 DY V +     +   G     I    +          
Sbjct: 1136 DAQVSIVAGVVIINPTADFLNGKDYYVTVDAGAFIDGAGNSYAGIADAATLNFTTTPDVT 1195

Query: 348  MPSYRVRK-ADTTVELPSGGTIVL 370
             P+      AD  V +  G  IVL
Sbjct: 1196 APTLSSSIPADNAVAVAVGANIVL 1219


>gi|332881096|ref|ZP_08448764.1| bacterial group 2 Ig-like protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681008|gb|EGJ53937.1| bacterial group 2 Ig-like protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 447

 Score = 38.1 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 63/194 (32%), Gaps = 10/194 (5%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQVPV 64
           + F     +    +    A      +A+    N  ++ + K    + +     + +    
Sbjct: 2   KRFNPFCVMVALFALIIAACSKDDNKADNKPENPKELILEKTSLTLKVAETATLTVTSGN 61

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
               V V+D   A   V +  T+ +     G+  V +    GK   +L + +    A ++
Sbjct: 62  GSYTVKVADQAVASATV-TQNTLKITAIAQGETVVTVADAKGKT-ASLSVTVTGIFAVVD 119

Query: 125 MTLRRFIADSNIRVEMVSDTV------VLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
            ++      +   V++ +         V  G+V     +   + +    +  +       
Sbjct: 120 KSVTVE-NGAKTDVKLQNGHANYNCVCVPEGVVLVSAKTDNVLSVEGLKVGSATVTVTDV 178

Query: 179 SSSKKVMNLLNIAG 192
            S K+ +  + + G
Sbjct: 179 QSGKQDIFEVTVTG 192


>gi|291456388|ref|ZP_06595778.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Bifidobacterium
           breve DSM 20213]
 gi|291381665|gb|EFE89183.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Bifidobacterium
           breve DSM 20213]
          Length = 396

 Score = 38.1 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 23/173 (13%)

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI--ERDIAHLEMTLRRF----- 130
           DV+   P    + G   G A++ L+     Q    ++ +     I  L+  L++      
Sbjct: 24  DVIARHPERFTVTGLAAGGAHIELLARQAAQFRVPEVAVFDSTKIPALKEALQQAGARDT 83

Query: 131 ----IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
                 D+ I +      VVL+G+  +       + L  +  +    +Q A ++ + V+ 
Sbjct: 84  RVTGGPDAVIALAGSGANVVLNGITGS-------IGLEPSIAALKANSQLALANKESVVA 136

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSFAADFGGKF 238
             ++    QV       ++     +      S+ +G+ +  SK      GG F
Sbjct: 137 GGHLLFSAQVRDD----QINPVDSEHSAIWQSLRSGTHAEVSKLVVTASGGPF 185


>gi|149178593|ref|ZP_01857180.1| hypothetical protein PM8797T_13750 [Planctomyces maris DSM 8797]
 gi|148842611|gb|EDL56987.1| hypothetical protein PM8797T_13750 [Planctomyces maris DSM 8797]
          Length = 767

 Score = 38.1 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 60/202 (29%), Gaps = 25/202 (12%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+T    + E   D+  Q   + +        + +       K        +   V + F
Sbjct: 526 QITFASILMETTSDVAAQTDIEWTGLAGFQNTTAAPHQPHLDKTNPRPVVQASAAVEEYF 585

Query: 255 SFET----------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                         ++ A +R         P +T  +GQ  S  +  Q  +        +
Sbjct: 586 PISVAVINEQQEFKLIQAAQRDERSHCAFNPKVTLFNGQKGSIVNQVQRPFVIGVHKAKS 645

Query: 305 TSVTTH----DYGVVLHFTPTVLSPGR-IGLRIQTEVSEPV------IGVNA----GDMP 349
             +         G+ L   P + +    + L +  + SE          V+       +P
Sbjct: 646 GELKPELKVIAEGMTLELRPILTADHTAVRLEVLVKQSEISRVKILETQVSGKKINFQVP 705

Query: 350 SYRVRKADTTVELPSGGTIVLA 371
           S   R+     +L    +++++
Sbjct: 706 SVEQRRISVAADLSGKNSLLIS 727


>gi|289600672|gb|ADD13203.1| carbomoylphosphate synthase [Axinidris mlalu]
          Length = 321

 Score = 38.1 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 19/171 (11%)

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            I G  Q+++K         + + + ++ +I  +   P K      GG  + + G+F   
Sbjct: 70  EIGGHSQISIKDR-------LTRNLTYESAIPITIGRPKKVLILGSGGLSIGQAGEFDYS 122

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G          + AL+  +    L  P +  +  Q++   +   +    +         +
Sbjct: 123 G-------SQAIKALKEESIQTLLINPNIATV--QTSKGMADKVYFLPIIPEYVEQVIQS 173

Query: 309 THDYGVVLHFTPTVLSPGRIGLR---IQTEVSEPVIGVNAGDMPSYRVRKA 356
               GV+L F         + L    + T+ +  ++G     +     RK 
Sbjct: 174 ERPDGVLLTFGGQTALNCGVELEKNGVFTKYNVKILGTPIESIIQTEDRKI 224


>gi|196228089|ref|ZP_03126956.1| hypothetical protein CfE428DRAFT_0120 [Chthoniobacter flavus
           Ellin428]
 gi|196227492|gb|EDY21995.1| hypothetical protein CfE428DRAFT_0120 [Chthoniobacter flavus
           Ellin428]
          Length = 478

 Score = 38.1 bits (87), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           +E  +   +    S  +               T   T + G+ + F P +   G+  + I
Sbjct: 341 SETGVITDNKGETSNLTLSHTPSNARRDPGFGTKFDTRNAGITVEFEPVLREDGK-RMDI 399

Query: 333 QTEVSE---------PVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              +           P IG N    P ++  K  T+  + SG T
Sbjct: 400 NEVIQNVHFRGMLKVPGIGANYQPQPLFQTSKIMTSQTVISGRT 443


>gi|89893914|ref|YP_517401.1| hypothetical protein DSY1168 [Desulfitobacterium hafniense Y51]
 gi|219668288|ref|YP_002458723.1| inner-membrane translocator [Desulfitobacterium hafniense DCB-2]
 gi|89333362|dbj|BAE82957.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538548|gb|ACL20287.1| inner-membrane translocator [Desulfitobacterium hafniense DCB-2]
          Length = 321

 Score = 38.1 bits (87), Expect = 3.3,   Method: Composition-based stats.
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 374 LKDDIQQLKEGIPLLSKIPILGALF 398
           +  ++      +P L  +P++G LF
Sbjct: 124 ITTNVNFYLRKVPFLGDLPVIGKLF 148


>gi|332670422|ref|YP_004453430.1| cellulose-binding family II protein [Cellulomonas fimi ATCC 484]
 gi|332339460|gb|AEE46043.1| cellulose-binding family II [Cellulomonas fimi ATCC 484]
          Length = 918

 Score = 38.1 bits (87), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 15/175 (8%)

Query: 88  YLFGKNV---GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSD 143
           +L+G      G +N+      G     + I +          L        ++ V  + D
Sbjct: 438 FLYGTGATVYGGSNLTAWDSGG----TVKIGVRAQGIEETAVLDLAAPPGPVQLVSGLGD 493

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
              + G V T      A   ++ +        +A +       ++ +      T++  I 
Sbjct: 494 ---VGGFVHTDITKVPAQMYTQPYHGSVTGVDFAEAKPAT---MVRVGQAVDGTVESHIG 547

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
            V               G + G + + +AD G    S  G    +      S+  
Sbjct: 548 -VTTSSGSSWWAGQQPAGVTGGGTVALSADGGTIVWSPAGTGVHRSTTLGSSWTA 601


>gi|260220456|emb|CBA28011.1| hypothetical protein Csp_A05150 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 211

 Score = 38.1 bits (87), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 21/129 (16%)

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----------------- 305
           L        +A   +   +G+  S         + V S+   +                 
Sbjct: 53  LGTKPDAPLMAPQKIQVRNGEKGSLRMNQSVPMQWVQSANSQSNSISAGGTSVSSSGGGV 112

Query: 306 --SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVEL 362
             SV   D G  +  TP     G     ++ +V +  + V N  DMP     +  TTV  
Sbjct: 113 TQSVQWFDVGQSITVTPR-WPGGNKDATVEIDVQQADMAVRNNADMPRQTRNQLSTTVST 171

Query: 363 PSGGTIVLA 371
           P G  + +A
Sbjct: 172 PLGQWVTIA 180


>gi|322835199|ref|YP_004215225.1| Ig domain protein group 2 domain protein [Rahnella sp. Y9602]
 gi|321170400|gb|ADW76098.1| Ig domain protein group 2 domain protein [Rahnella sp. Y9602]
          Length = 245

 Score = 38.1 bits (87), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-----VQDVLVSDPTKADVVVHSPRT 86
             AAV             + +G N VI + V  D       +V  +DPT A  +  S  T
Sbjct: 154 QAAAVPVTGVTVTQSTTSVVVGQNAVITVAVLPDGATNGAFNVAAADPTVA-TLTVSGNT 212

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +   G   G   +I++ +DG+++    + +  
Sbjct: 213 VTAKGLKAGTTQLIVMTNDGQKVAICTLTVTA 244


>gi|330810460|ref|YP_004354922.1| hypothetical protein PSEBR_a3579 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378568|gb|AEA69918.1| Conserved hypothetical protein; putative exported protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 253

 Score = 38.1 bits (87), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 8/109 (7%)

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
             + A  GQ A    G    + +  +       +     +     + T +V         
Sbjct: 124 QQVQASEGQPALIQVGQSVPFTSSQTDNYGRLQSQTEYRNVTQGFYVTASVTGE-----T 178

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +   +S     ++        V+  DTTV    G  I LAG+ +     
Sbjct: 179 VHLSISTNRDRMSQERPDVVNVQSTDTTVSGRLGEWITLAGVNRQTQAD 227


>gi|46204952|ref|ZP_00049249.2| COG5492: Bacterial surface proteins containing Ig-like domains
           [Magnetospirillum magnetotacticum MS-1]
          Length = 443

 Score = 38.1 bits (87), Expect = 3.5,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 62/205 (30%), Gaps = 17/205 (8%)

Query: 46  KGKKISIGLNKVIILQ---VPVDVQDVLVS-DPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             + + +G+     L     P +     ++     ADV   S   + + G   G A V  
Sbjct: 252 TPESLEVGVGGTRQLTATVTPANATARAITWASDDADVATVSADGV-VTGVGEGHALVTA 310

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
              DG +   + + +  D+  L +      A         ++T            +  A 
Sbjct: 311 TTADGSRTAYVAVEVTADVPGLVVR----YAFDETSGTAAANTAPGSSFGPATLTNGAAF 366

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
             +   ++  G + Y +     +  L ++     V L V +A           F + +  
Sbjct: 367 SGTGEGVTLDGTDDYVDLPDHLLAGLTDVT----VALDVKVA----TDQATPYFVYGLGN 418

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFS 246
           +S      +    G  + +     +
Sbjct: 419 TSGTAGDGYLFTTGNAYRTSIAIGN 443


>gi|229028679|ref|ZP_04184792.1| hypothetical protein bcere0028_7920 [Bacillus cereus AH1271]
 gi|228732642|gb|EEL83511.1| hypothetical protein bcere0028_7920 [Bacillus cereus AH1271]
          Length = 874

 Score = 38.1 bits (87), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 21/161 (13%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVL-----VSDPTKADVVVHSPRTMYLFGKNV 94
           +D  +G G  ++  L+      V  D  D+      V +   A   +   +T+ + GK  
Sbjct: 633 ADTTLGAGNTVAYQLSNYTTEGVYADAADLAGYEFRVGNDAIASAKIEG-KTLKVTGKTA 691

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           G  +VIL   DG    +  I + ++   +       +   ++ VE   +  V        
Sbjct: 692 GVTDVILT-KDGATAGHATITVTQENIQITS-----VKFKDVEVEQFENRKV-------- 737

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
            D  R +++ ++           N S++  + +++  G DQ
Sbjct: 738 -DIDRVLDVVKSDKDDVLNGIKLNISTEHKVRIVDAEGTDQ 777


>gi|293372378|ref|ZP_06618762.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f]
 gi|292632561|gb|EFF51155.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f]
          Length = 394

 Score = 38.1 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 94/267 (35%), Gaps = 30/267 (11%)

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD---IAHLE 124
            V  S+   A   V S   + + G   G A + +I        N+ +++ ++        
Sbjct: 61  KVSSSNAAVATA-VISGNEVIVTGLKYGTATLTVIDWTKNS-ANVKVVVAQEQELAVKTS 118

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS----QRAVELSETFLSQSGRNQYANSS 180
            T   F     + +   +    +     ++  +       +E++ + +  +      +S 
Sbjct: 119 STTMFFEEHKTLEIYTGNGGYSITSSNESVATAKISEDGKIEITSSIVPGTAILTVKDSH 178

Query: 181 SK------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
           +K      KV+  L +   + +T  +T   V   IL          G  +    ++++ +
Sbjct: 179 NKTAEIAVKVIKRLVVDNSEDITYLITSEPVTIKILD-------GNGEYTCTPPNYSSSY 231

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATA-----IRTLAEPTLTAISGQSASFTS 289
               ++E G   +   L R  F   +   ++        I+T+ EP        S  +  
Sbjct: 232 LKCTMAENGTEVIIEGLKRNYFNKAITIKDKEGQSIDIHIKTIDEP---YWENPSYRYLI 288

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVL 316
            G + Y+ +S++    ++ + +  + L
Sbjct: 289 AGSYAYQYLSTAKVGEAIYSEELNISL 315


>gi|313115634|ref|ZP_07801091.1| bacterial Ig-like domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622050|gb|EFQ05548.1| bacterial Ig-like domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 506

 Score = 37.7 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 103/313 (32%), Gaps = 18/313 (5%)

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           V +SD T   ++  S   + +    VG   +      G Q+    I++  D + +   + 
Sbjct: 84  VFISDDT--SILTVSNSGV-VQAVGVGTTRITA--AAGNQICAYTIVVSMDSSMIVTEMD 138

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA-VELSETFLSQSGRNQYA--NSSSKKVM 185
             ++ + I V    ++V     VR    S  A V L+ +    +  N +      +    
Sbjct: 139 LSLSSNTIYV---GNSVSAQLQVRPTSASNYATVALTSSNEKVATVNNFGRVTGIAPGTA 195

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
            +    G    T  VT+  +            S +G     + S+     G   +     
Sbjct: 196 TITATCGSVTATTNVTVMSIPNSSTGTASTGSSNSGQVVTVNPSYVVLKPGATRTLTASV 255

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLA-----EPTLTAISGQ-SASFTSGGQHLYKTVS 299
                  +F++++    +   +    +        ++T  +G  SA  T        + S
Sbjct: 256 KPSSASQKFTYKSANSNIATVSPSGVITAVGTGATSITVSNGTASAMVTVIVNRSAASSS 315

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            ++  +S T  D    +   P V +        +   ++  +    GD+ +       T 
Sbjct: 316 DNSSDSSSTEPDNDTPIEIDPVVQAIQDSE-DNEIVFTQAEVPTVTGDILNALRTTGKTL 374

Query: 360 VELPSGGTIVLAG 372
             +  G T+ +AG
Sbjct: 375 CVVGDGYTMQIAG 387


>gi|238755357|ref|ZP_04616699.1| hypothetical protein yruck0001_7720 [Yersinia ruckeri ATCC 29473]
 gi|238706392|gb|EEP98767.1| hypothetical protein yruck0001_7720 [Yersinia ruckeri ATCC 29473]
          Length = 182

 Score = 37.7 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 34/191 (17%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV +   I  V            S    S           G   V E           +
Sbjct: 3   RQVAIHTQILRVEAP-SNNKKIDWSAVVKSPFTDTPADEFSGVAIVDE-----------K 50

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
              +  + AL     +  + + T    +   A F       Y+  S S           G
Sbjct: 51  PGAKGFISALSTQATVSVITQSTTLTTNQAVAPFQ------YQQESGSNNE--------G 96

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADT---TVELPSGG 366
           V +   P ++      +++Q  +S     +    + G+          T    V + SG 
Sbjct: 97  VNMTVLPLLMPSSS-KMQLQLSLSGYDTQIQPFSSGGNTVELTKTHLKTFTQRVNIQSGQ 155

Query: 367 TIVLAGLLKDD 377
           T+VL+G+  + 
Sbjct: 156 TLVLSGMSSNQ 166


>gi|254520856|ref|ZP_05132912.1| ABC transporter [Clostridium sp. 7_2_43FAA]
 gi|226914605|gb|EEH99806.1| ABC transporter [Clostridium sp. 7_2_43FAA]
          Length = 315

 Score = 37.7 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 14/88 (15%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L     +S   I + AG +  +  R         SG   V  G +  D       IP
Sbjct: 88  SINLNANQVISGTAINMIAGALTVFLARNIT-----GSGNIRVTNGFIPKD-------IP 135

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
           +LS+IPI+G LF    +    T + I  
Sbjct: 136 VLSQIPIIGPLFFTKTYAT--TWLVIVI 161


>gi|23506944|gb|AAN37924.1| adhesin [Haemophilus influenzae]
          Length = 1391

 Score = 37.7 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 103/338 (30%), Gaps = 38/338 (11%)

Query: 69  VLVSDPTKADVVVHSP----------RTMYLFGK-------NVGQANVIL---IGHDGKQ 108
           V V + +  +  VH+P           T+ + GK       +VG   V+L       G++
Sbjct: 415 VSVGEESTVEWQVHNPEGDRLSKIGLGTLLVNGKGKNLGSLSVGNGLVVLDQQADESGQK 474

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
               ++ I    A +++     +  +NI        + L+G   T +  Q   E +    
Sbjct: 475 QAFKEVGIVSGRATVQLNSADQVDPNNIYFGFRGGRLDLNGHSLTFERIQNTDEGAMIVN 534

Query: 169 SQSGRNQYANSSSKKVMNL--LNIAGEDQVTLKVTIAEVRRDILK-QIGFQHSITGSSSG 225
             + +      +    +N     +  +  +       E  +     ++   +    + + 
Sbjct: 535 HNASQTANITITGNATINSDSKQLTNKKDIAFNGWFGEQDKAKTNGRLNVNYQPVNAENH 594

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV---LHALERATAIRTLAEPTLT--AI 280
              S   +  G     GG     G     ++  +   L  +E       + +        
Sbjct: 595 LLLSGGTNLNGNITQNGGTLVFSGRPTPHAYNHLRRDLSNMEGIPQGEIVWDHDWINRTF 654

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV-----LSPGRIGLRIQTE 335
             ++     G   + + VSS  G  +V+ ++        P             GL     
Sbjct: 655 KAENFQIKGGSAVVSRNVSSIEGNWTVS-NNANATFGVVPNQQNTICTRSDWTGLTTCKT 713

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V      V    + S    + + ++ L    T+ + GL
Sbjct: 714 VDLTDKKV----INSIPTTQINGSINLTDNATVNIHGL 747


>gi|297584835|ref|YP_003700615.1| inner-membrane translocator [Bacillus selenitireducens MLS10]
 gi|297143292|gb|ADI00050.1| inner-membrane translocator [Bacillus selenitireducens MLS10]
          Length = 321

 Score = 37.7 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 13/78 (16%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG-LLKDDIQQLKEGI 385
            I L+    VS   +   A  +  + VR+         G T  ++  L + +       +
Sbjct: 92  SITLKADQIVSGVALNFLATGLTVFLVREI-----FERGQTDTISARLFRTN-------V 139

Query: 386 PLLSKIPILGALFRNSRF 403
           PLLS IP++G +F +  F
Sbjct: 140 PLLSDIPVIGPMFFSRIF 157


>gi|182419285|ref|ZP_02950538.1| ABC transporter, permease protein [Clostridium butyricum 5521]
 gi|237668765|ref|ZP_04528749.1| sugar ABC transporter, permease protein [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376925|gb|EDT74496.1| ABC transporter, permease protein [Clostridium butyricum 5521]
 gi|237657113|gb|EEP54669.1| sugar ABC transporter, permease protein [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 317

 Score = 37.7 bits (86), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 12/88 (13%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L     +S   I + A  +  +  R         SG   + +G    D       +P
Sbjct: 90  SINLNADQTISGTAINMIASALTIFLARTI-----AGSGRIRIQSGFYPKD-------VP 137

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
            LS+IPI+G LF    +      + I  
Sbjct: 138 FLSQIPIIGDLFFKKTYITTWLVLLILV 165


>gi|223993111|ref|XP_002286239.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977554|gb|EED95880.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 4031

 Score = 37.7 bits (86), Expect = 4.4,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 80/210 (38%), Gaps = 32/210 (15%)

Query: 167  FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSG 225
            +      +   ++S+++V N L      Q    V   EVRR+I    G+Q  +T  S+ G
Sbjct: 1428 YARSKSMSIAFDASAEEVQNAL------QQMPNVNHVEVRREIDNVDGYQWFVTFVSNEG 1481

Query: 226  PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            P  SF  D+     +    FSV          +VL  L  + A  T+A+PT++     + 
Sbjct: 1482 PQPSFTVDYSHLVGANTAGFSVT--------RSVLGVLPESYASFTIADPTVSTFDLTN- 1532

Query: 286  SFTSGGQHLYKTVSSSTGATS--VTTHDYGVV------LHFTPTVLSPGRIGLRIQTEVS 337
               +G  +  +  S S    S  V T    +       L  +P++ +     L +  E  
Sbjct: 1533 -LQTGRPYYVRVSSVSDAGESRAVDTLPAFITPGGVPELLSSPSIRAKDDHTLLVSFEAE 1591

Query: 338  EPVIG-------VNAGDMPSYRVRKADTTV 360
            E   G       +++   PS+      T +
Sbjct: 1592 EESNGAVIEEFVIDSSRDPSFSNSSRTTAL 1621


>gi|242280967|ref|YP_002993096.1| methyl-accepting chemotaxis sensory transducer with Cache sensor
           [Desulfovibrio salexigens DSM 2638]
 gi|242123861|gb|ACS81557.1| methyl-accepting chemotaxis sensory transducer with Cache sensor
           [Desulfovibrio salexigens DSM 2638]
          Length = 771

 Score = 37.7 bits (86), Expect = 4.5,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 102/312 (32%), Gaps = 24/312 (7%)

Query: 95  GQANVIL-----IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149
           G +NV++        DGK +    ++   D+  ++   +R   ++ +  E  ++   +  
Sbjct: 444 GTSNVLVNASPLFDLDGKMLGAFIMI--TDMTEIKQQQKRIEENNIMISEAAANATEVSN 501

Query: 150 MVRTIQDSQRA-VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR- 207
            V +  ++  A VE S     +        +++   MN          +    +A+  + 
Sbjct: 502 QVSSFSEALAAQVEQSSRGAEEQSVMASEAATAMDEMNSTVFEVARNASTAAELADASQK 561

Query: 208 --DILKQIGFQ----HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-KGVLDRFSFETVL 260
                +Q   Q     S+  + S   +   AD G +    G    V   + D+ +   + 
Sbjct: 562 KAGEGEQKVVQAVETISLVRAQSDQMQKDMADLGQQADGIGNIMGVISDIADQTNLLALN 621

Query: 261 HALERA-------TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            A+E A              E    A S  +A+   G        S+ T   +       
Sbjct: 622 AAIEAARAGDAGRGFAVVADEVRKLAESTMNATSEVGEYIGRIQESAKTNIANTEKSTQA 681

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           +    T  V   G I   I  +VSE    V +    S     A   +   +G    +AG 
Sbjct: 682 IG-EVTELVNQSGEILKEIVEKVSETADQVRSIATASEEQSAASEQISRSTGQINTIAGE 740

Query: 374 LKDDIQQLKEGI 385
               + +  E +
Sbjct: 741 TAQAMNESAEAV 752


>gi|327540303|gb|EGF26889.1| hypothetical protein RBWH47_03928 [Rhodopirellula baltica WH47]
          Length = 197

 Score = 37.3 bits (85), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 4/103 (3%)

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           + A      +      S    +T +    + + L   P           + + +     G
Sbjct: 64  EPARLMVQHELSVTPGSRVNQSTKMDDTTFKLNLEVQP--ADQKSYTFHVTSSLETLAPG 121

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            +     +   RK D+  +L  G + VL GL +   ++    +
Sbjct: 122 KDIARRTTI--RKVDSAFKLSPGTSFVLTGLERSGRERAITQV 162


>gi|298483793|ref|ZP_07001966.1| hypothetical protein HMPREF0106_04262 [Bacteroides sp. D22]
 gi|298270087|gb|EFI11675.1| hypothetical protein HMPREF0106_04262 [Bacteroides sp. D22]
          Length = 281

 Score = 37.3 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 4/108 (3%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEA----NAAVINISDVEIGKGKKISIGLNKVIILQ 61
           +     +   L  S P         +A        +            +SI     + ++
Sbjct: 4   KMTKLCLLFILLCSLPVFYSCSDEADAFYLYEYWEVMFDPEPPISETSLSITGGTKLGIK 63

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
             V      ++D   A   V     + +    +G  ++++   DG+ +
Sbjct: 64  GGVAPYTAEIADGQIAIAYVDENNDIQISSIKLGNTSLMVKDADGRII 111


>gi|331085627|ref|ZP_08334711.1| hypothetical protein HMPREF0987_01014 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407514|gb|EGG87016.1| hypothetical protein HMPREF0987_01014 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 317

 Score = 37.3 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 16/74 (21%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL--KEG 384
            I ++    +S   + + A     +  R              ++ G+ +         + 
Sbjct: 88  SINMKADQTISGTALNLFAPAFAIFTAR--------------MIQGVQQIQFTDTFHIDK 133

Query: 385 IPLLSKIPILGALF 398
           +P+L  IP++G +F
Sbjct: 134 VPVLGDIPVIGDMF 147


>gi|163788002|ref|ZP_02182448.1| galactose oxidase-related protein [Flavobacteriales bacterium
           ALC-1]
 gi|159876322|gb|EDP70380.1| galactose oxidase-related protein [Flavobacteriales bacterium
           ALC-1]
          Length = 1844

 Score = 37.3 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 19/103 (18%)

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           T+A P + +++G +  F  G    +    + +G T                  S     +
Sbjct: 255 TVARPDIYSMNGTTVMFDVGKILKFGGSYTYSGGTP----------------SSDNAYVI 298

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
            I  E +   + + A D      R   T+V LP+G  +++ G+
Sbjct: 299 DINDE-NNVTVTLTANDAEEG--RIFPTSVVLPNGEVMIIGGM 338


>gi|169351529|ref|ZP_02868467.1| hypothetical protein CLOSPI_02309 [Clostridium spiroforme DSM 1552]
 gi|169291751|gb|EDS73884.1| hypothetical protein CLOSPI_02309 [Clostridium spiroforme DSM 1552]
          Length = 2169

 Score = 37.3 bits (85), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 65   DVQDVLVSDPTKADVV--VHSPRTMY-LFGKNVGQANVILIGHDGKQMLN--LDILIERD 119
               ++  SD T A V+      + +Y + G   G   +     DG+        ++   D
Sbjct: 1552 PFYEITSSDETIAKVIKIPMEDKYIYAVQGIKEGTVTLTATSEDGQFTATKEFKVVEGVD 1611

Query: 120  IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
             + L+  + +   D    +  V     + G+V + ++   + ++++  + +   +
Sbjct: 1612 TSVLQGQIDK-FEDLYENLYTVESYAKVKGLVTSAKELISSKDVTQAAVDKITID 1665


>gi|77459823|ref|YP_349330.1| NolW-like [Pseudomonas fluorescens Pf0-1]
 gi|77383826|gb|ABA75339.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 250

 Score = 37.3 bits (85), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 8/109 (7%)

Query: 275 PTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
             + A  G  A    G        +T S    ++     +     + T +V       + 
Sbjct: 121 QQIQASEGAPALIQVGQSVPITSSQTNSYGDYSSQTQYRNVTQGFYVTASVTGE---TVH 177

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +    +   +     D+    V+  DTTV    G  I LAG+ +     
Sbjct: 178 LAISTNRDRMSQERPDV--VNVQSTDTTVTGRLGEWITLAGVNRQTQAD 224


>gi|332299961|ref|YP_004441882.1| Ig domain protein group 2 domain protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177024|gb|AEE12714.1| Ig domain protein group 2 domain protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 521

 Score = 37.3 bits (85), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 13/124 (10%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIG-KGKKISIGLNKVIILQVPVDVQDVLVS------D 73
            ++A L  +    +   ++S   I  + K I++ +     LQV  + +DV  +       
Sbjct: 9   ATLALLLGVASCQSNSPDVSPTNISVEPKSITMHVGDTQALQVSYEPKDVTFAISYESQS 68

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           P  A V         +     GQ ++I+  H G +     + +    A +E  L     +
Sbjct: 69  PEIATVTEQG----VVQAVKEGQTSIIV--HVGDKQATCPVSVVAKEAPVETVLTITTPE 122

Query: 134 SNIR 137
             ++
Sbjct: 123 ITVQ 126


>gi|146307429|ref|YP_001187894.1| NolW domain-containing protein [Pseudomonas mendocina ymp]
 gi|145575630|gb|ABP85162.1| NolW domain protein [Pseudomonas mendocina ymp]
          Length = 269

 Score = 37.3 bits (85), Expect = 5.6,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 56/189 (29%), Gaps = 10/189 (5%)

Query: 200 VTIAEVR--RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
             I E+R     L     +  IT  S+  S      +        G+  V+      +  
Sbjct: 63  AKIGEIRVLLQQLDTRPRRLLITVESADSSYQNDRGYRVDGTLSAGNAEVQVGRGEVNGR 122

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGV 314
             +  + R+T  R      + A  G  A    G      T S+             D   
Sbjct: 123 DQVRIIRRSTDSRGGGTQQVQATEGYPALIQVGQSVPLTTTSTGPYGRIYQDTQYRDVTR 182

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             + T ++         +   +S     VN+       V+  DT V    G  I L G+ 
Sbjct: 183 GFYVTASLSGE-----LVHVAISSQRDRVNSNRPDVIDVQSTDTRVSGRLGEWITLGGVS 237

Query: 375 KDDIQQLKE 383
           +D     ++
Sbjct: 238 EDTSSSGRD 246


>gi|325660645|ref|ZP_08149276.1| hypothetical protein HMPREF0490_00007 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325473054|gb|EGC76261.1| hypothetical protein HMPREF0490_00007 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 317

 Score = 37.3 bits (85), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 16/74 (21%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL--KEG 384
            I ++    +S   + + A     +  R              ++ G+ +         + 
Sbjct: 88  SINMKADQTISGTALNLFAPAFAIFTAR--------------MIQGVQQIQFTDTFHIDK 133

Query: 385 IPLLSKIPILGALF 398
           +P+L  IP++G +F
Sbjct: 134 VPVLGDIPVIGDMF 147


>gi|237747940|ref|ZP_04578420.1| predicted protein [Oxalobacter formigenes OXCC13]
 gi|229379302|gb|EEO29393.1| predicted protein [Oxalobacter formigenes OXCC13]
          Length = 2138

 Score = 37.3 bits (85), Expect = 5.7,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 13/103 (12%)

Query: 284 SASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           SA    G  +          TG  ++ T +YG  L  TPTV   G +      E+++   
Sbjct: 237 SARLVDGSGNPVEGVVTDPDTGVMTLET-EYG-TLTVTPTVNPDGSVTYDYSFELNDNAN 294

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            +N G    Y  +     VE+  G      G + +D+    +G
Sbjct: 295 SLNEGQSADYEYK-----VEVSDGR----GGTVSEDVHVKIDG 328


>gi|160881822|ref|YP_001560790.1| S-layer-like domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160430488|gb|ABX44051.1| S-layer domain-like protein [Clostridium phytofermentans ISDg]
          Length = 824

 Score = 37.3 bits (85), Expect = 5.7,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 15/192 (7%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           ++++FL  S   +A       A A    + DV   K K IS+   +   +++PV  +   
Sbjct: 6   LLALFLICS-MVLAGFGSAVTAKAEEAYV-DVTDSKSKVISVKAGETTHVKLPVVAKREY 63

Query: 71  VSDPTKADVVVHSPRTMYLFG-----KNVGQANVILIGHDGKQMLNLDILIERDIAH--- 122
           +++P    V V      ++ G     K      V+ I       L  DI + +D A    
Sbjct: 64  ITNPGI--VAVPESNAPFVTGSVTMTKENQTTPVLGIDAFSTTYLEFDITV-KDTASIGS 120

Query: 123 --LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             L + L     D     + ++ ++ +   V   +   +      ++   +         
Sbjct: 121 YTLNINLTFLTGDLMGGFQSMTSSLPITVRVTEEKAPIQITIDKISYNEDNAAVGNNFEL 180

Query: 181 SKKVMNLLNIAG 192
           S  V N   IA 
Sbjct: 181 SFDVRNDGEIAS 192


>gi|152974538|ref|YP_001374055.1| S-layer domain-containing protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023290|gb|ABS21060.1| S-layer domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 879

 Score = 37.3 bits (85), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           V +   A+  +   +T+ + GK  G  +VIL   DG    +  I + +
Sbjct: 673 VGNEEIAEAKI-DGKTLKVTGKKAGVTDVILT-KDGATAGHATITVTQ 718


>gi|18310559|ref|NP_562493.1| ABC transporter [Clostridium perfringens str. 13]
 gi|18145240|dbj|BAB81283.1| probable ABC transporter [Clostridium perfringens str. 13]
          Length = 317

 Score = 37.3 bits (85), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 14/88 (15%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L     +S   I + AG +  +  R         SG   ++ G +  D       +P
Sbjct: 90  SINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNIRIMQGFIPKD-------VP 137

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
           +L  IPI+G LF +  +    T + I  
Sbjct: 138 VLCSIPIIGDLFFSKTYAT--TWLVILI 163


>gi|254514458|ref|ZP_05126519.1| thiamine biosynthesis lipoprotein [gamma proteobacterium NOR5-3]
 gi|219676701|gb|EED33066.1| thiamine biosynthesis lipoprotein [gamma proteobacterium NOR5-3]
          Length = 353

 Score = 37.3 bits (85), Expect = 5.9,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 12/91 (13%)

Query: 83  SPRTMYLFGKNVGQANVILIGHDGKQMLN---------LDILIERDIAHLEMTLRRFIAD 133
            PR + L G  +G    ++    G++  +         L + IER++A +  +L  +I D
Sbjct: 24  GPRRVVLKGATMGTTWSVIYSLGGERPDSTTDTVSPDALQVQIERELAAINQSLSTYIPD 83

Query: 134 SNIRVEMVSDT---VVLHGMVRTIQDSQRAV 161
           S I      D    VVL     T+ DS  AV
Sbjct: 84  SEISRVNAGDGTGPVVLSQRFATVLDSALAV 114


>gi|313886864|ref|ZP_07820568.1| bacterial group 2 Ig-like protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923661|gb|EFR34466.1| bacterial group 2 Ig-like protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 521

 Score = 37.3 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 13/124 (10%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIG-KGKKISIGLNKVIILQVPVDVQDVLVS------D 73
            ++A L  +    +   ++S   I  + K I++ +     LQV  + +DV  +       
Sbjct: 9   ATLALLLGVASCQSNSPDVSPTNISVEPKSITMHVGDTQALQVSYEPKDVTFAISYESQS 68

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           P  A V         +     GQ ++I+  H G +     + +    A +E  L     +
Sbjct: 69  PEIATVTEQG----VVQAVKEGQTSIIV--HVGDKQATCPVSVVAKEAPVETVLTITTPE 122

Query: 134 SNIR 137
             ++
Sbjct: 123 ITVQ 126


>gi|257092647|ref|YP_003166288.1| NolW domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045171|gb|ACV34359.1| NolW domain protein [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 299

 Score = 37.3 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 11/106 (10%)

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPG 326
           +  T+  + G  A    G          + G      + S+   D G   +  P V+  G
Sbjct: 165 SMQTVQVVDGGRALIEVGRSLPIPLRQVAIGPRGAVVSESIVYRDLGQGFYAAPRVV-GG 223

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           R+ + I      P          +   +   +TV    G  + L G
Sbjct: 224 RVTVDISPRFDSPGESAYG----TVSTQLLTSTVSGRLGEWLELGG 265


>gi|239834748|ref|ZP_04683076.1| Glycoprotein X precursor [Ochrobactrum intermedium LMG 3301]
 gi|239822811|gb|EEQ94380.1| Glycoprotein X precursor [Ochrobactrum intermedium LMG 3301]
          Length = 2751

 Score = 37.3 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 103/371 (27%), Gaps = 45/371 (12%)

Query: 23   VAKLPPIKEANAAVINISD----VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
             A +P    A AA   ++      +        +   +   + V     DV ++DP   +
Sbjct: 1586 TASVPGSALAGAATPTVTAEVVFADAAGNDAAPVTGTQTYTVDVTPPTTDVAITDPEGDN 1645

Query: 79   VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            +   S  T        G   V++   DG       +  +        T      D N+ V
Sbjct: 1646 IPTASGTT------EPGST-VVVTWPDG---TTSQVTADGTTGAWTATAPAEQPDGNVTV 1695

Query: 139  EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
             +        G   T   +  + + +    S +     A  +   V+N    AG   V +
Sbjct: 1696 AVTDP----AGNPGTGSGTWTSSDTTPPDTSATTVTVGAI-AGDGVVNAAEAAGN--VAV 1748

Query: 199  KVTIAEVRRDILK---QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
             VTIA    D       +        + S    ++ A   G  ++     +V   +    
Sbjct: 1749 TVTIANPPSDAATTTVNVLVDGVPYAAVSNGDGTWTASVPGSALAGAATPTVTAEVVFAD 1808

Query: 256  FETVLHALERATAIRTLAEPTLTAISGQSASFT--SGGQHLYKTVSSSTGATSVTTHDYG 313
                  A    T   T+             + T   G      + ++  G+T V T   G
Sbjct: 1809 AAGNDAAPVTGTQTYTVD----VTPPTTDVAITDPEGDNIPTASGTTEPGSTVVVTWPDG 1864

Query: 314  VVLHFT------------PTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADT 358
                 T            P     G + + +      P  G     + D           
Sbjct: 1865 TTSQVTADGTTGAWTATAPVEQPDGNVTVAVTDPAGNPGTGSGTWTSSDTTPPDTSATTV 1924

Query: 359  TVELPSGGTIV 369
            TV   +G  +V
Sbjct: 1925 TVGAIAGDGVV 1935


>gi|330994236|ref|ZP_08318164.1| Cyclopentanol dehydrogenase [Gluconacetobacter sp. SXCC-1]
 gi|329758703|gb|EGG75219.1| Cyclopentanol dehydrogenase [Gluconacetobacter sp. SXCC-1]
          Length = 249

 Score = 36.9 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 35/154 (22%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSD-------PTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           ++G+ K   L +  +   V+V+D          A++       +++              
Sbjct: 8   ALGIGKATALLLAREGARVVVADMKAQEGHAVVAEIEAAGGEALFV-------------- 53

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ----R 159
                   L++ +E D +     ++      +I V      +   G V +   +     +
Sbjct: 54  -------PLNVTVEEDWSKAMAAIKARFGRLDIAVNNAG--IAYTGTVESTSLADWRRVQ 104

Query: 160 AVELSETFLS-QSGRNQYANSSSKKVMNLLNIAG 192
           AV L   FL  +          S  ++NL +I G
Sbjct: 105 AVNLDGVFLGTRYAVEAMKPQGSGSIINLSSIEG 138


>gi|167583574|ref|YP_001671764.1| bacterial surface protein [Enterobacteria phage phiEco32]
 gi|164375412|gb|ABY52820.1| bacterial surface protein [Enterobacteria phage phiEco32]
          Length = 1005

 Score = 36.9 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 68/193 (35%), Gaps = 20/193 (10%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL--VSDPTKADVVVHSPRTMYLF 90
           ++  ++ SDV + +G +  +      +       Q++    S+P  A V   S +   + 
Sbjct: 291 DSISLSQSDVTVSRGSQYILT---ATLSPANAPNQNITWTSSNPNIATVSGTSTQGT-IN 346

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
               G   +     +G ++    + ++     +  +   F A  +  VE   + VV    
Sbjct: 347 ALLAGFTEITATTEEGNRIAVCTVRVDLAGRTMRTSAMAFAAPVSESVETQEEEVV---- 402

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT--------I 202
             T  +S+  V  +E          Y  ++     N+ +I G  + +L  T        I
Sbjct: 403 --TPPESEETVYFAEPTSGIDTSGMYEGNNFYDYSNVNDIEGFARASLLATPLSSVTLDI 460

Query: 203 AEVRRDILKQIGF 215
                D+ ++I  
Sbjct: 461 VSASLDVGEEIVI 473


>gi|291618858|ref|YP_003521600.1| OsmY [Pantoea ananatis LMG 20103]
 gi|291153888|gb|ADD78472.1| OsmY [Pantoea ananatis LMG 20103]
          Length = 288

 Score = 36.9 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 53/192 (27%), Gaps = 26/192 (13%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
           +  +   T+M+  + ++  S +       +  A              +      +    V
Sbjct: 86  HTTKITKTLMAAMIGTALLSGSAFAEESASQKASQTADSAGAKIDSSMKKVGGFMDDSAV 145

Query: 63  PVDVQDVLVSDPTKA--DVVVHSPRTMY---------------------LFGKNVGQANV 99
               +  LV D +    D+ V + + +                      + G       +
Sbjct: 146 TAKAKAALVDDDSIKSTDISVKTHQGVVTLSGFVTSQDQAEKAVAVVKKVEGVKSVSDKL 205

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRR--FIADSNIRVEMVSDTVVLHGMVRTIQDS 157
            +     + M           + ++  L     +   N++VE     V L G V     S
Sbjct: 206 HVKDAKKQSMKGYA-GDAATTSEIKAKLLADDMVPSRNVKVETTGGVVQLSGEVANQAQS 264

Query: 158 QRAVELSETFLS 169
            RA  +++    
Sbjct: 265 DRAESIAKAIEG 276


>gi|294054030|ref|YP_003547688.1| Beta-agarase [Coraliomargarita akajimensis DSM 45221]
 gi|293613363|gb|ADE53518.1| Beta-agarase [Coraliomargarita akajimensis DSM 45221]
          Length = 1122

 Score = 36.9 bits (84), Expect = 6.6,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 64/205 (31%), Gaps = 25/205 (12%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
             +      S+ P    +    +A+   +      +G+   +     + ++   P D   
Sbjct: 638 LALQVFEFSSAIPRHLPVSDAVDADEITLYPGTTTVGEKGIL-----RPLVYVSPADA-- 690

Query: 69  VLVSDPTK------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
              +DP        A +   SP  + + G + G A +  +   G     +D+ +    + 
Sbjct: 691 ---ADPELSWTTSDASIASVSPTGL-ISGISPGIATISALNAAGIVADQIDVTVGNSASM 746

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           L+            +      ++ +  +      +Q A       L +   +      + 
Sbjct: 747 LK---LDDYGAYQNQTYTAGSSLPVRCIYDAGNGNQVAARGIRYMLRELTSSWQV--VND 801

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRR 207
            V++ L+  G        + AE++ 
Sbjct: 802 YVVDDLSAVGTQ---CGASFAEIQL 823


>gi|329910037|ref|ZP_08275212.1| inner-membrane translocator [Oxalobacteraceae bacterium IMCC9480]
 gi|327546290|gb|EGF31318.1| inner-membrane translocator [Oxalobacteraceae bacterium IMCC9480]
          Length = 305

 Score = 36.9 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 365 GGTIVLA-GLLKDDIQQLKEGIPLLSKIPILG-ALFRNS 401
           G +  +    +   +   K  +P L  IP LG ALFR  
Sbjct: 101 GASAYIGISYVGQSLHNTKSVVPFLGDIPFLGAALFRQH 139


>gi|117925486|ref|YP_866103.1| hemolysin-type calcium-binding region [Magnetococcus sp. MC-1]
 gi|117609242|gb|ABK44697.1| Hemolysin-type calcium-binding region [Magnetococcus sp. MC-1]
          Length = 15245

 Score = 36.9 bits (84), Expect = 6.8,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 112/354 (31%), Gaps = 19/354 (5%)

Query: 25    KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV---SDPTKADVVV 81
                 +++ +   + +S +  G   K++ G +    L +      V V   S    A+ V+
Sbjct: 14460 SWVEMQDTSGNGLQLSGIAEGSTAKLTTGTS-SATLTLSSVGGAVTVDSSSSLNVANTVL 14518

Query: 82    HSPRTMYLFGKN--VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
              S  +    G    V   ++ +   +        + +E D   L+         ++  ++
Sbjct: 14519 QSQGSTVTLGTGSTVKGTSLSVTTENQAITWADSVNVEVDSVTLQSQGGAISVGASSTLK 14578

Query: 140   MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
               S   V  G        Q  VE++   L   G      +SS      L ++ ++     
Sbjct: 14579 GSS-LTVNSGAGSLSLGDQANVEVTTVSLQSLGGAIALGNSSSFKGTTLGVSNQN----- 14632

Query: 200   VTIAEVRRDILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
                  +       +   +    S  G  S   ++   G  +S         + D+ + E 
Sbjct: 14633 ---GTITLGTSSSVAVSNVTLQSQGGAISVGTSSTLKGSSLSADSGTGALTLADQLTVEV 14689

Query: 259   VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
                AL+   +  T+   +    +  + S  +GG  L  + S +    ++ + +  +    
Sbjct: 14690 DTIALQSQGSTITVGSSSSLKGTTLNVSNQNGGVDLATSSSVAVTNMTLQSKNGNIS--V 14747

Query: 319   TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
                    G          +  +   +     +     AD+TV   S  T ++ G
Sbjct: 14748 ASGASLKGTTLAMTSQSGNITLASQSLVQADTLTFTAADSTVY-SSSDTQIIGG 14800


>gi|160940454|ref|ZP_02087799.1| hypothetical protein CLOBOL_05344 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437034|gb|EDP14801.1| hypothetical protein CLOBOL_05344 [Clostridium bolteae ATCC
           BAA-613]
          Length = 313

 Score = 36.9 bits (84), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 384 GIPLLSKIPILG-ALFRNSRFNREETEIFIAAT 415
            IP L  IP++G ALF           + I  T
Sbjct: 133 KIPFLGDIPLIGNALFNQDVLTYGVYVLVILVT 165


>gi|237721885|ref|ZP_04552366.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448754|gb|EEO54545.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 394

 Score = 36.9 bits (84), Expect = 7.0,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 91/267 (34%), Gaps = 30/267 (11%)

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD---IAHLE 124
            V  S+   A   V S   + + G   G A + +I        N+ +++ ++        
Sbjct: 61  KVSSSNAAVATA-VISGNEVIVTGLKYGTATLTVIDWTKNS-ANVKVVVAQEQELAVKTS 118

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS----QRAVELSETFLSQSGRNQYANSS 180
            T   F     + +   +    +     ++  +       +E++ + +  +      +S 
Sbjct: 119 STTMFFEEHKTLEIYTGNGGYSITSSNESVATAKISEDGKIEITSSIVPGTAILTVKDSH 178

Query: 181 SK------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
           +K      KV+  L +   + +T  +T   V   IL          G  +     ++  +
Sbjct: 179 NKTAEIAVKVIKRLVVDNSEDITYLITSEPVTIKILD-------GNGDYTCSLPKYSESY 231

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATA-----IRTLAEPTLTAISGQSASFTS 289
               V+E G   +   L R  F   +   ++        I+T+ EP        S  +  
Sbjct: 232 IKCTVAENGTEVIIEGLKRNYFNKAITIKDKEGQSIDIHIKTIDEP---YWENPSYRYLI 288

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVL 316
            G + Y+  S++    ++ + +  + L
Sbjct: 289 AGSYAYQYPSTAKVGEAIYSEELNISL 315


>gi|319951406|ref|ZP_08025225.1| membrane protein [Dietzia cinnamea P4]
 gi|319434925|gb|EFV90226.1| membrane protein [Dietzia cinnamea P4]
          Length = 642

 Score = 36.9 bits (84), Expect = 7.0,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 27/228 (11%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   T+  + +   +    L  +   Q  +++  +V+ +  +  + ++T +    E  R
Sbjct: 355 SGTTATVVPAVQGRTVEWGPLLGALPGQLTDTAGPRVLPVGYVGRDPELTTE----EAER 410

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             +++   Q ++   ++G ++S  A   G F+  G  FS++ +    S +T   A+    
Sbjct: 411 AGIREPVGQFTVAVGANGQAQSMIASLAGHFIPAGESFSMEELAGTVSGDTSADAV---- 466

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-------TP 320
                     TA+    A+F +G Q   +T     G       D              T 
Sbjct: 467 ---------ATALFN--AAFEAGAQDPVRTSRGVDGDAFPAGRDATASADVGFRNAQDTG 515

Query: 321 TVLSPGRIGLRIQTE-VSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
            V+     G  +           V     P   VR+A T V   +G T
Sbjct: 516 LVIDASGSGNSVTVRLWGTRDYTVRISTAPRTDVRRAPTRVVTTAGCT 563


>gi|290994578|ref|XP_002679909.1| oxidoreductase [Naegleria gruberi]
 gi|284093527|gb|EFC47165.1| oxidoreductase [Naegleria gruberi]
          Length = 633

 Score = 36.9 bits (84), Expect = 7.1,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 80/251 (31%), Gaps = 32/251 (12%)

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           +++      L   L + +       +     +V+ G    ++   + V+++     Q   
Sbjct: 138 VVVVPSTTALVAKLVKAVKSVPCNSQFAPVKIVIRGAGGNVEGGSQIVDVATLISKQELD 197

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
           +       + +++L +      V  + T    ++ +        +  G++       AA 
Sbjct: 198 DDNTIPPLQILLDLGSRLNS--VATQATTVGSQKSL-------WASAGATWLAFTRAAAT 248

Query: 234 FGGKF--------VSEGGDFSVKGVLDRFSFE-------TVLHALERATAIRTLAEPT-- 276
            G +         ++ GG  S+ GV    +F          L  +     + T+  PT  
Sbjct: 249 LGLRPYVAPDYFGITLGGSLSIGGVGGDSAFRGLCAHHVAELEVVNSDGDVLTV-TPTSN 307

Query: 277 ----LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
               +    GQ    T    +L      +     V+T D  V+L     +    +  + +
Sbjct: 308 LFKSVLGGMGQFGIMTRVRINLEPNHPFTRIYHYVST-DINVLLRAVDKIQQVNQGSVHV 366

Query: 333 QTEVSEPVIGV 343
            T  +  V G 
Sbjct: 367 NTVQTFIVPGT 377


>gi|254786261|ref|YP_003073690.1| hypothetical protein TERTU_2240 [Teredinibacter turnerae T7901]
 gi|237686902|gb|ACR14166.1| conserved repeat domain protein [Teredinibacter turnerae T7901]
          Length = 3228

 Score = 36.9 bits (84), Expect = 7.2,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 94/306 (30%), Gaps = 33/306 (10%)

Query: 15   FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
               S   S + L      +A V  I D        ++   +  + + +          +P
Sbjct: 1286 AGASQTYSYSLLAGTNGLSAGVTTIDDDLEASATSVAAITSNSVSVNLS--------GNP 1337

Query: 75   TKADVVVHSPRTMYLFGKNVGQA---NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
              +   V S  +    G   G+     + +    G       ++I+    + +       
Sbjct: 1338 QLSLSKVASATS----GLAPGETLTYTLTVTN-SGSVAATELVIIDPIADYTQFAGNTSA 1392

Query: 132  ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            A   +  + V++ V+    + T+     AV     F   +  NQ   S    + N  ++ 
Sbjct: 1393 ASGTVSFDAVNNQVIYS--LSTLSAGASAV-----FTFDARINQELASGDTHITNTASVT 1445

Query: 192  GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              + +    ++         Q+   H + GSS+ P+ +  AD     +          V 
Sbjct: 1446 ASNALATADSVTS-TVTATPQLQLSHRVAGSSAYPTATLTADASSTQIE---------VD 1495

Query: 252  DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
            +   F      L      R LA  + T +  Q  S + G   +   V +     + T   
Sbjct: 1496 NPQHFSLGQSVLIGGNIYRVLAVSSQTLLLNQPVSASDGDSVIGGIVFTIGYQHTGTAES 1555

Query: 312  YGVVLH 317
             G  L 
Sbjct: 1556 IGTTLQ 1561


>gi|204927748|ref|ZP_03218949.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323090|gb|EDZ08286.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|320085966|emb|CBY95740.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 71

 Score = 36.9 bits (84), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 14/39 (35%)

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
                  + P+   R   T V L  G  I+L GL +   
Sbjct: 2   TTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQSD 40


>gi|195172636|ref|XP_002027102.1| GL20049 [Drosophila persimilis]
 gi|194112915|gb|EDW34958.1| GL20049 [Drosophila persimilis]
          Length = 1879

 Score = 36.9 bits (84), Expect = 7.4,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 116/308 (37%), Gaps = 41/308 (13%)

Query: 21   PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV-------SD 73
            PS   +  +   + +V+++  VE     +  + L      ++ VD   + V        +
Sbjct: 959  PSHLSISVVGIGSISVVSMDRVERANSIEAIVQLFDTNDNELHVDPSYLAVYDLSEVVFN 1018

Query: 74   PTKADVVV-----HSPRTMY--LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            P   +V +       P  +   + GKN+G+  ++     G Q ++ + ++ +  A + + 
Sbjct: 1019 PNILNVRLDMQHNLRPGQIRYSITGKNIGETKIVFQSGKGSQQVSSEPIVVQVFAPIRLY 1078

Query: 127  LRR--FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
             R    +  S+I++           ++ T++  Q A   S      +     A++ + K 
Sbjct: 1079 PRDSTLLVGSSIQIYCQGGPQPNTNLIYTVEKEQVATMSSAIV---TAHRLGASNITGKC 1135

Query: 185  MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
            +    + G+D+V  + TI EVR   LK +  +  +    SG      A   G+      D
Sbjct: 1136 LMKNPVTGKDEVVSQDTI-EVRVAALKGVEIRTPLVRIRSGAV--MPATLWGQP-----D 1187

Query: 245  FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASF--TSGGQHLYKTVSS 300
            FS            VL  LE      T+++P +  I      A     SG     +  + 
Sbjct: 1188 FS----------PMVLGTLEDMQITWTVSQPGIVEIFNVLTEAGIEYQSGDLISVRVRAL 1237

Query: 301  STGATSVT 308
            + G  ++T
Sbjct: 1238 NPGKVTIT 1245


>gi|150003157|ref|YP_001297901.1| hypothetical protein BVU_0571 [Bacteroides vulgatus ATCC 8482]
 gi|319640456|ref|ZP_07995178.1| outer membrane protein [Bacteroides sp. 3_1_40A]
 gi|149931581|gb|ABR38279.1| putative outer membrane protein, probably involved in nutrient
           binding [Bacteroides vulgatus ATCC 8482]
 gi|317387943|gb|EFV68800.1| outer membrane protein [Bacteroides sp. 3_1_40A]
          Length = 1051

 Score = 36.9 bits (84), Expect = 7.5,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 66/226 (29%), Gaps = 38/226 (16%)

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
            V++P  ADV +             G    +++   G+ ++   ++++         L  
Sbjct: 24  AVANPGVADVKITQQN---------GACTGVVVDATGETVIGASVVVKGTTNGTITGLDG 74

Query: 130 FI------ADSNIRVEMVSDTVV---LHGM---VRTIQDSQRAVELSETFLSQSGRNQYA 177
                       I++  V    V     G    V    D+Q   E+  T L      +  
Sbjct: 75  DFSLSNVKKGDIIQISFVGYQTVEIPWDGQPMNVTLQDDTQTLGEVVVTALGIKREKKAL 134

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGG 236
             + ++V        +    L+    E               I  SS+GP  S      G
Sbjct: 135 GYAMQEV--------KGDALLEAR--ETNLANALTGKVSGVQIIRSSNGPGGSSKIQLRG 184

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                G +  +  V+D    +    A         +  PTL   +G
Sbjct: 185 ANSVTGLNQPLI-VVDGVPMDNFTGASNND-----IDNPTLDMGNG 224


>gi|295102325|emb|CBK99870.1| Bacterial surface proteins containing Ig-like domains
           [Faecalibacterium prausnitzii L2-6]
          Length = 319

 Score = 36.9 bits (84), Expect = 7.6,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 11/81 (13%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           S+P  A V         +  +  G   +  +  +G+ +    + +  D+  + +  R  +
Sbjct: 165 SNPEVATVDPEG----LVTAQKPGTTTITALATNGQAL-RCAVTVNSDVGKVTLNKRDLL 219

Query: 132 ADSNIRVEMVSDTVVLHGMVR 152
                 +  V     L   V 
Sbjct: 220 ------LRTVGSKEALTASVA 234


>gi|326790705|ref|YP_004308526.1| ABC transporter transmembrane protein [Clostridium lentocellum DSM
           5427]
 gi|326541469|gb|ADZ83328.1| ABC-type transporter, integral membrane subunit [Clostridium
           lentocellum DSM 5427]
          Length = 317

 Score = 36.9 bits (84), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 12/87 (13%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L+    +S   I + A  +  +  R         SG  ++  GL K +++       
Sbjct: 90  SINLQADQTISGTAINMIAAGLTIFLARNIT-----GSGNIVLTVGLAKQNVK------- 137

Query: 387 LLSKIPILGALFRNSRFNREETEIFIA 413
           +LS IPILG LF  + ++     + I 
Sbjct: 138 VLSSIPILGPLFFTNSYSTTWLVLLIL 164


>gi|326431776|gb|EGD77346.1| PRCDH1 protein [Salpingoeca sp. ATCC 50818]
          Length = 9674

 Score = 36.9 bits (84), Expect = 8.1,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 14   IFLFSSNPSVAKLPP-IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV--QDVL 70
            + L +S+ S+ +      EANA        +I      S+G    ++     +     + 
Sbjct: 6068 LALTTSDASLGQFSEYRDEANACAAIFQSADIAAHADFSLGSGSAVVTVDVTETVKSRLA 6127

Query: 71   VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            VS+   A     SP T  + G++VG A V ++  DG+ +    + +  D   +
Sbjct: 6128 VSNGNVALSKTASPPT--ITGQSVGSAQVSVVTSDGRTVGTTAVDVTTDPVGV 6178


>gi|297592892|gb|ADI47181.1| carbamoyl-phosphate synthase [Pedaria sp. CLS-2009b]
          Length = 299

 Score = 36.6 bits (83), Expect = 8.4,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 19/228 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V    +I  ++  + K + +          P K      GG  + + G+F   G      
Sbjct: 81  VYASSSIINIKERLNKMLQYDPVYKTIHELPRKVLIIGSGGLSIGQAGEFDYSG------ 134

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
               + AL+       L  P +  +  Q++   +   +    V              GV+
Sbjct: 135 -SQAIKALKEENIKTVLINPNIATV--QTSKGLADKVYFLPLVPEYVEQVIKAERPGGVL 191

Query: 316 LHFTPTVLSPGRIGLR---IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV--L 370
           L F         + L+   +       ++G     +     RK  +      G  +   L
Sbjct: 192 LTFGGQTALNCGVELQRCGVFQRYGVKILGTPIQAIIDTEDRKVFSERIAAIGEKVAPSL 251

Query: 371 AGLLKDDIQQLKEGI--PLLSKIPI-LGALFRNSRFNREETEIFIAAT 415
           A     +     + +  P++++    LG L   S F   + E+ + AT
Sbjct: 252 AAFSVQEALDAADKLGYPVMARAAFSLGGL--GSGFADNKEELKLLAT 297


>gi|254571845|ref|XP_002493032.1| Large subunit of carbamoyl phosphate synthetase [Pichia pastoris
           GS115]
 gi|238032830|emb|CAY70853.1| Large subunit of carbamoyl phosphate synthetase [Pichia pastoris
           GS115]
 gi|328352958|emb|CCA39356.1| carbamoyl-phosphate synthase large subunit [Pichia pastoris CBS
           7435]
          Length = 1143

 Score = 36.6 bits (83), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 15/112 (13%)

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           SK      GG  + + G+F   G          + AL+ A     L  P +     Q++ 
Sbjct: 61  SKVLVIGSGGLSIGQAGEFDYSG-------SQAIKALKEANKTSILINPNIAT--NQTSH 111

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
             +   +     +             G++L F       G+ GL +  ++ +
Sbjct: 112 ALADEIYYLPVTAEYITYIIEREKPDGILLTF------GGQTGLNVGVQLDK 157


>gi|256847870|ref|ZP_05553315.1| adhesion exoprotein [Lactobacillus coleohominis 101-4-CHN]
 gi|256715559|gb|EEU30535.1| adhesion exoprotein [Lactobacillus coleohominis 101-4-CHN]
          Length = 1604

 Score = 36.6 bits (83), Expect = 8.7,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 85/321 (26%), Gaps = 56/321 (17%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           K VGQ        DG         ++R + +           + + +  ++    L G  
Sbjct: 535 KKVGQTTTTFYDADGN-------FVKRSVNNDASKKFAMEGQTTVNIHYING---LTG-- 582

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG-------EDQVTLKVTIAE 204
                    ++ +E  +     N   +++    +    I G        +Q         
Sbjct: 583 -------DEIQPAEQHIGWPAGNNKGHAADTLTVTGATIPGYTYRNNDNNQ--------- 626

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV--SEGGDFSVKGVLDRFSFETVLHA 262
            + D  +            +  + +   +     +   E G      +LD  S +  +  
Sbjct: 627 -QLDDRQSDDLNKGQNTQITKGNHAVIINGKASSLQYPENGTQDYDFILDPNSQKMTVQY 685

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD----- 311
           +++    + L    L   S +   +             YK +S  T   ++         
Sbjct: 686 IDQDDNNKVLESKELHGYSDKMVDYNVQDVINGYLQKGYKLISDETHGQTLQFDQSDNVD 745

Query: 312 --YGVVL-----HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
             Y V+L       TP         L      +   +     +    R      T E  S
Sbjct: 746 QVYKVILGHKHITVTPDQPQDNGKKLPDNPNKTFSGVTATDLNKTIKRTINVAATPESKS 805

Query: 365 GGTIVLAGLLKDDIQQLKEGI 385
             T+  A + +        G+
Sbjct: 806 SQTVQTAHVTRTADVDEVTGV 826


>gi|158424459|ref|YP_001525751.1| divalent cation transporter [Azorhizobium caulinodans ORS 571]
 gi|158331348|dbj|BAF88833.1| divalent cation transporter [Azorhizobium caulinodans ORS 571]
          Length = 474

 Score = 36.6 bits (83), Expect = 8.9,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 14/154 (9%)

Query: 61  QVPVDVQDVLVSDPT-------KADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQM 109
            +P    +V V DP          D ++ + R++ +      +  V+    D     +  
Sbjct: 188 DLPETFYEVFVVDPAYHLMGAVPLDRLLRTKRSVLVTAVKTERVQVVKASEDQEEVARTF 247

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRV---EMVSDTVVLHGMVRTIQDSQRAVELSET 166
              +++    +      +     D  + V   E   D   L G+    + S      +++
Sbjct: 248 ERYNLVSAPVVDDAGRLVGVMTIDDVVDVIQEEADEDLRALAGVGSDEELSDTVAYTAKS 307

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            L     N      +  +++L  ++ E  V L V
Sbjct: 308 RLPWLVVNLGTAFLAASIIDLFAVSIEKMVALAV 341


>gi|300917283|ref|ZP_07133958.1| bacterial Ig-like domain protein [Escherichia coli MS 115-1]
 gi|300415481|gb|EFJ98791.1| bacterial Ig-like domain protein [Escherichia coli MS 115-1]
          Length = 245

 Score = 36.6 bits (83), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
            V  SDP+KA V V S  T+ + G   G   +I++ +DG  +    + + 
Sbjct: 197 RVASSDPSKATVTV-SGNTLTVTGVAAGTVEIIVMSNDGNFVAICKVTVS 245


>gi|9630478|ref|NP_046908.1| gp13 [Enterobacteria phage N15]
 gi|3192697|gb|AAC19050.1| gp13 [Enterobacteria phage N15]
          Length = 245

 Score = 36.6 bits (83), Expect = 9.0,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
            V  SDP+KA V V S  T+ + G   G   +I++ +DG  +    + + 
Sbjct: 197 RVASSDPSKATVTV-SGNTLTVTGVAAGTVEIIVMSNDGNFVAICKVTVS 245


>gi|229818340|ref|ZP_04448621.1| hypothetical protein BIFANG_03642 [Bifidobacterium angulatum DSM
            20098]
 gi|229784210|gb|EEP20324.1| hypothetical protein BIFANG_03642 [Bifidobacterium angulatum DSM
            20098]
          Length = 1523

 Score = 36.6 bits (83), Expect = 9.1,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 124/375 (33%), Gaps = 36/375 (9%)

Query: 18   SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ---VPVDVQDVLV--- 71
             S+ S+A +          + I+   +  GK +S+       L     P +  D  V   
Sbjct: 1135 GSSSSLASVTCTTNVPVTSVAITGAGVSSGK-LSVRKGASAQLAATVSPGNATDRTVSWK 1193

Query: 72   -SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
              D   A V         + G   G+A +      G +  ++++ +E        T+   
Sbjct: 1194 SGDTAVATVDKAGK----VTGVKAGKATITA--TAGGKSASVEVTVE---DEPASTVDIT 1244

Query: 131  IADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLL 188
               S + ++   +T+   G        +RA  V+L+++  S +G    A   +     L+
Sbjct: 1245 FRASGVDLKS-GETLYAVGDWGQANAWKRAGGVKLAKSGGSYTGTTTVAKGHAMA-FRLI 1302

Query: 189  NIAGEDQVTL---KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-GGKFVSEGGD 244
             +    + T    K   A   +     + +  S+   +   + + AAD   G+ +   GD
Sbjct: 1303 KVDASGKTTWDPAKDRKAVADQSKTLDVTWDGSVVSQNVSVTINAAADLKSGETLYAVGD 1362

Query: 245  FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSST 302
            +   G     +    L A    T   T++   +      +            T   +S  
Sbjct: 1363 WGQDGKTWSRASGVKLSAKSDGTYAGTVS---VKTGHAMAFRLIKVDASGRTTWDPASDR 1419

Query: 303  GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTT 359
              T+  T   GV      TV   G     +       V G   ++AG +    V    + 
Sbjct: 1420 KTTADKTKSIGVAWDV-ATVNENGVPPSTLAITGDGVVNGKLTLSAGSLAQLSVSGTSSK 1478

Query: 360  VEL--PSGGTIVLAG 372
            V++    G  + ++G
Sbjct: 1479 VDMWWSDGAAVAVSG 1493


>gi|260774010|ref|ZP_05882925.1| invasin [Vibrio metschnikovii CIP 69.14]
 gi|260610971|gb|EEX36175.1| invasin [Vibrio metschnikovii CIP 69.14]
          Length = 850

 Score = 36.6 bits (83), Expect = 9.3,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 12/106 (11%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV-------- 71
           NPS A +P +       +N+ D +I   K I I   + ++++      +  +        
Sbjct: 455 NPSDASVPSVASVACLNLNLLDFKIRDPKYIVIDTFRDLVVRYTNSTGEQSIYTRPLQWH 514

Query: 72  -SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
            SDP+   +   + R   + GK  G   V  I  DGK    +D+ +
Sbjct: 515 SSDPSILSIDRLTGR---VIGKRKGIVTVTAITPDGKLTDKIDVEV 557


>gi|117924452|ref|YP_865069.1| outer membrane adhesin like proteiin [Magnetococcus sp. MC-1]
 gi|117608208|gb|ABK43663.1| putative outer membrane adhesin like proteiin [Magnetococcus sp.
            MC-1]
          Length = 3363

 Score = 36.6 bits (83), Expect = 9.5,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 103/347 (29%), Gaps = 11/347 (3%)

Query: 28   PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
            P     AA   +          +S+          PV +  + V+D    +V V      
Sbjct: 2765 PTWSDEAATFTLQVAAANDAPTLSLPNTVTTAEDSPVSITGIAVADVDGGNVTVTVQVEN 2824

Query: 88   YLFGKNVGQANVILIGHDGKQMLNL--DILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
                 N   A V + G     +  +     +   +A L      +   ++     V+D  
Sbjct: 2825 GALTLNP-LAGVTVSGSGSDTITVVGTTTNVNTVLAGLRYQGESYYNGADTLTVSVNDGA 2883

Query: 146  VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
               G   T+  S             +G + ++ +    +         + V ++     +
Sbjct: 2884 NGGGEALTVNGSVTINITPVANAPAAGADSFSLNEDGSITITQAQMLANDVNIEDPSVSL 2943

Query: 206  RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
                +        +  +    + + AA+F G         +  G     S    ++A+  
Sbjct: 2944 SITGVFSPANGALVNNNDGSYTYTPAANFNGVDSFSYTIDNGAGGASTGSVILTVNAVND 3003

Query: 266  ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHF--TPT 321
            A  +     PTL+  +G +        +      ++ G    +++T      L     P 
Sbjct: 3004 APTLDITNVPTLSVNAGATTGIAGLSLNDIDVGETAGGKLLVTISTSATDGQLKVANAPA 3063

Query: 322  ---VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT-TVELPS 364
               V   G   L++   +S+    + +    + +    DT TV +  
Sbjct: 3064 SLLVTGSGSKSLQLTGSLSDVQYAIGSISYTAGQTAGTDTLTVAVSD 3110


>gi|293604519|ref|ZP_06686924.1| lipoprotein [Achromobacter piechaudii ATCC 43553]
 gi|292817100|gb|EFF76176.1| lipoprotein [Achromobacter piechaudii ATCC 43553]
          Length = 542

 Score = 36.6 bits (83), Expect = 9.6,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 103/328 (31%), Gaps = 55/328 (16%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
             +A L  ++  F+  S +  + V+          +I  +     L    L     N+  
Sbjct: 239 HALAVLRASIVPFLTRSGLIADAVNG-------ASSIIVTDTPEALERVALYLERENKAM 291

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
               + V   + +  +                    G   +   +++G S  +AA     
Sbjct: 292 TRRVRLVFEEITVIVKQ---------------SAAGGLDWNALYAAAGSSARYAAPAAAA 336

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +   + ++ G       + V+ AL    AI    +  +  ++ +  +        Y  
Sbjct: 337 LGASTLEATL-GRGALQGSQAVISALSTMGAIVRHNKVPVLTLNRRPVTHAIRTTFSYID 395

Query: 298 VSSST--------------GATSVTTHD--YGVVLHFTPTVLSPGRIGLRI--QTEVSEP 339
              ST               A S+T  +   G  L   P +   G+I L +     V++P
Sbjct: 396 RVQSTAVPGMTAAGANGSLPAVSITQKEETVGSFLTLVPDIQPDGQILLSVAYDNAVAQP 455

Query: 340 VIGV------NAGDMPSYRVRKADT--TVELPSGGTIVLAGLLKDDIQQLKEGI-PLLSK 390
           +  +      N   +    +    T   +EL  G  ++L+G  +   Q   + + P    
Sbjct: 456 LKTIMFGERGNQVQVQQITIDGNGTVQQIELRPGQPVILSGFDRSTDQHSGQRLAPG--- 512

Query: 391 IPILGALFRNSRFNREETEIFIAATPFL 418
           +P++  +       +E     +  T  +
Sbjct: 513 MPLI--MGGQDSAEQERETTLMLVTAQV 538


>gi|310639881|ref|YP_003944639.1| protein [Paenibacillus polymyxa SC2]
 gi|309244831|gb|ADO54398.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 778

 Score = 36.6 bits (83), Expect = 9.7,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 92/270 (34%), Gaps = 30/270 (11%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEA--NAAVINISDVEIGKGKKISIGLNKVIILQV 62
            R    +  + L SS  S A      EA  +  V++ ++V + +G   ++       +  
Sbjct: 3   NRWSGFLALVILISSFTSYAGFASAAEAVLSKIVLSSNEVTLQQGDTAALT---ATAVYS 59

Query: 63  PVDVQDVLVS------DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL- 115
                +V VS      + + A V   +     +  K  G+A VI    +  Q + + +  
Sbjct: 60  DGTTSNVTVSTDWKSDNTSIATVYNGT-----VSAKAEGEATVIATYKEKVQSVQVHVTK 114

Query: 116 -IERDIAHLEMTLRRFIADSNIRVEMV---SDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
            ++   ++++    R      I +      + T  + G      D+Q+   +    ++  
Sbjct: 115 KVKALTSNVQSLNLRSSGTGQINLTATYSDNTTAQVSGDATWTSDNQKVATVVNGLVTAQ 174

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
           G             N+  + G+  VT+ V + +V+R           +  +      +  
Sbjct: 175 GAGSA---------NIKAVYGQQTVTIAVQVEQVKRLDASTSEVSLLLKDTEKVKLTATF 225

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
            D   + V+E  ++S          +  + 
Sbjct: 226 PDGSTQDVTESAEWSSSNTAVADVLKGTIT 255


>gi|171911043|ref|ZP_02926513.1| hypothetical protein VspiD_07705 [Verrucomicrobium spinosum DSM
           4136]
          Length = 676

 Score = 36.6 bits (83), Expect = 9.7,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YKTVSSSTGA 304
             G  D  +    L AL      R +    L   SGQ A+   G + +   +   S  G 
Sbjct: 140 AGGKGDHSAQLAKLKALVGEGKGRQVDLLRLETRSGQRATVVHGEERVNGVELSGSKNGW 199

Query: 305 TSV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           T+    T + G  +   P +   G   L I   +   
Sbjct: 200 TAHANDTREIGARMELDPVLGPDGE-TLDINIAIDHD 235


>gi|210632893|ref|ZP_03297592.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279]
 gi|210159361|gb|EEA90332.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279]
          Length = 743

 Score = 36.6 bits (83), Expect = 9.9,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 17/160 (10%)

Query: 55  NKVIILQ-----VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
            +  IL      VP   +D   + P    + + +     + GK  G+    +    G  +
Sbjct: 533 GRAFILDKMLEVVPGPREDTRATAPKIQSITIPTENIRDVIGKG-GETIRGIQDETGASI 591

Query: 110 LNLD---ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
              +   + +      +   + R   +  ++V  V +     G V +IQ     V L   
Sbjct: 592 DIHEDGTVYVGGVGDSVAAAIERI--ELIVKVPEVGEEY--TGRVVSIQPFGAFVNLLPG 647

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
                  ++ A    +KV ++LN+  E    +KVT+ E+ 
Sbjct: 648 KDGLLHISRVAQGRVEKVEDVLNVGDE----VKVTVIEID 683


>gi|195978724|ref|YP_002123968.1| putative manganese-dependent inorganic pyrophosphatase
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|238689832|sp|B4U4N8|PPAC_STREM RecName: Full=Probable manganese-dependent inorganic
           pyrophosphatase; AltName: Full=Pyrophosphate
           phospho-hydrolase; Short=PPase
 gi|195975429|gb|ACG62955.1| probable manganese-dependent inorganic pyrophosphatase
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 311

 Score = 36.6 bits (83), Expect = 9.9,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 80/241 (33%), Gaps = 41/241 (17%)

Query: 62  VPVDVQDVLVSDPT-----KADVVVHSPRTMYLFGKNVGQANVILIGHDG--------KQ 108
             +D + V + DP        D    S   +    K  G ++VIL  H+         ++
Sbjct: 31  FDLDTEVVALGDPNEETAFALDYFGVSAPRVVTSAKAEGASHVILTDHNEFPQSISDIRE 90

Query: 109 MLNLDILIERDIAHLEMT----------------LRRFIADSNIRVEMVSDTVVLHGMVR 152
           +    I+    +A+ E                  + R   ++ + V      ++L G++ 
Sbjct: 91  VEVYGIVDHHRVANFETANPLYMRVEPVGSASSIVYRLFKENRVDVPKDIAGLLLSGLIS 150

Query: 153 T----------IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
                        D + AVEL+E  L+     +Y  +  K   NL + +  + + +    
Sbjct: 151 DTLLLKSPTTHASDHRVAVELAE--LAGVKLEEYGMAMLKAGTNLASKSEAELIDIDAKT 208

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
            E+  + ++                ++  A       SEG    V  + D  +  + + A
Sbjct: 209 FELNGNAVRVAQVNTVDIAEVLERKEAIEAAIKEVMASEGYSDFVLMITDIVNSNSEILA 268

Query: 263 L 263
           L
Sbjct: 269 L 269


>gi|311748787|ref|ZP_07722572.1| AraC family transcriptional regulator [Algoriphagus sp. PR1]
 gi|126577324|gb|EAZ81572.1| AraC family transcriptional regulator [Algoriphagus sp. PR1]
          Length = 9449

 Score = 36.6 bits (83), Expect = 10.0,   Method: Composition-based stats.
 Identities = 42/342 (12%), Positives = 103/342 (30%), Gaps = 30/342 (8%)

Query: 33   NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
             + +++ +D++ G    ++         Q   D   V V     AD+ +     + ++ +
Sbjct: 6855 QSYLVSQADLDAGSIVNVATVTGLDPTNQTVQDDDSVTVPVVQSADIQITKTSDISVYTQ 6914

Query: 93   NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
                AN  L   +   +   D+ +   +  L   +          V  ++ +  +     
Sbjct: 6915 ANQTANFTLTITNTGNVTLTDVTVTDPLTGLNNNIGVLAPG---SVTNLATSYTIS---- 6967

Query: 153  TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
              Q    A     T  +     +    S    + L+++   D         E+ +   K 
Sbjct: 6968 --QADVNAGSFVNTATAIGTDPKSIIVSDSDDIRLISVRRPD--------IELTKTPDKA 7017

Query: 213  IGFQ------HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
                      +++  +++G       +      + G         + ++  TV  A +  
Sbjct: 7018 TFSNAGELITYTLVVTNAGNVTLEKVNVTDPLTNLGQGIGSLNPAETYTLTTVYTATQND 7077

Query: 267  TAIRTLAEPTLTAIS---GQSA---SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
                 +      +      Q     +  S        +S S  A+  T    G  + ++ 
Sbjct: 7078 VDTGIIHNTATASGVDPKNQKVNDYASASVTSIQTPGISLSKTASPTTYSTSGDQISYSL 7137

Query: 321  TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
             V + G + L     VS+    V+   + +    +  T V +
Sbjct: 7138 VVTNTGNVTLE-NVTVSDAGTTVSNPAVGTLSPGQTATVVAV 7178


>gi|220928834|ref|YP_002505743.1| inner-membrane translocator [Clostridium cellulolyticum H10]
 gi|219999162|gb|ACL75763.1| inner-membrane translocator [Clostridium cellulolyticum H10]
          Length = 313

 Score = 36.6 bits (83), Expect = 10.0,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 369 VLAGLLKDDIQQLKE--GIPLLSKIPILGALFRNSR 402
           ++   L D ++       IPLL  IPILG+ F +  
Sbjct: 113 LIGQALSDSVRNSFTPVKIPLLGDIPILGSAFFHQN 148


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.308    0.136    0.344 

Lambda     K      H
   0.267   0.0416    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,297,340,560
Number of Sequences: 14124377
Number of extensions: 284880405
Number of successful extensions: 926776
Number of sequences better than 10.0: 4446
Number of HSP's better than 10.0 without gapping: 6297
Number of HSP's successfully gapped in prelim test: 1381
Number of HSP's that attempted gapping in prelim test: 905019
Number of HSP's gapped (non-prelim): 10193
length of query: 474
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 331
effective length of database: 2,823,007,719
effective search space: 934415554989
effective search space used: 934415554989
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 83 (36.6 bits)