BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (474 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040404|gb|ACT57200.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 474 Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/474 (100%), Positives = 474/474 (100%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL Sbjct: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI Sbjct: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS Sbjct: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS Sbjct: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS Sbjct: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV Sbjct: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK Sbjct: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK Sbjct: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 >gi|315121891|ref|YP_004062380.1| putative pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495293|gb|ADR51892.1| putative pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 471 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/474 (69%), Positives = 390/474 (82%), Gaps = 3/474 (0%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M+ Q+T F + IF+ SSN +A+ + NA+ I+I D IG KKI+IGL KV+IL Sbjct: 1 MKNFQKTLFMLFVIFISSSNFLLAQSKLVDAKNASTIHIGDSAIGTSKKINIGLGKVVIL 60 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P VQDVLVSDPTKADVVVHS +T+Y+FGK+VGQANVILIGHD KQ+LN+DI IERDI Sbjct: 61 HLPSRVQDVLVSDPTKADVVVHSSKTVYIFGKSVGQANVILIGHDEKQLLNIDIFIERDI 120 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 +LEMT RRF++ SNI VEM+SD +VLHG VRTIQDSQ AVELS FLS N Y +S Sbjct: 121 RNLEMTFRRFLSGSNIHVEMLSDNLVLHGEVRTIQDSQHAVELSNMFLSNERNNLYKTAS 180 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 KV+NLLNI EDQVTLKVTIAEVRRD+LKQIGFQH+I SS GPSK DF G Sbjct: 181 GSKVINLLNIGAEDQVTLKVTIAEVRRDVLKQIGFQHTI--SSGGPSKGKRIDFDGSLGG 238 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 +G DF++ +LDRF+F++VL+ALERATAIRTLAEPTLTAISGQ+A+F SGG LY++V + Sbjct: 239 QGADFAMTTILDRFTFKSVLNALERATAIRTLAEPTLTAISGQNATFRSGGTRLYRSVGA 298 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + G +++T HDYGVVL FTPTVLSPGRIGLRI+TEVSEPV+GV+ P YR+RKADTTV Sbjct: 299 N-GTSTITPHDYGVVLTFTPTVLSPGRIGLRIETEVSEPVLGVSTTGEPEYRMRKADTTV 357 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ELPSGGTIVLAGLLKDDIQQ + G+PLLSKIPILGALFR++ F+REETEIFI+ATPFLVK Sbjct: 358 ELPSGGTIVLAGLLKDDIQQKRGGVPLLSKIPILGALFRSNSFSREETEIFISATPFLVK 417 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 PVAM +LSRPDD+Y +E+DAKAF FNRVNKIYGPKEA++ GQNYKGAIGFIYK Sbjct: 418 PVAMNELSRPDDNYDIENDAKAFLFNRVNKIYGPKEAAQGNGQNYKGAIGFIYK 471 >gi|241207157|ref|YP_002978253.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861047|gb|ACS58714.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 499 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 231/476 (48%), Positives = 315/476 (66%), Gaps = 28/476 (5%) Query: 22 SVAKLPPIKEANA---AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 S A L EA A +++ IS +++ +GLNK +++ +P D D+LVSDPT AD Sbjct: 29 SFAPLFGAGEARADSDSLVRISQTGSNAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMAD 88 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE+ LRRFI DSNI V Sbjct: 89 AVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNLRRFIPDSNINV 148 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFL---SQSGRNQYANSS--------------S 181 E+VSD +VL G VRT QD+ +A +L++ FL + R + A+ + S Sbjct: 149 EIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDSSVALFAEGRQS 208 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAADFGGKF 238 +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + ++ SS S +AD Sbjct: 209 SQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQLGSPSADSAAST 268 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 V G K + ++ T L+ALE+A ++TLAEPTLTAISGQ+A+F SGGQ LY T Sbjct: 269 VGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATFNSGGQQLYST- 327 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 + S G +V +YG+ L F P VLS GRI L+I+T VSEPV G +G+ +Y+ R A+T Sbjct: 328 TDSDGNVTVVPFNYGISLAFKPVVLSSGRISLQIKTNVSEPVAG--SGNA-TYQRRSAET 384 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+ETE+ I ATP+L Sbjct: 385 SVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATPYL 444 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 V+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G+IGFIYK Sbjct: 445 VRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGFIYK 499 >gi|116249981|ref|YP_765819.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254629|emb|CAK05703.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 501 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 231/476 (48%), Positives = 315/476 (66%), Gaps = 28/476 (5%) Query: 22 SVAKLPPIKEANA---AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 S A L EA A +++ IS +++ +GLNK +++ +P D D+LVSDPT AD Sbjct: 31 SFATLFAAGEARADSDSLVRISQTGSNAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMAD 90 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE+ LRRFI DSNI V Sbjct: 91 AVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNLRRFIRDSNINV 150 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFL---SQSGRNQYANSS--------------S 181 E+VSD +VL G VRT QD+ +A +L++ FL + R + A+ + S Sbjct: 151 EIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDSSVALFAEGRQS 210 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAADFGGKF 238 +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + ++ SS S +AD Sbjct: 211 SQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQLGSPSADSATAT 270 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 V G K + ++ T L+ALE+A ++TLAEPTLTAISGQ+A+F SGGQ LY T Sbjct: 271 VGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATFNSGGQQLYST- 329 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 + S G +V +YG+ L F P VLS GRI L+I+T VSEPV G +G+ +Y+ R A+T Sbjct: 330 TDSDGNVTVVPFNYGINLAFKPVVLSSGRISLQIKTNVSEPVAG--SGNA-TYQRRSAET 386 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+ETE+ I ATP+L Sbjct: 387 SVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATPYL 446 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 V+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G+IGFIYK Sbjct: 447 VRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGFIYK 501 >gi|86355864|ref|YP_467756.1| pilus assembly secretion protein [Rhizobium etli CFN 42] gi|86279966|gb|ABC89029.1| pilus assembly secretion protein [Rhizobium etli CFN 42] Length = 498 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 227/473 (47%), Positives = 312/473 (65%), Gaps = 37/473 (7%) Query: 29 IKEANAA--VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86 + EA AA ++ IS +++ +GLNK +++ +P D D+LVSDPT AD V + R Sbjct: 36 VNEARAAESLVRISQTGPDAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMADAVTRTSRR 95 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 +YLFGK VGQ N+ + G G++++NLDI IERD++ LE LRRFI DSNI+VE+VSD +V Sbjct: 96 IYLFGKKVGQTNIFVFGAGGQEVVNLDIEIERDVSGLETNLRRFIPDSNIKVEIVSDNIV 155 Query: 147 LHGMVRTIQDSQRAVELSETFL---SQSGRNQYANSS--------------SKKVMNLLN 189 L G VRT QD+ +A +L++ FL + R + A+ + + +V+NLL Sbjct: 156 LTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDSSVALFAEGRQTSQVVNLLQ 215 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFGGKFVSE 241 I GEDQVTLKVTI EVRR++LKQ+GF + ++ SS S + S A GG + Sbjct: 216 IQGEDQVTLKVTITEVRREVLKQLGFDNLVSNSSGMTVAQLGSPNADSATATVGGGLAA- 274 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 K + ++ T L+ALE+A +RTLAEPTLTAISGQ+A+F SGGQ LY T + + Sbjct: 275 ----LFKSSIGKYDISTYLNALEQAKVVRTLAEPTLTAISGQAATFNSGGQQLYST-TDN 329 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 G +V +YG+ L F P VLS GRI L I+T VSEPV G +G+ +Y+ R A+T+VE Sbjct: 330 NGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAG--SGNA-TYQRRSAETSVE 386 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 LPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+ETE+ I ATP+LV+P Sbjct: 387 LPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATPYLVRP 446 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 VA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G+IGFIYK Sbjct: 447 VARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGFIYK 498 >gi|209551759|ref|YP_002283676.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537515|gb|ACI57450.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 499 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 220/447 (49%), Positives = 301/447 (67%), Gaps = 25/447 (5%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 +++ +GLNK +++ +P D D+LVSDPT AD V + R +YLFGK VGQ N+ + G G+ Sbjct: 58 RRLKLGLNKAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQ 117 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 +++NLDI IERD++ LE+ L RFI DSNI VE+VSD +VL G VRT QD+ +A +L++ F Sbjct: 118 EIVNLDIEIERDVSGLEVNLHRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVF 177 Query: 168 L---SQSGRNQYANSS--------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 L + R + A+ + + +V+NLL I GEDQVTLKVTIAEVRR++L Sbjct: 178 LKGGEATTRTETASGTGGDSSVALFAEGRQTSQVVNLLQIEGEDQVTLKVTIAEVRREVL 237 Query: 211 KQIGFQHSITGSSS---GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 KQ+GF + ++ SS S +AD V G K + ++ T L+ALE+A Sbjct: 238 KQLGFDNLVSNSSGMTVAQLGSPSADSATSVVGGGLAALFKSSIGKYDISTYLNALEQAK 297 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 ++TLAEPTLTAISGQ+A+F SGGQ LY T + S G +V +YG+ L F P VLS GR Sbjct: 298 VVKTLAEPTLTAISGQAATFNSGGQQLYST-TDSNGNVTVVPFNYGINLAFKPVVLSSGR 356 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I L+I+T VSEPV G + +Y+ R A+T+VELPSGG+I LAGL++D++ Q G P Sbjct: 357 ISLQIKTNVSEPVAGSSGA---TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPG 413 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 +SKIP+LG LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NR Sbjct: 414 VSKIPLLGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNR 473 Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIYK 474 VNK+YG +EA + Q + G+IGFIYK Sbjct: 474 VNKVYGRREAPVADAQ-FHGSIGFIYK 499 >gi|190889881|ref|YP_001976423.1| pilus assembly secretion protein [Rhizobium etli CIAT 652] gi|190695160|gb|ACE89245.1| pilus assembly secretion protein [Rhizobium etli CIAT 652] gi|327194694|gb|EGE61540.1| pilus assembly secretion protein [Rhizobium etli CNPAF512] Length = 499 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 221/447 (49%), Positives = 301/447 (67%), Gaps = 25/447 (5%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 +++ +GLNK +++ +P D D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G+ Sbjct: 58 RRLKLGLNKAVVVDLPEDAHDILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQ 117 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 +++NLDI IERD++ LE LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ F Sbjct: 118 EIINLDIEIERDVSGLEANLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVF 177 Query: 168 L---SQSGRNQYANSS--------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 L + R + A+ + + +V+NLL I GEDQVTLKVTIAEVRR++L Sbjct: 178 LKGGEATTRTETASGTGGDSAVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVL 237 Query: 211 KQIGFQHSITGSSSGPSKSF---AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 KQ+GF + I+ SS +AD V G K + ++ T L+ALE+A Sbjct: 238 KQLGFDNLISNSSGMTVAQLGTPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAK 297 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +RTLAEPTLTAISGQ+A+F SGGQ LY T + + G +V +YG+ L F P VLS GR Sbjct: 298 VVRTLAEPTLTAISGQAATFNSGGQQLYST-TDNDGNVTVVPFNYGINLAFKPVVLSSGR 356 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I L I+T VSEPV G +G+ +Y+ R A+T+VELPSGG+I LAGL++D++ Q G P Sbjct: 357 ISLEIKTNVSEPVAG--SGNA-TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPG 413 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 +SKIP+LG LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NR Sbjct: 414 VSKIPLLGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNR 473 Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIYK 474 VNK+YG +EA + Q + G+IGFIYK Sbjct: 474 VNKVYGRREAPVADAQ-FHGSIGFIYK 499 >gi|222084469|ref|YP_002542998.1| pilus assembly secretion protein [Agrobacterium radiobacter K84] gi|221721917|gb|ACM25073.1| pilus assembly secretion protein [Agrobacterium radiobacter K84] Length = 505 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 216/448 (48%), Positives = 300/448 (66%), Gaps = 26/448 (5%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + + +GLNK +++ +P D D+LVSDP AD V + R +YLFGK VGQ N+ + G +G+ Sbjct: 63 RTLKLGLNKALVVDLPADAHDILVSDPKMADAVTRTSRRIYLFGKTVGQTNIFVFGANGQ 122 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 ++++LD+ IERDI+ L+ L+RFI DS+I VE+VSD +VL G VRT QDS RA +L+ F Sbjct: 123 EIVSLDLQIERDISGLQANLKRFIPDSDINVEIVSDNIVLTGSVRTPQDSSRAQQLAGAF 182 Query: 168 L---SQSGRNQYANSS--------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 L + R + A+ + + +++NLL I GEDQVTLKVT+AEV+R +L Sbjct: 183 LKGGEATTRTETASGTGGDSSVALFAEGRQTSQIVNLLQIEGEDQVTLKVTVAEVKRSVL 242 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV----KGVLDRFSFETVLHALERA 266 KQIGF + ++ +SSG + + + + G+ + K L +++ + L+A+E+A Sbjct: 243 KQIGFDNLVS-NSSGLTVAQLGNISSDSTAATGNGGLSALFKTALGKYNVSSYLNAMEQA 301 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 A+RTLAEPTLTAISGQ+A+F SGGQ LY + S G ++T + YG+ L FTP VLS G Sbjct: 302 GAVRTLAEPTLTAISGQAATFNSGGQTLYSVIDSD-GNVTITPYTYGISLAFTPVVLSAG 360 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 RI L +QT+VSEP A +Y R ADT+VELPSGG+I LAGLL D++QQ G P Sbjct: 361 RISLHVQTQVSEPTGTTGAA---TYNRRAADTSVELPSGGSIALAGLLSDNVQQSTTGTP 417 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 SKIPILGALFR F R+E+E+ I ATP+LV+PVA ++RPDD++S +DA FF N Sbjct: 418 GASKIPILGALFRQKTFQRDESELVIIATPYLVRPVARNQIARPDDNFSPTNDAGVFFMN 477 Query: 447 RVNKIYGPKEASEVEGQNYKGAIGFIYK 474 RVNKIYG K+A V ++ G +GFIYK Sbjct: 478 RVNKIYGRKDAPPVADADFHGTVGFIYK 505 >gi|218516388|ref|ZP_03513228.1| pilus assembly secretion protein [Rhizobium etli 8C-3] Length = 436 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 219/441 (49%), Positives = 296/441 (67%), Gaps = 25/441 (5%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 +NK +++ +P D D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G++++NLD Sbjct: 1 MNKAVVVDLPEDAHDILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLD 60 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL---SQ 170 I IERD++ LE LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL Sbjct: 61 IEIERDVSGLEANLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEA 120 Query: 171 SGRNQYANSS--------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + R + A+ + + +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF Sbjct: 121 TTRTETASGTGGDSAVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFD 180 Query: 217 HSITGSSSGPSKSF---AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 + I+ SS +AD V G K + ++ T L+ALE+A +RTLA Sbjct: 181 NLISNSSGMTVAQLGTPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLA 240 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 EPTLTAISGQ+A+F SGGQ LY T + + G +V +YG+ L F P VLS GRI L I+ Sbjct: 241 EPTLTAISGQAATFNSGGQQLYST-TDNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIK 299 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 T VSEPV G +G+ +Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+ Sbjct: 300 TNVSEPVAG--SGNA-TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPL 356 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG Sbjct: 357 LGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYG 416 Query: 454 PKEASEVEGQNYKGAIGFIYK 474 +EA + Q + G+IGFIYK Sbjct: 417 RREAPVADAQ-FHGSIGFIYK 436 >gi|218680971|ref|ZP_03528868.1| putative pilus assembly protein [Rhizobium etli CIAT 894] Length = 434 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 218/438 (49%), Positives = 297/438 (67%), Gaps = 25/438 (5%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 +GLNK +++ +P D D+LVSDPT AD V + R +YLFGK VGQ N+ + G G++++N Sbjct: 2 LGLNKAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVN 61 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--- 168 LDI IERD++ LE+ LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL Sbjct: 62 LDIEIERDVSGLEVNLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGG 121 Query: 169 SQSGRNQYANSS--------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + R + A+ + + +V+NLL I GEDQVTLKVTIAEVRR++LKQ+G Sbjct: 122 EATTRTETASGTGGDSSVALFAEGRQASQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLG 181 Query: 215 FQHSITGSSS---GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 F + ++ SS S +AD V G K + ++ T L+ALE+A ++T Sbjct: 182 FDNLVSNSSGMTVAQLGSPSADSATSTVGGGLAALFKSTIGKYDISTYLNALEQAKVVKT 241 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEPTLTAISGQ+A+F SGGQ LY T + S G +VT +YG+ L F P VLS GRI L+ Sbjct: 242 LAEPTLTAISGQAATFNSGGQQLYST-TDSDGNVTVTPFNYGINLAFKPVVLSSGRISLQ 300 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 I+T VSEPV G +G+ +Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKI Sbjct: 301 IKTNVSEPVAG--SGNA-TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKI 357 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P+LG LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+ Sbjct: 358 PLLGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKV 417 Query: 452 YGPKEASEVEGQNYKGAI 469 YG +EA + Q + G+I Sbjct: 418 YGRREAPVADAQ-FHGSI 434 >gi|325291659|ref|YP_004277523.1| component of type IV pilus [Agrobacterium sp. H13-3] gi|325059512|gb|ADY63203.1| component of type IV pilus [Agrobacterium sp. H13-3] Length = 527 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 222/499 (44%), Positives = 322/499 (64%), Gaps = 51/499 (10%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 +P+ ++ + +A+++ I++ G K++ +GLNK +++ +P D D+LV+DP+ AD Sbjct: 36 SPAFLRISEAEAQSASIVRITESGSGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADA 95 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + + +YLFGK VGQ N+ + G G+++++LD+ +ERDI+ LE +RRFI +S+I+VE Sbjct: 96 VTRTSKRIYLFGKTVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVE 155 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFL----------SQSGRNQYA-------NSSSK 182 +VSD +VL G VRT QDS RAV+L+E FL S +G N N + Sbjct: 156 IVSDNIVLTGSVRTPQDSARAVQLAEAFLKGGEATTRNISLTGGNNGGDAAIFAENRQTS 215 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------SGPSKSFAADFG 235 +++N+L I GEDQVTLKVT+AEV R +LKQ+GF SI+ S+ S PS A G Sbjct: 216 QIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGSISSSTSNNGFEFSNPSNLGNAISG 275 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 ++ G S G L+ F + L+A+E+A +RTLAEP+LTAISG+ A F GG Sbjct: 276 ASRIASGAIGS--GSLN---FASYLNAMEQAGVVRTLAEPSLTAISGEQAKFYVGGDFRL 330 Query: 296 K-----TVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VI 341 T+ TG ++T T DYG+ L+F P VLSPGRI L+I+T VSEP V+ Sbjct: 331 PAEQEVTIDKDTGQPTITRTTNTVDYGITLNFRPVVLSPGRISLKIETNVSEPTYEGNVV 390 Query: 342 GVNAG-DMP-----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 NAG +P S R R+ TTVELPSGG+IV+AGL++D+I+Q G+P +SK+PI G Sbjct: 391 TGNAGRTIPGSTYMSIRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGISKVPIFG 450 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 LFR+ F R ETE+ I ATP+LV+PVA ++RPDD+++ E+DA +F NRVNK+YG K Sbjct: 451 TLFRSKDFIRNETELVIIATPYLVRPVARNQIARPDDNFNPENDAAMYFMNRVNKVYGRK 510 Query: 456 EASEVEGQNYKGAIGFIYK 474 + +V+ Y+G++GFIYK Sbjct: 511 D--QVQAAPYQGSVGFIYK 527 >gi|15887573|ref|NP_353254.1| component of type IV pilus [Agrobacterium tumefaciens str. C58] gi|15155110|gb|AAK86039.1| component of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 527 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 217/496 (43%), Positives = 317/496 (63%), Gaps = 45/496 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 +P + + +A+++ I++ G K++ +GLNK +++ +P D D+LV+DP+ AD Sbjct: 36 SPDFLRTSEAEAQSASIVRITESGTGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADA 95 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + R +YLFGK VGQ N+ + G G+++++LD+ +ERDI+ LE +RRFI +S+I+VE Sbjct: 96 VTRTSRRIYLFGKMVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVE 155 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFL----------SQSGRNQYANSS-------SK 182 +VSD +VL G VRT QDS RAV+L++ FL S +G N +++ Sbjct: 156 IVSDNIVLTGSVRTPQDSARAVQLADAFLKGGEATTRNISLTGGNNGGDAAIFAERRQVS 215 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA--ADFGGKFVS 240 +++N+L I GEDQVTLKVT+AEV R +LKQ+GF SI+ S+SG FA ++ G Sbjct: 216 QIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGSISSSTSGNGFEFANPSNLGNAI-- 273 Query: 241 EGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297 +G G + S F + L+A+E+A +RTLAEP+LTAISG+ A F GG Sbjct: 274 DGASRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSLTAISGEQAKFYVGGDFRLAAE 333 Query: 298 ----VSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGV 343 + TG ++T T DYG+ L+F P VLSPGRI L+I+T VSEP V G Sbjct: 334 QEVDIDKETGRPTITRTTNTVDYGITLNFKPVVLSPGRISLKIETNVSEPTYEGNVVTGN 393 Query: 344 NAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 +P S R R+ TTVELPSGG+IV+AGL++D+++Q G+P +SKIPI G LF Sbjct: 394 GGRTIPGSTYMSVRKRETSTTVELPSGGSIVIAGLVQDNVRQAMSGLPGMSKIPIFGTLF 453 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 R+ F R ETE+ I ATP+LV+PVA ++RPDD+++ E+DA +F NRVNK+YG K+ Sbjct: 454 RSKEFLRNETELVIIATPYLVRPVARNQIARPDDNFNPENDAAMYFMNRVNKVYGRKD-- 511 Query: 459 EVEGQNYKGAIGFIYK 474 +V+ Y+G++GFIYK Sbjct: 512 QVQAAPYQGSVGFIYK 527 >gi|222147182|ref|YP_002548139.1| component of type IV pilus [Agrobacterium vitis S4] gi|221734172|gb|ACM35135.1| component of type IV pilus [Agrobacterium vitis S4] Length = 525 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 225/522 (43%), Positives = 315/522 (60%), Gaps = 51/522 (9%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPP----IKEANA------AVINISDVEIGKGKKI 50 MR F MM S S++ LP + A+A +++ I+ G + + Sbjct: 7 MRLSSARLFRMMITGSLSLGLSISGLPGENMLVWRADALAAGAQSLVRIAQTGPGVRRDL 66 Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 +GLNK I++ +P D D+LV+DP AD V + R +YLFGK VGQ N+ + G DG++++ Sbjct: 67 KLGLNKAIVVDLPEDAHDILVADPELADAVTRTSRRIYLFGKKVGQTNIFIFGADGREIV 126 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL-- 168 +LD+ IERDI L+ L RFI +SNI+VE++SD VVL G VRT QDS RAV L++ FL Sbjct: 127 SLDLQIERDIEGLQTNLSRFIPESNIKVEIISDNVVLSGTVRTPQDSSRAVSLAKAFLQG 186 Query: 169 ---SQSGRNQYANSS-------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + G +NSS + +++N+L I GEDQVTLKVT+AEV R +LKQ Sbjct: 187 GEATTRGETATSNSSGDGAVAIYAEDRQTSQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQ 246 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 +G S T +SG S + ++ G V GG ++ F ++A+E+A +RTL Sbjct: 247 LGVSASATDGTSGISYANPSNLGNS-VDVGGTATISKTFGSFGISAYVNAMEQAGVMRTL 305 Query: 273 AEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSV----TTHDYGVVLHFTPTVL 323 AEP+LTAISG+ A F GG++ + S+TG +V +T DYG+ L+F P VL Sbjct: 306 AEPSLTAISGEQAKFYVGGEYRLAAGQEISTDSTTGQKTVSRTTSTVDYGIQLNFRPVVL 365 Query: 324 SPGRIGLRIQTEVSEP------VIGVNAGDMP-----SYRVRKADTTVELPSGGTIVLAG 372 SPGRI L I+T VSEP V G + +P S R R+A TTVELPSGG+IV+AG Sbjct: 366 SPGRISLAIETNVSEPTYEGSVVEGNSDSSIPGSTYLSIRKREASTTVELPSGGSIVIAG 425 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L++D+++Q G+P +SKIPI G LFR+ F R ETE+ I ATP+LV+PV L+RPDD Sbjct: 426 LVQDNVRQAMSGLPGISKIPIFGTLFRSKDFVRNETELVIIATPYLVRPVTRNALARPDD 485 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +++ D +F NRVNK+YG KEA+ Y G +G+IYK Sbjct: 486 NFNPAGDGAMYFLNRVNKVYGRKEAT--ANGAYHGTVGYIYK 525 >gi|15963894|ref|NP_384247.1| putative pilus assembly transmembrane protein [Sinorhizobium meliloti 1021] gi|307315791|ref|ZP_07595305.1| type II and III secretion system protein [Sinorhizobium meliloti BL225C] gi|307320426|ref|ZP_07599843.1| type II and III secretion system protein [Sinorhizobium meliloti AK83] gi|15073069|emb|CAC41528.1| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|306893992|gb|EFN24761.1| type II and III secretion system protein [Sinorhizobium meliloti AK83] gi|306898559|gb|EFN29232.1| type II and III secretion system protein [Sinorhizobium meliloti BL225C] Length = 511 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 218/498 (43%), Positives = 315/498 (63%), Gaps = 37/498 (7%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 +S L S ++ LP + A+++V+ I D G K I++GLNK +++ +P D D+LV Sbjct: 16 LSFCLTFSGMALPTLPAAEAASSSVVRIVDSGPGARKTINLGLNKAVVVDLPSDAHDILV 75 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 +DP+ AD + + R +YLFGK+VGQ N+ + G G+++++L++ +ERD+A LE LRRFI Sbjct: 76 ADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVAGLEANLRRFI 135 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL----------SQSGRNQYA---- 177 D++I VE++SD VVL G VRT DS RAV+L+ FL + G N A Sbjct: 136 PDADINVEIISDNVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQGNNGDADIFA 195 Query: 178 -NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 + + +++NLL I G+DQVTLKVT+AEV R +LKQ+GF ++ SG S A+ G Sbjct: 196 EDRQNSQIVNLLTIEGDDQVTLKVTVAEVSRQVLKQLGFNGRVSDGESGISFRNPANL-G 254 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 ++ G + +KG + + + ++A+E+A +RTLAEP+LTAISGQ A F GG+ Sbjct: 255 DAIAVGTNALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAISGQEAKFYVGGEFRLA 314 Query: 297 TVSS-----STGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VI 341 V TG T+V +YG+ L+F P VL PGRI L+I+T+VSEP V Sbjct: 315 GVQEVSTDDETGQTTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVSEPTYEGSVVT 374 Query: 342 GVNAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 G + +P R R+A T+VELPSGG+IV+AGL++D+I+Q G+P SKIPILG Sbjct: 375 GNSMTAIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLPGASKIPILGT 434 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 LFR+ F R ETE+ I ATP+LV+PVA +SRPDD+++ +D ++FF RVN+IYG E Sbjct: 435 LFRSKDFQRSETELVIIATPYLVRPVARSAISRPDDNFNPANDLESFFLGRVNRIYGRPE 494 Query: 457 ASEVEGQNYKGAIGFIYK 474 A G+ Y G +GFIYK Sbjct: 495 AQPPAGR-YHGNVGFIYK 511 >gi|241518288|ref|YP_002978916.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862701|gb|ACS60365.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 512 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 206/463 (44%), Positives = 290/463 (62%), Gaps = 31/463 (6%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 VI++++ + + +SIGLNK +I+++P D D++VSDP +D +V + RT++LFGK VG Sbjct: 57 VISVTETGVNVTRHVSIGLNKTLIVELPQDAHDIVVSDPGVSDAIVRATRTIFLFGKKVG 116 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 Q N+ ++ + + ++N+DI +ERDIA LE LRR I D+ I+VE++SD +VL G VR+ Q Sbjct: 117 QTNIFILDANKRPIVNIDIAVERDIAGLETDLRRLIPDAAIKVEIISDNIVLTGTVRSAQ 176 Query: 156 DSQRAVELSETFLSQSGRNQYA-----------------NSSSKKVMNLLNIAGEDQVTL 198 DS +A +L+ F+ + K++NLL IA +DQV L Sbjct: 177 DSAQAADLASAFVKGGEATTRTQSASSGGSQGSVALVAEDRQESKIINLLRIAADDQVML 236 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSV--KGVL 251 K+TIAEV+R+ILKQ+GF + + + S A G + GG S G Sbjct: 237 KMTIAEVKREILKQLGFDNELKNAGG----STIAQLGTASTDATTATSGGGLSALFSGSF 292 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + T L+ALE+A +RTLAEPTLTA+SGQSASF +GG+ LY + G T+ T + Sbjct: 293 GKHGLSTTLNALEQAKVVRTLAEPTLTAVSGQSASFQAGGEVLYSN-TDRDGNTTQTPYS 351 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 YG+ L F P VL+ GRI L+I TEVSEPV + +G P+Y R TTVELPSGG+I LA Sbjct: 352 YGISLSFKPIVLTSGRISLQISTEVSEPVTSI-SGSSPTYGKRSTSTTVELPSGGSIALA 410 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL++D+ + G P+L+KIP GALFR + F R ETE+ I ATP+LV+PVA +DL+RPD Sbjct: 411 GLIRDNFNRTSNGTPVLNKIPGFGALFRQTSFERNETELVIIATPYLVRPVAAKDLNRPD 470 Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 D+ S DDA +R+NK+YG + E Q Y G +GFIYK Sbjct: 471 DNLSPADDASQGLLDRINKLYGNGKTLEPTAQ-YHGTVGFIYK 512 >gi|163757627|ref|ZP_02164716.1| putative pilus assembly transmembrane protein [Hoeflea phototrophica DFL-43] gi|162285129|gb|EDQ35411.1| putative pilus assembly transmembrane protein [Hoeflea phototrophica DFL-43] Length = 496 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 219/473 (46%), Positives = 300/473 (63%), Gaps = 25/473 (5%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 +P+ +L +A+ +I I G K++ +GLNK I++ +P D D+LV+DP AD Sbjct: 31 DPTTGRLATPAQASQNIIKIKKSGPGVSKRVKLGLNKAIVVDLPTDAHDILVADPALADA 90 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + R +YLFGK VGQ N+ + G +G++++ +++ IERD+A LE+ L RF+ DSNI+VE Sbjct: 91 VTRTSRRLYLFGKTVGQTNIFVFGPNGEEIIAIELEIERDVAGLEVHLARFLPDSNIQVE 150 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFL------------SQSGRNQYANSSSK---KV 184 ++SD +VL G VRT QD+ +A L+E FL + G + N+ + K+ Sbjct: 151 IISDNIVLTGSVRTPQDASQAARLAEIFLTGGEATTRVTTATSEGGDAAINAEDRQKSKI 210 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGPSKSFAADFGGKFVSE 241 +NLL I GEDQVTLKVTIAEV R +LKQ+GF +I+G SS G S S G S Sbjct: 211 VNLLKIDGEDQVTLKVTIAEVSRQVLKQLGFNTTISGDGSSSFGNSPSPWLSVPG-LASV 269 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G SV G + + ALERA IRTLAEP+LTAISG+ A F+ GG ++ Sbjct: 270 G---SVAGTISGARISADISALERAGVIRTLAEPSLTAISGEVARFSVGGSFEIESERDE 326 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 G T +YG+ L FTP VL+PGRI LRI+TEVSEP +PS + R+A+T+VE Sbjct: 327 DG-TIFEEKEYGIKLEFTPVVLAPGRISLRIKTEVSEPTF-EGQSPLPSIQKREAETSVE 384 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 LPSGG++VLAGL++D +Q G+P SKIP+LG+LFR+ F R ETE+ I ATP+LVKP Sbjct: 385 LPSGGSMVLAGLVRDSYRQTISGMPGASKIPVLGSLFRSKEFLRNETELVIIATPYLVKP 444 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 VA +LSRPDD+++ D FF RVN++YG E G+ Y GA+GFIYK Sbjct: 445 VARNELSRPDDNFNAPSDGAGFFLGRVNRVYGQMETGLPAGR-YHGAVGFIYK 496 >gi|227823971|ref|YP_002827944.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium fredii NGR234] gi|227342973|gb|ACP27191.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium fredii NGR234] Length = 515 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 225/518 (43%), Positives = 319/518 (61%), Gaps = 47/518 (9%) Query: 1 MRYLQRTFFTMMSIFL-FSSNPSVAKLPPIKEANAA---VINISDVEIGKGKKISIGLNK 56 M+ TF T ++ L FS S LP + A AA V+ I + G +K+++GLNK Sbjct: 1 MKRSGNTFRTCLAAGLSFSLTFSGLMLPAVPTAQAAASSVVRIVESGPGVKRKVNLGLNK 60 Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 +++ +P D D+LV+DP AD V + R +YLFGK VGQ N+ + G +G+++++L++ + Sbjct: 61 AVVVDLPTDAHDILVADPVLADAVTRTSRRIYLFGKTVGQTNIFVFGPNGEEIVSLEVAV 120 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG---- 172 ERD+A LE LRRFI +++I VE++SD VVL G VRT DS +AV+L+ FL Q G Sbjct: 121 ERDVAGLEANLRRFIPEADINVEIISDNVVLTGTVRTPLDSTKAVDLARAFL-QGGEATT 179 Query: 173 RNQYANSS------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 RN A + + +++NLL + GEDQVTLKVT+AEV R +LKQ+GF I+ Sbjct: 180 RNITAQGTNGDADIFAEERQTSQIVNLLTVEGEDQVTLKVTVAEVSRQVLKQLGFNGRIS 239 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 SG S A+ G + G + +KG + + + ++A+E+A +RTLAEP+LTAI Sbjct: 240 DGESGLSFRNPANL-GDAIGVGANALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAI 298 Query: 281 SGQSASFTSGG-------QHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGR 327 SGQ A F GG Q + +TG + V +YG+ L+F P VL GR Sbjct: 299 SGQEAKFYVGGEFRLAGVQEITTEEDEATGESVPVVEREVEDAEYGIRLNFKPVVLGAGR 358 Query: 328 IGLRIQTEVSEP------VIGVNAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKD 376 I L I+TEVSEP V G + D+P R R+A T+VELPSGG+IV+AGL++D Sbjct: 359 ISLAIETEVSEPTYEGSVVTGNSFRDIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQD 418 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 +I+Q G+P SKIPILG LFR+ F R E+E+ I ATP+LV+PVA LSRPDD+++ Sbjct: 419 NIRQAMSGLPGASKIPILGTLFRSKDFQRNESELVIIATPYLVRPVARSALSRPDDNFNP 478 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +D ++FF RVN+IYG EA+ G+ Y G +GFIYK Sbjct: 479 ANDLESFFVGRVNRIYGRPEAAPPVGR-YHGNVGFIYK 515 >gi|150398541|ref|YP_001329008.1| type II and III secretion system protein [Sinorhizobium medicae WSM419] gi|150030056|gb|ABR62173.1| type II and III secretion system protein [Sinorhizobium medicae WSM419] Length = 524 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 211/474 (44%), Positives = 302/474 (63%), Gaps = 37/474 (7%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+ I + G K I++GLNK +++ +P D D+LV+DP+ AD + + R +YLFGK+VG Sbjct: 53 VVRIVNSGPGARKTINLGLNKAVVVDLPSDAHDILVADPSLADAITRTSRRIYLFGKSVG 112 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 Q N+ + G G+++++L++ +ERD+A LE LRRFI D++I+VE++SD VVL G VRT Sbjct: 113 QTNIFVFGPGGEEIVSLEVAVERDVAGLESNLRRFIPDADIKVEIISDNVVLTGTVRTPL 172 Query: 156 DSQRAVELSETFL----------SQSGRNQYA-----NSSSKKVMNLLNIAGEDQVTLKV 200 DS RAV+L+ FL + G N A + S +++NLL I G+DQVTLKV Sbjct: 173 DSTRAVDLARAFLKGGEATTRNITAQGNNGDADIFAEDRQSSQIVNLLTIEGDDQVTLKV 232 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 T+AEV R +LKQ+GF ++ SG S A+ G + G + +KG + + + + Sbjct: 233 TVAEVSRQVLKQLGFNGRVSDGESGISFRNPANL-GDMIGIGTNALIKGSIGGTTISSYI 291 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTH----D 311 +A+E+A +RTLAEP+LTAISGQ A F GG+ V +G T+V + Sbjct: 292 NAMEQAGVMRTLAEPSLTAISGQEAKFYVGGEFRLAGVQEVSTDDDSGETTVEREVNDVE 351 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMP-----SYRVRKADTTV 360 YG+ L+F P VL PGRI L+I+T+VSEP V G ++P R R+A T+V Sbjct: 352 YGIRLNFKPVVLGPGRISLQIETDVSEPTYEGSVVTGNGTVNIPGNTFLGIRRREASTSV 411 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ELPSGG+IV+AGL++D+I+Q G+P SKIPILG LFR+ F R ETE+ I ATP+LV+ Sbjct: 412 ELPSGGSIVIAGLVQDNIRQAMSGLPAASKIPILGTLFRSKDFQRSETELVIIATPYLVR 471 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 PVA +SRPDD+++ +D ++FF RVN+IYG EA G+ Y G +GFIYK Sbjct: 472 PVARSAISRPDDNFNPANDLESFFLGRVNRIYGRAEAQPPAGR-YHGNVGFIYK 524 >gi|260461949|ref|ZP_05810194.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259032196|gb|EEW33462.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 505 Score = 359 bits (921), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 196/471 (41%), Positives = 297/471 (63%), Gaps = 51/471 (10%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 +++ +GLNK +++ +P D D+LV++P+ AD V + R +YLFGK VG+ N+ + G +G+ Sbjct: 42 QRVKLGLNKSVVIDLPSDAYDILVANPSVADAVTRTARRIYLFGKAVGETNIFVFGPNGE 101 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 Q+ +LD+ +ERD+A LE +RRFI S+I+VE+++D VVL G V T DS+RAV+L+ F Sbjct: 102 QIASLDLAVERDVAGLEDYIRRFIPTSDIKVELLNDNVVLTGTVDTPLDSKRAVDLATIF 161 Query: 168 LS--QSGRNQYANSS-------------------SKKVMNLLNIAGEDQVTLKVTIAEVR 206 +S ++ QY+ ++ + K++NLL I G+DQVTLKVT+AEV Sbjct: 162 VSGGEATTGQYSQTAAGGSAQSGVDINNPDQERRTSKIVNLLQIIGDDQVTLKVTVAEVS 221 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALER 265 R ++KQ+G +G S+G S +D F G S G ++ + ++A+E+ Sbjct: 222 RSVMKQLGVNMVGSGGSNGISYGALSD---PFTGLGKPLSNAGFSINASGLQAYINAMEQ 278 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQH-LYKTVSSSTGAT--------SVTTHDYGVVL 316 + ++TLAEPTLTA+SG+ A+F GG++ + VS++ A SV +YG+ L Sbjct: 279 SGVMKTLAEPTLTAVSGEKATFKVGGEYNMVTGVSANVSADNQTGLKTYSVDKIEYGIGL 338 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVI-------------GVNAGDMPSYRVRKADTTVELP 363 F P VLSPGRI L+++T VSEP G+NA S R R ADTTVELP Sbjct: 339 EFQPVVLSPGRISLKVRTSVSEPTTEGSVSSSTSNTSVGMNA---LSLRKRLADTTVELP 395 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SGG++++AGL++DD++Q G+P L+KIP+LGALFR+ F R ETE+ I TP+LVKPVA Sbjct: 396 SGGSMMIAGLVRDDVRQAVNGLPGLTKIPVLGALFRSRDFVRNETELVIIITPYLVKPVA 455 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 DL++PDD+++ D A F +VN++YG + + G+ Y G +G+IYK Sbjct: 456 RNDLAKPDDNFNAASDGAAMFLGKVNRVYGTMQTDKPNGR-YHGVVGYIYK 505 >gi|13474660|ref|NP_106229.1| exporter protein, cpaC [Mesorhizobium loti MAFF303099] gi|14025415|dbj|BAB52015.1| exporter protein; CpaC [Mesorhizobium loti MAFF303099] Length = 471 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 195/468 (41%), Positives = 298/468 (63%), Gaps = 45/468 (9%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 +++ +GLNK +++ +P D D+LV++PT AD V + R +YLFGK+VG+ N+ + G +G+ Sbjct: 8 QRVKLGLNKSVVIDLPSDAYDILVANPTVADAVTRTARRIYLFGKSVGETNIFVFGPNGE 67 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 Q+ +LD+ +ERD+A LE +RRF+ S+++VE+++D VVL G V T D++RAV+L+ F Sbjct: 68 QIASLDLAVERDVAGLEDYIRRFLPTSDVKVELLNDNVVLTGTVDTPLDAKRAVDLATIF 127 Query: 168 LS--QSGRNQYANSSS-------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206 +S ++ QY+ +++ K++NLL I G+DQVTLKVT+AEV Sbjct: 128 VSGGEATTGQYSQTAAGGSAQGGVDINNPDQERRVSKIVNLLQIIGDDQVTLKVTVAEVS 187 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALER 265 R ++KQ+G G S+G S +D F G S G + + ++A+E+ Sbjct: 188 RSVMKQLGVNMVGNGGSNGISYGALSD---NFTGLGKQLSHSGFNIGNSALMAYINAMEQ 244 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQH-LYKTVS---SSTGATSVTTH-----DYGVVL 316 + ++TLAEPTLTA+SG+ A+F GG++ L VS SS T +TT+ +YG+ L Sbjct: 245 SGVMKTLAEPTLTAVSGEKATFKVGGEYNLLTGVSQNVSSDNQTGLTTYTINKIEYGIGL 304 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVI--------GVNA--GDMPSYRVRKADTTVELPSGG 366 F P VLSPGRI L+++T VSEP GV + +M S R R ADTTVELPSGG Sbjct: 305 EFQPVVLSPGRISLKVRTSVSEPTTEGSVALSNGVTSPGANMLSLRKRLADTTVELPSGG 364 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++AGL++DD++Q G+P L+KIP+LGALFR+ F R E+E+ I TP+L KPVA D Sbjct: 365 SMMIAGLVRDDVRQAVNGLPGLTKIPVLGALFRSRDFVRNESELVIIITPYLAKPVARND 424 Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 L++PDD+++ D A F +VN++YG + + G+ Y G +G+IYK Sbjct: 425 LAKPDDNFNPASDGAANFLGKVNRVYGTMQTDKPNGR-YHGVVGYIYK 471 >gi|319785608|ref|YP_004145084.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171496|gb|ADV15034.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 506 Score = 352 bits (903), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 191/468 (40%), Positives = 293/468 (62%), Gaps = 45/468 (9%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 +++ +GLNK +++ +P D D+LV++P AD V + R +YLFGK VG+ N+ + G +G+ Sbjct: 43 QRVKLGLNKSVVIDLPSDAYDILVANPAVADAVTRTARRIYLFGKAVGETNIFVFGPNGE 102 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 Q+++LD+ +ERD+A LE +RRF+ S ++VE+++D VVL G V T D++RA +L+ F Sbjct: 103 QIVSLDLAVERDVAGLEDYIRRFLPTSAVKVELLNDNVVLTGTVDTPLDAKRAEQLANMF 162 Query: 168 LS--QSGRNQYANSS-------------------SKKVMNLLNIAGEDQVTLKVTIAEVR 206 +S ++ QY+ ++ + +++NL+ I G+DQVTLKVT+AEV Sbjct: 163 VSGGEATTGQYSQTAAGGSAQSGVDINNPDQERRTSQIVNLIQIIGDDQVTLKVTVAEVS 222 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALER 265 R ++KQ+G +G S+G S +D F G S G + + ++A+E+ Sbjct: 223 RSVMKQLGVNMVGSGGSNGISYGAISD---NFTGLGKQLSNSGFQIGASGLQAYVNAMEQ 279 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TG--ATSVTTHDYGVVL 316 + ++TLAEPTLTA+SG+ A+F GG++ T S+ TG SV +YG+ L Sbjct: 280 SGVMKTLAEPTLTAVSGEKATFKVGGEYNMVTGVSANVSQDNQTGLKTYSVEKIEYGIGL 339 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRK--ADTTVELPSGG 366 F P VLSPGRI L+++T VSEP GV + M + +RK ADTTVELPSGG Sbjct: 340 EFQPVVLSPGRISLKVRTSVSEPTTEGSVSFSSGVTSPGMNALSLRKRLADTTVELPSGG 399 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++AGL++DD++Q G+P L+KIP+LGALFR+ F R ETE+ I TP+LVKPVA D Sbjct: 400 SMMIAGLVRDDVRQAVNGLPGLTKIPVLGALFRSRDFVRNETELVIIITPYLVKPVARND 459 Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 L++PDD+++ D F RVN++YG + + G+ Y G +GFIYK Sbjct: 460 LAKPDDNFNAASDGAGMFLGRVNRVYGTMQTDKPNGR-YHGVVGFIYK 506 >gi|239833237|ref|ZP_04681566.1| type II and III secretion system protein [Ochrobactrum intermedium LMG 3301] gi|239825504|gb|EEQ97072.1| type II and III secretion system protein [Ochrobactrum intermedium LMG 3301] Length = 507 Score = 348 bits (894), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 209/521 (40%), Positives = 303/521 (58%), Gaps = 61/521 (11%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG---KGKKISIGLNKV 57 MR R I L + + LP A I V++G + + I +GLNK Sbjct: 1 MRKTNRVRPYSARIALLAGALATVSLPLADMTAMAAAGI--VKVGSQQRSQTIKLGLNKS 58 Query: 58 IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 ++L +P D DVLVS+PT AD V + R +YLFGK VGQ N+ + G +G+Q+ ++D+ IE Sbjct: 59 VVLDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGQNGEQVASIDVEIE 118 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--QSGRNQ 175 RD++ L L+R I S+IRVE+++D VVL G V+T QDS +A +L+ F+S ++ Q Sbjct: 119 RDVSGLSSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQ 178 Query: 176 YANSSS-------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 Y+ ++S ++N+L I GEDQVTLKVT+AEV R ++KQ+G Sbjct: 179 YSTTASAPTDGGGVAINNPDWGRRQSAIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVN 238 Query: 217 HSITGSSSGPSKSFAADFGGKFVSE------GGDFSVKGV-LDRFSFETVLHALERATAI 269 + +G S+G S +GG +SE G + S G L +F L A+E A + Sbjct: 239 MTGSGVSNGIS------YGG--ISENIAGAIGNNLSDTGFGLATSNFSAYLRAMESAGVM 290 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------GATSVTTHDYGVVLHFTPTVL 323 +TLAEPTLTAISG+ A+F GG+ Y ++S T + +YG+ L F PTVL Sbjct: 291 KTLAEPTLTAISGEKAAFNVGGE--YNVINSVTYDDDGKRTNQLAKINYGIGLEFMPTVL 348 Query: 324 SPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 PGRI L+I+T VSEP GV A + S R R ADTTVELPSGG++++ GL Sbjct: 349 GPGRISLKIRTSVSEPTTEGAGTTNKMEGVGASVL-SLRKRVADTTVELPSGGSMMIGGL 407 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 ++D+++Q G P L+KIP+LGALFR+ F R E+E+ + TP+L +PVA + L+RPDD+ Sbjct: 408 IRDEVRQSVSGFPGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDN 467 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 + D + +VN++YG E G+ Y G +G+IYK Sbjct: 468 LNPASDGAGYILGKVNRVYGTMETKLPPGR-YNGVVGYIYK 507 >gi|110636321|ref|YP_676529.1| type II and III secretion system protein [Mesorhizobium sp. BNC1] gi|110287305|gb|ABG65364.1| type II and III secretion system protein [Chelativorans sp. BNC1] Length = 516 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 197/476 (41%), Positives = 290/476 (60%), Gaps = 54/476 (11%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 +++ +GLNK ++L +P D D+LV++P AD V + R +YLFGK VG+ N+ + G G+ Sbjct: 46 ERLKLGLNKTLVLDLPSDAYDILVANPAVADAVTRTARRIYLFGKQVGETNIFVFGAGGE 105 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 Q+ +D+ +ERD+A LE L+RFI +SNI VE+++D VVL G V T D+ RA +L+ F Sbjct: 106 QIARIDVAVERDVAGLEQYLKRFIPNSNIDVELINDNVVLTGTVETPLDASRAAQLATIF 165 Query: 168 LS--QSGRNQYANSSS-------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ ++ QY+ +++ K++N+L I GEDQVTLKVT+AEV Sbjct: 166 VTGGEATTGQYSQTAAAPTDGGGVAISNPDSARQVSKIVNMLQIIGEDQVTLKVTVAEVS 225 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 R ++KQ+G +GS G S D +G + ++ G L + L+A+E Sbjct: 226 RSVMKQLGVNMIGSGSLDGISWGAIVDSPYGLGAPASASQLALGGSL----LQGYLNAME 281 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGG-------QHLYKTVSSSTGATSVTTH----DYG 313 +A ++TL+EPTLTAISG+ A+F GG Q + + +S A +T DYG Sbjct: 282 QAGVMKTLSEPTLTAISGEKATFKVGGEFNLVTGQKVEQGDASKGQADQLTYEVEKIDYG 341 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPV-----------IG--VNAGDMPSYRVRK--ADT 358 + L FTPTVLSPGRI L+++T VSEP IG N+ M + +RK ADT Sbjct: 342 IGLEFTPTVLSPGRISLKVRTSVSEPTFEGSFSLGSPSIGGRFNSPGMNALSIRKRLADT 401 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TVELPSGG++++AGL++DD++Q G+P LSKIPILG LFR+ F R ETE+ I TP+L Sbjct: 402 TVELPSGGSMMIAGLVRDDVRQTINGLPGLSKIPILGTLFRSRDFVRNETELVIIITPYL 461 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +PVA L+RPDD+++ D F RVN+IYG + + +G+ Y G +G+IYK Sbjct: 462 ARPVARTALARPDDNFNPPSDGAGIFLGRVNRIYGAMKTNLPKGR-YHGVVGYIYK 516 >gi|153008059|ref|YP_001369274.1| type II and III secretion system protein [Ochrobactrum anthropi ATCC 49188] gi|151559947|gb|ABS13445.1| type II and III secretion system protein [Ochrobactrum anthropi ATCC 49188] Length = 507 Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 205/521 (39%), Positives = 304/521 (58%), Gaps = 61/521 (11%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG---KGKKISIGLNKV 57 MR +R + L +S + LP + A + V++G + + I +GLNK Sbjct: 1 MRKTKRVRPYSAKVALLTSALAAFSLPLTDMSAMAAAGV--VKVGSQQRSQTIKLGLNKS 58 Query: 58 IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 ++L +P D DVLVS+PT AD V + R +YLFGK VGQ N+ + G +G+Q+ ++D+ IE Sbjct: 59 VVLDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGPNGEQVASIDVEIE 118 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--QSGRNQ 175 RD++ + L+R I S+IRVE+++D VVL G V+T QDS +A +L+ F+S ++ Q Sbjct: 119 RDVSGISSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQ 178 Query: 176 YANSSS-------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + ++S ++N+L I GEDQVTLKVT+AEV R ++KQ+G Sbjct: 179 FTTTASAPTDGGGVAINNPDRNRRASAIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVN 238 Query: 217 HSITGSSSGPSKSFAADFGGKFVSE------GGDFSVKGV-LDRFSFETVLHALERATAI 269 + +G S+G S +GG +SE G + S G L +F L A+E A + Sbjct: 239 MAGSGVSNGIS------YGG--ISESIAGAIGNNLSDTGFGLATSNFSAYLRAMESAGVM 290 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVTTHDYGVVLHFTPTVL 323 +TLAEPTLTAISG+ A+F GG+ Y ++S + +YG+ L F PTVL Sbjct: 291 KTLAEPTLTAISGEKAAFNVGGE--YNVINSVKYDDDGKRTNELAKINYGIGLEFMPTVL 348 Query: 324 SPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 PGRI L+I+T VSEP GV A + S R R ADTTVELPSGG++++ GL Sbjct: 349 GPGRISLKIRTSVSEPTTEGAGTTNKMDGVGASVL-SLRKRVADTTVELPSGGSMMIGGL 407 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 ++D+++Q G P L+KIP+LGALFR+ F R E+E+ + TP+L +PVA + L+RPDD+ Sbjct: 408 IRDEVRQSVSGFPGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDN 467 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 + D + +VN++YG E G+ Y G +G+IYK Sbjct: 468 LNPASDGAGYILGKVNRVYGTMETKLPPGR-YNGVVGYIYK 507 >gi|90419764|ref|ZP_01227673.1| Flp pilus assembly protein, secretin CpaC (type II and type III secretion system) [Aurantimonas manganoxydans SI85-9A1] gi|90335805|gb|EAS49553.1| Flp pilus assembly protein, secretin CpaC (type II and type III secretion system) [Aurantimonas manganoxydans SI85-9A1] Length = 540 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 202/537 (37%), Positives = 302/537 (56%), Gaps = 74/537 (13%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 +R R +M+ + P LP +A V+N+ + I++GLNK ++ Sbjct: 15 LRARLRKLVVVMAAASTALAPLATTLP--AQAEQTVVNVRQ----GSQSINLGLNKTKVI 68 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + D D+LV++P AD V R +Y+FGK +GQ N+++ +Q+ ++D+ IERDI Sbjct: 69 VLEADAHDILVANPAVADAVTRDARRIYIFGKQIGQTNIVVFDRQNRQIASIDLKIERDI 128 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--QSGRNQYAN 178 LE T+R+++ S ++VEM++D VVL+G V+T QD+ + L+ F++ + QY Sbjct: 129 NGLEATIRKYVPSSVVQVEMLNDNVVLNGTVQTPQDAAKVERLARLFVTGGEGTTGQYIQ 188 Query: 179 SSS---------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 ++ +++NLL I GEDQVTLKVT+AEV+R ++KQ+G Sbjct: 189 QATASGGAGGGDGDVGFAQEDRRQSQIVNLLQIQGEDQVTLKVTVAEVQRSVVKQLGINS 248 Query: 218 SI-TGSSSGPSKS-FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + G + G + S FA GK +S + G + F L+A+E+A +RTLAEP Sbjct: 249 TAGKGVTYGQTDSPFAL---GKALSSS-MLASAGSIGGFDITAQLNAMEQAGVMRTLAEP 304 Query: 276 TLTAISGQSASFTSGG---------------------------QHLYKTVSSSTGATSV- 307 +LTAISG+ ASF GG Q +Y T+ + S+ Sbjct: 305 SLTAISGEKASFKVGGEFTVPDAQSYDPGTPARREFQGYDGSGQAIYDTIPAEPPTRSID 364 Query: 308 -TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRK--AD 357 T +YG+ L FTP VLSPGRI L+I+T VSEP + G G + + +RK AD Sbjct: 365 KTRVEYGIGLDFTPVVLSPGRISLKIRTAVSEPTFEMPFNISGGKDGGVGTVGIRKRLAD 424 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTVELPSGG++V+AGL++D+++Q+ G P LSKIP+LG LFR+ F R ETE+ I TP+ Sbjct: 425 TTVELPSGGSLVIAGLVRDEVRQVMSGFPGLSKIPVLGTLFRSRDFQRYETELVIIVTPY 484 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 LV+PV + L+RPDD +++ D A F RVN++YG E G+ Y G +GFIYK Sbjct: 485 LVRPVPRQALARPDDGFALSSDGAANFLGRVNRVYGHMETKLPPGR-YHGVVGFIYK 540 >gi|114705456|ref|ZP_01438364.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506] gi|114540241|gb|EAU43361.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506] Length = 544 Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 192/503 (38%), Positives = 286/503 (56%), Gaps = 77/503 (15%) Query: 42 VEIGKGK-KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 V+IG G +I +GL+K +L + D D+LV++P+ AD + R +YLFGK VGQ N+I Sbjct: 49 VQIGAGHTRIELGLDKSKVLVLSADAHDILVANPSIADALTRDRRHIYLFGKQVGQTNLI 108 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + +Q+ ++DI IERDIA L + +++ DS+++VE+++D VVL G VRT DS+R Sbjct: 109 VFDQANRQIASIDIQIERDIAGLSQAIAKYVPDSDVKVEIMNDNVVLTGRVRTPLDSKRV 168 Query: 161 VELSETFLS--QSGRNQYANSSS---------------------KKVMNLLNIAGEDQVT 197 +++ +L+ ++ QY S+S +++NLL I GEDQVT Sbjct: 169 SQIASAYLTGGEATTGQYIRSASAGGESEGSNGDVAFASETRRESQIINLLQIEGEDQVT 228 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVLDRFS 255 LKVT+AEV+R I+KQ+G + + G + D FG + +F + G + Sbjct: 229 LKVTVAEVQRSIIKQLGLNGATSSVIDGMTFGSLIDNPFGLGKAASNSNFGLAGTIGDTG 288 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--------------------- 294 L A+++A +RTLAEP LTAISG+SASF GG+ L Sbjct: 289 IRAQLSAMDQAGVMRTLAEPNLTAISGESASFKVGGEFLLPTGQSYDYGEEAKREFKGFD 348 Query: 295 ------YKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEP------- 339 Y+ V ++ +V T +YG+ L FTP VLSPGRI L+++T VSEP Sbjct: 349 GDGRAIYEEVPATRDVRTVETKTIEYGIGLDFTPVVLSPGRISLKVRTSVSEPTFETPFG 408 Query: 340 --------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 V G+ R R ADTTVELPSGG++V+AGL++D+++Q+ G P LSK+ Sbjct: 409 SSGGFDGGVTGIG------IRKRLADTTVELPSGGSLVIAGLVRDEVRQVVSGFPGLSKL 462 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P+LG+LFR+ F R ETE+ + TP+LV+PVA L+RPDD + D + F ++N++ Sbjct: 463 PVLGSLFRSRDFQRYETELVVIVTPYLVRPVAREALARPDDGLAFASDGASNFLGKINRV 522 Query: 452 YGPKEASEVEGQNYKGAIGFIYK 474 YG E G+ Y G +G+IYK Sbjct: 523 YGHSETKLPPGR-YHGVVGYIYK 544 >gi|304392384|ref|ZP_07374325.1| type II and III secretion system protein [Ahrensia sp. R2A130] gi|303295488|gb|EFL89847.1| type II and III secretion system protein [Ahrensia sp. R2A130] Length = 544 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 182/446 (40%), Positives = 271/446 (60%), Gaps = 21/446 (4%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 K + +GL+K +++ +P DVLV++P AD V+ + + +YLFGK VGQ NV + + G Sbjct: 101 KLVRLGLDKSLVVDLPSVANDVLVANPGVADAVMRTSQRLYLFGKQVGQTNVFVFDNGGN 160 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 Q+ L+ILIERDI+ LE TL R I +S+I+ EM++D +VL G V T DS +A L++ F Sbjct: 161 QIAALEILIERDISGLEETLSRLIPNSDIQAEMINDNIVLTGRVSTPSDSTKAQSLAQIF 220 Query: 168 LSQSGRNQ--------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + ++ + +++NLL I GEDQV LKV+I E++R ++KQ+G S+ Sbjct: 221 VRGGEQTTNPAQQSSIFGDAPTSEIVNLLKIDGEDQVMLKVSIVEIQRSVVKQLGITTSL 280 Query: 220 TGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 T ++ G F+ GG G S V + + + L L+ IR LAEPT Sbjct: 281 TNAAEG-GFGFSTIAGGSVRNIAGAGLRGSANIVSGQNTLDAQLRVLDHTGMIRMLAEPT 339 Query: 277 LTAISGQSASFTSGGQHLY-KTVSSSTGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQ 333 LTAISG++A F +GG + + + TS+ + YGV L F PTVL+ GRI L+++ Sbjct: 340 LTAISGEAAEFRAGGTYQAPQQIERDENGTSIEYEERQYGVSLQFIPTVLTEGRISLKLK 399 Query: 334 TEVSEPVIGVNAG-----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 TEV EP + + G + R R A TTVELPSGG++ +AGL++DD++Q G P L Sbjct: 400 TEVKEPSLHGSTGRSSDAGLFGTRERVASTTVELPSGGSMAIAGLIQDDLRQNISGFPGL 459 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 SK+PI GALFR+ F+R ETE+ I TP+LV+PVA L+ PD+ + + F RV Sbjct: 460 SKLPIFGALFRSREFHRSETELVIIVTPYLVRPVARAKLANPDEGFQPASEPAGIFMGRV 519 Query: 449 NKIYGPKEASEVEGQNYKGAIGFIYK 474 N++YG K+ + +G+ Y G+IGFI K Sbjct: 520 NRVYGTKQGNLPKGR-YTGSIGFILK 544 >gi|118589703|ref|ZP_01547108.1| pilus assembly protein [Stappia aggregata IAM 12614] gi|118437789|gb|EAV44425.1| pilus assembly protein [Stappia aggregata IAM 12614] Length = 483 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 184/455 (40%), Positives = 280/455 (61%), Gaps = 38/455 (8%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 ++I+ E G+ +++G+ + +++ + D DVLVS+P AD V+ +PR +++ G GQ Sbjct: 50 VHIAAGERATGRILNVGVGRSVVINLAEDAADVLVSNPEIADAVLRTPRRIFVIGNTAGQ 109 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 + ++L G+++ + D+ +E+D + + +R+ I SNI E ++ +VVL G ++ + Sbjct: 110 SRLVLFSRSGRELASFDVRVEKDTSDITRIIRKLIPGSNIFAESINGSVVLSGTAKSTLE 169 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-- 214 +Q+A +++ F Q A S+S+ V+NL+++AG+DQV LKVT+AEV R I+KQ+G Sbjct: 170 AQQAADIAAKF-------QGAASASE-VVNLISVAGKDQVHLKVTVAEVERSIIKQLGVQ 221 Query: 215 FQHSITGSSSGPSKSFAADF-----------GGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 FQ +I + P S +F GG ++ G S + AL Sbjct: 222 FQGTIGIGNFTPFMSSLPNFTVNPTIVNQAVGGTQLTAGAT----------SITAQVEAL 271 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 +R IRTLAEPTLTAISG++ASF +GG+ +S G SV +GV L FTP VL Sbjct: 272 QREGVIRTLAEPTLTAISGENASFLAGGEFPIP-ISQRDGELSVEFKKFGVGLDFTPVVL 330 Query: 324 SPGRIGLRIQTEVSEPVI--GVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 S GRI LR++TEVSE V+AG + + +VR+A++T+ELPSGGT+V+AGLL++ Q Sbjct: 331 SEGRISLRVKTEVSELSNDGAVSAGGITISALKVRRAESTMELPSGGTLVMAGLLQESYQ 390 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 Q EG+P L +IPILGALF++ F RE+TE+ + TP++V+PVA+ L RPD + D Sbjct: 391 QAIEGVPGLMQIPILGALFKSRDFLREQTELAVFVTPYVVQPVAVSKLQRPDKNLMAPSD 450 Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 A F NR+NKIY P A+ EG Y G +GFIYK Sbjct: 451 AGTIFLNRLNKIYNPTGAA-AEG-TYHGQVGFIYK 483 >gi|254501806|ref|ZP_05113957.1| Putative phospholipid-binding domain family [Labrenzia alexandrii DFL-11] gi|222437877|gb|EEE44556.1| Putative phospholipid-binding domain family [Labrenzia alexandrii DFL-11] Length = 483 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 173/465 (37%), Positives = 275/465 (59%), Gaps = 44/465 (9%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89 +EA + I+++ E + +++G+ + +++ + D DVLVS+P AD V+ +PR +++ Sbjct: 43 QEAFPSQIHVAAGERATDRILNVGIGRSVVINLAEDAADVLVSNPQIADAVLRTPRRIFV 102 Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149 G GQA ++L G G+++ + DI +E+D + + +RR I ++++ E ++ VVL G Sbjct: 103 LGNTAGQARLVLFGRSGRELASFDIRVEKDTSDITRIIRRLIPGTSVQAESINGKVVLSG 162 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 ++ ++Q+A +++ F + + ++NL+ ++G DQV LKVT+AEV R I Sbjct: 163 TAKSTLEAQQAADIAAKF--------QGDETGSAIVNLIAVSGSDQVHLKVTVAEVERSI 214 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFG-GKFVSEGGDF------------SVKGVL---DR 253 +KQ+G SF A+ G G F G +F + GV Sbjct: 215 IKQLGV-------------SFQANLGAGNFFPFGSNFPNFNVNPSIVNQATGGVTFSSGT 261 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 S + AL+R IRTLAEPTLTA SG++ASF +GG+ ++ SV +G Sbjct: 262 SSLTAQVEALQRDGVIRTLAEPTLTATSGENASFLAGGEFPIP-IAQEDNQISVEFKKFG 320 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDM--PSYRVRKADTTVELPSGGTIV 369 V L FTP VL+ GRI LR++TEVSE V+AG + + +VR+A++T+ELPSGGT+V Sbjct: 321 VGLDFTPIVLTGGRISLRVKTEVSELSNEGAVSAGGITISALKVRRAESTMELPSGGTLV 380 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 +AGLL++ QQ EG+P L +IP+LGALF++ F +++TE+ + TP++VKPVA + + R Sbjct: 381 MAGLLEESYQQAVEGVPGLMQIPVLGALFKSRDFLKQQTELAVFVTPYVVKPVAAQKMVR 440 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 PD + DA+A F NR+NKI+ P A E Y G +GFIYK Sbjct: 441 PDKNLFAPSDAEAIFLNRLNKIFNP--AGEQAQGTYHGQVGFIYK 483 >gi|92116013|ref|YP_575742.1| type II and III secretion system protein [Nitrobacter hamburgensis X14] gi|91798907|gb|ABE61282.1| type II and III secretion system protein [Nitrobacter hamburgensis X14] Length = 486 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 178/493 (36%), Positives = 278/493 (56%), Gaps = 55/493 (11%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 + +I F+ NP+ L P+ ++ V + + +S+G+ K +++ +P DV+D Sbjct: 18 LSFAAIAAFTLNPA---LTPVFASDYRVPAATAGAKMHAQSLSLGIGKSVVVDLPRDVKD 74 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 VLV+DP A+ VV S + Y+ G VGQ N+I G+Q+ DI + RD+ L L+ Sbjct: 75 VLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDGSGQQISAYDIAVTRDLNGLRAALK 134 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + + +++I+++ + D VVL G ++ +SQ+A +L+ + KV+N + Sbjct: 135 QILPNADIKIDGLGDGVVLSGWAQSPVESQQAADLAARLAG----------GADKVVNSI 184 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIG---------------FQHS----ITGSSSGPSKS 229 + G DQV LKV +AEV+RDI+KQ+G F +S TGS+ P S Sbjct: 185 AVRGRDQVMLKVVVAEVQRDIIKQLGVDLSANLSYGTAVVNFNNSNPFLATGSALVPGNS 244 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETV---LHALERATAIRTLAEPTLTAISGQSAS 286 FG K +++ + TV L A+E + IRTLAEP+LTAISG+SA+ Sbjct: 245 VVGGFG------------KSIINGVTMPTVQATLRAMENSGVIRTLAEPSLTAISGESAN 292 Query: 287 FTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339 F +GG+ + S T T +VT +G+ L+FTP VLS GRI LR+ TE SE Sbjct: 293 FLAGGEFPIPSGVSCTNGTCTPTVTFKKFGISLNFTPVVLSEGRISLRVATEASEVNNEN 352 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 I ++ +PS + R+ADTT+E+PSGG++V+AGL+K +Q G+P +S+IP+LG LFR Sbjct: 353 AIQISGTAVPSIKTRRADTTLEIPSGGSMVMAGLIKQQTKQSISGMPGVSQIPVLGTLFR 412 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + + TE+ I TP++V+ VA +DLSRPDD ++ D +A +N+IYG +E Sbjct: 413 SRDYVNNNTELMILVTPYVVRAVAQKDLSRPDDGFADASDPQADLLGSINRIYGVPGRAE 472 Query: 460 VEGQNYKGAIGFI 472 + Y+G GFI Sbjct: 473 -PARQYRGTYGFI 484 >gi|86748907|ref|YP_485403.1| type II and III secretion system protein [Rhodopseudomonas palustris HaA2] gi|86571935|gb|ABD06492.1| type II and III secretion system protein [Rhodopseudomonas palustris HaA2] Length = 479 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 172/487 (35%), Positives = 278/487 (57%), Gaps = 33/487 (6%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG---KKISIGLNKVI 58 R+++ T M++ S+ ++ LPP A+ + + G G + +++G+ K + Sbjct: 8 RFIRTLTGTAMAV---SAVVALTMLPPWTPVKASDYRATTTQTGGGMNARPLALGIGKSV 64 Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++ +P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI + R Sbjct: 65 VIDLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTR 124 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D+ + L++ I +++IRVE + D V+L G V T ++Q+A +L+ + Sbjct: 125 DLNGIRAALQQSIPNADIRVEGLGDGVILMGSVATPIEAQQAADLAARLAGDA------- 177 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----AD 233 KV+N + I G DQV LK+T+AEV+RDI+KQ+G + S SF Sbjct: 178 ---SKVVNNIAIRGRDQVMLKITVAEVQRDIVKQLGVDLTANLSYGTSVVSFTNTNPFTQ 234 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G VS G+ + S L A+E A +RTLAEP LTAISG+ ASF +GG+ Sbjct: 235 SGQALVS--GNALTTSFGNGPSITATLKAMESAGVVRTLAEPNLTAISGEPASFLAGGEF 292 Query: 294 LYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346 + + T A SV+ +GV+L+FTP VLS GRI L++ TEVSE + ++ Sbjct: 293 PVPSGVTCTNAVCTPSVSYKKFGVLLNFTPVVLSEGRISLKVATEVSEVSSDNSVTISGT 352 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +PS + R+ D+TVE+PSGG++ +AGL+++ +Q G+P +++IPILG LFR+ + Sbjct: 353 TVPSIKTRRVDSTVEIPSGGSLAMAGLIQEQTKQAINGMPGMTQIPILGTLFRSRDYINR 412 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG-PKEASEVEGQNY 465 ++E+ + TP++V+ VA +DLSRPDD ++ D ++ +N+IYG P + Q Y Sbjct: 413 QSELMVLVTPYVVRAVAPKDLSRPDDGFADASDPQSDLLGSINRIYGVPGRTG--QSQTY 470 Query: 466 KGAIGFI 472 +G GFI Sbjct: 471 RGRFGFI 477 >gi|154250689|ref|YP_001411513.1| type II and III secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154639|gb|ABS61856.1| type II and III secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 491 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 170/470 (36%), Positives = 262/470 (55%), Gaps = 49/470 (10%) Query: 32 ANAAVINISDVEIGKGKK-ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 +A ++ I IG+ + I +GLNK I+++P+ +DVLVS+P D VV + + YL Sbjct: 40 GDARLVKIDQGGIGQSSRSIVLGLNKAAIVELPIAARDVLVSNPAIVDAVVRTNKRTYLI 99 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G VGQ N G+Q+LNL+I + RD+ L +LR++ + I VE ++D VVL GM Sbjct: 100 GLAVGQTNAFFFNEAGQQILNLEIRVARDLTGLRESLRQYFPKARIDVESINDHVVLSGM 159 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V + D+ +A + + +Y + V+N+L I G++QV LKVT+AE++R+++ Sbjct: 160 VASATDASKAQDFAA---------RYIGGDKEHVLNMLGIEGKEQVMLKVTVAEMQRNVI 210 Query: 211 KQIGF-------------------QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 KQ+G S+ G S G + AAD + GD +V Sbjct: 211 KQLGVDLSTAANFGDFALRLATSNSFSVQGGSLG-GLTTAADAADPTRYQSGDVTV---- 265 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 ++ + ALER +RTLAEP LTAISG+SA F +GG+ T G + Sbjct: 266 -----DSAIRALERDGILRTLAEPNLTAISGESAKFLAGGEFPVPTSRDRDGNVQLEFKP 320 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGD---MPSYRVRKADTTVEL 362 +GV L+FTP VLS GRI L+I TEVSE V + D +P +VR+A+TT+EL Sbjct: 321 FGVGLNFTPVVLSEGRISLKISTEVSELTSEGAFVFQSTSADGVTVPGLKVRRAETTLEL 380 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 PSGG++V+AGLL D ++Q +G+P + +P+LG LFR+ + + ETE+ + TP+LV P Sbjct: 381 PSGGSLVMAGLLSDTMRQNIDGVPGVKDVPVLGQLFRSRDYQKNETELVVIVTPYLVDPT 440 Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 + ++L P D ++ D R+N YG + A+ + + +G +GFI Sbjct: 441 SRKNLVLPTDGFAPASDMDTILMGRLNATYGARGAAPGD-HSLQGPVGFI 489 >gi|146338123|ref|YP_001203171.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278] gi|146190929|emb|CAL74934.1| putative Pilus assembly protein cpaC; putative signal peptide [Bradyrhizobium sp. ORS278] Length = 500 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 163/450 (36%), Positives = 258/450 (57%), Gaps = 44/450 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++G+ K +++ +P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ Sbjct: 66 LALGVGKSVVIDLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDAQGQQI 125 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 DI ++RD+ L++ + +++I++E + D +VL G + ++Q+A EL+ Sbjct: 126 AAYDIAVKRDLNGARAALKQLLPNADIQIEGLGDGIVLTGSASSQIEAQQAGELAARLAG 185 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------IT 220 ++KV+N + + G DQV LKVT+AEV+R ++KQ+G S + Sbjct: 186 ----------GAEKVVNSITVRGRDQVMLKVTVAEVQRSVVKQLGIDLSGQLNYGTAVVK 235 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 ++S P F A +G VS + G S + L A+E A IRTLAEP LTAI Sbjct: 236 FANSNP---FTA-YGSNLVSNNAVSAAFGSTP--SVQATLRAMENAGVIRTLAEPNLTAI 289 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTVLSPGRIGLRIQTE 335 SG+SA+F +GG+ S T V T +G+ L+FTP VLS GRI +R+ TE Sbjct: 290 SGESATFIAGGEFPVPAGYSCDPTTHVCTTQISFKKFGISLNFTPIVLSEGRISMRVMTE 349 Query: 336 VSE-------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 VSE VN+ +PS + R+A+TT+E+PSGG + +AGL++ +Q Sbjct: 350 VSELSNENSITLSQAVSSTTVNSLTVPSIKTRRAETTLEIPSGGAMAMAGLIQQQTKQAI 409 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 G+P L ++P+LGALFR+ + +TE+ + TPF+V+ V+ +DLSRPDD ++ D +A Sbjct: 410 SGMPGLMQLPVLGALFRSRDYVNNQTELMVLVTPFVVRAVSQKDLSRPDDGFAAASDPQA 469 Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 +N+IYG +E G+NY+G GFI Sbjct: 470 DLLGSINRIYGVPGRTE-PGRNYRGTYGFI 498 >gi|39936740|ref|NP_949016.1| type II and III secretion system protein [Rhodopseudomonas palustris CGA009] gi|192292566|ref|YP_001993171.1| type II and III secretion system protein [Rhodopseudomonas palustris TIE-1] gi|39650596|emb|CAE29119.1| putative exporter protein, cpaC [Rhodopseudomonas palustris CGA009] gi|192286315|gb|ACF02696.1| type II and III secretion system protein [Rhodopseudomonas palustris TIE-1] Length = 480 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 160/440 (36%), Positives = 259/440 (58%), Gaps = 27/440 (6%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + IS+G+ K +++ +P D++DVLV+DP A+ VV S + Y+ G VGQ N++ Sbjct: 53 NAQSISLGIGKSMVIDLPRDIKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIVFFDSA 112 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G+Q+ DI + RD+ L L++ + ++ I+VE + D V+L+G V + D+Q+A +L+ Sbjct: 113 GRQIAAYDIAVTRDLNGLRTALKQTLPNAEIQVEGLGDGVMLNGWVTSPIDAQQAYDLAV 172 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 + + KKV+N + + G DQV LK+T+AEV+RDI+KQ+G S + Sbjct: 173 RLVGED----------KKVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLSANMAYGT 222 Query: 226 PSKSFAADFGGKFVSEGGDF-SVKGVLDRF----SFETVLHALERATAIRTLAEPTLTAI 280 +F + F GG S + +F S L A+E A +RTLAEP LTAI Sbjct: 223 AVVNF--NNSNPFTQSGGPLVSSNALTTKFGSLPSVTATLRAMESAGVVRTLAEPNLTAI 280 Query: 281 SGQSASFTSGGQHLYK---TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SG+ A+F +GG+ T ++ SVT +G++L+FTP V++ GRI L++ TEVS Sbjct: 281 SGEPATFLAGGEFPVPSGVTCTNGVCTPSVTFKKFGILLNFTPVVMTAGRISLKVMTEVS 340 Query: 338 E-----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 E VI N +PS + R+ ++TVE+PSGG++ +AGL+++ +Q G+P +++P Sbjct: 341 EVSSDNSVIISNM-SVPSIKTRRVESTVEIPSGGSLAMAGLIQEQTKQAINGMPGAAQLP 399 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 ILG LFR+ + +TE+ + TP++V+ VA +DLSRPDD ++ D ++ +NK+Y Sbjct: 400 ILGTLFRSRDYINRQTELMVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSINKLY 459 Query: 453 GPKEASEVEGQNYKGAIGFI 472 G +E + Y+G GFI Sbjct: 460 GVPGRTE-PARTYRGRFGFI 478 >gi|91977985|ref|YP_570644.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB5] gi|91684441|gb|ABE40743.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB5] Length = 480 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 160/438 (36%), Positives = 254/438 (57%), Gaps = 27/438 (6%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + +++G+ K +++ +P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+ Sbjct: 55 RPLALGIGKSVVIDLPRDIKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIVFFDSTGQ 114 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 Q+ DI + RD+ + LR+ I +++I+VE + D V+L G V T ++Q+A +L+ Sbjct: 115 QIAAYDIAVTRDLNGIRTALRQSIPNADIQVEGLGDGVMLIGSVATPIEAQQAADLAARL 174 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + KV+N + + G DQV LK+T+AEV+RDI+KQ+G +T S + + Sbjct: 175 AGDA----------SKVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVD--LTASMNYGT 222 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISG 282 F GG L S L A+E A +RTLAEP LTAISG Sbjct: 223 SVVKFSNTNPFTQSGGPLVANNALTTSFGSGPSVSATLRAMESAGVVRTLAEPNLTAISG 282 Query: 283 QSASFTSGGQHLYK---TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 + ASF +GG+ T ++S SVT +GV+L+FTP VL+ GRI L++ TEVSE Sbjct: 283 EPASFLAGGEFPVPSGVTCTNSLCTPSVTFKKFGVLLNFTPVVLTEGRISLKVSTEVSEV 342 Query: 339 ---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 I + +PS + R+ ++TVE+PSGG++ +AGL+++ +Q G+P ++++PILG Sbjct: 343 SSDNSIVIGGLSVPSIKTRRIESTVEIPSGGSLAMAGLIQEQTKQAINGLPGMTQLPILG 402 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG-P 454 LFR+ + +TE+ + TP++V+ VA +DLSRPDD ++ D ++ +N+IYG P Sbjct: 403 TLFRSRDYINRQTELMVMVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGNINRIYGVP 462 Query: 455 KEASEVEGQNYKGAIGFI 472 Q Y+G GFI Sbjct: 463 GRTG--PAQTYRGRFGFI 478 >gi|148258235|ref|YP_001242820.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1] gi|146410408|gb|ABQ38914.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1] Length = 497 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 169/480 (35%), Positives = 268/480 (55%), Gaps = 47/480 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 NP++A + A +D +I + +++G+ K +++ +P D++DVLV+DP A+ Sbjct: 36 NPALAPVIAADYHPAVTAAAADGQI-NARFLALGVGKSVVIDLPRDIKDVLVADPKIANA 94 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 VV S + Y+ G VGQ N++ G+Q+ DI ++RD+ L++ + +S+I++E Sbjct: 95 VVRSSQRAYIIGATVGQTNIVFFDAQGQQIAAYDIAVKRDLNGARAALKQLLPNSDIQIE 154 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + D++VL G + ++Q+A EL+ + KV+N + + G DQV LK Sbjct: 155 GLGDSIVLSGSAASQIEAQQAGELAARLAG----------GADKVVNSITVRGRDQVMLK 204 Query: 200 VTIAEVRRDILKQIGFQHS---------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 VT+AEV+R ++KQ+G S + ++S P F A +G VS + G Sbjct: 205 VTVAEVQRSVVKQLGIDLSGQLNYGTAVVKFANSNP---FTA-YGSNLVSNNAINASFG- 259 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT- 309 S + L A+E A IRTLAEP LTAISG+SA+F +GG+ S T V T Sbjct: 260 ---SSVQATLRAMENAGVIRTLAEPNLTAISGESATFIAGGEFPVPAGYSCDPTTHVCTT 316 Query: 310 ----HDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------------PVIGVNAGDMPSYR 352 +G+ L+FTP VL+ GRI LR+ TEVSE VN+ +PS + Sbjct: 317 QISFKKFGISLNFTPVVLAEGRISLRVMTEVSELSNENSITLSQAVTSSTVNSLTVPSIK 376 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+A+TT+E+PSGG + +AGL++ +Q G+P L ++P+LG LFR+ + +TE+ + Sbjct: 377 TRRAETTLEIPSGGAMAMAGLIQQQTKQAISGMPGLMQLPVLGTLFRSRDYVNNQTELMV 436 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 TPF+V+ VA +DLSRPDD ++ D +A +N+IYG E G++Y+G GFI Sbjct: 437 LVTPFVVRAVAQKDLSRPDDGFAAASDRQADLLGSINRIYGVPGRVE-PGRSYRGTYGFI 495 >gi|209886530|ref|YP_002290387.1| type II and III secretion system protein [Oligotropha carboxidovorans OM5] gi|209874726|gb|ACI94522.1| type II and III secretion system protein [Oligotropha carboxidovorans OM5] Length = 486 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 163/445 (36%), Positives = 258/445 (57%), Gaps = 29/445 (6%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + + +G++K +++ +P DV+DVLV+DP A+ VV S R Y+ G +VGQ N+I DG+ Sbjct: 49 RALRLGISKSLVVDLPRDVKDVLVADPKIANAVVRSSRRAYIIGASVGQTNIIFFDADGQ 108 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 QM D+ + RD+ + + + + S+I+VE + D VVL G ++Q+A EL+ Sbjct: 109 QMAAYDVAVTRDLNGIRTAIHQALPQSDIQVEGLGDGVVLSGTAANQAEAQQAYELAARL 168 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG------FQHSITG 221 + + + + ++N + + G DQV L+VT+AEV+R I+KQ+G F + Sbjct: 169 IGGPSK------AGELIVNNIAVRGRDQVMLRVTVAEVQRSIIKQLGVDLSGSFNYGTAV 222 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + +F A G + V + G S + L A+E A IRTLAEP LTAIS Sbjct: 223 VDFNNTNTFTA-LGRRLVDNNAVSAAFGNGTVPSVKATLRAMESAGVIRTLAEPNLTAIS 281 Query: 282 GQSASFTSGGQHLYKT-------VSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRI 332 G+SA+F +GG+ T STG S+ +G+ L+FTP VL+ GRI LR+ Sbjct: 282 GESATFIAGGEFPIPTGITCQTAAGGSTGPCQPSIAFKKFGISLNFTPVVLTEGRISLRV 341 Query: 333 QTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 TEVSE I V+ +PS + R+A+TT+E+PSGG++ +AGL++D +Q G+P L Sbjct: 342 MTEVSEVSSDNSISVSGLTIPSIKTRRAETTLEIPSGGSMAMAGLIQDQTKQAINGLPGL 401 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 +++P+LG LFR+ F +TE+ + TP++V+ VA +DLSRPDD ++ D ++ + Sbjct: 402 AQVPVLGTLFRSRDFINNQTELMVLVTPYVVRAVAQKDLSRPDDGFASASDPQSVLLGNI 461 Query: 449 NKIYG-PKEASEVEGQNYKGAIGFI 472 +IYG P+ V +Y+G GFI Sbjct: 462 TRIYGVPRRGGPVA--SYRGKYGFI 484 >gi|27375777|ref|NP_767306.1| hypothetical protein bll0666 [Bradyrhizobium japonicum USDA 110] gi|27348915|dbj|BAC45931.1| bll0666 [Bradyrhizobium japonicum USDA 110] Length = 505 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 173/503 (34%), Positives = 286/503 (56%), Gaps = 53/503 (10%) Query: 6 RTFFT--MMSIFLFSSNP--SVAKLP-----PIKEANAAVINISDVEIGKGKKISIGLNK 56 RTF+ M+++ L ++ S A+ P P++ + V ++ + K + +S+G+ K Sbjct: 18 RTFWAGAMLTLGLLAAPGLVSAAEAPVGDQAPLQAPDLGVASVGTIAPAKTRFLSLGVGK 77 Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 +++ +P +V+DVLV+DP A+ V+ S + Y+ G VGQ NV+ DG+Q+ DI + Sbjct: 78 SVVIDLPREVKDVLVADPKIANAVIRSAQRAYIIGGQVGQTNVVFFTADGQQVAAYDIAV 137 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 +RD+ + LR+ + +++E + D+V+L G V + ++Q+A E++ + Sbjct: 138 KRDLNGMRAALRQSL--PGVQIEGIGDSVMLTGSVSSPVEAQQAGEVAAKLVG------- 188 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------GPSKSF 230 S+KV+N + + G DQV LKV + EVRRDI+KQ+G S + ++ S F Sbjct: 189 ---GSEKVVNNIVVRGRDQVMLKVVVGEVRRDIVKQLGVDLSASLNAGTAVVNFNNSNPF 245 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + GG VS G V G+ + + A+E A +RTLAEP+LTAISG+SA+F + Sbjct: 246 SVS-GGPLVSSNG-LGVTGLAKGVATVNATMRAMETAGVMRTLAEPSLTAISGESATFIA 303 Query: 290 GGQ------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339 GG+ + V+ T +T +G+ L+FTP VLS GRI LR+ TEVSE Sbjct: 304 GGEFPIPGGYACDPVTHVC-TTQITYKKFGISLNFTPVVLSEGRISLRVMTEVSELSNQN 362 Query: 340 VIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 I V +PS + R+A+TT+E+PSGG++ +AGL++ +Q G+P + + Sbjct: 363 AISVTQAVSASQTSSVTIPSIQTRRAETTLEIPSGGSMAMAGLIQQQTKQAINGLPGVDQ 422 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 +PI+GALFR+ F ETE+ + TP++V+ VA ++LSRPDD ++ DA+ R+N+ Sbjct: 423 VPIIGALFRSQDFVNNETELMVIVTPYVVRAVAQKELSRPDDGFAPASDAQTALLGRMNR 482 Query: 451 IYG-PKEASEVEGQNYKGAIGFI 472 +YG + ++G +G GFI Sbjct: 483 LYGIARRVDPIDG--ARGDFGFI 503 >gi|328545279|ref|YP_004305388.1| Pilus assembly protein [polymorphum gilvum SL003B-26A1] gi|326415021|gb|ADZ72084.1| Pilus assembly protein [Polymorphum gilvum SL003B-26A1] Length = 470 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 177/450 (39%), Positives = 273/450 (60%), Gaps = 27/450 (6%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 ++++ E + + +GL + +++ V DV DVLVS+P AD VV S +++ G GQ Sbjct: 36 VHVAAGERATARLLRVGLGRSVVVNVAEDVADVLVSNPEIADAVVRSKNRVFVLGNKAGQ 95 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 AN++L G +G+++ + ++ +E D + L L+R + +S+I E ++ VVL G + D Sbjct: 96 ANLVLFGRNGRELASFNLRVEPDTSDLSALLKRVLPNSDIHAESINGNVVLSGTAVSAAD 155 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 +Q A +L+ F SG + + V+N++++AG+DQ+ LKVT+AEV R ++KQ+G Sbjct: 156 AQSAADLATRF-GGSG------AGALPVLNMISVAGKDQIQLKVTVAEVDRSVVKQLGVN 208 Query: 217 HSIT---GSSSGPSKSFAADF----GGKFVSEGG-DFSVKGVLDRFSFETVLHALERATA 268 S + G+ G S A+DF G + GG F G + + AL+R Sbjct: 209 LSGSIGIGNYRGTFNS-ASDFPVNPGITSQATGGIGFLAGGT----NVNAEIQALQRDGV 263 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 IRTLAEPTLTAISG++ASF +GG+ VS V +GV L FTP VLS GRI Sbjct: 264 IRTLAEPTLTAISGENASFLAGGEFPVP-VSQDNDTIGVEFKKFGVGLDFTPVVLSGGRI 322 Query: 329 GLRIQTEVSEPVI--GVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +R++TEVSE V G + + +VR+A++TVELPSGGT+V+AGLLK+ +Q G Sbjct: 323 SMRVKTEVSELTNDGAVTTGGIVISALKVRRAESTVELPSGGTLVMAGLLKETYKQAVNG 382 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP L ++P+LGALF++ F R++TE+ + TP++V PVA L+RPD ++ DA+ F Sbjct: 383 IPGLMQLPVLGALFKSRDFLRQQTELVVFVTPYVVTPVAANALTRPDQNFLPPSDAETVF 442 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 NR+NK++G A +V G Y G +G+IY+ Sbjct: 443 LNRINKLFGVSGA-KVPG-TYHGQVGYIYE 470 >gi|85713505|ref|ZP_01044495.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A] gi|85699409|gb|EAQ37276.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A] Length = 477 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 167/461 (36%), Positives = 259/461 (56%), Gaps = 53/461 (11%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + +S+G+ K +++ +P DV+DVLV+DP A+ VV S + Y+ G VGQ N+I G+ Sbjct: 32 QSLSLGIGKSVVVDLPRDVKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQ 91 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 Q+ DI + RD+ L L++ + ++ I+V+ + D V+L G V + ++Q+A +L+ Sbjct: 92 QISAYDIAVTRDLNGLRAALKQLLPNAAIKVDGLGDGVMLSGWVSSPIEAQQAGDLAARL 151 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------- 218 +KV+N + + G DQV LKVT+AEV R I+KQ+G S Sbjct: 152 AD----------GVQKVVNNIAVRGRDQVMLKVTVAEVARTIIKQMGIDLSANMNYGTAV 201 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------------SFETVLHALERA 266 + S+S P + G+ + G + S L S + L A+E A Sbjct: 202 VNFSNSNPFTAL-----GRPLVSGNNLSGSAGLTNLLPGQAGYPGVVPSVQATLRAMESA 256 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPT 321 IRTLAEP LTAISG+SA+F SGG+ S AT V +G+ L+FTP Sbjct: 257 GVIRTLAEPNLTAISGESATFISGGEFPIPAGYSCDPATRVCLTQIRFKKFGISLNFTPV 316 Query: 322 VLSPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 VL+ GRI LR+ TEVSE IG N+ +PS R R+A+TT+E+PSGG++ +A Sbjct: 317 VLTEGRISLRVMTEVSELSTENAMTITQTIG-NSLTVPSIRTRRAETTLEIPSGGSMAMA 375 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+++ +Q G+P L+++P+LGALFR+ + +TE+ + TP++V+ VA +DLSRPD Sbjct: 376 GLIQEQTKQAINGLPGLTQLPVLGALFRSRDYVNGQTELVVLVTPYVVRAVAQKDLSRPD 435 Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 D ++ D ++ +N+IYG E ++Y+G GFI Sbjct: 436 DGFADASDPQSDLLGSINRIYGAPGRVE-PARHYRGTYGFI 475 >gi|27376550|ref|NP_768079.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27349691|dbj|BAC46704.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 496 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 162/451 (35%), Positives = 255/451 (56%), Gaps = 46/451 (10%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +S+G+ K I++ +P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ Sbjct: 62 LSLGVGKSIVIDLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSAGQQI 121 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 DI ++RD+ + L++ + +S+I+++ + + +VL G ++Q+A +L+ Sbjct: 122 AAYDIAVKRDLNGVRAALKQILPNSDIQIDGLGEGIVLTGTAANPMEAQQANDLAARLAG 181 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------IT 220 + KV+N + + G DQV LKVT+AEV R I+KQ+G + +T Sbjct: 182 ----------GADKVVNSIVVRGRDQVMLKVTVAEVARSIVKQLGIDLTANLNYGTSVVT 231 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTA 279 S+S P + GK + +G + K G S + L A+E A IRTLAEP LTA Sbjct: 232 FSNSNPFTAL-----GKNLVDGNSLTTKFGATP--SVQATLRAMETAGVIRTLAEPNLTA 284 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTVLSPGRIGLRIQT 334 ISG+SA+F +GG+ + T V T +G+ L+FTP VL+ G+I LR+ T Sbjct: 285 ISGESATFIAGGEFPVPAGYACDPTTHVCTTQISFKKFGISLNFTPVVLTEGKISLRVMT 344 Query: 335 EVSE-------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 EVSE VN+ +PS + R+A+T++E+PSGG + +AGL++ +Q Sbjct: 345 EVSELSNENAITLSQAVTSTSVNSLTVPSIKTRRAETSLEIPSGGAMAMAGLIQQQTKQA 404 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 G+P L ++PILG LFR+ F TE+ + TP++V+ VA +DLSRPDD +S D + Sbjct: 405 VSGLPGLMQLPILGTLFRSRDFVNNATELVVIVTPYIVRAVAQKDLSRPDDGFSAPADPQ 464 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 +N+IYG +E G+NY+G GFI Sbjct: 465 VELLGNINRIYGVPGRTE-PGRNYRGTYGFI 494 >gi|75674499|ref|YP_316920.1| type II and III secretion system protein [Nitrobacter winogradskyi Nb-255] gi|74419369|gb|ABA03568.1| type II and III secretion system protein [Nitrobacter winogradskyi Nb-255] Length = 493 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 166/458 (36%), Positives = 258/458 (56%), Gaps = 54/458 (11%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + +S+G+ K +++ +P DV+DVLV+DP A+ VV S + Y+ G VGQ N+I G+ Sbjct: 55 QSLSLGIGKSVVVDLPRDVKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQ 114 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 Q+ DI + RD+ L L++ + ++ I+V+ + D V+L G V ++Q+A +L+ Sbjct: 115 QISAYDIAVTRDLNGLRTALKQLLPNAAIKVDGLGDGVMLSGWVSNPIEAQQAGDLAARL 174 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------- 218 ++KV+N + + G DQV LKVT+AEV R ++KQ+G S Sbjct: 175 ----------TDGAQKVVNNIAVRGRDQVMLKVTVAEVARTVIKQMGIDLSASMNYGTAV 224 Query: 219 ITGSSSGP---------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + +++ P + S AA FG V G V V L A+E A I Sbjct: 225 VNFTNANPFTALGRPLTNNSAAASFGSTMV---GGAPVPAV------TATLRAMESAGVI 275 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTVLS 324 RTLAEP LTAISG+SA+F SGG+ S AT V +G+ L+FTP VL+ Sbjct: 276 RTLAEPNLTAISGESATFISGGEFPIPAGFSCDPATRVCLTQIRFKKFGISLNFTPVVLT 335 Query: 325 PGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 GRI LR+ TEVSE +G N+ +PS R R+A+TT+E+PSGG++ +AGL+ Sbjct: 336 EGRISLRVMTEVSELSNENSMTLNQSVG-NSLTVPSIRTRRAETTLEIPSGGSMAMAGLI 394 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +Q+ G+P ++++P+LGALFR+ + +TE+ + TP++V+ VA +DLSRPDD + Sbjct: 395 HQQTKQVINGLPGIAQVPVLGALFRSRDYVNGQTELMVLVTPYVVRAVAQKDLSRPDDGF 454 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 + D ++ +N+IYG E ++Y+G GFI Sbjct: 455 ADASDPQSDLLGSLNRIYGAPGRVE-PARHYRGTYGFI 491 >gi|90425197|ref|YP_533567.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB18] gi|90107211|gb|ABD89248.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB18] Length = 492 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 159/448 (35%), Positives = 254/448 (56%), Gaps = 37/448 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++G++K +++ +P D++DVLV+DP A+ VV S + Y+ G +GQ N++ G Q+ Sbjct: 55 LALGVSKSVVIDLPRDIKDVLVADPKIANAVVRSAQRAYIIGAAIGQTNIVFFDAAGLQI 114 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFL 168 DI + RD+ + +++ + ++IRVE V +V+L G V + ++Q+A +L+ + Sbjct: 115 AAYDIAVTRDLNGIRAAMKQTLPGADIRVEGVGVKSVMLTGSVSSPIEAQQAGDLAARLV 174 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG------FQHSITGS 222 V+N + + G DQV LKVT+AEV+RDI+KQ+G + Sbjct: 175 D----------GPDNVVNSIAVRGRDQVMLKVTVAEVQRDIVKQLGVDLTARMNYGTAVV 224 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + S F A +G VS + G S L A+E A +RTLAEP LTAISG Sbjct: 225 NFNNSNPFTA-YGSNLVSGNATTASFGGGTTPSVTATLRAMESAGVVRTLAEPNLTAISG 283 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 +SA+F +GG+ S T V T +G+ L+FTP V+S GRI LR+ TEVS Sbjct: 284 ESATFVAGGEFPVPAGYSCDPVTHVCTTQISFKKFGISLNFTPVVMSEGRISLRVMTEVS 343 Query: 338 E-------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 E N+ +PS + R+A+TT+E+PSGG++ +AGL+++ +Q G Sbjct: 344 EISTDNSITLSQAVSTTTTNSITVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAMNG 403 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +P L+++P+LGALFR+ + TE+ + TP++V+ VA +DLSRPDD ++ D +A Sbjct: 404 LPGLAQLPVLGALFRSRDYVNRNTELLVLVTPYVVRAVAQKDLSRPDDGFAAASDPQADL 463 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472 +N+IYG + +E +NY+G GFI Sbjct: 464 IGNINRIYGVRGRTE-PAKNYRGTYGFI 490 >gi|299132286|ref|ZP_07025481.1| type II and III secretion system protein [Afipia sp. 1NLS2] gi|298592423|gb|EFI52623.1| type II and III secretion system protein [Afipia sp. 1NLS2] Length = 490 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 159/458 (34%), Positives = 252/458 (55%), Gaps = 53/458 (11%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + + +G++K +++ +P DV+DVLV+DP A+ VV S R Y+ G VGQ N+I D Sbjct: 53 NARSLRLGISKSLVVDLPRDVKDVLVADPKIANAVVRSSRRAYIIGAAVGQTNIIFFDAD 112 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G+QM D+ + RD+ + + + + S+I+VE + D VVL G ++Q+A EL+ Sbjct: 113 GQQMAAYDVAVTRDLNGIRTAIHQALPQSDIQVEGLGDGVVLTGSAANQAEAQQAYELAA 172 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF---------- 215 + + ++ V+N + + G DQV LKVT+AEV+R+I+KQ+G Sbjct: 173 RLIGGPSK------ANDLVVNNITVRGRDQVMLKVTVAEVQRNIVKQLGVDLSGKFSYGT 226 Query: 216 ---------QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 Q S G + P + + FG S + L A+E A Sbjct: 227 AVVDFNNANQFSALGHALAPDNAISTSFGSAP----------------SVKATLRAMESA 270 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHF 318 +RTLAEP LTAISG+SA+F +GG+ T +SS S+ +G+ L+F Sbjct: 271 GVVRTLAEPNLTAISGESATFIAGGEFPIPTGITCQTAAGTSSNCQPSIAFKKFGISLNF 330 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TP VL+ GRI LR+ TEVSE + V+ +PS + R+A+TT+E+PSGG++ +AGL+ Sbjct: 331 TPVVLTEGRISLRVMTEVSEISNDNSLTVSGMTIPSIKTRRAETTLEIPSGGSMAMAGLI 390 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++ +Q G+P L+++P+LG LFR+ F +TE+ + TP++V+ VA +DLSRPDD + Sbjct: 391 QEQTKQAINGLPGLAQLPVLGTLFRSRDFINNQTELMVLVTPYVVRAVAQKDLSRPDDGF 450 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 + D + + +IYG +Y+G GFI Sbjct: 451 ASASDPQTVLLGNITRIYGVPRREGQASSSYRGKYGFI 488 >gi|323137425|ref|ZP_08072503.1| type II and III secretion system protein [Methylocystis sp. ATCC 49242] gi|322397412|gb|EFX99935.1| type II and III secretion system protein [Methylocystis sp. ATCC 49242] Length = 504 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 165/467 (35%), Positives = 251/467 (53%), Gaps = 50/467 (10%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 ++IS+G+ K II+ +P D +V+V +P AD +V S R +Y+ G + GQ + + G+ Sbjct: 46 RRISMGVGKSIIVDLPRDATEVVVGNPKVADAIVRSARKLYIMGMDAGQTTIFAVDSSGR 105 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 Q+ NL+I I RD+ L L+ + SNI V+D ++L G V + ++ RAV++++ F Sbjct: 106 QVANLEISIGRDVGELAPLLKAALPKSNITARTVNDIIILTGTVSSAGEALRAVDIAKGF 165 Query: 168 LS---------------QSGRNQYAN---SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 S Q+ +Q S+ V+N L I GE+QV LKVT+AEV R + Sbjct: 166 ASRAMGGGAGGGGGVAGQASNSQVGGVGGSADGNVINALTIRGEEQVMLKVTVAEVERKV 225 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--------ETVLH 261 +KQ+GF G ++ GK V E F++ + + L Sbjct: 226 IKQLGFSAQAGG------ETILNGSWGKLVQEN-PFAINPTMSNSALIINGPNNTNATLK 278 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSVTTHD 311 A ER R LAEPT+TA+SG++A GG+ S T + +T Sbjct: 279 AFERYGVSRILAEPTVTAVSGEAAKMLVGGEIAVPGSGSCTFFTNGGGQPICSPGITFKS 338 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELPSGG 366 YGV L+F P VLS GRI L + EV+E + N +P ++ RK +T+VELPSGG Sbjct: 339 YGVSLNFVPIVLSEGRIHLHLAAEVTEVDLQNTFTYANVA-VPGFKTRKNETSVELPSGG 397 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +I AGLL Q G+P L +PILGALFR+ + R ETE+ + TP++V+P++ +D Sbjct: 398 SIATAGLLTQKSSQAISGLPGLLNLPILGALFRSRDYLRNETELLVIVTPYIVRPLSAQD 457 Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 +SRPDD ++ D + + RVN+IY + ++ QN+KG IGFI+ Sbjct: 458 VSRPDDGFADASDPQGWLLGRVNRIYSTRNNPQLM-QNFKGRIGFIH 503 >gi|316933039|ref|YP_004108021.1| type II and III secretion system protein [Rhodopseudomonas palustris DX-1] gi|315600753|gb|ADU43288.1| type II and III secretion system protein [Rhodopseudomonas palustris DX-1] Length = 478 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 150/437 (34%), Positives = 256/437 (58%), Gaps = 25/437 (5%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + +++G+ K +++ +P D++DVLV+DP A+ V+ S + Y+ G VGQ N++ G+ Sbjct: 53 QSVALGIGKSMVIDLPRDIKDVLVADPKIANAVIRSAQRAYIIGAAVGQTNIVFFDSTGR 112 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 Q+ DI + RD+ + L++ + ++I+VE + + V+L+G V + ++Q+A +L+ Sbjct: 113 QIAAYDIAVTRDLNGIRTALKQTLPTADIQVEGLGEGVMLNGSVASPIEAQQAFDLAARL 172 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + KKV+N + + G DQV LK+T+AEV+RDI+KQ+G S + Sbjct: 173 VGDD----------KKVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLSANMAYGTAV 222 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLD-RF----SFETVLHALERATAIRTLAEPTLTAISG 282 +F + F G L +F S L A+E A +RTLAEP LTAISG Sbjct: 223 VNF--NNTNPFTQSGSALVPNNALTTKFGSLPSVTATLRAMESAGVVRTLAEPNLTAISG 280 Query: 283 QSASFTSGGQHLYK---TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 + A+F +GG+ T ++ SV +G++L+FTP V++ GRI L++ TEVSE Sbjct: 281 EPATFLAGGEFPVPSGVTCTNGVCTPSVVFKKFGILLNFTPVVMTAGRISLKVMTEVSEV 340 Query: 339 ---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + +N+ +PS + R+ ++T+E+PSGG++ +AGL+++ +Q G+P +++PILG Sbjct: 341 SSDNAVVINSLSVPSIKTRRVESTLEIPSGGSLAMAGLIQEQTKQAINGMPGAAQLPILG 400 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 LFR+ + +TE+ + TP++V+ VA +DLSRPDD ++ D ++ +NK+YG Sbjct: 401 TLFRSRDYINRQTELMVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSLNKLYGAP 460 Query: 456 EASEVEGQNYKGAIGFI 472 SE + Y+G GFI Sbjct: 461 GRSE-PARTYRGRFGFI 476 >gi|300021854|ref|YP_003754465.1| type II and III secretion system protein [Hyphomicrobium denitrificans ATCC 51888] gi|299523675|gb|ADJ22144.1| type II and III secretion system protein [Hyphomicrobium denitrificans ATCC 51888] Length = 550 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 181/507 (35%), Positives = 267/507 (52%), Gaps = 63/507 (12%) Query: 27 PPIKEANAAVINISDVE-IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 P + +++ IS+ E + K I IGL K ++++ P V+DV+ S+P D VV S Sbjct: 48 PEFSKNTQSIVRISESEGLPVRKSIKIGLGKSVLIEFPNGVRDVMASNPAVVDAVVLSSN 107 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 ++L GK GQ+N + G+Q+ +++ ++++ LEM LRR I S I+VE ++ T Sbjct: 108 RVFLLGKAPGQSNAFFFSNKGEQLALIELNVDQEGDGLEMLLRRVIPGSEIKVETLNQTA 167 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS--------------------SKKVM 185 +L G V++ DS RA ++ F+SQ N +N S K V+ Sbjct: 168 ILTGRVKSPSDSARASRIAAQFMSQMIANWASNVSLTSSGSGQQNKAGEVKDADDVKSVI 227 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIG-----------FQHSITGSSSGP-------- 226 NLL + E+QV LKVT+AEV+R +LKQ+G F ++ ++ P Sbjct: 228 NLLTVEAEEQVMLKVTVAEVKRTLLKQLGINLGGVLSSGSFSTTLLTENAFPISTAQGLG 287 Query: 227 --------SKSFAADFGGKFVS-----EGGDFSVKGVLD-----RFSFETVLHALERATA 268 + + AA G+ + G F G++ R + ++ + ALER Sbjct: 288 SLPTFGVGTAASAACAVGQICAFNPGPATGAFGNSGLVSGWGNSRNNIQSAVRALERDGL 347 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 I+TLAEP LTAISG+ A F +GG+ Y T V + TG ++V +GV L FTP VL+ GR Sbjct: 348 IKTLAEPNLTAISGEPAEFLAGGEVPYVTGVDTQTGVSAVAFKKFGVQLAFTPVVLTEGR 407 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I L+I T VS+ I P + R+A T VELPSGG++ LAGL+ QQ +G+P Sbjct: 408 ISLKIDTSVSD--ISQYVAGNPVFDTRQAKTVVELPSGGSLALAGLISTKTQQNIDGLPG 465 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 IPILG LFR+ F +E+E+ + TP+LV+PVA + LS P D D KA F Sbjct: 466 AKDIPILGTLFRSRDFQNDESELVVIVTPYLVQPVARQQLSAPTDGLYPATDLKADFLGH 525 Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIYK 474 +N+IYG E G KG GFI + Sbjct: 526 LNRIYGKSEVQPSGG--LKGDYGFIVE 550 >gi|296444395|ref|ZP_06886360.1| type II and III secretion system protein [Methylosinus trichosporium OB3b] gi|296258042|gb|EFH05104.1| type II and III secretion system protein [Methylosinus trichosporium OB3b] Length = 485 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 174/493 (35%), Positives = 267/493 (54%), Gaps = 37/493 (7%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 R+L T T +++ S P+VA A + SD + +++++G+ K II+ Sbjct: 6 RHLIPTLATALALVGAGSLPAVA-------APQSWGVESDSDAIMSRRVAMGVGKSIIVD 58 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 +P D +++V +P A+ VV S R +Y+ G GQ + + G+Q+ NL+I I RD+ Sbjct: 59 LPADAAEIVVGNPKVANAVVRSTRKLYIMGVETGQTTIFALDRSGRQIANLEISIGRDVG 118 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L L + +SNI V+D ++L G V + ++QRAV++++ F ++S ++ Sbjct: 119 ELGPLLHAALPNSNISARTVNDAIILTGTVDSASEAQRAVDIAKGFAARSASASAQSAGG 178 Query: 182 KK----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 V+N L I +DQV LKVT+AEV R +LKQ+G I+ S G ++ G+ Sbjct: 179 SPADGLVVNALVIRTQDQVMLKVTVAEVERRVLKQLG----ISAQSGG--ETLLKGGWGQ 232 Query: 238 FVSEGGDFSVKGVLDRFSFE--------TVLHALERATAIRTLAEPTLTAISGQSASFTS 289 V + F+V L S L A ER R LAEPT+TAISG+SA FT Sbjct: 233 LVQQN-PFAVNSALTASSLTINGNNGSTATLQAYERYGVSRVLAEPTVTAISGESAKFTV 291 Query: 290 GGQHLYKTVSSSTGATSVTT------HDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339 GG+ SS +++ + YGV L+FTP VL+ GRI L + TEV+E Sbjct: 292 GGEIAVPGNSSCIAGSTLCSSVGIVFKPYGVSLNFTPVVLAQGRILLHLATEVTEIDYQA 351 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 N +P ++ RK +T+VELPSGG+I AGLL Q G+P L +P+LGALFR Sbjct: 352 AQAYNGVTVPGFKTRKNETSVELPSGGSIATAGLLTQKSDQAINGLPGLINLPVLGALFR 411 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + + R ETE+ I TP++ + ++ RD++RPDD ++ D +A+ RVN++Y + + Sbjct: 412 SRDYQRNETELLIVVTPYIARALSARDVTRPDDGFADASDPQAWLLGRVNRLYANPQHPQ 471 Query: 460 VEGQNYKGAIGFI 472 Q KG IGFI Sbjct: 472 AAPQ-LKGRIGFI 483 >gi|146342078|ref|YP_001207126.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278] gi|146194884|emb|CAL78909.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. ORS278] Length = 492 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 162/481 (33%), Positives = 273/481 (56%), Gaps = 50/481 (10%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 NP++A + ++ +A +++ ++ +S+G+ K +++ P DV+DVLV+DP A+ Sbjct: 32 NPALAPVKAAEDRDAPTVSVGSSKV---HYLSLGIGKSVVVDFPQDVKDVLVADPKIANA 88 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 VV S + Y+ G +GQ NV+ +G+Q+ DI I+RD+ + L + I ++++ Sbjct: 89 VVRSAKRAYIIGAAIGQTNVVFFDGEGQQVAAYDIAIKRDLNGVRQALSQSI--PGVKID 146 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 V D V+L G V + ++Q+A E++ + + KV+N + + G DQV LK Sbjct: 147 GVGDGVILTGSVSSPVEAQQAGEIAARLVG----------GADKVVNSIVVRGRDQVMLK 196 Query: 200 VTIAEVRRDILKQIGFQHS---------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 V ++EVRR+I+KQ+G S + + + P ++ GK ++ G S G Sbjct: 197 VNVSEVRREIVKQLGIDLSASMTYGTAVVNFNQTNPFTAY-----GKSLAAGNGLSAIGG 251 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---TVSSSTG--AT 305 + S + A+E A ++TLAEP LTAISG+SA+F +GG+ + TG +T Sbjct: 252 GNLSSVSATMRAMETAGVVKTLAEPNLTAISGESATFIAGGEFPVPGGYSCDPKTGLCST 311 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGD---MPSYR 352 SV +G+ L+FTP VLS GRI LR+ TEVSE N+ +P+ R Sbjct: 312 SVMFKKFGISLNFTPVVLSEGRISLRVMTEVSELSNDNAITLSYATSANSASSVTIPAIR 371 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+A+TT+E+PSGG++ +AGL+++ +Q G+P L+++P+LG LFR+ + ETE+ + Sbjct: 372 TRRAETTLEIPSGGSMAMAGLIQNQTKQAINGLPGLNQLPVLGQLFRSQDYVNNETELMV 431 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG-PKEASEVEGQNYKGAIGF 471 TP++V+ VA ++LSRPDD ++ D+++ R+N++YG + V GQ GF Sbjct: 432 LVTPYVVRAVAQKELSRPDDGFAPATDSESALLGRMNRLYGVAAKVDAVTGQ--PAGFGF 489 Query: 472 I 472 I Sbjct: 490 I 490 >gi|148256957|ref|YP_001241542.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1] gi|146409130|gb|ABQ37636.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1] Length = 489 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 164/480 (34%), Positives = 274/480 (57%), Gaps = 53/480 (11%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 +L R F T +I L + NP++A + ++ + V+++ ++ +S+G+ K +++ Sbjct: 14 WLVRAFSTAAAIGL-AINPALAPVHAAEDRDTPVVSVGSSKV---HYLSLGIGKSVVVDF 69 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 P DV+DVLV+DP A+ VV S R Y+ G VGQ NV+ +G+Q+ DI I+RD+ Sbjct: 70 PQDVKDVLVADPKIANAVVRSARRAYIIGAAVGQTNVVFFDGEGQQVAAYDIAIKRDLNG 129 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + L + I ++++ V D V+L G V + ++Q+A E++ + S Sbjct: 130 VRQALSQSI--PGVKIDGVGDGVILTGSVSSPVEAQQAGEIASRLVG----------GSD 177 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------ITGSSSGPSKSFAAD 233 KV+N + + G DQV LKV ++EVRR+I+KQ+G S + +++ P ++ Sbjct: 178 KVVNSIVVRGRDQVMLKVNVSEVRREIVKQLGIDLSASMTYGTAVVNFNNTNPFTAY--- 234 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ- 292 GK + G +V G S + A+E A +TLAEP LTAISG+SA+F +GG+ Sbjct: 235 --GKSLVNGNALNVSG-GGLSSVSATMRAMETAGVTKTLAEPNLTAISGESATFIAGGEF 291 Query: 293 ------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIG 342 + T T TS+T +G+ L+FTP VLS GRI LR+ TEVSE I Sbjct: 292 PVPGGYNCDPTTRVCT--TSITYKKFGISLNFTPVVLSEGRISLRVMTEVSELSNDNAIT 349 Query: 343 VNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 V+ +P+ R R+A+TT+E+PSGG++ +AGL+++ +Q G+P + ++P+ Sbjct: 350 VSYALTSTSSSSVTIPAIRTRRAETTLEIPSGGSMAMAGLIQNQTKQAINGLPGVDQLPV 409 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG LFR+ + ETE+ + TP++V+ VA ++L+RPDD ++ D+++ R+N++YG Sbjct: 410 LGQLFRSKDYVNNETELMVLVTPYVVRAVAQKELARPDDGFAPATDSESALLGRMNRLYG 469 >gi|115525749|ref|YP_782660.1| type II and III secretion system protein [Rhodopseudomonas palustris BisA53] gi|115519696|gb|ABJ07680.1| type II and III secretion system protein [Rhodopseudomonas palustris BisA53] Length = 486 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 158/445 (35%), Positives = 263/445 (59%), Gaps = 37/445 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++G++K +++ +P D++DVLV+DP A V+ S + Y+ G +VGQ N++ G+Q+ Sbjct: 55 LALGISKSVVIDLPRDIKDVLVADPKIATAVIRSAQRAYIIGASVGQTNIVFFDAAGQQI 114 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQRAVELSETFL 168 DI + RD+ + L++ + +++IRVE V V+L G V + ++Q+A E++ L Sbjct: 115 AAYDIAVTRDLNGIRAALKQTLPNTDIRVEGVGPKGVLLSGSVSSPVEAQQAGEVAAR-L 173 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 ++ N V+N + + G DQV LKVT+AEV+RDI+KQ+G S + + Sbjct: 174 AEGAEN---------VVNSIAVRGRDQVMLKVTVAEVQRDIIKQMGIDLSASMTYGTAVV 224 Query: 229 SFA-----ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 +F FG + V+ G+ + L A+E A +RTLAEP LTAISG+ Sbjct: 225 NFNNTNPFTAFGRQLVT--GNSLATSFGGGPTVTATLRAMESAGVVRTLAEPNLTAISGE 282 Query: 284 SASFTSGGQ------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SA+F +GG+ + Y V+ G T + +G+ L+FTP V++ GRI LR+ TEVS Sbjct: 283 SATFIAGGEFPVPSGYNYDPVTH-VGTTQIAFKKFGISLNFTPVVMTEGRISLRVMTEVS 341 Query: 338 EP------VIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E + + GD +PS + R+A+TT+E+PSGG++ +AGL+++ +Q G+P + Sbjct: 342 ELSNDNSITLTQSNGDGLTVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGM 401 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++IP+LG+LFR+ + +TE+ + TP++V+ VA +DLSRPDD ++ D + + Sbjct: 402 AQIPVLGSLFRSRDYVNRQTELMVLVTPYVVRAVAQKDLSRPDDGFAAVSDPQGDLLGSI 461 Query: 449 NKIYG-PKEASEVEGQNYKGAIGFI 472 N+IYG P + +NY+G GFI Sbjct: 462 NRIYGVPGKPG--PDRNYRGTYGFI 484 >gi|254473733|ref|ZP_05087128.1| type II and III secretion system protein [Pseudovibrio sp. JE062] gi|211957119|gb|EEA92324.1| type II and III secretion system protein [Pseudovibrio sp. JE062] Length = 456 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 171/484 (35%), Positives = 280/484 (57%), Gaps = 49/484 (10%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 M++ L + P +A EA V + V++ +++++G + I+L +V+DVLV Sbjct: 1 MALTLTVTAPQLATAQTNFEATVEVTSQHSVKV---RQLNVGEGRSIVLNTNEEVRDVLV 57 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 S+P AD VV + +++FG GQA+++L G+ GKQ+ + ++ ++ D + L ++R + Sbjct: 58 SNPKIADAVVRTRNRVFVFGNETGQASLVLFGNGGKQLASFNLNVQPDPSGLIELIQRLL 117 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 +S I ++V+++VVL G + ++Q+A +++ F+ + KK++N + +A Sbjct: 118 PNSAINADIVNESVVLSGTAISALEAQQAYDIALKFVG---------NDDKKIVNTIAVA 168 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------GPSKSFAADFG 235 +DQV LKVT+AEV R +KQ+G S+ G+ S PS A F Sbjct: 169 EKDQVQLKVTVAEVERTTIKQLGV--SLQGALSIGALDVKFNTSPAYNINPSVVNAGLFQ 226 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G+ GG S + ALER ++TLAEPTL A+SG++ASF +GG+ Sbjct: 227 GQLPIGGG-----------SIVPTIKALERDGVMKTLAEPTLVAVSGENASFLAGGEFPI 275 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPS 350 V+ S+ +GV L FTP VLS GRI LRI+TEVSE V A + + Sbjct: 276 P-VAYEDNKISLEFKPFGVGLDFTPVVLSEGRIKLRIKTEVSELSSEGAVNLAGAISVSA 334 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +VR+A++T+ELPSGGT+V+AGLLK + Q +GIP L +PILG +F++ + ++TE+ Sbjct: 335 LKVRRAESTLELPSGGTLVMAGLLKHNYGQEIDGIPGLKDVPILGTMFKSRDYINKQTEL 394 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 I TP++V+PVA ++RPDD+++ D F N++++IY +A V+G +Y G IG Sbjct: 395 VIFVTPYVVRPVARSQIARPDDNFAAPSDQSTIFLNQLSRIYRSTDAP-VKG-SYHGKIG 452 Query: 471 FIYK 474 +IY+ Sbjct: 453 YIYE 456 >gi|307943145|ref|ZP_07658490.1| type II and III secretion system protein [Roseibium sp. TrichSKD4] gi|307773941|gb|EFO33157.1| type II and III secretion system protein [Roseibium sp. TrichSKD4] Length = 482 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 166/476 (34%), Positives = 271/476 (56%), Gaps = 45/476 (9%) Query: 22 SVAKLPPIKEANAAV---INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 S+A +P A A ++++ E + +S+G+ + +I+ V DVLVS+P AD Sbjct: 29 SLAGVPEPAAAQGAFEKRVHVASGERVSSRLLSVGVGRSVIIDTAEAVADVLVSNPGVAD 88 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 VV +P +++ G GQAN++L G+++ + ++ +E D + L +++++ SNI Sbjct: 89 AVVRTPNRIFVLGNKAGQANLVLFSRTGRELASFNLRVEPDTSDLVRFIQKYVPGSNIEA 148 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + ++ ++L G D+QRA +L+ + + + ++N++ + GEDQV L Sbjct: 149 QSLNGNIILSGTAANAADAQRAADLAARYAGDGKK-------ATDILNMITVDGEDQVHL 201 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---GGDFSVKGVLDRFS 255 KVT+AEV R+++KQ+G Q + G K +FG F ++ SV R + Sbjct: 202 KVTVAEVDREVIKQLGVQLN------GEIK--IGNFGFGFANDTSFNAGTSVAQQTTRLA 253 Query: 256 FETV---------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 E V + AL+R ++TLAEPTLTAISG++ASF +GG+ +S + Sbjct: 254 GELVSGGTTIGAEVKALQREGIVKTLAEPTLTAISGENASFLAGGEFPIP-ISQDGNEVT 312 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVEL 362 V +GV L FTP VLS GRI L+I TEVSE + + +P+ +VR+A++T+EL Sbjct: 313 VEFKKFGVGLDFTPIVLSGGRISLKITTEVSELSSDGAVNIGTLTIPALKVRRAESTLEL 372 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 PSGGT+V+AGLL++ +Q G+P L +P+LG+LF++ F R +TE+ + TP++V P+ Sbjct: 373 PSGGTLVMAGLLQESYRQSVNGVPGLMNLPVLGSLFKSRDFLRSQTELVVFVTPYIVNPI 432 Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN----YKGAIGFIYK 474 A + RPD + + +D++ F NR+NKIY GQN Y G +GFIYK Sbjct: 433 AASKVQRPDKNLAPANDSETLFLNRLNKIY------RANGQNAQAPYHGQVGFIYK 482 >gi|170740621|ref|YP_001769276.1| type II and III secretion system protein [Methylobacterium sp. 4-46] gi|168194895|gb|ACA16842.1| type II and III secretion system protein [Methylobacterium sp. 4-46] Length = 501 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 262/463 (56%), Gaps = 25/463 (5%) Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84 K P I A V++I E ++I + + +++ +P D ++V V++P A+ VV S Sbjct: 47 KAPAIA---APVLSIGPQEAEIARRIDLTQGRSLVIDLPRDAKEVFVANPKVANAVVRST 103 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 R +++ G G ++ ++ +G+Q+ +LD+ + RD+ L TL + + V D+ Sbjct: 104 RKVFIIGVENGATSIFVMDAEGRQIASLDVTVGRDLNILRQTLATSLPSARFEVRPAGDS 163 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 ++L G V + ++Q+A++++ F+ +G + V+N + I G+DQV L+VT+ E Sbjct: 164 ILLSGTVNSATEAQQALDIANAFVGIAG----GTVTRGAVINNITIRGKDQVMLRVTVVE 219 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR---FSFETVLH 261 V R +LKQ G S++GS SG + + A F G+ ++G ++ S + L Sbjct: 220 VSRTVLKQFGV--SLSGSWSGLNLTNATQFALNGDRGLGNL-IEGTINGGAGASLKATLK 276 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----VTTHDYGVVLH 317 A E+A R LAEPTLTAISG+SA FT+GG+ + S T A + +T YGVVL+ Sbjct: 277 AFEQAGVSRILAEPTLTAISGESAKFTAGGEIAVPSGLSCTTANNCIPGITFKQYGVVLN 336 Query: 318 FTPTVLSPGRIGLRIQTEVSEP--------VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 FTP VLS RI +R+ T+V+E IG + +P + +RK++TT+EL SG TI+ Sbjct: 337 FTPVVLSENRISIRVGTDVTEIDQQNAYSYNIGTTSTSVPGFTIRKSETTIELASGATIM 396 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 AGL++ + G+P L +P+LGALFR+ + R+ETE+ I TP++ K + ++ R Sbjct: 397 TAGLIQQKNKAAVMGLPALMNLPVLGALFRSRDYQRDETELMIMVTPYIAKAMDPGEVKR 456 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 PDD + D +A R N++YG A+ + + Y+G GFI Sbjct: 457 PDDGFVDATDGQAILLGRFNRLYGVVGAAPLAPKAYRGKFGFI 499 >gi|114568970|ref|YP_755650.1| type II and III secretion system protein [Maricaulis maris MCS10] gi|114339432|gb|ABI64712.1| type II and III secretion system protein [Maricaulis maris MCS10] Length = 491 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 260/467 (55%), Gaps = 51/467 (10%) Query: 43 EIGKG---KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 E G G + + + L+K ++ +PVDV DVLV++P + +V +PR Y+ G +GQ N Sbjct: 41 EPGNGPVSETLDLPLSKAAVVHLPVDVADVLVTNPAVVEAIVRTPRRAYIMGMGIGQTNA 100 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 +G+ +L+LD+ +ERD++ L+ ++ RF+ ++ I VE ++D +VL G + D+ Sbjct: 101 FFFDANGQLILDLDLRVERDLSPLQESIDRFLPNARIEVEAMNDHIVLSGRAPSASDADA 160 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A+ +++ ++ + +++++++ +QV L+V I E++R I++Q+G S Sbjct: 161 ALRIAQRWVD----------NPDNILSMISVEAREQVMLRVRIVEMQRTIVRQLGVNLST 210 Query: 220 TGSSS--GPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFET--------VLHALERAT 267 G++ G S + DF G+F+ GG +LD S T +L A+ER Sbjct: 211 AGTTGEFGFGVSTSPDFSRVGRFL--GG---TSAMLDWVSGNTGGVESVSAMLQAMERVG 265 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +RTLAEP LTAI+G+SA+F +GG+ G + +GV L FTP VLS GR Sbjct: 266 LVRTLAEPNLTAITGESANFLAGGEFPVPVGRDRDGNIIIEYKPFGVGLGFTPVVLSEGR 325 Query: 328 IGLRIQTEVSE-------------------PVIGVNAG-DMPSYRVRKADTTVELPSGGT 367 I LRI TEVSE VIG G +P+ V +A+TTVELPSGG+ Sbjct: 326 ISLRISTEVSELTSQGSLTFQSNNVLDDDGNVIGTVPGLTIPALNVNRAETTVELPSGGS 385 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +VLAGL++++ +Q +G+P + +P+LG+LFR+ + +ETE+ + TP+LV P L Sbjct: 386 LVLAGLIQEETRQNLDGVPGVQNLPVLGSLFRSRDYENQETELVVLVTPYLVDPTNPNQL 445 Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 P D + +A F R+N+ Y S+ + + G +GF+++ Sbjct: 446 QTPADGFRNASEASGLLFGRINRAYS-VPGSDTGDRGWSGPVGFLFE 491 >gi|163851903|ref|YP_001639946.1| type II and III secretion system protein [Methylobacterium extorquens PA1] gi|163663508|gb|ABY30875.1| type II and III secretion system protein [Methylobacterium extorquens PA1] Length = 502 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 158/470 (33%), Positives = 250/470 (53%), Gaps = 43/470 (9%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+ I E +++ + + +I+ +P D ++V V++P A+ VV S R ++L G + G Sbjct: 41 VLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAVVRSSRKLFLIGIDNG 100 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 ++ ++ +G+Q+ LD+ I RDI L +L++ + V+ V D++VL G V + Sbjct: 101 ATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDVKAVGDSLVLSGSVNSTS 160 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 ++Q+A++++ F+ + A + V+N L I +DQV ++VT+ EV R +LKQ G Sbjct: 161 EAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMIRVTVVEVARTVLKQFGI 218 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------------LDRFSFETVLHA 262 S S+ P GG F++ F + G FSF+ L A Sbjct: 219 STSGNWSALNP-------LGGNFLTNNTGFPLTGSRSPDANALTASVQTGGFSFKATLRA 271 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGAT-----SVTTH 310 E+A R LAEPTLTAISG+SA FT+GG+ TVS T + ++T Sbjct: 272 FEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVSQGCVVALTYK 331 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE--P------VIGVNAGDMPSYRVRKADTTVEL 362 YGV L FTP V++ RI +RI T+V + P + +P R ++TTVEL Sbjct: 332 PYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTTKRSSETTVEL 391 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ I TP++ +P+ Sbjct: 392 ASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMIMVTPYIAQPM 451 Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 R + RPDD + D +A R+NKIYG + G Y+G +GFI Sbjct: 452 EARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500 >gi|254561621|ref|YP_003068716.1| pilus assembly protein [Methylobacterium extorquens DM4] gi|254268899|emb|CAX24860.1| putative pilus assembly protein; putative precursor [Methylobacterium extorquens DM4] Length = 502 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 158/470 (33%), Positives = 250/470 (53%), Gaps = 43/470 (9%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+ I E +++ + + +I+ +P D ++V V++P A+ VV S R ++L G + G Sbjct: 41 VLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAVVRSSRKLFLIGIDNG 100 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 ++ ++ +G+Q+ LD+ I RDI L +L++ + V+ V D++VL G V + Sbjct: 101 ATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDVKAVGDSLVLSGSVNSTS 160 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 ++Q+A++++ F+ + A + V+N L I +DQV ++VT+ EV R +LKQ G Sbjct: 161 EAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMIRVTVVEVARTVLKQFGI 218 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------------LDRFSFETVLHA 262 S S+ P GG F++ F + G FSF+ L A Sbjct: 219 STSGNWSALNP-------LGGNFLTNNTGFPLTGSRSPDANALTASVQTGGFSFKATLRA 271 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGAT-----SVTTH 310 E+A R LAEPTLTAISG+SA FT+GG+ TVS T + ++T Sbjct: 272 FEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVSQGCVVALTYK 331 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE--P------VIGVNAGDMPSYRVRKADTTVEL 362 YGV L FTP V++ RI +RI T+V + P + +P R ++TTVEL Sbjct: 332 PYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTTKRSSETTVEL 391 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ I TP++ +P+ Sbjct: 392 ASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMIMVTPYIAQPM 451 Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 R + RPDD + D +A R+NKIYG + G Y+G +GFI Sbjct: 452 EARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500 >gi|240139026|ref|YP_002963501.1| putative pilus assembly protein; putative precursor [Methylobacterium extorquens AM1] gi|240008998|gb|ACS40224.1| putative pilus assembly protein; putative precursor [Methylobacterium extorquens AM1] Length = 502 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 158/470 (33%), Positives = 250/470 (53%), Gaps = 43/470 (9%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+ I E +++ + + +I+ +P D ++V V++P A+ VV S R ++L G + G Sbjct: 41 VLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAVVRSSRKLFLIGIDNG 100 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 ++ ++ +G+Q+ LD+ I RDI L +L++ + V+ V D++VL G V + Sbjct: 101 ATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDVKAVGDSLVLSGSVNSTS 160 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 ++Q+A++++ F+ + A + V+N L I +DQV ++VT+ EV R +LKQ G Sbjct: 161 EAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMIRVTVVEVARTVLKQFGI 218 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------------LDRFSFETVLHA 262 S S+ P GG F++ F + G FSF+ L A Sbjct: 219 STSGNWSALNP-------LGGNFLTNNTGFPLTGSRSPDANALTASVQTGGFSFKATLRA 271 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGAT-----SVTTH 310 E+A R LAEPTLTAISG+SA FT+GG+ TVS T + ++T Sbjct: 272 FEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVSQGCVVALTYK 331 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE--P------VIGVNAGDMPSYRVRKADTTVEL 362 YGV L FTP V++ RI +RI T+V + P + +P R ++TTVEL Sbjct: 332 PYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTTKRSSETTVEL 391 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ I TP++ +P+ Sbjct: 392 ASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMIMVTPYIAQPM 451 Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 R + RPDD + D +A R+NKIYG + G Y+G +GFI Sbjct: 452 EARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500 >gi|188581660|ref|YP_001925105.1| type II and III secretion system protein [Methylobacterium populi BJ001] gi|179345158|gb|ACB80570.1| type II and III secretion system protein [Methylobacterium populi BJ001] Length = 502 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 161/487 (33%), Positives = 254/487 (52%), Gaps = 45/487 (9%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 S P+ A+ P + V+ I E +K+ + + +I+ +P D ++V V++P A+ Sbjct: 26 SGPASAQ--PGLPGASPVLTIGPNETAVSRKVELSKGRSLIIDLPRDAKEVFVANPAVAN 83 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L +L++ + V Sbjct: 84 AVVRSSRKLFLIGIDNGATSIFVMDAEGRQIAALDVTIARDINVLRQSLQQSLPSGRFDV 143 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + V D++VL G V + ++Q+A++++ F+ + A + V+N L I +DQV + Sbjct: 144 KAVGDSLVLSGSVNSASEAQQALDIANAFVGIAAGGGVATRGT--VINNLTIRNKDQVMI 201 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------- 250 +VT+ EV R +LKQ G S ++ P GG + F + G Sbjct: 202 RVTVVEVARTVLKQFGISTSGNWAALNP-------LGGNVFTNNTGFPLTGSRSPDANAI 254 Query: 251 -----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTV 298 FSF L A E+A R LAEPTLTAISG+SA FT+GG+ TV Sbjct: 255 TASVQTGGFSFRATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCAAASTV 314 Query: 299 SSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--P------VIGVNA 345 S T + ++T YGV L FTP V++ RI +RI T+V + P + Sbjct: 315 SIGTSISQGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRP 374 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P R ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ + R Sbjct: 375 TPVPGTTRRSSETTVELASGATMMTAGLIQQKNRGAISGLPGLMNLPILGALFRSRDYQR 434 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 +ETE+ I TP++ +P+ R + +PDD Y D +A R+NKIYG + G Y Sbjct: 435 DETELMIMVTPYIAQPMEARQVQKPDDGYVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAY 493 Query: 466 KGAIGFI 472 +G +GFI Sbjct: 494 RGRVGFI 500 >gi|218530654|ref|YP_002421470.1| type II and III secretion system protein [Methylobacterium chloromethanicum CM4] gi|218522957|gb|ACK83542.1| type II and III secretion system protein [Methylobacterium chloromethanicum CM4] Length = 499 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 151/462 (32%), Positives = 250/462 (54%), Gaps = 30/462 (6%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+ I E +++ + + +I+ +P D ++V V++P A+ VV S R ++L G + G Sbjct: 41 VLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAVVRSSRKLFLIGIDNG 100 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 ++ ++ +G+Q+ LD+ I RDI L +L+ + V+ V D++VL G V + Sbjct: 101 ATSIFVMDGEGRQIAALDVTIARDINVLRQSLQLSLPGGRFDVKAVGDSLVLSGSVNSTS 160 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 ++Q+A++++ F+ + A + V+N L I +DQV ++VT+ EV R +LKQ G Sbjct: 161 EAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMIRVTVVEVARTVLKQFGI 218 Query: 216 QHSITGSSSG-----PSKSFAAD-----FGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 ++TG+ + P+ + + G + +G S S + L A E+ Sbjct: 219 --NVTGNWAALNPLSPTGNVLTNTTPFPLTGAYSPDGNALSASIRSGGVSLQATLRAFEQ 276 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSSTGATSVTTHDYGVVLHFTP 320 A R LAEPTLTAISG+SA FT+GG+ + V+ + ++ YGV L FTP Sbjct: 277 AGVSRILAEPTLTAISGESAKFTAGGEIPVPSNCSAGVAGAACTVALEFKPYGVSLAFTP 336 Query: 321 TVLSPGRIGLRIQTEVSE---------PVIGVN-AGDMPSYRVRKADTTVELPSGGTIVL 370 V++ RI +R+ T+V+E G N +P+ R ++TTVEL SG T++ Sbjct: 337 IVMAENRISIRVATDVTELDRQNSYSFSFPGSNRVTPVPATTRRSSETTVELASGATMMT 396 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGL++ + G+P L +PILGALFR+ + R+ETE+ I TP++ +P+ R + RP Sbjct: 397 AGLIQQKSRASISGLPGLMNLPILGALFRSRDYQRDETELMIMVTPYIAQPMEARQVQRP 456 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 DD + D +A R+NKIYG + G Y+G +GFI Sbjct: 457 DDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 497 >gi|315497465|ref|YP_004086269.1| type II and iii secretion system protein [Asticcacaulis excentricus CB 48] gi|315415477|gb|ADU12118.1| type II and III secretion system protein [Asticcacaulis excentricus CB 48] Length = 476 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 151/431 (35%), Positives = 238/431 (55%), Gaps = 35/431 (8%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++ +PVD DV VS+P AD V+ +PR +++ G GQ++ I G+Q+LNL I + Sbjct: 62 VVDLPVDAADVFVSNPAVADAVLRTPRRIFVLGVAAGQSDAIFFDATGRQILNLQIRVGV 121 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 L T+++ S+++V+ V+ V+L G+V +S+ LS F + Sbjct: 122 STDQLSDTVQKLYPQSDVQVQSVNGYVILSGVVANASESEAIQRLSVAFAEKP------- 174 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFG 235 + ++N+L++AG+DQV+LKV I EV++ +KQ+GF + +G + A +G Sbjct: 175 ---ENIINMLSVAGKDQVSLKVRIVEVQKSSIKQMGFNFNGLSGQTGEVQYALQNAPTYG 231 Query: 236 GKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + GG +K G D+ L A ER +RTLAEP L A+SG+SA F +GG+ Sbjct: 232 TNGKALGG---MKIGYADKL-LSASLQAFERVGLVRTLAEPNLAAVSGESAKFLAGGEFP 287 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------- 347 + G +V YGV L FTP VLS G I L++ TEVSE V N G Sbjct: 288 VPVAKDTQGRVTVEFKTYGVGLGFTPVVLSNGTISLKLSTEVSEIV---NTGSFSLDDTF 344 Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P VR+A+TTVELPSGG++++AGLL+ +Q + +P ++ IP+LGALFR+ F E Sbjct: 345 TIPGLSVRRAETTVELPSGGSLMIAGLLQSKYKQSIDALPGMTTIPVLGALFRSRDFLDE 404 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK-----EASEVE 461 +TE+ + TP+++ + P D++ V D ++ F R+NK K EA + Sbjct: 405 QTEMVVIVTPYIISAKSPDAFQTPADNFQVASDLESVFLGRLNKSVRAKRGEVAEAPPLA 464 Query: 462 GQNYKGAIGFI 472 G +Y+ IG++ Sbjct: 465 G-SYQAPIGYV 474 >gi|170750189|ref|YP_001756449.1| type II and III secretion system protein [Methylobacterium radiotolerans JCM 2831] gi|170656711|gb|ACB25766.1| type II and III secretion system protein [Methylobacterium radiotolerans JCM 2831] Length = 546 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 159/505 (31%), Positives = 257/505 (50%), Gaps = 73/505 (14%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A V+ + E +++ + + +I+ +P D ++V V++P A+ VV S R +++ G Sbjct: 51 APVLTVGAAEANTTRRVELTAGRSVIVDLPRDAKEVFVANPAVANAVVRSTRKVFVIGMA 110 Query: 94 VGQANVILIGHDGKQMLNLDILIERDI--AHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G ++ ++ +G+Q+ LD+ + RD+ L L + I V +V+L G V Sbjct: 111 DGATSIFIMDAEGRQIAALDVTVARDLNLGTLRELLSQSIPGGRFDVRSSGASVLLSGAV 170 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANS----------SSKKVMNLLNIAGEDQVTLKVT 201 + D+Q+A++++ F+ G + S V+N L I +DQV L+VT Sbjct: 171 NSSSDAQQAIDIANAFVGLGGGGAAGPAGAASGGVAAGSRGAVINNLTIRNKDQVMLRVT 230 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------------------ 243 + EV R++LKQ G + S+ P + G+ V GG Sbjct: 231 VVEVSRNVLKQFGINMAGNWSALNPVGNL-----GQTVVNGGTAAATQVPAYLPNVITNN 285 Query: 244 ---------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 SV+G FS + L A E+A R LAEPTLTAISG++A F Sbjct: 286 LPFPINTNTPSGNLIQASVQG--GGFSLQATLKAFEQAGVSRILAEPTLTAISGEAAKFL 343 Query: 289 SGGQHLYKTVSSSTGATS------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--- 339 +GG+ + +S+T A +T YGV L FTPTVL+ RI +R+ T+V+E Sbjct: 344 AGGE--FAVPASATCAVGGVCSPGITYKPYGVALSFTPTVLADNRISIRVATDVTEIDTQ 401 Query: 340 -----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VIG + +P RVR+++TTVELPSGG ++ AGL++ +Q G+P L +PIL Sbjct: 402 QSFSYVIGNTSVAVPGTRVRRSETTVELPSGGVMMTAGLIQQFNKQAIAGLPGLINLPIL 461 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 GALFR+ + R+ETE+ I TP++ +P+ + +SRPDD++ D + ++N+IYG Sbjct: 462 GALFRSRDYQRQETELMIMCTPYIARPMEPKQVSRPDDNFVDASDGQTVLLGQINRIYGK 521 Query: 455 KEASEVE-----GQNYKGAIGFIYK 474 G+ Y+G +GFI + Sbjct: 522 VAPPGATAAAPLGRAYRGRVGFIVE 546 >gi|329890996|ref|ZP_08269339.1| bacterial type II and III secretion system family protein [Brevundimonas diminuta ATCC 11568] gi|328846297|gb|EGF95861.1| bacterial type II and III secretion system family protein [Brevundimonas diminuta ATCC 11568] Length = 522 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 141/475 (29%), Positives = 251/475 (52%), Gaps = 70/475 (14%) Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 + +P D +DV++S+P A+ ++HSPR + + G G+ + + + G+ +L L + ++ Sbjct: 58 VDLPADARDVIISNPAVAEAMLHSPRRITMIGLAGGETDAVFLDASGRTILALRVRVDAG 117 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 ++ L+ TL R SN+R E V+D+++L G+ + +++RA +++ F+S Sbjct: 118 VSALQDTLARVAPGSNVRAEAVNDSIILTGVAASPLEAERAAQVARAFVS---------- 167 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ-----------IGFQHSITGSSS--GP 226 + +KVMN++ +AG DQVTLKV + EV+R+ +KQ +G + G+S+ G Sbjct: 168 APEKVMNMIAVAGSDQVTLKVRVVEVQRNAIKQLGFDTQAVIGRVGDTQWLLGNSATWGV 227 Query: 227 SKSFAADFGGKFVSEG-----------GDFSVKGVL----------DRFSFET------- 258 + SF G + G +G + D +++T Sbjct: 228 NGSFLGGLAGGIARDTTKNFQMQVPCVGPGWPEGAMCPVTVDGSPGDPSNWDTAKPGTGP 287 Query: 259 ----------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 +L A ER +RTLAEP LT+++G++ASF +GG+ G +V Sbjct: 288 GSDGLNKGEAMLKAFERVGLVRTLAEPNLTSVNGEAASFLAGGEFPVPAGRDREGQITVE 347 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAG-------DMPSYRVRKADTT 359 YGV L F P VLS GRI L+++ EVSE P G+ G +P VR+++ T Sbjct: 348 YKPYGVGLSFRPVVLSEGRISLQVKVEVSELTPNGGLTIGAGTPSSITLPGLTVRRSENT 407 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +ELPSGG++++AGLL++ +Q + +P ++ +P+LG LFR+ + ETE+ + P++V Sbjct: 408 IELPSGGSMMIAGLLQESTRQAIDALPGMTNLPVLGQLFRSRDYVMGETELVVIVEPYIV 467 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 P + + P D + DA+ FF ++N++YG + G ++G +G++ + Sbjct: 468 NPTSPDRMQTPADGLRIAQDAQTIFFGQLNQVYGSPAPAAQPGAGWRGPVGYVIE 522 >gi|114799376|ref|YP_761691.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444] gi|114739550|gb|ABI77675.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444] Length = 535 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 153/502 (30%), Positives = 256/502 (50%), Gaps = 89/502 (17%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 +++++G++K +I+ + DV++S+P AD VV + + + G GQ N ++ G Sbjct: 44 RRVTLGVDKSMIVDLEAPAADVVISNPEIADAVVQTAQRIIFRGIKFGQTNALIFDRAGN 103 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 +L+L+I++E D+A LE T+ R I D+ +++E + +V+L GMV + S + +L + F Sbjct: 104 TLLDLNIMVETDLAALEETISRHIPDARVKIESFNGSVILTGMVDNLSQSDQVSQLVKAF 163 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF------------ 215 +S A +++N+LN+ DQV L+V I E++R ++KQ+G Sbjct: 164 FPES-----AGGGELQIVNMLNVNAADQVMLEVRIVEMQRSVIKQLGINLSGATSFGELA 218 Query: 216 ---------------------QHSITGSSS--------GPSKSFAADFGGKFVSEGGDFS 246 +++ TG + GPS + + S F+ Sbjct: 219 NQTLQQVFQGGLPLFFDPDSGEYNTTGQGTAVEMLQPAGPSSNTISG------SASSGFN 272 Query: 247 VKG-VLDRFSFET----------------VLHALERATAIRTLAEPTLTAISGQSASFTS 289 V+G L S ET + A+ER +RTLAEP + A+SG+SA F + Sbjct: 273 VQGQALGGISLETGYTNYNNGRLQSSIGAAIDAMERVGIVRTLAEPNIVAMSGESAKFLA 332 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PV 340 GG+ + G +V YGV L FTP VLS GRI L++ TEVSE Sbjct: 333 GGEFPVPVGQNQNGQITVEFKPYGVGLAFTPVVLSEGRISLKVSTEVSELTSQGAFQGAA 392 Query: 341 IGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + GD +P+ VR+A++ VELPSGG++++AGL+ +Q + +P L K Sbjct: 393 QTITDGDGNTTIIQGATLPALSVRRAESVVELPSGGSMMMAGLISVKDRQTIDQLPGLKK 452 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 +PILG+LF++ F EETE+ + TP+LV + P D Y+ DAK FF ++N+ Sbjct: 453 LPILGSLFQSRDFLSEETELVVMVTPYLVGATNKASMVTPADGYANASDAKTIFFGKLNE 512 Query: 451 IYGPKEASEVEGQNYKGAIGFI 472 YG ++ + ++ +Y+ +GF+ Sbjct: 513 TYG-RDGAPIKPDDYRAPVGFM 533 >gi|302381756|ref|YP_003817579.1| type II and III secretion system protein [Brevundimonas subvibrioides ATCC 15264] gi|302192384|gb|ADK99955.1| type II and III secretion system protein [Brevundimonas subvibrioides ATCC 15264] Length = 520 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 152/492 (30%), Positives = 254/492 (51%), Gaps = 69/492 (14%) Query: 42 VEIGKGKK-ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 V G G + I++ + +P D +DV+VS+P A+ VHSPR + + G G+ + + Sbjct: 39 VAAGSGPRLINLPRGTSFAVDLPADARDVIVSNPAVAEANVHSPRRITVIGIAPGETDAV 98 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + G+ +L L + ++ + L+ TL R + + E V+D++VL G+V + S++ Sbjct: 99 FLDAAGRSILTLRVRVDAGVTALQDTLSRVAPGAQVHAEAVNDSIVLTGLVTSAAQSEQV 158 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-- 218 +++ F+S + +KV+N+L IAG DQVTLKV I EV+R+ +KQ+GF + Sbjct: 159 AQVARAFVS----------APEKVLNMLTIAGSDQVTLKVRIIEVQRNAIKQLGFDTAAA 208 Query: 219 -----------------------ITGSSSGPSKSFAADF------GGKFVSEG-GDFSVK 248 + G S+G S++ +F G F ++ F+V Sbjct: 209 LGRVGDTQFLLSQAASFGVNGSLLGGISAGVSRNTTQNFQLQGPCGPGFPADSLCPFTVD 268 Query: 249 GVLDRFSFET-----------------VLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G D +++T ++ A ER IRTLAEP LT+++G+SASF +GG Sbjct: 269 GPEDASNWDTAQPGTGPGSDDLNKGNAMIKAFERVGLIRTLAEPNLTSVNGESASFLAGG 328 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAG- 346 + T G ++ YGV L F P VLS GRI L+I EVSE I + AG Sbjct: 329 EFPVPTGRDRDGNVTIEFKPYGVSLGFRPIVLSEGRISLQISAEVSELTQTGGITLGAGT 388 Query: 347 ----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++ VR+ TVE+PSGG++++AGLL++ +Q + +P L +P+LG LFR+ Sbjct: 389 STALNIAGLNVRRVQNTVEIPSGGSMMIAGLLQESTRQAIDSLPGLGGLPVLGQLFRSRD 448 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 + ETE+ + P++V P + L P D + DA+ FF ++N+ YG ++ Sbjct: 449 YLSGETELVVIVEPYIVTPTSPNRLQTPADGLRIATDAQTIFFGQLNQAYGSPAPTDTAS 508 Query: 463 QNYKGAIGFIYK 474 ++G +G++ + Sbjct: 509 AGWQGPVGYVIE 520 >gi|83859357|ref|ZP_00952878.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633] gi|83852804|gb|EAP90657.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633] Length = 529 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 155/501 (30%), Positives = 262/501 (52%), Gaps = 83/501 (16%) Query: 43 EIGKG---KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 E G G + + + L + ++ +P D DV++++ A VV + R ++ G+ VG+ N+ Sbjct: 43 EPGAGPASESLQLPLGQAAVIHLPEDAADVVIANDEVASAVVRTTRRAFVMGQAVGRTNI 102 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 DG +L+L++ +ERDIA L+ L RF+ + I+ E ++ +VL G V + + Sbjct: 103 FFFNADGGLILDLNVRVERDIAALQDALDRFVPEGRIQAESMNANIVLSGQVPSAAAADT 162 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A+++++ ++ + ++V++ L + G DQVTL+V I E+ R +++Q+G ++ Sbjct: 163 ALQVAQRWVD----------TPEQVVSFLTVEGRDQVTLQVRIVEMERTLVRQLGV--NL 210 Query: 220 TGSSS----GPSKSFAA--DFG-----------------GKFVSEGGDFS---------- 246 +G + P+ AA D G G+F + G + Sbjct: 211 SGEQAFGEFTPTVRTAATNDRGDPLFDQNGAPIYEVYQQGRFQNSAGWGTSNAFGVAGAA 270 Query: 247 -------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V GVL + S L+ALER +RTLAEP +TAISG+ A F +GG+ Sbjct: 271 LGGLTGTLGTQNLVDGVL-QSSISATLNALERVGLVRTLAEPNITAISGEPAQFLAGGEF 329 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----------PVIG 342 G ++ +GV L FTP VLS GRI LR+ TEVSE VI Sbjct: 330 PVPVGRDRDGNVTIEFKPFGVGLGFTPVVLSEGRISLRVSTEVSELSNEGAISLNSQVIT 389 Query: 343 VNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + G+ +P+ V +A+TTVELPSGG++V+AGL++++ +Q + +P + ++P+ Sbjct: 390 DDQGNVTGTVQGVTIPALSVNRAETTVELPSGGSMVIAGLIREETRQAMDSVPGIERMPV 449 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG+LFR+ F ETE+ + TP+LV P+ D+ P + ++V A F R+N++Y Sbjct: 450 LGSLFRSRDFANNETELVVVVTPYLVDPLNPNDVESPAEGFAVSSLAAGAFLGRLNRVYA 509 Query: 454 PKEASEVEGQNYKGAIGFIYK 474 A +VE + + G IGF+ + Sbjct: 510 APGA-QVENRGWSGPIGFVLE 529 >gi|220922779|ref|YP_002498081.1| type II and III secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947386|gb|ACL57778.1| type II and III secretion system protein [Methylobacterium nodulans ORS 2060] Length = 494 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 246/462 (53%), Gaps = 32/462 (6%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A V+++ E ++I + + +++ +P D ++V V++P A+ VV S R +++ G Sbjct: 40 APVLSVGPQEADISRRIDLTQGRSLVVDLPRDAKEVFVANPKVANAVVRSTRKVFIIGVE 99 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G ++ ++ +G+Q+ LD+ + RD+ L TL I V D+++L G V + Sbjct: 100 NGATSIFVMDAEGRQIAALDVTVGRDLNVLRQTLASSIPKGRFEVRPAGDSILLSGSVNS 159 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 ++Q+A++++ F+ V+N + I G+DQV L+VT+ EV R +LKQ Sbjct: 160 AAEAQQAIDVANAFVGIG---GGGVPGRGAVINNITIRGKDQVMLRVTVVEVSRSVLKQF 216 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR-------FSFETVLHALERA 266 G +++G+ S + + A GG F + + S L A E+A Sbjct: 217 GV--NLSGNWSNLNFANVA----PLALNGGSFPIGNAISGSINFGGGASLTATLKAFEQA 270 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSS---TGATSVTTHDYGVVLHF 318 R LAEPTLTAISG+SA FT+GGQ +L + S+ SVT YGV L F Sbjct: 271 GVSRVLAEPTLTAISGESAKFTAGGQLPVPGNLACSAPSNGVQLCTPSVTFKPYGVSLTF 330 Query: 319 TPTVLSPGRIGLRIQTEVSE--PVIGVNAG------DMPSYRVRKADTTVELPSGGTIVL 370 TP VLS RI +R+ T+V+E P +N +P + VR ++TTVEL SG T++ Sbjct: 331 TPVVLSENRISIRVGTDVTEIDPQNSMNINFSGTTTAIPGFTVRTSETTVELASGATMMT 390 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGL++ + G+P L +PILGALFR+ + R+ETE+ I TP++ K + ++ RP Sbjct: 391 AGLIQQRNRAAITGLPALMNLPILGALFRSRDYQRDETELMIMVTPYIAKAMEPAEIKRP 450 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 DD + D +A R N++YG AS + + Y G GFI Sbjct: 451 DDGFVDATDGQAVLLGRFNRLYGVVGASPLAPKAYHGRFGFI 492 >gi|329847253|ref|ZP_08262281.1| bacterial type II and III secretion system family protein [Asticcacaulis biprosthecum C19] gi|328842316|gb|EGF91885.1| bacterial type II and III secretion system family protein [Asticcacaulis biprosthecum C19] Length = 535 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 147/447 (32%), Positives = 230/447 (51%), Gaps = 64/447 (14%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++ +P D DV VS+P AD V+ +PR +++ G GQ++ I G+Q+LNL I +E Sbjct: 71 VVDLPTDAADVFVSNPAVADAVLRTPRRIFVLGVEGGQSDAIFFDAQGRQILNLSIRVEA 130 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 L T+ R S + V+ ++ VVL G+ + + + L+ +++++ Sbjct: 131 ATDELTDTVHRLFPTSKVEVQSLNGRVVLSGLAQNNAQADQIARLAASYVTKP------- 183 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------- 231 + V+NL++IAG+DQVTLKV + EV+R +KQ+G I ++ S S+ Sbjct: 184 ---EDVINLMSIAGKDQVTLKVRVIEVQRSAIKQLGLSSDIVYNNGSQSYSYGRGNTYGT 240 Query: 232 --ADFGGKFVSEGGDFSVKG--------------------VLDRF--------------- 254 +GG+ + G + V V++R Sbjct: 241 NGTSYGGRGLCYGQNNVVTNNFTDSNSVTDQTAVTLEDTPVVNRTLTATIGSAVNTTWRT 300 Query: 255 ----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 S T L A ER IRTLAEP LTA+SG++A F +GG+ G +V Sbjct: 301 LTGSSNATCLQAFERVGLIRTLAEPNLTAVSGEAAKFLAGGEFPVPVAEDDAGRITVEFK 360 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGV---NAGDM--PSYRVRKADTTVELPS 364 +GV L FTP VLS GRI ++I TEVSE +G N ++ P VR+A+TTVE+ S Sbjct: 361 PFGVGLGFTPVVLSEGRISMKISTEVSEITNVGAFTSNGSNLTIPGLSVRRAETTVEMQS 420 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 GG++++AGLL+ +Q + +P ++ +PILG+LFR+ F E+TE+ + TP++V PV Sbjct: 421 GGSLMIAGLLQSKYKQSIDSLPGMTSLPILGSLFRSRDFLNEDTELVVMVTPYIVDPVHP 480 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKI 451 L P D+ DD F R+NK+ Sbjct: 481 DQLQTPADNLEFADDMSTVFMGRLNKV 507 >gi|167648152|ref|YP_001685815.1| type II and III secretion system protein [Caulobacter sp. K31] gi|167350582|gb|ABZ73317.1| type II and III secretion system protein [Caulobacter sp. K31] Length = 545 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 159/518 (30%), Positives = 255/518 (49%), Gaps = 78/518 (15%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80 P + P + V+ I D+ + +++ K I+++PVDV+D+LV++P AD V Sbjct: 42 PRIIDTPTLAPPADQVLRI-DLTASGAQSLTLARGKSAIVELPVDVRDMLVTNPAVADAV 100 Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140 + PR +Y+ G G + + G+++L+L I +++D + L+ TLRR + +NI V+ Sbjct: 101 LRGPRRIYVLGMGQGVTDAVFFDAAGRKILSLAIRVDQDSSALQDTLRRVLPAANIEVQS 160 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + D+V+L GMV + +S A +++ F+ + V+N+L IAG+DQV LKV Sbjct: 161 IRDSVILTGMVANVGESTMASQIAARFVDKP----------DNVLNMLTIAGKDQVMLKV 210 Query: 201 TIAEVRRDI-----------LKQIGFQHSITGSSSG------------------------ 225 I EV+R+I L Q+G G S Sbjct: 211 RIVEVQRNIIKQLGVDSSAVLGQLGETQYAFGLSPSYGINGKLLGGLTGGYKADTTKQPT 270 Query: 226 ---PSKSFAADFGGKFVSEGGDFSV------------KGVLDRFSFETVLHALERATAIR 270 P + D G K + D SV G S + ++ A ER +R Sbjct: 271 LQVPCNAALPD-GAKCLQIVRDNSVYSNGDTATITDTAGSAGLNSAKGMIQAFERVGLVR 329 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 TLAEP LT +SG++ F GG+ +TG ++ YGV L +TP VLS GRI L Sbjct: 330 TLAEPNLTVVSGEAGKFLVGGEFPVPVGQDATGKVTIEFKPYGVGLGYTPIVLSGGRISL 389 Query: 331 RIQTEVSE-------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 ++ TEVSE + +P VR+A+TTVELPSGG++++AGLL+ Sbjct: 390 KLSTEVSELSSLGAFTLTTSTGTSTSSNLTVPGLTVRRAETTVELPSGGSLMIAGLLQQQ 449 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +Q + +P ++ +PILGALFR+ + ETE+ + TP++V P ++L P D Sbjct: 450 TRQNIDALPGMTSLPILGALFRSRDYLNGETELVVIITPYIVDPTKPQNLQTPADGLQTA 509 Query: 438 DDAKAFFFNRVNKIY-GPKEASEVEGQNYKGAIGFIYK 474 D R+NK+ P A+ G+ Y+G +G++ + Sbjct: 510 SDMSTALLGRLNKVVKAPVGAN--SGRAYQGPVGYVIE 545 >gi|254418362|ref|ZP_05032086.1| Putative phospholipid-binding domain family [Brevundimonas sp. BAL3] gi|196184539|gb|EDX79515.1| Putative phospholipid-binding domain family [Brevundimonas sp. BAL3] Length = 517 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 140/474 (29%), Positives = 250/474 (52%), Gaps = 69/474 (14%) Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 + +P D +DV+V++P A+ ++HSPR + + G G+ + + + G+ +L+L + ++ Sbjct: 54 VDLPADARDVIVANPQVAEAMLHSPRRITVIGIAPGETDAVFLDAAGRTILSLRVRVDAG 113 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + L+ TL R + S IR E V+D+V+L G+ + + +A +++ F+S Sbjct: 114 TSALQDTLSRLVPGSQIRAEAVNDSVILSGVADSPAQAVQAAQVARAFVS---------- 163 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------------- 218 + +KV+N+++IAG DQVTLKV + EV+R +KQ+GF S Sbjct: 164 APEKVLNMISIAGSDQVTLKVRVVEVQRSAIKQLGFDTSAVVGQLGSTQWLLGNSATWGV 223 Query: 219 ----ITGSSSGPSKSFAADFGGKFVSEGGDFS--------VKGVLDRFSFETV------- 259 I G S+G S+ ++ + G ++ V+G D +++T Sbjct: 224 NGGLIGGISAGLSRDTTKNYQMQRPCVGPGWTPGALCPVTVRGPDDASNWDTAQPGTGPG 283 Query: 260 ----------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + A ER +RTLAEP LT+++G++ASF +GG+ + G +V Sbjct: 284 SNDLNKGSATVKAFERVGLLRTLAEPNLTSVNGEAASFLAGGEFPIPSGRDRDGNITVVY 343 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAG-----DMPSYRVRKADTTV 360 YGV L F P VL GRI L+++ EVSE + + AG +P VR+++ TV Sbjct: 344 KPYGVALSFRPVVLDAGRISLQVKVEVSELTSQGGLTIGAGTTSSVSLPGLSVRRSENTV 403 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL SGG++++AGLL+++ +Q + +P ++ +P+LG LFR+ + ETE+ + P++V Sbjct: 404 ELSSGGSMMIAGLLQENTRQAIDALPGMTNLPVLGQLFRSRDYLNGETELVVIVEPYIVS 463 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 P + + P D + D++ F ++N+IYG + G ++GA G++ + Sbjct: 464 PTSPDRMQTPADGLRIASDSQTILFGQLNQIYGSPSPTAQSGAVWQGAAGYVIE 517 >gi|46201037|ref|ZP_00207939.1| COG4964: Flp pilus assembly protein, secretin CpaC [Magnetospirillum magnetotacticum MS-1] Length = 480 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 146/420 (34%), Positives = 234/420 (55%), Gaps = 28/420 (6%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + + + + K + L +P V++V++ + ADV+V SP +++ G+ VGQ NV L+ G+ Sbjct: 51 ESMQVPVGKSVDLTLPGAVREVVIGNSDIADVMVRSPNLVHITGRAVGQTNVFLVDRAGR 110 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 M +D+ + D + LR + D I VE V+D++ L G V+ ++ A L+ Sbjct: 111 VMRRIDLNVSIDSQAVRDALRAVLPDERAINVEAVADSLYLSGSVKNDAAARDAKMLARR 170 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------IT 220 F+++ K++NLL + E QV L V +AE++R +LK++GF + + Sbjct: 171 FVAEDA----------KLVNLLRVVNEQQVLLHVKVAEIQRTVLKELGFGLTANKGIPLI 220 Query: 221 GSSS-GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 GSS G ++ G S F + + L+ LE IRTL EP LTA Sbjct: 221 GSSVLGSGSKTSSTVGLIDSSSTAIFGTATITGIGALAANLNILENQGLIRTLVEPNLTA 280 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 +SG++A+ +GG+ L +S + GA SV YGV+L FTPTVL PGR+ L++ TEVS Sbjct: 281 VSGETATMLAGGE-LPIPISQTNGAVSVEFKPYGVLLSFTPTVLDPGRLSLKMSTEVS-- 337 Query: 340 VIGVN-------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 I N + +P+++VR+A +TVELPSGG+I++AGLL++DI G+P L +P Sbjct: 338 AIDNNNKTAISSSISVPAFKVRRAGSTVELPSGGSIMIAGLLQNDITSNITGLPGLMDLP 397 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +LG LFR++ F R ETE+ + + ++V+PV L P+D ++ D K F R+ Y Sbjct: 398 VLGLLFRSNAFQRNETELVVILSAYVVRPVEQPVLGTPNDGFAPSSDLKRFLLGRLQDTY 457 >gi|83312840|ref|YP_423104.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum magneticum AMB-1] gi|82947681|dbj|BAE52545.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum magneticum AMB-1] Length = 495 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 140/421 (33%), Positives = 235/421 (55%), Gaps = 31/421 (7%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + + + + K I L +P V++V++ + ADV+V +P +++ G+ VGQ NV L+ G+ Sbjct: 67 ESMQVPVGKSIDLPLPGAVKEVVIGNSDIADVIVRTPHMVHITGRAVGQTNVFLMDRSGR 126 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 M +D+ + D ++ LR + + I VE V+D++ L G V+ ++ A ++ Sbjct: 127 VMRRIDLAVAIDSQAVKDALRAVLPEERAITVEAVADSLYLSGSVKNDGAARDAKMVARR 186 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 F++ G K++N++ + E QV L V +AE++R +LK++GF + S S P Sbjct: 187 FVADDG----------KLVNMIRVVNEQQVLLHVKVAEIQRTVLKELGFGLTANKSISLP 236 Query: 227 SKSFAAD------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + G S F V + + LE IRTL EP LTA+ Sbjct: 237 GTASLSSFTTSSTVGLIDSSSTAIFGTATVTGLGALAANFNILENQGLIRTLVEPNLTAV 296 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 SG++A+ +GG+ L VS++ G+ SV YGV+L FTP VL PGR+ L++ TEVS Sbjct: 297 SGETATMLAGGE-LPIPVSTTNGSISVEFKPYGVLLSFTPVVLDPGRLSLKMSTEVS--- 352 Query: 341 IGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ + +P+++VR+A +TVELPSGG+I++AGLL++DI G+P L + Sbjct: 353 -AIDTANKTAITTTISVPAFKVRRAGSTVELPSGGSIMIAGLLQNDITANIAGLPGLMDL 411 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P+LGALFR++ F R ETE+ + + ++++PV +LS P+D ++ D K F R+ Sbjct: 412 PVLGALFRSNAFQRNETELVVILSAYVIRPVDQPNLSTPNDGFAPSSDLKRFLLGRLQDT 471 Query: 452 Y 452 Y Sbjct: 472 Y 472 >gi|304320647|ref|YP_003854290.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503] gi|303299549|gb|ADM09148.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503] Length = 494 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 238/455 (52%), Gaps = 44/455 (9%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 +++ + L K I+++P D++VSDP + V+ +P+ ++L G+ GQAN Sbjct: 52 REVLLPLGKAAIIELPRPATDIIVSDPDIVEAVIRTPQRVFLMGREAGQANAFFFDRANN 111 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 Q+LNL+I +E+D + + + + ++ I VE ++ V++HG V D+QRA E++ F Sbjct: 112 QILNLEIRVEQDADTIRELMTKLVPNARISVESLNGNVIIHGTVDNASDAQRAGEIASRF 171 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 +G + + +N+L + QV LK+ I E++R +++Q+G + + Sbjct: 172 ---AGEDNF--------VNMLKVREPSQVLLKIKIVEMQRRLVRQLGIDLNGVAQVDRSA 220 Query: 228 KSFAAD--FGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 FA F S GG + S G D + + E+ ++TLAEP++ A+SG Sbjct: 221 IEFAVQNSFAISGQSLGGINANLSTPGFGDITNLDFAFDIFEQNGLVKTLAEPSIVALSG 280 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 ++ASF +GG+ +S+ G SVT +GV L F P V S RI L + TEVS+ V Sbjct: 281 RNASFLAGGEFPVPE-ASANGTPSVTFKPFGVQLEFQPVVYSKNRIQLTLATEVSD-VSN 338 Query: 343 VNA---------------GDM----------PSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VN G++ P R A TTVELPSGG++ LAGLL++D Sbjct: 339 VNGLSIAGATQAEEDPDTGEIIEQTFEGFIVPGTVSRSAATTVELPSGGSLALAGLLQED 398 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 I ++ +G+P L + P+LGALFR+ F ++TE+ I ATP+LV+P + L+ P Y+ Sbjct: 399 INEVIDGVPGLKETPVLGALFRSQEFQSQQTELVIIATPYLVEPTDLAALTDPAQGYAPP 458 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 ++ ++ YG + + Q G IGFI Sbjct: 459 SPVQSVILGQLESAYGVRGRKARDAQ-LSGPIGFI 492 >gi|16127175|ref|NP_421739.1| pilus assembly protein CpaC [Caulobacter crescentus CB15] gi|221235976|ref|YP_002518413.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus NA1000] gi|7208425|gb|AAF40192.1|AF229646_4 CpaC [Caulobacter crescentus CB15] gi|13424571|gb|AAK24907.1| pilus assembly protein CpaC [Caulobacter crescentus CB15] gi|220965149|gb|ACL96505.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus NA1000] Length = 560 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 146/496 (29%), Positives = 247/496 (49%), Gaps = 82/496 (16%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 + +E+ KGK I+++P +V+D+LV++P AD V+ R +Y+ G G + Sbjct: 86 ATLELAKGKSA--------IVELPSEVRDLLVTNPQIADAVLRDKRRIYIVGLAEGTTDA 137 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 G+++L+L I + + + L L + + D+ I V + D+VVL G VRT +++ Sbjct: 138 AFFDTAGRRILSLSIRVSQPVDQLAAMLGKILPDAKITVSPIRDSVVLSGTVRTASEAES 197 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--- 216 A ++ F+ S +KV+N++++AG+DQV L+V I EV+R+++KQ+G Sbjct: 198 AARIAAQFVG----------SPEKVLNMISVAGKDQVMLQVRIVEVQRNVIKQLGVDLNA 247 Query: 217 -----------------HSITGS----------------------SSGPSKSFAADFGGK 237 + + GS +GP + A Sbjct: 248 VIGQLGETQYTFGMAPGYGVNGSLLGGVTGGYKMDTTKQPVMQTPCTGPG--WTAGSLCP 305 Query: 238 FVSEGGDFSVKGVLDRF-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 V+ GG S + S + ++ A ER +RTLAEP L A+SG+S F G Sbjct: 306 VVARGGGNSDTATIQSTAGDPGLNSAKGMIQAFERVGLVRTLAEPNLAAVSGESGKFLVG 365 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAG--- 346 G+ T S ++G ++ YGV L +TP VLS GRI L++ TEVSE +G + Sbjct: 366 GEFPVPTGSDTSGKVTIEFKPYGVGLGYTPVVLSGGRISLKLSTEVSELSSLGAFSMSTG 425 Query: 347 --------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 +P VR+ ++TVELPSGG+++LAGLL+ ++ + +P ++ +PILG+LF Sbjct: 426 TSSGSTNLTVPGLSVRRVESTVELPSGGSLMLAGLLQQTTKETIDSLPGMTSMPILGSLF 485 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 R+ F +TE+ + TP+++ P ++L P D D R+NK+ A Sbjct: 486 RSRDFLNNQTELVVIITPYIIDPTRPQNLQTPADGLQFASDMGTVLLGRLNKVV-KAPAG 544 Query: 459 EVEGQNYKGAIGFIYK 474 G+ Y+G +G++ + Sbjct: 545 ANAGRAYQGPVGYVIE 560 >gi|254293214|ref|YP_003059237.1| type II and III secretion system protein [Hirschia baltica ATCC 49814] gi|254041745|gb|ACT58540.1| type II and III secretion system protein [Hirschia baltica ATCC 49814] Length = 535 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 156/497 (31%), Positives = 245/497 (49%), Gaps = 89/497 (17%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + +++ NK +L+ DV D+LV++P ADV+ S R + + K G++++I GK Sbjct: 56 RTLNLSQNKTAVLEFEEDVDDILVANPEIADVLARSKRRIAVLAKGKGESSIIFTNAQGK 115 Query: 108 QMLNLDILIE-RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 ++L+LD+++ + ++ L+ + +++ S I+ E V+ +VL G ++ D+ A++L++ Sbjct: 116 EILSLDVIVAGQGVSELQALIEQYVPRSAIKAEFVNGAIVLAGKSPSLSDADMAIQLAQQ 175 Query: 167 F----------LSQSGRNQ------------------------------YANSSSKKVMN 186 F +S G++Q AN S + + Sbjct: 176 FVVDDSPVINMISIEGKDQVLLKVRIVEMQRSVIKQLGVNLSGSMNIGELANKSVQTAYD 235 Query: 187 ------LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGP---SKSFAADFG 235 LL+ AGE L+V D G +S I+G S G S S+ G Sbjct: 236 AVTGEVLLDAAGE---ALQVLAPAAPWDQSVSFGTSNSLGISGESLGGMSLSPSYNNYVG 292 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 K S G FSV LER +RTLAEP LTA+SG+SA F +GG+ Sbjct: 293 DKLQSSAG-FSV-------------DMLERIGLVRTLAEPNLTALSGESAKFLAGGEFPV 338 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----------------- 338 + S G + +GV L FTP VLS RI +RI TEVSE Sbjct: 339 PSEVDSDGEVVLEFKPFGVGLGFTPVVLSESRISMRISTEVSELTSTGGYQIGGTTYVDG 398 Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + A +P+ +VR+ADTTVE+PSGG++V+AGL+++ Q + +P + +P++G+ Sbjct: 399 AGNTVSTPAVVIPALKVRRADTTVEMPSGGSLVIAGLIQEQTSQAMDKVPGVGNLPVIGS 458 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 LFR+ F ETE+ + TP+LV P + L PDD Y DAKA FF ++N++Y + Sbjct: 459 LFRSREFQNNETELVVIVTPYLVDPTDPKKLRSPDDGYVAAKDAKAIFFGKMNEVYAVEG 518 Query: 457 ASEVEGQNYKGAIGFIY 473 A E GA GFI+ Sbjct: 519 ADVEETAGINGA-GFIF 534 >gi|255262444|ref|ZP_05341786.1| outer membrane general secretion pathway protein, Secretin [Thalassiobium sp. R2A62] gi|255104779|gb|EET47453.1| outer membrane general secretion pathway protein, Secretin [Thalassiobium sp. R2A62] Length = 480 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 137/434 (31%), Positives = 230/434 (52%), Gaps = 24/434 (5%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ +N+ ++++ V ++ +++P AD+ S RT+Y+ GK G+ + L+G DG+ + Sbjct: 58 LNVPMNRAVVVESDVPFAELSIANPGIADISTLSDRTIYVLGKLPGRTTLTLLGPDGRLI 117 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N+D+ + DIA + L + + NI V +D +VL G+V + RA++L+E + Sbjct: 118 TNVDVHVTPDIAEFKERLSQILPGENIEVRTANDGIVLSGVVSSSARLTRALDLAERY-- 175 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGP 226 + +V NL+++ G QV L+V AE++R + K + +I G S++ Sbjct: 176 ----------APDRVSNLMSVGGTQQVMLRVRFAEMQRSVRKSLSSSVNIFGTGFSTAAG 225 Query: 227 SKSFAADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + + GG ++ + G+ F +L ALE +RTLAEP LTA+SGQ A Sbjct: 226 NINGVQAAGGGITTDATGAAFFGIDAGDIQFNVLLEALESKGVVRTLAEPNLTALSGQEA 285 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGV 343 F +GG++ V+ G T+V D+GV L F P V+ I L ++ VS + GV Sbjct: 286 HFLAGGEYPVP-VAQEGGTTTVEYKDFGVELTFLPVVVDQDLINLTLKASVSSIDTTNGV 344 Query: 344 NAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G + ++R R+ TTVE+ G + +AGLL+DD L +P L +P+LGALFR+ Sbjct: 345 QVGSDFTIAAFRTRETSTTVEMRDGESFAIAGLLQDDFTDLNGQVPWLGDVPVLGALFRS 404 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE--AS 458 + +NR ++E+ I TP LV P L+ P D + F F RV P+ A Sbjct: 405 AEYNRSQSELVIIVTPHLVTPTRGEALALPTDRVRPPTERDLFLFGRVAASDAPQSGAAG 464 Query: 459 EVEGQNYKGAIGFI 472 EV Q++ G+ G++ Sbjct: 465 EVAKQDFSGSYGYV 478 >gi|77462453|ref|YP_351957.1| Outer membrane general secretion pathway protein, secretin [Rhodobacter sphaeroides 2.4.1] gi|77386871|gb|ABA78056.1| Outer membrane general secretion pathway protein, Secretin [Rhodobacter sphaeroides 2.4.1] Length = 461 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 142/443 (32%), Positives = 236/443 (53%), Gaps = 40/443 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK G+ + L+G DG+ + Sbjct: 41 LNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGKAPGRTTLTLLGADGRLI 100 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N+D+ + D+A + LR+ + NI V +D +VL G V + RA++L+ + Sbjct: 101 SNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVTSTAKLDRALDLASRY-- 158 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQHSITGSSSG- 225 + +V NL+++ G QV LKV AE++R + K +G + + +GS G Sbjct: 159 ----------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKSLGSSIYARNGSGSVIGG 208 Query: 226 ----------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 PS + A G +S G FSV G L+ F+ +L ALE +RTLAEP Sbjct: 209 TGTLLQNGIPPSGASIATSGNGALSLG--FSV-GALE---FQVLLEALESKGVVRTLAEP 262 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 LTA+SGQ A F +GG++ V+S S+ +GV L+FTP V+ +I L I Sbjct: 263 NLTALSGQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVDGNQINLMINAA 321 Query: 336 VS---EPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 VS V ++G + +++ R+ TTVE+ G + +AGLL+DD + L +P L I Sbjct: 322 VSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRNLNGQVPWLGDI 381 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 PILGALFR++ + R ++E+ I TP LV P L+ P D + + F F RV Sbjct: 382 PILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEKDLFLFGRVT-- 439 Query: 452 YGPKEASEVEGQNYKGAIGFIYK 474 G A+EV Q++ G+ G++ + Sbjct: 440 -GRGAAAEVARQDFSGSYGYVME 461 >gi|114764946|ref|ZP_01444119.1| bacterial type II/III secretion system protein [Pelagibaca bermudensis HTCC2601] gi|114542658|gb|EAU45682.1| bacterial type II/III secretion system protein [Roseovarius sp. HTCC2601] Length = 471 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/450 (30%), Positives = 235/450 (52%), Gaps = 32/450 (7%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V G +S+ +N+ ++++ ++ +++P AD+ S RT+Y+ GK G + + Sbjct: 33 VRTGTESVLSVPMNRAVVVESDRPFAELSIANPAIADISSLSDRTIYVLGKTPGTTTLTI 92 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + +G+ + N+D+ + D+ + LR+ + + I V +D +VL G + + Q QRA+ Sbjct: 93 LDANGRLITNVDVRVAADVTEFKERLRQILPNEPIEVRTANDGIVLSGTISSAQKLQRAL 152 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +L+E + + ++V NL+ + G QV LKV AE++R + K + S+TG Sbjct: 153 DLAERY------------APERVSNLMTVGGVQQVMLKVRFAEMQRSVAKNLRSSLSVTG 200 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR-----FSFET-------VLHALERATAI 269 + G ++ A G + + G+ S+ D F + +L ALE Sbjct: 201 TLFGNDETTLASETGTLIGQSGNTSINVNDDAEGAFLLGFNSGALQVGILLEALESKGIS 260 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 RTLAEP LTA+SGQ A F +GG++ VS G T V+ +GV L+F P V+ I Sbjct: 261 RTLAEPNLTALSGQEARFLAGGEYPVP-VSQDDGTTIVSYKPFGVELNFVPRVVDGDLIN 319 Query: 330 LRIQTEVS--EPVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L ++ VS + G+ G++ ++R R+ TTVE+ G + +AGLL+DD + L + Sbjct: 320 LELEAAVSSIDSSNGITTGEITIDAFRRRETSTTVEMRDGESFAIAGLLQDDFRDLNGQV 379 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P L IP+LGALFR++ + RE++E+ I TP LV P L+ P D + F + Sbjct: 380 PWLGDIPVLGALFRSAEYEREQSELVIIVTPHLVTPTRGEVLALPTDRVRPPTEKDLFLY 439 Query: 446 NR-VNKIYGPKE--ASEVEGQNYKGAIGFI 472 R + P+ A+EV Q++ G+ G++ Sbjct: 440 GRTASDTRRPQSGGAAEVAKQDFTGSYGYV 469 >gi|260574616|ref|ZP_05842619.1| type II and III secretion system protein [Rhodobacter sp. SW2] gi|259023033|gb|EEW26326.1| type II and III secretion system protein [Rhodobacter sp. SW2] Length = 470 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 140/450 (31%), Positives = 235/450 (52%), Gaps = 40/450 (8%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + + + LN+ ++++ V ++ +++P AD+ S +++Y+ GK G+ + L+G DG+ Sbjct: 38 RALEVPLNRAVVVESDVPFAELSIANPGIADISTLSDKSIYVLGKAPGRTTLTLLGPDGR 97 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + N+++ + D+A + LR+ + I V +D +VL G V + RA++L+E + Sbjct: 98 LISNVEVQVSPDVAEFKERLRQILPGELIEVRTANDGIVLSGTVSSTAKLDRALDLAERY 157 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP- 226 + ++V NL+++ G QV LKV AE++R + K + +I GS+ G Sbjct: 158 ------------APERVSNLMSVGGTQQVMLKVRFAEMQRSVAKNLSASLAINGSTGGGN 205 Query: 227 ------SKSFAAD------FGGKFVSEGGDFSVKGVL------DRFSFETVLHALERATA 268 S F A F G S+ G + +GV F +L ALE Sbjct: 206 VGVNAGSGQFTAGGTRDGVFAG--TSQSGADNSEGVATIGFSAGSLQFAVLLEALESKGV 263 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 +RTLAEP LTA+SGQ A F +GG++ V+ +G+ SV +GV ++FTP V+ I Sbjct: 264 VRTLAEPNLTALSGQEAKFLAGGEYPIP-VADGSGSISVEYKPFGVEMNFTPVVVDGDII 322 Query: 329 GLRIQTEVSE---PVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L I VS V NAG + +++ R+ TTVE+ G + +AGLL+DD + L Sbjct: 323 NLTINAAVSSIDSTVTVQNAGFTLNAFKRRETSTTVEMRDGESFAIAGLLQDDFRDLNGQ 382 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +P L IPILGALFR++ + R ++E+ I TP LV P L+ P D + + + F Sbjct: 383 VPWLGDIPILGALFRSAEYQRAQSELVIIVTPHLVTPTRGEALALPTDRIRIPTERELFL 442 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 F + + G EV Q++ G+ G++ + Sbjct: 443 FGKTSGARG--ATGEVARQDFSGSYGYVME 470 >gi|221638316|ref|YP_002524578.1| Type II and III secretion system protein [Rhodobacter sphaeroides KD131] gi|221159097|gb|ACM00077.1| Type II and III secretion system protein precursor [Rhodobacter sphaeroides KD131] Length = 461 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/437 (30%), Positives = 232/437 (53%), Gaps = 28/437 (6%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK G+ + L+G DG+ + Sbjct: 41 LNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGKAPGRTTLTLLGADGRLI 100 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N+D+ + D+A + LR+ + NI V +D +VL G V + RA++L+ + Sbjct: 101 SNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVTSTAKLDRALDLASRY-- 158 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQHSITGSSSGP 226 + +V NL+++ G QV LKV AE++R + K +G + + +GS G Sbjct: 159 ----------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKSLGSSIYARNGSGSVIGG 208 Query: 227 SKSFAAD----FGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + + G + G G S+ + F+ +L ALE +RTLAEP LTA+S Sbjct: 209 TGTLLQNGIPPSGAPISTSGNGALSLGFSVGALEFQVLLEALESKGVVRTLAEPNLTALS 268 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---E 338 GQ A F +GG++ V+S S+ +GV L+FTP V+ +I L I VS Sbjct: 269 GQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVDGNQINLMINAAVSSIDN 327 Query: 339 PVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 V ++G + +++ R+ TTVE+ G + +AGLL+DD + L +P L IPILGAL Sbjct: 328 TVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRNLNGQVPWLGDIPILGAL 387 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 FR++ + R ++E+ I TP LV P L+ P D + + F F RV G A Sbjct: 388 FRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEKDLFLFGRVT---GRGAA 444 Query: 458 SEVEGQNYKGAIGFIYK 474 +EV Q++ G+ G++ + Sbjct: 445 AEVARQDFSGSYGYVME 461 >gi|126461331|ref|YP_001042445.1| type II and III secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|126102995|gb|ABN75673.1| type II and III secretion system protein [Rhodobacter sphaeroides ATCC 17029] Length = 461 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/437 (30%), Positives = 232/437 (53%), Gaps = 28/437 (6%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK G+ + L+G DG+ + Sbjct: 41 LNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGKAPGRTTLTLLGADGRLI 100 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N+D+ + D+A + LR+ + NI V +D +VL G V + RA++L+ + Sbjct: 101 SNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVTSTAKLDRALDLASRY-- 158 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQHSITGSSSGP 226 + +V NL+++ G QV LKV AE++R + K +G + + +GS G Sbjct: 159 ----------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKSLGSSIYARNGSGSVIGG 208 Query: 227 SKSFAAD----FGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + + G + G G S+ + F+ +L ALE +RTLAEP LTA+S Sbjct: 209 TGTLLQNGIPPSGAPISTSGNGALSLGFSVGALEFQVLLEALESKGVVRTLAEPNLTALS 268 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---E 338 GQ A F +GG++ V+S S+ +GV L+FTP V+ +I L I VS Sbjct: 269 GQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVDGNQINLMINAAVSSIDN 327 Query: 339 PVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 V ++G + +++ R+ TTVE+ G + +AGLL+DD + L +P L IPILGAL Sbjct: 328 TVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRNLNGQVPWLGDIPILGAL 387 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 FR++ + R ++E+ I TP LV P L+ P D + + F F RV G A Sbjct: 388 FRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEKDLFLFGRVT---GRGAA 444 Query: 458 SEVEGQNYKGAIGFIYK 474 +EV Q++ G+ G++ + Sbjct: 445 AEVARQDFSGSYGYVME 461 >gi|332560337|ref|ZP_08414659.1| Type II and III secretion system protein precursor [Rhodobacter sphaeroides WS8N] gi|332278049|gb|EGJ23364.1| Type II and III secretion system protein precursor [Rhodobacter sphaeroides WS8N] Length = 466 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/437 (30%), Positives = 232/437 (53%), Gaps = 28/437 (6%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK G+ + L+G DG+ + Sbjct: 46 LNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGKAPGRTTLTLLGADGRLI 105 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N+D+ + D+A + LR+ + NI V +D +VL G V + RA++L+ + Sbjct: 106 SNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVTSTAKLDRALDLASRY-- 163 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQHSITGSSSGP 226 + +V NL+++ G QV LKV AE++R + K +G + + +GS G Sbjct: 164 ----------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKSLGSSIYARNGSGSVIGG 213 Query: 227 SKSFAAD----FGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + + G + G G S+ + F+ +L ALE +RTLAEP LTA+S Sbjct: 214 TGTLLQNGIPPSGNPISTSGNGALSLGFSVGALEFQVLLEALESKGVVRTLAEPNLTALS 273 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---E 338 GQ A F +GG++ V+S S+ +GV L+FTP V+ +I L I VS Sbjct: 274 GQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVDGNQINLMINAAVSSIDN 332 Query: 339 PVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 V ++G + +++ R+ TTVE+ G + +AGLL+DD + L +P L IPILGAL Sbjct: 333 TVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRNLNGQVPWLGDIPILGAL 392 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 FR++ + R ++E+ I TP LV P L+ P D + + F F RV G A Sbjct: 393 FRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEKDLFLFGRVT---GRGAA 449 Query: 458 SEVEGQNYKGAIGFIYK 474 +EV Q++ G+ G++ + Sbjct: 450 AEVARQDFSGSYGYVME 466 >gi|146276361|ref|YP_001166520.1| type II and III secretion system protein [Rhodobacter sphaeroides ATCC 17025] gi|145554602|gb|ABP69215.1| type II and III secretion system protein [Rhodobacter sphaeroides ATCC 17025] Length = 461 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 141/441 (31%), Positives = 236/441 (53%), Gaps = 36/441 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK G+ + L+G DG+ + Sbjct: 41 LNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGKAPGRTTLTLLGADGRLI 100 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N+D+ + D+A + LR+ + NI V +D +VL G V + + RA++L+ Sbjct: 101 SNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVTSAERLDRALDLA----- 155 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQHSITGSSSGP 226 N+YA +V NL+++ G QV LKV AE++R + K +G + + +GS G Sbjct: 156 ----NRYA---PDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKSLGSSIYARNGSGSVIGG 208 Query: 227 SKSFAAD----FGGKFVSE-----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + + G + G FSV G L+ F +L ALE +RTLAEP L Sbjct: 209 TGTLLQNGIPPSGAPITTAATGALGLGFSV-GALE---FSVLLEALESKGVVRTLAEPNL 264 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TA+SGQ A F +GG++ V+S ++ +GV L+FTP V+ +I L I VS Sbjct: 265 TALSGQEAKFLAGGEYPIP-VASGDEKIAIEYKPFGVELNFTPVVVDGSQINLMINAAVS 323 Query: 338 ---EPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 V +AG + +++ R+ TTVE+ G + +AGLL+DD + L +P L IPI Sbjct: 324 SIDNTVSLESAGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRNLNGQVPWLGDIPI 383 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LGALFR++ + R ++E+ I TP LV P L+ P D + + + F F RV G Sbjct: 384 LGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRIKLPSEKELFLFGRVT---G 440 Query: 454 PKEASEVEGQNYKGAIGFIYK 474 A EV Q++ G+ G++ + Sbjct: 441 RGAAGEVARQDFSGSYGYVME 461 >gi|84687277|ref|ZP_01015157.1| Outer membrane general secretion pathway protein, Secretin [Maritimibacter alkaliphilus HTCC2654] gi|84664710|gb|EAQ11194.1| Outer membrane general secretion pathway protein, Secretin [Rhodobacterales bacterium HTCC2654] Length = 474 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 139/451 (30%), Positives = 229/451 (50%), Gaps = 34/451 (7%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G + +++ +N+ ++++ ++ +++P AD+ S RT+Y+ GK+ G+ + L+ Sbjct: 36 GVAETLNVPMNRAVVVESDQPFAEISIANPGIADISTLSDRTIYVLGKSQGRTTLTLLAP 95 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 DG + N+++ + D++ + LR+ + I V +D +VL G V +I RA++L+ Sbjct: 96 DGTLISNVEVQVTPDLSEFKERLRQILPGEPIEVRTANDGIVLSGTVTSIAALDRALDLA 155 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI----GFQHSIT 220 E + + KV NLL++ G QV LKV AE++R + K + GF +I Sbjct: 156 ERY------------APDKVSNLLSVGGTQQVMLKVRFAEMQRSVTKSLSSSLGFGTNIN 203 Query: 221 G-------SSSGPSKSFAADFGGKFVSEGGD----FSVKGVLDRFSFETVLHALERATAI 269 G + G + A G +S G D F+ F +L ALE + Sbjct: 204 GLGGSIGTGALGNQANLDAASAGDLISTGNDRTGAFTFGFNAGALQFAVMLEALENKGMV 263 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 RTLAEP LTA+SGQ ASF +GG++ +V + GA + +GV L FTP V+ I Sbjct: 264 RTLAEPNLTALSGQEASFLAGGEYPIPSVQEN-GAVVIDYKPFGVELTFTPRVVDQDIIN 322 Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L++ VS V GD + +++ R+ TTVE+ G + +AGLL+DD + L + Sbjct: 323 LQMTASVSGLDNSVTYGDGAISVNAFKRRETSTTVEMRDGQSFAIAGLLQDDFRDLNGQV 382 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P L +PILGALFR++ + R ++E+ I TP LV P L+ P D +A F Sbjct: 383 PWLGDVPILGALFRSADYERSQSELVIIVTPHLVTPTRGEALALPTDRVRPPSEADLFLR 442 Query: 446 NRVNKIYGPK--EASEVEGQNYKGAIGFIYK 474 P A EV Q++ G+ G++ + Sbjct: 443 GNTAAPNRPTTGAAGEVARQDFTGSYGYVME 473 >gi|126725970|ref|ZP_01741812.1| Outer membrane general secretion pathway protein, Secretin [Rhodobacterales bacterium HTCC2150] gi|126705174|gb|EBA04265.1| Outer membrane general secretion pathway protein, Secretin [Rhodobacterales bacterium HTCC2150] Length = 466 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 136/450 (30%), Positives = 237/450 (52%), Gaps = 42/450 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ +N+ I+++ +V V++P+ AD+ S +T+Y+ GK G+ + L+ G+ + Sbjct: 30 LNVPMNRAIVVETETSFGEVSVANPSIADISTLSDKTIYVLGKAPGRTTLTLLDGTGRLI 89 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N+D+ + D+A + L++ + I V +D +V+ G V +I RA++L+ Sbjct: 90 SNVDVHVTPDVAEFKERLQQILPGEPIEVRTANDGIVMSGTVSSIGKLDRALDLA----- 144 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI----GFQHSITGSS-- 223 N+YA +V NL+++ G QV LK+ AE++R + K + F S+ G++ Sbjct: 145 ----NRYA---PNRVSNLMSVGGTQQVMLKIRFAEMQRSVAKNLTGSLAFSGSLGGNAGA 197 Query: 224 SGPSKSFAADFGGKFVSEG-------------GDFSVKGVLDRFSFETVLHALERATAIR 270 +G S++F+ + +G G FS+ F+ +L ALE +R Sbjct: 198 TGASQTFSDGSNLANLYDGDSSTSATSSQDRDGLFSIGFSNGTIGFQVLLEALETKGVVR 257 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 TLAEP LTA+SGQ A F +GG++ + + G+ + +G+ + FTPTV+ I L Sbjct: 258 TLAEPNLTALSGQKADFLAGGEYPTPAIDDN-GSPIIEYKPFGIEMEFTPTVVDGDLINL 316 Query: 331 RIQTEVSEPVIGVNAGDMPSYRV-----RKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +++T VS ++A + + V RKA TTVE+ G + +AGLL+DD + Sbjct: 317 QLKTSVSSLDTSISAQNSAGFTVFGFKTRKASTTVEMRDGQSFAIAGLLQDDFTDQSGQV 376 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P L +PI+GALFR+S + R+++E+ + TP LV P L+ P D + + + F F Sbjct: 377 PWLGDVPIIGALFRSSEYERKQSELVVIVTPHLVTPTRGEALALPTDRVQIPTERELFLF 436 Query: 446 NRV---NKIYGPKEASEVEGQNYKGAIGFI 472 V KI G A EV Q++ G+ G++ Sbjct: 437 GNVAGKKKIKG--AAGEVARQDFSGSYGYV 464 >gi|260426909|ref|ZP_05780888.1| type II and III secretion system protein [Citreicella sp. SE45] gi|260421401|gb|EEX14652.1| type II and III secretion system protein [Citreicella sp. SE45] Length = 473 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 134/456 (29%), Positives = 232/456 (50%), Gaps = 34/456 (7%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 N+ V G +++ +N+ ++++ ++ +++P AD+ S RT+Y+ GK G Sbjct: 29 NLRVVRTGTESVLNVPMNRAVVVESDQPFAELSIANPAIADISSLSERTIYVLGKTPGTT 88 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 + ++ +G+ + N+D+ + D+ + LR+ + +I V +D +VL G V + Q Sbjct: 89 TLTILDGNGRLITNVDVRVAADVTEFKERLRQILPGESIEVRTANDGIVLSGTVSSAQKL 148 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 QRA++L++ + + ++V NL+ + G QV LKV AE++R + K + Sbjct: 149 QRALDLAQRY------------APERVSNLMTVGGVQQVMLKVRFAEMQRSVSKNLRSSL 196 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFS-------------VKGVLDRFSFETVLHALE 264 SI G G + G +++ G + + G +L ALE Sbjct: 197 SIGGPIFGEDEITIGSETGTWLNSGNSYGDAVTVADGTESALLLGFNGAIEVGILLEALE 256 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +RTLAEP LTA+SGQ A F +GG++ VS G SVT +GV L+F PTV+ Sbjct: 257 SKGMVRTLAEPNLTALSGQEAKFLAGGEYPVP-VSQEDGKLSVTYKPFGVELNFVPTVID 315 Query: 325 PGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I L+++ VS I +A + ++R R+ TTVE+ G + +AGLL+DD + Sbjct: 316 GDLINLQLEAAVSSIDSSNGITTDAISIDAFRRRETSTTVEMRDGESFAIAGLLQDDFRD 375 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 + +P + IP+LGALFR++ + R+++E+ I TP LV P L+ P D + Sbjct: 376 VNGQVPWIGDIPVLGALFRSAEYERQQSELVIIVTPHLVTPTRGEALALPTDRVMPPTEK 435 Query: 441 KAFFFNRV--NKIYGPKE--ASEVEGQNYKGAIGFI 472 F F R + P+ A+EV Q++ G+ G++ Sbjct: 436 DLFLFGRTSSDDARRPRTGGAAEVARQDFTGSYGYV 471 >gi|46204251|ref|ZP_00050268.2| COG4964: Flp pilus assembly protein, secretin CpaC [Magnetospirillum magnetotacticum MS-1] Length = 472 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 134/408 (32%), Positives = 217/408 (53%), Gaps = 51/408 (12%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G+ +++ + + +I+ +P D ++V V++P A+ VV S R ++L G G ++ ++ Sbjct: 47 GQSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAVVRSSRKLFLIGIENGATSIFVMDA 106 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 +G+Q+ LD+ I RDI L +L++ + +I V+ V D++VL G V + ++Q+A++++ Sbjct: 107 EGRQIAALDVTIARDINVLRQSLQQSLPGRHIDVKAVGDSLVLSGGVSSASEAQQAIDIA 166 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 F+ + ++ V+N L I +DQV ++VT+ EV R ++KQ G + S+ Sbjct: 167 NAFVGIA--GGAGGAARGAVINNLTIRNKDQVMIRVTVVEVARSVIKQFGISTTGNWSAL 224 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDR-------------FSFETVLHALERATAIRT 271 P D G F++ F + G FS + L A E+A R Sbjct: 225 NP-----LDSTGNFLTNNTGFPLTGAFTPSGNALTASVRSGGFSLQATLRAFEQAGVSRI 279 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSP 325 LAEPTLTAISG++A FT+GG+ + + S GA S+ YGV L FTP VL+ Sbjct: 280 LAEPTLTAISGEAAKFTAGGE-IPVPANCSVGAVGSACTISLVYKPYGVSLSFTPVVLAE 338 Query: 326 GRIGLRIQTEVSE----------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 RI +R+ T+V+E PV P+ R R ++TTVEL SG T++ Sbjct: 339 NRISIRVATDVTELDTQNSFSYNLNGRVVPV--------PATRRRNSETTVELASGATMM 390 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 AGL++ + G+P L +PILGALFR+ F R+E E+ I TP Sbjct: 391 TAGLIQQQNKGTINGLPGLMNLPILGALFRSRDFQRDENELMILVTPI 438 >gi|94497254|ref|ZP_01303826.1| type II and III secretion system protein [Sphingomonas sp. SKA58] gi|94423359|gb|EAT08388.1| type II and III secretion system protein [Sphingomonas sp. SKA58] Length = 486 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 144/438 (32%), Positives = 227/438 (51%), Gaps = 39/438 (8%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 P NAA ++ D I +S+G ++VI L P + DV+++DP DV V S + Sbjct: 21 PTSALNAATSSMQDNAI----LLSVGGSRVINL--PAKMSDVVIADPEVVDVHVRSQNQL 74 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 YL K G+ V +GK + + + + +I ++ LR + +NI V ++ V+L Sbjct: 75 YLIAKKAGETTVFATAPNGKVLFSGTVRVGNNITSIDDMLRIAMPGANIAVNTMNGMVLL 134 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G ++ +D+ L++ F+ + V++ L +A QV L+V IAEV + Sbjct: 135 TGTIQAPEDAAEVERLTQAFVGKD----------VTVVSRLRMATPLQVMLQVKIAEVAK 184 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFA--------ADFGGKFVSEGGDFSVKGVL 251 D+ +IG + + G+ G + FA DF +GG +S+ GV Sbjct: 185 DVGHKIGTNFASVDRSGGKVAGNVGGGLRDFAQYNADTNSWDFTNPI--DGG-YSLGGVA 241 Query: 252 DRFSFETV--LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + L E + TLA+P LTA+SG++ASF +GG++ Y TVS+ S+ Sbjct: 242 RILGMDIAGALDLAESSGLASTLAQPNLTALSGETASFLAGGEYPY-TVSNGLQGNSIEF 300 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 YGV L FTPTVL+ GRI LR++ VS +NA ++P+ + R A+TTVEL SG + Sbjct: 301 KQYGVQLAFTPTVLADGRISLRVRPTVSSLDFSINA-NVPALKSRTAETTVELGSGQAFM 359 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 +AGLL ++ +P L +PILG+LF++ +F R ETE+ I TP+LVKP+ D+ Sbjct: 360 IAGLLNNEASNNVNKVPGLGNLPILGSLFKSRQFQRNETELVIVVTPYLVKPMNASDVRL 419 Query: 430 PDDHYSVEDDAKAFFFNR 447 P D + D + F R Sbjct: 420 PTDGFRNADLGEGLFLQR 437 >gi|89053488|ref|YP_508939.1| type II and III secretion system protein [Jannaschia sp. CCS1] gi|88863037|gb|ABD53914.1| type II and III secretion system protein [Jannaschia sp. CCS1] Length = 466 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 140/460 (30%), Positives = 229/460 (49%), Gaps = 31/460 (6%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 PI A A + + VE + + +N+ ++++ + ++ V++P AD+ S R++ Sbjct: 21 PISGAQAQGLRV--VEGESTGTLRVPMNRAVVVEAEMLFAELSVANPAIADIATLSERSI 78 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 Y+ G+ G+ + L+G DG + N++I + D+A L LR I + V +D +VL Sbjct: 79 YVLGRAPGRTTMTLLGADGSLIANVEIQVVPDVAELRERLREIIPGEPVEVRTANDGIVL 138 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + RA+EL+E + + ++ NL+ + G+ QV L+V AE++R Sbjct: 139 SGTVGSAFAVDRAMELAERY------------APGRISNLMMVGGQQQVMLQVRFAEMQR 186 Query: 208 DILKQIGFQHSI--TGSSSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFS 255 + +++ I TG + G S GG G G V Sbjct: 187 TVRQELSASLGIGSTGGNFGTSVGAGNLQGGTGFGTGNLPGGLDGRNGGIGVSFAAGGLQ 246 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 +L ALE +RTLAEP LTA+SG +ASF +GGQ T S S G T++ D+GV Sbjct: 247 LSVLLEALESNGMVRTLAEPNLTALSGATASFLAGGQFPVPTESES-GGTTIEFVDFGVQ 305 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L FTPTV+ I L + E+S + P+ R A T VE+ G + +AGLL+ Sbjct: 306 LDFTPTVVGDHVINLALDAEISSIGEIIATTGAPAINTRNASTVVEMRDGDSFAIAGLLQ 365 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 DD +P L +P+LGALFR++ ++R ++E+ I T LV PV L+ P D Sbjct: 366 DDFTNSVAEVPWLGDLPVLGALFRSASYSRSQSELVIIITAHLVSPVNGEALALPTDRVR 425 Query: 436 VEDDAKAFFFNRVNKIYGPK---EASEVEGQNYKGAIGFI 472 + +++ FF +V P+ A +V Q++ G+ G++ Sbjct: 426 IPTESELFFQGQVTG-SSPRPGTAAGDVAQQDFSGSYGYV 464 >gi|254440636|ref|ZP_05054129.1| Putative phospholipid-binding domain family [Octadecabacter antarcticus 307] gi|198250714|gb|EDY75029.1| Putative phospholipid-binding domain family [Octadecabacter antarcticus 307] Length = 474 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 140/457 (30%), Positives = 230/457 (50%), Gaps = 59/457 (12%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ +N+ ++++ V ++ +++P+ AD+ S RT+Y+ GK G+ + L+G DG+ + Sbjct: 41 LNVPMNRAVVVESDVPFTELSIANPSIADISSLSDRTIYVLGKEPGRTTLTLLGGDGRLI 100 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N+++ + DIA + L + + NI V +D +VL G V +I RA+EL+ Sbjct: 101 TNVEVHVTPDIAEFKERLEQILPGENIEVRTANDGIVLSGTVSSIARLDRALELA----- 155 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD--------------------- 208 N+YA +V NL+++ G QV L+V AE++R Sbjct: 156 ----NRYA---PDRVSNLMSVGGTQQVMLRVRFAEMQRSVSKSLSSSLALGGSTLGGDLG 208 Query: 209 -------ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + G +++G++ P+ + D G F+ F+ GV +L Sbjct: 209 LALGTGATVGNTGRLSTLSGAT--PANN---DNAGAFLF---GFNAGGV----EVGILLE 256 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 ALE +RTLAEP LTA+SGQ ASF +GG++ +S A +V +G+ L FTP Sbjct: 257 ALENRGVVRTLAEPNLTALSGQEASFLAGGEYPVP-ISQDGSAITVEYKPFGISLSFTPR 315 Query: 322 VLSPGRIGLRIQTEVS--EPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 V+ I L + VS +P G N + ++R R+ TTVE+ G + +AGLL DD Sbjct: 316 VIDGDIINLELHASVSSLDPTNGFSQNGFSIDAFRTRETSTTVEMRDGESFAIAGLLSDD 375 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 L +P IP+LGALFR++ ++R++TE+ I TP LV P L+ P D Sbjct: 376 FVDLSGQVPWAGDIPVLGALFRSAEYSRQQTELVIIVTPHLVTPTRGDALALPTDRVRPP 435 Query: 438 DDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFI 472 + F F RV P+ A EV Q++ G+ G++ Sbjct: 436 TERDLFLFGRVTAEDAPQSGGAGEVARQDFSGSYGYV 472 >gi|149915642|ref|ZP_01904168.1| bacterial type II/III secretion system protein [Roseobacter sp. AzwK-3b] gi|149810534|gb|EDM70377.1| bacterial type II/III secretion system protein [Roseobacter sp. AzwK-3b] Length = 467 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 136/454 (29%), Positives = 233/454 (51%), Gaps = 32/454 (7%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 N+ V G + +++ +N+ ++++ V ++ +++P+ AD S RT+Y+ GK G+ Sbjct: 29 NLQVVRNGAARDLNVTMNRAVVVESDVPFAELSIANPSIADFSTLSDRTIYVLGKAPGRT 88 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 + L+ G+ + N++I + D++ + L++ + + I V +D +VL G V + Sbjct: 89 TLTLLDDSGRLITNVEIHVSTDVSEFKERLQQILPNERIEVRTANDGIVLSGSVSSTARM 148 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 +RA+ L++ + + +V NL+ +AG QV LKV AE++R + KQ+ Sbjct: 149 ERALSLAQRY------------APDRVSNLMVVAGNQQVMLKVRFAEMQRSVSKQL--ST 194 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFE-------TVLHALER 265 S+ + G S + AA G S G + + + F F+ +L ALE Sbjct: 195 SLAVDALGVSGNGAALAGSNLPSAGANRVGITANNNAGVAFFGFDIGSVEIGILLEALET 254 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 +RTLAEP LTA+SGQ A F +GG++ V+ TS+ +GV L+F P V+ Sbjct: 255 KGVVRTLAEPNLTALSGQEAKFLAGGEYPVP-VAQDNNTTSIEFKPFGVELNFIPRVVDG 313 Query: 326 GRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 I L + VS +P G+N G ++ ++R R TTV+L G + +AGLL+DD + Sbjct: 314 DIINLEMAAAVSSIDPTNGINTGAFNVDAFRRRDTSTTVQLRDGESFAIAGLLQDDFRDT 373 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P L +PILGALFR++ + R +TE+ I + LV P L+ P D + + Sbjct: 374 NAQVPWLGDVPILGALFRSADYARAQTELVIIVSAHLVTPTRGEALALPTDRVRLPSEMD 433 Query: 442 AFFFNRV-NKIYGPKEASEVEGQNYKGAIGFIYK 474 F RV N A EV Q++ G+ G++ + Sbjct: 434 LFLNGRVLNSNIPSGTAGEVARQDFTGSYGYVME 467 >gi|159043678|ref|YP_001532472.1| type II and III secretion system protein [Dinoroseobacter shibae DFL 12] gi|157911438|gb|ABV92871.1| type II and III secretion system protein [Dinoroseobacter shibae DFL 12] Length = 474 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 134/451 (29%), Positives = 226/451 (50%), Gaps = 43/451 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + +N+ ++++ + ++ V++P AD+ S R++Y+ GK+ G+ + L+G DG+ + Sbjct: 41 LQVPMNRAVVVESDIPFAELSVANPGIADIATLSDRSIYVLGKSQGRTTMTLLGADGRLI 100 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N+D+ + DIA + L + + NI V +D VVL G ++ RA++L++ + Sbjct: 101 TNVDVQVTPDIAEFKERLEQILPGENIEVRTANDGVVLSGTASSVTAMDRALDLAQRY-- 158 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 + +V NL++I G QV LKV AE++R + KQ+ +T SG + Sbjct: 159 ----------APDRVSNLMSIGGSQQVMLKVRFAEMQRSVSKQL--SGGLTAIYSGTDGA 206 Query: 230 FAADFGGKFVSEGGDFSVKGV--------------------LDRFSFETVLHALERATAI 269 F+ G +++GG S+ G + S +L ALE + Sbjct: 207 FSVGLGSGGLTDGG--SIGGANSTEFTLNPEAAGTIGLGFNIGNVSLGILLEALESKGVV 264 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 RTLAEP LT +SGQ ASF +GG++ V+ G SV +GV L F PTVL I Sbjct: 265 RTLAEPNLTTLSGQEASFLAGGEYPIP-VADGDGGISVEYKPFGVELDFIPTVLDDDVIN 323 Query: 330 LRIQTEV----SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L + V S I ++ + + R+ TTV+L G + +AGLL+DD + + Sbjct: 324 LELGAAVSALDSSASIITDSLTVQGFSRRETLTTVQLRDGDSFAIAGLLEDDFRDFAGQV 383 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P L IP+LGALFR++ + R ++E+ I T LV P L P D + + + F Sbjct: 384 PWLGDIPVLGALFRSADYARSQSELVIIVTAHLVSPTRGEALVLPTDRVRIPSEREFFLN 443 Query: 446 NRVNKIYGPKE--ASEVEGQNYKGAIGFIYK 474 + + P+ A EV Q++ G+ G++ + Sbjct: 444 GNLVREDTPRRGAAGEVAQQDFSGSYGYVLE 474 >gi|126733573|ref|ZP_01749320.1| bacterial type II/III secretion system protein [Roseobacter sp. CCS2] gi|126716439|gb|EBA13303.1| bacterial type II/III secretion system protein [Roseobacter sp. CCS2] Length = 476 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 139/453 (30%), Positives = 224/453 (49%), Gaps = 51/453 (11%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +S+ +++ ++++ V ++ +++P AD+ S RT+Y+ GK G+ + L+G +G+ + Sbjct: 42 LSVPMSRAVVVESDVPFTELSIANPGIADISSLSDRTIYVLGKEPGRTTLTLLGENGRLI 101 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N++I + D+A + L + + NI V +D +VL G V +I RA++L+E + Sbjct: 102 TNVEIHVSPDMAEFKERLTQILPGENIEVRTANDGIVLSGTVSSIARLDRALDLAERY-- 159 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI---------LKQIGF----- 215 + ++V NL+ + G QV LKV AE++R + L +GF Sbjct: 160 ----------APERVSNLMMVGGTQQVMLKVRFAEMQRSVSKALSTSVALSGLGFDDDVS 209 Query: 216 ----------QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 Q +I G+ SG A+ G G G+L L ALE Sbjct: 210 ITGGTNRTIGQSAINGALSGSVPGSNANNGAVLFGFGAGGLEVGIL--------LEALET 261 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 +R+LAEP LTA+SGQ A+F +GG++ T + G SV +GV L F P V+ Sbjct: 262 RGVVRSLAEPNLTALSGQEATFLAGGEYPVPTANDG-GTISVEFRPFGVELSFVPRVVDH 320 Query: 326 GRIGLRIQTEVS--EPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 I L + VS +P G N + ++ R+ TTVE+ G + +AGLL DD L Sbjct: 321 DIINLELSAAVSAIDPSNGFQANGFSVDAFTRRETSTTVEMRDGESFAIAGLLSDDFTDL 380 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P + IP+LGALFR++ + R +TE+ I TP LV P L+ P D + Sbjct: 381 NGQLPWVGDIPVLGALFRSAEYARRQTELVIIVTPHLVSPTRGEALALPTDRVRPPTEQG 440 Query: 442 AFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFI 472 F F +V GP A EV Q++ G+ G++ Sbjct: 441 LFLFGQVANEGGPSSGGAGEVARQDFSGSYGYV 473 >gi|84501676|ref|ZP_00999848.1| bacterial type II/III secretion system protein [Oceanicola batsensis HTCC2597] gi|84390297|gb|EAQ02856.1| bacterial type II/III secretion system protein [Oceanicola batsensis HTCC2597] Length = 474 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 144/509 (28%), Positives = 243/509 (47%), Gaps = 77/509 (15%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T+ + + LF + P +A I V ++++ +N+ ++++ V Sbjct: 2 TYSSYLRAALFGMTLATGSFPVTAQAERLTI----VNRNSESRLNVAINRAVVVESDVSF 57 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 ++ +++P AD+ S ++Y+ GK G + L+ +G+ + N+D+++ DI+ + Sbjct: 58 AELSIANPQIADISSLSDTSIYVLGKTPGITTLTLLDAEGRLISNVDVVVSADISEFKER 117 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 LR+ + D I V +D +V+ G+V + Q QRA++L+E + + ++V N Sbjct: 118 LRQILPDEKIEVRTANDGIVMSGVVSSSQKLQRALDLAERY------------APERVSN 165 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 L+++ G QV LKV AE++R + K + S S AAD G F GG+ Sbjct: 166 LMSVGGVQQVMLKVRFAEMQRSVSKSL-------------SASLAAD-GSIF---GGNVG 208 Query: 247 VKGVLDRFSFE---------------------------------TVLHALERATAIRTLA 273 V G R+S +L ALE +RTLA Sbjct: 209 VSGGTGRYSNAGNQGNGLGGNLPTPNTNSGATLLGFNAGAVQVGVLLEALEAKGVVRTLA 268 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 EP LTA+SGQ A F +GG++ V+ G +V +GV ++F P V+ I L +Q Sbjct: 269 EPNLTALSGQEAKFLAGGEYPVP-VAQDGGTVTVEFKPFGVEMNFIPRVVDDDIINLELQ 327 Query: 334 TEVS--EPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 VS +P G +NA + ++ R+ TTVEL G + +AGLL+DD + +P L Sbjct: 328 AAVSAIDPNNGFELNAFRIDAFTRRETSTTVELRDGDSFAVAGLLQDDFRDTNSQVPWLG 387 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR-- 447 IP++GALFR++ + R ++E+ I T LV P L+ P D + F F R Sbjct: 388 DIPVIGALFRSADYQRNQSELVIIITAHLVSPTRGEALALPTDRVKPPSEKDLFLFGRTA 447 Query: 448 --VNKIYGPKEASEVEGQNYKGAIGFIYK 474 K+ G A EV Q++ G+ G++ + Sbjct: 448 KDTRKLRGA--AKEVAKQDFNGSYGYVME 474 >gi|302037439|ref|YP_003797761.1| putative pilus assembly protein CpaC [Candidatus Nitrospira defluvii] gi|300605503|emb|CBK41836.1| putative Pilus assembly protein CpaC [Candidatus Nitrospira defluvii] Length = 485 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 135/440 (30%), Positives = 216/440 (49%), Gaps = 35/440 (7%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A A + D++ + +S+ K ++L P+ +++P AD +V SP+ +Y+ G Sbjct: 28 AQAHEVASPDIQTRVPRSLSLITGKSLVLDSPIPFSRASIANPDIADTLVLSPKQLYVIG 87 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGM 150 K G N+ L +G D+ + D+ L+ L + D N ++V D + L G Sbjct: 88 KAAGTTNLTLWDAEGSVYALYDLAVSPDLTRLKEHLHQLFPDENDLQVMAAHDRLTLTGT 147 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V + AV+++ET+ Q KV+NLL + G QV L+V +AE+ R +L Sbjct: 148 VSSATHVSEAVDVAETYARQ------------KVINLLRVGGLHQVMLEVRVAEMERTLL 195 Query: 211 KQIGFQHSIT--GSSSG---------------PSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +++G + G S G PS + A G VS+ + ++ Sbjct: 196 RRLGVNLAAASGGQSFGVSSLKNLATVLPPTDPSAALVAGPVGLGVSQAVNALLRFQTGS 255 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 S+ + AL+ ++ LAEPTL A+SGQ A F +GG+ V + G T++ +G Sbjct: 256 TSWTGFIDALKEENLVKVLAEPTLVALSGQEAHFLAGGEFPIP-VPQAFGVTTIQFKKFG 314 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + L+F P VLSP RI + + EVS+ + + +P+ R+A T VEL G + Sbjct: 315 IQLNFNPVVLSPTRISVTVAPEVSDLDFANGLSLQGFVVPAITTRRASTVVELEDGQSFA 374 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 +AGLL+D +++ P+L IPILGALFR+S F + ETE+ I TP LV PV +L Sbjct: 375 VAGLLRDTVRETVSKFPVLGDIPILGALFRSSSFQKNETELVIIVTPHLVTPVTEAELPL 434 Query: 430 PDDHYSVEDDAKAFFFNRVN 449 P Y DD + R+ Sbjct: 435 PTGQYLEPDDVDFYLMGRLQ 454 >gi|294012433|ref|YP_003545893.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] gi|292675763|dbj|BAI97281.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] Length = 499 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 142/435 (32%), Positives = 227/435 (52%), Gaps = 34/435 (7%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 P NAA ++ D I +S+G +KVI L P + DV++ DP DV V S + Sbjct: 31 PTSALNAAPASMQDNAI----LLSVGGSKVINL--PAKMSDVVIGDPDVVDVHVRSQNQL 84 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 YL K G+ V +GK + + + + ++ ++ L+ + +++I V ++ V+L Sbjct: 85 YLIAKKAGETTVFATATNGKVLFSGTVRVGNNLTSIDDMLKLAMPNADIAVNKMNGMVLL 144 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G + +D+ A L++ F+ + V++ L A QV L+V IAEV R Sbjct: 145 TGTIAAPEDAAEAERLTQAFVGKE----------VTVVSRLRTATPLQVNLQVKIAEVSR 194 Query: 208 DILKQIGFQH-----------SITGSSSGPSKSFAADFGG--KFVSEGGDFSVKGVLDRF 254 D+ +IG G + + +F + GG F ++GG +S+ GV Sbjct: 195 DVGHKIGMNWKSQDLTGGKWAGGIGGGTRDAITFNSGGGGTFNFTADGG-YSLGGVARVL 253 Query: 255 SFE--TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + VL E + TLA+P LT++SG++ASF +GG++ Y TVS+ T S+ Y Sbjct: 254 GLDIGAVLDLAESSGLATTLAQPNLTSLSGETASFLAGGEYPY-TVSNGTQGNSIEFKQY 312 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 GV L FTPTVL+ GRI LR++ VS V++ +P+ R R A+TTVEL SG ++AG Sbjct: 313 GVQLAFTPTVLADGRISLRVRPTVSSLDFSVDS-SVPALRSRTAETTVELGSGQAFMIAG 371 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 LL +D +P + +PILG+LF++ F R ETE+ I TP+LVKP+ D+ P D Sbjct: 372 LLNNDTANSISKVPGIGNLPILGSLFKSRNFQRHETELVIVVTPYLVKPMNASDVRLPTD 431 Query: 433 HYSVEDDAKAFFFNR 447 + ++ + F + Sbjct: 432 GFRNANEGQGLFLQQ 446 >gi|83950066|ref|ZP_00958799.1| bacterial type II/III secretion system protein [Roseovarius nubinhibens ISM] gi|83837965|gb|EAP77261.1| bacterial type II/III secretion system protein [Roseovarius nubinhibens ISM] Length = 429 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 139/447 (31%), Positives = 225/447 (50%), Gaps = 48/447 (10%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 +N+ I+++ V ++ V++ + AD S RT+YL GK G+ + L+ G+ + N++ Sbjct: 1 MNRAIVVESDVPFAELSVANASIADFSTLSDRTIYLLGKAPGRTTLTLLDEAGRLITNVE 60 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 I + DI+ + LR+ + + I V +D +VL G+V + QRA++L++ + Sbjct: 61 IHVSADISEFKERLRQILPNEKIEVRTANDGIVLSGVVSSTPRMQRALDLAQRY------ 114 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 + ++V NL++++G+ QV LKV AE++R + K +G I G S+ A Sbjct: 115 ------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKSLGTSLFIDGLSN-------AG 161 Query: 234 FGGKFVSEGGDFSVK------------GVLDRFSF----------ETVLHALERATAIRT 271 GG + G S + G + +F ++ ALE +RT Sbjct: 162 IGGAISTNGIGSSAQTPVGVQPGTGTAGTNNGAAFIGLNAGSAQVGILIQALESKGLVRT 221 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP LTA+SGQ A+F +GG++ V+ GA +V +GV L+F P VL I L Sbjct: 222 LAEPNLTALSGQEANFLAGGEYPIP-VAQEEGAIAVEFKPFGVQLNFVPYVLDDEVINLE 280 Query: 332 IQTEVS--EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I VS +P G + G + +R R TTV L G + +AGLL+DD + +P Sbjct: 281 IAAAVSSIDPSNGYSDGTITIAGFRTRSTSTTVSLRDGDSFAIAGLLQDDFEDTNGQVPW 340 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L +PILGALFR++ + R +TE+ I T LV P L+ P D +A F R Sbjct: 341 LGDLPILGALFRSANYQRSQTELVIIVTAHLVTPTRGEALALPTDRVLPPSEADLFLNGR 400 Query: 448 VNKIYGPKEAS--EVEGQNYKGAIGFI 472 V + + S EV Q++ G+ G++ Sbjct: 401 VARQVRNSKGSVGEVAKQDFNGSYGYV 427 >gi|89068017|ref|ZP_01155434.1| Outer membrane general secretion pathway protein, Secretin [Oceanicola granulosus HTCC2516] gi|89046256|gb|EAR52313.1| Outer membrane general secretion pathway protein, Secretin [Oceanicola granulosus HTCC2516] Length = 482 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 137/459 (29%), Positives = 226/459 (49%), Gaps = 51/459 (11%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + + + +N+ ++++ +V +++P AD+ S RT+Y+ GK G+ + L+G DG+ Sbjct: 39 RALQVPMNRAVVVESDTPFTEVSIANPGIADISTLSDRTLYVLGKEPGRTTLTLLGADGR 98 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + N+++ + DI + L + + +I V ++ +VL G V +I RA+EL++ + Sbjct: 99 LITNVEVQVTPDIDEFKERLAQILPGEHIEVRTAANGIVLSGTVSSIARLDRALELAQRY 158 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + +V NL+ + G QV LKV AE++R + K + + G++ G + Sbjct: 159 ------------APDRVSNLMTVGGVQQVMLKVRFAEMQRSVSKSLSSSLTARGTALGEN 206 Query: 228 KSFAADFG-------------GKFVSEGGD-------FSVKGVLDRFSFETVLHALERAT 267 A G G + + F+ GV +L ALE Sbjct: 207 LGLTAGTGTLTGNGAIGSALNGNVPAANANNGALLLGFNAGGV----EIGMLLEALESRG 262 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +RTLAEP LTA+SGQ A F +GG++ VS G+ S+ +GV L+F P V+ Sbjct: 263 VVRTLAEPNLTALSGQEARFLAGGEYPVP-VSQDGGSISIEYKPFGVELNFIPRVVDGDL 321 Query: 328 IGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 I L +Q VS +P G G + ++R R+ TTVE+ G + +AGLL DD L Sbjct: 322 INLELQASVSSIDPTNGFVQGGFSIDAFRRRETSTTVEMRDGESFAIAGLLSDDFIDLNS 381 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +P + IP+LGALFR++ + R +TE+ I TP LV P L+ P D + F Sbjct: 382 QLPFVGDIPVLGALFRSAEYERNQTELVIIVTPHLVTPTRGEALALPTDRVRPPSERDLF 441 Query: 444 FFNRVNKIYG--------PKE--ASEVEGQNYKGAIGFI 472 F RV G P+ A+EV Q++ G+ G++ Sbjct: 442 LFGRVTAPDGSPIPSSSAPQSGAAAEVARQDFSGSYGYV 480 >gi|224824213|ref|ZP_03697321.1| type II and III secretion system protein [Lutiella nitroferrum 2002] gi|224603632|gb|EEG09807.1| type II and III secretion system protein [Lutiella nitroferrum 2002] Length = 520 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 211/387 (54%), Gaps = 33/387 (8%) Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD--SN 135 DV++ SP +YL GK+VG N+IL+G +G+ L +D+ + D A L+ +L + ++ +N Sbjct: 119 DVILLSPSEIYLLGKSVGSTNIILLGRNGQCTL-VDVAVGADTASLQASLNQLLSPGANN 177 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 ++V SD++VL G V RA+ L+E + +S KV+N++++ Q Sbjct: 178 VKVSAASDSLVLTGTVADSAKLDRAMTLAEAYAGKS-----------KVINMMSVDAPQQ 226 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V L+V IAE+ + +L ++G + + G + S+ + F + G + G+ D + Sbjct: 227 VLLEVKIAEISKKLLDKLGVNIAGILNHGGWTYSWNSLFANDPL---GKALLSGINDSAT 283 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--GATSVTTHD-- 311 + A ++ LAEP L AISGQ SF +GG+ ++T G +++T + Sbjct: 284 RAFQIDAQHDDGLLKVLAEPNLMAISGQEGSFLAGGKIFIPVAQNNTNNGGSTITLEEKE 343 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGD--MPSYRVRKADTTVE 361 +GV L FTPTVL GRI L++ EVSE IGV AG +PS+ R+A TTV+ Sbjct: 344 FGVALRFTPTVLDGGRINLKVAPEVSELNPEGVGISAIGV-AGKSILPSFTTRRAATTVQ 402 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L G + + GLLK+++ P L +IPILGALFR++ F +++E+ TP LVKP Sbjct: 403 LHDGQSFAIGGLLKNNVTTNISAFPFLGEIPILGALFRSTSFQTDKSELVFVVTPRLVKP 462 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRV 448 + D P D+Y + A+ F R+ Sbjct: 463 LP-PDYKLPTDNYIPPNRAELFLGGRM 488 >gi|84516633|ref|ZP_01003992.1| Outer membrane general secretion pathway protein, Secretin [Loktanella vestfoldensis SKA53] gi|84509669|gb|EAQ06127.1| Outer membrane general secretion pathway protein, Secretin [Loktanella vestfoldensis SKA53] Length = 476 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 138/455 (30%), Positives = 225/455 (49%), Gaps = 51/455 (11%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + + +N+ ++++ V ++ +++P AD+ S RT+Y+ GK G+ + L+ DG+ Sbjct: 40 NALDVPMNRAVVVESDVPFTELSIANPGIADISSLSDRTIYVLGKEPGRTTLTLLSADGR 99 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + N+++ + D+A + L + + NI V +D +VL G V + RA++L++ + Sbjct: 100 LITNVEVHVSPDMAEFKERLTQILPGENIEVRTANDGIVLSGTVSSTARLDRALDLAQRY 159 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL----------------- 210 + +V NL+++ G QV LKV AE++R + Sbjct: 160 ------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVSKALSSSLSLNGTSLQNG 207 Query: 211 KQIGFQHSITGSSSGPSKSF------AADFGGKFVSEGGDFSVK-GVLDRFSFETVLHAL 263 + I + T +G + + A D G F+ G V+ GVL L AL Sbjct: 208 RNIRGGSNTTVGQAGITNTLNNIVPTANDNNGAFLFGFGAGGVEVGVL--------LEAL 259 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E +R+LAEP LTA+SGQ A+F +GG++ VSS GA SV +GV L+FTP V+ Sbjct: 260 ESRGVVRSLAEPNLTALSGQQATFLAGGEYPVP-VSSEDGAISVEYKPFGVELNFTPRVV 318 Query: 324 SPGRIGLRIQTEVS--EPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 I L + VS +P N ++ ++ R+ TTVE+ G + +AGLL DD Sbjct: 319 DGDVINLELLAAVSAIDPSNSFSANGFEISAFSRRETSTTVEMRDGESFAIAGLLSDDFT 378 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 L +P + +PILGALFR++ + R +TE+ I TP LV P L+ P D + Sbjct: 379 DLSGQVPWIGDVPILGALFRSAEYARRQTELVIIVTPHLVSPTRGTALALPTDRVRPPSE 438 Query: 440 AKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFI 472 F F RV P A EV Q++ G+ G++ Sbjct: 439 QDLFLFGRVTAASAPTRGGAGEVARQDFMGSYGYV 473 >gi|294676059|ref|YP_003576674.1| type II and III secretion system protein [Rhodobacter capsulatus SB 1003] gi|294474879|gb|ADE84267.1| type II and III secretion system protein [Rhodobacter capsulatus SB 1003] Length = 469 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 221/448 (49%), Gaps = 41/448 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ +N+ ++++ ++ +++P ADV S +T+Y+ GK G+ + ++G DG + Sbjct: 40 LAVPMNRAVVVESDQPFSELSIANPGIADVTTLSDKTIYVLGKVPGRTTMTILGADGTLL 99 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N+++ + DIA + L++ + NI V +D +VL G V + RA++L+ + Sbjct: 100 SNVEVQVTPDIAEFKERLKQILPGENIEVRTANDGIVLSGTVSSSAKLDRALDLARRY-- 157 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ----------IGFQHSI 219 + ++V NL+N+ G QV LKV AE++R + K +G ++ Sbjct: 158 ----------AGERVSNLMNVGGTQQVMLKVRFAEMQRSVSKNLASSLAMRGTVGGGNAQ 207 Query: 220 TGSSSGPSKSFAADFGGKFVSEG---------GDFSVKGVLDRFSFETVLHALERATAIR 270 TG +G A D G +G G + + F +L ALE +R Sbjct: 208 TGVITGTGNFTATDAVGNAFDKGTMPISASTQGALGLGFTVGNMEFGVLLEALESKGMVR 267 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 TLAEP LTA+SGQ A F +GG++ V ++ +GV + F P V+ I L Sbjct: 268 TLAEPNLTALSGQQAKFLAGGEYPIPVVDDD--GITIEYKPFGVEMSFIPRVVDGDLINL 325 Query: 331 RIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I VS V N + +++ R+ TTVE+ G + +AGLL+DD L IP Sbjct: 326 EIAAAVSAIDTSVTMTNNGTTVNAFKRRETSTTVEMRDGESFAIAGLLQDDFNDLNTQIP 385 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 L +P+LG+LFR++ F R+++E+ I TP LV P L+ P D + +++ F Sbjct: 386 WLGDVPVLGSLFRSTAFERKQSELVIIITPHLVTPTHGEALALPTDRIRLPSESELFLRG 445 Query: 447 RVNKIYGPKEASEVEGQNYKGAIGFIYK 474 + A EV Q++ G+ G++ + Sbjct: 446 KTEG----GAAGEVARQDFSGSYGYVME 469 >gi|330953268|gb|EGH53528.1| type III secretion component [Pseudomonas syringae Cit 7] Length = 438 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 137/412 (33%), Positives = 210/412 (50%), Gaps = 28/412 (6%) Query: 44 IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 I KG K ++IG +V+ PVD V+V++P AD+ V SP +Y+FGK GQ ++ Sbjct: 29 IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKTAGQTSL 86 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I + +G++ L + + A + L+ S R+ V+ G V QD Sbjct: 87 IALDSEGRETATLSLAVSSGTAAVSRPLKALHPQSQARINASGSRVIASGAV---QDVGE 143 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A +L+ LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 144 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNA 196 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFETVLHALERATAIRTLAE 274 ++ + SF GG ++ S + + +L AL+ + LAE Sbjct: 197 LFNNG--TFSFGLLTGGSLAADAASGASNVISAGLTSGNVNIDAMLEALQNNGVLEVLAE 254 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P +TA++GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ Sbjct: 255 PNITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRP 313 Query: 335 EVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVS + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L Sbjct: 314 EVSSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGD 373 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +PILG+LFR+ RF R ETE+ I TP+LV+PV R + P D A A Sbjct: 374 MPILGSLFRSKRFQRNETELVILITPYLVEPVKERVAATPLDKQRAASTAAA 425 >gi|163738370|ref|ZP_02145785.1| bacterial type II/III secretion system protein [Phaeobacter gallaeciensis BS107] gi|161388291|gb|EDQ12645.1| bacterial type II/III secretion system protein [Phaeobacter gallaeciensis BS107] Length = 484 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 133/459 (28%), Positives = 234/459 (50%), Gaps = 53/459 (11%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V+ G + + +N+ ++++ V ++ +++P+ AD+ S RT+Y+ GK+ G + L Sbjct: 49 VKKGTAANLEVPMNRAVVVESDVPFSELSIANPSIADISSLSDRTIYVLGKSPGLTTLTL 108 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + G+ + N+D+ + D++ + LR+ + I V +D +VL G+V + QRA+ Sbjct: 109 LDASGRLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGIVLSGVVSSSARLQRAL 168 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF------ 215 +L+E + + ++V NL+++ G QV LKV AE++R + K + Sbjct: 169 DLAERY------------APERVSNLMSVGGVQQVMLKVRFAEMQRTVSKSLSASLGVKG 216 Query: 216 ---------------QHSITGSSSG--PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 Q ++T S SG P+ + D G FV F F Sbjct: 217 GNSVGVNGGTSTLNTQGALTNSLSGNIPAGN---DNTGAFV-----FGFNA--GAFQVNL 266 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L ALE+ +RTLAEP L+A+SGQ A F +GG++ V+ G ++ +G+ L+F Sbjct: 267 LLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDGIITIEFKPFGIELNF 325 Query: 319 TPTVLSPGRIGLRIQTEVS--EPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 P V+ I L ++ VS +P I +N + ++ R+ TTVEL G + +AGL+ Sbjct: 326 VPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRETSTTVELRDGESFAIAGLI 385 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +D+ + +P + +P+LG+LFR++ + R +TE+ I + LV P LS P D Sbjct: 386 RDEFRDSSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLVTPTRGEALSLPTDRI 445 Query: 435 SVEDDAKAFFFNRVNK-IYGPKEASEVEGQNYKGAIGFI 472 +++ F RV K GP ASEV Q++ G+ G++ Sbjct: 446 RPPSESELFLMGRVAKGQKGP--ASEVAKQDFNGSYGYV 482 >gi|163742213|ref|ZP_02149601.1| bacterial type II/III secretion system protein [Phaeobacter gallaeciensis 2.10] gi|161384543|gb|EDQ08924.1| bacterial type II/III secretion system protein [Phaeobacter gallaeciensis 2.10] Length = 484 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 132/457 (28%), Positives = 234/457 (51%), Gaps = 49/457 (10%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V+ G + + +N+ ++++ V ++ +++P+ AD+ S RT+Y+ GK+ G + L Sbjct: 49 VKKGTAANLEVPMNRAVVVESDVPFSELSIANPSIADISSLSDRTIYVLGKSPGLTTLTL 108 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + G+ + N+D+ + D++ + LR+ + I V +D +VL G+V + QRA+ Sbjct: 109 LDASGRLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGIVLSGVVSSSARLQRAL 168 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF------ 215 +L+E + + ++V NL+++ G QV LKV AE++R + K + Sbjct: 169 DLAERY------------APERVSNLMSVGGVQQVMLKVRFAEMQRTVSKSLSASLGVKG 216 Query: 216 ---------------QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 Q ++T S SG + A D G FV F F +L Sbjct: 217 GNSVGVNGGTSTLNTQGALTNSLSGNIPA-ANDNTGAFV-----FGFNA--GAFQVNLLL 268 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ALE+ +RTLAEP L+A+SGQ A F +GG++ V+ G ++ +G+ L+F P Sbjct: 269 EALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDGVITIEFKPFGIELNFIP 327 Query: 321 TVLSPGRIGLRIQTEVS--EPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 V+ I L ++ VS +P I +N + ++ R++ TTVE+ G + +AGL++D Sbjct: 328 RVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRESVTTVEMRDGESFAIAGLIRD 387 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + + +P + +P+LG+LFR++ + R +TE+ I + LV P LS P D Sbjct: 388 EFRDNSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLVTPTRGEALSLPTDRIRP 447 Query: 437 EDDAKAFFFNRVNK-IYGPKEASEVEGQNYKGAIGFI 472 +++ F RV K GP ASEV Q++ G+ G++ Sbjct: 448 PSESELFLMGRVAKGQKGP--ASEVAKQDFNGSYGYV 482 >gi|126729098|ref|ZP_01744912.1| bacterial type II/III secretion system protein [Sagittula stellata E-37] gi|126710088|gb|EBA09140.1| bacterial type II/III secretion system protein [Sagittula stellata E-37] Length = 473 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 143/481 (29%), Positives = 242/481 (50%), Gaps = 58/481 (12%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82 +A + P A++ I V G +S+ +N+ ++++ ++ +++P+ AD+ Sbjct: 18 IATMSPPAHADS----IRVVRTGTESVLSVPMNRAVVVESDTPFAELSIANPSIADISSL 73 Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142 S RT+Y+ GK G + ++ G+ + N+D+ + D+ + L + + + I V + Sbjct: 74 SDRTIYVLGKQPGTTTLTILDPQGQLITNVDVRVAADVTEFKERLTQILPEERIEVRTAN 133 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 D +VL G V +I +RA++L++ + + +V NL+ + G QV LKV Sbjct: 134 DGIVLSGTVSSIARMERALDLAQRY------------APDRVSNLMVVGGIQQVMLKVRF 181 Query: 203 AEVRRDILKQIGFQHSITGSSSG--------------PSKSFAAD--FGGKFVSEGG--- 243 AE+RR + K + + TG S+G + AD F + +EG Sbjct: 182 AEMRRSVSKALRASLA-TGGSTGDLGVELGTGNAGTLAERDLVADKLFPRRLGTEGAVLF 240 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F+ G +L ALE +RTLAEP LTA+SGQ ASF +GG++ V ++ G Sbjct: 241 GFNAGG----LEVGILLEALESKGMVRTLAEPNLTALSGQEASFLAGGEY---PVPTAQG 293 Query: 304 ATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD--MPSYRVRKAD 357 SVT +GV L F P V+ I L ++ VS + G+ D + + R+A Sbjct: 294 DNSVTVEFKPFGVELAFVPRVIDGDLINLELEAAVSSVDSANGITFQDVTIAGFARREAK 353 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTVEL G + +AGLL+++ L +P + +PILGALFR++ + RE++E+ I TP Sbjct: 354 TTVELRDGESFAIAGLLQENFADLNGQVPWIGDVPILGALFRSTEYQREQSELVIIVTPH 413 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG----PKE--ASEVEGQNYKGAIGF 471 LV P L+ P D ++ + + F N KI G P+ A+EV Q++ G+ G+ Sbjct: 414 LVTPTRGEALALPTDRVTLPSE-RQLFLN--GKIDGNGRRPRSGAAAEVANQDFNGSYGY 470 Query: 472 I 472 + Sbjct: 471 V 471 >gi|259417373|ref|ZP_05741292.1| type II and III secretion system protein [Silicibacter sp. TrichCH4B] gi|259346279|gb|EEW58093.1| type II and III secretion system protein [Silicibacter sp. TrichCH4B] Length = 442 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 134/455 (29%), Positives = 227/455 (49%), Gaps = 40/455 (8%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 IS ++ G + + +N+ ++++ V ++ +++P AD+ S RT+Y+ GK+ G Sbjct: 5 ISVLKKGTNAVLDVPMNRAVVVEADVPFAELSIANPGIADISSLSDRTIYVLGKSPGMTT 64 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 + L+ G + N+D+ + D++ + L++ + + I V +D +VL G V + Q Q Sbjct: 65 LTLLDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSGTVSSAQRLQ 124 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 RA++L+E + + +V NL+ + G QV LKV AE+ R + K +G Sbjct: 125 RALDLAERY------------APDRVSNLMTVGGIQQVMLKVRFAEMERSVSKSLGGSML 172 Query: 219 ITGSSSG--PSKSFA--ADFGGKFVSEGGDFSVKGVLDRFS------------FETVLHA 262 I GSS G + +F + GG F G D V D F +L A Sbjct: 173 I-GSSDGNVSTGTFLNRPEGGGVF---GTDSPVNLKADTLGAAIFGFDIGAVQFNVLLEA 228 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE+ +RTLAEP L+A+SGQ ASF +GG++ V+ G +V +G+ L+F P V Sbjct: 229 LEQKGLVRTLAEPNLSALSGQEASFLAGGEYPVP-VAQEEGVVTVEFKPFGIELNFIPRV 287 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-----RKADTTVELPSGGTIVLAGLLKDD 377 + I L ++ VS + NA + + R+ TTVEL G + +AGL++D+ Sbjct: 288 VDGDLINLELKAAVS-AIDTTNAATFDGFSINAFSRRETATTVELRDGESFAIAGLIEDE 346 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +P L +P+LGALFR++ + R ++E+ I + LV P L+ P D Sbjct: 347 FRDGAAQVPWLGDVPVLGALFRSADYERNQSELVIIVSAHLVTPTRGEALALPTDRIRPP 406 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 + F F R + A EV Q++ G+ G++ Sbjct: 407 SEKNLFLFGRTERAQS-GAAGEVANQDFNGSYGYL 440 >gi|86137993|ref|ZP_01056569.1| bacterial type II/III secretion system protein [Roseobacter sp. MED193] gi|85825585|gb|EAQ45784.1| bacterial type II/III secretion system protein [Roseobacter sp. MED193] Length = 459 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 130/448 (29%), Positives = 229/448 (51%), Gaps = 34/448 (7%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V+ G + + +N+ ++++ ++ +++P AD+ S RT+Y+ GK+ G + L Sbjct: 27 VKRGTSVTLDVPMNRAVVVESDDPFAELSIANPNIADISSLSDRTIYVLGKSPGLTTLTL 86 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + GK + N+++ + D++ + LR+ + I V +D +VL G V + QRA+ Sbjct: 87 LDASGKLITNVNVRVAADVSEFKERLRQILPGEQIEVRTANDGIVLSGNVSSAARLQRAL 146 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-- 219 +L+E + + ++V NL+++ G QV LKV AE++R + K + ++ Sbjct: 147 DLAERY------------APERVSNLMSVGGVQQVMLKVRFAEMQRSVSKALHSSVALGS 194 Query: 220 -TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---------TVLHALERATAI 269 G++SG + + FG + G+ +F+ +L ALE+ + Sbjct: 195 QNGNASGETGQWL--FGNNGLGNTPIEVKDGIAGALAFQFGVGSLQVGLLLEALEQKGVV 252 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 RTLAEP L+A+SGQ A F +GG++ VS G +V +G+ L+F P V+ I Sbjct: 253 RTLAEPNLSALSGQEAKFLAGGEYPIP-VSQDGGTVTVEFKPFGIELNFIPRVVDGDVIN 311 Query: 330 LRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L ++ VS + N + ++ R+ TTVEL G + +AGL++DD I Sbjct: 312 LELKAAVSAIDTSNTVTANGLSIAAFSRRETSTTVELRDGESFAVAGLVQDDFLDNTSQI 371 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P + +P+LGALFR++ + RE+TE+ I + LV P LS P D +++ F Sbjct: 372 PWIGDVPVLGALFRSADYQREQTELVIIVSAHLVTPTRGEALSLPTDRIKPPSESELFLL 431 Query: 446 NR-VNKIYGPKEASEVEGQNYKGAIGFI 472 R V+ GP ASEV Q++ G+ G++ Sbjct: 432 GRTVHSQKGP--ASEVAKQDFNGSYGYV 457 >gi|85859139|ref|YP_461341.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB] gi|85722230|gb|ABC77173.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB] Length = 503 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 129/435 (29%), Positives = 221/435 (50%), Gaps = 39/435 (8%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V + +K+++ + K I++ P +++ V ++ P AD++ SPR +YL GK G N+ L Sbjct: 39 VNTSRPQKLTLTVGKSTIVECPQNLKRVSIAAPDYADILTLSPRQIYLTGKMAGNTNLTL 98 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160 D M +D+ + D+ L+ + + D +IRV D + L G V + + + Sbjct: 99 WRSDNSVMSVIDVEVLPDVVGLKEKIHSMMPDEKDIRVTATPDAITLSGTVSSAANMNQV 158 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217 + L+ ++ + G+++ V N L + G QV L+V ++E+ R ++K++G Sbjct: 159 MSLANSY-APKGKDKTGG-----VNNFLEVGGVHQVMLEVRVSEMSRSLIKKLGINWNYL 212 Query: 218 SITGSSSG-------------------PSKSFAADFG----GKFVSEGGDFSVKGVLDRF 254 S G++ G P +A G G VS + + Sbjct: 213 SEGGNTFGMSMLDNLTYTVSPSDANIQPMTHLSASEGAVSVGTLVSSSVGLAFRFFGGGA 272 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 ++ + A++ ++ LAEPTL +SG++ASF +GG+ + ++ +GV Sbjct: 273 TWTLFIDAMKDQGLLKVLAEPTLLTLSGKTASFLAGGE--FPIPVPQEENITIEYKPFGV 330 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L+FTPTVLS +I +++ EVS+ + V +PS R+ TTVEL G + + Sbjct: 331 GLNFTPTVLSNKKISMQVSPEVSDLDYTNAVAVGGYAVPSITTRRVATTVELADGQSFAI 390 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLLKDDI+Q+ +PLL IP+LG+LFR+S+F + ETE+ I TP LVKP+ M + P Sbjct: 391 AGLLKDDIRQIVRKVPLLGDIPVLGSLFRSSQFRKNETELVIIVTPRLVKPLDMTKQTLP 450 Query: 431 DDHYSVEDDAKAFFF 445 D Y +D + + Sbjct: 451 TDQYVEPNDFEFYLL 465 >gi|237800794|ref|ZP_04589255.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023652|gb|EGI03709.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] Length = 432 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 135/412 (32%), Positives = 211/412 (51%), Gaps = 28/412 (6%) Query: 44 IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 I KG + ++IG +V+ PVD V+V++P AD+ V SP +Y+FGK GQ ++ Sbjct: 23 IAKGAEGTIDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKTAGQTSL 80 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I + +G++ L + + A + L+ S R+ + V+ G ++QD Sbjct: 81 IALDSEGRETAALSLAVSSGTAAVTRPLKALHPQSRARISASGNRVIASG---SVQDVGE 137 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A +L+ LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 138 ATDLN-ALLSSEGQN------FQSSVNSATYAGAAQVNIRVRFAEVSRSELLRYGVNWNA 190 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFETVLHALERATAIRTLAE 274 ++ + SF GG ++ S + + +L AL+ + LAE Sbjct: 191 LFNNG--TFSFGLLTGGSLAADAASGASNVISAGLTSGNVNIDAMLEALQSNGVLEVLAE 248 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P +TA++GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ Sbjct: 249 PNITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRP 307 Query: 335 EVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVS + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L Sbjct: 308 EVSSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGD 367 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +PILG LFR+ RF R ETE+ I TP+LV+PV R + P D A A Sbjct: 368 MPILGNLFRSKRFQRNETELVILITPYLVEPVKERVAATPLDKQRATSTASA 419 >gi|325525578|gb|EGD03368.1| flp type pilus assembly protein [Burkholderia sp. TJI49] Length = 545 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 132/412 (32%), Positives = 220/412 (53%), Gaps = 28/412 (6%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ G G Sbjct: 99 VSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQGRSGACR 158 Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D L+ +L++ + + +I V + T+VL G V Q +Q+AV ++ + Sbjct: 159 V-IDVAVGADAGGLQTSLQQLMPNERDIHVSTAAGTIVLAGSVSNSQAAQQAVAIARAYG 217 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSG 225 +G V+N+L++ QV L+V +AEV + ++ Q+G +I G S SG Sbjct: 218 DSAGSGDAGGKPGSGVLNMLSVTSPQQVMLEVKVAEVSKTLINQLGSAFNIQGGFGSWSG 277 Query: 226 P--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S A G VS+ +R F+ A ++ LAEP L ISGQ Sbjct: 278 ALVSNLLAGVASGIAVSKS---------NRRPFQIAADAQNTDNLVKILAEPNLVTISGQ 328 Query: 284 SASFTSGGQHLYKTVSSSTG-ATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSE-P 339 A+F +GG+ SS G AT++T + +GV L FTPTVL+ GRI L++ EVSE Sbjct: 329 EATFLAGGKIFIPVPQSSGGNATTITLQEEEFGVALKFTPTVLANGRISLKVAPEVSELS 388 Query: 340 VIGV--------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 GV A +P R+A TTV++ G + + GL+KD++ + IP + ++ Sbjct: 389 STGVTLSATNVSGASILPLITTRRASTTVQMNDGESFAIGGLIKDNVTGALKAIPGVGEV 448 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 P+LGALFR++ F ++ TE+ TP LVKP+ + D+ P D +S ++A + Sbjct: 449 PVLGALFRSTSFQQDRTELIFLITPHLVKPMQIADVPLPTDSFSKPNEADVY 500 >gi|254463467|ref|ZP_05076883.1| bacterial type II/III secretion system protein [Rhodobacterales bacterium HTCC2083] gi|206680056|gb|EDZ44543.1| bacterial type II/III secretion system protein [Rhodobacteraceae bacterium HTCC2083] Length = 474 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 145/488 (29%), Positives = 242/488 (49%), Gaps = 46/488 (9%) Query: 10 TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69 T+ + FL + A + P A+A + I V G + I +N+ ++++ V ++ Sbjct: 6 TLRAAFLGCAVLFTASVAP---AHADTLRI--VRSGSSSTLPIPMNRAVVVESDVPFAEL 60 Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 +++P+ AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ + LR+ Sbjct: 61 SIANPSIADISTLSDRTVYVLGKSPGLTTLTLLDDAGRLITNVDVRVSADVSEFKERLRQ 120 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + I V +D +VL G V + RA++L++ + + ++V NLL+ Sbjct: 121 ILPGEKIEVRTANDGIVLSGTVSSAGKVDRAMDLAQRY------------APERVTNLLS 168 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQH-----------SITGSSSGPSKSFAADFGGKF 238 ++G QV LKV AE++R + K + S+ G ++ + A+ Sbjct: 169 VSGVQQVMLKVRFAEMQRSVSKSLSSSLALGGSALGGNLSVRGGTNTLASGAASSAAIAG 228 Query: 239 VSEGGDFSVKGVLDRFSFET-------VLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + + + L F F +L ALE +RTLAEP LTA+SGQ A F +GG Sbjct: 229 TAPANNANNGATL--FGFNAGGLEVGILLEALESKGMVRTLAEPNLTALSGQEAKFLAGG 286 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGV--NAGD 347 ++ SSS + +GV L F P VL I L + EVS + G+ + Sbjct: 287 EYPIPVQSSS--GVQIQFKPFGVQLAFIPRVLDDKVINLELNAEVSSLDAANGIVSDGFA 344 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + +VR+ TTVE+ G + +AGLL+DD L +P L IP+LGALFR++ + RE+ Sbjct: 345 ISGLKVRRTSTTVEMRDGESFAIAGLLQDDFTDLSGQVPWLGDIPVLGALFRSADYKREQ 404 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN-KIYGPKE--ASEVEGQN 464 +E+ I TP LV P L+ P D S + F F RV PK+ A+EV Q+ Sbjct: 405 SELVIIVTPHLVTPTRGEALALPTDRISPPTEKDLFLFGRVTGDSRRPKKGAAAEVARQD 464 Query: 465 YKGAIGFI 472 + G+ G++ Sbjct: 465 FTGSYGYV 472 >gi|186474103|ref|YP_001861445.1| type II and III secretion system protein [Burkholderia phymatum STM815] gi|184196435|gb|ACC74399.1| type II and III secretion system protein [Burkholderia phymatum STM815] Length = 700 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 138/454 (30%), Positives = 230/454 (50%), Gaps = 53/454 (11%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + ++I + K ++ V V+ V +P+ ++ SP+T+YL G +VG N+I+ G G Sbjct: 116 QTVTIPIGKSTMVNVRESVKTRTVGNPSIVQAMLVSPQTLYLLGTDVGTTNMIVQGRSGS 175 Query: 108 QMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +D+ + D L+ TL + + S ++V+ +DT+VL G V ++R VEL+ Sbjct: 176 CTV-IDVAVGADPGGLQQTLAVLMPEESGVQVKAAADTLVLTGTVSDSVKAERIVELARA 234 Query: 167 FLSQSGR--------------------------NQYANSSSKKVMNLLNIAGEDQVTLKV 200 ++++ N ++++++N++++A QV L+V Sbjct: 235 YVARQAAPVPVAAPANAGGAQGGAMIPAVLKPAGASGNGNNERIVNMMHVAAPQQVMLEV 294 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFVSEGGDFSVKGVLDRFSFET 258 +AEV + ++ Q+G +I G + S ADF GG G K +F Sbjct: 295 KVAEVSKTLIDQLGMAANIQGGTGSWSFGLLADFLSGGM----GALLGSKANNKPLNF-- 348 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----THDYGV 314 + A + ++ LAEPTL AISGQ ASF +GG+ ++ V S GA T +GV Sbjct: 349 AIDAQKTDQLVKVLAEPTLMAISGQEASFLAGGR-VFIPVPQSNGAAGSTIILQEETFGV 407 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE--PV-IGVNAGD------MPSYRVRKADTTVELPSG 365 L FTPTVL GRI L++ EVSE P + V AG +P R+A TT+++ G Sbjct: 408 GLTFTPTVLDNGRINLKVSPEVSELSPTGVAVTAGTVSTTAVLPLITTRRASTTLQVYDG 467 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + + GL+K ++ +G+P L ++P+LGALFR++ F ++TE+ TP L KP+ + Sbjct: 468 QSFAIGGLMKSNVTGTLKGLPGLGEVPVLGALFRSTNFQEDKTELVFVVTPRLAKPLP-Q 526 Query: 426 DLSRPDDHYSVEDDAKAFFFNRV--NKIYGPKEA 457 + P DH+ +A FF + K P EA Sbjct: 527 NYPLPTDHFGKVTEAGVFFTGNMEGKKPQAPAEA 560 >gi|167589424|ref|ZP_02381812.1| type II and III secretion system protein [Burkholderia ubonensis Bu] Length = 460 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 136/448 (30%), Positives = 222/448 (49%), Gaps = 41/448 (9%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +++ K +L +P + V+DP+ AD+ V SPRT+++FGK G +I +G + Sbjct: 33 GAPLTLAAGKGDLLSLPEPAATMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANH 92 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +L ++++ D L+ L ++V ++++ G V + D+ ++ Sbjct: 93 RPILRRTVIVQADTPSLQRVLDSRFPQWQLKVSGAPGSLMVSGKVPSGADADAVMQSLAP 152 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +L +K++N L ++ QV L+V + EV R+I +Q+G S G S Sbjct: 153 YLQDK----------EKLVNRLTLSRPIQVNLRVRVTEVSRNITQQLGINWSGLGGSG-- 200 Query: 227 SKSFAADFGGKFV----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAE 274 F G+ + S G FSV G R+S + VL AL++ I LAE Sbjct: 201 -NFIGGLFNGRTLFDPTTSLFNLSPTGAFSVLGGFRAGRWSIDVVLDALDQEGLITMLAE 259 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSS--STGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 P LTA+SG++ASF +GG+ S +TGA +V +GV L FTPTVL+ RI L++ Sbjct: 260 PNLTAMSGETASFLAGGEIPIPVAQSGTTTGAITVEFKPFGVSLDFTPTVLAENRISLKV 319 Query: 333 QTEVSE--PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + EVSE P V G +P+ VR+ +TTVEL SG + + GLL+ + IP L Sbjct: 320 RPEVSEIDPTNSVTTGGVKVPALSVRRVETTVELSSGQSFAIGGLLQSQTSDVVSQIPGL 379 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR- 447 ++P+LG LF + F +TE+ + TP++V+P L + D + F R Sbjct: 380 GRLPVLGRLFSSKNFQDNKTEVVVIVTPYIVQPAGPGQLEQAIDTVARPSSDLEFAVQRN 439 Query: 448 --VNKIYGPKEASEVEGQNYKGAIGFIY 473 ++ + G + GA GF+Y Sbjct: 440 LGLDLLSG-------DTPRLVGAAGFVY 460 >gi|218670938|ref|ZP_03520609.1| putative pilus assembly protein [Rhizobium etli GR56] Length = 186 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 98/183 (53%), Positives = 129/183 (70%), Gaps = 5/183 (2%) Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 Q LY T + S G +V +YG+ L F P VLS GRI L I+T VSEPV G +G+ +Y Sbjct: 9 QQLYST-TDSDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAG--SGNA-TY 64 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+ETE+ Sbjct: 65 QRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELV 124 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471 I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G+IGF Sbjct: 125 IIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGF 183 Query: 472 IYK 474 IYK Sbjct: 184 IYK 186 >gi|103486617|ref|YP_616178.1| type II and III secretion system protein [Sphingopyxis alaskensis RB2256] gi|98976694|gb|ABF52845.1| type II and III secretion system protein [Sphingopyxis alaskensis RB2256] Length = 493 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 140/445 (31%), Positives = 224/445 (50%), Gaps = 49/445 (11%) Query: 32 ANAAVINIS---DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88 A AV N S D+ +G+G+ IS+ P + DV V+D ADV V S R +Y Sbjct: 34 AAQAVQNASSSIDLSVGRGRLISL----------PAAMSDVFVADDKVADVQVRSSRQLY 83 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 +F K G+ ++ G+ + + + +I ++ L + +++I ++ V+L Sbjct: 84 VFAKAPGETSIYATDASGRVVFSTVARVGNNIETIDQMLSLAMPEASIAANTMNGFVLLT 143 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G VR+ D+ A L + F+ KV++ L A QV L+V IAEV R Sbjct: 144 GTVRSPDDAAEAERLVQAFVGDQ----------TKVLSRLRTATPLQVNLQVRIAEVNRS 193 Query: 209 ILKQIGFQHSITGSSSGPSKS--FAADFGGK----------------FVSEGGDFSVKGV 250 ++K++ + +T + GP + FGG+ + G S+ G Sbjct: 194 LVKELS-GNLLTRDTDGPLGNGFLGGVFGGRQAGTITTDANGNTIYSITTPPGTRSLAGA 252 Query: 251 LDRFSFETV--LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 F + + L ER+ + TLA+P LTAISG++A F +GG+ + G T++ Sbjct: 253 GRLFGLDLIASLDIGERSGLVATLAQPNLTAISGETADFLAGGEFPVPIPGNFAG-TTIE 311 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPS 364 YGV L +TPTVLS GRI LR++ EVSE I + +P+ +R+A+TTVEL S Sbjct: 312 YRKYGVSLAYTPTVLSNGRISLRVRPEVSELSTEGAIEMQGFQIPALTIRRAETTVELGS 371 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G + ++AGLL + + +P L +P+LG LF++ F R ETE+ I TP+LV+PV+ Sbjct: 372 GESFMIAGLLNNRSIGAIDKMPGLGDVPLLGTLFKSDSFRRGETELVIVVTPYLVEPVSA 431 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVN 449 D+ P D + DD + N+ + Sbjct: 432 NDIKLPTDAFRDADDLQRLLLNQTS 456 >gi|78060314|ref|YP_366889.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383] gi|77964864|gb|ABB06245.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383] Length = 652 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/407 (30%), Positives = 212/407 (52%), Gaps = 18/407 (4%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ G G Sbjct: 100 VSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQGRSGACR 159 Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D L+ +L + + + +I V + T+VL G V + +Q+A++++ + Sbjct: 160 V-IDVAVGADAGGLQASLMQLMPNERDIHVSTAAGTIVLAGTVSSSMAAQQAMQIARAYG 218 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 +G + V+N+LN+ QV L+V +AEV + ++ Q+G +I G S Sbjct: 219 DSAGDPAGGGKAGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSALNIQGGFGSWSG 278 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + ++ V+ G FS + F A ++ LAEP L ISGQ A+F Sbjct: 279 ALVSNLLAG-VATGIAFSKA---NNKPFNLAADAQNTDNLVKILAEPNLVTISGQEATFL 334 Query: 289 SGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE------P 339 +GG+ SS TS T ++GV L FTPTVLS GRI L++ EVSE Sbjct: 335 AGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLSNGRISLKVAPEVSELSQTGVT 394 Query: 340 VIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + N G +P R+A TTV++ G T + GL+KD+ + +P + +IP+LGA Sbjct: 395 LSATNIGGTSILPLITTRRASTTVQMGDGETFAIGGLIKDNGTGALKALPGVGEIPVLGA 454 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 L R++ F ++ TE+ TP LVKP+ D+ P D +S ++ + Sbjct: 455 LLRSTSFQQDRTELIFVITPHLVKPLQTADVPLPTDSFSKPNEVDVY 501 >gi|254487886|ref|ZP_05101091.1| bacterial type II/III secretion system protein [Roseobacter sp. GAI101] gi|214044755|gb|EEB85393.1| bacterial type II/III secretion system protein [Roseobacter sp. GAI101] Length = 486 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 132/458 (28%), Positives = 228/458 (49%), Gaps = 44/458 (9%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V G + + + +N+ ++++ + ++ +++P AD+ S RT+Y+ GK+ G + L Sbjct: 44 VNRGTNRALEVPMNRAVVVESDIPFAELSIANPGIADISSLSDRTIYVLGKSPGLTTLTL 103 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + G+ + N+D+ + DI+ + LR+ + I V +D +VL G+V + Q QRA+ Sbjct: 104 LDAAGQLITNVDVRVASDISEFKERLRQILPGEKIEVRTANDGIVLSGIVSSTQGLQRAL 163 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +L+E + + ++V NL+++ G QV LKV AE++R + K + ++ G Sbjct: 164 DLAERY------------APERVSNLMSVGGIQQVMLKVRFAEMQRSVSKSLSASLALNG 211 Query: 222 ------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET-------VLHA 262 +++ S + A G + + VL F F +L A Sbjct: 212 LLGSDLAINGGTNTTNGSTAIANSLNGSTPTTNSN--AGAVL--FGFNAGSTQVGLLLEA 267 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE+ A+R LAEP L A+SGQ A+F +GG++ VS S SV +GV + F P V Sbjct: 268 LEQKGAVRFLAEPNLVALSGQEATFLAGGEYPVP-VSQSGDRISVEYKPFGVEMSFIPRV 326 Query: 323 LSPGRIGLRIQTEVS--EPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + I L ++ VS +P V+ G D+ ++ R+ TTVE+ G + +AGLL DD Sbjct: 327 VDKNLINLELKAAVSAIDPSNSVSLGNGFDISAFTRRETSTTVEMRDGESFAIAGLLTDD 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +P + +P+LGALFR++ + R +TE+ I T LV P L+ P D Sbjct: 387 FTDTSRQLPWIGDVPVLGALFRSANYQRSQTELVIIITAHLVTPTRGDALALPTDRIKPP 446 Query: 438 DDAKAFFFNRVN---KIYGPKEASEVEGQNYKGAIGFI 472 + + F R + K A EV Q++ G+ G++ Sbjct: 447 TENELFLSGRTSSGGKAPTRGAAGEVAKQDFSGSYGYV 484 >gi|254466441|ref|ZP_05079852.1| bacterial type II/III secretion system protein [Rhodobacterales bacterium Y4I] gi|206687349|gb|EDZ47831.1| bacterial type II/III secretion system protein [Rhodobacterales bacterium Y4I] Length = 468 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/453 (27%), Positives = 231/453 (50%), Gaps = 41/453 (9%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V+ G + + +N+ ++++ + ++ +++P+ AD+ S RT+Y+ GK+ G + L Sbjct: 33 VKKGTAATLDVPMNRAVVVESEIPFAELSIANPSIADISSLSDRTIYVLGKSPGLTTLTL 92 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + G+ + N+D+ + D+ + LR+ + + I V +D +VL G V + QRA+ Sbjct: 93 LDGSGRLITNVDVRVAADVTEFKQRLRQILPNEKIEVRTANDGIVLSGTVSSSARLQRAL 152 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK----QIGF-- 215 +L+E + + ++V NL+++ G QV LKV AE++R + K +GF Sbjct: 153 DLAERY------------APERVSNLMSVGGVQQVMLKVRFAEMQRSVSKSLSASLGFNG 200 Query: 216 --------QHSITGSSSGPSKSFAADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALE 264 ++ +S + S A + + G F+ V +L ALE Sbjct: 201 GTGNGRTGGYNTLNTSGALANSLAGNIPAANENTGAFLFGFNAGSV----QVSLLLEALE 256 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + +RTLAEP L+A+SGQ A F +GG++ V+ G ++ +G+ L+F P V+ Sbjct: 257 QKGVVRTLAEPNLSALSGQEAKFLAGGEYPVP-VAQEGGVITIEFKPFGIELNFIPRVID 315 Query: 325 PGRIGLRIQTEVS--EPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I L + VS +P + ++ + ++ R+ TTVE+ G + +AGL++D+ Sbjct: 316 GDLINLELNAAVSAIDPTNSLELSGLTIDAFSRRETSTTVEMRDGESFAIAGLIRDEFLD 375 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 +P L +P+LGALFR++ + RE+TE+ I + LV P L+ P D + + Sbjct: 376 NSSQLPWLGDVPVLGALFRSADYQREQTELVIIVSAHLVTPTRGEALTLPTDRVAPPSEK 435 Query: 441 KAFFFNRVNK-IYGPKEASEVEGQNYKGAIGFI 472 F F R ++ GP A+EV Q++ G+ G++ Sbjct: 436 DLFLFGRTSRNRAGP--AAEVAKQDFNGSYGYV 466 >gi|298487093|ref|ZP_07005143.1| type II/III secretion system protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158336|gb|EFH99406.1| type II/III secretion system protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 437 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 136/410 (33%), Positives = 209/410 (50%), Gaps = 24/410 (5%) Query: 44 IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 I KG K ++IG +V+ PVD V+V++P AD+ V SP +Y+FGK GQ ++ Sbjct: 28 IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKAAGQTSL 85 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I +G +G++ L + + A + L+ S R+ V+ G ++QD Sbjct: 86 IALGSEGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 142 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A +L+ LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 143 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNA 195 Query: 220 ---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G+ S + A S + + +L AL+ + LAEP Sbjct: 196 LFNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPN 255 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 +TA++GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EV Sbjct: 256 ITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEV 314 Query: 337 SEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 S + + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +P Sbjct: 315 SSLMSTITLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMP 374 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 ILG LFR+ RF R ETE+ I TP+LV+PV R ++ P D A A Sbjct: 375 ILGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 424 >gi|253996769|ref|YP_003048833.1| type II and III secretion system protein [Methylotenera mobilis JLW8] gi|253983448|gb|ACT48306.1| type II and III secretion system protein [Methylotenera mobilis JLW8] Length = 513 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 150/475 (31%), Positives = 240/475 (50%), Gaps = 44/475 (9%) Query: 1 MRYLQRTFFT-MMSIFLFSSNPSVAKLPPIKEAN-----------AAVINISDVEIGKGK 48 +RY M+ + L S P A P N AA S EI Sbjct: 16 LRYCVSNLLAAMLGVTLLSIAPLHAAEPQANMQNILVAAVTPKKVAARPTPSSTEIVPSV 75 Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++S+G + ++ L V++Q V V D V V SPR + L K +G VI++ G+ Sbjct: 76 ELSLGQSHLVRLPAGVNLQRVKVDDDKIVQVDVTSPREVVLHAKTIGSTMVIILDKSGQS 135 Query: 109 MLNLDILI-----ERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVE 162 + +D+ + D A L+ L++ + + I+V ++++VL G V + +A+ Sbjct: 136 AV-MDVRVVAAATAMDAASLQTKLQQIMPNEKGIKVSTAAESLVLSGTVSDAVKADKAMA 194 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 L+E + G+++ KKV+N+L +A QV L+V +AEV +++L ++G + S Sbjct: 195 LAEAY---GGKDK-----DKKVINMLQVAAPQQVMLEVKMAEVSKNLLDKLGASFGASRS 246 Query: 223 SSGPSKSFAADF----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G + + A+ F G +S GG ++ + + + A + ++ LAEP + Sbjct: 247 NGGVAYAIASGFLSLTGADPLSPGGLLTIT----KGNTAIKVDAENKDGVVKILAEPNII 302 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATS----VTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 AISGQ SF +GG+ S+TG S + D+GV L FTPTVL G I LR+ Sbjct: 303 AISGQEGSFLAGGKIFIPVPQSNTGGGSNVLTLEERDFGVGLKFTPTVLEEGMINLRVAP 362 Query: 335 EVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVSE G V PS+ VR+ TTV+L G + +AGL+K+++ + P+L +I Sbjct: 363 EVSELNQGGTTVGGSVFPSFTVRRVATTVQLRDGQSFAIAGLIKNNVTENVRRFPILGEI 422 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 PILGALFR+S F ++TE+ TP LVKP+ D + P D ++ A+ FF N Sbjct: 423 PILGALFRSSSFQEDKTELLFVITPRLVKPLP-PDFALPTDKFTPPSKAE-FFLN 475 >gi|167719684|ref|ZP_02402920.1| type II/III secretion system protein [Burkholderia pseudomallei DM98] gi|167902788|ref|ZP_02489993.1| type II/III secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 448 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++++P V V+DP ADV V +P+ +++ GK G + +G + + +L ++++ Sbjct: 35 MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 94 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L + + ++++ G V + D+ V+ + +L Q Sbjct: 95 DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 147 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++N L +A QV L+V I EV R+I +Q+G S G+S F G+ Sbjct: 148 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 201 Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S G FSV G R+S + VL AL++ I LAEP LTAISGQ+AS Sbjct: 202 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 261 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344 F +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVSE P V Sbjct: 262 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 321 Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+LG LF + Sbjct: 322 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 381 Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430 + ++TE+ + TP++V+P A+ D++RP Sbjct: 382 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 416 >gi|76811933|ref|YP_333435.1| RhcC2 [Burkholderia pseudomallei 1710b] gi|126441311|ref|YP_001058908.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|126453026|ref|YP_001066150.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|134282366|ref|ZP_01769071.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|217421397|ref|ZP_03452901.1| type II/III secretion system protein [Burkholderia pseudomallei 576] gi|226196310|ref|ZP_03791892.1| type II/III secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|242314528|ref|ZP_04813544.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|254179872|ref|ZP_04886471.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|254188722|ref|ZP_04895233.1| type II/III secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254197611|ref|ZP_04904033.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|254261104|ref|ZP_04952158.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] gi|254297713|ref|ZP_04965166.1| type II/III secretion system protein [Burkholderia pseudomallei 406e] gi|76581386|gb|ABA50861.1| RhcC2 [Burkholderia pseudomallei 1710b] gi|126220804|gb|ABN84310.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|126226668|gb|ABN90208.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|134246404|gb|EBA46493.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|157806781|gb|EDO83951.1| type II/III secretion system protein [Burkholderia pseudomallei 406e] gi|157936401|gb|EDO92071.1| type II/III secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|169654352|gb|EDS87045.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|184210412|gb|EDU07455.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|217395139|gb|EEC35157.1| type II/III secretion system protein [Burkholderia pseudomallei 576] gi|225931527|gb|EEH27532.1| type II/III secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|242137767|gb|EES24169.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|254219793|gb|EET09177.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] Length = 482 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++++P V V+DP ADV V +P+ +++ GK G + +G + + +L ++++ Sbjct: 69 MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 128 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L + + ++++ G V + D+ V+ + +L Q Sbjct: 129 DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 181 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++N L +A QV L+V I EV R+I +Q+G S G+S F G+ Sbjct: 182 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 235 Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S G FSV G R+S + VL AL++ I LAEP LTAISGQ+AS Sbjct: 236 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 295 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344 F +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVSE P V Sbjct: 296 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 355 Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+LG LF + Sbjct: 356 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 415 Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430 + ++TE+ + TP++V+P A+ D++RP Sbjct: 416 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 450 >gi|326388864|ref|ZP_08210446.1| type II and III secretion system protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206464|gb|EGD57299.1| type II and III secretion system protein [Novosphingobium nitrogenifigens DSM 19370] Length = 565 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 135/424 (31%), Positives = 213/424 (50%), Gaps = 40/424 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 ISIG +++ L P ++ DV V++ ADV V S +Y+FGK G+ V G + Sbjct: 78 ISIGRGELVTL--PGNMTDVFVANENIADVQVKSGNQLYIFGKAGGETTVYASNGRGDVI 135 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + +I + ++ ++ L + +++I +++TV+L G V +D+ A L + F+ Sbjct: 136 WSANIRVGNNLDSIDQMLHMAMPEAHIATATMNNTVLLTGTVSAPEDAAEAERLVKAFVG 195 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----- 224 + V++ L +A QV L V AEV R + + I + ++S Sbjct: 196 E----------KTNVISRLKMATPLQVNLHVKFAEVSRTLTRSIQSNWTTADATSGLKFG 245 Query: 225 -GPSKSFAADF--GGKF---------------VSEGGDFSVKGVLDRFSFETVLHALERA 266 G +SF + GG VS G ++ + SF L E Sbjct: 246 LGQGRSFFPQYVPGGPLGMGTATTTGATAVSPVSTGTTLALASKVFGLSFLAALDLAESI 305 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + TLAEP LTA+SG++A F +GG++ VSS G V +YGV L +TPTVL+ G Sbjct: 306 GLVSTLAEPNLTALSGETAEFLAGGEYPIP-VSSGLGTVPVQYKNYGVSLAYTPTVLANG 364 Query: 327 RIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 RI LR++ EVSE + +N +P+ VR+A+TT+EL SG + ++AGLLK+ Q Sbjct: 365 RISLRVRPEVSELSSDGAVSLNGYSVPALSVRRAETTIELGSGQSFMIAGLLKNSSQNTI 424 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +P +PILG+LFR++ + R ETE+ I TP+LV PV ++ P D + K Sbjct: 425 AKMPGAGDLPILGSLFRSTSYQRGETELVIIVTPYLVNPVDPSEIHLPTDGFKSAGALKQ 484 Query: 443 FFFN 446 N Sbjct: 485 ILGN 488 >gi|167824270|ref|ZP_02455741.1| type II/III secretion system protein [Burkholderia pseudomallei 9] gi|167919049|ref|ZP_02506140.1| type II/III secretion system protein [Burkholderia pseudomallei BCC215] Length = 444 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++++P V V+DP ADV V +P+ +++ GK G + +G + + +L ++++ Sbjct: 31 MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 90 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L + + ++++ G V + D+ V+ + +L Q Sbjct: 91 DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 143 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++N L +A QV L+V I EV R+I +Q+G S G+S F G+ Sbjct: 144 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 197 Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S G FSV G R+S + VL AL++ I LAEP LTAISGQ+AS Sbjct: 198 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 257 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344 F +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVSE P V Sbjct: 258 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 317 Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+LG LF + Sbjct: 318 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 377 Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430 + ++TE+ + TP++V+P A+ D++RP Sbjct: 378 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 412 >gi|167738675|ref|ZP_02411449.1| type II/III secretion system protein [Burkholderia pseudomallei 14] Length = 434 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++++P V V+DP ADV V +P+ +++ GK G + +G + + +L ++++ Sbjct: 21 MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 80 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L + + ++++ G V + D+ V+ + +L Q Sbjct: 81 DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 133 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++N L +A QV L+V I EV R+I +Q+G S G+S F G+ Sbjct: 134 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 187 Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S G FSV G R+S + VL AL++ I LAEP LTAISGQ+AS Sbjct: 188 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 247 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344 F +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVSE P V Sbjct: 248 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 307 Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+LG LF + Sbjct: 308 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 367 Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430 + ++TE+ + TP++V+P A+ D++RP Sbjct: 368 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 402 >gi|53719431|ref|YP_108417.1| putative fimbriae assembly-related protein [Burkholderia pseudomallei K96243] gi|167815898|ref|ZP_02447578.1| RhcC2 [Burkholderia pseudomallei 91] gi|167845816|ref|ZP_02471324.1| RhcC2 [Burkholderia pseudomallei B7210] gi|52209845|emb|CAH35817.1| putative fimbriae assembly-related protein [Burkholderia pseudomallei K96243] Length = 439 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++++P V V+DP ADV V +P+ +++ GK G + +G + + +L ++++ Sbjct: 26 MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 85 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L + + ++++ G V + D+ V+ + +L Q Sbjct: 86 DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 138 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++N L +A QV L+V I EV R+I +Q+G S G+S F G+ Sbjct: 139 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 192 Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S G FSV G R+S + VL AL++ I LAEP LTAISGQ+AS Sbjct: 193 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 252 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344 F +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVSE P V Sbjct: 253 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 312 Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+LG LF + Sbjct: 313 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 372 Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430 + ++TE+ + TP++V+P A+ D++RP Sbjct: 373 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 407 >gi|71733713|ref|YP_274717.1| type III secretion component [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554266|gb|AAZ33477.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 437 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 136/410 (33%), Positives = 207/410 (50%), Gaps = 24/410 (5%) Query: 44 IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 I KG K ++IG +V+ PVD V+V++P AD+ V SP +Y+FGK GQ ++ Sbjct: 28 IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKAAGQTSL 85 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I + DG++ L + + A + L+ S R+ V+ G ++QD Sbjct: 86 IALDSDGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 142 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A +L+ LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 143 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNA 195 Query: 220 ---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G+ S + A S + + +L AL+ + LAEP Sbjct: 196 LFNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPN 255 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 +TA++GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EV Sbjct: 256 ITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEV 314 Query: 337 SE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 S + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +P Sbjct: 315 SSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMP 374 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 ILG LFR+ RF R ETE+ I TP+LV+PV R ++ P D A A Sbjct: 375 ILGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 424 >gi|167911033|ref|ZP_02498124.1| type II/III secretion system protein [Burkholderia pseudomallei 112] Length = 438 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++++P V V+DP ADV V +P+ +++ GK G + +G + + +L ++++ Sbjct: 25 MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 84 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L + + ++++ G V + D+ V+ + +L Q Sbjct: 85 DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 137 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++N L +A QV L+V I EV R+I +Q+G S G+S F G+ Sbjct: 138 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 191 Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S G FSV G R+S + VL AL++ I LAEP LTAISGQ+AS Sbjct: 192 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 251 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344 F +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVSE P V Sbjct: 252 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 311 Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+LG LF + Sbjct: 312 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 371 Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430 + ++TE+ + TP++V+P A+ D++RP Sbjct: 372 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 406 >gi|149186255|ref|ZP_01864569.1| type II secretion system protein [Erythrobacter sp. SD-21] gi|148830286|gb|EDL48723.1| type II secretion system protein [Erythrobacter sp. SD-21] Length = 522 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 135/427 (31%), Positives = 223/427 (52%), Gaps = 51/427 (11%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 ++I + + + ++ VP ++ DV +S+ ADV V S R +YLFGK+ G+ V G Sbjct: 37 QEIVLSIGRGELVNVPGNMADVFISNENVADVQVKSRRQLYLFGKSGGETTVYASNAAGD 96 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSET 166 + ++ + +I ++ L + ++ I V M ++TV+L G V +D+ A L + Sbjct: 97 IIWAANVRVGSNIGSIDQMLSLAMPEAKINVATMGNNTVLLTGTVAAPEDAADAQSLVQA 156 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG- 225 ++ + G N V++ L +A QV L+V IAEV R +++ IG + SSSG Sbjct: 157 YVGE-GTN---------VISRLRMATPLQVNLQVRIAEVSRSVVRAIGVNLATVDSSSGF 206 Query: 226 -----PSKSFAADFGGKFVSE------------GGDFSVKG--VLDRFSFETVLHAL--- 263 + + F FV+ G +F +G ++D+ + + L A Sbjct: 207 QFGVGQGRGAVSQFQPSFVNPVTGERIQGPLAVGQEFEGEGATIIDQITPGSTLGAFGNL 266 Query: 264 ------------ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 E + TL++P LTA+SG++A F +GG+ +S G T++ + Sbjct: 267 LGLDIGAALDLAETQGLVTTLSQPNLTALSGETAEFLAGGEFPIP-LSQGLGTTTIEYKN 325 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGT 367 YGV L +TPTVL+ GRI +R++ EVSE I +N +P+ R+A+TTVEL SG + Sbjct: 326 YGVSLAYTPTVLANGRISIRVRPEVSELSSQGSITLNGFQVPALITRRAETTVELGSGQS 385 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 ++AGLL ++ Q E P L +P++G LFR++ + + ETE+ I TP+LVKPV D+ Sbjct: 386 FMIAGLLSNNSQNSIEKAPGLGDVPVIGNLFRSTTYRKGETELVIVVTPYLVKPVNANDI 445 Query: 428 SRPDDHY 434 P D Y Sbjct: 446 RLPTDGY 452 >gi|121600042|ref|YP_993006.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|124383335|ref|YP_001026338.1| type II secretion system protein [Burkholderia mallei NCTC 10229] gi|126450127|ref|YP_001080388.1| RhcC2 [Burkholderia mallei NCTC 10247] gi|237812165|ref|YP_002896616.1| type II/III secretion system protein [Burkholderia pseudomallei MSHR346] gi|254178619|ref|ZP_04885274.1| RhcC2 [Burkholderia mallei ATCC 10399] gi|254358540|ref|ZP_04974813.1| RhcC2 [Burkholderia mallei 2002721280] gi|121228852|gb|ABM51370.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|124291355|gb|ABN00624.1| putative type II secretion system protein [Burkholderia mallei NCTC 10229] gi|126242997|gb|ABO06090.1| RhcC2 [Burkholderia mallei NCTC 10247] gi|148027667|gb|EDK85688.1| RhcC2 [Burkholderia mallei 2002721280] gi|160699658|gb|EDP89628.1| RhcC2 [Burkholderia mallei ATCC 10399] gi|237503093|gb|ACQ95411.1| type II/III secretion system protein [Burkholderia pseudomallei MSHR346] Length = 482 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++++P V V+DP ADV V +P+ +++ GK G + +G + + +L ++++ Sbjct: 69 MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 128 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L + + ++++ G V + D+ V+ + +L Q Sbjct: 129 DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 181 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++N L +A QV L+V I EV R+I +Q+G S G+S F G+ Sbjct: 182 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 235 Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S G FSV G R+S + VL AL++ I LAEP LTAISGQ+AS Sbjct: 236 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 295 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344 F +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVSE P V Sbjct: 296 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 355 Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+LG LF + Sbjct: 356 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 415 Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430 + ++TE+ + TP++V+P A+ D++RP Sbjct: 416 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 450 >gi|307294424|ref|ZP_07574268.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] gi|306880575|gb|EFN11792.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] Length = 503 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 142/484 (29%), Positives = 231/484 (47%), Gaps = 57/484 (11%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 ++ + S+ S+ S+ LP +A A +N+S+ ++ + LNK +L Sbjct: 5 KSLPMLASLLTLSAGASL--LPIQAQAQIASLNLSNAN--HAGQLDVPLNKSQVLTADRP 60 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 LV + ADV+ + R++Y+ GK +G ++ L + +D+ + D+ L+ Sbjct: 61 FAKALVGNAEIADVLPMTNRSVYVLGKKMGTTSLTLYDSRNIMIAVVDVAVGPDVVTLKR 120 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 L + I + +D+VVL G + + RAV++++T+ + KV+ Sbjct: 121 QLSDLLPGQPIGARISNDSVVLTGTLSSAAAVDRAVQIAKTY------------AGDKVV 168 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---------SGPSKSFAADFGG 236 N++++ QV L+V +E+ R KQ G + S + S + +D G Sbjct: 169 NMMSVGASQQVMLEVRFSEMSRGAAKQFGINTAFLSDSGKVVGGIGNAAQSSAILSDTNG 228 Query: 237 KFVSEGGDFSVKGVLDRF------------SFETVLHALERATAIRTLAEPTLTAISGQS 284 + + + + +LD F + T L ALER + TLAEPTL A+SG++ Sbjct: 229 RPIVD-----LSKILDSFGIGAANFSIGSLNITTALDALERKGVVTTLAEPTLVALSGET 283 Query: 285 ASFTSGGQH-----------LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 ASF +GG+ +S A ++ +GV L FTPTVL G I L ++ Sbjct: 284 ASFLAGGEFPIPVAQSNSGGGGGGGGNSGNAITIEFKPFGVSLGFTPTVLDDGIINLVVE 343 Query: 334 TEVS--EPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 EVS +P + VN +P + R+A TT+EL G + LAGLL+ D Q P+L Sbjct: 344 PEVSSIDPSASVTVNGLTIPGLQTRRASTTLELRDGQSFALAGLLRKDFQDTVRQFPILG 403 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 IPI+GALFR+S F + ETE+ I TP LVKP+ D++ P D + F R + Sbjct: 404 SIPIIGALFRSSGFQKSETELVIIVTPRLVKPMRAEDVALPTDRVKPPHELDLFLMGRTD 463 Query: 450 KIYG 453 K G Sbjct: 464 KAVG 467 >gi|167894387|ref|ZP_02481789.1| type II/III secretion system protein [Burkholderia pseudomallei 7894] Length = 426 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++++P V V+DP ADV V +P+ +++ GK G + +G + + +L ++++ Sbjct: 13 MVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 72 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L + + ++++ G V + D+ V+ + +L Q Sbjct: 73 DTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 125 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++N L +A QV L+V I EV R+I +Q+G S G+S F G+ Sbjct: 126 ---EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 179 Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S G FSV G R+S + VL AL++ I LAEP LTAISGQ+AS Sbjct: 180 LFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 239 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344 F +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVSE P V Sbjct: 240 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 299 Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+LG LF + Sbjct: 300 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 359 Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430 + ++TE+ + TP++V+P A+ D++RP Sbjct: 360 YLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRP 394 >gi|330876206|gb|EGH10355.1| type III secretion component [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 437 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 134/410 (32%), Positives = 206/410 (50%), Gaps = 24/410 (5%) Query: 44 IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 I KG K ++IG +V+ PVD V+V++P AD+ V SP +Y+FGK GQ ++ Sbjct: 28 IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKAAGQTSL 85 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I + +G++ L + + A + L+ S R+ V+ G ++QD Sbjct: 86 IALDSEGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 142 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A +L+ LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 143 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNA 195 Query: 220 ---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G+ S + S + + +L AL+ + LAEP Sbjct: 196 LFNNGTFSFGLLTGGGLAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPN 255 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 +TA++GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EV Sbjct: 256 ITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEV 314 Query: 337 SE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 S + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +P Sbjct: 315 SSLMSTSTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMP 374 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 ILG LFR+ RF R ETE+ I TP+LV+PV R ++ P D A A Sbjct: 375 ILGNLFRSKRFQRNETELVILITPYLVEPVKARVVATPLDKQRAASTASA 424 >gi|78062906|ref|YP_372814.1| type II and III secretion system protein [Burkholderia sp. 383] gi|77970791|gb|ABB12170.1| type II and III secretion system protein [Burkholderia sp. 383] Length = 460 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 135/421 (32%), Positives = 216/421 (51%), Gaps = 42/421 (9%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +SI K +L +P + V+DP AD+ V SPRT+++FGK G +I +G + Sbjct: 33 GAALSIATGKGELLSLPEPATAMFVADPAIADIQVPSPRTVFVFGKKAGTTTLIALGANH 92 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +L ++++ D A L+ L + V ++++ G V + D+ ++ Sbjct: 93 RPILRKTVIVQVDTASLQGVLDSRFPQLKLSVSGAPGSLMVSGKVPSAADADAVMQSLTP 152 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +L +K++N L ++ QV L+V + EV R+I +Q+G I SS G Sbjct: 153 YLHDK----------EKIVNRLTLSRPIQVNLRVRVTEVSRNITQQLG----INWSSLGG 198 Query: 227 SKSFAAD-FGGKFV----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLA 273 + +F F G+ + S G FSV G R+S + VL AL++ I LA Sbjct: 199 AGNFVGGLFNGRTLFDPTNGLFNLSPTGAFSVLGGFRAGRWSIDVVLDALDQEGLITMLA 258 Query: 274 EPTLTAISGQSASFTSGGQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 EP LTA+SG++ASF +GG+ SSTGA +V +GV L FTPTVL+ RI L+ Sbjct: 259 EPNLTAMSGETASFLAGGEIPIPVAQAGSSTGAITVEFKPFGVSLDFTPTVLADNRISLK 318 Query: 332 IQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 ++ EVSE + +P VR+ DTTVEL SG + + GLL+ IP Sbjct: 319 VRPEVSEIDTNNSVTTGGVKVPGLTVRRVDTTVELSSGQSFAIGGLLQSQTADTVSQIPG 378 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-------AMRDLSRP--DDHYSVED 438 L ++PI+G LF + F +TE+ + TP++V+P A+ ++RP D ++V+ Sbjct: 379 LGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQAIDTVARPSSDLEFAVQH 438 Query: 439 D 439 + Sbjct: 439 N 439 >gi|307293450|ref|ZP_07573296.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] gi|306881516|gb|EFN12732.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] Length = 499 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 139/430 (32%), Positives = 224/430 (52%), Gaps = 34/430 (7%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 NAA ++ D I +S+G +KVI L P + DV++ DP DV V S +YL K Sbjct: 36 NAAPASMQDNAI----LLSVGGSKVINL--PAKMSDVVIGDPDVVDVHVRSQNQLYLIAK 89 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G+ V +GK + + + + ++ ++ L+ + ++ I V ++ V+L G + Sbjct: 90 KAGETTVFATAINGKVLFSGTVRVGNNLTSIDDMLKLAMPNAEIAVNKMNGMVLLTGTIA 149 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 +D+ A L++ F+ + V++ L A QV L+V IAEV +D+ + Sbjct: 150 APEDAAEAERLTQAFVGKE----------VTVVSRLRTATPLQVNLQVKIAEVSKDVGHK 199 Query: 213 IGFQHS-----------ITGSSSGPSKSFAADFGG--KFVSEGGDFSVKGVLDRFSFE-- 257 IG G + + +F + GG F ++GG +S+ GV + Sbjct: 200 IGMNWKSQDLTGGKWAGGIGGGTRDAITFNSGGGGTFNFTADGG-YSLAGVARVLGLDLG 258 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 VL E + TLA+P LT++SG++ASF +GG++ Y TVS+ T S+ YGV L Sbjct: 259 AVLDLAESSGLATTLAQPNLTSLSGETASFLAGGEYPY-TVSNGTQGNSIEFKQYGVQLA 317 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 FTPTVL+ GRI LR++ VS + + +P+ R R A+TTVEL SG ++AGLL +D Sbjct: 318 FTPTVLADGRISLRVRPTVSS-LDFSVSSSVPALRSRTAETTVELGSGQAFMIAGLLNND 376 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +P + +PILG+LF++ F R ETE+ I TP+LVKP+ D+ P D + Sbjct: 377 TANNINKVPGIGNLPILGSLFKSRNFQRHETELVIVVTPYLVKPMNASDVRLPTDGFRNA 436 Query: 438 DDAKAFFFNR 447 ++ + F + Sbjct: 437 NEGQGLFLQQ 446 >gi|320324504|gb|EFW80581.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320328376|gb|EFW84379.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. race 4] Length = 429 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 135/410 (32%), Positives = 207/410 (50%), Gaps = 24/410 (5%) Query: 44 IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 I KG K ++IG +V+ PVD V+V++P AD+ V SP +Y+FG+ GQ ++ Sbjct: 20 IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGQAAGQTSL 77 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I + DG++ L + + A + L+ S R+ V+ G ++QD Sbjct: 78 IALDSDGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 134 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A +L+ LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 135 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNA 187 Query: 220 ---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G+ S + A S + + +L AL+ + LAEP Sbjct: 188 LFNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPN 247 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 +TA++GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EV Sbjct: 248 ITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEV 306 Query: 337 SE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 S + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +P Sbjct: 307 SSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQHESSQDMDKVPMLGDMP 366 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 ILG LFR+ RF R ETE+ I TP+LV+PV R ++ P D A A Sbjct: 367 ILGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 416 >gi|56697919|ref|YP_168290.1| type II/III secretion system protein [Ruegeria pomeroyi DSS-3] gi|56679656|gb|AAV96322.1| bacterial type II/III secretion system protein [Ruegeria pomeroyi DSS-3] Length = 475 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 128/451 (28%), Positives = 228/451 (50%), Gaps = 33/451 (7%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V+ G + + + +N+ I+++ ++ +++ AD+ S RT+Y+ GK+ G + L Sbjct: 40 VKQGAAETLDVPMNRAIVVESETPFAELSIANAGIADISSLSDRTIYVLGKSPGLTTLSL 99 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G+ + N+++ + D+A + L++ + + I V +D +VL G + QRA+ Sbjct: 100 FDAGGRLITNVNVRVSFDVAEFKERLKQILPNEKIEVRTANDGIVLSGTASSTARLQRAL 159 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +L+E + + ++V NL+++AG QV LKV AE++R + K + ++G Sbjct: 160 DLAERY------------APERVSNLMSVAGVQQVMLKVRFAEMQRSVSKSLSASLGVSG 207 Query: 222 -------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-----FETVLHALERATAI 269 ++ S S GG + + +L FS +L ALER + Sbjct: 208 GNIVGGLNTLNSSGSLTNAIGGSIPALNDN--AGAILFGFSAGSTQVRLLLEALERKGVV 265 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 RTLAEP L+A+SGQ A F +GG++ V+ G +V +GV + F P V+ I Sbjct: 266 RTLAEPNLSALSGQEAKFLAGGEYPIP-VAQRDGLFTVEYKPFGVEMAFIPRVVDGDLIN 324 Query: 330 LRIQTEVS--EP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L + VS +P + VN D+ +++ R+ TTVEL G + +AGL++D+ + + Sbjct: 325 LELLAAVSSLDPNNSVTVNGFDIAAFQRRETSTTVELKDGESFAIAGLIEDEFLDNNQQL 384 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P L +P+LGALFR++ + R +TE+ I T LV P L+ P D +A F Sbjct: 385 PWLGDVPVLGALFRSANYQRSQTELVIIITAHLVSPTRGEALALPTDRVKPPSEADLFLR 444 Query: 446 NRVNKIYGPK--EASEVEGQNYKGAIGFIYK 474 + + + ASEV Q++ G+ G++ + Sbjct: 445 GKTARTERARGGAASEVARQDFSGSYGYVLE 475 >gi|99082186|ref|YP_614340.1| type II and III secretion system protein [Ruegeria sp. TM1040] gi|99038466|gb|ABF65078.1| Hypothetical 443 kDa protein y4xJ [Ruegeria sp. TM1040] Length = 497 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 125/460 (27%), Positives = 225/460 (48%), Gaps = 48/460 (10%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 IS ++ G + + +N+ ++++ V ++ +++P+ AD+ S RT+Y+ GK+ G Sbjct: 58 ISVLKKGTNAVLDVPMNRAVVVEADVPFAELSIANPSIADISSLSDRTIYVLGKSPGLTT 117 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 + L+ G + N+D+ + D++ + L++ + + I V +D +VL G V + Q Q Sbjct: 118 LTLLDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSGTVSSAQRLQ 177 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 RA++L+E + + +V NL+ + G QV LKV AE+ R + K +G Sbjct: 178 RALDLAERY------------APDRVSNLMTVGGIQQVMLKVRFAEMERSVSKSLGGSML 225 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---------------------VLDRFSFE 257 I S + G F + GG+ ++ G + F Sbjct: 226 IRSSDGAIAT-------GSFQNRGGNGNIFGDSVTSPVQLQSETLGAALFGFDIGAVQFN 278 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 +L ALE+ +RTLAEP L+A+SGQ A+F +GG++ V+ G +V +G+ L+ Sbjct: 279 VLLEALEQKGLVRTLAEPNLSALSGQEANFLAGGEYPVP-VAQEDGVITVEFKPFGIELN 337 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-----RKADTTVELPSGGTIVLAG 372 F P V+ I L ++ VS + N+ + + R+ TTVEL G + +AG Sbjct: 338 FIPRVVDGDLINLELKAAVSA-IDTTNSATFDGFSINAFSRRETATTVELRDGESFAIAG 396 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L++D+ + +P L +P+LGALFR++ + R ++E+ I + LV P L+ P D Sbjct: 397 LIEDEFRDGAAQVPWLGDVPVLGALFRSADYARNQSELVIIVSAHLVTPTRGEALALPTD 456 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 + F F + + A EV Q++ G+ G++ Sbjct: 457 RIRPPSEKNLFLFGQTERAQA-GAAGEVANQDFNGSYGYL 495 >gi|254475652|ref|ZP_05089038.1| type II and III secretion system protein:Transport-associated [Ruegeria sp. R11] gi|214029895|gb|EEB70730.1| type II and III secretion system protein:Transport-associated [Ruegeria sp. R11] Length = 452 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 130/457 (28%), Positives = 230/457 (50%), Gaps = 49/457 (10%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V+ G + + +N+ ++++ V ++ +++P+ AD+ S RT+Y+ GK+ G + Sbjct: 17 VKKGTSSNLEVPMNRAVVVESDVPFSELSIANPSIADISSLSDRTIYVLGKSPGPDHPHA 76 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G+ + N+D+ + D++ + LR+ + I V +D +VL G+V + QRA+ Sbjct: 77 FGCVGRLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGIVLSGVVSSSARLQRAL 136 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ--------- 212 +L+E + + +V NL+++ G QV LKV AE++R + K Sbjct: 137 DLAERY------------APDRVSNLMSVGGVQQVMLKVRFAEMQRTVSKSLSASLGVNG 184 Query: 213 ------------IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 + Q ++T S +G + A D G FV F F +L Sbjct: 185 GNSVGVNGGTSTLNTQGALTNSLTG-NIPAANDNTGAFV-----FGFNA--GAFQVNLLL 236 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ALE+ +RTLAEP L+A+SGQ A F +GG++ V+ G ++ +G+ L+F P Sbjct: 237 EALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDGVITIEFKPFGIELNFIP 295 Query: 321 TVLSPGRIGLRIQTEVS--EPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 V+ I L ++ VS +P I +N + ++ R++ TTVE+ G + +AGL++D Sbjct: 296 RVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRESVTTVEMRDGESFAIAGLIRD 355 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + + +P + +P+LG+LFR++ + R +TE+ I + LV P LS P D Sbjct: 356 EFRDNSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLVTPTRGEALSLPTDRIRP 415 Query: 437 EDDAKAFFFNRVNKIY-GPKEASEVEGQNYKGAIGFI 472 + F F V + GP ASEV Q++ G+ G++ Sbjct: 416 PSETDLFLFGNVARERKGP--ASEVAKQDFNGSYGYV 450 >gi|289624387|ref|ZP_06457341.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646614|ref|ZP_06477957.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868629|gb|EGH03338.1| type III secretion component [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 429 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 135/410 (32%), Positives = 207/410 (50%), Gaps = 24/410 (5%) Query: 44 IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 I KG K ++IG +V+ PVD V+V++P AD+ V SP +Y+FGK GQ ++ Sbjct: 20 IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKAAGQTSL 77 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I + +G++ L + + A + L+ S R+ V+ G ++QD Sbjct: 78 IALDSEGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 134 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A +L+ LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 135 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNA 187 Query: 220 ---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G+ S + A S + + +L AL+ + LAEP Sbjct: 188 LFNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPN 247 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 +TA++GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EV Sbjct: 248 ITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEV 306 Query: 337 SE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 S + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +P Sbjct: 307 SSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMP 366 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 ILG LFR+ RF R ETE+ I TP+LV+PV R ++ P D A A Sbjct: 367 ILGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 416 >gi|296284552|ref|ZP_06862550.1| type II and III secretion system protein [Citromicrobium bathyomarinum JL354] Length = 502 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 142/451 (31%), Positives = 219/451 (48%), Gaps = 52/451 (11%) Query: 26 LPPIKEANAAVINISDV--EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83 +P + +A + V D+ IGKG+ ++ VP + DV +++ + AD+ V S Sbjct: 15 VPTMADAQSVVRPTQDIVLSIGKGE----------LINVPGSMADVFIANDSIADIQVKS 64 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE-MVS 142 R +YLFGK+ G+ V G + ++ + +I L+ L + + I V M S Sbjct: 65 QRQLYLFGKSGGETTVYASNAAGDVIWAANVRVGSNIGSLDQMLALAMPQAKISVATMGS 124 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 +TV+L G V +D+ A L FL V+ L A QV L+V Sbjct: 125 NTVLLTGTVANPEDAAEAERLVSAFLGDE----------TNVIARLTTATPLQVNLQVRF 174 Query: 203 AEVRRDILKQIG-----------FQHSIT-GSSSGPS----------KSFAADFGGKFVS 240 AEV R +++ IG FQ +T G + P + +D Sbjct: 175 AEVSRSLVRAIGANLLSSDATNGFQFGVTRGRNFAPQYTPGGPVGVGVTGGSDGSTVITG 234 Query: 241 EGGDFSVKGVLDRFSFE--TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ G+ F + L E + TL++P LTA+SG++A F +GG+ + Sbjct: 235 NGTGATIAGLGSLFGMDLAAALDLAETNGLVSTLSQPNLTALSGETADFLAGGEFPIP-I 293 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVR 354 S GATSV +YGV L +TPTVL+ GRI +R+ EVSE + ++ +P+ R Sbjct: 294 SQGLGATSVEYRNYGVKLTYTPTVLANGRISIRVSPEVSELSSQGAVSLDGVQIPALITR 353 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +A TTVEL SG + ++AGL+ ++ Q + P L +PILG LFR++ F + ETE+ I Sbjct: 354 RASTTVELGSGQSFMIAGLMTNNSQSTIDKAPGLGDVPILGNLFRSNSFRKGETELVIVI 413 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 TP+LVKPV D+ P D Y+ D F Sbjct: 414 TPYLVKPVDGNDIRLPTDGYNSPDTLSQLGF 444 >gi|197295153|ref|YP_002153694.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|195944632|emb|CAR57236.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 644 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 124/407 (30%), Positives = 213/407 (52%), Gaps = 18/407 (4%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ L K +++ +P V++ + +P A + SP+T+Y+ G VG N+I+ G G Sbjct: 100 VAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIVQGKSGACR 159 Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D L+ +L + + + +I V + T+VL G V + Q +Q+AV+++ + Sbjct: 160 V-IDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQAVQIAHAYG 218 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 +G V+N+LN+ QV L+V +AEV + ++ Q+G +I G S Sbjct: 219 DSAGDAAGGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQGGFGSWSG 278 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + ++ V+ G F+ + F A ++ LAEP L ISGQ A+F Sbjct: 279 ALVSNLLAG-VASGAVFNKA---NNRPFSIAADAQNTDNLVKILAEPNLVTISGQEATFL 334 Query: 289 SGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE------P 339 +GG+ SS TS T ++GV L FTPTVL+ GRI L++ EVSE Sbjct: 335 AGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVT 394 Query: 340 VIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + N G +P R+A TTV++ G + + GL+KD+ + IP + ++P+LGA Sbjct: 395 LSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGVGEVPVLGA 454 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 LFR++ F ++ TE+ TP LVKP+ D++ P D +S ++ + Sbjct: 455 LFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVY 501 >gi|83716099|ref|YP_440456.1| type II and III secretion system protein [Burkholderia thailandensis E264] gi|83649924|gb|ABC33988.1| Bacterial type II and III secretion system protein domain protein [Burkholderia thailandensis E264] Length = 679 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 130/421 (30%), Positives = 219/421 (52%), Gaps = 31/421 (7%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 +G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ G Sbjct: 96 MGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQG 155 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 156 KSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVA 214 Query: 163 LSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + ++ V+N+L + QV L+V +AEV + ++ Q+G ++ Sbjct: 215 IAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNL 274 Query: 220 TGSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G + + G VS+ + G +D A ++ LAE Sbjct: 275 QGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSID---------AQNTDQPVKILAE 325 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLR 331 P L ISGQ A+F +GG+ SS TS T ++GV L FTPTVLS GRI L+ Sbjct: 326 PRLVTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLK 385 Query: 332 IQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + EVSE + N G +P R+A TTV++ G T + GL+KD+ Q Sbjct: 386 VAPEVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTL 445 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + +P + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A Sbjct: 446 KALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADV 505 Query: 443 F 443 + Sbjct: 506 Y 506 >gi|167617230|ref|ZP_02385861.1| Bacterial type II and III secretion system protein domain protein [Burkholderia thailandensis Bt4] Length = 468 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 130/421 (30%), Positives = 219/421 (52%), Gaps = 31/421 (7%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 +G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ G Sbjct: 17 MGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQG 76 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 77 KSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVA 135 Query: 163 LSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + ++ V+N+L + QV L+V +AEV + ++ Q+G ++ Sbjct: 136 IAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNL 195 Query: 220 TGSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G + + G VS+ + G +D A ++ LAE Sbjct: 196 QGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSID---------AQNTDQPVKILAE 246 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLR 331 P L ISGQ A+F +GG+ SS TS T ++GV L FTPTVLS GRI L+ Sbjct: 247 PRLVTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLK 306 Query: 332 IQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + EVSE + N G +P R+A TTV++ G T + GL+KD+ Q Sbjct: 307 VAPEVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTL 366 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + +P + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A Sbjct: 367 KALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADV 426 Query: 443 F 443 + Sbjct: 427 Y 427 >gi|167579115|ref|ZP_02371989.1| Bacterial type II and III secretion system protein domain protein [Burkholderia thailandensis TXDOH] Length = 462 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 130/421 (30%), Positives = 219/421 (52%), Gaps = 31/421 (7%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 +G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ G Sbjct: 17 MGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQG 76 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 77 KSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVA 135 Query: 163 LSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + ++ V+N+L + QV L+V +AEV + ++ Q+G ++ Sbjct: 136 IAKAYSDRTNAAALGGGGGGPRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNL 195 Query: 220 TGSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G + + G VS+ + G +D A ++ LAE Sbjct: 196 QGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSID---------AQNTDQPVKILAE 246 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLR 331 P L ISGQ A+F +GG+ SS TS T ++GV L FTPTVLS GRI L+ Sbjct: 247 PRLVTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLK 306 Query: 332 IQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + EVSE + N G +P R+A TTV++ G T + GL+KD+ Q Sbjct: 307 VAPEVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTL 366 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + +P + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A Sbjct: 367 KALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADV 426 Query: 443 F 443 + Sbjct: 427 Y 427 >gi|170734868|ref|YP_001773982.1| type II and III secretion system protein [Burkholderia cenocepacia MC0-3] gi|169820906|gb|ACA95487.1| type II and III secretion system protein [Burkholderia cenocepacia MC0-3] Length = 646 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 127/407 (31%), Positives = 217/407 (53%), Gaps = 19/407 (4%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ L K +++ +P V++ + +P A + SP+T+Y+ G VG N+I+ G G Sbjct: 100 VAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIVQGRSGACR 159 Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D L+ +L + + + +I V + T+VL G V + Q +Q+AV+++ + Sbjct: 160 V-IDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQAVQIAHAYG 218 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 +G + V+N+LN+ QV L+V +AEV + ++ Q+G +I G S Sbjct: 219 DSAG-DAAGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQGGFGSWSG 277 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + ++ V+ G F+ + F A ++ LAEP L ISGQ A+F Sbjct: 278 ALVSNLLAG-VASGAVFNKA---NNKPFSIAADAQNTDNLVKILAEPNLVTISGQEATFL 333 Query: 289 SGGQHLYKTV-SSSTGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGV- 343 +GG+ S S G +S+T + +GV L FTPTVL+ GRI L++ EVSE GV Sbjct: 334 AGGKIFIPIPQSGSNGVSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVT 393 Query: 344 ----NAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 N G +P R+A TTV++ G + + GL+KD+ + IP + ++P+LGA Sbjct: 394 LSASNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGALKAIPGVGEVPVLGA 453 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 LFR++ F ++ TE+ TP LVKP+ D++ P D +S ++ F Sbjct: 454 LFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVF 500 >gi|46580524|ref|YP_011332.1| type II/III secretion system protein [Desulfovibrio vulgaris str. Hildenborough] gi|120602159|ref|YP_966559.1| type II and III secretion system protein [Desulfovibrio vulgaris DP4] gi|46449943|gb|AAS96592.1| type II/III secretion system protein [Desulfovibrio vulgaris str. Hildenborough] gi|120562388|gb|ABM28132.1| type II and III secretion system protein [Desulfovibrio vulgaris DP4] gi|311234263|gb|ADP87117.1| type II and III secretion system protein [Desulfovibrio vulgaris RCH1] Length = 484 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 130/427 (30%), Positives = 209/427 (48%), Gaps = 51/427 (11%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 +++ G + V+ PV + ++D A VVV SP+ +Y+ GK G + L G Sbjct: 44 QVATGKSSVVSTSRPVG--RLAIADEAIAGVVVLSPQQVYVTGKKAGTTTLTLWDGGGAV 101 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + D+ + DIA L+ L R + N I V V+DTV L G VR+ A++++ + Sbjct: 102 IGVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGVNDTVTLAGTVRSAASMTTAMDMARLY 161 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGS--- 222 + KV NL+ + G QV L+V +AE+RR++++++G ++ G Sbjct: 162 ------------APDKVTNLMQVGGVHQVMLEVKVAEMRRNVMERLGIDLTYAWRGDFIF 209 Query: 223 ----------------SSGPSKS-FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 +GPS + + + G F G S+ G LD L++ Sbjct: 210 GMLNQLFTLDSQKGVVDAGPSGAVLSPNVNGAFRITSGQVSIMGFLD---------VLKQ 260 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 ++ LAEPTL SG+ A F +GG+ + V G ++ ++GV L F PTV+ Sbjct: 261 NGLVKVLAEPTLVCRSGEKAEFLAGGE-IPIPVPQGLGTVAIEYKEFGVTLQFLPTVVGD 319 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 GRI +++ EVSE V+ + +P+ R+A TTVEL G + +AGLL+DD++Q Sbjct: 320 GRISMKVAPEVSELDYTNVVQIQGFTIPAITSRRASTTVELADGQSFAIAGLLRDDVRQA 379 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 P+L +P+LG LFR+S + + ETE+ I TP L KP+ P D Y + Sbjct: 380 VNKYPVLGDMPVLGTLFRSSNWQKNETELVIIVTPHLAKPLEANATRLPTDAYREPSAFE 439 Query: 442 AFFFNRV 448 F R+ Sbjct: 440 YFILGRM 446 >gi|107028248|ref|YP_625343.1| type II and III secretion system protein [Burkholderia cenocepacia AU 1054] gi|116687159|ref|YP_840406.1| type II and III secretion system protein [Burkholderia cenocepacia HI2424] gi|105897412|gb|ABF80370.1| type II and III secretion system protein [Burkholderia cenocepacia AU 1054] gi|116652874|gb|ABK13513.1| type II and III secretion system protein [Burkholderia cenocepacia HI2424] Length = 642 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 127/407 (31%), Positives = 217/407 (53%), Gaps = 19/407 (4%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ L K +++ +P V++ + +P A + SP+T+Y+ G VG N+I+ G G Sbjct: 100 VAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIVQGRSGACR 159 Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D L+ +L + + + +I V + T+VL G V + Q +Q+AV+++ + Sbjct: 160 V-IDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQAVQIAHAYG 218 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 +G + V+N+LN+ QV L+V +AEV + ++ Q+G +I G S Sbjct: 219 DSAG-DAAGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQGGFGSWSG 277 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + ++ V+ G F+ + F A ++ LAEP L ISGQ A+F Sbjct: 278 ALVSNLLAG-VASGAVFNKA---NNKPFSIAADAQNTDNLVKILAEPNLVTISGQEATFL 333 Query: 289 SGGQHLYK-TVSSSTGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGV- 343 +GG+ S S G +S+T + +GV L FTPTVL+ GRI L++ EVSE GV Sbjct: 334 AGGKIFIPIPQSGSNGVSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVT 393 Query: 344 ----NAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 N G +P R+A TTV++ G + + GL+KD+ + IP + ++P+LGA Sbjct: 394 LSASNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGALKAIPGVGEVPVLGA 453 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 LFR++ F ++ TE+ TP LVKP+ D++ P D +S ++ F Sbjct: 454 LFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVF 500 >gi|16520026|ref|NP_444146.1| outermembrane protein RhcC2; component of type III secretion apparatus [Sinorhizobium fredii NGR234] gi|2495099|sp|P55702|Y4XJ_RHISN RecName: Full=Uncharacterized protein y4xJ gi|2182718|gb|AAB91933.1| outermembrane protein RhcC2; component of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 423 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 128/384 (33%), Positives = 193/384 (50%), Gaps = 20/384 (5%) Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 + +P + V+DPT AD S RT+++FGK G+ ++ + +G+ + L +++ + Sbjct: 23 VHLPAPAATIFVADPTIADYQAPSNRTIFVFGKKFGRTSLFALDENGEALAELHVVVTQP 82 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 IA L LR + D I V +L G + A ++E FL Sbjct: 83 IADLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAEVVDIAKRVTEQFLGDGA------- 135 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---G 236 ++N + +AG QV L V +AEV R LK +G S G G K + G G Sbjct: 136 ---PIVNNIKVAGSLQVNLSVRVAEVSRSGLKALGINLSAFGQF-GNFKVGVLNRGAGLG 191 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 GG + D S VL AL + LAEP LTA+SG++ASF +GG+ Sbjct: 192 SATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLAEPNLTAMSGETASFLAGGEFPIP 251 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352 + + G TSV +GV L F PTVL I + ++ EVSE + VN +P+ Sbjct: 252 VLQEN-GQTSVEFRRFGVSLEFVPTVLDNNLINIHVKPEVSELSLQGAVQVNGIAVPAVS 310 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ADT VEL SG + V+ GL++ ++ P L +IPILGALFR+S F +EE+E+ I Sbjct: 311 TRRADTVVELASGQSFVIGGLIRRNVNNDISAFPWLGRIPILGALFRSSSFQKEESELVI 370 Query: 413 AATPFLVKPVAMRD-LSRPDDHYS 435 TP++V+P + + +S P D + Sbjct: 371 LVTPYIVRPGSNPNQMSAPTDRMA 394 >gi|167841781|ref|ZP_02468465.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 433 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 125/395 (31%), Positives = 206/395 (52%), Gaps = 36/395 (9%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++++P V V+DP ADV V +P+ +++ GK G + +G + + +L ++++ Sbjct: 20 MVKLPEPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTILRETVVVDV 79 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L ++ + ++++ G V + D+ + + +L Q Sbjct: 80 DTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVAQTLKPYLRQQ------- 132 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++N L +A QV L+V I EV R+I +Q+G S G+S F G+ Sbjct: 133 ---ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 186 Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S G FSV G R+S + VL AL++ I LAEP LTAISGQ+AS Sbjct: 187 LFDTASKAFDLSPSGAFSVLGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 246 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344 F +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVSE P V Sbjct: 247 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 306 Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+LG LF + Sbjct: 307 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 366 Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430 + ++TE+ + TP++V+P A+ D++RP Sbjct: 367 YLNDKTEVVVIVTPYIVQPANPGELHDALDDVTRP 401 >gi|330985203|gb|EGH83306.1| type III secretion component [Pseudomonas syringae pv. lachrymans str. M301315] Length = 429 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 134/410 (32%), Positives = 207/410 (50%), Gaps = 24/410 (5%) Query: 44 IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 I KG K ++IG +V+ P+D V+V++P AD+ V SP +Y+FGK GQ ++ Sbjct: 20 IAKGAKGTVDLAIGEGRVLHFSAPLD--SVMVAEPGIADLQVVSPGVIYVFGKAAGQTSL 77 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I + +G++ L + + A + L+ S R+ V+ G ++QD Sbjct: 78 IALDSEGRETAALSLAVSSSTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 134 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A +L+ LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 135 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNA 187 Query: 220 ---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G+ S + A S + + +L AL+ + LAEP Sbjct: 188 LFNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPN 247 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 +TA++GQ+ASF +GG+ + V + + YGV L F+PT+L GRI L+++ EV Sbjct: 248 ITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEV 306 Query: 337 SE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 S + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +P Sbjct: 307 SSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMP 366 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 ILG LFR+ RF R ETE+ I TP+LV+PV R ++ P D A A Sbjct: 367 ILGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 416 >gi|126737254|ref|ZP_01752989.1| bacterial type II/III secretion system protein [Roseobacter sp. SK209-2-6] gi|126721839|gb|EBA18542.1| bacterial type II/III secretion system protein [Roseobacter sp. SK209-2-6] Length = 446 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 233/462 (50%), Gaps = 35/462 (7%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 LP + A A + + V+ G + + +N+ I+++ ++ +++P AD+ S R Sbjct: 3 LPVAEPAQANGLRV--VKQGTSITLDVPMNRAIVVESDAPFAELSIANPNIADISSLSDR 60 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 T+Y+ GK+ G + L+ GK + N+++ + D++ + LR+ + I V +D + Sbjct: 61 TIYVLGKSPGLTTLTLLDGAGKLITNVNVRVAADVSEFKERLRQILPGEKIEVRTANDGI 120 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 VL G V + QRA++L+E + + ++V NL+++ G QV LKV AE+ Sbjct: 121 VLSGTVSSSARLQRALDLAERY------------APERVSNLMSVGGVQQVMLKVRFAEM 168 Query: 206 RRDILK----QIGFQHSITGSSSGPSKSFAADFGGKF----VSEGGDFSVKGVLDRFSFE 257 R + K + F +S G G + ++ G V++G + +V SF Sbjct: 169 ERSVSKTLSSSLAFGNS--GDVIGETGTWLDGNNGLGNPVQVTQGTEGAVAISFGAGSFR 226 Query: 258 --TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 +L ALE+ +RTLAEP L+A+SGQ ASF +GG++ V + + +G+ Sbjct: 227 VGVLLEALEQKGIVRTLAEPNLSALSGQEASFLAGGEYPIPVVDAD--GIGIEYKPFGIE 284 Query: 316 LHFTPTVLSPGRIGLRIQTEVS--EPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLA 371 L F P V+ I L ++ VS +P V N + + R TTVEL G + +A Sbjct: 285 LDFIPRVVDQDVINLELEAVVSAIDPTTTVVQNGLTINGFTRRATSTTVELRDGESFAIA 344 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL++D+ +P + IPI+GALFR++ + RE+TE+ I + LV P L+ P Sbjct: 345 GLVQDEFTDSNGQVPWVGDIPIIGALFRSASYQREQTELVIIVSAHLVTPTRGEALTLPT 404 Query: 432 DHYSVEDDAKAFFFNRV-NKIYGPKEASEVEGQNYKGAIGFI 472 D + + F F R + GP +EV GQ+Y G+ G++ Sbjct: 405 DRVKPPSENELFLFGRTEHNRSGP--VNEVAGQDYNGSYGYV 444 >gi|85705151|ref|ZP_01036251.1| bacterial type II/III secretion system protein [Roseovarius sp. 217] gi|85670473|gb|EAQ25334.1| bacterial type II/III secretion system protein [Roseovarius sp. 217] Length = 428 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 129/441 (29%), Positives = 215/441 (48%), Gaps = 37/441 (8%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 +N+ ++++ ++ +++P AD S RT+Y+ GK G+ + L G+ + N+D Sbjct: 1 MNRAVVVESDSPFAELSIANPAIADFSTLSDRTIYVLGKTPGRTTLSLFDGAGQLITNID 60 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 + + DI + L++ + I V +D +V+ G V + QRA++L+E + Sbjct: 61 VHVSTDIEEFKERLKQILPGEPIEVRSANDGIVISGTVSSSSRMQRALDLAERY------ 114 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 + ++V NL++++G+ QV LKV AE++R + K + SI + F Sbjct: 115 ------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKALSTSLSIDARGANQVGVFGGT 168 Query: 234 -----FGGKFVSEGGDFSVKGVLDR-----FSFET-------VLHALERATAIRTLAEPT 276 GG S G ++ G D F F+ +L ALE +RTLAEP Sbjct: 169 NTTNTLGGVLGSTAG--TIPGANDNNGVFNFGFDVGSVEVGILLEALETKGVVRTLAEPN 226 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 LTA+SGQ A F +GG+ V+ T+V +GV L+F P V+ G I L + V Sbjct: 227 LTALSGQEAKFLAGGEFPVP-VAQDNDTTTVEFKPFGVELNFVPRVVDDGIINLEMAAAV 285 Query: 337 SE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 S + + +P++R R TTV L G + +AGLL+DD + +P L +P Sbjct: 286 SSIDTSNSLVSDGFSIPAFRRRDTSTTVALRDGESFAIAGLLQDDFRDNAGQVPWLGDVP 345 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV-NKI 451 +LGALFR++ + R +TE+ I + LV P L+ P D + + F RV N + Sbjct: 346 VLGALFRSADYQRSQTELVIIVSAHLVSPSRGEALALPTDRVKLPSEKDLFLNGRVANGV 405 Query: 452 YGPKEASEVEGQNYKGAIGFI 472 EV Q++ G+ G++ Sbjct: 406 SDRGAVGEVAKQDFTGSYGYV 426 >gi|91788411|ref|YP_549363.1| type II and III secretion system protein [Polaromonas sp. JS666] gi|91697636|gb|ABE44465.1| type II and III secretion system protein [Polaromonas sp. JS666] Length = 514 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 146/488 (29%), Positives = 247/488 (50%), Gaps = 42/488 (8%) Query: 16 LFSSNPSVAKLPPIKEANAA----VINISDVEI-GK---GKKISIGLNKVIILQVPVDVQ 67 L + NP A P K+A A V+ + I GK +I++ K ++++P Sbjct: 40 LAAKNPPTATSGPGKQAATAQPKAVVTQARAPITGKVELAPQINLSEGKSTLMRLPSPAT 99 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 + V D DV++ +P +Y+ GK+VG N+IL + +DI + D L L Sbjct: 100 RLSVGDARIVDVILLNPSELYMLGKSVGSTNLILWNKANDATI-IDIAVGMDTVALRSRL 158 Query: 128 RR-FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS------ 180 + F ++ ++++ +DT++L GMV + + + + ++ ++ +S R+ A + Sbjct: 159 EQMFASEKDLKITTAADTLILSGMVSDVVKADQILSVANAYVQRSSRSGQAGGASGGSAG 218 Query: 181 -----SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 S KV+N+L+IA QV L+V +AEV + + Q+G SI G + + S+ Sbjct: 219 GQQSDSAKVVNMLSIAAPQQVMLEVQVAEVSKTLADQLG--ASIGGRKT--TGSWTYTLL 274 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 ++ G S+ V + +F T+ A + ++ LAEPT+ AISGQ ASF +GG+ Sbjct: 275 SNLLT-GAASSIGAVKNSGNFLTI-DAQKGDGLLKILAEPTIMAISGQEASFLAGGKIFI 332 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----- 347 S + G ++ ++GV + F PTVL GRI L++ EVS+ +G++A Sbjct: 333 PVKSGNNGEIALEEKEFGVSVKFLPTVLEGGRINLKVAPEVSDLNRQGVGISATGSSTTA 392 Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +PS+ R+A TTV+L G + + GL+K+++ PLL ++P+LGALFR+S F + Sbjct: 393 ILPSFTTRRASTTVQLFDGQSFAIGGLIKNNVTANINAFPLLGEVPVLGALFRSSDFQTD 452 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 +E+ TP LVKP+ D P D Y ++ FF + P E ++ G Sbjct: 453 RSELVFIVTPHLVKPLPA-DYKLPTDPY-IQPSRSEFFLGGKMEGAAPPEGNKPAGP--- 507 Query: 467 GAIGFIYK 474 A GF K Sbjct: 508 -ATGFEVK 514 >gi|83943939|ref|ZP_00956396.1| bacterial type II/III secretion system protein [Sulfitobacter sp. EE-36] gi|83954512|ref|ZP_00963223.1| bacterial type II/III secretion system protein [Sulfitobacter sp. NAS-14.1] gi|83840796|gb|EAP79967.1| bacterial type II/III secretion system protein [Sulfitobacter sp. NAS-14.1] gi|83845186|gb|EAP83066.1| bacterial type II/III secretion system protein [Sulfitobacter sp. EE-36] Length = 479 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 127/458 (27%), Positives = 230/458 (50%), Gaps = 44/458 (9%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V+ G + + + +N+ ++++ + ++ +++P AD+ S RT+Y+ GK+ G + L Sbjct: 37 VKKGTNRVLEVPMNRAVVVESDIPFAELSIANPGIADISSLSDRTIYVLGKSPGLTTLTL 96 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + G+ + N+D+ + D++ + LR+ + I V +D +VL G+V + Q QRA+ Sbjct: 97 LDAAGQLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGIVLSGIVSSTQRLQRAL 156 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +L+E + + ++V NL+++ G QV +KV AE+ R + K + ++ G Sbjct: 157 DLAERY------------APERVSNLMSVGGIQQVMMKVRFAEMSRSVSKSLSASLALNG 204 Query: 222 ------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET-------VLHA 262 +++ + + A GG + + + VL F F +L A Sbjct: 205 LVGNDLAINGGTNTTNTAGAIANSLGG--TTPASNSNAGAVL--FGFNAGSTQVGLLLEA 260 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE+ A+R LAEP L A+SGQ A+F +GG++ V+ + SV +GV + F P V Sbjct: 261 LEQKGAVRFLAEPNLVALSGQEATFLAGGEYPVP-VAQTGDQISVQYKPFGVEMSFIPRV 319 Query: 323 LSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + I L ++ V S V N D+ ++ R+ TTVE+ G + +AGLL DD Sbjct: 320 VDKDLINLELKAAVSAIDASNSVSLGNGFDISAFTRRETSTTVEMRDGESFAIAGLLTDD 379 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +P + +P+LGALFR++ + R ++E+ I T LV P L+ P D Sbjct: 380 FTDNSSQLPWIGDVPVLGALFRSANYQRSQSELVIIITAHLVTPTRGEALALPTDRIKPP 439 Query: 438 DDAKAFFFNRVNK-IYGPKE--ASEVEGQNYKGAIGFI 472 +++ F R +K P + A EV Q++ G+ G++ Sbjct: 440 TESELFLSGRTSKGSTAPTKGAAGEVAKQDFSGSYGYV 477 >gi|257141104|ref|ZP_05589366.1| type II and III secretion system protein [Burkholderia thailandensis E264] Length = 826 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 130/421 (30%), Positives = 219/421 (52%), Gaps = 31/421 (7%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 +G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ G Sbjct: 96 MGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQG 155 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 156 KSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVA 214 Query: 163 LSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + ++ V+N+L + QV L+V +AEV + ++ Q+G ++ Sbjct: 215 IAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNL 274 Query: 220 TGSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G + + G VS+ + G +D A ++ LAE Sbjct: 275 QGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSID---------AQNTDQPVKILAE 325 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLR 331 P L ISGQ A+F +GG+ SS TS T ++GV L FTPTVLS GRI L+ Sbjct: 326 PRLVTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLK 385 Query: 332 IQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + EVSE + N G +P R+A TTV++ G T + GL+KD+ Q Sbjct: 386 VAPEVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTL 445 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + +P + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A Sbjct: 446 KALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADV 505 Query: 443 F 443 + Sbjct: 506 Y 506 >gi|94309592|ref|YP_582802.1| type II and III secretion system protein [Cupriavidus metallidurans CH34] gi|93353444|gb|ABF07533.1| Flp pilus assembly protein secretin CpaC [Cupriavidus metallidurans CH34] Length = 620 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 126/419 (30%), Positives = 225/419 (53%), Gaps = 34/419 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + IG +++I L P V++ + +P + SP+T+Y+ G++VG N+I+ G G Sbjct: 94 VPIGKSQLIPL--PEPVRNRTLGNPNVVQATMVSPQTLYVLGRSVGTTNMIVQGRSGGCS 151 Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +++++ D L+ +L + + +S IRV +D +VL G V + Q + +A+++++ + Sbjct: 152 I-INVVVNADSNGLQTSLAQLLPGESGIRVMTAADNLVLTGSVSSSQAALQAMDIAQAY- 209 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 + + + AN V+N++++ QV L+V +AEV + +L Q+G +I G Sbjct: 210 ANAAQGDGANGKKGGVLNMMSVDTPQQVMLEVKVAEVSKTLLNQLGSAVNIQGG------ 263 Query: 229 SFAADFGGKFV-----SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 F + GG + G F K + F + A + + ++ LAEP L ISGQ Sbjct: 264 -FGSWTGGVISNLLTGAAAGIFGSKA--NNKPFNLAIDAQKNDSLVKVLAEPNLVTISGQ 320 Query: 284 SASFTSGGQHLYKTVSSST---GATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSE 338 ASF +GG+ +Y V+ S GA+++T + +GV L FTPTVL+ GRI L++ EVSE Sbjct: 321 EASFLAGGK-IYIPVAQSNALGGASTITLQEEEFGVGLKFTPTVLANGRIHLKVSPEVSE 379 Query: 339 --PVIGVNAGD-------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 P +G +P R+A TTV++ G + + GLL+D + + +P Sbjct: 380 LSPTGATVSGSTLTGQTILPLITTRRASTTVQMRDGESFAIGGLLQDSARGSLKALPGAG 439 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++P+LG LFR+++F ++ TE+ TP LVKP+ ++ P D ++ D +F + Sbjct: 440 EVPVLGTLFRSTQFQQDLTELVFIITPHLVKPMQTQNYPLPTDGFTTPDPLSLYFMGNM 498 >gi|149200847|ref|ZP_01877822.1| bacterial type II/III secretion system protein [Roseovarius sp. TM1035] gi|149145180|gb|EDM33206.1| bacterial type II/III secretion system protein [Roseovarius sp. TM1035] Length = 472 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 130/452 (28%), Positives = 217/452 (48%), Gaps = 35/452 (7%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V G +S+ +N+ ++++ ++ +++P AD S RT+Y+ GK G+ + L Sbjct: 33 VRNGTSSALSVAMNRAVVVESDSPFAELSIANPAIADFSTLSERTIYVLGKTPGRTTLSL 92 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 GK + N+D+ + DI + L++ + I V +D +V+ G V + QRA+ Sbjct: 93 FDGLGKLITNIDVHVSTDIEEFKERLKQILPGEPIEVRSANDGIVISGTVSSTSRMQRAL 152 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-- 219 +L+E + + ++V NL++++G+ QV LKV AE++R + K + SI Sbjct: 153 DLAERY------------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKALSSSLSIDA 200 Query: 220 --------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 T + G + A G + F+ + +L ALE Sbjct: 201 RGANSVGVIGGTNTTNTQGGVLGTLAGAIPGTNENNAA-FAFGFDVGSVEVGILLEALET 259 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 +RTLAEP LTA+SGQ A F +GG+ V+ TS+ +GV L+F P V+ Sbjct: 260 KGVVRTLAEPNLTALSGQEAKFLAGGEFPVP-VAQDNDTTSIEFKPFGVELNFVPRVVDD 318 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 G I L + VS + N +P++R R TTV L G + +AGLL+DD + Sbjct: 319 GIINLEMAAAVSSIDTANSLVSNGFAIPAFRRRDTSTTVALRDGESFAIAGLLQDDFRDN 378 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P L +P+LGALFR++ + R +TE+ I + LV P L+ P D + + Sbjct: 379 AGQVPWLGDVPVLGALFRSADYQRSQTELVIIVSAHLVSPSRGEALALPTDRVKLPSEKD 438 Query: 442 AFFFNRVNKIYGPK-EASEVEGQNYKGAIGFI 472 F RV + K EV Q++ G+ G++ Sbjct: 439 LFLNGRVARGVSDKGPVGEVAKQDFTGSYGYV 470 >gi|260431084|ref|ZP_05785055.1| bacterial type II/III secretion system protein [Silicibacter lacuscaerulensis ITI-1157] gi|260414912|gb|EEX08171.1| bacterial type II/III secretion system protein [Silicibacter lacuscaerulensis ITI-1157] Length = 452 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 132/461 (28%), Positives = 214/461 (46%), Gaps = 49/461 (10%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 N+ V+ G + + + +N+ I+++ ++ +++ AD+ S RT+Y+ GK G Sbjct: 13 NLRVVKKGTAETLDVPMNRAIVVESETPFAELSIANAGIADISSLSDRTIYVLGKAPGLT 72 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 + L G + N+ + + D+ + LR+ + + I V +D +VL G V + Sbjct: 73 TLTLFDGAGNLIANVRVRVAPDVTEFKERLRQILPNERIEVRTANDGIVLSGTVSSSAKL 132 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 RA+EL+E + + ++V NL+N+ G QV LKV AE+ R + K + Sbjct: 133 ARALELAERY------------APERVSNLMNVGGVQQVMLKVRFAEMNRSVAKSLSASL 180 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR-------------FSF-------E 257 GS D G S FS+ L F F Sbjct: 181 GFGGS----------DVTGGINSLNNSFSLSNALGNNIPVSQSNTGAILFGFGAGSTQVR 230 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 +L ALE R+LAEP L+A+SGQ A+F +GG+ + V G ++ +GV + Sbjct: 231 LLLEALEAKGLARSLAEPNLSALSGQEATFLAGGE-VPIPVPQDDGVVAIEYKSFGVEID 289 Query: 318 FTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 F P V+ I L + VS +N +PS+ R+ TTVEL G + +AGL Sbjct: 290 FIPRVVDGDLINLEMAASVSAIDTSSDFTINGDSVPSFVTRQTSTTVELRDGESFAIAGL 349 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 ++DD L IP L +P+LGALFR++ + RE++E+ I T LV P L+ P D Sbjct: 350 IQDDFTDLSNQIPWLGDVPVLGALFRSAEYQREQSELVIIITAHLVSPTRGEALALPTDR 409 Query: 434 YSVEDDAKAFFFNRVNKI--YGPKEASEVEGQNYKGAIGFI 472 + F RV++ G ASEV Q++ + G++ Sbjct: 410 VKPPSEFDLFLNGRVSRTERAGNGAASEVANQDFGSSYGYV 450 >gi|167620125|ref|ZP_02388756.1| type II/III secretion system protein [Burkholderia thailandensis Bt4] Length = 427 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 125/395 (31%), Positives = 205/395 (51%), Gaps = 36/395 (9%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++++P V V+DP ADV V +P+ +++ GK G + +G + + +L +++ Sbjct: 14 MVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANDRTILRETVVVNV 73 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L ++ + ++++ G V + D+ V+ + +L Q Sbjct: 74 DTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 126 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++N L +A QV L+V I EV R+I +Q+G S G+S F G+ Sbjct: 127 ---ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 180 Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S G FSV G +S + VL AL++ I LAEP LTAISGQ+AS Sbjct: 181 LFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 240 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344 F +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVSE P V Sbjct: 241 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 300 Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+LG LF + Sbjct: 301 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 360 Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430 + ++TE+ + TP++V+P A+ D++RP Sbjct: 361 YLNDKTEVVVIVTPYIVQPANPGELRDALDDITRP 395 >gi|83719085|ref|YP_442980.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|257139204|ref|ZP_05587466.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|83652910|gb|ABC36973.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 492 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 125/395 (31%), Positives = 205/395 (51%), Gaps = 36/395 (9%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++++P V V+DP ADV V +P+ +++ GK G + +G + + +L +++ Sbjct: 79 MVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANDRTILRETVVVNV 138 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L ++ + ++++ G V + D+ V+ + +L Q Sbjct: 139 DTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 191 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++N L +A QV L+V I EV R+I +Q+G S G+S F G+ Sbjct: 192 ---ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 245 Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S G FSV G +S + VL AL++ I LAEP LTAISGQ+AS Sbjct: 246 LFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 305 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344 F +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVSE P V Sbjct: 306 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 365 Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+LG LF + Sbjct: 366 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 425 Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430 + ++TE+ + TP++V+P A+ D++RP Sbjct: 426 YLNDKTEVVVIVTPYIVQPANPGELRDALDDITRP 460 >gi|167841773|ref|ZP_02468457.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 484 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 132/422 (31%), Positives = 223/422 (52%), Gaps = 26/422 (6%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 16 EMRESTNVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 75 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 76 GKSGACQI-IDVAVGADADGLQTSLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 134 Query: 162 ELSETFLSQSGRNQYAN--------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 +++ + ++ N SS V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 135 AIAKAYSDRTNAGAAGNGNGNGGGGSSRADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM 194 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G +I G S+ ++ G V ++ + A + ++ LA Sbjct: 195 GSAVNIQGGFG----SWTGALMTSLLTGVGSGIVASKSNKLPLSGAIDAQDTDQPVKILA 250 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGL 330 EP L ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L Sbjct: 251 EPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISL 310 Query: 331 RIQTEVSE-PVIGV-----NAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 ++ EVSE GV N G+ +P R+A TTV++ G T + GL+KD+ Q Sbjct: 311 KVAPEVSELSPTGVTLSASNVGNVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGT 370 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 + +P + ++P+LGALFR++ F ++ TE+ TP LVKP+ D+ P D ++ ++A Sbjct: 371 LKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLDTADVPLPTDSFTKPNEAD 430 Query: 442 AF 443 + Sbjct: 431 VY 432 >gi|167581961|ref|ZP_02374835.1| type II/III secretion system protein [Burkholderia thailandensis TXDOH] Length = 441 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 125/395 (31%), Positives = 205/395 (51%), Gaps = 36/395 (9%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++++P V V+DP ADV V +P+ +++ GK G + +G + + +L +++ Sbjct: 28 MVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANDRTILRETVVVNV 87 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L ++ + ++++ G V + D+ V+ + +L Q Sbjct: 88 DTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLRQQ------- 140 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++N L +A QV L+V I EV R+I +Q+G S G+S F G+ Sbjct: 141 ---ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASG---NFVGGLFNGRT 194 Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S G FSV G +S + VL AL++ I LAEP LTAISGQ+AS Sbjct: 195 LFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPNLTAISGQTAS 254 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344 F +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVSE P V Sbjct: 255 FLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVT 314 Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+LG LF + Sbjct: 315 TGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKLFSSRN 374 Query: 403 FNREETEIFIAATPFLVKPV-------AMRDLSRP 430 + ++TE+ + TP++V+P A+ D++RP Sbjct: 375 YLNDKTEVVVIVTPYIVQPANPGELRDALDDITRP 409 >gi|82703477|ref|YP_413043.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411542|gb|ABB75651.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 574 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 135/437 (30%), Positives = 222/437 (50%), Gaps = 57/437 (13%) Query: 55 NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQML 110 K +L++P V + V +P ADV + SP +Y+ GK++G NVIL G Q Sbjct: 95 GKSALLRLPAPVTRISVGNPDVADVTLISPGEIYVLGKSIGTTNVILWTRGGLAGSSQTA 154 Query: 111 NLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 +++ + D A L+ LR + +++I+V D++VL G V + RAV L++ ++ Sbjct: 155 VINVTVILDAAALQAKLRELMPGETDIKVTAAGDSLVLSGTVSDTLKADRAVALADAYVR 214 Query: 170 QSG-------------------------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 + + S +V+NLL + QV L+V +AE Sbjct: 215 AAAGGQGGQRGGKQGGDASGGQGGGDEPKGAGQGLGSVQVVNLLQVGSNQQVMLEVKVAE 274 Query: 205 VRRDILKQIGF--QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---VLDRFSFETV 259 + R + +++GF Q + + S ++ GG + G F +G + D F + Sbjct: 275 INRKVAERLGFDFQRAARKAGSAWTQIMTGIIGG---APGMLFQSRGTPEIGDAF----L 327 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + A ++ LAEP + AISGQ ASF GG+ + + G ++ + +GV L FT Sbjct: 328 IDAEKKDELFHILAEPNIVAISGQEASFLVGGEVMIP-IPQYAGVITLQSRQFGVGLRFT 386 Query: 320 PTVLSPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIV 369 PTVL GRI L + EV+E V GV A +P++ R+ TTV+L G ++ Sbjct: 387 PTVLEEGRINLVVSPEVTELVKFDTIATTGLGGVLA--VPTFTTRRVSTTVQLRDGQSLA 444 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + GLL+D+I++ + P+L +IPILGALFR+S F +++TE+ + TP L+KP+ D + Sbjct: 445 IGGLLQDNIKETIKRFPVLGEIPILGALFRSSDFQKDKTELMVVVTPRLIKPL-QPDYAL 503 Query: 430 PDDHYSVEDDAKAFFFN 446 P D + V+ D F F+ Sbjct: 504 PTDAF-VQPDRPDFLFD 519 >gi|162147491|ref|YP_001601952.1| type II and III secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|209545598|ref|YP_002277827.1| type II and III secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786068|emb|CAP55650.1| type II and III secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533275|gb|ACI53212.1| type II and III secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 473 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 128/404 (31%), Positives = 207/404 (51%), Gaps = 33/404 (8%) Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 ++ V+DP +V SP +M++FG GQ VI G + +++ ++ L Sbjct: 62 NIFVADPKVVEVRAASPDSMFVFGVGAGQTTVIATSRSGGVVARYTVVVLPS-SYRASAL 120 Query: 128 RRFIADSNIRVEM---VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 RR + N RV + ++ + G + + +++A+E + + + GR V Sbjct: 121 RRDVGQQNPRVRIGTGADGSIGIEGTETSSESAEQALEGATALVGKGGR----------V 170 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + ++ G QV LKV I E+ R +++++G + ++ G + + + + Sbjct: 171 GDYASVPGSIQVNLKVRIVEMSRSLVRELGVEWQSV-NALGTAAAIGISTSNPLAALTTE 229 Query: 245 FSVKGVLDRFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 S L RFS ETV+ AL + I +LAEP LT +SGQ+ASF GG++ Sbjct: 230 QSAFNFLSRFSAAGRPVTVETVIDALSQDGLIHSLAEPNLTTVSGQAASFIVGGEYPIP- 288 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGD----MP 349 VSS +V YG+ L F PTVL+ GRI L ++ EVS + + ++ + +P Sbjct: 289 VSSYNNNINVQYKQYGISLAFVPTVLADGRISLHVRPEVSALSTQGAVTLSEANGNLQIP 348 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + VR+ADTTVEL SG + +AGL++D G+P L IP+LGALF++S F + E+E Sbjct: 349 ALTVRRADTTVELGSGQSFAIAGLMQDSTNMQGLGLPFLGDIPVLGALFKSSSFQKNESE 408 Query: 410 IFIAATPFLVKPVAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIY 452 + I TP+LV+PV L PDD+++ D F R N IY Sbjct: 409 LVIVVTPYLVRPVDNESMLHSPDDNWAPPGDLDRIFLMRQN-IY 451 >gi|194288836|ref|YP_002004743.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG 19424] gi|193222671|emb|CAQ68674.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG 19424] Length = 621 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 129/418 (30%), Positives = 226/418 (54%), Gaps = 33/418 (7%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + +G +++I LQ PV ++ + +P+ + SP+T+Y+ G+ VG N+I+ G G Sbjct: 95 VPVGKSQLITLQEPV--RNRTLGNPSVVQATMVSPQTLYVLGRTVGTTNMIVQGRSGSCS 152 Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +++++ D L+ +L + + + IRV +D +VL G V Q +Q+A+E+++ + Sbjct: 153 I-INVVVNADSGGLQTSLGQLLPGEPGIRVTTAADNLVLTGSVTNAQAAQQAMEIAQAYA 211 Query: 169 SQSGRNQYANSSSK-KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + + Q + + K V+N++++ QV L+V +AEV + +L Q+G ++ G Sbjct: 212 NAA---QGGDGNKKGSVLNMMSVDTPQQVMLEVKVAEVSKTLLNQLGSAVNLQG------ 262 Query: 228 KSFAADFGGKFVS--EGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 F + GG S G +V G + FE L A + + ++ LAEP L ISGQ Sbjct: 263 -GFGSWSGGLVTSLLTGASAAVFGSKANNRPFEFALDAQKNDSLVKILAEPNLVTISGQE 321 Query: 285 ASFTSGGQHLYKTVSSS---TGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 ASF +GG+ +Y V+ + GA +VT ++GV L FTPTVL+ GRI L++ EVSE Sbjct: 322 ASFLAGGK-IYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANGRIHLKVAPEVSEL 380 Query: 339 -PV-----IGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 P G AG +P R+A TTV++ G + + GLL D + + +P + Sbjct: 381 SPTGATIRGGTLAGQTILPVITTRRASTTVQMRDGESFAIGGLLTDSARGSLKALPGAGE 440 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 +P+LG LFR++++ ++ +E+ TP LVKP+ + P D +S + +F + Sbjct: 441 VPVLGTLFRSTQYQQDLSELVFIITPRLVKPMQTNNYPLPTDSFSAPNPLSLYFMGNM 498 >gi|187927687|ref|YP_001898174.1| type II and III secretion system protein [Ralstonia pickettii 12J] gi|187724577|gb|ACD25742.1| type II and III secretion system protein [Ralstonia pickettii 12J] Length = 663 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 135/462 (29%), Positives = 234/462 (50%), Gaps = 47/462 (10%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 S NP++A P A+ N + G+ + + + K ++ +P V++ + +P Sbjct: 75 MTISMNPALATAP---VADVRGPNCTGAVRGE-SSVVVPVGKSSLISLPEPVRNRTLGNP 130 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + SP++MYL G++VG N+I+ G G + +++++ D L+ +L + + Sbjct: 131 AVVQATMVSPQSMYLLGRSVGTTNMIVQGRSGACSI-VNVVVNADAGGLQTSLAQLMPGE 189 Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------------GRNQYANSSS 181 N IRV +D++VL G V + Q +Q+A+E++ + + + + Sbjct: 190 NKIRVMTAADSLVLAGNVSSAQAAQQAMEIAHAYAASAQSGADKGGGAAGALGGGGAAGG 249 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 V+N++ + QV L+V +AEV + +L Q+G ++ G F + GG S Sbjct: 250 ANVINMMIVDTPQQVMLEVKVAEVSKTLLNQLGSALNVQGG-------FGSWSGGLLTSL 302 Query: 241 ----EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G F+ K + F+ L A + + ++ LAEP L +SGQ ASF +GG+ +Y Sbjct: 303 LTGSSTGFFANKA--NNRPFQVELDAQKNDSLVKILAEPNLVTLSGQEASFLAGGK-IYI 359 Query: 297 TV---SSSTGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNA 345 V SSS GA ++T + YGV L FTPTV++ GRI L++ EVSE V G N Sbjct: 360 PVAQSSSSGGAPTITLQEEEYGVGLKFTPTVMANGRINLKVAPEVSELSPTGATVTGANT 419 Query: 346 GD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +P R+A TTV++ G + + GLL+D+ + + +P +IP+LG LFR+++ Sbjct: 420 NGQTILPLITTRRASTTVQMRDGESFAIGGLLQDNARGSLKALPGAGEIPVLGTLFRSTQ 479 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 F + TE+ I TP LV+P+ P D +S ++ + Sbjct: 480 FQHDLTELVIVITPRLVQPMQTASYPLPTDSFSTPNELAVYL 521 >gi|171320618|ref|ZP_02909638.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] gi|171094131|gb|EDT39218.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] Length = 460 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 139/453 (30%), Positives = 224/453 (49%), Gaps = 57/453 (12%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +SI K +L + + V+DP+ AD+ V SPRT+++FGK G +I +G + + + Sbjct: 36 LSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPI 95 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 L ++++ D A L+ L + V ++++ G V + D+ ++ +L+ Sbjct: 96 LRRTVIVQVDTASLQTVLDSRFPQLKLSVSGAPGSLMVSGKVPSAADADAVMQSLTPYLN 155 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 +K++N L ++ QV L+V + EV R++ +Q+G I SS G + + Sbjct: 156 DK----------EKIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLG----INWSSLGAAGN 201 Query: 230 FAADFGGKF--------------VSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLA 273 F GG F +S G +SV G R+S + VL AL++ I LA Sbjct: 202 F---IGGLFNGRTLMDPTTKLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLITMLA 258 Query: 274 EPTLTAISGQSASFTSGGQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 EP LTA+SGQ+ASF +GG+ S+TGA +V +GV L FTPTVL+ RI L+ Sbjct: 259 EPNLTAMSGQTASFLAGGEIPIPVAQAGSTTGAITVEFKPFGVSLDFTPTVLADNRISLK 318 Query: 332 IQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 ++ EVSE V+A + +P VR+ +TTVEL SG + + GLL+ Sbjct: 319 VRPEVSE----VDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTADTVS 374 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 IP L ++PI+G LF + F +TE+ + TP++V+P L + D + F Sbjct: 375 QIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSDLEF 434 Query: 444 FFNR---VNKIYGPKEASEVEGQNYKGAIGFIY 473 R ++ + G E GA GF+Y Sbjct: 435 AVQRNLGLDLLSG-------ETPRLVGAAGFVY 460 >gi|167851182|ref|ZP_02476690.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei B7210] Length = 449 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 126/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K ++L + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 15 EMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 74 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 75 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 133 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 134 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 193 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 194 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 249 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 250 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 309 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 310 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 369 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 370 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 425 >gi|170703887|ref|ZP_02894570.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] gi|170131202|gb|EDS99846.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] Length = 460 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 138/456 (30%), Positives = 225/456 (49%), Gaps = 57/456 (12%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +SI K +L + + V+DP+ AD+ V SPRT+++FGK G +I +G + Sbjct: 33 GAPLSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANH 92 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +L ++++ D A L+ L + V ++++ G V + D+ ++ Sbjct: 93 RPILRRTVIVQVDTASLQTVLDSRFPQLKLAVSGAPGSLMVSGKVPSAADADAVMQSLTP 152 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +L+ ++++N L ++ QV L+V + EV R++ +Q+G I SS G Sbjct: 153 YLNDK----------ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLG----INWSSLGA 198 Query: 227 SKSFAADFGGKF--------------VSEGGDFSVKGVL--DRFSFETVLHALERATAIR 270 + +F GG F +S G +SV G R+S + VL AL++ I Sbjct: 199 AGNF---IGGLFNGRTLMDPTTRLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLIT 255 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSS--STGATSVTTHDYGVVLHFTPTVLSPGRI 328 LAEP LTA+SGQ+ASF +GG+ + +TGA +V +GV L FTPTVL+ RI Sbjct: 256 MLAEPNLTAMSGQTASFLAGGEIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVLADNRI 315 Query: 329 GLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L+++ EVSE V+A + +P VR+ +TTVEL SG + + GLL+ Sbjct: 316 SLKVRPEVSE----VDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTAN 371 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L ++PI+G LF + F +TE+ + TP++V+P L + D + Sbjct: 372 TVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSD 431 Query: 441 KAFFFNR---VNKIYGPKEASEVEGQNYKGAIGFIY 473 F R ++ + G E GA GF+Y Sbjct: 432 LEFAVQRNLGLDLMSG-------ETPRPVGAAGFVY 460 >gi|163745846|ref|ZP_02153205.1| bacterial type II/III secretion system protein [Oceanibulbus indolifex HEL-45] gi|161380591|gb|EDQ05001.1| bacterial type II/III secretion system protein [Oceanibulbus indolifex HEL-45] Length = 478 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 131/458 (28%), Positives = 223/458 (48%), Gaps = 45/458 (9%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V+ G + + +N+ ++++ + ++ +++P AD+ S RT+Y+ GK+ G + L Sbjct: 37 VKRGTNSSLDVPMNRAVVVESDIPFAELSIANPGIADISSLSDRTIYVLGKSPGLTTLTL 96 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + G+ + N+D+ + D++ + LR+ + I V +D +VL G+V + Q QRA+ Sbjct: 97 LDAGGQLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGIVLSGIVSSTQRLQRAL 156 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT- 220 +L+E + + ++V NL+++ G QV +KV AE++R++ K +G +I Sbjct: 157 DLAERY------------APERVSNLMSVGGIQQVMMKVRFAEMQRNVSKSLGSSLAING 204 Query: 221 ----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET-------VLHAL 263 S+ S A+ GG S + + VL F F +L AL Sbjct: 205 AIGGTGINGGTGSTNSSGGVASSLGGTIPSS--NQNAGAVL--FGFNAGSTQVGILLEAL 260 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTV 322 E +R LAEP L A+SGQ A F +GG+ Y + TG T +V +GV L F P V Sbjct: 261 EEKGVVRFLAEPNLVALSGQEAKFLAGGE--YPVPVAQTGDTIAVEFKPFGVELAFIPRV 318 Query: 323 LSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + I L + V S + N ++ ++ R+ TTVE+ G + +AGLL DD Sbjct: 319 VDKDIINLEMNAAVSAIDGSNSIALGNGIEISAFTRRETSTTVEMRDGESFAIAGLLTDD 378 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +P + +P+LGALFR++ + R +TE+ I T LV P L P D Sbjct: 379 FTDSTRQLPWIGDVPVLGALFRSADYQRSQTELVIIVTAHLVTPTRSEALVLPTDRIKPP 438 Query: 438 DDAKAFFFNR-VNKIYGPKE--ASEVEGQNYKGAIGFI 472 + F R + P A EV Q+++G+ G++ Sbjct: 439 SEKDLFLHGRTADGTRTPTRGAAGEVAKQDFRGSYGYV 476 >gi|172062959|ref|YP_001810610.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] gi|171995476|gb|ACB66394.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] Length = 460 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 138/456 (30%), Positives = 225/456 (49%), Gaps = 57/456 (12%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +SI K +L + + V+DP+ AD+ V SPRT+++FGK G +I +G + Sbjct: 33 GAPLSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANH 92 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +L ++++ D A L+ L + V ++++ G V + D+ ++ Sbjct: 93 RPILRRTVIVQVDTASLQTVLDSRFPQLKLAVSGAPGSLMVSGKVPSAADADAVMQSLTP 152 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +L+ ++++N L ++ QV L+V + EV R++ +Q+G I SS G Sbjct: 153 YLNDK----------ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLG----INWSSLGA 198 Query: 227 SKSFAADFGGKF--------------VSEGGDFSVKGVL--DRFSFETVLHALERATAIR 270 + +F GG F +S G +SV G R+S + VL AL++ I Sbjct: 199 AGNF---IGGLFNGRTLMDPTTKLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLIT 255 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSS--STGATSVTTHDYGVVLHFTPTVLSPGRI 328 LAEP LTA+SGQ+ASF +GG+ + +TGA +V +GV L FTPTVL+ RI Sbjct: 256 MLAEPNLTAMSGQTASFLAGGEIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVLADNRI 315 Query: 329 GLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L+++ EVSE V+A + +P VR+ +TTVEL SG + + GLL+ Sbjct: 316 SLKVRPEVSE----VDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTAN 371 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L ++PI+G LF + F +TE+ + TP++V+P L + D + Sbjct: 372 TVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSD 431 Query: 441 KAFFFNR---VNKIYGPKEASEVEGQNYKGAIGFIY 473 F R ++ + G E GA GF+Y Sbjct: 432 LEFAVQRNLGLDLMSG-------ETPRPVGAAGFVY 460 >gi|153834055|ref|ZP_01986722.1| Flp pilus assembly protein [Vibrio harveyi HY01] gi|148869610|gb|EDL68600.1| Flp pilus assembly protein [Vibrio harveyi HY01] Length = 486 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 131/422 (31%), Positives = 215/422 (50%), Gaps = 23/422 (5%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 GK +S+ ++ L + + V + DP D++V ++L GK +G NV + G Sbjct: 26 GKVVSVAHHQSTQLMISGKAKKVTLGDPEVLDIIVLRSNELFLVGKKLGTTNVSVWDSRG 85 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + ++ + D+ L+ L +F+ D +I V + VVL G+V T Q+ AV+++ET Sbjct: 86 RLIEQFNVEVTHDLNTLKSKLYQFLPDESIEVHSAQEKVVLRGLVSTQQNMDTAVKIAET 145 Query: 167 FLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQHSI 219 F + ++ + S V+NLL+I G QVTL+VT+AEV+R ++++ FQ S Sbjct: 146 FAAGEAADEGEDDSKDDSMVINLLSIGGAQQVTLEVTVAEVQRTLVRRFDSNFHFFQKSG 205 Query: 220 TGSSSGPSKSFAADFGGKFVS--EGGDFSVKG-VLDRFSFETVLHALERATAI-RTLAEP 275 + + D G ++ DF G +D + T + R + + LAEP Sbjct: 206 DFTWGATTAGGGIDNIGPILNIPSVDDFGFLGSFIDSNTLFTFALDVARQNGVAKVLAEP 265 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +LTA+SG A F +GG+ V + G T + +YGV L F P +LS RI L++ Sbjct: 266 SLTALSGTQAEFVAGGEFPIP-VPNEDGIT-IDYKEYGVQLDFVPYILSDKRINLKMNVN 323 Query: 336 VSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 VSE V+ N + +P R A TT+EL G TI +AGLL ++ + + +GI Sbjct: 324 VSEIANSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLSENARNVADGI 383 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P S +P+LG LF++ F ETE+ I TP L P+ R ++ P D + +D + + Sbjct: 384 PGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGFVSPNDVEFYLL 443 Query: 446 NR 447 + Sbjct: 444 GK 445 >gi|167908129|ref|ZP_02495334.1| type II/III secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 460 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 126/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K ++L + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 20 EMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 79 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 80 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 138 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 139 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 198 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 199 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 254 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 255 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 314 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 315 SELSPTGVTLSAANMGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 374 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 375 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 430 >gi|134281876|ref|ZP_01768583.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|134246938|gb|EBA47025.1| type II/III secretion system protein [Burkholderia pseudomallei 305] Length = 685 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 126/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K ++L + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANMGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505 >gi|187919324|ref|YP_001888355.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] gi|187717762|gb|ACD18985.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] Length = 595 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 130/435 (29%), Positives = 219/435 (50%), Gaps = 47/435 (10%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 ++I + K ++ V V+ V +P ++ SP+T+YL G +VG N+I+ G G Sbjct: 115 VTIPVGKSTMVDVREPVKSRSVGNPAIVQAMLVSPQTLYLLGSDVGTTNMIVQGRSGSCT 174 Query: 110 LNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D L+ TL + + + I+V+ +DT+VL G V ++R +EL+ F+ Sbjct: 175 I-IDVSVGADPGGLQQTLAALMPEETGIQVKAAADTLVLTGTVSDAVKAERVLELARAFV 233 Query: 169 S------QSGRNQ--------------------YANSSSKKVMNLLNIAGEDQVTLKVTI 202 + Q G +S ++++N++++A QV L+V + Sbjct: 234 ARPTAALQGGAPMGSGPLPVGAAPRAMGMPAPTLGGASGERIINMMHVAAPQQVMLEVKV 293 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 AEV + ++ Q+G +I G S AD+ +S G + + A Sbjct: 294 AEVSKTLIDQLGVAANINGGIGSWSFGLLADY----LSGGLSALTASKANNSPLRAAIDA 349 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----THDYGVVLHF 318 + ++ LAEP L AISGQ ASF +GG+ +Y V S GA T YGV L F Sbjct: 350 QKTDQLVKILAEPNLMAISGQEASFLAGGK-VYIPVPQSNGANGTTIVLQEEQYGVGLTF 408 Query: 319 TPTVLSPGRIGLRIQTEVSE---PVIGVNAGD------MPSYRVRKADTTVELPSGGTIV 369 TPTVL GRI L++ EVSE + V+AG+ +P R+A TT+++ G + Sbjct: 409 TPTVLEGGRINLKVSPEVSELSSTGVVVSAGNSNNQTILPLITTRRASTTLQVFDGQSFA 468 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + GLLK +I +G+P +++P+LGALFR++ + +++TE+ TP L KP+ + Sbjct: 469 IGGLLKSNITGSIKGLPGAAELPVLGALFRSTSYEQDKTELVFVVTPRLAKPLP-QHYPL 527 Query: 430 PDDHYSVEDDAKAFF 444 P DH+ +A + Sbjct: 528 PTDHFGDASEANVYL 542 >gi|261820214|ref|YP_003258320.1| type II and III secretion system protein [Pectobacterium wasabiae WPP163] gi|261604227|gb|ACX86713.1| type II and III secretion system protein [Pectobacterium wasabiae WPP163] Length = 475 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 130/387 (33%), Positives = 207/387 (53%), Gaps = 29/387 (7%) Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 VLV+DP A + SP ++++ KNVG + + +GK + + ++ E D+ L ++ Sbjct: 72 VLVADPNIASFELPSPGNLFVYAKNVGTTTLYAMDENGKVINAIRLVSEHDLKALSERIK 131 Query: 129 RFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR---------NQYAN 178 R ++I++E + V++ G V T QD++R ++ +T+++ S +Q Sbjct: 132 REFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQTYINASSNGAQGGGGGGDQLPG 191 Query: 179 SS--SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 SS S KV+N L I Q+ ++V + EV R + ++GF + + S+ S + A G Sbjct: 192 SSETSGKVVNQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTG--SGNMTAGSGS 249 Query: 237 K---FVSEGGDFSV---KGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + F + G F+ G L+ R +L A+ + LAEP LTA+SG++A+F Sbjct: 250 RLNLFNATTGRFANPTDSGFLNFGRSRLGGLLTAMNQQGMATVLAEPNLTAMSGETAAFA 309 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVN 344 +GG+ V + + S+ YGV+L TPT+LS RI L I EVSE + + Sbjct: 310 AGGE--VPIVLITNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQLE 367 Query: 345 AGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 G +P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS IP+ G LF + Sbjct: 368 GGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSGIPMFGRLFESEST 427 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRP 430 N EETE+ I AT ++V+PV DL P Sbjct: 428 NHEETELVIIATAYVVEPVNAGDLQTP 454 >gi|167744175|ref|ZP_02416949.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 14] Length = 439 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 7 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 66 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 67 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 125 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 126 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 185 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 186 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 241 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 242 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 301 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 302 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 361 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 362 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 417 >gi|115358171|ref|YP_775309.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] gi|115283459|gb|ABI88975.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] Length = 460 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 139/461 (30%), Positives = 227/461 (49%), Gaps = 59/461 (12%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 VE G I+ G +++ L P + V+DP+ AD+ V SPRT+++FGK G +I Sbjct: 30 VEAGATLSIATGKGEMLSLSEPATA--MFVADPSIADIQVPSPRTVFVFGKKAGTTTLIA 87 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 +G + + +L ++++ D L+ L + V ++++ G V + D+ + Sbjct: 88 LGANHRPILRKTVIVQVDTVSLQAVLDSRFPQLKLSVSGAPGSLMVSGKVPSAADADAVM 147 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + +L+ ++++N L ++ QV L+V + EV R++ +Q+G I Sbjct: 148 QSLAPYLNDK----------ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLG----INW 193 Query: 222 SSSGPSKSFAADFGGKF--------------VSEGGDFSVKGVL--DRFSFETVLHALER 265 SS G + +F GG F +S G +SV G R+S + VL AL++ Sbjct: 194 SSLGAAGNF---IGGLFNGRTLMDPTNRLFNLSPTGAYSVLGGFHTGRWSIDVVLDALDQ 250 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--STGATSVTTHDYGVVLHFTPTVL 323 I LAEP LTA+SGQ+ASF +GG+ + +TGA +V +GV L FTPTVL Sbjct: 251 EGLITMLAEPNLTAMSGQTASFLAGGEIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVL 310 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLK 375 + RI L+++ EVSE V+A + +P VR+ +TTVEL SG + + GLL+ Sbjct: 311 ADNRISLKVRPEVSE----VDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQ 366 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 IP L ++PI+G LF + F +TE+ + TP++V+P L + D + Sbjct: 367 SQTANTVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVA 426 Query: 436 VEDDAKAFFFNR---VNKIYGPKEASEVEGQNYKGAIGFIY 473 F R ++ + G E GA GF+Y Sbjct: 427 RPSSDLEFAVQRNLGLDLMSG-------ETPRPVGAAGFVY 460 >gi|113866744|ref|YP_725233.1| flp pilus assembly protein secretin [Ralstonia eutropha H16] gi|113525520|emb|CAJ91865.1| flp pilus assembly protein secretin [Ralstonia eutropha H16] Length = 618 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 128/420 (30%), Positives = 224/420 (53%), Gaps = 37/420 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + +G +++I LQ PV ++ + +P + SP+T+Y+ G+ VG N+I+ G G Sbjct: 96 VPVGKSQLITLQEPV--RNRTLGNPNVVQATMVSPQTLYVLGRAVGTTNMIVQGRSGSCS 153 Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +++++ D L+ +L + + + IRV +D +VL G V Q +Q+A+E+++ + Sbjct: 154 I-INVVVNADAGGLQTSLGQLLPGEPGIRVMTAADNLVLTGSVTNAQTAQQAMEIAQAYA 212 Query: 169 SQSGRNQYANSSSKK-VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + + Q + + K V+N+L++ QV L+V +AEV + +L Q+G ++ G Sbjct: 213 NAA---QGGDGNKKGGVLNMLSVDTPQQVMLEVKVAEVSKTLLNQLGSTVNLQGG----- 264 Query: 228 KSFAADFGGKFVS-----EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 F + GG S F+ K + F+ + A + + ++ LAEP L ISG Sbjct: 265 --FGSWSGGLVTSLLTGASSAIFASKA--NNRPFDIAIDAQKNDSLVKILAEPNLVTISG 320 Query: 283 QSASFTSGGQHLYKTVSSST---GATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVS 337 Q ASF +GG+ +Y V+ + GA +VT + +GV L FTPTVL+ GRI L++ EVS Sbjct: 321 QEASFLAGGK-IYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANGRIHLKVSPEVS 379 Query: 338 E--PVI-----GVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E P G AG +P R+A TTV++ G + + GLL D + + +P Sbjct: 380 ELSPTGATIRGGTLAGQSILPVITTRRASTTVQMRDGESFAIGGLLTDSARGSLKALPGA 439 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++P+LG LFR++++ ++ TE+ TP LVKP+ + P D +S + +F + Sbjct: 440 GEVPVLGTLFRSTQYQQDLTELVFVITPRLVKPMQTSNYPLPTDSFSTPNPLSLYFMGNM 499 >gi|167821374|ref|ZP_02453054.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 91] Length = 494 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 64 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 123 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 124 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 182 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 183 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 242 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 243 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 298 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 299 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 358 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 359 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 418 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 419 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 474 >gi|254182583|ref|ZP_04889177.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|184213118|gb|EDU10161.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] Length = 690 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505 >gi|167829715|ref|ZP_02461186.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 9] Length = 510 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 73 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 132 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 133 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 191 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 192 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 251 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 252 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 307 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 308 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 367 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 368 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 427 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 428 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 483 >gi|167899813|ref|ZP_02487214.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 7894] Length = 473 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 37 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 96 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 97 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 155 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 156 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 215 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 216 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 271 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 272 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 331 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 332 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 391 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 392 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 447 >gi|167725247|ref|ZP_02408483.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei DM98] Length = 448 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 15 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 74 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 75 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 133 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 134 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 193 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 194 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 249 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 250 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 309 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 310 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 369 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 370 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 425 >gi|76819084|ref|YP_336469.1| phospholipid-binding domain-containing protein [Burkholderia pseudomallei 1710b] gi|254264517|ref|ZP_04955382.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] gi|76583557|gb|ABA53031.1| Putative phospholipid-binding domain family [Burkholderia pseudomallei 1710b] gi|254215519|gb|EET04904.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] Length = 690 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505 >gi|126456485|ref|YP_001076989.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|242311194|ref|ZP_04810211.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|126230253|gb|ABN93666.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|242134433|gb|EES20836.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] Length = 690 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505 >gi|237509564|ref|ZP_04522279.1| type II/III secretion system protein [Burkholderia pseudomallei MSHR346] gi|235001769|gb|EEP51193.1| type II/III secretion system protein [Burkholderia pseudomallei MSHR346] Length = 690 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505 >gi|167916476|ref|ZP_02503567.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 112] Length = 452 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 15 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 74 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 75 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 133 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 134 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 193 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 194 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 249 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 250 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 309 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 310 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 369 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 370 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 425 >gi|134291857|ref|YP_001115626.1| type II and III secretion system protein [Burkholderia vietnamiensis G4] gi|134135046|gb|ABO59371.1| type II and III secretion system protein [Burkholderia vietnamiensis G4] Length = 647 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 126/417 (30%), Positives = 219/417 (52%), Gaps = 18/417 (4%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ G G Sbjct: 100 VSVPLGKSLLVPMPEAVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQGKSGACR 159 Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D L+ +L + + A+ +I V + T+VL G V Q +Q+AV+++ + Sbjct: 160 V-IDVAVGADAGGLQASLLQLMPAERDIHVSTAAGTIVLAGTVSNSQAAQQAVQIARAYS 218 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 +G + + V+N+L++ QV L+V +AEV + ++ Q+G +I G S Sbjct: 219 DSAGGGEGGTAKGGGVLNMLSVTSPQQVMLEVKVAEVSKTLINQMGSALNIQGGFGSWSG 278 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + ++ S +V + F A ++ LAEP L ISGQ A+F Sbjct: 279 ALVSNLLAGVASA----AVFNKANNKPFSIAADAQNTDNLVKILAEPNLVTISGQEATFL 334 Query: 289 SGGQHLYKTV-SSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSE------P 339 +GG+ SS TG +++T ++GV L FTPTVL+ GRI L++ EVSE Sbjct: 335 AGGKIFIPVPQSSGTGVSTITLQQEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVT 394 Query: 340 VIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + N G +P R+A TTV++ G + + GL+KD+ + IP + ++P+LGA Sbjct: 395 LSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGVGEVPVLGA 454 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LFR++ F ++ TE+ TP LVKP+ D P D +S ++A + + +G Sbjct: 455 LFRSTSFQQDRTELIFLITPHLVKPLQSADQPMPTDSFSKPNEADVYATGNMEGRHG 511 >gi|53723207|ref|YP_112192.1| outer membrane protein [Burkholderia pseudomallei K96243] gi|52213621|emb|CAH39675.1| putative outer membrane protein [Burkholderia pseudomallei K96243] Length = 690 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505 >gi|217424167|ref|ZP_03455666.1| outer membrane protein [Burkholderia pseudomallei 576] gi|217392632|gb|EEC32655.1| outer membrane protein [Burkholderia pseudomallei 576] Length = 673 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 214 AIAKAYSNRTNAGAAGSGVGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505 >gi|218458719|ref|ZP_03498810.1| pilus assembly secretion protein [Rhizobium etli Kim 5] Length = 258 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 92/193 (47%), Positives = 132/193 (68%), Gaps = 17/193 (8%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 +++ +GLNK +++ +P D D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G+ Sbjct: 58 RRLKLGLNKAVVVDLPEDAHDILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQ 117 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 +++NLDI IERD++ LE LRRFI DS I VE+VSD +VL G VRT QD+ +A +L++ F Sbjct: 118 EIINLDIEIERDVSGLEANLRRFIPDSAINVEIVSDNIVLTGTVRTPQDATQAADLAQVF 177 Query: 168 L---SQSGRNQYANSS--------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 L + R + A+ + + +V+NLL I GEDQVTLKVTIAEVRR++L Sbjct: 178 LKGGEATTRTETASGTGGDSAVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVL 237 Query: 211 KQIGFQHSITGSS 223 KQ+GF + ++ SS Sbjct: 238 KQLGFDNLVSNSS 250 >gi|116748930|ref|YP_845617.1| type II and III secretion system protein [Syntrophobacter fumaroxidans MPOB] gi|116697994|gb|ABK17182.1| type II and III secretion system protein [Syntrophobacter fumaroxidans MPOB] Length = 482 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 136/437 (31%), Positives = 207/437 (47%), Gaps = 49/437 (11%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 +KI + + K +I++ V + P AD+V SP +Y+ GK G N+ L D K Sbjct: 45 RKIHLQVGKSVIVRSGAPVVRTTLGSPDVADIVALSPTQIYITGKATGVTNLTLWQSDDK 104 Query: 108 QMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 DI + D L+ L + + +I+V D++ L G + + +A+ L+E Sbjct: 105 VSAIYDIEVAPDTMRLKEKLHEVLPGERDIKVSASHDSLTLSGTISSSTHLAQAMTLAEA 164 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------- 217 + S KKV+NLL ++G QV L+V +AE+ R + ++G Sbjct: 165 Y-----------SGGKKVINLLQVSGVHQVMLEVRVAEMSRTLTNRLGINSIWNVNGSMG 213 Query: 218 -SITGSSSGPSK------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 S+ G+ + K +FA F GG F+ +D AL+ Sbjct: 214 ASLLGNLASLDKFAGSASGSSSEFTFAPTVNSLFHILGGPFTWTAFID---------ALK 264 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 ++ LAEPTL A+SGQSASF +GG+ V G + +GV L FTPTVL+ Sbjct: 265 EDGLVKVLAEPTLIAMSGQSASFLAGGEFPIP-VPQGLGTVGIEYKQFGVSLAFTPTVLN 323 Query: 325 PGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 R+ + + EVSE I + +P RK T +EL G + +AGLLKD I++ Sbjct: 324 DKRMNIIVAPEVSELDYTTAINIAGVAVPGLTTRKVSTAIELNDGQSFAIAGLLKDTIRE 383 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 + P+L IP+LGALFR+ F R ETE+ + TP L KP+ + P D + +E Sbjct: 384 DAKKFPILGSIPVLGALFRSVSFQRNETELIVIVTPRLAKPIDVATQPLPTDKF-IEPSD 442 Query: 441 KAFFFNRVNKIYGPKEA 457 FFF + + PK A Sbjct: 443 SEFFFLGLLQGRAPKPA 459 >gi|254192422|ref|ZP_04898861.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|169649180|gb|EDS81873.1| type II/III secretion system protein [Burkholderia pseudomallei S13] Length = 690 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 220/416 (52%), Gaps = 20/416 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 505 >gi|90411206|ref|ZP_01219219.1| Flp pilus assembly protein [Photobacterium profundum 3TCK] gi|90328052|gb|EAS44373.1| Flp pilus assembly protein [Photobacterium profundum 3TCK] Length = 489 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 130/441 (29%), Positives = 218/441 (49%), Gaps = 43/441 (9%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 ++V + + IS+ NK ++++P + + V +P AD+++ +Y+ GK G NV Sbjct: 28 TNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNKIYVLGKQFGTTNV 87 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I+ + + LD+ + D+ L+ L F+ + I V + +VL G V + Sbjct: 88 IIWDSKDRLITVLDVEVTHDLNALKSKLYEFMPNEKISVYTSQNKLVLSGEVSSADKIAT 147 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 AVE++ TF ++ +++NL+ + G QV L+VT+AEV+R ++++ + + Sbjct: 148 AVEIANTF-----------TADGEIINLMAVGGSHQVMLEVTVAEVQRSLVREFDSKF-V 195 Query: 220 TGSSSGPSKSFAADFGGKFVSEGG------DFSV--------KGVLDRFSFETVLHALER 265 SG A+ G S G D +V G+ F L A Sbjct: 196 FARQSGNWTWGGANGGASVPSNVGILDPILDAAVSNPLNIDDNGLFASFLSSNTLFAAAF 255 Query: 266 ATA-----IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 A + LAEPTLTAISG+ A F SGG+ + ++ ++GV L F P Sbjct: 256 DIAKTNGLAKVLAEPTLTAISGEEAEFISGGEFPIPVPNDEN--ITIEFKEFGVALKFLP 313 Query: 321 TVLSPGRIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVL 370 TV+S I L + EVSE + + G +PS R A TT+EL +G TI + Sbjct: 314 TVMSADSINLALNIEVSEISNQNAVSITPGGTNSQFFVPSLSKRGAKTTIELGNGQTIGI 373 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL ++I + + +P L +PI+G LFR+ F + ETE+ I TP L KPV +D++ P Sbjct: 374 AGLLNENITDVVDKLPGLGDLPIIGQLFRSQSFRKGETELVILVTPRLAKPVRKQDITLP 433 Query: 431 DDHYSVEDDAKAFFFNRVNKI 451 D++ +D + + R++++ Sbjct: 434 TDNFVEPNDWEYYLLGRMSEL 454 >gi|254255254|ref|ZP_04948570.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa AUO158] gi|124900991|gb|EAY71741.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa AUO158] Length = 682 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 123/407 (30%), Positives = 219/407 (53%), Gaps = 19/407 (4%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ G G Sbjct: 100 VSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGMSVGTTNMIVQGKSGACR 159 Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D A L+ +L + + + ++ V + T+VL G V + Q +Q+AV ++ + Sbjct: 160 V-IDVAVGADAAGLQASLMQLMPNERDVHVSTAAGTIVLSGSVSSSQAAQQAVAIARAY- 217 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 S + V+N+L++ QV L+V +AEV + ++ Q+G +I G S Sbjct: 218 GDSAGDGNGGGKPGSVLNMLSVTSPQQVMLEVKVAEVSKTLINQLGSAFNIQGGFGSWSG 277 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + ++ V+ G F+ + F + A ++ LAEP L ISGQ A+F Sbjct: 278 ALVSNLLAG-VASGAVFNKA---NNRPFSVAVDAQNTDNLVKILAEPNLVTISGQEATFL 333 Query: 289 SGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVN 344 +GG+ + ++ + T ++ ++GV L FTPTVL+ GRI L++ EVSE GV Sbjct: 334 AGGKIFIPVPQSSGTGTTTITLQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVT 393 Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 A +P R+A TTV++ G T + GL+KD+ + IP + ++P+LGA Sbjct: 394 LSATNVSGASILPLITTRRASTTVQMSDGETFAIGGLIKDNASGALKAIPGVGEVPVLGA 453 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 LFR++ F ++ TE+ TP LVKP++ D++ P D +S ++A + Sbjct: 454 LFRSTSFQQDRTELIFVITPHLVKPLSTADVALPTDSFSKPNEADVY 500 >gi|167574003|ref|ZP_02366877.1| type II/III secretion system protein [Burkholderia oklahomensis C6786] Length = 548 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 127/423 (30%), Positives = 217/423 (51%), Gaps = 32/423 (7%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 91 EMREATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGLSVGTTNMIVQ 150 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + A+ +IRV +DT+VL G + D+Q A Sbjct: 151 GRSGACQI-IDVAVGADAGGLQTSLRQLMPAERDIRVSTAADTIVLAG---NVSDAQAAQ 206 Query: 162 ELSETFLSQSGRNQYANSSSKK-------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + + S R + V+N+L + QV L+V +AEV + ++ Q+G Sbjct: 207 QAVAIAKAYSDRTNVGPGAGAGAGGPRGGVLNMLTVTSPQQVLLEVKVAEVSKTLINQMG 266 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 +I G S+ ++ G+ ++ F+ L A ++ LAE Sbjct: 267 SAINIQGGFG----SWTGMLVSSLLAGVGNGIAASKSNKLPFKAALDAQNTDQPVKILAE 322 Query: 275 PTLTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 P L ISGQ A+F +GG+ + ++ + T ++ ++GV L FTPTVLS GRI L+ Sbjct: 323 PRLVTISGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVGLKFTPTVLSNGRISLK 382 Query: 332 IQTEVSE-----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + EVSE V GV+ +P R+A TTV++ G T + GL+KD+ Q Sbjct: 383 VAPEVSELSPTGVTLSATNVSGVSI--LPLITTRRASTTVQMGDGETFAIGGLIKDNAQG 440 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 +P + +IP+LGALFR++ F ++ TE+ TP LVKP+ D+ P D ++ ++ Sbjct: 441 TLRALPGIGEIPVLGALFRSTSFQQDRTELVFIITPHLVKPLETADVPLPTDSFTKPNEV 500 Query: 441 KAF 443 + Sbjct: 501 DVY 503 >gi|332188377|ref|ZP_08390102.1| bacterial type II and III secretion system family protein [Sphingomonas sp. S17] gi|332011606|gb|EGI53686.1| bacterial type II and III secretion system family protein [Sphingomonas sp. S17] Length = 511 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 138/451 (30%), Positives = 224/451 (49%), Gaps = 44/451 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + I + ++ +P + D+ V+D T ADV V SP +Y+FGK G+ + G + Sbjct: 52 LEINTGRARLITLPRPMTDLFVADDTIADVQVRSPTQLYIFGKKPGETTISATARGGAVV 111 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + I ++ + LR + ++ I ++ ++L G V D A L + ++ Sbjct: 112 YATTVRIGNNLDSIGRMLRLAMPEAQIASTPMNGLILLTGTVAAPDDVAEAERLVQAYVG 171 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG------------FQH 217 + KV++ L A QV L+V IAEV R+ +K IG F Sbjct: 172 KD----------TKVISRLKTATPLQVNLQVRIAEVNRNFVKSIGVNLLNRDRNSSGFVF 221 Query: 218 SITGSSSGP------SKSFAADFGGKF-VSEGGDFSVKGVLDRFSFETVLHAL---ERAT 267 I GS P + + G ++ ++G + G+ R +L A+ E Sbjct: 222 GI-GSGRNPGTITDLTNAAGTTIGTQYGFNQGPLRTTLGLGGRVLGMDLLGAMDLGETLG 280 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + TLA P LTA+SG++A+F +GG+ + +S+ GA SV YGV L +TPTVLS GR Sbjct: 281 QVSTLANPNLTALSGETATFLAGGE-IPIPLSTGLGAVSVEYKQYGVSLSYTPTVLSDGR 339 Query: 328 IGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 I LR++ EVS+ + ++ +P+ R+A+TT+EL SG ++++ GLL + E Sbjct: 340 ISLRVRPEVSQITSVGAVTISGTTIPALTTRRAETTLELGSGQSMMIGGLLSNSRDNSIE 399 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKA 442 P L +P++GALFR++ F R ETE+ I TP+LVKPV + D++ P D +DA+ Sbjct: 400 KTPWLGDLPLIGALFRSNAFKRNETELVIIITPYLVKPVNSPSDIALPTDGQRSPNDAER 459 Query: 443 FFFNRVNKIYG-----PKEASEVEGQNYKGA 468 R+ P A+ V+G+ GA Sbjct: 460 VLLGRMAAGSSEPRPVPTMATPVQGRPVTGA 490 >gi|167924333|ref|ZP_02511424.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei BCC215] Length = 438 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 124/409 (30%), Positives = 217/409 (53%), Gaps = 20/409 (4%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ G G Sbjct: 7 VSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQGKSGACR 66 Query: 110 LNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV +++ + Sbjct: 67 I-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVAIAKAYS 125 Query: 169 SQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I G Sbjct: 126 NRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNIQGGFG-- 183 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S+ ++ G ++ + A ++ LAEP L ISGQ A+ Sbjct: 184 --SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVTISGQEAT 241 Query: 287 FTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE----- 338 F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ EVSE Sbjct: 242 FLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEVSELSPTG 301 Query: 339 -PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + N G+ +P R+A TTV++ G T + GL+KD+ Q + +P + ++P+L Sbjct: 302 VTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPGIGELPVL 361 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 GALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 362 GALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 410 >gi|167566934|ref|ZP_02359850.1| outer membrane protein [Burkholderia oklahomensis EO147] Length = 550 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 127/423 (30%), Positives = 217/423 (51%), Gaps = 32/423 (7%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 93 EMREATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGLSVGTTNMIVQ 152 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + A+ +IRV +DT+VL G + D+Q A Sbjct: 153 GRSGACQI-IDVAVGADAGGLQTSLRQLMPAERDIRVSTAADTIVLAG---NVSDAQAAQ 208 Query: 162 ELSETFLSQSGRNQYANSSSKK-------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + + S R + V+N+L + QV L+V +AEV + ++ Q+G Sbjct: 209 QAVAIAKAYSDRTNVGPGAGAGAGGPRGGVLNMLTVTSPQQVLLEVKVAEVSKTLINQMG 268 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 +I G S+ ++ G+ ++ F+ L A ++ LAE Sbjct: 269 SAINIQGGFG----SWTGMLVSSLLAGVGNGIAASKSNKLPFKAALDAQNTDQPVKILAE 324 Query: 275 PTLTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 P L ISGQ A+F +GG+ + ++ + T ++ ++GV L FTPTVLS GRI L+ Sbjct: 325 PRLVTISGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVGLKFTPTVLSNGRISLK 384 Query: 332 IQTEVSE-----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + EVSE V GV+ +P R+A TTV++ G T + GL+KD+ Q Sbjct: 385 VAPEVSELSPTGVTLSATNVSGVSI--LPLITTRRASTTVQMGDGETFAIGGLIKDNAQG 442 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 +P + +IP+LGALFR++ F ++ TE+ TP LVKP+ D+ P D ++ ++ Sbjct: 443 TLRALPGIGEIPVLGALFRSTSFQQDRTELVFIITPHLVKPLETADVPLPTDSFTKPNEV 502 Query: 441 KAF 443 + Sbjct: 503 DVY 505 >gi|294139870|ref|YP_003555848.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12] gi|293326339|dbj|BAJ01070.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12] Length = 442 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 138/418 (33%), Positives = 207/418 (49%), Gaps = 58/418 (13%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ LNK ++Q+P + + +S T AD + + +FGK G ++ ++ D + Sbjct: 3 LAVTLNKAELVQLPKTAKSIFISSNTIADYQALTNTKIMVFGKRAGTTSLYVLDADENVI 62 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + + + ++ L +R D+ + E ++ + L G V T +++ V LSE ++S Sbjct: 63 YSASVKVSHNVTELNGLIRSEFPDALVSAESIAGKLFLKGRVPTPTMAEKIVRLSEGYVS 122 Query: 170 Q----SGRNQYANSSSK------------------------KVMNLLNIAGEDQVTLKVT 201 Q G+ Q SS + +++N L I QV L+V Sbjct: 123 QPQSSKGKQQGGKSSGQAKGSKQQGQNGGGQESQSGTGSKGELINQLEITMSTQVNLRVR 182 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-GKFV-SEGGDFSVKGVLDRFSFETV 259 IAEV R++ ++G + G FG GKF S+G FS V+ Sbjct: 183 IAEVSRNVSNKLGIKWGSQG------------FGTGKFAFSDGLGFSKLSVM-------- 222 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + AL I LAEP LTAISG+ ASF GG+ + T S+ +GV L F Sbjct: 223 VDALATNGMITVLAEPNLTAISGEKASFLVGGEVPIPLIYGDT--VSIEYKPFGVRLDFK 280 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA--GD--MPSYRVRKADTTVELPSGGTIVLAGLLK 375 PTVLSP RI L+I+ EVS N GD P + RKA TT+EL SG + L GLL+ Sbjct: 281 PTVLSPNRISLQIEPEVSTISQSTNVVMGDSSFPVFMTRKASTTIELASGQSFALGGLLQ 340 Query: 376 D-DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 DI+Q+++ +P + IPILGALFR++ F REETE+ I AT +LV+P L P D Sbjct: 341 STDIEQMQK-MPWIGDIPILGALFRSNEFKREETELIIIATVYLVEPTRGDSLPLPTD 397 >gi|126445563|ref|YP_001064076.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|126225054|gb|ABN88559.1| type II/III secretion system protein [Burkholderia pseudomallei 668] Length = 690 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 125/420 (29%), Positives = 219/420 (52%), Gaps = 24/420 (5%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSKK------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+G Sbjct: 214 AIAKAYSNRTNAGAAGSGGGNGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGS 273 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 +I G S+ ++ G ++ + A ++ LAEP Sbjct: 274 AVNIQGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEP 329 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRI 332 L ISGQ A+F +GG+ SS T+ T ++GV L FTPTVLS GRI L++ Sbjct: 330 RLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKV 389 Query: 333 QTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 EVSE + N G+ +P R+A TTV++ G T + GL+KD+ Q + Sbjct: 390 APEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLK 449 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +P + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 ALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 509 >gi|172065273|ref|YP_001815985.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] gi|171997515|gb|ACB68432.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] Length = 656 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 125/422 (29%), Positives = 217/422 (51%), Gaps = 19/422 (4%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ G G Sbjct: 100 VSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQGRSGACR 159 Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D L+ +L++ + + +I V + T+VL G V Q +Q+AV+++ + Sbjct: 160 V-IDVAVGADAGGLQSSLQQLMPGERDIHVSTAAGTIVLAGTVSNSQAAQQAVQIAHAY- 217 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 S S + V+N+L + QV L+V +AEV + ++ Q+G +I G S Sbjct: 218 SDSAGDGGGAGKGAGVLNMLAVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQGGFGSWSG 277 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + ++ S G + + F A ++ LAEP L ISGQ A+F Sbjct: 278 ALVSNLLAGVASAG----IFNKANNKPFSVAADAQNTDNLVKILAEPNLVTISGQEATFL 333 Query: 289 SGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE------P 339 +GG+ SS TS T ++GV L FTPTVL+ GRI L++ EVSE Sbjct: 334 AGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVT 393 Query: 340 VIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + N G +P R+A TTV++ G + + GL+KD+ + IP + ++P+LGA Sbjct: 394 LSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGVGEVPVLGA 453 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 LFR++ F ++ TE+ TP LV+P+ D+ P D +S ++ + + G ++ Sbjct: 454 LFRSTSFQQDRTELIFLITPHLVRPLQTADVPLPTDSFSKPNEVDVYATGNMEGRKGVRK 513 Query: 457 AS 458 A+ Sbjct: 514 AT 515 >gi|163733542|ref|ZP_02140985.1| type II/III secretion system protein, putative [Roseobacter litoralis Och 149] gi|161393330|gb|EDQ17656.1| type II/III secretion system protein, putative [Roseobacter litoralis Och 149] Length = 440 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 128/441 (29%), Positives = 220/441 (49%), Gaps = 34/441 (7%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + +++ N+ ++++ + ++ +++P AD+ S R++Y+ GK G + L+ G+ Sbjct: 20 ETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSDRSIYVLGKVPGITTLTLLDAAGQ 79 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + N+++ + D+ + LR+ + I V +D +VL G V + Q +A+EL+ Sbjct: 80 LITNVEVRVAPDLTEFKERLRQILPGEAIEVRTANDGIVLSGQVSSSQRLSKALELA--- 136 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 A + +V NL+ + G QV LKV AE+ R + KQ+ I G+ + Sbjct: 137 ---------ARYAPDRVSNLMTVGGVQQVMLKVRFAEMSRGVSKQLQSSLRIGGTEAQAG 187 Query: 228 K--------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + AAD ++G F G L + +L ALE A+RTLAEP L + Sbjct: 188 IGRGIGGIPNLAAD-----TAQGAVFFDFG-LGSTQVQLLLEALETKGAVRTLAEPNLVS 241 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-- 337 +SGQ A+F +GG+ Y S SV +G+ L+F P V+ I L++ S Sbjct: 242 LSGQEANFLAGGE--YPVPVQSEDGISVDYKPFGIELNFVPRVVDGDLINLQLSAATSSI 299 Query: 338 EPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +P G++ GD + ++ R+A TTVE+ G + +AGLL+D+ +P LS +PIL Sbjct: 300 DPSNGISVGDSFTVDAFIRREASTTVEMRDGESFAIAGLLEDNFNDNISQVPWLSDVPIL 359 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR-VNKIYG 453 GALFR++ + R +TE+ I T LV P L+ P D + F R + + Sbjct: 360 GALFRSTDYMRNQTELVIIITAHLVTPTRGEALALPTDRIRPPSEKDLFLNGRTIQTLNA 419 Query: 454 PKEASEVEGQNYKGAIGFIYK 474 A EV Q++ G+ G++ + Sbjct: 420 RGAAGEVAKQDFGGSYGYVME 440 >gi|251789646|ref|YP_003004367.1| type II and III secretion system protein [Dickeya zeae Ech1591] gi|247538267|gb|ACT06888.1| type II and III secretion system protein [Dickeya zeae Ech1591] Length = 474 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 131/418 (31%), Positives = 213/418 (50%), Gaps = 32/418 (7%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 +I +I + +N+ +LQ+ VL++DP A + SP +++F K VG + + Sbjct: 38 QIEATSEIRLNINQGRMLQLDHIPDSVLIADPAIASFELPSPGNVFVFAKGVGNTTLYAM 97 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAV 161 DG+ + + +++E D+ L+ LRR D+ I++E V + V++ G V T QD+++ + Sbjct: 98 DVDGQVVSAIHLVVEHDLDALKERLRREFPDAQIQLEASVPNGVIVRGSVETPQDAKKVI 157 Query: 162 ELSETFLSQSGRNQY--------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 + + ++ S ++ ++S+S V+N L + Q+ ++V + EV R Sbjct: 158 DSVQAWVGASASSRGSAGGGGGGGSAMPASSSTSPNVVNQLKVRTPSQINIRVRVVEVSR 217 Query: 208 DILKQIGFQ--------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV--KGVLDRFSFE 257 + ++GF + G SG +F + F E G S+ S Sbjct: 218 KLTHELGFNWDSSLNRGRNTIGFGSGALSNFFSATSNTFSREAGSASLGYNYTGSDGSLG 277 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 T+L AL LAEP LTA+SG++A+F +GG+ V + + S+ YGV+L Sbjct: 278 TLLSALNSQGMASVLAEPNLTAMSGETAAFAAGGE--VPIVLITGNSVSIDYKSYGVILR 335 Query: 318 FTPTVLSPGRIGLRIQTEVSEPV----IGVNAGD-MPSYRVRKADTTVELPSGGTIVLAG 372 TPT+LS RI L I EVSE + + G +P+ VR+ADTTVEL SG + LAG Sbjct: 336 MTPTLLSANRISLHIAPEVSELTSVGSVQLEGGSTIPALTVRRADTTVELASGQSFALAG 395 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 +L+ Q G+P LS IP+LG F + EETE+ I AT ++V PV+ L P Sbjct: 396 MLRSSNSQTVAGVPGLSGIPLLGRAFERESTSSEETELVIIATAYVVAPVSAGTLQTP 453 >gi|303248302|ref|ZP_07334564.1| type II and III secretion system protein [Desulfovibrio fructosovorans JJ] gi|302490327|gb|EFL50239.1| type II and III secretion system protein [Desulfovibrio fructosovorans JJ] Length = 528 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 135/470 (28%), Positives = 229/470 (48%), Gaps = 72/470 (15%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 AA + V + ++S+ + K +ILQ DV V V+ P AD V+ SPR +Y+ G+ Sbjct: 28 AAPGRMGTVAVRTAPRLSLTIGKSVILQSDADVSRVSVAQPEIADFVLLSPRQIYVTGRA 87 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVR 152 G N+ L K D+ + DI+ L+ L + +S I V D++ L G VR Sbjct: 88 PGITNLTLWDKGDKVRAVYDLDVAPDISRLKKMLHDVMPGESGIEVMSSQDSIALSGTVR 147 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + ++A+ L+E + + KKV+NLL++ G QV L+V +AE+ + ++ + Sbjct: 148 DSANMKKALALAEVY------------APKKVLNLLSVGGVQQVMLEVRVAEMSKSLVNR 195 Query: 213 IG----------FQHSITGS----SSGPSKSFAADFGGKFVS---EGGD----------- 244 +G F +++ GS +SG ++ ++++ GD Sbjct: 196 MGINLNAVGDGNFAYTLIGSLSSVASGMFDTYYPQNAYQYITMTANSGDGNSSFDSTPIQ 255 Query: 245 ----------------FSVKGVLDRF----------SFETVLHALERATAIRTLAEPTLT 278 F+ + R+ + V+ L++ ++ LAEP L Sbjct: 256 LAYREFNQPSSKATMSFNQGTAVARWNTNFGGAGNTAMTAVVDMLKQNGLVKILAEPNLV 315 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 ++GQSA F +GGQ + VSS G TS+ +GV L+FTPTV++ RI L++ EVS Sbjct: 316 CLNGQSADFLAGGQ-IPVPVSSGLGTTSIEWKKFGVQLNFTPTVVAGDRINLKVNPEVSN 374 Query: 339 ----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 I + +P+ R+ TT+EL +G T +AG+L + + + P+L IP+L Sbjct: 375 LDYTRAITLLGSTVPAINTRQTSTTIELKNGQTFAIAGMLNEQSRDSMDKYPVLGDIPVL 434 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 GALF++S++ +++TE+ I T LVKP+ + +S P D DD + F Sbjct: 435 GALFKSSQYQKDQTELVILITAHLVKPLDKKAISLPTDSAHEPDDLEFFL 484 >gi|253687068|ref|YP_003016258.1| type II and III secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753646|gb|ACT11722.1| type II and III secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 478 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 130/417 (31%), Positives = 220/417 (52%), Gaps = 29/417 (6%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++ + +N+ +LQ+ VLV+DP A + SP ++++ K+VG + + +G Sbjct: 55 EVHLTVNQGRLLQLADTPDSVLVADPNIASFELPSPGNLFVYAKSVGVTTLYAMDENGNV 114 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETF 167 + + ++ E D+ L ++R ++I++E + V++ G V T QD++R ++ + + Sbjct: 115 INAIRLVSEHDLKALGERMKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAY 174 Query: 168 LSQSGRNQY-----------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 +S S Q ++ SS KV+N L I Q+ ++V + EV R + ++GF Sbjct: 175 ISASSGGQGGGGGGGEKLPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFN 234 Query: 217 HSITGSSSGPSKSFAADFGGK---FVSEGGDFSV---KGVLD--RFSFETVLHALERATA 268 + + S+ S + +A G + F + G FS G L+ R +L A+ + Sbjct: 235 WAASLSTG--SGNMSAGSGSRLNLFNATTGRFSNPTDSGFLNFGRSRLSGLLTAMNQQGM 292 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 LAEP LTA+SG++A+F +GG+ V + + S+ YGV+L TPT+LS RI Sbjct: 293 ATVLAEPNLTAMSGETAAFAAGGE--VPIVLITNNSVSIDYKSYGVILRMTPTLLSANRI 350 Query: 329 GLRIQTEVSEPV----IGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 L I EVSE + + G +P+ VR+ADTTVEL SG + LAG+L+ Q Sbjct: 351 SLHIAPEVSELTDVGSVQLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTIN 410 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 G+P LS +P+ G LF + ++EETE+ I AT ++V+PV DL P + D + Sbjct: 411 GVPGLSSVPMFGRLFESEATSQEETELVIIATAYVVEPVNAGDLQTPGQGVKMLDSS 467 >gi|115361033|ref|YP_778170.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] gi|115286361|gb|ABI91836.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] Length = 657 Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 122/399 (30%), Positives = 210/399 (52%), Gaps = 18/399 (4%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ G G Sbjct: 100 VTVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQGRSGACR 159 Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D L+ +L++ + + +I V + T+VL G V Q +Q+AV+++ + Sbjct: 160 V-IDVAVGADAGGLQSSLQQLMPGERDIHVSTAAGTIVLAGTVSNSQAAQQAVQIAHAYS 218 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 +G V+N+L + QV L+V +AEV + ++ Q+G +I G S Sbjct: 219 DSAGEGAGGAGKGAGVLNMLAVTSPQQVMLEVKVAEVSKTLINQMGTAFNIQGGFGSWSG 278 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + ++ S G + + F A ++ LAEP L ISGQ A+F Sbjct: 279 ALVSNLLAGVASAG----IFNKANNKPFSVAADAQNTDNLVKILAEPNLVTISGQEATFL 334 Query: 289 SGGQHLYKTV-SSSTGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSE------P 339 +GG+ SS TG +S+T + +GV L FTPTVL+ GRI L++ EVSE Sbjct: 335 AGGKIFIPVPQSSGTGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSELSQTGVT 394 Query: 340 VIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + N G +P R+A TTV++ G + + GL+KD+ + IP + ++P+LGA Sbjct: 395 LSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGSLKAIPGVGEVPVLGA 454 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 LFR++ F ++ TE+ TP LV+P+ D+ P D +S Sbjct: 455 LFRSTSFQQDRTELIFLITPHLVRPLQTADVPLPTDSFS 493 >gi|152994347|ref|YP_001339182.1| type II and III secretion system protein [Marinomonas sp. MWYL1] gi|150835271|gb|ABR69247.1| type II and III secretion system protein [Marinomonas sp. MWYL1] Length = 463 Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 127/443 (28%), Positives = 222/443 (50%), Gaps = 20/443 (4%) Query: 11 MMSIFLFSSNPSVAKLPPIK---EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 + +FL S A L P+ E+ + + + ++ +++ +N+ +L +P + Sbjct: 13 LFGVFLLSGVSRAAYLEPMNNTSESQSVIGTSAYQQVEVSGNVNLVVNRGKLLTLPQNAA 72 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 VL+++P A + SP +++F K G ++ + + + +L L + D+ L + Sbjct: 73 KVLIANPDIASFQMPSPDNVFVFAKKSGSTSLYALDDENQVILALTLNAGYDLNSLTKQV 132 Query: 128 RRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQRAVELSETFLSQSGRNQY-ANSSSKKVM 185 + + SN++V ++ +++ G V+T Q ++R ++ E F+ A S + +++ Sbjct: 133 AQEVPGSNVQVGPATENGLIVRGSVQTPQQAKRVIDSVEAFVGGDATGSAGAGSQTLRIV 192 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 N L + Q+ + V I EV R++ +GF + K FA + F + G F Sbjct: 193 NQLKVELSSQINISVRIVEVSRNLSSSLGFSWDALFDNG---KYFARNSASLFDATTGAF 249 Query: 246 SVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + GV + + VL AL LAEP LTA+SG++A F GG+ ++ Sbjct: 250 TGSGVTNAVFGGASGNLGGVLSALSNDGLASILAEPNLTAMSGETAGFAVGGEVPIVIIT 309 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRK 355 ++ ++ YGV++ TPT+LSP RI L I EVS E + + +P+++VR+ Sbjct: 310 NNN--VTIEYKQYGVIMRMTPTLLSPNRISLHIAPEVSDLTEEGAVELQGLTVPAFKVRR 367 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ADTTVEL SG + LAG+L+ + Q G+P L IP LG LF + +EETE+ I AT Sbjct: 368 ADTTVELASGQSFALAGMLRSSVSQTVTGVPGLRSIPGLGRLFESETNQKEETELVIIAT 427 Query: 416 PFLVKPVAMRDLSRPDDHYSVED 438 ++V P + DL P S D Sbjct: 428 AYVVAPTSSGDLQTPAKGISTID 450 >gi|28899193|ref|NP_798798.1| putative pilus assembly transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836824|ref|ZP_01989491.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810] gi|260361569|ref|ZP_05774596.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030] gi|260876726|ref|ZP_05889081.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034] gi|260898195|ref|ZP_05906691.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466] gi|260900397|ref|ZP_05908792.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037] gi|28807417|dbj|BAC60682.1| putative pilus assembly transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749970|gb|EDM60715.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810] gi|308089085|gb|EFO38780.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466] gi|308091468|gb|EFO41163.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034] gi|308109123|gb|EFO46663.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037] gi|308114031|gb|EFO51571.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030] gi|328474270|gb|EGF45075.1| pilus assembly protein CpaC [Vibrio parahaemolyticus 10329] Length = 487 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 129/428 (30%), Positives = 211/428 (49%), Gaps = 26/428 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G+ +S+ ++ L + + V + DP D+VV ++L GK +G NV + G Sbjct: 26 GRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNELFLIGKKLGTTNVSVWDSRG 85 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + ++ + D+ L+ L +F+ D +I V + VVL G+V + Q+ AV+++ET Sbjct: 86 RLIEQFNVEVTHDLNTLKSKLFQFLPDESIEVHSAQEKVVLRGLVSSQQNMDIAVKIAET 145 Query: 167 FL---SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 F + + A V+NLL+I G QVTL+VT+AEV+R ++++ Sbjct: 146 FALGDAADEEDDNAKDDESSVINLLSIGGAQQVTLEVTVAEVQRSLVRRFDSNFHFF-QK 204 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVK-----GVLDRF-----SFETVLHALERATAIRTLA 273 SG A GG + G +V G L F F L ++ + LA Sbjct: 205 SGDFTWGATTAGGGIDNIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAKQNGVAKVLA 264 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 EP+LTA+SG A F +GG+ + + ++ +YGV L F P +LS RI L++ Sbjct: 265 EPSLTALSGTQAEFVAGGE--FPIPVPNEDGITIDYKEYGVQLDFVPFILSDKRINLKLN 322 Query: 334 TEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 VSE V+ N + +P R A TT+EL G TI +AGLL ++ + + + Sbjct: 323 VNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLSENARNVAD 382 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D + +D + + Sbjct: 383 GIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRVTLPTDGFVAPNDVEFY 442 Query: 444 FFNRVNKI 451 + K+ Sbjct: 443 LLGKGAKL 450 >gi|85373131|ref|YP_457193.1| type II secretion system protein [Erythrobacter litoralis HTCC2594] gi|84786214|gb|ABC62396.1| type II secretion system protein [Erythrobacter litoralis HTCC2594] Length = 574 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 146/475 (30%), Positives = 231/475 (48%), Gaps = 74/475 (15%) Query: 22 SVAKLP----PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 S+A LP P + A+A I V+ + +SIG ++I VP + DV +++ A Sbjct: 39 SLAALPVAAGPAQVAHAQSI----VKPSQDVVLSIGRGELI--SVPGAMADVFIANDAVA 92 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 DV + S R +Y+FGK+ G+ + G + ++ + +I L+ L + ++ I Sbjct: 93 DVQIKSQRQLYVFGKSGGETTIYASNSAGDVIWAANVRVANNIDSLDQMLALAMPEAKIA 152 Query: 138 VE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 M ++TV+L G V +D+ A L FL G N V++ L +A QV Sbjct: 153 TATMGTNTVLLTGTVAAPEDAAEAERLVTAFLGD-GAN---------VISRLKMATPLQV 202 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG----------------------PSKSFAADF 234 L+V IAEV R ++++IG + ++ G P +A F Sbjct: 203 NLQVRIAEVSRSLVREIGSNLTTRDTTDGFLFGVNRGRNFGSITDIDTSGFPQLDASAQF 262 Query: 235 G--------------GKFVSEGGDFSVK------------GVLDRFSFETVLHALERATA 268 G G+FV G +F V G L + ER Sbjct: 263 GLPPGSLSLPFNPATGQFVVGGANFPVASNNPGQTALNFAGRLFGLDIASAFDVGERLGL 322 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 I TL+ P LTA+SG++A+F +GG+ +S G TS+ ++GV L ++PTVL+ GRI Sbjct: 323 ITTLSNPNLTALSGETATFLAGGEFPIP-ISQGLGTTSIEYRNFGVSLAYSPTVLANGRI 381 Query: 329 GLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +R++ EVSE I +N +P+ R+A+TTVEL SG + ++AGL+ + Q + Sbjct: 382 SIRVRPEVSELSSQGAITLNGFQIPALTTRRAETTVELGSGQSFMIAGLMSNSSQNTVDK 441 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 P L +PI+G LFR++ F + ETE+ I TP+LVKPV D+ P D Y ++ Sbjct: 442 APGLGDVPIIGNLFRSTSFRKGETELVIVVTPYLVKPVDGTDIKLPTDGYQTPNE 496 >gi|50119734|ref|YP_048901.1| hypothetical protein ECA0789 [Pectobacterium atrosepticum SCRI1043] gi|49610260|emb|CAG73703.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043] Length = 478 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 129/423 (30%), Positives = 222/423 (52%), Gaps = 29/423 (6%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + + + +++ +LQ+ VLV+DP A + SP ++++ K+VG + + Sbjct: 49 EVAETNVVHLTVHQGRLLQLDALPDSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAM 108 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAV 161 +G + + ++ E D+ L ++R ++I++E + V++ G V T QD++R + Sbjct: 109 DENGNVINAIRLVSEHDLKALGERMKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVI 168 Query: 162 ELSETFLSQSGRNQY-----------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + + ++S S Q ++ SS KV+N L I Q+ ++V + EV R + Sbjct: 169 DSIQAYISASAGGQGGGGGGGEKLPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLT 228 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGK---FVSEGGDFSV---KGVLD--RFSFETVLHA 262 ++GF + + S+ S + +A G + F + G F+ G L+ R +L A Sbjct: 229 SELGFNWAASLSTG--SGNMSAGSGSRLNLFNATTGRFANPTDSGFLNFGRSRLSGLLTA 286 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 + + LAEP LTA+SG++A+F +GG+ V + + S+ YGV+L TPT+ Sbjct: 287 MNQQGMATVLAEPNLTAMSGETAAFAAGGE--VPIVLITNNSVSIDYKSYGVILRMTPTL 344 Query: 323 LSPGRIGLRIQTEVSEPV----IGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 LS RI L I EVSE + + G +P+ VR+ADTTVEL SG + LAG+L+ Sbjct: 345 LSANRISLHIAPEVSELTDVGSVQLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSA 404 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 Q G+P LS +P+ G LF + ++EETE+ I AT ++V+PV DL P + Sbjct: 405 GSQTINGVPGLSSVPMFGRLFESESTSQEETELVIIATAYVVEPVNAGDLQTPGQGVKML 464 Query: 438 DDA 440 D + Sbjct: 465 DSS 467 >gi|87199534|ref|YP_496791.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87135215|gb|ABD25957.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 517 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 135/443 (30%), Positives = 209/443 (47%), Gaps = 72/443 (16%) Query: 60 LQVPVDVQDVLVSDPTKA----------DVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 L+VPV+ V+ +D T A DV+ + R++Y+ GK +G ++ L G+ + Sbjct: 41 LEVPVNKSQVVSTDRTIAKALVGNDDIADVLPVTTRSIYVLGKKMGTTSLTLYDATGRVL 100 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 +D+ + D+ L L+ F+ + I + +D +VL G+V RAV+L+ T+ Sbjct: 101 SIMDVAVGPDVEGLRSQLKTFVPNDKIDARLSNDAIVLSGLVNDPGAIDRAVQLARTY-- 158 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 + KV+NL+++ QV L+V AEV R GF ++G +S + Sbjct: 159 ----------AGDKVVNLISLGSSQQVMLEVKFAEVNR----TAGFDVGVSGFASKGTFE 204 Query: 230 FAADFGGKFVSEGGDFSVKG---------------------------------VLDRFSF 256 A G + V G D +V G +D Sbjct: 205 SAIGKGAQLV-PGADVTVSGNSGGVSTSTTIPGASILKLSSITGSFGIFRKSFSIDGLGI 263 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------ATSVT 308 + VL+ALE +TLA+PTL A+SG+ ASF +GG+ V S T A +V Sbjct: 264 DAVLNALETKGMAKTLAQPTLLALSGERASFLAGGEFPVPVVQSGTTGTGNGNGGAITVE 323 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDM--PSYRVRKADTTVELPS 364 +GV L FTPTVL I L ++ EVS +P + G + P R R+A TT+EL Sbjct: 324 FKPFGVSLGFTPTVLGDKTINLLVEPEVSAIDPTASLTVGSITIPGLRTRRASTTLELRD 383 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G + +AGLL+ D + + +PLL +PI+G+LFR+S F++ ETE+ I TP LV P+ Sbjct: 384 GESFAIAGLLQKDFKTSVQQLPLLGSLPIIGSLFRSSAFSKGETELLIVVTPRLVSPIKP 443 Query: 425 RDLSRPDDHYSVEDDAKAFFFNR 447 + P D + A F Sbjct: 444 EQVRLPTDAVTDPSAASTIFLGE 466 >gi|110679396|ref|YP_682403.1| type II/III secretion system protein, putative [Roseobacter denitrificans OCh 114] gi|109455512|gb|ABG31717.1| type II/III secretion system protein, putative [Roseobacter denitrificans OCh 114] Length = 463 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 128/439 (29%), Positives = 219/439 (49%), Gaps = 34/439 (7%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + +++ N+ ++++ + ++ +++P AD+ S R++Y+ GK G + L+ G+ Sbjct: 43 ETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSDRSIYVLGKVPGITTLTLLDAAGQ 102 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + N+++ + D+ + LR+ + I V +D +VL G V + Q +A+EL+ Sbjct: 103 LITNVEVRVAPDLTEFKERLRQILPGEAIEVRTANDGIVLSGQVSSSQRLSKALELA--- 159 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 A + +V NL+ + G QV LKV AE+ R + KQ+ I GS + Sbjct: 160 ---------ARYAPDRVSNLMTVGGVQQVMLKVRFAEMSRGVSKQLQSSLRIGGSDAQAG 210 Query: 228 K--------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + AAD ++G F G L + +L ALE A+RTLAEP L + Sbjct: 211 IGRGIGGIPNLAAD-----SAQGAVFFDFG-LGSTQVQLLLEALETKGAVRTLAEPNLVS 264 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-- 337 +SGQ A+F +GG+ Y S SV +G+ L+F P V+ I L++ S Sbjct: 265 LSGQEANFLAGGE--YPVPVQSEDGISVDFKPFGIELNFVPRVVDGDLINLQLSAATSSI 322 Query: 338 EPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +P G++ GD + ++ R+A TTVE+ G + +AGLL+D+ +P +S +PIL Sbjct: 323 DPSNGISVGDGFTVDAFIRREASTTVEMRDGESFAIAGLLEDNFNDNITQVPWISDVPIL 382 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR-VNKIYG 453 GALFR++ + R +TE+ I T LV P L+ P D + F R + + Sbjct: 383 GALFRSTDYMRNQTELVIIITAHLVTPTRGEALALPTDRIRPPSEKDLFLNGRTIETLNA 442 Query: 454 PKEASEVEGQNYKGAIGFI 472 A EV Q++ G+ G++ Sbjct: 443 RGSAGEVAKQDFSGSYGYV 461 >gi|319941902|ref|ZP_08016223.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis 3_1_45B] gi|319804555|gb|EFW01425.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis 3_1_45B] Length = 485 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 123/406 (30%), Positives = 206/406 (50%), Gaps = 35/406 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +S+ L + L + V V+ P+ A V R + +FG G+ +++++G DG+ + Sbjct: 1 MSVSLYQGKALSFNEQIGAVFVAQPSIASYQVVGNRKVVVFGSYPGKTSLMVLGTDGRTL 60 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL- 168 N + + D++ +EM L+ +++ ++D V + G V T Q++ V + L Sbjct: 61 YNGLVEVAYDVSSMEMALKSSFPKLKLQLVALNDGVAVRGKVETAQEAANVVAFLDAMLQ 120 Query: 169 ----------------SQSGRNQYANSSSK---------KVMNLLNIAGEDQVTLKVTIA 203 Q G+ + + +++ K++N L + +QVT++V A Sbjct: 121 VNPQQAQMAAADVSAAGQEGQQEKSGAATGTGTLGARIGKIINQLTVTTPNQVTVRVRFA 180 Query: 204 EVRRDILKQIGFQH--SITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVLDRFSFETV 259 EV R + Q+GF+ S +GS G + A + S G F + RF+F ++ Sbjct: 181 EVNRKLSDQLGFKWKGSYSGSRGGITFGSADNPIISNPNNSLGHLFDPATMAARFTFGSL 240 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 A+ + LAEP LT +SG++ASF +GGQ +++ S G + DYGV+L T Sbjct: 241 FDAMASEELVSILAEPNLTVVSGETASFLAGGQIPFQS-SDGDGGFDIEFKDYGVLLSIT 299 Query: 320 PTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PT+LS RI LR++ EVSE I P + VR+A++T+EL SG + +AGLLK Sbjct: 300 PTILSGNRISLRLRPEVSERSDSNGIQFMGSTQPGFIVRRAESTIELASGQSFAIAGLLK 359 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +D IP ++ +PI+GAL R+ F R ETE+ I AT ++ P Sbjct: 360 NDFSNTVNKIPGIADLPIIGALARSKAFERGETELVIVATAYISTP 405 >gi|283852073|ref|ZP_06369347.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] gi|283572463|gb|EFC20449.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] Length = 527 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 133/460 (28%), Positives = 211/460 (45%), Gaps = 82/460 (17%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 K+S+ + K +ILQ DV V V+ P AD V+ SPR +Y+ G+ G N+ L K Sbjct: 43 KLSLTIGKSVILQSDADVSRVSVAQPEIADFVLLSPRQVYVTGRAPGVTNLTLWDKGDKI 102 Query: 109 MLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 D+ + DI L+ L + + I V D + L G VR ++ ++A+ L+E + Sbjct: 103 RAVYDLDVAPDITRLKKMLHDVLPGEPGIEVRASQDAIALAGTVRDAENMKKALTLAEVY 162 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + KKV+NL+ + G QV L+V +AE+ + +L ++G + G + Sbjct: 163 ------------APKKVVNLMAVGGVQQVMLEVRVAEMSKSVLNRMGINLNAIGDGN--- 207 Query: 228 KSFAADFGGKFVSEGGDF---------------SVKGVLDRFSFET-------------- 258 FA G S G + KG SF++ Sbjct: 208 --FAYTLIGGLTSVAGSMFNMDATQNVYQYITMTAKGADGNTSFDSSPIQLSYREFNQPS 265 Query: 259 ------------------------------VLHALERATAIRTLAEPTLTAISGQSASFT 288 VL L+ ++ LAEP L ++GQ+A F Sbjct: 266 NRATATMNQGTAVARWNTNWGGAGNTAMTAVLDVLKENGLVKILAEPNLVCLNGQTADFL 325 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVN 344 +GGQ + V S G TS+ D+GV L FTPT++ RI L++ EVS+ I + Sbjct: 326 AGGQ-IPVPVPSGLGTTSIEWKDFGVGLKFTPTIVGGDRINLQVHPEVSDLDYAHAIQLQ 384 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ R+ TTVEL +G T +AG+LK++ + + P++ IPILG LF++S+F Sbjct: 385 GSTIPAINTRRTSTTVELKNGQTFAVAGMLKEEARSTFDKYPVVGDIPILGNLFKSSQFQ 444 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +++TE+ I T L KP+ + +S P D DD + F Sbjct: 445 KDQTELVILITAHLAKPLDKKAVSLPTDSAHEPDDLEFFL 484 >gi|73542329|ref|YP_296849.1| type II and III secretion system protein:transport-associated [Ralstonia eutropha JMP134] gi|72119742|gb|AAZ62005.1| type II and III secretion system protein:Transport-associated [Ralstonia eutropha JMP134] Length = 633 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 124/417 (29%), Positives = 218/417 (52%), Gaps = 34/417 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + +G +++I LQ PV ++ + +P + S +T+Y+ G+ VG N+I+ G G Sbjct: 96 VPVGKSQLITLQEPV--KNRTLGNPNVVQATMVSAQTLYVLGRTVGTTNMIVQGRSGSCS 153 Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +++++ D L+ +L + + + IRV +D +VL G V Q + +A+++++ + Sbjct: 154 I-INVVVNADAGGLQTSLSQLLPGEPGIRVMTAADNLVLTGSVTNAQSALQAMDIAQAYA 212 Query: 169 SQSG-RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + + V+N+L++ QV L+V +AEV + +L Q+G ++ G Sbjct: 213 NAAQVGAGGDAGKKGGVLNMLSVDTPQQVMLEVKVAEVSKTLLNQLGSSVNLQGG----- 267 Query: 228 KSFAADFGGKFVS-----EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 F + GG S G F K F+F + A + + ++ LAEP L ISG Sbjct: 268 --FGSWTGGLVTSLLTGASGAIFGSKANNKPFNF--AIDAQKNDSLVKILAEPNLVTISG 323 Query: 283 QSASFTSGGQHLYKTVSSST---GATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVS 337 Q ASF +GG+ +Y V+ + GA +VT + +GV L FTPTVL+ GRI L++ EVS Sbjct: 324 QEASFLAGGK-IYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANGRIHLKVAPEVS 382 Query: 338 E--PVIGVNAGD-------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E P +G +P R+A TTV++ G + + GLL+D + + +P Sbjct: 383 ELSPTGATVSGGTLAGQSVLPLITTRRASTTVQMRDGESFAIGGLLQDSARGSLKALPGA 442 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 ++P+LG LFR++++ ++ TE+ TP LVKP+A + P D ++ D +F Sbjct: 443 GEVPVLGTLFRSTQYQQDLTELVFIITPRLVKPMATNNYPLPTDSFTTPDPFSLYFM 499 >gi|110632971|ref|YP_673179.1| type II and III secretion system protein [Mesorhizobium sp. BNC1] gi|110283955|gb|ABG62014.1| type II and III secretion system protein [Chelativorans sp. BNC1] Length = 464 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 17/410 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V + K I + K + +++ ++++ DP A + + + Y+ G+ +G + L Sbjct: 43 VSVAKDSAIRVARGKPLTVEIAEAFDEIVIGDPEIATINPLTDHSFYVLGQGLGTTGIAL 102 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + + D+ + D L T+R+ + SNI+V + +VL G +++A Sbjct: 103 YDESKRLIGTFDVEVTLDTKMLAGTIRQSVPGSNIKVTSANGRIVLSGSAPDAVAAEKAS 162 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +++ F + + V+N ++I QV L V E+ R + K++G + S Sbjct: 163 QIAARF-----------AGDEDVINTIDITSSQQVQLNVRFVEINRAVGKELGTKISAAY 211 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 +SG SF +D + GD V D FS + + ALE R LAEP L A S Sbjct: 212 VTSGGGISFNSDPRASSNTPAGDLIGGLVSDGFSIDVAIEALEDRGVARRLAEPNLIARS 271 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EP 339 G++ASF +GG+ VS GA +V+ +GV L+FTPTVLS G I L I+ EVS + Sbjct: 272 GETASFLAGGEFPIP-VSEENGAVTVSYKKFGVGLNFTPTVLSDGLIALDIEPEVSSIDT 330 Query: 340 VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G+ +P + VR+A T+++L SG + ++AGLL+ + + +P L ++P+LGAL Sbjct: 331 TSSYRVGNIAIPGFTVRRARTSIDLRSGQSFMMAGLLQSQNEINTQRVPGLGQLPVLGAL 390 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD-LSRPDDHYSVEDDAKAFFFN 446 F + + R ET++ I TP LV P+ + ++ P D D + F N Sbjct: 391 FSSKAYQRRETDLVIIVTPHLVSPIPPGNKVATPADRTKPARDGEVFLGN 440 >gi|237678812|emb|CAQ57539.1| RhcC2 protein [Bradyrhizobium elkanii] Length = 484 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 127/416 (30%), Positives = 201/416 (48%), Gaps = 27/416 (6%) Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 + V+DPT AD S T+++FGK G+ ++ + +G+ + L +++ + I L TLR Sbjct: 86 IFVADPTIADYQAPSNTTIFVFGKKSGRTSLFALNENGEALAELRVVVTQPIEDLRATLR 145 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + D I V +L G + + A +++E FL + V+N + Sbjct: 146 AEVGDYPIHVSYTPRGAILSGTAPNAEVVETAKKVTEQFLG----------AGSLVVNKI 195 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 +AG QV L V +AEV R +K + + +S P+ +F GK G Sbjct: 196 QVAGSLQVNLSVRVAEVSRSAVKDLNIHFT----ASSPNGAFL--ISGKDGGSGAAGGGG 249 Query: 249 GVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + FS VL AL LAEP LTA+SG+SASF +GG+ + + Sbjct: 250 TIGIGFSAGNTNLSAVLDALASEHLASILAEPNLTAMSGESASFLAGGEFPIPVMQDNR- 308 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTT 359 SV +GV L F PTVL+ +I +R++ EVSE + +N ++P+ R+A T Sbjct: 309 QVSVQFRQFGVSLEFVPTVLNNNQINVRVKPEVSELSSEGQVKINGMEVPALSTRRASTV 368 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VEL SG + + GL++ + P L +PILGALFR+S F + ETE+ I TP++V Sbjct: 369 VELASGQSFAIGGLIRRNFNNDIGEFPWLGDVPILGALFRSSSFQKRETELVIIVTPYIV 428 Query: 420 KPVAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +P + +S P D + DA N + + ++A G+ GFI + Sbjct: 429 RPGSNPSRMSAPSDRIAPPSDAGRILTNTLARPPKDRDAPRTSAPGLTGSAGFIIE 484 >gi|148557761|ref|YP_001265343.1| type II and III secretion system protein [Sphingomonas wittichii RW1] gi|148502951|gb|ABQ71205.1| type II and III secretion system protein [Sphingomonas wittichii RW1] Length = 526 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 138/447 (30%), Positives = 214/447 (47%), Gaps = 68/447 (15%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +SIG ++I L P+ D+ V+D ADV V S +YLFGK G+ V G + Sbjct: 51 LSIGSGQMIALSAPIS--DLFVADDKIADVQVRSTTQLYLFGKGAGETAVYATDKAGNVV 108 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + + + +I ++ L+ + ++ I ++ V+L G V + D + A +L E F+ Sbjct: 109 WSSIVRVGSNITSVDTMLKLAMPEAAITATTMNGIVLLTGTVASPSDVEEAQKLVEQFVG 168 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---- 225 + +V+N L A QV+L V IAEV R+ K IG ++ G Sbjct: 169 KE----------TQVVNRLKSAVPLQVSLHVKIAEVSREFAKSIGINLLNRDTTGGFLFG 218 Query: 226 -----------------------------PSKSFAADFG---GKFVSEG----------- 242 P+ S + F G+F++ G Sbjct: 219 VAQGRNFGSIGNLDTSAFPKLDASSLYGLPAGSLSLPFNPATGQFIAGGTAYTFDKLGKG 278 Query: 243 -GDFSVKGVLDRFSFETVLHALERATA---IRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + G+ +F + A++ A A + TLA+P LTAISG++ASF +GG+ + + Sbjct: 279 AGSGTSFGLAGKFLGMDLAAAIDLAEADGLVTTLAQPNLTAISGETASFLAGGE-IPIPL 337 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVR 354 + GA SV YGV L FTPTVL GRI +R++ EVS+ + +N +P R Sbjct: 338 AQGLGAVSVEFKQYGVSLSFTPTVLGDGRISIRVRPEVSQLTDAGSVRLNGFTIPGITTR 397 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +A+TTVEL SG ++ GLL + + P L +PILGALFR++ F R ETE+ I Sbjct: 398 RAETTVELGSGQAFMIGGLLSNAQNSNVDKAPFLGDLPILGALFRSNGFKRNETELMIVV 457 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAK 441 TP+LVKPV+ + ++ P D + Sbjct: 458 TPYLVKPVSPQQIALPTAGLRAATDGE 484 >gi|227326302|ref|ZP_03830326.1| hypothetical protein PcarcW_02904 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 479 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 128/418 (30%), Positives = 218/418 (52%), Gaps = 30/418 (7%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++ + +N+ +L + VLV+DP A + SP ++++ K+VG + + +G Sbjct: 55 EVRLTVNQGRLLHLNALPDSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNV 114 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETF 167 + + ++ E D+ L ++R ++I++E + V++ G V T QD++R ++ + + Sbjct: 115 INAIRLVSEHDLKALGERMKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAY 174 Query: 168 LSQSG------------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 +S S R ++ SS KV+N L I Q+ ++V + EV R + ++GF Sbjct: 175 ISASSGGGGQGGGGGGERLPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGF 234 Query: 216 QHSITGSSSGPSKSFAADFGGK---FVSEGGDFSV---KGVLD--RFSFETVLHALERAT 267 + + S+ S + A G + F + G F+ G L+ R +L A+ + Sbjct: 235 NWAASLSTG--SGNMTAGSGSRLNLFNATTGRFANPTDAGFLNFGRSRLSGLLTAMNQQG 292 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 LAEP LTA+SG++A+F +GG+ V + + S+ YGV+L TPT+LS R Sbjct: 293 MATVLAEPNLTAMSGETAAFAAGGE--VPIVLITNNSVSIDYKSYGVILRMTPTLLSANR 350 Query: 328 IGLRIQTEVSEPV----IGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 I L I EVSE + + G +P+ VR+ADTTVEL SG + LAG+L+ Q Sbjct: 351 ISLHIAPEVSELTDVGSVQLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTI 410 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 G+P LS +P+ G LF + ++EETE+ I AT ++V+PV DL P + D + Sbjct: 411 NGVPGLSSVPMFGRLFESESTSQEETELVIIATAYVVEPVNAGDLQTPGQGVKMLDSS 468 >gi|78357403|ref|YP_388852.1| type II/III secretion system protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219808|gb|ABB39157.1| type II/III secretion system protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 482 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 128/424 (30%), Positives = 208/424 (49%), Gaps = 50/424 (11%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + K ++L+ V+ V V+ P A V+V SP +Y+ G G + L G Sbjct: 39 VQLAAGKSVVLETASPVRRVSVAAPEVAQVLVLSPTQVYVTGVKPGGTTLTLWNAAGAVS 98 Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 DI + DIA L+ L + + ++ +I V V +++ L G V + A++++ + Sbjct: 99 HVFDIQVSPDIARLKEMLHKLLPSEKDIMVMTVGESITLAGTVSSPAHIATAMDMARMY- 157 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---- 224 + KV NL+ + G Q+ L+V +AE+RR +++++G + +S Sbjct: 158 -----------APDKVTNLMKVGGMHQIMLEVKVAEMRRSVMQRLGIDLAAAWGNSFAFT 206 Query: 225 ---------------GPSKSFAA---DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 G ++ A + G F + G ++ G LD L+ Sbjct: 207 MLNQLFTLDNQDGTIGVGRTAAVLSPNNTGVFQAPVGGMTLTGFLD---------VLKEN 257 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 ++ LAEPTL SG+ ASF +GG+ + V G ++ +YGV L FTPTVLSP Sbjct: 258 GLVKVLAEPTLVCRSGEHASFLAGGE-IPIPVPQGLGTVAIEFKEYGVTLDFTPTVLSPR 316 Query: 327 RIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 +I L+++ EVSE VI +N +P R+A TTVEL G + +AGLL+D++++ Sbjct: 317 QISLKVEPEVSELDYANVIQINGFSIPGISSRRASTTVELGDGQSFAIAGLLRDEVRETI 376 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + P L IP+LG LFR+S + + ETE+ I TP L KP+ M + P D + E Sbjct: 377 KKYPGLGDIPVLGTLFRSSSWQKNETELVIIITPRLAKPLDMTAQTLPTDGFR-EPTEYE 435 Query: 443 FFFN 446 FF Sbjct: 436 FFIQ 439 >gi|300692331|ref|YP_003753326.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07] gi|299079391|emb|CBJ52062.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07] Length = 644 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 123/421 (29%), Positives = 218/421 (51%), Gaps = 41/421 (9%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++++ + K ++Q+P V++ V +P ++ SP+T+YL G+ VG N+I+ G G Sbjct: 126 EVTVPVGKSTMVQLPEPVRNRTVGNPNVVQAMLVSPQTLYLLGQEVGTTNMIVQGRSGSC 185 Query: 109 MLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +D+ + D L TL + D+ +RV +D++VL G V +Q+ V+++ F Sbjct: 186 SV-IDVAVGADPGGLLATLHELVPDAKGVRVSAAADSLVLSGSVSDSVQAQKVVDIANAF 244 Query: 168 LSQS---------GRNQYANSS-------------SKKVMNLLNIAGEDQVTLKVTIAEV 205 +++ G Q ANS+ S +++N++ + QV L+V +AEV Sbjct: 245 VTRQTRGPSQHDQGGGQGANSATQGAITAPGAQPRSPRIINMMAVEAPQQVMLEVKVAEV 304 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + ++ Q+G ++ +S+ S SF A F+S D + + L A Sbjct: 305 SKTLIDQMGAAFNL--NSAFGSWSFGAI--ANFLSSSQDLVSFSKANNLPLKFALDAQRG 360 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTV 322 ++ LAEP+L AISGQ ASF +GG+ S TG + + +GV L FTPTV Sbjct: 361 DGLVKVLAEPSLMAISGQEASFLAGGKVFIPVPQSFTGGVTTIVLQEETFGVGLRFTPTV 420 Query: 323 LSPGRIGLRIQTEVSE--PV-IGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGL 373 + GRI L++ EVSE P + V A + +P R+A TT+++ G + + GL Sbjct: 421 MENGRINLKVAPEVSELSPTGVAVTAANTNGTTILPLITTRRASTTLQVRDGQSFAIGGL 480 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 +K ++ + +P + ++P++G+L R++ F R++TE+ TP LVKP+ + P D Sbjct: 481 IKSNVTGSLKALPGIGELPVIGSLARSTSFQRDQTELLFVVTPRLVKPLPAQ-YPMPTDS 539 Query: 434 Y 434 + Sbjct: 540 F 540 >gi|220918104|ref|YP_002493408.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955958|gb|ACL66342.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 477 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 135/464 (29%), Positives = 229/464 (49%), Gaps = 68/464 (14%) Query: 10 TMMSIFLFSSNPSVAKLPPIKEANAAVINIS-DVEIGKGKKISI--GLNKVIILQVPVDV 66 T++++ LF++ LPP++ A A+ + D +G G ++++ G N+++I+ ++ Sbjct: 5 TLLALALFAT-----PLPPVELAAGALPPLRIDRSVGAGSELALEAGQNRLLIISE--EI 57 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 V V+DP+ AD+ V + + L K+ G ++ L + ++ + +++ R++ L Sbjct: 58 GRVAVADPSVADLKVVTTNQLLLTAKSSGTTDLTLWNRSNEPLV-IALVVTRNLEPLRKQ 116 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 ++ + + + V+L G V ++ +R VE+ A +K+V N Sbjct: 117 VKDLFPGEKVTITGAGELVILSGEVSDVRIPERLVEV-------------AKLHAKQVAN 163 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIG---FQHSI----------------------TG 221 L+ ++G QV L+V AEV R L+QIG F S TG Sbjct: 164 LVKVSGNQQVQLEVRFAEVSRSGLRQIGVNLFHQSSNGEVVTGMTGRGIIPTDLGVPGTG 223 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 ++ P F F F V + F F +L LE+ +TLAEPTL +S Sbjct: 224 TAGAPPPIFRPQFNNGF-----SMFVSSLSGDFPFSAMLSLLEQNGLSKTLAEPTLVTLS 278 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--- 338 GQ A F +GG+ L + S G T V +G++L FTPTV++ I L ++ EVS+ Sbjct: 279 GQQARFVAGGE-LPIPLGGSFGQTQVEWKKFGILLDFTPTVIAGDTIHLDLKAEVSDIDQ 337 Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 I + +P R+++TT+ L G + +AGLL D ++ E +PLL IPILGAL Sbjct: 338 SLAITIGGTTIPGLTSRQSETTIRLGDGQSFAIAGLLSDRVRSQIERVPLLGSIPILGAL 397 Query: 398 FRNSRFNREETEIFIAATPFLVKPVA---------MRDLSRPDD 432 FR++++ REE+E+ + T L +PVA R+L+ P D Sbjct: 398 FRSTQYKREESELLVVVTARLARPVAPHQLPPLPTERELNHPGD 441 >gi|328953626|ref|YP_004370960.1| type II and III secretion system protein [Desulfobacca acetoxidans DSM 11109] gi|328453950|gb|AEB09779.1| type II and III secretion system protein [Desulfobacca acetoxidans DSM 11109] Length = 503 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 142/472 (30%), Positives = 216/472 (45%), Gaps = 48/472 (10%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 F M + L S+ +V P + A A + + D ++ + ++ +G +KV L+ + Sbjct: 20 FLAAMVLILGSA--AVYSPPSVLAAQALLERVKDEDLEQVIRLRVGRSKV--LRTSFTIS 75 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 + V+DP AD+++ S R +Y+ G G N+ L G + + + +E D++ L+ L Sbjct: 76 RISVADPEVADIIMISEREVYINGNAPGVTNISLWGK--RSFSSAKVTVEADVSLLKEKL 133 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + + I VE DTVVL G V + A+ L+ F + KV+NL Sbjct: 134 FKVLPKEKIAVEAAEDTVVLSGEVSGPVAQETAISLATAF---------SGGKKDKVVNL 184 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------ 235 L+I G QV + V +AE+ R + K++G + + + + Sbjct: 185 LHIGGVQQVMVAVRVAEINRSVGKEMGINFAYSNKAGNFGATLLNSLSILKNIDRNLDSV 244 Query: 236 ---GKFVSEGGDFSVK-----------GVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G V+ G S + G+ F + L++ R LAEP L S Sbjct: 245 TAPGVLVNPGVTTSSQQFSSSVNAVFGGLYGSFFWTAFFDVLKKNGLGRILAEPNLVTTS 304 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--- 338 GQ ASF +GG+ V S G TS+ +GV L FTPTVL +I LRI EVSE Sbjct: 305 GQEASFLAGGEFPIP-VPSGLGTTSIDYKKFGVGLVFTPTVLDNDKIALRINPEVSELDF 363 Query: 339 ---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + VN +P +VR+ T VE+ G T+ +AGLL D + + PLL +PILG Sbjct: 364 SSQTTVVVNNFIVPGLKVRRTTTQVEMKDGQTLAIAGLLSDQHRNVVNKYPLLGDLPILG 423 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 LFR+S F + ETE+ I TP LVK P D Y D + + R Sbjct: 424 VLFRSSSFQKSETELVILVTPHLVKSQPPGPHRLPTDKYIEPTDLEFYLLGR 475 >gi|153006805|ref|YP_001381130.1| type II and III secretion system protein [Anaeromyxobacter sp. Fw109-5] gi|152030378|gb|ABS28146.1| type II and III secretion system protein [Anaeromyxobacter sp. Fw109-5] Length = 490 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 141/473 (29%), Positives = 234/473 (49%), Gaps = 61/473 (12%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISI--GLNKVIILQVPVDVQD 68 ++ L ++ P+VA+ ++A A D E+G +++S+ G N+++I+ + Sbjct: 9 LLVTLLVAAGPAVAQ----EQAQATPALRIDREMGAAREMSLEAGQNRLLIISE--QIAR 62 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 + V++P AD+ V +P + L K VG ++ L D Q L + + + R++ L ++ Sbjct: 63 IAVANPDVADLKVVTPTQVLLTAKGVGTTDLTLWNRD-NQPLVIALQVGRNLEALRTQVK 121 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + N+++ D VVL G V ++ +R E+ A ++KV NL+ Sbjct: 122 QLFPGENVKITASGDLVVLSGEVTDVRLPERVAEV-------------ARLHAEKVANLI 168 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIG---FQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 ++G QV L+V AEV R L+++G F S + G S G+F++ + Sbjct: 169 QVSGVQQVQLQVRFAEVARGGLRELGVNLFHKSDDFRTVGGLFS-NRTLPGEFLNTNQNP 227 Query: 246 SVKGV-----------------------------LDRFSFETVLHALERATAIRTLAEPT 276 S+ G +D F F +L LE+ ++LAEPT Sbjct: 228 SIPGTGPRGLAGNGFPPDVPAPAFQNAFSVFLSRMDDFPFSVMLSLLEQNNLAKSLAEPT 287 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L A+SGQ A F +GG+ L ++SS G TSV +G+ L FTPTV+ I L ++TEV Sbjct: 288 LVALSGQGARFLAGGE-LPIPLASSFGQTSVEWKRFGIQLEFTPTVIGDA-IHLTMKTEV 345 Query: 337 SE--PVIGVN-AG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 S+ P + V AG +P R+++T++ L G + +AGL+ D I+ +P + IP Sbjct: 346 SDIDPSLAVTIAGTSVPGLTSRQSETSIRLADGQSFAIAGLVSDRIRSQVAKVPFIGSIP 405 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 ILGALFR+ F R+E+E+ + T LVKPVA +L Y + D F+ Sbjct: 406 ILGALFRSQAFQRDESELIVVVTAHLVKPVAPHELPPLPTEYEMNDPGDLPFY 458 >gi|218887827|ref|YP_002437148.1| type II and III secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758781|gb|ACL09680.1| type II and III secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 493 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 126/414 (30%), Positives = 206/414 (49%), Gaps = 53/414 (12%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + + K ++++ V +SD A VVV SP+ +Y+ GK G A + L G Sbjct: 47 VPLAVGKSMVVRTAQPAARVSMSDEAIAGVVVLSPQQVYVTGKKAGGATLTLWNGAGAIT 106 Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 DI + D+A L+ L R + D +I V V +++ L G VR+ A+++++ + Sbjct: 107 QVYDIQVTPDLAQLKEMLHRVLPDEKDIMVMAVGESITLAGTVRSAAGMTTALDVAKMY- 165 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF------------- 215 + KV NL+ + G QV L+V +AE+R+ +L+++G Sbjct: 166 -----------APDKVTNLMQVGGVHQVLLEVKVAEMRKSVLERLGIDLTYAWNNDFAFG 214 Query: 216 ----------QHSITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 Q + G GP+ + + + G F + G S+ G LD L+ Sbjct: 215 MLNQLFTLDSQKGVVGV--GPTGAVVSPNVTGMFRATSGRASLMGFLD---------VLK 263 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + ++ LAEPTL SG++A F +GG+ + V G ++ YGV L FTPTV+S Sbjct: 264 QNGLVKVLAEPTLICRSGENADFLAGGE-IPIPVPQGLGTVAIEFKKYGVTLGFTPTVVS 322 Query: 325 PGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I +R+ EVSE VI +N +P+ R+A TTVEL G + +AGLL+D++++ Sbjct: 323 DKLISMRVSPEVSELDYSNVIEINGFTIPAISTRRAATTVELADGQSFAVAGLLRDEVRE 382 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 + P+L +P+LG LFR+S + + ETE+ I TP L KP+ P D + Sbjct: 383 NIKKYPVLGDVPLLGTLFRSSNWQKNETELVIIVTPRLAKPLDGATAKLPTDGF 436 >gi|296156489|ref|ZP_06839327.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] gi|295893088|gb|EFG72868.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] Length = 599 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 126/435 (28%), Positives = 219/435 (50%), Gaps = 47/435 (10%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 ++I + K ++ V V+ V +P+ ++ SP+T+YL G +VG N+I+ G G Sbjct: 119 VTIPVGKSAMVDVREPVKSRTVGNPSIVQAMLVSPQTLYLLGSDVGTTNMIVQGRSGSCT 178 Query: 110 LNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D L+ TL + ++ I+V+ +DT+VL G V + R +EL+ F+ Sbjct: 179 I-IDVSVGADPGGLQQTLAALMPEETGIQVKAAADTLVLTGTVSDAVKADRVLELARAFV 237 Query: 169 S------QSG--------------------RNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 + Q G + ++++N++++A QV L+V + Sbjct: 238 ARPTTALQGGAPMGSGPLPVGAAPRAMGMPAPSLGGAGGERIINMMHVAAPQQVMLEVKV 297 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 AEV + ++ Q+G +I G S AD ++S G + + + A Sbjct: 298 AEVSKTLIDQLGVAANINGGIGSWSFGLLAD----YLSGGLSALTASKANNSPLKAAIDA 353 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----THDYGVVLHF 318 + ++ LAEP L AISGQ ASF +GG+ +Y V S G+ T YGV L F Sbjct: 354 QKTDQLVKILAEPNLMAISGQEASFLAGGK-VYIPVPQSNGSGGTTIVLQEEQYGVGLTF 412 Query: 319 TPTVLSPGRIGLRIQTEVSE---PVIGVNAGD------MPSYRVRKADTTVELPSGGTIV 369 TPTVL GRI L++ EVSE + V+AG+ +P R+A TT+++ G + Sbjct: 413 TPTVLEGGRINLKVSPEVSELSSTGVVVSAGNSNTTSILPLITTRRASTTLQVFDGQSFA 472 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + GLLK ++ +G+P +++P+LGALFR++ + +++TE+ TP L KP+ + Sbjct: 473 IGGLLKSNVTGSIKGLPGAAELPVLGALFRSTSYEQDKTELVFVVTPRLAKPLP-QHYPL 531 Query: 430 PDDHYSVEDDAKAFF 444 P D++ +A + Sbjct: 532 PTDNFGDASEANVYL 546 >gi|149912019|ref|ZP_01900613.1| putative membrane protein [Moritella sp. PE36] gi|149804918|gb|EDM64952.1| putative membrane protein [Moritella sp. PE36] Length = 473 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 127/420 (30%), Positives = 209/420 (49%), Gaps = 48/420 (11%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + + + + LNK ++++P + + ++ + AD + + +FGK G ++ ++ Sbjct: 24 QAQTLDVVLNKARLIELPKTAKSIFIASSSIADYQTLTNTKIMVFGKKTGSTSLYVLDAK 83 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + + + ++ L + + D+ E + + L G V T +++ V LSE Sbjct: 84 ENVIYSATVKVSHNVTELNELIHKEFPDAIFNAESTAGKLFLKGQVPTPSMAEKIVRLSE 143 Query: 166 TFLS-----------QSGRNQ---------YANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 ++S QSG Q +N + +++N L + +QV L++ IAEV Sbjct: 144 GYVSTLASTESSDSQQSGNAQSSTQPTQPAASNVDNDELINQLQVTMPNQVNLRIRIAEV 203 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKF----VSEGGDFSVKGVLDRFSFETVLH 261 R + ++G + G +G + +F ++GGK + D SV ++ Sbjct: 204 SRKVSNKLGIKWGSQGFGTG-TFAFLDNYGGKLGGVNPASWADLSV-----------IVD 251 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + LAEP LTA+SG+ ASF GG+ V S T +V +GV L F PT Sbjct: 252 ALATNGMMSVLAEPNLTAMSGEEASFLVGGEIPIPLVYSDTA--TVEYKTFGVRLDFKPT 309 Query: 322 VLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTVELPSGGTIVLAGL 373 VLS RI L++ TEVS N + P++ R+A TT+EL SG + L GL Sbjct: 310 VLSANRISLKVATEVSTVSSETNVQIGGTQGSSSFPTFVTRRASTTIELASGQSFALGGL 369 Query: 374 LKD-DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L+ DI+QL++ +PLL IP+LGALFR++ F REETE+ I AT +LV+P L P D Sbjct: 370 LQSKDIEQLQK-MPLLGDIPVLGALFRSNEFQREETELIIIATAYLVQPTRADILPLPTD 428 >gi|292491519|ref|YP_003526958.1| type II and III secretion system protein [Nitrosococcus halophilus Nc4] gi|291580114|gb|ADE14571.1| type II and III secretion system protein [Nitrosococcus halophilus Nc4] Length = 565 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 141/519 (27%), Positives = 237/519 (45%), Gaps = 91/519 (17%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 FF++ S+ L ++P L P + N +I SD+E + L K ++++ + Sbjct: 31 FFSLTSLALAQTSP----LTPRQSEN--LIIQSDIE----GDFQVPLYKSGVIELEERAK 80 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 + V +P AD+++ R +Y+ GK +G NV++ + + + +I + D+ L+ L Sbjct: 81 RISVGNPGIADILMLHSRQLYVVGKALGTTNVVVWDKNERVFASFNIEVVHDLDTLKRKL 140 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ----------------- 170 R + I V + ++L G V ++ + A +L++ FL + Sbjct: 141 HRLLPGEVIEVHSAQERIILSGQVSSVVKMKAAEDLAQGFLPECISAESNVLVRDTTQGT 200 Query: 171 -------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 SG NQ V+NL+ + G QV L++ +AE+ R +LK+ Sbjct: 201 PIIIQQGDGGRGASGANQEG-CKKGSVVNLMQVGGAHQVMLEIKVAEIARTVLKRFDSNF 259 Query: 218 SITGSSSGPSKSFAADFGG-----KFVSEGGDFSVKGVLD-------------------- 252 ++ S P K F A+ GG G + + G L+ Sbjct: 260 NVF-SFDSPWK-FGANSGGASFPNALTPSGNEVPILGSLNGEDSPIGPVVDLFQPNTPGI 317 Query: 253 ------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 +F E VL A + + LAEPTLT ++GQ A F SGG+ S Sbjct: 318 QDKGVFLSYLSSKFFLEAVLEASRQKGLAKVLAEPTLTTLTGQEAQFVSGGEFPIPVPQS 377 Query: 301 S-TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PV-IGVNAGD----MP 349 TG ++ ++GV+++F P VL GRI L++ VSE PV +GV + +P Sbjct: 378 GITGNVTIEFKEFGVIVNFLPLVLDSGRINLKLNVAVSELSQDVPVTLGVQGTENTFVIP 437 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 S R A TVEL G TI +AGL+ D++++L +P L +PILGALFR+ F +TE Sbjct: 438 SLTKRSAKATVELADGQTIGIAGLINDNLRELVTKLPGLGDVPILGALFRSQEFMSGQTE 497 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 + + TP L +P++ + + P D + D + + R+ Sbjct: 498 LVMFVTPHLARPISPQQVKLPTDSFVPPTDLEFYLMGRM 536 >gi|254510970|ref|ZP_05123037.1| bacterial type II/III secretion system protein [Rhodobacteraceae bacterium KLH11] gi|221534681|gb|EEE37669.1| bacterial type II/III secretion system protein [Rhodobacteraceae bacterium KLH11] Length = 476 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 128/463 (27%), Positives = 218/463 (47%), Gaps = 34/463 (7%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 PI +A A N+ V+ G + + + +N+ I+++ D+ +++ AD+ S RT+ Sbjct: 28 PIGDA-AWAQNLRVVKKGTAESLDVPVNRAIVVESEQPFADISIANAGIADISTLSDRTI 86 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 Y+ G+ G + + G + N+ + + D+ + LR+ + + I V +D +VL Sbjct: 87 YVLGRAPGITTLTMFDGAGNLITNVRVRVSPDVTEFKERLRQILPNEQIEVRTANDGIVL 146 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + RA+EL+E + + ++V NLLN+ G QV LKV AE+ R Sbjct: 147 SGTVSSSARLARALELAERY------------APERVSNLLNVGGVQQVMLKVRFAEMNR 194 Query: 208 DILKQIG-----------FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFS 255 + K + + + + + A + FV + G Sbjct: 195 SVAKNLSASLGFGGGDATGGFNSLNNQGALNNALANNI--PFVQTNSGAVLFGFGAGSTQ 252 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 +L ALE +R+LAEP L+A+SGQ A F +GG+ + V G ++ +GV Sbjct: 253 VRLLLEALETKGLVRSLAEPNLSALSGQEAEFLAGGE-VPIPVPQGDGVVAIEYRQFGVQ 311 Query: 316 LHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 L F P V+ I L + VS +N +PS+ R+ TT+EL G + +A Sbjct: 312 LLFVPRVVDGNLINLELGASVSSIDQSSDFTINGDSVPSFITRQTRTTIELRDGESFAIA 371 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL++DD L +P L +P+LGALFR++++ RE++E+ I T LV P L+ P Sbjct: 372 GLIQDDFTDLNTQVPWLGDVPVLGALFRSAQYQREQSELIIIITAHLVSPTRGEALALPT 431 Query: 432 DHYSVEDDAKAFFFNRVNKI--YGPKEASEVEGQNYKGAIGFI 472 D + F +V + G ASEV Q++ + G++ Sbjct: 432 DRVKPPSEFDLFVNGKVARTERAGNGAASEVAKQDFGTSYGYV 474 >gi|254229332|ref|ZP_04922749.1| putative phospholipid-binding domain family [Vibrio sp. Ex25] gi|262393417|ref|YP_003285271.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio sp. Ex25] gi|151938140|gb|EDN56981.1| putative phospholipid-binding domain family [Vibrio sp. Ex25] gi|262337011|gb|ACY50806.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio sp. Ex25] Length = 487 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 128/452 (28%), Positives = 216/452 (47%), Gaps = 62/452 (13%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 ++++ + GK +++ ++ L + + V + DP D++V ++L GK +G Sbjct: 16 LSVNAATVQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNELFLIGKKLGT 75 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 NV + G+ + ++ + D+ L+ L +F+ D NI V + VVL G+V + Q+ Sbjct: 76 TNVSVWDRRGRLIEQFNVEVTHDLNTLKSKLYQFLPDENIEVHSAQEKVVLRGLVSSQQN 135 Query: 157 SQRAVELSETF-LSQSGRNQYANSSSKKVM--NLLNIAGEDQVTLKVTIAEVRRDILKQI 213 AV+++ETF L ++ + +S M NLL+I G QVTL+VT+AEV+R ++++ Sbjct: 136 MDTAVKIAETFALGEAADEEDDSSKDDDSMVINLLSIGGAQQVTLEVTVAEVQRTLVRR- 194 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-----------------------GV 250 F ++F F GDF+ G Sbjct: 195 ----------------FDSNF--HFFQRSGDFTWGGTTAGGGIDGIGPILNVPTVEDFGF 236 Query: 251 LDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 L F F L ++ + LAEP+LTA+SG A F +GG+ + + Sbjct: 237 LGSFIDSNTLFTFALDVAKQNGVAKVLAEPSLTALSGTQAEFVAGGE--FPIPVPNEDGI 294 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD------MPSYRVRK 355 ++ +YGV L F P +LS RI L++ VSE V+ N + +P R Sbjct: 295 TIDYKEYGVQLDFVPFILSDKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRS 354 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A TT+EL G TI +AGLL ++ + + +GIP S +P+LG LF++ F ETE+ I T Sbjct: 355 AGTTIELADGQTIGIAGLLSENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVT 414 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 P L P+ R ++ P D + +D + + + Sbjct: 415 PRLATPIDRRRITLPTDGFVAPNDVEFYLLGK 446 >gi|332162954|ref|YP_004299531.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667184|gb|ADZ43828.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 410 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 117/389 (30%), Positives = 199/389 (51%), Gaps = 31/389 (7%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +++ ++ V VS AD + ++ ++ K G A IL + + IL++ Sbjct: 1 MIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDN 60 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ-------RAVELSETFLSQS 171 I +R +S+I + + D+ +L G V T + + A+ +T S S Sbjct: 61 TITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIGSEKTIASNS 120 Query: 172 -----GRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 G NQY NS +V+N + + G +QV +K+TIAEV +D + IG S G+ SG Sbjct: 121 KKDSDGNNQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSG 180 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + F + KF ++G ++HA+ + R LAEP L+ +SG+SA Sbjct: 181 SFQFFKLNGSNKFNAKG-------------ISALVHAINDDSIARVLAEPNLSVLSGESA 227 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGV 343 SF GG+ V+++ +T +T +G+ L+ V + RI +++ EVS + V + Sbjct: 228 SFLVGGE--LPLVNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNI 285 Query: 344 NAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + GD PS+R RKA TT+EL G + +L GL+ ++ + IP + IPILGA FRN+ Sbjct: 286 DGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFRNAE 345 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPD 431 + +TE+ + AT LV+PV+ +++ P+ Sbjct: 346 TRKNQTELVVVATVNLVRPVSEKEVELPN 374 >gi|269966892|ref|ZP_06180965.1| Flp pilus assembly protein [Vibrio alginolyticus 40B] gi|269828559|gb|EEZ82820.1| Flp pilus assembly protein [Vibrio alginolyticus 40B] Length = 487 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 128/442 (28%), Positives = 212/442 (47%), Gaps = 62/442 (14%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 GK +++ ++ L + + V + DP D++V ++L GK +G NV + G Sbjct: 26 GKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNELFLIGKKLGTTNVSVWDRRG 85 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + ++ + D+ L+ L +F+ D NI V + VVL G+V + Q+ AV+++ET Sbjct: 86 RLIEQFNVEVTHDLNTLKSKLYQFLPDENIEVHSAQEKVVLRGLVSSQQNMDTAVKIAET 145 Query: 167 F-LSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 F L ++ + +S + V+NLL+I G QVTL+VT+AEV+R ++++ Sbjct: 146 FALGEAADEEDDSSKDDESMVINLLSIGGAQQVTLEVTVAEVQRTLVRR----------- 194 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVK-----------------------GVLDRF-----S 255 F ++F F GDF+ G L F Sbjct: 195 ------FDSNF--HFFQRSGDFTWGGTTAGGGIDGIGPILNVPTVEDFGFLGSFIDSNTL 246 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L ++ + LAEP+LTA+SG A F +GG+ + + ++ +YGV Sbjct: 247 FTFALDVAKQNGVAKVLAEPSLTALSGTQAEFVAGGE--FPIPVPNEDGITIDYKEYGVQ 304 Query: 316 LHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSG 365 L F P +LS RI L++ VSE V+ N + +P R A TT+EL G Sbjct: 305 LDFVPFILSDKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADG 364 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 TI +AGLL ++ + + GIP S +P+LG LF++ F ETE+ I TP L P+ R Sbjct: 365 QTIGIAGLLSENARNVANGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRR 424 Query: 426 DLSRPDDHYSVEDDAKAFFFNR 447 ++ P D + +D + + + Sbjct: 425 RITLPTDGFVAPNDVEFYLLGK 446 >gi|167584957|ref|ZP_02377345.1| type II and III secretion system protein [Burkholderia ubonensis Bu] Length = 536 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 123/408 (30%), Positives = 213/408 (52%), Gaps = 19/408 (4%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ G G Sbjct: 89 VSVPLGKSMLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQGKSGACR 148 Query: 110 LNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D L+ +L + + + +I V +DT+VL G V + Q +Q+A +++ + Sbjct: 149 I-IDVAVGADAGGLQASLGQLMPGERDIHVSTAADTIVLAGNVSSAQAAQQAAAIAKAYA 207 Query: 169 SQSGRNQYANSSSK-KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + G ++ V+N+L + QV L+V +AEV + ++ Q+G +I G S Sbjct: 208 NAGGGGANGDNKGGGTVLNMLTVTAPQQVMLEVKVAEVSKTLINQLGSAFNIQGGFGSWS 267 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 + ++ S G + K + F + A ++ LAEP L ISGQ A+F Sbjct: 268 GALVSNLLAGVAS--GIVANKA--NNRPFSVAVDAQNTDNLVKILAEPNLVTISGQEATF 323 Query: 288 TSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGV 343 +GG+ S+TG + T ++GV L F PTVLS GRI L++ EVSE GV Sbjct: 324 LAGGKIFIPVPQSNTGGGTTITLQEEEFGVALRFLPTVLSNGRISLKVAPEVSELSQTGV 383 Query: 344 --------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 A +P R+A TTV++ G + + GL+KD+ + +P + +IP+LG Sbjct: 384 TLTATNVAGASILPLITTRRASTTVQMADGESFAIGGLIKDNATGSLKAVPGIGEIPVLG 443 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 AL R++ F ++ TE+ TP LVKP+ D+ P D ++ ++ F Sbjct: 444 ALARSTSFQQDRTELIFIITPHLVKPLQTADVPLPTDSFTRTNEVDVF 491 >gi|294140774|ref|YP_003556752.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12] gi|293327243|dbj|BAJ01974.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12] Length = 484 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 124/416 (29%), Positives = 210/416 (50%), Gaps = 20/416 (4%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 IL + V V V +P D+ + +Y+ GK +G N+++ + + + +DI I Sbjct: 49 ILNLKQTVHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIMIWDENERLVDVIDIEITH 108 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D+ L++ L F+ + V+ +++ G +Q AVEL++ + + ++ N Sbjct: 109 DLNGLKLRLHEFLPGEKLGVQTSQGHLLISGQASNLQKMNTAVELAKAYADAASVSK-VN 167 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ V+N++ + G+ QV L+V IAEV+R++ +Q + I G S S A Sbjct: 168 ST---VLNMMTVGGDHQVMLEVVIAEVQREVARQFDSKFFIFGQGSKLSGGTAGGGATFD 224 Query: 239 VSEGGDFSVKGVLDRFSFETVL--HALERATA---IRTLAEPTLTAISGQSASFTSGGQH 293 + S +G R+ + +L AL+ A + LAEP +TA+SGQSA F SGG+ Sbjct: 225 LDPAAAISNRGFFARYINDNLLMNFALDVAKQNGLAKVLAEPNVTALSGQSAEFLSGGEF 284 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD-- 347 V + G+T++ D+GV + F PTVL G+I L + VSE + ++ G Sbjct: 285 PIP-VPGTNGSTTIQYRDFGVGVRFVPTVLDSGQINLNLNVIVSEVSNANSVSLSGGGSN 343 Query: 348 ----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +PS R TTVEL G TI ++GL+ D +++ + +P L IPILG LF + F Sbjct: 344 ATLIVPSIVKRTTSTTVELADGQTIAISGLINDTLRENIDKLPGLGDIPILGQLFTSKSF 403 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 ++E+ I TP LV+P + +S P D + + D + + +++ E SE Sbjct: 404 KSGQSELIILVTPRLVRPFNRKHISLPTDDFVLPSDMEFYLLGKMSHKKQDSERSE 459 >gi|227114876|ref|ZP_03828532.1| hypothetical protein PcarbP_18025 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 479 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 126/408 (30%), Positives = 212/408 (51%), Gaps = 30/408 (7%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +LQ+ VLV+DP A + SP ++++ K+VG + + +G + + ++ E Sbjct: 65 LLQLNELPDSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEH 124 Query: 119 DIAHLEMTLRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------ 171 D+ L ++R ++I++E + V++ G V T QD++R ++ +T++ S Sbjct: 125 DLKALGERMKREFPGADIQLEPSIPSGVIVRGSVDTPQDAKRVIDSIQTYIKSSVGGGQG 184 Query: 172 ------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 R ++ +S V+N L I Q+ ++V + EV R + ++GF + + S+ Sbjct: 185 GGGGGGERLPGSSETSGNVVNQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTG- 243 Query: 226 PSKSFAADFGGK---FVSEGGDFSV---KGVLD--RFSFETVLHALERATAIRTLAEPTL 277 S + A G + F + G F+ G L+ R +L A+ + LAEP L Sbjct: 244 -SGNMTAGSGSRLNLFNATTGRFANPTDAGFLNFGRSRLSGLLTAMNQQGMATVLAEPNL 302 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TA+SG++A+F +GG+ V + + S+ YGV+L TPT+LS RI L I EVS Sbjct: 303 TAMSGETAAFAAGGE--VPIVLITNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVS 360 Query: 338 EPV----IGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 E + + G +P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS +P Sbjct: 361 ELTDVGSVQLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVP 420 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 + G LF + ++EETE+ I AT ++V+PV DL P + D + Sbjct: 421 MFGRLFESEATSQEETELVIIATAYVVEPVNAGDLQTPGQGVKMLDSS 468 >gi|85707702|ref|ZP_01038768.1| type II secretion system protein [Erythrobacter sp. NAP1] gi|85689236|gb|EAQ29239.1| type II secretion system protein [Erythrobacter sp. NAP1] Length = 576 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 137/456 (30%), Positives = 218/456 (47%), Gaps = 69/456 (15%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 ISIG +++ QVP + DV V++ ADV + S R +Y+FG++ G+ + G+ + Sbjct: 70 ISIGRGELV--QVPGTMTDVFVANENVADVQIKSQRQLYVFGRSGGETTIYASDARGEVI 127 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + ++ + +I ++ L + ++ + V M ++TV+L G V +D+ A L FL Sbjct: 128 FSANVRVGSNIGSIDQMLALAMPEAQVNVATMGTNTVLLTGTVAAPEDAAEAERLVTAFL 187 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI--------------- 213 + V+ L A QV L+V AEV R +++ + Sbjct: 188 GEQ----------ANVITRLKTATPLQVNLQVKFAEVSRSLVRAVSGNLTTFDASTGGFR 237 Query: 214 -------------------------GFQHSITGSSSGPSKSFA-ADFGGK---FVSEGGD 244 G Q+ + G P+ D G F G D Sbjct: 238 GAVGTGRTLGAGEFDFRNGPLGVGSGVQNPVVGPFIDPTTGLPILDANGNPLTFTGPGID 297 Query: 245 FSVKGV----LDRFSFETVLHAL---ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G L R L AL ER I T+++P LTA+SG++A+F +GG+ Sbjct: 298 SGTAGTTIAGLGRLFGLDALGALDLSERLGLITTISQPNLTALSGETATFLAGGEFPIP- 356 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRV 353 +S G ++ ++GV L +TPTVLS GRI +R++ EVSE + +N +P+ + Sbjct: 357 ISQGLGNVAIEYRNFGVSLAYTPTVLSNGRISIRVRPEVSELSSQGAVTLNGFQVPALTI 416 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+ +TTVEL SG + ++AGLL ++ Q + P L +PILG LFR+ F R ETE+ I Sbjct: 417 RRTETTVELGSGQSFMIAGLLSNNAQNALDKAPGLGDVPILGNLFRSRDFRRGETELVIV 476 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 TP+LVKPV D++ P D Y ++ + F R N Sbjct: 477 VTPYLVKPVNASDIALPTDGYHSANELEQFIGFRDN 512 >gi|207728106|ref|YP_002256500.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum MolK2] gi|206591351|emb|CAQ56963.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum MolK2] Length = 626 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 121/433 (27%), Positives = 220/433 (50%), Gaps = 44/433 (10%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++++ + K ++Q+P V++ V +P ++ SP+T+YL G+ VG N+I+ G G Sbjct: 99 EVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVSPQTLYLLGQEVGTTNMIVQGRSGSC 158 Query: 109 MLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +D+ + D L+ TLR + + N++V +D++VL G V +Q+ ++++ F Sbjct: 159 SV-IDVSVGADPGGLQSTLRTLMPGAKNVQVSAAADSLVLGGSVSDSVQAQKVLDIANAF 217 Query: 168 LSQSGRNQY----------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 + + R A S +++N++ + QV L+V +AEV Sbjct: 218 VMRQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPRSPRIINMMAVEAPQQVMLEVKVAEV 277 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + ++ Q+G ++ G+ S +F A F+S D + + L A + Sbjct: 278 SKTLIDQMGSALNVNGAFG--SWTFGAL--ANFLSGSNDIVNFSKNNHLPLKFALDAQKG 333 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTP 320 ++ LAEP+L AISGQ ASF +GG+ ++ VS V T +GV L FTP Sbjct: 334 DGLVKVLAEPSLMAISGQEASFLAGGK-VFIPVSQGAATNGVATIILQEETFGVGLRFTP 392 Query: 321 TVLSPGRIGLRIQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLA 371 TV+ GRI L++ EVSE V N+ + +P R+A TT+++ G + + Sbjct: 393 TVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSILPLITTRRASTTLQVHDGQSFAIG 452 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K+++ + IP + ++P++GAL R++ F +++TE+ TP LVKP+ + P Sbjct: 453 GLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQTELVFVVTPHLVKPLPAQ-YPLPT 511 Query: 432 DHYSVEDDAKAFF 444 D + + A+ F Sbjct: 512 DSFGRANPAEIFL 524 >gi|318604223|emb|CBY25721.1| type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia enterocolitica subsp. palearctica Y11] Length = 410 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 116/389 (29%), Positives = 198/389 (50%), Gaps = 31/389 (7%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +++ ++ V VS AD + ++ ++ K G A IL + + IL++ Sbjct: 1 MIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDN 60 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ-------RAVELSETFLSQS 171 I +R +S+I + + D+ +L G V T + + A+ +T S S Sbjct: 61 TITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIGSEKTIASNS 120 Query: 172 -----GRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 G NQY NS +V+N + + G +QV +K+TIAEV +D + IG S G+ SG Sbjct: 121 KKDSDGNNQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSG 180 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + F + KF ++G ++HA+ + R LAEP L+ +SG+SA Sbjct: 181 SFQFFKLNGSNKFNAKG-------------ISALVHAINDGSIARVLAEPNLSVLSGESA 227 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGV 343 SF GG+ V+++ +T +T +G+ L+ V + RI +++ EVS + V + Sbjct: 228 SFLVGGE--LPLVNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNI 285 Query: 344 NAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + GD PS+R RKA TT+EL G + +L GL+ ++ + IP + IPILGA F N+ Sbjct: 286 DGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFSNAE 345 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPD 431 + +TE+ + AT LV+PV+ +++ P+ Sbjct: 346 TRKNQTELVVVATVNLVRPVSEKEVELPN 374 >gi|260463894|ref|ZP_05812090.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259030269|gb|EEW31549.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 481 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 134/420 (31%), Positives = 211/420 (50%), Gaps = 40/420 (9%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 K++ G K II +++ DP A+V + ++ Y+ G N+G + L D KQ Sbjct: 55 KVAKGKPKTIITSAAF--YQIVIGDPEIANVNPLTDKSFYVLGNNLGTTGIALF-DDKKQ 111 Query: 109 ML-NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 ++ +DI + D L T+R + D+ I+V + VVL G +++A +++ F Sbjct: 112 LVGTVDIEVTLDTDELANTIRASVPDAKIKVGSANGRVVLSGEADDAVAAEKANKIATRF 171 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 S +++V+N +NI+ QV L V E+ R + +G ++ S Sbjct: 172 -----------SGNEEVINSVNISSSQQVQLNVRFVEINRQAGQDLGAKY---------S 211 Query: 228 KSFAADFGGKFVS-EGGDFSVKG---VLDRF-----SFETVLHALERATAIRTLAEPTLT 278 +FA FGG+ VS E G G ++ R S + + ALE R LAEP L Sbjct: 212 ANFAYGFGGRDVSLEPGTVPAAGTGEIIGRLLSNGVSIDIAIKALEERGLARRLAEPNLI 271 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS- 337 A SG++ASF +GG+ VS G SV+ YGV L F PTVL G + L I EVS Sbjct: 272 ARSGETASFLAGGEFPIP-VSEENGKISVSYKKYGVSLDFKPTVLKDGLVSLDIAPEVSS 330 Query: 338 -EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + N G++ P + VR+A T+V+L +G + ++AGLL+ IP L K+P+L Sbjct: 331 IDASASYNIGNISVPGFIVRRARTSVDLKNGQSFMIAGLLQSQNDITTSRIPGLGKMPVL 390 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 GALF + + R ET++ I TP+LVKPV + ++ P + +A +F N ++ G Sbjct: 391 GALFSSKSYQRRETDLVIIVTPYLVKPVDPSKKMAEPTNGTQPASNAD-YFLNNTEEVKG 449 >gi|207744158|ref|YP_002260550.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum IPO1609] gi|206595562|emb|CAQ62489.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum IPO1609] Length = 626 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 121/433 (27%), Positives = 219/433 (50%), Gaps = 44/433 (10%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++++ + K ++Q+P V++ V +P ++ SP+T+YL G+ VG N+I+ G G Sbjct: 99 EVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVSPQTLYLLGQEVGTTNMIVQGRSGSC 158 Query: 109 MLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +D+ + D L+ TLR + + N++V +D++VL G V +Q+ ++++ F Sbjct: 159 SV-IDVSVGADPGGLQSTLRTLMPGAKNVQVSAAADSLVLGGSVSDSVQAQKVLDIANAF 217 Query: 168 LSQSGRNQY----------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 + R A S +++N++ + QV L+V +AEV Sbjct: 218 VMHQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPRSPRIINMMAVEAPQQVMLEVKVAEV 277 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + ++ Q+G ++ G+ S +F A F+S D + + L A + Sbjct: 278 SKTLIDQMGSALNVNGAFG--SWTFGAL--ANFLSGSNDIVNFSKNNHLPLKFALDAQKG 333 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTP 320 ++ LAEP+L AISGQ ASF +GG+ ++ VS V T +GV L FTP Sbjct: 334 DGLVKVLAEPSLMAISGQEASFLAGGK-VFIPVSQGAATNGVATIILQEETFGVGLRFTP 392 Query: 321 TVLSPGRIGLRIQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLA 371 TV+ GRI L++ EVSE V N+ + +P R+A TT+++ G + + Sbjct: 393 TVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSILPLITTRRASTTLQVHDGQSFAIG 452 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K+++ + IP + ++P++GAL R++ F +++TE+ TP LVKP+ + P Sbjct: 453 GLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQTELVFVVTPHLVKPLPAQ-YPLPT 511 Query: 432 DHYSVEDDAKAFF 444 D + + A+ F Sbjct: 512 DSFGRANPAEIFL 524 >gi|299067807|emb|CBJ39018.1| pilus assembly secretion protein [Ralstonia solanacearum CMR15] Length = 635 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 131/442 (29%), Positives = 231/442 (52%), Gaps = 54/442 (12%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++++ + K ++Q+ V+ V +P ++ SP+T+YL G++VG N+I+ G G Sbjct: 97 EVTVPVGKSTMVQLSEPVRSRTVGNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSC 156 Query: 109 MLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +D+ + D L+ TL + + S +RV +D++VL G V +Q+ ++++ F Sbjct: 157 SV-IDVSVGADPGGLQATLHALMPEASRVRVSAAADSLVLGGTVSDSVQAQKIMDIANAF 215 Query: 168 L-------SQSGR--------------NQYANSSS----------KKVMNLLNIAGEDQV 196 + +QSG+ A +SS +++N++++ QV Sbjct: 216 VMRETRGPAQSGQAGTMGMQGMTAMSTGNAATASSGSGSGEAVRNPRIINMMSVEAPQQV 275 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-FSVKGVLDRFS 255 L+V +AEV + ++ Q+G ++ GS S +F A F+S D FSV ++ Sbjct: 276 MLEVKVAEVSKTLINQMGAALNLNGSFG--SWTFGAL--ANFLSGAPDIFSVDKA-NKLP 330 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHD-- 311 F+ L A + ++ LAEP L AISGQ ASF +GG+ +Y V S +G TS+ + Sbjct: 331 FQLKLDAQKGDGLVKVLAEPNLMAISGQEASFLAGGK-VYIPVPQSFGSGTTSILLQEET 389 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSE--PV-IGVNAGD------MPSYRVRKADTTVEL 362 +GV L FTPTVL GRI L++ EVSE P + V A + +P R+A TT+++ Sbjct: 390 FGVGLRFTPTVLENGRINLKVAPEVSELSPTGVAVTAPNVSGTSILPLITTRRASTTLQV 449 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G + + GL+K +I + IP + ++P++GAL R++ F +++TE+ TP LVKP+ Sbjct: 450 HDGQSFAIGGLIKSNITGSLKAIPGVGELPVIGALARSTSFQQDQTELLFVVTPHLVKPL 509 Query: 423 AMRDLSRPDDHYSVEDDAKAFF 444 + P D + + + + Sbjct: 510 PA-NYPMPTDSFGPVNQGEVYL 530 >gi|309780760|ref|ZP_07675501.1| type II and III secretion system protein:Transport-associated [Ralstonia sp. 5_7_47FAA] gi|308920442|gb|EFP66098.1| type II and III secretion system protein:Transport-associated [Ralstonia sp. 5_7_47FAA] Length = 603 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 119/409 (29%), Positives = 214/409 (52%), Gaps = 41/409 (10%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++++ + K ++Q+P V+ V +P ++ SP+T+Y+ G VG N+I+ G G Sbjct: 97 EVTVPVGKSTMVQLPEPVRSRTVGNPNVVQAMLVSPQTLYVLGLEVGSTNMIVQGRSGSC 156 Query: 109 MLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +D+ + D L+ TLR+ + ++ N++V +D++VL G V +Q+ V+++ F Sbjct: 157 SV-VDVAVGADPGGLQSTLRKLMPEARNVQVSAAADSLVLGGSVSDSVQAQKVVDIANAF 215 Query: 168 L---------------SQSGRNQY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 + Q G+ + A S +++N++ + QV L+V +AEV + Sbjct: 216 VMRRTRGPNEGDQNATGQGGQQLHTAGPGAPLRSPRIINMMTVEAPQQVMLEVKVAEVSK 275 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 ++ Q+G + G+ S SF A F+S D + + L A + Sbjct: 276 TLIDQMGAAFNANGAFG--SWSFGAI--ANFLSGSSDIVNFSKANHLPLKFALDAQKGDG 331 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTV 322 ++ LAEP+L AISGQ ASF +GG+ ++ V+ A V T +GV L FTPTV Sbjct: 332 LVKVLAEPSLMAISGQEASFLAGGK-VFIPVAQGAAANGVATIVLQEETFGVGLRFTPTV 390 Query: 323 LSPGRIGLRIQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGL 373 + GRI L++ EVSE V N+ + +P R+A TT+++ G + + GL Sbjct: 391 MENGRINLKVSPEVSELSPTGVAVTAPNSNNTSILPLITTRRASTTLQVHDGQSFAIGGL 450 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +K++I + +P + ++PI+G+L R++ F +++TE+ TP LVKP+ Sbjct: 451 IKNNITGSLKALPGIGELPIIGSLARSTSFQQDQTELLFVVTPRLVKPL 499 >gi|87199101|ref|YP_496358.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87134782|gb|ABD25524.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 539 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 134/459 (29%), Positives = 223/459 (48%), Gaps = 63/459 (13%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + ++I + + ++ VP + DV V+D ADV V S +Y+FGK G+ + G Sbjct: 52 RTVTISIGRGELVTVPGRMADVFVADERVADVQVKSTNQLYVFGKAGGETTIYASNAKGD 111 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + + ++ + ++ ++ L + ++ I V +++TV+L G V +D+ A L + F Sbjct: 112 VVWSANVRVGNNLDSIDQMLHLAMPEARINVATMNNTVLLTGTVAAPEDAAEAERLVKAF 171 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF------------ 215 + + V++ L +A QV+L V AEV R +++ +G Sbjct: 172 VGEK----------TNVISRLKMATPLQVSLHVKFAEVSRSLVRTLGVNLTTIDGTGGIK 221 Query: 216 ----QHSITGS----------------------SSGPSKSFAADFGGKFV--SEGGDFSV 247 Q S TGS +G + ++ + G S G + Sbjct: 222 FGIGQGSTTGSVATNRNLPFGVGTSSTSGYILDPTGATSNYVSATGTSVAASSSGTTIAG 281 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 G L L A E + TL+EP LTAISG++A F +GG++ VS G TS+ Sbjct: 282 MGKLLGLDLLAALDAGETIGLVTTLSEPNLTAISGETAEFLAGGEYPIP-VSQGLGTTSI 340 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELP 363 YGV L +TPTVL+ GRI +R++ E SE + +++ ++P+ VR+A+TTVEL Sbjct: 341 EYKKYGVSLAYTPTVLANGRISIRVRPEASELSSTGALKLDSVEIPALTVRRAETTVELG 400 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SG + ++AGLL++ Q +P IPILG+LFR++ + + ETE+ I TP+LV PV Sbjct: 401 SGQSFMIAGLLQNGAQNALTKMPGAGDIPILGSLFRSTSYKKGETELVIVVTPYLVNPVN 460 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 D+ P D + N + ++ G E+ V G Sbjct: 461 ANDIKLPTDGFQSP--------NEIQRLLGHMESDGVTG 491 >gi|193782542|ref|NP_435332.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021] gi|307319126|ref|ZP_07598556.1| type II and III secretion system protein [Sinorhizobium meliloti AK83] gi|193072997|gb|AAK64744.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021] gi|306895233|gb|EFN25989.1| type II and III secretion system protein [Sinorhizobium meliloti AK83] Length = 466 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 128/455 (28%), Positives = 225/455 (49%), Gaps = 24/455 (5%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG--KKISIGLNKVIILQ 61 + R+ ++ + F F VA I + A N VEI + I + K + ++ Sbjct: 1 MTRSRGSLFAFFCFV----VALCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIR 56 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 ++++ DP A V + R+ Y+ G +G +V + + + +DI + D Sbjct: 57 AVQRFDEIVIGDPEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTK 116 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L T+R+ + S+++V + +VL G + +A +++ F + Sbjct: 117 LLSSTIRQSVPGSSVKVTSANGRIVLSGSATDAVAATQAEQIASRF-----------AGD 165 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++V+N + I QV L V E+ RD+ K++G Q S + S S F + + Sbjct: 166 EEVINSIKITSSQQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSPRATSNTP 225 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + +S + + ALE R LAEP L A SG+++SF +GG+ +S Sbjct: 226 AGSLIGSLIGEGYSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIP-ISEQ 284 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDM--PSYRVRKAD 357 G +V+ +GV L FTPTVLS G I L I+ EVS + G++ P + VR+A Sbjct: 285 DGTITVSYKKFGVGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRAR 344 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T+V+L SG + ++AGLL+ + + + +P L ++PILGALF + + R ET++ I TP Sbjct: 345 TSVDLKSGQSFMIAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPH 404 Query: 418 LVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 LVKP+ ++ ++ P D +A+ FF ++++ Sbjct: 405 LVKPIDPLKKVASPSDRTKRPTEAE-FFLGNIDEV 438 >gi|241662165|ref|YP_002980525.1| type II and III secretion system protein [Ralstonia pickettii 12D] gi|240864192|gb|ACS61853.1| type II and III secretion system protein [Ralstonia pickettii 12D] Length = 603 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 119/409 (29%), Positives = 214/409 (52%), Gaps = 41/409 (10%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++++ + K ++Q+P V+ V +P ++ SP+T+Y+ G VG N+I+ G G Sbjct: 97 EVTVPVGKSTMVQLPEPVRSRTVGNPNVVQAMLVSPQTLYVLGLEVGSTNMIVQGRSGSC 156 Query: 109 MLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +D+ + D L+ TLR+ + ++ N++V +D++VL G V +Q+ V+++ F Sbjct: 157 SV-VDVAVGADPGGLQSTLRKLMPEARNVQVSAAADSLVLGGSVSDSVQAQKVVDIANAF 215 Query: 168 L---------------SQSGRNQY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 + Q G+ + A S +++N++ + QV L+V +AEV + Sbjct: 216 VMRRTRGPNEGEQNATGQGGQQLHTAGPGAPLRSPRIINMMTVEAPQQVMLEVKVAEVSK 275 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 ++ Q+G + G+ S SF A F+S D + + L A + Sbjct: 276 TLIDQMGAAFNANGAFG--SWSFGAI--ANFLSGSSDIVNFSKANHLPLKFALDAQKGDG 331 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTV 322 ++ LAEP+L AISGQ ASF +GG+ ++ V+ A V T +GV L FTPTV Sbjct: 332 LVKVLAEPSLMAISGQEASFLAGGK-VFIPVAQGAAANGVATIVLQEETFGVGLRFTPTV 390 Query: 323 LSPGRIGLRIQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGL 373 + GRI L++ EVSE V N+ + +P R+A TT+++ G + + GL Sbjct: 391 MENGRINLKVSPEVSELSPTGVAVTAPNSNNTSILPLITTRRASTTLQVHDGQSFAIGGL 450 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +K++I + +P + ++PI+G+L R++ F +++TE+ TP LVKP+ Sbjct: 451 IKNNITGSLKALPGIGELPIIGSLARSTSFQQDQTELLFVVTPRLVKPL 499 >gi|89899603|ref|YP_522074.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89344340|gb|ABD68543.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 571 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 128/418 (30%), Positives = 207/418 (49%), Gaps = 69/418 (16%) Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNI 136 DV++ +P +YL GK +G NV+++ DG D+++ D L+ + + + + I Sbjct: 124 DVLLLAPTEVYLLGKTIGTTNVVMLDRDGT-CTAFDVVVAMDTMALQAVIGQLLPIEKEI 182 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFL-SQSGRNQYANSSSKKVMNLLNIAGEDQ 195 +V D++VL GMV + R +L+ ++ Q G Q S+++V+N+L + Q Sbjct: 183 KVTSAFDSIVLSGMVSDTEALTRVTDLANAYVRGQDGGGQ----SNQRVVNMLEVGAPQQ 238 Query: 196 VTLKVTIAEVRRDILKQIGF-----------------------------QHSITGSSSGP 226 V L+V +AE+ + +L Q G Q S TG+S P Sbjct: 239 VMLEVKVAEISKSLLDQFGINFSRAYVPGDGSMMRFLSGIFGGAVGAMGQISGTGASGVP 298 Query: 227 SKSFAADFGGKFV---SEGGDFSVK--GVLDRFSFET-------------VLHALERATA 268 S A GG + GG+ +V R ++ T L+ + Sbjct: 299 FSSVDAVIGGTVPIAGASGGNVTVTYDATTGRPTYTTSYGTVPGRGVSNATLNMQKNDGL 358 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----HDYGVVLHFTPTVLS 324 ++ LAEPT+ AISGQ+ SF +GG+ ++ VS G+ TT ++GV + FTPTVL Sbjct: 359 VKVLAEPTIMAISGQTGSFLAGGK-IFIPVSKDNGSGGSTTTLEEKEFGVSVRFTPTVLG 417 Query: 325 PGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 GRI LR++ EVSE + G+NA +PS+ RKA+TTV+L G + + GL+K+ Sbjct: 418 SGRINLRVRPEVSELNVAGVQISSGGLNA-VLPSFTSRKAETTVQLMDGQSFAIGGLIKN 476 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 + P L ++P++GALFR++ F + +E+ TP LVKP+ + P D Y Sbjct: 477 NTTTNINAFPFLGELPVVGALFRSTEFQTDRSELVFVITPRLVKPLPV-GYRLPTDGY 533 >gi|307300715|ref|ZP_07580490.1| type II and III secretion system protein [Sinorhizobium meliloti BL225C] gi|306904249|gb|EFN34834.1| type II and III secretion system protein [Sinorhizobium meliloti BL225C] Length = 466 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 128/455 (28%), Positives = 225/455 (49%), Gaps = 24/455 (5%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG--KKISIGLNKVIILQ 61 + R+ ++ + F F VA I + A N VEI + I + K + ++ Sbjct: 1 MTRSRGSLFAFFCFV----VALCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIR 56 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 ++++ DP A V + R+ Y+ G +G +V + + + +DI + D Sbjct: 57 AVQRFDEIVIGDPEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTK 116 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L T+R+ + S+++V + +VL G + +A +++ F + Sbjct: 117 LLSSTIRQSVPGSSVKVTSANGRIVLSGSATDAVAATQAEQIASRF-----------AGD 165 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++V+N + I QV L V E+ RD+ K++G Q S + S S F + + Sbjct: 166 EEVINSIKITSSQQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSPRATSNTP 225 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + +S + + ALE R LAEP L A SG+++SF +GG+ +S Sbjct: 226 AGSLIGSLIGEGYSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIP-ISEQ 284 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDM--PSYRVRKAD 357 G +V+ +GV L FTPTVLS G I L I+ EVS + G++ P + VR+A Sbjct: 285 DGTITVSYKKFGVGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRAR 344 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T+V+L SG + ++AGLL+ + + + +P L ++PILGALF + + R ET++ I TP Sbjct: 345 TSVDLKSGQSFMIAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPH 404 Query: 418 LVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 LVKP+ ++ ++ P D +A+ FF ++++ Sbjct: 405 LVKPIDPLKKVASPSDRTKRPTEAE-FFLGNIDEV 438 >gi|12620550|gb|AAG60826.1|AF322012_131 RhcC2 [Bradyrhizobium japonicum] Length = 484 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 129/429 (30%), Positives = 206/429 (48%), Gaps = 29/429 (6%) Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 K + L P + V+DP AD S T+++FGK G+ ++ + +G+ + L I+ Sbjct: 75 KTVHLSAPAAT--IFVADPAIADYQAPSSSTIFVFGKKSGRTSLFALNENGEALAELRIV 132 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + + + L L+ + D I+V +L G+ + A +++E F+ Sbjct: 133 VTQPLEDLRAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVEAARKVTEQFVG------ 186 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 + V+N + +AG QV L V +AEV R +K + +I ++SGP+ +F A Sbjct: 187 ----AGAPVVNKIQVAGSLQVNLSVRVAEVSRTAVKDL----NINFTASGPNGAFLAT-- 236 Query: 236 GKFVSEGGDFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 GK G + FS VL AL LAEP LTA+SG++ASF +G Sbjct: 237 GKPGGSGRAGGGGTIGIGFSTGNINLSAVLDALASEHLASILAEPNLTAMSGEAASFLAG 296 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346 G+ + + SV +GV L F PTVLS +I +R++ EVSE + +N Sbjct: 297 GEFPIPVMQDNR-QVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSELSTEGEVKINGM 355 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P+ R+A T VEL SG + + GL++ + P L +PILGALFR+S F + Sbjct: 356 AVPALSTRRASTVVELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPILGALFRSSSFQKR 415 Query: 407 ETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 ETE+ I TP++V+P + +S P + + DA N V + ++A Sbjct: 416 ETELVIVVTPYIVRPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQGRDAPRASAPGL 475 Query: 466 KGAIGFIYK 474 G GFI + Sbjct: 476 TGNAGFIIE 484 >gi|17545374|ref|NP_518776.1| outer membrane channel protein [Ralstonia solanacearum GMI1000] gi|17427666|emb|CAD14185.1| probable pilus assembly protein, secretin cpac [Ralstonia solanacearum GMI1000] Length = 634 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 126/439 (28%), Positives = 228/439 (51%), Gaps = 50/439 (11%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++++ + K ++Q+ V+ V +P ++ SP+T+YL G++VG N+I+ G G Sbjct: 97 EVTVPVGKSTMVQLTEPVRSRTVGNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSC 156 Query: 109 MLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +D+ + D L+ TL + + S +RV +D++VL G V +Q+ ++++ F Sbjct: 157 SV-IDVSVGADPGGLQATLHALMPEASRVRVSAAADSLVLGGTVSDSVQAQKIIDIANAF 215 Query: 168 L-------SQSGR--------------NQYANSSS--------KKVMNLLNIAGEDQVTL 198 + +QSG+ A +SS +++N++++ QV L Sbjct: 216 VMRETRGPAQSGQTGTMGMQGMTAMSTGNAATASSGSGEAVRNPRIINMMSVEAPQQVML 275 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 +V +AEV + ++ Q+G ++ GS S +F A F+S D ++ F+ Sbjct: 276 EVKVAEVSKTLINQMGAALNLNGSFG--SWTFGAL--ANFLSGAPDIFSADKANKLPFQL 331 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHD--YGV 314 + A + ++ LAEP L AISGQ ASF +GG+ +Y V S TG T++ + +GV Sbjct: 332 RVDAQKGDGLVKVLAEPNLMAISGQEASFLAGGK-VYIPVPQSFGTGTTTILLQEETFGV 390 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE--PV-IGVNAGD------MPSYRVRKADTTVELPSG 365 L FTPTVL GRI L++ EVSE P + V A + +P R+A TT+++ G Sbjct: 391 GLRFTPTVLENGRINLKVAPEVSELSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHDG 450 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + + GL+K ++ + IP + ++P++GAL R++ F +++TE+ TP LVKP+ Sbjct: 451 QSFAIGGLIKSNVTGSLKAIPGVGELPVIGALARSTSFQQDQTELLFVVTPHLVKPLPA- 509 Query: 426 DLSRPDDHYSVEDDAKAFF 444 + P D + + + + Sbjct: 510 NYPMPTDSFGPVNQGEVYL 528 >gi|300704930|ref|YP_003746533.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957] gi|299072594|emb|CBJ43944.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957] Length = 622 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 120/433 (27%), Positives = 220/433 (50%), Gaps = 44/433 (10%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++++ + K ++Q+P V++ V +P ++ SP+T+YL G+ VG N+I+ G G Sbjct: 99 EVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVSPQTLYLLGQEVGTTNMIVQGRSGSC 158 Query: 109 MLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +D+ + D L+ TLR + + N++V +D++VL G V +Q+ ++++ F Sbjct: 159 SV-IDVSVGADPGGLQSTLRTLVPGAKNVQVSAAADSLVLSGSVSDSVQAQKVLDIANAF 217 Query: 168 LSQSGRNQY----------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 + + R A S +++N++ + QV L+V +AEV Sbjct: 218 VMRQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPRSPRIINMMAVEAPQQVMLEVKVAEV 277 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + ++ Q+G ++ G+ S +F A F+S D + + L A + Sbjct: 278 SKTLIDQMGSALNVNGAFG--SWTFGAL--ANFLSGSNDIVNFSKNNHLPLKFALDAQKG 333 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTP 320 ++ LAEP+L AISGQ ASF +GG+ ++ V+ V T +GV L FTP Sbjct: 334 DGLVKVLAEPSLMAISGQEASFLAGGK-VFIPVAQGAATNGVATIILQEETFGVGLRFTP 392 Query: 321 TVLSPGRIGLRIQTEVSE------PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLA 371 TV+ GRI L++ EVSE V N+ + +P R+A TT+++ G + + Sbjct: 393 TVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSILPLITTRRASTTLQVHDGQSFAIG 452 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K+++ + IP + ++P++GAL R++ F +++TE+ TP LVKP+ + P Sbjct: 453 GLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQTELVFVVTPRLVKPLPAQ-YPLPT 511 Query: 432 DHYSVEDDAKAFF 444 D + + A+ F Sbjct: 512 DSFGQANPAEIFL 524 >gi|27376953|ref|NP_768482.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110] gi|27350095|dbj|BAC47107.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110] Length = 430 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 129/429 (30%), Positives = 206/429 (48%), Gaps = 29/429 (6%) Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 K + L P + V+DP AD S T+++FGK G+ ++ + +G+ + L I+ Sbjct: 21 KTVHLSAPA--ATIFVADPAIADYQAPSSSTIFVFGKKSGRTSLFALNENGEALAELRIV 78 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + + + L L+ + D I+V +L G+ + A +++E F+ Sbjct: 79 VTQPLEDLRAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVEAARKVTEQFVG------ 132 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 + V+N + +AG QV L V +AEV R +K + +I ++SGP+ +F A Sbjct: 133 ----AGAPVVNKIQVAGSLQVNLSVRVAEVSRTAVKDL----NINFTASGPNGAFLAT-- 182 Query: 236 GKFVSEGGDFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 GK G + FS VL AL LAEP LTA+SG++ASF +G Sbjct: 183 GKPGGSGRAGGGGTIGIGFSTGNINLSAVLDALASEHLASILAEPNLTAMSGEAASFLAG 242 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346 G+ + + SV +GV L F PTVLS +I +R++ EVSE + +N Sbjct: 243 GEFPIPVMQDNR-QVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSELSTEGEVKINGM 301 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P+ R+A T VEL SG + + GL++ + P L +PILGALFR+S F + Sbjct: 302 AVPALSTRRASTVVELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPILGALFRSSSFQKR 361 Query: 407 ETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 ETE+ I TP++V+P + +S P + + DA N V + ++A Sbjct: 362 ETELVIVVTPYIVRPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQGRDAPRASAPGL 421 Query: 466 KGAIGFIYK 474 G GFI + Sbjct: 422 TGNAGFIIE 430 >gi|123443821|ref|YP_001007792.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090782|emb|CAL13664.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 453 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 121/398 (30%), Positives = 203/398 (51%), Gaps = 33/398 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +S G + +I Q +D V VS AD + ++ ++ K G A IL + + Sbjct: 37 LSTGESYMIKTQEEIDT--VFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPI 94 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ-------RAVE 162 IL++ I +R +S+I + + D+ +L G V T + + A+ Sbjct: 95 KKSAILVDNTITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIG 154 Query: 163 LSETFLSQS-----GRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 +T S S G +QY NS +V+N + + G +QV +K+TIAEV +D + IG Sbjct: 155 SEKTIASNSKKDSDGNSQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMD 214 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 S G+ SG + F + KF ++G ++HA+ + R LAEP Sbjct: 215 WSTIGNFSGSFQFFKPNGLNKFNAKG-------------ISALVHAINDDSIARVLAEPN 261 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L+ +SG+SASF GG+ V+++ +T +T +G+ L+ V + RI +++ EV Sbjct: 262 LSVLSGESASFLVGGE--LPLVNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEV 319 Query: 337 S--EPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 S + V ++ GD PS+R RKA TT+EL G + +L GL+ ++ + IP + IPI Sbjct: 320 SSVDKVFNIDGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPI 379 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 LGA FRN+ + +TE+ + AT LV+PV+ +++ P+ Sbjct: 380 LGAFFRNAETRKNQTELVVVATVNLVRPVSEKEVELPN 417 >gi|13471032|ref|NP_102601.1| secretory protein [Mesorhizobium loti MAFF303099] gi|14021776|dbj|BAB48387.1| probable secretory protein [Mesorhizobium loti MAFF303099] Length = 461 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 130/415 (31%), Positives = 207/415 (49%), Gaps = 47/415 (11%) Query: 26 LPPIKEANAAVINIS-----DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80 LP + +A+ ++ +S +++ KGK +I N +++ DP A+V Sbjct: 13 LPGVAKADNDIVYVSATKNASIKVAKGKPKTIVTNAAFY--------QIVIGDPEIANVN 64 Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140 + ++ Y+ G N+G + L + + +DI + D L T+R + D+ I+V Sbjct: 65 PLTDKSFYVLGNNLGTTGIALFDEKKQLVGTVDIEVTLDTDQLASTIRASVPDAKIKVGS 124 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + VVL G +++A +++ F S +++V+N +NI+ QV L V Sbjct: 125 ANGRVVLSGEADDAVAAEKANKIATRF-----------SGTEEVINSVNISSSQQVQLNV 173 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-EGGDFSVKG---VLDRF-- 254 E+ R + +G ++S +FA FGG+ VS + G G ++ R Sbjct: 174 RFVEINRQAGQDLGAKYS---------ANFAYGFGGRDVSLDPGTVPAAGTGEIIGRLLS 224 Query: 255 ---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 S + + ALE R LAEP L A SG++ASF +GG+ VS G SV+ Sbjct: 225 NGVSIDIAIKALEERGLARRLAEPNLIARSGETASFLAGGEFPIP-VSEDNGKISVSYKK 283 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELPSGGT 367 YGV L FTPTVL G + L I EVS + N G +P + VR+A T+V+L +G + Sbjct: 284 YGVSLDFTPTVLKDGLVSLDIAPEVSSIDASSSYNIGTISVPGFIVRRAKTSVDLKNGQS 343 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 ++AGLL+ IP L K+P+LGALF + + R ET++ I TP+LVKPV Sbjct: 344 FMIAGLLQSQNDITTSRIPGLGKMPVLGALFSSKSYQRRETDLVIIVTPYLVKPV 398 >gi|218710406|ref|YP_002418027.1| Flp pilus assembly protein [Vibrio splendidus LGP32] gi|218323425|emb|CAV19602.1| Flp pilus assembly protein [Vibrio splendidus LGP32] Length = 484 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 128/446 (28%), Positives = 216/446 (48%), Gaps = 27/446 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 GK +++ +K + + V + DP D+V+ ++L GK +G N++ G Sbjct: 25 GKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVMLKSSELFLIGKKLGATNLMAWDSRG 84 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + +++I + D+ L+ L F+ D I V + ++L G V Q A+ ++ET Sbjct: 85 QLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQMNVAMRIAET 144 Query: 167 FLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216 + S ++ S S++ V+NL++I G QV L+VT+AEV+R ++++ FQ Sbjct: 145 YSSGETADESKESGSEQAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQ 204 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRT 271 S + S G S A G + + + G+L F F L ++ + Sbjct: 205 TSGSNISWGASSVPAGVLGATPIFDIPTSTDYGILGSFIDSNTLFTFALDVAKQNGVAKV 264 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP LTA+SG A F +GG+ V G T + +YGV L F PTVLS +I L Sbjct: 265 LAEPNLTALSGSKAEFLAGGEFPIP-VPDEDGIT-IEYKEYGVGLKFIPTVLSDKKINLN 322 Query: 332 IQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + +VSE + ++ G +P R A +T+EL G TI +AGLL ++++ + Sbjct: 323 LAVDVSEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDV 382 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P + +PILG LF + + ETE+ I TP L P+ ++ P D + +D + Sbjct: 383 SNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLASPIDRSKVTLPTDAFVDPNDLE 442 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKG 467 + R I P E+ + Q +G Sbjct: 443 YYLLGRSAYIAEPSESDSEQSQASQG 468 >gi|326797327|ref|YP_004315147.1| type II and III secretion system protein [Marinomonas mediterranea MMB-1] gi|326548091|gb|ADZ93311.1| type II and III secretion system protein [Marinomonas mediterranea MMB-1] Length = 464 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 124/415 (29%), Positives = 209/415 (50%), Gaps = 26/415 (6%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ ++ + +N+ +L +P VL+++P A + SP +++F K G + + Sbjct: 44 EVAVSGQVKLHVNQGTLLNLPKAASKVLIANPEVASFQMPSPDNVFVFAKAPGDTTLYAL 103 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQRAV 161 + ++ + + D+ L + + + + ++V +D +++ G V+T Q +++ + Sbjct: 104 DENNDVIIAVTLTSGYDLEGLTRQVAKEVPGTEVQVGPATDKGLIVRGTVQTPQQAKQVI 163 Query: 162 ELSETFLSQS-------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 E++L S GR +N S +++N L +A QV + V I EV R + +G Sbjct: 164 SSVESYLGASTSANGRGGRGGQSNQS-LRIVNQLKVALSSQVNISVRIVEVSRSLTHALG 222 Query: 215 FQHSI-----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET--VLHALERAT 267 F TG S F A G V +G S+ GVL + VL AL Sbjct: 223 FSWDTLFDNNTGFIRNGSSLFDASTG---VFDGSGISL-GVLGGTIGDVGGVLSALSNDG 278 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 LAEP LTA+SG++A F GG+ V + + ++ YGV++ TPT+LSP R Sbjct: 279 MASILAEPNLTAMSGETAGFAVGGE--VPIVIQTNNSVTIEYKQYGVIMRMTPTLLSPNR 336 Query: 328 IGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 I L I EVS+ + +N +P+++VR+A+TTVEL SG + LAG+L+ + Q Sbjct: 337 ISLHIAPEVSDLSDDGSVVLNDTTIPAFKVRRANTTVELASGQSFALAGMLRSSVSQTVS 396 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 G+P L IP+LG +F +EETE+ I AT ++V+P + +L P S D Sbjct: 397 GVPGLRSIPVLGRMFETEINQKEETELVIIATAYIVEPTSANNLQSPAQGISTID 451 >gi|86147467|ref|ZP_01065779.1| Flp pilus assembly protein [Vibrio sp. MED222] gi|85834760|gb|EAQ52906.1| Flp pilus assembly protein [Vibrio sp. MED222] Length = 485 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 126/438 (28%), Positives = 213/438 (48%), Gaps = 27/438 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 GK +++ +K + + V + DP D+V+ ++L GK +G N++ G Sbjct: 25 GKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVILKSNEVFLIGKKLGATNLMAWDSRG 84 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + +++I + D+ L+ L F+ D I V + ++L G + Q A+ ++ET Sbjct: 85 QLIESINIEVTHDLNSLKSKLYEFLPDETIEVHSAQNRLLLSGQISNQQKMNVAMRIAET 144 Query: 167 FLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216 + + + S S++V +NL++I G QV L+VT+AEV+R ++++ FQ Sbjct: 145 YAAGQAADDSKESGSEQVAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQ 204 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRT 271 S + S G S A G V + + G+L F F L ++ + Sbjct: 205 TSGSNFSWGASSVPAGALGATPVFDIPTSTDYGILGSFIDSNTLFTFALDVAKQNGVAKV 264 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP LTA+SG A F +GG+ V G T + +YGV L F PTVLS +I L Sbjct: 265 LAEPNLTALSGSKAEFLAGGEFPIP-VPDEDGIT-IEYKEYGVGLKFIPTVLSDKKINLN 322 Query: 332 IQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + +VSE + ++ G +P R A +T+EL G TI +AGLL ++++ + Sbjct: 323 LAVDVSEIANSSSLTIDPGSTNATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDV 382 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P + +PILG LF + + ETE+ I TP L KPV ++ P D + +D + Sbjct: 383 SNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLAKPVDRSKVTLPTDAFVDPNDLE 442 Query: 442 AFFFNRVNKIYGPKEASE 459 + R I P ++ + Sbjct: 443 YYLLGRSAYIAEPSDSED 460 >gi|308050059|ref|YP_003913625.1| type II and III secretion system protein [Ferrimonas balearica DSM 9799] gi|307632249|gb|ADN76551.1| type II and III secretion system protein [Ferrimonas balearica DSM 9799] Length = 487 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 124/409 (30%), Positives = 201/409 (49%), Gaps = 53/409 (12%) Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL-DILIERDIAHLEMTL 127 V V +P AD+++ +P+ +Y+ G+ +G N I++ D +++++ DI I D+ L+ L Sbjct: 67 VSVGNPAIADILLINPKELYILGRQLGSTN-IMVWDDQDRLVDIVDIEITHDLNGLKEKL 125 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 RF+ D I V +V+ G V + A++L+ + + N N+S+ V+NL Sbjct: 126 HRFLPDEPIEVHSSQGQLVIGGQVSNLDRMNMALDLAHGYAVAA--NNSDNTST--VLNL 181 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-- 245 +++ G QV L+VT+ EV+R++ +++ +DF V EG DF Sbjct: 182 MSVGGGHQVMLEVTVTEVQREL-----------------ARTLDSDFA--LVFEGSDFIG 222 Query: 246 ---------SVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 S KG+ + F+ + ++ R LAEP LT +SGQ A F SGG Sbjct: 223 GLLGGDGLISNKGIFGSYVSGDVLFDFAIDMAKQQGLARVLAEPNLTTMSGQMAEFLSGG 282 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----------PVI 341 + + T++ ++GV + F PTVL GRI L + VSE P Sbjct: 283 E--FPIPVPDRDGTTIEYKEFGVGVKFVPTVLDSGRINLNLNVLVSELSNANAVGVIPEG 340 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 A PS R A++T+EL G TI +AGLL +++ + +P L +IP+LG LF + Sbjct: 341 STTALVTPSITKRSANSTIELGDGQTIAIAGLLSSTVRESMDELPGLGEIPVLGQLFSSQ 400 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 + ETE+ I TP LV+PV L P D + D + R++K Sbjct: 401 EYRNGETELVILVTPRLVRPVDREKLVLPTDGFVDPTDLGFYLMGRLSK 449 >gi|84387245|ref|ZP_00990266.1| Flp pilus assembly protein [Vibrio splendidus 12B01] gi|84377892|gb|EAP94754.1| Flp pilus assembly protein [Vibrio splendidus 12B01] Length = 484 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 128/442 (28%), Positives = 213/442 (48%), Gaps = 27/442 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 GK +++ +K + + V + DP D+V+ ++L GK +G N++ G Sbjct: 25 GKTVTVPHHKSTHVVLSGKAAKVSLGDPEVLDIVILKSNELFLIGKKLGATNLMAWDSRG 84 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + +++I + D+ L+ L F+ D I V + ++L G V Q A+ ++ET Sbjct: 85 QLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQMNVAMRIAET 144 Query: 167 FLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216 + S ++ S S++ V+NL++I G QV L+VT+AEV+R ++++ FQ Sbjct: 145 YSSGQTADKSNESGSEQADATGVINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQ 204 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRT 271 S + S G S A G + + G+L F F L ++ + Sbjct: 205 TSGSDFSWGASSVPAGVLGATPIFNIPTSTDYGILGSFIDSNTLFTFALDVAKQNGVAKV 264 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP LTA+SG A F +GG+ V G T + +YGV L F PTVLS +I L Sbjct: 265 LAEPNLTALSGSKAEFLAGGEFPIP-VPDEDGIT-IEYKEYGVGLKFIPTVLSDKKINLN 322 Query: 332 IQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + +VSE + ++ G +P R A +T+EL G TI +AGLL ++++ + Sbjct: 323 LAVDVSEIANTSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDI 382 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P +PILG LF + + ETE+ I TP L KP+ ++ P D + +D + Sbjct: 383 SNKMPGFGDVPILGQLFNSQEYISGETELVILVTPRLAKPIDRSKVTLPTDAFVDPNDLE 442 Query: 442 AFFFNRVNKIYGPKEASEVEGQ 463 + R I P E+ + Q Sbjct: 443 YYLLGRGAYIAEPSESDSEQSQ 464 >gi|157961834|ref|YP_001501868.1| type II and III secretion system protein [Shewanella pealeana ATCC 700345] gi|157846834|gb|ABV87333.1| type II and III secretion system protein [Shewanella pealeana ATCC 700345] Length = 478 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 123/424 (29%), Positives = 210/424 (49%), Gaps = 21/424 (4%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I I ++V++L+ PV V V +P+ AD+ + +Y+ GK +G NV++ + + Sbjct: 37 IPIFKSRVLMLKGPV--HRVSVGNPSIADIKLLPNDELYILGKQLGSTNVMIWDKNEQLA 94 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 +DI + D+ L+ L +F+ + V+ ++L G +Q AVEL++ + Sbjct: 95 RIMDIEVTHDLNGLKTRLYQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAE 154 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 + Q + KV+N++ I G+ QV L+V +AEV+R++ +Q + I S S Sbjct: 155 AAAGGQ----APSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGSNLSGG 210 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQS 284 GG G KG+ ++ L ++ + LAEP +TA+SGQS Sbjct: 211 LVGGGGGFDPGSIGGIDAKGLFAQYINGDLMMNFALDIAKQNGLAKVLAEPNVTAMSGQS 270 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------ 338 A F SGG+ V G T++ DYGV + F PTVL G+I L + VSE Sbjct: 271 AEFLSGGEFPIP-VPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANG 329 Query: 339 -PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G + + PS R TTVEL G TI ++GL+ D +++ + +P L +P+LG Sbjct: 330 FAISGNTSTTLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLG 389 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 LF + F ++E+ I TP LV+ +D+S P D + + D + + +++ Sbjct: 390 QLFTSKSFQSGQSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENSD 449 Query: 456 EASE 459 ++S+ Sbjct: 450 DSSD 453 >gi|295690798|ref|YP_003594491.1| type II and III secretion system protein [Caulobacter segnis ATCC 21756] gi|295432701|gb|ADG11873.1| type II and III secretion system protein [Caulobacter segnis ATCC 21756] Length = 564 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 147/518 (28%), Positives = 231/518 (44%), Gaps = 110/518 (21%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 +E+ KGK I+++P DV+D+LV+ PT AD V+ R +Y+ G G + Sbjct: 72 LELAKGKSA--------IVELPADVRDLLVTSPTVADAVLRDRRRVYIVGLAEGVTDAAF 123 Query: 102 IGHDGKQMLNLDILIE------------------------RDIAHLEMTLR--------- 128 G+++L+L I + RD L T+R Sbjct: 124 FDDAGRRILSLSIKVSQPVDQLADTLSRVLPDAKIEVRPIRDSVVLSGTVRSPAQSDAAA 183 Query: 129 ----RFIADSNIRVEMVS----DTVVLHGMVRTIQDS---QRAVELSETFLSQSGRNQYA 177 +++ + + M+S D V+L + ++ + Q V+L+ L Q G++QY+ Sbjct: 184 RIAAQYVGGPDKVLNMLSIAGKDQVMLQVRIVEVRRNVIKQLGVDLN-AVLGQLGQSQYS 242 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----- 232 S N+ G + D KQ Q G+ G +K A Sbjct: 243 FGLSPTYSVNGNLLGG-------VTGGYKLDTTKQPTLQIP-CGNGVGDAKCLAVVHGKV 294 Query: 233 --------DFGGKFVSEGGDFSV----KGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G + V GD + G + ++ A ER +RTLAEP LTA+ Sbjct: 295 YHTGVIDPTTGREIVVGNGDTATISDTAGSTGVNQAKGMIQAFERVGLVRTLAEPNLTAV 354 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-- 338 SG++ F GG+ T S +TG ++ YGV L +TP V+S GRI L+I TEVSE Sbjct: 355 SGEAGHFLVGGEFPVPTGSDATGKIAIEFKPYGVGLGYTPVVMSGGRISLKISTEVSELS 414 Query: 339 ---------------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P+ +P VR+A+TTVELPSGG+ ++AGLL+ Sbjct: 415 SLGAFTISNSTTSGNTTTTSAPLT------VPGLSVRRAETTVELPSGGSFMIAGLLQQT 468 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +Q + +P ++ +PILG+LFR+ F ETE+ I TP++V P RDL P D + Sbjct: 469 TKQAIDALPGMTNMPILGSLFRSRDFLNGETELVIIVTPYIVDPAKPRDLQTPADGLRMA 528 Query: 438 DDAKAFFFNRVNKIY-GPKEASEVEGQNYKGAIGFIYK 474 D R+N++ P A+ G+ Y+G +G++ + Sbjct: 529 GDMSTVLLGRLNQVVKAPPGAN--AGRAYQGPVGYVIE 564 >gi|13475294|ref|NP_106858.1| type II secretion system protein [Mesorhizobium loti MAFF303099] gi|14026045|dbj|BAB52644.1| type II secretion system protein [Mesorhizobium loti MAFF303099] Length = 432 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 125/406 (30%), Positives = 196/406 (48%), Gaps = 29/406 (7%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 +S L K + L P + V+DPT AD S T+++FGK G+ ++ + G+ Sbjct: 19 NLSSSLGKTVHLPAPATT--IFVADPTIADYQAASNTTIFVFGKKSGRTSLFALDDKGEA 76 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + L I++ + I L L + DS+I+V +L G + + A ++E +L Sbjct: 77 LAALRIVVTQPIEELRAMLMDQVGDSSIQVSYTPRGAILSGTAPNAEVADTAKRVTEQYL 136 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------ 222 +V+N + +AG QV L V +AEV R +K +G S G Sbjct: 137 GDGA----------QVVNNIKVAGSLQVNLSVRVAEVSRSAMKALGVNLSAFGQIDNFRV 186 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + + G F+ V + VL AL + LAEP LTA+SG Sbjct: 187 GLLSGGGTGSGAAQGGGTAGIGFNNGAV----NIGAVLDALAKEHIASVLAEPNLTAMSG 242 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 ++ASF +GG+ + + SV +GV L F PTVL+ RI + ++ EVSE Sbjct: 243 ETASFLAGGEFPIPVLQENK-QVSVEFRHFGVSLEFVPTVLNNNRINIHVKPEVSELSSQ 301 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + +N +P+ R+ADT VEL SG + + GL++ ++ P L ++PILGALF Sbjct: 302 GAVQINGISVPAVSTRRADTVVELASGQSFAIGGLIRRNVNNNVSAFPWLGEMPILGALF 361 Query: 399 RNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVE-DDAKA 442 R+S F +EE+E+ I TP++VKP + +S P D + DD A Sbjct: 362 RSSSFQKEESELIILVTPYIVKPGSSPNQMSAPTDRMAPALDDPPA 407 >gi|163751744|ref|ZP_02158962.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica KT99] gi|161328396|gb|EDP99555.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica KT99] Length = 484 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 123/435 (28%), Positives = 216/435 (49%), Gaps = 37/435 (8%) Query: 59 ILQVPV----------DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 I+Q+P+ V V V +P D+ + +Y+ GK +G N+++ + + Sbjct: 39 IMQIPIFKSRIINLKHAVHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIMIWDENERL 98 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +DI I D+ L++ L F+ + V+ +++ G ++ AVEL++ + Sbjct: 99 VDVIDIEITHDLNGLKLRLHEFLPGEKLGVQTSQGHLLISGQASNLKKMNTAVELAKAYA 158 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------TG 221 + + ++ ++ V+N++ + G+ QV L+V IAEV+R++ +Q + I +G Sbjct: 159 AAASVSKVKST----VLNMMTVGGDHQVMLEVVIAEVQREVARQFDSKFFIFNKGSKMSG 214 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 +G SF D S G F + + D L ++ + LAEPT+TA+S Sbjct: 215 GVAGRGGSFDLDPAAAIDSRG--FFARYLNDNLMMNFALDVAKQNGLAKILAEPTVTALS 272 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--- 338 GQSA F SGG+ V G+T++ D+GV + F PTVL G+I L + VSE Sbjct: 273 GQSAEFLSGGEFPIP-VPGINGSTTIQYRDFGVGVRFVPTVLDSGQINLNLNVIVSEISN 331 Query: 339 -PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + ++ G +PS R TTVEL G TI ++GL+ D +++ + +P L I Sbjct: 332 VHSVSLSGGGSNATLIVPSIVKRTTSTTVELADGQTIAISGLISDTLRENIDKLPGLGDI 391 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 PILG LF + F ++E+ I TP LV+P + +S P D + + D + + +++ Sbjct: 392 PILGQLFTSKSFKSGQSELVILVTPRLVRPFNRKHISLPTDDFVLPSDMEFYLLGKMSH- 450 Query: 452 YGPKEASEVEGQNYK 466 K+ S+ G Y+ Sbjct: 451 --KKQNSQRSGTPYE 463 >gi|148976307|ref|ZP_01813031.1| type II and III secretion system protein [Vibrionales bacterium SWAT-3] gi|145964401|gb|EDK29656.1| type II and III secretion system protein [Vibrionales bacterium SWAT-3] Length = 464 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 122/412 (29%), Positives = 208/412 (50%), Gaps = 47/412 (11%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + +N+ ++++P + + +S AD + + +FGK G A + ++ + + Sbjct: 27 LDVTINEAKMIRLPEKAKSIFISSTHIADYQTLTNTKVMVFGKRAGSATITVLNEQERVI 86 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 I + + ++ ++++ E + + L G V + + V L++ +LS Sbjct: 87 YTNKIRVTHNSREFNELVKNKFPEASVNAESLGGKLWLKGRVPSPMMAHNIVSLAKGYLS 146 Query: 170 --------QSGRNQYANSSS--------------KKVMNLLNIAGEDQVTLKVTIAEVRR 207 + G N N+SS ++++N L + +QV ++V IAEV R Sbjct: 147 PIVNQTEQKEGSNTNKNNSSDSALTQSQPTSSKEEELINQLVVTMPNQVNIRVKIAEVSR 206 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKF--VSEGGDFSVKGVLDRFSFETVLHALER 265 ++ ++G + GS +G F + KF VS G S+ ++D AL Sbjct: 207 NVSNKLGIKW---GSLAGGVGQF---YFAKFPNVSSWGKPSITTLVD---------ALAS 251 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + LAEP LTA+SG+ A F GGQ +++ T T + D+GV L+FTPTVLS Sbjct: 252 NGMMSVLAEPNLTAMSGEDAEFLVGGQVPLPLITADT--TQIEYKDFGVKLNFTPTVLSQ 309 Query: 326 GRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQ 380 RI L++ EVS I + + PS+ R A TT+EL SG + L GLLK +DI+Q Sbjct: 310 NRISLKVNPEVSNVSIDGQQVIQGANFPSFTTRSASTTIELASGQSFALGGLLKSEDIEQ 369 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L++ +PL+++IP+LG+LFR++ F R ETE+ I T +LV+P + P D Sbjct: 370 LQK-VPLVAEIPVLGSLFRSTEFTRRETELIIIVTAYLVQPTRSDSMQLPTD 420 >gi|319783874|ref|YP_004143350.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169762|gb|ADV13300.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 482 Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 131/412 (31%), Positives = 202/412 (49%), Gaps = 37/412 (8%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 K++ G K II +++ DP A+V + ++ Y+ G N+G + L + Sbjct: 56 KVAKGKPKTIITSAAF--YQIVIGDPEIANVNPLTDKSFYVLGNNLGTTGIALFDEKKQL 113 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +DI + D L T+R + D+ I+V + VVL G +++A +++ F Sbjct: 114 VGTVDIEVTLDTDQLASTIRASVPDARIKVGSANGRVVLSGEADDAVAAEKANKIATRF- 172 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 S +++V+N +NI+ QV L V E+ R + +G +++ Sbjct: 173 ----------SGAEEVINSVNISSSQQVQLNVRFVEINRQAGQDLGAKYA---------A 213 Query: 229 SFAADFGGKFVS-EGGDFSVKG---VLDRF-----SFETVLHALERATAIRTLAEPTLTA 279 +FA GG+ VS + G G ++ R S + + ALE R LAEP L A Sbjct: 214 NFAYGLGGRDVSIDPGTVPTAGTGEIIGRLLSNGVSIDIAIKALEERGLARRLAEPNLIA 273 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-- 337 SGQ+ASF +GG+ VS G SV+ YGV L FTPTVL G + L I EVS Sbjct: 274 RSGQTASFLAGGEFPIP-VSEDNGKISVSYKKYGVSLDFTPTVLKDGLVSLDIAPEVSSI 332 Query: 338 EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + N G +P + VR+A T+V+L +G + ++AGLL+ IP L K+P+LG Sbjct: 333 DASASYNIGTISVPGFIVRRARTSVDLKNGQSFMIAGLLQSQNDITTSRIPGLGKMPVLG 392 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFN 446 ALF + + R ET++ I TP+LVKPV + L P D +A F N Sbjct: 393 ALFSSKSYQRRETDLVIIVTPYLVKPVDPSKKLVEPTDGTQPASNADYFLNN 444 >gi|90406750|ref|ZP_01214943.1| RhcC2 protein [Psychromonas sp. CNPT3] gi|90312203|gb|EAS40295.1| RhcC2 protein [Psychromonas sp. CNPT3] Length = 459 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 127/417 (30%), Positives = 204/417 (48%), Gaps = 48/417 (11%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 + K +++ L++ +L +P + + ++ AD + + +FGK VG ++ ++ Sbjct: 18 AQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTKIMIFGKRVGSTSLYVLDA 77 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 + + + + ++ L ++ ++ + E + + L G V T +++ V L+ Sbjct: 78 RENVIYSATVKVNHNVQELNALIKHEFPNAQVHSESTAGKLFLKGQVSTPSIAEKIVRLA 137 Query: 165 ETFLS---------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 E ++S Q G + + ++++++N L I QV L+V IA Sbjct: 138 EGYVSSNGGKSESAGAATEGGAQDDQQGGESAQSTQNTQELINQLVITMPTQVNLRVRIA 197 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF---ETVL 260 EV R++ ++G + A + G + G F K L F ++ Sbjct: 198 EVSRNVSNKLGIKWG------------AQNIG----TISGTFGTKNWLPNVKFPDLSIMI 241 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 AL I LAEP LTAISG+ ASF GG+ V + ++ +GV L F P Sbjct: 242 DALASNGLISILAEPNLTAISGERASFLVGGEIPLPVVFGDSA--NIIYKPFGVRLDFKP 299 Query: 321 TVLSPGRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TVLS RI L+I+ EVS P V G +P + RKA TT+EL SG + + GLL+ Sbjct: 300 TVLSANRIRLQIEPEVSTIAPRTNVQIGGSSLPVFITRKASTTIELASGQSFAIGGLLQS 359 Query: 377 -DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 DI+QL++ IPLL IPILGALFR+S F REETE+ I AT +LV+P S P D Sbjct: 360 KDIEQLQK-IPLLGDIPILGALFRSSEFQREETELIIIATVYLVQPTRSDKFSLPTD 415 >gi|51245387|ref|YP_065271.1| hypothetical protein DP1535 [Desulfotalea psychrophila LSv54] gi|50876424|emb|CAG36264.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 480 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 132/445 (29%), Positives = 216/445 (48%), Gaps = 43/445 (9%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV---VHSPRTMYLFGKNVGQANVILIG 103 G+ + + +N++ L+ ++ + +P A+++ SP +++ GK++G + L G Sbjct: 41 GEPVQLTINRLAKLRSSEVIRRAHIVNPDIAELIYSKTQSPAWVFVSGKSIGTTQLTLWG 100 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 K + +I++ D+ L+ + N+ V D + L G V Q+ + L Sbjct: 101 ARNKILGTFEIIVRPDVLGLKKHIHDVFPGENVSVRDSGDFLTLTGTVAGAVRLQKILAL 160 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +E + + KV+NLL + G QV L+V IAE+ + + Q+G + GSS Sbjct: 161 AEAY------------APSKVINLLKVGGIQQVMLEVRIAEISKRVGNQLGINFGLDGSS 208 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG--VLDRF--------------SFETVLHALERAT 267 G S G GG ++ VLD S+ + AL+ Sbjct: 209 -GFGLSMLDGLSGL---PGGTLPIEPARVLDGLNIGSGVNAVFGKSGSYIVAIDALQEDG 264 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ LA+PTL A SGQSASF +GG+ + V+ S+ +GV L+FTPTVL GR Sbjct: 265 LVKVLAKPTLIAQSGQSASFLAGGEFPFP-VAQQFDRFSIEWKPFGVGLNFTPTVLGEGR 323 Query: 328 IGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 I L + EVS+ I +PS R+ T VEL + +AGL+K++I++ + Sbjct: 324 ISLLVSPEVSDLDFTNTISYAGYVVPSIETRRMSTVVELNDNQSFAIAGLMKNNIRESIK 383 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 PLL IPILG LFR+S++ + ETE+ + TP LV PV +LS P D + + AF Sbjct: 384 KFPLLGDIPILGVLFRSSKYIKNETELVVVVTPHLVTPVDGDELSLPTDSFV---EPTAF 440 Query: 444 FFNRVNKIYGPKEASEVEGQNYKGA 468 + + G ++ + VE + GA Sbjct: 441 ELLVLGMLEGKEKQTYVENASATGA 465 >gi|239814526|ref|YP_002943436.1| type II and III secretion system protein [Variovorax paradoxus S110] gi|239801103|gb|ACS18170.1| type II and III secretion system protein [Variovorax paradoxus S110] Length = 504 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 124/385 (32%), Positives = 204/385 (52%), Gaps = 39/385 (10%) Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-I 136 DV + SP ++ G+ G NV+L DG + D+++ D L+ L + + N I Sbjct: 122 DVTLLSPTDLFFRGRQAGSMNVVLQSVDGTCYIK-DVIVTIDPGALQSKLAELMPEENHI 180 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 RV ++VL G + + L+ + + KKV+NLL + QV Sbjct: 181 RVRSAEKSIVLTGEISDALKLDDVMSLAMAY----------GADGKKVVNLLRVTAPQQV 230 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD--RF 254 L+V IAEV + +L ++G + ++ + G S++ F+S GG G+L+ R Sbjct: 231 MLEVKIAEVSKTLLDRLGARVGLSRTGGGGRDSYS--LISSFLSGGG-----GLLEAIRI 283 Query: 255 SFETV-LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--TSVTTHD 311 +V + + +R LAEP + AISGQ ASF SGG+ S+ G T++T + Sbjct: 284 GRTSVGIDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQSAAGGGGTNITLEE 343 Query: 312 --YGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRKADTTV 360 +G+ + FTPTVL+ GR+ L++ +EVS+ V GV A +PS VR+ADTTV Sbjct: 344 KEFGIGVKFTPTVLNGGRVNLKMISEVSDLSQTGSPFTTVTGVTA-VLPSLTVRRADTTV 402 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +L G + V+AGL+K ++ + + P L ++P++GALFR++ F ++TE+ TP LV+ Sbjct: 403 QLNDGQSFVIAGLIKSNVTESIKRYPGLGEVPVMGALFRSTEFQNDQTELMFVITPRLVR 462 Query: 421 PVAMRDLSR-PDDHYSVEDDAKAFF 444 P+A + R P D++ V A+ + Sbjct: 463 PLA--EAPRVPTDNHVVPSRAEVYL 485 >gi|217978832|ref|YP_002362979.1| type II and III secretion system protein [Methylocella silvestris BL2] gi|217504208|gb|ACK51617.1| type II and III secretion system protein [Methylocella silvestris BL2] Length = 530 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 136/414 (32%), Positives = 203/414 (49%), Gaps = 39/414 (9%) Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 ADV+ S R +Y+ GK VG NV + D K + +D+ + DI ++ +R I Sbjct: 95 ADVLPMSDRVIYIQGKRVGTTNVSIFDKDKKLIGVIDLEVTLDIQNIAAKVRSGTDSRGI 154 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 RV +D +VL G R D+ RAV ++++ ++ + + + K V+N +++A QV Sbjct: 155 RVSSNNDQIVLSGEARNAVDADRAVSIAKSMVT-TADGKPPDDPGKFVINAMSVAAAQQV 213 Query: 197 TLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPS-------KSF 230 L+V EV R + IG S G S P+ ++ Sbjct: 214 LLRVRFVEVNRIAERDIGVNWFGAANKTQTAGVNTGNGIASQVGQSLTPTPGGIPLFQTL 273 Query: 231 AADFGGKFVSEGG-DFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 A G S G F V + L + + ++ ALE+ R LAEP L A+SG +ASF Sbjct: 274 ATLVPGGLASTGSLPFGVGLIKLAGGNVDLLISALEKKGQARRLAEPDLIALSGDTASFL 333 Query: 289 SGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIG 342 +GG++ +V SS+G T V T + YGV L F PTVL+ G I LR+ VSE + Sbjct: 334 AGGEYPVPSVQSSSGTTPVITTQYYPYGVQLTFIPTVLANGIINLRLNPSVSELDYKNVV 393 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 V AG +PS R+A TT+EL G + +AGLL+ D IP L +P+LGALF + Sbjct: 394 VTAGFAIPSITKREARTTIELRDGQSFAIAGLLQSDSTHDVNQIPWLGSVPVLGALFSSK 453 Query: 402 RFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNR--VNKIY 452 + + ET++ + TP LV P A + ++ P D +D F R V K Y Sbjct: 454 SYQQNETDLVVIVTPHLVAPAAPGQVVATPFDKTLPANDVDFFVMGRPEVRKQY 507 >gi|167624205|ref|YP_001674499.1| type II and III secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167354227|gb|ABZ76840.1| type II and III secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 478 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 119/416 (28%), Positives = 207/416 (49%), Gaps = 21/416 (5%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 ++I I ++V++L P+ V V +P+ AD+ + +Y+ GK +G N+++ + + Sbjct: 35 QRIPIFKSRVLMLNGPI--HRVSVGNPSIADIKLLPNDELYILGKQLGSTNIMIWDKNEQ 92 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 +DI + D+ L+ L +F+ + V+ ++L G +Q AVEL++ + Sbjct: 93 LARIMDIEVTHDLNGLKTRLHQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGY 152 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + + + KV+N++ I G+ QV L+V +AEV+R++ +Q + I S S Sbjct: 153 AEAAA----GDRAPSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFLIFNQGSNLS 208 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISG 282 GG G KG+ ++ L ++ + LAEP +TA+SG Sbjct: 209 GGVIGGGGGFDPGSIGGVDGKGLFAQYINGDLMMNFALDVAKQNGLAKVLAEPNVTAMSG 268 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 QSA F SGG+ V G T++ DYGV + F PTVL G+I L + VSE Sbjct: 269 QSAEFLSGGEFPIP-VPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTA 327 Query: 339 ---PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + G + + PS R TTVEL G TI ++GL+ D +++ + +P L +P+ Sbjct: 328 NGFSISGNTSTSLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPV 387 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 LG LF + F ++E+ I TP LV+ +D+S P D + + D + + +++ Sbjct: 388 LGQLFTSKSFQSGQSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLS 443 >gi|150377247|ref|YP_001313842.1| type II and III secretion system protein [Sinorhizobium medicae WSM419] gi|150031794|gb|ABR63909.1| type II and III secretion system protein [Sinorhizobium medicae WSM419] Length = 466 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 122/426 (28%), Positives = 213/426 (50%), Gaps = 20/426 (4%) Query: 33 NAAVINISDVEIGKG--KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 ++A N VEI + I + K + ++ ++++ DP A V + R+ Y+ Sbjct: 26 SSASANGDSVEISSNFSRSIRVAKGKTVTIRAVQRFDEIVIGDPEIATVTPLTDRSFYIL 85 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G +G +V + + + +DI + D L T+R+ + SN++V + +VL G Sbjct: 86 GNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIRQSVPGSNVKVTSANGRIVLSGS 145 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + +A +++ F + ++++N + I QV L V E+ RD+ Sbjct: 146 ATDAVAATQAEQIASRF-----------AGDEEIINSVKITSSQQVQLNVRFVEINRDVG 194 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 K++G + S + S S F + + G + + +S + + ALE R Sbjct: 195 KELGTRISAAYAWSNGSVEFNSRPRATSNTPAGSLIGSLIGEGYSVDVAIDALEDRGMAR 254 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP L A SG+++SF +GG+ VS G +V+ +GV L FTPTVLS G I L Sbjct: 255 RLAEPNLIARSGETSSFLAGGEFPIP-VSEDDGQIAVSYKKFGVGLDFTPTVLSDGLIAL 313 Query: 331 RIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I+ EVS V +P + VR+A T+V+L SG + ++AGLL+ + + + +P Sbjct: 314 DIEPEVSAIDNTASYRVRNISIPGFSVRRARTSVDLKSGQSFMIAGLLQSENNLITQRVP 373 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFF 445 L ++PILGALF + + R ET++ I TP LVKP+ ++ ++ P D +A+ FF Sbjct: 374 GLGQLPILGALFSSKAYQRRETDLVIIVTPHLVKPMDPLKKVASPSDRTKRPTEAE-FFL 432 Query: 446 NRVNKI 451 ++++ Sbjct: 433 GNIDEV 438 >gi|56477528|ref|YP_159117.1| outer membrane channel protein [Aromatoleum aromaticum EbN1] gi|56313571|emb|CAI08216.1| probable outer membrane channel protein,probably involved in pilus assembly [Aromatoleum aromaticum EbN1] Length = 566 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 128/413 (30%), Positives = 204/413 (49%), Gaps = 60/413 (14%) Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-S 134 + DV++ SP +YL GK+VG NV+L+ G LD+ + D+ ++ L + D + Sbjct: 118 QVDVLLLSPNEIYLLGKSVGSTNVVLVDRSGG-CTALDVTVAMDVTSVQGALTALLPDET 176 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 I+V D++VL G V RAVE++ ++ + N + +V+N+L++ Sbjct: 177 GIKVSSAYDSLVLTGTVSDATKVDRAVEIASAYVRDGDGGE--NGRNARVLNMLSVGAPQ 234 Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSK-------SFAADF 234 QV L+V +AEV + ++ + G S ++G G S + A Sbjct: 235 QVMLEVKVAEVSKAVMDRFGIDFSRAYAAGDGTMIRFLSGVFGGKSPVGGQVSGTVGARV 294 Query: 235 GGKFVSE-------------------GGDFSVKGVLDRFSFETVL--HALERATAIRTLA 273 GG V GGD + K L S T++ A + ++ LA Sbjct: 295 GGGIVDSISNASGTSAITAPIGDATIGGD-ATKVPLISGSNSTLIGVDAQKSDGLVKILA 353 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGL 330 EPT+ AISGQ SF +GG+ ++ VS + G T T ++GV + FTPTVL GRI L Sbjct: 354 EPTVMAISGQEGSFLAGGK-IFIPVSQNDGGTRTVTLEEKEFGVSVKFTPTVLEGGRINL 412 Query: 331 RIQTEVSE--------PVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 ++ EVSE GVN +PS+ R+A TTV+L G + + GL+K++ Sbjct: 413 AVRPEVSELNREGVGLTAPGVNGLAILPSFTTRRAFTTVQLRDGQSFAIGGLIKNNTTTN 472 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 + P L ++P++GALFR++ F + +E+ TP LVKP+ D + P D+Y Sbjct: 473 IKAFPFLGELPVIGALFRSTEFQTDRSELVFVITPRLVKPLP-EDYALPTDNY 524 >gi|239908021|ref|YP_002954762.1| bacterial type II and III secretion system protein family protein [Desulfovibrio magneticus RS-1] gi|239797887|dbj|BAH76876.1| bacterial type II and III secretion system protein family protein [Desulfovibrio magneticus RS-1] Length = 528 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 130/465 (27%), Positives = 227/465 (48%), Gaps = 73/465 (15%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 ++ V + ++++ + K +ILQ D+ V V+ P AD V+ SPR +Y+ G+ G N Sbjct: 34 VAPVAVRAAPRLALTIGKSVILQSDADIARVSVAQPDVADFVLLSPRQIYVTGRAPGITN 93 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDS 157 + L K D+ + D + L+ L + ++ I V D++ L G VR + Sbjct: 94 LTLWDKGDKIRAVYDLDVAPDASRLKKMLHDVMPGETGIEVLASQDSIALSGTVRDAESL 153 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--- 214 ++A+ L+E + + KKV+NLL+++G QV L+V +AE+ + ++ ++G Sbjct: 154 KKALSLAEVY------------APKKVLNLLSVSGVQQVMLEVRVAEMSKSVVNRMGINL 201 Query: 215 -------FQHSITGS---------------------------SSGPSKSFAADFGGKF-- 238 F +++ G S G S + +A +F Sbjct: 202 NAVGDGNFGYTLLGGLSTLADTVFNIDNVQNAYKYSTIKFNGSDGSSSTESATIQTRFRE 261 Query: 239 -----------VSEGGD---FSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 +S+G FS G + VL L++ ++ LAEP L ++GQ Sbjct: 262 FNQPEQSKTVGLSQGTAAMRFSTNWGGAGNTTMTAVLDLLKQNGLVKILAEPNLVCLNGQ 321 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339 SA F +GG+ + V S G TS+ ++GV L FTPTV I L++ EVS+ Sbjct: 322 SAKFLAGGE-IPVPVPSGLGTTSIEWKEFGVGLKFTPTVAGE-VISLQVNPEVSDLDYTR 379 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 I +++ ++P+ R+A T+VEL +G T +AGLLK++ ++ + P + IP+LG LF+ Sbjct: 380 AIKLDSFEIPAVLTRRASTSVELKNGQTFAIAGLLKEEGRESVDKYPWIGDIPVLGNLFK 439 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +S + ++++E+ I T LVKP+ +D+ P D DD + F Sbjct: 440 SSSYQKDQSELVILITAHLVKPLNKKDMILPTDGVHEPDDLEFFL 484 >gi|148253058|ref|YP_001237643.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1] gi|146405231|gb|ABQ33737.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1] Length = 496 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 131/438 (29%), Positives = 213/438 (48%), Gaps = 37/438 (8%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 ++IS+ +K +++ LV P ADV+ S R +Y+ GK +G NV L D Sbjct: 40 RQISVTRDKSRTIKLDKPFASALVGAPDIADVLPMSDRIVYIQGKKIGTTNVTLFDQDKN 99 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + + + + DI ++ +R IRV ++ +VL G R D+++AV ++ Sbjct: 100 VIGVIGLEVTIDIQNIASKIRSGTNSPGIRVSSSNNQIVLSGEARDAVDAEKAVAIARGM 159 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQHSITG--- 221 + K V+N + +A QV L+V EV R ++IG F + +G Sbjct: 160 ATPP----EGKDPEKYVINAMRVAASQQVMLRVRFIEVSRQAEREIGVNWFGANASGTRG 215 Query: 222 --------SSSGPSKSFAA--------DFGGKFVSEGGDFSVKGVLDRF-SFETVLHALE 264 S +GP+ + A F G +S + + ++ S + ++ ALE Sbjct: 216 INTGTGAISQAGPTATSAGVPVFNTIGTFAGSTLSAPFGVGLFNLANKGGSVDVLITALE 275 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPT 321 + R LAEP L A+SG +ASF +GG++ +V SS+G T V T +GV L F PT Sbjct: 276 KKGLARRLAEPDLVALSGDTASFLAGGEYPVPSVQSSSGTTPVITVLYKPFGVQLTFVPT 335 Query: 322 VLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VL+ G I LR+ VSE + ++ +P+ R+A T +EL G + +AGLL+ D Sbjct: 336 VLASGIINLRLTPSVSELDYTNAVAISGTLVPALSKREARTAIELRDGQSFAIAGLLQSD 395 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSV 436 + +P L +P+LG LFR++ + ++ET++ + TP LV P A + L+ P D Sbjct: 396 NLRDVGQLPWLGSVPVLGTLFRSTSYQQKETDLVVIVTPHLVAPAAPGQALATPFDKQLP 455 Query: 437 EDDAKAFFFNR--VNKIY 452 +D F R V K Y Sbjct: 456 GNDVDLFLMGRPEVRKQY 473 >gi|212635453|ref|YP_002311978.1| Flp pilus assembly protein [Shewanella piezotolerans WP3] gi|212556937|gb|ACJ29391.1| Flp pilus assembly protein [Shewanella piezotolerans WP3] Length = 479 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 121/428 (28%), Positives = 206/428 (48%), Gaps = 44/428 (10%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 +KI I ++V++L+ PV V V +P+ AD+ + +Y+ GK +G N+++ D + Sbjct: 35 QKIPIFKSRVLMLEGPV--HRVSVGNPSIADIKLLPNDELYILGKQLGSTNIMIWDKDEQ 92 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 +DI + D+ L+ L F+ + V+ ++L G +Q AVEL++ + Sbjct: 93 LSKIMDIEVTHDLNGLKTRLHEFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGY 152 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--- 224 + ++ +V+N++ I G+ QV L+V +AEV+R++ +Q + I Sbjct: 153 AEAAA----GGTAPSRVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGDHLA 208 Query: 225 --------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 G ++V+ GD + LD ++ + Sbjct: 209 GGVIGGGGGGFAPGGIGGVDGKGLFAQYVN--GDLLMNFALD---------VAKQNGLAK 257 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP +TA+SGQSA F SGG+ V G T+V DYGV + F PTVL G+I L Sbjct: 258 VLAEPNVTAMSGQSAEFLSGGEFPIP-VPGENGNTTVEYRDYGVGVKFVPTVLDSGQINL 316 Query: 331 RIQTEVSE-------PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + VSE + G + + PS R TTVEL G TI ++GL+ D +++ Sbjct: 317 NLNVVVSEISTANGFTISGNTSTSLVVPSLTKRSTATTVELADGQTIAISGLISDTLREN 376 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 + +P L +P+LG LF + F ++E+ I TP LV+P D+S P D + + D + Sbjct: 377 IDKLPGLGDVPVLGQLFTSKSFQNGQSELVILVTPRLVRPFNRNDISLPTDGFVLPSDVE 436 Query: 442 AFFFNRVN 449 + +++ Sbjct: 437 FYLLGKLS 444 >gi|157375508|ref|YP_001474108.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis HAW-EB3] gi|157317882|gb|ABV36980.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis HAW-EB3] Length = 483 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 114/417 (27%), Positives = 206/417 (49%), Gaps = 23/417 (5%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +L++ + V V +P D+ + +Y+ GK +G N+++ + + + +DI I Sbjct: 49 VLKLKQAIHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIMVWDKNEQLVDVIDIEITH 108 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D+ L+ L F+ + V+ +++ G +Q AVEL++ + + ++ + Sbjct: 109 DLNGLKTRLHEFLPGEKLGVQTSQGQLLISGQASNLQKMNTAVELAQAYADAASVSKVKS 168 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQHSITG--SSSGPSKSFA 231 + V+N++ + G+ QV L+V IAEV++++ +Q F G ++G +F Sbjct: 169 T----VLNMMTVGGDHQVMLEVVIAEVQKEVARQFDSKFFIFNKGDKGFIGTAGAGGTFD 224 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D S G F + + L ++ + LAEP +TA+SGQSA F SGG Sbjct: 225 LDPAAAIDSRG--FFARYLDGNLMMNFALDVAKQHGLAKVLAEPNVTAMSGQSAEFLSGG 282 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD 347 + V + G+T++ D+GV + F P+VL G+I L + VSE + ++ G Sbjct: 283 EFPIP-VPGTNGSTTIQYRDFGVGVKFVPSVLDSGQINLNLNVMVSEVSNANSVTLSGGS 341 Query: 348 -----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +PS R TTVEL G TI ++GL+ D +++ + +P L IPILG LF + Sbjct: 342 NTALVVPSIVKRTTATTVELADGQTIAISGLISDTLRENIDKLPGLGDIPILGQLFTSKS 401 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 F ++E+ I TP LV+P + +S P D + + D + + +++ +E E Sbjct: 402 FQSGQSELVILVTPRLVRPFNKKQISLPTDDFVLPSDMEFYLLGKMSHKQSEQEKHE 458 >gi|19749313|gb|AAL98683.1| Y4xJ [Sinorhizobium fredii] Length = 411 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 119/384 (30%), Positives = 181/384 (47%), Gaps = 44/384 (11%) Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 + +P + V+DP AD S RT+++FGK G+ ++ + +G+ + L +++ + Sbjct: 35 VHLPAPAATIFVADPPIADYQAPSNRTIFVFGKKFGRTSLFALDENGEALAELHVVVTQP 94 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 I L LR + D I V +L G + A ++E FL Sbjct: 95 IGDLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAEVVDIAKRVTEQFLGDG-------- 146 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---G 236 ++N + +AG QV L V +AEV R LK +G S G G K + G G Sbjct: 147 --APIVNNIKVAGSLQVNLSVRVAEVSRSSLKALGINLSAFGQF-GNFKVGVLNRGAGLG 203 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 GG + D S VL AL + LAEP LTA+SG++ASF +GG+ Sbjct: 204 SATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLAEPNLTAMSGETASFLAGGE---- 259 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352 F PTVL I + ++ EVSE + VN +P+ Sbjct: 260 ---------------------FVPTVLDNNLINIHVKPEVSELSLQGAVQVNGIAVPAVS 298 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ADT VEL SG + V+ GL++ ++ P L +IPILGALFR+S F +EE+E+ I Sbjct: 299 TRRADTVVELASGQSFVIGGLIRRNVNNDISAFPWLGRIPILGALFRSSSFQKEESELVI 358 Query: 413 AATPFLVKPVAMRD-LSRPDDHYS 435 TP++V+P + + +S P D + Sbjct: 359 LVTPYIVRPGSNPNQMSAPTDRMA 382 >gi|167836689|ref|ZP_02463572.1| RhcC2 [Burkholderia thailandensis MSMB43] Length = 460 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 126/431 (29%), Positives = 217/431 (50%), Gaps = 33/431 (7%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +L++P V ++DP ADV V +P+++++ GK G + +G + + +L I++ Sbjct: 47 MLKLPEPAGAVFIADPDVADVHVPTPQSVFVLGKKAGTTTLFALGSNNRTILRETIVVNA 106 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L + ++ + ++++ G V + D+ V+ + +L + Sbjct: 107 DTPTLQRILDARFPNLHLTLTSAPGSLMVAGHVPSPSDADAVVQTLKPYLHEK------- 159 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++N + +A QV L+V + E+ R+I +Q+G S G+S F G+ Sbjct: 160 ---ETLVNRMTLARPIQVHLRVRVTEIDRNITQQLGINWSAIGASG---NFVGGLFNGRT 213 Query: 239 V----------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S G FSV G R+S + VL AL++ I LAEP LT +SG++AS Sbjct: 214 LFDPTSRLFNLSPTGAFSVLGGFHTSRYSVDGVLDALDQEGLITMLAEPNLTTMSGETAS 273 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGV- 343 F +GG+ +TGA ++ +GV L FTPTVL+ RI L+++ EVSE PV V Sbjct: 274 FLAGGEFPIPVSQDTTGAITIEFKPFGVSLDFTPTVLADNRISLKVRPEVSEIDPVNSVT 333 Query: 344 -NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 N +P+ VR+ +TTVEL SG + + GLL+ + +P L+++P+LG LF + Sbjct: 334 SNGIRVPALTVRRVETTVELSSGQSFAIGGLLQSKTSDVLAELPGLARLPVLGKLFSSKN 393 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 + ++TE+ + TP++V+PV +L D + + R I + + Sbjct: 394 YLNDKTEVVVIVTPYVVQPVGPGELRDALDSVTQPSSDIEYVLQRAIGI----DPLSGDL 449 Query: 463 QNYKGAIGFIY 473 GA GFIY Sbjct: 450 PRLVGAAGFIY 460 >gi|209546483|ref|YP_002278401.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537727|gb|ACI57661.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 495 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 127/428 (29%), Positives = 209/428 (48%), Gaps = 42/428 (9%) Query: 42 VEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 V +GK +++++ N + L D+++ DVV S +++++ GK +G N+ Sbjct: 42 VTLGKSVQRVTLPPNATLTLNTGQAFGDLVIGSADMIDVVPLSDKSLFIRGKKIGATNIS 101 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + G D + +D+ + D + + +R + + V SD + L G+VR + QR Sbjct: 102 VYGDDKSLLGVIDVRVASDFSEVAAAIRSAAPSARVIVANSSDRIRLTGIVRDGVELQRV 161 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 +++++++ S + V+N L ++ QV L+V + E R + +G S Sbjct: 162 MDIAQSY------------SDQPVLNQLRVSDSQQVMLEVRVIEASRQTGRDLGIGWSGR 209 Query: 221 GSS----SGPSKSFAADFGGKFV--------SEGGDFSVKGVLDRF------SFETVLHA 262 G++ + S+ D G V + G ++ + + V++A Sbjct: 210 GNNGIGKATTSQGLGVDDNGSLVRTLVDPKGAATGALPFGQLIAKVLEISGGHIDVVINA 269 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVLHFTP 320 LE+ +R LA+P L A+SG +ASF +GG+ L T + +T AT +GV L F P Sbjct: 270 LEQKGLVRRLAQPNLIAMSGSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKP 329 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD---- 376 VL G I L I+ EVSE +N P + R A TTV L G + LAGLL+ Sbjct: 330 VVLDDGLINLEIEPEVSELDPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAK 389 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYS 435 DIQQL P L KIPILGALFR++ F ++E+++ I TP +V+P DL P D Sbjct: 390 DIQQL----PGLGKIPILGALFRSTSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTR 445 Query: 436 VEDDAKAF 443 +D + F Sbjct: 446 SSNDVELF 453 >gi|114799407|ref|YP_759869.1| type II/III secretion system protein [Hyphomonas neptunium ATCC 15444] gi|114739581|gb|ABI77706.1| type II/III secretion system protein [Hyphomonas neptunium ATCC 15444] Length = 432 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 125/390 (32%), Positives = 189/390 (48%), Gaps = 34/390 (8%) Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 ++V+DP A+ + S R+ ++ GK G V++ G +++ ++ + L L Sbjct: 55 IVVADPEIAEAMPTSNRSFFVRGKKPGGTTVLIYDEAGAIAELIEVEVKLGLDELRGDLG 114 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 R + I V V D V L G V T + A++L+E + V N L Sbjct: 115 RLLPGEIIDVYAVHDGVYLDGKVTTAAAADMALQLAERHVPGG------------VANGL 162 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSGPSKSFAADFGGKFVSEG 242 ++ QV L+V E R +++IGF ++I G+ G F + G Sbjct: 163 SVGQSQQVMLEVRFLEASRKAVREIGFGNTIDANDVVAGTEGGTVSGLLEKTLAVFTNVG 222 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G+ + + L ALE IRTLAEP L A+SG +ASF +GG+ VSS Sbjct: 223 GE----------NIDVSLRALEEKGVIRTLAEPNLVALSGDTASFLAGGEFPIP-VSSRD 271 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADT 358 +V +GV L FTPTVL G + LR++ EVS + G+ A D+P VR+ADT Sbjct: 272 NEVTVEFKKFGVSLDFTPTVLGDGLVNLRVRPEVSALDRGNGIRASNIDIPGVSVRRADT 331 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TVEL G +AGLL+++ P L +PILG+LF + R+ R ETE+ I TP L Sbjct: 332 TVELHDGQAFAIAGLLQNNYTNDVRQTPWLGNVPILGSLFSSKRYQRNETELVIIVTPRL 391 Query: 419 VKPVAMRD-LSRPDDHYSVEDDAKAFFFNR 447 V+P + + + P D S +A+ F + Sbjct: 392 VQPFSHPEAIVSPLDSVSEPTEAELFLLGK 421 >gi|170692564|ref|ZP_02883726.1| type II and III secretion system protein [Burkholderia graminis C4D1M] gi|170142220|gb|EDT10386.1| type II and III secretion system protein [Burkholderia graminis C4D1M] Length = 614 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 124/420 (29%), Positives = 212/420 (50%), Gaps = 33/420 (7%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + + K ++Q V++ + +P A + SP+T+Y+ G VG N+I+ G G Sbjct: 91 VVVPVGKSTLMQTAEPVRNRTLGNPLIAQATMVSPKTLYVVGMAVGTTNMIVQGKSGACE 150 Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +++++ D L+ +L + + D NIRV V+ +VL G V + Q + +A E+++ + Sbjct: 151 V-INVVVNADAGGLQTSLSQLMPDEPNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYA 209 Query: 169 SQS------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + N N S V+N++++ QV L+V +AEV + +L Q+G +I G Sbjct: 210 RTTLPNPNGAANGNGNGKSATVLNMMSVDSPQQVMLEVKVAEVSKTVLNQLGAAMNIQGG 269 Query: 223 SSGPSKSFAADFGGKFVSE--GGDFSVKGV--LDRFSFETVLHALERATAIRTLAEPTLT 278 F + + G +S G S+ V + F + A ++ LAEP L Sbjct: 270 -------FGS-WSGALISSLLAGVSSIVDVNKANNRPFNVAIDAQHGDNLVKILAEPNLV 321 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +SGQ A+F +GG+ S+ S + ++GV L FTPTVL+ GRI L++ E Sbjct: 322 TLSGQEATFLAGGKVFIPIPQSNLNGVSTIILQEEEFGVGLKFTPTVLAGGRINLKVAPE 381 Query: 336 VSE-PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE GV G +P R+A TTV++ G T + GL+K + + IP Sbjct: 382 VSELSSTGVTVGATNTNNLTVLPLITTRRASTTVQMNDGETFAIGGLIKSNAAGTLKAIP 441 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFF 445 + ++P+LGALFR++ + ++ TE+ TP LVKP+ +L P DH ++A + Sbjct: 442 GVGEVPVLGALFRSTSYQQDRTELVFIITPHLVKPLQTASNLPLPTDHLKTPNEADVYLM 501 >gi|323700359|ref|ZP_08112271.1| type II and III secretion system protein [Desulfovibrio sp. ND132] gi|323460291|gb|EGB16156.1| type II and III secretion system protein [Desulfovibrio desulfuricans ND132] Length = 476 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 118/426 (27%), Positives = 207/426 (48%), Gaps = 47/426 (11%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V+ K IS+ + + ++ +V + + T +VV SP +YL +G + L Sbjct: 31 VKSDKPDMISMIIGESTVITTDQNVSRITLGSDTVCSIVVISPTQIYLTANEIGSTTLTL 90 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 D + DI ++ D L+ + + ++N+RV +++ L G V Sbjct: 91 WTGDRVSEI-YDIAVDPDTTRLKRMIYELLPQENNVRVLTSGNSITLSGQVSNATSLSSV 149 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + L+E ++ +V+NLL++ G QV L+V +AE+ R + K++G + Sbjct: 150 LSLAEA------------AAPGRVVNLLSVDGIQQVMLEVRVAEMSRSVTKRLGLNFAAI 197 Query: 221 GSS-------------SGPSKSFAA----DFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 GS+ + F + G +VS G+ ++ G++D AL Sbjct: 198 GSNFSIYSIINNLTSYNNEDNVFELTDNINLAGSYVS--GNTTIHGMVD---------AL 246 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + +R LAEP LT +SG++A F GG+ + + S+ G + +G+ L FT TV+ Sbjct: 247 KSNGLVRMLAEPNLTCVSGEAAEFLVGGE-VPIPMPSALGTVGIDYKPFGIALKFTATVM 305 Query: 324 SPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 S GRI L++ EVSE + V+ ++P+ R+A+T VEL G + V+AGL+ D ++ Sbjct: 306 SSGRINLQVNPEVSELDYSKALSVSGYEIPTISTRRANTVVELGDGQSFVIAGLISDSLK 365 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 + P L ++P+LG+LF + FN +TE+ + T L KPV M + P D + DD Sbjct: 366 ENAHKFPGLGEVPVLGSLFSSKDFNSNKTELVVLVTAHLAKPVDMATQTLPTDGFREPDD 425 Query: 440 AKAFFF 445 + + F Sbjct: 426 REFYLF 431 >gi|261252087|ref|ZP_05944660.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] gi|260935478|gb|EEX91467.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] Length = 480 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 127/431 (29%), Positives = 214/431 (49%), Gaps = 33/431 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 GK +++ +K + + + V + DP D+V+ ++L GK +G N++ G Sbjct: 18 GKIVTVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDEVFLIGKKLGSTNLMAWDSRG 77 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + +++I + D+ L+ L F+ D I+V ++L G V + A+ ++ET Sbjct: 78 QLIESINIEVTHDLNSLKAKLFEFLPDEEIKVHSAQHRLILSGQVSSQSVMNIALRVAET 137 Query: 167 FLS----QSGRNQYANS-SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI-------- 213 + + G++ +N +S V+NLL I G QV L+VT+AEV+R ++++ Sbjct: 138 YSAGKEADKGKSSLSNQVNSTGVINLLTIGGAQQVMLEVTVAEVQRTLVRKFDANFHFFQ 197 Query: 214 --GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERA 266 G + S G+S+G + G + G S G+L F F L ++ Sbjct: 198 TSGGEFSWGGTSAGGVIDDVNNVIGPIFNAPGVEST-GLLGTFIDSNTLFTFALDIAKQN 256 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP LTA+SG A F +GG+ V S G T + +YGV L F PTVLS Sbjct: 257 GTAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPSEDGIT-IEYKEYGVGLKFIPTVLSDK 314 Query: 327 RIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 +I L + +VSE + +N G +P R A +T+EL G TI +AGLL + Sbjct: 315 KINLNLAVDVSELATSTTLTLNPGATNGTYVIPPITRRSASSTLELADGQTIGIAGLLSE 374 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 +++ + E +P S IP+LG +F + + ETE+ I TP L KP+ R ++ P + + Sbjct: 375 NVRDVVEEMPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRRRITLPTESFVE 434 Query: 437 EDDAKAFFFNR 447 +D + + R Sbjct: 435 PNDFEYYLLGR 445 >gi|238789148|ref|ZP_04632936.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC 33641] gi|238722680|gb|EEQ14332.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC 33641] Length = 415 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 112/380 (29%), Positives = 192/380 (50%), Gaps = 28/380 (7%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 I+ ++ V VS AD + ++ ++ KN G A L HD K + +L+ Sbjct: 21 IINTQDEINTVFVSAAAIADYELIGKNSIIVYAKNEGVAEFTLFNHDHKAITKSVVLVNN 80 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQ---SGRN 174 I + ++ +SNI + + + +L G+V + + V + E S+ + R+ Sbjct: 81 IIPSVHRRIQAEYPESNIDINKIGSSYILTGLVESEEVRDTVVNIIGEAIGSKRINNDRH 140 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 N++ ++N + ++ +QV +K+TIAEV +D + IG S G S G + F Sbjct: 141 PVGNTNHTNIINKIKLSQSNQVNVKLTIAEVTKDFTENIGINWSTIGESVGSFQLF---- 196 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 F+ KG+ T++HA+ R LAEP L+ +SG+ ASF GG+ Sbjct: 197 ---------KFNAKGI------STLVHAINDNAIARVLAEPNLSVLSGEDASFLVGGE-- 239 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGD-MPSY 351 V+++ ++V+ ++G+ L+ V RI + + EVS +N GD PS Sbjct: 240 IPIVNTTQNGSAVSYKEFGIKLNIGAKVNDKKRIRIILNEEVSSIGKTFNINGGDSYPSI 299 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R RKA TT+EL G + +L GL+ + ++ + IPL+ IP+LGA FRN++ + +TE+ Sbjct: 300 RTRKAATTLELGDGESFILGGLISRNERESLKKIPLMGDIPLLGAFFRNAQTEQSQTELV 359 Query: 412 IAATPFLVKPVAMRDLSRPD 431 + AT LV PVA +++ PD Sbjct: 360 VIATVNLVNPVAEKEVELPD 379 >gi|319940440|ref|ZP_08014785.1| type II and III secretion system protein [Sutterella wadsworthensis 3_1_45B] gi|319806066|gb|EFW02815.1| type II and III secretion system protein [Sutterella wadsworthensis 3_1_45B] Length = 530 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 128/464 (27%), Positives = 210/464 (45%), Gaps = 77/464 (16%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 L + +LQ+P VLV+ P A + SP ++ FG G + G + + Sbjct: 80 LKEGALLQLPSAAAKVLVATPGIASYQMPSPDQVFFFGTAAGSTTFYALDEAGAVIAAVQ 139 Query: 114 ILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 + +E ++ L+ ++R + ++I V +++ +++ G V+T DS+R +L E++L S Sbjct: 140 VTVEHNLEKLKADIKRAVPSASIELVPALNNRMIVRGKVKTALDSRRVTQLVESYLVSSA 199 Query: 173 ------------------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + A S V+N L + QV ++V + EV R + +G Sbjct: 200 AAGGPGQGSQQGGQDGGGQGGSAGGQSSPVINQLKVEVSQQVNIQVRVVEVSRSLTHSLG 259 Query: 215 FQ-------------------------HSITGSSSGPSKSFA----------ADFGGKFV 239 F H+ S P+ SFA D Sbjct: 260 FNWGAVLNTGRGPLFLGNGTSQGLFSTHAANNSHFNPNDSFADGNANIPGLMPDSNTAGA 319 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + GG F+ + R S +++A+ + LAEP LTA+SGQ A+F SGG+ ++ Sbjct: 320 ALGGIFN----MGRMSLGVLINAMSESGFASLLAEPNLTAMSGQPAAFASGGEVPIVIIT 375 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYRVR 354 ++ ++ +GV+L TPTVLSP RI + + EVSE VI +P+ RVR Sbjct: 376 GNS--ITIDYKSWGVILRMTPTVLSPNRIAIHVAPEVSELTSEGQVILSEGSVIPAVRVR 433 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +A+TTVEL SG + LAG+L+ + Q G+P L +P +G LF + E++E+ I Sbjct: 434 RAETTVELASGQSFALAGMLRSESSQTVNGVPGLRNLPFVGRLFEYEQTQVEDSELVILL 493 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 T +V PV+ DL P + D Y P++AS Sbjct: 494 TANIVDPVSSGDLRVPGRGINAVDA------------YAPRQAS 525 >gi|148976662|ref|ZP_01813349.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium SWAT-3] gi|145964013|gb|EDK29271.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium SWAT-3] Length = 456 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 120/416 (28%), Positives = 204/416 (49%), Gaps = 27/416 (6%) Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 V + DP D+V+ ++L GK +G N++ G+ + +++I + D+ L+ L Sbjct: 18 VSLGDPEVLDIVILKSNEVFLIGKKLGATNLMAWDARGQLIESINIEVTHDLNSLKAKLY 77 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK----- 183 F+ D I V + ++L G + Q A+ ++ET+ + ++ S S++ Sbjct: 78 EFLPDETIEVHSAQNRLLLSGQISNQQKMNVAMRIAETYAAGQAADETKESGSEQAAATG 137 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQHSITGSSSGPSKSFAADFGGKF 238 V+NL++I G QV L+VT+AEV+R ++++ FQ S + S G + A G Sbjct: 138 VINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQTSGSNFSWGGASVPAGVLGATP 197 Query: 239 VSEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + + + G+L F F L ++ + LAEP LTA+SG A F +GG+ Sbjct: 198 IFDIPTSTDYGILGSFIDSNTLFTFALDVSKQNGVAKVLAEPNLTALSGSKAEFLAGGEF 257 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD-- 347 V G T + +YGV L F PTVLS +I L + +VSE + ++ G Sbjct: 258 PIP-VPDDDGIT-IEYKEYGVGLKFIPTVLSDQKINLNLAVDVSEIANSSSLTIDPGTTN 315 Query: 348 ----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +P R A +T+EL G TI +AGLL ++++ + + + +PILG LF + + Sbjct: 316 ATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDISNKMLGIGDVPILGQLFNSQEY 375 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 ETE+ I TP L KPV ++ P D + +D + + R I P ++ + Sbjct: 376 VSGETELVILVTPRLAKPVDRSKVTLPTDAFVDPNDLEYYLLGRSAYIAEPSDSED 431 >gi|288956969|ref|YP_003447310.1| pilus assembly protein [Azospirillum sp. B510] gi|288909277|dbj|BAI70766.1| pilus assembly protein [Azospirillum sp. B510] Length = 491 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 122/443 (27%), Positives = 209/443 (47%), Gaps = 38/443 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + +G ++++ L P +V V+DP ADV S +++ G+ G+ V + + + Sbjct: 68 LDVGTSEMVRLSAPAT--NVYVADPEIADVQAASGTVIFVLGRKPGRTTVYALTEGDRVV 125 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 L+ DI + +A L + + V + +++ G V T ++ +EL F Sbjct: 126 LHRDIRVIHSLAPLREQITARFPGMPVTVTSAPNRLIVTGEVPTPAIAESVMELVNGFAR 185 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 KV+N + + G QVTL+V +AEV R + +++GF G+ + Sbjct: 186 ----------PDDKVVNQMAVTGPVQVTLRVQVAEVARSVTQELGFNWE--GAVKIGDFA 233 Query: 230 FAADFGGKFV---------SEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPT 276 A FG F+ S G S+ G+L + + ++ A++ + LA+P Sbjct: 234 IAPGFGRDFLNATSGAIQRSATGASSLAGILKSSNGKANIAGIVDAMQDQGLVTLLAQPN 293 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQT 334 L A+SG+ A F +GG+ + +G+ + YGV L+F PTVL+P RI L ++ Sbjct: 294 LVAMSGKPAMFLAGGEFPIPVSAGDSGSNKIQVEFKQYGVALNFVPTVLAPDRIALTVRP 353 Query: 335 EVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE + VN +P+ VR+ +T+VEL SG + + GLL++ + + P L Sbjct: 354 EVSELTDVGAVTVNGLTIPALTVRRVETSVELGSGESFAIGGLLQNSNRSSLKKFPGLGD 413 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 +P+LG LFR+ RF ETE+ + TP++V P+ P + + R Sbjct: 414 LPVLGELFRSRRFINNETELVVIVTPYVVNPIQRGPGVIPQRGTKPNREVEELLRRRQQA 473 Query: 451 IYGPKEASEVEGQNYKGAIGFIY 473 + P+ A +Y G GFIY Sbjct: 474 LGLPEPAG-----SYYGPAGFIY 491 >gi|149909547|ref|ZP_01898201.1| general secretion pathway protein D [Moritella sp. PE36] gi|149807452|gb|EDM67403.1| general secretion pathway protein D [Moritella sp. PE36] Length = 432 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 198/386 (51%), Gaps = 40/386 (10%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 ++ V ++DP AD V + +FGK +G ++I+ +G + N ++I + + H++ Sbjct: 30 EIASVFIADPEIADYQVIDANKVVVFGKKIGSTSIIVFDENGDTITNNKLVINKSLVHIQ 89 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD------------SQRAVELSETFLSQSG 172 ++ ++++ + V D VVL G+V T Q+ ++++ + + S Sbjct: 90 QQIQLKYPNADVTIYNVGDQVVLSGIVATEQEKDDINIIVGELLNKKSDDYIIQWESTGT 149 Query: 173 RNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 +Y K+ ++N + +A QV +K++IAEV L+ G ++S G +SG Sbjct: 150 DTKYEMEFMKRRHFAGIVNNIEVAAVKQVNVKLSIAEVSHSFLENFGIEYSSIGQTSGT- 208 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 FV+ FS + +V+ A+ + + LAEP L+ ISG+SASF Sbjct: 209 ----------FVNLVTKFSASDI------ASVITAIADDSVGQILAEPNLSVISGESASF 252 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG- 346 GG+ V+ G T+V +YGV L VL +I L + EVS ++G Sbjct: 253 LVGGE--LPVVTVVDGTTNVLYKEYGVRLSLMAKVLRDDKIILSLSPEVSTLDNQYSSGT 310 Query: 347 -DMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIPLLSKIPILGALFRNSRFN 404 ++P+ + R+A TTVEL G + VLAGLL +D++ +K+ IP L IPILGALFR+S Sbjct: 311 YNLPALKTRRARTTVELGDGQSFVLAGLLNTEDVESIKK-IPFLGDIPILGALFRSSSTQ 369 Query: 405 REETEIFIAATPFLVKPVAMRDLSRP 430 R +TE+ I AT LVKP+ + P Sbjct: 370 RNKTELIIVATVNLVKPIHASQVQLP 395 >gi|260771478|ref|ZP_05880403.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio furnissii CIP 102972] gi|260613604|gb|EEX38798.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio furnissii CIP 102972] gi|315181060|gb|ADT87974.1| Flp pilus assembly protein, secretin CpaC [Vibrio furnissii NCTC 11218] Length = 489 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 122/440 (27%), Positives = 211/440 (47%), Gaps = 34/440 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 GK +++ +K +++ V + DP D+V+ ++L GK +G N++ G Sbjct: 25 GKVVTVPHHKSTYVKLQGAASRVSLGDPEVLDIVMLKADELFLIGKRLGSTNLMAWDRRG 84 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + +++I + D+ L+ L F+ + I V + ++L G V + + A+ L+ET Sbjct: 85 QLLESINIEVTHDVNSLKAKLYEFLPNETISVHSAQNRLILSGQVSSQEKMNLALRLAET 144 Query: 167 FLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + S ++ +S +K+ V+NL++I G QV ++VT+AEV+R ++++ F + Sbjct: 145 YASGDTADKATDSRNKEAEKTGVVNLMSIGGAQQVMIEVTVAEVQRSLVRR--FDSNFHF 202 Query: 222 SSSGPSKSFAADFGGKFVSE-----GGDFSV-----KGVLDRF-----SFETVLHALERA 266 S+ A G ++ + G F+ G+L F F L + Sbjct: 203 FEGNGKFSWGATSAGGYIDDITGVAGPVFNAPTIDSTGLLSTFIDGDTLFTLALDVAKEN 262 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP LTA+SG A F +GG+ + + ++ +YGV L F PTVLS Sbjct: 263 GVAKVLAEPNLTALSGAKAEFLAGGE--FPIPVPNRDGITIEYKEYGVGLKFIPTVLSDK 320 Query: 327 RIGLRIQTEVSEPVI---------GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 +I L + +VSE G NA +P R A +T+EL G TI +AGLL + Sbjct: 321 KINLNLAVDVSEIASSTTLTVSPSGTNAAYYIPPITRRSAASTLELADGQTIGIAGLLSE 380 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 +++ P + IP+LG LF + + ETE+ I TP L KP+ + P D + Sbjct: 381 NVRDSVSKFPGIGDIPVLGQLFNSQEYVSGETELVILVTPRLAKPIDRSKVVLPTDAFVE 440 Query: 437 EDDAKAFFFNRVNKIYGPKE 456 D K + + I GP++ Sbjct: 441 PTDLKYYLLGQGAYIAGPRD 460 >gi|86360580|ref|YP_472468.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42] gi|86284682|gb|ABC93741.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42] Length = 495 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 127/421 (30%), Positives = 206/421 (48%), Gaps = 41/421 (9%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + +++ N+ + L D+++ DVV S +++++ GK G N+ + G D Sbjct: 49 QHVTLPPNETLTLNTGQPFGDLVIGSADMIDVVPLSDKSLFIRGKKTGATNISVYGDDKS 108 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +DI + D + + +R + +RV +D + L G VR + QR +E+++++ Sbjct: 109 LLGVIDIRVASDFSEVASAIRSAAPSARVRVINSNDRIRLTGFVRDGIELQRVMEIAQSY 168 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---- 223 S + V+N L ++ QV L+V + E R + +G S G++ Sbjct: 169 ------------SDQPVLNQLRVSDSQQVMLEVRVIEASRQTGRDLGIGWSGYGNNNRIG 216 Query: 224 -SGPSKSFAADFGG--------KFVSEG----GDFSVKGV-LDRFSFETVLHALERATAI 269 + S+ A D G K + G G K + + + V++ALE+ + Sbjct: 217 KATTSQGIAVDDGSLARTLLDPKGAATGALPFGQLIAKVLEISGGHIDVVINALEQKGLV 276 Query: 270 RTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 R LA+P L A+SG +ASF +GG+ L T + +T AT +GV L F P VL G Sbjct: 277 RRLAQPNLIAMSGSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGL 336 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD----DIQQLKE 383 I L I+ EVSE +N P + R A TTV L G + LAGLL+ DIQQL Sbjct: 337 INLEIEPEVSEIDPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQL-- 394 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKA 442 P L +IP+LGALFR++ F ++E+++ I TP +V+P DL P D +D + Sbjct: 395 --PGLGQIPVLGALFRSTSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVEL 452 Query: 443 F 443 F Sbjct: 453 F 453 >gi|209809170|ref|YP_002264708.1| type II/III secretion system protein [Aliivibrio salmonicida LFI1238] gi|208010732|emb|CAQ81123.1| type II/III secretion system protein [Aliivibrio salmonicida LFI1238] Length = 445 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 118/388 (30%), Positives = 198/388 (51%), Gaps = 36/388 (9%) Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 + V D+ V +SDP AD V R + ++GK++G ++V++ G G + N I++ + Sbjct: 40 ISVEQDISSVFLSDPKIADYQVIDKRKIVIYGKSIGSSSVLIFGEKGNTLSNKKIMVNKS 99 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--------------SQRAVELSE 165 +A ++ + D+ + + V + VVL+G V T Q+ S++ + + Sbjct: 100 LATIQQYISVKYPDTAVDIFNVGEQVVLNGTVSTEQEKDEINGIVGELLEKSRKDFQFEQ 159 Query: 166 TFLSQSGRNQYANSSSKK-VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 Q Q+ + V+N + +A QV +K++IAEV + L+QIG Q+ G+S Sbjct: 160 DMEDQDYEIQFMERHEYEGVVNNIVVATTKQVNVKISIAEVSQSFLEQIGIQY---GTS- 215 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 A G FV FS ++ +V+ A+ + + LAEP L+ ISG+S Sbjct: 216 -------ASVPGVFVQPLTSFSSSDIM------SVITAIGNDSVGQILAEPNLSVISGES 262 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342 ASF GG+ V++ +T+V ++GV L V +I L + EVS + Sbjct: 263 ASFLVGGE--LPVVTTVNNSTNVVYKEFGVRLDLMAKVKKDDKITLSLVPEVSSLDTQYE 320 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++ ++P+ + R+A TTVEL G + VL GLL + ++ + +P + IPILGALFRNS Sbjct: 321 NDSYNLPALKTRRARTTVELGDGQSFVLGGLLNSEDKESLQKVPFIGDIPILGALFRNSV 380 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430 R +TE+ I AT LV+P+ + P Sbjct: 381 TQRNKTELIIVATVNLVQPIHPSQIQLP 408 >gi|197106459|ref|YP_002131836.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1] gi|196479879|gb|ACG79407.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1] Length = 484 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 122/406 (30%), Positives = 200/406 (49%), Gaps = 32/406 (7%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 VE GKG+ +I L P V ++DP ADV V SP +Y+ GK G ++ Sbjct: 39 VEAGKGR--------LIRLDRPAAT--VFIADPKIADVQVKSPTLVYVLGKAPGATSLFA 88 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + + + +L + + D A L+ L+R +S I+VE V ++L G + + + Sbjct: 89 LDAGERMIADLAVNVGIDTARLDQALKRHAPNSQIQVESVDGALILSGKAGSAAEGADIL 148 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG------- 214 ++ F+ G + + +++N + + +Q+ L V +AEV + + +G Sbjct: 149 RIAAEFVPGEG-----EARAGRLINRIVVEQPNQINLHVRVAEVSKQAREVLGVNWDAMG 203 Query: 215 -FQHSITGSSSGPSKSFAADFGGKFVSE--GGDFSVKGVLD-RFSFETVLHALERATAIR 270 + G ++G + F + S G D V D ++ AL++ ++ Sbjct: 204 LLGEGMVGLATG-RQIFTNPASRETFSRLNGTDTIVGSYQDGDLDLNVLVDALKQKGLVK 262 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP LTA+SG+ ASF +GG++ ++ +GV L F TVL GRI L Sbjct: 263 VLAEPNLTAVSGEPASFLAGGEYPIPVPQRGEDLITIDYKQFGVSLSFVATVLDGGRISL 322 Query: 331 RIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 ++ EVS+ I V +P+ R+A+TTVEL SG + +AGLL++ + +P Sbjct: 323 NVRPEVSQLSEAGAITVQGLTVPALTTRRAETTVELGSGQSFAIAGLLQNTSNETLRKLP 382 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L IP+LG LFR+ F + E+E+ I TP+LVKP A R L+ P D Sbjct: 383 GLGDIPVLGNLFRSKEFQKNESELVIIVTPYLVKP-ASRTLATPAD 427 >gi|209515951|ref|ZP_03264812.1| type II and III secretion system protein [Burkholderia sp. H160] gi|209503609|gb|EEA03604.1| type II and III secretion system protein [Burkholderia sp. H160] Length = 431 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 109/386 (28%), Positives = 192/386 (49%), Gaps = 25/386 (6%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +L +P V V+DP ADV V +P T+++ GK G + +G + +L +++ Sbjct: 22 MLHLPEAAVAVFVADPDVADVHVPTPETVFVLGKKAGTTTLFALGAHNRTILRETVVVSA 81 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D ++ L + + ++++ G V + ++ +L Sbjct: 82 DTPSIQRMLDARFPQFQLTLTAAPGSLMVAGRVPDAAAADAVMQSLTPYLHDK------- 134 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + ++N L + QV L+V I EV R++ +Q+G + G S F G+ Sbjct: 135 ---ETLVNRLTLTRPIQVHLRVRITEVDRNVTQQLGINWNALGQSG---NFIGGLFNGRA 188 Query: 239 ------VSEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 +S G FS+ G +++ + VL AL++ I LAEP LTA+SG++ASF +G Sbjct: 189 GSATTTLSSTGAFSILGAFQAGKWAIDGVLDALDQEGLITMLAEPNLTAMSGETASFLAG 248 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346 G+ T + ++ YGV L FTPTVL+ RI L+++ EVSE + +++ Sbjct: 249 GEFPIPVPQGQTNSITIEFKPYGVSLDFTPTVLADNRISLKVRPEVSELDTTNGVTIDSI 308 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P+ VR+ +TTVEL SG + + GLL+ + + +P L K+P+LG LF + + Sbjct: 309 KVPALTVRRVETTVELSSGQSFAIGGLLQSNTSDVLAELPGLGKLPVLGKLFSSKSYLNN 368 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDD 432 ++E+ + TP++V+P L +P D Sbjct: 369 KSEVVVIVTPYIVQPAEPGRLRQPID 394 >gi|323499921|ref|ZP_08104880.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326] gi|323315162|gb|EGA68214.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326] Length = 487 Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 125/451 (27%), Positives = 217/451 (48%), Gaps = 36/451 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 GK + + +K + + + V + DP D+V+ ++L GK +G N++ G Sbjct: 25 GKIVKVPHHKSTHVTLAAKAKRVSLGDPEVLDIVMLKSDEVFLIGKKLGSTNLMAWDSRG 84 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + +++I + D+ L+ L F+ + I V + ++L G + +A+ ++ET Sbjct: 85 RLIESINIEVTHDLNSLKAKLYEFLPNEEIEVHSAQNRLILSGQISNQAAMNKALRVAET 144 Query: 167 FLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216 + + ++ S S++V +NL+ I G QV L+VT+AEV+R ++++ F+ Sbjct: 145 YSAGQEADKENRSLSEQVQKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKFDSNFHFFE 204 Query: 217 HSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERA 266 + S G S D G F + G D + G L F F L ++ Sbjct: 205 SNGNFSWGGTSAGAIIDDVNGGIGPIFNAPGIDNT--GFLGTFIDGDTLFTFALDIAKQN 262 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + + LAEP LTA+SG A F +GG+ + ++ +YGV L F PTVLS Sbjct: 263 GSAKVLAEPNLTALSGAKAEFLAGGE--FPIPVPDDDGITIEYKEYGVGLKFIPTVLSDK 320 Query: 327 RIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 I L + +VSE + +N G +P R A +T+EL G TI +AGLL + Sbjct: 321 HINLNLAIDVSEIANSATLTLNPGGTNGTYVIPPITRRSASSTLELADGQTIGIAGLLSE 380 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 +++ + G+P S IP+LG +F + + ETE+ I TP L KP+ +S P D + Sbjct: 381 NVRDVVSGVPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRSKVSLPTDSFVE 440 Query: 437 EDDAKAFFFNRVNKIY--GPKEASEVEGQNY 465 +D + + R I G +++E + N+ Sbjct: 441 PNDFEYYLLGRGAYIAPTGKSKSNESQESNF 471 >gi|327189767|gb|EGE56911.1| cpaC pilus assembly Q protein [Rhizobium etli CNPAF512] Length = 495 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 129/428 (30%), Positives = 210/428 (49%), Gaps = 42/428 (9%) Query: 42 VEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 V +GK + +++ N+ + L D+++ DVV S +++++ GK G N+ Sbjct: 42 VTLGKSVQHVTLPPNETLTLNTGQPFGDLVIGSADMIDVVPLSDKSLFVRGKKTGATNIS 101 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + G D + +DI + D + + +R + +RV +D + L G+VR + QR Sbjct: 102 VYGDDKSLLGVIDIRVASDFSEVSAAIRSAAPTARVRVFNSNDRIRLVGVVRDSIELQRV 161 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 +E+++++ S + V+N L ++ QV L+V I E R + +G S Sbjct: 162 LEIAQSY------------SEQPVLNQLRVSDSQQVMLEVRIIEASRQTGRDLGIGWSGY 209 Query: 221 GSS-----SGPSKSFAADFGG--------KFVSEG----GDFSVKGV-LDRFSFETVLHA 262 G++ + S+ D G K + G G K + + + V++A Sbjct: 210 GNNNRIGKATTSQGITVDDGNLARTLLDPKGAATGMLPFGQLIAKVLEISGGHIDVVINA 269 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVLHFTP 320 LE+ +R LA+P L A+SG +ASF +GG+ L T + +T AT +GV L F P Sbjct: 270 LEQKGLVRRLAQPNLIAMSGSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKP 329 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD---- 376 VL G I L I+ EVSE +N P + R A TTV L G + LAGLL+ Sbjct: 330 VVLDDGVINLEIEPEVSELDPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAK 389 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYS 435 DIQQ+ P L +IP+LGALFR++ F ++E+++ I TP +V+P DL P D Sbjct: 390 DIQQM----PGLGQIPVLGALFRSTSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTR 445 Query: 436 VEDDAKAF 443 +D + F Sbjct: 446 SSNDVELF 453 >gi|312621080|ref|YP_003993808.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp pilus assembly [Photobacterium damselae subsp. damselae] gi|311872801|emb|CBX86892.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Photobacterium damselae subsp. damselae] Length = 438 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 117/388 (30%), Positives = 188/388 (48%), Gaps = 38/388 (9%) Query: 62 VPVD--VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 VPVD + V +SDP AD V + +FGK +G N+ + ++G ++ N +++ + Sbjct: 33 VPVDTEIDSVFISDPAIADYQVIDKNKVVIFGKKIGHTNLFIFDNEGNELANRKVIVNKS 92 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + ++ + D+NI + + VVL G V Q + T LS+ + N Sbjct: 93 LREIKQYISIKFPDANIDIFNFGEQVVLSGTVSNEQVKDEINNIVGTLLSKKSNDFNFNL 152 Query: 180 SSKK---------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + ++N + + QV +K++IAEV L+QIG Q++ G + Sbjct: 153 ETDDQDYEVQFMKQKHFTGLVNNIEVLATRQVNVKLSIAEVSHSFLEQIGVQYNSIGHAP 212 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G FV+ +FS +L +V+ A+ + LAEP L+ ISG+S Sbjct: 213 GV-----------FVNPLTNFSASDIL------SVITAIGNDGIGQVLAEPNLSVISGES 255 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342 ASF GG+ V+ T+VT ++GV L V +I L + EVS + Sbjct: 256 ASFLVGGE--LPVVTIVDNGTNVTYKEFGVKLELLAKVRKDDKITLSLMPEVSSLDTQYS 313 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + D+P+ + R+A TTVEL G + VL GLL + ++ +P + IP+LGALFRNSR Sbjct: 314 NDKYDLPALKTRRARTTVELGDGQSFVLGGLLSTEDKERLNKVPYIGDIPVLGALFRNSR 373 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430 R +TE+ I AT LV+P+ + P Sbjct: 374 TERNKTELIIVATVNLVQPIHPSQVQLP 401 >gi|317154605|ref|YP_004122653.1| type II and III secretion system protein [Desulfovibrio aespoeensis Aspo-2] gi|316944856|gb|ADU63907.1| type II and III secretion system protein [Desulfovibrio aespoeensis Aspo-2] Length = 478 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 140/476 (29%), Positives = 225/476 (47%), Gaps = 52/476 (10%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 FL + +V+ L P+ A+ V+N + IS+ ++K IL V V ++ P Sbjct: 13 FLMALAVTVSGLVPLAVADVDVLNTEAPGV-----ISLVVSKSTILTADAPVSRVSLAQP 67 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIA- 132 A VVV SP +Y+ G+ +G + L G Q+ + D++I D+ L+ + + Sbjct: 68 ETASVVVLSPTQIYITGRKLGTTTLTL--WSGGQVSGVYDLVITPDVTRLKRMIHEILPR 125 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 + +++V +++ L G V D + L+E + KV+NLL + G Sbjct: 126 ERSVQVLSSGESITLSGSVSNTGDLTSVLSLAEA------------EAPGKVVNLLRVDG 173 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFGGKFVS------- 240 QV L+V +AE+ R LK++G + T S S + S A+ G + Sbjct: 174 VQQVMLQVRVAEMSRTALKRMGINLAATFSNFTVYSFLNNLSSLANTGSNVIELTDKINS 233 Query: 241 ----EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G +V G+LD AL+ R LAEP LT +SG+SA F GG+ + Sbjct: 234 VVRYNSGSTNVVGMLD---------ALKAHGLARLLAEPNLTCVSGESADFLVGGE-IPI 283 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352 + G S+ +GV L FTPTVLS G I L + EVSE + ++P+ Sbjct: 284 PKPGALGTVSIEFKPFGVGLEFTPTVLSSGAINLHVSPEVSELDYTNALRYQGYEIPAIS 343 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 RKA T V+L G + +AGL+ + +++ P+L IP+LG LFR+S + + +TE+ I Sbjct: 344 TRKASTVVDLADGQSFAIAGLISESLKENNHRFPVLGDIPVLGTLFRSSDYQKNKTELVI 403 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 T LVKP+ M + P D + D + F+ + + G A+ V Q G+ Sbjct: 404 IVTAHLVKPLDMAGQTLPGDGFKEPTDYE-FYMLGLLEGQGASPAAMVGAQARSGS 458 >gi|269105132|ref|ZP_06157826.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Photobacterium damselae subsp. damselae CIP 102761] gi|268160582|gb|EEZ39081.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Photobacterium damselae subsp. damselae CIP 102761] Length = 442 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 117/388 (30%), Positives = 188/388 (48%), Gaps = 38/388 (9%) Query: 62 VPVD--VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 VPVD + V +SDP AD V + +FGK +G N+ + ++G ++ N +++ + Sbjct: 37 VPVDTEIDSVFISDPAIADYQVIDKNKVVIFGKKIGHTNLFIFDNEGNELANRKVIVNKS 96 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + ++ + D+NI + + VVL G V Q + T LS+ + N Sbjct: 97 LREIKQYISIKFPDANIDIFNFGEQVVLSGTVSNEQVKDEINNIVGTLLSKKSNDFNFNL 156 Query: 180 SSKK---------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + ++N + + QV +K++IAEV L+QIG Q++ G + Sbjct: 157 ETDDQDYEVQFMKQKHFTGLVNNIEVLATRQVNVKLSIAEVSHSFLEQIGVQYNSIGHAP 216 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G FV+ +FS +L +V+ A+ + LAEP L+ ISG+S Sbjct: 217 GV-----------FVNPLTNFSASDIL------SVITAIGNDGIGQVLAEPNLSVISGES 259 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342 ASF GG+ V+ T+VT ++GV L V +I L + EVS + Sbjct: 260 ASFLVGGE--LPVVTIVDNGTNVTYKEFGVKLELLAKVRKDDKITLSLMPEVSSLDTQYS 317 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + D+P+ + R+A TTVEL G + VL GLL + ++ +P + IP+LGALFRNSR Sbjct: 318 NDKYDLPALKTRRARTTVELGDGQSFVLGGLLSTEDKERLNKVPYIGDIPVLGALFRNSR 377 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430 R +TE+ I AT LV+P+ + P Sbjct: 378 TERNKTELIIVATVNLVQPIHPSQVQLP 405 >gi|221067360|ref|ZP_03543465.1| type II and III secretion system protein [Comamonas testosteroni KF-1] gi|220712383|gb|EED67751.1| type II and III secretion system protein [Comamonas testosteroni KF-1] Length = 520 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 120/380 (31%), Positives = 194/380 (51%), Gaps = 31/380 (8%) Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NI 136 +V + SPR ++ G+ G NVIL G + D+++ D L+ L + + +I Sbjct: 100 EVQLLSPRDLFFRGRKSGSMNVILQNAQGACFIK-DVIVTMDPGPLQAKLSELMPEERSI 158 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 RV+ + +VL G + V L+ + S SKK++NLL QV Sbjct: 159 RVQGADNALVLSGEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQV 207 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 L+V IAE+ + +L ++G S++G + + F+S GG L R S Sbjct: 208 MLEVKIAEISKTLLDKLG--SSLSGQRVTSNGQNSYTVLSNFLSGGGGLLNAMRLGRGSI 265 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYG 313 + + +R LAEP + AISGQ ASF SGG+ ++T V T ++G Sbjct: 266 S--IDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQTNTNGVPVMTLEEKEFG 323 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNA--GDMPSYRVRKADTTVELPSG 365 + + FTPTVL R+ L++ +EVS+ P +N +PS VR+ADTTV+L G Sbjct: 324 IGVKFTPTVLGNSRVNLKLVSEVSDLSQTGSPFTSINGVTSVIPSLTVRRADTTVQLNDG 383 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++V+AGL+K++I + + P L +IP+LGAL R++ F ++TE+ TP LV+ A+ Sbjct: 384 QSLVIAGLIKNNITEAIKRFPGLGEIPVLGALARSTEFQTDQTELMFVITPRLVQ--ALA 441 Query: 426 DLSR-PDDHYSVEDDAKAFF 444 + R P D++ V A+ + Sbjct: 442 EAPRVPTDNHVVPSRAEVYL 461 >gi|258621447|ref|ZP_05716481.1| Flp pilus assembly protein [Vibrio mimicus VM573] gi|262171232|ref|ZP_06038910.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus MB-451] gi|258586835|gb|EEW11550.1| Flp pilus assembly protein [Vibrio mimicus VM573] gi|261892308|gb|EEY38294.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus MB-451] Length = 488 Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 124/430 (28%), Positives = 205/430 (47%), Gaps = 30/430 (6%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 I GK +++ +K + + + V + DP D+V+ ++L G+ +G N++ Sbjct: 22 IQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTNLMAWD 81 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 G + +L++ + D+ L+ L + D I+V + ++L GMV + A+ + Sbjct: 82 SRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMNIALRV 141 Query: 164 SETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIG---- 214 +ET+ + ++ S + +V +NL+ I G QV L+VT+AEV+R ++++ Sbjct: 142 AETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNFH 201 Query: 215 -FQHSITGSSSGPSKS-FAADFGGKF--VSEGGDFSVKGVLDRF-----SFETVLHALER 265 F+ + S G S D GG V + G+L F F L + Sbjct: 202 FFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFALDIAKE 261 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + LAEP LTA+SG A F +GG+ V G T + +YGV L F PT+LS Sbjct: 262 NGVAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDKDGVT-IEYKEYGVGLKFIPTILSD 319 Query: 326 GRIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLK 375 RI L + +VSE + +N G +P R A +T+EL G TI +AGLL Sbjct: 320 KRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGIAGLLS 379 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 ++++ + +P IP+LG LFR+ + ETE+ I TP L KPV ++ P D + Sbjct: 380 ENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLPTDAFV 439 Query: 436 VEDDAKAFFF 445 D K + Sbjct: 440 EPSDFKYYLL 449 >gi|258627504|ref|ZP_05722285.1| Flp pilus assembly protein [Vibrio mimicus VM603] gi|258580310|gb|EEW05278.1| Flp pilus assembly protein [Vibrio mimicus VM603] Length = 488 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 124/430 (28%), Positives = 205/430 (47%), Gaps = 30/430 (6%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 I GK +++ +K + + + V + DP D+V+ ++L G+ +G N++ Sbjct: 22 IQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTNLMAWD 81 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 G + +L++ + D+ L+ L + D I+V + ++L GMV + A+ + Sbjct: 82 SRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMNIALRV 141 Query: 164 SETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIG---- 214 +ET+ + ++ S + +V +NL+ I G QV L+VT+AEV+R ++++ Sbjct: 142 AETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNFH 201 Query: 215 -FQHSITGSSSGPSKS-FAADFGGKF--VSEGGDFSVKGVLDRF-----SFETVLHALER 265 F+ + S G S D GG V + G+L F F L + Sbjct: 202 FFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFALDIAKE 261 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + LAEP LTA+SG A F +GG+ V G T + +YGV L F PT+LS Sbjct: 262 NGVAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDKDGVT-IEYKEYGVGLKFIPTILSD 319 Query: 326 GRIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLK 375 RI L + +VSE + +N G +P R A +T+EL G TI +AGLL Sbjct: 320 KRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGIAGLLS 379 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 ++++ + +P IP+LG LFR+ + ETE+ I TP L KPV ++ P D + Sbjct: 380 ENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLPTDAFV 439 Query: 436 VEDDAKAFFF 445 D K + Sbjct: 440 EPSDFKYYLL 449 >gi|262165919|ref|ZP_06033656.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus VM223] gi|262025635|gb|EEY44303.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus VM223] Length = 488 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 124/430 (28%), Positives = 205/430 (47%), Gaps = 30/430 (6%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 I GK +++ +K + + + V + DP D+V+ ++L G+ +G N++ Sbjct: 22 IQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTNLMAWD 81 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 G + +L++ + D+ L+ L + D I+V + ++L GMV + A+ + Sbjct: 82 SRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMNIALRV 141 Query: 164 SETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIG---- 214 +ET+ + ++ S + +V +NL+ I G QV L+VT+AEV+R ++++ Sbjct: 142 AETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNFH 201 Query: 215 -FQHSITGSSSGPSKS-FAADFGGKF--VSEGGDFSVKGVLDRF-----SFETVLHALER 265 F+ + S G S D GG V + G+L F F L + Sbjct: 202 FFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFALDIAKE 261 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + LAEP LTA+SG A F +GG+ V G T + +YGV L F PT+LS Sbjct: 262 NGVAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDKDGVT-IEYKEYGVGLKFIPTILSD 319 Query: 326 GRIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLK 375 RI L + +VSE + +N G +P R A +T+EL G TI +AGLL Sbjct: 320 KRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGIAGLLS 379 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 ++++ + +P IP+LG LFR+ + ETE+ I TP L KPV ++ P D + Sbjct: 380 ENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLPTDAFV 439 Query: 436 VEDDAKAFFF 445 D K + Sbjct: 440 EPSDFKYYLL 449 >gi|323491532|ref|ZP_08096711.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546] gi|323314108|gb|EGA67193.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546] Length = 485 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 122/440 (27%), Positives = 213/440 (48%), Gaps = 27/440 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 GK + + +K + + + V + DP D+V+ ++L GK +G N++ G Sbjct: 25 GKVVKVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDELFLIGKKLGSTNLMAWDSRG 84 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + +++I + D+ L+ L F+ + +I V + ++L G + A+ ++ET Sbjct: 85 QLIESINIEVTHDLNSLKAKLFEFLPNESIEVHSAQNRLILSGQISNQAAMNIALRVAET 144 Query: 167 FLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216 + + ++ S SK+ V+NL+ I G QV L+VT+AEV+R ++++ FQ Sbjct: 145 YSAGRQADKENKSLSKQAEKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKFDANFAFFQ 204 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRT 271 S + G + + A G + E G+L F F L + + Sbjct: 205 SSGSKFKWGGTSTGATVPGATPIFEAPSTGDYGILGSFIDGNTLFTFALDVARQNGTAKV 264 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP LTA+SG A F +GG+ V G T + +YGV L F PTVLS +I L Sbjct: 265 LAEPNLTALSGSKAEFLAGGEFPIP-VPDEDGIT-IEYKEYGVGLKFIPTVLSDKKINLN 322 Query: 332 IQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + +VSE + ++ G +P R A +T+EL G TI +AGLL ++++ + Sbjct: 323 LAVDVSEIANSSSLTLSPGSTNSTYIIPPITRRSASSTLELADGQTIGIAGLLSENVRDV 382 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P S IPILG +F + + ETE+ I TP L +P+ ++ P D + +D + Sbjct: 383 ANEMPGFSDIPILGQMFNSQEYVSGETELVILVTPRLAQPIDRNKVTLPTDSFVEPNDFE 442 Query: 442 AFFFNRVNKIYGPKEASEVE 461 + R + + +AS+ + Sbjct: 443 YYLLGRGSYLAPASQASQAK 462 >gi|59713403|ref|YP_206178.1| general secretion pathway protein D [Vibrio fischeri ES114] gi|59481651|gb|AAW87290.1| general secretion pathway protein D [Vibrio fischeri ES114] Length = 440 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 117/383 (30%), Positives = 188/383 (49%), Gaps = 38/383 (9%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 DV V VSDP AD V + + ++GK +GQ++V++ +G + N +++ + + ++ Sbjct: 42 DVGSVFVSDPKIADYQVIEKKKVIVYGKKIGQSSVMVFDRNGHTLANKKLIVNKSLDSIK 101 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL--------SETF-LSQSGRNQ 175 + D ++ V + + VVL G V T Q+ + E F Q +Q Sbjct: 102 QYISVKYPDVDVDVFNIGEQVVLSGTVSTEQEKDEINNIVGQLLDKDDEKFTFEQDMEDQ 161 Query: 176 ------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 + K ++N + +A QV +K++IAEV + L+ IG Q Sbjct: 162 DYEIQFMERTDYKGIVNNIEVATTKQVNVKISIAEVSQSFLQDIGIQ------------- 208 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + D G F+ FS ++ +V+ A+ T + LAEP L+ +SG+SASF Sbjct: 209 YGTDAAGVFIQPLTHFSSSDIM------SVITAIGSDTVGQILAEPNLSVVSGESASFLV 262 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGD 347 GG+ V++ +T+V +YGV L V +I L + EVS I ++ D Sbjct: 263 GGE--LPVVTTVNNSTNVMYKEYGVRLELMAKVKKDDKITLSLVPEVSSLDIQYENDSYD 320 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P+ + R+A TTVEL G + VL GLL + ++ + IP + IPILGALFR S R + Sbjct: 321 LPALKTRRARTTVELGDGQSFVLGGLLSSEDKESLQKIPFIGDIPILGALFRGSSTKRNK 380 Query: 408 TEIFIAATPFLVKPVAMRDLSRP 430 TE+ I AT LVKP+ + P Sbjct: 381 TELLIVATVNLVKPIHSSQIQLP 403 >gi|264678238|ref|YP_003278145.1| type II and III secretion system protein [Comamonas testosteroni CNB-2] gi|262208751|gb|ACY32849.1| type II and III secretion system protein [Comamonas testosteroni CNB-2] Length = 523 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 120/380 (31%), Positives = 194/380 (51%), Gaps = 31/380 (8%) Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NI 136 +V + SPR ++ G+ G NVIL G + D+++ D L+ L + + +I Sbjct: 101 EVQLLSPRDLFFRGRKSGSMNVILQNAQGACFIK-DVIVTMDPGPLQAKLSELMPEERSI 159 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 RV+ + +VL G + V L+ + S SKK++NLL QV Sbjct: 160 RVQGADNALVLSGEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQV 208 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 L+V IAEV + +L ++G + +S +F+ F+S GG + + S Sbjct: 209 MLEVKIAEVSKTLLDKLGASLAGQRITSNGMNTFS--IASNFLSGGGGLLSAMRIGKGSI 266 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYG 313 + + +R LAEP + AISGQ ASF SGG+ S+T V T ++G Sbjct: 267 S--IDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQSNTTGVPVMTLEEKEFG 324 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNA--GDMPSYRVRKADTTVELPSG 365 + + FTPTVL R+ L++ +EVS+ P +N +PS VR+ADTTV+L G Sbjct: 325 IGVKFTPTVLGGSRVNLKLVSEVSDLSQTGSPFTAINGVTSVIPSLSVRRADTTVQLNDG 384 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++V+AGL+K++I + + P L +IP+LGAL R++ F ++TE+ TP LV+ A+ Sbjct: 385 QSLVIAGLIKNNITEAVKRFPGLGEIPVLGALARSTEFQTDQTELMFIITPRLVQ--ALA 442 Query: 426 DLSR-PDDHYSVEDDAKAFF 444 + R P D++ V A+ + Sbjct: 443 EAPRVPTDNHVVPSRAEVYL 462 >gi|197337022|ref|YP_002157812.1| general secretion pathway protein D [Vibrio fischeri MJ11] gi|197314274|gb|ACH63723.1| general secretion pathway protein D [Vibrio fischeri MJ11] Length = 440 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 117/383 (30%), Positives = 188/383 (49%), Gaps = 38/383 (9%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 DV V VSDP AD V + + ++GK +GQ++V++ +G + N +++ + + ++ Sbjct: 42 DVGSVFVSDPKIADYQVIEKKKVIVYGKKIGQSSVMVFDRNGHTLANKKVIVNKSLDSIK 101 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL--------SETF-LSQSGRNQ 175 + D ++ V + + VVL G V T Q+ + E F Q +Q Sbjct: 102 QYISVKYPDVDVDVFNIGEQVVLSGTVSTEQEKDEINNIVGQLLDKDDEKFTFEQDMEDQ 161 Query: 176 ------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 + K ++N + +A QV +K++IAEV + L+ IG Q Sbjct: 162 DYEIQFMERTDYKGIVNNIEVATTKQVNVKISIAEVSQSFLQDIGIQ------------- 208 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + D G F+ FS ++ +V+ A+ T + LAEP L+ +SG+SASF Sbjct: 209 YGTDAAGVFIQPLTHFSSSDIM------SVITAIGSDTVGQILAEPNLSVVSGESASFLV 262 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGD 347 GG+ V++ +T+V +YGV L V +I L + EVS I ++ D Sbjct: 263 GGE--LPVVTTVNNSTNVMYKEYGVRLELMAKVKKDDKITLSLVPEVSSLDIQYENDSYD 320 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P+ + R+A TTVEL G + VL GLL + ++ + IP + IPILGALFR S R + Sbjct: 321 LPALKTRRARTTVELGDGQSFVLGGLLSSEDKESLQKIPFIGDIPILGALFRGSSTKRNK 380 Query: 408 TEIFIAATPFLVKPVAMRDLSRP 430 TE+ I AT LVKP+ + P Sbjct: 381 TELLIVATVNLVKPIHSSQIQLP 403 >gi|323529413|ref|YP_004231565.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] gi|323386415|gb|ADX58505.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] Length = 616 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 122/422 (28%), Positives = 213/422 (50%), Gaps = 35/422 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + + K ++Q V++ + +P A + SP+T+Y+ G VG N+I+ G G Sbjct: 91 VVVPVGKSTLMQTAEPVRNRTLGNPLVAQATMVSPQTLYVVGMAVGTTNMIVQGKSGACE 150 Query: 110 LNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +++++ D L+ +L + + D NIRV V+ +VL G V + Q + +A E+++ + Sbjct: 151 V-INVVVNADSGGLQTSLSQLMPDEPNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYA 209 Query: 169 SQS--------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + N A + + V+N++++ QV L+V +AEV + +L Q+G +I Sbjct: 210 RSTLPAANGGTNGNGGAPAKAATVLNMMSVDSPQQVMLEVKVAEVSKTVLNQLGSAMNIQ 269 Query: 221 GSSSGPSKSFAADFGGKFVSE--GGDFSVKGV--LDRFSFETVLHALERATAIRTLAEPT 276 G F + + G +S G S+ V + F + ++ LAEP Sbjct: 270 GG-------FGS-WSGALISSLLSGVQSIAAVSKANNRPFNVAVDGQHGDDLVKILAEPN 321 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 L +SGQ A+F +GG+ S+ S + ++GV L FTPTVL+ GRI L++ Sbjct: 322 LVTLSGQEATFLAGGKVFIPIPQSNLNGVSTIILQEEEFGVGLKFTPTVLAGGRINLKVA 381 Query: 334 TEVSE-PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 EVSE GV G +P R+A TTV++ G T + GL+K + + Sbjct: 382 PEVSELSSTGVTVGATNTNNLTVLPLITTRRASTTVQMNDGETFAIGGLIKSNAAGTLKA 441 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAF 443 IP + ++P+LGALFR++ + ++ TE+ TP LVKP+ A+ +L P D ++A + Sbjct: 442 IPGVGEVPVLGALFRSTSYQQDRTELIFIITPHLVKPLQAVANLPLPTDRLKTPNEADVY 501 Query: 444 FF 445 Sbjct: 502 LL 503 >gi|86159249|ref|YP_466034.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775760|gb|ABC82597.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 487 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 131/449 (29%), Positives = 217/449 (48%), Gaps = 69/449 (15%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 D E+G + +S+ + +L V + + V++P AD+ V +P + L K +G ++ Sbjct: 30 DREVGAARSMSLEAGQNRLLVVSDQIGRIAVANPDVADLKVVTPYQVLLTAKGIGSTDLT 89 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L D ++ + + + R++ L L+ A I V D VV+ G V ++ +R Sbjct: 90 LWDRDNHPLV-IALQVTRNLEGLRKQLKELFAGEKIEVSSAGDLVVISGQVSDVRIPERV 148 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQH 217 E+ A + KV NL+ ++G+ QV L+V AEV R L+++G F Sbjct: 149 AEV-------------ARLHATKVANLVQVSGQQQVQLEVRFAEVGRTGLREMGVNFFHK 195 Query: 218 SITGSSSGP---SKSFAADF------------GGK----------------------FVS 240 S G G ++++ DF G + F+S Sbjct: 196 SDDGKRVGGMTGNRTYPGDFLNTQSNPAIPGTGPRGLWGPGMPPDVPNPAFNNAFSFFLS 255 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 +GG +F F +L+ LE++ +TLAEPTL A+SGQ A+F +GG+ L ++S Sbjct: 256 QGG---------QFPFSVMLNLLEQSNLAKTLAEPTLVAMSGQEAAFLAGGE-LPIPLAS 305 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356 + G T+V +G+ L FTPTV+ I LR++ EVS+ + V +P R++ Sbjct: 306 TFGQTAVEWKKFGIQLRFTPTVIGDA-IHLRLKAEVSDLDPTTAVTVGGTTIPGLVSRQS 364 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +TT+ L G + +AGL+ D ++ +P+L IPILGALFR+ + R+ETE+ + T Sbjct: 365 ETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAYQRDETELLVVVTA 424 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 L KPVA +L + D + A F Sbjct: 425 RLAKPVAPHELPPLPTDFENNDPSDAALF 453 >gi|156975620|ref|YP_001446527.1| Flp pilus assembly protein secretin [Vibrio harveyi ATCC BAA-1116] gi|156527214|gb|ABU72300.1| hypothetical protein VIBHAR_03353 [Vibrio harveyi ATCC BAA-1116] Length = 449 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 116/398 (29%), Positives = 194/398 (48%), Gaps = 49/398 (12%) Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 ++V + V VSDP D V + T+ +F K VGQA I+ G K +L+ I+++ D Sbjct: 36 IEVKEPISTVFVSDPEIVDYNVVNENTVVVFAKEVGQARFIIYGKSKKVLLSDRIIVDID 95 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA-- 177 ++ + ++ + NI+VE V + V + G+V + Q + T L + ++ Sbjct: 96 LSLVRRQIKLHYPELNIKVESVGNQVAVSGVVESEQQRDDIYRMVATLLGRDKTEKWEET 155 Query: 178 ----------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 N + + ++ L+ +A + QV +K+++A+V + +G Sbjct: 156 QVLEFENEAYDIEEPQSMIFARNMTWEGILELIEVATDQQVNVKISVAQVTETFSQTVGV 215 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 S G AD G + D T++ AL + LAEP Sbjct: 216 DWSSVG----------ADVGEFLFQQ---------FDAADLTTLITALGNENVAQVLAEP 256 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 LT ISG+SASF GG+ + ++ ++T ++G+ L T VL G+I +R+ E Sbjct: 257 NLTVISGESASFLVGGE--VPVIVTTNNNINITFREFGIKLDLTAKVLHEGKIRMRLMPE 314 Query: 336 VSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIP 392 VSE + + ++P + R+A TT+EL G + VL GL+ D+++LK+ IPLL IP Sbjct: 315 VSEVERYIRSAGLEVPQFATRRAMTTIELGDGDSFVLGGLMSSADLEELKK-IPLLGDIP 373 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 +LGA FR + +R TE+ I AT LVKP+ +D+ P Sbjct: 374 VLGAAFRKASTDRRRTELIIVATVNLVKPMKKKDIQMP 411 >gi|260462607|ref|ZP_05810813.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259031513|gb|EEW32783.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 478 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 208/418 (49%), Gaps = 30/418 (7%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++ + +++ + +QV ++ D++V D AD + RT+Y+ GK G V L D + Sbjct: 42 RVFLPMSQSVTIQVNANLGDIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSTDKRS 101 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + + I + D++ + +R+ S I + ++ V L G V+ + +++++ Sbjct: 102 LGVIQIEVGVDVSDMAQAIRQVSPRSRIEIGSINGKVRLGGHVKDGATLEAIMQVAQ--- 158 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---- 224 QY + ++N + + QV L+V + E +R+ + +G GSS+ Sbjct: 159 ------QYGPDA---IINSVTVDDSQQVNLEVRVLEAKRNAGRDLGVSFRSRGSSATIFG 209 Query: 225 ---GPSKSFAADFGG---KFVSEGGDFS--VKGVLD-RFSFETVLHALERATAIRTLAEP 275 + AD G +S+ F+ + ++D + ++ ALE +RTLA P Sbjct: 210 TGIAATTPPGADPGTLVTGLLSKTNPFASLITQIIDSNIKVDLIIEALEAKGVVRTLANP 269 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 LT +SG+ ASF +GGQ ++V+ G + +GV L FTP VL+ +I + + E Sbjct: 270 NLTTLSGEPASFNAGGQVPIRSVTKD-GLIQIEYKQFGVNLQFTPIVLADDKIHISLAPE 328 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 VS+ +AGD P + RK DT VEL G + + GLL +L+ +P L ++P++G Sbjct: 329 VSDLTGFTSAGD-PIFTNRKLDTVVELRDGQSFAVGGLLSSKTTKLQNQVPWLGQVPVIG 387 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNR--VNK 450 LFRNS +EETE+ + TP +V+PV L+ P D +D + F + VNK Sbjct: 388 TLFRNSSNQKEETELVVIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQLEVNK 445 >gi|227819321|ref|YP_002823292.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234] gi|227338320|gb|ACP22539.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234] Length = 496 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 129/429 (30%), Positives = 215/429 (50%), Gaps = 51/429 (11%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G +++++ N I ++ D+++ DVV S +++++ GK G N I + Sbjct: 47 GSVQQVTLAPNDTITVRTGKPFGDLVIGSAEMIDVVPLSDQSLFIRGKQTGATN-ISVYD 105 Query: 105 DGKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 D K ++ +D+ + D + + +R + +RV +D + L G VR + QR +E+ Sbjct: 106 DNKALVGVIDVRVAADFSEVASAIRSTAPSAQVRVFNSNDRIRLTGTVRDAVELQRVMEI 165 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 ++++ S++ V+N L +A QV L+V + E R + +G S G + Sbjct: 166 AQSY------------SAEPVLNQLRVAESQQVMLEVRVIEASRQTGRDLGIGWSGQGRN 213 Query: 224 ----SGPSKSFAADFGGKFVSEGGDFS------------VKGVLD--RFSFETVLHALER 265 + S+ D G GD + + VL+ + V++ALE+ Sbjct: 214 GIGKATTSQGITVDDDGNLARTLGDAAGAATGMQPFGQLIAKVLEISGGQIDIVINALEQ 273 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSVTTHDY---GVVLHFTPT 321 +R LA+P L A+SG++ASF +GG+ + TV++ GAT T DY GV L F+P Sbjct: 274 KGLVRRLAQPNLIAMSGETASFHAGGEVPIQSTVAN--GATLATETDYRPFGVRLTFSPV 331 Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD--- 376 VL G I L+I+ EVSE P I VN P + R A TTV L G + +AGLL+ Sbjct: 332 VLDGGLISLKIEPEVSEIDPSISVNGN--PGFISRAASTTVALRDGQSFAMAGLLQSVNA 389 Query: 377 -DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY 434 D+QQL P L ++P++GALFR++ F + E+++ I TP +V+P DL P + Sbjct: 390 KDVQQL----PWLGQVPVIGALFRSTSFLKRESDLVIVVTPHIVRPSKPGEDLYSPLEQT 445 Query: 435 SVEDDAKAF 443 +D + F Sbjct: 446 RSSNDVELF 454 >gi|84386797|ref|ZP_00989822.1| type II and III secretion system protein [Vibrio splendidus 12B01] gi|84378325|gb|EAP95183.1| type II and III secretion system protein [Vibrio splendidus 12B01] Length = 465 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 125/453 (27%), Positives = 220/453 (48%), Gaps = 47/453 (10%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + +N+ ++++P + + +S+ A+ + + +FGK G A + ++ + + Sbjct: 29 VTINEARMIRLPEKAKSIFISNTHIANYQTLTNTKVMIFGKQAGSATITVLNEQERVIYT 88 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ- 170 I + + ++ ++++ E + + L G V + + V L++ +LS Sbjct: 89 NKIRVTHNSREFNELVKNKFPEASVNAESLGGKLWLKGRVPSPMMAHNIVSLAKGYLSPI 148 Query: 171 --SGRNQYANS--------------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 S Q +++ + +++N L + +QV ++V IAEV R+ Sbjct: 149 VGSTEQQESSNSQGNSNNSSSSTNQNQQTQLNDDELINQLVVTMPNQVNIRVKIAEVSRN 208 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 + ++G + GS +G F+ VS G S+ ++D AL Sbjct: 209 VSNKLGIKW---GSIAGGVGQFSFSKLPN-VSSWGKPSITALID---------ALATNGM 255 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + LAEP LTA+SG+ A F GGQ +++ T T + D+GV L+FTPTVLS RI Sbjct: 256 MSVLAEPNLTAMSGEDAEFLVGGQVPLPLITADT--TQIEYKDFGVKLNFTPTVLSQNRI 313 Query: 329 GLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKE 383 L++ EVS I +N + PS+ R A TT+EL SG + L GLLK +DI+QL++ Sbjct: 314 SLKVNPEVSNISIESQQVINGTNFPSFTTRSASTTIELASGQSFALGGLLKSEDIEQLQK 373 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY-SVEDDAKA 442 +PL+ +IP+LG+LFR++ F R ETE+ I T +LV+P + P D + D + Sbjct: 374 -VPLIGEIPVLGSLFRSTEFTRRETELIIIVTAYLVQPTRSDSMPLPTDGLIPLSDVERL 432 Query: 443 FFFNRVNKIYGPKEASEVEGQNYK--GAIGFIY 473 + R + +A+ + Q + G GF Y Sbjct: 433 LAWPREQQKTSNNKATYTDNQKPRLLGDNGFYY 465 >gi|197123317|ref|YP_002135268.1| type II and III secretion system protein [Anaeromyxobacter sp. K] gi|196173166|gb|ACG74139.1| type II and III secretion system protein [Anaeromyxobacter sp. K] Length = 484 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 131/449 (29%), Positives = 217/449 (48%), Gaps = 69/449 (15%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 D E+G + +S+ + +L V + + V++P AD+ V +P + L K +G ++ Sbjct: 30 DREVGAARSMSLEAGQNRLLVVSDQIGRIAVANPDVADLKVVTPYQVLLTAKGIGSTDLT 89 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L D ++ + + + R++ L L+ A I V D VV+ G V ++ +R Sbjct: 90 LWDRDNHPLV-VALQVTRNLEGLRKQLKELFAGEKIDVSSAGDLVVISGQVSDVRIPERV 148 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG---FQH 217 E++ S KV NL+ ++G+ QV L+V AEV R L+++G F Sbjct: 149 AEVARLHAS-------------KVANLVQVSGQQQVQLEVRFAEVGRTGLREMGVNFFHK 195 Query: 218 SITGSSSGP---SKSFAADF------------GGK----------------------FVS 240 S G G ++++ DF G + F+S Sbjct: 196 SDDGKRVGGMTGNRTYPGDFLNTQSNPAIPGTGPRGLWGPGLPPDVPNAAFNNAFSFFLS 255 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 +GG +F F +L+ LE++ +TLAEPTL A+SGQ A+F +GG+ L ++S Sbjct: 256 QGG---------QFPFSVMLNLLEQSNLAKTLAEPTLVAMSGQEAAFLAGGE-LPIPLAS 305 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356 + G T+V +G+ L FTPTV+ I LR++ EVS+ + V +P R++ Sbjct: 306 TFGQTAVEWKKFGIQLRFTPTVIGDA-IHLRLKAEVSDLDPTTAVTVGGTTIPGLVSRQS 364 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +TT+ L G + +AGL+ D ++ +P+L IPILGALFR+ + R+ETE+ + T Sbjct: 365 ETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAYQRDETELLVVVTA 424 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 L KPVA +L + D + A F Sbjct: 425 RLAKPVAPHELPPLPTDFENNDPSDAALF 453 >gi|312883308|ref|ZP_07743034.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368924|gb|EFP96450.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 440 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 132/443 (29%), Positives = 216/443 (48%), Gaps = 61/443 (13%) Query: 8 FFTMMS-IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T++S IF+F SN S A++ I + +A IN+ + + Sbjct: 11 ILTLLSLIFIFISNCSAAEILNIDQDSAKTINLKN-----------------------SI 47 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 V + +PT AD + + +FG VG +VI+ G G ++ N ++++ + + L+ T Sbjct: 48 STVFLVNPTIADYKIIDDNKLVIFGVGVGSTSVIVYGKGGSEIYNTELIVNKSLRLLKQT 107 Query: 127 -LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE--LSETFLSQSGRNQYANSSS-- 181 L RF ++ I V + D VVL G+V + + ++AV + E Q +Y+++S Sbjct: 108 ILARFPGET-ISVSNIGDQVVLDGVVSS-ERVKKAVSRLVGEMLKKQRNVQKYSDASGGN 165 Query: 182 -------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 +++N + + +Q+ +K+T+AEV L +IG +S G +G Sbjct: 166 TQLEYNYHEIINNMKVLSTEQINVKITVAEVASSFLNEIGVSYSEMGGEAG--------- 216 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 KFV++ FS K ++ V+ A+ + LAEP L+ ISG+ ASF GG+ + Sbjct: 217 --KFVNKITHFSAKDIV------AVISAVGNESVGHVLAEPNLSVISGEKASFLVGGE-I 267 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPS 350 V G S++ +YGV L V I L + EVS V V PS Sbjct: 268 PIGVRDDKGV-SISYKEYGVKLSMIAKVADSENIRLSLFPEVSTIDENHVTKVGQLTAPS 326 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R+A+TTV+L G + VLAGLL+ + ++ +P L IPI+GALF +S+ +R +TE+ Sbjct: 327 LQTRRAETTVQLKDGQSFVLAGLLRSEERESLSKVPYLGDIPIIGALFSHSKTDRSKTEL 386 Query: 411 FIAATPFLVKPVAMRDLSRPDDH 433 I AT LV PV + P H Sbjct: 387 IIVATVNLVTPVDPDKVKLPGFH 409 >gi|320155489|ref|YP_004187868.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] gi|319930801|gb|ADV85665.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] Length = 488 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 126/429 (29%), Positives = 208/429 (48%), Gaps = 34/429 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 GK +++ +K + + + V + DP D+V+ ++L G+ +G N++ G Sbjct: 25 GKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTNLMAWDSRG 84 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +++I + D+ L+ L F+ + I+V + ++L GMV T + A+ ++ET Sbjct: 85 NLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMNIALRVAET 144 Query: 167 FLSQSGRNQYA---NSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216 + + ++ NS +K V+NL+ I G QV L+VT+AEV+R ++++ F+ Sbjct: 145 YAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNFHFFE 204 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-----LDRF-----SFETVLHALERA 266 ++ GS S + S G F+V G+ L F F L + Sbjct: 205 NN--GSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFALDIAKEN 262 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP LTA+SG A F +GG+ V S G T + +YGV L F PT+LS Sbjct: 263 GVAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDSDGVT-IEYKEYGVGLKFVPTILSDK 320 Query: 327 RIGLRIQTEVSEPVI---------GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 RI L + +VSE G NA +P R A +T+EL G TI +AGLL + Sbjct: 321 RINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGIAGLLSE 380 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 +++ + +P IP+LG LF + + ETE+ I TP L KP+ ++ P D + Sbjct: 381 NVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLPTDAFVE 440 Query: 437 EDDAKAFFF 445 D K + Sbjct: 441 PSDLKYYLL 449 >gi|27365106|ref|NP_760634.1| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus CMCP6] gi|27361252|gb|AAO10161.1| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus CMCP6] Length = 488 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 126/429 (29%), Positives = 208/429 (48%), Gaps = 34/429 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 GK +++ +K + + + V + DP D+V+ ++L G+ +G N++ G Sbjct: 25 GKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTNLMAWDSRG 84 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +++I + D+ L+ L F+ + I+V + ++L GMV T + A+ ++ET Sbjct: 85 NLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMNIALRVAET 144 Query: 167 FLSQSGRNQYA---NSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216 + + ++ NS +K V+NL+ I G QV L+VT+AEV+R ++++ F+ Sbjct: 145 YAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNFHFFE 204 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-----LDRF-----SFETVLHALERA 266 ++ GS S + S G F+V G+ L F F L + Sbjct: 205 NN--GSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFALDIAKEN 262 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP LTA+SG A F +GG+ V S G T + +YGV L F PT+LS Sbjct: 263 GVAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDSDGVT-IEYKEYGVGLKFVPTILSDK 320 Query: 327 RIGLRIQTEVSEPVI---------GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 RI L + +VSE G NA +P R A +T+EL G TI +AGLL + Sbjct: 321 RINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGIAGLLSE 380 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 +++ + +P IP+LG LF + + ETE+ I TP L KP+ ++ P D + Sbjct: 381 NVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLPTDAFVE 440 Query: 437 EDDAKAFFF 445 D K + Sbjct: 441 PSDLKYYLL 449 >gi|297581608|ref|ZP_06943530.1| flp pilus assembly protein [Vibrio cholerae RC385] gi|297534015|gb|EFH72854.1| flp pilus assembly protein [Vibrio cholerae RC385] Length = 469 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 120/434 (27%), Positives = 207/434 (47%), Gaps = 42/434 (9%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSP--RTMYLFGKNVGQANVILIGHDGKQMLN 111 +N+ I+ V D+QDV VSDP VVVH+P R + + GK++G +++++G + + + + Sbjct: 29 VNQNQIITVDGDIQDVFVSDPKI--VVVHAPSSRHVMVSGKDIGSTDLLIMGENAQTLAH 86 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--- 168 + + D++ LE ++ ++NIR +V+ G V + + ++ F Sbjct: 87 YKLNVNADLSELERAVQHAFPEANIRFAYSKGAIVVMGEVANPLQAHEVLSMASGFARGL 146 Query: 169 ---SQSGRNQYANSSS-----------------KKVMNLLNIAGEDQVTLKVTIAEVRRD 208 Q + ANS+S K V+N L G QV + + I E+ R Sbjct: 147 QKPEQQTLDMPANSASSGRDSGAAKPGGGIGDYKFVVNQLKTQGSAQVNISIRIVEMERA 206 Query: 209 ILKQIGFQHSITGSSSGPS-----KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 +Q+G + S G+ + + A G KF + ++ + ++ AL Sbjct: 207 TSEQLGLRWSSIGNMRWGTWDTLQTALGATPGNKFPTN----TLPSGNGQHGLNVIIDAL 262 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + + LAEP LTA SG++A+F SGG+ + V + S+ +G+ L TPTVL Sbjct: 263 VENSLVNVLAEPNLTAKSGEAATFMSGGEFPFP-VDNGDDGVSIEFKKFGIALEVTPTVL 321 Query: 324 SPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 S +I L + EVS E + + ++P R+A TT+EL G + LAGL++ Sbjct: 322 SNRQISLTVAPEVSTLSRENSVSIAGVEVPGIETRRATTTIELADGQSFALAGLVRTYQD 381 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVED 438 E +P L +IPIL F + F E+E+ I AT LV+P + +L+ P D Y Sbjct: 382 HKVEALPFLGEIPILAPFFSTNSFKNSESELVIIATARLVEPSSDPAELTTPLDRYRPAS 441 Query: 439 DAKAFFFNRVNKIY 452 + F +++ + + Sbjct: 442 RFERLFLHKMGETH 455 >gi|37680844|ref|NP_935453.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016] gi|37199593|dbj|BAC95424.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016] Length = 488 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 126/429 (29%), Positives = 208/429 (48%), Gaps = 34/429 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 GK +++ +K + + + V + DP D+V+ ++L G+ +G N++ G Sbjct: 25 GKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTNLMAWDSRG 84 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +++I + D+ L+ L F+ + I+V + ++L GMV T + A+ ++ET Sbjct: 85 NLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMNIALRVAET 144 Query: 167 FLSQSGRNQYA---NSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216 + + ++ NS +K V+NL+ I G QV L+VT+AEV+R ++++ F+ Sbjct: 145 YAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNFHFFE 204 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-----LDRF-----SFETVLHALERA 266 ++ GS S + S G F+V G+ L F F L + Sbjct: 205 NN--GSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFALDIAKEN 262 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP LTA+SG A F +GG+ V S G T + +YGV L F PT+LS Sbjct: 263 GVAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDSDGVT-IEYKEYGVGLKFVPTILSDK 320 Query: 327 RIGLRIQTEVSEPVI---------GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 RI L + +VSE G NA +P R A +T+EL G TI +AGLL + Sbjct: 321 RINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGIAGLLSE 380 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 +++ + +P IP+LG LF + + ETE+ I TP L KP+ ++ P D + Sbjct: 381 NVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLPTDAFVE 440 Query: 437 EDDAKAFFF 445 D K + Sbjct: 441 PSDLKYYLL 449 >gi|295700370|ref|YP_003608263.1| type II and III secretion system protein [Burkholderia sp. CCGE1002] gi|295439583|gb|ADG18752.1| type II and III secretion system protein [Burkholderia sp. CCGE1002] Length = 634 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 121/432 (28%), Positives = 216/432 (50%), Gaps = 36/432 (8%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 EI +S+ + K I++ + ++ + +P A + S RT+Y+ G +VG N+I+ Sbjct: 97 EIRDESNVSVAVGKSILVPLVEPARNRTLGNPVVAQATLVSQRTLYVVGMSVGTTNMIVQ 156 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ TL + + + IRV + +VL G V + Q +Q+A+ Sbjct: 157 GRSGACQI-IDVSVGVDAEGLQRTLAQLLPNERGIRVSSAAGNLVLAGRVSSGQAAQQAM 215 Query: 162 ELSETFLSQSGRNQYANSSSK------------------KVMNLLNIAGEDQVTLKVTIA 203 ++ + Q +S++ +V+N++ + QV L+V +A Sbjct: 216 SIAGAYAGAQPTQQDQSSTASFGNGGSISQQSSSVSKGSEVINMMTVDSPQQVMLEVKVA 275 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 EV + +L Q+G +I G + + + VS G +V +R F + A Sbjct: 276 EVSKTLLNQLGAAVNIQGGFGSWTGALVSSLLAG-VSSG--VAVSKANNR-PFNIAVDAQ 331 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-SSSTGATSVTTHD--YGVVLHFTP 320 + + + LAEP L +SGQ ASF +GG+ S+ TG +++T + +GV L FTP Sbjct: 332 KSDSLGKILAEPNLVTLSGQEASFLAGGRVFIPVPQSNGTGGSTITLQEEEFGVGLKFTP 391 Query: 321 TVLSPGRIGLRIQTEVSE--PV-IGVNAGD------MPSYRVRKADTTVELPSGGTIVLA 371 TVL+ R+ L++ EVSE P + V A +P R+A TTV++ G + + Sbjct: 392 TVLAGSRVNLKVAPEVSELSPTGVTVQATGTSSTAILPLITTRRASTTVQMNDGESFAIG 451 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL++++I + +P + ++P+LGALFR++ F ++ TE+ T LVKP+ D P Sbjct: 452 GLIQNNITGALKALPGIGEVPVLGALFRSTSFQQDRTELIFIVTVHLVKPLPPGDYPLPT 511 Query: 432 DHYSVEDDAKAF 443 D ++ D + Sbjct: 512 DSFTGVSDGTVY 523 >gi|299532592|ref|ZP_07045981.1| type II and III secretion system protein [Comamonas testosteroni S44] gi|298719395|gb|EFI60363.1| type II and III secretion system protein [Comamonas testosteroni S44] Length = 520 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 119/380 (31%), Positives = 192/380 (50%), Gaps = 31/380 (8%) Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NI 136 +V + SPR ++ G+ G NVIL G + D+++ D L+ L + + I Sbjct: 98 EVQLLSPRDLFFRGRKSGSMNVILQNAQGACFIK-DVIVTMDPGPLQTKLSELMPEERGI 156 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 RV+ + +VL G + V L+ + S SKK++NLL QV Sbjct: 157 RVQGADNALVLSGEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQV 205 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 L+V IAEV + +L ++G + +S +F+ F+S GG + + S Sbjct: 206 MLEVKIAEVSKTLLDKLGASLAGQRITSNGMNTFS--IASNFLSGGGGLLSAMRIGKGSI 263 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYG 313 + + +R LAEP + AISGQ ASF SGG+ S+T V T ++G Sbjct: 264 S--IDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVSQSNTNGVPVMTLEEKEFG 321 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNA--GDMPSYRVRKADTTVELPSG 365 + + FTPTVL R+ L++ +EVS+ P +N +PS VR+ADTTV+L G Sbjct: 322 IGVKFTPTVLGSSRVNLKLVSEVSDLSQTGSPFTAINGVTSVIPSLSVRRADTTVQLNDG 381 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++V+AGL+K++I + + P L +IP+LGAL R++ F ++TE+ TP LV+ A+ Sbjct: 382 QSLVIAGLIKNNITEAVKRFPGLGEIPVLGALARSTEFQTDQTELMFIITPRLVQ--ALA 439 Query: 426 DLSR-PDDHYSVEDDAKAFF 444 + R P D++ A+ + Sbjct: 440 EAPRVPTDNHVPPSRAEVYL 459 >gi|227820510|ref|YP_002824481.1| type II and III secretion system protein RhcC2 [Sinorhizobium fredii NGR234] gi|227339509|gb|ACP23728.1| type II and III secretion system protein RhcC2 [Sinorhizobium fredii NGR234] Length = 447 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 115/392 (29%), Positives = 190/392 (48%), Gaps = 18/392 (4%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 G+ + + + + IL+ V+ V ++D ADV V SP +Y++ G N+I + D Sbjct: 43 NGQVLELTVGEGTILRFDEPVESVFLADTAIADVRVVSPGVVYIYATKTGDTNLIALSAD 102 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + + + E + + + + + V G R + + A+++ Sbjct: 103 QMTRGTVQVRVSGNPRAAEQSALALQPTTRVDISLFGGQYVGTGQTRNVGE---AMDMES 159 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 S S + + +N IAG +QV ++V AEV R+ L + G S+ +S Sbjct: 160 VLQSYS-------TPDRPALNNTTIAGSNQVNIRVRFAEVARNELTRFGIDWSLFVNSG- 211 Query: 226 PSKSFA-ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 S SF GG + ++ D + +L AL+ + LAEP +TA++GQ+ Sbjct: 212 -SFSFGIVRTGGASNEDDTGIAIGARGDHVNVNVLLDALQANGILTILAEPNITAVTGQT 270 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 ASF +GG+ + V + G + +GV L FTPT+L RI L+++ EVS Sbjct: 271 ASFLAGGE-IPVPVPAGDGQIGIEYKQFGVSLQFTPTLLPNNRIALQVRPEVSSVSQDSV 329 Query: 345 AGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +PS R+R+ADT VE+ SG T +AGL + Q P++ +PILG LF++ Sbjct: 330 VSISGLVVPSLRIRRADTAVEVGSGQTFAIAGLFQRQESQTLNKTPVVGDVPILGELFKS 389 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 RF R ETE+ I TP+LV P + R++ P D Sbjct: 390 KRFQRNETELVILITPYLVTPTSERNMKTPLD 421 >gi|149911409|ref|ZP_01900027.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36] gi|149805517|gb|EDM65522.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36] Length = 489 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 119/416 (28%), Positives = 199/416 (47%), Gaps = 42/416 (10%) Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 LQ+ + V V + AD+++ R +Y+ GK +G N+++ D + ++ + D Sbjct: 55 LQMDKAIHRVSVGNSDIADILILRSRELYIVGKRLGTTNMMVWDKDDNLVHVQNLEVTHD 114 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + L L +++ + +I VE +V+ G V ++ AVE++E + + + Sbjct: 115 LNSLRKRLYKYLPNEDIGVETSQGQLVVSGQVSSLVKMNTAVEIAEGYATAAN----VGK 170 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI------------GFQHSITGSSSGPS 227 S+ V+N++++ G QV L+VT+AEV DI + + GF TG+ + P+ Sbjct: 171 SNSIVVNMMSVGGGQQVMLEVTVAEVSTDIGRNLDGNTVLGAFGSDGFAGIGTGTGNVPT 230 Query: 228 K---SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 S + ++++ GD F + + LAEP LTA+SGQS Sbjct: 231 NILGSIDTNIFARYLT--GDML---------FSVAFDVAKSKGLTKILAEPNLTALSGQS 279 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340 A F SGG+ Y S+ ++ D+GV + F PTVL G+I L ++ VSE Sbjct: 280 AEFLSGGE--YPVPVSTDDGITIEYRDFGVGVSFVPTVLDSGKINLNLKVLVSELSSVNS 337 Query: 341 IGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + ++A D PS R TTVEL G TIV+ GLL D +++ P L IPIL Sbjct: 338 VTISASDTNTSTITPSLIKRSTATTVELGDGQTIVIGGLLSDSLRESITKFPGLGDIPIL 397 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 G LF + + +TE+ I TP LV+P + P D + D + + ++ + Sbjct: 398 GQLFTSQEYISGQTELVIMVTPRLVRPFNKDGMILPTDGFVPVSDMEFYLLGKMTQ 453 >gi|254506750|ref|ZP_05118890.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus 16] gi|219550331|gb|EED27316.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus 16] Length = 487 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 124/431 (28%), Positives = 213/431 (49%), Gaps = 34/431 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 GK + + +K + + + V + DP D+V+ ++L GK +G N++ G Sbjct: 25 GKIVKVPHHKSTHVTLAGKAKRVSLGDPEVLDIVMLKSDEVFLIGKKLGSTNLMAWDRRG 84 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + +++I + D+ L+ L F+ + I+V + ++L G + + A+ ++ET Sbjct: 85 QLIESINIEVTHDLNSLKAKLYEFLPNEEIKVHSAQNRLILSGQISSQSAMNIALRVAET 144 Query: 167 FLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQ 216 + + ++ S S++V +NL+ I G QV L+VT+AEV+R ++++ F+ Sbjct: 145 YSAGQEVDKENKSLSEQVQKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKFDSNFHFFE 204 Query: 217 HSITGSSSGPSK-SFAADFGGK----FVSEGGDFSVKGVLDRF-----SFETVLHALERA 266 + + S G S + D GG F + G D + G+L F F L ++ Sbjct: 205 SNGSFSWGGTSAGAIIDDVGGGIGPIFNTPGIDST--GLLGTFIDGDTLFTFALDIAKQN 262 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP LTA+SG A F +GG+ V G T + +YGV L F PTVLS Sbjct: 263 GTAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDENGIT-IEYKEYGVGLKFIPTVLSDK 320 Query: 327 RIGLRIQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 I L + +VSE + ++ G +P R A +T+EL G TI +AGLL + Sbjct: 321 NINLNLAVDVSEIANTSSLTLSPGGTNSTYVIPPITRRSASSTLELADGQTIGIAGLLSE 380 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 +++ + G+P S IP+LG +F + + ETE+ I TP L KP+ +S P D + Sbjct: 381 NVRDVVSGMPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRNRVSLPTDSFVE 440 Query: 437 EDDAKAFFFNR 447 +D + + R Sbjct: 441 PNDFEYYLLGR 451 >gi|218660088|ref|ZP_03516018.1| pilus assembly secretion protein [Rhizobium etli IE4771] Length = 157 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 82/152 (53%), Positives = 109/152 (71%), Gaps = 4/152 (2%) Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 K + ++ T L+ALE+A +RTLAEPTLTAISGQ+A+F SGGQ LY T + + G +V Sbjct: 10 KSSIGKYDISTYLNALEQAKVVRTLAEPTLTAISGQAATFNSGGQQLYST-TDNDGNVTV 68 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 +YG+ L F P VLS GRI L I+T VSEPV G +G+ +Y+ R A+T+VELPSGG+ Sbjct: 69 VPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAG--SGNA-TYQRRSAETSVELPSGGS 125 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 I LAGL++D++ Q G P +SKIP+LG LFR Sbjct: 126 IALAGLIRDNVSQTMGGTPGVSKIPLLGTLFR 157 >gi|307726375|ref|YP_003909588.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] gi|307586900|gb|ADN60297.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] Length = 616 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 120/424 (28%), Positives = 211/424 (49%), Gaps = 35/424 (8%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + + + + K ++ V++ + +P A + SP+T+Y+ G VG N+I+ G G Sbjct: 89 RTVVVPVGKSTLMPTAEPVRNRTLGNPLVAQATMVSPQTLYVVGMAVGTTNMIVQGKSGA 148 Query: 108 QMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +++++ D L+ +L + + D NIRV V+ +VL G V + Q + +A E+++ Sbjct: 149 CEV-INVVVNADSGGLQTSLSQLMPDEPNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKA 207 Query: 167 FLSQS--------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + + N A + V+N++++ QV L+V +AEV + +L Q+G + Sbjct: 208 YARSTLPGASGGANGNGTAAGKTATVLNMMSVDSPQQVMLEVKVAEVSKTVLNQLGAAMN 267 Query: 219 ITGSSSGPSKSFAADFGGKFVSE--GGDFSVKGV--LDRFSFETVLHALERATAIRTLAE 274 I G F + + G +S G S+ V + F + ++ LAE Sbjct: 268 IQGG-------FGS-WSGALISSLLAGVSSIVDVNKANNRPFNVAIDGQHGDNLVKILAE 319 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLR 331 P L +SGQ A+F +GG+ S+ S + ++GV L FTPTVL+ GRI L+ Sbjct: 320 PNLVTLSGQEATFLAGGKVFIPIPQSNLNGVSTIILQEEEFGVGLKFTPTVLAGGRINLK 379 Query: 332 IQTEVSE-PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + EVSE GV G +P R+A TTV++ G T + GL+K++ Sbjct: 380 VAPEVSELSSTGVTVGATNTNNLTVLPLITTRRASTTVQMNDGETFAIGGLIKNNAAGTL 439 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAK 441 + IP + ++P+LGALFR++ + ++ TE+ TP LVKP+ +L P D ++A Sbjct: 440 KAIPGVGEVPVLGALFRSTSYQQDRTELVFIITPHLVKPLQTAANLPLPTDRLKTPNEAD 499 Query: 442 AFFF 445 + Sbjct: 500 VYLM 503 >gi|317491683|ref|ZP_07950118.1| type II and III secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920117|gb|EFV41441.1| type II and III secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 467 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 112/398 (28%), Positives = 203/398 (51%), Gaps = 42/398 (10%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++QV ++ + +S P AD + R + ++ K+ G+ ++I +G Q++ ++++ Sbjct: 51 VIQVNGNIDTIFISAPKVADYEIIGERGVMVYAKSEGKTDLIAFDKNGDQLVKTTLVVDP 110 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS---GRNQ 175 ++ L+ + + DS I ++ + T +L G V T +D R ++ + + + + Sbjct: 111 ILSSLQKKVSSLVPDSQITLQKMGKTYILSGSVATEEDRDRVYQIVGEGVGATRTTNKKE 170 Query: 176 YANSSS------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 AN++ ++V+N L + +QV +K+++ EV + +G Sbjct: 171 VANTNGGSGGNGENSNSWLDEVVYQEVINQLKLPMTNQVNVKLSVVEVTKTFSDNVGIDW 230 Query: 218 -SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 +I+GS G ++ G VK D S +++HA+ + R LAEP Sbjct: 231 GTISGS-------------GGNITPGTFRFVKFNADTLS--SLVHAISNDSVARVLAEPN 275 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L+ +SG+SA F GG+ V+SS ++V D+G+ L+ V S RI + + EV Sbjct: 276 LSVLSGESAEFLVGGE--VPVVTSSANGSNVQYKDFGIKLNVGAKVSSNKRIRVTLGEEV 333 Query: 337 S--EPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 S + NAGD P+++ R+A TTVEL G + +L GL+ ++ ++ +P + +PI Sbjct: 334 SNVDSTYSTNAGDSFPAFQTRRAKTTVELADGESFLLGGLISNNEREELSRLPFIGDVPI 393 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 LGALFRN++ R E+ + AT LVKPV MRD+ PD Sbjct: 394 LGALFRNAKTERSRGELVVVATVNLVKPVTMRDIVMPD 431 >gi|145219384|ref|YP_001130093.1| type II and III secretion system protein [Prosthecochloris vibrioformis DSM 265] gi|145205548|gb|ABP36591.1| type II and III secretion system protein [Chlorobium phaeovibrioides DSM 265] Length = 472 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 132/447 (29%), Positives = 209/447 (46%), Gaps = 54/447 (12%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + +G ++V L+ P+ + V V +P AD ++ + +YL GK G N+IL GK Sbjct: 39 VPVGESRVYRLEQPI--KRVAVGNPEVADYIMLNSSELYLLGKKTGATNLILWNQQGKFT 96 Query: 110 LNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 L + + R+ ++ LR + + S I++ + +VL G V ++ A L + +L Sbjct: 97 STL-LQVSRNSYPIKQLLRTALPEESEIQIFSSGEALVLAGSVSNRLAAETAYRLVKAYL 155 Query: 169 SQSGRNQYANSSSKK----------------------------------VMNLLNIAGED 194 + SS K V+NLL + Sbjct: 156 GGKVPDVNPESSLAKTTSASAASASIAGTTNGSSAVPVQASTQSTAPAGVVNLLTVRDTQ 215 Query: 195 QVTLKVTIAEVRRDILKQ--IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L+V IAEV + L+ IG+Q TG++ G FVS + Sbjct: 216 QVRLEVRIAEVSKTYLQTLGIGWQQG-TGNTQG-------SLMTGFVSNATLNVLLQTKS 267 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 E + A + I+ LAEPTL A+SG+ F GG+ TV+S+ GA Y Sbjct: 268 NPGNELSMDAERKEGVIKILAEPTLVAMSGEEGYFLVGGKVFTPTVTSN-GAIDYVERTY 326 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGD---MPSYRVRKADTTVELPSGGTI 368 GV L FTPTVL GRI L++ EVSEP+ V AG +P ++ A +TV++ G + Sbjct: 327 GVGLRFTPTVLDSGRISLKVAPEVSEPLKEAVTAGTSTPLPGFKTSFASSTVQMNEGENL 386 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 V+ GLL+D++ ++ +PLLS IPILG+LFR++ + E TE+ + P L+K + Sbjct: 387 VIGGLLRDNLTEVVRAVPLLSDIPILGSLFRHTEKSSETTELMVIIRPTLIK-ASTTAQE 445 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPK 455 P D ++ ++ F ++ G K Sbjct: 446 LPTDKFAPPSSSELFLEGKLQGSRGSK 472 >gi|258405291|ref|YP_003198033.1| type II and III secretion system protein [Desulfohalobium retbaense DSM 5692] gi|257797518|gb|ACV68455.1| type II and III secretion system protein [Desulfohalobium retbaense DSM 5692] Length = 455 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 124/422 (29%), Positives = 205/422 (48%), Gaps = 42/422 (9%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT-KADVVVHSPRTMYLFGKNVGQ 96 N +D I + +++ G K ++L+ ++ V DP D ++ P +YL G Sbjct: 42 NSADDSIMRSLELTYG--KSVVLKSNREITRVSEPDPNVLKDPLLIGPNELYLTPAGAGT 99 Query: 97 ANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTI 154 AN+IL GK++ + +I ++ D++ L+ L + N +RV ++++ L G V + Sbjct: 100 ANLIL--WQGKEVSTVYEITVKHDLSRLKQRLHELFPEENELRVLSTNESITLSGQVSSA 157 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + + L+ET+ + G + N + + G QV L+V +AEV R L ++G Sbjct: 158 SALDQIMALAETYAPEGG-----------IKNQVTVKGIHQVMLEVKVAEVSRQSLDRLG 206 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALER 265 + AA+F F+ +F G D F + L+R Sbjct: 207 INFDLIND--------AAEFSIGFLGAASAGSSGSGSFNFWRNG--DNVDFNGLFDFLKR 256 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + LAEP+L ++SGQ++SF +GG+ V S G V YG+ L FTPTV+S Sbjct: 257 EGLAKILAEPSLISMSGQTSSFLAGGEIPIPDVDSD-GNIGVEFKSYGIELAFTPTVMSK 315 Query: 326 GRIGLRIQTEVSE--PVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI +++ VSE G +N +P +VR+A+TTVEL G + +AGLL ++ ++ Sbjct: 316 ERIAIKVVPVVSELDEASGTVINGAQVPGLKVRRANTTVELGDGQSFAIAGLLSENSEET 375 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 P L +P+LG LF + F +ETE+ I TP LV P+ S P D + DA+ Sbjct: 376 VSKFPGLGDLPVLGPLFTSKSFTSDETELVIMVTPKLVTPLVAEKQSLPTDFFIHPTDAE 435 Query: 442 AF 443 + Sbjct: 436 FY 437 >gi|260776715|ref|ZP_05885610.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] gi|260607938|gb|EEX34203.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] Length = 476 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 126/434 (29%), Positives = 207/434 (47%), Gaps = 53/434 (12%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 +GK K++S+G DP D+V+ ++L GK +G N++ Sbjct: 30 VGKAKRVSLG-------------------DPEVLDIVMLKSNEVFLIGKKLGSTNLMAWD 70 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 G+ + +++I + D+ L+ L F+ D I V + ++L G+V + A+ + Sbjct: 71 SRGRLIESINIEVTHDLNSLKAKLFEFLPDEEIGVHSAQNRLILSGLVSSQSAMNIALRV 130 Query: 164 SETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIG---- 214 +ET+ + ++ S S++V +NLL I G QV L+VT+AEV+R ++++ Sbjct: 131 AETYAAGQEVDKETESLSEQVSKTGVINLLTIGGAQQVMLEVTVAEVQRTLVRKFDSNFH 190 Query: 215 -FQHS----ITGSSSGPS-----KSFAADFGGKFVSEGGDFSVKGVLDRFSFET-VLHAL 263 FQ S G+S+G S A F + G ++D +F T L Sbjct: 191 FFQSSGDFNWGGTSAGGSIDDVNNVVAPIFNAPTIENTGLLGT--LIDSNTFFTFALDIA 248 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 ++ + LAEP LTA+SG A F +GG+ V G T + +YGV L F PT+L Sbjct: 249 KQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIP-VPDEDGIT-IEYKEYGVGLKFIPTIL 306 Query: 324 SPGRIGLRIQTEVSEPVI---------GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGL 373 + +I L + +VSE G NA +P R A +T+EL G TI +AGL Sbjct: 307 TDQKINLNLAVDVSEIANSATLTLAPGGTNATYVIPPITRRSASSTLELADGQTIGIAGL 366 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L ++++ +P S IPILG +F + + ETE+ I TP L KP+ ++ P D Sbjct: 367 LSENVRDSVAEMPGFSDIPILGQMFNSQEYISGETELVILVTPRLAKPIDRNRVTLPTDS 426 Query: 434 YSVEDDAKAFFFNR 447 + +D + + R Sbjct: 427 FVEPNDFEYYLLGR 440 >gi|238782881|ref|ZP_04626910.1| Type II/III secretion system protein [Yersinia bercovieri ATCC 43970] gi|238716304|gb|EEQ08287.1| Type II/III secretion system protein [Yersinia bercovieri ATCC 43970] Length = 426 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 116/395 (29%), Positives = 197/395 (49%), Gaps = 29/395 (7%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 K + I + I++ ++ V VS AD + + ++ ++ K+ G +IL Sbjct: 17 ANAKSVYISPGESYIIKTEAEIDTVFVSSAAVADYELVNKNSIIVYAKSEGTTEIILFDD 76 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR-AVEL 163 + + IL+ I + DSNI ++ + D+ +L G+V + ++ A + Sbjct: 77 KHQVLAKKTILVNNIINAANKRVLIEYPDSNIDIDKIGDSYILTGIVESEEEKDTLATIV 136 Query: 164 SETFLSQ----SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 E SQ S R + ++N L + +QV +K+TIAEV +D + +G S Sbjct: 137 GEAIGSQKEKTSERQYLSTPDYAHIVNKLKLPQANQVNVKLTIAEVTKDFTENVGVDWST 196 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G + G SF +FV F+ G+ T++HA+ + R LAEP L+ Sbjct: 197 MGDAIG---SF------QFVK----FNANGI------STLVHAINDESIARVLAEPNLSV 237 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 +SG+SASF GG+ S++ + +VT ++G+ L+ V RI + + EVS Sbjct: 238 LSGESASFLVGGE--IPIASNTENSQTVTYKEFGIKLNIGAKVNEKKRIRILLNEEVSSI 295 Query: 339 -PVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + GD PS + RKA TT+EL G + +L GL+ + ++ + IP + IPILGA Sbjct: 296 GKSFSMEGGDSYPSLKTRKAATTLELGDGESFILGGLISNSERESLKKIPFIGDIPILGA 355 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 LFRN++ + +TE+ + AT LVKPV+ +++ PD Sbjct: 356 LFRNAQTEQSQTELVVIATVNLVKPVSRKEIELPD 390 >gi|238793622|ref|ZP_04637245.1| Type II/III secretion system protein [Yersinia intermedia ATCC 29909] gi|238727037|gb|EEQ18568.1| Type II/III secretion system protein [Yersinia intermedia ATCC 29909] Length = 425 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 115/383 (30%), Positives = 195/383 (50%), Gaps = 32/383 (8%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 I++ ++ V VS AD + ++ ++ K G A IL D M+ I++ Sbjct: 29 IIKTEEEIDTVFVSTAAIADYELVGKNSIIVYAKKEGTAEFILFNKDNHPMIKTTIMVND 88 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT--IQDSQRAVELSETFLSQSGRNQ- 175 I ++ DSN+ + + ++ +L G + +D+ A+ + E + +N+ Sbjct: 89 IITSAYQRIKIEYPDSNVEINKIGNSYLLTGKAESEEAKDTIAAI-IGEAINKKREQNRE 147 Query: 176 ---YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFA 231 + N + V+N + + +QV +K+TIAEV +D + IG S I+ +S G SF Sbjct: 148 DQHFNNPNYLGVINKIKLPESNQVNVKLTIAEVTKDFSENIGVDWSSISEASVG---SF- 203 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 KF+ F+ G+ T++HA+ + R LAEP L+ +SG+SASF GG Sbjct: 204 -----KFLK----FNATGI------STLVHAINDDSIARVLAEPNLSVLSGESASFLVGG 248 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD-M 348 + +++ +T + YG+ L+ V RI + ++ EVS + V V G+ Sbjct: 249 E--IPMFNTNQNSTIIKYKTYGIKLNIAAKVNEKNRIRISMEEEVSSVDKVFNVEGGNAY 306 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS R RKA TT+EL G + +L GL+ ++ + IP + IPILGA FRN++ +++T Sbjct: 307 PSLRTRKAATTLELGDGESFILGGLISKSERESLKKIPFIGDIPILGAFFRNAQTQKQQT 366 Query: 409 EIFIAATPFLVKPVAMRDLSRPD 431 E+ + AT LV PVA +D+ PD Sbjct: 367 ELVVVATVSLVNPVAGKDVELPD 389 >gi|77919345|ref|YP_357160.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380] gi|77545428|gb|ABA88990.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380] Length = 507 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 127/450 (28%), Positives = 211/450 (46%), Gaps = 39/450 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILIGH 104 ++IG ++++ ++ P +L+S+ D++ P +Y GK +G + V + Sbjct: 38 VNIGGSELVEIREPSQRMKILISN---GDIIGARPLRPNLINVYNLGKKIGFSRVTVWDD 94 Query: 105 DGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 +Q+ + D+ + D+ L+ + NI+V VVL G V + + ++ + L Sbjct: 95 AARQVRAIIDVSVNLDLTPLKQKIGELYPHENIKVYASETGVVLSGTVSSPEVVEQVIRL 154 Query: 164 SETFLSQSGR----NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR----DILKQIGF 215 +ETFL + + S + NLL++ G QV L+V AEV R D +GF Sbjct: 155 TETFLPKKAEASTSGKGTGKSGSGITNLLSVGGVQQVMLEVKFAEVTRSSGRDWQAALGF 214 Query: 216 QHS------ITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGV---LDRFSFETVLHAL 263 + G DF GK S DF+ + F + L L Sbjct: 215 NGLGDNSGLVAGVGGISGDISGGDFTGKLGSVLLNFADFASNPANIFVQMGDFTSALRFL 274 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E R LAEP L +SGQ ASF +GG+ + ++ ++GV L FTP V+ Sbjct: 275 EDEGLARILAEPRLVTMSGQEASFLAGGE--FPIPVPDEDGITIEFREFGVSLRFTPVVM 332 Query: 324 SPGRIGLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSGGTIVLAGLLK 375 S G+I LR+ VS+ + ++P+ RK +TTV+L G T+ LAGLL+ Sbjct: 333 SDGKISLRVAPSVSDIASTSSIPSSITGTTYNVPNLTTRKLETTVQLYDGQTLALAGLLQ 392 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 D +++ IP L +PILGALFR++ + +E+T++ IA TP LVKP LS P ++ Sbjct: 393 DTLRESVSKIPGLGDLPILGALFRSTSYTQEKTDLLIAVTPHLVKPSKEGTLSFPGEYMR 452 Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 + + + R+ P + S + ++ Sbjct: 453 PPNRLEFYLEGRLEGRRFPNDPSALSQHSF 482 >gi|261251598|ref|ZP_05944172.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] gi|260938471|gb|EEX94459.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] Length = 457 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 119/404 (29%), Positives = 199/404 (49%), Gaps = 36/404 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + +N+ ++ +P D + + +S+ AD + + +FG G A + ++ + + Sbjct: 27 LEVNINEAKMINLPQDAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITILNAQERVI 86 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N I + D L+ + ++++ E + + L G V T + V +++ +LS Sbjct: 87 YNNKIRVVHDTKELDSLIAAQFPEASVHSESLGGKLWLKGNVPTPVMAHSIVSVAKGYLS 146 Query: 170 -----QSGRNQYANS----------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 Q N +S +S +++N L + QV ++V IAEV R++ ++G Sbjct: 147 PVIAPQQSENGSTSSDSSTQNSGSDNSDELVNQLMVTMPTQVNIRVRIAEVSRNVSNKLG 206 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + S A G ++ D S G + + ++ AL + LAE Sbjct: 207 IKWG----------SLQAGMGSFLYTKAWDVSSWG---KPTLGALVDALASDGTMSILAE 253 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P LTA+SG+ ASF GG+ ++ T +V +GV L+FTP VL P RI LR+ Sbjct: 254 PNLTAMSGEDASFLVGGEIPLPLINGDTA--TVEYKPFGVNLNFTPVVLGPDRISLRVSP 311 Query: 335 EVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLS 389 EVS + +N PS+ R+A TT+EL SG + L GLL+ +I QL++ +P Sbjct: 312 EVSSVSVDNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQK-LPGAG 370 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 IPILG LFR+S + R+ETE+ I AT +LV+PV L P D+ Sbjct: 371 DIPILGGLFRSSEYQRKETELIIIATAYLVEPVRNDALPLPTDN 414 >gi|13475417|ref|NP_106981.1| pilus assembly protein [Mesorhizobium loti MAFF303099] gi|14026169|dbj|BAB52767.1| pilus assembly protein [Mesorhizobium loti MAFF303099] Length = 481 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 126/462 (27%), Positives = 216/462 (46%), Gaps = 36/462 (7%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 F+ M+ S ++ + +A I++S+ + ++ + +++ + + V + Sbjct: 4 FWVRMAAVALSCFATLPTWSLVADAADRFIDVSNPSV---HRVFLPMSQSVTIAVNATLG 60 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 D++V D AD + RT+Y+ GK G V L + + + + I + D++ + + Sbjct: 61 DIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSPEKRSLGVIQIEVGVDVSDMAQAI 120 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 R+ S I V V+ V L G V+ +E+++ QY ++N Sbjct: 121 RQVAPRSRIEVASVNGRVRLGGHVKDGVTMAAILEVAK---------QYG---PDDIINS 168 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQ--------HSITGSSSGPSKSFAADFG-GKF 238 + I QV L+V I E +R+ + +G +I G+ G G F Sbjct: 169 VTIDDSQQVNLEVRILEAKRNAGRDLGVSIRSNNSRSTTIVGTGIAAVDKDNVVLGTGGF 228 Query: 239 VSE-------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 +S+ G + + + + + ALE A+RTLA P LT +SG+ ASF +GG Sbjct: 229 LSDLLSTSTPFGALLTRVIDNNIKVDLYIEALEAKGAVRTLANPNLTTLSGEQASFNAGG 288 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 + +T+ + G S+ +GV L FTP VL G+I + + EVS+ AGD P + Sbjct: 289 EVPIRTLDKN-GEISIVYKQFGVNLLFTPVVLDDGKIHMNLAPEVSDLNGFTTAGD-PIF 346 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 RK T VEL G + + GLL +L+ +P L ++P++G LFRNS +EETE+ Sbjct: 347 TNRKLSTVVELRDGQSFAVGGLLSSRTTKLQNQVPWLGQVPVIGTLFRNSSNQKEETELV 406 Query: 412 IAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNR--VNK 450 + TP +V+PV L+ P D +D + F + VNK Sbjct: 407 VIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQLEVNK 448 >gi|323493503|ref|ZP_08098625.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546] gi|323312326|gb|EGA65468.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546] Length = 458 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 112/404 (27%), Positives = 194/404 (48%), Gaps = 37/404 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + +N+ ++ +P D + + +S+ AD + + +FG G A + ++ + + Sbjct: 27 LEVTINQAKMINLPQDAKSIFISNTHVADYQPMTNTKIMVFGLQAGSATITILNAQERVI 86 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N I + D L + +++++ E + + L G V T + V +++ +LS Sbjct: 87 YNNKIRVTHDTFELNSLISSQFPEASVKSESLGGKLWLKGSVPTPVMAHSIVNIAKGYLS 146 Query: 170 QSGRNQYA----------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 Q + S +++N L + QV ++V IAEV R++ ++ Sbjct: 147 PPTAGQSSDSSSDSESSNNTSEQQGDSGNELVNQLVVTMPTQVNIRVRIAEVSRNVSNKL 206 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G + S + G ++ D S G + + ++ AL + LA Sbjct: 207 GIKWG----------SLESGMGSFLYTKAWDVSSWG---KPTLGALIDALASDGTMSILA 253 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 EP LTA+SG+ A+F GG+ + T +V +GV L+FTP VL P RI LR+ Sbjct: 254 EPNLTAMSGEEANFLVGGEIPLPLIIGDTA--TVEYKPFGVNLNFTPVVLGPDRISLRVS 311 Query: 334 TEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLL 388 EVS + +N PS+ R+A TT+EL SG + L GLL+ +I QL++ +P + Sbjct: 312 PEVSSISVDNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQK-LPGI 370 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 +P+LG LFR+S + R ETE+ I AT +LV+PV + P D Sbjct: 371 GDMPVLGGLFRSSDYQRRETELIIIATAYLVEPVRNDAIPLPTD 414 >gi|54309660|ref|YP_130680.1| Flp pilus assembly protein [Photobacterium profundum SS9] gi|46914098|emb|CAG20878.1| hypothetical Flp pilus assembly protein [Photobacterium profundum SS9] Length = 461 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 121/404 (29%), Positives = 195/404 (48%), Gaps = 47/404 (11%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 I LN L+ P ++ V VS P D V R + +F +GQA VI+ G + + +L+ Sbjct: 34 ITLNDANNLEFPQEIGTVFVSQPDILDYKVIDNRKLVIFSNKIGQAKVIVYGKENQVLLS 93 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 ++ +++ + L+ + D NI V V + V + G V + + T L + Sbjct: 94 QRYHVDINLSQVRRQLKLYYPDLNISVSSVGEQVAVRGTVNNEKQRDDIYRMVATLLGKK 153 Query: 172 GRNQYANSSSKK----------------------VMNLLNIAGEDQVTLKVTIAEVRRDI 209 +Y + K ++ L IA QV +K+++A+V ++ Sbjct: 154 EIERYNEAEKLKFVESGFEEANWVRYSKNYIWEGIVEGLVIAQAQQVNVKISVAQVTKEF 213 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + IG S G S G SF KF + D S TV++A+ Sbjct: 214 NETIGVDWSTVGRSVGEF-SFL-----KF--KANDLS-----------TVINAIGNDNIA 254 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 LAEP LT +SG+SASF GG+ + ++ +T+++ ++G+ L + VLS I Sbjct: 255 EILAEPNLTVLSGESASFLVGGE--VPVIVTNDNSTNISFKEFGIKLELSAKVLSNKSIK 312 Query: 330 LRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIP 386 L++ EVS E + ++P R+A TT++L G + +L GL+ DDI+++ + IP Sbjct: 313 LQLAPEVSAVEGYVKAAGIEVPQLSSRRAMTTIQLADGDSFMLGGLMSSDDIEEISK-IP 371 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 LL IPILGA FR S R++TE+ I AT LVKPV+ D+ P Sbjct: 372 LLGDIPILGAAFRKSSTTRKKTELVIVATVNLVKPVSPTDVRLP 415 >gi|87312292|ref|ZP_01094390.1| putative outer membrane channel for pilus assembly CpaC [Blastopirellula marina DSM 3645] gi|87284996|gb|EAQ76932.1| putative outer membrane channel for pilus assembly CpaC [Blastopirellula marina DSM 3645] Length = 534 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 121/398 (30%), Positives = 188/398 (47%), Gaps = 31/398 (7%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV N++ +++ + +N I + + V++P + SP + + Sbjct: 25 AVPNVNFKVDAPNQRLEMMVNSSRIFTLDEKIPKAQVNNPDLLRLTPLSPNKIQVSALKP 84 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G V L DG + +DI++ D L++ L +S+I+V ++ +VVL G V Sbjct: 85 GVTQVNLWNEDGT-IHTIDIIVIGDGRELQLLLETEFPNSSIKVRPLASSVVLSGYVDRP 143 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + R V ++E + KV+N + + G QV LKV + EV R L+++G Sbjct: 144 EAVSRIVAMAEDYY-------------PKVINNITVGGVQQVMLKVKVYEVSRTKLRRLG 190 Query: 215 FQHSITGS-------------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + GS +G S A D G + F V G F L Sbjct: 191 IDWAAIGSDYFISSTAANVLTPAGVLTSGARDALGA-TGQTVQFGVLG--SSTQFFGFLD 247 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + + AEPTLT ISG+ ASF SGG+ + V+S G TS+ YG + F P Sbjct: 248 ALRQNNVAKLSAEPTLTTISGRPASFLSGGEVPIQ-VASGLGTTSIEYKQYGTRVDFVPI 306 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 VL G + L ++ EVSEP V P +R+R DT VE+ +G + LAGL+++ I+ Sbjct: 307 VLGNGNLKLEVRPEVSEPDYSVAINGTPGFRLRWVDTAVEMKAGQSFALAGLIQEKIETE 366 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+P L+ +P +GA FR + +R E E+ I TP LV Sbjct: 367 TRGLPYLADLPWVGAAFRRNTDSRNEVELLIIVTPELV 404 >gi|149188863|ref|ZP_01867153.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1] gi|148837283|gb|EDL54230.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1] Length = 456 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 112/407 (27%), Positives = 200/407 (49%), Gaps = 49/407 (12%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN +Q+ + + V +S+P AD + + T+ +F VGQ+ +I+ G + +L Sbjct: 34 SITLNDGQHIQLKMPIGKVFISNPAIADYKIINDNTLVVFANGVGQSRLIVYGTNNDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ D++ + L+ D+ ++V+ V + V + G+V + Q L T L + Sbjct: 94 SDRIIVDLDLSEVRRQLKFHFPDAKVKVQSVGEQVAVSGVVDSEQTRDDIYRLVATLLGR 153 Query: 171 SGRNQY------------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ N + + ++ + +A QV +K+++A+V Sbjct: 154 EKIKKWDKTEKLEFKSEHMERKEPESMVFARNMTWEGILERIEVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 K +G S GSS G +FV + D + T++ AL Sbjct: 214 ESFGKTVGVDWSSVGSSVG-----------EFVFDQ--------FDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP LT +SG+SASF GG+ + S++ ++T ++G+ L T VLS Sbjct: 255 SIAEVLAEPNLTVLSGESASFLVGGE--VPVIVSTSNNVNITFKEFGIKLDLTAKVLSQD 312 Query: 327 RIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKE 383 +I +++ EVSE V A +P R+A TTVEL G + +L GL+ D++++++ Sbjct: 313 KIRMQLSPEVSEVESYVEAAGVKVPQLASRRAMTTVELADGDSFILGGLMSSSDLEKMQK 372 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + +P+LGA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 373 -IPFIGDVPVLGAAFRKATTQRKRTELIIVATVNLVEPMKPKDIQLP 418 >gi|218708107|ref|YP_002415728.1| putative bacterial type II secretion system protein D; rcpA, CpaC [Vibrio splendidus LGP32] gi|218321126|emb|CAV17076.1| putative bacterial type II secretion system protein D; rcpA, CpaC [Vibrio splendidus LGP32] Length = 435 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 185/384 (48%), Gaps = 38/384 (9%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 ++ V +S AD V + +FGKN+G A+ I G+++ N +L+ + +E Sbjct: 35 EIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAKGRELFNRLLLVNKSYREIE 94 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN---QYANSSS 181 + D+ + V + + VVL G+V Q+ +L L ++ + Q ++ S Sbjct: 95 QQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVGELLGKTANSTSFQMSDEES 154 Query: 182 KKV----MNLLNIAG---------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 + M LN AG QV +K+TIAEV ++ G + GS+ P Sbjct: 155 DDIDVGFMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSFMQDFGIK---MGSNGTP-- 209 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G FV + FS ++ +V+ AL + + LAEP L+ ISG+ ASF Sbjct: 210 -------GIFVDQLTHFSASDIV------SVISALGTDSVGQVLAEPNLSVISGEKASFL 256 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG 346 GG+ V+ GAT+V ++GV L VL +I L + EVS + + Sbjct: 257 VGGE--LPVVTVIDGATNVEYKEFGVRLELLAKVLRDDKIKLALTPEVSSLDGSYSSDNF 314 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+P+ R R+A TTVEL G + VL GLL + ++ IP + IPI+GALFR++ R Sbjct: 315 DLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPYIGDIPIIGALFRHTGTERS 374 Query: 407 ETEIFIAATPFLVKPVAMRDLSRP 430 +TE+ I AT LV+PV + P Sbjct: 375 KTELVIVATVNLVQPVKAEQIQLP 398 >gi|86147184|ref|ZP_01065500.1| general secretion pathway protein D [Vibrio sp. MED222] gi|85835068|gb|EAQ53210.1| general secretion pathway protein D [Vibrio sp. MED222] Length = 439 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 185/384 (48%), Gaps = 38/384 (9%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 ++ V +S AD V + +FGKN+G A+ I G+++ N +L+ + +E Sbjct: 39 EIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAKGRELFNRLLLVNKSYREIE 98 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN---QYANSSS 181 + D+ + V + + VVL G+V Q+ +L L ++ + Q ++ S Sbjct: 99 QQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVGELLGKTANSTSFQMSDEES 158 Query: 182 KKV----MNLLNIAG---------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 + M LN AG QV +K+TIAEV ++ G + GS+ P Sbjct: 159 DDIDVGFMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSFMQDFGIK---MGSNGTP-- 213 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G FV + FS ++ +V+ AL + + LAEP L+ ISG+ ASF Sbjct: 214 -------GIFVDQLTHFSASDIV------SVISALGTDSVGQVLAEPNLSVISGEKASFL 260 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG 346 GG+ V+ GAT+V ++GV L VL +I L + EVS + + Sbjct: 261 VGGE--LPVVTVIDGATNVEYKEFGVRLELLAKVLRDDKIKLALTPEVSSLDGSYSSDNF 318 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+P+ R R+A TTVEL G + VL GLL + ++ IP + IPI+GALFR++ R Sbjct: 319 DLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPYIGDIPIIGALFRHTGTERS 378 Query: 407 ETEIFIAATPFLVKPVAMRDLSRP 430 +TE+ I AT LV+PV + P Sbjct: 379 KTELVIVATVNLVQPVKAEQIQLP 402 >gi|193213115|ref|YP_001999068.1| type II and III secretion system protein [Chlorobaculum parvum NCIB 8327] gi|193086592|gb|ACF11868.1| type II and III secretion system protein [Chlorobaculum parvum NCIB 8327] Length = 472 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 124/442 (28%), Positives = 206/442 (46%), Gaps = 60/442 (13%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++S G ++V + P+ + V V +P AD ++ +P +YL GK G N+I+ +G Sbjct: 37 RVSEGESRVYRMGSPI--KRVAVGNPEIADYIILNPTELYLLGKKTGATNLIVWDQNGNS 94 Query: 109 MLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + + + R++ ++ +R + +++I + +VL G V ++ A L + + Sbjct: 95 A-STPLQVSRNVEPIKDLIRTVLPNETDIHIYSSGPALVLAGTVSNSLAAETAYRLVKGY 153 Query: 168 L--------------SQSGRNQYANSSS-----------------------KKVMNLLNI 190 L + + YA ++S V+NLL + Sbjct: 154 LGGDVPADNPEKTLTNTKPADSYAGTASLSGIVKSASLVAGGPTGAEGSGMSGVVNLLKV 213 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 QV L+V IAEV + ++ +GF+ + I S G F ++ E + +K Sbjct: 214 RDAQQVRLEVHIAEVSKTFMQALGFEWAGRIGNVSGGLMTGFVSN-------ETINLLLK 266 Query: 249 GVLDRFSFETVLHALERAT--AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 D S + A I+ LAEPT+ A+SGQ F GG+ +Y ++ GA Sbjct: 267 ---DNTSHSQRIKAENECDNGWIKILAEPTIVAMSGQEGYFLVGGK-IYVPTITANGAVD 322 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPS 364 YGV L FTPTVL GRI L++ EVSEP G + +++ A TTV++ Sbjct: 323 YQERTYGVGLRFTPTVLDAGRISLKVAPEVSEPPTSAADGTGTLLAFKTSYASTTVQMNE 382 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G +V+ GLLKD I + + +PLL IP+LGALFR+++ E TE+ + P LV+ + Sbjct: 383 GQNLVIGGLLKDKITETLKAVPLLGDIPLLGALFRHTKIESENTELLVVVRPTLVE-ASD 441 Query: 425 RDLSRPDDHYSVEDDAKAFFFN 446 P D + + K FF+ Sbjct: 442 TPPELPTDRF-IPPTQKELFFD 462 >gi|238796996|ref|ZP_04640500.1| Type II/III secretion system protein [Yersinia mollaretii ATCC 43969] gi|238719256|gb|EEQ11068.1| Type II/III secretion system protein [Yersinia mollaretii ATCC 43969] Length = 340 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 106/320 (33%), Positives = 176/320 (55%), Gaps = 32/320 (10%) Query: 123 LEMTLRRFIA---DSNIRVEMVSDTVVLHGMVRTIQDSQR-AVELSETFLS---QSGRNQ 175 + T +R IA DS+I ++ + D+ +L G V + ++ A + E S +SG+ Q Sbjct: 6 INATNKRIIAEYPDSHIEIDKIGDSYILTGEVESEEEKDTIATLVGEAIGSKKEESGKGQ 65 Query: 176 YANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 Y N+ ++N + + +QV +K+TIAEV +D + +G S G + G SF Sbjct: 66 YFNTPYYSNIINKIKLPQSNQVNVKLTIAEVTKDFSENVGVDWSTAGDAVG---SF---- 118 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +F+ F+ KG+ T++HA+ + R LAEP L+ +SG+SASF GG+ Sbjct: 119 --QFIR----FNAKGI------STLVHAINDDSIARILAEPNLSVLSGESASFLVGGE-- 164 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGD-MPSY 351 +S++ + +V+ ++G+ L+ V RI + I EVS + GD +PS Sbjct: 165 IPIISTTENSRTVSYKEFGIKLNIGAKVNEKKRIRIHINEEVSSIGKTFNIEGGDSIPSL 224 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R RKA+TT+EL G + +L GL+ ++ + IPL+ IPILGALFRN++ + +TE+ Sbjct: 225 RTRKAETTLELGDGESFILGGLISHTERESLKKIPLIGDIPILGALFRNAQTEQNQTELV 284 Query: 412 IAATPFLVKPVAMRDLSRPD 431 + AT LVK V+ +++ PD Sbjct: 285 VIATVNLVKSVSKKEVELPD 304 >gi|328470518|gb|EGF41429.1| rough colony protein RcpA [Vibrio parahaemolyticus 10329] Length = 447 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 124/409 (30%), Positives = 202/409 (49%), Gaps = 38/409 (9%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + G+ +S+ + V ++ V V+D AD V + + ++G G ++I Sbjct: 21 VSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGKLVIYGIGRGATSIIAYD 80 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE- 162 G ++ N ++++ + + L+ T+ D +I++ + + +V+ G+V + + + Sbjct: 81 RAGNEIYNAEVVVNKSLRLLKQTIIARYPDEDIKLTNIGEQIVIDGVVSSEEIKDKVYRH 140 Query: 163 LSETFLSQSGRNQY----ANSSS------------KKVMNLLNIAGEDQVTLKVTIAEVR 206 + E RN + AN S + ++N L + DQ+ +K+T+AEV Sbjct: 141 VGEMLKKSKQRNTFELSGANGESVDPLDYTATYVFEDIINNLKVLTTDQINVKLTVAEVS 200 Query: 207 RDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 L ++G ++ T G S G + G+FV++ DF+ + ++ V+ A Sbjct: 201 SSFLTELGVSYAETNGKSIGGA--------GQFVNKILDFTAEDIV------AVISASGN 246 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + + LAEP L+ ISG+SASF GG+ + TV + G SVT +YGV L V Sbjct: 247 DSIGQVLAEPNLSVISGESASFLVGGE-IPITVRDNDG-ISVTYKEYGVKLSMVAKVTDS 304 Query: 326 GRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 I L + EVS + GVN+G +PS R RKA TTV+L G + VLAGLL + Q+ Sbjct: 305 ENIRLSLLPEVSSIDKTNGVNSGLVSVPSLRTRKAQTTVQLKDGQSFVLAGLLTSEEQES 364 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP L IPILGALF + R +TE+ I AT LV PV D+ P Sbjct: 365 LAKIPYLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKETDIKLP 413 >gi|238762407|ref|ZP_04623378.1| Type II/III secretion system protein [Yersinia kristensenii ATCC 33638] gi|238699392|gb|EEP92138.1| Type II/III secretion system protein [Yersinia kristensenii ATCC 33638] Length = 379 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 104/358 (29%), Positives = 184/358 (51%), Gaps = 31/358 (8%) Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 ++ ++ K G A IL + + + +L+ I ++ +S+I + + + Sbjct: 5 SIIVYAKQEGTAEFILFNQNNQPIKKSAVLVNNTITAANKRIQIEYPESDIEINKIGTSY 64 Query: 146 VLHGMVRTIQDSQRAVEL-SETFLSQSG---RNQYANSSSKK-VMNLLNIAGEDQVTLKV 200 +L GM + + V + E S+ +QY N+ ++N + + G +QV +K+ Sbjct: 65 ILTGMAESEEAKDTIVSIIGEAIGSKKTIDTDSQYLNTPEYYGIINKIKLMGTNQVNVKL 124 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF----VSEGGDFSVKGVLDRFSF 256 TIAEV +D + IG S G DF G F ++ +FS +G+ Sbjct: 125 TIAEVTKDFSENIGVDWSTIG-----------DFSGSFQLVKLNSLNNFSARGI------ 167 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 ++HA+ + R LAEP L+ +SG+SASF GG+ V+++ +T +T ++G+ L Sbjct: 168 SALVHAINDDSIARVLAEPNLSVLSGESASFLVGGE--IPMVNTTQNSTVITYKEFGIKL 225 Query: 317 HFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGL 373 + V RI + + EVS + V ++ G+ PS+R RKA TT+EL G + +L GL Sbjct: 226 NIGAKVNEKKRIRIMLDEEVSSIDKVFNIDGGNAYPSFRTRKAATTLELGDGESFILGGL 285 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + + ++ + IP + IPILGA FRN+ + +TE+ + AT LV+PV+ R++ P+ Sbjct: 286 ISNSERESLKKIPFIGDIPILGAFFRNAETRKNQTELVVVATVNLVRPVSEREVELPN 343 >gi|28900576|ref|NP_800231.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633] gi|153836379|ref|ZP_01989046.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810] gi|260877521|ref|ZP_05889876.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034] gi|260901740|ref|ZP_05910135.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037] gi|308095456|ref|ZP_05906034.2| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466] gi|308125917|ref|ZP_05777993.2| rough colony protein RcpA [Vibrio parahaemolyticus K5030] gi|28808956|dbj|BAC62064.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633] gi|149750281|gb|EDM61026.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810] gi|308087133|gb|EFO36828.1| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466] gi|308090527|gb|EFO40222.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034] gi|308108872|gb|EFO46412.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037] gi|308114419|gb|EFO51959.1| rough colony protein RcpA [Vibrio parahaemolyticus K5030] Length = 447 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 124/409 (30%), Positives = 202/409 (49%), Gaps = 38/409 (9%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + G+ +S+ + V ++ V V+D AD V + + ++G G ++I Sbjct: 21 VSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGKLVIYGIGRGATSIIAYD 80 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE- 162 G ++ N ++++ + + L+ T+ D +I++ + + +V+ G+V + + + Sbjct: 81 RAGNEIYNAEVVVNKSLRLLKQTIIARYPDEDIKLTNIGEQIVIDGVVSSEEIKDKVYRH 140 Query: 163 LSETFLSQSGRNQY----ANSSS------------KKVMNLLNIAGEDQVTLKVTIAEVR 206 + E RN + AN S + ++N L + DQ+ +K+T+AEV Sbjct: 141 VGEMLKKSKQRNTFELSGANGESVDPLDYTATYVFEDIINNLKVLTTDQINVKLTVAEVS 200 Query: 207 RDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 L ++G ++ T G S G + G+FV++ DF+ + ++ V+ A Sbjct: 201 SSFLTELGVSYAETNGKSIGGA--------GQFVNKILDFTAEDIV------AVISASGN 246 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + + LAEP L+ ISG+SASF GG+ + TV + G SVT +YGV L V Sbjct: 247 DSIGQVLAEPNLSVISGESASFLVGGE-IPITVRDNDG-ISVTYKEYGVKLSMVAKVTDS 304 Query: 326 GRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 I L + EVS + GVN+G +PS R RKA TTV+L G + VLAGLL + Q+ Sbjct: 305 ENIRLSLLPEVSSIDKTNGVNSGLVSVPSLRTRKAQTTVQLKDGQSFVLAGLLTSEEQES 364 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP L IPILGALF + R +TE+ I AT LV PV D+ P Sbjct: 365 LAKIPYLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKETDIKLP 413 >gi|149176581|ref|ZP_01855194.1| putative outer membrane channel for pilus assembly CpaC [Planctomyces maris DSM 8797] gi|148844694|gb|EDL59044.1| putative outer membrane channel for pilus assembly CpaC [Planctomyces maris DSM 8797] Length = 590 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 115/384 (29%), Positives = 175/384 (45%), Gaps = 34/384 (8%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 IL+ P ++ V DPT V +P + + G +++ +GK + L+ + Sbjct: 63 ILKFPGKIKRVDGFDPTVLSVSALTPNELRIQALVPGVTTLVITDENGK-VYTLETFVSG 121 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D HL+ LR S++ V D+VVL G V + VE++E F Sbjct: 122 DARHLQAYLRELFPTSSVTAIKVQDSVVLRGWVTEPEAITEMVEIAEQFFPNG------- 174 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF------QHSITGSSSG---PSKS 229 V+N + +AG QV LKV I EV+R ++Q+G Q S+ G P Sbjct: 175 -----VLNQMKLAGVQQVLLKVKIMEVQRSKIRQLGVNWLFLNQSGYAYSTPGTLVPITG 229 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFS-------FETVLHALERATAIRTLAEPTLTAISG 282 FGG + G F F+ + AL++ ++ LAEP L SG Sbjct: 230 INVPFGGPPALTASQNLISGTSLGFGLVDGSSIFQAFIEALKKEALLKILAEPELVTTSG 289 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 + A+ SGG+ V S G ++ ++GV + P VL GR+ L +Q EVSE Sbjct: 290 RPANLLSGGEFPI-LVPQSLGTVTIEWREFGVRMEAVPIVLGNGRLRLEVQPEVSERDFS 348 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + V +P VR+A+T VE+ G T+V+AGL+ P L ++P++GA F Sbjct: 349 NAVQVAGTTVPGLTVRRANTAVEMNFGETMVIAGLISSRKTAETSKTPFLGELPVVGAAF 408 Query: 399 RNSRFNREETEIFIAATPFLVKPV 422 R R+ ETE+ I TP LV P+ Sbjct: 409 RRVRYTEGETELVIMVTPELVSPL 432 >gi|78186671|ref|YP_374714.1| type II secretion system protein [Chlorobium luteolum DSM 273] gi|78166573|gb|ABB23671.1| type II secretion system protein [Chlorobium luteolum DSM 273] Length = 486 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 121/423 (28%), Positives = 205/423 (48%), Gaps = 59/423 (13%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++ +G ++V ++P V V V DP AD ++ +P +YL GK G N+ + GK Sbjct: 38 RVPVGESRV--YRLPQPVTRVAVGDPEVADYIMLNPSEIYLLGKKTGSTNLTVWDRKGK- 94 Query: 109 MLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL---- 163 + + + + R++A ++ LR + ++ I++ +VL G + A L Sbjct: 95 VSSRSLRVSRNVAPIQELLRVVLPGETGIQLYASGHALVLSGSASDAMAADTAYRLVIAY 154 Query: 164 ---------SETFL--------------SQSGRNQYANSS-----------------SKK 183 E+ L SG + A ++ + + Sbjct: 155 SGGTVPALNPESALLAGSAGASGSVGAPGISGIHDSAPAAPSALPGAAASRSPAARDTPR 214 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGP-SKSFAADFGGKFVSE 241 V+NLL I QV L+V IAEV R ++ +G + GS+ G F ++ + + Sbjct: 215 VVNLLKIRDPQQVRLEVRIAEVSRSHIESLGIGWTQGRGSTQGSLMTGFVSNATLDLLLK 274 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G +R + + A ++ ++ LAEPT+ A+SG+ F GG+ +Y + Sbjct: 275 TGGMPGSTEGNRLTVD----AEQKKGLVKILAEPTIVAMSGEEGYFLVGGK-VYTPTLGT 329 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAG---DMPSYRVRKAD 357 G+ YGV L TPTVL GRI L++ EVSEP+ V AG +P++++ A Sbjct: 330 NGSVDYVERTYGVGLRCTPTVLDSGRISLKVAPEVSEPLKEAVTAGTSTSLPAFKLSYAS 389 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTV++ G +V+ GLL+D++ ++K +PLLS IP+LG+LFR++ N+E TE+ + P Sbjct: 390 TTVQMQEGENLVIGGLLRDNLTEVKRSVPLLSSIPVLGSLFRHTEMNKETTELMVIVRPT 449 Query: 418 LVK 420 LVK Sbjct: 450 LVK 452 >gi|260775653|ref|ZP_05884549.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] gi|260608069|gb|EEX34238.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] Length = 442 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 116/384 (30%), Positives = 190/384 (49%), Gaps = 36/384 (9%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 ++ V VS+P AD V + ++ K+ G++++I+ G +L+ I + + ++ Sbjct: 42 EIGTVFVSNPAVADYQVIDKHKVVIYSKSTGKSSLIVFDQSGNTILSRRIQVNKSADSIQ 101 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYANSSSKK 183 LR ++ + V + VVL G V + Q + + + E + R ++ + + Sbjct: 102 RYLRNHYPNAQVNAYYVGEQVVLSGTVSSEQVKDEIYIVVGEMLEKPANRQKFELETEDE 161 Query: 184 --------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 V+N + + QV +KV+IAEV + L+QIG + G G Sbjct: 162 SYEMKFMERREYDGVVNNIEVVVTKQVNVKVSIAEVSQKALEQIGVSYFSKGQVPG---- 217 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G FV+ FS +L +++A++ + R LAEP L+ SG+SASF Sbjct: 218 -----SGVFVNAINAFSADDIL------MMINAIDNESVGRVLAEPNLSVTSGESASFLV 266 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD 347 GG+ V++ G +SV+ ++GV L V +I L + EVS + + D Sbjct: 267 GGE--LPVVTTIDGGSSVSYKEFGVRLELMAKVKRDNKITLSLVPEVSSLDSQYENDTYD 324 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P+ + R+A TTVEL G + VL GLL +D++ L + IPL+ IPILG LFRN+ R Sbjct: 325 LPALKTRRARTTVELGDGQSFVLGGLLSSEDMESLSK-IPLIGDIPILGTLFRNAETERN 383 Query: 407 ETEIFIAATPFLVKPVAMRDLSRP 430 +TE+ I AT LVKPV +S P Sbjct: 384 KTELIIVATVNLVKPVETSTISLP 407 >gi|148259497|ref|YP_001233624.1| type II and III secretion system protein [Acidiphilium cryptum JF-5] gi|146401178|gb|ABQ29705.1| type II and III secretion system protein [Acidiphilium cryptum JF-5] Length = 491 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 133/439 (30%), Positives = 198/439 (45%), Gaps = 40/439 (9%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A A + ++ +G I G ++I L+ +V V+DP V S T+++FG Sbjct: 50 ARHATMRPAEAARARGLTIEQGSGRLITLKG--SAANVFVADPGVVAVRPASAHTLFVFG 107 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDI---AHLEMTLRRFIADSNIRVEMVSDTVVLH 148 G V + G + L + + A + R + + + ++ VV+ Sbjct: 108 TAPGFTTVAVTDAQGHAVATLHVAVTPKTYPAAAIRAGATRSAPGARLSISSAANGVVVR 167 Query: 149 GMVRT-IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V T +QD Q + Q+ + KV+N + QV LKV IA++ R Sbjct: 168 GNVPTPVQDYQ--------IMQQA---HLIAGTGAKVVNQTEVRLPQQVALKVRIAQMSR 216 Query: 208 DILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFE 257 I +Q+G +Q + G S G F F V G G ++ + + + Sbjct: 217 TITQQLGINWQSAGNGISVG---KFLFGFSALDVLNGSSPATPAAGSYNAGLSVGGGAID 273 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 +VL AL LAEPTLTA+SGQSASF GG V G +V +GV L Sbjct: 274 SVLDALNSDNLAHILAEPTLTALSGQSASFIDGGSFPVP-VPGQNGQVTVQYKKFGVQLK 332 Query: 318 FTPTVLSPGRIGLRIQTEVSEPV------IGVNAGDM--PSYRVRKADTTVELPSGGTIV 369 F P VL G I L +Q VS P I V + PS + A TTV + SG T+ Sbjct: 333 FRPVVLDNGSIILHVQPTVSSPTTQNAFQIAVAGTSIVVPSLSTQSASTTVVIGSGQTLA 392 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLS 428 +AGLL + Q + +P L +P+LGA FR+ +NR+E E+ I TP+LVKPV L Sbjct: 393 IAGLLSNSSNQTDKSVPGLGDMPVLGAAFRDDNYNRQEQELVILVTPYLVKPVNNAGQLM 452 Query: 429 RPDDHYSVEDDAKAFFFNR 447 PD+ +S + + +R Sbjct: 453 TPDEGWSPPNQIQRIVLHR 471 >gi|302343419|ref|YP_003807948.1| type II and III secretion system protein [Desulfarculus baarsii DSM 2075] gi|301640032|gb|ADK85354.1| type II and III secretion system protein [Desulfarculus baarsii DSM 2075] Length = 466 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 110/385 (28%), Positives = 178/385 (46%), Gaps = 40/385 (10%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++ +P ++ V V+D T ADV+V +PR +Y+ G+ G N+ + + + + + R Sbjct: 42 LVDLPAPLKRVSVADETVADVLVINPRQIYVNGRKPGNTNITVWDRAERVIAAYAVGVGR 101 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ R + I V + +VL G V + ++A ++ F Sbjct: 102 DYTRLKAAFARVLPGEAIEVHELEGALVLAGSVSSESAREKAESIARLF----------- 150 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----------------FQHSITG 221 ++V NLL + + QV LK+ AEV R K++ F ++TG Sbjct: 151 -EKERVSNLLEVVDQKQVLLKLRFAEVNRQAAKRMNVNLGYWDPARPGNIFFTFLDNMTG 209 Query: 222 SSSGPSKSFAADFG-GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 S + +F V G + G + L L++ + LAEP L + Sbjct: 210 PPSIDYSKGSIEFDLSANVGAWGGLNDSGR----QYMAFLDILKQNGLAKILAEPNLVCV 265 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-- 338 SG+ A+F +GG+ + T++ YGV L F P VL G+I L ++ EVSE Sbjct: 266 SGKKANFLAGGE--FPIPVPGRDYTAIVFKKYGVQLTFLPKVLPNGKISLEVEPEVSELD 323 Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 P + + +P R+A T +EL G +AGLLK D+ + P L +PILGA Sbjct: 324 YSPGVVTDGFVVPGLTTRRASTQLELGDGQGFAIAGLLKQDVTRSVSKWPFLGDLPILGA 383 Query: 397 LFRNSRFNREETEIFIAATPFLVKP 421 LFR+S++ ETE+ I TP +V+P Sbjct: 384 LFRSSQYRNRETELLIVVTPHIVRP 408 >gi|32473554|ref|NP_866548.1| outer membrane channel for pilus assembly CpaC [Rhodopirellula baltica SH 1] gi|32398234|emb|CAD78329.1| putative outer membrane channel for pilus assembly CpaC [Rhodopirellula baltica SH 1] Length = 589 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 109/377 (28%), Positives = 179/377 (47%), Gaps = 34/377 (9%) Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 +FGK G + L + K + +D+ + D +E L + +++RV + ++ ++ Sbjct: 99 VFGKTPGTTQINLWDTEDK-LYTIDVTVVADAREVEGILNSQLPLASLRVTPIGESAIIS 157 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G V ++ D +AV ++E F + V+N + + G QV L I EV R Sbjct: 158 GYVTSVDDVDKAVAITEQFYT-------------TVINNIQVVGIQQVLLHTKIMEVSRT 204 Query: 209 ILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGGDFSVKGVLD---RFS----FE 257 L+++G +I + +GPS D G V F + D RF+ FE Sbjct: 205 KLRELGVDLAILDDNFTLLNGPSGVL--DVGAGIVEGDAGFGPIPLGDTNLRFNVNGNFE 262 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 T+++AL + LAEPT+ A G+ A FT GG+ + V G +T DYG + Sbjct: 263 TLINALHEQRLTKLLAEPTVVATHGRPARFTVGGR-IPTIVPGQNGQVQITYEDYGTSID 321 Query: 318 FTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 F P V+ PGRI L ++ EVSEP + VN ++ ++ R +T VE+ +G T LAGL Sbjct: 322 FLPFVVGPGRIRLEVRPEVSEPDPSRAVTVNGTNVTAFTTRYVETAVEMQAGQTFALAGL 381 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR--PD 431 L+ + P +P +G LFR + R E E+ I TP LV+ + ++ R P Sbjct: 382 LQSRTESTTSRTPFFGSLPYVGTLFRKMQERRNEIELLILVTPELVEAMDPHEVPRGGPG 441 Query: 432 DHYSVEDDAKAFFFNRV 448 + DD + + + + Sbjct: 442 MNSHSPDDKEFYLYGHI 458 >gi|319782173|ref|YP_004141649.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168061|gb|ADV11599.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 481 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 119/425 (28%), Positives = 202/425 (47%), Gaps = 31/425 (7%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 DV +I + +++ + +QV ++ D++V D AD + RT+Y+ GK G V Sbjct: 34 DVSTPAVHRIFLPMSQSVTIQVSANLGDIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVN 93 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L D + + L I + D++ + +R+ S I V V+ V L G V+ Sbjct: 94 LFSTDKRSLGALQIEVGVDVSDMAQAIRQVAPKSRIEVGSVNGRVRLGGHVKDGATLAAI 153 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---H 217 + +++ QY + V+N + + QV L+V + E +R+ + +G Sbjct: 154 MAVAQ---------QYGPDA---VINSVIVDDSQQVNLEVRVLEAKRNTGRDLGVSIKSR 201 Query: 218 SITGSSSGPSKSFAADFGGKFVSEG-------------GDFSVKGVLDRFSFETVLHALE 264 + G++ + A D G + G G + + + ++ ALE Sbjct: 202 NGDGTTRTGTGVAAVDEDGVVLGPGGLLSGLLSNSAPFGALITRVIDSNIKVDLIIEALE 261 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 A+RTLA P LT +SG+ ASF +GG+ +T+ G S+ +GV L FTP VL Sbjct: 262 SKGAVRTLANPNLTTLSGEQASFNAGGEVPIRTLDKD-GEISIVYKQFGVNLLFTPVVLD 320 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G+I + + EVS+ AGD P + RK T VEL G + + GLL +L++ Sbjct: 321 DGKIHMNLAPEVSDLTGFTTAGD-PIFTNRKLATVVELRDGQSFAVGGLLSSKTTKLQDQ 379 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAF 443 +P L ++P++G LFR+S +EETE+ + TP +V+PV L+ P D +D + F Sbjct: 380 VPWLGQVPVIGTLFRSSSNQKEETELVVIVTPHIVRPVKPGEQLATPFDKTRPANDPEFF 439 Query: 444 FFNRV 448 ++ Sbjct: 440 VLGQL 444 >gi|220922532|ref|YP_002497834.1| type II and III secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947139|gb|ACL57531.1| type II and III secretion system protein [Methylobacterium nodulans ORS 2060] Length = 479 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 133/435 (30%), Positives = 201/435 (46%), Gaps = 52/435 (11%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++ + +NK ++V D+L+ A+V+ S +T+Y+ GK VG NV L+ + K Sbjct: 16 RVRVPVNKSQTMRVVAPFSDILIGASKIAEVIPLSDQTLYILGKEVGTTNVSLVDANKKV 75 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D ++ + +R D VL G + RAV Sbjct: 76 IGVVDVEVGLDAGNIGAKVLGGSGARGVRFTTEGDKAVLTGTAEDAVAADRAVA------ 129 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPS 227 +N + VMN+ + QV LKV E+ R + +G + T S +G S Sbjct: 130 ------LASNLAPGGVMNMTTVRSTQQVMLKVRFIEIDRTAGRDLGVRWEGTNRSVAGRS 183 Query: 228 KSFAADFGGKFVSEGGDF---------SVKGV---------LDRFSFETV---------- 259 + AA + GG+ +V G +F+ + Sbjct: 184 GTVAATPEALTTAPGGNGIGLLSNAIPAVAGAALSTVAAPQFGQFAARLINSNSAKVDLF 243 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGV 314 + ALE R LAEP L A SGQ A F +GG++ T SSS GA V T ++GV Sbjct: 244 ISALETQGLARRLAEPNLVASSGQPAEFLAGGEYPIPTASSS-GALGVPTITVTFKEFGV 302 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVL 370 L FTPTVLS G I L+++ EVSE P I VN G +P R+A T +E+ G + + Sbjct: 303 RLTFTPTVLSNGLINLQLEPEVSEIDPAISVNTGLVTVPGLSKRRARTNIEMRDGQSFAI 362 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSR 429 AGLL+ ++ E +P L IP+LGALF + F + +TE+ + TP LVKP + L+ Sbjct: 363 AGLLQAVNEKNLEQLPWLGSIPVLGALFSSKEFRQRDTELVVIVTPHLVKPSKPGQPLAT 422 Query: 430 PDDHYSVEDDAKAFF 444 P D +DA F Sbjct: 423 PLDTRMPTNDADYFL 437 >gi|312883754|ref|ZP_07743473.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368503|gb|EFP96036.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122] Length = 460 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 120/410 (29%), Positives = 200/410 (48%), Gaps = 44/410 (10%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + + + +N+ ++ + D + + +S+ AD + + +FG G A + ++ + Sbjct: 25 EPLEVNINEAKMINLSQDAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITILNAQER 84 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + N I + D L+ + ++++ E + + L G V T + V +++ + Sbjct: 85 VIYNNKIRVVHDTKELDSLIAAQFPEASVHSESLGGKLWLKGNVPTPVMAHSIVSVAKGY 144 Query: 168 LS---------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 LS S + N + +++N L + QV ++V IAEV R++ + Sbjct: 145 LSPVTANAQSEKGSTSPDSSTHSRGNENEDELINQLVVTMPTQVNIRVRIAEVSRNVSNK 204 Query: 213 IGFQHSITGSSSGPSKSF----AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 +G + G G SF A D VS G ++ G++D AL Sbjct: 205 LGIKWGSVGEGIG---SFLYTKAWD-----VSSWGKPTLSGLVD---------ALASDGT 247 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + LAEP LTA+SG+ ASF GG+ ++ T +V +GV L+FTP VL P RI Sbjct: 248 MSILAEPNLTAMSGEEASFLVGGEIPLPLINGDTA--TVEYKPFGVNLNFTPVVLGPDRI 305 Query: 329 GLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKE 383 LR+ EVS + +N PS+ R+A TT+EL SG + L GLL+ +I QL++ Sbjct: 306 SLRVSPEVSSVSVSNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQK 365 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 +P IPILG LFR++ + R+ETE+ I AT +LV+PV L P D+ Sbjct: 366 -LPGAGDIPILGGLFRSNEYQRKETELIIIATAYLVEPVRNDTLPLPTDN 414 >gi|90412176|ref|ZP_01220182.1| hypothetical Flp pilus assembly protein [Photobacterium profundum 3TCK] gi|90326900|gb|EAS43285.1| hypothetical Flp pilus assembly protein [Photobacterium profundum 3TCK] Length = 461 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 119/404 (29%), Positives = 197/404 (48%), Gaps = 47/404 (11%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + LN L+ ++ V VS P D V R + +F +GQA VI+ G D + +L+ Sbjct: 34 VTLNDANNLEFSQEIGTVFVSQPDILDYKVIDSRKLVIFSNKIGQAKVIVYGKDNQVLLS 93 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 ++ +++ + L+ + D +I V V + V + G V + + T LS+ Sbjct: 94 QRYHVDINLSQVRRQLKLYYPDLSISVTSVGEQVAIRGTVNNEKQRDDIYRMVATLLSKK 153 Query: 172 GRNQY----------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 +Y N + + ++ L +A QV +K+++A+V ++ Sbjct: 154 EIERYNEAEKLKFVESGFEEANWVRYSKNYTWEGIIEGLVVAQAQQVNVKISVAQVTKEF 213 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + IG S G S G SF +F + D S TV++A+ Sbjct: 214 NETIGVDWSTVGRSVGEF-SFL-EF------KANDLS-----------TVINAIGNDNIA 254 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 LAEP LT +SG+SASF GG+ + ++ +T+++ ++G+ L + VLS +I Sbjct: 255 EILAEPNLTVLSGESASFLVGGE--VPVIVTNDNSTNISFKEFGIKLELSAKVLSNKKIK 312 Query: 330 LRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIP 386 L++ EVS V A ++P R+A TT++L G + +L GL+ DDI+++ + IP Sbjct: 313 LQLAPEVSAVDGYVKAAGIEVPQLSSRRAMTTIQLADGDSFMLGGLMSSDDIEEISK-IP 371 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 LL IPILGA FR S R++TE+ I AT LVKPV+ D+ P Sbjct: 372 LLGDIPILGAAFRKSSTTRKKTELVIVATVNLVKPVSPTDVRLP 415 >gi|51597670|ref|YP_071861.1| outer membrane secretin family protein [Yersinia pseudotuberculosis IP 32953] gi|186896808|ref|YP_001873920.1| type II and III secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|51590952|emb|CAH22610.1| putative outer membrane secretin family protein [Yersinia pseudotuberculosis IP 32953] gi|186699834|gb|ACC90463.1| type II and III secretion system protein [Yersinia pseudotuberculosis PB1/+] Length = 439 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 109/390 (27%), Positives = 192/390 (49%), Gaps = 31/390 (7%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + IG + +I +Q +D V VS AD + ++ ++ K G A L + + + Sbjct: 37 LPIGGSHIIKMQEEIDT--VFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNKNHQPI 94 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT--IQDSQRAV--ELSE 165 +L+ I +R DS I + + ++ +L G T +D+ ++ E + Sbjct: 95 SKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIASIVGEATA 154 Query: 166 TFLSQSGRNQY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + Y +N + V+N + + +QV +K+TI E+ +D + IG + S++ Sbjct: 155 SKKEKEREESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNSIKSAA 214 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G + +F + +S T++HA+ + LAEP L+ +SG+ Sbjct: 215 GAFQFL--NFNAQSIS-----------------TLVHAINDEAIAKVLAEPNLSVLSGEY 255 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342 ASF GG+ VS++ SV ++G+ L+ V RI + + EVS + V Sbjct: 256 ASFLVGGE--IPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSIDKVFN 313 Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + GD PS R+RKA+TTVEL G + +L GL+ ++ + IP + +P+LGALFRN+ Sbjct: 314 LRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGALFRNA 373 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + R ++E+ + AT LVKPV+ R + PD Sbjct: 374 QTQRNQSELVVVATVNLVKPVSARQIELPD 403 >gi|283787693|ref|YP_003367558.1| tight adherence secretin RcpA [Citrobacter rodentium ICC168] gi|282951147|emb|CBG90838.1| putative tight adherence secretin RcpA [Citrobacter rodentium ICC168] Length = 482 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 117/414 (28%), Positives = 202/414 (48%), Gaps = 44/414 (10%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 D+ + +SDP AD V + + + ++ KN G ++I+ G + +L I ++ ++ + Sbjct: 51 DLDTIFISDPRVADYKVVNNKNIIVYAKNTGTTDLIVYGRNNTVLLKHSISVDPFLSDIN 110 Query: 125 MTLRRFIADSNIRV------EMVSDTVV--LHGMVRTIQDSQRAV-ELSETFLSQSGRNQ 175 + R ++I V +D VV ++G V T ++S A+ +L + ++ SG + Sbjct: 111 QRVARLFPGNSIEVTRFMGGATAADKVVYIINGSV-TDEESMDAIYQLVGSIVNSSGGEE 169 Query: 176 YANSSSKK-------------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 N S+ K V+N + + +QV + +T+ EV + +G Sbjct: 170 KDNKSANKRVVDSKINTDLIEKKKYANVINKMQLVASNQVNVHLTVVEVSKTFTDALGID 229 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSV---KGVLDRFSFETVLHALERATAIRTLA 273 S SS + GG ++ G F++ KG D + TV++A++ + R +A Sbjct: 230 WSSLTLSSIVN-------GGASINNPGTFNLLGFKGGFDAKNISTVINAIQNDSVARIMA 282 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 +P LT +SG++A F GG+ + +S T+VT +YG+ L V +I L + Sbjct: 283 QPNLTVLSGETADFLVGGEIPILSKNSDNEGTTVTYKEYGIKLSIAAKVEKKSKIKLSLS 342 Query: 334 TEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 E+S NA +P+ R++ +T+EL G + + GLL + + +P + I Sbjct: 343 NEISSISGAYSFNAYSIPTLTTRRSSSTIELADGDSFAIGGLLTEKDYETLGKVPFIGDI 402 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFF 444 PILGAL RNS RE+TE+ I AT LVKPVA RD+ P+ Y+ + K FF Sbjct: 403 PILGALARNSNTQREKTELVIFATVNLVKPVASNRDIVLPE--YNKTSNNKLFF 454 >gi|21673269|ref|NP_661334.1| type II secretion system protein [Chlorobium tepidum TLS] gi|21646357|gb|AAM71676.1| type II secretion system protein [Chlorobium tepidum TLS] Length = 445 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 131/413 (31%), Positives = 201/413 (48%), Gaps = 59/413 (14%) Query: 53 GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL 112 G ++V L VP + V V DP AD ++ SP +YL GK G N+I+ G +G Sbjct: 16 GESRVYRLAVPA--KRVAVGDPAIADFIMISPSELYLSGKKTGATNLIVWGKNG-NFTTA 72 Query: 113 DILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--- 168 +++ R++ ++ LR + + +I++ D +VL G V ++ A+ L +TFL Sbjct: 73 PLVVSRNVKPIQDLLRAVLPKEHDIQLYSSGDALVLAGSVSNALAAETAIRLVKTFLGGT 132 Query: 169 ------------------------SQSGRN------------QYANSSSKKVMNLLNIAG 192 S SG A+S +NLL I Sbjct: 133 VPDVTPEATLTKKSEAATGTSGGTSISGMTGVASAAGMSGAATVASSGIHGFINLLKIRD 192 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV L+V IAEV + ++ +GF + GS++G S FVS + +L Sbjct: 193 PQQVRLEVRIAEVSKSYMEALGFSWTQGVGSTAGSS------LMTGFVSN----ATLNLL 242 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + S + A + I+ LAEPT+ A+SGQ F GG+ +Y + GA Sbjct: 243 LKNSGNLKVEADSQKNWIKMLAEPTIVAMSGQEGYFLVGGK-IYTPTPTGNGAVDYQERT 301 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTVELPSGGT 367 YGV L FTPTVL GRI L++ EVSEP + ++P+++V A TTVE+ G Sbjct: 302 YGVGLRFTPTVLDAGRISLKVAPEVSEPDSQFQSAGSLYNLPAFKVSAASTTVEMNEGQN 361 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +V+ GLLKD + + E +PLL ++P+LGALFR++ + E+ E+ + P LVK Sbjct: 362 LVIGGLLKDKLTETIEAVPLLGQLPLLGALFRHTSMDSEKVEVIVIVRPTLVK 414 >gi|84385704|ref|ZP_00988735.1| rough colony protein RcpA [Vibrio splendidus 12B01] gi|84379684|gb|EAP96536.1| rough colony protein RcpA [Vibrio splendidus 12B01] Length = 447 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 121/392 (30%), Positives = 195/392 (49%), Gaps = 36/392 (9%) Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 + + ++ V V++ AD + + + ++G G ++I G ++ N ++++ + Sbjct: 37 INIKRNIDTVFVANSQIADYKIIANGKLVIYGIGRGATSIIAYDRAGNEIYNAEVVVNKS 96 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-RNQY-- 176 + L+ TL D NI++ + + VVL G+V + + L + +S R+ + Sbjct: 97 LRLLKQTLVARYPDENIKLTNIGEQVVLDGVVSSEEVKANVYRLVGEMMKKSKERHTFEL 156 Query: 177 --ANSSS------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 AN S + ++N L + +Q+ +K+T+AEV L ++G ++ Sbjct: 157 SGANGESVDALDFTATYVFQDIINNLKVLTTEQINVKLTVAEVSSSFLTELGVSYA---E 213 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S+G S A G FV++ DF+ + ++ V+ A R LAEP L+ ISG Sbjct: 214 SNGKSIGGA----GTFVNKILDFTAQDIV------AVISASGNDNIGRVLAEPNLSVISG 263 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPV 340 +SASF GG+ + V + G S+T +YGV L V I L + EVS + Sbjct: 264 ESASFLVGGE-IPIAVRDNDGV-SITYKEYGVKLSMVAKVTDSENIRLSLLPEVSSIDKA 321 Query: 341 IGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 GVN+G +PS R RKA TTV+L G + VLAGLL + Q+ IPLL IPILGALF Sbjct: 322 NGVNSGLISVPSLRTRKAQTTVQLKDGQSFVLAGLLTTEEQESLSRIPLLGDIPILGALF 381 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 + R +TE+ I AT LV PV ++ P Sbjct: 382 SKTNTERRKTELIIVATVNLVDPVKEDEIKLP 413 >gi|330862294|emb|CBX72455.1| hypothetical protein YEW_HH31870 [Yersinia enterocolitica W22703] Length = 271 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 141/250 (56%), Gaps = 18/250 (7%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 MN + + G +QV +K+TIAEV +D + IG S G+ SG + F + KF ++G Sbjct: 1 MNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSGSFQFFKLNGSNKFNAKG-- 58 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++HA+ + R LAEP L+ +SG+SASF GG+ V+++ + Sbjct: 59 -----------ISALVHAINDDSIARVLAEPNLSVLSGESASFLVGGE--LPLVNTTANS 105 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD-MPSYRVRKADTTVE 361 T +T +G+ L+ V + RI +++ EVS + V ++ GD PS+R RKA TT+E Sbjct: 106 TVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNIDGGDAYPSFRTRKAATTLE 165 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L G + +L GL+ ++ + IP + IPILGA FRN+ + +TE+ + AT LV+P Sbjct: 166 LGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFRNAETRKNQTELVVVATVNLVRP 225 Query: 422 VAMRDLSRPD 431 V+ +++ P+ Sbjct: 226 VSEKEVELPN 235 >gi|153833257|ref|ZP_01985924.1| general secretion pathway protein D [Vibrio harveyi HY01] gi|148870528|gb|EDL69443.1| general secretion pathway protein D [Vibrio harveyi HY01] Length = 456 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 116/407 (28%), Positives = 196/407 (48%), Gaps = 49/407 (12%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN + V + V +S+P AD V + T+ +F +GQ+ +I+ G D +L Sbjct: 34 SITLNDGQHISVKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQSRLIVYGIDEDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ D+ + L+ D+ + V+ V + V + G+V + + L T L + Sbjct: 94 SDRIIVDLDLTEIRRQLKFHFPDAKVTVQSVGEQVAVGGVVDSEETRDEIYRLVATLLGR 153 Query: 171 SG------------RNQYA------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ YA N + K ++ + +A QV +K+++A+V Sbjct: 154 EKTEKWDKTYKFEFKSDYAQYEEPEGMIFARNMTWKGIVERIQVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 K +G S GSS G +FV + D + T++ AL Sbjct: 214 ESFGKTVGVDWSSVGSSVG-----------EFVFDQ--------FDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 LAEP LT +SG+SASF GG+ + S+ +++ ++G+ L T VLS Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGE--VPVIVSTNNNVNISFKEFGIKLDLTAKVLSQD 312 Query: 327 RIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKE 383 +I +++ EVSE V A +P R+A TTVEL G + +L GL+ D++++++ Sbjct: 313 KIRMQLAPEVSEVESYVEAAGVKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + IPILGA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 373 -IPFVGDIPILGAAFRKATTERKRTELIIVATVNLVEPIKPKDVQLP 418 >gi|170022934|ref|YP_001719439.1| type II and III secretion system protein [Yersinia pseudotuberculosis YPIII] gi|169749468|gb|ACA66986.1| type II and III secretion system protein [Yersinia pseudotuberculosis YPIII] Length = 423 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 108/390 (27%), Positives = 189/390 (48%), Gaps = 31/390 (7%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + IG + +I +Q +D V VS AD + ++ ++ K G A L + + + Sbjct: 21 LPIGGSHIIKMQEEIDT--VFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNKNHQPI 78 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL---SET 166 +L+ I +R DS I + + ++ +L G T + + + Sbjct: 79 SKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIANIVGEATA 138 Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + R ++ SS + V+N + + +QV +K+TI E+ +D + IG + S++ Sbjct: 139 SKKEKEREEHYQSSPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNSIKSAA 198 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G + +F + +S T++HA+ + LAEP L+ +SG+ Sbjct: 199 GAFQFL--NFNAQSIS-----------------TLVHAINDEAIAKVLAEPNLSVLSGEY 239 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342 ASF GG+ VS++ SV ++G+ L+ V RI + + EVS + V Sbjct: 240 ASFLVGGE--IPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSIDKVFN 297 Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + GD PS R+RKA+TTVEL G + +L GL+ ++ + IP + +P+LGALFRN+ Sbjct: 298 LRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGALFRNA 357 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + R ++E+ + AT LVKPV+ R + PD Sbjct: 358 QTQRNQSELVVVATVNLVKPVSARQIELPD 387 >gi|153948843|ref|YP_001399594.1| type II/III secretion system protein [Yersinia pseudotuberculosis IP 31758] gi|152960338|gb|ABS47799.1| type II/III secretion system protein [Yersinia pseudotuberculosis IP 31758] Length = 439 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 105/382 (27%), Positives = 188/382 (49%), Gaps = 31/382 (8%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 I++ ++ V VS AD + ++ ++ K G A L + + + +L+ Sbjct: 44 IIKTQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNKNHQPISKTRVLVNN 103 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT--IQDSQRAVELSETFLSQSGRNQ- 175 I +R DS I + + ++ +L G T +D+ ++ + E S+ + + Sbjct: 104 TINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTITSI-IGEATASKKEKERE 162 Query: 176 ---YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 +N + V+N + + +QV +K+TI E+ +D + IG + S++G + Sbjct: 163 ESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNSIKSAAGAFQFL-- 220 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 +F + +S T++HA+ + LAEP L+ +SG+ ASF GG+ Sbjct: 221 NFNAQSIS-----------------TLVHAINDEAIAKVLAEPNLSVLSGEYASFLVGGE 263 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD-MP 349 VS++ SV ++G+ L+ V RI + + EVS + V + GD P Sbjct: 264 --IPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSIDKVFNLRGGDSYP 321 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 S R+RKA+TTVEL G + +L GL+ ++ + IP + +P+LGALFRN++ R ++E Sbjct: 322 SLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGALFRNAQTQRNQSE 381 Query: 410 IFIAATPFLVKPVAMRDLSRPD 431 + + AT LVKPV+ R + PD Sbjct: 382 LVVVATVNLVKPVSARQIELPD 403 >gi|312116090|ref|YP_004013686.1| type II and III secretion system protein [Rhodomicrobium vannielii ATCC 17100] gi|311221219|gb|ADP72587.1| type II and III secretion system protein [Rhodomicrobium vannielii ATCC 17100] Length = 519 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 114/408 (27%), Positives = 198/408 (48%), Gaps = 48/408 (11%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + LN+ ++V + LV++ ADVV + ++ + GK +G + L+ D + + Sbjct: 74 VRVVLNRSENVKVEYPFTEALVTNSDIADVVPLTNASINILGKKIGNTRLSLLDQDKRVI 133 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 +DI + D+ L +R + SN+RV V+ +++ G RA+ L+E F Sbjct: 134 GIVDIEVSHDVDMLRRVMRDNPSFSNLRVAAVNGRIMIAGQASDAVALSRALALAEQF-- 191 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI-------------------- 209 + +V N + +A QV L+V E R++ Sbjct: 192 ----------APGQVTNAMTVASPQQVMLEVRFIEASRNLARGVGVNVSGGGRYAGGTTG 241 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFG---GKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 ++ + + SIT S+G + + +D G + G + + + + + ALE Sbjct: 242 VETLKEKSSITSDSTGITTNLISDLAAGLGSNLVPFGAMTGRVIGGSAPIDVTIRALESQ 301 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 R LAEP L A+SG +ASF +GG+ + V+ + + +G+ L FTPTVL+ Sbjct: 302 GLARRLAEPNLVALSGDTASFLAGGEFPFP-VAGTNNTITTEFKKFGIGLAFTPTVLARR 360 Query: 327 RIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD----DI 378 +I L+I+ EVSE + + ++P VR+A TTVEL G + +AGL++ D Sbjct: 361 QINLKIEPEVSEIDYSAAVKIGNVEVPGLSVRRASTTVELRDGQSFAIAGLMQGFHNADT 420 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +QL P + +PILGAL R++ F ++ET++ I TP LV+P+ D Sbjct: 421 RQL----PWIGDVPILGALTRSTSFQKKETDLVIIVTPCLVQPMVPGD 464 >gi|156977409|ref|YP_001448315.1| Flp pilus assembly protein, secretin CapC [Vibrio harveyi ATCC BAA-1116] gi|156529003|gb|ABU74088.1| hypothetical protein VIBHAR_06196 [Vibrio harveyi ATCC BAA-1116] Length = 456 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 110/389 (28%), Positives = 188/389 (48%), Gaps = 49/389 (12%) Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 V +S+P AD V + T+ +F +GQA +I+ G D +L+ I+++ D+ + ++ Sbjct: 52 VFISNPDVADYKVINDTTLVVFANGIGQARLIVYGIDEDVLLSDRIIVDLDLTDVRRQIK 111 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG------------RNQY 176 D+ + V+ + + V + G V + + L T L + ++ Y Sbjct: 112 FNFPDAKVTVQSIGEQVAVSGFVDSEETRDEIYRLVATLLGREKIKKWDKADKFEFKSDY 171 Query: 177 A------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 A N S + ++ + +A QV +K+++A+V K +G S GSS Sbjct: 172 AQYEAPEGMIFARNMSWRGIVERIEVATTQQVNVKISVAQVTESFGKTVGVDWSSVGSSV 231 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G +FV + D + T++ AL LAEP LT +SG+S Sbjct: 232 G-----------EFVFDQ--------FDAANLSTLITALGNDQVAEVLAEPNLTVLSGES 272 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 ASF GG+ + S+ +++ ++G+ L T VLS +I +++ EVSE V Sbjct: 273 ASFLVGGE--VPVIISTNNNVNISFKEFGIKLDLTAKVLSKDKIRMQLAPEVSEVESYVE 330 Query: 345 AG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNS 401 A +P R+A TTVEL G + +L GL+ D++++++ IP + IPILGA FR + Sbjct: 331 AAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK-IPFVGDIPILGAAFRKA 389 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRP 430 R+ TE+ I AT LV+P+ +D+ P Sbjct: 390 MTERKRTELIIVATVNLVEPIKPKDVQLP 418 >gi|78186537|ref|YP_374580.1| type II secretion system protein [Chlorobium luteolum DSM 273] gi|78166439|gb|ABB23537.1| type II secretion system protein [Chlorobium luteolum DSM 273] Length = 461 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 122/448 (27%), Positives = 206/448 (45%), Gaps = 53/448 (11%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + +G ++V L+ P+ + V V +P AD ++ + +YL GK G N+IL G Sbjct: 25 VPVGESRVYRLEQPI--KRVAVGNPEVADYIMLNSSELYLLGKKTGATNLILWDQKGNCT 82 Query: 110 LNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 L + + R++ ++ L+ + +++I++ +VL G ++ A L + +L Sbjct: 83 STL-LQVSRNVYPIKKLLKTALPKETDIQIFASGPALVLAGSASNSLAAESAYRLVKAYL 141 Query: 169 ------------------------SQSGRNQ-------YANSSSKK------VMNLLNIA 191 S SG A S+S ++NLL + Sbjct: 142 GGTVPGVNPESSLSNSGSGSAAPASMSGTQNSSYAAPVIATSASTAPAGMSGLVNLLTVR 201 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV L+V IAEV + ++ +G G + G + + G FVS + Sbjct: 202 DTQQVRLEVRIAEVSKSYIETLGL-----GWTQGVGNTQGSLMTG-FVSNATLNLLLQTK 255 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + A + I+ LAEPT+ A+SGQ F GG+ +Y S+ GA Sbjct: 256 SNPGNRLDMDAERKEGLIKILAEPTMVAMSGQEGYFLVGGK-VYTPTLSTNGAVDYVERT 314 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGT 367 YGV L FTP VL GRI L++ EVSEP V +G +P ++ A +TV++ G Sbjct: 315 YGVGLRFTPVVLDSGRISLKVAPEVSEPLKEAVTAGTSGPLPGFKTSFASSTVQMREGEN 374 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +V+ GLL+D++ ++ +PLL+ IPILG+LFR++ + E TE+ + P L+K + + Sbjct: 375 LVIGGLLRDNLTEVVRAVPLLADIPILGSLFRHTEKSSETTELMVIIRPTLIK-ASDKAP 433 Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 P D + ++ F ++ G K Sbjct: 434 ELPTDRFVPPSSSELFIEGKLQSSRGSK 461 >gi|197335194|ref|YP_002155269.1| general secretion pathway protein D [Vibrio fischeri MJ11] gi|197316684|gb|ACH66131.1| general secretion pathway protein D [Vibrio fischeri MJ11] Length = 436 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 111/379 (29%), Positives = 180/379 (47%), Gaps = 33/379 (8%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 ++ V +S+P AD + + LFG+ VG + I G+++LN I++ R+ + +E Sbjct: 41 EIGSVFISNPKVADYKIIDKYKVVLFGREVGDSVFIAFDVQGRELLNKKIIVSRNYSGIE 100 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK- 183 ++ S+I + + V+ G V +D + E+ T L + A + Sbjct: 101 QQVKLRFPTSDIDIFAIGTNAVVSGTVLNEEDRDQIYEMVATLLFDDNADNNAQDDRTEL 160 Query: 184 ----------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 V+N + +A QV +K+TIAEV ++ G + G + Sbjct: 161 TYMDKLNFEGVVNQIEVARTKQVNVKLTIAEVSHSFMQDFGIKVGSNGQA---------- 210 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G FV + FS ++ +V+ A+ + + LAEP L+ ISG+ ASF GG+ Sbjct: 211 --GIFVDQLVHFSASDIV------SVITAVGTDSVGQVLAEPNLSVISGEDASFLVGGE- 261 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSY 351 V+ GAT+V ++GV L T V +I L + VS + + ++PS Sbjct: 262 -LPVVTVIDGATNVQYKEFGVKLDLTAKVERDDKIKLALAPSVSSLDTQYANDNYNLPSL 320 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R A TTVEL G + VL GLL + ++ IP + IPILGALFR++ R +TE+ Sbjct: 321 KTRSARTTVELGDGQSFVLGGLLNSEEKESLTRIPFVGDIPILGALFRHTGTERNKTELI 380 Query: 412 IAATPFLVKPVAMRDLSRP 430 I AT LV+PV + P Sbjct: 381 IVATVNLVQPVKANQIQLP 399 >gi|149188846|ref|ZP_01867136.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1] gi|148837266|gb|EDL54213.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1] Length = 453 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 108/394 (27%), Positives = 187/394 (47%), Gaps = 53/394 (13%) Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 + V VSDP D V + ++ +F K VGQA +++ G K + + I+ + D++ + Sbjct: 46 ITKVFVSDPDIVDYNVINENSIVIFSKAVGQARLMIYGESEKLLYSERIIADIDLSQVRR 105 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY--------- 176 + D+++++E V + V + G+V + ++ L T L + ++ Sbjct: 106 QVALLFPDTSVKIESVGNQVAVSGIVNSERERDDIYRLVATLLGREKLEKWDKVQKLKFQ 165 Query: 177 ---------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 N + ++ L +A QV +K+++A+V + +G S Sbjct: 166 NDNISIEEPESMIFERNMTWDGIIERLEVATVQQVNVKISVAQVTERFAETVGVDWS--- 222 Query: 222 SSSGPSKSFAADFGGKFVS--EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 SF A+ G E D + T++ AL + LAEP LT Sbjct: 223 -------SFGANVGQFLFQQFEAADLT-----------TLITALGNENVAQVLAEPNLTV 264 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 ISG+SASF GG+ + S+ ++T ++G+ L T VL+ +I +++ EVSE Sbjct: 265 ISGESASFLVGGE--VPVIVSTNNNVNITFKEFGIKLDLTAKVLTEEKIRMQLFPEVSEI 322 Query: 340 VIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGA 396 + A ++P R+A TT+EL G + VL GL+ D +++++ PL+ IP+LGA Sbjct: 323 ERYIRAAGIEVPQLATRRAMTTIELGDGDSFVLGGLMSSADFEEIQK-TPLIGDIPVLGA 381 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 FR S +R TE+ I AT LVKP+ +D+ P Sbjct: 382 AFRKSSTDRRRTELIIVATVNLVKPMKRKDIQLP 415 >gi|221213139|ref|ZP_03586115.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD1] gi|221167352|gb|EED99822.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD1] Length = 443 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 121/385 (31%), Positives = 179/385 (46%), Gaps = 50/385 (12%) Query: 66 VQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQANVILI--GHDGKQMLNLDILIERDI 120 +Q V V DP ADV++ + + K G NV+L G D + N++++ Sbjct: 43 LQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGATNVMLWERGRDEPTVWNVEVVDAAAH 102 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 A L+ DS RV T VL G ++ +RAV + G+N S Sbjct: 103 AVLD--------DSTPRVNTYGGTSVLRGTAASLDAHERAVAV--------GKNV---SG 143 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAAD 233 V++ +AG++ V + V + E R +LKQ+GF S S G +S+ Sbjct: 144 KGAVIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQSNGFSFGSFSPGGVQSYN-- 201 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHA-----------LERATAIRTLAEPTLTAISG 282 GG G G +F V++A LE R LAEPTL A+SG Sbjct: 202 -GGAGPGSAGYLPTLGAPVASAFNLVVNAAGRGIFADLSLLEANNLARVLAEPTLVALSG 260 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 QSASF +GG+ + G+T++ YGV L TPTVLSP RI L++ E S+ Sbjct: 261 QSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLSPQRIALKVAPESSQLDFV 319 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + ++ +P R+ADTTVEL G + V+ GL+ +PLL +PI+G F Sbjct: 320 NSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFF 379 Query: 399 RNSRFNREETEIFIAATPFLVKPVA 423 +N + + + E+ I TP LV P+A Sbjct: 380 KNLNYQQNDKELLIIVTPHLVAPIA 404 >gi|221197781|ref|ZP_03570827.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD2M] gi|221204661|ref|ZP_03577678.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD2] gi|221175518|gb|EEE07948.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD2] gi|221181713|gb|EEE14114.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD2M] Length = 443 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 121/385 (31%), Positives = 179/385 (46%), Gaps = 50/385 (12%) Query: 66 VQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQANVILI--GHDGKQMLNLDILIERDI 120 +Q V V DP ADV++ + + K G NV+L G D + N++++ Sbjct: 43 LQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGATNVMLWERGRDEPTVWNVEVVDAAAH 102 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 A L+ DS RV T VL G ++ +RAV + G+N S Sbjct: 103 AVLD--------DSTPRVNTYGGTSVLRGTAASLDAHERAVAV--------GKNV---SG 143 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAAD 233 V++ +AG++ V + V + E R +LKQ+GF S S G +S+ Sbjct: 144 KGTVIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQSNGFSFGSFSPGGVQSYN-- 201 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHA-----------LERATAIRTLAEPTLTAISG 282 GG G G +F V++A LE R LAEPTL A+SG Sbjct: 202 -GGAGPGSAGYLPTLGAPVASAFNLVVNAAGRGIFADLSLLEANNLARVLAEPTLVALSG 260 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 QSASF +GG+ + G+T++ YGV L TPTVLSP RI L++ E S+ Sbjct: 261 QSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLSPQRIALKVAPESSQLDFV 319 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + ++ +P R+ADTTVEL G + V+ GL+ +PLL +PI+G F Sbjct: 320 NSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFF 379 Query: 399 RNSRFNREETEIFIAATPFLVKPVA 423 +N + + + E+ I TP LV P+A Sbjct: 380 KNLNYQQNDKELLIIVTPHLVAPIA 404 >gi|187923645|ref|YP_001895287.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] gi|187714839|gb|ACD16063.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] Length = 468 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 118/403 (29%), Positives = 187/403 (46%), Gaps = 48/403 (11%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV---HSPRTMYLFGKNVGQA 97 D+ +G ++I++G +Q V + DP+ ADV++ + L GK G Sbjct: 55 DLTVGAQRQIAVGHT----------LQRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTT 104 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 N++L D L + + A + V+++ T ++ G T++ Sbjct: 105 NLMLWSRDRDAPLQYTVNVTTPAAA------SLLGADTPAVKVLGGTAIVSGTSATMEAH 158 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ- 216 QRAV +E L + G V + +A V + V + E R +LK++GF Sbjct: 159 QRAVVAAEGSLGKDG----------AVFDTSTVASRAVVQVDVRVVEFSRSVLKEVGFNF 208 Query: 217 ----HSITGSSSGPSK-SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL-------E 264 + T S PS S + G+ S G + + F + H L E Sbjct: 209 FKQNNGFTFGSFAPSALSSVSATAGQAPSLTGVTPISSAFNLI-FNSATHGLFANLSLLE 267 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 R LAEPTL A+SGQSASF +GG+ + V + G+TS+ YGV L TPTVLS Sbjct: 268 SNNLARVLAEPTLVALSGQSASFLAGGE-VPIPVPQALGSTSIEFKPYGVGLTLTPTVLS 326 Query: 325 PGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 P RI L++ E S+ + ++ +P++ R+ADTTVEL G + V+ GL+ + Sbjct: 327 PQRIALKVAPEASQLDFANAVTISGVSVPAFTTRRADTTVELGDGESFVIGGLIDRETAS 386 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +PLL +P++G F+ + + E E+ I TP LV P+A Sbjct: 387 NVSKVPLLGDLPVIGTFFKQLNYQQNEKELVIIVTPHLVSPLA 429 >gi|197106489|ref|YP_002131866.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium zucineum HLK1] gi|196479909|gb|ACG79437.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium zucineum HLK1] Length = 438 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 103/376 (27%), Positives = 177/376 (47%), Gaps = 26/376 (6%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 + I + +K + ++ ++VS P A V S R+ Y+ G G N+++ G G+ Sbjct: 38 RSIHVPRDKSLSFRLAQPAARIVVSQPEIAKVTATSDRSFYVQGLEFGSTNMLVYGPGGR 97 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + LDI + D L+ L + +RV + + ++L G V +A +++ + Sbjct: 98 LLEVLDIRVGYDAEGLQQDLAAAFPNEPLRVRNLGEALMLTGEVTDTGVQYKAEAIAQRY 157 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 + +++ +++ QV L+V + E R L+ IG + +I + Sbjct: 158 ------------APDGLISRVSVRASQQVVLEVRVLEATRSALQDIGVEGAIG------N 199 Query: 228 KSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 S+A FG + G + G + +L ALE +RTLA P L AI GQ Sbjct: 200 NSWAVAFGNGLIGASPAAGALGISGGWGDTRIDLMLTALEEKGVVRTLARPNLVAIPGQK 259 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340 A+F +GG++ Y V S+ YGV L FTP V G I L ++ EVS+ Sbjct: 260 ATFHAGGEYPYP-VPQRDDLISLEFRKYGVELTFTPVVQDNGLIRLDVEPEVSQLDFTNS 318 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + V +P VR+ TTVEL G ++ + GL + + +P + +P+LG+LFR+ Sbjct: 319 LRVQGFTVPGLIVRRTHTTVELKPGESLAIGGLFQREYTNALRQVPGIGDVPVLGSLFRS 378 Query: 401 SRFNREETEIFIAATP 416 +R+ + ETE+ + TP Sbjct: 379 ARWKKAETELVVIVTP 394 >gi|254506218|ref|ZP_05118362.1| general secretion pathway protein D [Vibrio parahaemolyticus 16] gi|219551036|gb|EED28017.1| general secretion pathway protein D [Vibrio parahaemolyticus 16] Length = 431 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 111/399 (27%), Positives = 196/399 (49%), Gaps = 34/399 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++G + + ++ V +SDP AD V + +FGK VG +++ + + + Sbjct: 12 MNLGEGEAKAINTKAEIASVFISDPQIADYQVVDKNKLVIFGKKVGTVSLLAFDDNSETI 71 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 ++ +++ + + H++ ++ D +I + + + VVL G V + + L L+ Sbjct: 72 ISRKLVVNQSLIHIQQQVQIRYPDVSISIYNLGEQVVLAGKVPSEKIRDEINILVGELLN 131 Query: 170 QS----------GRNQY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + G N Y K ++N + ++ QV +K++IAEV + L+Q G Sbjct: 132 KEYEDYKIEWDLGENTYEMEFMTRRHYKGIVNNIEVSTTKQVNVKLSIAEVSQSFLEQFG 191 Query: 215 FQHSITGSSSGPSKSFAADF-GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 ++ SS A+F GG FV + +FS ++ +V+ A+ + LA Sbjct: 192 VKYGTLDSS--------ANFMGGTFVDQLINFSAADIV------SVISAIGDDAVGQVLA 237 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 EP L+ ISG++ASF GG+ V+ G T+V ++G+ L VL +I L + Sbjct: 238 EPNLSVISGETASFLVGGE--IPVVTVVDGGTNVLFKEFGIRLEMMAKVLQDDKIKLSLM 295 Query: 334 TEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS + + +P+ + R+A TTVEL G + VL GLL + ++ +P + + Sbjct: 296 PEVSSLDTQYQNDRYSLPALKTRRARTTVELGDGQSFVLGGLLSTEDRESLSRVPFIGDV 355 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 PILGALFR++ R +TE+ I AT LVKPV + P Sbjct: 356 PILGALFRHTETVRNKTELVIVATVNLVKPVNPSQIQLP 394 >gi|218459699|ref|ZP_03499790.1| cpaC pilus assembly Q protein [Rhizobium etli Kim 5] Length = 409 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 121/390 (31%), Positives = 194/390 (49%), Gaps = 53/390 (13%) Query: 42 VEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 V +GK + +++ N+ + L D+++ DVV S R++++ GK +G N+ Sbjct: 42 VTLGKSVQHVTLPPNETLTLNTGQPFGDLVIGSADMIDVVPLSDRSLFVRGKKIGATNIS 101 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + G D + +DI + D + + +R + +RV +D + L G+VR + QR Sbjct: 102 VYGDDKSLLGVIDIRVASDFSEVASAIRSAAPSARVRVVNSNDRIRLVGVVRDGIELQRV 161 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 +E+++++ S + V+N L ++ QV L+V I E R + +G S Sbjct: 162 LEIAQSY------------SEQPVLNQLRVSDSQQVMLEVRIIEASRQTGRDLGIGWSGQ 209 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------------------RFSFET 258 GS+ G K+ + G V++ G+ + + +LD + + Sbjct: 210 GSN-GIGKATTSQ--GITVNDDGNLA-RTLLDPKGAATGMLPFGQLIAKVLQISGGNIDV 265 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVL 316 V++ALE+ +R LA+P L A+SG +ASF +GG+ L T + +T AT +GV L Sbjct: 266 VINALEQKGLVRRLAQPNLIAMSGSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRL 325 Query: 317 HFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 F P VL G I L I+ EVSE P I VN P + R A TTV L G + +AGLL Sbjct: 326 TFKPVVLDDGVINLEIEPEVSELDPAINVNGN--PGFISRAASTTVALRDGQSFAMAGLL 383 Query: 375 KD----DIQQLKEGIPLLSKIPILGALFRN 400 + DIQQL P L +IP+LGALFR+ Sbjct: 384 QSINAKDIQQL----PGLGQIPVLGALFRS 409 >gi|59711120|ref|YP_203896.1| general secretion pathway protein D [Vibrio fischeri ES114] gi|59479221|gb|AAW85008.1| general secretion pathway protein D [Vibrio fischeri ES114] Length = 436 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 110/379 (29%), Positives = 180/379 (47%), Gaps = 33/379 (8%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 ++ V +S+P AD + + LFG+ VG + I G+++LN I++ ++ + +E Sbjct: 41 EIGSVFISNPKVADYKIIDKYKVVLFGREVGDSVFIAFDVQGRELLNKKIIVSKNYSGIE 100 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK- 183 ++ S+I + + V+ G V +D + E+ T L + A + Sbjct: 101 QQVKLRFPTSDIDIFAIGTNAVVSGTVLNEEDRDQIYEMVATLLFDDNADNNAQDDRTEL 160 Query: 184 ----------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 V+N + +A QV +K+TIAEV ++ G + G + Sbjct: 161 TYMDKLNFEGVVNQIEVARTKQVNVKLTIAEVSHSFMQDFGIKVGSNGQA---------- 210 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G FV + FS ++ +V+ A+ + + LAEP L+ ISG+ ASF GG+ Sbjct: 211 --GIFVDQLVHFSASDIV------SVITAVGTDSVGQVLAEPNLSVISGEDASFLVGGE- 261 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSY 351 V+ GAT+V ++GV L T V +I L + VS + + ++PS Sbjct: 262 -LPVVTVIDGATNVQYKEFGVKLDLTAKVERDDKIKLALAPSVSSLDTQYANDNYNLPSL 320 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R A TTVEL G + VL GLL + ++ IP + IPILGALFR++ R +TE+ Sbjct: 321 KTRSARTTVELGDGQSFVLGGLLNSEEKESLTRIPFVGDIPILGALFRHTGTERNKTELI 380 Query: 412 IAATPFLVKPVAMRDLSRP 430 I AT LV+PV + P Sbjct: 381 IVATVNLVQPVKANQIQLP 399 >gi|260778162|ref|ZP_05887055.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] gi|260606175|gb|EEX32460.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] Length = 469 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 110/415 (26%), Positives = 201/415 (48%), Gaps = 34/415 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + +N+ ++++ + + +S+ AD + + +FG G A + ++ + + Sbjct: 27 LEVNINEAKMIRLSEKAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITVLNEQERVI 86 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + I + D L+ ++ D+++ E + + L G V T + V +++ +LS Sbjct: 87 YSNKIRVVHDTQELDELIKAQFPDASVNSESLGGKLWLKGSVPTPVMAHSIVNVAKGYLS 146 Query: 170 QSGRNQYANSS--------------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 Q +N++ +++N L + QV +++ IAEV R++ Sbjct: 147 PIVAPQESNNNDSSKSSNSSESNSENQQNSNGDELINQLVVTMPTQVNIRIRIAEVSRNV 206 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 ++G + GS + G ++ D S G + + ++ AL + Sbjct: 207 SNKLGIKW---GSLVTNGSTVENTVGSFLYNKPWDVSSWG---KPNLSALVDALASTGDM 260 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 LAEP LTA+SG+ A+F GG+ + T +V +GV L+F P VL P RI Sbjct: 261 SILAEPNLTAMSGEEANFLVGGEVPIPLIQGDTA--TVEYKPFGVNLNFKPVVLGPDRIS 318 Query: 330 LRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEG 384 L+++ EVS + +N +PS+ R+A TT+EL SG + L GLL+ +I+QL++ Sbjct: 319 LKVEPEVSSVSVDNQAVLNGNVLPSFTSRRASTTIELASGQSFALGGLLQSSEIEQLQK- 377 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 +P + IPILG LFR++ + R ETE+ I AT +LV+P +L P D + D Sbjct: 378 LPGMGDIPILGGLFRSNEYQRRETELIIIATAYLVEPTRSDNLPIPTDALIPQSD 432 >gi|320158383|ref|YP_004190761.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] gi|319933695|gb|ADV88558.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] Length = 441 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 112/386 (29%), Positives = 186/386 (48%), Gaps = 41/386 (10%) Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 + V V DP AD + + ++G G +VI+ G ++ N ++++ + + ++ Sbjct: 42 ISTVFVGDPEIADYKIIDETKVVVYGVGQGATSVIVYDRAGNELYNAEVVVNKSLRLVKQ 101 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMV----------RTIQDSQRAVELSETFLSQSGRNQ 175 TL D +I + V + VVL G+V RT+ + + +TF + Sbjct: 102 TLIARFPDESINITNVGEQVVLDGVVSSDEIKTQIYRTVGEMLKKNSTRDTFTLKDANGD 161 Query: 176 YANSSS-------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 +S ++N L + +Q+ +K+T+AEV L ++G +S +G + Sbjct: 162 EVDSLDYTATYIYDNIINNLKVLTTEQINVKLTVAEVSSSFLSELGVSYSDSGQA----- 216 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G+FV++ DF+ + ++ V+ A R LAEP L+ ISG++ASF Sbjct: 217 -------GRFVNKLLDFTAQDIV------AVITASGDDQIGRVLAEPNLSVISGETASFL 263 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVN 344 GG+ + + G T ++ +YGV L V I L + EVS E Sbjct: 264 VGGE-IPIAIRDEDGIT-ISYKEYGVKLSMVAKVTDSENIRLSLLPEVSSIDEENKTANG 321 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 ++P+ R RKA TTV+L G + VLAGLL + ++ IP+L IPILGALF +++ N Sbjct: 322 LINVPALRTRKAQTTVQLKDGQSFVLAGLLTSEERESLSKIPVLGDIPILGALFSHTKSN 381 Query: 405 REETEIFIAATPFLVKPVAMRDLSRP 430 + +TE+ I AT LV PV D+ P Sbjct: 382 QTKTELIIVATVNLVDPVKAEDIKLP 407 >gi|163801677|ref|ZP_02195575.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4] gi|159174594|gb|EDP59396.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4] Length = 456 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 111/407 (27%), Positives = 191/407 (46%), Gaps = 49/407 (12%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN + V + V +S+P AD V + T+ +F K VG + +++ G + +L Sbjct: 34 SITLNDGKHISVKQPIGKVFISNPDIADYKVINDTTLVVFAKGVGHSRLLVYGANEDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ D+ + L+ D+ + V+ V + V + G+V + + L L + Sbjct: 94 SDRIIVDLDLTQIRRQLKFHFPDAKVTVQSVGEQVAVSGVVDSEETRDAIYRLVANLLGR 153 Query: 171 SGRNQYANSSSKK------------------------VMNLLNIAGEDQVTLKVTIAEVR 206 ++ +SS + ++ + +A QV +K+++A+V Sbjct: 154 EKTEKWESSSKRSFKSDHGTFEEPESMIFARNMTWEGIIEQIQVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 K +G + GSS G F D D + T++ AL Sbjct: 214 ESFGKTVGVDWNSVGSSVG---GFVFD----------------QFDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 LAEP LT +SG+SASF GG+ + S T+++ ++G+ L VLS Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGE--VPVIISDANGTNISFKEFGIKLDLAAKVLSQD 312 Query: 327 RIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKE 383 +I +++ EVSE V A +P R+A TTVEL G + +L GL+ D++++++ Sbjct: 313 KIRMQLAPEVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + IPILGA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 373 -IPFIGDIPILGAAFRRATTERKRTELIIVATVNLVEPIKPKDVHLP 418 >gi|27365651|ref|NP_761179.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6] gi|27361799|gb|AAO10706.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6] Length = 462 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 111/430 (25%), Positives = 203/430 (47%), Gaps = 35/430 (8%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 K+I + + + ++ + +++ V + D T ADV S R+ +FG VG+ +++++G +G Sbjct: 23 AKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKTPSARSALVFGAKVGKTDLVIVGKEG 82 Query: 107 KQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + + + ++ ++ LE L I ++ V D++ + G V + + + + L Sbjct: 83 EAIAHYRLNVKNSGLSQLERHLETLYPSHRITLQSVGDSIAVAGTVASPEMAADILSLVN 142 Query: 166 TF----LSQSGRNQYANSSSKK-----------------VMNLLNIAGEDQVTLKVTIAE 204 F ++ R + N+ + + V+N L I QV + + + E Sbjct: 143 NFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIRMVE 202 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHAL 263 + + +++G I S P+ G +F + G D + ++ +F ++ AL Sbjct: 203 MAKSTSEELG----IRWQSVNPNWMLGVSPGNQFAT-GIDLTDPDNLIKESAFMGIIDAL 257 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + + LAEP LTA SG+ A F GG+ + ++ + V +GV L TPTVL Sbjct: 258 ASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPTVL 315 Query: 324 SPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 S RI L + VS + I +N D+P R A TT+EL G + LAGLL+ + Sbjct: 316 SENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTSEE 375 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVED 438 + IP L ++P +GALFR ++ + E E+ I AT LV+P + + P DH+ Sbjct: 376 NSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRAPT 435 Query: 439 DAKAFFFNRV 448 + F + Sbjct: 436 RLERLLFGEL 445 >gi|37680194|ref|NP_934803.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016] gi|37198941|dbj|BAC94774.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016] Length = 462 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 111/430 (25%), Positives = 203/430 (47%), Gaps = 35/430 (8%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 K+I + + + ++ + +++ V + D T ADV S R+ +FG VG+ +++++G +G Sbjct: 23 AKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKTPSARSALVFGAKVGKTDLVIVGKEG 82 Query: 107 KQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + + + ++ ++ LE L I ++ V D++ + G V + + + + L Sbjct: 83 EAIAHYRLNVKNSGLSQLEHHLETLYPSHRITLQSVGDSIAVAGTVASPEMAADILSLVN 142 Query: 166 TF----LSQSGRNQYANSSSKK-----------------VMNLLNIAGEDQVTLKVTIAE 204 F ++ R + N+ + + V+N L I QV + + + E Sbjct: 143 NFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIRMVE 202 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHAL 263 + + +++G I S P+ G +F + G D + ++ +F ++ AL Sbjct: 203 MAKSTSEELG----IRWQSVNPNWMLGVSPGNQFAT-GIDLTDPDNLIKESAFMGIIDAL 257 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + + LAEP LTA SG+ A F GG+ + ++ + V +GV L TPTVL Sbjct: 258 ASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPTVL 315 Query: 324 SPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 S RI L + VS + I +N D+P R A TT+EL G + LAGLL+ + Sbjct: 316 SENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTSEE 375 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVED 438 + IP L ++P +GALFR ++ + E E+ I AT LV+P + + P DH+ Sbjct: 376 NSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRAPT 435 Query: 439 DAKAFFFNRV 448 + F + Sbjct: 436 RLERLLFGEL 445 >gi|251791991|ref|YP_003006711.1| RcpA [Aggregatibacter aphrophilus NJ8700] gi|247533378|gb|ACS96624.1| RcpA [Aggregatibacter aphrophilus NJ8700] Length = 460 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 111/395 (28%), Positives = 196/395 (49%), Gaps = 33/395 (8%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114 ++Q + + VS P+ AD + T ++ K+ G+A V G DG+ + +N+D Sbjct: 41 LVQTKEKIDTIFVSSPSVADYEILDDNTFIIYAKDEGKAEVTAFGADGRPLTSDTVNVDS 100 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163 ++ +IA L+ ++N+ V+ V V+ G RT ++S +R V ++ Sbjct: 101 VV-TNIADTNKQLKTHFPNTNLSVKKVGKAYVIEGKARTQEESDEVRRIVGEALGTGRKV 159 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGS 222 +ET L S + V++ NI Q+ +K+T+ EV + + + +G S I GS Sbjct: 160 TETKLGNESVPFLDKYSYEGVVDHSNINDTTQINVKLTVVEVNKKLSEAMGINWSHIAGS 219 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAI 280 GP GG F + GG +GVL D ++AL+ + + LAEP ++ + Sbjct: 220 --GPL------LGGNFSAAGGFNGTQGVLRLDAKGISAFINALDNQSNGKILAEPNISML 271 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 SG++A GG+ + G+ S+ ++GV L + RI L + VS Sbjct: 272 SGETADILVGGEIPFAQ-RDKEGSPSIIYKEFGVKLAVAAKLQKNNRIRLVLDQSVSTLA 330 Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIPLLSKIPILGA 396 N G++P + R+A + E+ +G + ++ GL +D++ + + +PLL +PILG+ Sbjct: 331 GNYNFEGIGNIPYFDTRRAKSLFEVANGESFIIGGLFSSNDVEGINK-VPLLGDVPILGS 389 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 FRN+ NRE+ E+ I AT +VKPV +++ PD Sbjct: 390 FFRNASTNREKKELVIVATVNVVKPVEEKNIVYPD 424 >gi|320156053|ref|YP_004188432.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus MO6-24/O] gi|319931365|gb|ADV86229.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus MO6-24/O] Length = 462 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 111/430 (25%), Positives = 203/430 (47%), Gaps = 35/430 (8%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 K+I + + + ++ + +++ V + D T ADV S R+ +FG VG+ +++++G +G Sbjct: 23 AKQIDLEVGQSRLIPLSQEMRSVYIVDSTIADVKTPSARSALVFGAKVGKTDLVIVGKEG 82 Query: 107 KQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + + + ++ ++ LE L I ++ V D++ + G V + + + + L Sbjct: 83 EAIAHYRLNVKNSGLSQLERHLETLYPSHRIALQSVGDSIAVAGTVASPEMAADILSLVN 142 Query: 166 TF----LSQSGRNQYANSSSKK-----------------VMNLLNIAGEDQVTLKVTIAE 204 F ++ R + N+ + + V+N L I QV + + + E Sbjct: 143 NFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIRMVE 202 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHAL 263 + + +++G I S P+ G +F + G D + ++ +F ++ AL Sbjct: 203 MAKSTSEELG----IRWQSVNPNWMLGVSPGNQFAT-GIDLTDPDNLIKESAFMGIIDAL 257 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + + LAEP LTA SG+ A F GG+ + ++ + V +GV L TPTVL Sbjct: 258 ASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPTVL 315 Query: 324 SPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 S RI L + VS + I +N D+P R A TT+EL G + LAGLL+ + Sbjct: 316 SENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTSEE 375 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVED 438 + IP L ++P +GALFR ++ + E E+ I AT LV+P + + P DH+ Sbjct: 376 NSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRAPT 435 Query: 439 DAKAFFFNRV 448 + F + Sbjct: 436 RLERLLFGEL 445 >gi|206559894|ref|YP_002230658.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|198035935|emb|CAR51827.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 443 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 136/425 (32%), Positives = 201/425 (47%), Gaps = 56/425 (13%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-V 80 S +PP+ +A IS + IG ++I+ G +Q V V DP+ ADV V Sbjct: 13 SALAMPPLSDAADTSGTIS-LAIGAQRQIATGR----------ALQRVAVGDPSVADVLV 61 Query: 81 VHSPRT-MYLFGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 V R + L KN G NV++ G D + N+++ R + ++ Sbjct: 62 VKGGRGGVLLVAKNAGATNVMIWERGRDEPTVYNVNVT--------SGAARALLDGTSPS 113 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V T V+ G T+ QRAV ++T + G A++ I+G++ V Sbjct: 114 VNTYGGTTVIGGAAGTLDGHQRAVHAAKTVGGKDGTTLDAST----------ISGKNVVQ 163 Query: 198 LKVTIAEVRRDILKQIG---FQHSITGSSSG---PS--KSFAADFGGKF-------VSEG 242 + V + E R +LKQ G F+ S G S G P+ S + GG +S Sbjct: 164 VDVRVVEFSRSVLKQAGLNFFKQS-NGFSFGAFAPTGLTSISGTPGGSLTYNTSVPISSA 222 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + V V R F L LE R LA+PTL A+SGQSA+F +GG+ + V S Sbjct: 223 FNLVVNSV-SRGLFAD-LSILEANNLARVLAQPTLVALSGQSANFLAGGE-IPVPVPQSL 279 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADT 358 G S+ YGV L TPTVLSP RI L++ E S+ I +N+ +P+ R+ADT Sbjct: 280 GTISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRRADT 339 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TVEL G + V+ GL+ + +P L +PI+GA F+N + + + E+ I TP L Sbjct: 340 TVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVTPHL 399 Query: 419 VKPVA 423 V P+A Sbjct: 400 VAPIA 404 >gi|148975962|ref|ZP_01812751.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium SWAT-3] gi|145964707|gb|EDK29960.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium SWAT-3] Length = 456 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 109/407 (26%), Positives = 196/407 (48%), Gaps = 49/407 (12%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN +Q + V +++P+ D + + T+ +F +VGQ+ +I+ G D +L Sbjct: 34 SITLNDGQHIQFKSPIGQVFINNPSIVDYKIINDNTLVVFANSVGQSRLIVYGVDDDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ ++ + L+ D+ ++V+ V + V + G+V + L T L + Sbjct: 94 SDRIIVDLNLTDIRRQLKFHFPDAKVKVQSVGEQVAVSGVVDSEATRDDIYRLVATLLGR 153 Query: 171 SGRNQY------------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ N + + ++ + +A QV +K+++A+V Sbjct: 154 DKTEKWDKTQKLEFKSDSSDYEEPESMVFARNMTWEGIIERIEVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + +G S GSS G +FV + D + T++ AL Sbjct: 214 ESFGQTVGVDWSTVGSSVG-----------EFVFDQ--------FDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 LAEP LT +SG+SASF GG+ + S++ +++ ++G+ L T VLS Sbjct: 255 QIAEVLAEPNLTVLSGESASFLVGGE--VPVIVSTSSNVNISFKEFGIKLDLTAKVLSQD 312 Query: 327 RIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKE 383 +I +++ EVSE V A +P R+A TTVEL G + VL GL+ D++++++ Sbjct: 313 KIRMQLAPEVSEVEGYVEAAGIKVPQLASRRAMTTVELADGDSFVLGGLMSSADLEKMQK 372 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + IP+LGA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 373 -IPFVGDIPVLGAAFRKATTERKRTELIIVATVNLVEPMKPKDIQLP 418 >gi|119566857|gb|ABL84265.1| RcpA [Yersinia ruckeri] Length = 438 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 113/377 (29%), Positives = 188/377 (49%), Gaps = 33/377 (8%) Query: 65 DVQDVLVSDPTK-ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D D + S TK AD + ++ ++ K G A L K + + + +++ I+ Sbjct: 49 DEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKKNKPIHKVAVFVDKIISKA 108 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE--LSETFLSQSGRNQ---YAN 178 + +R DS I + + + +L G +T ++++ +E ++ S R + Y Sbjct: 109 KKRIRIEYPDSQININKLGEGYILTGTAQT-EEARETIEKIVANAIGSVPVRQEKWGYTI 167 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S + N + I +QV +K+TIAEV +D IG S G+ SG S F GK Sbjct: 168 HSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIGNVSG-SFHFTQFNAGKI 226 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 T++ A+ + R LAEP L+ +SG++ASF GG+ V Sbjct: 227 ------------------STLVQAINDESVARVLAEPNLSVLSGETASFLVGGE--LPIV 266 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD-MPSYRVRK 355 S++ +V+ ++G+ L+ V RI +++ EVS + + V+ G P+ R RK Sbjct: 267 STTQNTINVSYKEFGIKLNIGAKVSESKRIRVKLDEEVSSLDKMFNVDGGSSYPALRTRK 326 Query: 356 ADTTVELPSGGTIVLAGLL-KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 A TTVEL G + +L GL+ ++D + LK+ IPL+ IPILGALFR + + +E+ + A Sbjct: 327 AGTTVELGDGESFILGGLISREDKENLKK-IPLIGDIPILGALFRKTGTQTKRSELVVIA 385 Query: 415 TPFLVKPVAMRDLSRPD 431 T LVKP+ +D+ PD Sbjct: 386 TVNLVKPMQSKDVGLPD 402 >gi|238755450|ref|ZP_04616790.1| Type II/III secretion system protein [Yersinia ruckeri ATCC 29473] gi|238706291|gb|EEP98668.1| Type II/III secretion system protein [Yersinia ruckeri ATCC 29473] Length = 430 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 113/377 (29%), Positives = 188/377 (49%), Gaps = 33/377 (8%) Query: 65 DVQDVLVSDPTK-ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D D + S TK AD + ++ ++ K G A L K + + + +++ I+ Sbjct: 41 DEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKKNKPIHKVAVFVDKIISKA 100 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE--LSETFLSQSGRNQ---YAN 178 + +R DS I + + + +L G +T ++++ +E ++ S R + Y Sbjct: 101 KKRIRIEYPDSQININKLGEGYILTGTAQT-EEARETIEKIVANAIGSVPVRQEKWGYTI 159 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S + N + I +QV +K+TIAEV +D IG S G+ SG S F GK Sbjct: 160 HSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIGNVSG-SFHFTQFNAGKI 218 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 T++ A+ + R LAEP L+ +SG++ASF GG+ V Sbjct: 219 ------------------STLVQAINDESVARVLAEPNLSVLSGETASFLVGGE--LPIV 258 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD-MPSYRVRK 355 S++ +V+ ++G+ L+ V RI +++ EVS + + V+ G P+ R RK Sbjct: 259 STTQNTINVSYKEFGIKLNIGAKVSESKRIRVKLDEEVSSLDKMFNVDGGSSYPALRTRK 318 Query: 356 ADTTVELPSGGTIVLAGLL-KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 A TTVEL G + +L GL+ ++D + LK+ IPL+ IPILGALFR + + +E+ + A Sbjct: 319 AGTTVELGDGESFILGGLISREDKENLKK-IPLIGDIPILGALFRKTGTQTKRSELVVIA 377 Query: 415 TPFLVKPVAMRDLSRPD 431 T LVKP+ +D+ PD Sbjct: 378 TVNLVKPMQSKDVGLPD 394 >gi|107022594|ref|YP_620921.1| type II and III secretion system protein [Burkholderia cenocepacia AU 1054] gi|116689543|ref|YP_835166.1| type II and III secretion system protein [Burkholderia cenocepacia HI2424] gi|170732847|ref|YP_001764794.1| type II and III secretion system protein [Burkholderia cenocepacia MC0-3] gi|105892783|gb|ABF75948.1| type II and III secretion system protein [Burkholderia cenocepacia AU 1054] gi|116647632|gb|ABK08273.1| type II and III secretion system protein [Burkholderia cenocepacia HI2424] gi|169816089|gb|ACA90672.1| type II and III secretion system protein [Burkholderia cenocepacia MC0-3] Length = 443 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 133/428 (31%), Positives = 198/428 (46%), Gaps = 62/428 (14%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-V 80 S +PP+ +A IS + IG ++I+ G +Q V V DP+ ADV V Sbjct: 13 SALAMPPLSDAADTSGTIS-LAIGAQRQIATGR----------ALQRVAVGDPSVADVLV 61 Query: 81 VHSPRT-MYLFGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 V R + L KN G NV++ G D + N+++ R + ++ Sbjct: 62 VKGGRGGVLLVAKNAGATNVMIWERGRDEPTVYNVNVT--------SGAARALLDGTSPS 113 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V T V+ G T+ QRAV ++T + G A++ I+G++ V Sbjct: 114 VNTYGGTTVIGGAAGTLDGHQRAVHAAKTVGGKDGTTLDAST----------ISGKNVVQ 163 Query: 198 LKVTIAEVRRDILKQIGFQH------------------SITGSSSGPSKSFAADFGGKFV 239 + V + E R +LKQ G SITG+ G S ++ + Sbjct: 164 VDVRVVEFSRSVLKQAGLNFFKQSNGFAFGAFAPTGLTSITGTPGG-SLTYNTSV---PI 219 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S + V V R F L LE R LA+PTL A+SGQSA+F +GG+ + V Sbjct: 220 SSAFNLVVNSV-SRGLFAD-LSILEANNLARVLAQPTLVALSGQSANFLAGGE-IPVPVP 276 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRK 355 S G S+ YGV L TPTVLSP RI L++ E S+ I +N+ +P+ R+ Sbjct: 277 QSLGTISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRR 336 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ADTTVEL G + V+ GL+ + +P L +PI+GA F+N + + + E+ I T Sbjct: 337 ADTTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVT 396 Query: 416 PFLVKPVA 423 P LV P+A Sbjct: 397 PHLVAPIA 404 >gi|27378611|ref|NP_770140.1| hypothetical protein blr3500 [Bradyrhizobium japonicum USDA 110] gi|27351759|dbj|BAC48765.1| blr3500 [Bradyrhizobium japonicum USDA 110] Length = 550 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 137/512 (26%), Positives = 216/512 (42%), Gaps = 83/512 (16%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAA----------VINISDVEIGKGKKIS 51 R +T +++ + +VA P A AA V ++DV+ ++ Sbjct: 5 RVSGKTVARLLAFGVMGLGAAVALCGPADRAEAADRRGSSGGVFVSEMNDVQ-----RVR 59 Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + +NK +V ++ P DV S +Y+ GK G NVIL KQ+ Sbjct: 60 VVVNKSRTFKVDTAFATIIAGSPDIVDVKSLSDHMIYVQGKQTGTTNVILFDSAMKQIGV 119 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 LD+ + D +L+ +R +RV VVL G ++RA+ ++ + +++ Sbjct: 120 LDVEVVIDTGNLQQNIRTGTGMQGVRVSASEGQVVLSGTAVDAVAAERAMAIATSTVAKG 179 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------SG 225 G V+N +++A QV L+V EV R+ + +G S ++ SG Sbjct: 180 G----------TVVNAMSVAAPQQVMLEVRFLEVSREAGRNLGVNLSAANANGTNIGNSG 229 Query: 226 PSKSFAAD---FGGKFVSEG--------------GDFSVKGVLDRF-------------- 254 + AA GG + G G V G L Sbjct: 230 LGRVTAAGRTPIGGINTANGPLGAGGGPVGSAPTGSLPVLGTLGTLAGTAGGIAPAPFGT 289 Query: 255 ------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 S + ++ ALE R LAEP LT +SG +A F +GG+ + +T Sbjct: 290 LLTSLIRTSNGGSVDMLISALETKGLARRLAEPNLTTLSGDAARFLAGGEFPVPIPTQTT 349 Query: 303 GATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRK 355 T +Y GV L F PTVLS G I LR++ VSE + + +P+ R Sbjct: 350 NGFPTITIEYKKFGVELAFVPTVLSRGVINLRVEPSVSELDFANAVTIQGTTVPALTRRD 409 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A TTVEL G + +AGLL+ +Q +P + +P++G LF + + +EET++ I T Sbjct: 410 ARTTVELRDGQSFAIAGLLQTRNRQDVSQLPWIGSVPVIGTLFSSKSYQQEETDLVIIVT 469 Query: 416 PFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFN 446 P LV P A + L+ P D +D FF N Sbjct: 470 PRLVAPAAPGQQLASPLDSRLPANDVD-FFLN 500 >gi|238897548|ref|YP_002923227.1| putative tight adherance operon protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465305|gb|ACQ67079.1| putative tight adherance operon protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 459 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 115/460 (25%), Positives = 215/460 (46%), Gaps = 73/460 (15%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 + QR + IF F + P ANAA N D+ + +G+ + +++ Sbjct: 6 FYQRCIKLIFFIFGFFTLPG--------SANAA--NTGDLFMSEGESL--------VIKK 47 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 ++ V VS+P AD + T+ ++ K G++ + + ++++ I Sbjct: 48 KQNIDTVFVSNPAVADYKIVDHNTVIIYAKAEGKSEFTFFEPNQNISYHATVMVDNIIKV 107 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGM----------VRTIQDSQRA----------VE 162 + +R +S +++E + + +L GM VR + +S ++ V Sbjct: 108 VSDKIRMLYPESQVQIEKIGKSYLLTGMAPTEEVRDNIVRMVGESIQSPKSNDKDTVSVR 167 Query: 163 L--------SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 L SET +++ + N ++++N + + +QV +K++I EV ++ IG Sbjct: 168 LDISDKGDASET--TENVNSSLTNKVYERLINQIQLPVSNQVNVKLSIVEVSKEFKDNIG 225 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 F+ + G+ S +F AD +++AL+ + R LAE Sbjct: 226 FEWANLGTFSFHKFNFTAD---------------------RITHLVNALQDDSIARVLAE 264 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L+ +SG+SASF GG+ Y ++ S+ ++G+ L T V R+ + + Sbjct: 265 PNLSVLSGESASFLVGGEIPYVKDRDASNRASIDFKEFGIKLSVTAKVNENKRVKVMLSE 324 Query: 335 EVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 E+S VIG + MPS + R+A+TTVEL G + VL GL+ + Q+ + +P + I Sbjct: 325 EISS-VIGNTKAEEFTMPSLKKRRANTTVELADGESFVLGGLMNQEEQEALQKVPFIGDI 383 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 PILG+ FR+++ N E+ + AT LVKP+ ++++ PD Sbjct: 384 PILGSFFRHTKTNNRSIELIVVATVNLVKPIPSKEITLPD 423 >gi|84385684|ref|ZP_00988715.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01] gi|84379664|gb|EAP96516.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01] Length = 456 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 107/407 (26%), Positives = 195/407 (47%), Gaps = 49/407 (12%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN +Q+ + V +++P D + + T+ +F +GQ+ +I+ G DG +L Sbjct: 34 SITLNDGQHIQLKSPIGQVFINNPDIVDYKIINDNTIVVFANAIGQSRLIVYGIDGDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ D+ + L+ ++ ++++ V + V + G+V + L T L + Sbjct: 94 SDRIIVDLDLTDIRRQLKFHFPNAKVKIQSVGEQVAVSGLVDSEATRDDIYRLVATLLGR 153 Query: 171 SGRNQY------------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ N + + ++ + +A QV +K+++A+V Sbjct: 154 EKTEKWDKTVKLEFKSDSSNYEEPESFVFARNMTWEGIIERIEVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + +G S GSS G +FV + D + T++ AL Sbjct: 214 ESFGQTVGVDWSSVGSSVG-----------EFVFDQ--------FDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 LAEP LT +SG+SASF GG+ + +++ +++ ++G+ L T VLS Sbjct: 255 QIAEVLAEPNLTVLSGESASFLVGGE--VPVIVTTSNNVNISFKEFGIKLDLTAKVLSQD 312 Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKE 383 RI +++ EVSE I +P R+A TTVEL G + VL GL+ D++++++ Sbjct: 313 RIRMQLAPEVSEVEGYIETAGIKVPQLASRRAMTTVELADGDSFVLGGLMSSADLEKMQK 372 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + IP+LGA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 373 -IPFVGDIPVLGAAFRKATTERKRTELIIVATVNLVEPMKPKDIQLP 418 >gi|294012239|ref|YP_003545699.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] gi|292675569|dbj|BAI97087.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] Length = 543 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 120/213 (56%), Gaps = 10/213 (4%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATS 306 L + L ALER ++TLAEPTL A+SG++ASF +GG+ + +G+ S Sbjct: 293 LGGLRISSALDALERKGLVKTLAEPTLVALSGETASFLAGGEFPIPVAQNGNGTGSGSNS 352 Query: 307 VTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPV--IGVNAGDMPSYRVRKADTTV 360 +T +GV L FTPTVLS G I L ++ EVS +P + +N +P R+A T V Sbjct: 353 ITVEFKPFGVSLGFTPTVLSDGIINLVVEPEVSSIDPSASVQINGLVIPGLLTRRAKTVV 412 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL G + +AGLL++D Q IP+L +PI+GALFR+S F ++ETE+ + TP LVK Sbjct: 413 ELRDGQSFAIAGLLRNDFQDTIRQIPVLGSLPIIGALFRSSGFQKQETELVMIVTPRLVK 472 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 P+ D+ P D + F R +K G Sbjct: 473 PMRADDVRLPTDRVGNPHELDLFLMGRTDKAVG 505 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 28/227 (12%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 LP +A A +N+S+ ++ + LNK +L V LV + ADV+ + R Sbjct: 15 LPMQAQAQVASLNVSNAN--HAGQLDVPLNKSQVLTVDRPFAKALVGNAEIADVLPMTNR 72 Query: 86 TMYLFGKNVGQANVILIGHDGKQML--NLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 ++Y+ GK +G ++ L +D + M+ +D+ + D+ L+ L I I + +D Sbjct: 73 SVYVLGKKMGTTSLTL--YDSRNMMIAVVDVAVGPDVVTLKRQLSELIPGEQIGARISND 130 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 ++L G V + +AV ++ T+ S+K++N+L++ QV L+V + Sbjct: 131 ALILTGTVSSAAAVDQAVRIASTYA----------GGSEKIVNMLSVGASQQVMLEVRFS 180 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 EV R K++G H+ +S GKFV G+ + GV Sbjct: 181 EVNRQAAKELGLNHTFLNNS------------GKFVGGMGENGLAGV 215 >gi|296158794|ref|ZP_06841623.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] gi|295890999|gb|EFG70788.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] Length = 474 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 114/378 (30%), Positives = 177/378 (46%), Gaps = 38/378 (10%) Query: 66 VQDVLVSDPTKADVVV---HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 +Q V + DP+ ADV++ + L GK G N++L D L + + A Sbjct: 76 LQRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARDRDAPLQYTVDVTTPAAA 135 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + V+++ T V+ G T++ QRAV +E L + G Sbjct: 136 ------SLLGPDTPAVKVLGGTAVVSGTSATMEAHQRAVVAAEGSLGKDG---------- 179 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-----HSITGSSSGPSK-SFAADFGG 236 V + +A V + V + E R +LK++GF + T S PS S + G Sbjct: 180 AVFDTSTVASRAVVQVDVRVVEFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVSATAG 239 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHAL-------ERATAIRTLAEPTLTAISGQSASFTS 289 + S G + + F + H L E R LAEPTL A+SGQSASF + Sbjct: 240 QAPSMTGVTPISSAFNLI-FNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSASFLA 298 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNA 345 GG+ + V + G+TS+ YG+ L TPTVLSP RI L++ E S+ + ++ Sbjct: 299 GGE-VPIPVPQALGSTSIEFKPYGIGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISG 357 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P++ R+ADTTVEL G + V+ GL+ + +PLL +P++G F+ + + Sbjct: 358 VSVPAFITRRADTTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLNYQQ 417 Query: 406 EETEIFIAATPFLVKPVA 423 E E+ I TP LV P+A Sbjct: 418 NEKELVIIVTPHLVSPLA 435 >gi|37676253|ref|NP_936649.1| rough colony protein RcpA [Vibrio vulnificus YJ016] gi|326424174|ref|NP_762071.2| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus CMCP6] gi|37200794|dbj|BAC96619.1| rough colony protein RcpA [Vibrio vulnificus YJ016] gi|319999557|gb|AAO07061.2| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus CMCP6] Length = 441 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 115/386 (29%), Positives = 189/386 (48%), Gaps = 41/386 (10%) Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 + V V P AD + + ++G +G +VI+ G ++ N ++++ + + ++ Sbjct: 42 ISTVFVGAPEIADYKIIDETKVVVYGVGLGATSVIVYDRAGNELYNAEVVVNKSLRLVKQ 101 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMV----------RTIQD------SQRAVELSETFLS 169 TL D +I + V + VVL G+V RT+ + ++ + L +T Sbjct: 102 TLIARFPDESINITNVGEQVVLDGVVSSEEVKTQIYRTVGEMLKKSVTRNTLTLQDTSGG 161 Query: 170 QSGRNQY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 Q Y A ++N L + +Q+ +K+T+AEV L ++G +S +G + Sbjct: 162 QVDSLDYTATYIYDNIINNLKVLTTEQINVKLTVAEVSSSFLSELGVSYSDSGQA----- 216 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G+FV++ DF+ + ++ V+ A R LAEP L+ ISG++ASF Sbjct: 217 -------GRFVNKLLDFTAQDIV------AVITASGDDQIGRVLAEPNLSVISGETASFL 263 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVN 344 GG+ L + +G SV+ +YGV L V I L + EVS E Sbjct: 264 VGGE-LPIAIRDESG-ISVSYKEYGVKLSMVAKVTDSENIRLSLLPEVSSIDEENKTANG 321 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 ++P+ R RKA TTV+L G + VLAGLL + ++ IP+L IPILGALF +++ N Sbjct: 322 LINVPALRTRKAQTTVQLKDGQSFVLAGLLTSEERESLSKIPVLGDIPILGALFSHTKSN 381 Query: 405 REETEIFIAATPFLVKPVAMRDLSRP 430 + +TE+ I AT LV PV D+ P Sbjct: 382 QTKTELIIVATVNLVDPVKAEDIKLP 407 >gi|134295595|ref|YP_001119330.1| type II and III secretion system protein [Burkholderia vietnamiensis G4] gi|134138752|gb|ABO54495.1| type II and III secretion system protein [Burkholderia vietnamiensis G4] Length = 443 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 117/385 (30%), Positives = 179/385 (46%), Gaps = 50/385 (12%) Query: 66 VQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVILI--GHDGKQMLNLDILIERDI 120 +Q V V DP ADV++ ++ L K G NV++ GHD + N++++ Sbjct: 43 LQRVAVGDPAIADVLIMKGSRAGSVLLTAKAPGTTNVMVWERGHDEPTVWNVEVVDAAAQ 102 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 A L+ S +V+ T VL G ++ +RAV +++ S Sbjct: 103 AVLDA--------STPQVKAYGGTSVLRGTAGSLDAHERAVAVAKNM-----------SP 143 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAAD 233 V++ +AG++ V + V + E R +LKQ+GF S S G +S+ Sbjct: 144 KGAVIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQSNGFSFGSFSPGGVQSYN-- 201 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHA-----------LERATAIRTLAEPTLTAISG 282 GG G +F V++A LE R LAEPTL A+SG Sbjct: 202 -GGSGPGTAAYIPTLGAPVASAFNLVVNAAGHGIFADLSLLEANNLARVLAEPTLVALSG 260 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 QSASF +GG+ + G+T++ YGV L TPTVLSP RI L++ E S+ Sbjct: 261 QSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLSPNRIALKVAPESSQLDFV 319 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + ++ +P R+ADTTVEL G + V+ GL+ +PLL +PI+G F Sbjct: 320 NSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFF 379 Query: 399 RNSRFNREETEIFIAATPFLVKPVA 423 +N + + + E+ I TP LV P+A Sbjct: 380 KNLNYQQNDKELLIIVTPHLVAPIA 404 >gi|327541686|gb|EGF28210.1| bacterial type II/III secretion system protein [Rhodopirellula baltica WH47] Length = 454 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 99/332 (29%), Positives = 160/332 (48%), Gaps = 33/332 (9%) Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 +++RV + ++ ++ G V ++ D +AV ++E F + V+N + + G Sbjct: 8 ASLRVTPIGESAIISGYVTSVDDVDKAVAITEQFYT-------------TVINNIQVVGI 54 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGGDFSVKG 249 QV L I EV R L+++G +I + +GPS D G V F Sbjct: 55 QQVLLHTKIMEVSRTKLRELGVDLAILDDNFTLLNGPSGVL--DVGAGIVEGDAGFGPIP 112 Query: 250 VLD---RFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + D RF+ FET+++AL + LAEPT+ A G+ A FT GG+ + V Sbjct: 113 LGDTNLRFNVNGNFETLINALHEQRLTKLLAEPTVVATHGRPARFTVGGR-IPTIVPGQN 171 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADT 358 G +T DYG + F P V+ PGRI L ++ EVSEP + VN ++ ++ R +T Sbjct: 172 GQVQITYEDYGTSIDFLPFVVGPGRIRLEVRPEVSEPDPSRAVTVNGTNVTAFTTRYVET 231 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +G T LAGLL+ + P +P +G LFR + R E E+ I TP L Sbjct: 232 AVEMQAGQTFALAGLLQSRTESTTSRTPFFGSLPYVGTLFRKMQERRNEIELLILVTPEL 291 Query: 419 VKPVAMRDLSR--PDDHYSVEDDAKAFFFNRV 448 V+ + ++ R P + DD + + + + Sbjct: 292 VEAMDPHEVPRGGPGMNSHSPDDKEFYLYGHI 323 >gi|283779855|ref|YP_003370610.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283438308|gb|ADB16750.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 585 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 106/382 (27%), Positives = 179/382 (46%), Gaps = 30/382 (7%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G +K+ + +N +++ P DV +LV++P + SP ++ L G + + Sbjct: 56 GPAEKLEMTVNTSRVVEFPFDVPKMLVNNPDLVRITPISPNSIQLSAVKGGVTQLNVWNA 115 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 D Q+ LD+++ D+ LEM L+ D+ IR+ ++ ++ + G V + ++ Sbjct: 116 D-DQVTTLDLIVIPDVQELEMILKHEFPDAAIRLRPLASSLYISGFVPKAEMVASITRVA 174 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------ 218 E + K++N + + G +V L V + EV R L+ +GF + Sbjct: 175 EDYF-------------PKIINNMTVGGVQKVLLHVKVMEVSRTKLRTMGFDWAQLNGDD 221 Query: 219 -ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-DRFSFETVLHALERATAIRTLAEPT 276 +T S SG ++ G G G+L D F L AL + + LAEPT Sbjct: 222 FVTQSVSGLLQT-----PGTLTGNTGATVRFGILTDNNQFYGFLEALRQNDLAKLLAEPT 276 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L +SG+ A F GG+ + + S G T+V +G + F P VL G I L ++ EV Sbjct: 277 LVTMSGRPAYFNVGGE-VPIPMQQSLGVTTVQYKQFGTRIDFVPIVLGNGSIRLEVRPEV 335 Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +E P + +P +R R ADT VE+ +G T+ +AGL+ + ++ G+P L+ +P Sbjct: 336 TEIDPSLRDAVTGVPGFRQRGADTAVEIKAGQTMAIAGLVYNRVEASNRGVPFLADLPWA 395 Query: 395 GALFRNSRFNREETEIFIAATP 416 G FR E E+ I TP Sbjct: 396 GGAFRRVSEKVNEVELVIMVTP 417 >gi|172060495|ref|YP_001808147.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] gi|171993012|gb|ACB63931.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] Length = 461 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 117/385 (30%), Positives = 179/385 (46%), Gaps = 50/385 (12%) Query: 66 VQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQANVILI--GHDGKQMLNLDILIERDI 120 +Q V V DPT ADV++ ++ L K G NV+L GHD + +++++ Sbjct: 61 LQRVAVGDPTIADVLIMKGSRSGSVLLTAKAPGATNVMLWERGHDEPTVWSIEVVDAAAH 120 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 A L+ ++ + V+ T VL G T+ +RA +++ S Sbjct: 121 AVLDGSMPQ--------VKAYGGTSVLRGTSATLDAHERAATVAKNM-----------SP 161 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAAD 233 V++ +AG+ V + V + E R +LKQ+GF S S G +S+ Sbjct: 162 KGTVIDRSTLAGKSVVQVDVRVVEFSRSVLKQVGFNFFKQSNGFSFGSFSPGGVQSYN-- 219 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHA-----------LERATAIRTLAEPTLTAISG 282 GG G G +F V++A LE R LAEPTL A+SG Sbjct: 220 -GGSGPGTAGYIPALGAPVASAFNLVVNAAGRGIFADLSLLEANNMARVLAEPTLVALSG 278 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 QSASF +GG+ + G+T++ YGV L TPTVL P RI L++ E S+ Sbjct: 279 QSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLGPNRIALKVAPESSQLDFV 337 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + ++ +P R+ADTTVEL G + V+ GL+ +PLL +PI+G F Sbjct: 338 NSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFF 397 Query: 399 RNSRFNREETEIFIAATPFLVKPVA 423 +N + + + E+ I TP LV P+A Sbjct: 398 KNLNYQQNDKELLIIVTPHLVAPIA 422 >gi|170724970|ref|YP_001758996.1| type II and III secretion system protein [Shewanella woodyi ATCC 51908] gi|169810317|gb|ACA84901.1| type II and III secretion system protein [Shewanella woodyi ATCC 51908] Length = 446 Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 105/402 (26%), Positives = 194/402 (48%), Gaps = 44/402 (10%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + LN +++ ++ V +S P AD + + ++G+ +GQA + + + +L+ Sbjct: 29 VTLNDASSIELKQEIGTVFISQPEVADYKITGNNKLVIYGRQLGQARLFVYNKANEVILS 88 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ---------------- 155 + ++ +++ + L+ F D ++ + V D V + G+V + + Sbjct: 89 QLLHVDINLSQIRRQLKLFYPDLDLTLTSVGDKVAVRGIVYSEEQRNDIYRQVATFLGRE 148 Query: 156 -----DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 D VE ++F + N + ++ L ++ QV +K+++A+V ++ Sbjct: 149 KVERFDESELVEFKDSFTEANWLAYERNFIWQGIIEGLRLSQTQQVNVKISVAQVTKEFN 208 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 + +G S G S G SF DF + D S T+++AL + + Sbjct: 209 ETLGVSWSTVGRSVGEF-SFL-DF------KASDLS-----------TIINALGKDSIAE 249 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP L+ +SG+SASF GG+ + S+ T++T ++G+ L + VL+ +I L Sbjct: 250 VLAEPNLSVMSGESASFLVGGE--IPVIFSNNNTTNITYKEFGIRLDLSAKVLNNEKIKL 307 Query: 331 RIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 ++ EVS E + +P R+A TT+EL G + +L GL+ D + IPLL Sbjct: 308 QMMPEVSAVEGFVEAAGIKIPQLTTRRAMTTIELGDGDSFLLGGLMSSDELENVSKIPLL 367 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP+ GALFR + R++TE+ I AT LVKP++ ++ P Sbjct: 368 GDIPVFGALFRQAGTTRKKTELVIVATVNLVKPLSPTEVRLP 409 >gi|91783011|ref|YP_558217.1| putative outer membrane channel signal peptide protein, CpaC like [Burkholderia xenovorans LB400] gi|91686965|gb|ABE30165.1| Putative outer membrane channel signal peptide protein, CpaC like protein [Burkholderia xenovorans LB400] Length = 454 Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 113/378 (29%), Positives = 176/378 (46%), Gaps = 38/378 (10%) Query: 66 VQDVLVSDPTKADVVV---HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 +Q + + DP+ ADV++ + L GK G N++L D L + + A Sbjct: 56 LQRIAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARDRDAPLQYTVDVTTPAAA 115 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + V+++ T V+ G T++ QRAV +E L + G Sbjct: 116 ------SLLGPDTPAVKVLGGTAVVSGTSATMEAHQRAVVAAEGSLGKDG---------- 159 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-----HSITGSSSGPSK-SFAADFGG 236 V + +A V + V + E R +LK++GF + T S PS S + G Sbjct: 160 AVFDTSTVASRAVVQVDVRVVEFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVSATAG 219 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHAL-------ERATAIRTLAEPTLTAISGQSASFTS 289 + S G + + F + H L E R LAEPTL A+SGQSASF + Sbjct: 220 QAPSMTGVTPISSAFNLI-FNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSASFLA 278 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNA 345 GG+ + V + G TS+ YG+ L TPTVLSP RI L++ E S+ + ++ Sbjct: 279 GGE-VPIPVPQALGTTSIEFKPYGIGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISG 337 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P++ R+ADTTVEL G + V+ GL+ + +PLL +P++G F+ + + Sbjct: 338 VSVPAFITRRADTTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLNYQQ 397 Query: 406 EETEIFIAATPFLVKPVA 423 E E+ I TP LV P+A Sbjct: 398 NEKELVIIVTPHLVSPLA 415 >gi|330882201|gb|EGH16350.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 216 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/192 (40%), Positives = 115/192 (59%), Gaps = 5/192 (2%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + + +L AL+ + LAEP +TA++GQ+ASF +GG+ + V + + YGV Sbjct: 13 NIDAMLEALQSNGVLEVLAEPNITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGV 71 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L F+PT+L GRI L+++ EVS + VN +PS+RVR+ADT VE+ SG T + Sbjct: 72 SLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAI 131 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGL + + Q + +P+L +PILG LFR+ RF R ETE+ I TP+LV+PV R ++ P Sbjct: 132 AGLFQHESSQDMDKVPMLGDMPILGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATP 191 Query: 431 DDHYSVEDDAKA 442 D A A Sbjct: 192 LDKQRAASTASA 203 >gi|218676249|ref|YP_002395068.1| Flp pilus assembly protein [Vibrio splendidus LGP32] gi|218324517|emb|CAV25991.1| Flp pilus assembly protein [Vibrio splendidus LGP32] Length = 446 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 117/388 (30%), Positives = 186/388 (47%), Gaps = 45/388 (11%) Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 + V V++ AD + + ++G G +VI+ G ++ N ++++ + + L+ Sbjct: 47 ISTVFVANQEVADYKIIDENKVVVYGVGQGATSVIVYDRGGNEIYNAELVVNQSLRLLKQ 106 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----------- 174 TL D N+ V V D VVL G+V + + Q+ L L + R Sbjct: 107 TLIARFPDENVVVSNVGDQVVLDGIVGSEEIKQKINRLVGEMLKKDRRRAAYELKDADGE 166 Query: 175 -----QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 +Y A + +V+N L + +Q+ +K+T+AEV L ++G +S +G Sbjct: 167 ALDELEYTAKYNYDQVINNLKVLTTEQINVKLTVAEVSSSFLTELGVTYSDSGQP----- 221 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G FV++ DF+ + ++ +V+ A R LAEP L+ ISG+ ASF Sbjct: 222 -------GTFVNKLLDFTAQDIV------SVISASGDDKIGRVLAEPNLSVISGEQASFL 268 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342 +GG+ + V G T ++ +YGV L V I L + EVS + G Sbjct: 269 AGGE-IPIAVRDQDGIT-ISYKEYGVKLAMVAKVTDTENIRLTLIPEVSSIDESNKTTTG 326 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + +PS R R+A TTV L G + VLAGLL + ++ IP+L IPILGALF +S Sbjct: 327 LIS--VPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTKIPILGDIPILGALFSHSS 384 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430 NR +TE+ I AT LV PV + P Sbjct: 385 TNRSKTELIIVATVNLVDPVEQEQVKLP 412 >gi|145299828|ref|YP_001142669.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp. salmonicida A449] gi|142852600|gb|ABO90921.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp. salmonicida A449] Length = 461 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 121/444 (27%), Positives = 195/444 (43%), Gaps = 52/444 (11%) Query: 66 VQDVLVSDPTKADVVVHSP--RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V+D V++ V VHSP + + ++G+ VG+ ++++ DG+ + + + + D+A L Sbjct: 34 VRDAFVAN--SELVRVHSPSDQQLLIYGRKVGRTDLVVTAQDGRTLGHYRVQVVADLAPL 91 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS-------------- 169 + R+ S + +V+ G V + + + + E F Sbjct: 92 KQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILAMVEAFAKGIQPQGVPSGPVAP 151 Query: 170 ---QSGRN------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 QSG QYAN V+N L +AG DQ+ + V I E++R +Q+G Sbjct: 152 AQPQSGNQDEGAAVAGGGSGQYAN-----VINQLRLAGSDQINISVRIVEMQRTTSEQLG 206 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + S G G +F S G D ++ AL + + LAE Sbjct: 207 LRWSAMGE----YLQLGVSPGNRFPKPAERGSWGGKKDVVYINAIIDALVENSLVNVLAE 262 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P LTA SG++A+F SGG+ + + G + +G+ L TPT+L RI L + Sbjct: 263 PNLTAKSGEAATFMSGGEFPFPVGNGDNGP-EIEFKKFGISLELTPTLLDNNRISLTVSP 321 Query: 335 EVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVS E + + +P R+ TT+EL G + LAGL++ Q E +P L + Sbjct: 322 EVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTHRNQSSEALPFLGE 381 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVN 449 IP L F ++ F +E+E+ I AT LV+P + LS P DHY + FF + Sbjct: 382 IPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRAPSRFERRFFTDM- 440 Query: 450 KIYGPKEASEVEGQNYKGAIGFIY 473 G E + G G+ Y Sbjct: 441 ---GSTERPGAQATRLFGNYGYSY 461 >gi|88866586|gb|ABD57354.1| FlpC [Aeromonas salmonicida subsp. salmonicida A449] Length = 479 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 121/444 (27%), Positives = 195/444 (43%), Gaps = 52/444 (11%) Query: 66 VQDVLVSDPTKADVVVHSP--RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V+D V++ V VHSP + + ++G+ VG+ ++++ DG+ + + + + D+A L Sbjct: 52 VRDAFVAN--SELVRVHSPSDQQLLIYGRKVGRTDLVVTAQDGRTLGHYRVQVVADLAPL 109 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS-------------- 169 + R+ S + +V+ G V + + + + E F Sbjct: 110 KQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILAMVEAFAKGIQPQGVPSGPVAP 169 Query: 170 ---QSGRN------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 QSG QYAN V+N L +AG DQ+ + V I E++R +Q+G Sbjct: 170 AQPQSGNQDEGAAVAGGGSGQYAN-----VINQLRLAGSDQINISVRIVEMQRTTSEQLG 224 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + S G G +F S G D ++ AL + + LAE Sbjct: 225 LRWSAMGE----YLQLGVSPGNRFPKPAERGSWGGKKDVVYINAIIDALVENSLVNVLAE 280 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P LTA SG++A+F SGG+ + + G + +G+ L TPT+L RI L + Sbjct: 281 PNLTAKSGEAATFMSGGEFPFPVGNGDNGP-EIEFKKFGISLELTPTLLDNNRISLTVSP 339 Query: 335 EVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVS E + + +P R+ TT+EL G + LAGL++ Q E +P L + Sbjct: 340 EVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTHRNQSSEALPFLGE 399 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVN 449 IP L F ++ F +E+E+ I AT LV+P + LS P DHY + FF + Sbjct: 400 IPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRAPSRFERRFFTDM- 458 Query: 450 KIYGPKEASEVEGQNYKGAIGFIY 473 G E + G G+ Y Sbjct: 459 ---GSTERPGAQATRLFGNYGYSY 479 >gi|86144318|ref|ZP_01062650.1| Flp pilus assembly protein [Vibrio sp. MED222] gi|85837217|gb|EAQ55329.1| Flp pilus assembly protein [Vibrio sp. MED222] Length = 441 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 45/388 (11%) Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 + V V++ AD + + ++G G +VI+ G ++ N ++++ + + L+ Sbjct: 42 ISTVFVANQEIADYKIIDENKVVVYGVGQGTTSVIVYDRGGNEIYNAELVVNQSLRLLKQ 101 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----------- 174 TL D N+ V V D VVL G+V + + Q+ L L + R Sbjct: 102 TLIARFPDENVVVSNVGDQVVLDGIVGSEEIKQKINRLVGEMLKKDRRRAAYELKDADGE 161 Query: 175 -----QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 +Y A + +V+N L + +Q+ +K+T+AEV L ++G +S +G Sbjct: 162 ALDELEYTAKYNYDQVINNLKVLTTEQINVKLTVAEVSSSFLTELGVTYSDSGDP----- 216 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G FV++ DF+ + ++ +V+ A R LAEP L+ ISG+ ASF Sbjct: 217 -------GTFVNKLLDFTAQDIV------SVISASGDDKIGRVLAEPNLSVISGEQASFL 263 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342 +GG+ + + G T ++ +YGV L V I L + EVS + G Sbjct: 264 AGGE-IPIAIRDEDGIT-ISYKEYGVKLAMVAKVTDTENIRLTLIPEVSSIDESNKTTTG 321 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + +PS R R+A TTV L G + VLAGLL + ++ IP+L IPILGALF +S Sbjct: 322 LIS--VPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTKIPILGDIPILGALFSHSS 379 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430 NR +TE+ I AT LV PV + P Sbjct: 380 TNRSKTELIIVATVNLVDPVEQEQVKLP 407 >gi|238790280|ref|ZP_04634054.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii ATCC 33641] gi|238721630|gb|EEQ13296.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii ATCC 33641] Length = 463 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 108/401 (26%), Positives = 190/401 (47%), Gaps = 50/401 (12%) Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ-MLNLDILIER 118 L+V V V +S+P AD V + + +F + G+A++ + G D ++ + I+++ Sbjct: 48 LKVNAAVDTVFISNPDVADYEVIDEKQVVIFARENGRASLEIYGGDNNATLMTMSIIVDP 107 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL------------SET 166 + +++ + S+I ++ + VL G V +D++ + + +E Sbjct: 108 LLGNIKKEMAEEYPGSDIDIKKYGEGYVLTGTVPD-EDAREGIYMTVGQALGLKRKETEL 166 Query: 167 FLSQSGRNQYANSSSKK-------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + N S ++N L + +QV +K+T+ EV + + + Sbjct: 167 KIKPGSVNSIGGDDSNDTPIDFMQKVVFEGLVNRLKLPTTNQVNVKLTVVEVTKTFMDNV 226 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV-KGVLDRFSFETVLHALERATAIRTL 272 G S G + G F++ K D S ++++A++ + R L Sbjct: 227 GVDWSNAGLGA------------------GQFNLTKFRFDANSLNSLIYAIKNDSIARIL 268 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 AEP L+ +SG++A F GG+ V++S +++T ++GV L V S +I L + Sbjct: 269 AEPNLSVLSGETADFLVGGE--IPIVTTSMAGSTITYKEFGVKLVIAAKVESNNKIKLNL 326 Query: 333 QTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 E+S GD+ P R RKA TTVEL G + VL GLL ++ ++ GIP +S Sbjct: 327 SEEISSLDGQYALGDLNIPKLRSRKARTTVELGDGDSFVLGGLLNENEKESLSGIPFISD 386 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 IPILGALFR + RE TE+ + AT LVKP++ + P+ Sbjct: 387 IPILGALFRRTGAERERTELVVVATVNLVKPISFNKVVLPN 427 >gi|325518465|gb|EGC98164.1| pilus assembly protein [Burkholderia sp. TJI49] Length = 429 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 123/423 (29%), Positives = 189/423 (44%), Gaps = 86/423 (20%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQA 97 ++ +G ++IS G + +Q V V DP ADV++ ++ L K G Sbjct: 14 ELAVGTQRQISAGRS----------LQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGAT 63 Query: 98 NVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 NV+L G D + +++++ A L+ DS RV T VL G ++ Sbjct: 64 NVMLWERGRDEPTVWSVEVVDAAAHAVLD--------DSTPRVNAYGGTAVLRGTSASLD 115 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 +RAV + G+N + V++ +AG++ V + V + E R +LKQ+GF Sbjct: 116 AHERAVAV--------GKNMAGKGA---VIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGF 164 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--------------------S 255 F G F G FS GV + Sbjct: 165 NF------------FKQSNGFSF----GSFSPGGVQSYGGGSGPGTAGYIPTLGSPVASA 208 Query: 256 FETVLHA-----------LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V++A LE R LAEPTL A+SGQSASF +GG+ + + G+ Sbjct: 209 FNLVVNAAGHGIFGDLSLLEANNLARVLAEPTLVALSGQSASFLAGGEIPFPS-PQGLGS 267 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360 T++ YG+ L TPTVLSP RI L++ E S+ + ++ +P R+ADTTV Sbjct: 268 TAIQWKQYGIGLSLTPTVLSPQRIALKVAPESSQLDYVNSVTISGVSVPGITTRRADTTV 327 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL G + V+ GL+ +PLL +PI+G F+N + + + E+ I TP LV Sbjct: 328 ELGDGESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVA 387 Query: 421 PVA 423 P+A Sbjct: 388 PIA 390 >gi|330830432|ref|YP_004393384.1| protein transporter, outer membrane secretin (secretin) family [Aeromonas veronii B565] gi|328805568|gb|AEB50767.1| Protein transporter, outer bacterial membrane secretin (Secretin) family [Aeromonas veronii B565] Length = 465 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 114/412 (27%), Positives = 182/412 (44%), Gaps = 46/412 (11%) Query: 79 VVVHSP--RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 V VHSP + + ++G+ VG ++++ DG+ + + + + D+A LE R+ S + Sbjct: 49 VRVHSPSDQQLLIYGRKVGHTDLVVTALDGRTLGHYRVTVVADLAPLEQLARQHFPQSRL 108 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS-----------------QSGRN----- 174 +V+ G V + + + + E F Q+G Sbjct: 109 TFSESGGAIVVAGEVTSPLQAHEILSMVEGFAKGLQPQSVAQSTVMAPSPQAGNQDEGAA 168 Query: 175 -------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 QYAN V+N L +AG DQ+ + V I E++R +Q+G + S G Sbjct: 169 VAGGGSGQYAN-----VINQLRLAGSDQINISVRIVEMQRTTSEQLGLRWSAMGE----Y 219 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 G +F S G D ++ AL + + LAEP LTA SG++A+F Sbjct: 220 LQLGVSPGNRFPKPLERGSWTGKKDVVYINAIIDALVENSLVNVLAEPNLTAKSGEAATF 279 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGV 343 SGG+ + + G + +G+ L TPT+L RI L + EVS E + + Sbjct: 280 MSGGEFPFPVGNGDNGP-EIEFKKFGISLELTPTLLDNNRISLTVSPEVSTLSRENSVTI 338 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +P R+ TT+EL G + LAGL++ Q E +P L +IP L F ++ F Sbjct: 339 AGVVVPGIETRRTTTTIELADGQSFALAGLVRSHRNQNNEALPFLGEIPGLAPFFGSNSF 398 Query: 404 NREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 +E+E+ I AT LV+P + LS P DHY + FF + P Sbjct: 399 KNQESELVIIATARLVQPTSDPLSLSTPLDHYRAPSRFERLFFTDMGSTQSP 450 >gi|148974885|ref|ZP_01811865.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3] gi|145965394|gb|EDK30643.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3] Length = 441 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 115/388 (29%), Positives = 186/388 (47%), Gaps = 45/388 (11%) Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 + V V++ AD + + ++G G +VI+ G ++ N ++++ + + L+ Sbjct: 42 ISTVFVANQEIADYKIIDENKVVVYGVGQGTTSVIVYDRGGNEIYNAELVVNQSLRLLKQ 101 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----------- 174 TL D N+ V + D VVL G+V + + Q+ L L++ R Sbjct: 102 TLIARFPDENVVVSNIGDQVVLDGIVGSEEIKQKINRLVGEMLNKERRRAAYELKDADGE 161 Query: 175 -----QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 +Y A + +V+N L + +Q+ +K+T+AEV L ++G +S +G Sbjct: 162 ALDEIEYTAQYNYDQVINNLKVLTTEQINVKLTVAEVSSSFLTELGVTYSDSGEP----- 216 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G FV++ DF+ + ++ V+ A R LAEP L+ ISG+ ASF Sbjct: 217 -------GTFVNKLLDFTAQDIV------AVISASGDDKIGRVLAEPNLSVISGEQASFL 263 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342 +GG+ + V G T ++ +YGV L V I L + EVS + G Sbjct: 264 AGGE-IPIAVRDEDGIT-ISYKEYGVKLAMVAKVTDTENIRLTLIPEVSSIDESNKTTTG 321 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + +PS R R+A TTV L G + VLAGLL + ++ IP+L IPILGALF ++ Sbjct: 322 LIS--VPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTKIPILGDIPILGALFSHTS 379 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430 NR +TE+ I AT LV PV + P Sbjct: 380 TNRSKTELIIVATVNLVDPVEQEQVKLP 407 >gi|261251281|ref|ZP_05943855.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] gi|260938154|gb|EEX94142.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] Length = 441 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 113/383 (29%), Positives = 184/383 (48%), Gaps = 41/383 (10%) Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 V V++ AD + + ++G G +VI+ G ++ N ++++ + + L+ T+ Sbjct: 45 VFVANQQIADYKIIDDNKVVVYGVGQGSTSVIVYDRGGNEIYNAELVVNQSLRLLKQTII 104 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQY----------- 176 D N+ V V D VVL G+V + + Q+ L E + R+ Y Sbjct: 105 ARFPDENVVVSNVGDQVVLDGIVSSEEVKQKVYRLVGEMLKKERRRHTYELRDADGEEYD 164 Query: 177 -----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + + +V+N L + +Q+ +K+T+AEV L ++G +S +G Sbjct: 165 ELDYTSRFTYDQVINHLKVLTTEQINVKLTVAEVSSSFLSELGVSYSDSGEP-------- 216 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 GKFV++ DF+ + ++ +V+ A + LAEP L+ ISG+ ASF +GG Sbjct: 217 ----GKFVNKLLDFTAQDIV------SVISASGDDKIGQVLAEPNLSVISGEQASFLAGG 266 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG--D 347 + + V G S++ +YGV L V I L + EVS + + G Sbjct: 267 E-IPIAVRDEDG-ISISYKEYGVKLAMVAKVTDSENIRLTLIPEVSSIDESNKTSTGLIS 324 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P+ R R+A TTV L G + VLAGLL + ++ IP L IPILGALF ++ NR + Sbjct: 325 VPTLRTRRAQTTVHLKDGQSFVLAGLLTSEEREALTKIPFLGDIPILGALFSHTTTNRSK 384 Query: 408 TEIFIAATPFLVKPVAMRDLSRP 430 TE+ I AT LV PV + P Sbjct: 385 TELIIVATVNLVDPVESEQVKLP 407 >gi|262275469|ref|ZP_06053279.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Grimontia hollisae CIP 101886] gi|262220714|gb|EEY72029.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Grimontia hollisae CIP 101886] Length = 454 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 116/419 (27%), Positives = 197/419 (47%), Gaps = 52/419 (12%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A VIN+ G G S+ N VI V +SDP AD V + +FG+ Sbjct: 29 AGVINL-----GTGDARSLEFNAVI--------GTVFISDPDIADYQVIDSNKLVVFGRK 75 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 +G +I+ D + + + I++ + + +E L D ++ V + + VVL G+V T Sbjct: 76 LGTTTLIVFDEDSQTLSHRKIVVNQSLTKIEQILAIRYPDVDVSVLNMGEQVVLTGVVPT 135 Query: 154 IQDSQRAVELSETFLSQ---SGRNQYANSSSKK-------------VMNLLNIAGEDQVT 197 ++ + LS+ R Q+ S ++ ++N L + QV Sbjct: 136 QKEKNEIYAVVGELLSKKFVERRTQWKTSFDEEFDIDFMARRTYEGLVNNLEVTVTKQVN 195 Query: 198 LKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAA--DFGGKFVSEGGDFSVKGVLDR 253 +K+TIAEV ++ ++G + + +G + F FGG+ + Sbjct: 196 VKLTIAEVNSSLINELGIKWGTILEDGFAGNGQFFKGITGFGGRTTN------------- 242 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + A+ + L+EP ++ ISG++ASF GG+ + T G + ++G Sbjct: 243 --VAAYISAINDDNVGQVLSEPNVSVISGETASFLVGGE-IPITYRIDDGY-RIEYKEFG 298 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + L VL +I L + +VS + G D+PS++VR+A TT+EL G + VLA Sbjct: 299 IGLDLAAEVLRDDKIKLSVMPQVSSVDNQYGDTLLDIPSFKVRRARTTLELGDGDSFVLA 358 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 GLL + ++ IP + +PILGALFRN+ R +TE+ I AT LV+PV+ +++ P Sbjct: 359 GLLSSEDEEALSKIPFIGDVPILGALFRNTSTTRRKTELVIVATVSLVEPVSSANITIP 417 >gi|328952514|ref|YP_004369848.1| type II and III secretion system protein [Desulfobacca acetoxidans DSM 11109] gi|328452838|gb|AEB08667.1| type II and III secretion system protein [Desulfobacca acetoxidans DSM 11109] Length = 536 Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 129/508 (25%), Positives = 221/508 (43%), Gaps = 65/508 (12%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 YL R ++ FL +S +V + E N SD K +I I + + + Sbjct: 53 YLSRWLSIVLLFFLLTSGRAV-----LAE------NESDFA-SKAGRIVIAPHMSFVKRT 100 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD--- 119 + V++++P+ AD + +P +++ GK + + H +I++ D Sbjct: 101 QRPITRVVLANPSLADAELLTPTQLFIVGKVKQGVTSLTLWHGDNYAETYEIVVSFDDKV 160 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 ++ +RR + + ++VE + + V+L G V + D + ++++ F + Sbjct: 161 WNDVQAAIRRLVPRARVKVERLPEGVMLDGAVESQGDLDKVDKIAKFFFGE--------- 211 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---SSGPSKSFAADFGG 236 N++ + G QV L+V +AEV R +KQ+G + + PS + A G Sbjct: 212 ----CTNMITVMGSQQVQLEVKVAEVSRSGIKQLGLGFLLDKDYKVAVFPSGTAAGAMAG 267 Query: 237 ------KFVSEGGD------FSVKGVLDRFS--FETVLHA-----------LERATAIRT 271 ++ + D SV + +S F+ ++H L+ R Sbjct: 268 DRTTVSQWPTGSSDTKTSSLASVAALASPYSSAFQALVHGLNDDILGIVSLLQGQGLTRL 327 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA PTL +SGQ A F GG+ Y+TV STG +GV+L FTP VL I + Sbjct: 328 LASPTLVTMSGQEAHFLVGGEIPYQTV-GSTGTPGTDFKKFGVMLKFTPYVLGDETITIS 386 Query: 332 IQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + EVS P + +P R +T++L G +AGLL+DD + + IP Sbjct: 387 VDPEVSAPDYTLGTTTSSGTTVPGLITRTGHSTLQLKDGQVFAMAGLLRDDFRSTVKKIP 446 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL-SRPDDHYSVE-DDAKAFF 444 L +PILG LF + F R ETE+ I P +V+ + +++ + P + + D F Sbjct: 447 FLGNLPILGTLFTSKEFQRSETELMIIVKPKIVRALNPQEVPALPGSNMERDVSDLDFFI 506 Query: 445 FNRVNKIYGPKEA-SEVEGQNYKGAIGF 471 NR G A + ++ G IGF Sbjct: 507 LNRGWPKTGASSAPPPAKAPSFVGEIGF 534 >gi|238759122|ref|ZP_04620291.1| Type II/III secretion system protein [Yersinia aldovae ATCC 35236] gi|238702670|gb|EEP95218.1| Type II/III secretion system protein [Yersinia aldovae ATCC 35236] Length = 354 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 111/374 (29%), Positives = 185/374 (49%), Gaps = 44/374 (11%) Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + + + M+ +L+ I + ++ DSNI + + D+ +L G +S+ A Sbjct: 1 MFNRNNQPMIKTVVLVNNIINLVYQRIKVEYPDSNIEINKIGDSYILTGQA----ESEEA 56 Query: 161 VELSETFLSQSGRN--------QYANSSSK-KVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + + + ++ N QY N+ + ++N + + +QV +K+TIAEV +D + Sbjct: 57 KDTIASMVGEAVNNRREIKHKDQYLNNHNYLGIINKIKLPRPNQVNVKLTIAEVTKDFSE 116 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 IG S G S G SF +F+ F+ G+ T++HA+ + R Sbjct: 117 NIGIDWSSIGESVG---SF------QFLK----FNASGI------STLVHAINDDSIARI 157 Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP L+ +SG+SASF GG+ LY T +ST + YG+ L + V +I + Sbjct: 158 LAEPNLSVLSGESASFLVGGEIPLYNTTQNST---IIKYKPYGIKLSISAKVNEHSKIRI 214 Query: 331 RIQTEVSE-----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 ++ EVS V G NA P+ RKA TT+EL G + +L GL+ ++ + I Sbjct: 215 KVDEEVSNIGKRFNVEGGNA--YPTLETRKAATTLELADGESFILGGLITKSERESLKKI 272 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P + IPILGA FRN++ ++TE+ + AT LVKP+A ++ P D + + F F Sbjct: 273 PFIGDIPILGAFFRNAQTENKQTELVVVATVSLVKPLAGTEVELP-DFMNTSTLERLFNF 331 Query: 446 NRVNKIYGPKEASE 459 R+ ++ K A E Sbjct: 332 TRIIEVKRKKVAKE 345 >gi|323493934|ref|ZP_08099051.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546] gi|323311875|gb|EGA65022.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546] Length = 441 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 113/383 (29%), Positives = 184/383 (48%), Gaps = 41/383 (10%) Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 V V++ AD + + ++G G +VI+ G ++ N ++++ + + L+ T+ Sbjct: 45 VFVANQQIADYKIIDENKVVVYGVGQGSTSVIVYDRGGNEIYNAELVVNQSLRLLKQTII 104 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQY----------- 176 D N+ V V D VVL G+V + + Q+ L E + R+ Y Sbjct: 105 ARFPDENVVVSNVGDQVVLDGIVSSEEVKQKVYRLVGEMLKKERRRHTYELRDADGEEYD 164 Query: 177 -----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + + +V+N L + +Q+ +K+T+AEV L ++G +S +G Sbjct: 165 ELDYTSRFTYDQVINNLKVLTTEQINVKLTVAEVSSSFLTELGVTYSDSGEP-------- 216 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 GKFV++ DF+ + ++ +V+ A + LAEP L+ ISG+ ASF +GG Sbjct: 217 ----GKFVNKLLDFTAQDIV------SVISASGDDKIGQVLAEPNLSVISGEQASFLAGG 266 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG--D 347 + + V G S++ +YGV L V I L + EVS + + G Sbjct: 267 E-IPIAVRDEDG-ISISYKEYGVKLAMVAKVTDSENIRLTLIPEVSSIDESNKTSTGLIS 324 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P+ R R+A TTV L G + VLAGLL + ++ IP L IPILGALF ++ NR + Sbjct: 325 VPTLRTRRAQTTVHLKDGQSFVLAGLLTSEEREALTKIPFLGDIPILGALFSHTTTNRSK 384 Query: 408 TEIFIAATPFLVKPVAMRDLSRP 430 TE+ I AT LV PV + P Sbjct: 385 TELIIVATVNLVDPVESEQVKLP 407 >gi|258620803|ref|ZP_05715838.1| Flp pilus assembly protein [Vibrio mimicus VM573] gi|258587001|gb|EEW11715.1| Flp pilus assembly protein [Vibrio mimicus VM573] Length = 444 Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 121/401 (30%), Positives = 188/401 (46%), Gaps = 44/401 (10%) Query: 53 GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL 112 G K I L+ +D V V+D T AD + + ++G G +VI+ G ++ N Sbjct: 31 GAAKTINLKRQIDT--VFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGGNEIYNS 88 Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--- 169 ++++ + + L+ TL D +I V V D VVL G V + + + L L Sbjct: 89 EVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLKKNV 148 Query: 170 --------QSGRN------QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 ++G N QY A V+N L + +Q+ +K+TIAEV L ++G Sbjct: 149 SKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLSELG 208 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + G D G KF ++ DF+ + ++ ++ A + LAE Sbjct: 209 VSYGDIG---------GGDVG-KFYNKLLDFTAQDIV------AIIAASGNDDIGQVLAE 252 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L+ ISG++ASF GG+ T ++ +YG+ L V I L + Sbjct: 253 PNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLSLLP 310 Query: 335 EVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 EVS + VN D PS + RKA TTV+L G + VLAGLL + ++ IP+L Sbjct: 311 EVS-SLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPILG 369 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IPILGALF +++ +R++TE+ I AT LV PV + P Sbjct: 370 DIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLP 410 >gi|121534343|ref|ZP_01666167.1| type II and III secretion system protein [Thermosinus carboxydivorans Nor1] gi|121307113|gb|EAX48031.1| type II and III secretion system protein [Thermosinus carboxydivorans Nor1] Length = 408 Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 110/365 (30%), Positives = 182/365 (49%), Gaps = 32/365 (8%) Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 VQ V V++P ADV+V S + + GK G + + G+ +++ + D A + Sbjct: 44 VQRVAVANPEIADVLVVSGTEVLVVGKAPGLTTMHVWTEAGRATYEVEVGV--DDAKVAG 101 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 ++ + IRV V+ TV+L G V T Q RA +L+ + KV+ Sbjct: 102 EIKSILGYDGIRVSKVNRTVILEGAVDTQQQKARAEKLAAVY-------------GDKVV 148 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-SEGGD 244 +LL + QV ++ + E+ R +K++G + G+S+ +F FG + S+ GD Sbjct: 149 SLLEVLRPVQVKIEAKVIEINRQKIKELGIKW---GNSADTPGTFI--FGQSALNSKVGD 203 Query: 245 FSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 V G L ++ L AL ++ A + L++P + +SG AS GGQ + V+ Sbjct: 204 --VFGDLGGYADINAQLSALVKSGAAKVLSQPNVVTLSGDKASIMIGGQ-IPVPVAQDNN 260 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAG-DMPSYRVRKA 356 ++ DYG+ L P V G I R++ EVS I + AG ++P R+RKA Sbjct: 261 KITIEWKDYGIKLDIAPEVNGDGLIQSRVKAEVSSLDYNSANSIKLGAGMEIPPVRLRKA 320 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T + L SG T+ + GL+ + + +P+L +P+LG LFR++ F R ETE+ + TP Sbjct: 321 ETAIALSSGQTMAIGGLIATETSKDVVKVPMLGDLPVLGHLFRSTSFRRGETELLVLITP 380 Query: 417 FLVKP 421 LV P Sbjct: 381 SLVNP 385 >gi|262173894|ref|ZP_06041571.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus MB-451] gi|261891252|gb|EEY37239.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus MB-451] Length = 419 Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 121/401 (30%), Positives = 188/401 (46%), Gaps = 44/401 (10%) Query: 53 GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL 112 G K I L+ +D V V+D T AD + + ++G G +VI+ G ++ N Sbjct: 6 GAAKTINLKRQIDT--VFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGGNEIYNS 63 Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--- 169 ++++ + + L+ TL D +I V V D VVL G V + + + L L Sbjct: 64 EVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLKKNV 123 Query: 170 --------QSGRN------QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 ++G N QY A V+N L + +Q+ +K+TIAEV L ++G Sbjct: 124 SKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLSELG 183 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + G D G KF ++ DF+ + ++ ++ A + LAE Sbjct: 184 VSYGDIG---------GGDVG-KFYNKLLDFTAQDIV------AIIAASGNDDIGQVLAE 227 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L+ ISG++ASF GG+ T ++ +YG+ L V I L + Sbjct: 228 PNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLSLLP 285 Query: 335 EVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 EVS + VN D PS + RKA TTV+L G + VLAGLL + ++ IP+L Sbjct: 286 EVS-SLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPILG 344 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IPILGALF +++ +R++TE+ I AT LV PV + P Sbjct: 345 DIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLP 385 >gi|262164949|ref|ZP_06032687.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus VM223] gi|262027329|gb|EEY45996.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus VM223] Length = 444 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 121/401 (30%), Positives = 188/401 (46%), Gaps = 44/401 (10%) Query: 53 GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL 112 G K I L+ +D V V+D T AD + + ++G G +VI+ G ++ N Sbjct: 31 GAAKTINLKRQIDT--VFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGGNEIYNS 88 Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--- 169 ++++ + + L+ TL D +I V V D VVL G V + + + L L Sbjct: 89 EVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLKKNV 148 Query: 170 --------QSGRN------QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 ++G N QY A V+N L + +Q+ +K+TIAEV L ++G Sbjct: 149 SKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLSELG 208 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + G D G KF ++ DF+ + ++ ++ A + LAE Sbjct: 209 VSYGDIG---------GGDVG-KFYNKLLDFTAQDIV------AIIAASGNDDIGQVLAE 252 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L+ ISG++ASF GG+ T ++ +YG+ L V I L + Sbjct: 253 PNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLSLLP 310 Query: 335 EVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 EVS + VN D PS + RKA TTV+L G + VLAGLL + ++ IP+L Sbjct: 311 EVS-SLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPILG 369 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IPILGALF +++ +R++TE+ I AT LV PV + P Sbjct: 370 DIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLP 410 >gi|312882144|ref|ZP_07741893.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122] gi|309370190|gb|EFP97693.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122] Length = 456 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 107/394 (27%), Positives = 195/394 (49%), Gaps = 23/394 (5%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN +QV + + V +S+P AD V + T+ ++ VGQ+ +I+ G D +L Sbjct: 34 SITLNDGQHIQVNMPIGKVFISNPEVADYKVINENTLVVYANEVGQSRLIVYGTDSSVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ +++ + L+ D ++V+ + V + G+V + + L T L + Sbjct: 94 SDRIVVDLNLSEVRRQLKFHYPDVQVKVQSIGTQVAVSGVVDSEETRDDIYRLVATLLGR 153 Query: 171 SGRNQYANSSSKKVMNLLNIAGED--------QVTLKVTIAEVRRDILKQIGFQHSITGS 222 ++ N K N E+ +T + I ++ +Q+ + SI Sbjct: 154 EKTEKW-NQVEKLTFESENTRYEEPESMVFARNMTWEGIIERIKVTTTQQVNVKISIAHV 212 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTA 279 + ++ D+G + G F V D+F+ T++ AL + LAEP LT Sbjct: 213 TESFGQTVGIDWGS-IGARVGSF----VFDQFNAANLGTIISALGNDEIAQVLAEPNLTV 267 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 +SG+SASF +GG+ + + +V+ +G+ L+ T VLS +I +++ VSE Sbjct: 268 LSGESASFLAGGE--VPVIVLNDRNLTVSFKQFGIGLNLTAKVLSRDKIQMQLAPSVSEV 325 Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGA 396 + +P + +RKA TTVEL G + +L GL+ D +++++ +P++ IP+ GA Sbjct: 326 EGFVEFEGLKVPQFTLRKALTTVELSDGDSFILGGLMSSADFEEMQK-VPVIGDIPLFGA 384 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 FR ++ R+ TE+ I AT LV+PV D+ P Sbjct: 385 AFRKAKTERKRTELIIVATVNLVEPVRPNDIQVP 418 >gi|197118220|ref|YP_002138647.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem] gi|197087580|gb|ACH38851.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem] Length = 494 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 121/428 (28%), Positives = 200/428 (46%), Gaps = 63/428 (14%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 +N+ +++ + + V ++ P A++VV SP + + GK VG +I+ GK D Sbjct: 36 VNRSVLVDLHTKSERVSIASPDVAELVVISPTQLQINGKKVGSTTLIVWDTAGKTSF-FD 94 Query: 114 ILIERD-------IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + ++R+ I L+ +++ NI+V+ +DT+VL G Q +A++L++ Sbjct: 95 VRVKRNESVLESQIEALQDQIQQMAPKDNIKVDYANDTIVLSGTAANEQTVAKALQLAQA 154 Query: 167 FLSQSG---------------RNQYANSSSK------------KVMNLLNIAGEDQVTLK 199 + + +G R+ Y S ++ V+N + I QV L+ Sbjct: 155 YTAGNGSKAGAPATDPPLDTSRSSYQLSETQTGRQGGDADTVITVLNHVEIVEPQQVLLE 214 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK----GV----- 250 V +A+V + LK +G I G+S+ + G+ + D SV+ G+ Sbjct: 215 VKVAQVDKTALKSLGISAFIRGASAEGFSNLVGAPVGELAIKNPDGSVRSQATGIAGPIP 274 Query: 251 -------LDRF-----SFE----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +D + SF+ VL AL + LAEP L SGQ F +G + Sbjct: 275 GLANFTPIDSYQLGVSSFKAGIGAVLRALVTKNLAKVLAEPNLMVQSGQVGKFLAGSKIP 334 Query: 295 YKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSY 351 Y VS + ATS+ D GV L+F P VL G I L+I + GV A P Sbjct: 335 YSIVSGVGALSATSIQFIDVGVKLNFKPEVLENGLISLKIDPAEVSSITGVLAVNGYPII 394 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ T V+L G +++LAGLL+++ + IP+L IPILGALFR+++ + +E E+ Sbjct: 395 DTREVRTRVKLKDGESLILAGLLQEEAIKAMSKIPILGDIPILGALFRSTQDDIKEKELV 454 Query: 412 IAATPFLV 419 TP LV Sbjct: 455 FFITPKLV 462 >gi|78066131|ref|YP_368900.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383] gi|77966876|gb|ABB08256.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383] Length = 443 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 119/384 (30%), Positives = 178/384 (46%), Gaps = 51/384 (13%) Query: 66 VQDVLVSDPTKADV-VVHSPRT-MYLFGKNVGQANVILI--GHDGKQMLNLDILIERDIA 121 +Q V V DP+ ADV VV R + L K+ G NV++ GHD + N+ + Sbjct: 46 LQRVAVGDPSVADVMVVKGGRGGVLLIAKSAGATNVMIWERGHDEPTVYNVSVT------ 99 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 R + V T V+ G ++ QRAV ++T + G A++ Sbjct: 100 --SGAARALLDGGTSSVNTYGGTTVIGGASGSLDGHQRAVHAAKTVSGKDGTTIDAST-- 155 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------------------SITGSS 223 I+G++ V + V + E R +LKQ G SITGS Sbjct: 156 --------ISGKNVVQVDVRVVEFSRSVLKQAGLNFFKQSNGFSFGAFAPTGLTSITGSP 207 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + ++ + +S + V V + L LE R LA+PTL A+SGQ Sbjct: 208 GG-ALTYNTNV---PISSAFNLVVNSVSHGLFAD--LSILEANNLARVLAQPTLVALSGQ 261 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339 SA+F +GG+ + V S G S+ YGV L TPTVL+P RI L++ E S+ Sbjct: 262 SANFLAGGE-IPVPVPQSLGTISIEWKPYGVGLTVTPTVLNPRRIALKVAPESSQLDFVH 320 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 I +N +P+ R+ADTTVEL G + V+ GL+ + +P L +PI+GA F+ Sbjct: 321 SITINGVQVPALTTRRADTTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFK 380 Query: 400 NSRFNREETEIFIAATPFLVKPVA 423 N + + + E+ I TP LV P+A Sbjct: 381 NLSYQQSDKELVIIVTPHLVAPIA 404 >gi|152981036|ref|YP_001355006.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille] gi|151281113|gb|ABR89523.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille] Length = 429 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 109/392 (27%), Positives = 183/392 (46%), Gaps = 34/392 (8%) Query: 60 LQVPVDVQDVLVSDPTKADVVV-----HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114 L+ P D++ + V+DP AD+++ P ++ L GK G +V +G + Sbjct: 35 LKTPADLERIAVADPEVADILIIKGSNKRPGSIMLVGKKPGSTSVTAWQRNGPTKVWQ-- 92 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 ++ L+ + + +++ SD+ L G ++ V + G+ Sbjct: 93 ------VSVQSALQGLLPEEGAELQINSDSASLRGQSPSLLSHANTVAAGTQAV---GKE 143 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 ++ ++S+ +A V + V I E R++LK+ GF I + G + SF + Sbjct: 144 KFLDTST--------VATSGMVQIDVQIVEFSRNVLKEAGFDF-IFNQNRGATFSFGLNN 194 Query: 235 GGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 +S V +L S + +E+ R LA P+L A+SGQSASF +GG Sbjct: 195 FSTILSSTVQTPVSQAFNLLGSTSVNARVKLIEQNGLARVLARPSLIALSGQSASFLAGG 254 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD 347 + L S G T++ +G+ L TPTVLS RI L++ E S+ I N Sbjct: 255 E-LPVPQSGGLGTTTIIYKAFGIGLTVTPTVLSANRIALKVAPEASDLDYANAIVTNNMM 313 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P+ R+ +TT+EL G + V+ GL+ + +P L +PILG FR+ +++++E Sbjct: 314 IPAISTRRTETTLELGDGESFVIGGLVSRTTKSNVNKVPFLGDLPILGPFFRSMQYSQDE 373 Query: 408 TEIFIAATPFLVKPVAM-RDLSRPDDHYSVED 438 E+ I ATP LVKP+A L P D D Sbjct: 374 KELVIIATPHLVKPIAKGAQLPLPGDDKERRD 405 >gi|167562915|ref|ZP_02355831.1| type II/III secretion system protein [Burkholderia oklahomensis EO147] Length = 432 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 126/425 (29%), Positives = 197/425 (46%), Gaps = 62/425 (14%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPR-TMYL 89 A AA + ++ G +++S+G N VQ V V DP ADV VV R ++ L Sbjct: 11 ARAAEMGTIELATGAQRQVSVGRN----------VQRVAVGDPNVADVLVVKGGRGSVLL 60 Query: 90 FGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 K G ++++ G D + ++++ R + + V+ T V+ Sbjct: 61 VAKAAGSTSLMVWERGRDEPAVYTVNVV--------SGAARALLDGGSPSVKAYGGTAVV 112 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T+ RA+ L + + G V++ + G++ V + V + E R Sbjct: 113 SGSAATLDAHARALALGKGMAGKDG----------GVVDASTVGGKNVVQVDVRVVEFSR 162 Query: 208 DILKQIGFQH------------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 +LKQ G S+TG ++ PS S +A+ +S + V G Sbjct: 163 SVLKQAGLNFFKQNNGFTFGAFAPSGLASVTGGAT-PSMSVSANI---PISSAFNL-VVG 217 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 R F L LE R LA+PTL A+SGQSASF +GG+ + V S G S+ Sbjct: 218 SATRGLFAD-LSILEANNLARVLAQPTLVALSGQSASFLAGGE-IPVPVPQSLGTISIDW 275 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSG 365 YGV L TPTVLSP RI L++ E S+ I +N +P+ R+ADTTVEL G Sbjct: 276 KPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDG 335 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + V+ GL+ + + +P L +PI+G F++ + + + E+ I TP LV P+A + Sbjct: 336 ESFVIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-K 394 Query: 426 DLSRP 430 + S P Sbjct: 395 NASLP 399 >gi|167570105|ref|ZP_02362979.1| type II/III secretion system protein [Burkholderia oklahomensis C6786] Length = 434 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 126/425 (29%), Positives = 197/425 (46%), Gaps = 62/425 (14%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPR-TMYL 89 A AA + ++ G +++S+G N VQ V V DP ADV VV R ++ L Sbjct: 13 ARAAEMGTIELATGAQRQVSVGRN----------VQRVAVGDPNVADVLVVKGGRGSVLL 62 Query: 90 FGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 K G ++++ G D + ++++ R + + V+ T V+ Sbjct: 63 VAKAAGSTSLMVWERGRDEPAVYTVNVV--------SGAARALLDGGSPSVKAYGGTAVV 114 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T+ RA+ L + + G V++ + G++ V + V + E R Sbjct: 115 SGSAATLDAHARALALGKGMAGKDG----------GVVDASTVGGKNVVQVDVRVVEFSR 164 Query: 208 DILKQIGFQH------------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 +LKQ G S+TG ++ PS S +A+ +S + V G Sbjct: 165 SVLKQAGLNFFKQNNGFTFGAFAPSGLASVTGGAT-PSMSVSANIP---ISSAFNL-VVG 219 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 R F L LE R LA+PTL A+SGQSASF +GG+ + V S G S+ Sbjct: 220 SATRGLFAD-LSILEANNLARVLAQPTLVALSGQSASFLAGGE-IPVPVPQSLGTISIDW 277 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSG 365 YGV L TPTVLSP RI L++ E S+ I +N +P+ R+ADTTVEL G Sbjct: 278 KPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDG 337 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + V+ GL+ + + +P L +PI+G F++ + + + E+ I TP LV P+A + Sbjct: 338 ESFVIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-K 396 Query: 426 DLSRP 430 + S P Sbjct: 397 NASLP 401 >gi|161524905|ref|YP_001579917.1| type II and III secretion system protein [Burkholderia multivorans ATCC 17616] gi|189350345|ref|YP_001945973.1| pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|160342334|gb|ABX15420.1| type II and III secretion system protein [Burkholderia multivorans ATCC 17616] gi|189334367|dbj|BAG43437.1| pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 443 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 121/405 (29%), Positives = 185/405 (45%), Gaps = 58/405 (14%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVILI--G 103 ++++G + I P+ Q V V DP ADV++ ++ L K G NV+L G Sbjct: 28 ELAVGAQRQISAGRPL--QRVAVGDPAIADVLIMKGSRSSSVLLIAKAPGATNVMLWERG 85 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 D + +++++ A L+ DS RV T VL G ++ +RAV + Sbjct: 86 RDEPTVWSVEVVDAAAHAVLD--------DSAPRVNAYGGTAVLRGTSASLDAHERAVAV 137 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--HSITG 221 G+N + V++ +AG+ V + V + E R +LKQ+GF G Sbjct: 138 --------GKNMAGKGA---VIDRSTLAGKSVVQVDVRVVEFSRSVLKQVGFNFFKQSNG 186 Query: 222 SSSG---PS-------------KSFAADFGGKFVSEGG---DFSVKGVLDRFSFETVLHA 262 S G PS + G S + + +G+ S Sbjct: 187 FSFGSFLPSGVQSFGGGSGPGSAGYIPTLGSPVASAFNLVVNAAGRGIFGDLSL------ 240 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE R LAEPTL A+SGQSASF +GG+ + G+T++ YGV L TPTV Sbjct: 241 LEANNLARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTV 299 Query: 323 LSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 LSP RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 300 LSPQRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQT 359 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +PLL +PI+G F+N + + + E+ I TP LV P+A Sbjct: 360 MSNVSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIA 404 >gi|33593025|ref|NP_880669.1| putative type II secretion system protein [Bordetella pertussis Tohama I] gi|33563400|emb|CAE42276.1| putative type II secretion system protein [Bordetella pertussis Tohama I] gi|332382437|gb|AEE67284.1| putative type II secretion system protein [Bordetella pertussis CS] Length = 449 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 125/412 (30%), Positives = 194/412 (47%), Gaps = 44/412 (10%) Query: 69 VLVSDPTKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V ++DP ADV V +P + L G+ G + + + + + R + + Sbjct: 61 VAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVWSRGSR---DPQVWTVRVLPQV 117 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + L R +V+M D+ V+ GM + + + A E + A + K Sbjct: 118 QAALARRGVGGGAQVDMAGDSGVVTGMAPSAEAHRGAAEAAAA----------AAGGNDK 167 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGKFVS 240 V+++ I V ++V + E+ R ++K +G + SGP S D + Sbjct: 168 VVDMSQINTSGVVQVEVKVVELARSVMKDVGINFR---ADSGPWSGGVSLLPDL-----A 219 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 GG F + R F L L+ R LAEPTL A+SGQSASF +GG+ + VS+ Sbjct: 220 SGGMFGMLSYTSR-DFSASLALLQNNGMARVLAEPTLLAMSGQSASFLAGGE-IPIPVSA 277 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD-------MPSY 351 G TSV +G+ L TPTV+S RI L++ E SE G+++ D +P+ Sbjct: 278 GLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYANGISSIDSNNRITVIPAL 337 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R RKADT VEL G T V++GL+ + +PLL +PI+GA FRN ++++E+ E+ Sbjct: 338 RTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPIIGAFFRNVQYSQEDRELV 397 Query: 412 IAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 I TP LV+P+A L P V D A F + GP ++ G Sbjct: 398 IVVTPRLVRPIARGVTLPLPGARQEVSD---AGFNAWGYYLLGPMSGQQMPG 446 >gi|33596969|ref|NP_884612.1| putative type II secretion system protein [Bordetella parapertussis 12822] gi|33600811|ref|NP_888371.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] gi|33566420|emb|CAE37673.1| putative type II secretion system protein [Bordetella parapertussis] gi|33568411|emb|CAE32323.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] Length = 448 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 125/412 (30%), Positives = 194/412 (47%), Gaps = 44/412 (10%) Query: 69 VLVSDPTKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V ++DP ADV V +P + L G+ G + + + + + R + + Sbjct: 60 VAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVWSRGSR---DPQVWTVRVLPQV 116 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + L R +V+M D+ V+ GM + + + A E + A + K Sbjct: 117 QAALARRGVGGGAQVDMAGDSGVVTGMAPSAEAHRGAAEAAAA----------AAGGNDK 166 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGKFVS 240 V+++ I V ++V + E+ R ++K +G + SGP S D + Sbjct: 167 VVDMSQINTSGVVQVEVKVVELARSVMKDVGINFR---ADSGPWSGGVSLLPDL-----A 218 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 GG F + R F L L+ R LAEPTL A+SGQSASF +GG+ + VS+ Sbjct: 219 SGGMFGMLSYTSR-DFSASLALLQNNGMARVLAEPTLLAMSGQSASFLAGGE-IPIPVSA 276 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD-------MPSY 351 G TSV +G+ L TPTV+S RI L++ E SE G+++ D +P+ Sbjct: 277 GLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYANGISSIDSNNRITVIPAL 336 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R RKADT VEL G T V++GL+ + +PLL +PI+GA FRN ++++E+ E+ Sbjct: 337 RTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPIIGAFFRNVQYSQEDRELV 396 Query: 412 IAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 I TP LV+P+A L P V D A F + GP ++ G Sbjct: 397 IVVTPRLVRPIARGVTLPLPGARQEVSD---AGFNAWGYYLLGPMSGQQMPG 445 >gi|87308911|ref|ZP_01091049.1| probable type II secretion system protein [Blastopirellula marina DSM 3645] gi|87288254|gb|EAQ80150.1| probable type II secretion system protein [Blastopirellula marina DSM 3645] Length = 540 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 110/386 (28%), Positives = 173/386 (44%), Gaps = 46/386 (11%) Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI--GHDGK-QMLNLDILIERD------ 119 V +++P +V SP M + G VGQ + L DG L I++ D Sbjct: 84 VAITNPAVVEVNEFSPTEMEVIGSAVGQTTMTLWFNNADGTVSTLRYLIIVSNDDNRADL 143 Query: 120 -IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 L+ + S +++ ++D +++ G R DS+ A E+ Q+ NQ N Sbjct: 144 EYGKLQAHINEMFPYSRVQLFPIADKLIVRGQAR---DSKEAAEILAVIGDQA-VNQNGN 199 Query: 179 SS--------------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 S + ++NLL + GE QV LKV +AE+ R +++G S Sbjct: 200 ISGSGTVNVGSVARLPDAEDLETTSLINLLEVPGEQQVMLKVRVAELSRQAARELGMDFS 259 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + S F GG ++ +LD E + A + + LAEPTL Sbjct: 260 VMEES----------FSIAHTIMGGAGNLSAILDGGDVELFIRAFSSNGSAKILAEPTLM 309 Query: 279 AISGQSASFTSGGQHLYKTVSS--STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 +SGQSASF +GG+ T GA S + +G + F PTV+ I L + V Sbjct: 310 TLSGQSASFIAGGEFAVPTAVGVGGIGAVSTSFRGFGTQVQFMPTVMDKDMIRLSVAPSV 369 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 S ++ +P +R A TTV+L G + +AGL++D+ + + +PLL IP +GA Sbjct: 370 SSINQSLSVDGVPGLDIRGAVTTVDLREGQWLAIAGLIQDEQEASRSRLPLLGDIPYVGA 429 Query: 397 LFRNSRFNREETEIFIAATPFLVKPV 422 F + R ETE+ I +P LV P+ Sbjct: 430 AFGSQTTKRIETELVILVSPELVHPM 455 >gi|117618977|ref|YP_855991.1| protein transporter, outer bacterial membrane secretin (secretin) family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560384|gb|ABK37332.1| protein transporter, outer bacterial membrane secretin (secretin) family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 465 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 117/431 (27%), Positives = 189/431 (43%), Gaps = 50/431 (11%) Query: 79 VVVHSP--RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 V VHSP + + ++G+ VG+ ++++ DG+ + + + + D+A L+ R+ S + Sbjct: 49 VRVHSPSDQQLLIYGRKVGRTDLVVTALDGRTLGHYRVQVVADLAPLKQLARQHFPQSRL 108 Query: 137 RVEMVSDTVVLHGMV-----------------RTIQDSQRAVELSETFLSQSGRN----- 174 +V+ G V + IQ A+ + Q+G Sbjct: 109 SFSESGGAIVVAGEVTSPLQAHEILTMVEGFAKGIQPQGSALGTTAPVPPQTGSQDEGAA 168 Query: 175 -------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 QYA+ V+N L +AG DQ+ + V I E++R +Q+G + S G Sbjct: 169 VAGGGSGQYAH-----VINQLRLAGSDQINISVRIVEMQRTTSEQLGLRWSAMGEY---- 219 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 G +F S G D ++ AL + + LAEP LTA SG++A+F Sbjct: 220 LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIIDALVENSLVNVLAEPNLTAKSGEAATF 279 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGV 343 SGG+ + + G + +G+ L TPT+L RI L + EVS E + + Sbjct: 280 MSGGEFPFPVGNGDNGP-EIEFKKFGISLELTPTLLDNNRISLTVSPEVSTLSRENSVSI 338 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +P R+ TT+EL G + LAGL++ Q E +P L +IP L F ++ F Sbjct: 339 AGVVVPGIETRRTTTTIELADGQSFALAGLVRTHRNQSSEALPFLGEIPGLAPFFGSNGF 398 Query: 404 NREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 +E+E+ I AT LV+P + LS P DHY + FF + G E + Sbjct: 399 KNQESELVIIATARLVQPTSDPLSLSTPLDHYRAPSRFERLFFTDM----GSTERPGAQA 454 Query: 463 QNYKGAIGFIY 473 G G+ Y Sbjct: 455 TRLFGNYGYSY 465 >gi|323495637|ref|ZP_08100708.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp pilus assembly [Vibrio sinaloensis DSM 21326] gi|323319272|gb|EGA72212.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp pilus assembly [Vibrio sinaloensis DSM 21326] Length = 440 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 122/449 (27%), Positives = 207/449 (46%), Gaps = 70/449 (15%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 L+R FFT I ++SS S L V +G+G+ +I + Sbjct: 3 LKRIFFTF-CIAVWSSLASSQVL---------------VNLGEGEAKAITTKQ------- 39 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 ++ V +S+P AD V + +FGK VG +++ + +++ +++ + + H+ Sbjct: 40 -EIASVFISNPEIADYQVVDKNKLVVFGKKVGSVSLLAFDDNSNTIVSRKLVVNKSLIHI 98 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMV--RTIQDS--------------QRAVEL---S 164 + ++ + +I + + + VVL G V I+D +E + Sbjct: 99 QQQIQLRYPNISISLYNLEEQVVLAGKVPSEKIRDEINILVGELLEKEYEDHKIEWKIGT 158 Query: 165 ETF-LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 ET+ + R Y ++N + +A QV +K++IAEV + L++ G Q+ +G Sbjct: 159 ETYEMEFMTRRHYLG-----IVNNIEVATTKQVNVKLSIAEVSQSFLEEFGVQYGSSGQG 213 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 +G FV + +FS ++ +V+ AL T + LAEP L+ ISG+ Sbjct: 214 AGT-----------FVDQLVNFSASDIV------SVITALGDDTVGQVLAEPNLSVISGE 256 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVI 341 SA F GG+ V+ G T+V ++G+ L VL +I L + EVS + Sbjct: 257 SAHFLVGGE--LPVVTIIDGGTNVLYKEFGIRLEMMAKVLEDDKIKLSLLPEVSSIDSQY 314 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +P+ + R+A TTVEL G + VL GLL + ++ +P + +PILGALFR+S Sbjct: 315 QNERYSLPALKTRRARTTVELGDGQSFVLGGLLSTEDRESLRRVPFIGDVPILGALFRHS 374 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRP 430 R TE+ I AT LV PV + P Sbjct: 375 ETVRNRTELVIVATVNLVNPVNPSQIQLP 403 >gi|149178342|ref|ZP_01856934.1| probable type II secretion system protein [Planctomyces maris DSM 8797] gi|148842868|gb|EDL57239.1| probable type II secretion system protein [Planctomyces maris DSM 8797] Length = 546 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 115/437 (26%), Positives = 194/437 (44%), Gaps = 60/437 (13%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD--GKQMLNLDILI 116 IL++ +DV V ++DP+K +VV + + + GK+ G + L D Q+L++ + + Sbjct: 77 ILKMKMDVFRVAIADPSKIEVVAFGSQEVEVIGKDTGTTTMTLWLGDEANPQILSVQVKV 136 Query: 117 ERD----------IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL--- 163 E D + + F +S I++ +D +++ G R D Q AV++ Sbjct: 137 EGDNSIEDLRRMEYGEFQKMINEFFPNSKIQLVPFADKLIVRGQAR---DEQEAVQIITI 193 Query: 164 -----------------SETFLSQSGRNQYANSS---SKKVMNLLNIAGEDQVTLKVTIA 203 F + + + + V+++L + GE Q+ LKV IA Sbjct: 194 IRARSGSGGGQGGGGGGGSLFADGAAADPFPGGAMLPEATVIDMLKVPGEKQIMLKVRIA 253 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------GKFVSEGGDFSVKGVLDRFS 255 ++ R + T S++ ++S DFG + + GG V Sbjct: 254 QIDRSAAR--------TASTNIIAQS--GDFGWAQLFTGVAQQLGNGGTGLVTASFTSSD 303 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HDYG 313 + + AL + + LAEP L ISG++A+F SGG+ TV GA + TT +G Sbjct: 304 VDVFISALAQNGYAKILAEPNLVTISGRTANFISGGEFAVPTVVGVGGAQAATTTFKGFG 363 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 L F PTVL RI L++ S + +G + V+ TTV+L G + +AGL Sbjct: 364 TQLSFLPTVLDKDRIRLQVSPSFSTVNPALTSGGVLGVNVQAVTTTVDLREGQVLAIAGL 423 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR--PD 431 L++ + +P + IP++G LF N +R+ETE+ I +P LV P+ D P Sbjct: 424 LQEQQRGDLNRVPFIGDIPLVGPLFSNKGVSRDETELIILISPELVHPMEPEDAPTVLPG 483 Query: 432 DHYSVEDDAKAFFFNRV 448 + D FF N + Sbjct: 484 MEVTEPGDVDFFFMNNI 500 >gi|302391029|ref|YP_003826849.1| type II and III secretion system protein [Acetohalobium arabaticum DSM 5501] gi|302203106|gb|ADL11784.1| type II and III secretion system protein [Acetohalobium arabaticum DSM 5501] Length = 414 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 108/381 (28%), Positives = 180/381 (47%), Gaps = 35/381 (9%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 K + +G K +L+V VD++ V+DP AD+V S + + GK+ G + L G Sbjct: 32 KILQLGTGKSELLKV-VDLERAAVADPEVADIVTISQEELLINGKSEGTTTLHLWDQKGH 90 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +++ E A + ++ I ++V V + ++L G VR QR +++ F Sbjct: 91 RSYQVEVYKEE--ARVIKQIKELIGTDTVKVAKVEENIILSGKVRDQTQLQRVKKIAGVF 148 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 +KV+N L + QV L + E+ + + +++GF T +SG Sbjct: 149 -------------GEKVINELQVTNSLQVLLAAQVFEIDKAVSEELGFDWYST--NSGGV 193 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 +S A G S F + + T L AL + LA+P L SGQ ASF Sbjct: 194 ESGTATLGETTTSR---FGIGHYERLYQLRTKLKALIEDGKAKLLAKPKLVTKSGQKASF 250 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIG 342 GG+ T SS G +V +YGV PTV G++ + +VS+ V Sbjct: 251 NVGGEIPVVTADSS-GEQTVVWKNYGVQFEVEPTVTPTGKLETYLHPKVSQLDWANAVDY 309 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK----DDIQQLKEGIPLLSKIPILGALF 398 N+G +P+ + + T V + G + + GLL+ +DI++ IPLLS++PILG LF Sbjct: 310 GNSGQLPAIKSSEVKTQVVIKDGAALAIGGLLQQYRSEDIKR----IPLLSQLPILGELF 365 Query: 399 RNSRFNREETEIFIAATPFLV 419 ++ F E++E+ I TP ++ Sbjct: 366 KSKSFREEKSELIILVTPKII 386 >gi|91775995|ref|YP_545751.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91709982|gb|ABE49910.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 453 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 122/435 (28%), Positives = 201/435 (46%), Gaps = 53/435 (12%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + ++I + + + + + V +Q V V++P V + SP+TM + K VG + L Sbjct: 26 QAEEIMVSMGQQRLYEHTVTLQRVAVANPEVLAVTLTSPKTMMIVPKAVGATEISLWDSQ 85 Query: 106 GKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 Q L + + +A LE + + ++VE + + L G R++++ RA+E Sbjct: 86 SVQPSRVLQVSVTPSLA-LEGQGLKAADAAGLQVEAAGNGLALSGEARSLEEHARALE-- 142 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITG 221 S K+ L++ + V + + + EV R + GF Sbjct: 143 --------------SLQKERQGALDVTSSEFDSHVQIDIKVVEVSRQNAMRFGFLMGKNN 188 Query: 222 SSSGPSKSFAAD---FGGKFVSEGG-DFSVKG----VLDRFS---------FETVLHALE 264 S+S A F G GG DFS VL+ F+ L LE Sbjct: 189 SASRDGFGIVASPNSFSGVEAGSGGFDFSSTSGFLPVLNAFNVVFGNHGSGLLGTLSILE 248 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVLHFTPTV 322 TLAEP+L+AISGQ+A+F +GG+ +T S A ++ +YGV L TPT+ Sbjct: 249 GNGFAYTLAEPSLSAISGQTATFLAGGEFPVPIRTGGGSDSAITIRYKEYGVRLMLTPTI 308 Query: 323 LSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 LS RI L++ EVSE + +P +VR+ +T+V L +G + V++G++ + Sbjct: 309 LSGERIFLKVAPEVSELDFANAVQTGGVAVPGLKVRRTETSVSLGNGESFVISGMVSRNT 368 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD------D 432 + +P L IPI+GA F + RF+RE+ E+ + TP LV+P+A R+ P Sbjct: 369 INNIDKVPGLGNIPIIGAFFSSKRFDREDKELLMVVTPRLVRPIA-RNAELPALPGSELK 427 Query: 433 HYSVEDDAKAFFFNR 447 HY + FF +R Sbjct: 428 HY--KPSFSEFFLSR 440 >gi|253701800|ref|YP_003022989.1| type II and III secretion system protein [Geobacter sp. M21] gi|251776650|gb|ACT19231.1| type II and III secretion system protein [Geobacter sp. M21] Length = 451 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 119/406 (29%), Positives = 187/406 (46%), Gaps = 44/406 (10%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF-GKNVGQANVILIGHD 105 G ++ +N+ ++L + + V ++D DV R L GK +G N+I+ + Sbjct: 29 GVPTTVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGSTNLIVWEEN 88 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + D+ + D +E +R + + +I V+ DTVVL G V ++A E+++ Sbjct: 89 NENPTFFDVRVVGDREAIESQIRDYAPNDDISVQYAQDTVVLSGKVANEMTGKKAEEIAK 148 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS- 224 + S KV+N + + QV L+V +A+V R LK++G + G ++ Sbjct: 149 AY-------------SAKVLNHITVDEPQQVLLQVKVAQVDRTSLKRLGISAMVKGRTAE 195 Query: 225 -------GPS--KSFAADFGGKFVS---EGGDFSVKGV-----LDRFS---------FET 258 PS S +F S G S+ G+ LD F+ Sbjct: 196 GFMNLVGAPSGTSSVTNSSATRFTSTEASGIAGSIPGLGSFDPLDAFNVGVSYFPAGIGA 255 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVL 316 VL AL + LAEP L SG+ +F +G + Y + S+ GA+ S+ GV L Sbjct: 256 VLQALSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIIFETVGVKL 315 Query: 317 HFTPTVLSPGRIGLRIQ-TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 F P VL G I L+I EVS + P R T VEL G +++LAGLL+ Sbjct: 316 KFKPQVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGESLILAGLLQ 375 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 ++ + IPLL IPILGALFR+S+ + E ++ TP +VKP Sbjct: 376 EEQIKTMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVKP 421 >gi|171317113|ref|ZP_02906316.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] gi|171097747|gb|EDT42574.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] Length = 443 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 120/409 (29%), Positives = 186/409 (45%), Gaps = 58/409 (14%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQA 97 ++ +G ++IS G +Q V V DP ADV++ ++ L K G Sbjct: 28 ELAVGAQRQISAGRT----------LQRVAVGDPAVADVLIMKGSRSGSVLLTAKAPGAT 77 Query: 98 NVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 NV+L G D + +++++ + + + S RV T VL G ++ Sbjct: 78 NVMLWARGRDEPTVWSVEVV--------DAAAQAVLDGSTPRVNAYGGTAVLQGTAASLD 129 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 RA S G+N S+ V++ + G++ V + V + E R +LKQ+GF Sbjct: 130 AHARA--------SAVGKNM---SAKGNVIDRSTVVGKNVVQVDVRVVEFSRSVLKQVGF 178 Query: 216 QH-------SITGSSSGPSKSFAADFG----------GKFVSEGGDFSVKGVLDRFSFET 258 S S G +S++ G G V+ + V R F Sbjct: 179 NFFKQSNGFSFGSFSPGGVQSYSGGAGPGTGGYVPTLGSPVASAFNLVVNAA-GRGIFAD 237 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 L LE R LAEPTL A+SGQSASF +GG+ + G+T++ YGV L Sbjct: 238 -LSLLEANNLARVLAEPTLVALSGQSASFLAGGE-IPVPAPQGLGSTAIQWKQYGVGLTL 295 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTVL+P RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 296 TPTVLNPNRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLI 355 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +PLL +PI+G F+N + + + E+ I TP LV P+A Sbjct: 356 DRQTMSNVSKVPLLGDLPIIGTFFKNLSYQQNDKELLIIVTPHLVAPIA 404 >gi|254245567|ref|ZP_04938888.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia PC184] gi|124870343|gb|EAY62059.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia PC184] Length = 443 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 120/423 (28%), Positives = 183/423 (43%), Gaps = 86/423 (20%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQA 97 ++ +G ++IS G +Q V V DP ADV++ ++ L K G Sbjct: 28 ELAVGAQRQISAGRT----------LQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGAT 77 Query: 98 NVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 NV+L G D + N++++ + + + + RV T VL G +++ Sbjct: 78 NVMLWERGRDEPTIWNVEVV--------DAAAQAVLDGAAPRVNAYGGTAVLQGSAASLE 129 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 RA + G+N S V++ + G+ V + V + E R +LKQ+GF Sbjct: 130 AHSRAAAV--------GKNM---SGKGVVIDRSTVPGKSVVQVDVRVVEFSRSVLKQVGF 178 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--------------------S 255 F G F G FS GV + Sbjct: 179 NF------------FKQSNGFSF----GSFSPGGVQSYSGGSGPGTGGYVPTLGSPVASA 222 Query: 256 FETVLHA-----------LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V++A LE R LAEPTL A+SGQSASF +GG+ + G+ Sbjct: 223 FNLVVNAAGRGIFADLSLLEANNLARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGS 281 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360 T++ YGV L TPTVLSP RI L++ E S+ + ++ +P R+ADTTV Sbjct: 282 TAIQWKQYGVGLSLTPTVLSPSRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTV 341 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL G + V+ GL+ +PLL +PI+G F+N + + + E+ I TP LV Sbjct: 342 ELGDGESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFFKNLSYQQNDKELLIIVTPHLVA 401 Query: 421 PVA 423 P+A Sbjct: 402 PIA 404 >gi|325108090|ref|YP_004269158.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] gi|324968358|gb|ADY59136.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] Length = 714 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 115/394 (29%), Positives = 184/394 (46%), Gaps = 48/394 (12%) Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 DP V +P + + + G ++L+ K +++ +E D+ +L+ + RF Sbjct: 95 DPAVLTVSALTPHRVRIQAVSAGVTTLVLVDEFDK-TYTIEVFVEGDVRYLQSYIDRFFP 153 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 DS+++ V D+VVL G+V + E++E F KV+N + Sbjct: 154 DSSVKAVKVKDSVVLRGVVADPSHISQITEVAEQFF-------------PKVINHMQFGA 200 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS-ITGS---SSGPSKSFAADFGGKF-------VSE 241 +QV L+V I E +R ++Q+GF S + GS SS P S ++ G +S Sbjct: 201 ANQVRLQVRIMEAQRSRIRQLGFNWSFLNGSGYVSSNPG-SLSSPLGANLTPGQTPGLSY 259 Query: 242 GG----DFSVK-GVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 GG D S+ GV++ S F L AL++ +R L E ++ A SG+ AS SGG+ Sbjct: 260 GGAGLSDSSISFGVVNANSVFRGFLEALKQEGLLRILVETSVVADSGRPASLLSGGE-FP 318 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PS 350 V + G SV ++GV L P VL G++ L I E SE NA + P+ Sbjct: 319 ILVPQALGTLSVEWKEFGVKLEAVPIVLGQGQVILEIAPEFSERDFA-NAAQLDNTTVPA 377 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+A+T V + G T+++ GL+ + +P L ++P +GA FR R++ ETE+ Sbjct: 378 ITTRRANTQVRMKFGQTLMIGGLIATRYTAETDKVPFLGELPGIGAAFRRVRYDENETEL 437 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 I TP V P+ D + V D F Sbjct: 438 IILVTPEYVAPL---------DPHQVPDGGPGQF 462 >gi|163857691|ref|YP_001631989.1| putative Flp pilus assembly secretin [Bordetella petrii DSM 12804] gi|163261419|emb|CAP43721.1| putative Flp pilus assembly secretin [Bordetella petrii] Length = 464 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 124/444 (27%), Positives = 201/444 (45%), Gaps = 58/444 (13%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV-----HSPRTMYLFGKNVGQANVILI 102 + IS+ + +L +P + V+DP ADV V P + L GK+ G V + Sbjct: 47 QDISLAVKGQQLLPLPGTPTRIAVADPDVADVKVLPAAAGRPAAVMLIGKSAGTTQVQVW 106 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 + + + + + + L+R V++ V+ G + Q +V Sbjct: 107 ARNSRSPATWTVHVTGPV---QAELQRRGQAGGANVDVAGTHAVVSGHAPSALSHQNSVA 163 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + + K V+++ V ++V + EV R ++KQ+G S+TG+ Sbjct: 164 AAAA-----------SVGDKNVVDVATAGSGGVVQVEVKVVEVSRSVMKQVGL--SMTGN 210 Query: 223 SSGPSKSFAADFGGKFVSEG----GDFSVKGVL--------DRFSFETVLHALERATAIR 270 + G FG + +G G + +GVL D F L L+ R Sbjct: 211 AGG------WGFGSRTSPDGFSTPGTLNPRGVLSDGFNLLFDSNHFGATLRMLQSNGMAR 264 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEPTL A+SGQSASF +GG+ + S G +V +G+ L TPTVLS RI L Sbjct: 265 VLAEPTLVALSGQSASFLAGGE-IPIPESGGLGTQNVVFKPFGIGLTVTPTVLSRDRIAL 323 Query: 331 RIQTEVSE-------PVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 ++ E SE P++ G A +P+ R R+ADT +EL G + V++GL+ + Sbjct: 324 KVAPEASELDYVNGIPILNGETATLIPALRTRRADTMIELGDGESFVISGLVSRQTKASV 383 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVED--- 438 +P L ++PI+GA FR +++EE E+ I TP LV+P+A L P + D Sbjct: 384 NKVPFLGELPIIGAFFRGIEYSQEEHELVIVVTPRLVRPIARGVALPLPGERQERPDSIT 443 Query: 439 DAKAFFFNRVNKIYGPKEASEVEG 462 +A ++ + GP +V G Sbjct: 444 NAWGYY------LMGPAGGQQVPG 461 >gi|116626779|ref|YP_828935.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116229941|gb|ABJ88650.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 471 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 106/393 (26%), Positives = 189/393 (48%), Gaps = 44/393 (11%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 D+ V +S+P AD VV SPR + + K G+A ++ + G + +I + +D + Sbjct: 48 DITKVAISEPKIADAVVISPREVMVNAKGPGRATLV-VWETGLDPVRYEIAVTKDTTEWD 106 Query: 125 MTLRRFIADSNIRVEMVS--DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 M + I + + + + DT+VL G+V++ D++R +++T +K Sbjct: 107 MFTKSMIDSAGVPIHITGSGDTIVLSGVVKSADDAKRLAGMAQT-------------RAK 153 Query: 183 KVMNLLNI---AGEDQVTLKVTIAEVRRDILKQIGFQ-----HSITGSSSGPSKSFAADF 234 V+NLL A Q+ L+V A + R L QIGF G+SS ++ F++ Sbjct: 154 TVINLLQAPPPAEPRQILLQVKFAAIDRVALTQIGFNLFSTNDKFIGASS--TEQFSSPR 211 Query: 235 GGKFVSEGGDFSVK--GVLDRFSFETVLH------ALERATAIRTLAEPTLTAISGQSAS 286 + G +V +L+ F+F L+ ALE ++ LAEP L + G+ A+ Sbjct: 212 FSQLQPTGTGQTVNFSDLLNLFAFRPDLNIGATIKALEERNLLQILAEPNLLCLDGKEAT 271 Query: 287 FTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-- 338 F +GG Y T++++ +V +GV L F PTV G I L++Q EVS Sbjct: 272 FLAGGTFPYPTITTTPTGGATAPVITVQFKPFGVKLDFQPTVTPQGSIDLKVQPEVSSLD 331 Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + + +P+ R+A+T + L G + +AGL+ + + + +P L +P+LG Sbjct: 332 YANAVTLQGFVIPALSQRRAETEIILKDGESFAIAGLIDNRVIETLSKVPGLGDLPVLGK 391 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 +FR+ + E+ + TP VKP+ + ++ Sbjct: 392 IFRSRSTQKSADELLVVVTPHFVKPLTPEERAK 424 >gi|197117446|ref|YP_002137873.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem] gi|197086806|gb|ACH38077.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem] Length = 451 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 122/437 (27%), Positives = 199/437 (45%), Gaps = 47/437 (10%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF-GKNVGQANVILIGHD 105 G ++ +N+ ++L + + V ++D DV R L GK +G N+I+ + Sbjct: 29 GVPTTVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGSTNLIVWEEN 88 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + D+ + D +E +R + +I V+ DTV+L G V ++A E+++ Sbjct: 89 NDKPTFFDVRVVGDREAIESQIRDYAPKDDISVQYAQDTVILSGKVANEMTGKKAEEIAK 148 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------- 217 + S KV+N + + QV L+V +A+V R LK++G Sbjct: 149 AY-------------SAKVLNHITVDEPQQVLLQVKVAQVDRTSLKRLGLSAIVKGRTAE 195 Query: 218 ---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--------LDRFS---------FE 257 ++ G+ SG S++ + +F S G+ V + L+ F+ Sbjct: 196 GFTNLVGAPSGTSRNTEST-PTRFTSTEGNGIVGNIPGIGGFDPLNAFNVGVSYFPAGIG 254 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVV 315 VL AL + LAEP L SG+ +F +G + Y + S+ GA+ S+ GV Sbjct: 255 AVLQALSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIVFETVGVK 314 Query: 316 LHFTPTVLSPGRIGLRIQ-TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L F P VL G I L+I EVS + P R T VEL G ++VLAGLL Sbjct: 315 LKFKPQVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGESLVLAGLL 374 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR-PDDH 433 +++ + IPLL IPILGALFR+S+ + E ++ TP +VKP ++ P D Sbjct: 375 QEEQIKNMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVKPTPAGVATKLPTDA 434 Query: 434 YSVEDDAKAFFFNRVNK 450 + E++ + R K Sbjct: 435 VTPEEEKGYDWIPRGGK 451 >gi|330816715|ref|YP_004360420.1| Type II and III secretion system protein [Burkholderia gladioli BSR3] gi|327369108|gb|AEA60464.1| Type II and III secretion system protein [Burkholderia gladioli BSR3] Length = 477 Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 121/429 (28%), Positives = 188/429 (43%), Gaps = 67/429 (15%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPRTMYLFGKNVGQANV 99 D+ +G ++I+ G N +Q V V DP AD+ ++ + L GK+ G NV Sbjct: 31 DLAVGAQRQIASGRN----------LQRVAVGDPAVADILIIKGGGGVMLIGKSAGTTNV 80 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 +L + + + AH + D+ RV+ DT V+ G T++ QR Sbjct: 81 MLWERGRSEPTVYTVHVTSGAAH------ALLNDATPRVDTYGDTTVISGSANTLEAHQR 134 Query: 160 AVELSETFLSQSGRNQYA-------------------------NSSSKKVMNLLNIAGED 194 AV+++ + Q + +S+ V++ I+G + Sbjct: 135 AVDVANAAAAARAAAQQSSSAGGGQGKGQAVGRGGGNGGGGGGDSAGPNVVDASTISGRN 194 Query: 195 QVTLKVTIAEVRRDILKQIGFQ---------------HSITGSSSGPSKSFAADFGGKFV 239 V + V + E R +KQ G S+ SS PS Sbjct: 195 VVQVDVRVVEFSRSAIKQAGLNLFKSNNGFSFGSFAPSSLQSSSYNPSAGLTVTAVSPIT 254 Query: 240 SEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 S F+ V G R L LE+ R LA+PTL A+SGQSASF +GG+ + V Sbjct: 255 SA---FNLVVGSTSR-GIAGNLSVLEQNNLARILAQPTLVALSGQSASFLAGGE-IPVPV 309 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVR 354 S G S+ YG+ L TPTVL P RI L++ E S+ I +N+ +P+ R Sbjct: 310 PQSLGTISIEYKPYGIGLTVTPTVLGPNRIALKVAPEASQLDFLNAITINSITVPALTTR 369 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +ADTTVEL G + V+ GL+ + +P L +PI+GA F++ + + + E+ Sbjct: 370 RADTTVELGDGESYVIGGLVDRETTSNVSKVPFLGDLPIIGAFFKSLNYQQNDKELVFVV 429 Query: 415 TPFLVKPVA 423 TP LV P+A Sbjct: 430 TPHLVSPIA 438 >gi|154250526|ref|YP_001411350.1| type II and III secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154476|gb|ABS61693.1| type II and III secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 461 Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 115/393 (29%), Positives = 188/393 (47%), Gaps = 37/393 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 ISIG +++ L VD + +++P+ DV V S R + + G++ G + + I G Sbjct: 46 ISIGGQRILKLGQTVD--RIAIANPSIVDVKVISSRELRILGQSEGTTD-LDIWFAGGAS 102 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + +++ DI L+ L R A ++++ VVL G V +++ QRA E++ ++L Sbjct: 103 KSYYVVVGADITGLQSELARDPALADVKATETGKGVVLKGQVYSLEAQQRAREIARSYLG 162 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQ---HSITGSSS 224 K ++L +A V ++V A V LK +G FQ +S ++ Sbjct: 163 ------------KDAGDMLTVADRRMVAVEVRFAAVSTSTLKALGLNFQSLDNSFQFAAI 210 Query: 225 GPSKSFAADFG---GKFVSEGGDFSVKGVLDRF------SFETVLHALERATAIRTLAEP 275 GP+ S + FG G + + + F + V+ AL A + LAEP Sbjct: 211 GPNAS--SSFGYTPGAGLDPDTSLPLSQAFNLFLAWPGSNLLGVISALSSANLAQLLAEP 268 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQ 333 TL SG+ A F +GG+ S G +VT +GV L TVL RI L++ Sbjct: 269 TLLVRSGEDADFLAGGEIPIPVPQSGVGNGTVTIEYKKFGVQLGVAATVLDNDRIVLKVS 328 Query: 334 TEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 EVSE + V +P+ R R TT+EL G + VLAGL+ +++ IP + Sbjct: 329 PEVSELDYTNALVVQGFRIPALRTRSTRTTIELGDGQSFVLAGLMYSTSGNIEDRIPGIG 388 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 ++P++G F+ ++ RE E+ I ATP LV P+ Sbjct: 389 ELPVIGTFFKRTQNARERQELIIVATPRLVSPM 421 >gi|167587316|ref|ZP_02379704.1| type II and III secretion system protein [Burkholderia ubonensis Bu] Length = 477 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 120/434 (27%), Positives = 192/434 (44%), Gaps = 77/434 (17%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQA 97 D+ +G ++I+ G +Q V V DP+ ADV++ + L K G Sbjct: 31 DLAVGSQRQIAAGRA----------LQRVAVGDPSVADVLIMKGSRAGAVLLVAKAPGST 80 Query: 98 NVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 NV+L G D + N++++ A L+ S + D VL G ++ Sbjct: 81 NVMLWERGRDEPMVWNVNVVDAAAHAVLD--------SSTPDAKAYGDVAVLSGSAASLD 132 Query: 156 DSQRAVELSETFLSQ----------------SGRNQYANSSS-------KKVMNLLNIAG 192 +RA + + + +G+ S + V++ + G Sbjct: 133 AHERAAAIGQHMADKGGAAAGGNWGAGDAGATGKRGGGASGTLGKAGKGGAVIDASTVGG 192 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQ------------------HSITGSSSGPSKSFAADF 234 + V + V + E R +LK+ G SITG+++ +F A Sbjct: 193 RNTVQVDVRVVEFSRSVLKEAGLNFFKQSNGFAFGAFTAGGLQSITGAAT---SAFQATA 249 Query: 235 GGKFVSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G S F+ V R F L LE R LA+PTL A+SGQSASF +GG+ Sbjct: 250 GIPVASA---FNLVANSAGRGIFAN-LSILEANNLARVLAQPTLVALSGQSASFLAGGE- 304 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMP 349 + V + G+T++ YGV L TPTVLSP RI L++ E S+ + +N+ +P Sbjct: 305 IPVPVPQALGSTAIQWKQYGVGLTLTPTVLSPRRIALKVAPESSQLDFLHGVTINSVAVP 364 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + R+ADTTVEL G + V+ GL+ + +P+L +PI+GA F+ + + + E Sbjct: 365 AITTRRADTTVELGDGESFVIGGLIDRETMSNVNKVPVLGDLPIIGAFFKTLNYQQNDKE 424 Query: 410 IFIAATPFLVKPVA 423 + I TP LV P+A Sbjct: 425 LVIIVTPHLVAPIA 438 >gi|83718419|ref|YP_443059.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|167582062|ref|ZP_02374936.1| type II/III secretion system protein [Burkholderia thailandensis TXDOH] gi|167620224|ref|ZP_02388855.1| type II/III secretion system protein [Burkholderia thailandensis Bt4] gi|257139289|ref|ZP_05587551.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|83652244|gb|ABC36307.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 441 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 127/425 (29%), Positives = 195/425 (45%), Gaps = 62/425 (14%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV--HSPRTMYL 89 A AA + ++ G ++I++G VQ V + DP+ ADVVV + L Sbjct: 20 ARAAEMGTIELATGAQRQIAVGRG----------VQRVAIGDPSVADVVVIKGGRGGVLL 69 Query: 90 FGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 K G N+++ G D + +++ R + + V+ + T V+ Sbjct: 70 VAKAAGSTNLMVWERGRDEPSVYTVNVA--------SGAARALLDGGSPSVKAYNGTAVV 121 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T+ RA+ + + + G V++ + G++ V + V + E R Sbjct: 122 SGSAATLDAHARALAVGKGMAGKDG----------GVVDASTVGGKNVVQVDVRVVEFSR 171 Query: 208 DILKQIG---FQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------VKG 249 +LKQ G F+ S G + G SFA G V+ GG S V G Sbjct: 172 SVLKQAGLNFFKQS-NGFTFG---SFAPA-GLASVTGGGTSSMSVSANIPIASAFNLVVG 226 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 R F L LE R LA+PTL A+SGQSASF +GG+ + V S G S+ Sbjct: 227 SATRGLFAD-LSILEANNLARVLAQPTLVALSGQSASFLAGGE-IPVPVPQSLGTISIDW 284 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSG 365 YGV L TPTVLSP RI L++ E S+ I +N +P+ R+ADTTVEL G Sbjct: 285 KPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDG 344 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + V+ GL+ + + +P L +PI+G F++ + + + E+ I TP LV P+A + Sbjct: 345 ESFVIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-K 403 Query: 426 DLSRP 430 + S P Sbjct: 404 NASLP 408 >gi|311107631|ref|YP_003980484.1| type II and III secretion system family protein 2 [Achromobacter xylosoxidans A8] gi|310762320|gb|ADP17769.1| bacterial type II and III secretion system family protein 2 [Achromobacter xylosoxidans A8] Length = 453 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 132/247 (53%), Gaps = 17/247 (6%) Query: 207 RDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 R ++K G + + G SG S + A GG S FS+ D +F L L+ Sbjct: 193 RSVMKAAGISFTASNGPWSGGSSTMPASLGGALAS---GFSL--FYDSNNFSARLRLLQT 247 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R LAEPTL A++GQSASF +GG+ L + G +VT +G+ L TPTVLS Sbjct: 248 NGMARVLAEPTLVALTGQSASFLAGGE-LPIPQAGGLGTVNVTFKPFGIGLTVTPTVLSR 306 Query: 326 GRIGLRIQTEVSE----PVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 RI L++ E SE I +N +P+ R R+ADTTVEL G + V++GL+ Sbjct: 307 DRISLKVAPEASELDYTNGIAINTSADTSTIIPALRTRRADTTVELGDGESFVISGLVSR 366 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + + +P+L +PI+G+ FR+ +++E+TE+ I TP LV+P+A R ++ P Sbjct: 367 QTKAMVNKVPMLGDLPIIGSFFRSVDYSQEDTELVIVVTPRLVRPIA-RGVALPLPGAKQ 425 Query: 437 EDDAKAF 443 E AF Sbjct: 426 EQTDTAF 432 >gi|283779187|ref|YP_003369942.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283437640|gb|ADB16082.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 940 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 120/429 (27%), Positives = 189/429 (44%), Gaps = 63/429 (14%) Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD-GKQMLNLDILIERDIAH 122 VD+ V D + DVV +PR + + GK+ G +V D Q L + +E D Sbjct: 487 VDIYRTAVVDESICDVVQFTPREVSIIGKSQGATHVTFWFDDPNSQPLTWLVKVEPDAEE 546 Query: 123 ----------LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS- 171 L+ + DS I + +V+ +++ G + DS+ A ++ +Q+ Sbjct: 547 VKKEEQTYKLLQDVINEMFPDSKIELVVVASKLIVRGQAK---DSEEAAQIISIIRAQTG 603 Query: 172 -----------------------GRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVR 206 + NSS + V+N+L + G QV LKV IAE+ Sbjct: 604 GQGQNGLGGGQNGLGEGAAADVLSDSATGNSSRSRLQVINMLRVPGVHQVALKVKIAELN 663 Query: 207 R--------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 R D+ I F S GSS +S GG+ + + +D + Sbjct: 664 RTAARGFGVDLKTDISFSESEKGSSLL-LESILNMAGGQAPA------LLTQIDGDEIQI 716 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVL 316 + L++ ++ LAEPTL +SG+ A+F +GG+ TV S G +VTT +G ++ Sbjct: 717 GIRYLQQHGVVKLLAEPTLVTLSGRPATFIAGGEFAVPTVVGSAGLNAVTTDFRAFGAII 776 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 F PTV+ RI L + E S+ +N G P RVR A TTVE+ G T+ +AGLL+D Sbjct: 777 SFMPTVVDKDRIRLEVAPEFSQINQDLNVGGTPGLRVRAATTTVEMREGQTLAIAGLLED 836 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 ++ G +P L +F R ETE+ I +P LV P+ ++ P + V Sbjct: 837 NMNGTTIG-----DLPFLAKIFGRRGMQRNETELLILVSPELVHPMEPEEVP-PLPGFDV 890 Query: 437 EDDAKAFFF 445 + FF Sbjct: 891 TEPTNGQFF 899 >gi|283781350|ref|YP_003372105.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283439803|gb|ADB18245.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 940 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 125/454 (27%), Positives = 198/454 (43%), Gaps = 79/454 (17%) Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD-GKQMLNLDILIERDIAH 122 VD+ V D + DVV +PR + + GK+ G +V D Q L + +E D Sbjct: 487 VDIYRTAVVDESICDVVQFTPREVSIIGKSQGATHVTFWFDDPNSQPLTWLVKVEPDAEE 546 Query: 123 ----------LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS- 171 L+ + DS I + +V+ +++ G + DS+ A ++ +Q+ Sbjct: 547 VKKEEQTYKLLQDVINEMFPDSKIELVVVASKLIVRGQAK---DSEEAAQIISIIRAQTG 603 Query: 172 -----------------------GRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVR 206 + NSS + V+N+L + G QV LKV IAE+ Sbjct: 604 GQGQNGLGGGQNGLGEGAAADVLSDSATGNSSRSRLQVINMLRVPGVHQVALKVKIAELN 663 Query: 207 R--------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 R D+ I F S GSS +S GG+ + + +D + Sbjct: 664 RTAARGFGVDLKTDISFSESEKGSSLL-LESILNMAGGQAPA------LLTQIDGDEIQI 716 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVL 316 + L++ ++ LAEPTL +SG+ A+F +GG+ TV S G +VTT +G ++ Sbjct: 717 GIRYLQQHGVVKLLAEPTLVTLSGRPATFIAGGEFAVPTVVGSAGLNAVTTDFRAFGAII 776 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 F PTV+ RI L + E S+ +N G P RVR A TTVE+ G T+ +AGLL+D Sbjct: 777 SFMPTVVDKDRIRLEVAPEFSQINQDLNVGGTPGLRVRAATTTVEMREGQTLAIAGLLED 836 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR--------DLS 428 ++ G +P L +F R ETE+ I +P LV P+ D++ Sbjct: 837 NMNGTTIG-----DLPFLAKIFGRRGMQRNETELLILVSPELVHPMEPEEVPPLPGFDVT 891 Query: 429 RPDD-----HYSVE----DDAKAFFFNRVNKIYG 453 P + H +E D ++ + R+ K YG Sbjct: 892 EPTNGQFFLHGDLEGNPTQDYRSTVWPRLRKRYG 925 >gi|170701752|ref|ZP_02892688.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] gi|170133335|gb|EDT01727.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] Length = 444 Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 121/423 (28%), Positives = 195/423 (46%), Gaps = 73/423 (17%) Query: 34 AAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV----HSPRTMY 88 AA N S D+ +G ++I+ G +Q + V DP DV+V H+ ++ Sbjct: 23 AAGTNASIDLAVGSQRQIAAGRT----------LQRIAVGDPAVVDVLVMKGSHA-GSVL 71 Query: 89 LFGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 L K G NV+L G D + N++++ A L+ T +V+ V Sbjct: 72 LVAKAPGSTNVLLWERGRDEPTVWNVNVVDAAAQAALDGT--------GPKVKAYGGAAV 123 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L G ++ +RAV + + + G V++ + V + V + E Sbjct: 124 LSGSSASLDAHERAVAVGKRMGGKDG----------TVIDASTVGNRSVVQVDVRVVEFS 173 Query: 207 RDILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV- 247 R +LK+ G S+TG G + +FAA GG ++ + V Sbjct: 174 RSVLKEAGLNFFKQSNGFAFGAFSPGGLQSVTG---GATSAFAAT-GGIPIASAFNLVVN 229 Query: 248 ---KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 +G+ S LE R LA+PTL A+SGQSASF +GG+ + V + G+ Sbjct: 230 SAGRGIFGNISI------LEANNLARVLAQPTLVALSGQSASFLAGGE-IPVPVPQALGS 282 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360 T++ YGV L TPTVLS RI L++ E S+ + +N+ +P+ R+ADTTV Sbjct: 283 TAIDWKQYGVGLTLTPTVLSQRRIALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTV 342 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL G + V+ GL+ + +P+L +PI+GA F++ + + + E+ I TP LV Sbjct: 343 ELGDGESFVIGGLIDRETMSNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVA 402 Query: 421 PVA 423 P+A Sbjct: 403 PIA 405 >gi|170696786|ref|ZP_02887895.1| type II and III secretion system protein [Burkholderia graminis C4D1M] gi|170138302|gb|EDT06521.1| type II and III secretion system protein [Burkholderia graminis C4D1M] Length = 479 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 116/412 (28%), Positives = 185/412 (44%), Gaps = 75/412 (18%) Query: 66 VQDVLVSDPTKADV-VVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 ++ V + DP+ ADV ++ +T + L GK+ G NV+L L+ + + A Sbjct: 50 LRRVAIGDPSVADVLIIKGDKTGGVLLIGKSPGTTNVMLWEQGKDAPLSYVVNVSSPAA- 108 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ------------ 170 + + V+++ DT ++ G T++ RA +E Q Sbjct: 109 -----KSLLGPGTPSVKVLGDTALITGAAPTMEAHHRAAAAAEIEAHQRAALGGAGGIGT 163 Query: 171 ---------SGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--- 216 G N ANS+S ++ + IA V + V + E R +LKQ+G Sbjct: 164 ADGAKSGANGGPNGSANSASNNAQIYDTSTIATRSVVQVDVRVVEFSRTVLKQVGLNILK 223 Query: 217 ------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHA 262 ++T ++ GP+ SF+ SV + F+ F + H Sbjct: 224 QNNGFTFGSFAPSALTSATYGPTPSFS--------------SVAPISSAFNLVFNSATHG 269 Query: 263 L-------ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 L E R LAEPTL A+SGQSASF +GG+ + + G TS+ YGV Sbjct: 270 LFADLSLMESNNLARILAEPTLVALSGQSASFLAGGE-IPVPIPQGLGTTSIEYKPYGVG 328 Query: 316 LHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 L TPTVLSP RI L++ E S+ + ++ +P+ R+ DTTVEL G + V+ Sbjct: 329 LTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAITTRRTDTTVELGDGESFVIG 388 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 GL+ + +PLL +P++GA F+ + + + E+ I TP LV P+A Sbjct: 389 GLIDRETISNVAKVPLLGDLPVIGAFFKQLNYQQNDKELVIIVTPHLVSPLA 440 >gi|323525746|ref|YP_004227899.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] gi|323382748|gb|ADX54839.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] Length = 474 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 114/403 (28%), Positives = 176/403 (43%), Gaps = 59/403 (14%) Query: 69 VLVSDPTKADV-VVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 V + DP+ ADV V+ RT + L GK+ G NV+L L+ + + A Sbjct: 44 VAIGDPSVADVLVIRGDRTGGVLLIGKSPGSTNVMLWEQGKDAPLSYVVNVSSPAA---- 99 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR------------ 173 + + V+++ DT ++ G T++ QRAV + Q Sbjct: 100 --KSLLGPDTPSVKVLGDTALISGSAPTMEAHQRAVAAAGIEAHQRATLGSAAKGGTGGK 157 Query: 174 ---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-- 216 S ++ + +A V + V + E R +LKQ+G Sbjct: 158 AGVASALAGADAANGGASGGESGTQIYDSSTVATRSVVQVDVRVVEFSRTVLKQVGLNIL 217 Query: 217 ---HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHAL-------E 264 + T S PS +A +G SV + F+ F + H L E Sbjct: 218 KQNNGFTFGSFAPSALSSATYGATPTFN----SVAPISSAFNLVFNSATHGLFADLSLME 273 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 R LAEPTL A+SGQSASF +GG+ + + G TS+ YGV L TPTVLS Sbjct: 274 SNNLARILAEPTLVALSGQSASFLAGGE-IPVPIPQGLGTTSIEYKPYGVGLTLTPTVLS 332 Query: 325 PGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 P RI L++ E S+ + ++ +P+ R+ DTTVEL G + V+ GL+ + Sbjct: 333 PQRIALKVAPEASQLDFANAVTISGVSVPAITTRRTDTTVELGDGESFVIGGLIDRETIS 392 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +PLL +P++GA F+ + + + E+ I TP LV P+A Sbjct: 393 NVAKVPLLGDLPVIGAFFKQLNYQQNDKELVIIVTPHLVSPLA 435 >gi|115351456|ref|YP_773295.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] gi|115281444|gb|ABI86961.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] Length = 444 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 120/423 (28%), Positives = 195/423 (46%), Gaps = 73/423 (17%) Query: 34 AAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV----HSPRTMY 88 AA N S D+ +G ++++ G +Q + V DP DV+V H+ ++ Sbjct: 23 AAGTNASIDLAVGSQRQVAAGRT----------LQRIAVGDPAVVDVLVMKGSHA-GSVL 71 Query: 89 LFGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 L K G NV+L G D + N++++ A L+ S +V+ V Sbjct: 72 LVAKAPGSTNVLLWERGRDEPTVWNVNVVDAAAQAALD--------GSAPKVKGYGGAAV 123 Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L G ++ +RAV + + + G V++ + V + V + E Sbjct: 124 LSGSSASLDAHERAVAVGKRMGGKDG----------TVIDASTVGNRSVVQVDVRVVEFS 173 Query: 207 RDILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV- 247 R +LK+ G S+TG G + +FAA GG ++ + V Sbjct: 174 RSVLKEAGLNFFKQSNGFAFGAFSPGGLQSVTG---GATSAFAAT-GGIPIASAFNLVVN 229 Query: 248 ---KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 +G+ S LE R LA+PTL A+SGQSASF +GG+ + V + G+ Sbjct: 230 SAGRGIFGNISI------LEANNLARVLAQPTLVALSGQSASFLAGGE-IPVPVPQALGS 282 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360 T++ YGV L TPTVLS RI L++ E S+ + +N+ +P+ R+ADTTV Sbjct: 283 TAIDWKQYGVGLTLTPTVLSQHRIALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTV 342 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL G + V+ GL+ + +P+L +PI+GA F++ + + + E+ I TP LV Sbjct: 343 ELGDGESFVIGGLIDRETMSNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVA 402 Query: 421 PVA 423 P+A Sbjct: 403 PIA 405 >gi|293606490|ref|ZP_06688848.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553] gi|292815113|gb|EFF74236.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553] Length = 458 Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 132/241 (54%), Gaps = 23/241 (9%) Query: 207 RDILKQIGFQHSIT-----GSSSGPSKSFAADFG---GKFVSEGGDFSVKGVLDRFSFET 258 R ++KQ G + + G+S+ A G G ++ G FS+ D +F Sbjct: 190 RSVMKQAGINFAASNGPWAGTSATAPSGLGAPLGFTPGGIIASG--FSL--FYDSNNFSA 245 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 L L+ R LAEPTL A++GQSASF +GG+ L + G T+VT +G+ L Sbjct: 246 RLRLLQSNGMARVLAEPTLVALTGQSASFLAGGE-LPIPEAGGLGTTTVTFKPFGIGLTV 304 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGD-----MPSYRVRKADTTVELPSGGTIV 369 TPTVLS RI L++ E SE I +N +P+ R R+ADTTVEL G + V Sbjct: 305 TPTVLSRDRISLKVAPEASELDYSNGIAINTSADTSTIIPALRTRRADTTVELGDGESFV 364 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++GL+ + + +P+L +PI+GA FR+ +++E+TE+ I TP LV+P+A R ++ Sbjct: 365 ISGLVSRQTKAMVNKVPMLGDLPIIGAFFRSVDYSQEDTELVIVVTPRLVRPIA-RGVTL 423 Query: 430 P 430 P Sbjct: 424 P 424 >gi|322419944|ref|YP_004199167.1| type II and III secretion system protein [Geobacter sp. M18] gi|320126331|gb|ADW13891.1| type II and III secretion system protein [Geobacter sp. M18] Length = 493 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 115/371 (30%), Positives = 166/371 (44%), Gaps = 49/371 (13%) Query: 81 VHSPRTMYLFGKNVGQANVILI----GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 + S + L G +G ++I+ G + D+ + D +E L+ I Sbjct: 116 ILSEYVLKLDGTAIGSTSMIIWTKGEGDERPAPTFFDLKVTGDREAIENQLKEMAPKETI 175 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 V+ SDTVVL G V Q +A E+++ F + KV+N + + QV Sbjct: 176 VVQYASDTVVLSGNVANDQTKTKAFEIAKAF-------------APKVINNMTVNVPQQV 222 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------GDFSVKG 249 L+V +A+V + LK++G I GS++ + A G G GDF Sbjct: 223 LLQVKVAQVDKSSLKKLGISFLIKGSTAEGFSNLVAGPDGAVTGIGTGAATGIGDFPS-- 280 Query: 250 VLDRFS---------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 LD F VL AL + LAEP L S Q F +G + + S Sbjct: 281 -LDSFQAGVSYFPAGIGAVLSALSSKGLAKVLAEPNLLVRSSQEGYFLAGSKIPIAILES 339 Query: 301 STG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ-TEVSE-----PVIGVNAGDMPSYR 352 + G TS+ G+ L F P VL G I L+I EVS PV G P Sbjct: 340 TGGQATTSIRYEPVGIKLKFKPEVLENGMISLKINPAEVSSIQGFLPVNG-----YPIID 394 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +T+VEL G +++LAGLL++D + IPLL IPILGALFR+S + +E E+ Sbjct: 395 TRTVETSVELKDGESLILAGLLQEDEIKNMSKIPLLGDIPILGALFRSSSSDIKEKELVF 454 Query: 413 AATPFLVKPVA 423 TP +V+P A Sbjct: 455 FITPKIVQPTA 465 >gi|317403496|gb|EFV84000.1| hypothetical protein HMPREF0005_03138 [Achromobacter xylosoxidans C54] Length = 458 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/255 (36%), Positives = 132/255 (51%), Gaps = 25/255 (9%) Query: 207 RDILKQIGFQHSITGSSSGPSKS--------FAADFG-GKFVSEGGDFSVKGVLDRFSFE 257 R ++KQ G + SGP S F A G K + FS+ D F Sbjct: 190 RSVMKQAGISFA---GRSGPWGSTNSITPDGFPAPLGFNKGAALASGFSL--FYDSNDFS 244 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 L L+ R LAEPTL A++GQSASF +GG+ L + G T+VT +G+ L Sbjct: 245 ARLRLLQNNGMARVLAEPTLVALTGQSASFLAGGE-LPIPEAGGLGTTTVTFKPFGIGLT 303 Query: 318 FTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD-----MPSYRVRKADTTVELPSGGTI 368 TPTVLS RI L++ E SE I V+ G +P+ R R+ADTTVEL G + Sbjct: 304 VTPTVLSRERIALKVAPEASELDYSNAIAVSNGTNSTTLIPALRTRRADTTVELGDGESF 363 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 V++GL+ + L +P+L +PI+G+ FR+ + +E+TE+ I TP LV+P+A R ++ Sbjct: 364 VVSGLVSRQTRALVNKVPMLGDLPIIGSFFRSVDYTQEDTELVIVVTPRLVRPIA-RGVT 422 Query: 429 RPDDHYSVEDDAKAF 443 P E AF Sbjct: 423 LPLPGAKQEAADTAF 437 >gi|190574779|ref|YP_001972624.1| putative exported fimbriae assembly protein [Stenotrophomonas maltophilia K279a] gi|190012701|emb|CAQ46329.1| putative exported fimbriae assembly protein [Stenotrophomonas maltophilia K279a] Length = 451 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 129/435 (29%), Positives = 204/435 (46%), Gaps = 66/435 (15%) Query: 62 VPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P D++ V ++DP AD+V + R L GK G ++L + L + ++ + Sbjct: 46 LPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHRKQAEPQRLQVRVQSAV 105 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS-ETFLSQSGRNQYANS 179 + AD+ +G+V T QD+Q ++ S ++ LS + A Sbjct: 106 --------QGAADAGS-----------NGLVFTQQDNQGLLQGSTDSVLSHMQEQKTAAM 146 Query: 180 SSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADF 234 + K + + ++ V ++V + E + LKQIG FQ+ + SFA F Sbjct: 147 ALGKDGLLADASTVSSGGVVQVEVKVVEFNKTALKQIGISFQNR--------NGSFAYGF 198 Query: 235 ---GGKF---------VSEG--GDFSVKGVLDRF-----SFETVLHA----LERATAIRT 271 GG+ + EG G+ + + F S + + +A L+ R Sbjct: 199 ARPGGQLPGNTGILPGMKEGNSGNEAESPISSAFRLVFGSTKGLWNADVDLLQSNGMARV 258 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEPTL A+SGQSASF +GG+ L G T++T +G+ L TPTVL+P RI L+ Sbjct: 259 LAEPTLVALSGQSASFLAGGE-LPILEPQGLGTTTITYKPFGIGLTVTPTVLAPNRIALK 317 Query: 332 IQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + E S+ I +N +PS R+ADTTVEL G + V+ GL+ ++ IPL Sbjct: 318 VAPEASDLDYSNAIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSNVGKIPL 377 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L +PI+G+ FRN + R++ E+ I TP LV+P+A R+ P E +AK Sbjct: 378 LGDLPIIGSFFRNFDYKRQDKELVIIVTPRLVQPLA-RNTELP---LPGEREAKPHMPEW 433 Query: 448 VNKIYGPKEASEVEG 462 + GP V G Sbjct: 434 GAWLLGPISQDPVPG 448 >gi|194366097|ref|YP_002028707.1| type II and III secretion system protein [Stenotrophomonas maltophilia R551-3] gi|194348901|gb|ACF52024.1| type II and III secretion system protein [Stenotrophomonas maltophilia R551-3] Length = 452 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 128/428 (29%), Positives = 198/428 (46%), Gaps = 52/428 (12%) Query: 62 VPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P D++ V ++DP AD+V + R L GK G ++L + + + ++ Sbjct: 47 LPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHRKQAEPQRMQVRVQS-- 104 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS-ETFLSQSGRNQYANS 179 V+ +DT G+V T QD+Q ++ S ++ LS + A Sbjct: 105 ----------------AVQGAADTGS-GGLVFTQQDNQGLLQGSTDSVLSHMQEQRTAAM 147 Query: 180 SSKKVMNLLN---IAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSG---PSKSFA 231 + K L + I+ V ++V + E + LKQIG FQ+ + G P Sbjct: 148 ALGKDGTLADTSTISSGGVVQVEVKVVEFNKTALKQIGISFQNRNGNFAYGFARPGGQLP 207 Query: 232 ADFG---GKFVSEGGDFSVKGVLDRF-----SFETVLHA----LERATAIRTLAEPTLTA 279 + G G G+ + + F S + + +A L+ R LAEPTL A Sbjct: 208 GNTGILPGMKEGNSGNEAESPISSAFRLVFGSTKGLWNADVDLLQSNGMARVLAEPTLVA 267 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 +SGQSASF +GG+ L G T++T +G+ L TPTVL+P RI L++ E S+ Sbjct: 268 LSGQSASFLAGGE-LPILEPQGLGTTTITYKPFGIGLTVTPTVLAPNRIALKVAPEASDL 326 Query: 339 ---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 I +N +PS R+ADTTVEL G + V+ GL+ ++ IPLL +PI+G Sbjct: 327 DYSNAIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSSVGKIPLLGDLPIIG 386 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 + FRN + R++ E+ I TP LVKP+A +L P D +AK + GP Sbjct: 387 SFFRNFDYKRQDKELVIIVTPRLVKPLARNTELPLPGDR-----EAKPHMPEWGAWLLGP 441 Query: 455 KEASEVEG 462 V G Sbjct: 442 ISQDPVPG 449 >gi|307944371|ref|ZP_07659712.1| putative type III secretion component [Roseibium sp. TrichSKD4] gi|307772717|gb|EFO31937.1| putative type III secretion component [Roseibium sp. TrichSKD4] Length = 411 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 105/385 (27%), Positives = 179/385 (46%), Gaps = 24/385 (6%) Query: 58 IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 I+L+ V V + A+V + + +Y+ G G N++++ +D + + I++ Sbjct: 31 ILLRFNEPVASVFIGSNEIAEVQAVNEKAIYVSGLTAGTTNLLVMNYDNDIIRSHAIVVH 90 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 L I + ++ V+ +T ++ G V I D+ E+ +T L + GR Sbjct: 91 PVNNETSYLLENLIPNGDVTVQSSGNTSIIRGNVDNIDDADDIREV-KTRLEEQGR---- 145 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------SSSGPSKS 229 KV++ + QV+LKV I E+ R L ++GF S + SG ++ Sbjct: 146 -----KVIDKTTTSTPVQVSLKVRIVELYRADLIKLGFDVSSVSSGSVFKVVTGSGIAQD 200 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 F + G V + G + F+ +L LE+ I+ LAEP LT ++G+ A+F S Sbjct: 201 FMSTLIGS-VEGQTRVGISGANNSFNVNAMLDLLEKRGYIQILAEPRLTTVTGEKATFRS 259 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD 347 GG+ +V+ G + + G+ + F P +L +I + I +E+ +P VN+ Sbjct: 260 GGEFAV-SVNQGNGVFTAEYKETGISIDFIPEILPGDKISIDISSEIKFVDPQSVVNSA- 317 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ VR T ++ SG T LAGL + K G P LSKIP+ G L + +REE Sbjct: 318 -PALLVRSVQTNAQVASGQTFALAGLYQLTQSSSKSGPPYLSKIPVFGNLLSKTNESREE 376 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDD 432 E+ TP+LV + +P D Sbjct: 377 RELIFFITPYLVHSSVPIEKKQPTD 401 >gi|167911136|ref|ZP_02498227.1| type II/III secretion system protein [Burkholderia pseudomallei 112] Length = 432 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 119/390 (30%), Positives = 182/390 (46%), Gaps = 50/390 (12%) Query: 66 VQDVLVSDPTKADV-VVHSPRT-MYLFGKNVGQANVILI--GHDGKQMLNLDILIERDIA 121 VQ V ++DP ADV V+ R + L K G ++++ G D ++++ Sbjct: 35 VQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLMVWERGRDEPAAYTVNVV------ 88 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 R + + V+ + T V+ G T+ RA+ + + + G Sbjct: 89 --SGAARALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDG--------- 137 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFV 239 V+++ + G++ V + V + E R +LKQ G F G + G SFA G V Sbjct: 138 -GVLDVSTVGGKNVVQVDVRVVEFSRSVLKQAGLNFFKQNNGFTFG---SFAPA-GLASV 192 Query: 240 SEGGDFS---------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + GG S V G R F L LE R LA+PTL A+SGQS Sbjct: 193 TGGGTSSMSVSANIPIASAFNLVVGSATRGLFAD-LSILEANNLARVLAQPTLVALSGQS 251 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340 ASF +GG+ + V S G S+ YGV L TPTVLSP RI L++ E S+ Sbjct: 252 ASFLAGGE-IPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHS 310 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 I +N +P+ R+ADTTVEL G + V+ GL+ + + +P L +PI+G F++ Sbjct: 311 ITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRETTSNVDKVPFLGDLPIIGTFFKH 370 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRP 430 + + + E+ I TP LV P+A ++ S P Sbjct: 371 LSYQQNDKELVIIVTPHLVAPIA-KNASLP 399 >gi|297568753|ref|YP_003690097.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] gi|296924668|gb|ADH85478.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] Length = 406 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 132/261 (50%), Gaps = 23/261 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQ-----HSITGSSSGPS-----------KSFAADFGGKF 238 QV + + EV R L+Q G SIT +++ P A+D G F Sbjct: 117 QVRADIRVVEVSRRALRQSGVNLLKDSDSITVATTAPGVLTGIDNQAAGLPLASDSG--F 174 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 V F++ + ++ LE TLAEP+LT +SG++ASF +GG+ Sbjct: 175 VPLAQAFNLVAGDAKQRLLGIISLLESNGFAYTLAEPSLTVMSGKTASFLAGGEVPIPVS 234 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVR 354 ++G+ S+ D+GV L TPTVL P RI + + EVSE + +P +RVR Sbjct: 235 HGTSGSVSIEYRDFGVRLQLTPTVLDPRRITIEVSPEVSELDFSAAVSTAGVTVPGFRVR 294 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +TTV+L G + V++GL+ ++ E +P L +PILGA F+++R + E+ + Sbjct: 295 RTETTVQLADGESFVISGLISNENASTVEKVPFLGSLPILGAFFKSTRLQSNDKELIMVV 354 Query: 415 TPFLVKPVAM-RDLSRPDDHY 434 TP LV+P+ + P +HY Sbjct: 355 TPHLVRPLERGAQVPLPGEHY 375 >gi|149173675|ref|ZP_01852304.1| probable type II secretion system protein [Planctomyces maris DSM 8797] gi|148847205|gb|EDL61539.1| probable type II secretion system protein [Planctomyces maris DSM 8797] Length = 744 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/257 (35%), Positives = 139/257 (54%), Gaps = 20/257 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 G N YA+S ++N+L I GE QV + VTIA++ R +++Q+G S+ Sbjct: 311 GNNGYASSF---IVNMLEIPGEFQVMIHVTIAQMNRTMMRQLGVDLSVL----------- 356 Query: 232 ADFGGKFV--SEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 D G +F+ S GG ++ G+ + +++AL + + +A PTLT +SG SASF Sbjct: 357 FDGGRQFLGSSMGGVPSTLTGIFEAGEVNVLINALAQNGTTKIMARPTLTVLSGHSASFL 416 Query: 289 SGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 +GG+ T+ GA TS T +G + TP V+ I +RI E S+ G + Sbjct: 417 AGGEFAVPTIVGVGGAQGTSTTFRGFGTSIVVTPIVIDKDLIRMRIVPEYSQINDGNSVQ 476 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNR 405 +P R+A TTVEL G TIVLAGL D IP L +IP++G+ LF + + ++ Sbjct: 477 GIPGLNSRRAQTTVELREGQTIVLAGLFGHDSSTGVTRIPWLGEIPLVGSYLFSSKQSSQ 536 Query: 406 EETEIFIAATPFLVKPV 422 E+E+ I TP LV+P+ Sbjct: 537 GESELLITVTPQLVRPM 553 >gi|332284569|ref|YP_004416480.1| putative outer membrane protein [Pusillimonas sp. T7-7] gi|330428522|gb|AEC19856.1| putative outer membrane protein [Pusillimonas sp. T7-7] Length = 474 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 109/384 (28%), Positives = 183/384 (47%), Gaps = 32/384 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ + +V +L +P DV V V D + V + + +F ++ G + + DG++ Sbjct: 28 LNLQVGEVKVLGIP-DVARVAVGDGHIINAVATDEKEVIVFARHEGSTALQIWSADGQRW 86 Query: 110 LNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + + ++ LR + + ++ V D +V+ G + D +R EL++ + Sbjct: 87 QYQIEVAPEGLRQIQQELRSVLERIPHAQLSAVGDKLVIEGDDLSDGDRERIAELAKHY- 145 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 ++++ G D+ V L V + EV R L+++G + + T + G S Sbjct: 146 -------------PQLLDFTGQVGWDRMVLLDVQVVEVPRIQLQELGLRWN-TATDGGLS 191 Query: 228 KSFAADFGGKFVSEGGDFSVKGV-------LDRFSFETVLHA-----LERATAIRTLAEP 275 A D G K + + SV + F +L A ++ TA+ LA+P Sbjct: 192 AGLAWDGGSKRLDDRPSESVMPIGFPATMAAGYFGVNALLSARINAMAQKGTAV-VLAQP 250 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L A SG +A F +GG+ Y TV ++ G T+ YGV L TP + G + RI+ E Sbjct: 251 QLLARSGSTAEFLAGGEVPYSTVDAN-GNTNTAFKPYGVSLRITPQIERNGAVRSRIEVE 309 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 VS ++ + PS + R+A T + SG T+VLAG L + + +P L IPILG Sbjct: 310 VSSVDNALSVPNGPSLKTRRAATEFNVRSGQTLVLAGFLSREATHNVDKVPGLGDIPILG 369 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF++SRF R ETE+ I TP LV Sbjct: 370 ELFKSSRFQRHETELAIFVTPVLV 393 >gi|116620532|ref|YP_822688.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223694|gb|ABJ82403.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 529 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 104/401 (25%), Positives = 185/401 (46%), Gaps = 35/401 (8%) Query: 41 DVEIGKGK-KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 DV+ G K+ + + K +I+ P+++Q + V++ + V +P+ + + GK G+ + Sbjct: 53 DVQPAPGPGKLMVTVGKSLIIDSPMNIQRISVANGELIEAVAVNPKEVLINGKAAGETTL 112 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMT---LRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 I+ G ++L D+ + L++ L R D I V ++ + G V+ + Sbjct: 113 IIWQQGGNRLL-YDLTVRISPVRLDVVRQQLARDFPDDEINVTYDNEVAFVRGRVKDLSA 171 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTIAEVRRDILKQI 213 + R + ++ +S K +NLL + E Q+ L V A V R + Sbjct: 172 ADRVMAIA--------------ASLGKTVNLLRVDVPPVETQILLHVRFANVDRGASTDL 217 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE------TVLHALERAT 267 G + TG+ + + + V G S+ L+ F + ALE Sbjct: 218 GVSLA-TGAFNQSTAITTGQYPPPTVGTDGRVSISDALNILLFRKDINLGATIKALESKR 276 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSP 325 + TLAEP + AI+G+ A+F +GG+ V GA S+T ++G+ ++F P + Sbjct: 277 MLETLAEPNVMAINGKPAAFIAGGEFPVPMVQGGGLAGAVSITFREFGIRINFLPKITPR 336 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 G I L + EVS + +P+ R+ T VEL +G + V+AGLL + + Sbjct: 337 GTIQLAVAPEVSSLDYSNAVTFQGYTIPALATRRIQTEVELETGQSFVIAGLLDNRTTET 396 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 IP LS IP+LG LF++ + TE+ + TP +V+P+ Sbjct: 397 LNKIPGLSNIPLLGKLFQSRAVAKNNTELMVIVTPEIVRPI 437 >gi|53719509|ref|YP_108495.1| putative exported fimbriae assembly protein [Burkholderia pseudomallei K96243] gi|76808601|ref|YP_333341.1| type II/III secretion system protein [Burkholderia pseudomallei 1710b] gi|121598954|ref|YP_993098.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|124383520|ref|YP_001026125.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] gi|126440403|ref|YP_001058807.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|134282202|ref|ZP_01768907.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|167002482|ref|ZP_02268272.1| type II/III secretion system protein [Burkholderia mallei PRL-20] gi|167719788|ref|ZP_02403024.1| type II/III secretion system protein [Burkholderia pseudomallei DM98] gi|167738786|ref|ZP_02411560.1| type II/III secretion system protein [Burkholderia pseudomallei 14] gi|167816009|ref|ZP_02447689.1| type II/III secretion system protein [Burkholderia pseudomallei 91] gi|167845916|ref|ZP_02471424.1| type II/III secretion system protein [Burkholderia pseudomallei B7210] gi|167894492|ref|ZP_02481894.1| type II/III secretion system protein [Burkholderia pseudomallei 7894] gi|167902899|ref|ZP_02490104.1| type II/III secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|237812067|ref|YP_002896518.1| bacterial type II/III secretion system protein [Burkholderia pseudomallei MSHR346] gi|238562618|ref|ZP_00440075.2| bacterial type II/III secretion system protein [Burkholderia mallei GB8 horse 4] gi|242315526|ref|ZP_04814542.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|254177827|ref|ZP_04884482.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|254179957|ref|ZP_04886556.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|254188633|ref|ZP_04895144.1| type II/III secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254198005|ref|ZP_04904427.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|254260610|ref|ZP_04951664.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] gi|254358355|ref|ZP_04974628.1| type II/III secretion system protein [Burkholderia mallei 2002721280] gi|52209923|emb|CAH35895.1| putative exported fimbriae assembly protein [Burkholderia pseudomallei K96243] gi|76578054|gb|ABA47529.1| type II/III secretion system protein [Burkholderia pseudomallei 1710b] gi|121227764|gb|ABM50282.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|124291540|gb|ABN00809.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] gi|126219896|gb|ABN83402.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|134246240|gb|EBA46329.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|148027482|gb|EDK85503.1| type II/III secretion system protein [Burkholderia mallei 2002721280] gi|157936312|gb|EDO91982.1| type II/III secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|160698866|gb|EDP88836.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|169654746|gb|EDS87439.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|184210497|gb|EDU07540.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|237503987|gb|ACQ96305.1| bacterial type II/III secretion system protein [Burkholderia pseudomallei MSHR346] gi|238522203|gb|EEP85649.1| bacterial type II/III secretion system protein [Burkholderia mallei GB8 horse 4] gi|242138765|gb|EES25167.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|243061822|gb|EES44008.1| type II/III secretion system protein [Burkholderia mallei PRL-20] gi|254219299|gb|EET08683.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] Length = 441 Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 118/390 (30%), Positives = 181/390 (46%), Gaps = 50/390 (12%) Query: 66 VQDVLVSDPTKADV-VVHSPRT-MYLFGKNVGQANVILI--GHDGKQMLNLDILIERDIA 121 VQ V ++DP ADV V+ R + L K G ++++ G D ++++ Sbjct: 44 VQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLMVWERGRDEPAAYTVNVV------ 97 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 R + + V+ + T V+ G T+ RA+ + + + G Sbjct: 98 --SGAARALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDG--------- 146 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFV 239 V+++ + G++ V + V + E R +LKQ G F G + G SFA G V Sbjct: 147 -GVLDVSTVGGKNVVQVDVRVVEFSRSVLKQAGLNFFKQNNGFTFG---SFAPA-GLASV 201 Query: 240 SEGGDFS---------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + GG S V G R F L LE R LA+PTL A+SGQS Sbjct: 202 TGGGTSSMSVSANIPIASAFNLVVGSATRGLFAD-LSILEANNLARVLAQPTLVALSGQS 260 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340 ASF +GG+ + V S G S+ YGV L TPTVLSP RI L++ E S+ Sbjct: 261 ASFLAGGE-IPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHS 319 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 I +N +P+ R+ADTTVEL G + + GL+ + + +P L +PI+G F++ Sbjct: 320 ITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKH 379 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRP 430 + + + E+ I TP LV P+A ++ S P Sbjct: 380 LSYQQNDKELVIIVTPHLVAPIA-KNASLP 408 >gi|167919159|ref|ZP_02506250.1| type II/III secretion system protein [Burkholderia pseudomallei BCC215] Length = 432 Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 118/390 (30%), Positives = 181/390 (46%), Gaps = 50/390 (12%) Query: 66 VQDVLVSDPTKADV-VVHSPRT-MYLFGKNVGQANVILI--GHDGKQMLNLDILIERDIA 121 VQ V ++DP ADV V+ R + L K G ++++ G D ++++ Sbjct: 35 VQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLMVWERGRDEPAAYTVNVV------ 88 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 R + + V+ + T V+ G T+ RA+ + + + G Sbjct: 89 --SGAARALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDG--------- 137 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFV 239 V+++ + G++ V + V + E R +LKQ G F G + G SFA G V Sbjct: 138 -GVLDVSTVGGKNVVQVDVRVVEFSRSVLKQAGLNFFKQNNGFTFG---SFAPA-GLASV 192 Query: 240 SEGGDFS---------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + GG S V G R F L LE R LA+PTL A+SGQS Sbjct: 193 TGGGTSSMSVSANIPIASAFNLVVGSATRGLFAD-LSILEANNLARVLAQPTLVALSGQS 251 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340 ASF +GG+ + V S G S+ YGV L TPTVLSP RI L++ E S+ Sbjct: 252 ASFLAGGE-IPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHS 310 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 I +N +P+ R+ADTTVEL G + + GL+ + + +P L +PI+G F++ Sbjct: 311 ITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKH 370 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRP 430 + + + E+ I TP LV P+A ++ S P Sbjct: 371 LSYQQNDKELVIIVTPHLVAPIA-KNASLP 399 >gi|53723520|ref|YP_102954.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|126448299|ref|YP_001080603.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|126452556|ref|YP_001066058.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|167824385|ref|ZP_02455856.1| type II/III secretion system protein [Burkholderia pseudomallei 9] gi|217423417|ref|ZP_03454918.1| type II/III secretion system protein [Burkholderia pseudomallei 576] gi|226199666|ref|ZP_03795219.1| type II/III secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|254199896|ref|ZP_04906262.1| type II/III secretion system protein [Burkholderia mallei FMH] gi|254206228|ref|ZP_04912580.1| type II/III secretion system protein [Burkholderia mallei JHU] gi|254297793|ref|ZP_04965246.1| type II/III secretion system protein [Burkholderia pseudomallei 406e] gi|52426943|gb|AAU47536.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|126226198|gb|ABN89738.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|126241169|gb|ABO04262.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|147749492|gb|EDK56566.1| type II/III secretion system protein [Burkholderia mallei FMH] gi|147753671|gb|EDK60736.1| type II/III secretion system protein [Burkholderia mallei JHU] gi|157807445|gb|EDO84615.1| type II/III secretion system protein [Burkholderia pseudomallei 406e] gi|217393275|gb|EEC33296.1| type II/III secretion system protein [Burkholderia pseudomallei 576] gi|225928252|gb|EEH24286.1| type II/III secretion system protein [Burkholderia pseudomallei Pakistan 9] Length = 432 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 118/390 (30%), Positives = 181/390 (46%), Gaps = 50/390 (12%) Query: 66 VQDVLVSDPTKADV-VVHSPRT-MYLFGKNVGQANVILI--GHDGKQMLNLDILIERDIA 121 VQ V ++DP ADV V+ R + L K G ++++ G D ++++ Sbjct: 35 VQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLMVWERGRDEPAAYTVNVV------ 88 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 R + + V+ + T V+ G T+ RA+ + + + G Sbjct: 89 --SGAARALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDG--------- 137 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFV 239 V+++ + G++ V + V + E R +LKQ G F G + G SFA G V Sbjct: 138 -GVLDVSTVGGKNVVQVDVRVVEFSRSVLKQAGLNFFKQNNGFTFG---SFAPA-GLASV 192 Query: 240 SEGGDFS---------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + GG S V G R F L LE R LA+PTL A+SGQS Sbjct: 193 TGGGTSSMSVSANIPIASAFNLVVGSATRGLFAD-LSILEANNLARVLAQPTLVALSGQS 251 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340 ASF +GG+ + V S G S+ YGV L TPTVLSP RI L++ E S+ Sbjct: 252 ASFLAGGE-IPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHS 310 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 I +N +P+ R+ADTTVEL G + + GL+ + + +P L +PI+G F++ Sbjct: 311 ITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKH 370 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRP 430 + + + E+ I TP LV P+A ++ S P Sbjct: 371 LSYQQNDKELVIIVTPHLVAPIA-KNASLP 399 >gi|254523433|ref|ZP_05135488.1| type II and III secretion system protein:Transport-associated [Stenotrophomonas sp. SKA14] gi|219721024|gb|EED39549.1| type II and III secretion system protein:Transport-associated [Stenotrophomonas sp. SKA14] Length = 433 Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 46/388 (11%) Query: 62 VPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P D++ V ++DP AD+V + R L GK G ++L + + + ++ + Sbjct: 28 LPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHRKQAEPQRVQVRVQSAV 87 Query: 121 AHLEMT----LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 T L D ++ +D+V+ H +Q+ Q A ++ Q Sbjct: 88 QGAANTGTSGLLFTQQDQQGLLQGSTDSVLAH-----MQEQQTAA------MALGKEGQL 136 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSG---PSKSFA 231 A++S+ ++ V ++V + E + LKQIG FQ+ + G P Sbjct: 137 ADAST--------VSSGGVVQVEVKVVEFNKTALKQIGISFQNRNGSFAYGIARPGGQLP 188 Query: 232 ADFG---GKFVSEGGDFSVKGVLDRF-----SFETVLHA----LERATAIRTLAEPTLTA 279 + G G E G+ S + F S + + +A L+ R LAEPTL A Sbjct: 189 GNTGILPGMKEGESGNESTSPISSAFRLVFGSTKGLWNADVDLLQSNGMARVLAEPTLVA 248 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 +SGQSASF +GG+ L G T++T +G+ L TPTVL+P RI L++ E S+ Sbjct: 249 LSGQSASFLAGGE-LPILEPQGLGTTTITYKPFGIGLTVTPTVLAPNRIALKVAPEASDL 307 Query: 339 ---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 I +N +PS R+ADTTVEL G + V+ GL+ ++ IPLL +PI+G Sbjct: 308 DYSNSIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSSVNKIPLLGDLPIIG 367 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVA 423 + FRN + R++ E+ I TP LV+P+A Sbjct: 368 SFFRNFDYKRQDKELVIIVTPRLVQPLA 395 >gi|114321311|ref|YP_742994.1| type II and III secretion system protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227705|gb|ABI57504.1| type II and III secretion system protein [Alkalilimnicola ehrlichii MLHE-1] Length = 428 Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 88/254 (34%), Positives = 133/254 (52%), Gaps = 21/254 (8%) Query: 195 QVTLKVTIAEVRRDILKQIG-----------FQHSITGSSSG---PSKSFAADFGGKFVS 240 QV + + EV R L+++G F GS SG P A+ G Sbjct: 139 QVQADIRLVEVSRSKLREMGGSILGRRGSANFLFGGPGSVSGSVAPGGVGDANVGLPASD 198 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G + G RF ++++ALE TLAEP+L A+SGQSA+F +GG+ SS Sbjct: 199 SGFNIFYGGGGSRFL--SMINALEANDFAYTLAEPSLVALSGQSATFHAGGEFPVPVPSS 256 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356 + ++ ++GV + FTPTV+ R+ L++ EVSE I + +P RVR+ Sbjct: 257 GSDTINIRFKEFGVRVSFTPTVIDGDRLTLKVAPEVSELDDTSGIEIAGTRVPGLRVRRT 316 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DTTV L G + V++GL+ + + + P L IP+LGA FR+SR + E+ E+ + TP Sbjct: 317 DTTVTLGDGESFVISGLVSNHMASQVDKFPGLGNIPVLGAFFRSSRVSEEDRELLMIVTP 376 Query: 417 FLVKPVAMRDLSRP 430 LV+P+A RD +P Sbjct: 377 HLVQPLA-RDAEQP 389 >gi|299532819|ref|ZP_07046206.1| type II and III secretion system protein [Comamonas testosteroni S44] gi|298719043|gb|EFI60013.1| type II and III secretion system protein [Comamonas testosteroni S44] Length = 454 Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 106/182 (58%), Gaps = 6/182 (3%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 D+ + LE R LA PTL A+SGQSA+F SGG+ + V + TG ++ Sbjct: 240 FDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGE-VPVPVPAGTGMVAIQYK 298 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG+ L +PTVLS RI L++ E SE I +N+ +PS R+ADTTVEL G Sbjct: 299 PYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATVPSITTRRADTTVELGDGE 358 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + V+ GL+ + + +PLL IPILG LF+ F ++E+E+ I TP LVKP+A RD Sbjct: 359 SFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIVVTPRLVKPLA-RD 417 Query: 427 LS 428 ++ Sbjct: 418 VN 419 >gi|15602717|ref|NP_245789.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70] gi|12721161|gb|AAK02936.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70] Length = 470 Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 107/395 (27%), Positives = 186/395 (47%), Gaps = 38/395 (9%) Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDILIER--D 119 + + VS P+ AD + + ++ K G+A V G DGK + +N++ LI D Sbjct: 47 IDTIFVSSPSVADYEILDDNSFIIYAKEEGRAEVTAFGQDGKPLTTDFINVNPLISNIND 106 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA-----------VELSETFL 168 I+ ++ +SN+ V+ V V+ G RT ++S+ A +++ET Sbjct: 107 ISDTNRQIKARFPNSNLSVKKVGKAYVIEGKARTQEESEEAHRIVGEALGNSKKVTETSF 166 Query: 169 SQS-GRNQYANSSSK----KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGS 222 ++S G +Y K V+N ++A Q+ +K+++ EV + + + +G + G Sbjct: 167 NRSEGVKEYIPFLDKYQFDGVINNASVADSTQINVKLSVVEVNKKLTEALGINWGRVVGV 226 Query: 223 SSGPSKSFAADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 SGP + G F GG + + GV ++AL + LAEP+++ Sbjct: 227 HSGPLLGGSVSLSGGFSGSGGSTLNINATGV------SAFINALNNQDNGKILAEPSISL 280 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 +SG++A GG+ + G+ ++ ++GV L V RI L + VS Sbjct: 281 LSGETADILVGGELPFAQ-KDKEGSATIIYKEFGVKLIVGAKVQKNKRIRLALDQSVS-T 338 Query: 340 VIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G N G +P + R+A + E+ G + ++ GL + +PLL IPILG Sbjct: 339 IAGSYAYDNVGTVPYFNTRRAKSIFEVADGESFIIGGLFSSQDAEGINKVPLLGDIPILG 398 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 + FRN+R +RE+ E+ I AT +VKPV D+ P Sbjct: 399 SFFRNARTDREDKELVIVATVNVVKPVHESDIVYP 433 >gi|264680618|ref|YP_003280528.1| type II and III secretion system protein [Comamonas testosteroni CNB-2] gi|262211134|gb|ACY35232.1| type II and III secretion system protein [Comamonas testosteroni CNB-2] Length = 454 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 106/182 (58%), Gaps = 6/182 (3%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 D+ + LE R LA PTL A+SGQSA+F SGG+ + V + TG ++ Sbjct: 240 FDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGE-VPVPVPAGTGMVAIQYK 298 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG+ L +PTVLS RI L++ E SE I +N+ +PS R+ADTTVEL G Sbjct: 299 PYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATVPSITTRRADTTVELGDGE 358 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + V+ GL+ + + +PLL IPILG LF+ F ++E+E+ I TP LVKP+A RD Sbjct: 359 SFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIVVTPRLVKPLA-RD 417 Query: 427 LS 428 ++ Sbjct: 418 VN 419 >gi|294102189|ref|YP_003554047.1| type II and III secretion system protein [Aminobacterium colombiense DSM 12261] gi|293617169|gb|ADE57323.1| type II and III secretion system protein [Aminobacterium colombiense DSM 12261] Length = 384 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 114/434 (26%), Positives = 187/434 (43%), Gaps = 67/434 (15%) Query: 1 MRYLQRTFFTMMSIFLFS----SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56 M L+R + ++ + + P +A + ++AV+ +V K++S+G N Sbjct: 1 MACLKRKLWVFFAVVFLTVVVGALPVLAATYHLDVGDSAVLKYQNV-----KRMSVG-NP 54 Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 ++ +P+D VL++ GK G A +I+ G M IL+ Sbjct: 55 DVLDAIPLDNNQVLLT------------------GKVEGGAALIVWDAAGMHMEK--ILV 94 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 I L+ + NI V + VVL G V+T +D RAV ++ F Sbjct: 95 HPSIEAPSWELKELLQAENIDVTVRGGAVVLEGKVKTPRDRLRAVAIAGAF--------- 145 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--HSITGSSSG-----PSKS 229 +KV+NLL + Q+ L+ + EV++ +G + G+ G P Sbjct: 146 ----GEKVINLLEVDSAPQIKLRAVVMEVKKKDGDALGMKRLEGQEGTFWGIFDLTPDTG 201 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 D+ ++G +S K ++AL + L+ P LT +SG+ AS Sbjct: 202 HMLDY-----TKGAHYSAK-------INAWINALVENKEAKILSRPYLTTLSGEEASLNV 249 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNA 345 GG+ + V + YGV++ FTP + G I L + EVSE I Sbjct: 250 GGE-IPVPVGVDNNEIKIEWKPYGVIMKFTPELDGIGEIWLTFEAEVSEIDWENAIETQG 308 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ R RK V L ++V+ GLL + +L + IPLL IPI+G LF++ F Sbjct: 309 IKIPAIRTRKIANKVRLGHNESLVVGGLLDNKQSKLVKKIPLLGDIPIIGELFKSREFTN 368 Query: 406 EETEIFIAATPFLV 419 +ETE+ I TP +V Sbjct: 369 DETELVITVTPEVV 382 >gi|221070074|ref|ZP_03546179.1| type II and III secretion system protein [Comamonas testosteroni KF-1] gi|220715097|gb|EED70465.1| type II and III secretion system protein [Comamonas testosteroni KF-1] Length = 454 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 106/182 (58%), Gaps = 6/182 (3%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 D+ + LE R LA PTL A+SGQSA+F SGG+ + V + TG ++ Sbjct: 240 FDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGE-VPVPVPAGTGLVAIQYK 298 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG+ L +PTVLS RI L++ E SE I +N+ +PS R+ADTTVEL G Sbjct: 299 PYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATIPSITTRRADTTVELGDGE 358 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + V+ GL+ + + +PLL IPILG LF+ F ++E+E+ I TP LVKP+A RD Sbjct: 359 SFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIVVTPRLVKPLA-RD 417 Query: 427 LS 428 ++ Sbjct: 418 VN 419 >gi|319795779|ref|YP_004157419.1| type II and iii secretion system protein [Variovorax paradoxus EPS] gi|315598242|gb|ADU39308.1| type II and III secretion system protein [Variovorax paradoxus EPS] Length = 462 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/249 (35%), Positives = 128/249 (51%), Gaps = 20/249 (8%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + V ++V + E R +LKQ G S +S+G S + G K + D S+ G + Sbjct: 176 NTVQVEVKVVEFNRSVLKQAGLNIFSTRANSNGFSFGVFSPAGLKSSTFASDGSINGEYN 235 Query: 253 R---------FSFETV-----LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 F+F + LE R LAEPTL A+SGQSASF SGG+ L V Sbjct: 236 NPLAQAFSLLFNFGKAGIGLNVGFLEGNGMARVLAEPTLVAMSGQSASFLSGGE-LPVPV 294 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVR 354 G TS+ +G+ L TPTVLS RI L++ E S+ + +N +P+ R Sbjct: 295 PQGLGTTSIEYKPFGIGLTLTPTVLSNDRIVLKVAPEASDLDYTNSLSINGIAVPAISTR 354 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +ADTTVEL G + ++ GL+ + +PLL +PILG+ F+ +++ E E+ I Sbjct: 355 RADTTVELGDGESFIIGGLVSRTTTSNADKVPLLGDLPILGSFFKQNKYQMSEKELVILV 414 Query: 415 TPFLVKPVA 423 TP LVKP+A Sbjct: 415 TPHLVKPIA 423 >gi|198284413|ref|YP_002220734.1| type II and III secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666419|ref|YP_002427081.1| bacterial type II/III secretion system protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248934|gb|ACH84527.1| type II and III secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518632|gb|ACK79218.1| bacterial type II/III secretion system protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 478 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/268 (34%), Positives = 142/268 (52%), Gaps = 25/268 (9%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSS----GPSKSFAADFG 235 + KV++ I +D+V + V + E + LK +G S TG S GPS +A++ Sbjct: 169 TGKVIDQSVIPVDDEVQVGVKVVEFSKAQLKNVGINIFSSTGGFSLGTFGPSTLTSANYP 228 Query: 236 GKFVSEG-GDFSVKGV------------LDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S G G ++ GV + + L LE +R LAEPTL A++G Sbjct: 229 VSLASGGPGALAITGVAPFTQAFNLVGGVGNSGLSSYLSLLEGNNILRVLAEPTLVAMNG 288 Query: 283 QSASFTSGGQ-HLYKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 Q ASF +GG+ + SS G ++T YGV L TPT+LS RI L + VS Sbjct: 289 QQASFLAGGEIPIPVPQSSGVGTPTITIQYKKYGVQLDLTPTILSAHRIALHVAPSVSSL 348 Query: 339 ---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 I +N +P+ VR+ADTTV L +G ++V+ GL+ +QQ +P+L +PILG Sbjct: 349 DYTNAITLNGYSVPALLVRQADTTVTLGNGESLVIGGLVDRQMQQNISKVPILGDLPILG 408 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVA 423 A FR+ ++++++ E+ I TP LV+P+A Sbjct: 409 AFFRSIQYSKQDMELAIIVTPRLVRPIA 436 >gi|239817412|ref|YP_002946322.1| type II and III secretion system protein [Variovorax paradoxus S110] gi|239803989|gb|ACS21056.1| type II and III secretion system protein [Variovorax paradoxus S110] Length = 457 Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 97/313 (30%), Positives = 151/313 (48%), Gaps = 33/313 (10%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 A + +E+ + L G + ++ Q+A E + +G + A + V+N+ + Sbjct: 118 AATTYSIEVRRRSATLAGTMDSVAAHQQARETA-----MAGMPEKAELIDRSVVNVRS-- 170 Query: 192 GEDQVTLKVTIAEVRRDILKQIG------------FQHSITGSSSGPSKSFAADFGGKFV 239 + V ++V + E R +LKQ G F + G SS S +FA++ G Sbjct: 171 --NTVQVEVKVVEFNRSVLKQAGLNIFSTRANSNGFSFGVFGPSSLGSTTFASN--GSIS 226 Query: 240 SEGGDFSVKGVLDRFSFETV-----LHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 E + + F+F + LE R LAEPTL A+SGQSASF +GG+ L Sbjct: 227 GEYHNPLAQAFSLLFNFGKAGVGLNVGFLEGNGMARVLAEPTLVAMSGQSASFLAGGE-L 285 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPS 350 G TS+ +G+ L TPTVLS RI L++ E S+ + + +P+ Sbjct: 286 PVPAPQGLGTTSIEYKPFGIGLTLTPTVLSNDRIVLKVAPEASDLDYTNSLSIGGVAVPA 345 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+ADTTVEL G + ++ GL+ + +PLL +PILG FR +++ E E+ Sbjct: 346 ITTRRADTTVELGDGESFIIGGLVSRTTTSNVDKVPLLGDLPILGTFFRQNKYQMSEKEL 405 Query: 411 FIAATPFLVKPVA 423 I TP LVKP+A Sbjct: 406 VILVTPHLVKPIA 418 >gi|70734199|ref|YP_257839.1| type II/III secretion system protein [Pseudomonas fluorescens Pf-5] gi|68348498|gb|AAY96104.1| bacterial type II/III secretion system protein [Pseudomonas fluorescens Pf-5] Length = 417 Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 131/251 (52%), Gaps = 27/251 (10%) Query: 195 QVTLKVTIAEVRRDILKQ-----IGFQHS----------ITGSSSGPSKSFAADFGGKFV 239 QV + EV R LK+ G H+ +TG +SG S FGG+ Sbjct: 133 QVQTDIRFVEVSRTKLKEASVSIFGRGHNFLFGAPGTAPVTGGTSG---SVTPTFGGRRT 189 Query: 240 S---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + G F++ T+++ALE + TLA P+L A+SGQSASF +GG+ Sbjct: 190 NIPLDNGTFNIG--FGNGRVLTLINALEGSGFAYTLARPSLVALSGQSASFLAGGEIPIP 247 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352 S+ + + ++ ++G+ L TPT++ GRI L++ EVSE + + +P+ Sbjct: 248 VPSTGSNSVTIEYKEFGIRLTLTPTIVDRGRISLKVAPEVSELDYSNAVTIAGTQVPALT 307 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 VR+ DT++ L G + V++GL+ + P L IP+LGA FR++ NREE E+ + Sbjct: 308 VRRTDTSISLADGESFVISGLISTNNSSQVNKFPGLGDIPVLGAFFRDTTINREERELLM 367 Query: 413 AATPFLVKPVA 423 TP LV+P+A Sbjct: 368 VVTPHLVQPLA 378 >gi|296121060|ref|YP_003628838.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] gi|296013400|gb|ADG66639.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] Length = 622 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 106/403 (26%), Positives = 178/403 (44%), Gaps = 37/403 (9%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 K+ I ++Q P + V DP V + + + G G +++ +G Sbjct: 59 KLEIAERFARVVQFPRKILRVDGFDPAVLSVTALAHDQLRVQGITEGITTMVITDENGA- 117 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+++ D L+ L R ++++ V + D V+L G V Q V++++ + Sbjct: 118 ITTIDVMVAGDARLLQAVLSREYPNTSVTVTKLKDNVLLRGWVVEPQQITEIVDIAKLY- 176 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------S 222 Y N V+N + + G QV L+ + EV+R L+ +G + G S Sbjct: 177 -------YPN-----VLNQMKMGGPQQVQLRCKVMEVQRSKLRSLGLNFTYLGRNVAFSS 224 Query: 223 SSG---PSKSFAADFGGKF---VSEGG----DFSVKGVLDRFSFETVLHALERATAIRTL 272 + G P +F GG +++ G S+ V D F+F +L AL ++ Sbjct: 225 TPGAISPLDAFTVPIGGPPGVGLAQSGFRNATMSLGIVGDDFAFGGLLEALREEGLLKIQ 284 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 AEPT+ SG+ A SGG+ V G ++ ++GV L P +LSP R+ I Sbjct: 285 AEPTIVTRSGEPAKIVSGGEFPIP-VPQGLGTIAIEWREFGVRLESVPMILSPNRLKQTI 343 Query: 333 QTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 EVSE + +N+ +P R +T VE+ G T+ + GL+ IP L Sbjct: 344 IAEVSERDLTNAVTLNSTTVPGLTKRTVETQVEMNFGQTLAIGGLISSRKTAQTSKIPFL 403 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 ++P +GA FR ++ ETE+ + TP V AM PD Sbjct: 404 GELPYVGAAFRRVNYDEAETELLVLITPEFVS--AMDPAQVPD 444 >gi|225872754|ref|YP_002754211.1| type II/III secretion system protein [Acidobacterium capsulatum ATCC 51196] gi|225792181|gb|ACO32271.1| type II/III secretion system protein [Acidobacterium capsulatum ATCC 51196] Length = 480 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 109/386 (28%), Positives = 181/386 (46%), Gaps = 33/386 (8%) Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 + + L ++ V VSDP + SP + + K G +++++ G+ + + Sbjct: 63 RSMFLDTATPLKRVYVSDPAVLNSFTASPHQVLITAKAPGISSLVVWDESGRSNV-YTVS 121 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + D++ L+ + I + D V L G V T ++ A +L++ + Sbjct: 122 SDIDVSGLQAAINAAFPHDMIHASALQDRVTLTGEVATESEAAAAEKLAQGY-------- 173 Query: 176 YANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGP 226 +K V N +++A + QV LKV AEV R +Q+GF ++TG+ P Sbjct: 174 -----AKTVENSIDLAPQRVQQVQLKVRFAEVDRTRAQQLGFNFISAGRNAAVTGTQQFP 228 Query: 227 SKS---FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S S + ++ + + + ALE ++ LAEPT+T+ISG Sbjct: 229 SFSNYTLGGNSTANPITVSNPLDLLLYSSDLNLGATIQALENDQVLQILAEPTITSISGV 288 Query: 284 SASFTSGGQHLYKTVSS-STGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSE-- 338 ASF SGGQ + V +TG TSVT YGV L FTP V G I L++ EVS Sbjct: 289 EASFLSGGQFPFPVVQGGTTGFTSVTVQFRPYGVKLDFTPYVNPDGTIRLKVAPEVSALD 348 Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + ++ +P+ R+A T V L +G + ++GLL + E +P +S+IPILG Sbjct: 349 YTNEVQISGYSIPAIDTRRAKTEVVLKNGQSFAISGLLDHRLTNDYERMPGISRIPILGQ 408 Query: 397 LFRNSRFNREETEIFIAATPFLVKPV 422 LFR+ + T++ + TP +V P+ Sbjct: 409 LFRSYQKQASTTDLIVIVTPTIVDPL 434 >gi|260768627|ref|ZP_05877561.1| type II and III secretion system protein [Vibrio furnissii CIP 102972] gi|260616657|gb|EEX41842.1| type II and III secretion system protein [Vibrio furnissii CIP 102972] Length = 387 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 125/248 (50%), Gaps = 24/248 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSE---GGDF-- 245 QV + + EV + LK+ GF G SG + + AA GG F E G F Sbjct: 104 QVQTDIKVVEVSKSALKEAGF---FFGKQSGNTTFGIGNNAALNGGNFAGELLSGNSFLP 160 Query: 246 ------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 V G + R T+ AL TLAEP+L +SG +A+F +GG+ Y + Sbjct: 161 LSNAFNVVIGDMSRGILSTI-SALNANGFAYTLAEPSLVTMSGHTATFLAGGEFPYPK-A 218 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRK 355 SS G ++ ++GV L+ +PTV+ RI L++ EVSE + +P VR+ Sbjct: 219 SSDGDITIEFKEFGVRLNLSPTVMKDNRIMLKVAPEVSELNYNNAVSTGGVLVPGMSVRR 278 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 DTTV+L G T V++GL+ + P L IPILGA F ++RF + + E+ + T Sbjct: 279 TDTTVQLGDGETFVISGLISSSTMNNSDRFPGLGDIPILGAFFSSTRFEKNDKELMMVVT 338 Query: 416 PFLVKPVA 423 P LVKP+A Sbjct: 339 PHLVKPIA 346 >gi|77456876|ref|YP_346381.1| type II and III secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77380879|gb|ABA72392.1| putative Flp pilus assembly protein, secretin [Pseudomonas fluorescens Pf0-1] Length = 422 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 113/389 (29%), Positives = 177/389 (45%), Gaps = 52/389 (13%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 +E+G+G + ++ Q PV + V V DP ADV V + + L G G A ++ Sbjct: 42 LEVGEGLQQAV--------QSPVAITRVAVGDPKIADVRVTGDQGVLLTGVGPG-ATTLM 92 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 I ++ + A MT + S + +Q R V Sbjct: 93 IWTACASTPRQSMVFVQGKASAAMTAAALPSSSE------------PNLPSQVQTDIRFV 140 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 E+S T L ++G + Y S+ + VT V +L +I Sbjct: 141 EVSRTKLKEAGTSIYGKGSNNFLFGAPGTVPNTGVTPGVV------PLL-------NIDP 187 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + PS A D + GG S F +++ALE + TLA P+L A+S Sbjct: 188 RIAAPSIPLANDMFN--IVWGGGSS--------KFLGIVNALEGSGFAYTLARPSLVALS 237 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQSASF +GG+ S+++ + S+ ++G+ L TPTV+S RI L++ EVSE + Sbjct: 238 GQSASFLAGGEVPIPVPSANSNSYSIEYKEFGIRLTLTPTVVSNDRIALKVAPEVSE--L 295 Query: 342 GVNAG------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 N G +P++ +R+ DT++ L G + V++GL+ P L IP+LG Sbjct: 296 DYNNGVTIGGTKVPAFTIRRTDTSISLADGESFVISGLISTRNASEVNKFPGLGDIPVLG 355 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424 A FRNS NREE E+ + TP LV+P+A+ Sbjct: 356 AFFRNSSINREERELLMIVTPHLVQPLAV 384 >gi|293391332|ref|ZP_06635666.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter actinomycetemcomitans D7S-1] gi|32452623|gb|AAP43985.1| RcpA [Aggregatibacter actinomycetemcomitans] gi|290951866|gb|EFE01985.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 460 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 101/391 (25%), Positives = 182/391 (46%), Gaps = 25/391 (6%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114 ++Q + + VS P AD + + ++ K G+ V G DG+ + +N+D Sbjct: 41 LVQTKEKIDTIFVSSPNIADYEILDDNSFIIYAKEEGRTEVTAFGVDGRPLTSDTVNVDS 100 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163 ++ IA L+ ++N+ V+ V V+ G R+ ++S +R V ++ Sbjct: 101 VV-TSIADTNKQLKSHFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGNGRKI 159 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +ET L + V++ NIA Q+ +K+++ EV + + + +G S + Sbjct: 160 TETKLGEDALPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHV-AG 218 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 SGP FGG F G LD ++AL+ + + LAEP ++ +SG+ Sbjct: 219 SGPLLGGNFGFGGGFNGNQGVLR----LDAKGISAFINALDNQSNGKVLAEPNISMLSGE 274 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +A GG+ + G+ ++ ++G+ L + RI L + VS Sbjct: 275 TADILVGGEIPFAQ-RDKDGSPTIIYKEFGIKLAVAAKLQKNDRIRLALDQSVSTIAGNY 333 Query: 344 N---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 N G++P + RKA + E+ +G + ++ GL + + +PLL IPILG+ FRN Sbjct: 334 NFEGVGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRN 393 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + R++ E+ I AT +VKPV +D+ PD Sbjct: 394 ATTERDKKELVIVATVNVVKPVNEKDVVYPD 424 >gi|78486068|ref|YP_391993.1| type II and III secretion system protein [Thiomicrospira crunogena XCL-2] gi|78364354|gb|ABB42319.1| Flp (type IV) pilus assembly protein CpaC homolog [Thiomicrospira crunogena XCL-2] Length = 520 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 153/305 (50%), Gaps = 28/305 (9%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVR-----------RDILKQIG-FQHSITGSSSGPS-KSF 230 V+N++++ G+ Q+ L V +AEV RD + G F G+ + S + Sbjct: 215 VVNMIDVTGKSQIKLSVRVAEVVKGNPFKSGVAIRDKKDRFGIFPPGNLGTQALFSLNNS 274 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 D G F + + S VL LE R LA+P L SG++A+F G Sbjct: 275 PGDTAGISFPHPDAFQIGFNPENGSIFGVLSLLEGHNLARVLAKPELIVQSGETATFLVG 334 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--- 347 G+ + V+ + +V+ +YGV L F+P V G I + ++ EVS+ ++A + Sbjct: 335 GE-VAIPVAQNADTITVSYKEYGVRLRFSPIVTESGDIQMTVEPEVSD----IDAANGTQ 389 Query: 348 -----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +PS+R RK TT+ L G + ++ GLL+D+I+ +P+L IPILGALFR++ Sbjct: 390 TNNIIIPSFRSRKTSTTITLAPGQSFIIGGLLQDNIRSQVSKVPVLGDIPILGALFRSNS 449 Query: 403 FNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + +++E+ I TP V PV A + +S P ++ + AFF +V ++ P+ S + Sbjct: 450 YVHDKSELAIMVTPTFVAPVDAGKKVSLPGENLKRPSNMDAFFLGKVAEVL-PEGESALP 508 Query: 462 GQNYK 466 N K Sbjct: 509 ESNVK 513 >gi|110833080|ref|YP_691939.1| type II secretion system protein [Alcanivorax borkumensis SK2] gi|110646191|emb|CAL15667.1| type II secretion system protein, probable [Alcanivorax borkumensis SK2] Length = 406 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 123/240 (51%), Gaps = 28/240 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV + I EV R L GF++S A+ GG G D F Sbjct: 141 QVQTDIRIMEVSRSKLNSFGFEYSNIFDGGNTQVGVASPGGG------------GPSDSF 188 Query: 255 SF-------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + T+++ALE TLA+P+LTA+SGQ+A+F SGG+ T S + G V Sbjct: 189 NLFRLGKNSTTIINALESGGFAYTLAKPSLTALSGQTATFLSGGEFPVPTRSDNNGV-QV 247 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRKADTTVE 361 +G+ L TPTV+S +I L++ EVSE + +AG +P RVR+++TTV Sbjct: 248 EFKSFGIGLALTPTVISGDQIILKVAPEVSE--LDFSAGVESAGTSIPGLRVRRSETTVS 305 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L G T +++GL+ + IP L +P+LGA FR+ + +RE+ E+ + TP LV P Sbjct: 306 LAPGETFIISGLVSQNTVNNSNRIPGLGNLPVLGAFFRSGQLSREDKEMVMVVTPHLVSP 365 >gi|167836794|ref|ZP_02463677.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 423 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 124/417 (29%), Positives = 187/417 (44%), Gaps = 59/417 (14%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPRT-MYL 89 A AA + ++ G ++I++G VQ V + DP ADV V+ R + L Sbjct: 2 AQAAEMGAIELTTGAQRQIAVGRG----------VQRVAIGDPNVADVLVIKGGRGGVLL 51 Query: 90 FGKNVGQANVILI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 K G ++++ G D + +D++ R + V T V+ Sbjct: 52 VAKAAGSTSLMVWERGRDEPAVYTVDVV--------SGAARALLDGGAPGVRAYDGTAVV 103 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T+ RA+ + + + G A++ + G++ V + V + E R Sbjct: 104 SGSAATLDAHARALAVGKGMAGKGGGVVDAST----------VGGKNVVQVDVRVVEFSR 153 Query: 208 DILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------VKGV 250 +LKQ G F G + G SFA G V+ GG S V G Sbjct: 154 SVLKQAGLNFFKQNNGFTFG---SFAPA-GLASVTGGGTSSMSVSANIPIASAFNLVVGS 209 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R F L LE R LA+PTL A+SGQSASF +GG+ + V S G S+ Sbjct: 210 ATRGLFAD-LSILEANNLARVLAQPTLVALSGQSASFLAGGE-IPVPVPQSLGTISIDWK 267 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGG 366 YGV L TPTVLSP RI L++ E S+ I +N +P+ R+ADTTVEL G Sbjct: 268 PYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGE 327 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + V+ GL+ + + +P L +PI+G F++ + + + E+ I TP LV P+A Sbjct: 328 SFVIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA 384 >gi|188592032|ref|YP_001796630.1| type II secretion system protein; precursor [Cupriavidus taiwanensis LMG 19424] gi|170938406|emb|CAP63393.1| putative Type II secretion system protein; putative precursor [Cupriavidus taiwanensis LMG 19424] Length = 475 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 132/258 (51%), Gaps = 30/258 (11%) Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGF--------------------QHSITGSSSGPSKS 229 ++G QV +KV E+ + +LK++G + + T S G S Sbjct: 184 LSGTVQVDVKVV--EISKTVLKEVGINFFRNNSGFAFGTFSPSTLNKFTFTPGSGGAPGS 241 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 F+AD + F++ + LE R LAEP+L A+SGQSASF + Sbjct: 242 FSADIASPMSNA---FNLVAASLTHGIFANISLLEANGLARVLAEPSLVALSGQSASFLA 298 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PV--IGVNA 345 GG+ + V + G T++ +G+ L +PTVLS RI L++ E S+ P I +N Sbjct: 299 GGE-IPIPVPQALGTTTIQFKPFGIGLTVSPTVLSADRIALKVAPEASDLDPSRGISING 357 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ R+ADTTVEL G + V+ GL+ + +P+L +P++GA F+N F++ Sbjct: 358 AVVPAIVTRRADTTVELGDGESFVIGGLVSRNTVSNVNKVPVLGDLPVIGAFFKNLNFHQ 417 Query: 406 EETEIFIAATPFLVKPVA 423 E+ E+ I TP LVKP+A Sbjct: 418 EDRELMIVVTPRLVKPMA 435 >gi|104779900|ref|YP_606398.1| type II/IV secretion system protein D [Pseudomonas entomophila L48] gi|95108887|emb|CAK13583.1| Putative type II/IV secretion system protein D [Pseudomonas entomophila L48] Length = 426 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 104/173 (60%), Gaps = 4/173 (2%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F +++ALE + TLA P+LT +SG +ASF +GG+ SS + S+ ++GV Sbjct: 216 FLAMINALENSGFAYTLARPSLTVLSGLTASFLAGGEIPIPVPSSGSDNVSIEYKEFGVR 275 Query: 316 LHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 L TPTV+S RI L++ EVSE + + +P VR+ DT++ L G + +++ Sbjct: 276 LALTPTVVSGNRINLKVAPEVSELDYNNAVVIAGTRVPGLSVRRTDTSITLADGESFIIS 335 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 GL+ +++ + +P L +PI+GA FR + NREETE+ + TP LV+P+A+ Sbjct: 336 GLITSNVRSGVDKMPGLGNLPIIGAFFRQTALNREETELLMIVTPHLVQPLAV 388 >gi|229588195|ref|YP_002870314.1| putative type II secretion system protein [Pseudomonas fluorescens SBW25] gi|229360061|emb|CAY46915.1| putative type II secretion system protein [Pseudomonas fluorescens SBW25] Length = 405 Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 110/408 (26%), Positives = 181/408 (44%), Gaps = 75/408 (18%) Query: 28 PIKEANAAVINISD-------VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80 P+ A AA N S VE+G+G + LQ PV + + + DP ADV Sbjct: 22 PVGMALAAPGNCSALGQLPAVVEVGEGLQQE--------LQSPVAITRLAIGDPKIADVR 73 Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE-RDIAHLEMTLRRFIADSNIRVE 139 V+ R L G G ++++ + ++ R + L D + + Sbjct: 74 VNGDRHFLLTGVASGATSLMVWTACASTPRQSMVFVKGRATSALTSLSLSPSEDPLLPSQ 133 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + +D +R ++ S+ ++ + T L +G+N + S N+ + K Sbjct: 134 VQTD-------IRFVEVSRTKLKEASTRLLGTGKNFFLGSP--------NLLSPSEGVFK 178 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 + ++ + SF FGG VS + Sbjct: 179 LPVS-----------------------TDSFNVGFGGGRVS-----------------AM 198 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 ++ALER+ TLA P+L A+SGQSASF +GG+ S+ + S+ ++G+ L T Sbjct: 199 INALERSGFAYTLARPSLVAMSGQSASFLAGGEVPVPVPSAGSDTISIEYKEFGIRLTLT 258 Query: 320 PTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PTV+ RI L++ EVSE + + +P+ VR+ DT+V L G + V++GL+ Sbjct: 259 PTVIDRNRITLKVAPEVSELDYSNAVIIQGIQVPALTVRRTDTSVSLADGESFVISGLIS 318 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + + P L IPILGA FR+S +REE E+ + TP LV+P+A Sbjct: 319 TNNRSTISKFPGLGDIPILGAFFRDSNISREEKELLMIVTPHLVQPLA 366 >gi|116694140|ref|YP_728351.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16] gi|113528639|emb|CAJ94986.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16] Length = 470 Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 132/258 (51%), Gaps = 30/258 (11%) Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGF--------------------QHSITGSSSGPSKS 229 ++G QV +KV E+ + +LK++G + + T S G S Sbjct: 179 LSGTVQVDVKVV--EISKTVLKEVGINFFRNNSGFAFGTFSPSTLNKFTFTPGSGGAPGS 236 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 F+AD + F++ + LE R LAEP+L A+SGQSASF + Sbjct: 237 FSADIASPMSNA---FNLVAASLTHGIFANISLLEANGLARVLAEPSLVALSGQSASFLA 293 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PV--IGVNA 345 GG+ + V + G T++ +G+ L +PTVLS RI L++ E S+ P I +N Sbjct: 294 GGE-IPIPVPQALGTTTIQFKPFGIGLTVSPTVLSADRIALKVAPEASDLDPSRGISING 352 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ R+ADTTVEL G + V+ GL+ + +P+L +P++GA F+N F++ Sbjct: 353 AVVPAIVTRRADTTVELGDGESFVIGGLVSRNTVSNVNKVPVLGDLPVIGAFFKNLNFHQ 412 Query: 406 EETEIFIAATPFLVKPVA 423 E+ E+ I TP LVKP+A Sbjct: 413 EDRELMIVVTPRLVKPLA 430 >gi|322434104|ref|YP_004216316.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] gi|321161831|gb|ADW67536.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] Length = 484 Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 119/439 (27%), Positives = 205/439 (46%), Gaps = 48/439 (10%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 ++G + + + + ++L +++ + V +PT P + L K G +++++ Sbjct: 55 DMGGDETLHLLVGHSMVLHSTSNIKRIFVGNPTVLQSYTGGPSEIVLTAKATGVSSLVVW 114 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G+ L I + D L+ ++ S I V + L G V T + S A + Sbjct: 115 DTQGQSCL-YTIAADMDPETLQRSMHDAYPKSQIDVGGHEGRIFLSGTVPTQEASDNAFK 173 Query: 163 LSETFLSQSGRNQYANSSSKKVMN---LLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--- 216 L A+S SK V+N ++ I G+ QV LK+ I EV R ++Q G Sbjct: 174 L-------------ASSYSKDVVNSIRVVTIHGK-QVQLKLRIVEVDRTKMEQFGINLFR 219 Query: 217 ----HSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFE------TVLH 261 +++ G ++G S A G + +V L+ F + + Sbjct: 220 PTASNAVGGLTTGQFPSLATYATGTPATATAPAVPATINVNNPLNFFIYSFSHEIGATIQ 279 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLH 317 LE+ ++ LAEPTLTA+SGQSA F SGG+ + V S++ A +++ YGV + Sbjct: 280 DLEQKQILQVLAEPTLTAMSGQSAKFLSGGEFPFPVVQGGGSAAGVAITISFRPYGVKVD 339 Query: 318 FTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 FTPTV G I L++ EVS + ++ +P+ R+A+T VE+ +G T L GL Sbjct: 340 FTPTVNEDGSIHLKVAPEVSTLDFSNAVTISGFTIPALSTRRAETEVEILNGQTFALTGL 399 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSR-FNREETEIFIAATPFLVKPVAM-RDLSRPD 431 L + IP +S++PILG LF ++ + E+ + T +V P+ D ++PD Sbjct: 400 LDHRTTESLSQIPGISRLPILGKLFATTKSYTHSVIELVVLVTANVVDPLTQPTDTTQPD 459 Query: 432 DHYSVEDDAKAFFFNRVNK 450 +V + K+ F N ++K Sbjct: 460 --MAVPNLDKSVFDNDLSK 476 >gi|254429436|ref|ZP_05043143.1| Bacterial type II and III secretion system protein [Alcanivorax sp. DG881] gi|196195605|gb|EDX90564.1| Bacterial type II and III secretion system protein [Alcanivorax sp. DG881] Length = 384 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 127/244 (52%), Gaps = 26/244 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--- 251 QV + + EV R L Q+G +S + + + AA G F V G + Sbjct: 108 QVQTDIRVLEVSRSELNQLGMSYSNSFNGGQSAVGIAA--------PGSGFQVPGAVPTP 159 Query: 252 ------DRFSFET----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + F F ++ALE TLAEP+LT++SGQSASF SGG+ T S++ Sbjct: 160 LGTEGFNLFGFGANSVLAINALEAGGFAYTLAEPSLTSLSGQSASFLSGGEFPVPTRSTT 219 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDM--PSYRVRKAD 357 G + ++G+ L TPTV+ +I L++ EVSE GV G + P RVR+A+ Sbjct: 220 DG-VQIEFKEFGIGLSLTPTVIDKSQIILKVAPEVSELDFSAGVETGGVAVPGLRVRRAE 278 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTV L G T +++GL+ + + +P + IP+LGA FR+SR +++ E+ + TP Sbjct: 279 TTVSLAPGETFIISGLVSRNTINSSDRLPGIGNIPLLGAFFRSSRIQKDDKELVMVVTPH 338 Query: 418 LVKP 421 LV P Sbjct: 339 LVTP 342 >gi|319943382|ref|ZP_08017664.1| type II and III secretion system protein [Lautropia mirabilis ATCC 51599] gi|319743197|gb|EFV95602.1| type II and III secretion system protein [Lautropia mirabilis ATCC 51599] Length = 434 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 93/310 (30%), Positives = 150/310 (48%), Gaps = 43/310 (13%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 +S +R + D ++L G T + + RA EL + + +V++L++ G Sbjct: 113 NSGVRARALGDRILLEGQNPTEEGAWRAAELVKRY--------------PQVISLVSRRG 158 Query: 193 EDQ-VTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADF--GGKFVSEGGDF 245 +Q + L+V + E+ R+ LKQ+G + G+ SGPS DF G F+ EGG Sbjct: 159 YEQMINLEVKMIEIGRNALKQLGVRWQGGGAGDWAVSGPSFGVIGDFKRSGAFLPEGGAA 218 Query: 246 SVKGVLDRFSFETVLHALERATAIR-----------------TLAEPTLTAISGQSASFT 288 + +G F+ +H + ++ LAEP L+ SG A F Sbjct: 219 ATRG----FAVAPRIHPFATSASMVSSLSSMIDLMVQNGDAAVLAEPRLSTRSGGKARFV 274 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 +GG+ L V S+ GA +V +YGV P V + G I + TEVS V + Sbjct: 275 AGGE-LPIPVLSANGAANVDFKEYGVRFEVEPVVNAQGVISASLHTEVSSIDDEVTVMGV 333 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P R + ++T V L G T+V+AG++++++ IP L +PILG LFR+ RF + E+ Sbjct: 334 PGLRKQSSNTDVNLRPGETLVIAGMVRNEMSGAITKIPGLGDLPILGHLFRSKRFRQRES 393 Query: 409 EIFIAATPFL 418 E+ + TP L Sbjct: 394 EMVVLITPRL 403 >gi|94312586|ref|YP_585795.1| pilus assembly protein [Cupriavidus metallidurans CH34] gi|93356438|gb|ABF10526.1| pilus assembly protein [Cupriavidus metallidurans CH34] Length = 473 Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 111/379 (29%), Positives = 185/379 (48%), Gaps = 39/379 (10%) Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 ++ V V +P AD L K+ G + +L+ + +L I RD+A + Sbjct: 73 LERVAVGNPEVADA---------LLLKHRGGPSTVLVVARKPGVTDLKIW-SRDVAPVSY 122 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYANSSSKKV 184 T+R D+ +R + +V L +I +S A + T ++ A+ V Sbjct: 123 TVR---VDA-VRPDPGGASVDLSSAGASISGESPDAPAAARTLMAARAAVSSADGKRAGV 178 Query: 185 M---NLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSG---PSKSFAADFG- 235 + + + ++G QV +KV E+ + +LK+IG F G + G PS A F Sbjct: 179 VVDRSTVPVSGTVQVDVKVV--EISKTVLKEIGLNFYRDNGGFAFGTFSPSSLTKATFTP 236 Query: 236 --GKFVSEGGDFS-----VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G V S + G + + F L +E +R LAEP+L A+SGQSASF Sbjct: 237 GVGTVVDSVSPISSAFNLIAGSVSKGIFAN-LSLMEANGLVRVLAEPSLVALSGQSASFL 295 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGV--N 344 +GG+ + V + G T++ +G+ L +PTV+S RI L++ E S+ P G+ N Sbjct: 296 AGGE-IPIPVPQALGTTTIQYKPFGIGLTVSPTVMSRERIALKVAPEASDLDPSRGIVLN 354 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ R+ADTT+EL G + V+ GL+ + +P L +P++G+ F+N F+ Sbjct: 355 GATVPAIVTRRADTTIELGDGESFVIGGLVSRNTVSNVSKVPFLGDLPVIGSFFKNLNFH 414 Query: 405 REETEIFIAATPFLVKPVA 423 +E+ E+ I TP L+KP+A Sbjct: 415 QEDRELMIVVTPHLIKPLA 433 >gi|194335913|ref|YP_002017707.1| type II and III secretion system protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308390|gb|ACF43090.1| type II and III secretion system protein [Pelodictyon phaeoclathratiforme BU-1] Length = 510 Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 104/412 (25%), Positives = 179/412 (43%), Gaps = 64/412 (15%) Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 ++ V + DP AD ++ + +YL GK +G N+ + +G + + + + R L+ Sbjct: 73 IKRVAMGDPKVADYIMLNRFEVYLLGKKMGSTNLAVWDQNG-NLTSSPVQVSRGTTALQA 131 Query: 126 TLR-RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS---QSGRNQYA---- 177 L+ F +++I + + +VL G V ++ L ++ SG + A Sbjct: 132 LLKVLFPKENDIHLLALGPALVLSGSVSDALVAESVARLVRSYFGGSVSSGTPESALVGT 191 Query: 178 ----------------------------------NSSSKKVMNLLNIAGEDQVTLKVTIA 203 + S++ V+NLL + QV L+V IA Sbjct: 192 DSKPFTGIIEEMSKDVVFSKTESHSKETTTHGGESDSTRGVVNLLKVRDSQQVRLEVCIA 251 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 +V R ++ +G T S + FVS ++ + + A Sbjct: 252 QVSRTFIESLGISFFKTSGDIQGSTLLSG-----FVSNATLNNLLLGRLGQANGIKMVAD 306 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YG 313 + + + LAEPT+ +SG+ F GG+ ++ +D YG Sbjct: 307 RKPSLFKVLAEPTIVTMSGKEGFFLVGGKIYVPVRVIDYSPINLQEYDKYYISYKEYLYG 366 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 V L F P VL GRI L++ +EVSEP G A ++P +++ T V++ G + Sbjct: 367 VGLRFMPVVLDAGRISLKVVSEVSEPDTESATSGTKA-NLPLFKISTVSTNVQMNEGENL 425 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 V+ GL D+ + +PLLS+IPILGALFR+++ N E+TE+ + P LVK Sbjct: 426 VIGGLKLDNFANAIDSVPLLSEIPILGALFRDTKKNAEKTELMVIIRPTLVK 477 >gi|4768955|gb|AAD29695.1| rough colony protein A [Aggregatibacter actinomycetemcomitans] Length = 460 Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 101/391 (25%), Positives = 182/391 (46%), Gaps = 25/391 (6%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114 ++Q + + VS P AD + T ++ K G+ V G DG+ + +N+D Sbjct: 41 LVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 100 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163 ++ IA L+ ++N+ V+ V V+ G R+ ++S +R V ++ Sbjct: 101 VV-TSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGEARSQEESDEVRRIVGEALGSGRKV 159 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +ET L + V++ NIA Q+ +K+++ EV + + + +G S + Sbjct: 160 TETKLGEDSLPFLDKYHYDDVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHV-AG 218 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 SGP FGG F G LD ++AL+ + + LAEP ++ +SG+ Sbjct: 219 SGPLVGGNFGFGGGFNGNQGVLR----LDAKGISAFINALDNQSNGKVLAEPNISMLSGE 274 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +A GG+ + G+ ++ ++G+ L + RI L + VS Sbjct: 275 TADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNY 333 Query: 344 N---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 N G++P + RKA + E+ +G + ++ GL + + +PLL IPILG+ FR+ Sbjct: 334 NFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRS 393 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + R++ E+ I AT +VKPV +D+ PD Sbjct: 394 ATTERDKKELVIVATVNVVKPVNEKDVVYPD 424 >gi|8096202|dbj|BAA96101.1| unnamed protein product [Actinobacillus actinomycetemcomitans] Length = 460 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 101/391 (25%), Positives = 182/391 (46%), Gaps = 25/391 (6%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114 ++Q + + VS P AD + T ++ K G+ V G DG+ + +N+D Sbjct: 41 LVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 100 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163 ++ IA L+ ++N+ V+ V V+ G R+ ++S +R V ++ Sbjct: 101 VV-TSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKV 159 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +ET L + V++ NIA Q+ +K+++ EV + + + +G S + Sbjct: 160 TETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHV-AG 218 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 SGP FGG F G LD ++AL+ + + LAEP ++ +SG+ Sbjct: 219 SGPLVGGNFGFGGGFNGNQGVLR----LDAKGISAFINALDNQSNGKVLAEPNISMLSGE 274 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +A GG+ + G+ ++ ++G+ L + RI L + VS Sbjct: 275 TADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNY 333 Query: 344 N---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 N G++P + RKA + E+ +G + ++ GL + + +PLL IPILG+ FR+ Sbjct: 334 NFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRS 393 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + R++ E+ I AT +VKPV +D+ PD Sbjct: 394 ATTERDKKELVIVATVNVVKPVNEKDVVYPD 424 >gi|261867455|ref|YP_003255377.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412787|gb|ACX82158.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 420 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 101/391 (25%), Positives = 182/391 (46%), Gaps = 25/391 (6%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114 ++Q + + VS P AD + T ++ K G+ V G DG+ + +N+D Sbjct: 1 MVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 60 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163 ++ IA L+ ++N+ V+ V V+ G R+ ++S +R V ++ Sbjct: 61 VV-TSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKV 119 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +ET L + V++ NIA Q+ +K+++ EV + + + +G S + Sbjct: 120 TETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHV-AG 178 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 SGP FGG F G LD ++AL+ + + LAEP ++ +SG+ Sbjct: 179 SGPLVGGNFGFGGGFNGNQGVLR----LDAKGISAFINALDNQSNGKVLAEPNISMLSGE 234 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +A GG+ + G+ ++ ++G+ L + RI L + VS Sbjct: 235 TADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNY 293 Query: 344 N---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 N G++P + RKA + E+ +G + ++ GL + + +PLL IPILG+ FR+ Sbjct: 294 NFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRS 353 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + R++ E+ I AT +VKPV +D+ PD Sbjct: 354 ATTERDKKELVIVATVNVVKPVNEKDVVYPD 384 >gi|119773845|ref|YP_926585.1| putative type II and III secretion system outermembrane protein, secretin [Shewanella amazonensis SB2B] gi|119766345|gb|ABL98915.1| putative type II and III secretion system outermembrane protein, secretin [Shewanella amazonensis SB2B] Length = 423 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 116/412 (28%), Positives = 202/412 (49%), Gaps = 49/412 (11%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 +V+ V+V + V + + L G++ G +++ L DG + L +++ ++ A Sbjct: 28 NVERVVVGNGGVLSAKVLDEKNVILIGESEGLSDIQLWQKDG-TVRKLSVVVTKENAQTT 86 Query: 125 M-TLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDS--QRAVELSETFLSQSGRNQYANSS 180 + T++R +A+ +I V +V+HG Q ++ ++ + L +Y S Sbjct: 87 VGTMKRMLAEFPSIEVTESDGVIVIHGEADASQRETLEKVLDGKDNILPLIKYVKYGKSI 146 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAAD--FG- 235 E V ++V I E + L IG Q ++G + G +K+F A+ F Sbjct: 147 ------------EPMVKMEVKIVEFNKSTLNNIGVQWENVMSGPAFGAAKAFTANPIFSV 194 Query: 236 ---GKFV-SEGGDFS-VKGVLDR--FSFETVLHAL--------ERATAIRTLAEPTLTAI 280 G++ S GG S GVLD +S+ ++ + E+ A R LAEP LT Sbjct: 195 SSPGQYANSIGGAVSDAIGVLDTRGWSYFGIVTGIGSQIQLLAEKGDA-RMLAEPNLTTR 253 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--E 338 SG++ASF +GG+ +TVS G+ + +YG+ L+ P V + I R+ EVS + Sbjct: 254 SGEAASFLAGGEIPIRTVSG-VGSVDIQYKEYGIRLNIEPVVDADNNIVSRVMAEVSAVD 312 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P I + G P + R+ ++ + + + T+V++GL+ ++ ++ PLL IPILG LF Sbjct: 313 PSIQLE-GSAPGFLTRRTESVINVKNKQTMVISGLVNSEMSKVVNKFPLLGDIPILGELF 371 Query: 399 RNSRFNREETEIFIAATPFLVKP---VAMRDLSRPDDHYSVEDDAK--AFFF 445 ++ F E+TE+ I TP +V P + LSR + V+D AK AF+ Sbjct: 372 KSRNFREEKTELVIFVTPTVVYPGEDSHEKSLSRAREL--VDDAAKLEAFYI 421 >gi|307133496|dbj|BAJ19008.1| RcpA [Aggregatibacter actinomycetemcomitans] Length = 460 Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 101/391 (25%), Positives = 182/391 (46%), Gaps = 25/391 (6%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114 ++Q + + VS P AD + T ++ K G+ V G DG+ + +N+D Sbjct: 41 LVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 100 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163 ++ IA L+ ++N+ V+ V V+ G R+ ++S +R V ++ Sbjct: 101 VV-TSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKV 159 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +ET L + V++ NIA Q+ +K+++ EV + + + +G S + Sbjct: 160 TETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHV-AG 218 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 SGP FGG F G LD ++AL+ + + LAEP ++ +SG+ Sbjct: 219 SGPLVGGNFGFGGGFNGNQGVLR----LDAKGISAFINALDNQSNGKILAEPNISMLSGE 274 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +A GG+ + G+ ++ ++G+ L + RI L + VS Sbjct: 275 TADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNY 333 Query: 344 N---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 N G++P + RKA + E+ +G + ++ GL + + +PLL IPILG+ FR+ Sbjct: 334 NFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRS 393 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + R++ E+ I AT +VKPV +D+ PD Sbjct: 394 ATTERDKKELVIVATVNVVKPVNEKDVVYPD 424 >gi|307548787|dbj|BAJ19109.1| RcpA [Aggregatibacter actinomycetemcomitans] gi|307548802|dbj|BAJ19123.1| RcpA [Aggregatibacter actinomycetemcomitans] Length = 460 Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 101/391 (25%), Positives = 182/391 (46%), Gaps = 25/391 (6%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114 ++Q + + VS P AD + T ++ K G+ V G DG+ + +N+D Sbjct: 41 LVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 100 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163 ++ IA L+ ++N+ V+ V V+ G R+ ++S +R V ++ Sbjct: 101 VV-TSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKV 159 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +ET L + V++ NIA Q+ +K+++ EV + + + +G S + Sbjct: 160 TETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHV-AG 218 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 SGP FGG F G LD ++AL+ + + LAEP ++ +SG+ Sbjct: 219 SGPLVGGNFGFGGGFNGNQGVLR----LDAKGISAFINALDNQSNGKVLAEPNISMLSGE 274 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +A GG+ + G+ ++ ++G+ L + RI L + VS Sbjct: 275 TADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNY 333 Query: 344 N---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 N G++P + RKA + E+ +G + ++ GL + + +PLL IPILG+ FR+ Sbjct: 334 NFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRS 393 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + R++ E+ I AT +VKPV +D+ PD Sbjct: 394 ATTERDKKELVIVATVNVVKPVNEKDVIYPD 424 >gi|258624763|ref|ZP_05719694.1| Flp pilus assembly protein [Vibrio mimicus VM603] gi|258582925|gb|EEW07743.1| Flp pilus assembly protein [Vibrio mimicus VM603] Length = 347 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 104/331 (31%), Positives = 154/331 (46%), Gaps = 42/331 (12%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS-----------QS 171 L+ TL D +I V V D VVL G V + + + L L ++ Sbjct: 2 LKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLKKNVSKVNNHVIET 61 Query: 172 GRN------QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 G N QY A V+N L + +Q+ +K+TIAEV L ++G + G Sbjct: 62 GENNREEALQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLSELGVSYGDIG--- 118 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D G KF ++ DF+ + ++ ++ A + LAEP L+ ISG++ Sbjct: 119 ------GGDVG-KFYNKLLDFTAQDIV------AIIAASGNDDIGQVLAEPNLSVISGET 165 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 ASF GG+ T ++ +YG+ L V I L + EVS + VN Sbjct: 166 ASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLSLLPEVS-SLDSVN 222 Query: 345 AGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 D PS + RKA TTV+L G + VLAGLL + ++ IP+L IPILGALF Sbjct: 223 RSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPILGDIPILGALFS 282 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 +++ +R++TE+ I AT LV PV + P Sbjct: 283 STKSDRKKTELIIVATVNLVDPVKTEQVKLP 313 >gi|187478776|ref|YP_786800.1| pilus assembly protein [Bordetella avium 197N] gi|115423362|emb|CAJ49896.1| putative pilus assembly protein [Bordetella avium 197N] Length = 426 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 99/342 (28%), Positives = 154/342 (45%), Gaps = 37/342 (10%) Query: 85 RTMYLFGKNVGQANV-ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVS 142 + + LF + G ++V + G G + L ++ H+ + + +A +R+ +V Sbjct: 67 KEVILFARKEGVSSVHVWRGQSGVRAYALRVM-PAGFGHIRAEVEQLLAAMPALRLSVVG 125 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVT 201 +V+ G D QR L++ + +V++L G +Q V L V Sbjct: 126 HHLVIEGSGLPDHDKQRISALAQRY--------------PEVLDLTGDVGWEQMVLLDVQ 171 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + E+ R L ++G S+ S P +S A +G G + L Sbjct: 172 VVELPRARLTELGMHWSMGAEGSHPVRSHAGVWG-SLQWSGAAIGAR-----------LQ 219 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + LA P L A SG +ASF +GG+ Y+ S S YGV L TP Sbjct: 220 ALAQRGEAVFLARPRLLARSGSAASFLAGGEVPYRGAESEA---STVFKPYGVSLKITPR 276 Query: 322 VLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 + G I I+ E S +P + V AG P+ R R+A+T +PSG T+VL G L ++ Sbjct: 277 IDPRGTIRSHIEVESSSIDPTLTVPAG--PAMRTRRAETEFNVPSGQTLVLGGFLGRELS 334 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G+P LS IP+LG LF R +TE+ I TP +V+P Sbjct: 335 SETRGVPWLSDIPVLGLLFGERRQQNRDTELAIFVTPTIVRP 376 >gi|73539231|ref|YP_299598.1| type II and III secretion system protein [Ralstonia eutropha JMP134] gi|72122568|gb|AAZ64754.1| type II and III secretion system protein [Ralstonia eutropha JMP134] Length = 469 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 128/254 (50%), Gaps = 28/254 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGF--------------------QHSITGSSSGPSKSFAA 232 + V + V + E+ + +LK++G + + T + G + SF+A Sbjct: 179 SNTVQVDVKVVEISKTVLKEVGINFFRNNSGFAFGSFSPSTLSKFTFTPGTGGANGSFSA 238 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 D + F++ F + LE R LAEP+L A+SGQSASF SGG+ Sbjct: 239 DITTPISNA---FNLVAASLSHGFFANISLLEANGLARVLAEPSLVALSGQSASFLSGGE 295 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PV--IGVNAGDM 348 + V + G T++ +G+ L +PTVLS RI L++ E S+ P I +N + Sbjct: 296 -IPIPVPQALGTTTIQFKPFGIGLTVSPTVLSDQRIALKVAPEASDLDPSRGIAINGAIV 354 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ R+ADTT+EL G + V+ GL+ + +P L +P++G F+N F++E+ Sbjct: 355 PAIVTRRADTTIELGDGESFVIGGLVSRNTVSNVNKVPFLGDLPVIGPFFKNLNFHQEDR 414 Query: 409 EIFIAATPFLVKPV 422 E+ I TP LVKP+ Sbjct: 415 ELMIVVTPRLVKPL 428 >gi|307730006|ref|YP_003907230.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] gi|307584541|gb|ADN57939.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] Length = 490 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 112/429 (26%), Positives = 186/429 (43%), Gaps = 89/429 (20%) Query: 66 VQDVLVSDPTKADV-VVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 ++ V + DP+ ADV ++ +T + L GK+ G NV+L L+ + + A Sbjct: 41 LRRVAIGDPSVADVLIIKGDKTGGVLLVGKSPGSTNVMLWEQGKDAPLSYVVNVSSPAA- 99 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ------------ 170 + + V ++ D+ ++ G T++ QRAV + Q Sbjct: 100 -----KSLLGPGTPSVRVLGDSALISGSAPTMEAHQRAVAAAAIEARQRATLGTVANSAA 154 Query: 171 ------------------SGRNQYANS-SSKKVMNLLNIAGEDQVTLKVTIA-------- 203 SG + A S ++ + + G+ Q+ T+A Sbjct: 155 NSAAAGASVGRGGRGTAVSGMSGAAGSDATNGGASFASAMGDAQIYDTSTVATRSVVQVD 214 Query: 204 ----EVRRDILKQIGFQ---------------HSITGSSSGPSKSF------AADFGGKF 238 E R +LKQ+G +++ ++ GP+ SF ++ F F Sbjct: 215 VRVVEFSRTVLKQVGLNILKQNNGFTFGSFAPSALSSATYGPTPSFNSVAPISSAFNLVF 274 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 S + +G+ S +E R LAEPTL A+SGQSASF +GG+ + + Sbjct: 275 NS-----ATRGLFADLSL------MESNNLARILAEPTLVALSGQSASFLAGGE-IPVPI 322 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVR 354 G TS+ YGV L TPTVLSP RI L++ E S+ + ++ +P+ R Sbjct: 323 PQGLGTTSIEYKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAITTR 382 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + DTTVEL G + V+ GL+ + +PLL +P++GA F+ + + + E+ I Sbjct: 383 RTDTTVELGDGESFVIGGLIDRETISNVAKVPLLGDLPVIGAFFKQLNYQQNDKELVIIV 442 Query: 415 TPFLVKPVA 423 TP LV P+A Sbjct: 443 TPHLVSPLA 451 >gi|255658704|ref|ZP_05404113.1| putative type II/III secretion system protein [Mitsuokella multacida DSM 20544] gi|260849091|gb|EEX69098.1| putative type II/III secretion system protein [Mitsuokella multacida DSM 20544] Length = 548 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 108/425 (25%), Positives = 188/425 (44%), Gaps = 57/425 (13%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +SI LN+ L ++ V +++P ADV + ++ + G + G + + +G + Sbjct: 31 LSIDLNQSYYLNTGRNITRVAIANPKIADVSLLDGTSLNVIGISPGTTTLNVWASNGYR- 89 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR---------TI------ 154 I + + L ++ I ++RV+M+ ++L G V+ TI Sbjct: 90 YEYRITVSDQDSGLAKIVQDAIGLPDVRVQMIGGKILLRGTVKNQYERNLAYTIAKLYAK 149 Query: 155 -------QDSQRAVELSETFLSQSGRNQYAN-----------------SSSKKVMNLLNI 190 QD + V +E+ S + +Y N S+ V+NLL + Sbjct: 150 GSNSSPSQDQGQYVSTTESKSSMTPDGRYENKTVTNDSYQRTPRDTSGSTGDSVVNLLEM 209 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFGGKFVSE-------G 242 DQ+ ++ E+ K +G ++ S S D G + E G Sbjct: 210 TNPDQINIEAMFVELGTSDAKNLGINYASQDMSDTDSSGIKMNDVGTYYAGESYGRQRSG 269 Query: 243 GD--FSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G+ ++ + FS +HAL R ++ P +T +SG++AS GG+ Y+ S Sbjct: 270 GNHWYNSNWLFTHFSKINAEIHALIENGKARVISRPNVTTMSGKNASILIGGEVPYQE-S 328 Query: 300 SSTGATSVTTHDYGVVLH-FTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVR 354 + G+T+ + YG+ + + PTV G I ++T+VS + + MP R Sbjct: 329 NGFGSTTTSYKTYGIGIQLWKPTVDQDGNITTELETQVSRLDWNNAVTKDGYRMPGIATR 388 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 A TTV +PSG T+V+ GLL + + +PLL IPILG LF+ +R++TEI + Sbjct: 389 SAYTTVNIPSGMTMVIGGLLNSNDANTIQKVPLLGNIPILGELFKYHNKSRQKTEIVVLI 448 Query: 415 TPFLV 419 TP +V Sbjct: 449 TPRVV 453 >gi|330873797|gb|EGH07946.1| type II/III secretion system protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 384 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 105/367 (28%), Positives = 162/367 (44%), Gaps = 51/367 (13%) Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE-RDIA 121 PV + + V DP ADV V+ L G G ++++ + + R A Sbjct: 24 PVAIPRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACATAPRQSMVFVRGRATA 83 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + T+ AD+ + ++ +D R +E+S T L Q+G + + S+ Sbjct: 84 SMVETVPAPSADAELPSQVQTDI--------------RFIEVSRTKLKQAGTSIFGKGSN 129 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKFVS 240 + G VT+ G+ SG S A+ V Sbjct: 130 NFLF------GAPGTVPGVTVTP----------------GTVSGALPSIPLAESAFNIVW 167 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 GG V G +L+ALE + TLA P+L A+SGQSASF +GG+ ++ Sbjct: 168 GGGSSKVLG---------ILNALENSGFAYTLARPSLVALSGQSASFLAGGEFPVPVPNT 218 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356 S+ ++GV L TPTV+ RI L++ EVSE I + +P R R+ Sbjct: 219 EGNGISIEYKEFGVRLTLTPTVVGRNRILLKVAPEVSELDFTSEISIAGTTVPIIRTRRT 278 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT++ L G + V++GL+ E P L IPILGA FR+S+ R+E E+ + TP Sbjct: 279 DTSIALADGESFVVSGLINTSNISTVEKFPGLGDIPILGAFFRSSKIQRDERELLMIVTP 338 Query: 417 FLVKPVA 423 LV+P+A Sbjct: 339 HLVQPLA 345 >gi|284048526|ref|YP_003398865.1| type II and III secretion system protein [Acidaminococcus fermentans DSM 20731] gi|283952747|gb|ADB47550.1| type II and III secretion system protein [Acidaminococcus fermentans DSM 20731] Length = 590 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 102/384 (26%), Positives = 177/384 (46%), Gaps = 33/384 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V +P ADV + S L GK G +++ +G++ N + + A ++ Sbjct: 49 VGNPEIADVRLLSGNDFLLVGKKPGSTTLLVWSDNGREEYN--VFVSGSDAGTAQAIQEA 106 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL-SQSGRNQYANSSSKK------ 183 I ++V+M++ V+L G V+ + A+++++ +L S G A + K+ Sbjct: 107 IGYPEVQVQMMNGKVLLRGRVQNQYEHDSAIKVAQMYLGSGGGTTSTAQAGGKEGTAAQG 166 Query: 184 ------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADF 234 ++++L++ QV L I E+ K +G Q+ ++ +++G S S Sbjct: 167 GTTDSNIIDMLDMTEPTQVRLVAQIIEINTSAEKDLGIQYWSPTLGDNTTGNSNSTDITR 226 Query: 235 G--GKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASF 287 G G F + + +G F + L AL + R L+ P++T +SGQ A Sbjct: 227 GTPGLFYAGENFYKQRGSFGWFGSHLSNLNASLQALVTSGKARILSRPSITTMSGQKAKI 286 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNA 345 GG+ T S+ G ++ DYGV L P V + +I ++ EVS G V Sbjct: 287 LIGGRIPIPT-SAGDGQIAIDWRDYGVKLDIEPVVDADNKITSKVHAEVSTLDYGHSVKE 345 Query: 346 GD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 D +P+ R+A+ + + SG T+ + GLL + + IPLL IPI+G FR++ Sbjct: 346 NDFSIPAIASREAEAMINVRSGMTMAIGGLLNSEDSKSVSKIPLLGDIPIIGQFFRHTST 405 Query: 404 NREETEIFIAATPFLV---KPVAM 424 R+ E+ I TP LV PV+M Sbjct: 406 TRDNRELLILITPLLVGDDSPVSM 429 >gi|26000712|gb|AAN75208.1| RcpA [Aggregatibacter actinomycetemcomitans] Length = 460 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 100/391 (25%), Positives = 181/391 (46%), Gaps = 25/391 (6%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114 ++Q + + VS P AD + T ++ K G+ V G DG+ + +N+D Sbjct: 41 LVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 100 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAV--------EL 163 ++ IA L+ ++N+ V+ V V+ G R+ ++S +R V ++ Sbjct: 101 VV-TSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKV 159 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +ET L + V++ NIA Q+ +K+++ EV + + + +G S + Sbjct: 160 TETKLGEDSLPFLDKYHYDDVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHV-AG 218 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 SGP FGG F G LD ++AL+ + + L EP ++ +SG+ Sbjct: 219 SGPLVGGNFGFGGGFNGNQGVLR----LDAKGISAFINALDNQSNGKVLPEPNISMLSGE 274 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +A GG+ + G+ ++ ++G+ L + RI L + VS Sbjct: 275 TADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNY 333 Query: 344 N---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 N G++P + RKA + E+ +G + ++ GL + + +PLL IPILG+ FR+ Sbjct: 334 NFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRS 393 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + R++ E+ I AT +VKPV +D+ PD Sbjct: 394 ATTERDKKELVIVATVNVVKPVNEKDVIYPD 424 >gi|320322730|gb|EFW78823.1| type II/III secretion system protein [Pseudomonas syringae pv. glycinea str. B076] gi|320330485|gb|EFW86464.1| type II/III secretion system protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 416 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 105/367 (28%), Positives = 162/367 (44%), Gaps = 51/367 (13%) Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE-RDIA 121 PV + + V DP ADV V+ L G G ++++ + + R A Sbjct: 56 PVAITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACATAPRQSMVFVRGRATA 115 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + T+ AD+ + ++ +D R +E+S T L Q+G + + S+ Sbjct: 116 SMVETVPAPSADAELPSQVQTDI--------------RFIEVSRTKLKQAGTSIFGKGSN 161 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKFVS 240 + G VT+ G+ SG S A+ V Sbjct: 162 NFLF------GAPGTVPGVTVTP----------------GTVSGALPSIPLAESAFNIVW 199 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 GG V G +L+ALE + TLA P+L A+SGQSASF +GG+ ++ Sbjct: 200 GGGSSKVLG---------ILNALENSGFAYTLARPSLVALSGQSASFLAGGEFPVPVPNT 250 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356 S+ ++GV L TPTV+ RI L++ EVSE I + +P R R+ Sbjct: 251 EGNGISIEYKEFGVRLTLTPTVVGRNRILLKVAPEVSELDFTSEISIAGTTVPIIRTRRT 310 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT++ L G + V++GL+ E P L IPILGA FR+S+ R+E E+ + TP Sbjct: 311 DTSIALADGESFVVSGLINTSNISTVEKFPGLGDIPILGAFFRSSKIQRDERELLMIVTP 370 Query: 417 FLVKPVA 423 LV+P+A Sbjct: 371 HLVQPLA 377 >gi|187926427|ref|YP_001892772.1| type II and III secretion system protein [Ralstonia pickettii 12J] gi|241665914|ref|YP_002984273.1| type II and III secretion system protein [Ralstonia pickettii 12D] gi|187728181|gb|ACD29345.1| type II and III secretion system protein [Ralstonia pickettii 12J] gi|240867941|gb|ACS65601.1| type II and III secretion system protein [Ralstonia pickettii 12D] Length = 454 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 129/257 (50%), Gaps = 30/257 (11%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFGGKFVSE- 241 +N+ G QV ++V E + +LK+ GF T + PS FG +S Sbjct: 163 MNVPGTVQVDVRVV--EFSKTVLKEAGFTFGRTRGGFDFRTFAPSSLSKVTFGSNGLSTE 220 Query: 242 -----GGDFSV------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G F++ KG+ S LE R LAEP+L A+SGQSA+F +G Sbjct: 221 STMPIGSAFNLLVSSVSKGLFADLSL------LESNGMARVLAEPSLVALSGQSANFLAG 274 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346 G+ + V + G T++ +G+ L +PT+LS RI L++ E S+ + +N Sbjct: 275 GE-IPIPVPQALGTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGA 333 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P+ R+ADTTVEL G + V+ GL+ + +P L +PI+G F+ +N+E Sbjct: 334 TVPAIVTRRADTTVELGDGESFVIGGLVSRSTLSNVDKVPFLGDVPIIGTFFKRLNYNQE 393 Query: 407 ETEIFIAATPFLVKPVA 423 E E+ I TP LVKP+A Sbjct: 394 ERELVIIVTPHLVKPMA 410 >gi|330963696|gb|EGH63956.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 174 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/162 (40%), Positives = 94/162 (58%), Gaps = 5/162 (3%) Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340 ASF +G + + V + + YGV L F+PT+L GRI L+++ EVS Sbjct: 1 ASFLAGSE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTST 59 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG LFR+ Sbjct: 60 LDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRS 119 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 RF R ETE+ I TP+LV+PV R ++ P D A A Sbjct: 120 KRFQRNETELVILITPYLVEPVKARVVATPLDKQRAASTASA 161 >gi|170720034|ref|YP_001747722.1| type II and III secretion system protein [Pseudomonas putida W619] gi|169758037|gb|ACA71353.1| type II and III secretion system protein [Pseudomonas putida W619] Length = 419 Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 18/246 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------ 242 QV + EVRR K+ G + +GS++ S G V+ G Sbjct: 136 QVQADIRFVEVRRTKYKEAGARLFFSGSNNSLIGS-PGTVPGTSVTPGAVPVTSPQIPLN 194 Query: 243 -GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G F++ F ++ALE + TLA P+LT +SG +ASF +GG+ S+ Sbjct: 195 NGVFNIVWGGGSSRFLAAINALENSGFAYTLARPSLTVLSGLTASFLAGGEIPIPVPSAG 254 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKAD 357 + S+ ++GV L TPTV+S RI L++ EVSE + + +P +R+ D Sbjct: 255 SDNFSIEYKEFGVRLALTPTVISRDRITLKVAPEVSELDYTNAVTIGGTSVPGLSIRRTD 314 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T++ L G + +++GL+ ++ + + +P L +PILGA FR S REETE+ + TP Sbjct: 315 TSISLADGESFIISGLVGNNTRSAVDKLPGLGNLPILGAFFRQSALVREETELLMIVTPH 374 Query: 418 LVKPVA 423 LV+P+A Sbjct: 375 LVQPLA 380 >gi|309778769|ref|ZP_07673542.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA] gi|308922477|gb|EFP68101.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA] Length = 454 Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 129/257 (50%), Gaps = 30/257 (11%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFGGKFVSE- 241 +N+ G QV ++V E + +LK+ GF T + PS FG +S Sbjct: 163 MNVPGTVQVDVRVV--EFSKTVLKEAGFTFGRTRGGFDFRTFAPSSLSKVTFGSNGLSTE 220 Query: 242 -----GGDFSV------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G F++ KG+ S LE R LAEP+L A+SGQSA+F +G Sbjct: 221 STMPIGSAFNLLVSSVSKGLFADLSL------LESNGMARVLAEPSLVALSGQSANFLAG 274 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346 G+ + V + G T++ +G+ L +PT+LS RI L++ E S+ + +N Sbjct: 275 GE-IPIPVPQALGTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGA 333 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P+ R+ADTTVEL G + V+ GL+ + +P L +P++G F+ +N+E Sbjct: 334 TVPAIVTRRADTTVELGDGESFVIGGLVSRSTLSNVDKVPFLGDVPVIGTFFKRLNYNQE 393 Query: 407 ETEIFIAATPFLVKPVA 423 E E+ I TP LVKP+A Sbjct: 394 ERELVIIVTPHLVKPMA 410 >gi|152989020|ref|YP_001350207.1| putative type II secretion system protein [Pseudomonas aeruginosa PA7] gi|150964178|gb|ABR86203.1| probable type II secretion system protein [Pseudomonas aeruginosa PA7] Length = 408 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 131/245 (53%), Gaps = 17/245 (6%) Query: 194 DQVTLKVTIAEVRRDILKQI-------GFQHSITGS--SSGPSKSFA--ADFGGKFVSEG 242 +QV + EV R LKQ G + G+ S G K A + GG F + Sbjct: 124 NQVQTDIRFVEVSRSKLKQASTSFVRRGGNLWVLGAPGSLGDIKVNADGSGLGGTFGAGA 183 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F++ + + + ++ALE + TLA P+L A+SGQSASF +GG+ + + Sbjct: 184 SGFNL--IFGGGKWLSFMNALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTN 241 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM--PSYRVRKADT 358 ++ ++G+ L TPTV++ RI L++ EVSE G+ +G + P+ RVR+ DT Sbjct: 242 DNVTIEYKEFGIRLTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDT 301 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +V L G + V++GL + + P L IPILGA FR+++ ++++ E+ + TP L Sbjct: 302 SVMLADGESFVISGLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHL 361 Query: 419 VKPVA 423 V+P+A Sbjct: 362 VQPLA 366 >gi|330811024|ref|YP_004355486.1| type II secretion system protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379132|gb|AEA70482.1| putative type II secretion system protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 407 Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 4/169 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +++ALE + TLA P+L A+SGQSASF +GG+ S+ + S+ ++G+ L Sbjct: 200 MINALEGSGFAYTLARPSLVALSGQSASFLAGGEVPIPVPSAGSDNVSIEYKEFGIRLTL 259 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE + + +P+ VR+ DT++ L G + V++GL+ Sbjct: 260 TPTVIGKNRIALKVAPEVSELDFTNAVNIAGTLVPALTVRRTDTSIALADGESFVISGLI 319 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 P L IPILGA FR++ NREE E+ + TP LV+P+A Sbjct: 320 STRNSSQVNKFPGLGDIPILGAFFRDNSINREERELLMIVTPHLVQPLA 368 >gi|107100112|ref|ZP_01364030.1| hypothetical protein PaerPA_01001133 [Pseudomonas aeruginosa PACS2] Length = 408 Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 107/180 (59%), Gaps = 5/180 (2%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + + ++ALE + TLA P+L A+SGQSASF +GG+ + + ++ ++G+ Sbjct: 195 WLSFMNALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIR 254 Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371 L TPTV++ RI L++ EVSE G+ +G + P+ RVR+ DT+V L G + V++ Sbjct: 255 LTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVIS 314 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL + + P L IPILGA FR+++ ++++ E+ + TP LV+P+A D PD Sbjct: 315 GLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAA-DAQLPD 373 >gi|149927033|ref|ZP_01915291.1| type II/III secretion system protein [Limnobacter sp. MED105] gi|149824254|gb|EDM83474.1| type II/III secretion system protein [Limnobacter sp. MED105] Length = 473 Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 125/409 (30%), Positives = 184/409 (44%), Gaps = 60/409 (14%) Query: 50 ISIGLNKVIILQ-VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG--------QANVI 100 +S G KVI L +P V + DPT A V V P GKN G + + Sbjct: 47 LSTGFQKVISLPGIPARVS---IGDPTIASVTVLKPTDRG--GKNAGVLVTGLKTGSTSL 101 Query: 101 LIGHDGKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 LI G M + + + A TL+ D N+ E + L G + Q+ Sbjct: 102 LIWDRGASMARVITVSVTGKAAETISTLK----DLNLETE--GQVLKLSGSTPNVSTYQQ 155 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----- 214 A E L + G ++ ++++ I V + V + E R L+++G Sbjct: 156 ARE----SLIKPG----SDGKPAELIDQATIQTSGTVQVDVKVVEFTRSELQRLGINLTG 207 Query: 215 ------FQHSITGSSS-----GPSKSFAADF-GGKFVSEG--GDFSVKGVLDR-FSFETV 259 F +SI G +S G S +F+ F G V E G + V R + Sbjct: 208 QVNGGGFTYSIAGPASVSGSGGVSNAFSLAFNGAGCVGEAVIGALNPTPVGPRTCDLVSG 267 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L+ L+ + LAEP+L A SGQ ASF +GG+ + V S G + +GV L FT Sbjct: 268 LNILQADGYAKVLAEPSLIAQSGQDASFLAGGE-IPIPVPSGNGTIGIEYKKFGVGLSFT 326 Query: 320 PTVLSPGRIGLRIQTEVSE-------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 PT+LS I LR+ EVS+ + GV +P+ R+A TTVEL + V+ G Sbjct: 327 PTILSNKTIALRVSPEVSDLDFSRGTSIQGV---LVPAILTRRASTTVELGENQSFVIGG 383 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L+ +I +P LS+IPILGA F+ + ++RE+ E+ I TP VKP Sbjct: 384 LISRNIIANANRVPWLSEIPILGAFFKGNTYSREDKELLIIVTPRFVKP 432 >gi|71735124|ref|YP_276550.1| type II/III secretion system protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555677|gb|AAZ34888.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 416 Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 106/366 (28%), Positives = 158/366 (43%), Gaps = 49/366 (13%) Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 PV + + V DP ADV V+ L G G + +++ ++ R A Sbjct: 56 PVAITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTS-LMVWTACATAPRQSMVFVRGRAT 114 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 M VE V + +Q R +E+S T L Q+G + + S+ Sbjct: 115 TSM------------VETVPAPSADAELPSQVQTDIRFIEVSRTKLKQAGTSIFGKGSNN 162 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKFVSE 241 + G VT+ G+ SG S A+ V Sbjct: 163 FLF------GAPGTVPGVTVTP----------------GTVSGALPSIPLAESAFNIVWG 200 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 GG V G+L +ALE + TLA P+L A+SGQSASF +GG+ ++ Sbjct: 201 GGSSKVLGIL---------NALENSGFAYTLARPSLVALSGQSASFLAGGEFPVPVPNTE 251 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKAD 357 S+ ++GV L TPTV+ RI L++ EVSE I + +P R R+ D Sbjct: 252 GNGISIEYKEFGVRLTLTPTVVGRNRILLKVAPEVSELDFTSEISIAGTTVPIIRTRRTD 311 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T++ L G + V++GL+ E P L IPILGA FR+S+ R+E E+ + TP Sbjct: 312 TSIALADGESFVVSGLINTSNISTVEKFPGLGDIPILGAFFRSSKIQRDERELLMIVTPH 371 Query: 418 LVKPVA 423 LV+P+A Sbjct: 372 LVQPLA 377 >gi|116052338|ref|YP_792649.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115587559|gb|ABJ13574.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 416 Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 107/180 (59%), Gaps = 5/180 (2%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + + ++ALE + TLA P+L A+SGQSASF +GG+ + + ++ ++G+ Sbjct: 203 WLSFMNALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIR 262 Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371 L TPTV++ RI L++ EVSE G+ +G + P+ RVR+ DT+V L G + V++ Sbjct: 263 LTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVIS 322 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL + + P L IPILGA FR+++ ++++ E+ + TP LV+P+A D PD Sbjct: 323 GLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAA-DAQLPD 381 >gi|313106823|ref|ZP_07793035.1| RcpA [Pseudomonas aeruginosa 39016] gi|310879537|gb|EFQ38131.1| RcpA [Pseudomonas aeruginosa 39016] Length = 416 Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 107/180 (59%), Gaps = 5/180 (2%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + + ++ALE + TLA P+L A+SGQSASF +GG+ + + ++ ++G+ Sbjct: 203 WLSFMNALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIR 262 Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371 L TPTV++ RI L++ EVSE G+ +G + P+ RVR+ DT+V L G + V++ Sbjct: 263 LTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVIS 322 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL + + P L IPILGA FR+++ ++++ E+ + TP LV+P+A D PD Sbjct: 323 GLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAA-DAQLPD 381 >gi|218893396|ref|YP_002442265.1| RcpA [Pseudomonas aeruginosa LESB58] gi|254239026|ref|ZP_04932349.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719] gi|296391003|ref|ZP_06880478.1| putative type II secretion system protein [Pseudomonas aeruginosa PAb1] gi|126170957|gb|EAZ56468.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719] gi|218773624|emb|CAW29438.1| RcpA [Pseudomonas aeruginosa LESB58] Length = 416 Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 107/180 (59%), Gaps = 5/180 (2%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + + ++ALE + TLA P+L A+SGQSASF +GG+ + + ++ ++G+ Sbjct: 203 WLSFMNALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIR 262 Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371 L TPTV++ RI L++ EVSE G+ +G + P+ RVR+ DT+V L G + V++ Sbjct: 263 LTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVIS 322 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL + + P L IPILGA FR+++ ++++ E+ + TP LV+P+A D PD Sbjct: 323 GLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAA-DAQLPD 381 >gi|15599500|ref|NP_252994.1| RcpA [Pseudomonas aeruginosa PAO1] gi|254244885|ref|ZP_04938207.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192] gi|9950526|gb|AAG07692.1|AE004846_9 RcpA [Pseudomonas aeruginosa PAO1] gi|126198263|gb|EAZ62326.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192] Length = 416 Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 107/180 (59%), Gaps = 5/180 (2%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + + ++ALE + TLA P+L A+SGQSASF +GG+ + + ++ ++G+ Sbjct: 203 WLSFMNALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIR 262 Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371 L TPTV++ RI L++ EVSE G+ +G + P+ RVR+ DT+V L G + V++ Sbjct: 263 LTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVIS 322 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL + + P L IPILGA FR+++ ++++ E+ + TP LV+P+A D PD Sbjct: 323 GLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAA-DAQLPD 381 >gi|83749638|ref|ZP_00946621.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551] gi|83723699|gb|EAP70894.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551] Length = 401 Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 84/308 (27%), Positives = 150/308 (48%), Gaps = 34/308 (11%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++++ + K ++Q+P V++ V +P ++ SP+T+YL G+ VG N+I+ G G Sbjct: 99 EVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVSPQTLYLLGQEVGTTNMIVQGRSGSC 158 Query: 109 MLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +D+ + D L+ TLR + + N++V +D++VL G V +Q+ ++++ F Sbjct: 159 SV-IDVSVGADPGGLQSTLRTLMPGAKNVQVSAAADSLVLGGSVSDSVQAQKVLDIANAF 217 Query: 168 LSQSGRNQY----------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 + R A S +++N++ + QV L+V +AEV Sbjct: 218 VMHQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPRSPRIINMMAVEAPQQVMLEVKVAEV 277 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + ++ Q+G ++ G+ S +F A F+S D + + L A + Sbjct: 278 SKTLIDQMGSALNVNGAFG--SWTFGAL--ANFLSGSNDIVNFSKNNHLPLKFALDAQKG 333 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTP 320 ++ LAEP+L AISGQ ASF +GG+ ++ VS V +GV L FTP Sbjct: 334 DGLVKVLAEPSLMAISGQEASFLAGGK-VFIPVSQGAATNGVANIILXEETFGVGLRFTP 392 Query: 321 TVLSPGRI 328 TV+ GRI Sbjct: 393 TVMEKGRI 400 >gi|238027562|ref|YP_002911793.1| type II and III secretion system protein [Burkholderia glumae BGR1] gi|237876756|gb|ACR29089.1| Type II and III secretion system protein [Burkholderia glumae BGR1] Length = 476 Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 95/168 (56%), Gaps = 5/168 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L LE+ R LA+PTL A+SGQSA+F +GG+ + V + G S+ YG+ L Sbjct: 271 LSILEQNNLARILAQPTLVALSGQSANFLAGGE-IPVPVPQALGTVSIEWKPYGIGLTVA 329 Query: 320 PTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PTVL P RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ Sbjct: 330 PTVLGPNRIALKVAPEASQLDFVNAITINGVTVPALTTRRADTTVELGDGESYVIGGLVD 389 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + +P L +PI+GA F++ + + + E+ I TP LV P+A Sbjct: 390 RETTSNLSKVPFLGDLPIIGAFFKSLSYQQNDKELVIIVTPHLVSPIA 437 >gi|257487974|ref|ZP_05642015.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 170 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 61/135 (45%), Positives = 84/135 (62%), Gaps = 4/135 (2%) Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGT 367 YGV L F+PT+L GRI L+++ EVS + VN +PS+RVR+ADT VE+ SG T Sbjct: 23 YGVSLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQT 82 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +AGL + + Q + +P+L +PILG LFR+ RF R ETE+ I TP+LV+PV R + Sbjct: 83 FAIAGLFQRESSQDMDKVPMLGDMPILGNLFRSKRFQRNETELVILITPYLVEPVKDRVV 142 Query: 428 SRPDDHYSVEDDAKA 442 + P D A A Sbjct: 143 ATPLDKQRAASTASA 157 >gi|325108834|ref|YP_004269902.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] gi|324969102|gb|ADY59880.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] Length = 736 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 104/425 (24%), Positives = 183/425 (43%), Gaps = 49/425 (11%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 +A ++++ VE +K+ + LN+ +++ V + ++DPT D+ + G Sbjct: 58 DARIVSMPQVE----RKLELVLNRSQLVKTRSRVTRMAIADPTVIDIAPFEEDEFAIIGT 113 Query: 93 NVGQANVILIGHDGKQML----------NLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142 +G + L + L N++ + D LE + +S + + + Sbjct: 114 AIGSTTLTLWFENDDNPLIYEVTVIDDPNVEEQLRIDYGKLERKIAILFPNSKVYLIPLH 173 Query: 143 DTVVLHGMVRTIQDSQRAVELSE-TFLSQSG-----------------------RNQYAN 178 + +V+ G + ++ R +++ FL G + Sbjct: 174 EKLVVKGQAKDAAEAARILQIVRGEFLDDYGGLYGPNGGAGRGGGGGGGYDDDGIRDEDD 233 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S ++N+L + GE QV L VTIAE+ R L+++G ++ ++ F G Sbjct: 234 LYSSFIVNMLQVPGEYQVMLHVTIAELNRSQLRRMGVDFAVLFAN-------GQHFIGST 286 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 +S GG ++ G+ + +++AL + L+ P+LT +SG A F +GG+ T Sbjct: 287 IS-GGVPTLTGIFNNGDISVLINALASNGTAKILSRPSLTTLSGHPAQFLAGGEFAVPTT 345 Query: 299 SSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 G TS +G + PTV+ LRI E S+ + G +P R+ Sbjct: 346 VGVGGVQGTSTQFRGFGTSMVVVPTVVDGDLFRLRIAPEFSQINQNNSVGGIPGLDSRRV 405 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL-FRNSRFNREETEIFIAAT 415 TTVEL G TIVL GLL IPLL +IP++G L F R +E E+ + T Sbjct: 406 QTTVELREGQTIVLGGLLSRQTASEVTRIPLLGEIPLIGPLMFNTKRATEDELELLVLVT 465 Query: 416 PFLVK 420 P +V+ Sbjct: 466 PEIVR 470 >gi|222111308|ref|YP_002553572.1| type II and iii secretion system protein [Acidovorax ebreus TPSY] gi|221730752|gb|ACM33572.1| type II and III secretion system protein [Acidovorax ebreus TPSY] Length = 356 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 107/344 (31%), Positives = 160/344 (46%), Gaps = 38/344 (11%) Query: 103 GHDGKQMLNLDILIERDI-AHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 +G Q +N ++ + D A M LR+ ++ D I V V D VVL GM QDS Sbjct: 4 ARNGTQ-INYEVTVSADHHAKTAMELRQLLSHDKGINVSAVGDKVVLDGMYAN-QDS--- 58 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-------VTLKVTIAEVRRDILKQI 213 + + Q + +V+NL+ EDQ V L V + EVR+ L I Sbjct: 59 ----------AAKIQKIVKAYPQVLNLVRERPEDQLVVPEQMVQLDVKVVEVRKQALDNI 108 Query: 214 GFQHSITG------SSSGPSKSFAADFGGKFVSEGGDFS--VKGVLDRFSFET----VLH 261 G + S G ++SG + +A+F G EG + + + T VL+ Sbjct: 109 GVKWSNLGVAGPTFATSGYFYANSANFRG-LNQEGYPITTPARPFISYLGLATQITSVLN 167 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 LE TLAEP ++++SG S+ GG+ + VSS G SV YGV+L F P Sbjct: 168 FLESNGDSWTLAEPRISSVSGGSSKVQVGGE-IPIPVSSGFGQLSVVYKPYGVILEFKPV 226 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + G + I EVS+P G ++ + +T V L T+V++GLLK + Sbjct: 227 IDKAGNVRSSIVAEVSQPDRSAGQGQFVAFTTNRTETEVSLKQNETLVISGLLKSVGARN 286 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 KEGIP++ + P+LG LF E+TE+ + TP + P A R Sbjct: 287 KEGIPVIGRAPVLGRLFSTQEMTNEQTEMLVVVTPRIHTPAADR 330 >gi|92113782|ref|YP_573710.1| type II and III secretion system protein [Chromohalobacter salexigens DSM 3043] gi|91796872|gb|ABE59011.1| type II and III secretion system protein [Chromohalobacter salexigens DSM 3043] Length = 483 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 125/255 (49%), Gaps = 24/255 (9%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGF---------------QHSITGSSSGPSKSFAADF-- 234 G QV + + EV R L+ GF G + SF+ F Sbjct: 187 GPVQVQTDIRVVEVNRSKLQSAGFFFGKNNGGNTLIGVGTSGALGGAEAVGDSFSEGFSF 246 Query: 235 --GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G F + G +++ S V+ AL TLAEP+L +SGQSASF +GG+ Sbjct: 247 LTGSGFQTGNGGYNIVVGNANDSVLGVISALRSNGFAYTLAEPSLVTLSGQSASFLAGGE 306 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDM-- 348 + VS+ G + ++GV L TPTVL I L++ EVSE GV A + Sbjct: 307 FPFP-VSNDDGDVRIDFKEFGVRLQLTPTVLDSNSIMLKVAPEVSELDFTQGVEASGVAV 365 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ VR+ DT+V+L G +++++GL+ + Q + P L +P++GA FR++RF + Sbjct: 366 PALNVRRTDTSVQLGDGESLIISGLVSNSTMQTVDKFPGLGDLPVIGAFFRSTRFETQNK 425 Query: 409 EIFIAATPFLVKPVA 423 E+ + TP LV P+A Sbjct: 426 ELVMIVTPHLVAPMA 440 >gi|299069498|emb|CBJ40767.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum CMR15] Length = 467 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 104/389 (26%), Positives = 177/389 (45%), Gaps = 61/389 (15%) Query: 66 VQDVLVSDPTKADVVV----HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 ++ + + +P AD ++ + ++ + K G AN IL+ G L ++ ++ + Sbjct: 65 LERIAIGNPEVADALLLKGHGAAGSLLIIAKKPGAAN-ILVWTQGGTALTYNVQVDAE-- 121 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA---VELSETFLSQSGRNQYAN 178 R ++ V+ T VL G V+ + RA ++ G N N Sbjct: 122 ------PRGAGSPDLAVQ--GSTAVLTGQVKDVYSLARARKSAAVAGGAEPPKGGNMIDN 173 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF--------------------QHS 218 ++ L + G QV ++V E + +LK+ GF Q++ Sbjct: 174 TT-------LAVPGTVQVDVRVV--EFSKTVLKEAGFIFTRTRGGFTFGSFSPSTLTQYT 224 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 +T +S + G F FS KG+ S +E R LAEP+L Sbjct: 225 VTPTSL--TTQSTTPIGTAFNLLISSFS-KGIFADLSL------IESNGLARVLAEPSLV 275 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A+SGQSA+F +GG+ + V + G T++ +G+ L +PT+LS RI L++ E S+ Sbjct: 276 ALSGQSANFLAGGE-IPIPVPQALGTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASD 334 Query: 339 ----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + +N +P+ R+ADTTVEL G + V+ GL+ + +P L +PI+ Sbjct: 335 LDFSRGVTLNGATVPAIVTRRADTTVELGDGESFVIGGLVSRTTLSNVDKVPFLGDVPII 394 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVA 423 G F+ +N+EE E+ I TP LV+P+A Sbjct: 395 GTFFKRLDYNQEERELVIIVTPRLVRPMA 423 >gi|294146464|ref|YP_003559130.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] gi|292676881|dbj|BAI98398.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] Length = 385 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 120/251 (47%), Gaps = 21/251 (8%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSEGGDF 245 AGE V + V A V LK +GF S I G+ PS +A F ++ Sbjct: 95 AGEQVVAVDVQFAAVSATTLKALGFNFSKLSGDIQGAIVSPSSLGSASFNPDGLALEASA 154 Query: 246 SVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-- 297 ++ + F VL AL + LA+PTL SG+ ASF +GG+ Sbjct: 155 PIQNAFNLFLSAPNRGIGAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEFPVPVPQ 214 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------MPSY 351 VS S S+ ++GV L TP VLS I L+I EVSE + N G +P Sbjct: 215 VSGSGNTLSIQYKEFGVRLSVTPFVLSKDHIVLKIAPEVSE--LDYNNGVQLQGYVVPGL 272 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R R A+TTVEL SG + V+AGL KE PL IP+LGA F+ + +E+ E+ Sbjct: 273 RRRSAETTVELGSGQSFVIAGLSYSSQTVTKEKTPLFGDIPVLGAFFKRQQNQKEKQELI 332 Query: 412 IAATPFLVKPV 422 I ATP LV P+ Sbjct: 333 IVATPRLVGPM 343 >gi|52425834|ref|YP_088971.1| GspD protein [Mannheimia succiniciproducens MBEL55E] gi|52307886|gb|AAU38386.1| GspD protein [Mannheimia succiniciproducens MBEL55E] Length = 458 Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 102/398 (25%), Positives = 182/398 (45%), Gaps = 40/398 (10%) Query: 53 GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM--- 109 G +K I L +D + VS AD + + ++GK G +V +G + Sbjct: 26 GTSKYIELDKKIDT--IFVSSSEVADYEIVDDYSFMVYGKQEGTTDVTAFDANGNILYTD 83 Query: 110 -LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR--------- 159 LN++ LI +I ++ +SN++V+ + V+ G T +S+ Sbjct: 84 TLNVNALI-NNIVDTNKQIKARFPNSNLQVKKLGKAYVIEGKANTQHESEEVNRIVGEAI 142 Query: 160 --AVELSETFLSQSG---------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 A +++ET L + ++Y + V+N NI Q+ +K+T+AEV ++ Sbjct: 143 GVAPKVTETTLKRGNGMSDEKIPFLDKYEYNG---VINNTNIDKTKQINVKLTVAEVNKN 199 Query: 209 ILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 +G ++H ++GS S A + G F G ++ ++ + A+ A Sbjct: 200 FSDSLGIKWEH-LSGSVLENWTSGANGYSGGFDGTTGSIAL---INANRLSAFITAVNNA 255 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP ++ +SG++A GG+ + S G TS+ D+GV L V Sbjct: 256 NNGKILAEPNISMLSGETADILVGGEVPFAQ-RDSDGNTSIIYKDFGVKLMVGAKVQKND 314 Query: 327 RIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 ++ + + EVS + GD+P ++ R+A +T E+ +G + ++ GLL + Sbjct: 315 QVRIVLAQEVSTLAGNYTYTSVGDIPYFQTRRAKSTFEVGNGESFIIGGLLSSSDLEGVS 374 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +PL IPILGA FR+ +RE E+ + AT LV P Sbjct: 375 KVPLFGDIPILGAFFRSVTTSRETKELVVVATVNLVTP 412 >gi|298488959|ref|ZP_07006982.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156457|gb|EFH97554.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 416 Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L+A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I + ++P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 P L IPILGA FRNS+ R+E E+ + TP LV+P+A Sbjct: 329 SSSNVGSVSKFPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLA 377 >gi|331092898|ref|ZP_04586842.2| type II and III secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021233|gb|EGI01290.1| type II and III secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 416 Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 99/170 (58%), Gaps = 4/170 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L+A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I ++ +P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITISGTTVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + P L IPILGA FR+S+ R+E E+ + TP LV+P+A+ Sbjct: 329 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAV 378 >gi|269960458|ref|ZP_06174830.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834535|gb|EEZ88622.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 226 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 101/186 (54%), Gaps = 12/186 (6%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP+LTA+SG A F +GG+ V + G T + +YGV L F P +LS RI L+ Sbjct: 2 LAEPSLTALSGTQAEFVAGGEFPIP-VPNDDGIT-IDYKEYGVQLDFVPYILSDKRINLK 59 Query: 332 IQTEVSE----PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + VSE V+ N + +P R A TT+EL G TI +AGLL ++ + + Sbjct: 60 MNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLSENARNV 119 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D + +D + Sbjct: 120 ADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGFVSPNDVE 179 Query: 442 AFFFNR 447 + + Sbjct: 180 FYLLGK 185 >gi|260914312|ref|ZP_05920781.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella dagmatis ATCC 43325] gi|260631413|gb|EEX49595.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella dagmatis ATCC 43325] Length = 465 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 95/400 (23%), Positives = 181/400 (45%), Gaps = 41/400 (10%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM----LNLDI 114 ++Q + + VS P AD + + ++ K G+A + +GK + +N+D Sbjct: 42 LIQTKEKIDTIFVSSPAIADYEILDDNSFIIYAKEQGRAEISAFDANGKTLTNDVVNVDS 101 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR- 173 L I+ ++ ++N+ V+ V V+ G R+ ++S + L + Sbjct: 102 LF-TGISDTNQQIKARFPNTNLSVKKVGKAYVIEGKARSQEESDEVHRIVGEALGNGKKV 160 Query: 174 --NQYANSSSKK------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS- 218 ++ S++ V+N +N+ Q+ +K+T+ EV + + + +G S Sbjct: 161 TETKFKAGESEESLPFLDKYQFDGVVNNVNVDETTQINVKLTVVEVNKKLSEAVGINWSR 220 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPT 276 ++G D G G ++G+L D ++AL+ R LAEP Sbjct: 221 LSGG--------VPDLLGGVSRVTGFDGIQGLLKIDASGVSAFINALDNQNNGRILAEPN 272 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ++ +SG++A GG+ + GA ++ D+G+ L + RI L + V Sbjct: 273 ISMLSGETADILVGGEIPFAQ-RDKEGAPTIIYKDFGIRLAVAAKLQKNNRIRLALDQRV 331 Query: 337 SEPVIGVN-----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSK 390 S I N G++P + R++ + E+ G + ++ GL D++ + + +P+L Sbjct: 332 S--TIAGNYSFESVGEIPFFNTRRSKSVFEVADGESFIIGGLFNSSDLEGINK-VPVLGD 388 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IPILGA FRN++ +RE+ E+ I AT VKPV ++ P Sbjct: 389 IPILGAFFRNAKTDREDRELVIVATVNTVKPVQEDEIVYP 428 >gi|330887974|gb|EGH20635.1| type II and III secretion system protein [Pseudomonas syringae pv. mori str. 301020] Length = 416 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L+A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I + ++P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 P L IPILGA FRNS+ R+E E+ + TP LV+P+A Sbjct: 329 SSSNVGSVGKFPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLA 377 >gi|300697742|ref|YP_003748403.1| pilus assembly protein (cpaC) [Ralstonia solanacearum CFBP2957] gi|299074466|emb|CBJ54016.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum CFBP2957] Length = 462 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 5/168 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L +E R LAEP+L A+SGQSA+F +GG+ + V + G T++ +G+ L + Sbjct: 252 LSLIESNGLARVLAEPSLVALSGQSANFLAGGE-IPIPVPQALGTTTIEYKPFGIGLTVS 310 Query: 320 PTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PT+LS RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ Sbjct: 311 PTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFVIGGLVS 370 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + +P L +PI+G+ F+ +N+EE E+ I TP LV+P+A Sbjct: 371 RTTLSNVDKVPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMA 418 >gi|330989176|gb|EGH87279.1| type II and III secretion system protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 416 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L+A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I + ++P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 P L IPILGA FRNS+ R+E E+ + TP LV+P+A Sbjct: 329 SSSNVGSVGKFPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLA 377 >gi|289625312|ref|ZP_06458266.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647837|ref|ZP_06479180.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330867146|gb|EGH01855.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871034|gb|EGH05743.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 416 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L+A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I + ++P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 P L IPILGA FRNS+ R+E E+ + TP LV+P+A Sbjct: 329 SSSNVGSVGKFPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLA 377 >gi|320101627|ref|YP_004177218.1| type II and III secretion system protein [Isosphaera pallida ATCC 43644] gi|319748909|gb|ADV60669.1| type II and III secretion system protein [Isosphaera pallida ATCC 43644] Length = 712 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/331 (26%), Positives = 139/331 (41%), Gaps = 58/331 (17%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ------HSITGSSSGP-------- 226 S +++N L + G Q+ LKV +AE+ R +++IG +S+ GS G Sbjct: 347 SPQIINRLRVPGPRQILLKVKLAELNRTAIREIGANWLRGRNNSLIGSQIGGIAGFTTET 406 Query: 227 ----SKSFAADFGGKFVSEGGD-----------------------------FSVKGVLDR 253 + +FAA G+ GG + G+ Sbjct: 407 NTQMTAAFAAPSFGRPGIAGGQPIPGSVTGSLIQGIDTLLNATAGSALQPSAQLFGIFRA 466 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSV 307 F+ L+AL LAEP LTA+ GQ A +GG+ L ++ Sbjct: 467 GEFDLFLNALRTNNLATILAEPNLTALDGQPARVIAGGEIPFPVPQLGAGGGGGGAVITI 526 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELP 363 +G +L F P +L I L ++ S P G +N +P + R A T V+L Sbjct: 527 QFRPFGAILTFLPQILEDDLIRLDVEPVFSTPNQGLGTSINGTAVPGFNTRSARTVVQLR 586 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G T+ +AGL++ + Q IPLL PI+G LF +RF ETE+ + TP+L+ P+ Sbjct: 587 EGETLAIAGLIQKNNQAATNRIPLLGDAPIVGPLFSRNRFETLETELIVIVTPYLIAPMG 646 Query: 424 MRDLSR-PDDHYSVEDDAKAFFFNRVNKIYG 453 ++ + P D+ +D + F R G Sbjct: 647 EGEVPKVPTDYVDEPNDIEFFILGRTEGKTG 677 >gi|300694111|ref|YP_003750084.1| pilus assembly protein (cpac) [Ralstonia solanacearum PSI07] gi|299076148|emb|CBJ35461.2| putative pilus assembly protein (cpaC) [Ralstonia solanacearum PSI07] Length = 462 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 6/171 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L +E R LAEP+L A+SGQSA+F +GG+ + V + G T++ +G+ L + Sbjct: 252 LSLIESNGLARVLAEPSLVALSGQSANFLAGGE-IPIPVPQALGTTTIEYKPFGIGLTVS 310 Query: 320 PTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PT+LS RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ Sbjct: 311 PTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFVIGGLVS 370 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + +P L +P++G+ F+ +N+EE E+ I TP LV+P+A RD Sbjct: 371 RTTLSNVDKVPFLGDVPVIGSFFKRLDYNQEERELVIIVTPHLVRPMA-RD 420 >gi|54302288|ref|YP_132281.1| putative pilus assembly transmembrane protein [Photobacterium profundum SS9] gi|46915710|emb|CAG22481.1| putative pilus assembly transmembrane protein [Photobacterium profundum SS9] Length = 217 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 101/184 (54%), Gaps = 14/184 (7%) Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 AISG+ A F SGG+ + ++ ++GV L F PTV+S I L + EVSE Sbjct: 2 AISGEEAEFISGGEFPIPVPNDEN--ITIEFKEFGVALKFIPTVMSADSINLALNIEVSE 59 Query: 339 PVIGVNAGDM-----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + NA + PS R A TTVEL +G TI +AGLL ++I + E +P Sbjct: 60 -ISNQNAVSIRPSGTNTQFFVPSLSKRGAKTTVELGNGQTIGIAGLLNENITDVVEKLPG 118 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L +PI+G LFR+ F + ETE+ I TP L KPV +D++ P D++ +D + + R Sbjct: 119 LGDLPIIGQLFRSQSFRKGETELVILVTPRLAKPVRKQDITLPTDNFVEPNDWEYYLLGR 178 Query: 448 VNKI 451 ++++ Sbjct: 179 MSEL 182 >gi|160897515|ref|YP_001563097.1| type II and III secretion system protein [Delftia acidovorans SPH-1] gi|160363099|gb|ABX34712.1| type II and III secretion system protein [Delftia acidovorans SPH-1] Length = 492 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/187 (36%), Positives = 103/187 (55%), Gaps = 15/187 (8%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G FS G++ + S LE R LA PTL A +GQ+ASF +GG+ L V + Sbjct: 272 GKAFSGAGIVTQLSI------LEGNGMARVLARPTLLAQTGQNASFLAGGE-LPIPVPAR 324 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRK 355 G ++ ++G+ L TPT+LS RI L++ E S+ + N+G +P+ R R+ Sbjct: 325 DGNIAIQYKEFGIKLQLTPTILSDDRIALKVSPEASD--LDFNSGVTISGVTVPAIRTRR 382 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ADT+VEL G + V+ GL+ +P+L +PILG F+N + +EE+E+ I T Sbjct: 383 ADTSVELADGESFVIGGLVSRATTSNVSKVPVLGDLPILGTFFKNLNYTQEESELVIIVT 442 Query: 416 PFLVKPV 422 P LV P+ Sbjct: 443 PRLVHPL 449 >gi|221066739|ref|ZP_03542844.1| type II and III secretion system protein [Comamonas testosteroni KF-1] gi|220711762|gb|EED67130.1| type II and III secretion system protein [Comamonas testosteroni KF-1] Length = 467 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 111/223 (49%), Gaps = 34/223 (15%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 FS G+ + F LE R LA+PTL A +GQSASF +GG+ S+S+ Sbjct: 249 FSGAGISAQLGF------LEGNGLARVLAKPTLVAHTGQSASFLAGGEIPIPVPSTSSNN 302 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PVIGVNAGDMPSYRVRKAD 357 S+ ++GV L TPTVLS RI L++ E S+ + GV +P+ R+AD Sbjct: 303 ISIRYKEFGVKLQLTPTVLSNERIALKVAPEASDLDYTSGVTIAGV---AVPAIATRRAD 359 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T VEL G + V+ GL+ +PLL +PILG F+N ++++E E+ I TP Sbjct: 360 TMVELADGESFVIGGLVSRSTSSSVNKVPLLGDLPILGPFFKNLNYSQDEKELVIIVTPR 419 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFN------RVNKIYGP 454 LV+P+ V+ D +A N+++GP Sbjct: 420 LVQPLP------------VQTDLEALLPGGRSEQRNANQVWGP 450 >gi|330959995|gb|EGH60255.1| type II and III secretion system protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 416 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L+A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I + +P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + P L IPILGA FR+S+ R+E E+ + TP LV+P+A Sbjct: 329 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 377 >gi|83747917|ref|ZP_00944949.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551] gi|207739458|ref|YP_002257851.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum IPO1609] gi|83725450|gb|EAP72596.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551] gi|206592834|emb|CAQ59740.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum IPO1609] Length = 462 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 5/168 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L +E R LAEP+L A+SGQSA+F +GG+ + V + G T++ +G+ L + Sbjct: 252 LSLIESNGLARVLAEPSLVALSGQSANFLAGGE-IPIPVPQALGTTTIEYKPFGIGLTVS 310 Query: 320 PTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PT+LS RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ Sbjct: 311 PTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFVIGGLVS 370 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + +P L +PI+G+ F+ +N+EE E+ I TP LV+P+A Sbjct: 371 RTTLSNVDKLPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMA 418 >gi|207724789|ref|YP_002255186.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum MolK2] gi|206590014|emb|CAQ36975.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum MolK2] Length = 447 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 5/168 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L +E R LAEP+L A+SGQSA+F +GG+ + V + G T++ +G+ L + Sbjct: 237 LSLIESNGLARVLAEPSLVALSGQSANFLAGGE-IPIPVPQALGTTTIEYKPFGIGLTVS 295 Query: 320 PTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PT+LS RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ Sbjct: 296 PTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFVIGGLVS 355 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + +P L +PI+G+ F+ +N+EE E+ I TP LV+P+A Sbjct: 356 RTTLSNVDKLPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMA 403 >gi|33152386|ref|NP_873739.1| rough colony protein A [Haemophilus ducreyi 35000HP] gi|21326707|gb|AAL92467.1| RcpA [Haemophilus ducreyi] gi|33148609|gb|AAP96128.1| rough colony protein A [Haemophilus ducreyi 35000HP] Length = 456 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 194/398 (48%), Gaps = 32/398 (8%) Query: 53 GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM--- 109 G K+I + +D + VS P AD + + L+ K G+ +++ +G + Sbjct: 34 GQTKLIKTKTKIDT--IFVSSPEVADYQILDDNSFMLYAKGEGKTEIVVFDFEGNALTED 91 Query: 110 -LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 ++++ +I +I+ ++ +SN+ V+ + V+ G + +++ + + L Sbjct: 92 VVSVNNMI-NNISETNQQIQTRFPNSNLTVKKIGKAYVVEGKAKNEAETEDVIRVVGEAL 150 Query: 169 SQSGRNQYA------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 +G+N + N + ++N + Q+ +K+T+AEV + +IG Sbjct: 151 G-AGKNVTSKNLAGEQVPFLNNYQYEGIINNTTASDATQINVKLTVAEVNKKFSDEIGIH 209 Query: 217 HS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 S ++G+ + A G F EGG ++ +++ + + ++ AL+ + + LAEP Sbjct: 210 WSNLSGNFFKNLTNLAIQ--GGFGPEGGKLAL---VNQDNLQMLVTALDNQSNGKILAEP 264 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ++ +SG++A GG+ + G+ +V ++G+ L + RI L + E Sbjct: 265 NISMLSGETADILVGGE--VPIIERKDGSPTVKYKEFGIKLAVGAKLQKNDRIRLALSQE 322 Query: 336 VSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEGIPLLSKIP 392 VS ++ +P + R++ +T E+ +G + +++GLL K+DI+ + + +P L IP Sbjct: 323 VSTIAGSFKLDQDSLPIFNTRRSKSTFEVGNGESFIVSGLLNKEDIESITK-VPGLGDIP 381 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 ILGA FR++ +R E+ + AT LVKPV ++ P Sbjct: 382 ILGAFFRSANTSRGSKELVVIATVNLVKPVDGSEILYP 419 >gi|17549308|ref|NP_522648.1| outer membrane channel signal peptide protein [Ralstonia solanacearum GMI1000] gi|17431560|emb|CAD18238.1| probable pilus assembly, secretin cpac signal peptide protein [Ralstonia solanacearum GMI1000] Length = 454 Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 5/168 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L +E R LAEP+L A+SGQSA+F +GG+ + V + G T++ +G+ L + Sbjct: 244 LSLIESNGLARVLAEPSLVALSGQSANFLAGGE-IPIPVPQALGTTTIEYKPFGIGLTVS 302 Query: 320 PTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PT+LS RI L++ E S+ + +N +P+ R+ADTTVEL G + V+ GL+ Sbjct: 303 PTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADTTVELGDGESFVIGGLVS 362 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + +P L +PI+G F+ +N+EE E+ I TP LV+P+A Sbjct: 363 RTTLSNVDKVPFLGDVPIIGTFFKRLNYNQEERELVIIVTPRLVRPMA 410 >gi|115379230|ref|ZP_01466346.1| type II and III secretion system protein [Stigmatella aurantiaca DW4/3-1] gi|310822227|ref|YP_003954585.1| type II and III secretion system [Stigmatella aurantiaca DW4/3-1] gi|115363762|gb|EAU62881.1| type II and III secretion system protein [Stigmatella aurantiaca DW4/3-1] gi|309395299|gb|ADO72758.1| Type II and III secretion system [Stigmatella aurantiaca DW4/3-1] Length = 485 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 110/434 (25%), Positives = 185/434 (42%), Gaps = 67/434 (15%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G I++G+ ++ VP + + + DP A+V + + G+ G+ +I+ G Sbjct: 31 GSTIALGVGTQKVITVP-GIARIALGDPNVAEVKNIGNNQVLIIGQTEGKTTLIIWKSSG 89 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQR------ 159 +++ L + +D + +++ + + + V MV D + L G T QD+ R Sbjct: 90 QRVTFLIAVRRQDPNEIISEIKKLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVS 149 Query: 160 -------------------AVELSETFLSQSGRNQYAN---------------------- 178 A L+ + RN AN Sbjct: 150 LYPNVKSFVKIAPNAKKLVAQNLNAAYQKAGLRNVQANVVGSTIFLEGSVESQQDLQKAE 209 Query: 179 ----SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAA 232 + +KV NLL + + + +V E+RR+ + G ++ I+GS++ + Sbjct: 210 LITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYPTDISGSATASALISKE 269 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 F G F S G S++ L F A + R LA+P L SG+ A F +GGQ Sbjct: 270 LFPGTFSS--GVSSLQ-FLASADFAVGFQANDGYG--RLLAQPKLVCASGEKAEFLAGGQ 324 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGD--- 347 ++++ +V YGV+L+ PT G I I+ E SE + V+ G Sbjct: 325 VPIPLITNNQ--FTVEYKPYGVILNLRPTADRSGNIQTEIEAEASEIDTSVAVSIGGSAA 382 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P +R RK T V + G TIVL+G+ D Q+ +P L IPI+G LF+N F+ + Sbjct: 383 VPGFRTRKVKTNVTVRHGETIVLSGVFSHDEQKAVSKLPGLGHIPIIGELFKNRAFDSTK 442 Query: 408 TEIFIAATPFLVKP 421 E+ I TP +V P Sbjct: 443 RELVIFVTPRIVNP 456 >gi|330969406|gb|EGH69472.1| type II and III secretion system protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 325 Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +++A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 118 MINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 177 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I + +P+ +R+ DT++ L G + V++GL+ Sbjct: 178 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVISGLI 237 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + P L IPILGA FR+S+ R+E E+ + TP LV+P+A Sbjct: 238 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 286 >gi|330938340|gb|EGH41971.1| type II and III secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 247 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +++A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 40 MINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 99 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I + +P+ +R+ DT++ L G + V++GL+ Sbjct: 100 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 159 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + P L IPILGA FR+S+ R+E E+ + TP LV+P+A Sbjct: 160 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 208 >gi|171921001|gb|ACB59184.1| RcpA [Actinobacillus suis ATCC 33415] Length = 460 Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 102/390 (26%), Positives = 182/390 (46%), Gaps = 39/390 (10%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDI 114 +++ + V VS P AD + T L+ K G+A ++ DG + +N++ Sbjct: 39 LIKTDAKIDTVFVSSPDIADYEILDDNTFMLYAKAEGRAEIVAFDVDGTPLTEDFINVNN 98 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR--------------- 159 I A E RF +SN+ V+ + V+ G + +S+ Sbjct: 99 AINNIAATNEQIQTRF-PNSNLSVKKIGKAYVIEGKAKNAAESEEINRIVGESLGAGKKV 157 Query: 160 ---AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 VE SE + + QY + ++N N Q+ +K+T+AEV + +IG Sbjct: 158 VEAKVEGSEDAIPFLDKYQY-----EGIINNANEEDATQINVKLTVAEVNKTFSDEIGIN 212 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 + + + AA GG F GG ++ ++ + +L AL+ + LAEP Sbjct: 213 WNNLSGNFFRNLGSAAINGG-FGKSGGQLAL---VNSNNLNVLLSALDNQNNGKILAEPN 268 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ++ +SG++A GG+ + + G +V ++G+ L V RI L + V Sbjct: 269 ISMLSGETADILVGGEVPF-VQRNRDGELNVLYKEFGIKLAVGAKVQKSDRIRLLLSQSV 327 Query: 337 SEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEGIPLLSKIP 392 S + G ++ +P + R++ +T E+ +G + +++GLL K DI+ +K+ +P L +P Sbjct: 328 S-TIAGNYEIDDNHIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK-VPFLGDVP 385 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPV 422 ILGA FR++ +RE E+ + AT LVKPV Sbjct: 386 ILGAFFRSANSSRESKELVVVATVNLVKPV 415 >gi|213968016|ref|ZP_03396162.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato T1] gi|301383668|ref|ZP_07232086.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato Max13] gi|302059963|ref|ZP_07251504.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato K40] gi|302131629|ref|ZP_07257619.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927359|gb|EEB60908.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato T1] Length = 419 Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 97/170 (57%), Gaps = 4/170 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L+A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 212 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 271 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPT++ RI L++ EVSE I + +P+ +R+ DT++ L G + V++GL+ Sbjct: 272 TPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 331 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + P L IPILGA FR+S+ R E E+ + TP LV+P+A+ Sbjct: 332 SSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAV 381 >gi|28871966|ref|NP_794585.1| type II/III secretion system protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28855219|gb|AAO58280.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331014708|gb|EGH94764.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 419 Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 97/170 (57%), Gaps = 4/170 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L+A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 212 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 271 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPT++ RI L++ EVSE I + +P+ +R+ DT++ L G + V++GL+ Sbjct: 272 TPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 331 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + P L IPILGA FR+S+ R E E+ + TP LV+P+A+ Sbjct: 332 SSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAV 381 >gi|257483347|ref|ZP_05637388.1| type II and III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012566|gb|EGH92622.1| type II and III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 416 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 96/169 (56%), Gaps = 4/169 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L+A+E + LA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MLNAMENSGYAYILARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I + ++P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 P L IPILGA FRNS+ R+E E+ + TP LV+P+A Sbjct: 329 SSSNVGSVGKFPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLA 377 >gi|330953053|gb|EGH53313.1| type II and III secretion system protein [Pseudomonas syringae Cit 7] Length = 416 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +++A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I + +P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + P L IPILGA FR+S+ R+E E+ + TP LV+P+A Sbjct: 329 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 377 >gi|302185189|ref|ZP_07261862.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae 642] Length = 416 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +++A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I + +P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + P L IPILGA FR+S+ R+E E+ + TP LV+P+A Sbjct: 329 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 377 >gi|330976799|gb|EGH76834.1| type II and III secretion system protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 416 Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +++A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I + +P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + P L IPILGA FR+S+ R+E E+ + TP LV+P+A Sbjct: 329 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 377 >gi|215433395|gb|ACJ66663.1| outer bacterial membrane secretin family protein [Myxococcus fulvus HW-1] Length = 482 Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 108/435 (24%), Positives = 186/435 (42%), Gaps = 69/435 (15%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +S+G+ ++ +P + V + DP+ ADV + + G+ G+ +++ G Sbjct: 28 GTNVSLGVGSQKVITIP-GLSRVALGDPSIADVKTLGSGQLLITGQAEGKTTLLVWKSSG 86 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQR------ 159 +++ L + ++D + ++R + + + V MV D + L G T QD+ R Sbjct: 87 QRVSYLVAVRKQDPNEVITEIKRLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVG 146 Query: 160 -------------------AVELSETFLSQSGRNQYAN---------------------- 178 A L+ F +N AN Sbjct: 147 LYPNVKSFVKIAPNAKKLVAQNLNAAFQKAGLKNVQANVVGATIFLEGSVESQQDLQKAE 206 Query: 179 ----SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAA 232 + +KV NLL + + + +V E+RR+ + G ++ ITG++S + Sbjct: 207 LITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYPTDITGTASAIANISQE 266 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPTLTAISGQSASFTSGG 291 F G F S ++ D FSF + R LA+P L SG+ A F +GG Sbjct: 267 LFPGTFGSGVSTLALNANSD-FSF-----GFQGNDGYGRLLAQPKLVCASGEKAEFLAGG 320 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAG--- 346 + ++++ +V YGV+L+ PT G I I+ E SE + V+ G Sbjct: 321 EVPIPLITNNQ--FTVEFKKYGVILNLRPTADRNGNIQTEIEAEASEIDTSVAVSFGGSS 378 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P +R R+ T V + G TIVL+G+ D Q+ +P L IPI+G LF++ F+ Sbjct: 379 SIPGFRTRRVKTNVTVRHGETIVLSGVFSHDEQKSVSKLPGLGHIPIVGELFKSRGFDST 438 Query: 407 ETEIFIAATPFLVKP 421 + E+ I TP +V P Sbjct: 439 KRELVIFVTPRIVNP 453 >gi|330963438|gb|EGH63698.1| type II/III secretion system protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 416 Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 97/170 (57%), Gaps = 4/170 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L+A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPT++ RI L++ EVSE I + +P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + P L IPILGA FR+S+ R E E+ + TP LV+P+A+ Sbjct: 329 SSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAV 378 >gi|330873641|gb|EGH07790.1| type II/III secretion system protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 416 Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 97/170 (57%), Gaps = 4/170 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +L+A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPT++ RI L++ EVSE I + +P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + P L IPILGA FR+S+ R E E+ + TP LV+P+A+ Sbjct: 329 SSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAV 378 >gi|330895618|gb|EGH27925.1| type II and III secretion system protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 416 Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +++A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I + +P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + P L IPILGA FR+S+ R+E E+ + TP LV+P+A Sbjct: 329 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 377 >gi|66047618|ref|YP_237459.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63258325|gb|AAY39421.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 416 Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 +++A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 209 MINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268 Query: 319 TPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPTV+ RI L++ EVSE I + +P+ +R+ DT++ L G + V++GL+ Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLI 328 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + P L IPILGA FR+S+ R+E E+ + TP LV+P+A Sbjct: 329 SSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLA 377 >gi|261856884|ref|YP_003264167.1| type II and III secretion system protein [Halothiobacillus neapolitanus c2] gi|261837353|gb|ACX97120.1| type II and III secretion system protein [Halothiobacillus neapolitanus c2] Length = 443 Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 109/390 (27%), Positives = 168/390 (43%), Gaps = 38/390 (9%) Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDI 114 + ++ P + V V + +V V R M + G ++ L DG ++ ++L I Sbjct: 43 QALVRSAPGSLLRVAVGNGKLVEVRVLGRRQMVIIANQAGDTSLQLWMRDGSRRSIDLHI 102 Query: 115 LIER--DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 + +A L TL + A + V V VVL G+ T +D + + + + Sbjct: 103 VSGNTDQVAELVRTLLK--ASKAVSVNTVGGNVVLSGVNLTQEDVAQIAAIKKVYPQVLD 160 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 Q AN+ K M V +KV I E + L QIG + GP + A Sbjct: 161 FTQ-ANAVQMKPM----------VMMKVRIMEFDKSALHQIGIKWD--SVIDGPGGALAH 207 Query: 233 DFGGKFV------SEGG---------DFSVKGVLDRF----SFETVLHALERATAIRTLA 273 DF + S GG S+ G F S + ++ + + LA Sbjct: 208 DFASNSLYRMTPSSFGGIGANGAVNLPLSLSGTPAFFGLVTSITSKINLMMQTGNAWELA 267 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 P L A SG +A F GG+ + ++ G TSV YG+ LH P V S G I I+ Sbjct: 268 TPQLAARSGGTADFLVGGE-VPIPIAQGLGQTSVEYKPYGIKLHIEPVVSSTGDISTTIK 326 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 E+S V P + RKA T V + G TIV++GL+ + + +P L +IP+ Sbjct: 327 AEISHIDPSVTVQGYPGFLTRKASTEVNVHEGQTIVISGLVDSSASKTIDKVPGLGQIPV 386 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVA 423 LG LFR+ F + +++ I TP+LV P A Sbjct: 387 LGELFRSRDFKSKRSDLVIFVTPYLVTPDA 416 >gi|218509314|ref|ZP_03507192.1| pilus assembly secretion protein [Rhizobium etli Brasil 5] Length = 177 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 52/117 (44%), Positives = 76/117 (64%), Gaps = 3/117 (2%) Query: 22 SVAKLPPIKEANA---AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 S L + EA+A +I I+ +++ +GLNK +++ +P D D+LVSDP+ AD Sbjct: 29 SFGPLLAVDEAHADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAHDILVSDPSMAD 88 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE LRRFI DSN Sbjct: 89 AVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANLRRFIPDSN 145 >gi|127511579|ref|YP_001092776.1| type II and III secretion system protein [Shewanella loihica PV-4] gi|126636874|gb|ABO22517.1| type II and III secretion system protein [Shewanella loihica PV-4] Length = 436 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 98/384 (25%), Positives = 174/384 (45%), Gaps = 45/384 (11%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHL 123 +V+ ++V + V + + L G+ G ++ L DGK + L+L + + + Sbjct: 42 NVERIVVGNGKVLSAKVVDNKGVLLIGEAPGNTDLQLWQKDGKLIKLSLTVTPDNSLRTT 101 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ--RAVELSETFLSQSGRNQYANSSS 181 M + A ++ V +++ G Q Q + +E +S ++A + S Sbjct: 102 TMVKKMLAAFPSLTVSESDGLIIVQGEADLAQKEQLEKILEGDPNVVSLVKYLKFAKTMS 161 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAAD--FGGK 237 V ++V I E + L +G ++ S+ G + G +K F A+ F Sbjct: 162 P------------MVKMQVKIVEFNKSTLNNVGIKWETSMAGPAYGVAKGFTANPIFN-- 207 Query: 238 FVSEGGDFSVK---------GVLDRFSFETV---------LHALERATAIRTLAEPTLTA 279 V+ G ++ GVLD + ++ + L R LA+P LT Sbjct: 208 -VASPGQYTEAITKSITENIGVLDTRGWSSLGIVSGIGSQIQLLSEKGDARLLAQPNLTT 266 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-- 337 SG+SASF +GG+ ++VS GA V +YG+ L P V I R+ EVS Sbjct: 267 RSGESASFLAGGEFPIRSVSG-LGAVDVEYKEYGIKLDIEPVVDEQQNIVSRVMAEVSSI 325 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 +P + V+ +P R+ ++ + + + TIV++GL+ ++ ++ PLL IPILG L Sbjct: 326 DPSVAVDG--VPGMLTRRTESVINVKNNETIVISGLVNSEMSKIVNKFPLLGDIPILGEL 383 Query: 398 FRNSRFNREETEIFIAATPFLVKP 421 F++ F ++TE+ I TP +V P Sbjct: 384 FKSRDFKDDKTELVIFVTPVVVYP 407 >gi|168703130|ref|ZP_02735407.1| putative outer membrane channel for pilus assembly CpaC [Gemmata obscuriglobus UQM 2246] Length = 577 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 109/405 (26%), Positives = 171/405 (42%), Gaps = 39/405 (9%) Query: 63 PVDV----QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 P D+ +DVL + P D P + L GK G + + ++ D L D++++ Sbjct: 68 PTDILNSREDVLGARPDPND-----PTKLLLTGKTAGLSQLTIVQKDAPP-LKFDVVVKP 121 Query: 119 DIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 D+A L +R + +++ VE + + +VL G V + D+ L+ N Sbjct: 122 DLAQLRKLIRDTVPTASVTVEPGLGNVIVLSGYVTSPSDADIVQRLA---------NSAV 172 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 ++ V+N + I G QV + V +A V R+ L+ GF ++ G S S + G Sbjct: 173 GGANANVINAVQIGGVQQVQIDVVVASVDRNQLRSRGFDFALPGRGSFSFSSLVSGLLG- 231 Query: 238 FVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 S GG +F V +RF L AL + LAEP + +G+ A F Sbjct: 232 VQSAGGVTTATFSPDSNFQFAVVPNRFF--GALRALRTEGVAKFLAEPRVVTQTGRPAFF 289 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPV-IGV 343 +GGQ + SS VT +G L P V G I L I T VS+ + I V Sbjct: 290 RAGGQQAIISGSSGITGPGVTLQPFGTELTVVPIVYGNGMIWLDINPRITAVSQGLGITV 349 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P + + +TV L SG T + GL+++ + +P+L +P G F Sbjct: 350 GGSSSPGFTEQSVQSTVLLESGQTFAIGGLIQNSVNASASKVPVLGDLPFAGTYFSRVEH 409 Query: 404 NREETEIFIAATPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFN 446 E+E+ I TP LV P+ + P DD + F N Sbjct: 410 TVRESELVILVTPRLVHPMDQCQGPKRLPGQETRSPDDYELFLEN 454 >gi|170725113|ref|YP_001759139.1| type II and III secretion system protein [Shewanella woodyi ATCC 51908] gi|169810460|gb|ACA85044.1| type II and III secretion system protein [Shewanella woodyi ATCC 51908] Length = 436 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 30/250 (12%) Query: 196 VTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVK--- 248 + ++V I E + L IG ++ S+ G + G +K+F+A+ F VS G +S Sbjct: 164 IKMQVKIVEFNKSTLNNIGIKWESSMAGPAYGAAKAFSANPIFS---VSSPGQYSETITS 220 Query: 249 ------GVLDRFSFE---------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 GVLD + + + L R LAEP LT SG+SA+F +GG+ Sbjct: 221 AITDSIGVLDTRGWNYFGIVTGIGSQIQLLSEKGDARMLAEPNLTTRSGESANFLAGGEF 280 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSY 351 ++VS GA V +YG+ L P V I R+ EVS +P + V+ +P Sbjct: 281 PIRSVSG-LGAVDVEYKEYGIKLDIEPVVDDDLNIVSRVMAEVSSIDPSVAVDG--IPGM 337 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ ++ + + + TIV++GL+ ++ ++ PLL IPILG LF++ F ++E+ Sbjct: 338 LTRRTESVINVKNNETIVISGLVNSEMSKIVNKFPLLGDIPILGELFKSRDFKDNKSELV 397 Query: 412 IAATPFLVKP 421 I TP +V P Sbjct: 398 IFVTPTVVYP 407 >gi|296124072|ref|YP_003631850.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] gi|296016412|gb|ADG69651.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] Length = 772 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 109/431 (25%), Positives = 178/431 (41%), Gaps = 66/431 (15%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML----------NLDILIERDI 120 ++DP DVV + PR + + G + G + L + L LD D Sbjct: 196 IADPNVIDVVQYGPREISIIGVSRGTTTLTLWFEGAAEPLIYLVKVIRDPALDFQRRLDY 255 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE-TFLSQSGR------ 173 LE L+ +S + + +S +V+ G R +++ + + ++Q G Sbjct: 256 GKLEKKLQTLFPNSKVYLIPMSYKIVVRGQARDAEEAAHILSIVRGEVINQEGSLGGPQP 315 Query: 174 -------------------------NQYANSS---SKKVMNLLNIAGEDQVTLKVTIAEV 205 N + +S + ++N L + GE QV+L V IAE+ Sbjct: 316 FLGGLGGDLGGGSSTIDNGAIGGIGNSFGGASDLAAGFIINELRVPGEFQVSLTVRIAEL 375 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----GGDFSVKGVLDRFSFETVLH 261 R + + G S+ F G + E GG ++ G+ D +L Sbjct: 376 NRSEMFKAGADISVL-------------FNGSQLIESSLTGGAATLGGIFDNGDVSILLD 422 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFT 319 L+ + L EP LT +SG+ A F +GG+ T+ GA S T +G + T Sbjct: 423 WLKTNGIGKILVEPRLTVLSGRQARFLAGGEFAVPTIIGIAGAQGQSTTFRGFGTSVLVT 482 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 PTVL I L E S+ + +P R+ DTTVE+ G T+ LAGL ++ Sbjct: 483 PTVLDRDLIRLSTIAEYSDLNQANSVQGIPGTNARRIDTTVEMREGQTLALAGLYSHLMK 542 Query: 380 QLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR-PDDHYSVE 437 IP L IP +G ALF ++E E+ I TP +V+P+ ++ P + Sbjct: 543 TNISKIPFLGDIPKIGPALFSRKEKTQDENELLILITPDIVRPMDPEEVPPVPGFEVTYP 602 Query: 438 DDAKAFFFNRV 448 D + F++NR+ Sbjct: 603 GDHEFFWYNRI 613 >gi|108762925|ref|YP_631309.1| outer membrane secretin family protein [Myxococcus xanthus DK 1622] gi|108466805|gb|ABF91990.1| protein transporter, outer bacterial membrane secretin (secretin) family [Myxococcus xanthus DK 1622] Length = 482 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 106/435 (24%), Positives = 184/435 (42%), Gaps = 69/435 (15%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +S+G+ ++ +P + V + DP+ A+V + + G+ G+ +++ G Sbjct: 28 GTTVSLGVGSQKVITIP-GLSRVALGDPSVAEVKTLGSGQLLITGQAEGKTTLLVWKSSG 86 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQR------ 159 +++ L + ++D + ++R + + + V MV D + L G T QD+ R Sbjct: 87 QRVSYLVAVRKQDPNEVISEIKRLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVG 146 Query: 160 -------------------AVELSETFLSQSGRNQYAN---------------------- 178 A L+ F +N AN Sbjct: 147 LYPNVKSFVKIAPNAKKLVAQNLNAAFQKAGLKNVQANVVGATIFLEGSVESQQDLQKAE 206 Query: 179 ----SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAA 232 + +KV NLL + + + +V E+RR+ + G ++ ITG+++ + Sbjct: 207 LITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYPTDITGTATAIASISQE 266 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPTLTAISGQSASFTSGG 291 F G F S ++ D FSF + R LA+P L SG+ A F +GG Sbjct: 267 LFPGTFGSGVSTLTLNANAD-FSF-----GFQGNDGYGRLLAQPKLVCASGEKAEFLAGG 320 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAG 346 + ++++ +V YGV+L+ PT G I I+ E SE V + Sbjct: 321 EVPIPLITNN--QFTVEFKKYGVILNLRPTADRNGNIQTEIEAEASEIDTSVAVSFGGSA 378 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P +R RK T V + G TIVL+G+ D Q+ +P L IPI+G LF++ F+ Sbjct: 379 SIPGFRTRKVKTNVTVRHGETIVLSGVFSHDEQKSVSKLPGLGHIPIIGELFKSRGFDST 438 Query: 407 ETEIFIAATPFLVKP 421 + E+ I TP +V P Sbjct: 439 KRELVIFVTPRIVNP 453 >gi|32477871|ref|NP_870865.1| type II secretion system protein [Rhodopirellula baltica SH 1] gi|32448428|emb|CAD77943.1| probable type II secretion system protein [Rhodopirellula baltica SH 1] Length = 704 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 137/306 (44%), Gaps = 28/306 (9%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 ++R L LSQ+G ++N + I GE QV LKVT+AEV R + IG Sbjct: 309 AERRRNLDPIALSQAG-----------IINQMKIVGEQQVMLKVTVAEVNRSAARSIGLN 357 Query: 217 HSITGSSSGPS--KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + + +G + +S + G + + LD + AL R RTLAE Sbjct: 358 FGVD-NDNGLTVFQSLTGNLASTQSQSGAN--ILASLDMGQVRLAIEALRRLNLSRTLAE 414 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 P L A++GQ A F +GGQ +SS V+ +GV L FTP + I L+ Sbjct: 415 PNLVAMNGQPADFQAGGQFPIPIISSGGVGNNLQGVSFVPFGVQLQFTPFIQDRDVIRLQ 474 Query: 332 IQTEVS--EPVIGVN------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + EVS + +G + + R TTV+L SG TI +AGLL+ + + Sbjct: 475 MNAEVSTRDESLGTSIGGGGGGTQVSGLNSRNFSTTVQLRSGQTIAVAGLLQTNYGASSD 534 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKA 442 P +PI+GA +R + E E+ I TP LV PV A + P D + Sbjct: 535 RTPFWGDLPIIGATGGVNRSSSGEQELVILVTPHLVAPVDACETPALPGSDVYEPSDIEF 594 Query: 443 FFFNRV 448 F NR+ Sbjct: 595 FIANRL 600 >gi|307295325|ref|ZP_07575164.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] gi|306878828|gb|EFN10047.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] Length = 412 Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 117/249 (46%), Gaps = 17/249 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSEGGDF 245 AGE V + V A V LK +GF S I G+ PS +A F +S Sbjct: 125 AGEQVVAVDVQFAAVSATTLKALGFNFSKLSGDIQGAIVSPSSLGSASFDPGGLSLEASA 184 Query: 246 SVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-- 297 ++ + F VL AL + LA+PTL SG+ ASF +GG+ Sbjct: 185 PIQNAFNLFLSAPNRGIGAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEFPVPVPQ 244 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRV 353 S S S+ ++GV L TP VLS I L+I EVSE + + +P R Sbjct: 245 ASGSGNMLSIQYKEFGVRLSVTPFVLSKDHIVLKIAPEVSELDYANGVQLQGYVVPGLRR 304 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R A+TTVEL SG + V+AGL KE P L +P+LGA F+ + +E+ E+ I Sbjct: 305 RSAETTVELGSGQSFVIAGLSYSSQTVTKEKTPFLGDLPVLGAFFKRQQNQKEKQELIIV 364 Query: 414 ATPFLVKPV 422 ATP LV V Sbjct: 365 ATPRLVTAV 373 >gi|327538064|gb|EGF24754.1| bacterial type II/III secretion system protein [Rhodopirellula baltica WH47] Length = 758 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 137/306 (44%), Gaps = 28/306 (9%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 ++R L LSQ+G ++N + I GE QV LKVT+AEV R + IG Sbjct: 363 AERRRNLDPIALSQAG-----------IINQMKIVGEQQVMLKVTVAEVNRSAARSIGLN 411 Query: 217 HSITGSSSGPS--KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + + +G + +S + G + + LD + AL R RTLAE Sbjct: 412 FGVD-NDNGLTVFQSLTGNLANTQNQSGAN--ILASLDMGQVRLAIEALRRLNLSRTLAE 468 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 P L A++GQ A F +GGQ +SS V+ +GV L FTP + I L+ Sbjct: 469 PNLVAMNGQPADFQAGGQFPIPIISSGGVGNNLQGVSFVPFGVQLQFTPFIQDRDVIRLQ 528 Query: 332 IQTEVS--EPVIGVN------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + EVS + +G + + R TTV+L SG TI +AGLL+ + + Sbjct: 529 MNAEVSTRDESLGTSIGGGGGGTQVSGLNSRNFSTTVQLRSGQTIAVAGLLQTNYGASSD 588 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKA 442 P +PI+GA +R + E E+ I TP LV PV A + P D + Sbjct: 589 RTPFWGDLPIIGATGGVNRSSSGEQELVILVTPHLVAPVDACETPALPGSDVYEPSDIEF 648 Query: 443 FFFNRV 448 F NR+ Sbjct: 649 FIANRL 654 >gi|118581113|ref|YP_902363.1| type II and III secretion system protein [Pelobacter propionicus DSM 2379] gi|118503823|gb|ABL00306.1| type II and III secretion system protein [Pelobacter propionicus DSM 2379] Length = 386 Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 123/277 (44%), Gaps = 22/277 (7%) Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV- 247 NI QV L+V +A++ + LK +G + ++ + S GD ++ Sbjct: 103 NIDDSQQVLLQVKVAQIDKTALKNLGVSFLVKNQNANGFSNMIGAPSTSSTSASGDGTIS 162 Query: 248 --KGVLDRFS---------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G++D FS V+ AL + LAEP L SGQ F +G Sbjct: 163 TANGIIDGFSSLNPYTMGITHFPSGVSAVIKALATKGMAKILAEPNLVVKSGQKGEFFAG 222 Query: 291 GQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ-TEVSEPVIGVNAGD 347 + + + + ST S+ + GV L+F P V+ G I L + EVS + Sbjct: 223 SRIPFSVLENTGSTSTPSIRWEEVGVKLNFKPFVMESGTIALELDPVEVSNIQGTLETNG 282 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P R T+ EL G ++VLAGLL+D+ + +PLL IPILGALFR + ++E Sbjct: 283 YPVIDTRTIKTSAELRDGESLVLAGLLRDETYKSISKVPLLGDIPILGALFRTTENEQKE 342 Query: 408 TEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAF 443 TE+ TP LV P V + P D + K F Sbjct: 343 TELVFFITPKLVMPEVPGVKVELPTDKQLTPEQEKEF 379 >gi|311697132|gb|ADQ00004.1| type II and III secretion system protein [marine bacterium HP15] Length = 373 Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 124/252 (49%), Gaps = 15/252 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR- 253 QV + I EV R L +G +S + + + + G F G G+ Sbjct: 94 QVQTDIRIVEVNRSELNTLGVYYSKLFNGGSQTIALSPPGAGGFRGFGPSAGATGITTEG 153 Query: 254 -------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 S ++++ALE TLAEP+L ++SGQ+A+F SGG+ VSS G Sbjct: 154 FNLFSFGSSSLSIINALESGGFAYTLAEPSLVSLSGQTATFLSGGEFPIP-VSSDNGEVE 212 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDM--PSYRVRKADTTVEL 362 + ++GV L TPTV+S I L++ EVSE GV+ G + P R+R+ TTV + Sbjct: 213 IEFKEFGVSLALTPTVVSDDEIILKVAPEVSELDFTSGVSTGGVAVPGLRIRRTQTTVTM 272 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G + +++GL+ + IP L +P++GA FR+ R E+ E+ + TP V Sbjct: 273 APGESFIISGLVSRATTNRSDRIPGLGNLPVIGAFFRSDRVASEDKELIMVVTPKFVS-- 330 Query: 423 AMRDLSRPDDHY 434 A + LSR ++ Sbjct: 331 AQKQLSREARNF 342 >gi|33593509|ref|NP_881153.1| putative secretory apparatus [Bordetella pertussis Tohama I] gi|33572865|emb|CAE42800.1| putative secretory apparatus [Bordetella pertussis Tohama I] gi|332382917|gb|AEE67764.1| putative secretory apparatus [Bordetella pertussis CS] Length = 470 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 100/356 (28%), Positives = 160/356 (44%), Gaps = 51/356 (14%) Query: 89 LFGKNVGQANV-ILIGHDGKQMLNLDIL------IERDIAHLEMTLRRFIADSNIRVEMV 141 LF + G ++V I G +Q +++L + ++A L + R R V Sbjct: 82 LFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLREEVAALLARIPR------ARSSAV 135 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKV 200 +V+ G + D R L++ + +V++ G D+ V L V Sbjct: 136 GAHIVIEGSQLSEDDHARIAALAQRY--------------PEVLDFTGRVGWDRMVLLDV 181 Query: 201 TIAEVRRDILKQIGFQ---------HS---ITGSSSGPSKSFAADFGGKFVSE-GGDFSV 247 + E+ R L+++G + H+ GSS+ + G V GG V Sbjct: 182 QVVELPRQSLRELGLRWDEPAVGGVHAGAVWNGSSAALAPPPGPLAGAAAVRHAGGLLGV 241 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 +L L AL + LA+P L A SG +ASF +GG+ Y+T T++ Sbjct: 242 NALLS-----ARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYRTTDKEGNGTTL 296 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSG 365 YGV L TP + + G + RI+ E S +P + + AG P+ R R+A T + SG Sbjct: 297 F-KPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAG--PALRKRRAVTEFNVHSG 353 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 T+VL G L + ++G+P LS++P++GALF R ETE+ I TP +V P Sbjct: 354 QTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTPTIVSP 409 >gi|307726635|ref|YP_003909848.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] gi|307587160|gb|ADN60557.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] Length = 642 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 112/428 (26%), Positives = 189/428 (44%), Gaps = 77/428 (17%) Query: 80 VVHSPRTMY--------LFGKNVGQANVILIG-HDGKQMLNLDILIERDIAHLEMTLRRF 130 ++H P T+ L NV N++L+G DG M +L + E+ IA L+ T+R Sbjct: 60 ILHVPGTIKRIAIGNGKLITANVVDGNLMLLGEQDG--MTSLVVWNEKGIA-LQTTVRIA 116 Query: 131 IADSN---------------IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 ++ N +R++ + +VL G++ R+ Sbjct: 117 KSEVNASLQQLRAVLKSVSGLRIDAIGSNIVLSGVIH--------------------RDM 156 Query: 176 YA--NSSSKKVMNLLNIAGEDQ-------VTLKVTIAEVRRDILKQIG--FQHSITGSSS 224 A S+++ + N+++ D+ V KV I EV R+ + +G + + G Sbjct: 157 VAVVKSATQDMKNVVDTTTVDEGEALRKTVHFKVQIMEVTRNAQRNLGIAWDSAFRGPQI 216 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G + S A K V+ G + + G+ S + + A+ A LA P L SG + Sbjct: 217 GGAASVATG-AAKAVTAGTSYFLAGIASNISSQ-INFAVNNGDAF-ILAAPELNTRSGGT 273 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 ASF +GGQ + S + G T+V DYGV L P V + G I + TE+S+ V+ Sbjct: 274 ASFLAGGQ-VPIPQSGALGTTNVMYKDYGVKLSINPVVDANGIISAHLTTEISQIDPTVS 332 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 G +P + R + + + +G T+ ++GL+ D +G+P L +IP++G LFR+ F Sbjct: 333 YGGLPGFLTRSTSSDISMRTGETLAISGLISADAVNDSDGMPFLGQIPVIGQLFRSDSFR 392 Query: 405 REETEIFIAATPFLVKP--VAMRDL----SRPDDHYS---------VEDDAKAFFFNRVN 449 +++++ I TP + P DL R D Y V D+ KA N V+ Sbjct: 393 AKKSDLVIFVTPLISDPELAPNTDLLARADRIDSGYVNKFGNPEPLVADEEKAAHINAVH 452 Query: 450 KIYGPKEA 457 + P A Sbjct: 453 QPIQPTPA 460 >gi|292670351|ref|ZP_06603777.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648082|gb|EFF66054.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 426 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 24/237 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSE----GGDFSVKG 249 QV+L+ + + ++ KQ+G S + P + D GG + V E G S G Sbjct: 185 QVSLEARVVAISKEAAKQLGVDWSWSSLPQYPRVQY--DRGGSWRVGERNAGTGGTSAPG 242 Query: 250 VLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 ++ F + + AL + LA P +T I G+ A G + V+ Sbjct: 243 IIRFGRGPEGLPYEFYYSAAIRALITEGKAKMLARPNVTTIQGREALINIGAEVPVPRVA 302 Query: 300 SSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK-- 355 +S T+ + + G++L +TP V + G I R+ TEVS PV D+ +YR +K Sbjct: 303 TSNNVTTTGIEYREAGIILRYTPRVTADGNIVARVHTEVSTPVY---VEDLKAYRFQKRS 359 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 ADTTV L +G T+V+ GL+ D + IP L +P+LGA FR+ R +R ETE+ I Sbjct: 360 ADTTVRLKNGETMVIGGLIDSDESRSLSKIPFLGDLPVLGAFFRSVRTSRTETELMI 416 >gi|329912918|ref|ZP_08275837.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480] gi|327545493|gb|EGF30693.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480] Length = 608 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 165/361 (45%), Gaps = 44/361 (12%) Query: 85 RTMYLFGKNVGQANVILIGHDGK-QMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVS 142 + + +F VG +++ + DG+ Q + + I + D + + F+ S R ++ Sbjct: 151 KEVIVFANGVGTSSLFVWNADGRYQRVKVSI-VPGDTTRIARDVTAFLKSMSGTRTSIIG 209 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG-EDQVTLKVT 201 D V++ G D+ VEL++ + + +Y +++N N G E V L V Sbjct: 210 DKVIIEG------DNLSDVELAKIDMLE---KRY-----PQIINFTNQLGWEPMVMLDVK 255 Query: 202 IAEVRRDILKQIGFQHSITGSSS-------------GP----------SKSFAADFGGKF 238 + E + L+ IG + G ++ GP + + + G Sbjct: 256 VVEFPTNELRDIGLKWGSVGGAAVGAIWSPGRRGTDGPYQVNIQSANAAPITSPEGSGSP 315 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 V G +V L+ L+ L + LA+P L+A SG ASF +GG+ Y +V Sbjct: 316 VRVPGGLNVLSALN-LGLNAQLNLLAQQGKASLLAQPQLSARSGTKASFLAGGEFPY-SV 373 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 ++ G T V YG+ L P V G I I EVS+ V+ P+ + RK T Sbjct: 374 ATINGVT-VQFKPYGIKLDILPKVDRNGVIRATIDAEVSKIDASVSTVVGPALQTRKTKT 432 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + +G TIVLAG+L+ D + +PLL +P+LGALFR+ RF +ETE+ + TP + Sbjct: 433 EFNVLAGDTIVLAGMLQADNSTSIDKVPLLGDVPVLGALFRSKRFENKETELVVFVTPTI 492 Query: 419 V 419 V Sbjct: 493 V 493 >gi|190149865|ref|YP_001968390.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307249759|ref|ZP_07531737.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307256574|ref|ZP_07538355.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307263189|ref|ZP_07544810.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914996|gb|ACE61248.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306858174|gb|EFM90252.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306864984|gb|EFM96886.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871551|gb|EFN03274.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 462 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 105/397 (26%), Positives = 179/397 (45%), Gaps = 51/397 (12%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM---LNLDIL 115 +++ + + VS AD + + L+ K G++ VI +G + Sbjct: 39 LIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDANGTPLTEDFVNVNN 98 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAVELS-------- 164 +IA ++ +SN+ V+ V VL G + +S R V S Sbjct: 99 AINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEINRIVGESLGAGKKVI 158 Query: 165 ETFLSQSG---------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 ET L + + QY + V+N N Q+ +K+T+AEV + +IG Sbjct: 159 ETKLKHNNSEENVPFLDKYQY-----EGVINNANEENATQINVKLTVAEVNKTFSDEIGI 213 Query: 216 QHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 S S +F + G G F GG ++ ++ + ++ AL+ + Sbjct: 214 NWS------NLSGNFFRNLGNAAIQGNFNKNGGQLAL---VNSNNLNVLISALDNQNNGK 264 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP ++ +SG++A GG+ + G SV ++G+ L V RI L Sbjct: 265 ILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDRIRL 323 Query: 331 RIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEGI 385 + VS + G VN+ +P + R++ +T E+ +G + +++GLL K DI+ +K+ + Sbjct: 324 VLSQSVS-TIAGNYEIVNS-RIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK-V 380 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 P+L IPILGA FRN+ +RE E+ + AT LVKPV Sbjct: 381 PVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPV 417 >gi|165975974|ref|YP_001651567.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876075|gb|ABY69123.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 462 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 105/397 (26%), Positives = 179/397 (45%), Gaps = 51/397 (12%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM---LNLDIL 115 +++ + + VS AD + + L+ K G++ VI +G + Sbjct: 39 LIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDANGTPLTEDFVNVNN 98 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAVELS-------- 164 +IA ++ +SN+ V+ V VL G + +S R V S Sbjct: 99 AINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEINRIVGESLGAGKKVI 158 Query: 165 ETFLSQSG---------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 ET L + + QY + V+N N Q+ +K+T+AEV + +IG Sbjct: 159 ETKLKHNNSEENVPFLDKYQY-----EGVINNANEENATQINVKLTVAEVNKTFSDEIGI 213 Query: 216 QHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 S S +F + G G F GG ++ ++ + ++ AL+ + Sbjct: 214 NWS------NLSGNFFRNLGNAGIQGNFNKNGGQLAL---VNSNNLNVLISALDNQNNGK 264 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP ++ +SG++A GG+ + G SV ++G+ L V RI L Sbjct: 265 ILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDRIRL 323 Query: 331 RIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEGI 385 + VS + G VN+ +P + R++ +T E+ +G + +++GLL K DI+ +K+ + Sbjct: 324 VLSQSVS-TIAGNYEIVNS-RIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK-V 380 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 P+L IPILGA FRN+ +RE E+ + AT LVKPV Sbjct: 381 PVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPV 417 >gi|307245412|ref|ZP_07527500.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254367|ref|ZP_07536205.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258825|ref|ZP_07540557.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261005|ref|ZP_07542687.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306853753|gb|EFM85970.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862666|gb|EFM94622.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867176|gb|EFM99032.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869307|gb|EFN01102.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 462 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 105/397 (26%), Positives = 179/397 (45%), Gaps = 51/397 (12%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM---LNLDIL 115 +++ + + VS AD + + L+ K G++ VI +G + Sbjct: 39 LIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDANGTPLTEDFVNVNN 98 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAVELS-------- 164 +IA ++ +SN+ V+ V VL G + +S R V S Sbjct: 99 AINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEINRIVGESLGAGKKVI 158 Query: 165 ETFLSQSG---------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 ET L + + QY + V+N N Q+ +K+T+AEV + +IG Sbjct: 159 ETKLKHNDGEENVPFLDKYQY-----EGVINNANEENATQINVKLTVAEVNKTFSDEIGI 213 Query: 216 QHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 S S +F + G G F GG ++ ++ + ++ AL+ + Sbjct: 214 NWS------NLSGNFFRNLGNAAIQGNFNKNGGQLAL---VNSNNLNVLISALDNQNNGK 264 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP ++ +SG++A GG+ + G SV ++G+ L V RI L Sbjct: 265 ILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDRIRL 323 Query: 331 RIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEGI 385 + VS + G VN+ +P + R++ +T E+ +G + +++GLL K DI+ +K+ + Sbjct: 324 VLSQSVS-TIAGNYEIVNS-RIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK-V 380 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 P+L IPILGA FRN+ +RE E+ + AT LVKPV Sbjct: 381 PVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPV 417 >gi|121607248|ref|YP_995055.1| type II and III secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121551888|gb|ABM56037.1| type II and III secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 714 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 94/360 (26%), Positives = 166/360 (46%), Gaps = 47/360 (13%) Query: 85 RTMYLFGKNVGQANVILIGHDGK-QMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVS 142 R + +F VG +++ + DG+ Q + +++ + D + + F++ +N + ++ Sbjct: 122 REVIVFANEVGTSSLFVWNEDGRYQRVKINV-VPGDTSRYAREIAAFLSTIANTKASIIG 180 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN-IAGEDQVTLKVT 201 D V++ G D+ ++L + + R Y +++N N I E V + V Sbjct: 181 DKVIVEG------DNLSDIDLRKI---EDLRKHY-----PQIVNFTNQIGWEQMVLMDVK 226 Query: 202 IAEVRRDILKQIGFQHSITGSSS-----GPSKSF---------------AADFGGKFVSE 241 + E + L+++G + + G +S P + AAD G + Sbjct: 227 VVEFPVNELRELGLRWAAKGGASIGGIWSPIRRVHQDGLRIDVESPPITAAD--GDLIPL 284 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 ++ L+ L L LA+P L+A +G A F +GG++ Y V+SS Sbjct: 285 PKGLNILSALN-MGLGAKLDLLASQGKASILAQPQLSARNGAKAEFLAGGEYPY--VASS 341 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTT 359 +V YG+ L TP V G I I +EVS +P I AG P+ VR+ T Sbjct: 342 INGPTVMFKPYGIRLKITPRVDRNGVIRAEIDSEVSNIDPSISTAAG--PALSVRRTFTE 399 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+VL+GL+ Q + +P L +P+LGALFR+ RF +ETE+ + TP ++ Sbjct: 400 FNVQNGETMVLSGLMSRKTSQNIDKVPFLGDLPVLGALFRSKRFQNDETELVVFVTPTVI 459 >gi|319779649|ref|YP_004130562.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella equigenitalis MCE9] gi|317109673|gb|ADU92419.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella equigenitalis MCE9] Length = 508 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/303 (25%), Positives = 140/303 (46%), Gaps = 32/303 (10%) Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 N++ +++D V++ G + D ++ V+L++ + Q + SS+ + ++ Sbjct: 121 NVKTSVIADKVIVEGDKLSDFDREKVVQLTKHY------PQIIDMSSQ-------VGWDE 167 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKSFAADFGGKFVSEG 242 + + V I E+ R ++Q+G + T GS++ + ++ ++ V Sbjct: 168 MLMIDVQIVELPRQFVQQLGLRWGTTAEGGVQIGATLEGSTAKKAFAYQSNLLANSVGNA 227 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIR----TLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + L+A A A+ LA+P LTA +G +A F +GG+ Y V Sbjct: 228 GAIANPAFFG--GINAFLNASINAMAVEGQAVVLAQPQLTARNGTTAEFLAGGEVPYSMV 285 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 A +V YGV L+ TP + G + +I EVS +N P+ + R+ T Sbjct: 286 DDKGQAQTVF-KPYGVSLNITPRIQRDGTVRSKINVEVSTVDTSMNLNGGPALKTRRTST 344 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 SG IV++G + D Q +P +++ PILG LF++ F ETE+ I P++ Sbjct: 345 EFNTKSGEPIVISGFISRDQMQSMTKVPGIAETPILGELFKSRNFQNNETELVIIVRPYV 404 Query: 419 VKP 421 VKP Sbjct: 405 VKP 407 >gi|46143341|ref|ZP_00204447.1| COG4964: Flp pilus assembly protein, secretin CpaC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208037|ref|YP_001053262.1| rough colony protein A [Actinobacillus pleuropneumoniae L20] gi|126096829|gb|ABN73657.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 462 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 105/397 (26%), Positives = 179/397 (45%), Gaps = 51/397 (12%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM---LNLDIL 115 +++ + + VS AD + + L+ K G++ VI +G + Sbjct: 39 LIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDANGTPLTEDFVNVNN 98 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRAVELS-------- 164 +IA ++ +SN+ V+ V VL G + +S R V S Sbjct: 99 AINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEINRIVGESLGAGKKVI 158 Query: 165 ETFLSQSG---------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 ET L + + QY + V+N N Q+ +K+T+AEV + +IG Sbjct: 159 ETKLKHNDSEENVPFLDKYQY-----EGVINNANEENATQINVKLTVAEVNKTFSDEIGI 213 Query: 216 QHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 S S +F + G G F GG ++ ++ + ++ AL+ + Sbjct: 214 NWS------NLSGNFFRNLGNAAIQGNFNKNGGQLAL---VNSNNLNVLISALDNQNNGK 264 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP ++ +SG++A GG+ + G SV ++G+ L V RI L Sbjct: 265 ILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDRIRL 323 Query: 331 RIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEGI 385 + VS + G VN+ +P + R++ +T E+ +G + +++GLL K DI+ +K+ + Sbjct: 324 VLSQSVS-TIAGNYEIVNS-RIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK-V 380 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 P+L IPILGA FRN+ +RE E+ + AT LVKPV Sbjct: 381 PVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPV 417 >gi|227824391|ref|ZP_03989223.1| type II and III secretion system protein [Acidaminococcus sp. D21] gi|226904890|gb|EEH90808.1| type II and III secretion system protein [Acidaminococcus sp. D21] Length = 424 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 18/233 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QVTL+ I ++ D +++G Q +G S+ ++GG F + G Sbjct: 160 QKQVTLEARILSLQEDASRELGLQWKWSGLPQQNSEE----------TDGGTFHL-GHGY 208 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-- 310 SF+ +L AL + + LA P + + G+ G T S G T+ +T Sbjct: 209 TGSFQGILSALCQKGKAKVLATPRIVTVPGKEGKIFIGDHIPVVTEKVSNGTTTTSTEYV 268 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTI 368 D G+ L +TP V G I + TEVS P + ++ +YR+ R ADT V L G T+ Sbjct: 269 DAGIRLSYTPIVGPDGVITASVHTEVSTPTL---ISELHNYRITSRTADTNVRLLEGETL 325 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 V+ GL+ D+ Q+ E IPLLSK+P+LG LF + TE+ + TP+L +P Sbjct: 326 VIGGLISDEEQKRLETIPLLSKLPLLGNLFTFRSRKKTRTEVVMLLTPYLTEP 378 >gi|283778969|ref|YP_003369724.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283437422|gb|ADB15864.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 684 Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 91/294 (30%), Positives = 134/294 (45%), Gaps = 34/294 (11%) Query: 156 DSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D QR V+ + FL Q+ + A + ++NLL I GE QV L+VT+AEV R + I Sbjct: 319 DQQRDPLVDQDQAFLRQTVVDS-ALLARSGIINLLQIPGEQQVMLRVTVAEVNRTAARSI 377 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHALERATAIRTL 272 G S+ + + F G + GG+ S V LD ++AL +TL Sbjct: 378 GLNFSVQNNQG--TTVFQNLTGQLGAAGGGNLSNVLASLDNGQVILAINALRSLRLAKTL 435 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGL 330 AEP LT ++GQ A+F +GG + G T +GV + FTP V+ RI L Sbjct: 436 AEPNLTTLNGQQATFRAGGSFPVPQIGGLGGTGLQGTVFVPFGVSIEFTPYVIDRDRIRL 495 Query: 331 RIQTEVS------------------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 ++ VS V G+N+ R D+TVEL G T+ +AG Sbjct: 496 KLSAGVSVRDESLGTSIGGSAGAGGTQVAGLNS--------RTFDSTVELREGQTLAVAG 547 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L++ ++ + +P +PI+G SR E E+ I TP LV P+ D Sbjct: 548 LIQTNMGADSDRVPFWGDLPIIGHTGGFSRTTAGEQELVILVTPELVHPLEACD 601 >gi|238750896|ref|ZP_04612393.1| Type II/III secretion system protein [Yersinia rohdei ATCC 43380] gi|238710810|gb|EEQ03031.1| Type II/III secretion system protein [Yersinia rohdei ATCC 43380] Length = 316 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 84/309 (27%), Positives = 143/309 (46%), Gaps = 29/309 (9%) Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 AD + ++ ++ KN G A IL + K + +++ I ++ S I Sbjct: 7 ADYELVGKNSVIVYAKNEGVAEFILFDQNHKPITKSVVMVNNIITLATKRIQAEYPGSII 66 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGR---NQYANSSS-KKVMNLLNIA 191 + + ++ +L G V + + V + E S+ + NQY N++ ++N + + Sbjct: 67 DISKIGNSYILTGTVESEEARDTIVNIVGEAIGSKKNKGSDNQYINTNDYPGIVNKIKLP 126 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 +QV +K+TIAEV +D + IG S G++ G + F F+ KG+ Sbjct: 127 QSNQVNVKLTIAEVTKDFTENIGINWSTIGNNVGAFQFF-------------QFNAKGI- 172 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 T++HA+ R LAEP L+ +SG++ASF GG+ S+S + + Sbjct: 173 -----STLVHAINDDAIARVLAEPNLSVLSGETASFLVGGE--IPIASTSQNGVKIDYKE 225 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368 +G+ L+ V RI + + EVS V GD PS R RKA TT+EL G + Sbjct: 226 FGIKLNIGAKVNDKKRIRIMLNEEVSSIGKSFNVTGGDSYPSLRTRKAATTLELGDGESF 285 Query: 369 VLAGLLKDD 377 +L GL+ + Sbjct: 286 ILGGLISSN 294 >gi|148556416|ref|YP_001263998.1| type II and III secretion system protein [Sphingomonas wittichii RW1] gi|148501606|gb|ABQ69860.1| type II and III secretion system protein [Sphingomonas wittichii RW1] Length = 431 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 86/272 (31%), Positives = 124/272 (45%), Gaps = 37/272 (13%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 +S+ + N L++ GE V + V A V L+ +GF S + D G Sbjct: 129 SSADRGAANSLSVNGEQVVAVDVQFAAVSSSTLRALGFNFS----------KLSGDLQGA 178 Query: 238 FVSEG--GDFS-------------VKGVLDRF------SFETVLHALERATAIRTLAEPT 276 VS G+FS ++ + F VL AL + LA+PT Sbjct: 179 IVSPATLGNFSSTSTGLTLDTTAPLQNAFNLFLSAPNRGITAVLSALSSNGLSQLLAQPT 238 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQT 334 L SG+ ASF +GG+ ++ + ++GV L TP VLS RI L+I Sbjct: 239 LLVRSGEQASFLAGGEVPIPVPQNNGNGNGIGIEYKEFGVRLKVTPFVLSKDRIVLKIAP 298 Query: 335 EVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE + + +P R R +TTV+L SG + V+AGL + KE P L Sbjct: 299 EVSELDYTNGVRLQGYVVPGLRRRSTETTVQLGSGQSFVIAGLTYSNSVVSKEKTPFLGD 358 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +P+LGALF+ + RE E+ I ATP LV P+ Sbjct: 359 LPVLGALFKRQQNQRESQELIIVATPRLVGPM 390 >gi|33601080|ref|NP_888640.1| putative secretory apparatus [Bordetella bronchiseptica RB50] gi|33575515|emb|CAE32593.1| putative secretory apparatus [Bordetella bronchiseptica RB50] Length = 470 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 99/357 (27%), Positives = 160/357 (44%), Gaps = 53/357 (14%) Query: 89 LFGKNVGQANV-ILIGHDGKQMLNLDIL------IERDIAHLEMTLRRFIADSNIRVEMV 141 LF + G ++V I G +Q +++L + ++A L + R R V Sbjct: 82 LFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLREEVAALLARIPR------ARSSAV 135 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKV 200 +V+ G + D R L++ + +V++ G D+ V L V Sbjct: 136 GAHIVIEGSQLSEDDHARIAALAQRY--------------PEVLDFTGRVGWDRMVLLDV 181 Query: 201 TIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFG-----GKFVSEGGDFSV 247 + E+ R L+++G + + +G S + A G GG V Sbjct: 182 QVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGPLSGAAAVRHAGGLLGV 241 Query: 248 KGVLDRFSFETVLHAL-ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 +L L AL +R A+ LA+P L A SG +ASF +GG+ Y+ T+ Sbjct: 242 NALLS-----ARLSALAQRGEAV-LLAQPQLLARSGATASFQAGGELPYRATDKEGNGTT 295 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPS 364 + YGV L TP + + G + RI+ E S +P + + AG P+ R R+A T + S Sbjct: 296 LF-KPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAG--PALRKRRAVTEFNVHS 352 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G T+VL G L + ++G+P LS++P++GALF R ETE+ I TP +V P Sbjct: 353 GQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTPTIVSP 409 >gi|317403407|gb|EFV83920.1| hypothetical protein HMPREF0005_02046 [Achromobacter xylosoxidans C54] Length = 453 Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 104/390 (26%), Positives = 166/390 (42%), Gaps = 37/390 (9%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G+ ++ +G ++V+ V V + D + R + +F + G +++ + Sbjct: 25 GQTLEMQVGESRVL---AESGVTRVAIGDSQVLSAIATDSREVVVFARTEGVSSIQVWAD 81 Query: 105 DGKQMLNLDIL---IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G Q ++ + + R A ++ L R R +V VV+ G + D R Sbjct: 82 GGVQAYDVHVAAAGVTRLRAEVDALLARI---PGARSSLVGGRVVVEGDDLSDDDHARIA 138 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVTIAEVRRDILKQIGFQHSIT 220 L+E + +VM+ G D V L V + E+ R L++IG + Sbjct: 139 ALAEHY--------------PEVMDFTGRVGWDSMVQLDVQVVEMPRSRLREIGVRWEGL 184 Query: 221 GSSSGPSKSFAADFG--GKFVSEGGDF-----SVKGVLDRFSFETVLHA----LERATAI 269 + G + A D G G+ G V V F +L A L ++ Sbjct: 185 -TQGGVNAGLAWDAGSLGRMARPGEAVIDTPAPVSSVAGYFGVNALLSARIAALAQSGEA 243 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 LA+P L A SG SA+F +GG+ Y + + S G + YGV L TP + G I Sbjct: 244 VMLAQPQLLARSGASATFLAGGEVPYVS-TDSRGNPTTLFKPYGVSLRITPRIDRNGVIR 302 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 I+ E S + + P+ R R+A T + SG T+V+ G L + G+P L Sbjct: 303 SLIEVEASSVDMALTGASGPALRTRRASTEFNVRSGDTLVIGGFLSRERADDSSGLPGLK 362 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IPILGALF + R+ ETE+ I TP +V Sbjct: 363 DIPILGALFASRRYQLRETELAIFVTPRIV 392 >gi|237653358|ref|YP_002889672.1| type II and III secretion system protein [Thauera sp. MZ1T] gi|237624605|gb|ACR01295.1| type II and III secretion system protein [Thauera sp. MZ1T] Length = 479 Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 97/385 (25%), Positives = 169/385 (43%), Gaps = 48/385 (12%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 D Q + V D V R + L G + + G+ + + D A + Sbjct: 70 DAQRLAVGDAKVLSAAVLDDREILLIANGPGDTMLQVWTRSGRSQRIKITVRQTDTARIA 129 Query: 125 MTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 L+ F+ D +R + D VV+ G + + + EL++ F + Sbjct: 130 RDLQGFLHDVPRLRTRTIGDNVVIEGEGLSDAERDKVTELAKRF--------------PQ 175 Query: 184 VMNLLNIAGEDQV-TLKVTIAEVRRDILKQIGFQHSITGS-------------SSGPSKS 229 +++ + G D++ V E+ R L+ +G + G + + Sbjct: 176 LIDFTSRVGLDRMFAFDVRFVEISRSGLRDLGIDWTTQGKPLLGIGVIGDLYHDNRTGAT 235 Query: 230 FAADFG-GKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 G G+ SE + ++ G SF L+ L + LA P L Sbjct: 236 VTRTLGSGELSSEVEIEANRVSPFAANVALVG-----SFFGRLNLLAQKGDAVILASPRL 290 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH-FTPTVLSPGRIGLRIQTEV 336 +A + ASF +GG+ + V+S+TG SVT +YG+ L+ P + G I RI+TEV Sbjct: 291 SARNRGEASFLAGGE-IPVPVASATGTPSVTFKEYGIRLNILEPVADAAGTIRARIRTEV 349 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 S V A +P R+ +T L +G T+VL+G+L+ + Q + +P L ++P++G Sbjct: 350 SSLDRSVAAQGVPGLLSRRTETEFNLRNGETLVLSGVLQREQQSDENALPHLGELPVIGR 409 Query: 397 LFRNSRFNREETEIFIAATPFLVKP 421 LFR++RFN E+E+ + TP+L++P Sbjct: 410 LFRSTRFNSRESELVVFVTPWLLEP 434 >gi|33596527|ref|NP_884170.1| putative secretory apparatus [Bordetella parapertussis 12822] gi|33566296|emb|CAE37209.1| putative secretory apparatus [Bordetella parapertussis] Length = 470 Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 96/356 (26%), Positives = 158/356 (44%), Gaps = 51/356 (14%) Query: 89 LFGKNVGQANV-ILIGHDGKQMLNLDIL------IERDIAHLEMTLRRFIADSNIRVEMV 141 LF + G ++V I G +Q +++L + ++A L + R + + V Sbjct: 82 LFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLREEVAALLARIPRAHSSA------V 135 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKV 200 +V+ G + D R L++ + +V++ G D+ V L V Sbjct: 136 GAHIVIEGSQLSEDDHARIAALAQRY--------------PEVLDFTGRVGWDRMVLLDV 181 Query: 201 TIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFG-----GKFVSEGGDFSV 247 + E+ R L+++G + + +G S + A G GG V Sbjct: 182 QVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGPLAGAAAVRHAGGLLGV 241 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 +L L AL + LA+P L A SG +ASF +GG+ Y+ T++ Sbjct: 242 NALLS-----ARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYRATDKEGNGTTL 296 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSG 365 YGV L TP + + G + RI+ E S +P + + AG P+ R R+A T + SG Sbjct: 297 FK-PYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAG--PALRKRRAVTEFNVHSG 353 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 T+VL G L + ++G+P LS++P++GALF R ETE+ I TP +V P Sbjct: 354 QTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTPTIVSP 409 >gi|91777217|ref|YP_552425.1| putative type II and III secretion system outermembrane protein, secretin [Burkholderia xenovorans LB400] gi|91689877|gb|ABE33075.1| Putative type II and III secretion system outermembrane protein, secretin [Burkholderia xenovorans LB400] Length = 595 Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 95/346 (27%), Positives = 161/346 (46%), Gaps = 26/346 (7%) Query: 89 LFGKNVGQANVILIG-HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 L NV +++L+G DG + +L + ++ IA L+ T+R A+ N +E L Sbjct: 83 LLTANVVDGSLMLLGEQDG--ITSLVVWNDKGIA-LQTTVRIAKAEVNASLEQ------L 133 Query: 148 HGMVRTIQDSQRAVELSETFLS------QSGRNQYANSSSKKVMNLLNIAGEDQ----VT 197 ++R++ + S LS +G + A K V++ D V Sbjct: 134 RAVLRSVAGLRIDAIGSNIVLSGVIHRDMAGTVKAATQEMKNVVDTTTFDEGDALRKTVH 193 Query: 198 LKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 KV I EV R + +G + + G G + S A K ++ G + + G+ + Sbjct: 194 FKVQIMEVTRTGQRNLGIAWDSAFRGPQIGGAASVATG-AAKAITAGTSYFLAGIASNIT 252 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + + A+E A LA P L SG +ASF +GGQ + S + G TS+ DYG+ Sbjct: 253 SQ-INFAVENGDAY-VLAAPELNTKSGGTASFLAGGQ-VPIPQSGALGTTSIEYKDYGIK 309 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L P V + I + TE+S+ V MP + R + + + +G T+ ++GL+ Sbjct: 310 LSIVPVVDANNIISAHLTTEISQIDPSVTYAGMPGFLTRNTSSDISMRAGETLAISGLVS 369 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P LS++PI+G LFR+ RF +++++ I TP + P Sbjct: 370 ADAANDSNGMPFLSQVPIIGQLFRSDRFRAKKSDLVIFVTPVISDP 415 >gi|121533454|ref|ZP_01665282.1| type II and III secretion system protein [Thermosinus carboxydivorans Nor1] gi|121308013|gb|EAX48927.1| type II and III secretion system protein [Thermosinus carboxydivorans Nor1] Length = 414 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 19/239 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG--------SSSGPSKSFAADFGGKFVSEGGDF 245 +QV+L+ + + R+ K +GF +G S+SG +K+ ++ G + G + Sbjct: 183 EQVSLEAQVVAINRNAAKDLGFDWQWSGLPANTEFDSTSGTTKT-TREYPG-VIKFGKAY 240 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 G F+F+ L AL + + LA+P +T I+G+ A G + + G T Sbjct: 241 D--GTPYEFTFQAKLSALITSGEAKLLAKPKITTINGKEAKILIGDRIPVLVERTENGKT 298 Query: 306 SVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVE 361 + T D G+ L +TP + + G I + TEVS P + +M +YRV R+A T V Sbjct: 299 TTTIEYIDAGIKLTYTPRINADGYITAAVHTEVSTPTL---VPEMKAYRVTTREATTNVR 355 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G T+V+ GL+ ++ K +PLLS +P+LG LF + + ETE+ I T +VK Sbjct: 356 MKDGDTMVIGGLISNEESGGKNRVPLLSDLPVLGKLFESVHKTKNETEVVIFLTARIVK 414 >gi|167646061|ref|YP_001683724.1| general secretion pathway protein D [Caulobacter sp. K31] gi|167348491|gb|ABZ71226.1| general secretion pathway protein D [Caulobacter sp. K31] Length = 681 Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 6/176 (3%) Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---VSSSTGATS 306 +L+R S L AL T + L+ P L ++ Q+AS G Q T ++SS+ +S Sbjct: 479 LLNRSSIAATLDALSSVTHVEVLSAPNLMVLNNQTASLEVGDQVPVSTGSALNSSSVISS 538 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPS 364 + D GV+L TP V S G + L I EVS+ P + D P+ VRK T++ + Sbjct: 539 IEYRDTGVLLKITPRVNSGGLVLLDIAQEVSDVSPTLSSTI-DSPTISVRKIATSIAVQD 597 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+ L GL++D+ ++L+ G+P LS +P+LGAL + +RE TE+ + TP +++ Sbjct: 598 GQTVALGGLIRDNNKRLRNGVPFLSAVPVLGALAGSRDNSRERTELLVLLTPRVLR 653 >gi|303229539|ref|ZP_07316327.1| bacterial type II and III secretion system protein [Veillonella atypica ACS-134-V-Col7a] gi|302515664|gb|EFL57618.1| bacterial type II and III secretion system protein [Veillonella atypica ACS-134-V-Col7a] Length = 399 Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 94/341 (27%), Positives = 156/341 (45%), Gaps = 42/341 (12%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 ++H MY F Q V + GH G + +++E +A S+ +E Sbjct: 86 MLHHLGDMYHFDIQDDQGVVTVTGHSGAKEHRHVVVVEPKMA------------SSTSLE 133 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 V TVV +G +++ + V L+ T + G N S + + QV L+ Sbjct: 134 SVIKTVVPNGKFAVHKETNQIV-LNVTGDEEKGVNSIIQSVDRDM---------KQVRLE 183 Query: 200 VTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVLDRFS 255 TI + K+ GF+ S +TG + S+ A FG E F VK L Sbjct: 184 ATIMAMEHSYTKETGFRWSWLSLTGHGKDKTNSYGAISFGKAPDGEAYKFFVKPELS--- 240 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVTTHDYG 313 LE + +A P++ A++G++A G + + +++S+ S+ + G Sbjct: 241 ------LLETSGKAVVIATPSIMALNGEAAHILIGERIPVIEESISNGERKRSIHYEEVG 294 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLA 371 + L +TP V G I I+ EVS P++ +M SY++ R+A T V L G +V+ Sbjct: 295 IKLDYTPVVTKNGTIDTSIRAEVSSPIM---VSEMKSYKITTRQAQTRVRLQPGEVLVIG 351 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 GL+ + Q+ E IP+L IP+LG LFR+SR ++ E+ I Sbjct: 352 GLMDNRDQKQIEKIPILGDIPLLGKLFRHSRKTKDSVEMVI 392 >gi|311277674|ref|YP_003939905.1| type IV pilus secretin PilQ [Enterobacter cloacae SCF1] gi|308746869|gb|ADO46621.1| type IV pilus secretin PilQ [Enterobacter cloacae SCF1] Length = 412 Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + S P + GKF + D SV R Sbjct: 180 QVELAAHIVTMNEKSLRELGVKWTLADADSPPGR-------GKFTTLSSDLSVTDATSRA 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F E L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLEFELSALEQQQQLEIIASPRLLASHLQPASIKQGSEIPYQVSSGDSGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL R+ L+++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLDDRRVRLKLRISENMPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++GIPLL IP LG LFR+ + E E+ + TP ++ Sbjct: 353 KSGETLALGGIFSQKNKSARDGIPLLGDIPWLGQLFRHDGKDHERRELVVFITPRII 409 >gi|296158514|ref|ZP_06841344.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] gi|295891082|gb|EFG70870.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] Length = 590 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 93/355 (26%), Positives = 161/355 (45%), Gaps = 44/355 (12%) Query: 89 LFGKNVGQANVILIG-HDGKQMLNLDILIERDIAHLEMTLRRFIADSN------------ 135 L NV +++L+G DG + +L + ++ IA L+ T+R A+ N Sbjct: 74 LLTANVVDGSLMLLGEQDG--ITSLVVWNDKGIA-LQTTVRIAKAEVNASLEQLRAVLKS 130 Query: 136 ---IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 +R++ + ++VL G++ +G + A K V++ + Sbjct: 131 VAGLRIDAIGSSIVLSGVIHR---------------DMAGIVKAATQDMKNVVDTTTVDE 175 Query: 193 EDQ----VTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 D V KV I EV R + +G + + G G + S A K V+ G + Sbjct: 176 GDALRKTVHFKVQIMEVTRTGQRNLGIAWDSAFKGPQIGGAASVATG-AAKAVTAGTSYF 234 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + G+ + + + A+E A LA P L SG +ASF +GGQ + S + G TS Sbjct: 235 LAGIASNITSQ-INFAVENGDAY-VLAAPELNTKSGGTASFLAGGQ-VPIPQSGALGTTS 291 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + DYG+ L P V + I + TE+S+ V MP + R + + + +G Sbjct: 292 IEYKDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYAGMPGFLTRNTSSDISMRAGE 351 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 T+ ++GL+ D G+P LS++PI+G LFR+ F +++++ I TP + P Sbjct: 352 TLAISGLVSADAANGSNGMPFLSQVPIIGQLFRSDSFRAKKSDLVIFVTPVISDP 406 >gi|110632479|ref|YP_672687.1| Flp pilus assembly protein secretin CpaC-like [Mesorhizobium sp. BNC1] gi|110283463|gb|ABG61522.1| Flp pilus assembly protein secretin CpaC-like protein [Chelativorans sp. BNC1] Length = 473 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 106/422 (25%), Positives = 189/422 (44%), Gaps = 49/422 (11%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G+++ I + K + L + + + V+DPT AD+ +++GK+ G+ V + G Sbjct: 82 GQRLIIEIGKGLQLSGTENAESLFVADPTIADIKESPGEAHFIYGKSAGETTVTGVDLGG 141 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + D+++ ++ ++ L + + I + +V G V Q A+E E Sbjct: 142 RTLFQYDMVVIYNLDEMQRMLSQRFPAARITIRSARGSVYATGTVPDQQTYDAAIESLEK 201 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 + +S ++N + +A + L + EV RD L+ G + S+ P Sbjct: 202 SIPES-----------VLINEIAVAESPIIRLDIKFMEVSRDRLETYG----VNWSALSP 246 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S + GD +G D F +L L+ A L++ TLT I + AS Sbjct: 247 SNHY----------RTGDIRGRG-HDVNKFMKLL--LDNGVAT-ILSDTTLTTIGRKKAS 292 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEP--VI 341 F +G + T S + GA S DY G + FTP +L G++ L I+ E+SEP + Sbjct: 293 FMAGEEIAIPTHSVNNGAASFGV-DYKFVGFNIGFTPQLLPGGKVSLAIEAEISEPRQTV 351 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI----QQLKEGIPLLSKIPILGAL 397 ++G +P RK +T V+L SG + +LAGL + D Q + ++ + +L +L Sbjct: 352 QFSSGPVPYVAARKLNTNVDLHSGESFILAGLSRMDTTGAHDQPRRNWGVVGE--VLRSL 409 Query: 398 FRNSRFNREETEIFIAATPFLV---KPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 + + +I + TP+ KP A + L R + + + + +K F R IY Sbjct: 410 AGHGSVSAHNRDIAVVVTPYFGASDKPSAADITGLQRSNIEFILSNKSKPFSSAR---IY 466 Query: 453 GP 454 GP Sbjct: 467 GP 468 >gi|323142233|ref|ZP_08077067.1| bacterial type II/III secretion system short domain protein [Phascolarctobacterium sp. YIT 12067] gi|322413296|gb|EFY04181.1| bacterial type II/III secretion system short domain protein [Phascolarctobacterium sp. YIT 12067] Length = 364 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 127/249 (51%), Gaps = 22/249 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-----TGSSSGPSKSFAADFGG 236 ++++ L+IA QVTL+ I V R+ K +G + + S ++++ G Sbjct: 104 RQLLPKLDIATR-QVTLEAKIIAVSREDSKNMGVRWDWDTIPQRAQETNNGDSDSSNYDG 162 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 F G F+ F F L+AL + R LA P + I G+ AS G + Sbjct: 163 SFKFWRG-FA-------FRFNATLNALINSGKARILATPRIITIPGKEASIFIGDHIPVQ 214 Query: 297 TVS-SSTGATSVTTH-DYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAGDMPSYRV 353 T S+G+ + T + D G+ L + P + G+ + + TEVS PV+ ++ +YR+ Sbjct: 215 TEKHDSSGSYTATEYLDAGIKLQYAPIISEDGKMVTASVHTEVSTPVL---ISELKNYRI 271 Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R ADT V + SG T+V+ GL+ ++ Q+ + +P LSKIP+LG LF+N + +TE+ Sbjct: 272 TSRTADTNVRMYSGETLVIGGLISEEQQRTMQKVPFLSKIPLLGELFKNRSRSHNKTEVL 331 Query: 412 IAATPFLVK 420 + TP + + Sbjct: 332 LLLTPHITE 340 >gi|319788661|ref|YP_004148136.1| type II and III secretion system protein [Pseudoxanthomonas suwonensis 11-1] gi|317467173|gb|ADV28905.1| type II and III secretion system protein [Pseudoxanthomonas suwonensis 11-1] Length = 502 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 99/405 (24%), Positives = 178/405 (43%), Gaps = 49/405 (12%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV-ILIGHDGKQ 108 +++ + + +VP ++ V V D V + G G+ NV + +G+ ++ Sbjct: 94 LTLHAGEAAVRRVPAALRRVAVGDGEILSVHTVGRNELVFIGTQPGETNVHLWLGNGTQR 153 Query: 109 MLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +++ R + T+R + + ++ V V VV+ G S + L + + Sbjct: 154 TVAVNVTGSRSDG-VAATVRELLGNHPDVAVRAVGSNVVISGGELDAATSAKIAALQKLY 212 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK------VTIAEVRRDILKQIG--FQHSI 219 +LN AG D V ++ VTI E +D ++ +G + +I Sbjct: 213 -----------------PQVLNFAGSDPVGMRPMVRMDVTIMEFNKDAVEDLGIRWDSTI 255 Query: 220 TGSSSGPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHA-----LE 264 +G G + + + + E + G F T + + + Sbjct: 256 SGPIGGLIRDVTTNDYFRVLPEDNRTFDEIREQLPTRLPGPQGYFGIATTIGSQINLLMS 315 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 R A LAEP L+A SG +A+F GG+ + + S G T + +YG+ L+ +P V S Sbjct: 316 RGKAW-VLAEPKLSARSGSNATFLVGGE-VPIVIPSVLGQTQIEYKEYGIRLNISPNVNS 373 Query: 325 PGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + I EVS +P + V +P + R+A+T + + +G TIV++GLL + + Sbjct: 374 AREVATSIMAEVSRIDPSVAVQG--VPGFLTRRAETEINVLAGQTIVISGLLDREAAKSV 431 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 + P+L IPILG LFR+ F TE+ I TP +V P + +L Sbjct: 432 DKFPILGDIPILGRLFRSDGFRGNRTELVIFVTPHIVTPDSPENL 476 >gi|217967423|ref|YP_002352929.1| type II and III secretion system protein [Dictyoglomus turgidum DSM 6724] gi|217336522|gb|ACK42315.1| type II and III secretion system protein [Dictyoglomus turgidum DSM 6724] Length = 1421 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 12/226 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV + V + EV R+ +K IG + S S+G A+ G + D V +++ Sbjct: 1207 QVKIDVQVIEVSRENVKDIGIEWSTGSISTGLQ--ITANLGWQ------DLRV-SIVNPG 1257 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + ALE R LA+P++T +SG++ G + + + G V+ D G+ Sbjct: 1258 QISANIRALETQNKARILAQPSMTTLSGKATRIMIGDRVPLISYDAQ-GNRQVSFVDVGI 1316 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L+ TPTV + G I I +VS I D+P R+A T V L +G T+ L GLL Sbjct: 1317 ILNVTPTVNADGTITANINPQVS--TIQGYVSDVPIISTREAQTIVNLKNGETLALGGLL 1374 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +PLL IPILG LF+ + + E E+ I TP L++ Sbjct: 1375 RQEEIDSMSKVPLLGDIPILGELFKARKTQKVERELIILITPKLIE 1420 >gi|187921506|ref|YP_001890538.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] gi|187719944|gb|ACD21167.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] Length = 561 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 6/228 (2%) Query: 196 VTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 V KV I EV R + +G + + G G + S A K V+ G + + G+ Sbjct: 186 VHFKVQIMEVTRTGQRNLGIAWDSAFKGPQIGGAASVATG-AAKAVTAGTSYFLAGIASN 244 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + + + A+E A LA P L SG +ASF +GG + S + G TSV DYG Sbjct: 245 ITSQ-INFAVENGDAY-VLAAPELNTKSGGTASFLAGGT-VPIPQSGALGTTSVEYRDYG 301 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L P V + I + TE+S+ V G MP + R + + + +G T+ ++GL Sbjct: 302 IKLSIVPVVDANNIISAHLTTEISQIDPSVTYGGMPGFLTRNTTSDISMRAGETLAISGL 361 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + D G+P LSK+PI+G LFR+ F +++++ I TP + P Sbjct: 362 VSADAANDTTGMPFLSKVPIIGQLFRSDAFRAKKSDLVIFVTPVISDP 409 >gi|163856388|ref|YP_001630686.1| putative outer membrane protein [Bordetella petrii DSM 12804] gi|163260116|emb|CAP42417.1| putative outer membrane protein [Bordetella petrii] Length = 458 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 143/316 (45%), Gaps = 33/316 (10%) Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 LI+ ++ TL R I N+R +V VVL G D R L++ + Sbjct: 101 LIQEEV----QTLLRHI--PNVRSSVVGGNVVLEGDDLADDDRARVAALAQRY------- 147 Query: 175 QYANSSSKKVMNLLNIAGEDQ-VTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSF 230 ++++ G D V L V + E+ L++ G Q S G +G Sbjct: 148 -------PRILDFTGQVGWDNMVLLDVQVVEIPSARLREFGLQWDALSQGGLHAGGVWQP 200 Query: 231 AADFGGKFVSEGGDFSVKGV-------LDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + ++ S++G+ ++ + +R A+ LA+P L A SG Sbjct: 201 GSSLQLADAAQPPALSMQGMGAAGYFGVNALLSARLAALAQRGEAV-MLAQPQLLARSGT 259 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +ASF +GG+ Y T + + G +S YGV L+ TP + G I RI+ E S + Sbjct: 260 TASFLAGGEVPYST-TDAQGNSSTEFKPYGVSLNITPRIDRNGAIRSRIEVEASSIDTSL 318 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + P+ R R+A T + SG T+VL G L + + G+P+L IP+LGALF + R Sbjct: 319 SVAGGPALRTRRAVTEFNVRSGQTLVLGGFLSRERSHERSGLPVLQDIPLLGALFSSRRD 378 Query: 404 NREETEIFIAATPFLV 419 +ETE+ I TP +V Sbjct: 379 QHKETELAIFVTPRIV 394 >gi|56460012|ref|YP_155293.1| Flp pilus assembly protein CpaC [Idiomarina loihiensis L2TR] gi|56179022|gb|AAV81744.1| possible Flp pilus assembly protein CpaC [Idiomarina loihiensis L2TR] Length = 404 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 160/355 (45%), Gaps = 44/355 (12%) Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 D+L+SD + DV V L G VG+A++ L + + L I++ A L+++L Sbjct: 49 DILISDESVVDVHVLDNSRAILRGVGVGKADIWLKSEE--VLKELKIMV---TASLKLSL 103 Query: 128 RRFI-----ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + A+ ++ S VL G V S+R E E + + + Sbjct: 104 EGRLEAISEAEQSLNKTEKSGLTVLSGKV-----SKRNYEELEKI----------SENHE 148 Query: 183 KVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 +++NL E+ +TL+V I E +R L+ +G + G++SGP+ F++ G F Sbjct: 149 EILNLTESFQEEPPMLTLRVNILETKRQYLEDLGIRWQ--GTTSGPT--FSSSLSGLFEW 204 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + + L ++R + LA P L+ SG+ A+F +GG+ V + Sbjct: 205 DA------------EINSQLMLMQRRGLAKLLANPVLSTQSGEKATFLAGGELPIPQVVA 252 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G VT +YG+ L P VL RI ++ E+S V+ +P R+ ++ Sbjct: 253 Q-GMQDVTFREYGIRLVIQPVVLDDNRIKTQLHAELSNIDPAVSVSGVPGILSRRTESVF 311 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 G T+VL+GLL D + IP L +PIL FR+ + + TE+ I T Sbjct: 312 LSNDGDTLVLSGLLSTDESAQDDQIPGLGSLPILENAFRSQQNREQTTELIIMVT 366 >gi|323529159|ref|YP_004231311.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] gi|323386161|gb|ADX58251.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] Length = 597 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 97/347 (27%), Positives = 168/347 (48%), Gaps = 28/347 (8%) Query: 89 LFGKNVGQANVILIG-HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 L NV N++L+G DG M +L + E+ IA L+ T+R A+ N ++ L Sbjct: 77 LITANVVDGNLMLLGEQDG--MTSLVVWNEKGIA-LQTTVRIAKAEVNASLQQ------L 127 Query: 148 HGMVRTIQDSQRAVELSETFLSQS-GRNQYA--NSSSKKVMNLLNIAGEDQ-------VT 197 +++++ Q S LS R+ A S+++ + N+++ D+ V Sbjct: 128 RAVLKSVSGLQIDAIGSNIVLSGVVHRDMVAVIKSATQDMKNVIDTTTVDEGEALRKTVH 187 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLDRF 254 KV I EV R+ +++G + + GP + A K V+ G + + G+ Sbjct: 188 FKVQIMEVTRNTQRKLGI--AWDSAFRGPQIGGAASVASGAAKAVTAGTSYFLAGIASNI 245 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 S + + A+ A LA P L SG +ASF +GGQ + S + G T+V DYGV Sbjct: 246 SSQ-INFAVNNGDAF-ILAAPELNTKSGGTASFLAGGQ-VPIPQSGALGTTNVMYKDYGV 302 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L P V + G I + TE+S+ V+ G +P + R + + + +G T+ ++GL+ Sbjct: 303 KLSINPVVDANGIISAHLTTEISQIDPTVSYGGLPGFLTRSTSSDISMRTGETLAISGLI 362 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D +G+P L +IP++G LFR+ F +++++ I TP + P Sbjct: 363 SADSVNDSDGMPFLGQIPVIGQLFRSDSFRAKKSDLVIFVTPLISDP 409 >gi|304311185|ref|YP_003810783.1| Probable outer membrane channel protein [gamma proteobacterium HdN1] gi|301796918|emb|CBL45131.1| Probable outer membrane channel protein [gamma proteobacterium HdN1] Length = 470 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 116/249 (46%), Gaps = 18/249 (7%) Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 L N+ V L V + EVR+ LK++G Q +++GP+ F G E D S Sbjct: 196 LPNVKLAAMVMLDVHVVEVRKQDLKKLGVQWD--SATAGPAYGVLGQFRGAGNFEK-DTS 252 Query: 247 VKGVL---DR-----------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 V G L +R S + L+ L+ LA+P L SG ASF +GG+ Sbjct: 253 VFGFLMTENRSPIKVGNGYIGTSIGSKLNFLQSNGVAHVLAQPKLVTRSGSEASFLAGGE 312 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 TV+ ++ GV+L +P G I I EVS+ V +P + Sbjct: 313 IPIPTVTKDNQINTIFKQ-VGVILKISPKADPDGFIETAINVEVSQVDASVQVLGIPGFI 371 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 RK + + SG T+ ++G+L ++ + + +P L IPILG LF++ F + TE+ I Sbjct: 372 TRKTKMEMNVQSGQTMAISGMLSEESSKAIDKMPGLGSIPILGELFKSRDFRQNTTELMI 431 Query: 413 AATPFLVKP 421 TP+LV P Sbjct: 432 FVTPYLVDP 440 >gi|157376152|ref|YP_001474752.1| Type II secretory pathway component PulD-like protein [Shewanella sediminis HAW-EB3] gi|157318526|gb|ABV37624.1| Type II secretory pathway component PulD-like protein [Shewanella sediminis HAW-EB3] Length = 696 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 118/235 (50%), Gaps = 19/235 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSE--GGDFSVKGVL 251 QV L VTIAEV+ + GF+ +++ G+ SG +K GG + E GG FS K Sbjct: 450 QVLLSVTIAEVKLTGEFKRGFEFALSSGNFSGSTK------GGLGLDEIVGGTFSWKSGA 503 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSSTGATS 306 + E + +E + + L++P+L G A+ G + + S + Sbjct: 504 N----EIIGKFVEENSQVNILSKPSLLVRDGTEANINVGDKIPVSSGSSSSGSGEVVTEN 559 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSG 365 +T + G+ L TPTV + G + + I E+S V+G V G P++ R T V +G Sbjct: 560 ITYRETGIKLTVTPTVNAQGVVIMEINQEISNQVVGPVGKGGNPTFFDRSIKTEVVADTG 619 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 TI+L GL+ DD +G+P L IP++GALF + N +TE+ I TP +V+ Sbjct: 620 QTILLGGLISDDTTNSNKGVPYLKSIPLIGALFESDSKNNTKTELVIMVTPKIVE 674 >gi|311105392|ref|YP_003978245.1| type II and III secretion system family protein 1 [Achromobacter xylosoxidans A8] gi|310760081|gb|ADP15530.1| bacterial type II and III secretion system family protein 1 [Achromobacter xylosoxidans A8] Length = 456 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 118/253 (46%), Gaps = 24/253 (9%) Query: 184 VMNLLNIAGEDQ-VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 V++ G D+ V L V + E+ L+ +G + S G + A D G Sbjct: 147 VLDFTGQVGWDRMVQLDVQVVEIPTSKLRDLGVRWDGM-SQGGINAGLAWDAGSRGRVSR 205 Query: 236 ---------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 G+ S G F V +L + + L ++ LA+P L A SG SA+ Sbjct: 206 PGEEIIETMGRVSSPAGYFGVNALLS-----SRIAMLAQSGEAVMLAQPQLLARSGASAT 260 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 F +GG+ Y + + + G ++ YGV+L TP V G I I+ E S ++ Sbjct: 261 FLAGGEVPYSS-TDTRGNSTTLFKPYGVMLRITPRVDRNGIIRSLIEVEASSVDNALSVP 319 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P+ R R+A T + SG T+V+ G L + + +G+P L IP+LGALF + R+ Sbjct: 320 GGPALRTRRASTEFNVRSGDTLVIGGFLSRERDEASDGLPWLKDIPVLGALFSSRRYQLR 379 Query: 407 ETEIFIAATPFLV 419 ETE+ I TP L+ Sbjct: 380 ETELAIFVTPKLI 392 >gi|303231123|ref|ZP_07317863.1| bacterial type II and III secretion system protein [Veillonella atypica ACS-049-V-Sch6] gi|302514254|gb|EFL56256.1| bacterial type II and III secretion system protein [Veillonella atypica ACS-049-V-Sch6] Length = 399 Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 44/346 (12%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 ++H MY F Q V + G G + +++E +A S+ +E Sbjct: 86 MLHHLGDMYHFDIQDNQGVVTVKGDSGTKEHRHVVVVEPKVA------------SSTSLE 133 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 V TVV +G +++ + V L+ T + G N S + + QV L+ Sbjct: 134 SVIKTVVPNGKFAVHKETNQIV-LNVTGDEEKGVNSIIQSVDRDM---------KQVRLE 183 Query: 200 VTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVLDRFS 255 TI + K+ GF+ S +TG + + S+ A FG E F VK L Sbjct: 184 ATIMAMEHSYTKETGFRWSWLSLTGHGNDKTNSYGAITFGKAPDREAYKFFVKPELS--- 240 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVTTHDYG 313 LE + +A P++ A++G++A G + + +++S+ S+ + G Sbjct: 241 ------LLETSGKAVVIATPSIVALNGEAAHILIGERIPVIEESISNGERKRSIHYEEVG 294 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLA 371 + L +TP V G I I+ EVS P++ ++ SY++ R+A T V L G +V+ Sbjct: 295 IKLDYTPIVTKNGAIDTSIRAEVSSPIM---VSELKSYKITTRQAQTRVRLQPGEVLVIG 351 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE--IFIAAT 415 GL+ + Q+ E IP+L IP+LG LFR+SR ++ E IF+ AT Sbjct: 352 GLMDNRDQKQIEKIPVLGDIPLLGKLFRHSRKTKDSVEMVIFVKAT 397 >gi|313680282|ref|YP_004058021.1| type II and III secretion system protein [Oceanithermus profundus DSM 14977] gi|313152997|gb|ADR36848.1| type II and III secretion system protein [Oceanithermus profundus DSM 14977] Length = 518 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 18/230 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++V I EV + +++ +G + + S G S D G + F L Sbjct: 290 QVNVQVRIQEVTQTLVRNLGLKWNTI--SGGNIVSSIVDNGLSLI-----FDATRSLASL 342 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + L ALE+ RT+ + +T ++ Q+ SG K V +D GV Sbjct: 343 NIVATLEALEKQGLSRTVNDSNITVLNNQTGFIQSGFTIFVKRVVGD--KVEKVPYDIGV 400 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 ++ TP + + G+I L++++EVS+ PV GD+ +K++TT+ L +G T+V Sbjct: 401 IVRVTPQITADGQIVLKVESEVSDIKERNPV----DGDVDVLSKQKSETTLRLDNGQTVV 456 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L GL+K + +G+P+L IP+LG+LF+ + N E+ E+ I T +V Sbjct: 457 LGGLIKTKRDKTTQGVPVLMHIPVLGSLFKQTTVNNEDNELLIVITANIV 506 >gi|320529858|ref|ZP_08030935.1| type IV pilus secretin PilQ [Selenomonas artemidis F0399] gi|320137876|gb|EFW29781.1| type IV pilus secretin PilQ [Selenomonas artemidis F0399] Length = 426 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 26/237 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------- 247 QV+L+ + V + KQ+G + + PS D GG+ Sbjct: 187 QVSLEARVVSVSKAAAKQLGVDWTWSALPQYPS----VDAGGRVTGRSTGGGRTGTSAPG 242 Query: 248 --------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--KT 297 GV F + + AL + LA P +T + G+ A G + T Sbjct: 243 IIRFGRGPAGVPYEFYYSAAISALITDGKAKMLARPNVTTVQGREALINIGAEVPVPRTT 302 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK-- 355 +S +++ + G++L +TP V + G I R+ TEVS PV ++ +YR +K Sbjct: 303 MSDHVTTSAIDYREAGIILRYTPRVTADGTITARVHTEVSTPVY---VEELKAYRFQKRS 359 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 ADTTV L G T+V+ GL+ D + IP L +P+LGA FR+ R N+ E+E+ I Sbjct: 360 ADTTVRLRDGETMVIGGLIDSDESRSLSKIPFLGDLPVLGAFFRSVRTNKTESELMI 416 >gi|157148976|ref|YP_001456295.1| outer membrane porin HofQ [Citrobacter koseri ATCC BAA-895] gi|157086181|gb|ABV15859.1| hypothetical protein CKO_04814 [Citrobacter koseri ATCC BAA-895] Length = 412 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKG 249 +QV L I + L+++G + ++ + S G S A+D + F++ Sbjct: 179 EQVELAAHIVTINEKSLRELGVKWTLADAQLAGSPGQVTSLASDLSVAAATSRVGFNIGR 238 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + R + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 239 INGRL-LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEF 297 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367 + + + TPTVL GRI L++ + P V+ G++ + ++ DT VE+ SG T Sbjct: 298 KEAVLGMEVTPTVLPKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIDTQVEVKSGET 357 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G+ + K+ +PLL IP LG+LF + E E+ + TP LV Sbjct: 358 LALGGIFSRKNKSAKDSVPLLGDIPWLGSLFSHDGKENERRELVVFITPRLV 409 >gi|313895052|ref|ZP_07828609.1| type IV pilus secretin PilQ [Selenomonas sp. oral taxon 137 str. F0430] gi|312975947|gb|EFR41405.1| type IV pilus secretin PilQ [Selenomonas sp. oral taxon 137 str. F0430] Length = 426 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 26/237 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------- 247 QV+L+ + V + KQ+G + + PS D GG+ Sbjct: 187 QVSLEARVVSVSKAAAKQLGVDWTWSALPQYPS----VDAGGRVTGRSTGGGRTGTSAPG 242 Query: 248 --------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--KT 297 GV F + + AL + LA P +T + G+ A G + T Sbjct: 243 IIRFGRGPAGVPYEFYYSAAISALITDGKAKMLARPNVTTVQGREALINIGAEVPVPRTT 302 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK-- 355 +S +++ + G++L +TP V + G I R+ TEVS PV ++ +YR +K Sbjct: 303 MSDHVTTSAIDYREAGIILRYTPRVTADGTITARVHTEVSTPVY---VEELKAYRFQKRS 359 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 ADTTV L G T+V+ GL+ D + IP L +P+LGA FR+ R N+ E+E+ I Sbjct: 360 ADTTVRLRDGETMVIGGLIDSDESRSLSKIPFLGDLPVLGAFFRSVRTNKTESELMI 416 >gi|10956078|ref|NP_052165.1| exporter protein [Chlorobium limicola] gi|1688247|gb|AAB36938.1| exporter protein [Chlorobium limicola] Length = 461 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 105/446 (23%), Positives = 188/446 (42%), Gaps = 99/446 (22%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++ +G +++ P+ + V V DP AD ++ + +YL GK +G N+++ G Sbjct: 8 RVPLGESRIYRFAQPI--KRVAVGDPQVADYIMMNRSEIYLLGKKLGSTNLVVWDQKG-N 64 Query: 109 MLNLDILIERDIAHLEMTLRR-FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + + + + R L+ L+ F +++I ++ + +VL G V ++ + L + Sbjct: 65 VTSTPVQVSRGTTALQAFLKALFPKENDIHIDALGPALVLSGSVSDALVAESVIRLVTAY 124 Query: 168 ----------------------------LSQSGRNQYANS-------------------- 179 L++S A S Sbjct: 125 FGGSVSKSSPESALIGTDAKALTGVIGELNKSTTASNAESFAFFKKTLMMGDEKGASGSA 184 Query: 180 ---SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFA 231 S++ V+NLL + QV L+V IA+V R L+ +G + +TGS S F Sbjct: 185 GRDSTRGVINLLKVRDPQQVRLEVRIAQVSRSYLESLGLSVTKLTGDLTGSLGKLSTGFV 244 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 +D + +L + ++ + A + + ++ LAEPT+ +SG+ F GG Sbjct: 245 SD------------ATLDLLLKPDYDIKMGAKRKPSLLKILAEPTIVTMSGKEGYFLVGG 292 Query: 292 Q-HLYKTVSSSTGATSVTTHDYGVVLHFTPT----VLSPG---------RIGLR-IQTEV 336 + + V S + T + TPT VL P R+ R + Sbjct: 293 KIYTPSRVESQLDTAKLNTKN-------TPTAWVYVLRPSCWMQAVFHSRLYPRFLNLTR 345 Query: 337 SEPVIGVNAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + ++G+ +R+ A T VE+ G +V+ GL D++ + +PLL +IPIL Sbjct: 346 NHSLLGLQK---IGHRLNSAPVSTAVEMNEGENLVIGGLKLDNLTNAIDSVPLLGEIPIL 402 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 GALFRN+ N E+TE+ + P LVK Sbjct: 403 GALFRNTDKNAEKTELMVIVRPTLVK 428 >gi|146339226|ref|YP_001204274.1| putative general secretion pathway protein D signal peptide [Bradyrhizobium sp. ORS278] gi|146192032|emb|CAL76037.1| Putative general secretion pathway protein D; putative signal peptide [Bradyrhizobium sp. ORS278] Length = 778 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 122/256 (47%), Gaps = 27/256 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGDFSVKGV 250 + QV ++ TIAEV Q G Q I G P D ++ G+ + Sbjct: 495 QRQVAIEATIAEVTLTDDLQFGVQSYIMSRDLGLKPDTGSFGDAASTALATAGNVVLNRA 554 Query: 251 LDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS- 301 + F+F +L AL T ++ L+ P+L I Q A+ G + +T +++ Sbjct: 555 IPGFNFLVGSATTPRLILSALHAVTDVKVLSNPSLVVIDNQVATLQVGNEIPIQTGTATV 614 Query: 302 -TGATSV-TTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------MPS 350 TG +V +T DY G++L P + + G + L ++ E+S + G N G+ P+ Sbjct: 615 LTGNNTVASTTDYRSTGIILRVVPRINANGNVRLDVEQEISNALNGTNGGNGATNSLTPT 674 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 RK ++V + SG T++LAGL+ D + + GIP + +IP +G LF S N + TE+ Sbjct: 675 VATRKLRSSVAVASGQTVLLAGLISDTQNRTRNGIPGIDQIPGIGDLFSQSGNNVQRTEL 734 Query: 411 FIAATPFLVKPVAMRD 426 I ++P +RD Sbjct: 735 II-----FIRPQIIRD 745 >gi|291280100|ref|YP_003496935.1| hypothetical protein DEFDS_1724 [Deferribacter desulfuricans SSM1] gi|290754802|dbj|BAI81179.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 796 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 6/173 (3%) Query: 249 GVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 G L R F+ + L ALE +RT++ P +T + Q A SGG + +T V Sbjct: 629 GNLSRTFNLDIALSALESQNKVRTISSPRITTLDNQEAEIKSGGTAIIVPTGDNTETEEV 688 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D G+ L P + S I L I+ E S +G + + +KA T V L +G T Sbjct: 689 ---DVGIKLKIKPHITSNNMIYLDIEVEKSS--LGAVTANTATTEEKKAKTQVLLANGET 743 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 V+ G+ +D+ ++ +G+P LSKIPILGALFR + E+ + TP +V+ Sbjct: 744 TVIGGIYEDEKSEVNQGVPFLSKIPILGALFRAKNNTVTKRELLVFITPKIVE 796 >gi|206901782|ref|YP_002250755.1| bacterial type II and III secretion system protein [Dictyoglomus thermophilum H-6-12] gi|206740885|gb|ACI19943.1| bacterial type II and III secretion system protein [Dictyoglomus thermophilum H-6-12] Length = 1256 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 12/226 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV + V + EV R+ +K IG + S+G A+ G + D + +++ Sbjct: 1043 QVKIDVQVIEVSRENIKDIGIEWGTGSISTGLQ--ITANVGWQ------DLRI-SIINPG 1093 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + ALE + LA+P++T +SG+S G + + + G V+ D G+ Sbjct: 1094 QISANIKALESQNKAKILAQPSMTTVSGKSTRIMIGDRVPLISYDAQ-GNRQVSFVDVGI 1152 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L+ TPTV + G I + +VS I D+P R+A T V L +G T+ L GLL Sbjct: 1153 ILNVTPTVNADGTITANLNPQVS--TIQGYVQDVPIISTREAQTIVNLKNGETLALGGLL 1210 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + + +PLL IPILG LF+ + + E E+ I TP +++ Sbjct: 1211 RQEEIESMSKVPLLGDIPILGELFKARKIQKVERELIILITPKIIE 1256 >gi|85711968|ref|ZP_01043022.1| possible Flp pilus assembly protein CpaC [Idiomarina baltica OS145] gi|85694154|gb|EAQ32098.1| possible Flp pilus assembly protein CpaC [Idiomarina baltica OS145] Length = 393 Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 115/251 (45%), Gaps = 25/251 (9%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 LKVTI E+++ ++Q+G Q GP+ + G ++ Sbjct: 158 LKVTILEIKQQFVQQLGIQWD--SQIDGPNWQWGRQGGVQWSP--------------LLM 201 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 + + LE+ A + LA P LT SGQ ASF +GG+ V G V+ +YGV L Sbjct: 202 SNIQLLEQQGAAKLLATPVLTTQSGQPASFLAGGEIPIPQVVGQ-GMQDVSFREYGVRLT 260 Query: 318 FTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PTV + +I ++ EVS +P + VN +P R+ + + G T+VL+GLL Sbjct: 261 IEPTVSAESKITAKLSAEVSNIDPAVEVNG--VPGILTRRTEAVLSSRHGETVVLSGLLS 318 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 D + + G+P L ++PI G +F++ + TE+ I F+ + D R Sbjct: 319 TDSSESEAGLPGLKQLPIAGEVFKHRGQRNQHTELLI----FVTSEIVAYDQQRHQLKQR 374 Query: 436 VEDDAKAFFFN 446 + AK ++ Sbjct: 375 HQQQAKEWYLQ 385 >gi|186473164|ref|YP_001860506.1| type II and III secretion system protein [Burkholderia phymatum STM815] gi|184195496|gb|ACC73460.1| type II and III secretion system protein [Burkholderia phymatum STM815] Length = 451 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 108/224 (48%), Gaps = 6/224 (2%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 KV I EV R K IG +GP S F G + G +F + G+ + Sbjct: 187 FKVQIMEVTRTGQKDIGIAWD--SQFAGPQVS-GQGFIGSGAASGANFFLAGIASTIT-S 242 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 + A+ A LA P L SG +ASF +GG+ + + + G T V YG+ L+ Sbjct: 243 RINFAINNGDAF-ILAAPELNTKSGGTASFLAGGE-VPIPKAGALGTTDVEYKPYGIRLN 300 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P V + I +QTE+S+ V+ G P + R A + + L +G TI ++GL+ D Sbjct: 301 IRPVVDANDIISATVQTEISQIDPSVSYGGFPGFLTRSASSDISLRAGETIAISGLVSAD 360 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G+P +++PI+G LFR+ F + +++ I TP + +P Sbjct: 361 ALNGSAGMPFFARLPIIGQLFRSDSFRAKNSDLVIFVTPLISEP 404 >gi|302326451|gb|ADL25652.1| putative bacterial type II/III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 585 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 106/230 (46%), Gaps = 13/230 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QVTL I E R+ IG + T G ++ F DF GK +S+ G F G+L Sbjct: 338 QVTLACVIVEFRKGRSFAIGVRSGATRNVGERDIQARGFF-DFLGKDISKSGAFGKIGIL 396 Query: 252 -DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 DRF E L ++E + LA P +T ++G A Y S +T + Sbjct: 397 PDRFELE--LSSMEENNEAKVLARPRVTTLNGNKAELNVTNTVYYLVSQVSADGYPITDY 454 Query: 311 ---DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGG 366 + G+ L TPT+ G I L + E+ G + GD P R TTV L G Sbjct: 455 RSFNDGISLELTPTMTQDGLITLSVSPEIK--TAGRSTGDGPRDISSRNMKTTVVLRDGE 512 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T+ L GL++ + +++ +P L IPILG LF + +E+E+ I TP Sbjct: 513 TLCLGGLIRKNKTEVRSAVPFLGSIPILGRLFSYTSEEEDESELAIFITP 562 >gi|261414950|ref|YP_003248633.1| type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371406|gb|ACX74151.1| type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 603 Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 106/230 (46%), Gaps = 13/230 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QVTL I E R+ IG + T G ++ F DF GK +S+ G F G+L Sbjct: 356 QVTLACVIVEFRKGRSFAIGVRSGATRNVGERDIQARGFF-DFLGKDISKSGAFGKIGIL 414 Query: 252 -DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 DRF E L ++E + LA P +T ++G A Y S +T + Sbjct: 415 PDRFELE--LSSMEENNEAKVLARPRVTTLNGNKAELNVTNTVYYLVSQVSADGYPITDY 472 Query: 311 ---DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGG 366 + G+ L TPT+ G I L + E+ G + GD P R TTV L G Sbjct: 473 RSFNDGISLELTPTMTQDGLITLSVSPEIK--TAGRSTGDGPRDISSRNMKTTVVLRDGE 530 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T+ L GL++ + +++ +P L IPILG LF + +E+E+ I TP Sbjct: 531 TLCLGGLIRKNKTEVRSAVPFLGSIPILGRLFSYTSEEEDESELAIFITP 580 >gi|327399337|ref|YP_004340206.1| type IV pilus secretin PilQ [Hippea maritima DSM 10411] gi|327181966|gb|AEA34147.1| type IV pilus secretin PilQ [Hippea maritima DSM 10411] Length = 704 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 73/282 (25%), Positives = 127/282 (45%), Gaps = 36/282 (12%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 R ++ R VE+S++F Q G N ++ + N G Sbjct: 445 RAVEIDARIVEISKSFERQLGIQWGGNFFNQNINNSKTFIG------------------- 485 Query: 212 QIGFQHSITGSSSG--PSKSFAADFGGKFV-----------SEGGDFSVKGVLDRFSFET 258 +G S SSG PS+SF+ D FV + ++ VL ++ + Sbjct: 486 -VGGSSSPVDVSSGLPPSESFSND---NFVVNLPAGLSDAPTSTVRLAIGNVLANYNLDL 541 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 L E + L+ P + + + A +SG + Y+ + ++GATSV+ + + L Sbjct: 542 KLTMGEIEGYSKVLSTPKVITLDNEPAKISSGQEIPYQESAGASGATSVSFKEATLSLEV 601 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 TP + ++ L+++ + P + G P + D+TV L +G TIV+ GL++ Sbjct: 602 TPHITRNDQVILKLKIKKDSPDYSHSVGGEPPINTNEVDSTVILSNGQTIVIGGLMQSTT 661 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 Q+ G+P L +IP+LG LF+ R +TE++I TP +VK Sbjct: 662 QKTVSGVPGLMRIPLLGWLFKTKRIYNPKTELYIFVTPHIVK 703 >gi|304438627|ref|ZP_07398566.1| type II and III secretion system protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368465|gb|EFM22151.1| type II and III secretion system protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 428 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 24/237 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------- 247 QV+L+ + V + K++G S + P S D G + G + + Sbjct: 188 QVSLEARVVAVSKRAAKELGIDWSWSSLPQYPDVS--RDASGSWHVNGRNAGMDGTSAPG 245 Query: 248 --------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YKT 297 +G+ F + + AL + LA P +T + G+ A G + T Sbjct: 246 IIRFGRGPEGMPYEFYYTAAIRALVSEGKAKMLARPNVTTVQGREALINIGAEVPVPVVT 305 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK-- 355 S++ T + + G++L +TP V + G I R+ TEVS PV D+ +YR +K Sbjct: 306 TSNNVTTTGIEYREAGIILRYTPRVTADGNIVARVHTEVSTPVF---VDDLKAYRFQKRS 362 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 ADTTV L +G T+V+ GL+ D + IP L +P+LGA FR R +R ETE+ I Sbjct: 363 ADTTVRLKNGETMVIGGLIDSDESRTLAKIPFLGDLPLLGAFFRTVRTSRNETELMI 419 >gi|226193920|ref|ZP_03789521.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9] gi|225933865|gb|EEH29851.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9] Length = 566 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 136/264 (51%), Gaps = 9/264 (3%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + + V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNI 273 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S+ ++ G ++ + A ++ LAEP L Sbjct: 274 QGGFG----SWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSSTG 303 ISGQ A+F +GG+ ++ V S+G Sbjct: 330 ISGQEATFLAGGK-IFIPVPQSSG 352 >gi|289547821|ref|YP_003472809.1| type II and III secretion system protein [Thermocrinis albus DSM 14484] gi|289181438|gb|ADC88682.1| type II and III secretion system protein [Thermocrinis albus DSM 14484] Length = 575 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 33/251 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------------- 235 +V+++ I E+R + L+++G ++ SS+ ++++ G Sbjct: 324 RVSIEARIVEIREEALRELGINWNMLLSSARLPEAWSGGVGSNIGIGSPPTPGNLFLTPP 383 Query: 236 ----GKFVSEGGDFSV---KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G + GG ++ KG+++ + + ALER ++LA+PT+ AI+GQ A+ Sbjct: 384 YLQPGLSPNPGGILTLTYQKGIINALNLR--ISALERVNLAKSLAKPTIVAINGQKATIK 441 Query: 289 SGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 G Q Y T + G T+V D + L TP V GRI L + ++ +GV Sbjct: 442 QGVQVPYLTAAVGAGGTAVPNIQFKDVVLQLDVTPIVSPDGRILLDLS--LTRDTLGVQT 499 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P+ ++ T V + +G T+V+ G++ + EGIP ++P+L LF R N+ Sbjct: 500 PQGPAINKKEVRTKVIVENGQTLVIGGVIDNQSYTTNEGIPGFVRVPLLKYLFGQERLNK 559 Query: 406 EETEIFIAATP 416 +TE+ I TP Sbjct: 560 SDTELLIFITP 570 >gi|283787974|ref|YP_003367839.1| fimbrial protein HofQ [Citrobacter rodentium ICC168] gi|282951428|emb|CBG91127.1| putative fimbrial protein HofQ [Citrobacter rodentium ICC168] Length = 412 Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + ++ + S G + +D + F++ G Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLAEAQSTGAVGDVSTLGSDLSVAAATTRVGFNI-GR 238 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +D + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 239 IDGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 298 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP VL GRI L++ + P V+ G++ + ++ DT VE+ SG T+ Sbjct: 299 EAVLGMEVTPVVLQKGRIRLKLHISQNMPGQVLQQADGEVLAIDKQEIDTQVEVKSGETL 358 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ ++ +E +PLL IP LG LFR+ E E+ + TP LV Sbjct: 359 ALGGIFSRKNKRGQESVPLLGDIPWLGQLFRHDGKENERRELVVFITPRLV 409 >gi|156936449|ref|YP_001440365.1| outer membrane porin HofQ [Cronobacter sakazakii ATCC BAA-894] gi|156534703|gb|ABU79529.1| hypothetical protein ESA_04350 [Cronobacter sakazakii ATCC BAA-894] Length = 390 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 9/232 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-----SFAADFGGKFVSEGGDFSVKG 249 QV L I + + L+++G + S T + GP+ + +AD + F++ G Sbjct: 158 QVELAAHIVTINQQSLRELGVKWS-TADADGPTTLYHPTTISADLAVANATTRLGFNI-G 215 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 +D E L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 216 RIDGRMLEFELSALEQKQKVEIIASPRLLAAHQQPASIKQGSEIPYQVSSGESGATSVEF 275 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGT 367 + + + TPT+ GRI L+++ + P + D + K +T VE+ G T Sbjct: 276 KEAVLGMEVTPTIGQDGRIKLKLRISQNMPGQALQQADGEVLAIDKQEIETQVEVKDGET 335 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G+ + + E +P+L IP+ G+LFR+ + E+ E+ + TP ++ Sbjct: 336 LALGGIFQQKNKAGNEQVPVLGNIPLFGSLFRHDGKDNEKRELVVFITPRII 387 >gi|217977094|ref|YP_002361241.1| general secretion pathway protein D [Methylocella silvestris BL2] gi|217502470|gb|ACK49879.1| general secretion pathway protein D [Methylocella silvestris BL2] Length = 805 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 32/279 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAAD--FGGKFVSEGGDFSVKG 249 QV + +TIAEV + G Q + GSS+ G + F + G GG S G Sbjct: 523 QVAIDLTIAEVTLNDTLNYGVQFFL-GSSNLGLGANNGFVTNTAAGVPLAQTGGVASAAG 581 Query: 250 VLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS- 300 L F+ +++AL + T ++ L+ P+L + Q A+ G + +T S+ Sbjct: 582 TLPGFNLTIGNALSPRAIINALHQYTDVKVLSNPSLVVVDNQVATLQVGDEIPIQTGSAT 641 Query: 301 --STGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 S V T DY G++L P V G + L ++ E+S G P++ RK Sbjct: 642 VLSANNAVVNTIDYKNTGIILRVQPRVNFNGNVSLDVEQEISNQAGTSALG--PTFSQRK 699 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR--EETEIFIA 413 +++ + SG T++LAGL+ D + K GIP+ +IP+LG LF NS NR TE+ I Sbjct: 700 VKSSILVASGQTVLLAGLISDGVNGTKAGIPVADQIPVLGNLFNNSS-NRLVSRTELII- 757 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 ++P +RD D + E+ N+V IY Sbjct: 758 ----FIRPQIIRD--GVDASFVAEELRSKLRGNKVGDIY 790 >gi|302392509|ref|YP_003828329.1| type II and III secretion system protein [Acetohalobium arabaticum DSM 5501] gi|302204586|gb|ADL13264.1| type II and III secretion system protein [Acetohalobium arabaticum DSM 5501] Length = 428 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 19/245 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAA-DFGGKFVSEGGDFSVKGV 250 QV ++ I +V D LK +G S G + G S + GG + E GD S Sbjct: 182 QVIIEARIEDVSYDKLKDLGINWSFAKNRGDNKGEQISDTDIENGGSGILEIGDVS---- 237 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATS--V 307 ++ ++ AL+ TLA P + I G+ A G + + K+ G TS + Sbjct: 238 ---MNYTAIIRALKSTDDSTTLANPRIATIDGKEAVINMGQEVPILKSEKDDDGQTSTNI 294 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + D G VL TP + + +I + I+ EVSE + G P +K +T + + +G T Sbjct: 295 SFRDVGTVLKITPRI-NNNQIRMNIKPEVSE--VDHWEGSYPVINTKKVETNIIVKNGET 351 Query: 368 IVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IV+ GL+ + +I QL + +PL +PI G LF++ R +E+ E+ I TP +++ D Sbjct: 352 IVIGGLISEKEINQLSK-VPLFGDVPIFGELFKSRRTTKEKRELVIFITPRIIEDNGQAD 410 Query: 427 LSRPD 431 D Sbjct: 411 EEEKD 415 >gi|238019550|ref|ZP_04599976.1| hypothetical protein VEIDISOL_01419 [Veillonella dispar ATCC 17748] gi|237864249|gb|EEP65539.1| hypothetical protein VEIDISOL_01419 [Veillonella dispar ATCC 17748] Length = 421 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 123/240 (51%), Gaps = 20/240 (8%) Query: 182 KKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAADFGG 236 ++V L+N ++ QV L+ TI + + K+ GF+ S +TG + S+ A G Sbjct: 186 RRVETLINAVDKEPKQVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTNSYGAVTFG 245 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 K + GG+ +F + L +E + +A+P++ A++G++A G + Sbjct: 246 K--TPGGEAY------KFFVKPELSLMESSGKAVLIAKPSIMALNGETAHILIGERIPVI 297 Query: 297 TVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV- 353 S G +T + G+ L++TP + + G + +I EVS P++ +M +Y++ Sbjct: 298 EESEVNGERKRSTRYEEVGIKLNYTPIITADGGVDAKIHAEVSTPIM---VSEMKAYKIS 354 Query: 354 -RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+A T V L G +V+ GL+ + Q + IP+L IP+LG LFR+SR ++ E+ I Sbjct: 355 TRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDSIEMLI 414 >gi|260599692|ref|YP_003212263.1| outer membrane porin HofQ [Cronobacter turicensis z3032] gi|260218869|emb|CBA34224.1| Protein transport protein hofQ [Cronobacter turicensis z3032] Length = 390 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 9/232 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----AADFGGKFVSEGGDFSVKG 249 QV L I + + L+++G + S T + G +K + +AD + F++ G Sbjct: 158 QVELAAHIVTINQQSLRELGVKWS-TADAEGATKLYHPTTVSADLAVANATTRLGFNI-G 215 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 +D E L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 216 RIDGRMLEFELSALEQKQKVEIIASPRLLAAHQQPASIKQGSEIPYQVSSGESGATSVEF 275 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGT 367 + + + TPT+ GRI L+++ + P + D + K + T VE+ G T Sbjct: 276 KEAVLGMEVTPTIGQGGRIRLKLRISQNMPGQALQQADGEVLAIDKQEIETQVEVKDGET 335 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G+ + + E +P+L IP+LG+LFR+ ++E+ E+ + TP ++ Sbjct: 336 LALGGIFQQKNKTGNEQVPVLGNIPLLGSLFRHDGKDKEKRELVVFITPRII 387 >gi|284047888|ref|YP_003398227.1| type II and III secretion system protein [Acidaminococcus fermentans DSM 20731] gi|283952109|gb|ADB46912.1| type II and III secretion system protein [Acidaminococcus fermentans DSM 20731] Length = 405 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 115/232 (49%), Gaps = 18/232 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+TL+ I + +++G Q + G K FGG+ + G + Sbjct: 164 QITLEARILSLGESASRELGLQWDWSALPEG-RKKGEGGFGGR-LHLGHSYGA------- 214 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSSTGATSVTTHD 311 SF+ L AL + + LA P + + G+ AS G H+ + V++ST ++ D Sbjct: 215 SFQARLSALCQEGKAKVLATPRIITLPGREASIFIG-DHIPVVTEKVTNSTTTSTTEYVD 273 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIV 369 G+ L +TP + G I ++ TEVS P + ++ +YR+ R ADT V L T+V Sbjct: 274 AGIRLSYTPYLSQDGLITAKVHTEVSTPTL---IAELKNYRITSRTADTHVRLREKETLV 330 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + GL+ + Q E IPLLSK+P+LG LF+ +R TE+ + TP+L P Sbjct: 331 IGGLISEQEQHRMEAIPLLSKLPLLGELFKFRSRSRNRTEVCMFLTPYLSGP 382 >gi|42524677|ref|NP_970057.1| flp pilus assembly protein [Bdellovibrio bacteriovorus HD100] gi|39576887|emb|CAE78116.1| flp pilus assembly protein [Bdellovibrio bacteriovorus HD100] Length = 433 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 22/225 (9%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + +++T+AE+++D + G + A + K + +G V +R Sbjct: 212 IKVQITVAEIKKDFSLKYGLRP-------------PAGYSAKLMPDG-------VWERDE 251 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 L ALE + LA P + SG+ A F +GG+ K ++ + YG++ Sbjct: 252 LPFNLTALEAQGQGKILASPNILCRSGKEAEFLAGGEFPIKIMNYKM--QDIVWKRYGIL 309 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L P + GR+ + I+TEVS D+P + + +L TI L+GLLK Sbjct: 310 LRVKPKADAAGRMSISIETEVSTVDDSRKVDDVPGILTNRVSSHFDLTRPQTIALSGLLK 369 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + EG+PLLS++P++GALF + F +E+ I P +++ Sbjct: 370 SEDGKSSEGLPLLSRLPVVGALFASKDFKENRSELVIFVRPSILR 414 >gi|313892802|ref|ZP_07826383.1| bacterial type II and III secretion system protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442733|gb|EFR61144.1| bacterial type II and III secretion system protein [Veillonella sp. oral taxon 158 str. F0412] Length = 429 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 20/244 (8%) Query: 178 NSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA 232 N ++V NL+ ++ QV L+ TI + + K+ GF+ S +TG + S+ A Sbjct: 190 NGEKRRVENLVRAIDKEPKQVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGDDKTNSYGA 249 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 GK S G +F + L +E + +A+P++ A++G++A G + Sbjct: 250 VTFGKTPS--------GEAYKFFVKPELSLMESSGKAVLIAKPSIMALNGETAHILIGER 301 Query: 293 HLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 S G +T + G+ L++TP + + G + +I EVS P++ +M + Sbjct: 302 IPVVEESEVNGERKRSTRYEEVGIKLNYTPIITADGGVDAKIHAEVSTPIM---VSEMKA 358 Query: 351 YRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 Y++ R+A T V L G +V+ GL+ + Q + +P+L IP+LG LFR+SR ++ Sbjct: 359 YKISTRQAHTRVRLQQGEVLVIGGLMDNRDQHQIQKVPILGDIPLLGKLFRHSRKTKDSI 418 Query: 409 EIFI 412 E+ + Sbjct: 419 EMLV 422 >gi|313672368|ref|YP_004050479.1| type ii and iii secretion system protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939124|gb|ADR18316.1| type II and III secretion system protein [Calditerrivibrio nitroreducens DSM 19672] Length = 425 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 117/250 (46%), Gaps = 24/250 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGKFV 239 Q+ ++ I ++ K +G Q + G+ + P++++ + V Sbjct: 172 QIMIEAKIVRTTKNAGKDLGIQWGVNVNDRTSKNFPYSVQVGAGADPNRNYIVNLPISDV 231 Query: 240 SEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + G + GV + F L+ALE + + P + ++ Q A SG + Sbjct: 232 ARAGIGAGVGVTLGNFNNTFVLNAKLNALETKGEAKVVHSPKILTMNNQKAKLESGEEIR 291 Query: 295 YKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 ++ +ST T + + VL TP +L+ G I L + E+SE + ++P+ Sbjct: 292 FRETKTSTTTTTQEIEIQKDEAKTVLDITPQILNDGNILLNLAVELSEFDWTKSVDNIPA 351 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 KA+T V L G T+++ GL K+++ + + +PLLSKIP+LGALFRN E E+ Sbjct: 352 KNKNKAETQVILKDGETLIIGGLKKENVFKNEAAVPLLSKIPLLGALFRNKSSGEELNEL 411 Query: 411 FIAATPFLVK 420 I TP +++ Sbjct: 412 LIFVTPKIMR 421 >gi|255658549|ref|ZP_05403958.1| putative type IV pili biogenesis protein PilQ [Mitsuokella multacida DSM 20544] gi|260849353|gb|EEX69360.1| putative type IV pili biogenesis protein PilQ [Mitsuokella multacida DSM 20544] Length = 430 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 7/176 (3%) Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGAT 305 +GV F + + AL + LA P +T + G+ A GG+ T V+++T T Sbjct: 252 EGVPFEFYYSATIQALVTQGKAKMLARPNITTVQGREALINIGGEVPVPTQSVTNNTTTT 311 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELP 363 + T G++L TP + GRI + TEVS P+ D+ +YR R ADTTV L Sbjct: 312 TYTYRQAGIILRCTPRIHEDGRITATVHTEVSSPLY---VEDIKAYRFQNRSADTTVSLR 368 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T+V+ GL+ D + IP L +PILG+ FR+ R +R E+EI I T ++ Sbjct: 369 DGETMVIGGLIGSDESRTLSKIPFLGDLPILGSFFRSVRQSRSESEIMIFLTAHVI 424 >gi|254469140|ref|ZP_05082545.1| general (type II) secretion pathway (GSP) D protein, putative [Pseudovibrio sp. JE062] gi|211960975|gb|EEA96170.1| general (type II) secretion pathway (GSP) D protein, putative [Pseudovibrio sp. JE062] Length = 749 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 23/241 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV---- 250 QV ++ TIAEV + G Q + +FA G V++G K Sbjct: 498 QVVIEATIAEVNINDNLSYGVQWYLA------KGNFAGGIGA--VADGASRPTKAAGGAL 549 Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATS 306 L+ + VL AL+ T ++ ++ P LT + G+ A G Q + + S S+ G + Sbjct: 550 SLNTVGVDVVLKALQNITKVKVISSPYLTVLDGRKARLVIGDQVPFASRSQSSSNDGNVT 609 Query: 307 VTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDM-PSYRVRKADTTV 360 VT D G+VL P + S + L+IQ EVS V G + P+ R ++ + Sbjct: 610 VTNEVDVKDTGIVLQVEPNIRSNNSVLLQIQQEVSNVVQNKTEEGSLTPTIATRTINSDI 669 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFIAATPFLV 419 + SG TI+L GL+++ + + G+P+L KIP+ G LF+ N+ + TE+ + TP +V Sbjct: 670 VVESGRTILLGGLIQERKENGESGVPILRKIPVFGELFKENTTNDTRRTELLVMITPRVV 729 Query: 420 K 420 + Sbjct: 730 R 730 >gi|113867004|ref|YP_725493.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16] gi|113525780|emb|CAJ92125.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16] Length = 478 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 101/393 (25%), Positives = 176/393 (44%), Gaps = 47/393 (11%) Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 +V L+VP ++ V + + V R + L + +G ++I+ G + + Sbjct: 51 EVRALEVPGTIRRVAIGNGALVSSTVVDGR-LLLLAEEIGTTSLIVWNERGVALQGKLRV 109 Query: 116 IERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 D A + LR + +++E+V +VVL G+V D Q V L +T Sbjct: 110 APADTADVAQRLRASLGSVRGLKIEVVGPSVVLSGIV----DPQ-MVPLIKT-------- 156 Query: 175 QYANSSSKKVMNLLNI----AGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSK 228 A S V+NL+ A + V KV I E+ R ++++G +Q S +GP Sbjct: 157 --ATSGLDSVVNLVRADEGDALKKTVHFKVHIMEITRRGMEKLGIAWQQSF----NGPQI 210 Query: 229 SFAAD--FGGKF----VSEGGDFS-----VKGVLDRFS-------FETVLHALERATAIR 270 +FA + G++ ++ F+ V G F F + A+ A Sbjct: 211 AFAGNPVHTGRYRTLPSTDAATFTDTPSQVAGAASGFYLGIATTIFSRINLAISDGDAY- 269 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LA P L + SG A+F +GG+ + + G T V YG+ L+ P V I Sbjct: 270 VLAAPELNSKSGGLATFLAGGEVPIPK-AGAFGTTDVDYKPYGIKLNIRPAVNVDNVIST 328 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++TE+S+ V+ G P++ R+ + + +G T+ ++GL+ D + + +PLL Sbjct: 329 TLETEISQIDPSVSFGGFPAFLTRRTTSETSIRAGETLAISGLVNADASKAVDKVPLLGS 388 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 IPILG LFR+ F ++++ I TP + P + Sbjct: 389 IPILGRLFRSDEFRNNKSDLVIFVTPVVYDPAS 421 >gi|256823530|ref|YP_003147493.1| general secretion pathway protein D [Kangiella koreensis DSM 16069] gi|256797069|gb|ACV27725.1| general secretion pathway protein D [Kangiella koreensis DSM 16069] Length = 708 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 10/184 (5%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----- 306 D FS+ + ALE T TL+ P++T + A F SG Q + S+ G + Sbjct: 471 DGFSWGAFIRALEGVTDSNTLSRPSVTTLDNVEAIFKSG-QEIPIITGSTLGDNNSNPFQ 529 Query: 307 -VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 V D GV+L TP + + L I+ EVS + G D+ + + R+ T+V +P G Sbjct: 530 NVERKDVGVMLKLTPQINEGNYVRLDIEQEVSS-IAGSTNVDVVTNK-REVKTSVLVPDG 587 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-M 424 G +VL GL+ DDIQQ + +P+L IP+LG F++ R + + + I P ++K A + Sbjct: 588 GMVVLGGLIDDDIQQSSQKVPILGDIPVLGHAFKSQRTQKIKRNLMIFIHPTVLKDDAEL 647 Query: 425 RDLS 428 R+LS Sbjct: 648 RELS 651 >gi|87311027|ref|ZP_01093152.1| RhcC2 [Blastopirellula marina DSM 3645] gi|87286317|gb|EAQ78226.1| RhcC2 [Blastopirellula marina DSM 3645] Length = 300 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 5/133 (3%) Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + D + + V+ LE++ A++ LAEPTL +SGQ ASF GG+ + V S+ G+ ++ Sbjct: 116 IADDEALKQVVAKLEKSGALKVLAEPTLMTVSGQPASFHVGGEFPIQ-VPSADGSPAIEF 174 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM--PSYRVRKADTTVELPSG 365 YG +H P VL GRI L ++ +SE P G+ GD+ P+ RVR DT+VE+ G Sbjct: 175 KAYGAEMHVVPVVLGQGRIRLGLRPRISELDPDHGIKLGDLTVPALRVRGVDTSVEMHVG 234 Query: 366 GTIVLAGLLKDDI 378 VLAGL++ + Sbjct: 235 DAFVLAGLVQQRV 247 >gi|148254077|ref|YP_001238662.1| putative general secretion pathway protein D [Bradyrhizobium sp. BTAi1] gi|146406250|gb|ABQ34756.1| Putative general secretion pathway protein D [Bradyrhizobium sp. BTAi1] Length = 780 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 13/186 (6%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDY--- 312 +L AL T ++ L+ P+L I Q+A+ G Q T S++ T T V T DY Sbjct: 578 ILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQVPVSTGSATVLTTNNTVVNTIDYRNT 637 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G++L P V G + L I+ E+S P+ RK + V + SG T++LAG Sbjct: 638 GIILRVAPRVNENGNVRLEIEQEISNVSPQTANSLTPTVAQRKVKSAVAVASGQTVLLAG 697 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L+ + Q + G+P + +IP+LG LF N+ R TE+ I ++P +RD + D Sbjct: 698 LISETHQGTRNGVPGVDQIPVLGDLFSNNDRTRGRTELII-----FIRPQIIRDGT--DA 750 Query: 433 HYSVED 438 HY E+ Sbjct: 751 HYVAEE 756 >gi|309389127|gb|ADO77007.1| type II and III secretion system protein [Halanaerobium praevalens DSM 2228] Length = 629 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 108/235 (45%), Gaps = 18/235 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ + E+ D +++G H+ G + +S G + E D+S Sbjct: 315 QVVIETRVEEISSDFSRELGIDHTDGGIFNIIKESTNNADGESYKIEKLDYS-------- 366 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-- 312 + V AL+ +T +TLA P L ++G+ A+ + + YK V++ + T+ +Y Sbjct: 367 -WPDVFKALDTSTDTKTLASPKLMTLNGEEANLSILEEKPYKVVNTDSNGEKTTSWEYAE 425 Query: 313 -GVVLHFTPTVLSPGRIGLRIQ------TEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 GV L FTP + I L I +E+++ G P+ + R +TT+ L Sbjct: 426 AGVELTFTPWISKNNEIELEIAPTVSSFSEIADSQTGEGESPPPAKKSRSVETTLRLKDN 485 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T + GL++ D + IPLL +P+ G LF+ + E+ I TP ++K Sbjct: 486 ETFAVGGLIQTDKEGKITKIPLLGDLPLFGELFKFREPSDSTNELIIFVTPHIIK 540 >gi|251772573|gb|EES53138.1| putative general secretion pathway protein D [Leptospirillum ferrodiazotrophum] Length = 565 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 11/191 (5%) Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 V GG F GV + + +L+ALE + +RTL+ P + A G A T G + T Sbjct: 320 VLTGGTFKYNGV-NYPNIGELLNALETYSDVRTLSTPEILATDGVKAKITIGEDVPFITG 378 Query: 299 SSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMP 349 S T +V T + G+ L TP +LS R+ L ++ +S VIG A P Sbjct: 379 QSQTVGGNVMTMIQRQNVGITLELTPHILSHNRVRLDVKQTISALTNASQVIGTIAVG-P 437 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + R A T + + SG T+V+ GL+ + +GIP LS IPILG LF N+ ++ + Sbjct: 438 TTTKRSAKTNLTISSGQTVVIGGLISKETSINDQGIPFLSDIPILGYLFSNTNNEKKRDD 497 Query: 410 IFIAATPFLVK 420 + I TP++++ Sbjct: 498 LLIFLTPYVIR 508 >gi|313673420|ref|YP_004051531.1| type ii and iii secretion system protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940176|gb|ADR19368.1| type II and III secretion system protein [Calditerrivibrio nitroreducens DSM 19672] Length = 786 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 5/163 (3%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F+ + + A+E +T++ P +T + Q A SGG+ + + S T T D G Sbjct: 624 FNIDMAISAMESRNKAKTISSPKITTLDNQEAEIKSGGKAI---IVPSGDNTQSQTIDVG 680 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L P + + I + I+ E S +G +G +KA T V L +G T V+ G+ Sbjct: 681 IKLKVKPHITANNMIFMEIEVEKSS--LGAVSGTNAETLEKKAKTQVLLANGETTVIGGI 738 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +D+ ++K +P LSKIP+LG LFRN+ R + E+ + TP Sbjct: 739 YEDEQNEIKNEVPGLSKIPLLGWLFRNNIERRAKKELLVFITP 781 >gi|288818949|ref|YP_003433297.1| putative type IV pilus biogenesis protein [Hydrogenobacter thermophilus TK-6] gi|288788349|dbj|BAI70096.1| putative type IV pilus biogenesis protein [Hydrogenobacter thermophilus TK-6] gi|308752535|gb|ADO46018.1| type II and III secretion system protein [Hydrogenobacter thermophilus TK-6] Length = 592 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 116/264 (43%), Gaps = 42/264 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKSFAADFGGKFV--- 239 QV ++ I EVR L+++G ++ G+ G + A G FV Sbjct: 332 QVKIEARIVEVREQALRELGINWNVLLSQARVPQFWQGGAGQGANIGVAPAPGTIFVPPD 391 Query: 240 ------------------SEGGDFSV---KGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + GG F+ KG+L+ + L ALER I+ +A+PT+ Sbjct: 392 PTSVGPRSPIYYTPGLSQTPGGIFAFSYQKGMLNALNLR--LSALERIAMIKNIAKPTVV 449 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF--TPTVLSPGRIGLRIQTEV 336 ++ Q A+ G Q Y+T + GA + VVL TP V GRI L I + Sbjct: 450 TVNAQKATIKQGVQIPYQTTVVAGGAQAANIQFKDVVLQLDVTPVVSPDGRILLDINLKR 509 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 P G P+ ++A T V + G T+V+ G++ + + EG+P L ++P+L Sbjct: 510 DTP--GEQTPQGPAINTKEASTKVVVNDGDTLVIGGIIDNQETKTNEGLPGLVRVPVLKW 567 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 LF + ++E+ I TP LV+ Sbjct: 568 LFGQESSQKIQSELLIFLTPVLVR 591 >gi|326318805|ref|YP_004236477.1| general secretion pathway protein D [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375641|gb|ADX47910.1| general secretion pathway protein D [Acidovorax avenae subsp. avenae ATCC 19860] Length = 823 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 124/252 (49%), Gaps = 32/252 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--GGDFSVKGVLD 252 QV ++ +I EV D Q G Q + S+SGPS A G+ ++ G + S+ + Sbjct: 532 QVLIEASIVEVTLDDSLQYGLQWAF--SNSGPSNLNGA---GQLLTNAPGSNSSIGASIP 586 Query: 253 R-----FSF---------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297 FS+ VL+AL ++ ++ P+L + +A + G Q KT Sbjct: 587 TPTTSGFSYALSNSLGNVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTG 646 Query: 298 --VSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--- 348 S+ +G TSV D GV L TP+V + + ++I V++ + N+G++ Sbjct: 647 TLTSAISGGTSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTD-AVADNSGNVSLQ 705 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P ++ R+ + V + SG IVL GL++D K GIPLL IP++G+LF N+ T Sbjct: 706 PVFQQRQITSKVAVRSGEAIVLGGLIRDTNNSSKSGIPLLQDIPVVGSLFSNNGKTGTRT 765 Query: 409 EIFIAATPFLVK 420 E+ + TP +V+ Sbjct: 766 ELLVVITPKVVR 777 >gi|205360346|ref|ZP_02682767.2| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350396|gb|EDZ37027.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 389 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ S G + D SV R Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 209 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386 >gi|207858728|ref|YP_002245379.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206710531|emb|CAR34889.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 412 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ S G + D SV R Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409 >gi|205356871|ref|ZP_02343070.2| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325673|gb|EDZ13512.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 389 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ S G + D SV R Sbjct: 157 QVELVAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 209 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEEERRELVVFITPRLV 386 >gi|261341890|ref|ZP_05969748.1| type IV pili biogenesis protein PilQ [Enterobacter cancerogenus ATCC 35316] gi|288315792|gb|EFC54730.1| type IV pili biogenesis protein PilQ [Enterobacter cancerogenus ATCC 35316] Length = 403 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 7/232 (3%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKG 249 DQV L I + L+++G + ++ +S G + AD + F++ G Sbjct: 170 DQVELAAHIVTINEKSLRELGVKWNLAEASEAGRVGEVTALGADLSVANATTHVGFNI-G 228 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 +D + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 229 RIDGRLLDLELSALEQKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEF 288 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367 + + + TP VL GR+ L++ + P V+ G+ + ++ +T VE+ SG T Sbjct: 289 KEAVLGMEVTPVVLPGGRVRLKLHISENMPGQVLQQADGETLAIDKQEIETQVEVKSGET 348 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G+ + + +P L +IP LG LFR+ + E E+ + TP LV Sbjct: 349 LALGGIFSQKNKTGSDSVPGLGRIPWLGQLFRHDGKDNERRELVVFITPRLV 400 >gi|200387767|ref|ZP_03214379.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604865|gb|EDZ03410.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 389 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ S G + D SV R Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 209 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386 >gi|294791632|ref|ZP_06756780.1| putative type II and III secretion system protein [Veillonella sp. 6_1_27] gi|294456862|gb|EFG25224.1| putative type II and III secretion system protein [Veillonella sp. 6_1_27] Length = 432 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 20/226 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGV 250 QV L+ TI + + K+ GF+ S +TG + S+ A FG E F VK Sbjct: 212 QVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPE 271 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT- 309 L +E + +A+P++ A++G++A G + S G +T Sbjct: 272 LS---------LMESSGKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTR 322 Query: 310 -HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGG 366 + G+ L++TP + + G + +I EVS P++ +M +Y++ R+A T V L G Sbjct: 323 YEEVGIKLNYTPIITADGGVDAKIHAEVSTPIM---VSEMKAYKISTRQAHTRVRLQPGE 379 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +V+ GL+ + Q + IP+L IP+LG LFR+SR ++ E+ + Sbjct: 380 VLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDSIEMLM 425 >gi|269797724|ref|YP_003311624.1| type II and III secretion system protein [Veillonella parvula DSM 2008] gi|269094353|gb|ACZ24344.1| type II and III secretion system protein [Veillonella parvula DSM 2008] Length = 432 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 20/226 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGV 250 QV L+ TI + + K+ GF+ S +TG + S+ A FG E F VK Sbjct: 212 QVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPE 271 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT- 309 L +E + +A+P++ A++G++A G + S G +T Sbjct: 272 LS---------LMESSGKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTR 322 Query: 310 -HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGG 366 + G+ L++TP + + G + +I EVS P++ +M +Y++ R+A T V L G Sbjct: 323 YEEVGIKLNYTPIITADGGVDAKIHAEVSTPIM---VSEMKAYKISTRQAHTRVRLQPGE 379 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +V+ GL+ + Q + IP+L IP+LG LFR+SR ++ E+ + Sbjct: 380 VLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDSIEMLM 425 >gi|62181990|ref|YP_218407.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129623|gb|AAX67326.1| putative transport protein, possibly in biosynthesis of type IV pilin [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716478|gb|EFZ08049.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 412 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVATLSSDLSVAAATSRV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409 >gi|16766776|ref|NP_462391.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422046|gb|AAL22350.1| putative transport protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261248643|emb|CBG26481.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995705|gb|ACY90590.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160031|emb|CBW19550.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914512|dbj|BAJ38486.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323131847|gb|ADX19277.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990340|gb|AEF09323.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 412 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ S G + D SV R Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409 >gi|224585282|ref|YP_002639081.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469810|gb|ACN47640.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 379 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 147 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVATLSSDLSVAAATSRV 199 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 200 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 259 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 260 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 319 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 320 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 376 >gi|108809091|ref|YP_653007.1| putative outer membrane secretin family protein [Yersinia pestis Antiqua] gi|108781004|gb|ABG15062.1| putative outer membrane secretin family protein [Yersinia pestis Antiqua] Length = 149 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 6/126 (4%) Query: 327 RIGLRIQTEVS--EPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 RI + + EVS + V + GD PS R+RKA+TTVEL G + +L GL+ Q+ + Sbjct: 6 RIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTEQESLK 65 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 IP + IP+LGALFRN++ R ++E+ + AT LVKPV+ R + PD ++ + Sbjct: 66 KIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTVER--- 122 Query: 444 FFNRVN 449 FFN N Sbjct: 123 FFNLTN 128 >gi|238913611|ref|ZP_04657448.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 412 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409 >gi|289824820|ref|ZP_06544263.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 389 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 209 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386 >gi|204928849|ref|ZP_03220048.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322282|gb|EDZ07480.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 389 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ S G + D SV R Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 209 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P ++ G++ + ++ +T VE+ Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQILQQADGEVLAIDKQEIETQVEV 329 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386 >gi|330819176|ref|YP_004348038.1| type II and III secretion system protein [Burkholderia gladioli BSR3] gi|327371171|gb|AEA62526.1| type II and III secretion system protein [Burkholderia gladioli BSR3] Length = 564 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 17/252 (6%) Query: 179 SSSKKVMNLLNIAGEDQ-------VTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKS 229 +++ V NL+N D+ + KV I E+ R+ + +G + I G +G Sbjct: 162 AATAGVPNLVNAIAVDEGDALKKTIHFKVRIMELTRNAQENLGIEWDRKIAGPQAG---- 217 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 A + G G + G+ + T+ + R A LA P L SG +ASF + Sbjct: 218 -AQGYIGSQAVAGPGMVIAGISTHIA-STLNLMITRGDAY-VLAAPELNTKSGGTASFLA 274 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 GGQ + + + G T V DYG+ L P V + I +I TE+S+ V+ G P Sbjct: 275 GGQ-VPIPRAGALGTTDVEYKDYGIKLDIKPVVDANNVISAQIDTEISQIDPSVSYGGYP 333 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + R A + + L +G T+ ++GL+ D +P L ++PI+G LFR+ F + ++ Sbjct: 334 GFLTRSARSDISLRAGETMAISGLVNADAIGNMSRLPFLGRLPIIGRLFRSDEFRSKRSD 393 Query: 410 IFIAATPFLVKP 421 + I TP + P Sbjct: 394 LVIFVTPMISDP 405 >gi|322614138|gb|EFY11074.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618029|gb|EFY14922.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625356|gb|EFY22182.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322632290|gb|EFY29041.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636359|gb|EFY33066.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643215|gb|EFY39784.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644783|gb|EFY41319.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651192|gb|EFY47576.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654940|gb|EFY51255.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322663102|gb|EFY59306.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668588|gb|EFY64741.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674608|gb|EFY70701.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678186|gb|EFY74247.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682557|gb|EFY78578.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684270|gb|EFY80276.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192175|gb|EFZ77407.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196399|gb|EFZ81551.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201800|gb|EFZ86863.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206342|gb|EFZ91303.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211936|gb|EFZ96763.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216841|gb|EGA01564.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222240|gb|EGA06623.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323228183|gb|EGA12314.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233550|gb|EGA17643.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323236988|gb|EGA21055.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243797|gb|EGA27813.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323255748|gb|EGA39498.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323267633|gb|EGA51115.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268514|gb|EGA51981.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 389 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 209 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386 >gi|320087902|emb|CBY97664.1| Protein transport protein hofQ Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 412 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409 >gi|205354888|ref|YP_002228689.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274669|emb|CAR39723.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326630034|gb|EGE36377.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 412 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ S G + D SV R Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGGIPWLGQLFRHDGKEDERRELVVFITPRLV 409 >gi|322629821|gb|EFY26594.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322659197|gb|EFY55449.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|323227365|gb|EGA11531.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323245960|gb|EGA29947.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250737|gb|EGA34615.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323261394|gb|EGA44980.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] Length = 412 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409 >gi|195873801|ref|ZP_02699139.2| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197248588|ref|YP_002148409.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|195632392|gb|EDX50876.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212291|gb|ACH49688.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 389 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 209 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386 >gi|321226537|gb|EFX51587.1| Type IV pilus biogenesis protein PilQ [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 389 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ S G + D SV R Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 209 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 210 GFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386 >gi|205357592|ref|ZP_03223780.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205330642|gb|EDZ17406.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 426 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ S G + D SV R Sbjct: 194 QVELAAHIVTINEKSLRELGVKWTLADATQAGSV-------GDVTTLSSDLSVAAATSRV 246 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 247 GFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 306 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 307 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 366 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 367 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 423 >gi|16762799|ref|NP_458416.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144286|ref|NP_807628.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053391|ref|ZP_03346269.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416770|ref|ZP_03349914.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426742|ref|ZP_03359492.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646579|ref|ZP_03376632.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852697|ref|ZP_03382229.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25324276|pir||AB1000 type II secretion system protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505105|emb|CAD08126.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139923|gb|AAO71488.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 412 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409 >gi|56415404|ref|YP_152479.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364334|ref|YP_002143971.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129661|gb|AAV79167.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095811|emb|CAR61383.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 412 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409 >gi|205359546|ref|ZP_03224342.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344340|gb|EDZ31104.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 429 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 197 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 249 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 250 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 309 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 310 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 369 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 370 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 426 >gi|194470789|ref|ZP_03076773.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358599|ref|ZP_02657680.2| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194457153|gb|EDX45992.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333155|gb|EDZ19919.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 426 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 194 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 246 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 247 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 306 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 307 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 366 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 367 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 423 >gi|161616525|ref|YP_001590490.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365889|gb|ABX69657.1| hypothetical protein SPAB_04341 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 389 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 157 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 209 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 210 GFNIGRISGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 330 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386 >gi|194446460|ref|YP_002042738.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405123|gb|ACF65345.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 426 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 194 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 246 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 247 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 306 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 307 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 366 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 367 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 423 >gi|194451757|ref|YP_002047512.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359079|ref|ZP_03224213.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194410061|gb|ACF70280.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338987|gb|EDZ25751.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 426 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 194 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 246 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 247 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 306 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 307 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 366 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 367 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 423 >gi|163801327|ref|ZP_02195226.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4] gi|159174816|gb|EDP59616.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4] Length = 416 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 84/370 (22%), Positives = 150/370 (40%), Gaps = 46/370 (12%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I++ +N+ L + +D++V DV + +YL G+ VI+ G + Sbjct: 37 INMSVNETKHLPLSYVPKDIVVGSDKVVDVNLADSNNLYLIAHEAGKTKVIVKGEEETTE 96 Query: 110 LNLDILIERDIAHLEMTLRRFIAD---SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + RD L +F+ +++ V++ + ++G V+ D EL++ Sbjct: 97 YVIQV---RDTDKDTHNLNKFLESAGYTDVEAVKVAEKIYINGAVK---DKVEKRELNKL 150 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 + R N++ I QV + +T+AEV + I ++G +G Sbjct: 151 VRNAISRYYVDNTT---------ITENRQVRINLTMAEVSKSIDDELGITWG-----AGW 196 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 SK + GV + S + L R L P++ +G +A+ Sbjct: 197 SK------------------IDGVTSK-SLSATIGLLSRNNLATVLTRPSIIVTNGSTAT 237 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344 F +GG+ ++ V DYG+ L F P + I LR S+ I + Sbjct: 238 FEAGGE--VPVLTYDDENVDVEFKDYGIKLEFKPNIKRDQSIDLRANVSSSQIADFIKLG 295 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 D P R +T + + G VLAGL+ + Q +P L +PI+G+LF + F Sbjct: 296 GNDTPQLNTRSVNTELNVNDGDIFVLAGLIDNSQTQAVSKVPFLGYLPIIGSLFTSENFK 355 Query: 405 REETEIFIAA 414 +TE+ I A Sbjct: 356 SNKTELMIFA 365 >gi|161505946|ref|YP_001573058.1| outer membrane porin HofQ [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867293|gb|ABX23916.1| hypothetical protein SARI_04127 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 400 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 106/237 (44%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G D SV R Sbjct: 168 QVELAAHIVTINEKSLRELGVKWTLADAQQ-------AGAVGDVTMLSSDLSVAAATSRV 220 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 221 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 280 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 281 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 340 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP LG LFR+ E E+ + TP LV Sbjct: 341 KSGETLALGGIFSRKNKSGRDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 397 >gi|289806224|ref|ZP_06536853.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 295 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 63 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 115 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 116 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 175 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 176 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 235 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 236 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 292 >gi|303251572|ref|ZP_07337746.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252115|ref|ZP_07534014.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649570|gb|EFL79752.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860415|gb|EFM92429.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 221 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 9/173 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + ++ AL+ + LAEP ++ +SG++A GG+ + G SV ++G+ Sbjct: 8 NLNVLISALDNQNNGKILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGI 66 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVL 370 L V RI L + VS + G VN+ +P + R++ +T E+ +G + ++ Sbjct: 67 KLAVGAKVQKSDRIRLVLSQSVS-TIAGNYEIVNS-RIPIFNTRRSKSTFEVGNGESFII 124 Query: 371 AGLL-KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +GLL K DI+ +K+ +P+L IPILGA FRN+ +RE E+ + AT LVKPV Sbjct: 125 SGLLNKQDIEGIKK-VPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPV 176 >gi|187251612|ref|YP_001876094.1| rcpA subunit [Elusimicrobium minutum Pei191] gi|186971772|gb|ACC98757.1| RcpA subunit [Elusimicrobium minutum Pei191] Length = 248 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 17/187 (9%) Query: 244 DFSVK---GVLDRFSFE------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 DF+ K GVL+ SFE T L +E + L+ P + +G +A+ + GGQ Sbjct: 59 DFAEKEIPGVLEIGSFERKTALTTRLRLMENEGKAQILSNPKIVTRTGTNANISVGGQIP 118 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL--SPGRIGLRIQTEVSEP----VIGVNAGDM 348 + V++ TS+ DYGV+L+ PT++ I L++ EVS P + V + + Sbjct: 119 FPEVNNQGVGTSML--DYGVILNVMPTIIPEQSNLINLQVNLEVSAPDYSRTVSVGSTTV 176 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS R+ +T VEL SG T+V+ GL + IPLL ++P++G LFRN E+ Sbjct: 177 PSINKRRVETQVELHSGETLVIGGLKSSSRNVSVDRIPLLGRLPLIGLLFRNKDTLDEQR 236 Query: 409 EIFIAAT 415 +F+ T Sbjct: 237 SLFLFVT 243 >gi|194431292|ref|ZP_03063585.1| protein transporter HofQ [Shigella dysenteriae 1012] gi|194420747|gb|EDX36823.1| protein transporter HofQ [Shigella dysenteriae 1012] Length = 412 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+VL G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLVLGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|260886221|ref|ZP_05897484.1| putative secretin and TonB short domain protein [Selenomonas sputigena ATCC 35185] gi|260863940|gb|EEX78440.1| putative secretin and TonB short domain protein [Selenomonas sputigena ATCC 35185] Length = 462 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 27/268 (10%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGPSKSFAADF 234 + ++ V++ L++ E QV+L+ + + ++ K++G + G SKS Sbjct: 191 KARAEAVLHSLDVPTE-QVSLEARVVALEKNAAKELGVDWDWSPLPIDPHGTSKS----- 244 Query: 235 GGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G + G D V GV+ F + + AL LA P +T + G+ Sbjct: 245 GAEGSRRGIDGEVPGVIRFGRTPEGKPYEFYYRAKIAALITDGKANVLARPNITTLQGRE 304 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A GG ++ + + G++L +TP + G I R+ TEVS PV Sbjct: 305 AVINIGGSVPVPETQTTNSTVTTSITYKKAGIILRYTPRIHENGEITARVHTEVSSPVY- 363 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 V+A ++ R ADTTV L G T+V+ GL+ + ++ +PLL IPILG F++ R Sbjct: 364 VDALKAYKFQERSADTTVRLKDGETMVIGGLIGSEESRVFAKVPLLGDIPILGTFFKSVR 423 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430 + ++EI I T + +RD S P Sbjct: 424 RTKTDSEIMIFLTAHI-----LRDTSPP 446 >gi|330839785|ref|YP_004414365.1| type II and III secretion system protein [Selenomonas sputigena ATCC 35185] gi|329747549|gb|AEC00906.1| type II and III secretion system protein [Selenomonas sputigena ATCC 35185] Length = 447 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 27/268 (10%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGPSKSFAADF 234 + ++ V++ L++ E QV+L+ + + ++ K++G + G SKS Sbjct: 176 KARAEAVLHSLDVPTE-QVSLEARVVALEKNAAKELGVDWDWSPLPIDPHGTSKS----- 229 Query: 235 GGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G + G D V GV+ F + + AL LA P +T + G+ Sbjct: 230 GAEGSRRGIDGEVPGVIRFGRTPEGKPYEFYYRAKIAALITDGKANVLARPNITTLQGRE 289 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A GG ++ + + G++L +TP + G I R+ TEVS PV Sbjct: 290 AVINIGGSVPVPETQTTNSTVTTSITYKKAGIILRYTPRIHENGEITARVHTEVSSPVY- 348 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 V+A ++ R ADTTV L G T+V+ GL+ + ++ +PLL IPILG F++ R Sbjct: 349 VDALKAYKFQERSADTTVRLKDGETMVIGGLIGSEESRVFAKVPLLGDIPILGTFFKSVR 408 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430 + ++EI I T + +RD S P Sbjct: 409 RTKTDSEIMIFLTAHI-----LRDTSPP 431 >gi|288572884|ref|ZP_06391241.1| general secretion pathway protein D [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568625|gb|EFC90182.1| general secretion pathway protein D [Dethiosulfovibrio peptidovorans DSM 11002] Length = 659 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 75/269 (27%), Positives = 125/269 (46%), Gaps = 35/269 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGK------FVSEGGDFS 246 QV ++ IAEV LK G + G S FAA+ GG FV D S Sbjct: 358 QVMVRGLIAEVNLTNLKNAGIDWATWGGQVSGSTVFAANAALGGSTGVPSTFVDWFQDLS 417 Query: 247 VKGVLDRFSFET-------------------VLHALERATAIRTLAEPTLTAISGQSASF 287 K + + ET + L++ A+ L+ P L + +S Sbjct: 418 KKETYEWITPETGEPYREKTTVYEGNSLIYAYVQLLKKYDAMNILSMPRLMCTDNKESSL 477 Query: 288 TSGGQ--HLYKTVSSSTGATSV-TTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 G + + S + +SV ++DY G+ L TP + S + L I+ + +E V+ Sbjct: 478 MVGQTIPQMKASTSDISNPSSVQNSYDYKDTGLKLKITPHIRSGNLVALDIE-QSTEEVL 536 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 P R+ T+V++ +G TI+L GLLK+ + LK+ +P+LS IP++G LF++S Sbjct: 537 SAMTSTTPVTAKREVKTSVQVRNGETIILGGLLKETEKSLKQRVPILSYIPLVGELFKSS 596 Query: 402 RFNREETEIFIAATPFLVK-PVAMRDLSR 429 RE+ E+ + TP++++ P A + S+ Sbjct: 597 TNQREKIELMVFLTPYILETPEAATEASK 625 >gi|149195014|ref|ZP_01872107.1| type II and III secretion system protein:NolW-like protein [Caminibacter mediatlanticus TB-2] gi|149134935|gb|EDM23418.1| type II and III secretion system protein:NolW-like protein [Caminibacter mediatlanticus TB-2] Length = 579 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 128/252 (50%), Gaps = 21/252 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---HSITGSSSGPSKSFAADFGGKF 238 K ++N L+ E QV +K I E+ QIG + ++ +G++SG + +A+ GG Sbjct: 301 KTIINALDTPKE-QVYVKARILEISNTKAAQIGNRLGLYAGSGTTSG-LYTLSANLGGPA 358 Query: 239 VS---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 ++ ++ + + L LE A + L+EP++ I+ ++ G Sbjct: 359 IAFDVASLGLTIPTIKQGIALGATLDLLETYGAAKKLSEPSILCINNTPSTIYVG----- 413 Query: 296 KTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 KTVS S+T + S T D G+ L P + S ++ L + + + + G + +M Sbjct: 414 KTVSVLTGKTTSTTTSESYTRQDIGLTLKVKPRIDSDNKVALNVDAVIEDLLPG-SPVNM 472 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P R +TT + +G +I++ GL++D+ +PLL IPILGALFR+ + N+++T Sbjct: 473 PITSKRTINTTTIVRNGQSIIIGGLVRDNKDITLNKVPLLGDIPILGALFRHKQINKDKT 532 Query: 409 EIFIAATPFLVK 420 + I TP++VK Sbjct: 533 TLVIVLTPYIVK 544 >gi|332085619|gb|EGI90783.1| transport protein hofQ [Shigella dysenteriae 155-74] Length = 386 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+VL G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLVLGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|238927984|ref|ZP_04659744.1| Fimbrial type IV assembly protein pilQ precursor [Selenomonas flueggei ATCC 43531] gi|238883944|gb|EEQ47582.1| Fimbrial type IV assembly protein pilQ precursor [Selenomonas flueggei ATCC 43531] Length = 428 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 120/249 (48%), Gaps = 23/249 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADF--GGK 237 +++++ L+ A QV+L+ + V + K++G S + P ++ A ++ G+ Sbjct: 176 REIVSALDTAPR-QVSLEARVVAVSKRAAKELGVDWSWSSLPQYPNVTRDSAGNWHVSGR 234 Query: 238 FVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 G S GV+ F + + AL + LA P +T + G+ A Sbjct: 235 NAGTAGR-SAPGVIRFGRGPEGLPYEFYYSAAIRALITEGKAKMLARPNVTTVQGREALI 293 Query: 288 TSGGQHL--YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 G + T S++ T + + G++L +TP V + G I + TEVS PV Sbjct: 294 NIGAEVPVPVVTTSNNVTTTGIEYREAGIILRYTPRVTADGNIVAHVHTEVSTPVF---V 350 Query: 346 GDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 D+ +YR +K ADTTV L +G T+V+ GL+ D + IP L +P+LGA FR R Sbjct: 351 DDLKAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRTLAKIPFLGDLPLLGAFFRTVRT 410 Query: 404 NREETEIFI 412 ++ E+E+ I Sbjct: 411 SKNESELMI 419 >gi|254487874|ref|ZP_05101079.1| general secretion pathway protein D [Roseobacter sp. GAI101] gi|214044743|gb|EEB85381.1| general secretion pathway protein D [Roseobacter sp. GAI101] Length = 644 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 44/270 (16%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ I EV D+ +++G Q I G ++ A FG G S++ VL Sbjct: 357 QVMIEAAIVEVSGDVAERLGVQLGI-GENTETGSIAATSFGN------GGGSLQNVLVAL 409 Query: 255 -------------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 SF ++ AL +T+ L+ P++T + QSA+ G + Sbjct: 410 GQSNAAALSTGLSVGLASDSFGALIQALNTSTSANLLSTPSVTTMDNQSATIVVGQNVPF 469 Query: 296 KTVSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGD 347 +T +T +V D G+ + P + + G + L I+ EVS + V G A D Sbjct: 470 RTGRLTTDGGNVAEVIEREDVGITMVVKPRITAGGVVQLEIEQEVSSLTNQAVTG--AAD 527 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + R R +TTV +GGT+VL GL+ DD Q + +PLL +P+LG LF++ +R + Sbjct: 528 LVTNR-RVINTTVLAENGGTVVLGGLITDDRLQNNQKVPLLGDVPVLGNLFKSRNNSRSK 586 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +F+ FL +P M L+R D + E Sbjct: 587 RTLFV----FL-RPTIM--LTRADLEKAAE 609 >gi|312972346|ref|ZP_07786520.1| transport protein hofQ [Escherichia coli 1827-70] gi|310334723|gb|EFQ00928.1| transport protein hofQ [Escherichia coli 1827-70] Length = 386 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGNDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP+ G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|309703802|emb|CBJ03143.1| protein transport protein [Escherichia coli ETEC H10407] Length = 412 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP+ G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDERRELVVFNTPRLV 409 >gi|270264426|ref|ZP_06192692.1| putative outer membrane porin HofQ [Serratia odorifera 4Rx13] gi|270041562|gb|EFA14660.1| putative outer membrane porin HofQ [Serratia odorifera 4Rx13] Length = 414 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 108/242 (44%), Gaps = 27/242 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + + L+++G + + A D G GDF+V L+R Sbjct: 183 QVQLAAHIVTINSESLRELGVRWGL-----------APDEGAAKPLRMGDFNVSLPLERS 231 Query: 255 SFETVLH--------------ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + H ALE+ + +A P L Q+AS G + Y+ S Sbjct: 232 AVSAGFHLARIGGRLLDLELMALEQENRVEIIASPRLLTAHQQTASIKQGTEIPYEVKSG 291 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--T 358 S+GATS+ + + + TP +L GRI L +Q + P ++ D + + K + T Sbjct: 292 SSGATSMEFKEAVLGMEVTPKILPNGRITLTLQISQNMPGRSISRADGEALAIDKQEIKT 351 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + G TIVL G+ + Q + +P L IP+LG+LF+ S + E+ I TP L Sbjct: 352 QVTVKDGETIVLGGVFQRQSAQGADKVPGLGDIPLLGSLFKQSTKQHKRRELVIFITPTL 411 Query: 419 VK 420 +K Sbjct: 412 IK 413 >gi|282848997|ref|ZP_06258386.1| bacterial type II and III secretion system protein [Veillonella parvula ATCC 17745] gi|282581272|gb|EFB86666.1| bacterial type II and III secretion system protein [Veillonella parvula ATCC 17745] Length = 440 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 20/226 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGV 250 QV L+ TI + + K+ GF+ S +TG + S+ A FG E F VK Sbjct: 220 QVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPE 279 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT- 309 L +E + +A+P++ AI+G++A G + S G +T Sbjct: 280 LS---------LMESSGKAVLIAKPSIMAINGETAHILIGERIPVIEESEVNGERKRSTR 330 Query: 310 -HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGG 366 + G+ L++TP + + + +I EVS P++ +M +Y++ R+A T V L G Sbjct: 331 YEEVGIKLNYTPIITADDGVDAKIHAEVSTPIM---VSEMKAYKISTRQAHTRVRLQPGE 387 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +V+ GL+ + Q + IP+L IP+LG LFR+SR ++ E+ + Sbjct: 388 VLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDSIEMLM 433 >gi|170018373|ref|YP_001723327.1| outer membrane porin HofQ [Escherichia coli ATCC 8739] gi|169753301|gb|ACA76000.1| type IV pilus secretin PilQ [Escherichia coli ATCC 8739] Length = 386 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP+ G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|145320312|gb|ABP62459.1| type IV pilus secretin PilQ [Enterobacter sp. 638] Length = 373 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248 QV L+ I + L+++G + ++ +++ A G+ + G D SV Sbjct: 141 QVQLEAHIVTINEKSLRELGVKWNL-------AEAQGAGAPGQVTTMGADLSVANATTHV 193 Query: 249 ----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 G +D + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 194 GFNIGRIDGRLLDLELSALEQKQQLEIIASPRLLASHMQPASIKQGSEIPYQVSSGDSGA 253 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TP VL GR+ L+++ + P V+ G+ + ++ +T VE+ Sbjct: 254 TSVEFKEAVLGMEVTPVVLPNGRVRLKLRISENMPGQVLQQADGETLAIDKQEIETQVEV 313 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +P L +P+LG FR+ + E E+ + TP L+ Sbjct: 314 KSGETLALGGIFSQKNKTASDSVPGLGHVPLLGQFFRHDGKDNERRELVVFITPRLI 370 >gi|213622639|ref|ZP_03375422.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 250 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 18 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 70 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 71 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 130 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 131 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 190 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 191 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 247 >gi|317049888|ref|YP_004117536.1| type IV pilus secretin PilQ [Pantoea sp. At-9b] gi|316951505|gb|ADU70980.1| type IV pilus secretin PilQ [Pantoea sp. At-9b] Length = 418 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 2/167 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + I +A P L Q+A+ G + Y+ S ++GAT++ + + + T Sbjct: 249 LSALEQESQIDIIASPRLFTSHQQTATIKQGTEIPYEVKSGNSGATAIEFKEAVLGMEVT 308 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDD 377 P VL GRI L+++ + P +N G+ + + K DT V L G T+ L G+ + Sbjct: 309 PVVLGNGRIQLKLRLSQNMPGRSINTGEHQTLSIDKQEIDTQVTLRDGETLALGGIFQQQ 368 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 Q + +P L K+P++G LFR+ ++ E+ I TP LV+ A+ Sbjct: 369 RAQNENRVPWLGKLPVVGNLFRHQTDEHKKKELVIFITPRLVREAAL 415 >gi|157162867|ref|YP_001460185.1| outer membrane porin HofQ [Escherichia coli HS] gi|254038556|ref|ZP_04872612.1| transporter HofQ [Escherichia sp. 1_1_43] gi|157068547|gb|ABV07802.1| protein transporter HofQ [Escherichia coli HS] gi|226839062|gb|EEH71085.1| transporter HofQ [Escherichia sp. 1_1_43] gi|323934619|gb|EGB31019.1| type IV pilus secretin PilQ [Escherichia coli E1520] Length = 412 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP+ G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|170766950|ref|ZP_02901403.1| protein transporter HofQ [Escherichia albertii TW07627] gi|170124388|gb|EDS93319.1| protein transporter HofQ [Escherichia albertii TW07627] Length = 386 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + ++ + S G + +D + F++ + Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQHVGSVGQVTTLGSDLSVATATTHIGFNIGRI 213 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 214 NGRL-LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 272 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ SG T+ Sbjct: 273 EAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETL 332 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 333 ALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|22127359|ref|NP_670782.1| hypothetical protein y3485 [Yersinia pestis KIM 10] gi|108810715|ref|YP_646482.1| outer membrane secretin family protein [Yersinia pestis Nepal516] gi|229840586|ref|ZP_04460745.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842864|ref|ZP_04463016.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229900910|ref|ZP_04516034.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|270487710|ref|ZP_06204784.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294502758|ref|YP_003566820.1| hypothetical protein YPZ3_0648 [Yersinia pestis Z176003] gi|21960443|gb|AAM87033.1|AE013951_8 hypothetical [Yersinia pestis KIM 10] gi|108774363|gb|ABG16882.1| outer membrane secretin family protein [Yersinia pestis Nepal516] gi|229682249|gb|EEO78341.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|229690131|gb|EEO82188.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229696952|gb|EEO86999.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|262360790|gb|ACY57511.1| hypothetical protein YPD4_0602 [Yersinia pestis D106004] gi|262364735|gb|ACY61292.1| hypothetical protein YPD8_0602 [Yersinia pestis D182038] gi|270336214|gb|EFA46991.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294353217|gb|ADE63558.1| hypothetical protein YPZ3_0648 [Yersinia pestis Z176003] gi|320016745|gb|ADW00317.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 149 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/126 (39%), Positives = 75/126 (59%), Gaps = 6/126 (4%) Query: 327 RIGLRIQTEVS--EPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 RI + + EVS + V + GD PS R+RKA+TTVEL G + +L GL+ ++ + Sbjct: 6 RIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLK 65 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 IP + IP+LGALFRN++ R ++E+ + AT LVKPV+ R + PD ++ + Sbjct: 66 KIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTVER--- 122 Query: 444 FFNRVN 449 FFN N Sbjct: 123 FFNLTN 128 >gi|91212863|ref|YP_542849.1| outer membrane porin HofQ [Escherichia coli UTI89] gi|117625659|ref|YP_858982.1| outer membrane porin HofQ [Escherichia coli APEC O1] gi|218560448|ref|YP_002393361.1| outer membrane porin HofQ [Escherichia coli S88] gi|237703118|ref|ZP_04533599.1| protein transporter HofQ [Escherichia sp. 3_2_53FAA] gi|91074437|gb|ABE09318.1| protein transport protein HofQ precursor [Escherichia coli UTI89] gi|115514783|gb|ABJ02858.1| putative transport protein HofQ precursor [Escherichia coli APEC O1] gi|218367217|emb|CAR04991.1| fimbrial transporter [Escherichia coli S88] gi|226902382|gb|EEH88641.1| protein transporter HofQ [Escherichia sp. 3_2_53FAA] gi|294490021|gb|ADE88777.1| protein transporter HofQ [Escherichia coli IHE3034] gi|312947939|gb|ADR28766.1| outer membrane porin HofQ [Escherichia coli O83:H1 str. NRG 857C] gi|323950048|gb|EGB45931.1| type IV pilus secretin PilQ [Escherichia coli H252] gi|323954672|gb|EGB50454.1| type IV pilus secretin PilQ [Escherichia coli H263] Length = 412 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|331659679|ref|ZP_08360617.1| protein transport protein HofQ [Escherichia coli TA206] gi|331052894|gb|EGI24927.1| protein transport protein HofQ [Escherichia coli TA206] Length = 412 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|171913118|ref|ZP_02928588.1| probable general secretion pathway protein D [Verrucomicrobium spinosum DSM 4136] Length = 888 Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 33/260 (12%) Query: 220 TGSSSGPSKSF------------AADFGGKFVS----EGGDFSVKGVLDRFSFETVLHAL 263 TGS+SG S +F AD ++ F++ G L + S + + AL Sbjct: 602 TGSNSGLSSAFIAGREEIITNNNVADMRDNLITTALANAKGFNIYGQLGQ-SLDVFVSAL 660 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVTT----HDYG 313 E + L+ P++ A++ + A TSG L S++ G +VTT D Sbjct: 661 ETTNNFKVLSRPSVFALNNKRAVITSGQSIPVPESSLANASSNNNGTGNVTTTITYKDVV 720 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVL 370 + L P + G + LR+ +V++ V+G V ++P + TTV +P+G T+VL Sbjct: 721 LKLEVIPLINPDGDVTLRV-AQVNDTVVGNQIVAQNNVPIIGTEQIATTVTVPTGNTVVL 779 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLS 428 GL+ + ++ EGIP+LS+IP LG LFR ++E E+ I P +V R Sbjct: 780 GGLITETDKKDTEGIPVLSRIPGLGRLFREDVTSKERKELVIFIQPMVVNDDGSLQRASL 839 Query: 429 RPDDHYSVEDDAKAFFFNRV 448 R D V +DA F +RV Sbjct: 840 REDLRTKVGEDAYKVFPDRV 859 >gi|110643624|ref|YP_671354.1| outer membrane porin HofQ [Escherichia coli 536] gi|191171563|ref|ZP_03033111.1| protein transporter HofQ [Escherichia coli F11] gi|215488672|ref|YP_002331103.1| outer membrane porin HofQ [Escherichia coli O127:H6 str. E2348/69] gi|331649187|ref|ZP_08350273.1| protein transport protein HofQ [Escherichia coli M605] gi|110345216|gb|ABG71453.1| protein transport protein HofQ precursor [Escherichia coli 536] gi|190908190|gb|EDV67781.1| protein transporter HofQ [Escherichia coli F11] gi|215266744|emb|CAS11183.1| predicted fimbrial transporter [Escherichia coli O127:H6 str. E2348/69] gi|281180422|dbj|BAI56752.1| putative transport protein [Escherichia coli SE15] gi|331041685|gb|EGI13829.1| protein transport protein HofQ [Escherichia coli M605] Length = 412 Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|26249985|ref|NP_756025.1| outer membrane porin HofQ [Escherichia coli CFT073] gi|227883521|ref|ZP_04001326.1| competence protein E [Escherichia coli 83972] gi|26110414|gb|AAN82599.1|AE016768_17 Protein transport protein hofQ precursor [Escherichia coli CFT073] gi|227839400|gb|EEJ49866.1| competence protein E [Escherichia coli 83972] Length = 412 Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|300974788|ref|ZP_07172732.1| type IV pilus secretin PilQ [Escherichia coli MS 45-1] gi|301050407|ref|ZP_07197293.1| type IV pilus secretin PilQ [Escherichia coli MS 185-1] gi|300297875|gb|EFJ54260.1| type IV pilus secretin PilQ [Escherichia coli MS 185-1] gi|300410491|gb|EFJ94029.1| type IV pilus secretin PilQ [Escherichia coli MS 45-1] gi|315291661|gb|EFU51017.1| type IV pilus secretin PilQ [Escherichia coli MS 153-1] Length = 386 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|312968303|ref|ZP_07782513.1| transport protein hofQ [Escherichia coli 2362-75] gi|312287128|gb|EFR15038.1| transport protein hofQ [Escherichia coli 2362-75] Length = 386 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|300987128|ref|ZP_07178014.1| type IV pilus secretin PilQ [Escherichia coli MS 200-1] gi|300306272|gb|EFJ60792.1| type IV pilus secretin PilQ [Escherichia coli MS 200-1] gi|323189024|gb|EFZ74308.1| transport protein hofQ [Escherichia coli RN587/1] gi|324009420|gb|EGB78639.1| type IV pilus secretin PilQ [Escherichia coli MS 57-2] gi|324014615|gb|EGB83834.1| type IV pilus secretin PilQ [Escherichia coli MS 60-1] gi|330909424|gb|EGH37938.1| type 4 pilus biogenesis protein PilQ [Escherichia coli AA86] Length = 386 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|315295914|gb|EFU55227.1| type IV pilus secretin PilQ [Escherichia coli MS 16-3] Length = 386 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|255020086|ref|ZP_05292157.1| type II and III secretion system protein [Acidithiobacillus caldus ATCC 51756] gi|254970448|gb|EET27939.1| type II and III secretion system protein [Acidithiobacillus caldus ATCC 51756] Length = 502 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 47/291 (16%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----FVSEGGDF--- 245 E V L V I E+R+ +L+ G S GP +F DF G V G D Sbjct: 161 EKMVWLDVNILEIRKSVLENFGVDWS--KQIPGPFAAFGKDFVGPRNVATVPLGQDLTQP 218 Query: 246 --------------SVKGVLDRFSF-----------------ETVLHALERATAIRTLAE 274 S+ G +D + T+ AL A +A Sbjct: 219 PVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAY-LIAN 277 Query: 275 PTLTAISGQSASFTSGGQ-HLYKTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 P L+A SG F +GGQ + + +++ A +VT DYG+ L F P V + +R+ Sbjct: 278 PQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRV 337 Query: 333 QTEVSE--PV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 +VS+ P + +N +P + R+++ + + G T+V++GL+ + +P L Sbjct: 338 LADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWL 397 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 IPILG LF+++ F T++ I TP +V ++ ++ + ++D+ Sbjct: 398 GDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDE 448 >gi|331654967|ref|ZP_08355966.1| protein transport protein HofQ [Escherichia coli M718] gi|331046982|gb|EGI19060.1| protein transport protein HofQ [Escherichia coli M718] Length = 412 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|170681657|ref|YP_001745634.1| outer membrane porin HofQ [Escherichia coli SMS-3-5] gi|170519375|gb|ACB17553.1| protein transporter HofQ [Escherichia coli SMS-3-5] Length = 412 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|310777966|ref|YP_003966299.1| type II and III secretion system protein [Ilyobacter polytropus DSM 2926] gi|309747289|gb|ADO81951.1| type II and III secretion system protein [Ilyobacter polytropus DSM 2926] Length = 554 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 9/179 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---VSSSTGATSVTTH-- 310 F V + LA+P +T ++G+ A+ + YK VS S ATS + Sbjct: 321 FSAVYRNVVEDNTTEILAKPVITTLNGKKATIELTEEVPYKELEYVSDSGDATSTSYEFK 380 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 D G+ L TP + G I + + E+SE V G +P RK +T V + +G T+ + Sbjct: 381 DVGITLEVTPVITDDGMIKIEVTPEISE-VTGYTDDGVPYVSSRKVETNVIVRNGQTLAI 439 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 GL+KD P LSKIPILG LF++S + +T + I TP K + RD+S+ Sbjct: 440 GGLIKDTKSTTDTKDPYLSKIPILGYLFKSSSNEKSKTNLMIFITP---KIIMSRDMSQ 495 >gi|293416792|ref|ZP_06659429.1| transporter HofQ [Escherichia coli B185] gi|291431368|gb|EFF04353.1| transporter HofQ [Escherichia coli B185] Length = 412 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|306816271|ref|ZP_07450409.1| outer membrane porin HofQ [Escherichia coli NC101] gi|222035093|emb|CAP77838.1| Protein transport protein hofQ [Escherichia coli LF82] gi|305850667|gb|EFM51124.1| outer membrane porin HofQ [Escherichia coli NC101] gi|307628452|gb|ADN72756.1| outer membrane porin HofQ [Escherichia coli UM146] gi|315286025|gb|EFU45463.1| type IV pilus secretin PilQ [Escherichia coli MS 110-3] Length = 386 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|213585294|ref|ZP_03367120.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 412 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +G Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGT 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 409 >gi|218706981|ref|YP_002414500.1| outer membrane porin HofQ [Escherichia coli UMN026] gi|293406969|ref|ZP_06650893.1| hofQ [Escherichia coli FVEC1412] gi|298382711|ref|ZP_06992306.1| hofQ [Escherichia coli FVEC1302] gi|218434078|emb|CAR14995.1| fimbrial transporter [Escherichia coli UMN026] gi|291425780|gb|EFE98814.1| hofQ [Escherichia coli FVEC1412] gi|298276547|gb|EFI18065.1| hofQ [Escherichia coli FVEC1302] Length = 412 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|300898927|ref|ZP_07117225.1| type IV pilus secretin PilQ [Escherichia coli MS 198-1] gi|300357442|gb|EFJ73312.1| type IV pilus secretin PilQ [Escherichia coli MS 198-1] Length = 386 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|218702134|ref|YP_002409763.1| outer membrane porin HofQ [Escherichia coli IAI39] gi|331664993|ref|ZP_08365894.1| protein transport protein HofQ [Escherichia coli TA143] gi|218372120|emb|CAR19982.1| fimbrial transporter [Escherichia coli IAI39] gi|331057503|gb|EGI29489.1| protein transport protein HofQ [Escherichia coli TA143] Length = 412 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|229577502|ref|YP_001178510.2| outer membrane porin HofQ [Enterobacter sp. 638] Length = 413 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248 QV L+ I + L+++G + ++ +++ A G+ + G D SV Sbjct: 181 QVQLEAHIVTINEKSLRELGVKWNL-------AEAQGAGAPGQVTTMGADLSVANATTHV 233 Query: 249 ----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 G +D + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 234 GFNIGRIDGRLLDLELSALEQKQQLEIIASPRLLASHMQPASIKQGSEIPYQVSSGDSGA 293 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TP VL GR+ L+++ + P V+ G+ + ++ +T VE+ Sbjct: 294 TSVEFKEAVLGMEVTPVVLPNGRVRLKLRISENMPGQVLQQADGETLAIDKQEIETQVEV 353 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +P L +P+LG FR+ + E E+ + TP L+ Sbjct: 354 KSGETLALGGIFSQKNKTASDSVPGLGHVPLLGQFFRHDGKDNERRELVVFITPRLI 410 >gi|301019596|ref|ZP_07183756.1| type IV pilus secretin PilQ [Escherichia coli MS 69-1] gi|300399184|gb|EFJ82722.1| type IV pilus secretin PilQ [Escherichia coli MS 69-1] Length = 386 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|307555474|gb|ADN48249.1| protein transport protein HofQ precursor [Escherichia coli ABU 83972] Length = 377 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 145 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 197 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 198 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 257 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 258 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 317 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 318 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 374 >gi|220932698|ref|YP_002509606.1| type II and III secretion system protein [Halothermothrix orenii H 168] gi|219994008|gb|ACL70611.1| type II and III secretion system protein [Halothermothrix orenii H 168] Length = 602 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 11/205 (5%) Query: 225 GPSKSFAADFGGK----FVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTA 279 P ++ G+ F + G + K VLD F + AL + A P +T Sbjct: 378 NPVIKLGMEYDGEEELLFDTSMGKLTYKSVLDLPDDFYLKIEALVTEGLLTVKARPNITT 437 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTH---DYGVVLHFTPTVLSPGRIGLRIQTEV 336 ++GQ A G YK + T + + GV L TP V S G I L+++ +V Sbjct: 438 LNGQQAMIDVGTVQYYKVKQTDGEGNEETQYQSINAGVSLTVTPWVSSSGEITLKLRPQV 497 Query: 337 SEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S IG A + P R+ DTTV + G T+V+ GL++D +P L+ IP++G Sbjct: 498 SN--IGAAAAEGPPQVSRREVDTTVRVKDGQTVVIGGLIQDVGTNTTSKVPFLANIPLIG 555 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 LF++ N +TE+ I TP ++K Sbjct: 556 KLFKSRNNNVNQTELIIFITPRVLK 580 >gi|146338379|ref|YP_001203427.1| putative general secretion pathway protein D [Bradyrhizobium sp. ORS278] gi|146191185|emb|CAL75190.1| Putative general secretion pathway protein D [Bradyrhizobium sp. ORS278] Length = 780 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 13/186 (6%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDY--- 312 +L AL T ++ L+ P+L I Q+A+ G Q T S++ T T V T DY Sbjct: 578 ILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQVPVSTGSATVLTTNNTVVNTIDYRNT 637 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G++L P V G + L I+ E+S P+ RK ++V + SG T++LAG Sbjct: 638 GIILRVAPRVNENGNVRLEIEQEISNVSPQTANSLTPTVAQRKVKSSVAVASGQTVLLAG 697 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L+ + Q + G+P + +IP G LF N+ +R TE+ I ++P +RD + D Sbjct: 698 LISETHQGTRTGLPGVDQIPGFGDLFSNNDRSRGRTELII-----FIRPQIIRDGT--DA 750 Query: 433 HYSVED 438 HY E+ Sbjct: 751 HYVAEE 756 >gi|297519102|ref|ZP_06937488.1| outer membrane porin HofQ [Escherichia coli OP50] gi|300907468|ref|ZP_07125113.1| type IV pilus secretin PilQ [Escherichia coli MS 84-1] gi|300931080|ref|ZP_07146434.1| type IV pilus secretin PilQ [Escherichia coli MS 187-1] gi|301302267|ref|ZP_07208399.1| type IV pilus secretin PilQ [Escherichia coli MS 124-1] gi|300400806|gb|EFJ84344.1| type IV pilus secretin PilQ [Escherichia coli MS 84-1] gi|300461100|gb|EFK24593.1| type IV pilus secretin PilQ [Escherichia coli MS 187-1] gi|300842430|gb|EFK70190.1| type IV pilus secretin PilQ [Escherichia coli MS 124-1] gi|315255979|gb|EFU35947.1| type IV pilus secretin PilQ [Escherichia coli MS 85-1] gi|320199559|gb|EFW74149.1| Type IV pilus biogenesis protein PilQ [Escherichia coli EC4100B] gi|323154220|gb|EFZ40423.1| transport protein hofQ [Escherichia coli EPECa14] gi|323162775|gb|EFZ48612.1| transport protein hofQ [Escherichia coli E128010] Length = 386 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|323966201|gb|EGB61637.1| type IV pilus secretin PilQ [Escherichia coli M863] Length = 412 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|294793490|ref|ZP_06758627.1| bacterial type II and III secretion system protein [Veillonella sp. 3_1_44] gi|294455060|gb|EFG23432.1| bacterial type II and III secretion system protein [Veillonella sp. 3_1_44] Length = 412 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 20/226 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGV 250 QV L+ TI + + K+ GF+ S +TG + S+ A FG E F VK Sbjct: 192 QVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPE 251 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT- 309 L +E + +A+P++ A++G++A G + S G +T Sbjct: 252 LS---------LMESSGKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTR 302 Query: 310 -HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGG 366 + G+ L++TP + + + +I EVS P++ +M +Y++ R+A T V L G Sbjct: 303 YEEVGIKLNYTPIITADDGVDAKIHAEVSTPIM---VSEMKAYKISTRQAHTRVRLQPGE 359 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +V+ GL+ + Q + IP+L IP+LG LFR+SR ++ E+ + Sbjct: 360 VLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDSIEMLM 405 >gi|325498932|gb|EGC96791.1| outer membrane porin HofQ [Escherichia fergusonii ECD227] Length = 385 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + + + G + ++D + F++ + Sbjct: 153 QVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTTLSSDLAVATATTQVGFNIGRI 212 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 213 NGRL-LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 271 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GRI L++ + P V+ + G++ + ++ +T VE+ SG T+ Sbjct: 272 EAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGEVLTIDKQEIETQVEVKSGETL 331 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + K+ IPLL IP LG LF + E E+ + TP LV Sbjct: 332 ALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENERRELVVFITPRLV 382 >gi|300937316|ref|ZP_07152157.1| type IV pilus secretin PilQ [Escherichia coli MS 21-1] gi|300457639|gb|EFK21132.1| type IV pilus secretin PilQ [Escherichia coli MS 21-1] Length = 386 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|145298443|ref|YP_001141284.1| S-protein secretion component D [Aeromonas salmonicida subsp. salmonicida A449] gi|142851215|gb|ABO89536.1| S-protein secretion component D [Aeromonas salmonicida subsp. salmonicida A449] Length = 719 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 110/238 (46%), Gaps = 29/238 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 QV L+ IAEV+ +GF+ + ITG +SG + + G+ ++ G Sbjct: 464 QVLLQAVIAEVKLTNDSSLGFEWNVNKGDITGGTSG------------LIQQTGNLNLAG 511 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---- 305 V + + AL A + L+ P L + ++AS G Q + KT S G++ Sbjct: 512 VFGDVTAK-FAAALSEGNA-KVLSSPRLVVLDQETASIKIGDQIVVKTGEISNGSSGNDP 569 Query: 306 SVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 VTT D G+ L TP++ G I + I E+S + GD P R + + Sbjct: 570 QVTTSYKYIDTGLSLEITPSINDDGLIEMVISQEISS--VSAGGGDTPPINRRAVQSKLL 627 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L GLL +E +PLL IP+LG LF+ E+TE+ + TP+++ Sbjct: 628 ADSGKTVYLGGLLSQSNTNNEEKVPLLGDIPLLGNLFKYQTKKIEKTELVLLITPYVI 685 >gi|145597786|ref|YP_001161862.1| outer membrane secretin family protein [Yersinia pestis Pestoides F] gi|229837374|ref|ZP_04457537.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|145209482|gb|ABP38889.1| outer membrane secretin family protein [Yersinia pestis Pestoides F] gi|229705497|gb|EEO91507.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] Length = 149 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 49/126 (38%), Positives = 75/126 (59%), Gaps = 6/126 (4%) Query: 327 RIGLRIQTEVS--EPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 RI + + EVS + V + GD PS R+RKA+TTVEL G + +L GL+ ++ + Sbjct: 6 RIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLK 65 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 IP + +P+LGALFRN++ R ++E+ + AT LVKPV+ R + PD ++ + Sbjct: 66 KIPFIGDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTVER--- 122 Query: 444 FFNRVN 449 FFN N Sbjct: 123 FFNLTN 128 >gi|206575908|ref|YP_002236236.1| protein transporter HofQ [Klebsiella pneumoniae 342] gi|206564966|gb|ACI06742.1| protein transporter HofQ [Klebsiella pneumoniae 342] Length = 413 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSK--SFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + + TG S G + + ++D S F++ G Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAETGGSPGSGQITTLSSDMSVNDASTRAGFNI-GK 239 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ E L ALER + +A P L A Q AS G + Y+ S +GATSV Sbjct: 240 INGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 299 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GR+ L+++ + P V+ + G+ + ++ +T VE+ SG T+ Sbjct: 300 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETL 359 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 360 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410 >gi|297570196|ref|YP_003691540.1| general secretion pathway protein D [Desulfurivibrio alkaliphilus AHT2] gi|296926111|gb|ADH86921.1| general secretion pathway protein D [Desulfurivibrio alkaliphilus AHT2] Length = 690 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 110/228 (48%), Gaps = 26/228 (11%) Query: 214 GFQHSITGSSSGPSKSFAADFG-GKFVSEGGDFS-VKGVLDR--FSFETVLHALERATAI 269 G S++G ++G S AA G G F G FS +L R FSF +++AL R Sbjct: 397 GSGASMSGIAAGDEGSIAALAGLGGF--NMGVFSGSTEILGREFFSFGALVNALARDGDT 454 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPT 321 L+ P+L + Q A G + T S + GAT +V D G+ L P Sbjct: 455 NILSTPSLVTMDNQEAEIIVGQNVPFLTGSFTEGATGVGGSPFQTVERRDVGIKLRVKPQ 514 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADTTVELPSGGTIVLAGLLKDDI 378 V I L+I+ EVS V D+ + V R +T+V + G +VL GL+ DD+ Sbjct: 515 VTEGDVIRLQIEQEVSS----VERDDLAAGLVTNTRNINTSVLVEDGKVLVLGGLISDDV 570 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 Q+ +PLL IP+ GALFR++R R + + + ++PV +RD Sbjct: 571 QETVSKVPLLGDIPLFGALFRHTRSERSKRNLMV-----FLRPVILRD 613 >gi|195934879|ref|ZP_03080261.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. EC4024] gi|320191599|gb|EFW66249.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7 str. EC1212] gi|326337648|gb|EGD61483.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7 str. 1044] gi|326344601|gb|EGD68350.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7 str. 1125] Length = 386 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|331685028|ref|ZP_08385614.1| protein transport protein HofQ [Escherichia coli H299] gi|331077399|gb|EGI48611.1| protein transport protein HofQ [Escherichia coli H299] Length = 412 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTALGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|327251020|gb|EGE62713.1| transport protein hofQ [Escherichia coli STEC_7v] Length = 386 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|193061725|ref|ZP_03042822.1| protein transporter HofQ [Escherichia coli E22] gi|193068780|ref|ZP_03049740.1| protein transporter HofQ [Escherichia coli E110019] gi|194427057|ref|ZP_03059609.1| protein transporter HofQ [Escherichia coli B171] gi|194435813|ref|ZP_03067916.1| protein transporter HofQ [Escherichia coli 101-1] gi|253771782|ref|YP_003034613.1| outer membrane porin HofQ [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163319|ref|YP_003046427.1| outer membrane porin HofQ [Escherichia coli B str. REL606] gi|256020735|ref|ZP_05434600.1| outer membrane porin HofQ [Shigella sp. D9] gi|260846175|ref|YP_003223953.1| putative fimbrial transporter HofQ [Escherichia coli O103:H2 str. 12009] gi|260857498|ref|YP_003231389.1| putative fimbrial transporter HofQ [Escherichia coli O26:H11 str. 11368] gi|260870117|ref|YP_003236519.1| putative fimbrial transporter HofQ [Escherichia coli O111:H- str. 11128] gi|332281935|ref|ZP_08394348.1| outer membrane porin HofQ [Shigella sp. D9] gi|192932515|gb|EDV85112.1| protein transporter HofQ [Escherichia coli E22] gi|192957856|gb|EDV88299.1| protein transporter HofQ [Escherichia coli E110019] gi|194415018|gb|EDX31288.1| protein transporter HofQ [Escherichia coli B171] gi|194425356|gb|EDX41340.1| protein transporter HofQ [Escherichia coli 101-1] gi|242378917|emb|CAQ33712.1| protein involved in utilization of DNA as a carbon source [Escherichia coli BL21(DE3)] gi|253322826|gb|ACT27428.1| type IV pilus secretin PilQ [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975220|gb|ACT40891.1| predicted fimbrial transporter [Escherichia coli B str. REL606] gi|253979376|gb|ACT45046.1| predicted fimbrial transporter [Escherichia coli BL21(DE3)] gi|257756147|dbj|BAI27649.1| predicted fimbrial transporter HofQ [Escherichia coli O26:H11 str. 11368] gi|257761322|dbj|BAI32819.1| predicted fimbrial transporter HofQ [Escherichia coli O103:H2 str. 12009] gi|257766473|dbj|BAI37968.1| predicted fimbrial transporter HofQ [Escherichia coli O111:H- str. 11128] gi|323376744|gb|ADX49012.1| type IV pilus secretin PilQ [Escherichia coli KO11] gi|323959609|gb|EGB55261.1| type IV pilus secretin PilQ [Escherichia coli H489] gi|323969989|gb|EGB65264.1| type IV pilus secretin PilQ [Escherichia coli TA007] gi|332104287|gb|EGJ07633.1| outer membrane porin HofQ [Shigella sp. D9] Length = 412 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|323974808|gb|EGB69920.1| type IV pilus secretin PilQ [Escherichia coli TW10509] Length = 412 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|300822816|ref|ZP_07102952.1| type IV pilus secretin PilQ [Escherichia coli MS 119-7] gi|300524582|gb|EFK45651.1| type IV pilus secretin PilQ [Escherichia coli MS 119-7] gi|324018703|gb|EGB87922.1| type IV pilus secretin PilQ [Escherichia coli MS 117-3] gi|332996422|gb|EGK16049.1| transport protein hofQ [Shigella flexneri VA-6] gi|332996664|gb|EGK16289.1| transport protein hofQ [Shigella flexneri K-272] Length = 386 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|188492932|ref|ZP_03000202.1| protein transporter HofQ [Escherichia coli 53638] gi|188488131|gb|EDU63234.1| protein transporter HofQ [Escherichia coli 53638] Length = 412 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|332345342|gb|AEE58676.1| transport protein PilQ [Escherichia coli UMNK88] Length = 386 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|324111701|gb|EGC05681.1| type IV pilus secretin PilQ [Escherichia fergusonii B253] Length = 412 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + + + G + ++D + F++ + Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTTLSSDLAVATATTQVGFNIGRI 239 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 240 NGRL-LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 298 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GRI L++ + P V+ + G++ + ++ +T VE+ SG T+ Sbjct: 299 EAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGEVLTIDKQEIETQVEVKSGETL 358 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + K+ IPLL IP LG LF + E E+ + TP LV Sbjct: 359 ALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENERRELVVFITPRLV 409 >gi|320175756|gb|EFW50842.1| Type IV pilus biogenesis protein PilQ [Shigella dysenteriae CDC 74-1112] Length = 386 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFITPRLV 383 >gi|293412807|ref|ZP_06655475.1| conserved hypothetical protein [Escherichia coli B354] gi|291468454|gb|EFF10947.1| conserved hypothetical protein [Escherichia coli B354] Length = 412 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|15803894|ref|NP_289930.1| outer membrane porin HofQ [Escherichia coli O157:H7 EDL933] gi|15833487|ref|NP_312260.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. Sakai] gi|168747135|ref|ZP_02772157.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113] gi|168753140|ref|ZP_02778147.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401] gi|168759412|ref|ZP_02784419.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501] gi|168765735|ref|ZP_02790742.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486] gi|168772721|ref|ZP_02797728.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196] gi|168779471|ref|ZP_02804478.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076] gi|168785192|ref|ZP_02810199.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC869] gi|168797158|ref|ZP_02822165.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC508] gi|208807105|ref|ZP_03249442.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206] gi|208814350|ref|ZP_03255679.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045] gi|208821093|ref|ZP_03261413.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042] gi|209400800|ref|YP_002272825.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115] gi|217324393|ref|ZP_03440477.1| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588] gi|254795305|ref|YP_003080142.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. TW14359] gi|261224673|ref|ZP_05938954.1| predicted fimbrial transporter [Escherichia coli O157:H7 str. FRIK2000] gi|261254432|ref|ZP_05946965.1| predicted fimbrial transporter [Escherichia coli O157:H7 str. FRIK966] gi|291284727|ref|YP_003501545.1| putative fimbrial transporter [Escherichia coli O55:H7 str. CB9615] gi|12518014|gb|AAG58491.1|AE005561_4 putative transport portein [Escherichia coli O157:H7 str. EDL933] gi|13363707|dbj|BAB37656.1| putative transport portein [Escherichia coli O157:H7 str. Sakai] gi|187771720|gb|EDU35564.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196] gi|188018292|gb|EDU56414.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113] gi|189002616|gb|EDU71602.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076] gi|189359008|gb|EDU77427.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401] gi|189364497|gb|EDU82916.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486] gi|189369829|gb|EDU88245.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501] gi|189374266|gb|EDU92682.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC869] gi|189380180|gb|EDU98596.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC508] gi|208726906|gb|EDZ76507.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206] gi|208735627|gb|EDZ84314.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045] gi|208741216|gb|EDZ88898.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042] gi|209162200|gb|ACI39633.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115] gi|209756640|gb|ACI76632.1| putative transport protein [Escherichia coli] gi|209756642|gb|ACI76633.1| putative transport protein [Escherichia coli] gi|209756644|gb|ACI76634.1| putative transport protein [Escherichia coli] gi|209756646|gb|ACI76635.1| putative transport protein [Escherichia coli] gi|217320614|gb|EEC29038.1| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588] gi|254594705|gb|ACT74066.1| predicted fimbrial transporter [Escherichia coli O157:H7 str. TW14359] gi|290764600|gb|ADD58561.1| predicted fimbrial transporter [Escherichia coli O55:H7 str. CB9615] gi|320639673|gb|EFX09267.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. G5101] gi|320655674|gb|EFX23597.1| outer membrane porin HofQ [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661459|gb|EFX28874.1| outer membrane porin HofQ [Escherichia coli O55:H7 str. USDA 5905] gi|320666481|gb|EFX33464.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. LSU-61] Length = 412 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|323174021|gb|EFZ59649.1| transport protein hofQ [Escherichia coli LT-68] Length = 386 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|307311947|ref|ZP_07591585.1| type IV pilus secretin PilQ [Escherichia coli W] gi|306908091|gb|EFN38591.1| type IV pilus secretin PilQ [Escherichia coli W] gi|315062668|gb|ADT76995.1| dsDNA transporter subunit [Escherichia coli W] Length = 402 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 170 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 222 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 223 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 282 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 283 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 342 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 343 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 399 >gi|284923383|emb|CBG36477.1| protein transport protein [Escherichia coli 042] Length = 386 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|218550647|ref|YP_002384438.1| outer membrane porin HofQ [Escherichia fergusonii ATCC 35469] gi|218358188|emb|CAQ90835.1| fimbrial transporter [Escherichia fergusonii ATCC 35469] Length = 426 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + + + G + ++D + F++ + Sbjct: 194 QVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTTLSSDLAVATATTQVGFNIGRI 253 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 254 NGRL-LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 312 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GRI L++ + P V+ + G++ + ++ +T VE+ SG T+ Sbjct: 313 EAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGEVLTIDKQEIETQVEVKSGETL 372 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + K+ IPLL IP LG LF + E E+ + TP LV Sbjct: 373 ALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENERRELVVFITPRLV 423 >gi|300815414|ref|ZP_07095639.1| type IV pilus secretin PilQ [Escherichia coli MS 107-1] gi|300919331|ref|ZP_07135842.1| type IV pilus secretin PilQ [Escherichia coli MS 115-1] gi|300926924|ref|ZP_07142688.1| type IV pilus secretin PilQ [Escherichia coli MS 182-1] gi|300946869|ref|ZP_07161109.1| type IV pilus secretin PilQ [Escherichia coli MS 116-1] gi|300956717|ref|ZP_07168988.1| type IV pilus secretin PilQ [Escherichia coli MS 175-1] gi|301329693|ref|ZP_07222442.1| type IV pilus secretin PilQ [Escherichia coli MS 78-1] gi|301645828|ref|ZP_07245743.1| type IV pilus secretin PilQ [Escherichia coli MS 146-1] gi|309794656|ref|ZP_07689078.1| type IV pilus secretin PilQ [Escherichia coli MS 145-7] gi|110616771|gb|ABF05438.1| putative transport portein [Shigella flexneri 5 str. 8401] gi|300316473|gb|EFJ66257.1| type IV pilus secretin PilQ [Escherichia coli MS 175-1] gi|300413587|gb|EFJ96897.1| type IV pilus secretin PilQ [Escherichia coli MS 115-1] gi|300417082|gb|EFK00393.1| type IV pilus secretin PilQ [Escherichia coli MS 182-1] gi|300453478|gb|EFK17098.1| type IV pilus secretin PilQ [Escherichia coli MS 116-1] gi|300532306|gb|EFK53368.1| type IV pilus secretin PilQ [Escherichia coli MS 107-1] gi|300844205|gb|EFK71965.1| type IV pilus secretin PilQ [Escherichia coli MS 78-1] gi|301075906|gb|EFK90712.1| type IV pilus secretin PilQ [Escherichia coli MS 146-1] gi|308121706|gb|EFO58968.1| type IV pilus secretin PilQ [Escherichia coli MS 145-7] gi|315619010|gb|EFU99593.1| transport protein hofQ [Escherichia coli 3431] gi|320181878|gb|EFW56784.1| Type IV pilus biogenesis protein PilQ [Shigella boydii ATCC 9905] gi|323182850|gb|EFZ68251.1| transport protein hofQ [Escherichia coli 1357] gi|332085536|gb|EGI90702.1| transport protein hofQ [Shigella boydii 5216-82] Length = 386 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|120612787|ref|YP_972465.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1] gi|120591251|gb|ABM34691.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1] Length = 829 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 32/252 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------ 242 QV ++ +I EV D Q G Q + +++GPS A G+ ++ G Sbjct: 537 QVLIEASIVEVTLDDTLQYGLQWAF--NNAGPSNLNGA---GQLLTNGPSDKTPIGSSIP 591 Query: 243 ----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297 FS S VL+AL ++ ++ P+L + +A + G Q KT Sbjct: 592 TPTSSGFSYALSNSLGSVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTG 651 Query: 298 --VSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--- 348 ++S +G SV D GV L TP+V + + ++I V++ + N+G + Sbjct: 652 SLITSVSGGNSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTD-AVADNSGSISLQ 710 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P ++ R+ + V + SG IVL GL++D K G+PLL IP++G+LF N+ T Sbjct: 711 PVFQQRQITSKVAVRSGEAIVLGGLIRDTSNSSKSGVPLLQDIPLVGSLFSNNGKTGNRT 770 Query: 409 EIFIAATPFLVK 420 E+ + TP +V+ Sbjct: 771 ELLVVITPKVVR 782 >gi|301023148|ref|ZP_07186952.1| type IV pilus secretin PilQ [Escherichia coli MS 196-1] gi|299880971|gb|EFI89182.1| type IV pilus secretin PilQ [Escherichia coli MS 196-1] Length = 389 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 157 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 209 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 210 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 269 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 270 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 329 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 330 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 386 >gi|187731764|ref|YP_001882066.1| outer membrane porin HofQ [Shigella boydii CDC 3083-94] gi|187428756|gb|ACD08030.1| protein transporter HofQ [Shigella boydii CDC 3083-94] Length = 412 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFITPRLV 409 >gi|209920843|ref|YP_002294927.1| outer membrane porin HofQ [Escherichia coli SE11] gi|218697071|ref|YP_002404738.1| outer membrane porin HofQ [Escherichia coli 55989] gi|331670209|ref|ZP_08371048.1| protein transport protein HofQ [Escherichia coli TA271] gi|331679451|ref|ZP_08380121.1| protein transport protein HofQ [Escherichia coli H591] gi|209914102|dbj|BAG79176.1| putative transport protein [Escherichia coli SE11] gi|218353803|emb|CAV00141.1| fimbrial transporter [Escherichia coli 55989] gi|323944387|gb|EGB40462.1| type IV pilus secretin PilQ [Escherichia coli H120] gi|324116416|gb|EGC10335.1| type IV pilus secretin PilQ [Escherichia coli E1167] gi|331062271|gb|EGI34191.1| protein transport protein HofQ [Escherichia coli TA271] gi|331072623|gb|EGI43948.1| protein transport protein HofQ [Escherichia coli H591] Length = 412 Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|320197345|gb|EFW71960.1| Type IV pilus biogenesis protein PilQ [Escherichia coli WV_060327] Length = 386 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTALGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|333013071|gb|EGK32447.1| transport protein hofQ [Shigella flexneri K-227] Length = 386 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|323164950|gb|EFZ50741.1| transport protein hofQ [Shigella sonnei 53G] Length = 385 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 153 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 205 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 206 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 265 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 266 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 325 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 326 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 382 >gi|289675697|ref|ZP_06496587.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 137 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 4/137 (2%) Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L++ Sbjct: 1 ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 60 Query: 333 QTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 EVSE I + +P+ +R+ DT++ L G + V++GL+ + P L Sbjct: 61 APEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGL 120 Query: 389 SKIPILGALFRNSRFNR 405 IPILGA FR+S+ R Sbjct: 121 GDIPILGAFFRSSQIQR 137 >gi|16131268|ref|NP_417850.1| protein required for the utilization of DNA as a carbon source; fimbrial transporter homolog [Escherichia coli str. K-12 substr. MG1655] gi|74313896|ref|YP_312315.1| outer membrane porin HofQ [Shigella sonnei Ss046] gi|89110619|ref|AP_004399.1| predicted fimbrial transporter [Escherichia coli str. K-12 substr. W3110] gi|157158971|ref|YP_001464845.1| outer membrane porin HofQ [Escherichia coli E24377A] gi|170082908|ref|YP_001732228.1| fimbrial transporter [Escherichia coli str. K-12 substr. DH10B] gi|218555936|ref|YP_002388849.1| outer membrane porin HofQ [Escherichia coli IAI1] gi|229774932|ref|YP_690743.2| outer membrane porin HofQ [Shigella flexneri 5 str. 8401] gi|238902482|ref|YP_002928278.1| putative fimbrial transporter [Escherichia coli BW2952] gi|256025882|ref|ZP_05439747.1| outer membrane porin HofQ [Escherichia sp. 4_1_40B] gi|293453697|ref|ZP_06664116.1| hofQ [Escherichia coli B088] gi|307140075|ref|ZP_07499431.1| outer membrane porin HofQ [Escherichia coli H736] gi|331644090|ref|ZP_08345219.1| protein transport protein HofQ [Escherichia coli H736] gi|1170332|sp|P34749|HOFQ_ECOLI RecName: Full=Putative DNA transport protein HofQ; Flags: Precursor gi|606325|gb|AAA58188.1| hopQ [Escherichia coli str. K-12 substr. MG1655] gi|1789793|gb|AAC76416.1| protein required for the utilization of DNA as a carbon source; fimbrial transporter homolog [Escherichia coli str. K-12 substr. MG1655] gi|73857373|gb|AAZ90080.1| putative transport portein [Shigella sonnei Ss046] gi|85676650|dbj|BAE77900.1| predicted fimbrial transporter [Escherichia coli str. K12 substr. W3110] gi|157081001|gb|ABV20709.1| protein transporter HofQ [Escherichia coli E24377A] gi|169890743|gb|ACB04450.1| predicted fimbrial transporter [Escherichia coli str. K-12 substr. DH10B] gi|218362704|emb|CAR00330.1| fimbrial transporter [Escherichia coli IAI1] gi|238862385|gb|ACR64383.1| predicted fimbrial transporter [Escherichia coli BW2952] gi|260447590|gb|ACX38012.1| type IV pilus secretin PilQ [Escherichia coli DH1] gi|291321823|gb|EFE61254.1| hofQ [Escherichia coli B088] gi|315137967|dbj|BAJ45126.1| outer membrane porin HofQ [Escherichia coli DH1] gi|323939390|gb|EGB35601.1| type IV pilus secretin PilQ [Escherichia coli E482] gi|331036384|gb|EGI08610.1| protein transport protein HofQ [Escherichia coli H736] Length = 412 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|323179085|gb|EFZ64659.1| transport protein hofQ [Escherichia coli 1180] Length = 377 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 145 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 197 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 198 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 257 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 258 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 317 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 318 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 374 >gi|293393378|ref|ZP_06637690.1| type IV pilus secretin PilQ [Serratia odorifera DSM 4582] gi|291424115|gb|EFE97332.1| type IV pilus secretin PilQ [Serratia odorifera DSM 4582] Length = 411 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 5/232 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +QV L I + R+ L+++G + +T + +F E +V L R Sbjct: 179 EQVQLAAHIVTISREDLRELGVRWGLTADQRAAKRLRIDNFSVGLPLERSAINVGFHLAR 238 Query: 254 FS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 S + L ALE+ A+ +A P L + Q+AS G + Y+ S ++GAT++ Sbjct: 239 VSGRLLDLELMALEQENAVEIIASPRLLTANQQTASIKQGTEIPYEVSSGASGATAIQFR 298 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTI 368 + + + TP +L G I L + + P V G + + K + T V + +G T+ Sbjct: 299 EAVLGMEVTPRILPNGLITLTLHISQNMPGRAVRQGSGEALAIDKQEIKTQVTVKNGETV 358 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 VL G+ + + +P L +P+LG+LF+ S ++ E+ I TP L+K Sbjct: 359 VLGGIFQRQRSHGADKVPGLGDVPLLGSLFKQSSKQHKKRELVIFITPTLIK 410 >gi|197265045|ref|ZP_03165119.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243300|gb|EDY25920.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 426 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ ++ A G + D SV R Sbjct: 194 QVELAAHIVTINEKSLRELGVKWTLADATQ-------AGAVGDVTTLSSDLSVAAATSRV 246 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 247 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 306 Query: 305 TSVTTHDYGVVLHFTPTVLSPG--RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL G R+ L I V V+ G++ + ++ +T VE+ Sbjct: 307 TSVEFKEAVLGMEVTPTVLQKGLIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 366 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 367 KSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 423 >gi|82545746|ref|YP_409693.1| outer membrane porin HofQ [Shigella boydii Sb227] gi|81247157|gb|ABB67865.1| putative transport portein [Shigella boydii Sb227] Length = 412 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFITPRLV 409 >gi|309785870|ref|ZP_07680501.1| transport protein hofQ [Shigella dysenteriae 1617] gi|308926990|gb|EFP72466.1| transport protein hofQ [Shigella dysenteriae 1617] Length = 267 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 35 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHV 87 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 88 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 147 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 148 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 207 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 208 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 264 >gi|238896859|ref|YP_002921604.1| outer membrane porin HofQ [Klebsiella pneumoniae NTUH-K2044] gi|238549186|dbj|BAH65537.1| outer membrane porin [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 414 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + + + S P G+ + D SV R Sbjct: 182 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPG-------SGQITTLSSDVSVNDASTRA 234 Query: 255 SFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F L ALER + +A P L A Q AS G + Y+ S +GA Sbjct: 235 GFNIGKINGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGA 294 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ Sbjct: 295 TSVEFKEAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEV 354 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 355 RSGETLALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 411 >gi|152972270|ref|YP_001337416.1| outer membrane porin HofQ [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957119|gb|ABR79149.1| putative transport portein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 413 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + + + S P G+ + D SV R Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPG-------SGQITTLSSDVSVNDASTRA 233 Query: 255 SFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F L ALER + +A P L A Q AS G + Y+ S +GA Sbjct: 234 GFNIGKINGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGA 293 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ Sbjct: 294 TSVEFKEAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEV 353 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 354 RSGETLALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410 >gi|320186741|gb|EFW61464.1| Type IV pilus biogenesis protein PilQ [Shigella flexneri CDC 796-83] Length = 386 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFITPRLV 383 >gi|330012388|ref|ZP_08307367.1| type IV pilus secretin PilQ [Klebsiella sp. MS 92-3] gi|328533849|gb|EGF60524.1| type IV pilus secretin PilQ [Klebsiella sp. MS 92-3] Length = 408 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + + + S P G+ + D SV R Sbjct: 176 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPG-------SGQITTLSSDVSVNDASTRA 228 Query: 255 SFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F L ALER + +A P L A Q AS G + Y+ S +GA Sbjct: 229 GFNIGKINGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGA 288 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ Sbjct: 289 TSVEFKEAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEV 348 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 349 RSGETLALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 405 >gi|332090365|gb|EGI95463.1| transport protein hofQ [Shigella boydii 3594-74] Length = 385 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 153 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 205 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 206 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 265 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 266 TSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 325 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 326 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFITPRLV 382 >gi|167466375|ref|ZP_02331079.1| putative outer membrane secretin family protein [Yersinia pestis FV-1] Length = 140 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 6/118 (5%) Query: 335 EVS--EPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS + V + GD PS R+RKA+TTVEL G + +L GL+ ++ + IP + I Sbjct: 5 EVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDI 64 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 P+LGALFRN++ R ++E+ + AT LVKPV+ R + PD ++ + FFN N Sbjct: 65 PLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTVER---FFNLTN 119 >gi|291086346|ref|ZP_06355526.2| hypothetical protein CIT292_10180 [Citrobacter youngae ATCC 29220] gi|291067951|gb|EFE06060.1| protein transport protein HofQ [Citrobacter youngae ATCC 29220] Length = 386 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKG 249 +QV L I + L+++G + S+ + G + A+D + F++ G Sbjct: 153 EQVELAAHIVTINEKSLRELGVKWSLADAQQPGAVGNVTTLASDLSVSAATSRVGFNI-G 211 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 ++ E L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 212 RINARLLELELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEF 271 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367 + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ SG T Sbjct: 272 KEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGET 331 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I L G+ + + +PLL IP LG+LFR+ E E+ + TP LV Sbjct: 332 IALGGIFSHKNKAAADSVPLLGDIPWLGSLFRHDGKEDERRELVVFITPRLV 383 >gi|188578583|ref|YP_001915512.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523035|gb|ACD60980.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae PXO99A] Length = 766 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 103/232 (44%), Gaps = 38/232 (16%) Query: 228 KSFAADFGGKFVSE-GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 ++ D GK E G ++ G + +++HAL+ T +R L P++ + A+ Sbjct: 531 RNIWGDIAGKITGEKGAQWTFLGK----NAASIIHALDEVTNVRLLQTPSVFVRNNAEAT 586 Query: 287 FTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 G + + S +TG +SV D GV+L P V G + L I EVS P Sbjct: 587 LNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSP- 645 Query: 341 IGVNAGDMPS-----------------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 GD P+ R+ T + SG TI+LAGL+ D Sbjct: 646 -----GDRPAACTSATATVNAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDGSN 700 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434 GIP LSK+P++GALF + N E+ + TP +V+ P R+L+ D Y Sbjct: 701 GIPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVRNPQEARNLT---DEY 749 >gi|58580480|ref|YP_199496.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622438|ref|YP_449810.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58425074|gb|AAW74111.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366378|dbj|BAE67536.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 770 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 103/232 (44%), Gaps = 38/232 (16%) Query: 228 KSFAADFGGKFVSE-GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 ++ D GK E G ++ G + +++HAL+ T +R L P++ + A+ Sbjct: 535 RNIWGDIAGKITGEKGAQWTFLGK----NAASIIHALDEVTNVRLLQTPSVFVRNNAEAT 590 Query: 287 FTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 G + + S +TG +SV D GV+L P V G + L I EVS P Sbjct: 591 LNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSP- 649 Query: 341 IGVNAGDMPS-----------------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 GD P+ R+ T + SG TI+LAGL+ D Sbjct: 650 -----GDRPAACTSATATVNAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDGSN 704 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434 GIP LSK+P++GALF + N E+ + TP +V+ P R+L+ D Y Sbjct: 705 GIPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVRNPQEARNLT---DEY 753 >gi|262045226|ref|ZP_06018252.1| protein transporter HofQ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037436|gb|EEW38681.1| protein transporter HofQ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 331 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + + + S P + ++D S F++ G Sbjct: 99 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNI-GK 157 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ E L ALER + +A P L A Q AS G + Y+ S +GATSV Sbjct: 158 INGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 217 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+ Sbjct: 218 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETL 277 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 278 ALGGIFSQKNKTARDSVPLLDDIPVLGRLFRRDGKDNERRELVVFITPRIL 328 >gi|307247528|ref|ZP_07529573.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856031|gb|EFM88189.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 204 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 9/158 (5%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + LAEP ++ +SG++A GG+ + G SV ++G+ L V RI Sbjct: 6 KILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDRIR 64 Query: 330 LRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEG 384 L + VS + G VN+ +P + R++ +T E+ +G + +++GLL K DI+ +K+ Sbjct: 65 LVLSQSVS-TIAGNYEIVNS-RIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK- 121 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +P+L IPILGA FRN+ +RE E+ + AT LVKPV Sbjct: 122 VPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPV 159 >gi|240141999|ref|YP_002966509.1| putative General secretion protein D [Methylobacterium extorquens AM1] gi|240011943|gb|ACS43168.1| putative General secretion protein D [Methylobacterium extorquens AM1] Length = 693 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 115/243 (47%), Gaps = 18/243 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVS---EGGDFSVKG 249 QV ++ TIAEVR + + G + G S + FG G+ V+ G+ ++ Sbjct: 426 QVLIEATIAEVRLNEALRHGVRWYFQAGGLGQGASMGSGFGTSGRSVTGQGSAGEIALTY 485 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--- 306 L + + + ALE T + ++ P LT + Q+A+ G Q T S+ + + Sbjct: 486 SLGLANAKLAISALESVTDVEIVSSPALTVLDNQTATLKVGEQVPIATRSARSVVNADAP 545 Query: 307 ----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVE 361 + D GV+L TP V + G + L I+ E S+ V + D P+ R+R+ +T+ Sbjct: 546 LVNDIEMKDTGVILQVTPRVNAGGLVMLDIKQEASDVVPTTTSNLDSPTIRLRQITSTIA 605 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + SG IVL G+++ + G+P L IP+LG N ++ TE+ I +++P Sbjct: 606 VKSGAEIVLGGIIQRGRHRGAGGVPFLRDIPLLGTALNNIDSGQDRTELVI-----IIRP 660 Query: 422 VAM 424 M Sbjct: 661 TVM 663 >gi|290512027|ref|ZP_06551395.1| protein transporter HofQ [Klebsiella sp. 1_1_55] gi|289775817|gb|EFD83817.1| protein transporter HofQ [Klebsiella sp. 1_1_55] Length = 413 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + + + P + ++D S F++ G Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAEAGGSPGSGQITTLSSDMSVNDASTRAGFNI-GK 239 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ E L ALER + +A P L A Q AS G + Y+ S +GATSV Sbjct: 240 INGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 299 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GR+ L+++ + P V+ + G+ + ++ +T VE+ SG T+ Sbjct: 300 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETL 359 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 360 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410 >gi|325914232|ref|ZP_08176582.1| General secretion pathway protein D [Xanthomonas vesicatoria ATCC 35937] gi|325539487|gb|EGD11133.1| General secretion pathway protein D [Xanthomonas vesicatoria ATCC 35937] Length = 778 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 37/238 (15%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G ++ ++ D GK S G +S G + ++ AL+ T +R L P++ Sbjct: 538 GLANAAGRNIWGDIAGKVGSGGLAWSFLGK----NAAAIISALDTVTNVRLLQTPSVFVR 593 Query: 281 SGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + A+ G + + S +TG +SV D GV+L P V G + L I Sbjct: 594 NNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQ 653 Query: 335 EVSEPVIGVNAGDMPSY-----------------RVRKADTTVELPSGGTIVLAGLLKDD 377 EVS P GD P+ R+ T + SG TI+LAGL++D Sbjct: 654 EVSSP------GDRPTACASATATVNQAACNVDINTRRIKTEAAIQSGDTIMLAGLIQDS 707 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434 G+P LSK+P+LG+LF N+ +E+ + TP +V+ P+ R+L+ D Y Sbjct: 708 TSDGSAGVPFLSKLPVLGSLFGQKTQNKRRSEVIVLLTPSIVRNPMEARNLT---DEY 762 >gi|289663703|ref|ZP_06485284.1| general secretion pathway protein D [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 768 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 107/239 (44%), Gaps = 39/239 (16%) Query: 221 GSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G +S ++ D GK V EGG +S G + +++AL++ T +R L P++ Sbjct: 527 GLASAAGRNIWGDIAGK-VGEGGLAWSFLGK----NAAAIINALDKVTNVRLLQTPSVFV 581 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + A+ G + + S +TG +SV D GV+L P V G + L I Sbjct: 582 RNNAEATLNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIV 641 Query: 334 TEVSEPVIGVNAGDMPS-----------------YRVRKADTTVELPSGGTIVLAGLLKD 376 EVS P GD P+ R+ T + SG TI+LAGL+ D Sbjct: 642 QEVSSP------GDRPTACQSATATINAAACNVDINTRRVKTEAAVQSGDTIMLAGLIND 695 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434 G+P LSK+P++GALF N E+ + TP +V+ P R+L+ D Y Sbjct: 696 STTDGSNGVPFLSKLPVVGALFGTKSRNSSRREVIVLITPSIVRNPQEARNLT---DEY 751 >gi|288933223|ref|YP_003437282.1| type IV pilus secretin PilQ [Klebsiella variicola At-22] gi|288887952|gb|ADC56270.1| type IV pilus secretin PilQ [Klebsiella variicola At-22] Length = 412 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + + + P + ++D S F++ G Sbjct: 180 QVELAAHIVSMSETSLRELGVKWRLAEAGGSPGSGQITTLSSDMSVNDASTRAGFNI-GK 238 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ E L ALER + +A P L A Q AS G + Y+ S +GATSV Sbjct: 239 INGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 298 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GR+ L+++ + P V+ + G+ + ++ +T VE+ SG T+ Sbjct: 299 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETL 358 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 359 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 409 >gi|319791194|ref|YP_004152834.1| type II and iii secretion system protein [Variovorax paradoxus EPS] gi|315593657|gb|ADU34723.1| type II and III secretion system protein [Variovorax paradoxus EPS] Length = 532 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 1/154 (0%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P L+ SG A F +GG+ +S+ GA SV YGV L+ P G + Sbjct: 327 LASPNLSTRSGGEAKFLAGGEIPLPALSTQ-GAGSVEFKPYGVRLNIKPIADGEGNVSGS 385 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 I TEVS V +P +R+ DT + +G TIVL+GLL + + +G+P L K Sbjct: 386 ILTEVSSIDRSVAVQGIPGLLIRRTDTEFNVKAGETIVLSGLLSRESTRSSDGVPGLRKT 445 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 PI+G FR +E E+ + TP +V P R Sbjct: 446 PIIGRAFRADNDTDKEQEVVVFITPRVVGPADSR 479 >gi|218691667|ref|YP_002399879.1| outer membrane porin HofQ [Escherichia coli ED1a] gi|218429231|emb|CAR10041.1| fimbrial transporter [Escherichia coli ED1a] Length = 412 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 106/237 (44%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQQ-------AGGVGQVTTLGSDLSVATATTHI 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LF + E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFHHDGKEDERRELVVFITPRLV 409 >gi|170698575|ref|ZP_02889644.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] gi|170136509|gb|EDT04768.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] Length = 783 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 28/259 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--HSITGSSSGPSKSFAADFGGKFVS 240 +++NL +IA +V L V + EV L +G Q S++ GP A G Sbjct: 333 RLLNLYDIASP-EVILDVEVLEVNSSDLLNLGIQFPDSVSARMVGP-----AGVAGSMTI 386 Query: 241 EGGDFSVKGVLDRFSFE-------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 GD L+R SF VL+ + + + RTLA P + ++ + AS G + Sbjct: 387 --GDLKH---LNRDSFPLSFPDPLAVLNLRQTSGSTRTLANPRIRVVNHEKASVLIGDKV 441 Query: 294 --LYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGD 347 + TV+ ++ A SV D G+ L P + + +++ EVS V V +A Sbjct: 442 PVITSTVNQTSNAITESVNYLDVGLKLEVEPEIHVDNDVTMKVALEVSNIVKEVRSSATG 501 Query: 348 MPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + +Y++ R A+T + L G T LAGL+K+D Q+ +P L +IP+LG LF N+R Sbjct: 502 LLAYQIGTRNANTVLRLHEGETQALAGLIKNDTQESGTHVPGLGRIPVLGRLFSNNRDTA 561 Query: 406 EETEIFIAATPFLVKPVAM 424 +EI + TP + + +AM Sbjct: 562 TRSEIVLLITPHIARSLAM 580 >gi|291619222|ref|YP_003521964.1| HofQ [Pantoea ananatis LMG 20103] gi|291154252|gb|ADD78836.1| HofQ [Pantoea ananatis LMG 20103] Length = 413 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 5/186 (2%) Query: 244 DFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 D SV L R + L ALE+ + +A P L Q+AS G + Y+ + Sbjct: 225 DVSVGVTLSRIGGKLLDLELSALEQENQVEIIASPRLFTSHQQTASIKQGTEIPYEVSAG 284 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DT 358 ++GATS+ + + + TP VL GRI L+I+ + P V GD + K +T Sbjct: 285 NSGATSIEFKEAVLGMEVTPAVLGNGRIQLKIRISQNVPGRAVQTGDSQVLSIDKQEIET 344 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + G T+ L G+ + + +PLL +P++G+LFR + + E+ I TP L Sbjct: 345 QVTVSDGQTLALGGIFHQQRTRGQRQVPLLGNLPVVGSLFRQHAEEQRKRELVIFMTPRL 404 Query: 419 VKPVAM 424 V+ A+ Sbjct: 405 VREAAL 410 >gi|222083138|ref|YP_002542503.1| general secretion pathway protein D [Agrobacterium radiobacter K84] gi|221727817|gb|ACM30906.1| general secretion pathway protein D [Agrobacterium radiobacter K84] Length = 714 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 13/181 (7%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTG-ATSVTTHDY 312 L+AL T + ++ PTL A++ Q A+ G Q T SS+T +S+ D Sbjct: 505 LNALSSITNVNIVSAPTLMALNNQKATLQVGDQVPIVTQQSASTTSSNTAIVSSIDLKDT 564 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLA 371 GV+L P V S GR+ L IQ EVS V +G D P+ + RK T V + ++ L Sbjct: 565 GVILTVLPRVNSSGRVMLDIQQEVSNVVKTTTSGIDSPTIQQRKLSTKVIVDDNESVALG 624 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL++ +P+L K+PI G F+N +TE+ I +KP +RD+ + Sbjct: 625 GLIQQSNTLNHSQVPILGKMPIFGNAFKNKEDTINKTELII-----FIKPRIVRDVRQAR 679 Query: 432 D 432 D Sbjct: 680 D 680 >gi|283781400|ref|YP_003372155.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283439853|gb|ADB18295.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 854 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 107/240 (44%), Gaps = 13/240 (5%) Query: 227 SKSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 S S D +SEGG +K G LD S + ALE +A P L ++ Q A Sbjct: 376 SGSPLTDLANIDLSEGG---LKLGFLD-ASLAVFIDALETVGDTNVIASPRLMCLNKQRA 431 Query: 286 SFTSGGQ--HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G Q ++ TV+ ++ SV D G +L P + + G I L + E+S + + Sbjct: 432 EIQIGEQLGYVSTTVTENSATQSVNFLDVGTLLRLRPNIANDGLIRLEVHPELSTGTVSI 491 Query: 344 NAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G +P+ V + T V G T++L GL++ D+ IP L +P++G FR Sbjct: 492 EQGLTIPNKTVTQVTTNVMCADGCTVILGGLIRQDLTNNTSQIPFLGSLPLVGPAFRQKT 551 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP-----DDHYSVEDDAKAFFFNRVNKIYGPKEA 457 +E TEI + TP +V + + R +H SV D + F R Y ++A Sbjct: 552 ETQERTEIIVLLTPRIVSEPMLGEEGRKYGNSFTEHQSVYADKMSPFGKRSTGQYHLRKA 611 >gi|191167908|ref|ZP_03029712.1| protein transporter HofQ [Escherichia coli B7A] gi|190902081|gb|EDV61826.1| protein transporter HofQ [Escherichia coli B7A] Length = 412 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G + + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGVVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|163783780|ref|ZP_02178765.1| hypothetical protein HG1285_09976 [Hydrogenivirga sp. 128-5-R1-1] gi|159880969|gb|EDP74488.1| hypothetical protein HG1285_09976 [Hydrogenivirga sp. 128-5-R1-1] Length = 550 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 120/243 (49%), Gaps = 22/243 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFS------- 246 QV ++ I EVR+++++++G S S++ +S++ G V + G + Sbjct: 310 QVKIEARILEVRKEVVRELGINWSALLSNAKVQQSWSGGAGVNLGVGQAGAITPSLSATP 369 Query: 247 --------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 KG L+ + L A ER I++LA+PT+ I+GQ+A G + Y+T Sbjct: 370 GGILTFTYAKGALNALNLR--LSAFERLGKIKSLAKPTIVTINGQNAVIKQGQEIPYQTA 427 Query: 299 SSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 + G++ S+ + + L+ P + GRI L + E+ + + GV P+ ++ Sbjct: 428 VIAGGSSVPSIQFKEAVLELNVLPIISPDGRILLDM--ELKQEIPGVQTPIGPTIIKKQV 485 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V + +G TIV+ G++ + KEG+ L ++PIL LF + ++ E+ I TP Sbjct: 486 STKVIVNNGDTIVIGGIIDSLNRNTKEGVAGLVRVPILKWLFGQESKHIQDIELLIFITP 545 Query: 417 FLV 419 ++ Sbjct: 546 SII 548 >gi|54302290|ref|YP_132283.1| Flp pilus assembly protein [Photobacterium profundum SS9] gi|46915712|emb|CAG22483.1| hypothetical Flp pilus assembly protein [Photobacterium profundum SS9] Length = 296 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 117/261 (44%), Gaps = 31/261 (11%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 ++V + + IS+ NK ++++P + + V +P AD+++ +Y+ GK G NV Sbjct: 28 TNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNKIYVLGKQFGTTNV 87 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I+ + + LD+ + D+ L+ L F+ + I V + +VL G V + Sbjct: 88 IIWDSRDQLITVLDVEVTHDLNALKSKLYEFMPNEKISVYTSQNKLVLSGEVSSADKIAT 147 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 AVE++ TF ++ +++NL+ + G QV L+VT+AEV+R ++++ + + Sbjct: 148 AVEIANTF-----------TADGEIINLMAVGGSHQVMLEVTVAEVQRSLVREFDSKF-V 195 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSV--------------KGVLDRFSFETVLHALER 265 SG A+ G S G G+ F L A Sbjct: 196 FAHQSGNWTWGGANGGASVPSNVGIIDPIIDAAISNPLSIDDNGLFASFLSSNTLFAAAF 255 Query: 266 ATA-----IRTLAEPTLTAIS 281 A + LAEPTLTAIS Sbjct: 256 DIAKTNGLAKVLAEPTLTAIS 276 >gi|238754119|ref|ZP_04615477.1| Protein transporter HofQ [Yersinia ruckeri ATCC 29473] gi|238707615|gb|EEP99974.1| Protein transporter HofQ [Yersinia ruckeri ATCC 29473] Length = 422 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 5/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L I + + L ++G + I SG S +F + + + R Sbjct: 190 QQVQLAAHIVTISSESLHELGVRWGIPARDSGGSALRINNFNVGLPIQNSAITAGFNIAR 249 Query: 254 FSFETV---LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 S + + L ALE+ + +A P LT Q+AS G Y S G T+V Sbjct: 250 ISGQLLDLELSALEQENQVEIIASPRLTTSHQQTASIKQGTDIPYSVSSGKNGGTTVEFK 309 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTI 368 + + + TP +L G+I L+++ + P + + G+ S + K + T + + G TI Sbjct: 310 EAVLGMEVTPRILGAGKITLKLKISQNMPGMAIKRGENESLAIDKQEIKTQITVNDGETI 369 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + +P+LS IP+LG LF+ + + E+ I TP L+ Sbjct: 370 VLGGIFQQKNSRGANKVPVLSDIPLLGHLFKQTVNAKSRRELVIFITPRLI 420 >gi|237728710|ref|ZP_04559191.1| type II secretion system protein [Citrobacter sp. 30_2] gi|226909332|gb|EEH95250.1| type II secretion system protein [Citrobacter sp. 30_2] Length = 415 Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + S+ + G + A+D + F++ + Sbjct: 183 QVELAAHIVTINEKSLRELGVKWSLADAQQSGAVGNVTTLASDLSVATATSRVGFNIGRI 242 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + ++ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 243 NGRLLELELSALEQKQQ-LDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 301 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ SG TI Sbjct: 302 EAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETI 361 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + + +PLL IP LG+LFR+ E E+ + TP LV Sbjct: 362 ALGGIFSHKNKSAADSVPLLGDIPWLGSLFRHDGKEDERRELVVFITPRLV 412 >gi|262163787|ref|ZP_06031527.1| S-protein secretion component D [Vibrio mimicus VM223] gi|262027767|gb|EEY46432.1| S-protein secretion component D [Vibrio mimicus VM223] Length = 713 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 105/232 (45%), Gaps = 22/232 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV ++ TIAE+ D +Q G IT G+ +G +K A + G S+ GV Sbjct: 470 QVLIQATIAEINIDDAQQFGVDFDITSGTITGGTKGLAG-------FDNGVLSLTGVFGD 522 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTH 310 + A + + L+ P + A++ ++A T G Q T S G + + TT+ Sbjct: 523 VTMG--FRAALKTGKAQVLSSPRIIAMNQEAARITVGDQIQVVTGEVSGGGDDSKATTTY 580 Query: 311 DY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 Y GV L PT+ G + L I EVS N G R T + SG T Sbjct: 581 KYVDTGVTLDIIPTINQNGLVELEISQEVS------NKGTGTDINKRSLQTKLLADSGDT 634 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + GL+K DI + +PLL IP LG LF+ ++ E+ + TP+++ Sbjct: 635 VFMGGLIKQDIGETDNRVPLLGDIPYLGNLFKYKSQTQKSVELVLLITPYVI 686 >gi|308188407|ref|YP_003932538.1| Type IV pilus biogenesis and competence protein pilQ precursor [Pantoea vagans C9-1] gi|308058917|gb|ADO11089.1| Type IV pilus biogenesis and competence protein pilQ precursor [Pantoea vagans C9-1] Length = 423 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 2/167 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ I +A P L Q+AS G + Y+ + ++GATS+ + + + T Sbjct: 254 LSALEQENQIEIIASPRLFTSHQQTASIKQGTEIPYEVSAGNSGATSIEFKEAVLGMEVT 313 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 PT+ GRI L+I + P + G D+ S ++ +T V + G T+ L G+ + Sbjct: 314 PTISGNGRIQLKIHISQNMPGRSIRTGDSDILSIDKQEIETQVTVSDGQTLALGGIFQQQ 373 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + +PLL +P++G LFR R++ E+ I TP LV+ A+ Sbjct: 374 RSHGENKVPLLGNVPLIGGLFRQQSEQRKKRELVIFITPRLVREAAL 420 >gi|296105083|ref|YP_003615229.1| outer membrane porin HofQ [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059542|gb|ADF64280.1| outer membrane porin HofQ [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 213 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 236 GKFVSEGGDFSVKGVLDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSA 285 G+ + G D SV F + L ALE+ + +A P L A Q A Sbjct: 15 GQMTTLGSDLSVASATSHVGFNIGRINGRLLDLELSALEQKQQVDIIASPRLLASHMQPA 74 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGV 343 S G + Y+ S +GATSV + + + TP VL GR+ L++ + P V+ Sbjct: 75 SIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPVVLPGGRVRLKLHISENMPGQVLQQ 134 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 G+ + ++ +T VE+ SG T+ L G+ + + +P L KIP LG LFR+ Sbjct: 135 ADGETLAIDKQEIETQVEVKSGETLALGGIFSQKNKTGSDSVPGLGKIPWLGQLFRHDGK 194 Query: 404 NREETEIFIAATPFLV 419 + E E+ + TP LV Sbjct: 195 DNERRELVVFITPRLV 210 >gi|119477881|ref|ZP_01618004.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2143] gi|119449042|gb|EAW30283.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2143] Length = 689 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 21/231 (9%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 F+ + GSS A GG + G + + D SF V++AL++ + L+ Sbjct: 409 AFETNNNGSSVDARGGIAEAIGG---AAGQVLGIGRLDDDLSFNVVVNALQQNSEANILS 465 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS-SSTGATS---------VTTHDYGVVLHFTPTVL 323 P+L + + ASF G + T S ++TG++S V + G+ L TP + Sbjct: 466 TPSLLTLDNEEASFVVGQSIPFVTGSYTATGSSSSNPDNPFQTVERENVGITLRVTPQIN 525 Query: 324 SPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + L I EVS VIG + P RK +TT+ +G TIVL GL++D+I + Sbjct: 526 EGDSLILAISQEVSN-VIGTSTILNSNPITSERKIETTILADNGQTIVLGGLIEDNITES 584 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 + +P+L IP LG LFR++ + + + I FL +P +RD + D+ Sbjct: 585 IQKVPILGDIPFLGRLFRSTSTSVGKKNLLI----FL-RPTIVRDKRQMDN 630 >gi|53804514|ref|YP_113593.1| general secretion pathway protein D [Methylococcus capsulatus str. Bath] gi|53758275|gb|AAU92566.1| general secretion pathway protein D [Methylococcus capsulatus str. Bath] Length = 751 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 13/239 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS-----GPSKSFAADFGGKFVSEGGDFSVKG 249 QV + TI E+ Q G + I+ SS P + DF S G FS Sbjct: 477 QVLIDATIVEISLKNDLQYGLKWLISSGSSTEALGSPLAALVKDFINGAASASGGFSYAL 536 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSV 307 + + + + +L+ L + + ++ P+L ++ Q A G Q L T +S+T T+ Sbjct: 537 IANGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVLTGTTASATIGTTQ 596 Query: 308 TTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMP-SYRVRKADTTVE 361 GV L P V S G + L I +S P + V +G + R+ + V Sbjct: 597 FNQFQQQQSGVTLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKTFQFANREIQSVVA 656 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P+G T+ L GL+ D + + G+P L++IP++G +F ++ E TE+ + TP +V+ Sbjct: 657 VPNGQTLALGGLISDKRSETQTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVVE 715 >gi|332750832|gb|EGJ81239.1| transport protein hofQ [Shigella flexneri 2747-71] gi|332763627|gb|EGJ93866.1| protein involved in utilization of DNA as a carbon source [Shigella flexneri 2930-71] gi|332997370|gb|EGK16986.1| transport protein hofQ [Shigella flexneri K-218] gi|333012492|gb|EGK31873.1| transport protein hofQ [Shigella flexneri K-304] Length = 386 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 106/237 (44%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQESEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|304397810|ref|ZP_07379686.1| type IV pilus secretin PilQ [Pantoea sp. aB] gi|304354521|gb|EFM18892.1| type IV pilus secretin PilQ [Pantoea sp. aB] Length = 423 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 2/167 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ I +A P L Q+AS G + Y+ + ++GATS+ + + + T Sbjct: 254 LSALEQENQIEIIASPRLFTSHQQTASIKQGTEIPYEVSAGNSGATSIEFKEAVLGMEVT 313 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 PT+ GRI L+I+ + P + GD + S ++ +T V + G T+ L G+ + Sbjct: 314 PTLSGNGRIQLKIRISQNMPGRSIRTGDSNILSIDKQEIETQVTVSDGQTLALGGIFQQQ 373 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + + +PLL +P++G LFR R++ E+ I TP LV+ A+ Sbjct: 374 RSRGENKVPLLGNVPLIGGLFRQQSEQRKKRELVIFITPRLVREAAL 420 >gi|30065325|ref|NP_839496.1| outer membrane porin HofQ [Shigella flexneri 2a str. 2457T] gi|56480325|ref|NP_709164.2| outer membrane porin HofQ [Shigella flexneri 2a str. 301] gi|30043587|gb|AAP19307.1| putative transport portein [Shigella flexneri 2a str. 2457T] gi|56383876|gb|AAN44871.2| putative transport portein [Shigella flexneri 2a str. 301] gi|281602739|gb|ADA75723.1| putative transport protein [Shigella flexneri 2002017] gi|313647313|gb|EFS11765.1| transport protein hofQ [Shigella flexneri 2a str. 2457T] gi|332749511|gb|EGJ79928.1| transport protein hofQ [Shigella flexneri K-671] Length = 412 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 106/237 (44%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + ++ + A G+ + G D SV Sbjct: 180 QVELSAHIVTINEKSLRELGVKWTLADAQH-------AGGVGQVTTLGSDLSVATATTHV 232 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS + Y+ S +GA Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQESEIPYQVSSGESGA 292 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ Sbjct: 293 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 352 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 353 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|17547833|ref|NP_521235.1| general secretion pathway protein D [Ralstonia solanacearum GMI1000] gi|17430138|emb|CAD16823.1| probable general secretory pathway d transmembrane protein [Ralstonia solanacearum GMI1000] Length = 805 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 22/218 (10%) Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291 GG+F GV ++ + +L AL ++ L+ P L + GQ+ T+G Sbjct: 515 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 571 Query: 292 QHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347 Y SS T T D G+ L P + G + ++I E S V G NA Sbjct: 572 ---YAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGMVKMQIFQESSAVVNGTQNATQ 628 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ VR +T V G IVL GLL+D+ Q ++ +P L IP+LGALFR+ R++ Sbjct: 629 GPTTNVRSIETNVIANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPVLGALFRSESKTRKK 688 Query: 408 TEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFF 444 T + + P++++ A LS D+ Y+ DA+ F Sbjct: 689 TNLLVFLRPYILRTAEATGALS--DNRYNYMRDAQQGF 724 >gi|90424504|ref|YP_532874.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB18] gi|90106518|gb|ABD88555.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB18] Length = 774 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 75/270 (27%), Positives = 125/270 (46%), Gaps = 33/270 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSK--SFAADFGGKFVSEGGDFSVKGVL 251 QV + TIAEV Q G Q +T G P+ S +S D + + Sbjct: 489 QVAIDATIAEVTLTDDLQFGVQTYLTSRDFGMPADRGSLGTASSSALISAASDVVLNRAI 548 Query: 252 DRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F+F + +L+AL T ++ L+ P+L I Q A+ G + +T S++ Sbjct: 549 PGFNFLVGSGSSPKAILNALHAITEVKVLSNPSLVVIDNQVATLQVGDEIPIQTGSATVL 608 Query: 304 ATSVT---THDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348 ++S T T DY G++L P + + G + L I+ E+S PV + Sbjct: 609 SSSNTIANTTDYRRTGILLQVVPRINANGNVRLEIEQEISNPVASSSTSSSSSTSTNSLT 668 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ RK ++V + SG T++LAGL+ D + + GIP L ++P +G +F + + T Sbjct: 669 PTVSTRKVKSSVAVASGQTVLLAGLISDTQNKTRSGIPGLDQLPGVGDVFSQTEKIMKRT 728 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 E+ I ++P +RD S D H+ E+ Sbjct: 729 ELII-----FIRPQIIRDGS--DAHFVAEE 751 >gi|148262762|ref|YP_001229468.1| general secretion pathway protein D [Geobacter uraniireducens Rf4] gi|146396262|gb|ABQ24895.1| general secretion pathway protein D [Geobacter uraniireducens Rf4] Length = 641 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 23/246 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEGGDFSVKG 249 QV ++ IAEV LK +G Q + G +S + + A D ++ + G Sbjct: 356 QVFVEAVIAEVSLSKLKDLGVQWGVLGGASNGTATAAGLYDPQDTFTTLLTALANLKSAG 415 Query: 250 VL------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---TVSS 300 + +F VL AL+ A+ L+ PT+ + A G +K T+S+ Sbjct: 416 ITIPDLTGTALNFSAVLRALDSLGAVNVLSTPTIMTSDNKEAEIFVGENVPFKGNVTISN 475 Query: 301 STGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVR 354 +T + S+ D G+ L TP + + L I E+S V G A D+ + + R Sbjct: 476 TTTPSFQSIERKDTGITLKITPQISEGEYVKLDIYQEISAISNTTVSG--ASDLITTK-R 532 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 A T+V + T+V+ GL++D Q+ IPLL IP LG LF+ R++T + I Sbjct: 533 SAKTSVAVKDKDTMVIGGLIQDREQETVNKIPLLGDIPFLGWLFKFKNTTRQKTNLLIVL 592 Query: 415 TPFLVK 420 TP +V+ Sbjct: 593 TPRIVR 598 >gi|220921783|ref|YP_002497084.1| general secretion pathway protein D [Methylobacterium nodulans ORS 2060] gi|219946389|gb|ACL56781.1| general secretion pathway protein D [Methylobacterium nodulans ORS 2060] Length = 784 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 124/255 (48%), Gaps = 19/255 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV + VTIAEVR + + G Q+ + S G K+ FG + G +V F Sbjct: 512 QVAVNVTIAEVRLNDQLKYGVQYFLDSSRIGLGKN-KGSFGLVSAAATGATNVLKPGAGF 570 Query: 255 SF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGG-------QHLYKTVS 299 +F + V+ AL+ T ++ L+ P+L + Q A+ G Q + Sbjct: 571 NFLVGGYSGPDVVISALDGFTDVKVLSSPSLVVLENQPATLQVGDSVPITTRQAQSIDYA 630 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 ++ V D G++L+ P + + ++I+ E+S V+G + P+ R+ +T Sbjct: 631 NAPLINQVEFRDTGIILNVIPRIGQNDAVTMQIEQEISA-VVGGSDTLTPTISKRRVAST 689 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +G T++LAGL+ D Q+ ++GIP L+++P +G LF ++ E TE+ + P +V Sbjct: 690 ISVANGQTVLLAGLISDKHQRERDGIPFLNRLPQIGQLFSSTDNGAERTELVVFIRPVVV 749 Query: 420 KPVAMRDLSRPDDHY 434 + RD R + Y Sbjct: 750 R--NGRDAQRVAEDY 762 >gi|85860072|ref|YP_462274.1| general secretion pathway protein D [Syntrophus aciditrophicus SB] gi|85723163|gb|ABC78106.1| general secretion pathway protein D [Syntrophus aciditrophicus SB] Length = 601 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 5/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGV 314 ++ A++ T I L++P L + + A G Y T +T +S D GV Sbjct: 404 MIQAIKSDTDIHILSKPQLLTMDNEEAQIHVGKNVPYATRKETTTTNLDYSSYEYRDVGV 463 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L TP + S G + ++I EVS+ V + +P+ R +TTV + T+V+ G++ Sbjct: 464 SLKITPHINSEGFVRMKINQEVSQ-VTEDSPTGLPTTNKRAVNTTVTIKDSETVVIGGMI 522 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 D Q +PLL IP+LG LF++ NRE+T +++ TP +++ Sbjct: 523 GDSTQLGTYKVPLLGDIPVLGWLFKSRSSNREKTNLYVFITPRVIR 568 >gi|253996449|ref|YP_003048513.1| type II and III secretion system protein [Methylotenera mobilis JLW8] gi|253983128|gb|ACT47986.1| type II and III secretion system protein [Methylotenera mobilis JLW8] Length = 659 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 124/244 (50%), Gaps = 14/244 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKF-VSEGGDF-S 246 E +V L+V + E+ R L+ IG ++ S+ S + + G+ ++E +F S Sbjct: 336 EPEVMLEVEVMEINRRSLENIGVRYPSQVSVGVQGKTSSNGVSTNTPGRLSLAELKNFNS 395 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGAT 305 GV L+ L + T LA P + + + A G + ++ +V++STG Sbjct: 396 GLGVFTISDPVLALNLLHQDTDTNLLANPQIRVKNREKAKIHVGDKIPVFTSVANSTGFV 455 Query: 306 SVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTT 359 S T + + G+ L PT+L ++ +++ EVS + + G + +Y + R A+TT Sbjct: 456 SQTVNYLEVGIKLDVEPTILLQDQVNIKVGLEVSNITDQVKTDTGVL-AYTIGSRNANTT 514 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++L +G T +LAGL +DD Q + +P LS +P +G LF + ++ + EI + TP ++ Sbjct: 515 LQLKNGETQILAGLFRDDGQNISNKVPGLSSLPFIGRLFTDKNNDKRKNEIVLLITPRIL 574 Query: 420 KPVA 423 +A Sbjct: 575 HNIA 578 >gi|149926612|ref|ZP_01914872.1| pili assembly protein PilQ [Limnobacter sp. MED105] gi|149824541|gb|EDM83757.1| pili assembly protein PilQ [Limnobacter sp. MED105] Length = 681 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE +RT++ P + + + A G + Y+ +++S+GAT+ + + L T Sbjct: 522 LRALELENKVRTVSNPRVITSNKEPALIEQGTEIPYQ-IATSSGATATEFKEANLKLAVT 580 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ IG+ + P+ R+ T V + GGT+VL G+ ++D Sbjct: 581 PQIAPDGTVLLDV--DVAKDSIGIETSNGPAIDTRRVKTKVLVSDGGTVVLGGIFEEDDN 638 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L + P L IP LG LFR +R E+ I TP ++ Sbjct: 639 VLNDKTPFLGDIPGLGVLFRGKNESRRRAELLIFLTPVVL 678 >gi|220931453|ref|YP_002508361.1| type II and III secretion system protein [Halothermothrix orenii H 168] gi|219992763|gb|ACL69366.1| type II and III secretion system protein [Halothermothrix orenii H 168] Length = 881 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 10/177 (5%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---------TVSSSTGA 304 ++ L LE LA P L ++G++A G + K + A Sbjct: 408 ITWPEYLRFLEEEGQANMLANPRLLTLNGENARLLIGDKVPVKIEETSGSSEESEGESNA 467 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELP 363 S D G+ L FTP + G I + + EVS + G+ +P + R+A T + L Sbjct: 468 VSYEYIDVGISLEFTPWITEDGYIIMDVAPEVSSLGSPMGGGESIPPIKTREARTKIRLK 527 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T + GL+++D + +PLL IP+LG LFR S+ ++ +TE+ I TP +VK Sbjct: 528 DGQTFAIGGLIREDELESIAKVPLLGDIPLLGTLFRRSQTDKVKTEVVIFITPHIVK 584 >gi|239995641|ref|ZP_04716165.1| general secretion pathway protein D [Alteromonas macleodii ATCC 27126] Length = 683 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 10/185 (5%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + GV++ + V+ A+ T LA P LT + + A F G Q + ++ Sbjct: 434 GANGLIAGVIEN-GWGAVVQAVSTDTNSNILATPHLTTMDNEEAFFIVG-QEVPIITGTT 491 Query: 302 TGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 TGA +V + G+ L TP + + L I+ EVS V G + D+ S R+ Sbjct: 492 TGANNSNPFQTVDRQEVGIKLKVTPQINEGDAVQLLIEQEVSS-VSGATSVDI-SINKRE 549 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 TTV + GGTIVL GL+ +D+Q+ + +PLL IPILG LF+++ ++ + + + Sbjct: 550 IKTTVIVDDGGTIVLGGLIDEDVQESESKVPLLGDIPILGHLFKSTSTSKRKRNLMVFLK 609 Query: 416 PFLVK 420 P +V+ Sbjct: 610 PTIVR 614 >gi|299065327|emb|CBJ36496.1| General Secretory Pathway protein D, type II secretion system [Ralstonia solanacearum CMR15] Length = 805 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 102/218 (46%), Gaps = 22/218 (10%) Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291 GG+F GV ++ + +L AL ++ L+ P L + GQ+ T+G Sbjct: 515 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 571 Query: 292 QHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347 Y SS T T D G+ L P + G + ++I E S V G NA Sbjct: 572 ---YAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGTVKMQIFQESSAVVNGTQNATQ 628 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ VR +T V G IVL GLL+D+ Q ++ +P L IP+LGALFR+ R++ Sbjct: 629 GPTTNVRSIETNVIANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPVLGALFRSESKTRKK 688 Query: 408 TEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFF 444 T + + P++++ A LS D+ Y DA+ F Sbjct: 689 TNLLVFLRPYILRTAEATGALS--DNRYGYMRDAQQGF 724 >gi|119943890|ref|YP_941570.1| general secretion pathway protein D [Psychromonas ingrahamii 37] gi|119862494|gb|ABM01971.1| general secretion pathway protein D [Psychromonas ingrahamii 37] Length = 662 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 18/173 (10%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD--- 311 ++ VL AL AT LA P+LT + Q ASF G + V TG+TS T+D Sbjct: 424 NWGVVLQALSSATTSNILATPSLTTLDNQEASFIVGDE-----VPVLTGSTSSATNDNPF 478 Query: 312 -------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 G+ L TP + + + I+ EVS+ +A D+ + R TTV S Sbjct: 479 QTIERKEIGIKLKVTPQINEGDSVQMIIEQEVSDIKNDTSAVDVI-FSTRSVKTTVLAKS 537 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE--IFIAAT 415 G TIV+ GL+ + +++ + +PLL IP+LG LFR+++ + E+ IF+ AT Sbjct: 538 GETIVIGGLIDETVKETVQKVPLLGDIPLLGFLFRSTQSSTEKRNLMIFLRAT 590 >gi|294638088|ref|ZP_06716347.1| protein transport protein HofQ [Edwardsiella tarda ATCC 23685] gi|291088796|gb|EFE21357.1| protein transport protein HofQ [Edwardsiella tarda ATCC 23685] Length = 400 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 2/167 (1%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + L ALER + +A P L A GQ AS G + Y + G +++ + + Sbjct: 231 ALAMTLAALERQDKVAIIASPQLMAAHGQMASIKQGSELPYAVSNGERGVSTMEFKEAVL 290 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAG 372 + TP VL+ RI L +Q + P V GD + + K + T V LP+G T VL G Sbjct: 291 GMSVTPRVLADERIELALQITQNMPGRLVRQGDSEALAIDKQEISTQVTLPNGDTAVLGG 350 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + Q EG P L+ IP+LG L R E E+ I TP L+ Sbjct: 351 IFQYQRQDGYEGFPWLASIPLLGHLLRRDSQRSERRELVIFITPTLL 397 >gi|91775689|ref|YP_545445.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91709676|gb|ABE49604.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 653 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 26/247 (10%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFV 239 E +V L+V + E+ R L+ IG ++ ++ G+++ + F Sbjct: 336 AEPEVMLEVEVLEINRRSLENIGIRYPTNVSLDVQGRDTVNGTTTLTPGKLTINELKNFN 395 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTV 298 S G FS+ + L+ L++ T LA P + + + A G + + +V Sbjct: 396 SNLGVFSISDPV------LALNLLQQDTDTNLLANPHIRVKNREKAKIHVGDRIPVLTSV 449 Query: 299 SSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV- 353 ++STG S T + + GV L PT+L + ++I EVS + ++G + +Y + Sbjct: 450 ANSTGFISQTVNYIEVGVKLDVEPTILLRDEVSIKIGLEVSNQTDRMETSSGTV-TYTIG 508 Query: 354 -RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A T + L G T +LAGL+++D Q++ G+P LSK+P++G LF N+ + + EI + Sbjct: 509 TRNASTILRLKDGETQILAGLMRNDEQKITNGVPGLSKLPLIGKLFNNNNNDLSKKEIAL 568 Query: 413 AATPFLV 419 TP ++ Sbjct: 569 FITPRII 575 >gi|86151899|ref|ZP_01070112.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 260.94] gi|148925643|ref|ZP_01809331.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni CG8486] gi|315124908|ref|YP_004066912.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841007|gb|EAQ58256.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 260.94] gi|145845653|gb|EDK22744.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni CG8486] gi|315018630|gb|ADT66723.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 470 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+ +F+++++ L + L+ P L A++ Q A + G Y+ SS G + T Sbjct: 267 GLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326 Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352 T ++Y G++L+ P + G+I LRI +S+ P + P Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +K + V++ + T++L GL+ D K I LSKIPILG+LF+ N + TEI Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVF 446 Query: 413 AATPFLVKPV---AMRDL 427 TP +V V +++DL Sbjct: 447 IITPSIVDSVNAPSLKDL 464 >gi|312143767|ref|YP_003995213.1| type II and III secretion system protein [Halanaerobium sp. 'sapolanicus'] gi|311904418|gb|ADQ14859.1| type II and III secretion system protein [Halanaerobium sp. 'sapolanicus'] Length = 629 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 4/167 (2%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY- 312 ++ AL+ + +TLA P L ++G++A+ + Y+ V + + T +Y Sbjct: 364 LTWPEFFRALDETSDSKTLANPRLMTLNGETANMAILDEVPYRVVEINDDGSRTETFEYA 423 Query: 313 --GVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 GV + FTP + I L I+ VS + AG P+ R R+ +T + L G T+ Sbjct: 424 EAGVDIEFTPWITENKEIELSIKPRVSSFTQVTTAAGAPPALRSREVETMLRLNDGETLA 483 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + GL++ D + IPLL IPI+G LF++ R E+ I TP Sbjct: 484 IGGLIQTDQDGVITKIPLLGDIPIIGELFKSRRNEGSHNELIIFVTP 530 >gi|254558682|ref|YP_003065777.1| General secretion pathway protein D [Methylobacterium extorquens DM4] gi|254265960|emb|CAX21710.1| putative General secretion pathway protein D [Methylobacterium extorquens DM4] Length = 794 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 131/283 (46%), Gaps = 32/283 (11%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 E + + + + RNQY K++ +L A QV L+ IAEV + Q G Q + Sbjct: 473 EANNSLVISATRNQY-----DKILRILGRLDAMPTQVLLETVIAEVTLNNELQFGVQWFL 527 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD-------FSVKGV------LDRFSFETVLHALERA 266 +SG + A + V++G +V+GV L+ F VL+AL+ Sbjct: 528 --KNSGSRFNLAQADTNRSVAQGTSGTDALIKAAVRGVPGFNYLLNASDFNVVLNALQGV 585 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATS------VTTHDYGVVLHFT 319 T + ++ P +T + ++A G Q + + S A + D GV+L T Sbjct: 586 TRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVILSVT 645 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P V G + L I EVS+ V+ ++ P+ R R+ T+V + G ++ + G++++ Sbjct: 646 PRVNKNGLVVLDINQEVSD-VVKTTTSEINSPTIRQRRVATSVAVNDGHSLAIGGMVQEK 704 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 Q E +P+L +PI+G FRN R TE+ + P +++ Sbjct: 705 AQITNESVPVLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIR 747 >gi|205356095|ref|ZP_03222862.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205345938|gb|EDZ32574.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 470 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+ +F+++++ L + L+ P L A++ Q A + G Y+ SS G + T Sbjct: 267 GLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326 Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352 T ++Y G++L+ P + G+I LRI +S+ P + P Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +K + V++ + T++L GL+ D K I LSKIPILG+LF+ N + TEI Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVF 446 Query: 413 AATPFLVKPV---AMRDL 427 TP +V V +++DL Sbjct: 447 IITPSIVDSVNAPSLKDL 464 >gi|86153104|ref|ZP_01071309.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613593|ref|YP_001001123.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81-176] gi|167006016|ref|ZP_02271774.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81-176] gi|85843989|gb|EAQ61199.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249586|gb|EAQ72545.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81-176] gi|315058928|gb|ADT73257.1| Type II secretion outermembrane pore forming protein (PulD) [Campylobacter jejuni subsp. jejuni S3] Length = 470 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+ +F+++++ L + L+ P L A++ Q A + G Y+ SS G + T Sbjct: 267 GLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326 Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352 T ++Y G++L+ P + G+I LRI +S+ P + P Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +K + V++ + T++L GL+ D K I LSKIPILG+LF+ N + TEI Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVF 446 Query: 413 AATPFLVKPV---AMRDL 427 TP +V V +++DL Sbjct: 447 IITPSIVDSVNAPSLKDL 464 >gi|187930465|ref|YP_001900952.1| general secretion pathway protein D [Ralstonia pickettii 12J] gi|187727355|gb|ACD28520.1| general secretion pathway protein D [Ralstonia pickettii 12J] Length = 807 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 18/216 (8%) Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 GG+F GV +R S +L AL ++ L+ P L + + A G Q++ T Sbjct: 515 NGGNF---GVFNRGSGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIG-QNVPITTG 570 Query: 300 S---STGATSVTT------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMP 349 S + GA SVT D G+ L P + G + ++I E S V G NA P Sbjct: 571 SYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQESSAVVPGTQNATQGP 630 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + VR +T V G +VL GLL+D+ Q ++ +P L IPILGALFR+ R +T Sbjct: 631 TTNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLGDIPILGALFRSENKTRVKTN 690 Query: 410 IFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFF 444 + + P +++ A LS D+ Y+ D + F Sbjct: 691 LLVFLRPIILRTADATGTLS--DNRYNYMRDTQQGF 724 >gi|283956850|ref|ZP_06374323.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni 1336] gi|283791576|gb|EFC30372.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni 1336] Length = 470 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+ +F+++++ L + L+ P L A++ Q A + G Y+ SS G + T Sbjct: 267 GLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326 Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352 T ++Y G++L+ P + G+I LRI +S+ P + P Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +K + V++ + T++L GL+ D K I LSKIPILG+LF+ N + TEI Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVF 446 Query: 413 AATPFLVKPV---AMRDL 427 TP +V V +++DL Sbjct: 447 IITPSIVDSVNAPSLKDL 464 >gi|86149355|ref|ZP_01067586.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596641|ref|ZP_01099878.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 84-25] gi|218563075|ref|YP_002344854.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840137|gb|EAQ57395.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191482|gb|EAQ95454.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 84-25] gi|112360781|emb|CAL35581.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926681|gb|ADC29033.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni IA3902] gi|315927422|gb|EFV06760.1| Pilus biogenesis protein MshL [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929011|gb|EFV08254.1| General secretory pathway protein D [Campylobacter jejuni subsp. jejuni 305] Length = 472 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+ +F+++++ L + L+ P L A++ Q A + G Y+ SS G + T Sbjct: 269 GLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 328 Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352 T ++Y G++L+ P + G+I LRI +S+ P + P Sbjct: 329 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 388 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +K + V++ + T++L GL+ D K I LSKIPILG+LF+ N + TEI Sbjct: 389 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVF 448 Query: 413 AATPFLVKPV---AMRDL 427 TP +V V +++DL Sbjct: 449 IITPSIVDSVNAPSLKDL 466 >gi|327395552|dbj|BAK12974.1| protein transport protein HofQ precursor HofQ [Pantoea ananatis AJ13355] Length = 430 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 5/182 (2%) Query: 244 DFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 D SV L R + L ALE+ + +A P L Q+AS G + Y+ + Sbjct: 235 DVSVGVTLSRIGGKLLDLELSALEQENQVEIIASPRLFTSHQQTASIKQGTEIPYEVSAG 294 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DT 358 ++GATS+ + + + TP VL GRI L+I+ + P V GD + K +T Sbjct: 295 NSGATSIEFKEAVLGMEVTPAVLGNGRIQLKIRISQNVPGRAVQTGDSQVLSIDKQEIET 354 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + G T+ L G+ + + +PLL +P++G+LFR + + E+ I TP L Sbjct: 355 QVTVSDGQTLALGGIFHQQRTRGQRQVPLLGNLPVVGSLFRQHAEEQRKRELVIFMTPRL 414 Query: 419 VK 420 V+ Sbjct: 415 VQ 416 >gi|326403170|ref|YP_004283251.1| type II secretory pathway protein D [Acidiphilium multivorum AIU301] gi|325050031|dbj|BAJ80369.1| type II secretory pathway protein D [Acidiphilium multivorum AIU301] Length = 758 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 9/169 (5%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGG--QHLYKTVSSS--TGA---TSVTTHDY 312 + AL+ T ++ L+ P L +G++A+ G +L +T S+ TGA SV + Sbjct: 541 ISALQSVTQVQVLSSPQLLVQNGRTANLLVGNLVPYLSQTSQSTLTTGAPVINSVNYQET 600 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 GV+L TP + S G + L + +VS P + + P++ R ++V + G TI L Sbjct: 601 GVILQITPHISSDGLVALTVSQQVSNVAPSVTTQGLNSPTFSERAVSSSVVVHDGQTIGL 660 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 AGL+ D++Q+ G+P L +P+LG LF +R E+ + TP +V Sbjct: 661 AGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDNSRARQELLVLITPHVV 709 >gi|153952576|ref|YP_001398775.1| general secretory pathway protein D [Campylobacter jejuni subsp. doylei 269.97] gi|152940022|gb|ABS44763.1| general secretory pathway protein D [Campylobacter jejuni subsp. doylei 269.97] Length = 470 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+ +F+++++ L + L+ P L A++ Q A + G Y+ SS G + T Sbjct: 267 GLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326 Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352 T ++Y G++L+ P + G+I LRI +S+ P + P Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +K + V++ + T++L GL+ D K I LSKIPILG+LF+ N + TEI Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVF 446 Query: 413 AATPFLVKPV---AMRDL 427 TP +V V +++DL Sbjct: 447 IITPSIVDSVNAPSLKDL 464 >gi|160896756|ref|YP_001562338.1| general secretion pathway protein D [Delftia acidovorans SPH-1] gi|160362340|gb|ABX33953.1| general secretion pathway protein D [Delftia acidovorans SPH-1] Length = 819 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 128/256 (50%), Gaps = 29/256 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITG-------SSSG----PSKSFAADFGGKFVSEGG 243 Q+ ++ +I EV + Q G Q + +G S SG K AD + +G Sbjct: 538 QILIEASIVEVTLNDGLQYGLQWAFSGDVGNNGYSGSGLISTDGKRTTADIAAA-IGQGF 596 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------T 297 ++++K + + L+AL T ++ +A P+L + +A+ + G Q Y+ T Sbjct: 597 NYTLKNSAG--TIKAALNALSSKTNVKVVASPSLMVLDNHTAAISVGTQQPYRSGEISTT 654 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---- 353 S+ A S D GV L TP+V + G I + V++ V V A D + +V Sbjct: 655 TVGSSNAVSYQYKDTGVNLQVTPSV-NAGNI---VTMTVNQMVTDVGAKDEITQQVTFLQ 710 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+ + V + SG +IV+ GL++++ + GIP+L ++P++G LF ++ + TE+ + Sbjct: 711 RQLSSRVSVRSGESIVMGGLIQENTSDGRSGIPVLHELPVVGNLFGSTNNSMRRTELLVI 770 Query: 414 ATPFLVKP-VAMRDLS 428 TP +V+ V +R++S Sbjct: 771 ITPRVVRTDVDIREVS 786 >gi|317494398|ref|ZP_07952812.1| type IV pilus secretin PilQ [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917648|gb|EFV38993.1| type IV pilus secretin PilQ [Enterobacteriaceae bacterium 9_2_54FAA] Length = 437 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 2/154 (1%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + +A P L A + Q+AS G + Y+ S ++G+TS+ + + + TP V+ G+I Sbjct: 274 VEIIASPHLMATNLQTASIKQGTEIPYEVSSGASGSTSIEFKEAVLGMEVTPRVMRNGKI 333 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 L +Q + P + GD + + K + T V L G T++L G+ + K +P Sbjct: 334 TLTLQITQNMPGRSIKQGDGEALAIDKQEIKTQVTLSDGDTVILGGIFQRQTTHGKTQVP 393 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L IP+LGALFR+S + E+ I TP LVK Sbjct: 394 KLGDIPLLGALFRDSTDASKRRELVIFITPKLVK 427 >gi|148259896|ref|YP_001234023.1| general secretion pathway protein D [Acidiphilium cryptum JF-5] gi|146401577|gb|ABQ30104.1| general secretion pathway protein D [Acidiphilium cryptum JF-5] Length = 756 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 9/169 (5%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGG--QHLYKTVSSS--TGATSVTTHDY--- 312 + AL+ T ++ L+ P L +G++A+ G +L +T S+ TGA + + +Y Sbjct: 539 ISALQSVTQVQVLSSPQLLVQNGRTANLLVGNLVPYLSQTSQSTLTTGAPVINSVNYQET 598 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 GV+L TP + S G + L + +VS P + + P++ R ++V + G TI L Sbjct: 599 GVILQITPHISSDGLVALTVSQQVSNVAPSVTTQGLNSPTFSERAVSSSVVVHDGQTIGL 658 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 AGL+ D++Q+ G+P L +P+LG LF +R E+ + TP +V Sbjct: 659 AGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDNSRARQELLVLITPHVV 707 >gi|308051183|ref|YP_003914749.1| pilus (MSHA type) biogenesis protein MshL [Ferrimonas balearica DSM 9799] gi|307633373|gb|ADN77675.1| pilus (MSHA type) biogenesis protein MshL [Ferrimonas balearica DSM 9799] Length = 551 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 94/346 (27%), Positives = 153/346 (44%), Gaps = 50/346 (14%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + LE TL + I + R + T+ G+V +++ + E+FL Q+ +N Sbjct: 228 SQLEQTLEKMIGSGDGRQVL---TLPQAGLV-SVKAYPHELREVESFLGQAQQNL----- 278 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFV 239 E QV L+ I EV Q G S +TGS SF G+F Sbjct: 279 ------------ERQVVLEARILEVVLSDGYQQGINWSEVTGSIGSTDISFGTS-EGQFS 325 Query: 240 SEGGDF--SVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + D + G+ F V+ L+ + TL+ P +TAI+ Q A G + Sbjct: 326 NAVTDVIGGITGISFTGTDFSAVVTLLDTQGDVDTLSSPRVTAINNQKAVIKVGTDEYFV 385 Query: 297 T-VSSSTGA--TSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGV 343 T +S++T A T +TT D G+ L TP + G + L + T+++E + Sbjct: 386 TDISATTVASDTPITTPDVELTPFFSGIALDVTPQIGQSGEVLLHVHPSVTDITEQTKTI 445 Query: 344 NAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 A D + ++R++DT + SG +V+ GL+K +Q++ +PLL +IP LG L Sbjct: 446 TALDTTLELPLAQSQIRESDTMIRAHSGDVVVIGGLMKTLQEQVESKVPLLGQIPFLGEL 505 Query: 398 FRNSRFNREETEIFIAATPFLVKP-VAMRDLSRP----DDHYSVED 438 F N +TE+ I P +V+P + L R DD Y ++ Sbjct: 506 FTNRSQRNVKTELVILLRPTIVEPGTWQKQLQRSQQTLDDWYPSQN 551 >gi|170740267|ref|YP_001768922.1| general secretion pathway protein D [Methylobacterium sp. 4-46] gi|168194541|gb|ACA16488.1| general secretion pathway protein D [Methylobacterium sp. 4-46] Length = 779 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 128/257 (49%), Gaps = 23/257 (8%) Query: 195 QVTLKVTIAEVR-RDILKQIGFQHSITGSSSGPSK--------SFAADFGGKFVSEGGDF 245 QV + VTIAEV+ D LK G Q + S G + S AA + G F Sbjct: 507 QVAVNVTIAEVKLNDELKH-GVQFFLDSRSLGLGRNKGSVGLVSAAASGASNVLKPGNGF 565 Query: 246 SVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGG-------QHLYKT 297 + ++ +S + V++AL+ T ++ L+ P+L + Q A+ G Q Sbjct: 566 NF--LVGGYSGPDVVINALDGFTDVKVLSSPSLVVLENQPATLQVGDSVPITTRQAQSVD 623 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 +++ V D G++L+ P + + ++I+ E+S V+G + P+ R+ Sbjct: 624 FANAPLINQVEFRDTGIILNVIPRIGQNDAVTMQIEQEISA-VVGGSDTLTPTISKRRVA 682 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 +T+ + +G T++LAGL+ D Q+ ++GIP+L ++P +GALF ++ E TE+ + P Sbjct: 683 STISVANGQTVLLAGLISDKHQRERDGIPILGRLPQIGALFSSTNNADERTELVVFIRPV 742 Query: 418 LVKPVAMRDLSRPDDHY 434 +V+ + RD R + Y Sbjct: 743 VVR--SGRDAQRVAEDY 757 >gi|332995712|gb|AEF05767.1| general secretion pathway protein D [Alteromonas sp. SN2] Length = 680 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 10/180 (5%) Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT- 305 + G++D + V+ A+ T LA P LT + + A F G Q + +STG+ Sbjct: 438 IAGIIDN-GWGAVVQAVSTDTNSNVLATPHLTTMDNEEAYFIVG-QEVPIITGTSTGSNN 495 Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 +V + G+ L TP + + L I+ EVS V G + D+ S R+ TTV Sbjct: 496 SNPFQTVDRQEVGIKLKVTPQINEGDAVQLLIEQEVSS-VSGATSVDI-SINKREIKTTV 553 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + GGTIVL GL+ +D+Q+ +PLL IPI+G LF+++ ++ + + + P +V+ Sbjct: 554 IVDDGGTIVLGGLIDEDVQESVSKVPLLGDIPIIGNLFKSTSTSKRKRNLMVFLKPTIVR 613 >gi|109896562|ref|YP_659817.1| general secretion pathway protein D [Pseudoalteromonas atlantica T6c] gi|109698843|gb|ABG38763.1| general secretion pathway protein D [Pseudoalteromonas atlantica T6c] Length = 689 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 17/228 (7%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G +S ++ G + A+ GG F V V D + VL A+ T L+ Sbjct: 415 GDPYSFDETTEGDYTALASLLGGV-----NGFLVGAVKDGWG--AVLQAVSTDTNSNVLS 467 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGR 327 P LT + + A F G Q + S+TG+ SV + G+ L TP + Sbjct: 468 TPHLTTLDNEEAFFIVG-QEVPIITGSTTGSNNTNPFQSVERQEIGIKLKVTPQINEGNA 526 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L I+ EVS + G + D+ + R+ TTV + GGTIVL GL+ DD+Q+ +P+ Sbjct: 527 VQLLIEQEVSS-ISGATSVDILINK-REIKTTVIVDDGGTIVLGGLIDDDVQESVSKVPI 584 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHY 434 L IP LG LF+++ ++ + + + P +++ V D+SR +Y Sbjct: 585 LGDIPYLGNLFKSTTTSKSKRNLMVFIRPTIIRDGVTASDISRKKYNY 632 >gi|300690062|ref|YP_003751057.1| general Secretory Pathway protein D, type II secretion system [Ralstonia solanacearum PSI07] gi|299077122|emb|CBJ49746.1| General Secretory Pathway protein D, type II secretion system [Ralstonia solanacearum PSI07] Length = 805 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 16/215 (7%) Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291 GG+F GV ++ + +L AL ++ L+ P L + GQ+ T+G Sbjct: 515 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 571 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPS 350 + +S T + D G+ L P + G + ++I E S V G NA P+ Sbjct: 572 YAQTGSAASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQESSAVVNGTQNATQGPT 631 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 VR +T V G IVL GLL+D+ Q ++ +P L IP+LGALFR+ R++T + Sbjct: 632 TNVRSIETNVLANDGQVIVLGGLLEDNYQDAEQKVPGLGDIPVLGALFRSESKQRKKTNL 691 Query: 411 FIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFF 444 + P++++ A LS D+ Y+ D + F Sbjct: 692 LVFLRPYILRTAEATGALS--DNRYNYMRDTQQGF 724 >gi|57238497|ref|YP_179628.1| general secretory pathway protein D [Campylobacter jejuni RM1221] gi|57167301|gb|AAW36080.1| general secretory pathway protein D [Campylobacter jejuni RM1221] Length = 470 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+ +F+++++ L + L+ P L A++ Q A + G Y+ SS G + T Sbjct: 267 GLRVNLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326 Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352 T ++Y G++L+ P + G+I LRI +S+ P + P Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +K + V++ + T++L GL+ D K I LSKIPILG+LF+ N + TEI Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVF 446 Query: 413 AATPFLVKPV---AMRDL 427 TP +V V +++DL Sbjct: 447 IITPSIVDSVNAPSLKDL 464 >gi|302342781|ref|YP_003807310.1| general secretion pathway protein D [Desulfarculus baarsii DSM 2075] gi|301639394|gb|ADK84716.1| general secretion pathway protein D [Desulfarculus baarsii DSM 2075] Length = 746 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 14/173 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGAT----SVT 308 L AL + ++ ++ P L A QSA G + + +S+STG S+ Sbjct: 537 LKALAQKDKLQVISSPLLLAAENQSARILVGREIPIITDLTTSEDISTSTGNKVVDRSIE 596 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGG 366 D G++L TP + G + L I+ EVS+ V+ + GD P++ R A T V G Sbjct: 597 YRDVGIILTVTPRINDSGVVRLNIRQEVSD-VLTDSFGDTGSPAFSQRTATTNVVTTDGQ 655 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +IVLAGL+++ ++ G+P LS +PILG LF+ + TE+ + TP ++ Sbjct: 656 SIVLAGLIQETKHKIDSGVPFLSDVPILGYLFKTEKDVDSRTELILTITPHVI 708 >gi|118592650|ref|ZP_01550040.1| general secretion proteinD [Stappia aggregata IAM 12614] gi|118434701|gb|EAV41352.1| general secretion proteinD [Stappia aggregata IAM 12614] Length = 789 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 24/242 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFGGKFVSEGGDFSVK 248 QV ++ TI EV + + G Q ++G SS P + + G + F V Sbjct: 499 QVVIEATIVEVALNDRLKYGVQAFLSGEGVEIRSSRLPDPADTGEPGAVAL-----FDVD 553 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSS----- 301 V D + VL AL+ T ++ ++ P LT + G++A + G Q L + ++S Sbjct: 554 SV-DGTTATFVLEALQTVTELKVISSPYLTVLDGKAARLSVGDQIPFLVQQTNASETGTT 612 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADT 358 T + D GV+L TP++ + L +Q EVS G N + S R +D Sbjct: 613 TTTNQIEVRDVGVILQVTPSIRPDNSVLLNVQQEVSSAKSSGSGENLTPVISQRTINSDV 672 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +E SG +L GL++ +++ +PL+SK+PI+G LF+ + ++ TE+ + TP + Sbjct: 673 VIE--SGKMALLGGLIQSRSEEVTTKVPLMSKMPIVGNLFKQTDAVKDRTELLVMITPRV 730 Query: 419 VK 420 V+ Sbjct: 731 VR 732 >gi|332750364|gb|EGJ80775.1| transport protein hofQ domain protein [Shigella flexneri 4343-70] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 2/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + +A P L A Q AS + Y+ S +GATSV + + + T Sbjct: 6 LSALEQKQQLDIIASPRLLASHLQPASIKQESEIPYQVSSGESGATSVEFKEAVLGMEVT 65 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 PTVL GRI L++ + P V+ G++ + ++ +T VE+ SG T+ L G+ Sbjct: 66 PTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRK 125 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 126 NKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 167 >gi|157415698|ref|YP_001482954.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81116] gi|157386662|gb|ABV52977.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81116] gi|307748339|gb|ADN91609.1| General secretory pathway protein D [Campylobacter jejuni subsp. jejuni M1] gi|315930985|gb|EFV09960.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 327] Length = 470 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 19/198 (9%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+ +F+++++ L + L+ P L A++ Q A + G Y+ SS G + T Sbjct: 267 GLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326 Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352 T ++Y G++L+ P + G+I LRI +S+ P + P Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +K + V++ + T++L GL+ D K I LSKIPILG+LF+ N + TEI Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKVTEIVF 446 Query: 413 AATPFLVKPV---AMRDL 427 TP +V V +++DL Sbjct: 447 IITPSIVDSVNAPSLKDL 464 >gi|157372838|ref|YP_001480827.1| putative outer membrane porin HofQ [Serratia proteamaculans 568] gi|157324602|gb|ABV43699.1| type IV pilus secretin PilQ [Serratia proteamaculans 568] Length = 413 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 7/232 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-FGGKFVSEGGDFSVKGVLDR 253 QV L I + + L+++G + + P+ S+ D F E S L R Sbjct: 182 QVQLATHIVTINSESLRELGVRWGLAPDDR-PASSWQMDGFNVGLPLERSAVSAGFHLAR 240 Query: 254 FS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + L ALE+ + +A P L + Q+AS G + Y+ S S+GATS+ Sbjct: 241 IGGRLLDLELMALEQENRVEIIASPRLLTANLQTASIKQGTEIPYEVNSGSSGATSMEFK 300 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP +L GRI L +Q + P I AG+ + ++ T V + G T+ Sbjct: 301 EAVLGMEVTPKILPNGRITLTLQISQNMPGRSISRAAGETLAIDKQEIKTQVTVKDGETV 360 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 VL G+ + + + +P +S +P+LG+LF+ S + E+ I TP L+K Sbjct: 361 VLGGVFQRHSAEGADKVPGISDVPLLGSLFKQSSKQHKRRELVIFITPTLIK 412 >gi|254479855|ref|ZP_05093103.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2148] gi|214039417|gb|EEB80076.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2148] Length = 677 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 20/236 (8%) Query: 221 GSSSGPSKSFAADFG---GKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 G + PS D G G S G V D + +L+AL+ L+ P+ Sbjct: 398 GDEATPSNDSEFDVGALAGALASTPGLSLGWGSVDDDLTMTVILNALKTQGNANILSTPS 457 Query: 277 LTAISGQSASFTSGGQHL------YKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPG 326 L + Q A F + GQ++ Y SS GA+ ++ + G+ L TP + Sbjct: 458 LLTLDNQEA-FITVGQNVPFITGSYTNSGSSDGASNPFQTIERENVGITLAVTPHINEGD 516 Query: 327 RIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + L I+ EVS +IG + A D+ + RK T V +VL GL++D++Q + Sbjct: 517 SVVLEIEQEVSNVIIGASQISEAADIITSE-RKIQTKVLAQDSKVVVLGGLIEDNVQDGQ 575 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 + +P+L IP LG LFR + +T + I P +++ A D + D + + D Sbjct: 576 QKVPILGDIPFLGRLFRTDSVDVSKTNLLIFIRPTIIRDNAQLDGATADKYRYIRD 631 >gi|291612584|ref|YP_003522741.1| type IV pilus secretin PilQ [Sideroxydans lithotrophicus ES-1] gi|291582696|gb|ADE10354.1| type IV pilus secretin PilQ [Sideroxydans lithotrophicus ES-1] Length = 688 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 3/161 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L+A E + +A P + A+ SG + Y +SS GATSV + L T Sbjct: 525 LNASELDGTTKNIASPRVVTGDKTPATIESGVEVPYLQATSS-GATSVAFKKAVLGLTVT 583 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + +G+++ VS+ +G +PS +K DT V + +GGT+V+ G+ D Sbjct: 584 PQITPDDHVGMKL--SVSQDTVGNIYSGVPSINTKKVDTQVLVDNGGTVVIGGVYTQDAT 641 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 KE IPLL IPILG LF+ + + E+ + TP +VK Sbjct: 642 DSKEQIPLLGDIPILGWLFKTDTIVKAKKELLVFITPKIVK 682 >gi|297180471|gb|ADI16685.1| type II secretory pathway, component puld [uncultured gamma proteobacterium HF0010_05D02] Length = 666 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 12/179 (6%) Query: 233 DFGGKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D G G GV+D + T+L+ LE+ L+ P+L + + A T G Sbjct: 410 DLAGALSQVPGTTFGWGVVDENLTMTTILNTLEKQGNTNILSTPSLLTLDNEEAFITVGQ 469 Query: 292 QHLYKTVS-SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVI 341 Q + T S ++TGA ++ + GV L TP + + + I EVS Sbjct: 470 QVPFVTGSYTNTGAANGVANPFQTIQRENVGVTLQVTPQINEGDSVVMDIVQEVSSISQQ 529 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 ++A D+ + RK +T V G +VL GL+KDDIQ ++G+PLLS IP++G LFRN Sbjct: 530 ALSASDVITNE-RKIETKVLAKDGDIVVLGGLVKDDIQDSQQGVPLLSGIPVVGRLFRN 587 >gi|294056469|ref|YP_003550127.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] gi|293615802|gb|ADE55957.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] Length = 452 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 16/208 (7%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 I+ +IG + ++ G++ P+ + GG+ SF + LE + Sbjct: 176 IVDEIGSKLNVGGAT--PNTGQGGILNSQVWDNGGE----------SFNAFVRYLESSGK 223 Query: 269 IRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + L+ P L G+ S +G + L +T SS TS G+ L PT+++ Sbjct: 224 AKILSAPNLIIQRGKEGSIVTGEEVPILSQTTSSGGVTTSTEFKSVGIKLSVKPTMIAGT 283 Query: 327 RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 R+ L + EVS + + AG + P VR+A T +E+ G I +AGLL+ + + Sbjct: 284 RVRLEVNPEVSTVIDYIEAGGVSNPIIAVRQARTELEVNDGQLISMAGLLQSTERDTERR 343 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFI 412 P+LS+IPILGALF++ R +T++ I Sbjct: 344 TPILSQIPILGALFKSDREQSSQTQLII 371 >gi|225850376|ref|YP_002730610.1| general secretion pathway protein D [Persephonella marina EX-H1] gi|225645330|gb|ACO03516.1| general secretion pathway protein D [Persephonella marina EX-H1] Length = 669 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 117/265 (44%), Gaps = 35/265 (13%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----------------SKSFAADFGG 236 + QV + I EV LK+IG + + GS G S +F A G Sbjct: 369 KKQVLVTALITEVSEQALKEIGVRWQVFGSQGGAAFRGGISKEGFYNIIGSTNFVA---G 425 Query: 237 KFVSEGGDFSVKG-VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHL 294 + G + + G VL + LER T ++ P + + AS S Sbjct: 426 VLSTSGENVEIGGNVLFFPDLLFLFSLLERGTGFNIVSSPKILTMDNIEASINVSQVTPF 485 Query: 295 YKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNA 345 ++V + +DY G++L TP + S I + I EV+E P IG + Sbjct: 486 AQSVKFDINGNPIINYDYKEVGLILKVTPHI-SGDNIVMEIHQEVNEVIGYEKPQIGEIS 544 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P R+ +TT+ + +G TIVL GL+ + EG+P S IPI+G LF+ + Sbjct: 545 YVVPITSKRELNTTITVTNGKTIVLGGLVSKKTIKTMEGVPFFSSIPIIGNLFKYRSEDL 604 Query: 406 EETEIFIAATPFLV-KPVAMRDLSR 429 +T +F+ TPF++ KP DL+R Sbjct: 605 NKTNLFVFLTPFIIEKP---EDLAR 626 >gi|307579783|gb|ADN63752.1| general secretion pathway protein D [Xylella fastidiosa subsp. fastidiosa GB514] Length = 721 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 38/245 (15%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S ++S GK S G ++ G + +++AL++ T +R L P++ Sbjct: 480 GLPSAAARSGWKSIAGKVTSNGLAWTFLGK----NAAAIINALDQVTQVRLLQTPSVFVR 535 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQT 334 + A+ G + + S +TG S +T+ D GV+L P V G + L I Sbjct: 536 NNAEATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQ 595 Query: 335 EVSEPVIGVNAGDMPS------------------YRVRKADTTVELPSGGTIVLAGLLKD 376 EVS P G +P+ R+ T + SG TI+LAGL+ Sbjct: 596 EVSTP------GSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDS 649 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYS 435 + + G+P LSK+PI+G LF N EI + TP +V+ P R+L+ D YS Sbjct: 650 NSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLT---DEYS 706 Query: 436 VEDDA 440 + +A Sbjct: 707 QKFNA 711 >gi|285019414|ref|YP_003377125.1| general secretion pathway protein d [Xanthomonas albilineans GPE PC73] gi|283474632|emb|CBA17131.1| probable general secretion pathway protein d [Xanthomonas albilineans] Length = 772 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 86/316 (27%), Positives = 139/316 (43%), Gaps = 52/316 (16%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----F 215 AVE + T L +S + S + V+ L++ QV ++ +AEV Q G F Sbjct: 452 AVEETNTLLVRSTPQAW--RSIRDVVEKLDVM-PMQVHIEAQVAEVSLTGDLQYGVNWFF 508 Query: 216 QHSITGSSSG--------------PS---KSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 ++S+ S+ G PS + D GK S+G ++ G + Sbjct: 509 ENSVNASTDGSAANGTGIGRGAGLPSAAGRKIWGDIAGKIGSDGVGWTFLG----RNAAA 564 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDY 312 V+ AL++ T ++ L P++ + A+ G + + S +TG +SV D Sbjct: 565 VITALDKVTNLKLLQTPSVFVRNNAEATLNVGTRIPINSTSINTGIGIDSSYSSVQYIDT 624 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP-------------VIGVNAGDMPSYRVRKADTT 359 GV+L P V G + L I EVS P V+ +A ++ R+ T Sbjct: 625 GVILKVRPRVTKDGMVFLDIVQEVSTPSARPAACTAGTTNVVNTSACNV-DINTRRVKTE 683 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + SG TI+LAGL+ D G+P LSK+P++GALF + E+ + TP +V Sbjct: 684 AAVQSGDTIMLAGLINDSTVDSSLGVPFLSKMPVIGALFGQKGQQKNRNEVIVLLTPTIV 743 Query: 420 K-PVAMRDLSRPDDHY 434 + P R+L+ D Y Sbjct: 744 RDPQEARNLT---DEY 756 >gi|119505085|ref|ZP_01627161.1| Helix-turn-helix, AraC type [marine gamma proteobacterium HTCC2080] gi|119459067|gb|EAW40166.1| Helix-turn-helix, AraC type [marine gamma proteobacterium HTCC2080] Length = 696 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 89/198 (44%), Gaps = 10/198 (5%) Query: 233 DFGGKFVSEGGDFSVKGVL-DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D G G GV+ D S +L+ALE L+ P+L + Q A T G Sbjct: 432 DLAGALSQVPGTTLGWGVVGDDLSMSVILNALETQGNANILSTPSLLTLDNQEAYITVGQ 491 Query: 292 QHLYKTVS-SSTGATS--------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 + T S S+TG S + + G+ L TP V + L I EVS Sbjct: 492 NVPFVTGSYSNTGGASNVQNPFQTIERENVGITLKVTPQVNEGDSVVLDIVQEVSSISQQ 551 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + A RK +T V G +VL GL+KDD+Q ++G+P L IP+LG LFRN Sbjct: 552 LLAAADVITNERKIETKVMAQDGDVVVLGGLVKDDVQDSQQGVPFLQDIPLLGRLFRNDV 611 Query: 403 FNREETEIFIAATPFLVK 420 + ++ + + P +V+ Sbjct: 612 VSVTKSNLLVFIRPTIVR 629 >gi|312143742|ref|YP_003995188.1| type II and III secretion system protein [Halanaerobium sp. 'sapolanicus'] gi|311904393|gb|ADQ14834.1| type II and III secretion system protein [Halanaerobium sp. 'sapolanicus'] Length = 431 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 25/237 (10%) Query: 190 IAGED----QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 IAG D QV +K I E+ R+ +K++G SF D G Sbjct: 166 IAGLDRPQKQVLIKARIEEISRNKVKELGI-----NPDQLSELSFIKDDSG--------- 211 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTG 303 S++ + R ++ L LE A LA P+L + Q A G Q K V Sbjct: 212 SIEKI--RVNWPDTLKILEEEGASNILANPSLMTLDRQKAKLVIGDQIPVKLERVEGDNI 269 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVEL 362 +S++ + G+VL F P +++ +I L I+ V+ IG D +P+ R A+TTV L Sbjct: 270 VSSLSYIEAGIVLEFLPKIINDNQILLEIKPSVNS--IGQVVSDGLPAVNSRSAETTVIL 327 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + + GL+K+D + IP S++P+ G LF++ + +E+ I +P ++ Sbjct: 328 ENEQVLAIGGLIKEDEIKSLSKIPFFSELPLFGNLFKSEKSTVMNSELMIFISPEII 384 >gi|85859832|ref|YP_462034.1| general secretion pathway protein D [Syntrophus aciditrophicus SB] gi|85722923|gb|ABC77866.1| general secretion pathway protein D [Syntrophus aciditrophicus SB] Length = 717 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 120/273 (43%), Gaps = 28/273 (10%) Query: 186 NLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 NLLN+ QV ++ TI E+ + G + I S G S+ GK Sbjct: 449 NLLNLLQALDVPARQVLIEATIVELTLTDELKYGVEWFIRNSWDG--DSYTLGTLGKLGL 506 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQ- 292 E + + FE ++ AL + L+ P L + A+ G GQ Sbjct: 507 EPLGLTYAFLSRTGQFEALISALAEKSKANILSTPRLMVLDNMEATIQVGKDVPTVTGQI 566 Query: 293 ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 T S++ + S+ GV+L PT+ + G + L I EVS+ GD P Sbjct: 567 STLDSVNTTDSTSVSQSIQYRSTGVMLKVKPTINTEGLMTLEITQEVSDIAETPGVGDSP 626 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG-IPLLSKIPILGALFRNSRFNREET 408 R+ +T++ G TIVL GL++++ Q L E +PLL IPILG LF+ + +++T Sbjct: 627 IILTRRINTSIIAAHGQTIVLGGLMQEN-QSLGESKVPLLGDIPILGNLFKATSKTKDKT 685 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 E+ + TP + L+ P+D + D + Sbjct: 686 ELLVLVTPTI--------LTDPNDAVKITDQLR 710 >gi|304411539|ref|ZP_07393152.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS183] gi|307306685|ref|ZP_07586427.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica BA175] gi|304350066|gb|EFM14471.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS183] gi|306910653|gb|EFN41082.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica BA175] Length = 559 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 121/276 (43%), Gaps = 44/276 (15%) Query: 179 SSSKKVMNLLNIAG---EDQVTLKVTIAEV-----------RRDILKQIGFQHSITGSSS 224 S ++V LN A + QV L+ I EV ++L +G + G+S Sbjct: 269 SELRQVRTFLNSAESHLQRQVILEAKIIEVTLSDGYQQGIQWENVLGHVGNTNVNFGTSK 328 Query: 225 GP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 GP S + GG S+KG F T+++ L+ + L+ P +TA + Sbjct: 329 GPGLSDKITSAIGGV-----TSLSIKGS----DFTTMINLLDTQGDVDVLSSPRVTASNN 379 Query: 283 QSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRI 332 Q A G + T SST GAT VTT G+ L TP + S G + L + Sbjct: 380 QKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFFSGIALDVTPQIDSDGNVLLHV 439 Query: 333 Q---TEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +V E + D + +R++DT + SG +++ GL+K + ++ Sbjct: 440 HPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAASGDVVIIGGLMKSENTEVVS 499 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP LG LF+N +++TE+ I P +V Sbjct: 500 QVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535 >gi|163849487|ref|YP_001637530.1| general secretion pathway protein D [Methylobacterium extorquens PA1] gi|163661092|gb|ABY28459.1| general secretion pathway protein D [Methylobacterium extorquens PA1] Length = 794 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 32/283 (11%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 E + + + + RNQY K++ +L A QV L+ IAEV + Q G Q + Sbjct: 473 EANNSLVISATRNQY-----DKILRILGRLDAMPTQVLLETVIAEVTLNNELQFGVQWFL 527 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD-------FSVKGV------LDRFSFETVLHALERA 266 +SG + A + V++G + +GV L+ F VL+AL+ Sbjct: 528 --KNSGSRFNLAQADTNRSVAQGTSGTDALIKAAARGVPGFNYLLNASDFNVVLNALQGV 585 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATS------VTTHDYGVVLHFT 319 T + ++ P +T + ++A G Q + + S A + D GV+L T Sbjct: 586 TRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVILSVT 645 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P V G + L I EVS+ V+ ++ P+ R R+ T+V + G ++ + G++++ Sbjct: 646 PRVNKNGLVVLDINQEVSD-VVKTTTSEINSPTIRQRRVATSVAVNDGHSLAIGGMVQEK 704 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 Q E +PLL +PI+G FRN R TE+ + P +++ Sbjct: 705 AQITNESVPLLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIR 747 >gi|152999034|ref|YP_001364715.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS185] gi|151363652|gb|ABS06652.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS185] Length = 559 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 121/276 (43%), Gaps = 44/276 (15%) Query: 179 SSSKKVMNLLNIAG---EDQVTLKVTIAEV-----------RRDILKQIGFQHSITGSSS 224 S ++V LN A + QV L+ I EV ++L +G + G+S Sbjct: 269 SELRQVRTFLNSAESHLQRQVILEAKIIEVTLSDGYQQGIQWENVLGHVGNTNVNFGTSK 328 Query: 225 GP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 GP S + GG S+KG F T+++ L+ + L+ P +TA + Sbjct: 329 GPGLSDKITSAIGGV-----TSLSIKGS----DFTTMINLLDTQGDVDVLSSPRVTASNN 379 Query: 283 QSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRI 332 Q A G + T SST GAT VTT G+ L TP + S G + L + Sbjct: 380 QKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFFSGIALDVTPQIDSDGNVLLHV 439 Query: 333 Q---TEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +V E + D + +R++DT + SG +++ GL+K + ++ Sbjct: 440 HPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAASGDVVIIGGLMKSENTEVVS 499 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP LG LF+N +++TE+ I P +V Sbjct: 500 QVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535 >gi|28198648|ref|NP_778962.1| general secretory pathway protein D precursor [Xylella fastidiosa Temecula1] gi|182681332|ref|YP_001829492.1| general secretion pathway protein D [Xylella fastidiosa M23] gi|28056739|gb|AAO28611.1| general secretory pathway protein D precursor [Xylella fastidiosa Temecula1] gi|182631442|gb|ACB92218.1| general secretion pathway protein D [Xylella fastidiosa M23] Length = 775 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 38/245 (15%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S ++S GK S G ++ G + +++AL++ T +R L P++ Sbjct: 534 GLPSAAARSGWKSIAGKVTSNGLAWTFLG----KNAAAIINALDQVTQVRLLQTPSVFVR 589 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQT 334 + A+ G + + S +TG S +T+ D GV+L P V G + L I Sbjct: 590 NNAEATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQ 649 Query: 335 EVSEPVIGVNAGDMPS------------------YRVRKADTTVELPSGGTIVLAGLLKD 376 EVS P G +P+ R+ T + SG TI+LAGL+ Sbjct: 650 EVSTP------GSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDS 703 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYS 435 + + G+P LSK+PI+G LF N EI + TP +V+ P R+L+ D YS Sbjct: 704 NSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLT---DEYS 760 Query: 436 VEDDA 440 + +A Sbjct: 761 QKFNA 765 >gi|239787173|emb|CAR94716.1| wmpD protein [Pseudoalteromonas ruthenica] Length = 688 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 105/220 (47%), Gaps = 18/220 (8%) Query: 218 SITGSSSGP----SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 ++ GS SG S++ D G GG + + + + ++ A+ T LA Sbjct: 412 NVVGSESGVVTPISRTEEGDLGPLASLLGGINGLAMGIVKNDWGAIVQAVSNDTNSNILA 471 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGR 327 P++T + + AS G Q + SSTG+ +V + GV L TP + Sbjct: 472 TPSITTMDNEEASMIVG-QEVPIITGSSTGSNNENPFQTVDRQEVGVKLKVTPQINDGSA 530 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L I+ EVS V G A D+ S R TTV GG +VL GL+ +D+Q+ +PL Sbjct: 531 VQLTIEQEVSN-VAGSTAVDI-SINKRAITTTVLADDGGMVVLGGLIDEDVQESVSKVPL 588 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 L IP+LG LF+++ ++ + + + ++P +RD+ Sbjct: 589 LGDIPVLGHLFKSTSTSKRKRNLIV-----FIRPTILRDI 623 >gi|160873627|ref|YP_001552943.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS195] gi|160859149|gb|ABX47683.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS195] gi|315265856|gb|ADT92709.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS678] Length = 559 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 121/276 (43%), Gaps = 44/276 (15%) Query: 179 SSSKKVMNLLNIAG---EDQVTLKVTIAEV-----------RRDILKQIGFQHSITGSSS 224 S ++V LN A + QV L+ I EV ++L +G + G+S Sbjct: 269 SELRQVRTFLNSAESHLQRQVILEAKIIEVTLSDGYQQGIQWENVLGHVGNTNVNFGTSK 328 Query: 225 GP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 GP S + GG S+KG F T+++ L+ + L+ P +TA + Sbjct: 329 GPGLSDKITSAIGGV-----TSLSIKGS----DFTTMINLLDTQGDVDVLSSPRVTASNN 379 Query: 283 QSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRI 332 Q A G + T SST GAT VTT G+ L TP + S G + L + Sbjct: 380 QKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFFSGIALDVTPQIDSDGNVLLHV 439 Query: 333 Q---TEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +V E + D + +R++DT + SG +++ GL+K + ++ Sbjct: 440 HPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAASGDVVIIGGLMKSENTEVVS 499 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP LG LF+N +++TE+ I P +V Sbjct: 500 QVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535 >gi|313891897|ref|ZP_07825499.1| bacterial type II/III secretion system short domain protein [Dialister microaerophilus UPII 345-E] gi|313119672|gb|EFR42862.1| bacterial type II/III secretion system short domain protein [Dialister microaerophilus UPII 345-E] Length = 405 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 28/227 (12%) Query: 193 EDQVTLKVTIAEVRRDILKQIGF------------QHSITGSSSGPSKSF---AADFGGK 237 E QV ++ + V R K +G Q ++ SS S+ D+ G Sbjct: 166 EKQVKVEAEVLAVNRSYAKDLGIDWQFKSLTGQAEQRNVYDKSSKTKTSYLKIPEDYAG- 224 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLY 295 +S G S+ G F F+ L+AL + LA+P + ++G++A G + L Sbjct: 225 -ISYGK--SITGNPYTFFFQAKLNALLSDGKAKILAKPNVVTLNGRTAEILIGSKIPVLV 281 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-- 353 + + + T TS+ D G+ L +TP V I I EVS P + +M +YR+ Sbjct: 282 EHMENGTKTTSIEYKDAGIKLTYTPNVSKNSEITADIIAEVSTPYL---VPEMKAYRIVT 338 Query: 354 RKADTTVELPSGGTIVLAGLL-KDDIQQLKEGIPLLSKIPILGALFR 399 R+A TTV L SG + + GL+ K++ +++ +P+L IPILG LF+ Sbjct: 339 RQAHTTVRLKSGDMLTIGGLIDKEEANNIRK-VPVLGDIPILGKLFQ 384 >gi|325294586|ref|YP_004281100.1| general secretion pathway protein D [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065034|gb|ADY73041.1| general secretion pathway protein D [Desulfurobacterium thermolithotrophum DSM 11699] Length = 630 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 111/246 (45%), Gaps = 28/246 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVL-- 251 QV ++V I E+ D L Q+G + S G F G + G S G+L Sbjct: 342 QVFVEVQIVEMSMDKLLQLGVEWKFL--SRGNLVPFGGSLYGNLPLQAGYPSASPGLLLG 399 Query: 252 ------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA- 304 D +L+A + + +A P + + + A ++ K + STG Sbjct: 400 IAKWRGDTPDIGLLLNAYAKEGGVNVIATPQILTLDNEEAEI-----NISKVIPYSTGVK 454 Query: 305 -----TSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVR 354 V ++DY G+ L TP + + G + L+I +V E V+G D P R Sbjct: 455 YDANNNPVISYDYKDVGITLKITPHITASGEVRLKIYEKV-EDVVGYANADQTAPITSKR 513 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +A TTV++ G T+V+ GL+K E +P+L IP+LG LF+ + E+T + + Sbjct: 514 EAKTTVDVQDGQTLVIGGLIKSKKLTTIEKVPVLGNIPVLGNLFKKTGHQIEKTNLLVFI 573 Query: 415 TPFLVK 420 TP +V+ Sbjct: 574 TPRVVR 579 >gi|88861068|ref|ZP_01135703.1| General secretion pathway protein D [Pseudoalteromonas tunicata D2] gi|18643169|gb|AAL76242.1|AF441248_2 WmpD [Pseudoalteromonas tunicata] gi|88816996|gb|EAR26816.1| General secretion pathway protein D [Pseudoalteromonas tunicata D2] Length = 689 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 10/189 (5%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------S 306 R + +L A+ T LA P++T + + AS G Q + S TG + Sbjct: 450 RGDWGAILQAVSTDTNSNILATPSVTTMDNEEASMIVG-QEVPIITGSQTGNNNTNPFQT 508 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V + G+ L TP + + L I+ EVS V G A D+ + R+ TTV G Sbjct: 509 VERQEVGIKLKVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-TINKREVTTTVLADDGA 566 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MR 425 +VL GL+ +D+Q+ +PLL +PI+G LF+++ NR + + I P +++ A M Sbjct: 567 MVVLGGLIDEDVQESVSKVPLLGDLPIIGHLFKSTSTNRRKRNLLIFIRPTIIRDSATMN 626 Query: 426 DLSRPDDHY 434 LS +Y Sbjct: 627 QLSNSKYNY 635 >gi|149174476|ref|ZP_01853102.1| Type IV pilin multimeric outer membrane protein [Planctomyces maris DSM 8797] gi|148846586|gb|EDL60923.1| Type IV pilin multimeric outer membrane protein [Planctomyces maris DSM 8797] Length = 799 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 15/198 (7%) Query: 226 PSKSFAADFGG-KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 P+ F AD G K+ GD S + ALE T +A P L A++ Q Sbjct: 505 PTGQFIADVAGLKYGFLHGDIS-----------GFIEALEDVTETNLIASPQLRALNKQK 553 Query: 285 ASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A G + Y TV+ + T +V D G+VL+ P + G+I + + E S I Sbjct: 554 AELIIGDRISYSTVTQNGNTSIQNVNFLDSGIVLNLRPFITPDGQIRMEVHPERSSATIN 613 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + ++P R + T V + G T+V+ GL+++ + +P L +P++G FR R Sbjct: 614 PST-NLPDLRTTEVTTNVMVRDGHTVVIGGLIEERTSDTRNQVPFLGALPVIGNAFRQQR 672 Query: 403 FNREETEIFIAATPFLVK 420 TE+ + TP +V+ Sbjct: 673 EITNRTELIVLITPRIVR 690 >gi|114328429|ref|YP_745586.1| general secretion pathway protein D [Granulibacter bethesdensis CGDNIH1] gi|114316603|gb|ABI62663.1| general secretion pathway protein D [Granulibacter bethesdensis CGDNIH1] Length = 779 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 8/173 (4%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308 S + + L+ T ++ L+ P L + + A G Y T+ S +V+ Sbjct: 557 SSQLAMTLLQSVTKVQVLSSPELMVLDNEPARLQVGALVPYLTAQSQATIGQSAIINAVS 616 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGG 366 GV+L+ TP V + G + L I EVS+ I N P+++ R + V + G Sbjct: 617 YQQTGVILNVTPRVNNSGLVTLDISQEVSDVDTSINTNGISSPAFQQRSVQSRVVVQDGQ 676 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T+ LAGL++D+ + G+P L +P+LG++F NR TE+ I TP ++ Sbjct: 677 TVGLAGLIRDNNSRANGGVPFLKDVPVLGSVFGQQNNNRSRTELLILVTPHVI 729 >gi|325926645|ref|ZP_08187959.1| general secretion pathway protein D [Xanthomonas perforans 91-118] gi|325542997|gb|EGD14446.1| general secretion pathway protein D [Xanthomonas perforans 91-118] Length = 763 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 105/239 (43%), Gaps = 38/239 (15%) Query: 221 GSSSGPSKSFAADFGGKFV-SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G S ++ D GK +EG +S G + ++ AL++ T +R L P++ Sbjct: 521 GLPSAAGRNIWGDIAGKVTGTEGLAWSFLGK----NAAAIITALDKVTNVRLLQTPSVFV 576 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQ 333 + A+ G + + S +TG + T++ D GV+L P V G + L I Sbjct: 577 RNNAEATLNVGSRIAINSTSINTGIGTDTSYSSVQYIDTGVILKVRPRVTKDGMVFLDIV 636 Query: 334 TEVSEPVIGVNAGDMPS-----------------YRVRKADTTVELPSGGTIVLAGLLKD 376 EVS P GD P+ R+ T + SG TI+LAGL+ D Sbjct: 637 QEVSSP------GDRPAACTSATATINAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDD 690 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434 +G+P LSK+P++GALF E+ + TP +V+ P R+L+ D Y Sbjct: 691 TTSDTSDGVPFLSKLPVVGALFGTKGKTSNRREVIVLITPSIVRNPQEARNLT---DEY 746 >gi|148555505|ref|YP_001263087.1| general secretion pathway protein D [Sphingomonas wittichii RW1] gi|148500695|gb|ABQ68949.1| general secretion pathway protein D [Sphingomonas wittichii RW1] Length = 682 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 116/259 (44%), Gaps = 38/259 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSF--------------AADFGG 236 QV ++ I E+ D +Q+ Q I ++ SG + SF + G Sbjct: 390 QVLIEAAIVEISGDQAEQLAVQLGIGAAAINRASGGATSFTSPGLPLQSILTAIGSPAAG 449 Query: 237 KFVSEGGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +S GG ++ RF +F +L A+ ++T L+ P+LT + + A G Sbjct: 450 AVLSNGGSANI-----RFGDNFSILLQAIGQSTRSNLLSTPSLTTLDNEPAEIVVGQNVP 504 Query: 295 YKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGD 347 ++T S ST T++ D G+ L P + + L + EVS V A D Sbjct: 505 FRTGSFSTDGNTINPFTTIERQDVGLTLRVVPRIHQGNVVRLEVAQEVSSLTNAVTGAAD 564 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + R R T+V G TIVL GL+ DD Q + +P+L IPI G LFR+ + + + Sbjct: 565 LITNR-RSIQTSVLADDGQTIVLGGLISDDRTQTRSQVPILGDIPIAGELFRSRKESHVK 623 Query: 408 TEIFIAATPFLVKPVAMRD 426 +F+ +KP +RD Sbjct: 624 RTLFV-----FLKPTILRD 637 >gi|332535166|ref|ZP_08410973.1| type II secretion outer membrane pore forming protein PulD [Pseudoalteromonas haloplanktis ANT/505] gi|332035385|gb|EGI71885.1| type II secretion outer membrane pore forming protein PulD [Pseudoalteromonas haloplanktis ANT/505] Length = 687 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 10/180 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A+ T LA P++T + + AS G Q + S TG+ +V Sbjct: 453 WGAIIQAVATDTNSNILATPSITTMDNEEASILVG-QEVPIITGSQTGSNNANPFQTVER 511 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + G+ L TP + + L I+ EVS V G A D+ S R TTV GG +V Sbjct: 512 QEVGIKLIVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRAIKTTVMADDGGMVV 569 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLS 428 L GL+ +D+Q+ +PLL IPILG LFR++ R + + + P +++ V+M LS Sbjct: 570 LGGLIDEDVQESVSKVPLLGDIPILGHLFRSTNTTRRKRNLIVFIRPTIIRDGVSMNKLS 629 >gi|329121951|ref|ZP_08250564.1| type II and III secretion system protein [Dialister micraerophilus DSM 19965] gi|327467397|gb|EGF12896.1| type II and III secretion system protein [Dialister micraerophilus DSM 19965] Length = 405 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 28/227 (12%) Query: 193 EDQVTLKVTIAEVRRDILKQIGF------------QHSITGSSSGPSKSF---AADFGGK 237 E QV ++ + V R K +G Q ++ SS S+ D+ G Sbjct: 166 EKQVKVEAEVLAVNRSYAKDLGIDWQFKSLTGQAEQRNVYDKSSKTKTSYLKIPEDYAG- 224 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLY 295 +S G S+ G F F+ L+AL + LA+P + ++G++A G + L Sbjct: 225 -ISYGK--SITGNPYTFFFQAKLNALLSDGKAKILAKPNVVTLNGRTAEILIGSKIPVLV 281 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-- 353 + + + T TS+ D G+ L +TP V I I EVS P + +M +YR+ Sbjct: 282 EHMENGTKTTSIEYKDAGIKLTYTPNVSKNSEITADIIAEVSTPYL---VPEMKAYRIVT 338 Query: 354 RKADTTVELPSGGTIVLAGLL-KDDIQQLKEGIPLLSKIPILGALFR 399 R+A TTV L SG + + GL+ K++ +++ +P+L IPILG LF+ Sbjct: 339 RQAHTTVRLKSGDMLTIGGLIDKEEANNIRK-VPVLGDIPILGKLFQ 384 >gi|71274709|ref|ZP_00650997.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Dixon] gi|170730050|ref|YP_001775483.1| general secretory pathway protein D [Xylella fastidiosa M12] gi|71164441|gb|EAO14155.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Dixon] gi|167964843|gb|ACA11853.1| general secretory pathway protein D precursor [Xylella fastidiosa M12] Length = 775 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 38/245 (15%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S +S GK S G ++ G + +++AL++ T +R L P++ Sbjct: 534 GLPSAAGRSGWKSIAGKVTSNGLAWTFLGK----NAAAIINALDQVTQVRLLQTPSVFVR 589 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQT 334 + A+ G + + S +TG S +T+ D GV+L P V G + L I Sbjct: 590 NNAEATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQ 649 Query: 335 EVSEPVIGVNAGDMPS------------------YRVRKADTTVELPSGGTIVLAGLLKD 376 EVS P G +P+ R+ T + SG TI+LAGL+ Sbjct: 650 EVSTP------GSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDS 703 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYS 435 + + G+P LSK+PI+G LF N EI + TP +V+ P R+L+ D YS Sbjct: 704 NSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLT---DEYS 760 Query: 436 VEDDA 440 + +A Sbjct: 761 QKFNA 765 >gi|71899610|ref|ZP_00681765.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] gi|71730652|gb|EAO32728.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] Length = 775 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 38/245 (15%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S +S GK S G ++ G + +++AL++ T +R L P++ Sbjct: 534 GLPSAAGRSGWKSIAGKVTSNGLAWTFLGK----NAAAIINALDQVTQVRLLQTPSVFVR 589 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQT 334 + A+ G + + S +TG S +T+ D GV+L P V G + L I Sbjct: 590 NNAEATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQ 649 Query: 335 EVSEPVIGVNAGDMPS------------------YRVRKADTTVELPSGGTIVLAGLLKD 376 EVS P G +P+ R+ T + SG TI+LAGL+ Sbjct: 650 EVSTP------GSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDS 703 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYS 435 + + G+P LSK+PI+G LF N EI + TP +V+ P R+L+ D YS Sbjct: 704 NSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLT---DEYS 760 Query: 436 VEDDA 440 + +A Sbjct: 761 QKFNA 765 >gi|292493619|ref|YP_003529058.1| general secretion pathway protein D [Nitrosococcus halophilus Nc4] gi|291582214|gb|ADE16671.1| general secretion pathway protein D [Nitrosococcus halophilus Nc4] Length = 767 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 124/247 (50%), Gaps = 22/247 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQ---HSITGSSSGPSK-SFAADFGGKFVSEGGDFSVKGV 250 QV ++ TIAEV+ Q G Q + G +G +F+ D G +G + + G Sbjct: 474 QVLVEATIAEVQLTDNLQYGLQWFFRNEVGEFTGTGAVNFSTDVGDNGFLQGVEGLLGGG 533 Query: 251 LDRFSF--ETVLHALERATA----IRTLAEPTLTAISGQSASFTSG-------GQHLYKT 297 ++ ++++ AL R A + L+ P L A+ Q+A+ G GQ Sbjct: 534 GFTYALTDDSIVRALLRTLASDSKLNVLSSPQLLALDNQTAAIRVGDQVPILTGQTAGLA 593 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPV-IGVNAGDMPSYRV 353 + +T + V D GV+L TP V + GR+ L I+ T+V +PV +G + + ++ Sbjct: 594 GTGNTLTSQVQFRDTGVLLTVTPRVNAGGRVTLEIRQEVTDVGDPVTVGSDIQNF-TFLQ 652 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R ++ V + SG TIVL GL++D G+P L K+P +G LF ++ +++ TE+ + Sbjct: 653 RTFESVVTVQSGETIVLGGLIRDRDSFTDSGVPFLYKLPFIGPLFGSTTRDKQRTELIVL 712 Query: 414 ATPFLVK 420 TP +V+ Sbjct: 713 MTPRVVR 719 >gi|300702677|ref|YP_003744277.1| general secretory pathway protein d, type II secretion system [Ralstonia solanacearum CFBP2957] gi|299070338|emb|CBJ41633.1| General Secretory Pathway protein D, type II secretion system [Ralstonia solanacearum CFBP2957] Length = 809 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 19/193 (9%) Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291 GG+F GV ++ + +L AL ++ L+ P L + GQ+ T+G Sbjct: 519 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 575 Query: 292 QHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347 Y SS T T D G+ L P + G + ++I E S V G NA Sbjct: 576 ---YAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQESSAVVNGTQNATQ 632 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ VR +T V G IVL GLL+D+ Q ++ +P L IPILGALFR+ R++ Sbjct: 633 GPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPILGALFRSESKERKK 692 Query: 408 TEIFIAATPFLVK 420 T + + P++++ Sbjct: 693 TNLLVFLRPYILR 705 >gi|315500691|ref|YP_004089492.1| type II and III secretion system protein [Asticcacaulis excentricus CB 48] gi|315418703|gb|ADU15341.1| type II and III secretion system protein [Asticcacaulis excentricus CB 48] Length = 626 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 13/182 (7%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG---ATSVT 308 R + L+AL + +R ++ P +TA +AS G Q + K S ST A V+ Sbjct: 423 RSDIKAALNALSSKSKVRIVSAPKMTARENATASLQIGDQVPIVKQNSQSTNGGNAPIVS 482 Query: 309 THDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPS 364 T DY GV L TP VL+ R+ + + EVS +G D P+ + RK ++++ +P Sbjct: 483 TIDYRDTGVTLKVTPRVLNDNRVAMDVTQEVSSVARTQTSGIDSPTIKQRKLESSLIIPE 542 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G + L GL+ + G PLL IP LG LF+ N++ TE+ + L++ + Sbjct: 543 GTVVALGGLISSSESDSEGGAPLLKDIPGLGNLFKQRARNKDRTELIV-----LIQVTIL 597 Query: 425 RD 426 RD Sbjct: 598 RD 599 >gi|34305612|gb|AAQ63613.1| GspD [Ralstonia solanacearum] Length = 709 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 19/193 (9%) Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291 GG+F GV ++ + +L AL ++ L+ P L + GQ+ T+G Sbjct: 419 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 475 Query: 292 QHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347 Y SS T T D G+ L P + G + ++I E S V G NA Sbjct: 476 ---YAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLVKMQIFQESSAVVNGTQNATQ 532 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ VR +T V G IVL GLL+D+ Q ++ +P L IPILGALFR+ R++ Sbjct: 533 GPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPILGALFRSESKERKK 592 Query: 408 TEIFIAATPFLVK 420 T + + P++++ Sbjct: 593 TNLLVFLRPYILR 605 >gi|90417988|ref|ZP_01225900.1| putative general secretion pathway (GSP) protein D [Aurantimonas manganoxydans SI85-9A1] gi|90337660|gb|EAS51311.1| putative general secretion pathway (GSP) protein D [Aurantimonas manganoxydans SI85-9A1] Length = 700 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 128/264 (48%), Gaps = 22/264 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG----V 250 QV + VT+AEVR + + G Q+ I G + + + +++G V G V Sbjct: 440 QVAVNVTMAEVRLNDQLRYGVQYFIKSGDIGLGRDKGSVGLFRTIADGIAREVPGFNFVV 499 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATS-- 306 S + VL+AL+ T +R L+ P+L + + A F G Q + +TV+S A + Sbjct: 500 GSESSPDIVLNALDAVTDVRVLSSPSLVVMENEVAKFRVGDQIPIVTRTVNSVEDANAPI 559 Query: 307 ---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVEL 362 V D G++++ P + G + + I+ E+S + NAG + P R +T+ + Sbjct: 560 SNEVEYRDTGIIMNVRPRIAENGVVTMVIEQEISS--VTANAGSLTPVISNRSVASTISV 617 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G T++L GL+ + ++GIP L+++ ++G LF + TE+ I L++P Sbjct: 618 VDGQTVLLGGLISEQSDVGRDGIPGLNRLKVVGNLFGSKSRADVRTELLI-----LIRPS 672 Query: 423 AMRDLSRPDDHYSVEDDAKAFFFN 446 +RD D +V + +A +N Sbjct: 673 VIRD---GRDAQNVAESLRAQMWN 693 >gi|207722789|ref|YP_002253224.1| general secretory pathway protein d [Ralstonia solanacearum MolK2] gi|206587973|emb|CAQ18554.1| general secretory pathway protein d [Ralstonia solanacearum MolK2] Length = 809 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 19/193 (9%) Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291 GG+F GV ++ + +L AL ++ L+ P L + GQ+ T+G Sbjct: 519 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 575 Query: 292 QHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347 Y SS T T D G+ L P + G + ++I E S V G NA Sbjct: 576 ---YAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLVKMQIFQESSAVVNGTQNATQ 632 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ VR +T V G IVL GLL+D+ Q ++ +P L IPILGALFR+ R++ Sbjct: 633 GPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPILGALFRSESKERKK 692 Query: 408 TEIFIAATPFLVK 420 T + + P++++ Sbjct: 693 TNLLVFLRPYILR 705 >gi|291279644|ref|YP_003496479.1| type IV pilus assembly protein PilQ [Deferribacter desulfuricans SSM1] gi|290754346|dbj|BAI80723.1| type IV pilus assembly protein PilQ [Deferribacter desulfuricans SSM1] Length = 406 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 19/241 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF------AADFGGKFVS-----EGG 243 QV ++ I EV + +++G Q S + + +K F D G V+ GG Sbjct: 169 QVMIEAKIVEVSKTGSRELGLQWSANTNINSTNKYFPNTISIGGDTSGYMVNLPITNPGG 228 Query: 244 DFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S+ +L +S + L ALE+ + +++P + ++ + A SG + YK + Sbjct: 229 TLSL--LLGNYSGSFILDAKLQALEQQGLAKIVSQPKIVTMNNKEAKIESGFEFHYKVID 286 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 T V + + + L TP V I L+I + SE P RKA+T Sbjct: 287 DD--DTDVESDEAKLSLTVTPQVTPDNNILLKIVVDKSELDFSKTVDGYPLKFTRKAETY 344 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V+L G T V+ GL+++ +P LSKIP++G LF++ + + ++ I TP ++ Sbjct: 345 VKLKDGETTVIGGLVQEKQSNSTSAVPGLSKIPLIGWLFKSKTNSHDLNDLVIFITPKII 404 Query: 420 K 420 K Sbjct: 405 K 405 >gi|83746397|ref|ZP_00943449.1| GspD [Ralstonia solanacearum UW551] gi|83726938|gb|EAP74064.1| GspD [Ralstonia solanacearum UW551] Length = 809 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 19/193 (9%) Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291 GG+F GV ++ + +L AL ++ L+ P L + GQ+ T+G Sbjct: 519 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 575 Query: 292 QHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347 Y SS T T D G+ L P + G + ++I E S V G NA Sbjct: 576 ---YAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLVKMQIFQESSAVVNGTQNATQ 632 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ VR +T V G IVL GLL+D+ Q ++ +P L IPILGALFR+ R++ Sbjct: 633 GPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPILGALFRSESKERKK 692 Query: 408 TEIFIAATPFLVK 420 T + + P++++ Sbjct: 693 TNLLVFLRPYILR 705 >gi|319795562|ref|YP_004157202.1| type II and iii secretion system protein [Variovorax paradoxus EPS] gi|315598025|gb|ADU39091.1| type II and III secretion system protein [Variovorax paradoxus EPS] Length = 533 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 7/175 (4%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P L+ SG A + +GG+ +S+ GA SV YGV L+ P G I Sbjct: 328 LASPNLSTRSGGEAKYLAGGEIPLPALSTQ-GAGSVEFKPYGVRLNIKPIADGEGNISGS 386 Query: 332 IQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 I TEVS +P + V +P +R+ DT + +G TIVL+GLL + + +G+P L Sbjct: 387 ILTEVSSIDPSVAVQG--IPGLLIRRTDTEFNVKTGETIVLSGLLSRESSRASDGLPGLR 444 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 P++G FR + +E E+ + TP +V A R + +E D + F Sbjct: 445 NTPVIGRAFRADKDIDKEQEVVVFITPRVVD--AAWSQPRVERARQIEQDVGSNF 497 >gi|78049214|ref|YP_365389.1| type II secretory pathway component [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037644|emb|CAJ25389.1| type II secretory pathway component [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 759 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 84/309 (27%), Positives = 137/309 (44%), Gaps = 44/309 (14%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----F 215 AV + T L +S + SS + V+ L++ QV ++ IAEV + G F Sbjct: 447 AVAETNTLLVRSSAQAW--SSIRDVIERLDVM-PMQVHIEAQIAEVTLTGQLEYGVNWYF 503 Query: 216 QHSI--------TGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 ++++ TG + PS + D G + G ++ G + ++ AL+ Sbjct: 504 ENAVNAPVNADGTGGAGLPSAAGRGIWGDVSGSVTNNGLAWTFLGK----NAAAIISALD 559 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHF 318 R T +R L P++ + A+ G + + S +TG +SV D GV+L Sbjct: 560 RVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKV 619 Query: 319 TPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMP-SYRVRKADTTVELPSGG 366 P V G + L I EVS P VN+ R+ T + +G Sbjct: 620 RPRVTKDGMVFLDIVQEVSTPGARPAACTSASTTTVNSAACNVDINTRRVKTEAAVQNGD 679 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425 TI+LAGL+ D G+P+LSK+P++GALF N++ E+ + TP +V+ P R Sbjct: 680 TIMLAGLIDDSTSDGSAGLPILSKLPVVGALFGRKTQNKDRREVIVLITPSIVRNPQEAR 739 Query: 426 DLSRPDDHY 434 +L+ D Y Sbjct: 740 NLT---DEY 745 >gi|207744652|ref|YP_002261044.1| general secretory pathway protein d [Ralstonia solanacearum IPO1609] gi|206596059|emb|CAQ62986.1| general secretory pathway protein d [Ralstonia solanacearum IPO1609] Length = 777 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 19/193 (9%) Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291 GG+F GV ++ + +L AL ++ L+ P L + GQ+ T+G Sbjct: 487 NGGNF---GVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 543 Query: 292 QHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347 Y SS T T D G+ L P + G + ++I E S V G NA Sbjct: 544 ---YAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLVKMQIFQESSAVVNGTQNATQ 600 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ VR +T V G IVL GLL+D+ Q ++ +P L IPILGALFR+ R++ Sbjct: 601 GPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPILGALFRSESKERKK 660 Query: 408 TEIFIAATPFLVK 420 T + + P++++ Sbjct: 661 TNLLVFLRPYILR 673 >gi|15838128|ref|NP_298816.1| general secretory pathway protein D precursor [Xylella fastidiosa 9a5c] gi|9106563|gb|AAF84336.1|AE003982_9 general secretory pathway protein D precursor [Xylella fastidiosa 9a5c] Length = 775 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 38/245 (15%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S +S GK S G ++ G + +++AL++ T +R L P++ Sbjct: 534 GLPSAAGRSGWKSIAGKVTSNGLAWTFLGK----NAAAIINALDQVTQVRLLQTPSVFVR 589 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQT 334 + A+ G + + S +TG S +T+ D GV+L P V G + L I Sbjct: 590 NNAEATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQ 649 Query: 335 EVSEPVIGVNAGDMPS------------------YRVRKADTTVELPSGGTIVLAGLLKD 376 EVS P G +P+ R+ T + SG TI+LAGL+ Sbjct: 650 EVSTP------GSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDS 703 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYS 435 + + G+P LSK+PI+G LF N EI + TP +V+ P R+L+ D YS Sbjct: 704 NSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLT---DEYS 760 Query: 436 VEDDA 440 + +A Sbjct: 761 QKFNA 765 >gi|332304529|ref|YP_004432380.1| general secretion pathway protein D [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171858|gb|AEE21112.1| general secretion pathway protein D [Glaciecola agarilytica 4H-3-7+YE-5] Length = 690 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 17/228 (7%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G +S ++ G + A+ GG F V V D + VL A+ T L+ Sbjct: 416 GDPYSFDETTEGDYTALASLLGGV-----NGFLVGAVKDGWG--AVLQAVSTDTNSNVLS 468 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGR 327 P LT + + A F G Q + S+TG+ SV + G+ L TP + Sbjct: 469 TPHLTTLDNEEAFFIVG-QEVPIITGSTTGSNNTNPFQSVERQEIGIKLKVTPQINEGNA 527 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L I+ EVS + G + D+ + R+ T V + GGTIVL GL+ DD+Q+ +P+ Sbjct: 528 VQLLIEQEVSS-ISGATSVDILINK-REIKTNVIVDDGGTIVLGGLIDDDVQESVSKVPI 585 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHY 434 L IP +G LF+++ ++ + + + P +++ V D+SR +Y Sbjct: 586 LGDIPFIGNLFKSTTTSKSKRNLMVFIRPTIIRDGVTANDISRKKYNY 633 >gi|320334143|ref|YP_004170854.1| type II and III secretion system protein [Deinococcus maricopensis DSM 21211] gi|319755432|gb|ADV67189.1| type II and III secretion system protein [Deinococcus maricopensis DSM 21211] Length = 676 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 67/268 (25%), Positives = 125/268 (46%), Gaps = 27/268 (10%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---G 236 S K+ +L+ + QVT + ++ QI Q I + +++ D+ G Sbjct: 409 SDKRTNSLIVRGTQAQVTQIAELIPQLDQVVPQINVQVRIQEINETAARTLGVDWNAGFG 468 Query: 237 KFVSEGGDFSVKGVLDR------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 FV ++ + D + L+ALE + + + ++T SGQ + T+G Sbjct: 469 NFVVRIAQTGLQALFDPTRALAGINLGATLNALETQNMTKRVYDGSVTMQSGQRSVGTAG 528 Query: 291 GQHLYKTVSSST----GATSVTTH----------DYGVVLHFT-PTVLSPGRIGLRIQTE 335 G + +S+T G VT DYGV L F P V G I LR++ + Sbjct: 529 GAQNASSGASATIKSGGRLEVTIPSESGNIVRQIDYGVNLDFIDPQVAPDGTITLRVRGQ 588 Query: 336 VSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 V++P + G +P+ + +A TT+ SG T++L+GLL + + + G+P LS +P Sbjct: 589 VNQPASPITGGTLPNLLNFTNSEAQTTITFKSGQTVLLSGLLGTNESRNRTGVPFLSSLP 648 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420 ++G LF + ++ ++++ + T +V+ Sbjct: 649 VIGGLFGTEQTSKTQSQLLVVITGTVVR 676 >gi|227822850|ref|YP_002826822.1| general secretion pathway protein D, GspD [Sinorhizobium fredii NGR234] gi|227341851|gb|ACP26069.1| general secretion pathway protein D, GspD [Sinorhizobium fredii NGR234] Length = 692 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 26/243 (10%) Query: 195 QVTLKVTIAEVR-RDILK---QIGFQHSIT--GSSSGPSKSFAADFGG-KFVSEGGDFSV 247 QV L+ IAEV D LK + F+H+ G S S + AA F G + GD + Sbjct: 426 QVFLEAVIAEVSLNDELKFGLRWYFEHNSDAFGLSDLASGAVAATFPGFNWTHLAGDAQI 485 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTVSS 300 L AL T ++ ++ P L I+ Q A G Q + + Sbjct: 486 -----------ALQALSSVTNVKVISSPNLMVINNQQAKLQVGDQVPTVTQTSTSTSSAD 534 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTT 359 + SV D G++L TP + S GR+ L IQ EVS V +G D P+ + RK T Sbjct: 535 AAIVNSVELKDTGIILAVTPRINSSGRVMLDIQQEVSNVVETTTSGIDSPTIQQRKISTR 594 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + G ++ L GL+++ ++ +P+L IP+ G F++ TE+ I P +V Sbjct: 595 VVVNDGESLALGGLIQEKKSLGQKKMPVLGDIPLFGNAFKSKTDGINRTELIIFIRPRIV 654 Query: 420 KPV 422 + V Sbjct: 655 RDV 657 >gi|323135898|ref|ZP_08070981.1| general secretion pathway protein D [Methylocystis sp. ATCC 49242] gi|322398989|gb|EFY01508.1| general secretion pathway protein D [Methylocystis sp. ATCC 49242] Length = 817 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 133/301 (44%), Gaps = 42/301 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVR-RDILK------------QIGFQHSITGSSSGPSK 228 ++V+ L++ +QV L+ TIAEV+ D L+ GF S + P+ Sbjct: 509 RQVIETLDVM-PNQVFLEATIAEVKLNDTLRFGVRWFMQTHQNLFGFSSSANPAGPLPNT 567 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 + G V G +F R F+ + L+AL T + + P+LT + + A Sbjct: 568 PLGTNLLGANV--GANFPGFAYAFRAFNQQVTLNALNAITEVNVIQTPSLTVLDNRQAML 625 Query: 288 TSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G Q +T+SS + SV + GV+L TP + GRI L ++ EVS Sbjct: 626 QVGDQIPVQTLSSVSAIGNQFNSVNYTNTGVILAITPHISESGRIMLELEQEVSNVDPNT 685 Query: 344 NAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + P+ + R+ T V + +++L GL+KD + IP+ +P+ G LF++ Sbjct: 686 PPGSITPTIQQRRVKTQVVVNDSESLMLGGLVKDQRGRAATQIPVAGDVPVFGNLFKDKG 745 Query: 403 FNREETEIFIAATPFLVKP-----------------VAMRDLSRPDDHYSVEDDAKAFFF 445 ++TE+ I TP +V+ ++ R + RP D +E A+ F Sbjct: 746 DAVDKTELVIMITPHVVRSLDEGREITEEYKRKLLDISTRAIGRPHD---IEQSARRTLF 802 Query: 446 N 446 + Sbjct: 803 D 803 >gi|49613540|emb|CAG76991.1| putative type II secretion system protein [Pectobacterium atrosepticum SCRI1043] Length = 393 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 3/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + + + T Sbjct: 227 LMALEQESEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 286 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P +L GRI L ++ + P + GD + ++ T V + G TIVL G+ + Sbjct: 287 PDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQ 346 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P+LS+IP+ G LFRN E+ I TP L+ Sbjct: 347 QKKNSDRQVPILSEIPVFGHLFRNHTQQHTRRELVIFITPTLI 389 >gi|229220650|ref|YP_052181.2| putative outer membrane porin HofQ [Pectobacterium atrosepticum SCRI1043] Length = 383 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 3/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + + + T Sbjct: 217 LMALEQESEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 276 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P +L GRI L ++ + P + GD + ++ T V + G TIVL G+ + Sbjct: 277 PDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQ 336 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P+LS+IP+ G LFRN E+ I TP L+ Sbjct: 337 QKKNSDRQVPILSEIPVFGHLFRNHTQQHTRRELVIFITPTLI 379 >gi|320451127|ref|YP_004203223.1| general secretion pathway protein [Thermus scotoductus SA-01] gi|320151296|gb|ADW22674.1| general secretion pathway protein [Thermus scotoductus SA-01] Length = 754 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 20/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L+V I EV+ + + +G + ++I G + S D G + F L Sbjct: 532 QVNLRVRIQEVQSNFTRNLGIKWNTIAGGNVAAS---ILDSGLSLI-----FDSTRSLAA 583 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + L AL+R R L + T ++ Q+A SG L + V + D G Sbjct: 584 LNILATLEALQRQGLSRALRDVNQTVLNNQTARLQSGETFLIRRVVNDR--VERVPFDIG 641 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 +++ TP + + G+I L I+ EVS PV GD+ + + TT+ + G T+ Sbjct: 642 IIVEVTPQITADGQILLNIKAEVSGNVQRNPV----DGDVDRFTKQVVTTTLRVRDGQTV 697 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 VL GL + Q+++G+PLL IP++G LF+ + E+ + T ++K A R Sbjct: 698 VLGGLTSQENTQVQQGVPLLMDIPLIGELFKQRSQETTDRELLVVITADILKETASR 754 >gi|319789871|ref|YP_004151504.1| general secretion pathway protein D [Thermovibrio ammonificans HB-1] gi|317114373|gb|ADU96863.1| general secretion pathway protein D [Thermovibrio ammonificans HB-1] Length = 638 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 108/244 (44%), Gaps = 24/244 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248 QV ++V I E+ D L Q+G + S G F G + G S Sbjct: 347 QVFVEVQIVEMSMDKLLQMGVEWKFL--SRGNYVPFGGSLYGNLPLQPGYPSASPGLLLG 404 Query: 249 ------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSS 301 GV D +L+A + + +A P + + + A Y T V Sbjct: 405 IAKWRDGVPD---IGLLLNAYAKEGGVNVIATPQILTLDNEEAEINISKVIPYSTGVKYD 461 Query: 302 TGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKA 356 T V ++DY G+VL TP + + G + L++ +V E V+G D P R+A Sbjct: 462 TNNNPVISYDYKDVGIVLKITPHITASGEVRLKVYEKV-EDVVGYANADQTAPITSKREA 520 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 TTV++ G T+V+ GL+K E +P+L IP++G LF+ + E+T + + TP Sbjct: 521 KTTVDVHDGQTLVIGGLIKRKKLTTVEKVPVLGSIPVIGNLFKKTGHQIEKTNLLVFITP 580 Query: 417 FLVK 420 +V+ Sbjct: 581 HIVR 584 >gi|170739479|ref|YP_001768134.1| general secretion pathway protein D [Methylobacterium sp. 4-46] gi|168193753|gb|ACA15700.1| general secretion pathway protein D [Methylobacterium sp. 4-46] Length = 797 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 131/292 (44%), Gaps = 34/292 (11%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRD--------- 208 A E + + + + R QY +K++ +L A QV L+ IAEV + Sbjct: 474 ADETNNSLVISATRTQY-----EKILRILGRLDARPTQVLLETVIAEVTLNDKLEFGVQW 528 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV------LDRFSFETVLHA 262 LK G + ++ S + S + G VS +++GV L+ F VL+A Sbjct: 529 FLKNGGSRFNLAQSDTAASVASGTSGAGALVSA----AMRGVPGFNYLLNDADFHVVLNA 584 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGA------TSVTTHDYGVV 315 L T + L+ P +T + ++A G Q + K S A + D GV+ Sbjct: 585 LRGVTRVNVLSSPNITVLDNRTARLQIGDQVPIVKQSGQSALAGNAPILNQIELKDTGVI 644 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLL 374 L TP V G + L I EVS+ V + + P+ R R+ T+V + G ++ + G++ Sbjct: 645 LSVTPRVNKNGLVVLDINQEVSDVVPTTTSNINSPTIRQRRVATSVAVSDGHSLAIGGMV 704 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++ Q E +P+L +P++G FRN R TE+ + P +++ A D Sbjct: 705 QEKAQIGTEALPVLGDLPVIGPAFRNKSDLRVRTELIVFLRPKVIRGTADAD 756 >gi|87311311|ref|ZP_01093433.1| general secretion pathway protein D (precursor) [Blastopirellula marina DSM 3645] gi|87286051|gb|EAQ77963.1| general secretion pathway protein D (precursor) [Blastopirellula marina DSM 3645] Length = 1199 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 19/213 (8%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---VSSSTGATSVTTHD 311 S ++ AL++ + LA P + + Q A G + Y T V++ S+T + Sbjct: 884 SVNVLIRALQQDNRMEVLARPHVMTMDNQPAFIQVGQRVPYITDTQVTNQGTVNSITLEN 943 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDM---PSYRVRKADTTV 360 GV+L+ P + G + + +Q E SE P+ GD+ P + A TTV Sbjct: 944 TGVILNVIPRISPDGMVVMYVQAERSEVGNEADGIPISINQNGDVIRAPRINTQTATTTV 1003 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 SG TIVL GL++ + +PLL IP++G+LFR F+ + +E+ I TP +V Sbjct: 1004 SARSGQTIVLGGLIQKRTTVVSRRVPLLGDIPVVGSLFRYDSFDGDRSELMIILTPTVVD 1063 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 + +D+ R + E ++ V +IYG Sbjct: 1064 --SDQDVERVREQ---EMSRMSWCLADVAEIYG 1091 >gi|330444859|ref|ZP_08308514.1| general secretion pathway protein D [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489169|dbj|GAA03011.1| general secretion pathway protein D [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 677 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 26/217 (11%) Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEP 275 I + SG AA GG VKG S + ++ A++ + L+ P Sbjct: 418 IVTTESGDLAPMAAFLGG----------VKGAAAAISMGDWTALVTAVQANRNVNVLSTP 467 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIG 329 +T + Q A+ S GQ + T SSTG+ T+V D G+ L TP + + Sbjct: 468 NITVLDNQEANL-SVGQEVPVTTGSSTGSNNDNPFTTVERKDVGIQLKVTPQINEGDSVQ 526 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++I+ VS+ A D+ + R+ T+V + G I L GL+++ + ++ +P+L Sbjct: 527 MKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQKVPILG 585 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IP+LGALFR++ E+T + + ++P +RD Sbjct: 586 DIPVLGALFRSTNDQTEKTNLMV-----FIRPTILRD 617 >gi|240136813|ref|YP_002961280.1| putative General secretion pathway protein D [Methylobacterium extorquens AM1] gi|240006777|gb|ACS38003.1| putative General secretion pathway protein D [Methylobacterium extorquens AM1] Length = 792 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 130/283 (45%), Gaps = 32/283 (11%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 E + + + + RNQY K++ +L A QV L+ IAEV + Q G Q + Sbjct: 471 EANNSLVISATRNQY-----DKILRILGRLDAMPMQVLLETVIAEVTLNNELQFGVQWFL 525 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD-------FSVKGV------LDRFSFETVLHALERA 266 +SG + A + V++G + +GV L+ F VL+AL+ Sbjct: 526 --KNSGSRFNLAQADTNRSVAQGTSGTDALIKAAARGVPGFNYLLNASDFNVVLNALQGV 583 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATS------VTTHDYGVVLHFT 319 T + ++ P +T + ++A G Q + + S A + D GV+L T Sbjct: 584 TRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVILSVT 643 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P V G + L I EVS+ V+ ++ P+ R R+ T+V + G ++ + G++++ Sbjct: 644 PRVNKNGLVVLDINQEVSD-VVKTTTSEINSPTIRQRRVATSVAINDGHSLAIGGMVQEK 702 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 Q E +P+L +PI+G FRN R TE+ + P +++ Sbjct: 703 AQITNESVPVLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIR 745 >gi|218782642|ref|YP_002433960.1| type II and III secretion system protein [Desulfatibacillum alkenivorans AK-01] gi|218764026|gb|ACL06492.1| Type II and III secretion system protein [Desulfatibacillum alkenivorans AK-01] Length = 566 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/269 (25%), Positives = 112/269 (41%), Gaps = 43/269 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----------------GSSSGPSKSFAADFGGK 237 QV +K I E RD + +G Q G +SG + S A G Sbjct: 278 QVHIKANIVETTRDTARDLGVQWGWMYGRYDSLGNDTDFWLTPGGNSGSAASRDAPLTGG 337 Query: 238 FVSEGGDFSVKGVLDRFSF------------------------ETVLHALERATAIRTLA 273 + + G V G + +F E L AL A I L+ Sbjct: 338 YTAGTGSKGVSGQGNGINFPVDFEDAMGATMGLMFGKVGSNILEVQLSALADAGKINILS 397 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 P++T + Q+AS +G + Y T++ G V D ++L TP V+ G++ +++ Sbjct: 398 TPSITTLDNQTASTENGTEVPYVTINED-GDREVKFKDATLMLEITPHVIDEGQMKMKVS 456 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + E + N P ++ +T++ + +G T+V++GL K + GIP L IP Sbjct: 457 IKKDEVDLSRNVDGNPFILKKRTETSLIVRNGETVVISGLSKTRNTEGDTGIPWLKDIPG 516 Query: 394 LGALFRNSRFNREETEIFIAATP-FLVKP 421 LG LF++ + E+ I TP L KP Sbjct: 517 LGYLFKSESKSEAMEEVLIFLTPTVLPKP 545 >gi|146343151|ref|YP_001208199.1| general secretion pathway protein D [Bradyrhizobium sp. ORS278] gi|146195957|emb|CAL79984.1| General secretion pathway protein D [Bradyrhizobium sp. ORS278] Length = 768 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 13/186 (6%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATSVTTHDY--- 312 +L AL T+++ L+ P+L I+ Q+A+ G T S+ S+ T V T DY Sbjct: 567 ILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGSATVLSSSNTVVNTIDYRNT 626 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G++L P + + G + L ++ E+S A P+ RK + + + +G T++LAG Sbjct: 627 GIILRVVPRIAANGNVRLEVEQEISNVAAQTAASLTPTVSQRKVKSAISVANGQTVLLAG 686 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L+ + + GIP +IPILG F + TE+ I ++P +RD S D Sbjct: 687 LISEQQTGNRNGIPGFDEIPILGDTFSHQDKKGTRTELII-----FIRPQIIRDGS--DA 739 Query: 433 HYSVED 438 H E+ Sbjct: 740 HQVAEE 745 >gi|296446147|ref|ZP_06888095.1| general secretion pathway protein D [Methylosinus trichosporium OB3b] gi|296256341|gb|EFH03420.1| general secretion pathway protein D [Methylosinus trichosporium OB3b] Length = 785 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 8/180 (4%) Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT------H 310 + L AL + T + ++ P+LT + + A G Q T++ + VTT Sbjct: 573 QVTLSALNQITNVNIISTPSLTVLDNRQAVLQVGDQVPVTTLTGANTNGGVTTFNSVNYR 632 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIV 369 D GV+L TP + GR+ L ++ EVS G +A P+ + R+ T V + +++ Sbjct: 633 DTGVILSITPHINESGRVMLELEQEVSNVASGTSATSTTPTIKQRRVKTQVVVNDSESLM 692 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLS 428 L GL++D + IP++ IP+ G F++ + +TE+ I TP +V+ +A RD++ Sbjct: 693 LGGLIQDSSSRGSSQIPVIGDIPLFGNAFKSKTNSAGKTELLIMITPHVVRTLAEARDIT 752 >gi|163883892|gb|ABY48121.1| RcpA [Yersinia ruckeri] Length = 304 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/278 (25%), Positives = 126/278 (45%), Gaps = 28/278 (10%) Query: 65 DVQDVLVSDPTK-ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D D + S TK AD + ++ ++ K G A L K + + + +++ I+ Sbjct: 49 DEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKKNKPIHKVAVFVDKIISKA 108 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE--LSETFLSQSGRNQ---YAN 178 + +R DS I + + + +L G +T ++++ +E ++ S R + Y Sbjct: 109 KKRIRIEYPDSQININKLGEGYILTGTAQT-EEARETIEKIVANAIGSVPVRQEKWGYTI 167 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S + N + I +QV +K+TIAEV +D IG S G+ SG S F GK Sbjct: 168 HSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIGNVSG-SFHFTQFNAGK- 225 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 T++ A+ + R LAEP L+ +SG++ASF GG+ V Sbjct: 226 -----------------ISTLVQAINDESVARVLAEPNLSVLSGETASFLVGGE--LPIV 266 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 S++ +V+ ++G+ L+ V RI +++ EV Sbjct: 267 STTQNTINVSYKEFGIKLNIGAKVSESKRIRVKLDEEV 304 >gi|322830997|ref|YP_004211024.1| type IV pilus secretin PilQ [Rahnella sp. Y9602] gi|321166198|gb|ADW71897.1| type IV pilus secretin PilQ [Rahnella sp. Y9602] Length = 420 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 5/230 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + + L+++G + TG +F E F+ L Sbjct: 188 QVQLAAHIVTMNSESLRELGVRWGFTGEEPITKAVRMNNFSMGMPVENPIFTAGFNLAHI 247 Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 S + L ALE+ + +A P L Q+AS G + Y+ S ++G+TS+ + Sbjct: 248 SGRILDLELTALEQEDKVDIIASPRLLTAHMQTASIKQGTEIPYQVSSGASGSTSIEFKE 307 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + P + GRI L +Q + P I + G+ + ++ T V + +G TIV Sbjct: 308 AVLGMEVMPKIQRDGRIQLALQISQNMPGRSIKQSEGEALAIDKQEIKTQVTVKNGETIV 367 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + Q+ +P+L IP++G+LF++ N + E+ I TP L+ Sbjct: 368 LGGIFQRKNQKTDTKVPVLGDIPVVGSLFKHQYTNEQRRELVIFITPTLI 417 >gi|332143347|ref|YP_004429085.1| general secretion pathway protein D [Alteromonas macleodii str. 'Deep ecotype'] gi|327553369|gb|AEB00088.1| general secretion pathway protein D [Alteromonas macleodii str. 'Deep ecotype'] Length = 681 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 10/185 (5%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + GV++ + V+ A+ T LA P LT + + A F G Q + ++ Sbjct: 434 GANGLIAGVIEN-GWGAVVQAVSTDTNSNILATPHLTTMDNEEAFFIVG-QEVPIITGTT 491 Query: 302 TGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 TG+ +V + G+ L TP + + L I+ EVS V G + D+ S R+ Sbjct: 492 TGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQLLIEQEVS-SVSGATSVDI-SINKRE 549 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 TTV + GGTIVL GL+ +D+Q+ +PLL IP+LG LF+ + ++ + + + Sbjct: 550 IKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGDIPVLGHLFKTTSTSKRKRNLMVFLK 609 Query: 416 PFLVK 420 P +V+ Sbjct: 610 PTIVR 614 >gi|154246049|ref|YP_001417007.1| general secretion pathway protein D [Xanthobacter autotrophicus Py2] gi|154160134|gb|ABS67350.1| general secretion pathway protein D [Xanthobacter autotrophicus Py2] Length = 767 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 40/290 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ T+AEV + G Q +T G ++ + S+ D ++ VL F Sbjct: 486 QVAIEATVAEVTLNDTLAYGVQFYLTSKDLGLGRNNGSVLN-TLSSDITDQAINRVLPGF 544 Query: 255 SF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STG 303 + +L AL T ++ L+ P++ + Q A+ G + T S+ S+ Sbjct: 545 NLLVGRENQPRAILDALHTVTDVKVLSNPSVVVVDNQKATLQVGDEVPVSTGSATVLSSS 604 Query: 304 ATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------------- 347 T V T +Y G++LH P V G++ L I+ E+S V D Sbjct: 605 NTVVNTIEYKNTGIILHVVPRVNVNGQVRLEIEQEISN----VTQSDPTTSGTSSNSTGL 660 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ RK + + + SG T++LAGL+ + +++G+P+L +IP +G F ++ + Sbjct: 661 TPTVSQRKVKSVIAVASGQTVLLAGLISERHNGVRQGVPILDQIPGVGDAFAHTNGTVKR 720 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 TE+ I ++P +RD D ++V ++ +A V + G +A Sbjct: 721 TELII-----FIRPQIIRDNV---DAHTVAEELRAKLRGTVTTLPGGPQA 762 >gi|119472772|ref|ZP_01614709.1| General secretion pathway protein D [Alteromonadales bacterium TW-7] gi|119444731|gb|EAW26036.1| General secretion pathway protein D [Alteromonadales bacterium TW-7] Length = 687 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 26/214 (12%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A+ T LA P++T + + AS G Q + S TG +V Sbjct: 453 WGAIIQAVATDTNSNILATPSITTMDNEEASILVG-QEVPIITGSQTGTNNSNPFQTVER 511 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + G+ L TP + + L I+ EVS V G A D+ S R TTV GG +V Sbjct: 512 QEVGIKLIVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRAIKTTVIADDGGMVV 569 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLS 428 L GL+ +D+Q+ +PLL IP+LG LFR++ R + + + P +++ V+M LS Sbjct: 570 LGGLIDEDVQESVSKVPLLGDIPVLGHLFRSTNTTRRKRNLIVFIRPTIIRDGVSMNKLS 629 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 FN+ N I G + + +G Sbjct: 630 ----------------FNKYNFIRGEQTKQQEDG 647 >gi|148252838|ref|YP_001237423.1| general secretion pathway protein D [Bradyrhizobium sp. BTAi1] gi|146405011|gb|ABQ33517.1| General secretion pathway protein D [Bradyrhizobium sp. BTAi1] Length = 751 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 13/186 (6%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATSVTTHDY--- 312 +L AL T+++ L+ P+L I+ Q+A+ G T S+ S+ T V T DY Sbjct: 550 ILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGSATVLSSSNTVVNTIDYRNT 609 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G++L P + + G + L ++ E+S A P+ RK + + + +G T++LAG Sbjct: 610 GIILRVVPRIAANGNVRLEVEQEISNVAAQSAASLTPTVSQRKVKSAISVANGQTVLLAG 669 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L+ + + GIP +IPILG F + TE+ I ++P +RD S D Sbjct: 670 LISEQQNGNRNGIPGFDEIPILGDTFSHQDKKGTRTELII-----FIRPQIIRDGS--DA 722 Query: 433 HYSVED 438 H E+ Sbjct: 723 HQVAEE 728 >gi|226226499|ref|YP_002760605.1| putative general secretion pathway protein D precursor [Gemmatimonas aurantiaca T-27] gi|226089690|dbj|BAH38135.1| putative general secretion pathway protein D precursor [Gemmatimonas aurantiaca T-27] Length = 621 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 114/255 (44%), Gaps = 17/255 (6%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS--VKGV-L 251 QV +VTIAE I GF+ I ++ A FG + + G S ++ V L Sbjct: 355 QVLFEVTIAE----IALGRGFEFGIDWAAVNRGGDVQAQFGNPEIPDTGSTSALLRVVRL 410 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-- 309 D +L + + ++ LA P + A + + AS G + + +SS+ ++ Sbjct: 411 DGTGVRALLRTIASKSEVQVLATPEIMAANNREASILVGSKVPF--ISSTRLGNDISIDR 468 Query: 310 ----HDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELP 363 D G L PT+ G I +++ EVS P A P R+A T L Sbjct: 469 AVQYQDVGTKLAIIPTINDEGYISVQLLQEVSSLTPQTVAAALSAPVISTREASTRAVLR 528 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G T V+AGL+ + +G+P+L IP LGALF+ R+ TE+ I TP++V+ A Sbjct: 529 DGQTAVIAGLIGETRTTQDQGLPILKDIPWLGALFKRQSSTRQRTELAIFVTPYVVRSDA 588 Query: 424 MRDLSRPDDHYSVED 438 D R +ED Sbjct: 589 DADGIRERIRKRMED 603 >gi|330720479|gb|EGG98780.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC2047] Length = 332 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 104/239 (43%), Gaps = 19/239 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDR 253 QV ++ I R KQ+G + T G S GG + D V G Sbjct: 94 QVQVEARIVIARDTFDKQLGIRWGFTAQGGGSSDRTLTTGGGGLAGDVAVDLGVSGATSA 153 Query: 254 F---------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + L ALE +++P L GQ+A SG + Y+ SSS GA Sbjct: 154 LQLGFVHGNDTLDLTLSALESDGVSEVVSQPKLITADGQTARIESGVEIPYQEASSS-GA 212 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVE 361 TSV+ D + L TP + RI + ++ V E +G+ PS R+ T V Sbjct: 213 TSVSFKDAVLALEVTPQITPDDRIIMDLKVNKDSVGEIFLGI-----PSVDTREIQTQVL 267 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +G T+VL G+ + + + P L IP+LG LF+ ++TE+ I TP L+K Sbjct: 268 VENGETVVLGGVYERETIENISKTPFLGDIPVLGELFKRKTKEDDKTELLIFITPKLIK 326 >gi|301064256|ref|ZP_07204699.1| general secretion pathway protein D [delta proteobacterium NaphS2] gi|300441701|gb|EFK06023.1| general secretion pathway protein D [delta proteobacterium NaphS2] Length = 694 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 6/168 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGV 314 V++A ++ + L+ P L + A G Y+ +T A +S D GV Sbjct: 485 VVNAYQQDRDVHILSTPQLLTTDNEEAEIMVGRNVPYQVRQETTAAELDYSSYEYKDVGV 544 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L TP + + L+I EV+ V + A D P R A TTV + T+V+ G Sbjct: 545 TLKVTPQISLERSVRLKIYQEVTRLVDNNALTASDRPETYKRLAQTTVIVKDANTVVIGG 604 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L+ DD + +P L IP++G LF+ + RE+T +FI TP +++ Sbjct: 605 LIGDDTTHTEYKVPCLGDIPLVGWLFKGTSKKREKTNLFIFLTPRIIQ 652 >gi|124515780|gb|EAY57289.1| putative general secretion pathway protein D [Leptospirillum rubarum] gi|206602163|gb|EDZ38645.1| Putative general secretion pathway protein D [Leptospirillum sp. Group II '5-way CG'] Length = 555 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 11/191 (5%) Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 V GG F+ GV + S T+L+AL+ + ++TL+ P + A Q A T G + T Sbjct: 310 VLTGGSFNYGGV-NYPSIGTLLNALQTDSDVKTLSTPEILATDSQKAKITVGEDVPFITG 368 Query: 299 SSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMP 349 S T +V T + G+ L TP +L+ R+ L ++ ++ +IG A P Sbjct: 369 QSQTVGGNVMTMIQRQNVGITLDITPHILAHDRVRLNLKQTITALTNASQLIGTMAVG-P 427 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + R T + + SG T+V+ GL+ + K IP L +IP+LG LF +++ ++ + Sbjct: 428 TTTKRSTKTILTVRSGQTVVIGGLISSEKSLNKSTIPWLGEIPVLGYLFSSTQNEKKRDD 487 Query: 410 IFIAATPFLVK 420 + I TP++++ Sbjct: 488 LLIFLTPYIIR 498 >gi|296273826|ref|YP_003656457.1| type II and III secretion system protein [Arcobacter nitrofigilis DSM 7299] gi|296098000|gb|ADG93950.1| type II and III secretion system protein [Arcobacter nitrofigilis DSM 7299] Length = 468 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/275 (23%), Positives = 136/275 (49%), Gaps = 24/275 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 KK +N ++I+ Q+ +K I E+ K++G ++ + G + S + Sbjct: 162 KKFINKIDISNP-QIYIKAKIVEISETKTKEVGLEYGLNGFNKYSSTNLSTFSSSFNSLS 220 Query: 231 --AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 A +F +F + G F + + + ++ L++ AI ++EP++ I+ + +S Sbjct: 221 NTAINFS-EFSTFG--FDLNSLSKGLNLSATINFLKQNQAIDVISEPSILCINNKESSIY 277 Query: 289 SGGQHLYKT--VSSSTGAT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 G +KT ++++G T S + G+ L P + S +I L+I T + + + Sbjct: 278 VGETKSFKTGQTTNTSGTTESFKREEVGLRLKVKPRI-SDNKIILQINTVLEDVKESTTS 336 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 ++ + + ++ TT L + ++++ GL+K Q + G+P+L IPILG LF+N ++ Sbjct: 337 ENLDTSK-KEVITTAILNNAESVIIGGLIKTKKFQTESGLPVLKDIPILGTLFKNEKYIN 395 Query: 406 EETEIFIAATPFLVKPVAMRDL--SRPDDHYSVED 438 ++ + + TP++V + + S+ D S+ED Sbjct: 396 DKMNLVVIITPYIVPKDSTLSIIKSKVDYLQSLED 430 >gi|309780546|ref|ZP_07675293.1| general secretion pathway protein D [Ralstonia sp. 5_7_47FAA] gi|308920701|gb|EFP66351.1| general secretion pathway protein D [Ralstonia sp. 5_7_47FAA] Length = 805 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 99/215 (46%), Gaps = 16/215 (7%) Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291 GG F GV ++ S +L AL ++ L+ P L + GQ+ T+G Sbjct: 513 NGGQF---GVFNKASGLGALLSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 569 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPS 350 T +S T + D G+ L P + G + ++I E S V G NA P+ Sbjct: 570 YAQTGTSASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQESSAVVPGTQNATQGPT 629 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 VR +T V G +VL GLL+D+ Q ++ +P L IPILGALFR+ R +T + Sbjct: 630 TNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLGDIPILGALFRSENKTRVKTNL 689 Query: 411 FIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFF 444 + P +++ A LS D+ Y+ D + F Sbjct: 690 LVFLRPIILRTADATGALS--DNRYNYMRDTQQGF 722 >gi|241664633|ref|YP_002982993.1| general secretion pathway protein D [Ralstonia pickettii 12D] gi|240866660|gb|ACS64321.1| general secretion pathway protein D [Ralstonia pickettii 12D] Length = 803 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 99/215 (46%), Gaps = 16/215 (7%) Query: 241 EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGG 291 GG F GV ++ S +L AL ++ L+ P L + GQ+ T+G Sbjct: 511 NGGQF---GVFNKASGLGALLSALGSDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGS 567 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPS 350 T +S T + D G+ L P + G + ++I E S V G NA P+ Sbjct: 568 YAQTGTSASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQESSAVVPGTQNATQGPT 627 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 VR +T V G +VL GLL+D+ Q ++ +P L IPILGALFR+ R +T + Sbjct: 628 TNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLGDIPILGALFRSENKTRVKTNL 687 Query: 411 FIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFF 444 + P +++ A LS D+ Y+ D + F Sbjct: 688 LVFLRPIILRTADATGALS--DNRYNYMRDTQQGF 720 >gi|116751076|ref|YP_847763.1| general secretion pathway protein D [Syntrophobacter fumaroxidans MPOB] gi|116700140|gb|ABK19328.1| general secretion pathway protein D [Syntrophobacter fumaroxidans MPOB] Length = 793 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 127/284 (44%), Gaps = 32/284 (11%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----FQH 217 E++ + ++ YA KK + L+I V ++V IAEV + G F H Sbjct: 492 EVNNAIVVRANATDYAKI--KKTIEALDIL-PRAVLIEVIIAEVALTKDFEYGLKWYFSH 548 Query: 218 SITGSSSGPSK--------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + G+ G A + G +S G ++ V + VL L T + Sbjct: 549 AEVGAGVGQGSLNGLGGVSDIALNLAG--ISSAGGMALAWVSNAKDMAGVLSWLSSKTKV 606 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------THDY---GVVLHFTP 320 + L+ PTL A + A+ GG+ + S TG TS T T +Y G +L TP Sbjct: 607 KILSTPTLLATDNKEAAIQVGGRTPVPS-GSYTGGTSTTLDTVFSTIEYEETGTILTVTP 665 Query: 321 TVLSPGRIGLRIQTEV----SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 + + G + L ++ + + +GVN P++ R TT+ G T+V+ G++ + Sbjct: 666 HINAGGLVRLEVEQTIRRVGANATVGVN-NTAPTFTERNLKTTLLAQDGSTVVIGGIIDE 724 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G P+L +PI+G LF +RE TE+ IA TP +V+ Sbjct: 725 IDRDTTTGAPMLVDVPIIGPLFGQKGKSRERTELLIAITPRVVE 768 >gi|188993080|ref|YP_001905090.1| Type II secretory pathway component [Xanthomonas campestris pv. campestris str. B100] gi|167734840|emb|CAP53051.1| Type II secretory pathway component [Xanthomonas campestris pv. campestris] Length = 759 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 122/278 (43%), Gaps = 49/278 (17%) Query: 195 QVTLKVTIAEVRRDILKQIG----FQHSIT-----GSSSGPSKSFAA------DFGGKFV 239 QV ++ IAEV Q G F++++T S GP+ AA D G Sbjct: 479 QVHIEAQIAEVTLTGRLQYGVNWYFENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGSVT 538 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S G ++ G + ++ AL++ T +R L P++ + A+ G + + S Sbjct: 539 SNGVAWTFLGK----NAAAIISALDQVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTS 594 Query: 300 SSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------------- 339 +TG +SV D GV+L P V G + L I EVS P Sbjct: 595 INTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTT 654 Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 N D+ + RV+ T + +G TI+LAGL+ D GIP LSK+P++GAL Sbjct: 655 VNSAACNV-DINTRRVK---TEAAVQNGDTIMLAGLIDDSTTDGSNGIPFLSKLPVVGAL 710 Query: 398 FRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434 F N + E+ + TP +V+ P RDL+ D Y Sbjct: 711 FGRKTQNSDRREVIVLITPSIVRNPQDARDLT---DEY 745 >gi|21230145|ref|NP_636062.1| general secretion pathway protein D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769864|ref|YP_244626.1| general secretion pathway protein D [Xanthomonas campestris pv. campestris str. 8004] gi|129748|sp|P29041|GSPD_XANCP RecName: Full=General secretion pathway protein D; Flags: Precursor gi|155391|gb|AAA27615.1| XpsD precursor [Xanthomonas campestris] gi|21111677|gb|AAM39986.1| general secretion pathway protein D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575196|gb|AAY50606.1| general secretion pathway protein D [Xanthomonas campestris pv. campestris str. 8004] Length = 759 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 79/274 (28%), Positives = 119/274 (43%), Gaps = 41/274 (14%) Query: 195 QVTLKVTIAEVRRDILKQIG----FQHSIT-----GSSSGPSKSFAA------DFGGKFV 239 QV ++ IAEV Q G F++++T S GP+ AA D G Sbjct: 479 QVHIEAQIAEVTLTGRLQYGVNWYFENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGSVT 538 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S G ++ G + ++ AL++ T +R L P++ + A+ G + + S Sbjct: 539 SNGVAWTFLGK----NAAAIISALDQVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTS 594 Query: 300 SSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-- 351 +TG +SV D GV+L P V G + L I EVS P A + Sbjct: 595 INTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTT 654 Query: 352 ----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 R+ T + +G TI+LAGL+ D GIP LSK+P++GALF Sbjct: 655 VNSAACNVDINTRRVKTEAAVQNGDTIMLAGLIDDSTTDGSNGIPFLSKLPVVGALFGRK 714 Query: 402 RFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434 N + E+ + TP +V+ P RDL+ D Y Sbjct: 715 TQNSDRREVIVLITPSIVRNPQDARDLT---DEY 745 >gi|315125823|ref|YP_004067826.1| general secretion pathway protein D [Pseudoalteromonas sp. SM9913] gi|315014337|gb|ADT67675.1| general secretion pathway protein D [Pseudoalteromonas sp. SM9913] Length = 688 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 10/180 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A+ T LA P++T + + AS G Q + S TG+ +V Sbjct: 454 WGAIVQAVSTDTNSNILATPSITTMDNEEASILVG-QEVPIITGSQTGSNNENPFQTVER 512 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + G+ L TP + + L I+ EVS V G A D+ S R TTV GG +V Sbjct: 513 QEVGIKLKVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRAIKTTVMADDGGMVV 570 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLS 428 L GL+ +D+Q+ +PLL IPILG LF+++ + + + + P +++ ++M LS Sbjct: 571 LGGLIDEDVQESVSKVPLLGDIPILGHLFKSTNTTKRKRNLIVFIRPTIIRDGISMNKLS 630 >gi|307731499|ref|YP_003908723.1| general secretion pathway protein D [Burkholderia sp. CCGE1003] gi|307586034|gb|ADN59432.1| general secretion pathway protein D [Burkholderia sp. CCGE1003] Length = 782 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 33/221 (14%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVS 299 F V+G +L AL + L+ P L + + A G Y ++ Sbjct: 488 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNIPIQTGSYSNLT 541 Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYR 352 S T +++ T+D G+ LH P + G + L++ TE S V G P + Sbjct: 542 SGTASSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVNGTTNATTNPAGPQFT 601 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +TV +G IVL GL++D+ Q +PLL IP +G LFR+ + NR +T + + Sbjct: 602 KRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKNRNKTNLMV 661 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 FL +PV + D D A+A NR + I G Sbjct: 662 ----FL-RPVIIND----------RDTAQAVTSNRYDYIQG 687 >gi|291286428|ref|YP_003503244.1| general secretion pathway protein D [Denitrovibrio acetiphilus DSM 12809] gi|290883588|gb|ADD67288.1| general secretion pathway protein D [Denitrovibrio acetiphilus DSM 12809] Length = 616 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 19/208 (9%) Query: 215 FQHSITGSSSGPSKSFAADFG----GKFVS-EGGDFSVKGVLDRFSFETVLHALERATAI 269 FQ S+ S + ++ F G V+ EG F G+L F ++ A+ I Sbjct: 378 FQSSVLDGDSPNFGALSSGFNLGILGDIVTYEGVSFPTLGILANF--------VKTASGI 429 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS-STGATSVTTHDY---GVVLHFTPTVLSP 325 L+ P + + + A G + T + + V ++DY GV L+ P + S Sbjct: 430 NILSNPQILTLDNEEAEIFVGENRPFLTSTKYDSNNNPVQSYDYRDVGVKLNIVPQISSN 489 Query: 326 GRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 I L+I+ EV + V G A + P R T V+L G +V++GLLKDD + Sbjct: 490 DTITLKIEQEV-KKVSGATADVVAPVTLTRSTKTKVKLKDGAIMVISGLLKDDSETYNSS 548 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFI 412 +P LS IP++G LF+N + E+T + + Sbjct: 549 VPWLSSIPVIGWLFKNKNSSSEKTNMMV 576 >gi|226939985|ref|YP_002795058.1| type II and III secretion system protein [Laribacter hongkongensis HLHK9] gi|226714911|gb|ACO74049.1| type II and III secretion system protein [Laribacter hongkongensis HLHK9] Length = 616 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 74/282 (26%), Positives = 124/282 (43%), Gaps = 50/282 (17%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248 QV ++ TIAEV Q G S G G + FA++F G +S+ + Sbjct: 305 QVMIEATIAEVELTRDYQAGVDWSRIGD--GKNWQFASNFSGNGLSQNAGNPAQYFGTVG 362 Query: 249 ------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G+ S + LE R L+ P L A++ QSA Y Sbjct: 363 QVLQGSTTPAFTGLYRSGSLSAAIRLLEGFGRTRVLSSPKLMALNNQSAILKVVDNVPYF 422 Query: 297 TVS------------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------- 337 T+ ++T + + + G+V++ TP + GR+ L ++ ++ Sbjct: 423 TLKIKYEPGTTTNPPTTTYESELHSVPVGIVMNITPQIAPDGRVSLNVRPTITNITGFQR 482 Query: 338 EPVIGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 +P + + D +P +VR+ ++T+ L SG VL GL++D I + GIPL Sbjct: 483 DPAVQLVLADKGASDPGLGLVPQLQVRELESTLRLQSGEIGVLGGLIQDKIDKDSNGIPL 542 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLS 428 LS++P++GALF + + +TE+ + P LV +P DLS Sbjct: 543 LSQLPVVGALFGLRKESARKTELVVFLKPTLVSQPSLTTDLS 584 >gi|91200092|emb|CAJ73135.1| similar to general secretion pathway protein D [Candidatus Kuenenia stuttgartiensis] Length = 668 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 27/211 (12%) Query: 233 DFGGKFVSEGGDFSVKGVLD-----------------RFSFETVLHALERATAIRTLAEP 275 D+G +++ G + V GV D + SFE ++ L ++ + L+ P Sbjct: 433 DYGTEWLWSGSNLQVYGVGDIARAAGNAAVQFTNTFAKGSFEILIDILATSSNAKILSAP 492 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGL 330 + Q AS G + T S T++T D G++L TP + G I L Sbjct: 493 HILVRDEQPASIQVGEEVPILTSSGQQTGTTITFEQVQYRDTGIILTVTPHIAENGLITL 552 Query: 331 RIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVS + GV P++ R+ T++ + SG TI L G+++ ++ + IPL Sbjct: 553 EVNQEVSNAKLTDTGVEKS--PTFSTRQVQTSLVIKSGHTIGLGGIIEQKNEKEVKKIPL 610 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFL 418 L IP LG LF+ + + TE+ + TP++ Sbjct: 611 LGDIPYLGNLFKATSLIDKRTELIMLITPYI 641 >gi|308047936|ref|YP_003911502.1| general secretion pathway protein D [Ferrimonas balearica DSM 9799] gi|307630126|gb|ADN74428.1| general secretion pathway protein D [Ferrimonas balearica DSM 9799] Length = 723 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 12/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTH 310 F ++ A+ + LA P++T + Q ASF G + T S+S T+V Sbjct: 452 FGALIQAVAADSNSNVLATPSITTLDNQEASFIVGDEVPVITGSTSGSNNDNPFTTVERK 511 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + G+ L TP + + L I+ EVS V G A D+ ++ R TTV SG T+VL Sbjct: 512 EVGIKLKVTPQINEGNAVQLEIEQEVSN-VNGRTAVDV-TFGKRTLTTTVLADSGETVVL 569 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GLL +D+Q+ +PLL IP++G LF ++ + + + I +KP +RD Sbjct: 570 GGLLNEDVQESVSKVPLLGDIPVIGHLFSSTSSKKTKRNLMI-----FIKPTIIRD 620 >gi|332284397|ref|YP_004416308.1| general secretion pathway protein D [Pusillimonas sp. T7-7] gi|330428350|gb|AEC19684.1| general secretion pathway protein D [Pusillimonas sp. T7-7] Length = 792 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 111/256 (43%), Gaps = 32/256 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSF--AADFGGKFVSEGGDFS---- 246 QV ++ I EV D + G Q G+ SSG + SF A+F G ++ G + Sbjct: 477 QVLVESLIVEVSTDKAAEFGIQWMAGGNDLSSG-NTSFMGGANFNGSGINPSGITTIDAL 535 Query: 247 --------VKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSG--- 290 VKG +D E + ALE L+ P L + + AS G Sbjct: 536 AQGLSLGVVKGTVDILGTEILNLGVLARALESKGDANVLSTPNLMTLDNEEASIIVGRTV 595 Query: 291 ----GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--N 344 GQ+ +S +VT D G+ L P + G + + I EVS + G + Sbjct: 596 PFVTGQYTTSADGASNPFQTVTREDVGLTLRIRPQISEGGTVKMAIYQEVSS-IDGAASS 654 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 AG R R +T V + G IVL GLL+D I +P+L IP+LG LFR + + Sbjct: 655 AGAGLITRKRALETNVLVDDGQIIVLGGLLEDTISDSTSAVPVLGDIPVLGNLFRYDKRS 714 Query: 405 REETEIFIAATPFLVK 420 R +T + + P +V+ Sbjct: 715 RTKTNLMVFLRPHIVR 730 >gi|283955079|ref|ZP_06372582.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 414] gi|283793446|gb|EFC32212.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 414] Length = 470 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 19/198 (9%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+ +F+++++ L + L+ P L A++ Q A + G Y+ SS G + T Sbjct: 267 GLRANLNFDSIVNFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 326 Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352 T ++Y G++L+ P + G+I LRI +S+ P + P Sbjct: 327 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 386 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +K + V++ + T++L GL+ D K I LSKIPILG+LF+ + + TEI Sbjct: 387 QKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLDSKATEIVF 446 Query: 413 AATPFLVKPV---AMRDL 427 TP +V +++DL Sbjct: 447 IITPSIVDSTNAPSLKDL 464 >gi|221134989|ref|ZP_03561292.1| general secretion pathway protein D [Glaciecola sp. HTCC2999] Length = 693 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 11/194 (5%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + G+++ + V+ A+ T LA P LT + + A F G Q + +S Sbjct: 446 GANGMIAGIIEN-GWGAVVQAVSTDTNSNILATPHLTTMDNEEAFFIVG-QEVPIITGTS 503 Query: 302 TGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 TG+ +V + G+ L TP + + L I+ EVS V G + D+ S R+ Sbjct: 504 TGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQLLIEQEVSS-VSGATSVDI-SINKRE 561 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 TTV + GGTIVL GL+ +D+Q+ +PLL IP +G LF+ + ++ + + + Sbjct: 562 IKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGDIPFVGHLFKTTTSSKRKRNLMVFLR 621 Query: 416 PFLVKP-VAMRDLS 428 P +V+ V M ++S Sbjct: 622 PTIVRDGVTMNEIS 635 >gi|309389153|gb|ADO77033.1| type II and III secretion system protein [Halanaerobium praevalens DSM 2228] Length = 438 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 23/232 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + Q+ +K + E+ R +K++G PS+ +E GD Sbjct: 174 QKQIMIKARVEEISRTEIKELGI---------NPSQLTELKI---IKNEAGDLEEL---- 217 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTH 310 + ++ L +L LA P+L + + A G Q K V S +++ Sbjct: 218 KPNWPDTLRSLNERGLSNILANPSLMTLDRKKAKLIIGDQIPVKLERVESEKTVSTINYI 277 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIV 369 + G+VL F P +++ + L I+ V+ +G V A +P+ R A+TTV L + T+ Sbjct: 278 EAGIVLEFLPKIINEKEVLLEIKPSVNS--LGQVLADGLPAVNSRSAETTVILENDQTLA 335 Query: 370 LAGLLK-DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + GL+K D+++ +KE +P+L+ +P+LG LF N ETE+ I TP +++ Sbjct: 336 IGGLIKKDELKSIKE-VPILADLPLLGKLFSAEEKNDIETELIIFITPKIIE 386 >gi|209756638|gb|ACI76631.1| putative transport protein [Escherichia coli] gi|320645172|gb|EFX14188.1| outer membrane porin HofQ [Escherichia coli O157:H- str. 493-89] gi|320650483|gb|EFX18949.1| outer membrane porin HofQ [Escherichia coli O157:H- str. H 2687] Length = 412 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L A Q AS G + Y+ S +GATSV + + + TPTVL GRI L+ Sbjct: 260 IASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLK 319 Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + P V+ G++ + ++ +T VE+ SG T+ L G+ + ++ +PLL Sbjct: 320 LHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLG 379 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP G LFR+ E E+ + TP LV Sbjct: 380 DIPWFGQLFRHDGKEDERRELVVFITPRLV 409 >gi|186474451|ref|YP_001863422.1| general secretion pathway protein D [Burkholderia phymatum STM815] gi|184198410|gb|ACC76372.1| general secretion pathway protein D [Burkholderia phymatum STM815] Length = 717 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 32/225 (14%) Query: 249 GVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLYKT 297 G+L RF +L AL +++ L+ P L + + A G G + T Sbjct: 468 GLLHRFGNVFGLGGLLQALSQSSDANILSTPNLITLDNEEAKIVVGSNVPVVTGSYATPT 527 Query: 298 VSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352 +++T T+ T D G+VLH P + G I L+I +E S +P N G + + Sbjct: 528 ANAATSVTAFNTFDRQDVGIVLHVKPQITDGGIIKLQIYSEDSSVDPTSTNNPGGVTIIK 587 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +TV G IVL GL++D+ +PLL +P +G LFR+ +R +T + + Sbjct: 588 -RSVQSTVLSDDGEIIVLGGLMQDNYSNGNSKVPLLGDVPWIGQLFRSEEKSRTKTNLMV 646 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 ++PV + D D A+A NR + I G + A Sbjct: 647 -----FLRPVIINDW----------DTAQAVTSNRYDYIQGVQGA 676 >gi|307545360|ref|YP_003897839.1| general secretion pathway protein D [Halomonas elongata DSM 2581] gi|307217384|emb|CBV42654.1| general secretion pathway protein D [Halomonas elongata DSM 2581] Length = 749 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 20/251 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV ++ I EVR G Q + G++S PS + A+ G + G S+ G Sbjct: 482 QVQIETRILEVRLTGALNQGVQWYLGQLAGNASNPSVANASGSQGALGA--GGVSLGGSS 539 Query: 252 DRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSS 301 +SF + L AL+ + L+ P+L ++ Q A G Q T + Sbjct: 540 MFYSFVGDNLQVALRALQTRGLTQVLSAPSLVVLNNQQAQIQVGDNIPVNQTTVNTADAD 599 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADT 358 T +SV GV+L P + G + + IQ +VS+ G A + P R T Sbjct: 600 TTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADDNAAGSTASN-PRISTRAVST 658 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + SG T++L GL++ + + + +P LS IP LG LF + +R+ TE+ + TP + Sbjct: 659 QVAVQSGQTVLLGGLIQQNNAESETRVPGLSSIPGLGRLFGSEARDRDRTELIVLITPKV 718 Query: 419 V-KPVAMRDLS 428 V PV R+++ Sbjct: 719 VNNPVQAREIT 729 >gi|227329158|ref|ZP_03833182.1| putative outer membrane porin HofQ [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 424 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + + + T Sbjct: 258 LMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 317 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P +L GRI L ++ + P + GD + ++ T V + G TIVL G+ + Sbjct: 318 PDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQ 377 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL ++P+ G LFRN E+ I TP L+ Sbjct: 378 QKKNSDRQVPLLGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420 >gi|13475694|ref|NP_107261.1| general secretion proteinD [Mesorhizobium loti MAFF303099] gi|14026450|dbj|BAB53047.1| general secretion protein D [Mesorhizobium loti MAFF303099] Length = 708 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 15/183 (8%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGA------TSV 307 + + L+AL + T + ++ PT+ A++ Q A G Q + S TG SV Sbjct: 495 NIQVTLNALSKITDVNVISAPTIMALNNQKAILQVGDQVPILTQQSQDTGNGSAPIINSV 554 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSG 365 D GV+L TP + + GR+ L IQ EVS V ++ D+ P+ + RK T V + G Sbjct: 555 QMKDTGVILTVTPRINNAGRVMLDIQQEVSN-VTKTDSSDIDSPTIQQRKVQTRVLVNDG 613 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++ L GL++ + + +P+L IPILG F+ TE+ I ++P +R Sbjct: 614 ESLALGGLIQQNNSVDRSQVPILGDIPILGNAFKQKDDTIRRTELII-----FIRPHVVR 668 Query: 426 DLS 428 D++ Sbjct: 669 DIN 671 >gi|27381133|ref|NP_772662.1| general secretion pathway protein D [Bradyrhizobium japonicum USDA 110] gi|27354300|dbj|BAC51287.1| blr6022 [Bradyrhizobium japonicum USDA 110] Length = 793 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 6/172 (3%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHD 311 S VL AL T ++ L+ P+L + Q+A+ G Q + T +++ T V T D Sbjct: 585 SPRVVLDALHGITNVKVLSNPSLVVLDNQAATLQVGDQVPFSTGTATVLTANNTVVNTID 644 Query: 312 Y---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 Y G++L P + G + L I+ E+S G P+ R+ +++ + SG T+ Sbjct: 645 YKNTGIILRVLPRANANGNVVLDIEQEISSVAAGSANSLTPTISQRRVKSSIAVTSGQTV 704 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +LAGL+ + + ++G+P+L IP +G F + R TE+ + P ++K Sbjct: 705 LLAGLISETENRQRQGLPILDSIPGMGDAFSHQTTARARTELILFIRPTVIK 756 >gi|77359203|ref|YP_338778.1| general secretion pathway protein D [Pseudoalteromonas haloplanktis TAC125] gi|76874114|emb|CAI85335.1| General secretion pathway protein D [Pseudoalteromonas haloplanktis TAC125] Length = 688 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 10/180 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A+ + LA P++T + + AS G Q + S TG+ +V Sbjct: 454 WGAIVQAVSTDSNSNILATPSITTMDNEEASILVG-QEVPIITGSQTGSNNTNPFQTVER 512 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + G+ L TP + + L I+ EVS V G A D+ S R TTV GG +V Sbjct: 513 QEVGIKLKVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRSIKTTVMADDGGMVV 570 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLS 428 L GL+ +D+Q+ +PLL IPILG LF+++ R + + + P +++ ++M LS Sbjct: 571 LGGLIDEDVQESVSKVPLLGDIPILGHLFKSTNTTRRKRNLIVFIRPTIIRDGISMNKLS 630 >gi|89074487|ref|ZP_01160964.1| putative type II secretory pathway, component EpsD [Photobacterium sp. SKA34] gi|89049775|gb|EAR55325.1| putative type II secretory pathway, component EpsD [Photobacterium sp. SKA34] Length = 672 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 26/222 (11%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIR 270 G +S + SG AA GG +KG + + ++ A+++ + Sbjct: 408 GKPYSYETTESGDLAPMAAFLGG----------IKGAAAAITMGDWTALVTAIKQNRNVN 457 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLS 324 L+ P +T + Q A+ S GQ + T S TG+ T+V D G+ L TP + Sbjct: 458 VLSTPNVTVLDNQEANL-SVGQEVPVTTGSQTGSNNDNPFTTVERKDVGIQLKVTPQINE 516 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + ++I+ VS+ A D+ + R+ T+V + G I L GL+++ + ++ Sbjct: 517 GDSVQMKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQK 575 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +P+L IP+LGALFR++ E+T + + ++P +RD Sbjct: 576 VPILGDIPVLGALFRSTNNQTEKTNLMV-----FIRPTILRD 612 >gi|330722019|gb|EGG99947.1| General secretion pathway protein D [gamma proteobacterium IMCC2047] Length = 338 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 21/277 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---AADFGGKFVSEGGDFSVKGVL 251 QV ++ I EV +L +G Q + S+G +F A+ + G G Sbjct: 26 QVLVEAVIVEVNDSVLDDLGVQWQTSTPSNGEFSAFNAIPANISTPALPTLGSGLTLGYF 85 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLYKTVSSSTGA 304 S ++ ALE T L+ PT+ + + A G G ++ +S Sbjct: 86 KDNSLRALIRALESDTKANVLSTPTIVTLDNEEAEILVGSNVPFITGSETNESSPTSNPF 145 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 ++ D G+ L P + + L I QT S VN D+ + + R T V L Sbjct: 146 QTIQRQDIGITLKVKPRINENDSMTLAIEQTVESIATSAVNTADIVTNK-RNIKTNVLLE 204 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +VL GL+ D+ ++ +P+L IP+LG LFR++ E+ + + + P+ Sbjct: 205 DDQVLVLGGLISDESSNVESKVPVLGHIPVLGRLFRSTSTKVEKKNLMV-----FIHPMI 259 Query: 424 MRDLSRPD----DHYSVEDDAKAFFFNRVNKIYGPKE 456 + DL R + D Y+ + + + ++I+ PK+ Sbjct: 260 LSDLERSNKLTSDRYNSMRNKQQQYNGDRDRIFIPKQ 296 >gi|77164279|ref|YP_342804.1| general secretion pathway protein D [Nitrosococcus oceani ATCC 19707] gi|254435433|ref|ZP_05048940.1| general secretion pathway protein D [Nitrosococcus oceani AFC27] gi|76882593|gb|ABA57274.1| General secretion pathway protein D [Nitrosococcus oceani ATCC 19707] gi|207088544|gb|EDZ65816.1| general secretion pathway protein D [Nitrosococcus oceani AFC27] Length = 833 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 22/184 (11%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGV 314 VL L T ++ L+ P L + Q+A G Q +T S+ T + D GV Sbjct: 596 VLDTLSSQTKVKVLSSPQLLVLDNQTAEIRVGDQIPIQTGSTIGIGGNSTTRIQFRDTGV 655 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGD------------MPSYRVRKA 356 +L TP V + GR+ + + EV++ P +GD P++ R Sbjct: 656 LLTVTPRVNAGGRVTMELTQEVTDVGGTKLPTSAAPSGDGDDDNNNQTVGNNPTFLQRSF 715 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + V + SG TIVL GL++D+ + G+P L K+P++G LF + ++ TE+ + TP Sbjct: 716 RSVVTVQSGDTIVLGGLIRDNERFSDSGLPFLHKLPLIGPLFGATAKSKSRTELIVLMTP 775 Query: 417 FLVK 420 +V+ Sbjct: 776 RVVR 779 >gi|30248714|ref|NP_840784.1| general (type II) secretion pathway (GSP) D protein [Nitrosomonas europaea ATCC 19718] gi|30180309|emb|CAD84616.1| General (type II) secretion pathway (GSP) D protein [Nitrosomonas europaea ATCC 19718] Length = 697 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 89/170 (52%), Gaps = 8/170 (4%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATSVTT---HD 311 VL+AL+ T ++ L+ P ++ ++ Q AS G Q T +S +GA + T D Sbjct: 493 VLNALQSKTEVKILSAPKISVLNNQKASLQVGDQVPIVTQTSQGTVVSGAPVINTIQMRD 552 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVL 370 GV+L P V G + L + EVSE ++G D P+ + RK + + G T+ L Sbjct: 553 TGVILEVIPRVNDNGNVILDVTQEVSEVAQTTSSGIDSPTIQRRKIHSVIATRDGFTVAL 612 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GL++++ G+PL+ +P++G LF+++ + TE+ + P +++ Sbjct: 613 GGLIRENGSAGNSGVPLIKDVPVIGNLFKSNTSDIRRTELVVLLVPHVMR 662 >gi|70733953|ref|YP_257593.1| type IV pilus biogenesis protein PilQ [Pseudomonas fluorescens Pf-5] gi|68348252|gb|AAY95858.1| type IV pilus biogenesis protein PilQ [Pseudomonas fluorescens Pf-5] Length = 583 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 9/217 (4%) Query: 214 GFQHSITGSSS------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 G Q++ +GSSS G S S D G + G + + D + L A+E+ Sbjct: 366 GVQNAASGSSSIGAPGSGGSNSPFVDLGASAHTSG--IGIAYITDNVLLDLELTAMEKTG 423 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +++P + ++A G + Y+ SSS GATSV+ + + L TP + R Sbjct: 424 NGEIVSQPKVVTSDKETAKILKGTEIPYQEASSS-GATSVSFKEASLSLEVTPQITPDNR 482 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I + ++ EP D+P + + + V + G TIV+ G+ + ++ + +P Sbjct: 483 IIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGATIVIGGVFSNTQSKVVDKVPF 542 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 L +P LG LFR + +++E+ + TP ++ A+ Sbjct: 543 LGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAI 579 >gi|323527881|ref|YP_004230034.1| general secretion pathway protein D [Burkholderia sp. CCGE1001] gi|323384883|gb|ADX56974.1| general secretion pathway protein D [Burkholderia sp. CCGE1001] Length = 785 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 33/221 (14%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVS 299 F V+G +L AL + L+ P L + + A G Y ++ Sbjct: 489 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSNLT 542 Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPS---YR 352 S +++ T+D G+ LH P + G + L++ TE S V G NA P+ + Sbjct: 543 SGNASSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVNGTTNAATNPAGPQFT 602 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +TV +G IVL GL++D+ Q +PLL IP +G LFR+ + NR +T + + Sbjct: 603 KRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKNRNKTNLMV 662 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 ++PV + D D A+A NR + I G Sbjct: 663 -----FLRPVIISD----------RDTAQAVTSNRYDYIQG 688 >gi|260424842|ref|ZP_05733440.2| bacterial type II and III secretion system protein [Dialister invisus DSM 15470] gi|260403342|gb|EEW96889.1| bacterial type II and III secretion system protein [Dialister invisus DSM 15470] Length = 449 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 7/161 (4%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVTTHDYG 313 F L+AL R LA P + ++G+ A G + + + V + T+ D G Sbjct: 283 FRANLNALVSTGKARILARPNVVTMNGREAEILIGNKIPVIVEHVDNGVRTTTTEYRDAG 342 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLA 371 + L +TP + + G I + EVS P + +M +YR+ R+A+T V L SG + + Sbjct: 343 IKLTYTPRISADGEITANVNAEVSTPYL---VPEMRAYRIITRQANTLVRLRSGDMLTIG 399 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 GL+ + + +P+L IP+LG LF++ + EE+EI I Sbjct: 400 GLIDKEENKTFRKVPILGDIPLLGKLFQSKSRSVEESEIVI 440 >gi|212217864|ref|YP_002304651.1| type 4 pili secretin (outer membrane porin) [Coxiella burnetii CbuK_Q154] gi|212012126|gb|ACJ19506.1| type 4 pili secretin (outer membrane porin) [Coxiella burnetii CbuK_Q154] Length = 353 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 16/192 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + L ALE+ + L+ P L + Q+A SG Y+ + G TSVT + + Sbjct: 168 LDLTLSALEQEGRAQVLSCPELMTNNRQTAIIESGEAIPYQE-KTGQGNTSVTFNKATLR 226 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP VL RI L++ + + +P+ + ++ T V + + T+VL G+ + Sbjct: 227 LKVTPVVLPGNRILLQLNVN-QDKMSSFLVNGVPTIQTQQLTTKVMVNNQETVVLGGIYE 285 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 QQ + GIP L KIPILG LFR+ + + E ++ I TP ++ P Sbjct: 286 QSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISP-------------- 331 Query: 436 VEDDAKAFFFNR 447 E + + FNR Sbjct: 332 YEKKSHQYLFNR 343 >gi|262192447|ref|ZP_06050599.1| general secretion pathway protein D [Vibrio cholerae CT 5369-93] gi|262031711|gb|EEY50297.1| general secretion pathway protein D [Vibrio cholerae CT 5369-93] Length = 707 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 121/257 (47%), Gaps = 23/257 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKS 229 + QYA+ ++++ LL + QV L+ T+AEV+ + +G + +IT G +G S Sbjct: 439 QGQYADY--QRLIELLKFVDQRPRQVLLQATVAEVKVEDGFTLGTEFNITSGDITGGSNG 496 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 A+ G+ ++ GV + + AL+ A + L+ P + A+ + A + Sbjct: 497 LIAN--------AGNLNLNGVFGDVTAK-FTAALDSGKA-QVLSSPRVIAMDQEPARISI 546 Query: 290 GGQHLYKTVSSSTG---ATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G Q KT S G + + T+ Y G+ L TPT+ G + L I EVS GV Sbjct: 547 GEQIQVKTGEVSGGGDDSKATVTYQYVDVGITLDITPTINQNGLVELSISQEVSSQ--GV 604 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 GD R T + SG TI + GL+ D + +P+L IP++G LF+ Sbjct: 605 ITGDSIPINKRSLQTRMLADSGDTIYMGGLISKDNNNSENKVPILGDIPLIGNLFKYRVE 664 Query: 404 NREETEIFIAATPFLVK 420 + TE+ + TP+++ Sbjct: 665 KQNSTELVLLITPYVIN 681 >gi|153206247|ref|ZP_01945510.1| bacterial type II and III secretion system family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165919273|ref|ZP_02219359.1| bacterial type II and III secretion system family protein [Coxiella burnetii RSA 334] gi|120577377|gb|EAX34001.1| bacterial type II and III secretion system family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165916996|gb|EDR35600.1| bacterial type II and III secretion system family protein [Coxiella burnetii RSA 334] Length = 349 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 22/195 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + L ALE+ + L+ P L + Q+A SG Y+ + G TSVT + + Sbjct: 164 LDLTLSALEQEGRAQVLSCPELMTNNRQTAIIESGEAIPYQE-KTGQGNTSVTFNKATLR 222 Query: 316 LHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L TP VL RI L++ Q ++S ++ +P+ + ++ T V + + T+VL G Sbjct: 223 LKVTPVVLPGNRILLQLNVNQDKMSSFLVN----GVPTIQTQQLTTKVMVNNQETVVLGG 278 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 + + QQ + GIP L KIPILG LFR+ + + E ++ I TP ++ P Sbjct: 279 IYEQSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISP----------- 327 Query: 433 HYSVEDDAKAFFFNR 447 E + + FNR Sbjct: 328 ---YEKKSHQYLFNR 339 >gi|224372077|ref|YP_002606449.1| putative GspD [Nautilia profundicola AmH] gi|223589087|gb|ACM92823.1| putative GspD [Nautilia profundicola AmH] Length = 580 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 17/238 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPS-KSFAADFGG---KFVSEGGDFSVKG 249 QV +K I E+ QIG + + GS +G + +A+ GG F S+ Sbjct: 315 QVYVKARILEISNLKASQIGNKLGLYAGSGTGSGLYTLSANMGGPAIAFDVTSLGLSIPT 374 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + + + LE A + L+EP++ I+ ++ G KT+S TG T+ T+ Sbjct: 375 IRQGLALGATIDLLETFGAAKKLSEPSILCINNTPSTIYVG-----KTISVKTGQTTSTS 429 Query: 310 -------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 D G+ L P + S ++ L ++ V + + G +P+ R TT + Sbjct: 430 TSVSYSRQDIGLTLEIKPRIDSDNKVSLNVKAVVEDILPGSPDLTLPTTSKRDIKTTTIV 489 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +G +I++ GL++++ + +P IPI+GALFR+ N ++T + I TP++VK Sbjct: 490 SNGQSIIIGGLVRNNKDITIKKVPFFGDIPIIGALFRHKEVNEDKTTLVIVLTPYIVK 547 >gi|90406756|ref|ZP_01214949.1| putative type II secretory pathway, component EpsD [Psychromonas sp. CNPT3] gi|90312209|gb|EAS40301.1| putative type II secretory pathway, component EpsD [Psychromonas sp. CNPT3] Length = 658 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 91/186 (48%), Gaps = 19/186 (10%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD--- 311 ++ +L AL +T LA P++ + Q ASF G + V TG+TS +D Sbjct: 420 NWGVMLQALSSSTGSNILATPSIMTLDNQEASFLVGDE-----VPVLTGSTSSDDNDNPF 474 Query: 312 -------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 GV L+ TP + + L I+ EVS N D+ + R TTV + S Sbjct: 475 QTIERKEIGVKLNVTPQINEGDSVQLVIEQEVSSIKDSTNTVDVV-FSTRSVKTTVLVKS 533 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE--IFIAATPFLVKPV 422 G TIV+ GL+ + + + + IPLL IP LG LF+++R E+ IF+ AT + V Sbjct: 534 GQTIVIGGLIDEKVIESVDKIPLLGDIPWLGNLFKSTRNTTEKRNLMIFLRAT-IIRDDV 592 Query: 423 AMRDLS 428 M +LS Sbjct: 593 TMNELS 598 >gi|90581085|ref|ZP_01236885.1| putative type II secretory pathway, component EpsD [Vibrio angustum S14] gi|90437781|gb|EAS62972.1| putative type II secretory pathway, component EpsD [Vibrio angustum S14] Length = 674 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 28/220 (12%) Query: 228 KSFAADFGGKF----VSEGGDFS--------VKGVLDRFS---FETVLHALERATAIRTL 272 K + D G + +E GD + VKG + + ++ A++ + L Sbjct: 402 KRYDPDTGAELPPIVTTESGDLAPMAAFLGGVKGAAAAIALGDWTALVTAVQANRNVNVL 461 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPG 326 + P +T + Q A+ S GQ + T S TG+ T+V D G+ L TP + Sbjct: 462 STPNITVLDNQEANL-SVGQEVPVTTGSQTGSNNDNPFTTVERKDVGIQLKVTPQINEGD 520 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + ++I+ VS+ A D+ + R+ T+V + G I L GL+++ + ++ +P Sbjct: 521 SVQMKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQKVP 579 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +L IP+LGALFR++ E+T + + ++P +RD Sbjct: 580 ILGDIPVLGALFRSTNNQTEKTNLMV-----FIRPTILRD 614 >gi|222056148|ref|YP_002538510.1| type IV pilus secretin PilQ [Geobacter sp. FRC-32] gi|221565437|gb|ACM21409.1| type IV pilus secretin PilQ [Geobacter sp. FRC-32] Length = 911 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 110/242 (45%), Gaps = 22/242 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQ---HSITGSSS--GPSKSFAADFGGKF-VSEGGDFS 246 E QV ++ I E ++ +G Q H I GS+S G S+ FGG+ ++ S Sbjct: 676 EKQVMIEARIVEASTSFVRDLGVQWGIHYIDGSASVAGISR-LDTGFGGQVAIAPTSGTS 734 Query: 247 VKGVLDRFSF---------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G SF + L A A I+ ++ P + ++ + A + G Y+T Sbjct: 735 GPGAAVGMSFGKLASNIQLDMRLSAAVTADQIKIMSTPRVVTLNNKPAKISQGASIPYQT 794 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 S+ T + + L TP + S G IG++I+ + G P ++A Sbjct: 795 TSAEGTKTEFV--EAALTLEVTPHITSDGSIGMKIKASNN----SAGTGSPPPINKKEAT 848 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + + +G T V+ G+ D + +G+P L IP+LG LF+++ N+ + E+ I TP Sbjct: 849 TELLIKNGETTVIGGIYVDSDTESDKGVPFLQDIPLLGWLFKSNTKNKSKNELLIFITPK 908 Query: 418 LV 419 +V Sbjct: 909 IV 910 >gi|77918000|ref|YP_355815.1| type II and III secretion system protein [Pelobacter carbinolicus DSM 2380] gi|77544083|gb|ABA87645.1| type II and III secretion system protein [Pelobacter carbinolicus DSM 2380] Length = 537 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 112/240 (46%), Gaps = 27/240 (11%) Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 V++A+ R DI G I GS S A G F GG FS L+ +F+ Sbjct: 270 VSMAQTRGDIFADNGL-ADIVGSDGAAVTSGLA--SGAF---GGVFS--AALNFKNFQAF 321 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----------SVTT 309 + LE ++ L+ P + ++ Q A G + T SS T ++T Sbjct: 322 IELLETQGDVQVLSSPRIATVNNQKAVIKVGSDEFFVTDVSSDTVTGTTTTTSPDITLTP 381 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVN-AGDMPSY-----RVRKADTTV 360 G+ L TP + G++ L I +EVS+ + AG+ + VR++D+ V Sbjct: 382 FFSGIALDVTPQIDPKGKVTLHIHPTVSEVSDQTKDITVAGETQTLPLAFSTVRESDSIV 441 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 SG +V+ GL+KD +Q +PLL ++P +GALFR+++ ++E+ I P +V+ Sbjct: 442 AAESGQVVVIGGLMKDQLQNRDASVPLLGRLPGVGALFRHTQSVSRKSELVILLRPMVVE 501 >gi|88858853|ref|ZP_01133494.1| general (Type II) secretion pathway (GSP) D protein [Pseudoalteromonas tunicata D2] gi|88819079|gb|EAR28893.1| general (Type II) secretion pathway (GSP) D protein [Pseudoalteromonas tunicata D2] Length = 685 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 124/275 (45%), Gaps = 38/275 (13%) Query: 195 QVTLKVTIAEVR-RDILKQ---IGFQHSITGSSSGPSKSFAAD-FGG-KFVSEGGDFSVK 248 Q+ L+V IAEV + KQ F++ G+S+ K+F D FGG ++ +G + Sbjct: 436 QIMLEVIIAEVSLTNEFKQGVEFAFKNGNYGTST--EKAFMGDGFGGLSYLLQG----TQ 489 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG------GQHLYKTVSSST 302 G L +++ L+ + + L+ P+L G +A+ G G+ ++ Sbjct: 490 GKL-------IVNLLQTNSLVNILSRPSLVVRDGVNATINVGTDIPIVGETASDPINGDR 542 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVE 361 T + GV L TPTV + G + + I+ ++S V G PS R +T V Sbjct: 543 QTTKIEYRKTGVELAVTPTVNAQGIVLMEIKQKISNQVESGSTVSGNPSVFERTINTEVV 602 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 SG TI+L GL+ ++ +P S IPILG LFR + ++TE+ I TP ++ Sbjct: 603 AESGQTIILGGLISENKSTKASRVPFFSGIPILGNLFRADTESGDKTELVILVTPRVI-- 660 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 + S DD K F N + P++ Sbjct: 661 ----------ESSSEWDDVKKLFDNAFENLKLPQK 685 >gi|319428303|gb|ADV56377.1| type IV pilus secretin PilQ [Shewanella putrefaciens 200] Length = 683 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 24/248 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSF--AADFGGKFVSEGGD------ 244 QV ++ + V+ ++ + +G + IT + G S S A D V GD Sbjct: 433 QVLIESRMVTVKDNVSEDLGIRWGITDQQGNKGSSGSLEGAQDIANGIVPSIGDRLNVNL 492 Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F V + D + L ALE+ +A P +T S Q A++ G Sbjct: 493 PAQVDSAASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGIE 551 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ-TEVSE-PVIGVNAGDMPSY 351 + S+S+GATSVT + L TP + R+ L ++ T+ SE + + G + Sbjct: 552 IPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSEGKTVPTSTGPAVAI 611 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ T V + +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ Sbjct: 612 DTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTTDKNERQELL 671 Query: 412 IAATPFLV 419 I TP +V Sbjct: 672 IFVTPKIV 679 >gi|307545809|ref|YP_003898288.1| general secretion pathway protein D [Halomonas elongata DSM 2581] gi|307217833|emb|CBV43103.1| general secretion pathway protein D [Halomonas elongata DSM 2581] Length = 700 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 9/174 (5%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G S GV SF +L+AL T L+ P+LT + AS G + + T S++ Sbjct: 448 GRLSSGGV----SFAMLLNALRSDTQTNLLSTPSLTTLDNAEASILVGQEVPFVTGSTTV 503 Query: 303 GAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 T ++ D GV L+ PT+ + I L I EVS GV A D+ + + R+ +T Sbjct: 504 DNTNPFQTIQREDVGVKLNIRPTIGADNSIRLEIVQEVSSIDEGVKASDVVTNK-REIET 562 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 TV GG IVL GL+ D+ ++ +PLL IP +G LFR R +++ + + Sbjct: 563 TVLTQDGGIIVLGGLISDENANAEQKVPLLGDIPGVGRLFRYDRDTQDKRNLMV 616 >gi|253690245|ref|YP_003019435.1| type IV pilus secretin PilQ [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756823|gb|ACT14899.1| type IV pilus secretin PilQ [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 424 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + + + T Sbjct: 258 LMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 317 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P +L GRI L ++ + P + GD + ++ T V + G TIVL G+ + Sbjct: 318 PDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQ 377 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P+L ++P+ G LFRN E+ I TP L+ Sbjct: 378 QKKSSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420 >gi|325924171|ref|ZP_08185732.1| General secretion pathway protein D [Xanthomonas gardneri ATCC 19865] gi|325545346|gb|EGD16639.1| General secretion pathway protein D [Xanthomonas gardneri ATCC 19865] Length = 758 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 30/199 (15%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDY 312 ++ AL+R T +R L P++ + A+ G + + S +TG +SV D Sbjct: 554 IISALDRVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDT 613 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP----------------VIGVNAGDMPSYRVRKA 356 GV+L P V G + L I EVS P N D+ + RV+ Sbjct: 614 GVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTTVNSAACNV-DINTRRVK-- 670 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + +G TI+LAGL+ D +G+P LSK+P++G+LF NR E+ + TP Sbjct: 671 -TEAAVQNGDTIMLAGLIDDTTSDGSDGLPFLSKLPVVGSLFGRKTQNRNRREVIVLITP 729 Query: 417 FLVK-PVAMRDLSRPDDHY 434 +V+ P RDL+ D Y Sbjct: 730 SIVRNPQDARDLT---DEY 745 >gi|328952531|ref|YP_004369865.1| general secretion pathway protein D [Desulfobacca acetoxidans DSM 11109] gi|328452855|gb|AEB08684.1| general secretion pathway protein D [Desulfobacca acetoxidans DSM 11109] Length = 794 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 22/204 (10%) Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S FAA G FV+ +KG+++ S E + LA P + A + Q A Sbjct: 559 SAQFAAASGLTFVALDTANKLKGLINLLSSEG---------KVNILASPHIMAANNQEAR 609 Query: 287 FTSGGQ------HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 G + VS +T +V + G++L P + + G + L I EVS Sbjct: 610 IMIGEEVPILSSQSIPLVSQTTSFQTNTVQYRNTGIILTVKPQINAKGLVTLEIAQEVSN 669 Query: 339 PV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 GV + P++ VR A T + T+VL GL+++D+ + + GIP L +IP+LG Sbjct: 670 ATATTTGVTSS--PTFTVRHAKTQLITGDNQTVVLGGLIREDLTETQAGIPGLRRIPLLG 727 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF ++ +R++TE+ + TP +V Sbjct: 728 PLFGSTGVSRQKTELVVLITPHIV 751 >gi|120600633|ref|YP_965207.1| type IV pilus secretin PilQ [Shewanella sp. W3-18-1] gi|146294790|ref|YP_001185214.1| type IV pilus secretin PilQ [Shewanella putrefaciens CN-32] gi|120560726|gb|ABM26653.1| type IV pilus secretin PilQ [Shewanella sp. W3-18-1] gi|145566480|gb|ABP77415.1| type IV pilus secretin PilQ [Shewanella putrefaciens CN-32] Length = 683 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 24/248 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSF--AADFGGKFVSEGGD------ 244 QV ++ + V+ ++ + +G + IT + G S S A D V GD Sbjct: 433 QVLIESRMVTVKDNVSEDLGIRWGITDQQGNKGSSGSLEGAQDIANGIVPSIGDRLNVNL 492 Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F V + D + L ALE+ +A P +T S Q A++ G Sbjct: 493 PAQVDSAASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGIE 551 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ-TEVSE-PVIGVNAGDMPSY 351 + S+S+GATSVT + L TP + R+ L ++ T+ SE + + G + Sbjct: 552 IPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSEGKTVPTSTGPAVAI 611 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ T V + +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ Sbjct: 612 DTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTTDKNERQELL 671 Query: 412 IAATPFLV 419 I TP +V Sbjct: 672 IFVTPKIV 679 >gi|218961675|ref|YP_001741450.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167730332|emb|CAO81244.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 472 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 32/257 (12%) Query: 193 EDQVTLKVTIAEVRRDILKQIG-----FQHSITGSSSGPSKSFAADFGGKFVSEGG---- 243 + Q+ ++V + EV + KQIG H T + P + + G Sbjct: 190 QQQIEIRVRLIEVHLNEAKQIGVDWSKLNHLTTILAEDPVNQYGTGLPYNYSDATGYLPH 249 Query: 244 ----DFSV----------KGVLD--RFS-----FETVLHALERATAIRTLAEPTLTAISG 282 DF V G D FS F+ + L A + L + +TA++G Sbjct: 250 GDPTDFGVIPDEQYFQRINGFHDIGHFSRQLTAFDVTIDWLLENNAAQLLTDTRVTALNG 309 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 + A+ G+ + V+ V + G++L+ TP V G I + I EVS V Sbjct: 310 ELATM-HIGEVVPFVVTDKENQLQVERSETGIILNVTPKVNKDGNITMNINPEVSS-VTE 367 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + G +P +VR+ + V +P+ I++ GLL +I Q IPLL +P++G +F++ Sbjct: 368 LVGGYIPRTKVRRVSSAVTVPNEHKIIVGGLLNSNITQKINKIPLLGDLPLIGKIFQHRY 427 Query: 403 FNREETEIFIAATPFLV 419 E T++ I TP LV Sbjct: 428 ELVENTDLIIEITPRLV 444 >gi|161830646|ref|YP_001597710.1| type II and III secretion system family protein [Coxiella burnetii RSA 331] gi|161762513|gb|ABX78155.1| bacterial type II and III secretion system family protein [Coxiella burnetii RSA 331] Length = 349 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 2/170 (1%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + L ALE+ + L+ P L + Q+A SG Y+ + G TSVT + Sbjct: 164 LDLTLSALEQEGRAQVLSCPELMTNNRQTAIIESGEAIPYQE-KTGQGNTSVTFKKATLR 222 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP VL RI L++ + + +P+ + ++ T V + + T+VL G+ + Sbjct: 223 LKVTPVVLPGNRILLQLNVN-QDKMSSFLVNGVPTIQTQQLTTKVMVNNQETVVLGGIYE 281 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 QQ + GIP L KIPILG LFR+ + + E ++ I TP ++ P R Sbjct: 282 QSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISPYEKR 331 >gi|326796946|ref|YP_004314766.1| type II and III secretion system protein [Marinomonas mediterranea MMB-1] gi|326547710|gb|ADZ92930.1| type II and III secretion system protein [Marinomonas mediterranea MMB-1] Length = 398 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 5/226 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ ++ IA+V R K +G T G ++ + +V+ Sbjct: 174 QIEIQAHIAQVHRSAQKTLGVNWQ-TVIEDGTRQALTGMVNLNAIGATSSLAVETTRGSS 232 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +L ALE +++P + GQSA SG + Y+ T+V G+ Sbjct: 233 RLSLLLDALETDGFANVISKPKIVTAEGQSARIESGTEIPYQV--QHDDVTTVEFRQAGL 290 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L TP V G LR+ + + +G +PS + +T VE+ G T+VL G+ Sbjct: 291 MLEVTPIVKEQGV--LRLDLNIHQDSVGEMVNGVPSLETNRLNTQVEVKDGETLVLGGIF 348 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + + +P+ +P+LGALFR+ E+ E+ + TP L++ Sbjct: 349 RQEKFENISKVPVFGDLPVLGALFRHRSDKTEKVELLVFITPKLLQ 394 >gi|258592161|emb|CBE68468.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 764 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 4/179 (2%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ + +RF L E IRTL+ P + + A G Q Y T+ +S G Sbjct: 583 MTIGSLANRFLVGAQLSVAENQGKIRTLSSPRVATQDNEEAEIKQGTQVPYTTIDAS-GR 641 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVEL 362 T V D + L P + GR+ ++++ E S P VN G + RKA T + + Sbjct: 642 TVVQFQDAFIKLKVKPHITPDGRVAMKVEAERSFPGQQVNFSGGFVFPINTRKATTNIMV 701 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE-TEIFIAATPFLVK 420 +G T+V+ GLL+ + + +P+L IPILG LF+ +E E+ I TP +++ Sbjct: 702 QNGSTVVIGGLLQSSETIISDQVPVLGDIPILGWLFKRRAIGPDERVELLIFLTPSVLQ 760 >gi|227112152|ref|ZP_03825808.1| putative outer membrane porin HofQ [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 420 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + + + T Sbjct: 254 LMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 313 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P +L GRI L ++ + P + GD + ++ T V + G TIVL G+ + Sbjct: 314 PDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQ 373 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P+L ++P+ G LFRN E+ I TP L+ Sbjct: 374 QKKNSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 416 >gi|157363362|ref|YP_001470129.1| type II and III secretion system protein [Thermotoga lettingae TMO] gi|157313966|gb|ABV33065.1| type II and III secretion system protein [Thermotoga lettingae TMO] Length = 1179 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 4/144 (2%) Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A P + SG+ A G + Y+T+ + G V D G+ L TP V + G I L I Sbjct: 1033 ASPRIVTSSGKEARILIGDRVPYQTIDAD-GNVIVNFLDTGIELRITPYVRTDGTIELNI 1091 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 T+VS+P N D+P R+ +T V L +G T+V+ GL+++ ++ +P L +P Sbjct: 1092 FTKVSKPTYYPNI-DIPGESTRETETDVILKNGDTLVIGGLMRETKEETSAKMPFLGDLP 1150 Query: 393 ILGALFRN--SRFNREETEIFIAA 414 +G LFR+ + ++ E IFI A Sbjct: 1151 FIGQLFRSKTEKADKRELLIFITA 1174 >gi|148263871|ref|YP_001230577.1| type IV pilus secretin PilQ [Geobacter uraniireducens Rf4] gi|146397371|gb|ABQ26004.1| type IV pilus secretin PilQ [Geobacter uraniireducens Rf4] Length = 944 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 106/242 (43%), Gaps = 22/242 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQ---HSITGSSS--GPSKSFAADFGGKFV-------- 239 E QV ++ I E + ++ +G Q H + GS+S G S+ F FGG Sbjct: 709 EKQVMIEARIVEAQTSFVRDLGVQWGLHYVDGSASVAGISR-FDTGFGGVVTPPPTSGTS 767 Query: 240 --SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 S + + L A A I+ ++ P + ++ + A + G Y+T Sbjct: 768 GPGAAAGMSFGKLASNIQIDMRLSAAVTAEQIKIISSPRVVTLNNKPAKISQGASIPYQT 827 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 S+ T + + L TP + S G IG++I+ + G P ++A Sbjct: 828 TSAEGTKTEFV--EAALTLEVTPHITSDGSIGMKIKASNN----SAGTGSPPPINKKEAT 881 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + + +G T V+ G+ D +G+P L IP+LG LF+++ N+ + E+ I TP Sbjct: 882 TELLVKNGETTVIGGIYVDSETDNDKGVPFLQDIPLLGWLFKSNTKNKSKNELLIFITPK 941 Query: 418 LV 419 ++ Sbjct: 942 II 943 >gi|269959332|ref|ZP_06173715.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835769|gb|EEZ89845.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 715 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 111/245 (45%), Gaps = 28/245 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSK-SFAAD-FGGKFVS--EGGDFSVKG 249 QV L++TIAEV + G + + + G+ S +K +F D GG F+ G DF Sbjct: 471 QVILEMTIAEVTMTDEFKFGVEWAFSNGNFSASTKDAFGLDKVGGGFIKWMSGDDF---- 526 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG------GQHLYKTVSSSTG 303 L A E + +++P+L G A+ G GQ T S+ G Sbjct: 527 --------INLQAFESNNNVNIMSKPSLLVRDGVEANINVGTDIPVVGQ---TTTDSNNG 575 Query: 304 AT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVE 361 T SV GV + TPT+ + G + + I E S V G + PS R T V Sbjct: 576 VTRSVEYRKTGVKVAVTPTINAQGIVSMVISQENSNQVDGGTSVEGNPSIFDRSITTEVV 635 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 SG T++L GL+ +++ +P L +P++G LF N+ +TE+ I TP +V+ Sbjct: 636 AESGQTVILGGLISENVTNNGSAVPFLGSLPVVGGLFGTKTDNKTKTELVIMVTPRIVES 695 Query: 422 VAMRD 426 + D Sbjct: 696 SSQWD 700 >gi|317051459|ref|YP_004112575.1| general secretion pathway protein D [Desulfurispirillum indicum S5] gi|316946543|gb|ADU66019.1| general secretion pathway protein D [Desulfurispirillum indicum S5] Length = 638 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 108/251 (43%), Gaps = 28/251 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGP--SKSFA-------------ADFGGK 237 QV ++ I EV D L Q+G Q + G + GP SF+ A Sbjct: 347 QVLIEAVIVEVVGDSLNQLGVQLAARSAGDTLGPIGGTSFSNAGTSLSNILTSIATQTPP 406 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--- 294 +S+G V +L AL T L+ P++ + Q AS G Q++ Sbjct: 407 TISDGMSLGVATTSGSVEMGALLTALASVTNANLLSTPSILTLDNQEASILVG-QNIPVR 465 Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 Y S + T++ D G+VL TP++ + R+Q E+ + D Sbjct: 466 TGTYSHDSGTNPFTTIQRQDVGIVLKTTPSIYEGNSV--RMQVELEASSVLTEGTDGIIT 523 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETE 409 R+ TT+ + TIVL GL+KDD+Q++ +PLL IP+LG LF R R + Sbjct: 524 NKREIITTILADNNETIVLGGLIKDDVQEVVSKVPLLGDIPLLGRLFQARRQRVEKRNLL 583 Query: 410 IFIAATPFLVK 420 +F+ T L + Sbjct: 584 VFLRPTILLTQ 594 >gi|126665040|ref|ZP_01736023.1| Type II secretory pathway, component PulD [Marinobacter sp. ELB17] gi|126630410|gb|EBA01025.1| Type II secretory pathway, component PulD [Marinobacter sp. ELB17] Length = 640 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 38/258 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----------------SKSFAADFG--- 235 QV ++ I E+ ++ +Q+G Q + SSG ++ +A G Sbjct: 342 QVMIEAAIVEISENMGEQLGVQLAAGDESSGGFPVLGTNLASGGMLGLNQVISAVLGDGT 401 Query: 236 -----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G + GD + GV ++ ++ AL ++A L+ P++ + Q + G Sbjct: 402 VPALAGGLTAGAGDRNRNGV----TWGLLIQALSTSSAANLLSTPSIITLDNQESEIIVG 457 Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVI 341 ++T ++ T++ D G+ L TPT+ + G + L ++ TE P Sbjct: 458 QNVPFRTGQAAVSGEGLTNPFTTIERRDVGLTLKVTPTISADGLVRLVVEQTTENVVPTT 517 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 A D+ + + R+ TTV G TIVL GL+KDD + K +PLL IP LG LF + Sbjct: 518 VAGASDLITNK-REIKTTVLADDGETIVLGGLMKDDYEVQKSKVPLLGDIPYLGRLFSSE 576 Query: 402 RFNREETEIFIAATPFLV 419 +R + + + P ++ Sbjct: 577 SESRVKRNLLVFLRPTIM 594 >gi|170721354|ref|YP_001749042.1| general secretion pathway protein D [Pseudomonas putida W619] gi|169759357|gb|ACA72673.1| general secretion pathway protein D [Pseudomonas putida W619] Length = 745 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 17/241 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV ++ I EV+ +G Q + G+SS S + A + G + G ++ Sbjct: 480 QVQIETRILEVKLTGDLDLGVQWYLGRLAGNSS--STTVANESGSQGALGAGGVALGSAS 537 Query: 252 DRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSS 301 +SF + L ALE + L+ P+L ++ Q A G Q T S Sbjct: 538 MFYSFVSSNLQVALRALETRGLTQVLSAPSLVVLNNQQAQIQVGDNIPISQTTVNTSDSD 597 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTT 359 T +SV GV+L P + G + + IQ +VS+ P+ R+ R T Sbjct: 598 TTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADDSAVTTTQPNPRISSRAVSTQ 657 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + SG T++L GL+K D Q +P LS IP LG LF ++ +R+ TE+ + TP +V Sbjct: 658 VAVQSGQTVLLGGLIKQDNGQSDTRVPGLSSIPGLGWLFGSTSKSRDRTELIVLITPRVV 717 Query: 420 K 420 Sbjct: 718 N 718 >gi|291279696|ref|YP_003496531.1| general secretion pathway protein D [Deferribacter desulfuricans SSM1] gi|290754398|dbj|BAI80775.1| general secretion pathway protein D [Deferribacter desulfuricans SSM1] Length = 621 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 17/202 (8%) Query: 225 GPSKSFAADFGGKFVSE--GGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAIS 281 G S +FAA GG F + G + +GV +F + +++ ++ +AI ++ P + + Sbjct: 385 GNSPNFAALPGG-FTAAILGNVITYEGV--KFPTLSALVNFVKTDSAINIISNPQILTLD 441 Query: 282 GQSASFTSGGQHLYKTVSS-STGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVS 337 + A G + T + V ++DY G+ L TP + + L+I+ EV Sbjct: 442 NEEAEVFVGENRPFLTSTKFDANNNPVQSYDYRDVGIRLKITPHISDNKTLTLKIEQEVK 501 Query: 338 EPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + + NAG+ P RK T VEL G T+V++GL+ DD +P LSKIPIL Sbjct: 502 KVI--ANAGNDLTAPITLTRKTKTMVELIDGYTMVISGLIGDDTSVSNSEVPFLSKIPIL 559 Query: 395 GALFRNSRFNREETE--IFIAA 414 G LF++ +R +T +FI A Sbjct: 560 GWLFKSRNRSRSKTNMMVFITA 581 >gi|223935099|ref|ZP_03627017.1| type II and III secretion system protein [bacterium Ellin514] gi|223895983|gb|EEF62426.1| type II and III secretion system protein [bacterium Ellin514] Length = 612 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 16/175 (9%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSS---STGATSVTTHDYGV 314 VL L + L+ P + ++A+ + + Q ++KT + S G + VT + G Sbjct: 387 VLSFLNTDNDAQVLSTPRAVTLDNETATLSVTRAQPIFKTTAGTQGSPGGSEVTYTNVGT 446 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSG 365 +L TP + + I LR+ EVS V G +N D+ + VR DT V +PSG Sbjct: 447 ILKVTPRISANKMISLRVIPEVSS-VAGTDRKIVSGQINEADI--FDVRHIDTQVLIPSG 503 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ GL+ DD + +PLL IP LGA FR+ + + + I TP +V+ Sbjct: 504 NTLVMGGLVSDDRTKSYIKVPLLGDIPYLGAAFRHESKTQNKKNLIIFVTPTIVE 558 >gi|229589906|ref|YP_002872025.1| putative type II secretion pathway protein D [Pseudomonas fluorescens SBW25] gi|229361772|emb|CAY48654.1| putative type II secretion pathway protein D precursor [Pseudomonas fluorescens SBW25] Length = 770 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 111/255 (43%), Gaps = 31/255 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI----------------TGSSSGPSKSFAADFGGKF 238 QV ++ I EV D + G Q +G +S P+ + D K Sbjct: 452 QVVIESLIVEVGEDDATEFGVQWQAGNLAGKGGFGGVNLGGSGVNSTPTSKTSIDVLPKG 511 Query: 239 VSEG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 ++ G G + G+ + + AL+ L+ P L + ++AS G + Sbjct: 512 LNVGLVNGTVDIPGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPF 571 Query: 296 KTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNA 345 T S TG +V + G+ L+ P + G + L I EVS + V+A Sbjct: 572 VTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSTVDTRASVDA 631 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 G + + R DT++ L G +VL GLL+D Q + +P LS IP LGALFRN + + Sbjct: 632 GTVTNKRA--IDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSDIPGLGALFRNEKRSV 689 Query: 406 EETEIFIAATPFLVK 420 +T + + P++++ Sbjct: 690 NKTNLMVFLRPYIIR 704 >gi|186477814|ref|YP_001859284.1| general secretion pathway protein D [Burkholderia phymatum STM815] gi|184194273|gb|ACC72238.1| general secretion pathway protein D [Burkholderia phymatum STM815] Length = 787 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 91/209 (43%), Gaps = 31/209 (14%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSSTGATSVTTHD-- 311 +L AL + L+ P L + Q A G Y ++SST T+ T D Sbjct: 501 LLQALSQTADANVLSTPNLITLDNQEAKIVVGTNVPIQTGSYSNLTSSTATTAFNTFDRI 560 Query: 312 -YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------AGDMPSYRVRKADTTVELPS 364 G+ LH P + G + L++ TE S V G AG P + R +TV + Sbjct: 561 DVGLTLHIKPQITDGGILKLQLYTEDSAIVAGTTNVTTNPAG--PEFTKRSIQSTVLADN 618 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G IVL GL++D+ Q +PLL IP +G LFR+ R +T + + ++PV + Sbjct: 619 GEIIVLGGLMQDNYQVTNSKVPLLGDIPWIGQLFRSENKTRAKTNLLV-----FLRPVII 673 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 D + A+A NR + I G Sbjct: 674 ADRAT----------AQAVTANRYDYIQG 692 >gi|56461126|ref|YP_156407.1| Type II secretory pathway, component PulD [Idiomarina loihiensis L2TR] gi|56180136|gb|AAV82858.1| Type II secretory pathway, component PulD [Idiomarina loihiensis L2TR] Length = 708 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 10/186 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + V+ A+ + T LA P++ + + ASF G Q + S+TG +V Sbjct: 455 WAAVVQAVTQDTRSNILATPSIVTVDNEEASFLVG-QEVPTISGSTTGDNNDNPFQTVDR 513 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + G+ L TP + + + I+ EVS + G A D+ + R+ TTV G TIV Sbjct: 514 TEIGIKLKVTPQINEGDAVQMTIEQEVSS-LSGATAVDVIINK-RELKTTVMADDGETIV 571 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLS 428 L GL+ +D+Q+ +PLL IPILG LF ++ ++++ + + P +V+ MR+LS Sbjct: 572 LGGLIDEDVQESVSKVPLLGDIPILGKLFSSTSTSKQKRNLMVFIRPTIVRDGNRMRELS 631 Query: 429 RPDDHY 434 +Y Sbjct: 632 SAKYNY 637 >gi|118475530|ref|YP_892173.1| type II and III secretion system protein [Campylobacter fetus subsp. fetus 82-40] gi|118414756|gb|ABK83176.1| type II and III secretion system protein [Campylobacter fetus subsp. fetus 82-40] Length = 512 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 29/227 (12%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 TGS+ P++S GG FV GG S + VL+ LE + ++ P + Sbjct: 283 TGSAGNPAQSLRNITGG-FVLGGGI--------NLSMDGVLNFLETKGRTKVVSSPKIMT 333 Query: 280 ISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDY-------GVVLHFTPTVLSPGRIG 329 ++ Q A T G Y+ +T T+VT Y G++L+ P V GRI Sbjct: 334 MNNQQALITVGDNINYRVQEDTTNNNTQTAVTNTTYTQYSIFIGILLNLLPEVSDDGRIM 393 Query: 330 LRIQTEVSEPVIG------VNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 LRI +S G N ++ P +K T V++ SG TI+L GL+ + + Sbjct: 394 LRINPSLSSFKYGDDNRRQANIREIAPDTLQKKLSTVVQVNSGDTIILGGLIGETKGKDN 453 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK---PVAMRD 426 +P+L IP+ G LF++++ + TE+ TP ++ P +R+ Sbjct: 454 TSVPVLGDIPLFGNLFKSTKDSVSTTELIFIITPKVINNETPKQIRN 500 >gi|215919282|ref|NP_820868.2| type II and III secretion system family protein [Coxiella burnetii RSA 493] gi|206584166|gb|AAO91382.2| type 4 pili secretin (outer membrane porin) [Coxiella burnetii RSA 493] Length = 353 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 16/192 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + L ALE+ + L+ P L + Q+A SG Y+ + G TSVT + Sbjct: 168 LDLTLSALEQEGRAQVLSCPELMTNNRQTAIIESGEAIPYQE-KTGQGNTSVTFKKATLR 226 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP VL RI L++ + + +P+ + ++ T V + + T+VL G+ + Sbjct: 227 LKVTPVVLPGKRILLQLNVN-QDKMSSFLVNGVPTIQTQQLTTKVMVNNQETVVLGGIYE 285 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 QQ + GIP L KIPILG LFR+ + + E ++ I TP ++ P Sbjct: 286 QSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISP-------------- 331 Query: 436 VEDDAKAFFFNR 447 E + + FNR Sbjct: 332 YEKKSHQYLFNR 343 >gi|315636411|ref|ZP_07891655.1| general secretion pathway protein D [Arcobacter butzleri JV22] gi|315479277|gb|EFU69966.1| general secretion pathway protein D [Arcobacter butzleri JV22] Length = 478 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 117/243 (48%), Gaps = 22/243 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGG--KFVSEG-------- 242 QV ++ I EV +++ +IG + I SS S + +++ G + E Sbjct: 175 QVYVQAKIIEVNNELVNKIGISYGIINSSARSDGINAISSNLNGGSNAIKEAVDTLGIRM 234 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D ++K L + L+ L++ A+ ++EP++ AI + +S G + + S+ T Sbjct: 235 NDLNIKSGL---ALGASLNLLQQNGALDIVSEPSILAIDNKESSIYVGEKISVEISSTLT 291 Query: 303 GA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 T+ D G+ L P + S ++ L I T + E + V+AG P ++ Sbjct: 292 DGGLQRTNYEREDIGLTLKVKPRISSDTKLTLEINT-LLEGIKSTSVSAGQNPDTLKKEI 350 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T L +G ++++ GL+++ + +++ +P+L IP+ G LF+N ++ + I TP Sbjct: 351 KTAAILNNGESVIIGGLIENKNETIEQKVPVLGDIPLFGELFKNDSKMNKKNNLVIIVTP 410 Query: 417 FLV 419 +++ Sbjct: 411 YMI 413 >gi|170694279|ref|ZP_02885433.1| general secretion pathway protein D [Burkholderia graminis C4D1M] gi|170140702|gb|EDT08876.1| general secretion pathway protein D [Burkholderia graminis C4D1M] Length = 781 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 33/221 (14%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVS 299 F V+G +L AL + L+ P L + + A G Y ++ Sbjct: 493 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNIPIQTGSYSNLT 546 Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYR 352 S +++ T+D G+ LH P + G + L++ TE S V G P + Sbjct: 547 SGNASSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVNGTTNATTNPAGPQFT 606 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +TV +G IVL GL++D+ Q +PLL IP +G LFR+ + NR +T + + Sbjct: 607 KRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKNRNKTNLMV 666 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 FL +PV + D D A+A NR + I G Sbjct: 667 ----FL-RPVIIGD----------RDTAQAVTSNRYDYIQG 692 >gi|254283571|ref|ZP_04958539.1| general secretion pathway protein D [gamma proteobacterium NOR51-B] gi|219679774|gb|EED36123.1| general secretion pathway protein D [gamma proteobacterium NOR51-B] Length = 682 Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 9/188 (4%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-S 300 G V D + +L+ALE L+ P+L + + A T G Q + T S + Sbjct: 434 GATLGWGAVDDDLTMTVILNALETQGNANILSTPSLLTLDNEEAYITVGQQVPFVTGSFT 493 Query: 301 STGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 +TG+ ++ + G+ L TP V + L I EVS + Sbjct: 494 NTGSGDSARNPFQTIERQNVGITLKVTPQVNEGDSVVLDIVQEVSSISQQLLVASDVITN 553 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 RK +T V G +VL GL+KD++Q ++G+P+LS IP+LG LFRN ++ + + Sbjct: 554 ERKIETKVLASDGDIVVLGGLVKDEVQDSQQGVPILSSIPLLGRLFRNDVVEVSKSNLLV 613 Query: 413 AATPFLVK 420 P +V+ Sbjct: 614 FIRPTIVR 621 >gi|307719942|ref|YP_003891082.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] gi|306978035|gb|ADN08070.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] Length = 502 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 28/240 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV ++ I EV + Q+G + G S P + S G +V G ++ Sbjct: 261 QVLIEAKILEVTLNKSHQLGINWDVVGKSVFSPGDTLNIQ-----QSLGLTGAVAGTVNY 315 Query: 254 FS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG--QHLYKTVSSSTGATS--- 306 + F +++A+++ I T++ P + ++GQSA +SG + K V +S G ++ Sbjct: 316 SANNFNALINAIDQNGNIDTISNPRIKVLNGQSAIISSGKLVPYWEKQVDTSQGTSTNNI 375 Query: 307 VTTHDY-----GVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMPSYR 352 + T++ GV + TPTV+ GRI L + T +S + GV+ P Sbjct: 376 LVTYNRRDVLDGVTMGVTPTVMENGRIMLNV-TPISSSIESEKVYHDDQGVSVATAPIIN 434 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +++A T + + +++ GL+ I++ K+ +P LS +P++G+LF +E+ E+ I Sbjct: 435 IKEAGTIIYAKNNDLVLIGGLMSTSIKKNKQEVPFLSNLPLVGSLFTQVNNTKEKKELVI 494 >gi|332295419|ref|YP_004437342.1| type II and III secretion system protein [Thermodesulfobium narugense DSM 14796] gi|332178522|gb|AEE14211.1| type II and III secretion system protein [Thermodesulfobium narugense DSM 14796] Length = 630 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 42/247 (17%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH--------SITGSSS-GPSKSFAADFGGKFVSEGGDF 245 Q+ ++V + E+ +KQ+G Q + TG+ + G SKS ++ + G + Sbjct: 403 QIEVQVMVIELDNQGIKQLGIQWPNNIQFSGNATGTRTYGTSKSKSSVYTGTISN----- 457 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-KTVSSSTGA 304 L+A + L++P + A+ GQ S+ G LY VSS+TG Sbjct: 458 ----------ITASLYAQLNNNNAKILSDPRILALDGQD-SYVFAGDKLYIPQVSSATGG 506 Query: 305 T-SVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-------- 353 + TT++Y GV+L TP + G I + + P + GD+ ++ Sbjct: 507 NVTYTTNEYDVGVLLKITPFIGENGEITIHV-----TPSVSAFNGDVTQLQINQPFTTTI 561 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+AD T + G T + GL+ D+ ++ +P L +P+LG +FR + TE+ Sbjct: 562 READVTARVKDGQTFYIGGLISDEQRKQTISVPGLGNMPLLGPMFRYDYNMKSRTEVIFL 621 Query: 414 ATPFLVK 420 TP +VK Sbjct: 622 LTPHIVK 628 >gi|77459397|ref|YP_348904.1| type II and III secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77383400|gb|ABA74913.1| general secretion pathway protein D [Pseudomonas fluorescens Pf0-1] Length = 783 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 33/269 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++V++LL+ QV ++ I EV D + G Q TG+ G A+ GG ++ Sbjct: 455 REVIDLLD-QRRAQVVIESLIVEVGEDDASEFGVQWQ-TGNLGGKGVIGGANLGGSGINV 512 Query: 242 GGDFS------------VKGVLDR------FSFETVLHALERATAIRTLAEPTLTAISGQ 283 G S V G +D + + AL+ L+ P L + + Sbjct: 513 NGKTSLDVLPQGLNLGYVNGTVDIPGIGKILDLKVLARALKSKGGTNVLSTPNLLTLDNE 572 Query: 284 SAS--------FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +AS F SG +S+ +VT + G+ L+ P + G + L I E Sbjct: 573 AASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQE 632 Query: 336 VS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 VS N+ + + + R DT++ L G +VL GLL+D Q + +P LS I Sbjct: 633 VSSIDERASAAANSAGIVTSK-RALDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNI 691 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P +GALFRN R + +T + + P++++ Sbjct: 692 PGIGALFRNERRSITKTNLMVFLRPYIIR 720 >gi|15805800|ref|NP_294498.1| general secretion pathway protein D [Deinococcus radiodurans R1] gi|6458483|gb|AAF10350.1|AE001932_2 general secretion pathway protein D, putative [Deinococcus radiodurans R1] Length = 740 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 47/255 (18%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR- 253 Q+ ++V I EV L+ +G ++ A FGG V+ G + + Sbjct: 504 QINVQVRIQEVNERALQSLGL-------------NWRATFGGFNVAVSGGTGLAATFNPT 550 Query: 254 -----FSFETVLHALERATAIRTLAEPTLTAISGQ-SASFTSGGQHLYKTVSSSTGATSV 307 F+ L ALE R + + +T SGQ S S T G Q+ +SS A SV Sbjct: 551 QSFLGFNIFPTLTALETQGLTRRVYDGNVTMQSGQRSLSATGGAQN-----ASSGAAASV 605 Query: 308 TTH------------------DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 + DYG+ L F +P V G I LRI+ +V++P + A + Sbjct: 606 KSGGRLEINIPSAAGNIVRQIDYGLNLDFFSPQVAPDGTITLRIRGQVNQPATAITADSL 665 Query: 349 PS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P+ + +A +T+ +G TI+++GLL + G+P LS +P +GA F R + Sbjct: 666 PNLIDFTNSEAQSTITFKNGQTILMSGLLGSTETTNRSGVPFLSSLPGVGAAFGEKRTEK 725 Query: 406 EETEIFIAATPFLVK 420 ++++ + T +VK Sbjct: 726 TQSQLLVIITGTVVK 740 >gi|56459478|ref|YP_154759.1| Type II secretory pathway [Idiomarina loihiensis L2TR] gi|56178488|gb|AAV81210.1| Type II secretory pathway [Idiomarina loihiensis L2TR] Length = 557 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 116/261 (44%), Gaps = 34/261 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFVSE------GGDFS 246 QV L+ I EV + G+Q I S SG + F DF G S GG F Sbjct: 284 QVILEARIIEVTLND----GYQQGINWSDIYSG-NAGFGVDFNGVTPSNATSAAIGGLFG 338 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----- 301 + D +F ++ L+ ++ L+ P ++A + Q A G + T +S Sbjct: 339 LTYTDDGNNFSGMIEMLQTQGTVQVLSNPRVSASNNQKAVIKIGEDEYFVTDVTSRTVLN 398 Query: 302 TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRI-----QTEVSEPVIGVNAGD-- 347 TG S + D G+ L TP + G + L + +T E VI V+ + Sbjct: 399 TGGASSSDSDIEFTPFFSGISLDVTPQISDDGEVILHVHPSVVETSEQEKVITVSGEESV 458 Query: 348 MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P R +R++DT V+ +G +VL GL++ + +PLL IP+LG LF N R + Sbjct: 459 LPLARSNIRESDTIVKARNGEIVVLGGLMQTTNSEEVGKVPLLGDIPLLGELFTNRRNRQ 518 Query: 406 EETEIFIAATPFLVKPVAMRD 426 E+ E+ I P +V RD Sbjct: 519 EKKELVILLKPTVVGVDTWRD 539 >gi|300114921|ref|YP_003761496.1| general secretion pathway protein D [Nitrosococcus watsonii C-113] gi|299540858|gb|ADJ29175.1| general secretion pathway protein D [Nitrosococcus watsonii C-113] Length = 833 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 17/242 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------ADFGGKFVSEGGDFSV 247 QV ++ TIAEV Q G Q T + + + G + + GG F+ Sbjct: 541 QVLVEATIAEVALTGSLQYGLQWYFTNDLASGQGAGGQGALPALGEGGLQALMAGGGFTY 600 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---HLYKTVSSSTGA 304 D +L L + L+ P L A+ Q+A G Q +T Sbjct: 601 -AFADGGVVRALLRLLASENKVEILSSPQLLALDNQTAEIRVGDQVPIQQGQTTGIGGTT 659 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADT 358 + D GV+L TP V + GR+ + + EV++ P G P++ R + Sbjct: 660 QQIRYRDTGVLLTVTPRVNAGGRVTMELTQEVTDVGGTSLPGGATTVGGNPTFLQRNFQS 719 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + SG TIVL GL++++ + G+P L K+P++G LF + +R+ TE+ + TP + Sbjct: 720 VVTVQSGETIVLGGLIRNNDAFNQSGVPFLYKLPLIGPLFGTTTRSRQRTELVVLMTPRV 779 Query: 419 VK 420 V+ Sbjct: 780 VR 781 >gi|330958220|gb|EGH58480.1| general secretion pathway protein D [Pseudomonas syringae pv. maculicola str. ES4326] Length = 773 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 8/173 (4%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSSTGATSVTT 309 + + L ALE + L+ P+L ++ Q A G Q T +S+T +SV Sbjct: 570 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTTVNTNASATTLSSVEY 629 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGG 366 GV+L P + G + + IQ +VS+ N+ D+ P R T V SG Sbjct: 630 VQTGVILDVVPRINPGGLVYMDIQQQVSDADNSANSTDLNGNPRISTRSVSTQVAAQSGQ 689 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF N+ +++ TE+ + TP ++ Sbjct: 690 TVLLGGLIKQDNAESVSAVPYLGRIPGLKWLFGNTSKSKDRTELIVLITPRVI 742 >gi|330881978|gb|EGH16127.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. race 4] Length = 334 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 27/252 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248 QV ++ I EV D Q G Q TG+ +G + GG ++ GG S+ Sbjct: 17 QVVIESLIVEVSEDDANQFGVQWQ-TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGL 75 Query: 249 ------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G+ + + + AL+ L+ P L + ++AS G + Sbjct: 76 NVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 135 Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 T S TG +V + G+ L+ P + G + L I EVS + Sbjct: 136 TGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASG 195 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R DT++ L G +VL GLL+D Q E +P LS+IP+LG LFRN + +T Sbjct: 196 TVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKT 255 Query: 409 EIFIAATPFLVK 420 + + P++++ Sbjct: 256 NLMVFLRPYIIR 267 >gi|322831067|ref|YP_004211094.1| general secretion pathway protein D [Rahnella sp. Y9602] gi|321166268|gb|ADW71967.1| general secretion pathway protein D [Rahnella sp. Y9602] Length = 659 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 13/199 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHD 311 + +L AL + LA P++ + + ASF G + +T S +SV Sbjct: 423 WNVLLTALSTSNKNDILATPSIVTLDNKEASFNVGQEVPSLSGSQTTSGDNIYSSVVYKT 482 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G L TP + + + I+ EVS N+ P++ R V + +G T+VL Sbjct: 483 VGTKLKVTPQINEGDSVLMEIEQEVSSVDTSTNSSLGPTFNTRTISNAVLVRTGETVVLG 542 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GLL D ++ K +PLL IP +G LFR + + + + ++P +RD D Sbjct: 543 GLLDDSTKETKSKVPLLGDIPWIGNLFRYTSTESAKRNLMV-----FIRPTIIRD----D 593 Query: 432 DHYSVEDDAKAFFFNRVNK 450 + YS + K F ++ K Sbjct: 594 EVYSSISNKKYSHFQKIQK 612 >gi|88704137|ref|ZP_01101852.1| General secretion pathway protein D [Congregibacter litoralis KT71] gi|88701964|gb|EAQ99068.1| General secretion pathway protein D [Congregibacter litoralis KT71] Length = 696 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 115/278 (41%), Gaps = 52/278 (18%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAADFGGKFV---SEGGDF 245 QV ++ I E+ + +G Q GSS S S A + G + S+GG Sbjct: 362 QVLVEAIIVELEVTDGQDLGLQWLFANDSGFYGSSINASDSRARNIAGAILPPDSDGGTG 421 Query: 246 SVKGVLD-----------------------RFSFETVLHALERATAIRTLAEPTLTAISG 282 S G D S +L+ALE + L+ P+L + Sbjct: 422 STTGDFDVGNLAAALAGSAGLSLGWGVVGEDLSMTVILNALEEQSNANILSTPSLLTLDN 481 Query: 283 QSASFTSGGQHLYKTVS-SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 Q A T G Q + T S ++TG ++ + G+ L TP V + L I+ Sbjct: 482 QEAFITVGQQVPFITGSFTNTGGNNGAQNPFQTIERENVGITLTVTPQVNEGDSVVLEIE 541 Query: 334 TEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 EV+ V A D+ + RK T V G +VL GL+KDD+Q ++ +P+L Sbjct: 542 QEVNSLTGATLVASAAAADLITNE-RKIRTKVLAEDGRVVVLGGLIKDDVQSTEQRVPIL 600 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IP LG LFRN + +T + I ++P +RD Sbjct: 601 GDIPYLGRLFRNDAVSVSKTNLMI-----FIRPTIIRD 633 >gi|269140603|ref|YP_003297304.1| Type II secretory pathway, component HofQ [Edwardsiella tarda EIB202] gi|267986264|gb|ACY86093.1| Type II secretory pathway, component HofQ [Edwardsiella tarda EIB202] gi|304560390|gb|ADM43054.1| Type IV pilus biogenesis protein PilQ [Edwardsiella tarda FL6-60] Length = 409 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 105/235 (44%), Gaps = 14/235 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--AADFGGKFVSEGGDFSVKGVLD 252 QV L I + ++ L+++G + SG AAD + S G F V + Sbjct: 171 QVQLAAHIVSISQEGLRELGIRWYSGDERSGGQDRLRGAAD---AYFSAG--FQVARIGG 225 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + + L ALER + +A P L A GQ+AS G + Y G +++ + Sbjct: 226 Q-TLAVALAALERQDKVAIIASPHLMAAHGQTASIKQGSELPYAVSGGERGVSTMEFKEA 284 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVL 370 + + TP VL+ I L +Q + P V GD + + K + T V L G T +L Sbjct: 285 VLGMSVTPRVLADAHIELALQISQNMPGRVVRQGDSEALAIDKQEITTQVTLSDGDTAML 344 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAATPFLVKPVA 423 G+ + Q G P L+ +P+LG L R + R R E IFI TP L+ P + Sbjct: 345 GGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFI--TPTLLSPAS 397 >gi|89093502|ref|ZP_01166450.1| type 4 fimbrial biogenesis protein PilQ [Oceanospirillum sp. MED92] gi|89082192|gb|EAR61416.1| type 4 fimbrial biogenesis protein PilQ [Oceanospirillum sp. MED92] Length = 702 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 7/151 (4%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + +G+ A SG + Y+TV G S+ D + L TP + RI + Sbjct: 551 VSQPKVLTTNGKQAKIESGSEIPYQTVED--GEVSIEFKDVVLSLDVTPRINPGDRIAMD 608 Query: 332 IQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + +++ IG + G++ S + TTV +P G TIVL G+ K++ + +PLL Sbjct: 609 LL--ITQDSIGQVLPNGEI-SIDNNELQTTVVVPDGQTIVLGGVFKNETSETINKVPLLG 665 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420 +PI+G LFRN E+TE+ I TP LV+ Sbjct: 666 DLPIMGPLFRNKENQAEKTELLIFITPKLVR 696 >gi|261823291|ref|YP_003261397.1| outer membrane porin HofQ [Pectobacterium wasabiae WPP163] gi|261607304|gb|ACX89790.1| type IV pilus secretin PilQ [Pectobacterium wasabiae WPP163] Length = 424 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + + + T Sbjct: 258 LMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 317 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P +L GRI L ++ + P + GD + ++ T V + G TIVL G+ + Sbjct: 318 PDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQ 377 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P+L ++P+ G LFRN E+ I TP L+ Sbjct: 378 QKKNSGSQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420 >gi|229590685|ref|YP_002872804.1| general secretion pathway protein D/Q [Pseudomonas fluorescens SBW25] gi|229362551|emb|CAY49458.1| general secretion pathway protein D/Q [Pseudomonas fluorescens SBW25] Length = 788 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 34/257 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG----------- 243 QV ++ I EV D + G Q +G +G + GG + GG Sbjct: 470 QVVIESLIVEVGEDDANEFGVQWQ-SGDLAGKGVIGGTNLGGSGLQTGGLTSIDALPGGL 528 Query: 244 -------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS--------FT 288 ++ GV + + + AL+ L+ P L + ++AS F Sbjct: 529 SVGYLSGTVNIPGVGNVMDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 588 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGV 343 SG +S+ +VT + G+ L+ P + G + L I EVS Sbjct: 589 SGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQEVSSIDERASSSAT 648 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +AG + + R DT++ L G +VL GLL+D Q E +P LS IP LGALFRN R Sbjct: 649 SAGVVTNKRA--IDTSILLDDGQIMVLGGLLQDGYSQSNEAVPWLSSIPGLGALFRNERR 706 Query: 404 NREETEIFIAATPFLVK 420 +T + + P++++ Sbjct: 707 ATTKTNLMVFLRPYIIR 723 >gi|253699252|ref|YP_003020441.1| general secretion pathway protein D [Geobacter sp. M21] gi|251774102|gb|ACT16683.1| general secretion pathway protein D [Geobacter sp. M21] Length = 635 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 108/250 (43%), Gaps = 18/250 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLD 252 QV ++ IAEV + K++G Q + +S + S F G G + L Sbjct: 352 QVFVQAMIAEVSANKAKELGVQWGVIAGASNGTLSTVGTFDPFGAVAGLSGALQLADTLG 411 Query: 253 RFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTG 303 F L AL A+ L+ P + + A G L T +STG Sbjct: 412 ITPPDGGVALFPATLKALHSNGALNVLSTPNIMTSDNKEAEIFVGENVPFLSGTNLTSTG 471 Query: 304 AT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--RVRKADTT 359 + S+ D G++L P + I L I E+S V P+ R A T+ Sbjct: 472 LSQQSIERKDTGIILKIKPQISEGEYIKLDIYQEISA-VKDFGTATNPNLGSTKRSAKTS 530 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + + T+++ GL++D Q + IPLL IP+LG LF+ R R++T + I TP ++ Sbjct: 531 VVVKNTDTVIIGGLIQDTDQVTESKIPLLGDIPLLGWLFKTKRTTRDKTNLLIMLTPRII 590 Query: 420 KPVAMRDLSR 429 K RD++ Sbjct: 591 KDA--RDMAE 598 >gi|78484984|ref|YP_390909.1| type II and III secretion system protein [Thiomicrospira crunogena XCL-2] gi|78363270|gb|ABB41235.1| Type II secretion pathway protein D homolog [Thiomicrospira crunogena XCL-2] Length = 569 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 113/244 (46%), Gaps = 27/244 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLDR 253 QV ++ T+ EV Q G S S+SG S + G +S+ +FS+ + Sbjct: 300 QVLIEATVVEVELSDQYQAGVDWSAVNSNSGGSSDISQSLLGTNLSKDPNFSINLSSIGT 359 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVT 308 ++F + L++ + L+ P + A++ Q+A +Y TV S++ + VT Sbjct: 360 WNFNIGIKMLQQFGDAKVLSSPKIMAMNNQAALLKVVNNEVYFTVEVNRESATASSAGVT 419 Query: 309 THD-------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----------AGDMPS 350 T++ G ++H TP +S I L I+ +S V VN +P Sbjct: 420 TYETTVHTVPVGFMMHVTP-FISDDEISLNIRPTLSRIVGYVNDPNPDLARENIESKVPI 478 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREET 408 + R+ D+ + L + T ++ GL++D ++G+P LS +P +G LF R+ ++ E Sbjct: 479 IQEREMDSVLRLRNRQTAIIGGLIQDTHDNQRQGVPGLSDLPWIGDLFSYRDDTVSKSEL 538 Query: 409 EIFI 412 IFI Sbjct: 539 IIFI 542 >gi|319785509|ref|YP_004144985.1| general secretion pathway protein D [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171397|gb|ADV14935.1| general secretion pathway protein D [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 707 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 111/250 (44%), Gaps = 34/250 (13%) Query: 195 QVTLKVTIAEVR---------RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 QV L+ IAEV R + G + S++ + G + + F + ++ Sbjct: 439 QVMLEAVIAEVTLNDDLKYGLRWFFENGGMKISVSDVAKGVAAAALPGFNWSYATD---- 494 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVS 299 + + L+AL T + ++ PT+ A++ Q A G Q + Sbjct: 495 ---------NIQVTLNALSSITDVNVISAPTIMALNNQKAVLQVGDQVPIATRQVVDQTL 545 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADT 358 S+ SV D GV+L TP + + GR+ L I+ EVS ++G D P+ + RK T Sbjct: 546 GSSPVVSVEMKDTGVILTVTPRINNAGRVMLDIEQEVSNVTKTTSSGIDSPTIQQRKIQT 605 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + G ++ L GL++ + +P+L IPI+G F+ + TE+ I Sbjct: 606 RVLVNDGESLALGGLIQSRNNVDRTQVPILGDIPIIGNAFKQKTDSIGRTELII-----F 660 Query: 419 VKPVAMRDLS 428 ++P +RD++ Sbjct: 661 IRPHVVRDIN 670 >gi|326315687|ref|YP_004233359.1| general secretion pathway protein D [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372523|gb|ADX44792.1| general secretion pathway protein D [Acidovorax avenae subsp. avenae ATCC 19860] Length = 804 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 106/234 (45%), Gaps = 30/234 (12%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G SI S+SG K + G++ + G L F LE L+ Sbjct: 502 GNATSIASSASGLGKGLNVAIAPRI---NGNYYL-GALANF--------LENTGDANVLS 549 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS--SSTGA------TSVTTHDYGVVLHFTPTVLSP 325 P L + + A G + T S ++TG+ T+V D G++L P + Sbjct: 550 TPNLMTLDNEEAQIIIGNNVPFVTGSYANTTGSSTVNPFTTVERKDVGLMLRVRPQINEN 609 Query: 326 GRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G + L + EVS+ G NA + P+ R ++TV + G IVL GLL+D ++ Sbjct: 610 GTVKLSLYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGNVIVLGGLLEDRYSMGQDK 669 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD----DHY 434 +PL+ +P++G LFRN R++T + + FL +PV +RD + D D Y Sbjct: 670 VPLMGDLPVVGGLFRNENRRRQKTNLMV----FL-RPVVIRDTATSDALMMDRY 718 >gi|187925905|ref|YP_001897547.1| general secretion pathway protein D [Burkholderia phytofirmans PsJN] gi|187717099|gb|ACD18323.1| general secretion pathway protein D [Burkholderia phytofirmans PsJN] Length = 791 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 33/221 (14%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVS 299 F V+G +L AL + L+ P L + + A G Y ++ Sbjct: 493 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSNLT 546 Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYR 352 S+T ++ T+D G+ LH P + G + L++ TE S V G N P + Sbjct: 547 SATATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTNNAATNPAGPEFT 606 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +TV +G IVL GL++D+ Q +PLL IP +G LFR+ + R +T + + Sbjct: 607 KRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNKTNLMV 666 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 FL +PV + D A+A NR + I G Sbjct: 667 ----FL-RPVIISD----------RGTAQAVTSNRYDYIQG 692 >gi|166713403|ref|ZP_02244610.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzicola BLS256] Length = 766 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 86/316 (27%), Positives = 138/316 (43%), Gaps = 58/316 (18%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----F 215 AV + T L +S +A S + V+ L++ QV ++ +AEV Q G F Sbjct: 451 AVAETNTLLVRSTPQSWA--SIRDVIEKLDVM-PMQVHIEAQVAEVNLTGQLQYGVNWYF 507 Query: 216 QHSIT-----GSSSGPSKSFAA------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 ++++T + GP+ AA D G + G ++ G + ++ AL+ Sbjct: 508 ENAVTTPFDANDNGGPALPSAAGRNIWGDIAGSVTNTGVGWTFLGK----NAAAIISALD 563 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHF 318 + T +R L P++ + A+ G + + S +TG +SV D GV+L Sbjct: 564 QVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKV 623 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY------------------RVRKADTTV 360 P V G + L I E+S P G P R+ T Sbjct: 624 RPRVTKDGMVFLDIVQEISTP------GARPDACTAATTTTVNSAACNVDINTRRVKTEA 677 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFIAATPFLV 419 + SG TI+LAGL+ D G+P+LSK+P++GALF R +R R E+ + TP +V Sbjct: 678 AVQSGDTIMLAGLIDDSTTDGSSGVPMLSKLPVVGALFGRKTRDTRRR-EVIVLITPSIV 736 Query: 420 K-PVAMRDLSRPDDHY 434 + P R+L+ D Y Sbjct: 737 RNPQEARNLT---DEY 749 >gi|294142972|ref|YP_003558950.1| general secretion pathway protein D [Shewanella violacea DSS12] gi|293329441|dbj|BAJ04172.1| general secretion pathway protein D [Shewanella violacea DSS12] Length = 712 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 13/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGA----TSVTT 309 F ++ A+ T LA P++T + Q ASF G + L + SSS G T+V Sbjct: 447 FAALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSQSSSNGNENPFTTVER 506 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + GV L P + + L I+ EVS + G A D+ ++ R+ TTV SG +V Sbjct: 507 KEVGVKLKVIPQINEGSSVKLTIEQEVS-GINGKTAVDV-TFATRRLTTTVMADSGQIVV 564 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ +++Q+ + +P L +P++G LFR+S ++++ + I +KP +RD Sbjct: 565 LGGLINEEVQESVQKVPFLGDLPLIGHLFRSSSSSKKKKNLMI-----FIKPTIIRD 616 >gi|218294935|ref|ZP_03495789.1| type II and III secretion system protein [Thermus aquaticus Y51MC23] gi|218244843|gb|EED11367.1| type II and III secretion system protein [Thermus aquaticus Y51MC23] Length = 751 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 30/242 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR- 253 QV L+V I EV+ ++ + +G + + GG V+ D + + D Sbjct: 528 QVNLRVRIQEVQSNLTRSLGLKWNTIA-------------GGNVVASILDSGLSLIFDST 574 Query: 254 -----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + L AL+R R L + T +S Q+A SG L + V + Sbjct: 575 RSLAALNIVATLDALQRQGLSRALRDVNQTVLSNQTARLQSGETFLIRRVVENR--VERV 632 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTTVELP 363 D G+++ TP + + G+I L I+ EVS PV GD+ + + TT+ + Sbjct: 633 PFDIGIIVEVTPQITADGQILLNIRAEVSGNVQRNPV----DGDVDRFTKQVVTTTLRVR 688 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G T+VL GL + Q +G+P+L IP++G LF+ + E+ + T ++K A Sbjct: 689 DGQTVVLGGLTSQENTQTVQGVPILMDIPLIGELFKQRTGETTDRELLVVITADILKETA 748 Query: 424 MR 425 R Sbjct: 749 ER 750 >gi|290968265|ref|ZP_06559808.1| bacterial type II and III secretion system protein [Megasphaera genomosp. type_1 str. 28L] gi|290781747|gb|EFD94332.1| bacterial type II and III secretion system protein [Megasphaera genomosp. type_1 str. 28L] Length = 394 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 9/164 (5%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHD 311 FS+ + AL LA P + A +G++A G + L + +++ S++ + Sbjct: 198 FSWLGQIQALSEQGKAEILASPHIMASNGKAAQILIGDRVPVLKEHLANGEKTASISYEE 257 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIV 369 GV L++TP + G + I+ EVS PV +M +YR+ R+A T V + T+V Sbjct: 258 AGVKLNYTPYIHQDGSVTASIEAEVSTPVW---VPEMKAYRISTRRAKTIVRMKPDKTLV 314 Query: 370 LAGLL-KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + GL+ K++++ ++ +PLL IP++G LF++ +ETE+ I Sbjct: 315 IGGLIGKEEMEHFRK-VPLLGDIPLVGKLFQSRYKTAKETEVVI 357 >gi|88799076|ref|ZP_01114657.1| Type II secretory pathway, component PulD [Reinekea sp. MED297] gi|88778303|gb|EAR09497.1| Type II secretory pathway, component PulD [Reinekea sp. MED297] Length = 653 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 121/286 (42%), Gaps = 40/286 (13%) Query: 187 LLNIAGEDQVTLKVTIA---EVRRDILKQIGFQHSITGSS---------SGPSKSFAADF 234 ++ + G D TL V A EV +D + + + G+S G S++ + Sbjct: 351 IVEVTGNDTDTLGVQWATNPEVVQDGVPFLSVSSEVAGASVGNLAQSVGQGISQAGGSPL 410 Query: 235 GGKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G G F G+ D R F + ALE A+ L+ P++ + A T G Sbjct: 411 GALTSVPAGTF--MGLADPFGNRVDFGVAIQALESASNTNFLSTPSILTLDNSEAVITVG 468 Query: 291 GQHLYKTVSS--STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAG 346 +KT S ++ D G L P + G I L + E + + +A Sbjct: 469 NSVPFKTGGSGDEDNPFTIERQDVGTTLTVIPHIQQNGTIRLEVDQIVESVDETVSYDAS 528 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+ + + R+ T V + SG TIVL GL++D + +L+ +P+L IPI+G LF++ + Sbjct: 529 DVVTKK-RQVTTQVLVNSGETIVLGGLIQDQVSELESRVPVLGYIPIIGHLFKSKSTLKT 587 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +T + I P + +ED+ NR+N ++ Sbjct: 588 KTNLLIILKPSV-----------------IEDNMDEIRANRLNGVW 616 >gi|152990751|ref|YP_001356473.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2] gi|151422612|dbj|BAF70116.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2] Length = 507 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 19/202 (9%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------STGATSVTTHD 311 +++ LE+ + TL+ P L ++ Q A + G Y +S G S T Sbjct: 305 IINFLEKNGQVITLSNPKLMTLNNQPAIISIGDTINYNVPTSIVISQNGGLGTQSFTPSS 364 Query: 312 Y--GVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGDM----PSYRVRKADTT 359 G++L+ TP + G I LRI +SEP N + P +K + Sbjct: 365 VFIGILLNITPEITENGEIILRINPSISEPRDPKQLDQTTNENGIRQIAPDISEKKISSV 424 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V++ G T++L GL+ + G+P+L IP+LG LFR+ N + E+ P ++ Sbjct: 425 VKVKDGSTLILGGLISNIKNFTINGVPVLRDIPVLGGLFRSKARNNKRFELVFIIKPRII 484 Query: 420 KPVAMRDLSRPDDHYSVEDDAK 441 K + + S D YS+ D AK Sbjct: 485 KESSTDNYSLKDLGYSIVDHAK 506 >gi|307626976|gb|ADN71280.1| general secretion pathway protein D [Escherichia coli UM146] Length = 421 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 31/243 (12%) Query: 204 EVRRD--ILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVSEGGDFS 246 +V RD +++ + F+ S+ S G SFAA G + GG F Sbjct: 186 DVARDQVLIQSLMFETSL---SDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGSF- 241 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTG 303 G+ D L A++ + + ++ P + SGQ+ + G + K S G Sbjct: 242 --GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGESAG 299 Query: 304 AT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 ++ HD GV L TP V+ G++ L I T A D+ + + R+ TT Sbjct: 300 VNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDIITNQ-RQIQTT 358 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V++ G T++L GL+ + +P++SKIP++G +F + + E+ ++I T ++ Sbjct: 359 VQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKAXSNEQRIMYILLTAHII 418 Query: 420 KPV 422 +P+ Sbjct: 419 RPL 421 >gi|94959236|gb|ABF47508.1| GspD [Leptospira biflexa serovar Patoc] Length = 595 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 24/259 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 KK++ +L+ QV L+V I E+ L G + G + A GG + + Sbjct: 311 KKIIKILDTP-RKQVLLEVLIVELSSTDLNDFGIDWRYQELAYGQFNTGLAAQGG-VIDK 368 Query: 242 GGDFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + L FS +L+A L+ P + + Q A G Sbjct: 369 NGRPTNVNTLSGFSLGFIRRGGQQIIGILNANSTNENFNVLSAPQILTLDNQEAEINVGQ 428 Query: 292 QHLYKTVSSSTG-----ATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +T + + G A +V +Y G+ L FTP + RI L + E+ V G+ Sbjct: 429 DVPVRTQNRNAGLGGDNAVTVANFEYRPTGIKLKFTPHINKNNRITLDLYQEIKN-VAGI 487 Query: 344 NA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 ++ G P++ R TT+ + + TIV+ GLL +D Q+ + IP+L +IP+LG LFR Sbjct: 488 SSEATGGNPTFNKRDIKTTIVVDNIQTIVIGGLLSNDKQKKVQKIPILGEIPLLGTLFRR 547 Query: 401 SRFNREETEIFIAATPFLV 419 + +T + + TP ++ Sbjct: 548 TTNQNRKTNLMVFLTPHIL 566 >gi|183221062|ref|YP_001839058.1| general secretory pathway protein D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911156|ref|YP_001962711.1| type II secretory pathway protein D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775832|gb|ABZ94133.1| Type II secretory pathway component, protein D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779484|gb|ABZ97782.1| General secretory pathway protein D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 587 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 24/259 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 KK++ +L+ QV L+V I E+ L G + G + A GG + + Sbjct: 303 KKIIKILDTP-RKQVLLEVLIVELSSTDLNDFGIDWRYQELAYGQFNTGLAAQGG-VIDK 360 Query: 242 GGDFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + L FS +L+A L+ P + + Q A G Sbjct: 361 NGRPTNVNTLSGFSLGFIRRGGQQIIGILNANSTNENFNVLSAPQILTLDNQEAEINVGQ 420 Query: 292 QHLYKTVSSSTG-----ATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +T + + G A +V +Y G+ L FTP + RI L + E+ V G+ Sbjct: 421 DVPVRTQNRNAGLGGDNAVTVANFEYRPTGIKLKFTPHINKNNRITLDLYQEIKN-VAGI 479 Query: 344 NA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 ++ G P++ R TT+ + + TIV+ GLL +D Q+ + IP+L +IP+LG LFR Sbjct: 480 SSEATGGNPTFNKRDIKTTIVVDNIQTIVIGGLLSNDKQKKVQKIPILGEIPLLGTLFRR 539 Query: 401 SRFNREETEIFIAATPFLV 419 + +T + + TP ++ Sbjct: 540 TTNQNRKTNLMVFLTPHIL 558 >gi|120609611|ref|YP_969289.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1] gi|120588075|gb|ABM31515.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1] Length = 810 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 18/185 (9%) Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGA------TSVTTHDYGV 314 LE L+ P L + + A G + T S +STG+ T+V D G+ Sbjct: 545 LENTGDANVLSTPNLLTLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVGL 604 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 +L P + G + L + EVS+ G NA + P+ R ++TV + G IVL GL Sbjct: 605 MLRVRPQISENGTVKLSLYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGSVIVLGGL 664 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD-- 431 L+D ++ +PL+ +P++G LFRN R++T + + FL +PV +RD + D Sbjct: 665 LEDRYSMGQDKVPLMGDLPVVGGLFRNENRRRQKTNLMV----FL-RPVVIRDTATSDAL 719 Query: 432 --DHY 434 D Y Sbjct: 720 MMDRY 724 >gi|260428676|ref|ZP_05782654.1| general secretion pathway protein D [Citreicella sp. SE45] gi|260420270|gb|EEX13522.1| general secretion pathway protein D [Citreicella sp. SE45] Length = 320 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 13/237 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDR 253 QV L+ TIAEV + +G + +G + +D V+ G++ +L R Sbjct: 82 QVLLEATIAEVTLNDELNVGVRWYF---QNGDVATRFSDLENGGVA--GNYPGFSAILSR 136 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGA-----TSV 307 L+AL T ++ ++ PTL + Q G Q + + SS A T V Sbjct: 137 GGANVALNALAAVTDVKVISSPTLMVVDNQEGLLQIGDQVPIARQTSSEANADAVVLTQV 196 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGG 366 D G++L P + + G + L+I+ EVS+ +G D P+ RK T L G Sbjct: 197 EYRDTGIILKVRPRIGADGAVNLKIEQEVSDVSATRTSGIDSPTISTRKVSTHAVLADGQ 256 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 T+ L GL+++ + + +P L ++P++G LFR ++ TE+ I P +V A Sbjct: 257 TLTLGGLVQERDNKTRAEVPGLGRVPVVGTLFRAKDNAKDRTELIIMIRPRVVHNAA 313 >gi|319424897|gb|ADV52971.1| MSHA system outer membrane secretin, MshL [Shewanella putrefaciens 200] Length = 559 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 75/270 (27%), Positives = 120/270 (44%), Gaps = 33/270 (12%) Query: 179 SSSKKVMNLLNIAG---EDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSF---A 231 S ++V + LN A + QV L+ I EV Q G Q ++ G + +F A Sbjct: 270 SELRQVRSFLNSAETHLQRQVILEAKILEVTLSDDFQQGIQWENVLGHVGNTNINFGTTA 329 Query: 232 ADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G K S G S+KG F T+++ L+ + L+ P +TA + Q A Sbjct: 330 GTVGNKVTSTLGGVTSLSIKGS----DFTTMINLLDTQGDVDVLSSPRVTASNNQKAVIK 385 Query: 289 SGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ---TE 335 G + T SST G T VTT G+ L TP + G + L + + Sbjct: 386 VGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKDGNVLLHVHPSVID 445 Query: 336 VSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 V E + + + +R++DT + SG +V+ GL+K + ++ +PLL Sbjct: 446 VKEQTKNIKVSNESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENVEVVSQVPLLG 505 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LG LF+N +++TE+ I P +V Sbjct: 506 DIPLLGELFKNRSKQKKKTELIILLKPTVV 535 >gi|289668624|ref|ZP_06489699.1| general secretion pathway protein D [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 760 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 44/309 (14%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----F 215 AV + T L +S + SS + V+ L++ QV ++ IAEV G F Sbjct: 445 AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM-PMQVHIEAQIAEVNLTGELSYGVNWYF 501 Query: 216 QHSIT-----GSSSGPSKSFAA------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 ++++T S GP+ AA D G G ++ G + V++AL+ Sbjct: 502 ENAVTTPFNADGSGGPALPSAAGRNIWGDIAGSVTGNGVGWTFLGK----NAAAVINALD 557 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHF 318 R T +R L P++ + A+ G + + S +TG +SV D GV+L Sbjct: 558 RVTNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKV 617 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY------------RVRKADTTVELPSGG 366 P V G + L I EVS P A + R+ T + SG Sbjct: 618 RPRVTKDGMVFLDIVQEVSTPGARPAACTAATTTTVNSAACNVDINTRRVKTEAAVQSGD 677 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425 T++LAGL+ D G+P LSK+P++GALF + E+ + TP +V+ P R Sbjct: 678 TMMLAGLIDDSTSDGSAGVPFLSKLPVVGALFGQKTRDNTRREVIVLITPSIVRNPQEAR 737 Query: 426 DLSRPDDHY 434 +L+ D Y Sbjct: 738 NLT---DEY 743 >gi|329895109|ref|ZP_08270837.1| General secretion pathway protein D [gamma proteobacterium IMCC3088] gi|328922510|gb|EGG29849.1| General secretion pathway protein D [gamma proteobacterium IMCC3088] Length = 672 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 20/191 (10%) Query: 249 GVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA-- 304 G +D S +L+AL++ + L+ PTL + Q A T G + T ++TG+ Sbjct: 434 GAIDNDLSMTVILNALKKQSNANILSTPTLLTLDNQEAYITVGQNVPFVTGAYTNTGSGG 493 Query: 305 -------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRK 355 ++ + G+ L TP + + L I+ EVS + G++ A D+ + RK Sbjct: 494 SGVQNPFQTIERENVGITLTVTPHINDGDSVVLDIEQEVSS-LTGLSSIASDLITNE-RK 551 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V G T+VL GL+KD++Q + +P+L IP+LG LFRN +T + I Sbjct: 552 IQTKVLAGDGKTVVLGGLIKDNVQDGSQRVPVLGSIPLLGRLFRNDAVEVTKTNLLI--- 608 Query: 416 PFLVKPVAMRD 426 ++P +RD Sbjct: 609 --FIRPTIIRD 617 >gi|312897631|ref|ZP_07757048.1| bacterial type II/III secretion system short domain protein [Megasphaera micronuciformis F0359] gi|310621264|gb|EFQ04807.1| bacterial type II/III secretion system short domain protein [Megasphaera micronuciformis F0359] Length = 372 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 11/163 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--- 312 E LHA LA+P + A +G A G + TG T +Y Sbjct: 204 IEARLHAFVSDGKASILAKPHIMATNGTEARIFIG-DRIPVVTERVTGGERYATTEYKEA 262 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVL 370 G++L +TP + + G + I EV PV D+ +YRV R+ DT V + +G IV+ Sbjct: 263 GILLQYTPYIHTDGTVTANIHGEVGMPVY---VRDLRAYRVATRQVDTQVHIKAGERIVI 319 Query: 371 AGLL-KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 GL+ K++ + L++ +P+L +P++G LFR+ +++ETE+ I Sbjct: 320 GGLIGKEETENLRK-VPILGDLPLIGKLFRSRYRSKKETEVII 361 >gi|238921473|ref|YP_002934988.1| protein transport protein HofQ [Edwardsiella ictaluri 93-146] gi|238871042|gb|ACR70753.1| protein transport protein HofQ [Edwardsiella ictaluri 93-146] Length = 409 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 106/244 (43%), Gaps = 16/244 (6%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD----FGGKFVSEGGDFSVKGV 250 QV L I + ++ L+++G + S SG +S D + S G F V + Sbjct: 171 QVQLAAHIVSISQEGLRELGIRWS-----SGDQRSRGQDTLRGAADAYFSAG--FQVARI 223 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + + L ALER + +A P L A GQ+AS G + Y G +++ Sbjct: 224 GGQ-TLAVALAALERQDKVAIIASPHLMAAHGQTASIKQGSELPYAVSGGERGVSTMEFK 282 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTI 368 + + + TP +L+ RI L +Q + P V GD + + K + T V L G T Sbjct: 283 EAVLGMSVTPRILADARIELALQISQNMPGRVVRQGDSEALAIDKQEITTQVTLADGDTA 342 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAATPFLVKPVAMRD 426 +L G+ + Q G P L+ +P+LG L R + R R E IFI T + R Sbjct: 343 MLGGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSASSLLPRT 402 Query: 427 LSRP 430 L P Sbjct: 403 LRPP 406 >gi|87122896|ref|ZP_01078763.1| type IV pili biogenesis protein PilQ [Marinomonas sp. MED121] gi|86161822|gb|EAQ63120.1| type IV pili biogenesis protein PilQ [Marinomonas sp. MED121] Length = 390 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 11/229 (4%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKFVSEGGDFSVKGVL 251 Q+ + IA+V+ + QIG + G +G + S A+ D + G F+V Sbjct: 166 QIEISARIAQVQNAVESQIGVEWQ--GQLAGDTLSTASGLVDLATTSSTSGLSFAVAKSD 223 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D + L LE ++EP + GQ A SG + Y+T S T V Sbjct: 224 DLLALN--LSFLESNGLANIVSEPKIVTAEGQMAKIESGTEVPYQT--SDDEGTHVEFKQ 279 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G+ L P V ++ L ++ + + +G +PS + +T V + + T+VL Sbjct: 280 AGLTLEVIPFVKQGDKVQLSLK--IYQDAVGEMYNGVPSIETNRINTQVLVGNQETLVLG 337 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G+ +D++ + +P +P +GALFR+ +E+ E+ + TP L++ Sbjct: 338 GIYRDEVWESTSKVPFFGDLPFVGALFRHQAQRQEKVELLVFITPKLLQ 386 >gi|78222195|ref|YP_383942.1| type II and III secretion system secretin [Geobacter metallireducens GS-15] gi|78193450|gb|ABB31217.1| type II and III secretion system protein:NolW-like protein:Secretin/TonB, short-like protein [Geobacter metallireducens GS-15] Length = 870 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 107/240 (44%), Gaps = 16/240 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGG---KFVSEGGDF-- 245 E QV ++ I E + +++G Q I + AD FGG G F Sbjct: 633 EKQVMIEARIVEASSTVTQELGIQWGIHARDANTIGVTNADVGFGGILTGLAPTAGTFGP 692 Query: 246 -SVKGV-----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G+ + S + L AL I+ ++ P + ++ ++A + G Y TVS Sbjct: 693 GAAAGITFGKLISGGSLDLKLSALASGERIKIISSPKVVTLNNKAAKISQGQSIPYSTVS 752 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + T + + L TP + S G I ++I+ + G +P+ ++A T Sbjct: 753 AEGTKTEFV--EAALTLEVTPHIASDGSISMKIKA-TNNSAAPAPTGAVPAINKKEATTE 809 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +G T V+ G+ D+ Q +G+P IP+LG LF++S + + E+ I TP +V Sbjct: 810 LLVRNGETTVIGGIYVDNDSQADQGVPFFKDIPLLGWLFKSSNTQKIKNELLIFITPKIV 869 >gi|146291667|ref|YP_001182091.1| pilus (MSHA type) biogenesis protein MshL [Shewanella putrefaciens CN-32] gi|145563357|gb|ABP74292.1| pilus (MSHA type) biogenesis protein MshL [Shewanella putrefaciens CN-32] Length = 558 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 122/270 (45%), Gaps = 33/270 (12%) Query: 179 SSSKKVMNLLNIAG---EDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSF---A 231 S ++V + LN A + QV L+ I EV Q G Q ++ G + +F A Sbjct: 269 SELRQVRSFLNSAETHLQRQVILEAKILEVTLSDDFQQGIQWENVLGHVGNTNINFGTTA 328 Query: 232 ADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G K S G S+KG F T+++ L+ + L+ P +TA + Q A Sbjct: 329 GTVGNKVTSTLGGVTSLSIKGS----DFTTMINLLDTQGDVDVLSSPRVTASNNQKAVIK 384 Query: 289 SGGQHLYKT-VSSST--GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ---TE 335 G + T VSS+T G T VTT G+ L TP + G + L + + Sbjct: 385 VGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKDGNVLLHVHPSVID 444 Query: 336 VSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 V E + + + +R++DT + SG +V+ GL+K + ++ +PLL Sbjct: 445 VKEQTKNIKVSNESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENVEVVSQVPLLG 504 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LG LF+N +++TE+ I P +V Sbjct: 505 DIPLLGELFKNRSKQKKKTELIILLKPTVV 534 >gi|330963695|gb|EGH63955.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 195 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 16/175 (9%) Query: 44 IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 I KG K ++IG +V+ PVD V+V++P AD+ V SP +Y+FGK GQ ++ Sbjct: 13 IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKAAGQTSL 70 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I + +G++ L + + A + L+ S R+ V+ G ++QD Sbjct: 71 IALDSEGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 127 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 A +L+ LS G+N + +N AG QV ++V AEV R L + G Sbjct: 128 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYG 175 >gi|94312323|ref|YP_585533.1| type II and III secretion system protein [Cupriavidus metallidurans CH34] gi|93356175|gb|ABF10264.1| general secretory pathway component, cryptic [Cupriavidus metallidurans CH34] Length = 783 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 16/191 (8%) Query: 249 GVLDR-FSFETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGGQHLYKTVS 299 GV+++ +LHAL + T++ L+ P L + GQ+ T+G Y Sbjct: 507 GVINKAIGLGALLHALGQNTSVNLLSTPNLITLENEEAKILIGQNIPITTGS---YAQTG 563 Query: 300 SSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRK 355 SST T T D G+ L P + G + ++I E S+ G + P+ VR Sbjct: 564 SSTSVTPFQTFDRKDVGITLRVRPQISEGGLVKMQIYQESSQVAPGTLTNPQGPTTNVRS 623 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +T V + G IVL GL++D+ + +PLL IP LG+LFR R +T + + Sbjct: 624 IETNVLVDDGQIIVLGGLIEDNYGDNVQKVPLLGDIPYLGSLFRYENKTRSKTNLLVFLR 683 Query: 416 PFLVKPVAMRD 426 P++++ D Sbjct: 684 PYVMRTTTATD 694 >gi|226356752|ref|YP_002786492.1| secretin [Deinococcus deserti VCD115] gi|226318742|gb|ACO46738.1| putative Secretin precursor (GSP D family protein) [Deinococcus deserti VCD115] Length = 690 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 39/247 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKG 249 Q+ ++V I E+ + +G + A FGG VS G F Sbjct: 452 QINVQVRIQEITESAARSLGV-------------NLKAGFGGFNVSTGAGGLSAAFDPTQ 498 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ----------------SASFTSGGQH 293 L F+ L+ L+ +++ + T+T SGQ +AS SGG+ Sbjct: 499 SLVGFNLGATLNTLQNQGLSKSIYDGTITMQSGQRALGSTTDAQNASSTAAASIKSGGRL 558 Query: 294 LYKTVSSSTGATSVTTH-DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS- 350 S + ++ DYGV L F +P V G I LR++ +V++ +NA +P+ Sbjct: 559 EINIPSQAANVPAIQRQIDYGVNLDFFSPQVAPDGTITLRVRGQVNDLQTAINASTIPNL 618 Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + +A TT+ +G T++L+GLL G+P LS IP++GALF ++T Sbjct: 619 LQFTNSEAQTTLTFKNGETLLLSGLLATKESSTNSGVPFLSSIPVVGALFGQQTTRSQKT 678 Query: 409 EIFIAAT 415 ++ + T Sbjct: 679 QLLVVIT 685 >gi|120600401|ref|YP_964975.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. W3-18-1] gi|120560494|gb|ABM26421.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. W3-18-1] Length = 558 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 75/270 (27%), Positives = 120/270 (44%), Gaps = 33/270 (12%) Query: 179 SSSKKVMNLLNIAG---EDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSF---A 231 S ++V + LN A + QV L+ I EV Q G Q ++ G + +F A Sbjct: 269 SELRQVRSFLNSAETHLQRQVILEAKILEVTLSDDFQQGIQWENVLGHVGNTNINFGTTA 328 Query: 232 ADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G K S G S+KG F T+++ L+ + L+ P +TA + Q A Sbjct: 329 GTVGNKVTSTLGGVTSLSIKGS----DFTTMINLLDTQGDVDVLSSPRVTASNNQKAVIK 384 Query: 289 SGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ---TE 335 G + T SST G T VTT G+ L TP + G + L + + Sbjct: 385 VGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKDGNVLLHVHPSVID 444 Query: 336 VSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 V E + + + +R++DT + SG +V+ GL+K + ++ +PLL Sbjct: 445 VKEQTKNIKVSNESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENVEVVSQVPLLG 504 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LG LF+N +++TE+ I P +V Sbjct: 505 DIPLLGELFKNRSKQKKKTELIILLKPTVV 534 >gi|297623561|ref|YP_003704995.1| type II and III secretion system protein [Truepera radiovictrix DSM 17093] gi|297164741|gb|ADI14452.1| type II and III secretion system protein [Truepera radiovictrix DSM 17093] Length = 560 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 9/224 (4%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-FAADFGGKFVSEGGDFSVKGVL 251 E Q+ ++V I EV + +++G ++T + S + F+ + G FV F + + Sbjct: 340 ERQINVQVRIQEVSANASERLGL--NLTAAMDRFSTTLFSGEGGLSFV-----FDAQRAI 392 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 F+ +L E R + + +T ++ A+ +GG Y V G + Sbjct: 393 AGFNLGAILDVYEEQGLSRRVDDSNVTVLNNGVATLQAGGTQ-YNYVRDEAGGVTRDEIP 451 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 YGV++ FTP V + + L + V P + G + + RKA++ + L G T+VL Sbjct: 452 YGVIVGFTPQVANNNSVILDLCARVDTPSLRDAEGRITEFLTRKANSRITLQPGQTVVLG 511 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 GLL++ + +P L IP++G LF + TE+ I T Sbjct: 512 GLLQNQVVASNRSVPGLGDIPVVGNLFSTNTATELNTELLIIVT 555 >gi|57169056|ref|ZP_00368183.1| general secretory pathway protein D [Campylobacter coli RM2228] gi|305432265|ref|ZP_07401428.1| general secretory pathway protein D [Campylobacter coli JV20] gi|57019514|gb|EAL56205.1| general secretory pathway protein D [Campylobacter coli RM2228] gi|304444613|gb|EFM37263.1| general secretory pathway protein D [Campylobacter coli JV20] Length = 472 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 16/187 (8%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+ +F+++++ L ++ L+ P L A++ Q A + G Y+ SS G + T Sbjct: 269 GLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKESSKGTENGT 328 Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGD----MPSYR 352 T +Y G++L+ P + G+I LRI +S+ P + P Sbjct: 329 TVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTI 388 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +K + V++ + T++L GL+ + Q + LSKIPILG+LFR+ N TEI Sbjct: 389 QKKLSSVVQVENNQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVF 448 Query: 413 AATPFLV 419 TP +V Sbjct: 449 IITPSIV 455 >gi|94269217|ref|ZP_01291402.1| type II and III secretion system protein:Secretin/TonB, short-like [delta proteobacterium MLMS-1] gi|93451297|gb|EAT02179.1| type II and III secretion system protein:Secretin/TonB, short-like [delta proteobacterium MLMS-1] Length = 557 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 20/198 (10%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSS 300 GG F++ LD SF + L+ + L+ P + + Q A G + T VS Sbjct: 333 GGVFTLATSLDHSSFHAFIELLKTQGDVHVLSSPRVATTNNQKALIKVGNDEYFVTDVSF 392 Query: 301 STGATSVTTHDY----------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AG 346 ST T Y G+ L TPT+ + L I+ VS+ AG Sbjct: 393 STRTTGTDDTIYPDLELTPFFSGIALDVTPTITDGNEVILHIRPSVSQVRDQTKSFTVAG 452 Query: 347 DMPSY-----RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 S R+R++D+ V SG I++ GL++D ++ + G+P L +P++G LFR Sbjct: 453 QTQSLPLALSRMRESDSIVRARSGQVIIIGGLMEDSWREQRAGLPGLGDLPLVGNLFRQQ 512 Query: 402 RFNREETEIFIAATPFLV 419 R+++ +TE+ I P +V Sbjct: 513 RWSQRKTELVILLRPVVV 530 >gi|260774710|ref|ZP_05883614.1| type IV pilus biogenesis protein PilQ [Vibrio coralliilyticus ATCC BAA-450] gi|260609366|gb|EEX35517.1| type IV pilus biogenesis protein PilQ [Vibrio coralliilyticus ATCC BAA-450] Length = 454 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 3/164 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+R + ++ P L + Q A G + Y +SS GATSV + L T Sbjct: 292 LSALQRESRAEVISSPRLITTNKQPAYIEQGTEIPYLEAASS-GATSVNFKKAVLSLKVT 350 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + S R+ L + P V+ G+ + ++ T V + +G TIVL G+ + Sbjct: 351 PQITSDNRLILDLNVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETIVLGGIYQHS 410 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +PLL IP+LG LFR + ++E+ I TP +V P Sbjct: 411 VSDTVDQVPLLGDIPLLGGLFRRTYQQMGKSELLIFVTPTVVAP 454 >gi|330882763|gb|EGH16912.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 215 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 16/176 (9%) Query: 43 EIGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 I KG K ++IG +V+ PVD V+V++P AD+ V SP +Y+FG+ GQ + Sbjct: 19 NIAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGQAAGQTS 76 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 +I + DG++ L + + A + L+ S R+ V+ G ++QD Sbjct: 77 LIALDSDGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVG 133 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 A +L+ LS G+N + +N AG QV ++V AEV R L + G Sbjct: 134 EATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYG 182 >gi|157738059|ref|YP_001490743.1| general secretion pathway protein D [Arcobacter butzleri RM4018] gi|157699913|gb|ABV68073.1| general secretion pathway protein D [Arcobacter butzleri RM4018] Length = 478 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/269 (22%), Positives = 127/269 (47%), Gaps = 36/269 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I EV +++ +IG + I +S S + +++ G G ++K +D Sbjct: 175 QVYVQAKIIEVNNELVNKIGISYGIINASARSDGINAISSNLNG------GSNAIKEAVD 228 Query: 253 ----RFSFETV---------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 R S + L+ L++ A+ ++EP++ AI + +S G + + S Sbjct: 229 TLGIRMSDVNIKSGLALGASLNLLQQNGALDIVSEPSILAIDNKESSIYVGEKISVEISS 288 Query: 300 SSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV 353 + T T+ D G+ L P + S ++ L I T + E + V+AG P Sbjct: 289 TLTDGGLQRTNYEREDIGLTLKVKPRISSDTKLTLEINT-LLEGIKSTSVSAGQNPDTLK 347 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 ++ T L +G ++++ GL+++ + +++ +P+L IP+ G LF+N ++ + I Sbjct: 348 KEIKTAAILNNGESVIIGGLIENKNETIEQKVPVLGDIPLFGELFKNDSKMNKKNNLVII 407 Query: 414 ATPFLV---KPVA-----MRDLSRPDDHY 434 TP+++ K + + +L + +D Y Sbjct: 408 VTPYMIPKSKDITYIREQLSELKKLEDKY 436 >gi|294666157|ref|ZP_06731413.1| general secretion pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604073|gb|EFF47468.1| general secretion pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 763 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 81/308 (26%), Positives = 132/308 (42%), Gaps = 38/308 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 AV + T L +S + SS + V+ L++ QV ++ +AEV G Sbjct: 450 AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM-PMQVHIEAQVAEVNLTGALSYGVNWYF 506 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VLD---RFSF-----ETVLHALERA 266 + + S S FGG + ++ G V D ++F ++ AL+ Sbjct: 507 ENAVNAASDSTTYGFGGAGLPSAAGRNIWGDIAGRVTDGGVAWTFLGKNAAAIISALDTV 566 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTP 320 + +R L P++ + A+ G + + S +TG S +++ D GV+L P Sbjct: 567 SNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSYSSVQYIDTGVILKVRP 626 Query: 321 TVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMP-SYRVRKADTTVELPSGGTI 368 V G + L I E+S P VN+ R+ T + SG T+ Sbjct: 627 RVTKDGMVFLDIVQEISTPGARPAACTAETTTTVNSAACNVDINTRRVKTEAAVQSGDTM 686 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDL 427 +LAGL+ D G+P LSK+PI+GALF N + E+ + TP +V+ P RDL Sbjct: 687 MLAGLIDDSTTDGSVGVPFLSKLPIVGALFGRKTQNTDRREVIVLITPSIVRNPKESRDL 746 Query: 428 SRPDDHYS 435 + D Y+ Sbjct: 747 T---DEYA 751 >gi|222053997|ref|YP_002536359.1| general secretion pathway protein D [Geobacter sp. FRC-32] gi|221563286|gb|ACM19258.1| general secretion pathway protein D [Geobacter sp. FRC-32] Length = 637 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 111/245 (45%), Gaps = 20/245 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------DFGG-----KFVSEGG 243 QV ++ IAEV D +++G Q + G +S + + A FG K + E G Sbjct: 356 QVFVQAMIAEVSIDRARELGVQWGVIGGASNGTVATAGIYDPFGTFGALAPIIKSLGEAG 415 Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--S 300 S + +F +L AL+ A+ L+ P + + A G + T S S Sbjct: 416 IGTSSLNLAGAATFPAILKALQSNGALNVLSTPNIMTSDNKEAEIFVGENVPFLTQSNLS 475 Query: 301 STGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRK 355 STG + D G+ L P V + L I E+S +N G D+ + + R Sbjct: 476 STGLAQQGIERKDTGITLKIKPMVSEGEYVKLDIYQEISAVKDALNKGAAVDITTTK-RS 534 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A T+V + T+V+ GL++D Q+ IP L IP+LG LF+ R +T + I T Sbjct: 535 AKTSVVVKDTDTVVIGGLIQDQDQETINKIPFLGDIPLLGYLFKTKSMKRTKTNLMIILT 594 Query: 416 PFLVK 420 P+++K Sbjct: 595 PYIIK 599 >gi|254524408|ref|ZP_05136463.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14] gi|219721999|gb|EED40524.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14] Length = 792 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 20/214 (9%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVS 299 G ++ GV + + + +AL+ L+ P L + ++AS G + + V+ Sbjct: 458 GTINLPGVGQILNMKALANALQSRGGANILSTPNLMTLDNEAASIMVGQTVPFVSGRYVT 517 Query: 300 SSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--- 351 G + ++ D G+ L P + G + L I EVS ++A S Sbjct: 518 DGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQEVSS----IDAQSASSTAGI 573 Query: 352 --RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R DT+V L G +VL GLL+D + ++ +P L KIP+LGALFR+ R +T Sbjct: 574 ITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPVLGALFRSDTRKRAKTN 633 Query: 410 IFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKA 442 + + P +V+ P A + L+R D Y +A+A Sbjct: 634 LMVFLRPHVVRDPAAGQRLTR--DRYDYMRNAQA 665 >gi|212634883|ref|YP_002311408.1| type II and III secretion system protein:NolW-like protein [Shewanella piezotolerans WP3] gi|212556367|gb|ACJ28821.1| Type II and III secretion system protein:NolW-like protein [Shewanella piezotolerans WP3] Length = 688 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 105/248 (42%), Gaps = 24/248 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSF--AADFGGKFVSEGGD------ 244 QV ++ + V+ D+ + +G + +T + G S S A D + D Sbjct: 438 QVLIEARMVTVKDDVAEDLGVRWGVTDQQGTKGTSGSLEGANDIAAGILPSLNDRLNVNL 497 Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 FSV + D + L ALE+ +A P + S Q A++ G Sbjct: 498 PAAPVNATSIAFSVAKLADGTVLDLELSALEQENKGEIIASPRIMT-SNQKAAYIEQGVE 556 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSY 351 + +SS+GAT+VT + L TP + R+ L I + V+ G+ S Sbjct: 557 IPYVEASSSGATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKVVATPTGEAVSI 616 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ T V + G TIVL G+ + + +PLL IP LG +FR++ E E+ Sbjct: 617 DTQRIGTQVLVDHGETIVLGGIYQQQLISRVSKVPLLGDIPYLGFMFRSTSDKNERQELL 676 Query: 412 IAATPFLV 419 I TP +V Sbjct: 677 IFVTPKIV 684 >gi|303252187|ref|ZP_07338355.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648970|gb|EFL79158.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 190 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 9/148 (6%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 +SG++A GG+ + G SV ++G+ L V RI L + VS Sbjct: 2 LSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDRIRLVLSQSVS-T 59 Query: 340 VIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL-KDDIQQLKEGIPLLSKIPIL 394 + G VN+ +P + R++ +T E+ +G + +++GLL K DI+ +K+ +P+L IPIL Sbjct: 60 IAGNYEIVNS-RIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK-VPVLGDIPIL 117 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422 GA FRN+ +RE E+ + AT LVKPV Sbjct: 118 GAFFRNASSSRESKELVVVATVNLVKPV 145 >gi|55981352|ref|YP_144649.1| general secretion pathway protein PilQ [Thermus thermophilus HB8] gi|55772765|dbj|BAD71206.1| general secretion pathway protein (PilQ) [Thermus thermophilus HB8] Length = 757 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 20/235 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV+L+V I EV+ ++ + +G + +SI G + S D G + F L Sbjct: 533 QVSLRVRIQEVQSNLTRSLGLKWNSIAGGNVAAS---ILDSGLSLI-----FDSTRSLAA 584 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + L AL++ R L + T ++ Q+A SG + V + D G Sbjct: 585 LNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVNDQ--VERVPFDVG 642 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 +++ TP + + G+I L I+ E+S PV GD+ + + TT+ + G T+ Sbjct: 643 LIVEVTPQITADGQILLNIKAEISGNVQRNPV----DGDVDRFTKQVVTTTLRVKDGETV 698 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 VL GL + Q ++G+PLL IP++G LF+ + E+ + T ++K A Sbjct: 699 VLGGLTSQESNQSQQGVPLLMDIPLIGELFKQRTNESTDKELLVVITADILKETA 753 >gi|301058098|ref|ZP_07199150.1| general secretion pathway protein D [delta proteobacterium NaphS2] gi|300447730|gb|EFK11443.1| general secretion pathway protein D [delta proteobacterium NaphS2] Length = 749 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 29/240 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ TIAEV D Q G ++++ ++ + +F A G S G +SV GV +++ Sbjct: 496 QVLIQATIAEVTLDSSTQFGVEYALGHGAAVGNAAFMATLG----SGGLQYSV-GVTNKW 550 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSAS--------FTSGGQHLYKTVSSST--GA 304 E L AL + ++ P + A Q A SG + VSS T Sbjct: 551 YAE--LTALATKGKLNVISSPHVLASDNQEAKIDVSREIPLASGTTN----VSSGTTISE 604 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTT 359 T++ D GV+L TP + G + + + EVS +PV G + P++ R TT Sbjct: 605 TTIEYRDTGVILSVTPHINERGLVTMDVDEEVSNYEGNQPVAG---NEYPTFSKRVVKTT 661 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + G TI + GL++D + G+P L +P++ L + E+ E+ + TP +V Sbjct: 662 LTVGHGQTIAIGGLIRDRENEETRGLPCLVDVPVVKYLTGSWNKETEKIELIVLITPRVV 721 >gi|191174167|ref|ZP_03035680.1| bacterial type II and III secretion system protein [Escherichia coli F11] gi|191174561|ref|ZP_03036057.1| bacterial type II and III secretion system protein [Escherichia coli F11] gi|300972444|ref|ZP_07171951.1| bacterial type II/III secretion system short domain protein [Escherichia coli MS 200-1] gi|190905169|gb|EDV64812.1| bacterial type II and III secretion system protein [Escherichia coli F11] gi|190905585|gb|EDV65211.1| bacterial type II and III secretion system protein [Escherichia coli F11] gi|300309168|gb|EFJ63688.1| bacterial type II/III secretion system short domain protein [Escherichia coli MS 200-1] Length = 421 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 31/243 (12%) Query: 204 EVRRD--ILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVSEGGDFS 246 +V RD +++ + F+ S+ S G SFAA G + GG F Sbjct: 186 DVARDQVLIQSLMFETSL---SDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGSF- 241 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTG 303 G+ D L A++ + + ++ P + SGQ+ + G + K S G Sbjct: 242 --GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGESAG 299 Query: 304 AT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 ++ HD GV L TP V+ G++ L I T A D+ + + R+ TT Sbjct: 300 VNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDIITNQ-RQIQTT 358 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V++ G T++L GL+ + +P++SKIP++G +F + + E+ ++I T ++ Sbjct: 359 VQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKADSNEQRIMYILLTAHII 418 Query: 420 KPV 422 +P+ Sbjct: 419 RPL 421 >gi|194365988|ref|YP_002028598.1| general secretion pathway protein D [Stenotrophomonas maltophilia R551-3] gi|194348792|gb|ACF51915.1| general secretion pathway protein D [Stenotrophomonas maltophilia R551-3] Length = 793 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 20/214 (9%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGGQHL 294 G ++ GV + + + +AL+ L+ P L + GQ+ F SG Sbjct: 459 GTINLPGVGQILNMKALANALQSKGGANILSTPNLMTLDNEAASIMVGQTVPFVSGRYVT 518 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--- 351 S+ ++ D G+ L P + G + L I EVS ++A S Sbjct: 519 DGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQEVSS----IDAQSANSTVGI 574 Query: 352 --RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R DT+V L G +VL GLL+D + ++ +P L KIP+LGALFR+ R +T Sbjct: 575 ITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPVLGALFRSDTRKRAKTN 634 Query: 410 IFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKA 442 + + P +V+ P A + L+R D Y +A+A Sbjct: 635 LMVFLRPHVVRDPAAGQRLTR--DRYDYMRNAQA 666 >gi|307720197|ref|YP_003891337.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] gi|306978290|gb|ADN08325.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] Length = 709 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 114/237 (48%), Gaps = 18/237 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q ++VT+A+V +GF+++IT ++G K+ GG G V V Sbjct: 456 QTLVEVTVADVDMTDTFSLGFEYAITNQNAGLVKNILNITGG-----GSGLGV--VFKGN 508 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATS------ 306 E+ ++A + +++P L ++ ++ + G Q + VS++ +S Sbjct: 509 HLESTINAYAEKKLLDIISKPKLLILNNKTGNINVGTQVPIITSQVSAADLGSSSQPSIN 568 Query: 307 --VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELP 363 ++ + G++L+ TPT+ S G + + I +S+ + + + P R TT + Sbjct: 569 QNISYKNTGIILNITPTINSNGVLTMNISITLSDAQLNDTSTINSPLIINRSLQTTAVVQ 628 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 SG +I+L GL+ + + K G+PLL IP +G +F ++ ++E+ I P ++K Sbjct: 629 SGDSILLGGLISQNKSKSKGGVPLLKDIPWIGNMFASNSIKTTKSELIILIRPVIIK 685 >gi|126176026|ref|YP_001052175.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS155] gi|217971714|ref|YP_002356465.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS223] gi|125999231|gb|ABN63306.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS155] gi|217496849|gb|ACK45042.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS223] Length = 559 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 119/276 (43%), Gaps = 44/276 (15%) Query: 179 SSSKKVMNLLNIAG---EDQVTLKVTIAEV-----------RRDILKQIGFQHSITGSSS 224 S ++V LN A + QV L+ I EV ++L +G + G+S Sbjct: 269 SELRQVRTFLNSAESHLQRQVILEAKIIEVTLSDGYQQGIQWDNVLGHVGNTNVNFGTSK 328 Query: 225 GP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 GP S + GG S+KG F T+++ L+ + L+ P +TA + Sbjct: 329 GPGLSDKITSAIGGV-----TSLSIKGS----DFTTMINLLDTQGDVDVLSSPRVTASNN 379 Query: 283 QSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRI 332 Q A G + T SST G VTT G+ L TP + S G + L + Sbjct: 380 QKAVIKVGTDEYFVTDVSSTTVGGTPPVTTPQVELTPFFSGIALDVTPQIDSDGNVLLHV 439 Query: 333 Q---TEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +V E + D + +R++DT + SG +++ GL+K + ++ Sbjct: 440 HPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAASGDVVIIGGLMKSESIEVVS 499 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP LG LF+N +++TE+ I P +V Sbjct: 500 QVPLLGDIPYLGELFKNRSKQKKKTELIILLKPTVV 535 >gi|213024121|ref|ZP_03338568.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 148 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 2/139 (1%) Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340 Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ + P V Sbjct: 7 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 66 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ Sbjct: 67 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 126 Query: 401 SRFNREETEIFIAATPFLV 419 E E+ + TP LV Sbjct: 127 DGKEDERRELVVFITPRLV 145 >gi|324014333|gb|EGB83552.1| bacterial type II and III secretion system protein [Escherichia coli MS 60-1] Length = 193 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 11/196 (5%) Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G + GG F G+ D L A++ + + ++ P + SGQ+ + G Sbjct: 2 LGSALSTAGGSF---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNV 58 Query: 294 LY---KTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + K S G ++ HD GV L TP V+ G++ L I T A Sbjct: 59 PFITGKVTGESAGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQAS 118 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+ + + R+ TTV++ G T++L GL+ + +P++SKIP++G +F + + E Sbjct: 119 DIITNQ-RQIQTTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKADSNE 177 Query: 407 ETEIFIAATPFLVKPV 422 + ++I T +++P+ Sbjct: 178 QRIMYILLTAHIIRPL 193 >gi|313200626|ref|YP_004039284.1| type II and iii secretion system protein [Methylovorus sp. MP688] gi|312439942|gb|ADQ84048.1| type II and III secretion system protein [Methylovorus sp. MP688] Length = 645 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 103/196 (52%), Gaps = 14/196 (7%) Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYK 296 F S+ G FS+ + L+ L++ T LA P + + + A G + + Sbjct: 392 FNSDLGVFSISDPV------LALNLLQQDTDTNLLANPRIRVKNREKAKIHVGDRIPVLT 445 Query: 297 TVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYR 352 ++++STG + SV+ + G+ L PTVL + +++ EVS I ++G + +Y Sbjct: 446 SIANSTGFVSQSVSYIEVGIKLDVEPTVLLNDEVSIKVGLEVSNQTDKITSSSGTV-TYT 504 Query: 353 V--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R A+T + L +G T VLAGLL+DD Q++ +P L+ +P++G LF + +R + EI Sbjct: 505 IGTRNANTMLRLKNGETQVLAGLLRDDEQKISNKVPGLANLPLIGKLFTDRNTDRTKKEI 564 Query: 411 FIAATPFLVKPVAMRD 426 + TP ++ + D Sbjct: 565 ALLITPRIISNITPAD 580 >gi|325295622|ref|YP_004282136.1| type II and III secretion system protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066070|gb|ADY74077.1| type II and III secretion system protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 506 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 125/270 (46%), Gaps = 38/270 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGS----SSGPSKSFAADFGG 236 K+ ++ +N + QV ++ I EV+ D ++G +T S S G + + + G Sbjct: 238 KEFIDTINGISDRQVLIEAKIVEVKLDKRNELGINWKYLTFSNFLGSGGEYNTISFNSGA 297 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-- 294 EG F + V +F +L L + + L+ P + A++GQ A G +L Sbjct: 298 ---PEGKPFQLSIVKVNNTFSGLLGILSQFGKVNVLSSPRILAMNGQPAMIKVGRDYLAI 354 Query: 295 YKTVSSSTGA----------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 Y+T ++ST + S+ T GVVL P + G I L I +S Sbjct: 355 YRTQTTSTTSTSSQTATTLTTEEVTTNSILTE--GVVLTIIPKIDDKGNIILNISPAISS 412 Query: 339 ---PVIGVNAGDMPSY-------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 P+I + G+ + +R+ +T V + +G T++L GL+ + KEG+P+L Sbjct: 413 LDSPLITGSTGETTDFINKVYSVNIRQLNTVVRVKNGQTVILGGLIAKSKSKEKEGVPIL 472 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFL 418 IP+LG F+++ +TE+ I TP++ Sbjct: 473 QDIPLLGNAFKSTSTISSKTELVIMLTPYV 502 >gi|83858602|ref|ZP_00952124.1| general secretion proteinD [Oceanicaulis alexandrii HTCC2633] gi|83853425|gb|EAP91277.1| general secretion proteinD [Oceanicaulis alexandrii HTCC2633] Length = 658 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 21/191 (10%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT------ 309 E L+ L+ T I ++ P + A+ Q A G Q T S A SVT Sbjct: 459 IEATLNMLDAVTEIEVISRPNVMALHNQQAELQVGDQVPVITQS----AVSVTNPDAPIV 514 Query: 310 -----HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELP 363 D GV+L TP V + G + + I EVS V ++G D P+ R R+ +T+ +P Sbjct: 515 NQTAYRDTGVILSVTPHVRAGGIVEIDITQEVSSVVQTSSSGIDSPTIRQRRITSTLLVP 574 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SG ++ L GL+ + G+P+L ++P++G +F + + + TE+ I L+KP Sbjct: 575 SGQSVALGGLIATTRTTNERGVPVLRELPVVGRVFGSDSESVDRTELVI-----LLKPTV 629 Query: 424 MRDLSRPDDHY 434 + D S+P D + Sbjct: 630 ITDPSQPSDVW 640 >gi|15642863|ref|NP_227904.1| comE protein, putative [Thermotoga maritima MSB8] gi|4980577|gb|AAD35182.1|AE001695_8 comE protein, putative [Thermotoga maritima MSB8] Length = 1285 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P + SG+ A G + Y T ++ G V + G+ L TP V S I L Sbjct: 1138 LASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELD 1197 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + + SEP G ++P R R+A T + + +G TI + GL+++ + +P L + Sbjct: 1198 LFVKASEP--GNYINEVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLPFLGDL 1255 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++G FR N+E+ ++ I T +V+P Sbjct: 1256 PVIGQFFRTKSENKEKRDLVIFLTVRVVEP 1285 >gi|296157578|ref|ZP_06840413.1| general secretion pathway protein D [Burkholderia sp. Ch1-1] gi|295892350|gb|EFG72133.1| general secretion pathway protein D [Burkholderia sp. Ch1-1] Length = 789 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 33/221 (14%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVS 299 F V+G +L AL + L+ P L + + A G Y ++ Sbjct: 491 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSNLT 544 Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYR 352 SST ++ T+D G+ LH P + G + L++ TE S V G P + Sbjct: 545 SSTATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTTNATTNPAGPEFT 604 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +TV +G IVL GL++D+ Q +PLL IP +G LFR+ + R +T + + Sbjct: 605 KRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNKTNLMV 664 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 FL +PV + D A+A NR + I G Sbjct: 665 ----FL-RPVIISD----------RGTAQAVTSNRYDYIQG 690 >gi|190574660|ref|YP_001972505.1| putative general secretion pathway protein D [Stenotrophomonas maltophilia K279a] gi|190012582|emb|CAQ46210.1| putative general secretion pathway protein D [Stenotrophomonas maltophilia K279a] Length = 792 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 16/212 (7%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVS 299 G ++ GV + + + +AL+ L+ P L + ++AS G + + V+ Sbjct: 458 GTINLPGVGQILNMKALANALQSKGGANILSTPNLMTLDNEAASIMVGQTVPFVSGRYVT 517 Query: 300 SSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV- 353 G + ++ D G+ L P + G + L I EVS I + + + + Sbjct: 518 DGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQEVSS--IDAQSANSTAGIIT 575 Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R DT+V L G +VL GLL+D + ++ +P L KIP+LGALFR+ R +T + Sbjct: 576 NKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPVLGALFRSDTRKRAKTNLM 635 Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKA 442 + P +V+ P A + L+R D Y +A+A Sbjct: 636 VFLRPHVVREPAAGQRLTR--DRYDYMRNAQA 665 >gi|170288656|ref|YP_001738894.1| type II and III secretion system protein [Thermotoga sp. RQ2] gi|170176159|gb|ACB09211.1| type II and III secretion system protein [Thermotoga sp. RQ2] Length = 1282 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P + SG+ A G + Y T ++ G V + G+ L TP V S I L Sbjct: 1135 LASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELD 1194 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + + SEP G ++P R R+A T + + +G TI + GL+++ + +P L + Sbjct: 1195 LFVKASEP--GNYINEVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLPFLGDL 1252 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++G FR N+E+ ++ I T +V+P Sbjct: 1253 PVIGQFFRTKSENKEKRDLVIFLTVRVVEP 1282 >gi|46199319|ref|YP_004986.1| competence protein pilQ [Thermus thermophilus HB27] gi|17226359|gb|AAL37751.1|AF436067_5 putative secretin PilQ [Thermus thermophilus HB27] gi|46196944|gb|AAS81359.1| competence protein pilQ [Thermus thermophilus HB27] Length = 757 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 20/235 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L+V I EV+ ++ + +G + +SI G + S D G + F L Sbjct: 533 QVNLRVRIQEVQSNLTRSLGLKWNSIAGGNVAAS---ILDSGLSLI-----FDSTRSLAA 584 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + L AL++ R L + T ++ Q+A SG + V + D G Sbjct: 585 LNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVNDQ--VERVPFDVG 642 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 +++ TP + + G+I L I+ EVS PV GD+ + + TT+ + G T+ Sbjct: 643 LIVEVTPQITADGQILLNIKAEVSGNVQRNPV----DGDVDRFTKQVVTTTLRVKDGETV 698 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 VL GL + Q ++G+PLL IP++G LF+ + E+ + T ++K A Sbjct: 699 VLGGLTSQESNQSQQGVPLLMDIPLIGELFKQRTNESTDKELLVVITADILKEAA 753 >gi|127511146|ref|YP_001092343.1| type IV pilus secretin PilQ [Shewanella loihica PV-4] gi|126636441|gb|ABO22084.1| type IV pilus secretin PilQ [Shewanella loihica PV-4] Length = 683 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 104/248 (41%), Gaps = 24/248 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSF--AADFGGKFVSEGGD------ 244 QV ++ + V+ D+ + +G + IT S G S S A D V + GD Sbjct: 433 QVLIESRMVTVKDDVSEDLGIKWGITDQQGSKGTSGSLEGANDIANGVVPDIGDRLNVNL 492 Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F V + D + L ALE+ + +A P +T S Q A++ G Sbjct: 493 PAAVANPTSIAFHVAKLADGTLLDLELSALEQESKGEIIASPRITT-SNQKAAYIEQGVE 551 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSY 351 + S+S+GA +V + L TP + R+ L I + + G S Sbjct: 552 IPYVESASSGAATVQFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPLGQAVSI 611 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ T V + G TIVL G+ + + +P+L IP LG LFRN+ E E+ Sbjct: 612 DTQRIGTQVLVDHGETIVLGGIYQQQLINRVSKVPVLGDIPFLGYLFRNTTDKNERQELL 671 Query: 412 IAATPFLV 419 I TP ++ Sbjct: 672 IFVTPKII 679 >gi|308272047|emb|CBX28655.1| hypothetical protein N47_G39790 [uncultured Desulfobacterium sp.] Length = 667 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 14/178 (7%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------V 307 + V+ ALE + + LA P + + A+ G Q V+SST ATS + Sbjct: 443 AVRAVVTALESQSRGKLLAAPHILVSDNREATIQVGQQ--VPIVTSSTLATSTQAAQQTI 500 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---VRKADTTVEL-- 362 D G++L P V G + L I+ EVS +A + S + K + + L Sbjct: 501 QYKDIGIILKVKPQVNDSGLVSLEIKQEVSSFSSLSSADTVTSNEDILINKTEVSTNLVV 560 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G TI++ GL+++D + + GIP L KIPILG LF + + TE+ I TP +VK Sbjct: 561 QDGHTIIIGGLIREDKSKSRTGIPWLVKIPILGFLFGGTNDTNKRTELIILLTPHVVK 618 >gi|218782965|ref|YP_002434283.1| general secretion pathway protein D [Desulfatibacillum alkenivorans AK-01] gi|218764349|gb|ACL06815.1| General secretion pathway protein D [Desulfatibacillum alkenivorans AK-01] Length = 716 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 5/176 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGV 314 V+ A + + + L+ P + A + + + G Y T SSS TS D GV Sbjct: 490 VMRAYKNDSDVHILSAPHILATNNEESEIYVGKNVPYVTRQDTSSSSVDYTSYEYRDVGV 549 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L TP + + L + EV+ + P+ RKADTTV + G TIV+ GL+ Sbjct: 550 TLKITPQISQERLVRLDVFQEVTRLIETAGTTTQPTTYKRKADTTVIVKDGNTIVIGGLI 609 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429 + + +P L IP LG FR+ RE+T +++ TP +++ P +++S Sbjct: 610 DESTEGGTYKVPCLGDIPWLGWAFRSKTEKREKTNLYVFLTPRIIQTPTEAKEISE 665 >gi|95929094|ref|ZP_01311839.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] gi|95134995|gb|EAT16649.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] Length = 553 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 25/222 (11%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 GG FS D FE + A++ ++ L+ P ++ ++ Q A G + T SS Sbjct: 338 GGVFSTTLQFD--DFEAFIEAVKSQGDVQVLSSPRISTLNNQKAVIKVGTDEFFVTDISS 395 Query: 302 TGATSVTTHDY----------GVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVN 344 T TT G+ L TP + GR+ L + VSE V + Sbjct: 396 DTVTGTTTTTTPDITLTPFFSGIALDVTPQISGQGRVTLHVHPTVSEVVDQTKVITVAGQ 455 Query: 345 AGDMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 A +P VR++DT VE SG +V+ GL+K+ + G+PLL IP LG LFR+ + Sbjct: 456 AQSLPLAFSSVRESDTIVEARSGQVVVIGGLMKNSDTREGAGVPLLGDIPGLGHLFRHQK 515 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 + ++E+ I P +V+ RD +D + + F Sbjct: 516 NSTSKSELIILLKPLVVE----RDTDWNNDIEAARQRMNSLF 553 >gi|300718766|ref|YP_003743569.1| secretion and pilus transport protein [Erwinia billingiae Eb661] gi|299064602|emb|CAX61722.1| secretion and pilus transport protein [Erwinia billingiae Eb661] Length = 388 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 5/232 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +Q+ L I + + L+++G + T + + F + L R Sbjct: 155 EQIELAAHIVTINEESLRELGVRWGTTSNEQITQALRTSQFTVSLPVADAALTAGFTLAR 214 Query: 254 FS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + L ALE+ + +A P L Q AS G + Y+ S ++G T+V Sbjct: 215 LDGKLLDLELSALEQENKLEIIASPRLFTSHQQPASIKQGTEIPYEVSSGTSGTTTVEFK 274 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTI 368 + + + TP V + GRI L++Q + P + +G+ + K + T V L G T+ Sbjct: 275 EAVLGMEVTPVVQANGRILLKLQLTQNVPGRTMRSGEGEYLAIDKQEIQTQVTLKDGQTL 334 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G+ + + +PL+ IPILG+LFR ++ E+ I TP L++ Sbjct: 335 ALGGIFQRSTASGQRKVPLIGDIPILGSLFRYDINEQKRRELVIFITPRLIR 386 >gi|253998552|ref|YP_003050615.1| type II and III secretion system protein [Methylovorus sp. SIP3-4] gi|253985231|gb|ACT50088.1| type II and III secretion system protein [Methylovorus sp. SIP3-4] Length = 650 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 94/167 (56%), Gaps = 8/167 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVL 316 L+ L++ T LA P + + + A G + + ++++STG + SV+ + G+ L Sbjct: 408 LNLLQQDTDTNLLANPRIRVKNREKAKIHVGDRIPVLTSIANSTGFVSQSVSYIEVGIKL 467 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAG 372 PT+L + +++ EVS I ++G + +Y + R A+T + L +G T VLAG Sbjct: 468 DVEPTILLNDDVSIKVGLEVSNQTDKITSSSGTV-TYTIGTRNANTILRLKNGETQVLAG 526 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 LL+DD Q++ +P L+K+P++G LF + +R + EI + TP +V Sbjct: 527 LLRDDEQKISNRVPGLAKLPLIGKLFTDRSTDRTKKEIALLITPRIV 573 >gi|281412148|ref|YP_003346227.1| type II and III secretion system protein [Thermotoga naphthophila RKU-10] gi|281373251|gb|ADA66813.1| type II and III secretion system protein [Thermotoga naphthophila RKU-10] Length = 1282 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P + SG+ A G + Y T ++ G V + G+ L TP V S I L Sbjct: 1135 LASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELD 1194 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + + SEP G ++P R R+A T + + +G TI + GL+++ + +P L + Sbjct: 1195 LFVKASEP--GNYINEVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLPFLGDL 1252 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++G FR N+E+ ++ I T +V+P Sbjct: 1253 PVIGQFFRTKSENKEKRDLVIFLTVKVVEP 1282 >gi|297570326|ref|YP_003691670.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] gi|296926241|gb|ADH87051.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] Length = 514 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 21/240 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKG 249 QV ++ I E +++ +++G Q S + +D G F + G+ +S+ Sbjct: 261 QVLIEAHIIETNQEVARELGVQWG----SFWRGQQRVSDAAGGFTYQAGNPIGEQYSLDV 316 Query: 250 VLDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + F E L AL+R + L+ P++ + A SG + Y+++ Sbjct: 317 LTGEVGFYTASVAGNILEMQLQALQREGKVNILSRPSVATLDNHEAVLESGTEVPYQSIE 376 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 G TSV D + L TP V+S I L+I+ + E + P + A T Sbjct: 377 D--GTTSVQYKDAVLRLLVTPQVISRENIKLKIEAQKDEVDLTRTVMGNPFIIKKLAQTN 434 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + G T+V+AGL K+ G+PLL IP LG FR+ E E+ I TP ++ Sbjct: 435 LIVEDGSTVVIAGLAKERQASSSTGVPLLKNIPGLGVFFRSDARAGEFEELLIFITPRIL 494 >gi|241763436|ref|ZP_04761490.1| general secretion pathway protein D [Acidovorax delafieldii 2AN] gi|241367378|gb|EER61699.1| general secretion pathway protein D [Acidovorax delafieldii 2AN] Length = 697 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 114/239 (47%), Gaps = 21/239 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGG-DFSVKGVLD 252 QV ++ +I EV + G Q + + + GP S GG +++K L Sbjct: 422 QVLIEASIIEVTLGDDLKYGLQWAFSDTHRGGPGSGLIGAL--PSASTGGFSYTLKDTLG 479 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVT 308 + L+AL + I+ ++ P+L + Q+A+ G Q +T ++ G ++ T Sbjct: 480 --NMRVTLNALAAKSLIKVISSPSLMVLDNQTATIAVGTQQPIRTGETTNLNTVGNSTTT 537 Query: 309 THDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVE 361 T+ Y GV L P+V S G + ++S+ V V D ++ R+ + V Sbjct: 538 TYQYKDTGVQLSVQPSVNS----GDLVTMDISQAVTDVGDEDTVTGQRAFLQRQISSKVA 593 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + SG +VL GL+KD+ + G+PLLS +P++G LF + + TE+ + TP +V+ Sbjct: 594 VRSGEAVVLGGLIKDNSSSGRSGVPLLSSLPVVGGLFGATTSSSGRTELLVVITPKVVR 652 >gi|167625988|ref|YP_001676282.1| type IV pilus secretin PilQ [Shewanella halifaxensis HAW-EB4] gi|167356010|gb|ABZ78623.1| type IV pilus secretin PilQ [Shewanella halifaxensis HAW-EB4] Length = 688 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 102/248 (41%), Gaps = 24/248 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSF--AADFGGKFVSEGGD------ 244 QV ++ + V+ D+ + +G + +T G S S A D V D Sbjct: 438 QVLIEARMVTVKDDVSEDLGVRWGVTDQQGDKGTSGSLEGAGDIANGIVPSLSDRLNVNL 497 Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F V + D + L ALE+ +A P +T S Q A++ G Sbjct: 498 PAAVANPTSIAFHVAKLADGTVLDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVE 556 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSY 351 + +SS+GAT+VT + L TP + R+ L I + + G S Sbjct: 557 IPYVEASSSGATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGQAVSI 616 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ T V + G TIVL G+ + + +P+L IP LG +FRNS E E+ Sbjct: 617 DTQRIGTQVLVDHGETIVLGGIYQQQLITKVSKVPILGDIPYLGFMFRNSSDKNERQELL 676 Query: 412 IAATPFLV 419 I TP +V Sbjct: 677 IFVTPKIV 684 >gi|325124244|gb|ADY83767.1| putative general secretion pathway protein [Acinetobacter calcoaceticus PHEA-2] Length = 756 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 18/211 (8%) Query: 219 ITGSSSGPSKSFAADFG---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 +TG +SG + A GK+ EG D S R + ++ AL+ TA L+ P Sbjct: 445 LTGGASGLGSAIGAGSSIALGKY-KEGADGS------RQLYGALIQALKENTASNLLSTP 497 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIG 329 ++ + + A G + T S +T +T + + D GV L P + G + Sbjct: 498 SIVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGENGTVR 557 Query: 330 LRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS A D+ + + R T V G T+VL GL+ DD++ ++GIP L Sbjct: 558 LEIEQEVSNVQASKGQAADLITNK-RAIKTAVLAEHGQTVVLGGLVSDDVEFNRQGIPGL 616 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 S IP LG LFR+ + + + + P +V Sbjct: 617 SSIPYLGRLFRSDTRSNVKRNLLVFIHPTIV 647 >gi|304412646|ref|ZP_07394250.1| general secretion pathway protein D [Shewanella baltica OS183] gi|307307256|ref|ZP_07586993.1| general secretion pathway protein D [Shewanella baltica BA175] gi|304348990|gb|EFM13404.1| general secretion pathway protein D [Shewanella baltica OS183] gi|306910311|gb|EFN40743.1| general secretion pathway protein D [Shewanella baltica BA175] Length = 704 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 12/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310 F ++ A+ T LA P++T + Q ASF G + T S+++ + S V Sbjct: 447 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERK 506 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + GV L P + + L I+ EVS + N G S+ R+ TTV SG +VL Sbjct: 507 EVGVKLKVVPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 564 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ +++Q+ + +P L IPI+G LF++S + + + I +KP +RD Sbjct: 565 GGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 615 >gi|257485212|ref|ZP_05639253.1| general secretion pathway protein GspD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 619 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 107/252 (42%), Gaps = 27/252 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKFV 239 QV ++ I EV D Q G Q TG+ +G S S + D + Sbjct: 302 QVVIESLIVEVSEDDANQFGVQWQ-TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGL 360 Query: 240 SEG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G G ++ G+ + + + AL+ L+ P L + ++AS G + Sbjct: 361 NVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 420 Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 T S TG +V + G+ L+ P + G + L I EVS + Sbjct: 421 TGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASG 480 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R DT++ L G +VL GLL+D Q E +P LS+IP+LG LFRN + +T Sbjct: 481 TVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKT 540 Query: 409 EIFIAATPFLVK 420 + + P++++ Sbjct: 541 NLMVFLRPYIIR 552 >gi|152998702|ref|YP_001364383.1| general secretion pathway protein D [Shewanella baltica OS185] gi|151363320|gb|ABS06320.1| general secretion pathway protein D [Shewanella baltica OS185] Length = 704 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 12/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310 F ++ A+ T LA P++T + Q ASF G + T S+++ S V Sbjct: 447 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERK 506 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + GV L P + + L I+ EVS + N G S+ R+ TTV SG +VL Sbjct: 507 EVGVKLKVVPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 564 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ +++Q+ + +P L IPILG LF++S + + + I +KP +RD Sbjct: 565 GGLINEEVQESVQKVPFLGDIPILGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 615 >gi|320328774|gb|EFW84773.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. race 4] Length = 778 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 27/252 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248 QV ++ I EV D Q G Q TG+ +G + GG ++ GG S+ Sbjct: 461 QVVIESLIVEVSEDDANQFGVQWQ-TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGL 519 Query: 249 ------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G+ + + + AL+ L+ P L + ++AS G + Sbjct: 520 NVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 579 Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 T S TG +V + G+ L+ P + G + L I EVS + Sbjct: 580 TGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASG 639 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R DT++ L G +VL GLL+D Q E +P LS+IP+LG LFRN + +T Sbjct: 640 TVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKT 699 Query: 409 EIFIAATPFLVK 420 + + P++++ Sbjct: 700 NLMVFLRPYIIR 711 >gi|320324664|gb|EFW80738.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. B076] Length = 778 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 27/252 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248 QV ++ I EV D Q G Q TG+ +G + GG ++ GG S+ Sbjct: 461 QVVIESLIVEVSEDDANQFGVQWQ-TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGL 519 Query: 249 ------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G+ + + + AL+ L+ P L + ++AS G + Sbjct: 520 NVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 579 Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 T S TG +V + G+ L+ P + G + L I EVS + Sbjct: 580 TGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASG 639 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R DT++ L G +VL GLL+D Q E +P LS+IP+LG LFRN + +T Sbjct: 640 TVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKT 699 Query: 409 EIFIAATPFLVK 420 + + P++++ Sbjct: 700 NLMVFLRPYIIR 711 >gi|169634604|ref|YP_001708340.1| putative general secretion pathway protein [Acinetobacter baumannii SDF] gi|260556356|ref|ZP_05828575.1| general secretion pathway protein D [Acinetobacter baumannii ATCC 19606] gi|169153396|emb|CAP02525.1| putative general secretion pathway protein [Acinetobacter baumannii] gi|260410411|gb|EEX03710.1| general secretion pathway protein D [Acinetobacter baumannii ATCC 19606] Length = 756 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 96/206 (46%), Gaps = 18/206 (8%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 GS+ G S A GK+ EG D S R + ++ AL+ TA L+ P++ + Sbjct: 453 GSAIGAGSSIAL---GKY-KEGADGS------RQLYGALIQALKENTASNLLSTPSIVTM 502 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQT 334 + A G + T S +T +T + + D GV L P + G + L I+ Sbjct: 503 DNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGENGTVRLEIEQ 562 Query: 335 EVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 EVS A D+ + + R T V G T+VL GL+ DD++ ++GIP LS IP Sbjct: 563 EVSNVQASKGQAADLITNK-RAIKTAVLAEHGQTVVLGGLVSDDVEFNRQGIPGLSSIPY 621 Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419 LG LFR+ + + + + P +V Sbjct: 622 LGRLFRSDTRSNTKRNLLVFIHPTIV 647 >gi|71735614|ref|YP_274395.1| general secretion pathway protein GspD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556167|gb|AAZ35378.1| general secretion pathway protein GspD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 778 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 27/252 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248 QV ++ I EV D Q G Q TG+ +G + GG ++ GG S+ Sbjct: 461 QVVIESLIVEVSEDDANQFGVQWQ-TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGL 519 Query: 249 ------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G+ + + + AL+ L+ P L + ++AS G + Sbjct: 520 NVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 579 Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 T S TG +V + G+ L+ P + G + L I EVS + Sbjct: 580 TGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASG 639 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R DT++ L G +VL GLL+D Q E +P LS+IP+LG LFRN + +T Sbjct: 640 TVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKT 699 Query: 409 EIFIAATPFLVK 420 + + P++++ Sbjct: 700 NLMVFLRPYIIR 711 >gi|94500410|ref|ZP_01306942.1| type 4 fimbrial biogenesis protein PilQ [Oceanobacter sp. RED65] gi|94427445|gb|EAT12423.1| type 4 fimbrial biogenesis protein PilQ [Oceanobacter sp. RED65] Length = 696 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 5/172 (2%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D + + L ALE +++P + GQ+A +G + Y+ S+S GATS+ + Sbjct: 525 DEYVLDLELSALESDGKAEIISQPRVITADGQTARIQAGTEIPYEQASAS-GATSIVFKE 583 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + L TP + RI + + +++ +G +PS + +T V + +G TIVL Sbjct: 584 AVLKLEATPQITPDDRILMDLI--INKDAVGEIFNSIPSIDTNELETQVLVNNGETIVLG 641 Query: 372 GLLK-DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G+ + +DI Q+ + P +P++G LFR + +++E+ I TP LVK V Sbjct: 642 GIFQSEDITQVDK-TPFFGDLPVIGQLFRRTTRTEDKSELLIFITPRLVKDV 692 >gi|114561562|ref|YP_749075.1| type IV pilus secretin PilQ [Shewanella frigidimarina NCIMB 400] gi|114332855|gb|ABI70237.1| type IV pilus secretin PilQ [Shewanella frigidimarina NCIMB 400] Length = 682 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ +A P +T S Q +++ G + S+S+GA Sbjct: 503 FHVAKLADGTVLDLELSALEQENKGEIIASPRITT-SNQKSAYIEQGVEIPYVESASSGA 561 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 T+VT + L TP + R+ L I + + G+ + ++ T V + Sbjct: 562 TTVTFKKAVLSLRVTPQITPDDRVILDLEITQDSQGTTVATATGEAVAIDTQRIGTQVLV 621 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G TIVL G+ + ++ +P+L IP++G LFRNS E E+ I TP +V Sbjct: 622 DNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNSTDTNERQELLIFVTPKIV 678 >gi|295678175|ref|YP_003606699.1| general secretion pathway protein D [Burkholderia sp. CCGE1002] gi|295438018|gb|ADG17188.1| general secretion pathway protein D [Burkholderia sp. CCGE1002] Length = 811 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 93/221 (42%), Gaps = 33/221 (14%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301 F V+G +L AL + L+ P L + + A G +T S S Sbjct: 495 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIIVGTNVPIQTGSYSNLT 548 Query: 302 TGATSVTTH-----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYR 352 +G TS + D G+ LH P + G + L + TE S V G N P + Sbjct: 549 SGTTSAAFNTFDRVDVGLTLHVKPQITDGGILKLLLYTEDSAIVNGTNNAATNPAGPEFT 608 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +TV +G IVL GL++D+ Q +PLL IP LG LFR+ + R +T + + Sbjct: 609 KRSIQSTVLCDNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWLGQLFRSEQKTRNKTNLMV 668 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 ++PV + D D +A NR + I G Sbjct: 669 -----FLRPVILAD----------RDTTQAVTANRYDYIQG 694 >gi|319761377|ref|YP_004125314.1| general secretion pathway protein d [Alicycliphilus denitrificans BC] gi|317115938|gb|ADU98426.1| general secretion pathway protein D [Alicycliphilus denitrificans BC] Length = 767 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 19/279 (6%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L G VR + D +R L ++ R +Y ++ + L+ A QV ++ +I EV Sbjct: 449 LEGNVRVVADDKR-----NALLIRAPRAEY--RRIEQALRELDKA-PTQVLIEASIVEVS 500 Query: 207 RDILKQIG----FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 + G Q+S++G +G + + G + FS + + L+A Sbjct: 501 LTGNLKYGVEWFIQNSLSGDRTGQAL-LNMNNSGSIGPQQPGFSYTILNKAGAVRATLNA 559 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----HDYGVVLHF 318 L + +R L+ P++ + SA+ G Q K ++ T VT D GV+L Sbjct: 560 LAANSQLRVLSNPSVLVLDNHSATILVGKQQPIKQSTTVTTGNLVTESIVYKDTGVMLSV 619 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP+V + G + L I +V++ V V+A S+ R+ + V + SG IVL G++ ++ Sbjct: 620 TPSVNAGGLVTLDINQQVTD-VGDVDAATGQRSFLTRQIQSRVAVRSGDPIVLGGVMSEN 678 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 G+P L +P+LGALF TE+ + TP Sbjct: 679 QSTGNSGVPGLRDVPVLGALFSTDTTTSARTELLVVLTP 717 >gi|160873279|ref|YP_001552595.1| general secretion pathway protein D [Shewanella baltica OS195] gi|160858801|gb|ABX47335.1| general secretion pathway protein D [Shewanella baltica OS195] gi|315265506|gb|ADT92359.1| general secretion pathway protein D [Shewanella baltica OS678] Length = 705 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 12/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310 F ++ A+ T LA P++T + Q ASF G + T S+++ + S V Sbjct: 448 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERK 507 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + GV L P + + L I+ EVS + N G S+ R+ TTV SG +VL Sbjct: 508 EVGVKLKVVPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 565 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ +++Q+ + +P L IPI+G LF++S + + + I +KP +RD Sbjct: 566 GGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 616 >gi|91785777|ref|YP_560983.1| putative general secretory pathway protein D [Burkholderia xenovorans LB400] gi|91689731|gb|ABE32931.1| Putative general secretory pathway protein D [Burkholderia xenovorans LB400] Length = 814 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 33/221 (14%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVS 299 F V+G +L AL + L+ P L + + A G Y ++ Sbjct: 516 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSNLT 569 Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYR 352 SST ++ T+D G+ LH P + G + L++ TE S V G P + Sbjct: 570 SSTATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTTNATTNPAGPEFT 629 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +TV +G IVL GL++D+ Q +PLL IP +G LFR+ + R +T + + Sbjct: 630 KRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNKTNLMV 689 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 FL +PV + D A+A NR + I G Sbjct: 690 ----FL-RPVIISD----------RGTAQAVTSNRYDYIQG 715 >gi|326572695|gb|EGE22682.1| general secretion pathway protein D [Moraxella catarrhalis BC8] Length = 428 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 38/249 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------PSKSFAADFGGKFVSEGGDFSV 247 Q+ ++ I E+ K +G Q + G+ +G P+ S G SV Sbjct: 160 QILIQAVILELSDTDTKNLGVQWA-AGNGAGYGVVNFNPAVSLTNALAG-----NKSLSV 213 Query: 248 KGVL--------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G L ++F + VLHALE + L+ P++ ++ ++AS G + + Sbjct: 214 LGALFGYKKNDGNKF-YGAVLHALEHTSNANLLSMPSVLSLDNEAASILIG-----QNIP 267 Query: 300 SSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 TG+ +++ D G+ L TP + RI +++ EVS V N G + + Sbjct: 268 VITGSQLDRNGEPFKTISRLDVGISLKVTPQITDDNRINMKVYQEVSNVVNTTNDGVVTN 327 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 V DT + +G IVL GL++D+ +G+P LSK+P LG F+ + +++ + Sbjct: 328 KSV--IDTNILSGNGEVIVLGGLMRDETTTTVQGVPKLSKLPFLGKAFKADLDSAKKSNL 385 Query: 411 FIAATPFLV 419 I P ++ Sbjct: 386 VIFLQPTII 394 >gi|149909433|ref|ZP_01898088.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Moritella sp. PE36] gi|149807543|gb|EDM67492.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Moritella sp. PE36] Length = 747 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + G+ + + L ALE +A P +T +SA G + Y SSS+GA Sbjct: 568 FQIAGLANGQILDLELSALEAEQKAEVIASPRITTTDKKSAYIEQGTEIPY-VESSSSGA 626 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 T++ + L TP + +I L+I + + G+ S + T V + Sbjct: 627 TTIAFKKAVLGLWVTPHITPDNKIILDLKINQDTRGEDVKTVGGEAVSIDTQVISTQVLV 686 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G TIVL G+ K +I+Q+ +P+L IP LG LFR+++ ++ E+ I TP +V Sbjct: 687 ENGETIVLGGIFKHEIKQIVTKVPILGDIPWLGVLFRSTKNISQKRELLIFVTPKVV 743 >gi|332531032|ref|ZP_08406951.1| type II and III secretion system protein [Hylemonella gracilis ATCC 19624] gi|332039513|gb|EGI75920.1| type II and III secretion system protein [Hylemonella gracilis ATCC 19624] Length = 740 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 13/207 (6%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 +G + P F A G V G + GVL RF + + + TL Sbjct: 465 SGQPAAPGAGFTAGVG---VQRGNNGVALGVLARFLETNRMGNVLSTPNLMTLDNEEAKI 521 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + GQ+ F +G Y +SS+GA ++ D G+ L P + G + + I E Sbjct: 522 VIGQNVPFVTG---QYTANNSSSGAVNPFQTIERRDVGLTLAVRPQISENGTVKMVISQE 578 Query: 336 VS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 VS +P +A + + + R DT+V + G IVL GLL+D+ +E +P L IP Sbjct: 579 VSSVDPTSLTSAAGLRTSK-RSIDTSVLVDDGAIIVLGGLLQDESSVSEEKVPGLGSIPG 637 Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420 LG LFR+ +R++T + + P +V+ Sbjct: 638 LGWLFRSESGSRKKTNLMVFLRPVIVR 664 >gi|91794695|ref|YP_564346.1| type II and III secretion system protein [Shewanella denitrificans OS217] gi|91716697|gb|ABE56623.1| type II and III secretion system protein [Shewanella denitrificans OS217] Length = 549 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 31/234 (13%) Query: 221 GSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 G++ GP S S + GG SVK F T++ L+ + L+ P +T Sbjct: 315 GTAKGPNLSNSITSVLGGV-----TSLSVKNT----DFSTMISLLDTQGDVDVLSSPRVT 365 Query: 279 AISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRI 328 A + Q A G + T SST G +TT + G+ L TP + S G + Sbjct: 366 ASNNQKAVIKVGNDEYFVTKVSSTTVTGTNPITTPEVELTPFFSGIALDVTPQIDSEGNV 425 Query: 329 GLRIQT---EVSEPV----IGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 L + +V+E + I ++ ++P +R++DT + SG +++ GL+K D Sbjct: 426 LLHVHPSVIKVTEQIKDIQINGSSSELPLAQSEIRESDTVIRAASGDVVIIGGLMKSDNV 485 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDD 432 ++ +PLL IP+LG +F N ++TE+ I P +V R +L R D Sbjct: 486 EMVSKVPLLGDIPLLGEIFTNRSKQMKKTELIIMLKPTVVGVDTWREELKRSKD 539 >gi|126176391|ref|YP_001052540.1| general secretion pathway protein D [Shewanella baltica OS155] gi|125999596|gb|ABN63671.1| general secretion pathway protein D [Shewanella baltica OS155] Length = 705 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 12/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310 F ++ A+ T LA P++T + Q ASF G + T S+++ + S V Sbjct: 448 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERK 507 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + GV L P + + L I+ EVS + N G S+ R+ TTV SG +VL Sbjct: 508 EVGVKLKVVPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 565 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ +++Q+ + +P L IPI+G LF++S + + + I +KP +RD Sbjct: 566 GGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 616 >gi|85705572|ref|ZP_01036670.1| type II and III secretion system protein [Roseovarius sp. 217] gi|85669997|gb|EAQ24860.1| type II and III secretion system protein [Roseovarius sp. 217] Length = 441 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 167/393 (42%), Gaps = 51/393 (12%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107 +++++ K I+L V +V V VSD T AD + S +++FGK VG+ ++I Sbjct: 34 ERLTVEQGKSILLPVGDNVDTVFVSDTTVADASISSNNRVFVFGKEVGETSLIATSTYAD 93 Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +++ ++ + ++ I VE ++++ G+V S R E T Sbjct: 94 SDMTFTVVVTHKLSEIRSVIQSRFPGEQIAVESSRGSLMITGIV----SSDRVRETLVTT 149 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 L + + +++ L +A + + L+V + EV R ++ G + T +++G Sbjct: 150 LESA-------APETTIIDRLRVASSNIIRLEVKLLEVSRTQVENFGIDWNATVTANG-- 200 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA------TAIRTLAEPT-LTAI 280 F G S +GVL +T +L A I T+A+ T L+ + Sbjct: 201 -----FFLGT--------SNRGVLSVGKSDTAESSLNAALDVLISNGIATIAQETVLSTV 247 Query: 281 SGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +G+ A F+ GG+ T SS G + G L FTP++ ++ L I + Sbjct: 248 NGEEALFSVGGEIPIPTFIPVDSGSSDGNFQLDFKFIGTSLSFTPSIAPGNKLRLLIDST 307 Query: 336 VS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI-----QQLKEGIPL 387 +S + VN P+ R T VEL V+AG+ ++D Q G Sbjct: 308 ISSQGQTSSTVNGNVFPNLNTRSFRTNVELSDRQPFVIAGVTRNDTSNDLRQDRGTG--- 364 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 LS+ I+ +L R E+ + TP L + Sbjct: 365 LSR--IVDSLLGQDRVTANSQELVVIVTPLLTE 395 >gi|24371883|ref|NP_715925.1| type IV pilus biogenesis protein PilQ [Shewanella oneidensis MR-1] gi|24345706|gb|AAN53370.1|AE015476_11 type IV pilus biogenesis protein PilQ [Shewanella oneidensis MR-1] Length = 684 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ +A P +T S Q A++ G + S+S+GA Sbjct: 505 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 563 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSVT + L TP + R+ L I + + G + ++ T V + Sbjct: 564 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 623 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V Sbjct: 624 DNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680 >gi|217971366|ref|YP_002356117.1| general secretion pathway protein D [Shewanella baltica OS223] gi|217496501|gb|ACK44694.1| general secretion pathway protein D [Shewanella baltica OS223] Length = 706 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 12/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310 F ++ A+ T LA P++T + Q ASF G + T S+++ + S V Sbjct: 449 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERK 508 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + GV L P + + L I+ EVS + N G S+ R+ TTV SG +VL Sbjct: 509 EVGVKLKVVPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 566 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ +++Q+ + +P L IPI+G LF++S + + + I +KP +RD Sbjct: 567 GGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 617 >gi|83943483|ref|ZP_00955942.1| general secretion pathway protein D [Sulfitobacter sp. EE-36] gi|83845715|gb|EAP83593.1| general secretion pathway protein D [Sulfitobacter sp. EE-36] Length = 631 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 117/254 (46%), Gaps = 36/254 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ I EV ++ +++G Q + GP+ A F S GG S+ VL Sbjct: 341 QVMIEAAIVEVSGEVAERLGVQLGL-----GPNVPNGAIAASNF-SNGGGVSLGSVLAAV 394 Query: 255 S-------------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 F ++ AL ++T+ R L+ P++T + + A+ G + Sbjct: 395 GVPAGSALSTGLTLGAGGNDFGILVQALSQSTSARLLSTPSVTTLDNEPATIVVGQNVPF 454 Query: 296 KTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AG 346 +T S ++T T++ D G+ ++ P + + G + L I+ E+S + N A Sbjct: 455 RTGSFATDGNTATPFTTIERRDVGITMNVVPRITAGGVVQLVIEQEISS-LTNANVEGAA 513 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+ + R R +TTV + GT+VL GL+ DD +P L +P++G LF++ Sbjct: 514 DLVTNR-RVINTTVMADNRGTVVLGGLITDDRINGSSKVPGLGDLPVVGELFKSRNARNT 572 Query: 407 ETEIFIAATPFLVK 420 + +F+ P +++ Sbjct: 573 QRTLFVFLRPTILR 586 >gi|294625731|ref|ZP_06704351.1| general secretion pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599967|gb|EFF44084.1| general secretion pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 763 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 84/314 (26%), Positives = 135/314 (42%), Gaps = 57/314 (18%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----F 215 AV + T L +S + SS + V+ L++ QV ++ +AEV Q G F Sbjct: 451 AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM-PMQVHIEAQVAEVNLTGELQYGVNWYF 507 Query: 216 QHSITGSS--------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 ++++ ++ S +S D G + G ++ G + V+ AL+ T Sbjct: 508 ENAVNAATAAGGAGLPSAAGRSIWGDISGTVTNGGVGWTFLGK----NAAAVISALDTVT 563 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPT 321 +R L P++ + A+ G + + S +TG +SV D GV+L P Sbjct: 564 NLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPR 623 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSY------------------RVRKADTTVELP 363 V G + L I E+S P G P R+ T + Sbjct: 624 VTKDGMVFLDIVQEISTP------GARPQACTAAATTTVNSAACNVDINTRRVKTEAAVQ 677 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLVK- 420 SG T++LAGL+ D + G+P LSK+P++GALF +N NR E + I TP +V+ Sbjct: 678 SGDTMMLAGLIDDSTTDISAGVPFLSKLPVVGALFGQKNKDTNRREVIVLI--TPTIVRN 735 Query: 421 PVAMRDLSRPDDHY 434 P R+L+ D Y Sbjct: 736 PQEARNLT---DEY 746 >gi|148269971|ref|YP_001244431.1| type II and III secretion system protein [Thermotoga petrophila RKU-1] gi|147735515|gb|ABQ46855.1| type II and III secretion system protein [Thermotoga petrophila RKU-1] Length = 1282 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P + SG+ A G + Y T ++ G V + G+ L+ TP V S I L Sbjct: 1135 LASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELNITPFVRSDDTIELD 1194 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + + SEP G ++P R R+ T + + +G TI + GL+++ + +P L + Sbjct: 1195 LFVKASEP--GNYINEVPGERTRETQTHLIVKNGSTITIGGLIREVTNVTESKLPFLGDL 1252 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++G FR N+E+ ++ I T +V+P Sbjct: 1253 PVIGQFFRTKSENKEKRDLIIFLTVRVVEP 1282 >gi|120600493|ref|YP_965067.1| general secretion pathway protein D [Shewanella sp. W3-18-1] gi|120560586|gb|ABM26513.1| general secretion pathway protein D [Shewanella sp. W3-18-1] gi|319424804|gb|ADV52878.1| general secretion pathway protein D [Shewanella putrefaciens 200] Length = 705 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 12/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310 F ++ A+ T LA P++T + Q ASF G + T S+++ S V Sbjct: 448 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERK 507 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + GV L P + + L I+ EVS + N G S+ R+ TTV SG +VL Sbjct: 508 EVGVKLKVVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 565 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ +++Q+ + +P L IP+LG LF++S + + + I +KP +RD Sbjct: 566 GGLINEEVQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 616 >gi|114321548|ref|YP_743231.1| general secretion pathway protein D [Alkalilimnicola ehrlichii MLHE-1] gi|114227942|gb|ABI57741.1| general secretion pathway protein D [Alkalilimnicola ehrlichii MLHE-1] Length = 673 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 129/299 (43%), Gaps = 40/299 (13%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----------PSKS 229 S + V+N L+I QV ++ IAEV +D ++++G Q + G + Sbjct: 328 SLRSVLNRLDIR-RAQVLVEAVIAEVSQDRVEELGVQWGVLSEDRGVGLINFGGAAGAGG 386 Query: 230 FAADF--GGKFVSEG--------GDFSVKGVLD-RFSFE--TVLHALERATAIRTLAEPT 276 AD +S+G GD + GV D R S + ++ AL +A L+ P+ Sbjct: 387 GIADVIRAAGAISDGSTADLPQVGDGAAIGVGDLRGSTQVAALIRALSGDSASNILSTPS 446 Query: 277 LTAISGQSASFTSGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 L + + A G + T S +S+ D GV L P + + L I Sbjct: 447 LMTMDNEEAEIVVGQNVPFITGRAIEDSGQAFSSIQRQDVGVQLRIRPQINEGDTLKLEI 506 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + EVS G+ +R T+V + +G +VL GL+ D ++ + +PLL +P Sbjct: 507 EQEVSSVSGGIQGAADLVTDLRSVRTSVMVENGQMVVLGGLIDDQLRTRSQAVPLLGNLP 566 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 LG LFR R E+ + + ++PV +RD + ++ A A +NR+ + Sbjct: 567 GLGRLFRYDRSQVEKRNLMV-----FLRPVIIRD-------TAAQERATAEPYNRMRAM 613 >gi|297537923|ref|YP_003673692.1| type II and III secretion system protein [Methylotenera sp. 301] gi|297257270|gb|ADI29115.1| type II and III secretion system protein [Methylotenera sp. 301] Length = 675 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 114/253 (45%), Gaps = 19/253 (7%) Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGG 236 N + +V L++ + EV R L+++G ++ + S++G S + Sbjct: 331 NDMADPEVMLEIEVLEVSRSRLQELGVEYPNRIGVNSLIPITTVTSATGVVASSTVNTPT 390 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + EG KG D S ++ + + L+ P + + + A G + Sbjct: 391 QLTLEGLLNLSKGRFD-VSPNPAVNFRKTTGDVNLLSNPRIRVRNNEKAKILVGDKVPVI 449 Query: 297 TVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPS 350 T +S+ + SV D G+ L P + + + ++I EVS E I N + + Sbjct: 450 TTTSTANVGISESVQYVDVGLKLDVEPRITADNYVNIKIALEVSSLGERTITRNGATVYT 509 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R A+T + L G T VLAGL+ DD ++ +P L IP++G LF N + + +TEI Sbjct: 510 IGTRDANTILRLKDGETQVLAGLISDDERKNASKLPGLGDIPLIGRLFSNQQDQKNKTEI 569 Query: 411 FIAATPFLVKPVA 423 +A TP ++ +A Sbjct: 570 VLAITPRIISNIA 582 >gi|257487975|ref|ZP_05642016.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 243 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 16/175 (9%) Query: 44 IGKGKK----ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 I KG K ++IG +V+ PVD V+V++P AD+ V SP +Y+FGK GQ ++ Sbjct: 20 IAKGAKGTVDLAIGEGRVLHFSAPVD--SVMVAEPGIADLQVVSPGVIYVFGKAAGQTSL 77 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I + +G++ L + + A + L+ S R+ V+ G ++QD Sbjct: 78 IALDSEGRETAALSLAVSSSTAAVTRPLKALHPQSQARINASGSRVIASG---SVQDVGE 134 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 A +L+ LS G+N + +N AG QV ++V AEV R L + G Sbjct: 135 ATDLN-ALLSTEGQN------FQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYG 182 >gi|190572747|ref|YP_001970592.1| putative general secretion pathway protein D [Stenotrophomonas maltophilia K279a] gi|190010669|emb|CAQ44278.1| putative general secretion pathway protein D precursor [Stenotrophomonas maltophilia K279a] Length = 733 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 128/288 (44%), Gaps = 35/288 (12%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--- 216 AVE + T L +S + S ++V+ L++ QV ++ +AEV D + G Sbjct: 425 AVEETNTLLVRSTPQAW--RSIREVIEKLDVM-PLQVHIEAQVAEVSLDGDLKYGVNWFF 481 Query: 217 ------HSITGSSSGPSKSFAADFGGKFVS-EGGDFSVKGVLDRFSFET---VLHALERA 266 ++TG+ G + AA GG + S G +G+ F+ V+ AL++ Sbjct: 482 DNAVAGRALTGALGGVTLPAAA--GGSWSSFAGAATGGEGLGWAFTGHNGAAVVSALDKV 539 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPT 321 T +R L P++ + A+ G + T + +TG +SV D GV+L P Sbjct: 540 TDVRLLQTPSVFVRNNAEATLNVGDKVPINTTTVNTGIGTGTYSSVQYIDTGVILKVRPR 599 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSYRVRKADTTVELPSGGTIVLAG 372 V G + L I EVS N D P +K T + SG TI+LAG Sbjct: 600 VTRDGTVFLDIVQEVSS---ASNVPDNCNPTERNCNPRISTKKLSTEAAVQSGDTIMLAG 656 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L+ D GIP LS+IP++GALF +E+ + TP +V+ Sbjct: 657 LITDSATDGSSGIPGLSRIPVVGALFGQKSRTSRRSEVIVLLTPSIVR 704 >gi|254515204|ref|ZP_05127265.1| general secretion pathway protein D [gamma proteobacterium NOR5-3] gi|219677447|gb|EED33812.1| general secretion pathway protein D [gamma proteobacterium NOR5-3] Length = 682 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 20/187 (10%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGAT------- 305 S +L+ALE + L+ P+L + + A T G Q + T S ++TG Sbjct: 439 LSMTVILNALEEQSNANILSTPSLLTLDNEEAFITVGQQVPFITGSFTNTGGNNGAQNPF 498 Query: 306 -SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTT 359 ++ + G+ L TP V + L I+ EV+ V A D+ + RK T Sbjct: 499 QTIERENVGITLTVTPQVNEGDSVVLEIEQEVNSLTGATLVASAAAADLITNE-RKIRTK 557 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V G +VL GL+KDD+Q ++ +P+L IP LG LFRN + +T + I + Sbjct: 558 VLAEDGRIVVLGGLIKDDVQSTEQRVPILGDIPFLGRLFRNDAVSVSKTNLMI-----FI 612 Query: 420 KPVAMRD 426 +P +RD Sbjct: 613 RPTIIRD 619 >gi|146294651|ref|YP_001185075.1| general secretion pathway protein D [Shewanella putrefaciens CN-32] gi|145566341|gb|ABP77276.1| general secretion pathway protein D [Shewanella putrefaciens CN-32] Length = 703 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 12/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310 F ++ A+ T LA P++T + Q ASF G + T S+++ S V Sbjct: 446 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERK 505 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + GV L P + + L I+ EVS + N G S+ R+ TTV SG +VL Sbjct: 506 EVGVKLKVVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 563 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ +++Q+ + +P L IP+LG LF++S + + + I +KP +RD Sbjct: 564 GGLINEEVQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 614 >gi|255595286|ref|XP_002536270.1| Fimbrial assembly protein pilQ precursor, putative [Ricinus communis] gi|223520239|gb|EEF26113.1| Fimbrial assembly protein pilQ precursor, putative [Ricinus communis] Length = 536 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F L A E + I+T++ P + + Q+A+F +G + Y+ +SS GATSV+ Sbjct: 367 FLLNMELSAAESDSKIKTISSPRVITANQQTATFDAGTEIPYQQATSS-GATSVSFKKAT 425 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + ++ TP + +I L I EV++ +G +PS K T V + +G T VL G Sbjct: 426 LGVNVTPQITPDDKINLDI--EVTKDDVGQIFNGVPSIDTNKVKTKVLVDNGETAVLGGF 483 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L + + +P S IP++G LF+++ + E+ F + P M D Sbjct: 484 LIESKNDSNQRVPFFSSIPVVGNLFKSTLNTHSKKELL-----FFITPKIMSD 531 >gi|21244259|ref|NP_643841.1| general secretion pathway protein D [Xanthomonas axonopodis pv. citri str. 306] gi|21109904|gb|AAM38377.1| general secretion pathway protein D [Xanthomonas axonopodis pv. citri str. 306] Length = 763 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 82/310 (26%), Positives = 135/310 (43%), Gaps = 44/310 (14%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----F 215 AV + T L +S + SS + V+ L++ QV ++ +AEV G F Sbjct: 450 AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM-PMQVHIEAQVAEVNLTGALSYGVNWYF 506 Query: 216 QHSIT-----GSSSGPSKSFAA------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 ++++T S GP+ AA D G+ G ++ G + ++ AL+ Sbjct: 507 ENAVTTPFNADGSGGPALPSAAGRNIWGDIAGRVTDGGVAWTFLGK----NAAAIISALD 562 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHF 318 + +R L P++ + A+ G + + S +TG S +++ D GV+L Sbjct: 563 TVSNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSYSSVQYIDTGVILKV 622 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY------------RVRKADTTVELPSGG 366 P V G + L I E+S P A + R+ T + SG Sbjct: 623 RPRVTKDGMVFLDIVQEISTPGARPAACTAATTTTVNSAACNVDINTRRVKTEAAVQSGD 682 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425 T++LAGL+ D G+P LSK+PI+GALF N + E+ + TP +V+ P R Sbjct: 683 TMMLAGLIDDSTTNGSVGVPFLSKLPIVGALFGRKTQNTDRREVIVLITPSIVRNPKESR 742 Query: 426 DLSRPDDHYS 435 DL+ D Y+ Sbjct: 743 DLT---DEYA 749 >gi|117922327|ref|YP_871519.1| type IV pilus secretin PilQ [Shewanella sp. ANA-3] gi|117614659|gb|ABK50113.1| type IV pilus secretin PilQ [Shewanella sp. ANA-3] Length = 684 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ +A P +T S Q A++ G + S+S+GA Sbjct: 505 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 563 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSVT + L TP + R+ L I + + G + ++ T V + Sbjct: 564 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 623 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V Sbjct: 624 DNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680 >gi|114045758|ref|YP_736308.1| type IV pilus secretin PilQ [Shewanella sp. MR-7] gi|113887200|gb|ABI41251.1| type IV pilus secretin PilQ [Shewanella sp. MR-7] Length = 684 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ +A P +T S Q A++ G + S+S+GA Sbjct: 505 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 563 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSVT + L TP + R+ L I + + G + ++ T V + Sbjct: 564 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 623 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V Sbjct: 624 DNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680 >gi|24371766|ref|NP_715808.1| general secretion pathway protein D [Shewanella oneidensis MR-1] gi|24345556|gb|AAN53253.1|AE015466_13 general secretion pathway protein D [Shewanella oneidensis MR-1] Length = 704 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 12/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310 F ++ A+ T LA P++T + Q ASF G + T S+++ S V Sbjct: 448 FGALVQAVSADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERK 507 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + GV L P + + L I+ EVS + N G S+ R+ TTV SG +VL Sbjct: 508 EVGVKLKVVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 565 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ +++Q+ + +P L IPILG LF++S + + + I +KP +RD Sbjct: 566 GGLINEEVQESIQKVPFLGDIPILGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 616 >gi|157963580|ref|YP_001503614.1| pilus (MSHA type) biogenesis protein MshL [Shewanella pealeana ATCC 700345] gi|157848580|gb|ABV89079.1| pilus (MSHA type) biogenesis protein MshL [Shewanella pealeana ATCC 700345] Length = 556 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 113/250 (45%), Gaps = 27/250 (10%) Query: 195 QVTLKVTIAEVR-RDILKQIGFQHSITGSSSGPSKSF----AADFGGKFVSE-GGDFSVK 248 QV L+ + EV D +Q S+ G + SF AA G + GG S+K Sbjct: 285 QVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDISFGTSPAAGLGDTITNALGGVTSIK 344 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSST--GAT 305 L+ F T++ L+ + L+ P +TA + Q A G + T VSS+T G T Sbjct: 345 --LEGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGNT 402 Query: 306 SVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD------MP 349 VTT + G+ L TP + G + L I ++ E V + D + Sbjct: 403 PVTTPEVELTPFFSGIALDVTPQIDEQGNVLLHIHPSVIDIKEQVKSIKIADSTLELPLA 462 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R++DT ++ SG +V+ GL+K + +L +PLL IP LG F N + +TE Sbjct: 463 QSEIRESDTVIKAASGDVVVIGGLMKSENIELVSKVPLLGDIPFLGEAFTNRANSTVKTE 522 Query: 410 IFIAATPFLV 419 + I P +V Sbjct: 523 LVILLKPIVV 532 >gi|113972026|ref|YP_735819.1| type IV pilus secretin PilQ [Shewanella sp. MR-4] gi|113886710|gb|ABI40762.1| type IV pilus secretin PilQ [Shewanella sp. MR-4] Length = 684 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ +A P +T S Q A++ G + S+S+GA Sbjct: 505 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 563 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSVT + L TP + R+ L I + + G + ++ T V + Sbjct: 564 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 623 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V Sbjct: 624 DNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680 >gi|312880051|ref|ZP_07739851.1| type II and III secretion system protein [Aminomonas paucivorans DSM 12260] gi|310783342|gb|EFQ23740.1| type II and III secretion system protein [Aminomonas paucivorans DSM 12260] Length = 576 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 11/191 (5%) Query: 237 KFVSEGG-DFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + V GG D SV +F + L ALE A R LA P++ G+ A Sbjct: 373 RIVKPGGLDLSVVAQNPDLNFLDAGLRALETANKGRMLASPSVVVHDGKKAKIALTENVK 432 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-----IGLRIQT-EVSEPVIGVNAGDM 348 Y + G + + G + FTPTV GR + + ++T EV++ + G + Sbjct: 433 YISARDQAGNPTYSEERVGPTIEFTPTV---GRDRVITMEMTLKTGEVTKYIRGGMGEQV 489 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P R+ ++TV + +G V+ GL +D + IP+L IP+LG LFRN + T Sbjct: 490 PQTSTREVNSTVRIRNGEPFVVGGLFRDGQTHSENKIPILGDIPLLGELFRNRTTQKIHT 549 Query: 409 EIFIAATPFLV 419 E+ + P+L+ Sbjct: 550 EVAMIVIPYLL 560 >gi|113968501|ref|YP_732294.1| general secretion pathway protein D [Shewanella sp. MR-4] gi|114045664|ref|YP_736214.1| general secretion pathway protein D [Shewanella sp. MR-7] gi|113883185|gb|ABI37237.1| general secretion pathway protein D [Shewanella sp. MR-4] gi|113887106|gb|ABI41157.1| general secretion pathway protein D [Shewanella sp. MR-7] Length = 700 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 12/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310 F ++ A+ T LA P++T + Q ASF G + T S+++ S V Sbjct: 444 FGALIQAVSADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERK 503 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + GV L P + + L I+ EVS + N G S+ R+ TTV SG +VL Sbjct: 504 EVGVKLKVVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 561 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ +++Q+ + +P L IP+LG LF++S + + + I +KP +RD Sbjct: 562 GGLINEEVQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 612 >gi|209515818|ref|ZP_03264681.1| general secretion pathway protein D [Burkholderia sp. H160] gi|209503845|gb|EEA03838.1| general secretion pathway protein D [Burkholderia sp. H160] Length = 792 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 89/196 (45%), Gaps = 27/196 (13%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVS 299 F V+G +L AL + L+ P L + + A G Y ++ Sbjct: 492 FGVQG------LGALLQALSQTADANVLSTPNLITLDNEEAKIIVGTNVPIQTGSYSNLT 545 Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------AGDMPS 350 SS +T+ T D G+ LH P + G + L++ TE S V G N AG P Sbjct: 546 SSATSTAFNTFDRVDIGLTLHVKPQITDGGILKLQLYTEDSAIVNGTNNSTTNPAG--PE 603 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R +TV +G IVL GL++D+ Q +PLL IP +G LFR+ + R +T + Sbjct: 604 FTKRSIQSTVLCDNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWVGQLFRSEQKTRNKTNL 663 Query: 411 FIAATPFLVKPVAMRD 426 + FL +PV + D Sbjct: 664 MV----FL-RPVILSD 674 >gi|107021570|ref|YP_619897.1| Type II secretion system gspD [Burkholderia cenocepacia AU 1054] gi|116688086|ref|YP_833709.1| general secretion pathway protein D [Burkholderia cenocepacia HI2424] gi|105891759|gb|ABF74924.1| Type II secretion system gspD [Burkholderia cenocepacia AU 1054] gi|116646175|gb|ABK06816.1| general secretion pathway protein D [Burkholderia cenocepacia HI2424] Length = 774 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 22/178 (12%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336 + GQ+ +G Y ++S T + + T+D G+ LH P + G + L++ TE Sbjct: 526 VVGQNVPIATGS---YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTED 582 Query: 337 SEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S V G NA P++ R +T+ +G IVL GL++D+ Q +PLL IP +G Sbjct: 583 SAVVAGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 642 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LFR+ R +T + + ++PV + D S A+A NR + I G Sbjct: 643 QLFRSETKQRAKTNLMV-----FLRPVIISDRST----------AQAVTANRYDYIQG 685 >gi|331010889|gb|EGH90945.1| general secretion pathway protein D [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 778 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 107/252 (42%), Gaps = 27/252 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKFV 239 QV ++ I EV D Q G Q TG+ +G S S + D + Sbjct: 461 QVVIESLIVEVSEDDANQFGVQWQ-TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGL 519 Query: 240 SEG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G G ++ G+ + + + AL+ L+ P L + ++AS G + Sbjct: 520 NVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 579 Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 T S TG +V + G+ L+ P + G + L I EVS + Sbjct: 580 TGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASG 639 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R DT++ L G +VL GLL+D Q E +P LS+IP+LG LFRN + +T Sbjct: 640 TVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKT 699 Query: 409 EIFIAATPFLVK 420 + + P++++ Sbjct: 700 NLMVFLRPYIIR 711 >gi|298530088|ref|ZP_07017490.1| type II and III secretion system protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509462|gb|EFI33366.1| type II and III secretion system protein [Desulfonatronospira thiodismutans ASO3-1] Length = 504 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 70/269 (26%), Positives = 120/269 (44%), Gaps = 17/269 (6%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 E + + + Q+ RN K +N L+ Q+ ++ I E + +++G + S G Sbjct: 241 EETNSLMIQATRNDM--ERVHKAINHLD-RPRPQILMEANIVEATQRTARELGVRWS--G 295 Query: 222 SSSGPSKSFAAD--FGGKFVSEGG---DFSVKGVLDRFSFETV---LHALERATAIRTLA 273 P SF + FG E G D + + R + L ALER + L Sbjct: 296 RYVTP-LSFEDEVGFGDLLRDEAGYTGDMDLSVISARLPGSVLYAHLQALERDGEVNILT 354 Query: 274 EPTLTAISGQSASFTSGGQHL-YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 P++T + Q A FT GQ + Y+TV G+ +V D + L P+V+ + + I Sbjct: 355 SPSITTMDNQMA-FTEHGQRVPYETVDED-GSRTVEFEDAVLRLEVVPSVMEGNHLKMDI 412 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + E + P R + +T + + G TIV++GL K+ + + G+ L +P Sbjct: 413 RVNKDEVDFTRDVRGQPVIRTKHTETNLVVRDGETIVISGLSKETLSDTERGVMGLRDLP 472 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKP 421 LG LF++ +E E I TP +++P Sbjct: 473 GLGWLFKSREQEQEMEEFLIFITPTILEP 501 >gi|304412135|ref|ZP_07393744.1| type IV pilus secretin PilQ [Shewanella baltica OS183] gi|307306879|ref|ZP_07586619.1| type IV pilus secretin PilQ [Shewanella baltica BA175] gi|304349401|gb|EFM13810.1| type IV pilus secretin PilQ [Shewanella baltica OS183] gi|306910457|gb|EFN40887.1| type IV pilus secretin PilQ [Shewanella baltica BA175] Length = 683 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ +A P +T S Q A++ G + S+S+GA Sbjct: 504 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 562 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSVT + L TP + R+ L I + + G + ++ T V + Sbjct: 563 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 622 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V Sbjct: 623 NNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 679 >gi|167736415|ref|ZP_02409189.1| general secretion pathway protein D [Burkholderia pseudomallei 14] gi|167813490|ref|ZP_02445170.1| general secretion pathway protein D [Burkholderia pseudomallei 91] gi|167892116|ref|ZP_02479518.1| general secretion pathway protein D [Burkholderia pseudomallei 7894] Length = 742 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%) Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322 L+ P L + + A G Q++ Y ++S T A + T+D G+ LH P + Sbjct: 500 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 558 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 G + L++ TE S V G N P++ R +TV +G IVL GL++D+ Sbjct: 559 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 618 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q +PLL IP +G LFR+ R++T + + ++PV + D + Sbjct: 619 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 663 Query: 439 DAKAFFFNRVNKIYG 453 A+A NR + I G Sbjct: 664 TAQAVTSNRYDYIQG 678 >gi|126176299|ref|YP_001052448.1| type IV pilus secretin PilQ [Shewanella baltica OS155] gi|125999504|gb|ABN63579.1| type IV pilus secretin PilQ [Shewanella baltica OS155] Length = 683 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ +A P +T S Q A++ G + S+S+GA Sbjct: 504 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 562 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSVT + L TP + R+ L I + + G + ++ T V + Sbjct: 563 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 622 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V Sbjct: 623 NNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 679 >gi|238899270|ref|YP_002924953.1| putative transport protein, possibly in biosynthesis of type IV pilin [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467031|gb|ACQ68805.1| putative transport protein, possibly in biosynthesis of type IV pilin [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 419 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 7/230 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVL 251 Q+ L I + + L ++G + + G K+F + K + +F V + Sbjct: 191 QIELSAHIVTMSSENLYELGIRWGMNALEKGNPLGIKNFNINLPLKNTAIAANFQVASIN 250 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 R + L ALE+ + +A P L Q+AS G Y+ ++ S+ + Sbjct: 251 SRL-LDLELSALEQENQVDIIASPRLITSHQQTASIKQGTDIPYQ-INGKKENVSIEFKE 308 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL--PSGGTIV 369 + + TPT+L +I L+++ + P + + G+ + + K + T ++ G TIV Sbjct: 309 AVLGMEVTPTILGNDKIRLKLKISQNMPGMAIKRGNAETLAIDKQEITTQIIVKHGETIV 368 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + + +P IP LGALFR + E+ I TP L+ Sbjct: 369 LGGIFQKKNNHRIDKVPGFGNIPFLGALFRQDVNQQRRRELVIFITPKLI 418 >gi|262280702|ref|ZP_06058485.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] gi|262257602|gb|EEY76337.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] Length = 758 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 66/257 (25%), Positives = 109/257 (42%), Gaps = 33/257 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-------------- 240 QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 394 QVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGSAGAA 453 Query: 241 ----------EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G F+V + R ++ ++ AL+ T L+ P++ + + A Sbjct: 454 SAIAGGANKGNGATFAVGNFENSRKAYGALIQALKANTKSNLLSTPSIVTMDNEEAYIVV 513 Query: 290 GGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G + T S +T +T + + D GV L P + G + L ++ EVS Sbjct: 514 GQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRLEVEQEVSNVQTSK 573 Query: 344 -NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 A D+ + + R T V G T+VL GL+ DD++ ++GIP LS IP LG LFR+ Sbjct: 574 GQAADLITNK-RAIKTAVLAEHGQTVVLGGLVSDDVELSRQGIPGLSSIPYLGRLFRSDS 632 Query: 403 FNREETEIFIAATPFLV 419 + + + + P +V Sbjct: 633 RSNTKRNLLVFIHPTIV 649 >gi|317484811|ref|ZP_07943707.1| general secretion pathway protein D [Bilophila wadsworthia 3_1_6] gi|316923941|gb|EFV45131.1| general secretion pathway protein D [Bilophila wadsworthia 3_1_6] Length = 665 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 31/266 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS-----------SGPSKSFAADFGGKFVSEGG 243 QV ++ I EV + G +I G++ +G + S ++ K VS Sbjct: 367 QVFIEALIMEVSSEASFSFGINWAIGGNTGDAAIVGGVSLNGGAVSLSSSGANKTVSLPA 426 Query: 244 DFSVKGVLD--------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 S+ +L ++ +++L+A+ + + LA P L + + AS + Sbjct: 427 GVSIGAILKDAITVGNTSYNIQSILNAVRGNSDVDVLATPQLLTLDNEEASVEVVDNIPF 486 Query: 296 KTVSSSTGATSVTTH-----DYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGD 347 S++ TT D GV L TP + G + L ++ EVS + +I + GD Sbjct: 487 TKESTTRNDNDFTTQSMDYKDVGVKLKITPRISDDGSLRLEVEQEVSRVTQGLITLTNGD 546 Query: 348 M---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P+ R R TT+ L T V+ GLL D + +P L IP+LG LF++ Sbjct: 547 QLVAPTTRKRLVKTTILLQDSQTAVIGGLLDDQKTYNQSEVPGLGSIPVLGWLFKSRNKK 606 Query: 405 REETEIFIAATPFLVKPVA-MRDLSR 429 +T +FI TP +++ A DL+R Sbjct: 607 STQTNLFIFITPKVIRNAADSADLTR 632 >gi|217975149|ref|YP_002359900.1| type IV pilus secretin PilQ [Shewanella baltica OS223] gi|217500284|gb|ACK48477.1| type IV pilus secretin PilQ [Shewanella baltica OS223] Length = 683 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ +A P +T S Q A++ G + S+S+GA Sbjct: 504 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 562 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSVT + L TP + R+ L I + + G + ++ T V + Sbjct: 563 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 622 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V Sbjct: 623 NNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 679 >gi|167908851|ref|ZP_02495942.1| general secretion pathway protein D [Burkholderia pseudomallei 112] Length = 745 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%) Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322 L+ P L + + A G Q++ Y ++S T A + T+D G+ LH P + Sbjct: 500 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 558 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 G + L++ TE S V G N P++ R +TV +G IVL GL++D+ Sbjct: 559 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 618 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q +PLL IP +G LFR+ R++T + + ++PV + D + Sbjct: 619 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 663 Query: 439 DAKAFFFNRVNKIYG 453 A+A NR + I G Sbjct: 664 TAQAVTSNRYDYIQG 678 >gi|167843644|ref|ZP_02469152.1| general secretion pathway protein D [Burkholderia pseudomallei B7210] Length = 743 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%) Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322 L+ P L + + A G Q++ Y ++S T A + T+D G+ LH P + Sbjct: 500 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 558 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 G + L++ TE S V G N P++ R +TV +G IVL GL++D+ Sbjct: 559 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 618 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q +PLL IP +G LFR+ R++T + + ++PV + D + Sbjct: 619 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 663 Query: 439 DAKAFFFNRVNKIYG 453 A+A NR + I G Sbjct: 664 TAQAVTSNRYDYIQG 678 >gi|117918609|ref|YP_867801.1| general secretion pathway protein D [Shewanella sp. ANA-3] gi|117610941|gb|ABK46395.1| general secretion pathway protein D [Shewanella sp. ANA-3] Length = 702 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 12/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310 F ++ A+ T LA P++T + Q ASF G + T S+++ S V Sbjct: 446 FGALVQAVSADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERK 505 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + GV L P + + L I+ EVS + N G S+ R+ TTV SG +VL Sbjct: 506 EVGVKLKVVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 563 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ +++Q+ + +P L IP+LG LF++S + + + I +KP +RD Sbjct: 564 GGLINEEVQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMI-----FIKPTIIRD 614 >gi|56476309|ref|YP_157898.1| general (Type II) secretion pathway (GSP) D protein [Aromatoleum aromaticum EbN1] gi|56312352|emb|CAI06997.1| General (Type II) secretion pathway (GSP) D protein [Aromatoleum aromaticum EbN1] Length = 769 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 4/166 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGV 314 VL+A+ + + + ++ P++ + +A G Q ++ + T +TS+ D GV Sbjct: 552 VLNAMAQKSLVNVISSPSVMVLDNHTAVIHVGDQQPIRSTQTVTDGGTTSTSIQYKDTGV 611 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L TP+ + G + + I+ V++ +A S+ R+ + V + +G T++L GL+ Sbjct: 612 MLQVTPSANAGGMVAMDIKQSVTDVGAVDDATGQRSFNQREVASKVAVRTGETVILGGLI 671 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +D K G+P L IP+LG LF + TE+ + TP +V+ Sbjct: 672 RDSDTNGKTGVPWLHDIPVLGPLFGTTSDVTRRTELLVMITPRVVQ 717 >gi|332702379|ref|ZP_08422467.1| general secretion pathway protein D [Desulfovibrio africanus str. Walvis Bay] gi|332552528|gb|EGJ49572.1| general secretion pathway protein D [Desulfovibrio africanus str. Walvis Bay] Length = 677 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 16/184 (8%) Query: 258 TVLHALERATAIRT----LAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSV 307 T L+AL A I + ++ P + + Q AS T Y+T +ST T Sbjct: 447 TNLNALIAAGKINSDFNIISTPQIMTLDNQEASITVAENRPYQTSQTSTLNDLNNIVTQF 506 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPS 364 T D G +L TP + G I L+I E SE GV+ +P R R +T V + Sbjct: 507 TYRDVGTILKLTPQINEGGMIKLKIFQEFSEVDQAATGVST--LPVTRKRTTETAVVIRE 564 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVA 423 G T+VL+GL+ +PLL IP+LG LFR +T + + TP +V P Sbjct: 565 GQTVVLSGLIGKSATSSSSRVPLLGDIPLLGWLFRYDTREERKTNLLVFITPRVVDSPEK 624 Query: 424 MRDL 427 +DL Sbjct: 625 AQDL 628 >gi|323494823|ref|ZP_08099920.1| type IV pilus assembly protein PilQ [Vibrio brasiliensis LMG 20546] gi|323310931|gb|EGA64098.1| type IV pilus assembly protein PilQ [Vibrio brasiliensis LMG 20546] Length = 389 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A++ ++ P L + Q+A G + Y SS GA+SV + L T Sbjct: 227 LSAMQTEAKAEVISRPKLMTTNKQAAYIEQGSEIPYFE-SSENGASSVAFKKAVLSLKVT 285 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P +LS R+ L + P V+ +G+ + ++ DT V + +G T+VL G+ + Sbjct: 286 PQILSDDRLILDLSVTQDRPGNVVKTGSGEAVAINTQRIDTQVLVNNGQTVVLGGIYQHS 345 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +PL +P++G+LFR S N ++E+ I TP +V Sbjct: 346 VTDAVDKVPLFGDLPLIGSLFRRSYQNIAKSELLIFVTPTIV 387 >gi|224368216|ref|YP_002602379.1| PilQ [Desulfobacterium autotrophicum HRM2] gi|223690932|gb|ACN14215.1| PilQ [Desulfobacterium autotrophicum HRM2] Length = 727 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 17/233 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---DFS-VKGV 250 Q+ + + EV ++ K +G S+ S + + F S+G DFS + G Sbjct: 499 QIMISARVVEVNKNFSKSLGIDWSV--SKNNANSGFDVIMNYPVASDGSLGFDFSRIFGT 556 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + + L A E ++ ++ P + + + A G ++ Y S G +SV Sbjct: 557 --ELALDATLSASEIKGDVKIISSPKILTLDNKKAKIKQGLEYAYLERDDS-GGSSVLFK 613 Query: 311 DYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + ++L TP V RIG+ + + +++ V GV PS +A+T + + G T Sbjct: 614 NIDLLLEVTPHVTPDNRIGMSVLITKNDLASVVDGV-----PSLSTNEAETELLVNDGNT 668 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IV+ G++K+ + G P LS IP+LG LF + + E+ I TP +V+ Sbjct: 669 IVIGGIVKNTSSTSETGFPGLSNIPLLGKLFGSDSTEDTKNELLIFITPTIVQ 721 >gi|172059128|ref|YP_001806780.1| general secretion pathway protein D [Burkholderia ambifaria MC40-6] gi|171991645|gb|ACB62564.1| general secretion pathway protein D [Burkholderia ambifaria MC40-6] Length = 771 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 26/231 (11%) Query: 214 GFQHSITGSSSGPSKS---FAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERAT 267 G +SI +SG + + AA+ G +S+G ++ + + F + +L + Sbjct: 446 GLGNSIVNLTSGGTAATTGLAANLAG--LSQG--LNIGWLHNMFGVQGLGALLQYFAGVS 501 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHF 318 L+ P L + + A G Q++ Y ++S T + + T+D G+ LH Sbjct: 502 DANVLSTPNLITLDNEEAKIVVG-QNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHV 560 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + G + L++ TE S V G NA P++ R +T+ +G IVL GL++D+ Sbjct: 561 KPQITDGGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDN 620 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 Q +PLL IP +G LFR+ R++T + + ++PV + D S Sbjct: 621 YQVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMV-----FLRPVIISDRS 666 >gi|91776764|ref|YP_546520.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91710751|gb|ABE50679.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 657 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 29/252 (11%) Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVSEGGDFS 246 N + +V L++ + EV R+ L+++G + S+T S+ + ++ G ++ Sbjct: 323 NDLADPEVMLEIEVMEVSRERLQELGIDYPTSLTASAGLSIDAMRSNNSGTYL------- 375 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303 F+ L+ + I LA P + + A G + T ++ G Sbjct: 376 -------FNSNPTLNFRKTTGDINILANPRIRVRNNDKAQVLVGDKVPVITTVATAGVGS 428 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRV--RKADTT 359 + SV D G+ L P + + ++I EVS +N G + Y++ R A T Sbjct: 429 SQSVQYLDVGLKLEAEPRITLDDFVNIKIALEVSSLGSSTTLNGGGV-VYQIGTRNASTL 487 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T +LAGL+ D+ ++ +P L IP+LG LF N NR++TEI +A TP +V Sbjct: 488 LRLKDGETQILAGLINDEERRNTSRLPGLGDIPLLGRLFSNQTDNRKKTEIVLAITPHVV 547 Query: 420 KPVAMRDLSRPD 431 ++SRP+ Sbjct: 548 N-----NISRPE 554 >gi|260888944|ref|ZP_05900207.1| hypothetical protein GCWU000323_00103 [Leptotrichia hofstadii F0254] gi|260861391|gb|EEX75891.1| putative general secretion pathway protein D [Leptotrichia hofstadii F0254] Length = 399 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 14/229 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGGKFVSEGGDFSVKGVL 251 ++Q+ +K TI + ++ +++G SI ++S +K + A F VS FS G Sbjct: 166 KEQIIIKGTIIDTSSNLFERLGIDWSINSNNSNATKDNLVAKFLNGEVSIASIFSKGGRF 225 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVT 308 F + L+ IR A PTL + + + L KT T Sbjct: 226 LGIDF----NLLKENGDIRIEAMPTLMIMENEEGELKVTEEVLVGEKKTTKKDTEYVEPI 281 Query: 309 THDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELP 363 + G+V P + +I L+I TE+S + NA + + TT+ L Sbjct: 282 FSEAGIVFRINPEIRKINGIKKILLKIDTEISNFKLTSSYNASSGAKQK-NQTKTTITLN 340 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +GG+ + GL +D ++ +P+LSKIPI+G LF+ R NRE +I+I Sbjct: 341 NGGSTFIGGLKQDVSKETIRRVPVLSKIPIIGPLFKYRRTNREMRDIYI 389 >gi|302036706|ref|YP_003797028.1| putative type IV pili biogenesis protein PilQ [Candidatus Nitrospira defluvii] gi|300604770|emb|CBK41102.1| putative Type IV pili biogenesis protein PilQ [Candidatus Nitrospira defluvii] Length = 664 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 109/253 (43%), Gaps = 30/253 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVK- 248 QV ++ I + + +G Q I GSSSG S +F G F ++ DF + Sbjct: 412 QVQIEARIVQADTTYTRSLGVQWGIQNVNQLGSSSGTS-AFKTGTTGAFGAQVSDFLINL 470 Query: 249 ----------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G D + L A E + +A P +T + + A G Sbjct: 471 PANPGLPSVPGAGFSIGKTDGAMLDVRLSAGELLGLTKVIAAPKITTLDKRDAKIAQGES 530 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS--PGRIGLRIQTEV--SEPVIGVNAGDM 348 ++T +S T T D + L+ TP + S P IG +I +V + +G + Sbjct: 531 IPFQT--TSLQGTQTTFVDANLELNVTPQITSRDPKEIGKQILMKVRATRNAVGARSNPA 588 Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 PS R+A T V + G T+V+ G+ D GIP LS+IP+LG LF+N N + Sbjct: 589 GPSIDRREATTQVLVRDGETMVIGGVFVDTQSNNVAGIPYLSRIPVLGWLFKNKTENVSK 648 Query: 408 TEIFIAATPFLVK 420 E+ I TP +V+ Sbjct: 649 QELLIFLTPTIVR 661 >gi|153002584|ref|YP_001368265.1| type IV pilus secretin PilQ [Shewanella baltica OS185] gi|160877305|ref|YP_001556621.1| type IV pilus secretin PilQ [Shewanella baltica OS195] gi|151367202|gb|ABS10202.1| type IV pilus secretin PilQ [Shewanella baltica OS185] gi|160862827|gb|ABX51361.1| type IV pilus secretin PilQ [Shewanella baltica OS195] gi|315269510|gb|ADT96363.1| type IV pilus secretin PilQ [Shewanella baltica OS678] Length = 683 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ +A P +T S Q A++ G + S+S+GA Sbjct: 504 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 562 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSVT + L TP + R+ L I + + G + ++ T V + Sbjct: 563 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 622 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V Sbjct: 623 NNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 679 >gi|114561293|ref|YP_748806.1| general secretion pathway protein D [Shewanella frigidimarina NCIMB 400] gi|114332586|gb|ABI69968.1| general secretion pathway protein D [Shewanella frigidimarina NCIMB 400] Length = 710 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 22/182 (12%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD--- 311 +F ++ A+ T LA P++T + Q ASF G + V TG+TS + +D Sbjct: 450 NFAALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDE-----VPIITGSTSSSNNDNPF 504 Query: 312 -------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 GV L P + + L I+ EVS + N G S+ R+ TTV S Sbjct: 505 QTVERKEVGVKLKVVPQINEGSSVKLTIEQEVSG--VNGNTGVDISFSTRRLTTTVMADS 562 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G +VL GL+ +++Q+ + +P+L IP +G LF++S + + + I +KP + Sbjct: 563 GQIVVLGGLINEEVQESIQKVPILGDIPFIGHLFKSSSSKKTKKNLMI-----FIKPTII 617 Query: 425 RD 426 RD Sbjct: 618 RD 619 >gi|32477970|ref|NP_870964.1| general secretion pathway protein D (outD) [Rhodopirellula baltica SH 1] gi|32448527|emb|CAD78042.1| general secretion pathway protein D (outD) [Rhodopirellula baltica SH 1] Length = 822 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 12/198 (6%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A FG F ++ + D F +L AL+ + + LA+P++TAI + AS Sbjct: 404 AVTFGTLGSGGASSFGIRTLTDTFDTSVLLRALDSSDEAKLLADPSITAIDRREASIKIV 463 Query: 291 GQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 Q S + G+ V D G++L TP + + I L++Q E S V G Sbjct: 464 QQIPIVAASPAEGSNVVFAQVEFKDAGIILKVTPRISNDNTIELQVQPEYS-----VKVG 518 Query: 347 DM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 ++ P R A+TTV + +G L GL + I + G+P L + +G LFR+ Sbjct: 519 EIENNPVIDSRTAETTVRVANGHMFTLGGLRQKRIIEGTSGVPYLRDLKYVGKLFRSHST 578 Query: 404 NREETEIFIAATPFLVKP 421 E+E+ + P ++ P Sbjct: 579 EVRESELIVFLKPEIISP 596 >gi|114045976|ref|YP_736526.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-7] gi|113887418|gb|ABI41469.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-7] Length = 561 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 28/219 (12%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 T + +G S A GG S+KG F T++ L+ + L+ P +TA Sbjct: 328 TSAGAGLSDKITASLGGVT-----SLSIKG----SDFNTMISLLDTQGDVDVLSSPRVTA 378 Query: 280 ISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIG 329 + Q A G + T SST G T VTT G+ L TP + G + Sbjct: 379 SNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKDGNVL 438 Query: 330 LRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L + V + + + ++P +R++DT + SG +V+ GL+K + + Sbjct: 439 LHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENTE 498 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL IP++G LF+N +++TE+ I P +V Sbjct: 499 VVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537 >gi|117619719|ref|YP_857681.1| type IV pilus secretin PilQ [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561126|gb|ABK38074.1| type IV pilus secretin PilQ [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 733 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 97/234 (41%), Gaps = 20/234 (8%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----------------FSV 247 VR + K G +S +G+ G S + G G D F V Sbjct: 497 VRWGVTKNDGHGNSTSGTIEGNDSSGNNNGGSTITRPGVDDRLNVNLPVTNAAGTLAFQV 556 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + D + L ALE+ + +A P +T + Q + G + SSS+GATSV Sbjct: 557 ARLADGTLLDLELSALEKESKAEIIASPRVTT-ANQKPALIEQGTEIPYVESSSSGATSV 615 Query: 308 TTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 T + L TP + R+ L + + + GD S + T V + +G Sbjct: 616 TFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDAVSINAQSITTQVLVNNG 675 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T+VL G+ + I+ +PLL IP LG LFR + ++ E+ I TP +V Sbjct: 676 ETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSENKKRELLIFVTPKIV 729 >gi|114330532|ref|YP_746754.1| type II and III secretion system protein [Nitrosomonas eutropha C91] gi|114307546|gb|ABI58789.1| type II and III secretion system protein [Nitrosomonas eutropha C91] Length = 767 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 9/160 (5%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRI 328 LA P + S + A G + TV+++ A S T D G+ P V + + Sbjct: 416 LANPRIRVKSREKAKIHIGNKEPVFTVTNTANVGSAASATYIDVGLKFEVEPVVRTNNEV 475 Query: 329 GLRIQTEVSEPVI------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 L+ EVS + G NA R A+T +EL G T VLAGL++DD+ ++K Sbjct: 476 TLKALLEVSSNLGEKRSGGGDNAATAIVIGTRTAETVLELRDGETQVLAGLIQDDLSRVK 535 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 GI L++IPILG +F +TEI + TP +++ V Sbjct: 536 SGIAGLTEIPILGDIFSKQVRKHNKTEIILLITPHIIRNV 575 >gi|327538204|gb|EGF24886.1| general secretion pathway protein D (outD) [Rhodopirellula baltica WH47] Length = 822 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 12/198 (6%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A FG F ++ + D F +L AL+ + + LA+P++TAI + AS Sbjct: 404 AVTFGTLGSGGASSFGIRTLTDTFDTSVLLRALDSSDEAKLLADPSITAIDRREASIKIV 463 Query: 291 GQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 Q S + G+ V D G++L TP + + I L++Q E S V G Sbjct: 464 QQIPIVAASPAEGSNVVFAQVEFKDAGIILKVTPRISNDNTIELQVQPEYS-----VKVG 518 Query: 347 DM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 ++ P R A+TTV + +G L GL + I + G+P L + +G LFR+ Sbjct: 519 EIENNPVIDSRTAETTVRVANGHMFTLGGLRQKRIIEGTSGVPYLRDLKYVGKLFRSHST 578 Query: 404 NREETEIFIAATPFLVKP 421 E+E+ + P ++ P Sbjct: 579 EVRESELIVFLKPEIISP 596 >gi|254357385|ref|ZP_04973659.1| general secretion pathway protein D [Burkholderia mallei 2002721280] gi|148026449|gb|EDK84534.1| general secretion pathway protein D [Burkholderia mallei 2002721280] Length = 750 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%) Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322 L+ P L + + A G Q++ Y ++S T A + T+D G+ LH P + Sbjct: 500 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 558 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 G + L++ TE S V G N P++ R +TV +G IVL GL++D+ Sbjct: 559 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 618 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q +PLL IP +G LFR+ R++T + + ++PV + D + Sbjct: 619 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 663 Query: 439 DAKAFFFNRVNKIYG 453 A+A NR + I G Sbjct: 664 TAQAVTSNRYDYIQG 678 >gi|330886181|gb|EGH20082.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. mori str. 301020] Length = 428 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 32/256 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238 QV ++ I E D KQ+G + + ++SG K ++ D G F Sbjct: 175 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPF 234 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 235 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 294 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 295 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 348 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 349 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 408 Query: 409 EIFIAATPFLVKPVAM 424 E+ + TP ++ A+ Sbjct: 409 ELLVFLTPRIMNNQAI 424 >gi|53717646|ref|YP_106632.1| general secretory pathway protein D [Burkholderia pseudomallei K96243] gi|52208060|emb|CAH33990.1| general secretory pathway protein D [Burkholderia pseudomallei K96243] Length = 757 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%) Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322 L+ P L + + A G Q++ Y ++S T A + T+D G+ LH P + Sbjct: 507 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 565 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 G + L++ TE S V G N P++ R +TV +G IVL GL++D+ Sbjct: 566 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 625 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q +PLL IP +G LFR+ R++T + + ++PV + D + Sbjct: 626 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 670 Query: 439 DAKAFFFNRVNKIYG 453 A+A NR + I G Sbjct: 671 TAQAVTSNRYDYIQG 685 >gi|126441466|ref|YP_001057062.1| general secretion pathway protein D [Burkholderia pseudomallei 668] gi|126220959|gb|ABN84465.1| general secretion pathway protein D [Burkholderia pseudomallei 668] Length = 757 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%) Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322 L+ P L + + A G Q++ Y ++S T A + T+D G+ LH P + Sbjct: 507 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 565 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 G + L++ TE S V G N P++ R +TV +G IVL GL++D+ Sbjct: 566 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 625 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q +PLL IP +G LFR+ R++T + + ++PV + D + Sbjct: 626 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 670 Query: 439 DAKAFFFNRVNKIYG 453 A+A NR + I G Sbjct: 671 TAQAVTSNRYDYIQG 685 >gi|53723933|ref|YP_104304.1| general secretion pathway protein D [Burkholderia mallei ATCC 23344] gi|121600876|ref|YP_994796.1| general secretion pathway protein D [Burkholderia mallei SAVP1] gi|124384347|ref|YP_001027865.1| general secretion pathway protein D [Burkholderia mallei NCTC 10229] gi|126450814|ref|YP_001082187.1| general secretion pathway protein D [Burkholderia mallei NCTC 10247] gi|238562298|ref|ZP_00440689.2| general secretion pathway protein D [Burkholderia mallei GB8 horse 4] gi|52427356|gb|AAU47949.1| general secretion pathway protein D [Burkholderia mallei ATCC 23344] gi|121229686|gb|ABM52204.1| general secretion pathway protein D [Burkholderia mallei SAVP1] gi|124292367|gb|ABN01636.1| general secretion pathway protein D [Burkholderia mallei NCTC 10229] gi|126243684|gb|ABO06777.1| general secretion pathway protein D [Burkholderia mallei NCTC 10247] gi|238522939|gb|EEP86381.1| general secretion pathway protein D [Burkholderia mallei GB8 horse 4] Length = 757 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%) Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322 L+ P L + + A G Q++ Y ++S T A + T+D G+ LH P + Sbjct: 507 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 565 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 G + L++ TE S V G N P++ R +TV +G IVL GL++D+ Sbjct: 566 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 625 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q +PLL IP +G LFR+ R++T + + ++PV + D + Sbjct: 626 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 670 Query: 439 DAKAFFFNRVNKIYG 453 A+A NR + I G Sbjct: 671 TAQAVTSNRYDYIQG 685 >gi|50083568|ref|YP_045078.1| putative general secretion pathway protein [Acinetobacter sp. ADP1] gi|49529544|emb|CAG67256.1| putative general secretion pathway protein [Acinetobacter sp. ADP1] Length = 772 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 110/259 (42%), Gaps = 34/259 (13%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------- 240 +QV ++ I EV D Q+G Q ++ +SG ++ G S Sbjct: 394 EQVLIEAAIIEVSGDDSDQLGIQWALGDLNSGVGLLSFSNVGASLASIAAGYASTGTAGA 453 Query: 241 -----------EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G F+V + R ++ ++ AL+ T L+ P++ + + A Sbjct: 454 AAAIASGTNSGNGATFAVGDFSNSRKAYGALIQALKSNTKSNVLSTPSIVTMDNEEAYIV 513 Query: 289 SGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 G + T S STG+T +V D GV L P + G + L ++ EVS+ Sbjct: 514 VGQNVPFVTGSVSTGSTGTINPYTTVERKDVGVTLKVIPHIGENGTVRLEVEQEVSDVQS 573 Query: 342 GV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 A D+ + + R T V G T+VL GL+ D+ ++GIP LS IP LG LFR Sbjct: 574 SKGQATDLVTNK-RAIKTAVLAEHGQTVVLGGLISDNTSLTRQGIPGLSNIPYLGRLFRA 632 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ + + P ++ Sbjct: 633 DSKSNEKRNLLVFIHPTII 651 >gi|157377488|ref|YP_001476088.1| general secretion pathway protein D [Shewanella sediminis HAW-EB3] gi|157319862|gb|ABV38960.1| general secretion pathway protein D [Shewanella sediminis HAW-EB3] Length = 724 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 16/178 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTH 310 F ++ A+ T LA P++T + Q ASF G + T S+S+ + +V Sbjct: 448 FGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSTSSSSNTNPFQTVERK 507 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTI 368 + GV L P + + L I+ EVS G+N G ++ R+ TTV SG + Sbjct: 508 EVGVKLKVVPQINEGTSVKLTIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQIV 563 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 VL GL+K+++Q+ + +P L +PI+G LF++S +T + + +KP +RD Sbjct: 564 VLGGLIKEEVQESVQKVPFLGDLPIIGHLFKSSSSGTRKTNLMV-----FIKPTIIRD 616 >gi|330810080|ref|YP_004354542.1| type II secretion pathway protein D precursor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378188|gb|AEA69538.1| putative type II secretion pathway protein D precursor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 786 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 68/268 (25%), Positives = 113/268 (42%), Gaps = 28/268 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++V++LL+ QV ++ I EV D + G Q TG+ G + GG ++ Sbjct: 453 REVIDLLD-QRRAQVVIESLIVEVGEDDASEFGVQWQ-TGNLGGSGVIGGVNLGGTGLNL 510 Query: 242 GGDFSVK------------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G S+ G+ + + AL+ L+ P L + + Sbjct: 511 NGKTSIDVLPQGLNLGVVNGTVDIPGIGKILDLKVLARALKSKGGTNVLSTPNLLTLDNE 570 Query: 284 SAS--------FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +AS F SG +S+ +VT + G+ L+ P + G + L I E Sbjct: 571 AASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQE 630 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 VS ++ R DT++ L G +VL GLL+D Q + +P LS IP +G Sbjct: 631 VSSVDNRASSTTGIVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSTIPGIG 690 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVA 423 ALFRN R +T + + P++++ A Sbjct: 691 ALFRNERRQITKTNLMVFLRPYIIRDTA 718 >gi|126454161|ref|YP_001064292.1| general secretion pathway protein D [Burkholderia pseudomallei 1106a] gi|134281369|ref|ZP_01768077.1| general secretion pathway protein D [Burkholderia pseudomallei 305] gi|217423996|ref|ZP_03455496.1| general secretion pathway protein D [Burkholderia pseudomallei 576] gi|226193043|ref|ZP_03788653.1| general secretion pathway protein D [Burkholderia pseudomallei Pakistan 9] gi|237814399|ref|YP_002898850.1| general secretion pathway protein D [Burkholderia pseudomallei MSHR346] gi|254258553|ref|ZP_04949607.1| general secretion pathway protein D [Burkholderia pseudomallei 1710a] gi|126227803|gb|ABN91343.1| general secretion pathway protein D [Burkholderia pseudomallei 1106a] gi|134247036|gb|EBA47122.1| general secretion pathway protein D [Burkholderia pseudomallei 305] gi|163639391|gb|ABY28246.1| general secretion pathway protein D [Burkholderia pseudomallei] gi|217393059|gb|EEC33081.1| general secretion pathway protein D [Burkholderia pseudomallei 576] gi|225934643|gb|EEH30620.1| general secretion pathway protein D [Burkholderia pseudomallei Pakistan 9] gi|237506672|gb|ACQ98990.1| general secretion pathway protein D [Burkholderia pseudomallei MSHR346] gi|254217242|gb|EET06626.1| general secretion pathway protein D [Burkholderia pseudomallei 1710a] Length = 757 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%) Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322 L+ P L + + A G Q++ Y ++S T A + T+D G+ LH P + Sbjct: 507 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 565 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 G + L++ TE S V G N P++ R +TV +G IVL GL++D+ Sbjct: 566 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 625 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q +PLL IP +G LFR+ R++T + + ++PV + D + Sbjct: 626 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 670 Query: 439 DAKAFFFNRVNKIYG 453 A+A NR + I G Sbjct: 671 TAQAVTSNRYDYIQG 685 >gi|4139236|gb|AAD05173.1| general secretory pathway protein D [Burkholderia pseudomallei 1026b] Length = 750 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%) Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322 L+ P L + + A G Q++ Y ++S T A + T+D G+ LH P + Sbjct: 500 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 558 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 G + L++ TE S V G N P++ R +TV +G IVL GL++D+ Sbjct: 559 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 618 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q +PLL IP +G LFR+ R++T + + ++PV + D + Sbjct: 619 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 663 Query: 439 DAKAFFFNRVNKIYG 453 A+A NR + I G Sbjct: 664 TAQAVTSNRYDYIQG 678 >gi|113971816|ref|YP_735609.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-4] gi|113886500|gb|ABI40552.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-4] Length = 561 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 28/219 (12%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 T + +G S A GG S+KG F T++ L+ + L+ P +TA Sbjct: 328 TSAGAGLSDKITASLGGVT-----SLSIKG----SDFNTMISLLDTQGDVDVLSSPRVTA 378 Query: 280 ISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIG 329 + Q A G + T SST G T VTT G+ L TP + G + Sbjct: 379 SNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKDGNVL 438 Query: 330 LRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L + V + + + ++P +R++DT + SG +V+ GL+K + + Sbjct: 439 LHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENTE 498 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL IP++G LF+N +++TE+ I P +V Sbjct: 499 VVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537 >gi|39997126|ref|NP_953077.1| type IV pilus biogenesis protein PilQ [Geobacter sulfurreducens PCA] gi|39984016|gb|AAR35404.1| type IV pilus biogenesis protein PilQ [Geobacter sulfurreducens PCA] gi|298506139|gb|ADI84862.1| type IV pilus secretin lipoprotein PilQ [Geobacter sulfurreducens KN400] Length = 894 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 20/241 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGG-----------KFV 239 E QV ++ I E + +G Q I + SG +S A FGG Sbjct: 659 EKQVLIEARIVEATSTFTRDLGVQWGIHSNDSGADIIRSVDAGFGGIVTPPPASGFPAAT 718 Query: 240 SEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 S GG + + + L A A ++ ++ P + ++ ++A + G Y+T Sbjct: 719 SSGGAVGISFAKMGSLQVDLRLSAAAVAGLVKIVSTPKVVTLNNKAAKISQGQSIPYQTT 778 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 S+ T + + L TP + + G + ++I+ + G P ++A T Sbjct: 779 SAE--GTKTEFVEAALTLEVTPHITADGSVSMKIKASNNS----AGTGSPPPINKKEATT 832 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + + +G T V+ G+ D G+P L IP+LG LF+++ N+ +TE+ I TP + Sbjct: 833 ELLVKNGETTVIGGIYVDSDTDEDRGVPFLMDIPVLGWLFKSNTKNKTKTELLIFITPKI 892 Query: 419 V 419 V Sbjct: 893 V 893 >gi|76811977|ref|YP_331636.1| general secretion pathway protein D [Burkholderia pseudomallei 1710b] gi|167822031|ref|ZP_02453502.1| general secretion pathway protein D [Burkholderia pseudomallei 9] gi|167900627|ref|ZP_02487832.1| general secretion pathway protein D [Burkholderia pseudomallei NCTC 13177] gi|167921121|ref|ZP_02508212.1| general secretion pathway protein D [Burkholderia pseudomallei BCC215] gi|254194560|ref|ZP_04900991.1| general secretion pathway protein D [Burkholderia pseudomallei S13] gi|76581430|gb|ABA50905.1| general secretion pathway protein D [Burkholderia pseudomallei 1710b] gi|169651310|gb|EDS84003.1| general secretion pathway protein D [Burkholderia pseudomallei S13] Length = 750 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%) Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322 L+ P L + + A G Q++ Y ++S T A + T+D G+ LH P + Sbjct: 500 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 558 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 G + L++ TE S V G N P++ R +TV +G IVL GL++D+ Sbjct: 559 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 618 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q +PLL IP +G LFR+ R++T + + ++PV + D + Sbjct: 619 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 663 Query: 439 DAKAFFFNRVNKIYG 453 A+A NR + I G Sbjct: 664 TAQAVTSNRYDYIQG 678 >gi|224368244|ref|YP_002602407.1| GspD1 [Desulfobacterium autotrophicum HRM2] gi|223690960|gb|ACN14243.1| GspD1 [Desulfobacterium autotrophicum HRM2] Length = 653 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 23/223 (10%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET---VLHALERATAIRTLAEPT 276 + ++ G F+A GK ++ GG SF T V+ A + L+ P Sbjct: 416 SAAAGGLGSGFSAGIMGKSITIGG----------VSFPTLGAVIQAYQSDKDSHILSTPQ 465 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRI 328 + + A+ T G Y+T SS T++TT Y G+ L TP + + Sbjct: 466 ILTTDNEEATLTIGKNVPYQTRSSVDNDTTLTTSSYNSYEYKDVGITLKITPQISKDRLV 525 Query: 329 GLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L + E+++ + D P+ RK +TT+ + G T+V+ GL+ + + + +P Sbjct: 526 RLNVYQEITKLDSSASQSTDRPTTLKRKIETTLIVEDGNTVVIGGLIDETLSSSEYKVPC 585 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429 L IP L LF+ + E+T +++ TP +VK P+ +L + Sbjct: 586 LGDIPGLSYLFKTTSTGDEKTNLYVFLTPRVVKNPLEASELYK 628 >gi|90407251|ref|ZP_01215438.1| type IV pilus biogenesis protein PilQ [Psychromonas sp. CNPT3] gi|90311674|gb|EAS39772.1| type IV pilus biogenesis protein PilQ [Psychromonas sp. CNPT3] Length = 739 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ +A P +T Q+A G + Y S+S+GAT+V+ + L T Sbjct: 574 LSALEKENKAEIIASPRITTADQQTAYIEQGTEIPY-VESASSGATAVSFKKAVLSLQVT 632 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + +I L I + VI G S ++ T V + +G TIVL G+ + Sbjct: 633 PQITPDNKIILDLVITQDSKGDVIPTGLGQAVSINTQEIKTQVLVGNGETIVLGGIYQQR 692 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +P L IP LGALFR + ++E+ I TP LV Sbjct: 693 IIDTVQKVPFLGDIPFLGALFRTTIKENRKSELLIFVTPRLV 734 >gi|91791628|ref|YP_561279.1| type II and III secretion system protein [Shewanella denitrificans OS217] gi|91713630|gb|ABE53556.1| type II and III secretion system protein [Shewanella denitrificans OS217] Length = 683 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ +A P +T S Q A++ G + S+S+GA Sbjct: 504 FHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGA 562 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSVT + L TP + R+ L I + + G + ++ T V + Sbjct: 563 TSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLV 622 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G TIVL G+ + ++ +P+L IP +G LFRN+ E E+ I TP +V Sbjct: 623 DNGETIVLGGIYQQNLISRVSKVPILGDIPYVGFLFRNTTDKNERQELLIFVTPKIV 679 >gi|308271298|emb|CBX27906.1| hypothetical protein N47_G32300 [uncultured Desulfobacterium sp.] Length = 695 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 34/245 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---------AADFGGKFVSEGGDF 245 QV ++ TIAE+ Q G + I + G + + A+ F+SE Sbjct: 444 QVLIEATIAELTLSDDLQYGLEWYINNTLQGGAYTLGTSGNLGLSASGLAFNFISESK-- 501 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 VKG++ F+ A L+ P L I + A+ G TV+S +T Sbjct: 502 KVKGLISAFAI---------AGKTNILSTPRLMVIDNKEATIQVGED--VPTVTSQVTST 550 Query: 306 -----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 SV + GV+L PT+ + G + L + EVSE AG P +R Sbjct: 551 ESTITSTNLLQSVQYRNTGVILRVKPTINTEGLLTLELSQEVSETGEKGVAGS-PVILMR 609 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 K +TTV + G T++L GL+K+ + +P L IPI+G LF+ + + +TE+ I Sbjct: 610 KINTTVVIAQGQTLLLGGLMKEKNTTGESKVPGLGDIPIIGNLFKATSKTKNKTELIILV 669 Query: 415 TPFLV 419 TP ++ Sbjct: 670 TPTII 674 >gi|171318827|ref|ZP_02907964.1| general secretion pathway protein D [Burkholderia ambifaria MEX-5] gi|171095968|gb|EDT40901.1| general secretion pathway protein D [Burkholderia ambifaria MEX-5] Length = 775 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 12/153 (7%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336 + GQ+ +G Y ++S T + + T+D G+ LH P + G + L++ TE Sbjct: 526 VVGQNVPIATGS---YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTED 582 Query: 337 SEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S V G NA P++ R +T+ +G IVL GL++D+ Q +PLL IP +G Sbjct: 583 SAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 642 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 LFR+ R++T + + ++PV + D S Sbjct: 643 QLFRSESKQRQKTNLMV-----FLRPVIISDRS 670 >gi|170699037|ref|ZP_02890094.1| general secretion pathway protein D [Burkholderia ambifaria IOP40-10] gi|170136073|gb|EDT04344.1| general secretion pathway protein D [Burkholderia ambifaria IOP40-10] Length = 770 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 12/153 (7%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336 + GQ+ +G Y ++S T + + T+D G+ LH P + G + L++ TE Sbjct: 522 VVGQNVPIATGS---YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTED 578 Query: 337 SEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S V G NA P++ R +T+ +G IVL GL++D+ Q +PLL IP +G Sbjct: 579 SAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 638 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 LFR+ R++T + + ++PV + D S Sbjct: 639 QLFRSESKQRQKTNLMV-----FLRPVIISDRS 666 >gi|83859119|ref|ZP_00952640.1| general secretion pathway protein D [Oceanicaulis alexandrii HTCC2633] gi|83852566|gb|EAP90419.1| general secretion pathway protein D [Oceanicaulis alexandrii HTCC2633] Length = 661 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 11/190 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTT 309 F +++AL+ T L++P L + + A+ G Q + T + G+ + + Sbjct: 435 FGVIVNALDSDTDSNVLSKPQLMVLDNEEANLMVG-QEIPITTGETLGSNNSNPFRQIER 493 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--RVRKADTTVELPSGGT 367 GV L+ P + I L+I+ EVS V G + D RK +TTV G Sbjct: 494 ESVGVQLYVRPQINDGDAIRLQIRQEVSS-VAGPVSADFVELITNQRKIETTVLADDGEI 552 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRD 426 IVL GL++ D Q+ + G+P LS+IP G LFRN + + + P +V+ A MRD Sbjct: 553 IVLGGLIETDEQEAESGVPGLSRIPGAGRLFRNDSRSTTRRNLMVFIRPTIVRDAASMRD 612 Query: 427 LSRPDDHYSV 436 ++R Y+V Sbjct: 613 VTRMSYDYAV 622 >gi|117922096|ref|YP_871288.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. ANA-3] gi|117614428|gb|ABK49882.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. ANA-3] Length = 561 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 28/219 (12%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 T + +G S A GG S+KG F T++ L+ + L+ P +TA Sbjct: 328 TSAGAGLSDKITASLGGVT-----SLSIKG----SDFNTMISLLDTQGDVDVLSSPRVTA 378 Query: 280 ISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIG 329 + Q A G + T SST G T VTT G+ L TP + G + Sbjct: 379 SNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKDGNVL 438 Query: 330 LRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L + V + + + ++P +R++DT + SG +V+ GL+K + + Sbjct: 439 LHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENTE 498 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL IP++G LF+N +++TE+ I P +V Sbjct: 499 VVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537 >gi|115350108|ref|YP_771947.1| general secretion pathway protein D [Burkholderia ambifaria AMMD] gi|115280096|gb|ABI85613.1| general secretion pathway protein D [Burkholderia ambifaria AMMD] Length = 777 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 28/232 (12%) Query: 214 GFQHSITGSSSGPSKS---FAADFGGKFVSEGGD-------FSVKGV---LDRFSFETVL 260 G +SI +SG + + AA+ G +S+G + F V+G+ L F+ + Sbjct: 453 GLGNSIVNLTSGGTAATTGLAANLAG--LSQGLNIGWLHNMFGVQGLGALLQYFAGVSDA 510 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLH 317 + L I TL + GQ+ +G Y ++S T + + T+D G+ LH Sbjct: 511 NVLSTPNLI-TLDNEEAKIVVGQNVPIATGS---YSNLTSGTTSNAFNTYDRRDVGLTLH 566 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G + L++ TE S V G NA P++ R +T+ +G IVL GL++D Sbjct: 567 VKPQITDGGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQD 626 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 + Q +PLL IP +G LFR+ R++T + + ++PV + D S Sbjct: 627 NYQVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMV-----FLRPVIISDRS 673 >gi|330989446|gb|EGH87549.1| general secretion pathway protein D [Pseudomonas syringae pv. lachrymans str. M301315] Length = 778 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 8/186 (4%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G ++ G+ + + + AL+ L+ P L + ++AS G + T S T Sbjct: 526 GAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVT 585 Query: 303 GA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 G +V + G+ L+ P + G + L I EVS + R Sbjct: 586 GGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKR 645 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 DT++ L G +VL GLL+D Q E +P LS+IP+LG LFRN + +T + + Sbjct: 646 AIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFL 705 Query: 415 TPFLVK 420 P++++ Sbjct: 706 RPYIIR 711 >gi|330828668|ref|YP_004391620.1| type IV pilus secretin PilQ [Aeromonas veronii B565] gi|328803804|gb|AEB49003.1| Type IV pilus secretin PilQ [Aeromonas veronii B565] Length = 741 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ + +A P +T + Q + G + SSS+GA Sbjct: 562 FQVARLADGTLLDLELSALEKESKAEIIASPRVTT-ANQKPALIEQGTEIPYVESSSSGA 620 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSVT + L TP + R+ L + + + GD S + T V + Sbjct: 621 TSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDAVSINAQSITTQVLV 680 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G T+VL G+ + I+ +PLL IP LGALFR + ++ E+ I TP +V Sbjct: 681 NNGETLVLGGIYQQTIKSDVTKVPLLGDIPGLGALFRKTTSENKKRELLIFVTPKIV 737 >gi|229591502|ref|YP_002873621.1| general secretion pathway protein D [Pseudomonas fluorescens SBW25] gi|229363368|emb|CAY50509.1| general secretion pathway protein D [Pseudomonas fluorescens SBW25] Length = 740 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSSTGATSVTT 309 + + LHALE + L+ P+L ++ Q A G Q T +S T +SV Sbjct: 543 NLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTSDTTLSSVEY 602 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS+ ++ + P R T V + SG Sbjct: 603 VQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASSSNDTQNNPRISTRSVSTQVAVQSG 662 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF N+ +++ TE+ + TP ++ Sbjct: 663 QTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVI 716 >gi|84390819|ref|ZP_00991511.1| fimbrial assembly protein [Vibrio splendidus 12B01] gi|84376622|gb|EAP93499.1| fimbrial assembly protein [Vibrio splendidus 12B01] Length = 564 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GATSV + L T Sbjct: 402 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVT 460 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 461 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 520 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 521 VSSTVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPKVV 562 >gi|78223066|ref|YP_384813.1| type II and III secretion system protein [Geobacter metallireducens GS-15] gi|78194321|gb|ABB32088.1| type II and III secretion system protein [Geobacter metallireducens GS-15] Length = 861 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 99/392 (25%), Positives = 170/392 (43%), Gaps = 61/392 (15%) Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHD--GKQMLNLDILIERDIAHLEMTLRRFIADSN 135 D + T+YL N QA +L + GK++LN E T+ F + Sbjct: 212 DTIKDQKVTIYLENANFQQALDLLTNMNKLGKKVLN------------ESTILIF-PKTP 258 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM-----NLLNI 190 + + D VV + T+ D+++AV L T L R Y N ++ L+++ Sbjct: 259 EKSKQYEDLVVKTFFLNTL-DAKKAVNLLRTMLQV--RKVYVNEELNAIVVRDTSELVDV 315 Query: 191 AG---------EDQVTLKVTIAEVRRDILKQIGF---QHSITGSSSGPSKSFAAD-FGGK 237 AG + +V L V + EV + ++ G +++++ ++ P F D F Sbjct: 316 AGKILEANDVPDAEVLLDVEVIEVSKRNIENFGLALSKYAVSLNTQTPGGGFLNDTFSRA 375 Query: 238 FVSEGGDFSVKG-----VLDRFS------FETVLHAL----ERATAIRTLAEPTLTAISG 282 VS +++G +L FS F TV A + T LA P + + Sbjct: 376 SVSSSTGTTIQGTAGSELLQTFSWNGYSGFMTVPSASYSFGKSITNAEVLANPKIRVKNR 435 Query: 283 QSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + + FT G + T ++ + +V D GV L+ PT++ + +++ EVS Sbjct: 436 EKSKFTVGTRVPITTTSTTGTTGGFSVNVQYVDVGVKLNAEPTIMLNNEVSIKLGLEVSS 495 Query: 339 PVIGVNAGDMPSYRV------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + G S R DT + L G T V+ GL++D+ Q+ K+ I LL IP Sbjct: 496 IIDKQTVGGTDSATTVVTIGTRNLDTVLNLKDGETSVIGGLIEDNKQKGKQKIFLLGDIP 555 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 I+G L N+ + ++ E+ +A TP LV+ V + Sbjct: 556 IIGPLLSNNSNDNQKRELILAITPRLVRSVTV 587 >gi|56478233|ref|YP_159822.1| general secretory pathway protein D [Aromatoleum aromaticum EbN1] gi|56314276|emb|CAI08921.1| general secretory pathway protein D [Aromatoleum aromaticum EbN1] Length = 719 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 74/282 (26%), Positives = 117/282 (41%), Gaps = 45/282 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSF--AADFGGK------------FV 239 QV ++ IAE+ + + G Q S +G S +F +FGG V Sbjct: 381 QVYIEALIAEISTERAAEFGIQWQSANTPGAGSSSTFFGGTNFGGAGQNIIGAAQNIGSV 440 Query: 240 SEGGDFSVKG----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +G +F + G +++ F+ + LE + L+ P+L + + A Sbjct: 441 GKGMNFLLGGGTVKVPINGQMVEVFNLSLLARFLETDSRTNILSTPSLVTLDNEGAKIVV 500 Query: 290 G-------GQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 G GQ+ T +T A T D G+ L P + G I L I E S Sbjct: 501 GRNLPFITGQY-TNTGGGTTPANPFQTIERRDVGLTLEVRPQISEGGAIRLDIYQEASSV 559 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V ++ P+ R +TV + G I L GL++DD +E +PLL IP G+LFR Sbjct: 560 VPTLDDSAGPTTNKRSIQSTVLVDDGAIIALGGLVEDDYSSGEEKVPLLGDIPFAGSLFR 619 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 R +T + + ++PV +RD D YS +A+ Sbjct: 620 YDTRRRTKTNLVV-----FLRPVILRD----RDSYSTITNAR 652 >gi|171319027|ref|ZP_02908154.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] gi|171095782|gb|EDT40735.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] Length = 633 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 12/234 (5%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFGG--KFVSEGGDFSVK 248 V ++ I +V+ LK+IGF ++ GS S+ D G + G +FS+ Sbjct: 330 VQIEAAIIDVQDGALKEIGFDWALQGSQFRIASTTSGAGIGRDLGNADRVRGNGPNFSIF 389 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G SF + +HAL+ L+ P L ++G A T+ Q ++ S+ + Sbjct: 390 GGSSALSFLSRIHALQTEGKASVLSRPKLATLNGIEAVLTN--QQVFYPRVSNERVAQLY 447 Query: 309 THDYGVVLHFTPTVL--SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL-PSG 365 D G+ + P V+ S G+ +R+Q + + +G D + A TT L +G Sbjct: 448 QVDVGLQMRVVPAVVRRSDGKADIRLQVFIEDGSLGSQRVDGLPVTSKSAITTQALVRNG 507 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++++ G ++D + + +PLL IP+LGALFR + E TP L+ Sbjct: 508 ESLLIGGYVRDVNDRGEAKVPLLGDIPLLGALFRFRSTQTDRQERLFLITPKLL 561 >gi|238783115|ref|ZP_04627141.1| Protein transporter HofQ [Yersinia bercovieri ATCC 43970] gi|238715911|gb|EEQ07897.1| Protein transporter HofQ [Yersinia bercovieri ATCC 43970] Length = 405 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L A Q+AS G Y GA S+ + + + TP +L G+I L Sbjct: 254 IASPRLVASHLQTASIKQGSDIPYAVARGDKGAVSIEFKEAVLGMEVTPKILRNGKITLN 313 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P + + GD + + K + T + + G TIVL G+ + Q +P+L+ Sbjct: 314 LKISQNMPGMTIKRGDTEALLIDKQEIKTQITVNDGETIVLGGIFQQKNNQAVNKVPILA 373 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP LGALF+ + E+ I TP L+ Sbjct: 374 DIPWLGALFKQDTKQQSRRELVIFITPRLI 403 >gi|157960066|ref|YP_001500100.1| type IV pilus secretin PilQ [Shewanella pealeana ATCC 700345] gi|157845066|gb|ABV85565.1| type IV pilus secretin PilQ [Shewanella pealeana ATCC 700345] Length = 688 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 102/248 (41%), Gaps = 24/248 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSF--AADFGGKFVSEGGD------ 244 QV ++ + V+ D+ + +G + +T G S S A D V D Sbjct: 438 QVLIEARMVTVKDDVSEDLGVRWGVTDQQGDKGTSGSLEGAGDIANGIVPSLSDRLNVNL 497 Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F V + D + L ALE+ +A P +T S Q A+F G Sbjct: 498 PAAVANPTSIAFHVAKLADGTVLDLELSALEQENKGEIIASPRITT-SNQKAAFIEQGVE 556 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSY 351 + +SS+GAT+VT + L TP + R+ L I + + G S Sbjct: 557 IPYVEASSSGATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGQAVSI 616 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ T V + G TIVL G+ + + +P+L IP LG +FR++ E E+ Sbjct: 617 DTQRIGTQVLVDHGETIVLGGIYQQQLISRVSKVPILGDIPYLGFMFRSTSDKNERQELL 676 Query: 412 IAATPFLV 419 I TP +V Sbjct: 677 IFVTPKIV 684 >gi|154174515|ref|YP_001408333.1| type II and III secretion system protein [Campylobacter curvus 525.92] gi|153793105|gb|EAU00522.2| type II and III secretion system protein [Campylobacter curvus 525.92] Length = 506 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 112/243 (46%), Gaps = 28/243 (11%) Query: 212 QIGFQHSITGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 ++GF + G + PS + + G G G ++ L+ FS + +++ LE + Sbjct: 257 ELGFNSYLGGDPTKPSNAGWNNRGNGLSAGFGQTLNIAANLN-FSLDGMMNFLETNGKAK 315 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV------TTHDY----GVVLHFTP 320 ++ P +T ++ Q A + G Y+ + + A ++ T Y G++L+ P Sbjct: 316 VISSPKVTTLNNQQALISVGDNINYRVMEQTDSANALNDRVKTTYKQYSVFIGILLNLLP 375 Query: 321 TVLSPGRIGLRIQTEVS------EPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLA 371 V +I LRI +S + V N P +K T V++ SG TIVL Sbjct: 376 EVSDNNKIMLRINPSLSSFKYQEDDVRAQNTNIREIAPDTIQKKLSTVVQVNSGDTIVLG 435 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-----KPV--AM 424 GL+ + +P+L+ IP+LG F++++ + TE+ TP +V KPV ++ Sbjct: 436 GLIGQTKNKQNTAVPILADIPLLGNAFKSTKDAVKTTELIFVITPRVVDLDGAKPVQQSL 495 Query: 425 RDL 427 +DL Sbjct: 496 KDL 498 >gi|330502644|ref|YP_004379513.1| general secretion pathway protein D [Pseudomonas mendocina NK-01] gi|328916930|gb|AEB57761.1| general secretion pathway protein D [Pseudomonas mendocina NK-01] Length = 647 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 15/151 (9%) Query: 282 GQSASFTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 GQ+ F +G Y T +S G T++ D GV L TP + + L I+ E+S Sbjct: 455 GQNVPFQTGS---YTTDASGAGNPFTTIERKDIGVTLKVTPHINEGATLRLEIEQEISSI 511 Query: 339 -PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 P G+NA D+ + + R +T+ G IVL GL++DD+ Q +PLL IP+LG Sbjct: 512 APSTGLNAQAVDLVTNK-RSIKSTILADDGQVIVLGGLIQDDVTQATSKVPLLGDIPLLG 570 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LFR++R + + + + ++P +RD Sbjct: 571 GLFRSTRDSHIKRNLMV-----FLRPTVVRD 596 >gi|86147328|ref|ZP_01065642.1| fimbrial assembly protein [Vibrio sp. MED222] gi|85834893|gb|EAQ53037.1| fimbrial assembly protein [Vibrio sp. MED222] Length = 564 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GATSV + L T Sbjct: 402 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVT 460 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 461 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 520 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 521 VSSQVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPKVV 562 >gi|158520346|ref|YP_001528216.1| type IV pilus secretin PilQ [Desulfococcus oleovorans Hxd3] gi|158509172|gb|ABW66139.1| type IV pilus secretin PilQ [Desulfococcus oleovorans Hxd3] Length = 987 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 124/290 (42%), Gaps = 40/290 (13%) Query: 165 ETFLSQSGRNQYANSSSKKVMNLLN---------IAGEDQVT----LKVTIAEVRRDILK 211 E LS G + N +++ +M + IA D+VT +K I E + Sbjct: 702 EGLLSDRGHAKVDNRTNQVIMTDVEEKVEKAREIIAKIDKVTPQVMIKARIVETSSSFSR 761 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSE-GGDFSVKGVLDR----------------- 253 + G + I + P+ + D G + E GG ++ L+ Sbjct: 762 EFGTEWGIDNRYNSPNINIGTD--GAYRDEMGGTYTYDVALNSLSSPVQNLIGINFARII 819 Query: 254 ---FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 FS + L +E ++ ++ P + + ++A+ + G + Y V T Sbjct: 820 GTPFSLDAKLSLMESTGDVKIISTPKVVTLDNKTATISQGIDYPYTVVEDGEADVKWKTI 879 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 D L TP V RI +++ + ++ +G S+ ++A T + + G T+V+ Sbjct: 880 DLN--LDVTPHVTPDDRISMKLNIQKND--VGEIINGEQSFNTKRASTELLVNDGDTVVI 935 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G++K+ + G+P +SKIP+LG LF+ + E++E+ I TP +V+ Sbjct: 936 GGIIKEREGAGERGVPWISKIPVLGNLFKYKTRSDEKSELLIFITPNVVR 985 >gi|283781428|ref|YP_003372183.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283439881|gb|ADB18323.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 1314 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 16/181 (8%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTT-H 310 S ++ AL+++ ++ ++ P + + Q A F G + + SS G + T Sbjct: 906 SVSVLVRALQQSRRLQVISRPQVQTLDNQPA-FVQVGARVPRITSSQLTVNGTINNTVLE 964 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDM---PSYRVRKADTT 359 + G++L TP G I + I E SE P+ + GD+ P R+ A TT Sbjct: 965 NVGIILGVTPRTAPDGMIVMEIDAEKSELGPEAEGIPISINSNGDVIRSPQIRIATAQTT 1024 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V SG T+++ GL+ + Q+ +P L IP+LG LFR + E E+ I TPF++ Sbjct: 1025 VSARSGQTVIIGGLITKNQQESTRRVPYLGDIPVLGRLFRFDSVSDERRELLIILTPFIM 1084 Query: 420 K 420 + Sbjct: 1085 Q 1085 >gi|218710790|ref|YP_002418411.1| type IV pilus assembly protein PilQ [Vibrio splendidus LGP32] gi|218323809|emb|CAV20166.1| type IV pilus assembly protein PilQ [Vibrio splendidus LGP32] Length = 572 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GATSV + L T Sbjct: 410 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVT 468 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 469 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 528 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 529 VSSQVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPKVV 570 >gi|167947465|ref|ZP_02534539.1| general secretion pathway protein D [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 241 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 33/240 (13%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVLDRF-- 254 ++ IAEV D K +G Q + GS SG + + G +S+ + GVL Sbjct: 3 VEAIIAEVSFDKTKDLGVQWIVDGSPSGNTAPVGIINLGTPKISDIAGAAAAGVLPSIPS 62 Query: 255 -----------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F ++ ALE ++ L+ P++ + Q A + T Sbjct: 63 GTLIGLGKFFXPPGSGVDFAMLIRALESDSSSNILSTPSILTLDNQEAEIVVAKNVPFLT 122 Query: 298 VS-SSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG 346 +STGA+S + + D G+ L TP + I L I+ EVS +P Sbjct: 123 GQYASTGASSTSVNPFQTIQRQDVGLTLRVTPQINEGNAIQLSIEQEVSSIDPTTSAGTT 182 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+ + + R T V + TIVL GL+ + +QQ+ E +PLL IP +G LFR +R N++ Sbjct: 183 DIVTNK-RTIKTVVMVEDSHTIVLGGLIDEQLQQVDERVPLLGDIPGVGVLFR-ARNNQQ 240 >gi|121997138|ref|YP_001001925.1| pilus (MSHA type) biogenesis protein MshL [Halorhodospira halophila SL1] gi|121588543|gb|ABM61123.1| pilus (MSHA type) biogenesis protein MshL [Halorhodospira halophila SL1] Length = 538 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 26/190 (13%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----------VSSSTGAT 305 FE L ALE+ ++ L+ P ++ ++ Q A +G Y+T V T Sbjct: 326 FEGFLRALEQQGDVQVLSTPQVSTLNNQKAVIKAGTDSFYQTDFSINYRTVEVGGQTTTQ 385 Query: 306 SVTTHDY-----GVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGD------MP 349 D+ G+ L TP + G I L +Q V+E + GD + Sbjct: 386 PELDPDFEPFFSGIALDVTPQIEESGWINLHVQPSVTEVRERERTLRTGRGDDEVRFSLA 445 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 VR++D+ V SG IV+ GL+++ QQ +PLL ++P+LG LF R + E Sbjct: 446 ESDVRQSDSIVRARSGEMIVIGGLIEEREQQETSRVPLLGRVPLLGWLFTQERQESSKYE 505 Query: 410 IFIAATPFLV 419 + I P +V Sbjct: 506 LVILLRPRVV 515 >gi|87309468|ref|ZP_01091603.1| Type IV pilin multimeric outer membrane protein [Blastopirellula marina DSM 3645] gi|87287776|gb|EAQ79675.1| Type IV pilin multimeric outer membrane protein [Blastopirellula marina DSM 3645] Length = 719 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 4/174 (2%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--KTVSSSTGATS 306 G LD S + ALE +A P L ++ Q A G Q Y TV+ + S Sbjct: 396 GFLDS-SLGVFIDALESFGDTSVIASPQLLVLNKQRAEILIGEQKGYISTTVTETASTQS 454 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSG 365 V + G L P + G + L + E+S+ + V +P+ V + T V P G Sbjct: 455 VEFLEIGTQLRLRPFITDDGMVRLEVHPEISDGDVKVEGQFTLPNKIVTQVTTNVICPDG 514 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 TI++ GL+K D+++ IP L IPILG FR + E+ + TP +V Sbjct: 515 RTIIIGGLIKSDLRKKGSQIPYLGSIPILGPAFRQKQETTVRDELIVLLTPRIV 568 >gi|312961914|ref|ZP_07776411.1| general secretion pathway protein D [Pseudomonas fluorescens WH6] gi|311283724|gb|EFQ62308.1| general secretion pathway protein D [Pseudomonas fluorescens WH6] Length = 740 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSSTGATSVTT 309 + + LHALE + L+ P+L ++ Q A G Q T +S T +SV Sbjct: 542 NLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTSDTTLSSVEY 601 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPS---YRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS+ + GD P+ R T V + SG Sbjct: 602 VQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASTNGDTPANPRISTRSVSTQVAVQSG 661 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D +P L KIP L LF ++ +++ TE+ + TP ++ Sbjct: 662 QTVLLGGLIKQDNADTVSAVPYLGKIPGLRWLFGSTSKSKDRTELIVLITPRVI 715 >gi|325275690|ref|ZP_08141579.1| general secretion pathway protein D [Pseudomonas sp. TJI-51] gi|324099176|gb|EGB97133.1| general secretion pathway protein D [Pseudomonas sp. TJI-51] Length = 613 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 122/274 (44%), Gaps = 24/274 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------ADFGGKFVSEGGDFSVK 248 QV + I EV I + +G Q + +F+ AD GK G ++ Sbjct: 333 QVLIHAAIVEVSGSIDEALGVQWGVGTGGLNGGVTFSESGTGLADLLGKEAKLPGGAALA 392 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---VSSSTGA- 304 DRF+ ++ AL ++ L+ P+L + Q A G +KT V+ +G+ Sbjct: 393 IGTDRFA--ALISALASSSRSNLLSTPSLLTLDNQEAHILVGQNVAFKTGSYVTPGSGSE 450 Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 T+V D G+ L P + + L ++ E SE D+ + + R +T+ Sbjct: 451 NPFTTVERKDIGISLKVRPHINEGQSLRLEVEQESSEIAPSTAENDLITNK-RTLKSTIL 509 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G IV+ GL+KD ++Q++ G+PLLS+IP LG LFR +E+T + + P +++ Sbjct: 510 ASDGEIIVIGGLIKDSMRQVERGVPLLSRIPWLGGLFRWRSDIQEKTNLMVFLRPTILRS 569 Query: 422 VAMR--------DLSRPDDHYSVEDDAKAFFFNR 447 A R D R D + DA+ F R Sbjct: 570 QAERVEVGRRAYDGVRAADDSPLPADAQRLFEPR 603 >gi|34979599|gb|AAQ83844.1| type IV pilus biogenesis secretin PilQ precursor [Legionella pneumophila 130b] gi|307609724|emb|CBW99235.1| type IV pilus [Legionella pneumophila 130b] Length = 698 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 2/168 (1%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D + L ALE ++ P L + Q+A SG + Y+ +SS GAT+V Sbjct: 515 DNILLDLELSALESEGRAELISSPRLITTNQQAAVIESGEEIPYQEATSS-GATAVAFKK 573 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + L TP + G+I + +Q P G +P+ ++ T V + +G TIVL Sbjct: 574 AVLSLKVTPQITPDGKILMDLQINQDTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLG 632 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ K D ++ IP ++P++G LF N + + E+ I TP ++ Sbjct: 633 GIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680 >gi|54296952|ref|YP_123321.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila str. Paris] gi|53750737|emb|CAH12144.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila str. Paris] Length = 698 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 2/168 (1%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D + L ALE ++ P L + Q+A SG + Y+ +SS GAT+V Sbjct: 515 DNILLDLELSALESEGRAELISSPRLITTNQQAAVIESGEEIPYQEATSS-GATAVAFKK 573 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + L TP + G+I + +Q P G +P+ ++ T V + +G TIVL Sbjct: 574 AVLSLKVTPQITPDGKILMDLQINQDTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLG 632 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ K D ++ IP ++P++G LF N + + E+ I TP ++ Sbjct: 633 GIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680 >gi|74317457|ref|YP_315197.1| type II secretion system protein D [Thiobacillus denitrificans ATCC 25259] gi|74056952|gb|AAZ97392.1| type II secretion system protein D [Thiobacillus denitrificans ATCC 25259] Length = 656 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 105/400 (26%), Positives = 175/400 (43%), Gaps = 54/400 (13%) Query: 53 GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL 112 GLN V V +D + L + T D V K V AN +LI D Q Sbjct: 204 GLNFVFDKDVRLDTKATLFARNTPIDEAVDMLLMTGQLSKKVVNANTLLIYPDQPQ---- 259 Query: 113 DILIERDIAHLEMTLRRFI---ADSNIRVEMVSDTVV---LHGMVR----TIQDSQRAVE 162 + A+ E+ ++ F AD+ + M+ V LH R ++D+ A+ Sbjct: 260 -----KQKAYQELMVKSFYLGNADAKATMAMLRTLVKAKDLHVDERLNLLVMRDTPDAIR 314 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 L+E ++ V +L E +V L+V + EV+R L +G Q+ S Sbjct: 315 LAERIVA--------------VQDL----AEPEVMLEVEVLEVKRGRLLDLGIQYPTNFS 356 Query: 223 --SSGPSKSFAADFGGKFVSEGGDFSVKGV--LDRFSFETV-------LHALERATAIRT 271 + P+ S GG + SV V L + + + ++ + + Sbjct: 357 LLNLPPATSSTIGPGGVVTNTTPPPSVLTVESLKNITASQIAISPTPGVDLRKQDSDVNI 416 Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328 LA P + + + A G + + + ++STG + SV+ D G+ L P+VL + Sbjct: 417 LANPRIRVKNREKAKIHIGDKVPVITSNTTSTGVVSESVSYLDVGLKLDVEPSVLMREDV 476 Query: 329 GLRIQTEVSEPVIGVNAGD-MPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +R+ EVS V + +G+ +Y++ R A TT+ L G T VLAGL+ D+ + I Sbjct: 477 QIRVGLEVSNIVREIRSGNGTLTYQIGTRNAGTTLRLKDGETQVLAGLISDEDRSTASRI 536 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 P L +P++G LF + R R +TEI + TP +++ A R Sbjct: 537 PGLGDLPLIGRLFSSQRDERNKTEIVLLITPRVLRSDATR 576 >gi|319761508|ref|YP_004125445.1| general secretion pathway protein d [Alicycliphilus denitrificans BC] gi|330823377|ref|YP_004386680.1| general secretion pathway protein D [Alicycliphilus denitrificans K601] gi|317116069|gb|ADU98557.1| general secretion pathway protein D [Alicycliphilus denitrificans BC] gi|329308749|gb|AEB83164.1| general secretion pathway protein D [Alicycliphilus denitrificans K601] Length = 777 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 16/187 (8%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGA------- 304 ++ + + LE L+ P L + + A G + T S ++TG Sbjct: 517 KYYLGALANFLENTGDANVLSTPNLLTLDNEEAQIIIGNNVPFPTGSYANTGGNGGAVNP 576 Query: 305 -TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTT 359 T+V D G++L PT+ G + L + EVS+ + VN PS R ++T Sbjct: 577 FTTVERKDVGLMLRVRPTINENGTVKLTLYQEVSKVNESTLTNVNG---PSTSKRSIEST 633 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + G IVL GLL+D ++ +P++ +P+LGALFRN +R++T + + P ++ Sbjct: 634 VLVDDGSVIVLGGLLEDSYSLNQDKVPVMGDLPVLGALFRNENRSRKKTNLMVFLRPMVI 693 Query: 420 KPVAMRD 426 + A D Sbjct: 694 RDNATSD 700 >gi|52841166|ref|YP_094965.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628277|gb|AAU27018.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 698 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 2/168 (1%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D + L ALE ++ P L + Q+A SG + Y+ +SS GAT+V Sbjct: 515 DNILLDLELSALESEGRAELISSPRLITTNQQAAVIESGEEIPYQEATSS-GATAVAFKK 573 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + L TP + G+I + +Q P G +P+ ++ T V + +G TIVL Sbjct: 574 AVLSLKVTPQITPDGKILMDLQINQDTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLG 632 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ K D ++ IP ++P++G LF N + + E+ I TP ++ Sbjct: 633 GIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680 >gi|54293906|ref|YP_126321.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila str. Lens] gi|53753738|emb|CAH15196.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila str. Lens] Length = 698 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 2/168 (1%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D + L ALE ++ P L + Q+A SG + Y+ +SS GAT+V Sbjct: 515 DNILLDLELSALESEGRAELISSPRLITTNQQAAVIESGEEIPYQEATSS-GATAVAFKK 573 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + L TP + G+I + +Q P G +P+ ++ T V + +G TIVL Sbjct: 574 AVLSLKVTPQITPDGKILMDLQINQDTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLG 632 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ K D ++ IP ++P++G LF N + + E+ I TP ++ Sbjct: 633 GIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680 >gi|238797288|ref|ZP_04640789.1| Protein transporter HofQ [Yersinia mollaretii ATCC 43969] gi|238718925|gb|EEQ10740.1| Protein transporter HofQ [Yersinia mollaretii ATCC 43969] Length = 406 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 6/152 (3%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L A Q+AS G Y GA S+ + + + TP +L G+I L Sbjct: 255 IASPRLVASHQQTASIKQGSDIPYTVSRGEKGAASIEFKEAVLGMEVTPKILRNGKITLN 314 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P + + GD + + K + T + + G TIVL G+ + Q +P+L+ Sbjct: 315 LKISQNMPGMTIKRGDTEALLIDKQEIKTQITVNDGETIVLGGIFQQKNSQAVNKVPILA 374 Query: 390 KIPILGALFRN--SRFNREETEIFIAATPFLV 419 IP LGALF+ + NR E IFI TP L+ Sbjct: 375 DIPWLGALFKQDAQQQNRRELVIFI--TPRLI 404 >gi|170724709|ref|YP_001758735.1| type IV pilus secretin PilQ [Shewanella woodyi ATCC 51908] gi|169810056|gb|ACA84640.1| type IV pilus secretin PilQ [Shewanella woodyi ATCC 51908] Length = 682 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 23/247 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSF--AADFGGKFVSEGGD------ 244 QV ++ + V+ D+ + +G + I+ S G S S A D + D Sbjct: 433 QVLIEARMVTVKDDVSEDLGIKWGISDKQGSKGTSGSIGGAQDIANGIIPSVNDRLNVNF 492 Query: 245 ----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 F V + D + L ALE+ +A P +T S Q A++ G + Sbjct: 493 PAPEAAASIAFHVAKLADGTILDMELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEI 551 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYR 352 +SS+GA +V+ + L TP + R+ L I + V+ G++ S Sbjct: 552 PYVEASSSGAATVSFKKAVLSLRVTPQITPDNRVILDLEISQDSQGKVVATPLGEVVSID 611 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 ++ T V + G TIVL G+ + ++ +P+L IP +G LFR++ E E+ I Sbjct: 612 TQRIGTQVLVDHGETIVLGGIYQQNLISRVSKVPVLGDIPFVGFLFRSTSDKNERQELLI 671 Query: 413 AATPFLV 419 TP ++ Sbjct: 672 FVTPKII 678 >gi|312879791|ref|ZP_07739591.1| general secretion pathway protein D [Aminomonas paucivorans DSM 12260] gi|310783082|gb|EFQ23480.1| general secretion pathway protein D [Aminomonas paucivorans DSM 12260] Length = 648 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 7/164 (4%) Query: 263 LERATAIRTLAEPTLTAISGQSASFTSG------GQHLYKTVSSSTGATSVTTHDYGVVL 316 L R AI L+ P + +S G L + + S +S D G++L Sbjct: 445 LNRFDAINVLSMPRIMCTDNLESSLQVGQVIPQLKGKLSEVNNPSAVQSSYEYKDTGLIL 504 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP + S + L I+ + E V+ + D P+ R+ T V + +G TI+L G++K+ Sbjct: 505 KVTPHIRSGNLVALEIEQRIEE-VLTASTVDTPTTTKREIKTNVLVENGQTIILGGIIKE 563 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +K +P LS IP+LG LF ++ RE+ ++ I TP++++ Sbjct: 564 AEKSMKSRVPGLSYIPLLGNLFTSTVKQREKVDLMIFLTPYILE 607 >gi|187476847|ref|YP_784871.1| general secretion pathway protein D [Bordetella avium 197N] gi|115421433|emb|CAJ47938.1| general secretion pathway protein D [Bordetella avium 197N] Length = 860 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 112/261 (42%), Gaps = 40/261 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSF------------------AADFG 235 QV ++ I EV D + G Q G+ + S SF + D Sbjct: 416 QVLVESMIVEVSEDKASEFGIQWMTGAGNINSNSTSFIGGTNLGGSGLGGVQGPTSLDVL 475 Query: 236 GKFVSEGGDFSVKGVLDRFSFETV-----LHALERATAIRTLAEPTLTAISGQSASFTSG 290 GK +S G VKG +D + + A+++ L+ P L + QSAS G Sbjct: 476 GKGLSLG---VVKGTVDVLGNKVINLGVLARAMQKDGEANILSTPNLLTLDNQSASILVG 532 Query: 291 -------GQHLYKTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 GQ++ + S+ ++ D G+ L+ P + G + L I EVS I Sbjct: 533 KTVPFVTGQYVTSGGNGSSNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQEVSS--ID 590 Query: 343 VNAGDMPSYRV---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + S V R DT+V + G IVL GLL+D + Q G+P LS IPILGALFR Sbjct: 591 TSNSTAVSGVVTNKRAIDTSVLVEDGQIIVLGGLLEDSVSQGANGVPGLSSIPILGALFR 650 Query: 400 NSRFNREETEIFIAATPFLVK 420 +T + + P++V+ Sbjct: 651 YDSRRHTKTNLMVFLRPYVVR 671 >gi|145298152|ref|YP_001140993.1| type IV pilus biogenesis protein TapQ [Aeromonas salmonicida subsp. salmonicida A449] gi|142850924|gb|ABO89245.1| type IV pilus biogenesis protein TapQ [Aeromonas salmonicida subsp. salmonicida A449] Length = 693 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ + +A P +T + Q + G + SSS+GA Sbjct: 514 FQVARLADGTLLDLELSALEKESKAEIIASPRVTT-ANQKPALIEQGTEIPYVESSSSGA 572 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSVT + L TP + R+ L + + + GD S + T V + Sbjct: 573 TSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDAVSINAQSITTQVLV 632 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G T+VL G+ + I+ +PLL IP LG LFR + ++ E+ I TP +V Sbjct: 633 NNGETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSENKKRELLIFVTPKIV 689 >gi|254186538|ref|ZP_04893055.1| general secretion pathway protein D [Burkholderia pseudomallei Pasteur 52237] gi|157934223|gb|EDO89893.1| general secretion pathway protein D [Burkholderia pseudomallei Pasteur 52237] Length = 316 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%) Query: 272 LAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD---YGVVLHFTPTV 322 L+ P L + + A G Q++ Y ++S T A + T+D G+ LH P + Sbjct: 66 LSTPNLVTLDNEEAKIVVG-QNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQI 124 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 G + L++ TE S V G N P++ R +TV +G IVL GL++D+ Sbjct: 125 TEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNY 184 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q +PLL IP +G LFR+ R++T + + ++PV + D + Sbjct: 185 QVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RE 229 Query: 439 DAKAFFFNRVNKIYG 453 A+A NR + I G Sbjct: 230 TAQAVTSNRYDYIQG 244 >gi|119773310|ref|YP_926050.1| type II and III secretion system protein [Shewanella amazonensis SB2B] gi|119765810|gb|ABL98380.1| type II and III secretion system protein [Shewanella amazonensis SB2B] Length = 703 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 17/179 (9%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGAT----SVTT 309 F ++ A+ T LA P++T + Q A+F G + L +SS G + +V Sbjct: 452 FGALIQAVSSDTNSNVLATPSITTLDNQEAAFIVGDEVPVLTGAQNSSNGNSNPFQTVER 511 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGT 367 + GV L TP + + L I+ EVS G+N G ++ R+ TTV SG Sbjct: 512 KEVGVKLKVTPQINEGNAVKLAIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQI 567 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +VL GL+ +++Q+ + +P+L IP+LG LF++S +++ + + +KP +RD Sbjct: 568 VVLGGLINEEVQESVQKVPILGDIPLLGHLFKSSSSGKKKKNLMV-----FIKPTIIRD 621 >gi|104781447|ref|YP_607945.1| type II secretion system protein XcpQ-2; signal peptide [Pseudomonas entomophila L48] gi|95110434|emb|CAK15142.1| putative type II secretion system protein XcpQ-2; putative signal peptide [Pseudomonas entomophila L48] Length = 787 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 111/262 (42%), Gaps = 29/262 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKFVSEG----------- 242 QV ++ I EV D + G Q + G + F A+ GG + +G Sbjct: 471 QVVVESLIVEVGEDDANEFGIQWQ--AGNLGKNGLFGGANLGGSGLGKGPTSIDVLPPGL 528 Query: 243 ------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG------ 290 G + GV + + AL+ L+ P L + ++AS G Sbjct: 529 SVGVVDGTVKIPGVGAVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 588 Query: 291 -GQHLYKTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 GQ++ +S ++ + G+ L+ P + G + L + EVS ++ Sbjct: 589 SGQYVTDGGGNSNNPFQTIQREEVGLRLNVRPQISEGGTVKLDVYQEVSSVDQRASSAAG 648 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R DT++ L G +VL GLL+D Q EGIP LS +P +GALFR+ R +T Sbjct: 649 TVTNKRAIDTSILLDDGQIMVLGGLLQDGYTQSNEGIPWLSSLPGVGALFRSERRASNKT 708 Query: 409 EIFIAATPFLVKPV-AMRDLSR 429 + + P++V+ A R ++R Sbjct: 709 NLMVFLRPYIVRDANAGRSITR 730 >gi|71280718|ref|YP_271238.1| general secretion pathway protein D [Colwellia psychrerythraea 34H] gi|71146458|gb|AAZ26931.1| general secretion pathway protein D [Colwellia psychrerythraea 34H] Length = 697 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 10/186 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A+ T LA P++T + + A F G Q + S+TG+ +V Sbjct: 448 WGAIVSAVSSDTNSNILATPSITTLDNEEAYFIVG-QEVPIITGSATGSNNANPFQTVDR 506 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + G+ L TP V + L I+ EVS V G D+ S R+ TTV SG T++ Sbjct: 507 QEVGIKLRVTPQVNEGNAVQLIIEQEVSS-VSGTTGVDI-SINKREIKTTVMADSGDTVI 564 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLS 428 L GL+ +D+Q+ + +P+L IPI+G LF+++ + + + + +V+ A M ++S Sbjct: 565 LGGLIDEDVQESVQKVPILGDIPIIGHLFKSTSNSTRKRNLMVFLRATIVRDSALMTEIS 624 Query: 429 RPDDHY 434 +Y Sbjct: 625 ESKYNY 630 >gi|148360420|ref|YP_001251627.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila str. Corby] gi|296106514|ref|YP_003618214.1| type IV pilus assembly protein PilQ [Legionella pneumophila 2300/99 Alcoy] gi|148282193|gb|ABQ56281.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila str. Corby] gi|295648415|gb|ADG24262.1| type IV pilus assembly protein PilQ [Legionella pneumophila 2300/99 Alcoy] Length = 698 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 2/168 (1%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D + L ALE ++ P L + Q+A SG + Y+ +SS GAT+V Sbjct: 515 DNILLDLELSALESEGRAELISSPRLITTNQQAAVIESGEEIPYQEATSS-GATAVAFKK 573 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + L TP + G+I + +Q P G +P+ ++ T V + +G TIVL Sbjct: 574 AVLSLKVTPQITPDGKILMDLQINQDTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLG 632 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ K D ++ IP ++P++G LF N + + E+ I TP ++ Sbjct: 633 GIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680 >gi|254498863|ref|ZP_05111570.1| putative MSHA biogenesis protein MshL (pilus type IV) [Legionella drancourtii LLAP12] gi|254351917|gb|EET10745.1| putative MSHA biogenesis protein MshL (pilus type IV) [Legionella drancourtii LLAP12] Length = 578 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 76/331 (22%), Positives = 140/331 (42%), Gaps = 64/331 (19%) Query: 123 LEMTLRRFIADS---NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 L++TL+ I + ++ V V+ VV++ R ++ +R +++ + + + Sbjct: 227 LQLTLQNMIGKTGGRSVTVNPVAGLVVVYAAPRELKQVERYLDMVQNSMDR--------- 277 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF------AAD 233 QV L+ I EV + Q+G + G+S +F AD Sbjct: 278 ---------------QVILEAKILEVNLNNQFQMGINWKLFGASLNALSNFPEVDIAQAD 322 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F F D V + F +V+ ALE ++ L+ P ++A++ QSA+ G Sbjct: 323 FPSAF-----DVDVH--WNPKDFTSVIQALETQGNVQVLSSPRVSAMNNQSAAIKVGFDE 375 Query: 294 LYKT-------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--- 337 + T V+ ++T G+ L TP + + G++ L + VS Sbjct: 376 FFVTNVSQNQNIVTSSLVTQPILNVNLTPFFSGITLDVTPQIDANGQVTLHVHPTVSLVK 435 Query: 338 --EPVI--GVNAG--DMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 VI G G ++P + +R++DT V +G +V+ GL++D + +P Sbjct: 436 DQRKVIDLGTQGGILNLPLANSTIRESDTIVHAKTGQVVVIGGLMQDTTSEGIGQVPWFG 495 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP LG L R ++ +++E+ I P LV Sbjct: 496 NIPFLGTLVRATKQTSQKSELVILLRPTLVN 526 >gi|167626227|ref|YP_001676727.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596228|gb|ABZ86226.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 582 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 116/258 (44%), Gaps = 33/258 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKS 229 + V+N +++ DQV ++ I EV R ++GF ++++ G++S Sbjct: 334 RNVINEIDVPN-DQVLIEARIVEVTRTSGLELGFNYTVSHPSGVDVGLKTFGTASESDTV 392 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 A+ + GG S E + ALE + +A P L + ++A F Sbjct: 393 VASTAKLAYTLAGG----------LSLEMEIRALENESLANQVASPHLVVANNETA-FIK 441 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--- 346 GQ + ++++GA SV + + L TP + G I + + V++ +G ++G Sbjct: 442 DGQDVPYQQATASGAASVAFQEAVLELQVTPQIAPDGNIVMEVL--VTKNSVGASSGKTS 499 Query: 347 ---DMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 D+P R+ T V + G T+V+ G+ + + IP L IP LG LF N+ Sbjct: 500 TGEDLPPIIDKREVTTKVMVKDGETVVIGGIYSKKQIETRNKIPFLGDIPYLGYLFSNTV 559 Query: 403 FNREETEIFIAATPFLVK 420 ++E+ I TP +++ Sbjct: 560 IGDTDSELLIFITPKIIE 577 >gi|297538911|ref|YP_003674680.1| type II and III secretion system protein [Methylotenera sp. 301] gi|297258258|gb|ADI30103.1| type II and III secretion system protein [Methylotenera sp. 301] Length = 638 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 18/235 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 +V L++ + EV+R L+ +G + ITG S S VS G V G+ Sbjct: 328 EVMLELQVMEVKRSYLQNLGV-NPITGISVPVPSSGILTVKDLRVS-GNSLVVNGI-PGL 384 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSVTTH--D 311 F+ + + LA P + + +A G + ++ +STG TS T D Sbjct: 385 VFDAT------SGDVNLLANPKIRVKNKDTARIHIGEKVPVFTANVASTGVTSQTVQYID 438 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV----SEPVIGVNAGDMPSYRV--RKADTTVELPSG 365 G+ L PT+ + + ++I V + V A ++RV R A T + L G Sbjct: 439 AGLKLEVEPTISAADDVTIKINLNVGSIGDKVVASSGASQSIAFRVGTRLATTQLRLHDG 498 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T +LAGL+ D ++ GIP LSKIP+LG LF N ++ +TEI ++ TP +++ Sbjct: 499 ETQILAGLIDDQDRKNVSGIPGLSKIPLLGKLFSNQTDDKVKTEIVLSITPHIIR 553 >gi|327482460|gb|AEA85770.1| general secretion pathway protein D [Pseudomonas stutzeri DSM 4166] Length = 740 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 10/164 (6%) Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVT-THDY---GVVLH 317 R IR+ P L SGQ A G + T S+ TG +T T Y GV+L Sbjct: 536 RQAVIRS--SPKLMVRSGQEARIEVGNEIPVVTGTTQSTETGNAPITQTVQYRKTGVLLS 593 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKD 376 PTV + G + L++ E+SE ++ P RK +TT+ L GG+++LAGL+ Sbjct: 594 IKPTVQASGVVDLQVSQELSESTDTSTGENLTPVINNRKVETTLTLRDGGSVMLAGLISS 653 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + G+PLL +P +G LF++ + TE+ + P++++ Sbjct: 654 NKGRGDTGVPLLGDLPWVGNLFKSQSASENRTELIVMIIPYIIR 697 >gi|93006778|ref|YP_581215.1| type II and III secretion system protein [Psychrobacter cryohalolentis K5] gi|92394456|gb|ABE75731.1| type II and III secretion system protein [Psychrobacter cryohalolentis K5] Length = 750 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 15/180 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT------ 309 + +L AL+ +T+ L+ P++ + + AS G + T S +TG+ S T Sbjct: 490 YGAILQALDSSTSANLLSMPSILTLDNEKASILVGQNVPFVTGSYTTGSDSSTNPFQTID 549 Query: 310 -HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGG 366 D G+ L+ P + + G + L + EVS V G +AG+ K+ +TT+ Sbjct: 550 RQDIGINLNVIPHIGANGTVRLEVSQEVSSVVPG-SAGNASGLITNKSLINTTILADDQQ 608 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 TI L GL++D+ ++ +P L +P++G LFR+ N +++ + I ++P +RD Sbjct: 609 TIALGGLMRDNSTTRQQKVPGLGNVPLIGRLFRSDNDNSQKSNLII-----FLQPTILRD 663 >gi|123443548|ref|YP_001007521.1| general secretion pathway protein D [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090509|emb|CAL13378.1| general secretion pathway protein D [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 648 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 17/200 (8%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 +++ + AL + LA P++ + A F G Q + S+ T AT S++ Sbjct: 416 NWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 474 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366 GV+L P + + L I+ EVS VNA ++ S + R + V + SG Sbjct: 475 QSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSVFNKRVVNNAVLVKSGE 534 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T+V+ GLL I ++ +PLL IP +G LFR S+ E++ + + ++P +R+ Sbjct: 535 TVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQSKEKIEKSNLIL-----FIRPTILRE 589 Query: 427 LSRPDDHYSVEDDAKAFFFN 446 S D+ V D A + N Sbjct: 590 TS---DYSQVTVDKYAEYNN 606 >gi|296135153|ref|YP_003642395.1| type IV pilus secretin PilQ [Thiomonas intermedia K12] gi|295795275|gb|ADG30065.1| type IV pilus secretin PilQ [Thiomonas intermedia K12] Length = 752 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 7/162 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E + ++ P + A+ G + Y+ +SS GAT+VT + L T Sbjct: 589 LSAMEADGKGKIISSPRVITADLSKATIEQGTEIPYQQATSS-GATAVTFKKAVLSLDVT 647 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + + ++ P G + +PS T V++ +GGT+VL G+ Q Sbjct: 648 PQITPDGNVIMNVEIHKDSP--GASTAGVPSINTNTVTTQVQVENGGTVVLGGIYTSQEQ 705 Query: 380 QLKEGIPLLSKIPILGALFRNSR--FNREETEIFIAATPFLV 419 + +PLL IP+LG LF+N+ +N+ E +F+ TP +V Sbjct: 706 NQTDKVPLLGDIPVLGNLFKNNSKMYNKNELMVFL--TPKIV 745 >gi|300023665|ref|YP_003756276.1| general secretion pathway protein D [Hyphomicrobium denitrificans ATCC 51888] gi|299525486|gb|ADJ23955.1| general secretion pathway protein D [Hyphomicrobium denitrificans ATCC 51888] Length = 773 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 97/197 (49%), Gaps = 21/197 (10%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDY---- 312 +L AL + TA+R ++ P++ + Q A G Q + + S S T ++ Sbjct: 554 ILDALAKETAVRIVSSPSVVVLHNQQAILEVGDQVPIITREAQSVINPDSPTVNEIEFKN 613 Query: 313 -GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGG 366 GV+L+ TP + S G + + +Q EVS D P+ R+ +T+ + SG Sbjct: 614 TGVILNVTPRINSNGLVTMEVQQEVSAVQNTSGQSDAATSLTPTISQRRVTSTIAVQSGQ 673 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIFIAATPFLVKPVAMR 425 +VL GL+++++ + K IP+++KIP LG + N R TE+ + ++P+ +R Sbjct: 674 MVVLGGLIREEVSRSKSSIPVINKIPYLGDVLGGETDNGRTRTELVV-----FIRPIVIR 728 Query: 426 DLSRPDDHYSVEDDAKA 442 + P+D + + +A Sbjct: 729 N---PEDASNAAEALRA 742 >gi|30249573|ref|NP_841643.1| general (type II) secretion pathway (GSP) D protein [Nitrosomonas europaea ATCC 19718] gi|30138936|emb|CAD85515.1| General (type II) secretion pathway (GSP) D protein [Nitrosomonas europaea ATCC 19718] Length = 763 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 9/160 (5%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRI 328 LA P + S + A G + TV+++ A S T D G+ P V + + Sbjct: 415 LANPRIRVKSREKAKIHIGNKEPVFTVTNTANVGSAASATYIDVGLKFEVEPVVRTNNEV 474 Query: 329 GLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 L+ EVS + G NA R A+T +EL G T VLAGL++DD+ +++ Sbjct: 475 TLKALLEVSSNLGEKRSGSGENAATAIVIGTRTAETVLELRDGETQVLAGLIQDDLSRVR 534 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 GI L+ IP+LG +F +TEI + TP +V+ V Sbjct: 535 SGIAGLTDIPVLGDIFSKQVRKHNKTEIILLITPHIVRNV 574 >gi|319789878|ref|YP_004151511.1| type II and III secretion system protein [Thermovibrio ammonificans HB-1] gi|317114380|gb|ADU96870.1| type II and III secretion system protein [Thermovibrio ammonificans HB-1] Length = 663 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 13/182 (7%) Query: 249 GVLDR---FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 G+L++ E L ALE + ++ P + + Q AS G + Y+ S+ GA Sbjct: 474 GILNKAQTLRVELALKALEVDGDAQIISSPKVLTLDNQEASIEQGIEIPYR--ESTVGAG 531 Query: 306 SVTTHDYG-----VVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKAD 357 T++ ++L P + I L I+ P + + G+ P+ R Sbjct: 532 GATSYRIAFKKASLILKVKPHITKDNNILLDIEVRKDSPNYDYVAITGGNEPAINTRNVK 591 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + V + +G T+V+ G+ + + + + G+P+LS+IP+LG LF+N ++++ I TP Sbjct: 592 SRVMIRNGDTVVIGGIYEKERSKSQSGVPVLSRIPLLGWLFKNQTVQVTKSKLLIFITPV 651 Query: 418 LV 419 L+ Sbjct: 652 LI 653 >gi|88866562|gb|ABD57336.1| TapQ [Aeromonas salmonicida subsp. salmonicida A449] Length = 730 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ + +A P +T + Q + G + SSS+GA Sbjct: 551 FQVARLADGTLLDLELSALEKESKAEIIASPRVTT-ANQKPALIEQGTEIPYVESSSSGA 609 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSVT + L TP + R+ L + + + GD S + T V + Sbjct: 610 TSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDAVSINAQSITTQVLV 669 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G T+VL G+ + I+ +PLL IP LG LFR + ++ E+ I TP +V Sbjct: 670 NNGETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSENKKRELLIFVTPKIV 726 >gi|242277876|ref|YP_002990005.1| type II and III secretion system protein [Desulfovibrio salexigens DSM 2638] gi|242120770|gb|ACS78466.1| type II and III secretion system protein [Desulfovibrio salexigens DSM 2638] Length = 534 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 112/237 (47%), Gaps = 13/237 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV++K + EV ++GF+ + ++ G A DFG F G + + L +F Sbjct: 269 QVSIKAYLVEVTLTDETKLGFEWMFSTNADGTDLKGALDFGHIFDPTGIANTAQEAL-KF 327 Query: 255 S------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATS 306 S F+ +++ + R ++ P + A+ Q AS G + L T +S T + Sbjct: 328 SIINSDNFKMMMNFFASDDSSRVVSAPHIVALDNQKASIAVGTEIPILKLTQTSVTSQQN 387 Query: 307 VT-THD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 V T+D +G+ L+ TPT+ + L+I +S + D R A TTV + Sbjct: 388 VIKTYDHRKFGMQLNITPTIAENRDVTLKIDQTLSSLLADDTDPDKWQSTDRAASTTVLV 447 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T+V+ GL+ + K+G P L +P+LG LF + + ++E+ + TP+++ Sbjct: 448 KDAQTLVIGGLMTVNSALDKKGAPYLRNMPVLGPLFGSQDDSMTKSELLLFLTPYVI 504 >gi|224826467|ref|ZP_03699569.1| type II and III secretion system protein [Lutiella nitroferrum 2002] gi|224601568|gb|EEG07749.1| type II and III secretion system protein [Lutiella nitroferrum 2002] Length = 659 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 10/182 (5%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVV 315 VLH + T LA P + + + A G + V ++ A SV+ D GV Sbjct: 407 VLHLQAQDTDANVLANPRIRVKNHEKAKIHIGDKVPVFTSTAVVNAGIAQSVSYLDVGVK 466 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGL 373 L P++ + + + EVS V V+ G +Y++ R ADTT+ L G T VLAGL Sbjct: 467 LEVKPSIGLDDDVTIDVGLEVSSIVKQVDFGTSTAYQIGSRAADTTLRLRDGETQVLAGL 526 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 ++D+ ++ IP L +PI+G LF ++ +R ++EI + TP +V +L PD Sbjct: 527 IQDEDRRSITKIPGLGDLPIVGRLFSSNNDSRSKSEIVLLITPHIV-----HNLDLPDRQ 581 Query: 434 YS 435 S Sbjct: 582 IS 583 >gi|87120710|ref|ZP_01076603.1| general secretion pathway protein D [Marinomonas sp. MED121] gi|86163938|gb|EAQ65210.1| general secretion pathway protein D [Marinomonas sp. MED121] Length = 616 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 21/249 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFVSE-----GGDFS 246 QV ++ I E+ +++G Q I GS SG + + A S + Sbjct: 336 QVLIEAVIVEITVTDEEELGVQWLIGGSDEIISGTNFTSAGSSANTIASSINSSTANTLA 395 Query: 247 VKG--VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSST 302 G +L +F ++ AL+ T L+ P + + Q A G ++T S + Sbjct: 396 TGGTAILGDTNFGAIIQALQSKTNSNLLSTPKILTLDNQEARILVGETRPFQTGEYSEDS 455 Query: 303 GATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYR-VRKAD 357 +T VTT D G+ L TP + S G ++ EV + V + A D+ + VR+ + Sbjct: 456 DSTFVTTSREDVGLTLKVTPHINS----GNEVKMEVFQTVESASDEASDLGTITTVREVE 511 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V TIVL GL++D+I + K+ +P L +P +G LFR+S F+ ++ + + P Sbjct: 512 TVVIAGDRQTIVLGGLIQDNITESKQKVPFLGDLPFVGGLFRSSSFSIDKKNLLVFIRPT 571 Query: 418 LVKPVAMRD 426 +++ A D Sbjct: 572 IIRGKAKAD 580 >gi|115524675|ref|YP_781586.1| general secretion pathway protein D [Rhodopseudomonas palustris BisA53] gi|115518622|gb|ABJ06606.1| general secretion pathway protein D [Rhodopseudomonas palustris BisA53] Length = 789 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 18/235 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-----VSEGGDFSVKG 249 QV ++VTIAE+ Q G Q + S +F+A GG S G V G Sbjct: 531 QVNIEVTIAEITLTSELQYGVQFFLK------SGNFSAGLGGASGIPLRTSYPGLNLVSG 584 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSSTGA 304 L + VL AL + T+++ L+ P+L + Q A G Q + S+ Sbjct: 585 AL--LDPQVVLDALAQFTSVKVLSSPSLVVLDRQPAVLQVGDQIPILTRQLTSAESTATV 642 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 ++V D G++L+ P V + G + L ++ ++S V P+ R+ + + + S Sbjct: 643 SNVDLKDTGIILNVLPRVNANGLVTLNVEQQISNVVSTQPDTLTPTISQRRVKSVISVSS 702 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T++LAGL+ D + G+P++S+I +L L + TE+ I P ++ Sbjct: 703 GQTVLLAGLITDGQNINRNGLPVVSQIKVLSDLLSSHDRTASRTELIIFIRPKII 757 >gi|92116356|ref|YP_576085.1| type II and III secretion system protein [Nitrobacter hamburgensis X14] gi|91799250|gb|ABE61625.1| type II and III secretion system protein [Nitrobacter hamburgensis X14] Length = 773 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/283 (25%), Positives = 119/283 (42%), Gaps = 54/283 (19%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------PSKSFAADFGG 236 QV + TIAEV G Q +T + G P+ + D G Sbjct: 484 QVAIDATIAEVTLTNELSYGVQSYLTSKNLGMKANQGSLLNTQSNAAPIPTSAGTTDLAG 543 Query: 237 KFVSEGGDFSVKGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFT 288 S F + L F+F +L AL T+++ L+ P+L I+ Q+A+ Sbjct: 544 AAGSVANAF-INRALPGFNFLIGSEAQPAVILDALHAVTSVKVLSNPSLVVINNQTATLQ 602 Query: 289 SGGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 G TV STG S+ + G++L +P + G + L ++ E+S Sbjct: 603 VG-----DTVPVSTGTATVLNGNNNVVNSIDYRNTGIILRVSPRINVNGNVRLEVEQEIS 657 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 ++ P+ R+ +++ + SG T++LAGL+ + + GIPLL +I LG Sbjct: 658 SVQPTASSTLTPTVAERRVKSSISVASGQTVLLAGLISEQQNGGRSGIPLLDEIRGLGDA 717 Query: 398 F--RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 F + R R E IFI +P +RD + D H+ E+ Sbjct: 718 FAHQGKRGTRTELIIFI-------RPQIIRDGT--DAHHVAEE 751 >gi|294339205|emb|CAZ87559.1| Putative Type IV pilus biogenesis secretin PilQ [Thiomonas sp. 3As] Length = 746 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 7/162 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E + ++ P + A+ G + Y+ +SS GAT+VT + L T Sbjct: 583 LSAMEADGKGKIISSPRVITADLSKATIEQGTEIPYQQATSS-GATAVTFKKAVLSLDVT 641 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + + ++ P G + +PS T V++ +GGT+VL G+ Q Sbjct: 642 PQITPDGNVIMNVEIHKDSP--GASTAGVPSINTNTVATQVQVENGGTVVLGGIYTSQEQ 699 Query: 380 QLKEGIPLLSKIPILGALFRNSR--FNREETEIFIAATPFLV 419 + +PLL IP+LG LF+N+ +N+ E +F+ TP +V Sbjct: 700 NQTDKVPLLGDIPVLGNLFKNNSKMYNKNELMVFL--TPKIV 739 >gi|330872058|gb|EGH06207.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. glycinea str. race 4] Length = 681 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 32/256 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238 QV ++ I E D KQ+G + + ++SG K ++ D G F Sbjct: 428 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPF 487 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 488 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 547 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 548 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 601 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 602 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 661 Query: 409 EIFIAATPFLVKPVAM 424 E+ + TP ++ A+ Sbjct: 662 ELLVFLTPRIMNNQAI 677 >gi|119943949|ref|YP_941629.1| type IV pilus secretin PilQ [Psychromonas ingrahamii 37] gi|119862553|gb|ABM02030.1| type IV pilus secretin PilQ [Psychromonas ingrahamii 37] Length = 689 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/253 (27%), Positives = 116/253 (45%), Gaps = 18/253 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----AADFGG 236 KK++ +L+I QV ++ + V + +++G + +T +SS S A D G Sbjct: 446 KKMIQILDIPVR-QVVIEARMVTVDDSVSEELGVKWGMTSTSSSTVDSLNVNLPATDAAG 504 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + FS +LD L ALE +A P +T + Q+A G + Y Sbjct: 505 TIAFKLAKFSNGDILD-----LELSALESENKAEIIASPRITTANQQTAYIEQGTEIPY- 558 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYR 352 S+S+GATSV + L TP + ++ L + E+++ +G G+ + Sbjct: 559 VESASSGATSVAFKKAVLSLTVTPQITPDNKVILDL--EITQDTVGETVSAGTGEAVAID 616 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +K T V + +G T+VL G+ + +PLL IP LGALFR++ ++E+ I Sbjct: 617 TQKIGTQVLVGNGETLVLGGIYQQRNSIAVSKVPLLGDIPYLGALFRSTNEENTKSELLI 676 Query: 413 AATPFLVKPVAMR 425 TP +V R Sbjct: 677 FVTPRIVMQTKFR 689 >gi|298527731|ref|ZP_07015135.1| general secretion pathway protein D [Desulfonatronospira thiodismutans ASO3-1] gi|298511383|gb|EFI35285.1| general secretion pathway protein D [Desulfonatronospira thiodismutans ASO3-1] Length = 703 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 117/254 (46%), Gaps = 28/254 (11%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSIT-GSSSGPSKSF--AADFGGKF 238 VM L++ + QV ++V IAEVR ++G +Q+ ++ G F AAD Sbjct: 435 VMEKLDLYPK-QVLIEVIIAEVRLSDATKMGVDWQYILSFGDRLSGELRFDPAAD---AL 490 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF---------TS 289 GG F V+ + L+A ++ L+ PTL A + A+ TS Sbjct: 491 PGAGGVFRVES---SRRLKAALYAAVDDAKLQILSTPTLLASDNRPATINIGDQVPFPTS 547 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNA 345 Q L T +S T++ D G++L TP + G + + I EVS V G+ A Sbjct: 548 TRQRLDDTDTSEVIDTTIQYRDTGIILRVTPKINRHGMVRMEIVQEVSSLTARRVEGITA 607 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P R A+TT+ + TIV+AGL++ + + G+P +IP++ LF S Sbjct: 608 ---PVINTRHAETTLAVDDQETIVIAGLMEQERSRGYSGVPGFRRIPVVKHLFGTSETRF 664 Query: 406 EETEIFIAATPFLV 419 E TE+ + TP ++ Sbjct: 665 ENTELLVFITPHVI 678 >gi|77456637|ref|YP_346142.1| type II and III secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77380640|gb|ABA72153.1| pilus secretin [Pseudomonas fluorescens Pf0-1] Length = 692 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 20/249 (8%) Query: 195 QVTLKVTIAEVRRDILKQIG------FQHSITGSSSGPSKSFAADFG--------GKFVS 240 QV ++ I E D K +G Q+ ++SG S + G FV Sbjct: 441 QVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGVSNGSSTTIGTPGSTSTNSPFVD 500 Query: 241 EGGDFSVKGV-----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G + G+ D + L A+E+ +++P + ++A G + Y Sbjct: 501 MGTVNNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPY 560 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + SSS GATSV+ + + L TP + RI + ++ EP D+P + + Sbjct: 561 QEASSS-GATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNE 619 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 + V + G TIV+ G+ + ++ + +P L +P LG LFR + +++E+ + T Sbjct: 620 VNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLT 679 Query: 416 PFLVKPVAM 424 P ++ A+ Sbjct: 680 PRIMNNQAI 688 >gi|242316560|ref|ZP_04815576.1| general secretion pathway protein D [Burkholderia pseudomallei 1106b] gi|242139799|gb|EES26201.1| general secretion pathway protein D [Burkholderia pseudomallei 1106b] Length = 235 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 25/179 (13%) Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GQ+ +G Y ++S T A + T+D G+ LH P + G + L++ TE S Sbjct: 3 GQNVPIPTGS---YSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSA 59 Query: 339 PVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 V G N P++ R +TV +G IVL GL++D+ Q +PLL IP + Sbjct: 60 VVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWI 119 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 G LFR+ R++T + + ++PV + D + A+A NR + I G Sbjct: 120 GQLFRSEGKTRQKTNLMV-----FLRPVIIND----------RETAQAVTSNRYDYIQG 163 >gi|145300802|ref|YP_001143643.1| MSHA biogenesis protein MshL [Aeromonas salmonicida subsp. salmonicida A449] gi|88866576|gb|ABD57345.1| MshL [Aeromonas salmonicida subsp. salmonicida A449] gi|142853574|gb|ABO91895.1| MSHA biogenesis protein MshL [Aeromonas salmonicida subsp. salmonicida A449] Length = 556 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 26/238 (10%) Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 ITG SS F + GG K + +F ++ L+ + TL+ P +T Sbjct: 311 ITGGSSLSPTQLPTTPNQIFTALGGGAGFK--ISDGNFNVAVNLLKTQGDVNTLSSPRVT 368 Query: 279 AISGQSASFTSGGQHLYKT------------VSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 A + Q A G + T VS T +T G+ L TP + G Sbjct: 369 ATNNQKAVIKVGTDEYFVTKASTTITSNSSGVSDRTPNVELTPFFSGISLDVTPQIDEEG 428 Query: 327 RIGLRIQ-----TEVSEPVI--GVNAG--DMPSYR--VRKADTTVELPSGGTIVLAGLLK 375 ++ L I TE VI G + G ++P + +R++DT V+ +G IV+ GL+K Sbjct: 429 KVLLHIHPSVIDTEEQNKVIDMGTSGGRLELPLAKSSIRESDTVVQANNGDIIVIGGLMK 488 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDD 432 D Q++ +PLL IP +G F N R + ++ E+ I P +V K +L R D Sbjct: 489 TDKQEIVSKVPLLGDIPWIGEAFTNRRESTKKVELVILLKPTVVEKDTWQNELKRSAD 546 >gi|70730124|ref|YP_259863.1| general secretion pathway protein D [Pseudomonas fluorescens Pf-5] gi|68344423|gb|AAY92029.1| general secretion pathway protein D [Pseudomonas fluorescens Pf-5] Length = 794 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 12/188 (6%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G + G+ + + AL+ L+ P L + ++AS G + T S T Sbjct: 538 GTVDIPGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVT 597 Query: 303 GA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352 G +V + G+ L+ P + G + L I EVS + V+AG + + R Sbjct: 598 GGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSSVDQRASVDAGTVTNKR 657 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 DT++ L G +VL GLL+D Q + +P LS IP LG LFRN + + +T + + Sbjct: 658 A--IDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMV 715 Query: 413 AATPFLVK 420 P++++ Sbjct: 716 FLRPYIIR 723 >gi|320330838|gb|EFW86812.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. glycinea str. race 4] Length = 701 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 32/248 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238 QV ++ I E D KQ+G + + ++SG K ++ D G F Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPF 507 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 508 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681 Query: 409 EIFIAATP 416 E+ + TP Sbjct: 682 ELLVFLTP 689 >gi|71733370|ref|YP_272697.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553923|gb|AAZ33134.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. phaseolicola 1448A] Length = 701 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 32/248 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238 QV ++ I E D KQ+G + + ++SG K ++ D G F Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPF 507 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 508 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681 Query: 409 EIFIAATP 416 E+ + TP Sbjct: 682 ELLVFLTP 689 >gi|320322061|gb|EFW78157.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. glycinea str. B076] Length = 701 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 32/248 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238 QV ++ I E D KQ+G + + ++SG K ++ D G F Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPF 507 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 508 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681 Query: 409 EIFIAATP 416 E+ + TP Sbjct: 682 ELLVFLTP 689 >gi|120553686|ref|YP_958037.1| pilus (MSHA type) biogenesis protein MshL [Marinobacter aquaeolei VT8] gi|120323535|gb|ABM17850.1| pilus (MSHA type) biogenesis protein MshL [Marinobacter aquaeolei VT8] Length = 572 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 113/257 (43%), Gaps = 28/257 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-FGGKFVSE---GGDFSVKGV 250 QV L+ I EV + Q G + SS+G + F + GG+ + GG FS Sbjct: 286 QVVLEAKILEVGLNEGYQQGIDWNDVQSSAGRADYFTSQSLGGQQIRTPDIGGLFS--AT 343 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----------VS 299 + F ++ L + ++ L+ P ++ ++ Q A G + T + Sbjct: 344 VSAGDFTGLIELLGQQGNVQILSSPRISTVNNQKAVIKVGTDEFFVTDIDFDDNNSAVTA 403 Query: 300 SSTGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGD--MPS 350 + + +TSV + G+ L TP + G I L + VSE VI + D +P Sbjct: 404 TDSTSTSVELTPFFSGISLDVTPQIAEDGAITLHVHPSVSEVADQEKVITIGERDVTLPL 463 Query: 351 YR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R VR+ D+ + SG +V+ GL+++ + +P S+IP+LG LF+ F ++ Sbjct: 464 ARSTVRETDSVIRAESGQIVVIGGLIQNSSEDNNSAVPFFSEIPLLGELFKQRNFESRKS 523 Query: 409 EIFIAATPFLVKPVAMR 425 E+ I P + M+ Sbjct: 524 ELVILLRPVVANAGQMQ 540 >gi|311695246|gb|ADP98119.1| type II and III secretion system protein [marine bacterium HP15] Length = 663 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 115/255 (45%), Gaps = 40/255 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFG--GKFVSE---------- 241 QV ++ I E+ ++ + +G Q ++ G SG S A +FG G+ + E Sbjct: 362 QVMIEAAIVEISDELGQDLGVQVAV-GDESGESTPVAGTNFGNVGRSLGEVLSAILTGSA 420 Query: 242 -----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G + GV S+ +L AL + A L+ P++ + Q + G Sbjct: 421 ITPATGGITIGAGQRNENGV----SWGVLLQALSTSAAANLLSTPSIITLDNQESEIIVG 476 Query: 291 GQHLYKTVSSS-TGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 ++T S+ TG T++ D G+ L TPT+ + G + L ++ + +E V Sbjct: 477 QNVPFRTGQSTVTGDGTTNPFTTIERRDIGLTLKVTPTISADGLVRLVVE-QTTESVADS 535 Query: 344 --NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 NA D+ + + R+ TTV G TIVL GL +DD Q K +PLL IP +G LF + Sbjct: 536 IENASDIVTNK-REIKTTVLADDGETIVLGGLTRDDYQVNKSKVPLLGDIPFVGRLFSSE 594 Query: 402 RFNREETEIFIAATP 416 R + + + P Sbjct: 595 SERRVKRNLLVFLRP 609 >gi|322421237|ref|YP_004200460.1| general secretion pathway protein D [Geobacter sp. M18] gi|320127624|gb|ADW15184.1| general secretion pathway protein D [Geobacter sp. M18] Length = 638 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 111/254 (43%), Gaps = 27/254 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAA--DFG-----GKFVSEGGDFS 246 QV ++ IAEV + K +G Q IT +S+G + FG V+ Sbjct: 356 QVYVQAMIAEVSVNKAKDLGVQLGVITAASNGTVSAIGTFDPFGTVAGLSTTVTAAKALG 415 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTA--------ISGQSASFTSGGQHLYKTV 298 ++ L + + VL AL+ A+ L+ P + G+S F SG T Sbjct: 416 MEVTLGKVNIPVVLQALQTNGALNVLSTPNIMTSDNKEAEIFVGESVPFVSG------TN 469 Query: 299 SSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRK 355 +STG + S+ D G++L P + + L I E+S G R Sbjct: 470 LTSTGLSQQSIERKDTGIILKIKPQISEGEYVKLDIYQEISAVKEFGTATESNLGSTKRS 529 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A T+V + + T+++ GL++D Q + IPLL IP LG LF+ R++ + I T Sbjct: 530 AKTSVVVKNSDTVLIGGLIQDTDQVTESKIPLLGDIPGLGWLFKTRSTKRDKVNLLIMLT 589 Query: 416 PFLVKPVAMRDLSR 429 P ++K RD++ Sbjct: 590 PRIIKDA--RDMAE 601 >gi|257483507|ref|ZP_05637548.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330984730|gb|EGH82833.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009590|gb|EGH89646.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 701 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 32/248 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238 QV ++ I E D KQ+G + + ++SG K ++ D G F Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPF 507 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 508 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681 Query: 409 EIFIAATP 416 E+ + TP Sbjct: 682 ELLVFLTP 689 >gi|154249944|ref|YP_001410769.1| type II and III secretion system protein [Fervidobacterium nodosum Rt17-B1] gi|154153880|gb|ABS61112.1| type II and III secretion system protein [Fervidobacterium nodosum Rt17-B1] Length = 1519 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 2/152 (1%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGR 327 + LA P + SG+ A G K VS+S G T+ V + + G+ L P V + Sbjct: 1363 KLLANPNIMTKSGEEARIFIGDSIPLKIVSTSGGQTNEQVISLEGGIELKIVPYVNADNT 1422 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I L I T VS V +P R A T + + G T+V+ GL +++ + + +P+ Sbjct: 1423 IDLVITTSVSNFDYSVLVNGLPKINKRDASTKITIKDGQTLVIGGLSREEKSKSEWKVPI 1482 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L IPILG LFR ++ E+ I I T +V Sbjct: 1483 LGDIPILGYLFRGTKEASEQRSITIFLTAKIV 1514 >gi|170719573|ref|YP_001747261.1| type IV pilus secretin PilQ [Pseudomonas putida W619] gi|169757576|gb|ACA70892.1| type IV pilus secretin PilQ [Pseudomonas putida W619] Length = 422 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 11/227 (4%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGGKFVSEGGDFSV--KGV 250 QV ++ I E D +G + S P+ K D G + F V GV Sbjct: 190 QVEIEARIVEANVDYENSLGVRWGPRLYSEAPALGKDVFVDLGMERAGSSIGFGVLRGGV 249 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L + L A+E+ +++P + + ++A G + Y+ + S GATSVT Sbjct: 250 L----LDLELSAMEKTGNGEIISQPKVVTANNETARILKGTEVPYQETTKS-GATSVTFR 304 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIV 369 + + L TP + G++ + ++ EP VNA D+P R + + V + G TIV Sbjct: 305 EASLSLEVTPQITPDGKVIMTVKVTKDEPDF-VNALNDVPPIRKNEVNAKVRVADGETIV 363 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + G+ + + +P +P +G LFR +++E+ + TP Sbjct: 364 IGGVYSTTQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 410 >gi|254244921|ref|ZP_04938243.1| hypothetical protein PA2G_05797 [Pseudomonas aeruginosa 2192] gi|126198299|gb|EAZ62362.1| hypothetical protein PA2G_05797 [Pseudomonas aeruginosa 2192] Length = 803 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 12/191 (6%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295 G + G+ + + AL+ L+ P L + +SAS G GQ++ Sbjct: 547 GTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVT 606 Query: 296 KTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352 +S ++ D G+ L+ P + G + L + EVS + AG + + R Sbjct: 607 DGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKR 666 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 DT++ L G +VL GLL+D++Q +G+P LS +P +G+LFR + +R +T + + Sbjct: 667 A--IDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMV 724 Query: 413 AATPFLVKPVA 423 P++V+ A Sbjct: 725 FLRPYIVRDAA 735 >gi|254429767|ref|ZP_05043474.1| general secretion pathway protein D [Alcanivorax sp. DG881] gi|196195936|gb|EDX90895.1| general secretion pathway protein D [Alcanivorax sp. DG881] Length = 694 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 35/255 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------ 242 Q+ ++ I E+ + K +GFQ+ + SG A +FGG +S Sbjct: 349 QILIEAAIVEISGEQGKNLGFQYVGGSNESGVG---AVNFGGGGLSINSIVQALATDDPS 405 Query: 243 ----GDFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 GD G+ + S + ++ AL ++ + L+ P++ + + AS G Sbjct: 406 GLSLGDGITAGLGETDSNGDLKWGALVQALSTSSDVNLLSTPSILTLDNEEASIVVGENV 465 Query: 294 LYKT-VSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + T S++TG+ T++ D G+ L TP V G +R++ E + +AG Sbjct: 466 PFVTGQSTNTGSGVSNPFTTIQREDVGLTLKVTPHV--AGLSTIRLELEQENSAVKDSAG 523 Query: 347 DMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 D RK +TV TI L GL+KDDI+ +PLL IP LG LFR++ + Sbjct: 524 DAVDIVTTTRKLQSTVLADDAETIALGGLIKDDIRVTVRKVPLLGDIPFLGFLFRSTSKD 583 Query: 405 REETEIFIAATPFLV 419 R ++ + + P ++ Sbjct: 584 RVKSNLMVFLKPTIL 598 >gi|330877965|gb|EGH12114.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 701 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 32/248 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGK--------------F 238 QV ++ I E D KQ+G + S S SG ++ D G F Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAGNTSGNLTSNVPF 507 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 508 VDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681 Query: 409 EIFIAATP 416 E+ + TP Sbjct: 682 ELLVFLTP 689 >gi|116048592|ref|YP_792609.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115583813|gb|ABJ09828.1| probable type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 803 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 12/191 (6%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295 G + G+ + + AL+ L+ P L + +SAS G GQ++ Sbjct: 547 GTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVT 606 Query: 296 KTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352 +S ++ D G+ L+ P + G + L + EVS + AG + + R Sbjct: 607 DGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKR 666 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 DT++ L G +VL GLL+D++Q +G+P LS +P +G+LFR + +R +T + + Sbjct: 667 A--IDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMV 724 Query: 413 AATPFLVKPVA 423 P++V+ A Sbjct: 725 FLRPYIVRDAA 735 >gi|146307949|ref|YP_001188414.1| general secretion pathway protein D [Pseudomonas mendocina ymp] gi|145576150|gb|ABP85682.1| general secretion pathway protein D [Pseudomonas mendocina ymp] Length = 645 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 15/151 (9%) Query: 282 GQSASFTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 GQ+ F +G Y T +S G T++ D GV L TP++ + L I+ E+S Sbjct: 455 GQNVPFQTGS---YTTDASGAGNPFTTIERKDIGVTLKVTPSINEGATLRLEIEQEISSI 511 Query: 339 -PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 P G+NA D+ + + R +T+ G IVL GL++DD+ Q +PLL IP++G Sbjct: 512 APSTGLNAQAVDLVTNK-RSIKSTILADDGQVIVLGGLIQDDVTQSISKVPLLGDIPLIG 570 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LFR++R + + + + ++P +RD Sbjct: 571 GLFRSTRDSHVKRNLMV-----FLRPTVVRD 596 >gi|170729053|ref|YP_001763079.1| general secretion pathway protein D [Shewanella woodyi ATCC 51908] gi|169814400|gb|ACA88984.1| general secretion pathway protein D [Shewanella woodyi ATCC 51908] Length = 714 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 17/179 (9%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGAT----SVTT 309 F ++ A+ T LA P++T + Q ASF G + L +SS G + +V Sbjct: 449 FGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGAQNSSNGNSNPFQTVER 508 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGT 367 + GV L P + + L I+ EVS G+N G ++ R+ TTV SG Sbjct: 509 KEVGVKLKVVPQINEGSSVKLTIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQI 564 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +VL GL+ +++Q+ + +P L IPI+G LF++S +++ + + +KP +RD Sbjct: 565 VVLGGLINEEVQESVQKVPFLGDIPIIGHLFKSSSSGKKKKNLMV-----FIKPTIIRD 618 >gi|330807111|ref|YP_004351573.1| Type IV fimbriae biogenesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375219|gb|AEA66569.1| Type IV fimbriae biogenesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 696 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 20/249 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGF------QHSITGSSSGPSKSFAADFGGK--------FVS 240 QV ++ I E D K +G Q+ SSSG + + G FV Sbjct: 445 QVMIEARIVEANVDYDKSLGVRWGGSVQNKGNWSSSGVTTGDSTTVGTPGSTSTNQPFVD 504 Query: 241 EGGDFSVKGV-----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G + G+ D + L A+E+ +++P + ++A G + Y Sbjct: 505 LGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPY 564 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + SSS GATSV+ + + L TP + RI + ++ EP D+P + + Sbjct: 565 QEASSS-GATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVNDVPPIKKNE 623 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++E+ + T Sbjct: 624 VNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSDSKSELLVFLT 683 Query: 416 PFLVKPVAM 424 P ++ A+ Sbjct: 684 PRIMNNQAI 692 >gi|157373684|ref|YP_001472284.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sediminis HAW-EB3] gi|157316058|gb|ABV35156.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sediminis HAW-EB3] Length = 567 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 106/219 (48%), Gaps = 28/219 (12%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302 SVKG +F T+++ L+ + L+ P +TA + Q A G + T SST Sbjct: 348 LSVKG----SNFNTMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTV 403 Query: 303 -GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAG--D 347 G T VTT + G+ L TP + G I L I V + VI ++ + Sbjct: 404 AGTTPVTTPEVELTPFFSGIALDVTPQIDGEGNILLHIHPSVIDIKEQTKVIKISGSSLE 463 Query: 348 MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P + +R++DT ++ +G +V+ GL+K + +++ +PLL IP++G LF N + Sbjct: 464 LPLAQSDIRESDTVIKAKTGDVVVIGGLMKSENIEVESKVPLLGDIPLVGELFTNRSKSL 523 Query: 406 EETEIFIAATPFLVKPVAMR-DLSRP----DDHYSVEDD 439 ++TE+ I P +V R +L + D Y ED+ Sbjct: 524 KKTELVILLKPTVVGADTWRKELQKSKALLDRWYPEEDE 562 >gi|107100151|ref|ZP_01364069.1| hypothetical protein PaerPA_01001172 [Pseudomonas aeruginosa PACS2] Length = 786 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 12/191 (6%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295 G + G+ + + AL+ L+ P L + +SAS G GQ++ Sbjct: 530 GTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVT 589 Query: 296 KTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352 +S ++ D G+ L+ P + G + L + EVS + AG + + R Sbjct: 590 DGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKR 649 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 DT++ L G +VL GLL+D++Q +G+P LS +P +G+LFR + +R +T + + Sbjct: 650 A--IDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMV 707 Query: 413 AATPFLVKPVA 423 P++V+ A Sbjct: 708 FLRPYIVRDAA 718 >gi|149378291|ref|ZP_01896001.1| Type II secretory pathway, component PulD [Marinobacter algicola DG893] gi|149357425|gb|EDM45937.1| Type II secretory pathway, component PulD [Marinobacter algicola DG893] Length = 650 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 42/259 (16%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----------DFGGKFVSE-- 241 QV ++ I E+ ++ + +G Q ++ G SG S A D G +S+ Sbjct: 352 QVMIEAAIVEISDELGQDLGVQLAL-GDESGESTPVAGTNFNNVGRSLGDVLGAILSDSV 410 Query: 242 -----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G + GV S+ +L AL + A L+ P++ + Q + G Sbjct: 411 IAPATGGITIGAGQRNENGV----SWGVLLQALSTSAAANLLSTPSIITLDNQESEIIVG 466 Query: 291 GQHLYKTVSSS-TGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342 ++T S+ TG T++ D G+ L TPT+ + G + R+ E + IG Sbjct: 467 QNVPFRTGQSTVTGDGTTNPFTTIERRDIGLTLKVTPTISADGLV--RLVVEQTTENIGD 524 Query: 343 --VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +A D+ + + R+ TTV G TIVL GL DD+Q K +PLL IP+LG LF + Sbjct: 525 SVESASDIITNK-REIKTTVLADDGETIVLGGLTTDDLQVNKSKVPLLGDIPVLGRLFSS 583 Query: 401 SRFNREETEIFIAATPFLV 419 R + + + P ++ Sbjct: 584 ESERRVKRNLLVFLRPTIM 602 >gi|109899541|ref|YP_662796.1| type II and III secretion system protein [Pseudoalteromonas atlantica T6c] gi|109701822|gb|ABG41742.1| type II and III secretion system protein [Pseudoalteromonas atlantica T6c] Length = 711 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 117/253 (46%), Gaps = 21/253 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRF 254 V ++V +AEV+ + + G + + SS G ++ GG + G + ++ Sbjct: 452 VMVEVILAEVQLNDSEDTGVEW-LANSSLGRFGITSSTIGGLGLGASGFNMTLDSAGQTR 510 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------V 307 + + + E+A IR+ P L SG AS G + T +S + S + Sbjct: 511 AMLNLFYKNEKAN-IRS--RPRLMVKSGGEASIDVGNEIPVITSNSQSTTDSDAVVLQTI 567 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGG 366 + GV+L PTV + G + + I E+SE ++ D P+ RK TTV L GG Sbjct: 568 SYRKTGVLLEVKPTVHASGFVDIEITQELSEATETSSSDIDSPTILNRKISTTVTLRDGG 627 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +++L GL+ +G+P+L ++P++G LF ++ TE+ I P++ Sbjct: 628 SVLLGGLISSTTSTGTQGVPILGRLPMIGKLFSTDSNAQDRTELMIMIIPYI-------- 679 Query: 427 LSRPDDHYSVEDD 439 L+ PD+ + D+ Sbjct: 680 LNSPDEAEQLTDE 692 >gi|241767965|ref|ZP_04765503.1| type II and III secretion system protein [Acidovorax delafieldii 2AN] gi|241360839|gb|EER57693.1| type II and III secretion system protein [Acidovorax delafieldii 2AN] Length = 381 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 17/164 (10%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 I G + F +G Y ++GA T+V D G++L P + G + L I E Sbjct: 209 IIGSNVPFVTGS---YANTGGNSGAVNPFTTVERKDVGLMLKVRPQINENGTVKLAIYQE 265 Query: 336 VSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VS+ V+ + P+ R ++ V + G IV+ GLL+D Q ++ +PL+ IP+L Sbjct: 266 VSKIDEATVSNANGPTTSKRSIESNVLVEDGNIIVIGGLLEDSYSQGEDKVPLMGDIPLL 325 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD----DHY 434 G LFR+ +R++T + + ++PV +RD + D D Y Sbjct: 326 GNLFRSENRSRKKTNLMV-----FLRPVVVRDAAASDALMIDRY 364 >gi|224370094|ref|YP_002604258.1| GspD2 [Desulfobacterium autotrophicum HRM2] gi|223692811|gb|ACN16094.1| GspD2 [Desulfobacterium autotrophicum HRM2] Length = 761 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 30/242 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVL 251 QV ++VT+AEV + SS G +F D G V++G G VL Sbjct: 500 QVLIEVTLAEVTLN-----------DSSSLGVEWTFIKDGGS--VADGLIQGTLGSTNVL 546 Query: 252 -----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASF-------TSGGQHLYKTVS 299 + + L AL + L+ P++ A + A ++ Y T Sbjct: 547 QYNFGNTQKWAATLTALASKGDVNILSSPSVLASDNKEAKIDISTEVPVVTTEYKYGTDG 606 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKAD 357 AT++ + GV+L TP + G + + I EVSE V AG + PS+ R Sbjct: 607 DDMLATNIQYRNTGVILTVTPHINERGLVSMEINQEVSEQADAVLAGGQEYPSFYKRSVQ 666 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TT+ + TI + GL++ + GIPLL+++P LF + E+ E+ I TP Sbjct: 667 TTLTVNDNQTIAIGGLMRKKEEDSSAGIPLLNQLPFFKYLFGKTAGGNEKNELIILITPR 726 Query: 418 LV 419 +V Sbjct: 727 VV 728 >gi|330938634|gb|EGH42200.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 554 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 32/256 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238 QV ++ I E D KQ+G + + ++SG K ++ D G F Sbjct: 301 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAGNTSGNLTSNVPF 360 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 361 VDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 420 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 421 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 474 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 475 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 534 Query: 409 EIFIAATPFLVKPVAM 424 E+ + TP ++ A+ Sbjct: 535 ELLVFLTPRIMNNQAI 550 >gi|251787909|ref|YP_003002630.1| putative outer membrane porin HofQ [Dickeya zeae Ech1591] gi|247536530|gb|ACT05151.1| type IV pilus secretin PilQ [Dickeya zeae Ech1591] Length = 433 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + +A P L Q+AS G + Y+ S ++G+TS+ + + + T Sbjct: 262 LMALEQENEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 321 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P +L G+I L + + P + G++ + ++ T V + G TIVL G+ + Sbjct: 322 PRILHGGQITLNLLISQNMPGRAIKQGENGEILAIDKQEIQTQVTVQDGETIVLGGIFQQ 381 Query: 377 DIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAATPFLVK 420 Q + +P L +P +GA FR N + R E IFI TP L++ Sbjct: 382 QKNQAERQVPGLGALPGIGAWFRSGNRQHTRRELVIFI--TPTLIQ 425 >gi|194364334|ref|YP_002026944.1| general secretion pathway protein D [Stenotrophomonas maltophilia R551-3] gi|194347138|gb|ACF50261.1| general secretion pathway protein D [Stenotrophomonas maltophilia R551-3] Length = 733 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 128/285 (44%), Gaps = 29/285 (10%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--- 216 AVE + T L +S + S ++V+ L++ QV ++ +AEV + + G Sbjct: 425 AVEETNTLLVRSTPQAW--RSIREVIEKLDVM-PLQVHIEAQVAEVALEGDLKYGVNWFF 481 Query: 217 ------HSITGSSSGPSKSFAADFGGKFVS-EGGDFSVKGVLDRFSFET---VLHALERA 266 ++TG+ +G + AA GG + S G +G+ F+ V+ AL++ Sbjct: 482 DNAVAGRALTGALAGVTLPAAA--GGSWSSLAGAATGGEGLGWAFTGHNGAAVVSALDKV 539 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPT 321 T +R L P++ + A+ G + T + +TG +SV D GV+L P Sbjct: 540 TDVRLLQTPSVFVRNNAEATLNVGDKVPINTTTVNTGIGTSSYSSVQYIDTGVILKVRPR 599 Query: 322 VLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 V G + L I EVS E P +K T + SG TI+LAGL+ Sbjct: 600 VTRDGTVFLDIVQEVSSASNVPENCNPQERNCNPRISTKKLSTEAAVQSGDTIMLAGLIT 659 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 D GIP LS+IP++GALF +E+ + TP +V+ Sbjct: 660 DTGTDGSSGIPGLSRIPVVGALFGQKSRTSRRSEVIVLLTPSIVR 704 >gi|157959974|ref|YP_001500008.1| general secretion pathway protein D [Shewanella pealeana ATCC 700345] gi|157844974|gb|ABV85473.1| general secretion pathway protein D [Shewanella pealeana ATCC 700345] Length = 710 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 17/179 (9%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F ++ A+ T LA P++T + Q ASF G + T S ++ +V Sbjct: 443 FAALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVER 502 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGT 367 + GV L P + + L I+ EVS G+N G ++ R+ TTV SG Sbjct: 503 KEVGVKLKVVPQINEGSSVKLTIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQI 558 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +VL GL+K+++Q+ + +P L IPI+G LF++S +++T + + +KP +RD Sbjct: 559 VVLGGLIKEEVQESVQKVPFLGDIPIIGHLFKSSSSGKKKTNLMV-----FIKPTIIRD 612 >gi|331017211|gb|EGH97267.1| general secretion pathway protein D [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 361 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALE + L+ P+L ++ Q A G + +++T +SV Sbjct: 157 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTATNTTLSSVE 216 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS+ G + D+ P R T V SG Sbjct: 217 YVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRSVSTQVAAQSG 276 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF NS +++ TE+ + TP ++ Sbjct: 277 QTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLITPRVI 330 >gi|182679972|ref|YP_001834118.1| general secretion pathway protein D [Beijerinckia indica subsp. indica ATCC 9039] gi|182635855|gb|ACB96629.1| general secretion pathway protein D [Beijerinckia indica subsp. indica ATCC 9039] Length = 803 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 12/175 (6%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGAT-----SVTTHD 311 V++AL T ++ L+ P+L + Q A G Q L + +S+ A SV D Sbjct: 612 VINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANPAIVNSVNYKD 671 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G++L+ P V + G + L I+ ++S P+ R+ +T+ +P+G T++LA Sbjct: 672 TGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIAIPNGQTVLLA 731 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+++ + G+P++SKI L L N + TE+ + +KP +R+ Sbjct: 732 GLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIM-----FIKPQILRN 781 >gi|66043674|ref|YP_233515.1| type II and III secretion system protein:NolW-like:NolW-like [Pseudomonas syringae pv. syringae B728a] gi|63254381|gb|AAY35477.1| type II and III secretion system protein:NolW-like:NolW-like [Pseudomonas syringae pv. syringae B728a] Length = 718 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 32/248 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGK--------------F 238 QV ++ I E D KQ+G + S S SG ++ D G F Sbjct: 465 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAGNTSGNLTPNVPF 524 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 525 VDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 584 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 585 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 638 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 639 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 698 Query: 409 EIFIAATP 416 E+ + TP Sbjct: 699 ELLVFLTP 706 >gi|255322161|ref|ZP_05363307.1| type II and III secretion system protein [Campylobacter showae RM3277] gi|255300534|gb|EET79805.1| type II and III secretion system protein [Campylobacter showae RM3277] Length = 481 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 22/186 (11%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSV 307 F+ + VL+ LE + ++ P +T ++ Q A + G Y+ S G T++ Sbjct: 274 FNLDGVLNFLETNGRTKVVSSPKITTLNNQQALISVGDNVNYRVQEESQNNNALNGKTTI 333 Query: 308 TTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----------PSYRV 353 T Y G++L+ P V +I LRI +S N D+ P Sbjct: 334 TYKQYSVFIGILLNILPEVSDDNKIMLRINPSLSS--FKYNEDDVRQSTTIREIAPDTIQ 391 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 +K T V++ SG TIVL GL+ + +P L IP+LG F++++ N TE+ Sbjct: 392 KKLSTVVQVNSGDTIVLGGLIAQSKGKENTKVPFLGDIPVLGHAFKSTKDNLRTTELVFI 451 Query: 414 ATPFLV 419 TP +V Sbjct: 452 ITPRIV 457 >gi|15595882|ref|NP_249376.1| type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|218893357|ref|YP_002442226.1| putative type II secretion system protein [Pseudomonas aeruginosa LESB58] gi|9946565|gb|AAG04074.1|AE004503_12 probable type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|218773585|emb|CAW29399.1| probable type II secretion system protein [Pseudomonas aeruginosa LESB58] Length = 803 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 12/191 (6%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295 G + G+ + + AL+ L+ P L + +SAS G GQ++ Sbjct: 547 GTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVT 606 Query: 296 KTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352 +S ++ D G+ L+ P + G + L + EVS + AG + + R Sbjct: 607 DGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKR 666 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 DT++ L G +VL GLL+D++Q +G+P LS +P +G+LFR + +R +T + + Sbjct: 667 A--IDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMV 724 Query: 413 AATPFLVKPVA 423 P++V+ A Sbjct: 725 FLRPYIVRDAA 735 >gi|293604906|ref|ZP_06687303.1| general secretion pathway protein D [Achromobacter piechaudii ATCC 43553] gi|292816734|gb|EFF75818.1| general secretion pathway protein D [Achromobacter piechaudii ATCC 43553] Length = 791 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 117/279 (41%), Gaps = 50/279 (17%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFS---- 246 QV ++ I EV + G Q +TG+ S+G S + GG ++ G S Sbjct: 426 QVLVESLIVEVSEQAAAEFGIQW-MTGAGNINSNGTSFIGGTNLGGSGITGNGPTSIDAL 484 Query: 247 --------VKGVLDRFSFETV-----LHALERATAIRTLAEPTLTAISGQSASFTSG--- 290 VKG +D + + A++ L+ P L + QSAS G Sbjct: 485 GSGLSLGVVKGTVDVLGNQVINLGVLARAMQNTGEANILSTPNLLTLDNQSASILVGKTV 544 Query: 291 ----GQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 GQ++ S S G++ ++ D G+ L+ P + G + L I EVS Sbjct: 545 PFVTGQYV---TSGSNGSSNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQEVSSIDES 601 Query: 339 ---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 P G+ R DT+V + G IVL GLL+D++ +P L +P++G Sbjct: 602 RSTPTTGIVTNK------RAIDTSVLIDDGQIIVLGGLLEDNVTLTSNSVPGLGSLPVIG 655 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +LFR R +T + + P++V+ A R S D Y Sbjct: 656 SLFRYDTRKRTKTNLMVFLRPYVVRD-ANRSASVTMDRY 693 >gi|296390960|ref|ZP_06880435.1| general secretion pathway protein D [Pseudomonas aeruginosa PAb1] Length = 786 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 12/191 (6%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295 G + G+ + + AL+ L+ P L + +SAS G GQ++ Sbjct: 530 GTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVT 589 Query: 296 KTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352 +S ++ D G+ L+ P + G + L + EVS + AG + + R Sbjct: 590 DGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKR 649 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 DT++ L G +VL GLL+D++Q +G+P LS +P +G+LFR + +R +T + + Sbjct: 650 A--IDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMV 707 Query: 413 AATPFLVKPVA 423 P++V+ A Sbjct: 708 FLRPYIVRDAA 718 >gi|162146314|ref|YP_001600773.1| general secretion pathway protein D [Gluconacetobacter diazotrophicus PAl 5] gi|209543683|ref|YP_002275912.1| general secretion pathway protein D [Gluconacetobacter diazotrophicus PAl 5] gi|161784889|emb|CAP54432.1| putative general secretion pathway protein D [Gluconacetobacter diazotrophicus PAl 5] gi|209531360|gb|ACI51297.1| general secretion pathway protein D [Gluconacetobacter diazotrophicus PAl 5] Length = 772 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 9/169 (5%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSV----TTHDYGV 314 + AL+ T + L+ P L ++A G + S SST TS+ T GV Sbjct: 554 IDALQNVTTVHVLSSPQLMVQDNRAARLQVGQLVPVQIGSQSSTIGTSIYNQFTYQPTGV 613 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 ++ TP V G + L + EVS NA P++ R + V + G T+ L Sbjct: 614 IMQVTPHVSEGGLVTLDVSQEVSSVSPTAASTANAASNPTFNDRSVSSRVVVQDGQTVGL 673 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 AGL+ D ++ GIP L IP+LG L N NR+ TE+ I TP ++ Sbjct: 674 AGLITDSSSRINSGIPWLKNIPVLGVLAGNQNNNRQRTELLILMTPHVI 722 >gi|311105841|ref|YP_003978694.1| general secretion pathway protein D [Achromobacter xylosoxidans A8] gi|310760530|gb|ADP15979.1| general secretion pathway protein D [Achromobacter xylosoxidans A8] Length = 790 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 113/261 (43%), Gaps = 41/261 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFS---- 246 QV ++ I EV + G Q +TG+ S G S + GG ++ G + Sbjct: 425 QVLVESLIVEVSEAKAAEFGIQW-MTGAGNINSDGTSFIGGTNLGGSGITGKGPTTIDGI 483 Query: 247 --------VKGVLDRFSFETV-----LHALERATAIRTLAEPTLTAISGQSASFTSG--- 290 VKG +D + + A+E L+ P L + QSAS G Sbjct: 484 GSGLTLGVVKGTVDVLGNKVINLGVLARAMENTGEANILSTPNLLTLDNQSASILVGKTV 543 Query: 291 ----GQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EP 339 GQ++ S S G+T ++ D G+ L+ P + G + L I EVS E Sbjct: 544 PFVTGQYV---TSGSNGSTNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQEVSSIDES 600 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 G + + R DT+V + G IVL GLL+D++ +PLL +P++G+LFR Sbjct: 601 RSNATTGIVTNKRA--IDTSVLIDDGQIIVLGGLLEDNVTLSTNSVPLLGSLPVIGSLFR 658 Query: 400 NSRFNREETEIFIAATPFLVK 420 R +T + + P++V+ Sbjct: 659 YDSRKRTKTNLMVFLRPYVVR 679 >gi|158521417|ref|YP_001529287.1| type II and III secretion system protein [Desulfococcus oleovorans Hxd3] gi|158510243|gb|ABW67210.1| type II and III secretion system protein [Desulfococcus oleovorans Hxd3] Length = 538 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 115/258 (44%), Gaps = 34/258 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQ---------HS-ITGSSSGP-----------------S 227 QV ++ I E +D +Q+G Q HS TG++ GP + Sbjct: 263 QVLIEAHIVETSKDTARQLGIQWGGVAKDKQHSWFTGATEGPAGQTLFDANGVPVAANPT 322 Query: 228 KSFAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 ++AA+F + G + L + L ALE + L+ P++T + +A Sbjct: 323 GNWAANFPASLGNTGLSLGYIYQDLGQSLIAAQLTALEEDGKLNILSSPSITTLDNSAAV 382 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA- 345 SG ++TV + ++ + L TP ++ + ++I+T E + NA Sbjct: 383 IESGRDVPFQTVEDNE--VNIEWKKAVLSLAVTPHIIDASTLRVKIKTHKDE-LDWSNAV 439 Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P+ + A+T + L G T V+ GL K Q + G+PLL +IPILG FR++ Sbjct: 440 LTDGNPTIITKNAETEMILFDGQTTVIGGLNKQSSSQSQFGVPLLGRIPILGFFFRSTSR 499 Query: 404 NREETEIFIAATPFLVKP 421 + + E+ I TP +++P Sbjct: 500 SNDMEEVLIFITPHILEP 517 >gi|330964738|gb|EGH64998.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 701 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 32/248 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGK--------------F 238 QV ++ I E D KQ+G + S S SG ++ D G F Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDDNGDEAGNTSGNLTSNVPF 507 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 508 VDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681 Query: 409 EIFIAATP 416 E+ + TP Sbjct: 682 ELLVFLTP 689 >gi|114571311|ref|YP_757991.1| general secretion pathway protein D [Maricaulis maris MCS10] gi|114341773|gb|ABI67053.1| general secretion pathway protein D [Maricaulis maris MCS10] Length = 686 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 109/237 (45%), Gaps = 16/237 (6%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKF--VSEGGDFSVKGV 250 QV ++ TIAEVR + G + GS+ S F+ G V G +++ G Sbjct: 424 QVLIEATIAEVRLEDGLDFGVRWYFENAGSNETSSLQFSDSNTGSTAPVFPGFNYAFSGT 483 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGA---- 304 L AL T + L+ P++ + Q+A G + + +T +S T + Sbjct: 484 ----DLTATLSALRSITDVTVLSAPSIMVQNNQTAHLQVGDEVPIVTQTATSVTESNAPI 539 Query: 305 -TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVEL 362 +SV + GV+L TP + + G + L + EVS +G D P+ + + +TV + Sbjct: 540 VSSVELRETGVILQVTPRINASGMVVLEVNQEVSSVRPTTTSGIDSPTIQKLEFTSTVSV 599 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 S TI L GL+++ + PLL IP +G LFRN + +E+ I TP ++ Sbjct: 600 RSSNTIALGGLIRETTSDNESRTPLLGDIPGVGNLFRNRAMTSQRSELVIFLTPRII 656 >gi|257125412|ref|YP_003163526.1| type II and III secretion system protein [Leptotrichia buccalis C-1013-b] gi|257049351|gb|ACV38535.1| type II and III secretion system protein [Leptotrichia buccalis C-1013-b] Length = 400 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 14/229 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGGKFVSEGGDFSVKGVL 251 ++QV +K TI + ++ +++G SI ++ +K + A F VS FS G Sbjct: 167 KEQVIIKGTIIDTSSNLFERLGIDWSINSDNANATKDNLVAKFLNGEVSIASIFSKGGRF 226 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVT 308 F + L+ IR A PTL + + + L KT T Sbjct: 227 LGIDF----NLLKENGDIRIEAMPTLMIMENEEGELKVTEEVLVGEKKTTKKDTEYVEPI 282 Query: 309 THDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELP 363 + G+V P + +I L+I TE+S + NA + + TT+ L Sbjct: 283 FSEAGIVFKINPEIRKINGIKKILLKIDTEISNFKLTSSYNASSGAKQK-NQTKTTITLN 341 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +GG+ + GL +D ++ +P+LSKIPI+G LF+ R NRE +I+I Sbjct: 342 NGGSTFIGGLKQDVSKETIRRVPVLSKIPIVGPLFKYRRTNRELRDIYI 390 >gi|299066099|emb|CBJ37280.1| putative type II secretory pathway, gspd-related protein [Ralstonia solanacearum CMR15] Length = 792 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 22/243 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 E +V L+V + EV RD L +G + S PS AA +G + G+ Sbjct: 338 EPEVMLEVEVLEVSRDRLTDLGIDWPNSFSLGTPSS--AATWGALHHLTVNQLTASGLSA 395 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATS 306 +F+ T LA P + + + A G + + SS + S Sbjct: 396 TANFKLT------DTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSGPVYSQS 449 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------YRV--RKADT 358 + D G+ L P V +G+++ EVS +++ + + Y++ R A T Sbjct: 450 IQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNSQTGLSSLAYQIGTRNAST 509 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 T+ L G T +L GL++D+ + IP L ++P+LG LF N + ++TEI + TP + Sbjct: 510 TLRLKDGETQILGGLIQDEDRDAANKIPGLGQLPVLGRLFSNHNGDHKKTEIVLQITPHI 569 Query: 419 VKP 421 V+P Sbjct: 570 VRP 572 >gi|329894543|ref|ZP_08270351.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC3088] gi|328922981|gb|EGG30307.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC3088] Length = 691 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 13/204 (6%) Query: 219 ITGSSSGPSKSFAADFGGKFVSE-GGDFSVKGVLDRFSFETV-LHALERATAIRTLAEPT 276 + GS S P S D G V+E G F+V G + F T L ALE +++P Sbjct: 486 LPGSVSLPG-SLLVDLG---VAEPAGSFAV-GFTSKDVFLTAELSALEAVGKGEVVSQPK 540 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI---Q 333 + Q AS SG + Y+ SS+ GAT+ + + L TP + RI L + Q Sbjct: 541 VITGDKQKASIKSGTEVPYQE-SSAGGATATQFKEAVLQLDVTPNITPDDRILLDLVINQ 599 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIPLLSKIP 392 + + V N G +P+ + T V + +G TIVL G+ + +D++++ + +P+L IP Sbjct: 600 DSIGDLVPSGNGGSIPTIDTTELTTQVLVGNGETIVLGGVFRTEDLEKVSK-VPVLGDIP 658 Query: 393 ILGALFRNSRFNREETEIFIAATP 416 I+G F++S +R +TE I TP Sbjct: 659 IMGQFFKSSSTSRTKTETLIFITP 682 >gi|167626079|ref|YP_001676373.1| general secretion pathway protein D [Shewanella halifaxensis HAW-EB4] gi|167356101|gb|ABZ78714.1| general secretion pathway protein D [Shewanella halifaxensis HAW-EB4] Length = 720 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 17/179 (9%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F ++ A+ T LA P++T + Q ASF G + T S ++ +V Sbjct: 443 FGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVER 502 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGT 367 + GV L P V + L I+ EVS G+N G ++ R+ TTV SG Sbjct: 503 KEVGVKLKVVPQVNEGNAVKLTIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQI 558 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +VL GL+K+++Q+ + +P L IPI+G LF++S +++T + + +KP +RD Sbjct: 559 VVLGGLIKEEVQESVQKVPFLGDIPIIGHLFKSSSSGKKKTNLMV-----FIKPTIIRD 612 >gi|330971735|gb|EGH71801.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 701 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 32/248 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGK--------------F 238 QV ++ I E D KQ+G + S S SG ++ D G F Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAGNTGSSVTSNVPF 507 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 508 VDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681 Query: 409 EIFIAATP 416 E+ + TP Sbjct: 682 ELLVFLTP 689 >gi|323498120|ref|ZP_08103124.1| type IV pilus biogenesis protein PilQ [Vibrio sinaloensis DSM 21326] gi|323316831|gb|EGA69838.1| type IV pilus biogenesis protein PilQ [Vibrio sinaloensis DSM 21326] Length = 561 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 +R + ++ P L + + A G + Y SSS+GATSVT + L TP + Sbjct: 403 QRESKAEVISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQIT 461 Query: 324 SPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 R+ L + P V+ G+ + ++ T V + +G T+VL G+ + + Sbjct: 462 PDNRLVLDLSVTQDRPGDVVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHSVTDT 521 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL +P+LGALFR S ++E+ I TP +V Sbjct: 522 VDKVPLLGDLPVLGALFRRSYQQMGKSELLIFVTPKVV 559 >gi|77361610|ref|YP_341185.1| mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Pseudoalteromonas haloplanktis TAC125] gi|76876521|emb|CAI87743.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Pseudoalteromonas haloplanktis TAC125] Length = 552 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 22/211 (10%) Query: 231 AADFGGKF-VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 A +FG S GG S+ ++R F V++ LE ++ L+ P +TA + Q A Sbjct: 324 AGNFGNNLSASLGGVSSL--TIERGDFNGVINLLETQGDVQMLSNPRVTATNNQKAVIKV 381 Query: 290 GGQHLYKT----------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEV 336 G + T ++++ +T G+ L TP + G + L + TE Sbjct: 382 GQDEYFVTNVSSTTVTGTSTTTSPEIDLTPFFSGIALDVTPQIDKYGSVILHVHPSVTET 441 Query: 337 SEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 E + + D + +R++DT + SG +V+ GL++ Q + P+L Sbjct: 442 QEQLKVITLDDQRFELPLAQSNIRESDTVIRAQSGEIVVIGGLMQTSTQDEETKTPILGD 501 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKP 421 IPI G LF+N R +E+ E+ I P +V P Sbjct: 502 IPIFGNLFKNIRKRQEKKELIILIRPTVVMP 532 >gi|332160534|ref|YP_004297111.1| general secretion pathway protein D [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664764|gb|ADZ41408.1| general secretion pathway protein D [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 648 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 14/182 (7%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 +++ + AL + LA P++ + A F G Q + S+ T AT S++ Sbjct: 416 NWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 474 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366 GV+L P + + L I+ EVS VNA ++ S + R + V + SG Sbjct: 475 QSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSVFNKRVVNNAVLVKSGE 534 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T+V+ GLL I ++ +PLL IP +G LFR S+ E++ + + ++P +R+ Sbjct: 535 TVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQSKEKIEKSNLIL-----FIRPTILRE 589 Query: 427 LS 428 S Sbjct: 590 TS 591 >gi|283480139|emb|CAY76055.1| Protein transport protein hofQ precursor [Erwinia pyrifoliae DSM 12163] Length = 414 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 7/233 (3%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250 +Q+ L I + + L+++G ++G + + + G V G Sbjct: 181 EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLRVDLAT-GRPAGVVGFTLA 239 Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 LD + L ALE +A P L Q+AS G + Y+ + ++G+T++ Sbjct: 240 KLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTEIPYEVSTGNSGSTTMEF 299 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGT 367 + + + TP V + GRI L++ + P + +G+ + K DT V L G T Sbjct: 300 KEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLTIDKQEIDTQVMLKDGQT 359 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + L G+ + +P L IP+LG LFR+ ++ E+ I TP L++ Sbjct: 360 LALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRRELVIFITPRLIR 412 >gi|310765643|gb|ADP10593.1| Protein transport protein hofQ precursor [Erwinia sp. Ejp617] Length = 414 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 7/233 (3%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250 +Q+ L I + + L+++G ++G + + + G V G Sbjct: 181 EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLRVDLAT-GRPAGVVGFTLA 239 Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 LD + L ALE +A P L Q+AS G + Y+ + ++G+T++ Sbjct: 240 KLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTEIPYEVSTGNSGSTTMEF 299 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGT 367 + + + TP V + GRI L++ + P + +G+ + K DT V L G T Sbjct: 300 KEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLTIDKQEIDTQVMLKDGQT 359 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + L G+ + +P L IP+LG LFR+ ++ E+ I TP L++ Sbjct: 360 LALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRRELVIFITPRLIR 412 >gi|114798909|ref|YP_761208.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444] gi|114739083|gb|ABI77208.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444] Length = 694 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 16/173 (9%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGA---TSVTTHD 311 V++AL + + ++ P + ++ ++A G Q T S S GA S T D Sbjct: 500 VINALAATSDVEIVSSPRMLVLNNETARLQVGDQVPIITQSAVSVSDPGAPVVNSTTYRD 559 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-----DMPSYRVRKADTTVELPSGG 366 GV+L TP + R G ++ ++S+ V GV+ D P+ R + + +P G Sbjct: 560 TGVILTVTPRI----RAGGMVEVDISQEVSGVSETTTSSIDSPTISQRSIQSVLAVPDGS 615 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T VL GL+ + GIP+L P+LGA FR++ + TE+ + P +V Sbjct: 616 TAVLGGLMSSTRSYSRTGIPILKDTPVLGAAFRSTNQSERRTELIVLIEPTVV 668 >gi|182678562|ref|YP_001832708.1| general secretion pathway protein D [Beijerinckia indica subsp. indica ATCC 9039] gi|182634445|gb|ACB95219.1| general secretion pathway protein D [Beijerinckia indica subsp. indica ATCC 9039] Length = 801 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 12/175 (6%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGAT-----SVTTHD 311 V++AL T ++ L+ P+L + Q A G Q L + +S+ A SV D Sbjct: 610 VINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANPAIVNSVDYKD 669 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G++L+ P V + G + L I+ ++S P+ R+ +T+ +P+G T++LA Sbjct: 670 TGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIAIPNGQTVLLA 729 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+++ + G+P++SKI L L N + TE+ + +KP +R+ Sbjct: 730 GLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIM-----FIKPQILRN 779 >gi|94267441|ref|ZP_01290880.1| type II and III secretion system protein:Secretin/TonB, short-like [delta proteobacterium MLMS-1] gi|93452009|gb|EAT02711.1| type II and III secretion system protein:Secretin/TonB, short-like [delta proteobacterium MLMS-1] Length = 555 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 22/198 (11%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSS 300 GG F++ DR +F + L+ + L+ P + + Q A G + T VS Sbjct: 333 GGVFTMAA--DRSNFHAFIELLKTQGDVHVLSSPRVATTNNQKALIKVGNDEYFVTDVSF 390 Query: 301 STGATSVTTHDY----------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AG 346 ST T Y G+ L TPT+ + L I+ VS+ AG Sbjct: 391 STRTTGTDDTIYPDLELTPFFSGIALDVTPTITDGNEVILHIRPSVSQVRDQTKSFTVAG 450 Query: 347 DMPSY-----RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 S R+R++D+ V SG I++ GL++D ++ + G+P L +P++G LFR Sbjct: 451 QTQSLPLALSRMRESDSIVRARSGQVIIIGGLMEDSWREQRAGLPGLGDLPLVGNLFRQQ 510 Query: 402 RFNREETEIFIAATPFLV 419 R+++ +TE+ I P +V Sbjct: 511 RWSQRKTELVILLRPVVV 528 >gi|197117672|ref|YP_002138099.1| type II secretion system secretin lipoprotein PulQ [Geobacter bemidjiensis Bem] gi|197087032|gb|ACH38303.1| type II secretion system secretin lipoprotein PulQ [Geobacter bemidjiensis Bem] Length = 868 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 19/186 (10%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPG 326 TL+ P + + + A F G + T SS +G + +V D GV ++ PT+ Sbjct: 427 ETLSNPKIRVKNREKAKFNVGTRVPITTTSSPSGGGVSVNVQYVDVGVKVNAEPTIQLNN 486 Query: 327 RIGLRIQTEVS----EPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + +++ EVS E IG + A + + R DT + L G T ++ GL++ Sbjct: 487 EVAIKLGLEVSSILNEKTIGTDQATTVVTIGTRNLDTVLSLKDGETSIIGGLIQKTQTDS 546 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 K + LL IPILG LF N+ +++TE+ +A TP +V+ V + D +D Sbjct: 547 KSKVFLLGDIPILGPLFSNTSDKKDKTELLLAITPRIVRGVTVPD-----------NDVA 595 Query: 442 AFFFNR 447 AF+ R Sbjct: 596 AFWSGR 601 >gi|152986567|ref|YP_001350166.1| putative type II secretion system protein [Pseudomonas aeruginosa PA7] gi|150961725|gb|ABR83750.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] Length = 803 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 20/195 (10%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295 G + G+ + + AL+ L+ P L + +SAS G GQ++ Sbjct: 547 GTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVT 606 Query: 296 KTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDM 348 +S ++ D G+ L+ P + G + L + EVS V GV Sbjct: 607 DGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVSSVDERASTVAGVVTNK- 665 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R DT++ L G +VL GLL+D++Q +G+P LS +P +G+LFR + +R +T Sbjct: 666 -----RAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKT 720 Query: 409 EIFIAATPFLVKPVA 423 + + P++V+ A Sbjct: 721 NLMVFLRPYIVRDAA 735 >gi|109896501|ref|YP_659756.1| pilus (MSHA type) biogenesis protein MshL [Pseudoalteromonas atlantica T6c] gi|109698782|gb|ABG38702.1| pilus (MSHA type) biogenesis protein MshL [Pseudoalteromonas atlantica T6c] Length = 550 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 39/235 (16%) Query: 215 FQHSITGSSSGPSKSFAADFGG----KFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 FQ S T S G + +A GG FV++ DFS VL+ L+ ++ Sbjct: 314 FQFSTTAGSLG--DAISASLGGITSLSFVNK--DFS-----------GVLNLLQTQGNVQ 358 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFT 319 L+ P +TAI+ Q A G + T SS +T G+ L T Sbjct: 359 VLSSPRVTAINNQKAVIKVGDDEYFVTDVSSQSTVTAATSSTTPNIELTPFFSGIALDVT 418 Query: 320 PTVLSPGRIGLR-----IQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVL 370 P + + G + L I+TE E V+ +N + + +R++DT + SG +V+ Sbjct: 419 PQIDAQGGVLLHVHPSVIETEEQEKVVTLNEEQFVLPLAASNIRESDTIIHARSGEIVVI 478 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 GL++ I + + PLL IP+LG LF+N + + E+ I P +V R Sbjct: 479 GGLMQSIISETESKTPLLGDIPLLGNLFKNRQETETKKELVILLRPTVVGADTWR 533 >gi|28870471|ref|NP_793090.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato str. DC3000] gi|28853718|gb|AAO56785.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato str. DC3000] Length = 763 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALE + L+ P+L ++ Q A G + +++T +SV Sbjct: 559 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTATNTTLSSVE 618 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS+ G + D+ P R T V SG Sbjct: 619 YVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRSVSTQVAAQSG 678 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF NS +++ TE+ + TP ++ Sbjct: 679 QTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLITPRVI 732 >gi|330958318|gb|EGH58578.1| general secretion pathway protein D [Pseudomonas syringae pv. maculicola str. ES4326] Length = 784 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 12/188 (6%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G ++ G+ + + + AL+ L+ P L + ++AS G + T S T Sbjct: 532 GAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVT 591 Query: 303 GA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352 G +V + G+ L+ P + G + L I EVS + + AG + + R Sbjct: 592 GGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSSVDQRASLEAGTVTNKR 651 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 DT++ L G +VL GLL+D Q +P LS IP+LG LFRN + +T + + Sbjct: 652 A--IDTSILLDDGQIMVLGGLLQDGYNQSNNAVPWLSNIPLLGVLFRNEARSTSKTNLMV 709 Query: 413 AATPFLVK 420 P++++ Sbjct: 710 FLRPYIIR 717 >gi|110833294|ref|YP_692153.1| general (type II) secretion pathway protein D [Alcanivorax borkumensis SK2] gi|110646405|emb|CAL15881.1| general (type II) secretion pathway protein D [Alcanivorax borkumensis SK2] Length = 710 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 35/255 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------ 242 Q+ ++ I E+ + K +GFQ+ + G A +FGG +S Sbjct: 365 QILIEAAIVEISGEQGKNLGFQYVGGSNEDGVG---AVNFGGNGLSVNSVVQALASDDPS 421 Query: 243 ----GDFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 GD G+ + S + ++ AL ++ + L+ P++ + + AS G Sbjct: 422 GLSLGDGITAGLGETDSDGDLKWGALIQALSTSSDVNLLSTPSILTLDNEEASIIVGENV 481 Query: 294 LYKT-VSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + T S++TG+ T++ D G+ L TP V G +R++ E + +AG Sbjct: 482 PFVTGQSTNTGSGVSNPFTTIQREDVGLTLKVTPHV--AGLSTIRLELEQESSAVKDSAG 539 Query: 347 DMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 D RK +TV TI L GL+KDDI+ +P L IP+LG LFR++ + Sbjct: 540 DAVDIVTTTRKLQSTVLADDAETIALGGLIKDDIRVTVRKVPFLGDIPVLGFLFRSTSKD 599 Query: 405 REETEIFIAATPFLV 419 R ++ + + P ++ Sbjct: 600 RVKSNLMVFLKPTIL 614 >gi|90416464|ref|ZP_01224395.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2207] gi|90331663|gb|EAS46891.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2207] Length = 754 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 6/196 (3%) Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G S A D G + G FS+ + D F + L ALE +++P + Q Sbjct: 557 GLGDSLAVDLG--VDNPTGSFSLGYLTDNFLIDLELSALESDGFGEIVSQPKVLTGDKQQ 614 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV- 343 A SG + Y+ +SS GATS+ + + L TP + RI + + VS+ +G Sbjct: 615 AVIKSGTEIAYQKATSS-GATSIEFKEAVLQLEVTPQITPDNRIIMDLL--VSQDSVGAF 671 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 PS + + +T + +G T+VL G+ + + + +PLL +P LG LFRN Sbjct: 672 TPTGEPSIDITQIETQALVGNGQTLVLEGIFQTEEVNGTDKVPLLGDLPFLGKLFRNDLR 731 Query: 404 NREETEIFIAATPFLV 419 N E+ EI TP ++ Sbjct: 732 NIEKREILSFITPKII 747 >gi|325275757|ref|ZP_08141634.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51] gi|324099108|gb|EGB97077.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51] Length = 310 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 125/280 (44%), Gaps = 33/280 (11%) Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV-ILIGHDGKQMLNLDILIER 118 L++PV ++ V V +P ADV R + + VGQ N +++ + ++ R Sbjct: 49 LRLPVAIERVAVGEPKVADVQASGERGVVI--TAVGQGNTSLMMWTACTPSPHKAMVFVR 106 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 A +M F+ + + + +Q R VE+ + ++G + Sbjct: 107 GRASADMAQDSFLPSQDTQ------------LPSQVQADIRFVEVRRSKYKEAGARLFFK 154 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ +L+ G T+ T+ VR D + G+ +G + AD Sbjct: 155 GSNN---SLIGSPG----TVPNTV--VRPDY---------VPGAQTGENPIAYADVRPGI 196 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + F++ F +++ALE + TLA P+LT +SGQ+ASF +GG+ Sbjct: 197 PLDNSVFNIVWGGGSSRFLAMINALENSGFAYTLARPSLTVLSGQTASFLAGGEIPIPVP 256 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 S+ + S+ ++GV L TPTV+S GRI L++ EVSE Sbjct: 257 SAGSDNVSIEYKEFGVRLALTPTVISQGRITLKVAPEVSE 296 >gi|289549028|ref|YP_003474016.1| general secretion pathway protein D [Thermocrinis albus DSM 14484] gi|289182645|gb|ADC89889.1| general secretion pathway protein D [Thermocrinis albus DSM 14484] Length = 637 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 14/190 (7%) Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTHDY---GVVLHF 318 LE+ T L+ P L + Q A G + + V V T+DY G+ L Sbjct: 445 LEKGTGFNLLSNPKLLTLDNQPAEIKVGQVVPFASGVKFDINGQPVITYDYKEVGLDLRI 504 Query: 319 TPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 TP+V S + L I +V E P IG + +P R+ ++ V + +G TI++ G Sbjct: 505 TPSV-SEKNLRLSISLQVQEIIDFLRPQIGTLSYAVPVTSNRQVNSEVVVENGQTIIIGG 563 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR-PD 431 L+ + EG+P L +P+LG LF+ ++ +FI TP++++ + +LSR Sbjct: 564 LINTRALRSTEGVPGLQDVPVLGWLFKRKTTQEDKVSLFIFITPYVIE--SPEELSRITQ 621 Query: 432 DHYSVEDDAK 441 +H + D+ + Sbjct: 622 EHQKLADELR 631 >gi|325275672|ref|ZP_08141565.1| type IV pilus secretin PilQ [Pseudomonas sp. TJI-51] gi|324099192|gb|EGB97145.1| type IV pilus secretin PilQ [Pseudomonas sp. TJI-51] Length = 418 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 9/226 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 QV ++ I E D K +G + + G + P KS D G V G G+L Sbjct: 186 QVAIEARIVEANVDYEKALGVRWGSPLYGDNPLPGKSLFVDLG---VERAGSSIGLGLLR 242 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + L A+E++ +++P + ++A G + Y+ + S GATSV+ + Sbjct: 243 GDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETTKS-GATSVSFRE 301 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVL 370 + L TP + ++ + ++ EP VNA ++P R + + V + G TIV+ Sbjct: 302 ASLSLEVTPQITPDNKVIMAVRVTKDEPDY-VNALNNVPPIRKNEVNAKVRVADGETIVI 360 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 G+ + + +P L +P +G LFR +++E+ + TP Sbjct: 361 GGVYSTSQNNVVDKVPFLGDLPYVGRLFRRDALQEKKSELLVFLTP 406 >gi|213970091|ref|ZP_03398223.1| type II and III secretion system protein [Pseudomonas syringae pv. tomato T1] gi|301381448|ref|ZP_07229866.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato Max13] gi|302061436|ref|ZP_07252977.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato K40] gi|302133002|ref|ZP_07258992.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925195|gb|EEB58758.1| type II and III secretion system protein [Pseudomonas syringae pv. tomato T1] Length = 775 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALE + L+ P+L ++ Q A G + +++T +SV Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTATNTTLSSVE 630 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS+ G + D+ P R T V SG Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRSVSTQVAAQSG 690 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF NS +++ TE+ + TP ++ Sbjct: 691 QTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLITPRVI 744 >gi|167036119|ref|YP_001671350.1| type IV pilus secretin PilQ [Pseudomonas putida GB-1] gi|166862607|gb|ABZ01015.1| type IV pilus secretin PilQ [Pseudomonas putida GB-1] Length = 420 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 7/225 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I E D K +G + + G+ P K D G + GG + + Sbjct: 188 QVAIEARIVEANVDYEKSLGVRWGGPLYGAQLRPGKELFVDLGVE--RAGGSIGLGLLRG 245 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + L A+E++ +++P + ++A G + Y+ S S GATSV+ + Sbjct: 246 DVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQS-GATSVSFREA 304 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371 + L TP + ++ + ++ EP VNA ++P R + + V + G TIV+ Sbjct: 305 SLSLEVTPQITPDNKVIMTVRVTKDEPDY-VNALNNVPPIRKNEVNAKVRVADGETIVIG 363 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 G+ + + +P +P +G LFR +++E+ + TP Sbjct: 364 GVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 408 >gi|149377297|ref|ZP_01895043.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter algicola DG893] gi|149358394|gb|EDM46870.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter algicola DG893] Length = 694 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 3/176 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F+V D F + L ALE +++P + Q+A SG + Y+ SSS GA Sbjct: 517 FAVGWGSDDFLVDLELSALESDGQAEVVSQPRVVTADRQTAKIKSGEEIPYQEASSS-GA 575 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 TSV+ + + L TP + +I + + V++ G +P+ + T V + + Sbjct: 576 TSVSFKEAALSLEVTPQITPDDKIIMDLV--VNQDSRGEVTAGIPAINTNEVTTQVLVGN 633 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+VL G+ + ++ P L IP LG LF+ + E +E+ I TP ++K Sbjct: 634 GETVVLGGIFQSEVATTTTKTPFLGDIPYLGRLFKRTEHIDERSELLIFITPKIIK 689 >gi|259910041|ref|YP_002650397.1| putative outer membrane porin HofQ [Erwinia pyrifoliae Ep1/96] gi|224965663|emb|CAX57195.1| outer membrane porin [Erwinia pyrifoliae Ep1/96] Length = 406 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 7/233 (3%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250 +Q+ L I + + L+++G ++G + + + G V G Sbjct: 173 EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLRVDLAT-GRPAGVVGFTLA 231 Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 LD + L ALE +A P L Q+AS G + Y+ + ++G+T++ Sbjct: 232 KLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTEIPYEVSTGNSGSTTMEF 291 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGT 367 + + + TP V + GRI L++ + P + +G+ + K DT V L G T Sbjct: 292 KEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLTIDKQEIDTQVMLKDGQT 351 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + L G+ + +P L IP+LG LFR+ ++ E+ I TP L++ Sbjct: 352 LALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRRELVIFITPRLIR 404 >gi|302189475|ref|ZP_07266148.1| type II and III secretion system protein:NolW-like:NolW-like [Pseudomonas syringae pv. syringae 642] Length = 701 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 14/212 (6%) Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L G + TG+S GP+ F D G + G + V + + L A+E+ Sbjct: 487 LDNRGDEAGNTGNSLGPNIPFV-DLGAADATTG--IGLGFVTNNTLLDLELSAMEKTGNG 543 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI Sbjct: 544 EIVSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRII 602 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + ++ EP V+GV P + + + V + G TIV+ G+ + ++ + Sbjct: 603 MEVKVTKDEPDYLNAVLGV-----PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDK 657 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +P L +P LG LFR + ++E+ + TP Sbjct: 658 VPFLGDVPYLGRLFRRDVVSESKSELLVFLTP 689 >gi|223040615|ref|ZP_03610885.1| type II and III secretion system protein [Campylobacter rectus RM3267] gi|222878073|gb|EEF13184.1| type II and III secretion system protein [Campylobacter rectus RM3267] Length = 513 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 22/186 (11%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSV 307 F+ + VL+ LE + ++ P +T ++ Q A + G Y+ S G T++ Sbjct: 306 FNLDGVLNFLETNGKTKVISSPKITTLNNQQALISVGDNVNYRVQEESQNNNSLNGKTTI 365 Query: 308 TTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----------PSYRV 353 T Y G++L+ P V +I LRI +S N D+ P Sbjct: 366 TYKQYSVFIGILLNILPEVSDDNKIMLRINPSLSS--FKYNEDDVRQSTKIREIAPDTIQ 423 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 +K T V++ SG TIVL GL+ + +P L IP+ G F++++ N TE+ Sbjct: 424 KKLSTVVQVNSGDTIVLGGLIAQSKGKENTKVPFLGDIPVFGNAFKSTKDNIRTTELVFI 483 Query: 414 ATPFLV 419 TP +V Sbjct: 484 ITPRIV 489 >gi|167834842|ref|ZP_02461725.1| general secretion pathway protein D [Burkholderia thailandensis MSMB43] Length = 749 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 102/249 (40%), Gaps = 27/249 (10%) Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLA 273 +SI ++G S A S +V + + F + +L + L+ Sbjct: 444 NSIINLTAGNGTSTGAGVAANLASLNQGLNVGWLHNMFGVQGLGALLQYFAGVSDANVLS 503 Query: 274 EPTLTAISGQSASFTSGGQ-----HLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSP 325 P L + + A G Y ++S T + T+D G+ LH P + Sbjct: 504 TPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTNNAFNTYDRRDVGLTLHVKPQITDG 563 Query: 326 GRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G + L++ TE S NA PS+ R +T+ +G IVL GL++D Q Sbjct: 564 GILKLQLYTEDSAVETSTQNAVTGPSFTKRSIQSTILADNGEIIVLGGLMQDSYQVANSK 623 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +PLL IP LG LFR+ R++T + + ++PV + D + A+A Sbjct: 624 VPLLGDIPWLGQLFRSESKQRKKTNLMV-----FLRPVIIND----------RETAQAVT 668 Query: 445 FNRVNKIYG 453 NR + I G Sbjct: 669 ANRYDYIQG 677 >gi|89075297|ref|ZP_01161724.1| MSHA biogenesis protein MshL [Photobacterium sp. SKA34] gi|89048978|gb|EAR54546.1| MSHA biogenesis protein MshL [Photobacterium sp. SKA34] Length = 541 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 34/259 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI-----TGSSSGPSKSFAADFGGKFVSE--GGDFSV 247 QV L+ I EV D Q G S G ++G + A GG +SE GG ++ Sbjct: 268 QVVLEAKIMEVTLDDSYQQGINWSYLTKSGNGITTGTASIVEALPGGNAISELLGGQTNI 327 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305 L +F+ V+ L + L+ P +TA + Q A GG + T SS+ + Sbjct: 328 --TLSDGNFKAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGD 385 Query: 306 --------SVTTHDYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAG---D 347 S+T G+ L TP + G + L + Q E +G Sbjct: 386 NNNVSPDVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVIDVQNEQKTIEVGTEKPMVLP 445 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + +R++D+ + +G +V+ GL+K I +PLL IP +G LFR+ +++ Sbjct: 446 LAKSTIRESDSIIHARTGDVVVIGGLMKSSINDQVSKVPLLGDIPWVGNLFRHINKVKKK 505 Query: 408 TEIFIAATPFLVKPVAMRD 426 TE+ I L+KP + D Sbjct: 506 TELVI-----LLKPTVVTD 519 >gi|222099578|ref|YP_002534146.1| ComE protein [Thermotoga neapolitana DSM 4359] gi|221571968|gb|ACM22780.1| ComE protein [Thermotoga neapolitana DSM 4359] Length = 1282 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P + SG+ A G + Y T ++ G V + G+ L TP V S I L Sbjct: 1135 LASPRIVTTSGKEAKILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELD 1194 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + + SEP G ++P R R+A T + + + TIV+ GL+++ + +P + Sbjct: 1195 LFVKASEP--GNYINEVPGERTREATTHLIVKNNSTIVIGGLIREVTNMSESKLPFFGDL 1252 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++G FR ++E+ ++ I T +V+P Sbjct: 1253 PVIGQFFRTKSESKEKRDLMIFVTVRVVEP 1282 >gi|95928759|ref|ZP_01311505.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] gi|95135104|gb|EAT16757.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] Length = 727 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 4/169 (2%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD + L ALE + + ++ P + A+ G++A G + YKT S + T Sbjct: 562 LDTIVLDLQLSALESSGGGKVISSPKVMALDGETARIGQGTEIPYKTTSDNGTTTEFKKA 621 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + + L TP + I L I S P GV D + ++A+T + L +G T V+ Sbjct: 622 E--LALEVTPLINPDNTILLEILATNSSP--GVAYTDGVAINTKEAETKLLLKNGETTVI 677 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ ++ Q G P L +P +G LF+ + + TE+ I TP +V Sbjct: 678 GGIYTENEQNSDSGTPYLKDLPFIGNLFKYKTSSNDRTELLIFLTPHIV 726 >gi|90412971|ref|ZP_01220969.1| putative MSHA biogenesis protein MshL [Photobacterium profundum 3TCK] gi|90325986|gb|EAS42425.1| putative MSHA biogenesis protein MshL [Photobacterium profundum 3TCK] Length = 559 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 78/261 (29%), Positives = 109/261 (41%), Gaps = 36/261 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSF-----AADFGGKFVSE--GGDFS 246 QV L+ I EV Q G S IT S G F AA GG +S GG + Sbjct: 284 QVVLETKIMEVTLSDGYQQGVNWSNITSSIGGTDIIFGRTGPAALPGGDAISSLLGGQTN 343 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TG 303 V + +FE VL LE + L+ P +TA + Q A GG + T S +G Sbjct: 344 V--TISDGNFEAVLSFLETQGDLNVLSSPRVTAANNQKAVIKVGGDQYFVTDISGGEVSG 401 Query: 304 ATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPV-----------IGVNA 345 S + D G+ L TP + G + L + V E V GV Sbjct: 402 DNSTSAPDIELTPFFSGISLDVTPQIDDEGGVLLHVHPTVVEVVNETKDIDLGATFGVYK 461 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + +R++D+ + SG +V+ GL+K I +P L IP LG LFRN + Sbjct: 462 LPLAKSSIRESDSVIFARSGDVVVIGGLMKSAINDQVSKVPFLGDIPGLGHLFRNVNKVQ 521 Query: 406 EETEIFIAATPFLVKPVAMRD 426 +TE+ I L+KP + D Sbjct: 522 SKTELVI-----LLKPTVVDD 537 >gi|326423839|ref|NP_760349.2| pilus (MSHA type) biogenesis protein MshL [Vibrio vulnificus CMCP6] gi|319999208|gb|AAO09876.2| pilus (MSHA type) biogenesis protein MshL [Vibrio vulnificus CMCP6] Length = 548 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 74/269 (27%), Positives = 113/269 (42%), Gaps = 31/269 (11%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++V L I+ E QV L+ I EV Q G S +S G S S + G Sbjct: 256 REVRQFLGISQERMQRQVILEAKILEVTLSDGYQQGINWSNISASIGNSGSIVVNRPGST 315 Query: 239 VSEGGDF--SVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 V G D S+ G + SFE VL + + L+ P +TA + Q A G Sbjct: 316 VLPGLDAIGSLLGGQTNVTISDGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGN 375 Query: 292 QHLYKT-VSSSTG---------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSE 338 Y T +SS+ G ++T G+ L TP + G + L + EV E Sbjct: 376 DQYYVTALSSNVGNDDKSKAVPEVTLTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEE 435 Query: 339 PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 +N G + +R++D+ + G +V+ GL+K + + +P L Sbjct: 436 ETKQLNLGGDFQNVTLPLAKSSIRESDSVIRARDGDVVVIGGLMKSNTIERVSKVPFLGD 495 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG LFRN+ ++TE+ I P +V Sbjct: 496 IPALGHLFRNTSNLTQKTELVILLKPTVV 524 >gi|91791490|ref|YP_561141.1| type II and III secretion system protein [Shewanella denitrificans OS217] gi|91713492|gb|ABE53418.1| type II and III secretion system protein [Shewanella denitrificans OS217] Length = 705 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 17/179 (9%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGAT----SVTT 309 F ++ A+ T LA P++T + Q ASF G + L + +SS G +V Sbjct: 449 FGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNANPFQTVER 508 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGT 367 + GV L TP + + L I+ EVS G+N G ++ R+ TTV SG Sbjct: 509 KEVGVKLKVTPQINEGTAVKLTIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQI 564 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +VL GL+ +++Q+ + +P L IP +G LF++S ++++ + + +KP +RD Sbjct: 565 VVLGGLINEEVQESIQKVPFLGDIPFIGHLFKSSSSSKKKKNLMV-----FIKPTIIRD 618 >gi|294142779|ref|YP_003558757.1| type IV pilus biogenesis protein PilQ [Shewanella violacea DSS12] gi|293329248|dbj|BAJ03979.1| type IV pilus biogenesis protein PilQ [Shewanella violacea DSS12] Length = 643 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 104/247 (42%), Gaps = 23/247 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSF--AADFGGKFVSEGGD------ 244 QV ++ + V+ ++ + +G Q IT + G S S A G + D Sbjct: 394 QVLIEARMVTVKDNVSEDLGIQWGITDQQGTRGTSGSIEGAESIAGGLIPALADRLNVAL 453 Query: 245 ----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 F V + D + L ALE+ +A P + S Q A++ G + Sbjct: 454 PAPAGAASIAFHVARLADGTILDMELSALEQENKGEIIASPRIMT-SNQKAAYIEQGVQI 512 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYR 352 SSS+GA +V+ + L TP + R+ L I + V+ G+ S Sbjct: 513 PYVESSSSGAATVSFKKAVLSLRVTPQITPDNRVILDLEITQDSQGEVVATPLGEAVSID 572 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 ++ T V + G TIVL G+ + ++ +P+L IP LG LFR++ E E+ I Sbjct: 573 TQRIGTQVLVNHGETIVLGGIYQQNLISRVSKVPILGDIPFLGFLFRSTSDKNERQELLI 632 Query: 413 AATPFLV 419 TP ++ Sbjct: 633 FVTPKII 639 >gi|326796602|ref|YP_004314422.1| general secretion pathway protein D [Marinomonas mediterranea MMB-1] gi|326547366|gb|ADZ92586.1| general secretion pathway protein D [Marinomonas mediterranea MMB-1] Length = 623 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 25/214 (11%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 P+ S G + GD ++ G+L A+E + L+ P + + Q + Sbjct: 392 PTLSNGITVGAASFNSDGDLNMAGIL---------QAIESNSNSNLLSTPKIMTLDNQKS 442 Query: 286 SFTSGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEP 339 G ++T SSS+ + + D G+ L TP + + + + + E + P Sbjct: 443 KILVGETRPFQTGGYSDSSSSAFVTTSREDIGLTLEVTPHINADNEVKMEVNQIVEAASP 502 Query: 340 VIGVNAGDMPSYRV-RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 A + + R+ +TTV + TIVL GL++D++ ++++ +PLL IPILGALF Sbjct: 503 ----EASSLGTITTKREIETTVIAGNRKTIVLGGLIEDNVVEVEQKVPLLGDIPILGALF 558 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 R+ + + + + ++P +R +D Sbjct: 559 RSKSYENNKKNLLV-----FIRPTILRSAVEAED 587 >gi|242281104|ref|YP_002993233.1| general secretion pathway protein D [Desulfovibrio salexigens DSM 2638] gi|242123998|gb|ACS81694.1| general secretion pathway protein D [Desulfovibrio salexigens DSM 2638] Length = 671 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 11/170 (6%) Query: 255 SFETV---LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-GATSVTTH 310 SF T+ ++ + AT ++ P + + A G YKT SST G V+T+ Sbjct: 447 SFPTIGALVNFTKSATDFNLISAPQIMTLDNAEAEIFVGQNRPYKTGQSSTSGDAVVSTY 506 Query: 311 DY---GVVLHFTPTV-LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +Y G+ L TP + G + L++ + V + ++P RK DTTV L G Sbjct: 507 EYKDVGIKLKITPRINREDGLVKLKVY-QTYNTVSEASTTELPITNDRKTDTTVLLADGS 565 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF--NREETEIFIAA 414 T+V+ GL++ D + + G+P LS +P+LG LF+ + N+ +F++A Sbjct: 566 TMVIGGLIRADHTRTEAGVPYLSDLPLLGWLFKTTSNSGNKNTLMVFLSA 615 >gi|332308478|ref|YP_004436329.1| pilus (MSHA type) biogenesis protein MshL [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175807|gb|AEE25061.1| pilus (MSHA type) biogenesis protein MshL [Glaciecola agarilytica 4H-3-7+YE-5] Length = 552 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 104/235 (44%), Gaps = 39/235 (16%) Query: 215 FQHSITGSSSGPSKSFAADFGG----KFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 FQ S T S G + +A GG FV++ DFS VL+ L+ ++ Sbjct: 316 FQFSTTSGSLG--DAISATLGGVTSLSFVNK--DFS-----------GVLNLLQTQGNVQ 360 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFT 319 L+ P +TAI+ Q A G + T SS +T G+ L T Sbjct: 361 VLSSPRVTAINNQKAVIKVGDDEYFVTDVSSESTVTAATASTTPNIELTPFFSGIALDVT 420 Query: 320 PTVLSPGRIGLR-----IQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVL 370 P + + G + L I+TE E V+ +N + + +R++DT + SG +V+ Sbjct: 421 PQIDAQGGVLLHVHPSVIETEEQEKVVTLNEEQFVLPLAASNIRESDTIIHARSGEIVVI 480 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 GL++ I + + PLL IP+LG LF+N + + + E+ I P +V R Sbjct: 481 GGLMQSIISETESKTPLLGDIPLLGNLFKNRQESEIKKELVILLRPTVVSADTWR 535 >gi|297171846|gb|ADI22835.1| type II secretory pathway, component PulD [uncultured nuHF2 cluster bacterium HF0500_31B05] Length = 815 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 124/279 (44%), Gaps = 27/279 (9%) Query: 182 KKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 +K++N+L+ + Q+ ++ + EV + L+ IG + +TGS + SF G Sbjct: 262 EKLINVLHTQIDVPAQQIFIEALVIEVNTNRLRDIGVE--LTGSKNHVQGSFERSEGNPL 319 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + FS + D S + L AL L+ P++ ++ + A G Q Sbjct: 320 TTLL--FSRESFTDFLSLKGKLEALVEIGDAEILSSPSVLVLNDRQARVQVGRQIPIVRS 377 Query: 299 SSSTGATSVTTHDY---GVVLHFTPTV-LSPGRIGLRIQTEVS----------EPVIGVN 344 ++ T T+V +Y G+VL+ P + L ++ ++I+T +S E + + Sbjct: 378 TTPTAGTTVKGIEYFPIGIVLNLRPRINLDQSQVTIQIETIISSISTESATKLEDGVSED 437 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P R +T V + G ++ GLL + + K G+P LS +P LG LF R Sbjct: 438 ISFAPIVDNRLVETYVRVADGTPFIIGGLLSTERLESKVGVPFLSAVPFLGHLFSRKRVE 497 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 + E+ + TP +V P+ R+ S Y + D+ F Sbjct: 498 NTQREVIVVITPHIV-PLETRNFS-----YLIPKDSDLF 530 >gi|298485082|ref|ZP_07003178.1| Type IV pilus biogenesis protein PilQ [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160334|gb|EFI01359.1| Type IV pilus biogenesis protein PilQ [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 718 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 32/248 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238 QV ++ I E D KQ+G + + ++SG K ++ D G F Sbjct: 465 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPF 524 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 525 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 584 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP ++GV Sbjct: 585 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGV----- 638 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 639 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 698 Query: 409 EIFIAATP 416 E+ + TP Sbjct: 699 ELLVFLTP 706 >gi|289625073|ref|ZP_06458027.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330865718|gb|EGH00427.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 701 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 32/248 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238 QV ++ I E D KQ+G + + ++SG K ++ D G F Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPF 507 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 508 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP ++GV Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGV----- 621 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681 Query: 409 EIFIAATP 416 E+ + TP Sbjct: 682 ELLVFLTP 689 >gi|283851919|ref|ZP_06369195.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] gi|283572643|gb|EFC20627.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] Length = 542 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 23/248 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADFGGKFVSEGGDFSVKGVLDR 253 QV++ + EV D ++G + SS + FA D K + E G S L + Sbjct: 267 QVSISAMLVEVILDESSKMGLDWKLRAWSSNKAYNEFAQDTLAKTL-ETGSQSASANLAK 325 Query: 254 FS-----------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---- 292 +S ++H + T + L+ P L Q AS + G + Sbjct: 326 YSDAGTKAAMFFNIFPGGYLSMLVHMISSDTNAKILSSPHLLVADNQEASISLGREIPIL 385 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 Y+T +++ + + +G+ L TPT+ G + L++ ++S D Sbjct: 386 KEYRTDTNNDPIKTYSQRTFGLELKMTPTIADNGDVTLKVSQKLSNLDEQDTTNDTYKAS 445 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R ADTTV + T+V+ GL ++ G P KIP+LG LF ++++ E+ + Sbjct: 446 ERTADTTVVVHDKQTLVIGGLTMQTDEKEDSGTPTARKIPVLGYLFGTKSTSKQKRELLL 505 Query: 413 AATPFLVK 420 TP +V+ Sbjct: 506 FITPTVVR 513 >gi|83859862|ref|ZP_00953382.1| General (type II) secretion pathway (GSP) D protein [Oceanicaulis alexandrii HTCC2633] gi|83852221|gb|EAP90075.1| General (type II) secretion pathway (GSP) D protein [Oceanicaulis alexandrii HTCC2633] Length = 622 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 28/181 (15%) Query: 260 LHALERATA--IRTLAEPTLTAISGQSASFTSG-------GQHLYKTVSSSTGAT----S 306 + A R+T I L+ P + A SG+SA G Q T S G+T S Sbjct: 407 IEAAARSTNSNINVLSTPRIVARSGESAEVQVGTDVPIITSQRAANTQDS--GSTDILQS 464 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-------RKADTT 359 V+ GV+L P V S RI L I EVS +A D P+ + R+ ++ Sbjct: 465 VSYRSTGVLLTVEPRVYSNNRIDLTIMQEVS------SADDNPNQAIASPIISNRRMTSS 518 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T VL GL+ + + + G+PL+ IP+LG +F+ F+ ++ + + TP+++ Sbjct: 519 ITLQDGQTAVLGGLMSETVNRGSTGVPLVQDIPVLGNIFKTETFSNDQRVLLVLVTPYIL 578 Query: 420 K 420 Sbjct: 579 N 579 >gi|289676481|ref|ZP_06497371.1| type II and III secretion system protein:NolW-like:NolW-like [Pseudomonas syringae pv. syringae FF5] Length = 701 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 32/248 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238 QV ++ I E D KQ+G + + ++SG K ++ D G F Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAGNTSGNLTPNVPF 507 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 508 VDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681 Query: 409 EIFIAATP 416 E+ + TP Sbjct: 682 ELLVFLTP 689 >gi|289648291|ref|ZP_06479634.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. aesculi str. 2250] Length = 701 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 32/248 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238 QV ++ I E D KQ+G + + ++SG K ++ D G F Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPF 507 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 508 VDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP ++GV Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGV----- 621 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681 Query: 409 EIFIAATP 416 E+ + TP Sbjct: 682 ELLVFLTP 689 >gi|254246658|ref|ZP_04939979.1| GspD [Burkholderia cenocepacia PC184] gi|124871434|gb|EAY63150.1| GspD [Burkholderia cenocepacia PC184] Length = 775 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 12/153 (7%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336 + GQ+ +G Y ++S T + + T+D G+ LH P + G + L++ TE Sbjct: 532 VVGQNVPIATGS---YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTED 588 Query: 337 SEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S V G NA P++ R +T+ +G IVL GL++D+ Q +PLL IP +G Sbjct: 589 SAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 648 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 LFR+ R +T + + ++PV + D S Sbjct: 649 QLFRSESKVRAKTNLMV-----FLRPVIISDRS 676 >gi|330977147|gb|EGH77105.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 701 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 32/248 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGK--------------F 238 QV ++ I E D KQ+G + + ++SG K ++ D G F Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAGNTSGNLTPNVPF 507 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 508 VDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681 Query: 409 EIFIAATP 416 E+ + TP Sbjct: 682 ELLVFLTP 689 >gi|170731436|ref|YP_001763383.1| general secretion pathway protein D [Burkholderia cenocepacia MC0-3] gi|169814678|gb|ACA89261.1| general secretion pathway protein D [Burkholderia cenocepacia MC0-3] Length = 780 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 12/153 (7%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336 + GQ+ +G Y ++S T + + T+D G+ LH P + G + L++ TE Sbjct: 532 VVGQNVPIATGS---YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTED 588 Query: 337 SEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S V G NA P++ R +T+ +G IVL GL++D+ Q +PLL IP +G Sbjct: 589 SAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 648 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 LFR+ R +T + + ++PV + D S Sbjct: 649 QLFRSESKVRAKTNLMV-----FLRPVIISDRS 676 >gi|301382657|ref|ZP_07231075.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato Max13] gi|302060641|ref|ZP_07252182.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato K40] gi|302130950|ref|ZP_07256940.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331016027|gb|EGH96083.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 701 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 32/256 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGK--------------F 238 QV ++ I E D KQ+G + S S +G ++ D G F Sbjct: 448 QVMIEARIVEANVDYNKQLGVRWGGSTNTSRNGKWTTYGLDDNGDEGGNTNANLTSNIPF 507 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 508 VDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 567 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 568 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 621 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 622 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 681 Query: 409 EIFIAATPFLVKPVAM 424 E+ + TP ++ A+ Sbjct: 682 ELLVFLTPRIMNNQAI 697 >gi|122091112|emb|CAL13995.1| putative membrane transport protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 371 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G Y GAT++ + + + TP +L G+I L Sbjct: 220 IASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFKEAVLGMEVTPKILRNGKITLN 279 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P + + GD + + K + T + + G TIVL G+ + Q +PLL+ Sbjct: 280 LKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETIVLGGIFQQKSSQGVNKVPLLA 339 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG LF+ + E+ I TP L+ Sbjct: 340 DIPWLGGLFKQDTQQQSRRELVIFITPKLI 369 >gi|303248827|ref|ZP_07335077.1| general secretion pathway protein D [Desulfovibrio fructosovorans JJ] gi|302489768|gb|EFL49699.1| general secretion pathway protein D [Desulfovibrio fructosovorans JJ] Length = 695 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 9/161 (5%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSP 325 L+ P L + + AS T Y T + S T+ D G L TP + Sbjct: 463 LSTPQLMTLDNEEASITVAENRPYLTATDSGQNKQDRTYQQFDYKDVGTKLKITPHIGQS 522 Query: 326 GRIGLRIQTEVS--EPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 I L+I EVS + ++ G + P+ R R TTV++ G TIV++GL+ Q Sbjct: 523 DSIRLKILQEVSRVDKAETLDTGSLQPTTRKRATQTTVQVKDGQTIVISGLMGVSDQDSF 582 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +P +S IP+LG LF++ RE+T +++ TP +V+ A Sbjct: 583 SNVPGISDIPVLGWLFKHKSKTREKTNLYVFITPRIVQSPA 623 >gi|294627648|ref|ZP_06706230.1| type II secretory pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598000|gb|EFF42155.1| type II secretory pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 668 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 8/175 (4%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F ++ A++ T L+ P++ + + A G Q + T GA ++ Sbjct: 431 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNLFRTIQR 489 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTI 368 D GV L P + + G I L I+ EVS V+A + R+ +T V + +G + Sbjct: 490 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIV 549 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 L GLL + +Q E +PLL +P LGALFR+ NR++T + + P +++ A Sbjct: 550 ALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 604 >gi|28872241|ref|NP_794860.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato str. DC3000] gi|213969446|ref|ZP_03397583.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato T1] gi|28855495|gb|AAO58555.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato str. DC3000] gi|213925817|gb|EEB59375.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato T1] Length = 718 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 32/256 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGK--------------F 238 QV ++ I E D KQ+G + S S +G ++ D G F Sbjct: 465 QVMIEARIVEANVDYNKQLGVRWGGSTNTSRNGKWTTYGLDDNGDEGGNTNANLTSNIPF 524 Query: 239 VSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V G + G V + + L A+E+ +++P + ++A G + Sbjct: 525 VDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI 584 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDM 348 Y+ SSS+GAT+V+ + + L TP + RI + ++ EP V+GV Sbjct: 585 PYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGV----- 638 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR + ++ Sbjct: 639 PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKS 698 Query: 409 EIFIAATPFLVKPVAM 424 E+ + TP ++ A+ Sbjct: 699 ELLVFLTPRIMNNQAI 714 >gi|116328309|ref|YP_798029.1| Type II secretory pathway component, protein D [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331035|ref|YP_800753.1| Type II secretory pathway component, protein D [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121053|gb|ABJ79096.1| Type II secretory pathway component, protein D [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124724|gb|ABJ75995.1| Type II secretory pathway component, protein D [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 598 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 19/256 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ +L+ + QV L+V I E+ L G G + G S + S Sbjct: 302 RKIIKVLD-SARKQVLLEVLIVELTSSDLNDFGIDWRYKGEAFGQFNSGLSKEANIINSN 360 Query: 242 GGDFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G L FS +L A + L+ P + + Q A + G Sbjct: 361 GQINPNVNTLSGFSLGFLKAGSEQIIGILSANQGNENFNVLSAPQVLTVDNQEAEISVGQ 420 Query: 292 QHLYKTVSSSTG-----ATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +T S + G A +V ++Y G+ L FTP V RI L + E+ Sbjct: 421 DVPVRTQSRNAGTGGTNAVTVDNYEYRPTGIKLKFTPHVNKNNRITLELFQEIKNIAEIA 480 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 AG P++ R+ T++ + + +IV+ GL+ +D Q+ IP L IP LG LF+ + Sbjct: 481 LAGGNPTFNRREIKTSISIENTQSIVIGGLISNDKQKRIIKIPFLGDIPYLGHLFKRTTE 540 Query: 404 NREETEIFIAATPFLV 419 ++T + + TP ++ Sbjct: 541 KIKKTNLMVFITPHIL 556 >gi|294666182|ref|ZP_06731437.1| type II secretory pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604047|gb|EFF47443.1| type II secretory pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 668 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 8/175 (4%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F ++ A++ T L+ P++ + + A G Q + T GA ++ Sbjct: 431 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNPFRTIQR 489 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTI 368 D GV L P + + G I L I+ EVS V+A + R+ +T V + +G + Sbjct: 490 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIV 549 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 L GLL + +Q E +PLL +P LGALFR+ NR++T + + P +++ A Sbjct: 550 ALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 604 >gi|163857177|ref|YP_001631475.1| general secretion pathway protein D [Bordetella petrii DSM 12804] gi|163260905|emb|CAP43207.1| general secretion pathway protein D [Bordetella petrii] Length = 862 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 35/258 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--AADFGGKFVSEGGDFS------ 246 QV ++ I EV ++ + G Q +TG+ S F + GG + G + Sbjct: 419 QVLVESLIVEVSQEKAAEFGIQW-MTGAGSLDGSGFIGGTNLGGSGIGSAGTGATTLDAL 477 Query: 247 --------VKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG--- 290 VKG +D + + AL+ + L+ P L + + AS G Sbjct: 478 GRGLTLGLVKGTVDVLGNQVINLNVLARALQNSGEANILSTPNLLTLDNEPASILVGKTV 537 Query: 291 ----GQHLYK-TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIG 342 GQ++ + S+ ++ D G+ L+ P + G + L I EVS E Sbjct: 538 PFVTGQYVTSGSAGSNNPFQTIEREDIGLKLNIRPQISEGGAVKLDIYQEVSSIDEASSS 597 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + + R DT+V + G IVL GLL+D + +P LS IP+LGALFR + Sbjct: 598 ETTGLVTNKRA--IDTSVLVDDGQIIVLGGLLEDRVTSTTSAVPGLSSIPLLGALFRYDK 655 Query: 403 FNREETEIFIAATPFLVK 420 R ++ + + PF+V+ Sbjct: 656 RQRTKSNLMVFLRPFVVR 673 >gi|325294579|ref|YP_004281093.1| type II and III secretion system protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065027|gb|ADY73034.1| type II and III secretion system protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 642 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 59/273 (21%), Positives = 117/273 (42%), Gaps = 34/273 (12%) Query: 182 KKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGG 236 +++MNLL + QV +K I ++ K GF I G + + PS +G Sbjct: 370 QEIMNLLKKLDKPMKQVIVKAKIVQISTSAAKDFGFGWLIGGYNHMGTPPSSYITGSYGF 429 Query: 237 ---------KFVSE-----------GGDFSVKGVLDR---FSFETVLHALERATAIRTLA 273 F++E G G+L++ E L AL+ + ++ Sbjct: 430 GLGSNTGVLPFINETSYSSLYNIPVGESTLALGILNKSQNLKVEIALKALQLDGNAKIVS 489 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGL 330 P + ++ Q A+ G + Y+ + ++G + T + ++L P + + I L Sbjct: 490 SPEVLTLNNQEATIEQGIEIPYRESTVASGGATTYTVSFKRASLILKVKPHITNNNEIIL 549 Query: 331 RIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 ++ P + + + P+ R + +++ +G TIV+ G+ + + + K G+P+ Sbjct: 550 DLEVRKDSPNYEHVALTGSNEPAIDTRNVKSRIKVANGNTIVIGGIYEKEKSKSKTGVPV 609 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +S IP+LG LF+ E + I TP +V+ Sbjct: 610 ISNIPLLGWLFKQESVKFTEKNLLIFITPKVVE 642 >gi|224171310|ref|XP_002339480.1| predicted protein [Populus trichocarpa] gi|222875215|gb|EEF12346.1| predicted protein [Populus trichocarpa] Length = 263 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 4/169 (2%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD + L ALE + + ++ P + A+ G++A G + YKT S + T Sbjct: 98 LDTIVLDLQLSALESSGGGKVISSPKVMALDGETARIGQGTEIPYKTTSDNGTTTEFKKA 157 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + + L TP + I L I S P GV D + ++A+T + L +G T V+ Sbjct: 158 E--LALEVTPLINPDNTILLEILATNSSP--GVAYTDGVAINTKEAETKLLLKNGETTVI 213 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ ++ Q G P L +P +G LF+ + + TE+ I TP +V Sbjct: 214 GGIYTENEQNSDSGTPYLKDLPFIGNLFKYKTSSNDRTELLIFLTPHIV 262 >gi|24375599|ref|NP_719642.1| MSHA biogenesis protein MshL [Shewanella oneidensis MR-1] gi|24350494|gb|AAN57086.1|AE015842_6 MSHA biogenesis protein MshL [Shewanella oneidensis MR-1] Length = 560 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 28/219 (12%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 T + +G S + GG S+KG F T++ L+ + L+ P +TA Sbjct: 327 TSAGTGLSDKITSSLGGV-----TSLSIKGS----DFNTMISLLDTQGDVDVLSSPRVTA 377 Query: 280 ISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIG 329 + Q A G + T SST G T VTT G+ L TP + G + Sbjct: 378 SNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDKDGNVL 437 Query: 330 LRIQ---TEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L + +V E + + + +R++DT + SG +V+ GL+K + + Sbjct: 438 LHVHPSVIDVKEQTKDIKVSNESLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENIE 497 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL IP +G LF+N +++TE+ I P +V Sbjct: 498 VVSQVPLLGDIPFVGELFKNRSKQKKKTELIIMLKPTVV 536 >gi|325925811|ref|ZP_08187183.1| Type II secretory pathway protein D [Xanthomonas perforans 91-118] gi|325543797|gb|EGD15208.1| Type II secretory pathway protein D [Xanthomonas perforans 91-118] Length = 692 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F ++ A++ T L+ P++ + + A G Q + T GA ++ Sbjct: 453 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNPFRTIQR 511 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTI 368 D GV L P + + G I L I+ EVS V+A + R+ +T V + +G + Sbjct: 512 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIV 571 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GLL + +Q E +PLL +P LGALFR+ NR++T + + ++P +RD Sbjct: 572 ALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMV-----FIRPTVIRD 624 >gi|229576793|ref|YP_001008121.2| putative outer membrane porin HofQ [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 376 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G Y GAT++ + + + TP +L G+I L Sbjct: 225 IASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFKEAVLGMEVTPKILRNGKITLN 284 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P + + GD + + K + T + + G TIVL G+ + Q +PLL+ Sbjct: 285 LKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETIVLGGIFQQKSSQGVNKVPLLA 344 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG LF+ + E+ I TP L+ Sbjct: 345 DIPWLGGLFKQDTQQQSRRELVIFITPKLI 374 >gi|167717371|ref|ZP_02400607.1| general secretion pathway protein D [Burkholderia pseudomallei DM98] Length = 730 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+L FS + + L + TL + GQ+ +G Y ++S + Sbjct: 483 GLLQYFSGVSDANVLSTPNLV-TLDNEEAKIVVGQNVPIPTGS---YSNLTSGNTNNAFN 538 Query: 309 THD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPS 364 T+D G+ LH P + G + L++ TE S V +N P++ R +TV + Sbjct: 539 TYDRRDVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTINNQSGPTFNKRSIQSTVLADN 598 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + ++PV + Sbjct: 599 GEIIVLGGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVII 653 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 D + A+A NR + I G Sbjct: 654 ND----------RETAQAVTSNRYDYIQG 672 >gi|9625382|ref|NP_039614.1| gene IV product [Enterobacteria phage I2-2] gi|138048|sp|P15420|G4P_BPI22 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|14922|emb|CAA32520.1| gene IV product [Enterobacteria phage I2-2] Length = 428 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 13/195 (6%) Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G + GG F G+ + L A++ + + ++ P + SGQS + S GQ+ Sbjct: 237 LGTALSTAGGSF---GIFNGNILALSLQAVQSDSNSKVISTPRILTQSGQSG-YISVGQN 292 Query: 294 LYKTVSSSTG-ATSVTT-------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 + TG A SV D GV L TP V+ G++ L I T+ A Sbjct: 293 VPFVTGKVTGEAASVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLSNQAIA 352 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 D+ + + R+ TTV++ G T++L GL+ + +P +SKIP++G LFR+ ++ Sbjct: 353 SDIITNQ-RQIQTTVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIPLIGWLFRSHSDSK 411 Query: 406 EETEIFIAATPFLVK 420 ++ +F+ T +++ Sbjct: 412 DDRTMFVLLTAHVIR 426 >gi|116620187|ref|YP_822343.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223349|gb|ABJ82058.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 872 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 77/181 (42%), Gaps = 22/181 (12%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----------ATSVTTHDYGVVLHFT 319 + L P L A+ A+ G + T S G T T D GV + T Sbjct: 448 KVLQSPQLRAVDNVKATLKIGDRQPTATGSFQPGIGGVGINPLVNTQFTYIDVGVNVELT 507 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P V G + + I ++S VN G D P RK + + G +LAGL K Sbjct: 508 PRVHDNGDVSMHIDLDISSVTGHVNLGGIDQPIIGQRKVSHDIRMHEGSVQLLAGLTKWQ 567 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + K GIP L+ +PI+G LF +RE E+ IA P +V+ RPD Y+ E Sbjct: 568 DTKTKTGIPGLANVPIIGRLFSGESVDRERQELMIALIPHIVR--------RPD--YTAE 617 Query: 438 D 438 + Sbjct: 618 N 618 >gi|224823626|ref|ZP_03696735.1| type IV pilus secretin PilQ [Lutiella nitroferrum 2002] gi|224604081|gb|EEG10255.1| type IV pilus secretin PilQ [Lutiella nitroferrum 2002] Length = 691 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 1/160 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + + +A P + A+ G + Y+ +SS GATS + + L Sbjct: 525 LQALQTESQGKIVASPRVLTSDRTEATIEQGQEIPYQEATSS-GATSTSFKKAVLSLKVK 583 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + I + IQ + +PS + +K +T V + +GGT+V+ G+ D Sbjct: 584 PQITPDSTILMDIQINNDTADFANLSNGVPSLKTKKVNTQVLVENGGTVVIGGIYTQDEN 643 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL IP+LGALFR+ TE+ + TP +V Sbjct: 644 EGLSKVPLLGDIPLLGALFRSKTKKDNRTELLVFLTPRVV 683 >gi|56476093|ref|YP_157682.1| general (Type II) secretion pathway (GSP) D protein [Aromatoleum aromaticum EbN1] gi|56312136|emb|CAI06781.1| General (Type II) secretion pathway (GSP) D protein [Aromatoleum aromaticum EbN1] Length = 771 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 132/301 (43%), Gaps = 41/301 (13%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 I+D+ +AV L+E L+ L++A E +V L+V + EV R L+++ Sbjct: 308 IKDTPQAVRLAERLLAS-----------------LDVA-EPEVMLEVEVLEVARSKLREL 349 Query: 214 GFQHS-------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF-ETVLHALER 265 G + AA + V+ G GV+ R + + + Sbjct: 350 GLDFPDEIGYGLLRSQQQITQTQTAAGIVSEVVTLPGSEIAPGVVPRAQWGDLTGYVTNP 409 Query: 266 ATAIRT---------LAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYG 313 A +R LA P + + + A G + T +S+ + SV+ D G Sbjct: 410 ALTLRLRAEDGDTNLLANPRIRVKNREKAKIHIGEKLPVFTTTSTANVGVSASVSYLDVG 469 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRV--RKADTTVELPSGGTIVL 370 + L P V + +++ EVS V V D +Y+V R A T + L +G T VL Sbjct: 470 LKLDVEPAVTLDDEVAIKVALEVSNIVREVPGPSDSLAYQVGTRSATTVLRLRNGETQVL 529 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGL+ D+ ++ + +P L +P++G LF + R N +TEI + TP +V+ + L+R Sbjct: 530 AGLISDEERRSAQRLPGLGDLPLIGRLFSSERNNASKTEIVLLITPRIVRNIVAPSLARA 589 Query: 431 D 431 D Sbjct: 590 D 590 >gi|254184073|ref|ZP_04890664.1| general secretion pathway protein D [Burkholderia pseudomallei 1655] gi|184214605|gb|EDU11648.1| general secretion pathway protein D [Burkholderia pseudomallei 1655] Length = 751 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+L FS + + L + TL + GQ+ +G Y ++S + Sbjct: 490 GLLQYFSGVSDANVLSTPNLV-TLDNEEAKIVVGQNVPIPTGS---YSNLTSGNTNNAFN 545 Query: 309 THD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPS 364 T+D G+ LH P + G + L++ TE S V +N P++ R +TV + Sbjct: 546 TYDRRDVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTINNQSGPTFNKRSIQSTVLADN 605 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + ++PV + Sbjct: 606 GEIIVLGGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVII 660 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 D + A+A NR + I G Sbjct: 661 ND----------RETAQAVTSNRYDYIQG 679 >gi|255021644|ref|ZP_05293686.1| Type IV pilus biogenesis protein PilQ [Acidithiobacillus caldus ATCC 51756] gi|254968904|gb|EET26424.1| Type IV pilus biogenesis protein PilQ [Acidithiobacillus caldus ATCC 51756] Length = 772 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 1/172 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + + ++ P + + A G + Y+ +SS GATSV+ + L T Sbjct: 597 LQALQASNQAKIISSPKVLTQDNEKAVIEQGQEIPYQQATSS-GATSVSFKKAELSLDVT 655 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G++ L + + ++P ++ T + + +G T+V+ G+ D Sbjct: 656 PHIAPNGKVTLDVDAKNNQPNYAQTTPSGVPINTQEVKTKLLVNNGQTVVIGGIYTDSKS 715 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 G+P+L IP+LG LF++ +N ++E+ + TP +V + DL+ D Sbjct: 716 HYDTGVPVLKDIPLLGWLFKSKTYNDSQSELLVFLTPKVVGGQSEDDLAGED 767 >gi|146282151|ref|YP_001172304.1| general secretion pathway protein D [Pseudomonas stutzeri A1501] gi|145570356|gb|ABP79462.1| general secretion pathway protein D [Pseudomonas stutzeri A1501] Length = 644 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 119/260 (45%), Gaps = 38/260 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGG--------- 243 QV ++ I EV DI +G Q +I GS+ G + +FG +S G Sbjct: 345 QVMVEAAIVEVSGDITDALGVQWAIDARGSTGG---AGGVNFGNTGISVGSVLNAINENE 401 Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 D ++ GV R SF ++ AL + L+ P+L + Q A G ++T Sbjct: 402 IPNNLPDGAIIGVGTR-SFGALITALSSNSKSNLLSTPSLLTLDNQEAEILVGQNVPFQT 460 Query: 298 VSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346 S +T A T++ D GV L TP + + L+I+ E+S + A Sbjct: 461 GSYTTDAAGANNPFTTIERQDIGVTLKVTPHINEGATLRLQIEQEISSIAPSASLTAQAV 520 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+ + + R +T+ G IVL GL++DD+ + +PLL IP+LG LFR++ + Sbjct: 521 DLVTNK-RAIKSTILAEDGQVIVLGGLIQDDVTRTNSKVPLLGDIPLLGGLFRST----Q 575 Query: 407 ETEIFIAATPFLVKPVAMRD 426 ET I FL +P +RD Sbjct: 576 ETHIKRNLMVFL-RPTVIRD 594 >gi|320352793|ref|YP_004194132.1| general secretion pathway protein D [Desulfobulbus propionicus DSM 2032] gi|320121295|gb|ADW16841.1| general secretion pathway protein D [Desulfobulbus propionicus DSM 2032] Length = 752 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 6/174 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGV 314 V++A + + +A P + + AS G Y T ++T A T+ D Sbjct: 451 VVNAYKSDDDVNVIATPQILTTDNKKASIKVGENVPYITSKNTTDAEQDYTNYEYKDVAT 510 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L TP V + L I EV + + A D PS R A+TTV + + T+V+ G++ Sbjct: 511 SLTITPQVNQAEVVRLEIGVEVIK-LKNTEATDTPSTFTRTAETTVVVHNEQTVVIGGMI 569 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDL 427 D + +P+L IP+LG +F++ ++E+T ++I TP +V+ P + DL Sbjct: 570 GQDTTSGEYKVPVLGDIPVLGWMFKSRSNSQEKTNLYIFITPHIVENPAEIADL 623 >gi|253701597|ref|YP_003022786.1| type II and III secretion system protein [Geobacter sp. M21] gi|251776447|gb|ACT19028.1| type II and III secretion system protein [Geobacter sp. M21] Length = 870 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 19/186 (10%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPG 326 TL+ P + + + A F G + T SS +G + +V D GV ++ PT+ Sbjct: 429 ETLSNPKIRVKNREKAKFNVGTRVPITTTSSPSGGGVSVNVQYVDVGVKVNAEPTIQLNN 488 Query: 327 RIGLRIQTEVS----EPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + +++ EVS E IG + A + + R DT + L G T ++ GL++ Sbjct: 489 EVAIKLGLEVSSILNEKTIGTDQATTVVTIGTRNLDTVLSLKDGETSIIGGLIQKTQTDS 548 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 K + LL IPI+G LF N+ +++TE+ +A TP +V+ V + D +D Sbjct: 549 KNKVFLLGDIPIIGPLFSNTSDKKDKTELLLAITPRIVRGVTVPD-----------NDVA 597 Query: 442 AFFFNR 447 AF+ R Sbjct: 598 AFWSGR 603 >gi|294139057|ref|YP_003555035.1| MSHA biogenesis protein MshL [Shewanella violacea DSS12] gi|293325526|dbj|BAJ00257.1| MSHA biogenesis protein MshL [Shewanella violacea DSS12] Length = 560 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 110/249 (44%), Gaps = 24/249 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252 QV ++ I EV Q G ++ G + F GG +S+ + GV Sbjct: 281 QVIIEAKILEVTLSDGYQQGINWQNVLGHVGDTNIEFGTSSGGNSLSDQITSVIGGVTSL 340 Query: 253 RFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATS 306 +FS F +++ L+ + L+ P +TA++ Q A G + T SST G T Sbjct: 341 KFSGTDFAAMINLLDTQGDVDVLSSPRVTALNNQKAVIKVGTDEYFVTDVSSTTVAGNTP 400 Query: 307 VTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV---SEPVIGVNAGD------MPS 350 +TT + G+ L TP + G + L I V E + D + Sbjct: 401 ITTPEVELTPFFSGIALDVTPQIDGEGNVLLHIHPSVISIKEQTKTIKISDSTLELPLAQ 460 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++DT + SG +V+ GL+K + +L +PLL IP+LG LF N + ++TE+ Sbjct: 461 SDIRESDTVIMARSGDVVVIGGLMKSENIELLSKVPLLGDIPLLGELFTNRSKSLKKTEL 520 Query: 411 FIAATPFLV 419 I P +V Sbjct: 521 VILLKPTVV 529 >gi|312114563|ref|YP_004012159.1| type II and III secretion system protein [Rhodomicrobium vannielii ATCC 17100] gi|311219692|gb|ADP71060.1| type II and III secretion system protein [Rhodomicrobium vannielii ATCC 17100] Length = 636 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 78/314 (24%), Positives = 136/314 (43%), Gaps = 41/314 (13%) Query: 136 IRVEMVSDTVVLHGMVRTIQ--DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 ++ M TV + + TIQ D++ +E++E ++ + R Sbjct: 298 LKASMDVKTVFANNDLGTIQIRDTRETLEVAERLIATNDRKPA----------------- 340 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 ++ L+V I E+ R +Q+G + + + P SF ++ G + V+ Sbjct: 341 -EIMLEVEILEIDRTKAEQLGLDYGSSITVQLPQVSFTD------LANGAKLATNSVI-- 391 Query: 254 FSFETV-LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSV--T 308 +F TV + L+ RTL+ P + + GQ A G + ++ V +TG T Sbjct: 392 -TFPTVTFNYLKTDVGARTLSNPRIRTVDGQPAKIHVGDRVPLQSSFVQDTTGQTRTLFE 450 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV--RKADTTVELPS 364 HD G+ L P G I + ++ EVS +G N G P+Y + R TT+ L Sbjct: 451 YHDIGIQLDVIPKYHLDGSIFVDLKIEVSS--LGSNLGTAAQPAYAIGSRNVHTTMILRE 508 Query: 365 GGTIVLAGLLKDDIQQLKEGIPL-LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 T +L GL+K++ Q G+P+ S + +L LF S +E+ + TP L++P + Sbjct: 509 NETALLGGLIKEEEQHNMNGLPVERSGVSVLDRLFSTSSDKVGRSELLLTITPRLIRPQS 568 Query: 424 MRDLSRPDDHYSVE 437 S D + E Sbjct: 569 FAQRSATDFYSGTE 582 >gi|325915066|ref|ZP_08177395.1| type II secretion system protein D [Xanthomonas vesicatoria ATCC 35937] gi|325538764|gb|EGD10431.1| type II secretion system protein D [Xanthomonas vesicatoria ATCC 35937] Length = 680 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 8/175 (4%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F ++ A++ T L+ P++ + + A G Q + T GA ++ Sbjct: 444 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNPFRTIQR 502 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTI 368 D GV L P + + G I L I+ EVS V+A + R+ +T V + +G + Sbjct: 503 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIV 562 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 L GLL + +Q E +PLL +P LGALFR+ NR++T + + P +++ A Sbjct: 563 ALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 617 >gi|327480391|gb|AEA83701.1| general secretion pathway protein D [Pseudomonas stutzeri DSM 4166] Length = 644 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 119/260 (45%), Gaps = 38/260 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGG--------- 243 QV ++ I EV DI +G Q +I GS+ G + +FG +S G Sbjct: 345 QVMVEAAIVEVSGDITDALGVQWAIDARGSTGG---AGGVNFGNTGISVGSVLNAINKNE 401 Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 D ++ GV R SF ++ AL + L+ P+L + Q A G ++T Sbjct: 402 IPNNLPDGAIIGVGTR-SFGALITALSSNSKSNLLSTPSLLTLDNQEAEILVGQNVPFQT 460 Query: 298 VSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346 S +T A T++ D GV L TP + + L+I+ E+S + A Sbjct: 461 GSYTTDAAGANNPFTTIERQDIGVTLKVTPHINEGATLRLQIEQEISSIAPSASLTAQAV 520 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+ + + R +T+ G IVL GL++DD+ + +PLL IP+LG LFR++ + Sbjct: 521 DLVTNK-RAIKSTILAEDGQVIVLGGLIQDDVTRTNSKVPLLGDIPLLGGLFRST----Q 575 Query: 407 ETEIFIAATPFLVKPVAMRD 426 ET I FL +P +RD Sbjct: 576 ETHIKRNLMVFL-RPTVIRD 594 >gi|237798101|ref|ZP_04586562.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020953|gb|EGI01010.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 701 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 14/212 (6%) Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L G + TG++ GP+ F D G + G + V + + L A+E+ Sbjct: 487 LDNNGDEAGNTGNNLGPNIPFV-DLGAANATTG--IGLGFVTNNTLLDLELSAMEKTGNG 543 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI Sbjct: 544 EIVSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRII 602 Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + ++ EP V+GV P + + + V + G TIV+ G+ + ++ + Sbjct: 603 MEVKVTKDEPDYLNAVLGV-----PPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDK 657 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +P L +P LG LFR + ++E+ + TP Sbjct: 658 VPFLGDVPYLGRLFRRDVVSESKSELLVFLTP 689 >gi|294055468|ref|YP_003549126.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] gi|293614801|gb|ADE54956.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] Length = 906 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 37/199 (18%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGA------T 305 + A+ R + ++ P +T +SG+ A+ T + Y TVSS+ T Sbjct: 668 IRAIARQSGSDLMSAPKVTVLSGKRANITVAQELRYPESYGDIESTVSSNNNGGAAISIT 727 Query: 306 SVTTHDY-----GVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGD---- 347 + T D+ GV L TP V + I L ++ V+E P + + +G Sbjct: 728 AGTPEDFVVRNVGVELAVTPNVENDDTISLILEPRVTEFEGFVEYGGPSVALASGTTVTV 787 Query: 348 -----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 P + R+ T V + G TIV+ GL +D+++ +++ +P+L IP LG LFR+ Sbjct: 788 PAGFYQPVFSTREISTEVTIFDGATIVMGGLTRDEVKYIEDKVPVLGDIPALGRLFRSEG 847 Query: 403 FNREETEIFIAATPFLVKP 421 R++ + I T +V P Sbjct: 848 ETRQKRNLLIFVTANMVSP 866 >gi|262039342|ref|ZP_06012655.1| general secretion pathway protein D [Leptotrichia goodfellowii F0264] gi|261746604|gb|EEY34130.1| general secretion pathway protein D [Leptotrichia goodfellowii F0264] Length = 385 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 104/228 (45%), Gaps = 12/228 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-FAADFGGKFVSEGGDFSVKGVL 251 +DQ+ +K TI + ++ +++G +I ++ P+KS A F ++ G F+ G Sbjct: 151 KDQIIIKGTIIDTSSNLFEKLGVDWNINSNNPEPAKSNLVAKFLNGEITIGSIFASGGKF 210 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVT 308 F + L I+ A PTL + + + L KT ++T T Sbjct: 211 LGIDF----NLLRENGDIKIEAMPTLLIMEDEEGELKVTEEVLVGEKKTTKNNTDYTEPI 266 Query: 309 THDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPS 364 + G+V P + +I L+I TE+S + N + + + T + L + Sbjct: 267 FSEAGIVFKILPEIRKINGEKKILLKIDTEISNFKLTSNYSSGSGAKQKNQTKTIITLNN 326 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 GG+ + GL ++ ++ + +P S IPI+G LF+ R N+E +I+I Sbjct: 327 GGSTFIGGLKQNVTKETIKKVPFFSSIPIIGPLFKYKRNNKEVRDIYI 374 >gi|78046312|ref|YP_362487.1| type II secretory pathway protein D [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034742|emb|CAJ22387.1| type II secretory pathway protein D [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 689 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F ++ A++ T L+ P++ + + A G Q + T GA ++ Sbjct: 450 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNPFRTIQR 508 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTI 368 D GV L P + + G I L I+ EVS V+A + R+ +T V + +G + Sbjct: 509 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIV 568 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GLL + +Q E +PLL +P LGALFR+ NR++T + + ++P +RD Sbjct: 569 ALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMV-----FIRPTIIRD 621 >gi|289679098|ref|ZP_06499988.1| general secretion pathway protein D [Pseudomonas syringae pv. syringae FF5] Length = 221 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHD 311 + + L ALE + L+ P+L ++ Q A G S +T T++++ + Sbjct: 18 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVE 77 Query: 312 Y---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 Y GV+L P + G + + IQ +VS N D P R T V SG Sbjct: 78 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNANNSDANGNPRISTRSVATQVAAQSG 137 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ Sbjct: 138 QTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI 191 >gi|15598301|ref|NP_251795.1| general secretion pathway protein D [Pseudomonas aeruginosa PAO1] gi|544439|sp|P35818|GSPD_PSEAE RecName: Full=General secretion pathway protein D; Flags: Precursor gi|9949215|gb|AAG06493.1|AE004734_11 general secretion pathway protein D [Pseudomonas aeruginosa PAO1] gi|431185|emb|CAA48582.1| XcpQ [Pseudomonas aeruginosa PAO1] Length = 658 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 115/254 (45%), Gaps = 29/254 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242 QV ++ I E+ DI +G Q +I G +K+ A+ G K Sbjct: 360 QVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSIGTLLQSLESNKAPESI 419 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D ++ G+ SF ++ AL T L+ P+L + Q A G ++T S +T Sbjct: 420 PDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 478 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYR 352 + T+V D GV L TP + + L I+ E+S + N D+ + + Sbjct: 479 NSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISALLPNAQQRNNTDLITSK 538 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +T+ +G IV+ GL++DD+ Q + +PLL IP+LG LFR+++ + + + Sbjct: 539 -RSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLLGRLFRSTKDTHTKRNLMV 597 Query: 413 AATPFLVKPVAMRD 426 ++P +RD Sbjct: 598 -----FLRPTVVRD 606 >gi|167584994|ref|ZP_02377382.1| general secretion pathway protein D [Burkholderia ubonensis Bu] Length = 777 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 29/219 (13%) Query: 245 FSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 F V+G+ L F+ + + L I TL + GQ+ +G Y ++S Sbjct: 483 FGVQGLGALLQYFAGSSDANVLSTPNLI-TLDNEEAKIVVGQNVPIPTGS---YSNLTSG 538 Query: 302 TGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDM-PSYRVR 354 TG + T+D G+ LH P + G + +++ TE V + + +A P++ R Sbjct: 539 TGGNAFNTYDRRDVGLTLHVKPQITDGGILKMQLYTEDSSVVQSTVSTSANSPGPTFNKR 598 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +TV +G IVL GL++D+ +PLL IP +G LFR+ +R++T + + Sbjct: 599 SIQSTVLADNGEIIVLGGLMQDNYNTSNSKVPLLGDIPWIGQLFRSESKSRQKTNLMV-- 656 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 ++PV + D + A+A NR + I G Sbjct: 657 ---FLRPVIIND----------RETAQAVTANRYDYIQG 682 >gi|332139923|ref|YP_004425661.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonas macleodii str. 'Deep ecotype'] gi|327549945|gb|AEA96663.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonas macleodii str. 'Deep ecotype'] Length = 547 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 117/261 (44%), Gaps = 24/261 (9%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---------HSITGSSSG------ 225 ++K +N L+I + QV ++ + V D+ +Q+G + + I+GS G Sbjct: 285 ARKTINALDIPVK-QVLIESRMVTVLDDVDEQLGVRWGFSDRQDDNGISGSIEGADTIAG 343 Query: 226 ---PSKSFAADFGGKFVSEGGD--FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 PS + S G F + ++D + L ALE +A P +T + Sbjct: 344 GVVPSIENRLNVNLPVSSAAGSIGFQIASLVDGTILDLELSALESENKGEIIASPRIT-V 402 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSE 338 + Q ++ G + ++S+GATSV + L TP + RI L + + Sbjct: 403 ANQHEAYIEQGTEIPYVQATSSGATSVEFKKAVLSLKVTPHITPDNRIILDLVVTQDTRG 462 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + + GD + ++ T V + +G TIVL G+ + +PL +P++GALF Sbjct: 463 ETVTTSTGDAVAIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGDLPLVGALF 522 Query: 399 RNSRFNREETEIFIAATPFLV 419 RNS +++ E+ I TP +V Sbjct: 523 RNSSQLQQKRELLIFVTPKIV 543 >gi|107102654|ref|ZP_01366572.1| hypothetical protein PaerPA_01003719 [Pseudomonas aeruginosa PACS2] Length = 658 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 115/254 (45%), Gaps = 29/254 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242 QV ++ I E+ DI +G Q +I G +K+ A+ G K Sbjct: 360 QVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSIGTLLQSLESNKAPESI 419 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D ++ G+ SF ++ AL T L+ P+L + Q A G ++T S +T Sbjct: 420 PDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 478 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYR 352 + T+V D GV L TP + + L I+ E+S + N D+ + + Sbjct: 479 NSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISALLPNAQQRNNTDLITSK 538 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +T+ +G IV+ GL++DD+ Q + +PLL IP+LG LFR+++ + + + Sbjct: 539 -RSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLLGRLFRSTKDTHTKRNLMV 597 Query: 413 AATPFLVKPVAMRD 426 ++P +RD Sbjct: 598 -----FLRPTVVRD 606 >gi|238752500|ref|ZP_04613975.1| General secretion pathway protein D [Yersinia rohdei ATCC 43380] gi|238709263|gb|EEQ01506.1| General secretion pathway protein D [Yersinia rohdei ATCC 43380] Length = 625 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 14/182 (7%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 +++ + AL + LA P++ + A F G Q + S+ T AT S++ Sbjct: 390 NWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 448 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366 GV+L P + + L I+ EVS +N ++ S + R + V + SG Sbjct: 449 QSVGVMLKVKPQINKGDSVLLEIRQEVSSIADNSDINTHNLGSVFNKRVVNNAVLVKSGE 508 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T+V+ GLL I + +P L IP++GALFR S+ E++ + + +KP +R+ Sbjct: 509 TVVVGGLLDKKINKTINKVPFLGDIPLIGALFRQSKERMEKSNLIL-----FIKPTILRE 563 Query: 427 LS 428 S Sbjct: 564 TS 565 >gi|90020990|ref|YP_526817.1| Type II secretory pathway component PulD-like protein [Saccharophagus degradans 2-40] gi|89950590|gb|ABD80605.1| type II and III secretion system protein [Saccharophagus degradans 2-40] Length = 546 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 116/254 (45%), Gaps = 29/254 (11%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 A + QV ++ TI EV Q G S+ + G +++ D + + F++ Sbjct: 278 ASQRQVLIEATIVEVTLSERYQAGIDWSVLQQNVADGVTRTATQDVLDVTLQDPV-FTIT 336 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---------- 298 V S + AL+ + ++ P + ++ Q+A +Y TV Sbjct: 337 HVGKNLS--ATVKALDTFGDVSVMSSPKVMTLNNQTALLKVVDNLVYFTVDVNIETNESG 394 Query: 299 -SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------------A 345 S++T T V T G V+ TP + G + L I+ +S VIG+ Sbjct: 395 PSTTTFETEVNTVPIGFVMSVTPFINEFGYVTLNIRPTISR-VIGLKRDPNPALAQVNVV 453 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 ++P +VR+ ++ +++P G ++ GL++D+ + G+P LSKIP++G LF+ + Sbjct: 454 NEIPEIQVREVESVLKIPDGEVAIIGGLMQDEQDNTEHGVPGLSKIPLVGGLFKYTDDKV 513 Query: 406 EETEIFIAATPFLV 419 +++E+ I P +V Sbjct: 514 KKSELVIFIKPIVV 527 >gi|9626321|ref|NP_040655.1| hypothetical protein Pf3_5 [Pseudomonas phage Pf3] gi|138034|sp|P03668|VG430_BPPF3 RecName: Full=Putative assembly protein ORF430; Short=ORF430; Flags: Precursor gi|215375|gb|AAA88381.1| unknown protein [Pseudomonas phage Pf3] gi|215384|gb|AAA88390.1| unknown protein [Pseudomonas phage Pf3] Length = 430 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ + E D K++G S S A D V+ G + + Sbjct: 187 QVAIEANVVEASVDWSKRLGLNWGGALSLGNWSAVTAGDLS---VAAGSSIGFGFLSNTL 243 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 S + + A+E R ++ PTL + QSAS G + Y+ S+ GATSV + Sbjct: 244 SLDGLFTAMENEGNGRVVSRPTLLTLDRQSASVLRGTELPYQQ-SAGDGATSVAFKHAAL 302 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L P + I + + P +P + TT+ +P G T+VL G+ Sbjct: 303 SLEVKPVISPDNSIVIEVLVSRDSPNFSNAIDGVPPIDTNRLVTTIRVPHGQTVVLGGVY 362 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 QQ + +S+IP +G LF+ E+ E+ I TP Sbjct: 363 STINQQGSSRVSGISRIPGIGRLFKKKEHVTEQYELLIFLTP 404 >gi|218890695|ref|YP_002439559.1| general secretion pathway protein D [Pseudomonas aeruginosa LESB58] gi|254236075|ref|ZP_04929398.1| general secretion pathway protein D [Pseudomonas aeruginosa C3719] gi|254241802|ref|ZP_04935124.1| general secretion pathway protein D [Pseudomonas aeruginosa 2192] gi|126168006|gb|EAZ53517.1| general secretion pathway protein D [Pseudomonas aeruginosa C3719] gi|126195180|gb|EAZ59243.1| general secretion pathway protein D [Pseudomonas aeruginosa 2192] gi|218770918|emb|CAW26683.1| general secretion pathway protein D [Pseudomonas aeruginosa LESB58] Length = 658 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 115/254 (45%), Gaps = 29/254 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242 QV ++ I E+ DI +G Q +I G +K+ A+ G K Sbjct: 360 QVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSIGTLLQSLESNKAPESI 419 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D ++ G+ SF ++ AL T L+ P+L + Q A G ++T S +T Sbjct: 420 PDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 478 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYR 352 + T+V D GV L TP + + L I+ E+S + N D+ + + Sbjct: 479 NSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISALLPNAQQRNNTDLITSK 538 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +T+ +G IV+ GL++DD+ Q + +PLL IP+LG LFR+++ + + + Sbjct: 539 -RSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLLGRLFRSTKDTHTKRNLMV 597 Query: 413 AATPFLVKPVAMRD 426 ++P +RD Sbjct: 598 -----FLRPTVVRD 606 >gi|160901128|ref|YP_001566710.1| general secretion pathway protein D [Delftia acidovorans SPH-1] gi|160366712|gb|ABX38325.1| general secretion pathway protein D [Delftia acidovorans SPH-1] Length = 787 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 33/217 (15%) Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 +GF S+ G+++ F F+ GD ++ + + + E A R + Sbjct: 514 LGFTQSVNGNTT-------LGFLANFLQNSGDANILSTPNLMTLDN-----EEA---RII 558 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + ++G AS ++GG TV+ T+V D G++L P + G + L + Sbjct: 559 VGQNVPMVTGSYASNSTGG-----TVNP---FTTVERKDVGLMLRVRPQINENGTVKLAV 610 Query: 333 QTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 EVS E G + R +++ VE G IVL GL+ D+ Q ++ IPLL Sbjct: 611 FQEVSSVDESTRKDTNGLTTNKRSIESNVLVE--DGNIIVLGGLIDDNYSQAEDRIPLLG 668 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IP+LG LFRN+ R +T + + ++PV MRD Sbjct: 669 DIPVLGNLFRNTNRKRNKTNLMV-----FLRPVVMRD 700 >gi|83720377|ref|YP_440567.1| general secretion pathway protein D [Burkholderia thailandensis E264] gi|167621024|ref|ZP_02389655.1| general secretion pathway protein D [Burkholderia thailandensis Bt4] gi|83654202|gb|ABC38265.1| general secretion pathway protein D [Burkholderia thailandensis E264] Length = 744 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+L FS + + L + TL + GQ+ +G Y ++S + Sbjct: 483 GLLQYFSGVSDANVLSTPNLV-TLDNEEAKIVVGQNVPIPTGS---YSNLTSGNTNNAFN 538 Query: 309 THD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPS 364 T+D G+ LH P + G + L++ TE S V VN P++ R +TV + Sbjct: 539 TYDRRDVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADN 598 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + ++PV + Sbjct: 599 GEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVII 653 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 D + A+A NR + I G Sbjct: 654 TD----------RETAQAVTSNRYDYIQG 672 >gi|329848228|ref|ZP_08263256.1| general secretion pathway protein D [Asticcacaulis biprosthecum C19] gi|328843291|gb|EGF92860.1| general secretion pathway protein D [Asticcacaulis biprosthecum C19] Length = 617 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 36/272 (13%) Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 ++N +V L+ ++E+ R+ Q+ + SI + S+ D+ + ++ GD S Sbjct: 330 IINAPEATRVRLQEVLSEIDRE-PAQVFIEASIVEVTLTKDLSYGVDW--EAIASNGDLS 386 Query: 247 VKGVLDR----------FSFE-------TVLHALERATAIRTLAEPTLTAISGQSASFTS 289 V R FS + AL + +R ++ P + + A Sbjct: 387 VSHFSTRSTGFGQIAPGFSINYLGNDISAAVTALSSQSKVRIVSAPKVATVENMPAVLQV 446 Query: 290 GGQH--LYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 G Q + +T S SV D GV+L TP + RI L + EVS Sbjct: 447 GDQVPVVTQTAQSVVNGDAPVVNSVDYRDTGVMLKVTPRITGTNRILLEVSQEVSSVART 506 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +G D P+ RK D+++ +P G + L GL+ Q GIP L IP++G +F+ Sbjct: 507 QTSGIDSPTINQRKLDSSLIVPEGTVVALGGLISSSDSQSDSGIPGLKDIPLIGGVFKGQ 566 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 NR TE+ + L+K R L P D+ Sbjct: 567 SHNRNRTELIV-----LLK---ARILRSPSDY 590 >gi|330957039|gb|EGH57299.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. maculicola str. ES4326] Length = 692 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 23/239 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGGK------FVSEGGDFSV 247 QV ++ I E D K++G + ++SG S S GG FV G + Sbjct: 448 QVMIEARIVEANVDYDKELGVRWGGATNTSGSSNWSTGTAAGGSTANSSTFVDMGAANAT 507 Query: 248 KGV-----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G+ + + L A+E+ +++P + ++A G + Y+ SSS+ Sbjct: 508 SGIGLGFLTNNTMLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEVPYQE-SSSS 566 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKAD 357 GAT+V+ + + L TP + RI + ++ EP V+GV P + + + Sbjct: 567 GATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYVNAVLGV-----PPIKKNEVN 621 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 V + G TIV+ G+ + + + +P L +P LG LFR + ++E+ + TP Sbjct: 622 AKVLISDGETIVIGGVFSNTQSKSVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTP 680 >gi|192361327|ref|YP_001983786.1| general secretion pathway protein D [Cellvibrio japonicus Ueda107] gi|190687492|gb|ACE85170.1| General secretion pathway protein D [Cellvibrio japonicus Ueda107] Length = 681 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 14/177 (7%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGA---- 304 +R F VL ++ ++ L+ P+L A + G Q ++T S S TG Sbjct: 441 ERTDFLAVLKLMQSSSKTNILSTPSLLTTDNNQAVISVGRQVPFRTGSYSAVGTGGNSTI 500 Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T++ D G+ L TP + I L I+ EVS + V++ D R+ T + Sbjct: 501 GSPFTTINREDVGLKLEVTPHINEGDSIVLDIKQEVSS-LSDVSSEDGIITNKREIQTQI 559 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE--IFIAAT 415 G TIVL GL+ D++Q + +P+L IP+LG LFR+ ++ +T +FI AT Sbjct: 560 LSSDGETIVLGGLITDEVQTGERRVPVLGSIPVLGQLFRSQTSSKSKTNLLVFIRAT 616 >gi|307720788|ref|YP_003891928.1| pilus (MSHA type) biogenesis protein MshL [Sulfurimonas autotrophica DSM 16294] gi|306978881|gb|ADN08916.1| pilus (MSHA type) biogenesis protein MshL [Sulfurimonas autotrophica DSM 16294] Length = 542 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 29/230 (12%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----GATSVTTHD-- 311 V+ L+ + +++ P + ++ Q A T+G ++ YK +SS+ G + TT + Sbjct: 317 VIKFLKTQGDVNSISNPKVLTLNNQPALITAGTEYFYKIISSTNQQGTGGGVAATTQNDT 376 Query: 312 -----YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAG-DMP-SYRVRKADTTV 360 GV+L TP + I L+I +SE + N+G DMP R+ + V Sbjct: 377 VNSVFAGVLLTITPEISDDKTITLKINPSLSETTTDISQTSNSGRDMPPDLNRRQLSSVV 436 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV- 419 + G I+L GL+ +P+L IP+LG LF++ + E+ I P ++ Sbjct: 437 TVKDGNRIILGGLINSKNTSDTNQVPILGSIPVLGYLFKHEEIVKTVEELVIIIEPHIIH 496 Query: 420 ---KPVAMRDLSR---PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 +++ DL DD ++E +K ++N+ K+ E EG+ Sbjct: 497 KEKDSISLSDLGYEGLSDDLLTLESASKEKKEVKLNQ----KDDEEKEGK 542 >gi|167582884|ref|ZP_02375758.1| general secretion pathway protein D [Burkholderia thailandensis TXDOH] Length = 744 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+L FS + + L + TL + GQ+ +G Y ++S + Sbjct: 483 GLLQYFSGVSDANVLSTPNLV-TLDNEEAKIVVGQNVPIPTGS---YSNLTSGNTNNAFN 538 Query: 309 THD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPS 364 T+D G+ LH P + G + L++ TE S V VN P++ R +TV + Sbjct: 539 TYDRRDVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADN 598 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G IVL GL++D+ Q +PLL IP +G LFR+ R++T + + ++PV + Sbjct: 599 GEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEGKTRQKTNLMV-----FLRPVII 653 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 D + A+A NR + I G Sbjct: 654 TD----------RETAQAVTSNRYDYIQG 672 >gi|120602835|ref|YP_967235.1| type II and III secretion system protein [Desulfovibrio vulgaris DP4] gi|120563064|gb|ABM28808.1| type II and III secretion system protein [Desulfovibrio vulgaris DP4] Length = 524 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/265 (24%), Positives = 112/265 (42%), Gaps = 42/265 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS---------------SGPSKSFAADFGG--K 237 Q+ LK I E RD + +G Q G S SGP+K GG Sbjct: 253 QILLKAHIVEATRDTARDLGIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVP 312 Query: 238 FVSEGG--------DFSVK--------------GVLDRFSFETVLHALERATAIRTLAEP 275 + GG +F V G + E L AL+ + L+ P Sbjct: 313 VIPPGGLSGQGFGMNFPVNKAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSP 372 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +++ + Q A FT G+ + +++ G V D + L TP V+ + L++Q + Sbjct: 373 SISTLDNQMA-FTENGEKVPYVSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVK 431 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 E + P ++ +TT+ + G T+V++GL K+ ++G+P L + +G Sbjct: 432 KDEVDLTRTVEGNPFIIKKQTETTLIVQDGETVVISGLTKERSSSRRQGLPYLQDVEGIG 491 Query: 396 ALFRN-SRFNREETEIFIAATPFLV 419 ALF N S+ N+ E ++ I TP ++ Sbjct: 492 ALFGNDSKANKLE-DVLIFITPAIL 515 >gi|85712761|ref|ZP_01043805.1| Type II secretory pathway [Idiomarina baltica OS145] gi|85693401|gb|EAQ31355.1| Type II secretory pathway [Idiomarina baltica OS145] Length = 560 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/252 (25%), Positives = 105/252 (41%), Gaps = 33/252 (13%) Query: 195 QVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 QV L+ I EV +G +Q I + S F F G ++ + GV Sbjct: 288 QVILEARIVEVT------LGDQYQQGIRWNELNMSGRFDFGFNGSVPNDIAAATADGVFG 341 Query: 252 ---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + F L L+ +++ L+ P +TA + Q A G Y T +S T+VT Sbjct: 342 LTFNSNRFTGFLELLQTQGSVQVLSNPRVTASNNQKAVIKIGEDEYYVTDVTSQTNTTVT 401 Query: 309 THDY------------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMP 349 G+ L TP + G + L + V E IG +P Sbjct: 402 QDALTSSNVDLTPFFSGISLDVTPQISDDGEVTLHVHPSVVETKEQEKVITIGDETLRLP 461 Query: 350 SYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 R +R++DT V SG +VL GL+++ + E +PLL +P++G LF+N + + Sbjct: 462 LARSNIRESDTIVRARSGEIVVLGGLMQNSTSENVEKVPLLGDLPLVGNLFKNKSNDASK 521 Query: 408 TEIFIAATPFLV 419 E+ I P ++ Sbjct: 522 KELVILIKPTVI 533 >gi|258593213|emb|CBE69552.1| exported protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 726 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 19/195 (9%) Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 V+ F+ +D+ F VL+ L T + LA P L + + A+ G + T Sbjct: 489 VAPPSGFTFTTFVDKEQFRLVLNNLASVTKVEVLANPHLLTANNKEANIQIGQEVPIPTG 548 Query: 299 SSSTGATSVTT-------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-- 349 + S G + V D G++L P V + L I+TE + AG++P Sbjct: 549 TQSVGTSDVANVFSTFQRKDIGIILKIKPHVNEKRLVTLDIETENTS-----VAGEVPDA 603 Query: 350 -----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 S+ T + + ++V+ G+++ D + GIP LS IP+LG LFRN+ + Sbjct: 604 LQGGASFNKTTTKTALVVQDSQSLVIGGIIRTDKSKGYSGIPFLSTIPLLGYLFRNTSED 663 Query: 405 REETEIFIAATPFLV 419 TE+ I TP ++ Sbjct: 664 LIRTELVILITPHVI 678 >gi|225850118|ref|YP_002730352.1| fimbrial assembly protein PilQ [Persephonella marina EX-H1] gi|225646446|gb|ACO04632.1| fimbrial assembly protein PilQ [Persephonella marina EX-H1] Length = 608 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 17/241 (7%) Query: 195 QVTLKVTIAEV----RRDILKQIGFQHSI------TGSSSGPSKSFAADF--GGKFVSEG 242 Q+ ++ I ++ +RD+ Q GF S G ++G + + DF G V +G Sbjct: 367 QIAIEARIVQIESSYKRDLGIQWGFAASGGAGNIGYGVTTGTATGYMFDFPAGNVDVGKG 426 Query: 243 GDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 S+ G++ S + L ALE+ R L+ P + I G+ A + G + Y T + Sbjct: 427 ASMSI-GIVRGLTTSLDIQLSALEQIGKSRILSRPKVITIDGEGAEISQGIEVPYSTFGA 485 Query: 301 STGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 + GA +L P G I + I+ P G P + + Sbjct: 486 AGGAAIARVQFKKALLKLNVIPRTTLDGNIIMNIELTQDVPDFGRAVNGQPPINTKSITS 545 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V G TIV+ G+L+ Q+ + G+P L +P+ G LF+N N E+ I TP + Sbjct: 546 KVIAKDGTTIVIGGILEKTEQETENGVPGLRNVPLFGWLFKNKGINTTNKELLIFITPKI 605 Query: 419 V 419 + Sbjct: 606 I 606 >gi|225850524|ref|YP_002730758.1| putative pilus [Persephonella marina EX-H1] gi|225645353|gb|ACO03539.1| putative pilus [Persephonella marina EX-H1] Length = 524 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 117/252 (46%), Gaps = 35/252 (13%) Query: 198 LKVTIAEVRRDILKQI---------GFQHSITGSS-----SGPSKSFAADFGGKFVSEGG 243 LK ++EV++ +L + G Q+ I S+ +G S S S G Sbjct: 272 LKKILSEVKKQVLIESKIVEVTLSDGMQYGINWSALLRNVAGASISLRQTLA--LPSSYG 329 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG--QHLYKTVSSS 301 + V G+ F V++AL I TL+ P + ++GQ+A +SG + K +++ Sbjct: 330 EVVVAGL----DFNAVINALSSVGRIETLSNPRIRVLNGQTALISSGVVVPYWEKQITTL 385 Query: 302 TGATSVTTHDY-------GVVLHFTPTV----LSPGRIGLRIQTEVSEPVIGVN--AGDM 348 T + Y GV+L TP + + + + + E ++ ++ N + Sbjct: 386 GTTTVTQSVMYIRRSVLSGVLLGVTPYIEGDHIMINIVPVSTKIEGTKQLVENNEVVAEA 445 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P +++A T +++ G I++ G++ + + + IPLLS IP+ G LF+N + RE+ Sbjct: 446 PVLNIKEAGTIIKVKDGDLIIIGGMINTEKRVEENKIPLLSNIPVFGNLFKNKKVYREKK 505 Query: 409 EIFIAATPFLVK 420 E+ I P ++K Sbjct: 506 ELIIFLKPRIIK 517 >gi|319944755|ref|ZP_08019019.1| fimbrial assembly protein PilQ [Lautropia mirabilis ATCC 51599] gi|319742004|gb|EFV94427.1| fimbrial assembly protein PilQ [Lautropia mirabilis ATCC 51599] Length = 747 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 8/171 (4%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L RF L ALE + ++ P + S + A G + Y++ +SS GATSV+ Sbjct: 576 LSRF-INLELSALEADQRGKVVSSPRVLTSSQRPAVIEQGTELPYQSATSS-GATSVSFR 633 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTI 368 + L TP + G + L + +VS +G NAG + R T V + GGT+ Sbjct: 634 KANLRLEVTPQITPEGNVILDV--DVSRDAVGQLTNAG--YAIDTRHVKTQVLVEDGGTV 689 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V+ G+ + + + +PLL IP+LG LFR++ + TE+ + TP +V Sbjct: 690 VIGGIYEQFERNRTDKVPLLGDIPVLGYLFRSTTRTNDRTELLVFLTPRIV 740 >gi|304311962|ref|YP_003811560.1| Fimbrial type-IV assembly protein, outer membran secretin [gamma proteobacterium HdN1] gi|301797695|emb|CBL45917.1| Fimbrial type-IV assembly protein, outer membran secretin [gamma proteobacterium HdN1] Length = 710 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 18/198 (9%) Query: 238 FVSEGGD--------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 F +GGD F KG+LD L ALE ++ P + Q A S Sbjct: 520 FSVQGGDASSLALGLFDDKGLLD-----IELSALESEGRADVVSTPKVLTADQQKAKVAS 574 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGD 347 G + Y+ SSS GAT+ + + + L TP + GRI + ++ V++ IG A + Sbjct: 575 GTEIPYQEASSS-GATTTSFKEAVLSLEATPQITPDGRIIMDLK--VNQDSIGDIDTASN 631 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P +T+V + +G T+VL G+ + + + P L +P+LG LFR + ++ + Sbjct: 632 IPIIDTNSVETSVIVDNGQTVVLGGVFRSEEIKSVAKTPFLGDLPVLGRLFRKNVSSQAK 691 Query: 408 TEIFIAATPFLVKPVAMR 425 TE+ + TP +V V + Sbjct: 692 TELLVFITPKIVTDVVAK 709 >gi|148977866|ref|ZP_01814421.1| MSHA biogenesis protein MshL [Vibrionales bacterium SWAT-3] gi|145962935|gb|EDK28206.1| MSHA biogenesis protein MshL [Vibrionales bacterium SWAT-3] Length = 549 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 21/186 (11%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA--------- 304 SFE VL ++ + L+ P +TA + Q A G Y T +SS+ G+ Sbjct: 340 SFEAVLSFMDTQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSAVGSGDNANVAPE 399 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------DMPSYR--V 353 +T G+ L TP + G + L + EV + V +N G ++P + + Sbjct: 400 VELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEKEVKKLNLGSTTGVVELPLAKSSI 459 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R++D+ + G +V+ GL+K + + +P L IP LG LFRN+ ++TE+ I Sbjct: 460 RESDSVIRARDGDVVVIGGLMKSNTSDVTSKVPFLGDIPALGHLFRNTNQLTQKTELVIL 519 Query: 414 ATPFLV 419 P +V Sbjct: 520 LKPTVV 525 >gi|255320952|ref|ZP_05362125.1| general secretion pathway protein D [Acinetobacter radioresistens SK82] gi|262379956|ref|ZP_06073111.1| general secretion pathway protein D [Acinetobacter radioresistens SH164] gi|255301916|gb|EET81160.1| general secretion pathway protein D [Acinetobacter radioresistens SK82] gi|262298150|gb|EEY86064.1| general secretion pathway protein D [Acinetobacter radioresistens SH164] Length = 751 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 74/278 (26%), Positives = 121/278 (43%), Gaps = 37/278 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------KSFAADF--GGKFVSE 241 QV ++ I EV D Q+G Q ++ SSG S AA + GG ++ Sbjct: 389 QVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLVNFTNVGSSLASLAAGYLAGGSALAN 448 Query: 242 G-----------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 GD+ R + ++ AL+ T L+ P++ + + A G Sbjct: 449 AASNLRGSSLLLGDYREGADGSRRLYGALIQALKDNTKSNLLSTPSIVTMDNEEAYIVVG 508 Query: 291 GQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342 + T S +T A T+V D GV L P + G + L ++ EVS +P G Sbjct: 509 QNVPFVTGSVTTNANGVNPYTTVERKDVGVTLKVIPHIGENGTVRLEVEQEVSNVQPNKG 568 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 A D+ + + R T V G T+VL GL+ D+ ++ +P L IP +G LFR+ Sbjct: 569 -QATDLVTSK-RAIKTAVLAEHGQTVVLGGLISDNSIYSRQAVPGLGAIPGIGRLFRSDS 626 Query: 403 FNREETEIFIAATPFLVKPVA-MRDLS--RPDDHYSVE 437 + E+ + + P +V + +R L+ R D YS++ Sbjct: 627 NSNEKRNLLVFIHPTIVGDASDVRRLTQRRYDQLYSLQ 664 >gi|9630755|ref|NP_047359.1| maturation protein [Enterobacteria phage If1] gi|6136220|sp|O80300|G4P_BPIF1 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|3676288|gb|AAC62158.1| maturation protein [Enterobacteria phage If1] Length = 429 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 11/180 (6%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S GG F G+ + L ALE ++ L+ P + +SGQ +FT+G + T Sbjct: 244 STGGSF---GIFNGNILGLSLKALETSSKSTLLSMPRILTMSGQPGTFTAGQNVPFVTGR 300 Query: 300 SSTGATSVTT-------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 + A +V HD G+ L P V G + + + T A D+ + Sbjct: 301 VTGEAANVNNPFQTIERHDVGISLKVVPVVTPGGLLIMDVSTNADSISDSQTASDIIT-N 359 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R TTV+L SG T++L G++ + +P +SKIP++GALF + N + ++I Sbjct: 360 TRSISTTVQLKSGQTVLLGGMVDNRESDSDSSVPWVSKIPLIGALFTSKSSNANKRTLYI 419 >gi|58091874|gb|AAW65366.1| gene IV protein [synthetic construct] Length = 437 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/273 (24%), Positives = 117/273 (42%), Gaps = 39/273 (14%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD--ILKQIGFQHSI---------T 220 G N S S +MN L +T +V RD +++ + F+ S+ Sbjct: 178 GNNSLLVSGSAAIMNAL--------ADFITSIDVARDQVLIQSLMFETSLVNGVDLSFAA 229 Query: 221 GSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 GS+SG A F G + GG F G+ + + A++ + + ++ P Sbjct: 230 GSASG--DKVAGGFNTSALGTALSTAGGSF---GIFNGNVLALSIQAVKNDSNSKVISTP 284 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTVLSPGR 327 + SGQ+ + S GQ++ TG ++ D GV L TP V+ G+ Sbjct: 285 RILTQSGQTG-YISVGQNVPFVTGKVTGEAANVNNPFQTIERRDVGVSLKVTPVVMGNGQ 343 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L I T+ + A D+ + + R TTV++ G T++L GL+ + +P Sbjct: 344 LVLTIDTKADSLTSQMTASDIITNQ-RHMQTTVQIKDGQTLLLGGLIDSNTTDGNRSVPW 402 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P++G LFR+ + E +F+ T ++K Sbjct: 403 FESVPVIGWLFRSHSDSHNERTMFVLLTAHVIK 435 >gi|85712729|ref|ZP_01043774.1| Type II secretory pathway, component PulD [Idiomarina baltica OS145] gi|85693461|gb|EAQ31414.1| Type II secretory pathway, component PulD [Idiomarina baltica OS145] Length = 695 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 18/190 (9%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------- 305 + V+ A+ + T LA P++ + + ASF G + V + TG+T Sbjct: 456 WAAVVQAVSQDTNSNILATPSIVTVDNEEASFLVG-----QEVPTITGSTLGNDNQSPFQ 510 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +V + G+ L TP + + + I+ EVS + G + D+ + R+ TTV G Sbjct: 511 TVDRQEIGIKLKVTPQINEGNAVQMVIEQEVSS-LSGATSVDVIVNK-RELKTTVMAEDG 568 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-M 424 TIVL GL+ +D+Q+ IPLL IP +G LF ++ + ++ + + P +V+ + + Sbjct: 569 ETIVLGGLIDEDVQESVSKIPLLGDIPFIGRLFSSTSTSTQKRNLMVFIRPTIVRNGSKL 628 Query: 425 RDLSRPDDHY 434 D+S+ +Y Sbjct: 629 SDISKQKYNY 638 >gi|119776501|ref|YP_929241.1| type IV pilus biogenesis protein PilQ [Shewanella amazonensis SB2B] gi|119769001|gb|ABM01572.1| type IV pilus biogenesis protein PilQ [Shewanella amazonensis SB2B] Length = 685 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ +A P +T S Q A++ G + +SS+G+ Sbjct: 506 FHVAKLADGTVLDMELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVSASSSGS 564 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 T+V + L TP + R+ L I + + G + ++ T V + Sbjct: 565 TTVEFKKAVLSLRVTPQITPDNRVILDLEITQDSRGETVDTATGRAVAIDTQRIGTQVLV 624 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G TIVL G+ + ++ +P+L IP++G LFRN+ E E+ I TP +V Sbjct: 625 DNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFVTPKIV 681 >gi|332527680|ref|ZP_08403723.1| general secretion pathway protein D [Rubrivivax benzoatilyticus JA2] gi|332112080|gb|EGJ12056.1| general secretion pathway protein D [Rubrivivax benzoatilyticus JA2] Length = 388 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 24/212 (11%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL----ERATAIRTLAEPTLTAISGQSAS 286 AA VS G +V G+L R+ L AL + T ++ P L + + A Sbjct: 111 AASGSASGVSLGEGLNV-GILRRYGGTYALGALANLLQSQTKTNIVSTPNLITLDNEEAK 169 Query: 287 FTSG-------GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE---- 335 G GQ+ ++++ ++ D G+ L P + G + + I E Sbjct: 170 IVVGENVPFITGQYTNTGTATTSPFQTIERKDVGITLRIRPQIGESGTVRMTIYQEQSSV 229 Query: 336 VSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +S +G NAG PS R ++ V + G IVL GL++D + K +PLL IP L Sbjct: 230 LSTATVGTTNAG--PSTTKRSIESQVVVEDGQIIVLGGLVQDSYVEEKSKVPLLGDIPGL 287 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GALFR+ ++ T + + ++PV MRD Sbjct: 288 GALFRSESRTKKRTNLMV-----FLRPVVMRD 314 >gi|299771842|ref|YP_003733868.1| general secretion pathway protein D [Acinetobacter sp. DR1] gi|298701930|gb|ADI92495.1| general secretion pathway protein D [Acinetobacter sp. DR1] Length = 757 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-- 310 R ++ ++ AL+ T L+ P++ + + A G + T S +T +T + + Sbjct: 476 RKAYGALIQALKSNTKSNLLSTPSIVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTT 535 Query: 311 ----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSG 365 D GV L P + G + L ++ EVS A D+ + + R T V G Sbjct: 536 VERKDVGVTLKVVPHIGEGGTVRLEVEQEVSNVQTSKGQAADLITNK-RAIKTAVLAEHG 594 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T+VL GL+ DD++ ++GIP LS IP +G LFR+ + + + + P +V Sbjct: 595 QTVVLGGLVSDDVELSRQGIPGLSSIPYVGRLFRSDSRSNTKRNLLVFIHPTIV 648 >gi|37681131|ref|NP_935740.1| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016] gi|37199882|dbj|BAC95711.1| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016] Length = 547 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 112/269 (41%), Gaps = 31/269 (11%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++V L I+ E QV L+ I EV Q G S +S G S S + G Sbjct: 255 REVRQFLGISQERMQRQVILEAKILEVTLSDGYQQGINWSNISASIGNSGSIVVNRPGST 314 Query: 239 VSEGGDF--SVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 V G D S+ G + SFE VL + + L+ P +TA + Q A G Sbjct: 315 VLPGLDAIGSLLGGQTNVTISDGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGN 374 Query: 292 QHLYKT-VSSSTG---------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSE 338 Y T +SS+ G ++T G+ L TP + G + L + EV E Sbjct: 375 DQYYVTALSSNVGNDDKSKAVPEVTLTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEE 434 Query: 339 PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 +N G + +R++D+ + G +V+ GL+K + + +P Sbjct: 435 ETKQLNLGGDFQNVTLPLAKSSIRESDSVIRARDGDVVVIGGLMKSNTIERVSKVPFFGD 494 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG LFRN+ ++TE+ I P +V Sbjct: 495 IPALGHLFRNTSNLTQKTELVILLKPTVV 523 >gi|238025716|ref|YP_002909947.1| general secretory pathway protein D [Burkholderia glumae BGR1] gi|237874910|gb|ACR27243.1| General secretory pathway protein D [Burkholderia glumae BGR1] Length = 765 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 16/179 (8%) Query: 259 VLHALERATAIRTLAEPTLTAIS--------GQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +L A ++ L+ P L + GQ+ +G + +SS + Sbjct: 488 LLQAFSGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIATGSYSNLTSGNSSNAFNTFDRQ 547 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGT 367 D G+ LH P + G + L+I TE S V A +P++ R +TV +G Sbjct: 548 DVGLTLHVKPQITEGGILKLQIYTEDSAVVPSTTSSTAVGVPTFSKRSIQSTVLCDNGEI 607 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IVL GL++D+ Q +PLL IP +G LFR+ R++T + + ++PV + D Sbjct: 608 IVLGGLMQDNYQVGNNKVPLLGDIPWIGQLFRSEGKQRQKTNLMV-----FLRPVILTD 661 >gi|21241466|ref|NP_641048.1| type II secretion system protein D [Xanthomonas axonopodis pv. citri str. 306] gi|21106808|gb|AAM35584.1| type II secretion system protein D [Xanthomonas axonopodis pv. citri str. 306] Length = 692 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F ++ A++ T L+ P++ + + A G Q + T GA ++ Sbjct: 453 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNPFRTIQR 511 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTI 368 D GV L P + + G I L I+ EVS V+A + R+ +T V + +G + Sbjct: 512 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIV 571 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GLL + +Q E +PLL +P LGALFR+ NR++T + + ++P +RD Sbjct: 572 ALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMV-----FIRPTIIRD 624 >gi|262273882|ref|ZP_06051695.1| MSHA biogenesis protein MshL [Grimontia hollisae CIP 101886] gi|262222297|gb|EEY73609.1| MSHA biogenesis protein MshL [Grimontia hollisae CIP 101886] Length = 533 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG--------PSKSFAADFGGKFVSEGGDFS 246 QV L+ + EV Q G S G+S G P A D + GG + Sbjct: 261 QVILEAKVLEVTLSDGYQQGVNWSNIGASIGSGGINISRPETKLAGDMISNVI--GGQTN 318 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT- 305 + + +F +V++ L+ + L+ P +TA + Q A GG + T SS+ + Sbjct: 319 I--TITDGNFSSVMNFLDTQGDVNVLSSPRVTAANNQKAVIKVGGDEYFVTDISSSDTSG 376 Query: 306 ---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDMP-- 349 +T G++L TP + + L + V E I + P Sbjct: 377 DNSDSGPNIELTPFFSGILLDVTPQIDDDNGVLLHVHPAVVDVVTEEKTIQLGTSSEPYV 436 Query: 350 ----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +R++D+ + SG +V+ GL+K +++ +PLL IP LG LFRN + Sbjct: 437 LPLAKTAIRESDSVIHARSGDVVVIGGLMKSSYEEVVSKVPLLGDIPGLGHLFRNVNRMK 496 Query: 406 EETEIFIAATPFLV 419 ++TE+ I P +V Sbjct: 497 QKTELVILLQPSVV 510 >gi|196232588|ref|ZP_03131440.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] gi|196223350|gb|EDY17868.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] Length = 880 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 55/211 (26%) Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------- 297 ++ GV F+ V+ AL + + L+ P +T SGQ A + Y T Sbjct: 617 AISGVFTDPQFQLVIRALNQKKGVDLLSSPKVTTKSGQRAVIEIIREFRYPTEFTPPQIP 676 Query: 298 -------------VSSSTGATSVT--------THDYGVVLHFTPTVLSPG---------- 326 +++TG+ VT T + GV L P + G Sbjct: 677 QTFGNTGAGILGGGAATTGSFPVTPTTPTAFETRNTGVTLEVEPVIGPDGYTIDLNLVPQ 736 Query: 327 --------RIGLRIQTEVSEPVIGV--------NAGDMPSYRVRKADTTVELPSGGTIVL 370 G I + V+ P+ GV N + P + RK T+V + G T+VL Sbjct: 737 VVEFEGFINYGSPITSSVTNPITGVSTQAVITPNVINQPIFSTRKVTTSVSVYDGSTVVL 796 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 GL+++D+Q++++ +P++ IPI+G LFR+S Sbjct: 797 GGLIREDVQKVEDKVPIIGDIPIVGRLFRSS 827 >gi|308048042|ref|YP_003911608.1| type IV pilus secretin PilQ [Ferrimonas balearica DSM 9799] gi|307630232|gb|ADN74534.1| type IV pilus secretin PilQ [Ferrimonas balearica DSM 9799] Length = 681 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 82/179 (45%), Gaps = 7/179 (3%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALER +A P LT + Q +F G + S+S+GA Sbjct: 502 FHVAKLGDGTLLDLELSALERENKGEIIASPRLTT-ANQYTAFIEQGTEIPFVQSTSSGA 560 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSV + L TP + RI L + + + G + ++ T V Sbjct: 561 TSVEFKKAVLGLTVTPQITPDNRIVLDLTVTQDTRGETVQTATGPAVAIDTQRISTQVLA 620 Query: 363 PSGGTIVLAGLLKDDIQQLKE--GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G TIVL G+ + QQL +PLL IP +G LFRNS+ E+ E+ I TP +V Sbjct: 621 QNGETIVLGGIFQQ--QQLNTVTKVPLLGDIPFVGVLFRNSQDFTEKKELLIFVTPKIV 677 >gi|254522160|ref|ZP_05134215.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14] gi|219719751|gb|EED38276.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14] Length = 733 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 85/189 (44%), Gaps = 15/189 (7%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSSTGATSVTTHDYG 313 V+ AL++ T +R L P++ + A+ G + T ++ +SV D G Sbjct: 532 VVSALDKVTDVRLLQTPSVFVRNNAEATLNVGDKVPINTTTVNTGVGTSSYSSVQYIDTG 591 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 V+L P V G + L I EVS E P +K T + SG T Sbjct: 592 VILKVRPRVTRDGTVFLDIVQEVSSASDVPETCNPTERNCNPRISTKKLSTEAAVQSGDT 651 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRD 426 I+LAGL+ D GIP LSKIP++GALF +E+ + TP +V+ R+ Sbjct: 652 IMLAGLITDSATDGSSGIPGLSKIPVVGALFGQKTRTSRRSEVIVLLTPTIVRNAQESRN 711 Query: 427 LSRPDDHYS 435 L+ D YS Sbjct: 712 LT---DEYS 717 >gi|222109862|ref|YP_002552126.1| general secretion pathway protein d [Acidovorax ebreus TPSY] gi|221729306|gb|ACM32126.1| general secretion pathway protein D [Acidovorax ebreus TPSY] Length = 781 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 8/152 (5%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 I G + F +G Y S GA T+V D G++L P + G + L + E Sbjct: 552 IIGNNVPFVTGS---YANTGGSGGAVNPFTTVERKDVGLMLRVRPQINENGTVKLTMYQE 608 Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VS+ ++ + PS R ++TV + G IV+ GLL+D+ ++ +P++ +P++ Sbjct: 609 VSKVAESTLSNANGPSTSKRSIESTVLVDDGSVIVIGGLLEDNYALNQDKVPVMGDLPVV 668 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 G LFRN + R++T + + P +++ A D Sbjct: 669 GGLFRNEKRTRQKTNLMVFLRPMVIRDSAASD 700 >gi|325521649|gb|EGD00419.1| general secretion pathway protein D [Burkholderia sp. TJI49] Length = 699 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 19/163 (11%) Query: 295 YKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPS 350 Y ++S T + + T+D G+ LH P + G + L++ TE S NA PS Sbjct: 538 YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVDTATTNAQTGPS 597 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R +T+ +G IVL GL++D +PLL IP +G LFR+ R++T + Sbjct: 598 FTKRSIQSTILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNL 657 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 + ++PV + D D A+A NR + I G Sbjct: 658 MV-----FLRPVIISD----------RDTAQAVTANRYDYIQG 685 >gi|46579684|ref|YP_010492.1| type II/III secretion system protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449099|gb|AAS95751.1| bacterial type II/III secretion system protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233480|gb|ADP86334.1| type II and III secretion system protein [Desulfovibrio vulgaris RCH1] Length = 524 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/265 (24%), Positives = 112/265 (42%), Gaps = 42/265 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS---------------SGPSKSFAADFGG--K 237 Q+ LK I E RD + +G Q G S SGP+K GG Sbjct: 253 QILLKAHIVEATRDTARDLGIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVP 312 Query: 238 FVSEGG--------DFSVK--------------GVLDRFSFETVLHALERATAIRTLAEP 275 + GG +F V G + E L AL+ + L+ P Sbjct: 313 VIPPGGLSGQGFGMNFPVNKAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSP 372 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +++ + Q A FT G+ + +++ G V D + L TP V+ + L++Q + Sbjct: 373 SISTLDNQMA-FTENGEKVPYVSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVK 431 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 E + P ++ +TT+ + G T+V++GL K+ ++G+P L + +G Sbjct: 432 KDEVDLTRTVEGNPFIIKKQTETTLIVQDGETVVISGLTKERSSTRRQGLPYLQDVEGIG 491 Query: 396 ALFRN-SRFNREETEIFIAATPFLV 419 ALF N S+ N+ E ++ I TP ++ Sbjct: 492 ALFGNDSKANKLE-DVLIFITPAIL 515 >gi|308535177|ref|YP_002137419.2| type II secretion system protein GspD [Geobacter bemidjiensis Bem] gi|308052522|gb|ACH37623.2| type II secretion system protein GspD, putative [Geobacter bemidjiensis Bem] Length = 640 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 114/250 (45%), Gaps = 18/250 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVLD 252 QV ++ IAEV + K++G Q + TG+S+G + D G G ++ G L Sbjct: 357 QVFVQAMIAEVSANKAKELGLQWGVVTGASNGTLSTVGTFDPFGAVAGLTGTLTLAGQLG 416 Query: 253 RFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTG 303 F L AL+ A+ L+ P + + A G L T +STG Sbjct: 417 ITPPDAGVALFPATLKALQSNGALNVLSTPNIMTSDNKEAEIFVGENVPFLSGTNLTSTG 476 Query: 304 AT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--RVRKADTT 359 + S+ D G++L P + I L I E+S V P+ R A T+ Sbjct: 477 LSQQSIERKDTGIILKIKPQISEGEYIKLDIYQEISA-VKDFGTATNPNLGSTKRSAKTS 535 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + + T+++ GL++D Q + IPLL IP+LG LF+ + R++T + I TP ++ Sbjct: 536 VVVKNTDTVIIGGLIQDTDQVTESKIPLLGDIPLLGWLFKTKKTTRDKTNLLIMLTPRII 595 Query: 420 KPVAMRDLSR 429 K RD++ Sbjct: 596 KDA--RDMAE 603 >gi|54310371|ref|YP_131391.1| putative MSHA biogenesis protein MshL [Photobacterium profundum SS9] gi|46914812|emb|CAG21589.1| putative MSHA biogenesis protein MshL [Photobacterium profundum SS9] Length = 556 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 106/254 (41%), Gaps = 31/254 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSF-----AADFGGKFVSE--GGDFS 246 QV L+ I EV Q G S IT S G F +A GG +S GG + Sbjct: 281 QVVLEAKIMEVTLSDGYQQGVNWSNITSSIGGTDIVFGRTGPSALPGGDAISALLGGQTN 340 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TG 303 + + +FE VL LE + L+ P +TA + Q A GG + T S +G Sbjct: 341 L--TISDGNFEAVLSFLETQGDLNVLSSPRVTAANNQKAVIKVGGDQYFVTDISGGEVSG 398 Query: 304 ATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPV-----------IGVNA 345 S + D G+ L TP + G + L + V E V GV Sbjct: 399 DNSTSAPDIELTPFFSGISLDVTPQIDDEGGVLLHVHPTVVEVVNETKEIDLGATFGVYK 458 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + +R++D+ + SG +V+ GL+K I +P L IP LG LFRN + Sbjct: 459 LPLAKSSIRESDSVIFARSGDVVVIGGLMKSAINDQVSKVPFLGDIPGLGHLFRNVNKVK 518 Query: 406 EETEIFIAATPFLV 419 +TE+ I P +V Sbjct: 519 SKTELVILLKPTVV 532 >gi|134294193|ref|YP_001117928.1| general secretion pathway protein D [Burkholderia vietnamiensis G4] gi|134137350|gb|ABO53093.1| general secretion pathway protein D [Burkholderia vietnamiensis G4] Length = 774 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336 + GQ+ +G Y ++S T + + T+D G+ LH P + G + L++ TE Sbjct: 526 VVGQNVPIATGS---YLNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTED 582 Query: 337 SEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S V G + P++ R +T+ +G IVL GL++D+ Q +PLL IP +G Sbjct: 583 SAVVAGTTSAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 642 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LFR+ R +T + + P ++ Sbjct: 643 QLFRSESKQRAKTNLMVFLRPVII 666 >gi|320155211|ref|YP_004187590.1| MSHA biogenesis protein MshL [Vibrio vulnificus MO6-24/O] gi|319930523|gb|ADV85387.1| MSHA biogenesis protein MshL [Vibrio vulnificus MO6-24/O] Length = 531 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 112/269 (41%), Gaps = 31/269 (11%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++V L I+ E QV L+ I EV Q G S +S G S S + G Sbjct: 239 REVRQFLGISQERMQRQVILEAKILEVTLSDGYQQGINWSNISASIGNSGSIVVNRPGST 298 Query: 239 VSEGGDF--SVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 V G D S+ G + SFE VL + + L+ P +TA + Q A G Sbjct: 299 VLPGLDAIGSLLGGQTNVTISDGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGN 358 Query: 292 QHLYKT-VSSSTG---------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSE 338 Y T +SS+ G ++T G+ L TP + G + L + EV E Sbjct: 359 DQYYVTALSSNVGNDDKSKAVPEVTLTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEE 418 Query: 339 PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 +N G + +R++D+ + G +V+ GL+K + + +P Sbjct: 419 ETKQLNLGGDFQNVTLPLAKSSIRESDSVIRARDGDVVVIGGLMKSNTIERVSKVPFFGD 478 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG LFRN+ ++TE+ I P +V Sbjct: 479 IPALGHLFRNTSNLTQKTELVILLKPTVV 507 >gi|77919728|ref|YP_357543.1| type IV pilus biogenesis protein PilQ [Pelobacter carbinolicus DSM 2380] gi|77545811|gb|ABA89373.1| type IV pilus biogenesis protein PilQ [Pelobacter carbinolicus DSM 2380] Length = 874 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 6/168 (3%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +D+ + L ALE++ R ++ P ++ ++G+ A G + Y +VS T Sbjct: 707 VDKTVLDLRLAALEQSGHGRIVSTPRVSTLNGEEAEVAQGTEIPYLSVSDDGTKTEFKKA 766 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTI 368 + L TP + G + L I E G N G + P+ ++A T V + G T Sbjct: 767 ELS--LKVTPEINPDGSVILEI--EAKNDSRGANTGLSEAPAIDTKRATTKVLVKDGETT 822 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 V+ G+ D + G+P L +PILG LF++ + E E+ + TP Sbjct: 823 VIGGIFIQDKSESDSGVPWLMNVPILGHLFKSKSVSEERRELLVFITP 870 >gi|261254112|ref|ZP_05946685.1| type IV pilus biogenesis protein PilQ [Vibrio orientalis CIP 102891] gi|260937503|gb|EEX93492.1| type IV pilus biogenesis protein PilQ [Vibrio orientalis CIP 102891] Length = 563 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+R + ++ P L + + A G + Y SSS+GATSV + L Sbjct: 401 LSALQRESKAEVISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVV 459 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P ++ G+ + ++ T V + +G T+VL G+ + Sbjct: 460 PQITPDNRLVLDLSVTQDRPGDIVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHS 519 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +P+L +P+LGALFR + ++E+ I TP +V Sbjct: 520 VTDAVDKVPMLGDLPLLGALFRRTYQKMGKSELLIFVTPKVV 561 >gi|207723669|ref|YP_002254067.1| type II secretory pathway, gspd-related protein [Ralstonia solanacearum MolK2] gi|206588873|emb|CAQ35835.1| type II secretory pathway, gspd-related protein [Ralstonia solanacearum MolK2] Length = 778 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 159/398 (39%), Gaps = 65/398 (16%) Query: 51 SIGLNKVIILQVPVDVQD-VLVSDPTKADVVVHSPRTMYL----FGKNVGQANVILI--G 103 + GLN + V D++ + VS+ T D V M L K V AN + I Sbjct: 213 TTGLNVIFDRDVRTDLKTTIFVSNATLEDTV-----DMILMQSQLAKKVMNANTVFIYPA 267 Query: 104 HDGKQMLNLDI------LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 KQ D+ L D H+E L+ + I + ++TV + +I+ + Sbjct: 268 TAAKQQEYQDLKVRTFQLSNTDAKHIEALLKSLLKIKEIVTDERANTVSIRATPESIRVA 327 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 +R + + E +V L+V + EV RD L +G Sbjct: 328 ERMIAAQDL-------------------------PEPEVMLEVEVLEVSRDRLTDLGIDW 362 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + PS AA +G + G+ +F+ T LA P + Sbjct: 363 PNSFTLGTPSS--AATWGDLHHLTINRLTASGLSATANFKLT------DTDANLLASPRI 414 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + A G + + SS + S+ D G+ L P V +G++ Sbjct: 415 RTRNKEKAKILIGDKVPVISSSSVPSTSGPVYSQSIQYLDVGIKLEVEPQVYRDNDVGIK 474 Query: 332 IQTEVSEPVIGVNAGDMPS------YRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + EVS +++ + + Y++ R A T++ L G T VL GL++D+ + Sbjct: 475 MSLEVSNITQIISSSNAQTGLSSLAYQIGTRNASTSLRLKDGETQVLGGLIQDEDRDAAN 534 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P L ++P+LG LF N + ++TEI + TP +V+P Sbjct: 535 KVPGLGQLPVLGRLFSNHNGDHKKTEIVLQITPHIVRP 572 >gi|192358819|ref|YP_001982858.1| MSHA biogenesis protein MshL [Cellvibrio japonicus Ueda107] gi|190684984|gb|ACE82662.1| MSHA biogenesis protein MshL [Cellvibrio japonicus Ueda107] Length = 578 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 82/337 (24%), Positives = 148/337 (43%), Gaps = 58/337 (17%) Query: 137 RVEMVSDTVVLHGMVRTI------QDSQRAVELSETFLSQSGRN-----QYANSSSKKVM 185 RV+ ++ T H + +TI ++ +R+V +S Q+G + SS + + Sbjct: 220 RVQTLNRTDFWHSLEKTILSIIGGKEGERSVMISP----QAGMVVVKALPHELSSVRDYL 275 Query: 186 NLLNIAGEDQVTLKVTIAEVRRD-----------ILKQIGFQHSITGSSSGPSKSFAADF 234 ++ + QV L+ I EVR I Q+G+ + + S S ++ Sbjct: 276 ERSELSAKRQVILETKILEVRLSEGFEAGVNWGAISGQLGYSYGSGRGTISASDSLEMNY 335 Query: 235 GGKF--------VSEGGDFSVK----GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G F ++E ++ K G++ +L LE A++ L+ P ++ ++ Sbjct: 336 GPGFQMTDATRTITESSEYGGKDLFAGLVQVADITKLLSLLETQGAVQVLSSPRVSTVNN 395 Query: 283 QSASFTSGGQHLYKTVSSS---TGATSVTTHD--------YGVVLHFTPTVLSPGRIGLR 331 Q A G + T SS T A ++T G+ L TP + G + L Sbjct: 396 QKAVIRVGYDEYFVTGISSNTTTNAAAITNTPNIELSPFFSGISLDVTPQISEAGEVILH 455 Query: 332 IQ---TEVSEPVIGVNAGD----MP-SYR-VRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 I +EV++ + GD +P + R +R++D+ V+ +G IVL GL+ + +Q Sbjct: 456 IHPIVSEVTDQLKVFTVGDENFSLPLALRGIRESDSIVKAANGQVIVLGGLMTESNRQTD 515 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 PLL IPI+ +LFR ++ +TE+ I P +V Sbjct: 516 GKRPLLGDIPIVNSLFRTKNKSKSKTELVILLRPIVV 552 >gi|9630770|ref|NP_047372.1| putative maturation protein [Vibrio phage fs2] gi|3702216|dbj|BAA33484.1| unnamed protein product [Vibrio phage fs2] Length = 500 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 21/188 (11%) Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F+ E GDF+ ++ A+ ++ R L+ P + I + + + GQ++ Sbjct: 270 FIFESGDFN-----------ALVKAISGSSDTRLLSRPNIL-IMDRERGYITVGQNVPFL 317 Query: 298 VSSST--GATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 VS+ST G TSV D GV L TP V+ I L I E S A D+ + + Sbjct: 318 VSNSTTDGGTSVQRIERKDVGVSLEVTPHVMGDDVI-LVINQESSSVTDSTIAADIITNK 376 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN--REETEI 410 R TTV + SG TIVL GL+ D+ + ++ G+P+L P++G LFR++ ++E + Sbjct: 377 -RTLMTTVAVKSGQTIVLGGLISDEKRNVESGVPVLKDTPLIGGLFRSTSTKNVQKELRV 435 Query: 411 FIAATPFL 418 I +T F+ Sbjct: 436 VIKSTVFI 443 >gi|188535320|ref|YP_001909117.1| Putative type II secretion system protein [Erwinia tasmaniensis Et1/99] gi|188030362|emb|CAO98253.1| Putative type II secretion system protein [Erwinia tasmaniensis Et1/99] Length = 384 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 2/151 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G + Y+ + ++G+T++ + + + TP V GRI L+ Sbjct: 232 IASPRLFTSHQQTASIKQGTEIPYEVSTGNSGSTTMEFKEAMLGMEVTPVVQPNGRILLK 291 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + P + +G+ + K DT V L G T+ L G+ + + + +P L Sbjct: 292 LHISQNVPGRNMRSGENEVLTIDKQEIDTQVILKDGQTLALGGIFQQQSESGRTKVPWLG 351 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+LGALFR+ ++ E+ I TP L++ Sbjct: 352 DIPLLGALFRHDVRQQKRRELVIFITPRLIR 382 >gi|330981434|gb|EGH79537.1| general secretion pathway protein D [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 589 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHD 311 + + L ALE + L+ P+L ++ Q A G S +T T++++ + Sbjct: 385 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVE 444 Query: 312 Y---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 Y GV+L P + G + + IQ +VS N D P R T V SG Sbjct: 445 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNANNSDANGNPRISTRSVATQVAAQSG 504 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ Sbjct: 505 QTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI 558 >gi|269104067|ref|ZP_06156764.1| MSHA biogenesis protein MshL [Photobacterium damselae subsp. damselae CIP 102761] gi|268163965|gb|EEZ42461.1| MSHA biogenesis protein MshL [Photobacterium damselae subsp. damselae CIP 102761] Length = 565 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 25/208 (12%) Query: 235 GGKFVSE--GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 GG +SE GG ++ + +F V+ L + L+ P +TA + Q A GG Sbjct: 336 GGNDISELLGGQTNI--TITDGNFSAVMRFLSTQGDLNVLSSPRVTAANNQKAVIKVGGD 393 Query: 293 HLYKT-VSSS--TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ---TEVSEP 339 + T VSSS +G S D G+ L TP + G + L + +V++ Sbjct: 394 EYFVTNVSSSNVSGDNSTAAPDINLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVTDE 453 Query: 340 VIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 V + GD + +R++D+ + SG +V+ GL+K +PLL I Sbjct: 454 VKSIELGDKFGTYQLPLAKSSIRESDSIIHAHSGDVVVIGGLMKTSTHDQVSKVPLLGDI 513 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P LG LFRN +++TE+ I P +V Sbjct: 514 PGLGNLFRNINKVQQKTELVILLKPTVV 541 >gi|194291071|ref|YP_002006978.1| general secretory pathway protein d, type II secretion system [Cupriavidus taiwanensis LMG 19424] gi|193224906|emb|CAQ70917.1| General Secretory Pathway protein D, type II secretion system [Cupriavidus taiwanensis LMG 19424] Length = 831 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 115/272 (42%), Gaps = 42/272 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAA-DFGG---------------- 236 QV ++ I EV ++G Q + SSSG + FA +FG Sbjct: 445 QVYIESMIVEVTATQASELGIQWQGLISSSSGNNNVFAGTNFGTGGQNILNLTLAGALAD 504 Query: 237 -----------KFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQS 284 + V + G ++ G+++R +L AL ++ L+ P L + + Sbjct: 505 SNRSAGIVAAQQLVPDIGGLNL-GIVNRAMGLGALLRALGTNGSVNLLSTPNLITLENEE 563 Query: 285 ASFTSGGQHLYKTVSS---STGATSVTT------HDYGVVLHFTPTVLSPGRIGLRIQTE 335 A G Q++ T S + GA SVT D G+ L P + G + ++I E Sbjct: 564 AKILIG-QNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQE 622 Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 S V N P+ VR +T V + G IVL GL++D+ + +PLL IP + Sbjct: 623 SSNVVQATANLIQGPTTNVRSIETNVLVDDGQIIVLGGLIEDNYGDGVQKVPLLGDIPWI 682 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 G LFR NR +T + + P++++ D Sbjct: 683 GGLFRYENKNRSKTNLLVFLRPYVMRTAGATD 714 >gi|9626242|ref|NP_040579.1| G IV protein [Enterobacteria phage Ike] gi|138049|sp|P03667|G4P_BPIKE RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|14956|emb|CAA26076.1| unnamed protein product [Enterobacteria phage Ike] Length = 437 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/273 (24%), Positives = 117/273 (42%), Gaps = 39/273 (14%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD--ILKQIGFQHSI---------T 220 G N S S +MN L +T +V RD +++ + F+ S+ Sbjct: 178 GNNSLLVSGSAAIMNAL--------ADFITSIDVARDQVLIQSLMFETSLVNGVDLSFAA 229 Query: 221 GSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 GS+SG A F G + GG F G+ + + A++ + + ++ P Sbjct: 230 GSASG--DKVAGGFNTSALGTALSTAGGSF---GIFNGNVLALSIQAVKNDSNSKVISTP 284 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTVLSPGR 327 + SGQ+ + S GQ++ TG ++ D GV L TP V+ G+ Sbjct: 285 RILTQSGQTG-YISVGQNVPFVTGKVTGEAANVNNPFQTIERRDVGVSLKVTPVVMGNGQ 343 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L I T+ + A D+ + + R TTV++ G T++L GL+ + +P Sbjct: 344 LVLTIDTKADSLTSQMTASDIITNQ-RHMQTTVQIKDGQTLLLGGLIDSNTTDGNRSVPW 402 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P++G LFR+ + E +F+ T ++K Sbjct: 403 FESVPVIGWLFRSHSDSHNERTMFVLLTAHVIK 435 >gi|330972847|gb|EGH72913.1| general secretion pathway protein D [Pseudomonas syringae pv. aceris str. M302273PT] Length = 775 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSS-TGATSVT 308 + + L ALE + L+ P+L ++ Q A G Q T SS+ T +SV Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNSSTDTTLSSVE 630 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS G +A P R T V SG Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTDTTGNDANGNPRISTRSVATQVAAQSG 690 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ Sbjct: 691 QTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKNRTELIVLITPRVI 744 >gi|313199856|ref|YP_004038514.1| pilus (msha type) biogenesis protein mshl [Methylovorus sp. MP688] gi|312439172|gb|ADQ83278.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. MP688] Length = 603 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 24/185 (12%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGAT---SVTTH 310 L L++ + L+ P L ++ Q+A +Y T+ S +TG+T SVTT Sbjct: 389 LRLLQQFGNTKVLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGLTTGSTNLQSVTTT 448 Query: 311 D----YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRK 355 GVV+ TP + G++ + ++ +S V VN + +P +VR+ Sbjct: 449 PNTVPVGVVMSVTPQINDLGQVNINVRPTISRVVSYVNDPNPQLANANVISRIPQIQVRE 508 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++ + + SG T VL GL++D+IQQ + +P +SKIP G LF +TE+ I Sbjct: 509 LESVLRVNSGNTAVLGGLMQDNIQQASDRVPEVSKIPFFGKLFTARSDFTIKTELVIFLR 568 Query: 416 PFLVK 420 P +++ Sbjct: 569 PIVIQ 573 >gi|238897480|ref|YP_002923157.1| putative protein exporter, transport across outer membrane (General Secretory Pathway) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465235|gb|ACQ67009.1| putative protein exporter, transport across outer membrane (General Secretory Pathway) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 687 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 12/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310 ++ ++ A++ +++ L+ P++T + Q ASF G T S++ + V Sbjct: 458 WQALVQAVKNDSSVNVLSTPSITTLDNQEASFMVGEDVPVLTGSAANANNTNPFNTVERR 517 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 GV+L TP + + L I+ EVS+ + G D+ + RK TTV G IVL Sbjct: 518 KIGVMLKVTPQINEGNTVQLLIEQEVSK-IQGETKLDI-KFAERKLKTTVLADDGQLIVL 575 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GLL ++ + +P+L IPILG LF+++ + + + I ++P +RD Sbjct: 576 GGLLDEESGESVSKVPVLGDIPILGHLFKSTVNKKTKRNLMI-----FIRPTILRD 626 >gi|332994686|gb|AEF04741.1| putative type IV pilus biogenesis protein PilQ [Alteromonas sp. SN2] Length = 586 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 5/181 (2%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + ++D + L ALE +A P +T + Q A G + Y +SS GA Sbjct: 407 FQIASLVDGTILDLELSALESENKGEIIASPRITVANQQEAYIEQGTEIPYVQATSS-GA 465 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSV + L TP + RI L + + + + GD + ++ T V + Sbjct: 466 TSVEFKKAVLSLRVTPQITPDNRIILDLVVTQDTRGETVSTSTGDAVAIDTQEIKTQVLV 525 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV--K 420 +G TIVL G+ + +PL +P LG LFRN+ +E+ E+ I TP ++ K Sbjct: 526 ENGETIVLGGIFQQTSTDSVSKVPLFGDLPFLGVLFRNTSEFQEKRELLIFVTPKIITEK 585 Query: 421 P 421 P Sbjct: 586 P 586 >gi|121593092|ref|YP_984988.1| general secretion pathway protein D [Acidovorax sp. JS42] gi|120605172|gb|ABM40912.1| general secretion pathway protein D [Acidovorax sp. JS42] Length = 781 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 8/152 (5%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 I G + F +G Y S GA T+V D G++L P + G + L + E Sbjct: 552 IIGNNVPFVTGS---YANTGGSGGAVNPFTTVERKDVGLMLRVRPQINENGTVKLTMYQE 608 Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VS+ ++ + PS R ++TV + G IV+ GLL+D+ ++ +P++ +P++ Sbjct: 609 VSKVAESTLSNANGPSTSKRSIESTVLVDDGSVIVIGGLLEDNYALGQDKVPVMGDLPVV 668 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 G LFRN + R++T + + P +++ A D Sbjct: 669 GGLFRNEKRTRQKTNLMVFLRPMVIRDSATSD 700 >gi|163781745|ref|ZP_02176745.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1] gi|159882965|gb|EDP76469.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1] Length = 663 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 75/271 (27%), Positives = 117/271 (43%), Gaps = 29/271 (10%) Query: 176 YANSSSKKVMNLLNIAGED----QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---- 227 YA S + + L I+G D QV + TI E L IG + I G G S Sbjct: 353 YATKSEYEGIRSL-ISGLDVRRKQVLIAATIVEASTKSLLDIGVRWQILGKRGGASFRGT 411 Query: 228 ------KSFAAD--FGGKFVSEGGDFSVKGVLDRFSFETVLHAL-ERATAIRTLAEPTLT 278 SFA+ G F G +V F +L +L E + ++ P + Sbjct: 412 SLSNIYSSFASGNFLMGVFSDVGRTVTVGDATFFFPDLVLLFSLLETGSGFNIISNPRVL 471 Query: 279 AISGQSASFTSGGQHLY-KTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQT 334 + Q A G Y + V + T+DY G+ L+ TP + S + L I Sbjct: 472 TLDNQPAIIKVGQVVPYAEGVKFDINGQPIITYDYKEVGLELNVTPRI-SGDNLRLTIGL 530 Query: 335 EVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + E + IG + +P R+ ++ V + +G T++L GL+ + EG+P L Sbjct: 531 NLEEIIDFVTNEIGATSYTVPVTSNREVNSDVVIENGQTVILGGLVSTKTLKTMEGVPGL 590 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 +IPILG LFR +++T +FI TP++V Sbjct: 591 WRIPILGRLFRRDVKQKDKTTLFIFITPYVV 621 >gi|182413440|ref|YP_001818506.1| type II and III secretion system protein [Opitutus terrae PB90-1] gi|177840654|gb|ACB74906.1| type II and III secretion system protein [Opitutus terrae PB90-1] Length = 673 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 107/250 (42%), Gaps = 27/250 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 QV ++V IAEV D + G + GSS G + +F GK G D S + Sbjct: 392 QVRIEVIIAEVTLDDSNKTGLSALNLTVATPQGSSQG---THITNFAGKVA--GWDIS-Q 445 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSSTG 303 GV++ +F+ L + ++ L+ PT+ + A G +Y T ST Sbjct: 446 GVVNPLAFQAALGDAGTRSNVKILSAPTIVTTHNKEAQILVGESLPIITGIYTTAVGSTT 505 Query: 304 AT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV 353 T VT D + L TP + G I L+I +V + V I +N D P Sbjct: 506 PTEPGFAQNQQVTYKDIAIDLKVTPLIGDDGSIQLKIDQKVDDVVRTISINNSDQPVIGR 565 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+A + + + G +VL GL + + + + L +IPIL LF + TE+ + Sbjct: 566 RQATSFINVSDGQIVVLGGLQRTANTRGRNKLGFLVEIPILSHLFGARTNSVRRTELLLF 625 Query: 414 ATPFLVKPVA 423 P ++ P A Sbjct: 626 IRPHVIAPDA 635 >gi|152989153|ref|YP_001346800.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] gi|150964311|gb|ABR86336.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] Length = 634 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 5/148 (3%) Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV- 340 GQ+ F +G + + +S T+V D G+ L TP + + L+++ E SE Sbjct: 440 GQNVPFQTG-SYTTDSAGASNPFTTVERKDVGITLKVTPHINEGDTLRLKVEQESSELAS 498 Query: 341 --IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G++ D+ + + R +T+ G IV+ GL+KD+++ +PLL IP+LG LF Sbjct: 499 APAGISTSDVITNK-RSVKSTILADDGQIIVIGGLIKDNVKTQVSKVPLLGSIPLLGRLF 557 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRD 426 R+++ E+T + + P L++ A D Sbjct: 558 RSTKDVNEKTNLMVFLRPTLLRNTANAD 585 >gi|114564903|ref|YP_752417.1| pilus (MSHA type) biogenesis protein MshL [Shewanella frigidimarina NCIMB 400] gi|114336196|gb|ABI73578.1| pilus (MSHA type) biogenesis protein MshL [Shewanella frigidimarina NCIMB 400] Length = 556 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 125/279 (44%), Gaps = 29/279 (10%) Query: 182 KKVMNLLNIAG---EDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGK 237 +++ + L IA + QV L+ I EV Q G Q ++ G + + F+ G+ Sbjct: 270 RQIRSFLQIAESHLQRQVILEAKIIEVTLSDGYQQGIQWENVLGHAGSTNIDFSTS-AGQ 328 Query: 238 FVSEGGDFSVKGVLD-RFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +S ++ GV F+ F T+++ L+ + L+ P +TA + Q A G Sbjct: 329 GLSNAITSAIGGVTSINFTGSDFSTIINLLDTQGDVDVLSSPRVTASNNQKAVIKVGNDE 388 Query: 294 LYKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ-------TEV 336 + T SST G T VTT G+ L TP + G + L + ++ Sbjct: 389 YFVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDEYGNVILHVHPSVIDVTSQT 448 Query: 337 SEPVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 E I + ++P +R++DT + SG +V+ GL+K + + +PLL IP L Sbjct: 449 KEIKISDSTLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENIETVSKVPLLGDIPFL 508 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD-LSRPDD 432 G F + ++++TE+ I P +V +D L R D Sbjct: 509 GEAFTSRTKSKKKTELIIMLKPTVVGGDTWKDELKRSQD 547 >gi|119503108|ref|ZP_01625193.1| general secretory pathway protein D precursor [marine gamma proteobacterium HTCC2080] gi|119461454|gb|EAW42544.1| general secretory pathway protein D precursor [marine gamma proteobacterium HTCC2080] Length = 743 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 107/234 (45%), Gaps = 13/234 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-FAADFGGKFVSEGGDFSV----KG 249 QV ++ +I EV + + G + + G S A G+F G + V KG Sbjct: 483 QVLIEASIVEVSLNDQLKYGLEWTFNNQIGGSDYSGIGAISDGEFNVAGAEGPVAQLLKG 542 Query: 250 VLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 L F + VL+AL + + ++ P++ + A+ G Q + S+ T Sbjct: 543 QLCSFKWCDYVAVLNALATESLVNVISTPSVMVLDNNVATINVGDQVPINSGSTITNGGN 602 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 +++ D GV L P+V + G + L + V++ V ++ + R ++ V + Sbjct: 603 TIQNISYKDTGVQLTVRPSVNAGGLVTLDVLQTVTD-VGNIDVTGNRRFLERSIESRVAV 661 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 SG ++VL GL++++ + G+P K PI+G LF + R+ TE+ + TP Sbjct: 662 RSGESVVLGGLIRENAANNENGVPWFYKAPIIGPLFGTTEKKRDRTELLVIITP 715 >gi|45657443|ref|YP_001529.1| general secretory pathway protein D [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294828092|ref|NP_712556.2| type II secretory pathway component protein D [Leptospira interrogans serovar Lai str. 56601] gi|45600682|gb|AAS70166.1| general secretory pathway protein D [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293385940|gb|AAN49574.2| type II secretory pathway component protein D [Leptospira interrogans serovar Lai str. 56601] Length = 596 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 19/256 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ +L+ + QV L+V I E+ L G G + G S + S Sbjct: 303 RKIIKVLD-SARKQVLLEVLIVELTSSDLNDFGIDWRYKGEAFGQFNSGLSKEANIINSN 361 Query: 242 GGDFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G L FS +L A + L+ P + + Q A + G Sbjct: 362 GQVNPNINTLSGFSLGFLKAGSEQIIGILSANQGNENFNVLSAPQVLTVDNQEAEISVGQ 421 Query: 292 QHLYKTVSSSTG-----ATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +T S + G A +V ++Y G+ L FTP V +I L + E+ Sbjct: 422 DVPVRTQSRNAGTGGTNAVTVDNYEYRPTGIKLKFTPHVNKNNKITLELFQEIKNIAEIA 481 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 AG P++ R+ T++ + + +IV+ GL+ +D Q+ IP L IP LG LF+ + Sbjct: 482 LAGGNPTFNRREIKTSISIENTQSIVIGGLISNDKQKRIIKIPFLGDIPYLGHLFKRTTE 541 Query: 404 NREETEIFIAATPFLV 419 ++T + + TP ++ Sbjct: 542 KIKKTNLMVFITPHIL 557 >gi|149911345|ref|ZP_01899965.1| putative type II secretory pathway, component EpsD [Moritella sp. PE36] gi|149805585|gb|EDM65588.1| putative type II secretory pathway, component EpsD [Moritella sp. PE36] Length = 699 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 9/168 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 SF ++ A + LA P++ + Q ASF G + T SS++ +V Sbjct: 446 SFGAIIQASANDSNSNILATPSIMTLDNQEASFIVGEEVPVITGSSASSGNDNPFQTVER 505 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + G+ L TP + + L I+ EVS+ V+G + D+ ++ R+ +TT+ SG T+V Sbjct: 506 REVGIKLTVTPQINEGDAVQLTIEQEVSQ-VLGSTSVDV-TFAKRQVNTTILADSGQTVV 563 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAAT 415 + GLL + + + +P L IP +G LF+ +S + IFI AT Sbjct: 564 IGGLLDEQVIESVSKVPWLGDIPWIGNLFKSTSSSTKKRNLMIFIKAT 611 >gi|239996578|ref|ZP_04717102.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonas macleodii ATCC 27126] Length = 590 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/261 (24%), Positives = 117/261 (44%), Gaps = 24/261 (9%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---------HSITGSSSG------ 225 ++K +N L+I + QV ++ + V D+ +Q+G + + ++GS G Sbjct: 328 ARKTINALDIPVK-QVLIESRMVTVLDDVDEQLGVRWGFSDRQDDNGVSGSLEGADTIAG 386 Query: 226 ---PSKSFAADFGGKFVSEGGD--FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 PS + S G F + ++D + L ALE +A P +T + Sbjct: 387 GIVPSIDNRLNVNLPVTSAAGSIGFQIASLVDGTILDLELSALESENKGEIIASPRIT-V 445 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSE 338 + Q ++ G + ++S+GATSV + L TP + RI L + + Sbjct: 446 ANQHEAYIEQGTEIPYVQATSSGATSVEFKKAVLSLKVTPHITPDNRIILDLVVTQDTRG 505 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + + G+ + ++ T V + +G TIVL G+ + +PL +P++GALF Sbjct: 506 ETVSTSTGEAVAIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGDLPVVGALF 565 Query: 399 RNSRFNREETEIFIAATPFLV 419 RNS +++ E+ I TP +V Sbjct: 566 RNSSQLQQKRELLIFVTPKIV 586 >gi|254251012|ref|ZP_04944330.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] gi|124893621|gb|EAY67501.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] Length = 780 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 272 LAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHD---YGVVLHFTPTVL 323 L+ P L + + A G L Y ++S T + + T+D G+ LH P + Sbjct: 515 LSTPNLITLDNEEAKIVVGQNVLIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQIT 574 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G + L++ TE S V + P++ R +T+ +G IVL GL++D+ Q Sbjct: 575 DGGILKLQLYTEDSAVVPSTTSSQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSN 634 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP +G LFR+ R++T + + P ++ Sbjct: 635 SKVPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 671 >gi|11559475|dbj|BAB18788.1| GspD [Burkholderia cepacia] Length = 783 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 12/153 (7%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336 + GQ+ +G Y ++S T + + T+D G+ LH P + G + L++ TE Sbjct: 535 VVGQNVPIATGS---YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTED 591 Query: 337 SEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S V G N+ P++ R +T+ +G IVL GL++D+ Q +PLL IP +G Sbjct: 592 SAVVNGTTNSQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 651 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 LFR+ R +T + + ++PV + D S Sbjct: 652 QLFRSESKVRAKTNLMV-----FLRPVIISDRS 679 >gi|253997792|ref|YP_003049855.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. SIP3-4] gi|253984471|gb|ACT49328.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. SIP3-4] Length = 604 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 24/185 (12%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGAT---SVTTH 310 L L++ + L+ P L ++ Q+A +Y T+ S +TG+T SVTT Sbjct: 390 LRLLQQFGNTKVLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGLTTGSTNLQSVTTT 449 Query: 311 D----YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRK 355 GVV+ TP + G++ + ++ +S V VN + +P +VR+ Sbjct: 450 PNTVPVGVVMSVTPQINDLGQVNINVRPTISRVVSYVNDPNPQLANANVISRIPQIQVRE 509 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++ + + SG T VL GL++D+IQQ + +P +SKIP G LF +TE+ I Sbjct: 510 LESVLRVNSGNTAVLGGLMQDNIQQASDRVPEVSKIPFFGKLFTARSDFTIKTELVIFLR 569 Query: 416 PFLVK 420 P +++ Sbjct: 570 PIVIQ 574 >gi|307132897|ref|YP_003884913.1| putative fimbrial transporter [Dickeya dadantii 3937] gi|306530426|gb|ADN00357.1| predicted fimbrial transporter [Dickeya dadantii 3937] Length = 417 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + +A P L Q+AS G + Y+ S ++G+TS+ + + + T Sbjct: 246 LMALEQENEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 305 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P +L G+I L + + P + G ++ + ++ T V + G TIVL G+ + Sbjct: 306 PRILHGGQITLNLLISQNMPGRAIKQGEGSEILAIDKQEIQTQVTVLDGETIVLGGIFQQ 365 Query: 377 DIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAATPFLVK 420 Q + +P LS +P +G FR N + R E IFI TP L++ Sbjct: 366 QKNQGERQVPGLSALPGIGQWFRSGNQQHTRRELVIFI--TPTLIQ 409 >gi|292489895|ref|YP_003532785.1| protein transport protein hofQ [Erwinia amylovora CFBP1430] gi|291555332|emb|CBA23681.1| Protein transport protein hofQ precursor [Erwinia amylovora CFBP1430] gi|312174079|emb|CBX82332.1| Protein transport protein hofQ precursor [Erwinia amylovora ATCC BAA-2158] Length = 414 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 2/151 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G + Y+ + ++G+T++ + + + TP V S GRI L+ Sbjct: 262 IASPRLFTSHQQTASIKQGTEIPYEVSTGNSGSTTMEFKEAMLAMEVTPLVQSNGRILLK 321 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + P + +G+ + K DT V L G T+ L G+ + +P L Sbjct: 322 LHISQNVPGRNMRSGENEVLTIDKQEIDTQVMLKDGQTLALGGIFQQQSATGSTRVPWLG 381 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+LG+LFR+ ++ E+ I TP LV+ Sbjct: 382 DIPLLGSLFRHDVRQQKRRELVIFITPRLVR 412 >gi|292900933|ref|YP_003540302.1| protein transport protein [Erwinia amylovora ATCC 49946] gi|291200781|emb|CBJ47915.1| protein transport protein [Erwinia amylovora ATCC 49946] Length = 406 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 2/151 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G + Y+ + ++G+T++ + + + TP V S GRI L+ Sbjct: 254 IASPRLFTSHQQTASIKQGTEIPYEVSTGNSGSTTMEFKEAMLAMEVTPLVQSNGRILLK 313 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + P + +G+ + K DT V L G T+ L G+ + +P L Sbjct: 314 LHISQNVPGRNMRSGENEVLTIDKQEIDTQVMLKDGQTLALGGIFQQQSATGSTRVPWLG 373 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+LG+LFR+ ++ E+ I TP LV+ Sbjct: 374 DIPLLGSLFRHDVRQQKRRELVIFITPRLVR 404 >gi|197117937|ref|YP_002138364.1| type IV pilus secretin lipoprotein PilQ [Geobacter bemidjiensis Bem] gi|197087297|gb|ACH38568.1| type IV pilus secretin lipoprotein PilQ [Geobacter bemidjiensis Bem] Length = 946 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 21/259 (8%) Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR----RDILKQIGFQHSITGSSSGPSKSF 230 Q A + K ++ L+ A E QV ++ I E RD+ Q G + +S S Sbjct: 694 QTALNDMKALLKTLD-APEKQVMIEARIVEATSTFTRDLGVQWGLSYRDGSASVAGINSV 752 Query: 231 AADFGG----------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 FGG G S + + L A ++ ++ P + + Sbjct: 753 DTGFGGVVSAAGPGSSGAGGLGLGMSFGKLTSNIKLDMRLAAAATIGQVKIISTPKVVTL 812 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + ++A + G Y+T S+ T + + L TP + + G + ++I+ + P Sbjct: 813 NNKAAKISQGQSIPYQTTSAEGTKTEFV--EAALTLEVTPHITADGSVSMKIKASNNSP- 869 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G P ++A T + + +G T V+ G+ D + G+P LS IP+LG LF++ Sbjct: 870 ---GTGSPPPINKKEATTELVVSNGDTTVIGGIYVDSDTESDTGVPFLSDIPLLGWLFKS 926 Query: 401 SRFNREETEIFIAATPFLV 419 + + +TE+ I TP +V Sbjct: 927 NSKQKTKTELLIFITPKIV 945 >gi|34496284|ref|NP_900499.1| type 4 fimbrial biogenesis protein PilQ [Chromobacterium violaceum ATCC 12472] gi|34102137|gb|AAQ58504.1| type 4 fimbrial biogenesis protein PilQ [Chromobacterium violaceum ATCC 12472] Length = 697 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 1/160 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A++ R ++ P + Q AS G + Y+ SSS GATSV+ + L+ Sbjct: 531 LQAMQAEDKGRIISSPRVMTADRQEASIEQGTEIPYQEASSS-GATSVSFKKAVLRLNVK 589 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + + I PS K T V + +GGT+VL G+ + + Sbjct: 590 PQITPDNHVIMDITVNKDSANFEKTVNGTPSLSTEKIITQVLVENGGTVVLGGIYQQQLN 649 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P L IP+LGALFR+S+ + +E+ I TP ++ Sbjct: 650 DVINKVPFLGDIPLLGALFRSSQKIDKRSELLIFITPKVI 689 >gi|57242551|ref|ZP_00370489.1| general secretory pathway protein D [Campylobacter upsaliensis RM3195] gi|57016836|gb|EAL53619.1| general secretory pathway protein D [Campylobacter upsaliensis RM3195] Length = 468 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 24/201 (11%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+ +F +VL+ L + + L+ P L A++ Q A + G Y+ SS G + T Sbjct: 264 GLRANINFNSVLNFLSQNGKTQVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 323 Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------ 353 T +Y G++L P + +I LRI +S+ + S R Sbjct: 324 TVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPRTIAPDTI 383 Query: 354 -RKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALFRNSRFNREETEI 410 +K T V + + T++L GL+ + Q+KE + LSKIP+LG LF + TEI Sbjct: 384 QKKLSTVVSMENNQTLILGGLISHN--QIKEASEVSFLSKIPLLGLLFSGDETSSNSTEI 441 Query: 411 FIAATPFLVKP----VAMRDL 427 TP +V ++++DL Sbjct: 442 VFIITPSIVDKQMGVLSLKDL 462 >gi|167625758|ref|YP_001676052.1| pilus (MSHA type) biogenesis protein MshL [Shewanella halifaxensis HAW-EB4] gi|167355780|gb|ABZ78393.1| pilus (MSHA type) biogenesis protein MshL [Shewanella halifaxensis HAW-EB4] Length = 557 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 21/197 (10%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSS 300 GG S+K L+ F T++ L+ + L+ P +TA + Q A G + T VSS Sbjct: 339 GGVTSIK--LEGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTNVSS 396 Query: 301 STGA--TSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAG 346 +T A T +TT D G+ L TP + G + L I V + +I ++ Sbjct: 397 TTVASNTPITTPDVELTPFFSGIALDVTPQIDEQGNVLLHIHPSVIDIKEQTKIIKISGS 456 Query: 347 --DMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++P +R++DT ++ SG +V+ GL+K + ++ +PLL IP LG F N Sbjct: 457 TLELPLAQSEIRESDTVIKAASGDVVVIGGLMKSENTEIVSKVPLLGDIPFLGEAFTNRA 516 Query: 403 FNREETEIFIAATPFLV 419 + +TE+ I P +V Sbjct: 517 NSTVKTELVILLKPIVV 533 >gi|121607671|ref|YP_995478.1| general secretion pathway protein D [Verminephrobacter eiseniae EF01-2] gi|121552311|gb|ABM56460.1| general secretion pathway protein D [Verminephrobacter eiseniae EF01-2] Length = 720 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 131/294 (44%), Gaps = 32/294 (10%) Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 V G +R + D EL+ + L S R +YA S + L++ QV ++ +I E Sbjct: 407 VAALGNIRVMAD-----ELNNSVLVWSTRAEYAKIES--TLRRLDLP-PTQVLIEASIIE 458 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVLDR---FSF---- 256 V + + G Q + S SG D G G S G + + FS+ Sbjct: 459 VTLNDDLRYGLQWAFNDSRSG------IDRGQGALSSRDGTSTGGILGGALAGFSYALKS 512 Query: 257 -----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-- 309 +L+ L T ++ +A P+L + +AS G Q + ++S +VT+ Sbjct: 513 PAGAVRAMLNVLSAKTTVKVVASPSLMVLDNHTASIAVGDQTPIQAGTTSNLEGTVTSTN 572 Query: 310 ---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 D GV L TP+V + + ++I V++ + ++ R+ + V + SG Sbjct: 573 IEYKDTGVNLVVTPSVNAGNIVTMQIDQSVTDVGAKDEVTNQRAFLQRQLSSKVSVRSGE 632 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +IV+ GL+++ K GIP+L +P+ G LF + + TE+ + TP +V+ Sbjct: 633 SIVMGGLIQESSSSTKSGIPVLHALPLFGNLFGTTVNDGRRTELLVIITPRVVR 686 >gi|116051101|ref|YP_790068.1| general secretion pathway protein D [Pseudomonas aeruginosa UCBPP-PA14] gi|115586322|gb|ABJ12337.1| general secretion pathway protein D [Pseudomonas aeruginosa UCBPP-PA14] Length = 658 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 29/254 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242 QV ++ I E+ DI +G Q +I G +K+ A+ G K Sbjct: 360 QVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSIGTLLQSLESNKAPESI 419 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D ++ G+ SF ++ AL T L+ P+L + Q A G ++T S +T Sbjct: 420 PDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 478 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYR 352 + T+V D GV L TP + + L I+ E+S + N D+ + + Sbjct: 479 NSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISALLPNAQQRNNTDLITSK 538 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +T+ +G IV+ GL++DD+ Q + +PLL IP LG LFR+++ + + + Sbjct: 539 -RSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFLGRLFRSTKDTHTKRNLMV 597 Query: 413 AATPFLVKPVAMRD 426 ++P +RD Sbjct: 598 -----FLRPTVVRD 606 >gi|262373971|ref|ZP_06067248.1| general secretion pathway protein D [Acinetobacter junii SH205] gi|262310982|gb|EEY92069.1| general secretion pathway protein D [Acinetobacter junii SH205] Length = 751 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 107/256 (41%), Gaps = 33/256 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------PSKSFAADFGGKFVSEG 242 QV ++ I EV D Q+G Q ++ SSG SK A G G Sbjct: 391 QVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLINFTNVGSSLSKLAAGYLTGGAAGLG 450 Query: 243 -----------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 GD+ R + ++ AL+ T L+ P++ + + A G Sbjct: 451 SAIGAGSSIVVGDYKEGANGSRKLYGALIQALKSNTKSNLLSTPSIVTMDNEEAYIVVGQ 510 Query: 292 QHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGV 343 + T S +T +T V + D GV L P + G + L ++ EVS + G Sbjct: 511 NVPFVTGSVTTNSTGVNPYTTVERKDVGVTLKVVPHIGEGGSVRLEVEQEVSAVQESRG- 569 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 A D+ + + R T+V G T+VL GL+ D+ ++G+P+L IP LG LFR Sbjct: 570 QATDLVTSK-RAIKTSVLADHGQTVVLGGLISDNSIHSRQGLPVLGDIPYLGRLFRADSK 628 Query: 404 NREETEIFIAATPFLV 419 E+ + + P +V Sbjct: 629 TNEKRNLLVFIHPTIV 644 >gi|238788960|ref|ZP_04632750.1| Protein transporter HofQ [Yersinia frederiksenii ATCC 33641] gi|238722987|gb|EEQ14637.1| Protein transporter HofQ [Yersinia frederiksenii ATCC 33641] Length = 376 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 6/152 (3%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G Y GAT++ + + + TP +L G+I L Sbjct: 225 IASPRLVTSHQQTASIKQGSDIPYTVSGGKKGATTIEFKEAVLGMEVTPKILRNGKITLN 284 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P + + GD + + K + T + + G TIVL G+ + Q +P+L Sbjct: 285 LKISQNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETIVLGGIFQQKSSQGVNKVPILG 344 Query: 390 KIPILGALFRN--SRFNREETEIFIAATPFLV 419 IP LG LF+ + NR E IFI TP L+ Sbjct: 345 DIPWLGGLFKQDTQQQNRRELVIFI--TPRLI 374 >gi|302383551|ref|YP_003819374.1| general secretion pathway protein D [Brevundimonas subvibrioides ATCC 15264] gi|302194179|gb|ADL01751.1| general secretion pathway protein D [Brevundimonas subvibrioides ATCC 15264] Length = 688 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 29/251 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS------SGPS-KSFAADFG----------GK 237 QV ++V I E+ ++ +QIG Q + G+ G S + +D G G+ Sbjct: 396 QVKIEVAIVEITGELGEQIGVQLGLGGAVPDDGVIGGTSFSNGGSDLGTVLSALGYPAGR 455 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + +G + F +L AL +A L+ P++T + Q A G ++T Sbjct: 456 LLGQGLSLAAG---SEGEFGLLLQALGTNSAANLLSSPSVTVLDNQPAEIVVGQNVPFRT 512 Query: 298 VSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMP 349 S +T T+++ D G+ L P V + L + EVS V A D+ Sbjct: 513 GSFATDGNSTNPFTTISREDVGLTLRVIPRVHEGDVVKLDVSQEVSSLVTTNITGAADLI 572 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + R R T+V G TIVL GL+ DD +P LS +P++G FR+ R ++ Sbjct: 573 TNR-RSIQTSVLANDGETIVLGGLVTDDRMSNNSRVPGLSSLPVVGNAFRSRRDSQTRRT 631 Query: 410 IFIAATPFLVK 420 +FI P +++ Sbjct: 632 LFIFLKPTILR 642 >gi|288942699|ref|YP_003444939.1| general secretion pathway protein D [Allochromatium vinosum DSM 180] gi|288898071|gb|ADC63907.1| general secretion pathway protein D [Allochromatium vinosum DSM 180] Length = 733 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 33/248 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ TI E+ + G Q + G + KSFA+ G F D G+ F Sbjct: 472 QVLVEATIVEITLSGSLKYGVQWELFGPGAD-GKSFAS-LDGTF----DDAETSGIGTMF 525 Query: 255 ------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + + L AL + L+ P++ + Q+A G + + S Sbjct: 526 PGFNWAMVSNPDTIKATLSALAGDNLLNVLSSPSVMVMDNQTAKIQVG-REVPIATSKQD 584 Query: 303 GATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSY 351 G ++ ++ D GV+L P V G + L I+ EVS E G+N+ PS+ Sbjct: 585 GTSTTDRTYTTISYKDTGVILTVKPRVTPGGLVQLEIEQEVSTVFEENASGLNS---PSF 641 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R ++V + S +VL GL++D K+GIP L +P++G LF + + TE+ Sbjct: 642 KKRTITSSVAVRSNQAVVLGGLIEDTRSDGKQGIPGLYSLPVVGGLFGETSKSSTRTELV 701 Query: 412 IAATPFLV 419 + TP ++ Sbjct: 702 VVLTPKVI 709 >gi|206561863|ref|YP_002232628.1| type II secretion system protein D [Burkholderia cenocepacia J2315] gi|198037905|emb|CAR53850.1| type II secretion system protein D [Burkholderia cenocepacia J2315] Length = 777 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 16/191 (8%) Query: 245 FSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 F V+G+ L FS + + L I TL + GQ+ +G Y ++S Sbjct: 492 FGVQGLGALLQYFSGVSDANVLSTPNLI-TLDNEEAKIVVGQNVPIATGS---YSNLTSG 547 Query: 302 TGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKAD 357 T + + T+D G+ LH P + G + L++ TE S V G + P++ R Sbjct: 548 TTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTSAQTGPTFTKRSIQ 607 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 +T+ +G IVL GL++D+ +PLL IP +G LFR+ R++T + + Sbjct: 608 STILADNGEIIVLGGLMQDNYAVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMV----- 662 Query: 418 LVKPVAMRDLS 428 ++PV + D S Sbjct: 663 FLRPVIISDRS 673 >gi|153870600|ref|ZP_01999967.1| MSHA biogenesis protein MshL [Beggiatoa sp. PS] gi|152072935|gb|EDN70034.1| MSHA biogenesis protein MshL [Beggiatoa sp. PS] Length = 494 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 26/245 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGF-QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + QV ++ TIAEV+ + Q G I G + + G G +V L Sbjct: 249 QRQVLIEATIAEVQLNDQYQAGIDWQRIDGDFNYTQALTGGNLGNAPFYSFGYSNVASRL 308 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------- 304 S + LE+ +++ L+ P + A++ Q+A +Y T Sbjct: 309 GNIS--ATVRLLEQFGSVKVLSSPKIMALNNQTAILKVVDNIIYFTTEVEITETDTRTRE 366 Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGV--NAGDMPS 350 T + T G+V+ TP + + L I+ +S P + +P Sbjct: 367 TFETEINTVPVGLVMSVTPQISENNVVMLNIRPTISRIINFKVDPNPALAAAGTVNQIPE 426 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREET 408 +VR+ +T +++ G V+ GL++D Q+K+G+P+LS++P++G F R+ ++ + E Sbjct: 427 IQVREIETILKINHGDIGVIGGLMQDTTNQIKKGVPVLSQLPLVGDFFSYRDDQYEKTEL 486 Query: 409 EIFIA 413 IF A Sbjct: 487 VIFYA 491 >gi|313501056|gb|ADR62422.1| PilQ [Pseudomonas putida BIRD-1] Length = 384 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 7/225 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I E D K +G + + G P K D G G + + Sbjct: 152 QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLG--LERAGSSIGLGLLRG 209 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + L A+E++ +++P + ++A G + Y+ S S GATSV+ + Sbjct: 210 DVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQS-GATSVSFREA 268 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371 + L TP + ++ + ++ EP VNA ++P R + + V + G TIV+ Sbjct: 269 SLSLEVTPQITPDNKVIMTVRVTKDEPDY-VNALNNVPPIRKNEVNAKVRVADGETIVIG 327 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 G+ + + +P +P +G LFR +++E+ + TP Sbjct: 328 GVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 372 >gi|1019923|gb|AAA79322.1| S-protein secretion D [Aeromonas hydrophila] Length = 737 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 9/157 (5%) Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSP 325 + P L SG+ A G + T +S + +V GV+L PTV + Sbjct: 537 SSPKLMVRSGEEARIEVGNEIPVVTGTSQSTDNPDAPINKTVQYRKTGVILTIKPTVQAS 596 Query: 326 GRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G + L I E+SE + D P+ RK +T + L GG+++LAGL+ + Sbjct: 597 GVVDLTISQELSEQADTSTSTDALSPTIMNRKVNTALTLRDGGSVMLAGLISSTKGEGDT 656 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G+PLL IP +G+LF++ ++ TE+ + P++++ Sbjct: 657 GVPLLGDIPWIGSLFKSKSNSQNRTELVVMIIPYVLR 693 >gi|170728738|ref|YP_001762764.1| pilus (MSHA type) biogenesis protein MshL [Shewanella woodyi ATCC 51908] gi|169814085|gb|ACA88669.1| pilus (MSHA type) biogenesis protein MshL [Shewanella woodyi ATCC 51908] Length = 562 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 28/275 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250 QV L+ I EV Q G + ++ G SF G +S+ ++ GV Sbjct: 285 QVILEAKILEVTLSDGYQQGIEWQNVLGHVGDTDISFGTSPSGSGLSDSITSAIGGVTSM 344 Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATS 306 + F T+++ L+ + L+ P +TA + Q A G + T SST G T Sbjct: 345 KISGADFTTMINLLDTQGDVDVLSSPRVTATNNQKAVIKVGKDEYFVTDVSSTTVAGTTP 404 Query: 307 VTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDM----PS 350 VT+ + G+ L TP + G I L I V I ++ ++ Sbjct: 405 VTSPEVELTPFFSGIALDVTPQIDGEGNILLHIHPSVINIKEQTKTIKISGSELELPLAQ 464 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++DT ++ +G +V+ GL+K + L +PLL IP++G LF N + ++TE+ Sbjct: 465 SDIRESDTVIKAKTGEVVVIGGLMKSENIDLVSKVPLLGDIPLVGELFTNRSKSLQKTEL 524 Query: 411 FIAATPFLVKPVAMR-DLSRPD---DHYSVEDDAK 441 + P +V+ + +L R D + ED+ + Sbjct: 525 VLLLKPTVVEADTWKQELKRSKELLDRWYPEDEQE 559 >gi|313108415|ref|ZP_07794431.1| general secretion pathway protein D [Pseudomonas aeruginosa 39016] gi|310880933|gb|EFQ39527.1| general secretion pathway protein D [Pseudomonas aeruginosa 39016] Length = 658 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 29/254 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242 QV ++ I E+ DI +G Q +I G +K+ A+ G K Sbjct: 360 QVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSIGTLLQSLESNKAPESI 419 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D ++ G+ SF ++ AL T L+ P+L + Q A G ++T S +T Sbjct: 420 PDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 478 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYR 352 + T+V D GV L TP + + L I+ E+S + N D+ + + Sbjct: 479 NSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISALLPNAQQRNNTDLITSK 538 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +T+ +G IV+ GL++DD+ Q + +PLL IP LG LFR+++ + + + Sbjct: 539 -RSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFLGRLFRSTKDTHTKRNLMV 597 Query: 413 AATPFLVKPVAMRD 426 ++P +RD Sbjct: 598 -----FLRPTVVRD 606 >gi|119773594|ref|YP_926334.1| MSHA biogenesis protein MshL [Shewanella amazonensis SB2B] gi|119766094|gb|ABL98664.1| MSHA biogenesis protein MshL [Shewanella amazonensis SB2B] Length = 561 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 28/252 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSS--SGPSK-SFAA----DFGGKFVSEGGDFS 246 QV L+ + EV Q G Q + I GS+ G +K +FA +FG + S G + Sbjct: 287 QVILEAKVLEVTLSDGYQQGIQWNKIAGSALADGNTKINFATSAGNEFGNQISSALGGVT 346 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---G 303 ++ F+ +++ L+ + L+ P +TA + Q A G + T SST G Sbjct: 347 SLSIIGS-DFDAMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGKDEYFVTDVSSTTVAG 405 Query: 304 ATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDM--- 348 T VT+ + G+ L TP + G + L + V + I ++ D+ Sbjct: 406 TTPVTSPEVELTPFFSGIALDVTPQIDGQGNVLLHVHPSVIDVKEQTKTIKISNSDLELP 465 Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +R++DT ++ SG +V+ GL+K + +L +PLL IP LG F N + + Sbjct: 466 LAQSEIRESDTVIKAMSGDVVVIGGLMKSESLELVSKVPLLGDIPFLGEAFTNRSQSVRK 525 Query: 408 TEIFIAATPFLV 419 TE+ I P +V Sbjct: 526 TELVILLKPTVV 537 >gi|325922191|ref|ZP_08183978.1| type II secretory pathway protein D [Xanthomonas gardneri ATCC 19865] gi|325547310|gb|EGD18377.1| type II secretory pathway protein D [Xanthomonas gardneri ATCC 19865] Length = 674 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 8/175 (4%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT------ 309 F ++ A++ T L+ P++ + + A G Q + T G +V Sbjct: 431 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGTANVNPFRTIQR 489 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTI 368 D GV L P + + G I L I+ EVS V+A + R+ +T V + +G + Sbjct: 490 QDVGVQLEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIV 549 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 L GLL + +Q E +PLL +P LGALFR+ NR++T + + P +++ A Sbjct: 550 ALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 604 >gi|188990167|ref|YP_001902177.1| exported type II protein secretion system protein D [Xanthomonas campestris pv. campestris str. B100] gi|167731927|emb|CAP50113.1| exported type II protein secretion system protein D [Xanthomonas campestris pv. campestris] Length = 690 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 12/177 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F ++ A++ T L+ P++ + + A G Q + T GA ++ Sbjct: 453 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNPFRTIQR 511 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGG 366 D GV L P + + G I L I+ EVS PV + ++ + R+ +T V + +G Sbjct: 512 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPV-STQSSEL-VFNKRQIETRVVVENGA 569 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + L GLL + +Q E +PLL +P LGALFR+ NR++T + + P +++ A Sbjct: 570 IVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 626 >gi|117620233|ref|YP_854918.1| msha biogenesis protein mshl [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561640|gb|ABK38588.1| msha biogenesis protein mshl [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 557 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 24/224 (10%) Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 ITG S + A F + GG K + +F ++ L+ + TL+ P +T Sbjct: 313 ITGGGSLTPSTIANTPNQIFSALGGGAGFK--ISDGNFNVAVNLLKTQGDVNTLSSPRVT 370 Query: 279 AISGQSASFTSGGQHLYKTVSSS------------TGATSVTTHDYGVVLHFTPTVLSPG 326 A + Q A G + T +S+ T +T G+ L TP + G Sbjct: 371 ATNNQKAVIKVGTDEYFVTNASTTTTTSGTSAPIVTPNVELTPFFSGIALDVTPQIDEEG 430 Query: 327 RIGLRIQ-----TEVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 ++ L I TE + I V D + +R++DT V+ +G IV+ GL+K Sbjct: 431 KVLLHIHPSVIDTEEQKKTIDVGTADPLILPLAKSSIRESDTVVQANNGDIIVIGGLMKT 490 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 D Q++ +PLL IP +G F N R + ++ E+ I P +V+ Sbjct: 491 DKQEIVSKVPLLGDIPWVGEAFTNRRESTKKVELVILLKPTVVE 534 >gi|21232854|ref|NP_638771.1| type II secretion system protein D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767075|ref|YP_241837.1| type II secretion system protein D [Xanthomonas campestris pv. campestris str. 8004] gi|21114682|gb|AAM42695.1| type II secretion system protein D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572407|gb|AAY47817.1| type II secretion system protein D [Xanthomonas campestris pv. campestris str. 8004] Length = 690 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 12/177 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F ++ A++ T L+ P++ + + A G Q + T GA ++ Sbjct: 453 FGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVG-QEVPITTGEVLGAANDNPFRTIQR 511 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGG 366 D GV L P + + G I L I+ EVS PV + ++ + R+ +T V + +G Sbjct: 512 QDVGVELEVRPQINTAGGITLAIKQEVSAIAGPV-STQSSEL-VFNKRQIETRVVVENGA 569 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + L GLL + +Q E +PLL +P LGALFR+ NR++T + + P +++ A Sbjct: 570 IVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 626 >gi|153003562|ref|YP_001377887.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. Fw109-5] gi|152027135|gb|ABS24903.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. Fw109-5] Length = 893 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 7/173 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F+ L ALE ++T++ P + I + A+ G + VS+S + T + Sbjct: 718 FNLNLRLSALENNGVVKTISAPKIATIDNREATIGQGISIPFSQVSAS--GVNTTFIEAK 775 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + L TP V + G I L+I+ ++P + G N PS R+A+T V + G T V+ Sbjct: 776 LELKVTPHVSADGSILLKIKATNNQPNPQLTGANG--QPSISKREAETEVLVKDGETTVI 833 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G+ +P L K+P+LG FRN + TE+ I TP ++ A Sbjct: 834 GGIYTRQTANRTSEVPFLGKLPLLGYFFRNMSEQDDHTELLIFITPRILNRAA 886 >gi|221202224|ref|ZP_03575259.1| general secretion pathway protein D [Burkholderia multivorans CGD2M] gi|221208715|ref|ZP_03581714.1| general secretion pathway protein D [Burkholderia multivorans CGD2] gi|221214336|ref|ZP_03587308.1| general secretion pathway protein D [Burkholderia multivorans CGD1] gi|221165991|gb|EED98465.1| general secretion pathway protein D [Burkholderia multivorans CGD1] gi|221171347|gb|EEE03795.1| general secretion pathway protein D [Burkholderia multivorans CGD2] gi|221178018|gb|EEE10430.1| general secretion pathway protein D [Burkholderia multivorans CGD2M] Length = 768 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 19/163 (11%) Query: 295 YKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPS 350 Y ++S T + + T+D G+ LH P + G + L++ TE S NA PS Sbjct: 537 YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNAQTGPS 596 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R +T+ +G IVL GL++D +PLL IP +G LFR+ R++T + Sbjct: 597 FTKRSIQSTILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNL 656 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 + ++PV + D D A+A NR + I G Sbjct: 657 MV-----FLRPVIIAD----------RDTAQAVTSNRYDYIQG 684 >gi|254282305|ref|ZP_04957273.1| general (Type II) secretion pathway (GSP) D protein [gamma proteobacterium NOR51-B] gi|219678508|gb|EED34857.1| general (Type II) secretion pathway (GSP) D protein [gamma proteobacterium NOR51-B] Length = 346 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 16/249 (6%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR- 253 QV ++ +I EV G + + G G + + G S G L R Sbjct: 81 QVMIEASIIEVTLTDELSYGLEWTFNGQLGGSEYNGVGTLSDGNFNLGSPDSPLGQLARG 140 Query: 254 FSFE---------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---TVSSS 301 FS+ VL AL + I ++ P++ + +A G Q + TVS+ Sbjct: 141 FSYSVTGGSGDIVAVLQALSTQSLINVISSPSVMVLDNNTAYIHVGDQVPIRSGSTVSNG 200 Query: 302 TGAT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T ++T D GV L P+V + G + L ++ V++ V ++ + R+ + V Sbjct: 201 GNVTENITYRDTGVKLSVRPSVNAGGLVTLDVEQSVTD-VGPIDVTGNRRFLEREIMSRV 259 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP-FLV 419 + SG ++VL GL++++ +EG+P L K+P++GALF + + TE+ + TP L Sbjct: 260 AVRSGESVVLGGLIRENATNSEEGVPWLHKVPLIGALFGTTDKSDTRTELVVMITPRALY 319 Query: 420 KPVAMRDLS 428 +R++S Sbjct: 320 NDAQLREVS 328 >gi|148550155|ref|YP_001270257.1| type IV pilus secretin PilQ [Pseudomonas putida F1] gi|148514213|gb|ABQ81073.1| type IV pilus secretin PilQ [Pseudomonas putida F1] Length = 420 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 7/225 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I E D K +G + + G P K D G G + + Sbjct: 188 QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLG--LERAGSSIGLGLLRG 245 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + L A+E++ +++P + ++A G + Y+ S S GATSV+ + Sbjct: 246 DVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQS-GATSVSFREA 304 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371 + L TP + ++ + ++ EP VNA ++P R + + V + G TIV+ Sbjct: 305 SLSLEVTPQITPDNKVIMTVRVTKDEPDY-VNALNNVPPIRKNEVNAKVRVADGETIVIG 363 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 G+ + + +P +P +G LFR +++E+ + TP Sbjct: 364 GVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 408 >gi|294341497|emb|CAZ89914.1| putative general secretion pathway protein [Thiomonas sp. 3As] Length = 884 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/260 (23%), Positives = 113/260 (43%), Gaps = 27/260 (10%) Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV-KGVLDRFSFETVLHALERATAIRT 271 I Q +I+G S + + A+ G + G + + V + + + L+ Sbjct: 486 INLQAAISGGGSSAATALAS--GSLAIPNGLNIGILHNVAGMATLGLLANFLQTQDGANI 543 Query: 272 LAEPTLTAIS--------GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 L+ P L + GQ+ F +G + ++ T ++ D G+ L P + Sbjct: 544 LSAPNLMTLDNEEAKIVVGQNVPFVTGQYAQTGSSATVTPFQTIERKDVGLTLKVRPQIT 603 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + G I + + EVS NA + + + R T V + G TIVL GL++D++ Q Sbjct: 604 AGGAIKMDVYQEVSSISSTTNAAGIITNK-RSIQTAVLVNDGQTIVLGGLMQDNVSQNNS 662 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 IP L IP LGALFR++ ++T++ + ++P+ +R ED A Sbjct: 663 KIPGLGDIPGLGALFRSNSRTAQKTDLMV-----FLRPIVVR----------TEDQGNAL 707 Query: 444 FFNRVNKIYGPKEASEVEGQ 463 R + + G ++ +++ Q Sbjct: 708 SQQRYDTMRGMQDRAQLPAQ 727 >gi|313682348|ref|YP_004060086.1| type ii and iii secretion system protein [Sulfuricurvum kujiense DSM 16994] gi|313155208|gb|ADR33886.1| type II and III secretion system protein [Sulfuricurvum kujiense DSM 16994] Length = 535 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/285 (22%), Positives = 124/285 (43%), Gaps = 30/285 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKFVSEGGDFSVKGVL 251 QV ++ I E+ K++G ++ ++G + G + F + G + D SV L Sbjct: 258 QVYVRAKIIEISEGKSKEVGIKYGLSGGTVGSNGVFTFNTMLGDGTAAAVALDPSVTTAL 317 Query: 252 DRFSFETV---------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 +F T+ + L A L+EP++ I +S G KT S S+ Sbjct: 318 -KFDIPTITSGIALGANIALLNTNGAAEILSEPSILCIDNLESSIYVG-----KTESISS 371 Query: 303 GAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 G T + T D G+ L P + + ++ L + ++ + N +PS Sbjct: 372 GVTQGVGTGITQNFTRQDIGLTLKIKPRLSNDNKVLLGVNAKLEDIDSNTNL-QLPSTTK 430 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+ T+ + +G T+++ GL+++ +P L IP+LG LFR+ ++ + I Sbjct: 431 REVITSAIVNNGETVIIGGLIREKTDHNDNRVPFLGDIPVLGHLFRDESSKTDKINLVIL 490 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 TP++++ DLS + D +A + +R+ + K+ S Sbjct: 491 LTPYIIEKSG--DLSSLRAQLNQLDAIQARYVDRITQSLESKKKS 533 >gi|26991756|ref|NP_747181.1| type IV pilus secretin PilQ [Pseudomonas putida KT2440] gi|24986864|gb|AAN70645.1|AE016708_6 type IV pili biogenesis protein PilQ [Pseudomonas putida KT2440] Length = 420 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 7/225 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I E D K +G + + G P K D G G + + Sbjct: 188 QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLG--LERAGSSIGLGLLRG 245 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + L A+E++ +++P + ++A G + Y+ S S GATSV+ + Sbjct: 246 DVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQS-GATSVSFREA 304 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371 + L TP + ++ + ++ EP VNA ++P R + + V + G TIV+ Sbjct: 305 SLSLEVTPQITPDNKVIMTVRVTKDEPDY-VNALNNVPPIRKNEVNAKVRVADGETIVIG 363 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 G+ + + +P +P +G LFR +++E+ + TP Sbjct: 364 GVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 408 >gi|37524117|ref|NP_927461.1| hypothetical protein plu0091 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783540|emb|CAE12386.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 344 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 14/181 (7%) Query: 251 LDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + RF+F E L ALE+ + +A P LTA Q AS G Y VS Sbjct: 164 MHRFAFNIARIHTSLLEMELSALEQENQLDIIASPRLTASHQQLASIKQGSDIPY--VSQ 221 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--T 358 ++V + + + TP +L +I L ++ + P I ++ G + + K + T Sbjct: 222 EKEKSTVQFKEAVLGMEVTPHILRKNKIRLSLKISQNMPGISISQGGGENLTIDKQEIIT 281 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + +G T++L G+ + + + +P LS IP+LG+LF E+ I TP L Sbjct: 282 QVTVKNGETLILGGIFQQKKGEQTQKVPYLSDIPLLGSLFNQKAHKHSRRELVIFITPQL 341 Query: 419 V 419 + Sbjct: 342 M 342 >gi|330446773|ref|ZP_08310424.1| pilus (MSHA type) biogenesis protein MshL [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490964|dbj|GAA04921.1| pilus (MSHA type) biogenesis protein MshL [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 539 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 117/265 (44%), Gaps = 46/265 (17%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADF----GGKFVSE--GGDFSV 247 QV L+ I EV D Q G S +T S +G + AA GG +S+ GG ++ Sbjct: 266 QVVLEAKIMEVTLDDSYQQGINWSYLTKSGNGITMGTAAIVDGLPGGNAISDLLGGQTNI 325 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSS--TGA 304 + +F V+ L + L+ P +TA + Q A GG + T VSSS +G Sbjct: 326 --TISDGNFNAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGD 383 Query: 305 TSVTTHDY---------------------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 + + D GV+LH P V+ +I+ ++P++ Sbjct: 384 NNTVSPDVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVQNEEKKIEVGTAKPMV-- 441 Query: 344 NAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +P + +R++D+ + +G +V+ GL+K I +PLL IP +G LFR Sbjct: 442 ----LPLAKSTIRESDSIIHARTGDVVVIGGLMKSTINDQVSKVPLLGDIPGVGNLFRQI 497 Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426 +++TE+ I L+KP + D Sbjct: 498 NKVKKKTELVI-----LLKPTVVTD 517 >gi|262370143|ref|ZP_06063470.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262315182|gb|EEY96222.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 785 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 111/258 (43%), Gaps = 36/258 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------KSFAADFGGKFVSEG- 242 QV ++ TI EV + Q+G Q ++ SSG KS AA++ + Sbjct: 384 QVLIEATILEVEGNDADQLGVQWAMGDLSSGVGIINFDNIGSSLKSIAANYLTGGGAGAA 443 Query: 243 -----------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 GD+ R + ++ AL+ T L+ P++ + + A G Sbjct: 444 SAIGAGGSLILGDYKEGSDGSRQLYGAMIQALKSNTKSNLLSTPSIVTMDNEEAYIVVGE 503 Query: 292 QHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 + T S ST + T++ D GV L P + G I L I+ EVS+ + N Sbjct: 504 NVPFVTGSVSTTSSGTANPYTTIERKDVGVTLKVVPHIGEGGTIRLEIEQEVSD--VKAN 561 Query: 345 AG---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G D+ + + R T+V G TIVL GL+ D+ ++ IP L IP LG LFR+ Sbjct: 562 KGQAQDLVTSK-RAIKTSVLAEHGNTIVLGGLISDNTSYSRQSIPGLGAIPGLGRLFRSD 620 Query: 402 RFNREETEIFIAATPFLV 419 + ++ + + P +V Sbjct: 621 GKSDQKRNLLVFIHPTIV 638 >gi|256823455|ref|YP_003147418.1| type IV pilus secretin PilQ [Kangiella koreensis DSM 16069] gi|256796994|gb|ACV27650.1| type IV pilus secretin PilQ [Kangiella koreensis DSM 16069] Length = 701 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 113/256 (44%), Gaps = 42/256 (16%) Query: 202 IAEVRR-----DI-LKQIGFQHSITGSSSGPSKSFAADFGGKF-VSE-------GGDFSV 247 I +VRR DI ++Q+ + I + G FA D G +F VS+ GDF+V Sbjct: 446 IEDVRRLVAQLDIPVRQVLIEARIVTADDG----FARDLGSRFGVSDVMNSGEVNGDFNV 501 Query: 248 K-------GVL--------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G L D + L ALE +A P + + Q +F G+ Sbjct: 502 NLPIANPAGSLGLSFARLQDGIVVDMELSALESENRGEVVASPKVIT-ANQKEAFIKAGE 560 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVI-----GVN 344 + +S+GA +V + + L TP + GR+ L + Q E VI G Sbjct: 561 EIPYLQGASSGAANVQFKEAVLELKVTPQITPDGRVILDLAITQDTRGENVIFTSPDGGG 620 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 + P+ ++ T V + +G TIVL G+ + + +PLL IP+LG LF+N++ Sbjct: 621 SSGAPAINTQEIGTQVLVDNGETIVLGGIFQHRTTYDESKVPLLGDIPLLGWLFKNTQRE 680 Query: 405 REETEIFIAATPFLVK 420 + E+ I TP +++ Sbjct: 681 DTKQELLIFVTPKIIE 696 >gi|271502312|ref|YP_003335338.1| type IV pilus secretin PilQ [Dickeya dadantii Ech586] gi|270345867|gb|ACZ78632.1| type IV pilus secretin PilQ [Dickeya dadantii Ech586] Length = 433 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 3/164 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + +A P L Q+AS G + Y+ S ++G+TS+ + + + T Sbjct: 262 LMALEQENEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 321 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P +L G+I L + + P + G++ + ++ T V + G TIVL G+ + Sbjct: 322 PRILHGGQITLNLLISQNMPGRAIKQGEGGEILAIDKQEIQTQVTVQDGETIVLGGIFQQ 381 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 Q + +P L +P +G LFR + E+ I TP L++ Sbjct: 382 QKNQGERQVPGLGALPGIGRLFRATSQQHTRRELVIFITPTLIQ 425 >gi|17547022|ref|NP_520424.1| GSPD-like protein [Ralstonia solanacearum GMI1000] gi|17429323|emb|CAD16010.1| probable type II secretory pathway, gspd-related protein [Ralstonia solanacearum GMI1000] Length = 789 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 22/243 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 E +V L+V + EV RD L +G + S PS A+ +G + G Sbjct: 338 EPEVMLEVEVLEVSRDRLTDLGIDWPNSFSLGTPSS--ASTWGALHHLTVNQLTASG--- 392 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATS 306 S L + T LA P + + + A G + + SS + S Sbjct: 393 -LSVTANLKLTD--TDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSGPVYSQS 449 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------YRV--RKADT 358 + D G+ L P V +G+++ EVS +++ + + Y++ R A T Sbjct: 450 IQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNAQTGLSSLAYQIGTRNAST 509 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 T+ L G T +L GL++D+ + +P L ++P+LG LF N + ++TEI + TP + Sbjct: 510 TLRLKDGETQILGGLIQDEDRDAANKVPGLGQLPVLGRLFSNHNGDHKKTEIVLQITPHI 569 Query: 419 VKP 421 V+P Sbjct: 570 VRP 572 >gi|262402018|ref|ZP_06078583.1| type II secretory pathway component PulD [Vibrio sp. RC586] gi|262351990|gb|EEZ01121.1| type II secretory pathway component PulD [Vibrio sp. RC586] Length = 675 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 21/181 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + +++A+ + L+ P++T + ASF G + V TG+T+ + +D Sbjct: 444 WTALINAVSNDSKSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 498 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L I+ EVS V+G N + R+ +T+V + G Sbjct: 499 TVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDG 557 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL GL+ + + + +PLL IP+LG LFR++ E+ + + +KP +R Sbjct: 558 QMLVLGGLIDERAIESESKVPLLGDIPVLGQLFRSTSSQVEKKNLMV-----FIKPTIIR 612 Query: 426 D 426 D Sbjct: 613 D 613 >gi|262370669|ref|ZP_06063994.1| type IV pilus biogenesis and competence protein pilQ [Acinetobacter johnsonii SH046] gi|262314469|gb|EEY95511.1| type IV pilus biogenesis and competence protein pilQ [Acinetobacter johnsonii SH046] Length = 390 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 114/254 (44%), Gaps = 16/254 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--- 238 +++++LL++A + QV ++ I D +++G + S G S + DF F Sbjct: 143 RRMIDLLDVAVK-QVMVEARIVTASTDFSRELGIKWS--AKKLGNSPVWGGDFQPSFDLG 199 Query: 239 ----VSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + G F+ G+L + L AL+ L+ P + Q A G + Sbjct: 200 VDLATNTAGTFNF-GLLKISDYMLNLELSALQADGHGEVLSAPKVLTGDKQKAYILRGTE 258 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 Y+T S++ G + + L TP++ G++ + ++ E +AG + Sbjct: 259 IPYQTWSATEGLKT-EFRAANLKLEVTPSITPDGKVQMALKIEKDTVGTLTSAGYL--IN 315 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + +T V + G T+VL G+ D Q E +P +P++GALF+N+ + +TE+ I Sbjct: 316 TNELETNVLVDDGETVVLGGIFDDIKQNQYEKVPFFGDLPVVGALFKNNTRSSAQTELLI 375 Query: 413 AATPFLVKPVAMRD 426 TP +V R+ Sbjct: 376 FVTPRIVNDSVSRN 389 >gi|296123515|ref|YP_003631293.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] gi|296015855|gb|ADG69094.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] Length = 915 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 15/203 (7%) Query: 220 TGSSSGPSKSFAADFGG-KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 TGS P F A+ G K+ GD + + ALE +A P + Sbjct: 566 TGSIIPPGAQFLANTAGLKYGFIAGDIT-----------GFIRALESIADTSLVASPQIR 614 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 A++ Q A G + YKT++ ++ T +V + G L P + G + + + E Sbjct: 615 ALNKQRAEMIIGNRLSYKTLAFNSTQTIENVNFLESGTKLIIRPFIAPDGLVRMEVHPER 674 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 S VI + G +P + T V + G T+V+ GL+ ++ + + +P+L IP++GA Sbjct: 675 SRAVINQSTG-LPDQDTTEVTTNVMVRDGQTVVIGGLISEESTESIDRVPVLGAIPLVGA 733 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 FRN E TE+ + TP +V Sbjct: 734 AFRNKSSRIERTELIVLITPRIV 756 >gi|71279149|ref|YP_267229.1| type IV pilus biogenesis protein PilQ [Colwellia psychrerythraea 34H] gi|71144889|gb|AAZ25362.1| type IV pilus biogenesis protein PilQ [Colwellia psychrerythraea 34H] Length = 706 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 2/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ +A P +T + + A G + Y+ +SS GAT+ + L T Sbjct: 545 LSALEKENKGEVIASPRITTANQKEAYIEQGVEIPYQEAASS-GATATQFKKAVLSLTVT 603 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + +I L + + + + +G P+ ++ T V + +G TIVL G+ + I Sbjct: 604 PHITPDDKIILDLVV-TQDTISDITSGFAPAIDTQRIGTQVLVNNGETIVLGGIYQQAII 662 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+L IP LG LFRNS E+ E+ I TP +V Sbjct: 663 STVSKIPILGDIPYLGWLFRNSSQLNEKKELLIFVTPRIV 702 >gi|297565761|ref|YP_003684733.1| type II and III secretion system protein [Meiothermus silvanus DSM 9946] gi|296850210|gb|ADH63225.1| type II and III secretion system protein [Meiothermus silvanus DSM 9946] Length = 771 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 37/251 (14%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---EGG---DFS 246 + QV L+V I V +++++G + GG V+ E G F Sbjct: 527 KQQVQLQVRIQAVNSSVIRELGLKWETIS-------------GGNLVASILEKGLSLIFD 573 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG-------------QSASFTSGGQH 293 L + L+ALE R +++ L SG A +GG+ Sbjct: 574 ATRSLASLNIRATLNALESQNLSRRISDANLLVESGYGNDTSDLRQANAAGAELKAGGKL 633 Query: 294 LYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 L T ++ST G SV D G+ L P + G+I L + T+ E V A D Sbjct: 634 LIVTTTASTSQGGGQQSVREFDVGLTLRLRPRITPDGQIILEVYTQTGEQP-QVLAPDRT 692 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 V ++ + G T+V+ GL++ + +PLL IPI+GALF+ + ++ E Sbjct: 693 FLPVNSTLSSFRIKDGQTVVMGGLVQTTTTNTENKVPLLGDIPIIGALFKQTTAENKQEE 752 Query: 410 IFIAATPFLVK 420 + + T +VK Sbjct: 753 LIVIITANIVK 763 >gi|33866866|ref|NP_898425.1| general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 8102] gi|33639467|emb|CAE08851.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 8102] Length = 344 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 95/174 (54%), Gaps = 10/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----- 309 SF + + A+ ++++ +TLA+PTL G++A +G Q + VS++ A T Sbjct: 145 SFYSYVEAMIQSSSAKTLAQPTLLVQEGETAMVETG-QSVITGVSATETANGSTQFQNTR 203 Query: 310 HDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPV-IGVNAG-DMPSYRVRKADT-TVELPSG 365 + G+ + + + + G I L ++ E+S P+ G G + + + RK ++ ++ L G Sbjct: 204 ENAGLTVDLSVSKIDDNGFISLELKPEISVPIPAGTQEGVGIFNIQARKLESGSIRLRDG 263 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++L G++ D +Q P+L +P++G LFR S +RE+ E+ I TP ++ Sbjct: 264 QSLILTGVITDSDRQQVRKWPILGDMPLIGQLFRQSSSSREKNELVIIVTPTIL 317 >gi|83648789|ref|YP_437224.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC 2396] gi|83636832|gb|ABC32799.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC 2396] Length = 561 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/264 (24%), Positives = 112/264 (42%), Gaps = 37/264 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSFAADFGGKFVSEGG 243 QV L+V I EV +L + GF+ + S S P+KS + V+ G Sbjct: 281 QVILEVKILEV---VLNK-GFEQGVNWSYFDEFTSKVDASGDPTKSLTLGQTSRSVTNPG 336 Query: 244 DFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 V R + F T+L L ++ L+ P ++ I+ Q A G + T + Sbjct: 337 LEGVFSAALRINDFTTLLQLLGEQGTVQVLSSPRISTINNQKAVIKVGDDEFFVTGIETN 396 Query: 303 GATS------------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNA 345 AT+ +T G+ L TP + G + L + VS+ I + A Sbjct: 397 DATTTSGTSNLISEVEITPFFSGIALDVTPQIGENGDVTLHVHPTVSDVEDQTKTISLGA 456 Query: 346 GDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 D+ VR+ D+ ++ +G +V+ GL+++ ++ + +PLL IP+LG FR Sbjct: 457 NDLVLPLAFSSVRETDSVIKARNGQVVVIGGLIRNLTEKTQAKVPLLGDIPLLGHAFRQK 516 Query: 402 RFNREETEIFIAATPFLVKPVAMR 425 R ++E+ I P + + R Sbjct: 517 RDTELKSELVILIRPIIADSESYR 540 >gi|260551051|ref|ZP_05825255.1| type II secretory pathway [Acinetobacter sp. RUH2624] gi|260405818|gb|EEW99306.1| type II secretory pathway [Acinetobacter sp. RUH2624] Length = 758 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 35/258 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------KSFAADF--GG----- 236 QV ++ I EV D Q+G Q ++ SSG S AA + GG Sbjct: 394 QVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGTAGAA 453 Query: 237 KFVSEGGDFSVKGVL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++ G + L R ++ ++ AL+ T L+ P++ + + A Sbjct: 454 SAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPSIVTMDNEEAYIVV 513 Query: 290 GGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVI 341 G + T S +T +T + + D GV L P + G + L ++ EVS + Sbjct: 514 GQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGEGGTVRLEVEQEVSAVQDSR 573 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G A D+ + + R T V G T+VL GL+ DD ++GIP LS IP +G LFR+ Sbjct: 574 G-QAADLVTSK-RAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRLFRSD 631 Query: 402 RFNREETEIFIAATPFLV 419 + + + + P +V Sbjct: 632 NRSNVKRNLLVFIHPTIV 649 >gi|312882862|ref|ZP_07742594.1| general secretion pathway protein D [Vibrio caribbenthicus ATCC BAA-2122] gi|309369381|gb|EFP96901.1| general secretion pathway protein D [Vibrio caribbenthicus ATCC BAA-2122] Length = 674 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 13/161 (8%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSP 325 L+ P++T + ASF G + + S+ G+ +V + G+ L P + Sbjct: 460 LSSPSITVMDNGEASFIVG-EEVPVITGSAAGSNNENPFQTVDRKEVGIKLKVVPQINEG 518 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L+I+ EVS V+G N + R+ +T+V + G IVL GL+ + + + + Sbjct: 519 NSVQLKIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVEDGQMIVLGGLIDERALESESKV 577 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 PLL IP LG LF+++R E+ + + +KP +RD Sbjct: 578 PLLGDIPYLGHLFKSTRTQVEKKNLMV-----FIKPTIIRD 613 >gi|312794853|ref|YP_004027775.1| general secretion pathway protein D [Burkholderia rhizoxinica HKI 454] gi|312166628|emb|CBW73631.1| General secretion pathway protein D [Burkholderia rhizoxinica HKI 454] Length = 847 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 18/187 (9%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLYKTVSSSTGATS 306 F +L AL ++ L+ P L + + A G G + T +++T ++ Sbjct: 504 FGLGGLLQALATSSDTNILSTPNLITLDNEEARIVVGQNVPVVTGSYATPTANTTTSVSA 563 Query: 307 VTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVE 361 T D G+ LH P + G + L+I E S G N G + S R +TV Sbjct: 564 FNTFDRQDVGITLHIKPQISEGGVLKLQIYQEDSAVQQGTQSNPGGV-SITKRSIQSTVL 622 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G IVL GL++D+ +P L IP+LG+LFR+ R ++ + + ++P Sbjct: 623 ADDGEIIVLGGLIQDNYANGNSKVPWLGNIPVLGSLFRSESKTRTKSNLMV-----FLRP 677 Query: 422 VAMRDLS 428 V +RD S Sbjct: 678 VIVRDQS 684 >gi|239907473|ref|YP_002954214.1| general secretion pathway protein D precursor [Desulfovibrio magneticus RS-1] gi|239797339|dbj|BAH76328.1| general secretion pathway protein D precursor [Desulfovibrio magneticus RS-1] Length = 685 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 16/202 (7%) Query: 236 GKFVSEGGD------FSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G FV G F VK G + + + +++A + + +A P L + + A+ T Sbjct: 441 GAFVPPAGGSLGGLAFPVKIGEVIYSNLQAMINASKSDNSFNIIATPQLMTLDNEEATIT 500 Query: 289 SGGQHLYKT---VSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVS---EP 339 Y T V ST DY G L TP + I L+++ E S E Sbjct: 501 VAENRPYLTSQDVGQSTTDRPYQRFDYKDVGTTLKVTPQINEGDSIKLKVKQETSRIDET 560 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V P+ R R +TT+ +G TIVL+GL+ + +P L +P++G LF+ Sbjct: 561 VTKETGALQPTTRKRVTETTIMCRNGETIVLSGLIGKSRAEGNSKVPGLGDVPVVGWLFK 620 Query: 400 NSRFNREETEIFIAATPFLVKP 421 N E T +++ TP + P Sbjct: 621 NKSVADERTNLYVFITPRITAP 642 >gi|315637872|ref|ZP_07893062.1| general secretory pathway protein D [Campylobacter upsaliensis JV21] gi|315482113|gb|EFU72727.1| general secretory pathway protein D [Campylobacter upsaliensis JV21] Length = 468 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 24/201 (11%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+ +F +VL+ L + + L+ P L A++ Q A + G Y+ SS G + T Sbjct: 264 GLRANINFNSVLNFLSQNGKTQVLSSPKLMALNNQQAIISVGDTINYQVKESSKGTENGT 323 Query: 309 T-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------ 353 T +Y G++L P + +I LRI +S+ + S R Sbjct: 324 TVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPRTIAPDTI 383 Query: 354 -RKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALFRNSRFNREETEI 410 +K T V + + T++L GL+ + Q+KE + LSKIP+LG LF + TEI Sbjct: 384 QKKLSTVVSMENNQTLILGGLISHN--QIKEASEVNFLSKIPLLGLLFSGDETSSNSTEI 441 Query: 411 FIAATPFLVKP----VAMRDL 427 TP +V ++++DL Sbjct: 442 VFIITPSIVDKQMGILSLKDL 462 >gi|22127358|ref|NP_670781.1| hypothetical protein y3484 [Yersinia pestis KIM 10] gi|108809090|ref|YP_653006.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua] gi|108810716|ref|YP_646483.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516] gi|145597787|ref|YP_001161863.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F] gi|167466374|ref|ZP_02331078.1| hypothetical protein YpesF_00430 [Yersinia pestis FV-1] gi|229837375|ref|ZP_04457538.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|229840587|ref|ZP_04460746.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842863|ref|ZP_04463015.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229900911|ref|ZP_04516035.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|294502759|ref|YP_003566821.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003] gi|21960442|gb|AAM87032.1|AE013951_7 hypothetical [Yersinia pestis KIM 10] gi|108774364|gb|ABG16883.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516] gi|108781003|gb|ABG15061.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua] gi|145209483|gb|ABP38890.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F] gi|229682250|gb|EEO78342.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|229690130|gb|EEO82187.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229696953|gb|EEO87000.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705498|gb|EEO91508.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|262360791|gb|ACY57512.1| hypothetical protein YPD4_0603 [Yersinia pestis D106004] gi|262364736|gb|ACY61293.1| hypothetical protein YPD8_0603 [Yersinia pestis D182038] gi|294353218|gb|ADE63559.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003] gi|320016744|gb|ADW00316.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 284 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 107/239 (44%), Gaps = 24/239 (10%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 I++V ++ V VS AD + ++ ++ K G A L + + + +L+ Sbjct: 44 IIKVQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNKNHQPISKTRVLVNN 103 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT--IQDSQRAV--ELSETFLSQSGRN 174 I +R DS I + + ++ +L G T +D+ ++ E + + + Sbjct: 104 TINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIASIVGEATASKKEKERET 163 Query: 175 QY-ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 Y +N + V+N + + +QV +K+TI E+ +D + IG + S++G + + Sbjct: 164 SYQSNPEYQGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNSIKSAAGAFQFL--N 221 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 F + +S T++HA+ + LAEP L+ +SG+ ASF GG+ Sbjct: 222 FNAQSIS-----------------TLVHAINDEAIAKVLAEPNLSVLSGEYASFLVGGE 263 >gi|119475138|ref|ZP_01615491.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2143] gi|119451341|gb|EAW32574.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2143] Length = 733 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 8/162 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L+ALE +++P + Q A SG + Y+ SS+ G T+++ + + L T Sbjct: 566 LNALESQGRGEIVSQPKVITGDKQEAIIKSGSEVPYQE-SSANGETTISFKEAVLKLQVT 624 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 P++ RI +++ E+++ IG N G +P+ + T V + +G T+VL G+ Sbjct: 625 PSITPDDRIIMKL--EINQDSIGTLVPSGNGGVVPTIDTTELTTQVLVGNGETVVLGGVF 682 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + + + +P+L IP LG LF N+ +E+TE I TP Sbjct: 683 RTVDVESESKVPVLGDIPYLGRLFTNTTVTQEKTETLIFITP 724 >gi|120553763|ref|YP_958114.1| type IV pilus secretin PilQ [Marinobacter aquaeolei VT8] gi|120323612|gb|ABM17927.1| type IV pilus secretin PilQ [Marinobacter aquaeolei VT8] Length = 704 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 3/176 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F++ D F + L ALE +++P + Q+AS SG + Y+ +SS GA Sbjct: 527 FAIGWGSDDFLVDLELSALESDGRAEVVSQPRVVTADRQTASIKSGEEIPYQEATSS-GA 585 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T++ + + L TP + +I + + V++ G +PS + T V + + Sbjct: 586 TNIEFKEAVLSLEVTPQITPDDKIIMDLV--VNQDSRGEVTAGIPSINTNEVTTQVLVAN 643 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+VL G+ + ++ P L IP LG LF+ + E +E+ I TP ++K Sbjct: 644 GETVVLGGIFQSEVATQTTKTPFLGDIPYLGRLFKRTEHIDERSELLIFITPKIIK 699 >gi|153871180|ref|ZP_02000417.1| Bacterial type II and III secretion system protein [Beggiatoa sp. PS] gi|152072356|gb|EDN69585.1| Bacterial type II and III secretion system protein [Beggiatoa sp. PS] Length = 442 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/267 (24%), Positives = 110/267 (41%), Gaps = 34/267 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS-SGP--------SKSFAADFG--GKFVSEGG 243 QV ++ IAE+ D +++G Q + G+ + P S + AD G + Sbjct: 138 QVLVEAVIAEISTDTARELGVQWLLYGNKGTAPFGLSNFDNSGTRIADLASAGYLANNNS 197 Query: 244 DFSVKGV-------LDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSG- 290 S+ + L RF+ F +L AL T L+ P+L + Q A G Sbjct: 198 STSLPNIGAGAFLGLGRFNNSFLNFGVLLRALASDTNTNVLSTPSLLTLDNQEAEIVVGQ 257 Query: 291 ------GQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 GQ+ S G T ++ D G+ L P + + L I+ EVS Sbjct: 258 NVPFVTGQYTNTGTSGGGGVTNPFQTIQREDIGIKLRVKPQINEGNAVKLEIEQEVSSLS 317 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 A R TTV + G +VL GL+ +D+QQ + +P L +PI+G LFR+ Sbjct: 318 RSSQATTDIVTNKRTIKTTVIVEDGNMVVLGGLIDEDLQQTAQKVPGLGDLPIIGHLFRS 377 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDL 427 + + + + P +++ A ++ Sbjct: 378 RSTQKIKRNLMVFLHPVIIRDAASENI 404 >gi|78224554|ref|YP_386301.1| type II and III secretion system protein:NolW-like [Geobacter metallireducens GS-15] gi|78195809|gb|ABB33576.1| type II and III secretion system protein:NolW-like protein [Geobacter metallireducens GS-15] Length = 636 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 17/241 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG----DFSVKGV 250 QV ++ IAEV D K++G Q +++G + + + A F F GG ++ V Sbjct: 361 QVFVQAVIAEVSLDKAKELGLQLAVSGGGTAGNTAEAGVFD-PFNFVGGASPQQAAILNV 419 Query: 251 LDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSST 302 L F+ + VL AL A+ L+ P + + A G L +T +ST Sbjct: 420 LTGFAGSSNLQLGGVLKALISNGAVNVLSTPNILTSDNKEAEIFVGENVPFLTQTNLTST 479 Query: 303 GAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTT 359 G + S+ D G+ L TP + + L I E+S V A D+ + + R A T Sbjct: 480 GLSQQSIERKDTGITLRITPQISEGEFVKLDIYQEISAVKDSVGQAKDLVTTK-RSAKTA 538 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + T+V+ GL++D + IP+L IP+LG F+ RE+T + I TP ++ Sbjct: 539 VVVKDKDTVVIGGLIQDRDTETINKIPILGDIPLLGWFFKTKSARREKTNLMIVLTPRII 598 Query: 420 K 420 + Sbjct: 599 R 599 >gi|222823425|ref|YP_002574999.1| type II protein secretion system D protein CtsD [Campylobacter lari RM2100] gi|222538647|gb|ACM63748.1| putative type II protein secretion system D protein CtsD [Campylobacter lari RM2100] Length = 463 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 124/291 (42%), Gaps = 46/291 (15%) Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 Y + +K + LN + QV + V+I V H SSG + D Sbjct: 190 YELARVEKYLKDLNKRLKKQVLIDVSIVAV-----------HLNKSHSSGIN---WQDLA 235 Query: 236 GKFVSEGGDF-----SVKGVLDRFSFET--VLHALERATAIRTLAEPTLTAISGQSASFT 288 K + DF VK + + + ET +L+ L+ L+ P L A++ Q A + Sbjct: 236 FKLNGDDNDFIINKGGVKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIIS 295 Query: 289 SGGQHLYKTVSSSTGATSVTT-----HDY----GVVLHFTPTVLSPGRIGLRIQTEVSEP 339 G Y+ SS G + TT ++Y G++L+ P + +I LRI +S+ Sbjct: 296 IGDTINYQVKESSKGTENGTTISETYNNYSIFVGILLNILPEISDDHKIMLRINPSLSDF 355 Query: 340 VIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 V+ P +K T VE+ G T++L GL+ + + LSKIP Sbjct: 356 KYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKNTISNHNEVSALSKIP 415 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRD----LSRPDDHYSVEDD 439 + GALF+ + N E+ I+ F++KP +R LS + + EDD Sbjct: 416 LFGALFQGKQ-NLED----ISEIVFIIKPSLIRADKKVLSLKELGFEHEDD 461 >gi|262166650|ref|ZP_06034387.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus VM223] gi|262026366|gb|EEY45034.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus VM223] Length = 545 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q A G + Y SSS+GAT+V+ + L T Sbjct: 383 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVT 441 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 442 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 501 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 502 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 543 >gi|317407154|gb|EFV87149.1| general secretion pathway protein D [Achromobacter xylosoxidans C54] Length = 870 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 17/189 (8%) Query: 247 VKGVLDRFSFETV-----LHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHL 294 VKG +D + + A++ L+ P L + QSAS G GQ++ Sbjct: 494 VKGTVDVLGNKVINLGVLARAMQNTGEANILSTPNLLTLDNQSASILVGKTVPFVTGQYV 553 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSY 351 +++ ++ D G+ L+ P + G + L I EVS E G + + Sbjct: 554 TNGGNNNNPFQTIQREDVGLKLNIRPQISEGGAVKLDIYQEVSSIDESRSSATTGIVTNK 613 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R DT+V + G IVL GLL+D++ +P LS IP+LG+LF+ R +T + Sbjct: 614 RA--IDTSVLIDDGQIIVLGGLLEDNVTLTSNNVPGLSSIPVLGSLFKYDSRKRTKTNLM 671 Query: 412 IAATPFLVK 420 + P++V+ Sbjct: 672 VFLRPYVVR 680 >gi|330820184|ref|YP_004349046.1| type II and III secretion system protein [Burkholderia gladioli BSR3] gi|327372179|gb|AEA63534.1| type II and III secretion system protein [Burkholderia gladioli BSR3] Length = 697 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 27/244 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKF---------VSE 241 + +VTL V + EV + +G Q+ I S+ G + G SE Sbjct: 323 QSEVTLDVQVLEVNVNDSVDLGLQYPGKIQFSALGAGEEVGLTLGDLLRLNRDRIGVASE 382 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S+ + L++ RTLA P + + + A+ G + T ++ Sbjct: 383 SGALSM-----------AIDMLQKQGKTRTLANPKIRVRNLEKANIRIGERVPIVTTTNG 431 Query: 302 TG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRV--RKA 356 G SV+ D G++L P V + +++ EVS + + +Y + R A Sbjct: 432 NGVVTESVSYQDVGLMLKVQPRVSLDDEVSVKVSLEVSNILSEQRTRSGLVAYSLGTRNA 491 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT + +G T VLAGL+K + + G+P LS +P+LG LF + R EETEI + TP Sbjct: 492 DTLMTARNGQTQVLAGLIKRSEIESRAGLPWLSSLPVLGRLFGSERTRNEETEIVLLITP 551 Query: 417 FLVK 420 + + Sbjct: 552 HIER 555 >gi|325529100|gb|EGD06093.1| putative secretion type II protein [Burkholderia sp. TJI49] Length = 608 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 109/242 (45%), Gaps = 21/242 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 E +V L+V + EV D + Q+G + + S PS A +G +V G+ Sbjct: 311 EPEVMLEVEVLEVSHDRMSQLGINWPNSFTVSTPSS--ADTWGVLHHLPINALNVSGLSA 368 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATS 306 F+ T LA P + A + + A G + + S + Sbjct: 369 TADFKLT------DTDANLLASPRIRARNKEKARIMIGDKVPVISSSSTPSTSGPSFTQM 422 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP-----SYRV--RKADTT 359 + D G+ L P V G +G+++ EVS +++G+ +Y++ R A T+ Sbjct: 423 IQYLDVGIKLEVEPQVYRDGDVGIKLNLEVSNITNTISSGNSQGLSSLAYQIGTRSASTS 482 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T ++ GL+ D+ ++ +P L ++P+LG LF + + ++TEI + TP +V Sbjct: 483 LRLRDGETQIMGGLISDEDRRNANKVPGLGQLPVLGRLFSDHGGDHKKTEIVLQITPHIV 542 Query: 420 KP 421 +P Sbjct: 543 RP 544 >gi|323497014|ref|ZP_08102037.1| general secretion pathway protein D [Vibrio sinaloensis DSM 21326] gi|323317858|gb|EGA70846.1| general secretion pathway protein D [Vibrio sinaloensis DSM 21326] Length = 675 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 37/220 (16%) Query: 233 DFGGKFV-----SEGGDF--------SVKGVLDRF---SFETVLHALERATAIRTLAEPT 276 D G+FV +E GDF SV G + ++ A+ + L+ P+ Sbjct: 406 DSDGEFVRNETTTEKGDFTTLAAALSSVNGAALSVVMGDWTALISAVSTDSNSNILSSPS 465 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPG 326 +T + ASF G + V TG+T+ + +D G+ L P + Sbjct: 466 ITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGN 520 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + L+I+ EVS V+G N + R+ +T+V + G IVL GL+ + + + +P Sbjct: 521 SVQLKIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVEDGQMIVLGGLIDERALESESKVP 579 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LL IP+LG LF+++ E+ + + +KP +RD Sbjct: 580 LLGDIPVLGHLFKSTNTQVEKKNLMV-----FIKPTIIRD 614 >gi|223938170|ref|ZP_03630067.1| peptidase M56 BlaR1 [bacterium Ellin514] gi|223893214|gb|EEF59678.1| peptidase M56 BlaR1 [bacterium Ellin514] Length = 1633 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 97/189 (51%), Gaps = 6/189 (3%) Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 VS + G+L ++ + LE A+ I L P++ SG+ A + L + + Sbjct: 431 VSAPKEQCFTGMLTGPQYQAAVKQLEMASCIDMLTAPSVITQSGRQAQIQA--VDLIEIL 488 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKA 356 ++++ + + +G VL PTV +P ++G+++ T ++ + ++A +P + + Sbjct: 489 TNASPSAAKMQLPFGPVLDVLPTV-TPDKLGVQL-TGIATVTMLLDAPSVVLPRIQFTQL 546 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + L G T+V+ GL+ + I +K+ +P+L+ IP+ G LFR+ ++ + + TP Sbjct: 547 STEMTLKDGQTLVMGGLMPETITIVKDRVPVLADIPLAGRLFRSGSTSKSRKYLIVFVTP 606 Query: 417 FLVKPVAMR 425 L+ P R Sbjct: 607 TLINPDGSR 615 >gi|261211295|ref|ZP_05925584.1| type II secretory pathway component PulD [Vibrio sp. RC341] gi|260839796|gb|EEX66407.1| type II secretory pathway component PulD [Vibrio sp. RC341] Length = 675 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 21/181 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + ++ A+ + L+ P++T + ASF G + V TG+T+ + +D Sbjct: 444 WTALISAVSNDSKSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 498 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L+I+ EVS V+G N + R+ +T+V + G Sbjct: 499 TVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDG 557 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL GL+ + + + +PLL IP+LG LFR++ E+ + + +KP +R Sbjct: 558 QMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIR 612 Query: 426 D 426 D Sbjct: 613 D 613 >gi|258625707|ref|ZP_05720586.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM603] gi|258581945|gb|EEW06815.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM603] Length = 571 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q A G + Y SSS+GAT+V+ + L T Sbjct: 409 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVT 467 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 468 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 527 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 528 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569 >gi|258620495|ref|ZP_05715533.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM573] gi|258587374|gb|EEW12085.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM573] Length = 572 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q A G + Y SSS+GAT+V+ + L T Sbjct: 410 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVT 468 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 469 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 528 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 529 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 570 >gi|238751132|ref|ZP_04612627.1| Protein transporter HofQ [Yersinia rohdei ATCC 43380] gi|238710610|gb|EEQ02833.1| Protein transporter HofQ [Yersinia rohdei ATCC 43380] Length = 376 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 12/233 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------GKFVSEGGDFSVK 248 QV L I + R+ L+++G + + G + S DF + +S G F+V Sbjct: 146 QVQLAAHIVTISRENLQELGVRWGM-GEAKQNSSLRMNDFNVNLPLPNRVISAG--FNVA 202 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + R + E+ I +A P L A Q+AS G Y G ++V Sbjct: 203 RIGGRLLELELSAL-EQENQIDIIASPHLVASHQQTASIKQGSDIPYTVSKGKKGISTVE 261 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGG 366 + + + TP +L G+I L ++ + P + + GD + + K + T + + G Sbjct: 262 FKEAVLGMEVTPKILRNGKITLDLKISQNMPGMAMKRGDSETLLIDKQEIKTQITVNDGE 321 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 TIVL G+ + Q +P+L+ IP LG LF+ + E+ I TP L+ Sbjct: 322 TIVLGGIFQQKSTQGVHKVPVLADIPWLGVLFKQDAQQQSRRELVIFITPKLI 374 >gi|157163858|ref|YP_001466818.1| PP family ATPase [Campylobacter concisus 13826] gi|157101371|gb|EAT98651.2| type II and III secretion system protein [Campylobacter concisus 13826] Length = 508 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 110/246 (44%), Gaps = 31/246 (12%) Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAI 269 ++GF I S S + G +S+G ++ L+ FS + +++ LE Sbjct: 256 ELGFNSYIGNPGSSTSSYASWTNKGNSLSDGFGRTLNIAANLN-FSLDGMINFLETNGKT 314 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDY----GVVLH 317 + ++ P +T ++ Q A + G Y+ + + + + T Y G++L+ Sbjct: 315 KVVSSPKVTTLNNQQALISVGDNINYRVMEETDNGSNNNNNNRLTTTYKQYSVFIGILLN 374 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR---------KADTTVELPSGGTI 368 P V +I LRI +S + + +R K T V++ SG TI Sbjct: 375 LLPEVSDNNKIMLRINPSLSSFKYAEDDTRSQNTAIREIAPDTVQKKLSTVVQVNSGDTI 434 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-----KPV- 422 +L GL+ + +PLL+ IP++G++F+++R TE+ TP +V KPV Sbjct: 435 ILGGLIGQTKDKQNTAVPLLADIPLIGSVFKSTRDGVRTTELIFVITPRVVDLEDAKPVQ 494 Query: 423 -AMRDL 427 +++DL Sbjct: 495 QSLKDL 500 >gi|262170433|ref|ZP_06038111.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus MB-451] gi|261891509|gb|EEY37495.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus MB-451] Length = 567 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q A G + Y SSS+GAT+V+ + L T Sbjct: 405 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVT 463 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 464 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 523 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 524 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 565 >gi|262170336|ref|ZP_06038014.1| type II secretory pathway component PulD [Vibrio mimicus MB-451] gi|261891412|gb|EEY37398.1| type II secretory pathway component PulD [Vibrio mimicus MB-451] Length = 675 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 21/181 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + +++A+ + L+ P++T + ASF G + V TG+T+ + +D Sbjct: 444 WTALINAVSNDSKSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 498 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L I+ EVS V+G N + R+ +T+V + G Sbjct: 499 TVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDG 557 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL GL+ + + + +PLL IP+LG LFR++ E+ + + +KP +R Sbjct: 558 QMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIR 612 Query: 426 D 426 D Sbjct: 613 D 613 >gi|258620393|ref|ZP_05715431.1| general secretion pathway protein D [Vibrio mimicus VM573] gi|258624627|ref|ZP_05719563.1| general secretion pathway protein D [Vibrio mimicus VM603] gi|258583091|gb|EEW07904.1| general secretion pathway protein D [Vibrio mimicus VM603] gi|258587272|gb|EEW11983.1| general secretion pathway protein D [Vibrio mimicus VM573] Length = 675 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 21/181 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + +++A+ + L+ P++T + ASF G + V TG+T+ + +D Sbjct: 444 WTALINAVSNDSKSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 498 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L I+ EVS V+G N + R+ +T+V + G Sbjct: 499 TVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDG 557 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL GL+ + + + +PLL IP+LG LFR++ E+ + + +KP +R Sbjct: 558 QMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIR 612 Query: 426 D 426 D Sbjct: 613 D 613 >gi|281354921|ref|ZP_06241415.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281317801|gb|EFB01821.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 794 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 12/183 (6%) Query: 249 GVLDRFSFET---VLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTG 303 G+ D+ + E L AL I+ ++ P L S +A G L + +++S Sbjct: 553 GIFDKDNPEENFGYLRALAGRDNIKVISSPQLLVTSNTTAKIQVGQDVPILTQDLTTSDS 612 Query: 304 ATSVTTHDY-----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 AT T Y G++L P V S I ++I+ +VSE + +A D P R Sbjct: 613 ATGNVTRSYTYEETGIILSLIPQVTSTDLISMQIEQKVSEAIKNTITSATDTPVISTRVL 672 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T + + +G T+V+ G++++ + +P+++ IP L F N+ + E TE+ + T Sbjct: 673 NTAMTIANGKTMVIGGMIQEKNNDRLQSVPIIADIPFLRRFFGNTNQSVERTELLVLVTG 732 Query: 417 FLV 419 ++V Sbjct: 733 YIV 735 >gi|78777581|ref|YP_393896.1| type II and III secretion system protein [Sulfurimonas denitrificans DSM 1251] gi|78498121|gb|ABB44661.1| type II and III secretion system protein [Sulfurimonas denitrificans DSM 1251] Length = 563 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 17/183 (9%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGAT--SVTT 309 F+ ++ L+ + +++ P + ++ Q A T+G ++ YK +S S T T SVTT Sbjct: 341 FTINNIIKFLKTQGDVSSISNPKVLTLNNQPALITAGTEYFYKIISDSLSTAGTGGSVTT 400 Query: 310 HDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAGDMPSYRVRKA 356 + GV+L TP + I L+I +SE GV P R R+ Sbjct: 401 QNQDLQSVFAGVLLDITPEISDDNMITLKINPSLSETTTDISITPGVERTMPPDLRRRQL 460 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + V L G I+L GL+ +P+L IPIL LF+ + E+ I P Sbjct: 461 SSVVTLRDGERIILGGLINTSNSIDVNKVPILGDIPILNYLFKYENRLKTTQELVIVIEP 520 Query: 417 FLV 419 +V Sbjct: 521 HIV 523 >gi|331004879|ref|ZP_08328296.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC1989] gi|330421333|gb|EGG95582.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC1989] Length = 553 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 100/201 (49%), Gaps = 25/201 (12%) Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSST--GATSVTTHD--- 311 T+L LE ++ L+ P ++ ++ Q A G + T +S+ST A+S T+ Sbjct: 347 TLLSLLETQGEMQVLSSPRVSTVNNQKAVIRVGTDQFFVTGISNSTISNASSTTSSPDIE 406 Query: 312 -----YGVVLHFTPTVLSPGRIGLRIQ---TEVSEP----VIGVNAGDMP-SYR-VRKAD 357 G+ L TP + G + L I + V+E V+G +A +P + R +R++D Sbjct: 407 LSSFFSGISLDVTPQISDEGDVILHIHPVISTVTEEQKNIVVGDSAFSLPLALRDIRESD 466 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + V+ SG IVL GL+++ I + P LS IP+ G LF ++ R ++E+ I Sbjct: 467 SIVKAKSGQVIVLGGLMQERINHVGGKRPGLSDIPVAGGLFNSNTDIRSKSELII----- 521 Query: 418 LVKPVAMRDLSRPDDHYSVED 438 L+KP + S DD + +D Sbjct: 522 LLKPTVVEQDSWVDDFNTSQD 542 >gi|262166741|ref|ZP_06034478.1| type II secretory pathway component PulD [Vibrio mimicus VM223] gi|262026457|gb|EEY45125.1| type II secretory pathway component PulD [Vibrio mimicus VM223] Length = 653 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 21/181 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + +++A+ + L+ P++T + ASF G + V TG+T+ + +D Sbjct: 422 WTALINAVSNDSKSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 476 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L I+ EVS V+G N + R+ +T+V + G Sbjct: 477 TVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDG 535 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL GL+ + + + +PLL IP+LG LFR++ E+ + + +KP +R Sbjct: 536 QMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIR 590 Query: 426 D 426 D Sbjct: 591 D 591 >gi|288574989|ref|ZP_06393346.1| type II and III secretion system protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570730|gb|EFC92287.1| type II and III secretion system protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 570 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 9/180 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 +T L AL A + LA P++ +SGQ AS Y + G + + + G Sbjct: 392 LDTGLKALVTANKGKVLANPSVITVSGQKASIKLVENLKYISARDDAGNPTYSDEEVGPK 451 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTVELPSGGTIVLA 371 L FTP V G I + + E VI G + P R+ T++ + G V+ Sbjct: 452 LEFTPLVGRDGVISVELSIATGE-VIAWKEGNQGEEFPQTSEREVVTSIRVRDGEPFVVG 510 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----PVAMRDL 427 GL + + IP+L IP+LG F++ + TE+ + P+++ P+ DL Sbjct: 511 GLFNERHTENTTKIPILGDIPLLGEFFKSKSKTDDRTEVVMVVIPYILNVTDGPIERWDL 570 >gi|269103695|ref|ZP_06156392.1| putative type II secretory pathway component EpsD [Photobacterium damselae subsp. damselae CIP 102761] gi|268163593|gb|EEZ42089.1| putative type II secretory pathway component EpsD [Photobacterium damselae subsp. damselae CIP 102761] Length = 579 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 11/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTH 310 + +++A+ L+ P++T + Q A + G + +T S+S+ T+V Sbjct: 350 WTALVNAVRTNRNANVLSTPSITVLDNQEAELSVGQEVPVQTGSTSSSNNDNPFTTVERK 409 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 D G+ L TP + + L I+ VS+ A D+ + R+ +T V + G I L Sbjct: 410 DVGIQLTVTPQINEGDSVKLDIKQVVSQVADAQGAVDI-RFDKRELNTAVLVKDGSMIAL 468 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 G++++ + + +P+L IP+LG+LFR++ +T + I +KP +RD Sbjct: 469 GGMMQEKALESESKVPILGDIPVLGSLFRSTNNETVKTNLLI-----FIKPTIIRD 519 >gi|82703698|ref|YP_413264.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411763|gb|ABB75872.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 749 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 13/169 (7%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSP 325 I LA P + + + A G + T +++ A+SV+ D G+ L T+ Sbjct: 411 INVLANPRIRVKNREKAKVLIGDKVPVVTTTAAANVGVASSVSYLDVGLKLDVESTISLQ 470 Query: 326 GRIGLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQL 381 + +++ EVS V + V G + +Y+V R A TT+ L G T VLAGL+ DD + Sbjct: 471 DEVSMKVSLEVSNIVKEVPVTGGGL-AYQVGTRTAATTLALKDGETQVLAGLISDDERTT 529 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 +P L+++P +G LF N R +TEI + TP +V R+++RP Sbjct: 530 LSKVPGLAELPWIGKLFINKNVVRNKTEIALLITPRIV-----RNIARP 573 >gi|1170050|sp|P31780|GSPD_AERHY RecName: Full=General secretion pathway protein D; Flags: Precursor gi|551421|emb|CAA47124.1| ExeD [Aeromonas hydrophila] Length = 678 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 16/181 (8%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTT--- 309 ++ ++ AL T L+ P++ + + ASF G + +T +S++G T+ +T Sbjct: 429 NWAMLVTALSTNTKSDILSTPSIVTMDNKEASFNVGQEVPVQTGTQNSTSGDTTFSTIER 488 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----GDMPSYRVRKADTTVELPSG 365 G L TP + + L I+ EVS +G A G P++ R V + SG Sbjct: 489 KTVGTKLVVTPQINEGDSVLLTIEQEVSS--VGKQATGTDGLGPTFDTRTVKNAVLVKSG 546 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T+VL GL+ + ++ +PLL IP+LG LFR++ N + + + ++P +R Sbjct: 547 ETVVLGGLMDEQTKEEVSKVPLLGDIPVLGYLFRSTSNNTSKRNLMV-----FIRPTILR 601 Query: 426 D 426 D Sbjct: 602 D 602 >gi|254787478|ref|YP_003074907.1| fimbrial assembly protein PilQ [Teredinibacter turnerae T7901] gi|237686656|gb|ACR13920.1| fimbrial assembly protein PilQ [Teredinibacter turnerae T7901] Length = 727 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 6/191 (3%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 P SF D G + G + + + F L AL+ + +++P + Q A Sbjct: 534 PQNSFV-DLG--VFNPTGSLAWNVISNNFMIGMELSALQDSGFAEIVSQPKVITGDKQQA 590 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 S SG ++ S+S G T+++ D + L TP + RI + ++ + + V G + Sbjct: 591 SIQSGTSVPFQEESAS-GGTTISFKDVVLRLDVTPQITPDNRIIMDLEI-LQDSVTGYES 648 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 G +P + DT+V + G T+VL G+ + ++ + +PLL IP+LG LFR Sbjct: 649 G-VPIIDITHLDTSVLVADGDTVVLGGIYATEQRKGQSKVPLLGDIPLLGRLFRYDISQE 707 Query: 406 EETEIFIAATP 416 ++ E+ I TP Sbjct: 708 DKRELLIFITP 718 >gi|238764794|ref|ZP_04625736.1| General secretion pathway protein D [Yersinia kristensenii ATCC 33638] gi|238696992|gb|EEP89767.1| General secretion pathway protein D [Yersinia kristensenii ATCC 33638] Length = 635 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 17/196 (8%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 +++ + AL + LA P++ + A F G Q + S+ T AT S++ Sbjct: 402 NWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 460 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPS-YRVRKADTTVELPSGG 366 GV+L P + + L I+ EVS G NA ++ S + R + V + SG Sbjct: 461 QSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSGTNANNLGSVFNKRVVNNAVLVKSGE 520 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T+V+ GLL + ++ +P L IP++G LF+ + N E++ + + ++P +R+ Sbjct: 521 TVVVGGLLDKKLSKVINKVPFLGDIPLIGRLFQQRKENIEKSNLIL-----FIRPTILRE 575 Query: 427 LSRPDDHYSVEDDAKA 442 +D+ V D A Sbjct: 576 ---TNDYSKVTADKYA 588 >gi|261344685|ref|ZP_05972329.1| protein transport protein HofQ [Providencia rustigianii DSM 4541] gi|282567605|gb|EFB73140.1| protein transport protein HofQ [Providencia rustigianii DSM 4541] Length = 346 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 107/231 (46%), Gaps = 10/231 (4%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGV- 250 + QV + I R L+ +G + + G ++ P S ++ +E G ++ + Sbjct: 120 QQQVQITAHIVSSTRTALQALGLEWGMLGEMATNPHHSRY----NRYNTEPGKVALNILK 175 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L E L ALE+A + +A P L A + AS G + Y V+++ + V Sbjct: 176 LGDGLLEMKLSALEKANLLSIIASPRLVASHQKPASIQQGTEIPY--VTNTDKKSHVQFK 233 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTI 368 D + + TPT+ ++ + ++ + P + + K + T+V + + T+ Sbjct: 234 DAVLGMEVTPTISRDNKVEMVLKISHNSPDTAITTSQNHHLSINKQEIATSVTIKNNDTL 293 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +L G+ + ++ + GIP LS++P+LG LF NS + + + + TP L+ Sbjct: 294 ILGGIFQQKQEKTEAGIPFLSQLPLLGNLFTNSFQHIDRRVLIVFITPKLI 344 >gi|253701270|ref|YP_003022459.1| type IV pilus secretin PilQ [Geobacter sp. M21] gi|251776120|gb|ACT18701.1| type IV pilus secretin PilQ [Geobacter sp. M21] Length = 926 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 21/259 (8%) Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPS-KSF 230 Q A K ++ L+ A E QV ++ I E + +G Q ++ GS+S S Sbjct: 674 QTALDDMKALLKTLD-APEKQVMIEARIVEATSTFTRDLGVQWGLSYRDGSASMAGINSV 732 Query: 231 AADFGG----------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 FGG G S + + L A ++ ++ P + + Sbjct: 733 DTGFGGVVSAAGPGATGAGGLGLGMSFGKLTSNIKLDMRLAAAATIGQVKIISTPKVVTL 792 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + ++A + G Y+T S+ T + + L TP + + G + ++I+ + P Sbjct: 793 NNKAAKISQGQSIPYQTTSAEGTKTEFV--EAALTLEVTPHITADGSVSMKIKASNNSP- 849 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G P ++A T + + +G T V+ G+ D + G+P LS IP+LG LF++ Sbjct: 850 ---GTGSPPPINKKEATTELVVSNGDTTVIGGIYVDSETESDTGVPFLSDIPLLGWLFKS 906 Query: 401 SRFNREETEIFIAATPFLV 419 + + +TE+ I TP ++ Sbjct: 907 NAKQKTKTELLIFITPKII 925 >gi|325981841|ref|YP_004294243.1| type IV pilus secretin PilQ [Nitrosomonas sp. AL212] gi|325531360|gb|ADZ26081.1| type IV pilus secretin PilQ [Nitrosomonas sp. AL212] Length = 698 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 5/159 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE R +A P + G A G + ++ +SS GATS+ D + L Sbjct: 533 LSALETDQKGRVIASPRVVTAHGVEAIIEQGDRIPFQQATSS-GATSIRFMDATLRLRVK 591 Query: 320 PTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + G+I + + V++ IG +N P+ ++ T V + +GGT+V+ G+ Sbjct: 592 PLITYNGQIDMELN--VNQDRIGAIINQFLPPAINTKQVTTKVLVENGGTVVIGGIFDRT 649 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 ++ +P+L IP+LG +FRN+ + E+ I TP Sbjct: 650 ENRVVNKVPMLGDIPVLGHVFRNTTRVDNKRELLIFVTP 688 >gi|114568932|ref|YP_755612.1| general secretion pathway protein D [Maricaulis maris MCS10] gi|114339394|gb|ABI64674.1| general secretion pathway protein D [Maricaulis maris MCS10] Length = 650 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 13/188 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F VL+A+E LA P++ A+ + A F SG Q + T + G+ +V Sbjct: 426 FGLVLNAVESDVNSNVLATPSIMALDNEEAYFLSG-QEIPVTTGEALGSNNTNPFRTVDR 484 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGT 367 + GV L P + + L I EVS VNAG D+ + + R+ TTV +G Sbjct: 485 EEVGVKLTVLPQITEGNTVRLHIVQEVSSVAGAVNAGSSDLITNK-REISTTVLADNGEI 543 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRD 426 IVL GL++ + + ++G+P L ++P +G LFR+ T + + P +++ A M+ Sbjct: 544 IVLGGLIQQEDEISEDGVPGLRRLPGVGRLFRSEGSTTRRTNLMVFIRPTIIRSEADMQA 603 Query: 427 LSRPDDHY 434 L+ D+ Y Sbjct: 604 LT--DNRY 609 >gi|295111311|emb|CBL28061.1| Type II secretory pathway, component PulD [Synergistetes bacterium SGP1] Length = 193 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 3/168 (1%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F+ ALE + LA P++ I G A + Y + G + +T G Sbjct: 7 EFDGAFRALEERGKGKALASPSVITIDGMEARVELTQDYPYISERDDAGNPTWSTQTVGP 66 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + TP V G I L + E E + G MP R T V + G V+ Sbjct: 67 QMTMTPRVGRDGVINLALDLETGEVIQMITGSTGEQMPRTSKRHVTTNVRVRDGEPFVIG 126 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GL D+ + + IP+L ++P+LG LF + +T++ + P+++ Sbjct: 127 GLFSDNKSRTRNRIPILGQLPLLGELFTYRQDEHRKTQVVMLVVPYVL 174 >gi|163751006|ref|ZP_02158238.1| MSHA biogenesis protein MshL [Shewanella benthica KT99] gi|161329296|gb|EDQ00294.1| MSHA biogenesis protein MshL [Shewanella benthica KT99] Length = 560 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 116/263 (44%), Gaps = 25/263 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252 QV ++ I EV Q G ++ G F GG +S+ + GV Sbjct: 281 QVIIEAKILEVTLSDGYQQGINWQNVLGHVGDTDIEFGTSTGGGSLSDQITSVIGGVTSL 340 Query: 253 RFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATS 306 +FS F T++ L+ + L+ P +T ++ Q A G + T SST G T Sbjct: 341 KFSGTNFSTMISLLDTQGDVDVLSSPRVTVLNNQKAVIKVGTDEYFVTNVSSTTISGITP 400 Query: 307 VTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV---SEPV----IGVNAGDMPSYR 352 +TT + G+ L TP + G + L I V E + I + ++P R Sbjct: 401 ITTPEVELTPFFSGIALDVTPQIDGDGNVILHIHPSVINIKEQIKTIKISGSTLELPLAR 460 Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++DT + SG +V+ GL+K + +L +PLL IP +G LF N + ++TE+ Sbjct: 461 SDIRESDTVIMARSGDVVVIGGLMKSENIELISKVPLLGDIPFIGELFTNRAKSLKKTEL 520 Query: 411 FIAATPFLVK-PVAMRDLSRPDD 432 I P +V ++L R D Sbjct: 521 VILLKPTVVGVDTWKKELQRSKD 543 >gi|161523243|ref|YP_001578255.1| general secretion pathway protein D [Burkholderia multivorans ATCC 17616] gi|160340672|gb|ABX13758.1| general secretion pathway protein D [Burkholderia multivorans ATCC 17616] Length = 775 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 19/163 (11%) Query: 295 YKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPS 350 Y ++S T + + T+D G+ LH P + G + L++ TE S N+ PS Sbjct: 544 YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNSQTGPS 603 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R +T+ +G IVL GL++D +PLL IP +G LFR+ R++T + Sbjct: 604 FTKRSIQSTILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNL 663 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 + ++PV + D D A+A NR + I G Sbjct: 664 MV-----FLRPVIIAD----------RDTAQAVTSNRYDYIQG 691 >gi|127514547|ref|YP_001095744.1| general secretion pathway protein D [Shewanella loihica PV-4] gi|126639842|gb|ABO25485.1| general secretion pathway protein D [Shewanella loihica PV-4] Length = 707 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 17/179 (9%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F ++ A+ T LA P++T + Q ASF G + T S ++ +V Sbjct: 449 FGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPVLTGSQNSSNGNSNPFQTVER 508 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGT 367 + GV L P + + L I+ EVS G+N G ++ R+ TTV SG Sbjct: 509 KEVGVKLKVVPQINEGTTVKLTIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQI 564 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +VL GL+ +++Q+ + +P L IPILG LF++S +++ + + +KP +RD Sbjct: 565 VVLGGLINEEVQESVQKVPFLGDIPILGHLFKSSSSGKKKKNLMV-----FIKPTIIRD 618 >gi|308272100|emb|CBX28708.1| hypothetical protein N47_G40320 [uncultured Desulfobacterium sp.] Length = 818 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 22/239 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSV----KG 249 QV ++ I E ++IG I + +GP+ S + GG + ++ +F KG Sbjct: 582 QVVIEARIVEATTSFSREIGV---IWSADAGPNSS--SSLGGTYDLNAAVNFPTTAANKG 636 Query: 250 VL---------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + F L A+E + ++ P + + + A+ G ++ Y + + Sbjct: 637 TIGFDFARINGSPFLLNAKLEAMEAQGEGKIVSAPKICTLDNKEATIKQGLRYPYNKLDT 696 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 S G T+ D + L P V RI + I+ + + +G+ D S+ ++A+T + Sbjct: 697 S-GNTTTVFEDVDLELKVKPHVTPDNRISMLIKIKKRD--LGIFINDQQSFTNKEAETEL 753 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G T+V+ G++K IP LS+IPILG F++ + E+ I TP +V Sbjct: 754 LVNDGDTVVIGGIIKTSKNTGGSLIPGLSRIPILGWFFKSDTKTDNKEELLIFITPKIV 812 >gi|225874165|ref|YP_002755624.1| transporter, outer bacterial membrane secretin (Secretin) family [Acidobacterium capsulatum ATCC 51196] gi|225794395|gb|ACO34485.1| transporter, outer bacterial membrane secretin (Secretin) family [Acidobacterium capsulatum ATCC 51196] Length = 583 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 110/256 (42%), Gaps = 42/256 (16%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-KFVSEGGDFSVKGVLDR 253 +V + VT+ EV RD +++IG P S + G + + + G S + Sbjct: 311 EVLVDVTVMEVSRDKMREIGL---------SPPTSLTVNSGSSQTLEQIGHTSAYSI--- 358 Query: 254 FSFETVLHA----LERATAIRTLAEPTLTAISGQSASFTSG-------GQHLYKTVSSST 302 T+ A L + + L P L A++G+ AS G G + Y T S+S Sbjct: 359 ----TIGQAAADFLLTDSNTQILQNPRLRALNGEQASLKLGERLPVATGSYTYATGSTSA 414 Query: 303 GA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKA 356 A T D GV + TP + + L++ +VS E + GV + P KA Sbjct: 415 AAETQFQYLDVGVNIDMTPQIHLDHTVTLKLGVDVSSENGTEDLEGV---EEPIISQEKA 471 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 V L +G + +LAGLLK ++ Q G P +IP + LF + E+ TP Sbjct: 472 QQIVRLKNGESTILAGLLKKEVSQTVSGWPGFGEIPFMKYLFTTQKHEVTSDELVFMITP 531 Query: 417 FLVK-----PVAMRDL 427 +++ P+ MR++ Sbjct: 532 HIIRSPQVDPLTMREI 547 >gi|212633381|ref|YP_002309906.1| type II and III secretion system protein:secretin [Shewanella piezotolerans WP3] gi|212554865|gb|ACJ27319.1| Type II and III secretion system protein:Secretin [Shewanella piezotolerans WP3] Length = 558 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 19/183 (10%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY 312 F T++ L+ + L+ P +TA + Q A G + T SST G T VTT + Sbjct: 352 FSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPEV 411 Query: 313 -------GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD------MPSYRVRKA 356 G+ L TP + + G + L I ++ E + D + +R++ Sbjct: 412 ELTPFFSGIALDVTPQIDAEGNVLLHIHPSVIDIKEQTKTIKISDSTLELPLAQSEIRES 471 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT ++ SG +V+ GL+K + +L +PLL IP LG F N + +TE+ I P Sbjct: 472 DTVIKAASGDVVVIGGLMKSENIELVSKVPLLGDIPYLGEAFTNRANSTVKTELVILLKP 531 Query: 417 FLV 419 +V Sbjct: 532 VVV 534 >gi|22127080|ref|NP_670503.1| general secretion pathway protein D [Yersinia pestis KIM 10] gi|45442607|ref|NP_994146.1| general secretion pathway protein D [Yersinia pestis biovar Microtus str. 91001] gi|108806450|ref|YP_650366.1| general secretion pathway protein D [Yersinia pestis Antiqua] gi|108813180|ref|YP_648947.1| general secretion pathway protein D [Yersinia pestis Nepal516] gi|145597997|ref|YP_001162073.1| general secretion pathway protein D [Yersinia pestis Pestoides F] gi|153949658|ref|YP_001399937.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP 31758] gi|162421010|ref|YP_001607617.1| general secretion pathway protein D [Yersinia pestis Angola] gi|166010333|ref|ZP_02231231.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. E1979001] gi|166212712|ref|ZP_02238747.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. B42003004] gi|167399809|ref|ZP_02305327.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167425419|ref|ZP_02317172.1| general secretion pathway protein D [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229837688|ref|ZP_04457848.1| general secretion pathway protein D [Yersinia pestis Pestoides A] gi|229903625|ref|ZP_04518738.1| general secretion pathway protein D [Yersinia pestis Nepal516] gi|270487407|ref|ZP_06204481.1| general secretion pathway protein D [Yersinia pestis KIM D27] gi|294503003|ref|YP_003567065.1| general secretion protein [Yersinia pestis Z176003] gi|21960134|gb|AAM86754.1|AE013921_5 putative general secretion protein [Yersinia pestis KIM 10] gi|45437472|gb|AAS63023.1| putative general secretion protein [Yersinia pestis biovar Microtus str. 91001] gi|108776828|gb|ABG19347.1| general secretion pathway protein D [Yersinia pestis Nepal516] gi|108778363|gb|ABG12421.1| general secretion pathway protein D [Yersinia pestis Antiqua] gi|145209693|gb|ABP39100.1| general secretion pathway protein D [Yersinia pestis Pestoides F] gi|152961153|gb|ABS48614.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP 31758] gi|162353825|gb|ABX87773.1| general secretion pathway protein D [Yersinia pestis Angola] gi|165990819|gb|EDR43120.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. E1979001] gi|166206004|gb|EDR50484.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. B42003004] gi|167050517|gb|EDR61925.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055819|gb|EDR65603.1| general secretion pathway protein D [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679395|gb|EEO75498.1| general secretion pathway protein D [Yersinia pestis Nepal516] gi|229704065|gb|EEO91077.1| general secretion pathway protein D [Yersinia pestis Pestoides A] gi|262361038|gb|ACY57759.1| general secretion protein [Yersinia pestis D106004] gi|262364982|gb|ACY61539.1| general secretion protein [Yersinia pestis D182038] gi|270335911|gb|EFA46688.1| general secretion pathway protein D [Yersinia pestis KIM D27] gi|294353462|gb|ADE63803.1| general secretion protein [Yersinia pestis Z176003] gi|320014111|gb|ADV97682.1| general secretion pathway protein D [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 640 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 18/190 (9%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 +++ +L AL T LA P++ + A F G Q + +S+ T T S++ Sbjct: 409 NWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNVG-QEVPVLISTQTTTTDKVYNSISR 467 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366 GV+L P + + L I+ EVS VN ++ S + R + V + SG Sbjct: 468 QSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVFNKRVVNNAVLVKSGE 527 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T+V+ GLL + +P L +P++G LFR ++ E++ + + +KP +R+ Sbjct: 528 TVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLIL-----FIKPTILRE 582 Query: 427 LSRPDDHYSV 436 D YSV Sbjct: 583 ----SDDYSV 588 >gi|91774432|ref|YP_544188.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91708419|gb|ABE48347.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 539 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 33/193 (17%) Query: 270 RTLAEPTLTAISGQSA---------SFTSGGQHLYKTVSSSTGATSVTTHD----YGVVL 316 + L+ P L ++ Q+A FT Q TV S +VTT GVV+ Sbjct: 333 KVLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGTVQGSANLQAVTTTPNTVPVGVVM 392 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN-------------AGDMPSYRVRKADTTVELP 363 TP + G + + ++ +S + V+ +P +VR+ ++ +++ Sbjct: 393 SVTPQINDSGLVNINVRPTISRVLGYVDDPNPQLAAVTPPIVSRIPQIQVRELESMLQIN 452 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFIAATPFLVKPV 422 SG T VL GL++D+IQQ + +P ++K+P++G LF S FN +TE+ I ++P+ Sbjct: 453 SGNTAVLGGLMQDNIQQATDKVPGIAKVPLVGKLFTARSNFN-VKTELVI-----FLRPI 506 Query: 423 AMRDLSRPDDHYS 435 +R+ S D + Sbjct: 507 VIRNASLESDELA 519 >gi|302184967|ref|ZP_07261640.1| general secretion pathway protein D [Pseudomonas syringae pv. syringae 642] Length = 775 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHD 311 + + L ALE + L+ P+L ++ Q A G S +T T++++ + Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVE 630 Query: 312 Y---GVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVN-AGDMPSYRVRKADTTVELPSG 365 Y GV+L P + G + + IQ +VS + G N A P R T V SG Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTTSGTNDANGNPRISTRSVATQVAAQSG 690 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ Sbjct: 691 QTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI 744 >gi|332163311|ref|YP_004299888.1| putative outer membrane porin HofQ [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667541|gb|ADZ44185.1| putative outer membrane porin HofQ [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861918|emb|CBX72088.1| protein transport protein hofQ [Yersinia enterocolitica W22703] Length = 439 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 2/153 (1%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 I +A P L Q+AS G Y GAT++ + + + TP +L G+I Sbjct: 285 IDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFKEAVLGMEVTPKILRNGKI 344 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 L ++ + P + + GD + + K + T + + G TIVL G+ + +P Sbjct: 345 TLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETIVLGGIFQQKSSHGLNKVP 404 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +L+ IP LG LF+ + E+ I TP L+ Sbjct: 405 ILADIPWLGGLFKQDARQQSRRELVIFITPRLI 437 >gi|189348900|ref|YP_001944528.1| general secretion pathway protein D [Burkholderia multivorans ATCC 17616] gi|189332922|dbj|BAG41992.1| general secretion pathway protein D [Burkholderia multivorans ATCC 17616] Length = 768 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 19/163 (11%) Query: 295 YKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPS 350 Y ++S T + + T+D G+ LH P + G + L++ TE S N+ PS Sbjct: 537 YSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNSQTGPS 596 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R +T+ +G IVL GL++D +PLL IP +G LFR+ R++T + Sbjct: 597 FTKRSIQSTILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNL 656 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 + ++PV + D D A+A NR + I G Sbjct: 657 MV-----FLRPVIIAD----------RDTAQAVTSNRYDYIQG 684 >gi|167571805|ref|ZP_02364679.1| general secretion pathway protein D [Burkholderia oklahomensis C6786] Length = 743 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+L FS + + L + TL + GQ+ +G Y ++S + Sbjct: 482 GLLQYFSGVSDANVLSTPNLV-TLDNEEAKIVVGQNVPIPTGS---YSNLTSGNTNNAFN 537 Query: 309 THD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364 T+D G+ LH P + G + L++ TE S V G + + P++ R +TV + Sbjct: 538 TYDRRDVGLTLHVKPQITDGGILKLQLYTEDSSVVNGTLTSQTGPTFNKRSIQSTVLADN 597 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G IVL GL++D+ Q +PLL IP +G LFR+ R +T + + ++PV + Sbjct: 598 GEIIVLGGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRTKTNLMV-----FLRPVII 652 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 D + A+A NR + I G Sbjct: 653 GD----------RETAQAVTSNRYDYIQG 671 >gi|51597379|ref|YP_071570.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP 32953] gi|186896487|ref|YP_001873599.1| general secretion pathway protein D [Yersinia pseudotuberculosis PB1/+] gi|51590661|emb|CAH22303.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP 32953] gi|186699513|gb|ACC90142.1| general secretion pathway protein D [Yersinia pseudotuberculosis PB1/+] Length = 640 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 18/190 (9%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 +++ +L AL T LA P++ + A F G Q + +S+ T T S++ Sbjct: 409 NWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNVG-QEVPVLISTQTTTTDKVYNSISR 467 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366 GV+L P + + L I+ EVS VN ++ S + R + V + SG Sbjct: 468 QSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVFNKRVVNNAVLVKSGE 527 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T+V+ GLL + +P L +P++G LFR ++ E++ + + +KP +R+ Sbjct: 528 TVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLIL-----FIKPTILRE 582 Query: 427 LSRPDDHYSV 436 D YSV Sbjct: 583 ----SDDYSV 588 >gi|167560915|ref|ZP_02353831.1| general secretion pathway protein D [Burkholderia oklahomensis EO147] Length = 743 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G+L FS + + L + TL + GQ+ +G Y ++S + Sbjct: 482 GLLQYFSGVSDANVLSTPNLV-TLDNEEAKIVVGQNVPIPTGS---YSNLTSGNTNNAFN 537 Query: 309 THD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364 T+D G+ LH P + G + L++ TE S V G + + P++ R +TV + Sbjct: 538 TYDRRDVGLTLHVKPQITDGGILKLQLYTEDSSVVNGTLTSQTGPTFNKRSIQSTVLADN 597 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G IVL GL++D+ Q +PLL IP +G LFR+ R +T + + ++PV + Sbjct: 598 GEIIVLGGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRTKTNLMV-----FLRPVII 652 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 D + A+A NR + I G Sbjct: 653 GD----------RETAQAVTSNRYDYIQG 671 >gi|113869383|ref|YP_727872.1| pili assembly protein PilQ [Ralstonia eutropha H16] gi|113528159|emb|CAJ94504.1| pili assembly protein PilQ [Ralstonia eutropha H16] Length = 706 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 4/167 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + + A G + Y+ +SS GATSV + L T Sbjct: 543 LSALEADGKGKIISSPRVVTANNIKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVT 601 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ +G+ + + T V + +GGT+V+ G+ Sbjct: 602 PQITPEGNVLLDV--DVNKDSVGIQTTSGFAIDTKHVQTQVLVENGGTVVIGGIYTQTES 659 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKPVAMR 425 + +PLL IP+LG LF+N+ R TE+ + TP L + V++R Sbjct: 660 NETDKVPLLGDIPVLGYLFKNNAKVRNRTELLVFLTPRILNESVSLR 706 >gi|54307500|ref|YP_128520.1| putative fimbrial assembly protein [Photobacterium profundum SS9] gi|46911920|emb|CAG18718.1| putative fimbrial assembly protein [Photobacterium profundum SS9] Length = 567 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 7/164 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q+A G + Y SSS GA SV + L T Sbjct: 405 LSALQSESKAEIISSPRLVTTNKQTAYIEQGTEIPYLEASSS-GAVSVAFKKAVLSLMVT 463 Query: 320 PTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P + ++ L + EP V G+ G+ S ++ T V + +G TIVL G+ + Sbjct: 464 PQITPDNKLVLDLVVTQDEPGKTVVTGI--GEAVSINTQRIGTQVLVENGETIVLGGIYQ 521 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +PLL +P LGALFR+S + E+ I TP +V Sbjct: 522 HQVNKSVTKVPLLGDLPYLGALFRHSLEEMGKRELLIFITPKIV 565 >gi|150260167|ref|ZP_01916895.1| general secretion pathway protein D [Yersinia pestis CA88-4125] gi|165925049|ref|ZP_02220881.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. F1991016] gi|165937283|ref|ZP_02225847.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. IP275] gi|167419065|ref|ZP_02310818.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167466632|ref|ZP_02331336.1| general secretion pathway protein D [Yersinia pestis FV-1] gi|218927995|ref|YP_002345870.1| general secretion pathway protein D [Yersinia pestis CO92] gi|229840719|ref|ZP_04460878.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842725|ref|ZP_04462879.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. India 195] gi|115346606|emb|CAL19488.1| general secretion pathway protein D [Yersinia pestis CO92] gi|149289575|gb|EDM39652.1| general secretion pathway protein D [Yersinia pestis CA88-4125] gi|165914757|gb|EDR33370.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. IP275] gi|165923249|gb|EDR40400.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. F1991016] gi|166963059|gb|EDR59080.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229690205|gb|EEO82260.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. India 195] gi|229697085|gb|EEO87132.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. PEXU2] Length = 640 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 18/190 (9%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 +++ +L AL T LA P++ + A F G Q + +S+ T T S++ Sbjct: 409 NWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNVG-QEVPVLISTQTTTTDKVYNSISR 467 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366 GV+L P + + L I+ EVS VN ++ S + R + V + SG Sbjct: 468 QSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVFNKRVVNNAVLVKSGE 527 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T+V+ GLL + +P L +P++G LFR ++ E++ + + +KP +R+ Sbjct: 528 TVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLIL-----FIKPTILRE 582 Query: 427 LSRPDDHYSV 436 D YSV Sbjct: 583 ----SDDYSV 588 >gi|260912709|ref|ZP_05919195.1| type IV pilus secretin PilQ [Pasteurella dagmatis ATCC 43325] gi|260633087|gb|EEX51252.1| type IV pilus secretin PilQ [Pasteurella dagmatis ATCC 43325] Length = 431 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 61/262 (23%), Positives = 109/262 (41%), Gaps = 22/262 (8%) Query: 181 SKKVMNLLNIAGE-----DQVTLKVTIAEVRRDILKQIG----------FQHSITGSS-- 223 S+ V N+ + E +Q+ ++ I + + LK++G H + GS Sbjct: 167 SQSVRNIKKLVAEMDKPIEQIAIEARIVTISDESLKELGVRWGLLNPTELSHRVAGSLDA 226 Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 S S+ +F G ++ + L ALER + +A P L Sbjct: 227 NGFSQISEQLNVNFATSITPAGSLALQLAKINGRLLDLELTALERENNVEIIASPRLLTT 286 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP- 339 + +SAS G + Y S SV + + L TP + +I L + + P Sbjct: 287 NKKSASIKQGTEIPYVVTSGKNETQSVEFREAVLGLDVTPHISKDNQILLDLVVSQNSPG 346 Query: 340 -VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + +G++ S ++ +T V G TIVL G+ D + + + +P+L IP++ LF Sbjct: 347 ARVAYGSGEIVSIDKQEINTQVVAKDGETIVLGGVFHDSMTKGVDKVPVLGDIPMIKHLF 406 Query: 399 RNSRFNREETEIFIAATPFLVK 420 R ++ E+ I TP ++K Sbjct: 407 RKQNERHQKRELVIFVTPRILK 428 >gi|119470430|ref|ZP_01613158.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonadales bacterium TW-7] gi|119446355|gb|EAW27631.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonadales bacterium TW-7] Length = 697 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 5/160 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE +A P + A + Q A G + Y T S+S+GAT+V+ + L T Sbjct: 535 LSALEEENKGEIIASPRIIAANQQKARIEQGTEIPY-TESASSGATTVSFKKAVLSLEVT 593 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + ++ L I + V+ G+ S ++ T V + +G TIVL G+ + Sbjct: 594 PHITPDNKVILDLIITQDTRGDVVQTGTGEAVSIDTQEIQTQVLVENGQTIVLGGIFQQQ 653 Query: 378 IQQLKEGIPLLSKIPILGALFRN-SRFNREETEIFIAATP 416 I +P+L IP +G LF++ S FN E+ E+ I TP Sbjct: 654 IINTTNKVPVLGDIPYVGRLFKSTSEFN-EKRELLIFVTP 692 >gi|2853000|gb|AAC38777.1| XqhA [Pseudomonas aeruginosa] Length = 713 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 26/252 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242 Q+ ++ I E+ +I +G Q ++ FA D G GK +E Sbjct: 352 QLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFA-DSGLSIGTLLGALQAGKPPAEL 410 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D ++ G+ R F ++ AL R + L+ P+L + Q A G ++T S +T Sbjct: 411 PDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 469 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351 A T+V D GV L TP + + L I+ E+S + A D+ + Sbjct: 470 SASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVTN 529 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R +TV G IVL GL++DD+Q+ +PLL IP +G LFR+SR R + + Sbjct: 530 K-RSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588 Query: 412 IAATPFLVKPVA 423 + P +V+ A Sbjct: 589 VFLRPSIVRDAA 600 >gi|291613156|ref|YP_003523313.1| pilus (MSHA type) biogenesis protein MshL [Sideroxydans lithotrophicus ES-1] gi|291583268|gb|ADE10926.1| pilus (MSHA type) biogenesis protein MshL [Sideroxydans lithotrophicus ES-1] Length = 614 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/201 (22%), Positives = 94/201 (46%), Gaps = 39/201 (19%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDY---------GVVL 316 ++ L+ P L+ ++ Q+A+ +Y T++ + G+T+ VT + G + Sbjct: 399 VKVLSSPKLSVMNNQTATLKVVDNKVYFTITVTPGSTNGTIVTPPTFSTTAVPVAVGFTM 458 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----------------------MPSYRVR 354 + TP + + + ++ ++ + VN + +P R R Sbjct: 459 NVTPEINDSDYVTINVRPTITRIIDYVNDPNPNLANPCGTGVTSCAVAAIVNRVPEIRTR 518 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + ++ + + SG VL GL++D+I +G+PLL +IP +G+LF+N + +TE+ I Sbjct: 519 EMESIIRVSSGQIAVLGGLMQDEINNQSDGVPLLDEIPGIGSLFKNRNDTKTKTELVI-- 576 Query: 415 TPFLVKPVAMRDLSRPDDHYS 435 ++PV ++D S D S Sbjct: 577 ---FLRPVIIKDASLDGDFNS 594 >gi|212633091|ref|YP_002309616.1| type II and III secretion system protein:NolW-like protein [Shewanella piezotolerans WP3] gi|212554575|gb|ACJ27029.1| Type II and III secretion system protein:NolW-like protein [Shewanella piezotolerans WP3] Length = 721 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 17/179 (9%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F ++ A+ T LA P++T + Q ASF G + T S ++ +V Sbjct: 443 FGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVER 502 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGT 367 + GV L P V + L I+ EVS G+N G ++ R+ TTV SG Sbjct: 503 KEVGVKLKVVPQVNEGNAVKLTIEQEVS----GINGKTGVDVTFATRRLTTTVMADSGQI 558 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +VL GL+ +++Q+ + +P L IPI+G LF++S +++ + + +KP +RD Sbjct: 559 VVLGGLINEEVQESVQKVPFLGDIPIIGHLFKSSSSGKKKKNLMV-----FIKPTIIRD 612 >gi|258406114|ref|YP_003198856.1| type II and III secretion system protein [Desulfohalobium retbaense DSM 5692] gi|257798341|gb|ACV69278.1| type II and III secretion system protein [Desulfohalobium retbaense DSM 5692] Length = 499 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 1/160 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + LA P+LT + QSAS G + Y+T + G V D + L Sbjct: 336 LQALEKEGQVNILASPSLTTMDNQSASTQHGERVPYET-TDEDGDRVVKFEDVAMGLKVH 394 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P ++ + + I E N P R ++ +T + + +G TIV++GL K + Sbjct: 395 PRIIEGDLMAMDIVVTKDEVDFSQNVQGNPLIRTKETETNLLVRNGETIVISGLSKQTVS 454 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G+P L K+P L LF+ + + E + TP ++ Sbjct: 455 GTEHGVPGLRKVPGLSWLFKGIDKSEDMEEFMVFITPTIL 494 >gi|311693304|gb|ADP96177.1| LOW QUALITY PROTEIN: pilus (MSHA type) biogenesis protein MshL [marine bacterium HP15] Length = 570 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/260 (24%), Positives = 108/260 (41%), Gaps = 39/260 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGKFVSE---GGD 244 QV L+ I E+ + Q G S IT S P A G+ + GG Sbjct: 278 QVILEAKILEIALNEGYQQGINWSDIQSASSITASDGLPEDFTAQALAGQVIQTSDIGGL 337 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------- 295 FS + F ++ L + ++ L+ P ++ ++ Q A G + Sbjct: 338 FSAS--VRAGDFTGLIELLGKQGNVQILSSPRISTVNNQKAVIKVGTDEFFCHRYDFDDN 395 Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAG 346 S++ + +T G+ L TP + G I L + VSE VI + Sbjct: 396 NSAVTATDSTSTSVELTPFFSGISLDVTPQISESGVITLHVHPSVSEVTDQEKVITIGER 455 Query: 347 D----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 D + S VR+ D+ + SG +V+ GL+++ + +P S+IP++G LF+ R Sbjct: 456 DVTLPLASSTVRETDSVIRAESGQIVVIGGLIQNSSEDNNSAVPFFSEIPLVGELFKQRR 515 Query: 403 FNREETEIFIAATPFLVKPV 422 F ++E+ I L++PV Sbjct: 516 FQSRKSELVI-----LLRPV 530 >gi|318607800|emb|CBY29298.1| type IV pilus biogenesis protein PilQ [Yersinia enterocolitica subsp. palearctica Y11] Length = 416 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 2/153 (1%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 I +A P L Q+AS G Y GAT++ + + + TP +L G+I Sbjct: 262 IDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFKEAVLGMEVTPKILRNGKI 321 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 L ++ + P + + GD + + K + T + + G TIVL G+ + +P Sbjct: 322 TLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETIVLGGIFQQKSSHGLNKVP 381 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +L+ IP LG LF+ + E+ I TP L+ Sbjct: 382 ILADIPWLGGLFKQDARQQSRRELVIFITPRLI 414 >gi|254240262|ref|ZP_04933584.1| secretion protein XqhA [Pseudomonas aeruginosa 2192] gi|126193640|gb|EAZ57703.1| secretion protein XqhA [Pseudomonas aeruginosa 2192] Length = 776 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 26/252 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242 Q+ ++ I E+ +I +G Q ++ FA D G GK +E Sbjct: 352 QLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFA-DSGLSIGTLLGALQAGKPPAEL 410 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D ++ G+ R F ++ AL R + L+ P+L + Q A G ++T S +T Sbjct: 411 PDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 469 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351 A T+V D GV L TP + + L I+ E+S + A D+ + Sbjct: 470 SASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVTN 529 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R +TV G IVL GL++DD+Q+ +PLL IP +G LFR+SR R + + Sbjct: 530 K-RSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588 Query: 412 IAATPFLVKPVA 423 + P +V+ A Sbjct: 589 VFLRPSIVRDAA 600 >gi|332851464|ref|ZP_08433461.1| general secretion pathway protein D [Acinetobacter baumannii 6013150] gi|332866854|ref|ZP_08437241.1| general secretion pathway protein D [Acinetobacter baumannii 6013113] gi|332729917|gb|EGJ61248.1| general secretion pathway protein D [Acinetobacter baumannii 6013150] gi|332734382|gb|EGJ65503.1| general secretion pathway protein D [Acinetobacter baumannii 6013113] Length = 758 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 109/262 (41%), Gaps = 43/262 (16%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------KSFAADF--------- 234 QV ++ I EV D Q+G Q ++ SSG S AA + Sbjct: 394 QVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGSAGAA 453 Query: 235 ---------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 G E G+F R ++ ++ AL+ T L+ P++ + + A Sbjct: 454 SAIANGANKGNGATLELGNFDNS----RKAYGALIQALKTNTKSNLLSTPSIVTMDNEEA 509 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVS-- 337 G + T S +T +T + + D GV L P + G + L ++ EVS Sbjct: 510 YIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRLEVEQEVSAV 569 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + G A D+ + + R T V G T+VL GL+ DD ++GIP LS IP +G L Sbjct: 570 QDSRG-QAADLVTSK-RAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRL 627 Query: 398 FRNSRFNREETEIFIAATPFLV 419 FR+ + + + + P +V Sbjct: 628 FRSDNRSNVKRNLLVFIHPTIV 649 >gi|257454588|ref|ZP_05619844.1| general secretion pathway protein D [Enhydrobacter aerosaccus SK60] gi|257447898|gb|EEV22885.1| general secretion pathway protein D [Enhydrobacter aerosaccus SK60] Length = 813 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 34/259 (13%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------- 245 DQV ++ I E+ + +Q+G Q ++ ++SG + G V + Sbjct: 408 DQVLIQAAIMEISGNDTQQLGVQWAMGNANSGVGVINFNNIGASAVGLASEILSKTPGTA 467 Query: 246 --SVKGVL------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG- 290 SV G L +R + +L A+ + L+ P++ + + A+ G Sbjct: 468 AASVAGALLGIGTSKTDSNGNREFYGAILQAINKTNNANLLSMPSILTLDNEKANILVGQ 527 Query: 291 ------GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-V 343 G + + SS+T +V+ D G+ L+ P + G + L I EVS V G + Sbjct: 528 NVPFVTGSYTTASNSSTTPFQTVSRQDVGINLNVIPHIGDNGSVRLEISQEVSSIVDGTL 587 Query: 344 N--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 N +G + + + K TT+ T+ L GL++D+ ++ +P L PILG LFR+ Sbjct: 588 NNVSGVVTNKNLIK--TTILADDQQTVALGGLMRDNSTYGQQKVPGLGDAPILGNLFRSK 645 Query: 402 RFNREETEIFIAATPFLVK 420 N ++T + + P +++ Sbjct: 646 SKNSDKTNLIVFLQPTILR 664 >gi|311693369|gb|ADP96242.1| type 4 fimbrial biogenesis protein PilQ [marine bacterium HP15] Length = 688 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 3/181 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F++ D F + L ALE +++P + Q+AS SG + Y+ +SS GA Sbjct: 511 FAIGWGSDNFLVDLELSALESDGQAEVVSQPRVVTADRQTASIKSGEEIPYQEATSS-GA 569 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T++ + + L TP + +I + + V++ G +PS T V + + Sbjct: 570 TNIEFKEAVLSLEVTPQITPDDKIIMDLV--VNQDSRGEVTAGIPSINTNSVTTQVLVGN 627 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T+VL G+ + ++ P L IP LG +F+ + E +E+ I TP ++K + Sbjct: 628 GETVVLGGIFQSEVATQTTKTPFLGDIPYLGRIFKRTEHLDERSELLIFITPKIIKNDLL 687 Query: 425 R 425 R Sbjct: 688 R 688 >gi|239814151|ref|YP_002943061.1| type IV pilus secretin PilQ [Variovorax paradoxus S110] gi|239800728|gb|ACS17795.1| type IV pilus secretin PilQ [Variovorax paradoxus S110] Length = 714 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 2/137 (1%) Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Q+ + G+ + ++S+GATS++ + L TP + G I L + +VS+ G Sbjct: 573 QTKALIEQGEEIPYQQATSSGATSISFRKAVLKLEVTPQITPEGNIILTL--DVSKDARG 630 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 VN P+ + T V + +GGT+V+ G+ + + +P+L ++P LGALFR Sbjct: 631 VNTSAGPAINTKHVQTEVLVENGGTVVIGGIFELTETNDESRVPVLGEVPYLGALFRKRE 690 Query: 403 FNREETEIFIAATPFLV 419 +TE+ + TP ++ Sbjct: 691 RVANKTEMLVFITPKMI 707 >gi|291327009|ref|ZP_06126658.2| competence protein E [Providencia rettgeri DSM 1131] gi|291312226|gb|EFE52679.1| competence protein E [Providencia rettgeri DSM 1131] Length = 358 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 4/166 (2%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 E L ALE+ + +A P L A Q AS G + Y V+S+ T V D + Sbjct: 193 LEMKLKALEKENLLSIIASPRLVASHQQPASIQQGTEIPY--VTSNDKKTHVQFKDAVLG 250 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGL 373 + TP+++ +I L ++ + P + + + K + T V + + T++L G+ Sbjct: 251 MDVTPSIVRDEKIELNLKISHNSPDTALTSSQHHHLAINKQEIATNVTIKNNETLILGGI 310 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + ++ + G+P LS IP LG LF N+ + ++ + + TP L+ Sbjct: 311 FQQKQEKTEMGLPFLSHIPFLGTLFTNTAEHTDKRVLIVFITPKLI 356 >gi|88861010|ref|ZP_01135645.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas tunicata D2] gi|88816938|gb|EAR26758.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas tunicata D2] Length = 659 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 3/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ +A P +T + + A G + Y +SS GAT+V + L T Sbjct: 497 LSALEQENKAEIIASPRITTANQKKARIEQGTEIPYVQAASS-GATTVEFKKAVLSLEVT 555 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + ++ L + P + G+ + ++ T V + +G TIVL G+ + Sbjct: 556 PHITPDNKVILDLVITQDTPGDTVQTPTGNAVAINTQEIRTQVLVENGQTIVLGGIYQQQ 615 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +PLL IP LGALF+ + E+ E+ I TP ++K Sbjct: 616 VINSSSKVPLLGDIPYLGALFKRTSEKTEKKELLIFVTPKILK 658 >gi|238792887|ref|ZP_04636517.1| Protein transporter HofQ [Yersinia intermedia ATCC 29909] gi|238727741|gb|EEQ19265.1| Protein transporter HofQ [Yersinia intermedia ATCC 29909] Length = 406 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G Y G ++ + + + TP +L G+I L Sbjct: 255 IASPRLVTSHQQTASIKQGSDIPYTVSRGKKGGPTIEFKEAVLGMEVTPKILRNGKITLN 314 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P + + GD + + K + T + + G TIVL G+ + Q +P+L+ Sbjct: 315 LKISQNMPGMAIKRGDSEALLIDKQEIKTQITVNDGETIVLGGIFQQKNSQGVNKVPILA 374 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP LGALF+ + E+ I TP L+ Sbjct: 375 DIPWLGALFKQDTQQQSRRELVIFITPRLI 404 >gi|283852780|ref|ZP_06370044.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] gi|283571861|gb|EFC19857.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] Length = 634 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 90/198 (45%), Gaps = 30/198 (15%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 E L AL I+ L+ PT+T + SA +G Y VS+S T+V + Sbjct: 444 LEAQLTALAEENKIKILSSPTITTMENLSAFVENGKDIPY--VSTSQNGTNVQFAHATLK 501 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVL 370 L P V+ LR++ V + + N G+ P Y+ R+ + + + G TIV+ Sbjct: 502 LEMLPHVVDGSN--LRMKIVVKDDQVDPNQGNWVQGNPPIYK-RETQSNLVVEDGDTIVI 558 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLVK-------- 420 +GL +D + G+P L IP LG F ++S +REE IFI TP +++ Sbjct: 559 SGLTRDTVTDANSGVPFLRDIPGLGWAFKAKSSDIHREEMLIFI--TPVILQEKPVAPVP 616 Query: 421 --------PVAMRDLSRP 430 PVAM SRP Sbjct: 617 PVAGVIEPPVAMAAASRP 634 >gi|113869481|ref|YP_727970.1| general secretion pathway protein D [Ralstonia eutropha H16] gi|113528257|emb|CAJ94602.1| general secretion pathway protein D [Ralstonia eutropha H16] Length = 812 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 11/199 (5%) Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 V + G ++ V +L AL ++ L+ P L + + A G Q++ T Sbjct: 510 LVQDIGGLNLGIVNKAMGLGALLRALGSNGSVNLLSTPNLITLENEEAKILIG-QNIPIT 568 Query: 298 VSS---STGATSVTT------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGD 347 S + GA SVT D G+ L P + G + ++I E S V N Sbjct: 569 TGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQESSNVVQATANLIQ 628 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ VR +T V + G IVL GL++D + +PLL IP +G LFR NR + Sbjct: 629 GPTTNVRSIETNVLVDDGQIIVLGGLIEDSYGDGVQKVPLLGDIPWIGGLFRYENKNRAK 688 Query: 408 TEIFIAATPFLVKPVAMRD 426 T + + P++++ D Sbjct: 689 TNLLVFLRPYVMRTAGAAD 707 >gi|121999034|ref|YP_001003821.1| type II and III secretion system protein [Halorhodospira halophila SL1] gi|121590439|gb|ABM63019.1| type II and III secretion system protein [Halorhodospira halophila SL1] Length = 372 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 4/183 (2%) Query: 239 VSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 V EG SV G + + L A+E R ++ P + Q+A G Q Y+ Sbjct: 164 VGEGARLSVSVGEVGERLLQLELSAMEAEGHGRVVSSPRVLTTERQAARIEQGVQIPYQE 223 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 + S GAT+V D + L TP V + L ++ V++ +G +PS + Sbjct: 224 TAES-GATAVAFQDAALSLTATPQVTEDDAVSLALR--VTKDAVGQIYEGVPSIDTQAVT 280 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + + +G TIVL G+ + + ++ ++ +P L ++P++G LFR + E+ + TP Sbjct: 281 THLRVQAGETIVLGGVREHEQRKQRQRVPWLGELPLIGWLFRQRMSEQSHHELLVFVTPR 340 Query: 418 LVK 420 LV+ Sbjct: 341 LVE 343 >gi|330815003|ref|YP_004358708.1| General secretory pathway protein D [Burkholderia gladioli BSR3] gi|327367396|gb|AEA58752.1| General secretory pathway protein D [Burkholderia gladioli BSR3] Length = 787 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 42/216 (19%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTT--- 309 +L A + L+ P L + + A G Q++ Y ++S + + + T Sbjct: 496 LLQAFSGSNDANILSTPNLVTLDNEEARIVVG-QNVPIATGSYANLTSGSNSNAFNTFDR 554 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------------IGVNAGDMPSYRVRKAD 357 D G+ LH P + G + L+I TE S V +GV P++ R Sbjct: 555 QDVGLTLHVKPQITEGGILKLQIYTEDSSVVPSATSSGSSSSQVGV-----PTFNKRSIQ 609 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 +TV +G IVL GL++D+ Q +PLL IP +G LFR+ R +T + + Sbjct: 610 STVLCDNGEIIVLGGLMQDNYQVGNNKVPLLGDIPWIGQLFRSEAKQRSKTNLMV----- 664 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 ++PV + D E +A NR + I G Sbjct: 665 FLRPVILSD----------EATTQAVTANRYDYIQG 690 >gi|262393141|ref|YP_003284995.1| MSHA biogenesis protein MshL [Vibrio sp. Ex25] gi|262336735|gb|ACY50530.1| MSHA biogenesis protein MshL [Vibrio sp. Ex25] Length = 530 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 108/254 (42%), Gaps = 31/254 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------GGDFS 246 QV L+ I EV + Q G S +S G S S + + GG + Sbjct: 255 QVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSVVVNRPASALPPLDAIGTLLGGQTN 314 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG-- 303 V + +F VL + + L+ P +TA + Q + G + T +SS+ G Sbjct: 315 V--TISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNG 372 Query: 304 -------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------D 347 +T G+ L TP + + G + L + EVSE V +N G Sbjct: 373 ENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVSEEVKKLNLGGEFQNIQ 432 Query: 348 MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P + +R++D+ + G +V+ GL+K ++L +P L +P LG LFRN Sbjct: 433 LPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVT 492 Query: 406 EETEIFIAATPFLV 419 E+TE+ I P +V Sbjct: 493 EKTELVILLKPTVV 506 >gi|197335785|ref|YP_002155116.1| general secretion pathway protein D [Vibrio fischeri MJ11] gi|197317275|gb|ACH66722.1| general secretion pathway protein D [Vibrio fischeri MJ11] Length = 548 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 21/186 (11%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA--------- 304 +F+ VL ++ + L+ P +TA + Q A G Y T VSS TG+ Sbjct: 340 NFQAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGRDEYYVTEVSSVTGSGDNSNASPE 399 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD--------MPSYRV 353 ++T G+ L TP + G + L + +V V ++ GD + + Sbjct: 400 VTLTPFFSGISLDVTPQIDDKGNVMLHVHPSVIDVENEVKEIDLGDVGGVLKLPLAKSSI 459 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R++D+ + SG +V+ GL+K +PLL +P LG LFRN ++TE+ I Sbjct: 460 RESDSVIRAKSGDVVVIGGLMKSQTVDQVSKVPLLGDVPALGHLFRNVSQLTQKTELVIL 519 Query: 414 ATPFLV 419 P +V Sbjct: 520 LKPTVV 525 >gi|197104120|ref|YP_002129497.1| type II secretory pathway protein D [Phenylobacterium zucineum HLK1] gi|196477540|gb|ACG77068.1| type II secretory pathway protein D [Phenylobacterium zucineum HLK1] Length = 686 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 11/188 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F V++A++ TA L+ P++ + Q A+ G Q + T S GA ++ Sbjct: 462 FGLVINAVKSDTASNLLSTPSVMTLDNQPATILVG-QEVPITTGESLGANNENPFRTIAR 520 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGT 367 + GV L TP + + G I L ++ EVS V G + + + R+ +TTV + G Sbjct: 521 QNVGVQLEVTPQINAGGTITLFLRQEVSA-VAGPISANFTELVLNKREIETTVNVDDGEI 579 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRD 426 IVL GLL D + E P+L IP LGALFR + + +T + + P +V A R Sbjct: 580 IVLGGLLSQDERASVEKTPVLGDIPGLGALFRGTNKAKTKTNLMVFIRPKIVGDAAGARA 639 Query: 427 LSRPDDHY 434 ++ P Y Sbjct: 640 VTGPKYEY 647 >gi|59710966|ref|YP_203742.1| MSHA biogenesis protein MshL [Vibrio fischeri ES114] gi|59479067|gb|AAW84854.1| MSHA biogenesis protein MshL [Vibrio fischeri ES114] Length = 546 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 21/186 (11%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA--------- 304 +F+ VL ++ + L+ P +TA + Q A G Y T VSS TG+ Sbjct: 338 NFQAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGRDEYYVTEVSSVTGSGDNSNASPE 397 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD--------MPSYRV 353 ++T G+ L TP + G + L + +V V ++ GD + + Sbjct: 398 VTLTPFFSGISLDVTPQIDDKGNVMLHVHPSVIDVENEVKEIDLGDVGGVLKLPLAKSSI 457 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R++D+ + SG +V+ GL+K +PLL +P LG LFRN ++TE+ I Sbjct: 458 RESDSVIRAKSGDVVVIGGLMKSQTVDQVSKVPLLGDVPALGHLFRNVSQLTQKTELVIL 517 Query: 414 ATPFLV 419 P +V Sbjct: 518 LKPTVV 523 >gi|330831366|ref|YP_004394318.1| MSHA biogenesis protein MshL [Aeromonas veronii B565] gi|328806502|gb|AEB51701.1| MSHA biogenesis protein MshL [Aeromonas veronii B565] Length = 557 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 35/230 (15%) Query: 224 SGPSKSFAADFGGK-FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S P++ F+A GG F G+F+V ++ L+ + TL+ P +TA + Sbjct: 326 STPNQIFSALGGGAGFKISDGNFNV-----------AVNLLKTQGDVNTLSSPRVTATNN 374 Query: 283 QSASFTSGGQHLY-----------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 Q A G Y T + T +T G+ L TP + G++ L Sbjct: 375 QKAVIKVGTDEYYVTNASTTITTTSTGTDKTPNVELTPFFSGIALDVTPQIDEEGKVLLH 434 Query: 332 IQ-----TEVSEPVI--GVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I TE VI G + G + +R++DT V+ +G IV+ GL+K D Q+ Sbjct: 435 IHPSVIDTEEQNKVIDMGTSGGKLQLPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQE 494 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSR 429 + +PLL IP +G F N R + ++ E+ I P +V K +L R Sbjct: 495 IVSKVPLLGDIPWVGEAFTNRRESTKKVELVIMLKPTVVEKDTWQNELQR 544 >gi|304310058|ref|YP_003809656.1| General secretion pathway D protein, outer membrane secretin [gamma proteobacterium HdN1] gi|301795791|emb|CBL43990.1| General secretion pathway D protein, outer membrane secretin [gamma proteobacterium HdN1] Length = 721 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 22/195 (11%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGGQH 293 GG + G +D F +L A+ A+ L+ P++ + GQ+ F +G Q Sbjct: 482 GGHRNSAGKVD---FGLILQAVNTASNTNVLSTPSIMTLDNEEAEILVGQNVPFITGNQL 538 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSY 351 Y S + +V D G+ L P V + I LR+ E S V D+ + Sbjct: 539 SY---SGTNPFQTVERKDVGLNLKVIPQVNAGDTISLRVTQEASSIADSSNVKTTDVITN 595 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R +TT+ G IVL GL++D + + +PLL IP++GALFR++ +E+ + Sbjct: 596 K-RLINTTILASDGQVIVLGGLMEDTLSDAVQKVPLLGDIPLIGALFRSTSKVQEKRNLL 654 Query: 412 IAATPFLVKPVAMRD 426 + ++P +RD Sbjct: 655 L-----FLRPTVIRD 664 >gi|322418906|ref|YP_004198129.1| type IV pilus secretin PilQ [Geobacter sp. M18] gi|320125293|gb|ADW12853.1| type IV pilus secretin PilQ [Geobacter sp. M18] Length = 922 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 22/244 (9%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGD-- 244 A E QV ++ I E + +G Q +++ S S S FGG VS G Sbjct: 685 APEKQVMIEARIVEATSTFTRDLGVQWALSYKDSSASIANINSAETTFGG-VVSTAGPGT 743 Query: 245 ---------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 S + + + A ++ ++ P + ++ ++A + G Y Sbjct: 744 SGSGGLGLGMSFGKLTSNVQLDMRIAAAATIGQVKIISTPKVVTLNNKAAKISQGQSIPY 803 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 +T S+ T + + L TP + + G + ++I+ + P G P ++ Sbjct: 804 QTTSAEGTKTEFV--EAALTLEVTPHITADGSVSMKIKASNNSP----GTGTPPPINKKE 857 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A T + + +G T V+ G+ D + G+P L+ IP+LG LF+++ + +TE+ I T Sbjct: 858 ATTELVVSNGDTTVIGGIYVDSDTESDTGVPFLADIPLLGWLFKSNTKQKTKTELLIFIT 917 Query: 416 PFLV 419 P +V Sbjct: 918 PKIV 921 >gi|152991308|ref|YP_001357030.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2] gi|151423169|dbj|BAF70673.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2] Length = 495 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 57/249 (22%), Positives = 111/249 (44%), Gaps = 32/249 (12%) Query: 195 QVTLKVTIAEVRRDILKQIG-----FQHSITGSSSGPSKSFAA----DFGGKFVSEGGDF 245 QV ++ I EV+ + + +G F +TGS S + +FG G +F Sbjct: 240 QVMIEAKIIEVQYNDDQTVGIDWSKFSLDVTGSRSAQQSRSGSTKLNNFGTPDYFIGYNF 299 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TG 303 S++G+LD L++ ++ L+ P + ++ Q A G Q Y+ + TG Sbjct: 300 SMQGLLD---------FLKKYGKVKILSNPKVMTLNNQPAIINVGDQLSYRYENGVVITG 350 Query: 304 ATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDM--PSY 351 +V Y G+ L+ P + I ++I + + IG P Sbjct: 351 GNAVANQTYSIGQTFVGISLYVIPEITENSDIIMKINPVTSALKNENIGYETNRTLPPDI 410 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+++ + V++ G I++ GL+ + + +P+L IPI+G F++ + +++E+F Sbjct: 411 RLKQVTSIVKVKDGQKILIGGLISKNYSKQFNKVPVLGDIPIIGYAFKSKNNSVKKSELF 470 Query: 412 IAATPFLVK 420 + P +VK Sbjct: 471 VLIIPKIVK 479 >gi|189424703|ref|YP_001951880.1| type IV pilus secretin PilQ [Geobacter lovleyi SZ] gi|189420962|gb|ACD95360.1| type IV pilus secretin PilQ [Geobacter lovleyi SZ] Length = 891 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/254 (24%), Positives = 110/254 (43%), Gaps = 22/254 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSS-GPSKSFAADFGG- 236 +K++ L++ E QV ++ I E + +G I GS+S S +FGG Sbjct: 640 RKILASLDVP-EKQVMIEARIVEASSTFTQSLGVNWGIHYRDGSASIAGINSMDTNFGGL 698 Query: 237 --KFVSEGGDFSVKGVLDRFSFETV---------LHALERATAIRTLAEPTLTAISGQSA 285 + G G SF T+ L+A A +R ++ P + ++ +SA Sbjct: 699 ASTAPTSSGVSGSPGAAAGISFGTLSSNIKLDLRLNAAVSAGLVRIVSTPRVATLNHKSA 758 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 T G Q Y +S T + + L TP + G + ++I + P + Sbjct: 759 KITQGQQIPYTASTSDKIETKFV--EAALALEVTPHINPNGTVVMKIDAKNDSPG---ST 813 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 G+ P+ ++A T + L G T V+ G+ + +G+P L+ +P LG LF+++ R Sbjct: 814 GNPPAINKKQATTEMMLRDGETTVIGGIFVESESNNDDGVPFLADVPWLGGLFKSNETKR 873 Query: 406 EETEIFIAATPFLV 419 E+ I TP ++ Sbjct: 874 NRNELLIFITPRII 887 >gi|15597065|ref|NP_250559.1| secretion protein XqhA [Pseudomonas aeruginosa PAO1] gi|218892174|ref|YP_002441041.1| secretion protein XqhA [Pseudomonas aeruginosa LESB58] gi|9947858|gb|AAG05257.1|AE004613_2 secretion protein XqhA [Pseudomonas aeruginosa PAO1] gi|218772400|emb|CAW28182.1| secretion protein XqhA [Pseudomonas aeruginosa LESB58] Length = 776 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 26/252 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242 Q+ ++ I E+ +I +G Q ++ FA D G GK +E Sbjct: 352 QLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFA-DSGLSIGTLLGALQAGKPPAEL 410 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D ++ G+ R F ++ AL R + L+ P+L + Q A G ++T S +T Sbjct: 411 PDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 469 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351 A T+V D GV L TP + + L I+ E+S + A D+ + Sbjct: 470 SASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVTN 529 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R +TV G IVL GL++DD+Q+ +PLL IP +G LFR+SR R + + Sbjct: 530 K-RSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588 Query: 412 IAATPFLVKPVA 423 + P +V+ A Sbjct: 589 VFLRPSIVRDAA 600 >gi|56476683|ref|YP_158272.1| fimbrial type-IV assembly protein PilQ [Aromatoleum aromaticum EbN1] gi|56312726|emb|CAI07371.1| fimbrial type-IV assembly protein PilQ [Aromatoleum aromaticum EbN1] Length = 721 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 1/160 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE R ++ P + + A G + Y +SS GA S+ + L Sbjct: 556 LSALESDGRGRIVSSPRVLTANQVEAVIEQGTKIPYPEKTSS-GAASIKFEKAVLSLKVK 614 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + GR+ L + P + P+ + T V + +GGT+V+ G+ +++ Sbjct: 615 PQITPEGRVQLFVLVNKDRPDFARSVEGTPTVVTKNIQTEVLVENGGTVVIGGIYEEEET 674 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IPLL ++P++GALFRN+ N + +E+ I TP +V Sbjct: 675 DSVTRIPLLGEVPLVGALFRNTIKNSKRSELLIFITPRIV 714 >gi|254229258|ref|ZP_04922676.1| pilus (msha type) biogenesis protein mshl, putative [Vibrio sp. Ex25] gi|151938182|gb|EDN57022.1| pilus (msha type) biogenesis protein mshl, putative [Vibrio sp. Ex25] Length = 547 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 108/254 (42%), Gaps = 31/254 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------GGDFS 246 QV L+ I EV + Q G S +S G S S + + GG + Sbjct: 272 QVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSVVVNRPASALPPLDAIGTLLGGQTN 331 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG-- 303 V + +F VL + + L+ P +TA + Q + G + T +SS+ G Sbjct: 332 V--TISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNG 389 Query: 304 -------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------D 347 +T G+ L TP + + G + L + EVSE V +N G Sbjct: 390 ENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVSEEVKKLNLGGEFQNIQ 449 Query: 348 MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P + +R++D+ + G +V+ GL+K ++L +P L +P LG LFRN Sbjct: 450 LPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVT 509 Query: 406 EETEIFIAATPFLV 419 E+TE+ I P +V Sbjct: 510 EKTELVILLKPTVV 523 >gi|86157073|ref|YP_463858.1| type II and III secretion system protein, secretin [Anaeromyxobacter dehalogenans 2CP-C] gi|85773584|gb|ABC80421.1| type II and III secretion system protein, secretin [Anaeromyxobacter dehalogenans 2CP-C] Length = 882 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 7/169 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F+ L ALE ++T++ P + I + A+ G + S+S + T + Sbjct: 705 FNLNLRLSALENNGVVKTISSPKIATIDNKEATIGQGISIPFSQTSAS--GVNTTFVEAK 762 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + L TP V + G I L+I+ + P + G N PS R+A+T V + G T V+ Sbjct: 763 LELKVTPHVTADGSILLKIKATNNAPNSSLTGSNG--QPSISKREAETEVLVKDGETTVI 820 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ +P LSKIP+LG FR+ + TE+ I TP ++ Sbjct: 821 GGIYTRSTASKTAAVPFLSKIPLLGFFFRSDTNTDDHTELLIFITPRIL 869 >gi|82703023|ref|YP_412589.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411088|gb|ABB75197.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 789 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 64/261 (24%), Positives = 115/261 (44%), Gaps = 35/261 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAA-DF------GGKFVSEGGD-- 244 QV ++ IAE+ D + G Q +++ ++ G ++ F +F GG +S + Sbjct: 452 QVYIEALIAEITADRAAEFGIQWQNLSNAAQGGTQVFGGTNFNAGTAGGGSIISTAQNPI 511 Query: 245 ----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 ++ G+ + T++ ALE L+ PTL ++ + A Sbjct: 512 ANAASGLTIGIMNGLVTAIPGIGPVLNIHTLIRALETDANANILSTPTLLTLNNEEARII 571 Query: 289 SG-------GQHLYKTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 G GQ + + T +V+ D G+ L P + + ++I EVS V Sbjct: 572 IGQNVPIPTGQFIPPVGGAVTSPFQTVSRQDVGLSLKIKPLISEGNTVRVQIFQEVSSVV 631 Query: 341 IG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 G VNA + R ++TV + G +VL GL++D + E IPL+ IP+ G LF Sbjct: 632 PGTVNATNGLITNKRSIESTVLVDDGQILVLGGLMQDSVNDSVERIPLVGAIPLFGQLFS 691 Query: 400 NSRFNREETEIFIAATPFLVK 420 ++ +R +T + + P L++ Sbjct: 692 YNKRSRNKTNLMVFLRPTLMR 712 >gi|238783680|ref|ZP_04627700.1| General secretion pathway protein D [Yersinia bercovieri ATCC 43970] gi|238715393|gb|EEQ07385.1| General secretion pathway protein D [Yersinia bercovieri ATCC 43970] Length = 661 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 9/219 (4%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 ++ + AL + LA P++ + A F G Q + S+ T AT S++ Sbjct: 426 NWNGLFTALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 484 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGG 366 G++L P + + L I+ EVS N + R + V + SG Sbjct: 485 QSVGIMLKVKPQINKGDSVLLEIRQEVSSVADSSNTNTNNLGFIFNKRAINNAVLVKSGE 544 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T+V+ GLL + + + IPLL IP +G LFR S+ +++ + + P +++ Sbjct: 545 TVVVGGLLDEKLSKTVNKIPLLGDIPFIGGLFRQSKEKVDKSNLILFIKPTILRETNDYS 604 Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 + D H +D N++Y A+E++ +Y Sbjct: 605 VVTIDKHTKYKDSNSQENTINNNRLYHDLLATEIKSDSY 643 >gi|330863522|emb|CBX73638.1| general secretion pathway protein D [Yersinia enterocolitica W22703] Length = 577 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 9/156 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 +++ + AL + LA P++ + A F G Q + S+ T AT S++ Sbjct: 416 NWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 474 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366 GV+L P + + L I+ EVS VNA ++ S + R + V + SG Sbjct: 475 QSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSVFNKRVVNNAVLVKSGE 534 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 T+V+ GLL I ++ +PLL IP +G LFR S+ Sbjct: 535 TVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQSK 570 >gi|302038138|ref|YP_003798460.1| putative general secretion pathway protein D [Candidatus Nitrospira defluvii] gi|300606202|emb|CBK42535.1| putative General secretion pathway protein D [Candidatus Nitrospira defluvii] Length = 765 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 68/296 (22%), Positives = 115/296 (38%), Gaps = 54/296 (18%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 I+D VEL+E + + R + +V V + EV R + + Sbjct: 292 IRDQPEKVELAEKIIQANDRE------------------DSEVLFDVEVLEVNRTVDQTY 333 Query: 214 GFQHSITGSSS----GPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATA 268 G + ++ G + + A D +F L + L ++ T Sbjct: 334 GLSYPKQIGAALIPPGFTGAIAGDIAQQFTYRNLASLGQDSYLFKLPTNVQLDFFKQVTD 393 Query: 269 IRTLAEPTLTAISGQSASFTSG--------------GQHLYKTVSSSTGATSVTTHDYGV 314 +TLA P + ++ + A G GQ V +++ TS+ D GV Sbjct: 394 AKTLAAPKVRVLNNKKAEVNIGDKQPILLSTTNVLPGQAATGAVPTTSTVTSIEFRDTGV 453 Query: 315 VLHFTPTVLSPGRIGLRIQTEV-----------SEPVIGVNAGDMPSYRVRKADTTVELP 363 L P + + L+++ EV S P+ G+ R A+T + + Sbjct: 454 KLTVEPNIHLANELALKMKIEVIRLGDVVLLQQSPPITQFKFGN------RSAETMLNVR 507 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G TIVL GLL+++ ++ K IP L IP LG L + + R TE+ + TP +V Sbjct: 508 DGETIVLGGLLQEEDRRTKVTIPWLGDIPFLGNLLSSFKTQRVTTEVILTITPHIV 563 >gi|54306408|gb|AAV33391.1| type IV pilus biogenesis secretin PilQ [Moraxella catarrhalis 7169] gi|326559645|gb|EGE10059.1| type IV pilus secretin PilQ [Moraxella catarrhalis 7169] gi|326567677|gb|EGE17783.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC1] gi|326568688|gb|EGE18759.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC7] Length = 473 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/249 (22%), Positives = 109/249 (43%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGG------ 243 +QV ++ I + +++G G + G S+ + V+ GG Sbjct: 229 EQVMIEARIVSANENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMWQEGVAAGGHQNSHL 288 Query: 244 --DFSVKGVLDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D V + R +F + L A++ ++ P + Q+A +SG Sbjct: 289 NVDLGVDNAMGRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGL 348 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 Q Y+ + S GA++ + ++L TP + G+IGL++ + PV + G + + Sbjct: 349 QIPYQETTHS-GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL--GHI-AI 404 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + +T V + G T+VL G+ + + +P L +P+LG LFR+ +++E+ Sbjct: 405 QEDAIETNVIIEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELL 464 Query: 412 IAATPFLVK 420 I TP LV+ Sbjct: 465 IFITPKLVR 473 >gi|197121096|ref|YP_002133047.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. K] gi|196170945|gb|ACG71918.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. K] Length = 887 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 7/169 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F+ L ALE ++T++ P + I + A+ G + S+S + T + Sbjct: 710 FNLNLRLSALENNGVVKTISSPKIATIDNKEATIGQGISIPFSQTSAS--GVNTTFVEAK 767 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + L TP V + G I L+I+ + P + G N PS R+A+T V + G T V+ Sbjct: 768 LELKVTPHVTADGSILLKIKATNNAPNSSLTGSNG--QPSISKREAETEVLVKDGETTVI 825 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ +P LSKIP+LG FR+ + TE+ I TP ++ Sbjct: 826 GGIYTRSTASKTASVPFLSKIPLLGFFFRSDTNTDDHTELLIFITPRIL 874 >gi|88705191|ref|ZP_01102902.1| GSP-D family Protein [Congregibacter litoralis KT71] gi|88700281|gb|EAQ97389.1| GSP-D family Protein [Congregibacter litoralis KT71] Length = 728 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 4/160 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE A +++P + Q A+ SG + ++ ++S GAT+V + + L T Sbjct: 561 LSALEAAGKSEVVSQPKVITGDKQPATIKSGTEIPFQQAAAS-GATAVQFKEAVLKLDVT 619 Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + RI L + Q V + V G +P+ + T V + +G T+VL G+ + Sbjct: 620 PNITPDDRILLDLVINQDSVGDLVPSGQGGLIPAIDTTQLTTQVLVGNGETVVLGGVFRT 679 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + + +P +P +GALFRN R +TE I TP Sbjct: 680 ENLETTSKVPFFGDLPYVGALFRNESSQRTKTETLIFITP 719 >gi|330940238|gb|EGH43375.1| general secretion pathway protein D [Pseudomonas syringae pv. pisi str. 1704B] Length = 295 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 9/171 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHD 311 + + L ALE + L+ P+L ++ Q A G S +T T++++ + Sbjct: 91 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVE 150 Query: 312 Y---GVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSG 365 Y GV+L P + G + + IQ +VS G A P R T V SG Sbjct: 151 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTDTTGNGANGNPRISTRSVATQVAAQSG 210 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP Sbjct: 211 QTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITP 261 >gi|226951776|ref|ZP_03822240.1| general secretion pathway protein [Acinetobacter sp. ATCC 27244] gi|226837491|gb|EEH69874.1| general secretion pathway protein [Acinetobacter sp. ATCC 27244] Length = 735 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 11/176 (6%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------T 305 R ++ ++ AL+ T L+ P++ + + A G + T S +T T Sbjct: 463 RRAYGALIQALKANTKSNFLSTPSIVTMDNEEAYIVVGQNVPFVTGSVATQGNSTVNPYT 522 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELP 363 +V D G+ L P + G I L ++ EVS +P G A D+ + + R T+V Sbjct: 523 TVERKDVGITLKVVPHIGEGGSIRLEVEQEVSNVQPNRG-QATDLVTSK-RAIKTSVLAD 580 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T++L GL+ DD ++ IP+L IP LG LFR + ++ + + P +V Sbjct: 581 HGQTVILGGLISDDTNLTRQSIPVLGDIPYLGRLFRADTRSNDKRNLLVFIHPTIV 636 >gi|254516135|ref|ZP_05128195.1| type IV pilus secretin PilQ [gamma proteobacterium NOR5-3] gi|219675857|gb|EED32223.1| type IV pilus secretin PilQ [gamma proteobacterium NOR5-3] Length = 732 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 6/187 (3%) Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 D G + G F+V + L ALE A +++P + Q A+ SG + Sbjct: 540 DLGSGSATSG--FAVGFTSNSLYLTAELSALEAAGKSEVVSQPKVITGDKQPATIKSGTE 597 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMP 349 ++ ++S GAT+V + + L TP + RI L + Q V + V G +P Sbjct: 598 IPFQQAAAS-GATAVQFKEAVLKLDVTPNITPDDRILLDLVINQDSVGDLVPSGQGGLIP 656 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + T V + +G T+VL G+ + + + +P +P +GALFRN R +TE Sbjct: 657 AIDTTQLTTQVLVGNGETVVLGGVFRTENLETTSKVPFFGDLPYVGALFRNESNQRTKTE 716 Query: 410 IFIAATP 416 I TP Sbjct: 717 TLIFITP 723 >gi|294649022|ref|ZP_06726469.1| general secretion pathway protein [Acinetobacter haemolyticus ATCC 19194] gi|292825090|gb|EFF83846.1| general secretion pathway protein [Acinetobacter haemolyticus ATCC 19194] Length = 735 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 11/176 (6%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------T 305 R ++ ++ AL+ T L+ P++ + + A G + T S +T T Sbjct: 463 RRAYGALIQALKANTKSNFLSTPSIVTMDNEEAYIVVGQNVPFVTGSVATQGNSTVNPYT 522 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELP 363 +V D G+ L P + G I L ++ EVS +P G A D+ + + R T+V Sbjct: 523 TVERKDVGITLKVVPHIGEGGSIRLEVEQEVSNVQPNRG-QATDLVTSK-RAIKTSVLAD 580 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T++L GL+ DD ++ IP+L IP LG LFR + ++ + + P +V Sbjct: 581 HGQTVILGGLISDDTNLTRQSIPVLGDIPYLGRLFRADTRSNDKRNLLVFIHPTIV 636 >gi|209696322|ref|YP_002264253.1| general secretion pathway protein D [Aliivibrio salmonicida LFI1238] gi|208010276|emb|CAQ80608.1| general secretion pathway protein D [Aliivibrio salmonicida LFI1238] Length = 675 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 20/218 (9%) Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 FQ + T + G + A+ GG +G S+ + ++ A+ + L+ Sbjct: 405 FQRNETTTEEGDYGALASALGG---VQGAAVSIM----MGDWTALITAVSTDSNSNILSS 457 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRI 328 P++T + ASF G + + S++G+ +V + G+ L P + + Sbjct: 458 PSITVMDNGEASFIVG-EEVPVLTGSTSGSNNENPFQTVERKEVGIKLKVVPQINEGNSV 516 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS V+G N + R+ T+V + G +VL GL+ + + + +P L Sbjct: 517 RLDIEQEVSN-VLGANGAVDVRFAKRQLSTSVMVEDGKMLVLGGLIDERAMESESKVPFL 575 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IPILG LF+++ E+ + I +KP +RD Sbjct: 576 GDIPILGYLFKSTSTQVEKKNLMI-----FIKPTIIRD 608 >gi|88799604|ref|ZP_01115180.1| Type II secretory pathway, component PulD [Reinekea sp. MED297] gi|88777689|gb|EAR08888.1| Type II secretory pathway, component PulD [Reinekea sp. MED297] Length = 519 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 35/262 (13%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFGGKFVSE----GGDFSV 247 + QV ++ I EV D + G S + G + A G +S GG F++ Sbjct: 250 QKQVIIEAKIVEVTLDQEYRSGINWSFFNDNFGSGNNSAGIGLDGNAISGAGGVGGVFNL 309 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----- 302 LD F+ ++L L+ ++ L+ P ++ I+ Q A G + T+ S T Sbjct: 310 SLSLDNFT--SMLQLLDHQGDVQVLSSPRVSTINNQKAVIKVGTDEFFATIQSITTEVND 367 Query: 303 -GATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAG 346 + SVTT G+ L TP + + L ++ V+E V +G + Sbjct: 368 DDSDSVTTVPAFELEQFFSGIALDVTPQIADDDSVTLHVRPTVTEVVEDTKTLDVGGRSY 427 Query: 347 DMP-SY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P +Y +R++D+ + SG +V+ GLL+ G+P IP++ LF R + Sbjct: 428 QLPLAYSNIRESDSIIRAQSGQIVVIGGLLQQKQDLGTTGLPWFQTIPVIRGLFAQDRES 487 Query: 405 REETEIFIAATPFLVKPVAMRD 426 ++++E+ I L+KP D Sbjct: 488 QQKSELVI-----LLKPTVYND 504 >gi|319791917|ref|YP_004153557.1| type IV pilus secretin pilq [Variovorax paradoxus EPS] gi|315594380|gb|ADU35446.1| type IV pilus secretin PilQ [Variovorax paradoxus EPS] Length = 713 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 2/137 (1%) Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Q+ + G+ + ++S+GATS++ + L TP + G I L + +VS+ G Sbjct: 572 QTKALIEQGEEIPYQQATSSGATSISFRKAVLKLEVTPQITPEGNIILTL--DVSKDARG 629 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 VN P+ + T V + +GGT+V+ G+ + + +P+L +IP +GALFR Sbjct: 630 VNTSAGPAINTKHVQTEVLVENGGTVVIGGIFELTETNDESRVPVLGEIPYMGALFRKRE 689 Query: 403 FNREETEIFIAATPFLV 419 +TE+ + TP ++ Sbjct: 690 RVANKTEMLVFITPKMI 706 >gi|297537339|ref|YP_003673108.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301] gi|297256686|gb|ADI28531.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301] Length = 608 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 74/314 (23%), Positives = 133/314 (42%), Gaps = 55/314 (17%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--VSEGGD--FS 246 + + QV ++ TI EV + + G S GS F G + V+ + S Sbjct: 312 SAKKQVLIEATIVEVTLNDGYKAGIDWSRLGSLGSAGFVFKQALGPQLGAVNSAANVTLS 371 Query: 247 VKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G++ ++ + + LE+ + L+ P L ++ Q+A +Y TV S Sbjct: 372 SSGIIAGYTNGNRGILSSVQLLEQFGNTKVLSSPKLMVLNNQTAVLKVVDNLVYFTVQSQ 431 Query: 302 ----------TGATSVTTHD----YGVVLHFTPTVLSPGRIGLRIQTEVS---------E 338 T SVTT GVV+ TP + G + + ++ ++ Sbjct: 432 ISQSASGVAGTNLQSVTTTPNTVPVGVVMSVTPQINDTGNVNINVRPTITSLIRYVPDPN 491 Query: 339 PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 P I + +P R R+ ++ +++ SG VL GL++D+I+ E +P LSK+P +G Sbjct: 492 PQIQKSPDFQGIPEIRTREMESLLQISSGNIAVLGGLMQDEIKNSTEAVPGLSKVPGVGK 551 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 +F+ + ++TE+ I P ++ + S+E D A + K Y P + Sbjct: 552 VFQGKNDSNQKTELVIFLRPTVIP------------NASLESDELAHY-----KQYLPTQ 594 Query: 457 ----ASEVEGQNYK 466 ASE E +N + Sbjct: 595 ALERASEAEAENER 608 >gi|242237793|ref|YP_002985974.1| outer membrane porin HofQ [Dickeya dadantii Ech703] gi|242129850|gb|ACS84152.1| type IV pilus secretin PilQ [Dickeya dadantii Ech703] Length = 426 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + +A P L Q+AS G + Y+ S ++G+TS+ + + + T Sbjct: 256 LMALEQEDEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT 315 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P +L G I L + + P I G+M + ++ T V + G TIVL G+ + Sbjct: 316 PRILQGGFITLNLLISQNMPGRSIKQGEGEMLAIDKQEIQTQVTVKDGETIVLGGIFQQQ 375 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P L +P +G LF +S E+ I TP L++ Sbjct: 376 KNRTERKVPGLGALPGIGRLFSSSDRQNTRRELVIFITPTLIQ 418 >gi|221069105|ref|ZP_03545210.1| general secretion pathway protein D [Comamonas testosteroni KF-1] gi|220714128|gb|EED69496.1| general secretion pathway protein D [Comamonas testosteroni KF-1] Length = 793 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 15/167 (8%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATS-----VTTH---DYGVVLHFTPTV 322 L+ P L + + AS G + T S ++T TS TT+ D G +L P + Sbjct: 540 LSTPNLMTLDNEEASIMVGENVPFPTGSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQI 599 Query: 323 LSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 G I + + E S G NA + R ++ V + G +VL GL+ D+ Q Sbjct: 600 NENGTIKMAVYQENSAVKQGTANAQSGATTTKRSIESNVLVEDGAIVVLGGLIADEYSQS 659 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +E +PLL IP+LG LFRN+ R++T + + FL +P +RD S Sbjct: 660 QERVPLLGDIPLLGNLFRNTSRARKKTNLMV----FL-RPTVLRDAS 701 >gi|331005872|ref|ZP_08329224.1| Helix-turn-helix, AraC type [gamma proteobacterium IMCC1989] gi|330420316|gb|EGG94630.1| Helix-turn-helix, AraC type [gamma proteobacterium IMCC1989] Length = 659 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 24/244 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--EGGD-------F 245 QV ++ I E+ D+ +++G + + ++G S + G + E GD F Sbjct: 359 QVLVEAIIVEITNDLSRELGVEWAAYKQNNGFIGSRNSATLGTLATAIESGDGIAGAPNF 418 Query: 246 SVKGV-----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + +G+ + F +++ + + L+ P+L A + G + T S Sbjct: 419 TGQGLGFFGNSNGVDFAGLINFFQGSAEANVLSTPSLLTTDNNEAEISIGQNVPFVTGSF 478 Query: 301 STGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 +T + ++ D G+ L TP + + L IQ EVS A D+ + Sbjct: 479 TTSSGDSTDPFQTIEREDVGISLKVTPQINEGDTVNLEIQQEVSSISNSSQASDVITNE- 537 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN--SRFNREETEIF 411 RK T V G TI+L GL+ ++++Q ++ +P L IP+LG LFRN + +++ +F Sbjct: 538 RKISTKVIAQDGETIILGGLISNEVRQDEQKVPFLGDIPLLGGLFRNDSTTSSKQNLMVF 597 Query: 412 IAAT 415 + AT Sbjct: 598 LRAT 601 >gi|220915798|ref|YP_002491102.1| type IV pilus secretin PilQ [Anaeromyxobacter dehalogenans 2CP-1] gi|219953652|gb|ACL64036.1| type IV pilus secretin PilQ [Anaeromyxobacter dehalogenans 2CP-1] Length = 887 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 7/169 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F+ L ALE ++T++ P + I + A+ G + S+S + T + Sbjct: 710 FNLNLRLSALENNGVVKTISSPKIATIDNKEATIGQGISIPFSQTSAS--GVNTTFVEAK 767 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + L TP V + G I L+I+ + P + G N PS R+A+T V + G T V+ Sbjct: 768 LELKVTPHVTADGSILLKIKATNNAPNSSLTGSNG--QPSISKREAETEVLVKDGETTVI 825 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ +P LSKIP+LG FR+ + TE+ I TP ++ Sbjct: 826 GGIYTRSTASKTASVPFLSKIPLLGFFFRSDTNTDDHTELLIFITPRIL 874 >gi|217969316|ref|YP_002354550.1| type II and III secretion system protein [Thauera sp. MZ1T] gi|217506643|gb|ACK53654.1| type II and III secretion system protein [Thauera sp. MZ1T] Length = 625 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 21/187 (11%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------------GATSV 307 L LE ++ L+ P L+ ++ Q+A + +Y V S+T T+ Sbjct: 358 LELLETFGTVKVLSSPRLSVLNNQTAMLKVVEEVVYFLVDSTTTEYDDRKQARISATTTP 417 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMPSYRVRKADT 358 + G+V+ TP + + G I L ++ +S P +G +P R R+ ++ Sbjct: 418 QSVSVGMVMSVTPQISADGDITLNVRPTISGISGFKDDPNPSLGDIPNRVPQIRTREIES 477 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + L SG VL GL++D I IPL +P++G LF N TE+ I P L Sbjct: 478 MLRLRSGEVAVLGGLMEDRIDHDTGRIPLFGDLPVVGELFTRRDNNVRRTELLIFLRPLL 537 Query: 419 VKPVAMR 425 + MR Sbjct: 538 IDEPGMR 544 >gi|312958540|ref|ZP_07773060.1| type IV pilus biogenesis protein [Pseudomonas fluorescens WH6] gi|311287083|gb|EFQ65644.1| type IV pilus biogenesis protein [Pseudomonas fluorescens WH6] Length = 460 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 4/191 (2%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 PS F D G + G + + D + L A+E+ +++P + ++A Sbjct: 262 PSSPFV-DLGSLTGTSG--LGIAYITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETA 318 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 G + Y+ S+S GATSV+ + + L TP + + + ++ EP Sbjct: 319 RILKGTEIPYQE-STSQGATSVSFKEASLSLEVTPQITPDNHVIMVVKVTKDEPDYLNKL 377 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 D+P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR Sbjct: 378 NDVPPIKKNEVNAKVLVKDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVLAE 437 Query: 406 EETEIFIAATP 416 +++E+ + TP Sbjct: 438 KKSELLVFLTP 448 >gi|163751641|ref|ZP_02158861.1| type IV pilus biogenesis protein PilQ [Shewanella benthica KT99] gi|161328467|gb|EDP99622.1| type IV pilus biogenesis protein PilQ [Shewanella benthica KT99] Length = 681 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ +A P + S Q A++ G + SSS+GA Sbjct: 502 FHVARLADGTILDMELSALEQENRGEIIASPRIVT-SNQKAAYIEQGVEIPYIESSSSGA 560 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 T+V+ + L TP + R+ L I + V+ G+ S ++ T V + Sbjct: 561 TTVSFKKAVLSLRVTPHITPDNRVILDLEITQDSQGAVVATPMGEAVSIDTQRIGTQVLV 620 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G TIVL G+ + ++ +P+L IP LG LFR++ + E E+ I T ++ Sbjct: 621 NHGETIVLGGIYQQNLISRVTKVPILGDIPFLGFLFRSTSDSNERQELLIFITAKII 677 >gi|127511323|ref|YP_001092520.1| pilus (MSHA type) biogenesis protein MshL [Shewanella loihica PV-4] gi|126636618|gb|ABO22261.1| pilus (MSHA type) biogenesis protein MshL [Shewanella loihica PV-4] Length = 563 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 32/253 (12%) Query: 195 QVTLKVTIAEVR-RDILKQIGFQHSITGSSSGPSKSF----AADFGGKFVSE--GG--DF 245 QV L+ + EV D +Q S+ G S S F A D G ++ GG Sbjct: 289 QVILEAKVLEVTLSDGYQQGIHWESVLGQSGNNSIEFGTSPAPDGLGDVITSAIGGITSL 348 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302 +KG F T+++ L+ + L+ P +TA + Q A G + T SST Sbjct: 349 QIKGK----DFSTMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGRDEYFVTDVSSTTVA 404 Query: 303 GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGD----- 347 G T VTT + G+ L TP + G + L I ++ E + D Sbjct: 405 GTTPVTTPEVELTPFFSGIALDVTPQIDEEGSVLLHIHPSVIDIKEQNKSIKVSDSTLEL 464 Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + +R++DT ++ +G +V+ GL+K + +L +PLL IP LG F N + Sbjct: 465 PLAQSEIRESDTVIKANTGDVVVIGGLMKSENIELISKVPLLGDIPFLGEAFTNRSNSLR 524 Query: 407 ETEIFIAATPFLV 419 +TE+ I P +V Sbjct: 525 KTELVILLKPTVV 537 >gi|170721649|ref|YP_001749337.1| type II and III secretion system protein [Pseudomonas putida W619] gi|169759652|gb|ACA72968.1| type II and III secretion system protein [Pseudomonas putida W619] Length = 625 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321 I TLA P + +S + + GQ + ++S +T SVT D G+ L PT Sbjct: 401 INTLASPVIR-VSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPT 459 Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378 V + +++ EVS P+ G +P R A T++ L G T VLAGL+++D Sbjct: 460 VHLNNEVAIKVALEVSNATPLEPTRQGTIPVQVDTRNAQTSLRLHDGETQVLAGLVRNDK 519 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP L IP LG LF ++R + ++E+ +A TP +V+ Sbjct: 520 TSSGNKIPGLGDIPGLGRLFGSNRDDMSKSELVLAITPRIVR 561 >gi|119505541|ref|ZP_01627613.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2080] gi|119458650|gb|EAW39753.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2080] Length = 723 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + +++P + Q A+ SG + Y+ +++GAT+V+ + + L T Sbjct: 556 LSALESSGQGEVVSQPKIITGDKQLATIKSGSEIPYQE-GAASGATTVSFKEAVLKLEVT 614 Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK- 375 P + RI L + Q + + V G +P+ + T V + +G T+VL G+ + Sbjct: 615 PNITPDDRILLDLVVNQDSLGDLVPSGTGGLIPTINTTQLTTQVLVGNGETVVLGGVFQN 674 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 D+I Q+++ +P L IP LG LF+N+ +TE I TP Sbjct: 675 DEITQIRK-VPFLGDIPYLGTLFKNTASKTSKTETLIFITP 714 >gi|326562497|gb|EGE12814.1| type IV pilus secretin PilQ [Moraxella catarrhalis 103P14B1] gi|326572679|gb|EGE22668.1| type IV pilus secretin PilQ [Moraxella catarrhalis CO72] gi|326574278|gb|EGE24226.1| type IV pilus secretin PilQ [Moraxella catarrhalis 101P30B1] Length = 473 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 14/187 (7%) Query: 244 DFSVKGVLDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 D V + R +F + L A++ ++ P + Q+A +SG Q Sbjct: 291 DLGVDNAMGRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQI 350 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 Y+ + S GA++ + ++L TP + G+IGL++ + PV + G + + + Sbjct: 351 PYQETTHS-GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL--GHI-AIQE 406 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 +T V + G T+VL G+ + + +P L +P+LG LFR+ +++E+ I Sbjct: 407 DAIETNVIIEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIF 466 Query: 414 ATPFLVK 420 TP LV+ Sbjct: 467 ITPKLVR 473 >gi|171060101|ref|YP_001792450.1| general secretion pathway protein D [Leptothrix cholodnii SP-6] gi|170777546|gb|ACB35685.1| general secretion pathway protein D [Leptothrix cholodnii SP-6] Length = 753 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 90/216 (41%), Gaps = 39/216 (18%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAIS--------GQSASFTSGGQHLYKTVSS 300 G L RF LE T L+ P L A+ GQ+ F +G + + Sbjct: 490 GALARF--------LESNTGANVLSTPNLIALDNEEAKIVIGQNVPFVTGS---FTNTGT 538 Query: 301 STGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRK 355 S G+ ++ D G+ L P + G + + I E S V P+ Sbjct: 539 SNGSANPFQTIERKDVGLTLRVKPQIGEGGTVRMVIYQENSSVVANTTTNSAGPTTDKSA 598 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +TTV + G +VL GLLKDD ++ +P L+ IP++G LFR+ R ++ + + Sbjct: 599 IETTVVVDDGSIMVLGGLLKDDYGSGEDRVPGLASIPLIGGLFRSENRKRTKSNLLV--- 655 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 ++PV MR + DA A +R + I Sbjct: 656 --FLRPVVMRS----------QQDANALTLDRYDAI 679 >gi|30250239|ref|NP_842309.1| pilQ; fimbrial type-4 assembly signal peptide protein [Nitrosomonas europaea ATCC 19718] gi|30181034|emb|CAD86224.1| probable pilQ; fimbrial type-4 assembly signal peptide protein [Nitrosomonas europaea ATCC 19718] Length = 718 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 4/161 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + R +A P L + AS G + ++T+S + G L T Sbjct: 550 LSALESDSKGRVIASPRLVTANRVEASIEQGTEIPFQTISVTRPQIQFKKAVLG--LKVT 607 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + I +++Q V++ G N P+ ++ T V + +GGT+V+ G+ + + Sbjct: 608 PQITPDDNIIMKLQ--VNQDTRGENTPAGPAIDTKQIVTEVLVENGGTVVIGGIFEQVEK 665 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 Q + +PLL IP+LG LF+N+ ++ E+ I TP ++ Sbjct: 666 QDRNQVPLLGDIPVLGNLFKNTAKRDDKRELLIFVTPRILN 706 >gi|262375159|ref|ZP_06068393.1| general secretion pathway protein D [Acinetobacter lwoffii SH145] gi|262310172|gb|EEY91301.1| general secretion pathway protein D [Acinetobacter lwoffii SH145] Length = 754 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 9/185 (4%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 GD+ R + ++ AL+ T L+ P++ + + A G + T S ST Sbjct: 461 GDYREGSDGSRRLYGAMIQALKETTKSNLLSTPSIVTMDNEEAYIVVGENVPFVTGSVST 520 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVR 354 GA T++ D GV L P + G + L ++ EVS+ A D+ + + R Sbjct: 521 GAAGVANPYTTIERKDVGVTLKVVPHIGEDGTVRLEVEQEVSDVKASKGQAQDLVTSK-R 579 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T++ G TIVL GL+ D+ ++ +P L IP LG LFR+ + ++ + I Sbjct: 580 AIKTSILAEHGQTIVLGGLISDNTSYGRQAVPGLGAIPGLGRLFRSEGKSNQKRNLLIFI 639 Query: 415 TPFLV 419 P +V Sbjct: 640 HPTIV 644 >gi|288817748|ref|YP_003432095.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] gi|288787147|dbj|BAI68894.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] gi|308751347|gb|ADO44830.1| type II and III secretion system protein [Hydrogenobacter thermophilus TK-6] Length = 700 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 9/163 (5%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGAT-----SVTTHD 311 +L+ L T+++ L+ P + + A G + L + + TG T V Sbjct: 504 ILNFLASKTSLKVLSAPHILVKDNEEAKIEVGAEVPILTQQIVPVTGGTLNVQNMVQYRT 563 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIV 369 GV+L PTV + + L+I EVS+ V ++ P R A TT+ L + + Sbjct: 564 TGVILKVRPTVSADNSVTLKITQEVSDAVKNTVQPELTSPLITKRSASTTLILRNDQVGL 623 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 L G++++ +Q+ K G+PLLS IP LG LF N + TE+ + Sbjct: 624 LGGIIQNRLQRQKSGVPLLSDIPGLGILFSNESVSSSNTELIL 666 >gi|283788039|ref|YP_003367904.1| T2SS protein D [Citrobacter rodentium ICC168] gi|282951493|emb|CBG91192.1| putative T2SS protein D [Citrobacter rodentium ICC168] Length = 662 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 101/251 (40%), Gaps = 45/251 (17%) Query: 237 KFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTLTAISGQ 283 +F +GG S D FS + +L AL + L+ P++ + + Sbjct: 394 EFKKQGGITSDNPAYDLFSKYRGMAAGFFSGDWAVLLTALSSDSKNDILSTPSIVTLDNK 453 Query: 284 SASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ASF T+ G ++Y TV T G L TP + + + Sbjct: 454 EASFNVGQDVPVLSGSQTTSGDNIYSTVERKT---------VGTKLKVTPQINEGDSVLM 504 Query: 331 RIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 I+ EVS ++ + P++ R V + SG T+VL GL+ D ++ +PLL Sbjct: 505 EIEQEVSSVDSTASSSSLGPTFNTRTIQNAVLVKSGETVVLGGLMDDSSKEEVSKVPLLG 564 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 IP +G LFR + + + + + ++P +RD DD Y K F + Sbjct: 565 DIPFIGQLFRYTNHEKSKRNLMV-----FIRPTIIRD----DDVYRSLSREKYTHFRDIQ 615 Query: 450 KIYGPKEASEV 460 K K +S++ Sbjct: 616 KTRADKNSSQL 626 >gi|260771969|ref|ZP_05880886.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio metschnikovii CIP 69.14] gi|260612836|gb|EEX38038.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio metschnikovii CIP 69.14] Length = 663 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 21/181 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + ++ A+ ++ L+ P++T + ASF G + V TG+T+ + +D Sbjct: 433 WTALISAVSSTSSTNILSSPSITVMDNGEASFIVG-----EEVPVLTGSTAGSNNDNPFQ 487 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L I+ EVS V+G + R+ +TTV + G Sbjct: 488 TVERKEVGIKLKVVPQINEGDSVQLSIEQEVSN-VLGAQGAVDVRFAKRQLNTTVMVQDG 546 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL GL+ + + + +P+L IP+LG LFR++ E+ + + +KP +R Sbjct: 547 QMLVLGGLIDERTAESESKVPILGDIPLLGYLFRSTNTTVEKKNLMV-----FIKPTIIR 601 Query: 426 D 426 D Sbjct: 602 D 602 >gi|193076133|gb|ABO10746.2| putative general secretion pathway protein [Acinetobacter baumannii ATCC 17978] Length = 758 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 35/258 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-------------- 240 QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 394 QVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGSAGAA 453 Query: 241 -------EGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G+ + G+ + R ++ ++ AL+ T L+ P++ + + A Sbjct: 454 SAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPSIVTMDNEEAYIVV 513 Query: 290 GGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVI 341 G + T S +T +T + + D GV L P + G + L ++ EVS + Sbjct: 514 GQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRLEVEQEVSAVQDSR 573 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G A + S R K T V G T+VL GL+ DD ++GIP LS IP +G LFR+ Sbjct: 574 GQAADLVTSKRAIK--TAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRLFRSD 631 Query: 402 RFNREETEIFIAATPFLV 419 + + + + P +V Sbjct: 632 NRSNVKRNLLVFIHPTIV 649 >gi|325282922|ref|YP_004255463.1| type II and III secretion system protein [Deinococcus proteolyticus MRP] gi|324314731|gb|ADY25846.1| type II and III secretion system protein [Deinococcus proteolyticus MRP] Length = 655 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 39/231 (16%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLD 252 Q+ L+V I E+ + K +G +T A F + G F+ + Sbjct: 413 QINLQVRIQEINEEATKTLGVNWRVT----------AGGFNVGILPSGLTASFNPLQTVT 462 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQ----------------SASFTSGGQHLYK 296 F+ L+ALE + + + T++ SGQ +AS SGG L Sbjct: 463 GFNIFPALNALESQRVAKRVYDGTVSMQSGQGSLNAGTGSQDASSTAAASIRSGG-RLEL 521 Query: 297 TVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPV------IGVNAGDMP 349 + + G+ T YGVVL F P+V G I LR++ +++E + +G P Sbjct: 522 NIIGAEGSNIEKTIPYGVVLDFFEPSVAPDGTITLRVRGQINELRNREALNAALASGGAP 581 Query: 350 S---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 S + A T + SG T++LAGL+ ++ K G+P LS+IP LGAL Sbjct: 582 SLLDFLNSDAQTKISFKSGETVLLAGLMAENNSTTKSGLPFLSQIPGLGAL 632 >gi|149376650|ref|ZP_01894409.1| Type II secretory pathway, component PulD [Marinobacter algicola DG893] gi|149359023|gb|EDM47488.1| Type II secretory pathway, component PulD [Marinobacter algicola DG893] Length = 578 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 35/275 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFGGKFVSE---GGD 244 QV L+ I E+ + Q G S+T S P A G+ ++ GG Sbjct: 286 QVVLEAKILEIGLNEGYQQGINWADIQSASSVTASDGLPEDFTAQALAGQVITTSDIGGL 345 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG 303 FS + F ++ L ++ L+ P ++ ++ Q A G + T + Sbjct: 346 FSAS--VRAGDFTGLIELLGEQGNVQILSSPRISTVNNQKAVIKVGTDEFFVTDIDFDDN 403 Query: 304 ATSVTTHDY------------GVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAG 346 ++VT D G+ L TP + G I L + VSE VI V Sbjct: 404 NSAVTATDRTSTSVELTPFFSGISLDVTPQISEDGAITLHVHPSVSEVNDQKKVITVGDR 463 Query: 347 D----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 D + VR+ D+ + SG +V+ GL+++ + +P S+IP+LG LF+ R Sbjct: 464 DVTLPLALSTVRETDSVIRAESGQIVVIGGLIQNTSEDNNSAVPFFSEIPLLGELFKQRR 523 Query: 403 FNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSV 436 F ++E+ I P + M D+S D V Sbjct: 524 FQSRKSELVILLRPVVAGSQQMNADVSASRDRMRV 558 >gi|296113651|ref|YP_003627589.1| type IV pilus secretin PilQ [Moraxella catarrhalis RH4] gi|295921345|gb|ADG61696.1| type IV pilus secretin PilQ [Moraxella catarrhalis RH4] gi|326566933|gb|EGE17071.1| type IV pilus secretin PilQ [Moraxella catarrhalis 12P80B1] gi|326568865|gb|EGE18935.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC8] Length = 473 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 14/187 (7%) Query: 244 DFSVKGVLDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 D V + R +F + L A++ ++ P + Q+A +SG Q Sbjct: 291 DLGVDNAMGRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQI 350 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 Y+ + S GA++ + ++L TP + G+IGL++ + PV + G + + + Sbjct: 351 PYQETTHS-GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL--GHI-AIQE 406 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 +T V + G T+VL G+ + + +P L +P+LG LFR+ +++E+ I Sbjct: 407 DAIETNVIIEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIF 466 Query: 414 ATPFLVK 420 TP LV+ Sbjct: 467 ITPKLVR 473 >gi|264676762|ref|YP_003276668.1| general secretion pathway protein D [Comamonas testosteroni CNB-2] gi|262207274|gb|ACY31372.1| general secretion pathway protein D [Comamonas testosteroni CNB-2] Length = 793 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 15/165 (9%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATS-----VTTH---DYGVVLHFTPTV 322 L+ P L + + AS G + T S ++T TS TT+ D G +L P + Sbjct: 540 LSTPNLMTLDNEEASIMVGENVPFPTGSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQI 599 Query: 323 LSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 G I + + E S G NA + R ++ V + G +VL GL+ D+ Q Sbjct: 600 NENGTIKMAVYQENSAVKQGTANAQSGATTTKRSIESNVLVEDGAIVVLGGLIADEYSQS 659 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +E +PLL IP+LG LFRN+ R++T + + FL +P +RD Sbjct: 660 QERVPLLGDIPLLGNLFRNTSRERKKTNLMV----FL-RPTVLRD 699 >gi|119898381|ref|YP_933594.1| general secretion pathway protein D [Azoarcus sp. BH72] gi|119670794|emb|CAL94707.1| general secretion pathway protein D [Azoarcus sp. BH72] Length = 675 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 130/273 (47%), Gaps = 25/273 (9%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAADF 234 +++V+ L++A E +V L+V + EV R+ L+ +G ++ + + + S AA F Sbjct: 320 AERVLASLDVA-EPEVMLEVEVLEVSRNKLQDLGIEYPTQVGYGLLTPNVTSTVSTAAGF 378 Query: 235 GGKFVSEGGDFSVKGVL---DRFSF-------ETVLHALERATAIRTLAEPTLTAISGQS 284 + GG+ + KG++ DR S VL+ LA P + + + Sbjct: 379 ATS-TTLGGELA-KGMINLRDRGSLVPYVSNPGAVLNLRAEDGDTSLLANPRIRVKNREK 436 Query: 285 ASFTSGGQH--LYKTVSSSTG-ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A G + T +++ G + SV D G+ L P V + +++ EVS V Sbjct: 437 AKIHIGEKLPVFTTTATANVGVSASVNYLDVGLKLDVEPAVTLEDEVVIKVALEVSSIVK 496 Query: 342 GVNAGDMP-SYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 V +Y+V R A TT+ L +G T VLAGL+ D+ + +P L ++P++G LF Sbjct: 497 EVTGPSSSLAYQVGTRSAATTLRLANGETQVLAGLINDEERSSARRLPGLGELPVVGRLF 556 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 R + +TE+ + TP +V+ V L+R D Sbjct: 557 SAQRDSNTKTEVVLLITPRIVRNVVAPSLARAD 589 >gi|226943724|ref|YP_002798797.1| general secretion pathway protein D [Azotobacter vinelandii DJ] gi|226718651|gb|ACO77822.1| general secretion pathway protein D [Azotobacter vinelandii DJ] Length = 752 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 13/168 (7%) Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVL 323 + P L SG+ A+ G + V+ +T +T +V GV+L+ PTV Sbjct: 546 SSPKLMVRSGEEATIEVGNE--IPVVTGTTQSTDTDNAPITQTVQYRKTGVLLNIKPTVQ 603 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + G + L+I E+SE + P R+ +T + L GG+++LAGL+ + Sbjct: 604 ASGVVDLKISQELSESTDTGTGDTLTPIINNRRVETALTLRDGGSVMLAGLISSSKGKGD 663 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSR 429 G+PLL +P +G LF++ + TE+ + P++V+ +DLSR Sbjct: 664 NGVPLLGDLPWIGNLFKSQSNSETRTELIVMIIPYVVRDFDEAQDLSR 711 >gi|238754545|ref|ZP_04615899.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473] gi|238707176|gb|EEP99539.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473] Length = 674 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 16/208 (7%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVT 308 R ++ + AL ++ LA P++ + A F+ G + +T S+ +++ Sbjct: 434 RGNWSGLFTALATNSSNEILATPSIVTLDNMDAEFSVGQEVPVLSSQQTTSTDKVYNTIS 493 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSG 365 G++L P + + L I+ EVS N ++ R + V + SG Sbjct: 494 RQSVGIMLKVKPQINKGDSVLLEIRQEVSSVAENSNVDKDNIGSTFNKRVVNNAVLVKSG 553 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T+V+ GLL + + IPLL IPI+G LFR + E+ + + +KP +R Sbjct: 554 ETVVVGGLLDKKVSNVINKIPLLGDIPIIGNLFRQKKEKIEKRNLIL-----FIKPTIIR 608 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 + DD+ S + K+ FN N + Sbjct: 609 E---SDDYLSTTSE-KSKTFNEKNNDWN 632 >gi|237653194|ref|YP_002889508.1| general secretion pathway protein D [Thauera sp. MZ1T] gi|237624441|gb|ACR01131.1| general secretion pathway protein D [Thauera sp. MZ1T] Length = 728 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 68/272 (25%), Positives = 110/272 (40%), Gaps = 49/272 (18%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-------------------- 234 QV ++ IAE+ + + GFQ + G+S+G A Sbjct: 408 QVYIEALIAEISTERAAEFGFQW-VAGASAGEVGVLGAQLFNSGGGNLGQLIAGSADRTR 466 Query: 235 ------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G V GG +V G+ + S + LE + L+ P L + + A Sbjct: 467 LTLPNNGLNLVVGGGKVNVPGIGEVLSLGVLARFLENEVSANILSTPNLITLDNEEARIV 526 Query: 289 SG-------GQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 G GQ+ T +T A T D G+ LH P + G I L+I E S Sbjct: 527 VGRNLPFVTGQY-ANTGGGTTPANPFQTIERRDVGLTLHVKPQISEGGAIRLQIYQEASA 585 Query: 339 PVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 V+G AG+ + + R ++ V + G + L GL++D +E +P+L +P Sbjct: 586 -VVGSAESAAAGNSVTTK-RSIESMVLVDDGAILALGGLVEDSYSGGEEKVPVLGDLPFA 643 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 G+LFR R +T + + ++PV +RD Sbjct: 644 GSLFRYDTRKRAKTNLVV-----FLRPVILRD 670 >gi|119899935|ref|YP_935148.1| type 4 fimbrial biogenesis protein [Azoarcus sp. BH72] gi|119672348|emb|CAL96262.1| probable type 4 fimbrial biogenesis protein [Azoarcus sp. BH72] Length = 707 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 5/162 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE R ++ P + + AS G + Y SSS GAT+V + L Sbjct: 542 LAALESDGRGRVVSSPRVLTANQVEASIEQGTEVPYLQASSS-GATNVAFKKAVLSLKVK 600 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + GR+ L I+ P+ ++P + + V + +GGT+V+ G+ +++ Sbjct: 601 PQITPDGRLQLSIEVNKDRPLFESAVLNVPPIETKNVKSEVLIDNGGTVVIGGIYEEEET 660 Query: 380 QLKEGIPLLSKIPILGALFRNSR--FNREETEIFIAATPFLV 419 ++ +P+L ++P++G LFR NR+E +FI TP +V Sbjct: 661 SNEDRVPILGELPVVGFLFRTRSKISNRKELLVFI--TPKIV 700 >gi|326575064|gb|EGE24993.1| type IV pilus secretin PilQ [Moraxella catarrhalis O35E] Length = 473 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 14/187 (7%) Query: 244 DFSVKGVLDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 D V + R +F + L A++ ++ P + Q+A +SG Q Sbjct: 291 DLGVDNAMGRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQI 350 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 Y+ + S GA++ + ++L TP + G+IGL++ + PV + G + + + Sbjct: 351 PYQETTHS-GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL--GHI-AIQE 406 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 +T V + G T+VL G+ + + +P L +P+LG LFR+ +++E+ I Sbjct: 407 DAIETNVIIEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIF 466 Query: 414 ATPFLVK 420 TP LV+ Sbjct: 467 ITPKLVR 473 >gi|148547514|ref|YP_001267616.1| type II and III secretion system protein [Pseudomonas putida F1] gi|148511572|gb|ABQ78432.1| type II and III secretion system protein [Pseudomonas putida F1] Length = 621 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321 I TLA P + +S + + GQ + ++S +T SVT D G+ L PT Sbjct: 401 INTLASPVIR-VSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPT 459 Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378 V + +++ EVS P+ G +P R A T++ L G T VLAGL+++D Sbjct: 460 VHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDGETQVLAGLVRNDH 519 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP L IP LG LF +++ + ++E+ +A TP +V+ Sbjct: 520 NASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVR 561 >gi|326560015|gb|EGE10410.1| type IV pilus secretin PilQ [Moraxella catarrhalis 46P47B1] Length = 473 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 14/187 (7%) Query: 244 DFSVKGVLDRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 D V + R +F + L A++ ++ P + Q+A +SG Q Sbjct: 291 DLGVDNAMGRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQI 350 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 Y+ + S GA++ + ++L TP + G+IGL++ + PV + G + + + Sbjct: 351 PYQETTHS-GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL--GHI-AIQE 406 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 +T V + G T+VL G+ + + +P L +P+LG LFR+ +++E+ I Sbjct: 407 DAIETNVIIEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIF 466 Query: 414 ATPFLVK 420 TP LV+ Sbjct: 467 ITPKLVR 473 >gi|254443244|ref|ZP_05056720.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] gi|198257552|gb|EDY81860.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] Length = 582 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 18/177 (10%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----HLYKTVSSSTGATS 306 D+F F VL AL+ R ++ PT+ ++ Q A + G Q + Y + + Sbjct: 378 DQFGF--VLSALKEQGGSRLVSNPTVVTLNNQEAMISVGEQFPIPNYQYNEETGGFEVSG 435 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTTVE 361 D G++L TP+V G I +++ EVS G +P R+ +T + Sbjct: 436 FEFKDIGIILKVTPSVNHTGLITMKVVPEVSSRTGERSFGGAGNASIPIISTRRTETRIA 495 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE----IFIAA 414 L G T+ + GL++ + K +P+L K+P LG LF++ ++ ET+ IFI A Sbjct: 496 LKDGFTMGIGGLMESTGTEDKNHVPVLGKVPGLGRLFKHE--SKSETKRNLLIFITA 550 >gi|26990190|ref|NP_745615.1| type II and III secretion system protein [Pseudomonas putida KT2440] gi|24985131|gb|AAN69079.1|AE016541_7 secretion protein, putative [Pseudomonas putida KT2440] Length = 621 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321 I TLA P + +S + + GQ + ++S +T SVT D G+ L PT Sbjct: 401 INTLASPVIR-VSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPT 459 Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378 V + +++ EVS P+ G +P R A T++ L G T VLAGL+++D Sbjct: 460 VHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDGETQVLAGLVRNDH 519 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP L IP LG LF +++ + ++E+ +A TP +V+ Sbjct: 520 NASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVR 561 >gi|163749924|ref|ZP_02157169.1| general secretion pathway protein D [Shewanella benthica KT99] gi|161330438|gb|EDQ01417.1| general secretion pathway protein D [Shewanella benthica KT99] Length = 711 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 10/168 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTT 309 F ++ A+ T LA P++T + Q A+F G + T S S+ T+V Sbjct: 446 FGALIQAISSDTRSNILATPSITTLDNQEATFIVGDEVPILTGSQSSSNGNSNPFTTVER 505 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + GV L P + + L I+ EVS + G + D+ ++ R+ TTV + SG +V Sbjct: 506 REVGVKLKVIPQINEGTSVKLTIEQEVS-GINGKTSVDV-TFATRRLTTTVMVDSGQIVV 563 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE--IFIAAT 415 L GL+ +++Q+ + +P L +PI+G LFR+S ++++ IFI AT Sbjct: 564 LGGLISEEVQESVQKVPFLGDLPIIGHLFRSSSSSKKKKNLMIFIKAT 611 >gi|169797464|ref|YP_001715257.1| putative general secretion pathway protein [Acinetobacter baumannii AYE] gi|184156612|ref|YP_001844951.1| Type II secretory pathway, component PulD [Acinetobacter baumannii ACICU] gi|213155722|ref|YP_002317767.1| general secretion pathway protein D [Acinetobacter baumannii AB0057] gi|215484901|ref|YP_002327140.1| general secretion pathway protein D [Acinetobacter baumannii AB307-0294] gi|301347975|ref|ZP_07228716.1| general secretion pathway protein D [Acinetobacter baumannii AB056] gi|301510797|ref|ZP_07236034.1| general secretion pathway protein D [Acinetobacter baumannii AB058] gi|301596692|ref|ZP_07241700.1| general secretion pathway protein D [Acinetobacter baumannii AB059] gi|332874904|ref|ZP_08442755.1| general secretion pathway protein D [Acinetobacter baumannii 6014059] gi|169150391|emb|CAM88288.1| putative general secretion pathway protein [Acinetobacter baumannii AYE] gi|183208206|gb|ACC55604.1| Type II secretory pathway, component PulD [Acinetobacter baumannii ACICU] gi|213054882|gb|ACJ39784.1| general secretion pathway protein D [Acinetobacter baumannii AB0057] gi|213988659|gb|ACJ58958.1| general secretion pathway protein D [Acinetobacter baumannii AB307-0294] gi|322506499|gb|ADX01953.1| PulD [Acinetobacter baumannii 1656-2] gi|323516378|gb|ADX90759.1| Type II secretory pathway, component PulD [Acinetobacter baumannii TCDC-AB0715] gi|332736847|gb|EGJ67823.1| general secretion pathway protein D [Acinetobacter baumannii 6014059] Length = 758 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 110/258 (42%), Gaps = 35/258 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-------------- 240 QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 394 QVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGSAGAA 453 Query: 241 -------EGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G+ + G+ + R ++ ++ AL+ T L+ P++ + + A Sbjct: 454 SAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPSIVTMDNEEAYIVV 513 Query: 290 GGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVI 341 G + T S +T +T + + D GV L P + G + L ++ EVS + Sbjct: 514 GQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRLEVEQEVSAVQDSR 573 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G A D+ + + R T V G T+VL GL+ DD ++GIP LS IP +G LFR+ Sbjct: 574 G-QAADLVTSK-RAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRLFRSD 631 Query: 402 RFNREETEIFIAATPFLV 419 + + + + P +V Sbjct: 632 NRSNVKRNLLVFIHPTIV 649 >gi|90413595|ref|ZP_01221585.1| putative fimbrial assembly protein [Photobacterium profundum 3TCK] gi|90325368|gb|EAS41857.1| putative fimbrial assembly protein [Photobacterium profundum 3TCK] Length = 565 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 7/164 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q+A G + Y SSS GA S+ + L T Sbjct: 403 LSALQSESKAEIISSPRLVTTNKQTAYIEQGTEIPYLEASSS-GAVSIDFKKAVLSLMVT 461 Query: 320 PTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P + ++ L + EP V G+ G+ S ++ T V + +G TIVL G+ + Sbjct: 462 PQITPDNKLVLDLVVTQDEPGKTVVTGI--GEAVSINTQRIGTQVLVENGETIVLGGIYQ 519 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +PLL +P LGALFR+S + E+ I TP +V Sbjct: 520 HQMNKSVSKVPLLGDLPYLGALFRHSLEEMGKRELLIFITPKIV 563 >gi|299529584|ref|ZP_07043021.1| general secretion pathway protein D [Comamonas testosteroni S44] gi|298722447|gb|EFI63367.1| general secretion pathway protein D [Comamonas testosteroni S44] Length = 750 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 15/165 (9%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATS-----VTTH---DYGVVLHFTPTV 322 L+ P L + + AS G + T S ++T TS TT+ D G +L P + Sbjct: 497 LSTPNLMTLDNEEASIMVGENVPFPTGSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQI 556 Query: 323 LSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 G I + + E S G NA + R ++ V + G +VL GL+ D+ Q Sbjct: 557 NENGTIKMAVYQENSAVKQGTANAQSGATTTKRSIESNVLVEDGAIVVLGGLIADEYSQS 616 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +E +PLL IP+LG LFRN+ R++T + + FL +P +RD Sbjct: 617 QERVPLLGDIPLLGNLFRNTSRERKKTNLMV----FL-RPTVLRD 656 >gi|196230668|ref|ZP_03129529.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] gi|196225009|gb|EDY19518.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] Length = 864 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 57/213 (26%) Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------- 297 +V GV F+ V+ AL + + L+ P +T SGQ A + Y T Sbjct: 599 AVAGVFTDPQFQLVIRALNQKKGVDLLSSPKVTTKSGQRAVIEIIREFRYPTEFTPPQIP 658 Query: 298 -----------------------VSSSTGATSVTTHDYGVVLHFTPTVLSPG-------- 326 + T T+ T + GV L P + G Sbjct: 659 QTFGNTGGGILGGGGGSSSTGSFPVTPTTPTAFETRNTGVTLEVEPVIGPDGYTIDLNLV 718 Query: 327 ----------RIGLRIQTEVSEPVIGV--------NAGDMPSYRVRKADTTVELPSGGTI 368 G I + V+ P+ G N + P + RK T+V + G T+ Sbjct: 719 PQVVEFEGFINYGSPITSSVTNPITGTSTQAVITPNVINQPIFSTRKVTTSVSVYDGSTV 778 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 VL GL+++D+Q++++ +P++ +PI+G LFR+S Sbjct: 779 VLGGLIREDVQKVEDKVPIIGDVPIIGRLFRSS 811 >gi|78064721|ref|YP_367490.1| type II and III secretion system protein [Burkholderia sp. 383] gi|77965466|gb|ABB06846.1| type II and III secretion system protein [Burkholderia sp. 383] Length = 781 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 12/153 (7%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEV 336 + GQ+ +G Y ++S + T+D G+ LH P + G + L++ TE Sbjct: 533 VVGQNVPIATGS---YSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTED 589 Query: 337 SEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S V G + P++ R +T+ +G IVL GL++D+ Q +PLL IP +G Sbjct: 590 SAVVAGTTSAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIG 649 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 LFR+ R +T + + ++PV + D S Sbjct: 650 QLFRSESKIRAKTNLMV-----FLRPVIISDRS 677 >gi|239502032|ref|ZP_04661342.1| general secretion pathway protein D [Acinetobacter baumannii AB900] Length = 758 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 110/258 (42%), Gaps = 35/258 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-------------- 240 QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 394 QVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGSAGAA 453 Query: 241 -------EGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G+ + G+ + R ++ ++ AL+ T L+ P++ + + A Sbjct: 454 SAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPSIVTMDNEEAYIVV 513 Query: 290 GGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVI 341 G + T S +T +T + + D GV L P + G + L ++ EVS + Sbjct: 514 GQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRLEVEQEVSAVQDSR 573 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G A D+ + + R T V G T+VL GL+ DD ++GIP LS IP +G LFR+ Sbjct: 574 G-QAADLVTSK-RAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRLFRSD 631 Query: 402 RFNREETEIFIAATPFLV 419 + + + + P +V Sbjct: 632 NRSNVKRNLLVFIHPTIV 649 >gi|146309174|ref|YP_001189639.1| general secretion pathway protein D [Pseudomonas mendocina ymp] gi|145577375|gb|ABP86907.1| general secretion pathway protein D [Pseudomonas mendocina ymp] Length = 748 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 15/151 (9%) Query: 282 GQSASFTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 GQ+ F +G Y T +S G T++ D GV L TP + + L I+ E+S Sbjct: 442 GQNVPFQTGS---YTTDASGAGNPFTTIERKDIGVTLKVTPHINDGATLRLVIEQEISSI 498 Query: 339 -PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 P G+NA D+ + + R +TV G IVL GL++DD +PLL IP +G Sbjct: 499 APSTGLNAQAVDLVTNK-RSIKSTVLADDGQVIVLGGLIQDDTSASASKVPLLGDIPGVG 557 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LFR++R R++ + + ++P RD Sbjct: 558 RLFRSTRDARQKRNLMV-----FLRPSVARD 583 >gi|222055737|ref|YP_002538099.1| type II and III secretion system protein [Geobacter sp. FRC-32] gi|221565026|gb|ACM20998.1| type II and III secretion system protein [Geobacter sp. FRC-32] Length = 805 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 25/190 (13%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVL 323 TLA P + + + A F G + ++ST TS+ + D GV ++ PT+ Sbjct: 423 ETLANPKIRVKNREKAKFNVGTR--VPITTTSTNGTSIGVNVNVQYVDVGVKVNAEPTIQ 480 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------RKADTTVELPSGGTIVLAGLLKDD 377 + +++ EVS + GD S R DT + L G T ++ GL++DD Sbjct: 481 LNNEVSIKLSLEVSTILSKDKIGDASSLTTVVTIGTRNLDTVLSLKDGETSIIGGLIQDD 540 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + K+ + +L IPI+G L N+ ++E+ +A TP +V+ V + E Sbjct: 541 KSKSKQKVMVLGDIPIIGPLLSNNDNTNRKSELVLAITPRVVRSVTVP-----------E 589 Query: 438 DDAKAFFFNR 447 DA F+ R Sbjct: 590 GDAAGFWSGR 599 >gi|37678398|ref|NP_933007.1| type II secretory pathway, component EpsD [Vibrio vulnificus YJ016] gi|37197137|dbj|BAC92978.1| type II secretory pathway, component EpsD [Vibrio vulnificus YJ016] Length = 672 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 32/209 (15%) Query: 239 VSEGGDFS-----VKGV------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 V+E GD+S + GV L + ++ A+ + L+ P++T + ASF Sbjct: 414 VTESGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASF 473 Query: 288 TSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPGRIGLRIQTEVS 337 G + V TG+T+ + +D G+ L P + + L I+ EVS Sbjct: 474 IVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVS 528 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 V+G N + R+ +T+V + G +VL GL+ + + + +PLL IPILG L Sbjct: 529 N-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHL 587 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426 F+++ E+ + + +KP +RD Sbjct: 588 FKSTNTQVEKKNLMV-----FIKPTIIRD 611 >gi|270157382|ref|ZP_06186039.1| type IV pilus assembly protein PilQ [Legionella longbeachae D-4968] gi|269989407|gb|EEZ95661.1| type IV pilus assembly protein PilQ [Legionella longbeachae D-4968] Length = 701 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 5/170 (2%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D + L ALE ++ P L + Q A SG + Y+ S+S+GAT+V Sbjct: 515 DNILLDLELSALESEGLAELISSPRLITANQQPALIDSGQEIPYQQ-STSSGATAVAFKK 573 Query: 312 YGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + L P + +I L+I +++ P N +P+ ++ T V + +G TIV Sbjct: 574 AVLSLKVIPQITPDNKILMDLKINQDLALPNQTYNG--VPAIATKEIQTNVLVSNGQTIV 631 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + D + +P ++P++G LF+N++ E+ I TP ++ Sbjct: 632 LGGIYQQDKSKTITRVPFFGQLPVVGNLFKNTQIGVHNDELLIFITPKII 681 >gi|289164222|ref|YP_003454360.1| type IV pilus (Tfp) assembly protein PilQ [Legionella longbeachae NSW150] gi|288857395|emb|CBJ11223.1| type IV pilus (Tfp) assembly protein PilQ [Legionella longbeachae NSW150] Length = 701 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 5/170 (2%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D + L ALE ++ P L + Q A SG + Y+ S+S+GAT+V Sbjct: 515 DNILLDLELSALESEGLAELISSPRLITANQQPALIDSGQEIPYQQ-STSSGATAVAFKK 573 Query: 312 YGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + L P + +I L+I +++ P N +P+ ++ T V + +G TIV Sbjct: 574 AVLSLKVIPQITPDNKILMDLKINQDLALPNQTYNG--VPAIATKEIQTNVLVSNGQTIV 631 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + D + +P ++P++G LF+N++ E+ I TP ++ Sbjct: 632 LGGIYQQDKSKTITRVPFFGQLPVVGNLFKNTQIGVHNDELLIFITPKII 681 >gi|254784514|ref|YP_003071942.1| general secretion pathway protein D [Teredinibacter turnerae T7901] gi|237684660|gb|ACR11924.1| general secretion pathway protein D [Teredinibacter turnerae T7901] Length = 661 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 19/198 (9%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S+G V G F +++ L+ + L+ PTL + A S GQ++ Sbjct: 407 SDGQTLGVAGESGGEDFLVLVNMLQSNSNANILSTPTLLTMDNNEA-MISVGQNVPFVTG 465 Query: 300 SSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 S T A ++ D G+ L TP V ++ L IQ E+S + AG Sbjct: 466 SFTNAGGNGGTNPFQTIQRQDVGITLTVTPHVNEGDKVILDIQQEISS--VSEEAGSASD 523 Query: 351 Y--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 RK +T V IVL GL++D++Q+ + +P+L IP++G LFR++ ++ Sbjct: 524 VITNQRKVETQVMAKDRSVIVLGGLIRDELQKSENRVPVLGSIPVMGRLFRSNSETLRKS 583 Query: 409 EIFIAATPFLVKPVAMRD 426 + I ++P +RD Sbjct: 584 NLMI-----FIRPTIIRD 596 >gi|238758713|ref|ZP_04619887.1| Protein transporter HofQ [Yersinia aldovae ATCC 35236] gi|238703010|gb|EEP95553.1| Protein transporter HofQ [Yersinia aldovae ATCC 35236] Length = 437 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G Y G ++ + + + TP +L G+I L Sbjct: 286 IASPRLVTSHQQTASIKQGSDIPYTVSRGKKGVPTIEFKEAVLGMEVTPKILRNGKITLN 345 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P + + GD + + K + T + + G TIVL G+ + Q +P+L+ Sbjct: 346 LKISQNMPGMAIKRGDSEALLIDKQEIKTQITVNDGETIVLGGIFQQKNNQGINKVPILA 405 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LGALF+ + E+ I TP L+ Sbjct: 406 DIPLLGALFKQDVRAQTRRELVIFITPRLI 435 >gi|167033463|ref|YP_001668694.1| type II and III secretion system protein [Pseudomonas putida GB-1] gi|166859951|gb|ABY98358.1| type II and III secretion system protein [Pseudomonas putida GB-1] Length = 621 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321 I TLA P + +S + + GQ + ++S +T SVT D G+ L PT Sbjct: 401 INTLASPVIR-VSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPT 459 Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378 V + +++ EVS P+ G +P R A T++ L G T VLAGL+++D Sbjct: 460 VHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDGETQVLAGLVRNDH 519 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP L IP LG LF +++ + ++E+ +A TP +V+ Sbjct: 520 NASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVR 561 >gi|313498582|gb|ADR59948.1| Type II and III secretion system protein [Pseudomonas putida BIRD-1] Length = 621 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321 I TLA P + +S + + GQ + ++S +T SVT D G+ L PT Sbjct: 401 INTLASPVIR-VSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPT 459 Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378 V + +++ EVS P+ G +P R A T++ L G T VLAGL+++D Sbjct: 460 VHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDGETQVLAGLVRNDH 519 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP L IP LG LF +++ + ++E+ +A TP +V+ Sbjct: 520 NASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVR 561 >gi|269968038|ref|ZP_06182076.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 40B] gi|269827395|gb|EEZ81691.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 40B] Length = 546 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 31/254 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------GGDFS 246 QV L+ I EV + Q G S +S G S S + + GG + Sbjct: 271 QVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSIVVNRPASTLPPLDAIGTLLGGQTN 330 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG-- 303 V + +F VL + + L+ P +TA + Q + G + T +SS+ G Sbjct: 331 V--TISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNG 388 Query: 304 -------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------D 347 +T G+ L TP + + G + L + EV+E V +N G Sbjct: 389 ENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQ 448 Query: 348 MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P + +R++D+ + G +V+ GL+K ++L +P L +P LG LFRN Sbjct: 449 LPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVT 508 Query: 406 EETEIFIAATPFLV 419 E+TE+ I P +V Sbjct: 509 EKTELVILLKPTVV 522 >gi|261493374|ref|ZP_05989900.1| competence protein E [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496640|ref|ZP_05993020.1| competence protein E [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307843|gb|EEY09166.1| competence protein E [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311018|gb|EEY12195.1| competence protein E [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 437 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 67/288 (23%), Positives = 130/288 (45%), Gaps = 36/288 (12%) Query: 164 SETFLSQSGR---NQYANS-----SSKKVMNLLNIAGE-----DQVTLKVTIAEVRRDIL 210 S TFLS++G ++ +NS S+K + N+ N+ + +Q+ ++ I + + L Sbjct: 143 SGTFLSENGYIHFDERSNSLIVKDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHL 202 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------GDFSVKG----VLDRFS-- 255 +++G + I +G K FGG+ G +F + G VL S Sbjct: 203 QELGVRWGIFSRGAGHYK-----FGGRLEGNGLNDVTNNLNVNFPITGGASAVLQVASIN 257 Query: 256 ---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + L ALE+ ++ +A P L + + AS G + Y ++ + AT V + Sbjct: 258 SRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEA 317 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 + L P + + +I L + + P + + + ++ +T V G TIVL G Sbjct: 318 VLGLEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGG 377 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + Q+ ++ +P+L IP + LF +R + E+ I TP++++ Sbjct: 378 IFQHLTQKGEDKVPILGSIPFIKRLFSQTRDKISKRELVIFVTPYILQ 425 >gi|229527442|ref|ZP_04416834.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae 12129(1)] gi|229335074|gb|EEO00559.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae 12129(1)] gi|327485110|gb|AEA79517.1| Type IV pilus biogenesis protein PilQ [Vibrio cholerae LMA3894-4] Length = 571 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q A G + Y SSS+GA++V + L T Sbjct: 409 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 467 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 468 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 527 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 528 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569 >gi|109896995|ref|YP_660250.1| type IV pilus secretin PilQ [Pseudoalteromonas atlantica T6c] gi|109699276|gb|ABG39196.1| type IV pilus secretin PilQ [Pseudoalteromonas atlantica T6c] Length = 580 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 11/163 (6%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE +A P +T ++ Q ++ G + S+S+GATSV + L T Sbjct: 413 LSALESENKGEVIASPRIT-VANQREAYIEQGTEIPYVQSTSSGATSVEFKKAVLSLKVT 471 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-- 375 P + RI L + + + + G + ++ T V + +G TIVL G+ + Sbjct: 472 PHITPDHRIILDLVVTQDTRGDTVNTSTGLAVAIDTQEISTQVLVNNGETIVLGGIFQQT 531 Query: 376 --DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DD+ Q +PLL IP+LG LF+N++ E+ E+ I TP Sbjct: 532 TTDDVSQ----VPLLGDIPVLGHLFKNTQTVNEKRELLIFVTP 570 >gi|22127802|ref|NP_671225.1| putative outer membrane porin HofQ [Yersinia pestis KIM 10] gi|45440014|ref|NP_991553.1| putative outer membrane porin HofQ [Yersinia pestis biovar Microtus str. 91001] gi|108814075|ref|YP_649842.1| putative outer membrane porin HofQ [Yersinia pestis Nepal516] gi|150260832|ref|ZP_01917560.1| putative membrane transport protein [Yersinia pestis CA88-4125] gi|218927361|ref|YP_002345236.1| putative outer membrane porin HofQ [Yersinia pestis CO92] gi|229310101|ref|YP_072232.2| outer membrane porin HofQ [Yersinia pseudotuberculosis IP 32953] gi|229358042|ref|YP_653226.2| putative outer membrane porin HofQ [Yersinia pestis Antiqua] gi|294502239|ref|YP_003566301.1| putative membrane transport protein [Yersinia pestis Z176003] gi|21960932|gb|AAM87476.1|AE013997_11 putative transport portein [Yersinia pestis KIM 10] gi|45434869|gb|AAS60430.1| putative membrane transport protein [Yersinia pestis biovar Microtus str. 91001] gi|108777723|gb|ABG20242.1| membrane transport protein [Yersinia pestis Nepal516] gi|115345972|emb|CAL18836.1| putative membrane transport protein [Yersinia pestis CO92] gi|149290240|gb|EDM40317.1| putative membrane transport protein [Yersinia pestis CA88-4125] gi|262364270|gb|ACY60827.1| putative membrane transport protein [Yersinia pestis D182038] gi|294352698|gb|ADE63039.1| putative membrane transport protein [Yersinia pestis Z176003] Length = 374 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G Y A ++ + + + TP +L G+I L Sbjct: 223 IASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNGKIILD 282 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P I + G+ + K + T V + G TIVL G+ + +Q +PLL+ Sbjct: 283 LKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQSVNKVPLLA 342 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LGA+FR + E+ I TP L+ Sbjct: 343 DIPLLGAMFRQDTQQQSRRELVIFITPKLI 372 >gi|91225619|ref|ZP_01260693.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 12G01] gi|91189739|gb|EAS76013.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 12G01] Length = 529 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 31/254 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------GGDFS 246 QV L+ I EV + Q G S +S G S S + + GG + Sbjct: 254 QVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSIVVNRPASTLPPLDAIGTLLGGQTN 313 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG-- 303 V + +F VL + + L+ P +TA + Q + G + T +SS+ G Sbjct: 314 V--TISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNG 371 Query: 304 -------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------D 347 +T G+ L TP + + G + L + EV+E V +N G Sbjct: 372 ENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQ 431 Query: 348 MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P + +R++D+ + G +V+ GL+K ++L +P L +P LG LFRN Sbjct: 432 LPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVT 491 Query: 406 EETEIFIAATPFLV 419 E+TE+ I P +V Sbjct: 492 EKTELVILLKPTVV 505 >gi|229507318|ref|ZP_04396823.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae BX 330286] gi|229509758|ref|ZP_04399239.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae B33] gi|229513553|ref|ZP_04403017.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TMA 21] gi|229516883|ref|ZP_04406329.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC9] gi|229521696|ref|ZP_04411114.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TM 11079-80] gi|229606824|ref|YP_002877472.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae MJ-1236] gi|262158485|ref|ZP_06029600.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae INDRE 91/1] gi|262170121|ref|ZP_06037810.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC27] gi|229341290|gb|EEO06294.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TM 11079-80] gi|229345946|gb|EEO10918.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC9] gi|229349430|gb|EEO14386.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TMA 21] gi|229353232|gb|EEO18171.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae B33] gi|229354823|gb|EEO19744.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae BX 330286] gi|229369479|gb|ACQ59902.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae MJ-1236] gi|262021529|gb|EEY40241.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC27] gi|262029646|gb|EEY48295.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae INDRE 91/1] Length = 571 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q A G + Y SSS+GA++V + L T Sbjct: 409 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 467 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 468 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 527 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 528 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569 >gi|291612969|ref|YP_003523126.1| general secretion pathway protein D [Sideroxydans lithotrophicus ES-1] gi|291583081|gb|ADE10739.1| general secretion pathway protein D [Sideroxydans lithotrophicus ES-1] Length = 690 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 111/261 (42%), Gaps = 40/261 (15%) Query: 195 QVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGG--------------KF 238 Q+ ++ I EV D + G +Q+ + S SG +FG Sbjct: 350 QIFVEALIVEVTADKAAEFGVQWQNLVGASKSGAHIIGGTNFGSVASGNNIIDAANNLST 409 Query: 239 VSEG-------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG- 290 V++G G ++ GV + + ALE T L+EP L + + A G Sbjct: 410 VNQGLNIGIVNGTTTIPGVGTVLNLGMLARALETDTNANILSEPNLMTLDNEEAKIVVGQ 469 Query: 291 ------GQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ Y S+T AT T D G+ L P ++ G + L+I EVS + Sbjct: 470 NVPFITGQ--YAQTGSATTATPFQTIERKDVGLTLKIKPQIMQGGTVKLQIYQEVSSVLP 527 Query: 342 GVNA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 ++ G + + R +++ V+ +VL GL++D + ++ PLL IPILG+LF Sbjct: 528 SSSSSTSGLITNKRSIESNILVD--DNQIVVLGGLIQDSVNDVQSKTPLLGDIPILGSLF 585 Query: 399 RNSRFNREETEIFIAATPFLV 419 R +T + + P+++ Sbjct: 586 RYDTRQHTKTNLMVFIRPYIM 606 >gi|254507255|ref|ZP_05119391.1| general secretion pathway protein D [Vibrio parahaemolyticus 16] gi|219549715|gb|EED26704.1| general secretion pathway protein D [Vibrio parahaemolyticus 16] Length = 678 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 21/181 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + ++ A+ + L+ P++T + ASF G + V TG+T+ + +D Sbjct: 448 WTALISAVSTDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 502 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L I+ EVS V+G N + R+ +T+V + G Sbjct: 503 TVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVNDG 561 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 IVL GL+ + + + +PLL IP+LG LF+++ E+ + + +KP +R Sbjct: 562 QMIVLGGLIDERALESESKVPLLGDIPVLGHLFKSTSTQVEKKNLMV-----FIKPTIIR 616 Query: 426 D 426 D Sbjct: 617 D 617 >gi|153825107|ref|ZP_01977774.1| fimbrial assembly protein [Vibrio cholerae MZO-2] gi|149741253|gb|EDM55295.1| fimbrial assembly protein [Vibrio cholerae MZO-2] Length = 578 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q A G + Y SSS+GA++V + L T Sbjct: 416 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 474 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 475 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 534 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 535 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576 >gi|254225379|ref|ZP_04918990.1| fimbrial assembly protein [Vibrio cholerae V51] gi|125622013|gb|EAZ50336.1| fimbrial assembly protein [Vibrio cholerae V51] Length = 578 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q A G + Y SSS+GA++V + L T Sbjct: 416 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 474 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 475 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 534 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 535 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576 >gi|262189810|ref|ZP_06048151.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae CT 5369-93] gi|262034306|gb|EEY52705.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae CT 5369-93] Length = 571 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q A G + Y SSS+GA++V + L T Sbjct: 409 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 467 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 468 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 527 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 528 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569 >gi|104781918|ref|YP_608416.1| secretion type II protein [Pseudomonas entomophila L48] gi|95110905|emb|CAK15621.1| Putative secretion type II protein related to gspD (secretin) protein [Pseudomonas entomophila L48] Length = 611 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321 I TLA P + +S + + GQ + ++S +T SVT D G+ L PT Sbjct: 397 INTLASPVIR-VSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPT 455 Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378 V + +++ EVS P+ G +P R A T++ L G T VLAGL+++D Sbjct: 456 VHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDGETQVLAGLVRNDH 515 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP L IP LG LF +++ + ++E+ +A TP +V+ Sbjct: 516 NASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVR 557 >gi|218708368|ref|YP_002415989.1| MSHA biogenesis protein MshL [Vibrio splendidus LGP32] gi|218321387|emb|CAV17337.1| MSHA biogenesis protein MshL [Vibrio splendidus LGP32] Length = 554 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 21/186 (11%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA--------- 304 SFE VL ++ + L+ P +TA + Q A G Y T +SSS G+ Sbjct: 345 SFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTELSSSVGSGDNANVAPE 404 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----------PVIGVNAGDMPSYRV 353 +T G+ L TP + G + L + V E G+ + + Sbjct: 405 VELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEVKELNLGSTTGIVKLPLAKSSI 464 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R++D+ + G +V+ GL+K + + +P L IP LG LFRN+ ++TE+ I Sbjct: 465 RESDSVIRAQDGDVVVIGGLMKSNTSDMTSKVPFLGDIPALGHLFRNTSQLTQKTELVIL 524 Query: 414 ATPFLV 419 P +V Sbjct: 525 LKPTIV 530 >gi|297581470|ref|ZP_06943393.1| fimbrial assembly protein [Vibrio cholerae RC385] gi|297534308|gb|EFH73146.1| fimbrial assembly protein [Vibrio cholerae RC385] Length = 578 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q A G + Y SSS+GA++V + L T Sbjct: 416 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 474 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 475 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 534 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 535 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576 >gi|113461255|ref|YP_719324.1| competence protein E [Haemophilus somnus 129PT] gi|112823298|gb|ABI25387.1| competence protein E [Haemophilus somnus 129PT] Length = 377 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 21/256 (8%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGD------ 244 +Q+ ++ I + + LK++G + I T ++ S S AA+ G + ++E + Sbjct: 122 EQIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGSLAAN-GFQHLTEQLNVNFATA 180 Query: 245 --------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + DR + L ALER + +A P L + QSAS G + Y Sbjct: 181 ATPAGSIALQIAKINDRL-LDLELTALERENNVEIIASPRLLTTNKQSASIKQGTEIPYV 239 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVR 354 + V + + L TP + I L + + P + G +M S + Sbjct: 240 ITGKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNSPGSRITYGQNEMVSIDKQ 299 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T V G TIVL G+ D I + + +PLL IPIL LF ++ E+ I Sbjct: 300 EINTQVFARDGETIVLGGVFHDTITKGVDKVPLLGDIPILKRLFSRESERHQKRELVIFV 359 Query: 415 TPFLVKPVAMRDLSRP 430 TP +++ ++ +P Sbjct: 360 TPRIIRSEQPNEIIKP 375 >gi|15642625|ref|NP_232258.1| fimbrial assembly protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587503|ref|ZP_01677270.1| fimbrial assembly protein [Vibrio cholerae 2740-80] gi|121727577|ref|ZP_01680685.1| fimbrial assembly protein [Vibrio cholerae V52] gi|147673064|ref|YP_001218123.1| fimbrial assembly protein [Vibrio cholerae O395] gi|153217486|ref|ZP_01951197.1| fimbrial assembly protein [Vibrio cholerae 1587] gi|153820291|ref|ZP_01972958.1| fimbrial assembly protein [Vibrio cholerae NCTC 8457] gi|153821537|ref|ZP_01974204.1| fimbrial assembly protein [Vibrio cholerae B33] gi|153830200|ref|ZP_01982867.1| fimbrial assembly protein [Vibrio cholerae 623-39] gi|227082746|ref|YP_002811297.1| fimbrial assembly protein [Vibrio cholerae M66-2] gi|254851169|ref|ZP_05240519.1| fimbrial assembly protein [Vibrio cholerae MO10] gi|298500547|ref|ZP_07010351.1| fimbrial assembly protein [Vibrio cholerae MAK 757] gi|9657220|gb|AAF95771.1| fimbrial assembly protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548234|gb|EAX58302.1| fimbrial assembly protein [Vibrio cholerae 2740-80] gi|121630068|gb|EAX62473.1| fimbrial assembly protein [Vibrio cholerae V52] gi|124113543|gb|EAY32363.1| fimbrial assembly protein [Vibrio cholerae 1587] gi|126509166|gb|EAZ71760.1| fimbrial assembly protein [Vibrio cholerae NCTC 8457] gi|126520922|gb|EAZ78145.1| fimbrial assembly protein [Vibrio cholerae B33] gi|146314947|gb|ABQ19486.1| fimbrial assembly protein [Vibrio cholerae O395] gi|148874303|gb|EDL72438.1| fimbrial assembly protein [Vibrio cholerae 623-39] gi|227010634|gb|ACP06846.1| fimbrial assembly protein [Vibrio cholerae M66-2] gi|227014518|gb|ACP10728.1| fimbrial assembly protein [Vibrio cholerae O395] gi|254846874|gb|EET25288.1| fimbrial assembly protein [Vibrio cholerae MO10] gi|297540716|gb|EFH76773.1| fimbrial assembly protein [Vibrio cholerae MAK 757] Length = 578 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q A G + Y SSS+GA++V + L T Sbjct: 416 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 474 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 475 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 534 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 535 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576 >gi|254285824|ref|ZP_04960786.1| fimbrial assembly protein [Vibrio cholerae AM-19226] gi|150424006|gb|EDN15945.1| fimbrial assembly protein [Vibrio cholerae AM-19226] Length = 578 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q A G + Y SSS+GA++V + L T Sbjct: 416 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 474 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 475 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 534 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 535 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576 >gi|238792812|ref|ZP_04636443.1| General secretion pathway protein D [Yersinia intermedia ATCC 29909] gi|238727920|gb|EEQ19443.1| General secretion pathway protein D [Yersinia intermedia ATCC 29909] Length = 658 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 14/182 (7%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 ++ + AL + LA P++ + A F G Q + S+ T +T S++ Sbjct: 422 NWSGLFTALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTSTDRVYNSISR 480 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366 + GV+L P + + L I+ EVS NA ++ S + R + V + SG Sbjct: 481 KNVGVMLKVKPQINKGDSVLLEIRQEVSSIADSSDANANNLGSIFNKRVVNNAVLVKSGE 540 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T+V+ GLL I ++ IP+L IP +G LFR + E++ + + +KP +R+ Sbjct: 541 TVVVGGLLDKKIYKIVNKIPILGDIPFIGGLFRQKKEKVEKSNLIL-----FIKPTILRE 595 Query: 427 LS 428 S Sbjct: 596 TS 597 >gi|171910644|ref|ZP_02926114.1| type II/III secretion system protein [Verrucomicrobium spinosum DSM 4136] Length = 816 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 54/233 (23%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----- 297 G F++ GV F+ V+ AL + + ++ P++T SGQ A+ + +Y T Sbjct: 549 GVFALAGVFTDPQFQVVIRALSQKKGVDLMSAPSVTTRSGQRATVEVIREFIYPTEFDPP 608 Query: 298 ----------------VSSSTGATSVTT--------HDYGVVLHFTPTVLSPG-RIGLRI 332 + SST A VT GV + P + G I L + Sbjct: 609 QIPQSVGATTTTGGVGLGSSTAAFPVTPTTPTAFEMRPVGVRMEVDPVIGPDGYTIDLNL 668 Query: 333 QTEVSEPVIGVNAG------------------------DMPSYRVRKADTTVELPSGGTI 368 EV+E +N G + P + RK T V + G T+ Sbjct: 669 APEVTEFEGFINYGSPINTASTDALGNPTTVTLTENRIEQPVFSTRKVTTAVTVWDGQTV 728 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + GL+++D+Q +++ +P+L IPILG LF++ + + + I T L+ P Sbjct: 729 AMGGLIREDVQDVEDKVPILGDIPILGRLFQSKAEDHFKRNLMIFVTAKLIDP 781 >gi|83648610|ref|YP_437045.1| type 4 fimbrial biogenesis protein PilQ [Hahella chejuensis KCTC 2396] gi|83636653|gb|ABC32620.1| type 4 fimbrial biogenesis protein PilQ [Hahella chejuensis KCTC 2396] Length = 720 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E +A+P + Q+A SG + Y+ SSS GATSV+ + L T Sbjct: 557 LSAFESDGKGEIVAQPKIVTADRQTARIESGEEIPYQEASSS-GATSVSFKKAVLSLEVT 615 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + +I + + +++ GV ++PS + +T V + +G TIVL G+ + Sbjct: 616 PQITPDDKIIMDLV--INQDSRGVVTANIPSIDTNEIETQVLVGNGETIVLGGIFTSEQS 673 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P L IP LG LFR + E +E+ + TP L+ Sbjct: 674 STVTKTPFLGDIPYLGRLFRKTENVNERSELLVFITPKLI 713 >gi|254482717|ref|ZP_05095955.1| type IV pilus secretin PilQ subfamily, putative [marine gamma proteobacterium HTCC2148] gi|214037076|gb|EEB77745.1| type IV pilus secretin PilQ subfamily, putative [marine gamma proteobacterium HTCC2148] Length = 692 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 12/211 (5%) Query: 213 IGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 IG +SI + PS S+ D G V+ F++ + + ALE A Sbjct: 478 IGLNNSIINGET-PSVSYPGALLVDLG---VASTSGFALGFTSNDLFLTAEISALEAAGQ 533 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 +++P + Q A+ SG + Y+ ++S GATS + + + L TP + R+ Sbjct: 534 GEVVSQPKVITGDKQQATIKSGTEIPYQEAAAS-GATSTSFKEAVLELEVTPNITPDDRV 592 Query: 329 GLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L + Q V + V G +PS + T V + +G T+VL G+ K + + + Sbjct: 593 MLDLNVKQDSVGDLVPSGQGGFIPSIDTTEITTQVLVGNGETVVLGGVFKTEDLETVNKV 652 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATP 416 P +P +GA FR+ N +TE I TP Sbjct: 653 PFFGDLPYVGAFFRSESRNNTKTETLIFITP 683 >gi|171059772|ref|YP_001792121.1| pilus (MSHA type) biogenesis protein MshL [Leptothrix cholodnii SP-6] gi|170777217|gb|ACB35356.1| pilus (MSHA type) biogenesis protein MshL [Leptothrix cholodnii SP-6] Length = 577 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 73/311 (23%), Positives = 130/311 (41%), Gaps = 49/311 (15%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-------------AADFGGKFV 239 E QV L+ I EV Q G S G + G + S A GG + Sbjct: 250 ERQVMLEAKILEVELGSEAQSGINWSAFGRALGGALSIGLVQPGVTLAGSGALTLGGTSI 309 Query: 240 SEGGDFSVKGVLDRF--------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + GG+ + F +F +L LE ++ L+ P + ++ Q A G Sbjct: 310 TPGGNLAASSSGAPFYGLAFQSANFAALLSFLESQGKVQVLSSPRIATLNNQKAVLKVGS 369 Query: 292 QHLYKT---------VSSSTGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQ---TEVS 337 LY T S+ST SV + G+ L TP + G++ L + + VS Sbjct: 370 DELYVTGVSSTTTATGSTSTSTPSVVLQPFFSGIALDVTPQIDDQGQVMLHVHPAISTVS 429 Query: 338 EPVIGVNAGDMPSYR-------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 E +N G + SY+ V + D+ V + G + + GL+ + ++ + +P L Sbjct: 430 EKQKNINLGSLGSYQLPLASSTVNETDSIVRVRDGQIVAIGGLMSQEQREERSAVPGLGD 489 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPD-DHYSVEDDAKAFFFNRV 448 +P++G LFR + + E+ I L+KP +R D P+ D + + + + + Sbjct: 490 VPLVGGLFRQTSTVMRKRELVI-----LIKPTVIRADGPWPEADTHQPASQLQPWRPDAM 544 Query: 449 NKIYGPKEASE 459 +++ P+ A++ Sbjct: 545 SQLQLPQAATD 555 >gi|293610078|ref|ZP_06692379.1| predicted protein [Acinetobacter sp. SH024] gi|292827310|gb|EFF85674.1| predicted protein [Acinetobacter sp. SH024] Length = 758 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 10/175 (5%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-- 310 R ++ ++ AL+ T L+ P++ + + A G + T S +T +T + + Sbjct: 477 RKAYGALIQALKTNTKSNLLSTPSIVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTT 536 Query: 311 ----DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPS 364 D GV L P + G + L ++ EVS + G A D+ + + R T V Sbjct: 537 VERKDVGVTLKVVPHIGEGGTVRLEVEQEVSAVQDSRG-QAADLVTSK-RAIKTAVLAEH 594 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T+VL GL+ DD ++GIP LS IP +G LFR+ + + + + P +V Sbjct: 595 GQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649 >gi|254496546|ref|ZP_05109416.1| type II protein secretion LspD [Legionella drancourtii LLAP12] gi|254354245|gb|EET12910.1| type II protein secretion LspD [Legionella drancourtii LLAP12] Length = 482 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/260 (23%), Positives = 115/260 (44%), Gaps = 35/260 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKF 238 K+V+ L+I Q+ ++ +AE+ ++ +G + TG +SG FA Sbjct: 184 KRVIAQLDIKPA-QLLIEALVAEINQEDANDLGIEWGSDQQTGKASGFRNGFAII---NS 239 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-----H 293 ++G DF + ++AL RA L+ P++ + + A G Q Sbjct: 240 QTKGADFQAQ-----------IYALARAHKANILSTPSVVVLDNRQAKILVGKQVSVASS 288 Query: 294 LYKTVSSSTGATS--VTTHD-YGVVLHF--TPTVLSPGRIGLRIQ--TEVSEPVIGVNAG 346 Y ++ T A+S TT D V LH P + I ++I + +P + Sbjct: 289 NYPNNANGTAASSSPYTTFDRVNVALHLYVRPQITRGNGIQMQIDQGNDTLDPPVAAETS 348 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P++R+ T+V + SG +VL GL +D + +P+L IP +G LF+ + R+ Sbjct: 349 TTPTFRISSIVTSVHVESGNVVVLGGLTQDSLSNDNNRLPILGDIPGIGRLFKRNVNTRD 408 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + +KP+ +R+ Sbjct: 409 KRVLMV-----FIKPIILRN 423 >gi|269959419|ref|ZP_06173802.1| general secretion pathway protein D [Vibrio harveyi 1DA3] gi|269835856|gb|EEZ89932.1| general secretion pathway protein D [Vibrio harveyi 1DA3] Length = 675 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 33/246 (13%) Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + SG + AA GG G S+ + ++ A+ + L+ P++T + Sbjct: 416 TESGDYSTLAAALGG---VNGAAMSIM----MGDWTALITAVSSDSNSNILSSPSITVMD 468 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPGRIGLR 331 ASF G + V TG+T+ + +D G+ L P + + L Sbjct: 469 NGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLN 523 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 I+ EVS V+G N + R+ +T+V + G +VL GL+ + + + +PLL I Sbjct: 524 IEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDI 582 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P++G LF+++ E+ + + +KP +RD D + + F R ++ Sbjct: 583 PVIGQLFKSTSTQTEKRNLMV-----FIKPTIIRDGMTADGITQ-----RKYNFIRAEQL 632 Query: 452 YGPKEA 457 Y +E Sbjct: 633 YKAQEG 638 >gi|156972923|ref|YP_001443830.1| general secretion pathway protein D [Vibrio harveyi ATCC BAA-1116] gi|156524517|gb|ABU69603.1| hypothetical protein VIBHAR_00601 [Vibrio harveyi ATCC BAA-1116] Length = 658 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 26/212 (12%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + ++ A+ + L+ P++T + ASF G + V TG+TS + +D Sbjct: 426 WTALITAVSSDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTSGSNNDNPFQ 480 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L I+ EVS V+G N + R+ +T+V + G Sbjct: 481 TVDRKEVGIKLKVVPQINEGDSVQLTIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDG 539 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL GL+ + + + +PLL IP++G LF+++ E+ + + +KP +R Sbjct: 540 QMLVLGGLVDERALESESKVPLLGDIPVIGQLFKSTSTQTEKRNLMV-----FIKPTIIR 594 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 D D + + F R ++Y +E Sbjct: 595 DGMTADGITQ-----RKYNFIRAEQLYKAQEG 621 >gi|94500433|ref|ZP_01306965.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65] gi|94427468|gb|EAT12446.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65] Length = 524 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/272 (23%), Positives = 118/272 (43%), Gaps = 28/272 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ ++ ++ ++ QV ++ I EV + Q G Q G +S S F Sbjct: 232 SAVEQFLDKAQLSLNKQVIIEAKILEVTLNDGYQAGIQWD--GLASSGSTEFTPSLSATT 289 Query: 239 VSEGGDFSVKGVLD-RFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + D + G+ F+ F V+ L+R ++ L+ P ++ ++ Q A G Sbjct: 290 LRNPDD--IDGIFSLAFTGSDFTGVIQLLKRQGKVQVLSSPRISTVNNQKAVIKVGTDEF 347 Query: 295 Y-----------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340 + T +S+ ++T G+ L TP + + L + V+E V Sbjct: 348 FVTDVSNDTTTTTTTTSTNPEVTLTPFFSGIALDVTPQISENNDVILHVHPSVTEVVERN 407 Query: 341 ----IGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +G + ++P +R+ D+ + +G +V+ GLL+D + +P L++IPIL Sbjct: 408 KVIELGDDIFNLPLAVSSIRETDSIIRARNGQVVVIGGLLQDKQSRTDASVPWLARIPIL 467 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GALFR S ++E+ I P +V +D Sbjct: 468 GALFRQSDQESTKSELVILLQPKVVDEDTWQD 499 >gi|194290974|ref|YP_002006881.1| fimbrial type IV assembly protein pilq precursor [Cupriavidus taiwanensis LMG 19424] gi|193224809|emb|CAQ70820.1| Fimbrial type IV assembly protein pilQ precursor [Cupriavidus taiwanensis LMG 19424] Length = 710 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 4/167 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + + A G + Y+ +SS GATSV + L T Sbjct: 547 LSALEADGKGKIISSPRVVTANNIKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVT 605 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ +G+ + + T V + +GGT+V+ G+ Sbjct: 606 PQITPEGNVLLDV--DVNKDSVGIQTTSGFAIDTKHVQTQVLVENGGTVVIGGIYTQTES 663 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKPVAMR 425 + +PLL IP+LG LF+N+ R TE+ + TP L + V++R Sbjct: 664 TDVDKVPLLGDIPVLGYLFKNNAKVRNRTELLVFLTPRILNESVSLR 710 >gi|218778338|ref|YP_002429656.1| type IV pilus secretin PilQ [Desulfatibacillum alkenivorans AK-01] gi|218759722|gb|ACL02188.1| Type IV pilus secretin PilQ [Desulfatibacillum alkenivorans AK-01] Length = 844 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 3/179 (1%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G +FS L S L+A E I+ ++ P + + + A+ G + K Sbjct: 664 GFNFSRLLGLTPLSLNATLNAAESRGEIKIVSSPKIRTLDNKPATIKQGIDYPIKQFDGD 723 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 G T + + L TP V R+ +++ E ++ +G + S+ ++ DT + Sbjct: 724 -GNTVIVYKAVDLQLEVTPHVTQDRRVSMKMTVEKND--VGAVISEEQSFNTKEVDTELL 780 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G T+V+ G++K + +G P L +P+LG LF++S + E E+ + TP +V+ Sbjct: 781 VNDGDTVVIGGIIKTTFRDDVDGWPGLIDVPVLGWLFKDSTKSEEREELLVFITPTIVE 839 >gi|328468919|gb|EGF39879.1| putative type III secretion protein YscC [Vibrio parahaemolyticus 10329] Length = 628 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 16/233 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248 + ++ + ++I ++ + L+Q+G TG S G ++ D V+ G S K Sbjct: 296 QSRIEVALSIVDISANDLRQLGVDWR-TGVSVGNNRIVDIKTTGDVDNGDVTLGSGQSFK 354 Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +LD + +L LE + + ++ PTL A + K V T A Sbjct: 355 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 414 Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T YG +L P ++ + I L + E + D+PS R + T Sbjct: 415 EEVT--YGTLLRIVPRIVGDRFATRPEINLSLHLEDGTKIPDGGVDDLPSVRKTEISTLA 472 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412 + G ++++ G+ +D++ +PLL IP LGALFR N+ R +FI Sbjct: 473 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFI 525 >gi|186897240|ref|YP_001874352.1| putative outer membrane porin HofQ [Yersinia pseudotuberculosis PB1/+] gi|186700266|gb|ACC90895.1| type IV pilus secretin PilQ [Yersinia pseudotuberculosis PB1/+] Length = 500 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G Y A ++ + + + TP +L G+I L Sbjct: 349 IASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNGKIILD 408 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P I + G+ + K + T V + G TIVL G+ + +Q +PLL+ Sbjct: 409 LKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQSVNKVPLLA 468 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LGA+FR + E+ I TP L+ Sbjct: 469 DIPLLGAMFRQDTQQQSRRELVIFITPKLI 498 >gi|154147986|ref|YP_001406614.1| type II and III secretion system protein [Campylobacter hominis ATCC BAA-381] gi|153803995|gb|ABS51002.1| type II and III secretion system protein [Campylobacter hominis ATCC BAA-381] Length = 541 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 19/186 (10%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GAT 305 F+ + +++ LE + ++ P +T ++ Q A + G Y+ ++T G T Sbjct: 332 NFNIDGMINFLETKGKTKIISSPKVTTMNNQPAIISVGDVINYRIQENTTSGGQTDAGTT 391 Query: 306 SVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVS--------EPVIGVNAGDMPSYRV 353 SVT +Y G++L+ P + RI LR+ +S E ++ P Sbjct: 392 SVTYTNYSTFIGILLNILPEISDDNRIMLRVNPSLSDFKYQADREATAQLDRVMAPDTIQ 451 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 +K + V + G T++L GL+ + + + +P LS IP++G LF+++ TE+ Sbjct: 452 KKISSVVWVDDGDTVILGGLIGQNKGKDNKNVPFLSDIPLIGNLFKSTADRLTTTELVFV 511 Query: 414 ATPFLV 419 TP ++ Sbjct: 512 ITPRII 517 >gi|134093313|ref|YP_001098388.1| putative secretion pathway protein [Herminiimonas arsenicoxydans] gi|133737216|emb|CAL60259.1| putative bacterial secretion pathway protein [Herminiimonas arsenicoxydans] Length = 656 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 14/155 (9%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSST-GATSVTTHD--YGVVLHFTPTVLSPGRI 328 LA PTL AI G + F SG VS+S G T++ D +G+ L TPT L GR+ Sbjct: 423 LARPTLAAIEGLPSEFFSGTNLSAGLVSTSQQGGTTIVPLDKRFGIKLSVTPTFLPQGRV 482 Query: 329 GLRIQTEVSEPVIGVNAGDMPS---YRVR----KADTTVELPSGGTIVLAGLLKDDIQQL 381 L+I+ + + +NA S Y++ A+ V + G T++L+GL + Sbjct: 483 QLKIEAQRT----ALNASSETSRVAYQIEIGELTANANVVMNLGETLLLSGLSEKTRTST 538 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 ++G+P L +P++ LF N + N + I TP Sbjct: 539 RDGVPGLQDVPVVQYLFSNKKTNDLQRSALILITP 573 >gi|29840703|ref|NP_829809.1| general secretion pathway protein D [Chlamydophila caviae GPIC] gi|29835053|gb|AAP05687.1| general secretion pathway protein D [Chlamydophila caviae GPIC] Length = 753 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 23/219 (10%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV---LSP 325 +R A P++ ++ Q+ + + + + VS+ YG+++ P + Sbjct: 537 VRINASPSVVTMN-QTPARIAIVEEMSIAVSADKEKAQYNRAQYGIMIKMLPVINVGEED 595 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G+ + ++T+++ G NA + P R V +P G T+++ GL + ++GI Sbjct: 596 GKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVIIGGLRCKHVSDSQDGI 655 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKPVAMRDL-------SRPDDH---- 433 P L +IP +G LF + + +TE+F+ TP L P ++ SRP ++ Sbjct: 656 PFLGEIPGVGKLFGMNSTSDSQTEMFVFITPKILDNPAEKKERHEEAVLSSRPGENIEFR 715 Query: 434 ---YSVEDDAKAFF--FNRVNKIYGPKEASEVEGQNYKG 467 ++ E+ AKA ++ I P AS+VEG Y G Sbjct: 716 KALFAGEEAAKAAHKKLELISAIELP--ASQVEGLEYDG 752 >gi|94496443|ref|ZP_01303020.1| type II and III secretion system protein [Sphingomonas sp. SKA58] gi|94424189|gb|EAT09213.1| type II and III secretion system protein [Sphingomonas sp. SKA58] Length = 726 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 23/197 (11%) Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G GG G+ F +++A++ T L+ P++ + Q AS G Q Sbjct: 452 GAIAGLGGSIGSNGI-----FGAIINAVKSDTESNLLSTPSVMTLDNQKASILVGQQ--- 503 Query: 296 KTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 V +TG +V D G+ L P + + G I L ++ EVS V G + Sbjct: 504 --VPVTTGEALSQNFDNQFRTVQRQDVGIKLEVKPQINTGGAIKLFLRQEVSS-VAGPVS 560 Query: 346 GDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 D + R+ +TTV + G + L GLL D+ ++ E IPLLS IP +G LF++ Sbjct: 561 NDNSDLIINKREIETTVTVDDGEILALGGLLDDNERKTIERIPLLSDIPGIGELFKSRSR 620 Query: 404 NREETEIFIAATPFLVK 420 +R +T + + P +++ Sbjct: 621 SRTKTNLMVFIRPTILR 637 >gi|170022485|ref|YP_001718990.1| putative outer membrane porin HofQ [Yersinia pseudotuberculosis YPIII] gi|169749019|gb|ACA66537.1| type IV pilus secretin PilQ [Yersinia pseudotuberculosis YPIII] Length = 460 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G Y A ++ + + + TP +L G+I L Sbjct: 309 IASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNGKIILD 368 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P I + G+ + K + T V + G TIVL G+ + +Q +PLL+ Sbjct: 369 LKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQSVNKVPLLA 428 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LGA+FR + E+ I TP L+ Sbjct: 429 DIPLLGAMFRQDTQQQSRRELVIFITPKLI 458 >gi|103485810|ref|YP_615371.1| type II and III secretion system protein [Sphingopyxis alaskensis RB2256] gi|98975887|gb|ABF52038.1| type II and III secretion system protein [Sphingopyxis alaskensis RB2256] Length = 732 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 17/194 (8%) Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G F GD + F +++A++ T LA P + + Q A F G Q + Sbjct: 457 GGFAGFAGDIGKNTI-----FGAIINAVKSDTTSNLLATPHIVTLDNQPAKFLVG-QDVP 510 Query: 296 KTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAG 346 T G +V + G+ L TP V G + + ++ EVS PV N+ Sbjct: 511 ITTGEQLGDNFENAFRTVQREEVGIKLEVTPQVNGAGEVKMFLRQEVSSVAGPVSSRNSD 570 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + R + TV+ G + + GLL DD ++ E IPLLS IP++G LF++ R Sbjct: 571 LILNKRAFETVLTVD--DGEILAIGGLLNDDERRTIERIPLLSDIPLIGELFKSRSRTRA 628 Query: 407 ETEIFIAATPFLVK 420 +T + + P ++K Sbjct: 629 KTNLMVFIRPTILK 642 >gi|39996877|ref|NP_952828.1| type II secretion system protein [Geobacter sulfurreducens PCA] gi|39983765|gb|AAR35155.1| type II secretion system protein, putative [Geobacter sulfurreducens PCA] gi|298505890|gb|ADI84613.1| type II secretion system secretin lipoprotein PulQ [Geobacter sulfurreducens KN400] Length = 822 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 12/182 (6%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGR 327 L+ P + + + + FT G + T SS+ VT + D GV L+ P + Sbjct: 428 LSNPKIRVKNREKSKFTVGTRVPITTTSSTGSVGGVTVNVQYVDVGVKLNAEPVIQLNNE 487 Query: 328 IGLRIQTEVSEPVIG---VNAGDMPSYRV----RKADTTVELPSGGTIVLAGLLKDDIQQ 380 + +++ EVS +IG V +GD S V R DT + L G T ++ GL++D + Sbjct: 488 VTIKLGVEVSS-IIGEKTVGSGDAISSVVTIGTRNVDTVLNLKDGETSIIGGLIEDTKSK 546 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 K+ I LL IP++G+L + +++E+ +A TP +V+ V++ + EDD Sbjct: 547 SKQKIWLLGDIPLIGSLLSSHNDRYDKSELVLAITPRIVRAVSVPEADVAAFWSGKEDDP 606 Query: 441 KA 442 A Sbjct: 607 TA 608 >gi|59712900|ref|YP_205676.1| pili ecretion protein PilQ [Vibrio fischeri ES114] gi|59481001|gb|AAW86788.1| pili ecretion protein PilQ [Vibrio fischeri ES114] Length = 582 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 3/150 (2%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 ++ P L + + A G + Y SSS GATSV+ + L TP + R+ L Sbjct: 432 ISSPRLITTNKKPAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVTPQITPDNRLVLD 490 Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + P V+ G+ + ++ T V + +G T+VL G+ + + E +P+L Sbjct: 491 LTVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVDNGETVVLGGIYQHSLSNSVEKVPVLG 550 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+LGALFR S N + E+ I TP +V Sbjct: 551 DLPLLGALFRRSSENIGKKELLIFVTPKVV 580 >gi|239905312|ref|YP_002952051.1| hypothetical protein DMR_06740 [Desulfovibrio magneticus RS-1] gi|239795176|dbj|BAH74165.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 707 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 14/175 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 E L AL + ++ L+ PT+T + SA +G Y VS+S T+V + Sbjct: 516 LEAQLTALAESNKVKILSSPTITTMENHSAFVENGMDVPY--VSTSQNGTNVQFAHATLK 573 Query: 316 LHFTPTVLSPGRIGLRI-----QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L P V+ + ++I Q + + V G P R+ + + + G TIV+ Sbjct: 574 LEMLPHVVDNSNLRMKIVVKDDQVDTTNTVQG-----NPFIYKRETQSNLVVEDGDTIVI 628 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRN--SRFNREETEIFIAATPFLVKPVA 423 +GL +D + + G+P LS IP LG F+ S REE IF+ T KP++ Sbjct: 629 SGLTRDTVGDNEAGVPYLSDIPGLGWAFKTKASSIKREEIYIFVTPTILKEKPIS 683 >gi|54310534|ref|YP_131554.1| putative type II secretory pathway, component EpsD [Photobacterium profundum SS9] gi|46914977|emb|CAG21752.1| putative type II secretory pathway, component EpsD [Photobacterium profundum SS9] Length = 670 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 21/181 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + +++A+ + L+ P++T + ASF G + V TG+TS +++D Sbjct: 440 WTMLVNAVATDSNSNILSSPSITVLDNSEASFIVG-----EEVPVVTGSTSSSSNDNPFQ 494 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L+ TP + + L+I+ EVS V+G + + R+ +TTV + G Sbjct: 495 TVERKEVGIKLNVTPQINEGDSVQLKIEQEVSS-VLGASGAVDVRFAKRQINTTVLVKDG 553 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 I L GL+ ++ ++ + IP+L IP LG LF+++ +T + + +KP +R Sbjct: 554 QMIALGGLISEETKESESKIPILGDIPFLGFLFKSTNTTTAKTNLMV-----FIKPTIIR 608 Query: 426 D 426 D Sbjct: 609 D 609 >gi|153947341|ref|YP_001402915.1| outer membrane porin HofQ [Yersinia pseudotuberculosis IP 31758] gi|152958836|gb|ABS46297.1| protein transporter HofQ [Yersinia pseudotuberculosis IP 31758] Length = 458 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G Y A ++ + + + TP +L G+I L Sbjct: 307 IASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNGKIILD 366 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P I + G+ + K + T V + G TIVL G+ + +Q +PLL+ Sbjct: 367 LKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQSVNKVPLLA 426 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LGA+FR + E+ I TP L+ Sbjct: 427 DIPLLGAMFRQDTQQQSRRELVIFITPKLI 456 >gi|145597400|ref|YP_001161475.1| putative outer membrane porin HofQ [Yersinia pestis Pestoides F] gi|165928024|ref|ZP_02223856.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. F1991016] gi|166010419|ref|ZP_02231317.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. E1979001] gi|108781223|gb|ABG15281.1| putative membrane transport protein [Yersinia pestis Antiqua] gi|145209096|gb|ABP38503.1| membrane transport protein [Yersinia pestis Pestoides F] gi|165919973|gb|EDR37274.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. F1991016] gi|165990509|gb|EDR42810.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. E1979001] Length = 450 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G Y A ++ + + + TP +L G+I L Sbjct: 299 IASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNGKIILD 358 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P I + G+ + K + T V + G TIVL G+ + +Q +PLL+ Sbjct: 359 LKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQSVNKVPLLA 418 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LGA+FR + E+ I TP L+ Sbjct: 419 DIPLLGAMFRQDTQQQSRRELVIFITPKLI 448 >gi|253998742|ref|YP_003050805.1| type II and III secretion system protein [Methylovorus sp. SIP3-4] gi|253985421|gb|ACT50278.1| type II and III secretion system protein [Methylovorus sp. SIP3-4] Length = 675 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/264 (24%), Positives = 119/264 (45%), Gaps = 22/264 (8%) Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFG---GKFVSEGG 243 N + +V L++ + E+ R L+++G + + I+ +S P + A G V+ Sbjct: 326 NDLADPEVMLEIEVLEISRSRLQELGIAYPNQISVNSRIPVTTSTAGSGIAVTSTVATDS 385 Query: 244 DFSVKGVLD----RFSFETVLHALERATA--IRTLAEPTLTAISGQSASFTSGGQHLYKT 297 +++G+L+ RF R T + ++ P + + + A G + T Sbjct: 386 PLTLEGLLNLNSSRFDVSPNPAVNFRKTTGDVNLISNPRIRVRNNEKAKILVGDKVPIIT 445 Query: 298 VSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSY 351 +S+ + +VT D G+ L P + + ++I EVS + N + + Sbjct: 446 TTSTANVGISENVTYIDVGLKLDVEPRITLDDFVNIKIGLEVSSLGDRTTTRNGATVYTI 505 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R A T + L G +LAGL++D+ ++ +P L IPILG LF N + +TEI Sbjct: 506 GTRNASTLLRLKDGEMQILAGLIQDEERKNASKLPALGDIPILGRLFSNQEDRKNKTEIV 565 Query: 412 IAATPFLVKPVAMRDLSRPDDHYS 435 +A TP + + ++ RPD S Sbjct: 566 LAITPRI-----LGNIRRPDAEIS 584 >gi|251790891|ref|YP_003005612.1| general secretion pathway protein D [Dickeya zeae Ech1591] gi|247539512|gb|ACT08133.1| general secretion pathway protein D [Dickeya zeae Ech1591] Length = 696 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 6/172 (3%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 ++ T+ +ALE LA P++ + A F G T S +T +V Sbjct: 472 NWGTLFNALESNKRNNILATPSVVTLDNHRAEFNVGQDVPILTGSQTTNNDNIFNTVQRR 531 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 G+ P + G I L I E+S VN+ + +R + V++ T+ Sbjct: 532 TIGIKFSILPRINQSGTILLNISQEISSLSDTAQVNSNLGSVFNIRTVNNVVQVQDDETV 591 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 V+ GLL D+ ++ +PLL IP LG LFR + N ++ + + P +++ Sbjct: 592 VIGGLLDDEKKETTNKVPLLGDIPWLGNLFRYTSQNNDKRNLMLFIRPRIIR 643 >gi|126640364|ref|YP_001083348.1| putative general secretion pathway protein [Acinetobacter baumannii ATCC 17978] Length = 667 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 35/258 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-------------- 240 QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 303 QVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGSAGAA 362 Query: 241 -------EGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G+ + G+ + R ++ ++ AL+ T L+ P++ + + A Sbjct: 363 SAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPSIVTMDNEEAYIVV 422 Query: 290 GGQHLYKTVSSSTGATSVTTH------DYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVI 341 G + T S +T +T + + D GV L P + G + L ++ EVS + Sbjct: 423 GQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRLEVEQEVSAVQDSR 482 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G A + S R K T V G T+VL GL+ DD ++GIP LS IP +G LFR+ Sbjct: 483 GQAADLVTSKRAIK--TAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRLFRSD 540 Query: 402 RFNREETEIFIAATPFLV 419 + + + + P +V Sbjct: 541 NRSNVKRNLLVFIHPTIV 558 >gi|330815113|ref|YP_004358818.1| secretion type II protein gspD [Burkholderia gladioli BSR3] gi|327367506|gb|AEA58862.1| secretion type II protein gspD [Burkholderia gladioli BSR3] Length = 847 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 14/144 (9%) Query: 295 YKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMP 349 + + ++STG + SV D G+ L+ PTV +G+++ EVS +G Sbjct: 478 FTSTATSTGFLSQSVNYLDIGLTLNVEPTVYLDDTVGIKLALEVSS--LGNTITTTTGTA 535 Query: 350 SYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +Y++ R A T ++L +G T VLAGL+ ++ + +P L ++P+LG LF + + Sbjct: 536 AYQIGTRTASTVLQLKNGETDVLAGLIDNEERTSGNKLPGLGQLPVLGRLFGATDDQAKN 595 Query: 408 TEIFIAATPFLVKPVAMRDLSRPD 431 TEI +A TP LV R++ RPD Sbjct: 596 TEIVLAITPHLV-----RNIRRPD 614 >gi|332305113|ref|YP_004432964.1| type IV pilus secretin PilQ [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172442|gb|AEE21696.1| type IV pilus secretin PilQ [Glaciecola agarilytica 4H-3-7+YE-5] Length = 580 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 11/163 (6%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE +A P +T ++ Q ++ G + S+S+GATSV + L T Sbjct: 413 LSALESENKGEVIASPRIT-VANQREAYIEQGTEIPYVQSTSSGATSVEFKKAVLSLKVT 471 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-- 375 P + RI L + + + + G + ++ T V + +G TIVL G+ + Sbjct: 472 PHITPDHRIILDLVVTQDTRGDTVNTSTGLAVAIDTQEISTQVLVNNGETIVLGGIFQQT 531 Query: 376 --DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DD+ Q +PLL IP+LG LF+N++ E+ E+ I TP Sbjct: 532 STDDVSQ----VPLLGDIPVLGHLFKNTQTVNEKRELLIFVTP 570 >gi|313200821|ref|YP_004039479.1| type II and iii secretion system protein [Methylovorus sp. MP688] gi|312440137|gb|ADQ84243.1| type II and III secretion system protein [Methylovorus sp. MP688] Length = 671 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/264 (24%), Positives = 119/264 (45%), Gaps = 22/264 (8%) Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFG---GKFVSEGG 243 N + +V L++ + E+ R L+++G + + I+ +S P + A G V+ Sbjct: 322 NDLADPEVMLEIEVLEISRSRLQELGIAYPNQISVNSRIPVTTSTAGSGIAVTSTVATDS 381 Query: 244 DFSVKGVLD----RFSFETVLHALERATA--IRTLAEPTLTAISGQSASFTSGGQHLYKT 297 +++G+L+ RF R T + ++ P + + + A G + T Sbjct: 382 PLTLEGLLNLNSSRFDVSPNPAVNFRKTTGDVNLISNPRIRVRNNEKAKILVGDKVPIIT 441 Query: 298 VSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSY 351 +S+ + +VT D G+ L P + + ++I EVS + N + + Sbjct: 442 TTSTANVGISENVTYIDVGLKLDVEPRITLDDFVNIKIGLEVSSLGDRTTTRNGATVYTI 501 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R A T + L G +LAGL++D+ ++ +P L IPILG LF N + +TEI Sbjct: 502 GTRNASTLLRLKDGEMQILAGLIQDEERKNASKLPALGDIPILGRLFSNQEDRKNKTEIV 561 Query: 412 IAATPFLVKPVAMRDLSRPDDHYS 435 +A TP + + ++ RPD S Sbjct: 562 LAITPRI-----LGNIRRPDAEIS 580 >gi|300690947|ref|YP_003751942.1| type II secretory pathway, gspd-related protein [Ralstonia solanacearum PSI07] gi|299078007|emb|CBJ50649.1| putative type II secretory pathway, gspd-related protein [Ralstonia solanacearum PSI07] Length = 759 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 13/170 (7%) Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328 LA P + A + + A G + + T S+STG + SV D G+ L P++ + Sbjct: 404 LANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEV 463 Query: 329 GLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 ++I EVS I +G + +Y++ R A+T ++L G T +LAGL+K Sbjct: 464 SMKINLEVSSLTNQITTRSGTV-AYQIGTRTANTVLKLHDGETQLLAGLIKTQQTSSAAR 522 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 IP L IP+LG LF + N EI ++ TP +VKP RPD ++ Sbjct: 523 IPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPS-----HRPDTNF 567 >gi|255067346|ref|ZP_05319201.1| type IV pilus biogeneis protein PilQ [Neisseria sicca ATCC 29256] gi|255048497|gb|EET43961.1| type IV pilus biogeneis protein PilQ [Neisseria sicca ATCC 29256] Length = 711 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 2/164 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + A E +T++ P + + A+ SG + Y+ SSS GATSV+ + L T Sbjct: 543 ISASEATGKSKTISNPRVLTQDRREATIESGTEIPYQEASSS-GATSVSFKKAVLGLTVT 601 Query: 320 PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P V G+I + ++ PV V++ + + +T + GGT+++ G+ ++D Sbjct: 602 PNVTPDGQIIMTVKITKDTPVDCTVDSLITKCIQTKNLNTQAMVEDGGTLIVGGIYEEDN 661 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +PLL IP++G LF++ E E+ I TP ++ V Sbjct: 662 SDTINKVPLLGDIPVVGNLFKSRAKKEERRELLIFITPRIMDGV 705 >gi|15606504|ref|NP_213884.1| general secretion pathway protein D [Aquifex aeolicus VF5] gi|2983708|gb|AAC07271.1| general secretion pathway protein D [Aquifex aeolicus VF5] Length = 625 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 25/267 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-------KSFAADFGGKFV----SEGG 243 Q+ L TI E + + G + I G+ G + + A G FV S+ G Sbjct: 335 QLLLTATIIEASAKSILEAGIRWQILGTHGGAAFKGSSLQDVYNAIKSGNFVIGGFSKSG 394 Query: 244 DFSVKGVLDRFSFETVL--HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSS 300 G +D F + V LE+ T ++ P + + Q A G + T + Sbjct: 395 TTVSIGGIDFFFPDLVFLFSLLEQGTGFNVVSNPKILTLDNQEALIKVGQVVPFPTGIKY 454 Query: 301 STGATSVTTHDY---GVVLHFTPTVLSPGR---IGLRIQT---EVSEPVIGVNAGDMPSY 351 + T+DY G+ L TP + I L++Q ++ V GVN +P Sbjct: 455 DVNGNPIITYDYKDVGLELKITPRITGETVRLVIELKLQEITGYLTNEVSGVNY-TVPIT 513 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ ++ V + +G T+V+ GL+ + E IP L IP++G LFR R +++T +F Sbjct: 514 SNRELNSDVVVENGRTVVIGGLISRKSLKSTEKIPGLGDIPVMGRLFRYDRDEKDKTSLF 573 Query: 412 IAATPFLV-KPVAMRDLSRPDDHYSVE 437 I TP+++ P + L++ + + E Sbjct: 574 IFLTPYVITSPQELAKLTQEHEKLARE 600 >gi|162419434|ref|YP_001608044.1| putative outer membrane porin HofQ [Yersinia pestis Angola] gi|165936209|ref|ZP_02224778.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. IP275] gi|166213214|ref|ZP_02239249.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. B42003004] gi|167399124|ref|ZP_02304648.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418934|ref|ZP_02310687.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425621|ref|ZP_02317374.1| protein transporter HofQ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470614|ref|ZP_02335318.1| protein transporter HofQ [Yersinia pestis FV-1] gi|229836369|ref|ZP_04456536.1| predicted fimbrial transporter [Yersinia pestis Pestoides A] gi|229840006|ref|ZP_04460165.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842087|ref|ZP_04462242.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis str. India 195] gi|229904612|ref|ZP_04519723.1| predicted fimbrial transporter [Yersinia pestis Nepal516] gi|162352249|gb|ABX86197.1| protein transporter HofQ [Yersinia pestis Angola] gi|165915823|gb|EDR34431.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. IP275] gi|166205512|gb|EDR49992.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. B42003004] gi|166962928|gb|EDR58949.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051628|gb|EDR63036.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055311|gb|EDR65105.1| protein transporter HofQ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678730|gb|EEO74835.1| predicted fimbrial transporter [Yersinia pestis Nepal516] gi|229690397|gb|EEO82451.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis str. India 195] gi|229696372|gb|EEO86419.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706437|gb|EEO92444.1| predicted fimbrial transporter [Yersinia pestis Pestoides A] gi|320013284|gb|ADV96855.1| putative fimbrial transporter [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 500 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G Y A ++ + + + TP +L G+I L Sbjct: 349 IASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNGKIILD 408 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P I + G+ + K + T V + G TIVL G+ + +Q +PLL+ Sbjct: 409 LKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQSVNKVPLLA 468 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LGA+FR + E+ I TP L+ Sbjct: 469 DIPLLGAMFRQDTQQQSRRELVIFITPKLI 498 >gi|254360608|ref|ZP_04976757.1| competence protein E [Mannheimia haemolytica PHL213] gi|153091148|gb|EDN73153.1| competence protein E [Mannheimia haemolytica PHL213] Length = 437 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/288 (22%), Positives = 130/288 (45%), Gaps = 36/288 (12%) Query: 164 SETFLSQSGR---NQYANS-----SSKKVMNLLNIAGE-----DQVTLKVTIAEVRRDIL 210 S TFLS++G ++ +NS S+K + N+ N+ + +Q+ ++ I + + L Sbjct: 143 SGTFLSENGYIHFDERSNSLIVKDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHL 202 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGK----------------FVSEGGDFSVKGV--LD 252 +++G + I +G K FGG+ F GG +V V ++ Sbjct: 203 QELGVRWGIFSRGAGHYK-----FGGRLEGNGLNNVTNNLNVNFPITGGASAVLQVSSIN 257 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + L ALE+ ++ +A P L + + AS G + Y ++ + AT V + Sbjct: 258 SRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEA 317 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 + L P + + +I L + + P + + + ++ +T V G TIVL G Sbjct: 318 VLGLEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGG 377 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + Q+ ++ +P+L IP + LF +R + E+ I TP++++ Sbjct: 378 IFQHLTQKGEDKVPILGSIPFIKRLFSQTRDKISKRELVIFVTPYILQ 425 >gi|119476010|ref|ZP_01616362.1| type II and III secretion system protein [marine gamma proteobacterium HTCC2143] gi|119450637|gb|EAW31871.1| type II and III secretion system protein [marine gamma proteobacterium HTCC2143] Length = 630 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 72/305 (23%), Positives = 131/305 (42%), Gaps = 38/305 (12%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN--IAGED----QVTLK 199 +L + ++IQ +Q+ + + + + N ++ ++ + I+ D QV ++ Sbjct: 281 ILENLAKSIQSNQKDTDSNISIEASKSANALVINAPPSILTTMKSIISQLDIRRAQVMVE 340 Query: 200 VTIAEVRRDILKQIGF------QHSITGS---------SSGPSKSFAADFGGKFVSEGGD 244 + EVR ++ +G +SI G+ ++ PS A F S G Sbjct: 341 AILVEVRGELASDVGVTWITDPDNSIVGAVNTLGNLPLANAPSDGSALPF-----SAGRG 395 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLYKT 297 F+ G + + L AL L+ PT+ AI + AS G GQ Sbjct: 396 FTF-GYFNGGDLQAALRALSATQNANILSTPTIVAIDNEEASLLVGQNVPFITGQATSSA 454 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI--QTEVSEPVIGVNAGDMPSYRVRK 355 S++ T++ D G L TP + I L I +TE P I + A D+ + + R+ Sbjct: 455 SSTNDPFTTIERQDIGTSLVVTPRINQGDSITLEIHQKTETIAPSIDI-ASDIVTNK-RE 512 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T + +V+ GL+ D+ ++ E +PLL IP LG+LF + + +T + + Sbjct: 513 IITKALIRDDQVLVIGGLINDEETEIIEKVPLLGDIPYLGSLFSSKGTSHTKTNLMVFIH 572 Query: 416 PFLVK 420 P ++K Sbjct: 573 PTILK 577 >gi|238758913|ref|ZP_04620085.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236] gi|238702870|gb|EEP95415.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236] Length = 641 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 18/203 (8%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 +++ + AL + LA P++ + A F G Q + S+ T AT S++ Sbjct: 402 NWDGLFSALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 460 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPS-YRVRKADTTVELPSGG 366 GV+L P + + L I+ EVS N ++ S + R + V + SG Sbjct: 461 QPVGVMLKVKPQINQGDSVLLEIRQEVSSVADSTDTNTNNLGSVFNKRVVNNAVLVRSGE 520 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T+V+ GLL ++ +P L IP++G LFR ++ E + + + +KP +R+ Sbjct: 521 TVVVGGLLDKKTNRIINKVPFLGDIPLIGGLFRQTKEKVERSNLIL-----FIKPTILRE 575 Query: 427 LSRPDDHYSVEDDAKAFFFNRVN 449 + D YS+ K +N N Sbjct: 576 V----DDYSLVTSGKYSEYNVSN 594 >gi|257095715|ref|YP_003169356.1| type IV pilus secretin PilQ [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048239|gb|ACV37427.1| type IV pilus secretin PilQ [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 703 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 1/164 (0%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 T + ALE + ++ P + + A G + Y+ +SS GATSV+ + Sbjct: 534 LNTEISALEADGRGKVISSPRVMTANNIEALIEQGVEIPYQQATSS-GATSVSFKKAVLS 592 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + G + ++++ P +N G + + T V + +GGT+V+ G+ Sbjct: 593 LKVTPQITPDGNVTMKVEVNKDTPNTRLNTGAGVAIDNKHVKTEVLVENGGTVVIGGIYT 652 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +++ + IP +P +G LF++ + ++ E+ I TP +V Sbjct: 653 QEVRNNTQRIPFFGDLPYIGWLFKSREWIDDKQELLIFITPRIV 696 >gi|307131443|ref|YP_003883459.1| general secretion pathway protein D [Dickeya dadantii 3937] gi|306528972|gb|ADM98902.1| General secretion pathway protein D [Dickeya dadantii 3937] Length = 696 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 6/172 (3%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 S+ ++ +ALE LA P++ + A F G T S +T +V Sbjct: 471 SWGSLFNALESNKRNNILATPSVVTLDNHRAEFNVGQDVPILTGSQTTNNDNIFNTVQRR 530 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 G+ P + G I L I E+S VN+ + +R + V++ T+ Sbjct: 531 TIGIKFSILPRINQSGTILLNISQEISSLSDTSQVNSNLGSVFNIRTVNNVVQVQDDETV 590 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 V+ GLL D+ ++ +PLL IP LG LFR + N ++ + + P +++ Sbjct: 591 VIGGLLDDEKKETANKVPLLGDIPWLGNLFRYTSQNNDKRNLMLFIRPRIIR 642 >gi|323494567|ref|ZP_08099671.1| general secretion pathway protein D [Vibrio brasiliensis LMG 20546] gi|323311170|gb|EGA64330.1| general secretion pathway protein D [Vibrio brasiliensis LMG 20546] Length = 674 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 21/181 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + ++ A+ + L+ P++T + ASF G + V TG+T+ + +D Sbjct: 444 WTALISAVSTDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 498 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L I+ EVS V+G N + R+ +T+V + G Sbjct: 499 TVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVEDG 557 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 IVL GL+ + + + +PLL IP LG LF+++ E+ + + +KP +R Sbjct: 558 AMIVLGGLIDERALESESKVPLLGDIPYLGHLFKSTSTQVEKKNLMV-----FIKPTIIR 612 Query: 426 D 426 D Sbjct: 613 D 613 >gi|28899478|ref|NP_799083.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus RIMD 2210633] gi|153839930|ref|ZP_01992597.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ3810] gi|28807714|dbj|BAC60967.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus RIMD 2210633] gi|149746550|gb|EDM57538.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ3810] gi|328471385|gb|EGF42280.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus 10329] Length = 547 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 23/187 (12%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-GQHLYKTVSSSTG---------A 304 +FE VL+ + + L+ P +TA + Q + G Q+ +SS+ G Sbjct: 338 NFEAVLNFMSTQGDLNVLSSPRITAANNQKSVIKVGTDQYFVTELSSNAGNGENSNAVPE 397 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------DMPSYR--V 353 +T G+ L TP + + G + L + EV+E V +N G +P + + Sbjct: 398 VELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSI 457 Query: 354 RKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R++D+ + G +V+ GL+K +++Q+ + +P L +P LG LFRN+ ++TE+ I Sbjct: 458 RESDSVIRAKDGDVVVIGGLMKQQNVEQVSK-VPFLGDVPALGHLFRNTSNVTQKTELVI 516 Query: 413 AATPFLV 419 P +V Sbjct: 517 LLKPTVV 523 >gi|93006993|ref|YP_581430.1| type II and III secretion system protein [Psychrobacter cryohalolentis K5] gi|92394671|gb|ABE75946.1| type II and III secretion system protein [Psychrobacter cryohalolentis K5] Length = 792 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 5/176 (2%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + G+ D F + L A++ ++ P + Q+A +SG Q Y+ S+S GA Sbjct: 615 FGLLGISD-FMLDLELSAMQADNRGEVISTPKILTSDKQTAKVSSGTQIPYQEASAS-GA 672 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T+ + + + L TP + G+IGL++ P I N + + T V + Sbjct: 673 TTTSFKEAALSLEATPNITPDGKIGLQLLITNGTPTIINNQVAIAEDSI---STNVIVED 729 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G TIVL G+ K+ + +P L +P +G FR + + E+ I TP L+ Sbjct: 730 GQTIVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRKDVRSNTKEELLIFITPKLIN 785 >gi|212709415|ref|ZP_03317543.1| hypothetical protein PROVALCAL_00454 [Providencia alcalifaciens DSM 30120] gi|212687930|gb|EEB47458.1| hypothetical protein PROVALCAL_00454 [Providencia alcalifaciens DSM 30120] Length = 344 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/271 (22%), Positives = 114/271 (42%), Gaps = 30/271 (11%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 I D+Q L ET+L+Q Q QV + I R L+ + Sbjct: 97 ITDTQERFALIETWLTQKDIPQ------------------QQVQITAHIISSSRTALQAL 138 Query: 214 GFQHSITGSSS--GPSKSFAADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALERATAIR 270 G + + S+ G + ++ S+ G ++ + L E L+ALE+ + Sbjct: 139 GLEWGVHNDSATDGHHSRY-----NRYSSQSGQMALNVLRLGEGLLEMKLNALEKENLLS 193 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 +A P L A AS G + Y V++S + V D + + TPT+ + + Sbjct: 194 IIASPRLVASHKNPASIQQGSEIPY--VTTSEKKSHVQFKDAVLGMEVTPTISRNDNVEM 251 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 ++ + P + + K + T+V + + T++L G+ + ++ G+P L Sbjct: 252 VLKISHNSPDTALTTNPNQHLAINKQEIATSVTIKNNNTLILGGIFQQKQEKTDSGVPFL 311 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 S+IP+LG LF N + ++ + + TP L+ Sbjct: 312 SQIPLLGNLFINKTQHVDKRVLVVFITPKLI 342 >gi|51591323|emb|CAH22989.1| putative outer membrane secretin family protein [Yersinia pseudotuberculosis IP 32953] Length = 455 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G Y A ++ + + + TP +L G+I L Sbjct: 304 IASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNGKIILD 363 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P I + G+ + K + T V + G TIVL G+ + +Q +PLL+ Sbjct: 364 LKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQSVNKVPLLA 423 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LGA+FR + E+ I TP L+ Sbjct: 424 DIPLLGAMFRQDTQQQSRRELVIFITPKLI 453 >gi|328471682|gb|EGF42559.1| general secretion pathway protein D [Vibrio parahaemolyticus 10329] Length = 674 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 101/233 (43%), Gaps = 21/233 (9%) Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 E +D+ K + +S T + D+ + GG + + ++ A+ Sbjct: 392 EEAKDVTKTESYWNSDTNKWENRQYTEEGDYSTLASALGGVNGAAMSIVMGDWTALISAV 451 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YG 313 + L+ P++T + ASF G + V TG+T+ + +D G Sbjct: 452 ASDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVG 506 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L P + + L I+ EVS V+G N + R+ +T+V + G +VL GL Sbjct: 507 IKLKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGL 565 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + + + +PLL IP+LG LF+++ E+ + + +KP +RD Sbjct: 566 VDERALESESKVPLLGDIPVLGHLFKSTSTQTEKRNLMV-----FIKPTIIRD 613 >gi|300313469|ref|YP_003777561.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum seropedicae SmR1] gi|300076254|gb|ADJ65653.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 674 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P L Q+A G + Y+ S +GAT+ + L T Sbjct: 512 LSALEAEGRGKIVSSPRLVTADQQAALIEQGEEIPYQQ-SIGSGATATAFKKANLKLEVT 570 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ G + + T V++ GGT+V+ G+ Sbjct: 571 PQITPDGNVILDV--DVNKDSRGSATPGGLAINTKHIKTKVQVEDGGTVVIGGIYTQTDN 628 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +PLL +IP+LGALFR+ R++TE+ I TP +V P Sbjct: 629 EHETRVPLLGEIPLLGALFRSRNKVRDKTELLIFLTPRIVAP 670 >gi|170717282|ref|YP_001784397.1| type IV pilus secretin PilQ [Haemophilus somnus 2336] gi|168825411|gb|ACA30782.1| type IV pilus secretin PilQ [Haemophilus somnus 2336] Length = 377 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 110/256 (42%), Gaps = 21/256 (8%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGD------ 244 +Q+ ++ I + + LK++G + I T ++ S + AA+ G + ++E + Sbjct: 122 EQIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGNLAAN-GFQHLTEQLNVNFATT 180 Query: 245 --------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + DR + L ALER + +A P L + QSAS G + Y Sbjct: 181 ATPAGSIALQIAKINDRL-LDLELTALERENNVEIIASPRLLTTNKQSASIKQGTEIPYV 239 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVR 354 + V + + L TP + I L + + P + G +M S + Sbjct: 240 ITGKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNSPGSRITYGQNEMVSIDKQ 299 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +T V G TIVL G+ D I + + +PLL IPIL LF ++ E+ I Sbjct: 300 EINTQVFAQDGETIVLGGVFHDTITKGVDKVPLLGDIPILKRLFSRESERHQKRELVIFV 359 Query: 415 TPFLVKPVAMRDLSRP 430 TP +++ ++ +P Sbjct: 360 TPRIIRSEQPNEIIKP 375 >gi|17548364|ref|NP_521704.1| putative GSPD-related protein [Ralstonia solanacearum GMI1000] gi|17430610|emb|CAD17294.1| putative gspd-related protein [Ralstonia solanacearum GMI1000] Length = 754 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 26/249 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-- 250 E +V L+V I EV+R L+ +G Q PS+ S GG ++ + Sbjct: 329 EPEVMLEVEILEVKRSRLQDLGIQL--------PSQLSLTPLAS---SSGGTLTLDDLRH 377 Query: 251 LDRFSFETVLHALE-----RATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG- 303 L+ + L T LA P + + + A G + T S++TG Sbjct: 378 LNPTRIGATVSPLNVNVNAAVTDTNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGF 437 Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV--RKADT 358 A +V D G+ L PTV + +RI EVS+ + + +G + +Y + R A T Sbjct: 438 VAENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSI-AYEIGTRNATT 496 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + L G +LAGL++D+ + +P L IP LG LF N+ ++EI ++ TP + Sbjct: 497 LLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRV 556 Query: 419 VKPVAMRDL 427 ++P +L Sbjct: 557 IRPAQRPNL 565 >gi|104779612|ref|YP_606110.1| type IV pili biogenesis protein PilQ [Pseudomonas entomophila L48] gi|95108599|emb|CAK13293.1| putative type IV pili biogenesis protein PilQ [Pseudomonas entomophila L48] Length = 412 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/166 (23%), Positives = 82/166 (49%), Gaps = 3/166 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E++ +++P + ++A G + Y+ + S GATS++ + + L T Sbjct: 245 LSAMEKSGNGEIISQPRVVTADKETARILKGTEVPYQETTKS-GATSISFREASLSLEVT 303 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G++ + ++ EP VNA ++P R + + V + +G TIV+ G+ Sbjct: 304 PQITPDGKVIMEVRVTKDEPDF-VNALNNVPPIRKNEVNAKVRVTNGETIVIGGVYSTSQ 362 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + + +P +P +G LFR +++E+ + TP ++ A+ Sbjct: 363 NNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIMSDQAI 408 >gi|15606033|ref|NP_213410.1| hypothetical protein aq_585 [Aquifex aeolicus VF5] gi|2983222|gb|AAC06820.1| hypothetical protein aq_585 [Aquifex aeolicus VF5] Length = 705 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 20/243 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 ++ ++ + EV + +L+++G S + + + + + V+ G S G+L F Sbjct: 464 KIKIRAKLVEVEKSLLRELGISWRTVFSKAYIPEFWQGETAFRTVTPGQPQS--GLLT-F 520 Query: 255 SF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 +F E L A E+ + +AE + ++G+ A +SG + VS S G + Sbjct: 521 TFQRNRLNLLEFKLLAYEQEGRAKNVAESYVITVNGEPAVISSGLEFPVTEVSLSGGIAN 580 Query: 307 V--TTHDYGVVLHFTPTVLSPGRIGLRIQ------TEVSE-PVIGVNAGDMPSYRVRKAD 357 V +VL TP VL G I L + V E PV +P + + D Sbjct: 581 VEPKYESIPIVLITTPVVLPDGNILLSVYLARRQINSVQEFPVTQTLTQKIPVFSTSRID 640 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + + +G T+V+ G ++ + G+P L ++P+LG LF+ + E+ I TP Sbjct: 641 VKIPIKNGETVVIGGAVEKSDSITESGVPKLREVPLLGWLFKTQTKQLRDRELLIFITPE 700 Query: 418 LVK 420 +++ Sbjct: 701 IIE 703 >gi|241668668|ref|ZP_04756246.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877201|ref|ZP_05249911.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843222|gb|EET21636.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 587 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 26/257 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGGKFVS 240 + V+N ++I DQV ++ I EV+R ++GF + + S PS + D Sbjct: 334 RNVINEIDIPN-DQVLIEARIVEVQRTSGLELGFNYGV----SHPSGLNVGLDTFRNPTP 388 Query: 241 EGG--DFSVKGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + G D SV R ++ E + ALE + ++ P L +S +F Sbjct: 389 KPGETDTSVVASTARLAYTLAGGLQLEMEIRALENESLANLVSSPHL-VVSNNETAFIKD 447 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---- 346 G+ + ++++GA SV + + L TP + G I + + V++ +G ++G Sbjct: 448 GKDVPYQQATASGAASVAFQEAVLELQVTPQIAPDGNIVMEVL--VTKNSVGASSGKTST 505 Query: 347 --DMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 D+P R+ T V + T+V+ G+ + + + IP L IP LG LF ++ Sbjct: 506 GEDLPPIINKREVTTKVMVKDSETVVIGGIYTKEQTETRNKIPFLGDIPYLGYLFSYTKI 565 Query: 404 NREETEIFIAATPFLVK 420 + E+ I TP +++ Sbjct: 566 EDRDAELLIFITPKIIE 582 >gi|183179752|ref|ZP_02957963.1| fimbrial assembly protein [Vibrio cholerae MZO-3] gi|183013163|gb|EDT88463.1| fimbrial assembly protein [Vibrio cholerae MZO-3] Length = 377 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q A G + Y SSS+GA++V + L T Sbjct: 215 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVT 273 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 274 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 333 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 334 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 375 >gi|260774763|ref|ZP_05883666.1| general secretion pathway protein D precursor [Vibrio coralliilyticus ATCC BAA-450] gi|260609325|gb|EEX35477.1| general secretion pathway protein D precursor [Vibrio coralliilyticus ATCC BAA-450] Length = 676 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 15/179 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A+ T L+ P++T + ASF G + + S+ G+ +V Sbjct: 444 WTALISAVSSDTNSNILSSPSITVMDNGEASFIVG-EEVPVITGSAAGSNNDNPFQTVDR 502 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + G+ L P + + L I+ EVS P A D+ S+ R+ +T+V + G Sbjct: 503 KEVGIKLKVVPQINEGNSVQLTIEQEVSNVLPATSNAAVDV-SFAKRQLNTSVMVEDGQM 561 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IVL GL+ + Q+ + +PLL IP LG LF+++ +++ + + +KP +RD Sbjct: 562 IVLGGLIDERAQESESKVPLLGDIPYLGRLFKSTSSQLQKSNLMV-----FIKPTIIRD 615 >gi|153833899|ref|ZP_01986566.1| general secretion pathway protein D [Vibrio harveyi HY01] gi|148869737|gb|EDL68714.1| general secretion pathway protein D [Vibrio harveyi HY01] Length = 681 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 26/211 (12%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + ++ A+ + L+ P++T + ASF G + V TG+T+ + +D Sbjct: 449 WTALISAVSSDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 503 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L I+ EVS V+G N + R+ +T+V + G Sbjct: 504 TVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDG 562 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL GL+ + + + +PLL IP++G LF+++ E+ + + +KP +R Sbjct: 563 QMLVLGGLVDERALESESKVPLLGDIPVIGQLFKSTSTQTEKRNLMV-----FIKPTIIR 617 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 D D + + F R ++Y +E Sbjct: 618 DGMTADGITQ-----RKYNFIRAEQLYKAQE 643 >gi|170023253|ref|YP_001719758.1| general secretion pathway protein D [Yersinia pseudotuberculosis YPIII] gi|169749787|gb|ACA67305.1| general secretion pathway protein D [Yersinia pseudotuberculosis YPIII] Length = 640 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 18/190 (9%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 +++ +L AL LA P++ + A F G Q + +S+ T T S++ Sbjct: 409 NWDVLLSALSTNKNNNILATPSIVTLDNMEAEFNVG-QEVPVLISTQTTTTDKVYNSISR 467 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366 GV+L P + + L I+ EVS VN ++ S + R + V + SG Sbjct: 468 QSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVFNKRVVNNAVLVKSGE 527 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T+V+ GLL + +P L +P++G LFR ++ E++ + + +KP +R+ Sbjct: 528 TVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLIL-----FIKPTILRE 582 Query: 427 LSRPDDHYSV 436 D YSV Sbjct: 583 ----SDDYSV 588 >gi|332139655|ref|YP_004425393.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Alteromonas macleodii str. 'Deep ecotype'] gi|327549677|gb|AEA96395.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Alteromonas macleodii str. 'Deep ecotype'] Length = 582 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 20/191 (10%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTT 309 + R F+ V++ L+ ++ L+ P +T + Q A G + T VS+S ++ +T Sbjct: 372 ISRGDFDGVINMLQTQGDVQMLSNPRVTVTNNQKAVIKVGQDEYFVTDVSTSEDQSTTST 431 Query: 310 HD----------YGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD------MPS 350 + G+ L TP + G + L + TE +E + GD + Sbjct: 432 ENENDIELTPFFSGIALDVTPQIDRSGSVILHVHPSVTETAEQTKVIQVGDQQILLPLAQ 491 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++DT + G +V+ GL++ + + PLL IP +G F+N + + E+ Sbjct: 492 SNIRESDTVIRARDGEIVVIGGLMETVTSEQESKTPLLGDIPFIGNAFKNKAKTQSKREL 551 Query: 411 FIAATPFLVKP 421 I P +V+P Sbjct: 552 VILIRPSVVQP 562 >gi|90022332|ref|YP_528159.1| peptidase M41, FtsH [Saccharophagus degradans 2-40] gi|89951932|gb|ABD81947.1| type II and III secretion system protein [Saccharophagus degradans 2-40] Length = 727 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 7/178 (3%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G F+ + F L ALE + +++P + Q AS SG + Y+ S+S Sbjct: 545 AGAFTWNVISSNFLLGMELSALENSGYAEIVSQPKVITGDKQKASIESGTEIPYQEESAS 604 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADT 358 G T+ + + + L TP + R+ + + Q +S I N+G +P + + +T Sbjct: 605 -GGTTTSFKEAVLKLEVTPQITPDNRVIMDLVINQDSISS--IDANSG-IPVIDITQLET 660 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 V + G TIVL G+ + + +PLL IP +G LFRN + ++ EI I TP Sbjct: 661 QVLVADGETIVLGGIYTTNTFTGETKVPLLGDIPFVGKLFRNDFKSEDKREILIFITP 718 >gi|17548695|ref|NP_522035.1| putative general secretion pathway GSPD-related protein [Ralstonia solanacearum GMI1000] gi|17430943|emb|CAD17625.1| putative general secretion pathway gspd-related protein [Ralstonia solanacearum GMI1000] Length = 698 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 13/170 (7%) Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328 LA P + A + + A G + + T S+STG + SV D G+ L P++ + Sbjct: 343 LANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEV 402 Query: 329 GLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 ++I EVS I +G + +Y++ R A+T ++L G T +LAGL+K Sbjct: 403 SMKINLEVSSLTNQITTRSGTV-AYQIGTRTANTVLKLHDGETQLLAGLIKTQQTSSAAR 461 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 IP L IP+LG LF + N EI ++ TP +VKP RPD ++ Sbjct: 462 IPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPS-----HRPDTNF 506 >gi|308094739|ref|ZP_05891643.2| msha biogenesis protein mshl [Vibrio parahaemolyticus AN-5034] gi|308095427|ref|ZP_05905786.2| msha biogenesis protein mshl [Vibrio parahaemolyticus Peru-466] gi|308125606|ref|ZP_05776206.2| msha biogenesis protein mshl [Vibrio parahaemolyticus K5030] gi|308126551|ref|ZP_05910862.2| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ4037] gi|308087223|gb|EFO36918.1| msha biogenesis protein mshl [Vibrio parahaemolyticus Peru-466] gi|308093091|gb|EFO42786.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AN-5034] gi|308109580|gb|EFO47120.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ4037] gi|308111201|gb|EFO48741.1| msha biogenesis protein mshl [Vibrio parahaemolyticus K5030] Length = 530 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 23/187 (12%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-GQHLYKTVSSSTG---------A 304 +FE VL+ + + L+ P +TA + Q + G Q+ +SS+ G Sbjct: 321 NFEAVLNFMSTQGDLNVLSSPRITAANNQKSVIKVGTDQYFVTELSSNAGNGENSNAVPE 380 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------DMPSYR--V 353 +T G+ L TP + + G + L + EV+E V +N G +P + + Sbjct: 381 VELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSI 440 Query: 354 RKADTTVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R++D+ + G +V+ GL+K +++Q+ + +P L +P LG LFRN+ ++TE+ I Sbjct: 441 RESDSVIRAKDGDVVVIGGLMKQQNVEQVSK-VPFLGDVPALGHLFRNTSNVTQKTELVI 499 Query: 413 AATPFLV 419 P +V Sbjct: 500 LLKPTVV 506 >gi|77361631|ref|YP_341206.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas haloplanktis TAC125] gi|76876542|emb|CAI87764.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas haloplanktis TAC125] Length = 696 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 3/159 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE +A P +TA + Q A G + Y S+S+GAT+V+ + L T Sbjct: 534 LTALEEENKGEIIASPRITAANQQKARIEQGTEIPY-VESASSGATTVSFKKAVLSLEVT 592 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + ++ L I + + G + ++ +T V + +G T+VL G+ + Sbjct: 593 PHITPDNKVILNLIITQDTRGDTVQTGTGPAVAIDTQQIETQVLVENGQTVVLGGIFQQQ 652 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 I + +PLL IP +G LF+++ E+ E+ I TP Sbjct: 653 IINSTKKVPLLGDIPYIGRLFKSTSEFNEKRELLIFVTP 691 >gi|320106632|ref|YP_004182222.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] gi|319925153|gb|ADV82228.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] Length = 819 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 79/186 (42%), Gaps = 33/186 (17%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTH------DYGVVLHFT 319 R L P L + GQ A G + T S STG SV D GV + T Sbjct: 433 RVLQNPRLRSTDGQRAQLKIGQRIPVATGSYNSGVSTGVASVGVQTQFQYIDIGVQIDLT 492 Query: 320 PTVLSPGRIGLRIQTEVS------------EPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 PTV I L+++ EVS EPVIG R ++ ++L G Sbjct: 493 PTVHQNHEISLKMKIEVSTHANDETISGVVEPVIGQ----------RISEQVIQLKEGEP 542 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRD 426 +L+G+L G P LS+IP+LG +F N +R TEI P +V+ V R Sbjct: 543 SILSGILTKTESDSLGGTPGLSQIPLLGRIFSNKTRDRASTEIVFVLVPHIVRESVLTRM 602 Query: 427 LSRPDD 432 +RP D Sbjct: 603 NTRPID 608 >gi|325576567|ref|ZP_08147285.1| type IV pilus secretin PilQ [Haemophilus parainfluenzae ATCC 33392] gi|325161130|gb|EGC73245.1| type IV pilus secretin PilQ [Haemophilus parainfluenzae ATCC 33392] Length = 460 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 2/177 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y + SV + + L T Sbjct: 276 LTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDTQSVEFREAVLGLEVT 335 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P + ++ S ++ +T V G TIVL G+ D Sbjct: 336 PHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 395 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 I + + +PLL IP + LF ++ E+ I TP ++K +++R + H+ Sbjct: 396 ITKGVDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMARKEKHF 452 >gi|323496092|ref|ZP_08101152.1| MSHA biogenesis protein MshL [Vibrio sinaloensis DSM 21326] gi|323318836|gb|EGA71787.1| MSHA biogenesis protein MshL [Vibrio sinaloensis DSM 21326] Length = 544 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 107/262 (40%), Gaps = 40/262 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF-------- 245 QV L+ I EV Q G S SS+G + S G V +G GD Sbjct: 262 QVILEAKILEVTLSDGYQQGINWSKAFSSNGTNYSIGQ---GSIVKDGNGDILPAVLPGL 318 Query: 246 ---------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V+ SF+ VL + + L+ P +TA + Q A G Y Sbjct: 319 DAIGTLLGGQTNLVISSGSFDAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYV 378 Query: 297 T-VSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGV 343 T +SS G+ +T G+ L TP + G + L + +V E V + Sbjct: 379 TDLSSVVGSGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVDEQVKEI 438 Query: 344 NAGD----MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 GD +P R +R++D+ + G +V+ GL+K + +P L +P LG L Sbjct: 439 GFGDTRITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTIDQVSKVPFLGDVPALGHL 498 Query: 398 FRNSRFNREETEIFIAATPFLV 419 FRN+ ++TE+ I P +V Sbjct: 499 FRNTTKLTQKTELVILLKPTVV 520 >gi|261250571|ref|ZP_05943146.1| type II secretory pathway component EpsD [Vibrio orientalis CIP 102891] gi|260939140|gb|EEX95127.1| type II secretory pathway component EpsD [Vibrio orientalis CIP 102891] Length = 654 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 41/246 (16%) Query: 215 FQHSITGSSSG------------PSKSFAADFGGKFV-----SEGGDFS--------VKG 249 Q+S TG+S G + + D GKF+ +E GD+S V G Sbjct: 355 IQYSNTGASVGQVMVGLEEAKDTTTTTAVYDSDGKFLRNETTTEEGDYSTLASALGSVNG 414 Query: 250 V---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT- 305 + + ++ A+ + L+ P++T + ASF G + + S++G+ Sbjct: 415 AALSIAMGDWTALISAVSTDSNSNILSSPSITVMDNGEASFIVG-EEVPVLTGSTSGSNN 473 Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 +V + G+ L P + + L I+ EVS V+G N + R+ +T+V Sbjct: 474 ENPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSV 532 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G IVL GL+ + + + +P+L IP LG LF+++ E+ + + +K Sbjct: 533 MVEDGQMIVLGGLIDERALESESKVPILGDIPYLGHLFKSTSTQVEKKNLMV-----FIK 587 Query: 421 PVAMRD 426 P +RD Sbjct: 588 PTIIRD 593 >gi|261884996|ref|ZP_06009035.1| type II and III secretion system protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 203 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 17/178 (9%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDY--- 312 VL+ LE + ++ P + ++ +A T G Y+ +T T+V+ Y Sbjct: 4 VLNFLETKGRTKVVSSPKIMTMNNHNALITVGDNINYRVQEDTTNTNTQTAVSNTTYTQY 63 Query: 313 ----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG------VNAGDM-PSYRVRKADTTVE 361 G++L+ P V GRI LRI +S G N ++ P +K T V+ Sbjct: 64 SIFIGILLNLLPEVSDDGRIMLRINPSLSSFKYGDDNRRQANIREIAPDTLQKKLSTVVQ 123 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + SG TI+L GL+ + + +P+L IP+ G LF++++ + TE+ TP ++ Sbjct: 124 VNSGDTIILGGLIGETKGKDNTSVPVLGDIPLFGNLFKSTKDSVSTTELIFIITPKVI 181 >gi|196233070|ref|ZP_03131918.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] gi|196222877|gb|EDY17399.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] Length = 874 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 21/220 (9%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 S ++ AL R + P++ + + A SG Q + S + + TT + G+ Sbjct: 618 SLTAIVTALMNTNRFRVVTRPSVFTRNNKKAIIASG-QEIPVPTSIQSALNAGTTVNTGL 676 Query: 315 V-------------LHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADT 358 V L P + + + L + ++ + V G ++ D+P+ R T Sbjct: 677 VTQSSVQFKRVALQLEVVPLINADREVSLDVLQKIDQ-VSGSTRIDNNDIPNIATRYVKT 735 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP-- 416 +V +P+ GT+VL GL++ + +++ GIPLLS IP LG LF ++ + TE+ I P Sbjct: 736 SVTVPNEGTVVLGGLIQQSMNKVRSGIPLLSSIPGLGYLFSSTTKEKIRTELVILIRPEV 795 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFF-NRVNKIYGPK 455 P A + R + S++ D +A N V K P+ Sbjct: 796 SWAPPEAAQIRERAQEVLSMDPDLEASLSKNGVRKAEAPE 835 >gi|229524610|ref|ZP_04414015.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae bv. albensis VL426] gi|229338191|gb|EEO03208.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae bv. albensis VL426] Length = 571 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + Q A G + Y SSS+GA +V + L T Sbjct: 409 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGAPTVAFKKAVLSLKVT 467 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 468 PQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHS 527 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 528 INNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569 >gi|149911025|ref|ZP_01899654.1| putative MSHA biogenesis protein MshL [Moritella sp. PE36] gi|149805928|gb|EDM65914.1| putative MSHA biogenesis protein MshL [Moritella sp. PE36] Length = 532 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 69/256 (26%), Positives = 105/256 (41%), Gaps = 36/256 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---------AADFGGKFVSEGGDF 245 QV L+V I EV + + G ++ S+ SF A G F G DF Sbjct: 265 QVLLEVKIMEVTLNDGYKQGIDWNVNNSNVAADSSFNFSITDITDLASGAGVFTLAGNDF 324 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA- 304 S + L+ + L+ P +TA++ Q A G + T SST + Sbjct: 325 SA-----------AISLLKTQGDVNVLSSPRVTALNNQKAVIKVGSDEYFVTGYSSTKST 373 Query: 305 ----------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSY 351 +T G+ L TP + S G + L + EV++ V ++P Sbjct: 374 SSDDDSIEQDVELTPFFSGIALDVTPQIDSDGGVLLHVHPSIIEVTDSNKIVAGIELPLA 433 Query: 352 R--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + VR+ DT V+ SG IV+ GL+K + L +P L IP LG LF + ++TE Sbjct: 434 KSDVRETDTVVKAKSGEIIVIGGLMKTANKDLVSKVPFLGDIPWLGELFTYRSQSVQKTE 493 Query: 410 IFIAATPFLVKPVAMR 425 + I P +V R Sbjct: 494 LIILIKPIVVDQNTWR 509 >gi|332532305|ref|ZP_08408185.1| type IV pilus biogenesis protein PilQ [Pseudoalteromonas haloplanktis ANT/505] gi|332038172|gb|EGI74618.1| type IV pilus biogenesis protein PilQ [Pseudoalteromonas haloplanktis ANT/505] Length = 701 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 3/159 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE +A P + A + Q A G + Y T S+S+GAT+V+ + L T Sbjct: 539 LSALEEENKGEIIASPRIIAANQQKARIEQGTEIPY-TESASSGATTVSFKKAVLSLEVT 597 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + ++ L I + + G+ S ++ T V + +G T+VL G+ + Sbjct: 598 PHITPDNKVILDLIITQDTRGDTVQTGTGEAVSIDTQEIQTQVLVENGQTVVLGGIFQQQ 657 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 I +P+L IP +G LF+ + E+ E+ I TP Sbjct: 658 IINTTSKVPILGDIPYVGRLFKTTSEFNEKRELLIFVTP 696 >gi|239994918|ref|ZP_04715442.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Alteromonas macleodii ATCC 27126] Length = 582 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 20/191 (10%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTT 309 + R F+ V++ L+ ++ L+ P +T + Q A G + T VS+S ++ T Sbjct: 372 ISRGDFDGVINMLQTQGDVQMLSNPRVTVTNNQKAVIKVGQDEYFVTDVSTSEDQSATQT 431 Query: 310 HD----------YGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD------MPS 350 + G+ L TP + G + L + TE +E + GD + Sbjct: 432 ENENDIELTPFFSGIALDVTPQIDRSGSVILHVHPSVTETAEQTKVIQVGDQQILLPLAQ 491 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++DT + G +V+ GL++ + + PLL IP +G F+N + + E+ Sbjct: 492 SNIRESDTVIRARDGEIVVIGGLMETVTSEQESKTPLLGDIPFIGNAFKNKAKTQSKREL 551 Query: 411 FIAATPFLVKP 421 I P +V+P Sbjct: 552 VILIRPSVVQP 562 >gi|153840376|ref|ZP_01993043.1| general secretion pathway protein D [Vibrio parahaemolyticus AQ3810] gi|149745960|gb|EDM57090.1| general secretion pathway protein D [Vibrio parahaemolyticus AQ3810] Length = 552 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 101/233 (43%), Gaps = 21/233 (9%) Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 E +D+ K + +S T + D+ + GG + + ++ A+ Sbjct: 270 EEAKDVTKTESYWNSDTNKWENRQYTEEGDYSTLASALGGVNGAAMSIVMGDWTALISAV 329 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YG 313 + L+ P++T + ASF G + V TG+T+ + +D G Sbjct: 330 ASDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVG 384 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L P + + L I+ EVS V+G N + R+ +T+V + G +VL GL Sbjct: 385 IKLKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGL 443 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + + + +PLL IP+LG LF+++ E+ + + +KP +RD Sbjct: 444 VDERALESESKVPLLGDIPVLGHLFKSTSTQTEKRNLMV-----FIKPTIIRD 491 >gi|294012342|ref|YP_003545802.1| type II secretory pathway component PulD [Sphingobium japonicum UT26S] gi|292675672|dbj|BAI97190.1| type II secretory pathway component PulD [Sphingobium japonicum UT26S] Length = 726 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 20/178 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------- 305 F +++A++ T L+ P++ + Q AS G Q V +TG Sbjct: 473 FGAIINAVKSDTDSNILSTPSVMTLDNQKASILVGQQ-----VPVTTGEALSQNFDNQFR 527 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVEL 362 +V D G+ L P + + G I L ++ EVS PV N+ D+ + R+ +TTV + Sbjct: 528 TVQRQDVGIKLEVKPQINTGGAIKLFLKQEVSSVAGPVSNNNS-DLIINK-REIETTVTV 585 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G + L GLL D+ ++ E IPLLS IP LG LF++ +R +T + + P +++ Sbjct: 586 DDGEILALGGLLDDNERKTIERIPLLSDIPGLGELFKSRSKSRTKTNLMVFIRPTILR 643 >gi|152985006|ref|YP_001347404.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] gi|150960164|gb|ABR82189.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] Length = 658 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 111/250 (44%), Gaps = 30/250 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG----------- 243 QV ++ I E+ DI +G Q +I G +++ FG +S G Sbjct: 360 QVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTRT---SFGNTGLSIGTLLQALKDDKIP 416 Query: 244 ----DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQ 292 D +V G+ SF ++ AL + L+ P+L + Q A G G Sbjct: 417 NPLPDGAVVGI-GSSSFGALVTALSANSKSNLLSTPSLLTLDNQKAEILVGQNVPFNTGS 475 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMP 349 + + SS T+V D GV L TP + + L I+ E+S V V+ D+ Sbjct: 476 YTTNSEGSSNPFTTVERKDIGVNLKVTPHINDGAALRLEIEQEISSIAPNVQQVSDTDII 535 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + R +T+ +G IVL GL++DD+ Q + +PLL IP LG LFR+++ + Sbjct: 536 TNK-RSIKSTILAENGQVIVLGGLIQDDVVQAESKVPLLGDIPWLGRLFRSTKDTHTKRN 594 Query: 410 IFIAATPFLV 419 + + P +V Sbjct: 595 LMVFLRPTVV 604 >gi|3978475|gb|AAC83352.1| outer membrane secretion protein Q [Pseudomonas alcaligenes] Length = 649 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 8/144 (5%) Query: 282 GQSASFTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 GQ+ F +G Y T +S T++ D GV L TP + + L ++ E+S Sbjct: 459 GQNVPFQTGS---YTTDASGANNPFTTIEREDIGVTLKVTPHINDGATLRLEVEQEISSI 515 Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGG-TIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 P GVNA + +++ +V L G IVL GL++DD+ +PLL IP++G Sbjct: 516 APSAGVNAQAVDLVTNKRSIKSVILADDGQVIVLGGLIQDDVTSTDSKVPLLGDIPLIGR 575 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 LFR+++ + + + P +V+ Sbjct: 576 LFRSTKDTHVKRNLMVFLRPTIVR 599 >gi|237809367|ref|YP_002893807.1| type IV pilus secretin PilQ [Tolumonas auensis DSM 9187] gi|237501628|gb|ACQ94221.1| type IV pilus secretin PilQ [Tolumonas auensis DSM 9187] Length = 702 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 4/178 (2%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE ++ P +T + + A G + Y S+S+GA Sbjct: 522 FQVAKLADGSLLDLELSALENENKAEIISSPRVTTANQKEALIEQGYEIPYNE-SASSGA 580 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 T+++ + L TP + + L + Q ++ + V N G + + T V Sbjct: 581 TTISFKKAVLSLKVTPQITPDNNVILDLHVTQDDIYQDVNTGNGGTAKALSTQAITTQVL 640 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+VL G+ I++ IP+L IP +G LFRN+ + E+ I TP +V Sbjct: 641 VKNGETLVLGGIYNRSIKKTVNKIPVLGDIPGVGVLFRNTVNTNTKKELLIFVTPKIV 698 >gi|294101775|ref|YP_003553633.1| type II and III secretion system protein [Aminobacterium colombiense DSM 12261] gi|293616755|gb|ADE56909.1| type II and III secretion system protein [Aminobacterium colombiense DSM 12261] Length = 556 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 18/226 (7%) Query: 202 IAEVRRDILKQIGFQHSITGSSS--GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 +A I K ++ G+ G S S++ G+ ++ S+ G + + + + Sbjct: 337 VASCLESIYKHWMLEYKGRGTPGRIGYSDSYSEGMFGEDIT-----SLSGTVKKL--DAL 389 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + LE+ LAEP++ I G A ++ Y + G + + + G L T Sbjct: 390 ISTLEKEEKGHILAEPSVITIEGTKARIQLVQKYPYVSTRDEAGNPTYVSEEVGPQLEIT 449 Query: 320 PTVLSPGR-----IGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 P V GR I L I+T EV G P R+ +T V + G V+ GL Sbjct: 450 PFV---GRDEIITIKLVIKTGEVVSWREGARGETYPETSTRQVETQVRVRDGEPFVIGGL 506 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 K+ + + PLL IPILG+LF +E+ E+ I P ++ Sbjct: 507 FKELKRGNQYKFPLLGDIPILGSLFSTQYTEKEKNEVIIIVIPHIL 552 >gi|269118877|ref|YP_003307054.1| type II and III secretion system protein [Sebaldella termitidis ATCC 33386] gi|268612755|gb|ACZ07123.1| type II and III secretion system protein [Sebaldella termitidis ATCC 33386] Length = 368 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 111/233 (47%), Gaps = 27/233 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ +K TI + ++ +++G S ++ A+DF F+ G+ S+ G+L Sbjct: 139 QIQIKATIIDTSDNLFERLGVDFSAGKNNDNK----ASDFLSSFID--GNLSLSGLLKTG 192 Query: 255 -SFETV-LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +F + + AL+ I+ A P L + G + G + + V +++ +Y Sbjct: 193 GNFLGINIDALKENGDIKIEAMPVLLILEG-----SEGELRVTEEVIVGEKKSTIKDTEY 247 Query: 313 --------GVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTV 360 GVV P + G I L I +E+S + N D + + K ++ V Sbjct: 248 IEPVFAEAGVVFKIKPEIRGFGDSQEIILYIDSEISNFKLSSNFNADQGAKQKNKINSIV 307 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEG-IPLLSKIPILGALFRNSRFNREETEIFI 412 +G ++ + GL K ++Q+ E +P+LSKIPILG+LFR R N+E +I+I Sbjct: 308 SFKNGTSVFIGGL-KQNVQKDSEKRVPVLSKIPILGSLFRYKRKNKEIRDIYI 359 >gi|254228550|ref|ZP_04921975.1| general secretion pathway protein D [Vibrio sp. Ex25] gi|262392666|ref|YP_003284520.1| general secretion pathway protein D/type II secretion outermembrane pore forming protein (PulD) [Vibrio sp. Ex25] gi|151938932|gb|EDN57765.1| general secretion pathway protein D [Vibrio sp. Ex25] gi|262336260|gb|ACY50055.1| general secretion pathway protein D/type II secretion outermembrane pore forming protein (PulD) [Vibrio sp. Ex25] Length = 672 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPT 321 L+ P++T + ASF G + V TG+T+ + +D G+ L P Sbjct: 458 LSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQ 512 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + + Sbjct: 513 INEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALES 571 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + +PLL IP+LG LF+++ E+ + + +KP +RD Sbjct: 572 ESKVPLLGDIPVLGHLFKSTSTQTEKRNLMV-----FIKPTIIRD 611 >gi|269792653|ref|YP_003317557.1| type II and III secretion system protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100288|gb|ACZ19275.1| type II and III secretion system protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 589 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 3/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + ALE A +TLA P++ + G+ A + Y + G + + G + F Sbjct: 411 IKALENADKGKTLASPSVVVVDGKEAKISLTENIKYISARDQAGNPTYSEEKVGPTMEFL 470 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 PTV G + +++ + E + G ++P R+ + V + G V+ GL +D Sbjct: 471 PTVGRDGFVTIKMTLKTGEVTKYIKGGLGEEVPQTSTREVTSYVRVRDGEPFVVGGLFRD 530 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + IP+LS IP++G LF++ +E E+ + P ++ Sbjct: 531 SNTFSEYRIPVLSDIPLIGELFKSRTKKKERGEVAMIVIPHIL 573 >gi|207725091|ref|YP_002255488.1| gspd-related protein [Ralstonia solanacearum MolK2] gi|206590321|emb|CAQ37282.1| gspd-related protein [Ralstonia solanacearum MolK2] Length = 754 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 26/249 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-- 250 E +V L+V I EV+R L+ +G Q PS+ S GG ++ + Sbjct: 329 EPEVMLEVEILEVKRSRLQDLGIQL--------PSQLSLTPLAS---SSGGTLTLDDLRH 377 Query: 251 LDRFSFETVLHALE-----RATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG- 303 L+ + L T LA P + + + A G + T S++TG Sbjct: 378 LNPTRIGATVSPLNVNVNAAVTDTNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGF 437 Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV--RKADT 358 A +V D G+ L PTV + +RI EVS+ + + +G + +Y + R A T Sbjct: 438 VAENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSI-AYEIGTRNATT 496 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + L G +LAGL++D+ + +P L IP LG LF N+ ++EI ++ TP + Sbjct: 497 LLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRV 556 Query: 419 VKPVAMRDL 427 ++P +L Sbjct: 557 IRPAQRPNL 565 >gi|27364325|ref|NP_759853.1| general secretion pathway protein D [Vibrio vulnificus CMCP6] gi|320157717|ref|YP_004190096.1| general secretion pathway protein D [Vibrio vulnificus MO6-24/O] gi|27360443|gb|AAO09380.1| general secretion pathway protein D [Vibrio vulnificus CMCP6] gi|319933029|gb|ADV87893.1| general secretion pathway protein D [Vibrio vulnificus MO6-24/O] Length = 673 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 21/181 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + ++ A+ + L+ P++T + ASF G + V TG+T+ + +D Sbjct: 443 WTALISAVSSDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 497 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L I+ EVS V+G N + R+ +T+V + G Sbjct: 498 TVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDG 556 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL GL+ + + + +PLL IP+LG LF+++ E+ + + +KP +R Sbjct: 557 QMLVLGGLIDERALESESKVPLLGDIPVLGHLFKSTNTQVEKKNLMV-----FIKPTIIR 611 Query: 426 D 426 D Sbjct: 612 D 612 >gi|157372484|ref|YP_001480473.1| general secretion pathway protein D [Serratia proteamaculans 568] gi|157324248|gb|ABV43345.1| general secretion pathway protein D [Serratia proteamaculans 568] Length = 660 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 20/200 (10%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 ++ +L A+ + LA P++ + + A F+ G T S +T + +V Sbjct: 427 NWAGLLTAISNQSQNNILATPSIMTLDNEDAEFSVGQDVPILTGSQTTNSDNVFNTVARK 486 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L+I+ EVS V N G ++ +R + TV + SG Sbjct: 487 TVGIKLKVKPQINKGQSVLLQIEQEVSSVAENSSVDKDNLG--ATFNIRTVNNTVLVESG 544 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T+V+ GLL K +P L +IP+LGALFR++ + + + P ++ Sbjct: 545 ETVVVGGLLDKSQSDSKSAVPFLERIPLLGALFRSTSHKESKRNLILFIRPTVI------ 598 Query: 426 DLSRPDDHYSVEDDAKAFFF 445 R + Y+ E KA F Sbjct: 599 ---RSTEEYAQESMRKAARF 615 >gi|330954627|gb|EGH54887.1| general secretion pathway protein D [Pseudomonas syringae Cit 7] Length = 356 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALE + L+ P+L ++ Q A G + S+ T +SV Sbjct: 152 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTDTTLSSVE 211 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS N D P R T V SG Sbjct: 212 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNANNNDANGNPRISTRSVATQVAAQSG 271 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF N+ +++ TE+ + TP ++ Sbjct: 272 ETVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVI 325 >gi|91224969|ref|ZP_01260228.1| general secretion pathway protein D precursor [Vibrio alginolyticus 12G01] gi|91190215|gb|EAS76485.1| general secretion pathway protein D precursor [Vibrio alginolyticus 12G01] Length = 672 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 32/209 (15%) Query: 239 VSEGGDFS--------VKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASF 287 V+E GD+S V G + ++ A+ + L+ P++T + ASF Sbjct: 414 VTESGDYSTLASALSGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSITVMDNGEASF 473 Query: 288 TSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPGRIGLRIQTEVS 337 G + V TG+T+ + +D G+ L P + + L I+ EVS Sbjct: 474 IVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVS 528 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 V+G N + R+ +T+V + G +VL GL+ + + + +PLL IP+LG L Sbjct: 529 N-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHL 587 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426 F+++ E+ + + +KP +RD Sbjct: 588 FKSTSTQTEKRNLMV-----FIKPTIIRD 611 >gi|85860506|ref|YP_462708.1| type IV secretion [Syntrophus aciditrophicus SB] gi|85723597|gb|ABC78540.1| type IV secretion [Syntrophus aciditrophicus SB] Length = 590 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 13/187 (6%) Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 K VLD + ALE ++ + ++ P +T + G +A G + Y T G V Sbjct: 411 KAVLD-----VQIAALESTSSGKIISTPKVTTMDGVTAKIKQGEEIPYTTYDDK-GYPRV 464 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPS 364 + + L TP++ GRI ++I G+ ++P + + D+ V + Sbjct: 465 NFKEAVLKLEVTPSITPDGRISMQINATNDRGDYAKAGILGDNVPIIK-NEVDSKVVVED 523 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL---VKP 421 G TIV+ G+ K G+P LS+IP+LG LF++ +R ++ I TP + V+P Sbjct: 524 GTTIVIGGVSKTTDDTSTSGVPWLSRIPVLGWLFKSENTDRTRKQLLIFVTPKIIPDVEP 583 Query: 422 VAMRDLS 428 A LS Sbjct: 584 GAAAGLS 590 >gi|293390985|ref|ZP_06635319.1| protein transport protein HofQ [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951519|gb|EFE01638.1| protein transport protein HofQ [Aggregatibacter actinomycetemcomitans D7S-1] Length = 469 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 27/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +Q+ ++ I + + LK++G + I + A GG G D V + Sbjct: 194 EQIAIEARIVTINDESLKELGVRWGIFNPTEN-----AHRIGGSLAGNGFDNLVNQLNVN 248 Query: 254 FSFETV--------------------LHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F T L ALER + +A P L + +SAS G + Sbjct: 249 FPTTTTPAGSVALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEL 308 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSY 351 Y V+ +G+ SV + + L TP + +I L + + P + G++ S Sbjct: 309 PYILVNEKSGSQSVEFREAVLGLEVTPHISQDKQILLDLIVSQNSPGSRVAYGLGEVVSI 368 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ +T V G TIVL G+ D I + + +P+L IP + LF ++ E+ Sbjct: 369 DKQEINTQVFAKDGETIVLGGVFSDTITKGTDKVPVLGDIPGIKHLFSKESERHQKRELV 428 Query: 412 IAATPFLVK 420 I TP +++ Sbjct: 429 IFVTPHILR 437 >gi|300696689|ref|YP_003747350.1| secretion type II protein related to gspD (secretin) protein [Ralstonia solanacearum CFBP2957] gi|299073413|emb|CBJ52927.1| secretion type II protein related to gspD (secretin) protein [Ralstonia solanacearum CFBP2957] Length = 754 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 26/249 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-- 250 E +V L+V I EV+R L+ +G Q PS+ S GG ++ + Sbjct: 329 EPEVMLEVEILEVKRSRLQDLGIQL--------PSQLSLTPLAS---SSGGTLTLDDLRH 377 Query: 251 LDRFSFETVLHALE-----RATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG- 303 L+ + L T LA P + + + A G + T S++TG Sbjct: 378 LNPTRIGATVSPLNINVNAAVTDTNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGF 437 Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV--RKADT 358 A +V D G+ L PTV + +RI EVS+ + + +G + +Y + R A T Sbjct: 438 VAENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSI-AYEIGTRNATT 496 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + L G +LAGL++D+ + +P L IP LG LF N+ ++EI ++ TP + Sbjct: 497 LLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRV 556 Query: 419 VKPVAMRDL 427 ++P +L Sbjct: 557 IRPAQRPNL 565 >gi|260770770|ref|ZP_05879699.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio furnissii CIP 102972] gi|260614007|gb|EEX39197.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio furnissii CIP 102972] gi|315178810|gb|ADT85724.1| general secretion pathway protein D [Vibrio furnissii NCTC 11218] Length = 675 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 16/175 (9%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + ++ A+ + L+ P++T + ASF G + V TG+TS + +D Sbjct: 445 WTALISAVSSNSNTNILSSPSITVMDNGEASFIVG-----EEVPVITGSTSSSNNDNPFQ 499 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L I+ EVS V+G N + R+ +T+V + G Sbjct: 500 TVDRKEVGIKLKVVPQINEGDSVQLAIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDG 558 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +VL GL+ + + + +PLL IPI+G LF ++ E+ + + P +++ Sbjct: 559 QMLVLGGLIDERTAESESKVPLLGDIPIIGHLFSSTSTQVEKKNLMVFIKPTIIR 613 >gi|94985829|ref|YP_605193.1| type II and III secretion system protein [Deinococcus geothermalis DSM 11300] gi|94556110|gb|ABF46024.1| type IV pilus assembly protein PilQ [Deinococcus geothermalis DSM 11300] Length = 673 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 146/346 (42%), Gaps = 53/346 (15%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVV----LHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 A LE TL R + +N + +++ V +G T+ +T S + + Q Sbjct: 335 ATLEGTLARDLTPANGNAQTLANVPVNATDANGNPITVTVPTTGSSAGQTANSNAQQPQQ 394 Query: 177 ANSSSK-------KVMNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 A +S K N L + G +QVT + ++ QI Q I + ++ Sbjct: 395 AAPNSNGATIIADKRTNTLIVRGTPEQVTQIAELVPQLDQVVPQINVQVRIQEITETAAR 454 Query: 229 SFAAD----FGGKFVSEG-----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + D FGG VS G F L F+ L ALE + + + +T Sbjct: 455 TLGLDWKVNFGGFNVSVGSGGLGATFDPTQSLVGFNIFPTLQALENQGLTKRVYDGNITM 514 Query: 280 ISGQ----SASFT------------SGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPTV 322 SGQ SA+ T SGG L + SS+G DYG+ L F P V Sbjct: 515 QSGQRSLGSATNTQNASANAAASIKSGG-RLEINIPSSSGNIE-KQIDYGLNLDFFDPQV 572 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------RKADTTVELPSGGTIVLAGLL 374 G + LR++ +V+ AG +P+ V +A +T+ SG T++++GLL Sbjct: 573 APDGTVTLRVRGQVNN-----IAGTLPTTSVPNLLNFTNSEAQSTITFKSGQTVLMSGLL 627 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +G+P LS +P++GA F RE++++ + T +VK Sbjct: 628 GTTESRTNDGVPFLSSLPVIGAAFGKQTTRREQSQLLVIITGSVVK 673 >gi|149925604|ref|ZP_01913868.1| type II and III secretion system protein [Limnobacter sp. MED105] gi|149825721|gb|EDM84929.1| type II and III secretion system protein [Limnobacter sp. MED105] Length = 807 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 31/217 (14%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295 G ++ G+ + + ALE L+ P + + + A G GQ Sbjct: 506 GQVNIPGIGTISNLGFLARALESKANANILSTPNILTLDNEEAKIVIGQNVPFITGQF-- 563 Query: 296 KTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 T S GAT ++ D G+ L P V G + L I EVS V N + + Sbjct: 564 -TNSGGNGATVNPFQTIERQDVGLTLRVKPQVSEGGIVKLGIFQEVSSVVDSTNVSGIIT 622 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R ++ V + +G IVL GL++D + +E +P L +P+LG FR R++T + Sbjct: 623 NK-RSIESNVLVETGNIIVLGGLVEDRVTGNEEKVPGLGDVPVLGQFFRYDNRRRQKTNL 681 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++PV +R+ ED A++ NR Sbjct: 682 MV-----FLRPVVVRN----------EDQAQSIVTNR 703 >gi|84394142|ref|ZP_00992875.1| MSHA biogenesis protein MshL [Vibrio splendidus 12B01] gi|84375244|gb|EAP92158.1| MSHA biogenesis protein MshL [Vibrio splendidus 12B01] Length = 492 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 21/186 (11%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA--------- 304 SFE VL ++ + L+ P +TA + Q A G Y T +SSS G+ Sbjct: 283 SFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTDLSSSVGSGDDANVAPE 342 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAG--DMPSYR--V 353 +T G+ L TP + G + L + V E +G G +P + + Sbjct: 343 VELTPFFSGISLDVTPQIDDKGSVFLHVHPAVIEVEEEVKELNLGSTTGIVQLPLAKSSI 402 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R++D+ + G +V+ GL+K + + +P L IP LG LFRN+ ++TE+ I Sbjct: 403 RESDSVIRAKDGDVVVIGGLMKSNTSDVTSKVPFLGDIPALGHLFRNTNQLTQKTELVIL 462 Query: 414 ATPFLV 419 P +V Sbjct: 463 LKPTIV 468 >gi|95931255|ref|ZP_01313974.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] gi|95132691|gb|EAT14371.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] Length = 665 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 18/187 (9%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGA------TS 306 +F ++ + T + L+ P L + A G + ++ STG+ S Sbjct: 457 AFSALIKLSKDDTNVNILSAPRLLTSDNEEAEIVVGRNVPIITSRLTDSTGSDSLAQSVS 516 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVEL 362 V D + L FTP + + L + E ++ V GD+ P++ RK TV Sbjct: 517 VERKDVALTLRFTPQITEGELVRLNVYQETTDLTDSV--GDVNSVGPTFTTRKISNTVLA 574 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE-ETEIFIAATPFLVKP 421 G T+VL GL+ + Q+ +PLL IP+LG LF+ S+ N+E +T + + TP ++ Sbjct: 575 RDGQTVVLGGLISTNQQETISKVPLLGDIPLLGWLFK-SKDNKEVKTNLLVFITPTIISD 633 Query: 422 VAMRDLS 428 M DLS Sbjct: 634 --MEDLS 638 >gi|261867159|ref|YP_003255081.1| protein transport protein HofQ [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412491|gb|ACX81862.1| protein transport protein HofQ [Aggregatibacter actinomycetemcomitans D11S-1] Length = 469 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 27/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +Q+ ++ I + + LK++G + I + A GG G D V + Sbjct: 194 EQIAIEARIVTINDESLKELGVRWGIFSPTDN-----AHRIGGSLAGNGFDNLVNQLNVN 248 Query: 254 FSFETV--------------------LHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F T L ALER + +A P L + +SAS G + Sbjct: 249 FPTTTTPAGSVALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEL 308 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSY 351 Y V+ +G+ SV + + L TP + +I L + + P + G++ S Sbjct: 309 PYILVNEKSGSQSVEFREAVLGLEVTPHISQDKQILLDLIVSQNSPGSRVAYGLGEVVSI 368 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ +T V G TIVL G+ D I + + +P+L IP + LF ++ E+ Sbjct: 369 DKQEINTQVFAKDGETIVLGGVFSDTITKGTDKVPVLGDIPGIKHLFSKESERHQKRELV 428 Query: 412 IAATPFLVK 420 I TP +++ Sbjct: 429 IFVTPHILR 437 >gi|254490277|ref|ZP_05103466.1| type IV pilus secretin PilQ subfamily, putative [Methylophaga thiooxidans DMS010] gi|224464410|gb|EEF80670.1| type IV pilus secretin PilQ subfamily, putative [Methylophaga thiooxydans DMS010] Length = 672 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 9/168 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 E L A++ ++ P + + Q A+ G + Y+ +SS GAT+V+ + + Sbjct: 506 LELELSAMQAEGKGEVISSPRVITSNQQQATIEQGTEIPYQEATSS-GATNVSFKEAVLK 564 Query: 316 LHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L TP + RI + ++ EV E +GV PS R T V + +G T+VL G Sbjct: 565 LDVTPQITPDDRIVMDLEVSKDEVGEVFLGV-----PSIDTRSVKTQVLVDNGETVVLGG 619 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + E +P +P +G LF+N+ + E+ + TP +VK Sbjct: 620 IYEQSTNDNVERVPFFGDLPYVGFLFKNTFKEDRKRELLVFVTPKIVK 667 >gi|66046370|ref|YP_236211.1| type II and III secretion system protein:NolW-like [Pseudomonas syringae pv. syringae B728a] gi|63257077|gb|AAY38173.1| type II and III secretion system protein:NolW-like [Pseudomonas syringae pv. syringae B728a] Length = 776 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 8/173 (4%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALE + L+ P+L ++ Q A G + ++ T +SV Sbjct: 573 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNTGTTLSSVE 632 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGG 366 GV+L P + G + + IQ +VS+ +A P R T V SG Sbjct: 633 YVQTGVILDVVPRINPGGLVYMDIQQQVSDADSSGTTDANGNPRISTRSVATQVAAQSGQ 692 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF N+ +++ TE+ + TP ++ Sbjct: 693 TVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVI 745 >gi|301169135|emb|CBW28732.1| predicted fimbrial transporter [Haemophilus influenzae 10810] Length = 445 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IPI+ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPIIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|269964603|ref|ZP_06178842.1| General secretion pathway protein D [Vibrio alginolyticus 40B] gi|269830730|gb|EEZ84950.1| General secretion pathway protein D [Vibrio alginolyticus 40B] Length = 286 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 21/181 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + ++ A+ + L+ P++T + ASF G + V TG+T+ + +D Sbjct: 56 WTALISAVASDSNSNILSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQ 110 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L I+ EVS V+G N + R+ +T+V + G Sbjct: 111 TVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDG 169 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +VL GL+ + + + +PLL IP+LG LF+++ E+ + + +KP +R Sbjct: 170 QMLVLGGLVDERALESESKVPLLGDIPVLGHLFKSTSTQTEKRNLMV-----FIKPTIIR 224 Query: 426 D 426 D Sbjct: 225 D 225 >gi|332702049|ref|ZP_08422137.1| type II and III secretion system protein [Desulfovibrio africanus str. Walvis Bay] gi|332552198|gb|EGJ49242.1| type II and III secretion system protein [Desulfovibrio africanus str. Walvis Bay] Length = 524 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 64/279 (22%), Positives = 112/279 (40%), Gaps = 35/279 (12%) Query: 175 QYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 Q A S++++ L+ + Q+ LK I E +D + +G Q +SG + A Sbjct: 226 QAAPEESRRILRLVEQLDKPRAQILLKAHIVETTKDTARDLGVQWGGVYQTSGSGNNLFA 285 Query: 233 DFGG--------KFVSEG----------------GDFSVKGVLDRFSF--------ETVL 260 GG K+V + D + G F E L Sbjct: 286 IPGGTNGRLEDNKWVYDSTLGTGIGGQGFGVNLPADLAAGGTQLGLMFGKLGGSILELQL 345 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 AL+ + L+ P+++ + Q A FT G+ + + G +V D + L TP Sbjct: 346 SALQENGRVNILSSPSISTLDNQMA-FTENGERVPYVATDEEGDLNVKFEDAVLRLEITP 404 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 V+ ++ L+I E P ++ +T + + G T+V++GL +D Sbjct: 405 HVIDREQLKLKILVRKDEVDTSRTVQGNPFIIKKRTETVLVVDDGETVVISGLSRDFDSS 464 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P L IP+LG LF+ + E E+ I TP ++ Sbjct: 465 RDQKVPWLGDIPLLGRLFQRNVDKAEMEEVLIFITPHVL 503 >gi|293416407|ref|ZP_06659046.1| general secretion pathway protein D [Escherichia coli B185] gi|291431763|gb|EFF04746.1| general secretion pathway protein D [Escherichia coli B185] Length = 686 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ GA +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGANNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGHLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|319775638|ref|YP_004138126.1| competence protein E [Haemophilus influenzae F3047] gi|317450229|emb|CBY86445.1| competence protein E [Haemophilus influenzae F3047] Length = 445 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|261253997|ref|ZP_05946570.1| MSHA biogenesis protein MshL [Vibrio orientalis CIP 102891] gi|260937388|gb|EEX93377.1| MSHA biogenesis protein MshL [Vibrio orientalis CIP 102891] Length = 552 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 19/189 (10%) Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA---- 304 V+ SFE VL + + L+ P +TA + Q A G Y T +SS G+ Sbjct: 340 VISSGSFEAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGSGDNS 399 Query: 305 -----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD----MPSYR 352 +T G+ L TP + G + L + +V E V + G+ +P R Sbjct: 400 EPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVDEQVKEIGYGNTSITLPLAR 459 Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++D+ + G +V+ GL+K + +P L IP LG LFRN+ ++TE+ Sbjct: 460 SSIRESDSVIRAQDGDVVVIGGLMKSNTIDQVSKVPFLGDIPALGHLFRNTTKLTQKTEL 519 Query: 411 FIAATPFLV 419 I P +V Sbjct: 520 VILLKPSVV 528 >gi|73542913|ref|YP_297433.1| type II and III secretion system protein:NolW-like [Ralstonia eutropha JMP134] gi|72120326|gb|AAZ62589.1| type II and III secretion system protein:NolW-like [Ralstonia eutropha JMP134] Length = 804 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 11/169 (6%) Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATSVTT------HDYGVVLHF 318 ++ L+ P L + + A G Q++ T S + GA SVT D G+ L Sbjct: 538 SVNLLSTPNLITLENEEAKILIG-QNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRV 596 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + G + ++I E S V G + P+ VR +T V + G IVL GL++D Sbjct: 597 RPQITDGGLVKMQIFQESSSVVPGTLTQVQGPTTNVRSIETNVLVDDGQIIVLGGLIEDS 656 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + +PLL IP +G LFR NR +T + + P++++ D Sbjct: 657 YGDGVQKVPLLGDIPWIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAAD 705 >gi|83749448|ref|ZP_00946440.1| General secretion pathway protein D [Ralstonia solanacearum UW551] gi|207738427|ref|YP_002256820.1| gspd-related protein [Ralstonia solanacearum IPO1609] gi|83723885|gb|EAP71071.1| General secretion pathway protein D [Ralstonia solanacearum UW551] gi|206591793|emb|CAQ58699.1| gspd-related protein [Ralstonia solanacearum IPO1609] Length = 657 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 26/249 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-- 250 E +V L+V I EV+R L+ +G Q PS+ S GG ++ + Sbjct: 329 EPEVMLEVEILEVKRSRLQDLGIQL--------PSQLSLTPLAS---SSGGTLTLDDLRH 377 Query: 251 LDRFSFETVLHALE-----RATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG- 303 L+ + L T LA P + + + A G + T S++TG Sbjct: 378 LNPTRIGATVSPLNVNVNAAVTDTNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGF 437 Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRV--RKADT 358 A +V D G+ L PTV + +RI EVS+ + + +G + +Y + R A T Sbjct: 438 VAENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSI-AYEIGTRNATT 496 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + L G +LAGL++D+ + +P L IP LG LF N+ ++EI ++ TP + Sbjct: 497 LLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRV 556 Query: 419 VKPVAMRDL 427 ++P +L Sbjct: 557 IRPAQRPNL 565 >gi|149925492|ref|ZP_01913756.1| Type II secretory pathway component PulD-like protein [Limnobacter sp. MED105] gi|149825609|gb|EDM84817.1| Type II secretory pathway component PulD-like protein [Limnobacter sp. MED105] Length = 633 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 8/152 (5%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSST-GATSVTTHD--YGVVLHFTPTVLSPGRI 328 LA PTL AI G + F SG VS+S G T+V + G+ L TP L GRI Sbjct: 400 LARPTLAAIEGLPSEFFSGTNLSAGFVSTSVQGGTTVVPLEKRIGIKLAVTPVFLPQGRI 459 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTT----VELPSGGTIVLAGLLKDDIQQLKEG 384 L+++ + + + +Y++ +TT V + G T+VL+GL + ++G Sbjct: 460 QLKVEAQRTN-LNATTENPRVAYQIEIGETTANANVVMNLGDTLVLSGLSEKSSASNRDG 518 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +P L +P L LF N R N + + I TP Sbjct: 519 VPGLQDVPGLQYLFSNKRTNDLQRSVLILVTP 550 >gi|254507437|ref|ZP_05119572.1| msha biogenesis protein mshl [Vibrio parahaemolyticus 16] gi|219549693|gb|EED26683.1| msha biogenesis protein mshl [Vibrio parahaemolyticus 16] Length = 527 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 19/189 (10%) Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG----- 303 V+ SF+ VL + + L+ P +TA + Q A G + T +SS G Sbjct: 315 VISSGSFDAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYFVTDLSSVVGNGDNS 374 Query: 304 ----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD----MPSYR 352 +T G+ L TP + G + L + +V+E V + GD +P R Sbjct: 375 EPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVNEQVKEIGFGDSRITLPLAR 434 Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++D+ + G +V+ GL+K + +P+L +P+LG LFRN+ ++TE+ Sbjct: 435 SSIRESDSVIRAQDGDVVVIGGLMKSNTVDQVSKVPVLGDVPVLGHLFRNTSKLTQKTEL 494 Query: 411 FIAATPFLV 419 I P +V Sbjct: 495 VILLKPTVV 503 >gi|329122312|ref|ZP_08250900.1| competence protein E [Haemophilus aegyptius ATCC 11116] gi|327473873|gb|EGF19290.1| competence protein E [Haemophilus aegyptius ATCC 11116] Length = 445 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G + K + T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEGVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|325280193|ref|YP_004252735.1| type II and III secretion system protein [Odoribacter splanchnicus DSM 20712] gi|324312002|gb|ADY32555.1| type II and III secretion system protein [Odoribacter splanchnicus DSM 20712] Length = 628 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDY 312 +F L ALE A + + P L+ ++G AS SG YK V ++ T + + Y Sbjct: 454 NFYLTLKALEEAGTLELRSTPKLSTLNGHEASLKSGETRYYKEVQNNIMGTQNPIQSESY 513 Query: 313 -------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 + L P V S G+I L I+ E SE P R + + + + Sbjct: 514 TWKSTEADLSLKIVPYVSSDGKITLTIEIEQSEFTAREEKDAPPGTATRSFKSRIRVDNE 573 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR--EETEIFIAAT 415 ++L G+ ++ ++ G+PL+++IP+L LF S N+ E+ IFI T Sbjct: 574 DMVLLGGIDRNTREKGSSGLPLIARIPVLKWLFGVSTDNKVDEKLSIFIKPT 625 >gi|300721146|ref|YP_003710414.1| putative transport protein [Xenorhabdus nematophila ATCC 19061] gi|297627631|emb|CBJ88152.1| putative transport protein, possibly in biosynthesis of type IV pilin (fragment) [Xenorhabdus nematophila ATCC 19061] Length = 325 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 4/165 (2%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 E L ALE+ + +A P LTA AS G + Y V T++ + + Sbjct: 160 LEMELSALEQENQLDIIASPRLTASHQHPASIKQGSEIPY--VVQDKDKTTIQFKEAVLG 217 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGL 373 + TP +L G+I L ++ + P V+ G + + K + T V + +G T++L G+ Sbjct: 218 MEVTPHILREGKIRLALKISQNAPGFPVSQGGNENLAIDKQEIMTQVTVRNGETLILGGI 277 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + ++ +P LS IP+LG LF + E+ I TP L Sbjct: 278 FQQKKVASQQKVPYLSDIPLLGTLFNQNGEQHSRRELVIFITPQL 322 >gi|68249035|ref|YP_248147.1| competence protein E [Haemophilus influenzae 86-028NP] gi|148825285|ref|YP_001290038.1| competence protein E [Haemophilus influenzae PittEE] gi|59939227|gb|AAX12385.1| ComE [Haemophilus influenzae] gi|68057234|gb|AAX87487.1| competence protein E [Haemophilus influenzae 86-028NP] gi|148715445|gb|ABQ97655.1| competence protein E [Haemophilus influenzae PittEE] Length = 445 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|148263986|ref|YP_001230692.1| type II and III secretion system protein [Geobacter uraniireducens Rf4] gi|146397486|gb|ABQ26119.1| type II and III secretion system protein [Geobacter uraniireducens Rf4] Length = 796 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 9/164 (5%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPG 326 TLA P + + + A F G + T SS TG + +V D GV L+ PT+ Sbjct: 422 ETLANPKIRVKNREKAKFNVGQRVPITTTSSPTGGGVSVNVQYVDVGVKLNAEPTIQLNN 481 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRV------RKADTTVELPSGGTIVLAGLLKDDIQQ 380 + +++ EVS + G S R DT + L G T ++ GL++D + Sbjct: 482 EVSIKLSLEVSSILSKEKVGSTDSLTTVVTIGTRNLDTVLSLKDGETSIIGGLMQDLKSK 541 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 K+ I LL IP++G L + ++E+ +A TP +V+ + + Sbjct: 542 NKQKIVLLGDIPLIGPLLSQNDDTNNKSELVLAITPRIVRSITI 585 >gi|257454916|ref|ZP_05620164.1| fimbrial assembly protein PilQ [Enhydrobacter aerosaccus SK60] gi|257447626|gb|EEV22621.1| fimbrial assembly protein PilQ [Enhydrobacter aerosaccus SK60] Length = 776 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 4/149 (2%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 ++ P + Q+A SG Q Y+ S+S GATS + + + L TP + GRIG+ Sbjct: 626 ISSPKVLTADKQTARIMSGTQIPYQEASAS-GATSTSFVEAALSLEVTPNITPEGRIGMD 684 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + E P I VN S K + V+ G T+VL G+ K+ + IP L + Sbjct: 685 LSIENGSPTI-VNGATAISKDSIKTNVVVD--DGQTVVLGGVFKNTLGNDVTKIPFLGDL 741 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P + F+ + + + E+ I TP LV Sbjct: 742 PYVDRFFKRTSKSNNKQELLIFVTPKLVN 770 >gi|220932103|ref|YP_002509011.1| type II and III secretion system protein [Halothermothrix orenii H 168] gi|219993413|gb|ACL70016.1| type II and III secretion system protein [Halothermothrix orenii H 168] Length = 385 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 20/240 (8%) Query: 182 KKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 +K++NL+ + Q+ + V ++EV LK++G PS + D G V Sbjct: 158 EKIINLIKRIDKPRKQIKITVVVSEVSTKELKKLGTGFLEYREKDNPSLNLKYD-GSSLV 216 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS-FTSGGQHLYKTV 298 G F + T L L+ + A+P++ + G+ A F Q L+ + Sbjct: 217 LNGNIFE--------NLLTRLEILQEEEKAKIHADPSIVVMDGEPAELFIGEKQTLF--I 266 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK--A 356 + G+ L TP ++S + L +S V +P VR+ Sbjct: 267 TEDEEIEYFKDIKVGISLKVTPRLISKDEMILDFSPSISHFV----NSKLPEIAVRENTL 322 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DTTV + SG T V+AG+ D K+ +P L+KIP+L LF + + E+ I TP Sbjct: 323 DTTVRVASGQTAVIAGMTLQDDYNYKKSVPGLNKIPLLRWLFTKKVNDTGDRELLIFVTP 382 >gi|308094808|ref|ZP_05891872.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AN-5034] gi|308093421|gb|EFO43116.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AN-5034] Length = 628 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 16/233 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248 + ++ + ++I ++ + L+Q+G G S G ++ D V+ G S K Sbjct: 296 QSRIEVALSIVDISANDLRQLGVDWR-AGVSVGNNRIVDIKTTGDVDNGDVTLGSGQSFK 354 Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +LD + +L LE + + ++ PTL A + K V T A Sbjct: 355 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 414 Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T YG +L P ++ + I L + E + D+PS R + T Sbjct: 415 EEVT--YGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDLPSVRKTEISTLA 472 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412 + G ++++ G+ +D++ +PLL IP LGALFR N+ R +FI Sbjct: 473 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFI 525 >gi|291614284|ref|YP_003524441.1| type II and III secretion system protein [Sideroxydans lithotrophicus ES-1] gi|291584396|gb|ADE12054.1| type II and III secretion system protein [Sideroxydans lithotrophicus ES-1] Length = 851 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 11/131 (8%) Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRV--RKADTTV 360 SV D G+ L P + G + ++ EVS V +G + +Y++ R +T + Sbjct: 463 SVQYLDVGLKLEVEPDIHMDGEVAIKTYLEVSTIANQVTNAASGSV-AYQIGTRNVNTVL 521 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G T VLAGL+ D+ ++ +P L +PILG LF ++ ++ +TEI ++ TP ++ Sbjct: 522 RLKDGETQVLAGLINDEDRKSSASVPGLGDLPILGHLFSSNGDDKRKTEIILSITPHII- 580 Query: 421 PVAMRDLSRPD 431 R++ RPD Sbjct: 581 ----RNIHRPD 587 >gi|254228227|ref|ZP_04921656.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio sp. Ex25] gi|151939300|gb|EDN58129.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio sp. Ex25] Length = 624 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 16/233 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248 + ++ + ++I ++ + L Q+G G S G ++ D V+ G + K Sbjct: 292 QSRIEVALSIVDISANDLSQLGVDWR-AGVSVGNNRIVDIKTTGDVSSGDVTLGSGQNFK 350 Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +LD + +L LE + + ++ PTL A + K V T A Sbjct: 351 SLLDSTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 410 Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T YG +L P ++ + +I L + E + D+PS R + T Sbjct: 411 EEVT--YGTLLRIVPRIVGDRFAARPKINLSLHLEDGAKITDGGVDDLPSVRKTEISTLA 468 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412 + G ++++ G+ +D++ +PLL IP LGALFR N+ R +FI Sbjct: 469 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTKRRTVRMFI 521 >gi|319898044|ref|YP_004136241.1| competence protein e [Haemophilus influenzae F3031] gi|317433550|emb|CBY81934.1| competence protein E [Haemophilus influenzae F3031] Length = 445 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|148997|gb|AAA25012.1| A mini-Tn10kan insertion in ORF E causes a deficiency in transformation. ORF E is 24% identical to the products of the filamentous phage gene IV and of pulD, a gene in the pulC operon of Klebsiella; ORF; putative [Haemophilus influenzae] Length = 441 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|290473150|ref|YP_003466011.1| putative transporter [Xenorhabdus bovienii SS-2004] gi|289172444|emb|CBJ79211.1| putative transport protein, possibly in biosynthesis of type IV pilin (fragment) [Xenorhabdus bovienii SS-2004] Length = 361 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 8/168 (4%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 E L ALE+ + +A P LTA Q AS G Y + T++ + + Sbjct: 196 LEMELSALEQENQLDIIASPRLTASHQQPASIKQGSDIPY--LVQDKDKTTIQFKEAVLG 253 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGL 373 + TP +L G+I L ++ + P + ++ G + + K + T V + +G T++L G+ Sbjct: 254 MEVTPHILRKGKIRLALKISQNAPGLPISQGGNENLAIDKQEIVTQVTVRNGETLILGGI 313 Query: 374 LKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLV 419 + + +P LS +P+LGALF + + +R E IFI TP L Sbjct: 314 FQQKKGASLQKVPYLSDLPLLGALFNQKGEQHSRRELVIFI--TPQLT 359 >gi|239618224|ref|YP_002941546.1| type II and III secretion system protein [Kosmotoga olearia TBF 19.5.1] gi|239507055|gb|ACR80542.1| type II and III secretion system protein [Kosmotoga olearia TBF 19.5.1] Length = 2628 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 18/188 (9%) Query: 250 VLDRFSFETVLHALERATAIRT------------LAEPTLTAISGQSASFTSGGQH--LY 295 +LD F +L L +A T ++ P++ A+SG+ A G L Sbjct: 2443 ILDSVDFAKLLKNLITGSATITAQLEKSNVDGSIISNPSIVALSGEEARIHIGDTIPILL 2502 Query: 296 KTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 K + +TG + + GV + TPTV G I L + +VSEP A D+ + Sbjct: 2503 KKIDPATGNIVEELQYLETGVEMTITPTVKDDGTILLDLYIKVSEP--QPYANDLYGEKT 2560 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+A T + + G T+ + GL+ + +P +P +G LFR + +E+ E+ I Sbjct: 2561 REAKTKLVISDGNTLTIGGLVSERENVSVTKLPFFGDLPFIGKLFRAEKTTKEQREMVIF 2620 Query: 414 ATPFLVKP 421 T +V P Sbjct: 2621 ITAKVVAP 2628 >gi|153836207|ref|ZP_01988874.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AQ3810] gi|308126333|ref|ZP_05909374.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AQ4037] gi|149750482|gb|EDM61227.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AQ3810] gi|308110700|gb|EFO48240.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AQ4037] Length = 624 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 16/233 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248 + ++ + ++I ++ + L+Q+G G S G ++ D V+ G S K Sbjct: 292 QSRIEVALSIVDISANDLRQLGVDWR-AGVSVGNNRIIDIKTTGDVDNGDVTLGSGQSFK 350 Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +LD + +L LE + + ++ PTL A + K V T A Sbjct: 351 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 410 Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T YG +L P ++ + I L + E + D+PS R + T Sbjct: 411 EEVT--YGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDLPSVRKTEISTLA 468 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412 + G ++++ G+ +D++ +PLL IP LGALFR N+ R +FI Sbjct: 469 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFI 521 >gi|28898470|ref|NP_798075.1| putative type III secretion protein YscC [Vibrio parahaemolyticus RIMD 2210633] gi|28806688|dbj|BAC59959.1| putative type III secretion protein YscC [Vibrio parahaemolyticus RIMD 2210633] Length = 632 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 16/233 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248 + ++ + ++I ++ + L+Q+G G S G ++ D V+ G S K Sbjct: 300 QSRIEVALSIVDISANDLRQLGVDWR-AGVSVGNNRIVDIKTTGDVDNGDVTLGSGQSFK 358 Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +LD + +L LE + + ++ PTL A + K V T A Sbjct: 359 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 418 Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T YG +L P ++ + I L + E + D+PS R + T Sbjct: 419 EEVT--YGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDLPSVRKTEISTLA 476 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412 + G ++++ G+ +D++ +PLL IP LGALFR N+ R +FI Sbjct: 477 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFI 529 >gi|296389736|ref|ZP_06879211.1| secretion protein XqhA [Pseudomonas aeruginosa PAb1] Length = 776 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 26/252 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242 Q+ ++ I E+ +I +G Q ++ FA D G GK +E Sbjct: 352 QLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFA-DSGLSIGTLLGALQAGKPPAEL 410 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D ++ G+ R F ++ AL R + L+ P+L + Q A G ++T S +T Sbjct: 411 PDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 469 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351 A T+V D GV L TP + + L I+ E+S + A D+ + Sbjct: 470 SASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVTN 529 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R +TV G IVL GL++DD+ + +PLL IP +G LFR+SR R + + Sbjct: 530 K-RSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588 Query: 412 IAATPFLVKPVA 423 + P +V+ A Sbjct: 589 VFLRPSIVRDAA 600 >gi|260582299|ref|ZP_05850092.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae NT127] gi|260094667|gb|EEW78562.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae NT127] Length = 447 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|89075207|ref|ZP_01161638.1| putative fimbrial assembly protein [Photobacterium sp. SKA34] gi|89049029|gb|EAR54596.1| putative fimbrial assembly protein [Photobacterium sp. SKA34] Length = 568 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 7/164 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ ++ P L + ++A G + Y SSS GATSV+ + L T Sbjct: 406 LSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVT 464 Query: 320 PTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P + ++ L + EV++ G G S ++ T V + +G T+VL G+ + Sbjct: 465 PQITPDDKLVLDL--EVTQDNKGEDVPTGTGTAISIDTQRIGTQVLVNNGETVVLGGIYQ 522 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +PLL IPILGALFR+ + E+ I TP +V Sbjct: 523 HSMTHVTRKVPLLGDIPILGALFRHKMEQMGKRELLIFVTPKIV 566 >gi|83591449|ref|YP_425201.1| type II and III secretion system protein [Rhodospirillum rubrum ATCC 11170] gi|83574363|gb|ABC20914.1| type II and III secretion system protein [Rhodospirillum rubrum ATCC 11170] Length = 547 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 24/168 (14%) Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLY----------KTVSSSTGATSVTTHDYGVVLH 317 A+RTL+ P LT ++ Q+A +Y V+ +T ++ + T G+V+ Sbjct: 349 AVRTLSSPRLTVMNNQTAVLKVAENEVYFVVDVDTVTSDGVTQTTYSSEINTVPIGLVMT 408 Query: 318 FTPTVLSPG--RIGL-------RIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPS 364 P+V PG R+ L RI V++P + + +P VR+ D+ V + + Sbjct: 409 VQPSV-EPGGGRVTLGLRPTISRIADRVADPAVSLQNLSVQSLIPVVEVRELDSVVTIDN 467 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 G +V+ GL+++ + + +EG+P L +P++G FR+ + + E+ + Sbjct: 468 GAVVVMGGLMQERMGRDEEGVPGLGDVPLIGRAFRHDSADTDVVELVV 515 >gi|323153824|gb|EFZ40066.1| hypothetical protein ECEPECA14_4273 [Escherichia coli EPECa14] Length = 436 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 41/248 (16%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 Q+ + V+I +V + L+Q+G S T GS + S + A+ +S +F ++ Sbjct: 199 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGSIAFNSSTAQANLSSSVISNANNFMIR- 257 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307 ++AL++ + + L++P++ ++ A Y VS A+ S+ Sbjct: 258 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 306 Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGDMPSY--RV 353 T+ G +L TP +L R+ L IQ + ++ NA D S V Sbjct: 307 TS---GTLLRVTPRILDDNSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSILPEV 362 Query: 354 RKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE-TEI 410 + ++ T E L +G +++L G ++D K+GIPLLS IP++G LF ++ + + Sbjct: 363 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGNLFSSTTKQKHSVVRL 422 Query: 411 F-IAATPF 417 F I ATP Sbjct: 423 FLIKATPI 430 >gi|116049822|ref|YP_791371.1| secretion protein XqhA [Pseudomonas aeruginosa UCBPP-PA14] gi|115585043|gb|ABJ11058.1| secretion protein XqhA [Pseudomonas aeruginosa UCBPP-PA14] Length = 776 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 26/252 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242 Q+ ++ I E+ +I +G Q ++ FA D G GK +E Sbjct: 352 QLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFA-DSGLSIGTLLGALQAGKPPAEL 410 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D ++ G+ R F ++ AL R + L+ P+L + Q A G ++T S +T Sbjct: 411 PDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 469 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351 A T+V D GV L TP + + L I+ E+S + A D+ + Sbjct: 470 SASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVTN 529 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R +TV G IVL GL++DD+ + +PLL IP +G LFR+SR R + + Sbjct: 530 K-RSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588 Query: 412 IAATPFLVKPVA 423 + P +V+ A Sbjct: 589 VFLRPSIVRDAA 600 >gi|313110575|ref|ZP_07796459.1| secretion protein XqhA [Pseudomonas aeruginosa 39016] gi|310882961|gb|EFQ41555.1| secretion protein XqhA [Pseudomonas aeruginosa 39016] Length = 776 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 26/252 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242 Q+ ++ I E+ +I +G Q ++ FA D G GK +E Sbjct: 352 QLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFA-DSGLSIGTLLGALQAGKPPAEL 410 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D ++ G+ R F ++ AL R + L+ P+L + Q A G ++T S +T Sbjct: 411 PDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 469 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351 A T+V D GV L TP + + L I+ E+S + A D+ + Sbjct: 470 SASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVTN 529 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R +TV G IVL GL++DD+ + +PLL IP +G LFR+SR R + + Sbjct: 530 K-RSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588 Query: 412 IAATPFLVKPVA 423 + P +V+ A Sbjct: 589 VFLRPSIVRDAA 600 >gi|308125809|ref|ZP_05777658.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus K5030] gi|308111516|gb|EFO49056.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus K5030] Length = 604 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 16/233 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248 + ++ + ++I ++ + L+Q+G G S G ++ D V+ G S K Sbjct: 272 QSRIEVALSIVDISANDLRQLGVDWR-AGVSVGNNRIVDIKTTGDVDNGDVTLGSGQSFK 330 Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +LD + +L LE + + ++ PTL A + K V T A Sbjct: 331 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 390 Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T YG +L P ++ + I L + E + D+PS R + T Sbjct: 391 EEVT--YGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDLPSVRKTEISTLA 448 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412 + G ++++ G+ +D++ +PLL IP LGALFR N+ R +FI Sbjct: 449 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFI 501 >gi|289207464|ref|YP_003459530.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. K90mix] gi|288943095|gb|ADC70794.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. K90mix] Length = 710 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 10/161 (6%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ ++ P + +GQ+AS G + ++ ++S GATS + + T Sbjct: 552 LSALQVEGRGEIISSPRVITANGQTASIKQGEEIPFQEATAS-GATSTQFIEAVLSTEVT 610 Query: 320 PTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P + G + L I+ EP V+GV P R+ +T V + +G T+VL G+ + Sbjct: 611 PQITPNGNVILDIRVTKDEPSQREVLGV-----PGINKREVNTQVFVGNGETVVLGGVYE 665 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 D + E +P IP LG LFRN + E+ I TP Sbjct: 666 IDSRTNLEKVPFFGDIPFLGNLFRNRSTENTKAELLIFVTP 706 >gi|145634568|ref|ZP_01790277.1| competence protein E [Haemophilus influenzae PittAA] gi|229844405|ref|ZP_04464545.1| competence protein E [Haemophilus influenzae 6P18H1] gi|145268113|gb|EDK08108.1| competence protein E [Haemophilus influenzae PittAA] gi|229812654|gb|EEP48343.1| competence protein E [Haemophilus influenzae 6P18H1] Length = 445 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|309972408|gb|ADO95609.1| Outer membrane secretin ComE [Haemophilus influenzae R2846] Length = 445 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|74316782|ref|YP_314522.1| general secretion pathway protein D [Thiobacillus denitrificans ATCC 25259] gi|74056277|gb|AAZ96717.1| general secretion pathway protein D [Thiobacillus denitrificans ATCC 25259] Length = 554 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 72/303 (23%), Positives = 125/303 (41%), Gaps = 55/303 (18%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------------ITG 221 ++ + +A E QV L+ I EVR Q G + +TG Sbjct: 250 ERFLKATALAVERQVMLEAKIIEVRLSDGFQTGINWAALHEGRHKYSSGADAGNFNLVTG 309 Query: 222 SSSGPSKS-FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 ++SG S + + GG F + SF +++ LE A+ L+ P + A+ Sbjct: 310 AASGSLGSVLGSGLPAASGTSGGIFGL--AFQTKSFAALINFLETQGAVHVLSSPRIAAL 367 Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDY--GVVLHFTPTVLSPGRIG 329 + Q A G + T S+T T SVT + G+ L TP + GRI Sbjct: 368 NNQKAVLKVGTDDFFVTNVSTTSNTGGAGTTTTPSVTLQPFFSGIALDVTPQIDERGRIT 427 Query: 330 LRIQTEVS---EPVIGVNAG-------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 L ++ VS E + ++AG + S V + D+ V++ G + + G++K Sbjct: 428 LHVRPSVSVVTEKIKNIDAGAAGSLTLPLASSAVSETDSVVQVEDGRIVAIGGMMKQSFD 487 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 +P + ++P+LG F N+ + ++E+ I L+KP + D + D Sbjct: 488 DSANRVPAIGRVPLLGYFFGNTARSASKSELVI-----LIKPTVI------DSQEDWQAD 536 Query: 440 AKA 442 A+A Sbjct: 537 AEA 539 >gi|288818586|ref|YP_003432934.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] gi|288787986|dbj|BAI69733.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] gi|308752177|gb|ADO45660.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] Length = 665 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 12/197 (6%) Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTHDY---GVVLHFT 319 E + ++ P + + Q+A G Y + V V T+DY G+ L T Sbjct: 464 ESGSGFNIVSNPKVLTLDNQTAEIKVGQVVPYASGVKFDINGMPVITYDYKEVGLDLGVT 523 Query: 320 PTVLSPG---RIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 PT+ +I L++Q V P IG + +P R+ ++ V + +G TI++ GL+ Sbjct: 524 PTISGKDLRLQINLKLQDIVDYIRPQIGTLSYAVPVTSNRQVNSDVVVENGQTIIIGGLV 583 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDH 433 +G+P L IP LG +FR ++ +FI TP+++ KP + +++R H Sbjct: 584 NTKTLTSTQGVPGLKDIPGLGRIFRRDTKTEDKVSLFIFLTPYVIEKPEELSEITR--QH 641 Query: 434 YSVEDDAKAFFFNRVNK 450 + ++ K R K Sbjct: 642 QKMAEELKKLIEEREKK 658 >gi|260222239|emb|CBA31603.1| hypothetical protein Csp_D27950 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 711 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 44/266 (16%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----------------SFAADFGGKF 238 QV ++ IAEV D + G Q ++G S S AA Sbjct: 398 QVFVESLIAEVSADKAAEFGIQWQGALGNAGDSAIGVLGTNFGSAGSNIISLAAAGASGT 457 Query: 239 VSEGGDFSVKGVLDRFSFETVL----HALERATAIRTLAEPTLTAIS--------GQSAS 286 VS ++ GV +R + VL LE + L+ P L + GQ+ Sbjct: 458 VSPAKGLNI-GVANRTNGVYVLGFLARFLESTGSGNVLSTPNLLTLDNEEAKIVIGQNVP 516 Query: 287 FTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 F +G + S+ G+ ++ D G+ L P + G I L I EVS V+ Sbjct: 517 FVTG---QFTNTGSNGGSVNPFQTIERKDVGLTLKVKPQISENGTIKLAIYQEVSS-VLA 572 Query: 343 VNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 AG + P+ R ++ V + G +VL GLL+D+ +E +P L+ +P G LF++ Sbjct: 573 STAGAANGPTTNKRTIESNVLVEDGAVVVLGGLLQDEYAGNQEKVPGLADVPWFGNLFKS 632 Query: 401 SRFNREETEIFIAATPFLVKPVAMRD 426 +R++T + + ++PV +RD Sbjct: 633 ESRSRKKTNLMV-----FLRPVVVRD 653 >gi|297567918|ref|YP_003686888.1| type II and III secretion system protein [Meiothermus silvanus DSM 9946] gi|296852367|gb|ADH65380.1| type II and III secretion system protein [Meiothermus silvanus DSM 9946] Length = 670 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 22/243 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L+V + ++ +IG + ++ GP S AD G G + G+L Sbjct: 395 QVDLQVRVEQLSSSNGDEIG---AALEAALGP-LSLKADPGSGQYGLGLEVGKTGLLK-- 448 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-------TVSSSTGATSV 307 L AL+ A R+L + T SG+S + SGG L S T T + Sbjct: 449 -LNAALKALQSAGKGRSLIDSRFTVSSGESVNLLSGGSLLIPLTSTGTGGSSGGTSTTGL 507 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 ++G+ L TPTV+ +I L + + S P +G N + ++ + V L SG Sbjct: 508 QNVEFGLELKLTPTVIPGDKIQLGVNINLGSAPTVGPNNSTL--VPKQQLTSNVLLSSGN 565 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT-----PFLVKP 421 + VL G++ + ++ + GIP+L +P++G LF + + +T + I T P VKP Sbjct: 566 SAVLGGVISVEEKESRSGIPVLMDLPLIGGLFSQTVKSSSQTHLLIVVTAVSRLPEAVKP 625 Query: 422 VAM 424 +M Sbjct: 626 ASM 628 >gi|319639388|ref|ZP_07994138.1| type IV pilus biogenesis and competence protein pilQ [Neisseria mucosa C102] gi|317399283|gb|EFV79954.1| type IV pilus biogenesis and competence protein pilQ [Neisseria mucosa C102] Length = 710 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + A E +T++ P + + A SG + Y+ SSS GATS+T + L T Sbjct: 542 ISASEEQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEASSS-GATSITFKKAVLGLTVT 600 Query: 320 PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G+I + ++ P+ V++ + +T + GGT+++ G+ +++ Sbjct: 601 PNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEES 660 Query: 379 QQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLVKPV 422 +P+L IP++G LF R R NR E IFI TP ++ V Sbjct: 661 TNAVNKVPILGDIPVVGNLFKSRGKRENRRELLIFI--TPRIMDNV 704 >gi|145636296|ref|ZP_01791965.1| competence protein E [Haemophilus influenzae PittHH] gi|145270461|gb|EDK10395.1| competence protein E [Haemophilus influenzae PittHH] Length = 445 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|260550835|ref|ZP_05825042.1| type II secretory pathway [Acinetobacter sp. RUH2624] gi|260406145|gb|EEW99630.1| type II secretory pathway [Acinetobacter sp. RUH2624] Length = 721 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 11/179 (6%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311 F + L AL+ ++ P + Q+A +G Q Y+T ++S ++ TT D Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQTTTNSAAGSTATTSFKD 606 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367 + L+ TP++ G+I +++ ++S+ + AG P+ + +T V + +G T Sbjct: 607 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 661 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++L G+ + + +P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 662 VILGGVFEQTTTNSQTKVPFFGDIPVVGHLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720 >gi|288942750|ref|YP_003444990.1| type IV pilus secretin PilQ [Allochromatium vinosum DSM 180] gi|288898122|gb|ADC63958.1| type IV pilus secretin PilQ [Allochromatium vinosum DSM 180] Length = 787 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 2/177 (1%) Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 DF + G + + + L A++R ++ P + A+ G + Y+ S G Sbjct: 607 DFLI-GKVGSYLIQLELSAMQREGRGEIISSPRVITADKNKATIKVGSEIPYQE-QSGQG 664 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 TS+ + + L TP + RI + ++ P + + P R T V + Sbjct: 665 NTSIAFKEAVLQLDVTPQITPDDRIIMDLEVRKDRPDWSRSINNTPPIDTRSVKTNVVID 724 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +G T+VL G+ + + KE +P L +P+LG LF+ TE+ I TP ++K Sbjct: 725 NGETVVLGGVFEREKTFSKEQVPWLGDVPVLGRLFKQEARQDSNTELLIFVTPKILK 781 >gi|145630388|ref|ZP_01786169.1| competence protein E [Haemophilus influenzae R3021] gi|144984123|gb|EDJ91560.1| competence protein E [Haemophilus influenzae R3021] Length = 447 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|308095101|ref|ZP_05903504.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus Peru-466] gi|308085930|gb|EFO35625.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus Peru-466] Length = 624 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 16/233 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248 + ++ + ++I ++ + L+Q+G G S G ++ D V+ G S K Sbjct: 292 QSRIEVALSIVDISANDLRQLGVDWR-AGVSVGNNRIVDIKTTGDVDNGDVTLGSGQSFK 350 Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +LD + +L LE + + ++ PTL A + K V T A Sbjct: 351 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 410 Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T YG +L P ++ + I L + E + D+PS R + T Sbjct: 411 EEVT--YGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDLPSVRKTEISTLA 468 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412 + G ++++ G+ +D++ +PLL IP LGALFR N+ R +FI Sbjct: 469 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFI 521 >gi|145640400|ref|ZP_01795984.1| competence protein E [Haemophilus influenzae R3021] gi|145274986|gb|EDK14848.1| competence protein E [Haemophilus influenzae 22.4-21] Length = 445 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|107101302|ref|ZP_01365220.1| hypothetical protein PaerPA_01002336 [Pseudomonas aeruginosa PACS2] Length = 776 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 26/252 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEG 242 Q+ ++ I E+ +I +G Q ++ FA D G GK +E Sbjct: 352 QLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFA-DSGLSIGTLLGALQAGKPPAEL 410 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D ++ G+ R F ++ AL R + L+ P+L + Q A G ++T S +T Sbjct: 411 PDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTT 469 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351 A T+V D GV L TP + + L I+ E+S + A D+ + Sbjct: 470 SASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVTN 529 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R +TV G IVL GL++DD+ + +PLL IP +G LFR+SR R + + Sbjct: 530 K-RSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588 Query: 412 IAATPFLVKPVA 423 + P +V+ A Sbjct: 589 VFLRPSIVRDAA 600 >gi|16272383|ref|NP_438596.1| competence protein E [Haemophilus influenzae Rd KW20] gi|260580502|ref|ZP_05848330.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae RdAW] gi|1169008|sp|P31772|COME_HAEIN RecName: Full=Competence protein E; AltName: Full=DNA transformation protein ComE; Flags: Precursor gi|1573410|gb|AAC22094.1| competence protein E (comE) [Haemophilus influenzae Rd KW20] gi|260092844|gb|EEW76779.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae RdAW] Length = 445 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|145628805|ref|ZP_01784605.1| competence protein E [Haemophilus influenzae 22.1-21] gi|145638655|ref|ZP_01794264.1| competence protein E [Haemophilus influenzae PittII] gi|144979275|gb|EDJ88961.1| competence protein E [Haemophilus influenzae 22.1-21] gi|145272250|gb|EDK12158.1| competence protein E [Haemophilus influenzae PittII] gi|309750149|gb|ADO80133.1| Outer membrane secretin ComE [Haemophilus influenzae R2866] Length = 445 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|229846521|ref|ZP_04466629.1| competence protein E [Haemophilus influenzae 7P49H1] gi|229810614|gb|EEP46332.1| competence protein E [Haemophilus influenzae 7P49H1] Length = 445 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|148976513|ref|ZP_01813209.1| Type II secretory pathway, component EpsD [Vibrionales bacterium SWAT-3] gi|145964089|gb|EDK29346.1| Type II secretory pathway, component EpsD [Vibrionales bacterium SWAT-3] Length = 674 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 49/250 (19%) Query: 215 FQHSITGSSSG------------PSKSFAADFGGKFV-----SEGGDFS--------VKG 249 Q+S TG+S G + + D GKF+ +E GD+S V G Sbjct: 375 IQYSNTGASIGGVMVGLEEAKDTETTTAVYDKNGKFLGNETTTEQGDYSTLASALSGVNG 434 Query: 250 VLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + ++ A+ + L+ P++T + ASF G + V TG+T+ Sbjct: 435 AAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVG-----EEVPVLTGSTA 489 Query: 307 VTTHD----------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 +++D G+ L P + + L+I+ EVS V+G N + R+ Sbjct: 490 GSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQL 548 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T+V + G +VL GL+ + + + +P L IP+LG LF+++ E+ + + Sbjct: 549 NTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVEKKNLMV---- 604 Query: 417 FLVKPVAMRD 426 +KP +RD Sbjct: 605 -FIKPTIIRD 613 >gi|284097759|ref|ZP_06385757.1| Type II secretory pathway, component PulD [Candidatus Poribacteria sp. WGA-A3] gi|283830734|gb|EFC34846.1| Type II secretory pathway, component PulD [Candidatus Poribacteria sp. WGA-A3] Length = 406 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/176 (22%), Positives = 81/176 (46%), Gaps = 11/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SV 307 FE V+ AL+ ++ +++P + ++ Q A G + T +++ G V Sbjct: 229 FEGVIQALQEQGDVQVVSQPRILTLNNQPALIKVGTDQSFFTSTTTQGTAGAGNIVTEQV 288 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T G+VL TP + G I + + T +++ V N P V+++ V + Sbjct: 289 RTVTSGLVLSVTPQISRDGWIMMDVSPIITRLTDTVESRNGSTAPVLEVKQSGGLVRIRD 348 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G +++ GL+++ + + +P L +P+LG+ F + TE+ I P +++ Sbjct: 349 GQLVMIGGLIQEQLTNTERAVPFLGDLPVLGSFFSGTYQAERNTELVIFLMPRILR 404 >gi|262394108|ref|YP_003285962.1| type III secretion system outer membrane pore YscC [Vibrio sp. Ex25] gi|262337702|gb|ACY51497.1| type III secretion system outer membrane pore YscC [Vibrio sp. Ex25] Length = 604 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 16/233 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248 + ++ + ++I ++ + L Q+G G S G ++ D V+ G + K Sbjct: 272 QSRIEVALSIVDISANDLSQLGVDWR-AGVSVGNNRIVDIKTTGDVSSGDVTLGSGQNFK 330 Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +LD + +L LE + + ++ PTL A + K V T A Sbjct: 331 SLLDSTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 390 Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T YG +L P ++ + +I L + E + D+PS R + T Sbjct: 391 EEVT--YGTLLRIVPRIVGDRFAARPKINLSLHLEDGAKITDGGVDDLPSVRKTEISTLA 448 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412 + G ++++ G+ +D++ +PLL IP LGALFR N+ R +FI Sbjct: 449 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTKRRTVRMFI 501 >gi|160872504|ref|ZP_02062636.1| putative fimbrial assembly protein PilQ [Rickettsiella grylli] gi|159121303|gb|EDP46641.1| putative fimbrial assembly protein PilQ [Rickettsiella grylli] Length = 442 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 4/147 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ A ++ P L Q A +G + Y+ +S G TS+ + L T Sbjct: 284 LSALEKEGAAEVISTPHLITADQQPAFIEAGDEIPYQE-KASGGGTSLIFKKAVLSLKVT 342 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P ++ RI L ++ +P D P+ + R T + + SG TIVL G+ + Sbjct: 343 PQIMPQERIILDLEVNQDQP--NSVMVDAPTIKARGIKTQIIVKSGETIVLGGVYEYSQG 400 Query: 380 QLKEGIPLLSKIPILGALFRNSR-FNR 405 +L++ +P L +P++G LFR ++ +NR Sbjct: 401 KLEQRVPFLGSLPLIGRLFRLTKVYNR 427 >gi|268679665|ref|YP_003304096.1| pilus (MSHA type) biogenesis protein MshL [Sulfurospirillum deleyianum DSM 6946] gi|268617696|gb|ACZ12061.1| pilus (MSHA type) biogenesis protein MshL [Sulfurospirillum deleyianum DSM 6946] Length = 506 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 37/198 (18%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-------T 297 FSV G++D L + + ++ P + ++ Q A T G Y+ Sbjct: 302 FSVSGLIDF---------LGSSGDAKVVSSPKVLTMNNQQALITVGDNINYRIPEETDAA 352 Query: 298 VSSSTGATSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVS------------EPVI 341 +S T SVT +Y GV+L+ TP + I LRI VS EP Sbjct: 353 TTSGTATLSVTYMNYSIFIGVLLNITPEISEDNEIILRINPSVSSFKYTDDDQKTTEP-- 410 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 P + +K T V++ G TI+L GL+ + +PLLS IP+LG F++S Sbjct: 411 ---REIAPDTQEKKLSTVVKVKDGSTIILGGLIASEKGHENSSVPLLSSIPLLGEAFKHS 467 Query: 402 RFNREETEIFIAATPFLV 419 + E+ TP ++ Sbjct: 468 EETLKTKELVFVITPRII 485 >gi|121610459|ref|YP_998266.1| general secretion pathway protein D [Verminephrobacter eiseniae EF01-2] gi|121555099|gb|ABM59248.1| general secretion pathway protein D [Verminephrobacter eiseniae EF01-2] Length = 740 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 1/156 (0%) Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PV 340 G + F +G + S+ T+V D G++L P + G + L + EVS+ Sbjct: 531 GNNVPFVTGSYANSSSNSTVNPFTTVQRQDVGLMLRVRPQINENGTVKLSVYQEVSKIDA 590 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + P+ R ++ V + G IV+ GLL+D ++ +P+L +P+LG LFR+ Sbjct: 591 STLTSPNGPTTSKRSIESNVLVEDGSIIVIGGLLEDSYSLNQDKVPVLGDMPVLGNLFRS 650 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + R +T + I P +++ A D+ D + ++ Sbjct: 651 EKRTRNKTNLMIFLRPTVLRSSASSDILTADRYDAI 686 >gi|131592|sp|P15644|GSPD_KLEPN RecName: Full=General secretion pathway protein D; AltName: Full=Pullulanase secretion envelope pulD; Flags: Precursor gi|7246031|gb|AAA25126.2| pulD (ttg start codon) [Klebsiella pneumoniae] Length = 660 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 16/181 (8%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 ++ +L AL +T LA P++ + A+F G + T S +T +V Sbjct: 423 NWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERK 482 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDM-PSYRVRKADTTVELPSGGT 367 G+ L P + + L I+ EVS ++ D+ ++ R + V + SG T Sbjct: 483 TVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGET 542 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFLVKPVAMR 425 +V+ GLL + + +PLL IP++GALFR++ + ++ +FI +P +R Sbjct: 543 VVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFI-------RPTVIR 595 Query: 426 D 426 D Sbjct: 596 D 596 >gi|86147852|ref|ZP_01066158.1| MSHA biogenesis protein MshL [Vibrio sp. MED222] gi|85834379|gb|EAQ52531.1| MSHA biogenesis protein MshL [Vibrio sp. MED222] Length = 562 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 21/186 (11%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-GQHLYKTVSSSTGA--------- 304 SFE VL ++ + L+ P +TA + Q A G ++ +SSS G+ Sbjct: 354 SFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGIDKYFVTNLSSSVGSGDNANVAPE 413 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----------PVIGVNAGDMPSYRV 353 +T G+ L TP + G + L + V E GV + + Sbjct: 414 VELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEVKELNLGSTTGVVTLPLAKSSI 473 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R++D+ + G +V+ GL+K + + +P L IP LG LFRN+ ++TE+ I Sbjct: 474 RESDSVIRAQDGDVVVIGGLMKSNTSDMTSKVPFLGDIPALGHLFRNTSQLTQKTELVIL 533 Query: 414 ATPFLV 419 P +V Sbjct: 534 LKPTVV 539 >gi|261381191|ref|ZP_05985764.1| type IV pilus biogenesis protein PilQ [Neisseria subflava NJ9703] gi|284795810|gb|EFC51157.1| type IV pilus biogenesis protein PilQ [Neisseria subflava NJ9703] Length = 710 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + A E +T++ P + + A SG + Y+ SSS GATS+T + L T Sbjct: 542 ISASEEQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEASSS-GATSITFKKAVLGLTVT 600 Query: 320 PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G+I + ++ P+ V++ + +T + GGT+++ G+ +++ Sbjct: 601 PNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEES 660 Query: 379 QQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLVKPV 422 +P+L IP++G LF R R NR E IFI TP ++ V Sbjct: 661 TNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFI--TPRIMDNV 704 >gi|145632680|ref|ZP_01788414.1| competence protein E [Haemophilus influenzae 3655] gi|144986875|gb|EDJ93427.1| competence protein E [Haemophilus influenzae 3655] Length = 401 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 223 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 282 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 283 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 342 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 343 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 385 >gi|193062144|ref|ZP_03043240.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli E22] gi|194426396|ref|ZP_03058951.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli B171] gi|260845704|ref|YP_003223482.1| T3SS structure protein EscC [Escherichia coli O103:H2 str. 12009] gi|260858255|ref|YP_003232146.1| T3SS structure protein EscC [Escherichia coli O26:H11 str. 11368] gi|13447709|gb|AAK26708.1|AF200363_16 EscC [Escherichia coli] gi|18034513|gb|AAL57535.1|AF453441_19 EscC [Escherichia coli] gi|17384643|emb|CAC81855.1| EscC protein [Escherichia coli] gi|57434464|emb|CAI43881.1| EscC protein [Escherichia coli] gi|192932364|gb|EDV84962.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli E22] gi|194415704|gb|EDX31971.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli B171] gi|195183205|dbj|BAG66750.1| T3SS structure protein EscC [Escherichia coli O111:H-] gi|254692333|emb|CAR47974.1| EscC protein [Escherichia coli] gi|254692401|emb|CAR48044.1| EscC protein [Escherichia coli] gi|257756904|dbj|BAI28406.1| T3SS structure protein EscC [Escherichia coli O26:H11 str. 11368] gi|257760851|dbj|BAI32348.1| T3SS structure protein EscC [Escherichia coli O103:H2 str. 12009] gi|323163017|gb|EFZ48850.1| hypothetical protein ECE128010_0613 [Escherichia coli E128010] Length = 512 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 41/248 (16%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 Q+ + V+I +V + L+Q+G S T GS + S + A+ +S +F ++ Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGSIAFNSSTAQANLSSSVISNANNFMIR- 333 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307 ++AL++ + + L++P++ ++ A Y VS A+ S+ Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382 Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGDMPSY--RV 353 T+ G +L TP +L R+ L IQ + ++ NA D S V Sbjct: 383 TS---GTLLRVTPRILDDNSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSILPEV 438 Query: 354 RKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE-TEI 410 + ++ T E L +G +++L G ++D K+GIPLLS IP++G LF ++ + + Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGNLFSSTTKQKHSVVRL 498 Query: 411 F-IAATPF 417 F I ATP Sbjct: 499 FLIKATPI 506 >gi|300697020|ref|YP_003747681.1| type II secretory pathway, gspD-related protein [Ralstonia solanacearum CFBP2957] gi|299073744|emb|CBJ53265.1| putative type II secretory pathway, gspD-related protein [Ralstonia solanacearum CFBP2957] Length = 761 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 8/157 (5%) Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328 LA P + A + + A G + + T S+STG + SV D G+ L P++ + Sbjct: 404 LANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEV 463 Query: 329 GLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 ++I EVS I +G + +Y++ R A+T ++L G T +LAGL+K Sbjct: 464 SMKINLEVSSLTNQITTRSGTV-AYQIGTRSANTVLKLHDGETQLLAGLIKTQQTSSAAR 522 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 IP L IP+LG LF + N EI ++ TP +VKP Sbjct: 523 IPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP 559 >gi|223936189|ref|ZP_03628102.1| type II and III secretion system protein [bacterium Ellin514] gi|223895051|gb|EEF61499.1| type II and III secretion system protein [bacterium Ellin514] Length = 906 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 43/223 (19%) Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS-------GGQHLYKTV 298 +V G+L F + ALE+ + L P +T SG+ A + GQ + Sbjct: 662 TVTGLLTDPQFRVAIRALEQRDGVDLLTAPDVTTESGRQAQIQAIDIQTIVTGQQFGQGA 721 Query: 299 SSSTGATSV---------TTHDY-------GVVLHFTPTVLSPG-RIGLRIQTEVSE--- 338 + + A+ V TT Y G VL P V + + + I V+E Sbjct: 722 NGANAASGVGSTVIQNTATTSQYTTQTLPFGPVLDVIPYVSADEFSVQMTIIPTVTEFVQ 781 Query: 339 -----PVIG-----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 P + V A +P +R+R+ T+V + T+VL GL+ D + ++K Sbjct: 782 YDPPGPFVPQASAIAGGTSVVGALPLPHFRMRQVTTSVTVWDSQTVVLGGLITDSVTKIK 841 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + +PLL +P +G LFR+ + + + I TP ++ P R Sbjct: 842 DQVPLLGDMPFVGRLFRSESSQKTKKNLVIFVTPTIINPDGSR 884 >gi|148827632|ref|YP_001292385.1| competence protein E [Haemophilus influenzae PittGG] gi|148718874|gb|ABR00002.1| competence protein E [Haemophilus influenzae PittGG] Length = 445 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 267 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 326 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 327 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKGGETIVLGGVFHDT 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 387 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 429 >gi|163802236|ref|ZP_02196131.1| general secretion pathway protein D precursor [Vibrio sp. AND4] gi|159174041|gb|EDP58851.1| general secretion pathway protein D precursor [Vibrio sp. AND4] Length = 675 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 104/235 (44%), Gaps = 29/235 (12%) Query: 239 VSEGGDFS--------VKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 V+E GD+S V G L + ++ A+ + L+ P++T + ASF Sbjct: 415 VTESGDYSTLAAALGGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASF 474 Query: 288 TSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 G + + S++GA +V + G+ L P + + L I+ EVS V+ Sbjct: 475 IVG-EEVPVITGSTSGANNDNPFQTVDRKEVGIKLKVVPQINEGDSVHLDIEQEVSN-VL 532 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G + R+ +T+V + G +VL GL+ + + + +PLL IP++G LF+++ Sbjct: 533 GAEGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERAMESESKVPLLGDIPVIGQLFKST 592 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 ++ + + +KP +RD D + + F R ++Y +E Sbjct: 593 STQTQKRNLMV-----FIKPTIIRDGMTADGITQ-----RKYNFIRAEQLYKAQE 637 >gi|294788170|ref|ZP_06753413.1| type IV pilus secretin PilQ [Simonsiella muelleri ATCC 29453] gi|294483601|gb|EFG31285.1| type IV pilus secretin PilQ [Simonsiella muelleri ATCC 29453] Length = 700 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 2/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E +T++ P + + A G Q Y+T + G+ + D + + T Sbjct: 532 LSAMEEENRSKTISSPRVLTQDRKEAEIRQGTQIPYQT-RDADGSYTTAFKDAVLSMKVT 590 Query: 320 PTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + I L + +NA P+ V++ T + +GGT+V+ G+ ++ I Sbjct: 591 PRITPDNNIILDVTINKDNVDNTRINADGEPAISVKQVKTQAMVENGGTLVVGGVYQEQI 650 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +PLL +P+LG LF++ N + +E+ TP +++ Sbjct: 651 SNNISKVPLLGDVPVLGNLFKSKSRNHQRSEVLFFITPRIIE 692 >gi|260654164|ref|ZP_05859654.1| putative bacterial type II/III secretion system short domain protein [Jonquetella anthropi E3_33 E1] gi|260631149|gb|EEX49343.1| putative bacterial type II/III secretion system short domain protein [Jonquetella anthropi E3_33 E1] Length = 531 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 12/215 (5%) Query: 194 DQVTLKVTIAEVRRD-------ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 DQV +K I EV D +L+ + Q ++ SS S F D G Sbjct: 295 DQVMIKARIIEVNDDATSEMESVLQAVYHQWWLSFSSGVASLGFF-DSSSPLAPSSGTAQ 353 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 G + R + +E+ A R LA+PT+ + G A+ + Y + G Sbjct: 354 GAGTVARMLDARIAGLVEKGKA-RVLADPTVVVLDGHKATIKLVDRVKYVSWRDDAGNPG 412 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELP 363 + + G L TP V S G + + + + E V G D+P R+ ++V + Sbjct: 413 YSDEEVGPRLEVTPRVGSEGGMTISMALKTGEIVQWKRGGLGEDVPQISEREVSSSVRVL 472 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G V+ GL K+ + + + IP+L +P+LG+LF Sbjct: 473 DGQPFVVGGLFKESVSKTTQRIPVLGDLPLLGSLF 507 >gi|315125412|ref|YP_004067415.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas sp. SM9913] gi|315013925|gb|ADT67263.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas sp. SM9913] Length = 696 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 3/159 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE +A P +TA + Q A G + Y S+S+GAT+V+ + L T Sbjct: 534 LTALEEENKGEIIASPRITAANQQKARIEQGTEIPY-VESASSGATTVSFKKAVLSLEVT 592 Query: 320 PTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + ++ L I + + G + ++ +T V + +G T+VL G+ + Sbjct: 593 PHITPDNKVILNLIITQDTRGDTVQTGTGPAVAIDTQQIETQVLVENGQTVVLGGIFQQQ 652 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 I + +PLL +P +G LF+++ E+ E+ I TP Sbjct: 653 IINSTKKVPLLGDLPYVGRLFKSTSEFNEKRELLIFVTP 691 >gi|325284394|ref|YP_004256934.1| type II and III secretion system protein [Deinococcus proteolyticus MRP] gi|324316458|gb|ADY27571.1| type II and III secretion system protein [Deinococcus proteolyticus MRP] Length = 784 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 16/198 (8%) Query: 227 SKSFAADF-----GGKFVSEGGDFSV--KGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 +K+ D+ G F + G S+ L S E L+A RTL + TA Sbjct: 490 AKALGLDWKLGLGGVTFGQQNGSLSLGYTPSLTPASIEAKLNATLSNGNGRTLIDSQFTA 549 Query: 280 ISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +SGQ F +GG+ +++ SS+ G T T+ YG+ + P + G + L + T Sbjct: 550 LSGQETKFQNGGELVFRPQSSTVGDNTVQTPAQTYSYGLDITMRPRIAPDGTVVLVLDTT 609 Query: 336 VSEPVIGVNAGDMPS-YRVRKA-DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + P + G + S + R+A TTV++ G T+VL G++ + GIP L +P+ Sbjct: 610 LGNPPV---RGVLDSIQQTRQALKTTVQIRPGETVVLGGVVTSSVSNSSSGIPGLRDLPV 666 Query: 394 LGALFRNSRFNREETEIF 411 +G LF +R + + Sbjct: 667 IGPLFGQQSTDRNDDALL 684 >gi|299768549|ref|YP_003730575.1| Type II secretory pathway, component HofQ [Acinetobacter sp. DR1] gi|298698637|gb|ADI89202.1| Type II secretory pathway, component HofQ [Acinetobacter sp. DR1] Length = 721 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 87/179 (48%), Gaps = 11/179 (6%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311 F + L AL+ ++ P + Q A +G Q Y++ ++S ++ TT D Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQPAKVATGQQVPYQSTTNSAAGSTATTSFKD 606 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367 + L+ TP++ G+I +++ ++S+ + AG P+ + + +T V + +G T Sbjct: 607 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNQINTNVLVNNGET 661 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++L G+ + + +P IP+LG LFR + ++ E+ I TP +V +R+ Sbjct: 662 VILGGVFEQTTTNSQTKVPFFGDIPVLGHLFRKDVKSDDKQELLIFVTPRIVNDTLVRN 720 >gi|73542815|ref|YP_297335.1| type II and III secretion system secretin [Ralstonia eutropha JMP134] gi|72120228|gb|AAZ62491.1| type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal [Ralstonia eutropha JMP134] Length = 706 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + + A G + Y+ +SS GATSV + L T Sbjct: 543 LSALEADGKGKIISSPRVVTANNIKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVT 601 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ +G+ + + T V + +GGT+V+ G+ Sbjct: 602 PQITPEGNVLLDV--DVNKDSVGIQTTSGFAIDTKHVQTQVLVDNGGTVVIGGIYTQTES 659 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + +P L IP+LG LF+N+ R TE+ + TP Sbjct: 660 TDVDKVPFLGDIPVLGYLFKNNAKVRNRTELLVFLTP 696 >gi|91212377|ref|YP_542363.1| type II secretion protein GspD [Escherichia coli UTI89] gi|218560038|ref|YP_002392951.1| general secretion pathway protein D precursor [Escherichia coli S88] gi|237706291|ref|ZP_04536772.1| type II secretion protein GspD [Escherichia sp. 3_2_53FAA] gi|91073951|gb|ABE08832.1| hypothetical type II secretion protein GspD [Escherichia coli UTI89] gi|218366807|emb|CAR04576.1| general secretion pathway protein D precursor [Escherichia coli S88] gi|226899331|gb|EEH85590.1| type II secretion protein GspD [Escherichia sp. 3_2_53FAA] gi|294493975|gb|ADE92731.1| general secretion pathway protein D [Escherichia coli IHE3034] gi|307625435|gb|ADN69739.1| general secretion pathway protein D precursor [Escherichia coli UM146] gi|323951515|gb|EGB47390.1| general secretion pathway protein D [Escherichia coli H252] Length = 686 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|260773652|ref|ZP_05882568.1| type II secretory pathway component PulD [Vibrio metschnikovii CIP 69.14] gi|260612791|gb|EEX37994.1| type II secretory pathway component PulD [Vibrio metschnikovii CIP 69.14] Length = 536 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 67/268 (25%), Positives = 111/268 (41%), Gaps = 32/268 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ +++ ++ + QV L+ I EV + Q G S T SS+G VS Sbjct: 247 RQFLDMSHLRIQRQVILEAKILEVTLNDGFQQGINWSKTFSSNGNDYQLGQGVISNPVSS 306 Query: 242 -----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 GG ++ V+ SF+ VL + + L+ P +TA + Q A G Sbjct: 307 LPGMDAIGTLLGGQTNL--VVKSGSFDAVLSFMSTQGDLNVLSSPRVTAANNQKAVIKVG 364 Query: 291 GQHLYKT-VSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVS 337 Y T ++S G +T G+ L TP + G + L + EV Sbjct: 365 TDEYYVTDLTSEVGTGDNANVAPNIQLTPFFSGISLDVTPQIDDDGYVFLHVHPSVIEVE 424 Query: 338 EPVIGVNAGD----MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 E V D +P R +R++D+ + G +V+ GL+K + +P I Sbjct: 425 EQKKSVQFNDRIITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTMNQTSKVPFFGDI 484 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P+LG LFR + ++TE+ I P +V Sbjct: 485 PLLGHLFRQTSNVTQKTELVILLKPTVV 512 >gi|117625269|ref|YP_854407.1| putative type II secretion protein GspD [Escherichia coli APEC O1] gi|115514393|gb|ABJ02468.1| putative type II secretion protein GspD [Escherichia coli APEC O1] Length = 686 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|293603728|ref|ZP_06686147.1| type II secretion system protein D [Achromobacter piechaudii ATCC 43553] gi|292817902|gb|EFF76964.1| type II secretion system protein D [Achromobacter piechaudii ATCC 43553] Length = 611 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 5/181 (2%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--S 306 GV R L+ L++ + LA P + + + AS G + T +++ G S Sbjct: 380 GVTSRNDLSAALNLLQKRGKTKVLANPKIRVRNMEKASIKIGEKVPVVTTTNANGVVTES 439 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELP 363 V D G++L P + + +++ EVS V G + R A+T + Sbjct: 440 VNYQDVGLILQVEPRISLSNEVSVKVSMEVSNLKGEVKTAGGGVVYPMSTRNAETVMTAR 499 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G T VLAGL+ + G+P LS + LG+LF + + TEI + TP + + +A Sbjct: 500 DGETQVLAGLVNQQQTRSSSGVPGLSVMGWLGSLFGGQKKTDQNTEIVLLLTPHIERSMA 559 Query: 424 M 424 + Sbjct: 560 L 560 >gi|34499269|ref|NP_903484.1| type II secretion system protein [Chromobacterium violaceum ATCC 12472] gi|34105120|gb|AAQ61476.1| probable type II secretion system protein [Chromobacterium violaceum ATCC 12472] Length = 708 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 14/193 (7%) Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-------- 312 ALE+ +A P L + + A G + T + G + Y Sbjct: 475 QALEQEAQGNLVASPQLVTMDNEKAKIVIGQEIGVPTATYPAGTNGTSNAPYSTYDRKTV 534 Query: 313 GVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G L TP + G I ++I + + + AG P++ R DT V + GG + Sbjct: 535 GFGLEITPQISEGGTIRMKISQAADSIDQTTLSAAAG--PTFNRRTLDTVVTVGDGGLVA 592 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 L GL ++ ++ +PLL IP++G LF+ R++T + I P +++ + R ++ Sbjct: 593 LGGLTQETTSNAEDKVPLLGDIPVIGNLFKYQGKERKKTNLMIFIRPTIIRDEIGNRAVA 652 Query: 429 RPDDHYSVEDDAK 441 Y +ED A+ Sbjct: 653 GERYGYVMEDAAR 665 >gi|28896907|ref|NP_796512.1| general secretion pathway protein D [Vibrio parahaemolyticus RIMD 2210633] gi|260365906|ref|ZP_05778400.1| general secretion pathway protein D [Vibrio parahaemolyticus K5030] gi|260877807|ref|ZP_05890162.1| general secretion pathway protein D [Vibrio parahaemolyticus AN-5034] gi|260895544|ref|ZP_05904040.1| general secretion pathway protein D [Vibrio parahaemolyticus Peru-466] gi|260902568|ref|ZP_05910963.1| general secretion pathway protein D [Vibrio parahaemolyticus AQ4037] gi|28805115|dbj|BAC58396.1| general secretion pathway protein D precursor [Vibrio parahaemolyticus RIMD 2210633] gi|308088533|gb|EFO38228.1| general secretion pathway protein D [Vibrio parahaemolyticus Peru-466] gi|308089966|gb|EFO39661.1| general secretion pathway protein D [Vibrio parahaemolyticus AN-5034] gi|308109694|gb|EFO47234.1| general secretion pathway protein D [Vibrio parahaemolyticus AQ4037] gi|308113427|gb|EFO50967.1| general secretion pathway protein D [Vibrio parahaemolyticus K5030] Length = 675 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 21/165 (12%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPT 321 L+ P++T + ASF G + V TG+T+ + +D G+ L P Sbjct: 461 LSSPSITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQ 515 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + + Sbjct: 516 INEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALES 574 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + +PLL IP+LG LF+++ ++ + + +KP +RD Sbjct: 575 ESKVPLLGDIPVLGHLFKSTSTQTQKRNLMV-----FIKPTIIRD 614 >gi|229525096|ref|ZP_04414501.1| MSHA biogenesis protein MshL [Vibrio cholerae bv. albensis VL426] gi|229338677|gb|EEO03694.1| MSHA biogenesis protein MshL [Vibrio cholerae bv. albensis VL426] Length = 554 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 110/261 (42%), Gaps = 38/261 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSE-------- 241 QV L+ I EV Q G S SS+G S + + D G ++ Sbjct: 272 QVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSSGNPITSALPGLDAI 331 Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 GG +V V+ SF+ V+ + + L+ P +TA + Q A G Y T Sbjct: 332 GSLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 389 Query: 298 VSSS---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR-----IQTEVSEPVIG 342 SS TG + + D G+ L TP + G + L I+ E +I Sbjct: 390 DLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKIIT 449 Query: 343 VNAGD--MPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 N+ + +P R +R++D+ + G +V+ GL+K + + +P L +P LG LF Sbjct: 450 YNSQEITLPLARSSIRESDSVIRAKDGDVVVIGGLMKTNTIERVSKVPFLGDVPGLGNLF 509 Query: 399 RNSRFNREETEIFIAATPFLV 419 RN ++TE+ I P +V Sbjct: 510 RNISNQTQKTELVILLKPTVV 530 >gi|86146572|ref|ZP_01064894.1| Type II secretory pathway, component EpsD [Vibrio sp. MED222] gi|85835629|gb|EAQ53765.1| Type II secretory pathway, component EpsD [Vibrio sp. MED222] Length = 674 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 21/165 (12%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPT 321 L+ P++T + ASF G + V TG+T+ +++D G+ L P Sbjct: 460 LSSPSITVMDNGEASFIVG-----EEVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQ 514 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + L+I+ EVS V+G N + R+ +T+V + G +VL GL+ + + Sbjct: 515 INEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALES 573 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + +P L IP+LG LF+++ E+ + + +KP +RD Sbjct: 574 ESKVPFLGDIPVLGHLFKSTSTQVEKKNLMV-----FIKPTIIRD 613 >gi|188026465|ref|ZP_02962178.2| hypothetical protein PROSTU_04276 [Providencia stuartii ATCC 25827] gi|188019786|gb|EDU57826.1| hypothetical protein PROSTU_04276 [Providencia stuartii ATCC 25827] Length = 348 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 12/231 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV + I R L+++G + + S P+ S + ++ S G F++ + + Sbjct: 124 KQQVQITAHIISSSRTALQELGLEWGMLSGS--PNNSRYQRYN-RYDSSSGQFNLLRLGE 180 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 E L+ALE+ + +A P L A AS G + Y V+S+ T V D Sbjct: 181 GLL-ELKLNALEKENLLSIIASPRLMASHKHPASIQQGSEIPY--VTSTEKKTHVQFKDA 237 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVL 370 + + TPT+ + L ++ + P + D + K + T+V + + T++L Sbjct: 238 VLGMEVTPTLSRGDHVELLLKISHNSPDKAITTSDEHYLAINKQEIATSVTIRNNETLIL 297 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFLV 419 G+ + ++ + G+P LS IP+LG LF N+ +R +FI TP L+ Sbjct: 298 GGIFQQKQEKTETGLPFLSNIPLLGKLFTNTGEHIDRRVLVVFI--TPKLI 346 >gi|152998114|ref|YP_001342949.1| type II and III secretion system protein [Marinomonas sp. MWYL1] gi|150839038|gb|ABR73014.1| type II and III secretion system protein [Marinomonas sp. MWYL1] Length = 393 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 9/228 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--AADFGGKFVSEGGDFSVKGVLD 252 Q+ + IA+V R Q G S G S A D G + DFS G Sbjct: 169 QIEISAQIAQVSRTAQSQFGVNWQ-AKLSDGVRSSIGGAVDLGALTPTTSLDFSSIGGSG 227 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + L +E +++P + G A SG + Y+TVS S+ Sbjct: 228 LLAL--TLDMMESEGLANVVSKPKIVTSEGLPARIESGTEVPYQTVSDD--KVSIEFRQA 283 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 ++L TP V G I L + + + +G +PS + + T V + + T+VL G Sbjct: 284 VLMLEVTPFVKDSGHILLSLT--IHQDSVGDLVNGVPSLKTNRLKTQVVVKNQETLVLGG 341 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +++ + + +P S IP LG LF+ +E+ E+ + TP L++ Sbjct: 342 VFREERFESESRVPFFSDIPWLGELFKRQSEQQEKVELLVFITPKLLQ 389 >gi|167045577|gb|ABZ10227.1| putative bacterial type II and III secretion system protein [uncultured marine crenarchaeote HF4000_APKG10I20] Length = 648 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 21/243 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSE------------ 241 QV ++ I E+ + +++G + G P+ + + F +F+ + Sbjct: 408 QVLIEAKIVEISKTFSQELGISWGLVNPEPGFPTVTGNSTFDTQFLVDLRPTVDIATGNV 467 Query: 242 -GGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G D ++G L + L ALE++ R ++ P +T + A SG Y+ Sbjct: 468 AGFDSLIQGFLPGNIALNVRLEALEKSGKGRVISSPRVTTADNKEARVLSGRDIPYQV-- 525 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 +S S+ + + L TP V S I + I + A +P+ ++ T Sbjct: 526 NSVEGNSIQFVNAELSLTVTPHVTSDNSIYMTIDATKNAADFAQLAAGIPTITRKEMHTE 585 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET--EIFIAATPF 417 V + +G T VLAG+ + + K+ +P SK+P++G LFR F+ ++T E+ + TP Sbjct: 586 VLVGNGETTVLAGIYESTSTENKKAVPWFSKLPLVGFLFR--AFDDKDTINELLVFITPT 643 Query: 418 LVK 420 +V+ Sbjct: 644 IVE 646 >gi|167044898|gb|ABZ09565.1| putative bacterial type II and III secretion system protein [uncultured marine crenarchaeote HF4000_APKG8D22] Length = 637 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 21/243 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSE------------ 241 QV ++ I E+ + +++G + G P+ + + F +F+ + Sbjct: 397 QVLIEAKIVEISKTFSQELGISWGLVNPEPGFPTVTGNSTFDTQFLVDLRPTVDIATGNV 456 Query: 242 -GGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G D ++G L + L ALE++ R ++ P +T + A SG Y+ Sbjct: 457 AGFDSLIQGFLPGNIALNVRLEALEKSGKGRVISSPRVTTADNKEARVLSGRDIPYQV-- 514 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 +S S+ + + L TP V S I + I + A +P+ ++ T Sbjct: 515 NSVEGNSIQFVNAELSLTVTPHVTSDNSIYMTIDATKNAADFAQLAAGIPTITRKEMHTE 574 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET--EIFIAATPF 417 V + +G T VLAG+ + + K+ +P SK+P++G LFR F+ ++T E+ + TP Sbjct: 575 VLVGNGETTVLAGIYESTSTENKKAVPWFSKLPLVGFLFR--AFDDKDTINELLVFITPT 632 Query: 418 LVK 420 +V+ Sbjct: 633 IVE 635 >gi|225077283|ref|ZP_03720482.1| hypothetical protein NEIFLAOT_02342 [Neisseria flavescens NRL30031/H210] gi|224951427|gb|EEG32636.1| hypothetical protein NEIFLAOT_02342 [Neisseria flavescens NRL30031/H210] Length = 710 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + A E +T++ P + + A SG + Y+ +SS GATS+T + L T Sbjct: 542 ISASEEQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEAASS-GATSITFKKAVLGLTVT 600 Query: 320 PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G+I + ++ P+ V++ + +T + GGT+++ G+ +++ Sbjct: 601 PNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEES 660 Query: 379 QQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLVKPV 422 +P+L IP++G LF R R NR E IFI TP ++ V Sbjct: 661 TNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFI--TPHIMDNV 704 >gi|315288713|gb|EFU48111.1| general secretion pathway protein D [Escherichia coli MS 110-3] Length = 681 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 454 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 512 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 513 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 570 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 571 LGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKEKRNLMV-----FIRPTILRD 622 >gi|270157060|ref|ZP_06185717.1| type II secretory pathway protein LspD [Legionella longbeachae D-4968] gi|289164527|ref|YP_003454665.1| type II protein secretion LspD [Legionella longbeachae NSW150] gi|269989085|gb|EEZ95339.1| type II secretory pathway protein LspD [Legionella longbeachae D-4968] gi|288857700|emb|CBJ11543.1| type II protein secretion LspD [Legionella longbeachae NSW150] Length = 786 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 59/259 (22%), Positives = 112/259 (43%), Gaps = 34/259 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---HSITGSSSGPSKSFAADFGGKF 238 K+V+ L+I Q+ ++ +AE+ +D + +G + + TG G FA Sbjct: 489 KRVIGQLDIKPA-QLLIEALVAEINQDDVNDLGIEWGSNQQTGKPGGFRNGFAIINSKTQ 547 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------ 292 +++ F+ ++AL RA L+ P++ + + A G Q Sbjct: 548 IAD--------------FQAQIYALARAHKANILSTPSVVVLDNRQAKILVGKQVSVAST 593 Query: 293 HLYKTVSSSTGATSVTTHD-YGVVLHF--TPTVLSPGRIGLRIQ--TEVSEPVIGVNAGD 347 + +T A+ TT D V LH P + I ++I + +P A Sbjct: 594 NYPNNAGGTTPASPYTTFDRVNVALHLYVRPQITRGNGIQMQIDQGNDTLDPPATAEASV 653 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P++R+ T+V + SG +VL GL +D + +P+L +P +G LF+ + RE+ Sbjct: 654 NPTFRISSIVTSVHVESGDIVVLGGLTQDRLDNDNNRLPVLGDLPGVGRLFKRNINTREK 713 Query: 408 TEIFIAATPFLVKPVAMRD 426 + + +KP+ +R+ Sbjct: 714 RVLMV-----FIKPIILRN 727 >gi|261209946|ref|ZP_05924246.1| MSHA biogenesis protein MshL [Vibrio sp. RC341] gi|260841011|gb|EEX67543.1| MSHA biogenesis protein MshL [Vibrio sp. RC341] Length = 551 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 21/197 (10%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 GG +V V+ SFE VL + + L+ P +TA + Q A G Y T SS Sbjct: 333 GGQSNV--VVSSGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSS 390 Query: 302 ---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR-----IQTEVSEPVIGVNAG 346 TG + + D G+ L TP + G + L I+ E I N+ Sbjct: 391 VVGTGDNAQASPDITLTPFFSGISLDVTPQIDDKGNVLLHVHPAVIEVEQQTKRITYNSQ 450 Query: 347 --DMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++P R +R++D+ + G +V+ GL+K + +P L +P LG LFRN+ Sbjct: 451 QIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDRVAKVPFLGDVPGLGHLFRNTS 510 Query: 403 FNREETEIFIAATPFLV 419 ++TE+ I P +V Sbjct: 511 KQTQKTELVILLKPTVV 527 >gi|84386329|ref|ZP_00989357.1| Type II secretory pathway, component EpsD [Vibrio splendidus 12B01] gi|84378753|gb|EAP95608.1| Type II secretory pathway, component EpsD [Vibrio splendidus 12B01] Length = 674 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 49/250 (19%) Query: 215 FQHSITGSSSG------------PSKSFAADFGGKFV-----SEGGDFS--------VKG 249 Q+S TG+S G + + D GKF+ +E GD+S V G Sbjct: 375 IQYSNTGASIGGVMVGLEEAKDSETTTAVYDSDGKFLRNETTTEEGDYSTLASALSGVNG 434 Query: 250 VLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + ++ A+ + L+ P++T + ASF G + V TG+T+ Sbjct: 435 AAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVG-----EEVPVLTGSTA 489 Query: 307 VTTHD----------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 +++D G+ L P + + L+I+ EVS V+G N + R+ Sbjct: 490 GSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQL 548 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T+V + G +VL GL+ + + + +P L IP+LG LF+++ E+ + + Sbjct: 549 NTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVEKKNLMV---- 604 Query: 417 FLVKPVAMRD 426 +KP +RD Sbjct: 605 -FIKPTIIRD 613 >gi|295677888|ref|YP_003606412.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1002] gi|295437731|gb|ADG16901.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1002] Length = 572 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 23/242 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAA-------DFGGKFVSEGGDFS 246 QV ++ I E + + +G + S+ G+S+ G S+ D + +S G D + Sbjct: 336 QVLIEAQIVEGEQGFSRNLGVRLSLAGTSADGTSRGLTGGTDGTVYDLSARPIS-GFDAA 394 Query: 247 VKGVLDRFSFETV------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G L F+ L ALE + ++ P + A G + Y+ Sbjct: 395 TAG-LTLFAAHATRLLNIELSALESEGHGKIVSSPRVVTADRMKAIVEQGTELPYQ-AKV 452 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G + V + L P ++ GR+ L + +V++ +G P+ + T V Sbjct: 453 GQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRV 510 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFL 418 E+ GGT+ + G+ + D + E +P+L KIP+LGALFR+ R R E +FI TP + Sbjct: 511 EVEDGGTVSIGGIYETDDRDDVERVPVLGKIPVLGALFRHRTHRDTRSELAVFI--TPRV 568 Query: 419 VK 420 V+ Sbjct: 569 VR 570 >gi|171059300|ref|YP_001791649.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] gi|170776745|gb|ACB34884.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] Length = 662 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 10/160 (6%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKT---VSSSTGATSVTTH-----DYGVVLHFTPTVL 323 LA P + A + + A G + T +G +SV T D G+ L P V Sbjct: 405 LASPRIRARNKEKARILVGDKVPVITNLITPQQSGQSSVITGSIQYVDVGIKLEVEPQVY 464 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQL 381 + G +G+++ EVS + +Y++ R A T + L G T ++AGL+ D + Sbjct: 465 ADGDVGIKVNLEVSNIAKTITTSSGVAYQIGTRNATTALRLHDGETQMMAGLINDQDRST 524 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P L ++P++G LF ++ + ++EI ++ TP +V+P Sbjct: 525 ASKLPGLGQLPVIGRLFTSTNASGGKSEIVLSITPRIVRP 564 >gi|74316567|ref|YP_314307.1| putative Type II secretory pathway component PulD [Thiobacillus denitrificans ATCC 25259] gi|74056062|gb|AAZ96502.1| putative Type II secretory pathway component PulD [Thiobacillus denitrificans ATCC 25259] Length = 581 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 21/192 (10%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--------- 306 F + LE + L+ P L A++ Q+A +Y V + T AT+ Sbjct: 373 FTAAIDLLESFGKAKVLSSPKLMALNNQTALLKVVDNLVYFNVKADTTATANVGTTTTFT 432 Query: 307 --VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVN-AGDMPSYRVR 354 T G+V+ TP + G + L ++ +S P I V +P +VR Sbjct: 433 TTPQTVPVGIVMTMTPQINENGMVSLTVRPTISRNVGFVRDPNPSIPVAIPNQVPVIQVR 492 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + ++ +++ SG T++L GL++DD ++GIP LS+ +GA+F +TE+ I Sbjct: 493 EMESLLQVRSGQTVILGGLIQDDSNNARDGIPGLSRPEGIGAVFGQHEQINSQTELVIFL 552 Query: 415 TPFLVKPVAMRD 426 P +V ++ D Sbjct: 553 RPIVVANPSLED 564 >gi|207724227|ref|YP_002254624.1| general secretion pathway gspd-related protein [Ralstonia solanacearum MolK2] gi|206589440|emb|CAQ36401.1| general secretion pathway gspd-related protein [Ralstonia solanacearum MolK2] Length = 761 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 8/157 (5%) Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328 LA P + A + + A G + + T S+STG + SV D G+ L P++ + Sbjct: 404 LANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEV 463 Query: 329 GLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 ++I EVS I +G + +Y++ R A+T ++L G T +LAGL+K Sbjct: 464 SMKINLEVSSLTNQITTRSGTV-AYQIGTRSANTVLKLHDGETQLLAGLIKTQQTSSAAR 522 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 IP L IP+LG LF + N EI ++ TP +VKP Sbjct: 523 IPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP 559 >gi|77917753|ref|YP_355568.1| putative type II secretion system protein [Pelobacter carbinolicus DSM 2380] gi|77543836|gb|ABA87398.1| putative type II secretion system protein [Pelobacter carbinolicus DSM 2380] Length = 779 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 3/134 (2%) Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D GV L P + + + EVS E N S KA TT+ L +G Sbjct: 451 DVGVKLDIEPKIQLDDTVVTNLSLEVSGVTEKNTTANGSLALSISTTKAQTTLTLKNGER 510 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 V+ GL++DD + ++ IPLL +P++G LF N ++++ EI ++ TP +++ V + D Sbjct: 511 TVIGGLIRDDSTKTRKIIPLLGDLPLIGRLFTNHNKDKKKREILLSITPHILQNVDLPDR 570 Query: 428 SRPDDHYSVEDDAK 441 + D E++ K Sbjct: 571 TLTDIWSGSEEELK 584 >gi|193067486|ref|ZP_03048454.1| general secretion pathway protein GspD [Escherichia coli E110019] gi|192959443|gb|EDV89878.1| general secretion pathway protein GspD [Escherichia coli E110019] Length = 686 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|193734249|gb|ACF19898.1| PilQ [Kingella kingae] Length = 700 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 2/161 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E +T++ P + + A G Q Y T SS G +S D + L T Sbjct: 532 LSAMETENLTKTISTPRVLTQDRKEAEIRQGTQIPY-TTRSSDGDSSTAFKDAVLSLKVT 590 Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + +I L I EP VNA P R T + G T+V+ G+ ++ + Sbjct: 591 PRITPDSKIILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATLVVGGIYQEQM 650 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP+LG LF++ +R E+ TP ++ Sbjct: 651 ANNVSKVPLLGDIPVLGNLFKSRSRSRSRNELLFFITPRIM 691 >gi|187250988|ref|YP_001875470.1| type II secretion system [rpteom [Elusimicrobium minutum Pei191] gi|186971148|gb|ACC98133.1| Putatively involved in type II secretion system [Elusimicrobium minutum Pei191] Length = 527 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 8/177 (4%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS---GGQHLYKTVSSSTGATSV 307 LD SF VL +L + L +P + I+ Q A S +S +TG+T+V Sbjct: 349 LDFSSFSIVLKSLLTRGEAKYLGKPKVVTINNQPAVIESTRDAAVGFASNLSGNTGSTNV 408 Query: 308 TTHD-----YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 + G+ L TP V G I L I+ S + R A T V + Sbjct: 409 VSQTAERKTVGLTLKVTPQVNKEGYITLLIEPSYSSVANSAVSDGTKDTLNRSASTLVRV 468 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G T+VL GLL +PLL IP++G LF +E T++ I TP ++ Sbjct: 469 KNGQTVVLGGLLSSREILEDRKVPLLGDIPLIGWLFTQRSTTKETTDMVIFVTPTIL 525 >gi|226944981|ref|YP_002800054.1| type II and III secretion system protein [Azotobacter vinelandii DJ] gi|226719908|gb|ACO79079.1| type II and III secretion system protein [Azotobacter vinelandii DJ] Length = 614 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 128/282 (45%), Gaps = 43/282 (15%) Query: 153 TIQDSQRAVELSET-FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 T++D+ AV L+E FL+Q N +V L++ + EV R + Sbjct: 311 TMRDTPDAVHLAERLFLAQDQAN-------------------PEVVLELEVMEVSRKRIL 351 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFSFET--VLHALERATA 268 +G Q T A+ G VS G +G+ DR +F L + Sbjct: 352 DLGLQWPNTFG-------ILAEDGTSAVSILGQL--RGIDSDRINFSPSPTLKINANDSD 402 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321 + TLA P L +S + + G+ + ++ST +T ++T D G+ L PT Sbjct: 403 VNTLASPVLR-VSNREQARIHIGERVPVVSATSTPSTQGPVITENITYLDVGLKLEVEPT 461 Query: 322 VLSPGRIGLRIQTEVSEP--VIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378 + + +++ EVS + AG +P R A TT+ L +G T VLAGL+++D Sbjct: 462 IHLNDEVAIKVGLEVSNATQLTRTEAGTIPIQVDTRNAVTTLRLRNGETQVLAGLMRNDQ 521 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + IP L IP +G LF +++ ++E+ ++ TP +V+ Sbjct: 522 GKSGDRIPGLGDIPGIGRLFGSNKDTLSKSELVLSITPRIVR 563 >gi|254483140|ref|ZP_05096374.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2148] gi|214036662|gb|EEB77335.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2148] Length = 727 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 42/295 (14%) Query: 176 YANSSSKKV----MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 YA S KV ++ L++ QV ++ +I EV + G + + S S Sbjct: 442 YATSMQYKVIKTALDQLDVVAT-QVIIEASIIEVSLTDELRYGLEWTF-------SNSLG 493 Query: 232 ADFGGK-FVSE-GGDFSVKGVLDRFSF---------ETVLHALERATAIRTLAEPTLTAI 280 AD+ G F+S G S ++ FS+ VL+AL + + ++ P++ + Sbjct: 494 ADYDGSGFLSSIAGAESPASIVPGFSYTVTNSIGNVSAVLNALAEESLLNIISTPSVMVL 553 Query: 281 SGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 A G Q + S TG+ S+T D GV L P+V + G I + Sbjct: 554 DNHYAYIHVGQQ--VPIIDSQTGSLANDTDRVTQSITYRDTGVKLDVRPSVNAGGLITMD 611 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + V++ A ++ R ++ V + S ++VL GL++++ +G+P L + Sbjct: 612 VAQSVTDVGEIDAATGQRAFLERNIESRVAVRSNESVVLGGLIRENSGTASQGVPWLHSV 671 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 PI+G+LF TE+ + TP R L D+ SV ++ ++ N Sbjct: 672 PIVGSLFGTDSARSNRTELLVIITP--------RALYNEDELRSVSEEMRSKIRN 718 >gi|207739033|ref|YP_002257426.1| general secretion pathway gspd-related protein [Ralstonia solanacearum IPO1609] gi|206592404|emb|CAQ59310.1| general secretion pathway gspd-related protein [Ralstonia solanacearum IPO1609] Length = 761 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 8/157 (5%) Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328 LA P + A + + A G + + T S+STG + SV D G+ L P++ + Sbjct: 404 LANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEV 463 Query: 329 GLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 ++I EVS I +G + +Y++ R A+T ++L G T +LAGL+K Sbjct: 464 SMKINLEVSSLTNQITTRSGTV-AYQIGTRSANTVLKLHDGETQLLAGLIKTQQTSSAAR 522 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 IP L IP+LG LF + N EI ++ TP +VKP Sbjct: 523 IPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP 559 >gi|157162438|ref|YP_001459756.1| general secretion pathway protein D [Escherichia coli HS] gi|157068118|gb|ABV07373.1| general secretion pathway protein D [Escherichia coli HS] Length = 686 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|332973070|gb|EGK11007.1| type IV pilus biogenesis protein PilQ [Kingella kingae ATCC 23330] Length = 700 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 2/161 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E +T++ P + + A G Q Y T SS G +S D + L T Sbjct: 532 LSAMETENLTKTISTPRVLTQDRKEAEIRQGTQIPY-TTRSSDGDSSTAFKDAVLSLKVT 590 Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + +I L I EP VNA P R T + G T+V+ G+ ++ + Sbjct: 591 PRITPDSKIILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATLVVGGIYQEQM 650 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP+LG LF++ +R E+ TP ++ Sbjct: 651 ANNVSKVPLLGDIPVLGNLFKSRSRSRSRNELLFFITPRIM 691 >gi|323978963|gb|EGB74043.1| general secretion pathway protein D [Escherichia coli TW10509] Length = 686 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|218706590|ref|YP_002414109.1| general secretion pathway protein D [Escherichia coli UMN026] gi|300900296|ref|ZP_07118475.1| general secretion pathway protein D [Escherichia coli MS 198-1] gi|331648754|ref|ZP_08349842.1| general secretion pathway protein D [Escherichia coli M605] gi|331664576|ref|ZP_08365482.1| general secretion pathway protein D [Escherichia coli TA143] gi|218433687|emb|CAR14602.1| general secretion pathway protein D precursor [Escherichia coli UMN026] gi|300356186|gb|EFJ72056.1| general secretion pathway protein D [Escherichia coli MS 198-1] gi|331042501|gb|EGI14643.1| general secretion pathway protein D [Escherichia coli M605] gi|331058507|gb|EGI30488.1| general secretion pathway protein D [Escherichia coli TA143] Length = 686 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|90580860|ref|ZP_01236662.1| putative fimbrial assembly protein [Vibrio angustum S14] gi|90437931|gb|EAS63120.1| putative fimbrial assembly protein [Vibrio angustum S14] Length = 574 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 7/164 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ ++ P L + ++A G + Y SSS GATSV+ + L T Sbjct: 412 LSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVT 470 Query: 320 PTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P + ++ L + EV++ G G S ++ T V + +G T+VL G+ + Sbjct: 471 PQITPDDKLVLDL--EVTQDNKGEDVPTGTGTAISIDTQRIGTQVLVNNGETVVLGGIYQ 528 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +PLL IP+LGALFR+ + E+ I TP +V Sbjct: 529 HSMTNVTRKVPLLGDIPVLGALFRHKMEQMGKRELLIFVTPKIV 572 >gi|315633544|ref|ZP_07888834.1| type IV pilus secretin PilQ [Aggregatibacter segnis ATCC 33393] gi|315477586|gb|EFU68328.1| type IV pilus secretin PilQ [Aggregatibacter segnis ATCC 33393] Length = 474 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y V+ +G SV + + L T Sbjct: 275 LTALERENNVEIIASPRLLTTNKKSASIKQGTELPYIMVNEKSGTQSVEFREAVLGLEVT 334 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + +I L + + P + G++ S ++ +T V G TIVL G+ D Sbjct: 335 PHISLDKQILLDLIVSQNAPGSRVAYGLGEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 394 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + + +PLL IP + LF ++ E+ I TP +++ Sbjct: 395 ITKSLDKVPLLGDIPGIKHLFSKESDRHQKRELVIFVTPHILR 437 >gi|262273168|ref|ZP_06050984.1| type II secretory pathway component EpsD [Grimontia hollisae CIP 101886] gi|262222746|gb|EEY74055.1| type II secretory pathway component EpsD [Grimontia hollisae CIP 101886] Length = 671 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 8/155 (5%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSP 325 L+ P+L + + ASF G + + S+TG+ +V D GV L TP + Sbjct: 459 LSSPSLMVLDNEEASFIVG-EEVPVVTGSTTGSNNDNPFQTVERKDVGVKLKITPQINEG 517 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L I+ E+S V+G + + R+ T+V IVL+GL+ + + ++ + Sbjct: 518 DSVQLNIEQEISN-VLGASGAVDIRFGKRQLTTSVLAADQQMIVLSGLIDEQTNESEQKV 576 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 PLL IP+LG LF+++ + + + + P +++ Sbjct: 577 PLLGDIPLLGHLFKSTSSGKTKRNLMLFIKPTIIR 611 >gi|324018098|gb|EGB87317.1| general secretion pathway protein D [Escherichia coli MS 117-3] Length = 686 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|320181011|gb|EFW55932.1| General secretion pathway protein D [Shigella boydii ATCC 9905] Length = 686 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|309785192|ref|ZP_07679823.1| general secretion pathway protein D [Shigella dysenteriae 1617] gi|308926312|gb|EFP71788.1| general secretion pathway protein D [Shigella dysenteriae 1617] Length = 681 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 454 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 512 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 513 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 570 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 571 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 622 >gi|209920436|ref|YP_002294520.1| putative type II secretion protein [Escherichia coli SE11] gi|256019113|ref|ZP_05432978.1| putative type II secretion protein [Shigella sp. D9] gi|332280218|ref|ZP_08392631.1| general secretion pathway protein D [Shigella sp. D9] gi|209913695|dbj|BAG78769.1| putative type II secretion protein [Escherichia coli SE11] gi|320201874|gb|EFW76449.1| General secretion pathway protein D [Escherichia coli EC4100B] gi|332102570|gb|EGJ05916.1| general secretion pathway protein D [Shigella sp. D9] Length = 686 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|191171834|ref|ZP_03033380.1| general secretion pathway protein GspD [Escherichia coli F11] gi|215488288|ref|YP_002330719.1| putative type II secretion protein [Escherichia coli O127:H6 str. E2348/69] gi|312968706|ref|ZP_07782915.1| general secretion pathway protein D [Escherichia coli 2362-75] gi|190907869|gb|EDV67462.1| general secretion pathway protein GspD [Escherichia coli F11] gi|215266360|emb|CAS10797.1| putative type II secretion protein [Escherichia coli O127:H6 str. E2348/69] gi|312286924|gb|EFR14835.1| general secretion pathway protein D [Escherichia coli 2362-75] gi|312947523|gb|ADR28350.1| general secretion pathway protein D precursor [Escherichia coli O83:H1 str. NRG 857C] gi|320195111|gb|EFW69740.1| General secretion pathway protein D [Escherichia coli WV_060327] Length = 686 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|218708199|ref|YP_002415820.1| type II secretory pathway subunit EpsD [Vibrio splendidus LGP32] gi|218321218|emb|CAV17168.1| Type II secretory pathway, component EpsD [Vibrio splendidus LGP32] Length = 674 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 21/165 (12%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPT 321 L+ P++T + ASF G + V TG+T+ +++D G+ L P Sbjct: 460 LSSPSITVMDNGEASFIVG-----EEVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQ 514 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + L+I+ EVS V+G N + R+ +T+V + G +VL GL+ + + Sbjct: 515 INEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALES 573 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + +P L IP+LG LF+++ E+ + + +KP +RD Sbjct: 574 ESKVPFLGDIPVLGHLFKSTSTQVEKKNLMV-----FIKPTIIRD 613 >gi|39995438|ref|NP_951389.1| general secretion pathway protein D [Geobacter sulfurreducens PCA] gi|39982201|gb|AAR33662.1| general secretion pathway protein D, putative [Geobacter sulfurreducens PCA] Length = 632 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 109/266 (40%), Gaps = 52/266 (19%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ IAEV D LK +G Q G V GD S VLD F Sbjct: 360 QVFVQALIAEVSLDKLKDVGVQ-----------------IGALAVGTQGDASGGAVLDPF 402 Query: 255 SFETV------------------------LHALERATAIRTLAEPT-LTAISGQSASFTS 289 +F + + AL AI L+ P LT+ + ++ F Sbjct: 403 NFLSATSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVG 462 Query: 290 GGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + +TG S+ D G+ L TP + + L I E+S + N G Sbjct: 463 ENVPFLSQTNLTTGGISQQSIERKDTGITLRITPQISEGEYVKLDIYQEIS--AVKENKG 520 Query: 347 ---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 D+ + + R A T V + T+V+ GL++D + IPLL IP+LG LF+ Sbjct: 521 QANDLVTTK-RSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKST 579 Query: 404 NREETEIFIAATPFLVKPV-AMRDLS 428 RE+T + I TP +++ M D+S Sbjct: 580 RREKTNLMIVLTPRIIRGAEEMNDVS 605 >gi|307634685|gb|ADI83160.2| type II secretion system lipoprotein GspD, putative [Geobacter sulfurreducens KN400] Length = 632 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 105/257 (40%), Gaps = 51/257 (19%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ IAEV D LK +G Q G V GD S VLD F Sbjct: 360 QVFVQALIAEVSLDKLKDVGVQ-----------------IGALAVGTQGDASGGAVLDPF 402 Query: 255 SFETV------------------------LHALERATAIRTLAEPT-LTAISGQSASFTS 289 +F + + AL AI L+ P LT+ + ++ F Sbjct: 403 NFLSATSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVG 462 Query: 290 GGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + +TG S+ D G+ L TP + + L I E+S + N G Sbjct: 463 ENVPFLSQTNLTTGGISQQSIERKDTGITLRITPQISEGEYVKLDIYQEIS--AVKENKG 520 Query: 347 ---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 D+ + + R A T V + T+V+ GL++D + IPLL IP+LG LF+ Sbjct: 521 QANDLVTTK-RSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKST 579 Query: 404 NREETEIFIAATPFLVK 420 RE+T + I TP +++ Sbjct: 580 RREKTNLMIVLTPRIIR 596 >gi|301155450|emb|CBW14916.1| predicted fimbrial transporter [Haemophilus parainfluenzae T3T1] Length = 460 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 2/177 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y + SV + + L T Sbjct: 276 LTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDTQSVEFREAVLGLEVT 335 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P + ++ S ++ +T V G TIVL G+ D Sbjct: 336 PHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 395 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 I + + +PLL IP + LF ++ E+ I TP ++K ++++ + H+ Sbjct: 396 ITKGIDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMAKKEKHF 452 >gi|170681179|ref|YP_001745227.1| general secretion pathway protein GspD [Escherichia coli SMS-3-5] gi|170518897|gb|ACB17075.1| general secretion pathway protein GspD [Escherichia coli SMS-3-5] Length = 686 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|83746420|ref|ZP_00943472.1| GspE-related protein [Ralstonia solanacearum UW551] gi|83726961|gb|EAP74087.1| GspE-related protein [Ralstonia solanacearum UW551] Length = 744 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 8/157 (5%) Query: 272 LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328 LA P + A + + A G + + T S+STG + SV D G+ L P++ + Sbjct: 387 LANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEV 446 Query: 329 GLRIQTEVSEPV--IGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 ++I EVS I +G + +Y++ R A+T ++L G T +LAGL+K Sbjct: 447 SMKINLEVSSLTNQITTRSGTV-AYQIGTRSANTVLKLHDGETQLLAGLIKTQQTSSAAR 505 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 IP L IP+LG LF + N EI ++ TP +VKP Sbjct: 506 IPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP 542 >gi|332529515|ref|ZP_08405473.1| type II and III secretion system protein [Hylemonella gracilis ATCC 19624] gi|332041035|gb|EGI77403.1| type II and III secretion system protein [Hylemonella gracilis ATCC 19624] Length = 509 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 2/126 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L VS+S+GATS++ ++L TP + G + L + +VS+ +G + + Sbjct: 375 GTELPYQVSTSSGATSISFRKANLMLEVTPQITPEGNVILEV--DVSKDSVGQDTQAGFA 432 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + ++ IP L +P LGALFR E+ E+ Sbjct: 433 IDTKHVKTQVLVENGGTVVIGGIYTQEERETVTKIPFLGDLPGLGALFRAKETRSEKREM 492 Query: 411 FIAATP 416 + TP Sbjct: 493 LVFITP 498 >gi|325498531|gb|EGC96390.1| type II secretion protein GspD [Escherichia fergusonii ECD227] Length = 686 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|324119774|gb|EGC13654.1| general secretion pathway protein D [Escherichia coli E1167] Length = 686 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|331684607|ref|ZP_08385199.1| general secretion pathway protein D [Escherichia coli H299] gi|331078222|gb|EGI49428.1| general secretion pathway protein D [Escherichia coli H299] Length = 686 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|293412339|ref|ZP_06655062.1| general secretion pathway protein D [Escherichia coli B354] gi|293449309|ref|ZP_06663730.1| general secretion pathway protein D [Escherichia coli B088] gi|291322399|gb|EFE61828.1| general secretion pathway protein D [Escherichia coli B088] gi|291469110|gb|EFF11601.1| general secretion pathway protein D [Escherichia coli B354] Length = 679 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 452 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 510 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 511 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 568 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 569 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 620 >gi|157157281|ref|YP_001464424.1| general secretion pathway protein D [Escherichia coli E24377A] gi|188495193|ref|ZP_03002463.1| general secretion pathway protein D [Escherichia coli 53638] gi|191169103|ref|ZP_03030864.1| general secretion pathway protein GspD [Escherichia coli B7A] gi|193062082|ref|ZP_03043178.1| general secretion pathway protein GspD [Escherichia coli E22] gi|260869724|ref|YP_003236126.1| putative type II secretion protein GspD [Escherichia coli O111:H- str. 11128] gi|300824048|ref|ZP_07104169.1| general secretion pathway protein D [Escherichia coli MS 119-7] gi|300905916|ref|ZP_07123648.1| general secretion pathway protein D [Escherichia coli MS 84-1] gi|301304138|ref|ZP_07210254.1| general secretion pathway protein D [Escherichia coli MS 124-1] gi|307310403|ref|ZP_07590051.1| general secretion pathway protein D [Escherichia coli W] gi|309794068|ref|ZP_07688493.1| general secretion pathway protein D [Escherichia coli MS 145-7] gi|331669777|ref|ZP_08370622.1| general secretion pathway protein D [Escherichia coli TA271] gi|331679035|ref|ZP_08379707.1| general secretion pathway protein D [Escherichia coli H591] gi|157079311|gb|ABV19019.1| general secretion pathway protein D [Escherichia coli E24377A] gi|188490392|gb|EDU65495.1| general secretion pathway protein D [Escherichia coli 53638] gi|190900855|gb|EDV60643.1| general secretion pathway protein GspD [Escherichia coli B7A] gi|192932302|gb|EDV84900.1| general secretion pathway protein GspD [Escherichia coli E22] gi|257766080|dbj|BAI37575.1| predicted type II secretion protein GspD [Escherichia coli O111:H- str. 11128] gi|300402269|gb|EFJ85807.1| general secretion pathway protein D [Escherichia coli MS 84-1] gi|300523438|gb|EFK44507.1| general secretion pathway protein D [Escherichia coli MS 119-7] gi|300840551|gb|EFK68311.1| general secretion pathway protein D [Escherichia coli MS 124-1] gi|306909298|gb|EFN39793.1| general secretion pathway protein D [Escherichia coli W] gi|308122475|gb|EFO59737.1| general secretion pathway protein D [Escherichia coli MS 145-7] gi|309703398|emb|CBJ02737.1| type II secretion system protein D [Escherichia coli ETEC H10407] gi|315062282|gb|ADT76609.1| type II secretion system lipoprotein D [Escherichia coli W] gi|315253339|gb|EFU33307.1| general secretion pathway protein D [Escherichia coli MS 85-1] gi|323178670|gb|EFZ64246.1| general secretion pathway protein D [Escherichia coli 1180] gi|323377134|gb|ADX49402.1| general secretion pathway protein D [Escherichia coli KO11] gi|331062690|gb|EGI34604.1| general secretion pathway protein D [Escherichia coli TA271] gi|331073100|gb|EGI44423.1| general secretion pathway protein D [Escherichia coli H591] Length = 686 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|320661717|gb|EFX29125.1| General secretion pathway protein D [Escherichia coli O55:H7 str. USDA 5905] Length = 686 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|254038140|ref|ZP_04872198.1| general secretion pathway protein D [Escherichia sp. 1_1_43] gi|226839764|gb|EEH71785.1| general secretion pathway protein D [Escherichia sp. 1_1_43] gi|323971766|gb|EGB66992.1| general secretion pathway protein D [Escherichia coli TA007] Length = 686 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|222034685|emb|CAP77427.1| hypothetical type II secretion proteinGspD [Escherichia coli LF82] Length = 679 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 452 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 510 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 511 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 568 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 569 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 620 >gi|17223826|gb|AAL10693.1| hypothetical type II secretion protein [Escherichia coli ETEC H10407] Length = 616 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 389 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 447 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 448 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 505 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 506 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 557 >gi|52426025|ref|YP_089162.1| GspD protein [Mannheimia succiniciproducens MBEL55E] gi|52308077|gb|AAU38577.1| GspD protein [Mannheimia succiniciproducens MBEL55E] Length = 478 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ ++ +A P L + +SAS G + Y V+ V + + L T Sbjct: 295 LTALEQENNVKIIASPRLLTTNKKSASIKQGTEIPYVAVNRKNDTEHVEFREAVLGLEVT 354 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P + I L + + P G N G++ S ++ +T V G TIVL G+ Sbjct: 355 PHISKDNSILLDLIVSQNSP--GANIVYGNGNLISIDKQEINTQVFAKDGETIVLGGVFN 412 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 D I + ++ +P+L IP++ LF ++ E+ I TP ++K Sbjct: 413 DTITKSEDKVPILGDIPLIKHLFSKESEKHQKRELVIFVTPHILK 457 >gi|323966493|gb|EGB61926.1| general secretion pathway protein D [Escherichia coli M863] gi|327251745|gb|EGE63431.1| general secretion pathway protein D [Escherichia coli STEC_7v] Length = 686 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|323960851|gb|EGB56471.1| general secretion pathway protein D [Escherichia coli H489] Length = 686 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|331659244|ref|ZP_08360186.1| general secretion pathway protein D [Escherichia coli TA206] gi|331053826|gb|EGI25855.1| general secretion pathway protein D [Escherichia coli TA206] Length = 686 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|306816695|ref|ZP_07450827.1| general secretion pathway protein D precursor [Escherichia coli NC101] gi|305850260|gb|EFM50719.1| general secretion pathway protein D precursor [Escherichia coli NC101] Length = 686 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|301326853|ref|ZP_07220153.1| general secretion pathway protein D [Escherichia coli MS 78-1] gi|300846528|gb|EFK74288.1| general secretion pathway protein D [Escherichia coli MS 78-1] Length = 686 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|110643200|ref|YP_670930.1| type II secretion protein GspD [Escherichia coli 536] gi|194436907|ref|ZP_03069007.1| general secretion pathway protein GspD [Escherichia coli 101-1] gi|218550223|ref|YP_002384014.1| general secretion pathway protein D [Escherichia fergusonii ATCC 35469] gi|218555536|ref|YP_002388449.1| general secretion pathway protein D [Escherichia coli IAI1] gi|218696673|ref|YP_002404340.1| general secretion pathway protein D precursor [Escherichia coli 55989] gi|254162916|ref|YP_003046024.1| type II secretion protein GspD [Escherichia coli B str. REL606] gi|291284343|ref|YP_003501161.1| General secretion pathway protein D [Escherichia coli O55:H7 str. CB9615] gi|300931844|ref|ZP_07147141.1| general secretion pathway protein D [Escherichia coli MS 187-1] gi|300950837|ref|ZP_07164722.1| general secretion pathway protein D [Escherichia coli MS 116-1] gi|300958340|ref|ZP_07170482.1| general secretion pathway protein D [Escherichia coli MS 175-1] gi|110344792|gb|ABG71029.1| hypothetical type II secretion protein GspD [Escherichia coli 536] gi|194424389|gb|EDX40376.1| general secretion pathway protein GspD [Escherichia coli 101-1] gi|218353405|emb|CAU99456.1| general secretion pathway protein D precursor [Escherichia coli 55989] gi|218357764|emb|CAQ90408.1| general secretion pathway protein D precursor [Escherichia fergusonii ATCC 35469] gi|218362304|emb|CAQ99925.1| general secretion pathway protein D precursor [Escherichia coli IAI1] gi|242378520|emb|CAQ33305.1| pulD [Escherichia coli BL21(DE3)] gi|253974817|gb|ACT40488.1| GspD, hypothetical type II secretion protein [Escherichia coli B str. REL606] gi|253978972|gb|ACT44642.1| GspD, hypothetical type II secretion protein [Escherichia coli BL21(DE3)] gi|284922988|emb|CBG36080.1| type II secretion system protein D [Escherichia coli 042] gi|290764216|gb|ADD58177.1| General secretion pathway protein D [Escherichia coli O55:H7 str. CB9615] gi|300314983|gb|EFJ64767.1| general secretion pathway protein D [Escherichia coli MS 175-1] gi|300449873|gb|EFK13493.1| general secretion pathway protein D [Escherichia coli MS 116-1] gi|300460267|gb|EFK23760.1| general secretion pathway protein D [Escherichia coli MS 187-1] gi|320656346|gb|EFX24253.1| General secretion pathway protein D [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320666867|gb|EFX33843.1| General secretion pathway protein D [Escherichia coli O157:H7 str. LSU-61] gi|324114991|gb|EGC08956.1| general secretion pathway protein D [Escherichia fergusonii B253] gi|332344919|gb|AEE58253.1| general secretion pathway protein GspD [Escherichia coli UMNK88] Length = 686 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|293406579|ref|ZP_06650505.1| hypothetical protein ECGG_01885 [Escherichia coli FVEC1412] gi|291426585|gb|EFE99617.1| hypothetical protein ECGG_01885 [Escherichia coli FVEC1412] Length = 679 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 452 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 510 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 511 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 568 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 569 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 620 >gi|323183550|gb|EFZ68947.1| general secretion pathway protein D [Escherichia coli 1357] Length = 686 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|307293364|ref|ZP_07573210.1| general secretion pathway protein D [Sphingobium chlorophenolicum L-1] gi|306881430|gb|EFN12646.1| general secretion pathway protein D [Sphingobium chlorophenolicum L-1] Length = 716 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 20/178 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------- 305 F +++A++ T L+ P++ + Q AS G Q V +TG Sbjct: 464 FGAIINAVKSDTDSNILSTPSVMTLDNQKASILVGQQ-----VPITTGEALSQNFDNQFR 518 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVEL 362 +V D G+ L P + + G I L ++ EVS PV N D+ + R+ +TTV + Sbjct: 519 TVQRQDVGIKLEVKPQINTGGAIKLFLKQEVSSVAGPVSNSNT-DLIINK-REIETTVTV 576 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G + L GLL D+ ++ E IPLLS IP +G LF++ +R +T + + P +++ Sbjct: 577 DDGEILALGGLLDDNERKTIERIPLLSDIPGIGELFKSRSKSRTKTNLMVFIRPTILR 634 >gi|256024452|ref|ZP_05438317.1| general secretion pathway protein D precursor [Escherichia sp. 4_1_40B] Length = 686 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|218701737|ref|YP_002409366.1| general secretion pathway protein D [Escherichia coli IAI39] gi|227887667|ref|ZP_04005472.1| type II secretion protein GspD [Escherichia coli 83972] gi|301019909|ref|ZP_07184044.1| general secretion pathway protein D [Escherichia coli MS 196-1] gi|218371723|emb|CAR19573.1| general secretion pathway protein D precursor [Escherichia coli IAI39] gi|227835063|gb|EEJ45529.1| type II secretion protein GspD [Escherichia coli 83972] gi|299882007|gb|EFI90218.1| general secretion pathway protein D [Escherichia coli MS 196-1] gi|307555055|gb|ADN47830.1| general secretion pathway protein GspD [Escherichia coli ABU 83972] Length = 686 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|281180003|dbj|BAI56333.1| putative type II secretion protein [Escherichia coli SE15] Length = 659 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 432 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 490 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 491 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 548 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 549 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 600 >gi|218691255|ref|YP_002399467.1| general secretion pathway protein D [Escherichia coli ED1a] gi|218428819|emb|CAR09618.1| general secretion pathway protein D precursor [Escherichia coli ED1a] Length = 686 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|323188610|gb|EFZ73895.1| general secretion pathway protein D [Escherichia coli RN587/1] Length = 686 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|315297663|gb|EFU56940.1| general secretion pathway protein D [Escherichia coli MS 16-3] Length = 681 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 454 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 512 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 513 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 570 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 571 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 622 >gi|269967259|ref|ZP_06181323.1| putative type III secretion protein YscC [Vibrio alginolyticus 40B] gi|269828115|gb|EEZ82385.1| putative type III secretion protein YscC [Vibrio alginolyticus 40B] Length = 624 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 16/233 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248 + ++ + ++I ++ + L Q+G G S G ++ D V+ G + K Sbjct: 292 QSRIEVALSIVDISANDLSQLGVDWR-AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFK 350 Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +LD + +L LE + + ++ PTL A + K V T A Sbjct: 351 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 410 Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T YG +L P ++ + I L + E + D+PS R + T Sbjct: 411 EEVT--YGTLLRIVPRIVGDRFAARPEINLSLHLEDGAKIADGGVDDLPSVRKTEISTLA 468 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412 + G ++++ G+ +D++ +PLL IP LGALFR N+ R +FI Sbjct: 469 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTKRRTVRMFI 521 >gi|170765481|ref|ZP_02900292.1| general secretion pathway protein GspD [Escherichia albertii TW07627] gi|170124627|gb|EDS93558.1| general secretion pathway protein GspD [Escherichia albertii TW07627] Length = 686 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 627 >gi|300993062|ref|ZP_07180170.1| general secretion pathway protein D [Escherichia coli MS 200-1] gi|301048227|ref|ZP_07195262.1| general secretion pathway protein D [Escherichia coli MS 185-1] gi|300299921|gb|EFJ56306.1| general secretion pathway protein D [Escherichia coli MS 185-1] gi|300305186|gb|EFJ59706.1| general secretion pathway protein D [Escherichia coli MS 200-1] gi|324005480|gb|EGB74699.1| general secretion pathway protein D [Escherichia coli MS 57-2] gi|324011870|gb|EGB81089.1| general secretion pathway protein D [Escherichia coli MS 60-1] Length = 681 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 454 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 512 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 513 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 570 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 571 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 622 >gi|198283019|ref|YP_002219340.1| type IV pilus secretin PilQ [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665348|ref|YP_002425223.1| fimbrial assembly protein PilQ, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247540|gb|ACH83133.1| type IV pilus secretin PilQ [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517561|gb|ACK78147.1| fimbrial assembly protein PilQ, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 784 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 7/163 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P + + A G + Y+ +SS GAT+V+ + L T Sbjct: 607 LQALQADNRAKIISSPKVLTQDNEKAVIEQGQEIPYQQATSS-GATAVSFKKAVLSLDVT 665 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I L + +P A MPS ++ T + + +G T+V+ G+ D Sbjct: 666 PHISPNGKITLDVDARNDQPNY---AQAMPSGIPINTQQVKTKLLVNNGQTVVIGGIYTD 722 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 Q + G+PLL IP+LG LF++ + +TE+ + TP +V Sbjct: 723 STTQNETGVPLLRDIPLLGWLFKSHINSVAKTELLVFLTPKVV 765 >gi|300973519|ref|ZP_07172233.1| general secretion pathway protein D [Escherichia coli MS 45-1] gi|300410735|gb|EFJ94273.1| general secretion pathway protein D [Escherichia coli MS 45-1] gi|315291309|gb|EFU50669.1| general secretion pathway protein D [Escherichia coli MS 153-1] Length = 681 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 454 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 512 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 513 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 570 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 571 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 622 >gi|91224449|ref|ZP_01259711.1| putative type III secretion protein YscC [Vibrio alginolyticus 12G01] gi|91190791|gb|EAS77058.1| putative type III secretion protein YscC [Vibrio alginolyticus 12G01] Length = 624 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 16/233 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248 + ++ + ++I ++ + L Q+G G S G ++ D V+ G + K Sbjct: 292 QSRIEVALSIVDISANDLSQLGVDWR-AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFK 350 Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +LD + +L LE + + ++ PTL A + K V T A Sbjct: 351 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 410 Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T YG +L P ++ + I L + E + D+PS R + T Sbjct: 411 EEVT--YGTLLRIVPRIVGDRFAARPEINLSLHLEDGAKIADGGVDDLPSVRKTEISTLA 468 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412 + G ++++ G+ +D++ +PLL IP LGALFR N+ R +FI Sbjct: 469 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTKRRTVRMFI 521 >gi|262284505|gb|ACY41042.1| VscC [Vibrio alginolyticus] Length = 624 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 16/233 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248 + ++ + ++I ++ + L Q+G G S G ++ D V+ G + K Sbjct: 292 QSRIEVALSIVDISANDLSQLGVDWR-AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFK 350 Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +LD + +L LE + + ++ PTL A + K V T A Sbjct: 351 SLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETAAL 410 Query: 306 SVTTHDYGVVLHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T YG +L P ++ + I L + E + D+PS R + T Sbjct: 411 EEVT--YGTLLRIVPRIVGDRFAARPEINLSLHLEDGAKIADGGVDDLPSVRKTEISTLA 468 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412 + G ++++ G+ +D++ +PLL IP LGALFR N+ R +FI Sbjct: 469 TVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTKRRTVRMFI 521 >gi|303248632|ref|ZP_07334887.1| type II and III secretion system protein [Desulfovibrio fructosovorans JJ] gi|302489982|gb|EFL49906.1| type II and III secretion system protein [Desulfovibrio fructosovorans JJ] Length = 629 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 18/177 (10%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 E L AL ++ LA PT+T + Q+A F G + T +S G T+V + + Sbjct: 437 LEAQLTALAEDNKVKILASPTITTMENQTA-FVENGMDVPYTSTSQNG-TNVQFANATLR 494 Query: 316 LHFTPTVLSPGRIGLRI-----QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L P V+ + ++I Q + S V G P R+ + + + TIV+ Sbjct: 495 LEILPHVVDGTNLRMKITVKDDQVDTSRTVDG-----NPYIYKRETQSNLVVEDRETIVI 549 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLV--KPVA 423 +GL++D + G+P L IP LG F +NS RE+ IFI TP ++ KP+A Sbjct: 550 SGLVRDTVSDGNSGVPFLRDIPGLGWAFKSKNSSVEREQMLIFI--TPIILKEKPIA 604 >gi|91776807|ref|YP_546563.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91710794|gb|ABE50722.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 723 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 3/163 (1%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F L ALE + ++ P +T + Q A G Q ++ +SS GAT+V + Sbjct: 554 FLLNLELSALETDQRGKIVSSPRVTTANQQKAIIEQGTQIPFQQATSS-GATAVQFKNAS 612 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L TP + +I + + EV + +GV ++PS ++ T V + +G T VL G+ Sbjct: 613 LSLEVTPQITPDEKIIMDL--EVKKDKVGVVFNNVPSIDTQRVQTQVLVANGETAVLGGI 670 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + + + +P +P LG +F+ ++TE+ I TP Sbjct: 671 YEQTERNDVDKVPFFGDLPFLGNVFKRRVKQSDKTELLIFITP 713 >gi|167855583|ref|ZP_02478343.1| type II secretory pathway, component HofQ [Haemophilus parasuis 29755] gi|167853274|gb|EDS24528.1| type II secretory pathway, component HofQ [Haemophilus parasuis 29755] Length = 420 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 5/170 (2%) Query: 259 VLH----ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 VLH ALE I +A P L + AS G + Y S T + + + Sbjct: 246 VLHLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKKKEITDIEFREAVL 305 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L TP + +I L + + P +N M + ++ +T V G TIVL G+ Sbjct: 306 GLEVTPHISKQNQILLDLAISQNSPNNQMN-NMMATIDKQEINTQVLAKHGETIVLGGIF 364 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + I + ++ +PLL IP++ LF +R + E+ I TP++VK M Sbjct: 365 QHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKRELVIFVTPYIVKSEKM 414 >gi|18139873|gb|AAL60184.1|AF426313_4 hypothetical type II secretion protein GspD [Escherichia coli] Length = 616 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 389 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 447 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 448 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 505 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 506 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 557 >gi|126643202|ref|YP_001086186.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii ATCC 17978] Length = 695 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 11/179 (6%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311 F + L AL+ ++ P + Q+A +G Q Y++ ++S ++ TT D Sbjct: 521 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKD 580 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367 + L+ TP++ G+I +++ ++S+ + AG P+ + +T V + +G T Sbjct: 581 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 635 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++L G+ + + +P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 636 VILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 694 >gi|82778251|ref|YP_404600.1| putative type II secretion protein [Shigella dysenteriae Sd197] gi|81242399|gb|ABB63109.1| putative type II secretion protein [Shigella dysenteriae Sd197] Length = 611 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 384 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 442 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 443 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 500 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 501 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 552 >gi|47155035|emb|CAE85234.1| GspD, hypothetical type II secretion protein [Escherichia coli] Length = 616 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 389 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 447 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 448 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 505 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 506 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMV-----FIRPTILRD 557 >gi|307721768|ref|YP_003892908.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] gi|306979861|gb|ADN09896.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] Length = 565 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 85/377 (22%), Positives = 160/377 (42%), Gaps = 44/377 (11%) Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 D V + +FGK G ++++I D + N + + ++ +++ + I + N+R Sbjct: 52 DAVSAKGTLLKIFGKKTGNTSILVIYTDN-SIQNYHVYVNENLGYIQKMIN--IIEPNLR 108 Query: 138 VEMV-SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ- 195 + V +D+ V+ G+ + D +R E+ L + G N ++K+M+L ++ Sbjct: 109 LSKVGNDSTVIAGVFKDPHDKKRIYEI----LQKGGIN------TEKLMDLTKTQKVNKM 158 Query: 196 VTLKVTIAEVRRDILKQIG------FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247 + K+ + V K +G F + +++ + + +A F G + G+F+ Sbjct: 159 IRTKLYLIAVDNQKAKDLGGVTGLSFFNKYVNATANAAAANSATFSGFLLDNLGNFTTST 218 Query: 248 -KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGAT 305 VL +F L+ L + L ++A+F GG+ T ++ + G Sbjct: 219 GNSVLATLNF------LQTKGITNILDDTVLITTEDKNATFRVGGELYIPTGITQNVGTA 272 Query: 306 ---SVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA--GD---MPSYRVR 354 V +YG+ L T + I + IQ + I N GD +PS+ + Sbjct: 273 PTIQVEAKEYGLKLTLTSKFMQTNGYMHINVDIQDSAIDANIAHNVSLGDGISIPSFVSK 332 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T V + S I L G L + + +E +PL IPILG LF++ N T++ Sbjct: 333 NIKTNVVVKSEQVIALGGRLHSENSKSEEKVPLFGDIPILGELFKHKIENLGTTDLIFLL 392 Query: 415 TPFLVKPVAMRDLSRPD 431 P +V A D+ D Sbjct: 393 VPEIVD--ANEDIDDTD 407 >gi|15603090|ref|NP_246162.1| ComE [Pasteurella multocida subsp. multocida str. Pm70] gi|12721580|gb|AAK03309.1| ComE [Pasteurella multocida subsp. multocida str. Pm70] Length = 444 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 4/165 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER I +A P L + +SAS G + Y + SV + + L T Sbjct: 262 LTALEREKHIEIIASPRLLTTNKKSASIKQGTEIPYVMKRGKDKSESVEFREAVLGLDVT 321 Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + I L + Q + PV+ + G++ S ++ +T V G TIVL G+ D Sbjct: 322 PHISKDNTILLDLLITQNTLGAPVV-YDKGEIVSIDKQEINTQVVAQDGETIVLGGVFHD 380 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +PLL +P+L +F ++ E+ I TP ++KP Sbjct: 381 TMTKGVNKVPLLGDLPLLKHVFSQKTERHQKRELVIFVTPHIIKP 425 >gi|283786644|ref|YP_003366509.1| T3SS structural protein EscC [Citrobacter rodentium ICC168] gi|15723915|gb|AAL06362.1|AF311901_14 EscC [Citrobacter rodentium] gi|282950098|emb|CBG89732.1| T3SS structural protein EscC [Citrobacter rodentium ICC168] Length = 512 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 39/227 (17%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----AADFGGKFVSEGGDFSVKG 249 Q+ + V+I +V + L+Q+G S T ++ S +F A+ +S +F ++ Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQSSIAFNSSAAQANISSSVISNASNFMIR- 333 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307 ++AL++ + + L++P++ ++ A Y VS A+ S+ Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382 Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQ---TEVSEPVIGVNAGDM-PSY 351 T+ G +L TP +L R+ L IQ V++ I NAG + P Sbjct: 383 TS---GTLLRVTPRILDDTSNSLTGKRRERVRLLLDIQDGNQSVNQSNIQ-NAGSLLPEV 438 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + + T L +G +++L G ++D K+GIPLLS IP++G+LF Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485 >gi|148874|gb|AAA24947.1| ORF 1 [Haemophilus influenzae] Length = 371 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + +SAS G + Y ++ SV + + L T Sbjct: 193 LSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVT 252 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I L + + P V G ++ S ++ +T V G TIVL G+ D Sbjct: 253 PHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 312 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + ++ +PLL IP++ LF ++ E+ I TP ++K Sbjct: 313 ITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILK 355 >gi|90580158|ref|ZP_01235965.1| MSHA biogenesis protein MshL [Vibrio angustum S14] gi|90438460|gb|EAS63644.1| MSHA biogenesis protein MshL [Vibrio angustum S14] Length = 548 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 29/214 (13%) Query: 235 GGKFVSE--GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 GG +SE GG ++K + +F V+ L + L+ P +TA + Q A GG Sbjct: 320 GGNAISELLGGQTNIK--ITDGNFSAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGD 377 Query: 293 HLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----S 337 + T SS+ + S+T G+ L TP + G + L + V Sbjct: 378 EYFVTDVSSSNVSGDNNNVSPDVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVQNE 437 Query: 338 EPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + I V + +R++D+ + +G +V+ GL+K I +P L IP Sbjct: 438 QKTIEVGTAKPMVLPLAKSTIRESDSIIHARTGDVVVIGGLMKSSINDQVSKVPFLGDIP 497 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +G LFR+ +++TE+ I L+KP + D Sbjct: 498 GIGNLFRHINKVKKKTELVI-----LLKPTVVTD 526 >gi|332851353|ref|ZP_08433405.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013150] gi|332868764|ref|ZP_08438387.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013113] gi|332730069|gb|EGJ61397.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013150] gi|332733193|gb|EGJ64390.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013113] Length = 712 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 11/179 (6%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311 F + L AL+ ++ P + Q+A +G Q Y++ ++S ++ TT D Sbjct: 538 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKD 597 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367 + L+ TP++ G+I +++ ++S+ + AG P+ + +T V + +G T Sbjct: 598 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 652 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++L G+ + + +P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 653 VILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 711 >gi|319944026|ref|ZP_08018306.1| type II and III secretion system protein [Lautropia mirabilis ATCC 51599] gi|319742787|gb|EFV95194.1| type II and III secretion system protein [Lautropia mirabilis ATCC 51599] Length = 837 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 104/263 (39%), Gaps = 42/263 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--FSVK---- 248 QV ++ I EV+ D + ++G Q S G + GG S GG SV Sbjct: 419 QVYIESLIVEVKADTVSEMGIQWQFGTSRPGQNSVV----GGTNFSSGGSNILSVTQNPA 474 Query: 249 ----------GVLDR---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 GV+ + + ALE T A P L + + A Sbjct: 475 ALAAAGGLNVGVVRNGVSLFGQTFLNLGLLARALEAETNSNIRATPNLLTLDNEEARIII 534 Query: 290 G-------GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 G GQ+ + S+ ++ D G +L P V G + + I E+S V Sbjct: 535 GQNVPFVTGQYATTNNTLSSPFQTIERKDVGTMLRVRPQVSEGGTVKMEIAQEISAVVDT 594 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + + R R D+ V + G +VL GL++D ++ +PLL IP LG LFR Sbjct: 595 TQSAGIITNR-RAIDSNVLVDDGQIVVLGGLIEDTVEGGISKVPLLGDIPGLGRLFRYDN 653 Query: 403 FNREETEIFIAATPFLVKPVAMR 425 R +T + I ++PV +R Sbjct: 654 RKRVKTNLLI-----FLRPVVLR 671 >gi|241759496|ref|ZP_04757600.1| fimbrial assembly protein PilQ [Neisseria flavescens SK114] gi|241320278|gb|EER56611.1| fimbrial assembly protein PilQ [Neisseria flavescens SK114] Length = 710 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + A E +T++ P + + A SG + Y+ SSS GATS+T + L T Sbjct: 542 ISASEEQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEASSS-GATSITFKKAVLGLTVT 600 Query: 320 PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G+I + ++ P+ V++ + +T + GGT+++ G+ +++ Sbjct: 601 PNITPDGQIIMTVKINRDTPIDCTVDSLMTKCINTKHLNTQAMVEDGGTLIVGGIYEEES 660 Query: 379 QQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLVKPV 422 +P+L IP++G LF R R NR E IFI TP ++ V Sbjct: 661 TNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFI--TPRIMDNV 704 >gi|169794485|ref|YP_001712278.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii AYE] gi|213158943|ref|YP_002320941.1| fimbrial assembly protein PilQ [Acinetobacter baumannii AB0057] gi|215482074|ref|YP_002324256.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB307-0294] gi|301345422|ref|ZP_07226163.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB056] gi|301510068|ref|ZP_07235305.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB058] gi|301595996|ref|ZP_07241004.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB059] gi|169147412|emb|CAM85273.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii AYE] gi|213058103|gb|ACJ43005.1| fimbrial assembly protein PilQ [Acinetobacter baumannii AB0057] gi|213988167|gb|ACJ58466.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB307-0294] Length = 721 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 11/179 (6%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311 F + L AL+ ++ P + Q+A +G Q Y++ ++S ++ TT D Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKD 606 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367 + L+ TP++ G+I +++ ++S+ + AG P+ + +T V + +G T Sbjct: 607 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 661 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++L G+ + + +P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 662 VILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720 >gi|90414685|ref|ZP_01222656.1| putative type II secretory pathway, component EpsD [Photobacterium profundum 3TCK] gi|90324227|gb|EAS40802.1| putative type II secretory pathway, component EpsD [Photobacterium profundum 3TCK] Length = 670 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 90/181 (49%), Gaps = 21/181 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD---- 311 + +++A+ + L+ P++T + ASF G + V TG+TS +++D Sbjct: 440 WTMLVNAVATDSNSNILSSPSITVMDNGEASFIVG-----EEVPVVTGSTSSSSNDNPFQ 494 Query: 312 ------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L+ TP + + L+I+ EVS V+G + + R+ +T+V + G Sbjct: 495 TVERKEVGIKLNVTPQINEGDSVQLKIEQEVSS-VLGASGAVDVRFAKRQINTSVLVQDG 553 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 I L GL+ ++ ++ + +P+L IP LG LF+++ +T + + +KP +R Sbjct: 554 QMIALGGLISEETKESESKVPILGDIPFLGFLFKSTNTTTAKTNLMV-----FIKPTIIR 608 Query: 426 D 426 D Sbjct: 609 D 609 >gi|193078561|gb|ABO13584.2| putative outer membrane protein (ComQ) [Acinetobacter baumannii ATCC 17978] Length = 721 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 11/179 (6%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311 F + L AL+ ++ P + Q+A +G Q Y++ ++S ++ TT D Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKD 606 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367 + L+ TP++ G+I +++ ++S+ + AG P+ + +T V + +G T Sbjct: 607 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 661 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++L G+ + + +P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 662 VILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720 >gi|78484595|ref|YP_390520.1| type II and III secretion system protein [Thiomicrospira crunogena XCL-2] gi|78362881|gb|ABB40846.1| Type II secretion pathway protein D [Thiomicrospira crunogena XCL-2] Length = 703 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 20/218 (9%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 +I G++ P+ A G + G+ S G + ++ AL + L+ PTL Sbjct: 399 TIIGNAGNPAAQANA-IGTGVNAAFGEVSADGT----GWGALIRALNSDSEANILSTPTL 453 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRI 328 + + A G + ++T S ++ ++ + G+ L TP + + Sbjct: 454 LTLDNEEAEIVVGKEVPFQTGSYTSTGTSSTPTNPFNTIERKNVGLSLKVTPQINEGDEV 513 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I E+S+ + +A D+ + + R+ T V + G IVL GLL + ++++ +P L Sbjct: 514 FLEINQEISDVIPKGDAVDVQTSK-RQIKTRVIVGDGNVIVLGGLLTEKETEVEKKVPGL 572 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IP LGALFR++ RE+ + + ++PV +RD Sbjct: 573 GDIPGLGALFRSTSNEREKVNLMV-----FLRPVIVRD 605 >gi|152986624|ref|YP_001348780.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] gi|150961782|gb|ABR83807.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] Length = 758 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 24/248 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------ADFGGKFVSEGG 243 Q+ ++ I E+ ++ + +G Q ++ G + SFA A GK +E Sbjct: 341 QLLVEAAIVELTGELNEALGVQWAMRGGHAVGGTSFAGSGLSIGTLLGALQSGKPPAELP 400 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 D ++ G+ R F ++ AL R + L+ P+L + Q A G ++T S +T Sbjct: 401 DGAIVGLGSR-DFGALITALTRNSNSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTTN 459 Query: 304 A-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352 + T+V D GV L TP + + L I+ E+S + D+ + + Sbjct: 460 SEGSSNPFTTVERKDIGVTLKVTPHIGDDRMLRLEIEQEISSIAPAATLAAKTVDLVTNK 519 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +TV G IVL GL++DD+ + +PLL IP +G LFR++R R + + + Sbjct: 520 -RSIKSTVLADDGQVIVLGGLIQDDVVRSDSRVPLLGDIPGVGRLFRSTRDTRVKRNLMV 578 Query: 413 AATPFLVK 420 P +V+ Sbjct: 579 FLRPSIVR 586 >gi|260556918|ref|ZP_05829135.1| general secretion pathway protein D [Acinetobacter baumannii ATCC 19606] gi|260409524|gb|EEX02825.1| general secretion pathway protein D [Acinetobacter baumannii ATCC 19606] Length = 721 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 11/179 (6%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311 F + L AL+ ++ P + Q+A +G Q Y++ ++S ++ TT D Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKD 606 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367 + L+ TP++ G+I +++ ++S+ + AG P+ + +T V + +G T Sbjct: 607 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 661 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++L G+ + + +P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 662 VILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720 >gi|297581573|ref|ZP_06943496.1| general secretion pathway protein D [Vibrio cholerae RC385] gi|297534411|gb|EFH73249.1| general secretion pathway protein D [Vibrio cholerae RC385] Length = 674 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 13/156 (8%) Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330 +T + ASF G + + SS G+ +V + G+ L P + + L Sbjct: 464 ITVMDNGEASFIVG-EEVPVITGSSAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQL 522 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 +I+ EVS V+G N + R+ +T+V + G +VL GL+ + + + +PLL Sbjct: 523 KIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGD 581 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IP+LG LFR++ E+ + + +KP +RD Sbjct: 582 IPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIRD 612 >gi|332873777|ref|ZP_08441719.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6014059] gi|332738000|gb|EGJ68885.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6014059] Length = 712 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 11/179 (6%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311 F + L AL+ ++ P + Q+A +G Q Y++ ++S ++ TT D Sbjct: 538 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKD 597 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367 + L+ TP++ G+I +++ ++S+ + AG P+ + +T V + +G T Sbjct: 598 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 652 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++L G+ + + +P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 653 VILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 711 >gi|238787297|ref|ZP_04631096.1| General secretion pathway protein D [Yersinia frederiksenii ATCC 33641] gi|238724559|gb|EEQ16200.1| General secretion pathway protein D [Yersinia frederiksenii ATCC 33641] Length = 657 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 15/199 (7%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTH 310 +++ + AL LA P++ + A F G + +T ++ S++ Sbjct: 424 NWDGLFTALATNLNNNILATPSIVTLDNMEAEFNVGQEVPILTSTQTTTTDKVYNSISRQ 483 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGGT 367 GV+L P + + L I+ EVS +N ++ S + R + V + SG T Sbjct: 484 SVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDINTHNLGSVFNKRIVNNAVLVKSGET 543 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +V+ GLL + + +PLL IP +GALFR S+ E++ + + +KP +R+ Sbjct: 544 VVVGGLLDKKVNKTINKVPLLGDIPFIGALFRQSKEKVEKSNLIL-----FIKPTILRET 598 Query: 428 SRPDDHYSVEDDAKAFFFN 446 S D+ V D + N Sbjct: 599 S---DYTQVTTDKYTAYNN 614 >gi|184159708|ref|YP_001848047.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii ACICU] gi|239501963|ref|ZP_04661273.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii AB900] gi|183211302|gb|ACC58700.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii ACICU] gi|322509621|gb|ADX05075.1| HofQ [Acinetobacter baumannii 1656-2] gi|323519639|gb|ADX94020.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii TCDC-AB0715] Length = 721 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 11/179 (6%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311 F + L AL+ ++ P + Q+A +G Q Y++ ++S ++ TT D Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKD 606 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367 + L+ TP++ G+I +++ ++S+ + AG P+ + +T V + +G T Sbjct: 607 ALLSLNVTPSITPDGKIQMKL--DISKDSV---AGAAPNGELILNKNNINTNVLVDNGET 661 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++L G+ + + +P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 662 VILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720 >gi|229521807|ref|ZP_04411225.1| general secretion pathway protein D [Vibrio cholerae TM 11079-80] gi|229341401|gb|EEO06405.1| general secretion pathway protein D [Vibrio cholerae TM 11079-80] Length = 674 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 13/156 (8%) Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330 +T + ASF G + + SS G+ +V + G+ L P + + L Sbjct: 464 ITVMDNGEASFIVG-EEVPVITGSSAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQL 522 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 +I+ EVS V+G N + R+ +T+V + G +VL GL+ + + + +PLL Sbjct: 523 KIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGD 581 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IP+LG LFR++ E+ + + +KP +RD Sbjct: 582 IPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIRD 612 >gi|157377398|ref|YP_001475998.1| type IV pilus secretin PilQ [Shewanella sediminis HAW-EB3] gi|157319772|gb|ABV38870.1| type IV pilus secretin PilQ [Shewanella sediminis HAW-EB3] Length = 682 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 3/177 (1%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + D + L ALE+ +A P + S Q A++ G + +SS+GA Sbjct: 503 FHVAKLADGTVLDMELSALEKEDKGEIIASPRIMT-SNQKAAYIEQGVEIPYLEASSSGA 561 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 +++ + L TP + R+ L I + V+ G S ++ T V + Sbjct: 562 ATISFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKVVATPLGSAVSIDTQRIGTQVLV 621 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G TIVL G+ + + +P+L IP +G LFR++ E+ I TP ++ Sbjct: 622 DHGETIVLGGIYQQQLINRVSKVPVLGDIPFVGFLFRSTTDENNRQELLIFVTPKII 678 >gi|209518484|ref|ZP_03267306.1| type II and III secretion system protein [Burkholderia sp. H160] gi|209501117|gb|EEA01151.1| type II and III secretion system protein [Burkholderia sp. H160] Length = 684 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 28/251 (11%) Query: 190 IAGED----QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GD 244 IA +D +V L+V + EV D L +G + + S PS D G+ Sbjct: 336 IAAQDLPDPEVILEVKVLEVSHDRLTDLGIAWPNSFTVSTPS---TVDTWGELHHLPINA 392 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTV 298 +V G+ +F+ T LA P++ A + + A G + + Sbjct: 393 LNVSGLSATANFKLT------DTDANLLASPSIRARNKEKARILIGDKVPVISSSSTPST 446 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------YR 352 S + A ++ D G+ L P V +G+++ EVS +++ + + Y Sbjct: 447 SGPSYAQTIQYLDVGIKLEVEPQVYRDADVGMKLNLEVSNITNTISSSNSTTGLTSLAYE 506 Query: 353 V--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R A T++ + G + +L GL++D+ + + +P L ++P+LG LF N + ++TEI Sbjct: 507 IGTRSASTSLRVHDGESQILGGLIQDEDRLTADKVPGLGQLPVLGRLFSNHNGDHKKTEI 566 Query: 411 FIAATPFLVKP 421 + TP +V+P Sbjct: 567 VLEITPHIVRP 577 >gi|138046|sp|P03666|G4P_BPF1 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|14983|emb|CAA23875.1| unnamed protein product [Enterobacteria phage f1] Length = 426 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S GG F G+ + + AL+ + + L+ P + +SGQ S S GQ++ Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSI-SVGQNVPFITG 296 Query: 300 SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 TG + +V + G+ + P ++ G I L I ++ A D+ + Sbjct: 297 RVTGESANVNNPFQTVERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN 356 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R TTV L G T++L GL G+P LSKIP++G LF + + EE+ ++ Sbjct: 357 Q-RSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLY 415 Query: 412 IAATPFLVKPVAMRDL 427 + LVK +R L Sbjct: 416 V-----LVKATIVRAL 426 >gi|308271769|emb|CBX28377.1| hypothetical protein N47_G37010 [uncultured Desulfobacterium sp.] Length = 526 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 9/206 (4%) Query: 221 GSSSGPSKSFAADFGGKF--VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 GS+S S+ F +F + G + G + E L AL+ + L+ P++T Sbjct: 309 GSTSLSSQGFGINFPASMSDAASGTLGLMFGTIGGNILEMQLSALQNNGKLNILSSPSIT 368 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + Q+A +T G+ + V+ TG T SV D + L P V+ + + + Sbjct: 369 TLDNQTA-YTENGERI-PYVTEETGTTGSITKSVKFEDVVLRLEIKPHVIDSKNLKMEVL 426 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + +E N P ++ TT+ + +G TIV++GL K Q + +P+L +P+ Sbjct: 427 VKKNEVDNSRNVLGNPYIIKKETKTTLIVKNGETIVISGLTKQKKQDSENSVPVLRDMPL 486 Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419 G +F+ + ++ E+ I TP ++ Sbjct: 487 FGRMFKGTGKSKSMEEVLIFITPTIL 512 >gi|146328722|ref|YP_001209267.1| type IV fimbrial pore PilQ [Dichelobacter nodosus VCS1703A] gi|146232192|gb|ABQ13170.1| type IV fimbrial pore PilQ [Dichelobacter nodosus VCS1703A] Length = 734 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 15/167 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ ++ P + G A SG + Y T+ G+ + + L T Sbjct: 560 LQALQNEGRSEVISSPRVVTQDGNQAKVMSGQEIPYSTLDDK-GSVQTDYKEALLSLEVT 618 Query: 320 PTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 P V R+ + I+ + SE V+G P+ +T VE+ +G TIVL G+ Sbjct: 619 PRVTPNDRVNMEIEIKKDRVNWSEQVLG-----QPAIDKNLLNTKVEVANGETIVLGGIY 673 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFLV 419 + + + +PLL IP++G +F+N+ +F + E IFI TP ++ Sbjct: 674 EQEQSLSENKVPLLGDIPVVGNVFKNTNKKFTKNELLIFI--TPRVI 718 >gi|138047|sp|P03664|G4P_BPFD RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|8489183|gb|AAF75602.1|AF217317_5 morphogenetic protein IV [Filamentous phage cloning vector fd-tet] gi|215404|gb|AAA32312.1| IV [Enterobacteria phage fd] gi|8698959|gb|AAF78531.1| protein IV [Filamentous phage display vector fMCS1] gi|21667075|gb|AAM73892.1| morphogenetic protein IV [Filamentous phage display vector f8-5] gi|21667089|gb|AAM73904.1| morphogenetic protein IV [Filamentous phage display vector c8-4] gi|223541|prf||0812197E DNA,phage Length = 426 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S GG F G+ + + AL+ + + L+ P + +SGQ S S GQ++ Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSI-SVGQNVPFITG 296 Query: 300 SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 TG + +V + G+ + P ++ G I L I ++ A D+ + Sbjct: 297 RVTGESANVNNPFQTVERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN 356 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R TTV L G T++L GL G+P LSKIP++G LF + + EE+ ++ Sbjct: 357 Q-RSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLY 415 Query: 412 IAATPFLVKPVAMRDL 427 + LVK +R L Sbjct: 416 V-----LVKATIVRAL 426 >gi|85711535|ref|ZP_01042593.1| Type II secretory pathway, component PulJ [Idiomarina baltica OS145] gi|85694687|gb|EAQ32627.1| Type II secretory pathway, component PulJ [Idiomarina baltica OS145] Length = 404 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 18/196 (9%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A G+ + G S +G+L + L A+E+ +A P + + Q A G Sbjct: 216 AVPAAGRLKANVGKLS-EGLL----LDLELSAMEQDNEAEIIARPKIFTSNQQPAYIEQG 270 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDM 348 + Y S+++GAT+V + L TP + S + L I + G Sbjct: 271 TEFPY-VESAASGATAVKFKKAVMGLRVTPQITSNDYVMLDLTITQNTRGDTVSTPTGPA 329 Query: 349 PSYRVRKADTTVELPSGGTIVLAGL-----LKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + ++ T V + SG TIVL G+ LKDD G+P+LS +P +G LF+N R Sbjct: 330 VAIDTQEMATRVLVKSGETIVLGGIFQQYELKDDT-----GVPILSSLPFVGNLFKNQRE 384 Query: 404 NREETEIFIAATPFLV 419 E+ E+ I TP L+ Sbjct: 385 QSEKRELVIFVTPTLL 400 >gi|192359937|ref|YP_001980940.1| fimbrial assembly protein PilQ [Cellvibrio japonicus Ueda107] gi|190686102|gb|ACE83780.1| fimbrial assembly protein PilQ [Cellvibrio japonicus Ueda107] Length = 714 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 4/179 (2%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G +V + D + L ALE + +++P + Q A SG + Y+ S S Sbjct: 533 AGSIAVGVLTDSVFLDMELSALETSGYAEIVSQPKVITSDKQKAVIKSGKEIAYQETSPS 592 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTV 360 G T+ + ++L P + RI + + V++ +G + +PS V + T V Sbjct: 593 -GGTTTGFKEAVLMLEVVPQITPDNRIIMDLF--VTKDSVGEITQQGVPSLDVTRLQTKV 649 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T+VL G+ + + + +P+L IP LG LF+ + N+ +TE+ I TP L+ Sbjct: 650 LVNNGQTVVLGGVFSLESTKGESKVPVLGDIPYLGRLFKRTVDNQFKTELLIFVTPKLI 708 >gi|62185517|ref|YP_220302.1| general secretion pathway protein D [Chlamydophila abortus S26/3] gi|62148584|emb|CAH64356.1| probable general secretion pathway protein D [Chlamydophila abortus S26/3] Length = 753 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 23/219 (10%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SP 325 +R A P++ ++ Q+ + + + + VS+ YG+++ P + Sbjct: 537 VRINASPSVVTMN-QTPARIAIVEEMSIAVSADKEKAQYNRAQYGIMIKMLPVINVGDED 595 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G+ + ++T+++ G NA + P R V +P G T+++ GL ++GI Sbjct: 596 GKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVIIGGLRCKHASDSQDGI 655 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKPVAMRDL-------SRPDDH---- 433 P L +IP +G LF + +TE+F+ TP L P+ ++ SRP ++ Sbjct: 656 PFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILDNPIEKKERHEEAILSSRPGENTEFR 715 Query: 434 ---YSVEDDAKAFF--FNRVNKIYGPKEASEVEGQNYKG 467 ++ E+ AKA ++ I P AS+V+G Y G Sbjct: 716 QALFAGEEAAKAAHKKLEFISAIELP--ASQVQGLEYDG 752 >gi|11991134|gb|AAG42220.1| unknown [Shewanella putrefaciens 200] Length = 258 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 12/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310 F ++ A+ T LA P +T + Q ASF G + T S+++ S V Sbjct: 10 FGALIQAVSSDTNSNVLATPXITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERK 69 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + GV L P + + L I+ EVS + N G S+ R+ TTV SG +VL Sbjct: 70 EVGVKLKVVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVL 127 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ + +Q+ + + L IP+LG L + + + I +KP +RD Sbjct: 128 GGLINEXVQESVQKVLSLGDIPVLGHLSNLPPVXKTKKNLMI-----FIKPTIIRD 178 >gi|187479017|ref|YP_787041.1| type IV pilus assembly protein (partial) [Bordetella avium 197N] gi|115423603|emb|CAJ50142.1| putative type IV pilus assembly protein (partial) [Bordetella avium 197N] Length = 117 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 47/76 (61%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P R RKADT VEL G +++GL+ + IPLL +PI+G+ FR+ ++++E+ Sbjct: 2 IPVLRKRKADTMVELGDGEGFMISGLVSRQTKASVNKIPLLGDLPIIGSFFRSVQYSQED 61 Query: 408 TEIFIAATPFLVKPVA 423 E+ I P L +P+A Sbjct: 62 NELVIVVPPRLRQPIA 77 >gi|254442891|ref|ZP_05056367.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] gi|198257199|gb|EDY81507.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] Length = 842 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 87/218 (39%), Gaps = 42/218 (19%) Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302 +V G ++ + + AL + + L+ P +T +SG A + Y T S T Sbjct: 591 NVIGNINSVNLNVAIRALSQQSGSDLLSAPKVTVLSGNEAKINVSQEFRYPTRYSDTESD 650 Query: 303 ----------GATSVT----------THDYGVVLHFTPTV----------LSPGRIGLRI 332 G+ VT T + GV L TP V L+P Sbjct: 651 VGSTSGSLTGGSAGVTITPGTPEDFVTRNVGVELAVTPIVEEDDYSITLDLNPRVTEFEG 710 Query: 333 QTEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 E P I ++ G P + VR+ +T V + G T+V+ G+ ++D+ + + Sbjct: 711 FVEYGGPSIAISGGRTVKTPSGFYQPIFAVREVETKVTIWDGATVVMGGMTREDVVTVND 770 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 IP L IP +G LFR+ + + + I T LV P Sbjct: 771 KIPFLGDIPFVGRLFRSEGESSAKRNLLIFVTANLVSP 808 >gi|78186891|ref|YP_374934.1| Type II secretory pathway component PulD-like [Chlorobium luteolum DSM 273] gi|78166793|gb|ABB23891.1| Type II secretory pathway component PulD-like protein [Chlorobium luteolum DSM 273] Length = 588 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 10/160 (6%) Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-DYGVVLHFTPTVLS 324 ++ I +A PTLT + + F SG Q + V+ S ++ ++ + + GV +H P ++ Sbjct: 346 SSKIDVIARPTLTGMLNIDSEFFSGNQ-IDAAVAGSADSSPISINKEIGVTMHVRPNEIT 404 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRV------RKADTTVELPSGGTIVLAGLLKDDI 378 ++ L + EVS + D +Y+ K T V++ G T++L+GL + + Sbjct: 405 RNKVKLHV--EVSRSFLDTTDKDKITYQYMVTTSNTKVTTDVDIAFGETMILSGLYEREA 462 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 ++G+P+L IP+L LF + + I TP++ Sbjct: 463 VDTRDGVPILQDIPLLQYLFSKKTERLFQRSVIILLTPYI 502 >gi|158521058|ref|YP_001528928.1| general secretion pathway protein D [Desulfococcus oleovorans Hxd3] gi|158509884|gb|ABW66851.1| general secretion pathway protein D [Desulfococcus oleovorans Hxd3] Length = 799 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 5/179 (2%) Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSST 302 V G ++ + V+ A ++ ++ L+ P + Q A+ T G Y T SS Sbjct: 480 VVGGIEYPNLAAVVRAFKKDKDVQILSTPQIMTTDNQEATITVGKNIPYLTKIGTTSSEE 539 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVE 361 ++ D G+ L P + I L I+ E+++ + + D P+ R T V Sbjct: 540 TYSNYEYKDVGISLKIKPQINENRLIRLDIEQELTKLDQLTTVSLDRPATLKRGITTNVI 599 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + TIV+ GL+ D + +++ +P L IP LG LF+ + E+T + + TP ++K Sbjct: 600 VHDEHTIVIGGLIDDSMSRVEYKVPCLGDIPFLGWLFKGLSRSSEKTNLLVFLTPHVIK 658 >gi|253995615|ref|YP_003047679.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera mobilis JLW8] gi|253982294|gb|ACT47152.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera mobilis JLW8] Length = 610 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/268 (25%), Positives = 110/268 (41%), Gaps = 44/268 (16%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGK----------FVSEGG 243 QV ++ TI EVR Q G S + S+S F G + F + Sbjct: 312 QVLIEATIVEVRLSDSFQAGIDWSRLNNSASNSGFQFRQQLGAQTNGINATGNTFTTTAN 371 Query: 244 DFSVK-------GVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 F V G L+ S ++ LE+ + + L+ P L ++ Q+A Sbjct: 372 AFGVATNAGFVAGYLNPVSKIGNIAASINLLEQFGSTKVLSSPKLMVLNNQTAVLKVVDN 431 Query: 293 HLYKTVSSSTGATSV------------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 +Y TV S SV T GVV+ TP + + + I+ VS V Sbjct: 432 LVYFTVQSQQSQGSVGGGILSTVTTTPNTVPVGVVMSVTPQINDLSNVNINIRPTVSR-V 490 Query: 341 IGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 +G +P +VR+ ++ +++ SG T VL GL++DD+ + +P LSK+ Sbjct: 491 LGFKKDPNPNLTVESLVPEIQVREMESMLQILSGNTAVLGGLMQDDVLTNTDKVPGLSKV 550 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P +G +F +TE+ I P ++ Sbjct: 551 PGVGKVFTGQNDANRKTELVIFLRPTVI 578 >gi|299065464|emb|CBJ36633.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CMR15] Length = 714 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 3/157 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ +SS GATSV+ + L T Sbjct: 551 LSALEADGRGKIISSPRVVTADNIKALIEQGTEVPYQQATSS-GATSVSFKKANLKLEVT 609 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ +G + + + T V + +GGT+V+ G+ + + Sbjct: 610 PKITPDGNVFLDV--DVNKDSLGTQTTNGFAINTKHVQTQVLVENGGTVVIGGIYTQNER 667 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 IPLL IP+LG LF+++ + TE+ + TP Sbjct: 668 TDVNKIPLLGDIPVLGNLFKSTAKTNDRTELLVFLTP 704 >gi|293416358|ref|ZP_06658997.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B185] gi|291431714|gb|EFF04697.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B185] Length = 566 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 25/259 (9%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ LL++A + V L + I ++ ++ L+Q+G G S+ S VS Sbjct: 296 LVRLLDVA-KRHVELSLWIIDLNKNDLEQLGVAW---GGSTSFSNKLDIALNQTLVS--- 348 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 LD F ++ALE+ R +++P L A F + K + Sbjct: 349 ------TLDGVHFLASVYALEKKNQARIVSKPVLMTQENVPAIFDNNRTFYTKLIGERNS 402 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ----TEVSEPVIGVNAGDMPSYRVRKADTT 359 + + T YG ++ P + G I + + E + V G +P T Sbjct: 403 SLAHVT--YGTMISVLPRFSADGEIEMSLNIEDGNEEKQSVSGNEDSVLPEVGRTHISTV 460 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P G ++++ G +D + + IPLL IP++G LFR N+ FL+ Sbjct: 461 ARVPQGKSLLIGGYTRDSRTKDVQKIPLLGDIPLIGGLFRYENQNQNNV-----VRVFLI 515 Query: 420 KPVAMRDLSRPD-DHYSVE 437 +P + D PD D ++ E Sbjct: 516 QPKEILDPLMPDADVFAAE 534 >gi|94500719|ref|ZP_01307248.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65] gi|94427041|gb|EAT12022.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65] Length = 640 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 105/251 (41%), Gaps = 30/251 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF----------------GGKF 238 QV ++ I EV + ++G Q + +G + A DF G Sbjct: 353 QVLIEAAIVEVTGQVDDRVGVQTAALDQETGETPLVATDFANAGTSISQLITGIATGQPA 412 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA--------ISGQSASFTSG 290 +S G G F ++ ALE + L+ P++ I GQ+ F +G Sbjct: 413 ISSGLTLGGVGQNGDTEFAFLVQALESVSNANLLSTPSIMTMDNHEAEIIVGQNVPFVTG 472 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDM 348 + S+S T++ D G L TP V + L ++ TE P D+ Sbjct: 473 ---STSSTSNSNPFTTIKREDIGTTLKVTPHVQDGKFVRLSVEQSTESVAPTAVEGQADL 529 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + + R T + +G ++L GL++D +Q+ + +P L IPI+G LFR++ +R + Sbjct: 530 ITNK-RSIQTQILAENGEIVMLGGLIRDAVQESESKVPFLGDIPIIGWLFRSTSESRVKQ 588 Query: 409 EIFIAATPFLV 419 + + P +V Sbjct: 589 NLIVFLKPTVV 599 >gi|17426227|ref|NP_510894.1| phage assembly protein [Enterobacteria phage M13] gi|138050|sp|P03665|G4P_BPM13 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|14969|emb|CAA23865.1| phage assembly protein [Enterobacteria phage M13] Length = 426 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S GG F G+ + + AL+ + + L+ P + +SGQ S S GQ++ Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSI-SVGQNVPFITG 296 Query: 300 SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 TG + ++ + G+ + P ++ G I L I ++ A D+ + Sbjct: 297 RVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN 356 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R TTV L G T++L GL G+P LSKIP++G LF + + EE+ ++ Sbjct: 357 Q-RSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLY 415 Query: 412 IAATPFLVKPVAMRDL 427 + LVK +R L Sbjct: 416 V-----LVKATIVRAL 426 >gi|171060554|ref|YP_001792903.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] gi|170777999|gb|ACB36138.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] Length = 760 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 34/252 (13%) Query: 190 IAGED----QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 IA +D +V L++ I EV R ++ +G + +GP S A F E G+ Sbjct: 320 IAAQDKADPEVVLELEILEVSRTKVRDLGITYP--SEFAGPGSSGAKLF------EIGEL 371 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVS 299 + + + ++ L L +TLA P + + + A G + + T + Sbjct: 372 NRRTIGVDTGYK--LKLLRTDGDTKTLANPRVRVRNREKARVHVGDRVPVISSTIVGTTN 429 Query: 300 SSTGATSVTTH-----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPS 350 + T VTT D G+ + PT+ + + + I +VS +G NAG + Sbjct: 430 LGSNNTPVTTEQIQYLDVGIKIEAEPTIYADDSVAISINLDVSS--LGNQTRTNAGTT-A 486 Query: 351 YRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 Y V R A T + L G T L GL++DD Q G+P L + P+L +F + R +R Sbjct: 487 YEVGTRNASTVLRLRDGETQALMGLIRDDDVQTGAGLPYLGEFPVLDRIFGSKRTDRRSR 546 Query: 409 EIFIAATPFLVK 420 E+ + TP LV+ Sbjct: 547 ELVLLITPQLVR 558 >gi|166211|gb|AAA32218.1| protein IV [Enterobacteria phage f1] gi|58091841|gb|AAW65343.1| gene IV protein [synthetic construct] gi|58091857|gb|AAW65354.1| gene IV protein [synthetic construct] gi|153902269|dbj|BAF74211.1| protein IV [Enterobacteria phage f1] gi|262064184|gb|ACY07165.1| IV [Enterobacteria phage f1] Length = 426 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S GG F G+ + + AL+ + + L+ P + +SGQ S S GQ++ Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSI-SVGQNVPFITG 296 Query: 300 SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 TG + ++ + G+ + P ++ G I L I ++ A D+ + Sbjct: 297 RVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN 356 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R TTV L G T++L GL G+P LSKIP++G LF + + EE+ ++ Sbjct: 357 Q-RSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLY 415 Query: 412 IAATPFLVKPVAMRDL 427 + LVK +R L Sbjct: 416 V-----LVKATIVRAL 426 >gi|47420041|gb|AAT27370.1| pIV [VCSM13 interference-resistant helper phage] Length = 426 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S GG F G+ + + AL+ + + L+ P + +SGQ S S GQ++ Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSI-SVGQNVPFITG 296 Query: 300 SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 TG + ++ + G+ + P ++ G I L I ++ A D+ + Sbjct: 297 RVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN 356 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R TTV L G T++L GL G+P LSKIP++G LF + + EE+ ++ Sbjct: 357 Q-RSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLY 415 Query: 412 IAATPFLVKPVAMRDL 427 + LVK +R L Sbjct: 416 V-----LVKATIVRAL 426 >gi|167564371|ref|ZP_02357287.1| type II/III secretion system protein [Burkholderia oklahomensis EO147] Length = 521 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ G + V + L Sbjct: 362 LSALESEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 420 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + GR+ L + ++++ +G P+ + T VE+ +GGT+ + G+ + D + Sbjct: 421 PQITPDGRVILDL--DIAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 478 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 479 DDVTRVPLLGKIPVLGALFRHRALRAQRSELVVYITPTVV 518 >gi|89256170|ref|YP_513532.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. holarctica LVS] gi|115314642|ref|YP_763365.1| type IV pilus assembly protein [Francisella tularensis subsp. holarctica OSU18] gi|156502212|ref|YP_001428277.1| type IV pilus secretin [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010550|ref|ZP_02275481.1| type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. holarctica FSC200] gi|290954188|ref|ZP_06558809.1| type IV pilus secretin [Francisella tularensis subsp. holarctica URFT1] gi|295312388|ref|ZP_06803168.1| type IV pilus secretin [Francisella tularensis subsp. holarctica URFT1] gi|89144001|emb|CAJ79239.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. holarctica LVS] gi|115129541|gb|ABI82728.1| type IV pilus assembly protein [Francisella tularensis subsp. holarctica OSU18] gi|156252815|gb|ABU61321.1| type IV pilus secretin [Francisella tularensis subsp. holarctica FTNF002-00] Length = 590 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/263 (24%), Positives = 118/263 (44%), Gaps = 33/263 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224 K+V+N ++I DQV ++ I EV R ++GF + + SS Sbjct: 332 KEVVNDIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSSRVNIGLYTFNSNPNPAP 390 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 GP+ + F G +++ G + R E + ALE + +A P L + Q Sbjct: 391 GPTPTPVDTFVGTTAKLA--YTIAGGV-RLEME--VRALESESLAEEVASPHLVVANNQV 445 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A F G+ + ++++GA +V + + L TP + G I + I V++ +G + Sbjct: 446 A-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGAS 502 Query: 345 AGDMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G P + R+ T V G T+V+ G+ + ++ + IP L IP LG L Sbjct: 503 PGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYL 562 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F ++ +++E+ I TP +++ Sbjct: 563 FSYTKITDQDSELLIFITPKIIE 585 >gi|170695725|ref|ZP_02886867.1| type IV pilus secretin PilQ [Burkholderia graminis C4D1M] gi|170139330|gb|EDT07516.1| type IV pilus secretin PilQ [Burkholderia graminis C4D1M] Length = 581 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 19/240 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFGGKFVSEGGDFS 246 QV ++ I E + +G + S+ G+S SG AD + ++ G D + Sbjct: 345 QVLIEARIVEGEHGFSRNLGVRLSMAGTSADGTTRGLSGGKDGLVADLSARPIA-GFDAA 403 Query: 247 VKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G L F+ L ALE ++ P + A G + Y+ Sbjct: 404 TAG-LTLFAAGATRLLNIELSALEAEGRGEVVSSPRVVTADRMKAVVEQGTELPYQ-AKV 461 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G + V + L P ++ GR+ L + +V++ +G P+ + T V Sbjct: 462 GQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRV 519 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 E+ GGT+ + G+ D + +PLL KIP+LGALFR+ + +E+ + TP +V+ Sbjct: 520 EVEDGGTVSIGGIYATDGRDDVTRVPLLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 579 >gi|297570248|ref|YP_003691592.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] gi|296926163|gb|ADH86973.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] Length = 532 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 24/245 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV---- 250 Q++++ I EV D + G G SG +F FG + + D + GV Sbjct: 292 QISIEAKIVEVNLDEQHKSGIDWR--GVLSGKHLNFEL-FGPEGIIYPWDAAGGGVTQAT 348 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTG--A 304 + F+ +L A+E A LA P ++ ++GQ A T G Y +T + + G + Sbjct: 349 IGPNPFQVLLDAIETQGAADVLANPKISVMNGQPALITVGETFRYISQVETTTDTGGGIS 408 Query: 305 TSVTTHDY--GVVLHFTPTVLSPGRIGLR---IQTEVSEPVI-----GVNAGDMPSYRVR 354 TSVTT G+ L PT+ I L + + +++P+ G+ +P +R Sbjct: 409 TSVTTDTVMSGLGLAVLPTITDQNEIVLSLTPVTSSLTQPMQERTFQGMTV-QLPQINIR 467 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + ++ V++ G T+++ GL+ + +P+L IPILG LF + + E+ I Sbjct: 468 ELNSVVKVRDGDTLMIGGLIDNVQDSTSHRVPILGNIPILGKLFSHETKTSRKRELVILL 527 Query: 415 TPFLV 419 P ++ Sbjct: 528 QPTII 532 >gi|219872291|ref|YP_002476666.1| competence protein E/type II secretory pathway, component HofQ [Haemophilus parasuis SH0165] gi|219692495|gb|ACL33718.1| competence protein E/type II secretory pathway, component HofQ [Haemophilus parasuis SH0165] Length = 420 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 1/161 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE I +A P L + AS G + Y S T + + + L T Sbjct: 251 LTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKKKEITDIEFREAVLGLEVT 310 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + +I L + + P +N M + ++ +T V G TIVL G+ + I Sbjct: 311 PHISKQNQILLDLAISQNSPNNQMN-NMMATIDKQEINTQVLAKHGETIVLGGIFQHLIA 369 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +PLL IP++ LF +R + E+ I TP++VK Sbjct: 370 KGEDKVPLLGSIPVIKRLFSQNRDKISKRELVIFVTPYIVK 410 >gi|153902280|dbj|BAF74221.1| protein IV [Enterobacteria phage f1] Length = 426 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S GG F G+ + + AL+ + + L+ P + +SGQ S S GQ++ Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSI-SVGQNVPFITG 296 Query: 300 SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 TG + ++ + G+ + P ++ G I L I ++ A D+ + Sbjct: 297 RVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN 356 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R TTV L G T++L GL G+P LSKIP++G LF + + EE+ ++ Sbjct: 357 Q-RSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLY 415 Query: 412 IAATPFLVKPVAMRDL 427 + LVK +R L Sbjct: 416 V-----LVKATIVRAL 426 >gi|291286288|ref|YP_003503104.1| type II and III secretion system protein [Denitrovibrio acetiphilus DSM 12809] gi|290883448|gb|ADD67148.1| type II and III secretion system protein [Denitrovibrio acetiphilus DSM 12809] Length = 509 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 99/241 (41%), Gaps = 23/241 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ + EV + G T S D GG V GG + G + F Sbjct: 268 QVLIEAKLVEVTLNDTSAYGINWRGTADGKSIGLSLGTD-GGAAVLPGG-LTAVGAISSF 325 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-- 312 + + + ++ P + ++GQSA TSG + + T + Sbjct: 326 DYSDWFAFMAAYGRVESVGNPRIRVMNGQSAMITSGQLKPFWEMERETDDDTDDVTVTYT 385 Query: 313 ------GVVLHFTPTVLSPGRIGLRIQ------TEVSEPVI---GVNAGDMPSYRVRKAD 357 G++L TP V G I L I E E + GV P+ +++A Sbjct: 386 RVTVLDGIMLGVTPHVKEDGTITLNIVPVFSDVEETPEQQLDENGVVVASYPNINLKEAG 445 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF---NREETEIFIAA 414 T + L SG T+V+ GL+ + + + +PLL +P LG LF+ S++ + E IF+ A Sbjct: 446 TVLNLESGSTVVMGGLISNVETEDETKVPLLGDVPFLGYLFK-SKYKYTQKRELVIFLTA 504 Query: 415 T 415 T Sbjct: 505 T 505 >gi|251793894|ref|YP_003008626.1| protein transport protein HofQ [Aggregatibacter aphrophilus NJ8700] gi|247535293|gb|ACS98539.1| protein transport protein HofQ [Aggregatibacter aphrophilus NJ8700] Length = 474 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 2/163 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALER + +A P L + ++AS G + Y V+ +G+ SV + + L T Sbjct: 279 LTALERENNVEIIASPRLLTTNKKAASIKQGTELPYILVNEKSGSQSVEFREAVLGLEVT 338 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + +I L + + P + G++ S ++ +T V G TIVL G+ D Sbjct: 339 PHISQDKQILLDLVVSQNAPGSRVAHGLGEVVSIDKQEINTQVFAKDGETIVLGGVFHDT 398 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I + + +PLL IP + LF ++ E+ I TP +++ Sbjct: 399 ITKNVDKVPLLGDIPGVKHLFSKESERHQKRELVIFVTPHILR 441 >gi|254459101|ref|ZP_05072524.1| type II and III secretion system protein [Campylobacterales bacterium GD 1] gi|207084372|gb|EDZ61661.1| type II and III secretion system protein [Campylobacterales bacterium GD 1] Length = 551 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 25/205 (12%) Query: 235 GGKFVSEGGDFSVK--GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G + V+E +VK G LD V+ L+ + +++ P + ++ Q A T+G + Sbjct: 294 GAQAVNEASLVTVKAGGTLDE-----VIKFLQTQGDVVSISNPKVLTLNNQPALITAGTE 348 Query: 293 HLYKTVSSST-----GATSVTTHD-------YGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + YK S + G + TT + GV+L TP + I L+I +SE Sbjct: 349 YFYKIKSETNQQGTGGGVAATTQNDTVQSVFAGVLLDITPEIADDKSITLKINPSLSETA 408 Query: 341 IGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 ++ P R+ + V + G I+L GL+ +PLL IP L Sbjct: 409 QDISQESSANRVMPPDLNRRQLSSVVTVKDGNRIILGGLINTKNVNKSNKVPLLGDIPGL 468 Query: 395 GALFRNSRFNREETEIFIAATPFLV 419 LF+ ++ E+ I P ++ Sbjct: 469 SYLFKYEEMTKQIQELVIVIEPHII 493 >gi|170766764|ref|ZP_02901217.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia albertii TW07627] gi|170124202|gb|EDS93133.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia albertii TW07627] gi|315617521|gb|EFU98127.1| conserved hypothetical protein [Escherichia coli 3431] Length = 512 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 104/226 (46%), Gaps = 37/226 (16%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 Q+ + V+I +V + L+Q+G S T G+ + S + A+ +S +F ++ Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSAAQANISSSVISNANNFMIR- 333 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307 ++AL++ + + L++P++ ++ A Y VS A+ S+ Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382 Query: 308 TTHDYGVVLHFTPTVL--SPG----------RIGLRIQ---TEVSEPVIGVNAGDMPSYR 352 T+ G +L TP +L +P R+ L IQ S+ I +P + Sbjct: 383 TS---GTLLRVTPRILDDTPNSLTGKRRERVRLLLDIQDGNQSTSQSNIQDTGSLLPEVQ 439 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + T L +G +++L G ++D K+GIPLLS IP++G+LF Sbjct: 440 NSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485 >gi|320327874|gb|EFW83879.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. race 4] Length = 775 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALE + L+ P+L ++ Q A G + S++T +SV Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 630 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS N D P R T V SG Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAKSG 690 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ Sbjct: 691 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI 744 >gi|94312199|ref|YP_585409.1| type II and III secretion system protein [Cupriavidus metallidurans CH34] gi|93356051|gb|ABF10140.1| pili assembly protein PilQ [Cupriavidus metallidurans CH34] Length = 710 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + + A G + Y++ +SS GATSV + L T Sbjct: 547 LSALEADGKGKIISSPRVVTANNIKALIEQGTELPYQSATSS-GATSVQFRKANLKLEVT 605 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ +G+ + + + T V + +GGT+V+ G+ + Sbjct: 606 PQITPEGNVLLDV--DVNKDSVGIRTDNGFAIDTKHVQTQVLVENGGTVVIGGIYSQEES 663 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +P L +P+LG F+N+ TE+ + TP Sbjct: 664 NTVNKVPWLGDLPVLGNFFKNNAKVNNRTELLVFLTP 700 >gi|167948310|ref|ZP_02535384.1| General secretion pathway protein D [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 251 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 18/205 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--EGGDFSVKGVLD 252 QV ++ TIAEV G + + G+ G K + S G FS+ G+L+ Sbjct: 51 QVLIEATIAEVSLTNNLSYGVRWFLQGNMGGSDK-WQGGLNLPLPSGVSGSGFSL-GILN 108 Query: 253 RF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------- 304 + + L ++++ L+ P + + QSASF G Q T SS + Sbjct: 109 SMDELKLFFNLLNAQSSVKFLSAPQIMVVDNQSASFRVGDQIPIITRSSQSTTNPDAPIV 168 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTV 360 T V D G +L TP V G + L I EVS+P +G G++P + R D+TV Sbjct: 169 TEVQFRDTGTLLTVTPRVNVGGMVTLEISQEVSKPGSAPAVG-GGGNVPIAQ-RTVDSTV 226 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGI 385 + SG TI+L GL+ + K+GI Sbjct: 227 VVNSGQTIILGGLISETSNDTKDGI 251 >gi|261339183|ref|ZP_05967041.1| hypothetical protein ENTCAN_05409 [Enterobacter cancerogenus ATCC 35316] gi|288319030|gb|EFC57968.1| general secretion pathway protein D [Enterobacter cancerogenus ATCC 35316] Length = 643 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 123/284 (43%), Gaps = 44/284 (15%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--G 236 +S +KV++ L+I QV ++ IAEV+ +G Q TG G FG G Sbjct: 328 NSLEKVIDKLDIR-RPQVLVEAIIAEVQDGNGMDLGVQW--TGKHGG------VQFGATG 378 Query: 237 KFVSEGGDFSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 +S+ + ++KG F ++ AL + L+ P++ + + ASF Sbjct: 379 LPISQVKNGTMKGTAFTGLATGFFNGDFGALVTALSTGSKNDILSTPSVVTLDNKEASFN 438 Query: 289 SGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342 G + S +T SV G L P + I L+I+ EVS + Sbjct: 439 VGQDVPVLSGSQTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDASAT 498 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +A P++ R + V + SG T+VL GL+++ ++ +PLL IP++G LF R Sbjct: 499 EDASLGPTFNTRTINNEVMVHSGQTVVLGGLMENVTKETVSKVPLLGDIPLVGQLF---R 555 Query: 403 FNREETE-----IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 + E+T +FI T +RD DD+YS K Sbjct: 556 YTSEDTSKRNLMVFIHTT-------VLRD----DDNYSAASKEK 588 >gi|320323732|gb|EFW79816.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. B076] Length = 775 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALE + L+ P+L ++ Q A G + S++T +SV Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 630 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS N D P R T V SG Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAQSG 690 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ Sbjct: 691 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI 744 >gi|325983467|ref|YP_004295869.1| type II and III secretion system protein [Nitrosomonas sp. AL212] gi|325532986|gb|ADZ27707.1| type II and III secretion system protein [Nitrosomonas sp. AL212] Length = 756 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 24/258 (9%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 LN E +V L V I E+ R +G F S+ + +G + GG + F Sbjct: 330 LNDLAEPEVVLDVAILEISRANTFLLGPNFPQSLQFNYAGNA------VGGAPAALISQF 383 Query: 246 SVKGVLDRFSF--ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 ++ G L F E + + + LA P + + + A G + + T + G Sbjct: 384 NMPG-LKSFGMTSEAKIDFMHNLSIGDVLANPRIRVANREKAKIHVGEKRPFFTANVQPG 442 Query: 304 ATSVTTH-----DYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRK 355 S+ T D GV L P + S + ++I EVS + V G P R Sbjct: 443 INSIVTSTPTFIDLGVKLDVEPRIGSNNDVTMKITLEVSSSTQNVSGPGGATAPLVVTRN 502 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A+T + + G T VLAGL++D +G+ L IP L LF N R + E+ + T Sbjct: 503 AETLLTVKDGETQVLAGLIQDSDTTNVKGLAGLLNIPGLDRLFSNQDVRRSKNEVVLLIT 562 Query: 416 PFLVKPVAMRDLSRPDDH 433 P +V R+L P + Sbjct: 563 PRIV-----RNLPNPTNQ 575 >gi|71733584|ref|YP_275230.1| general secretion pathway protein GspD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554137|gb|AAZ33348.1| general secretion pathway protein GspD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 759 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALE + L+ P+L ++ Q A G + S++T +SV Sbjct: 555 NLQVALRALETNGRTQILSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 614 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS N D P R T V SG Sbjct: 615 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAQSG 674 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ Sbjct: 675 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI 728 >gi|77458214|ref|YP_347719.1| type II and III secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77382217|gb|ABA73730.1| putative general secretion pathway protein D [Pseudomonas fluorescens Pf0-1] Length = 615 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 11/162 (6%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPT 321 I TLA P + +S + + GQ + ++S +T SVT D G+ L PT Sbjct: 397 INTLASPVIR-VSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPT 455 Query: 322 VLSPGRIGLRIQTEVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDI 378 V + ++I EVS P+ G +P R A T++ L G T +LAGL+++D Sbjct: 456 VHLNNEVAIKIALEVSNATPLEPTRQGTIPVQVDTRNAQTSLRLHDGETQILAGLMRNDH 515 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP L IP LG LF +++ ++E+ ++ TP +V+ Sbjct: 516 GATGNKIPGLGDIPGLGRLFGSNKDTIGKSELVLSITPRIVR 557 >gi|260869693|ref|YP_003236095.1| T3SS structure protein EscC [Escherichia coli O111:H- str. 11128] gi|221361432|emb|CAX18585.1| Type III secretion system, LEE associated [Escherichia coli] gi|257766049|dbj|BAI37544.1| T3SS structure protein EscC [Escherichia coli O111:H- str. 11128] gi|323178902|gb|EFZ64478.1| hypothetical protein ECOK1180_2636 [Escherichia coli 1180] Length = 512 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 39/227 (17%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 Q+ + V+I +V + L+Q+G S T G+ + S + A+ +S +F ++ Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQANISSSVISNASNFMIR- 333 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307 ++AL++ + + L++P++ ++ A Y VS A+ S+ Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382 Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGD----MPSY 351 T+ G +L TP +L R+ L IQ + ++ NA D +P Sbjct: 383 TS---GTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSTLPEV 438 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + + T L +G +++L G ++D K+GIPLLS IP++G+LF Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485 >gi|215488986|ref|YP_002331417.1| T3SS structure protein EscC [Escherichia coli O127:H6 str. E2348/69] gi|312967940|ref|ZP_07782152.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|54311608|emb|CAG17523.1| EscC protein [Escherichia coli] gi|215267058|emb|CAS11503.1| T3SS structure protein EscC [Escherichia coli O127:H6 str. E2348/69] gi|221361489|emb|CAX18660.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361550|emb|CAX18740.1| Type III secretion system, LEE associated [Escherichia coli] gi|312287501|gb|EFR15409.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|320193805|gb|EFW68438.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli WV_060327] gi|320201526|gb|EFW76105.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli EC4100B] Length = 512 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 107/227 (47%), Gaps = 39/227 (17%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 Q+ + V+I +V + L+Q+G S T G+ + S + A+ +S +F ++ Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQANISSSVISNASNFMIR- 333 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307 ++AL++ + + L++P++ ++ A Y VS A+ S+ Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382 Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGDMPSY--RV 353 T+ G +L TP +L R+ L IQ + ++ NA D S V Sbjct: 383 TS---GTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSTLPEV 438 Query: 354 RKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + ++ T E L +G +++L G ++D K+GIPLLS IP++G+LF Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485 >gi|330447077|ref|ZP_08310727.1| type IV pilus secretin PilQ family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491268|dbj|GAA05224.1| type IV pilus secretin PilQ family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 569 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 7/164 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ ++ P L + ++A G + Y SSS GATSV+ + L T Sbjct: 407 LSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVT 465 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA----GDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P + ++ L + EV++ G + G S ++ T V + +G T+VL G+ + Sbjct: 466 PQITPDDKLVLDL--EVTQDNKGEDVPTGEGTAVSIDTQRIGTQVLVNNGETVVLGGIYQ 523 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +P+L IP+LGALFR+ + E+ I TP +V Sbjct: 524 HSMTNVTRKVPVLGDIPVLGALFRHKMEQMGKRELLIFVTPKIV 567 >gi|307825428|ref|ZP_07655647.1| general secretion pathway protein D [Methylobacter tundripaludum SV96] gi|307733603|gb|EFO04461.1| general secretion pathway protein D [Methylobacter tundripaludum SV96] Length = 712 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 22/182 (12%) Query: 259 VLHALERATA----IRTLAEPTLTAISGQSASFTSGGQHLYKT-------------VSSS 301 +++AL A A + ++ P+L ++ Q A G Q +T +++ Sbjct: 500 IVNALLSAQANKGNVNIISSPSLMVLNNQEAKINVGDQVPIQTGTLGSVVGSGGTTGATT 559 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADT 358 +S+ D GV L TP V + G + + I+ VS V GVN P+ + ++ ++ Sbjct: 560 AIQSSIQYKDTGVTLEVTPRVNANGMVIMDIKQTVSSAVKTETGVNTS--PTIQKKEIES 617 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +V + TIVL GL+ ++ GIP L+++P +G LF N+ + E+ + TP + Sbjct: 618 SVAVQDSETIVLGGLIDNNNSNAIGGIPWLNELPWIGPLFGNTDRENIKNELVVLITPRV 677 Query: 419 VK 420 VK Sbjct: 678 VK 679 >gi|254497667|ref|ZP_05110447.1| type IV pilus (Tfp) assembly protein PilQ [Legionella drancourtii LLAP12] gi|254353104|gb|EET11859.1| type IV pilus (Tfp) assembly protein PilQ [Legionella drancourtii LLAP12] Length = 652 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 2/152 (1%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D + L ALE ++ P L + Q A SG + Y+ S+S+GAT+V Sbjct: 499 DNILLDLELSALESEGRAELISSPRLITTNQQPAVIDSGQEIPYQE-STSSGATAVAFKK 557 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + L TP + +I + ++ + G +P+ ++ T V + +G TIVL Sbjct: 558 AVLSLRVTPQITPDSKILMDLKINQDTASTQLFNG-VPAILTKEIQTNVLVSNGQTIVLG 616 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 G+ + D + IP L ++P++G LFRN++ Sbjct: 617 GIYQQDKSRTITRIPFLGQLPVVGNLFRNTQI 648 >gi|224373395|ref|YP_002607767.1| type II and III secretion system protein [Nautilia profundicola AmH] gi|223589657|gb|ACM93393.1| type II and III secretion system protein [Nautilia profundicola AmH] Length = 449 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 13/179 (7%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-STGATSVTTHDY 312 F+ +L+ L + + +++ P + ++ Q A G YK S +T T +Y Sbjct: 246 FNVGGLLNFLAQNGNVNSISNPKIVTLNNQKALIKVGDTIYYKYASEITTDNNGNPTTEY 305 Query: 313 -------GVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTTV 360 GV+L TP + G I L I +S + VN P + + V Sbjct: 306 TIDSKFVGVLLDITPQISDNGEIILSINPRISAFKDATQLSNVNRDMPPDTQDNTMISVV 365 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +L T+VL GL+ DD Q G+P+L +IPI+ LF + + E+ TP ++ Sbjct: 366 KLKDNDTLVLGGLITDDKQLKVNGVPVLKEIPIIKYLFSSREEITTKKELVFVITPHII 424 >gi|254369170|ref|ZP_04985182.1| type IV pilus assembly protein [Francisella tularensis subsp. holarctica FSC022] gi|157122120|gb|EDO66260.1| type IV pilus assembly protein [Francisella tularensis subsp. holarctica FSC022] Length = 590 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/263 (24%), Positives = 118/263 (44%), Gaps = 33/263 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------------GSSS 224 K+V+N ++I DQV ++ I EV R ++GF + + S+ Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYDVVDPSGRVNIGLYTFNSNPNSAP 390 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 GP+ + F G +++ G + R E + ALE + +A P L + Q Sbjct: 391 GPTPTPVDTFVGTTAKLA--YTIAGGV-RLEME--VRALESESLAEEVASPHLVVANNQV 445 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A F G+ + ++++GA +V + + L TP + G I + I V++ +G + Sbjct: 446 A-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGAS 502 Query: 345 AGDMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G P + R+ T V G T+V+ G+ + ++ + IP L IP LG L Sbjct: 503 PGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYL 562 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F ++ +++E+ I TP +++ Sbjct: 563 FSYTKITDQDSELLIFITPKIIE 585 >gi|124268293|ref|YP_001022297.1| fimbrial biogenesis protein [Methylibium petroleiphilum PM1] gi|124261068|gb|ABM96062.1| fimbrial biogenesis protein [Methylibium petroleiphilum PM1] Length = 721 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 4/169 (2%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++RF + ALE + ++ P + A G + Y+T +SS GAT++ Sbjct: 549 MNRF-LNLEISALEADGKGKIVSSPRVVTADQVKALIEQGTEIPYQTATSS-GATAIQFR 606 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + L P + G I L + P AG + + T V + +GGT+V+ Sbjct: 607 KATLKLEVIPQITPEGNIILDVDVNKDSPGATTAAGIL--INTKHVKTQVLVDNGGTVVI 664 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ + Q +PLL +P+LGALFR+ +TE+ + TP +V Sbjct: 665 GGIYEQTEQIDNTKVPLLGDVPVLGALFRSQTRTSNKTELLVFLTPKVV 713 >gi|15804236|ref|NP_290275.1| hypothetical protein Z5126 [Escherichia coli O157:H7 EDL933] gi|15833829|ref|NP_312602.1| EscC [Escherichia coli O157:H7 str. Sakai] gi|168748648|ref|ZP_02773670.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4113] gi|168753525|ref|ZP_02778532.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4401] gi|168759822|ref|ZP_02784829.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4501] gi|168766122|ref|ZP_02791129.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4486] gi|168772329|ref|ZP_02797336.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4196] gi|168779857|ref|ZP_02804864.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4076] gi|168785590|ref|ZP_02810597.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC869] gi|168798671|ref|ZP_02823678.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC508] gi|195936258|ref|ZP_03081640.1| EscC [Escherichia coli O157:H7 str. EC4024] gi|208808738|ref|ZP_03251075.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4206] gi|208812386|ref|ZP_03253715.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4045] gi|208819063|ref|ZP_03259383.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4042] gi|209395836|ref|YP_002273173.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4115] gi|217325945|ref|ZP_03442029.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. TW14588] gi|254795650|ref|YP_003080487.1| type III needle complex subunit [Escherichia coli O157:H7 str. TW14359] gi|261225794|ref|ZP_05940075.1| type III needle complex subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261258839|ref|ZP_05951372.1| type III needle complex subunit [Escherichia coli O157:H7 str. FRIK966] gi|291285063|ref|YP_003501881.1| escC [Escherichia coli O55:H7 str. CB9615] gi|12518466|gb|AAG58839.1|AE005596_9 escC [Escherichia coli O157:H7 str. EDL933] gi|3414909|gb|AAC31520.1| L0041 [Escherichia coli] gi|13364050|dbj|BAB37998.1| type III secretion system EscC protein [Escherichia coli O157:H7 str. Sakai] gi|187771452|gb|EDU35296.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4196] gi|188016923|gb|EDU55045.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4113] gi|189002416|gb|EDU71402.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4076] gi|189358814|gb|EDU77233.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4401] gi|189364509|gb|EDU82928.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4486] gi|189369868|gb|EDU88284.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4501] gi|189374516|gb|EDU92932.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC869] gi|189378854|gb|EDU97270.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC508] gi|195957526|gb|ACG59637.1| type III secretion system protein EscC [Escherichia coli O157:H7] gi|195957585|gb|ACG59695.1| type III secretion system protein EscC [Escherichia coli] gi|195957642|gb|ACG59751.1| EscC [Escherichia coli] gi|208728539|gb|EDZ78140.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4206] gi|208733663|gb|EDZ82350.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4045] gi|208739186|gb|EDZ86868.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4042] gi|209157236|gb|ACI34669.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4115] gi|217322166|gb|EEC30590.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. TW14588] gi|254595050|gb|ACT74411.1| type III needle complex subunit [Escherichia coli O157:H7 str. TW14359] gi|255348323|gb|ACU09465.1| type III secretion outer membrane pore YscC/HrcC family [Escherichia coli] gi|290764936|gb|ADD58897.1| escC [Escherichia coli O55:H7 str. CB9615] gi|320191251|gb|EFW65901.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC1212] gi|320639365|gb|EFX08980.1| outer membrane secretin SsaC [Escherichia coli O157:H7 str. G5101] gi|320644809|gb|EFX13845.1| outer membrane secretin SsaC [Escherichia coli O157:H- str. 493-89] gi|320650073|gb|EFX18569.1| outer membrane secretin SsaC [Escherichia coli O157:H- str. H 2687] gi|320655420|gb|EFX23355.1| outer membrane secretin SsaC [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661047|gb|EFX28483.1| outer membrane secretin SsaC [Escherichia coli O55:H7 str. USDA 5905] gi|320666172|gb|EFX33178.1| outer membrane secretin SsaC [Escherichia coli O157:H7 str. LSU-61] gi|326337301|gb|EGD61136.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. 1044] gi|326341675|gb|EGD65464.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. 1125] Length = 512 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 107/227 (47%), Gaps = 39/227 (17%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 Q+ + V+I +V + L+Q+G S T G+ + S + A+ +S +F ++ Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQANISSSVISNASNFMIR- 333 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307 ++AL++ + + L++P++ ++ A Y VS A+ S+ Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382 Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGDMPSY--RV 353 T+ G +L TP +L R+ L IQ + ++ NA D S V Sbjct: 383 TS---GTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSTLPEV 438 Query: 354 RKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + ++ T E L +G +++L G ++D K+GIPLLS IP++G+LF Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485 >gi|310765060|gb|ADP10010.1| General secretion pathway protein D [Erwinia sp. Ejp617] Length = 645 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 5/171 (2%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 ++ + +AL+ + LA P++ + A FT G T S +T SV Sbjct: 414 NWAGLFNALQTNSQNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGVFNSVDRK 473 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIV 369 G+ L P + + + I+ EVS + + ++ R TV + SG T+V Sbjct: 474 SVGIKLKVKPQINKGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNTVLVESGKTVV 533 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + GLL +++ +P+L KIP+LGALFR + + + + + P +++ Sbjct: 534 VGGLLDTTHNKVESSVPVLGKIPLLGALFRYTTDKQSKRNLMLFIRPTIIR 584 >gi|118594956|ref|ZP_01552303.1| general secretion pathway protein D [Methylophilales bacterium HTCC2181] gi|118440734|gb|EAV47361.1| general secretion pathway protein D [Methylophilales bacterium HTCC2181] Length = 1061 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 14/180 (7%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSV--TTHD 311 SF L AL T + L++P+L + + AS G + +V+++ GA++ T Sbjct: 597 SFAANLEALITKTKSQVLSKPSLMTLDNRQASIKVGTNIPIAASVTTAVGASTAGFTYLP 656 Query: 312 YGVVLHFTPTVLSPGR-IGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTV 360 G++L+ P + + I + I +S+ V GV P+ +RK T Sbjct: 657 VGIMLNIRPRISDDNQEISMLIDATISQKVDDEDVIIYNSTGVAMASAPTTTLRKIQTYA 716 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +++AGL+ G+P+LS IP+LG LF + +TE+ + TP +++ Sbjct: 717 RVNNESPLIIAGLVSKQKTMTTTGVPVLSSIPLLGGLFSFESPSNVDTEVVLIITPTIIE 776 >gi|220936186|ref|YP_002515085.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. HL-EbGR7] gi|219997496|gb|ACL74098.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. HL-EbGR7] Length = 711 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 2/153 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 ++ P + +GQ+A G + Y+ +SS GAT+V + + TP + G I L Sbjct: 559 ISSPRVITANGQTARIQQGERIPYQEATSS-GATAVQFIEAVLATEVTPQITPNGNIILN 617 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 I+ P V G PS R+ +T V + +G T+VL G+ + D + E +P + Sbjct: 618 IRVNKDNPGTLVVQG-TPSIETREVETQVFVRNGETVVLGGVYEIDSLETLEKVPFFGDL 676 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P + LFR + + + E+ I TP +++ A+ Sbjct: 677 PGIRHLFRRTGKSTRKAELLIFVTPKVIEETAL 709 >gi|134095138|ref|YP_001100213.1| mannose-sensitive hemagglutinin L [Herminiimonas arsenicoxydans] gi|133739041|emb|CAL62089.1| Putative general secretion pathway protein D [Herminiimonas arsenicoxydans] Length = 581 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 38/235 (16%) Query: 220 TGSSS--GPSKSFAADFGGKFVSEGGDFSVKGV----------LDRFSFETVLHALERAT 267 TG+SS +++F+ GG+ + G + GV L +F ++ LE Sbjct: 322 TGASSIDATARTFS---GGQLTALPGQDLLSGVSNLGSMFGLALQTKNFAALISFLETQG 378 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKT------VSSSTGATSVTTHDY------GVV 315 + L+ P + ++ Q A G + T SS TG +VT + GVV Sbjct: 379 NVHVLSSPRIATLNNQKAVLKVGTDEFFVTNVSSNITSSGTGGNTVTPNVTLQPFFSGVV 438 Query: 316 LHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGD------MPSYRVRKADTTVELPS 364 L TP + G I L I VS E VI + G + + D+ V Sbjct: 439 LDVTPQIDEQGNIILHIHPSVSDVQTSEKVINLGTGGGVLTLPLAKSNTSETDSVVRAQD 498 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G I L GL++ + +P +P+LG LFRN+ + ++ E+ I P ++ Sbjct: 499 GNIIALGGLMRQGTSSDRSQLPGAGDVPVLGNLFRNTNQSTQKRELVILLKPTII 553 >gi|269961295|ref|ZP_06175661.1| MSHA biogenesis protein MshL [Vibrio harveyi 1DA3] gi|269833961|gb|EEZ88054.1| MSHA biogenesis protein MshL [Vibrio harveyi 1DA3] Length = 544 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 34/255 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------GKFVSEGGDF 245 QV L+ I EV Q G S +S G S S D G + GG Sbjct: 270 QVILEAKILEVTLSDGYQQGINWSNMSASIGNSGSVVVDRNPVSLPLDAIGSLL--GGQT 327 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG- 303 +V +FE V+ + + L+ P +TA + Q + G + T +SS+ G Sbjct: 328 NV--TFSDGNFEAVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGN 385 Query: 304 --------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------ 346 +T G+ L TP + + G + L + EV E + +N G Sbjct: 386 GENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKKLNLGGDFQDI 445 Query: 347 DMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P + +R++D+ + G +V+ GL+K + +P L +P LG LFRN Sbjct: 446 QLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNV 505 Query: 405 REETEIFIAATPFLV 419 ++TE+ I P +V Sbjct: 506 TQKTELVILLKPTVV 520 >gi|300690208|ref|YP_003751203.1| fimbrial type-4 assembly protein [Ralstonia solanacearum PSI07] gi|299077268|emb|CBJ49894.1| fimbrial type-4 assembly protein [Ralstonia solanacearum PSI07] Length = 717 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ +SS GATSV + L T Sbjct: 554 LSALEADGRGKIISSPRVVTADNIKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVT 612 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ +G + + + T V + +GGT+V+ G+ + + Sbjct: 613 PKITPDGNVFLDV--DVNKDSVGTQTTNGFAINTKHVQTQVLVENGGTVVIGGIYTQNER 670 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +PLL IP+LG LF+++ + TE+ + TP Sbjct: 671 TDVNKVPLLGDIPVLGNLFKSTAKTNDRTELLVFLTP 707 >gi|92112745|ref|YP_572673.1| type II and III secretion system protein [Chromohalobacter salexigens DSM 3043] gi|91795835|gb|ABE57974.1| type II and III secretion system protein [Chromohalobacter salexigens DSM 3043] Length = 668 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 100/203 (49%), Gaps = 10/203 (4%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 +G++ G S + D G S G FS + + L ALE +T+++P + Sbjct: 466 SGANRG-SAGLSVDLGDSDGS-GSTFSFGYLSGDVLLDLELRALESEGKSQTISQPKVIT 523 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + ++A G + Y+ S+S+GAT+V + + L TP + G I + + ++ Sbjct: 524 ANQKTAVIKQGQEIPYQE-STSSGATNVEFKEAVLSLEATPQITPDGSIVMDLL--INND 580 Query: 340 VIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE--GIPLLSKIPILGA 396 + N+ D P+ +T V + G T+VL G+L +QL+ P L +P++G+ Sbjct: 581 TVADNSYDGAPAIDTNSIETQVLVDDGATVVLGGILTS--EQLRNLYKTPFLGDLPLIGS 638 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFR ++ + E+ E+ I TP ++ Sbjct: 639 LFRYTQESNEKVELLIFITPTII 661 >gi|254281904|ref|ZP_04956872.1| fimbrial assembly protein PilQ, putative [gamma proteobacterium NOR51-B] gi|219678107|gb|EED34456.1| fimbrial assembly protein PilQ, putative [gamma proteobacterium NOR51-B] Length = 729 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 6/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + +++P + A+ SG + Y+ +++GAT+ + + L T Sbjct: 562 LQALEASGQGEIVSQPKVITGDKLPATIKSGTEIPYQE-GAASGATTTQFKEAVLKLEVT 620 Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + GRI L + Q V E V N G +PS + T V + +G T+VL G+ + Sbjct: 621 PNITPDGRILLDLVINQDSVGEEVGTPNGGRIPSIDTTELTTQVLVGNGETVVLGGVFQS 680 Query: 377 DIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFI 412 D + +P+L IP LG LF+++ + ++ET IFI Sbjct: 681 DERIDVSKVPVLGDIPYLGNLFKSTIKQSIKQETLIFI 718 >gi|150021613|ref|YP_001306967.1| type II and III secretion system protein [Thermosipho melanesiensis BI429] gi|149794134|gb|ABR31582.1| type II and III secretion system protein [Thermosipho melanesiensis BI429] Length = 1302 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 6/146 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 ++A ++ T I LA P + A SG+ AS G + + ++++ + + GV L T Sbjct: 1142 INATDKDTKI--LASPNVVAKSGEKASILIGDK-IPIVLTTAENTQEIKYIESGVTLEIT 1198 Query: 320 PTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V + I L + +VS V V +P R R+ ++ + L T+++ GL ++ Sbjct: 1199 PFVNADNTIDLELNIKVSSFDWDVKNVYGLTLPLERTREFNSKISLKENETLIIGGLTRE 1258 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSR 402 + + + +P+L +PI+G F+ + Sbjct: 1259 ENSKTESKVPILGDLPIIGKFFKTEK 1284 >gi|71066434|ref|YP_265161.1| fimbrial assembly protein PilQ [Psychrobacter arcticus 273-4] gi|71039419|gb|AAZ19727.1| fimbrial assembly protein PilQ [Psychrobacter arcticus 273-4] Length = 756 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 7/161 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + A R I T P + Q+A +SG Q Y+ S+S GAT+ + + + L T Sbjct: 596 MQADNRGEVIST---PKILTSDKQTAKISSGTQIPYQEASAS-GATTTSFKEAALSLEAT 651 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G+IGL++ P I N + + T V + G TIVL G+ K+ Sbjct: 652 PNITPDGKIGLQLLITNGTPTIINNQVAIAEDSI---STNVIVEDGQTIVLGGVFKNRTN 708 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +P L +P +G FR + + E+ I TP L+ Sbjct: 709 NGVDKVPFLGDLPYIGRAFRKDVRSNTKEELLIFITPKLIN 749 >gi|260767306|ref|ZP_05876246.1| MSHA biogenesis protein MshL [Vibrio furnissii CIP 102972] gi|260617713|gb|EEX42892.1| MSHA biogenesis protein MshL [Vibrio furnissii CIP 102972] gi|315181306|gb|ADT88220.1| MSHA biogenesis protein MshL [Vibrio furnissii NCTC 11218] Length = 547 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 19/184 (10%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA--------- 304 SF +VL + + L+ P +TA + Q A G Y T +SS G+ Sbjct: 340 SFSSVLSFMATQGDLNVLSSPRVTAANNQKAVIKVGSDEYYVTDLSSVVGSGDNTQAAPD 399 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD----MPSYR--VRK 355 +T G+ L TP + G + L + EV++ + D +P R +R+ Sbjct: 400 VELTPFFSGISLDVTPQIDDKGNVLLHVHPSVIEVTQQDKEITYNDSTFTLPLARSSIRE 459 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +D+ + +G +V+ GL+K + +P L IP LG LFR++ E+TE+ I Sbjct: 460 SDSVIRAQNGDVVVIGGLMKTNTSNKVSKVPFLGDIPALGHLFRSTTELTEKTELVILLK 519 Query: 416 PFLV 419 P +V Sbjct: 520 PTVV 523 >gi|319955805|ref|YP_004167068.1| general secretion pathway protein d [Nitratifractor salsuginis DSM 16511] gi|319418209|gb|ADV45319.1| general secretion pathway protein D [Nitratifractor salsuginis DSM 16511] Length = 664 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/257 (22%), Positives = 114/257 (44%), Gaps = 25/257 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSFAADFGGKFV------------S 240 QV +K + E+ + IG ++ ITG +S S + GG+ V S Sbjct: 340 QVFIKARVVEINSKKARAIGAKYGITGGWLTSHGLISVGGNMGGEAVNISQRLMSLVQQS 399 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG-QSASFTSGGQHLYKTVS 299 + FS+ V F+ + L++ A L+EP++ + +S F + + + + Sbjct: 400 DDNAFSLSDVKSLFALGINIDLLQQDGAAHVLSEPSILCTNNMESELFVGETRSILTSST 459 Query: 300 SSTGATSVTTHDY-----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 + ++ ++Y G+ L P + S ++ L++ + E V + + P+ Sbjct: 460 AGDNKNDLSRNNYEREDIGLTLKVKPRLSSNNKVALKVDA-IIEDVDDSSGYNSPTPTTT 518 Query: 355 KADT--TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 K + +G T++L GL+K+ +P IPI+G LFR+ + + ++ I Sbjct: 519 KRTITTNATVRNGQTVILGGLIKNLTGAAHNKVPFFGDIPIIGRLFRDEGTAQRKVDLVI 578 Query: 413 AATPFLVKPVAMRDLSR 429 TP++V+ + DL+R Sbjct: 579 YLTPYVVRRSS--DLTR 593 >gi|262064173|gb|ACY07155.1| IV [Enterobacteria phage f1] Length = 426 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 16/195 (8%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQ 292 S GG F G+ + + AL+ + + L+ P + +SGQ S + G G+ Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGRNVPFITGR 297 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 ++ + + ++ + G+ + P ++ G I L I ++ A D+ + + Sbjct: 298 VTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITNQ 357 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R TTV L G T++L GL G+P LSKIP++G LF + + EE+ +++ Sbjct: 358 -RSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYV 416 Query: 413 AATPFLVKPVAMRDL 427 LVK +R L Sbjct: 417 -----LVKATIVRAL 426 >gi|323189406|gb|EFZ74687.1| hypothetical protein ECRN5871_2294 [Escherichia coli RN587/1] Length = 512 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 107/227 (47%), Gaps = 39/227 (17%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 Q+ + V+I +V + L+Q+G S T G+ + S + A+ +S +F ++ Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQANISSSVISNASNFMIR- 333 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307 ++AL++ + + L++P++ ++ A Y VS A+ S+ Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382 Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGDMPSY--RV 353 T+ G +L TP +L R+ L IQ + ++ NA D S V Sbjct: 383 TS---GTLLRVTPRILDDNSNSLTGKRRERVRLLLDIQ-DGNQSSNQSNAQDASSTLPEV 438 Query: 354 RKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + ++ T E L +G +++L G ++D K+GIPLLS IP++G+LF Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485 >gi|88797633|ref|ZP_01113222.1| type 4 fimbrial biogenesis protein PilQ [Reinekea sp. MED297] gi|88779805|gb|EAR10991.1| type 4 fimbrial biogenesis protein PilQ [Reinekea sp. MED297] Length = 709 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 13/209 (6%) Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGG--DFSVKGVLDRF-SFETVLHALERATAIRT 271 + I G S P +F F + G F+V + D + + ALE Sbjct: 505 IESDIYGGSPNPDLTFPDAFAVNLPATGNASSFAVGLIADNLLDLDLEISALESLGEAEV 564 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + GQ+AS SG + + G T + G+ L+ TP V ++ L Sbjct: 565 VSQPKIVTSDGQAASIFSGQNVAFP---AEDGGTQFI--EAGLNLNVTPQVTPDDKVILT 619 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + V++ + G + + V T V + +G T+VL G+ + + QL E P+L + Sbjct: 620 LT--VNQDSLAAGGGAIDTNTVS---TQVLVENGVTLVLGGVYRTEKTQLVEKAPILGDL 674 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P++G LF+ + + E +E+ I TP L++ Sbjct: 675 PVVGNLFKRTTTSDERSELLIFITPKLIQ 703 >gi|300702828|ref|YP_003744429.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CFBP2957] gi|299070490|emb|CBJ41785.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CFBP2957] Length = 713 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ +SS GATSV + L T Sbjct: 550 LSALEADGRGKIISSPRVVTADNIKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVT 608 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ +G + + + T V + +GGT+V+ G+ + + Sbjct: 609 PKITPDGNVFLDV--DVNKDSVGTQTTNGFAINTKHVQTQVLVENGGTVVIGGIYTQNER 666 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +PLL IP+LG LF+++ + TE+ + TP Sbjct: 667 TDVNKVPLLGDIPVLGNLFKSTAKTNDRTELLVFLTP 703 >gi|259907443|ref|YP_002647799.1| General secretion pathway protein D [Erwinia pyrifoliae Ep1/96] gi|224963065|emb|CAX54548.1| General secretion pathway protein D [Erwinia pyrifoliae Ep1/96] gi|283477275|emb|CAY73191.1| Type II secretion system protein outD [Erwinia pyrifoliae DSM 12163] Length = 645 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 5/171 (2%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 ++ + +AL+ + LA P++ + A FT G T S +T SV Sbjct: 414 NWAGLFNALQTNSQNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGVFNSVDRK 473 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIV 369 G+ L P + + + I+ EVS + + ++ R TV + SG T+V Sbjct: 474 SVGIKLKVKPQINKGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNTVLVESGKTVV 533 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + GLL +++ +P+L KIP+LGALFR + + + + + P +++ Sbjct: 534 VGGLLDTTHNKVESSVPVLGKIPLLGALFRYTTDKQSKRNLMLFIRPTIIR 584 >gi|89897873|ref|YP_514983.1| general secretion pathway protein D [Chlamydophila felis Fe/C-56] gi|89331245|dbj|BAE80838.1| general secretion pathway protein D [Chlamydophila felis Fe/C-56] Length = 755 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 101/233 (43%), Gaps = 23/233 (9%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 S++ L +R A P++ ++ Q+ + + + + VS+ YG+ Sbjct: 525 SYDLAYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSIAVSADKEKAQYNRAQYGI 583 Query: 315 VLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 ++ P + G+ + ++T+++ G N + P R V +P G T+++ Sbjct: 584 MIKMLPVINVGEEDGKSYITLETDITFDTTGKNTNERPDVTRRNITNKVRIPDGETVIIG 643 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKPVAMRDL--- 427 GL ++GIP L +IP +G LF + + +TE+F+ TP L P ++ Sbjct: 644 GLRCKHASDSQDGIPFLGEIPGIGKLFGMNSTSDSQTEMFVFITPKILDNPAEKKERQEE 703 Query: 428 ----SRPDDHYSV-------EDDAKAFF--FNRVNKIYGPKEASEVEGQNYKG 467 SRP ++ E+ AKA ++ I P AS+VEG Y G Sbjct: 704 AILSSRPGENAEFRKALCAGEEAAKAAHKKLELISAIELP--ASQVEGLEYDG 754 >gi|17547690|ref|NP_521092.1| fimbrial type-4 assembly signal peptide protein [Ralstonia solanacearum GMI1000] gi|17429995|emb|CAD16680.1| probable fimbrial type-4 assembly signal peptide protein [Ralstonia solanacearum GMI1000] Length = 714 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 3/157 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ +SS GATSV+ + L T Sbjct: 551 LSALEADGRGKIISSPRVVTADNIKALIEQGTEVPYQQATSS-GATSVSFKKANLKLEVT 609 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ +G + + + T V + +GGT+V+ G+ + + Sbjct: 610 PKITPDGNVFLDV--DVNKDSLGTQTTNGFAINTKHVQTQVLVENGGTVVIGGIYTQNER 667 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +PLL IP+LG LF+++ + TE+ + TP Sbjct: 668 TDVNKVPLLGDIPVLGNLFKSTAKTNDRTELLVFLTP 704 >gi|83748197|ref|ZP_00945224.1| PilQ [Ralstonia solanacearum UW551] gi|207744528|ref|YP_002260920.1| fimbrial type-4 assembly protein [Ralstonia solanacearum IPO1609] gi|83725165|gb|EAP72316.1| PilQ [Ralstonia solanacearum UW551] gi|206595934|emb|CAQ62861.1| fimbrial type-4 assembly protein [Ralstonia solanacearum IPO1609] Length = 713 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ +SS GATSV + L T Sbjct: 550 LSALEADGRGKIISSPRVVTADNIKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVT 608 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ +G + + + T V + +GGT+V+ G+ + + Sbjct: 609 PKITPDGNVFLDV--DVNKDSVGTQTTNGFAINTKHVQTQVLVENGGTVVIGGIYTQNER 666 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +PLL IP+LG LF+++ + TE+ + TP Sbjct: 667 TDVNKVPLLGDIPVLGNLFKSTAKTNDRTELLVFLTP 703 >gi|207721850|ref|YP_002252288.1| fimbrial type-4 assembly protein [Ralstonia solanacearum MolK2] gi|206587017|emb|CAQ17601.1| fimbrial type-4 assembly protein [Ralstonia solanacearum MolK2] Length = 713 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ +SS GATSV + L T Sbjct: 550 LSALEADGRGKIISSPRVVTADNIKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVT 608 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ +G + + + T V + +GGT+V+ G+ + + Sbjct: 609 PKITPDGNVFLDV--DVNKDSVGTQTTNGFAINTKHVQTQVLVENGGTVVIGGIYTQNER 666 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +PLL IP+LG LF+++ + TE+ + TP Sbjct: 667 TDVNKVPLLGDIPVLGNLFKSTAKTNDRTELLVFLTP 703 >gi|329943286|ref|ZP_08292060.1| bacterial type II and III secretion system family protein [Chlamydophila psittaci Cal10] gi|332287864|ref|YP_004422765.1| putative general secretion pathway protein D [Chlamydophila psittaci 6BC] gi|313848436|emb|CBY17440.1| probable general secretion pathway protein D [Chlamydophila psittaci RD1] gi|325507393|gb|ADZ19031.1| putative general secretion pathway protein D [Chlamydophila psittaci 6BC] gi|328814833|gb|EGF84823.1| bacterial type II and III secretion system family protein [Chlamydophila psittaci Cal10] gi|328915126|gb|AEB55959.1| general secretion pathway protein D [Chlamydophila psittaci 6BC] Length = 753 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 23/219 (10%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SP 325 +R A P++ ++ Q+ + + + + VS+ YG+++ P + Sbjct: 537 VRINASPSVVTMN-QTPARIAIVEEMSIAVSADKEKAQYNRAQYGIMIKMLPVINVGDED 595 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G+ + ++T+++ G NA + P R V +P G T+++ GL ++GI Sbjct: 596 GKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVIIGGLRCKHASDSQDGI 655 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKPVAMRDL-------SRPDDHYSV- 436 P L +IP +G LF + +TE+F+ TP L P+ ++ SRP ++ Sbjct: 656 PFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILDNPIEKKERHEEAILSSRPGENTEFR 715 Query: 437 ------EDDAKAFF--FNRVNKIYGPKEASEVEGQNYKG 467 E+ AKA ++ I P AS+V+G Y G Sbjct: 716 QALLAGEEAAKAAHKKLELISAIELP--ASQVQGLEYDG 752 >gi|88858661|ref|ZP_01133302.1| MSHA biogenesis protein MshL [Pseudoalteromonas tunicata D2] gi|88818887|gb|EAR28701.1| MSHA biogenesis protein MshL [Pseudoalteromonas tunicata D2] Length = 563 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 113/263 (42%), Gaps = 27/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVR-RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 K+ + L + + QV L+ I EV +D +Q + G +FA G+ + Sbjct: 281 KEFLRLSEESLQRQVILEAKIIEVTLKDDYQQGVNWKEVLGHIGSTDLTFATTASGQIGN 340 Query: 241 E-----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 GG S+ V F V+ L ++ L+ P +TA + Q A G + Sbjct: 341 TITAGIGGVSSL--VFKNADFSGVVSLLSTQGDVQMLSNPRVTATNNQKAVIKVGQDEYF 398 Query: 296 KTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PV 340 T SST T S+T G+ L TP + G + L + V+E V Sbjct: 399 VTEVSSTTVTGNATTTTPEISLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETAEQRKV 458 Query: 341 IGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 I +N + + +R++DT + SG +V+ GL++ + PLL +P+LG Sbjct: 459 ITLNNEEFVLPLAQSNIRESDTVIRAGSGEIVVIGGLMQTVTTDEESKTPLLGDMPVLGH 518 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LF++ R +++ E+ I P +V Sbjct: 519 LFKSVRKRQDKKELIILIKPTVV 541 >gi|149190625|ref|ZP_01868893.1| type II secretory pathway, component EpsD [Vibrio shilonii AK1] gi|148835508|gb|EDL52477.1| type II secretory pathway, component EpsD [Vibrio shilonii AK1] Length = 674 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 11/176 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTH 310 + ++ A+ + L+ P++T + ASF G + T S++ S V Sbjct: 444 WTALITAVSSTSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSNNSNPFQTVDRK 503 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + G+ L P + + L I+ EVS V+G N + R+ +T+V + G +VL Sbjct: 504 EVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVL 562 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ + + + +P L IP LG LF ++ E+ + + +KP +RD Sbjct: 563 GGLIDERAAESESKVPFLGDIPYLGRLFTSTSTTVEKKNLMV-----FIKPTIIRD 613 >gi|262280337|ref|ZP_06058121.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] gi|262258115|gb|EEY76849.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] Length = 717 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 88/177 (49%), Gaps = 7/177 (3%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HD 311 F + L AL+ ++ P + Q A +G Q Y+T ++S ++ TT D Sbjct: 543 FMLDLELSALQADGYGEVISTPKVMTADKQRARVATGQQVPYQTTTNSAAGSTATTSFKD 602 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIV 369 + L TP++ G+I +++ ++S+ + +A G++ + + +T V + +G T++ Sbjct: 603 ALLSLDVTPSITPDGKIQMKL--DISKDSVADSAPNGELILNK-NQINTNVLVNNGETVI 659 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L G+ + + +P L +P++G LFR + ++ E+ I TP +V +R+ Sbjct: 660 LGGVFEQATSNSQTKVPFLGDLPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRN 716 >gi|152980977|ref|YP_001355054.1| PilQ type IV pilus assembly protein [Janthinobacterium sp. Marseille] gi|151281054|gb|ABR89464.1| PilQ type IV pilus assembly protein [Janthinobacterium sp. Marseille] Length = 686 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 4/167 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ +SS GATSV+ + L T Sbjct: 523 LSALEADGKGKVISSPRVITADQLKALIEQGTELPYQQATSS-GATSVSFRKANLKLEVT 581 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ +GV + + T V + +GGT+V+ G+ + + Sbjct: 582 PQITPDGNVILDV--DVNKDTVGVETRSGFAIDTKHVKTQVLIDNGGTVVIGGIFQQTER 639 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKPVAMR 425 +P IP+ G LF+ + ++TE+ I TP L V++R Sbjct: 640 DSVSKVPFFGDIPVFGNLFKTTGRTNDKTELLIFLTPKILTDKVSIR 686 >gi|114331780|ref|YP_748002.1| type IV pilus secretin PilQ [Nitrosomonas eutropha C91] gi|114308794|gb|ABI60037.1| type IV pilus secretin PilQ [Nitrosomonas eutropha C91] Length = 720 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 4/160 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + R +A P L + AS G + ++T+S + G L T Sbjct: 552 LSALESDSQGRIIASPRLVTANRVEASIEQGTEIPFQTISVTRPQIQFKKAVLG--LKVT 609 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + I +++Q V++ G + P+ ++ T V + +GGT+V+ G+ + + Sbjct: 610 PQITPDDNIIMKLQ--VNQDTRGESTPAGPAIDTKQIVTEVLVENGGTVVIGGIFEQVEK 667 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + IPLL +P+LG LF+N+ ++ E+ I TP ++ Sbjct: 668 RDRNQIPLLGDVPLLGNLFKNTAKRDDKRELLIFVTPRIL 707 >gi|193070395|ref|ZP_03051337.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli E110019] gi|192956334|gb|EDV86795.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli E110019] Length = 512 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 107/227 (47%), Gaps = 39/227 (17%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 Q+ + V+I +V + L+Q+G S T G+ + S + A+ +S +F ++ Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQANISSSVISNASNFMIR- 333 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307 ++AL++ + + L++P++ ++ A Y VS A+ S+ Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLESI 382 Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGDMPSY--RV 353 T+ G +L TP +L R+ L IQ + ++ NA D S V Sbjct: 383 TS---GTLLRVTPRILDGSSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSTLPEV 438 Query: 354 RKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + ++ T E L +G +++L G ++D K+GIPLLS IP++G+LF Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485 >gi|51556732|gb|AAU06138.1| MshL [Pseudoalteromonas tunicata] Length = 563 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 27/250 (10%) Query: 195 QVTLKVTIAEVR-RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-----GGDFSVK 248 QV L+ I EV +D +Q + G +FA G+ + GG S+ Sbjct: 294 QVILEAKIIEVTLKDDYQQGVNWKEVLGHIGSTDLTFATTASGQIGNTITAGIGGVSSL- 352 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--- 305 V F V+ L ++ L+ P +TA + Q A G + T SST T Sbjct: 353 -VFKNADFSGVVSLLSTQGDVQMLSNPRVTATNNQKAVIKVGQDEYFVTEVSSTTVTGNA 411 Query: 306 -------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGD----MP 349 S+T G+ L TP + G + L + V+E VI +N + + Sbjct: 412 TTTTPEISLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETAEQRKVITLNNEEFVLPLA 471 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R++DT + SG +V+ GL++ + PLL +P+LG LF++ R +++ E Sbjct: 472 QSNIRESDTVIRAGSGEIVVIGGLMQTVTTDEESKTPLLGDMPVLGHLFKSVRKRQDKKE 531 Query: 410 IFIAATPFLV 419 + I P +V Sbjct: 532 LIILIKPTVV 541 >gi|89093859|ref|ZP_01166805.1| putative MSHA biogenesis protein MshL [Oceanospirillum sp. MED92] gi|89081989|gb|EAR61215.1| putative MSHA biogenesis protein MshL [Oceanospirillum sp. MED92] Length = 524 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 103/246 (41%), Gaps = 24/246 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSE--GGDFSVKGVL 251 QV ++ I EV + Q G SI G SG + +F G + GG F K L Sbjct: 255 QVVIEAKILEVTLNNGFQAGVNWSILGEPGSGNTANFTQSSVGLTNQDAIGGIF--KADL 312 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-------- 303 F V+ L ++ L+ P ++ ++ Q A G + T +T Sbjct: 313 SIGDFSAVIELLGSQGDVQVLSSPRVSTVNNQKAVIKVGTDEFFVTEVENTTTTGTSTTT 372 Query: 304 --ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGDMPSY--R 352 + +T G+ L TP + + G I L I VSE V +G + ++P Sbjct: 373 SPSIELTPFFSGIALDVTPQISANGDIVLHIHPTVSEVVDQQKQISVGTDDFNIPLALSS 432 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +R++D+ V SG IV+ GL+K + P L IP +G LF+ R +TE+ I Sbjct: 433 IRESDSIVRAESGQVIVIGGLMKSSDSDTQAKTPGLGDIPGVGNLFKQKRQAGSKTELVI 492 Query: 413 AATPFL 418 P L Sbjct: 493 MLRPVL 498 >gi|120554944|ref|YP_959295.1| general secretion pathway protein D [Marinobacter aquaeolei VT8] gi|120324793|gb|ABM19108.1| general secretion pathway protein D [Marinobacter aquaeolei VT8] Length = 649 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 105/255 (41%), Gaps = 32/255 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-------------------- 234 QV ++ I E+ ++ Q+G Q + S+G + Sbjct: 349 QVMIEAAIVEISDELGDQLGVQLAAGDESAGSFPVLGTNLTSGQGMVGLNSVIGALVGDT 408 Query: 235 -----GGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 GG V G D G+L + + L +I TL I GQ+ Sbjct: 409 IPQLAGGLTVGAGQRDEDGVTWGLLIQALSSSSAANLLSTPSIITLDNQESEIIVGQNVP 468 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI-QTEVSEPVIGVN- 344 F + GQ ++ T++ D G+ L TPT+ + G + L + QT V+ Sbjct: 469 FRT-GQSTVTGDGTTNPFTTIERRDVGLSLKVTPTISADGLVRLVVEQTTEDISTTSVDG 527 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 A D+ + + R+ TTV G T+VL GL+KDD Q K +PLL IP+LG LF + Sbjct: 528 ASDLITNK-REIKTTVLADDGETVVLGGLIKDDYQVSKSKVPLLGDIPVLGRLFSSESET 586 Query: 405 REETEIFIAATPFLV 419 R + + + P ++ Sbjct: 587 RVKRNLLVFLRPTIM 601 >gi|254180385|ref|ZP_04886983.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1655] gi|254190347|ref|ZP_04896855.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pasteur 52237] gi|254261204|ref|ZP_04952258.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1710a] gi|157938023|gb|EDO93693.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pasteur 52237] gi|184210924|gb|EDU07967.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1655] gi|254219893|gb|EET09277.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1710a] Length = 445 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ G + V + L Sbjct: 286 LSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 344 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + GR+ L + +V++ +G P+ + T VE+ +GGT+ + G+ + D + Sbjct: 345 PQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 402 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 403 DDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 442 >gi|167571519|ref|ZP_02364393.1| type II/III secretion system protein [Burkholderia oklahomensis C6786] Length = 555 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + ++++ +G P+ Sbjct: 426 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DIAKDSVGEETASGPA 483 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ Sbjct: 484 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRALRAQRSEL 543 Query: 411 FIAATPFLV 419 + TP +V Sbjct: 544 VVYITPTVV 552 >gi|51594667|ref|YP_068858.1| type III secretion protein EscC/SpiA, outer membrane pore [Yersinia pseudotuberculosis IP 32953] gi|51587949|emb|CAH19552.1| possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia pseudotuberculosis IP 32953] Length = 523 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 28/220 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ + VTI +V + Q+G S + S G SF + F K +EG FS + D Sbjct: 297 QIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA-KNNAEG--FSTV-IGDTG 352 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +F L+AL++ + R L++P++ ++ A K T G Sbjct: 353 NFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKLQGEKVAKLESVTS--GS 410 Query: 315 VLHFTPTVLSPGRIGLRIQTE-VSEPVIGVNAGD------------MPSYRVRKADTTVE 361 +L TP + I+TE V E ++ +N D +P R T Sbjct: 411 LLRVTPRM---------IETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQAT 461 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 L G +++L G ++D + + IPLL IP+LG LFR++ Sbjct: 462 LQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRST 501 >gi|300771988|ref|ZP_07081859.1| type II general secretion pathway D protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761374|gb|EFK58199.1| type II general secretion pathway D protein [Sphingobacterium spiritivorum ATCC 33861] Length = 624 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 24/242 (9%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSI------TGSSSGPSKSFAADFGG-----KFVSEGGD 244 V ++VT+ ++ + + G + + TG S P+ F G F+ + Sbjct: 382 VLIEVTLLDINKGNTVKTGIKMGVADSIPQTGGSLFPALDFTFGAGSINRFLSFLGKNNA 441 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302 F++ V +F L ALE + + P L+ ++G A + G + YKT + + Sbjct: 442 FNLGRVTP--NFYVTLSALEANKNVEMRSIPKLSTLNGHQAKLSIGSKRYYKTTTQNVIP 499 Query: 303 -------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 T + + + P + +I L+I ++S+ V V G P K Sbjct: 500 SLQTTTVTTEQFTPVEANMNIDIKPVISGDDQITLKITVDISDFVGTVKDGQPPPTSTSK 559 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIA 413 ++ + + IVL G+ + + G+PLLS+IP+L LF R N+ + +FI Sbjct: 560 FESIIRARNEDMIVLGGIERTENSSSGSGVPLLSRIPVLKWLFSSREKTTNKVVSVVFIK 619 Query: 414 AT 415 T Sbjct: 620 PT 621 >gi|197336466|ref|YP_002157259.1| general secretion pathway protein D [Vibrio fischeri MJ11] gi|197317956|gb|ACH67403.1| general secretion pathway protein D [Vibrio fischeri MJ11] Length = 678 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 16/159 (10%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPT 321 L+ P++T + ASF G + V TG+T+ +++D G+ L P Sbjct: 459 LSSPSITVMDNGEASFIVG-----EEVPVLTGSTAGSSNDNPFQTVDRKEVGIKLKVVPQ 513 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + + Sbjct: 514 INEGDSVRLDIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALES 572 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +P L IP+LG LF+++ E+ + + P +++ Sbjct: 573 ESKVPFLGDIPVLGYLFKSTSTQVEKKNLMVFIKPTIIR 611 >gi|156975932|ref|YP_001446839.1| hypothetical protein VIBHAR_03698 [Vibrio harveyi ATCC BAA-1116] gi|156527526|gb|ABU72612.1| hypothetical protein VIBHAR_03698 [Vibrio harveyi ATCC BAA-1116] Length = 544 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 34/255 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------GKFVSEGGDF 245 QV L+ I EV Q G S +S G S S D G + GG Sbjct: 270 QVILEAKILEVTLSDGYQQGINWSNMSASIGNSGSILVDRNPAKLPLDAIGTLL--GGQT 327 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG- 303 +V +FE V+ + + L+ P +TA + Q + G + T +SS+ G Sbjct: 328 NV--TFSDGNFEAVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGN 385 Query: 304 --------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------ 346 +T G+ L TP + + G + L + EV E + +N G Sbjct: 386 GENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQLNLGGDFQNI 445 Query: 347 DMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P + +R++D+ + G +V+ GL+K + +P L +P LG LFRN Sbjct: 446 QLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNV 505 Query: 405 REETEIFIAATPFLV 419 ++TE+ I P +V Sbjct: 506 TQKTELVILLKPTVV 520 >gi|22124429|ref|NP_667852.1| secretin [Yersinia pestis KIM 10] gi|45440265|ref|NP_991804.1| type III secretion protein [Yersinia pestis biovar Microtus str. 91001] gi|150260696|ref|ZP_01917424.1| possible type III secretion protein [Yersinia pestis CA88-4125] gi|165926705|ref|ZP_02222537.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. F1991016] gi|167402490|ref|ZP_02307945.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|218927462|ref|YP_002345337.1| putative type III secretion protein [Yersinia pestis CO92] gi|229836509|ref|ZP_04456675.1| possible type III secretion protein [Yersinia pestis Pestoides A] gi|229840118|ref|ZP_04460277.1| possible type III secretion protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842199|ref|ZP_04462354.1| possible type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904060|ref|ZP_04519173.1| possible type III secretion protein [Yersinia pestis Nepal516] gi|294502332|ref|YP_003566394.1| possible type III secretion protein [Yersinia pestis Z176003] gi|21957215|gb|AAM84103.1|AE013653_3 putative secretin [Yersinia pestis KIM 10] gi|45435121|gb|AAS60681.1| possible type III secretion protein [Yersinia pestis biovar Microtus str. 91001] gi|115346073|emb|CAL18941.1| possible type III secretion protein [Yersinia pestis CO92] gi|149290104|gb|EDM40181.1| possible type III secretion protein [Yersinia pestis CA88-4125] gi|165921328|gb|EDR38552.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. F1991016] gi|167048140|gb|EDR59548.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|229679830|gb|EEO75933.1| possible type III secretion protein [Yersinia pestis Nepal516] gi|229690509|gb|EEO82563.1| possible type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696484|gb|EEO86531.1| possible type III secretion protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706193|gb|EEO92201.1| possible type III secretion protein [Yersinia pestis Pestoides A] gi|262360412|gb|ACY57133.1| possible type III secretion protein [Yersinia pestis D106004] gi|262364362|gb|ACY60919.1| possible type III secretion protein [Yersinia pestis D182038] gi|294352791|gb|ADE63132.1| possible type III secretion protein [Yersinia pestis Z176003] gi|320013878|gb|ADV97449.1| putative type III secretion protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 523 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 28/220 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ + VTI +V + Q+G S + S G SF + F K +EG FS + D Sbjct: 297 QIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA-KNNAEG--FSTV-IGDTG 352 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +F L+AL++ + R L++P++ ++ A K T G Sbjct: 353 NFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKLQGEKVAKLESVTS--GS 410 Query: 315 VLHFTPTVLSPGRIGLRIQTE-VSEPVIGVNAGD------------MPSYRVRKADTTVE 361 +L TP + I+TE V E ++ +N D +P R T Sbjct: 411 LLRVTPRM---------IETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQAT 461 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 L G +++L G ++D + + IPLL IP+LG LFR++ Sbjct: 462 LQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRST 501 >gi|167847616|ref|ZP_02473124.1| type IV pilus secretin PilQ [Burkholderia pseudomallei B7210] Length = 460 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ G + V + L Sbjct: 301 LSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 359 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + GR+ L + +V++ +G P+ + T VE+ +GGT+ + G+ + D + Sbjct: 360 PQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 417 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 418 DDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 457 >gi|254300620|ref|ZP_04968065.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 406e] gi|157810585|gb|EDO87755.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 406e] Length = 455 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ G + V + L Sbjct: 296 LSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 354 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + GR+ L + +V++ +G P+ + T VE+ +GGT+ + G+ + D + Sbjct: 355 PQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 412 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 413 DDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 452 >gi|91787225|ref|YP_548177.1| type II and III secretion system protein [Polaromonas sp. JS666] gi|91696450|gb|ABE43279.1| type II and III secretion system protein [Polaromonas sp. JS666] Length = 747 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 41/237 (17%) Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS----- 281 + S A+ G ++ G V G L RF LE A L+ P L + Sbjct: 473 APSTGANLGVAHLTNG--VYVLGFLARF--------LEANGAGNILSTPNLLTLDNEEAR 522 Query: 282 ---GQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 GQ+ F +G Y ++S G+ ++ D G+ L P + G + ++I Sbjct: 523 IVIGQNVPFITG---QYTNANTSAGSVNPFQTIERKDVGLTLRVKPQISENGTVKMQIFQ 579 Query: 335 EVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 EVS +P +N+ R ++ V + G +VL GLL+D+ E +P L IP Sbjct: 580 EVSSVQPS-SINSATGLITNKRSIESNVLVDDGAIVVLGGLLQDEYSGNVEKVPGLGDIP 638 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--------LSRPDDHYSVEDDAK 441 ILG LF+ +R++T + + ++PV +RD + R D +V+ DA+ Sbjct: 639 ILGHLFKGETRSRKKTNLMV-----FLRPVVVRDAPSSESLSMDRYDLMRAVQKDAQ 690 >gi|329905849|ref|ZP_08274237.1| Fimbrial assembly protein pilQ precursor [Oxalobacteraceae bacterium IMCC9480] gi|327547489|gb|EGF32305.1| Fimbrial assembly protein pilQ precursor [Oxalobacteraceae bacterium IMCC9480] Length = 327 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + Q A G + Y+ +SS GATSV + L T Sbjct: 164 LSALEADGRGKVISSPRVVTADQQQALIEQGEEIPYQKATSS-GATSVEFKKANLKLEVT 222 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G I L + +V++ G A + + T V++ +GGT+VL G+ Sbjct: 223 PQITPDGNIILTV--DVNKDSRGAPAPGGFAINTKHVKTNVQVENGGTVVLGGIFTQREL 280 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP IP++G LF+ + ++TE+ I TP +V Sbjct: 281 DSVTKIPFFGDIPVVGNLFKTTGRTNDKTELLIFITPKIV 320 >gi|309782882|ref|ZP_07677602.1| type IV pilus biogenesis protein PilQ [Ralstonia sp. 5_7_47FAA] gi|308918306|gb|EFP63983.1| type IV pilus biogenesis protein PilQ [Ralstonia sp. 5_7_47FAA] Length = 719 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 3/157 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ +SS GATSV+ + L T Sbjct: 556 LSALEADGRGKIVSSPRVVTADNIKALIEQGTEIPYQQATSS-GATSVSFKKANLKLEVT 614 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G I L + +V++ +G+ + + + T V + +GGT+V+ G+ + + Sbjct: 615 PKITPDGNIFLDV--DVNKDSVGIQTTNGFAIDTKHVQTQVLVENGGTVVIGGIYTQNER 672 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +PLL IP+LG LF+++ TE+ + TP Sbjct: 673 TDINKVPLLGDIPVLGNLFKSTSKINNRTELLVFLTP 709 >gi|209520029|ref|ZP_03268806.1| type IV pilus secretin PilQ [Burkholderia sp. H160] gi|209499514|gb|EDZ99592.1| type IV pilus secretin PilQ [Burkholderia sp. H160] Length = 569 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 19/240 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAA-------DFGGKFVSEGGDFS 246 QV ++ I E + +G + S+ G+S+ G SK + D + +S G D + Sbjct: 333 QVLIEAQIVEGDHGFSRNLGVRLSLAGTSADGTSKGLSGGADGTVYDLSARPIS-GFDAA 391 Query: 247 VKGVLDRFSFETV------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G L F+ L ALE + ++ P + A G + Y+ Sbjct: 392 TAG-LTLFAAHATRLLNIELSALESEGHGKIVSSPRVVTADRMKAIVEQGTELPYQ-AKV 449 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G + V + L P ++ GR+ L + +V++ +G P+ + T V Sbjct: 450 GQGISGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGAQTDAGPAINTKHVQTRV 507 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 E+ GGT+ + G+ + + E +P+L KIPILGALFR+ + +E+ + TP +V+ Sbjct: 508 EVEDGGTVSIGGIYETSDRDDVERVPILGKIPILGALFRDRTHSDTRSELAVFITPRVVR 567 >gi|262377049|ref|ZP_06070275.1| general secretion pathway protein D [Acinetobacter lwoffii SH145] gi|262308087|gb|EEY89224.1| general secretion pathway protein D [Acinetobacter lwoffii SH145] Length = 710 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 7/180 (3%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L F + L AL+ ++ P + Q A+ SG + Y++ S + TT Sbjct: 533 LSDFMLDLELSALQADGYGEVISTPKVLTADKQKATVESGVEVPYQSTEGSGANATATTE 592 Query: 311 DYGVVLHF--TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGG 366 VVL TP++ G++ + + S+ + GV M Y + K +T V + +G Sbjct: 593 FKDVVLKLDVTPSITPDGKVQMSLDIS-SDSIAGVTP--MGEYYLNKNRLNTNVLVENGE 649 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T+VL G+ + + + +P L IP LG LFR + + E+ I TP +V R+ Sbjct: 650 TVVLGGIFEQETLNNQTKVPFLGDIPYLGRLFRKDVKSDNKRELLIFVTPRIVNDSVSRN 709 >gi|126454219|ref|YP_001067989.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106a] gi|242314362|ref|ZP_04813378.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106b] gi|126227861|gb|ABN91401.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106a] gi|242137601|gb|EES24003.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106b] Length = 465 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ G + V + L Sbjct: 306 LSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 364 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + GR+ L + +V++ +G P+ + T VE+ +GGT+ + G+ + D + Sbjct: 365 PQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 422 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 423 DDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 462 >gi|332535460|ref|ZP_08411243.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Pseudoalteromonas haloplanktis ANT/505] gi|332035105|gb|EGI71619.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Pseudoalteromonas haloplanktis ANT/505] Length = 639 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 115/276 (41%), Gaps = 41/276 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVS 240 KV++ + + QV + V + EV + LKQ ++ I+ S+G K A FG G Sbjct: 340 KVLSSIEVEDLPQVRVSVQLYEVNQRRLKQ--WRPDISVLSNGYEKE-AGLFGRDGMTER 396 Query: 241 EGGDFSVKGVLD---------------RFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 E G +++ L +F+ + + LE+ RTL+ PT+T ++G+SA Sbjct: 397 ESGSATIENALQLIGGQLTNNLQLSTSQFAIDMLFSLLEQEGISRTLSRPTITVLAGESA 456 Query: 286 SFTSGGQHLYKTVSSSTGATS------------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 F GG+ T S +G TS +GV L+ V RI L + Sbjct: 457 VFKVGGEVPVPTSYSPSGITSGQQGSSGSVFSGTEFKSFGVELNVRAMVDDKDRITLDLN 516 Query: 334 TEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +S P + A + ++ R T+ L G +++ GL+ D + Sbjct: 517 PVISLPDTTLTAEIAQSTGSSLNSSAFNTRSMQTSTRLKDGQPLIIGGLISTDNNASHDF 576 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P + +LG L + + E+ I TP LV+ Sbjct: 577 VPDGNGNSMLGKLSETTSKSENNRELIIVVTPNLVR 612 >gi|241664484|ref|YP_002982844.1| type IV pilus secretin PilQ [Ralstonia pickettii 12D] gi|240866511|gb|ACS64172.1| type IV pilus secretin PilQ [Ralstonia pickettii 12D] Length = 721 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 3/157 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ +SS GATSV+ + L T Sbjct: 558 LSALEADGRGKIVSSPRVVTADNIKALIEQGTEIPYQQATSS-GATSVSFKKANLKLEVT 616 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G I L + +V++ +G+ + + + T V + +GGT+V+ G+ + + Sbjct: 617 PKITPDGNIFLDV--DVNKDSVGIQTTNGFAIDTKHVQTQVLVENGGTVVIGGIYTQNER 674 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +PLL IP+LG LF+++ TE+ + TP Sbjct: 675 TDINKVPLLGDIPVLGNLFKSTSKINNRTELLVFLTP 711 >gi|59713081|ref|YP_205857.1| general secretion pathway protein D [Vibrio fischeri ES114] gi|59481182|gb|AAW86969.1| general secretion pathway protein D [Vibrio fischeri ES114] Length = 673 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 8/171 (4%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 ++ ++ A+ + L+ P++T + ASF G + + S++G+ +V Sbjct: 439 WKALVTAVSTDSNSNILSSPSITVMDNGEASFIVG-EEVPVLTGSTSGSNNENPFQTVDR 497 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + G+ L P + + L I+ EVS V+G N + R+ +T+V + G +V Sbjct: 498 KEVGIKLKVVPQINEGDSVRLDIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLV 556 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L GL+ + + + +P L IP+LG LF+++ E+ + + P +++ Sbjct: 557 LGGLIDERALESESKVPFLGDIPVLGHLFKSTSTRVEKKNLMVFIKPTIIR 607 >gi|53720777|ref|YP_109763.1| putative secretion system protein [Burkholderia pseudomallei K96243] gi|52211191|emb|CAH37180.1| putative secretion system protein [Burkholderia pseudomallei K96243] Length = 442 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ G + V + L Sbjct: 283 LSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 341 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + GR+ L + +V++ +G P+ + T VE+ +GGT+ + G+ + D + Sbjct: 342 PQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 399 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 400 DDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 439 >gi|167740501|ref|ZP_02413275.1| type II/III secretion system protein [Burkholderia pseudomallei 14] gi|167826105|ref|ZP_02457576.1| type II/III secretion system protein [Burkholderia pseudomallei 9] gi|167896189|ref|ZP_02483591.1| type II/III secretion system protein [Burkholderia pseudomallei 7894] gi|167904571|ref|ZP_02491776.1| type II/III secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|167912835|ref|ZP_02499926.1| type II/III secretion system protein [Burkholderia pseudomallei 112] gi|167920795|ref|ZP_02507886.1| type II/III secretion system protein [Burkholderia pseudomallei BCC215] gi|254198490|ref|ZP_04904911.1| type IV pilus secretin PilQ [Burkholderia pseudomallei S13] gi|254201342|ref|ZP_04907706.1| type IV pilus secretin PilQ [Burkholderia mallei FMH] gi|147747236|gb|EDK54312.1| type IV pilus secretin PilQ [Burkholderia mallei FMH] gi|169655230|gb|EDS87923.1| type IV pilus secretin PilQ [Burkholderia pseudomallei S13] Length = 457 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ G + V + L Sbjct: 298 LSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 356 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + GR+ L + +V++ +G P+ + T VE+ +GGT+ + G+ + D + Sbjct: 357 PQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 414 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 415 DDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 454 >gi|209694066|ref|YP_002261994.1| type IV pilus, mannose-sensitive hemagglutinin D (MSHD) [Aliivibrio salmonicida LFI1238] gi|208008017|emb|CAQ78154.1| type IV pilus, mannose-sensitive hemagglutinin D (MSHD) [Aliivibrio salmonicida LFI1238] Length = 546 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 23/187 (12%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG---------A 304 +F VL ++ + L+ P +TA + Q A G + T VSS TG Sbjct: 338 NFSAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGRDEYFVTEVSSVTGNGDNSNASPE 397 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV----SEPVIGVNAGD--------MPSYR 352 ++T G+ L TP + G + L + V +E I ++ GD + Sbjct: 398 VTLTPFFSGISLDVTPQIDDKGNVMLHVHPSVIDVETETKI-IDLGDVGGVLELPLAKSS 456 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +R++D+ + SG +V+ GL+K +P L IP+LG LFRN +TE+ I Sbjct: 457 IRESDSVIRAKSGDVVVIGGLMKSQTVDQVSKVPFLGDIPVLGHLFRNVSQLTTKTELVI 516 Query: 413 AATPFLV 419 P +V Sbjct: 517 LLKPTVV 523 >gi|195952458|ref|YP_002120748.1| general secretion pathway protein D [Hydrogenobaculum sp. Y04AAS1] gi|195932070|gb|ACG56770.1| general secretion pathway protein D [Hydrogenobaculum sp. Y04AAS1] Length = 660 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 87/183 (47%), Gaps = 10/183 (5%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTHDY---GVV 315 L LE+ + ++ P + + + A + Y T + + T+DY G+ Sbjct: 463 LSLLEQGNGFKIISNPKVLTLDNEEAIIKEAQVYPYVTGTQYNINGFPILTYDYKDIGLE 522 Query: 316 LHFTPTVLSPG-RIGLRIQTEVSEPVIGVN-AGD---MPSYRVRKADTTVELPSGGTIVL 370 L PTV R+G+ + + N AG +P R ++ V + SG T++L Sbjct: 523 LDVIPTVSKDNIRLGINLNLQDITGFTNTNVAGQTVPIPITTDRVLNSEVVVKSGQTVIL 582 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429 GL+ ++ + GIP+L IP+LG LF+ +++ +FI TP+++K P + +++ Sbjct: 583 GGLVSNNTIKNISGIPILQDIPVLGNLFKYQNRENKKSTLFIFITPYIIKSPDQLAKITK 642 Query: 430 PDD 432 ++ Sbjct: 643 ANE 645 >gi|134096276|ref|YP_001101351.1| fimbrial assembly protein PilQ [Herminiimonas arsenicoxydans] gi|133740179|emb|CAL63230.1| Putative type IV pilus biogenesis secretin PilQ [Herminiimonas arsenicoxydans] Length = 697 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ +SS GATSV+ + L T Sbjct: 534 LSALEADGKGKIISSPRVITADQLKALIEQGTELPYQQATSS-GATSVSFRKANLRLEVT 592 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ +GV + + T V + +GGT+V+ G+ + + Sbjct: 593 PQITPDGNVILDV--DVNKDSVGVETRSGFAIDTKHVKTQVLIDNGGTVVIGGIFQQTER 650 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +P IP+LG LF+ + ++TE+ I TP Sbjct: 651 DSVSKVPFFGDIPVLGNLFKTTGRTNDKTELLIFLTP 687 >gi|94266027|ref|ZP_01289748.1| type II and III secretion system protein [delta proteobacterium MLMS-1] gi|93453422|gb|EAT03844.1| type II and III secretion system protein [delta proteobacterium MLMS-1] Length = 577 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 16/180 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--- 312 FE +L A+E L+ P ++ ++GQ A G Y +SST TH+ Sbjct: 398 FELLLEAIETQGETNVLSNPRISIMNGQPALINVGETVRYIAEASSTIQDQGVTHNIITG 457 Query: 313 ----GVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD-----MPSYRVRKADTT 359 G+ + P ++ I L + ++ P+ GD +P +R+ T Sbjct: 458 TVMSGLSMSVLPIIVDDNEIILSMTPMTTQLAPGPIPREKFGDNMLVQLPQINIREMQTM 517 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + +G T+++ GL+ + + +PLL IP LG LFR+ ++E+ E+ I P ++ Sbjct: 518 VRVANGDTLMIGGLIDEYETTESKRVPLLGDIPGLGKLFRHDTRSKEKKELVIMLRPRIL 577 >gi|237703055|ref|ZP_04533536.1| general secretion pathway protein D [Escherichia sp. 3_2_53FAA] gi|226902319|gb|EEH88578.1| general secretion pathway protein D [Escherichia sp. 3_2_53FAA] Length = 654 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTVIRD----DDVY 604 >gi|167721530|ref|ZP_02404766.1| type II/III secretion system protein [Burkholderia pseudomallei DM98] gi|167817709|ref|ZP_02449389.1| type II/III secretion system protein [Burkholderia pseudomallei 91] Length = 454 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ G + V + L Sbjct: 295 LSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQA-KVGNGVSGVQFRRATLKLEVE 353 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + GR+ L + +V++ +G P+ + T VE+ +GGT+ + G+ + D + Sbjct: 354 PQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDR 411 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 412 DDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 451 >gi|332524328|ref|ZP_08400549.1| fimbrial biogenesis protein [Rubrivivax benzoatilyticus JA2] gi|332107658|gb|EGJ08882.1| fimbrial biogenesis protein [Rubrivivax benzoatilyticus JA2] Length = 719 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 89/354 (25%), Positives = 150/354 (42%), Gaps = 36/354 (10%) Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM-TLRRFIAD 133 TKA+VV L G+N GQ+ G IL R E T + F++D Sbjct: 386 TKAEVVAKG-----LLGQNQGQS--------GGSSHASRILSPRGSVIFETRTNQLFVSD 432 Query: 134 SNIRVEMVSDTVV-LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----KVMNLL 188 ++E ++ + + VR + R VE +TF G AN++ K + + Sbjct: 433 IPSKLEEITQLIAKIDIPVRQVMIEARIVEADDTFGRALGVKLGANAAPKFYNNGGVGVG 492 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV- 247 D V + +LK GF T + P+ +++F G V+ F+V Sbjct: 493 VGGNYDDVGYQTG------QLLKDPGFNS--TQFVNLPANISSSNFSG--VTSAPTFAVS 542 Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 L RF L ALE + ++ P + + Q + G+ L S+S+GAT Sbjct: 543 LFNSSLTRF-LNLELSALEADGKGKIVSSPRVIT-ADQEKALIEQGEELPYQESTSSGAT 600 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 S++ + L TP + G + L + +V++ +G + + + T V + +G Sbjct: 601 SISFRKASLKLEVTPQITPEGNVILDV--DVNKDSVGRSTAAGFAIDTKHVKTKVLVENG 658 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GT+V+ G+ +PLL IP LG LFR++ +TE+ + TP +V Sbjct: 659 GTVVIGGIYTQSESTDVSKVPLLGDIPGLGVLFRSTTRTSSKTELLVFLTPKIV 712 >gi|218886129|ref|YP_002435450.1| type II and III secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757083|gb|ACL07982.1| type II and III secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 552 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 11/192 (5%) Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 KS A G F + GG+ E L AL+ ++ I L+ P+++ + Q A + Sbjct: 337 KSGAGSLGLMFGTIGGNM----------LEMQLSALQESSKINILSSPSISTLDNQMA-Y 385 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 T G+ + +++ G V D + L TP V+ + L++ + E + Sbjct: 386 TENGEKVPYVSTNAQGDREVKFEDAVLRLEITPHVIDDKNLKLKVLVKKDEVDLTRTVEG 445 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P ++ +TT+ + G TIV++GL KD + G+P L + LG LF + + Sbjct: 446 NPFIIKKQTETTLIVQDGETIVISGLTKDRKSTGRSGVPGLHDVEGLGWLFGSDSKASKL 505 Query: 408 TEIFIAATPFLV 419 E+ I TP ++ Sbjct: 506 EEVLIFITPAVL 517 >gi|77163786|ref|YP_342311.1| fimbrial assembly protein pilQ precursor [Nitrosococcus oceani ATCC 19707] gi|254435512|ref|ZP_05049019.1| type IV pilus secretin PilQ subfamily, putative [Nitrosococcus oceani AFC27] gi|76882100|gb|ABA56781.1| Fimbrial assembly protein pilQ precursor [Nitrosococcus oceani ATCC 19707] gi|207088623|gb|EDZ65895.1| type IV pilus secretin PilQ subfamily, putative [Nitrosococcus oceani AFC27] Length = 699 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 4/141 (2%) Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 S Q + G + +SS+GATSV+ + L TP + RI + + V++ Sbjct: 557 SNQKEAIIEQGTEIPYQRASSSGATSVSFKKAVLSLTVTPQITPDDRIIMDLG--VTKDS 614 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +G +PS RK T V + +G T+VL G+ + + + IP L +P G LFR+ Sbjct: 615 VGKVFNGVPSINTRKVATQVLVNNGQTVVLGGIYEQEKNRAVRRIPFLGDLPYAGILFRD 674 Query: 401 -SRFNREETEIFIAATPFLVK 420 S FN + E+ I TP ++K Sbjct: 675 KSEFNNKR-ELLIFVTPKIIK 694 >gi|187930316|ref|YP_001900803.1| type IV pilus secretin PilQ [Ralstonia pickettii 12J] gi|187727206|gb|ACD28371.1| type IV pilus secretin PilQ [Ralstonia pickettii 12J] Length = 721 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 3/157 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ +SS GATSV+ + L T Sbjct: 558 LSALEADGRGKIVSSPRVVTADNIKALIEQGTEIPYQQATSS-GATSVSFKKANLKLEVT 616 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G I L + +V++ +G+ + + + T V + +GGT+V+ G+ + + Sbjct: 617 PKITPDGNIFLDV--DVNKDSVGIQTTNGFAIDTKHVQTQVLVENGGTVVIGGIYTQNER 674 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +PLL IP+LG LF+++ TE+ + TP Sbjct: 675 TDINKVPLLGDIPVLGNLFKSTSKINNRTELLVFLTP 711 >gi|108810017|ref|YP_653933.1| type III secretion protein [Yersinia pestis Antiqua] gi|108813572|ref|YP_649339.1| type III secretion protein [Yersinia pestis Nepal516] gi|145600961|ref|YP_001165037.1| type III secretion protein [Yersinia pestis Pestoides F] gi|165936434|ref|ZP_02225002.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. IP275] gi|166010446|ref|ZP_02231344.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. E1979001] gi|166213955|ref|ZP_02239990.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. B42003004] gi|167419179|ref|ZP_02310932.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426134|ref|ZP_02317887.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469427|ref|ZP_02334131.1| possible type III secretion protein [Yersinia pestis FV-1] gi|270488950|ref|ZP_06206024.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis KIM D27] gi|108777220|gb|ABG19739.1| type III secretion protein [Yersinia pestis Nepal516] gi|108781930|gb|ABG15988.1| type III secretion protein [Yersinia pestis Antiqua] gi|145212657|gb|ABP42064.1| type III secretion protein [Yersinia pestis Pestoides F] gi|165915550|gb|EDR34159.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. IP275] gi|165990536|gb|EDR42837.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204930|gb|EDR49410.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. B42003004] gi|166963173|gb|EDR59194.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167054845|gb|EDR64647.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270337454|gb|EFA48231.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis KIM D27] Length = 505 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 28/220 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ + VTI +V + Q+G S + S G SF + F K +EG FS + D Sbjct: 279 QIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA-KNNAEG--FSTV-IGDTG 334 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +F L+AL++ + R L++P++ ++ A K T G Sbjct: 335 NFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKLQGEKVAKLESVTS--GS 392 Query: 315 VLHFTPTVLSPGRIGLRIQTE-VSEPVIGVNAGD------------MPSYRVRKADTTVE 361 +L TP + I+TE V E ++ +N D +P R T Sbjct: 393 LLRVTPRM---------IETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQAT 443 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 L G +++L G ++D + + IPLL IP+LG LFR++ Sbjct: 444 LQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRST 483 >gi|15596579|ref|NP_250073.1| type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|9947326|gb|AAG04771.1|AE004567_10 probable type II secretion system protein [Pseudomonas aeruginosa PAO1] Length = 759 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 17/178 (9%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATS----VTTH 310 + A+ +R LA P + SG+ A+ G T S++ G+T+ + Sbjct: 550 IQAMADNQRVRVLATPRILVKSGEQANINVGRDIPIPTAQVNDDSTTAGSTNLRNEIAYR 609 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYRVRKADTTVEL 362 G +L+ P V S R+ L + E+S+ G P +T++ L Sbjct: 610 STGTILNVAPVVYSDSRVDLTVSQELSDSGGSSGGGGKASGGGISAPEISRTSLETSLTL 669 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 SGG++++ GL++D+I G+PLL IP +G LF + + E+ + P++++ Sbjct: 670 KSGGSVLMGGLIRDNITDSNAGVPLLKDIPGIGFLFGRQKAVKTREEVIMLIQPYVLE 727 >gi|67641888|ref|ZP_00440653.1| type IV pilus secretin PilQ [Burkholderia mallei GB8 horse 4] gi|121600460|ref|YP_994488.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|126439652|ref|YP_001060705.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 668] gi|126450056|ref|YP_001082319.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|226198301|ref|ZP_03793872.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pakistan 9] gi|251767786|ref|ZP_02268424.2| type IV pilus secretin PilQ [Burkholderia mallei PRL-20] gi|254174977|ref|ZP_04881638.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|254206684|ref|ZP_04913035.1| type IV pilus secretin PilQ [Burkholderia mallei JHU] gi|121229270|gb|ABM51788.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|126219145|gb|ABN82651.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 668] gi|126242926|gb|ABO06019.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|147752226|gb|EDK59292.1| type IV pilus secretin PilQ [Burkholderia mallei JHU] gi|160696022|gb|EDP85992.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|225929821|gb|EEH25837.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pakistan 9] gi|238522900|gb|EEP86342.1| type IV pilus secretin PilQ [Burkholderia mallei GB8 horse 4] gi|243061735|gb|EES43921.1| type IV pilus secretin PilQ [Burkholderia mallei PRL-20] Length = 462 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 333 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 390 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ Sbjct: 391 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 450 Query: 411 FIAATPFLV 419 + TP +V Sbjct: 451 VVYITPTVV 459 >gi|42527064|ref|NP_972162.1| hypothetical protein TDE1556 [Treponema denticola ATCC 35405] gi|41817488|gb|AAS12073.1| conserved domain protein [Treponema denticola ATCC 35405] Length = 400 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 270 RTLAEPTLTAISGQSASF--TSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSP 325 R LA+ TL I+G+ F T+ +++ KT+ S+ S+ G++L+ V Sbjct: 219 RVLADTTLNGITGEEVRFQNTNTFRYIDKTLDSNGKPLYGSMREITSGLLLNIKGNVSGD 278 Query: 326 GRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G I + + +VS+ GV +G +P + T V PSG I++ GLL+ + ++ Sbjct: 279 GMITMEVNAQVSKQGSGGVTSGVLPPTSEKIVKTKVRTPSGKPIIIGGLLQVEQNSSEKK 338 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 IP L IPI G F++ + TE+ I P++ Sbjct: 339 IPGLGDIPIAGLAFKDINGSETVTEMVIYIVPYI 372 >gi|325265676|ref|ZP_08132365.1| type IV pilus secretin PilQ [Kingella denitrificans ATCC 33394] gi|324982807|gb|EGC18430.1| type IV pilus secretin PilQ [Kingella denitrificans ATCC 33394] Length = 705 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 2/161 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E +T++ P + + A G Q Y T S G + + D + L T Sbjct: 537 LSAMETDNLTKTISTPRVLTQDRKEAEIRQGTQIPY-TTRGSNGEVTTSFKDAILSLKVT 595 Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + +I L I EP VN P R T + GGT+V+ G+ ++ + Sbjct: 596 PRITPDSKIILDITINKDEPDYTRVNVEGEPGITTRAVKTQAMIEDGGTLVVGGIYQEQM 655 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L IP+LG LF++ + E+ TP ++ Sbjct: 656 SNNISKVPFLGDIPVLGNLFKSRSRSHTRNELLFFITPRIM 696 >gi|254038486|ref|ZP_04872542.1| general secretion pathway protein D [Escherichia sp. 1_1_43] gi|226838992|gb|EEH71015.1| general secretion pathway protein D [Escherichia sp. 1_1_43] Length = 654 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604 >gi|152991627|ref|YP_001357348.1| type II secretion system protein D [Sulfurovum sp. NBC37-1] gi|151423488|dbj|BAF70991.1| type II secretion system protein D [Sulfurovum sp. NBC37-1] Length = 678 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/265 (23%), Positives = 109/265 (41%), Gaps = 40/265 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITG---SSSG-------------------------- 225 QV +K I E+ +++ +Q+G ++ + G +SSG Sbjct: 337 QVYVKAKIVEIDKNMAEQVGMKYGMNGGTITSSGLFTLAGNMGASALQMSPALLGFLNTN 396 Query: 226 PSKSFAADFGGKFVSEGGD-FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 +K++ G + E F F+ L LE+ A L+EP++ + + Sbjct: 397 NTKTYTDPVTGSVIQENNPAFKFDSTDKAFALGAALDLLEKNGAAHLLSEPSVLCTNNKE 456 Query: 285 ASFTSGGQH--LYKTVSSSTGATSV----TTHDYGVVLHFTPTVLSPGRIGLRIQT--EV 336 A G L + S+T ++V + D G+ L P + S ++ L ++T E Sbjct: 457 AEIYVGQTRSILTQAQQSTTAISNVINNYSREDIGLTLKVKPRLSSNNQVTLEVETVLED 516 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 +P D P+ R T + +G I+L GL+K + +P L IP+LG Sbjct: 517 IDPS-SEQVEDRPTTTKRTVKTNAIVRNGEMIILGGLIKRAGGKNISKVPFLGDIPVLGE 575 Query: 397 -LFRNSRFNREETEIFIAATPFLVK 420 LF ++ E + I TP++V+ Sbjct: 576 MLFTHTGDVEREQNVVIYLTPYIVR 600 >gi|153848715|ref|ZP_01993991.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810] gi|149744675|gb|EDM56143.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810] Length = 132 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 64/121 (52%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G+ +S+ ++ L + + V + DP D+VV ++L GK +G NV + G Sbjct: 11 GRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNELFLIGKKLGTTNVSVWDSRG 70 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + ++ + D+ L+ L +F+ D +I V + VVL G+V + Q+ AV+++ET Sbjct: 71 RLIEQFNVEVTHDLNTLKSKLFQFLPDESIEVHSAQEKVVLRGLVSSQQNMDIAVKIAET 130 Query: 167 F 167 F Sbjct: 131 F 131 >gi|296103142|ref|YP_003613288.1| general secretion pathway protein D [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057601|gb|ADF62339.1| general secretion pathway protein D [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 642 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 75/278 (26%), Positives = 122/278 (43%), Gaps = 44/278 (15%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--G 236 +S +KV++ L+I QV ++ IAEV+ +G Q TG G FG G Sbjct: 328 NSLEKVIDKLDIR-RPQVLVEAIIAEVQDGNGMDLGVQW--TGKHGG------VQFGSTG 378 Query: 237 KFVSEGGDFSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 +S+ + ++KG + +L AL + L+ P++ + + ASF Sbjct: 379 LPISQVKNGTIKGASFTGLATGFFNGDYGALLTALSTSGKNDILSTPSVVTLDNKEASFN 438 Query: 289 SGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342 G + S +T SV G L P + I L+I+ EVS + Sbjct: 439 VGQDVPVLSGSQTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDASAT 498 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +A P++ R + V + SG T+VL GL+++ +Q +PLL +P++G LF R Sbjct: 499 EDASLGPTFNTRTINNEVMVHSGQTVVLGGLMENVSKQNVSKVPLLGDLPLVGQLF---R 555 Query: 403 FNREETE-----IFIAATPFLVKPVAMRDLSRPDDHYS 435 + E+T +FI T +RD DD+YS Sbjct: 556 YTSEDTSKRNLMVFIHTT-------VLRD----DDNYS 582 >gi|83647301|ref|YP_435736.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC 2396] gi|83635344|gb|ABC31311.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC 2396] Length = 647 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/253 (23%), Positives = 116/253 (45%), Gaps = 29/253 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFV------------ 239 QV ++ I E+ + +Q+G Q + +TG S + + + G Sbjct: 345 QVLIEAAIVEISDGLSRQLGVQMAAGDLTGKSGPATVTNFTNVGISASAILAAIASNSTP 404 Query: 240 SEGGDFSVKGVLD---RFSFETVLHALERATAIRTLAEPTLTA--------ISGQSASFT 288 S GGD + + + R + ++ AL + L+ P++ I GQ+ F Sbjct: 405 SIGGDIAAVAIGEAEGRKGWGALIQALGTSGQANLLSTPSIITMDNLQSEIIVGQNVPFR 464 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGD 347 +G +S+ T++ D G+ L TP++ + L I+ E S +A D Sbjct: 465 TGQTGTGTDGTSNP-FTTIERQDVGLTLRVTPSISDGDLVRLEIEQESSSIAPSNESASD 523 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + + R+ T+V + TIVL GL+ ++ + + +PLL IP+LGALFR+++ +++ Sbjct: 524 IITNK-RQIKTSVLADNAETIVLGGLMSENYKLSEAKVPLLGDIPLLGALFRSTKREKDK 582 Query: 408 TEIFIAATPFLVK 420 + + P +++ Sbjct: 583 QNLLVFLRPTILR 595 >gi|187931580|ref|YP_001891564.1| type IV pili secretin component [Francisella tularensis subsp. mediasiatica FSC147] gi|187712489|gb|ACD30786.1| type IV pili secretin component [Francisella tularensis subsp. mediasiatica FSC147] Length = 590 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/263 (24%), Positives = 117/263 (44%), Gaps = 33/263 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224 K+V+N ++I DQV ++ I EV R ++GF + + S Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 GP+ + F G +++ G + R E + ALE + +A P L + Q Sbjct: 391 GPTPTPVDTFVGTTAKLA--YTIAGGV-RLEME--VRALESESLAEEVASPHLVVANNQV 445 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A F G+ + ++++GA +V + + L TP + G I + I V++ +G + Sbjct: 446 A-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGAS 502 Query: 345 AGDMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G P + R+ T V G T+V+ G+ + ++ + IP L IP LG L Sbjct: 503 PGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYL 562 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F ++ +++E+ I TP +++ Sbjct: 563 FSYTKITDQDSELLIFITPKIIE 585 >gi|153870872|ref|ZP_02000179.1| Bacterial type II and III secretion system protein [Beggiatoa sp. PS] gi|152072664|gb|EDN69823.1| Bacterial type II and III secretion system protein [Beggiatoa sp. PS] Length = 698 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 2/207 (0%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 GF T + G ++F + G + + + L A++ + ++ Sbjct: 491 GFSSDNTATGEGQGENFIVSLPAAIANPAAVGLAIGKIGSYLLQLELSAMQSEGSGEIIS 550 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 P + + Q A T G + Y + V + L TP + R+ + + Sbjct: 551 NPRIITGNQQEAIITQGTEIPYVQQAGVGSVAQVQFKQAVLELKVTPQITPDDRVNMELA 610 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + P GVN G S R+ T V + +G T+VL G+ + IP + +P+ Sbjct: 611 VKKDSP--GVNIGGNLSIDKREVKTNVLVDNGETVVLGGVYERTRSNAINRIPFFADLPL 668 Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420 +G LF+N + +++E+ I TP ++K Sbjct: 669 IGELFKNRSKSDDKSELLIFVTPKILK 695 >gi|323934477|gb|EGB30885.1| general secretion pathway protein D [Escherichia coli E1520] Length = 654 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604 >gi|261365347|ref|ZP_05978230.1| type IV pilus biogenesis protein PilQ [Neisseria mucosa ATCC 25996] gi|288566287|gb|EFC87847.1| type IV pilus biogenesis protein PilQ [Neisseria mucosa ATCC 25996] Length = 711 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 2/164 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + A E +T++ P + + A+ SG + Y+ SSS GATSV+ + L T Sbjct: 543 ISASEATGKSKTISNPRVLTQDRREATIESGTEIPYQEASSS-GATSVSFKKAVLGLTVT 601 Query: 320 PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P V G++ + ++ P V++ + + +T + GGT+++ G+ ++D Sbjct: 602 PNVTPDGQVIMTVKITKDTPQDCTVDSLITKCIQTKNLNTQAMVEDGGTLIVGGIYEEDN 661 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +PLL +P++G LF++ E E+ + TP ++ V Sbjct: 662 SDTINKVPLLGDLPVVGNLFKSRAKKEERRELLVFITPRIMDGV 705 >gi|153834019|ref|ZP_01986686.1| msha biogenesis protein mshl [Vibrio harveyi HY01] gi|148869663|gb|EDL68649.1| msha biogenesis protein mshl [Vibrio harveyi HY01] Length = 544 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 106/255 (41%), Gaps = 34/255 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------GKFVSEGGDF 245 QV L+ I EV Q G S +S G S S D G + GG Sbjct: 270 QVILEAKILEVTLSDGYQQGINWSNMSASIGNSGSIVVDRNPAKLPLDAIGTLL--GGQT 327 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG- 303 +V +F+ V++ + + L+ P +TA + Q + G + T +SS+ G Sbjct: 328 NV--TFSDGNFKAVMNFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGN 385 Query: 304 --------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------ 346 +T G+ L TP + + G + L + EV E + +N G Sbjct: 386 GENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQLNLGGDFQNI 445 Query: 347 DMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P + +R++D+ + G +V+ GL+K + +P L +P LG LFRN Sbjct: 446 QLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNV 505 Query: 405 REETEIFIAATPFLV 419 ++TE+ I P +V Sbjct: 506 TQKTELVILLKPTVV 520 >gi|254225450|ref|ZP_04919061.1| general secretion pathway protein D [Vibrio cholerae V51] gi|125622084|gb|EAZ50407.1| general secretion pathway protein D [Vibrio cholerae V51] Length = 675 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 21/160 (13%) Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPG 326 +T + ASF G + V TG+T+ + +D G+ L P + Sbjct: 465 ITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGN 519 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + + + +P Sbjct: 520 SVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVP 578 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LL IP+LG LFR++ E+ + + +KP +RD Sbjct: 579 LLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIRD 613 >gi|221133689|ref|ZP_03559994.1| type IV pilus secretin PilQ [Glaciecola sp. HTCC2999] Length = 473 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 33/252 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS-----SGPSKSFAADFGGKFVSEGGD----- 244 QV ++ + VR +I QIG + ITG SG S + A D + + D Sbjct: 226 QVLIESRMITVRDNIDDQIGIRWGITGQKGHLAVSG-SAAAANDIKAGIIPDISDRLNVN 284 Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + ++D + L ALE +A P +T ++ Q ++ G Sbjct: 285 LPIVNSAGRLGVQIASLMDGTILDLELSALETENKGEIIASPRIT-VANQQEAYIEQGTE 343 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSY 351 + S++ G+TSV + L P + RI L I + + G + Sbjct: 344 IPYVQSTANGSTSVAFKKAVLSLKVIPQITPDDRIILDLVITQDTRGETVSTATGPAVAI 403 Query: 352 RVRKADTTVELPSGGTIVLAGLLK----DDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 ++ T V + +G TIVL G+ + +DI + +P+L +P++G LF+N ++ Sbjct: 404 DTQEIKTQVLVENGETIVLGGIFQKISTNDIAK----VPILGNVPLVGGLFKNKVSIEQK 459 Query: 408 TEIFIAATPFLV 419 E+ I TP ++ Sbjct: 460 RELLIFVTPKII 471 >gi|121586611|ref|ZP_01676396.1| general secretion pathway protein D [Vibrio cholerae 2740-80] gi|121726696|ref|ZP_01679921.1| general secretion pathway protein D [Vibrio cholerae V52] gi|147674158|ref|YP_001218221.1| general secretion pathway protein D [Vibrio cholerae O395] gi|153212585|ref|ZP_01948332.1| general secretion pathway protein D [Vibrio cholerae 1587] gi|153802934|ref|ZP_01957520.1| general secretion pathway protein D [Vibrio cholerae MZO-3] gi|153817437|ref|ZP_01970104.1| general secretion pathway protein D [Vibrio cholerae NCTC 8457] gi|153821293|ref|ZP_01973960.1| general secretion pathway protein D [Vibrio cholerae B33] gi|153825504|ref|ZP_01978171.1| general secretion pathway protein D [Vibrio cholerae MZO-2] gi|153828338|ref|ZP_01981005.1| general secretion pathway protein D [Vibrio cholerae 623-39] gi|227082847|ref|YP_002811398.1| general secretion pathway protein D [Vibrio cholerae M66-2] gi|229507219|ref|ZP_04396724.1| general secretion pathway protein D [Vibrio cholerae BX 330286] gi|229509860|ref|ZP_04399341.1| general secretion pathway protein D [Vibrio cholerae B33] gi|229513661|ref|ZP_04403125.1| general secretion pathway protein D [Vibrio cholerae TMA 21] gi|229516981|ref|ZP_04406427.1| general secretion pathway protein D [Vibrio cholerae RC9] gi|229524711|ref|ZP_04414116.1| general secretion pathway protein D [Vibrio cholerae bv. albensis VL426] gi|229527341|ref|ZP_04416733.1| general secretion pathway protein D [Vibrio cholerae 12129(1)] gi|229606725|ref|YP_002877373.1| general secretion pathway protein D [Vibrio cholerae MJ-1236] gi|254285928|ref|ZP_04960890.1| general secretion pathway protein D [Vibrio cholerae AM-19226] gi|254851270|ref|ZP_05240620.1| general secretion pathway protein D [Vibrio cholerae MO10] gi|255744309|ref|ZP_05418261.1| general secretion pathway protein D [Vibrio cholera CIRS 101] gi|262158581|ref|ZP_06029696.1| general secretion pathway protein D [Vibrio cholerae INDRE 91/1] gi|262170026|ref|ZP_06037715.1| general secretion pathway protein D [Vibrio cholerae RC27] gi|298500452|ref|ZP_07010256.1| general secretion pathway protein D [Vibrio cholerae MAK 757] gi|11182423|sp|P45779|GSPD_VIBCH RecName: Full=General secretion pathway protein D; AltName: Full=Cholera toxin secretion protein epsD; Flags: Precursor gi|121549170|gb|EAX59203.1| general secretion pathway protein D [Vibrio cholerae 2740-80] gi|121630857|gb|EAX63239.1| general secretion pathway protein D [Vibrio cholerae V52] gi|124116456|gb|EAY35276.1| general secretion pathway protein D [Vibrio cholerae 1587] gi|124121547|gb|EAY40290.1| general secretion pathway protein D [Vibrio cholerae MZO-3] gi|126512023|gb|EAZ74617.1| general secretion pathway protein D [Vibrio cholerae NCTC 8457] gi|126521225|gb|EAZ78448.1| general secretion pathway protein D [Vibrio cholerae B33] gi|146316041|gb|ABQ20580.1| general secretion pathway protein D [Vibrio cholerae O395] gi|148876168|gb|EDL74303.1| general secretion pathway protein D [Vibrio cholerae 623-39] gi|149740789|gb|EDM54880.1| general secretion pathway protein D [Vibrio cholerae MZO-2] gi|150424110|gb|EDN16049.1| general secretion pathway protein D [Vibrio cholerae AM-19226] gi|227010735|gb|ACP06947.1| general secretion pathway protein D [Vibrio cholerae M66-2] gi|227014619|gb|ACP10829.1| general secretion pathway protein D [Vibrio cholerae O395] gi|229334973|gb|EEO00458.1| general secretion pathway protein D [Vibrio cholerae 12129(1)] gi|229338292|gb|EEO03309.1| general secretion pathway protein D [Vibrio cholerae bv. albensis VL426] gi|229346044|gb|EEO11016.1| general secretion pathway protein D [Vibrio cholerae RC9] gi|229349538|gb|EEO14494.1| general secretion pathway protein D [Vibrio cholerae TMA 21] gi|229353334|gb|EEO18273.1| general secretion pathway protein D [Vibrio cholerae B33] gi|229354724|gb|EEO19645.1| general secretion pathway protein D [Vibrio cholerae BX 330286] gi|229369380|gb|ACQ59803.1| general secretion pathway protein D [Vibrio cholerae MJ-1236] gi|254846975|gb|EET25389.1| general secretion pathway protein D [Vibrio cholerae MO10] gi|255737834|gb|EET93227.1| general secretion pathway protein D [Vibrio cholera CIRS 101] gi|262021434|gb|EEY40146.1| general secretion pathway protein D [Vibrio cholerae RC27] gi|262029742|gb|EEY48391.1| general secretion pathway protein D [Vibrio cholerae INDRE 91/1] gi|297540621|gb|EFH76678.1| general secretion pathway protein D [Vibrio cholerae MAK 757] gi|327485201|gb|AEA79608.1| General secretion pathway protein D [Vibrio cholerae LMA3894-4] Length = 674 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 21/160 (13%) Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPG 326 +T + ASF G + V TG+T+ + +D G+ L P + Sbjct: 464 ITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGN 518 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + + + +P Sbjct: 519 SVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVP 577 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LL IP+LG LFR++ E+ + + +KP +RD Sbjct: 578 LLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIRD 612 >gi|153947838|ref|YP_001402784.1| YscC/HrcC family type III secretion outer membrane protein [Yersinia pseudotuberculosis IP 31758] gi|170026130|ref|YP_001722635.1| YscC/HrcC family type III secretion outer membrane protein [Yersinia pseudotuberculosis YPIII] gi|186893670|ref|YP_001870782.1| YscC/HrcC family type III secretion outer membrane protein [Yersinia pseudotuberculosis PB1/+] gi|152959333|gb|ABS46794.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pseudotuberculosis IP 31758] gi|169752664|gb|ACA70182.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pseudotuberculosis YPIII] gi|186696696|gb|ACC87325.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pseudotuberculosis PB1/+] Length = 505 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 28/220 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ + VTI +V + Q+G S + S G SF + F K +EG FS + D Sbjct: 279 QIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA-KNNAEG--FSTV-IGDTG 334 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +F L+AL++ + R L++P++ ++ A K T G Sbjct: 335 NFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKLQGEKVAKLESVTS--GS 392 Query: 315 VLHFTPTVLSPGRIGLRIQTE-VSEPVIGVNAGD------------MPSYRVRKADTTVE 361 +L TP + I+TE V E ++ +N D +P R T Sbjct: 393 LLRVTPRM---------IETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQAT 443 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 L G +++L G ++D + + IPLL IP+LG LFR++ Sbjct: 444 LQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRST 483 >gi|329900875|ref|ZP_08272624.1| General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) [Oxalobacteraceae bacterium IMCC9480] gi|327549348|gb|EGF33919.1| General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) [Oxalobacteraceae bacterium IMCC9480] Length = 696 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 69/274 (25%), Positives = 116/274 (42%), Gaps = 38/274 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH-SITGSSS-----GPSKSF---------AADFGGKFV 239 QV ++ I EV + G Q ++G+S+ G + +F AA G Sbjct: 369 QVYIESLIVEVSAKKAAEFGIQWLGLSGNSTSNYRVGAASTFSTDNIAGLAAASKAGTIP 428 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERA----TAIRTLAEPTLTA--------ISGQSASF 287 + G ++ GV + + L AL RA L+ P L I GQ+ F Sbjct: 429 AVGAGLTL-GVFRQINGALGLGALARALESDDGTNILSMPNLITLDNEEARIIVGQNVPF 487 Query: 288 TSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 +G Y T +S G+ +V D G+ L P + G + + I E S Sbjct: 488 ITG---QYTTQASGGGSGVNPFQTVERKDVGLQLRVRPQISEGGTVKMAIYQETSAVQSS 544 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 N + + + R DT V + G +VL GL++D ++ E +P L +P++G LF+ + Sbjct: 545 TNTAGIITSK-RSIDTNVLVDDGQIVVLGGLIEDTLEDGNERVPGLGDLPVVGNLFKYQK 603 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 NR +T + + P +++ + LS D Y + Sbjct: 604 RNRTKTNLMVFLRPTIIRS-NEQSLSLSGDRYDL 636 >gi|262190137|ref|ZP_06048422.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio cholerae CT 5369-93] gi|262033978|gb|EEY52433.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio cholerae CT 5369-93] Length = 675 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 21/160 (13%) Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPG 326 +T + ASF G + V TG+T+ + +D G+ L P + Sbjct: 465 ITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGN 519 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + + + +P Sbjct: 520 SVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVP 578 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LL IP+LG LFR++ E+ + + +KP +RD Sbjct: 579 LLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIRD 613 >gi|320180160|gb|EFW55099.1| General secretion pathway protein D [Shigella boydii ATCC 9905] Length = 654 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604 >gi|282856386|ref|ZP_06265665.1| putative type IV pilus biogenesis protein PilQ [Pyramidobacter piscolens W5455] gi|282585757|gb|EFB91046.1| putative type IV pilus biogenesis protein PilQ [Pyramidobacter piscolens W5455] Length = 566 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/274 (21%), Positives = 109/274 (39%), Gaps = 33/274 (12%) Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI---------------------- 213 + ++ + LL+ G QV LK I EV D Q+ Sbjct: 289 FQQEKVRRTLRLLDAPGR-QVMLKARIIEVNDDASDQLETALNAVYDWWWGSYQNGALSA 347 Query: 214 GFQHS--ITGSSSGPSKSF--AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 GF S G++ G + +A+ G+ S G + G R + L L Sbjct: 348 GFAQSGRKPGTAEGALGNLDTSANLPGEIGS--GIVQLAGTATRM-LDFRLRTLVEQKKA 404 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 R LA+PT+T + G+ A+ + Y + + + G L TP + G I Sbjct: 405 RVLADPTVTVLDGEKATVKLVEKLKYVSRRDDAQNPTYDDEEVGPKLEVTPRIGRSGMIT 464 Query: 330 LRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + + E + + G +P R +T + + G V+ GL K+ + + +P Sbjct: 465 VSVSLATGEVIQWIRGGQGEQIPQTNSRTVETKIRVRDGEPFVIGGLFKESRSRTRASVP 524 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +LS IP++G LF+ + +++ + P++++ Sbjct: 525 ILSSIPLIGELFKAKLDKKTRSQVVMILIPYILE 558 >gi|609625|gb|AAA58785.1| EpsD [Vibrio cholerae] Length = 674 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 21/160 (13%) Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPG 326 +T + ASF G + V TG+T+ + +D G+ L P + Sbjct: 464 ITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGN 518 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + + + +P Sbjct: 519 SVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVP 577 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LL IP+LG LFR++ E+ + + +KP +RD Sbjct: 578 LLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIRD 612 >gi|217424883|ref|ZP_03456380.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 576] gi|217392339|gb|EEC32364.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 576] Length = 459 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 330 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 387 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ Sbjct: 388 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 447 Query: 411 FIAATPFLV 419 + TP +V Sbjct: 448 VVYITPTVV 456 >gi|194439979|ref|ZP_03072038.1| general secretion pathway protein D [Escherichia coli 101-1] gi|307140008|ref|ZP_07499364.1| general secretory pathway component, cryptic [Escherichia coli H736] gi|331644021|ref|ZP_08345150.1| general secretion pathway protein D [Escherichia coli H736] gi|606259|gb|AAA58122.1| ORF_o654 [Escherichia coli str. K-12 substr. MG1655] gi|194421087|gb|EDX37115.1| general secretion pathway protein D [Escherichia coli 101-1] gi|315137900|dbj|BAJ45059.1| general secretion pathway protein D [Escherichia coli DH1] gi|323959524|gb|EGB55177.1| general secretion pathway protein D [Escherichia coli H489] gi|323970129|gb|EGB65403.1| general secretion pathway protein D [Escherichia coli TA007] gi|331036315|gb|EGI08541.1| general secretion pathway protein D [Escherichia coli H736] gi|332345271|gb|AEE58605.1| general secretion pathway protein GspD [Escherichia coli UMNK88] Length = 654 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604 >gi|28199566|ref|NP_779880.1| fimbrial assembly protein [Xylella fastidiosa Temecula1] gi|182682302|ref|YP_001830462.1| type IV pilus secretin PilQ [Xylella fastidiosa M23] gi|28057681|gb|AAO29529.1| fimbrial assembly protein [Xylella fastidiosa Temecula1] gi|182632412|gb|ACB93188.1| type IV pilus secretin PilQ [Xylella fastidiosa M23] Length = 636 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 97/212 (45%), Gaps = 14/212 (6%) Query: 221 GSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 GSS+ ++ D GG + +++ G +F+ + L AL++ + ++ P Sbjct: 418 GSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLG--PKFNLDLELSALQQESRGEVISNP 475 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLR 331 + + + G + Y T++ T + + + L TPT+ + R+ L Sbjct: 476 RIVTANQREGYIKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLN 535 Query: 332 I---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + + E+ + + N G +P+ R+ +T V + G T+V+ G+ + + +P L Sbjct: 536 MTVKKDEIDQMITIANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFL 595 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P LG LF+ ++++ E+ I TP +++ Sbjct: 596 GDVPFLGNLFKKRGKDKQKAELLIFVTPKVLR 627 >gi|331684967|ref|ZP_08385553.1| general secretion pathway protein D [Escherichia coli H299] gi|331077338|gb|EGI48550.1| general secretion pathway protein D [Escherichia coli H299] Length = 654 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604 >gi|188997001|ref|YP_001931252.1| type II and III secretion system protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932068|gb|ACD66698.1| type II and III secretion system protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 602 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 24/247 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSKS---FAADFGGKF 238 Q+ ++ I +V LK +G Q ITG S S +A DF Sbjct: 356 QIAIEARIVQVSTSNLKDLGIQWGGSATNIDNNNTKIITGGGSTSVISGGRYAVDFPSSS 415 Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + G F++ G L F + L AL+ + L++P + I G++A + G + Y Sbjct: 416 ATFPGGFAIGFVFGGLQNF-LDVRLSALQSIGRSKILSKPQIVTIDGETAEISQGYEVPY 474 Query: 296 KTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 T ++ G T SV+ + L+ TP + G I + I P P + Sbjct: 475 TTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDIIITQDIPDFKNLILGNPPIQT 534 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKE-GIPLLSKIPILGALFRNSRFNREETEIFI 412 + + V G I + G+L + + LK+ G+P L IPILG LF+ + + E+ I Sbjct: 535 KTVTSKVVAKDGSVIAIGGIL-EKTEDLKDSGVPGLMNIPILGYLFKENYKQEKTNELLI 593 Query: 413 AATPFLV 419 +P +V Sbjct: 594 FLSPRIV 600 >gi|148270748|ref|YP_001245208.1| type II and III secretion system protein [Thermotoga petrophila RKU-1] gi|147736292|gb|ABQ47632.1| type II and III secretion system protein [Thermotoga petrophila RKU-1] Length = 387 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 107/227 (47%), Gaps = 18/227 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV + V + E+ RD ++G S G + F ++ G +V+ D F Sbjct: 166 QVKISVIVTEISRDYSNELGLNS--LDYSFGSGQEFNENWTATLGLVTGILNVQT--DVF 221 Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-VTTHDY 312 L LE + A+P + SG+ AS G + + + + GA S + + D Sbjct: 222 GQILAKLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQV--VLLEAEGAVSRIESIDV 279 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKAD--TTVELPSGGTIV 369 GV + P V+ + L + +VS AG+ + ++ V++ + TT+ L +G T+V Sbjct: 280 GVSIEIQPRVMDKEELELTLSPKVSH-----FAGEKLGTFAVKQNELSTTLFLKNGQTVV 334 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAA 414 ++G +D Q G+P+L+KIP++ LF + +++E IFI A Sbjct: 335 ISGATIEDSAQTGSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKA 381 >gi|94266705|ref|ZP_01290378.1| type II and III secretion system protein [delta proteobacterium MLMS-1] gi|93452646|gb|EAT03209.1| type II and III secretion system protein [delta proteobacterium MLMS-1] Length = 577 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 16/180 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--- 312 FE +L A+E L+ P ++ ++GQ A G Y +SST TH+ Sbjct: 398 FELLLDAIETQGETNVLSNPRISIMNGQPALINVGETVRYIAEASSTIQDQGVTHNIITG 457 Query: 313 ----GVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD-----MPSYRVRKADTT 359 G+ + P ++ I L + ++ P+ GD +P +R+ T Sbjct: 458 TVMSGLSMSVLPIIVDDNEIILSMTPMTTQLAPGPIPREKFGDNMLVQLPQINIREMQTM 517 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + +G T+++ GL+ + + +PLL IP LG LFR+ ++E+ E+ I P ++ Sbjct: 518 VRVANGDTLMIGGLIDEYETTESKRVPLLGDIPGLGKLFRHDTRSKEKKELVIMLRPRIL 577 >gi|332977545|gb|EGK14316.1| type IV pilus biogenesis protein PilQ [Psychrobacter sp. 1501(2011)] Length = 608 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A++ ++ P + + Q+A +SG + Y++ S G T+ + + L T Sbjct: 447 LSAMQAEGRGEVISTPKILTLDKQTAKVSSGTKIPYQS-ESEGGGTTTQFEEALLSLEVT 505 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G I L++ E P V++G + + T V + G TIVL G+ ++ I Sbjct: 506 PNITPEGEISLQLNIENGRPN-PVSSG-VILIDTDRLSTHVTVADGQTIVLGGIYRNQIF 563 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 E +P +P+LG LF+ ++ E+ I TP L++ Sbjct: 564 NNVEKVPFFGDLPLLGRLFKKDLRRNDKQELLIFVTPTLIQ 604 >gi|331674826|ref|ZP_08375583.1| general secretion pathway protein D [Escherichia coli TA280] gi|331067735|gb|EGI39133.1| general secretion pathway protein D [Escherichia coli TA280] Length = 654 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604 >gi|89110685|ref|AP_004465.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. W3110] gi|90111569|ref|NP_417784.4| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. MG1655] gi|170082844|ref|YP_001732164.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. DH10B] gi|238902416|ref|YP_002928212.1| general secretory pathway component, cryptic [Escherichia coli BW2952] gi|256025947|ref|ZP_05439812.1| general secretory pathway component, cryptic [Escherichia sp. 4_1_40B] gi|300932218|ref|ZP_07147497.1| general secretion pathway protein D [Escherichia coli MS 187-1] gi|300946547|ref|ZP_07160812.1| general secretion pathway protein D [Escherichia coli MS 116-1] gi|300954740|ref|ZP_07167173.1| general secretion pathway protein D [Escherichia coli MS 175-1] gi|301643855|ref|ZP_07243886.1| general secretion pathway protein D [Escherichia coli MS 146-1] gi|14917006|sp|P45758|GSPD_ECOLI RecName: Full=Probable general secretion pathway protein D; Flags: Precursor gi|85676716|dbj|BAE77966.1| general secretory pathway component, cryptic [Escherichia coli str. K12 substr. W3110] gi|87082242|gb|AAC76350.2| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. MG1655] gi|169890679|gb|ACB04386.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. DH10B] gi|238861291|gb|ACR63289.1| general secretory pathway component, cryptic [Escherichia coli BW2952] gi|260447656|gb|ACX38078.1| general secretion pathway protein D [Escherichia coli DH1] gi|300318291|gb|EFJ68075.1| general secretion pathway protein D [Escherichia coli MS 175-1] gi|300453793|gb|EFK17413.1| general secretion pathway protein D [Escherichia coli MS 116-1] gi|300460042|gb|EFK23535.1| general secretion pathway protein D [Escherichia coli MS 187-1] gi|301077758|gb|EFK92564.1| general secretion pathway protein D [Escherichia coli MS 146-1] gi|309703737|emb|CBJ03078.1| probable general secretion pathway protein D precursor [Escherichia coli ETEC H10407] gi|315618942|gb|EFU99525.1| general secretion pathway protein D [Escherichia coli 3431] Length = 650 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 560 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600 >gi|145300643|ref|YP_001143484.1| general secretion pathway protein D [Aeromonas salmonicida subsp. salmonicida A449] gi|1170051|sp|P45778|GSPD_AERSA RecName: Full=General secretion pathway protein D; Flags: Precursor gi|516351|emb|CAA56668.1| ExeD [Aeromonas salmonicida] gi|142853415|gb|ABO91736.1| general secretion pathway protein D [Aeromonas salmonicida subsp. salmonicida A449] Length = 678 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 31/189 (16%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--------------HLYKTVSS 300 ++ ++ AL +T L+ P++ + + ASF G + ++ T+ Sbjct: 428 NWAALVTALSTSTKSDILSTPSIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIER 487 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DM-PSYRVRKAD 357 T T +T TP + + L I+ EVS G D+ P++ R Sbjct: 488 KTVGTKLT---------VTPQINEGDSVLLNIEQEVSSVAQKQATGTADLGPTFDTRTIK 538 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 V + SG T+VL GL+ + Q+ +PLL IP+LG LFR++ + + + Sbjct: 539 NAVLVKSGETVVLGGLMDEQTQEKVSKVPLLGDIPVLGYLFRSTNNTTSKRNLMV----- 593 Query: 418 LVKPVAMRD 426 ++P +RD Sbjct: 594 FIRPTILRD 602 >gi|26249920|ref|NP_755960.1| general secretion pathway protein D [Escherichia coli CFT073] gi|91212762|ref|YP_542748.1| general secretion pathway protein D [Escherichia coli UTI89] gi|117625603|ref|YP_858926.1| putative general secretion pathway protein D precursor [Escherichia coli APEC O1] gi|227883456|ref|ZP_04001261.1| general secretion pathway protein D precursor [Escherichia coli 83972] gi|300979896|ref|ZP_07174772.1| general secretion pathway protein D [Escherichia coli MS 45-1] gi|301046096|ref|ZP_07193274.1| general secretion pathway protein D [Escherichia coli MS 185-1] gi|26110348|gb|AAN82534.1|AE016767_294 Probable general secretion pathway protein D precursor [Escherichia coli CFT073] gi|91074336|gb|ABE09217.1| probable general secretion pathway protein D [Escherichia coli UTI89] gi|115514727|gb|ABJ02802.1| putative general secretion pathway protein D precursor [Escherichia coli APEC O1] gi|227839600|gb|EEJ50066.1| general secretion pathway protein D precursor [Escherichia coli 83972] gi|294492078|gb|ADE90834.1| general secretion pathway protein D [Escherichia coli IHE3034] gi|300301922|gb|EFJ58307.1| general secretion pathway protein D [Escherichia coli MS 185-1] gi|300409407|gb|EFJ92945.1| general secretion pathway protein D [Escherichia coli MS 45-1] gi|307628360|gb|ADN72664.1| general secretory pathway component, cryptic [Escherichia coli UM146] gi|315284600|gb|EFU44045.1| general secretion pathway protein D [Escherichia coli MS 110-3] gi|315292358|gb|EFU51710.1| general secretion pathway protein D [Escherichia coli MS 153-1] gi|323950239|gb|EGB46121.1| general secretion pathway protein D [Escherichia coli H252] gi|323954552|gb|EGB50335.1| general secretion pathway protein D [Escherichia coli H263] Length = 654 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604 >gi|157162799|ref|YP_001460117.1| general secretion pathway protein D [Escherichia coli HS] gi|157068479|gb|ABV07734.1| general secretion pathway protein D [Escherichia coli HS] Length = 654 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604 >gi|306816332|ref|ZP_07450470.1| general secretory pathway component, cryptic [Escherichia coli NC101] gi|305850728|gb|EFM51185.1| general secretory pathway component, cryptic [Escherichia coli NC101] Length = 654 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604 >gi|293412744|ref|ZP_06655412.1| general secretion pathway protein D [Escherichia coli B354] gi|291468391|gb|EFF10884.1| general secretion pathway protein D [Escherichia coli B354] Length = 650 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 560 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600 >gi|110643564|ref|YP_671294.1| general secretion pathway protein D precursor [Escherichia coli 536] gi|191171536|ref|ZP_03033084.1| general secretion pathway protein D [Escherichia coli F11] gi|300974004|ref|ZP_07172411.1| general secretion pathway protein D [Escherichia coli MS 200-1] gi|331649123|ref|ZP_08350209.1| general secretion pathway protein D [Escherichia coli M605] gi|331659615|ref|ZP_08360553.1| general secretion pathway protein D [Escherichia coli TA206] gi|110345156|gb|ABG71393.1| probable general secretion pathway protein D precursor [Escherichia coli 536] gi|190908163|gb|EDV67754.1| general secretion pathway protein D [Escherichia coli F11] gi|281180360|dbj|BAI56690.1| general secretion pathway protein D [Escherichia coli SE15] gi|300309014|gb|EFJ63534.1| general secretion pathway protein D [Escherichia coli MS 200-1] gi|312947876|gb|ADR28703.1| general secretion pathway protein D precursor [Escherichia coli O83:H1 str. NRG 857C] gi|315298623|gb|EFU57878.1| general secretion pathway protein D [Escherichia coli MS 16-3] gi|324009016|gb|EGB78235.1| general secretion pathway protein D [Escherichia coli MS 57-2] gi|324014941|gb|EGB84160.1| general secretion pathway protein D [Escherichia coli MS 60-1] gi|330909367|gb|EGH37881.1| general secretion pathway protein D [Escherichia coli AA86] gi|331041621|gb|EGI13765.1| general secretion pathway protein D [Escherichia coli M605] gi|331052830|gb|EGI24863.1| general secretion pathway protein D [Escherichia coli TA206] Length = 654 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604 >gi|323939252|gb|EGB35464.1| general secretion pathway protein D [Escherichia coli E482] Length = 504 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 243 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 302 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 303 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 353 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 354 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 413 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 414 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 454 >gi|311280237|ref|YP_003942468.1| general secretion pathway protein D [Enterobacter cloacae SCF1] gi|308749432|gb|ADO49184.1| general secretion pathway protein D [Enterobacter cloacae SCF1] Length = 647 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 37/197 (18%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSST 302 F ++ AL L+ P++ + + ASF T+ G +++ TV T Sbjct: 406 FGALMTALSTDGKNDILSTPSVVTLDNKEASFNVGQDVPVLSGSQTTSGDNVFNTVERKT 465 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADT 358 G L P + I L+I+ EVS + NA + P++ R + Sbjct: 466 ---------VGTKLKIVPQINDGDMIHLKIEQEVSS--VDSNATEDASLGPTFNTRTINN 514 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + SG T+VL GL++ + +Q +PLL IP++G LFR + + + + + Sbjct: 515 EVMVHSGQTVVLGGLIESNTKQSVSKVPLLGDIPLVGQLFRYTSQDTSKRNLMV-----F 569 Query: 419 VKPVAMRDLSRPDDHYS 435 + +RD DD YS Sbjct: 570 IHTTVLRD----DDSYS 582 >gi|300918298|ref|ZP_07134902.1| general secretion pathway protein D [Escherichia coli MS 115-1] gi|300414559|gb|EFJ97869.1| general secretion pathway protein D [Escherichia coli MS 115-1] Length = 650 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 560 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600 >gi|284432099|gb|ADB84857.1| PilQ [Bdellovibrio sp. JSS] Length = 724 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 106/239 (44%), Gaps = 14/239 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGP---SKSFAADFGGKFVSEGGD 244 QV+++ I E + + IG S TG ++ GP + SF + S + Sbjct: 471 QVSIEGKIVEAKESFTRNIGVNWSATGAPIKLGSTARGPVNMNPSFNVNQSAAGSSGALN 530 Query: 245 FSVK-GVLDRFSFETVLHAL-ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F++ G LD F + AL E ++ ++ P + +S + A + + V+ + Sbjct: 531 FNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQTTEVPVRQVTQNG 590 Query: 303 GATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 AT T + L TP V + G + +++ + + + R+A+T V Sbjct: 591 TATQETFQFKPLTLKLEVTPQVTADGSVIMKVNRQFRGADVSSAGQGAFAVNSREANTRV 650 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T V+ G+ + D + G+P ++P + LF+ ++E++E+ I TP ++ Sbjct: 651 LVKNGQTAVIGGIYQSDATDGEVGVPWFRELPYVSYLFKTKNISKEKSELLIFLTPXIM 709 >gi|313667332|ref|YP_004049733.1| type II and III secretion system protein [Oceanithermus profundus DSM 14977] gi|313153963|gb|ADR37813.1| type II and III secretion system protein [Oceanithermus profundus DSM 14977] Length = 804 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 98/239 (41%), Gaps = 25/239 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 DQV +V I EV R ++G + FA ++ G D + Sbjct: 522 DQVVSRVWIQEVDRSAANELGINWQYA------TGKFAISVTEGVLTGGYDSGASAL--- 572 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--------TGAT 305 + + LE+ R L + ++ + + SGG+ L + TG T Sbjct: 573 SALAQSIRLLEKTGRSRRLLDANTLTLNAEPTTLLSGGKLLLPKQGDTGNVDGQEGTGGT 632 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-SEPVIGVNAGDM---PSYRVRKADTTVE 361 +YG+ L TP G I L I T V S P G G + SY A++ + Sbjct: 633 GYEEFNYGLNLELTPYTSPDGTITLDIATTVGSLPQSGPTPGSVLIPQSY----AESRIR 688 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++L G++ ++ + G+P+L IP++GALFR + + E + I ++K Sbjct: 689 IKDGQAVILGGVISNEDRNDVSGVPILKDIPVIGALFRTTERVQSERILLIIVQSHILK 747 >gi|218691610|ref|YP_002399822.1| general secretory pathway component, cryptic [Escherichia coli ED1a] gi|218429174|emb|CAR10129.2| general secretory pathway component, cryptic [Escherichia coli ED1a] gi|222035034|emb|CAP77777.1| general secretion pathway protein D [Escherichia coli LF82] Length = 650 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 560 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600 >gi|149189158|ref|ZP_01867445.1| fimbrial assembly protein [Vibrio shilonii AK1] gi|148836912|gb|EDL53862.1| fimbrial assembly protein [Vibrio shilonii AK1] Length = 550 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 5/163 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + +SA G + Y S+S+GAT+V + L T Sbjct: 388 LSALQSESKAEIISSPRLITTNKKSAYIEQGTEIPYLK-STSSGATAVEFKKAVLSLTVT 446 Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + R+ L + Q V E V+ G+ + ++ T V + G T+VL G+ + Sbjct: 447 PQITPDNRLILDLDVTQDRVGE-VLKTLEGETVAIDTQRIGTQVLVNDGETVVLGGIFQH 505 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +P+L IP LGALFR + N + E+ I TP ++ Sbjct: 506 AMTSKVDKVPVLGDIPGLGALFRRTYENIGKNELLIFVTPKII 548 >gi|149189065|ref|ZP_01867353.1| MSHA biogenesis protein MshL [Vibrio shilonii AK1] gi|148837028|gb|EDL53977.1| MSHA biogenesis protein MshL [Vibrio shilonii AK1] Length = 538 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 19/183 (10%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA---------T 305 FE VL + + L+ P +TA + Q + G + T +S+ G+ Sbjct: 333 FEAVLSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTDISTVIGSGENANVAPQV 392 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNA-GD-----MPSYRVRKA 356 +T G+ L TP + G + L + EV E + GD + +R++ Sbjct: 393 ELTPFFSGISLDVTPQIDEKGNVLLHVHPAVIEVQEEKKEIEVLGDSIIVPLAKSSIRES 452 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 D+ + G +V+ GL+K ++ +P L IP LG LFRN++ E+TE+ I P Sbjct: 453 DSVIRAADGDVVVIGGLMKSATTEMVSKVPYLGDIPALGHLFRNTQNVTEKTELVILLRP 512 Query: 417 FLV 419 +V Sbjct: 513 TVV 515 >gi|170018439|ref|YP_001723393.1| general secretion pathway protein D [Escherichia coli ATCC 8739] gi|188495544|ref|ZP_03002814.1| general secretion pathway protein D [Escherichia coli 53638] gi|169753367|gb|ACA76066.1| general secretion pathway protein D [Escherichia coli ATCC 8739] gi|188490743|gb|EDU65846.1| general secretion pathway protein D [Escherichia coli 53638] Length = 654 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 393 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604 >gi|15640429|ref|NP_230056.1| MSHA biogenesis protein MshL [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587598|ref|ZP_01677363.1| MSHA biogenesis protein MshL [Vibrio cholerae 2740-80] gi|121727263|ref|ZP_01680422.1| MSHA biogenesis protein MshL [Vibrio cholerae V52] gi|147674773|ref|YP_001218670.1| MSHA biogenesis protein MshL [Vibrio cholerae O395] gi|153802215|ref|ZP_01956801.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-3] gi|153818263|ref|ZP_01970930.1| MSHA biogenesis protein MshL [Vibrio cholerae NCTC 8457] gi|153822274|ref|ZP_01974941.1| MSHA biogenesis protein MshL [Vibrio cholerae B33] gi|227080613|ref|YP_002809164.1| MSHA biogenesis protein MshL [Vibrio cholerae M66-2] gi|229507042|ref|ZP_04396548.1| MSHA biogenesis protein MshL [Vibrio cholerae BX 330286] gi|229508803|ref|ZP_04398295.1| MSHA biogenesis protein MshL [Vibrio cholerae B33] gi|229519791|ref|ZP_04409234.1| MSHA biogenesis protein MshL [Vibrio cholerae RC9] gi|229606316|ref|YP_002876964.1| MSHA biogenesis protein MshL [Vibrio cholerae MJ-1236] gi|254226017|ref|ZP_04919617.1| MSHA biogenesis protein MshL [Vibrio cholerae V51] gi|254850634|ref|ZP_05239984.1| MSHA biogenesis protein MshL [Vibrio cholerae MO10] gi|255743787|ref|ZP_05417744.1| MSHA biogenesis protein MshL [Vibrio cholera CIRS 101] gi|262153600|ref|ZP_06028728.1| MSHA biogenesis protein MshL [Vibrio cholerae INDRE 91/1] gi|262167634|ref|ZP_06035338.1| MSHA biogenesis protein MshL [Vibrio cholerae RC27] gi|298501065|ref|ZP_07010866.1| MSHA biogenesis protein MshL [Vibrio cholerae MAK 757] gi|9654823|gb|AAF93575.1| MSHA biogenesis protein MshL [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548171|gb|EAX58243.1| MSHA biogenesis protein MshL [Vibrio cholerae 2740-80] gi|121630382|gb|EAX62777.1| MSHA biogenesis protein MshL [Vibrio cholerae V52] gi|124122239|gb|EAY40982.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-3] gi|125621473|gb|EAZ49807.1| MSHA biogenesis protein MshL [Vibrio cholerae V51] gi|126511222|gb|EAZ73816.1| MSHA biogenesis protein MshL [Vibrio cholerae NCTC 8457] gi|126520230|gb|EAZ77453.1| MSHA biogenesis protein MshL [Vibrio cholerae B33] gi|146316656|gb|ABQ21195.1| MSHA biogenesis protein MshL [Vibrio cholerae O395] gi|227008501|gb|ACP04713.1| MSHA biogenesis protein MshL [Vibrio cholerae M66-2] gi|227012257|gb|ACP08467.1| MSHA biogenesis protein MshL [Vibrio cholerae O395] gi|229344480|gb|EEO09455.1| MSHA biogenesis protein MshL [Vibrio cholerae RC9] gi|229354206|gb|EEO19137.1| MSHA biogenesis protein MshL [Vibrio cholerae B33] gi|229355787|gb|EEO20707.1| MSHA biogenesis protein MshL [Vibrio cholerae BX 330286] gi|229368971|gb|ACQ59394.1| MSHA biogenesis protein MshL [Vibrio cholerae MJ-1236] gi|254846339|gb|EET24753.1| MSHA biogenesis protein MshL [Vibrio cholerae MO10] gi|255738536|gb|EET93924.1| MSHA biogenesis protein MshL [Vibrio cholera CIRS 101] gi|262023970|gb|EEY42667.1| MSHA biogenesis protein MshL [Vibrio cholerae RC27] gi|262030627|gb|EEY49263.1| MSHA biogenesis protein MshL [Vibrio cholerae INDRE 91/1] gi|297540313|gb|EFH76373.1| MSHA biogenesis protein MshL [Vibrio cholerae MAK 757] Length = 559 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 106/261 (40%), Gaps = 38/261 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-----SKSFAADFGGKFVSE-------- 241 QV L+ I EV Q G S SS+G S S D G ++ Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPGLDAI 336 Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 GG +V V+ SF+ V+ + + L+ P +TA + Q A G Y T Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394 Query: 298 VSSS---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340 SS TG + + D G+ L TP + G + L + V E + Sbjct: 395 DLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454 Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 ++P R +R++D+ + G +V+ GL+K + +P L +P LG LF Sbjct: 455 YRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514 Query: 399 RNSRFNREETEIFIAATPFLV 419 RN+ ++TE+ I P +V Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535 >gi|153802182|ref|ZP_01956768.1| general secretion pathway protein D [Vibrio cholerae MZO-3] gi|124122256|gb|EAY40999.1| general secretion pathway protein D [Vibrio cholerae MZO-3] Length = 404 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 21/160 (13%) Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGVVLHFTPTVLSPG 326 +T + ASF G + V TG+T+ + +D G+ L P + Sbjct: 194 ITVMDNGEASFIVG-----EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGN 248 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + + + +P Sbjct: 249 SVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVP 307 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LL IP+LG LFR++ E+ + + +KP +RD Sbjct: 308 LLGDIPLLGQLFRSTSSQVEKKNLMV-----FIKPTIIRD 342 >gi|301021125|ref|ZP_07185165.1| general secretion pathway protein D [Escherichia coli MS 196-1] gi|299881655|gb|EFI89866.1| general secretion pathway protein D [Escherichia coli MS 196-1] Length = 654 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 393 AAQGVADYKKNGGLTSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 452 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 453 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 503 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 504 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 563 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 564 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 604 >gi|254163253|ref|YP_003046361.1| general secretory pathway component, cryptic [Escherichia coli B str. REL606] gi|253975154|gb|ACT40825.1| general secretory pathway component, cryptic [Escherichia coli B str. REL606] Length = 650 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 560 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600 >gi|157146468|ref|YP_001453787.1| hypothetical protein CKO_02228 [Citrobacter koseri ATCC BAA-895] gi|157083673|gb|ABV13351.1| hypothetical protein CKO_02228 [Citrobacter koseri ATCC BAA-895] Length = 640 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 124/294 (42%), Gaps = 64/294 (21%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--G 236 +S +KV++ L+I QV ++ IAEV+ +G Q + SK FG G Sbjct: 328 NSLEKVIDKLDIR-RPQVLVEAIIAEVQDGAGTDLGVQWT--------SKHGGVQFGATG 378 Query: 237 KFVSEGGDFSVKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQSAS 286 + + + ++KGV F+ F ++ AL L+ P++ + + AS Sbjct: 379 LPIGQVKNGTIKGV--NFTGMATGFFNGDFGALMTALSTNGKNDILSTPSVVTLDNKEAS 436 Query: 287 F-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 F T+ G +++ TV T G L P + I ++I+ Sbjct: 437 FNVGQDVPVLSGSQTTTGDNVFNTVERKT---------VGTKLKILPQINDGDMIHMKIE 487 Query: 334 TEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 EVS V+A P++ R + V + SG T+VL GL+++ +Q +PL Sbjct: 488 QEVSS----VDASSTEDSSLGPTFNTRTINNEVMVHSGQTVVLGGLIENVTKQNVSKVPL 543 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 L IP++G LFR + + + + + + +RD DD+YS K Sbjct: 544 LGDIPLVGQLFRYTSQDTTKRNLMV-----FIHTTVLRD----DDNYSAASKEK 588 >gi|327483259|gb|AEA77666.1| MSHA biogenesis protein MshL [Vibrio cholerae LMA3894-4] Length = 559 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 106/261 (40%), Gaps = 38/261 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-----SKSFAADFGGKFVSE-------- 241 QV L+ I EV Q G S SS+G S S D G ++ Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPGLDAI 336 Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 GG +V V+ SF+ V+ + + L+ P +TA + Q A G Y T Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394 Query: 298 VSSS---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340 SS TG + + D G+ L TP + G + L + V E + Sbjct: 395 DLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454 Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 ++P R +R++D+ + G +V+ GL+K + +P L +P LG LF Sbjct: 455 YRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514 Query: 399 RNSRFNREETEIFIAATPFLV 419 RN+ ++TE+ I P +V Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535 >gi|134302144|ref|YP_001122113.1| type IV pilus secretin/type II and III secretion system protein [Francisella tularensis subsp. tularensis WY96-3418] gi|134049921|gb|ABO46992.1| type IV pilus secretin/type II and III secretion system protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 590 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 64/263 (24%), Positives = 117/263 (44%), Gaps = 33/263 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224 K+V+N ++I DQV ++ I EV R ++GF + + S Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 GP+ + F G +++ G + R E + ALE + +A P L + Q Sbjct: 391 GPTPTPVDTFVGTTAKLA--YTIAGGV-RLEME--VRALESESLAEEVASPHLVVANNQV 445 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A F G+ + ++++GA +V + + L TP + G I + I V++ +G + Sbjct: 446 A-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGAS 502 Query: 345 AGDMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G P + R+ T V G T+V+ G+ + ++ + IP L IP LG L Sbjct: 503 PGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYL 562 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F ++ +++E+ I TP +++ Sbjct: 563 FSYTKITDQDSELLIFITPKIIE 585 >gi|218560386|ref|YP_002393299.1| general secretory pathway component, cryptic [Escherichia coli S88] gi|218367155|emb|CAR04929.1| general secretory pathway component, cryptic [Escherichia coli S88] gi|307555412|gb|ADN48187.1| general secretory pathway component [Escherichia coli ABU 83972] Length = 650 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 560 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600 >gi|332085659|gb|EGI90823.1| putative general secretion pathway protein D domain protein [Shigella dysenteriae 155-74] Length = 303 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 31/192 (16%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSST 302 + +L AL LA P++ + + ASF T+ G +++ TV T Sbjct: 80 WGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT 139 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 G L TP V + L I+ EVS N+ P++ R V + Sbjct: 140 ---------VGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLV 190 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +G T+VL GLL D ++ +PLL IP++G LFR + R + + + ++P Sbjct: 191 KTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPT 245 Query: 423 AMRDLSRPDDHY 434 +RD DD Y Sbjct: 246 IIRD----DDVY 253 >gi|300903573|ref|ZP_07121495.1| general secretion pathway protein D [Escherichia coli MS 84-1] gi|301305534|ref|ZP_07211626.1| general secretion pathway protein D [Escherichia coli MS 124-1] gi|300404446|gb|EFJ87984.1| general secretion pathway protein D [Escherichia coli MS 84-1] gi|300839229|gb|EFK66989.1| general secretion pathway protein D [Escherichia coli MS 124-1] gi|315255908|gb|EFU35876.1| general secretion pathway protein D [Escherichia coli MS 85-1] Length = 650 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 560 VPLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600 >gi|317052313|ref|YP_004113429.1| type II and III secretion system protein [Desulfurispirillum indicum S5] gi|316947397|gb|ADU66873.1| type II and III secretion system protein [Desulfurispirillum indicum S5] Length = 683 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 22/192 (11%) Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 D++V GVL+ F L L + TL+ PT+T ++ + + S + Y+ ++ + Sbjct: 290 DYTV-GVLNPGKFAGFLQFLSLHGTVHTLSNPTITTLNNVTGNVYSIRTYPYQVTTTESS 348 Query: 304 ATSVTTHDY------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRK 355 A Y GV L TP +++ G I L + PV+G P+ R+ Sbjct: 349 ANVREARTYFEDVKIGVSLTVTPNIVNNGDILLEVL-----PVVGEIYEENFNPASGERE 403 Query: 356 ADTTVELP--------SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 TVE + + + GL+ + + GIP+LS+IP+LG LFR+ R + Sbjct: 404 KPQTVEQAIRTILRTRNNHSYFIGGLIYEKNVESTSGIPVLSRIPVLGRLFRSDRRVQSR 463 Query: 408 TEIFIAATPFLV 419 E+ I TP ++ Sbjct: 464 QELVIVLTPKII 475 >gi|167041767|gb|ABZ06510.1| putative bacterial type II and III secretion system protein [uncultured marine microorganism HF4000_010L19] Length = 536 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + AL+ ++ P++ ++ Q A T G + Y+ ++ G T+ + + L T Sbjct: 380 IEALQSLGISNIISSPSVFTLNNQEAKITQGTEIAYQV--TADGTTTTEFKEAALSLVVT 437 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P+V+ G I L IQ P V D P+ + + T + + G +V+ G+ + Sbjct: 438 PSVIGDGNILLDIQVNNDSPTT-VAGSDEPAIKTNEIKTKLLVSDGDIVVIGGIKINTAT 496 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 K P +SK+P++G LF+ + + E+ I P ++ Sbjct: 497 DTKTATPGMSKLPVVGNLFKGKAVSDKMDELLIFIAPRVI 536 >gi|307578579|gb|ADN62548.1| type IV pilus secretin PilQ [Xylella fastidiosa subsp. fastidiosa GB514] Length = 581 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 97/212 (45%), Gaps = 14/212 (6%) Query: 221 GSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 GSS+ ++ D GG + +++ G +F+ + L AL++ + ++ P Sbjct: 363 GSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLG--PKFNLDLELSALQQESRGEVISNP 420 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLR 331 + + + G + Y T++ T + + + L TPT+ + R+ L Sbjct: 421 RIVTANQREGYIKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLN 480 Query: 332 I---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + + E+ + + N G +P+ R+ +T V + G T+V+ G+ + + +P L Sbjct: 481 MTVKKDEIDQMITIANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFL 540 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P LG LF+ ++++ E+ I TP +++ Sbjct: 541 GDVPFLGNLFKKRGKDKQKAELLIFVTPKVLR 572 >gi|269213782|ref|ZP_06158175.1| type IV pilus secretin PilQ [Neisseria cinerea ATCC 14685] gi|269145356|gb|EEZ71774.1| type IV pilus secretin PilQ [Neisseria cinerea ATCC 14685] Length = 327 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 3/167 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF- 318 L A E+ + +TLA P + + Q A SG + Y+ S+S T+ TT VL Sbjct: 156 LSASEQLSKTKTLANPRVLTQNRQEAKIESGTEIPYQDTSTSGNNTTTTTTFKKAVLGLV 215 Query: 319 -TPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP + G+I + ++ P+ V + + DT + +GGT+++ G+ ++ Sbjct: 216 VTPNITPDGQIIMNVKINKDTPIDCRVKNEATKCIQTKNLDTQAMVENGGTLIVGGIYEE 275 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + IPLL IP++G LF+ + N+ E+ I TP ++ V Sbjct: 276 ENGNTLTKIPLLGDIPVIGNLFKTRQNNQSRRELLIFITPRIMDTVG 322 >gi|88704159|ref|ZP_01101873.1| General secretion (type II) pathway protein D precursor [Congregibacter litoralis KT71] gi|88701210|gb|EAQ98315.1| General secretion (type II) pathway protein D precursor [Congregibacter litoralis KT71] Length = 745 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 4/162 (2%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSV---TTHDYGV 314 VL+AL + I ++ P++ + +A + G Q + + + + G SV T D GV Sbjct: 545 VLNALSEESLINVISSPSVMVLDNHTAFISVGDQVPVLQGQTITNGGNSVQNITYRDTGV 604 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L P+V + G + + I+ V + +A ++ R ++ V + S ++VL GL+ Sbjct: 605 QLSVRPSVNAGGLVTMDIEQSVIDVGSIDSATGQRAFLDRTINSRVAVRSSESVVLGGLI 664 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +++ G+P+L +IP+ G+LF + + TE+ + TP Sbjct: 665 RENSSLGDSGVPILREIPLFGSLFGTTTTDSRRTELLVIITP 706 >gi|171321858|ref|ZP_02910757.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] gi|171092856|gb|EDT38111.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] Length = 895 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 35/248 (14%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + +VTL V + EV + +G Q+ P K + GG +EG ++ +L Sbjct: 333 QSEVTLDVQVLEVNMNDSLDLGVQY--------PGKVQFSALGG---AEGAALTLGDLLR 381 Query: 252 ---DRFSFET-------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 DR + + L++ +TLA P + + + AS G + T +++ Sbjct: 382 MNRDRIGVSSESGGLALAIDMLQKRGKTKTLANPKIRVRNLEKASIKIGERVPIVTTTNA 441 Query: 302 TGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRV 353 G SV+ D G++L P + + +++ EVS + G+ A S Sbjct: 442 NGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILSKETTKTGLVAY---SLGT 498 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412 R A+T + +G T +LAGL+K + G+P +S +P+LG LF NSR N E +EI + Sbjct: 499 RNAETLMTAKNGETQILAGLVKRNESDSIAGLPGISGLPVLGRLFGSNSRSN-ERSEIVL 557 Query: 413 AATPFLVK 420 TP + + Sbjct: 558 LITPHIER 565 >gi|253996576|ref|YP_003048640.1| type II and III secretion system protein [Methylotenera mobilis JLW8] gi|253983255|gb|ACT48113.1| type II and III secretion system protein [Methylotenera mobilis JLW8] Length = 583 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 65/276 (23%), Positives = 110/276 (39%), Gaps = 48/276 (17%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------------------SSSGP 226 +NL+ ++ E QV L+ I V+ + Q G S+ G SSSG Sbjct: 271 LNLMQVSIERQVILEAKILNVQLNDQSQSGVNWSVFGRSGSNTGIVGNINANTRLSSSGN 330 Query: 227 SKSFAADFG---GKFVSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLT 278 + D G +S ++ G L +F T+L LE ++ L+ P ++ Sbjct: 331 GNLVSGDLTASTGTVLSNAATTALGGPLFAIALQGANFSTLLSFLETQGDVQVLSSPRIS 390 Query: 279 AISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDY------GVVLHFTPTVLSPGR 327 +I+ Q A G + T ++S GAT+ G+ L TP + Sbjct: 391 SINNQKAVLKVGTDEFFVTGISSNTTASVGATTTVPEVILQPFFSGITLDVTPQIDKDDN 450 Query: 328 IGLRIQTEVSEP-------VIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 I L + +S+ +G AG + S + + D+ V G IV+ GL+ + Sbjct: 451 IILHMHPSISQVSTVNKQVTLGGTAGQINLPLASSNISETDSIVRTRDGRVIVIGGLMTE 510 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 K +P L + +GA FR ++ +TE+ I Sbjct: 511 SASSTKSKVPGLGDVKGVGAAFRQQSASKTKTELVI 546 >gi|170289478|ref|YP_001739716.1| type II and III secretion system protein [Thermotoga sp. RQ2] gi|170176981|gb|ACB10033.1| type II and III secretion system protein [Thermotoga sp. RQ2] Length = 387 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 18/227 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV + V + EV +D ++G S G + F ++ G +V+ D F Sbjct: 166 QVKISVIVTEVSKDYSNELGLNS--LDYSFGSGQEFNENWSATLGLVTGLINVQT--DVF 221 Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-VTTHDY 312 L LE + A+P + SG+ AS G + + + + GA S + + D Sbjct: 222 GQILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQV--VLLQAEGAVSRIESIDV 279 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKAD--TTVELPSGGTIV 369 GV + P V+ + L + +VS AG+ + ++ V++ + TT+ L +G T+V Sbjct: 280 GVSIDIQPRVMDKEELELTLSPKVSH-----FAGEKLGTFAVKQNELSTTLFLKNGQTVV 334 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAA 414 ++G +D Q G+P+L+KIP++ LF + + +++E IFI A Sbjct: 335 ISGATIEDNAQTNSGVPILNKIPLIRYLFGGTMKKDSQKELYIFIKA 381 >gi|258627001|ref|ZP_05721799.1| MSHA biogenesis protein MshL [Vibrio mimicus VM603] gi|262172506|ref|ZP_06040184.1| MSHA biogenesis protein MshL [Vibrio mimicus MB-451] gi|258580675|gb|EEW05626.1| MSHA biogenesis protein MshL [Vibrio mimicus VM603] gi|261893582|gb|EEY39568.1| MSHA biogenesis protein MshL [Vibrio mimicus MB-451] Length = 558 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 19/189 (10%) Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATS 306 V+ SF+ V+ + + L+ P +TA + Q A G Y T SS TG + Sbjct: 346 VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNA 405 Query: 307 VTTHDY-------GVVLHFTPTVLSPGRIGLR-----IQTEVSEPVIGVNAG--DMPSYR 352 + D G+ L TP + G + L I+ E I N+ ++P R Sbjct: 406 QASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKRITYNSQQIELPLAR 465 Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++D+ + G +V+ GL+K + +P L +P LG LFRN+ ++TE+ Sbjct: 466 SSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTEL 525 Query: 411 FIAATPFLV 419 I P +V Sbjct: 526 VILLKPTVV 534 >gi|237737584|ref|ZP_04568065.1| general secretion pathway protein D [Fusobacterium mortiferum ATCC 9817] gi|229419464|gb|EEO34511.1| general secretion pathway protein D [Fusobacterium mortiferum ATCC 9817] Length = 551 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 15/168 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSSTGATSVTTHDYGV 314 ++ LE + + P++ + G+ SF G+ + ++ T+ + G+ Sbjct: 352 INLLESTQDLVVSSRPSILVLDGEEGSFKVAEEVIVGEQREEDEDTNKVITTPIFREAGI 411 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRV-------RKADTTVELPS 364 +L TPT+ G + L++ E+S + VN + +Y R +TT+++ + Sbjct: 412 ILKATPTIRKDGWVILKVLIEISNFKLKVNKDESEESGTYNSEGGSKVGRSIETTIKIKN 471 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 G TI + GL K + L IP +P++ F+N + E ++I++ Sbjct: 472 GETIFIGGLKKATVHNLDSKIPYFGTLPMINFFFKNQNISHEISDIYV 519 >gi|253987556|ref|YP_003038912.1| hypothetical protein PAU_00073 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779006|emb|CAQ82166.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 344 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 4/150 (2%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P LTA Q AS G Y VS ++V + + + TP +L +I L Sbjct: 195 IASPRLTASHQQLASIKQGSDIPY--VSQEKEKSTVQFKEAVLGMEVTPHILRKDKIRLS 252 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P I ++ G + + K + T V + +G T++L G+ + + + IP LS Sbjct: 253 LKISQNMPGISISQGGGENLTIDKQEIMTQVTVKNGETLILGGIFQQKKGEKTQKIPYLS 312 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LG+LF E+ I TP L+ Sbjct: 313 DIPLLGSLFDQKGHKHSRRELIIFITPQLM 342 >gi|167620691|ref|ZP_02389322.1| type II/III secretion system protein [Burkholderia thailandensis Bt4] Length = 572 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 443 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 500 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ Sbjct: 501 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 560 Query: 411 FIAATPFLV 419 + TP +V Sbjct: 561 VVYITPTVV 569 >gi|83720708|ref|YP_443529.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|257137686|ref|ZP_05585948.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|83654533|gb|ABC38596.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 576 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 447 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 504 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ Sbjct: 505 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 564 Query: 411 FIAATPFLV 419 + TP +V Sbjct: 565 VVYITPTVV 573 >gi|330010541|ref|ZP_08306775.1| general secretion pathway protein D [Klebsiella sp. MS 92-3] gi|328534526|gb|EGF61113.1| general secretion pathway protein D [Klebsiella sp. MS 92-3] Length = 657 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 20/219 (9%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 ++ +L AL +T LA P++ + A+F G + T S +T +V Sbjct: 420 NWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGSQTTSGDNIFNTVERK 479 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGT 367 G+ L P + + L I+ EVS ++ ++ R + V + SG T Sbjct: 480 TVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFNTRTVNNAVLVGSGET 539 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAATPFLVKPVAMR 425 +V+ GLL + + +PLL IP++GALFR + + ++ +FI +P +R Sbjct: 540 VVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLMLFI-------RPTIIR 592 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 D D Y + FN KE+SE N Sbjct: 593 D----RDEYRQASSGQYTAFNNAQTKQRGKESSEASLSN 627 >gi|258623356|ref|ZP_05718360.1| MSHA biogenesis protein MshL [Vibrio mimicus VM573] gi|258584322|gb|EEW09067.1| MSHA biogenesis protein MshL [Vibrio mimicus VM573] Length = 554 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 19/189 (10%) Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATS 306 V+ SF+ V+ + + L+ P +TA + Q A G Y T SS TG + Sbjct: 342 VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNA 401 Query: 307 VTTHDY-------GVVLHFTPTVLSPGRIGLR-----IQTEVSEPVIGVNAG--DMPSYR 352 + D G+ L TP + G + L I+ E I N+ ++P R Sbjct: 402 QASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKRITYNSQQIELPLAR 461 Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++D+ + G +V+ GL+K + +P L +P LG LFRN+ ++TE+ Sbjct: 462 SSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTEL 521 Query: 411 FIAATPFLV 419 I P +V Sbjct: 522 VILLKPTVV 530 >gi|167582578|ref|ZP_02375452.1| type II/III secretion system protein [Burkholderia thailandensis TXDOH] Length = 580 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 451 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 508 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ Sbjct: 509 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 568 Query: 411 FIAATPFLV 419 + TP +V Sbjct: 569 VVYITPTVV 577 >gi|116071978|ref|ZP_01469246.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. BL107] gi|116065601|gb|EAU71359.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. BL107] Length = 744 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 87/174 (50%), Gaps = 10/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-- 312 SF + + A+ +++ +TLA+PTL GQ A +G + +VS++ + T +Y Sbjct: 546 SFYSYVEAVIESSSAKTLAQPTLLVQEGQEAEVQTG-TSVITSVSTTDTSNGSTQFEYSR 604 Query: 313 ---GVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADTTVELPSG 365 G+ L + + G + L I E+S P + + + + + ++ L Sbjct: 605 ENAGLSLKVKVSKIDDNGFVSLNIDPEISVPEPAGESNGVAIFNIVGRSLSSGSIRLRDR 664 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L G+++D +++ P+L +P++G LFR++ R + E+ I TP +V Sbjct: 665 QTLILTGVIQDQDKEIARKWPILGDLPVIGQLFRSTDSQRSKNELVILVTPMIV 718 >gi|53724296|ref|YP_104266.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|52427719|gb|AAU48312.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] Length = 527 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 398 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 455 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ Sbjct: 456 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 515 Query: 411 FIAATPFLV 419 + TP +V Sbjct: 516 VVYITPTVV 524 >gi|262164147|ref|ZP_06031886.1| MSHA biogenesis protein MshL [Vibrio mimicus VM223] gi|262027675|gb|EEY46341.1| MSHA biogenesis protein MshL [Vibrio mimicus VM223] Length = 558 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 19/189 (10%) Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATS 306 V+ SF+ V+ + + L+ P +TA + Q A G Y T SS TG + Sbjct: 346 VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNA 405 Query: 307 VTTHDY-------GVVLHFTPTVLSPGRIGLR-----IQTEVSEPVIGVNAG--DMPSYR 352 + D G+ L TP + G + L I+ E I N+ ++P R Sbjct: 406 QASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKRITYNSQQIELPLAR 465 Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++D+ + G +V+ GL+K + +P L +P LG LFRN+ ++TE+ Sbjct: 466 SSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTEL 525 Query: 411 FIAATPFLV 419 I P +V Sbjct: 526 VILLKPTVV 534 >gi|153215373|ref|ZP_01949971.1| MSHA biogenesis protein MshL [Vibrio cholerae 1587] gi|124114744|gb|EAY33564.1| MSHA biogenesis protein MshL [Vibrio cholerae 1587] Length = 559 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 107/261 (40%), Gaps = 38/261 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSE-------- 241 QV L+ I EV Q G S SS+G S + + D G ++ Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSNGNPITSVLPGLDAI 336 Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 GG +V V+ SF+ V+ + + L+ P +TA + Q A G Y T Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394 Query: 298 VSSS---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340 SS TG + + D G+ L TP + G + L + V E + Sbjct: 395 DLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454 Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 ++P R +R++D+ + G +V+ GL+K + +P L +P LG LF Sbjct: 455 YRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514 Query: 399 RNSRFNREETEIFIAATPFLV 419 RN+ ++TE+ I P +V Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535 >gi|2897962|gb|AAC38377.1| EscC [Escherichia coli] Length = 512 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 104/227 (45%), Gaps = 39/227 (17%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 Q+ + V+I +V + L+Q+G S T G+ + S + + +S +F ++ Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQVNISSSVISNASNFMIR- 333 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307 ++AL++ + + L++P++ ++ A Y VS A+ S+ Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLRSI 382 Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGD----MPSY 351 T+ G +L TP +L R+ L IQ + ++ NA D +P Sbjct: 383 TS---GTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSTLPEV 438 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + + T L +G +++L G ++D K+GIPLLS IP++G+LF Sbjct: 439 QNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLF 485 >gi|88811950|ref|ZP_01127203.1| Fimbrial assembly protein pilQ precursor [Nitrococcus mobilis Nb-231] gi|88790834|gb|EAR21948.1| Fimbrial assembly protein pilQ precursor [Nitrococcus mobilis Nb-231] Length = 686 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 3/172 (1%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G + + + L A+E ++ P + + + A G Q ++ +SS GATSV Sbjct: 511 GKIGSYLLQLELSAMENENRGNLISTPRVITTNQKEAYIKQGVQIPFQQATSS-GATSVQ 569 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + L TP + RI L +Q NAG P+ + T V + +G TI Sbjct: 570 FKEAVLGLTVTPQITPDDRILLDLQVTKDSRGEQTNAG--PAINTQSLGTQVLVDNGETI 627 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 VL G+ + + + +P ++P+LG LFRN+ E+ I TP ++K Sbjct: 628 VLGGVYERNKNRTINRVPFFGELPLLGWLFRNTVRVDNNKELLIFVTPKILK 679 >gi|152968741|ref|YP_001333850.1| pullulanase D protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893139|ref|YP_002917873.1| pullulanase-specific type II secretion system secretin [Klebsiella pneumoniae NTUH-K2044] gi|150953590|gb|ABR75620.1| Pullulanase D protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545455|dbj|BAH61806.1| pullulanase-specific type II secretion system secretin [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 657 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 20/219 (9%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 ++ +L AL +T LA P++ + A+F G + T S +T +V Sbjct: 420 NWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGSQTTSGDNIFNTVERK 479 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGT 367 G+ L P + + L I+ EVS ++ ++ R + V + SG T Sbjct: 480 TVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFNTRTVNNAVLVGSGET 539 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAATPFLVKPVAMR 425 +V+ GLL + + +PLL IP++GALFR + + ++ +FI +P +R Sbjct: 540 VVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLMLFI-------RPTIIR 592 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 D D Y + FN KE+SE N Sbjct: 593 D----RDEYRQASSGQYTAFNNAQTKQRGKESSEASLSN 627 >gi|90020782|ref|YP_526609.1| MSHA biogenesis protein MshL [Saccharophagus degradans 2-40] gi|89950382|gb|ABD80397.1| type II and III secretion system protein [Saccharophagus degradans 2-40] Length = 543 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 25/194 (12%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----------VSSSTGATSV 307 +L LE ++ L+ P ++ ++ Q A G + T ++S + Sbjct: 337 LLSLLETQGNVQVLSSPRVSTVNNQKAVIRVGSDEFFVTGISSQTTSTAASTTSAPNIEL 396 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGDMPS--YRVRKADT 358 T+ G+ L TP + G + L + VSE +G +P VR++D+ Sbjct: 397 TSFFSGISLDVTPQIADNGDVILHVHPIVSEVTDQNKDITLGNEKFSLPLALREVRESDS 456 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V SG IVL GL+K+ + + P L +P+L LFR E+TE+ I L Sbjct: 457 IVRAQSGQIIVLGGLMKEKLNDVYSKRPGLGDVPVLNTLFRKRSKVSEKTELVI-----L 511 Query: 419 VKPVAMRDLSRPDD 432 ++P+ + D + DD Sbjct: 512 LRPIVVEDNTFADD 525 >gi|254517138|ref|ZP_05129196.1| general secretion pathway protein D [gamma proteobacterium NOR5-3] gi|219674643|gb|EED31011.1| general secretion pathway protein D [gamma proteobacterium NOR5-3] Length = 770 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 20/191 (10%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSV---TTHDYGV 314 VL+AL + I ++ P++ + A + G Q + + + + G SV T D GV Sbjct: 570 VLNALSEESLINVISTPSVMVLDNHVAFISVGDQVPVLQGQTITNGGNSVQNITYRDTGV 629 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS----YRVRKADTTVELPSGGTIVL 370 L P+V + G + + I+ + VI V A D + + R ++ V + S ++VL Sbjct: 630 QLSVRPSVNAGGLVTMDIE----QSVIDVGAIDSATGQRAFLDRTINSRVAVRSSESVVL 685 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 GL++++ G+P+L +IP+ G+LF + + TE+ + TP R L Sbjct: 686 GGLIRENSSLGDSGVPILREIPLFGSLFGTTTTDSRRTELLVIITP--------RALYNE 737 Query: 431 DDHYSVEDDAK 441 D+ +V D+ + Sbjct: 738 DELRAVSDEMR 748 >gi|15836975|ref|NP_297663.1| fimbrial assembly protein [Xylella fastidiosa 9a5c] gi|9105203|gb|AAF83183.1|AE003888_16 fimbrial assembly protein [Xylella fastidiosa 9a5c] Length = 637 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/220 (20%), Positives = 99/220 (45%), Gaps = 14/220 (6%) Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERAT 267 IG + SS+ ++ D GG + +++ G +F+ + L AL++ + Sbjct: 411 IGSHVTTADSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLG--PKFNLDLELSALQQES 468 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVL 323 ++ P + + + G + Y T++ T + + + L TPT+ Sbjct: 469 RGEVISNPRIVTANQREGYIKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTIT 528 Query: 324 SPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + R+ L + + E+ + + N G +P+ R+ +T V + G T+V+ G+ + + Sbjct: 529 NDNRVFLNMTVKKDEIDQMITIANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRN 588 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P L +P LG LF+ ++++ E+ I TP +++ Sbjct: 589 SVSKVPFLGDVPFLGNLFKKRGKDKQKAELLIFVTPKVLR 628 >gi|262401512|ref|ZP_06078079.1| MSHA biogenesis protein MshL [Vibrio sp. RC586] gi|262352227|gb|EEZ01356.1| MSHA biogenesis protein MshL [Vibrio sp. RC586] Length = 556 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 19/189 (10%) Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATS 306 V+ SF+ V+ + + L+ P +TA + Q A G Y T SS TG + Sbjct: 344 VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEFYVTDLSSVVGTGDNA 403 Query: 307 VTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYR 352 + D G+ L TP + G + L + V E V ++P R Sbjct: 404 QASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIVYRSEEIELPLAR 463 Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++D+ + G +V+ GL+K + +P L +P LG LFRN+ ++TE+ Sbjct: 464 SSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTEL 523 Query: 411 FIAATPFLV 419 I P +V Sbjct: 524 VILLKPTVV 532 >gi|254291307|ref|ZP_04962101.1| MSHA biogenesis protein MshL [Vibrio cholerae AM-19226] gi|150422763|gb|EDN14716.1| MSHA biogenesis protein MshL [Vibrio cholerae AM-19226] Length = 559 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 107/261 (40%), Gaps = 38/261 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSE-------- 241 QV L+ I EV Q G S SS+G S + + D G ++ Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGAITQDSSGNPITSVLPGLDAI 336 Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 GG +V V+ SF+ V+ + + L+ P +TA + Q A G Y T Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394 Query: 298 VSSS---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340 SS TG + + D G+ L TP + G + L + V E + Sbjct: 395 DLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454 Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 ++P R +R++D+ + G +V+ GL+K + +P L +P LG LF Sbjct: 455 YRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514 Query: 399 RNSRFNREETEIFIAATPFLV 419 RN+ ++TE+ I P +V Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535 >gi|281413054|ref|YP_003347133.1| type II and III secretion system protein [Thermotoga naphthophila RKU-10] gi|281374157|gb|ADA67719.1| type II and III secretion system protein [Thermotoga naphthophila RKU-10] Length = 387 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 107/227 (47%), Gaps = 18/227 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV + V + EV +D ++G S G + F ++ G +V+ D F Sbjct: 166 QVKISVIVTEVSKDYSNELGLNS--LDYSFGSGQEFNENWSATLGLVTGLINVQT--DVF 221 Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-VTTHDY 312 L LE + A+P + SG+ AS G + + + + GA S + + D Sbjct: 222 GQILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQV--VLLQAEGAVSRIESIDV 279 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKAD--TTVELPSGGTIV 369 GV + P V+ + L + +VS AG+ + ++ V++ + TT+ L +G T+V Sbjct: 280 GVSIDIQPRVMDKEELELTLSPKVSH-----FAGEKLGTFAVKQNELSTTLFLKNGQTVV 334 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAA 414 ++G +D Q G+P+L+KIP++ LF + +++E IFI A Sbjct: 335 ISGATIEDNAQTNSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKA 381 >gi|295096434|emb|CBK85524.1| general secretion pathway protein D [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 638 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 70/279 (25%), Positives = 120/279 (43%), Gaps = 34/279 (12%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--G 236 +S +KV++ L+I QV ++ IAEV+ +G Q + SK FG G Sbjct: 328 NSLEKVIDKLDIR-RPQVLVEAIIAEVQDGNGLDLGVQWT--------SKHGGVQFGATG 378 Query: 237 KFVSEGGDFSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 +S+ + ++KG F ++ AL L+ P++ + + ASF Sbjct: 379 LPISQIKNGTMKGASFTGLATGFFNGDFGALVTALSTDGKNDILSTPSVVTLDNKEASFN 438 Query: 289 SGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342 G + S +T SV G L P + I L+I+ EVS + Sbjct: 439 VGQDVPVLSGSQTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDNSAT 498 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++ P++ R + V + SG T+VL GL+++ +Q +PLL IP++G LFR + Sbjct: 499 EDSSLGPTFNTRTINNEVMVHSGQTVVLGGLMENVTKQSVSKVPLLGDIPLVGQLFRYTS 558 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 + + + + + +RD DD+YS K Sbjct: 559 QDTSKRNLMV-----FIHTTVLRD----DDNYSAASKEK 588 >gi|300113065|ref|YP_003759640.1| type IV pilus secretin PilQ [Nitrosococcus watsonii C-113] gi|299539002|gb|ADJ27319.1| type IV pilus secretin PilQ [Nitrosococcus watsonii C-113] Length = 699 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 4/141 (2%) Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 S Q + G + +SS+GATSV+ + L TP + RI + + V++ Sbjct: 557 SNQKEAIIEQGTEIPYQRASSSGATSVSFKKAVLSLKVTPQITPDDRIIMDLG--VTKDS 614 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +G +PS R+ T V + +G T+VL G+ + + + IP L +P G LFR+ Sbjct: 615 VGKVFAGVPSINTREVSTQVLVNNGQTVVLGGIYEQEKNRAVRRIPFLGDLPYAGILFRD 674 Query: 401 -SRFNREETEIFIAATPFLVK 420 + FN + E+ I TP ++K Sbjct: 675 KTEFNNKR-ELLIFVTPKIIK 694 >gi|332297951|ref|YP_004439873.1| type II and III secretion system protein [Treponema brennaborense DSM 12168] gi|332181054|gb|AEE16742.1| type II and III secretion system protein [Treponema brennaborense DSM 12168] Length = 667 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 8/155 (5%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGA---TSVTTHDY-GVVLHFTPTVLSP 325 + TL +SGQ +F + Y+ + TG T +T G+VL + Sbjct: 480 FTDTTLYGVSGQKITFKNTNTFRYRDSNIDPQTGKPLYTGITREIISGLVLEIDGWISGD 539 Query: 326 GRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G + + + VS+ + V+ G+ P + T V+ SG +VL+GL ++D +++ Sbjct: 540 GMVTMDVTASVSKRGVDVSTKTGNPPPTSEKIVTTQVKARSGEPVVLSGLTQNDKTFVEQ 599 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 G+P +S+IP+LG LF++ E+ E+ I P + Sbjct: 600 GVPFISRIPVLGNLFKSRDETEEKNEMVIYLVPHI 634 >gi|153825669|ref|ZP_01978336.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-2] gi|229520028|ref|ZP_04409457.1| MSHA biogenesis protein MshL [Vibrio cholerae TM 11079-80] gi|297580540|ref|ZP_06942466.1| MSHA biogenesis protein MshL [Vibrio cholerae RC385] gi|149740699|gb|EDM54806.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-2] gi|229342977|gb|EEO07966.1| MSHA biogenesis protein MshL [Vibrio cholerae TM 11079-80] gi|297534956|gb|EFH73791.1| MSHA biogenesis protein MshL [Vibrio cholerae RC385] Length = 559 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 107/261 (40%), Gaps = 38/261 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSE-------- 241 QV L+ I EV Q G S SS+G S + + D G ++ Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSSGNPITSVLPGLDAI 336 Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 GG +V V+ SF+ V+ + + L+ P +TA + Q A G Y T Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394 Query: 298 VSSS---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340 SS TG + + D G+ L TP + G + L + V E + Sbjct: 395 DLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454 Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 ++P R +R++D+ + G +V+ GL+K + +P L +P LG LF Sbjct: 455 YRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514 Query: 399 RNSRFNREETEIFIAATPFLV 419 RN+ ++TE+ I P +V Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535 >gi|262044789|ref|ZP_06017834.1| general secretion pathway protein D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037872|gb|EEW39098.1| general secretion pathway protein D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 657 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 20/214 (9%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 ++ +L AL +T LA P++ + A+F G + T S +T +V Sbjct: 420 NWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGSQTTSGDNIFNTVERK 479 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGT 367 G+ L P + + L I+ EVS ++ ++ R + V + SG T Sbjct: 480 TVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFNTRTVNNAVLVGSGET 539 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFIAATPFLVKPVAMR 425 +V+ GLL + + +PLL IP++GALFR + + ++ +FI +P +R Sbjct: 540 VVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLMLFI-------RPTIIR 592 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 D D Y + FN KE+SE Sbjct: 593 D----RDEYRQASSGQYTAFNNAQTKQRGKESSE 622 >gi|15835475|ref|NP_297234.1| general secretion pathway protein D [Chlamydia muridarum Nigg] gi|270285655|ref|ZP_06195049.1| general secretion pathway protein D [Chlamydia muridarum Nigg] gi|270289664|ref|ZP_06195966.1| general secretion pathway protein D [Chlamydia muridarum Weiss] gi|301337051|ref|ZP_07225253.1| general secretion pathway protein D [Chlamydia muridarum MopnTet14] gi|7190887|gb|AAF39657.1| general secretion pathway protein D [Chlamydia muridarum Nigg] Length = 759 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 10/190 (5%) Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +F+ +GG KG++ + F L +R A P++ ++ Q+ + + + + Sbjct: 515 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 568 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 569 AVSSEKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGKNQADRPDVTR 628 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F+ Sbjct: 629 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDATSDSQTEMFMF 688 Query: 414 ATP-FLVKPV 422 TP L PV Sbjct: 689 ITPKILDNPV 698 >gi|15643874|ref|NP_228923.1| general secretion pathway protein D, putative [Thermotoga maritima MSB8] gi|4981663|gb|AAD36193.1|AE001770_5 general secretion pathway protein D, putative [Thermotoga maritima MSB8] Length = 387 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 18/227 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV + V + EV +D ++G S G + F ++ G V+ D F Sbjct: 166 QVKISVIVTEVSKDYSNELGLNS--LDYSFGSGQEFNENWSATLGLVTGIIDVQT--DVF 221 Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-VTTHDY 312 L LE + A+P + SG+ AS G + + + + GA S + + D Sbjct: 222 GQILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQV--VLLQAEGAVSRIESIDV 279 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKAD--TTVELPSGGTIV 369 GV + P V+ + L + +VS AG+ + ++ V++ + TT+ L +G T+V Sbjct: 280 GVSIDIQPRVMDKEELELTLSPKVSH-----FAGEKLGTFAVKQNELSTTLFLKNGQTVV 334 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAA 414 ++G +D Q G+P+L+KIP++ LF + +++E IFI A Sbjct: 335 ISGATIEDSAQTSSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKA 381 >gi|225848499|ref|YP_002728662.1| PilQ [Sulfurihydrogenibium azorense Az-Fu1] gi|225643373|gb|ACN98423.1| PilQ [Sulfurihydrogenibium azorense Az-Fu1] Length = 604 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 105/249 (42%), Gaps = 24/249 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSG-------PSKSFAADF 234 Q++++ I ++ +K +G Q I G++S P ++A DF Sbjct: 354 QISIEARIVQISSKNVKDLGIQWGGLASNIDNNNTKIIAGTNSTSYLANYRPGSAYAVDF 413 Query: 235 GGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G FS+ +L + + L AL+ + L++P++ I G++A + G + Sbjct: 414 PAVQSKIPGGFSLGFILGGTQNFLDIRLSALQSIGKSKILSKPSVITIDGETAEISQGYE 473 Query: 293 HLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 Y T ++ G T SV+ + L+ TP + G I + + P P Sbjct: 474 IPYTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDLIITQDIPDFKNLLLGNPP 533 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + + + V G +V+ G+L+ G+P L IPILG LF+ + TE+ Sbjct: 534 IQTKTVTSKVVAKDGSVVVIGGILEKTEDTQTSGVPGLMNIPILGNLFKENFKQDTSTEL 593 Query: 411 FIAATPFLV 419 I +P +V Sbjct: 594 LIFLSPKIV 602 >gi|298527693|ref|ZP_07015097.1| type II and III secretion system protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511345|gb|EFI35247.1| type II and III secretion system protein [Desulfonatronospira thiodismutans ASO3-1] Length = 553 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 16/173 (9%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG-QHLYKTVSSSTGATSVTTHDY-- 312 F + ALE + ++ P + + Q A TSG ++ + ++ S AT DY Sbjct: 372 FSATIQALETFGQVSVVSNPHVRSRHLQPALVTSGTTRNFIQEITRSRRATDEDWVDYSV 431 Query: 313 -------GVVLHFTPTVLSPGRIGLRI-----QTEVSEPV-IGVNAGDMPSYRVRKADTT 359 GV+L P + G + L I Q ++SE IG + +P VR +T Sbjct: 432 NTGTAFEGVMLGVVPFITDNGDVDLDIFPITSQVDLSETAKIGGDQITLPKVNVRNVNTK 491 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 V + G T++L GL++ ++ + P S+IP LG LF+ +++ +E+ + Sbjct: 492 VRVNDGDTVILGGLIQKGSRERERATPGASRIPGLGWLFKQREDSQDLSELVV 544 >gi|238022253|ref|ZP_04602679.1| hypothetical protein GCWU000324_02160 [Kingella oralis ATCC 51147] gi|237866867|gb|EEP67909.1| hypothetical protein GCWU000324_02160 [Kingella oralis ATCC 51147] Length = 699 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 2/161 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E +T++ P + Q A G Q Y T S G+T+ + D + L Sbjct: 531 LSASEAEGRSKTISTPRVLTQDRQEAEIKQGYQVPY-TTRDSDGSTTTSFKDAVMSLKVL 589 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + +I + + P + + PS R + T + GGT+V+ G+ ++ I Sbjct: 590 PRITPDNKIIMDVTINKDTPDNTYQSSEGEPSIRTQSVKTQAMIEDGGTLVVGGVYQEVI 649 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 Q + +P+L +P+LG LF+ N E+ TP ++ Sbjct: 650 QNNVKKVPMLGDLPVLGNLFKTRSRNNSRNELLFFITPRIM 690 >gi|71276554|ref|ZP_00652828.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Dixon] gi|71901093|ref|ZP_00683201.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] gi|170730937|ref|YP_001776370.1| fimbrial assembly protein [Xylella fastidiosa M12] gi|71162625|gb|EAO12353.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Dixon] gi|71729136|gb|EAO31259.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] gi|167965730|gb|ACA12740.1| fimbrial assembly protein [Xylella fastidiosa M12] Length = 630 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/220 (20%), Positives = 99/220 (45%), Gaps = 14/220 (6%) Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERAT 267 IG + SS+ ++ D GG + +++ G +F+ + L AL++ + Sbjct: 404 IGSNVTTADSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLG--PKFNLDLELSALQQES 461 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVL 323 ++ P + + + G + Y T++ T + + + L TPT+ Sbjct: 462 RGEVISNPRIVTANQREGYIKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTIT 521 Query: 324 SPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + R+ L + + E+ + + N G +P+ R+ +T V + G T+V+ G+ + + Sbjct: 522 NDNRVFLNMTVKKDEIDQMITIANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRN 581 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P L +P LG LF+ ++++ E+ I TP +++ Sbjct: 582 SVSKVPFLGDVPFLGNLFKKRGKDKQKAELLIFVTPKVLR 621 >gi|255311500|ref|ZP_05354070.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis 6276] gi|255317802|ref|ZP_05359048.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis 6276s] Length = 921 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313 +L AL++ + P + A Q ASF G ++T S+ TG+ + + D G Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 >gi|222100424|ref|YP_002534992.1| General secretion pathway protein D [Thermotoga neapolitana DSM 4359] gi|221572814|gb|ACM23626.1| General secretion pathway protein D [Thermotoga neapolitana DSM 4359] Length = 387 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 18/227 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV + V + EV +D ++G S G + F ++ G +V+ D F Sbjct: 166 QVKISVIVTEVSKDYSNELGLNS--LDYSFGSGQEFNENWSATLGLVTGLINVQT--DVF 221 Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-VTTHDY 312 L LE + A+P + SG+ AS G + + + + GA S + + D Sbjct: 222 GQILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQV--VLLQAEGAVSRIESIDV 279 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKAD--TTVELPSGGTIV 369 GV + P V+ + L + +VS AG+ + ++ V++ + TT+ L +G T+V Sbjct: 280 GVSIDIQPRVMDKEELELTLSPKVSH-----FAGEKLGTFAVKQNELSTTLFLKNGQTVV 334 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAA 414 ++G +D Q G+P+L+KIP++ LF + + +++E IFI A Sbjct: 335 ISGATIEDNAQTSSGVPILNKIPLIRYLFGGTMKKDSQKELYIFIKA 381 >gi|167838164|ref|ZP_02465023.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 572 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + ++++ +G P+ Sbjct: 443 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DIAKDSVGEETASGPA 500 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ Sbjct: 501 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 560 Query: 411 FIAATPFLV 419 + TP +V Sbjct: 561 VVYITPTVV 569 >gi|296436215|gb|ADH18389.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis G/9768] gi|296438075|gb|ADH20236.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis G/11074] gi|297140576|gb|ADH97334.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis G/9301] Length = 921 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313 +L AL++ + P + A Q ASF G ++T S+ TG+ + + D G Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 >gi|217969269|ref|YP_002354503.1| type IV pilus secretin PilQ [Thauera sp. MZ1T] gi|217506596|gb|ACK53607.1| type IV pilus secretin PilQ [Thauera sp. MZ1T] Length = 711 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 1/161 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHF 318 L ALE R ++ P + + A G Q S+ G +V D + L Sbjct: 544 LQALESDGRGRVVSSPRVLTANQVEALIKQGTQIPIPIPSTQVGGEPTVEYKDAVLSLKV 603 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P++ GRI L + P PS + T V + +GGT+V+ G+ ++ Sbjct: 604 RPSITPDGRIQLSVLVNKDRPDFTNVVLGRPSIDTKSVQTEVTVENGGTLVIGGVYEEQE 663 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++ +P+L ++P+LG LFR E+ E+ + TP LV Sbjct: 664 LNGEDRVPVLGELPVLGGLFRTRSTIAEKKELLVFITPRLV 704 >gi|71900198|ref|ZP_00682337.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] gi|71730031|gb|EAO32123.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] Length = 603 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/220 (20%), Positives = 99/220 (45%), Gaps = 14/220 (6%) Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERAT 267 IG + SS+ ++ D GG + +++ G +F+ + L AL++ + Sbjct: 377 IGSHVTTADSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLG--PKFNLDLELSALQQES 434 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----DYGVVLHFTPTVL 323 ++ P + + + G + Y T++ T + + + L TPT+ Sbjct: 435 RGEVISNPRIVTANQREGYIKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTIT 494 Query: 324 SPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + R+ L + + E+ + + N G +P+ R+ +T V + G T+V+ G+ + + Sbjct: 495 NDNRVFLNMTVKKDEIDQMITIANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRN 554 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P L +P LG LF+ ++++ E+ I TP +++ Sbjct: 555 SVSKVPFLGDVPFLGNLFKKRGKDKQKAELLIFVTPKVLR 594 >gi|77919277|ref|YP_357092.1| type II secretory pathway, component HofQ [Pelobacter carbinolicus DSM 2380] gi|77545360|gb|ABA88922.1| type II secretory pathway, component HofQ [Pelobacter carbinolicus DSM 2380] Length = 767 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 13/142 (9%) Query: 298 VSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMP 349 +S++TG +T+V D GV L P + I ++ EVS E + G G Sbjct: 451 ISTTTGDVTSTNVQYIDVGVKLDVEPNIQLDDTIVTKLTLEVSSILEKEEIAG--GGSAL 508 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 A +++ L G ++ GL+++D+ ++ +P + IPI+G LF + ++E Sbjct: 509 RISTTNAGSSLILKDGERTIIGGLIRNDLSDTRDTLPFIGSIPIIGHLFTGRSKEKNKSE 568 Query: 410 IFIAATPFLVKPVAMRDLSRPD 431 I ++ TP +V+ V D+ RPD Sbjct: 569 ILLSITPHIVRSV---DMPRPD 587 >gi|182414666|ref|YP_001819732.1| type II and III secretion system protein [Opitutus terrae PB90-1] gi|177841880|gb|ACB76132.1| type II and III secretion system protein [Opitutus terrae PB90-1] Length = 895 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 41/217 (18%) Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--------- 296 ++ GV+ F V+ AL + L+ P +T +SG A+ T + Y Sbjct: 660 TISGVIGEFDVNAVVRALSQQQGTDLLSAPKVTVLSGNPATITVAQEMRYPQSFGQTQSQ 719 Query: 297 ------------TVSSSTGAT-SVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSE---- 338 V+ + G T + GV L TPTV I L + +V+E Sbjct: 720 VGTGNASGGGSAGVAITAGTPQEFTKRNIGVELRVTPTVEEDDYSISLDLNPKVTEFDGF 779 Query: 339 -----PVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 P I ++ P + VR T V + G T+V+ GL +++++++ + Sbjct: 780 VEYGGPSIAISGSTTVTVPSGFYQPIFSVRDIATKVTIWDGATLVMGGLTREEVKKVNDK 839 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P+L +P++G FR+ + ++ + I T LV P Sbjct: 840 VPILGDLPLIGRAFRSKGESAQKRNLLIFVTANLVNP 876 >gi|15605407|ref|NP_220193.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis D/UW-3/CX] gi|3329125|gb|AAC68269.1| probable Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis D/UW-3/CX] gi|297748805|gb|ADI51351.1| General secretion pathway protein D [Chlamydia trachomatis D-EC] gi|297749685|gb|ADI52363.1| General secretion pathway protein D [Chlamydia trachomatis D-LC] Length = 921 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313 +L AL++ + P + A Q ASF G ++T S+ TG+ + + D G Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 >gi|237805025|ref|YP_002889179.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis B/TZ1A828/OT] gi|231273325|emb|CAX10240.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis B/TZ1A828/OT] Length = 921 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313 +L AL++ + P + A Q ASF G ++T S+ TG+ + + D G Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 >gi|254357308|ref|ZP_04973582.1| type IV pilus secretin PilQ [Burkholderia mallei 2002721280] gi|148026372|gb|EDK84457.1| type IV pilus secretin PilQ [Burkholderia mallei 2002721280] Length = 552 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 423 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 480 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ Sbjct: 481 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 540 Query: 411 FIAATPFLV 419 + TP +V Sbjct: 541 VVYITPTVV 549 >gi|76789414|ref|YP_328500.1| general secretion pathway protein D [Chlamydia trachomatis A/HAR-13] gi|237803104|ref|YP_002888298.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis B/Jali20/OT] gi|76167944|gb|AAX50952.1| general secretion pathway protein D [Chlamydia trachomatis A/HAR-13] gi|231274338|emb|CAX11133.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis B/Jali20/OT] Length = 921 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313 +L AL++ + P + A Q ASF G ++T S+ TG+ + + D G Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 >gi|325521797|gb|EGD00533.1| putative type IV pilus secretin [Burkholderia sp. TJI49] Length = 215 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 11/165 (6%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ G + V + L Sbjct: 26 LSALEAQGRGQIVSRPRVVTADRAKAIVEQGAELPYQ-AKVGNGVSGVQFRRATLKLEVE 84 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG----LLK 375 P + GR+ L + +V++ +G P+ + T VE+ GGT+ + G L + Sbjct: 85 PQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVEDGGTVAIGGIYERLRR 142 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 DD+ + +PLL KIP+LGALFR+ + +E+ + TP +V+ Sbjct: 143 DDVTR----VPLLGKIPVLGALFRHRAQREQRSELVVFITPTVVR 183 >gi|163802893|ref|ZP_02196781.1| MSHA biogenesis protein MshL [Vibrio sp. AND4] gi|159173300|gb|EDP58126.1| MSHA biogenesis protein MshL [Vibrio sp. AND4] Length = 531 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 105/255 (41%), Gaps = 34/255 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------GKFVSEGGDF 245 QV L+ I EV Q G S +S G S S D G + GG Sbjct: 257 QVILEAKILEVTLSDGYQQGIDWSNMSASIGNSGSIVVDRSPLSLPLDAIGTLL--GGQT 314 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG- 303 +V +F+ V++ + + L+ P +TA + Q + G + T +SS+ G Sbjct: 315 NV--TFSDGNFKAVMNFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGN 372 Query: 304 --------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAG------ 346 +T G+ L TP + G + L + EV E + +N G Sbjct: 373 GENSNAVPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEIKKLNLGGEFNNV 432 Query: 347 DMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P + +R++D+ + G +V+ GL+K + +P L +P LG LFRN Sbjct: 433 QLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNV 492 Query: 405 REETEIFIAATPFLV 419 ++TE+ I P +V Sbjct: 493 TQKTELVILLKPTVV 507 >gi|229530247|ref|ZP_04419635.1| MSHA biogenesis protein MshL [Vibrio cholerae 12129(1)] gi|229332020|gb|EEN97508.1| MSHA biogenesis protein MshL [Vibrio cholerae 12129(1)] Length = 559 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 106/261 (40%), Gaps = 38/261 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSE-------- 241 QV L+ I EV Q G S SS+G S + D G ++ Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPGLDAI 336 Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 GG +V V+ SF+ V+ + + L+ P +TA + Q A G Y T Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394 Query: 298 VSSS---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340 SS TG + + D G+ L TP + G + L + V E + Sbjct: 395 DLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454 Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 ++P R +R++D+ + G +V+ GL+K + +P L +P LG LF Sbjct: 455 YRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514 Query: 399 RNSRFNREETEIFIAATPFLV 419 RN+ ++TE+ I P +V Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535 >gi|166154016|ref|YP_001654134.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis 434/Bu] gi|301335216|ref|ZP_07223460.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis L2tet1] gi|165930004|emb|CAP03487.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis 434/Bu] Length = 921 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313 +L AL++ + P + A Q ASF G ++T S+ TG+ + + D G Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 >gi|296437143|gb|ADH19313.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis G/11222] Length = 921 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313 +L AL++ + P + A Q ASF G ++T S+ TG+ + + D G Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 >gi|188990354|ref|YP_001902364.1| Fimbrial assembly protein pilQ precursor [Xanthomonas campestris pv. campestris str. B100] gi|167732114|emb|CAP50306.1| Fimbrial assembly protein pilQ precursor [Xanthomonas campestris pv. campestris] Length = 626 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 84/174 (48%), Gaps = 7/174 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--- 310 F+ + L AL++ ++ P + + + G + Y T++ T + T + Sbjct: 447 FNLDLELSALQQEGRGEVISNPRIVTSNQREGVIKQGREIGYVTITGGTAGQAATPNVQF 506 Query: 311 -DYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + + L TPT+ + R+ L + + EV E + N G +PS R+ +T V + G Sbjct: 507 KEVLLELKVTPTITNDNRVFLNMNVKKDEVDELIELPNYGTVPSINRREINTAVLVDDGQ 566 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ G+ + + +P L +P LG LF++ ++++ E+ I TP +++ Sbjct: 567 TVVIGGVYEFSDRSSVNKVPFLGDVPFLGNLFKSRGRSKDKAELLIFITPKVLR 620 >gi|255349063|ref|ZP_05381070.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis 70] gi|255503601|ref|ZP_05381991.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis 70s] gi|255507281|ref|ZP_05382920.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis D(s)2923] gi|296439006|gb|ADH21159.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis E/11023] Length = 921 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313 +L AL++ + P + A Q ASF G ++T S+ TG+ + + D G Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 >gi|166154891|ref|YP_001653146.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|165930879|emb|CAP06441.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 921 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313 +L AL++ + P + A Q ASF G ++T S+ TG+ + + D G Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 >gi|289525718|emb|CBJ15199.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis Sweden2] gi|296435288|gb|ADH17466.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis E/150] Length = 921 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313 +L AL++ + P + A Q ASF G ++T S+ TG+ + + D G Sbjct: 701 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 760 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 761 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 819 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 820 IRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865 >gi|255320222|ref|ZP_05361407.1| fimbrial assembly protein PilQ [Acinetobacter radioresistens SK82] gi|255302661|gb|EET81893.1| fimbrial assembly protein PilQ [Acinetobacter radioresistens SK82] Length = 726 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 5/176 (2%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L F + L AL+ ++ P + Q A SG Q Y++ S GA +V+T Sbjct: 549 LSDFMLDLELSALQADGYGEVISTPKVLTADKQQARVASGTQIPYQS-SEGGGANAVSTT 607 Query: 311 DY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 ++ + L+ TP++ G+I + + P G + + + +T V + +G T Sbjct: 608 EFVDATLSLNVTPSITPDGKIQMLLNITSDTPGNPTPTGQI-AINKNEINTNVLVNNGET 666 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +VL G+ + + + + +P+L +P +G LFR + + E+ I TP +V A Sbjct: 667 VVLGGIFEQETRNTQTKVPVLGDLPGVGRLFRRDAKSNNKRELLIFVTPRIVNDSA 722 >gi|237814100|ref|YP_002898551.1| type IV pilus secretin PilQ [Burkholderia pseudomallei MSHR346] gi|237503013|gb|ACQ95331.1| type IV pilus secretin PilQ [Burkholderia pseudomallei MSHR346] Length = 552 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 423 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 480 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ Sbjct: 481 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 540 Query: 411 FIAATPFLV 419 + TP +V Sbjct: 541 VVYITPTVV 549 >gi|42522439|ref|NP_967819.1| fimbrial assembly protein [Bdellovibrio bacteriovorus HD100] gi|39574971|emb|CAE78812.1| fimbrial assembly protein [Bdellovibrio bacteriovorus HD100] Length = 726 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/241 (22%), Positives = 109/241 (45%), Gaps = 16/241 (6%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGP---SKSFAADFGGKFVSEGGD 244 QV+++ I E + + IG S TG ++ GP + SF + S + Sbjct: 471 QVSIEGKIVEAKESFTRNIGVNWSATGAPIKLGSTARGPVNMNPSFNVNQSAAGSSGALN 530 Query: 245 FSVK-GVLDRFSFETVLHAL-ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F++ G LD F + AL E ++ ++ P + +S + A + + V+ + Sbjct: 531 FNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQTTEVPVRQVTQNG 590 Query: 303 GATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADT 358 AT T + L TP V + G + +++ V++ ++ V R+A+T Sbjct: 591 TATQETFQFKPLTLKLEVTPQVTADGSVIMKVLVNRQFRGADVSSAGQGAFAVNSREANT 650 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + +G T V+ G+ + D + G+P ++P + LF+ ++E++E+ I TP + Sbjct: 651 RVLVKNGQTAVIGGIYQSDATDGEVGVPWFRELPFVSYLFKTKNISKEKSELLIFLTPRI 710 Query: 419 V 419 + Sbjct: 711 M 711 >gi|33599773|ref|NP_887333.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] gi|33567370|emb|CAE31283.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] Length = 545 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 21/179 (11%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GA 304 SF L+AL +++ L+ PT+ +G A + G Y T S+T + Sbjct: 360 SFSVALNALRSFGSVKVLSNPTVRVRNGVPAYLSVGANVRYVTEISTTFNNIGGGSSNSS 419 Query: 305 TSVTTHDY--GVVLHFTPTVLSPGRIGLRI---QTEV---SEPVIGVNAGD---MPSYRV 353 + V T GVV+ P + GR+ L + QT+V S ++ V G+ +P Sbjct: 420 SDVQTDSLFSGVVVGVAPFIHEDGRVELFVHPMQTQVQPQSLALVDVGNGNSVTLPIINT 479 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + TT+ L +G T+VL GL+ +G+P LS IP G LF N + + E+ I Sbjct: 480 KSITTTLNLNNGDTVVLGGLIDQQFTNANKGLPGLSDIPGAGVLFDNRSDSHKSRELVI 538 >gi|134283134|ref|ZP_01769835.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 305] gi|134245329|gb|EBA45422.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 305] Length = 575 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 446 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 503 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ Sbjct: 504 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 563 Query: 411 FIAATPFLV 419 + TP +V Sbjct: 564 VVYITPTVV 572 >gi|124268320|ref|YP_001022324.1| general secretion pathway protein D [Methylibium petroleiphilum PM1] gi|124261095|gb|ABM96089.1| general secretion pathway protein D [Methylibium petroleiphilum PM1] Length = 736 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/277 (24%), Positives = 116/277 (41%), Gaps = 50/277 (18%) Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG----VLDRFSFETVLHALERATA 268 IG + TG + + S AA GG VS G+ G V+ RF+ L AL R Sbjct: 444 IGGTNFGTGGDNIINLSIAAAQGGTAVS--GNLPSAGLNLGVIRRFAGVYTLGALARFLE 501 Query: 269 IRT----LAEPTLTAIS--------GQSASFTSGGQHLYKTVSSSTGAT----SVTTHDY 312 L+ P L + GQ+ F +G + + + +GAT ++ D Sbjct: 502 TNADGNILSTPNLVTLDNEEAKIVVGQNVPFVTGS---FTSTGTGSGATNPFQTIERRDV 558 Query: 313 GVVLHFTPTVLSPGRIGLRIQTE--------VSEPVIGVNAGDMPSYRVRKADTTVELPS 364 G+ L P + G + + I E VS+ V AG + + R ++TV + Sbjct: 559 GITLRVKPQIGENGTVRMTIYQEASSVVNQNVSQGVADATAGLVTNKR--SIESTVVVND 616 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G +V+ GL++D Q +P L ++P +GALFR+ R ++ + + ++P M Sbjct: 617 GDILVMGGLMQDQFQDNSSRVPGLGRLPGIGALFRSDNRTRTKSNLMV-----FLRPQVM 671 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 R + + A +R + I ++ S+ E Sbjct: 672 RS----------AESSNALSLDRYDLIRAQQQNSQPE 698 >gi|261414659|ref|YP_003248342.1| type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371115|gb|ACX73860.1| type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326330|gb|ADL25531.1| bacterial type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 487 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 3/149 (2%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA P ++ + A G + + + S G +S + G+ L TP V RI L Sbjct: 288 LASPQVSTLDNTEAQVFMGDKVSIRVIDDS-GESSTKMVETGIKLTVTPHVSGDNRILLD 346 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + E + G + ++A T V + G T+V+ GL +++ + + GIP L I Sbjct: 347 LHPENNS--YGYDEKGEVVISTQEAKTKVVVADGETVVIGGLTRNENTESESGIPFLKDI 404 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P+LG LF+ SR + + ++ I TP +++ Sbjct: 405 PLLGNLFKYSRKSITKKDLVIFVTPRIIR 433 >gi|194367008|ref|YP_002029618.1| type IV pilus secretin PilQ [Stenotrophomonas maltophilia R551-3] gi|194349812|gb|ACF52935.1| type IV pilus secretin PilQ [Stenotrophomonas maltophilia R551-3] Length = 657 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 82/174 (47%), Gaps = 7/174 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-TGATSVTTHDY 312 + + L A++ + ++ P + + + A+ G + Y T+S TG + + Sbjct: 479 YLLDVELSAMQEESRGEVISNPRVVTTNQREATIKQGKEIGYVTISGGGTGGVATPNVQF 538 Query: 313 GVV---LHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V L TPT+ + R+ L +Q EV + + G +PS R+ +T V + G Sbjct: 539 KEVVLELKVTPTITNDNRVFLNMQVKKDEVDQLIQLDGYGTVPSINRREVNTAVLVEDGQ 598 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ G+ + + +P L +P LG LF+ N+++ E+ + TP +++ Sbjct: 599 TVVIGGVYEFTDRSSISKVPFLGDVPFLGNLFKKRGRNKDKAELLVFVTPKVLR 652 >gi|124385937|ref|YP_001027735.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] gi|124293957|gb|ABN03226.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] Length = 616 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 487 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 544 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ Sbjct: 545 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 604 Query: 411 FIAATPFLV 419 + TP +V Sbjct: 605 VVYITPTVV 613 >gi|312881261|ref|ZP_07741059.1| YscC/HrcC family type III secretion outer membrane protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309371153|gb|EFP98607.1| YscC/HrcC family type III secretion outer membrane protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 489 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 32/224 (14%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----AADFGGKFVSEGGDFSVK 248 + + + VTI +V Q+G S G S SF ++D + G+F V+ Sbjct: 262 EMIEVSVTIIDVDTSDFNQLGIDWSAAAKIGGGSISFNQGSMSSDNFSTVIGNTGNFMVR 321 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--S 306 L+ALE+ + + L+ P++ ++ A Y V A S Sbjct: 322 -----------LNALEQNSKAKVLSRPSVVTLNNVQAVLDKN-VTFYTKVEGEKVAKLES 369 Query: 307 VTTHDYGVVLHFTPTVLSPG---RIGLRI------QTEVSEPVIGVNAGDMPSYRVRKAD 357 VTT G +L TP +++ R+ L + QT + IG N +P + Sbjct: 370 VTT---GSLLRVTPRIVNEKHHQRVMLSLNIQDGQQTGQQKKAIGTNDA-LPQVENSEIA 425 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 T L +G +++L G ++D + ++ IPLL IP+LG LFR++ Sbjct: 426 TQATLKTGESLLLGGFVQDKNKTVENKIPLLGDIPLLGGLFRST 469 >gi|310779606|ref|YP_003967939.1| type II and III secretion system protein [Ilyobacter polytropus DSM 2926] gi|309748929|gb|ADO83591.1| type II and III secretion system protein [Ilyobacter polytropus DSM 2926] Length = 594 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/269 (24%), Positives = 122/269 (45%), Gaps = 49/269 (18%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSS---GPSKSF----- 230 +KK++ L++ + QV + + +V+ ++ + +GF + G+S+ G S +F Sbjct: 280 AKKLIEDLDLP-QKQVRITAQVLDVKDNLFETLGFDWAYDSNGTSTYTDGTSGTFLGTST 338 Query: 231 ----------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 A +F F GGD V GV ++ L+ + A P++ + Sbjct: 339 DVGIGTGYSSAIEFAQSF--NGGD-DVLGV--------SINMLQSDQDMIISAVPSVVVL 387 Query: 281 SGQSASFTSGGQHL--YKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIG----LRI 332 +G+ A F++ + + Y+ G T+ T + G+V + P + + G L + Sbjct: 388 NGEEAEFSTTEEVIVGYEEEEDDDGNTTTTPMFEEAGLVFNVKPIIRTGADGGDTILLTL 447 Query: 333 QTEVSE-PVIGVNA-GDMPSYR-------VRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 TEVS ++ +A D +Y R DTTV + SG ++ + G+ + D+ + Sbjct: 448 STEVSNFNLVSTSADSDATTYNEDGGSKASRNIDTTVSVKSGESLFIGGMKRADVSNVTS 507 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFI 412 IPLL +P +G LFRN E +I+I Sbjct: 508 KIPLLGDLPFVGFLFRNEAVESELRDIYI 536 >gi|323491669|ref|ZP_08096847.1| MSHA biogenesis protein MshL [Vibrio brasiliensis LMG 20546] gi|323314031|gb|EGA67117.1| MSHA biogenesis protein MshL [Vibrio brasiliensis LMG 20546] Length = 551 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 20/190 (10%) Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---- 305 V+ SFE VL + + L+ P +TA + Q A G + T S+ + Sbjct: 337 VISSGSFEAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDSYFVTDFSANTDSSSST 396 Query: 306 -------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ-------TEVSEPVIGVNAGDMP-- 349 +T G+ L TP + G + L + E E G N+ +P Sbjct: 397 TNTTTDIELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVTQEQKEINYGSNSLTLPLA 456 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + +R++D+ + G +V+ GL+K + + +P L +P LG LFRN+ ++TE Sbjct: 457 TSSIRESDSVIRAQDGDVVVIGGLMKSNTVEQVSKVPFLGDVPALGHLFRNTSQLTQKTE 516 Query: 410 IFIAATPFLV 419 + I P +V Sbjct: 517 LVILLKPSVV 526 >gi|76809042|ref|YP_335094.1| type II/III secretion system protein [Burkholderia pseudomallei 1710b] gi|76578495|gb|ABA47970.1| type II/III secretion system protein [Burkholderia pseudomallei 1710b] Length = 575 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 446 GAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPA 503 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ Sbjct: 504 IHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSEL 563 Query: 411 FIAATPFLV 419 + TP +V Sbjct: 564 VVYITPTVV 572 >gi|94313628|ref|YP_586837.1| putative secretion type II protein [Cupriavidus metallidurans CH34] gi|93357480|gb|ABF11568.1| Putative secretion type II protein; gspD(secretin)-like protein [Cupriavidus metallidurans CH34] Length = 734 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 8/119 (6%) Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------YRV--RKADTTVEL 362 D G+ L P V +G+++ EVS + +G+ + Y++ R A T++ L Sbjct: 439 DVGIKLEVEPQVYRDNDVGIKLALEVSNITKTIQSGNAQTGLSSLAYQIGTRSASTSLRL 498 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G T +L GL+ D + + +P L ++P++G LF + + +TEI + TP +V+P Sbjct: 499 RDGETQILGGLISDQDRTSADKVPGLGQLPVVGRLFSDHNGDHVKTEIVLQITPHIVRP 557 >gi|116074048|ref|ZP_01471310.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. RS9916] gi|116069353|gb|EAU75105.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. RS9916] Length = 670 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 30/184 (16%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YKTVSSSTGATSV--TTH 310 SF L A ++T+ +TLA PTL G+SA +G + K ++ G+T T Sbjct: 472 SFYGYLEAAIQSTSAKTLASPTLLVQEGESAKVETGTSVITGVKATETANGSTQFENTRE 531 Query: 311 DYG---------------VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + G V L P+V P G + P+ + + S RVR Sbjct: 532 NAGLTLGVDIEKIDDNGFVTLKVFPSVSIPQEAGF----QEGVPIYNITGRSLSSGRVRL 587 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 D T+VL G++++ ++ P+L +P+LG +FR + RE+ E+ I T Sbjct: 588 RDRQ-------TLVLTGVIRESDIEVVRKWPILGDLPVLGQMFRKTESEREKQELVILVT 640 Query: 416 PFLV 419 P +V Sbjct: 641 PSIV 644 >gi|257459465|ref|ZP_05624574.1| type II and III secretion system protein [Campylobacter gracilis RM3268] gi|257442890|gb|EEV18024.1| type II and III secretion system protein [Campylobacter gracilis RM3268] Length = 502 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 104/228 (45%), Gaps = 24/228 (10%) Query: 212 QIGFQHSITGSSSGPSK--SFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 Q+GF + G P+K + D G GK G +++ L+ F+ + +++ LE Sbjct: 255 QLGFNTYVGGD---PTKLSGYHIDNGNRGKASDTHGTWTIGANLN-FNIDGLINFLETKG 310 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDY----GVVLHFT 319 + ++ P +T ++ Q A + G Y S++TG + + Y G++L+ Sbjct: 311 KTKIISSPKVTTMNNQPAIISVGDTINYVLKSTTTGDYQGGDTQSDDQYSIFVGILLNIL 370 Query: 320 PTVLSPGRIGLRIQTEVS-----EPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLA 371 P + RI LRI +S E + G P +K + V + G T++L Sbjct: 371 PEISDDNRIMLRINPSLSSLKYAEDNVRKENGRRDIAPDTLQKKLSSVVWVDDGDTVILG 430 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GL+ + +P+L++IP++G LF+++ +E+ TP ++ Sbjct: 431 GLIGATKSKNNTRVPVLAEIPLIGNLFKSTADILSTSELIFVVTPHII 478 >gi|284007632|emb|CBA73278.1| type III secretion outer membrane protein YscC,HrcC,mxiD,InvG,SsaC [Arsenophonus nasoniae] Length = 488 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/270 (23%), Positives = 115/270 (42%), Gaps = 30/270 (11%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL-------LNIAGEDQVTL 198 VL M +T + A + + +F + +N SS+K M L L+IA + + Sbjct: 209 VLKQMNQTNANGVNAQQDTTSFAADPRQNAVVVSSNKHDMGLYSTLIKQLDIA-PTMIEV 267 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----AADFGGKFVSEGGDFSVKGVLDR 253 V+I +V Q+G S + G + SF +D + G+F V+ Sbjct: 268 SVSIIDVDASDFNQLGIDWSASAKIGGGTISFNQGTSGSDNFSTVIGNTGNFMVR----- 322 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 L+ALE+ + + L+ P++ ++ A K T G Sbjct: 323 ------LNALEKVSKAKILSRPSVVTLNNVQAVLDKNITFYTKLQGDKVAKLESVTA--G 374 Query: 314 VVLHFTPTVL-SPGR--IGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIV 369 +L TP ++ S GR + L + E + +N + +P + + T L +G +++ Sbjct: 375 SLLRVTPRLIDSNGRKKVMLSLNIEDGQQTKAINDSEPLPQVQNSEIATQATLNTGESLL 434 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 L G ++D Q ++ IPLL +P++G LFR Sbjct: 435 LGGFVQDKDQTVQNKIPLLGDLPLIGGLFR 464 >gi|262064162|gb|ACY07145.1| IV [Enterobacteria phage f1] Length = 426 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 18/196 (9%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S GG F G+ + + AL+ + + L+ P + +SGQ S S GQ++ Sbjct: 241 SAGGSF---GIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSI-SVGQNVPFITG 296 Query: 300 SSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 TG + ++ + G+ + P ++ G I L I ++ A D+ + Sbjct: 297 RVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITN 356 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R TTV L G T++L GL +P LSKIP++G LF + + EE+ ++ Sbjct: 357 Q-RSIATTVNLRDGQTLLLGGLTDYKNTSQDSDVPFLSKIPLIGLLFSSRSDSNEESTLY 415 Query: 412 IAATPFLVKPVAMRDL 427 + LVK +R L Sbjct: 416 V-----LVKATIVRAL 426 >gi|152978367|ref|YP_001343996.1| type IV pilus secretin PilQ [Actinobacillus succinogenes 130Z] gi|150840090|gb|ABR74061.1| type IV pilus secretin PilQ [Actinobacillus succinogenes 130Z] Length = 482 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 20/246 (8%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQ----------HSITGSSSGP-----SKSFAADFGGKF 238 +Q+ ++ I + + LK++G + H ++GS + S + +F Sbjct: 195 EQIAIEARIVTMNDESLKELGVRWGMFEPTAGAHKVSGSLAANGFTDISNNLNVNFATAT 254 Query: 239 VSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + G V + R + L ALE+ + +A P L + ++AS G + Y Sbjct: 255 MPAGSVALQVAKINGRL-LDLELTALEQEKNVEIIASPRLLTTNKKAASIKQGTEIPYVV 313 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354 + SV + + L TP + I + + + P V+ G+ + S + Sbjct: 314 TNGKNDTQSVEFREAVLGLEVTPHISQNNAILMDLTVSQNSPGNRVSYGENSEVVSIDKQ 373 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + T V G TIVL G+ D + + +P+L IP++ LF N R++ E+ I Sbjct: 374 EIKTQVFAKDGETIVLGGVFHDTVTKGSNKVPVLGDIPVIKHLFGNHSERRQKRELVIFV 433 Query: 415 TPFLVK 420 TP ++K Sbjct: 434 TPRILK 439 >gi|71908829|ref|YP_286416.1| type II and III secretion system secretin [Dechloromonas aromatica RCB] gi|71848450|gb|AAZ47946.1| type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal [Dechloromonas aromatica RCB] Length = 667 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 9/139 (6%) Query: 297 TVSSSTG-ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRV- 353 T +++ G + SV D G+ L P V + +++ EVS V + + +Y++ Sbjct: 450 TATANVGVSASVNYLDVGLKLDVEPNVTLDDEVSIKVGLEVSSIVKEITGPSNSLAYQIG 509 Query: 354 -RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A TT+ L G T VLAGL+ D+ ++ IP L +IP++G F + + +TEI + Sbjct: 510 TRSASTTLRLKDGETQVLAGLISDEERKTTSHIPGLGEIPVVGRAFGSHKDTSTKTEIIL 569 Query: 413 AATPFLVKPVAMRDLSRPD 431 TP +V R++ RP+ Sbjct: 570 LITPRIV-----RNIHRPE 583 >gi|171911307|ref|ZP_02926777.1| putative general secretion pathway protein [Verrucomicrobium spinosum DSM 4136] Length = 821 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/266 (22%), Positives = 105/266 (39%), Gaps = 61/266 (22%) Query: 217 HSITGSSSGPSKSFAADFGGKFVS--------EGGDFSVKGVLDRFSFETVLHALERATA 268 +S+T + S + AAD +S G F++ GV F+ + AL + Sbjct: 519 YSVTSGNRSGSSAIAADSIDGLISGQSQASSVAPGVFTLAGVFTDPQFQVTIRALSQKKG 578 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKT------VSSSTGA------------------ 304 + ++ P++T SGQ A+ + +Y T + + GA Sbjct: 579 VDLMSAPSVTTRSGQRATVEVIREFIYPTEFDPPQIPQNFGATSSTSTTGTSSTSSFPVT 638 Query: 305 ----TSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAG------------- 346 T+ GV L P + G I L + EV+E +N G Sbjct: 639 PTTPTAFEMRPVGVRLEVDPVIGPDGYTIDLNLAPEVTEFEGFINYGSPINTASTDALGN 698 Query: 347 -----------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + P + RK T V + G T+ + GL+++D+Q +++ +P+L +P LG Sbjct: 699 PTTVTLTENKIEQPVFSTRKVTTAVTVWDGQTVAMGGLIREDVQDVEDKVPILGDLPFLG 758 Query: 396 ALFRNSRFNREETEIFIAATPFLVKP 421 LF++ + + + I T L+ P Sbjct: 759 RLFQSKAEDHFKRNLMIFVTAKLIDP 784 >gi|32471490|ref|NP_864483.1| general secretory pathway protein D [Rhodopirellula baltica SH 1] gi|32443331|emb|CAD72164.1| similar to general secretory pathway protein D [Rhodopirellula baltica SH 1] Length = 1161 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 40/68 (58%) Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P++ +TTV +P GGTI+L G+ + + + G+P LSKIP + LFRN+ RE Sbjct: 1075 PTFAFTTVNTTVSVPDGGTILLGGIKRMSEGRNERGVPFLSKIPYVSRLFRNTAVGRESR 1134 Query: 409 EIFIAATP 416 + + TP Sbjct: 1135 SLMMMVTP 1142 >gi|313681848|ref|YP_004059586.1| pilus (msha type) biogenesis protein mshl [Sulfuricurvum kujiense DSM 16994] gi|313154708|gb|ADR33386.1| pilus (MSHA type) biogenesis protein MshL [Sulfuricurvum kujiense DSM 16994] Length = 533 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 14/166 (8%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------- 306 S V+ L+ + +++ P + ++ Q A T+G + YKT SS++ + Sbjct: 325 SLNEVIKFLKTQGDVYSISNPKILTLNNQPALITAGTELFYKTKSSTSTTAASTTTSENE 384 Query: 307 -VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTV 360 V++ GV+L TP + G I LRI +SE +N+ + P R+ + + Sbjct: 385 IVSSVFSGVLLDITPEISKDGSITLRINPSISETASVINSSNEQRSMPPDLSRRQMSSVI 444 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + G ++L GL+ +PLL IP+LG LF+ N++ Sbjct: 445 SVQDGSRVILGGLINTKNVNDTNKVPLLGDIPVLGYLFKKEGLNKK 490 >gi|240079992|ref|ZP_04724535.1| PilQ [Neisseria gonorrhoeae FA19] gi|268596134|ref|ZP_06130301.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae FA19] gi|268549922|gb|EEZ44941.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae FA19] Length = 731 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/261 (21%), Positives = 110/261 (42%), Gaps = 26/261 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K+++ L++ + QV ++ I E + +G + TG +++ A +G Sbjct: 465 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFR 523 Query: 242 GGD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 GGD S+ + + L A E + +TLA P + + + Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPV- 340 A SG + + ++S G S T VL T P + G+I + ++ P Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-- 398 + + + +T + +GGT+++ G+ +++ +PLL IP++G LF Sbjct: 644 CASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703 Query: 399 RNSRFNREETEIFIAATPFLV 419 R + +R E IFI TP ++ Sbjct: 704 RGKKTDRRELLIFI--TPRII 722 >gi|121634273|ref|YP_974518.1| pilus secretin [Neisseria meningitidis FAM18] gi|120865979|emb|CAM09716.1| pilus secretin [Neisseria meningitidis FAM18] Length = 589 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S + G +S T VL T Sbjct: 418 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 477 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 478 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 537 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 D +PLL IP++G LF R + +R E IFI Sbjct: 538 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 575 >gi|791156|gb|AAA65694.1| mannose-sensitive hemagglutinin D [Vibrio cholerae] Length = 559 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 21/197 (10%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 GG +V V+ SF+ V+ + + L+ P +TA + Q A G Y T SS Sbjct: 341 GGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSS 398 Query: 302 ---TGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVN 344 TG + + D G+ L TP + G + L + V E + Sbjct: 399 VVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSE 458 Query: 345 AGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++P R +R++D+ + G +V+ GL+K + +P L +P LG LFRN+ Sbjct: 459 EIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTT 518 Query: 403 FNREETEIFIAATPFLV 419 ++TE+ I P +V Sbjct: 519 KLTQKTELVILLKPTVV 535 >gi|332186824|ref|ZP_08388566.1| general secretion pathway protein D [Sphingomonas sp. S17] gi|332013157|gb|EGI55220.1| general secretion pathway protein D [Sphingomonas sp. S17] Length = 739 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 85/337 (25%), Positives = 144/337 (42%), Gaps = 42/337 (12%) Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--SQSGRNQYANSSSKKV 184 ++R I + ++++ + V++ +V + D Q A L FL S SG A++ Sbjct: 368 IQRQIGEVIRQLDVRREQVLIEAIVAEVSD-QTARRLGAQFLLGSLSGGAFAASTYGNTA 426 Query: 185 MNLLNIAGE----------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 N+L IAG D + + L Q Q SI G++ G Sbjct: 427 PNILQIAGAVGAQTLGGTRTIVTAPDGTRTETNVPNPAFSQLTQSAVQ-SILGTTGG--- 482 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 FA +GG+ GD +++ +T + L+ I TL ++ GQ T Sbjct: 483 -FAG-WGGQV----GDTVFGAIINAVKSDTTSNLLQ-VPHIITLDNQQAHSLVGQEIPVT 535 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 +G Q L ++ +V + G+ L P V + G + L ++ EVS V++ + Sbjct: 536 TG-QALSNNFDNAF--RTVQRQNVGIQLDVKPQVNAGGSLKLYVRLEVSSIAGPVSSNNS 592 Query: 349 PSYRVRKADTTVELPSGGTI-VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 ++A V P G I V+ GLL D+ ++ E IPLL IP LGALFR+ +R + Sbjct: 593 ELILNKRAFENVFTPDDGQITVIGGLLDDNERRTIEKIPLLGDIPGLGALFRSKARSRSK 652 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 T + + ++P +R P+D V + + Sbjct: 653 TNLMV-----FIRPTILRT---PEDSRRVTEQRYGYL 681 >gi|327538107|gb|EGF24796.1| protein containing Type II and III secretion system domain [Rhodopirellula baltica WH47] Length = 1062 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 40/68 (58%) Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P++ +TTV +P GGTI+L G+ + + + G+P LSKIP + LFRN+ RE Sbjct: 976 PTFAFTTVNTTVSVPDGGTILLGGIKRMSEGRNERGVPFLSKIPYVSRLFRNTAVGRESR 1035 Query: 409 EIFIAATP 416 + + TP Sbjct: 1036 SLMMMVTP 1043 >gi|238897391|ref|YP_002923068.1| type III outer membrane secretin precursor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465146|gb|ACQ66920.1| type III outer membrane secretin precursor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 496 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 23/215 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----AADFGGKFVSEGGDFSVKG 249 ++ + V I +V + Q+G + S G SF ++D GG G DF V+ Sbjct: 270 EIEISVAIIDVDASDINQLGINWEASASLGGGKVSFNKGFISSDDGGFSTVVGNDFMVR- 328 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 ++ALE+ + R L+ P++ ++ A + T + + Sbjct: 329 ----------INALEQHSKARVLSRPSIVTLNNIQAVLDKN--VTFYTKLQGDKVAKLDS 376 Query: 310 HDYGVVLHFTPTVLS-PGR----IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 G ++ TP ++ G+ + L IQ P I +P + T L Sbjct: 377 RTTGTLMQVTPRMIKDKGKEDVLLNLDIQDGQQRPSINNTTEILPQIDNSQITTQAVLKP 436 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 G ++L G ++D + K IPLL IP++G LFR Sbjct: 437 GQNLLLGGFIQDSQKASKHKIPLLGDIPLIGGLFR 471 >gi|166363715|ref|YP_001655988.1| type IV pilus assembly protein [Microcystis aeruginosa NIES-843] gi|166086088|dbj|BAG00796.1| type IV pilus assembly protein [Microcystis aeruginosa NIES-843] Length = 701 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 10/120 (8%) Query: 311 DYGVV-LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT--VELPSGGT 367 D G + L +PTV SPG T + G+N+G+ + +R+ T+ V L G + Sbjct: 564 DNGFISLSVSPTVASPG-------TPIEFNSGGINSGNTLTPLIRRELTSGLVRLRDGQS 616 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 ++L+G++++ Q + +P+L IPILGALFR+ +E+ I TP +++ A L Sbjct: 617 LILSGIIQETQQSSETKVPILGDIPILGALFRSRTNQNNRSEVIILLTPKIIEDTATSTL 676 >gi|71901990|ref|ZP_00684038.1| general secretory pathway protein D precursor [Xylella fastidiosa Ann-1] gi|71728245|gb|EAO30428.1| general secretory pathway protein D precursor [Xylella fastidiosa Ann-1] Length = 106 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+ T + SG TI+LAGL+ + + G+P LSK+PI+G LF N EI + Sbjct: 12 RRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRREIIVL 71 Query: 414 ATPFLVK-PVAMRDLSRPDDHYSVEDDA 440 TP +V+ P R+L+ D YS + +A Sbjct: 72 LTPEIVRNPQEARNLT---DEYSQKFNA 96 >gi|229512666|ref|ZP_04402135.1| MSHA biogenesis protein MshL [Vibrio cholerae TMA 21] gi|229350343|gb|EEO15294.1| MSHA biogenesis protein MshL [Vibrio cholerae TMA 21] Length = 559 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 106/261 (40%), Gaps = 38/261 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSE-------- 241 QV L+ I EV Q G S SS+G S + D G ++ Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPGLDAI 336 Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 GG +V V+ SF+ V+ + + L+ P +TA + Q A G Y T Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394 Query: 298 -VSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340 +SS G+ +T G+ L TP + G + L + V E + Sbjct: 395 DISSVVGSGDNAQASPSIKITPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454 Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 ++P R +R++D+ + G +V+ GL+K + +P L +P LG LF Sbjct: 455 YRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514 Query: 399 RNSRFNREETEIFIAATPFLV 419 RN+ ++TE+ I P +V Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535 >gi|297517403|ref|ZP_06935789.1| general secretory pathway component, cryptic [Escherichia coli OP50] Length = 503 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 90/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 242 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 301 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 302 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 352 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 353 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 412 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 PLL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 413 APLLGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 453 >gi|289525617|emb|CBJ15095.1| general secretion pathway protein D [Chlamydia trachomatis Sweden2] Length = 760 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%) Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +F+ +GG KG++ + F L +R A P++ ++ Q+ + + + + Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F+ Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689 Query: 414 ATP 416 TP Sbjct: 690 ITP 692 >gi|325206729|gb|ADZ02182.1| type IV pilus secretin PilQ [Neisseria meningitidis M04-240196] Length = 761 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S + G +S T VL T Sbjct: 590 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 D +PLL IP++G LF R + +R E IFI Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747 >gi|312882785|ref|ZP_07742519.1| type IV pilus assembly protein PilQ [Vibrio caribbenthicus ATCC BAA-2122] gi|309369569|gb|EFP97087.1| type IV pilus assembly protein PilQ [Vibrio caribbenthicus ATCC BAA-2122] Length = 409 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 5/160 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV-LHF 318 L AL++ + ++ P L + + A G + Y + +++ + V+ L Sbjct: 249 LSALQKESKAEVISNPKLLTTNKRPAYIEQGSEIPY--LEAASSGAASIAFKKAVLSLKV 306 Query: 319 TPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP + S + L +Q P I +G + ++ T V + G TIVL G+ + Sbjct: 307 TPKITSKNDLLLDLQVTQDRPGNPINTGSGQAVAIDTQRIGTQVLVKDGETIVLGGIFQH 366 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + + IPLL +P+LGALFR + +E+ I TP Sbjct: 367 SLSNAVDKIPLLGDVPLLGALFRRNYLQENRSELLIFVTP 406 >gi|167589893|ref|ZP_02382281.1| type II and III secretion system protein [Burkholderia ubonensis Bu] Length = 773 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 113/244 (46%), Gaps = 27/244 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + +VTL V + EV + +G Q+ P K + GG EGG ++ +L Sbjct: 317 QSEVTLDVQVLEVNMNDSLDLGVQY--------PGKVQFSALGG---VEGGALTLGDLLR 365 Query: 252 ---DRFSFET-------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 DR + + L++ +TLA P + + + A+ G + T +++ Sbjct: 366 LNRDRVGVASESGGLALAIDMLQKQGKTKTLANPKIRVRNMEKANIKIGERVPIVTTTNA 425 Query: 302 TG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRV--RKA 356 G SV+ D G++L P + + +++ EVS + + +Y + R A Sbjct: 426 NGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILSKETTKTGLVAYALGTRNA 485 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T + +G T +LAGL+K + + G+P +S +P++G LF ++ + E TEI + TP Sbjct: 486 ETLMTAKNGETQILAGLVKRNESENIAGLPGMSGLPVIGRLFGSNGRSNERTEIVLLITP 545 Query: 417 FLVK 420 + + Sbjct: 546 HIER 549 >gi|171915159|ref|ZP_02930629.1| putative outer membrane protein (ComQ) [Verrucomicrobium spinosum DSM 4136] Length = 809 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 58/233 (24%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----- 297 G F+V GV F+ VL L+++ + LA PT+ SGQ A+ T + Y T Sbjct: 566 GFFAVSGVFTDPQFQVVLRGLKQSKGVDILAAPTVITKSGQRANVTVAKEFRYPTEFDPP 625 Query: 298 ---------------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRI-------- 328 ++ ST T+ D G+ L P V S R Sbjct: 626 QIPQNLSANVNGVQYVANFAPITPST-PTAFEKRDVGITLEVEPVVGSGNRTVDLNLVPS 684 Query: 329 ----------GLRIQTEVSEPVIGVNAGDM----------PSYRVRKADTTVELPSGGTI 368 G IQ S PV G+ D+ P +R K T+V + G T+ Sbjct: 685 SVEFEGFIDYGTDIQN--SAPV-GIGGADVFFNVPNDILQPIFRTNKITTSVSVWDGNTV 741 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 VL G+ + ++ + +P++ +P++G F++ N E + T ++ P Sbjct: 742 VLGGVTFEKRHKIDDKVPVVGDLPLVGRAFQSKVSNVERKNVLFFVTVRVIDP 794 >gi|15834670|ref|NP_296429.1| type III secretion protein SctC [Chlamydia muridarum Nigg] gi|7190084|gb|AAF38934.1| type III secretion protein SctC [Chlamydia muridarum Nigg] Length = 672 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 6/163 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313 +L AL++ + P + A Q ASF G ++T S+ TG+ + + D G Sbjct: 452 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 511 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 512 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 570 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 ++D + ++ G+PLLS +P++ LF + R++ I I P Sbjct: 571 IRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKP 613 >gi|296159579|ref|ZP_06842403.1| type IV pilus secretin PilQ [Burkholderia sp. Ch1-1] gi|295890287|gb|EFG70081.1| type IV pilus secretin PilQ [Burkholderia sp. Ch1-1] Length = 585 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 14/111 (12%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL- 374 L P ++ GR+ L + +V++ +G P+ + T VE+ GGT+ + G+ Sbjct: 481 LEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRVEVEDGGTVSIGGIYA 538 Query: 375 ---KDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFLVK 420 +DD+ Q +PLL KIP+LGALFR+ R R E +FI TP +V+ Sbjct: 539 TDDRDDVTQ----VPLLGKIPVLGALFRHRAHRDRRSELAVFI--TPRVVQ 583 >gi|89899353|ref|YP_521824.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89344090|gb|ABD68293.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 702 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 11/161 (6%) Query: 282 GQSASFTSGGQHLYKTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 G++ F +G T +S T+V D G+ L P + G + + I E S Sbjct: 495 GENVPFVTGSYTSNNTSGASVNPFTTVERKDVGLTLKVKPQINEDGTVKMVIYQETSAVK 554 Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 G + P+ R ++TV + G +VL GLL+D ++ +P L +P+ G LF+ Sbjct: 555 AGTEKDANGPTTSKRTIESTVLVDDGSIVVLGGLLQDKYSGNQDKVPGLGDVPLFGNLFK 614 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPD----DHYSV 436 + R +T + + ++PV +RD D D Y + Sbjct: 615 SEARTRNKTNLMV-----FLRPVVVRDAHASDQLSMDRYDL 650 >gi|307131917|ref|YP_003883933.1| general secretion pathway protein D [Dickeya dadantii 3937] gi|399825|sp|Q01565|GSPD2_DICD3 RecName: Full=General secretion pathway protein D; AltName: Full=Pectic enzymes secretion protein outD; Flags: Precursor gi|581156|emb|CAA46370.1| outD [Erwinia chrysanthemi] gi|306529446|gb|ADM99376.1| General secretion pathway protein D [Dickeya dadantii 3937] Length = 710 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 12/181 (6%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVT 308 R ++ +L AL + LA P++ + A+F G + T S +T A +V Sbjct: 474 RGNWSMLLTALSSDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQTTSADNIFNTVE 533 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSG 365 G+ L P + + L+I+ EVS + N+ ++ R + V + +G Sbjct: 534 RKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSTNSSLGVTFNTRTVNNAVMVTNG 593 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T+V+ GLL + + +PLL IP LG+LFR+ + E+ ++P +R Sbjct: 594 ETVVVGGLLDKTSVESNDKVPLLGDIPWLGSLFRS-----KSQEVRKRNLMLFLRPTIIR 648 Query: 426 D 426 D Sbjct: 649 D 649 >gi|166154787|ref|YP_001654905.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu] gi|166155662|ref|YP_001653917.1| general secretion pathway protein D [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336062|ref|ZP_07224306.1| general secretion pathway protein D [Chlamydia trachomatis L2tet1] gi|165930775|emb|CAP04272.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu] gi|165931650|emb|CAP07226.1| general secretion pathway protein D [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 760 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%) Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +F+ +GG KG++ + F L +R A P++ ++ Q+ + + + + Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F+ Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689 Query: 414 ATP 416 TP Sbjct: 690 ITP 692 >gi|254673580|emb|CBA09077.1| fimbrial assembly protein [Neisseria meningitidis alpha275] Length = 687 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S + G +S T VL T Sbjct: 516 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 575 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 576 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 635 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 D +PLL IP++G LF R + +R E IFI Sbjct: 636 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 673 >gi|316984411|gb|EFV63384.1| type IV pilus secretin PilQ family protein [Neisseria meningitidis H44/76] gi|325200874|gb|ADY96329.1| type IV pilus secretin PilQ [Neisseria meningitidis H44/76] Length = 777 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S + G +S T VL T Sbjct: 606 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 665 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 666 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 725 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 D +PLL IP++G LF R + +R E IFI Sbjct: 726 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 763 >gi|253581772|ref|ZP_04858996.1| general secretion pathway protein D [Fusobacterium varium ATCC 27725] gi|251836121|gb|EES64658.1| general secretion pathway protein D [Fusobacterium varium ATCC 27725] Length = 563 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 18/184 (9%) Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYGVVLHFTPTVLSPGR 327 A P++ G+ F + + T TT+ + G++L P + G Sbjct: 370 AMPSILVADGEEGEFKITEEVIVGEEKKENDNTEKTTYTPLFREAGIILKVKPLIKENGT 429 Query: 328 IGLRIQTEVS---------EPVI---GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 I L++ EVS E +I G + S R +TTV++ G TI + GL + Sbjct: 430 IFLKVMIEVSNFRLKKNEKENMISEGGTYNSEGGSKIGRSIETTVKMRDGETIFIGGLKR 489 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD-LSRPDDHY 434 IQ L +P L +P++ F+N +E T+I+I + K +D + + H Sbjct: 490 AVIQNLDSQVPFLGTLPVINIFFKNQSVKKEITDIYIKLKVDIEKDTWEKDSFDKIELHQ 549 Query: 435 SVED 438 ++D Sbjct: 550 KIKD 553 >gi|171060459|ref|YP_001792808.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] gi|170777904|gb|ACB36043.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] Length = 596 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR--VRKADTTVELP 363 SV D G L P V + G + L I E+S+ ++ +Y+ VR+A T++ L Sbjct: 359 SVQYIDVGFKLEVEPQVHADGDVDLDIDIELSQITQTLDTDSGVAYQLGVRQAQTSMRLR 418 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G T L GL++ + G+P LS++P++G LF + +TE+ +A TP + +PV Sbjct: 419 DGETQWLGGLIRRQERAAMSGLPGLSQLPVIGRLFGLESQDTADTELVLAVTPRIARPV 477 >gi|15678016|ref|NP_274809.1| pilQ protein [Neisseria meningitidis MC58] gi|62287061|sp|Q70M91|PILQ_NEIMB RecName: Full=Type IV pilus biogenesis and competence protein pilQ; Flags: Precursor gi|66731938|gb|AAY52170.1| pilQ protein [Neisseria meningitidis MC58] gi|325139633|gb|EGC62172.1| type IV pilus secretin PilQ [Neisseria meningitidis CU385] Length = 769 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S + G +S T VL T Sbjct: 598 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 657 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 658 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 717 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 D +PLL IP++G LF R + +R E IFI Sbjct: 718 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 755 >gi|330444063|ref|YP_004377049.1| type III secretion protein SctC [Chlamydophila pecorum E58] gi|328807173|gb|AEB41346.1| type III secretion protein SctC [Chlamydophila pecorum E58] Length = 908 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313 +L AL++ + P + A Q ASF G Y+T S+ TG+ + + D G Sbjct: 688 LLSALDQDGDTIIVLNPRIMAQDTQQASFFVGQNIPYQTTSTIIQETGSVTQNIEYEDIG 747 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T TV + L+I+ +SE + P A T +++P G +V++G Sbjct: 748 VNLVVTSTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRMQVPDGCFLVMSGH 806 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 807 IRDKTTKIVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 852 >gi|284007407|emb|CBA72822.1| type III secretion outer membrane pore, YscC,HrcC,InvG [Arsenophonus nasoniae] Length = 539 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 30/244 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+I + + L V I ++ + L Q+G + S G+ G + + G Sbjct: 284 RKIVEQLDIT-KRHIELSVWIIDIEKKALDQLGIKWS-GGAKIGQKLGVSLNAG------ 335 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 +D SF T + AL R ++ P + A F + K + Sbjct: 336 ------TSTIDGASFMTAIFALTRNDKANIVSRPMVLTQENIPAIFDNNRTFYTKLIGER 389 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKAD 357 AT + YG + P +I + I E G AG +P Sbjct: 390 --ATDLKNVTYGTAISVLPRFTINNQIEMMITVED-----GSRAGQITDHLPEIGRTNIS 442 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T +P ++++ G +D+ + ++E IPLL IP LG+LF R+N E+ + + F Sbjct: 443 TIARVPQNKSLLIGGYTRDEHRNIEEKIPLLGDIPYLGSLF---RYNIEKKDSLVRV--F 497 Query: 418 LVKP 421 L++P Sbjct: 498 LIQP 501 >gi|319409865|emb|CBY90178.1| type IV pilus secretin PilQ [Neisseria meningitidis WUE 2594] Length = 761 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S + G +S T VL T Sbjct: 590 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 D +PLL IP++G LF R + +R E IFI Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747 >gi|255311391|ref|ZP_05353961.1| general secretion pathway protein D [Chlamydia trachomatis 6276] gi|296436106|gb|ADH18280.1| general secretion pathway protein D [Chlamydia trachomatis G/9768] gi|296437034|gb|ADH19204.1| general secretion pathway protein D [Chlamydia trachomatis G/11222] gi|296437966|gb|ADH20127.1| general secretion pathway protein D [Chlamydia trachomatis G/11074] gi|297140467|gb|ADH97225.1| general secretion pathway protein D [Chlamydia trachomatis G/9301] Length = 760 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%) Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +F+ +GG KG++ + F L +R A P++ ++ Q+ + + + + Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F+ Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689 Query: 414 ATP 416 TP Sbjct: 690 ITP 692 >gi|325131459|gb|EGC54166.1| type IV pilus secretin PilQ [Neisseria meningitidis M6190] gi|325137566|gb|EGC60147.1| type IV pilus secretin PilQ [Neisseria meningitidis ES14902] gi|325197687|gb|ADY93143.1| type IV pilus secretin PilQ [Neisseria meningitidis G2136] gi|325201543|gb|ADY96997.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240149] gi|325207524|gb|ADZ02976.1| type IV pilus secretin PilQ [Neisseria meningitidis NZ-05/33] Length = 769 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S + G +S T VL T Sbjct: 598 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 657 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 658 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 717 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 D +PLL IP++G LF R + +R E IFI Sbjct: 718 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 755 >gi|308389910|gb|ADO32230.1| pilQ protein [Neisseria meningitidis alpha710] Length = 761 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S + G +S T VL T Sbjct: 590 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 D +PLL IP++G LF R + +R E IFI Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747 >gi|254804373|ref|YP_003082594.1| fimbrial assembly protein; pilus secretin [Neisseria meningitidis alpha14] gi|304388332|ref|ZP_07370446.1| type IV pilus secretin PilQ [Neisseria meningitidis ATCC 13091] gi|254667915|emb|CBA04080.1| fimbrial assembly protein; pilus secretin [Neisseria meningitidis alpha14] gi|254670030|emb|CBA04815.1| fimbrial assembly protein [Neisseria meningitidis alpha153] gi|261393150|emb|CAX50762.1| type IV pilus secretin PilQ [Neisseria meningitidis 8013] gi|304337694|gb|EFM03849.1| type IV pilus secretin PilQ [Neisseria meningitidis ATCC 13091] gi|325133588|gb|EGC56249.1| type IV pilus secretin PilQ [Neisseria meningitidis M13399] gi|325141680|gb|EGC64140.1| type IV pilus secretin PilQ [Neisseria meningitidis 961-5945] Length = 761 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S + G +S T VL T Sbjct: 590 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 D +PLL IP++G LF R + +R E IFI Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747 >gi|325143815|gb|EGC66131.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240013] Length = 801 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S + G +S T VL T Sbjct: 630 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 689 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 690 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 749 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 D +PLL IP++G LF R + +R E IFI Sbjct: 750 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 787 >gi|237803001|ref|YP_002888195.1| general secretion pathway protein D [Chlamydia trachomatis B/Jali20/OT] gi|231274235|emb|CAX11029.1| general secretion pathway protein D [Chlamydia trachomatis B/Jali20/OT] Length = 760 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%) Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +F+ +GG KG++ + F L +R A P++ ++ Q+ + + + + Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F+ Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689 Query: 414 ATP 416 TP Sbjct: 690 ITP 692 >gi|149200052|ref|ZP_01877077.1| ComE [Lentisphaera araneosa HTCC2155] gi|149136810|gb|EDM25238.1| ComE [Lentisphaera araneosa HTCC2155] Length = 813 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/282 (21%), Positives = 112/282 (39%), Gaps = 55/282 (19%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------FAADFGGKFVSEGGDFSVK 248 Q++++ +V + +++GF TG + P+ + FA G +E D +++ Sbjct: 515 QISVETKFIDVDFNTTQELGFMWRWTGPRT-PNHTLTGDRIFAQSNDGATAAERFDNNIR 573 Query: 249 G------------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G V + ++ AL+++ L+ P SG + Sbjct: 574 GINEIVTSQEGPVQLAADLVFGNQELQMMVRALDQSDTSEVLSSPNAVTQSGNTVVLRVV 633 Query: 291 GQHL----YKTVSSSTGATSVTT------HDYGVVLHFTPTV----------LSPGRIGL 330 + ++ A TT D GV+L TP V L+P ++ L Sbjct: 634 EERFLPEEWEEAQLDADAIIPTTPTFGEARDIGVILEVTPEVSADNNTISMDLNPQQVEL 693 Query: 331 R-IQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 TE++ + MP +R+ +T ++ G T+++ GL+K+ + Sbjct: 694 LGYDTELNSDLTNFTDSITYPNFFNYAMPIVSIRQVETRAQIWDGETLLIGGLVKETVYS 753 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 + + IP +S IP LG F+N E+T + I T L+ PV Sbjct: 754 VDDSIPYVSDIPYLGRFFQNKGERSEKTNLLIFVTGRLISPV 795 >gi|325204768|gb|ADZ00222.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240355] Length = 761 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S + G +S T VL T Sbjct: 590 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 D +PLL IP++G LF R + +R E IFI Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747 >gi|325135596|gb|EGC58213.1| type IV pilus secretin PilQ [Neisseria meningitidis M0579] Length = 761 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S + G +S T VL T Sbjct: 590 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 D +PLL IP++G LF R + +R E IFI Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747 >gi|262380438|ref|ZP_06073592.1| general secretion pathway protein D [Acinetobacter radioresistens SH164] gi|262297884|gb|EEY85799.1| general secretion pathway protein D [Acinetobacter radioresistens SH164] Length = 718 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 5/176 (2%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L F + L AL+ ++ P + Q A SG Q Y++ S GA +V+T Sbjct: 541 LSDFMLDLELSALQADGYGEVISTPKVLTADKQQARVASGTQIPYQS-SEGGGANAVSTT 599 Query: 311 ---DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D + L+ TP++ G+I + + P G + + + +T V + +G T Sbjct: 600 EFVDATLSLNVTPSITPDGKIQMLLNITSDTPGNPTPTGQI-AINKNEINTNVLVNNGET 658 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +VL G+ + + + + +P+L +P +G LFR + + E+ I TP +V A Sbjct: 659 VVLGGIFEQETRNTQTKVPVLGDLPGVGRLFRRDAKSDNKRELLIFVTPRIVNDSA 714 >gi|255317692|ref|ZP_05358938.1| general secretion pathway protein D [Chlamydia trachomatis 6276s] Length = 760 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%) Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +F+ +GG KG++ + F L +R A P++ ++ Q+ + + + + Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F+ Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689 Query: 414 ATP 416 TP Sbjct: 690 ITP 692 >gi|115350365|ref|YP_772204.1| type IV pilus secretin PilQ [Burkholderia ambifaria AMMD] gi|115280353|gb|ABI85870.1| type IV pilus secretin PilQ [Burkholderia ambifaria AMMD] Length = 553 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 10/133 (7%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ IG P+ Sbjct: 394 GSELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPA 451 Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + T VE+ +GGT+ + G L +DD+ + +PLL KIP+LGALFR+ + Sbjct: 452 IHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTR----VPLLGKIPVLGALFRHRARRDQ 507 Query: 407 ETEIFIAATPFLV 419 +E+ + TP +V Sbjct: 508 RSELVVFITPTVV 520 >gi|76789309|ref|YP_328395.1| general secretion pathway protein D [Chlamydia trachomatis A/HAR-13] gi|76167839|gb|AAX50847.1| general secretion pathway protein D [Chlamydia trachomatis A/HAR-13] Length = 760 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%) Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +F+ +GG KG++ + F L +R A P++ ++ Q+ + + + + Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F+ Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689 Query: 414 ATP 416 TP Sbjct: 690 ITP 692 >gi|15605301|ref|NP_220087.1| general secretion pathway protein D [Chlamydia trachomatis D/UW-3/CX] gi|3329013|gb|AAC68174.1| Gen. Secretion Protein D [Chlamydia trachomatis D/UW-3/CX] gi|297748702|gb|ADI51248.1| General secretion pathway protein D [Chlamydia trachomatis D-EC] gi|297749582|gb|ADI52260.1| General secretion pathway protein D [Chlamydia trachomatis D-LC] Length = 760 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%) Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +F+ +GG KG++ + F L +R A P++ ++ Q+ + + + + Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F+ Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689 Query: 414 ATP 416 TP Sbjct: 690 ITP 692 >gi|255507170|ref|ZP_05382809.1| general secretion pathway protein D [Chlamydia trachomatis D(s)2923] gi|296435178|gb|ADH17356.1| general secretion pathway protein D [Chlamydia trachomatis E/150] gi|296438898|gb|ADH21051.1| general secretion pathway protein D [Chlamydia trachomatis E/11023] Length = 760 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%) Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +F+ +GG KG++ + F L +R A P++ ++ Q+ + + + + Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F+ Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689 Query: 414 ATP 416 TP Sbjct: 690 ITP 692 >gi|323957549|gb|EGB53264.1| general secretion pathway protein D [Escherichia coli H263] Length = 615 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 9/157 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 L GL+ D + +PLL IP++G LF+++ +E Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612 >gi|319956469|ref|YP_004167732.1| pilus (msha type) biogenesis protein mshl [Nitratifractor salsuginis DSM 16511] gi|319418873|gb|ADV45983.1| pilus (MSHA type) biogenesis protein MshL [Nitratifractor salsuginis DSM 16511] Length = 511 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 24/216 (11%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 +D G G F+ G L VL L+ + ++ P + ++ Q A + G Sbjct: 295 GSDIGDYLPGGGISFTFSGDLTE-----VLKFLKTQGDVTVVSSPRVMTLNNQPAMISVG 349 Query: 291 GQHLYK-TVSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 + YK T ++ G + T + G++L TP V G I L+I ++ Sbjct: 350 QEIYYKLTTTNKVGGSDTATSENEEVKSVFAGILLDITPEVDERGMITLKINPSITALAN 409 Query: 342 GVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +A ++ P + R+ + +++ G +L GL+ +EG+P+L IPIL Sbjct: 410 EEDAKNLQGVRTMPPDIKRRQIASVIKIKDGDHAILGGLITRGHGTKEEGLPVLENIPIL 469 Query: 395 GALFRNSRFNREETEIFIAATPFLV---KPVAMRDL 427 G F+ + E+ + TP ++ + V ++DL Sbjct: 470 GYAFKKEQKIDYTDELVLIITPHIIRNNRNVTLKDL 505 >gi|194097721|ref|YP_002000762.1| PilQ [Neisseria gonorrhoeae NCCP11945] gi|240124975|ref|ZP_04737861.1| PilQ [Neisseria gonorrhoeae SK-92-679] gi|240127489|ref|ZP_04740150.1| PilQ [Neisseria gonorrhoeae SK-93-1035] gi|254493004|ref|ZP_05106175.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae 1291] gi|268683559|ref|ZP_06150421.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae SK-92-679] gi|268685861|ref|ZP_06152723.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae SK-93-1035] gi|193933011|gb|ACF28835.1| PilQ [Neisseria gonorrhoeae NCCP11945] gi|226512044|gb|EEH61389.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae 1291] gi|268623843|gb|EEZ56243.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae SK-92-679] gi|268626145|gb|EEZ58545.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae SK-93-1035] Length = 731 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/261 (21%), Positives = 111/261 (42%), Gaps = 26/261 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K+++ L++ + QV ++ I E + +G + TG +++ A +G Sbjct: 465 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523 Query: 242 GGD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 GGD S+ + + L A E + +TLA P + + + Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPVI 341 A SG + + ++S G S T VL T P + G+I + ++ P Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643 Query: 342 GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-- 398 + + + + +T + +GGT+++ G+ +++ +PLL IP++G LF Sbjct: 644 CASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703 Query: 399 RNSRFNREETEIFIAATPFLV 419 R + +R E IFI TP ++ Sbjct: 704 RGKKTDRRELLIFI--TPRII 722 >gi|307297353|ref|ZP_07577159.1| type II and III secretion system protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916613|gb|EFN46995.1| type II and III secretion system protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 3898 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 9/158 (5%) Query: 272 LAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTG-ATSVTTHDY---GVVLHFTPTVLSP 325 ++ P++ ++SG+ A G +L +T+ G + T +Y GV L TPTV Sbjct: 3742 ISSPSIVSMSGEEAKIHIGDTIPYLVRTIEYVEGNPVEIETIEYLNTGVELRITPTVNDD 3801 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G+I L + +VSEP V+ G Y + R+A++ + + G T+ + GL+ + Sbjct: 3802 GKILLDLFIKVSEPEKYVD-GTRTLYGEKTREANSRLIISDGNTLTIGGLVANKDTVTVN 3860 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P LS +P +G LF ++ E+ I T +V+P Sbjct: 3861 KMPFLSDLPFIGKLFTTENKTSDKRELVIFITAEVVEP 3898 >gi|291297113|ref|YP_003508511.1| type II and III secretion system protein [Meiothermus ruber DSM 1279] gi|290472072|gb|ADD29491.1| type II and III secretion system protein [Meiothermus ruber DSM 1279] Length = 509 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 37/251 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGD--FSVKGVL 251 QV L++ + V ++++ +G + +++G + F+S G + F L Sbjct: 276 QVQLQIRVQAVSGEVIRNLGIKWETVSG----------GNLIASFLSTGLNLIFDATRSL 325 Query: 252 DRFSFETVLHALERATAIRTLAEPT-------------LTAISGQSASFTSGGQHLYKTV 298 + VL ALE+ R L++ L A + A GG+ L Sbjct: 326 ASLNIRAVLDALEKQQLSRRLSDANVLVEDNYGADTSDLRATGAKGAEIKVGGRLLIPIT 385 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SYRVRKA 356 +V DYG+++ P + + G I L + T+ G + D P S R+ + Sbjct: 386 IGD--QITVREFDYGLLVRVRPQISTDGNILLEVFTQT-----GGDPADGPAGSIRIPQQ 438 Query: 357 DTTVELP--SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T +L G T+VL GL++ + IPLL IP+LG LF+ + ++ E+ + Sbjct: 439 STLSKLRIRDGQTVVLGGLIQKVTDTSETKIPLLGDIPLLGELFKQRTSSIKDDELIVII 498 Query: 415 TPFLVKPVAMR 425 T +VK A R Sbjct: 499 TGNIVKDSAQR 509 >gi|257470110|ref|ZP_05634202.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC 49185] Length = 563 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/271 (22%), Positives = 111/271 (40%), Gaps = 27/271 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEGGDFSVK---GV 250 QV + I +V ++ + +GF + S S +K GK EG S + Sbjct: 283 QVRITSQILDVTDNLFENLGFDWLYSNSGSIEKNKGLDISLIGKAAVEGAGVSFGSGINL 342 Query: 251 LDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 + +F+ ++ L+ + A P++ G+ F + + T Sbjct: 343 IRQFNDGNDILGLGINLLQATQDLVISAMPSILVADGEEGEFKITEEVIVGEEKKENDNT 402 Query: 306 SVTTH-----DYGVVLHFTPTVLSPGRIGLRIQTEVS--------EPVIGVNAGDMPSY- 351 TT+ + G++L P + G I L++ EVS + I + G S Sbjct: 403 EKTTYTPLFREAGIILKVKPLIKENGIIFLKVMIEVSNFRLKKSEQENISSDGGTYNSEG 462 Query: 352 --RV-RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ R +TTV++ G TI + GL + +Q L IP L +P++ F+N RE T Sbjct: 463 GSKIGRSIETTVKMKDGETIFIGGLKRAVVQNLDSRIPFLGTLPVINIFFKNQSVKREIT 522 Query: 409 EIFIAATPFLVKPVAMRD-LSRPDDHYSVED 438 +I+I + K +D + + H ++D Sbjct: 523 DIYIKLKVDIEKDSWEKDSFDKTELHQKIKD 553 >gi|167587730|ref|ZP_02380118.1| type IV pilus secretin PilQ [Burkholderia ubonensis Bu] Length = 499 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 11/164 (6%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+ G + V + L Sbjct: 310 LSALEAQGRGQIVSSPRVVTADRAKAIVEQGAELPYQ-AKVGNGVSGVQFRRATLKLEVE 368 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG----LLK 375 P + GR+ L + +V++ +G P+ + T VE+ GGT+ + G L + Sbjct: 369 PQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVEDGGTVAIGGIYEQLRR 426 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 DD+ + +PLL KIPILGALFR+ + +E+ + TP +V Sbjct: 427 DDVTR----VPLLGKIPILGALFRHRAQRDQRSELVVFITPTVV 466 >gi|237756260|ref|ZP_04584819.1| type IV pilus secretin PilQ [Sulfurihydrogenibium yellowstonense SS-5] gi|237691579|gb|EEP60628.1| type IV pilus secretin PilQ [Sulfurihydrogenibium yellowstonense SS-5] Length = 602 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 24/247 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSKS---FAADFGGKF 238 Q+ ++ I +V LK +G Q ITG S S +A DF Sbjct: 356 QIAIEARIVQVSTSNLKDLGIQWGGRATNIDNNNTKIITGGGSTSIISGGRYAVDFPSSS 415 Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + G F++ G L F + L AL+ + L++P + I G++A + G + Y Sbjct: 416 ATFPGGFAIGFVFGGLQNF-LDVRLSALQSIGKSKILSKPQIVTIDGETAEISQGYEVPY 474 Query: 296 KTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 T ++ G T SV+ + L+ TP + G I + + P P + Sbjct: 475 TTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDLIITQDIPDFKNLILGNPPIQT 534 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET-EIFI 412 + + V G + + G+L+ G+P L IPILG LF+ ++ +E+T E+ I Sbjct: 535 KTVTSKVVAKDGSVVAIGGILEKTEDVKDSGVPGLMNIPILGYLFK-EKYQQEKTNELLI 593 Query: 413 AATPFLV 419 +P +V Sbjct: 594 FLSPKIV 600 >gi|172059384|ref|YP_001807036.1| type IV pilus secretin PilQ [Burkholderia ambifaria MC40-6] gi|171991901|gb|ACB62820.1| type IV pilus secretin PilQ [Burkholderia ambifaria MC40-6] Length = 553 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 10/133 (7%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ IG P+ Sbjct: 394 GSELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPA 451 Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + T VE+ +GGT+ + G L +DD+ + +PLL KIP+LGALFR+ + Sbjct: 452 IHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTR----VPLLGKIPVLGALFRHRARRDQ 507 Query: 407 ETEIFIAATPFLV 419 +E+ + TP +V Sbjct: 508 RSELVVFITPTVV 520 >gi|117926538|ref|YP_867155.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1] gi|117610294|gb|ABK45749.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1] Length = 830 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 30/192 (15%) Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------------- 304 + + AL + + L+ P + A++ Q+A ++ TV + G+ Sbjct: 385 STVRALAKFGNTKVLSSPKIMALNNQTAVLKVVDNTVFFTVEAEAGSSANASGGTDTTAL 444 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGD---MPSYR 352 T V T G+V+ TP + + + L ++ VS+P +NAG +P + Sbjct: 445 INTRVHTVPVGLVMSVTPQISADDVVTLNVRPTISSVSRWVSDPNPHLNAGVENLIPEIQ 504 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 V++ ++ + + SG V+ GL++D I ++ G+PL+S++P +G LF +TE+ I Sbjct: 505 VKEMESILRVHSGQITVMGGLMQDKISKVDTGLPLISQVPGIGGLFGYKEKTVSKTELVI 564 Query: 413 AATPFLVKPVAM 424 ++PV M Sbjct: 565 -----FMRPVVM 571 >gi|91785421|ref|YP_560627.1| putative fimbrial type-4 assembly signal peptide, PilQ-like [Burkholderia xenovorans LB400] gi|91689375|gb|ABE32575.1| Putative fimbrial type-4 assembly signal peptide, PilQ-like protein [Burkholderia xenovorans LB400] Length = 567 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 14/136 (10%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P ++ GR+ L + +V++ +G P+ Sbjct: 438 GTELPYQAKVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPA 495 Query: 351 YRVRKADTTVELPSGGTIVLAGLL----KDDIQQLKEGIPLLSKIPILGALFRNS--RFN 404 + T VE+ GGT+ + G+ +DD+ Q +PLL KIP+LGALFR+ R Sbjct: 496 INTKHVQTRVEVEDGGTVSIGGIYATDDRDDVTQ----VPLLGKIPVLGALFRHRAHRDR 551 Query: 405 REETEIFIAATPFLVK 420 R E +FI TP +V+ Sbjct: 552 RSELAVFI--TPRVVQ 565 >gi|59800555|ref|YP_207267.1| hypothetical protein NGO0094 [Neisseria gonorrhoeae FA 1090] gi|240117229|ref|ZP_04731291.1| hypothetical protein NgonPID_02009 [Neisseria gonorrhoeae PID1] gi|268602920|ref|ZP_06137087.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID1] gi|293397705|ref|ZP_06641911.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae F62] gi|62900657|sp|Q5FAD2|PILQ_NEIG1 RecName: Full=Type IV pilus biogenesis and competence protein pilQ; AltName: Full=Outer membrane protein omc; Flags: Precursor gi|59717450|gb|AAW88855.1| pilus secretion protein [Neisseria gonorrhoeae FA 1090] gi|268587051|gb|EEZ51727.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID1] gi|291611651|gb|EFF40720.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae F62] Length = 723 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/261 (21%), Positives = 111/261 (42%), Gaps = 26/261 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K+++ L++ + QV ++ I E + +G + TG +++ A +G Sbjct: 457 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 515 Query: 242 GGD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 GGD S+ + + L A E + +TLA P + + + Sbjct: 516 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 575 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPVI 341 A SG + + ++S G S T VL T P + G+I + ++ P Sbjct: 576 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 635 Query: 342 GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-- 398 + + + + +T + +GGT+++ G+ +++ +PLL IP++G LF Sbjct: 636 CASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 695 Query: 399 RNSRFNREETEIFIAATPFLV 419 R + +R E IFI TP ++ Sbjct: 696 RGKKTDRRELLIFI--TPRII 714 >gi|237804923|ref|YP_002889077.1| general secretion pathway protein D [Chlamydia trachomatis B/TZ1A828/OT] gi|231273223|emb|CAX10136.1| general secretion pathway protein D [Chlamydia trachomatis B/TZ1A828/OT] Length = 760 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%) Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +F+ +GG KG++ + F L +R A P++ ++ Q+ + + + + Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F+ Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMGSASDSQTEMFMF 689 Query: 414 ATP 416 TP Sbjct: 690 ITP 692 >gi|161869408|ref|YP_001598575.1| type IV pilus assembly protein PilQ [Neisseria meningitidis 053442] gi|218767605|ref|YP_002342117.1| pilus secretin [Neisseria meningitidis Z2491] gi|62287129|sp|Q9JVW4|PILQ_NEIMA RecName: Full=Type IV pilus biogenesis and competence protein pilQ; Flags: Precursor gi|121051613|emb|CAM07913.1| pilus secretin [Neisseria meningitidis Z2491] gi|161594961|gb|ABX72621.1| type IV pilus assembly protein PilQ [Neisseria meningitidis 053442] gi|325129552|gb|EGC52376.1| type IV pilus secretin PilQ [Neisseria meningitidis OX99.30304] Length = 761 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S + G +S T VL T Sbjct: 590 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 D +PLL IP++G LF R + +R E IFI Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747 >gi|220933412|ref|YP_002512311.1| general secretion pathway protein D [Thioalkalivibrio sp. HL-EbGR7] gi|219994722|gb|ACL71324.1| general secretion pathway protein D [Thioalkalivibrio sp. HL-EbGR7] Length = 655 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 69/272 (25%), Positives = 118/272 (43%), Gaps = 31/272 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-----SKSFAADFGG 236 + V+N L++ QV ++ IAEV D + ++G Q + +SG ++S + G Sbjct: 321 RAVINQLDVR-RAQVLVEAVIAEVSYDKITELGVQWGVGNPNSGVGVINFNRSGSGIIG- 378 Query: 237 KFVSEGGDFSVKGVLDR--------------FSFETVLHALERATA----IRTLAEPTLT 278 V+ G D ++G + S T + AL RA A L+ P+L Sbjct: 379 --VAGGIDAFLRGAVATPPNLGDGAFLGGIGTSGSTTIAALVRALAGDSSSNILSTPSLM 436 Query: 279 AISGQSASFTSGGQHLY---KTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + + A G + +++ S A ++ D GV L P + I L I+ Sbjct: 437 TMDNEEAEIVVGQNVPFIAGRSIEQSGQAFDTIQRQDVGVKLRIKPQINEGNSIRLEIEQ 496 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EVS+ G A R T V + G +VL GL+ D + Q ++ +P L IP + Sbjct: 497 EVSQVAAGATAAADLVTNKRSLRTIVMVDDGEMVVLGGLIDDVLVQTQDRVPGLGSIPGV 556 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 G LFR +E+ + + P +V+ A+++ Sbjct: 557 GRLFRYDTARKEKRNLMVFLHPVIVRDSAVQE 588 >gi|171318673|ref|ZP_02907818.1| type IV pilus secretin PilQ [Burkholderia ambifaria MEX-5] gi|171096140|gb|EDT41064.1| type IV pilus secretin PilQ [Burkholderia ambifaria MEX-5] Length = 553 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 10/133 (7%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ IG P+ Sbjct: 394 GSELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPA 451 Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + T VE+ +GGT+ + G L +DD+ + +PLL KIP+LGALFR+ + Sbjct: 452 IHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTR----VPLLGKIPVLGALFRHRARRDQ 507 Query: 407 ETEIFIAATPFLV 419 +E+ + TP +V Sbjct: 508 RSELVVFITPTVV 520 >gi|270284835|ref|ZP_06194229.1| Type III secretion structural protein (outer membrane ring) [Chlamydia muridarum Nigg] gi|270288864|ref|ZP_06195166.1| Type III secretion structural protein (outer membrane ring) [Chlamydia muridarum Weiss] gi|301336215|ref|ZP_07224417.1| Type III secretion structural protein (outer membrane ring) [Chlamydia muridarum MopnTet14] Length = 918 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYG 313 +L AL++ + P + A Q ASF G ++T S+ TG+ + + D G Sbjct: 698 LLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEYEDIG 757 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 758 VNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLVMSGH 816 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D + ++ G+PLLS +P++ LF + R++ I I P ++ Sbjct: 817 IRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVI 862 >gi|149178109|ref|ZP_01856704.1| general secretion pathway protein D (Precursor) [Planctomyces maris DSM 8797] gi|148843029|gb|EDL57397.1| general secretion pathway protein D (Precursor) [Planctomyces maris DSM 8797] Length = 1307 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 23/232 (9%) Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 FGG +S + SV ++ + + +H L R IRT+ T GQ +G Sbjct: 1013 FGGLVLSASSE-SVSILIRALAAKRNVHVLSRPQ-IRTVDNVTAQIQVGQIVPVVNG--- 1067 Query: 294 LYKTVSSSTGATSVTTH-DYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGV--- 343 +V++ A V + G++L TP + G I + Q E S+ P+ Sbjct: 1068 --VSVTAVGSANPVIQQSEAGIILTVTPRISPDGNIVMETQAEKSDFNGSSVPIFTDATT 1125 Query: 344 -NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 N + P + + TTV +P+G T+VL G++ + ++ +P L IP++G FR Sbjct: 1126 GNVVESPIKNITQVQTTVSVPNGQTVVLGGMITESDTTIERKVPWLGDIPLIGIPFRYDY 1185 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 + E+ + TP +++ A + + VE + + +++GP Sbjct: 1186 SSTRRKELLVFLTPRIIRNDADSEFIK-----QVESERIHLQVEKAEQMHGP 1232 >gi|255348953|ref|ZP_05380960.1| general secretion pathway protein D [Chlamydia trachomatis 70] gi|255503492|ref|ZP_05381882.1| general secretion pathway protein D [Chlamydia trachomatis 70s] Length = 760 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 9/183 (4%) Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +F+ +GG KG++ + F L +R A P++ ++ Q+ + + + + Sbjct: 516 EFLFKGG---AKGIVPSYDF--AYQFLMAQEDVRINASPSVVTMN-QTPARIAIVEEMSI 569 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 570 VVSSDKDKAQYNRAQYGIMIKILPIINIGEEDGKSFITLETDITFDSTGRNHADRPDVTR 629 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F+ Sbjct: 630 RNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMF 689 Query: 414 ATP 416 TP Sbjct: 690 ITP 692 >gi|240114943|ref|ZP_04729005.1| PilQ [Neisseria gonorrhoeae PID18] gi|240122781|ref|ZP_04735737.1| PilQ [Neisseria gonorrhoeae PID332] gi|260441241|ref|ZP_05795057.1| PilQ [Neisseria gonorrhoeae DGI2] gi|268600608|ref|ZP_06134775.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID18] gi|268681392|ref|ZP_06148254.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID332] gi|291044580|ref|ZP_06570289.1| type IV pilus assembly protein PilQ [Neisseria gonorrhoeae DGI2] gi|268584739|gb|EEZ49415.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID18] gi|268621676|gb|EEZ54076.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID332] gi|291011474|gb|EFE03470.1| type IV pilus assembly protein PilQ [Neisseria gonorrhoeae DGI2] Length = 731 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/261 (21%), Positives = 111/261 (42%), Gaps = 26/261 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K+++ L++ + QV ++ I E + +G + TG +++ A +G Sbjct: 465 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523 Query: 242 GGD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 GGD S+ + + L A E + +TLA P + + + Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPVI 341 A SG + + ++S G S T VL T P + G+I + ++ P Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643 Query: 342 GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-- 398 + + + + +T + +GGT+++ G+ +++ +PLL IP++G LF Sbjct: 644 CASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703 Query: 399 RNSRFNREETEIFIAATPFLV 419 R + +R E IFI TP ++ Sbjct: 704 RGKKTDRRELLIFI--TPRII 722 >gi|189424346|ref|YP_001951523.1| general secretion pathway protein D [Geobacter lovleyi SZ] gi|189420605|gb|ACD95003.1| general secretion pathway protein D [Geobacter lovleyi SZ] Length = 648 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 96/216 (44%), Gaps = 21/216 (9%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYG 313 +L ALE + L+ P + + A G +K SSST +T SV D G Sbjct: 436 ILQALESEGMLNILSTPNILTTDNKEAEINVGENVPFK--SSSTQSTFGTTESVERKDIG 493 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLA 371 + L P V I + + E+S + + GD R A T+V + TIV+ Sbjct: 494 INLKIKPQVSEGDYIRMDLYQEIS--AVKSDKGDAVDLVTTKRSAKTSVVVKDNETIVIG 551 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL++D + +PLL IP LG F+ + R++T + I TP +VK RDL+ Sbjct: 552 GLIQDTEDNTIQKVPLLGDIPGLGWFFKTTTKTRKKTNLLIMLTPQVVKDA--RDLA--- 606 Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEA-SEVEGQNYK 466 S+ + K F K +GP +E+ G+ K Sbjct: 607 ---SITESQKG-KFTEAAKEFGPLNVQNEISGKATK 638 >gi|190575670|ref|YP_001973515.1| putative type II/III pilus secretin [Stenotrophomonas maltophilia K279a] gi|190013592|emb|CAQ47227.1| putative type II/III pilus secretin [Stenotrophomonas maltophilia K279a] Length = 655 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/173 (22%), Positives = 80/173 (46%), Gaps = 6/173 (3%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + + L A++ + ++ P + + + A G + Y T+S+ G + + Sbjct: 478 YLLDVELSAMQEESRGEVISNPRVVTTNQREALIKQGKEIGYVTISAGAGGVATPNVQFK 537 Query: 314 VV---LHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 V L TPT+ + R+ L +Q EV + G +PS R+ +T V + G T Sbjct: 538 EVVLELKVTPTITNDNRVFLNMQVKKDEVDRLIQLEGYGTVPSINRREVNTAVLVEDGQT 597 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +V+ G+ + + +P L +P LG LF+ ++++ E+ + TP +++ Sbjct: 598 VVIGGVYEFTDRNSISKVPFLGDVPFLGNLFKKRGRSKDKAELLVFVTPKVLR 650 >gi|239998226|ref|ZP_04718150.1| PilQ [Neisseria gonorrhoeae 35/02] gi|240112199|ref|ZP_04726689.1| PilQ [Neisseria gonorrhoeae MS11] gi|268594082|ref|ZP_06128249.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae 35/02] gi|268598258|ref|ZP_06132425.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae MS11] gi|268547471|gb|EEZ42889.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae 35/02] gi|268582389|gb|EEZ47065.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae MS11] gi|317163512|gb|ADV07053.1| PilQ [Neisseria gonorrhoeae TCDC-NG08107] Length = 731 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/261 (21%), Positives = 110/261 (42%), Gaps = 26/261 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K+++ L++ + QV ++ I E + +G + TG +++ A +G Sbjct: 465 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523 Query: 242 GGD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 GGD S+ + + L A E + +TLA P + + + Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPV- 340 A SG + + ++S G S T VL T P + G+I + ++ P Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-- 398 + + + +T + +GGT+++ G+ +++ +PLL IP++G LF Sbjct: 644 CASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703 Query: 399 RNSRFNREETEIFIAATPFLV 419 R + +R E IFI TP ++ Sbjct: 704 RGKKTDRRELLIFI--TPRII 722 >gi|291280567|ref|YP_003497401.1| hypothetical protein DEFDS_P017 [Deferribacter desulfuricans SSM1] gi|290755269|dbj|BAI81645.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 531 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 6/92 (6%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGG 366 GVVL F P V I L + ++ E + +P VR +TV++ SG Sbjct: 416 GVVLQFLPKVTDDNNIVLNLGVTINRLDKMDEKSLNGIILQLPQTSVRAVSSTVKMKSGQ 475 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 TIV+ G+L D+ +++ +PL+ IPILG LF Sbjct: 476 TIVIGGILSDNTNEIENKVPLVGDIPILGNLF 507 >gi|307731211|ref|YP_003908435.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1003] gi|307585746|gb|ADN59144.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1003] Length = 613 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 19/240 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFGGKFVSEGGDFS 246 QV ++ I E + +G + S+ G+S SG D + ++ G D + Sbjct: 377 QVLIEARIVEGEHGFSRNLGVRLSMAGTSADGSTRGLSGGKDGLVYDLSARPIA-GFDAA 435 Query: 247 VKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G L F+ L ALE + ++ P + A G + Y+ Sbjct: 436 TAG-LTLFAAGATRLLNIELSALEAEGRGQVVSSPRVVTADRMKAVVEQGTELPYQA-KV 493 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G + V + L P ++ GR+ L + +V++ +G P+ + T V Sbjct: 494 GQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRV 551 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 E+ GGT+ + G+ D + +P+L KIP+LGALFR+ + +E+ + TP +V+ Sbjct: 552 EVEDGGTVSIGGIYATDGRDDVTRVPVLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 611 >gi|170700771|ref|ZP_02891764.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] gi|170134335|gb|EDT02670.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] Length = 244 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 10/108 (9%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG--- 372 L P + GR+ L + +V++ IG P+ + T VE+ +GGT+ + G Sbjct: 110 LEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYE 167 Query: 373 -LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L +DD+ + +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 168 QLNRDDVTR----VPLLGKIPVLGALFRHRARRDQRSELVVFITPTVV 211 >gi|163802024|ref|ZP_02195920.1| putative type III secretion protein YscC [Vibrio sp. AND4] gi|159174165|gb|EDP58973.1| putative type III secretion protein YscC [Vibrio sp. AND4] Length = 623 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 13/217 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + ++ + ++I ++ + L Q+G G++S D G V+ G + K Sbjct: 291 QSRIEVALSIVDISANDLSQLGIDWRAGIGAGNNSVLDIKTTGDVAGGDVTLGSGQTFKS 350 Query: 250 VLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 +LD + +L LE + + ++ PTL A + K + T A Sbjct: 351 LLDVTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLIGKETAALE 410 Query: 307 VTTHDYGVVLHFTPTVLSP-----GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 T YG +L P ++ I L + E + D+PS R + T Sbjct: 411 EVT--YGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSIRKTEISTLAT 468 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G ++++ G+ +D+I +PLL IP LGALF Sbjct: 469 VKQGQSLLIGGVYRDEISHQLRKVPLLGDIPYLGALF 505 >gi|240013410|ref|ZP_04720323.1| PilQ [Neisseria gonorrhoeae DGI18] gi|240015851|ref|ZP_04722391.1| PilQ [Neisseria gonorrhoeae FA6140] gi|240120480|ref|ZP_04733442.1| PilQ [Neisseria gonorrhoeae PID24-1] Length = 731 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/261 (21%), Positives = 110/261 (42%), Gaps = 26/261 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K+++ L++ + QV ++ I E + +G + TG +++ A +G Sbjct: 465 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523 Query: 242 GGD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 GGD S+ + + L A E + +TLA P + + + Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPV- 340 A SG + + ++S G S T VL T P + G+I + ++ P Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-- 398 + + + +T + +GGT+++ G+ +++ +PLL IP++G LF Sbjct: 644 CASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703 Query: 399 RNSRFNREETEIFIAATPFLV 419 R + +R E IFI TP ++ Sbjct: 704 RGKKTDRRELLIFI--TPRII 722 >gi|269302606|gb|ACZ32706.1| putative general secretion pathway protein D [Chlamydophila pneumoniae LPCoLN] Length = 754 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 18/189 (9%) Query: 298 VSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 VSS YG+++ P + G+ + ++T+++ G N D P R Sbjct: 566 VSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRR 625 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 V + G T+++ GL + +GIP L IP +G LF S + TE+F+ Sbjct: 626 NITNKVRIADGETVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFI 685 Query: 415 TP-FLVKPVAMRDL-------SRP---DDHYSVEDDAKAFFFNRVNKI-YGPKEA---SE 459 TP L PV ++ SRP +++Y ++A K+ P S+ Sbjct: 686 TPKILENPVEQQERKEEALLSSRPGEREEYYQALAASEAAARAAHKKLEVFPASGVSLSQ 745 Query: 460 VEGQNYKGA 468 VEGQ Y G Sbjct: 746 VEGQEYDGC 754 >gi|331654572|ref|ZP_08355572.1| general secretion pathway protein D [Escherichia coli M718] gi|331047954|gb|EGI20031.1| general secretion pathway protein D [Escherichia coli M718] Length = 615 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 9/157 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 L GL+ D + +PLL IP++G LF+++ +E Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 >gi|323946657|gb|EGB42679.1| general secretion pathway protein D [Escherichia coli H120] Length = 615 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 9/157 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 L GL+ D + +PLL IP++G LF+++ +E Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 >gi|152993261|ref|YP_001358982.1| general secretory pathway protein D [Sulfurovum sp. NBC37-1] gi|151425122|dbj|BAF72625.1| general secretory pathway protein D [Sulfurovum sp. NBC37-1] Length = 536 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 24/182 (13%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHF 318 ++ ++ P + ++ Q A + G + YK S+S T SV + G++L Sbjct: 348 VKAISSPRVMTLNNQPAMISVGKELFYKLKSTSALGTGNNANTAQGESVDSVFAGILLDI 407 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKA-DTTVELPSGGTIV 369 TP + + G I L+I +SE + + + DMP +R+ + V++ G + Sbjct: 408 TPEIGNNGIITLKINPSISETIEDIQTQKNTVTGSRDMPPDLIRRQIASVVKVKDGEHAI 467 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRN-SRFNREETEIFIAATPFLV---KPVAMR 425 L GL+ IPLL IP+L F++ + NR E E+ + TP +V K V ++ Sbjct: 468 LGGLITSSTGTKVNKIPLLGDIPLLEYAFKHEEKINRVE-ELVLIITPHIVKTSKSVTLK 526 Query: 426 DL 427 DL Sbjct: 527 DL 528 >gi|292493847|ref|YP_003529286.1| type IV pilus secretin PilQ [Nitrosococcus halophilus Nc4] gi|291582442|gb|ADE16899.1| type IV pilus secretin PilQ [Nitrosococcus halophilus Nc4] Length = 699 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 S Q+ + G + ++S+GATSV+ + L P + RI + + V++ Sbjct: 557 SNQNEALIEQGTEIPFQQATSSGATSVSFKKAVLSLKVVPQITPDDRIIMDLT--VNKDS 614 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +G +PS R+ T V + +G T+VL G+ + + + +P L +P +G LFR+ Sbjct: 615 VGQVFNGVPSIDTREVATQVLVDNGQTVVLGGIYEQEQNRASRRVPFLGDLPYVGTLFRD 674 Query: 401 SRFNREETEIFIAATPFLVK 420 + E+ I TP ++K Sbjct: 675 KSEVNNKDELLIFVTPKIIK 694 >gi|189424531|ref|YP_001951708.1| type II and III secretion system protein [Geobacter lovleyi SZ] gi|189420790|gb|ACD95188.1| type II and III secretion system protein [Geobacter lovleyi SZ] Length = 792 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 6/120 (5%) Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVN-AGDMPSYRVRKADTTVELPS 364 D GV ++ PT+ + +++ EVS E V G + A + + R DT + L Sbjct: 473 DVGVKVNAEPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTIGTRNLDTVLSLKD 532 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T V+ GL+ K+ I LL IP++G L NS+ + ++TE+ +A TP LV+ V + Sbjct: 533 GETSVIGGLISHSNSDSKQKIFLLGDIPLIGPLLSNSKTDNDKTELILAITPRLVRGVTV 592 >gi|323941937|gb|EGB38116.1| general secretion pathway protein D [Escherichia coli E482] Length = 615 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 9/157 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 L GL+ D + +PLL IP++G LF+++ +E Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 >gi|297537658|ref|YP_003673427.1| type II and III secretion system protein [Methylotenera sp. 301] gi|297257005|gb|ADI28850.1| type II and III secretion system protein [Methylotenera sp. 301] Length = 838 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 74/334 (22%), Positives = 142/334 (42%), Gaps = 56/334 (16%) Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 L+ D ++ ++ + +I + ++++V+ +D+ AV+L+E ++ N Sbjct: 290 LVNADAKQMQTMIKTMLKTKDIFIHEKTNSLVM-------RDTPEAVQLAEKLVAAQDLN 342 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSK 228 + +V L+V + EV + +IG Q S+T + S P+ Sbjct: 343 ------------------DPEVMLEVEVLEVLHSKMTEIGVQWPTQFGLSVTDAPSTPTT 384 Query: 229 SFAADFGGKF---------VSEGGDFSVKGVLDRFSFETVLHALERATA-IRTLAEPTLT 278 + GG ++ G ++ G + + ++L +++ LA P + Sbjct: 385 TVG--LGGAIQTTTPPPVPLTLEGLRNITGSNIKVTPLSLLLTMKKDVGDTNLLASPRIR 442 Query: 279 AISGQSASFTSGGQHLYKTVSS---STGATSVTTH----DYGVVLHFTPTVLSPGRIGLR 331 + A G + T S STG VT D G+ L P + G + ++ Sbjct: 443 VRQHEKAKIMIGDRVPVITNSVTPVSTGTPVVTGSVQYLDVGLKLEVEPDIHIDGEVAIK 502 Query: 332 IQTEVSE---PVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 EVS V +G + +Y++ R A T + L G T VL GL+ D+ ++ +P Sbjct: 503 TYLEVSNIANQVTNATSGTI-AYQIGTRNASTVLRLKDGETQVLGGLISDEDRKSASKVP 561 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L +PILG LF + ++ +TEI + TP +++ Sbjct: 562 GLGDLPILGRLFSSHNNSKTKTEIILFITPHIIR 595 >gi|332289551|ref|YP_004420403.1| putative outer membrane porin HofQ [Gallibacterium anatis UMN179] gi|330432447|gb|AEC17506.1| putative outer membrane porin HofQ [Gallibacterium anatis UMN179] Length = 380 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVTTHDYGVVLH 317 L ALE+ + +A P L + + AS G + ++ + + + T + + + L Sbjct: 194 LKALEQENNVEIIASPHLLTSNQRKASIKQGSEIPYVIEDDTERSSRTHIEFKEAVLGLE 253 Query: 318 FTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 TP VL G I L + + I AG + + ++ + V + G T+VL G+ Sbjct: 254 VTPQVLHQGVISLDLVVTQNSAGASIPYGAGQVVTIDKQEVQSQVLVRDGETVVLGGIFH 313 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 D I + + +PLL IP LG LF + ++ E+ I TP ++ Sbjct: 314 DLIGKGENKVPLLGDIPGLGKLFSSKSERHQKRELVIFITPRII 357 >gi|167840250|ref|ZP_02466934.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 303 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 142 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 198 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 199 LPMVVEEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 254 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P+LGALFR++ +E TP +++P Sbjct: 255 YKVDARSNTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 303 >gi|307720370|ref|YP_003891510.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] gi|306978463|gb|ADN08498.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] Length = 504 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 35/197 (17%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---------------T 297 FS L ++ ++ P + ++ Q A G Q YK T Sbjct: 291 NFSTSNFFKYLNTFGDVKVMSNPKILTMNNQPAVVNVGQQLSYKYQTGSVTTTGGTAAGT 350 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348 + S G+T + G+ L+ P + I + I PV+ + D Sbjct: 351 NTFSLGSTFI-----GITLYVIPEITDSNEILMSIN-----PVVSSLSADNTPTTSIREI 400 Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P ++++ + V++ +G +++ GL+ + + IP+L IPIL +FR + + Sbjct: 401 PPDTKIKQMTSVVKVKNGQKVLIGGLISATKGKDSKKIPILGDIPILSTIFRYTNNKKSR 460 Query: 408 TEIFIAATPFLVKPVAM 424 TE+FI TP +VK +M Sbjct: 461 TEMFILITPKIVKNSSM 477 >gi|317064333|ref|ZP_07928818.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC 49185] gi|313690009|gb|EFS26844.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC 49185] Length = 451 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 18/184 (9%) Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYGVVLHFTPTVLSPGR 327 A P++ G+ F + + T TT+ + G++L P + G Sbjct: 258 AMPSILVADGEEGEFKITEEVIVGEEKKENDNTEKTTYTPLFREAGIILKVKPLIKENGI 317 Query: 328 IGLRIQTEVS--------EPVIGVNAGDMPSY---RV-RKADTTVELPSGGTIVLAGLLK 375 I L++ EVS + I + G S ++ R +TTV++ G TI + GL + Sbjct: 318 IFLKVMIEVSNFRLKKSEQENISSDGGTYNSEGGSKIGRSIETTVKMKDGETIFIGGLKR 377 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD-LSRPDDHY 434 +Q L IP L +P++ F+N RE T+I+I + K +D + + H Sbjct: 378 AVVQNLDSRIPFLGTLPVINIFFKNQSVKREITDIYIKLKVDIEKDSWEKDSFDKTELHQ 437 Query: 435 SVED 438 ++D Sbjct: 438 KIKD 441 >gi|195952904|ref|YP_002121194.1| type II and III secretion system protein [Hydrogenobaculum sp. Y04AAS1] gi|195932516|gb|ACG57216.1| type II and III secretion system protein [Hydrogenobaculum sp. Y04AAS1] Length = 653 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 14/176 (7%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G F V G FE + ALE +++ + TL A++ Q S T G ++ + T+S+ Sbjct: 483 GKFHVLG------FE--IQALESINKAKSVFKSTLLAMNDQPTSLTQGIEYPFTTISTPG 534 Query: 303 GAT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 A +VT + + TP VL G+I L I + + + + A P+ ++ Sbjct: 535 QAVPTVTLQNVLNSIKVTPQVLPNGKILLNINIQ-NMSLGPLAANGQPTINQNSNSLSIV 593 Query: 362 LPSGGTIVLAGL-LKDDIQQLKEGIPLLSKIPILG--ALFRNSRFNREETEIFIAA 414 L G T+ + G+ LK++ L +GIP L K+PI+G + +N N IFI A Sbjct: 594 LSDGATLAIGGVGLKNESNGL-QGIPGLDKVPIIGNVGMTKNESKNNTNLFIFITA 648 >gi|297539729|ref|YP_003675498.1| type IV pilus secretin PilQ [Methylotenera sp. 301] gi|297259076|gb|ADI30921.1| type IV pilus secretin PilQ [Methylotenera sp. 301] Length = 728 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E + ++ P +T + A +G + Y SSS GA +V+ + L T Sbjct: 565 LTAMESDGHGKIVSSPRVTTANQHKAKIAAGTEIPYLEASSS-GAATVSFKSAVLSLEVT 623 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + +I + + +V + +G +PS + +T V + +G T VL G+ + ++ Sbjct: 624 PQITPDDKIIMEL--DVKKDRVGQVFSGVPSIETQNINTQVLVGNGETAVLGGIFEQTVR 681 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 E +P +PI+G LF+ ++ E+ I TP Sbjct: 682 NDVEKVPFFGDLPIMGNLFKKRTTQNDKQELLIFITP 718 >gi|115351491|ref|YP_773330.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] gi|115281479|gb|ABI86996.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] Length = 812 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 110/242 (45%), Gaps = 27/242 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + +VTL V + EV + +G Q+ P K GG EGG ++ +L Sbjct: 323 QSEVTLDVQVLEVNMNDSLDLGVQY--------PGKIQFNALGG---VEGGALTLGDLLR 371 Query: 252 ---DRFSFET-------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 DR + + L++ +TLA P + + + A+ G + T +++ Sbjct: 372 LNRDRVGVSSESGGLALAIDLLQKQGKTKTLANPKIRVRNMEKANIKIGERVPIVTTTNA 431 Query: 302 TGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRV--RKA 356 G SV+ D G++L P + + +++ EVS + + +Y + R A Sbjct: 432 NGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILTKETTKTGLVAYSLGTRNA 491 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T + +G T +LAGL+K + G+P +S +P+LG LF ++ + E +EI + TP Sbjct: 492 ETLMTAKNGETQILAGLVKRNESDSVAGLPGVSGLPVLGRLFGSNGRSNERSEIVLLITP 551 Query: 417 FL 418 + Sbjct: 552 HI 553 >gi|187925571|ref|YP_001897213.1| type IV pilus secretin PilQ [Burkholderia phytofirmans PsJN] gi|187716765|gb|ACD17989.1| type IV pilus secretin PilQ [Burkholderia phytofirmans PsJN] Length = 591 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 2/130 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P ++ GR+ L + +V++ +G P+ Sbjct: 462 GTELPYQAKVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPA 519 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ GGT+ + G+ D + +P+L KIP+LGALFR+ + +E+ Sbjct: 520 INTKHVQTRVEVEDGGTVSIGGIYATDDRDDVTRVPVLGKIPVLGALFRHRAHRDQRSEL 579 Query: 411 FIAATPFLVK 420 + TP +V+ Sbjct: 580 AVFITPRVVQ 589 >gi|40644697|emb|CAD91899.1| secretin precursor [Neisseria meningitidis serogroup B] Length = 761 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S + G +S T VL T Sbjct: 590 LSASESLSKPKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLT 649 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 650 VTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 709 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 D +PLL IP++G LF R + +R E IFI Sbjct: 710 DNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFI 747 >gi|330719673|gb|EGG98224.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC2047] Length = 419 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 23/206 (11%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-- 297 S GG FS L+ F ++ L +++ L+ P ++ ++ Q A G + T Sbjct: 200 SVGGVFS--AALNLKDFNALIDLLSTQGSVQVLSSPRISTVNNQKAVIKVGTDEFFVTEI 257 Query: 298 --------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGV 343 S+++ +T G+ L TP + G + L I VSE V+G Sbjct: 258 SSETTTNTSSTTSTDVELTPFFSGIALDVTPQISEEGEVVLHIHPTVSEVTDQTKTVVGP 317 Query: 344 NAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 N GD+ +R+ D+ V +G +V+ GL+++ P L +P+LG FR Sbjct: 318 N-GDLVLPLALSSIRETDSIVRARNGQVVVIGGLMQNSSTDNNAKTPFLGDLPLLGNAFR 376 Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425 R + ++E+ I P + A R Sbjct: 377 QKRQSSVKSELVILLKPIIADDDAWR 402 >gi|291333680|gb|ADD93369.1| type II and III secretion system protein [uncultured marine bacterium MedDCM-OCT-S01-C143] Length = 437 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIV 369 D + L TP V ++ L I ++ E V G++ A P R A T V + TIV Sbjct: 215 DVSLKLTLTPHVNERNKVRLDIDQQI-EDVAGIDEATGQPITAKRSAKTVVVVDDQQTIV 273 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GL++D + + + IP+L +P++G +FR + E+ + + TP++V+ + +D R Sbjct: 274 LGGLIRDRVSEGESKIPVLGDLPLIGWMFRQHTKDVEKVNLLLVLTPYVVR--SQQDFQR 331 >gi|224373284|ref|YP_002607656.1| general secretory pathway protein D [Nautilia profundicola AmH] gi|223589728|gb|ACM93464.1| general secretory pathway protein D [Nautilia profundicola AmH] Length = 445 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 16/190 (8%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------AT 305 FS +L+ L + + +L+ P + ++ Q A + G YK S T Sbjct: 250 FSVVGLLNFLAQNGNVNSLSNPKVVTLNNQKAIISVGDTIYYKYASKVTTDQNGNPNTEY 309 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMP-SYRVRKADTTV 360 ++ + GVVL TP + G I L I +S + DMP + + V Sbjct: 310 TIDSKFVGVVLDITPQISDNGDIILSIAPRISAFKDLTQLSNTTRDMPPDTKDNTMLSVV 369 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV- 419 +L T+VL GL+ +D G+P+L +IP++ LF + E+ TP ++ Sbjct: 370 KLKDNQTLVLGGLITNDKTLQVNGVPVLKEIPLIKYLFSSREEVTSRKELVFVITPHIIN 429 Query: 420 --KPVAMRDL 427 K +RDL Sbjct: 430 LKKKKTLRDL 439 >gi|223938688|ref|ZP_03630578.1| type II and III secretion system protein [bacterium Ellin514] gi|223892676|gb|EEF59147.1| type II and III secretion system protein [bacterium Ellin514] Length = 785 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 30/253 (11%) Query: 195 QVTLKVTIAEVRRDILKQIG---FQHSITGSS---------SGPSKSFAADFGGKFVSEG 242 QV ++ I EV D + +G Q S +G++ +GP SF+ +F + Sbjct: 493 QVLIEAIIMEVTLDDTRDLGVSYLQTSPSGNNYFQGIGAIKNGPFASFS-NFASTATNAA 551 Query: 243 GDF-SVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S L +F+ F + A I L+ P + +A+ G Y T + Sbjct: 552 NSLPSGFSYLAQFNNDFSATITAAATDNRINVLSRPRIQTSHAVTANLQIGDTVPYVTGT 611 Query: 300 SSTGATSVTTHDY-----GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSY 351 G + Y G+ L TP + G + + I +V + P I ++ +P+ Sbjct: 612 YFGGLNGQASSQYQQTFVGINLQVTPLINPDGLVVMDITQDVQQLGTPTI-IDNNPVPTT 670 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R A V + TI+L G + + K G+PLL IP+LG LFR++ + + TE+ Sbjct: 671 TKRTAQAKVSVKDRDTIILGGFISSTKSRSKSGVPLLMNIPVLGYLFRSTSDSNKRTELI 730 Query: 412 IAATPFLVKPVAM 424 + L++P + Sbjct: 731 V-----LIRPTVL 738 >gi|182412463|ref|YP_001817529.1| type II and III secretion system protein [Opitutus terrae PB90-1] gi|177839677|gb|ACB73929.1| type II and III secretion system protein [Opitutus terrae PB90-1] Length = 596 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 12/155 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH-----LYKTVSSSTGATSVTTH 310 F V+ AL T + ++ PT+ ++ A G ++ Y S T Sbjct: 365 FGLVISALNELTTAKVVSNPTVVTLNNTEAFINIGKEYPIPNYTYNEQRGSFEVAGFTYK 424 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PVIGVNAGDMPSYRVRKADTTVELP 363 G++L TP V + G I L I+ EVS G +P + +KA T + L Sbjct: 425 PIGIILKVTPQVNARGFIKLMIEPEVSSFNDADSVNFGGATGARIPVIQTKKARTQISLK 484 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G T+ + GL+ + +P+L IP+LG LF Sbjct: 485 DGFTMGIGGLIDSQVSNGSTKVPVLGSIPVLGRLF 519 >gi|325922269|ref|ZP_08184050.1| type IV pilus secretin PilQ/competence protein [Xanthomonas gardneri ATCC 19865] gi|325547222|gb|EGD18295.1| type IV pilus secretin PilQ/competence protein [Xanthomonas gardneri ATCC 19865] Length = 620 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/174 (21%), Positives = 84/174 (48%), Gaps = 7/174 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTT 309 F+ + L A++ ++ P + + + G + Y T+++++G +V Sbjct: 441 FALDMELSAMQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTITAASGGGQSQANVQF 500 Query: 310 HDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + + L TPT+ + R+ L + + EV+ ++ G +P R+ +T V + G Sbjct: 501 KEVLLELKVTPTITNDNRVFLNMNVKKDEVARFIVLDGYGTVPEINRREVNTAVLVGDGE 560 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ G+ + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 561 TVVIGGVYEFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 614 >gi|282896843|ref|ZP_06304849.1| pilQ(type II and III secretion system protein) [Raphidiopsis brookii D9] gi|281198252|gb|EFA73142.1| pilQ(type II and III secretion system protein) [Raphidiopsis brookii D9] Length = 522 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 43/61 (70%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T++L+G+++D + + +PLLS IP+LGALFR+++ +RE E+ + TP ++ Sbjct: 459 IRLRDGQTLLLSGIIQDQDRSVVTKVPLLSDIPLLGALFRSTKKDRERREVIVLLTPRII 518 Query: 420 K 420 + Sbjct: 519 E 519 >gi|117620160|ref|YP_855102.1| general secretion pathway protein D [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561567|gb|ABK38515.1| general secretion pathway protein D [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 677 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 31/189 (16%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--------------HLYKTVSS 300 ++ ++ AL T L+ P++ + + ASF G + ++ T+ Sbjct: 429 NWAALVTALSTNTKNDILSTPSIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIER 488 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKAD 357 T G L TP + + L I+ EVS G P++ R Sbjct: 489 KT---------VGTKLVVTPQINEGDSVLLNIEQEVSSVAQTQAPGTSTLGPTFDTRTIK 539 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 V + SG T+VL GL+ + Q+ +PLL IP+LG LFR++ + + + + Sbjct: 540 NAVLVKSGETVVLGGLMDEKTQEKVSKVPLLGDIPVLGYLFRSTSNSTSKRNLMV----- 594 Query: 418 LVKPVAMRD 426 ++P +RD Sbjct: 595 FIRPTILRD 603 >gi|206558684|ref|YP_002229444.1| putative type IV pilus secretin [Burkholderia cenocepacia J2315] gi|198034721|emb|CAR50588.1| putative type IV pilus secretin [Burkholderia cenocepacia J2315] Length = 541 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 104/247 (42%), Gaps = 30/247 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAAD-----------FGGKFVS 240 QV ++ I E + + +G + ++ PS SF AD GG + Sbjct: 274 QVRIEARIVEGEQGFSRNLGARVALRAQGRPPSAEGTSFTADARNALDLAARPLGGFDAA 333 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G L R + L ALE + ++ P + A G + Y+ Sbjct: 334 TAGFTLFAAPLSRV-LDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ-AKV 391 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G + V + L P + GR+ L + +V++ +G P+ + T V Sbjct: 392 GNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRV 449 Query: 361 ELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRN--SRFNREETEIFIAA 414 E+ +GGT+ + G L ++D+ + +PLL KIPILGALFR+ R R E +FI Sbjct: 450 EVENGGTVAIGGIYEQLNRNDVTR----VPLLGKIPILGALFRHRAQRDQRNELVVFI-- 503 Query: 415 TPFLVKP 421 TP +V P Sbjct: 504 TPTVVDP 510 >gi|168701297|ref|ZP_02733574.1| hypothetical protein GobsU_17361 [Gemmata obscuriglobus UQM 2246] Length = 1374 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 40/71 (56%) Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS+ + TTV P GGT++L GL + + + G P LSKIP L LF+N RE T Sbjct: 1286 PSFTLLDIQTTVVCPDGGTVLLGGLKRLSESRNEFGPPFLSKIPYLNRLFKNVGVGRETT 1345 Query: 409 EIFIAATPFLV 419 + I TP ++ Sbjct: 1346 HLMIMVTPRII 1356 >gi|108759429|ref|YP_633909.1| type IV pilus secretin PilQ [Myxococcus xanthus DK 1622] gi|108463309|gb|ABF88494.1| type IV pilus secretin PilQ [Myxococcus xanthus DK 1622] Length = 901 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 7/163 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLH 317 L A E +++T++ P +T + +A + G + S T A V T + + L Sbjct: 734 LSAAENEGSVKTISAPKVTTLDNNTARISQGVSIPF----SQTSAQGVNTTFVEARLSLE 789 Query: 318 FTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP + G + + I ++P A PS + ++A+T V + G T V+ G+ Sbjct: 790 VTPHITQDGSVLMSINASNNQPDPSSTGANGQPSIQRKEANTQVLVKDGDTTVIGGIYVR 849 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P LS+IP+LG LF+N+ E+ I TP ++ Sbjct: 850 RGATQVNSVPFLSRIPVLGLLFKNNSETDTRQELLIFITPRIL 892 >gi|189351753|ref|YP_001947381.1| type IV pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|189335775|dbj|BAG44845.1| type IV pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 528 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 2/137 (1%) Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 ++ + G L G T V + L P + GR+ L + +V++ +G Sbjct: 361 RAKALVEQGAELPYQAKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVG 418 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 P+ + T VE+ GGT+ + G+ + + +PLL KIP+LGALFR+ Sbjct: 419 EPTAAGPAIHTKHVQTRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRA 478 Query: 403 FNREETEIFIAATPFLV 419 + +E+ + TP +V Sbjct: 479 QREQRSELVVFITPTIV 495 >gi|323527558|ref|YP_004229711.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1001] gi|323384560|gb|ADX56651.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1001] Length = 576 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 101/240 (42%), Gaps = 19/240 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFGGKFVSEGGDFS 246 QV ++ I E + +G + S+ G++ SG D + ++ G D + Sbjct: 340 QVLIEARIVEGEHGFSRNLGVRLSMAGTAADGTTRGLSGGKDGLVYDLSARPIA-GFDAA 398 Query: 247 VKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G L F+ L ALE ++ P + A G + Y+ Sbjct: 399 TAG-LTLFAAGATRLLNVELSALEAEGRGEVVSSPRVVTADRMKAVVEQGTELPYQA-KV 456 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G + V + L P ++ GR+ L + +V++ +G P+ + T V Sbjct: 457 GQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRV 514 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 E+ GGT+ + G+ D + +P+L KIP+LGALFR+ + +E+ + TP +V+ Sbjct: 515 EVEDGGTVSIGGIYATDGRDDVTRVPVLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 574 >gi|312972414|ref|ZP_07786588.1| general secretion pathway protein D [Escherichia coli 1827-70] gi|310334791|gb|EFQ00996.1| general secretion pathway protein D [Escherichia coli 1827-70] Length = 650 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 90/230 (39%), Gaps = 44/230 (19%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTLAEPTL 277 AA + GG S D FS + +L AL LA P++ Sbjct: 389 AAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSI 448 Query: 278 TAISGQSASF-------------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ASF T+ G +++ TV T G L TP V Sbjct: 449 VTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKT---------VGTKLKVTPQVNE 499 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I+ EVS N+ P++ R V + +G T+VL GLL D ++ Sbjct: 500 GDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSK 559 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +PL IP++G LFR + R + + + ++P +RD DD Y Sbjct: 560 VPLPGDIPLVGQLFRYTSTERAKRNLMV-----FIRPTIIRD----DDVY 600 >gi|284432091|gb|ADB84853.1| PilQ [Bdellovibrio bacteriovorus] Length = 726 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/241 (22%), Positives = 108/241 (44%), Gaps = 16/241 (6%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGP---SKSFAADFGGKFVSEGGD 244 QV+++ I E + + IG S TG + GP + SF + S + Sbjct: 471 QVSIEGXIVEAKESFTRNIGVNWSATGAPIKLGSTXRGPVNMNPSFNVNQSAAGSSGALN 530 Query: 245 FSVK-GVLDRFSFETVLHAL-ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F++ G LD F + AL E ++ ++ P + +S + A + + V+ + Sbjct: 531 FNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQTTEVPVRQVTQNG 590 Query: 303 GATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADT 358 AT T + L TP V + G + +++ V++ ++ V R+A+T Sbjct: 591 TATQETFQFKPLTLKLEVTPQVTADGSVIMKVLVNRQFRGADVSSAGQGAFAVNSREANT 650 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + +G T V+ G+ + + + G+P ++P + LF+ ++E++E+ I TP + Sbjct: 651 RVLVKNGQTAVIGGIYQSEATDGEVGVPWFRQLPFVSYLFKTKNISKEKSELLILLTPRI 710 Query: 419 V 419 + Sbjct: 711 M 711 >gi|15618724|ref|NP_225010.1| general secretion protein D [Chlamydophila pneumoniae CWL029] gi|16752225|ref|NP_445593.1| general secretion pathway protein D [Chlamydophila pneumoniae AR39] gi|33242175|ref|NP_877116.1| general secretion pathway protein D precursor [Chlamydophila pneumoniae TW-183] gi|4377127|gb|AAD18953.1| General Secretion Protein D [Chlamydophila pneumoniae CWL029] gi|7189969|gb|AAF38829.1| general secretion pathway protein D [Chlamydophila pneumoniae AR39] gi|33236686|gb|AAP98773.1| general secretion pathway protein D precursor [Chlamydophila pneumoniae TW-183] Length = 754 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Query: 298 VSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 VSS YG+++ P + G+ + ++T+++ G N D P R Sbjct: 566 VSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRR 625 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 V + G T+++ GL + +GIP L IP +G LF S + TE+F+ Sbjct: 626 NITNKVRIADGETVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFI 685 Query: 415 TP-FLVKPVAMRD 426 TP L PV ++ Sbjct: 686 TPKILENPVEQQE 698 >gi|15836348|ref|NP_300872.1| general secretion protein D [Chlamydophila pneumoniae J138] gi|8979189|dbj|BAA99023.1| general secretion protein D [Chlamydophila pneumoniae J138] Length = 754 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Query: 298 VSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 VSS YG+++ P + G+ + ++T+++ G N D P R Sbjct: 566 VSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRR 625 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 V + G T+++ GL + +GIP L IP +G LF S + TE+F+ Sbjct: 626 NITNKVRIADGETVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFI 685 Query: 415 TP-FLVKPVAMRD 426 TP L PV ++ Sbjct: 686 TPKILENPVEQQE 698 >gi|15618612|ref|NP_224898.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydophila pneumoniae CWL029] gi|15836234|ref|NP_300758.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138] gi|16752338|ref|NP_444596.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39] gi|33242060|ref|NP_877001.1| outer membrane secretion protein Q [Chlamydophila pneumoniae TW-183] gi|4377005|gb|AAD18841.1| probable Yop proteins translocation protein C/general secretion pathway protein [Chlamydophila pneumoniae CWL029] gi|6672030|dbj|BAA88652.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae] gi|7188983|gb|AAF37937.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39] gi|8979074|dbj|BAA98909.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138] gi|33236570|gb|AAP98658.1| outer membrane secretion protein Q [Chlamydophila pneumoniae TW-183] Length = 919 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 15/211 (7%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313 +L AL++ + P + A Q ASF G Y+T ++ T T D G Sbjct: 699 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQETGTVTQNIDYEDIG 758 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T TV + L+I+ +SE + + P A T +++P G +V++G Sbjct: 759 VNLVVTSTVAPNNVVTLQIEQTISE-LHSASGSLTPVTDKTYAATRLQIPDGCFLVMSGH 817 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV--AMRDLSRPD 431 ++D ++ G+PLL+ IP++ LF + R++ I + P ++ R ++ Sbjct: 818 IRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTRVTNKEG 877 Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 Y+ E D + P+ A E +G Sbjct: 878 YRYNWEADEGSMQV-------APRHAPECQG 901 >gi|161523474|ref|YP_001578486.1| type IV pilus secretin PilQ [Burkholderia multivorans ATCC 17616] gi|160340903|gb|ABX13989.1| type IV pilus secretin PilQ [Burkholderia multivorans ATCC 17616] Length = 573 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 2/137 (1%) Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 ++ + G L G T V + L P + GR+ L + +V++ +G Sbjct: 406 RAKALVEQGAELPYQAKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVG 463 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 P+ + T VE+ GGT+ + G+ + + +PLL KIP+LGALFR+ Sbjct: 464 EPTAAGPAIHTKHVQTRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRA 523 Query: 403 FNREETEIFIAATPFLV 419 + +E+ + TP +V Sbjct: 524 QREQRSELVVFITPTIV 540 >gi|330889718|gb|EGH22379.1| general secretion pathway protein D [Pseudomonas syringae pv. mori str. 301020] Length = 680 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALE + L+ P+L ++ Q A G + S++T +SV Sbjct: 476 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 535 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS D P R T V SG Sbjct: 536 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSG 595 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ Sbjct: 596 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI 649 >gi|269103980|ref|ZP_06156677.1| type IV pilus biogenesis protein PilQ [Photobacterium damselae subsp. damselae CIP 102761] gi|268163878|gb|EEZ42374.1| type IV pilus biogenesis protein PilQ [Photobacterium damselae subsp. damselae CIP 102761] Length = 583 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 5/163 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ + ++ P L + ++A G + Y +SS GA SV + L T Sbjct: 421 LSALQAESKAEIISSPRLVTTNKKAAYIEQGTEIPYLEAASS-GAVSVDFKKAVLSLMVT 479 Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + ++ L + Q +V E V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 480 PQITPDDKLVLDLLVTQDKVGETVV-TGTGEAVAIDTQRIGTQVLVNNGETVVLGGIYQH 538 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL IP LG LFR+ + E+ I TP ++ Sbjct: 539 QVNNSVRKVPLLGDIPGLGVLFRHKLQEMGKRELLIFVTPKII 581 >gi|188532939|ref|YP_001906736.1| General secretion pathway protein D [Erwinia tasmaniensis Et1/99] gi|188027981|emb|CAO95838.1| General secretion pathway protein D [Erwinia tasmaniensis Et1/99] Length = 646 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 5/179 (2%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 ++ + +AL+ + LA P++ + A FT G T S +T SV Sbjct: 414 NWAGLFNALQTNSLNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGVFNSVDRK 473 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIV 369 G+ L P + + + I+ EVS + + ++ R V + SG T+V Sbjct: 474 SVGIKLKVKPQINEGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNAVLVQSGKTVV 533 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 + GLL ++ +PLL KIP +G LFR + + + + + P +++ DL+ Sbjct: 534 VGGLLDTTHSNVESSVPLLGKIPFIGGLFRYTSDKKSKRNLMLFIRPTIIRQQDSFDLT 592 >gi|262191511|ref|ZP_06049695.1| type II secretory pathway component PulD [Vibrio cholerae CT 5369-93] gi|262032609|gb|EEY51163.1| type II secretory pathway component PulD [Vibrio cholerae CT 5369-93] Length = 559 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 65/261 (24%), Positives = 106/261 (40%), Gaps = 38/261 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSE-------- 241 QV L+ I EV Q G S SS+G S + D G ++ Sbjct: 277 QVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPGLDAI 336 Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 GG +V V+ SF+ V+ + + L+ P +TA + Q A G Y T Sbjct: 337 GNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVT 394 Query: 298 -VSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------V 340 +SS G+ +T G+ L TP + G + L + V E + Sbjct: 395 DISSVVGSGDNAQASPSIKITPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKIL 454 Query: 341 IGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 ++P + +R++D+ + G +V+ GL+K + +P L +P LG LF Sbjct: 455 YRSEEIELPLAKSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLF 514 Query: 399 RNSRFNREETEIFIAATPFLV 419 RN+ ++TE+ I P +V Sbjct: 515 RNTTKLTQKTELVILLKPTVV 535 >gi|269302489|gb|ACZ32589.1| type II/III secretion system protein [Chlamydophila pneumoniae LPCoLN] Length = 919 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 15/211 (7%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313 +L AL++ + P + A Q ASF G Y+T ++ T T D G Sbjct: 699 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQETGTVTQNIDYEDIG 758 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T TV + L+I+ +SE + + P A T +++P G +V++G Sbjct: 759 VNLVVTSTVAPNNVVTLQIEQTISE-LHSASGSLTPVTDKTYAATRLQIPDGCFLVMSGH 817 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV--AMRDLSRPD 431 ++D ++ G+PLL+ IP++ LF + R++ I + P ++ R ++ Sbjct: 818 IRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTRVTNKEG 877 Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 Y+ E D + P+ A E +G Sbjct: 878 YRYNWEADEGSMQV-------APRHAPECQG 901 >gi|325123720|gb|ADY83243.1| type IV pilus assembly protein PilQ [Acinetobacter calcoaceticus PHEA-2] Length = 721 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 11/179 (6%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTT-HD 311 F + L AL+ ++ P + Q A +G Q Y+T + S+ GAT+ T+ D Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKD 606 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367 + L TP++ G+I +++ ++S+ + +G P+ + T V + +G T Sbjct: 607 ALLSLDVTPSITPDGKIQMKL--DISKDSV---SGAAPNGELILNKNNIKTNVLVNNGET 661 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++L G+ + + +P +P +G LFR + + ++ E+ I TP +V +R+ Sbjct: 662 VILGGVFEQTTLNSQTKVPFFGDLPGIGRLFRKDQKSDDKQELLIFVTPRIVNDTLVRN 720 >gi|149194260|ref|ZP_01871357.1| putative type II protein secretion system D protein [Caminibacter mediatlanticus TB-2] gi|149135435|gb|EDM23914.1| putative type II protein secretion system D protein [Caminibacter mediatlanticus TB-2] Length = 450 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 17/191 (8%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----TVSSSTG----AT 305 F+ L+ L + + +++ P + ++ Q A + G YK V+ G Sbjct: 254 FNSAAFLNFLAQNGNVNSISNPKIMTLNNQKAIISVGDTIYYKYASKVVTDQNGNPQTQY 313 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDMP-SYRVRKADTT 359 ++ GV+L TP + G I L I +S + DMP + + Sbjct: 314 TIGNKFVGVILDITPQISDDGTIILSIAPRISAFRDLNQLSTQTVRDMPPDTKDNTMLSV 373 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V++ TIVL GL+ DD G+P+L +IPI+ LF + + E+ TP ++ Sbjct: 374 VKVKDNDTIVLGGLISDDKSLKVNGVPILKEIPIVKYLFSSKERITNKKELVFVITPHII 433 Query: 420 ---KPVAMRDL 427 K +RDL Sbjct: 434 NLKKKKTLRDL 444 >gi|221213453|ref|ZP_03586428.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD1] gi|221166905|gb|EED99376.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD1] Length = 571 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 2/137 (1%) Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 ++ + G L G T V + L P + GR+ L + +V++ +G Sbjct: 404 RAKALVEQGAELPYQAKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVG 461 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 P+ + T VE+ GGT+ + G+ + + +PLL KIP+LGALFR+ Sbjct: 462 EPTAAGPAIHTKHVQTRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRA 521 Query: 403 FNREETEIFIAATPFLV 419 + +E+ + TP +V Sbjct: 522 QREQRSELVVFITPTIV 538 >gi|37523454|ref|NP_926831.1| hypothetical protein gll3885 [Gloeobacter violaceus PCC 7421] gi|35214458|dbj|BAC91826.1| gll3885 [Gloeobacter violaceus PCC 7421] Length = 299 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 20/171 (11%) Query: 268 AIRTLAEPTLTAISGQSASFTSGGQ-HLYKT-VSSSTGATSVTTHDYGVVLHFTPTVL-S 324 A++TL + L G++A+ + Q + +T VS+ T +S + L+ TP VL S Sbjct: 107 ALQTLIDQQLVVSDGETATISQNVQFRIPQTIVSNGTALSSTQAINARTTLNLTPMVLPS 166 Query: 325 PGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 ++ + ++ + S+P VI N+ D+P+ R L SGG +L G+ + D Sbjct: 167 KKQVAISVRGDFSDPQGSGEGLVINTNSIDIPNLR---------LDSGGVALLGGITRHD 217 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDL 427 ++ +P+LS IPILG LF++S ++ + + P + +P+A +L Sbjct: 218 EANIEYRVPVLSAIPILGDLFKSSNRVVKDQRLLVMIEPVIQEQPLAGAEL 268 >gi|298369928|ref|ZP_06981244.1| type IV pilus secretin PilQ [Neisseria sp. oral taxon 014 str. F0314] gi|298281388|gb|EFI22877.1| type IV pilus secretin PilQ [Neisseria sp. oral taxon 014 str. F0314] Length = 715 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 2/165 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E +TL+ P + + A SG + Y+ +SS GATSVT + L T Sbjct: 547 LSASEELGKSKTLSNPRVLTQDRKEAIIESGTEIPYQEATSS-GATSVTFKKAVLGLTVT 605 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G+I + ++ P+ G + +T + GGT+++ G+ +++ Sbjct: 606 PNITPDGQIIMTVKINKDSPIDCQTDGLRTKCISTKNLNTQAMVEDGGTLIVGGIYEEEN 665 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +PLL IP++G LF++ + E+ I TP ++ V Sbjct: 666 SNAVNKVPLLGDIPVVGNLFKSRGRSERRRELLIFITPRIMDGVG 710 >gi|293610712|ref|ZP_06693012.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827056|gb|EFF85421.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 721 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 11/179 (6%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTT-HD 311 F + L AL+ ++ P + Q A +G Q Y+T + S+ GAT+ T+ D Sbjct: 547 FMLDLELSALQADGYGEVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKD 606 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV----RKADTTVELPSGGT 367 + L TP++ G+I +++ ++S+ + +G P+ + T V + +G T Sbjct: 607 ALLSLDVTPSITPDGKIQMKL--DISKDSV---SGAAPNGELILNKNNIKTNVLVNNGET 661 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++L G+ + + +P +P +G LFR + + ++ E+ I TP +V +R+ Sbjct: 662 VILGGVFEQTTLNSQTKVPFFGDLPGIGRLFRKDQKSDDKQELLIFVTPRIVNDTLVRN 720 >gi|238793311|ref|ZP_04636937.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia intermedia ATCC 29909] gi|238727280|gb|EEQ18808.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia intermedia ATCC 29909] Length = 486 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 12/212 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ + VTI +V + Q+G S + S G SF ++ G S G +V G D Sbjct: 260 QIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSNSGKN--SADGFSTVIG--DTG 315 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +F L+AL++ + R L+ P++ ++ A K T G Sbjct: 316 NFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKLQGDKVAKLESITS--GS 373 Query: 315 VLHFTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 +L TP ++ + L IQ + I ++ +P + T L G +++ Sbjct: 374 LLRVTPRMIDADGVKEVLLNLNIQDGQQQAAIS-SSEPLPEIQNSDISTQATLRVGQSLL 432 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 L G ++D + + IPLL IP+LG LFR++ Sbjct: 433 LGGFIQDKQIESQNKIPLLGDIPLLGGLFRST 464 >gi|16124428|ref|NP_418992.1| general secretion pathway protein D [Caulobacter crescentus CB15] gi|221233111|ref|YP_002515547.1| type II secretion pathway protein D [Caulobacter crescentus NA1000] gi|13421292|gb|AAK22160.1| general secretion pathway protein D [Caulobacter crescentus CB15] gi|220962283|gb|ACL93639.1| type II secretion pathway protein D [Caulobacter crescentus NA1000] Length = 687 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 9/187 (4%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F +++A+++ T L+ P++ + + A G Q + T G + ++ Sbjct: 460 FGAIINAVKKDTGSNLLSTPSIMTLDNEEARILVG-QEVPITTGEVLGDSNANPFRTIQR 518 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTI 368 + G+ L P + + G I L ++ EVS V+ G R+ +TT + G + Sbjct: 519 QNVGIQLEVKPQINAGGGITLFLRQEVSSVAGPVSVGSSELIINKREIETTALVDDGDIV 578 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDL 427 VL GLL Q + P L +P LGALFR++ R++T + + P +++ A R+L Sbjct: 579 VLGGLLDQQETQSAQRTPGLGDVPGLGALFRSTARERKKTNLMVFIRPRIIRSSADARNL 638 Query: 428 SRPDDHY 434 + P Y Sbjct: 639 TAPRYDY 645 >gi|257485358|ref|ZP_05639399.1| general secretion pathway protein GspD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 341 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALE + L+ P+L ++ Q A G + S++T +SV Sbjct: 137 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 196 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS D P R T V SG Sbjct: 197 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSG 256 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ Sbjct: 257 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI 310 >gi|221201610|ref|ZP_03574648.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2M] gi|221207315|ref|ZP_03580325.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2] gi|221172903|gb|EEE05340.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2] gi|221178426|gb|EEE10835.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2M] Length = 571 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 2/129 (1%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G T V + L P + GR+ L + +V++ +G P+ Sbjct: 412 GAELPYQAKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPA 469 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T VE+ GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ Sbjct: 470 IHTKHVQTRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSEL 529 Query: 411 FIAATPFLV 419 + TP +V Sbjct: 530 VVFITPTIV 538 >gi|254254052|ref|ZP_04947369.1| Type II secretory pathway component HofQ [Burkholderia dolosa AUO158] gi|124898697|gb|EAY70540.1| Type II secretory pathway component HofQ [Burkholderia dolosa AUO158] Length = 735 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 35/248 (14%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGGKFVSEGGDFSVKGVL 251 + +VTL V + EV + +G Q+ P K F+A G ++GG ++ +L Sbjct: 350 QSEVTLDVQVLEVNMNDSLDLGVQY--------PGKLQFSALAG----ADGGALTLGDLL 397 Query: 252 ----DRF-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 DR + + L++ RTLA P + + + AS G + T ++ Sbjct: 398 RLNRDRIGVSSESGALSMAIDLLQKQGKTRTLANPKIRVRNMEKASIKIGERVPIVTTTN 457 Query: 301 STG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYR 352 + G SV+ D G++L P + + +++ EVS + G+ A S Sbjct: 458 ANGVVTESVSYQDVGLMLKVEPRISLDDEVSVKVNMEVSSILSKETTKTGLVAY---SLG 514 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A+T + +G T +LAGL+K + G+P +S +PI+G LF + + + +EI + Sbjct: 515 TRNAETLMTARNGQTQILAGLVKRNETDNASGLPGVSGLPIVGRLFGSHGRSHDRSEIVL 574 Query: 413 AATPFLVK 420 TP + + Sbjct: 575 LITPHIER 582 >gi|71280237|ref|YP_271224.1| MSHA biogenesis protein MshL [Colwellia psychrerythraea 34H] gi|71145977|gb|AAZ26450.1| MSHA biogenesis protein MshL [Colwellia psychrerythraea 34H] Length = 609 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 19/183 (10%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----------VSSSTGAT 305 F V+ L+ ++ L+ P +TA + Q A G + T +++T Sbjct: 360 FSGVIELLQTQGNVQVLSSPRITATNNQKAVIKVGEDEYFVTEVSSTTTTGTSTTTTPEV 419 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGD------MPSYRVRKA 356 +T G+ L TP + G + L + V+ E + GD + VR++ Sbjct: 420 ELTPFFSGIALDVTPQISKDGSVILHVHPSVTITEEQSKTIKIGDTTLVLPLAQSSVRES 479 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT + SG +V+ GL++ ++ P+L IP LG LF+N ++ E+ I P Sbjct: 480 DTIIRANSGEVVVIGGLIETYNIDIESKTPILGDIPYLGELFKNKSQKSQKRELVIMLKP 539 Query: 417 FLV 419 +V Sbjct: 540 IVV 542 >gi|262277342|ref|ZP_06055135.1| putative outer membrane protein [alpha proteobacterium HIMB114] gi|262224445|gb|EEY74904.1| putative outer membrane protein [alpha proteobacterium HIMB114] Length = 544 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 5/180 (2%) Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 +GG + G + R + A T T++ P + AI GQ A+ + G Q + +S Sbjct: 369 QGGTLII-GSIGRALLSATIAASVSDTNSETISNPKIFAIDGQQATISQGTQQVRSVPAS 427 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR-VRKADTT 359 A T D+ + TPT++ +R+Q ++ +G D + + +T Sbjct: 428 GGDAGGFETLDFTLNFGVTPTIVGDK---VRLQISLANDSLGQGGTDANTPKNTENVTST 484 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V L +G +L G+ K+ Q +PLL +IP+LG F+ + ++++ I T +V Sbjct: 485 VVLNNGDVAILGGVYKNTKQDDIIFVPLLHRIPVLGEFFKKKTKSDTKSQLLIFVTANIV 544 >gi|251773365|gb|EES53914.1| putative type II secretion system protein D [Leptospirillum ferrodiazotrophum] Length = 604 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 75/325 (23%), Positives = 126/325 (38%), Gaps = 61/325 (18%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 LE+TLR+ I + + + S TV + G VR + +QR +++ R+Q Sbjct: 266 LEITLRKTIPHAVVSADPKSQTVSVRGTVRDVYLAQRYLDIV--------RDQL------ 311 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG----------FQHSITGSSSGPSKSFAA 232 +V ++T+AE+ G F +++ +S G S + + Sbjct: 312 ----------RREVFFRITVAEIDLSDANAYGINWSAMAKGVFNSTLSLTSGGTSNAGLS 361 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-- 290 GG G F V+ AL+ + L +P + +SGQ S + Sbjct: 362 ATGGVATPYGATFGQTAVI---------QALDTIGRVHVLNQPYVGTVSGQPVSLNATTN 412 Query: 291 -----GQHLYKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLR-------IQTE 335 G++ + S+ ++ Y GV L TPT L +I L +Q Sbjct: 413 IPYLQGEYPFFAGGLSSATETLPQIAYAAVGVNLEVTPT-LEGDQIHLHGTVVVNTLQQM 471 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V+ + + P R T + G TIV+ GL+ + + IP L IP L Sbjct: 472 VTINIKNIGEFQNPQINTRSETTEITAHDGQTIVIGGLMANTKNKQFWTIPFLGSIPGLK 531 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 LF + ++ TE+ I TP + K Sbjct: 532 WLFSGYNYQKQVTELAILITPEIKK 556 >gi|206891200|ref|YP_002248265.1| PilQ [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743138|gb|ACI22195.1| PilQ [Thermodesulfovibrio yellowstonii DSM 11347] Length = 663 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + AL+++ + ++ P + + Q A G Y +G S D + + T Sbjct: 499 ISALQQSGKGKVISNPKVITLDNQKAKIVQGASIPYGEKDVQSGQISTKFKDVAITVEAT 558 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDD 377 P ++ + L + + V VN G + + R K +T V L G T+V+ G+ K Sbjct: 559 PHLIDDKSMLLDVSVIKEDLVEFVNIGGVYAPRTTKIEGNTKVSLKDGETLVIGGIYKKT 618 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREET--EIFIAATPFLVK 420 + +P L +P+LG LF++ R+ET E+ I TP ++K Sbjct: 619 DSLTESKVPGLGDVPLLGELFKSR--GRDETLYEVMIFVTPRILK 661 >gi|3978519|gb|AAD04923.1| PilQ [Myxococcus xanthus DK 1622] Length = 901 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 7/163 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLH 317 L A E +++T++ P +T + +A G + S T A V T + + L Sbjct: 734 LSAAENEGSVKTISAPKVTTLDNNTARINQGVSIPF----SQTSAQGVNTTFVEARLSLE 789 Query: 318 FTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP + G + + I ++P A PS + ++A+T V + G T V+ G+ Sbjct: 790 VTPHITQDGSVLMSINASNNQPDPSSTGANGQPSIQRKEANTQVLVKDGDTTVIGGIYVR 849 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P LS+IP+LG LF+N+ E+ I TP ++ Sbjct: 850 RGATQVNSVPFLSRIPVLGLLFKNNSETDTRQELLIFITPRIL 892 >gi|217076176|ref|YP_002333892.1| bacterial type II and III secretion system protein [Thermosipho africanus TCF52B] gi|217036029|gb|ACJ74551.1| bacterial type II and III secretion system protein [Thermosipho africanus TCF52B] Length = 1318 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 29/213 (13%) Query: 236 GKFVSEGG-----DFSVKGVLDRFSFETVLHAL--------------------ERATAIR 270 GK S+ G DF+VK L S E +++ L Sbjct: 1107 GKITSDLGTLSNDDFNVKLSLSNLSIEGIINKLLSIGSDGNSSLNIEIGNGNNVTNKNTN 1166 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LA P + A SG++AS G + + +S++ + + GV L TP + + I L Sbjct: 1167 VLASPNVVAKSGETASILIGDK-IPIVLSTAENTQEIKYIESGVTLEITPYINADNTIDL 1225 Query: 331 RIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + +VS + + +P R R+ + + L T+V+ GL +++ + IP+ Sbjct: 1226 ELNIKVSSFDWDLKSQYSLSLPVERTREFSSKILLKENQTLVIGGLSREENSKTVSKIPI 1285 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L +PI+G F + + ++ + I I + +VK Sbjct: 1286 LGDLPIIGKFFVSEKSDKVKRNIVIFISAKVVK 1318 >gi|323173796|gb|EFZ59425.1| general secretion pathway protein D [Escherichia coli LT-68] Length = 613 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 9/152 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 L GL+ D + +PLL IP++G LF+++ Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKST 607 >gi|167003376|ref|ZP_02269162.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei PRL-20] gi|243061081|gb|EES43267.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei PRL-20] Length = 599 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 438 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 494 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 495 LPMVVDEGGCTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 550 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E F TP +++P Sbjct: 551 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERFFLVTPRVIEP 599 >gi|110835094|ref|YP_693953.1| fimbrial assembly protein pilQ [Alcanivorax borkumensis SK2] gi|110648205|emb|CAL17681.1| Fimbrial assembly protein pilQ precursor [Alcanivorax borkumensis SK2] Length = 723 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 E L ALE +A P + Q A SG Q ++ +++S+GATS+ + + Sbjct: 558 IELELSALEAEGHGELVATPKVLTADQQPAVIASGQQVPFE-IATSSGATSIDFVEAELR 616 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + G I + ++ ++ + + +T+V + G T+VL G+ + Sbjct: 617 LEVTPHITPDGNIIMMLKVNNDS----FSSDGSAAINTNRVETSVLVNDGETVVLGGIFQ 672 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFLVK 420 + P L +P +GALFR + R N++E IFI TP L+K Sbjct: 673 QEKINSVTKTPFLGDLPWIGALFRKTVNRDNKQELLIFI--TPRLMK 717 >gi|312972778|ref|ZP_07786951.1| general secretion pathway protein D [Escherichia coli 1827-70] gi|310332720|gb|EFP99933.1| general secretion pathway protein D [Escherichia coli 1827-70] Length = 613 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 9/152 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + ++ A++ ++ L+ P++T + Q A F G Q + S+ G+ +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG-QDVPVLTGSTVGSNNSNPFNTVER 517 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L TP + + + I+ EVS+ V G + D+ + RK TTV G IV Sbjct: 518 KKVGIMLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIV 575 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 L GL+ D + +PLL IP++G LF+++ Sbjct: 576 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKST 607 >gi|261854769|ref|YP_003262052.1| general secretion pathway protein D [Halothiobacillus neapolitanus c2] gi|261835238|gb|ACX95005.1| general secretion pathway protein D [Halothiobacillus neapolitanus c2] Length = 725 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 22/194 (11%) Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL- 294 G++ G DF++ ++ AL + L+ P+L + Q AS G Q++ Sbjct: 464 GRYGQGGADFAL-----------LVSALAGNSGNNILSTPSLLTLDNQEASIVVG-QNIP 511 Query: 295 -----YKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Y S+T T ++T D GV L TPT+ G + L+I+ EVS + Sbjct: 512 IVTGSYAQTGSATSPTNPFQTITREDIGVKLKVTPTISPDGTVRLKIEQEVSSLDSAAQS 571 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 R TTV++ G +VL GL+ D ++ +P L IPILG LFR + Sbjct: 572 SAGLITNKRNVTTTVQVDDGDVVVLGGLIDDSTNSNQQSVPGLGDIPILGNLFRYRSAST 631 Query: 406 EETEIFIAATPFLV 419 + + I P +V Sbjct: 632 NKRNLMIFIRPLIV 645 >gi|254448224|ref|ZP_05061686.1| Bacterial type II and III secretion system protein [gamma proteobacterium HTCC5015] gi|198262091|gb|EDY86374.1| Bacterial type II and III secretion system protein [gamma proteobacterium HTCC5015] Length = 629 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 11/152 (7%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LA PTL A +GQ++ F SG + VS G + + GV L TP G I L+ Sbjct: 395 LARPTLVARAGQTSEFFSGVEVSAAAVSGGAGDSISVEKEIGVKLAVTPEFGPDGSIILQ 454 Query: 332 IQTE---VSEPVIGVNAGDMPSYRVRKADTTVE----LPSGGTIVLAGLLKDDIQQLKEG 384 ++ E ++ P V + +R+ TTV + G T++L GL + + + +G Sbjct: 455 VEAERTFLTTPSSSV----LFEFRLDTTKTTVNANVAMNYGQTLILGGLNERETENDSDG 510 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +P+L IP++ F + + I TP Sbjct: 511 VPILRDIPLINLFFSRKTQRDFKKSVMILLTP 542 >gi|297181980|gb|ADI18156.1| type II secretory pathway, component puld [uncultured Verrucomicrobiales bacterium HF0200_39L05] Length = 800 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 26/203 (12%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G FS D S E + AL +++ + L P + A+F +G Q Y+ S Sbjct: 527 GGFSYISRYDN-SLEFAMSALANSSSAKVLQTPRVQTSHAVPATFFNGEQVPYQGSSGYG 585 Query: 303 GATSVTTH----------------DYGVVLHFTPTVLSPGRIGLRIQTEVSE-------- 338 G + G+ L TP + + + IQ +SE Sbjct: 586 GYGGGYGGYGGYGGYGGGGYTQFLNVGITLDVTPYITPDDLVVMEIQQTISELDGFIDMG 645 Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G + P R+A +TV + G TI+L G +++ + G+P L IP+LG L Sbjct: 646 GGQQGSSGMKAPQTTEREAASTVSVRDGDTILLGGFIRNSKTGTESGVPFLKDIPLLGNL 705 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F+N + +E+ + P ++K Sbjct: 706 FKNESNTNKRSELLVLIRPTILK 728 >gi|322418671|ref|YP_004197894.1| type II and III secretion system protein [Geobacter sp. M18] gi|320125058|gb|ADW12618.1| type II and III secretion system protein [Geobacter sp. M18] Length = 862 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 18/185 (9%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGR 327 TL+ P + + + A F G + T SS++ TSV D GV ++ PT+ Sbjct: 424 ETLSNPKIRVKNREKAKFNVGTRVPITTTSSTSTGTSVNVQYVDVGVKVNAEPTIQLNNE 483 Query: 328 IGLRIQTEVS-----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + +++ EVS E V A + + R DT + L G T ++ GL++ K Sbjct: 484 VVIKLGLEVSSILGREKVGTDQATTVVTIGTRNLDTVLSLKDGETSIIGGLMQKSETDSK 543 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + + LL IP+LG LF N+ + +++E+ +A TP +V+ V + E+D A Sbjct: 544 KKVFLLGDIPVLGNLFSNTGKSNDKSELLLAITPRIVRGVTVP-----------ENDVAA 592 Query: 443 FFFNR 447 F+ R Sbjct: 593 FWSGR 597 >gi|313291988|gb|ADR51186.1| general secretion pathway protein D [Aeromonas veronii] Length = 679 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 52/267 (19%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--------AADFGGKFVSEGGDFS 246 QV ++ I E++ +G Q G+++G F +A GK G + Sbjct: 350 QVLVEAIIVEMQDGDGLSLGVQW---GNANGGGTQFTNSGLPLGSAIAAGKDYQNGKTDT 406 Query: 247 VKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---- 292 G+L F+ + + AL T L+ P++ + + ASF G + Sbjct: 407 AAGLLKEFNGMAAGFYHGDWAMLATALASNTKNDILSTPSIVTMDNKEASFNVGQEVPVQ 466 Query: 293 ----------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 ++ T+ T G L TP + + L I+ EVS Sbjct: 467 SGSQSSTTSDQVFNTIERKT---------VGTKLVVTPQINEGDSVLLNIEQEVSSVAQT 517 Query: 343 VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 G P++ R V + SG T+VL GL+ + ++ +PLL IP+LG LFR Sbjct: 518 QATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQVSKVPLLGDIPVLGYLFR 577 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRD 426 ++ + + + ++P +RD Sbjct: 578 STSNTTSKRNLMV-----FIRPTILRD 599 >gi|289648905|ref|ZP_06480248.1| general secretion pathway protein D [Pseudomonas syringae pv. aesculi str. 2250] gi|330987884|gb|EGH85987.1| general secretion pathway protein D [Pseudomonas syringae pv. lachrymans str. M301315] Length = 775 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALE + L+ P+L ++ Q A G + S++T +SV Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 630 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS D P R T V SG Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSG 690 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ Sbjct: 691 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI 744 >gi|262373636|ref|ZP_06066914.1| general secretion pathway protein D [Acinetobacter junii SH205] gi|262311389|gb|EEY92475.1| general secretion pathway protein D [Acinetobacter junii SH205] Length = 709 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 5/179 (2%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L F + L A++ ++ P + Q+A SG Q Y + S+ GA +V Sbjct: 532 LSDFMLDLELSAVQADGYGEVVSTPKVLTADKQAAKIESGTQIPYSS-STGGGANAVPKT 590 Query: 311 ---DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D + L TP++ G++ +++ P G + + DT V + +G T Sbjct: 591 EFIDATLSLDVTPSITPEGKVMMKLNITKDSPGTPTPTGQL-TINKNTIDTNVVVDNGET 649 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +VL G+ + + + +P L +P +G LFR + E+ I TP +V R+ Sbjct: 650 VVLGGIFEQENINSQTKVPFLGDLPYVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRN 708 >gi|330443957|ref|YP_004376943.1| type II and III secretion system protein [Chlamydophila pecorum E58] gi|328807067|gb|AEB41240.1| Bacterial type II and III secretion system protein [Chlamydophila pecorum E58] Length = 751 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 VS+ YG+++ P + G+ + ++T+++ G N D P Sbjct: 562 AVSAENDKALYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNMDDRPEVTR 621 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V + G ++++ GL + +EGIP L +IP LG LF + + TE+F+ Sbjct: 622 RNITNKVRIADGESVIIGGLRCKHMSDSQEGIPFLGEIPGLGKLFSMNAVSDSLTEMFVF 681 Query: 414 ATP 416 TP Sbjct: 682 ITP 684 >gi|330830590|ref|YP_004393542.1| general secretion pathway protein D [Aeromonas veronii B565] gi|328805726|gb|AEB50925.1| General secretion pathway protein D [Aeromonas veronii B565] Length = 679 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 52/267 (19%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--------AADFGGKFVSEGGDFS 246 QV ++ I E++ +G Q G+++G F +A GK G + Sbjct: 350 QVLVEAIIVEMQDGDGLSLGVQW---GNANGGGTQFTNSGLPLGSAIAAGKDYQNGKTDT 406 Query: 247 VKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---- 292 G+L F+ + + AL T L+ P++ + + ASF G + Sbjct: 407 AAGLLKEFNGMAAGFYHGDWAMLATALASNTKNDILSTPSIVTMDNKEASFNVGQEVPVQ 466 Query: 293 ----------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 ++ T+ T G L TP + + L I+ EVS Sbjct: 467 SGSQSSTTSDQVFNTIERKT---------VGTKLVVTPQINEGDSVLLNIEQEVSSVAQT 517 Query: 343 VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 G P++ R V + SG T+VL GL+ + ++ +PLL IP+LG LFR Sbjct: 518 QATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQVSKVPLLGDIPVLGYLFR 577 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRD 426 ++ + + + ++P +RD Sbjct: 578 STSNTTSKRNLMV-----FIRPTILRD 599 >gi|255595192|ref|XP_002536247.1| conserved hypothetical protein [Ricinus communis] gi|223520311|gb|EEF26137.1| conserved hypothetical protein [Ricinus communis] Length = 316 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 5/83 (6%) Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R A+TT++L + T +LAGL +DD Q+ + +P L +P++G LF ++ ++ + EI + Sbjct: 34 RNANTTLQLRNNETQILAGLFRDDEQKTRRKVPGLGNLPLIGKLFSSNNEDKRKNEIVL- 92 Query: 414 ATPFLVKPVAMRDLSRPDDHYSV 436 L+ P M +LS YS+ Sbjct: 93 ----LITPRIMHNLSPASSVYSL 111 >gi|225163988|ref|ZP_03726276.1| type II and III secretion system protein [Opitutaceae bacterium TAV2] gi|224801402|gb|EEG19710.1| type II and III secretion system protein [Opitutaceae bacterium TAV2] Length = 928 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 46/240 (19%) Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S P+ AD G G S+ GV+ F + A+ + L+ P +T +SG Sbjct: 657 SPPATPGTADTGSAV---GNIASITGVMGNFDVAAQIRAIAQKQGSDLLSAPKVTVLSGN 713 Query: 284 SASFTSGGQHL-----YKTVSSSTGATSVT------------------THDYGVVLHFTP 320 A F Q L Y S G +S T + GV L TP Sbjct: 714 PA-FMVVAQELRYPQSYGETESEVGTSSGNGGGAAGVTITPGTPEEFVTRNVGVELRVTP 772 Query: 321 TVLSPG-RIGLRIQTEVSE------------PVIGVNAGDMPS------YRVRKADTTVE 361 TV I L + +V+E + G +PS + R+ T V Sbjct: 773 TVEDDNYSITLDLNPKVTEFEGFIEYGGSSVAISGNTTVTLPSGYYQPIFSTREVTTKVT 832 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G T+V+ GL +++++++ + +P+L IP LG LF++ + ++ + + T LV P Sbjct: 833 VWDGATLVMGGLTREEVKRVNDKVPILGDIPFLGRLFKSKGESSQKRNLLVFVTANLVSP 892 >gi|121607022|ref|YP_994829.1| type IV pilus secretin PilQ [Verminephrobacter eiseniae EF01-2] gi|121551662|gb|ABM55811.1| type IV pilus secretin PilQ [Verminephrobacter eiseniae EF01-2] Length = 712 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 14/217 (6%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------FETV-LHA 262 G +S +SG + S A D GG FV+ S + F+ F T+ L A Sbjct: 492 GTSYSDAVKASGANGSTAPDTGGNFVNLPASLSSVNTVGSFALSIFNAATNKFLTLELSA 551 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 +E R ++ P + A G ++ Y V++ GAT++ + L +P + Sbjct: 552 MEADGKGRIVSSPRIITADQTKALIEQGTEYPY-AVTAPNGATTLAFKKAVLKLEVSPQI 610 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G I L + +VS+ G + + T + + +GGT+V+ G+ + + + Sbjct: 611 TPEGNIILDL--DVSKDSRGETTSQGVAIDTKHIKTQILIENGGTVVIGGIFEMEETSQE 668 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP L +P++G LF++ + E+ I TP ++ Sbjct: 669 NKIPFLGDVPVVGNLFKSKTKETTKREMLIFITPKVI 705 >gi|37520489|ref|NP_923866.1| hypothetical protein gll0920 [Gloeobacter violaceus PCC 7421] gi|35211483|dbj|BAC88861.1| gll0920 [Gloeobacter violaceus PCC 7421] Length = 632 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 15/234 (6%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV +V I E+ +++ +I +GS+ P + GG F S F+ + R Sbjct: 383 QVVFEVKIVELSDAGSRELNALRTIQSGSAVSPGNTAPLSLGGLF-SPPTSFATFNDIAR 441 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG------QHLYKTVSSSTGATSV 307 V++ L R + + L I+GQ AS L ++ T++ Sbjct: 442 AIV--VINGLITENKARVVTDTKLNTITGQKASIDVQTDINLILNQLTNVSGATVNNTTL 499 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVEL 362 +T G V+ TPTV + G + + E S P P+ RK + + Sbjct: 500 STLRAGTVVELTPTVQADGNVLAELSVESSVPQGTTTLTSSGTTVPPNIARRKVKNIILV 559 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 G T+ + GL++ +++ +P IP++G LF N+ + E++E+ + TP Sbjct: 560 KDGQTLEIGGLIQTTNREVITRVPFFGYIPLIGQLFSNTNVSLEQSELVVFITP 613 >gi|206577210|ref|YP_002240367.1| pullulanase secretion envelope protein PulD [Klebsiella pneumoniae 342] gi|206566268|gb|ACI08044.1| pullulanase secretion envelope protein PulD [Klebsiella pneumoniae 342] Length = 648 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 16/212 (7%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 ++ +L AL +T LA P++ + A+F G + T S +T +V Sbjct: 411 NWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGSQTTSGDNIFNTVERK 470 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGT 367 G+ L P + + L I+ EVS ++ ++ R + V + SG T Sbjct: 471 TVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFNTRTVNNAVLVGSGET 530 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +V+ GLL + + +PLL IP++GALFR+ E ++ ++P +RD Sbjct: 531 VVVGGLLDKSVTDTADKVPLLGDIPVIGALFRS-----ESKKVSKRNLMLFIRPTIIRD- 584 Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 D Y + F+ K++SE Sbjct: 585 ---RDEYRQASSGQYTAFDNAQTKQRGKDSSE 613 >gi|156973989|ref|YP_001444896.1| hypothetical protein VIBHAR_01700 [Vibrio harveyi ATCC BAA-1116] gi|156525583|gb|ABU70669.1| hypothetical protein VIBHAR_01700 [Vibrio harveyi ATCC BAA-1116] Length = 623 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 13/217 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + ++ + ++I ++ + L Q+G G++S D G V+ G + K Sbjct: 291 QSRIEVALSIVDISANDLSQLGVDWRAGIEVGNNSILDIKTTGDVDGGDVTLGSGQTFKS 350 Query: 250 VLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 +LD + +L LE + + ++ PTL A + K + T A Sbjct: 351 LLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYIKLIGRETAALE 410 Query: 307 VTTHDYGVVLHFTPTVLSP-----GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 T YG +L P ++ I L + E + D+PS R + T Sbjct: 411 EVT--YGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSIRKTEISTLAT 468 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G ++++ G+ +D++ +PLL IP LGALF Sbjct: 469 VKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALF 505 >gi|269963152|ref|ZP_06177487.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832116|gb|EEZ86240.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 623 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 13/217 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + ++ + ++I ++ + L Q+G G++S D G V+ G + K Sbjct: 291 QSRIEVALSIVDISANDLSQLGVDWRAGIEVGNNSILDIKTTGDVDGGDVTLGSGQTFKS 350 Query: 250 VLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 +LD + +L LE + + ++ PTL A + K + T A Sbjct: 351 LLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLIGRETAALE 410 Query: 307 VTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 T YG +L P ++ I L + E + D+PS R + T Sbjct: 411 EVT--YGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSIRKTEISTLAT 468 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G ++++ G+ +D++ +PLL IP LGALF Sbjct: 469 VKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALF 505 >gi|288937072|ref|YP_003441131.1| general secretion pathway protein D [Klebsiella variicola At-22] gi|290512493|ref|ZP_06551859.1| general secretion pathway protein D [Klebsiella sp. 1_1_55] gi|288891781|gb|ADC60099.1| general secretion pathway protein D [Klebsiella variicola At-22] gi|289774834|gb|EFD82836.1| general secretion pathway protein D [Klebsiella sp. 1_1_55] Length = 651 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 20/214 (9%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 ++ +L AL +T LA P++ + A+F G + T S +T +V Sbjct: 414 NWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGSQTTSGDNIFNTVERK 473 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGT 367 G+ L P + + L I+ EVS ++ ++ R + V + SG T Sbjct: 474 TVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFNTRTVNNAVLVGSGET 533 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFLVKPVAMR 425 +V+ GLL + + +PLL IP++GALFR+ + ++ +FI +P +R Sbjct: 534 VVVGGLLDKSVTDTADKVPLLGDIPVIGALFRSESKKVSKRNLMLFI-------RPTIIR 586 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 D D Y + F+ K++SE Sbjct: 587 D----RDEYRQASSGQYTAFDNAQTKQRGKDSSE 616 >gi|301165498|emb|CBW25069.1| putative pilus assembly protein [Bacteriovorax marinus SJ] Length = 609 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 66/271 (24%), Positives = 120/271 (44%), Gaps = 39/271 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--------------------- 220 KK++++L+ QV ++ I EV + K+IG Q+ + Sbjct: 334 KKIVDVLDTQTP-QVLIESKIVEVNENYRKEIGLQNGVNFGYDPIGQIGSANPTVVGSDV 392 Query: 221 --GSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFS----FETVLHALERATAIRTLA 273 G+++GP SF++ S G S+ G+ + RF+ L LE + + +A Sbjct: 393 LPGTNAGPGFSFSSAPS----SGDGARSLFGLTVTRFNRLLNLSFTLQLLETESKGKIVA 448 Query: 274 EPTLTAISGQSASF-TSGGQHLYKTVSSSTGATSVTTHDY--GVVLHFTPTVLSPGRIGL 330 P + + + A T K++S++ A +T + + L TP V + G I L Sbjct: 449 SPKVITQNKKKAVISTKETTSFSKSLSTNGQAQEITFEEAEASLSLEVTPQVTNEGSISL 508 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + + +A P + R+ T V + +G TIV+ G+ + ++ G+P L Sbjct: 509 ELDLLKQQFGTRPSAAAPPDKQERRVTTNVLVDNGSTIVIGGVYNYEKRESHSGVPFLKD 568 Query: 391 IPILGALFRNSRFNRE--ETEIFIAATPFLV 419 IP++G LFR + + E + E+ I TP +V Sbjct: 569 IPLVGWLFR-TPYAPEVIKQELLIFLTPRIV 598 >gi|90416876|ref|ZP_01224805.1| putative general secretion pathway protein [marine gamma proteobacterium HTCC2207] gi|90331223|gb|EAS46467.1| putative general secretion pathway protein [marine gamma proteobacterium HTCC2207] Length = 629 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 21/220 (9%) Query: 214 GFQHSITGSSSGPSKSFAADFG---GKFVSEGGDF---SVKGVLDRFSFETVLHALERAT 267 G ++TG + AA+ G K ++ GDF + KG+ ++ AL+ Sbjct: 374 GLLATLTGLGISGVEPTAAELGLLPKKVMAVAGDFDSETGKGI------GLLIQALKTDG 427 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKT---VSSSTGA----TSVTTHDYGVVLHFTP 320 + + L+ P++ + + A+ + G + ++T SS+ G+ T++ + GV L P Sbjct: 428 STKILSTPSVVTLDNEEATLSVGEEVPFQTGSFTSSNNGSNNPFTTINREEVGVKLKVKP 487 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + L I+ E S+ GV S + T V + G ++L GL++D Sbjct: 488 QISKGDSVRLEIEQESSKVKSGVPGLQTTSKSTMQ--TNVLIQDGELLILGGLIEDQTGG 545 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +PLL IP+LG LFR++ ++ + + P +++ Sbjct: 546 SATKVPLLGDIPLLGRLFRSTSKADSQSVLMMFIRPTIIR 585 >gi|301166568|emb|CBW26144.1| putative general secretion pathway protein D [Bacteriovorax marinus SJ] Length = 765 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 33/242 (13%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSVTTHDYGV--V 315 ++ A+ LA P + A+ + A F G + +++ G++SV+ V Sbjct: 495 LITAIASNAGTNVLATPQIMALDNEEAVFEVGESIPTPERTNAANGSSSVSIKQQKVAMT 554 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--------YRVRKADTTVELPSGGT 367 L TP V ++ I+ ++ + + ++ +PS R A T+V + T Sbjct: 555 LKITPQV---NKVTRFIKLKIDQKIDDFSSRSLPSGVQSDGVATTTRSAVTSVVVRDRDT 611 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV------KP 421 I + GL++D + +PLL IP+LG LF+N+R + E+ + TP ++ Sbjct: 612 IAMGGLMRDKETDVTSKVPLLGDIPVLGWLFKNTRKSVEKLNLLFFLTPKIIDVYKTANA 671 Query: 422 VAMRD-LSRPDDHYSV---EDD-----AKAFFFNRVNKIYGP----KEASEVEGQNYKGA 468 V ++D L+R H E D AK + + GP +EA E + +N + Sbjct: 672 VNVQDQLNRRSTHLKNALGEKDPFATTAKGLYEKAKKQEQGPLYDQEEADEYKRENEEQG 731 Query: 469 IG 470 IG Sbjct: 732 IG 733 >gi|254373092|ref|ZP_04988581.1| hypothetical protein FTCG_00669 [Francisella tularensis subsp. novicida GA99-3549] gi|151570819|gb|EDN36473.1| hypothetical protein FTCG_00669 [Francisella novicida GA99-3549] Length = 593 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 62/261 (23%), Positives = 111/261 (42%), Gaps = 27/261 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+V+N ++I DQV ++ I EV R ++GF + + SG F Sbjct: 333 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVV-DPSGRVNIGLDTFNSNPNPA 390 Query: 242 GGDFSVKGVLDRF---------------SFETVLHALERATAIRTLAEPTLTAISGQSAS 286 G +D F + + ALE + +A P L + Q A Sbjct: 391 PGPTPTPTPVDTFVGTTAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA- 449 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 F G+ + ++++GA +V + + L TP + G I + I V++ +G + G Sbjct: 450 FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGASPG 507 Query: 347 DMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 P + R+ T V G T+V+ G+ + ++ + IP L IP LG LF Sbjct: 508 KTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFS 567 Query: 400 NSRFNREETEIFIAATPFLVK 420 ++ +++E+ I TP +++ Sbjct: 568 YTKITDQDSELLIFITPKIIE 588 >gi|91786687|ref|YP_547639.1| type II and III secretion system protein [Polaromonas sp. JS666] gi|91695912|gb|ABE42741.1| type II and III secretion system protein [Polaromonas sp. JS666] Length = 717 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 3/144 (2%) Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Q + G L ++S+GATS+ + L TP + G I L + +V++ +G Sbjct: 576 QVKALIEQGTELPYQQATSSGATSIAFRKANLKLEVTPQITPEGNIILNV--DVNKDSVG 633 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + + T V + +GGT+V+ G+ + + ++ + +PLL +P +G LF+ Sbjct: 634 RATANGFAIDTKHIQTQVLVENGGTVVIGGIFEQNDREDETKVPLLGDLPAIGNLFKTKT 693 Query: 403 FNREETEIFIAATP-FLVKPVAMR 425 ++E+ + TP L A+R Sbjct: 694 RTASKSELLVFITPKMLTNGAALR 717 >gi|289625539|ref|ZP_06458493.1| general secretion pathway protein D [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866897|gb|EGH01606.1| general secretion pathway protein D [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 775 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALE + L+ P+L ++ Q A G + S++T +SV Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 630 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS D P R T V SG Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSTADTNSTNNDANGNPRISTRSVATQVAAQSG 690 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ Sbjct: 691 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI 744 >gi|171912205|ref|ZP_02927675.1| general secretion pathway protein D [Verrucomicrobium spinosum DSM 4136] Length = 759 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 20/190 (10%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------VTTHDY 312 L+ LE + L P +T ++ + A+ ++G Q + S+G S V+ Y Sbjct: 530 LNTLEESDRFHVLQRPYVTTLNHKKATISTGQQLAIPGQTYSSGIGSDPDTNGFVSNTQY 589 Query: 313 ---GVVLHFTPTVLSPGRIGLR-IQTEVS-EPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + L P + + L +Q + ++ +P+ + TV +P+G T Sbjct: 590 IPAELKLDIVPHIYDKNEVKLEFVQQNLDIASYTTISGNQVPNLSTQTLSNTVVVPNGAT 649 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-------- 419 I+L GL+ + + K G+P+LS+IP++ LF ++ +E E+ I P +V Sbjct: 650 IILGGLITERDRNNKSGVPVLSRIPLVKHLFGSTAKTKERRELMIFVQPIIVASDDSIAQ 709 Query: 420 KPVAMRDLSR 429 K V + +L+R Sbjct: 710 KQVPIENLNR 719 >gi|42523102|ref|NP_968482.1| general secretion pathway protein D [Bdellovibrio bacteriovorus HD100] gi|39575307|emb|CAE79475.1| general secretion pathway protein D [Bdellovibrio bacteriovorus HD100] Length = 765 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 16/174 (9%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSG-----GQHLYKTVSSSTGATSVTTHDYGV 314 ++ L+ A L+ P L + Q G G+++ +S T + D + Sbjct: 537 INFLKTAKKANILSTPQLMTLDNQEGELEVGDKVVVGENVQNVGTSGTTVRTPQFEDATI 596 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--------YRVRKADTTVELPSGG 366 L P +SP +R+ E+ + V ++ P R T + + +G Sbjct: 597 KLAIKP-FISPASNQIRM--EIKQQVAQLSTASTPKAFQDSTQPLAKRSLKTVINVNNGD 653 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+VL GL+K+ Q+ +PLL IPI+G LF++ +++T + + TP +V+ Sbjct: 654 TVVLGGLMKEQDQESVTKVPLLGDIPIIGWLFKSRTIVKDKTNMVVFLTPKIVR 707 >gi|260775597|ref|ZP_05884494.1| MSHA biogenesis protein MshL [Vibrio coralliilyticus ATCC BAA-450] gi|260608778|gb|EEX34943.1| MSHA biogenesis protein MshL [Vibrio coralliilyticus ATCC BAA-450] Length = 545 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 20/190 (10%) Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------- 302 V+ SF+ V+ + + L+ P +TA + Q A G + T S+ Sbjct: 332 VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDSYFVTDFSTNVDTSSTT 391 Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP-- 349 +T G+ L TP + + G + L + V E G + +P Sbjct: 392 STTSTDIELTPFFSGISLDVTPQIDNDGSVLLHVHPAVIDVTEENKEITNGTSTVSLPLA 451 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + +R++D+ + G +V+ GL+K + +P L +P LG LFRN+ E+TE Sbjct: 452 TSSIRESDSVIRAQDGDVVVIGGLMKSNTLDRTSKVPFLGDVPALGHLFRNTTQYTEKTE 511 Query: 410 IFIAATPFLV 419 + I P +V Sbjct: 512 LVILLKPTVV 521 >gi|329120652|ref|ZP_08249315.1| type IV pilus biogenesis protein PilQ [Neisseria bacilliformis ATCC BAA-1200] gi|327460876|gb|EGF07210.1| type IV pilus biogenesis protein PilQ [Neisseria bacilliformis ATCC BAA-1200] Length = 695 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 3/109 (2%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLL 374 + TP + G+I + I+ V++ + N G P ++ DT + +GGT++L G+ Sbjct: 584 MTVTPQITPDGQIIMDIK--VNKDSVNRNCGASEPCIDTKRLDTKAMVENGGTLILGGIY 641 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +++ + +PLL IP++G LF++ N + E+ I TP +V V Sbjct: 642 EEENSEGVSKVPLLGDIPVVGNLFKSRSRNTSKKELLIFITPRIVDNVG 690 >gi|312795821|ref|YP_004028743.1| Fimbrial assembly protein pilQ precursor [Burkholderia rhizoxinica HKI 454] gi|312167596|emb|CBW74599.1| Fimbrial assembly protein pilQ precursor [Burkholderia rhizoxinica HKI 454] Length = 655 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 44/71 (61%) Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ ++ T+VE+ +GGT+ + G+ D +Q + +P+L IP++GALFR+ + + Sbjct: 479 PAIHTKRVQTSVEVENGGTVAIGGIYSQDDRQDEARVPILGDIPLIGALFRHRIRSDRHS 538 Query: 409 EIFIAATPFLV 419 E+ I TP +V Sbjct: 539 ELIILITPTVV 549 >gi|325109742|ref|YP_004270810.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] gi|324970010|gb|ADY60788.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] Length = 1315 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 15/180 (8%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----- 309 S ++ AL ++ L+ PT+ + Q A G Q + TG + T Sbjct: 997 SVSVLIRALSAKRNVQILSRPTIRTLDNQLAQILVGQQVPIVDGVTITGTIGIATPQIVQ 1056 Query: 310 HDYGVVLHFTPTVLSPGRIGLR-IQTEVSEPVIGV---------NAGDMPSYRVRKADTT 359 G++L TP + G I + + T+ S GV + + P + A T Sbjct: 1057 QQVGIILAVTPRISPDGSIVMETVATKSSLSDEGVPIFTDIETGSVIESPIINLTTAQAT 1116 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V +P+G T+VL G++ D + +P + +PILG FR + TE+ I TP ++ Sbjct: 1117 VSVPNGQTVVLGGMITKDEVSFRRNVPWIGDLPILGIPFRYEGKSTRRTELLIFLTPRVI 1176 >gi|255531011|ref|YP_003091383.1| type II and III secretion system protein [Pedobacter heparinus DSM 2366] gi|255343995|gb|ACU03321.1| type II and III secretion system protein [Pedobacter heparinus DSM 2366] Length = 655 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 14/176 (7%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATSVTTH 310 +F L+ALE I P L ++G +A+ + G Y T V SS +V T Sbjct: 480 NFYVKLNALEANNNIEIRQVPKLATLNGHTANLSIGTTRYYVTKTQNVFSSVNTQTVFTE 539 Query: 311 -----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 D + + +P V ++ L+I+ E+S+ + A P K ++ + + Sbjct: 540 QFNKVDANLAIGISPVVSGDDQVTLKIKVEISDFIGTPPANAPPPTSTSKFESIIRAHNE 599 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 IVL G+ + + G+PLLS+IP+L +F +RE+T+ + F +KP Sbjct: 600 DMIVLGGMERSEKSDSGSGVPLLSRIPVLKWIFS----SREQTKSKVVTLVF-IKP 650 >gi|226327391|ref|ZP_03802909.1| hypothetical protein PROPEN_01261 [Proteus penneri ATCC 35198] gi|225203917|gb|EEG86271.1| hypothetical protein PROPEN_01261 [Proteus penneri ATCC 35198] Length = 367 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 4/150 (2%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P LT ++AS G + Y VS T V + + + TP + +I L Sbjct: 220 IASPRLTTAHEKTASIKQGTEIPY--VSRDNEITQVQFKEAVLGMEVTPIIQRNKKIRLI 277 Query: 332 IQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P I + + + S ++ T V + G TI+L G+ + Q+ IP LS Sbjct: 278 LKISQNTPGIALVQSGSEHLSIDKQEISTEVAIRDGETIMLGGIFQQKQQEHTAKIPFLS 337 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LG LF + R E+ I TP L+ Sbjct: 338 SIPLLGVLFSHKRDQHSRHELVIFITPKLI 367 >gi|134294486|ref|YP_001118221.1| type IV pilus secretin PilQ [Burkholderia vietnamiensis G4] gi|134137643|gb|ABO53386.1| type IV pilus secretin PilQ [Burkholderia vietnamiensis G4] Length = 550 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 10/108 (9%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG--- 372 L P + GR+ L + +V++ IG P+ + T VE+ GGT+ + G Sbjct: 416 LEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVEDGGTVAIGGIYE 473 Query: 373 -LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L +DD+ +PLL +IP+LGALFR+ + + E+ + TP +V Sbjct: 474 QLRRDDVTH----VPLLGRIPVLGALFRHRARSDQRNELVVFITPTVV 517 >gi|145588279|ref|YP_001154876.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046685|gb|ABP33312.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 353 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 14/237 (5%) Query: 189 NIAGEDQVTLKVTIAEV----RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 +I Q+ ++ I E R++ +IG Q ++ GS + S D GG ++ Sbjct: 116 HINSPSQILIEARIVEADERFARELGVKIGQQANLAGSRTDKKISANLDLGGAGLNGFNP 175 Query: 245 FSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 +V L R + L ALE + L+ P + A+ G + Y+T S Sbjct: 176 ATVAATLLSKDASRL-LQMELSALESEGQGKILSNPRIMTGDQVKATIEQGTELPYQTTS 234 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + + + L P + G+I + + +++ IG+ + + + Sbjct: 235 QN--GSKLQFRKANLRLEVLPKIHPDGKISMLVG--INKDTIGMKTEQGYAIDTKSLSSE 290 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 V + +GGT ++ G+ + ++ + IPLL IP+ G LFR+ +++TE+ + TP Sbjct: 291 VTVENGGTAIIGGIYQTTEREDEVKIPLLGDIPLFGHLFRHKSKLKDKTELLVFLTP 347 >gi|332994893|gb|AEF04948.1| pilus (MSHA type) biogenesis protein MshL [Alteromonas sp. SN2] Length = 557 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 101/253 (39%), Gaps = 33/253 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFS 246 QV L+ I EV + G+Q I TG++ + A G + G + Sbjct: 287 QVILEARILEVELND----GYQQGINWNEILANTGNTDFSLSTTAGTLGNDISATLGGVT 342 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT- 305 L++ F VL L ++ L+ P +TAI+ Q A G + T SS Sbjct: 343 SLAFLNK-DFSGVLSLLSTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSDSTVT 401 Query: 306 ----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGD----- 347 +T G+ L TP + G + L + E +E V D Sbjct: 402 STTTSISPDIELTPFFSGIALDVTPQIDDKGTVLLHVHPSVIETAEQQKVVTMDDEQIVL 461 Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + +R++DT + SG +V+ GL++ + PLL IP+ G LF+N + + Sbjct: 462 PLAQSTIRESDTIIRAGSGEIVVIGGLMQTSQTDVVSKTPLLGDIPLFGELFKNRQVSET 521 Query: 407 ETEIFIAATPFLV 419 + E+ I P +V Sbjct: 522 KKELIILLKPTVV 534 >gi|237801193|ref|ZP_04589654.1| general secretion pathway protein D [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024050|gb|EGI04107.1| general secretion pathway protein D [Pseudomonas syringae pv. oryzae str. 1_6] Length = 333 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALER + L+ P+L ++ Q A G + S++T +SV Sbjct: 129 NLQVALRALERNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 188 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS + D P R T V SG Sbjct: 189 YVQTGVILDVVPRINPGGLVYMDIQQQVSNADNNASNNDANGNPRISSRSVSTQVAAQSG 248 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 TI+L GL+K D + + +P L +IP L LF + ++ TE+ + TP ++ Sbjct: 249 QTILLGGLIKQDNAETVDAVPYLGRIPGLRWLFGTTSKSKGRTELIVLITPRVI 302 >gi|251788920|ref|YP_003003641.1| general secretion pathway protein D [Dickeya zeae Ech1591] gi|247537541|gb|ACT06162.1| general secretion pathway protein D [Dickeya zeae Ech1591] Length = 716 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 32/192 (16%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG---------------GQHLYKT 297 R ++ +L AL LA P++ + A+F G G +++ T Sbjct: 478 RGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGQQTTMGSGSNIFNT 537 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVR 354 V T G+ L P + + L+I+ EVS G N+ ++ R Sbjct: 538 VERKT---------VGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNSSTNSSLGVTFNTR 588 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + V + +G T+V+ GLL + +PLL IP LG+LFR+ + + + + Sbjct: 589 TVNNAVMVTNGETVVVGGLLDKSTIETNNKVPLLGDIPWLGSLFRSKSQSMSKRNLML-- 646 Query: 415 TPFLVKPVAMRD 426 ++P +RD Sbjct: 647 ---FLRPTIIRD 655 >gi|254000203|ref|YP_003052266.1| type IV pilus secretin PilQ [Methylovorus sp. SIP3-4] gi|253986882|gb|ACT51739.1| type IV pilus secretin PilQ [Methylovorus sp. SIP3-4] Length = 714 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 3/147 (2%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + ++ P +T + + A G + Y SSS GATSV D + L TP V +I Sbjct: 561 KVVSSPRVTTANQKKAQIQQGTKIPYLRASSS-GATSVQFVDATLSLEVTPQVTPDDKII 619 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +G +PS + DT V + +G T VL G+ + + + +P Sbjct: 620 MDL--TIKKDRVGQIFSGVPSIETQSVDTQVLVSNGETAVLGGIYEQTERNDVDKVPFFG 677 Query: 390 KIPILGALFRNSRFNREETEIFIAATP 416 IP LG F+ ++TE+ I TP Sbjct: 678 DIPFLGNAFKRRVKQNDKTELLIFITP 704 >gi|260778653|ref|ZP_05887545.1| type III secretion system outer membrane pore YscC [Vibrio coralliilyticus ATCC BAA-450] gi|260604817|gb|EEX31112.1| type III secretion system outer membrane pore YscC [Vibrio coralliilyticus ATCC BAA-450] Length = 484 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 24/221 (10%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----AADFGGKFVSEGGDFSVKGV 250 + + VTI +V Q+G S G S +F ++D + G+F V+ Sbjct: 263 IEVSVTIIDVDTSDFNQLGIDWSAAAKFGGGSVTFNQGSLSSDNFSTVIGNTGNFMVR-- 320 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTT 309 L+ALE+ + + L+ P++ ++ A K SVTT Sbjct: 321 ---------LNALEQNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKIEGEKVAKLESVTT 371 Query: 310 HDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSG 365 G +L TP +++ ++ L + + + V++ D +P + T L +G Sbjct: 372 ---GSLLRVTPRLVNENNFKKVMLSLNIQDGQQAKPVSSKDPLPQVENSEIATQATLKTG 428 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +++L G ++D ++ IPLL IP+LG LFR++ +++ Sbjct: 429 ESLLLGGFVQDKDHTVENKIPLLGDIPLLGGLFRSTDHSKQ 469 >gi|115376293|ref|ZP_01463533.1| type IV pilus secretin PilQ subfamily, putative [Stigmatella aurantiaca DW4/3-1] gi|310823667|ref|YP_003956025.1| type IV pilus secretin PilQ [Stigmatella aurantiaca DW4/3-1] gi|115366718|gb|EAU65713.1| type IV pilus secretin PilQ subfamily, putative [Stigmatella aurantiaca DW4/3-1] gi|309396739|gb|ADO74198.1| Type IV pilus secretin PilQ [Stigmatella aurantiaca DW4/3-1] Length = 906 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 5/156 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E ++T++ P +T + +A + G + + +S+ GA + T + + L T Sbjct: 739 LSAAENDGYVKTISAPKVTTLDNNTARISQGVSIPF-SQTSANGANT-TFIEARLSLEVT 796 Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G I + I + ++P A P+ + ++A+T V + G T V+ G+ Sbjct: 797 PHITQDGSILMNIIAQNNQPDAANTGANGQPAIQRKEANTQVLVKDGDTTVIGGIYVRRG 856 Query: 379 QQLKEGIPLLSKIPILGALFRNS--RFNREETEIFI 412 IP SKIP+LG FR + R +R+E IFI Sbjct: 857 STNHASIPFFSKIPVLGFFFRQTTERDDRQELLIFI 892 >gi|189424524|ref|YP_001951701.1| type II and III secretion system protein [Geobacter lovleyi SZ] gi|189420783|gb|ACD95181.1| type II and III secretion system protein [Geobacter lovleyi SZ] Length = 769 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVN-AGDMPSYRVRKADTTVELPS 364 D GV ++ PT+ + +++ EVS E V G + A + + R DT + L Sbjct: 468 DVGVKVNAEPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTIGTRNLDTVLSLKD 527 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T V+ GL+ K+ I LL IP++G L NS+ + ++TE+ +A TP LV+ V + Sbjct: 528 GETSVIGGLISHSNSDSKQKIFLLGDIPLIGPLLSNSKTDNDKTELILAITPRLVRGVTV 587 Query: 425 R 425 + Sbjct: 588 Q 588 >gi|262066840|ref|ZP_06026452.1| general secretion pathway protein D [Fusobacterium periodonticum ATCC 33693] gi|291379452|gb|EFE86970.1| general secretion pathway protein D [Fusobacterium periodonticum ATCC 33693] Length = 514 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 23/240 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV + I ++ ++ +++GF + +S S A GK G S ++ + Sbjct: 269 QVKISSQILDISNNLFEELGFDWVYKQNVASEERNSLTAIILGK-AGLNGIGSTLNIVRQ 327 Query: 254 FS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 F+ T L+ LE + + PTL SG+ F + + ++ Sbjct: 328 FNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENKNDRH 387 Query: 309 TH----DYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV 353 T + G+++ P + I L I E+S+ + +N+G S +V Sbjct: 388 TEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDINSGTYNSEGGSKV 447 Query: 354 RKADTT-VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +A TT V + G TI++ GL K Q ++ IP+L IPI+ F+N+ RE ++++I Sbjct: 448 GRALTTKVRVKDGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENSDMYI 507 >gi|71909017|ref|YP_286604.1| type II and III secretion system protein [Dechloromonas aromatica RCB] gi|71848638|gb|AAZ48134.1| type II and III secretion system protein [Dechloromonas aromatica RCB] Length = 594 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 16/128 (12%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTI 368 V L+ PT+ S R EV +P + + P R R+ ++ + + SG Sbjct: 454 AVTLNVRPTITSVAR-------EVQDPNPDLKKNSISNLVPVIRTREIESIMRVASGNIA 506 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +L GL++D I + +PLL +IPI G L N ++TE+ I ++PV ++D S Sbjct: 507 ILGGLMEDKIDYQTQRVPLLGQIPIAGELVNNRNNAAQKTELVI-----FLRPVVIKDAS 561 Query: 429 RPDDHYSV 436 D+ ++ Sbjct: 562 LEGDYANM 569 >gi|242238911|ref|YP_002987092.1| general secretion pathway protein D [Dickeya dadantii Ech703] gi|242130968|gb|ACS85270.1| general secretion pathway protein D [Dickeya dadantii Ech703] Length = 714 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 12/179 (6%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 ++ +L AL + LA P++ I A+F G + T S +T A ++V Sbjct: 482 NWSMLLTALSSNSKNDVLATPSIVTIDNMEATFNVGQEVPVLTGSQTTSADNIYSTVERK 541 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGT 367 G+ L P + + L+I+ EVS ++ ++ R + V + +G T Sbjct: 542 TVGIKLKVKPQINEGDSVLLQIEQEVSSVADSSSSTSSDLGATFNTRTVNNAVMVTNGET 601 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +V+ GLL + +PLL IP+LG LFR+ + + + ++P +RD Sbjct: 602 VVVGGLLNKSTVETDSKVPLLGDIPVLGNLFRSKSLTVSKRNLML-----FLRPTIIRD 655 >gi|163781944|ref|ZP_02176944.1| putative type II secretion system protein [Hydrogenivirga sp. 128-5-R1-1] gi|159883164|gb|EDP76668.1| putative type II secretion system protein [Hydrogenivirga sp. 128-5-R1-1] Length = 518 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/254 (23%), Positives = 113/254 (44%), Gaps = 33/254 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI-------TGSSSGPSKSFAADFGGKFVSEGGDFSV 247 QV ++ I E+ + Q G S TG++ S++ + + GG FS+ Sbjct: 274 QVLIEAKIVEIALSDVFQYGIDWSTFFRDVFGTGANVTLSQTLS-------IPTGGFFSL 326 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGA 304 V FS T+++AL + TL+ P + +GQ+A +G + + V+ + Sbjct: 327 NVVSSDFS--TLVNALATYGKVYTLSNPRIMVSNGQTALIATGIVTPFFERQAVTITGTT 384 Query: 305 TSVTTHDY-------GVVLHFTPTVLSPGRIGL-------RIQTEVSEPVIGVNAGDMPS 350 T+ + GV+L TP + G I + R++ + V G + P Sbjct: 385 TTQIQENIVKTNVLEGVLLGVTPYIDDNGSIVMNIIPVATRLEGSKTLEVNGQVLAEAPI 444 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +++ T V + +G +V+ GL+ D + +P L IP+LG LF++ R +E+ E+ Sbjct: 445 LNIKETGTIVRVRNGELVVIGGLIGDVRSVQERKVPGLGDIPVLGYLFKSKRTVKEKREL 504 Query: 411 FIAATPFLVKPVAM 424 I P ++ + + Sbjct: 505 IIFLRPRIIDNIGL 518 >gi|116747987|ref|YP_844674.1| type IV pilus secretin PilQ [Syntrophobacter fumaroxidans MPOB] gi|116697051|gb|ABK16239.1| type IV pilus secretin PilQ [Syntrophobacter fumaroxidans MPOB] Length = 636 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 12/184 (6%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + + ALE A IR +A P + ++ A + G Q Y V + A+++T D+ Sbjct: 460 LKVDLTISALETADEIRIMAAPRVLTMNNVKAVISQGVQIPYLKVGDT--ASNITGTDFK 517 Query: 314 ---VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIV 369 + L TP + ++ + I+ + EP V A P RK T + + G IV Sbjct: 518 DAVLELAVTPHITPDHKVRMTIEAKQDEPSSTVTGAQGQPGIDTRKISTELLVDDGNIIV 577 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + G++++ + K P LS +PILG LF+++ + + EI I P +V D+++ Sbjct: 578 IGGIIRNRDEAKKTATPGLSDVPILGRLFKSNEVDAQRNEILIFICPKIV------DVTK 631 Query: 430 PDDH 433 P D Sbjct: 632 PSDR 635 >gi|167915591|ref|ZP_02502682.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 112] Length = 322 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 161 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 217 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 218 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 273 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 274 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 322 >gi|33151657|ref|NP_873010.1| competence protein E [Haemophilus ducreyi 35000HP] gi|33147878|gb|AAP95399.1| competence protein E [Haemophilus ducreyi 35000HP] Length = 419 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 1/162 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + +A P L + + AS G + Y + ++ + + L T Sbjct: 253 LTALEQENNVEIIASPRLLTTNKKPASIKQGAEIPYVLYNRKDEVKNIEFKEAVLGLQVT 312 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + + +I L + + P + A + + + ++ +T V G TIVL G+ + Sbjct: 313 PHISADNQILLDLVVTQNSPNLNNTAVNGLITIDKQELNTQVFAKHGETIVLGGIFQHLT 372 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +PLL IP+L LF +S + E+ I TP+LV+ Sbjct: 373 AKGEDRVPLLGSIPVLKKLFSHSTDKITKRELVIFVTPYLVQ 414 >gi|239814080|ref|YP_002942990.1| general secretion pathway protein D [Variovorax paradoxus S110] gi|239800657|gb|ACS17724.1| general secretion pathway protein D [Variovorax paradoxus S110] Length = 774 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 28/244 (11%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 PS GK GG + + + + F+ + + L + TL + GQ+ Sbjct: 479 PSSGLNLGIAGKI---GGQYILGAIANFFNSDGDANVLSTPNLL-TLDNEEAKIVIGQNV 534 Query: 286 SFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 F +G Y + S S G TT D G+ L PT+ G + + I E S V G Sbjct: 535 PFVTG---QYASTSGSVGINPFTTVERKDVGLTLRVRPTINENGTVKMTIFQETST-VDG 590 Query: 343 --VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +N + P+ R +++V + GG ++L GLL DD E +P+ IP+LG LF+N Sbjct: 591 NTINNPNGPTTNKRSIESSVLVEDGGLVMLGGLLSDDYGNTIEKVPVAGDIPVLGNLFKN 650 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 R ++ + + ++P MRD + +AF ++R ++I G ++ ++ Sbjct: 651 EIRTRNKSNLMM-----FLRPAVMRDGA----------STEAFAYDRYDEIRGMQQRTQP 695 Query: 461 EGQN 464 N Sbjct: 696 NTDN 699 >gi|74317318|ref|YP_315058.1| type II secretion system protein D [Thiobacillus denitrificans ATCC 25259] gi|74056813|gb|AAZ97253.1| type II secretion system protein D [Thiobacillus denitrificans ATCC 25259] Length = 667 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 7/120 (5%) Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRV--RKADTTV 360 +V D G+ P + + +++ EVS +G V YRV R A TT+ Sbjct: 442 TVNYLDVGIKFEVEPLISLNDEVTIKVALEVSS--LGQKSVTKSGSEVYRVGTRNASTTL 499 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G T LAGL+ D+ ++ GIP +IP +G LF + + ++TEI + TP +V+ Sbjct: 500 ALRDGETQALAGLISDEERETVNGIPGFGRIPAIGRLFASKSNSTDKTEIVLLITPHIVR 559 >gi|254253479|ref|ZP_04946797.1| Type II secretory pathway component HofQ [Burkholderia dolosa AUO158] gi|124896088|gb|EAY69968.1| Type II secretory pathway component HofQ [Burkholderia dolosa AUO158] Length = 549 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 10/133 (7%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P GR+ L + +V++ +G P+ Sbjct: 390 GSELPYQAKVGNGVSGVQFRRATLKLEVEPQSTPDGRVVLDL--DVTKDSVGEPTAAGPA 447 Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + T VE+ GGT+ + G L +DD+ + +PLL KIP+LGALFR+ + Sbjct: 448 IHTKHVQTRVEVEDGGTVAIGGIYEQLNRDDVTR----VPLLGKIPVLGALFRHQARRDQ 503 Query: 407 ETEIFIAATPFLV 419 +E+ + TP +V Sbjct: 504 RSELVVFITPTVV 516 >gi|238764026|ref|ZP_04624981.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia kristensenii ATCC 33638] gi|238697697|gb|EEP90459.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia kristensenii ATCC 33638] Length = 481 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 12/212 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ + VTI +V + Q+G S + S G SF + G S G +V G D Sbjct: 255 QIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNS--GEPQNSANGFSTVIG--DSG 310 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +F L+AL++ + R L+ P++ ++ A K T G Sbjct: 311 NFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKLQGDKVAKLESITS--GS 368 Query: 315 VLHFTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 +L TP ++ + L IQ + I ++ +P + T L G +++ Sbjct: 369 LLRVTPRMIDADGVKEVLLNLNIQDGQQQASIS-SSEPLPEIQNSDISTQATLRVGQSLL 427 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 L G ++D + + IPLL IP+LG LFRN+ Sbjct: 428 LGGFIQDKQIESQNKIPLLGDIPLLGGLFRNT 459 >gi|254785258|ref|YP_003072686.1| MSHA type biogenesis protein, MshL [Teredinibacter turnerae T7901] gi|237687142|gb|ACR14406.1| MSHA type biogenesis protein, MshL [Teredinibacter turnerae T7901] Length = 570 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 109/249 (43%), Gaps = 24/249 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH-SITGS---SSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L+ I EV+ + + G +ITG+ +S S + G K + GV Sbjct: 294 QVVLETKIIEVQLNDGYEAGVNWGAITGALGVASDSSLVMTNNDGVKSKIRTTQNLLSGV 353 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---------VSSS 301 L+ E +L+ LE ++ L+ P ++ ++ Q A G + T S+ Sbjct: 354 LNVTRIEDLLNLLETQGNVQVLSSPRISTVNNQKAIIRVGTDEFFVTGITNNTTTTASNI 413 Query: 302 TGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMP-----SY 351 + V + G+ L TP + G + + + ++V + + ++ GD+ + Sbjct: 414 QNSPEVLLDSFFSGIALDVTPQIAEDGDVIIHVHPLVSKVQDQLKDISIGDLDYSLPLAL 473 Query: 352 R-VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R VR++D+ V +G +VL GL+++ + P L IP + LF+ + +TE+ Sbjct: 474 RDVRESDSIVRASNGQVVVLGGLMQETTSDVATKRPFLGDIPGVNVLFKGRAKRKVKTEL 533 Query: 411 FIAATPFLV 419 I P +V Sbjct: 534 VILMRPIVV 542 >gi|237738589|ref|ZP_04569070.1| general secretion pathway protein D [Fusobacterium sp. 2_1_31] gi|229424072|gb|EEO39119.1| general secretion pathway protein D [Fusobacterium sp. 2_1_31] Length = 514 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 23/240 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV + I ++ ++ +++GF + +S S A GK G S+ ++ + Sbjct: 269 QVKISSQILDISNNLFEELGFDWVYRQNVASEERNSLTAIILGKAGLNGVGSSL-NIVRQ 327 Query: 254 FS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 F+ T L+ LE + + PTL SG+ F + + ++ Sbjct: 328 FNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENKNDRH 387 Query: 309 TH----DYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV 353 T + G+++ P + I L I E+S+ + +N+G S +V Sbjct: 388 TEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDINSGTYNSEGGSKV 447 Query: 354 RKADTT-VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +A TT V + +G TI++ GL K Q ++ IP+L IPI+ F+N+ RE ++++I Sbjct: 448 GRALTTKVRVKNGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENSDMYI 507 >gi|330966297|gb|EGH66557.1| general secretion pathway protein D [Pseudomonas syringae pv. actinidiae str. M302091] Length = 775 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALE + L+ P+L ++ Q A G + S++T +SV Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 630 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS N D P R T V SG Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSNADTNTNNNDANGNPRISSRSVSTQVAAQSG 690 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ Sbjct: 691 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTTKSKGRTELIVLITPRVI 744 >gi|312883863|ref|ZP_07743580.1| hypothetical protein VIBC2010_01233 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368321|gb|EFP95856.1| hypothetical protein VIBC2010_01233 [Vibrio caribbenthicus ATCC BAA-2122] Length = 619 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 16/233 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVK 248 + ++ + ++I ++ + L Q+G G S G +K + D V G + Sbjct: 287 QSRIEVALSIVDISANNLSQLGVDWR-AGVSVGNNKIVDINTTGDVTNGDVLLGSGQTFN 345 Query: 249 GVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +LD + +L + LE + + ++ PTL A ++ K V T A Sbjct: 346 SLLDATNLNFLLAQINLLESQGSAQVVSRPTLLTQENVEAVLSNSTTFYVKLVGRETAAL 405 Query: 306 SVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T YG +L P ++ I L + E + +PS R + T Sbjct: 406 DEVT--YGTLLRIVPRIVGDRFAERPEINLSLNLEDGAQIPDNVIDGVPSIRKTEISTLA 463 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR-FNREETEIFI 412 + G ++++ G+ +D+I Q +PLL IP LGALFR++ R +FI Sbjct: 464 TVKQGQSLLIGGVYRDEISQQLRKVPLLGDIPYLGALFRSTNDITRRTVRMFI 516 >gi|294781789|ref|ZP_06747122.1| general secretion pathway protein D [Fusobacterium sp. 1_1_41FAA] gi|294481899|gb|EFG29667.1| general secretion pathway protein D [Fusobacterium sp. 1_1_41FAA] Length = 514 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 23/240 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV + I ++ ++ +++GF + +S + A GK G S ++ + Sbjct: 269 QVKISSQILDISNNLFEELGFDWVYRQNIASEERNTLTAIILGK-AGLNGVGSTLNIVRQ 327 Query: 254 FS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 F+ T L+ LE + + PTL SG+ F + + ++ Sbjct: 328 FNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENKNDRH 387 Query: 309 TH----DYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV 353 T + G+++ P + I L I E+S+ + VN+G S +V Sbjct: 388 TEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDVNSGTYNSEGGSKV 447 Query: 354 RKADTT-VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +A TT V + +G TI++ GL K Q ++ IP+L IPI+ F+N+ RE ++++I Sbjct: 448 GRALTTKVRVKNGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENSDMYI 507 >gi|330875847|gb|EGH09996.1| general secretion pathway protein D [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 775 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 9/174 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ------HLYKTVSSSTGATSVT 308 + + L ALE + L+ P+L ++ Q A G + S++T +SV Sbjct: 571 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVE 630 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS N D P R T V SG Sbjct: 631 YVQTGVILDVVPRINPGGLVYMDIQQQVSNADTNTNNNDANGNPRISSRSVSTQVAAQSG 690 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ Sbjct: 691 QTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTTKSKGRTELIVLITPRVI 744 >gi|254428336|ref|ZP_05042043.1| type IV pilus secretin PilQ subfamily, putative [Alcanivorax sp. DG881] gi|196194505|gb|EDX89464.1| type IV pilus secretin PilQ subfamily, putative [Alcanivorax sp. DG881] Length = 693 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 9/167 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 E L ALE +A P + Q A SG Q ++ V++S+GATS+ + + Sbjct: 528 IELELSALEAEGHGELVATPKVLTADQQPAVIASGQQVPFE-VATSSGATSIDFVEAELR 586 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + G I + ++ ++ + + +T+V + G T+VL G+ + Sbjct: 587 LEVTPHITPDGNIIMTLKVNND----SFSSDGSAAINTNRVETSVLVNDGETVVLGGIFQ 642 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNS--RFNREETEIFIAATPFLVK 420 + P L +P +G LFR + R N++E IFI TP L+K Sbjct: 643 QEKINSVTKTPFLGDLPWIGNLFRKTVNRDNKQELLIFI--TPRLMK 687 >gi|167724326|ref|ZP_02407562.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei DM98] Length = 308 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 147 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 203 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 204 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 259 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 260 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 308 >gi|304321270|ref|YP_003854913.1| general secretion pathway protein D [Parvularcula bermudensis HTCC2503] gi|303300172|gb|ADM09771.1| general secretion pathway protein D [Parvularcula bermudensis HTCC2503] Length = 736 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 16/184 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 + +L AL+ + L P++ + + + G Q + + G+ + Sbjct: 484 YGVLLSALQSDSQSNVLQVPSIVLLDNEEGTIQVG-QEVPVVTGEAVGSDFQGGFRQIER 542 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGT 367 + G +L P + + + L++ EVS +G A D P D TV G T Sbjct: 543 KNIGNILQVKPQITAGNTVQLKLNLEVSS--LGAFAPDAQGPITNESILDLTVSAEDGQT 600 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +VL GL+ D +Q + +P+L IP+LG LF+ + +E+ + I ++P +RD Sbjct: 601 LVLGGLVDKDRRQTESKVPVLGDIPLLGNLFKGQAQSDQESTLMI-----FIRPTILRDA 655 Query: 428 SRPD 431 D Sbjct: 656 QAAD 659 >gi|62184688|ref|YP_219473.1| putative general secretion protein [Chlamydophila abortus S26/3] gi|62147755|emb|CAH63499.1| putative general secretion protein [Chlamydophila abortus S26/3] Length = 908 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313 +L AL++ + P + A Q ASF G ++T S+ T T D G Sbjct: 688 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIG 747 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 748 VNLVVASTIAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLVMSGH 806 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D ++ G+PLL+ IP+L LF + R++ I + P ++ Sbjct: 807 IRDKTTKIVTGVPLLNSIPLLRGLFSRTIDQRQKRNIMMFIKPKVI 852 >gi|254447504|ref|ZP_05060970.1| type 4 fimbrial biogenesis protein PilQ [gamma proteobacterium HTCC5015] gi|198262847|gb|EDY87126.1| type 4 fimbrial biogenesis protein PilQ [gamma proteobacterium HTCC5015] Length = 721 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 2/142 (1%) Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSE 338 + Q +F G + ++S+GA +V + L TP + RI L ++ + Sbjct: 574 ANQKEAFIEQGVEIPYLEAASSGAVTVAFKKAVLSLTATPQITPDDRIILDLNVKKDNVG 633 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +PS R+ +T V + +G T+VL G+ + + IP L IP +G LF Sbjct: 634 EIFGEGEIQVPSIDTREVETQVLVKNGETVVLGGIFEHETLDSVTKIPFLGDIPGIGRLF 693 Query: 399 RNSRFNREETEIFIAATPFLVK 420 R + EI I TP +V+ Sbjct: 694 RREIKQNSKREILIFVTPKIVR 715 >gi|119475553|ref|ZP_01615906.1| Type II secretory pathway, component PulD [marine gamma proteobacterium HTCC2143] gi|119451756|gb|EAW32989.1| Type II secretory pathway, component PulD [marine gamma proteobacterium HTCC2143] Length = 558 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/288 (22%), Positives = 115/288 (39%), Gaps = 27/288 (9%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKF 238 ++++ +N + QV L+ I EV + Q G Q S+ G+ +G + F Sbjct: 261 AAREFLNRAEVIMRRQVVLEAKILEVELNDGYQTGIQWESMGGTLNGNTLDFGVSGSSPV 320 Query: 239 VSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 S + V + F V+ LE +++ L+ P ++ ++ Q A G + Sbjct: 321 SSNSVGGAFSAVYESVGDFSGVIELLETQGSVQVLSSPRISTVNNQKAVIKVGTDEFFVT 380 Query: 296 ---------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------- 339 ++S +T G+ L TP + I L I +SE Sbjct: 381 EISNSTTTSTGATTSNPEIELTPFFSGIALDVTPQISDNDEIILHIHPSISEVRDQTKVI 440 Query: 340 VIGVNAGDMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 +G ++P +R+ D+ V SG +VL GL++ G P+L +P +G L Sbjct: 441 TLGDQTVEVPLALSTIRETDSIVYARSGQVVVLGGLMQTKSVDNNSGTPVLGNLPGVGHL 500 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD-----LSRPDDHYSVEDDA 440 F R + E+ I P ++ P + D SR D+ V D++ Sbjct: 501 FSQQRNKTVKNELVILLRPVIMGPSGLPDSLDTSRSRFDEFRRVLDNS 548 >gi|313847597|emb|CBY16585.1| putative general secretion protein [Chlamydophila psittaci RD1] Length = 907 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313 +L AL++ + P + A Q ASF G ++T S+ T T D G Sbjct: 687 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIG 746 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L TV + L+I+ +SE + P A T +++P G +V++G Sbjct: 747 VNLVVASTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLVMSGH 805 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 806 IRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 851 >gi|167820470|ref|ZP_02452150.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 91] gi|167828842|ref|ZP_02460313.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 9] Length = 315 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 154 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 210 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 211 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 266 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 267 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 315 >gi|160901009|ref|YP_001566591.1| type IV pilus secretin PilQ [Delftia acidovorans SPH-1] gi|160366593|gb|ABX38206.1| type IV pilus secretin PilQ [Delftia acidovorans SPH-1] Length = 716 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/215 (23%), Positives = 99/215 (46%), Gaps = 13/215 (6%) Query: 214 GFQHSITGSSSGPSKSFAADF----GGKF--VSEGGDFSV---KGVLDRFSFETVLHALE 264 G+++++ S SG + + + +F K VS G F++ +RF L A+E Sbjct: 500 GYENAVASSGSGGTVNTSGNFVNLPAAKLTGVSGTGSFALSIFNSAANRF-LALELSAME 558 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + ++ P L A G ++ Y +V++ GAT++ + L TP + Sbjct: 559 ADGQGKIISSPRLVTADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVTPQITP 617 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G I L + +V++ G + + T V + +GGT+V+ G+ + + + Sbjct: 618 EGDIILDL--DVNKDSRGETTTQGVAIDTKHIKTQVLVQNGGTVVIGGIFEMEETNQESK 675 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP L +P+LG LF++ ++ E+ + TP ++ Sbjct: 676 IPFLGDVPVLGHLFKSRVRESQKREMLVFITPKMI 710 >gi|167743291|ref|ZP_02416065.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 14] gi|167850302|ref|ZP_02475810.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei B7210] gi|167898903|ref|ZP_02486304.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 7894] Length = 318 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 157 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 213 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 214 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 269 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 270 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 318 >gi|76819172|ref|YP_335807.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1710b] gi|226198470|ref|ZP_03794038.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|254264542|ref|ZP_04955407.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] gi|254301393|ref|ZP_04968837.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|76583645|gb|ABA53119.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710b] gi|157811287|gb|EDO88457.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|225929527|gb|EEH25546.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|254215544|gb|EET04929.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] Length = 601 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|237807143|ref|YP_002891583.1| general secretion pathway protein D [Tolumonas auensis DSM 9187] gi|237499404|gb|ACQ91997.1| general secretion pathway protein D [Tolumonas auensis DSM 9187] Length = 685 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 18/185 (9%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----H 310 ++ ++ AL T LA P++ + + A+F G + T S S+ A SV + Sbjct: 441 NWAGLVTALSSNTKSNILATPSIVTLDNKEAAFNVGQEVPVVTGSQSSTAGSVYSTVERK 500 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---------SYRVRKADTTVE 361 G L TP + + L ++ EVS + ++ R +V Sbjct: 501 TVGTKLKVTPQINEGDSVLLEVEQEVSSVASSSSTDSSSSSSNSSLGSTFNTRTVKNSVL 560 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + SG T+VL GLL ++ + +PLL IPILG LFR + + + + + + P Sbjct: 561 VKSGETVVLGGLLSNNTSESVYKVPLLGDIPILGYLFRYNGTSTTKQNLMV-----FIHP 615 Query: 422 VAMRD 426 +RD Sbjct: 616 TILRD 620 >gi|322436034|ref|YP_004218246.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] gi|321163761|gb|ADW69466.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] Length = 635 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 6/147 (4%) Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTVLSPGRIGLRIQ 333 A S A T GG ++ GA+S T D G+ L TPTVL G I + I Sbjct: 469 ATSSALAGVTVGGVSASSLLNQYLGASSQTIPQIQYEDIGITLKTTPTVLKSGLITMHID 528 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 ++ E + G +A ++P R + V P G T ++ L GIP L+++P Sbjct: 529 LKI-EALTGQSANNIPVLTSRVFTSDVTCPEGSTAMMLSQLSSQESAAVSGIPGLAELPG 587 Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420 + R+ +E+ + TP LV+ Sbjct: 588 FQTSVADRITERDSSELVMMVTPHLVR 614 >gi|167907227|ref|ZP_02494432.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei NCTC 13177] Length = 327 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 166 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 222 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 223 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 278 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 279 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 327 >gi|167566263|ref|ZP_02359179.1| type II/III secretion system protein [Burkholderia oklahomensis EO147] Length = 311 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 150 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 206 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 207 LPMVVEEGGHTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 262 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P+LSK+P++GALFR++ TE TP +++P Sbjct: 263 YKVDSRSSTLSGVPVLSKLPLVGALFRSTDKQDSHTERLFLVTPRVIEP 311 >gi|91070466|gb|ABE11376.1| putative general (type II) secretion pathway protein D precursor [uncultured Prochlorococcus marinus clone HOT0M-10G7] Length = 640 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 345 AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 G + VRK DT ++ + +G T++L G+L+D +P+L IPI G++FR+S Sbjct: 562 CGIQNTLSVRKLDTGSIRVQNGETLILTGVLQDSDTVTTSKVPILGDIPIFGSIFRSSAT 621 Query: 404 NREETEIFIAATPFLVK 420 +++ E+ I TP ++K Sbjct: 622 QKKKNELIILVTPKILK 638 >gi|294141031|ref|YP_003557009.1| type III secretion system EscC protein [Shewanella violacea DSS12] gi|293327500|dbj|BAJ02231.1| type III secretion system EscC protein, putative [Shewanella violacea DSS12] Length = 491 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 27/222 (12%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----EGGDFSVKGVL 251 + + V+I ++ KQ+G S + S SF +D + +S G+F VK Sbjct: 269 IEISVSILDIDASDFKQLGVDWSASAQLGNGSVSFNSDTSSENISTVIGNTGNFMVK--- 325 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310 L+ALE+ + + L+ P++ ++ A K SVTT Sbjct: 326 --------LNALEKNSKAKVLSHPSVVTLNNVQAVLDKNVTFYTKLEGDKVAKLESVTT- 376 Query: 311 DYGVVLHFTPTVLSPG-----RIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 G +L TP ++ + L IQ + SE V + +P + + T L S Sbjct: 377 --GTLLRVTPRLIEESGHTAVMLNLNIQDGQQSEAV--SRSDPLPQVQNSEISTQAILKS 432 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 G ++++ G ++D + IPLL IP+LG LFR++ + + Sbjct: 433 GESLLIGGFVQDRDETSDHKIPLLGDIPLLGGLFRSTEHHTQ 474 >gi|271501355|ref|YP_003334380.1| general secretion pathway protein D [Dickeya dadantii Ech586] gi|270344910|gb|ACZ77675.1| general secretion pathway protein D [Dickeya dadantii Ech586] Length = 713 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 22/192 (11%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------S 306 R ++ ++ AL + LA P++ + A+F G + T S +T + + Sbjct: 475 RGNWSMLMTALSSDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQTTVGSGNNIFNT 534 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRKAD 357 V G+ L P + + L+I+ EVS +GV ++ R + Sbjct: 535 VERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSANSSLGV------TFNTRTVN 588 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 V + +G T+V+ GLL + +PLL IP+LG LFR+ + ++ + + P Sbjct: 589 NAVMVSNGETVVVGGLLDKSTDENNSKVPLLGDIPVLGNLFRSKSQSVKKRNLMLFLRPT 648 Query: 418 LVK-PVAMRDLS 428 +++ P +D S Sbjct: 649 IIRDPKQFQDAS 660 >gi|159903356|ref|YP_001550700.1| Type II secretory pathway, component PulD [Prochlorococcus marinus str. MIT 9211] gi|159888532|gb|ABX08746.1| Type II secretory pathway, component PulD [Prochlorococcus marinus str. MIT 9211] Length = 575 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 344 NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + G++ + +R+ DT + + G T+VL G++K+D + P+L IP+ G LFR + Sbjct: 479 DCGNISTLSIRRLDTGNIRVRDGDTLVLTGVIKEDDTKAITKTPVLGDIPLFGRLFRTNS 538 Query: 403 FNREETEIFIAATPFLVK 420 R+++E+ I TP ++K Sbjct: 539 TVRKKSELIIMVTPKVIK 556 >gi|238787451|ref|ZP_04631249.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia frederiksenii ATCC 33641] gi|238724238|gb|EEQ15880.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia frederiksenii ATCC 33641] Length = 481 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 12/212 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ + VTI +V + Q+G S + S G SF + G S FS + D Sbjct: 255 QIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNS---GNAKSNADGFSTV-IGDTG 310 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +F L+AL++ + R L+ P++ ++ A K T G Sbjct: 311 NFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKLQGDKVAKLESVTS--GS 368 Query: 315 VLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 +L TP +++ + L IQ + I ++ +P + T L G +++ Sbjct: 369 LLRVTPRMINSDGVKEVMLNLNIQDGQQQAPIS-SSEPLPEIQNSDISTQATLRVGQSLL 427 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 L G ++D + + IPLL IP+LG LFR++ Sbjct: 428 LGGFIQDKQIESQNKIPLLGDIPLLGGLFRST 459 >gi|329942358|ref|ZP_08291168.1| bacterial type II and III secretion system family protein [Chlamydophila psittaci Cal10] gi|332287000|ref|YP_004421901.1| bacterial type II/III secretion system protein [Chlamydophila psittaci 6BC] gi|325507136|gb|ADZ18774.1| bacterial type II/III secretion system protein [Chlamydophila psittaci 6BC] gi|328815268|gb|EGF85256.1| bacterial type II and III secretion system family protein [Chlamydophila psittaci Cal10] gi|328914230|gb|AEB55063.1| general secretion pathway protein D, putative [Chlamydophila psittaci 6BC] Length = 885 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313 +L AL++ + P + A Q ASF G ++T S+ T T D G Sbjct: 665 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIG 724 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L TV + L+I+ +SE + P A T +++P G +V++G Sbjct: 725 VNLVVASTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLVMSGH 783 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 784 IRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 829 >gi|153827975|ref|ZP_01980642.1| VcsC2 [Vibrio cholerae 623-39] gi|148876556|gb|EDL74691.1| VcsC2 [Vibrio cholerae 623-39] Length = 467 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 6/212 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLD 252 D+V L IA + +Q+ F + S+ + F D S G D V + Sbjct: 239 DEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGIYDLVVPPFTE 298 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F HAL R + E L + Q F +S+ T D Sbjct: 299 TTDFLRNFHALTSNGIARGVYETNLLVLENQQGHFGKKQTATIALISNRQVETQKIEADN 358 Query: 313 GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 L+ T +L G + RIQ + + N+ P + ++ V + G TI+ Sbjct: 359 S--LYVTGRLLPSGDVQARIQYIEESLDDDKESDNSNRPPKVSSQSLNSEVYIKPGQTII 416 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 L G QQ+K GIP+LS IP+LG LF+++ Sbjct: 417 LGGFDNTVTQQMKSGIPVLSSIPLLGELFKST 448 >gi|167923433|ref|ZP_02510524.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei BCC215] Length = 319 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 158 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 214 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 215 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 270 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 271 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 319 >gi|217425129|ref|ZP_03456624.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] gi|217391734|gb|EEC31761.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] Length = 601 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|320102660|ref|YP_004178251.1| type II and III secretion system protein [Isosphaera pallida ATCC 43644] gi|319749942|gb|ADV61702.1| type II and III secretion system protein [Isosphaera pallida ATCC 43644] Length = 1626 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 41/69 (59%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P++ + +TTV +P GGT++L G+ + ++ + G+P+LSK P L LFRN R Sbjct: 1538 LPTFTLFTVNTTVTVPDGGTVLLGGVKTSEEERREFGVPVLSKTPYLNRLFRNIGIGRTS 1597 Query: 408 TEIFIAATP 416 I + TP Sbjct: 1598 RSIMMMVTP 1606 >gi|171915532|ref|ZP_02931002.1| fimbrial assembly protein [Verrucomicrobium spinosum DSM 4136] Length = 634 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 86/218 (39%), Gaps = 39/218 (17%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------- 295 G F+V GVL F+ VL L ++ I +A PTL SGQ A+ + Y Sbjct: 403 GAFAVSGVLTDPQFQGVLRGLNQSKGIDVMATPTLFTKSGQRAALKMVKEFRYPKEYDAP 462 Query: 296 KTVSSSTGA--------TSVTTHDYGVVLHFTPTV---------LSPGRI--------GL 330 +T + +TG S D G+V P + LSP + G Sbjct: 463 ETPTRTTGGGLGKPSSPRSFEKRDVGIVFEVEPVIGQNKVIELSLSPSFLEFEGFIDYGQ 522 Query: 331 RIQTEVSEPVIGV-------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 Q ++ + G N P +R + T V + G T+VL G + + + Sbjct: 523 DFQNSTTDRLTGQPVYFTVENQILQPIFRANRISTAVSIWDGCTVVLGGAAFEKRFRADD 582 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P++ +P++G F++ E T + T +V P Sbjct: 583 KVPVVGDLPLIGRTFQSKVKQVERTNVLFFVTARIVDP 620 >gi|53722615|ref|YP_111600.1| type III secretion system protein [Burkholderia pseudomallei K96243] gi|52213029|emb|CAH39067.1| putative type III secretion system protein [Burkholderia pseudomallei K96243] Length = 601 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|134281959|ref|ZP_01768665.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] gi|134246488|gb|EBA46576.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] Length = 601 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|126445193|ref|YP_001063243.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 668] gi|126224684|gb|ABN88189.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 668] Length = 601 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|320539812|ref|ZP_08039471.1| putative predicted fimbrial transporter [Serratia symbiotica str. Tucson] gi|320029998|gb|EFW12018.1| putative predicted fimbrial transporter [Serratia symbiotica str. Tucson] Length = 403 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 7/184 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-FGGKFVSEGGDFSVKGVLDR 253 QV L I + + L ++G + + P++ D F + S L R Sbjct: 183 QVQLASYIVTINSENLHELGVRWGLAADER-PAQPLRLDNFNVGLTQQKSTLSAGFHLAR 241 Query: 254 FS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 S L ALE+ + +A P L Q+AS G + Y+ S ++GATSV Sbjct: 242 LSGRLLNLELTALEQENRVEIIANPRLLTAHMQTASIKQGTEIPYEVSSGASGATSVEFK 301 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTI 368 + + + TP VL GRI L + + P V+ G+ + + K + T + + G TI Sbjct: 302 EAVLGMEVTPRVLPDGRITLTLYISQNMPGRSVSRGEGEALTIDKQEIKTQITVKDGETI 361 Query: 369 VLAG 372 VL G Sbjct: 362 VLGG 365 >gi|254185101|ref|ZP_04891690.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] gi|184215693|gb|EDU12674.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] Length = 601 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|260220229|emb|CBA27559.1| Fimbrial assembly protein pilQ [Curvibacter putative symbiont of Hydra magnipapillata] Length = 696 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 4/168 (2%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 DRF + ALE + ++ P + + Q + G L V+SS+GATS+ Sbjct: 526 DRF-LNLEISALEAEGKGKVVSSPRVVT-ADQIKALIEQGTELPYQVASSSGATSIAFRK 583 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + L P + G I L + +V++ +G + + + T V + +GGT+V+ Sbjct: 584 ANLKLEVLPQITPEGNIILTL--DVTKDTVGQSTPAGFAIDTKHVQTQVLVENGGTVVIG 641 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ + + +P +P LG LFRN + E+ + TP ++ Sbjct: 642 GIFTESSTDSETKVPFFGDLPGLGVLFRNRAKEITKREMLVFITPKVI 689 >gi|237508433|ref|ZP_04521148.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] gi|235000638|gb|EEP50062.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] Length = 601 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|254194240|ref|ZP_04900672.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei S13] gi|169650991|gb|EDS83684.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei S13] Length = 601 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 440 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 496 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 497 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 552 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 553 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|186477543|ref|YP_001859013.1| type IV pilus secretin PilQ [Burkholderia phymatum STM815] gi|184194002|gb|ACC71967.1| type IV pilus secretin PilQ [Burkholderia phymatum STM815] Length = 523 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 19/240 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS--------GPSKSFAADFGGKFVSEGGDFS 246 QV ++ I E + + +G + S+ G++ G D + VS G D + Sbjct: 287 QVLIEARIVEAEKGFSRNLGVKLSMIGTNEDGKATGLVGGKDGAILDLSARPVS-GFDAA 345 Query: 247 VKGVLDRFSFETV------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G L F+ + L ALE + ++ P + A G + Y+ Sbjct: 346 TMG-LTLFAAQATRLVNIELSALEAEGRGQIVSSPRVVTADRMKAVVEQGTELPYQ-AKV 403 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G + V + L P + GR+ L + +V++ +G P+ + T V Sbjct: 404 GQGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVAKDSVGEQTASGPAINTKHVQTRV 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 E+ GGT+ + G+ + D + +PLL KIP+LG FR+ +E+ + TP +V+ Sbjct: 462 EVEDGGTVSIGGIYETDGRDDVTRVPLLGKIPVLGVFFRHRAHRDLRSELVVFITPRVVQ 521 >gi|167615514|ref|ZP_02384149.1| type II/III secretion system protein [Burkholderia thailandensis Bt4] Length = 309 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 148 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 204 Query: 319 TPTVLSPG-RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ G R +++ + + + D +P + +T + G +++AG D Sbjct: 205 LPMVVEEGGRTQIKLDVRIVDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 264 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G+P+LSK+P+LGALFR++ +E TP +++P Sbjct: 265 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 309 >gi|171915470|ref|ZP_02930940.1| type II and III secretion system protein:NolW-like [Verrucomicrobium spinosum DSM 4136] Length = 896 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 94/198 (47%), Gaps = 19/198 (9%) Query: 234 FGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 FGG F + G +V G + + L LE+ L +PT+TA++ + A+ G Sbjct: 572 FGGIEDFAAPQG-LAVYGHIGKH-LNVFLRTLEQNKRFHVLQKPTVTALNHEEANIFIG- 628 Query: 292 QHL-------YKTVSSSTGATSVTTHDYGVV---LHFTPTVLSPGRIGLRIQTEVSEPVI 341 Q L ++ GA+ +T DY V L TP + + + L + + + V Sbjct: 629 QDLAIAGQTLTTGGTTVNGASVASTTDYVKVRLELRITPHIFANDEVRLDFE-QTNNDVS 687 Query: 342 G---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G ++ +P+ V+ T+ +P+ T++L GL+ + + K G+P L ++P+L LF Sbjct: 688 GFTEISGNRVPNLSVQGMRNTIIVPNRSTVLLGGLITERDSKNKNGLPFLVRVPVLKHLF 747 Query: 399 RNSRFNREETEIFIAATP 416 N+ ++E E+ I P Sbjct: 748 GNTSNSKERRELMIFVQP 765 >gi|162457505|ref|YP_001619872.1| general secretion pahtway protein D [Sorangium cellulosum 'So ce 56'] gi|161168087|emb|CAN99392.1| general secretion pahtway protein D [Sorangium cellulosum 'So ce 56'] Length = 864 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 5/114 (4%) Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGG 366 D G + P V ++ L + E+S+ P+ G G +P + R A TT+ + Sbjct: 618 QDVGTKIKVVPHVNDSDQVRLELSEEISDAGAPLEGA-LGAIPINK-RTASTTLVVRDQQ 675 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ GL++D + + IP+L IP+LG LFR + +T + + TP++++ Sbjct: 676 TVVIGGLMRDGMTTSETKIPVLGDIPVLGFLFRQRVKTKTKTNLLLVLTPYVIR 729 >gi|121593158|ref|YP_985054.1| type IV pilus secretin PilQ [Acidovorax sp. JS42] gi|120605238|gb|ABM40978.1| type IV pilus secretin PilQ [Acidovorax sp. JS42] Length = 696 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 11/203 (5%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSV---KGVLDRF-SFETVLHALERATAIRTLAEPT 276 GS P S A G VS G F++ RF S E L A+E + ++ P Sbjct: 494 GSGMSPFVSLPASLSG--VSTVGSFALSIFNSNASRFLSLE--LSAMEADGQGKIVSSPR 549 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L A G ++ Y +V++ GAT++ + L TP + G I L + +V Sbjct: 550 LITADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVTPQITPEGNIILDL--DV 606 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 ++ G + + T V + +GGT+V+ G+ + + + IP+L +P++G Sbjct: 607 NKDSRGETTTQGVAIDTKHVKTQVLIENGGTVVIGGIFEMEETNQENKIPVLGDVPVVGN 666 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LF+N + E+ + TP ++ Sbjct: 667 LFKNRTKESTKREMLVFITPKVI 689 >gi|167842291|ref|ZP_02468975.1| type III secretion system EscC protein [Burkholderia thailandensis MSMB43] Length = 508 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 23/234 (9%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + V I +V L +G S + G S SF + GG+ + G FS V + Sbjct: 285 VEISVAIIDVNAQDLSMLGVDWSASARIGGGSVSF--NSGGE--PDSGSFSTV-VSNTGQ 339 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYG 313 F L ALE+ + L+ P++ + A Y VS+ A S++T G Sbjct: 340 FMVRLSALEQNAKAQILSRPSVVTLDNMQAVLDRN-ITFYTKVSAERVAKLESIST---G 395 Query: 314 VVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRKADTTVELPSGG 366 +L TP V+ PG+ + + V + G G +P + T L G Sbjct: 396 SLLRVTPRVIGDPGKQEIMLTLMVQD---GRQTGALSKQEPLPQTLNSEIATHALLKEGQ 452 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET-EIF-IAATPFL 418 ++L G ++D++ + + IPLL IP+LG LF+ N+ T +F I A P+L Sbjct: 453 ALLLGGFVQDELSEGERKIPLLGDIPLLGNLFKMRHKNQRHTVRLFLIKAEPWL 506 >gi|299139665|ref|ZP_07032838.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] gi|298598289|gb|EFI54454.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] Length = 838 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 31/190 (16%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGA-------TSVTTH 310 ++AL + T R L P L A GQ A+ G + ++SS G T T Sbjct: 431 VNALLQDTNTRILQNPRLRATDGQKATLKIGQRVPIASGSLSSPVGGVSSLGVQTQFTYV 490 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVS------------EPVIGVNAGDMPSYRVRKADT 358 D G + TP V S G + L+++ EVS EPVIG + + Sbjct: 491 DVGTNMDITPAVHSDGSVSLKMKVEVSQVDTYDTISGVQEPVIGQ----------KVLEQ 540 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 T++L G +LAGL+ G P L ++P+L LF + EI P + Sbjct: 541 TIKLRDGEPSILAGLVTKQDSVAGSGTPGLGELPVLKYLFGTQTKTLQNDEIVFLLVPHI 600 Query: 419 VKPVAMRDLS 428 ++ ++ L+ Sbjct: 601 IRETLLQKLN 610 >gi|497225|gb|AAA74040.1| invG [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 563 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P +T+ SA F + K + A T Sbjct: 348 LDGSRFIAAVNALEEKKQATVVSAPGITSSGKCSAIFDNNRTFYTKLIGERNVALEHVT- 406 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 407 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 463 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 464 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 518 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 519 IVDPLTPDASESVNN 533 >gi|282899176|ref|ZP_06307153.1| pilQ(type II and III secretion system protein) [Cylindrospermopsis raciborskii CS-505] gi|281195931|gb|EFA70851.1| pilQ(type II and III secretion system protein) [Cylindrospermopsis raciborskii CS-505] Length = 522 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 41/61 (67%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T++L+G+++D + + +PLL IP+LGALFR++ +RE E+ + TP ++ Sbjct: 459 IRLRDGQTLLLSGIIQDQDRTVVTKVPLLGDIPLLGALFRSTNKDRERREVIVLLTPRII 518 Query: 420 K 420 + Sbjct: 519 E 519 >gi|317487416|ref|ZP_07946204.1| type IV pilus secretin PilQ [Bilophila wadsworthia 3_1_6] gi|316921348|gb|EFV42646.1| type IV pilus secretin PilQ [Bilophila wadsworthia 3_1_6] Length = 541 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/211 (23%), Positives = 94/211 (44%), Gaps = 8/211 (3%) Query: 216 QHSITGSSSGPSKS------FAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHALERATA 268 Q +TG +G S F D+ G ++ G + G + E L+ +E+ Sbjct: 297 QDPVTGGLTGTHGSGLGGAPFGLDYSGIASNDMGSLGFLFGKVGGSMLEVQLNLMEKDGN 356 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 I L+ P++T + + A +T G+ + +S+ G V D + L TP V+ + Sbjct: 357 INILSSPSITTLDNKMA-YTENGEKVPYVSTSNMGDREVKFEDAVLRLEMTPNVIDGDNL 415 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L++ + E + P ++ +TT+ + +G T+V++GL K+ + G+P L Sbjct: 416 KLKVLVKKDEVDTSRSVDGNPFIIKKQTETTLIMRNGETVVISGLTKEKGTDINAGVPGL 475 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP +F + + E+ I TP ++ Sbjct: 476 KDIPGGKYVFGHESKGKTMEEVLIFITPEIL 506 >gi|332184221|gb|AEE26475.1| Type IV pilus biogenesis protein PilQ [Francisella cf. novicida 3523] Length = 596 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 61/264 (23%), Positives = 114/264 (43%), Gaps = 29/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKF 238 K+V+N ++I DQV ++ I EV R ++GF + + S + +F ++ Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390 Query: 239 VSEGGDFSVKGVLDRF---------------SFETVLHALERATAIRTLAEPTLTAISGQ 283 G +D F + + ALE + +A P L + Q Sbjct: 391 GPTPGPTPTPTPVDTFVGTTAKLAYTIAGGVQLQMEIRALESESLAEEVASPHLVVANNQ 450 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 A F G+ + ++++GA +V + + L TP + G I + I V++ +G Sbjct: 451 VA-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGA 507 Query: 344 NAGDMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + G P + R+ T V G T+V+ G+ + ++ + IP L IP LG Sbjct: 508 SPGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGY 567 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 LF ++ +++E+ I TP +++ Sbjct: 568 LFSYTKITDQDSELLIFITPKIIQ 591 >gi|238763779|ref|ZP_04624738.1| Protein transporter HofQ [Yersinia kristensenii ATCC 33638] gi|238698081|gb|EEP90839.1| Protein transporter HofQ [Yersinia kristensenii ATCC 33638] Length = 425 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L Q+AS G Y G T++ + + + TP +L G+I L Sbjct: 297 IASPRLVTSHQQTASIKQGSDIPYTVSRGKKGTTTIEFKEAVLGMEVTPKILRNGKITLN 356 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P + + GD + + K + T + + G TIVL G+ + Q +P+L+ Sbjct: 357 LKISHNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETIVLGGIFQQKNSQGVNKVPMLA 416 Query: 390 KIPILG 395 IP LG Sbjct: 417 DIPWLG 422 >gi|227114133|ref|ZP_03827789.1| general secretion pathway protein D [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 684 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 34/208 (16%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ +L AL + + LA P++ + A+F T+ G ++++TV Sbjct: 446 NWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERK 505 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADT 358 T G+ L P + + L I+ EVS ++ ++ R + Sbjct: 506 T---------VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGATFNTRTVNN 556 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + + Sbjct: 557 AVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNLML-----F 611 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 ++P +RD S Y +K FN Sbjct: 612 IRPSIIRDRS----QYQSASASKYHSFN 635 >gi|153832481|ref|ZP_01985148.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio harveyi HY01] gi|148871276|gb|EDL70148.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio harveyi HY01] Length = 623 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 10/174 (5%) Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTS 289 D G V+ G + K +LD + +L LE + + ++ PTL A + Sbjct: 334 DVDGGDVTLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNN 393 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-----GRIGLRIQTEVSEPVIGVN 344 K + T A T YG +L P ++ I L + E + Sbjct: 394 SSTFYVKLIGRETAALEEVT--YGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGG 451 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 D+PS R + T + G ++++ G+ +D++ +PLL IP LGALF Sbjct: 452 VDDVPSIRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALF 505 >gi|254175910|ref|ZP_04882568.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|160696952|gb|EDP86922.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] Length = 599 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 438 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 494 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 495 LPMVVDEGGCTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 550 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 551 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599 >gi|330890299|gb|EGH22960.1| general secretion pathway protein D [Pseudomonas syringae pv. mori str. 301020] Length = 123 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 35/56 (62%) Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G +VL GLL+D Q E +P LS+IP+LG LFRN + +T + + P++++ Sbjct: 1 GQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIR 56 >gi|171909982|ref|ZP_02925452.1| general secretion pathway protein D [Verrucomicrobium spinosum DSM 4136] Length = 632 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 25/192 (13%) Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTA---------------ISGQSASFTSGGQHL 294 V D + ++HALE+ + + PT+ I + S T GQ + Sbjct: 342 VFDAMQVQAIVHALEQNGIVSQESCPTIITEDNEQGIISIVDRFPIVTTNVSQTDAGQTI 401 Query: 295 -----YKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVN 344 YK A + + GV L TPT+L G + ++++ V+ E V G N Sbjct: 402 TDEVRYKVDKDDPDAMEEPDKSREIGVTLTVTPTMLPDGTVRMKLRPRVAKIVELVQGNN 461 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P AD +P+G +++L G K +P+L +P+L LFR Sbjct: 462 GNVYPRVSESTADAISRIPAGQSLILGGFYDYSSSNNKNKVPVLGNVPVLKHLFRYKEKT 521 Query: 405 REETEIFIAATP 416 E+ + TP Sbjct: 522 MEKVSLVFIITP 533 >gi|254186924|ref|ZP_04893440.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|157934608|gb|EDO90278.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] Length = 599 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 438 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 494 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 495 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 550 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 551 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599 >gi|208779792|ref|ZP_03247136.1| type IV pilus secretin PilQ family protein, putative [Francisella novicida FTG] gi|208744247|gb|EDZ90547.1| type IV pilus secretin PilQ family protein, putative [Francisella novicida FTG] Length = 596 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 61/264 (23%), Positives = 114/264 (43%), Gaps = 29/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKF 238 K+V+N ++I DQV ++ I EV R ++GF + + S + +F ++ Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390 Query: 239 VSEGGDFSVKGVLDRF---------------SFETVLHALERATAIRTLAEPTLTAISGQ 283 G +D F + + ALE + +A P L + Q Sbjct: 391 GPTPGPTPTPTPVDTFVGTTAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQ 450 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 A F G+ + ++++GA +V + + L TP + G I + I V++ +G Sbjct: 451 VA-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGA 507 Query: 344 NAGDMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + G P + R+ T V G T+V+ G+ + ++ + IP L IP LG Sbjct: 508 SPGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGY 567 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 LF ++ +++E+ I TP +++ Sbjct: 568 LFSYTKITDQDSELLIFITPKIIE 591 >gi|167573369|ref|ZP_02366243.1| type II/III secretion system protein [Burkholderia oklahomensis C6786] Length = 607 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 446 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 502 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 503 LPMVVEEGGHTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 558 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P+LSK+P++GALFR++ TE TP +++P Sbjct: 559 YKVDSRSSTLSGVPVLSKLPLVGALFRSTDKQDSHTERLFLVTPRVIEP 607 >gi|332678440|gb|AEE87569.1| Type IV pilus biogenesis protein PilQ [Francisella cf. novicida Fx1] Length = 596 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 113/264 (42%), Gaps = 29/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKF 238 K+V+N ++I DQV ++ I EV R ++GF + + S + +F ++ Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390 Query: 239 VSEGGDFSVKGVLDRF---------------SFETVLHALERATAIRTLAEPTLTAISGQ 283 +D F + + ALE + +A P L + Q Sbjct: 391 TPTPTPTPTPTPVDTFVGTTAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQ 450 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 A F G+ + ++++GA +V + + L TP + G I + I V++ +G Sbjct: 451 VA-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVTPQIAPDGNIIMDIL--VTKNSVGA 507 Query: 344 NAGDMPS-------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + G P + R+ T V G T+V+ G+ + ++ + IP L IP LG Sbjct: 508 SPGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGY 567 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 LF ++ +++E+ I TP +++ Sbjct: 568 LFSYTKITDQDSELLIFITPKIIE 591 >gi|221069059|ref|ZP_03545164.1| type IV pilus secretin PilQ [Comamonas testosteroni KF-1] gi|220714082|gb|EED69450.1| type IV pilus secretin PilQ [Comamonas testosteroni KF-1] Length = 703 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 36/253 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGG----KFVSEGGDF-- 245 QV ++ I E R + +G + ++ ++S S F D G KF S G+F Sbjct: 451 QVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSGSGSSSKFPS--GNFVN 508 Query: 246 ---SVKGV--------------LDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASF 287 SV GV + RF S E L ALE + ++ P L A Sbjct: 509 LPASVAGVNTVGQVAFSVFNSSMTRFLSLE--LSALEAEGDGKIISNPRLVTADQNKALI 566 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G ++ Y +V++ GAT+++ + L TP + G I L + +V++ G Sbjct: 567 EQGTEYPY-SVTAPNGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQ 623 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + T V + +GGT+V+ G+ + ++ QL + +PL +P+LG LFR++ Sbjct: 624 GVAIDTKHIKTQVLVENGGTVVIGGIFEMEETNQLNK-VPLFGDLPVLGHLFRSNTKAST 682 Query: 407 ETEIFIAATPFLV 419 + E+ + TP ++ Sbjct: 683 KREMLVFITPKML 695 >gi|56708227|ref|YP_170123.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670698|ref|YP_667255.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis FSC198] gi|224457344|ref|ZP_03665817.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370714|ref|ZP_04986719.1| type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis FSC033] gi|254875049|ref|ZP_05247759.1| type IV pilus multimeric outer membrane protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604719|emb|CAG45789.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321031|emb|CAL09172.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis FSC198] gi|151568957|gb|EDN34611.1| type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis FSC033] gi|254841048|gb|EET19484.1| type IV pilus multimeric outer membrane protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159452|gb|ADA78843.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis NE061598] Length = 594 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 10/172 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 E + ALE + +A P L + Q A F G+ + ++++GA +V + + Sbjct: 421 LEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVAFQEAVLE 479 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-------YRVRKADTTVELPSGGTI 368 L TP + G I + I V++ +G + G P + R+ T V G T+ Sbjct: 480 LQVTPQIAPDGNIIMDIL--VTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTKDGDTV 537 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 V+ G+ + ++ + IP L IP LG LF ++ +++E+ I TP +++ Sbjct: 538 VIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKIIE 589 >gi|53716218|ref|YP_106182.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|124381659|ref|YP_001025783.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] gi|126446314|ref|YP_001077867.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|254201058|ref|ZP_04907423.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei FMH] gi|254205023|ref|ZP_04911376.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei JHU] gi|254359145|ref|ZP_04975417.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei 2002721280] gi|52422188|gb|AAU45758.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|126239168|gb|ABO02280.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|147748670|gb|EDK55745.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei FMH] gi|147754609|gb|EDK61673.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei JHU] gi|148028332|gb|EDK86292.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei 2002721280] gi|261826429|gb|ABM99750.2| type II/III secretion system protein [Burkholderia mallei NCTC 10229] Length = 599 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 438 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 494 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 495 LPMVVDEGGCTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 550 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 551 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599 >gi|299529630|ref|ZP_07043067.1| type IV pilus secretin PilQ [Comamonas testosteroni S44] gi|298722493|gb|EFI63413.1| type IV pilus secretin PilQ [Comamonas testosteroni S44] Length = 704 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 5/161 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P L A G ++ Y +V++ GAT+++ + L T Sbjct: 540 LSALEAEGDGKIISNPRLVTADQNKALIEQGTEYPY-SVTAPNGATTISFKKAVLKLEVT 598 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-DDI 378 P + G I L + +V++ G + + T V + +GGT+V+ G+ + ++ Sbjct: 599 PQITPEGDIILDL--DVNKDSRGETTTQGVAIDTKHVKTQVLVENGGTVVIGGIFELEET 656 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 QL + +PL +P+LG LFR++ + E+ + TP ++ Sbjct: 657 NQLNK-VPLFGDLPVLGHLFRSNTKASSKREMLVFITPKML 696 >gi|167587171|ref|ZP_02379559.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia ubonensis Bu] Length = 341 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE A RT A P +T + A + Q + +S S++T GV L Sbjct: 180 INALESANQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 236 Query: 319 TPTVLSPG-RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ G R +++ + + + D +P + +T + G +++AG D Sbjct: 237 LPMVVEEGGRTQIKLDVRIVDGELSRQTVDNIPVIVSTEINTQAFIEQGQALLIAGYKMD 296 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G+P+LSK+P++G LFR++ +E TP +++P Sbjct: 297 ARSSTQSGVPVLSKLPLIGGLFRSTDKEDSHSERLFLVTPRVIEP 341 >gi|126457187|ref|YP_001076198.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1106a] gi|242313849|ref|ZP_04812866.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] gi|126230955|gb|ABN94368.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106a] gi|242137088|gb|EES23491.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] Length = 599 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 438 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 494 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 495 LPMVVDEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 550 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 551 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599 >gi|325927911|ref|ZP_08189135.1| type IV pilus secretin PilQ/competence protein [Xanthomonas perforans 91-118] gi|325541751|gb|EGD13269.1| type IV pilus secretin PilQ/competence protein [Xanthomonas perforans 91-118] Length = 624 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 82/174 (47%), Gaps = 7/174 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--- 310 F+ + L AL++ ++ P + + + G + Y TV+ TG + T + Sbjct: 445 FNLDLELSALQQEGRGEVISNPRIVTSNQREGVIKQGREIGYVTVTGGTGGQAATPNVQF 504 Query: 311 -DYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + + L TPT+ + R+ L + + EV + + G +PS R+ +T V + G Sbjct: 505 KEVLLELKVTPTITNDNRVFLNMNVKKDEVDQLIELPLYGTVPSINRREINTAVLVDDGQ 564 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ G+ + + +P L +P LG LF++ + + E+ + TP +++ Sbjct: 565 TVVIGGVYEFTDRASVNKVPFLGDVPFLGNLFKSRGRQKSKAELLVFITPKVLR 618 >gi|264676808|ref|YP_003276714.1| type IV pilus secretin PilQ [Comamonas testosteroni CNB-2] gi|262207320|gb|ACY31418.1| type IV pilus secretin PilQ [Comamonas testosteroni CNB-2] Length = 704 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 19/210 (9%) Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV-----------LHALERATAIR 270 SSSG S F + G FV+ S + + +F L ALE + Sbjct: 494 SSSGASTKFPS---GNFVNLPASVSGVNTVGQVAFSVFNSSMTRFLSLELSALEAEGDGK 550 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ P L A G ++ Y +V++ GAT+++ + L TP + G I L Sbjct: 551 IISNPRLVTADQNKALIEQGTEYPY-SVTAPNGATTISFKKAVLKLEVTPQITPEGDIIL 609 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK-DDIQQLKEGIPLLS 389 + +V++ G + + T V + +GGT+V+ G+ + ++ QL + +PL Sbjct: 610 DL--DVNKDSRGETTTQGVAIDTKHVKTQVLVENGGTVVIGGIFELEETNQLNK-VPLFG 666 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+LG LFR++ + E+ + TP ++ Sbjct: 667 DLPVLGHLFRSNTKASSKREMLVFITPKML 696 >gi|121603587|ref|YP_980916.1| type IV pilus secretin PilQ [Polaromonas naphthalenivorans CJ2] gi|120592556|gb|ABM35995.1| type IV pilus secretin PilQ [Polaromonas naphthalenivorans CJ2] Length = 712 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+T +SS GATS+ + L T Sbjct: 549 LSALEADGKGKIVSSPRVVTADQTKALIEQGTEFPYQTATSS-GATSLAFRKANLKLEVT 607 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G I L + +V++ G + + T V + +GGT+V+ G+ + Sbjct: 608 PQITPEGNIILDL--DVNKDSRGETTAAGIAIDTKHIQTQVLVENGGTVVIGGIFTLEET 665 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL +P LG LF++ + E+ + TP ++ Sbjct: 666 NNEVKVPLLGDVPYLGNLFKSRERTSRKQEMLVFITPKMI 705 >gi|89898772|ref|YP_515882.1| type III secretion general secretion pathway protein D [Chlamydophila felis Fe/C-56] gi|89332144|dbj|BAE81737.1| type III secretion general secretion pathway protein D [Chlamydophila felis Fe/C-56] Length = 908 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313 +L AL++ + P + A Q ASF G ++T S+ T T D G Sbjct: 688 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIG 747 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 748 VNLVVASTIAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLVMSGH 806 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 807 IRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 852 >gi|326315788|ref|YP_004233460.1| type IV pilus secretin PilQ [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372624|gb|ADX44893.1| type IV pilus secretin PilQ [Acidovorax avenae subsp. avenae ATCC 19860] Length = 715 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E + ++ P L A G ++ Y +V++ GAT++ + L T Sbjct: 552 LSAMEADGQGKVVSSPRLITADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVT 610 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G I L + +V++ G + T V + +GGT+V+ G+ + + Sbjct: 611 PQITPEGNIILDL--DVNKDSKGETTTQGVAIDTNHVKTQVLVENGGTVVIGGIFRLEET 668 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + IPLL +P++G LF+N + E+ + TP ++ Sbjct: 669 NQENKIPLLGDVPVVGNLFKNRTRESTKREMLVFITPKVI 708 >gi|222109918|ref|YP_002552182.1| type IV pilus secretin pilq [Acidovorax ebreus TPSY] gi|221729362|gb|ACM32182.1| type IV pilus secretin PilQ [Acidovorax ebreus TPSY] Length = 696 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 11/203 (5%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSV---KGVLDRF-SFETVLHALERATAIRTLAEPT 276 GS P S A G VS G F++ RF S E L A+E + ++ P Sbjct: 494 GSGMSPFVSLPASLSG--VSTVGSFALSIFNSNASRFLSLE--LSAMEADGQGKIVSSPR 549 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L A G ++ Y +V++ GAT++ + L TP + G I L + +V Sbjct: 550 LITADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVTPQITPEGNIILDL--DV 606 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 ++ G + + + T V + +GGT+V+ G+ + + + IP+L +P++G Sbjct: 607 NKDSRGESTTQGVAIDTKHIKTQVLIENGGTVVIGGIFEMEETNQENKIPVLGDVPVVGN 666 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LF+N + E+ + TP ++ Sbjct: 667 LFKNRTKESTKREMLVFITPKVI 689 >gi|83717709|ref|YP_438974.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|83651534|gb|ABC35598.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 605 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 444 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 500 Query: 319 TPTVLSPG-RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ G R +++ + + + D +P + +T + G +++AG D Sbjct: 501 LPMVVEEGGRTQIKLDVRIVDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 560 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G+P+LSK+P+LGALFR++ +E TP +++P Sbjct: 561 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 605 >gi|227327883|ref|ZP_03831907.1| general secretion pathway protein D [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 684 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 30/191 (15%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ +L AL + + LA P++ + A+F T+ G ++++TV Sbjct: 446 NWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERK 505 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADT 358 T G+ L P + + L I+ EVS ++ ++ R + Sbjct: 506 T---------VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGATFNTRTVNN 556 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + + Sbjct: 557 AVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNLML-----F 611 Query: 419 VKPVAMRDLSR 429 ++P +RD S+ Sbjct: 612 IRPSIIRDRSQ 622 >gi|171463462|ref|YP_001797575.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193000|gb|ACB43961.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 509 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 3/157 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E+ + ++ ++ P + + + A G Q Y T + D + L T Sbjct: 352 LTAMEKLSLVKIISNPHVFTMDNEEAVVIDGVQIPYPVPGVGTNQITYEFKDAALKLTAT 411 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P+++ G + L + P + PS R+ + + + G V+ G+ + Sbjct: 412 PSIVGDGNLFLNMIVNKDSPNYSTSP---PSINKREVRSKLLIQDGTIAVIGGIYDQTKE 468 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 E +PLL IP+LG+LF +R ++T++ + P Sbjct: 469 NTVEKVPLLGSIPLLGSLFSYTRKADKKTQLLVFIAP 505 >gi|167577363|ref|ZP_02370237.1| type II/III secretion system protein [Burkholderia thailandensis TXDOH] Length = 605 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 444 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 500 Query: 319 TPTVLSPG-RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ G R +++ + + + D +P + +T + G +++AG D Sbjct: 501 LPMVVEEGGRTQIKLDVRIVDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 560 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G+P+LSK+P+LGALFR++ +E TP +++P Sbjct: 561 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 605 >gi|85704683|ref|ZP_01035785.1| general secretion pathway protein D [Roseovarius sp. 217] gi|85671091|gb|EAQ25950.1| general secretion pathway protein D [Roseovarius sp. 217] Length = 648 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 65/279 (23%), Positives = 108/279 (38%), Gaps = 35/279 (12%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAAD------------FGGKFV 239 DQV ++ I E+ + + FQ I G++ G FA G Sbjct: 324 DQVLIEAVIFELSVESFSDLSFQFGGVIDGATVG-GVEFALQGRPTLTSLVSTVLAGNAP 382 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + GG D+ L AL ++ + L+ P++ ++ + A + T S Sbjct: 383 TGGGTGGSIAAFDKSGIGGFLAALASKSSTKLLSTPSILTLNNREAEIVVAQNVPFVTGS 442 Query: 300 SSTGATS---------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 ST S + D G+ L TP + + L I EVS +A Sbjct: 443 FSTVGDSAVPNQPFQTIQRQDVGLTLTVTPQITRDKTVRLEINQEVSNLTNAASAAGGEI 502 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+ T V + G I+L GLL++ + + +P LS++P+LG LF+ N + + Sbjct: 503 TSKRELSTNVLVRDGHVIMLGGLLENGSGSVNQRVPGLSELPLLGRLFKGRSVNENQRIL 562 Query: 411 FIAATPF----------LVKPVAMRDLSRPDDHYSVEDD 439 + P L K +A R+ R D+ + DD Sbjct: 563 LVMLRPRILSSDEEARELTKRLA-REAKRAADYIAPADD 600 >gi|171320148|ref|ZP_02909212.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] gi|171094623|gb|EDT39673.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] Length = 615 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 454 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 510 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 511 LPMVVEEGGRTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 566 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + GIP+LSK+P++GALFR++ +E TP +++P Sbjct: 567 YKVDARSSTQSGIPVLSKLPLVGALFRSTDRQDGHSERLFLVTPRVIEP 615 >gi|29839808|ref|NP_828914.1| type III secretion protein SctC [Chlamydophila caviae GPIC] gi|29834155|gb|AAP04792.1| type III secretion protein SctC [Chlamydophila caviae GPIC] Length = 909 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313 +L AL++ + P + A Q ASF G ++T S+ T T D G Sbjct: 689 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIG 748 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L T+ + L+I+ +SE + P A T +++P G +V++G Sbjct: 749 VNLVVASTIAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLVMSGH 807 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 808 IRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 853 >gi|46447532|ref|YP_008897.1| putative protein of the general secretion pathway [Candidatus Protochlamydia amoebophila UWE25] gi|46401173|emb|CAF24622.1| putative protein of the general secretion pathway [Candidatus Protochlamydia amoebophila UWE25] Length = 829 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 37/72 (51%) Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P R V++P G TI+L GL + K+ IP L ++P LG LF + + Sbjct: 682 PDVTRRHITNQVQVPDGDTIILGGLRRKTTNDNKDSIPFLGELPGLGKLFSTNSLKDSSS 741 Query: 409 EIFIAATPFLVK 420 E+FI TP +VK Sbjct: 742 EMFIFITPHIVK 753 >gi|308274907|emb|CBX31506.1| hypothetical protein N47_E50180 [uncultured Desulfobacterium sp.] Length = 718 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 3/112 (2%) Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGT 367 D G++L P + + L I E+S G V P+ R T+V + T Sbjct: 500 DVGILLKIKPQINEGEYVKLDIYQEISAQKAGSENVITSIGPTMTKRSTKTSVAVKDKQT 559 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +V+ GL+++ ++ IPLL IP LG LF+ +R +T + + TP+++ Sbjct: 560 VVIGGLMQERDEESITKIPLLGDIPGLGWLFKYRSISRAKTNLLVFLTPYII 611 >gi|86607978|ref|YP_476740.1| type IV pilus secretin PilQ [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556520|gb|ABD01477.1| type IV pilus secretin PilQ, putative [Synechococcus sp. JA-2-3B'a(2-13)] Length = 696 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 11/120 (9%) Query: 310 HDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKAD------TTV 360 D GV+L + + G + L IQ E+S PV + GD + D + + Sbjct: 566 EDAGVILDVSEVRIDDNGFVTLTIQPEISIPVPSQILGGGDFAGILLFNIDRRQLQASQL 625 Query: 361 ELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G T ++AGL++D DI +++ +P L +P+LGALFR+ N E E+ TP+++ Sbjct: 626 RLRDGQTFIIAGLIQDRDIVDVQK-VPFLGDLPLLGALFRSQSVNNERNEVVFMLTPYIM 684 >gi|313683362|ref|YP_004061100.1| type ii and iii secretion system protein [Sulfuricurvum kujiense DSM 16994] gi|313156222|gb|ADR34900.1| type II and III secretion system protein [Sulfuricurvum kujiense DSM 16994] Length = 494 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 61/259 (23%), Positives = 105/259 (40%), Gaps = 49/259 (18%) Query: 195 QVTLKVTIAEVRRDILKQIG-----FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 QV ++ + E+ + IG F ++ GS + + S G DF+ G Sbjct: 236 QVMIEAHLIELTYNDYSSIGVNWSNFSLALNGSYTNSYNNIGT--AHPVYSFGIDFNPTG 293 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVS-------S 300 ++D L++ + L+ P + +S Q A G Q +LY+ S Sbjct: 294 LID---------FLKQYGDVEVLSNPKVLTLSNQPAIINVGKQLSYLYQNGSIIGTTSTP 344 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------------ 348 +T ++ + G+ L+ P V G I +RI PV D Sbjct: 345 TTVTNTLGSVFVGLTLNIIPEVSEDGYIIMRIN-----PVSSELLSDSELSSSSSQTSQT 399 Query: 349 -------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 P RV++ + V++ +++ GL++ + + +PLL IP+ G LF NS Sbjct: 400 QTDRVMPPDTRVKQMSSIVKVKDSQKVLIGGLIEKKNYKNQTKVPLLGDIPLFGKLFHNS 459 Query: 402 RFNREETEIFIAATPFLVK 420 ++E+FI TP LVK Sbjct: 460 TDTIRKSELFILITPILVK 478 >gi|21244106|ref|NP_643688.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str. 306] gi|21109733|gb|AAM38224.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str. 306] Length = 633 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 7/174 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTT 309 F+ + L A++ ++ P + + + G + Y T+S +V Sbjct: 454 FALDMELSAMQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGGGTGGQSQANVQF 513 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGG 366 + + L TPT+ + R+ L + + E +N G +P R+ +T V + G Sbjct: 514 KEVLLELKVTPTITNDNRVFLNMNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGE 573 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ G+ + + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 574 TVVIGGVYEFNDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 627 >gi|90410268|ref|ZP_01218284.1| general secretion pathway protein D precursor [Photobacterium profundum 3TCK] gi|90328509|gb|EAS44793.1| general secretion pathway protein D precursor [Photobacterium profundum 3TCK] Length = 406 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 24/186 (12%) Query: 224 SGPSKSFAADF-GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S P S F GG + + GD S ++ A+ + + L++P L + Sbjct: 219 SNPVSSIKESFKGGNIIYDKGDVS-----------ALVTAITQNQNTKLLSKPYLLVMDR 267 Query: 283 QSASFTSGGQ--HLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + S G L T +S+ G+ + + G+ L P +++ + QT S Sbjct: 268 EKGSINVGQNVPFLVSTETSNNGSLVQKIERQNVGLGLSVVPHIVNDSVVLGINQTSSS- 326 Query: 339 PVIGVNAGDMPSYRV---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V+ D+ S + R+ +T V++ G +I+L GL+ D+ ++ + G+PLL IP +G Sbjct: 327 ----VSDSDIASDIITNNREINTVVQVLDGQSIILGGLVSDESRKSESGVPLLKDIPWIG 382 Query: 396 ALFRNS 401 LFR + Sbjct: 383 GLFRTT 388 >gi|291086622|ref|ZP_06356285.2| type III secretion outer membrane pore, YscC/HrcC family [Citrobacter youngae ATCC 29220] gi|291067473|gb|EFE05582.1| type III secretion outer membrane pore, YscC/HrcC family [Citrobacter youngae ATCC 29220] Length = 505 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 33/247 (13%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKF----VSEGGDFS 246 +D + + V+I +V + L +G + G + + GG + ++ G DF Sbjct: 277 QDAIEITVSIIDVNAEDLGALGIDWAANADIGGMNLQLNTNLASGGGYATSVINNGSDFM 336 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 VK + ALE+ + + L++P++ ++ A K V + Sbjct: 337 VK-----------VSALEQKSQAKILSQPSVVTLNNVQAVLDKNTTFYTKLVGDKIAQLA 385 Query: 307 VTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359 T G ++ TP V+ + L IQ + V A D MP + + DT Sbjct: 386 SITS--GTLMQVTPRVVKDDEGTAEVLLLLSIQDGSQQQSSAVVAADAMPQVQNSEIDTQ 443 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFIAATPFL 418 L SG +++L G ++D + I KIPILG ++ + F +ET FL Sbjct: 444 ATLKSGQSLLLGGFIQD------QDIVTERKIPILGDIYWIGNFFKSKETTKIQTVRLFL 497 Query: 419 VKPVAMR 425 +K V ++ Sbjct: 498 IKAVPLK 504 >gi|15600233|ref|NP_253727.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa PAO1] gi|12230952|sp|P34750|PILQ_PSEAE RecName: Full=Fimbrial assembly protein pilQ; Flags: Precursor gi|9951330|gb|AAG08425.1|AE004917_4 Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa PAO1] Length = 714 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 5/205 (2%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 TG+S PS D G K + G + + D + L A+E+ +++P + Sbjct: 511 TGTSKSPSPFV--DLGAKDATSG--IGIGFITDNIILDLQLSAMEKTGNGEIVSQPKVVT 566 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 ++A G + Y+ SSS ATS + + + L TP + RI + ++ P Sbjct: 567 SDKETAKILKGSEVPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAP 625 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +P + + + + G TIV+ G+ ++ + E +P L ++P LG LFR Sbjct: 626 DYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLGELPYLGRLFR 685 Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424 + E+ + TP ++ A+ Sbjct: 686 RDTVTDRKNELLVFLTPRIMNNQAI 710 >gi|317050393|ref|YP_004111509.1| type II and III secretion system protein [Desulfurispirillum indicum S5] gi|316945477|gb|ADU64953.1| type II and III secretion system protein [Desulfurispirillum indicum S5] Length = 506 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 29/242 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-- 252 QV ++ I EV + +G + S+ GG F GGD + GV+ Sbjct: 261 QVLIEAQIFEVVLNDSHSLGIDWTNAFSAGSGVGIIGQATGGSFGLPGGDMAT-GVVQYT 319 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---SSTGA--TSV 307 R +F +L + A + L+ P + ++ Q+A +SG + T S G + Sbjct: 320 RNNFTGMLQVMRNAGNLEALSNPRIRVMNSQTAIISSGRITPFWTKRVDYSEVGGQINRI 379 Query: 308 TTHDY-----GVVLHFTPTVLSPGRIGLRI------------QTEVSEPVIGVNAGDMPS 350 T+D G+ + TP + G I L + QT+ S +I V+A P Sbjct: 380 ETYDRRDVLSGISMGVTPVIAPDGSILLTVIPVSTNFEEIDQQTDSSGDLI-VSA---PV 435 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +++A T + + +V+ GL+ ++ + + LS IP+LG LFR SR +E E+ Sbjct: 436 VNMKEAGTIIRVQDNDMVVIGGLISTSTRRETQEVSGLSAIPLLGHLFRGSRDVQERREL 495 Query: 411 FI 412 I Sbjct: 496 VI 497 >gi|257142080|ref|ZP_05590342.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 598 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 437 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 493 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 494 LPMVVEEGGRTQIKLDVRIVDGELSQQRVD----NIPVIVSNEINTQAFIEQGQALLIAG 549 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P+LGALFR++ +E TP +++P Sbjct: 550 YKVDARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 598 >gi|254448307|ref|ZP_05061769.1| general secretion pathway protein D [gamma proteobacterium HTCC5015] gi|198262174|gb|EDY86457.1| general secretion pathway protein D [gamma proteobacterium HTCC5015] Length = 694 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 13/212 (6%) Query: 214 GFQHSITGSSSGPS--KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 G + TG SG S F FG + S G F+ G+L + +T + L +I T Sbjct: 408 GIAAASTGDGSGASVPNGFTVGFGDRDNS-GNVFA--GILRAVASDTEANLLS-TPSIVT 463 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIG 329 L + GQ+ F +G Y T SS +V D GV L TP + I Sbjct: 464 LDNEEAEIVVGQNVPFVTGS---YTTASSGANNPFQTVERQDVGVTLKITPQINEGDVIR 520 Query: 330 LRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I Q S V +G + + + R+ T+V + G +VL GL+ D ++ +PLL Sbjct: 521 LDIEQEASSVVESSVASGQLITNK-REIKTSVMIEDGQMLVLGGLIDDQTRKSLFKVPLL 579 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+LG LF+ + ++ + + P +++ Sbjct: 580 GDIPLLGRLFQYRTNSNDKRNLMVFLHPKILR 611 >gi|149200051|ref|ZP_01877076.1| Peptidase M41, FtsH [Lentisphaera araneosa HTCC2155] gi|149136809|gb|EDM25237.1| Peptidase M41, FtsH [Lentisphaera araneosa HTCC2155] Length = 825 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 65/299 (21%), Positives = 120/299 (40%), Gaps = 64/299 (21%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----------QHSITGSSSGPSKSFA 231 + ++N LN G QV ++ + ++ + ++++GF H++TG + Sbjct: 509 QDIINNLN-TGAAQVNVEAKVVDITWNAMQELGFLWRWTGPRTPNHTLTGDRIFAQSNTP 567 Query: 232 ADFGGKF-----------VSEGGDFSVKG--VLDRFSFETVLHALERATAIRTLAEPTLT 278 A G +F S+ G + + + ++ AL+++ L P + Sbjct: 568 ASGGERFDNNIRGINEVVTSQEGPVQLAADLIFGNQELQMMIRALDQSDTNEILMAPNVL 627 Query: 279 AISGQSA--SFTSGGQHLYKT----VSSSTGATSVT-----THDYGVVLHFTPTV----- 322 SG++A + Q + + S+ST T D G VL TP V Sbjct: 628 TKSGETAVIRVVTSQQFVEEWEEGEFSNSTEIVPSTPTFGEEKDIGFVLSVTPEVDPNNT 687 Query: 323 -----LSPGRI-------GLRIQTEVSEPVIGVNAG----------DMPSYRVRKADTTV 360 ++P I L TE+ + +N MP + VR +T V Sbjct: 688 VITMEVNPEFIEFLGYDTDLNTSTELQ--LFDINGSPFTYQAEFIYSMPIFEVRSIETRV 745 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +L G T L GL+++++ + + IP +S IP +G LF+N E+ + + T L+ Sbjct: 746 KLWDGQTFTLGGLIRENVWTVDDSIPYISAIPFVGRLFQNKGEASEKRSLLMFITARLI 804 >gi|120609694|ref|YP_969372.1| type IV pilus secretin PilQ [Acidovorax citrulli AAC00-1] gi|120588158|gb|ABM31598.1| type IV pilus secretin PilQ [Acidovorax citrulli AAC00-1] Length = 715 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E + ++ P L A G ++ Y +V++ GAT++ + L T Sbjct: 552 LSAMEADGQGKVVSSPRLITADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVT 610 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G I L + +V++ G + T V + +GGT+V+ G+ + + Sbjct: 611 PQITPEGNIILDL--DVNKDSKGETTTQGVAIDTNHVKTQVLVENGGTVVIGGIFRLEET 668 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + IPLL +P++G LF+N + E+ + TP ++ Sbjct: 669 NQENKIPLLGDVPVVGNLFKNRTRESTKREMLVFITPKVI 708 >gi|116626816|ref|YP_828972.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116229978|gb|ABJ88687.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 752 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 99/240 (41%), Gaps = 20/240 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV + I EV + G + +GP S++ A G GG G L Sbjct: 491 QVLIDAKIYEVDLNGAFAAGVSAYLDKKDTGPFSRTLNAATGA-----GGLTLTTGALVL 545 Query: 254 FSFE--TVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLYKTVSSSTGA 304 S E L A E A+ + ++ P++ A A+ G Q + V SS + Sbjct: 546 RSHELLAALTASETASHSKVISAPSIIATDSVPATLNVGDDVPVLTSQAVAGGVQSSGSS 605 Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTT 359 +V+ GV L V S G + L + VS +P +A PS+ R T Sbjct: 606 VFTNTVSNRSTGVTLSIMARVNSSGIVTLIVNQNVSSPQPPPANSAIQSPSFSNRSFQTQ 665 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + G T+ + G++ + Q G+P L ++P +GA F + + TE+ + TP ++ Sbjct: 666 LTVQDGDTVAIGGIILESNLQSSAGVPFLHRLPGIGAAFGAKSYTKSRTELVVFLTPRVI 725 >gi|107104140|ref|ZP_01368058.1| hypothetical protein PaerPA_01005213 [Pseudomonas aeruginosa PACS2] Length = 714 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 5/205 (2%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 TG+S PS D G K + G + + D + L A+E+ +++P + Sbjct: 511 TGTSKSPSPFV--DLGAKDATSG--IGIGFITDNIILDLQLSAMEKTGNGEIVSQPKVVT 566 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 ++A G + Y+ SSS ATS + + + L TP + RI + ++ P Sbjct: 567 SDKETAKILKGSEVPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAP 625 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +P + + + + G TIV+ G+ ++ + E +P L ++P LG LFR Sbjct: 626 DYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLGELPYLGRLFR 685 Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424 + E+ + TP ++ A+ Sbjct: 686 RDTVTDRKNELLVFLTPRIMNNQAI 710 >gi|51593921|ref|YP_068488.1| yscC; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] gi|51591618|emb|CAF25422.1| yscC; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] Length = 607 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 11/226 (4%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 ++ + ++I ++ D L ++G + G +G + G + + ++ ++D Sbjct: 281 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDQSNIASNGALGSLIDAR 339 Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + +L + LE + + ++ PTL ++ ++A Y + + Sbjct: 340 GLDYLLARVNLLENEGSAQVVSRPTL--LTQENAQAVIDHHETYYVKVTGKEVAELKGIT 397 Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGT 367 YG +L TP VL+ G I L + E + D +P+ DT + G + Sbjct: 398 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDGIPTISRTVVDTVARVGHGQS 457 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412 +++ G+ +D++ +PLL IP LGALF R S R +FI Sbjct: 458 LIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFI 503 >gi|296314608|ref|ZP_06864549.1| type IV pilus secretin PilQ [Neisseria polysaccharea ATCC 43768] gi|296838653|gb|EFH22591.1| type IV pilus secretin PilQ [Neisseria polysaccharea ATCC 43768] Length = 505 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 25/255 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K+++ L++ + QV ++ I E + +G + TG A +G E Sbjct: 238 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFE 296 Query: 242 GGD-------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 GGD S+ + + L A E + +TLA P + + Sbjct: 297 GGDGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNR 356 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPV 340 + A SG + Y+ SSS ++S TT VL T P + G+I + ++ PV Sbjct: 357 KEAKIESGTEIPYQDTSSSGSSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPV 416 Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF- 398 V + + +T + +GGT+++ G+ +++ +PLL IP++G LF Sbjct: 417 DCTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFK 476 Query: 399 -RNSRFNREETEIFI 412 R NR E IFI Sbjct: 477 TRGKSTNRRELLIFI 491 >gi|162417759|ref|YP_001604484.1| type III secretion outer membrane pore YscC [Yersinia pestis Angola] gi|294496845|ref|YP_003560542.1| type III secretion outer membrane pore YscC [Yersinia pestis Z176003] gi|162354779|gb|ABX88726.1| type III secretion outer membrane pore YscC [Yersinia pestis Angola] gi|294352433|gb|ADE66490.1| type III secretion outer membrane pore YscC [Yersinia pestis Z176003] Length = 612 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 11/226 (4%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 ++ + ++I ++ D L ++G + G +G + G + + ++ ++D Sbjct: 286 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDQSNIASNGALGSLIDAR 344 Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + +L + LE + + ++ PTL ++ ++A Y + + Sbjct: 345 GLDYLLARVNLLENEGSAQVVSRPTL--LTQENAQAVIDHHETYYVKVTGKEVAELKGIT 402 Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGT 367 YG +L TP VL+ G I L + E + D +P+ DT + G + Sbjct: 403 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDGIPTISRTVVDTVARVGHGQS 462 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412 +++ G+ +D++ +PLL IP LGALF R S R +FI Sbjct: 463 LIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFI 508 >gi|197121137|ref|YP_002133088.1| general secretion pathway protein D [Anaeromyxobacter sp. K] gi|196170986|gb|ACG71959.1| general secretion pathway protein D [Anaeromyxobacter sp. K] Length = 904 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 97/240 (40%), Gaps = 40/240 (16%) Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 Q G +S+ SS+ F + G +E D + S ++ AL+ + + Sbjct: 532 QTGRVNSLDMSSAIALGGFLTGYTGPISAELKDLGFGNIP---SLGLLIQALQSNSDVNV 588 Query: 272 LAEPTLTAIS--------GQSASFTSG-----------GQHLYKTVSSSTGATSVTT--- 309 L+ P L A GQ+ F SG G TV S+ G +++ Sbjct: 589 LSTPHLLATDNEESEITVGQNVPFQSGYAPSGLSNLLSGSSATSTVGSALGTQGLSSLYA 648 Query: 310 ----HDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYRVRKADTTV 360 + + L P + G I L I+ + E P +G P+ R T + Sbjct: 649 PIQRQNVELKLKIKPQINEGGNIRLTIEEQTEEIAEKDPQLG------PTTAKRSVKTQI 702 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 TIV+ GL++D + IP L +PILG LFR++ +++ + + TP++++ Sbjct: 703 VARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFRDTTTTKQKVNLLLFLTPYIIR 762 >gi|107024260|ref|YP_622587.1| Type IV pilus secretin PilQ [Burkholderia cenocepacia AU 1054] gi|105894449|gb|ABF77614.1| Type IV pilus secretin PilQ [Burkholderia cenocepacia AU 1054] Length = 371 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 212 GSELPYQAKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPA 269 Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + T VE+ +GGT+ + G L ++D+ + +PLL KIP LGALFR+ + Sbjct: 270 IHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTR----VPLLGKIPFLGALFRHRAQRDQ 325 Query: 407 ETEIFIAATPFLV 419 E+ + TP +V Sbjct: 326 RNELVVFITPTVV 338 >gi|254374542|ref|ZP_04990023.1| type IV pilin multimeric outer membrane protein [Francisella novicida GA99-3548] gi|151572261|gb|EDN37915.1| type IV pilin multimeric outer membrane protein [Francisella novicida GA99-3548] Length = 594 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 10/168 (5%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + ALE + +A P L + Q A F G+ + ++++GA +V + + L T Sbjct: 425 IRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVT 483 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-------YRVRKADTTVELPSGGTIVLAG 372 P + G I + I V++ +G + G P + R+ T V G T+V+ G Sbjct: 484 PQIAPDGNIIMDIL--VTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGG 541 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + ++ + IP L IP LG LF ++ +++E+ I TP +++ Sbjct: 542 IYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKIIE 589 >gi|87306498|ref|ZP_01088645.1| general secretory pathway protein D-like [Blastopirellula marina DSM 3645] gi|87290677|gb|EAQ82564.1| general secretory pathway protein D-like [Blastopirellula marina DSM 3645] Length = 1313 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 41/71 (57%) Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + TTV +P GGT++L G+ + ++ + G+P++SK+P + LFRN R Sbjct: 1227 PEFSIITVTTTVSVPDGGTVLLGGIKRLSEERREAGVPIVSKLPYINRLFRNVGIGRSTQ 1286 Query: 409 EIFIAATPFLV 419 + + TP ++ Sbjct: 1287 SLMMMVTPRII 1297 >gi|118497727|ref|YP_898777.1| Type IV pili secretin component [Francisella tularensis subsp. novicida U112] gi|194323699|ref|ZP_03057475.1| type IV pilus secretin PilQ family protein, putative [Francisella tularensis subsp. novicida FTE] gi|82453010|gb|ABB76143.1| PilQ [Francisella novicida] gi|118423633|gb|ABK90023.1| Type IV pili secretin component [Francisella novicida U112] gi|194322063|gb|EDX19545.1| type IV pilus secretin PilQ family protein, putative [Francisella tularensis subsp. novicida FTE] Length = 594 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 10/168 (5%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + ALE + +A P L + Q A F G+ + ++++GA +V + + L T Sbjct: 425 IRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVAFQEAVLELQVT 483 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-------YRVRKADTTVELPSGGTIVLAG 372 P + G I + I V++ +G + G P + R+ T V G T+V+ G Sbjct: 484 PQIAPDGNIIMDIL--VTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGG 541 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + ++ + IP L IP LG LF ++ +++E+ I TP +++ Sbjct: 542 IYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKIIE 589 >gi|54294209|ref|YP_126624.1| type II protein secretion LspD [Legionella pneumophila str. Lens] gi|53754041|emb|CAH15514.1| type II protein secretion LspD [Legionella pneumophila str. Lens] Length = 791 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 109/257 (42%), Gaps = 29/257 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K V++ L+I Q+ ++ +AEV + +G + + +G K F F Sbjct: 490 KTVISQLDIKPA-QLLIEALVAEVDEKDVNNLGIEWG-SNQQTGNPKDFRPGFA------ 541 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299 + K +D F+ ++AL R L+ P++ + + A G Q T S Sbjct: 542 --IINSKTRID--DFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597 Query: 300 ----SSTGATSVTTHD-YGVVLHF--TPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPS 350 +T A+ TT D V LH P + I L+I + +P Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATSTTDNTTTP 657 Query: 351 -YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ Sbjct: 658 TFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRV 717 Query: 410 IFIAATPFLVKPVAMRD 426 + + +KP+ +R+ Sbjct: 718 LMV-----FIKPIILRN 729 >gi|115380040|ref|ZP_01467087.1| general secretion pathway protein D [Stigmatella aurantiaca DW4/3-1] gi|310820456|ref|YP_003952814.1| general secretion pathway protein D [Stigmatella aurantiaca DW4/3-1] gi|115362957|gb|EAU62145.1| general secretion pathway protein D [Stigmatella aurantiaca DW4/3-1] gi|309393528|gb|ADO70987.1| General secretion pathway protein D [Stigmatella aurantiaca DW4/3-1] Length = 850 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 46/226 (20%) Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 F A G + E + + D +F VLHAL++ + + L+ P L + A T Sbjct: 495 FLAGLQGPVIPELKNLGI----DVPAFGVVLHALQQNSDVNVLSTPHLLTSDNEEAEITV 550 Query: 290 GGQHLYKTVSSSTGA------------------------------TSVTTHDYGVVLHFT 319 G Q++ S G+ +T + + L Sbjct: 551 G-QNVPFQAGFSPGSLGGTIGGIGGVTGGTNTGLSSALLGLGSSFAPITRQNVELKLTVK 609 Query: 320 PTVLSPGRIGLRI--QTE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 P + I + I QTE S+PV+G P+ R A TTV T+V+ G++ Sbjct: 610 PQINESDFIRMVITEQTEEIASSDPVLG------PTTSKRSAKTTVVAKDQETVVIGGIM 663 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +D + +P+L IP+LG LFR + + +T + + TP++++ Sbjct: 664 QDRTIESVSKVPILGDIPLLGHLFRETTRRKTKTNLLLFLTPYIIR 709 >gi|186897497|ref|YP_001874608.1| YscC/HrcC family type III secretion outer membrane protein [Yersinia pseudotuberculosis PB1/+] gi|186700523|gb|ACC91151.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pseudotuberculosis PB1/+] Length = 607 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 11/226 (4%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 ++ + ++I ++ D L ++G + G +G + G + + ++ ++D Sbjct: 281 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDKSNIASNGALGSLIDAR 339 Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + +L + LE + + ++ PTL ++ ++A Y + + Sbjct: 340 GLDYLLARVNLLENEGSAQVVSRPTL--LTQENAQAVIDHHETYYVKVTGKEVAELKGIT 397 Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGT 367 YG +L TP VL+ G I L + E + D +P+ DT + G + Sbjct: 398 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDGIPTISRTVVDTVARVGHGQS 457 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412 +++ G+ +D++ +PLL IP LGALF R S R +FI Sbjct: 458 LIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFI 503 >gi|16082740|ref|NP_395186.1| outer membrane secretin precursor [Yersinia pestis CO92] gi|31795269|ref|NP_857730.1| outer membrane secretin precursor [Yersinia pestis KIM] gi|31795473|ref|NP_857925.1| outer membrane secretin precursor [Yersinia pestis KIM] gi|45478532|ref|NP_995359.1| putative type III secretion protein YscC [Yersinia pestis biovar Microtus str. 91001] gi|108793654|ref|YP_636804.1| type III secretion protein [Yersinia pestis Antiqua] gi|145597132|ref|YP_001154596.1| type III secretion protein [Yersinia pestis Pestoides F] gi|149192687|ref|YP_001293919.1| Type III secretion outer membrane pore protein [Yersinia pestis CA88-4125] gi|165927821|ref|ZP_02223653.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. F1991016] gi|165940102|ref|ZP_02228636.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. IP275] gi|166011759|ref|ZP_02232657.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. E1979001] gi|166214450|ref|ZP_02240485.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. B42003004] gi|167401969|ref|ZP_02307455.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422893|ref|ZP_02314646.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426864|ref|ZP_02318617.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229896868|ref|ZP_04512028.1| Type III secretion outer membrane pore protein [Yersinia pestis Pestoides A] gi|229900223|ref|ZP_04515359.1| Type III secretion outer membrane pore protein [Yersinia pestis biovar Orientalis str. India 195] gi|270491097|ref|ZP_06208169.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis KIM D27] gi|322836578|ref|YP_004210074.1| type III secretion outer membrane pore YscC [Yersinia pestis Java 9] gi|155446|gb|AAA27638.1| KIM5 [Yersinia pestis] gi|2996229|gb|AAC62552.1| Yop proteins translocation protein C homolog [Yersinia pestis KIM 10] gi|3822061|gb|AAC69781.1| type III secretion protein [Yersinia pestis KIM 10] gi|5832472|emb|CAB54929.1| putative type III secretion protein [Yersinia pestis CO92] gi|45357154|gb|AAS58550.1| putative type III secretion protein YscC [Yersinia pestis biovar Microtus str. 91001] gi|108782201|gb|ABG16256.1| type III secretion protein [Yersinia pestis Antiqua] gi|145212900|gb|ABP42306.1| type III secretion protein [Yersinia pestis Pestoides F] gi|148872345|gb|ABR14835.1| Type III secretion outer membrane pore protein [Yersinia pestis CA88-4125] gi|165912012|gb|EDR30655.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. IP275] gi|165920257|gb|EDR37558.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. F1991016] gi|165989366|gb|EDR41667.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. E1979001] gi|166204343|gb|EDR48823.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. B42003004] gi|166958183|gb|EDR55204.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048697|gb|EDR60105.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054163|gb|EDR63990.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229686743|gb|EEO78823.1| Type III secretion outer membrane pore protein [Yersinia pestis biovar Orientalis str. India 195] gi|229700139|gb|EEO88178.1| Type III secretion outer membrane pore protein [Yersinia pestis Pestoides A] gi|262364013|gb|ACY64350.1| outer membrane secretin precursor [Yersinia pestis D182038] gi|270334840|gb|EFA45619.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis KIM D27] gi|317374471|gb|ADV16646.1| type III secretion outermembrane pore forming protein [Yersinia pestis] gi|321161352|gb|ADW67058.1| type III secretion outer membrane pore YscC [Yersinia pestis Java 9] Length = 607 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 11/226 (4%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 ++ + ++I ++ D L ++G + G +G + G + + ++ ++D Sbjct: 281 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDQSNIASNGALGSLIDAR 339 Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + +L + LE + + ++ PTL ++ ++A Y + + Sbjct: 340 GLDYLLARVNLLENEGSAQVVSRPTL--LTQENAQAVIDHHETYYVKVTGKEVAELKGIT 397 Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGT 367 YG +L TP VL+ G I L + E + D +P+ DT + G + Sbjct: 398 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDGIPTISRTVVDTVARVGHGQS 457 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412 +++ G+ +D++ +PLL IP LGALF R S R +FI Sbjct: 458 LIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFI 503 >gi|90412668|ref|ZP_01220670.1| putative type II secretory pathway, component EpsD [Photobacterium profundum 3TCK] gi|90326476|gb|EAS42888.1| putative type II secretory pathway, component EpsD [Photobacterium profundum 3TCK] Length = 406 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 24/186 (12%) Query: 224 SGPSKSFAADF-GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S P S F GG + + GD S ++ A+ + + L++P L + Sbjct: 219 SNPVASIKESFKGGNIIYDKGDVS-----------ALVTAITQNQNTKLLSKPYLLVMDR 267 Query: 283 QSASFTSGGQ--HLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + + G L T +S+ G+ + + G+ L P +++ + QT S Sbjct: 268 EKGAINVGQNVPFLVSTETSNNGSLVQKIERQNVGLGLSVVPHIVNDSVVLAINQTSSS- 326 Query: 339 PVIGVNAGDMPSYRV---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V+ D+ S + R+ +T V++ G +I+L GL+ D+ ++ + G+PLL IP +G Sbjct: 327 ----VSDSDIASDIITNNREINTVVQVLDGQSIILGGLVSDESRKSESGVPLLKDIPWIG 382 Query: 396 ALFRNS 401 LFR + Sbjct: 383 GLFRTT 388 >gi|313202169|ref|YP_004040827.1| type IV pilus secretin pilq [Methylovorus sp. MP688] gi|312441485|gb|ADQ85591.1| type IV pilus secretin PilQ [Methylovorus sp. MP688] Length = 714 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 3/147 (2%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + ++ P +T + + A G + Y SSS GATSV D + L TP V +I Sbjct: 561 KVVSSPRVTTANQKKAQIQQGTKIPYLRASSS-GATSVQFVDATLSLEVTPQVTPDDKII 619 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + + + +G +PS + DT V + +G T VL G+ + + + +P Sbjct: 620 MDL--TIKKDRVGQIFSGVPSIETQSVDTQVLVSNGETAVLGGIYEQTERNDVDKVPFFG 677 Query: 390 KIPILGALFRNSRFNREETEIFIAATP 416 +P +G F+ ++TE+ I TP Sbjct: 678 DLPFVGNAFKRRVRQNDKTELLIFITP 704 >gi|28373014|ref|NP_783687.1| hypothetical protein pYVa12790_p34 [Yersinia enterocolitica] gi|32470300|ref|NP_863535.1| hypothetical protein pYVe8081_p30 [Yersinia enterocolitica] gi|122815824|ref|YP_001004090.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|14579358|gb|AAK69235.1|AF336309_30 YscC [Yersinia enterocolitica] gi|23630586|gb|AAN37542.1| YscC [Yersinia enterocolitica] gi|121663698|emb|CAL10060.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 607 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 13/227 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 ++ + ++I ++ D L ++G + G +G + G + + ++ ++D Sbjct: 281 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDQSNIASNGALGSLIDAR 339 Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + +L + LE + + ++ PTL A + K T Sbjct: 340 GLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSETYYVKVTGKEVAELKGIT-- 397 Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG +L TP VL+ G + L I+ +P G +P+ DT + G Sbjct: 398 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEG-IPTISRTVVDTVARVGHGQ 456 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412 ++++ G+ +D++ +PLL IP LGALF R S R +FI Sbjct: 457 SLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFI 503 >gi|238752349|ref|ZP_04613827.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia rohdei ATCC 43380] gi|238709390|gb|EEQ01630.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia rohdei ATCC 43380] Length = 486 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 21/240 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-DR 253 Q+ + VTI +V + Q+G S + S G SF + +++G V+ D Sbjct: 260 QIEISVTIIDVDAGDISQLGIDWSASTSIGGMGISF-----NRGLAKGNSDGFSTVIGDT 314 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +F L+AL++ + R L+ P++ ++ A K T G Sbjct: 315 GNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKLQGDKVAKLESVTS--G 372 Query: 314 VVLHFTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 +L TP ++ + L IQ + + V +++ +P + T L G ++ Sbjct: 373 SLLRVTPRMIDADGVKEVLLNLNIQ-DGQQQVSLISSEPLPQIQNSDISTQATLRVGQSL 431 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK--PVAMRD 426 +L G ++D + + IPLL IP+LG LFR++ E + FL+K PV R+ Sbjct: 432 LLGGFIQDKQIESQNKIPLLGDIPLLGGLFRST-----EKQSHSVVRLFLIKAVPVDARE 486 >gi|296120909|ref|YP_003628687.1| hypothetical protein Plim_0641 [Planctomyces limnophilus DSM 3776] gi|296013249|gb|ADG66488.1| hypothetical protein Plim_0641 [Planctomyces limnophilus DSM 3776] Length = 1566 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 10/67 (14%) Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKE-----GIPLLSKIPILGALFRNSRFNREETEIFI 412 TTV +P GGT++L G +++L+E G+P+L+KIP + LF+NS RE + + Sbjct: 1491 TTVSVPDGGTVLLGG-----VKRLREGRNMAGVPILNKIPYVSRLFKNSGVGRETESLML 1545 Query: 413 AATPFLV 419 TP +V Sbjct: 1546 MVTPRIV 1552 >gi|126666716|ref|ZP_01737693.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter sp. ELB17] gi|126628761|gb|EAZ99381.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter sp. ELB17] Length = 705 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 18/200 (9%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S + SFA F GGDF V + L ALE +++P + Sbjct: 519 GVSGDGASSFAVGF------SGGDFLV---------DLELSALESDGKAEIVSQPRVVTA 563 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 Q+AS SG + ++ SSS ATS + + + L TP + +I + + EV++ Sbjct: 564 DRQTASIKSGQEIPFQEASSSG-ATSTSFKEAVLSLEVTPQITPDDKIIMDL--EVTQDS 620 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G + + P+ T V + +G TIVL G+ + + P L IP LG LF+ Sbjct: 621 RGEDTPNGPAINTNSVTTQVLVANGETIVLGGIFESTNTETTTKTPFLGDIPYLGRLFKR 680 Query: 401 SRFNREETEIFIAATPFLVK 420 ++ +E+ I TP ++K Sbjct: 681 TQTTELRSELLIFITPKIIK 700 >gi|310923243|emb|CBW54709.1| YscC, T3SS outer membrane ring component, local similarity to E.coli GspD (T2SS) and to iron transporters,PMID 9427408 [Yersinia enterocolitica (type O:8)] Length = 607 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 13/227 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 ++ + ++I ++ D L ++G + G +G + G + + ++ ++D Sbjct: 281 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDQSNIASNGALGSLIDAR 339 Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + +L + LE + + ++ PTL A + K T Sbjct: 340 GLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSETYYVKVTGKEVAELKGIT-- 397 Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG +L TP VL+ G + L I+ +P G +P+ DT + G Sbjct: 398 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEG-IPTISRTVVDTVARVGHGQ 456 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412 ++++ G+ +D++ +PLL IP LGALF R S R +FI Sbjct: 457 SLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFI 503 >gi|238757842|ref|ZP_04619024.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia aldovae ATCC 35236] gi|238703827|gb|EEP96362.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia aldovae ATCC 35236] Length = 484 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 22/232 (9%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + VTI +V + Q+G S S G + SF G + GG FS + + S Sbjct: 256 IEISVTIIDVDAGDISQLGIDWSAAVSMGGGTLSF----NGPDSNTGGGFSTV-ISNTPS 310 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTHDYGV 314 F L ALE+ + L++P++ ++ A K S+TT G Sbjct: 311 FMARLVALEKNSHAYILSQPSVVTLNNIQAVLDKNITFYTKLEGDKVAKLESITT---GS 367 Query: 315 VLHFTPTVLS-PGR----IGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 +L TP +L G+ + L IQ + + P+ + +P + + + L +G ++ Sbjct: 368 LLRVTPRLLEDKGKQNIMLSLNIQDGQQNAPI--SQSEPLPQVQNSEIASQATLQAGQSL 425 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +L G +D Q++ IPLL IPI+G LFR S N+ + I + FL+K Sbjct: 426 LLGGFKQDKQVQVQNKIPLLGDIPIIGHLFR-SDINQTNSVIRL----FLIK 472 >gi|238025976|ref|YP_002910207.1| type II/III secretion system protein [Burkholderia glumae BGR1] gi|237875170|gb|ACR27503.1| Type II/III secretion system protein [Burkholderia glumae BGR1] Length = 649 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE R ++ P + + ++ + G L G + V + L Sbjct: 472 LSALEAQGRGRIVSSPRIV-TADRAPALIEQGTELPYQAKVGLGVSGVQFRRATLKLEVE 530 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G + L + +V++ +G + P+ + T VE+ +GGT+ + G+ + D + Sbjct: 531 PQITPEGHVVLDL--DVAKDSVGESTDAGPAIHTKHVRTRVEIENGGTVSIGGIYESDRR 588 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+L KIP+LGALFR+ + E+ + TP +V Sbjct: 589 DDVTRVPVLGKIPMLGALFRHRARRQRTAELVVYITPRVV 628 >gi|258406319|ref|YP_003199061.1| type IV pilus secretin PilQ [Desulfohalobium retbaense DSM 5692] gi|257798546|gb|ACV69483.1| type IV pilus secretin PilQ [Desulfohalobium retbaense DSM 5692] Length = 719 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/199 (23%), Positives = 83/199 (41%), Gaps = 12/199 (6%) Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDR------FSFETVLHALERATAIRTLAEPTLTAIS 281 KS +A F E +++G LD+ F + L E +T++ P L ++ Sbjct: 527 KSLSAGVLQGFTPEVSTVNMQGALDKISGIDLFELDAQLKLGELKGVTKTISSPRLVTLN 586 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 Q A S G + S +G T + + + L P + ++ L + P Sbjct: 587 NQQAEI-SQGIKIANESESESGGTDIEYTEATLKLAVQPQITPDDKVILDLDIADDSPT- 644 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 N D+ + R A T + + + T+VL G+ + K +P L +P+LG LF+ Sbjct: 645 -ENGEDIET---RTARTKLLVENQETVVLGGVYQVIENNEKNQVPGLGDVPLLGWLFKTD 700 Query: 402 RFNREETEIFIAATPFLVK 420 N E E+ I P +++ Sbjct: 701 NVNNENRELLIFIRPTILE 719 >gi|294667368|ref|ZP_06732586.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602809|gb|EFF46242.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 648 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 7/174 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTT 309 F+ + L A++ ++ P + + + G + Y T+S +V Sbjct: 469 FNLDIELSAMQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGGGTGGQSQANVQF 528 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGG 366 + + L TPT+ + R+ L + + E +N G +P R+ +T V + G Sbjct: 529 KEVLLELKVTPTITNDNRVFLNMNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGE 588 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ G+ + + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 589 TVVIGGVYEFNDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642 >gi|171909907|ref|ZP_02925377.1| Type II secretory pathway component, protein D [Verrucomicrobium spinosum DSM 4136] Length = 665 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 14/187 (7%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTS-------GGQHLYKTVSSSTGATSVTTHDY 312 L A+ + RT++ P + + + S GG + ST +S++ Sbjct: 369 LRAMLKDQETRTVSYPRMVTTNNREVVIRSVVNQPVLGGSASTSLGTGSTTTSSISYLPI 428 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIV 369 G V++ P + +I L + VS +IG + P R VEL +G T+ Sbjct: 429 GTVINILPKRMMDDKINLNLAITVSS-IIGTEVIQGNPYPVASSRVYSAPVELNNGYTVA 487 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + GL + Q+ ++GIP+L KIPILG F+ + + I TP L+ +RD Sbjct: 488 VGGLDEAREQEGEQGIPVLGKIPILGYAFKTKGKAKNHKNLMIFITPSLID---VRDGGL 544 Query: 430 PDDHYSV 436 P+ SV Sbjct: 545 PEKPQSV 551 >gi|284006883|emb|CBA72151.1| type III secretion component protein SctC [Arsenophonus nasoniae] Length = 598 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 9/119 (7%) Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365 YG +L TP V+ G + L I+ +P GV+ +P+ DT + G Sbjct: 392 YGTLLQMTPRVIQIGDKPEIHLVLHIEDGNQKPNSSGVDG--IPTINRTIIDTVARVEQG 449 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN-SRFNREETEIFIAATPFLVKPVA 423 ++V+ G+ +D++ + +PLL IP+LGALFR+ S R IFI + K +A Sbjct: 450 QSLVIGGIFRDEVIKTSRKVPLLGDIPLLGALFRSQSNQTRRVVRIFIVEPKIIDKGLA 508 >gi|197286852|ref|YP_002152724.1| hypothetical protein PMI3025 [Proteus mirabilis HI4320] gi|227354961|ref|ZP_03839372.1| competence protein E [Proteus mirabilis ATCC 29906] gi|194684339|emb|CAR45956.1| putative exported protein [Proteus mirabilis HI4320] gi|227164748|gb|EEI49595.1| competence protein E [Proteus mirabilis ATCC 29906] Length = 371 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 4/150 (2%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P LTA ++AS G + Y VS V + + + TP + +I L Sbjct: 224 IASPRLTAAHEKTASIKQGTEIPY--VSRDNDTIRVEFKEAVLGMEVTPIIQRSNKIRLL 281 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P I + G + K + T V + G T++L G+ + QQ IP LS Sbjct: 282 LKISQNTPGIALVQGGSEHLSIDKQEIMTEVTIHDGETLMLGGIFQQKQQQHAAKIPFLS 341 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+LG LF + R E+ I TP L+ Sbjct: 342 SLPLLGILFSHKRDQHSRHELVIFITPKLI 371 >gi|71082769|ref|YP_265488.1| type II secretion PilQ [Candidatus Pelagibacter ubique HTCC1062] gi|71061882|gb|AAZ20885.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1062] Length = 518 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 11/159 (6%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L LE +T++ P L + Q AS G +T+ G D + L T Sbjct: 366 LDFLEAQGLSKTVSNPKLFTLDNQQASINQG-----ETIYIDGGEGEDKPVDASLKLIVT 420 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL--PSGGTIVLAGLLKDD 377 P ++ G + L IQ P N + S V K + +L G +V+ G+ K++ Sbjct: 421 PNIIGDGNVMLSIQVNNDTP----NRANAASVGVNKMEINTKLLVADGDIVVIGGIKKNN 476 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + ++G+P SK+PILG + + E+ + P Sbjct: 477 VANNRQGVPGTSKVPILGKVLSGKSNSDTMNELLVFIAP 515 >gi|78064965|ref|YP_367734.1| type II and III secretion system protein [Burkholderia sp. 383] gi|77965710|gb|ABB07090.1| type II and III secretion system protein [Burkholderia sp. 383] Length = 543 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 12/106 (11%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG--- 372 L P + GR+ L + +V++ IG P+ + T VE+ +GGT+ + G Sbjct: 409 LEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYE 466 Query: 373 -LLKDDIQQLKEGIPLLSKIPILGALFRN--SRFNREETEIFIAAT 415 L ++D+ + +PLL KIP LGALFR+ R R E +FI T Sbjct: 467 QLNRNDVTR----VPLLGKIPFLGALFRHRAQRDQRNELVVFITPT 508 >gi|91762809|ref|ZP_01264774.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1002] gi|91718611|gb|EAS85261.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1002] Length = 518 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 11/159 (6%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L LE +T++ P L + Q AS G +T+ G D + L T Sbjct: 366 LDFLEAQGLSKTVSNPKLFTLDNQQASINQG-----ETIYIDGGEGEDKPVDASLKLIVT 420 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL--PSGGTIVLAGLLKDD 377 P ++ G + L IQ P N + S V K + +L G +V+ G+ K++ Sbjct: 421 PNIIGDGNVMLSIQVNNDTP----NRANAASVGVNKMEINTKLLVADGDIVVIGGIKKNN 476 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + ++G+P SK+PILG + + E+ + P Sbjct: 477 VANNRQGVPGTSKVPILGKVLSGKSNSDTMNELLVFIAP 515 >gi|325917654|ref|ZP_08179848.1| type IV pilus secretin PilQ/competence protein [Xanthomonas vesicatoria ATCC 35937] gi|325536118|gb|EGD07920.1| type IV pilus secretin PilQ/competence protein [Xanthomonas vesicatoria ATCC 35937] Length = 616 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/174 (22%), Positives = 80/174 (45%), Gaps = 7/174 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--STGATSVTTHD 311 F+ + L A++ ++ P + + + G + Y T+S ++G + Sbjct: 437 FALDMELSAMQEEGRGEVVSNPRIVTSNQREGVIKQGREIGYVTISGGGASGQSQANVQF 496 Query: 312 YGVVLHF--TPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGG 366 V+L TPT+ + R+ L + + E +N G +P R+ +T V + G Sbjct: 497 KEVLLELKVTPTITNDNRVFLNMNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGE 556 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ G+ + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 557 TVVIGGVYEFTDRESIAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 610 >gi|121603667|ref|YP_980996.1| general secretion pathway protein D [Polaromonas naphthalenivorans CJ2] gi|120592636|gb|ABM36075.1| general secretion pathway protein D [Polaromonas naphthalenivorans CJ2] Length = 738 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 11/152 (7%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 I GQ+ F +G Q S G+ ++ D G+ L P + G + + I E Sbjct: 523 IIGQNVPFVTG-QFTNTGSGGSNGSVNPFQTIERKDVGLTLRVKPQISENGTVKMAIFQE 581 Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VS G VN+ R ++ V + G IV+ GLL+D+ +E +P L +P+ Sbjct: 582 VSSVQPGSVNSVTGLITNKRSIESHVLVEDGSIIVIGGLLQDEFAGNQEKVPGLGDVPVF 641 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 G LF++ +R++T + + ++PV +RD Sbjct: 642 GNLFKSESRSRKKTNLMV-----FLRPVVVRD 668 >gi|313669028|ref|YP_004049312.1| pilus secretin [Neisseria lactamica ST-640] gi|313006490|emb|CBN87953.1| pilus secretin [Neisseria lactamica 020-06] Length = 726 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 110/256 (42%), Gaps = 26/256 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------GPSKSFA 231 +K+++ L++ + QV ++ I E + +G + TG G + F Sbjct: 458 RKLIDELDVPAQ-QVMIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFE 516 Query: 232 ADFGGKFVSE----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 GGK+ ++ S+ + + L A E + +TLA P + + Sbjct: 517 GGEGGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQN 576 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEP 339 + A SG + ++ SSS G++S TT VL T P + G+I + ++ P Sbjct: 577 RKEAKIESGTEIPFQDTSSSGGSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTP 636 Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 V V + + +T + +GGT+++ G+ +++ IPLL IP++G LF Sbjct: 637 VDCTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKIPLLGDIPVIGNLF 696 Query: 399 --RNSRFNREETEIFI 412 R NR E IFI Sbjct: 697 KTRGKSTNRRELLIFI 712 >gi|320107861|ref|YP_004183451.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] gi|319926382|gb|ADV83457.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] Length = 638 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 16/158 (10%) Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------------SVTTHDYGVVLHFTPT 321 P LTAI+ ++S + VSSS A + D G+ L TP Sbjct: 468 PILTAITTSASSSDVANELAAAGVSSSVIAQLTGSSGSGSTSTPQIQFEDIGLTLKITPR 527 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 VL G + L + ++ E + G D+P R + V +P G T +LA L+ + + Sbjct: 528 VLRSGEVQLDLDFKL-ESLAGTGVDDIPILNNRALKSVVTIPPGETTMLAALVSTNETKA 586 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G+P L +P + RN+ ++ E+ I TP +V Sbjct: 587 LDGVPGLDNLPGFQSTDRNADGAKD--ELLITVTPHIV 622 >gi|87300799|ref|ZP_01083641.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 5701] gi|87284670|gb|EAQ76622.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 5701] Length = 911 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%) Query: 338 EPVIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 +PV G D+ R+R+ DT +V + G T++L G++ DD Q+ P+L +P+LG Sbjct: 805 QPVPGCGFIDI--LRLRRLDTGSVRVRDGQTLILTGVISDDDFQVVSKWPILGDLPLLGQ 862 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 FR + +R + E+ I TP ++ Sbjct: 863 FFRKTSGSRNKNELVILVTPRII 885 >gi|332701375|ref|ZP_08421463.1| general secretion pathway protein D [Desulfovibrio africanus str. Walvis Bay] gi|332551524|gb|EGJ48568.1| general secretion pathway protein D [Desulfovibrio africanus str. Walvis Bay] Length = 746 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 64/264 (24%), Positives = 109/264 (41%), Gaps = 45/264 (17%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH----SITGSSS-------GPSKSFAADFGGKFVSEGG 243 QV ++V IAEV Q+G +TG++S PS +F + V G Sbjct: 485 QVLIEVIIAEVSLTDETQLGIDWRYLLDMTGNASIDFSLSNNPS-TFTSGLAATLVD--G 541 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--------- 294 D L AL + + L+ P + + S S + GQ + Sbjct: 542 D----------RLRATLRALASSNRTQILSSPHILS-SNHSEAKIDVGQEVPILTQTTET 590 Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPS 350 + S+ ++ + G++L TP + G + + I E+S V A + P Sbjct: 591 VDTTDPDNVSSVQQNIQYRNTGILLSVTPHINERGLVRMEISQEISSIEETSVGAINSPL 650 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R R A TTV + TIV+ GL++ + + +P + +IP+L LF + + E+ Sbjct: 651 FRKRLATTTVVVNDEQTIVIGGLMEQENTDNENNVPFVRRIPLLKYLFGYELKSFDNREL 710 Query: 411 FIAATPFLVKPVAMRDLSRPDDHY 434 I TP +V+ SR D+ + Sbjct: 711 LIFITPHVVE-------SREDNDF 727 >gi|285019110|ref|YP_003376821.1| type IV pilus assembly protein pilq [Xanthomonas albilineans GPE PC73] gi|283474328|emb|CBA16829.1| probable type iv pilus assembly protein pilq [Xanthomonas albilineans] Length = 639 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 8/179 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTT 309 FS + L AL+ ++ P + + + A G Y T++ TG +V Sbjct: 460 FSLDMELSALQEEGRGEVISNPRIVTSNQREAVIRQGKDIAYVTITGGTGGAAATPNVQF 519 Query: 310 HDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + + L TPT+ R+ L + + EV V N G +P R+ +T V + G Sbjct: 520 KEVLLELKVTPTITDDNRVFLNMNVKKDEVDHYVTLQNYGTVPEINRREINTAVLVDDGQ 579 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T+V+ G+ + + +P L +P LG LF+ ++ + E+ I TP +++ VA R Sbjct: 580 TVVIGGVYEFTNRNSLAKVPFLGDVPFLGNLFKQRGRSKAKAELLIFVTPKVMR-VAKR 637 >gi|162454464|ref|YP_001616831.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So ce 56'] gi|161165046|emb|CAN96351.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So ce 56'] Length = 774 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 5/177 (2%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F++ + + + L A E + +R ++ P + + + A + G + +S+ Sbjct: 593 FTLGSINNTVNLGVRLSAAEASGMLRVVSSPRILTLDNREARISQGTLIPFSQISAQ--G 650 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVEL 362 T + + L P V S G + + ++ EP + GD P+ R+A+T + + Sbjct: 651 VQTTFQEAKLQLLVKPHVTSDGSVAMHVKINRDEPDFNQTSARGD-PTILKREAETDLLI 709 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T V+ G+ + + + +P IP+LG LF+ R + E+ I TP +V Sbjct: 710 MDGHTAVIGGIFTRNTGRNLDQVPFFGDIPVLGLLFQRRRASDTRNELVIFLTPRIV 766 >gi|254246562|ref|ZP_04939883.1| AscC [Burkholderia cenocepacia PC184] gi|124871338|gb|EAY63054.1| AscC [Burkholderia cenocepacia PC184] Length = 543 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 384 GSELPYQAKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPA 441 Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRN--SRFN 404 + T VE+ +GGT+ + G L ++D+ + +PLL KIP LGALFR+ R Sbjct: 442 IHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTR----VPLLGKIPFLGALFRHRAQRDQ 497 Query: 405 REETEIFIAAT 415 R E +FI T Sbjct: 498 RNELVVFITPT 508 >gi|84785906|gb|ABC62092.1| secretion and cellular translocation protein C [Chlamydophila psittaci] Length = 672 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 8/161 (4%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-----DYG 313 +L AL++ + P + A Q ASF G ++T S+ T T D G Sbjct: 452 LLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIG 511 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V L TV + L+I+ +SE + P A T +++P G +V++G Sbjct: 512 VNLVVASTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLVMSGH 570 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE--TEIFI 412 ++D ++ G+PLL+ IP++ LF + R++ T +FI Sbjct: 571 IRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNTMMFI 611 >gi|325529582|gb|EGD06465.1| Type II secretory pathway, component PulD [Burkholderia sp. TJI49] Length = 397 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 20/204 (9%) Query: 220 TGSSSGPSKSFAADF-GGKF--VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 TG S+G + S AA GK G F + L F VL AL R +++P+ Sbjct: 196 TGDSNGSAFSLAASLLKGKLNITLAGNPFDNQVSLSTSDFSAVLSALSSDNRFRVVSQPS 255 Query: 277 LTAISGQSASFTSGGQ-HLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 L SG A+F+ G + + VS + G+ SV D GV+ + P V + L Sbjct: 256 LRVRSGAEATFSVGAEVPVLGAVSYAQGSGEPIQSVQYRDSGVIFNLRPQV-RESTVDLV 314 Query: 332 IQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + ++S + GVN + P+ R+ T+V++ I+L GL ++ G+ L Sbjct: 315 VDQQLSNFVQTTTGVN--NSPTLTKRQLTTSVQMRDREVILLGGLTEEKTSDNSTGLSFL 372 Query: 389 SKIPILGALFRNSRFNREETEIFI 412 K LFR++ +EI + Sbjct: 373 PK------LFRSNTSEASNSEILL 390 >gi|225024352|ref|ZP_03713544.1| hypothetical protein EIKCOROL_01227 [Eikenella corrodens ATCC 23834] gi|224942849|gb|EEG24058.1| hypothetical protein EIKCOROL_01227 [Eikenella corrodens ATCC 23834] Length = 707 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 50/104 (48%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + G + + I+ + P ++ T + GGTI+L G+ + Sbjct: 595 LTVTPQITPDGNVIMDIKLNKDSVDENCSVLGTPCINTKELVTRAMVEDGGTIILGGIYE 654 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++ + +PLL IP++G LFR +R N + E+ I TP ++ Sbjct: 655 EENSNSQYKVPLLGDIPVVGNLFRGTRRNNSKNELLIFITPRIM 698 >gi|307610026|emb|CBW99559.1| type II protein secretion LspD [Legionella pneumophila 130b] Length = 791 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 113/258 (43%), Gaps = 31/258 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K V++ L+I Q+ ++ +AEV + +G + + +G K F F Sbjct: 490 KTVISQLDIKPA-QLLIEALVAEVDEKDVNNLGIEWG-SNQQTGNPKDFRPGFA------ 541 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299 + K +D F+ ++AL R L+ P++ + + A G Q T S Sbjct: 542 --IINSKTRID--DFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597 Query: 300 ----SSTGATSVTTHD-YGVVLH-FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350 +T A+ TT D V LH + ++ G+ G+++Q + + + Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQ-GIQLQIDQGNDTLDPATATTDNTTT 656 Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ Sbjct: 657 PTFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKR 716 Query: 409 EIFIAATPFLVKPVAMRD 426 + + +KP+ +R+ Sbjct: 717 VLMV-----FIKPIILRN 729 >gi|292489334|ref|YP_003532221.1| type II secretion system protein OutD [Erwinia amylovora CFBP1430] gi|292898442|ref|YP_003537811.1| type II secretion system protein [Erwinia amylovora ATCC 49946] gi|291198290|emb|CBJ45396.1| type II secretion system protein [Erwinia amylovora ATCC 49946] gi|291554768|emb|CBA22567.1| Type II secretion system protein outD [Erwinia amylovora CFBP1430] gi|312173499|emb|CBX81753.1| Type II secretion system protein outD [Erwinia amylovora ATCC BAA-2158] Length = 645 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 5/179 (2%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 ++ + AL+ + LA P++ + A FT G T + +T SV Sbjct: 414 NWAGLFTALQTNSQNNILATPSIVTLDNMEAEFTVGQDVPILTGTQTTNTDGVYNSVDRK 473 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIV 369 G+ L P + + + I+ EVS + + ++ R V + SG T+V Sbjct: 474 SVGIKLKVKPQINKGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNAVLVESGKTVV 533 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 + GLL ++ +P+L +IP++G LFR + + + + + P +++ DL+ Sbjct: 534 VGGLLDTTHSNVESSVPVLGQIPLIGRLFRYTSDKKSKRNLMLFIRPTIIRQQDKFDLT 592 >gi|261211199|ref|ZP_05925488.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC341] gi|260839700|gb|EEX66311.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC341] Length = 571 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV-LHF 318 L AL+ + ++ P L + Q A G + Y + SS+ S + V+ L Sbjct: 409 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPY--LESSSSGASTVSFKKAVLSLKV 466 Query: 319 TPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 467 TPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQH 526 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 527 SINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569 >gi|90023220|ref|YP_529047.1| helix-turn-helix, AraC type [Saccharophagus degradans 2-40] gi|89952820|gb|ABD82835.1| type II and III secretion system protein [Saccharophagus degradans 2-40] Length = 666 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 11/169 (6%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------T 305 +F +L AL+ ++ L+ P+L + Q AS + G ++T S ST T Sbjct: 430 NFIALLSALQTSSDANILSTPSLVTMDNQEASISVGQSVPFRTGSYSTTGTTGSVGNPFT 489 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 ++ D G+ L TP V +I L I EVS V K +T + G Sbjct: 490 TIQREDVGITLTVTPHVNEGNKILLDISQEVSSISSSVAGSADLITNQSKIETQLLANDG 549 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR--NSRFNREETEIFI 412 ++L GL+++D+Q +PLL IP+LG LF+ +++F ++ +FI Sbjct: 550 QIVILGGLIQEDVQDGDTRVPLLGSIPLLGHLFKYQSTKFLKKNLMVFI 598 >gi|262193577|ref|YP_003264786.1| type IV pilus secretin PilQ [Haliangium ochraceum DSM 14365] gi|262076924|gb|ACY12893.1| type IV pilus secretin PilQ [Haliangium ochraceum DSM 14365] Length = 1269 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 4/168 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE +R ++ P +T ++ A + G +S++ T D + L T Sbjct: 1102 LSALEDTGTVRIISAPKITVLNNVEAEISQGVSIPISVISANGVQTQFVQAD--LSLEVT 1159 Query: 320 PTV-LSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P V I + +Q + +E + A P+ ++A TTV + T V+ G+ + Sbjct: 1160 PHVSQRDCSIAMDLQIQKNEADFVNTGARGDPTILRKEASTTVLVADNETTVIGGIYTRN 1219 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +P L +P+LG LF+N R N E TE+ + TP + +R Sbjct: 1220 SGLSYSKVPFLGDLPLLGWLFKNRRENDERTEVLVFITPRITNKAFLR 1267 >gi|126441103|ref|YP_001059995.1| Type II secretory pathway, component PulD [Burkholderia pseudomallei 668] gi|126220596|gb|ABN84102.1| type II secretory pathway, component PulD [Burkholderia pseudomallei 668] Length = 394 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 19/166 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSG------GQHLYKTVSSSTGATSVTT 309 FE + AL + R + P L SGQ A G G Y + S + SV Sbjct: 232 FEAAIAALNSDSRFRVVTSPNLRVRSGQLARLNVGQSVPVVGSVSYPSASGAP-VQSVQY 290 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGG 366 D GV+ PTV + I L + E+S+ V GVN + P+ RK +++ + G Sbjct: 291 QDAGVIFQVQPTVKASA-IDLNVIEEISDFVRTTTGVN--NSPTKNTRKLESSFSVEDGD 347 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +++ GL +D L G+ L + R N TEI + Sbjct: 348 AVLIGGLTQDKESHLDSGLSFLP------SWMRGRASNSSRTEILL 387 >gi|89901694|ref|YP_524165.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89346431|gb|ABD70634.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 710 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 7/168 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + + Q + G L V+SS+GAT++ + L T Sbjct: 548 LSALEADGKGKVVSSPRVVT-ADQIKALIEQGTELPYQVASSSGATAIAFRKANLKLEVT 606 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G I L + +V++ +G + + + T V + +GGT+V+ G+ + Sbjct: 607 PQITPEGNIILDL--DVNKDTVGQSTAAGFAINTKHIKTQVLVENGGTVVIGGIFELTES 664 Query: 380 QLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLVKPVAMR 425 + +P L +P +G LF R N++E +FI TP +V A R Sbjct: 665 DNETKVPFLGDLPGVGNLFKTRGRVSNKQEMLVFI--TPKVVADRAAR 710 >gi|307245013|ref|ZP_07527110.1| hypothetical protein appser1_2250 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854178|gb|EFM86386.1| hypothetical protein appser1_2250 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 429 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 1/162 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + +A P L + + AS G + Y S ++ + + L T Sbjct: 251 LTALEQENNVEIIASPRLLTTNKKPASIKQGTEVPYVLYSRKDEVKNIEFKEAVLGLQVT 310 Query: 320 PTVLSPGRIGLR-IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + + +I L + T+ S G + + ++ +T V G TIVL G+ + Sbjct: 311 PHISNDKQILLDLVVTQNSPNSTGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLT 370 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +P+L IP+L LF +S + E+ I TP++VK Sbjct: 371 AKGEDRVPILGSIPVLKKLFSHSSDKISKRELVIFVTPYIVK 412 >gi|298529582|ref|ZP_07016985.1| type IV pilus secretin PilQ [Desulfonatronospira thiodismutans ASO3-1] gi|298511018|gb|EFI34921.1| type IV pilus secretin PilQ [Desulfonatronospira thiodismutans ASO3-1] Length = 569 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 116/290 (40%), Gaps = 50/290 (17%) Query: 159 RAVELS---ETFLSQSGR-NQYANSSS----------KKVMNLLNIAG--EDQVTLKVTI 202 RA EL E FLS+ GR Q A +++ +++ L++ E QV ++ + Sbjct: 295 RADELQPRIEDFLSERGRVTQDARTNTLIVRDTPSQLEEITQLIDNLDRPERQVLIEARV 354 Query: 203 A----EVRRDILKQIGFQHSITGSSSG---PSK-SFAADFGG-----KFVSEGGDFSVKG 249 RR++ GF + G S P +F +D G EG FSV Sbjct: 355 VYATESFRRELGVDWGFAYQSPGLDSNIISPDTFNFPSDLEGLLGVGYMGHEGQSFSV-- 412 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 E L E T++ P + ++ Q A G + A T Sbjct: 413 ------LEARLRLGESQGKSNTISAPQIMTLNNQEAKIEQGTDVAVDVID----ADLRTR 462 Query: 310 HDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +Y + L TP + + L ++ + P G N V+KA+TT+ G Sbjct: 463 REYVPATLELIVTPQITPDNNLILNLEVSDNAPGEGGN------IEVKKAETTLFAEDGE 516 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 TIV+ G+ K Q + GIP LS++PILG LF++ E+ I P Sbjct: 517 TIVIGGIKKLSESQRETGIPPLSRLPILGWLFKHELVEENMDELLIFIRP 566 >gi|168750719|ref|ZP_02775741.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4113] gi|168757329|ref|ZP_02782336.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4401] gi|168763015|ref|ZP_02788022.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4501] gi|168769207|ref|ZP_02794214.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4486] gi|168769317|ref|ZP_02794324.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4486] gi|168776690|ref|ZP_02801697.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4196] gi|168783068|ref|ZP_02808075.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4076] gi|168789906|ref|ZP_02814913.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC869] gi|168802552|ref|ZP_02827559.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC508] gi|195940092|ref|ZP_03085474.1| EtpD [Escherichia coli O157:H7 str. EC4024] gi|254667451|ref|YP_003082137.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359] gi|261225635|ref|ZP_05939916.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK2000] gi|187767920|gb|EDU31764.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4196] gi|188015158|gb|EDU53280.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4113] gi|188999508|gb|EDU68494.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4076] gi|189355641|gb|EDU74060.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4401] gi|189361611|gb|EDU80030.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4486] gi|189361663|gb|EDU80082.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4486] gi|189366756|gb|EDU85172.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4501] gi|189370555|gb|EDU88971.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC869] gi|189375476|gb|EDU93892.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC508] gi|254595803|gb|ACT75163.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359] gi|320187907|gb|EFW62576.1| General secretion pathway protein D [Escherichia coli O157:H7 str. EC1212] gi|326337158|gb|EGD60994.1| General secretion pathway protein D [Escherichia coli O157:H7 str. 1125] gi|326347656|gb|EGD71374.1| General secretion pathway protein D [Escherichia coli O157:H7 str. 1044] Length = 650 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 25/161 (15%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ +L AL ++ LA P++ + A+F T+ G +++ TV Sbjct: 414 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 473 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358 T G+ L P + + L I+ EVS + + ++ R Sbjct: 474 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 524 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + +G T+V+ GLL I+ + +PLL IP+LG LFR Sbjct: 525 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFR 565 >gi|75994479|ref|YP_325593.1| type II secretion protein [Escherichia coli O157:H7 EDL933] gi|3822147|gb|AAC70101.1| type II secretion protein [Escherichia coli O157:H7] Length = 642 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 25/161 (15%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ +L AL ++ LA P++ + A+F T+ G +++ TV Sbjct: 406 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 465 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358 T G+ L P + + L I+ EVS + + ++ R Sbjct: 466 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 516 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + +G T+V+ GLL I+ + +PLL IP+LG LFR Sbjct: 517 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFR 557 >gi|262363857|gb|ACY60577.1| outer membrane secretin precursor [Yersinia pestis D106004] Length = 470 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/228 (21%), Positives = 100/228 (43%), Gaps = 15/228 (6%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 ++ + ++I ++ D L ++G + G +G + G + + ++ ++D Sbjct: 144 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDQSNIASNGALGSLIDAR 202 Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + +L + LE + + ++ PTL ++ ++A Y + + Sbjct: 203 GLDYLLARVNLLENEGSAQVVSRPTL--LTQENAQAVIDHHETYYVKVTGKEVAELKGIT 260 Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365 YG +L TP VL+ G + L I+ +P G++ +P+ DT + G Sbjct: 261 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDG--IPTISRTVVDTVARVGHG 318 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412 ++++ G+ +D++ +PLL IP LGALF R S R +FI Sbjct: 319 QSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFI 366 >gi|254255049|ref|ZP_04948366.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] gi|124899694|gb|EAY71537.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] Length = 552 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 14/220 (6%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 + L + I ++ R+ L Q+G T S G S S + + GG Sbjct: 306 HIELALWIIDLEREALDQLGVNWRGTVSLGGMSASLNMNNNTSLSTVGGT---------- 355 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL R + ++ P + A F S K V A + YG Sbjct: 356 EFIASVTALARDRRAQIVSRPVVLTQENTPAVFDSSQTFYAKLVGER--AVDLKEVTYGT 413 Query: 315 VLHFTPTVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 +++ P + I L + E S V+ MP+ K T +P G ++++ G Sbjct: 414 MVNVVPRFNAKDDIELALNIEDGSAKSSNVDQDPMPTVNRTKISTVARVPKGKSLLVGGY 473 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFI 412 + + + E IP L +P +G LFR + NR+ +F+ Sbjct: 474 TRGETGDVVEKIPGLGSLPFIGGLFRFKTEVNRDTVRVFL 513 >gi|54297230|ref|YP_123599.1| type II protein secretion LspD [Legionella pneumophila str. Paris] gi|53751015|emb|CAH12426.1| type II protein secretion LspD [Legionella pneumophila str. Paris] Length = 791 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 113/258 (43%), Gaps = 31/258 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K V++ L+I Q+ ++ +AEV + +G + + +G K F F Sbjct: 490 KTVISQLDIKPA-QLLIEALVAEVDEKDVNNLGIEWG-SNQQTGNPKDFRPGFA------ 541 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299 + K +D F+ ++AL R L+ P++ + + A G Q T S Sbjct: 542 --IINSKTRID--DFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597 Query: 300 ----SSTGATSVTTHD-YGVVLH-FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350 +T A+ TT D V LH + ++ G+ G+++Q + + + Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQ-GIQLQIDQGNDTLDPATATTDNTTT 656 Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ Sbjct: 657 PTFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKR 716 Query: 409 EIFIAATPFLVKPVAMRD 426 + + +KP+ +R+ Sbjct: 717 VLMV-----FIKPIILRN 729 >gi|315186870|gb|EFU20628.1| type II and III secretion system protein [Spirochaeta thermophila DSM 6578] Length = 696 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 12/173 (6%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------STGAT 305 ++F + L+ + A TLTA+SG+ SF + Y+ + STG Sbjct: 500 YTFASQLNLKLEESRANIYAHTTLTALSGKDVSFQNTSTFRYRDLEVDPDTGELLSTGVI 559 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELP 363 T G +L+ V G I + I +SE + +P R T + Sbjct: 560 RELTS--GFILNLGGWVSGDGMITMNISATLSERSSESSDSTSAIPPTTERVVSTFLRTD 617 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 SG + ++GL++ ++ +P+L IP+LG LFRNS+ E+ E+ I P Sbjct: 618 SGKPVSISGLVQKKKTKIVNKVPVLGDIPLLGFLFRNSQEKEEDMEMVIYVVP 670 >gi|282890888|ref|ZP_06299405.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499242|gb|EFB41544.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus] Length = 955 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 24/229 (10%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-- 312 SF ++ A+ T+ + P + A +A G Y+T S S SV T ++ Sbjct: 720 SFGALVKAIHDKTSTNIVMNPKILAEDNVTAEIFVGENTQYQTQSISNDQGSVITTNFEY 779 Query: 313 ---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKADTTVELP 363 G L TP + + + L I+ EVS NA + P+ R+ + T V +P Sbjct: 780 RNIGTTLKITPFLGNNDIVTLEIRQEVSSVASTTNAQALNNITPGPTTRLSRTTTRVHVP 839 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PV 422 +V++G+++D + + +P L +P++GA F + E+ + I P ++ Sbjct: 840 DKYFLVISGMVQDQETRRRVSVPCLGGLPVIGAAFSDKNVTDEKRNLMIFIRPEIIDTEE 899 Query: 423 AMRDLSRPDD---HYSVE---------DDAKAFFFNRVNKIYGPKEASE 459 +++L++ Y E D+A FF R Y EA E Sbjct: 900 EVQNLTKHQQDLFRYKCETKRSWKYEVDEALDFFNLRSTNKYEACEACE 948 >gi|116688415|ref|YP_834038.1| type IV pilus secretin PilQ [Burkholderia cenocepacia HI2424] gi|116646504|gb|ABK07145.1| type IV pilus secretin PilQ [Burkholderia cenocepacia HI2424] Length = 543 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 384 GSELPYQAKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPA 441 Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRN--SRFN 404 + T VE+ +GGT+ + G L ++D+ + +PLL KIP LGALFR+ R Sbjct: 442 IHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTR----VPLLGKIPFLGALFRHRAQRDQ 497 Query: 405 REETEIFIAAT 415 R E +FI T Sbjct: 498 RNELVVFITPT 508 >gi|209528276|ref|ZP_03276739.1| type II and III secretion system protein [Arthrospira maxima CS-328] gi|209491296|gb|EDZ91688.1| type II and III secretion system protein [Arthrospira maxima CS-328] Length = 737 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 20/177 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + L A + + L +PTL G+SAS Q + + + S T + T Sbjct: 537 FLSTLQAQIVSGRAKILTDPTLVVKEGESASV----QLVQQVLQSRTTIITDTPSGSRET 592 Query: 316 LHFTPT------------VLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTT 359 + PT + G + + I EVS P V G+ + +R + Sbjct: 593 IQPDPTNVGLTLGVNVERIDDNGFVTMSINPEVSSPGARVATGNDDFFLQVFRRSLSSGR 652 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + L G T++++G+++D + IPLL +PI+G+LFR S + E E+ + TP Sbjct: 653 IRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPIVGSLFRRSTTSSERAEVIVLVTP 709 >gi|117924235|ref|YP_864852.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1] gi|117607991|gb|ABK43446.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1] Length = 574 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 20/164 (12%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----------STGATSVTTHDYGVVLH 317 ++ L+ PT+ A GQ + + G + Y + S + V T G+++ Sbjct: 404 VQVLSNPTIRARHGQPSMISVGTSNTYVSESEITTTGTGTTATTQADVVVNTVFDGLMIG 463 Query: 318 FTPTVLSPGRIGLR---IQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 TP + GR+ + I+++V+ V G N +P +++ T +E SG + Sbjct: 464 VTPFIKEDGRVVMTVHPIKSDVTASSLDLVSVGGTNQVALPEVELKEMSTILETHSGDLV 523 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 L GL+ + K G+PLL IP+LG LF + + E+ I Sbjct: 524 FLGGLIDKEKSATKTGMPLLGDIPLLGRLFSTDSSSDKTREMII 567 >gi|281356804|ref|ZP_06243295.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316931|gb|EFB00954.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 836 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 63/303 (20%), Positives = 116/303 (38%), Gaps = 74/303 (24%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT---GSSS--------------GPSKSFAADFG 235 E V + E+ +D LK++ F + +T G+ + GP+ + + Sbjct: 512 EPMVQILCKFIEISQDDLKELAFNYQLTVNGGAEANVMENGKYPRDVKFGPNSNELLRYY 571 Query: 236 GKFVSEGGDFSVKGVLDRFSFETV------------LHALERATAIRTLAEPTLTAISGQ 283 + GD S +F V L AL +A ++ L P +T + GQ Sbjct: 572 RDETNSSGDSSTGNPTYNSTFSYVWQNADGTAIVANLFALNQADSMDVLGAPRVTTLPGQ 631 Query: 284 SASFTSGGQHLY------------KTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGL 330 A + + T S G+ T++ G+ P S P ++G+ Sbjct: 632 PAHIEMVTERYFPEDWEIVDLPNNNTGGSGDGSNEGTSYWRGISADPQPNFESEPTKLGI 691 Query: 331 --RIQTEVSE-----------PVIGVNAG-------------------DMPSYRVRKADT 358 IQ E+ + PV ++ MP + R +T Sbjct: 692 VFDIQPEIDKERRTITAHVLLPVQTLSGWMIFDARTYDSDGNTDGEYYQMPIFDKRSIET 751 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + + G T+VL G+ +D ++ + + IP+L +PI+G LF++ + ++ + + T L Sbjct: 752 DITVYDGETVVLGGVAQDKVEIVNDKIPVLGDLPIVGRLFQSKYTDSQKRNLLVFLTCRL 811 Query: 419 VKP 421 VKP Sbjct: 812 VKP 814 >gi|208811320|ref|ZP_03253080.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4206] gi|208817430|ref|ZP_03258459.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4045] gi|208823379|ref|ZP_03263696.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4042] gi|209395621|ref|YP_002268498.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4115] gi|217329885|ref|ZP_03445960.1| general secretion pathway protein D [Escherichia coli O157:H7 str. TW14588] gi|208729950|gb|EDZ79167.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4206] gi|208730607|gb|EDZ79306.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4045] gi|208736974|gb|EDZ84659.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4042] gi|209157076|gb|ACI34510.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4115] gi|217317116|gb|EEC25549.1| general secretion pathway protein D [Escherichia coli O157:H7 str. TW14588] Length = 655 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 25/161 (15%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ +L AL ++ LA P++ + A+F T+ G +++ TV Sbjct: 419 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 478 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358 T G+ L P + + L I+ EVS + + ++ R Sbjct: 479 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 529 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + +G T+V+ GLL I+ + +PLL IP+LG LFR Sbjct: 530 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFR 570 >gi|886477|emb|CAA90274.1| SepC [Escherichia coli] Length = 512 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 39/227 (17%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 Q+ + V+I +V + L+Q+G S T G+ + S + + +S +F ++ Sbjct: 275 QIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSSTAQVNISSSVISNASNFMIR- 333 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SV 307 ++AL++ + + L++P++ ++ A Y VS A+ S+ Sbjct: 334 ----------VNALQQNSKAKILSQPSIITLNNMQA-ILDKNVTFYTKVSGEKVASLRSI 382 Query: 308 TTHDYGVVLHFTPTVLSPG------------RIGLRIQTEVSEPVIGVNAGD----MPSY 351 T+ G +L TP +L R+ L IQ + ++ NA D +P Sbjct: 383 TS---GTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQ-DGNQSTNQSNAQDASSTLPEV 438 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + + T L +G LA L K K+GIPLLS IP++G+LF Sbjct: 439 QNSEMTTEATLSAGKVYYLADLSKIKKVPSKDGIPLLSDIPVIGSLF 485 >gi|170731725|ref|YP_001763672.1| type IV pilus secretin PilQ [Burkholderia cenocepacia MC0-3] gi|169814967|gb|ACA89550.1| type IV pilus secretin PilQ [Burkholderia cenocepacia MC0-3] Length = 543 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + GR+ L + +V++ +G P+ Sbjct: 384 GSELPYQAKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPA 441 Query: 351 YRVRKADTTVELPSGGTIVLAG----LLKDDIQQLKEGIPLLSKIPILGALFRN--SRFN 404 + T VE+ +GGT+ + G L ++D+ + +PLL KIP LGALFR+ R Sbjct: 442 IHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTR----VPLLGKIPFLGALFRHRAQRDQ 497 Query: 405 REETEIFIAAT 415 R E +FI T Sbjct: 498 RNELVVFITPT 508 >gi|117924415|ref|YP_865032.1| type II and III secretion system protein [Magnetococcus sp. MC-1] gi|117608171|gb|ABK43626.1| type II and III secretion system protein [Magnetococcus sp. MC-1] Length = 802 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 63/259 (24%), Positives = 109/259 (42%), Gaps = 41/259 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGG----KFVSEGGD 244 QV ++ + EV + LK++G S + S G A GG F +G + Sbjct: 256 QVYVEGMVLEVSDEGLKELGASLSSITRGGVNSLSLGVLSPVAVSAGGGNVFSFTRDGTN 315 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302 +V L + ++AL + L+ P++ IS + A+ Y + +ST Sbjct: 316 AAVNNALIK------INALVSKGEAQILSRPSILTISNRQATIQVVDVVQYPVLQNSTDA 369 Query: 303 -GATSVTTHDY-----GVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGDM------- 348 G T ++++ + G+ L+ P V + G + L I V E ++ N GD+ Sbjct: 370 VGNTILSSYSFEAVRPGITLNLRPRVTASGHEVNLEIDVTV-ESLVTANDGDVYNNSGTL 428 Query: 349 ----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP----LLSKIPILGALFRN 400 P R+ T +P ++ GL+ D + IP LL+ IPILGAL + Sbjct: 429 LGTKPGSSSRRVQTFARIPDRMPFIIGGLVSTDREMTSNRIPVVGDLLADIPILGALVGS 488 Query: 401 SRFNREETEIFIAATPFLV 419 + + E+ I TP ++ Sbjct: 489 TLRQYTKREVIIVLTPHIL 507 >gi|148358852|ref|YP_001250059.1| type II protein secretion LspD [Legionella pneumophila str. Corby] gi|296106898|ref|YP_003618598.1| type II protein secretion LspD [Legionella pneumophila 2300/99 Alcoy] gi|148280625|gb|ABQ54713.1| type II protein secretion LspD [Legionella pneumophila str. Corby] gi|295648799|gb|ADG24646.1| type II protein secretion LspD [Legionella pneumophila 2300/99 Alcoy] Length = 791 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 113/258 (43%), Gaps = 31/258 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K V++ L+I Q+ ++ +AEV + +G + + +G K F F Sbjct: 490 KTVISQLDIKPA-QLLIEALVAEVDEKDVNNLGIEWG-SNQQTGNPKDFRPGFA------ 541 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299 + K +D F+ ++AL R L+ P++ + + A G Q T S Sbjct: 542 --IINSKTRID--DFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597 Query: 300 ----SSTGATSVTTHD-YGVVLH-FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350 +T A+ TT D V LH + ++ G+ G+++Q + + + Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQ-GIQLQIDQGNDTLDPATATTDNTTT 656 Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ Sbjct: 657 PTFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKR 716 Query: 409 EIFIAATPFLVKPVAMRD 426 + + +KP+ +R+ Sbjct: 717 VLMV-----FIKPIILRN 729 >gi|52841551|ref|YP_095350.1| type II protein secretion LspD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628662|gb|AAU27403.1| type II protein secretion LspD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 791 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 113/258 (43%), Gaps = 31/258 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K V++ L+I Q+ ++ +AEV + +G + + +G K F F Sbjct: 490 KTVISQLDIKPA-QLLIEALVAEVDEKDVNNLGIEWG-SNQQTGNPKDFRPGFA------ 541 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299 + K +D F+ ++AL R L+ P++ + + A G Q T S Sbjct: 542 --IINSKTRID--DFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597 Query: 300 ----SSTGATSVTTHD-YGVVLH-FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350 +T A+ TT D V LH + ++ G+ G+++Q + + + Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQ-GIQLQIDQGNDTLDPATATTDNTTT 656 Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ Sbjct: 657 PTFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKR 716 Query: 409 EIFIAATPFLVKPVAMRD 426 + + +KP+ +R+ Sbjct: 717 VLMV-----FIKPIILRN 729 >gi|10955268|ref|NP_052609.1| EtpD [Escherichia coli O157:H7 str. Sakai] gi|149930769|ref|YP_001294686.1| w0022 [Escherichia coli] gi|37695757|gb|AAR00419.1|AF401292_20 w0022 [Escherichia coli] gi|2598401|emb|CAA70955.1| etpD [Escherichia coli] gi|3337000|dbj|BAA31759.1| Type II secretion pathway related protein [Escherichia coli O157:H7 str. Sakai] Length = 585 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 25/161 (15%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ +L AL ++ LA P++ + A+F T+ G +++ TV Sbjct: 349 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 408 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358 T G+ L P + + L I+ EVS + + ++ R Sbjct: 409 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 459 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + +G T+V+ GLL I+ + +PLL IP+LG LFR Sbjct: 460 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFR 500 >gi|262401919|ref|ZP_06078484.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC586] gi|262351891|gb|EEZ01022.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC586] Length = 567 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV-LHF 318 L AL+ + ++ P L + Q A G + Y + SS+ S + V+ L Sbjct: 405 LSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPY--LESSSSGASTVSFKKAVLSLKV 462 Query: 319 TPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP + R+ L + + + G+ S ++ T V + +G T+VL G+ + Sbjct: 463 TPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQH 522 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + ++E+ I TP +V Sbjct: 523 SINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 565 >gi|120555550|ref|YP_959901.1| type II and III secretion system protein [Marinobacter aquaeolei VT8] gi|120325399|gb|ABM19714.1| type II and III secretion system protein [Marinobacter aquaeolei VT8] Length = 733 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 12/173 (6%) Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSST---GATSVTTH--- 310 VL+A + + P + SG++A+ G + L T S T G T V Sbjct: 531 VLNAFYDSNQAVIRSSPKIMVKSGETATIEVGNEIPVLTSTRQSDTQTDGDTDVLQQFQY 590 Query: 311 -DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGT 367 GV L P V + G + +RI+ +SE + GD +P+ R +T++ L GG+ Sbjct: 591 RKTGVDLTVEPIVQASGLVDIRIRQSLSE-TQDTSGGDSFLPTILNRAVETSLTLRDGGS 649 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +VL GL+ Q ++G+P L K+P+LG LFR + TE+ + P++V+ Sbjct: 650 VVLGGLISKTNSQGEQGVPWLGKLPLLGPLFRTDSDSTSTTELMVMVVPYVVR 702 >gi|171060077|ref|YP_001792426.1| type IV pilus secretin PilQ [Leptothrix cholodnii SP-6] gi|170777522|gb|ACB35661.1| type IV pilus secretin PilQ [Leptothrix cholodnii SP-6] Length = 726 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 2/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + A G + Y+T + A S+ + L T Sbjct: 560 LSALEAEGKGKLVSSPRVVTADQVKALIEQGTELPYQTGGNQQTAPSIAFRKATLKLEVT 619 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G I + + +V++ +G + + T V + +GGT+V+ G+ + Sbjct: 620 PQITPEGNIIMDV--DVNKDSVGQQTLAGFAINTKHVKTQVLVENGGTVVIGGIFETTET 677 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P+L IP LG LFRN +TE+ + TP ++ Sbjct: 678 ESVNKVPVLGDIPFLGVLFRNKTRVANKTELLVFLTPKVI 717 >gi|330813196|ref|YP_004357435.1| hypothetical protein SAR11G3_00221 [Candidatus Pelagibacter sp. IMCC9063] gi|327486291|gb|AEA80696.1| hypothetical protein SAR11G3_00221 [Candidatus Pelagibacter sp. IMCC9063] Length = 518 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 6/156 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + ALE +T++ P + + Q A+ T G + Y+ S TS + + L T Sbjct: 363 ITALEVLGKGKTISNPKVFTLDNQIATITQGEEISYQATGSEGADTSF--KEAALKLTVT 420 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P+++ G + L I + V NAG+ PS + T + + G +V+ G+ K+ + Sbjct: 421 PSIIGDGNVLLEIMVN-NNTVNRANAGE-PSINKMEISTKLLVADGDIVVIGGIKKNKVF 478 Query: 380 QLKEGIPLLSKIPILGALFR-NSRFNR-EETEIFIA 413 K P + +P+LG LF+ S+ ++ +E IFIA Sbjct: 479 SSKSQTPGVGNLPVLGNLFKGKSKSDKLDELLIFIA 514 >gi|207724596|ref|YP_002254993.1| hrcc (hrpa) protein (partial sequence c terminus) [Ralstonia solanacearum MolK2] gi|206589818|emb|CAQ36779.1| probable hrcc (hrpa) protein (partial sequence c terminus) [Ralstonia solanacearum MolK2] Length = 303 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + AL++ R A P + + A + Q+ Y V+ A + GV L Sbjct: 142 ISALQQTNQARITASPKVATLDNTEAVMDNR-QNFYVPVAGYQSA-DLYAISAGVSLRVL 199 Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ G RI + + E + + G++P + DT + G ++++AG D Sbjct: 200 PMVVMDGGTVRIRMNVHIEDGQ-ITSQQVGNLPVTSQSEIDTQALINEGESLLIAGYSVD 258 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + IP LSKIP++GALFR + + + TP ++ P Sbjct: 259 QQAKTVDAIPGLSKIPLVGALFRTDQTTGQRFQRMFLVTPRVITP 303 >gi|253997512|ref|YP_003049576.1| type IV pilus secretin PilQ [Methylotenera mobilis JLW8] gi|253984191|gb|ACT49049.1| type IV pilus secretin PilQ [Methylotenera mobilis JLW8] Length = 719 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 11/179 (6%) Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 +S+ V L A+E + ++ P + + A +G + Y SSS GA Sbjct: 541 YSIYNVAAGLLLNLELTAMETDQRGKIVSSPRVITANQHKAKIAAGTEIPYLQASSS-GA 599 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T+V + L TP + +I + + ++ + +G +PS + +T V + + Sbjct: 600 TNVAFKPAVLSLEVTPQITPDEKIIMEL--DIKKDKVGQIFNGVPSIDTQNINTQVLVGN 657 Query: 365 GGTIVLAGLL----KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T VL G+ +DD+ + +P +P+ G LF+ ++TE+ I TP +V Sbjct: 658 GETAVLGGIFEQIERDDVSK----VPFFGDLPLFGNLFKKKTRQNDKTELLIFITPKIV 712 >gi|149200050|ref|ZP_01877075.1| type 4 fimbrial biogenesis protein PilQ [Lentisphaera araneosa HTCC2155] gi|149136808|gb|EDM25236.1| type 4 fimbrial biogenesis protein PilQ [Lentisphaera araneosa HTCC2155] Length = 864 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/339 (20%), Positives = 115/339 (33%), Gaps = 106/339 (31%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT------------------------GSSSGP- 226 E+Q+ ++ E+ +D + ++ F+ SI G + P Sbjct: 510 AENQIIIESKFYEINQDDIDELAFEWSIARIEDGSGFTDPNAGYIGRDPSYVGGVNGDPN 569 Query: 227 -------SKSFAADFGGKFVSEGGD----------------------FSVKGVLDRFSFE 257 S F+ D G S GGD F +L +F Sbjct: 570 GSLNDFLSDGFSLDKSGDLTSAGGDGLESAVRSLGSVLGAPGLSQGTFKFASILGDTTFN 629 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----------KTVSSSTGATSV 307 T++ A+++ + L P +T +G +A + + + G+ S Sbjct: 630 TLVSAIQQRSGEDVLNAPKVTTQNGHTAKIRVVQERYFPEEWEEPEVEQNSQGDGGSAST 689 Query: 308 TT---------HDYGVVLHFTPTVLSPGR-IGLRIQTEVSE------------------- 338 T D G VL TP + R I L+++ EV E Sbjct: 690 VTPSKPVFGEPRDIGAVLTVTPQIDPDQRVIELQLKPEVIEFVEYDNTFNVDMLVGQEVT 749 Query: 339 --PVIG-----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 P+IG MP + R DTTV + G T+ L G++ ++ ++ I Sbjct: 750 FIPIIGNPFTVTVYTAFEQKFSMPIFESRTVDTTVRVWDGETLALGGMISENKTTYEDKI 809 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P L IP LG F ++ + + I T L+ P + Sbjct: 810 PYLGDIPFLGRFFTSNGERSVKQNLIIFVTARLIDPSGL 848 >gi|319791845|ref|YP_004153485.1| general secretion pathway protein d [Variovorax paradoxus EPS] gi|315594308|gb|ADU35374.1| general secretion pathway protein D [Variovorax paradoxus EPS] Length = 770 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 27/218 (12%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 GG + + + + F+ + + L + TL I GQ+ F +G Y + S S Sbjct: 493 GGQYILGAIANFFNSDGDANVLSTPNLL-TLDNEEAKIIIGQNVPFPTGS---YASTSGS 548 Query: 302 TGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRK 355 G TT D G+ L PT+ G + + I E S + N+ + P+ R Sbjct: 549 VGVNPFTTVERKDVGLTLRVRPTINENGTVRMTIFQETS--TVDQNSLANPNGPTTNKRS 606 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +++V + GG ++L GLL D E IPL IP+LG LF+N R ++ + + Sbjct: 607 IESSVLVEDGGLVMLGGLLSDTYNNNIEKIPLAGDIPVLGNLFKNENRTRNKSNLMM--- 663 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 ++P MRD + +AF ++R ++I G Sbjct: 664 --FLRPAVMRDGA----------STEAFAYDRYDEIRG 689 >gi|294055809|ref|YP_003549467.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] gi|293615142|gb|ADE55297.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] Length = 595 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 82/198 (41%), Gaps = 24/198 (12%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTG--- 303 V + F +L ALE + + PT+ ++ + A F G + + T + TG Sbjct: 339 AVFNADQFNVILSALETLNDTKLVTNPTVVVMNKRPAKFEVGRDYPIREITFNQETGTYE 398 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-------RKA 356 A V GV L TP VL G I L + +P I G + S+ R Sbjct: 399 AGGVEETFIGVELEVTPEVLG-GNIHLDV-----DPTISALDGTVESFGAIDPIVARRSV 452 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALFR--NSRFNREETEIFI 412 DT V + G T+ L GL D Q++ G +P+L IP LG LF + + IFI Sbjct: 453 DTEVIIKDGYTLALGGLA--DTQEVNSGTKVPILGDIPGLGRLFSSDSDSLGKRNLIIFI 510 Query: 413 AATPFLVKPVAMRDLSRP 430 A + RD+ P Sbjct: 511 TAKTLNPEGSDYRDVIDP 528 >gi|31742526|gb|AAK35045.2|AF330136_1 type II protein secretion LspD [Legionella pneumophila 130b] Length = 730 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 113/258 (43%), Gaps = 31/258 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K V++ L+I Q+ ++ +AEV + +G + + +G K F F Sbjct: 429 KTVISQLDIKPA-QLLIEALVAEVDEKDVNNLGIEWG-SNQQTGNPKDFRPGFA------ 480 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299 + K +D F+ ++AL R L+ P++ + + A G Q T S Sbjct: 481 --IINSKTRID--DFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 536 Query: 300 ----SSTGATSVTTHD-YGVVLH-FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350 +T A+ TT D V LH + ++ G+ G+++Q + + + Sbjct: 537 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQ-GIQLQIDQGNDTLDPATATTDNTTT 595 Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ Sbjct: 596 PTFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKR 655 Query: 409 EIFIAATPFLVKPVAMRD 426 + + +KP+ +R+ Sbjct: 656 VLMV-----FIKPIILRN 668 >gi|261257910|ref|ZP_05950443.1| w0022 [Escherichia coli O157:H7 str. FRIK966] Length = 275 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 25/161 (15%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ +L AL ++ LA P++ + A+F T+ G +++ TV Sbjct: 39 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 98 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358 T G+ L P + + L I+ EVS + + ++ R Sbjct: 99 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 149 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + +G T+V+ GLL I+ + +PLL IP+LG LFR Sbjct: 150 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFR 190 >gi|2506491|sp|P31701|GSPD_PECCC RecName: Full=General secretion pathway protein D; AltName: Full=Pectic enzymes secretion protein outD; Flags: Precursor Length = 650 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 34/193 (17%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ ++ AL + LA P++ + A+F T+ G ++++TV Sbjct: 412 NWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERK 471 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKA 356 T G+ L P + + L I+ EVS N G ++ R Sbjct: 472 T---------VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLG--ATFNTRTV 520 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + + Sbjct: 521 NNAVLVSSGDTVVVGGLLDKSTNESANKVPLLGDIPVLGYLFRSNSTETKKRNLML---- 576 Query: 417 FLVKPVAMRDLSR 429 ++P +RD S+ Sbjct: 577 -FIRPSIIRDRSQ 588 >gi|269105039|ref|ZP_06157734.1| type III secretion system outer membrane pore YscC [Photobacterium damselae subsp. damselae CIP 102761] gi|268160674|gb|EEZ39172.1| type III secretion system outer membrane pore YscC [Photobacterium damselae subsp. damselae CIP 102761] Length = 624 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 13/217 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + ++ + ++I ++ + L Q+G G++S D G V+ G + K Sbjct: 291 QSRIEVALSIVDISANDLSQLGVDWRAGIAVGNNSILDIKTTGDVDGGDVTLGSGQTFKS 350 Query: 250 VLDRFSFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 +LD + +L LE + + ++ PTL A + K + A Sbjct: 351 LLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLIGREIAALE 410 Query: 307 VTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 T YG +L P ++ I L + E + ++PS R + T Sbjct: 411 KVT--YGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDNVPSIRKTEISTLAT 468 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G ++++ G+ +D++ +PLL IP LGALF Sbjct: 469 VKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALF 505 >gi|206602610|gb|EDZ39091.1| Putative type II secretion system protein D [Leptospirillum sp. Group II '5-way CG'] Length = 615 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/311 (21%), Positives = 128/311 (41%), Gaps = 41/311 (13%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 +E TLR+ I + + + + TV + G V+ + +QR +++ R+Q + Sbjct: 278 MEGTLRKMIPKATVSADSKAQTVSVKGTVQDVFQAQRYLDIV--------RDQL----RR 325 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V ++IA E +T K + + L F ++ + +G + A GG G Sbjct: 326 EVFFRIDIA-EIDLTDKDAYG-INWNALAHGVFNSTLALTGAGAGNAGLASTGGVTTPYG 383 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295 F V+ ALE + + +P + +SGQ S + G++ + Sbjct: 384 ASFGSAAVI---------QALETIGRVHIINQPYVGTVSGQPVSLNATTDIPYLQGEYPF 434 Query: 296 KTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLR-------IQTEVSEPVIGVNA 345 S+ ++ Y G+ L TPT L +I + +Q V+ + G+ Sbjct: 435 FAGGLSSATETIPQIGYVPVGINLEVTPT-LEGDQIHMHGTVVVNSLQQFVTIDIKGIGT 493 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P R T + G T+V+ GL+ + + +P L +IP+L LF + + Sbjct: 494 FQNPEVNSRSQTTEITARDGQTVVIGGLMANTKNKTFWTVPFLGQIPVLKWLFSGYSYKK 553 Query: 406 EETEIFIAATP 416 + TE+ + TP Sbjct: 554 QVTELVVIITP 564 >gi|42186|emb|CAA49645.1| outD [Pectobacterium carotovorum] Length = 649 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 34/193 (17%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ ++ AL + LA P++ + A+F T+ G ++++TV Sbjct: 411 NWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERK 470 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKA 356 T G+ L P + + L I+ EVS N G ++ R Sbjct: 471 T---------VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLG--ATFNTRTV 519 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + + Sbjct: 520 NNAVLVSSGDTVVVGGLLDKSTNESANKVPLLGDIPVLGYLFRSNSTETKKRNLML---- 575 Query: 417 FLVKPVAMRDLSR 429 ++P +RD S+ Sbjct: 576 -FIRPSIIRDRSQ 587 >gi|45751739|emb|CAF25120.1| InvG protein [Burkholderia pseudomallei] Length = 270 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 46 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 94 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 95 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 152 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 153 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 212 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 213 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 266 >gi|320355296|ref|YP_004196635.1| type II and III secretion system protein [Desulfobulbus propionicus DSM 2032] gi|320123798|gb|ADW19344.1| type II and III secretion system protein [Desulfobulbus propionicus DSM 2032] Length = 586 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 40/216 (18%) Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 DF FVS + + +F+ L+ALE LA P LT ++GQ A + G Sbjct: 382 DFSNTFVS-------RVEIPSLTFDVFLNALEEQGDTHVLANPKLTVLNGQPAIISVGKD 434 Query: 293 HLYKTVSSSTGATSVTTHD-----------YGVVLHFTPTVLSPGRIGLR---IQTEVSE 338 Y + S T T D G+ L ++L ++ L I T+++ Sbjct: 435 VAY--IKSVTREKDSDTEDITYSAEVGNVVQGIALGVMASILDENKVILHLTPITTDLAN 492 Query: 339 -------PVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG- 384 P+ + G+ +P +VR+ T VE+ +G +++ GL+ D I+ K G Sbjct: 493 ATSDGEVPITTIGEGETAMSLGLPQVKVREMSTMVEVENGEMLIIGGLI-DSIEG-KTGA 550 Query: 385 -IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P L IP++ LF ++ E+ I TP ++ Sbjct: 551 FAPGLGSIPVVKYLFGVEEKTLQKRELVILLTPRII 586 >gi|108757430|ref|YP_630733.1| general secretion pathway protein D [Myxococcus xanthus DK 1622] gi|108461310|gb|ABF86495.1| general secretion pathway protein D [Myxococcus xanthus DK 1622] Length = 863 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 40/200 (20%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------- 304 +F VLHA+++++ + L+ P + + A T G +++ + T Sbjct: 516 AFGVVLHAMQQSSDVNVLSTPHILTSDNEEAEITVGQNVPFQSGFNPTSLGSLGAGVGGG 575 Query: 305 -------------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PV 340 +T + + L P + I L I + E PV Sbjct: 576 AGALGGGLLGGLGGLGSLYAPITRQNVELKLTVKPQINESDYIRLVINQQTEEIASTDPV 635 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +G P+ R A TTV T+V+ G+++D + +PLL IP+LG LFR+ Sbjct: 636 LG------PTTSRRSAKTTVIARDQETLVIGGIMQDRTLESVSKVPLLGDIPLLGHLFRD 689 Query: 401 SRFNREETEIFIAATPFLVK 420 + + +T + + TP++++ Sbjct: 690 TTRRKTKTNLLLFLTPYIIR 709 >gi|294670682|ref|ZP_06735557.1| hypothetical protein NEIELOOT_02404 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307570|gb|EFE48813.1| hypothetical protein NEIELOOT_02404 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 711 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 + TP + G+I + I+ A + P ++ +T V + GGT++L G+ + Sbjct: 600 MTVTPNITPDGQIIMDIKINKDSVNSDCRATE-PCINTQRLNTNVMVEDGGTLILGGIYQ 658 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++ + +PLL IP++G LF++ + ++TE+ I TP +V Sbjct: 659 EENSEGVSKVPLLGDIPVVGNLFKSKTRSDKKTELLIFITPRIV 702 >gi|87200666|ref|YP_497923.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87136347|gb|ABD27089.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 748 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 20/222 (9%) Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT------LAEPTLTAISGQSASFTSG 290 K +S G ++ G L S +T L A+ A++T L+ P +T + AS G Sbjct: 474 KLLSARGAYT--GFLTELSKDTYLGAI--INAVQTDKNSNILSTPHITTNNNVPASILFG 529 Query: 291 GQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 + T + +G ++ + G+ L TP + + I L ++ EVS + G Sbjct: 530 QEIPVSTGEALSGGNFSDTFRTIQRQNVGIELDVTPQINASNMIRLDLRQEVSS-IAGTV 588 Query: 345 AGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + V K + TTV + + L GLL D+ Q+ + +PLL IPILG F++ Sbjct: 589 SKTSNELIVNKREIKTTVTVGDREIVALGGLLDDNEQRTLQKVPLLGDIPILGEAFKSRA 648 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +R +T + + P +++ A R + Y V DA+ F Sbjct: 649 RSRVKTNLMVFIRPTILRNAADRQ-ALAARRYGVVRDAQVKF 689 >gi|161502058|ref|YP_001569170.1| hypothetical protein SARI_00075 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863405|gb|ABX20028.1| hypothetical protein SARI_00075 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 563 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 12/193 (6%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 348 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 406 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 YG ++ P + G+I + + E + I + +P T +P G Sbjct: 407 -YGTMIRVLPRFSADGQIEMSLDIEDGNDTTPQTEITASVDALPEVGRTLISTIARVPHG 465 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +D + IP L KIP +G LFR S N+ FL++P + Sbjct: 466 KSLLVGGYTRDANTDTVQSIPFLGKIPFIGGLFRYSSKNKSNV-----VRVFLIEPKEIV 520 Query: 426 DLSRPDDHYSVED 438 D PD SV + Sbjct: 521 DPLTPDASESVNN 533 >gi|45751675|emb|CAF21321.1| InvG protein [Burkholderia mallei NCTC 10247] Length = 272 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 48 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 96 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 97 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 154 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 155 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 214 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 215 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 268 >gi|148241667|ref|YP_001226824.1| Type II secretory pathway, component PulD [Synechococcus sp. RCC307] gi|147849977|emb|CAK27471.1| Type II secretory pathway, component PulD [Synechococcus sp. RCC307] Length = 760 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 41/188 (21%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + AL R+++ + +A+PTL +S+S G ++ SSST A Sbjct: 558 FFDFVKALIRSSSAKVVADPTLLVQESESSSVGVG-TTVFVNCSSSTSANGTR------- 609 Query: 316 LHFTPTVLSPGRIGLRIQTEVSE------------PV--------IGVNAG--DMPSY-- 351 +FTP + GL++ VS PV + VN G D+P+ Sbjct: 610 -NFTPKKET---AGLQVDVSVSRIDDNGFVSLALNPVLKAPSGLPVPVNCGGIDLPTRDL 665 Query: 352 ---RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 +R + V G T++L G++++++ + + PLL +P++G FR S R++ Sbjct: 666 AVRELRSGEFRVR--DGQTLILTGVIQEEVLESVDKWPLLGDVPLIGQFFRKSSNTRQKR 723 Query: 409 EIFIAATP 416 E+ I TP Sbjct: 724 ELVIVVTP 731 >gi|94969024|ref|YP_591072.1| type II and III secretion system protein [Candidatus Koribacter versatilis Ellin345] gi|94551074|gb|ABF40998.1| type II and III secretion system protein [Candidatus Koribacter versatilis Ellin345] Length = 764 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 12/163 (7%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----------DYGVVLHFT 319 + + P++ A+ GQ A+ G + T S G V + D GV + T Sbjct: 406 KLIQNPSIRAVDGQKATLKIGDRIPVATGSFQPGIGGVGINPLVNTQFNYIDVGVNIDIT 465 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + + + +++ +VS N G + P+ RK + + L G +L G+L+ + Sbjct: 466 PRIHANNEVSMKLVLDVSSVTGYQNIGGIQQPTIGQRKIEHEIRLKDGEINLLGGILQSE 525 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G+P LS+IP+L F + ++E+ P +V+ Sbjct: 526 DDKTIAGLPYLSQIPLLRYFFSTDNKTKSDSEVVFVVIPHIVR 568 >gi|114321906|ref|YP_743589.1| type IV pilus secretin PilQ [Alkalilimnicola ehrlichii MLHE-1] gi|114228300|gb|ABI58099.1| type IV pilus secretin PilQ [Alkalilimnicola ehrlichii MLHE-1] Length = 694 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E ++ P + + + A+ G + Y+ ++S GAT+V + + L T Sbjct: 527 LSAMETEGRGEVISSPRVITANQREANIRQGVEIPYQEETAS-GATNVEFKEAVLGLTVT 585 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + R+ + + EVS +G +PS + T V + +G T+VL G+ + Sbjct: 586 PQITPDDRVIMNL--EVSNDTVGEVFAGVPSIDTQSVTTQVLVDNGETVVLGGVYERASG 643 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P +P +G LFRN E++E+ + TP ++ Sbjct: 644 EQTRRVPFFGSLPGVGWLFRNRLTFDEQSELLVFVTPRIL 683 >gi|78049053|ref|YP_365228.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037483|emb|CAJ25228.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 649 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 3/108 (2%) Query: 316 LHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L TPT+ + R+ L + + EV+ +I G +P R+ +T V + G T+V+ G Sbjct: 536 LKVTPTITNDNRVFLNMNVKKDEVARFIILEGYGTVPEINRREVNTAVLVGDGETVVIGG 595 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 596 VYEFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 643 >gi|53722566|ref|YP_111551.1| Type III secretion system protein [Burkholderia pseudomallei K96243] gi|52212980|emb|CAH39018.1| Type III secretion system protein [Burkholderia pseudomallei K96243] Length = 620 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 363 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 411 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 412 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 469 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 470 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 529 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 530 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 583 >gi|307260659|ref|ZP_07542351.1| hypothetical protein appser12_2340 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869736|gb|EFN01521.1| hypothetical protein appser12_2340 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 432 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 1/162 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + +A P L + + AS G + Y + ++ + + L T Sbjct: 254 LTALEQENNVEIIASPRLLTTNKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVT 313 Query: 320 PTVLSPGRIGLR-IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + + +I L + T+ S G + + ++ +T V G TIVL G+ + Sbjct: 314 PHISNDKKILLDLVVTQNSPNSTGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLT 373 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +P+L IP+L LF +S + E+ I TP++VK Sbjct: 374 AKGEDRVPILGSIPVLKKLFSHSSDKISKRELVIFVTPYIVK 415 >gi|294627095|ref|ZP_06705683.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598528|gb|EFF42677.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 649 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 3/108 (2%) Query: 316 LHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L TPT+ + R+ L + + EV+ +I G +P R+ +T V + G T+V+ G Sbjct: 536 LKVTPTITNDNRVFLNMNVKKDEVARFIILEGYGTVPEINRREVNTAVLVGDGETVVIGG 595 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 596 VYEFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 643 >gi|124514518|gb|EAY56031.1| putative type II secretion system protein D [Leptospirillum rubarum] Length = 610 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/311 (21%), Positives = 128/311 (41%), Gaps = 41/311 (13%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 +E TLR+ I + + + + TV + G V+ + +QR +++ R+Q + Sbjct: 273 MEGTLRKMIPKATVSADSKAQTVSVKGTVQDVFQAQRYLDIV--------RDQL----RR 320 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V ++IA E +T K + + L F ++ + +G + A GG G Sbjct: 321 EVFFRIDIA-EIDLTDKDAYG-INWNALAHGVFNSTLALTGAGAGNAGLASTGGVTTPYG 378 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLY 295 F V+ ALE + + +P + +SGQ S + G++ + Sbjct: 379 ASFGSAAVI---------QALETIGRVHIINQPYVGTVSGQPVSLNATTDIPYLQGEYPF 429 Query: 296 KTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLR-------IQTEVSEPVIGVNA 345 S+ ++ Y G+ L TPT L ++ + +Q V+ + G+ Sbjct: 430 FAGGLSSATETIPQIGYVPVGINLEVTPT-LEGDQVHMHGTVVVNSLQQFVTIDIKGIGT 488 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P R T + G T+V+ GL+ + + +P L +IP+L LF + + Sbjct: 489 FQNPEVNSRSQTTEITARDGQTVVIGGLMANTKNKTFWSVPFLGQIPVLKWLFSGYSYKK 548 Query: 406 EETEIFIAATP 416 + TE+ + TP Sbjct: 549 QVTELVVIITP 559 >gi|67639552|ref|ZP_00438400.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei GB8 horse 4] gi|238520110|gb|EEP83573.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei GB8 horse 4] Length = 380 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 219 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 275 Query: 319 TPTVLSPG-----RIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P V+ G ++ +RI E+S+ + ++P + +T + G +++AG Sbjct: 276 LPMVVDEGGCTQIKLDVRIVDGELSQQTVD----NIPVIVSNEINTQAFIEQGQALLIAG 331 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P++GALFR++ +E TP +++P Sbjct: 332 YKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 380 >gi|10955572|ref|NP_052413.1| secretin YscC [Yersinia enterocolitica] gi|332163594|ref|YP_004424936.1| putative type III secretion protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|267564|sp|Q01244|YSCC_YEREN RecName: Full=Yop proteins translocation protein C; Flags: Precursor gi|155552|gb|AAC37020.1| yscC [Yersinia enterocolitica] gi|4324359|gb|AAD16836.1| secretin YscC [Yersinia enterocolitica W22703] gi|318608189|emb|CBY78163.1| type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) [Yersinia enterocolitica subsp. palearctica Y11] gi|325667824|gb|ADZ44467.1| putative type III secretion protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 607 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 13/227 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 ++ + ++I ++ D L ++G + G +G + G + + ++ ++D Sbjct: 281 RIEVALSIVDINADQLTELGVDWRV-GIRTGNNHQVVIKTTGDQSNIASNGALGSLVDAR 339 Query: 255 SFETVL---HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + +L + LE + + ++ PTL A + K T Sbjct: 340 GLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSETYYVKVTGKEVAELKGIT-- 397 Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG +L TP VL+ G + L I+ +P G +P+ DT + G Sbjct: 398 YGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEG-IPTISRTVVDTVARVGHGQ 456 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412 ++++ G+ +D++ +PLL IP +GALF R S R +FI Sbjct: 457 SLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELTRRTVRLFI 503 >gi|399792|sp|P31700|GSPD1_ERWCH RecName: Full=General secretion pathway protein D; AltName: Full=Pectic enzymes secretion protein outD; Flags: Precursor gi|148434|gb|AAA24831.1| secretory component [Erwinia chrysanthemi] Length = 712 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 14/183 (7%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------S 306 R ++ +L AL LA P++ + A+F G + T S +T + + Sbjct: 474 RGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQTTVGSGDNIFNT 533 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELP 363 V G+ L P + + L+I+ EVS G + + ++ R + V + Sbjct: 534 VERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNGSSNSSLGVTFNTRTVNNAVMVT 593 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + T+V+ GLL + +PLL IP LG+LFR+ + + + ++P Sbjct: 594 NRETVVVGGLLDKTAIETNNKVPLLGDIPWLGSLFRSKTQTMSKRNLML-----FLRPTI 648 Query: 424 MRD 426 +RD Sbjct: 649 IRD 651 >gi|294651771|ref|ZP_06729069.1| type IV pilus assembly protein [Acinetobacter haemolyticus ATCC 19194] gi|292822328|gb|EFF81233.1| type IV pilus assembly protein [Acinetobacter haemolyticus ATCC 19194] Length = 725 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 9/181 (4%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L F + L A++ ++ P + Q A SG + Y SSSTGA + Sbjct: 548 LSDFMLDLELSAVQADGYGEVISTPKVMTADKQPAKIESGTKIPY---SSSTGAGANAVP 604 Query: 311 -----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 D + L TP++ G++ +++ P G + + DT V + +G Sbjct: 605 KTEFIDATLSLDVTPSITPDGKVMMKLNITKDAPSNPTPTGQL-TISKNSIDTNVLVDNG 663 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T+VL G+ + + + +P L +P +G LFR + E+ I TP +V R Sbjct: 664 ETVVLGGIFEQENISSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTR 723 Query: 426 D 426 + Sbjct: 724 N 724 >gi|213865044|ref|ZP_03387163.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 501 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 286 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 344 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 345 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 401 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP+L K+P++G+LFR S N+ F+++P Sbjct: 402 HGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 456 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 457 IVDPLTPDASESVNN 471 >gi|213425700|ref|ZP_03358450.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 505 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 290 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 348 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 349 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 405 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP+L K+P++G+LFR S N+ F+++P Sbjct: 406 HGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 460 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 461 IVDPLTPDASESVNN 475 >gi|45751679|emb|CAF21323.1| InvG protein [Burkholderia mallei] Length = 278 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 52 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 100 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 101 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 158 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 159 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 218 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 219 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 272 >gi|254264759|ref|ZP_04955624.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] gi|254215761|gb|EET05146.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] Length = 620 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 363 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 411 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 412 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 469 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 470 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 529 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 530 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 583 >gi|259982|gb|AAB24178.1| OutD=pectic enzyme secretion protein [Erwinia chrysanthemi, Peptide, 712 aa] Length = 712 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 14/183 (7%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------S 306 R ++ +L AL LA P++ + A+F G + T S +T + + Sbjct: 474 RGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQTTVGSGDNIFNT 533 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELP 363 V G+ L P + + L+I+ EVS G + + ++ R + V + Sbjct: 534 VERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNGSSNSSLGVTFNTRTVNNAVMVT 593 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + T+V+ GLL + +PLL IP LG+LFR+ + + + ++P Sbjct: 594 NRETVVVGGLLDKTAIETNNKVPLLGDIPWLGSLFRSKTQTMSKRNLML-----FLRPTI 648 Query: 424 MRD 426 +RD Sbjct: 649 IRD 651 >gi|224584676|ref|YP_002638474.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469203|gb|ACN47033.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 532 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 317 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 375 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 376 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 432 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 433 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 487 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 488 IVDPLTPDASESVNN 502 >gi|149197164|ref|ZP_01874216.1| secretion protein XqhA [Lentisphaera araneosa HTCC2155] gi|149139710|gb|EDM28111.1| secretion protein XqhA [Lentisphaera araneosa HTCC2155] Length = 738 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 37/281 (13%) Query: 166 TFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 T S RNQ + K +++ A QV ++VT EV + GF+++ Sbjct: 435 TIFEDSRRNQLVIRTKPKTYSMVKAILRHLDAPAMQVMIQVTAVEVELGEGLEFGFEYAA 494 Query: 220 T--------------GSSSGPSKSFAADFGGKFVSEGGDFSVK--GVLDRFSFETVLHAL 263 T GSS+ + SF G + G ++ GV + F+F + A+ Sbjct: 495 TDKFGSGDNESGVGVGSSTADTPSFGPPGG---LDPGISLLLQSAGVDNEFAF---VQAV 548 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----VTTHDYGVVLHFT 319 ++ L P + ++G+ A G + ++ST + + + GV+L Sbjct: 549 AGDSSSELLFTPHILTLNGEEAEINIGQNVPVRAGTTSTSSNNDFEQIEYRSTGVLLRVL 608 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V + + L + +S V D PS+ K T + + + TI+L G+++ Sbjct: 609 PQVSADKYVTLDTEIVISSIVEQSPEEVLIDSPSFNENKVTTKLLIKNNETILLGGIIQK 668 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETE--IFIAAT 415 + G+P L IP +G LF+++ E E IFI AT Sbjct: 669 VASESTSGVPFLKDIPGIGFLFQSATTGSREKELVIFIKAT 709 >gi|312602771|ref|YP_004022616.1| type III secretion outer membrane pore SctC [Burkholderia rhizoxinica HKI 454] gi|306431574|emb|CBK52126.1| type III secretion outer membrane pore SctC [Burkholderia rhizoxinica HKI 454] gi|312170085|emb|CBW77097.1| type III secretion outer membrane pore SctC [Burkholderia rhizoxinica HKI 454] Length = 645 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/250 (24%), Positives = 97/250 (38%), Gaps = 29/250 (11%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGD--- 244 V ++ I EV D LKQIG TG+ S+ F S D Sbjct: 399 VEIEAHIIEVDDDALKQIGVDWRAHNSHVDLQTGNGLHSPSSYDGTLNPTFTSNSSDGTT 458 Query: 245 -----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +V G R+ V AL+ A R A P + +S A + Sbjct: 459 VISTAPLGASLTAVLGNAGRYLLARV-DALQSANLARIDASPKVATLSNAEAVMDHKTRF 517 Query: 294 LYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGD-MPS 350 + +S SV+T GV L P V+ GR ++++ + + + D +P Sbjct: 518 FVRVAGYTSADLYSVST---GVSLRVRPLVVEEDGRTRIKLEVHIEDGQVTNQLVDHIPV 574 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +T + ++++AG D L+ GIPLLSKIP++G LFR R E Sbjct: 575 ITTSTINTEAFVGQNESLLIAGYRTDSSSNLETGIPLLSKIPLIGGLFRYRSDQRSHMER 634 Query: 411 FIAATPFLVK 420 +P +++ Sbjct: 635 IFLLSPRIIE 644 >gi|194445131|ref|YP_002042139.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194470942|ref|ZP_03076926.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248412|ref|YP_002147795.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243599|ref|YP_002216867.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205356993|ref|ZP_02344010.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205358415|ref|ZP_02656026.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194403794|gb|ACF64016.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194457306|gb|EDX46145.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197212115|gb|ACH49512.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197938115|gb|ACH75448.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205324767|gb|EDZ12606.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205334513|gb|EDZ21277.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|321223445|gb|EFX48511.1| Protein InvG precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 514 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 299 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 357 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 358 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 414 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 415 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 469 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 470 IVDPLTPDASESVNN 484 >gi|205359783|ref|ZP_02832405.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342787|gb|EDZ29551.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 556 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 341 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 399 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 400 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 456 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 457 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 511 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 512 IVDPLTPDASESVNN 526 >gi|16761675|ref|NP_457292.1| virulence associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143159|ref|NP_806501.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052440|ref|ZP_03345318.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213612699|ref|ZP_03370525.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|25512784|pir||AF0852 secretory protein (associated with virulence) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503976|emb|CAD06005.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138792|gb|AAO70361.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 562 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP+L K+P++G+LFR S N+ F+++P Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 518 IVDPLTPDASESVNN 532 >gi|254522174|ref|ZP_05134229.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14] gi|219719765|gb|EED38290.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14] Length = 638 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 7/174 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-TGATSVTTHDY 312 + + L A++ ++ P + + + A G + Y T+S TG + + Sbjct: 460 YLLDVELSAMQEEARGEVISNPRVVTTNQREALIKQGKEIGYVTISGGGTGGVATPNVQF 519 Query: 313 GVV---LHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V L TPT+ + R+ L +Q EV + G +P R+ +T V + G Sbjct: 520 KEVVLELKVTPTITNDNRVFLNMQLKKDEVERLIQLQGYGTVPEINRREVNTAVLVDDGQ 579 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ G+ + + +P L +P LG LF+ ++++ E+ + TP +++ Sbjct: 580 TVVIGGVYEFTDRSSVSKVPFLGDVPFLGNLFKKRGRSKDKAELLVFVTPKVLR 633 >gi|197263182|ref|ZP_03163256.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205360510|ref|ZP_02683952.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197241437|gb|EDY24057.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205349182|gb|EDZ35813.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 514 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 299 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 357 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 358 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 414 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 415 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 469 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 470 IVDPLTPDASESVNN 484 >gi|126457615|ref|YP_001076120.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1106a] gi|226195991|ref|ZP_03791577.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|242310941|ref|ZP_04809958.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] gi|254186863|ref|ZP_04893379.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|126231383|gb|ABN94796.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106a] gi|157934547|gb|EDO90217.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|225931884|gb|EEH27885.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|242134180|gb|EES20583.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] Length = 625 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 368 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 416 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 417 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 474 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 475 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 534 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 535 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 588 >gi|195873613|ref|ZP_02697884.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633590|gb|EDX52004.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 514 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 299 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 357 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 358 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 414 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 415 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 469 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 470 IVDPLTPDASESVNN 484 >gi|194736395|ref|YP_002115850.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197300771|ref|ZP_02660996.2| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194711897|gb|ACF91118.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290685|gb|EDY30039.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 514 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 299 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 357 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 358 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 414 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 415 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 469 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 470 IVDPLTPDASESVNN 484 >gi|254301448|ref|ZP_04968892.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|157811001|gb|EDO88171.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] Length = 625 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 368 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 416 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 417 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 474 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 475 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 534 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 535 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 588 >gi|217425200|ref|ZP_03456695.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] gi|217391805|gb|EEC31832.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] Length = 624 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 367 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 415 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 416 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 473 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 474 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 533 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 534 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 587 >gi|200387736|ref|ZP_03214348.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928222|ref|ZP_03219422.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|199604834|gb|EDZ03379.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322544|gb|EDZ07741.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 514 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 299 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 357 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 358 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 414 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 415 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 469 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 470 IVDPLTPDASESVNN 484 >gi|53716325|ref|YP_106133.1| type III secretion system protein BsaO [Burkholderia mallei ATCC 23344] gi|52422295|gb|AAU45865.1| type III secretion system protein BsaO [Burkholderia mallei ATCC 23344] Length = 606 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 349 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 397 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 398 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 455 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 456 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 515 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 516 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 569 >gi|83747847|ref|ZP_00944880.1| HrcC [Ralstonia solanacearum UW551] gi|207739230|ref|YP_002257623.1| hrp protein hrcc [Ralstonia solanacearum IPO1609] gi|83725494|gb|EAP72639.1| HrcC [Ralstonia solanacearum UW551] gi|206592603|emb|CAQ59509.1| hrp conserved protein hrcc [Ralstonia solanacearum IPO1609] Length = 567 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + AL++ R A P + + A + Q+ Y V+ A + GV L Sbjct: 406 ISALQQTNQARVTASPKVATLDNTEAVMDNR-QNFYVPVAGYQSA-DLYAISAGVSLRVL 463 Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ G RI + + E + + G++P + DT + G ++++AG D Sbjct: 464 PMVVMDGGTVRIRMNVHIEDGQ-ITSQQVGNLPVTSQSEIDTQALINEGESLLIAGYSVD 522 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + IP LSKIP++GALFR + + + TP ++ P Sbjct: 523 QQAKTVDAIPGLSKIPLVGALFRTDQTTGQRFQRMFLVTPRVITP 567 >gi|253689235|ref|YP_003018425.1| general secretion pathway protein D [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755813|gb|ACT13889.1| general secretion pathway protein D [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 640 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 38/210 (18%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ ++ AL + LA P++ + A+F T+ G ++++TV Sbjct: 402 NWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERK 461 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKA 356 T G+ L P + + L I+ EVS N G ++ R Sbjct: 462 T---------VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLG--ATFNTRTV 510 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + + Sbjct: 511 NNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSQETKKRNLML---- 566 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 ++P +RD S Y +K FN Sbjct: 567 -FIRPSIIRDRS----QYQSASASKYHSFN 591 >gi|205357926|ref|ZP_02574228.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205328766|gb|EDZ15530.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 556 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 341 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 399 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 400 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 456 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 457 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 511 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 512 IVDPLTPDASESVNN 526 >gi|167743212|ref|ZP_02415986.1| Type III secretion system protein [Burkholderia pseudomallei 14] Length = 309 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 52 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 100 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 101 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 158 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 159 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 218 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 219 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 272 >gi|67639412|ref|ZP_00438272.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei GB8 horse 4] gi|124382842|ref|YP_001025856.1| type III secretion system protein BsaO [Burkholderia mallei NCTC 10229] gi|126445673|ref|YP_001077941.1| type III secretion system protein BsaO [Burkholderia mallei NCTC 10247] gi|254175971|ref|ZP_04882629.1| type III secretion system protein BsaO [Burkholderia mallei ATCC 10399] gi|254359082|ref|ZP_04975354.1| type III secretion system protein BsaO [Burkholderia mallei 2002721280] gi|126238527|gb|ABO01639.1| type III secretion system protein BsaO [Burkholderia mallei NCTC 10247] gi|148028269|gb|EDK86229.1| type III secretion system protein BsaO [Burkholderia mallei 2002721280] gi|160697013|gb|EDP86983.1| type III secretion system protein BsaO [Burkholderia mallei ATCC 10399] gi|238519949|gb|EEP83414.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei GB8 horse 4] Length = 625 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 368 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 416 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 417 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 474 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 475 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 534 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 535 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 588 >gi|161615810|ref|YP_001589775.1| hypothetical protein SPAB_03601 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365174|gb|ABX68942.1| hypothetical protein SPAB_03601 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 553 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 338 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 396 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 397 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 453 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 454 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 508 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 509 IVDPLTPDASESVNN 523 >gi|83720458|ref|YP_443762.1| phage-related secreted protein [Burkholderia thailandensis E264] gi|83654283|gb|ABC38346.1| probable phage-related secreted protein YPO2280 [Burkholderia thailandensis E264] Length = 460 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 16/188 (8%) Query: 214 GFQHSITGS-SSGPSKSFAAD-FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATA 268 G+ + +T + S+ + S AA GG+ GD S RF+ + + AL + Sbjct: 251 GWAYEVTNTDSTNSAWSIAAKVLGGQLRISSGDTSSDKSAVRFTGPGIDAAISALNADSR 310 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVL 323 + ++ P + SG+ G Q ++ SS T S+T D G++ PTV+ Sbjct: 311 FKVISSPHVRIASGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVM 370 Query: 324 SPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I LR+ E+S+ V GV+ P+ R+ T L G +VL GL++D Sbjct: 371 RDA-IELRVHEEISDFVPTKTGVDTS--PTKNTRQLQTVTRLTDGEVVVLGGLIQDRNST 427 Query: 381 LKEGIPLL 388 + G L Sbjct: 428 ARSGYAWL 435 >gi|322614284|gb|EFY11215.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621652|gb|EFY18505.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624513|gb|EFY21346.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628844|gb|EFY25627.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633429|gb|EFY30171.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635995|gb|EFY32703.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639703|gb|EFY36388.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322650654|gb|EFY47059.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654733|gb|EFY51052.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658954|gb|EFY55207.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664479|gb|EFY60673.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668272|gb|EFY64429.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673748|gb|EFY69849.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677809|gb|EFY73872.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681361|gb|EFY77393.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683763|gb|EFY79773.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193848|gb|EFZ79051.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200318|gb|EFZ85400.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205574|gb|EFZ90539.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210085|gb|EFZ94988.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216388|gb|EGA01115.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221135|gb|EGA05566.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226957|gb|EGA11139.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230759|gb|EGA14877.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234890|gb|EGA18976.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238929|gb|EGA22979.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241629|gb|EGA25660.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248224|gb|EGA32160.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251192|gb|EGA35065.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256076|gb|EGA39814.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263211|gb|EGA46749.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264286|gb|EGA47792.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271112|gb|EGA54540.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 562 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 518 IVDPLTPDASESVNN 532 >gi|194448425|ref|YP_002046858.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359156|ref|ZP_02667567.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194406729|gb|ACF66948.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338023|gb|EDZ24787.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 556 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 341 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 399 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 400 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 456 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 457 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 511 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 512 IVDPLTPDASESVNN 526 >gi|237508896|ref|ZP_04521611.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] gi|254185160|ref|ZP_04891749.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] gi|184215752|gb|EDU12733.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] gi|235001101|gb|EEP50525.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] Length = 625 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 368 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 416 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 417 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 474 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 475 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 534 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 535 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 588 >gi|205353841|ref|YP_002227642.1| virulence associated secretory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273622|emb|CAR38609.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628950|gb|EGE35293.1| Protein invG [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 562 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 518 IVDPLTPDASESVNN 532 >gi|196233728|ref|ZP_03132568.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] gi|196222242|gb|EDY16772.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] Length = 621 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 6/116 (5%) Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDM---PSYRVRKADTTVELPS 364 ++G L TP++ I + +Q E+S V +G P R D+ V + S Sbjct: 430 EFGNTLIVTPSINKDDFISMSVQPEISNKVADATFTFSGATVTSPVIDKRTLDSNVVIKS 489 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+ + GLL+D++ + + +P++ IPILG F+ R + + I TP ++K Sbjct: 490 GDTLAIGGLLQDEVTKGRTKVPVIGDIPILGYAFQERLNVRTKRNLLIFVTPTIIK 545 >gi|56414850|ref|YP_151925.1| virulence secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363778|ref|YP_002143415.1| virulence secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129107|gb|AAV78613.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095255|emb|CAR60806.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 562 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 518 IVDPLTPDASESVNN 532 >gi|126442335|ref|YP_001063169.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 668] gi|126221826|gb|ABN85331.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 668] Length = 617 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 360 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 408 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 409 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 466 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 467 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 526 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 527 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 580 >gi|238909665|ref|ZP_04653502.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 562 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 518 IVDPLTPDASESVNN 532 >gi|62181400|ref|YP_217817.1| invasion protein; outer membrane [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129033|gb|AAX66736.1| invasion protein; outer membrane [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715884|gb|EFZ07455.1| invasion protein; outer membrane [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 562 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 518 IVDPLTPDASESVNN 532 >gi|320087303|emb|CBY97068.1| Protein invG Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 562 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 518 IVDPLTPDASESVNN 532 >gi|134282090|ref|ZP_01768796.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] gi|134246619|gb|EBA46707.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] Length = 625 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 368 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 416 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 417 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 474 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 475 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 534 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 535 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 588 >gi|153003602|ref|YP_001377927.1| general secretion pathway protein D [Anaeromyxobacter sp. Fw109-5] gi|152027175|gb|ABS24943.1| general secretion pathway protein D [Anaeromyxobacter sp. Fw109-5] Length = 892 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 1/105 (0%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L P + G I L I+ E +E ++ + P+ R A T + TIV+ GL++ Sbjct: 640 LKIKPQINEGGNIRLTIE-EQTEEIVDRDPQLGPTTAKRTAKTQIVAKDQSTIVIGGLIQ 698 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + IP+L +PILG LFR+S ++ T + + TP++++ Sbjct: 699 ERNVRSVRKIPVLGSLPILGWLFRDSTNTKQRTNLLLFLTPYIIR 743 >gi|474942|emb|CAA53049.1| invG [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 562 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 518 IVDPLTPDASESVNN 532 >gi|171911301|ref|ZP_02926771.1| type II and III secretion system protein [Verrucomicrobium spinosum DSM 4136] Length = 173 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%) Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 N + P + RK T V + G T+ + GL+++D+Q +++ +P+L +P LG LF++ Sbjct: 57 NKIEQPVFSTRKVTTAVTVWDGQTVAMGGLIREDVQDVEDKVPILGDLPFLGRLFQSKAE 116 Query: 404 NREETEIFIAATPFLVKP 421 + + + I T L+ P Sbjct: 117 DHFKRNLMILVTAKLIDP 134 >gi|126207688|ref|YP_001052913.1| type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae L20] gi|165975656|ref|YP_001651249.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149472|ref|YP_001967997.1| type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307258421|ref|ZP_07540162.1| hypothetical protein appser11_2240 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|126096480|gb|ABN73308.1| type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875757|gb|ABY68805.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914603|gb|ACE60855.1| type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306867605|gb|EFM99452.1| hypothetical protein appser11_2240 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 432 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 1/162 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + +A P L + + AS G + Y + ++ + + L T Sbjct: 254 LTALEQENNVEIIASPRLLTTNKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVT 313 Query: 320 PTVLSPGRIGLR-IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + + +I L + T+ S G + + ++ +T V G TIVL G+ + Sbjct: 314 PHISNDKQILLDLVVTQNSPNSTGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLT 373 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +P+L IP+L LF +S + E+ I TP++VK Sbjct: 374 AKGEDRVPILGSIPVLKKLFSHSSDKISKRELVIFVTPYIVK 415 >gi|254293816|ref|YP_003059839.1| general secretion pathway protein D [Hirschia baltica ATCC 49814] gi|254042347|gb|ACT59142.1| general secretion pathway protein D [Hirschia baltica ATCC 49814] Length = 660 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 13/177 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTT 309 F +++A++ L+ P L + + AS T G Q + T + G +V Sbjct: 447 FGAIINAVDSDITSNVLSTPHLLTMDNEKASITVG-QEVPITTGEALGTNNSNPFRTVER 505 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 GV L P + I L ++ EVS ++ D + R+ +TT+ G +V Sbjct: 506 KPLGVTLEVEPQIGEGDSIKLNLRQEVSSIFDSIDGTDFITNN-REINTTILADDGEIVV 564 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL++++ +PLL IP +G LF + ++ T + + +KP +RD Sbjct: 565 LGGLIQEEETLNISKVPLLGDIPGVGRLFSSEGTTKKRTNLMV-----FLKPTIVRD 616 >gi|148652211|ref|YP_001279304.1| type IV pilus secretin PilQ [Psychrobacter sp. PRwf-1] gi|148571295|gb|ABQ93354.1| type IV pilus secretin PilQ [Psychrobacter sp. PRwf-1] Length = 642 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 5/162 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A++ ++ P + + Q+A+ +SG + Y++ S G T+ + + L T Sbjct: 483 LSAMQAEGRGEVISTPKILTLDKQTATVSSGTKIPYQS-ESEGGGTTTQFEEALLSLQVT 541 Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P++ +I L++ E P +G + + R+ T V + G T+VL G+ ++ I Sbjct: 542 PSITPEDKISLQLNIENGRPNPVGNGVILIDTDRLI---TRVTVGDGQTLVLGGIYRNQI 598 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +P +P +G LF+ ++ E+ I TP L++ Sbjct: 599 FNNTQKVPFFGDLPYIGRLFKQDLRRNDQQELLIFVTPKLMQ 640 >gi|16766204|ref|NP_461819.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|207858160|ref|YP_002244811.1| secretory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|20141547|sp|P35672|INVG_SALTY RecName: Full=Protein invG; Flags: Precursor gi|16421446|gb|AAL21778.1| outer membrane invasion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|206709963|emb|CAR34317.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248034|emb|CBG25867.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995026|gb|ACY89911.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159457|emb|CBW18975.1| type III secretion system secretory apparatus [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913916|dbj|BAJ37890.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323131250|gb|ADX18680.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326624629|gb|EGE30974.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332989770|gb|AEF08753.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 562 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 462 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 517 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 518 IVDPLTPDASESVNN 532 >gi|53728904|ref|ZP_00134621.2| COG4796: Type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|303250734|ref|ZP_07336930.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252023|ref|ZP_07338194.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649453|gb|EFL79638.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650404|gb|EFL80564.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 417 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 1/162 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + +A P L + + AS G + Y + ++ + + L T Sbjct: 239 LTALEQENNVEIIASPRLLTTNKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVT 298 Query: 320 PTVLSPGRIGLR-IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + + +I L + T+ S G + + ++ +T V G TIVL G+ + Sbjct: 299 PHISNDKQILLDLVVTQNSPNSTGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLT 358 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +P+L IP+L LF +S + E+ I TP++VK Sbjct: 359 AKGEDRVPILGSIPVLKKLFSHSSDKISKRELVIFVTPYIVK 400 >gi|307247187|ref|ZP_07529238.1| hypothetical protein appser2_1870 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249414|ref|ZP_07531405.1| hypothetical protein appser4_2250 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251732|ref|ZP_07533636.1| hypothetical protein appser6_2530 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253966|ref|ZP_07535818.1| hypothetical protein appser9_2240 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256227|ref|ZP_07538014.1| hypothetical protein appser10_2320 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262791|ref|ZP_07544418.1| hypothetical protein appser13_2170 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306856325|gb|EFM88477.1| hypothetical protein appser2_1870 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858556|gb|EFM90621.1| hypothetical protein appser4_2250 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860818|gb|EFM92827.1| hypothetical protein appser6_2530 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863170|gb|EFM95112.1| hypothetical protein appser9_2240 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865408|gb|EFM97304.1| hypothetical protein appser10_2320 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871936|gb|EFN03653.1| hypothetical protein appser13_2170 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 429 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 1/162 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + +A P L + + AS G + Y + ++ + + L T Sbjct: 251 LTALEQENNVEIIASPRLLTTNKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVT 310 Query: 320 PTVLSPGRIGLR-IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + + +I L + T+ S G + + ++ +T V G TIVL G+ + Sbjct: 311 PHISNDKQILLDLVVTQNSPNSTGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLT 370 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +P+L IP+L LF +S + E+ I TP++VK Sbjct: 371 AKGEDRVPILGSIPVLKKLFSHSSDKISKRELVIFVTPYIVK 412 >gi|116620720|ref|YP_822876.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223882|gb|ABJ82591.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 527 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 8/154 (5%) Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P LT+ SFT+G ++ T S T D G+ L TP V + L I + Sbjct: 367 PVLTSGYYGPQSFTNGA-------NAYTPPPSFTFEDLGLTLKITPAVHGTESVTLDIDS 419 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 E + G + +P R + +L G +AGL+ D + GI +S++P+L Sbjct: 420 EFKV-LAGGSVNGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPVL 478 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 G L N++E+++ I P L+ P + LS Sbjct: 479 GQLTSTHTRNKDESQVLILMRPRLLTPPPGQALS 512 >gi|261820712|ref|YP_003258818.1| general secretion pathway protein D [Pectobacterium wasabiae WPP163] gi|261604725|gb|ACX87211.1| general secretion pathway protein D [Pectobacterium wasabiae WPP163] Length = 640 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 30/190 (15%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ ++ AL + LA P++ + A+F T+ G ++++TV Sbjct: 402 NWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERK 461 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADT 358 T G+ L P + + L I+ EVS ++ ++ R + Sbjct: 462 T---------VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSAELGATFNTRTVNN 512 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + SG T+V+ GLL ++ +PLL IPILG LFR++ + + + Sbjct: 513 AVLVSSGETVVVGGLLDKSTRESASKVPLLGDIPILGHLFRSNSQETSKRNLML-----F 567 Query: 419 VKPVAMRDLS 428 ++P +RD S Sbjct: 568 IRPSIIRDRS 577 >gi|153212013|ref|ZP_01947830.1| VcsC2 [Vibrio cholerae 1587] gi|124116809|gb|EAY35629.1| VcsC2 [Vibrio cholerae 1587] Length = 461 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 83/212 (39%), Gaps = 6/212 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLD 252 D+V L IA + +Q+ F + S+ + F D S G D V + Sbjct: 233 DEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGIYDLVVPPFTE 292 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F AL R + E L + Q F +S+ T D Sbjct: 293 TTDFLRNFQALTSNGIARGVYETNLLVLENQQGHFGKKQTATIALISNRQVETQKIEADN 352 Query: 313 GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 L+ T +L G + RIQ + + N+ P + ++ V + G TI+ Sbjct: 353 S--LYVTGRLLPSGDVQARIQYIEESLDDDKESDNSNRPPKVSSQSLNSEVYIKPGQTII 410 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 L G QQ+K GIP+LS IP+LG LF+++ Sbjct: 411 LGGFDNTVTQQMKSGIPVLSSIPLLGELFKST 442 >gi|322646886|gb|EFY43389.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|323203179|gb|EFZ88208.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 456 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 241 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 299 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 300 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 356 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L K+P++G+LFR S N+ F+++P Sbjct: 357 HGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNV-----VRVFMIEPKE 411 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 412 IVDPLTPDASESVNN 426 >gi|46447109|ref|YP_008474.1| putative component D of type II secretion pathway [Candidatus Protochlamydia amoebophila UWE25] gi|46400750|emb|CAF24199.1| putative component D of type II secretion pathway [Candidatus Protochlamydia amoebophila UWE25] Length = 953 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 25/207 (12%) Query: 230 FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + A G+ ++ GG FS G L + A+ T I + P + +A Sbjct: 702 YTAGIIGRHLTHGGLHFSTIGAL--------VKAIHSDTKINIIMNPKIVTEDNNTAEVF 753 Query: 289 SGGQHLYKTVSSSTGATSVTTH-----DYGVVLHFTPTVLSPGRIGLRIQTEVSE----- 338 G YKT S + SV T+ D G L TP + + G I L I EV+ Sbjct: 754 VGSTDRYKTQSIANDIGSVITNNFQFIDVGTTLRVTPLIGNNGIITLDIIQEVTNDGGNA 813 Query: 339 -PVIG-----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 P +G V+ +P + T V +P G ++L+G+++ + IP L +P Sbjct: 814 NPNVGNNPSVVDVNLVPVLSKSRTVTKVHVPDGFFVILSGMIQSTESRSVNRIPCLGGLP 873 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 ++G + + + + I P +V Sbjct: 874 LIGGISKQKSNRDSKRNLMIFIRPLIV 900 >gi|299140102|ref|ZP_07033271.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] gi|298597948|gb|EFI54117.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] Length = 654 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 22/180 (12%) Query: 276 TLTAISGQSASFTS-------GGQHLYKTVSSSTGATSVTT-----HDYGVVLHFTPTVL 323 T T SG S S S GG +L + G ++VT D G+ + TP +L Sbjct: 480 TSTYSSGGSNSLPSSLAGVNVGGTNLNTLLQQYLGTSTVTIPQIQYEDLGITVKTTPRIL 539 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G + L ++ ++ G N G +P R +T+ +P+G +LA + D + Sbjct: 540 RSGDVRLTLELKIEALGTGSNDG-IPILTNRSLTSTITVPAGKEALLASEISRDESRSMS 598 Query: 384 GIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 GIP L++IP F+ + ++E E+ I TP +V+ MR S+ +VE AK Sbjct: 599 GIPGLNEIPG----FQGTNEDKEVDTDELLITITPHIVRAGDMRIASK---RLAVEHTAK 651 >gi|313497412|gb|ADR58778.1| General secretion pathway protein D [Pseudomonas putida BIRD-1] Length = 584 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%) Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ F +G T +++ ++ + GV L P + + L I EVS Sbjct: 402 GQEVPFVTGS----VTQNNANPYQTIERKEVGVKLRIKPQINVDNSVRLDIVQEVSSIAD 457 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN- 400 +A D+ + + R+ T V + G ++L GL+ D++ + +PLL IP LG LFR+ Sbjct: 458 TSSASDVITNK-REIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYLGRLFRSD 516 Query: 401 -SRFNREETEIFIAATPFLVKPVAMRD 426 +R ++ +FI +P +RD Sbjct: 517 ATRNTKQNLMVFI-------RPRILRD 536 >gi|289804655|ref|ZP_06535284.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 465 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 250 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 308 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 309 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 365 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP+L K+P++G+LFR S N+ F+++P Sbjct: 366 HGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN-----VVRVFMIEPKE 420 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 421 IVDPLTPDASESVNN 435 >gi|116053188|ref|YP_793509.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa UCBPP-PA14] gi|115588409|gb|ABJ14424.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa UCBPP-PA14] Length = 710 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 3/210 (1%) Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 FQ T + S + D G K S G + + D + L A+E+ +++ Sbjct: 500 FQGQCTFPTRDNSPTPFVDMGAKDASSG--IGIGFITDNIILDLQLSAMEKTGNGEVVSQ 557 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + ++A G + Y+ SSS ATS + + + L TP + RI + ++ Sbjct: 558 PKVVTSDKETAKILKGSEIPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKV 616 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 P +P + + + + G TIV+ G+ + + + +P L +P L Sbjct: 617 TKDAPDFQNALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQTKAVDKVPFLGDLPYL 676 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424 G LFR + + E+ + TP ++ A+ Sbjct: 677 GRLFRRDTVSDTKNELLVFLTPRIMNNQAI 706 >gi|167574392|ref|ZP_02367266.1| type III secretion system EscC protein [Burkholderia oklahomensis C6786] Length = 487 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 21/232 (9%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + V I ++ + L +G S + G S SF + GG+ + G FS + + S Sbjct: 264 VEISVAIIDINAEDLGALGVDWSASARIGGGSVSF--NSGGQ--PDAGSFSTV-IANTGS 318 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYG 313 F L AL++ + R L+ P++ + A Y VS+ A S++T G Sbjct: 319 FMVQLSALQQNSKARILSRPSIVTLDNMQAVLDRN-ITFYTKVSAERVAKLESIST---G 374 Query: 314 VVLHFTPTVL-SPGR----IGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 +L TP ++ GR + L +Q + P+ +P + T L G Sbjct: 375 SLLRVTPRIIGDAGRQEVMLTLVVQDGRQTSPL--SQQEPLPQTLSSEIATHSLLKEGEA 432 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET-EIF-IAATPF 417 ++L G ++D++ + + IPLL IP LG LF+ +R ++ T +F I A P+ Sbjct: 433 LLLGGFVQDELSEGERKIPLLGDIPFLGRLFKTTRQSQRHTVRLFLIKADPW 484 >gi|121999148|ref|YP_001003935.1| general secretion pathway protein D [Halorhodospira halophila SL1] gi|121590553|gb|ABM63133.1| general secretion pathway protein D [Halorhodospira halophila SL1] Length = 670 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 119/304 (39%), Gaps = 38/304 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V+N L++ QV ++ IAEV + +++G Q G +F A GG + Sbjct: 340 RGVVNRLDVR-RAQVLVEAIIAEVSAERSQELGIQWGALGDQGVGLVNFDAAGGGSVTNI 398 Query: 242 G----------GDFSV-----KGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSA 285 G G+ S+ G R +L AL + L+ P++ + + A Sbjct: 399 GRAAAGGTDALGNLSLGSGLTAGAATRGGELGVLLRALSSESDSNILSTPSVMTMDNEEA 458 Query: 286 SFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 G Q++ G T S+ D GV L P + + L I+ EVS+ Sbjct: 459 EIVVG-QNVPFVTGREVGDTRDFQSIQREDVGVQLRIRPQINEGDSLKLDIEKEVSDVQE 517 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 A D+ + +R T+ + G +VL GL+ + + + +P L IP LG LFR Sbjct: 518 RGEAEDIVTS-MRSITTSAMVDDGEIMVLGGLMDEQAESQTDRVPGLGSIPGLGWLFRYE 576 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 ++ + + P +++ DDA+ + N I + AS Sbjct: 577 SSAAQKQNLMVFLRPRIIEN---------------RDDARELTSPKYNLIRNRQLASRAR 621 Query: 462 GQNY 465 G + Sbjct: 622 GMRF 625 >gi|50122032|ref|YP_051199.1| general secretion pathway protein D [Pectobacterium atrosepticum SCRI1043] gi|49612558|emb|CAG76008.1| general secretion pathway protein D [Pectobacterium atrosepticum SCRI1043] Length = 650 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 34/193 (17%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ ++ AL + LA P++ + A+F T+ G ++++TV Sbjct: 412 NWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERK 471 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKA 356 T G+ L P + + L I+ EVS N G ++ R Sbjct: 472 T---------VGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLG--ATFNTRTV 520 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + V + SG T+V+ GLL + +P L IPILG LFR++ ++ + + Sbjct: 521 NNAVLVSSGETVVVGGLLDKSTNESASKVPFLGDIPILGHLFRSNSQETKKRNLML---- 576 Query: 417 FLVKPVAMRDLSR 429 ++P +RD S+ Sbjct: 577 -FIRPSIIRDRSQ 588 >gi|220915838|ref|YP_002491142.1| general secretion pathway protein D [Anaeromyxobacter dehalogenans 2CP-1] gi|219953692|gb|ACL64076.1| general secretion pathway protein D [Anaeromyxobacter dehalogenans 2CP-1] Length = 902 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/242 (23%), Positives = 95/242 (39%), Gaps = 42/242 (17%) Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 Q G +S+ SS+ F + G +E D + S ++ AL+ + + Sbjct: 532 QTGRVNSLDMSSAIALGGFLTGYTGPISAELKDLGFGNIP---SLGLLIQALQSNSDVNV 588 Query: 272 LAEPTLTAIS--------GQSASFTSG-------------GQHLYKTVSSSTGA------ 304 L+ P L A GQ+ F SG G TV S+ G Sbjct: 589 LSTPHLLATDNEESEITVGQNVPFQSGYAPSGLSNLLSGSGTGASSTVGSALGTQGLGSL 648 Query: 305 -TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYRVRKADT 358 + + + L P + G I L I+ + E P +G P+ R T Sbjct: 649 YAPIQRQNVELKLKIKPQINEGGNIRLTIEEQTEEIAEKDPQLG------PTTAKRSVKT 702 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + TIV+ GL++D + IP L +PILG LFR++ +++ + + TP++ Sbjct: 703 QIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFRDTTTTKQKVNLLLFLTPYI 762 Query: 419 VK 420 ++ Sbjct: 763 IR 764 >gi|167567127|ref|ZP_02360043.1| type III secretion system EscC protein [Burkholderia oklahomensis EO147] Length = 482 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 21/232 (9%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + V I ++ + L +G S + G S SF + GG+ + G FS + + S Sbjct: 259 VEISVAIIDINAEDLGALGVDWSASARIGGGSVSF--NSGGQ--PDAGSFSTV-IANTGS 313 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYG 313 F L AL++ + R L+ P++ + A Y VS+ A S++T G Sbjct: 314 FMVQLSALQQNSKARILSRPSIVTLDNMQAVLDRN-ITFYTKVSAERVAKLESIST---G 369 Query: 314 VVLHFTPTVL-SPGR----IGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 +L TP ++ GR + L +Q + P+ +P + T L G Sbjct: 370 SLLRVTPRIIGDAGRQEVMLTLVVQDGRQTSPL--SQQEPLPQTLSSEIATHSLLKEGEA 427 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET-EIF-IAATPF 417 ++L G ++D++ + + IPLL IP LG LF+ +R ++ T +F I A P+ Sbjct: 428 LLLGGFVQDELSEGERKIPLLGDIPFLGRLFKTTRQSQRHTVRLFLIKADPW 479 >gi|308125791|ref|ZP_05777362.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus K5030] gi|308114494|gb|EFO52034.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus K5030] Length = 559 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GATSVT + L T Sbjct: 397 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVT 455 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 456 PQITPDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHS 515 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 516 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 557 >gi|33864362|ref|NP_895922.1| general (type II) secretion pathway protein D precursor [Prochlorococcus marinus str. MIT 9313] gi|33641142|emb|CAE22272.1| possible general (type II) secretion pathway protein D precursor [Prochlorococcus marinus str. MIT 9313] Length = 774 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 2/87 (2%) Query: 336 VSEPV-IGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 V +P+ G GD+ + R+ +T V + G T++L G++ D ++ P+L IP+ Sbjct: 663 VGQPISTGGKCGDVRTVNSRRLETGAVRVRDGQTLILTGVISDSDTEVVTKWPILGDIPL 722 Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420 +G FR+S +R++ E+ I TP ++ Sbjct: 723 IGQFFRSSSGSRKKNELVIMVTPRIIN 749 >gi|156972409|ref|YP_001443316.1| type IV pilus secretin PilQ [Vibrio harveyi ATCC BAA-1116] gi|156524003|gb|ABU69089.1| hypothetical protein VIBHAR_00029 [Vibrio harveyi ATCC BAA-1116] Length = 583 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GATSVT + L T Sbjct: 421 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVT 479 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 480 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 539 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 540 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 581 >gi|331006529|ref|ZP_08329826.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC1989] gi|330419665|gb|EGG94034.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC1989] Length = 678 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 13/229 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGF--QHSITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVL 251 QV ++ I +++ GF S T +++ P+ + +A F G V V Sbjct: 446 QVMIEARIVSATDTFMEEFGFFVGASDTSTANNPNLTTSALSDATVFNPVGSVLDVSYVS 505 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-H 310 + S + ALE + +++P + Q+A +SG Q + +SS G T T Sbjct: 506 NGVSLALEIQALEDSGYGEVVSQPRVLTGDKQTAKISSGQQIPF---TSSDGDTVTTIFQ 562 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D + L TP + RI + ++ + + V+ + V + TT + G T Sbjct: 563 DAVLSLEVTPQITPDNRIIMELKVNRDSLDTSTVTVSGSPI---NVTELTTTALVGDGDT 619 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 IVL G+ + +P+L IP+LG LF ++ + TE+ I TP Sbjct: 620 IVLGGIYEQTKTSSVSKVPVLGDIPVLGRLFTSNTDQDDRTELLIFITP 668 >gi|146280952|ref|YP_001171105.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri A1501] gi|145569157|gb|ABP78263.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri A1501] Length = 712 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 7/185 (3%) Query: 238 FVSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 FV G S G V D + L A+E+ +++P + ++A G + Sbjct: 515 FVDMGAVGSTSGIGLGFVTDNAILDLQLSAMEKTGNGEVVSQPKVVTADKETAKILKGSE 574 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSY 351 Y+ SSS ATS + + + L TP + RI + ++ EP A +P+ Sbjct: 575 VPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDEPDFSQAATTGVPAI 633 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R + + V + G TIV+ G+ + + + +P L +P LG LFR ++E+ Sbjct: 634 RKNEVNAKVLVTDGETIVIGGVFSNTQSKSVDKVPFLGDLPYLGRLFRRDLVQDRKSELL 693 Query: 412 IAATP 416 + TP Sbjct: 694 VFITP 698 >gi|269961466|ref|ZP_06175830.1| Fimbrial assembly protein PilQ [Vibrio harveyi 1DA3] gi|269833843|gb|EEZ87938.1| Fimbrial assembly protein PilQ [Vibrio harveyi 1DA3] Length = 563 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GATSVT + L T Sbjct: 401 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVT 459 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 460 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 519 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 520 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 561 >gi|260718933|ref|YP_003225074.1| type II secretion protein EtpD [Escherichia coli O103:H2 str. 12009] gi|257762444|dbj|BAI33940.1| type II secretion protein EtpD [Escherichia coli O103:H2 str. 12009] Length = 656 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 34/209 (16%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ +L AL ++ LA P++ + A+F T+ G +++ TV Sbjct: 419 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 478 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358 T G+ L P + + L I+ EVS + + ++ R Sbjct: 479 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 529 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + + +G T+V+ GLL I+ + +PLL IP+LG LF + + + + + P + Sbjct: 530 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFSSKSEHAAKRNLMLFIRPTI 589 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 ++ RD R H S E K FN+ Sbjct: 590 IRE---RDGFR---HASAE---KYLSFNQ 609 >gi|281358092|ref|ZP_06244576.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281315465|gb|EFA99494.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 545 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 26/210 (12%) Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 IG + G SS P+ GG + G K LD +F+ +L A + + L Sbjct: 193 IGATTEVPGQSSQPTTGM----GGNWKPIAG----KDTLD-IAFQWLLTAQD----AKVL 239 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIG 329 + P + IS S G+ + ++STG T S GV L P++++ + Sbjct: 240 SSPNIL-ISRNEVSRIVTGEEIPIQEANSTGNTLSLSTKFKSVGVTLEVEPSMINRDNVT 298 Query: 330 LRIQTEVSEPVI---GVNAGDMPSYRV-----RKADTTVELPSGGTIVLAGLLKDDIQQL 381 LR+ +VS VI V+AG SY V R +T + + +++ GL + Sbjct: 299 LRVYPKVSN-VIRYENVSAGGDTSYPVPVISARSVETYLRMQDKQVVMMGGLYSRNDSLS 357 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ +P+LS +P++G LF +E T++ Sbjct: 358 QQRVPILSDLPLIGELFTGKNLTKEVTQLI 387 >gi|291285874|ref|YP_003502691.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615] gi|290765747|gb|ADD59707.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615] Length = 656 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 34/209 (16%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ +L AL ++ LA P++ + A+F T+ G +++ TV Sbjct: 419 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 478 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358 T G+ L P + + L I+ EVS + + ++ R Sbjct: 479 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 529 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + + +G T+V+ GLL I+ + +PLL IP+LG LF + + + + + P + Sbjct: 530 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFSSKSEHAAKRNLMLFIRPTI 589 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 ++ RD R H S E K FN+ Sbjct: 590 IRE---RDGFR---HASAE---KYLSFNQ 609 >gi|167820388|ref|ZP_02452068.1| Type III secretion system protein [Burkholderia pseudomallei 91] Length = 324 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 67 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 115 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 116 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 173 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 174 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 233 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 234 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 287 >gi|226953742|ref|ZP_03824206.1| fimbrial assembly protein PilQ [Acinetobacter sp. ATCC 27244] gi|226835474|gb|EEH67857.1| fimbrial assembly protein PilQ [Acinetobacter sp. ATCC 27244] Length = 590 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 5/179 (2%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L F + L A++ ++ P + Q A SG + Y + S+ GA +V Sbjct: 413 LSDFMLDLELSAVQADGFGEVISTPKVMTADKQPAKIESGTKIPYAS-STGGGANAVPKT 471 Query: 311 ---DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D + L TP++ G++ +++ P G + + DT V + +G T Sbjct: 472 EFIDATLSLDVTPSITPDGKVMMKLNIAKDAPGAPTPTGQL-TISKNSIDTNVLVDNGET 530 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +VL G+ + + + +P L +P +G LFR + E+ I TP +V R+ Sbjct: 531 VVLGGIFEQENLSSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTRN 589 >gi|328472347|gb|EGF43217.1| fimbrial assembly protein [Vibrio parahaemolyticus 10329] Length = 570 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GATSVT + L T Sbjct: 408 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVT 466 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 467 PQITPDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHS 526 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 527 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 568 >gi|289662170|ref|ZP_06483751.1| fimbrial assembly protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 652 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 8/175 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----GATSVT 308 F+ + L A++ ++ P + + + G + Y T+S + +V Sbjct: 472 FNLDIELSAMQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGAGAAGGGSQANVQ 531 Query: 309 THDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 + + L TPT+ + R+ L + + EV+ + G +P R+ +T V + G Sbjct: 532 FKEVLLELKVTPTITNDNRVFLNMNVKKDEVARFITLPQYGTVPEINRREVNTAVLVADG 591 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ G+ + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 592 ETVVIGGVYEFTDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 646 >gi|308126655|ref|ZP_05911606.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AQ4037] gi|308108444|gb|EFO45984.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AQ4037] Length = 582 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GATSVT + L T Sbjct: 420 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVT 478 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 479 PQITPDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHS 538 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 539 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 580 >gi|213024547|ref|ZP_03338994.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 284 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 69 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 127 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 128 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVP 184 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP+L K+P++G+LFR S N+ F+++P Sbjct: 185 HGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN-----VVRVFMIEPKE 239 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 240 IVDPLTPDASESVNN 254 >gi|282892150|ref|ZP_06300624.1| hypothetical protein pah_c209o019 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497951|gb|EFB40296.1| hypothetical protein pah_c209o019 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 852 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 26/181 (14%) Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------------DYGVVL 316 I+ A P++ AI+ A+ + + +S STG + T YG+ + Sbjct: 618 IQINASPSVVAINQTPATI-----EIAEEISVSTGIFEIPTEGNVTLKDSFARARYGIKI 672 Query: 317 HFTPTVLSPGRIG--------LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 PT+ + + ++T++ I + P R V +P T+ Sbjct: 673 EIIPTIHVREDMNDPEDPVDYVTLETDILFETINPSVDSRPDVTRRHITNQVRIPDQQTV 732 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 ++ GL + ++ KE IP L +IP +G LF ++ TE+FI TP ++ A D Sbjct: 733 IIGGLRRKNLSDSKESIPYLGEIPGIGKLFSITQLTDSATEMFIFITPKIITEAA-EDFD 791 Query: 429 R 429 R Sbjct: 792 R 792 >gi|319786312|ref|YP_004145787.1| type IV pilus secretin PilQ [Pseudoxanthomonas suwonensis 11-1] gi|317464824|gb|ADV26556.1| type IV pilus secretin PilQ [Pseudoxanthomonas suwonensis 11-1] Length = 619 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 6/173 (3%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--- 310 F+ + L AL++ L+ P + + + A G + Y T++ T + Sbjct: 442 FALDLELSALQQEGRGEVLSNPRVVTSNQREAVIRQGREVGYVTLTGGGNQAFATPNVQF 501 Query: 311 -DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGT 367 + + L TPT+ S R+ + + E + I + G +P R+ +T V + G T Sbjct: 502 KEVVLELKVTPTITSDDRVFMAVNVLKDEVLQYIDTSIGQVPEIATREINTAVLVDDGQT 561 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +V+ G+ + +P L +P LG LF+ +E+ E+ I TP +++ Sbjct: 562 VVIGGVYEFTDSNSVSKVPFLGDVPFLGNLFKKKSRLKEKAELLIFLTPKVMR 614 >gi|254455430|ref|ZP_05068859.1| type II Secretion PilQ [Candidatus Pelagibacter sp. HTCC7211] gi|207082432|gb|EDZ59858.1| type II Secretion PilQ [Candidatus Pelagibacter sp. HTCC7211] Length = 516 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 113/258 (43%), Gaps = 34/258 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ------------HSITGSSSGPS--- 227 KV+N ++I E QV ++ + + + KQ+G + I GS+S Sbjct: 261 KVLNEIDIKTE-QVLIEAFVVKATSEFEKQLGTRLGGYYKRNDEQIGGIVGSTSSAGTLD 319 Query: 228 ------KSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLT 278 A D F + G + G+L + + + ALE+ + T++ P + Sbjct: 320 DTSAALAQVAKDQITNFAATGATSGI-GILKKTGSAVLKAEITALEKMGMVETISNPKVF 378 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 I+ Q AS T G + Y+T S T +TS + + L TP+++ G + L IQ + Sbjct: 379 TINNQPASVTQGKEIPYETTSEGTTSTSF--KEAALKLQVTPSIIGDGNVLLDIQVNNDD 436 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-LLSKIPILGAL 397 + D P + T + + G +V+ G+ ++I + KE +P L +P++G L Sbjct: 437 ---ADTSQDEPPITKMEIITKLLVADGDIVVIGGIKSNNISKAKEQVPGGLGNVPVIGNL 493 Query: 398 --FRNSRFNREETEIFIA 413 ++ EE IFIA Sbjct: 494 LKYKKKEDKLEELLIFIA 511 >gi|148546330|ref|YP_001266432.1| general secretion pathway protein D [Pseudomonas putida F1] gi|148510388|gb|ABQ77248.1| general secretion pathway protein D [Pseudomonas putida F1] Length = 584 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%) Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ F +G T +++ ++ + GV L P + + L I EVS Sbjct: 402 GQEVPFVTGS----VTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIAD 457 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN- 400 +A D+ + + R+ T V + G ++L GL+ D++ + +PLL IP LG LFR+ Sbjct: 458 TSSASDVITNK-REIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYLGRLFRSD 516 Query: 401 -SRFNREETEIFIAATPFLVKPVAMRD 426 +R ++ +FI +P +RD Sbjct: 517 ATRNTKQNLMVFI-------RPRILRD 536 >gi|167898820|ref|ZP_02486221.1| Type III secretion system protein [Burkholderia pseudomallei 7894] Length = 325 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 68 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 116 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 117 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 174 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 175 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 234 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 235 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 288 >gi|26987782|ref|NP_743207.1| general secretion pathway protein D [Pseudomonas putida KT2440] gi|24982477|gb|AAN66671.1|AE016295_4 type II secretion pathway protein XcpQ [Pseudomonas putida KT2440] Length = 584 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%) Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ F +G T +++ ++ + GV L P + + L I EVS Sbjct: 402 GQEVPFVTGS----VTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIAD 457 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN- 400 +A D+ + + R+ T V + G ++L GL+ D++ + +PLL IP LG LFR+ Sbjct: 458 TSSASDVITNK-REIKTKVMVEDNGLVILGGLISDELSTSDQRVPLLGDIPYLGRLFRSD 516 Query: 401 -SRFNREETEIFIAATPFLVKPVAMRD 426 +R ++ +FI +P +RD Sbjct: 517 ATRNTKQNLMVFI-------RPRILRD 536 >gi|261856527|ref|YP_003263810.1| type IV pilus secretin PilQ [Halothiobacillus neapolitanus c2] gi|261836996|gb|ACX96763.1| type IV pilus secretin PilQ [Halothiobacillus neapolitanus c2] Length = 729 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 4/164 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL--H 317 L AL+ ++ P + +G +A + G + Y ++ G S T VL Sbjct: 556 LSALQSEGTGEIVSSPKVITTNGHTALISQGTEIPYIATQTAGGVASNTVSFKKAVLSTE 615 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 TP + I + I + EP + P R+ T VE+ +G T+VL G+ + Sbjct: 616 VTPQITPNNNIIMDIDVKKDEPDYTNLLPGTTNPPINTREVKTKVEVKNGETVVLGGIYQ 675 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P +P +G LF+N + E+ I TP ++ Sbjct: 676 FENNNSINKVPFFGDLPGIGNLFKNKEVKNQRLELLIFVTPKII 719 >gi|28899520|ref|NP_799125.1| fimbrial assembly protein [Vibrio parahaemolyticus RIMD 2210633] gi|28807756|dbj|BAC61009.1| fimbrial assembly protein [Vibrio parahaemolyticus RIMD 2210633] Length = 578 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GATSVT + L T Sbjct: 416 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVT 474 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 475 PQITPDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHS 534 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 535 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 576 >gi|291569731|dbj|BAI92003.1| bifunctional pilus assembly protein PilQ/type II secretion pathway protein D [Arthrospira platensis NIES-39] Length = 785 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 24/182 (13%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + L A + + L +PTL G++AS Q + + + S T T+ T G Sbjct: 585 FLSTLQAQIVSGRAKILTDPTLVVQEGETASV----QLVQEVLQSRT--TTFTDTPSGTR 638 Query: 316 LHFTPTVLSPG-RIGLRIQ-------------TEVSEP--VIGVNAGD--MPSYRVRKAD 357 P ++ G +G+ +Q EVS P +G D + +R Sbjct: 639 ETIQPQLVPVGLTLGVNVQRIDDNGFVTMTINPEVSSPGSQVGTGGDDFVLQIFRRNLQS 698 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + L G T++++G+++D + IPLL +PILG+LFR S + E E+ + TP Sbjct: 699 GRIRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPILGSLFRRSSTSSERAEVIVLVTPS 758 Query: 418 LV 419 ++ Sbjct: 759 IL 760 >gi|284052867|ref|ZP_06383077.1| type II and III secretion system protein [Arthrospira platensis str. Paraca] Length = 785 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 24/179 (13%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + L A + + L +PTL G++AS Q + + + S T T+ T G Sbjct: 585 FLSTLQAQIVSGRAKILTDPTLVVQEGETASV----QLVQEVLQSRT--TTFTDTPSGTR 638 Query: 316 LHFTPTVLSPG-RIGLRIQ-------------TEVSEPVIGVNAGD----MPSYRVRKAD 357 P ++ G +G+ +Q EVS P V G + +R Sbjct: 639 ETIQPQLVPVGLTLGVNVQRIDDNGFVTMTINPEVSSPGSQVGTGGDDFVLQIFRRNLQS 698 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + L G T++++G+++D + IPLL +PILG+LFR S + E E+ + TP Sbjct: 699 GRIRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPILGSLFRRSSTSSERAEVIVLVTP 757 >gi|225166011|ref|ZP_03727761.1| Type II secretory pathway component PulD-like protein [Opitutaceae bacterium TAV2] gi|224799746|gb|EEG18225.1| Type II secretory pathway component PulD-like protein [Opitutaceae bacterium TAV2] Length = 693 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 31/176 (17%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-------------KTVSSS 301 S L A+E++ +TL+ P LT I+ + A+ G Y ++ SS Sbjct: 444 SLTATLTAIEQSGESQTLSAPRLTVINNRPATIRDGKTQYYYEEYQVSQTILENRSTSSL 503 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAG-------------- 346 + T GV L ++ GR I L ++ VS+ V V Sbjct: 504 VPSGKPTKLSAGVSLDVLASIGGDGRSIMLALKPSVSQDVELVTFATVSDLDSSGRVVST 563 Query: 347 ---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +P R ++ T V + SG T+V+ G++++ E +P+L IP LGALFR Sbjct: 564 FDIKLPQSRDQEISTRVIVQSGETVVMGGVIENVQSTFTESVPVLGAIPYLGALFR 619 >gi|222100907|ref|YP_002535475.1| Secretin/TonB, short N-terminal domain precursor [Thermotoga neapolitana DSM 4359] gi|221573297|gb|ACM24109.1| Secretin/TonB, short N-terminal domain precursor [Thermotoga neapolitana DSM 4359] Length = 380 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 17/184 (9%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERAT-----------AIRTLAEPTLTAISGQSASFT 288 SEG +F++ +L++ + + V + L+ + + + LA P L SG S F+ Sbjct: 192 SEGENFTI-NLLEK-ALDIVFNTLDYSVLSHIELSIGDGSAKLLANPRLRLQSGSSGKFS 249 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 + Q Y +++ V + + G + P +L + L ++ S + N G + Sbjct: 250 AKTQRNY--ITTENDKKVVKSVELGTEVEIKPFLLRDNTVSLTVKI-TSSNALDKNEG-L 305 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + TV L G T+ + G+ D + + +PLL IP+ G LF+ + Sbjct: 306 PDTTSQSIEGTVRLKLGETVAIGGIGFDTYTTVTDKVPLLGDIPVFGYLFKKETERKIHK 365 Query: 409 EIFI 412 EI I Sbjct: 366 EILI 369 >gi|167828759|ref|ZP_02460230.1| Type III secretion system protein [Burkholderia pseudomallei 9] Length = 326 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 69 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 117 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 118 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 175 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 176 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 235 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 236 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 289 >gi|307823412|ref|ZP_07653641.1| type II and III secretion system protein [Methylobacter tundripaludum SV96] gi|307735397|gb|EFO06245.1| type II and III secretion system protein [Methylobacter tundripaludum SV96] Length = 554 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 21/176 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTHD-- 311 F + +E L+ P ++ ++ QSA G + T + GAT V Sbjct: 347 FRAFVELMETQGKTNVLSSPRISTLNNQSAIIKVGQDEYFATGFNGGTPGATGVAPTAPT 406 Query: 312 -------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKA 356 G+ L TP + I L I +S+ + + D + VR++ Sbjct: 407 VLIDVFFSGISLDVTPQIDDNEDITLHIHPSISQ--VKKDTKDFGLDITLPLALTTVRES 464 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 D+ V+ +G IVL GL++++ + K+G+ L+ IP +G LFR + +++E+ I Sbjct: 465 DSIVKAKNGQIIVLGGLMQENDNEKKQGVTGLAAIPYIGNLFRVNTGTTQKSELII 520 >gi|254445969|ref|ZP_05059445.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] gi|198260277|gb|EDY84585.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] Length = 736 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 15/183 (8%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTG 303 GV+ + +L+ + ++ L+ PTL + A+ T S S T Sbjct: 503 GVISGLTLNGILNTARSNSNVQLLSVPTLVTTHNKEATIVVAEARPIVTSSQTSSISDTF 562 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKAD 357 +V D G+ L TP ++ P + IQ E+ + + + ++ D P R+A Sbjct: 563 RQNVQYEDIGIELTVTP-LIGPNDV---IQLEIDQKIDDISGKVTIDGNDQPIIGRRQAT 618 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + V + + +VL GL ++ + + + + L +IP+LG LF +TE+ + P Sbjct: 619 SYVSVANHELVVLGGLQRNRVTKGRSKMSFLGEIPLLGGLFNRRSDESVKTELLVFIRPE 678 Query: 418 LVK 420 +++ Sbjct: 679 VIR 681 >gi|257092259|ref|YP_003165900.1| type II and III secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044783|gb|ACV33971.1| type II and III secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 624 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P R R+ ++ + + SG VL GL++D I +P L IP +G +F N + + Sbjct: 511 VPQIRTREIESMLRVESGDIAVLGGLMEDRIGNTVGRLPGLGDIPFVGEVFNNRGNSSSK 570 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 +E+ + L++P +RD S D S + F R +++Y P Sbjct: 571 SELVV-----LLRPTVIRDASIDGDFSSFREFLPKKDFFRTDQVYRP 612 >gi|167850214|ref|ZP_02475722.1| Type III secretion system protein [Burkholderia pseudomallei B7210] Length = 333 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 76 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 124 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 125 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 182 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 183 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 242 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 243 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 296 >gi|153868094|ref|ZP_01998196.1| Bacterial type II and III secretion system protein [Beggiatoa sp. SS] gi|152144586|gb|EDN71804.1| Bacterial type II and III secretion system protein [Beggiatoa sp. SS] Length = 219 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 4/173 (2%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G + + + L A++ + ++ P + + Q A T G + Y S+ GA + Sbjct: 48 GKIGSYLLQLELSAMQSEGSGEIISSPRIITGNQQEAIITQGSEIPY-VESAGVGAVAQV 106 Query: 309 THDYGVV-LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 V+ L TP + RI + + + + +G S R+ T V + +G T Sbjct: 107 QFKQAVLELKVTPQITPDDRINMELS--IKKDSVGARINGNISIDKREVKTNVLVDNGDT 164 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +VL G+ + +P LS +P++G LF+ +++E+ I TP ++K Sbjct: 165 VVLGGVYERSSSNNITRVPFLSDLPLIGNLFKRRSSQDDKSELLIFVTPRIIK 217 >gi|76817430|ref|YP_335745.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1710b] gi|76581903|gb|ABA51377.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710b] Length = 339 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 82 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 130 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 131 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 188 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 189 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 248 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 249 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 302 >gi|269214941|ref|ZP_06158925.1| type IV pilus secretin PilQ [Neisseria lactamica ATCC 23970] gi|269208722|gb|EEZ75177.1| type IV pilus secretin PilQ [Neisseria lactamica ATCC 23970] Length = 254 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 5/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + Y+ SSS ++S TT VL T Sbjct: 83 LSASESLSKTKTLANPRVLTQNRKEAKIESGTEIPYQDTSSSGSSSSTTTTFKKAVLGLT 142 Query: 320 --PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ PV V + + +T + +GGT+++ G+ ++ Sbjct: 143 VTPNITPDGQIIMTVKINKDTPVDCTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEE 202 Query: 377 DIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFI 412 + +PLL IP++G LF R NR E IFI Sbjct: 203 ENGNTLTKVPLLGDIPVIGNLFKTRGKSTNRRELLIFI 240 >gi|300693821|ref|YP_003749794.1| type III secretion protein [Ralstonia solanacearum PSI07] gi|299075858|emb|CBJ35167.1| Type III secretion protein [Ralstonia solanacearum PSI07] Length = 590 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + AL++ R A P + + A + Q+ Y V+ A + GV L Sbjct: 429 ISALQQTNQARITANPKVATLDNTEAVMDNR-QNFYVPVAGYQSA-DLYAISAGVSLRVL 486 Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ G RI + + E + + G++P + DT + G ++++AG D Sbjct: 487 PMVVMDGGTVRIRMNVHIEDGQ-ITSQQVGNLPVTSQSEIDTQALINEGESLLIAGYSVD 545 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +P LSKIP++GALFR + + + TP ++ P Sbjct: 546 QQAKTVDAVPGLSKIPLVGALFRTDQTTGQRFQRMFLVTPRVITP 590 >gi|218988958|gb|ACL13621.1| invasion protein InvG [Salmonella enterica subsp. salamae serovar Sofia] Length = 562 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 78/195 (40%), Gaps = 16/195 (8%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 LD F ++ALE ++ P L A F + K + A T Sbjct: 347 LDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT- 405 Query: 311 DYGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 YG ++ P + G+I + + +T ++ V+A +P T +P Sbjct: 406 -YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQTDTTTSVDA--LPEVGRTLISTIARVP 462 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G ++++ G +D + IP L KIP +G+LFR S N+ F+++P Sbjct: 463 HGKSLLVGGYTRDANTDTVQSIPFLGKIPFIGSLFRYSSKNKSNV-----VRVFMIEPKE 517 Query: 424 MRDLSRPDDHYSVED 438 + D PD SV + Sbjct: 518 IVDPLTPDASESVNN 532 >gi|254447525|ref|ZP_05060991.1| type II and III secretion system protein [gamma proteobacterium HTCC5015] gi|198262868|gb|EDY87147.1| type II and III secretion system protein [gamma proteobacterium HTCC5015] Length = 506 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 43/231 (18%) Query: 227 SKSFAADFGGKFVSEGGDFSVKGVL----------------DRFSFETVLHA----LERA 266 S+S+ A + V GG+++++ + ++ S ++V A LE+ Sbjct: 257 SQSYQAGVDWQRVMNGGEWTLQQSMTKPSLAASPMTLLAQHEKQSRDSVTRAAVTLLEQF 316 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDY------GVV 315 + + P + A++ Q + + +Y T+ ++S GAT+ T + G Sbjct: 317 GDVNVHSRPRIVALNNQPSLLKVIDKRVYFTLDVQNTTASGGATTSTVETHINTLPVGFT 376 Query: 316 LHFTPTVLSPG-----RIGL-RIQTEVSEPVIGVNA----GDMPSYRVRKADTTVELPSG 365 + TP V R L RI V +P + A +P VR+ +T + L Sbjct: 377 MSVTPFVTQSDVTLSVRPSLSRITRFVDDPSPALAAEGIVSRVPEVEVREMETLLRLDGE 436 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAA 414 T ++ GL+++ + +P+LS+IP LG LF R R+N+ E I + A Sbjct: 437 QTALIGGLMQERRSEEHYAVPVLSRIPWLGELFKGREERWNKSELVILLRA 487 >gi|319761560|ref|YP_004125497.1| type iv pilus secretin pilq [Alicycliphilus denitrificans BC] gi|330823429|ref|YP_004386732.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans K601] gi|317116121|gb|ADU98609.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans BC] gi|329308801|gb|AEB83216.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans K601] Length = 713 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/201 (23%), Positives = 89/201 (44%), Gaps = 16/201 (7%) Query: 231 AADFGGKFVSEGGDFS-VKGV-----------LDRFSFETVLHALERATAIRTLAEPTLT 278 A + GG FV+ S V GV +RF L A+E + ++ P L Sbjct: 510 AVNVGGNFVNLPASLSNVTGVGSFALSIFNSAANRF-LTLELSAMEADGQGKVVSSPRLI 568 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A G ++ Y +V++ GAT++ + L P + G I L + +V++ Sbjct: 569 TADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVVPQITPEGNIILDL--DVNK 625 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G + + + T V + +GGT+V+ G+ + + + IPLL +P++G LF Sbjct: 626 DSRGESTTQGVAIDTKHIKTQVLVENGGTVVIGGIFELEETNQENKIPLLGDVPVMGNLF 685 Query: 399 RNSRFNREETEIFIAATPFLV 419 ++ + E+ + TP ++ Sbjct: 686 KSRTKESSKREMLVFITPKVI 706 >gi|300697476|ref|YP_003748137.1| type III secretion protein [Ralstonia solanacearum CFBP2957] gi|299074200|emb|CBJ53745.1| Type III secretion protein [Ralstonia solanacearum CFBP2957] Length = 589 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + AL++ R A P + + A + Q+ Y V+ A + GV L Sbjct: 428 ISALQQTNQARITASPKVATLDNTEAVMDNR-QNFYVPVAGYQSA-DLYAISAGVSLRVL 485 Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ G RI + + E + + G++P + DT + G ++++AG D Sbjct: 486 PMVVMDGGTVRIRMNVHIEDGQ-ITSQQVGNLPVTSQSEIDTQALINEGESLLIAGYSVD 544 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +P LSKIP++GALFR + + + TP ++ P Sbjct: 545 QQAKTVDAVPGLSKIPLVGALFRTDQTTGQRFQRMFLVTPRVITP 589 >gi|262195825|ref|YP_003267034.1| general secretion pathway protein D [Haliangium ochraceum DSM 14365] gi|262079172|gb|ACY15141.1| general secretion pathway protein D [Haliangium ochraceum DSM 14365] Length = 842 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 9/175 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGAT---- 305 SF + AL ++ + L+ P + + + A + G Y++ ++ TG + Sbjct: 530 SFGVLFQALATSSNVNVLSSPHIVTTNNEEAEISVGQNIPYQSGLSGLPTAGTGVSFPVQ 589 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 SV D + L TP + + + L I E+S+ AG PS+ R TTV + Sbjct: 590 SVQRQDVALTLKITPHINASDMVTLEIDQEISDIASPDFAGLGPSWSKRTVKTTVVVRDQ 649 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +IV+ GL+ D + + +PLL +P+LG F+ + + +T + I TP+++K Sbjct: 650 QSIVIGGLMSDRMTYNESKVPLLGDLPLLGYFFKFTERQKSKTNLLILLTPYVIK 704 >gi|255619353|ref|XP_002540016.1| General secretion pathway protein D precursor, putative [Ricinus communis] gi|223500090|gb|EEF22367.1| General secretion pathway protein D precursor, putative [Ricinus communis] Length = 304 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 7/157 (4%) Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305 K V + HALE L+ P + + + A+ G T S +TGA+ Sbjct: 147 KQVNGELGLGAIAHALESTGHANILSTPNMITLDNELATIKVGQNIPIITGSFTTGASGA 206 Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 +V D G++L P + G I L I E S V++ VR ++ V Sbjct: 207 SNPFQTVDRKDVGLLLKVRPQISEGGTIKLAIYHENSGIDNSVSSASGIVTTVRAIESNV 266 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 +G +VL GL+ DD + E + L IPILG L Sbjct: 267 LADNGQIVVLGGLISDDESENNEKVRGLGDIPILGNL 303 >gi|21232657|ref|NP_638574.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767269|ref|YP_242031.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. 8004] gi|21114464|gb|AAM42498.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572601|gb|AAY48011.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. 8004] Length = 648 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 3/108 (2%) Query: 316 LHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L TPT+ + R+ L + + EV+ + G +P R+ +T V + G T+V+ G Sbjct: 535 LKVTPTITNDNRVFLNMNVKKDEVARFITLPQYGTVPEINRREVNTAVLVADGETVVIGG 594 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 595 VYEFTDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642 >gi|50086334|ref|YP_047844.1| putative outer membrane protein (ComQ) [Acinetobacter sp. ADP1] gi|12642803|gb|AAK00351.1|AF329876_7 putative outer membrane protein ComQ [Acinetobacter sp. BD413] gi|49532310|emb|CAG70022.1| putative outer membrane protein (ComQ) [Acinetobacter sp. ADP1] Length = 723 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 5/172 (2%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-TVSSSTGATSVTT 309 L F + L AL+ ++ P + + Q A +G + Y+ T +S+ G+T+ T+ Sbjct: 546 LSDFMLDLELSALQADGYGEVISTPKVMSADKQKAKVATGVEVPYQSTTNSAAGSTATTS 605 Query: 310 HDYGVV-LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA-DTTVELPSGGT 367 ++ L TP + G+I + + ++ I A + + + +T V + +G T Sbjct: 606 FKEALLSLEVTPNITPDGKILMEL--NIANDSINSYAQNGEAILNKNTINTNVLVNNGET 663 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +VL G+ + +P L +P +G LF+ + + + E+ I TP +V Sbjct: 664 VVLGGVFEQTTNNAVTKVPFLGDLPYVGRLFKKTAKSEAKNELLIFVTPRIV 715 >gi|167923347|ref|ZP_02510438.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei BCC215] Length = 353 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 96 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 144 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 145 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 202 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 203 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 262 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 263 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 316 >gi|167908440|ref|ZP_02495645.1| Type III secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 360 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 103 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 151 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 152 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 209 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 210 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 269 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 270 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 323 >gi|225874512|ref|YP_002755971.1| type II/III secretion system protein [Acidobacterium capsulatum ATCC 51196] gi|225792554|gb|ACO32644.1| type II/III secretion system protein [Acidobacterium capsulatum ATCC 51196] Length = 786 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 12/144 (8%) Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTH----DYGVVL 316 T + + EP + A GQ A G + T S TGA + V T D GV + Sbjct: 395 TDTQIIQEPRIRASDGQDAQLKIGEKLPVATGSYQTGAATAIVSSLVNTQFQYLDVGVNI 454 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLL 374 PTVLS + ++++ +VS N G D P R AD T+ L +G ++ G+ Sbjct: 455 DVKPTVLSDRDVSMKVKIDVSSTNGTENLGGVDEPIITQRVADETIRLKNGEANLIGGIR 514 Query: 375 KDDIQQLKEGIPLLSKIPILGALF 398 + G P LS++P+L +F Sbjct: 515 QVQTSNSLSGTPGLSELPLLKYIF 538 >gi|253771851|ref|YP_003034682.1| type II and III secretion system protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|242378852|emb|CAQ33644.1| gspD [Escherichia coli BL21(DE3)] gi|253322895|gb|ACT27497.1| type II and III secretion system protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253979310|gb|ACT44980.1| general secretory pathway component, cryptic [Escherichia coli BL21(DE3)] Length = 338 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 9/86 (10%) Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P++ R V + +G T+VL GLL D ++ +PLL IP++G LFR + R + Sbjct: 212 PTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKR 271 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHY 434 + + ++P +RD DD Y Sbjct: 272 NLMV-----FIRPTIIRD----DDVY 288 >gi|257458871|ref|ZP_05623994.1| bacterial type II and III secretion system protein [Campylobacter gracilis RM3268] gi|257443859|gb|EEV18979.1| bacterial type II and III secretion system protein [Campylobacter gracilis RM3268] Length = 389 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 13/213 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 +QV K+TI E + K IG + G + F + +E + K Sbjct: 163 EQVNFKLTILETNTNDYKDIGSHLNSLGDVVTRSDLNYFINLITMPYSAETNVVTTK--- 219 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVT 308 + F VL L++ P L A SG F+S Y T +S+ G + Sbjct: 220 -KRGFYGVLSLLQQNGVTTIKQSPFLVAKSGAEVYFSSVENVPYLTNTSTYTQNGTATQN 278 Query: 309 THDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +++Y G+ + P VL + + V E ++ P ++ + L G Sbjct: 279 SYEYKDVGLKIKIRPVVLQNSNVDFSLDL-VVEDLLDTQNTLTPRTSKKELKSNYSLKRG 337 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 +VL+G+ KD + G+PLL IPIL LF Sbjct: 338 ELLVLSGINKDVAYSKRNGVPLLKDIPILKYLF 370 >gi|32471402|ref|NP_864395.1| protein transporter [Rhodopirellula baltica SH 1] gi|32443243|emb|CAD72074.1| conserved hypothetical protein-putative protein transporter [Rhodopirellula baltica SH 1] Length = 521 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 17/162 (10%) Query: 273 AEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTH------DYGVVLHFTPTVLSP 325 A P + A G+ A+ + + STG SV D G++L TP + Sbjct: 352 ATPHVMAKDGEQANIAINRETFFSVQPPGSTGNNSVFFQQNIQKVDAGIMLDITPHIRG- 410 Query: 326 GRIGLRIQ-TEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 + + I+ EVSE P + +N P R TTV + G TIV+ GL++ + Sbjct: 411 DEVTIDIEKAEVSEDVRNATPALSINQ--YPIINRRSVSTTVSVKDGKTIVIGGLVQRET 468 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP LS++P +G LF+ ++ + E+ I +P +V+ Sbjct: 469 VDRVNRIPGLSRLPGVGYLFQTTQRQTRDAEVVIFISPRIVR 510 >gi|254238253|ref|ZP_04931576.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa C3719] gi|126170184|gb|EAZ55695.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa C3719] Length = 710 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 3/210 (1%) Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 FQ T + S + D G K + G + + D + L A+E+ +++ Sbjct: 500 FQGQCTFPTRDNSPTPFVDMGAKDATSG--IGIGFITDNIILDLQLSAMEKTGNGEVVSQ 557 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + ++A G + Y+ SSS ATS + + + L TP + RI + ++ Sbjct: 558 PKVVTSDKETAKILKGSEIPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKV 616 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 P +P + + + + G TIV+ G+ + + + +P L +P L Sbjct: 617 TKDAPDFQNALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQTKAVDKVPFLGDLPYL 676 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424 G LFR + + E+ + TP ++ A+ Sbjct: 677 GRLFRRDTVSDTKNELLVFLTPRIMNNQAI 706 >gi|94968501|ref|YP_590549.1| type II and III secretion system protein [Candidatus Koribacter versatilis Ellin345] gi|94550551|gb|ABF40475.1| type II and III secretion system protein [Candidatus Koribacter versatilis Ellin345] Length = 808 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 72/167 (43%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + + L A E+ ++ L+ P + + +A G + T+S G +VT D Sbjct: 641 YGLDLYLSAAEQRGLLKILSRPRVVTQNNVTALVRQGFRLPVVTLSQLNGPPTVTYVDAF 700 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L TP + I L + E + P P ++ T V + GGT+ + G+ Sbjct: 701 LRLTVTPQITVENTIFLAVDVENTTPDFTRTVLGNPILLTQQTTTQVLVTDGGTVTIGGV 760 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++ + +P+L IPIL LF + N + E+ TP +V+ Sbjct: 761 VQTQNTLTSQEVPILGDIPILKYLFMHKTTNTQTQELIFFITPKIVQ 807 >gi|37527640|ref|NP_930984.1| Type III secretion component protein SctC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787075|emb|CAE16150.1| Type III secretion component protein SctC [Photorhabdus luminescens subsp. laumondii TTO1] Length = 614 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 10/178 (5%) Query: 243 GDFSVKGVLDRFSFETVLHA---LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G ++ ++DR + +L LE + + ++ PTL A + + K Sbjct: 335 GSAALGSLVDRRGLDYLLAKITLLESKGSAQVISRPTLLTQENTQAVIDNNETYYVKVNG 394 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRK 355 T YG +L P V+ G I L + E + D +P+ Sbjct: 395 ERVAELKSLT--YGTMLRMIPRVIQVGDSSEISLDLHIEDGNQKPNSSGQDGIPTISRTV 452 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN-SRFNREETEIFI 412 DT + G ++++ G+ +D++ Q+ +P L IP LG LFRN S R +FI Sbjct: 453 VDTVARVGHGQSLLIGGIYRDEMSQITRKVPFLGDIPYLGVLFRNTSEQVRRSVRLFI 510 >gi|319786555|ref|YP_004146030.1| general secretion pathway protein D [Pseudoxanthomonas suwonensis 11-1] gi|317465067|gb|ADV26799.1| general secretion pathway protein D [Pseudoxanthomonas suwonensis 11-1] Length = 711 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 8/123 (6%) Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELP 363 ++ D GV L P + S G I L I+ EVS V G + D R+ +T V + Sbjct: 522 TIDRQDVGVRLTVRPQINSGGGITLAIRQEVSS-VSGTVSRSSDELVLNKREIETNVVVD 580 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G I L GLL ++ +PLL IP+LGALFR++ + T + + FL +P Sbjct: 581 DGAMIALGGLLDHTSSDRRDKVPLLGDIPVLGALFRSTSRSSTRTNLMV----FL-RPTV 635 Query: 424 MRD 426 +RD Sbjct: 636 IRD 638 >gi|27550050|gb|AAO18033.1| LscC [Photorhabdus luminescens] Length = 621 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 10/178 (5%) Query: 243 GDFSVKGVLDRFSFETVLHA---LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G ++ ++DR + +L LE + + ++ PTL A + + K Sbjct: 342 GSAALGSLVDRRGLDYLLAKITLLESKGSAQVISRPTLLTQENTQAVIDNNETYYVKVNG 401 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRK 355 T YG +L P V+ G I L + E + D +P+ Sbjct: 402 ERVAELKSLT--YGTMLRMIPRVIQVGDSPEISLDLHIEDGNQKPNSSGRDGIPTISRTV 459 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN-SRFNREETEIFI 412 DT + G ++++ G+ +D++ Q+ +P L IP LG LFRN S R +FI Sbjct: 460 VDTVARVGHGQSLLIGGIYRDEMSQITRKVPFLGDIPYLGVLFRNTSEQVRRSVRLFI 517 >gi|167915501|ref|ZP_02502592.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 112] Length = 348 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 91 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 139 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 140 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 197 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 198 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 257 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 258 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 311 >gi|328951048|ref|YP_004368383.1| type II and III secretion system protein [Marinithermus hydrothermalis DSM 14884] gi|328451372|gb|AEB12273.1| type II and III secretion system protein [Marinithermus hydrothermalis DSM 14884] Length = 523 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 57/241 (23%), Positives = 94/241 (39%), Gaps = 29/241 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV LKV + EV + +G + S G + D G + F L Sbjct: 282 QVQLKVRVQEVDSQVFNNLGLKWD--SLSGGNLIASVLDNGLNLI-----FDATRSLASL 334 Query: 255 SFETVLHALERATAIRTLAEPTLT-------------AISGQSASFTSGGQHLYKTVSSS 301 + L ALE+ R +++ L + A +G + L Sbjct: 335 NIVATLDALEKQNLARRVSDANLIIEDNFGASDEDLRQTGAKGAELKAGAKLLLPI--RI 392 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-EPVIGVNAGDMPSYRVRKADTTV 360 G V D G+ L P + + +I L + T+ +P +G S + + T Sbjct: 393 GGEIEVREFDVGLTLRLRPQITADRQILLEVFTQTGGDP----QSGPEGSILIPQKSTLS 448 Query: 361 EL--PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +L G T+VL GL++ + + + +P L IPILG LFR + +TE+ + T + Sbjct: 449 KLRIKDGQTVVLGGLIERTVNKSENKVPFLGDIPILGMLFRQTSNEVRDTELLVVITANI 508 Query: 419 V 419 V Sbjct: 509 V 509 >gi|91227284|ref|ZP_01261709.1| fimbrial assembly protein [Vibrio alginolyticus 12G01] gi|91188678|gb|EAS74967.1| fimbrial assembly protein [Vibrio alginolyticus 12G01] Length = 560 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GAT+VT + L T Sbjct: 398 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVT 456 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 457 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 516 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 517 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 558 >gi|262394223|ref|YP_003286077.1| putative maturation protein [Vibrio sp. Ex25] gi|262337817|gb|ACY51612.1| putative maturation protein [Vibrio sp. Ex25] Length = 353 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 17/174 (9%) Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 EGGDF+ ++ A+ + + L+ P + + + T G + T S Sbjct: 184 EGGDFN-----------ALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSE 232 Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 T + D GV L P V+ + L+I + A D+ + R Sbjct: 233 VTDGGNRVQQIERKDVGVSLEVVPHVIG-DHVVLQIMQKSDSVTDSSIASDIIT-NTRTL 290 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 T V++ TI L GL+ + + G+P+L +P+LGALFR+ + N + E+ Sbjct: 291 QTVVKVKDRQTISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKEL 344 >gi|313110077|ref|ZP_07795979.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa 39016] gi|310882481|gb|EFQ41075.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa 39016] Length = 714 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 5/205 (2%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 TG+S PS D G K + G + + D + L A+E+ +++P + Sbjct: 511 TGTSKSPSPFV--DIGAKDATSG--IGIGFITDNIILDLQLSAMEKTGNGEIVSQPKVVT 566 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 ++A G + Y+ SSS ATS + + + L TP + RI + ++ P Sbjct: 567 SDKETAKILKGQEVPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAP 625 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +P + + + + G TIV+ G+ + + + +P L +P LG LFR Sbjct: 626 DFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLGDLPYLGRLFR 685 Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424 + + E+ + TP ++ A+ Sbjct: 686 RDTVSDVKNELLVFLTPRIMNNQAI 710 >gi|158334571|ref|YP_001515743.1| secretion system protein [Acaryochloris marina MBIC11017] gi|158304812|gb|ABW26429.1| secretion system protein [Acaryochloris marina MBIC11017] Length = 682 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 19/169 (11%) Query: 270 RTLAEPTLTAISGQSASFT------SGGQHLYKTVSSSTGATSVTT------HDYGVVLH 317 + L PTL G SA +G + S+ GAT+ +T + GV+L+ Sbjct: 490 KILTNPTLLVQEGSSAQVNLTEQVFTGFVQRVSSSGSTAGATTDSTSTEPNIQNAGVILN 549 Query: 318 FT-PTVLSPGRIGLRIQTEVS----EPVIGVNAGDMP-SYRVRKADT-TVELPSGGTIVL 370 + G + L + EVS + +GD + R+ +T V L G TIVL Sbjct: 550 VVVDHIDDNGFVTLNLSPEVSSLSGRTFVDALSGDTAFLLQQRRVETGKVRLRDGQTIVL 609 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+++D + +P+L IP+LG LFR R+ +E+ + TP +V Sbjct: 610 TGIIQDQDRVDVSKVPILGDIPLLGRLFRRENKTRQRSELVVLVTPQIV 658 >gi|206889986|ref|YP_002248061.1| type II protein secretion protein-like protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741924|gb|ACI20981.1| type II protein secretion protein-like protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 538 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 22/186 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT- 308 F +++ AL +RTL+ P ++ ++GQ++ FT G + + +S TG+ +T Sbjct: 351 FSSLIKALGEFGDVRTLSNPRVSIMNGQTSLFTVGRNYSFISKAQSNVTTSGTGSPIITY 410 Query: 309 ---THDY--GVVLHFTPTVLSPGRIGLRIQ------TEVSEPVIGVNAGD----MPSYRV 353 T + G+++ P + G I L I E+ G + + +P + Sbjct: 411 TVETSNLLSGLIIGIVPYIDEKGEISLTITPIVSNLIEMRSATFGSSGAETTIQLPRVDL 470 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+ TTV++ G I++ G++K + + +PLL IP++G LF++ TE+ I Sbjct: 471 RELSTTVKVKDGEIIIIGGMIKKEESFSENKMPLLGDIPVVGELFKSKDKEETNTELVIL 530 Query: 414 ATPFLV 419 P ++ Sbjct: 531 LQPRII 536 >gi|218894139|ref|YP_002443008.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa LESB58] gi|218774367|emb|CAW30184.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa LESB58] Length = 714 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 5/205 (2%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 TG+S PS D G K + G + + D + L A+E+ +++P + Sbjct: 511 TGTSKSPSPFV--DIGAKDATSG--IGIGFITDNIILDLQLSAMEKTGNGEIVSQPKVVT 566 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 ++A G + Y+ SSS ATS + + + L TP + RI + ++ P Sbjct: 567 SDKETAKILKGQEVPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAP 625 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +P + + + + G TIV+ G+ + + + +P L +P LG LFR Sbjct: 626 DFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLGDLPYLGRLFR 685 Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424 + + E+ + TP ++ A+ Sbjct: 686 RDTVSDVKNELLVFLTPRIMNNQAI 710 >gi|167724236|ref|ZP_02407472.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei DM98] Length = 351 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 94 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 142 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 143 RFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 200 Query: 315 VLHFTPTVLSPG-RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + G ++ + + E S+ I ++ MP + +T +P Sbjct: 201 LVNVLPRLTRDGSQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 260 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 261 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 314 >gi|254244078|ref|ZP_04937400.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa 2192] gi|126197456|gb|EAZ61519.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa 2192] Length = 714 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 5/205 (2%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 TG+S PS D G K + G + + D + L A+E+ +++P + Sbjct: 511 TGTSKSPSPFV--DIGAKDATSG--IGIGFITDNIILDLQLSAMEKTGNGEIVSQPKVVT 566 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 ++A G + Y+ SSS ATS + + + L TP + RI + ++ P Sbjct: 567 SDKETAKILKGQEVPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAP 625 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +P + + + + G TIV+ G+ + + + +P L +P LG LFR Sbjct: 626 DFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLGDLPYLGRLFR 685 Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424 + + E+ + TP ++ A+ Sbjct: 686 RDTVSDVKNELLVFLTPRIMNNQAI 710 >gi|32471479|ref|NP_864472.1| general secretion pathway protein D [precursor] [Rhodopirellula baltica SH 1] gi|32443320|emb|CAD72153.1| general secretion pathway protein D [Precursor] [Rhodopirellula baltica SH 1] Length = 1265 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 21/180 (11%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----TVSSSTGATS------VTT 309 L L A ++ L+ P + + + F GQ + + + TG T+ + Sbjct: 873 LRTLRVANRLQILSRPEIMT-ADNTEGFVQVGQSFPRPTELSFTGGTGGTASQPIIGIED 931 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSY----RVRKADTT 359 + G++L TP V + G I + I S+ +IG D+P + +A T Sbjct: 932 EEIGIILRVTPRVGADGMIFMAIDASRSDINNNEGQIIGAFQDDVPIFVPAIDRTQAQAT 991 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G T+V GL++ Q +P LS IP++G F+ + +E+ + TP LV Sbjct: 992 ITAFDGQTVVFGGLIQKVRQNRTRRVPYLSNIPVVGTFFKFDSEIEQRSELLVVMTPILV 1051 >gi|332159936|ref|YP_004296513.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607512|emb|CBY29010.1| secretion system apparatus SsaC [Yersinia enterocolitica subsp. palearctica Y11] gi|325664166|gb|ADZ40810.1| Type III secretion outer membrane pore, YscC/HrcC family [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 493 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 12/212 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ + VTI +V + Q+G S + S G SF + G+ FS + + Sbjct: 267 QIEISVTIIDVDAGDISQLGIDWSASTSIGGAGVSFNS---GEAAPHSDGFSTV-IGNTG 322 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +F L+AL++ + R L+ P++ ++ A K T G Sbjct: 323 NFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKLQGDKVAKLESITS--GS 380 Query: 315 VLHFTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 +L TP ++ + L IQ + + ++ +P + T L G +++ Sbjct: 381 LLRVTPRMIDSDGVKEVLLNLNIQDGQQQAPLS-SSEPLPEIQNSDISTQATLRVGQSLL 439 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 L G ++D + + IPLL IP+LG LFR++ Sbjct: 440 LGGFIQDKQIESQNKIPLLGDIPLLGGLFRST 471 >gi|254229802|ref|ZP_04923209.1| type IV pilus secretin PilQ subfamily [Vibrio sp. Ex25] gi|262393099|ref|YP_003284953.1| type IV pilus biogenesis protein PilQ [Vibrio sp. Ex25] gi|151937701|gb|EDN56552.1| type IV pilus secretin PilQ subfamily [Vibrio sp. Ex25] gi|262336693|gb|ACY50488.1| type IV pilus biogenesis protein PilQ [Vibrio sp. Ex25] Length = 582 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GAT+VT + L T Sbjct: 420 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVT 478 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 479 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 538 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 539 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 580 >gi|284008887|emb|CBA75707.1| protein transport protein HofQ [Arsenophonus nasoniae] Length = 347 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 4/150 (2%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P L A SAS G + Y + S + + + + + TPT+L G++ L Sbjct: 198 IASPRLMASHNHSASIKQGTEIPY--IIQSKNKSQIKFKEAILGMEVTPTILRGGKVRLA 255 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKAD--TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ + P + A + K + T V + G T++L G+ + ++ IP L+ Sbjct: 256 LKISQNTPNTSLLANTYQHIAINKQEISTQVTINHGETLILGGIFQQKKNNQQQKIPYLA 315 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP G LF E+ I TP L+ Sbjct: 316 DIPFFGQLFTKDGKQTYHRELVIFITPQLI 345 >gi|269964448|ref|ZP_06178689.1| Fimbrial assembly protein PilQ [Vibrio alginolyticus 40B] gi|269830786|gb|EEZ85004.1| Fimbrial assembly protein PilQ [Vibrio alginolyticus 40B] Length = 581 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GAT+VT + L T Sbjct: 419 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVT 477 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 478 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 537 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 538 ITNSVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 579 >gi|1246517|emb|CAA60131.1| pulD-like [Escherichia coli] Length = 596 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 25/161 (15%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASF-------------TSGGQHLYKTVSSS 301 ++ +L AL ++ LA P++ + A+F T+ G +++ TV Sbjct: 360 NWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERK 419 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADT 358 T G+ L P + + L I+ EVS + + ++ R Sbjct: 420 T---------VGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 470 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + + T+V+ GLL I+ + +PLL IP+LG LFR Sbjct: 471 AMLVGNCETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFR 511 >gi|320174026|gb|EFW49196.1| General secretion pathway protein D [Shigella dysenteriae CDC 74-1112] Length = 164 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 7/112 (6%) Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L TP + + + I+ EVS+ V G + D+ + RK TTV G IVL GL+ Sbjct: 1 MLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIVLGGLM 58 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 D + +PLL IP++G LF+++ +E+ + + ++P +RD Sbjct: 59 DDQAGESVAKVPLLGDIPLIGKLFKSTADKKEKRNLMV-----FIRPTILRD 105 >gi|332711134|ref|ZP_08431068.1| type II secretory pathway, component HofQ [Lyngbya majuscula 3L] gi|332350116|gb|EGJ29722.1| type II secretory pathway, component HofQ [Lyngbya majuscula 3L] Length = 810 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 85/199 (42%), Gaps = 40/199 (20%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH---DY 312 F L A ++ + L +PTL GQ AS L + V TSVTT D Sbjct: 599 FLLTLQAQITSSNAKILTDPTLVIQEGQEASV-----KLVQEV-----LTSVTTDIDLDG 648 Query: 313 GVVLHFTPTVLSPGRIGLRIQ----------TEVSEPVIGV----------NAGDMPSYR 352 GV V+ + L + T + PVI NA + ++ Sbjct: 649 GVATRTITPVIEEAGLTLTVNVDRIDDNGFITLSTSPVITAPSGTQEFNSDNAQNEITFL 708 Query: 353 VRKADTT--VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+ ++ V L G T++L+G+++D + +P+L IP+LGALFR++ + +E+ Sbjct: 709 SRRELSSGLVRLRDGQTLILSGIIQDTDRTTVSKVPILGDIPLLGALFRSTNKQNQRSEV 768 Query: 411 FIAATPFLVKPVAMRDLSR 429 I LV P M D R Sbjct: 769 II-----LVTPQIMDDTDR 782 >gi|301064238|ref|ZP_07204681.1| type IV pilus secretin PilQ [delta proteobacterium NaphS2] gi|300441683|gb|EFK06005.1| type IV pilus secretin PilQ [delta proteobacterium NaphS2] Length = 756 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 347 DMPSYRVRKADTT-VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 D P R K T+ + + +G T+V+ G+ + GIP L IP+LG LF+ R Sbjct: 675 DSPPGRTEKKITSNLIVKTGDTVVIGGIYQKSEISSDSGIPWLKDIPLLGYLFKAERTQE 734 Query: 406 EETEIFIAATPFLVKPV 422 +TE+ I TP +VK V Sbjct: 735 SKTELLIFLTPTVVKSV 751 >gi|167573316|ref|ZP_02366190.1| Type III secretion system protein [Burkholderia oklahomensis C6786] Length = 302 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 45 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 93 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + A + YG Sbjct: 94 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGER--AVQLEHVTYGT 151 Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + ++ + + E S+ I ++ MP + +T +P Sbjct: 152 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGRIVIDNNTMPLVNRTEINTVARVPHEM 211 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 212 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 265 >gi|315178926|gb|ADT85840.1| fimbrial assembly protein [Vibrio furnissii NCTC 11218] Length = 557 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A++R + ++ P L + Q A G + Y SSS+GATSV + L T Sbjct: 395 LSAMQRESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVT 453 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 454 PQITPDNRLVLDLSVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHS 513 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +PLL +P+LGALFR S ++E+ I TP +V Sbjct: 514 VTSSVDKVPLLGDLPLLGALFRRSYEQMGKSELLIFVTPKVV 555 >gi|149175013|ref|ZP_01853636.1| bacterial type II/III secretion system protein [Planctomyces maris DSM 8797] gi|148845991|gb|EDL60331.1| bacterial type II/III secretion system protein [Planctomyces maris DSM 8797] Length = 308 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + +SGQSA+ SGG++ + + TSV +GV P +L GRI L Sbjct: 173 PEIVTVSGQSATSMSGGKYPV-LIPAGDNQTSVEWKRFGVFCKVEPRLLDNGRIQLEFSP 231 Query: 335 EVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 E+S+ + VN +P VR+ T E+ G T+V+ Sbjct: 232 EISQRDYANAVKVNGLTIPGLTVRRIYTQAEMNLGETLVV 271 >gi|45751673|emb|CAF21320.1| InvG protein [Burkholderia thailandensis] Length = 270 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 50 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 98 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 99 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 156 Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + ++ + + E S+ I ++ MP + +T +P Sbjct: 157 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 216 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ +P++G LFR +R E + + FL++P +R Sbjct: 217 SLLIGGNTRDDVTRRTFRIPGLASLPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 270 >gi|238785761|ref|ZP_04629734.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia bercovieri ATCC 43970] gi|238713344|gb|EEQ05383.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia bercovieri ATCC 43970] Length = 504 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 9/213 (4%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-DR 253 Q+ + VTI +V + Q+G S + S G SF + G + V+ D Sbjct: 267 QIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSGSGSSGTGKNSADGFSTVIGDT 326 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 +F L+AL++ + R L++P++ ++ A K T G Sbjct: 327 SNFMVRLNALQKNSRARVLSQPSVVTLNNIQAVLDKNVTFYTKLQGDKVAKLESITS--G 384 Query: 314 VVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 +L TP ++ + L IQ + I N+ +P + T L G ++ Sbjct: 385 SLLRVTPRMIDADGEKEVLLNLNIQDGQQQAPIS-NSEPLPEIQNSDISTQATLRVGQSL 443 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +L G ++D + + IPLL IP+LG LFR++ Sbjct: 444 LLGGFIQDKQIESQNKIPLLGDIPLLGGLFRST 476 >gi|320107862|ref|YP_004183452.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] gi|319926383|gb|ADV83458.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] Length = 810 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 9/176 (5%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGATSVTTHDY 312 ++AL + R L P + A GQ A+ G + S++T T T D Sbjct: 416 VNALLSDSDTRVLQNPRVRASDGQQATLKIGSKIPVATGSTTSTLTSTATATTQFTYVDV 475 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 GV + TPTV G++ L+++ EVS ++ P R ++L G +L Sbjct: 476 GVNIDMTPTVHLDGQVSLKMKIEVSSQTGTTTISGVSEPIISQRVVQQVIQLKDGEPSIL 535 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 AGLL+ + G P L +IP L F + + EI P +V+ + D Sbjct: 536 AGLLQQSDTKSVSGTPGLGEIPFLKYFFSSQDKKQSSDEIVFLLIPHIVRESPLTD 591 >gi|260770882|ref|ZP_05879811.1| type IV pilus biogenesis protein PilQ [Vibrio furnissii CIP 102972] gi|260614119|gb|EEX39309.1| type IV pilus biogenesis protein PilQ [Vibrio furnissii CIP 102972] Length = 574 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A++R + ++ P L + Q A G + Y SSS+GATSV + L T Sbjct: 412 LSAMQRESKAEIISSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVT 470 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 471 PQITPDNRLVLDLSVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHS 530 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +PLL +P+LGALFR S ++E+ I TP +V Sbjct: 531 VTSSVDKVPLLGDLPLLGALFRRSYEQMGKSELLIFVTPKVV 572 >gi|46398274|gb|AAS91828.1| AscC [Aeromonas hydrophila] Length = 618 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 33/248 (13%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI---TGS-------SSGPSKSF--AADFGGKFVSEG 242 ++ + ++I ++ + L Q+G + TGS ++G K AA G S+G Sbjct: 287 RIEVALSIIDINAEDLSQLGVDWRVGIRTGSNQQVIIKTTGDRKGIEGAAALGSLVDSKG 346 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D+ +L R + LE + ++ PTL A + K Sbjct: 347 LDY----LLARVNL------LENEGNAQVISRPTLLTQENTQAVIDHSETYYVKISGERV 396 Query: 303 GATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADT 358 T YG +L TP V+ I L + E S+ G A +P+ + DT Sbjct: 397 AELQGIT--YGTMLRMTPRVVQMWDKPEISLSLHIEDGSQKPNGTGADGLPTIQRTVVDT 454 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + G ++++ G+ +D++ + +P L IP LGALFR+ ++T+ + F+ Sbjct: 455 IARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRS-----KDTQTRRSVRLFI 509 Query: 419 VKPVAMRD 426 ++P + D Sbjct: 510 IEPRLIDD 517 >gi|325275755|ref|ZP_08141633.1| type II and III secretion system protein [Pseudomonas sp. TJI-51] gi|324099115|gb|EGB97083.1| type II and III secretion system protein [Pseudomonas sp. TJI-51] Length = 76 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 19/36 (52%), Positives = 27/36 (75%) Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + +PILGA FRNS R+ETE+ + TP LV+P+A+ Sbjct: 3 APLPILGAFFRNSTMRRDETELLMIVTPHLVQPLAV 38 >gi|307826274|ref|ZP_07656482.1| type IV pilus secretin PilQ [Methylobacter tundripaludum SV96] gi|307732679|gb|EFO03548.1| type IV pilus secretin PilQ [Methylobacter tundripaludum SV96] Length = 785 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 11/167 (6%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+ ++ P + + +A G Q T ++ + T D + L+ T Sbjct: 618 LQALQIEGKGEIVSNPRVMTMDRCTAVMMQGVQIPVTTPGTANTPPTTTYIDAVLKLNAT 677 Query: 320 PTVLSPGRIGLRI------QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 P + G + + + S PV G P R+ T+V + G T+VL G+ Sbjct: 678 PQITPSGSVIMNLLITKDNANTTSNPVSG-----NPGIDKREIKTSVLVEDGETVVLGGV 732 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + K IP + +P +G LF NS N+ + E+ I TP ++K Sbjct: 733 YEGAESYGKNKIPFFADLPGIGFLFTNSTTNKTKKELLIFVTPKIMK 779 >gi|254229573|ref|ZP_04922986.1| Type II secretory pathway, component PulD [Vibrio sp. Ex25] gi|151937946|gb|EDN56791.1| Type II secretory pathway, component PulD [Vibrio sp. Ex25] Length = 458 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 17/174 (9%) Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 EGGDF+ ++ A+ + + L+ P + + + T G + T S Sbjct: 289 EGGDFNA-----------LIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSE 337 Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 T + D GV L P V+ + L+I + A D+ + R Sbjct: 338 VTDGGNRVQQIERKDVGVSLEVVPHVIG-DHVVLQIMQKSDSVTDSSIASDIIT-NTRTL 395 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 T V++ TI L GL+ + + G+P+L +P+LGALFR+ + N + E+ Sbjct: 396 QTVVKVKDRQTISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKEL 449 >gi|299138919|ref|ZP_07032096.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] gi|298599073|gb|EFI55234.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] Length = 901 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 12/169 (7%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----------TSVTTHDYGVVLHFT 319 R L P + A GQ ++ G + T S ++G T T D GV + T Sbjct: 511 RILQNPRIRATDGQHSTLKIGEKIPVATGSYNSGVSTGLANIGVQTQFTYLDVGVNIDIT 570 Query: 320 PTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 PTV + L+++ E+S + ++ P R A+ ++L G +LAGLL+ + Sbjct: 571 PTVHYDHEVSLKMKVEISASNGNVTISGVTEPIITQRVAEQVIQLKDGEPSILAGLLQQE 630 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + G P L ++P F + ++ EI P +V+ + D Sbjct: 631 DTKTINGTPGLGELPFFKYFFSSQDKVQQSDEIVFLIIPHIVRESILTD 679 >gi|241762850|ref|ZP_04760913.1| type IV pilus secretin PilQ [Acidovorax delafieldii 2AN] gi|241368025|gb|EER62230.1| type IV pilus secretin PilQ [Acidovorax delafieldii 2AN] Length = 712 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/160 (21%), Positives = 75/160 (46%), Gaps = 3/160 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E R ++ P + A G ++ Y ++++ GAT++ + L T Sbjct: 549 LSAMEADGKGRIVSSPRIITADQTKALIEQGTEYPY-SITAPNGATTLAFKKAVLKLEVT 607 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G I L + ++++ G + + T + + +GGT+V+ G+ + + Sbjct: 608 PQITPEGNIILDL--DINKDSRGETTTQGVAIDTKHIKTQILIENGGTVVIGGIFEMEDT 665 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + IP+L +P++G LF++ + E+ + TP ++ Sbjct: 666 NQENKIPVLGDVPVVGNLFKSRTKESTKREMLVFITPKVI 705 >gi|22299887|ref|NP_683134.1| putative general secretion pathway protein D [Thermosynechococcus elongatus BP-1] gi|22296072|dbj|BAC09896.1| tlr2344 [Thermosynechococcus elongatus BP-1] Length = 719 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 9/108 (8%) Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLA 371 + L +P V +P + V P IG M S R+R D G T++LA Sbjct: 584 ITLQLSPEVSAPTDTYDVVFPGVDNPSIGTLLAQRRMESGRIRLRD-------GQTLMLA 636 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+++D + +P+L IP+LG LFR +R+ E+ + TP ++ Sbjct: 637 GIIQDQDRSTVTKVPILGDIPLLGRLFRRESNSRQRNELVVMVTPKII 684 >gi|238023720|ref|YP_002907952.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia glumae BGR1] gi|237878385|gb|ACR30717.1| Type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia glumae BGR1] Length = 605 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 11/179 (6%) Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +V G R+ +V +AL+ + + A P + + A+ + + Y V T A Sbjct: 429 AVVGGAGRYLLASV-NALQSNSKAKIDATPLVATLDNVEATMDNTTK-FYVRVQGYTSAD 486 Query: 306 --SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV---SEPVIGVNAGDMPSYRVRKADTTV 360 SV+T GV L P ++ R G RI+ V + + ++P + +T Sbjct: 487 LYSVST---GVSLRVLPLIVH-DRDGTRIKLSVHIENGSLTQQQVDNIPVITTSQINTQA 542 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D G+P LSKIP+LGALFRN+ E TP ++ Sbjct: 543 FVGEGESLLIAGFTTDKTANGVTGVPFLSKIPLLGALFRNNSDQHNHNETVFLLTPRII 601 >gi|269968410|ref|ZP_06182426.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269826958|gb|EEZ81276.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 450 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 17/174 (9%) Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 EGGDF+ ++ A+ + + L+ P + + + T G + T S Sbjct: 281 EGGDFNA-----------LIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSE 329 Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 T + D GV L P V+ + L+I + A D+ + R Sbjct: 330 VTDGGNRVQQIERKDVGVSLEVVPHVIG-DHVVLQIMQKSDSVTDSSIASDIIT-NTRTL 387 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 T V++ TI L GL+ + + G+P+L +P+LGALFR+ + N + E+ Sbjct: 388 QTVVKVKDRQTISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKEL 441 >gi|325107410|ref|YP_004268478.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] gi|324967678|gb|ADY58456.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] Length = 1546 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 10/67 (14%) Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKE-----GIPLLSKIPILGALFRNSRFNREETEIFI 412 T V +P GGT++L G +++L+E G+P+L+KIP + LF+N+ RE + + Sbjct: 1471 TVVSVPDGGTVLLGG-----VKRLREGRNMAGVPILNKIPYVSRLFKNTGVGRETESLML 1525 Query: 413 AATPFLV 419 TP ++ Sbjct: 1526 MVTPRII 1532 >gi|257464993|ref|ZP_05629364.1| type II secretory pathway, component HofQ [Actinobacillus minor 202] gi|257450653|gb|EEV24696.1| type II secretory pathway, component HofQ [Actinobacillus minor 202] Length = 442 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 4/165 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ ++ +A P L + + AS G + Y + V + + L T Sbjct: 260 LSALEQENSVEIIASPRLLTTNKKLASIKQGTEIPYAIYDRKSETYDVEFKEAVLGLQVT 319 Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLK 375 P + +I + + Q + V+ +G+ S ++ +T V G TIVL G+ + Sbjct: 320 PHISKDNQILMDLVVTQNSQGQSVVSSTSGNAAVSIDKQELNTQVFAKHGETIVLGGIFQ 379 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P+L IP L LF + + E+ I TP++++ Sbjct: 380 HLKTKDSDRVPVLGSIPFLKHLFSYQKDQISKRELVIFVTPYIIQ 424 >gi|153951393|ref|YP_001397557.1| type II and III secretion system protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938839|gb|ABS43580.1| bacterial type II and III secretion system protein [Campylobacter jejuni subsp. doylei 269.97] Length = 391 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 14/221 (6%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ K+TI E D LK+ G + S + P K F + ++ D+ Sbjct: 168 QLKFKITILETNLDFLKEKGSKLS-SLFQGNPIKDFHLFVNLITIPYNSQNNIVSS-DKK 225 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHD 311 F + L+ LE R ++ P L A S F+S + S+S T V T++D Sbjct: 226 GFYSTLNFLENQRITRIVSNPFLLARSNTEVFFSSVQNIPFLKNSTSVSDTRVSQNTSYD 285 Query: 312 Y---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 Y G+ + P ++ ++ + V + + N + S + K+ T L G + Sbjct: 286 YRDVGLQVTLKPVIIG-DKVDFSLHLIVEDLLSNSNLTPVTSKKELKSSYT--LKKGELL 342 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 VL+G+ K GIP L I LG LF + R+ET Sbjct: 343 VLSGINKVTNTNYTSGIPYLKDIWFLGNLF---KIQRKETN 380 >gi|83717183|ref|YP_439025.1| type III secretion system protein BsaO [Burkholderia thailandensis E264] gi|83651008|gb|ABC35072.1| type III secretion system protein BsaO [Burkholderia thailandensis E264] Length = 619 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 362 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 410 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 411 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 468 Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + ++ + + E S+ I ++ MP + +T +P Sbjct: 469 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 528 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ +P++G LFR +R E + + FL++P +R Sbjct: 529 SLLIGGNTRDDVTRRTFRIPGLASLPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 582 >gi|262273424|ref|ZP_06051238.1| type IV pilus biogenesis protein PilQ [Grimontia hollisae CIP 101886] gi|262222402|gb|EEY73713.1| type IV pilus biogenesis protein PilQ [Grimontia hollisae CIP 101886] Length = 578 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 2/103 (1%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGL 373 L TP + ++ L +Q +P V AG + + ++ T V + G T+VL G+ Sbjct: 471 LSVTPQITPDNKLVLDLQVTQDKPAGTVKAGTGEAMAINTQRIGTQVLVNDGETVVLGGI 530 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + ++ + + IPLL IP LG LFR + + E+ I TP Sbjct: 531 YQHEMMEGVDKIPLLGDIPGLGQLFRRNYETTGKRELLIFVTP 573 >gi|172036496|ref|YP_001802997.1| general secretion pathway protein D [Cyanothece sp. ATCC 51142] gi|171697950|gb|ACB50931.1| general secretion pathway protein D [Cyanothece sp. ATCC 51142] Length = 778 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + L G T++L+G++ + Q +PLL IP+LGALFR+ + TE+ + TP Sbjct: 688 IRLRDGQTLILSGIISESDQSTTSKVPLLGDIPLLGALFRSQTDTSQRTEVIVLLTP 744 >gi|254302334|ref|ZP_04969692.1| possible outer bacterial membrane secretin family protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322526|gb|EDK87776.1| possible outer bacterial membrane secretin family protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 515 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 23/240 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV + I ++ ++ +++GF + S S A GK G S ++ + Sbjct: 269 QVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAIILGK-AGLNGVGSTVNIVRQ 327 Query: 254 FS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 F+ T ++ LE + + PTL SG+ F + + S Sbjct: 328 FNNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKSHRDDKKDRY 387 Query: 309 TH----DYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV 353 + + G+++ P + I L I E+S+ + +N+G S +V Sbjct: 388 SEPVFKEAGLIMKVKPIIKDNDYIILEISLELSDFKFKRNVLNLKDINSGTYNSEGGSKV 447 Query: 354 -RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++I Sbjct: 448 GRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 507 >gi|126659012|ref|ZP_01730153.1| general secretion pathway protein D [Cyanothece sp. CCY0110] gi|126619669|gb|EAZ90397.1| general secretion pathway protein D [Cyanothece sp. CCY0110] Length = 743 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + L G T++L+G++ + Q +PLL IP+LGALFR+ + TE+ + TP Sbjct: 653 IRLRDGQTLILSGIISESDQSTTSKVPLLGDIPLLGALFRSQTDTSQRTEVIVLLTP 709 >gi|167566206|ref|ZP_02359122.1| Type III secretion system protein [Burkholderia oklahomensis EO147] Length = 315 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 58 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 106 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + A + YG Sbjct: 107 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGER--AVQLERVTYGT 164 Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + ++ + + E S+ I ++ MP + +T +P Sbjct: 165 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGRIVIDNNTMPLVNRTEINTVARVPHEM 224 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 225 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 278 >gi|146298381|ref|YP_001192972.1| type II and III secretion system protein [Flavobacterium johnsoniae UW101] gi|146152799|gb|ABQ03653.1| GspD-like type II secretion system secretin protein [Flavobacterium johnsoniae UW101] Length = 634 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 10/175 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-----KTVSSSTG-----A 304 +F L LE + ++ + P + ISG A + G Y + ++S+ G + Sbjct: 459 AFYLNLKLLENNSIVKVESTPKIATISGHEAKLSIGETSYYFEQSNRLINSNIGNDILNS 518 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + + D + L P V + L I E S + P +K ++ V + + Sbjct: 519 GTWKSTDANLSLSIKPYVSIDENVTLTIVVEKSSFLGRAGETAPPGKATQKFESLVRVKN 578 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G I+L GL + + G PLLS+IPI+ F + + + +++ I P +V Sbjct: 579 GEMILLGGLDELKKEDSGSGTPLLSRIPIIKWFFSSRKKGKNNSKLHIFIKPTVV 633 >gi|257142133|ref|ZP_05590395.1| type III secretion system protein BsaO [Burkholderia thailandensis E264] Length = 600 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 343 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 391 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 392 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 449 Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + ++ + + E S+ I ++ MP + +T +P Sbjct: 450 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 509 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ +P++G LFR +R E + + FL++P +R Sbjct: 510 SLLIGGNTRDDVTRRTFRIPGLASLPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 563 >gi|148979183|ref|ZP_01815362.1| fimbrial assembly protein [Vibrionales bacterium SWAT-3] gi|145961941|gb|EDK27231.1| fimbrial assembly protein [Vibrionales bacterium SWAT-3] Length = 564 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GATSV + L T Sbjct: 402 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVT 460 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 461 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 520 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + +PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 521 VSSTVDKVPLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 562 >gi|94496757|ref|ZP_01303332.1| putative type III secretion protein YscC [Sphingomonas sp. SKA58] gi|94423770|gb|EAT08796.1| putative type III secretion protein YscC [Sphingomonas sp. SKA58] Length = 599 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 97/243 (39%), Gaps = 30/243 (12%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----------- 244 V L+ TI ++ D L+++G S + A FGG V G+ Sbjct: 334 VELEATIIDINVDRLRELGINWRFR------SGDWGALFGGDIVRRTGNPLTDSLNTGSV 387 Query: 245 ---FSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 S+ G++ F + ALE A + ++ P L +S A F + Y V+ Sbjct: 388 NRGLSLSGIIGANNEFIARISALEEKGAAKVVSRPQLVTLSNVEAVFDRT-RTFYVRVAG 446 Query: 301 STGATSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADT 358 + G VL P VL G+ +R+ V + + D +P +T Sbjct: 447 DR-QVDLFNVTAGTVLRVNPHVLVDNGQPRIRMVVNVEDGALLDGTVDRIPVVERASVNT 505 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + G +++L GL + + IP+L +IP+LG LF++ R+ E FL Sbjct: 506 QALIAEGESLLLGGLTVNSDMDAETAIPVLGQIPVLGELFKSRSKRRQHVERL-----FL 560 Query: 419 VKP 421 + P Sbjct: 561 ISP 563 >gi|237753431|ref|ZP_04583911.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229375698|gb|EEO25789.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 487 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 34/220 (15%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 SITG S G S +G S G S ++ L+ +++++ P + Sbjct: 268 SITGGSKGSS----VQYGLNIFSAG-----------LSLNRIVEFLKGYGEVQSISNPKV 312 Query: 278 TAISGQSASFTSGG------QHLYKTVSSSTGATSVTTHDY-----GVVLHFTPTVLSPG 326 ++ Q A + G ++Y+ ++ T T+ T ++Y GV+L TP V Sbjct: 313 LTLNNQPAMISVGDILRYKKSNIYQNTNAQTTLTN-TNNEYPSIFAGVLLDITPLVFEDS 371 Query: 327 RIGLRIQTEVS-----EPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I L++ ++ + I +A D P + + + V++ + ++L GL+ + + Sbjct: 372 -IMLKVNPSITKTKDMQTKIAASAFDAPPNLTTNQLSSIVKVKNNQKVILGGLIAQNTAK 430 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IPLL IP++ LF + + EI TP +++ Sbjct: 431 ESNKIPLLGDIPLIKPLFSYTHDSISTEEIVFIITPRIIE 470 >gi|226227920|ref|YP_002762026.1| hypothetical protein GAU_2514 [Gemmatimonas aurantiaca T-27] gi|226091111|dbj|BAH39556.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 735 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 41/197 (20%), Positives = 86/197 (43%), Gaps = 30/197 (15%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------ 304 L R+ L+AL+ ++ +EP++T ++ +SA G + + + +S G Sbjct: 532 LGRYQLTAFLNALQTSSLADVQSEPSITILNNRSAEIFVGQEIPIRVIDASAGGQGGGGG 591 Query: 305 ---------------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342 +V+ + G+ L TP + + + L I+ E S I Sbjct: 592 GGGGGGGGAAGQPNAAAFFPRATVSKEEAGIKLSVTPQITNNKMVMLNIKAENSSAEIAS 651 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + G + + ++A++ V + G V+ GL + + + GIP+L +P +G +F + Sbjct: 652 TDVGVI--FNRQRAESQVLVADGEAAVIGGLTVTETTRFRSGIPVLMNLPFVGRIFSQNT 709 Query: 403 FNREETEIFIAATPFLV 419 N + ++ I TP ++ Sbjct: 710 KNETKRDLLILVTPHIL 726 >gi|37522007|ref|NP_925384.1| hypothetical protein glr2438 [Gloeobacter violaceus PCC 7421] gi|35213006|dbj|BAC90379.1| glr2438 [Gloeobacter violaceus PCC 7421] Length = 493 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T V+ G++++ +QL + +PLL +P+LGALFR E E+ + TP ++ Sbjct: 423 LRLRDGETFVIGGVIREIDRQLVQKMPLLGDLPVLGALFRFQSNQHERREVALMVTPHIL 482 Query: 420 K 420 K Sbjct: 483 K 483 >gi|322515010|ref|ZP_08068020.1| type IV pilus secretin PilQ [Actinobacillus ureae ATCC 25976] gi|322118999|gb|EFX91171.1| type IV pilus secretin PilQ [Actinobacillus ureae ATCC 25976] Length = 431 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 1/162 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + +A P L + + AS G + Y + ++ + + L T Sbjct: 253 LTALEQENNVEIIASPRLLTTNKKPASIKQGTEIPYVLYNRKDEVKNIEFKEAVLGLQVT 312 Query: 320 PTVLSPGRIGLR-IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + + +I L + T+ S + + ++ +T V G TIVL G+ + Sbjct: 313 PHISNDKQILLDLVVTQNSPNSTSSTVHGLVTIDKQELNTQVFAQHGETIVLGGIFQHLT 372 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +P+L IP++ LF +S + E+ I TP++VK Sbjct: 373 AKGEDRVPILGSIPVIKKLFSHSSDKISKRELVIFVTPYIVK 414 >gi|167577430|ref|ZP_02370304.1| type III secretion system protein BsaO [Burkholderia thailandensis TXDOH] Length = 339 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 82 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 130 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 131 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 188 Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + ++ + + E S+ I ++ MP + +T +P Sbjct: 189 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 248 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 249 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 302 >gi|318040699|ref|ZP_07972655.1| general secretory pathway protein D [Synechococcus sp. CB0101] Length = 167 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 8/92 (8%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + G T++L G++ D+ + + P+L +P++G FR S +R ++E+ I TP +V Sbjct: 81 VRVRDGQTLILTGVISDEDRSVVTKWPILGDLPLVGQFFRRSSGDRRKSELVIMVTPRIV 140 Query: 420 KPVAMRDLSRPDDHYSVE---DDAKAFFFNRV 448 K D D Y + DA+ F ++ V Sbjct: 141 K-----DDQGGDYGYGYQPSTQDARGFVYSGV 167 >gi|45751689|emb|CAF21328.1| InvG protein [Burkholderia thailandensis] Length = 277 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 52 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 100 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 101 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 158 Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + ++ + + E S+ I ++ MP + +T +P Sbjct: 159 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 218 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ +P++G LFR +R E + + FL++P +R Sbjct: 219 SLLIGGNTRDDVTRRTFRIPGLASLPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 272 >gi|163803103|ref|ZP_02196987.1| DNA-binding transcriptional regulator OxyR [Vibrio sp. AND4] gi|159173095|gb|EDP57927.1| DNA-binding transcriptional regulator OxyR [Vibrio sp. AND4] Length = 559 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GATSV + L T Sbjct: 397 LSALQQESKAEIVSSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVT 455 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 456 PQITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHS 515 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR + N ++E+ I TP +V Sbjct: 516 ITNSVDKVPLLGDLPLLGALFRRTYENVGKSELLIFVTPKVV 557 >gi|330815292|ref|YP_004358997.1| Type II/III secretion system protein [Burkholderia gladioli BSR3] gi|327367685|gb|AEA59041.1| Type II/III secretion system protein [Burkholderia gladioli BSR3] Length = 658 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 10/130 (7%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G L G + V + L P + G + L + ++++ +G P+ Sbjct: 473 GTELPYQAKVGRGVSGVQFRRATLKLEVEPQITPDGHVVLDL--DIAKDSVGEQTDAGPA 530 Query: 351 YRVRKADTTVELPSGGTIVLAGLLK----DDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + T VE+ +GGT+ + G+ + DD+ + +P+L KIP+LGALFR+ + Sbjct: 531 IHTKHVRTRVEVENGGTVSIGGIYERNEWDDVTR----VPVLGKIPVLGALFRHKARREQ 586 Query: 407 ETEIFIAATP 416 +E+ + TP Sbjct: 587 SSELVVYITP 596 >gi|45751693|emb|CAF21330.1| InvG protein [Burkholderia thailandensis ATCC 700388] Length = 282 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 51 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 99 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 100 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 157 Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + ++ + + E S+ I ++ MP + +T +P Sbjct: 158 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 217 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ +P++G LFR +R E + + FL++P +R Sbjct: 218 SLLIGGNTRDDVTRRTFRIPGLASLPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 271 >gi|297622120|ref|YP_003710257.1| putative general secretion pathway protein D [Waddlia chondrophila WSU 86-1044] gi|297377421|gb|ADI39251.1| putative general secretion pathway protein D [Waddlia chondrophila WSU 86-1044] Length = 865 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 37/71 (52%) Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P R+ V +P G +++ GL + + + IP L ++P LG LF ++ EET Sbjct: 729 PQVNRRQIINQVNIPDGQAVIIGGLQRKQGSDMCDKIPFLGELPGLGKLFSTTQLTDEET 788 Query: 409 EIFIAATPFLV 419 E+ I TP ++ Sbjct: 789 ELVIFMTPKII 799 >gi|104783254|ref|YP_609752.1| type II secretion system protein D [Pseudomonas entomophila L48] gi|95112241|emb|CAK16968.1| putative type II secretion system protein D [Pseudomonas entomophila L48] Length = 651 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 14/147 (9%) Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ F +G T +++ ++ + GV L P V + L I EVS Sbjct: 469 GQEVPFVTGS----VTQNNANPYQTIERKEVGVKLRIKPQVNVDNSVRLDIVQEVSSIAE 524 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN- 400 A D+ + + R+ T V + G ++L GL+ D+ + +PLL IP LG LFR+ Sbjct: 525 SRAASDVITNK-REIKTKVMVEDNGLVILGGLISDERSTSNQRVPLLGDIPGLGRLFRSD 583 Query: 401 -SRFNREETEIFIAATPFLVKPVAMRD 426 S+ ++ +FI +P +RD Sbjct: 584 ASKGTKQNLMVFI-------RPRILRD 603 >gi|123443753|ref|YP_001007724.1| general secretion pathway protein D [Yersinia enterocolitica subsp. enterocolitica 8081] gi|27529236|emb|CAC83029.1| Yts1D protein [Yersinia enterocolitica (type 0:8)] gi|122090714|emb|CAL13590.1| general secretion pathway protein D [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 658 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 107/255 (41%), Gaps = 21/255 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--HSITGSSSGPSKSFAADFGGKFV 239 ++V+N L+I QV ++ I EV+ +G Q + G S+ P +A Sbjct: 348 EQVINQLDIR-RAQVLVEAIIVEVQDSDALNLGVQWFNRNGGGSNFPENGASA---SSIT 403 Query: 240 SEGGDFSVKGVLD------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ- 292 S S+KG+ R ++ + AL + LA P++ + A F+ G + Sbjct: 404 SNDMGSSLKGITGLATGFYRGNWSGLFTALRTNSQNDILATPSIVTLDNMEAEFSVGQEV 463 Query: 293 HLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAG 346 + ++TG T D G+ L P + + L I+ EVS E G G Sbjct: 464 PVLSGSQTTTGDNIFRTVDRKSVGIKLKVKPQINKGDSVLLEIEQEVSSVAEKAPG-GTG 522 Query: 347 DM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 D+ ++ R V + S +V+ GLL + +PLL IP +G LFR++ Sbjct: 523 DLGATFNTRMVKNAVMVGSNNIVVVGGLLDSTSHDVTSKVPLLGDIPGIGFLFRSTSQKM 582 Query: 406 EETEIFIAATPFLVK 420 + + + P +++ Sbjct: 583 VKRNLMLFIRPTIIR 597 >gi|45751671|emb|CAF21319.1| InvG protein [Burkholderia thailandensis] Length = 285 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 51 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 99 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 100 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 157 Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + ++ + + E S+ I ++ MP + +T +P Sbjct: 158 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 217 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ +P++G LFR +R E + + FL++P +R Sbjct: 218 SLLIGGNTRDDVTRRTFRIPGLASLPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 271 >gi|94987602|ref|YP_595535.1| putative type III secretion protein YscC [Lawsonia intracellularis PHE/MN1-00] gi|94731851|emb|CAJ55214.1| putative type III secretion protein YscC [Lawsonia intracellularis PHE/MN1-00] Length = 583 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 50/248 (20%), Positives = 103/248 (41%), Gaps = 27/248 (10%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----------KFVSEGGDF 245 V + I ++ + + +GF ++ SS S + DF K EGG Sbjct: 289 VEIHAAIVDIDSEFKRDLGF--TLQQGSSKKSMTMGGDFSTTQQSLPLEITKGTVEGGGL 346 Query: 246 SVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + + + F + ALE R L +P++ + A+ + + + T Sbjct: 347 TYSTIYSKGVEFFLARVQALETEGEARVLGKPSVLTVDNIQATLENTSTYYIQVQGYQT- 405 Query: 304 ATSVTTHDYGVVLHFTPTVL--SPGRIGLRIQTEV--------SEPVIGVNAGDMPSYRV 353 + + G VL TP ++ + G +++ + ++P +G N +P + Sbjct: 406 -VDLFKVESGTVLRVTPHIIYNNDGTKSIKLVVAIEDNQNDNSTDPTVGSNVV-LPPIKQ 463 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + +T + +G ++++ G + +GIP+L IPI+G LF+ + ++ E I Sbjct: 464 TRINTQGVVNTGQSLLIGGYYYEQQGVNDKGIPILKDIPIIGYLFKTNTKTSKKMERLIL 523 Query: 414 ATPFLVKP 421 TP ++ P Sbjct: 524 ITPRIIMP 531 >gi|312963506|ref|ZP_07777988.1| general secretion pathway protein D [Pseudomonas fluorescens WH6] gi|311282312|gb|EFQ60911.1| general secretion pathway protein D [Pseudomonas fluorescens WH6] Length = 641 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 58/252 (23%), Positives = 119/252 (47%), Gaps = 20/252 (7%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGK 237 S+ +K++ ++IA + +VT+ + + EV + +G Q+ + G S G + A G Sbjct: 313 SAVEKLVEAIDIA-QSEVTIDIQVLEVSLNDELNLGIQYPESVGLSVGNLANVPAGLAGI 371 Query: 238 FVSEGGDFSVKGV------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 +S +++G+ LD S ++ L+R+ TLA P + + + A+ G Sbjct: 372 PLS-----ALRGINGDNILLDAGSTSARINMLQRSGNTVTLANPRVRVRNREEAAVNIGD 426 Query: 292 Q--HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347 + + T ++ +SVT D G+ + P + + L + E+S + A + Sbjct: 427 KVPMVTTTTANDITTSSVTYQDVGLQITVKPNISLSDEVNLELNVEMSHITKRIPASENV 486 Query: 348 MPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFN 404 ++ + R T + + T +++GL++ G+P LS+IP +G LF ++ Sbjct: 487 QATFELGSRSTKTLLTARNNETQIVSGLIRTADVDEGAGLPWLSQIPWIGKKLFGTNQST 546 Query: 405 REETEIFIAATP 416 +++TEI + TP Sbjct: 547 QQKTEIILLLTP 558 >gi|289667997|ref|ZP_06489072.1| fimbrial assembly protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 631 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAG 372 L TPT+ + R+ L + + E ++ G +P R+ +T V + G T+V+ G Sbjct: 518 LKVTPTITNDNRVFLNMNVKKDEVARFIDLPLYGTVPEINRREVNTAVLVGDGETVVIGG 577 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 578 VYEFTDRESIAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 625 >gi|242310207|ref|ZP_04809362.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523504|gb|EEQ63370.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 502 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 52/234 (22%), Positives = 98/234 (41%), Gaps = 33/234 (14%) Query: 226 PSKSFAADFGG----------KFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRT 271 P+ S A FGG V + G +++ ++ FS ++ L+ + + Sbjct: 259 PTFSEGASFGGGGEVGNVSGINIVGQNGSNALQYGINIFSQGLSLNRIIEFLKTYGKVES 318 Query: 272 LAEPTLTAISGQSASFTSGG------QHLYKTVSSSTGATSVTTHDY-----GVVLHFTP 320 ++ P + ++ Q A + G +Y+ ++ T T+ T ++Y GV+L TP Sbjct: 319 ISNPKVLTLNNQPAMISVGDILRYQKSSIYQNTNAQTTLTN-TDNEYPSIFAGVLLDITP 377 Query: 321 TVLSPGRIGLRIQ---TEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLL 374 + I L+I T+ E + A P+ + + V + + IVL GL+ Sbjct: 378 VIFGD-EIMLKINPSITKTKENRTEIPATAFESPPNLTTNQLSSIVSVKNNQKIVLGGLI 436 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +I ++ IP+L IP++ LF S+ EI P ++ +LS Sbjct: 437 SKNISSIENKIPVLGSIPLIKPLFSYSQDIERTEEIVFIIEPKIISQEIQENLS 490 >gi|167817938|ref|ZP_02449618.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei 91] Length = 403 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 16/188 (8%) Query: 234 FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G+ GD S RF+ + + AL + + ++ P + +SG+ G Sbjct: 216 LSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVG 275 Query: 291 GQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Q ++ SS T S+T D G++ PTV+ I L+++ E+S+ V Sbjct: 276 QQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMR-DVIELKVREEISDFVATKTG 334 Query: 346 GDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 D P+ R+ T L G +VL GL++D + G L + F + Sbjct: 335 VDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDATARSGYSWLP------SFFDGRSSS 388 Query: 405 REETEIFI 412 ++ TE+ + Sbjct: 389 KQRTEVLL 396 >gi|153829308|ref|ZP_01981975.1| msha biogenesis protein mshl [Vibrio cholerae 623-39] gi|148875208|gb|EDL73343.1| msha biogenesis protein mshl [Vibrio cholerae 623-39] Length = 137 Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 9/109 (8%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVL 370 V+LH P V+ ++ + + + ++P R +R++D+ + G +V+ Sbjct: 12 NVLLHVHPAVIE-------VEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVI 64 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GL+K + +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 65 GGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 113 >gi|315918572|ref|ZP_07914812.1| general secretion pathway protein D [Fusobacterium gonidiaformans ATCC 25563] gi|313692447|gb|EFS29282.1| general secretion pathway protein D [Fusobacterium gonidiaformans ATCC 25563] Length = 419 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 53/249 (21%), Positives = 100/249 (40%), Gaps = 20/249 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 K+M ++I G+ QV + I ++ +D+ ++GF S +K A G + V Sbjct: 164 KLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEESVGNS 222 Query: 243 GDF--SVKGVLDRFSFET-----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G S ++ +FS T L LE ++ + P++ G F + + Sbjct: 223 GPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITEEVIV 282 Query: 296 KTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPS 350 S + + G++L P + + L I E+S+ N + Sbjct: 283 GEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNQKKDWN 342 Query: 351 YRV-------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + R T + + + TI++ GL + + + +P LS IP LG LF++ Sbjct: 343 FNAQGGSKMGRSLSTRIHVKNKETILIGGLSRSTHRNTENRVPFLSDIPGLGYLFKSESK 402 Query: 404 NREETEIFI 412 ET+++I Sbjct: 403 KDAETDMYI 411 >gi|157364734|ref|YP_001471501.1| type II and III secretion system protein [Thermotoga lettingae TMO] gi|157315338|gb|ABV34437.1| type II and III secretion system protein [Thermotoga lettingae TMO] Length = 385 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 9/223 (4%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV + V ++EV +D L +IG G + G ++ + D+ G SV+ D F Sbjct: 166 QVKISVVVSEVSKDNLGEIGLDQ--IGYTFGANQQYNEDWTAVLGLISGVLSVQT--DVF 221 Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + L ALE+ + A+P + + A G + + + G T+ T D G Sbjct: 222 GTIVARLRALEQDQKAKIKADPWIIVQENKPARLFVGQREII-ILQPEEGTTTTETVDVG 280 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V + T V+ + + + +S + + R + TT+ + SG T+V++GL Sbjct: 281 VGIDITARVVGKNELEINVAPNISHFTTAQTTSSLSTKR-SELSTTLRIQSGQTVVISGL 339 Query: 374 LKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAA 414 ++ GIPLL IP+L LF ++ ++ E IF++A Sbjct: 340 TVENSSDGYTGIPLLGNIPLLRYLFGVKSDSQSQREVIIFLSA 382 >gi|253988518|ref|YP_003039874.1| type III secretion outer membrane protein pscc [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637900|emb|CAR66529.1| type iii secretion outer membrane protein pscc [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779968|emb|CAQ83129.1| type iii secretion outer membrane protein pscc [Photorhabdus asymbiotica] Length = 618 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 24/237 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAADFGGKFVSEGGD 244 ++ + ++I ++ D L ++G + G ++GP + GGK S G Sbjct: 283 RIEVALSIVDINADNLSELGVDWQV-GINTGPRHIIDITTSAREKEKEKNGGKGESIGST 341 Query: 245 FSVKGVLDRFSFETVLHA---LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 ++ ++DR + +L LE + + ++ PTL A + K Sbjct: 342 -ALGSLVDRRGLDYLLAKITLLESKGSAQVVSRPTLLTQENTQAVIDHNETYYVKVEGER 400 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 T YG +L TP V+ G + L I+ +P G +P+ Sbjct: 401 VAELKSLT--YGTMLRMTPRVIKIGDTPEISLNLHIEDGNQKPN-SSGLGGIPTINRTIV 457 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIFI 412 DT + G ++++ G+ +D++ + +P L IP LG LFR + R +FI Sbjct: 458 DTVARVGHGQSLLIGGIYRDEMSETVRKVPFLGDIPYLGVLFRTTTEQVRRSVRLFI 514 >gi|51243965|ref|YP_063849.1| type II protein secretion protein [Desulfotalea psychrophila LSv54] gi|50875002|emb|CAG34842.1| related to type II protein secretion protein [Desulfotalea psychrophila LSv54] Length = 559 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 57/264 (21%), Positives = 104/264 (39%), Gaps = 52/264 (19%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADF----GGKFVSEGGDFSV-----------KG 249 +++++ KQI I + + S D+ GG GG + G Sbjct: 299 LKKELYKQIAIDAKIIEVTLSDASSIGIDWSNVLGGDGFKLGGKVNYGDATDAIFHNGSG 358 Query: 250 VLDRFSFET-----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-------KT 297 LD + E+ ++ AL + L+ P L+ ++GQ A + G Y + Sbjct: 359 FLDTITLESTDFHVLIKALNEQGDTKVLSNPKLSVMNGQPALISVGRSITYISEIEADRD 418 Query: 298 VSS-------------------STGATSVTTHDYGVVLHFTPTV--LSPGRIGLRIQ-TE 335 SS G T+ D ++++ P L P + G I+ + Sbjct: 419 TSSIGTSTITYTTETDSLLSGLGLGITATVLDDSEIIMNLVPVTSELVPFKDGEEIEYRQ 478 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V + G + G +P VR+ TTV + G T+++ GL+ + +P+L IP L Sbjct: 479 VGDD--GASVG-LPVLNVREMSTTVRVKDGETLIIGGLISESNSTTGSSVPILGSIPGLK 535 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF ++++ E+ I P ++ Sbjct: 536 YLFGYEGKSKQKKELVILIQPRII 559 >gi|171462916|ref|YP_001797029.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192454|gb|ACB43415.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 209 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 5/167 (2%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + L ALE + L+ P + A+ G + Y+T S+ + + + Sbjct: 47 LQAELSALESEGQGKILSNPRIMTGDQVKATIELGTELPYQT--SNQNGSKLQFRKANLR 104 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L P + G+I + + +++ +G+ + + + V + +GGT ++ G+L+ Sbjct: 105 LEALPKIHPDGKISMLVG--INKDTVGMKTEQGYAIDTKSLSSEVTVENGGTAIIGGILQ 162 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP-FLVKP 421 ++ + IPLL IP++G FR+ +++TE+ + TP L KP Sbjct: 163 TTEREDEVKIPLLGDIPLIGHFFRHKSKLQDKTELLVFLTPTVLDKP 209 >gi|238756264|ref|ZP_04617580.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473] gi|238705519|gb|EEP97920.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473] Length = 660 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%) Query: 267 TAIRT------LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVL 316 TA+RT LA P++ + A F+ G + T S +T +V G+ L Sbjct: 434 TALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPILTGSQTTTGDNIFRTVDRKSVGIKL 493 Query: 317 HFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAG 372 P + + L I+ EVS E G GD+ ++ R V + S +V+ G Sbjct: 494 KVKPQINKGDSVLLEIEQEVSSVAEKTPG-GTGDLGATFNTRTVKNAVMVGSNNIVVVGG 552 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 LL + +PLL IP +G LFR++ + + + P +++ Sbjct: 553 LLDSTSHDITSKVPLLGDIPGIGFLFRSTSQKMVKRNLMLFIRPTIIR 600 >gi|32266614|ref|NP_860646.1| hypothetical protein HH1115 [Helicobacter hepaticus ATCC 51449] gi|32262665|gb|AAP77712.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 533 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 11/126 (8%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP--------VIGVNAGDMPSYRVRKADTTVELPS 364 G++L TP++ G+I L+I +++ I +NA P+ ++ + V+L Sbjct: 385 GILLDVTPSI-KDGKIILKINPSITKTKDISIENQTIALNAP--PNLSTKQLSSLVQLKD 441 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G IVL GL+ Q IP+L IP + F + +E E+ I P +V+ A Sbjct: 442 GEQIVLGGLIDKTEGQTTRKIPILGDIPFVKYFFSYKQNIKETQEMVIIIAPHIVRLDAN 501 Query: 425 RDLSRP 430 + P Sbjct: 502 ETAASP 507 >gi|71906532|ref|YP_284119.1| type II and III secretion system secretin [Dechloromonas aromatica RCB] gi|71846153|gb|AAZ45649.1| type II and III secretion system protein:Secretin, N-terminal:Secretin/TonB, short N-terminal [Dechloromonas aromatica RCB] Length = 585 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 23/181 (12%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------- 305 +F +L LE ++ L+ P + + Q A G + T S+ T Sbjct: 367 NFAALLSFLEGQGDVQVLSSPRIATTNNQKAVLKVGTDDYFVTGISTNVTTGTGTGGNVV 426 Query: 306 --SVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYR------ 352 ++T + G+ L TP + G I L + VS E VN GD+ +Y Sbjct: 427 TPNITLQPFFSGISLDVTPQIDDEGNIILHVHPSVSVVEEKSKSVNLGDLGTYTLPLASS 486 Query: 353 -VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + ++D+ V + G + + GL+ + + G+P +S +P LG LF + + E+ Sbjct: 487 TINESDSIVRVQDGSIVAIGGLMSQEQNTNRYGLPGISGVPGLGLLFGQKSVSNRKRELV 546 Query: 412 I 412 I Sbjct: 547 I 547 >gi|238760627|ref|ZP_04621755.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236] gi|238701160|gb|EEP93749.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236] Length = 657 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 15/149 (10%) Query: 267 TAIRT------LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVL 316 TA+RT LA P++ + A F+ G + T S +T +V + G+ L Sbjct: 431 TALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPILTGSQTTTGDNIFRTVDRKNVGIKL 490 Query: 317 HFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAG 372 P + + L I+ EVS E G GD+ ++ R V + S +V+ G Sbjct: 491 KVKPQINKGDSVLLEIEQEVSSVAEKAPG-GTGDLGATFNTRMVKNAVMVGSNNIVVVGG 549 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNS 401 LL + +PLL IP +G LFR++ Sbjct: 550 LLDSTSHDVTSKVPLLGDIPGIGFLFRST 578 >gi|219566964|dbj|BAH04995.1| Hrp conserved transmembrane protein [Ralstonia solanacearum] Length = 568 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + AL++ R A P + + A + Q+ Y V+ A + GV L Sbjct: 407 ISALQQTDQARITANPKVATLDNTEAVMDNR-QNFYVPVAGYQSA-DLYAISAGVSLRVL 464 Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ G RI + + E + + G++P + DT + G ++++AG + Sbjct: 465 PMVVMDGGTVRIRMNVHIEDGQ-ITSQQVGNLPITSQSEIDTQALINEGDSLLIAGYSVE 523 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +P LSKIP++GALFR + + + TP ++ P Sbjct: 524 QQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTPRVITP 568 >gi|119476023|ref|ZP_01616375.1| type II and III secretion system protein [marine gamma proteobacterium HTCC2143] gi|119450650|gb|EAW31884.1| type II and III secretion system protein [marine gamma proteobacterium HTCC2143] Length = 617 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 14/219 (6%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + ++ I EV +D + IG + + + S++ +++ +FG + + E G S+ G Sbjct: 334 ILVEAIIVEVSKDFSQTIGVEWNTSLSANDGAEALT-NFGLRNIDESGAVSLLGAGLNLG 392 Query: 256 F------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----- 304 F + A+ L+ P + + + A G + T S+ + Sbjct: 393 FYRNGSLRVLAQAIANENDANILSSPRIMTMDNEEAEILVGSNVPFITGQSTGSSSSTGD 452 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 T++ HD G+ L TP + I L I EV + R T V + Sbjct: 453 PFTTIERHDIGLTLKITPQINEGDSITLDILQEVETISEATTVANDIVTNKRSIKTKVIV 512 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +VL GL+ DD Q+L +P L +P+LG LFR + Sbjct: 513 EDDAILVLGGLVSDDTQELVSKVPFLGDLPLLGGLFRTT 551 >gi|296123921|ref|YP_003631699.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] gi|296016261|gb|ADG69500.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] Length = 1469 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 10/117 (8%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE------PVI----GVNAGDMPSYRVRKADTTVEL 362 G++L TP + G I + + E S+ P+ N + P + A T + + Sbjct: 1192 GIILTVTPRISPDGTIVMELIAEKSQFRGNGVPIFTDATNGNVIESPIKDISAARTAISV 1251 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P+G T+V+ G++ + + +P + IPI+G LFR + TE+ I TP ++ Sbjct: 1252 PNGQTVVMGGMITATDETSERKVPFIGDIPIVGHLFRYDSKSHVRTELLIFLTPRVI 1308 >gi|167838357|ref|ZP_02465216.1| putative bacteriophage-related lipoprotein [Burkholderia thailandensis MSMB43] Length = 420 Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 16/188 (8%) Query: 234 FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G+ GD S RF+ + + AL + + ++ P + +SG+ G Sbjct: 233 LSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNADSRFKVVSSPHVRIVSGEHVRLNVG 292 Query: 291 GQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Q ++ SS T S+T D G++ PTV+ I L+++ E+S+ V Sbjct: 293 QQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMR-DVIELKVREEISDFVATKTG 351 Query: 346 GDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 D P+ R+ T L G +VL GL++D + G L + F + Sbjct: 352 VDTSPTKNTRQLQTVTRLRDGELVVLGGLIQDRDATARSGYSWLP------SFFDGRSSS 405 Query: 405 REETEIFI 412 ++ TE+ + Sbjct: 406 KQRTEVLL 413 >gi|188578246|ref|YP_001915175.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522698|gb|ACD60643.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 655 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 7/174 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTT 309 F+ + L A+++ ++ P + + + G + Y T+S S +V Sbjct: 476 FNLDIELSAMQQEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQF 535 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGG 366 + + L TPT+ + R+ L + + E ++ G +P R+ +T V + G Sbjct: 536 KEVLLELKVTPTITNDNRVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGE 595 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ G+ + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 596 TVVIGGVYEFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 649 >gi|86157114|ref|YP_463899.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773625|gb|ABC80462.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 897 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 11/110 (10%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L P + G I L I+ + E P +G P+ R T + TIV+ Sbjct: 656 LKIKPQINEGGNIRLTIEEQTEEIAEKDPQLG------PTTAKRSVKTQIVARDQSTIVI 709 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GL++D + IP L +PILG LFR++ +++ + + TP++++ Sbjct: 710 GGLIQDRAIRSVSKIPFLGSLPILGWLFRDTTTTKQKVNLLLFLTPYIIR 759 >gi|78779577|ref|YP_397689.1| Type II secretory pathway component PulD-like [Prochlorococcus marinus str. MIT 9312] gi|78713076|gb|ABB50253.1| Type II secretory pathway component PulD-like protein [Prochlorococcus marinus str. MIT 9312] Length = 556 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 3/78 (3%) Query: 344 NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNS 401 N G++ R+ DT V + +G T+VL G+++D DI+ L + P+L +PI+G LFR++ Sbjct: 452 NCGEVNLLNTRRLDTGAVRIKNGETLVLTGVIQDSDIETLVK-FPILGDLPIMGPLFRST 510 Query: 402 RFNREETEIFIAATPFLV 419 + E+ + TP ++ Sbjct: 511 SKEVGKRELIVLVTPRII 528 >gi|84622715|ref|YP_450087.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366655|dbj|BAE67813.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 649 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAG 372 L TPT+ + R+ L + + E ++ G +P R+ +T V + G T+V+ G Sbjct: 536 LKVTPTITNDNRVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGG 595 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 596 VYEFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 643 >gi|257467448|ref|ZP_05631759.1| general secretion pathway protein D [Fusobacterium gonidiaformans ATCC 25563] Length = 435 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 53/249 (21%), Positives = 100/249 (40%), Gaps = 20/249 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 K+M ++I G+ QV + I ++ +D+ ++GF S +K A G + V Sbjct: 180 KLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEESVGNS 238 Query: 243 GDF--SVKGVLDRFSFET-----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G S ++ +FS T L LE ++ + P++ G F + + Sbjct: 239 GPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITEEVIV 298 Query: 296 KTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPS 350 S + + G++L P + + L I E+S+ N + Sbjct: 299 GEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNQKKDWN 358 Query: 351 YRV-------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + R T + + + TI++ GL + + + +P LS IP LG LF++ Sbjct: 359 FNAQGGSKMGRSLSTRIHVKNKETILIGGLSRSTHRNTENRVPFLSDIPGLGYLFKSESK 418 Query: 404 NREETEIFI 412 ET+++I Sbjct: 419 KDAETDMYI 427 >gi|58580784|ref|YP_199800.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425378|gb|AAW74415.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 673 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 7/174 (4%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTT 309 F+ + L A+++ ++ P + + + G + Y T+S S +V Sbjct: 494 FNLDIELSAMQQEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQF 553 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGG 366 + + L TPT+ + R+ L + + E ++ G +P R+ +T V + G Sbjct: 554 KEVLLELKVTPTITNDNRVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGE 613 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ G+ + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 614 TVVIGGVYEFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 667 >gi|17549095|ref|NP_522435.1| Hrp conserved HRCC transmembrane protein [Ralstonia solanacearum GMI1000] gi|2833448|sp|Q52498|HRPA_RALSO RecName: Full=Hypersensitivity response secretion protein hrpA; Flags: Precursor gi|6066715|emb|CAB58261.1| HrpA [Ralstonia solanacearum] gi|17431346|emb|CAD18025.1| hrp conserved hrcc transmembrane protein [Ralstonia solanacearum GMI1000] gi|1097294|prf||2113360W hrpA gene Length = 568 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + AL++ R A P + + A + Q+ Y V+ A + GV L Sbjct: 407 ISALQQTDQARITANPKVATLDNTEAVMDNR-QNFYVPVAGYQSA-DLYAISAGVSLRVL 464 Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ G RI + + E + + G++P + DT + G ++++AG + Sbjct: 465 PMVVMDGGTVRIRMNVHIEDGQ-ITSQQVGNLPITSQSEIDTQALINEGDSLLIAGYSVE 523 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +P LSKIP++GALFR + + + TP ++ P Sbjct: 524 QQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTPRVITP 568 >gi|304311658|ref|YP_003811256.1| Type III secretion pathway protein [gamma proteobacterium HdN1] gi|301797391|emb|CBL45611.1| Type III secretion pathway protein [gamma proteobacterium HdN1] Length = 598 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 27/244 (11%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--FVSEGGDFSVKGVL-- 251 + ++ TI +V D L++ G G S+G + + + K F+ ++ G+ Sbjct: 340 IEIEATIIDVNTDKLREQGVDW---GWSNGRTSAMTGEVDAKNNFLEVLAGDAISGLAQN 396 Query: 252 ----------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 +R F L+ LER ++ + P + ++ A S + +Y V Sbjct: 397 AGMQAGTIIGNRNRFVARLNLLEREGVVKVASRPKVVTLNDLEAVLESS-RSVYVPVQ-- 453 Query: 302 TGATSVTTHDY--GVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 GA V G VL TP V++ G +R+ + VI ++ + R A + Sbjct: 454 -GAYDVDLFKVFSGTVLRVTPHVINDVGTKKIRLIISAEDGVIDEHSTNNAPSVTRNAVS 512 Query: 359 TVELPSGGTIVLAGLLK--DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + G T +L G L + I Q+++ +PLL IP+LGALFR+ + +E TP Sbjct: 513 TQAVIEGETSLLLGGLSRTESITQVRK-VPLLGSIPLLGALFRSEAKVVQNSERLFLITP 571 Query: 417 FLVK 420 L++ Sbjct: 572 RLLE 575 >gi|114778365|ref|ZP_01453212.1| probable pilQ; fimbrial type-4 assembly signal peptide protein [Mariprofundus ferrooxydans PV-1] gi|114551328|gb|EAU53885.1| probable pilQ; fimbrial type-4 assembly signal peptide protein [Mariprofundus ferrooxydans PV-1] Length = 793 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 44/208 (21%), Positives = 85/208 (40%), Gaps = 4/208 (1%) Query: 214 GFQHSITGSSSGPSKSF-AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 G+ H++TG++S P +++ + + + L A E I+ + Sbjct: 581 GYTHTVTGAASAPQNVVDLGAAVKAGAGGAIGYTLGTLNNALNLNLELSAAEAEGQIKVV 640 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTG-ATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + P + + Q A Q ++ ++ST S + L TP + + RI ++ Sbjct: 641 SSPRVFTSNLQEALIEQDQQIPFQVTTASTPPVVSYQLKSAKLTLKVTPQITADKRIIMQ 700 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + PV N P+ ++ T + + +G T+VL G+ G+P L I Sbjct: 701 LVVNKDTPV--ANTVGPPTIDKKQIMTKLLVKNGETMVLGGIYTQTTSDQVNGVPGLQNI 758 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P +G F+ + R E+ I TP ++ Sbjct: 759 PFIGNFFKRKQKVRNRNELLIFITPTII 786 >gi|115358977|ref|YP_776115.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia ambifaria AMMD] gi|115284265|gb|ABI89781.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria AMMD] Length = 681 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 50/101 (49%) Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +P + + I + V G ++P + R T + G ++++AG D+++ K Sbjct: 504 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKS 563 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G+P LS IP++G LF+ + + E F TP +V AM Sbjct: 564 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTAAM 604 >gi|313110403|ref|ZP_07796289.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa 39016] gi|310882791|gb|EFQ41385.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa 39016] Length = 604 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%) Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 YG +L TP V++ G I L + E S+ +P+ DT + G + Sbjct: 397 YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQS 456 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +++ G+ +D++ Q + +P L IP LGALFR + Sbjct: 457 LLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTT 490 >gi|15596913|ref|NP_250407.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa PAO1] gi|9947691|gb|AAG05105.1|AE004598_4 Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa PAO1] Length = 600 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%) Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 YG +L TP V++ G I L + E S+ +P+ DT + G + Sbjct: 393 YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQS 452 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +++ G+ +D++ Q + +P L IP LGALFR + Sbjct: 453 LLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTT 486 >gi|34498052|ref|NP_902267.1| type III secretion system EscC protein [Chromobacterium violaceum ATCC 12472] gi|34103907|gb|AAQ60267.1| type III secretion system EscC protein [Chromobacterium violaceum ATCC 12472] Length = 495 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 41/241 (17%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF------AADFGGKFVSEGGDFSVKG 249 + + V I +V L +G S + S G SF +D +S G F VK Sbjct: 272 IEVSVMIIDVNSQDLSALGIDWSASASIGGNGISFNSAGQQGSDNFSTVISNTGGFMVK- 330 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVT 308 L+AL++ + L+ P++ + A K ++ S++ Sbjct: 331 ----------LNALQQKAKAQILSRPSVVTLDNTQAVLDRNITFYTKLLAEKVAKLESIS 380 Query: 309 THDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGD------MPSYRVRKAD 357 T G +L TP ++ G + L IQ G AG +P + Sbjct: 381 T---GSLLRVTPRLVDEGGQRNVMLTLVIQD-------GRQAGTVSQHEPLPQTLNAEVS 430 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIF-IAAT 415 T L +G +++L G ++D+ + + IPLL IP++G LFR+++ N R +F I A Sbjct: 431 TQTLLKAGQSLLLGGFVQDEHSEGESKIPLLGDIPLIGKLFRSTQKNSRSTVRLFLIKAE 490 Query: 416 P 416 P Sbjct: 491 P 491 >gi|116049666|ref|YP_791529.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa UCBPP-PA14] gi|115584887|gb|ABJ10902.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa UCBPP-PA14] Length = 600 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%) Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 YG +L TP V++ G I L + E S+ +P+ DT + G + Sbjct: 393 YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQS 452 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +++ G+ +D++ Q + +P L IP LGALFR + Sbjct: 453 LLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTT 486 >gi|304415496|ref|ZP_07396135.1| type III outer membrane secretin precursor [Candidatus Regiella insecticola LSR1] gi|304282655|gb|EFL91179.1| type III outer membrane secretin precursor [Candidatus Regiella insecticola LSR1] Length = 493 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 16/213 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-VKGVLDRF 254 + + VTI +V + Q+G + + S +G SF + G FS V G D F Sbjct: 268 IEISVTIIDVDAGNINQLGIDWTSSTSLAGNKVSFRS---GLIPGSNDSFSSVIGDTDNF 324 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 L AL++ + R L+ P++ ++ A K T G Sbjct: 325 MVR--LKALQQNSRARVLSRPSVVTLNNIPAVLDKNITFYTKLQGDKVAKLESITS--GS 380 Query: 315 VLHFTPTVLSP-GR----IGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368 +L TP +++ GR + L I+ V + NA + +P + + T L G ++ Sbjct: 381 LLRVTPRMINDNGRHEVLLNLNIKDGVQKS--SNNATEPLPQVQDSQISTQATLKIGQSL 438 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +L G ++D + ++ +P L IP++G LFR++ Sbjct: 439 LLGGFIQDRQSEAEKKVPFLGDIPVIGELFRST 471 >gi|53720957|ref|YP_109943.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei K96243] gi|52211371|emb|CAH37360.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei K96243] Length = 458 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 16/188 (8%) Query: 234 FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G+ GD S RF+ + + AL + + ++ P + +SG+ G Sbjct: 271 LSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVG 330 Query: 291 GQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Q ++ SS T S+T D G++ PTV+ I L+++ E+S+ V Sbjct: 331 QQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMR-DVIELKVREEISDFVATKTG 389 Query: 346 GDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 D P+ R+ T L G +VL GL++D + G L + F + Sbjct: 390 VDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDATARSGYSWLP------SFFDGRSSS 443 Query: 405 REETEIFI 412 ++ TE+ + Sbjct: 444 KQRTEVLL 451 >gi|167906931|ref|ZP_02494136.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei NCTC 13177] Length = 588 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 8/166 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++AL+ + ++ A P + + A + + K +S SV+T GV L Sbjct: 425 VNALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P ++ G RI + + + + G ++P + +T + G ++++AG Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P LSKIP+LGALFR ++ E +P ++ P Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586 >gi|81301259|ref|YP_401467.1| general secretion pathway protein D [Synechococcus elongatus PCC 7942] gi|81170140|gb|ABB58480.1| general secretion pathway protein D [Synechococcus elongatus PCC 7942] Length = 771 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 35/50 (70%) Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T++L+G+++D+ ++ IPLL +P++G+LFR S +R+ E+ + TP Sbjct: 684 TLILSGIIQDEERERVAKIPLLGDLPLIGSLFRTSYTDRQRREVVVVITP 733 >gi|134283528|ref|ZP_01770228.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei 305] gi|134245277|gb|EBA45371.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei 305] Length = 447 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 16/188 (8%) Query: 234 FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G+ GD S RF+ + + AL + + ++ P + +SG+ G Sbjct: 260 LSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVG 319 Query: 291 GQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Q ++ SS T S+T D G++ PTV+ I L+++ E+S+ V Sbjct: 320 QQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMR-DVIELKVREEISDFVATKTG 378 Query: 346 GDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 D P+ R+ T L G +VL GL++D + G L + F + Sbjct: 379 VDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDATARSGYSWLP------SFFDGRSSS 432 Query: 405 REETEIFI 412 ++ TE+ + Sbjct: 433 KQRTEVLL 440 >gi|56751665|ref|YP_172366.1| type IV pilus assembly protein PilQ [Synechococcus elongatus PCC 6301] gi|56686624|dbj|BAD79846.1| type IV pilus assembly protein PilQ [Synechococcus elongatus PCC 6301] Length = 725 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 35/50 (70%) Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T++L+G+++D+ ++ IPLL +P++G+LFR S +R+ E+ + TP Sbjct: 638 TLILSGIIQDEERERVAKIPLLGDLPLIGSLFRTSYTDRQRREVVVVITP 687 >gi|107101148|ref|ZP_01365066.1| hypothetical protein PaerPA_01002180 [Pseudomonas aeruginosa PACS2] gi|254234815|ref|ZP_04928138.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa C3719] gi|296389899|ref|ZP_06879374.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa PAb1] gi|1781385|gb|AAC44774.1| PscC [Pseudomonas aeruginosa] gi|126166746|gb|EAZ52257.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa C3719] Length = 600 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%) Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 YG +L TP V++ G I L + E S+ +P+ DT + G + Sbjct: 393 YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQS 452 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +++ G+ +D++ Q + +P L IP LGALFR + Sbjct: 453 LLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTT 486 >gi|110639568|ref|YP_679778.1| type II general secretion pathway (GSP) D protein [Cytophaga hutchinsonii ATCC 33406] gi|110282249|gb|ABG60435.1| type II general secretion pathway (GSP) D protein [Cytophaga hutchinsonii ATCC 33406] Length = 656 Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 14/155 (9%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 SF L ALE + + P L+ ++G A+ S GQ +Y V + S+TT+ Sbjct: 483 SFYMTLSALETNNNVEIKSMPKLSTLNGHDANM-SIGQTVYYEVQTQNTLGSLTTNTITT 541 Query: 315 V----------LHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELP 363 V L P V ++ L I EV++ NA P+ + + + + Sbjct: 542 VQYQSVQANQTLSIKPLVSGDDQVTLTI--EVNQTSFAKSNAAGPPNTTTSQFKSIIRVR 599 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + IVL GL K EG P+LS+IP++ LF Sbjct: 600 NEEMIVLGGLEKISKSIDTEGTPILSRIPVIKLLF 634 >gi|254240060|ref|ZP_04933382.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa 2192] gi|126193438|gb|EAZ57501.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa 2192] Length = 600 Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%) Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 YG +L TP V++ G I L + E S+ +P+ DT + G + Sbjct: 393 YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQS 452 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +++ G+ +D++ Q + +P L IP LGALFR + Sbjct: 453 LLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTT 486 >gi|218892331|ref|YP_002441198.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa LESB58] gi|218772557|emb|CAW28340.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa LESB58] Length = 600 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%) Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 YG +L TP V++ G I L + E S+ +P+ DT + G + Sbjct: 393 YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQS 452 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +++ G+ +D++ Q + +P L IP LGALFR + Sbjct: 453 LLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTT 486 >gi|254264333|ref|ZP_04955198.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] gi|254215335|gb|EET04720.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] Length = 588 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 30/252 (11%) Query: 196 VTLKVTIAEVRRDILKQIGFQ---HSITGS-SSGPSKSFAADFGGKFVSE-------GGD 244 + ++ I E+ D+L++IG H+ G +G + D+ G ++ G+ Sbjct: 339 IEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQINPFFGTTTLAGN 398 Query: 245 FSVKGVLDRFSFETVL-----HALERATAIRTLAE-----PTLTAISGQSASFTSGGQHL 294 V S V+ H + R +A+++ ++ L A S + Sbjct: 399 AVVNAAPAGVSVTAVVGDAARHLMARVSALQSTSKVKIDASPLVATLDNSEAVMDNTTRF 458 Query: 295 YKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMP 349 + VS A SV+T GV L P ++ G RI + + + + G ++P Sbjct: 459 FVKVSGYASAELYSVST---GVSLRVLPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLP 514 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + +T + G ++++AG D G+P LSKIP+LGALFR ++ E Sbjct: 515 VITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALFRYHSDSQNHME 574 Query: 410 IFIAATPFLVKP 421 +P ++ P Sbjct: 575 RVFLLSPRIIDP 586 >gi|159028225|emb|CAO88035.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 518 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 40/68 (58%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G +++L+G++++ Q + +P+L IPILGALFR+ +E+ I TP ++ Sbjct: 426 IRLRDGQSLILSGIIQERQQSSETKVPILGDIPILGALFRSRTNQNSRSEVIILLTPKII 485 Query: 420 KPVAMRDL 427 + A L Sbjct: 486 EDSATSTL 493 >gi|299069241|emb|CBJ40501.1| Type III secretion protein [Ralstonia solanacearum CMR15] Length = 590 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + AL++ R A P + + A + Q+ Y V+ A + GV L Sbjct: 429 ISALQQTDQARITANPKVATLDNTEAVMDNR-QNFYVPVAGYQSA-DLYAISAGVSLRVL 486 Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ G RI + + E + + G++P + DT + G ++++AG + Sbjct: 487 PMVVMDGGTVRIRMNVHIEDGQ-ITSQQVGNLPITSQSEIDTQALINEGDSLLIAGYSVE 545 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +P LSKIP++GALFR + + + TP ++ P Sbjct: 546 QQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTPRVITP 590 >gi|76817445|ref|YP_335577.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1710b] gi|76581918|gb|ABA51392.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710b] Length = 630 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 30/252 (11%) Query: 196 VTLKVTIAEVRRDILKQIGFQ---HSITGS-SSGPSKSFAADFGGKFVSE-------GGD 244 + ++ I E+ D+L++IG H+ G +G + D+ G ++ G+ Sbjct: 381 IEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQINPFFGTTTLAGN 440 Query: 245 FSVKGVLDRFSFETVL-----HALERATAIRTLAE-----PTLTAISGQSASFTSGGQHL 294 V S V+ H + R +A+++ ++ L A S + Sbjct: 441 AVVNAAPAGVSVTAVVGDAARHLMARVSALQSTSKVKIDASPLVATLDNSEAVMDNTTRF 500 Query: 295 YKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMP 349 + VS A SV+T GV L P ++ G RI + + + + G ++P Sbjct: 501 FVKVSGYASAELYSVST---GVSLRVLPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLP 556 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + +T + G ++++AG D G+P LSKIP+LGALFR ++ E Sbjct: 557 VITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALFRYHSDSQNHME 616 Query: 410 IFIAATPFLVKP 421 +P ++ P Sbjct: 617 RVFLLSPRIIDP 628 >gi|296162480|ref|ZP_06845271.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. Ch1-1] gi|295887293|gb|EFG67120.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. Ch1-1] Length = 709 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 +HALE A R L+ P + ++ A TS +Y V+ + + D G+ L T Sbjct: 427 IHALEDAGQARVLSSPQVLTLNNMEAVLTSH-SSVYVRVAGNQD-VDLYNIDTGLTLKVT 484 Query: 320 PTVLS---PGR-IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P++ S P R I L IQ + ++ +P T + G ++++ G Sbjct: 485 PSIESAAEPRRNIRLNIQIDDGAFNTSMSVDGIPKVDNHSIVTQAIVRDGESLLVGGYQY 544 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P+L +P +GALFR+++ RE E I TP L + Sbjct: 545 ERSESTTSKVPVLGDVPYVGALFRDTQTTRERLERLILITPRLKR 589 >gi|170699432|ref|ZP_02890477.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] gi|170135688|gb|EDT03971.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] Length = 680 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 50/101 (49%) Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +P + + I + V G ++P + R T + G ++++AG D+++ K Sbjct: 504 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKS 563 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G+P LS IP++G LF+ + + E F TP +V AM Sbjct: 564 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTAAM 604 >gi|34556961|ref|NP_906776.1| putative type II secretion system D [Wolinella succinogenes DSM 1740] gi|34482676|emb|CAE09676.1| PUTATIVE TYPE II SECRETION SYSTEM D [Wolinella succinogenes] Length = 731 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 7/114 (6%) Query: 313 GVVLHFTPTVLSPGRIGLRI-----QTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGG 366 GV+L TP+V + I L+I QT+ ++ A + P + + + V + G Sbjct: 586 GVLLDITPSVFND-EIMLKINPSITQTKSTDVENASTALETPPNLSTNQLSSLVRIKDGE 644 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IVL GL+ Q+ + +PLL +P+LG LF + E+ I TP ++K Sbjct: 645 KIVLGGLISKSNQKKENKVPLLGDVPVLGYLFSYNADVESTDEMVIVITPHIIK 698 >gi|218248885|ref|YP_002374256.1| type II and III secretion system protein [Cyanothece sp. PCC 8801] gi|218169363|gb|ACK68100.1| type II and III secretion system protein [Cyanothece sp. PCC 8801] Length = 743 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + L G T++L+G++ + Q + +P+L IP+LGALFR+ + +E+ + TP Sbjct: 653 IRLRDGQTLILSGIISETDQTITNKVPILGDIPLLGALFRSQTDTKNRSEVIVLLTP 709 >gi|283779820|ref|YP_003370575.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283438273|gb|ADB16715.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 1305 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 35/58 (60%) Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P GGT++L G+ + + + G+PLLSK+P + LF+N RE + + TP ++ Sbjct: 1233 VPDGGTVLLGGIKRLREGRNERGVPLLSKVPYVSRLFKNVGIGREAQSLMMMVTPRII 1290 >gi|322435311|ref|YP_004217523.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] gi|321163038|gb|ADW68743.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] Length = 819 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 12/173 (6%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSV------TT 309 L+AL R L P + A GQ A+ G + T S STG S+ T Sbjct: 413 LNALLTDGDTRILQNPRIRATDGQRATLKIGSKIPIATGSYNAGVSTGVASIGVQTQFTY 472 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367 D GV + TPTV + ++++ EVS + ++ P R ++ +++ G Sbjct: 473 IDVGVNIDITPTVHYDREVSMKMKIEVSSQSNTVVISGVSEPIISQRISEQVIQVQDGEP 532 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +LAG+L + G P L ++P F ++ E+ P +V+ Sbjct: 533 SILAGILTHQDSKTVSGTPFLGELPFFKYFFSTQSKETQQDELVFLIIPHVVR 585 >gi|257061946|ref|YP_003139834.1| type II and III secretion system protein [Cyanothece sp. PCC 8802] gi|256592112|gb|ACV02999.1| type II and III secretion system protein [Cyanothece sp. PCC 8802] Length = 899 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + L G T++L+G++ + Q + +P+L IP+LGALFR+ + +E+ + TP Sbjct: 809 IRLRDGQTLILSGIISETDQTITNKVPILGDIPLLGALFRSQTDTKNRSEVIVLLTP 865 >gi|320184380|gb|EFW59192.1| General secretion pathway protein D [Shigella flexneri CDC 796-83] Length = 164 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%) Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L TP + + + I+ EVS+ V G + D+ + RK TTV G IVL GL+ Sbjct: 1 MLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIVLGGLM 58 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 D + +PLL IP++G LF+++ +E+ + + P ++ Sbjct: 59 DDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTIL 103 >gi|149926070|ref|ZP_01914333.1| putative type III secretion protein [Limnobacter sp. MED105] gi|149825358|gb|EDM84569.1| putative type III secretion protein [Limnobacter sp. MED105] Length = 530 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 95/236 (40%), Gaps = 20/236 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--KGVLDR 253 + ++ + EV + L ++G + + S FA DF G V + ++D Sbjct: 268 IEVEAMMVEVDQKGLNELGLEFGLL------SDRFAYDFPGSGVGRPSLIAAGATSIVDP 321 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F L AL + LA PT+ SA + Q LY VS A V G Sbjct: 322 MRFMARLKALSADENAKVLARPTIVTQDNVSA-YIDLSQTLYIQVSGERVA-DVIPITAG 379 Query: 314 VVLHFTPTVL---SPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 +L TP V+ RI LRI+ + ++E G+N MP + T + Sbjct: 380 SLLQVTPRVVIDEQEERIFLRIEIQDGSLTENTQGIN---MPRVQNTSLSTQAVIQREKA 436 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPV 422 I++ G ++ + +PLL IP +G F ++ + TP L+ +P+ Sbjct: 437 ILIGGYNRESTEVNDYKVPLLGDIPYIGKAFTSTEKRTQTVARLFLITPRLIDRPI 492 >gi|308095376|ref|ZP_05905407.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus Peru-466] gi|308086743|gb|EFO36438.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus Peru-466] Length = 525 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 3/130 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL++ + ++ P L + + A G + Y SSS+GATSVT + L T Sbjct: 397 LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVT 455 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P V+ G+ + ++ T V + +G T+VL G+ + Sbjct: 456 PQITPDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHS 515 Query: 378 IQQLKEGIPL 387 I + +PL Sbjct: 516 ITNSVDKVPL 525 >gi|238796139|ref|ZP_04639650.1| General secretion pathway protein D [Yersinia mollaretii ATCC 43969] gi|238720084|gb|EEQ11889.1| General secretion pathway protein D [Yersinia mollaretii ATCC 43969] Length = 625 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 13/148 (8%) Query: 267 TAIRT------LAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSVTTHD---YGVVL 316 TA+RT LA P++ + A F+ G + + ++TG T D G+ L Sbjct: 399 TALRTNNQNDILATPSIVTLDNMEAEFSVGQEVPVLSGSQTTTGDNIFRTVDRKSVGIKL 458 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDM-PSYRVRKADTTVELPSGGTIVLAGL 373 P + + L I+ EVS GD+ ++ R V + S +V+ GL Sbjct: 459 KVKPQINKGDSVLLEIEQEVSSVAAKAPSGTGDLGATFNSRTVKNAVMVGSNNIVVVGGL 518 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNS 401 L Q + +PLL IP +G LFR++ Sbjct: 519 LDSTSQDITSKVPLLGDIPGVGFLFRST 546 >gi|166713254|ref|ZP_02244461.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 648 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAG 372 L TPT+ + R+ L + + E ++ G +P R+ +T V + G T+V+ G Sbjct: 535 LKVTPTITNDNRVFLSMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGG 594 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 595 VYEFTDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642 >gi|330501497|ref|YP_004378366.1| type 4 fimbrial biogenesis outer membrane protein PilQ [Pseudomonas mendocina NK-01] gi|328915783|gb|AEB56614.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas mendocina NK-01] Length = 704 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 78/167 (46%), Gaps = 3/167 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E++ + +++P + ++A G + Y+ SSS ATS + + + L T Sbjct: 535 LSAMEKSGSGEVVSQPKVVTSDKETAKILKGTEVPYQESSSSG-ATSTSFKEAALSLEVT 593 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ + ++ P V + G +P+ + + V + G TIV+ G+ + Sbjct: 594 PQITPDNRVLMEVKVTKDAPDFSVTSSTGGIPAINKNEVNAKVLVADGETIVIGGVYSNT 653 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + + +P L +P +G +FR + E+ + TP ++ A+ Sbjct: 654 QSKSVDKVPFLGDLPFVGRVFRRDLVQDRKAELLVFLTPRIMNNQAI 700 >gi|56461571|ref|YP_156852.1| Type II secretory pathway, component PulJ [Idiomarina loihiensis L2TR] gi|56180581|gb|AAV83303.1| Type II secretory pathway, component PulJ [Idiomarina loihiensis L2TR] Length = 427 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 14/236 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-----SEGGDFSVKG 249 QV ++ + V+ ++ K++G + ++ + + G V + G FS Sbjct: 192 QVLIEARMVTVKANVSKELGIRWGVSEYGLAIPEDAGSFVKGMQVDLPTAAPAGTFSAN- 250 Query: 250 VLDRFSFETVLH----ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 L R S + +L ALE+ + P + S Q ++ G + +++ GAT Sbjct: 251 -LARLSDDILLDLELTALEQENKAEIITSPKIFT-SNQQPAYIEQGTEIPYVETAAHGAT 308 Query: 306 SVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 +V + L TP + + L I + G + ++ T V Sbjct: 309 AVQFKKAVMGLSVTPQITPNNHVLMELTITQNTRGDTVATPTGPAVAIDTQEMSTRVLAK 368 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G TIVL G+ ++ +P+L +P++G LF + + E+ E+ I TP ++ Sbjct: 369 NGETIVLGGIFQEHNLNDDSRVPILGSLPLIGKLFSHQQQRDEKRELMIFVTPTIL 424 >gi|254491741|ref|ZP_05104920.1| Bacterial type II and III secretion system protein [Methylophaga thiooxidans DMS010] gi|224463219|gb|EEF79489.1| Bacterial type II and III secretion system protein [Methylophaga thiooxydans DMS010] Length = 743 Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 28/167 (16%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--------------TVSSSTGAT 305 L LE +R L+ P + A + + A G + L + S Sbjct: 380 LEFLEENNRVRVLSNPMIVASNHRQAELFIGAETLLTDGFEFFPAIIDNGVVIQPSYVQA 439 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSYRVRKAD 357 V D G+ L TP + + L I+ E S P+ N G + + V D Sbjct: 440 IVNREDIGITLRITPRINGDETVELLIEQENSTVNPGGGSVPITDGN-GTVQNLPVDTVD 498 Query: 358 T-----TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 T TV G T+ + GL++ + + +P+LS+IP+LG +FR Sbjct: 499 TARLTGTVMAKDGLTVAVGGLIRTSKNKNERKVPVLSEIPVLGRIFR 545 >gi|260772068|ref|ZP_05880985.1| type IV pilus biogenesis protein PilQ [Vibrio metschnikovii CIP 69.14] gi|260612935|gb|EEX38137.1| type IV pilus biogenesis protein PilQ [Vibrio metschnikovii CIP 69.14] Length = 573 Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 3/162 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A++R + ++ P L + + A G + Y SSS+GAT+V + L T Sbjct: 411 LSAMQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVAFKKAVLSLQVT 469 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P ++ G+ + ++ T V + +G T+VL G+ + Sbjct: 470 PQITPDNRLVLDLSVTQDRPGDIVKTGTGEAVAIHTQRIGTQVLVNNGETVVLGGIFQHS 529 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR S ++E+ I TP +V Sbjct: 530 ITNTVDKVPLLGDLPLLGALFRRSYQQMGKSELLIFVTPKVV 571 >gi|166714017|ref|ZP_02245224.1| HrcC [Xanthomonas oryzae pv. oryzicola BLS256] gi|61219456|gb|AAX40633.1| HrcC [Xanthomonas oryzae pv. oryzicola] Length = 607 Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 98/244 (40%), Gaps = 23/244 (9%) Query: 196 VTLKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 + + TI E+R ++ +G QH+ TG G F G ++G V Sbjct: 369 LQIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPV 427 Query: 248 KGVL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G L R+ T + ALE + ++ P + + A Q + S Sbjct: 428 GGTLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--S 484 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKAD 357 + + GV L P+V+ PG +R+ + + +G N D +P + Sbjct: 485 GYASADLYNLSAGVSLRVLPSVV-PGSPNSQMRLDVRIEDGQLGSNTVDGIPVITSSEIK 543 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + G ++++AG D + +P LSKIP+LG LF++ + N + TP Sbjct: 544 TQAFVNEGQSLLIAGYAYDADETNLNAVPGLSKIPLLGNLFKHRQKNGSRMQRLFLLTPH 603 Query: 418 LVKP 421 +V P Sbjct: 604 VVSP 607 >gi|229515151|ref|ZP_04404611.1| hypothetical protein VCB_002808 [Vibrio cholerae TMA 21] gi|71480608|gb|AAZ32230.1| VcsC2 [Vibrio cholerae non-O1/non-O139] gi|229347856|gb|EEO12815.1| hypothetical protein VCB_002808 [Vibrio cholerae TMA 21] Length = 485 Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 8/157 (5%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 AL R++ E L A+ Q F +S T D L+ T Sbjct: 327 FQALYTNGIARSVYETNLLALENQQGQFGKKQTATLTLISDKEVKTEKIEADNS--LYVT 384 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKD 376 +L G++ RIQ V E + GD P + ++ V + G T++L G Sbjct: 385 GRLLPSGQVQARIQY-VEEALD--EEGDSNRPPRVSSQSLNSEVYIQPGQTVILGGFDNT 441 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 QQ + G+P+LS IP+LG LF+ + ++ + + +++ Sbjct: 442 VTQQQESGVPVLSSIPLLGELFKYTSESKHKYKRYVS 478 >gi|89902101|ref|YP_524572.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89346838|gb|ABD71041.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 614 Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust. Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 34/237 (14%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G Q ++ G S+G + AD + G F + D F+ VL LE ++ L+ Sbjct: 344 GVQSNLPGFSAG--SALLADGISLPAAGAGLFGLAFATD--GFQAVLGFLETQGDVQILS 399 Query: 274 EPTLTAISGQSASFTSGGQHLYKT---------------VSSSTGATSVTTHDYGVVLHF 318 P + ++ Q A G + + T + + + ++T G+ L Sbjct: 400 SPRIATLNNQKAVLKVGAEDFFVTNVSGGTTSSVTTGSTATLTMPSITLTPFFSGISLDV 459 Query: 319 TPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSY-------RVRKADTTVELPSGGTI 368 TP + +I L + T VSE ++ G +Y + + DT V + G + Sbjct: 460 TPQIDEGTKIMLHVHPSVTTVSERAKQIDLGSAGNYVLPLASSSMNETDTLVRIQDGNIV 519 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + GL++ + + G+P S +P+ LF N + E+ + L+KP +R Sbjct: 520 AIGGLMQIESNRKSSGLPGTSDVPLFSTLFGNHANTGRKKEVVV-----LIKPTIIR 571 >gi|163757621|ref|ZP_02164710.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica DFL-43] gi|162285123|gb|EDQ35405.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica DFL-43] Length = 136 Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I + ++ IL++ V V++ + ADV V PRT+ L GK+ G N++++ +G+ + Sbjct: 35 IRVFMDHARILKLDRTVSKVIIGNAAVADVTVSDPRTIVLTGKSYGTTNLVILDQEGEAI 94 Query: 110 LNLDILIERDIAHLEMTLRRF 130 ++ IL+ D A+ TLR F Sbjct: 95 VDERILVSVDEAN---TLRVF 112 >gi|152988863|ref|YP_001351096.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa PA7] gi|150964021|gb|ABR86046.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa PA7] Length = 714 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 9/204 (4%) Query: 219 ITGSSSGP------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 I G+ S P S S D G K + G + + D + L A+E+ + Sbjct: 502 IAGNCSFPTVGTNKSPSPFVDIGAKDATSG--IGIGFITDNIILDLQLSAMEKTGNGEII 559 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 ++P + ++A G + Y+ SSS ATS + + + L TP + RI + + Sbjct: 560 SQPKVVTSDKETAKILKGSEVPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEV 618 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + P +P + + + + G TIV+ G+ ++ + + +P L +P Sbjct: 619 KVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQTKAVDKVPFLGDLP 678 Query: 393 ILGALFRNSRFNREETEIFIAATP 416 LG LFR + E+ + P Sbjct: 679 YLGRLFRRDTVVDRKNELLVFLAP 702 >gi|218440223|ref|YP_002378552.1| type II and III secretion system protein [Cyanothece sp. PCC 7424] gi|218172951|gb|ACK71684.1| type II and III secretion system protein [Cyanothece sp. PCC 7424] Length = 734 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 7/70 (10%) Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T++L+G++ + Q +P+L IPILGALFR + + +E+ + TP ++ Sbjct: 648 GQTLILSGIISESEQTTVSKVPILGDIPILGALFRRTDNSGSRSEVIVLLTPKIID---- 703 Query: 425 RDLSRPDDHY 434 RPD + Sbjct: 704 ---DRPDSSW 710 >gi|167615580|ref|ZP_02384215.1| type III secretion system protein BsaO [Burkholderia thailandensis Bt4] Length = 351 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 26/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G G+ + P G F + GG+ + LD Sbjct: 94 QIELSLWIIDIRKSRLDQLGIDWQ--GALNAPG------IGVGFNNRGGNVTT---LDGT 142 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + T T YG Sbjct: 143 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGERTVQLDHVT--YGT 200 Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + ++ + + E S+ I ++ MP + +T +P Sbjct: 201 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEM 260 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ +P++G LFR +R E + + FL++P +R Sbjct: 261 SLLIGGNTRDDVTRRTFRIPGLASLPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 314 >gi|91782693|ref|YP_557899.1| putative type III secretion hypersensitivity response secretion protein, HrcC/HrpA1- like [Burkholderia xenovorans LB400] gi|91686647|gb|ABE29847.1| Putative type III secretion hypersensitivity response secretion protein, HrcC/HrpA1- like protein [Burkholderia xenovorans LB400] Length = 736 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 +HALE A R L+ P + ++ A TS +Y V+ + + D G+ L T Sbjct: 427 IHALEDAGQARVLSSPQVLTLNNMEAVLTSH-SSVYVRVAGNQD-VDLYNIDTGLTLKVT 484 Query: 320 PTVLS---PGR-IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P++ S P R I L IQ + ++ +P T + G ++++ G Sbjct: 485 PSIESAADPRRNIRLNIQIDDGAFNTSMSVDGIPKVDNHSIVTQAIVRDGESLLVGGYQY 544 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P+L +P LG LFR+++ RE E I TP L + Sbjct: 545 ERSESTTSKVPVLGDVPYLGVLFRDTQTTRERLERLILITPRLKR 589 >gi|145301440|ref|YP_001144279.1| AscC protein [Aeromonas salmonicida subsp. salmonicida A449] gi|66947980|emb|CAE83117.1| AscC protein [Aeromonas salmonicida subsp. salmonicida] gi|88698168|gb|ABD48952.1| AscC [Aeromonas salmonicida subsp. salmonicida A449] gi|142856322|gb|ABO92531.1| AscC protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 617 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 11/120 (9%) Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG +L TP V+ G + L I+ +P A +P+ DT + G Sbjct: 403 YGTMLRMTPRVIQMGDRPEISLSLHIEDGNQKPN-SAGADGIPTISRTVVDTIARVGHGQ 461 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G+ +D++ + +P L IP LGALFR+ ++T+ + F+++P + D Sbjct: 462 SLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRS-----KDTQTRRSVRLFIIEPRLIDD 516 >gi|300867368|ref|ZP_07112024.1| type II and III secretion system protein [Oscillatoria sp. PCC 6506] gi|300334619|emb|CBN57192.1| type II and III secretion system protein [Oscillatoria sp. PCC 6506] Length = 810 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 15/174 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310 F + L A + + L +PTL G++A Q + + +T T +T Sbjct: 605 FLSQLQAQIQTNNAKILTDPTLIVQEGETAGVNLTEQVITNITTQTTAGTGLTQQTVTAE 664 Query: 311 --DYGVVLHFTPTVLSP-GRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKADTTVEL 362 + G+ L+ T + G I +RI V + P +G N + R + + L Sbjct: 665 KGNAGLTLNVEVTRIDDNGFISMRINPTVRAIARTSP-LGNNLISLLQERSLSSGL-IRL 722 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 G T++++G++ D + IP+L +PI+GALFR++ + + E+ + TP Sbjct: 723 RDGQTLIVSGIINDTERVTASKIPILGDLPIIGALFRSTSKSNQRAEVIVLVTP 776 >gi|126456443|ref|YP_001075927.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1106a] gi|134282510|ref|ZP_01769214.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] gi|167742975|ref|ZP_02415749.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 14] gi|167849982|ref|ZP_02475490.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei B7210] gi|167898588|ref|ZP_02485989.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 7894] gi|167915290|ref|ZP_02502381.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 112] gi|167923124|ref|ZP_02510215.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei BCC215] gi|242313713|ref|ZP_04812730.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] gi|254186704|ref|ZP_04893220.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|254194157|ref|ZP_04900589.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei S13] gi|254301616|ref|ZP_04969060.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|126230211|gb|ABN93624.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106a] gi|134246067|gb|EBA46157.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] gi|157811506|gb|EDO88676.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|157934388|gb|EDO90058.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|169650908|gb|EDS83601.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei S13] gi|242136952|gb|EES23355.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] Length = 588 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + AL+ + ++ A P + + A + + K +S SV+T GV L Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P ++ G RI + + + + G ++P + +T + G ++++AG Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P LSKIP+LGALFR ++ E +P ++ P Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586 >gi|118579431|ref|YP_900681.1| type IV pilus secretin PilQ [Pelobacter propionicus DSM 2379] gi|118502141|gb|ABK98623.1| type IV pilus secretin PilQ [Pelobacter propionicus DSM 2379] Length = 864 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 14/200 (7%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVK-GVL-DRFSFETVLHALERATAIRTLAEPTLT 278 G ++ P S D S GG+ + G L + + L A A I+ ++ P + Sbjct: 668 GITTAPPTSGTGD------SAGGNMGISFGALGNGVQLDMRLSAAATAGLIKIISCPKVA 721 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEV 336 ++ + A G Q Y +++ +V T + + L TP + + G I + I + Sbjct: 722 TLNNKKAKIAQGQQIPY----TASDGDNVETKFVEAALSLEVTPHINANGTISMNIVAKN 777 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 V + P+ ++A T + L G T V+ G+ D G+P L IP +G Sbjct: 778 DSMGDAVGSSTAPAINTKEATTEMLLRDGETTVIGGIFVDTDNDSDAGVPFLMDIPAIGK 837 Query: 397 LFRNSRFNREETEIFIAATP 416 F+ + + +TE+ + TP Sbjct: 838 FFKTNSKTKTKTELLVFITP 857 >gi|145284361|gb|ABP51942.1| AscC [Aeromonas veronii bv. sobria] Length = 617 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 11/120 (9%) Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG +L TP V+ G + L I+ +P A +P+ DT + G Sbjct: 403 YGTMLRMTPRVIQMGDRPEISLSLHIEDGNQKPN-SAGADGIPTISRTVVDTIARVGHGQ 461 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G+ +D++ + +P L IP LGALFR+ ++T+ + F+++P + D Sbjct: 462 SLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRS-----KDTQTRRSVRLFIIEPRLIDD 516 >gi|126441183|ref|YP_001060902.1| Type II secretory pathway, component PulD [Burkholderia pseudomallei 668] gi|126220676|gb|ABN84182.1| type II secretory pathway, component PulD [Burkholderia pseudomallei 668] Length = 448 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 10/164 (6%) Query: 234 FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G+ GD S RF+ + + AL + + ++ P + +SG+ G Sbjct: 261 LSGQLRVSSGDTSSDASAVRFTGPGVDAAISALNADSRFKVVSAPHVRIVSGERVRLNVG 320 Query: 291 GQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Q ++ S G+T S+T D G++ PTV+ I L+++ E+S+ V Sbjct: 321 QQVPTQSSVSYQGSTGTPVQSITYQDAGLIFDVEPTVMR-EVIELKVREEISDFVATKTG 379 Query: 346 GDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 D P+ R+ T L G +VL GL++D + G L Sbjct: 380 VDTSPTKNTRQLQTVTRLKDGEVVVLGGLIQDRNATARSGYAWL 423 >gi|237507548|ref|ZP_04520263.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] gi|234999753|gb|EEP49177.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] Length = 588 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + AL+ + ++ A P + + A + + K +S SV+T GV L Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P ++ G RI + + + + G ++P + +T + G ++++AG Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P LSKIP+LGALFR ++ E +P ++ P Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586 >gi|53722417|ref|YP_111402.1| type III secretion system protein [Burkholderia pseudomallei K96243] gi|167820148|ref|ZP_02451828.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 91] gi|52212831|emb|CAH38865.1| putative type III secretion system protein [Burkholderia pseudomallei K96243] Length = 588 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + AL+ + ++ A P + + A + + K +S SV+T GV L Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P ++ G RI + + + + G ++P + +T + G ++++AG Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P LSKIP+LGALFR ++ E +P ++ P Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586 >gi|126445154|ref|YP_001062980.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 668] gi|126224645|gb|ABN88150.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 668] Length = 588 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + AL+ + ++ A P + + A + + K +S SV+T GV L Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P ++ G RI + + + + G ++P + +T + G ++++AG Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P LSKIP+LGALFR ++ E +P ++ P Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586 >gi|459551|gb|AAA16704.1| fimbrial assembly protein [Pseudomonas aeruginosa PAO1] Length = 727 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 11/208 (5%) Query: 220 TGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 TG+S PS D G K + G G + +LD + V +R R +++P Sbjct: 524 TGTSKSPSPFV--DLGAKDATSGIGIGFITDNIILD---LQPVGDGKDRQR--RVVSQPK 576 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + ++A G + Y+ SSS ATS + + + L TP + RI + ++ Sbjct: 577 VVTSDKETAKILKGSEVPYQEASSSG-ATSTSFKEAALSLEVTPQITPDNRIIVEVKVTK 635 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 P +P + + + + G TIV+ G+ ++ + E +P L ++P LG Sbjct: 636 DAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLGELPYLGR 695 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAM 424 LFR + E+ + TP ++ A+ Sbjct: 696 LFRRDTVTDRKNELLVFLTPRIMNNQAI 723 >gi|167840181|ref|ZP_02466865.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia thailandensis MSMB43] Length = 579 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 25/239 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++R+ L Q+G ++ G F GG + LD Sbjct: 321 QIELSLWIIDIRKSRLDQLGIDWQGALNAPGIGVGFNNRGGGNVTT----------LDGT 370 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + ++ P + A+F S K + A + YG Sbjct: 371 KFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIGER--AVQLDHVTYGT 428 Query: 315 VLHFTPTVL-SPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P + ++ + + E S+ I V+ MP + +T +P Sbjct: 429 LVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGQIVVDNNAMPLVNRTEINTVARVPREM 488 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +DD+ + IP L+ IP++G LFR +R E + + FL++P +R Sbjct: 489 SLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFR-GHSDRHEQVVRV----FLIQPKLLR 542 >gi|14719865|gb|AAK73229.1| SctC [Burkholderia pseudomallei] Length = 588 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + AL+ + ++ A P + + A + + K +S SV+T GV L Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P ++ G RI + + + + G ++P + +T + G ++++AG Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P LSKIP+LGALFR ++ E +P ++ P Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586 >gi|85060069|ref|YP_455771.1| type III secretion apparatus InvG [Sodalis glossinidius str. 'morsitans'] gi|45504769|gb|AAS66859.1| InvG [Sodalis glossinidius] gi|84780589|dbj|BAE75366.1| type III secretion apparatus InvG [Sodalis glossinidius str. 'morsitans'] Length = 546 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 13/109 (11%) Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EVS + D+P T +P G ++++ G +D+++ + +P L IP++ Sbjct: 424 EVSRRQSNPGSDDLPEVGRTHISTVARVPRGKSLLIGGYTRDELRGNRARLPGLGSIPLI 483 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 G LFR+ R +++ + + FL++P R++S P ++ DA AF Sbjct: 484 GGLFRH-RIDKQANMVRV----FLIQP---REISEP-----LQQDAAAF 519 >gi|167724007|ref|ZP_02407243.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei DM98] gi|254183789|ref|ZP_04890381.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] gi|184214322|gb|EDU11365.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] Length = 588 Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + AL+ + ++ A P + + A + + K +S SV+T GV L Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P ++ G RI + + + + G ++P + +T + G ++++AG Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P LSKIP+LGALFR ++ E +P ++ P Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586 >gi|254418127|ref|ZP_05031851.1| general secretion pathway protein D [Brevundimonas sp. BAL3] gi|196184304|gb|EDX79280.1| general secretion pathway protein D [Brevundimonas sp. BAL3] Length = 718 Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 12/174 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSG-------GQHLYKTVSSSTGATSVT 308 F +++A + L P++ + + A+F G GQ L +S T+ Sbjct: 471 FGFIINAAKTDKGSNLLQTPSIMTLDNEEATFLVGQEVPITTGQTLLD--GNSNPFTTTD 528 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGG 366 D GV L P + + G I L ++ EVS G+ G D+ + R+ TT+ + G Sbjct: 529 RKDIGVRLTVKPQINAGGSITLTLRQEVSAINGGLTRGATDLVLDK-RELQTTLVVDDGD 587 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 V GLL + + IP L +P +GALFR++ R T + + P +V+ Sbjct: 588 IAVAGGLLDQNDIISTDKIPGLGDLPGVGALFRSNSRQRGRTNLMVFLRPTIVR 641 >gi|327538876|gb|EGF25517.1| general secretion pathway protein D [Rhodopirellula baltica WH47] Length = 1261 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 69/285 (24%), Positives = 113/285 (39%), Gaps = 62/285 (21%) Query: 196 VTLKVTIAEVRRD----ILKQIGFQHSI---TGSSSG------PSKSFAADFGG------ 236 V +K IAEVR D I + G Q S+ G ++G P+ +FGG Sbjct: 765 VLIKTLIAEVRLDDGFEIGGEFGLQDSLLFDRGKATGAIATDNPASDPGFNFGGTNLPNS 824 Query: 237 ------KFVSEG--------------GDFSVKGVLDRFSFETV---LHALERATAIRTLA 273 S+G G + G + + E+V L L A ++ L+ Sbjct: 825 NSFGQESLASQGLTNFGATATQLTRVGGLNSGGFVFSAASESVNLFLRTLRVANRLQILS 884 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS---SSTGATS------VTTHDYGVVLHFTPTVLS 324 P + + + + GQ+ + +STG S + D G++L TP V + Sbjct: 885 RPEIMT-ADNTEGYVQVGQNFPRPTELTFTSTGGNSTQPIIGIEDVDIGIILRVTPRVGA 943 Query: 325 PGRIGLRI-------QTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLL 374 G I + I +V + + + GD +P+ A TV G T+V GL+ Sbjct: 944 DGMIFMAIDATRSAINNDVGQTIGSFDNGDPIFVPAIDTTTAQATVTAFDGQTVVFGGLI 1003 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + Q +P L+ IP+LG F+ + +E+ + TP LV Sbjct: 1004 QKYRQNRTSRVPYLADIPLLGTFFKYDSEIEQRSELLVVMTPILV 1048 >gi|327479223|gb|AEA82533.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri DSM 4166] Length = 706 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 1/157 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E+ +++P + ++A G + Y+ SSS ATS + + + L T Sbjct: 539 LSAMEKTGNGEIVSQPKVVTADKETAKILKGAEIPYQEASSSG-ATSTSFKEAALSLEVT 597 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + RI + ++ P +P + + V + G TIV+ G+ + Sbjct: 598 PQITPDNRIIMEVKVTKDAPDFANALNGVPPINKNEVNAKVLVTDGETIVIGGVFSNSQI 657 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 E +P L +P +G LFR +++E+ + TP Sbjct: 658 SSIEKVPFLGDVPFVGRLFRRDIVEDKKSELLVFLTP 694 >gi|91203965|emb|CAJ71618.1| hypothetical protein kustc0873 [Candidatus Kuenenia stuttgartiensis] Length = 844 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 13/118 (11%) Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------------MPSYRVRKADTTVE 361 V L TP+V + I + +SE V V GD +P V + TV Sbjct: 701 VYLEVTPSVFAIEEIESFTFSGLSEGV-SVGGGDGTTYIPPEQTIQLPKLNVSQVSVTVY 759 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P GT+++ GL + G+P+LSKIPI+ LF + R ++ + I P ++ Sbjct: 760 VPDKGTLMIGGLGSLSNKDETSGVPVLSKIPIIKRLFTRDQKTRNKSNLIILLKPTII 817 >gi|19705376|ref|NP_602871.1| general secretion pathway protein D [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713363|gb|AAL94170.1| General secretion pathway protein D [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 402 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360 G+++ P + I L I E+S+ + +N+G S +V R T V Sbjct: 283 GLIMKVKPIIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 342 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++I Sbjct: 343 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 394 >gi|113955379|ref|YP_731905.1| general secretion pathway protein D [Synechococcus sp. CC9311] gi|113882730|gb|ABI47688.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. CC9311] Length = 732 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 353 VRKADT-TVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 VR+ DT ++ + G T++L G++ D D QQ+++ P+L +P++G FR S +R + E+ Sbjct: 637 VRRLDTGSLRVRDGQTLILTGVISDRDAQQVRK-WPILGDLPLIGQFFRESTRDRAKREL 695 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 696 VVLVTPKII 704 >gi|327538217|gb|EGF24896.1| protein containing Type II and III secretion system domain [Rhodopirellula baltica WH47] Length = 109 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%) Query: 333 QTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + EVSE P + +N P R TTV + G TIV+ GL++ + IP Sbjct: 7 KAEVSEDVRNATPALSIN--QYPIINRRSVSTTVSVKDGKTIVIGGLVQRETVDRVNRIP 64 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 LS++P +G LF+ ++ + E+ I +P +V+ Sbjct: 65 GLSRLPGVGYLFQTTQRQTRDAEVVIFISPRIVR 98 >gi|240949528|ref|ZP_04753868.1| type II secretory pathway, component HofQ [Actinobacillus minor NM305] gi|240296101|gb|EER46762.1| type II secretory pathway, component HofQ [Actinobacillus minor NM305] Length = 443 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 4/165 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ ++ +A P L + + AS G + Y + V + + L T Sbjct: 261 LSALEQENSVEIIASPRLLTTNKKLASIKQGTEIPYAIYDRKSETYDVEFKEAVLGLQVT 320 Query: 320 PTVLSPGRIGLRI---QTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLK 375 P + +I + + Q + V+ + + S ++ +T V G TIVL G+ + Sbjct: 321 PHISKDNQILMDLVVTQNSQGQSVVSSTSDNAAVSIDKQELNTQVFAKHGETIVLGGIFQ 380 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P+L IP L LF + + E+ I TP++++ Sbjct: 381 HLKTKDSDRVPVLGSIPFLKHLFSYQKDQISKRELVIFVTPYIIQ 425 >gi|307149984|ref|YP_003885368.1| type II and III secretion system protein [Cyanothece sp. PCC 7822] gi|306980212|gb|ADN12093.1| type II and III secretion system protein [Cyanothece sp. PCC 7822] Length = 728 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 7/72 (9%) Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T++L+G++ + + +P+L IPILGALFR + N +E+ + TP ++ Sbjct: 642 GQTLILSGIISETERTTVTKVPILGDIPILGALFRRTDNNGNRSEVIVLLTPKIID---- 697 Query: 425 RDLSRPDDHYSV 436 RPD + + Sbjct: 698 ---DRPDATFGI 706 >gi|54124974|gb|AAV30242.1| YscC [Aeromonas hydrophila] Length = 614 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 9/108 (8%) Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365 YG +L TP V+ G + L I+ +P G++ +P+ DT + G Sbjct: 403 YGTMLRMTPRVIQLGDRPEVSLSLHIEDGSQKPNSSGLDG--IPTISRTVVDTIARVGHG 460 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIFI 412 ++++ G+ +D++ + +P L IP LGALFR+ R + +FI Sbjct: 461 QSLLIGGIYRDELSESLSKVPFLGDIPYLGALFRSKESQTRRQVRLFI 508 >gi|254508151|ref|ZP_05120276.1| fimbrial assembly protein [Vibrio parahaemolyticus 16] gi|219548873|gb|EED25873.1| fimbrial assembly protein [Vibrio parahaemolyticus 16] Length = 553 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 +R + ++ P L + + A G + Y SSS+GAT+VT + L TP + Sbjct: 395 QRESKAEVISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVTPQIT 453 Query: 324 SPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 R+ L + P V+ G+ + ++ T V + +G T+VL G+ + + Sbjct: 454 PDNRLVLDLNVTQDRPGDVVKTGTGEAVAINTQRIGTQVLVENGETVVLGGIFQHSVTDT 513 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL +P+LGALFR S ++E+ I TP +V Sbjct: 514 VDKVPLLGDLPLLGALFRRSYQQMGKSELLIFVTPKVV 551 >gi|254422445|ref|ZP_05036163.1| Bacterial type II and III secretion system protein [Synechococcus sp. PCC 7335] gi|196189934|gb|EDX84898.1| Bacterial type II and III secretion system protein [Synechococcus sp. PCC 7335] Length = 702 Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 23/178 (12%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L A +++ + + +PTL GQ+A+ Q + V++ T T + T + GV+ Sbjct: 504 FLAQLEASVQSSNAKIVTDPTLVIQEGQTAAV----QLTQEVVTNIT--TDIETTEVGVL 557 Query: 316 LHFT--------------PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT-- 359 T + G + L + +S P N G + + T Sbjct: 558 RTVTFEKEDAGLNLQVQIDRIDDNGFVTLAVAPSISAPTDTFNIGTEEAVLLANRQLTSG 617 Query: 360 -VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + + G T+VL+G++++ + +P+L IP+LGALFRNS E+ + TP Sbjct: 618 QIRVRDGQTLVLSGIIQESDRNTVTKVPILGDIPLLGALFRNSDRENIRRELIVLLTP 675 >gi|74316224|ref|YP_313964.1| type IV pilus assembly protein PilQ [Thiobacillus denitrificans ATCC 25259] gi|74055719|gb|AAZ96159.1| type IV pilus assembly protein PilQ [Thiobacillus denitrificans ATCC 25259] Length = 745 Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + L+ P + + + A +G Q + T ++ +VT D + L P +L+ + Sbjct: 585 KILSNPRVMTSNQKPAVILNGTQIPFITPGTANSPATVTFKDAFLCLLVDPQILNNDALI 644 Query: 330 LRIQTEVSEPVIGVNAG---DM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + I+ + + + NA D+ P+ R+ T V + +G T+VL G+ + Sbjct: 645 MTIEVQ-KDAIDTANAAVGADIIAPAIATRRIKTQVRVNNGETLVLGGIFDQTEFNNVDK 703 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LF+ + ++TE+ + TP ++ Sbjct: 704 VPFLGDVPGLGNLFKRTNKQDQKTEMIVFITPRIL 738 >gi|254250197|ref|ZP_04943517.1| Type II secretory pathway, component PulD [Burkholderia cenocepacia PC184] gi|124876698|gb|EAY66688.1| Type II secretory pathway, component PulD [Burkholderia cenocepacia PC184] Length = 463 Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 50/101 (49%) Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +P + + I + V G ++P + R T + G ++++AG D+++ K Sbjct: 256 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNKS 315 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G+P LS IP++G LF+ + + E F TP +V +M Sbjct: 316 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASM 356 >gi|206563896|ref|YP_002234659.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|18092668|gb|AAL59397.1| BcscC [Burkholderia cenocepacia] gi|28394249|gb|AAO31724.1| BcscC [Burkholderia cenocepacia] gi|198039936|emb|CAR55914.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 681 Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 50/101 (49%) Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +P + + I + V G ++P + R T + G ++++AG D+++ K Sbjct: 505 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKS 564 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G+P LS IP++G LF+ + + E F TP +V +M Sbjct: 565 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTSASM 605 >gi|16330870|ref|NP_441598.1| general secretion pathway protein D [Synechocystis sp. PCC 6803] gi|1653364|dbj|BAA18278.1| general secretion pathway protein D [Synechocystis sp. PCC 6803] Length = 785 Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 16/180 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSAS--FTSGGQHLYKTVSSSTGATSVTT---- 309 F+ + A R+ + L +PTL G++A T T + G T+V T Sbjct: 573 FQAQIDAQIRSGNAKILTDPTLIVQEGEAAQVKLTESVIASVDTQVDTQGDTAVRTITPV 632 Query: 310 -HDYGVVLH-FTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYR-VRKADTT--- 359 D G+ L+ + G I LR+ V+ P V AG + + K + T Sbjct: 633 LEDVGLTLNVIVDRIDDNGFITLRVNPIVASPAGTQVFDSGAGAINEITLINKRELTSGV 692 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V L T +L+G++ + + +P+L +P++GALFR S + +E+ I TP ++ Sbjct: 693 VRLRDDQTFILSGIISELQRSTTSKVPILGDLPVIGALFRQSTDTTDRSEVIILMTPKII 752 >gi|102227325|gb|ABF70182.1| AscC [Aeromonas hydrophila] Length = 614 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 9/108 (8%) Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365 YG +L TP V+ G + L I+ +P G++ +P+ DT + G Sbjct: 403 YGTMLRMTPRVIQLGDRPEVSLSLHIEDGNQKPNSSGLDG--IPTISRTVVDTIARVGHG 460 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIFI 412 ++++ G+ +D++ + +P L IP LGALFR+ R + +FI Sbjct: 461 QSLLIGGIYRDELSESLSKVPFLGDIPYLGALFRSKESQTRRQVRLFI 508 >gi|149923951|ref|ZP_01912337.1| type IV pilus secretin PilQ [Plesiocystis pacifica SIR-1] gi|149815183|gb|EDM74732.1| type IV pilus secretin PilQ [Plesiocystis pacifica SIR-1] Length = 1125 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 3/161 (1%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E +R ++ P + + A G Q VS+ T G L T Sbjct: 959 LSAAENEGDVRIISAPKIVTLDNTEAQIEQGVQIPIAQVSAQGVNTRYVNATLG--LRVT 1016 Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P V + G + L ++ + +E + A P+ + A + + + G T V+ G+ + Sbjct: 1017 PQVTNEGAVLLEVEVQKNEADFVNTGARGDPTILTKSARSQLLITDGDTAVIGGIYTRNQ 1076 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P + IPI+G F+N + +E+ I TP +V Sbjct: 1077 AINHSKVPWFADIPIIGWFFKNRTERDDRSEMLIFLTPRIV 1117 >gi|289765568|ref|ZP_06524946.1| general secretion pathway protein D [Fusobacterium sp. D11] gi|289717123|gb|EFD81135.1| general secretion pathway protein D [Fusobacterium sp. D11] Length = 423 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360 G+++ P + I L I E+S+ + +N+G S +V R T V Sbjct: 304 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 363 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++I Sbjct: 364 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 415 >gi|172063770|ref|YP_001811421.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia ambifaria MC40-6] gi|171996287|gb|ACB67205.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MC40-6] Length = 680 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 50/101 (49%) Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +P + + I + V G ++P + R T + G ++++AG D+++ K Sbjct: 504 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKS 563 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G+P LS IP++G LF+ + + E F TP +V +M Sbjct: 564 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTASM 604 >gi|296328369|ref|ZP_06870896.1| general secretion pathway protein D [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154548|gb|EFG95338.1| general secretion pathway protein D [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 515 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360 G+++ P + I L I E+S+ + +N+G S +V R T V Sbjct: 396 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 455 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++I Sbjct: 456 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 507 >gi|217425412|ref|ZP_03456906.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] gi|217391663|gb|EEC31691.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] Length = 588 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + AL+ + ++ A P + + A + + K +S SV+T GV L Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P ++ G RI + + + + G ++P + +T + G ++++AG Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P LSKIP+LGALFR ++ E +P ++ P Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 586 >gi|87123518|ref|ZP_01079369.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. RS9917] gi|86169238|gb|EAQ70494.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. RS9917] Length = 771 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADT-TVELPSGGTIVLAGLLKDDIQQL 381 G I + E+S PV G+ + + R DT + + G T++L G++ D +++ Sbjct: 648 GFITFALSPEISAPVGSEQVGNCGAITIINDRSLDTGKIRVRDGQTLILTGVINDTDREV 707 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P+L +P +G FR+S R ++E+ I TP ++ Sbjct: 708 VSKWPILGDLPFVGQFFRSSGGQRSKSELVILVTPRII 745 >gi|328469624|gb|EGF40560.1| putative type III secretion system EscC protein [Vibrio parahaemolyticus 10329] Length = 488 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 83/213 (38%), Gaps = 7/213 (3%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLD 252 D+V L IA + +Q+ F + S+ + F D S G D V + Sbjct: 259 DEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGVYDLVVPPFSE 318 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F AL R + E L A+ Q F +S+ T D Sbjct: 319 TIDFLRNFQALASNGIARGVYETNLLALENQQGHFGKKQTATIALISNKQVETQKIEADN 378 Query: 313 GVVLHFTPTVLSPGRIGLRIQ----TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 L+ T +L G + RIQ + + N+ P + ++ V + G TI Sbjct: 379 S--LYVTGRLLPSGDVQARIQYVEESLDDDEEDSDNSNRPPRVSSQSLNSEVYIKPGQTI 436 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +L G QQ + GIP+LS IP+LG LF+++ Sbjct: 437 ILGGFDNTVTQQTESGIPVLSSIPLLGELFKST 469 >gi|256027610|ref|ZP_05441444.1| general secretion pathway protein D [Fusobacterium sp. D11] Length = 515 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360 G+++ P + I L I E+S+ + +N+G S +V R T V Sbjct: 396 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 455 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++I Sbjct: 456 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 507 >gi|30524891|gb|AAP34336.1|AF499777_4 HrcC [Xanthomonas axonopodis pv. glycines] Length = 607 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 21/241 (8%) Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSF------AADFGGKFVSEGG 243 + TI E+R ++ +G QH+ TG+ SG F AA G + G Sbjct: 371 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGNGSGSQLGFNGALSGAATDGATTPAGGT 430 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 +V G R+ T + ALE + ++ P + + A Q + S Sbjct: 431 LTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGYA 487 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTTV 360 + + GV L P+V+ PG +R+ + + +G N D +P + T Sbjct: 488 SADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQA 546 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606 Query: 421 P 421 P Sbjct: 607 P 607 >gi|88809802|ref|ZP_01125308.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 7805] gi|88786186|gb|EAR17347.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 7805] Length = 765 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 344 NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 N G++ R+ DT + + G T+VL G+++D Q P+L IP +G FR+S Sbjct: 663 NCGNISLINSRELDTGKIRVRDGQTLVLTGVIQDSDVQAVTKWPILGDIPFIGQFFRSSG 722 Query: 403 FNREETEIFIAATPFLV 419 +R + E+ I TP ++ Sbjct: 723 GSRTKRELVILVTPRII 739 >gi|260495319|ref|ZP_05815446.1| general secretion pathway protein D [Fusobacterium sp. 3_1_33] gi|260197097|gb|EEW94617.1| general secretion pathway protein D [Fusobacterium sp. 3_1_33] Length = 515 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360 G+++ P + I L I E+S+ + +N+G S +V R T V Sbjct: 396 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 455 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++I Sbjct: 456 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 507 >gi|237741044|ref|ZP_04571525.1| general secretion pathway protein D [Fusobacterium sp. 4_1_13] gi|229431088|gb|EEO41300.1| general secretion pathway protein D [Fusobacterium sp. 4_1_13] Length = 423 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360 G+++ P + I L I E+S+ + +N+G S +V R T V Sbjct: 304 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 363 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++I Sbjct: 364 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 415 >gi|107025868|ref|YP_623379.1| Type III secretion system outer membrane pore YscC/HrcC [Burkholderia cenocepacia AU 1054] gi|116692948|ref|YP_838481.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia cenocepacia HI2424] gi|105895242|gb|ABF78406.1| Type III secretion system outer membrane pore YscC/HrcC [Burkholderia cenocepacia AU 1054] gi|116650948|gb|ABK11588.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia cenocepacia HI2424] Length = 681 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 50/101 (49%) Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +P + + I + V G ++P + R T + G ++++AG D+++ K Sbjct: 505 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNKS 564 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G+P LS IP++G LF+ + + E F TP +V +M Sbjct: 565 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASM 605 >gi|170737787|ref|YP_001779047.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia cenocepacia MC0-3] gi|169819975|gb|ACA94557.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia cenocepacia MC0-3] Length = 681 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 50/101 (49%) Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +P + + I + V G ++P + R T + G ++++AG D+++ K Sbjct: 505 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNKS 564 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G+P LS IP++G LF+ + + E F TP +V +M Sbjct: 565 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASM 605 >gi|256846641|ref|ZP_05552097.1| general secretion pathway protein D [Fusobacterium sp. 3_1_36A2] gi|256717861|gb|EEU31418.1| general secretion pathway protein D [Fusobacterium sp. 3_1_36A2] Length = 515 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360 G+++ P + I L I E+S+ + +N+G S +V R T V Sbjct: 396 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 455 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++I Sbjct: 456 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 507 >gi|113475300|ref|YP_721361.1| type II and III secretion system protein [Trichodesmium erythraeum IMS101] gi|110166348|gb|ABG50888.1| type II and III secretion system protein [Trichodesmium erythraeum IMS101] Length = 801 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + L G T++++G++++ + +PLL +PI+GALFR+S+ E E + TP Sbjct: 712 IRLRDGQTLIISGIIQEQERTAVTKVPLLGDLPIIGALFRSSQNQNERAETIVLLTP 768 >gi|302877407|ref|YP_003845971.1| type IV pilus secretin PilQ [Gallionella capsiferriformans ES-2] gi|302580196|gb|ADL54207.1| type IV pilus secretin PilQ [Gallionella capsiferriformans ES-2] Length = 705 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 4/162 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV-LHF 318 L+A E + +A P + AS SG + Y T++ + G+ T + L Sbjct: 541 LNASETDGITKNIASPRVVTADKTKASIKSGVEIPY-TIAGTVGSPPTTAFKTAALSLDV 599 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 TP + I + + S+ +G +PS + T V + +GGT+V+ G+ D+ Sbjct: 600 TPRITPDNNINMTLV--ASQDTVGALYSGVPSINSKMVTTEVLIENGGTVVVGGVFTQDV 657 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +PLL IP+LG +F+N + E+ I TP +++ Sbjct: 658 ADTVNKVPLLGDIPVLGWMFKNKVKTDAKNELLIFITPKIMQ 699 >gi|289524045|ref|ZP_06440899.1| putative bacterial type II/III secretion system short domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502701|gb|EFD23865.1| putative bacterial type II/III secretion system short domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 589 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---- 327 LA P++ + GQ AS Y + G + G L FTP V GR Sbjct: 418 LASPSVVTVDGQKASIALTTNIKYISERDDAGNPVYSEERVGPKLDFTPIV---GRDDTV 474 Query: 328 -IGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I + I T EV E G ++P R+ T V + +G V+ GL I Sbjct: 475 TINVAISTGEVVEWRPGGMGEEVPVTSSREVTTMVRVRNGEPFVIGGLFDRRKTDTVSKI 534 Query: 386 PLLSKIPILGALFRNSRFNRE 406 P+L+ IP+LG +F+ +R R+ Sbjct: 535 PVLADIPLLGEIFK-TRTKRD 554 >gi|153836074|ref|ZP_01988741.1| VcsC2 [Vibrio parahaemolyticus AQ3810] gi|149750828|gb|EDM61573.1| VcsC2 [Vibrio parahaemolyticus AQ3810] Length = 487 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 4/142 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 AL R++ E L A+ Q + F +S T D L+ T Sbjct: 327 FQALYSNGIARSVYETNLVALENQQSQFGKKQTATLTLISDKQVKTEKIEADNS--LYVT 384 Query: 320 PTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 +L G++ RIQ E + ++ P + ++ V + T++L G Sbjct: 385 GRLLPSGQVQARIQYVEEALDEDDNEDSNRPPRVSSQSLNSEVYIQPNQTVILGGFDNTV 444 Query: 378 IQQLKEGIPLLSKIPILGALFR 399 QQ + G+P++S IP+LG LF+ Sbjct: 445 TQQQESGVPIISSIPLLGELFK 466 >gi|134294019|ref|YP_001117755.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia vietnamiensis G4] gi|134137176|gb|ABO58290.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia vietnamiensis G4] Length = 679 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 50/101 (49%) Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +P + + I + V G ++P + R T + G ++++AG D+++ K Sbjct: 504 TPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKS 563 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G+P LS IP++G LF+ + + E F TP +V +M Sbjct: 564 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASM 604 >gi|237743199|ref|ZP_04573680.1| general secretion pathway protein D [Fusobacterium sp. 7_1] gi|229433495|gb|EEO43707.1| general secretion pathway protein D [Fusobacterium sp. 7_1] Length = 423 Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360 G+++ P + I L I E+S+ + +N+G S +V R T V Sbjct: 304 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 363 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++I Sbjct: 364 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 415 >gi|34762860|ref|ZP_00143844.1| General secretion pathway protein D [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887468|gb|EAA24554.1| General secretion pathway protein D [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 423 Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 12/112 (10%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSY---RV-RKADTTV 360 G+++ P + I L I E+S+ + +N+G S +V R T V Sbjct: 304 GLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKV 363 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++I Sbjct: 364 RVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 415 >gi|17228526|ref|NP_485074.1| general secretion pathway protein D [Nostoc sp. PCC 7120] gi|17130377|dbj|BAB72988.1| general secretion pathway protein D [Nostoc sp. PCC 7120] Length = 823 Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 34/57 (59%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + L G T++L+G+++D + IP+L IP++G+LFR + E E+ + TP Sbjct: 732 IRLRDGQTLILSGIIQDQDRTSVSKIPILGDIPLIGSLFRKTNRTNERREVIVLLTP 788 >gi|38639336|gb|AAR25802.1| BcscC [Burkholderia multivorans E243] Length = 504 Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%) Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V G ++P + R T + G ++++AG D+++ K G+P LS IP++G LF+ Sbjct: 344 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 403 Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424 + + E F TP +V +M Sbjct: 404 YTDKSGNHMERFYLLTPRVVSSASM 428 >gi|329901079|ref|ZP_08272701.1| Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) [Oxalobacteraceae bacterium IMCC9480] gi|327549244|gb|EGF33826.1| Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) [Oxalobacteraceae bacterium IMCC9480] Length = 432 Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust. Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 21/223 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-SEGGDFSVKG---- 249 Q+ ++ I ++ R L Q+G + T S +A F G S+G + G Sbjct: 69 QIEIEALIVDIDRSQLNQLGAEWGFTAGS------VSATFNGMSTDSKGASLPISGSTLL 122 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + + +F L+A+E R LA+ T++ + +A V + Sbjct: 123 IKNAANFYAKLNAMENKGDARILAKQTISTLENIAAVLDLSQSRYLPLVGER--VVDLAN 180 Query: 310 HDYGVVLHFTPTVLSPGRIG-LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE--LPSGG 366 + G +L TP ++ G + +R+ + + +A S V ++ T + + Sbjct: 181 VNVGTMLKVTPRIVREGPLTRVRLDINIEDGAFSADAAS--STNVTRSTITTQAIIEPQH 238 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN---SRFNRE 406 T+++ G + Q ++ IP+L IP+ G LF+N S NRE Sbjct: 239 TLLIGGYHSEAKTQSRQKIPVLGDIPVFGGLFQNNSDSVNNRE 281 >gi|170698153|ref|ZP_02889232.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] gi|170136918|gb|EDT05167.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] Length = 619 Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust. Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 16/207 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ L + I ++++ L Q+G S+ S SF G D S LD Sbjct: 370 QIQLSLWIIDIKKSCLDQLGVNWQGVFGSNRISGSF----------NGADNST--TLDGP 417 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL++ ++ P L A F + K + A S+ YG Sbjct: 418 KFLVSVMALQQKGDATIVSRPVLLTQENMPAVFDNNQTFYAKLIGER--AVSLEHVTYGT 475 Query: 315 VLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAG 372 +++ P + G + +++ E +A +P + DT +P ++++ G Sbjct: 476 MINVLPRLTDNGSEVEMQVDVEDGNATDTNDAASPLPLVDRTEIDTVARVPREKSLLIGG 535 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFR 399 +DD ++ + IP L+ +P++G LFR Sbjct: 536 NTRDDARRHRYRIPGLASLPLIGGLFR 562 >gi|161520290|ref|YP_001583717.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia multivorans ATCC 17616] gi|189353532|ref|YP_001949159.1| putative type II secretory pathway [Burkholderia multivorans ATCC 17616] gi|160344340|gb|ABX17425.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans ATCC 17616] gi|189337554|dbj|BAG46623.1| putative type II secretory pathway [Burkholderia multivorans ATCC 17616] Length = 678 Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%) Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V G ++P + R T + G ++++AG D+++ K G+P LS IP++G LF+ Sbjct: 518 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 577 Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424 + + E F TP +V +M Sbjct: 578 YTDKSGNHMERFYLLTPRVVSSASM 602 >gi|298489848|ref|YP_003720025.1| type II and III secretion system protein ['Nostoc azollae' 0708] gi|298231766|gb|ADI62902.1| type II and III secretion system protein ['Nostoc azollae' 0708] Length = 818 Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 34/57 (59%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + L G T++L+G+++D + +P+L IP+LG+LFR + E E+ + TP Sbjct: 726 LRLRDGQTLILSGIIQDQDRTTISKLPILGDIPLLGSLFRKTNRQNERREVIVLLTP 782 >gi|221200554|ref|ZP_03573596.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD2M] gi|221206234|ref|ZP_03579248.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD2] gi|221174246|gb|EEE06679.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD2] gi|221179895|gb|EEE12300.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD2M] Length = 678 Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%) Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V G ++P + R T + G ++++AG D+++ K G+P LS IP++G LF+ Sbjct: 518 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 577 Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424 + + E F TP +V +M Sbjct: 578 YTDKSGNHMERFYLLTPRVVSSASM 602 >gi|146305583|ref|YP_001186048.1| type IV pilus secretin PilQ [Pseudomonas mendocina ymp] gi|145573784|gb|ABP83316.1| type IV pilus secretin PilQ [Pseudomonas mendocina ymp] Length = 706 Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 1/165 (0%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E+ +++P + ++A G + Y+ SSS ATS + + + L T Sbjct: 539 LSAMEKTGNGEIVSQPKVVTSDKETAKILKGQEVPYQEASSSG-ATSTSFKEAALALEVT 597 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + RI + ++ P +P + + V + G TIV+ G+ + Sbjct: 598 PQITPDNRIIMEVKVTKDAPDFANLVNGVPPLNKNEVNAKVLVNDGETIVIGGVFSNTQT 657 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 E +P L +P LG +FR + E+ + TP ++ A+ Sbjct: 658 NAVEKVPFLGDLPFLGRVFRRDIVRDNKAELLVFITPRIMNNQAI 702 >gi|221209590|ref|ZP_03582571.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD1] gi|221170278|gb|EEE02744.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD1] Length = 678 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%) Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V G ++P + R T + G ++++AG D+++ K G+P LS IP++G LF+ Sbjct: 518 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 577 Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424 + + E F TP +V +M Sbjct: 578 YTDKSGNHMERFYLLTPRVVSSASM 602 >gi|213419653|ref|ZP_03352719.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 173 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 14/134 (10%) Query: 312 YGVVLHFTPTVLSPGRIGLRI-------QTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 YG ++ P + G+I + + +T S+ V+A +P T +P Sbjct: 17 YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDA--LPEVGRTLISTIARVPH 74 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G ++++ G +D + IP+L K+P++G+LFR S N+ F+++P + Sbjct: 75 GKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN-----VVRVFMIEPKEI 129 Query: 425 RDLSRPDDHYSVED 438 D PD SV + Sbjct: 130 VDPLTPDASESVNN 143 >gi|237750361|ref|ZP_04580841.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229373891|gb|EEO24282.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 756 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 20/170 (11%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG-----QHLYKTVSSSTGATSVTTH 310 +++ + L +R+L+ P + A++ Q A + G Q+L +++ T+ Sbjct: 577 LQSIFNLLRTYGDLRSLSNPKIMALNNQPALISVGSVLRYTQNLVYQSNNTNTTIQNTST 636 Query: 311 DY-----GVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDM----PSYRVRKADT 358 Y G++L TP++ S + LRI T+ +P + NA + P+ + + Sbjct: 637 QYPSVFAGILLDITPSI-SHDSVILRINPSITKTKDPDME-NAAEALKAPPNLSTNQLSS 694 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREE 407 V+L G +++ GLL + +Q + IP + + L +F + SR NR E Sbjct: 695 IVKLKDGERVIIGGLLNNVVQNTSQAIPKIGENKWLKNIFGKQSRTNRSE 744 >gi|294784349|ref|ZP_06749640.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27] gi|294487921|gb|EFG35276.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27] Length = 127 Score = 43.1 bits (100), Expect = 0.087, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E ++++I Sbjct: 61 RGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 119 >gi|229529211|ref|ZP_04418601.1| hypothetical protein VCG_002304 [Vibrio cholerae 12129(1)] gi|229332985|gb|EEN98471.1| hypothetical protein VCG_002304 [Vibrio cholerae 12129(1)] Length = 489 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 6/158 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 AL R++ E L A+ Q F +S+ T D L+ T Sbjct: 327 FQALYTNGIARSVYETNLLALENQQGQFGKKQTATLTLISNREVKTEKIEADNS--LYVT 384 Query: 320 PTVLSPGRIGLRIQ-TEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLK 375 +L G++ RIQ E + G N+ P + ++ V + G T++L G Sbjct: 385 GRLLPSGQVQARIQYVEEALDDEGENSDGSQRPPRVSSQSLNSEVYIQPGQTVILGGFDN 444 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 QQ + G+P+LS IP+LG LF+ + ++ + + +++ Sbjct: 445 TVTQQQESGVPVLSSIPLLGELFKYTSESKHKYKRYVS 482 >gi|171319944|ref|ZP_02909020.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] gi|171094800|gb|EDT39838.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] Length = 679 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 50/101 (49%) Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +P + + I + V G ++P + R T + G ++++AG D+++ K Sbjct: 504 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKS 563 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G+P LS IP++G LF+ + + E F TP +V +M Sbjct: 564 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTASM 604 >gi|145589562|ref|YP_001156159.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047968|gb|ABP34595.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 759 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 6/156 (3%) Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + +A PTLTA+ ++F SG +T GV L TPT + + Sbjct: 512 QVIARPTLTALDRIPSTFYSGAVITAGLNGGGVSGAQITNIPTGVSLSVTPTFVDEESMM 571 Query: 330 LRIQTEVSEPVIGVNAG-----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L ++ S V NAG S V++ G T++L GL + L++G Sbjct: 572 LAVKVSRSY-VTSQNAGYGGFNASVSQDQHAVTANVKIKYGETLILDGLSSRAVSGLQDG 630 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P+L IPI+ F + + + + TP V+ Sbjct: 631 VPVLQDIPIIQYFFNQKQQQQYSENVVVLVTPRKVQ 666 >gi|260221518|emb|CBA30162.1| hypothetical protein Csp_C22170 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 520 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 28/208 (13%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---- 297 GG F + L F VL LE ++TL+ P + ++ Q A G + T Sbjct: 284 GGLFGL--ALATSQFGAVLGFLETQGDVQTLSSPRVATLNNQKAVLKVGTDEFFVTNVSG 341 Query: 298 ------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ------TEVSEP 339 +S+ ++T G+ L TP + + L + TE S+ Sbjct: 342 GTNSSSGTSSSTTTSTLPTVTLTPFFSGISLDVTPQIDDGVNVTLHVHPSLTTVTEKSKQ 401 Query: 340 VIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + +AG+ + S V + DT V + G + + GL++ + + GIP + +P LG Sbjct: 402 IDLGSAGNFKLPLASSAVNETDTLVRIQDGSIVAIGGLMQLESSRNASGIPGTTSMPGLG 461 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVA 423 ALF N + E+ + P +++ A Sbjct: 462 ALFGNRATQGRKKEVIVLIKPTIIRTAA 489 >gi|317968183|ref|ZP_07969573.1| general (type II) secretion pathway protein D precursor [Synechococcus sp. CB0205] Length = 729 Score = 43.1 bits (100), Expect = 0.100, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 345 AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 G + + R+ DT V + G T++L G++ D Q + P+L IP +G FR+S Sbjct: 628 CGTVNTLTTRRLDTGEVRVRDGQTLILTGVISDYDQAVVRKWPVLGDIPFVGQFFRDSIN 687 Query: 404 NREETEIFIAATPFLVK 420 RE+ E+ I +P +++ Sbjct: 688 RREKRELVILVSPRIIR 704 >gi|186685099|ref|YP_001868295.1| type II and III secretion system protein [Nostoc punctiforme PCC 73102] gi|186467551|gb|ACC83352.1| type II and III secretion system protein [Nostoc punctiforme PCC 73102] Length = 792 Score = 43.1 bits (100), Expect = 0.100, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 37/58 (63%) Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 ++ L G T++L+G+++D + IP+L +P++G+LFR++ + + E+ + TP Sbjct: 700 SIRLRDGQTLILSGIIQDSDRTTVSKIPILGDLPLIGSLFRSTNRSNQRNEVIVLLTP 757 >gi|315499170|ref|YP_004087974.1| type II and iii secretion system protein [Asticcacaulis excentricus CB 48] gi|315417182|gb|ADU13823.1| type II and III secretion system protein [Asticcacaulis excentricus CB 48] Length = 543 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 8/165 (4%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P LTA G+ + F G K + + D G + TP ++ R LR Sbjct: 323 VARPMLTAYRGEPSDFFVG--RSTKVAVKGVNFSQLENIDIGTQVKVTPVEITSDRTRLR 380 Query: 332 IQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I+ S EP N + ++R + TTVE+ G T++L+GL + PL Sbjct: 381 IEVTRSFLSGEPAGNFNEA-LNTWR-QTVSTTVEVRFGTTLILSGLSESVRDSSVTKTPL 438 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 + P++G+ F N+ + + TP + + + SR D Sbjct: 439 IGDAPLIGSGFNRRVTNQRRDAVLVLVTPSPARVMESQGWSRQAD 483 >gi|327251623|gb|EGE63309.1| hypothetical protein ECSTEC7V_3473 [Escherichia coli STEC_7v] Length = 505 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 244 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 289 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 290 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 347 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P S +I L + E + N D+P T +P G +++ Sbjct: 348 YGTMISVLPRFASRNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 407 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 408 IGGYTRDTNTYESRKIPILGSIPFIGKLF 436 >gi|194292010|ref|YP_002007917.1| sctc: non flagellar t3S system conserved protein. gsp d family [Cupriavidus taiwanensis LMG 19424] gi|193225914|emb|CAQ71861.1| SctC: non flagellar T3S system conserved protein. GSP D family [Cupriavidus taiwanensis LMG 19424] Length = 580 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 36/74 (48%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P R R T + G ++++AG ++ G+PLL +PI+G LF+ + Sbjct: 504 IPVVRRRSITTQAMVEEGKSLLIAGYTTEEKINASSGVPLLQDVPIIGNLFKYQEKRQNN 563 Query: 408 TEIFIAATPFLVKP 421 E F TP LV P Sbjct: 564 MERFYLLTPRLVIP 577 >gi|167621192|ref|ZP_02389823.1| Type II secretory pathway, component PulD [Burkholderia thailandensis Bt4] Length = 400 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 14/166 (8%) Query: 234 FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 +GGK G RFS + + AL+ + R +++P + +SG+ G Sbjct: 213 WGGKLSLSNGATDADPTALRFSSSMLDVAISALDADSRFRQISDPHVRVVSGERVRLNVG 272 Query: 291 GQ-----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---G 342 Q + S T SV D G++ P V+ + +R+ ++S V G Sbjct: 273 AQVPTLGSISYQGQSGTPVQSVEYQDAGLIFDVQPVVMG-DVVQVRLAEQLSSFVTTTTG 331 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 VN + P+ R+ T V + G +VL GL++D + I L Sbjct: 332 VN--NSPTKNTREMSTVVNMKDGEVVVLGGLVQDQDTSSRNSIGWL 375 >gi|323978511|gb|EGB73593.1| YscC/HrcC family protein type III secretion outer membrane pore [Escherichia coli TW10509] Length = 567 Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P S +I L + E + N D+P T +P G +++ Sbjct: 410 YGTMISVLPRFASRNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498 >gi|323966662|gb|EGB62094.1| YscC/HrcC family protein type III secretion outer membrane pore [Escherichia coli M863] Length = 567 Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P S +I L + E + N D+P T +P G +++ Sbjct: 410 YGTMISVLPRFASRNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498 >gi|83647801|ref|YP_436236.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC 2396] gi|83635844|gb|ABC31811.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC 2396] Length = 615 Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 38/72 (52%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P + +T + G ++++ G +D + G+PLL IP+LGALFR + NR++ Sbjct: 449 IPVIKTSSINTQTVVGLGQSLLIGGFFQDYESESVGGVPLLKDIPLLGALFRTTNHNRKK 508 Query: 408 TEIFIAATPFLV 419 TP ++ Sbjct: 509 MVKLFLMTPKII 520 >gi|254254350|ref|ZP_04947667.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] gi|124898995|gb|EAY70838.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] Length = 702 Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%) Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V G ++P + R T + G ++++AG D+++ K G+P LS IP++G LF+ Sbjct: 519 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 578 Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424 + + E F TP +V +M Sbjct: 579 YTDKSGNHMERFYLLTPRVVTNASM 603 >gi|21241188|ref|NP_640770.1| HrcC protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106496|gb|AAM35306.1| HrcC protein [Xanthomonas axonopodis pv. citri str. 306] Length = 607 Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 21/241 (8%) Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSF------AADFGGKFVSEGG 243 + TI E+R ++ +G QH+ TG+ SG F AA G + G Sbjct: 371 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGNGSGGQLGFNGALSGAATDGATTPAGGT 430 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 +V G R+ T + ALE + ++ P + + A Q + S Sbjct: 431 LTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGYA 487 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTTV 360 + + GV L P+V+ PG +R+ + + +G N D +P + T Sbjct: 488 SADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQA 546 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606 Query: 421 P 421 P Sbjct: 607 P 607 >gi|28901194|ref|NP_800849.1| putative type III secretion system EscC protein [Vibrio parahaemolyticus RIMD 2210633] gi|260362753|ref|ZP_05775622.1| protein VcsC2 [Vibrio parahaemolyticus K5030] gi|260880041|ref|ZP_05892396.1| protein VcsC2 [Vibrio parahaemolyticus AN-5034] gi|260895158|ref|ZP_05903654.1| protein VcsC2 [Vibrio parahaemolyticus Peru-466] gi|28809707|dbj|BAC62682.1| putative type III secretion system EscC protein [Vibrio parahaemolyticus RIMD 2210633] gi|308085690|gb|EFO35385.1| protein VcsC2 [Vibrio parahaemolyticus Peru-466] gi|308092233|gb|EFO41928.1| protein VcsC2 [Vibrio parahaemolyticus AN-5034] gi|308112426|gb|EFO49966.1| protein VcsC2 [Vibrio parahaemolyticus K5030] Length = 487 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 6/143 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 AL R++ E L A+ Q + F +S T D L+ T Sbjct: 327 FQALYSNGIARSVYETNLVALENQQSQFGKKQTATLTLISDKQVKTEKIEADNS--LYVT 384 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKD 376 +L G++ RIQ V E + + D P + ++ V + T++L G Sbjct: 385 GRLLPSGQVQARIQY-VEESLDEDDNEDSNRPPRVSSQSLNSEVYIQPNQTVILGGFDNT 443 Query: 377 DIQQLKEGIPLLSKIPILGALFR 399 QQ + G+P++S IP+LG LF+ Sbjct: 444 VTQQQESGVPIISSIPLLGELFK 466 >gi|157163960|ref|YP_001466804.1| type II and III secretion system protein [Campylobacter concisus 13826] gi|112801256|gb|EAT98600.1| bacterial type II and III secretion system protein [Campylobacter concisus 13826] Length = 380 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 14/213 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 +QVT K+TI E +K +G Q + + G + +++ +K Sbjct: 155 EQVTFKLTITETNLKDIKDLGTNLQGLLKPLNHGDLAYYINLITSPYITNSN--VIKN-- 210 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVT 308 D +F +L+ L+ + ++ P LTA + F+S Y KT S+ Sbjct: 211 DDSAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTD 270 Query: 309 THDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +++Y G+ ++ P +LS I + + E ++ ++ P ++ ++ L G Sbjct: 271 SYEYKDIGLKINLKPIILS-DHIDFDLHL-ILEDILSQSSSLTPIVSKKELKSSYSLKRG 328 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 +VL+G+ K + + G+P+L I +L LF Sbjct: 329 DVLVLSGINKKTTAKQRNGVPVLKDIWLLKYLF 361 >gi|220922544|ref|YP_002497846.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060] gi|219947151|gb|ACL57543.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060] Length = 217 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + I V I VP + DVLV + ADV + S R + + K G+ N+IL+G + K + Sbjct: 52 LRINAGSVEIFAVPEPMSDVLVGESRIADVAIISDRRIAVTAKAPGRTNIILMGENRKLL 111 Query: 110 LNLDILI 116 LD+L+ Sbjct: 112 SKLDVLV 118 >gi|83859353|ref|ZP_00952874.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii HTCC2633] gi|83852800|gb|EAP90653.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii HTCC2633] Length = 146 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 50/85 (58%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 AA++ + + + ++ + ++ ++++P D V+V +P AD +++ RT+++ GK Sbjct: 8 AALVMTLGLGVAQAREFVVTADQAGLIRLPGDASGVIVGNPGIADAMLYDSRTLFVTGKV 67 Query: 94 VGQANVILIGHDGKQMLNLDILIER 118 G+ N+I++ G+ + D+++ + Sbjct: 68 FGRTNLIVLDEAGRVLYTSDLVVTQ 92 >gi|254430712|ref|ZP_05044415.1| general secretion pathway protein D [Cyanobium sp. PCC 7001] gi|197625165|gb|EDY37724.1| general secretion pathway protein D [Cyanobium sp. PCC 7001] Length = 849 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 353 VRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 VR+ DT V + G T++L G++ D + + P+L IP++G FR++ +E+ E+ Sbjct: 754 VRRLDTGAVRVRDGQTLILTGVISDFDRSVVSKWPILGDIPLIGQFFRSTSNQKEKRELV 813 Query: 412 IAATPFLVK 420 I TP ++ Sbjct: 814 IMVTPRIIN 822 >gi|89111175|dbj|BAE80264.1| HrcC [Acidovorax avenae subsp. avenae] Length = 683 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 31/230 (13%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V L+ TI EV D + +G S+ +S S A + G S L Sbjct: 448 VELEATIIEVNSDSVDALGVNWSLRAGTS----SIATNLPGP--------STPAALSTIV 495 Query: 256 FETVLH------ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + H ALE R L++P++ ++ ++A K V++ A ++ Sbjct: 496 LDAGRHLLANVNALEAQGKARILSKPSVLGVANRAAVMRE------KRVATVRVAGNLEA 549 Query: 310 H----DYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELP 363 + + G +L TP V + G+ +++ + + N D +P + + T + Sbjct: 550 NLFQIEAGTLLQMTPQVTAVEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVR 609 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS-RFNREETEIFI 412 G ++++ G+ + +P LSK+P++G +FRN+ R R +F+ Sbjct: 610 EGESLLIGGITVESENTQDNAVPGLSKLPVVGGVFRNTERLTRRTERLFL 659 >gi|326315361|ref|YP_004233033.1| type III secretion outer membrane pore, YscC/HrcC family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372197|gb|ADX44466.1| type III secretion outer membrane pore, YscC/HrcC family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 683 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 31/230 (13%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V L+ TI EV D + +G S+ +S S A + G S L Sbjct: 448 VELEATIIEVNSDSVDALGVNWSLRAGTS----SIATNLPGP--------STPAALSTIV 495 Query: 256 FETVLH------ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + H ALE R L++P++ ++ ++A K V++ A ++ Sbjct: 496 LDAGRHLLANVNALEAQGKARILSKPSVLGVANRAAVMRE------KRVATVRVAGNLEA 549 Query: 310 H----DYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELP 363 + + G +L TP V + G+ +++ + + N D +P + + T + Sbjct: 550 NLFQIEAGTLLQMTPQVTAVEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVR 609 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS-RFNREETEIFI 412 G ++++ G+ + +P LSK+P++G +FRN+ R R +F+ Sbjct: 610 EGESLLIGGITVESENTQDNAVPGLSKLPVVGGVFRNTERLTRRTERLFL 659 >gi|254253701|ref|ZP_04947018.1| type II and III secretion system protein [Burkholderia dolosa AUO158] gi|124898346|gb|EAY70189.1| type II and III secretion system protein [Burkholderia dolosa AUO158] Length = 620 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHF 318 + AL++ A + A P + ++ A + Q ++G SV+T G+ L Sbjct: 459 ISALQQTKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRV 515 Query: 319 TPTVLSP-GRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ GR +++ + + + ++P + +T + G +++AG D Sbjct: 516 LPMVVEEDGRTRIKLDVAIQDGQLTDQTVSNLPVIQNSTINTQAFIEEGQALLIAGYRAD 575 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G+P LSKIP++GALFR + E +P ++ P Sbjct: 576 SATMGVTGVPGLSKIPLIGALFRTDNRQKSHMERLFLLSPRVISP 620 >gi|221271462|dbj|BAH15014.1| putative type III secretion system apparatus protein VscC2 [Vibrio parahaemolyticus] Length = 488 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 83/213 (38%), Gaps = 7/213 (3%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLD 252 D+V L IA + +Q+ F + S+ ++F D S G D V + Sbjct: 259 DEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKENFGVDSSWVNGSRGVYDLVVPPFTE 318 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F AL R + E L + Q F +S+ T D Sbjct: 319 TIDFLRNFQALASNGIARGVYETNLLVLENQQGHFGKKQTATIALISNRQVETQKIEADN 378 Query: 313 GVVLHFTPTVLSPGRIGLRIQ----TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 L+ T +L G + RIQ + + N+ P + ++ V + G TI Sbjct: 379 S--LYVTGRLLPSGDVQARIQYIEESLDDDEEDSDNSNRPPRVSSQSLNSEVYIKPGQTI 436 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +L G QQ + GIP+LS IP+LG LF+++ Sbjct: 437 ILGGFDNTVTQQTESGIPVLSSIPLLGELFKST 469 >gi|332091472|gb|EGI96557.1| general secretion pathway protein D domain protein [Shigella boydii 3594-74] Length = 93 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L TP + + + I+ EVS+ V G + D+ + RK TTV G IVL GL+ Sbjct: 1 MLKVTPQINEGNAVQMVIEQEVSK-VEGQTSLDV-VFGERKLKTTVLANDGELIVLGGLM 58 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D + +PLL IP++G LF+++ +E Sbjct: 59 DDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 90 >gi|329847987|ref|ZP_08263015.1| bacterial type II and III secretion system family protein [Asticcacaulis biprosthecum C19] gi|328843050|gb|EGF92619.1| bacterial type II and III secretion system family protein [Asticcacaulis biprosthecum C19] Length = 545 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P LTA G+ A F G K + + + T D G + TP ++ G R Sbjct: 325 VARPMLTAYRGEPADFFVG--RSAKVAVTGVNFSQLETIDIGTQIKVTPVEITA--TGTR 380 Query: 332 IQTEVSEPVI-GVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 ++ EV+ + G AG+ + ++R + TTVE+ G T++L+GL + P Sbjct: 381 LRIEVTRSFLSGEPAGNFNESLNTWR-QTVSTTVEVAFGTTLILSGLSESVRDSSTTKTP 439 Query: 387 LLSKIPILGALFRNSRFNREETE-IFIAATPFLVKPVAMRDLSRP 430 L+ +P++G+ F N R ++ + + + TP A +RP Sbjct: 440 LVGDVPVVGSAF-NRRITTDKRDAVLVLVTPSPSMAFAGPQWARP 483 >gi|218706369|ref|YP_002413888.1| protein invG [Escherichia coli UMN026] gi|293406360|ref|ZP_06650286.1| invG [Escherichia coli FVEC1412] gi|293412219|ref|ZP_06654942.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B354] gi|298382096|ref|ZP_06991693.1| type III secretion protein SctC [Escherichia coli FVEC1302] gi|300896248|ref|ZP_07114795.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 198-1] gi|331674348|ref|ZP_08375108.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli TA280] gi|62085071|gb|AAX62936.1| putative type III secretion apparatus protein [Escherichia coli] gi|218433466|emb|CAR14368.1| Protein invG precursor [Escherichia coli UMN026] gi|284922811|emb|CBG35899.1| type III secretion system protein [Escherichia coli 042] gi|291426366|gb|EFE99398.1| invG [Escherichia coli FVEC1412] gi|291468990|gb|EFF11481.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B354] gi|298277236|gb|EFI18752.1| type III secretion protein SctC [Escherichia coli FVEC1302] gi|300359869|gb|EFJ75739.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 198-1] gi|331068442|gb|EGI39837.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli TA280] Length = 567 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P S +I L + E + N D+P T +P G +++ Sbjct: 410 YGTMISVLPRFASRNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498 >gi|89111142|dbj|BAE80232.1| HrcC [Acidovorax avenae subsp. avenae] Length = 683 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 31/230 (13%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V L+ TI EV D + +G S+ +S S A + G S L Sbjct: 448 VELEATIIEVNSDSVDALGVNWSLRAGTS----SIATNLPGP--------STPAALSTIV 495 Query: 256 FETVLH------ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + H ALE R L++P++ ++ ++A K V++ A ++ Sbjct: 496 LDAGRHLLANVNALEAQGKARILSKPSVLGVANRAAVMRE------KRVATVRVAGNLEA 549 Query: 310 H----DYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELP 363 + + G +L TP V + G+ +++ + + N D +P + + T + Sbjct: 550 NLFQIEAGTLLQMTPQVTAVEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVR 609 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS-RFNREETEIFI 412 G ++++ G+ + +P LSK+P++G +FRN+ R R +F+ Sbjct: 610 EGESLLIGGITVESENTQDNAVPGLSKLPVVGGVFRNTERLTRRTERLFL 659 >gi|34498087|ref|NP_902302.1| invasion protein - outer membrane [Chromobacterium violaceum ATCC 12472] gi|34103942|gb|AAQ60302.1| invasion protein - outer membrane [Chromobacterium violaceum ATCC 12472] Length = 561 Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust. Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 28/245 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 V L + I ++++D L Q+G S GS + +K G +++ G S LD Sbjct: 303 HVELSLWIIDLQKDDLDQLGVNWS--GSVTVGNKL------GVTLNQAGSLST---LDGT 351 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD--Y 312 F + A+ ++ P + A F + + Y + G SV Y Sbjct: 352 RFLAAVMAMTSKKKANVVSRPVVLTQENIPAIFDNN-RTFYAKLE---GERSVDLQHVTY 407 Query: 313 GVVLHFTPTVLSPGRIGLRIQTE----VSEPVIGVNAGD--MPSYRVRKADTTVELPSGG 366 G ++ P + G+I + + E P + D +P + T +P G Sbjct: 408 GTLISVLPRFAADGQIEMSLSIEDGSQARAPDYSSDNKDAGLPEVGRTRISTVARVPQGK 467 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G +D ++ + +PLL +P++G LFR + T FL++P + D Sbjct: 468 SLLIGGFTRDASERGEGKVPLLGDLPLVGGLFRYQSAKQTNT-----VRVFLIQPREIDD 522 Query: 427 LSRPD 431 PD Sbjct: 523 ALTPD 527 >gi|171317904|ref|ZP_02907080.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] gi|171096911|gb|EDT41783.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] Length = 460 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 20/211 (9%) Query: 214 GFQHSITGSSSGPSK-SFAAD-FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATA 268 G+ + +T + S S S AA GG+ GD S RF+ + + AL + Sbjct: 251 GWAYEVTNTDSANSAWSIAAKVLGGQLRISSGDTSSDSSAVRFTGPGIDAAISALNADSR 310 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVL 323 + ++ P + SG+ G Q ++ SS T S+T D G++ PTV+ Sbjct: 311 FKVISSPHVRIASGEKVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVM 370 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 I LR+ E+S+ V D P+ R+ T L G +VL GL++D + Sbjct: 371 RDA-IELRVHEEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGEVVVLGGLIQDRNATAR 429 Query: 383 EGIPLLSKIPILGALFRNSR-FNREETEIFI 412 G L F + R +++ TE+ + Sbjct: 430 SGYAWLPS-------FLDGRSSSKQRTEVLL 453 >gi|149177451|ref|ZP_01856055.1| hypothetical protein PM8797T_19156 [Planctomyces maris DSM 8797] gi|148843784|gb|EDL58143.1| hypothetical protein PM8797T_19156 [Planctomyces maris DSM 8797] Length = 1668 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 10/62 (16%) Query: 363 PSGGTIVLAGLLKDDIQQLKE-----GIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 P GGT++L G +++L+E G+P+L+K+P + LF+N+ RE + + TP Sbjct: 1600 PDGGTVLLGG-----VKRLREGRSMAGVPILNKLPYVSRLFKNTGVGRETESLMMMVTPR 1654 Query: 418 LV 419 ++ Sbjct: 1655 II 1656 >gi|148240700|ref|YP_001226087.1| general secretory pathway protein D [Synechococcus sp. WH 7803] gi|147849239|emb|CAK24790.1| General secretory pathway protein D [Synechococcus sp. WH 7803] Length = 773 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 344 NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKD-DIQQLKEGIPLLSKIPILGALFRNS 401 N G++ R DT + + G T++L G++ D D+Q + + P+L IP +G FR+S Sbjct: 671 NCGNINIINSRTLDTGKIRVRDGQTLILTGVISDTDVQAVTK-WPILGDIPFIGQFFRSS 729 Query: 402 RFNREETEIFIAATPFLV 419 +R + E+ I TP ++ Sbjct: 730 SGDRTKNELVILVTPRII 747 >gi|281355619|ref|ZP_06242113.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281318499|gb|EFB02519.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 540 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 7/102 (6%) Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL-PSGGTIVLAGLLKDDIQQLKEGIPLL 388 L++ E S +IG ++ P + +T V++ SG V+ GL K DI + G+PLL Sbjct: 406 LKLHAE-SVSLIGWDSSGEPRLNKSEIETEVQIGNSGKNFVIGGLRKFDIVRGVAGVPLL 464 Query: 389 SKIPILGALFRNSRFNREETEIFIAA-----TPFLVKPVAMR 425 +P+LG LF + ++++I I A TPF P ++ Sbjct: 465 KDLPLLGWLFSTESESTKKSQIVILASAEYSTPFDPVPTEIQ 506 >gi|167032058|ref|YP_001667289.1| general secretion pathway protein D [Pseudomonas putida GB-1] gi|166858546|gb|ABY96953.1| general secretion pathway protein D [Pseudomonas putida GB-1] Length = 584 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 14/147 (9%) Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ F +G T +++ ++ + GV L P + + L I EVS Sbjct: 402 GQEVPFVTGS----VTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIAD 457 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN- 400 A D+ + + R+ T V + G ++L GL+ D++ + +PLL IP LG LFR+ Sbjct: 458 SSAASDVITNK-REIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYLGRLFRSD 516 Query: 401 -SRFNREETEIFIAATPFLVKPVAMRD 426 S+ ++ +FI +P +RD Sbjct: 517 ASKNTKQNLMVFI-------RPRILRD 536 >gi|325529072|gb|EGD06072.1| putative type II secretory pathway [Burkholderia sp. TJI49] Length = 220 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 49/101 (48%) Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +P + + I + V G ++P + R T + G ++++AG D++ K Sbjct: 45 NPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGRSLLIAGFNDDEVHLNKS 104 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G+P LS IP++G LF+ + + E F TP +V +M Sbjct: 105 GVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVSTASM 145 >gi|254412671|ref|ZP_05026444.1| Bacterial type II and III secretion system protein [Microcoleus chthonoplastes PCC 7420] gi|196180406|gb|EDX75397.1| Bacterial type II and III secretion system protein [Microcoleus chthonoplastes PCC 7420] Length = 979 Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 35/57 (61%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + L G T++L+G++++ + +P+L +PILGALFR++ + E+ + TP Sbjct: 887 IRLRDGQTLILSGIIQESDRTTVRKVPILGDLPILGALFRSTERQNQRQEVIVLLTP 943 >gi|284009077|emb|CBA76056.1| general secretion pathway protein D [Arsenophonus nasoniae] Length = 221 Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 5/153 (3%) Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G S GG F G+ L A++ + L+ P + +SGQ+ +G + Sbjct: 74 LGDILSSSGGSF---GIFSGNVLGLALTAVQGDKHSKLLSVPRILTLSGQNVPIVTG-KI 129 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 + + V ++ D G+ L TP VL+ + L ++++ NA D+ + Sbjct: 130 IGQGVDVKNPFQTIERRDVGISLDVTPVVLNGDSVMLTVKSKADSVSNISNATDIV-FNQ 188 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 R DTTV+L +G T+++ GL++ + +P Sbjct: 189 RSIDTTVQLKNGDTLLIGGLIQHNAVNSTSSVP 221 >gi|187736127|ref|YP_001878239.1| type II and III secretion system protein [Akkermansia muciniphila ATCC BAA-835] gi|187426179|gb|ACD05458.1| type II and III secretion system protein [Akkermansia muciniphila ATCC BAA-835] Length = 833 Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 17/136 (12%) Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGG 366 +YG L F P V + + E V+ V D P + R+ V + +G Sbjct: 697 NYGTSL-FVPMVSQ--------EKDAKEEVVMVKTSDNFILQPVFSTRRLTAPVRIATGN 747 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR- 425 T+V+ L K ++ IP+L IP +G LFR+ + I I +V P + Sbjct: 748 TLVIGALKKSTSITYEDKIPVLGDIPWVGRLFRSKGSKEQRKAIIIMVKAEVVDPGGKKL 807 Query: 426 ---DLSRPDDHYSVED 438 D S PDD D Sbjct: 808 YTPDTSIPDDEVPAGD 823 >gi|256829756|ref|YP_003158484.1| type IV pilus secretin PilQ [Desulfomicrobium baculatum DSM 4028] gi|256578932|gb|ACU90068.1| type IV pilus secretin PilQ [Desulfomicrobium baculatum DSM 4028] Length = 693 Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 18/182 (9%) Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 GKF+ E D F+ + L E ++T++ P + ++ A G + Sbjct: 526 GKFLGE----------DLFALDAALQLGEANNLVKTISSPRILTLNNNRAEIQQGTKLAT 575 Query: 296 KTVSSSTGATSVTTHDYGVV-LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 T S S G T T ++ V+ + P + ++ L ++ P D + Sbjct: 576 ATESESGGTT--TEYEEAVLKISVLPQITPDNKLILDLEISDDSP-----KSDGRDIDTK 628 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + T + + TIV+ G+ K IP L +P LG LF+N+ + + E+ I Sbjct: 629 QTKTKMMVSDRETIVIGGVQKTTETSNTNQIPGLGDVPGLGWLFKNTYDAKSKAELLIFI 688 Query: 415 TP 416 P Sbjct: 689 QP 690 >gi|320667142|gb|EFX34105.1| type III secretion system outer membrane pore InvG [Escherichia coli O157:H7 str. LSU-61] Length = 505 Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 244 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 289 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 290 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 347 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P + +I L + E + N D+P T +P G +++ Sbjct: 348 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 407 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 408 IGGYTRDTNTYESRKIPILGSIPFIGKLF 436 >gi|270637582|ref|ZP_06222100.1| competence protein E [Haemophilus influenzae HK1212] gi|270317386|gb|EFA28906.1| competence protein E [Haemophilus influenzae HK1212] Length = 90 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 9 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 68 Query: 417 FLVK 420 ++K Sbjct: 69 HILK 72 >gi|258545349|ref|ZP_05705583.1| type IV pilus secretin PilQ [Cardiobacterium hominis ATCC 15826] gi|258519452|gb|EEV88311.1| type IV pilus secretin PilQ [Cardiobacterium hominis ATCC 15826] Length = 111 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V + +G TIVL G+ K E +PLL IP++G F+ + E+ E+ I TP Sbjct: 34 TNVLVDNGETIVLGGVYKQRQTAKTEKVPLLGDIPVIGNAFKKNTRAFEKNEMLIFVTPR 93 Query: 418 LV 419 +V Sbjct: 94 IV 95 >gi|330883499|gb|EGH17648.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. race 4] Length = 98 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ Sbjct: 12 SGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI 67 >gi|325921916|ref|ZP_08183727.1| HrcC protein [Xanthomonas gardneri ATCC 19865] gi|325547618|gb|EGD18661.1| HrcC protein [Xanthomonas gardneri ATCC 19865] Length = 606 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 6/167 (3%) Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 T + ALE+ + ++ P + + A Q + S A + GV L Sbjct: 443 TRVSALEQTDKAKIVSTPQVATLDNVEAVMDHKQQAFVRV--SGYAAADLYNLSAGVSLR 500 Query: 318 FTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLL 374 P+V+ PG +R+ + + +G N D +P + T + G ++++AG Sbjct: 501 VLPSVV-PGSPNGQMRLDVRIEDGQLGANTVDGIPVITSSEITTQAFVNEGQSLLIAGYA 559 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +D Q +P LSKIP++G LF++ + + + TP +V P Sbjct: 560 QDTDQTDLNKVPGLSKIPLVGNLFKHRQKSGSRLQRLFLLTPHIVSP 606 >gi|15803397|ref|NP_289430.1| type III secretion apparatus protein [Escherichia coli O157:H7 EDL933] gi|15832987|ref|NP_311760.1| EivG [Escherichia coli O157:H7 str. Sakai] gi|168747661|ref|ZP_02772683.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4113] gi|168753799|ref|ZP_02778806.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4401] gi|168759989|ref|ZP_02784996.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4501] gi|168766854|ref|ZP_02791861.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4486] gi|168775738|ref|ZP_02800745.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4196] gi|168778875|ref|ZP_02803882.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4076] gi|168785707|ref|ZP_02810714.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC869] gi|168799994|ref|ZP_02825001.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC508] gi|195936479|ref|ZP_03081861.1| EivG [Escherichia coli O157:H7 str. EC4024] gi|208807740|ref|ZP_03250077.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4206] gi|208812874|ref|ZP_03254203.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4045] gi|208821461|ref|ZP_03261781.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4042] gi|209395847|ref|YP_002272337.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4115] gi|217327396|ref|ZP_03443479.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. TW14588] gi|254794814|ref|YP_003079651.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. TW14359] gi|261226174|ref|ZP_05940455.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256572|ref|ZP_05949105.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. FRIK966] gi|12517375|gb|AAG57989.1|AE005515_11 type III secretion apparatus protein [Escherichia coli O157:H7 str. EDL933] gi|13363205|dbj|BAB37156.1| type III secretion protein EivG [Escherichia coli O157:H7 str. Sakai] gi|187768795|gb|EDU32639.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4196] gi|188017811|gb|EDU55933.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4113] gi|189003611|gb|EDU72597.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4076] gi|189358709|gb|EDU77128.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4401] gi|189363622|gb|EDU82041.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4486] gi|189369391|gb|EDU87807.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4501] gi|189373912|gb|EDU92328.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC869] gi|189377689|gb|EDU96105.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC508] gi|208727541|gb|EDZ77142.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4206] gi|208734151|gb|EDZ82838.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4045] gi|208741584|gb|EDZ89266.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4042] gi|209157247|gb|ACI34680.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4115] gi|217319763|gb|EEC28188.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. TW14588] gi|254594214|gb|ACT73575.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. TW14359] gi|320640504|gb|EFX10043.1| type III secretion system outer membrane pore InvG [Escherichia coli O157:H7 str. G5101] gi|320645751|gb|EFX14736.1| type III secretion system outer membrane pore InvG [Escherichia coli O157:H- str. 493-89] gi|320651051|gb|EFX19491.1| type III secretion system outer membrane pore InvG [Escherichia coli O157:H- str. H 2687] Length = 567 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P + +I L + E + N D+P T +P G +++ Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498 >gi|326423830|ref|NP_760303.2| type IV pilus biogenesis protein PilQ [Vibrio vulnificus CMCP6] gi|319999200|gb|AAO09830.2| Type IV pilus biogenesis protein PilQ [Vibrio vulnificus CMCP6] Length = 594 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 +R + ++ P L + + A G + Y SSS+GAT+V+ + L TP + Sbjct: 436 QRESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVTPQIT 494 Query: 324 SPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 R+ L + P ++ G+ + ++ T V + +G T+VL G+ + I Sbjct: 495 PDNRLVLDLSVTQDRPGEIVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNT 554 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL +P+LGALFR S N + E+ I TP ++ Sbjct: 555 TDKVPLLGDLPLLGALFRRSYENVGKRELLIFVTPKVI 592 >gi|76574829|gb|ABA47303.1| HrcC [Pseudomonas cichorii] Length = 672 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 10/197 (5%) Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 +++ + +FG ++ G DRF + + ALE +A P++ + Q A Sbjct: 324 ARAGSVNFGSSLLTGGSATLSINDFDRFFAD--IQALEGQGVASVIARPSVLTLENQPAV 381 Query: 287 FT-SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIG 342 S ++ T SVT G L P ++ P R L I E + + Sbjct: 382 IDFSRTAYITATGERVANVQSVTA---GTSLQVIPRTIAGAQPSRFQLIIDIEDGQ-LDR 437 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G+ P + T + ++V+ G D+ Q + +PLL +P+LG+LF + R Sbjct: 438 SRDGETPDVKRGTVSTQAVISENRSLVIGGFHVDETGQHHDKVPLLGDLPVLGSLFTSKR 497 Query: 403 FNREETEIFIAATPFLV 419 E TP L+ Sbjct: 498 QEVSRRERLFILTPRLI 514 >gi|37681174|ref|NP_935783.1| type IV pilus (Tfp) assembly protein PilQ [Vibrio vulnificus YJ016] gi|37199925|dbj|BAC95754.1| type IV pilus (Tfp) assembly protein PilQ [Vibrio vulnificus YJ016] Length = 594 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 +R + ++ P L + + A G + Y SSS+GAT+V+ + L TP + Sbjct: 436 QRESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVTPQIT 494 Query: 324 SPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 R+ L + P ++ G+ + ++ T V + +G T+VL G+ + I Sbjct: 495 PDNRLVLDLSVTQDRPGEIVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNT 554 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL +P+LGALFR S N + E+ I TP ++ Sbjct: 555 TDKVPLLGDLPLLGALFRRSYENVGKRELLIFVTPKVI 592 >gi|115360614|ref|YP_777751.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia ambifaria AMMD] gi|115285942|gb|ABI91417.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria AMMD] Length = 561 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHF 318 + AL+ A + A P + ++ A + Q ++G SV+T G+ L Sbjct: 400 ISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRV 456 Query: 319 TPTVLSP-GRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ GR +++ + + + ++P + +T + G +++AG D Sbjct: 457 LPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFIEEGQALLIAGYRAD 516 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G+P LSKIP++GALFR + E +P ++ P Sbjct: 517 SATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 561 >gi|531740|emb|CAA56979.1| xcpQ [Pseudomonas putida] Length = 591 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 9/75 (12%) Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN--SRFNREETEIF 411 R+ T V + G ++L GL+ D++ + +PLL IP LG LFR+ S+ ++ +F Sbjct: 473 REIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYLGRLFRSDASKNTKQNLMVF 532 Query: 412 IAATPFLVKPVAMRD 426 I +P +RD Sbjct: 533 I-------RPRILRD 540 >gi|320656547|gb|EFX24443.1| type III secretion system outer membrane pore InvG [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 567 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P + +I L + E + N D+P T +P G +++ Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498 >gi|320155169|ref|YP_004187548.1| type IV pilus biogenesis protein PilQ [Vibrio vulnificus MO6-24/O] gi|319930481|gb|ADV85345.1| type IV pilus biogenesis protein PilQ [Vibrio vulnificus MO6-24/O] Length = 594 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 +R + ++ P L + + A G + Y SSS+GAT+V+ + L TP + Sbjct: 436 QRESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVTPQIT 494 Query: 324 SPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 R+ L + P ++ G+ + ++ T V + +G T+VL G+ + I Sbjct: 495 PDNRLVLDLSVTQDRPGEIVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNT 554 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL +P+LGALFR S N + E+ I TP ++ Sbjct: 555 TDKVPLLGDLPLLGALFRRSYENVGKRELLIFVTPKVI 592 >gi|291284183|ref|YP_003501001.1| putative type III secretion apparatus protein [Escherichia coli O55:H7 str. CB9615] gi|290764056|gb|ADD58017.1| Putative type III secretion apparatus protein [Escherichia coli O55:H7 str. CB9615] Length = 567 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P + +I L + E + N D+P T +P G +++ Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498 >gi|257453318|ref|ZP_05618617.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R] gi|317059850|ref|ZP_07924335.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R] gi|313685526|gb|EFS22361.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R] Length = 435 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 52/249 (20%), Positives = 99/249 (39%), Gaps = 20/249 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 K+M ++I G+ QV + I ++ +D+ ++GF S +K A G + V Sbjct: 180 KLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEESVGNS 238 Query: 243 GDF--SVKGVLDRFSFET-----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G S ++ +FS T L LE ++ + P++ G F + + Sbjct: 239 GPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITEEVIV 298 Query: 296 KTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PVIGVN 344 S + + G++L P + + L I E+S+ N Sbjct: 299 GEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNHKKDWN 358 Query: 345 AGDMPSYRV-RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 ++ R T + + + I++ GL + + + +P LS IP LG LF++ Sbjct: 359 FNSQGGSKIGRSLSTRIHVKNKEMILIGGLSRFTRRNTENKVPFLSDIPGLGYLFKSESK 418 Query: 404 NREETEIFI 412 ET+++I Sbjct: 419 KDAETDMYI 427 >gi|293416115|ref|ZP_06658755.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B185] gi|291432304|gb|EFF05286.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B185] Length = 567 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P + +I L + E + N D+P T +P G +++ Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498 >gi|331654358|ref|ZP_08355358.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli M718] gi|331047740|gb|EGI19817.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli M718] Length = 567 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P + +I L + E + N D+P T +P G +++ Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498 >gi|170698370|ref|ZP_02889444.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] gi|170136709|gb|EDT04963.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] Length = 589 Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHF 318 + AL+ A + A P + ++ A + Q ++G SV+T G+ L Sbjct: 428 ISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRV 484 Query: 319 TPTVLSP-GRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ GR +++ + + + ++P + +T + G +++AG D Sbjct: 485 LPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFIEEGQALLIAGYRAD 544 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G+P LSKIP++GALFR + E +P ++ P Sbjct: 545 SATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 589 >gi|167575154|ref|ZP_02368028.1| putative bacteriophage-related lipoprotein [Burkholderia oklahomensis C6786] Length = 446 Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust. Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 16/207 (7%) Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRT 271 ++ + TGS++ G+ GD + RF+ + + AL + + Sbjct: 240 YEVANTGSANSAWSIAVRLLSGQLRLSSGDTASDTSAMRFTGPGVDAAISALNADSRFKV 299 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPG 326 ++ P + +SG+ G Q ++ S G+ S+T D G++ PTV+ Sbjct: 300 VSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQDAGLIFDVEPTVMR-D 358 Query: 327 RIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L+++ E+S+ V D P+ R+ T L G +VL GL++D + G Sbjct: 359 VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDATARSGY 418 Query: 386 PLLSKIPILGALFRNSRFNREETEIFI 412 L + F +++ TE+ + Sbjct: 419 SWLP------SFFDGRSSSKQRTEVLL 439 >gi|320662066|gb|EFX29467.1| type III secretion system outer membrane pore InvG [Escherichia coli O55:H7 str. USDA 5905] Length = 567 Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P + +I L + E + N D+P T +P G +++ Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498 >gi|119489367|ref|ZP_01622147.1| general secretion pathway protein D [Lyngbya sp. PCC 8106] gi|119454640|gb|EAW35786.1| general secretion pathway protein D [Lyngbya sp. PCC 8106] Length = 800 Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 35/60 (58%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T++++G++++ + IP L +PILGALFR+S E+ + TP ++ Sbjct: 715 IRLRDGQTLIVSGIIQEQDRVTASKIPFLGDLPILGALFRSSTRETGRAEVVVLVTPMIM 774 >gi|239833241|ref|ZP_04681570.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG 3301] gi|239825508|gb|EEQ97076.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG 3301] Length = 139 Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 2/94 (2%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 +P + A AVI ++ + +++ L P D V++ +P+ AD VV + Sbjct: 14 VPAMGAAFMAVIAVAQASAEDYIALETSQARILRLARPAD--SVVIGNPSIADAVVQDAQ 71 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 T+ L GK+ G N++++ G+ +L+ ++++ R+ Sbjct: 72 TIVLTGKDFGVTNIVVMDKQGEPILDRELVVSRN 105 >gi|319795612|ref|YP_004157252.1| type III secretion outer membrane pore, yscc/hrcc family [Variovorax paradoxus EPS] gi|315598075|gb|ADU39141.1| type III secretion outer membrane pore, YscC/HrcC family [Variovorax paradoxus EPS] Length = 613 Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 4/112 (3%) Query: 313 GVVLHFTPTVLSP--GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIV 369 G + TP ++ GR G+ + ++ + + A D +P R R +T + G +++ Sbjct: 478 GTAVRVTPLIIDEKTGR-GVMMSIDIVDGDVSTQAVDRIPIVRRRSVNTQALVDEGASLL 536 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +AG ++ G+PLL +P +G LF+ S + E F TP LV P Sbjct: 537 IAGYSSEERANAVTGVPLLKDLPGVGNLFKYSDKKQVNMERFYLLTPRLVSP 588 >gi|188534044|ref|YP_001907841.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] gi|188029086|emb|CAO96954.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] Length = 592 Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust. Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 27/216 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--D 252 Q+ L + I ++ + + ++G + S GK + G F+ + + Sbjct: 333 QIQLSLWIIDISKKEINELGVKWS---------------GAGKVNNTGVTFNTSSLTPEN 377 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F + AL ++ + + ++ P + A F + K + T + T Y Sbjct: 378 SIHFLADVSALVKSGSAQVISRPEILTQENVPALFDNNSSFYAKLIGERTSSLEKIT--Y 435 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-------GDMPSYRVRKADTTVELPSG 365 G ++ P L+ G+ + + + + + +NA MP+ + T +P G Sbjct: 436 GTMISVLPR-LATGQQEIEMILNIHDGTVPLNAQGEPDKFDSMPTTSNTQISTEARVPLG 494 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 ++++ G +D +Q G+PLL IP LG +F S Sbjct: 495 HSLLVGGYSRDQDEQHNIGVPLLRDIPYLGRIFNYS 530 >gi|207857100|ref|YP_002243751.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708903|emb|CAR33233.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 497 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + + + V I +V + Q+G S G K A + G +++GG V+ Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310 D +F L+ALE+++ L++P++ ++ A K S+TT Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G +L TP +L+ +I L + + + + D +P + + + L +G Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++L G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486 >gi|224437102|ref|ZP_03658083.1| hypothetical protein HcinC1_04000 [Helicobacter cinaedi CCUG 18818] Length = 602 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 39/202 (19%), Positives = 81/202 (40%), Gaps = 31/202 (15%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG---------- 291 GDF++ S ++ L+ +++++ P + ++ Q A + G Sbjct: 310 NGDFAISIFSQGVSINRIVEFLQTYGKVQSVSNPKVLTLNNQPAIISVGSVLRYFQNTTY 369 Query: 292 ---------QHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 Q+L +T S + + + ++L P++ I + QT E Sbjct: 370 QTTTQGTSIQNLSQTFPSVFAGILLDVTPSVKNDKIILKINPSITKTKDISIENQTTALE 429 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P+ ++ + V++ G IVL GL+ Q+ +P+L IP++ LF Sbjct: 430 --------SPPNLSTKQLSSLVQVKDGEKIVLGGLIDKTEGQILRKLPILGDIPLIKYLF 481 Query: 399 RNSRFNREETEIFIAATPFLVK 420 + +E E+ I +P +V+ Sbjct: 482 SYKKNIKETQEMVIIISPHIVR 503 >gi|331664433|ref|ZP_08365339.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli TA143] gi|331058364|gb|EGI30345.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli TA143] Length = 567 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P + +I L + E + N D+P T +P G +++ Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498 >gi|294665979|ref|ZP_06731242.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604227|gb|EFF47615.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 607 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%) Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + TI E+R ++ +G QH+ TG G F G ++G V G Sbjct: 371 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVGG 429 Query: 250 VL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 L R+ T + ALE + ++ P + + A Q + S Sbjct: 430 TLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359 + + GV L P+V+ PG +R+ + + +G N D +P + T Sbjct: 487 ASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQ 545 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 605 Query: 420 KP 421 P Sbjct: 606 SP 607 >gi|159024044|gb|ABW87272.1| HrcC [Xanthomonas fuscans subsp. fuscans] Length = 607 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%) Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + TI E+R ++ +G QH+ TG G F G ++G V G Sbjct: 371 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVGG 429 Query: 250 VL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 L R+ T + ALE + ++ P + + A Q + S Sbjct: 430 TLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359 + + GV L P+V+ PG +R+ + + +G N D +P + T Sbjct: 487 ASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQ 545 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 605 Query: 420 KP 421 P Sbjct: 606 SP 607 >gi|313143572|ref|ZP_07805765.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128603|gb|EFR46220.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 605 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 39/202 (19%), Positives = 81/202 (40%), Gaps = 31/202 (15%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG---------- 291 GDF++ S ++ L+ +++++ P + ++ Q A + G Sbjct: 313 NGDFAISIFSQGVSINRIVEFLQTYGKVQSVSNPKVLTLNNQPAIISVGSVLRYFQNTTY 372 Query: 292 ---------QHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 Q+L +T S + + + ++L P++ I + QT E Sbjct: 373 QTTTQGTSIQNLSQTFPSVFAGILLDVTPSVKNDKIILKINPSITKTKDISIENQTTALE 432 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P+ ++ + V++ G IVL GL+ Q+ +P+L IP++ LF Sbjct: 433 --------SPPNLSTKQLSSLVQVKDGEKIVLGGLIDKTEGQILRKLPILGDIPLIKYLF 484 Query: 399 RNSRFNREETEIFIAATPFLVK 420 + +E E+ I +P +V+ Sbjct: 485 SYKKNIKETQEMVIIISPHIVR 506 >gi|172064938|ref|YP_001815650.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia ambifaria MC40-6] gi|171997180|gb|ACB68097.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MC40-6] Length = 589 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 6/165 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHF 318 + AL+ A + A P + ++ A + Q ++G SV+T G+ L Sbjct: 428 ISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRV 484 Query: 319 TPTVLSP-GRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V+ GR +++ + + + ++P + +T + G +++AG D Sbjct: 485 LPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFIEEGQALLIAGYRAD 544 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G+P LSKIP++GALFR + E +P ++ P Sbjct: 545 TATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 589 >gi|161614190|ref|YP_001588155.1| hypothetical protein SPAB_01932 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363554|gb|ABX67322.1| hypothetical protein SPAB_01932 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 497 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + + + V I +V + Q+G S G K A + G +++GG V+ Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310 D +F L+ALE+++ L++P++ ++ A K S+TT Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G +L TP +L+ +I L + + + + D +P + + + L +G Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++L G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486 >gi|86605695|ref|YP_474458.1| type IV pilus secretin PilQ [Synechococcus sp. JA-3-3Ab] gi|86554237|gb|ABC99195.1| putative type IV pilus secretin PilQ [Synechococcus sp. JA-3-3Ab] Length = 723 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 35/54 (64%) Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+ L GL++++ + + +PLLS+IP+LG+LFR +E+ + TP +++ Sbjct: 669 TLFLGGLIQEEDRVSVDKVPLLSEIPLLGSLFRRQNTTNTRSEVVVLITPVILE 722 >gi|186976189|gb|ACD01071.1| EivG [Escherichia coli O157:H7 str. EC10] Length = 567 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P + +I L + E + N D+P T +P G +++ Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTFISTIARVPQGKSLL 469 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498 >gi|301027449|ref|ZP_07190786.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 69-1] gi|300394957|gb|EFJ78495.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 69-1] Length = 567 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P + +I L + E + N D+P T +P G +++ Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGKLF 498 >gi|197247911|ref|YP_002146647.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211614|gb|ACH49011.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 497 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + + + V I +V + Q+G S G K A + G +++GG V+ Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310 D +F L+ALE+++ L++P++ ++ A K S+TT Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G +L TP +L+ +I L + + + + D +P + + + L +G Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++L G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486 >gi|167551637|ref|ZP_02345391.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168263775|ref|ZP_02685748.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463196|ref|ZP_02697127.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194442462|ref|YP_002040647.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|198244927|ref|YP_002215736.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|194401125|gb|ACF61347.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195633943|gb|EDX52295.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197939443|gb|ACH76776.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205323577|gb|EDZ11416.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205347635|gb|EDZ34266.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|326623484|gb|EGE29829.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 497 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + + + V I +V + Q+G S G K A + G +++GG V+ Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310 D +F L+ALE+++ L++P++ ++ A K S+TT Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G +L TP +L+ +I L + + + + D +P + + + L +G Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++L G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486 >gi|328545283|ref|YP_004305392.1| Possible pilus assembly protein (CpaC) [polymorphum gilvum SL003B-26A1] gi|326415025|gb|ADZ72088.1| Possible pilus assembly protein (CpaC) [Polymorphum gilvum SL003B-26A1] Length = 157 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 17/135 (12%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ KV ++ P D V+V +P+ ADV +H T+ + GK G N++++ D + + Sbjct: 33 VTVDRAKVFRIEAPADT--VIVGNPSIADVTMHDRFTVVVTGKTFGTTNLVILDKDSQPI 90 Query: 110 LNLDILI---ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 ++ I++ E D+ + L R+ S + VR + D++ A EL T Sbjct: 91 IDEVIVVRPPETDVVTVTRNLNRY---------SYSCSPTCEPTVR-VGDAKDAFEL--T 138 Query: 167 FLSQSGRNQYANSSS 181 + RN+ A S++ Sbjct: 139 VNQAAARNEMAVSAA 153 >gi|16764744|ref|NP_460359.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|1498307|gb|AAC44301.1| SpiA [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419915|gb|AAL20318.1| secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261246600|emb|CBG24410.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993282|gb|ACY88167.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157929|emb|CBW17424.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912379|dbj|BAJ36353.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224019|gb|EFX49082.1| Secretion system apparatus SsaC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129666|gb|ADX17096.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988281|gb|AEF07264.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 497 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + + + V I +V + Q+G S G K A + G +++GG V+ Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310 D +F L+ALE+++ L++P++ ++ A K S+TT Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G +L TP +L+ +I L + + + + D +P + + + L +G Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++L G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486 >gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62] gi|254547834|gb|ACT57211.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62] Length = 135 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 7/74 (9%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGK 107 +I I + + +ILQ V + V+V D DV+ + +T+ + GKN+G N+I++GH Sbjct: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH--- 90 Query: 108 QMLNLDILIERDIA 121 N DIL++ +IA Sbjct: 91 ---NNDILLDTEIA 101 >gi|294625827|ref|ZP_06704443.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599855|gb|EFF43976.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 607 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%) Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + TI E+R ++ +G QH+ TG G F G ++G V G Sbjct: 371 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVGG 429 Query: 250 VL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 L R+ T + ALE + ++ P + + A Q + S Sbjct: 430 TLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359 + + GV L P+V+ PG +R+ + + +G N D +P + T Sbjct: 487 ASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQ 545 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 605 Query: 420 KP 421 P Sbjct: 606 SP 607 >gi|197264837|ref|ZP_03164911.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243092|gb|EDY25712.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 497 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + + + V I +V + Q+G S G K A + G +++GG V+ Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310 D +F L+ALE+++ L++P++ ++ A K S+TT Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G +L TP +L+ +I L + + + + D +P + + + L +G Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++L G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486 >gi|168233588|ref|ZP_02658646.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239278|ref|ZP_02664336.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194471885|ref|ZP_03077869.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734057|ref|YP_002114408.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204927561|ref|ZP_03218762.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194458249|gb|EDX47088.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709559|gb|ACF88780.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288005|gb|EDY27392.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322903|gb|EDZ08099.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205332374|gb|EDZ19138.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 497 Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + + + V I +V + Q+G S G K A + G +++GG V+ Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310 D +F L+ALE+++ L++P++ ++ A K S+TT Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G +L TP +L+ +I L + + + + D +P + + + L +G Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++L G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486 >gi|300936194|ref|ZP_07151130.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 21-1] gi|300458651|gb|EFK22144.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 21-1] Length = 567 Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + L + I ++ + L+Q+G S T GSS +A F + G S L Sbjct: 306 HIELSLWIIDIDKTDLEQLGADWSGTIKIGSS------LSASF-----NNSGSIST---L 351 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F + AL + +A P + A F + K V T T Sbjct: 352 DGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAELDEVT-- 409 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 YG ++ P + +I L + E + N D+P T +P G +++ Sbjct: 410 YGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLL 469 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G +D IP+L IP +G LF Sbjct: 470 IGGYTRDTNTYESRKIPILGSIPFIGILF 498 >gi|56413635|ref|YP_150710.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362559|ref|YP_002142196.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127892|gb|AAV77398.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094036|emb|CAR59532.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 497 Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + + + V I +V + Q+G S G K A + G +++GG V+ Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310 D +F L+ALE+++ L++P++ ++ A K S+TT Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G +L TP +L+ +I L + + + + D +P + + + L +G Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++L G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486 >gi|83645990|ref|YP_434425.1| putative type III secretion protein YscC [Hahella chejuensis KCTC 2396] gi|83634033|gb|ABC30000.1| putative type III secretion protein YscC [Hahella chejuensis KCTC 2396] Length = 573 Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust. Identities = 56/242 (23%), Positives = 96/242 (39%), Gaps = 27/242 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGK-----------FVSEG 242 QV ++V+I +V D L ++GF+ I G + SF ADF V +G Sbjct: 311 QVEIEVSIIDVSTDRLNEMGFEWRINGRNG----SFTNADFSQGALPRSPNELSFVVGDG 366 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 +FS + F + + AL L++PT+ + A + V Sbjct: 367 ANFSTLLTNTQDLFLSRIRALSEDGDASVLSQPTILTLDNIEAVLDHSTTFFVRLVGDR- 425 Query: 303 GATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + G V+ TP ++ +I L I E + G D+P+ T Sbjct: 426 -EVDLFPVSVGSVVRVTPHIVKGDLSDKIHLNINIEDGQQT-GQAVDDIPAVSKSIITTE 483 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G++++ G + + IP+L IP+LG LFR + +++ A FL+ Sbjct: 484 ALVNDNGSLLVGGYYFNQDSTNRSKIPVLGDIPLLGRLFRT-----DGSQLQKRARLFLI 538 Query: 420 KP 421 P Sbjct: 539 SP 540 >gi|62287139|sp|Q9ZHF3|PILQ_NEIME RecName: Full=Type IV pilus biogenesis and competence protein pilQ; Flags: Precursor gi|4027986|gb|AAC96097.1| secretin precursor [Neisseria meningitidis H44/76] Length = 766 Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 3/149 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + S S G +S T VL T Sbjct: 604 LSASESLSKPKTLANPRVLTQNRKEAKIESGYEIPFTVTSRSGGGSSTNTELKKAVLGLT 663 Query: 320 --PTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + G+I + ++ P + + + +T + +GGT+++ G+ ++ Sbjct: 664 VTPNITPDGQIIMTVKINKDSPRQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEE 723 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNR 405 D +PLL+ P+ ++ NR Sbjct: 724 DNGNTLTKVPLLATSPLSATSLKHGEKNR 752 >gi|188574359|ref|YP_001911288.1| HrpA type III secretion outer membrane pore, YscC/HrcC family [Xanthomonas oryzae pv. oryzae PXO99A] gi|188518811|gb|ACD56756.1| HrpA type III secretion outer membrane pore, YscC/HrcC family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 591 Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust. Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 23/244 (9%) Query: 196 VTLKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 + + TI E+R ++ +G QH+ TG G F G ++G V Sbjct: 353 LQIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPV 411 Query: 248 KGVL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G L R+ T + ALE + ++ P + + A Q + S Sbjct: 412 GGTLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--S 468 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKAD 357 + + GV L P+V+ PG +R+ + + +G N D +P + Sbjct: 469 GYASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEIK 527 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + G ++++AG D + +P LSKIP+LG LF++ + + + TP Sbjct: 528 TQAFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPH 587 Query: 418 LVKP 421 +V P Sbjct: 588 VVSP 591 >gi|114568966|ref|YP_755646.1| hypothetical protein Mmar10_0415 [Maricaulis maris MCS10] gi|114339428|gb|ABI64708.1| conserved hypothetical protein [Maricaulis maris MCS10] Length = 152 Score = 41.6 bits (96), Expect = 0.31, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 46/89 (51%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A A + I V +++ + ++++P + ++V +P+ AD +VH RT+ + G Sbjct: 6 ATAFTLAIVCVAPAAAHDLAVPVEHAEVIRLPAEASAIVVGNPSIADALVHDGRTLVVTG 65 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDI 120 + G+ NVI + G+ + DI++ + Sbjct: 66 RLQGRTNVIALDRVGRVIYERDIVVSNPV 94 >gi|322615120|gb|EFY12043.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619963|gb|EFY16836.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622274|gb|EFY19119.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627796|gb|EFY24586.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632859|gb|EFY29603.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636650|gb|EFY33353.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641157|gb|EFY37799.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644908|gb|EFY41441.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650255|gb|EFY46669.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655829|gb|EFY52131.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660154|gb|EFY56393.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665279|gb|EFY61467.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669536|gb|EFY65684.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673462|gb|EFY69564.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677390|gb|EFY73454.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679947|gb|EFY75986.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687419|gb|EFY83391.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193477|gb|EFZ78684.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198609|gb|EFZ83710.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323208655|gb|EFZ93593.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211192|gb|EFZ96039.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217632|gb|EGA02347.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218980|gb|EGA03490.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223665|gb|EGA07975.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229434|gb|EGA13557.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232657|gb|EGA16753.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240305|gb|EGA24349.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242706|gb|EGA26727.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245918|gb|EGA29906.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252482|gb|EGA36329.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255189|gb|EGA38968.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260064|gb|EGA43689.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267172|gb|EGA50657.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271505|gb|EGA54926.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 497 Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + + + V I +V + Q+G S G K A + G +++GG V+ Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310 D +F L+ALE+++ L++P++ ++ A K S+TT Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G +L TP +L+ +I L + + + + D +P + + + L +G Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++L G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486 >gi|323530312|ref|YP_004232464.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. CCGE1001] gi|323387314|gb|ADX59404.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. CCGE1001] Length = 610 Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLH 317 ++AL+++ + A P + ++ A + + VS T A SV+T GV L Sbjct: 449 VNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVR-VSGYTSADLYSVST---GVSLR 504 Query: 318 FTPTVLSP-GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLK 375 P V+ GR +++ + + I D +P +T + G ++++AG Sbjct: 505 VLPLVVEENGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESFVGQGESLLIAGYRV 564 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 D + G+P LSKIP++GALFR R E +P +++ Sbjct: 565 DTSTNGETGVPGLSKIPLIGALFRYRDDQRSHMERLFLLSPRIIE 609 >gi|213649903|ref|ZP_03379956.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 109 Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%) Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T +P G ++++ G +D + IP+L K+P++G+LFR S N+ F Sbjct: 4 TIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN-----VVRVF 58 Query: 418 LVKPVAMRDLSRPDDHYSVED 438 +++P + D PD SV + Sbjct: 59 MIEPKEIVDPLTPDASESVNN 79 >gi|62179985|ref|YP_216402.1| secretion system apparatus SsaC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168240906|ref|ZP_02665838.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448307|ref|YP_002045398.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200390529|ref|ZP_03217140.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|224584095|ref|YP_002637893.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62127618|gb|AAX65321.1| Secretion system apparatus SsaC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194406611|gb|ACF66830.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199602974|gb|EDZ01520.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205339640|gb|EDZ26404.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224468622|gb|ACN46452.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714452|gb|EFZ06023.1| secretion system apparatus SsaC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 497 Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + + + V I +V + Q+G S G K A + G +++GG V+ Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310 D +F L+ALE+++ L++P++ ++ A K S+TT Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G +L TP +L+ +I L + + + + D +P + + + L +G Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++L G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486 >gi|16760517|ref|NP_456134.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141723|ref|NP_805065.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|168822263|ref|ZP_02834263.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|213051564|ref|ZP_03344442.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428550|ref|ZP_03361300.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213647233|ref|ZP_03377286.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854968|ref|ZP_03383208.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238913201|ref|ZP_04657038.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|25511812|pir||AB0700 probable outer membrane secretory protein spiA [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502813|emb|CAD01971.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137351|gb|AAO68914.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|205341330|gb|EDZ28094.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086125|emb|CBY95899.1| Yop proteins translocation protein C Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 497 Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + + + V I +V + Q+G S G K A + G +++GG V+ Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310 D +F L+ALE+++ L++P++ ++ A K S+TT Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G +L TP +L+ +I L + + + + D +P + + + L +G Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++L G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486 >gi|149917610|ref|ZP_01906107.1| type II and III secretion system protein [Plesiocystis pacifica SIR-1] gi|149821673|gb|EDM81071.1| type II and III secretion system protein [Plesiocystis pacifica SIR-1] Length = 777 Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 23/182 (12%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG------GQHLYKTVSSSTGAT--- 305 +F V+ AL+ + +AEP + + A G G + T T Sbjct: 498 AFGVVIQALQSNDDVNIVAEPHIYTADNKEAQIEVGRKVPTPGALQFGGAGGGTSLTPLQ 557 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKADTTV 360 S+ D + + TP V + L I+ E +PV+GV R++ + Sbjct: 558 SINREDVTLDIKVTPHVKDETSLTLDIELEDRDVVDQDPVLGVTT---TKRRIKLENVLA 614 Query: 361 --ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +LP +VL GL+++ + + +P L IPILG LF+ +E+ + I P + Sbjct: 615 RDDLP----VVLGGLMRERELENTQQVPGLGSIPILGWLFKRRVKQKEKINLLIVLIPHV 670 Query: 419 VK 420 V+ Sbjct: 671 VE 672 >gi|154250684|ref|YP_001411508.1| hypothetical protein Plav_0228 [Parvibaculum lavamentivorans DS-1] gi|154154634|gb|ABS61851.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1] Length = 172 Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 36/61 (59%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 +NK L + V+V +P+ ADV V + +Y+ G++ G+ N+I + G+ +L+++ Sbjct: 40 MNKSKALHLGQPASTVMVGNPSIADVTVEGSKLLYVMGRSYGRTNIIALDSSGETILDIN 99 Query: 114 I 114 + Sbjct: 100 V 100 >gi|120609177|ref|YP_968855.1| YscC/HrcC family type III secretion outer membrane protein [Acidovorax citrulli AAC00-1] gi|58700619|gb|AAW81010.1| HrcC [Acidovorax citrulli] gi|120587641|gb|ABM31081.1| type III secretion outer membrane pore, YscC/HrcC family [Acidovorax citrulli AAC00-1] Length = 683 Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust. Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 35/232 (15%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSI-TGSSS------GPSKSFAADFGGKFVSEGGDFSVK 248 V L+ TI EV D + +G S+ G+SS GPS A V + G + Sbjct: 448 VELEATIIEVNSDSVDALGVNWSLRAGTSSISTNLPGPSTPAALS---TIVLDAGRHLLA 504 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 V +ALE R L++P++ ++ ++A K V++ A ++ Sbjct: 505 NV----------NALEAQGKARILSKPSVLGVANRAAVMRE------KRVATVRVAGNLE 548 Query: 309 TH----DYGVVLHFTPTVLSP--GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVE 361 + + G +L TP V +P G+ +++ + + N D +P + + T Sbjct: 549 ANLFQIEAGTLLQMTPQV-TPVDGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAH 607 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS-RFNREETEIFI 412 + G ++++ G+ + +P LSK+P++G +FRN+ R R +F+ Sbjct: 608 VREGESLLIGGITVESENTQDNAVPGLSKLPVVGGVFRNTERLTRRTERLFL 659 >gi|323202935|gb|EFZ87970.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 429 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + + + V I +V + Q+G S G K A + G +++GG V+ Sbjct: 198 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 252 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310 D +F L+ALE+++ L++P++ ++ A K S+TT Sbjct: 253 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 311 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G +L TP +L+ +I L + + + + D +P + + + L +G Sbjct: 312 --GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 369 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++L G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 370 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 418 >gi|307725648|ref|YP_003908861.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. CCGE1003] gi|307586173|gb|ADN59570.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. CCGE1003] Length = 610 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLH 317 ++AL+++ + A P + ++ A + + VS T A SV+T GV L Sbjct: 449 VNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVR-VSGYTSADLYSVST---GVSLR 504 Query: 318 FTPTVLSP-GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLK 375 P V+ GR +++ + + I D +P +T + G ++++AG Sbjct: 505 VLPLVVEENGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESFVGQGESLLIAGYRV 564 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 D + G+P LSKIP++GALFR R E +P +++ Sbjct: 565 DTSTNGETGVPGLSKIPLIGALFRYRDDQRSHMERLFLLSPRIIE 609 >gi|260899863|ref|ZP_05908258.1| protein VcsC2 [Vibrio parahaemolyticus AQ4037] gi|308107338|gb|EFO44878.1| protein VcsC2 [Vibrio parahaemolyticus AQ4037] Length = 488 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 P + ++ V + G TI+L G QQ + GIP+LS IP+LG LF+++ Sbjct: 417 PRVSSQSLNSEVYIKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKST 469 >gi|329890282|ref|ZP_08268625.1| general secretion pathway protein D [Brevundimonas diminuta ATCC 11568] gi|328845583|gb|EGF95147.1| general secretion pathway protein D [Brevundimonas diminuta ATCC 11568] Length = 698 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 14/193 (7%) Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +I TL T + GQ T+G L +S T+ D GV L P + + G Sbjct: 474 SIMTLDNEEATFLVGQEVPITTGQTILD---GNSNPFTTTERKDIGVRLTVRPQINAGGS 530 Query: 328 IGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L ++ EVS ++ A D+ + R+ +TT+ + G V GLL + + Sbjct: 531 ITLTLRQEVSSINGLLTSGANDLILDK-RELETTLVVDDGDIAVAGGLLDQNDGLETSKV 589 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P L IP +G LFR++ R T + + P +++ A D + D + Sbjct: 590 PGLGDIPGVGVLFRSTSRERGRTNLMVFLRPTILRTTA--------DAQGLAADRWGYMR 641 Query: 446 NRVNKIYGPKEAS 458 +++ +E S Sbjct: 642 GEQQRVHPDREPS 654 >gi|58579717|ref|YP_198733.1| hypothetical protein XOO0094 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84621739|ref|YP_449111.1| HrcC protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|7350909|gb|AAC95122.2| HrpA [Xanthomonas oryzae pv. oryzae] gi|9711580|dbj|BAB07849.1| HrpA [Xanthomonas oryzae pv. oryzae] gi|24251284|gb|AAN46403.1| HrcC [Xanthomonas oryzae pv. oryzae] gi|50428343|dbj|BAD29980.1| HrcC [Xanthomonas oryzae pv. oryzae] gi|58424311|gb|AAW73348.1| HrcC protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365679|dbj|BAE66837.1| HrcC protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|118076671|gb|ABK60047.1| HrcC [Xanthomonas oryzae pv. oryzae] Length = 605 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%) Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + TI E+R ++ +G QH+ TG G F G ++G V G Sbjct: 369 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPVGG 427 Query: 250 VL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 L R+ T + ALE + ++ P + + A Q + S Sbjct: 428 TLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 484 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359 + + GV L P+V+ PG +R+ + + +G N D +P + T Sbjct: 485 ASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEIKTQ 543 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 544 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 603 Query: 420 KP 421 P Sbjct: 604 SP 605 >gi|302879515|ref|YP_003848079.1| type II and III secretion system protein [Gallionella capsiferriformans ES-2] gi|302582304|gb|ADL56315.1| type II and III secretion system protein [Gallionella capsiferriformans ES-2] Length = 599 Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust. Identities = 57/278 (20%), Positives = 106/278 (38%), Gaps = 37/278 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 KVMN QV L+ TI EV Q G S+ + G S + + G Sbjct: 306 KVMN----NARRQVLLEATIVEVTLSDQYQQGIDWSLL-RTLGLSLTQVSPVGALTAMGT 360 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 ++ G FS + LE + L+ P L+ ++ Q+ + +Y T+ + Sbjct: 361 ISYTNPGKPGSFSLSGSIKLLETFGKLHVLSSPKLSVLNNQTGLVKVVDESVYFTIEVTQ 420 Query: 303 GA--------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------- 338 G +++ T G +++ TP + + L ++ ++ Sbjct: 421 GTYGANNTVLTLPTYTSTIHTVPVGFMMYVTPQIGGDTEVTLNLRPTITRILSYAKDPNP 480 Query: 339 -------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 P + V +P + R+ ++ + + +G VL GL++D IP L + Sbjct: 481 ALINTITPALSV-TNLIPQIQTREMESIMRVRNGDIAVLGGLMQDTRAGDTNQIPGLGSV 539 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 P LG LF+ ++E+ + P ++ DL R Sbjct: 540 PGLGQLFKARTDKNTKSELVVFLRPVILNQETQYDLVR 577 >gi|161503511|ref|YP_001570623.1| hypothetical protein SARI_01587 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864858|gb|ABX21481.1| hypothetical protein SARI_01587 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 484 Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust. Identities = 53/234 (22%), Positives = 97/234 (41%), Gaps = 19/234 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + + + V I +V + Q+G S G +F + G + FS + D Sbjct: 253 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNS---GPNEGDTNGFSTV-ISD 308 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTHD 311 +F L+ALE+++ L++P++ ++ A K S+TT Sbjct: 309 TSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT-- 366 Query: 312 YGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 G +L TP +L+ + L IQ + + +P + + + L +G Sbjct: 367 -GSLLRVTPRLLNDNGTQKIMLNLNIQ-DGQQSDTQSETNPLPEVQNSEIASQATLLAGQ 424 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++L G + + + IPLL IP+LG LFRN + T++ FL+K Sbjct: 425 SLLLGGFKQGKQIRSQNKIPLLGDIPVLGHLFRN-----DTTQVHSVIRLFLIK 473 >gi|71905856|ref|YP_283443.1| type II and III secretion system secretin [Dechloromonas aromatica RCB] gi|71845477|gb|AAZ44973.1| type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal [Dechloromonas aromatica RCB] Length = 715 Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 8/110 (7%) Query: 316 LHFTPTVLSPG--RIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLA 371 L TP + G R+ L ++ E ++ V N P + +T V + +GGT+V+ Sbjct: 601 LEVTPQITPEGTVRMNLVVKKEEADWTKAVVLNGYANPPIKSSVVETNVVVENGGTVVIG 660 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIAATPFLV 419 G+ D Q E +PLL IP G LF +N R E +FI TP ++ Sbjct: 661 GVFITDTQNSVEKVPLLGDIPFFGWLFKYKNDIGKRRELLVFI--TPRVI 708 >gi|289804850|ref|ZP_06535479.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 230 Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust. Identities = 52/238 (21%), Positives = 100/238 (42%), Gaps = 33/238 (13%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-DRF 254 + + V I +V + Q+G S G +F ++GG V+ D Sbjct: 2 IEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGL-----NDGGASGFSTVISDTS 56 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG--------GQHLYKTVSSSTGATS 306 +F L+ALE+++ L++P++ ++ A G+ + K S +TG+ Sbjct: 57 NFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITTGS-- 114 Query: 307 VTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVEL 362 +L TP +L+ +I L + + + + D +P + + + L Sbjct: 115 --------LLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATL 166 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +G +++L G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 167 LAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 219 >gi|7416860|dbj|BAA94087.1| hypersensitive response secretion protein [Xanthomonas oryzae pv. oryzae] Length = 605 Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust. Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%) Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + TI E+R ++ +G QH+ TG G F G ++G V G Sbjct: 369 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPVGG 427 Query: 250 VL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 L R+ T + ALE + ++ P + + A Q + S Sbjct: 428 TLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 484 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359 + + GV L P+V+ PG +R+ + + +G N D +P + T Sbjct: 485 ASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEIKTQ 543 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 544 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 603 Query: 420 KP 421 P Sbjct: 604 SP 605 >gi|319785612|ref|YP_004145088.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171500|gb|ADV15038.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 140 Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 G G ++++ K++ L P D ++V +P AD V T+ L GK G N++++ Sbjct: 26 GAGIEVTMNQAKIVKLSRPADT--IVVGNPAIADASVQDASTIVLTGKGFGVTNLVVLDT 83 Query: 105 DGKQMLNLDILIERDIAHLEMTLRR 129 DG +++ + + R A RR Sbjct: 84 DGSPIVDEQVTVVRQAASSVRIYRR 108 >gi|253990944|ref|YP_003042300.1| type III secretion system EscC protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782394|emb|CAQ85558.1| Putative type III secretion system EscC protein [Photorhabdus asymbiotica] Length = 491 Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 35/51 (68%), Gaps = 4/51 (7%) Query: 367 TIVLAGLLKDDIQQL--KEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 TI+L G D+I+ L + G+P+LS IP+LG +F+N++ + + + +IA + Sbjct: 438 TIILGGF--DNIETLSSESGVPVLSSIPLLGEIFKNTKLTKRKYKRYIAVS 486 >gi|205352890|ref|YP_002226691.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272671|emb|CAR37581.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|309243418|gb|ADO51994.1| SsaC [Salmonella enterica subsp. enterica serovar Gallinarum] gi|326627962|gb|EGE34305.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 497 Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + + + V I +V + Q+G S G K A + G +++GG V+ Sbjct: 266 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG--KKIAFNTG---LNDGGASGFSTVIS 320 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTH 310 D +F L+ALE+++ L++P++ ++ A K S+TT Sbjct: 321 DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT- 379 Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G +L TP +L+ +I L + + + + D +P + + + L +G Sbjct: 380 --GSLLRVTPRLLNDNGTQKIMLDLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQ 437 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++L G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 438 SLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 486 >gi|167573168|ref|ZP_02366042.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia oklahomensis C6786] Length = 577 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 10/167 (5%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLH 317 ++AL+ + ++ A P L A S + + VS T A S+ T GV L Sbjct: 414 VNALQSTSKVKIDASP-LVATLDNSEAVMDNMTRFFVRVSGYTSADLYSIAT---GVSLR 469 Query: 318 FTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 P ++ G RI L + + + G +P + +T + G ++++AG Sbjct: 470 VLPLIVQDGSETRIKLNVHVTDGQ-LTGDLVDSIPVVTSSEINTQAFVGQGESLLIAGYS 528 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P LSKIP++GALFR + E +P ++ P Sbjct: 529 TDKRSNGVTGVPWLSKIPLIGALFRYNSDEHSHMERVFLLSPRIIDP 575 >gi|223993111|ref|XP_002286239.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977554|gb|EED95880.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 4031 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 14/122 (11%) Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGED-----QVTLKVTIAEVRRDILKQIGFQH 217 LSET+L+ G N + SK + + + E+ Q V EVRR+I G+Q Sbjct: 1413 LSETYLNDDGDNIPVYARSKSMSIAFDASAEEVQNALQQMPNVNHVEVRREIDNVDGYQW 1472 Query: 218 SITG-SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 +T S+ GP SF D+ + FSV +VL L + A T+A+PT Sbjct: 1473 FVTFVSNEGPQPSFTVDYSHLVGANTAGFSVT--------RSVLGVLPESYASFTIADPT 1524 Query: 277 LT 278 ++ Sbjct: 1525 VS 1526 >gi|153008055|ref|YP_001369270.1| hypothetical protein Oant_0719 [Ochrobactrum anthropi ATCC 49188] gi|151559943|gb|ABS13441.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188] Length = 139 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 43/70 (61%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I++ ++ IL++ V++ +P+ AD VV +T+ L GK+ G N++++ G+ + Sbjct: 36 IALETSQARILRLARPADSVVIGNPSIADAVVQDAQTIVLTGKDFGVTNIVVMDKQGEPI 95 Query: 110 LNLDILIERD 119 L+ ++++ R+ Sbjct: 96 LDRELVVSRN 105 >gi|302877484|ref|YP_003846048.1| type II and III secretion system protein [Gallionella capsiferriformans ES-2] gi|302580273|gb|ADL54284.1| type II and III secretion system protein [Gallionella capsiferriformans ES-2] Length = 573 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 22/158 (13%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---------KTVSSSTGAT 305 SF +L+ LE + L+ P ++ ++ Q A G + TV+ + A Sbjct: 367 SFALLLNFLESQGDVHVLSSPRISTLNNQKAVLKVGTDEFFVTEISGGSQATVNVAGTAP 426 Query: 306 SVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGD----MPSYR 352 ++ T + G+VL TP + I L + +S +G G M S Sbjct: 427 TIKTQPFFSGIVLDVTPKIDENNEIILHVHPSISSVTTVNKVLNLGATTGTYTLPMASSS 486 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + + D+ V G + + GL++ D + G+P LSK Sbjct: 487 ISETDSIVRARDGQIVAIGGLMRQDSTNGESGLPGLSK 524 >gi|325927686|ref|ZP_08188914.1| HrcC protein [Xanthomonas perforans 91-118] gi|325541887|gb|EGD13401.1| HrcC protein [Xanthomonas perforans 91-118] Length = 607 Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust. Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%) Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + TI E+R ++ +G QH+ TG G F G ++G V G Sbjct: 371 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVGG 429 Query: 250 VL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 L R+ T + ALE + ++ P + + A Q + S Sbjct: 430 TLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359 + + GV L P+V+ PG +R+ + + +G N D +P + T Sbjct: 487 ASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQ 545 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + IP LSKIP++G LF++ + + + TP +V Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAIPGLSKIPLVGNLFKHRQKSGTRMQRLFLLTPHVV 605 Query: 420 KP 421 P Sbjct: 606 SP 607 >gi|167828524|ref|ZP_02459995.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 9] gi|226199138|ref|ZP_03794700.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|225928913|gb|EEH24938.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] Length = 588 Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 8/164 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + AL+ + ++ A P + + A + + K +S SV+T GV L Sbjct: 425 VSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVST---GVSLRV 481 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P ++ G RI + + + + G ++P + +T + G ++++AG Sbjct: 482 LPMIVQDGSETRIKMNVHVTDGQ-LTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST 540 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 D G+P LSKIP+LGALFR ++ E +P ++ Sbjct: 541 DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRII 584 >gi|78045991|ref|YP_362166.1| HrcC protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|462304|sp|P80151|HRPA1_XANEU RecName: Full=Hypersensitivity response secretion protein hrpA1; Flags: Precursor gi|398109|gb|AAA27603.1| hrpA1 [Xanthomonas campestris] gi|984886|gb|AAB08464.1| HrpA1 [Xanthomonas euvesicatoria] gi|78034421|emb|CAJ22066.1| HrcC protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 607 Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust. Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 23/242 (9%) Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + TI E+R ++ +G QH+ TG G F G ++G V G Sbjct: 371 IDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVGG 429 Query: 250 VL-------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 L R+ T + ALE + ++ P + + A Q + S Sbjct: 430 TLTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTT 359 + + GV L P+V+ PG +R+ + + +G N D +P + T Sbjct: 487 ASADLYNLSAGVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQ 545 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + IP LSKIP++G LF++ + + + TP +V Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAIPGLSKIPLVGNLFKHRQKSGTRMQRLFLLTPHVV 605 Query: 420 KP 421 P Sbjct: 606 SP 607 >gi|294055173|ref|YP_003548831.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] gi|293614506|gb|ADE54661.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] Length = 709 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 18/136 (13%) Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEV----SEPVIGVNAGDM----------PSYRVRK 355 D G+ L TP + + G + + I+ V SE N GD P VR+ Sbjct: 527 RDVGIQLTVTPLIGADGSVTMTIEQTVDTIFSESST-TNTGDEDGTTSSVDTNPVIGVRE 585 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF--RNSRFNREETEIFIA 413 A++T+ + I+L GL ++ + + P++ ++P++G L + +NR E IF+ Sbjct: 586 ANSTITVNDREVIILGGLQENQREVSRTYFPIIGRMPLIGDLLSGKQIEYNRTELIIFVR 645 Query: 414 ATPFLVKPVAMRDLSR 429 T L P A +L+ Sbjct: 646 PT-ILRNPQAATELTE 660 >gi|167567958|ref|ZP_02360874.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia oklahomensis EO147] Length = 577 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 10/167 (5%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLH 317 ++AL+ + ++ A P L A S + + VS T A S+ T GV L Sbjct: 414 VNALQSTSKVKIDASP-LVATLDNSEAVMDNMTRFFVRVSGYTSADLYSIAT---GVSLR 469 Query: 318 FTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 P ++ G RI L + + + G +P + +T + G ++++AG Sbjct: 470 VLPLIVQDGSETRIKLNVHVTDGQ-LTGDLVDSIPVVTSSEINTQAFVGQGESLLIAGYS 528 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D G+P LSKIP++GALFR + E +P ++ P Sbjct: 529 TDKRSNGVTGVPWLSKIPLIGALFRYNSDEHSHMERVFLLSPRIIDP 575 >gi|325917024|ref|ZP_08179263.1| HrcC protein [Xanthomonas vesicatoria ATCC 35937] gi|325536775|gb|EGD08532.1| HrcC protein [Xanthomonas vesicatoria ATCC 35937] Length = 606 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 2/111 (1%) Query: 313 GVVLHFTPTVLSPGRIG-LRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVL 370 GV L P+V+ G +R+ + + +G N D +P + T + G ++++ Sbjct: 496 GVSLRVLPSVVPGSSNGQMRLDVRIEDGQLGANTVDGIPVITSSEITTQAFVNEGQSLLI 555 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 AG D Q +P LSKIP++G LF++ + + + TP +V P Sbjct: 556 AGYASDTDQTDLNKVPGLSKIPLIGNLFKHRQQSGSRLQRLFLLTPHIVSP 606 >gi|163786002|ref|ZP_02180450.1| type II general secretion pathway (GSP) D protein [Flavobacteriales bacterium ALC-1] gi|159877862|gb|EDP71918.1| type II general secretion pathway (GSP) D protein [Flavobacteriales bacterium ALC-1] Length = 718 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 21/159 (13%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-GATSVTTHDYG 313 +F + A+E ++ + P L ++G ASF++G Y V +T G + T + Sbjct: 544 NFFATVKAMETNGDLKIKSTPKLATLNGHRASFSNGQTSYYAVVQRNTIGNDNPQTTE-- 601 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVN----------AGDM-PSYRVRKADTT 359 + ++ P ++GL I+ V+ E ++ +N A D P R + Sbjct: 602 -IRNYFPV---DAKLGLEIKPYVTGNKEVLLNINVVQSNFGQRIAEDAPPDINSRDFSSV 657 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 V + VL GL ++ G+P L++IP++ LF Sbjct: 658 VRMKDQDIAVLGGLEENYSNNSGSGVPFLARIPLIKWLF 696 >gi|124024476|ref|YP_001018783.1| general (type II) secretion pathway protein D precursor [Prochlorococcus marinus str. MIT 9303] gi|123964762|gb|ABM79518.1| possible general (type II) secretion pathway protein D precursor [Prochlorococcus marinus str. MIT 9303] Length = 849 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 35/60 (58%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + G T++L G++ D Q+ P+L IP++G FR++ + ++E+ I TP ++ Sbjct: 761 VRVRDGQTLILTGVISDRDIQVVTKWPILGDIPVIGQFFRSTNGTKSKSELVIMVTPRII 820 >gi|187735593|ref|YP_001877705.1| type II and III secretion system protein [Akkermansia muciniphila ATCC BAA-835] gi|187425645|gb|ACD04924.1| type II and III secretion system protein [Akkermansia muciniphila ATCC BAA-835] Length = 907 Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust. Identities = 16/69 (23%), Positives = 40/69 (57%) Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + P + R +T++ + G T+ + GL+ +++Q +++ +P+ +P++G FR++ N Sbjct: 803 EQPIFSKRSVETSLFIYDGHTVAIGGLITENVQTVEDKVPIFGDLPLIGRFFRSNSDNHI 862 Query: 407 ETEIFIAAT 415 + + I T Sbjct: 863 KKNLMIFVT 871 >gi|170738269|ref|YP_001779529.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia cenocepacia MC0-3] gi|169820457|gb|ACA95039.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia cenocepacia MC0-3] Length = 588 Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 8/163 (4%) Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFT 319 ALE + A P +T + A + Q + VS T A SV+T GV L Sbjct: 429 ALEEQNLAKIDASPKVTTLDNIEADMANQTQFFVR-VSGYTSADLYSVST---GVSLRVL 484 Query: 320 PTVLSPG-RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P V+ G R +++ + + + D +P +T+ + G +++AG D Sbjct: 485 PMVVDEGGRTQIKLDVAIQDGQLTSRTVDNIPVISSTNINTSAFVNEGEALLIAGYKNDG 544 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G+P+LSKIP++G LF+ + E TP +++ Sbjct: 545 RIDTTTGVPVLSKIPVIGNLFKYTDRENTRMERLFLLTPRIIE 587 >gi|304412101|ref|ZP_07393711.1| type II and III secretion system protein [Shewanella baltica OS183] gi|307305996|ref|ZP_07585742.1| type II and III secretion system protein [Shewanella baltica BA175] gi|304349651|gb|EFM14059.1| type II and III secretion system protein [Shewanella baltica OS183] gi|306911489|gb|EFN41915.1| type II and III secretion system protein [Shewanella baltica BA175] Length = 487 Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust. Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 5/167 (2%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D F AL R + E L + Q F G + V S S + Sbjct: 319 DTVDFFKNFQALYTNNMARGVYETNLLVLENQQGHF--GKKETATVVLISDKQVSTQKIE 376 Query: 312 YGVVLHFTPTVLSPGRIGLR---IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 L+ T +L G++ + I+ +S+ A P + + V + G T+ Sbjct: 377 AENSLYVTGRLLPSGKVQAKFSYIEESLSDDKAEGGATQAPRVNSQSLTSEVYIEPGQTV 436 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +L G ++ G+P+LS IP LG LF++ + + + + +++ + Sbjct: 437 ILGGFDNTVTDSVESGVPILSSIPWLGELFKSKKETKRKYKRYVSVS 483 >gi|255624862|ref|XP_002540535.1| conserved hypothetical protein [Ricinus communis] gi|223495099|gb|EEF21848.1| conserved hypothetical protein [Ricinus communis] Length = 150 Score = 40.8 bits (94), Expect = 0.53, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E K ++++ + K ++++P VQ V +P ++ +P T+Y+ G +VG N+I+ Sbjct: 58 EAAKPAQLALQVGKSSLMRLPEPVQHRSVGNPLVVQALMVAPDTLYIAGVDVGTTNMIIQ 117 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 G G + LDI + D + L+ L + D + Sbjct: 118 GKSGLCSV-LDITVAMDPSALQAMLATAMPDEH 149 >gi|330951304|gb|EGH51564.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae Cit 7] Length = 106 Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 10/96 (10%) Query: 326 GRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 RI + ++ EP V+GV P + + + V + G TIV+ G+ + + Sbjct: 4 NRIIMEVKVTKDEPDYLNAVLGV-----PPIKKNEVNAKVLISDGETIVIGGVFSNTQSK 58 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + + +P L +P LG LFR + ++E+ + TP Sbjct: 59 VVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTP 94 >gi|301167753|emb|CBW27337.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 459 Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 L I+TE+S P+ A + S K + V++ G ++ + + IQ +P LS Sbjct: 372 LNIETELSRPMQSSGASTISS---NKTKSRVKITQGKSLKITDIGHQGIQHQNTSLPYLS 428 Query: 390 KIPILGALFRNS 401 KIP+LG LF +S Sbjct: 429 KIPLLGKLFTSS 440 >gi|153878167|ref|ZP_02004504.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152065369|gb|EDN65496.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 93 Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVKPVA 423 G IV+ GL++ + Q K+GIP L P++G+ LF ++ N + TE+ + P +V P A Sbjct: 6 GTAIVIGGLIQVNNQDDKQGIPGLQDFPLIGSILFSSTSNNDKHTELVLIIIPEVVNPAA 65 >gi|289663772|ref|ZP_06485353.1| HrcC protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668194|ref|ZP_06489269.1| HrcC protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 593 Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 19/240 (7%) Query: 198 LKVTIAEVRRDILKQIGF------QHS--ITGSSSGPSKSF-----AADFGGKFVSEGGD 244 + TI EVR ++ +G QH+ TG G F A G GG Sbjct: 357 IDATIIEVRDGAMQDLGVDWRFHSQHTDVQTGDGRGGQLGFDGALSGAATQGTMTPVGGT 416 Query: 245 FS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + V G R+ T + ALE + ++ P + + A Q + S Sbjct: 417 LTAVLGDAGRY-LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGYA 473 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIG-LRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVE 361 + + GV L P+V+ G +R+ + + +G N D +P + T Sbjct: 474 SADLYNLSAGVSLRVLPSVVPGSSNGQMRLDVRIEDGQLGSNTVDGIPVITSSEITTQAF 533 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G ++++AG D + +P LSKIP++G LF++ + + + TP +V P Sbjct: 534 VNEGQSLLIAGYAYDADETDLNAVPGLSKIPLVGNLFKHRQKSGSRMQRLFLLTPHVVSP 593 >gi|197335747|ref|YP_002157088.1| fimbrial assembly protein PilQ [Vibrio fischeri MJ11] gi|197317237|gb|ACH66684.1| fimbrial assembly protein PilQ [Vibrio fischeri MJ11] Length = 562 Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 3/150 (2%) Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 ++ P L + + A G + Y SSS GATSV+ + L TP + R+ L Sbjct: 412 ISSPRLITTNKKPAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVTPQITPDNRLVLD 470 Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + P V+ G+ + ++ T V + +G T+VL G+ + + E +PLL Sbjct: 471 LTVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVDNGETVVLGGIYQHSLSNSVEKVPLLG 530 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+LGALFR S N + E+ I TP +V Sbjct: 531 DLPLLGALFRRSSENIGKKELLIFVTPKVV 560 >gi|157163911|ref|YP_001467431.1| type II and III secretion system protein [Campylobacter concisus 13826] gi|112801005|gb|EAT98349.1| bacterial type II and III secretion system protein [Campylobacter concisus 13826] Length = 380 Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust. Identities = 46/213 (21%), Positives = 93/213 (43%), Gaps = 14/213 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 +QVT K+TI E +K +G Q + + G + +++ +K Sbjct: 155 EQVTFKLTITETNLKDIKDLGTNLQGLLKPLNHGDLAYYINLITSPYITNSN--VIKN-- 210 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVT 308 + +F +L+ L+ + ++ P LTA + F+S Y KT S+ Sbjct: 211 NDSAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTD 270 Query: 309 THDY---GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +++Y G+ ++ P +LS I + + E ++ ++ P ++ ++ L G Sbjct: 271 SYEYKDIGLKINLKPIILS-DHIDFDLHL-ILEDILSQSSSFTPIVSKKELKSSYSLKRG 328 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 +VL+G+ K + + G+P+L I +L LF Sbjct: 329 DVLVLSGINKKTNAKQRNGVPVLKDIWLLKYLF 361 >gi|53802350|ref|YP_112861.1| fimbrial assembly protein PilQ [Methylococcus capsulatus str. Bath] gi|53756111|gb|AAU90402.1| fimbrial assembly protein PilQ [Methylococcus capsulatus str. Bath] Length = 729 Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 38/71 (53%) Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+ DT ++ +G T+VL G+ + + + +P +P +G +FR + + E+ I Sbjct: 657 REIDTVAQVANGETVVLGGVYEGTRRNNTDKVPFFGDLPGIGFMFRRNAVEDRKKELLIF 716 Query: 414 ATPFLVKPVAM 424 TP +VK +M Sbjct: 717 ITPKIVKQTSM 727 >gi|183600572|ref|ZP_02962065.1| hypothetical protein PROSTU_04158 [Providencia stuartii ATCC 25827] gi|188019849|gb|EDU57889.1| hypothetical protein PROSTU_04158 [Providencia stuartii ATCC 25827] Length = 562 Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust. Identities = 48/232 (20%), Positives = 96/232 (41%), Gaps = 26/232 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L + I ++ R L +G + ++G + A F +S DF ++ +D Sbjct: 309 QVELSLWIIDITRSELDNLGVNWEVGTINTGNT---AFSFNRSTLSNSTDFLLR--VDAL 363 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 S H + R L + + A+ + SF Y + AT + YG Sbjct: 364 SKSGNGHIVSRPVL---LTQENIPALFDNNTSF-------YAKLQGERIAT-LEQVTYGT 412 Query: 315 VLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 ++ P + S ++ + + E S+ N +PS +T + +++ Sbjct: 413 MVSVMPRISSGHQVEMEVNIEDGGEKQSKSGEVSNVEGLPSVNRTTINTVARIAQNSSLL 472 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G ++ + + + IPLL IP++G LF ++ N+++ FL++P Sbjct: 473 IGGYTREQVVENESHIPLLGDIPLIGGLFSHTSVNKQK-----MVRLFLIQP 519 >gi|226946542|ref|YP_002801615.1| secretion system protein [Azotobacter vinelandii DJ] gi|226721469|gb|ACO80640.1| Bacterial secretion system protein [Azotobacter vinelandii DJ] Length = 717 Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust. Identities = 37/173 (21%), Positives = 76/173 (43%), Gaps = 1/173 (0%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D + L A+E+ +++P + ++A +G + Y+ SSS ATS + + Sbjct: 542 DHLILDLQLSAMEKTGNGEVISQPKVLTSDKETAKILTGEEIPYQEASSSG-ATSTSFKE 600 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + L TP + RI + ++ + +P + + V + G TIV+ Sbjct: 601 AALSLEVTPQITPDNRIIMEVKVTKDQADFAKALNGVPPINKNEVNAKVLIGDGETIVIG 660 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G+ + + + +P L +P +G LFR ++E+ + TP ++ A+ Sbjct: 661 GVFSNIQAKSVDKVPFLGDLPFIGRLFRRDVVADSKSELLVFLTPRILNSQAI 713 >gi|114797223|ref|YP_760566.1| general secretion pathway protein D [Hyphomonas neptunium ATCC 15444] gi|114737397|gb|ABI75522.1| general secretion pathway protein D [Hyphomonas neptunium ATCC 15444] Length = 653 Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 256 FETVLHALERATAIRTLAEP--------TLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 F +L+A+E TA R L+ P T I GQ T+G Q L + ++S +V Sbjct: 430 FGVILNAVEDDTASRILSTPFGMTLNNATSALIVGQEIPVTTG-QVLGE--ANSNPFRTV 486 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSG 365 D G+ L TP + + L I+ EVS V G P + R+ +V G Sbjct: 487 ERKDIGIQLEVTPRIGENDTVRLDIRQEVSS-VFGSVGTVTPDLILDKREIRASVLADDG 545 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 IVL GL++ +P+L IP +G LFR+ Sbjct: 546 EIIVLGGLVEQTDTLRDTKVPVLGDIPGVGRLFRS 580 >gi|224418841|ref|ZP_03656847.1| putative type II secretion system D [Helicobacter canadensis MIT 98-5491] gi|253828170|ref|ZP_04871055.1| secretion system protein [Helicobacter canadensis MIT 98-5491] gi|253511576|gb|EES90235.1| secretion system protein [Helicobacter canadensis MIT 98-5491] Length = 496 Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 17/183 (9%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGA-TSVTTH 310 S ++ LE + +++ P + ++ Q A + G Y+ T+ +T A T++T Sbjct: 297 LSLNRIIEFLESYGKVESISNPKVLTLNNQPAMISVGDILRYQKNTIYQNTNAQTTLTNT 356 Query: 311 DY-------GVVLHFTPTVLSPGRIGLRI-----QTEVSEPVIGVNAGDMP-SYRVRKAD 357 D GV+L TP V I L+I +T+ + I A + P + + Sbjct: 357 DNEYPSLFAGVLLDITPLVFGE-EIMLKINPSITKTKENRTEIPNTAFETPPNLTTNQLS 415 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + V + + ++L GL+ + + IP+L IP++ LF S+ EI P Sbjct: 416 SIVSVKNNQKVILGGLISKNFATKENKIPILGSIPLIKPLFSYSQEVENTEEIVFIIEPK 475 Query: 418 LVK 420 +++ Sbjct: 476 IIQ 478 >gi|119510022|ref|ZP_01629163.1| general secretion pathway protein D [Nodularia spumigena CCY9414] gi|119465346|gb|EAW46242.1| general secretion pathway protein D [Nodularia spumigena CCY9414] Length = 826 Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 35/58 (60%) Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T+ L G T++L+G++++ + +P+L +P++G+LFR + + E+ + TP Sbjct: 734 TIRLRDGQTLILSGIIQESDRTSVSKLPILGDLPLIGSLFRRTNRQNQRQEVIVLLTP 791 >gi|75909894|ref|YP_324190.1| type II and III secretion system protein [Anabaena variabilis ATCC 29413] gi|75703619|gb|ABA23295.1| type II and III secretion system protein [Anabaena variabilis ATCC 29413] Length = 811 Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 34/57 (59%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + L G T++L+G++++ + +P+L +P++G+LFR + E E+ + TP Sbjct: 720 IRLRDGQTLILSGIIQESDRSTVSKLPILGDLPLIGSLFRKTNRTNERREVIVLLTP 776 >gi|170690596|ref|ZP_02881763.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia graminis C4D1M] gi|170145031|gb|EDT13192.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia graminis C4D1M] Length = 609 Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 8/165 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLH 317 ++AL+++ + A P + ++ A + + VS T A SV+T GV L Sbjct: 448 VNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVR-VSGYTSADLYSVST---GVSLR 503 Query: 318 FTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLK 375 P V+ GR +++ + + I D +P +T + G ++++AG Sbjct: 504 VLPLVVEESGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESFVGQGESLLIAGYRV 563 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 D + G+P LSKIP++G LFR R E +P +++ Sbjct: 564 DTSTNGETGVPGLSKIPLIGGLFRYRDDQRSHMERLFLLSPRIIE 608 >gi|330819413|ref|YP_004348275.1| Type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia gladioli BSR3] gi|327371408|gb|AEA62763.1| Type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia gladioli BSR3] Length = 596 Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 36/73 (49%) Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+P + +T + G ++++AG D G+P LS+IP+LGALFR + Sbjct: 520 DIPVITTSQINTQAFVGLGESLLIAGFTTDTQTNGVTGVPFLSRIPLLGALFRYHSDDHS 579 Query: 407 ETEIFIAATPFLV 419 E TP ++ Sbjct: 580 HGERVFLLTPRII 592 >gi|170723341|ref|YP_001751029.1| general secretion pathway protein D [Pseudomonas putida W619] gi|169761344|gb|ACA74660.1| general secretion pathway protein D [Pseudomonas putida W619] Length = 650 Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 14/147 (9%) Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ F +G T +++ ++ + GV L P + + L I EVS Sbjct: 468 GQEVPFVTGS----VTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIAD 523 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN- 400 A D+ + + R+ T V + G ++L GL+ D++ + +P L IP LG LFR+ Sbjct: 524 SSAASDVITNK-REIKTKVMVEDNGLVILGGLISDELSTSDQRVPFLGDIPGLGRLFRSE 582 Query: 401 -SRFNREETEIFIAATPFLVKPVAMRD 426 S+ ++ +FI +P +RD Sbjct: 583 ASKNTKQNLMVFI-------RPRILRD 602 >gi|313142359|ref|ZP_07804552.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131390|gb|EFR49007.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 505 Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 17/183 (9%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGA-TSVTTH 310 S ++ LE + +++ P + ++ Q A + G Y+ T+ +T A T++T Sbjct: 306 LSLNRIIEFLESYGKVESISNPKVLTLNNQPAMISVGDILRYQKNTIYQNTNAQTTLTNT 365 Query: 311 DY-------GVVLHFTPTVLSPGRIGLRI-----QTEVSEPVIGVNAGDMP-SYRVRKAD 357 D GV+L TP V I L+I +T+ + I A + P + + Sbjct: 366 DNEYPSLFAGVLLDITPLVFGE-EIMLKINPSITKTKENRTEIPNTAFETPPNLTTNQLS 424 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + V + + ++L GL+ + + IP+L IP++ LF S+ EI P Sbjct: 425 SIVSVKNNQKVILGGLISKNFATKENKIPILGSIPLIKPLFSYSQEVENTEEIVFIIEPK 484 Query: 418 LVK 420 +++ Sbjct: 485 IIQ 487 >gi|284007665|emb|CBA73372.1| Type III secretion outermembrane pore forming protein YscC,MxiD,HrcC,InvG [Arsenophonus nasoniae] Length = 554 Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFIAATP 416 T + G ++++ G ++DI + IPLL IP +G LFR +S N++ IF+ P Sbjct: 455 TVARVAQGDSLLIGGYTREDIDSSESKIPLLGDIPWIGGLFRFSSTTNKKMVRIFMLQ-P 513 Query: 417 FLVK 420 LVK Sbjct: 514 RLVK 517 >gi|320107685|ref|YP_004183275.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] gi|319926206|gb|ADV83281.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] Length = 617 Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 +SS + D G+ L TP + G + + ++ ++ E + G D+P + + Sbjct: 479 ASSVVVPQIQYEDLGLTLKATPHMQRSGDVSVHLELKI-EALSGQAQNDIPILANQLVTS 537 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + L +G T ++ GLL + GIP LS +P ++ N+ N+ E E+ + TP + Sbjct: 538 DLTLRAGETAMIMGLLTRSQSKAISGIPGLSDLPGFQSITDNT-GNKMEDEMVLLLTPVV 596 Query: 419 VK 420 V+ Sbjct: 597 VR 598 >gi|21230696|ref|NP_636613.1| HrcC protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769309|ref|YP_244071.1| HrcC protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992461|ref|YP_001904471.1| HrcC protein [Xanthomonas campestris pv. campestris str. B100] gi|21112285|gb|AAM40537.1| HrcC protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574641|gb|AAY50051.1| HrcC protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734221|emb|CAP52429.1| HrcC protein [Xanthomonas campestris pv. campestris] Length = 605 Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 4/112 (3%) Query: 313 GVVLHFTPTVLSPGRIG--LRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIV 369 GV L P+V+ PG +R+ + + +G N D +P + T + G +++ Sbjct: 495 GVSLRVLPSVV-PGSPNGQMRLDVRIEDGQLGANTVDGIPVITSSEITTQAFVNEGQSLL 553 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +AG D Q +P LS+IP++G LF++ + + + TP +V P Sbjct: 554 IAGYASDTDQTDLNNVPGLSRIPLVGNLFKHRQQSGSRLQRLFLLTPHIVSP 605 >gi|323143301|ref|ZP_08077992.1| type III secretion outer membrane pore, YscC/HrcC family [Succinatimonas hippei YIT 12066] gi|322416918|gb|EFY07561.1| type III secretion outer membrane pore, YscC/HrcC family [Succinatimonas hippei YIT 12066] Length = 610 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 25/207 (12%) Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-SS 300 GG FS D+ +F ++ LE RTL P++ + A+ + K + Sbjct: 361 GGIFSTVFSTDQSAFMMQVNMLEEDNKARTLGRPSVLTLDNVEATLEDTTTNYVKVAGNE 420 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPG-------RIGLRIQTE----------VSEPVIGV 343 S+ V + G +L TP ++ ++ + +QT VS G Sbjct: 421 SSDLFEVVS---GTILRVTPHIIDSHDGSAPYIQMVISLQTNQDTDQSQSYTVSSDAQGA 477 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + +P + +T + G +++L G ++ + GIP+L IP++G LF +S Sbjct: 478 DE-RIPVIKKTTINTQALVQQGQSLLLGGYYMENHRNSDNGIPVLKDIPLIGGLFGSSSD 536 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRP 430 + E + TP ++ + D++ P Sbjct: 537 EATQRERLLLITPRILD---LDDINLP 560 >gi|1903309|emb|CAA68047.1| orf 1035 [Spodoptera littoralis NPV] Length = 345 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG---EDQVTLKVTIAEVR 206 M R + S VEL LS S +++ N + M LL IAG ED+V+L+ T++E Sbjct: 1 MSRLVTPSP-CVELKRKLLSASPQSKVVNLDIYECMQLLRIAGDMYEDKVSLRPTLSESL 59 Query: 207 RDILKQI 213 RD + QI Sbjct: 60 RDKIVQI 66 >gi|318607000|emb|CBY28498.1| general secretion pathway protein D [Yersinia enterocolitica subsp. palearctica Y11] Length = 531 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 9/128 (7%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 +++ + AL + LA P++ + A F G Q + S+ T AT S++ Sbjct: 403 NWDGLFIALATNSNNNILATPSIVTLDNMEAEFNVG-QEVPVLTSTQTTATDKVYNSISR 461 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPS-YRVRKADTTVELPSGG 366 GV+L P + + L I+ EVS VNA ++ S + R + V + SG Sbjct: 462 QSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSVFNKRVVNNAVLVKSGE 521 Query: 367 TIVLAGLL 374 T+V+ GLL Sbjct: 522 TVVVGGLL 529 >gi|329847248|ref|ZP_08262276.1| outer membrane channel protein [Asticcacaulis biprosthecum C19] gi|328842311|gb|EGF91880.1| outer membrane channel protein [Asticcacaulis biprosthecum C19] Length = 158 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 38/70 (54%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G+ +++ N + + + V+V +P ADV V RT+Y+ GK G + V + G DG Sbjct: 25 GQPVTVEKNHTLRVTLVAPAGTVVVGNPDIADVTVVDSRTLYIVGKGFGSSAVNVAGRDG 84 Query: 107 KQMLNLDILI 116 + + + ++ + Sbjct: 85 RSLFDGEVTV 94 >gi|212711709|ref|ZP_03319837.1| hypothetical protein PROVALCAL_02784 [Providencia alcalifaciens DSM 30120] gi|212685811|gb|EEB45339.1| hypothetical protein PROVALCAL_02784 [Providencia alcalifaciens DSM 30120] Length = 567 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 26/232 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L + I ++ R L +G + SF A GG +S F+ + D Sbjct: 314 QVELSLWIIDITRSELDNLGVNWEV--------GSFKA--GGGSIS----FNRSTLPDSS 359 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + AL + + ++ P L A F + K T YG Sbjct: 360 KFLVQIDALSKNGNSQIVSRPVLLTQENVPALFDNNTSFYAKLQGERIATLEQVT--YGT 417 Query: 315 VLHFTPTVLSPGRIGLRIQTE---VSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 ++ P + + + + E S G N +PS +T + +++ Sbjct: 418 MISVMPRISGGQSVEMEVNIEDGAESRDSSGKTSNVEGLPSVNRTSINTVARIAKDSSLL 477 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +D + IPLL IP +G LFR+S N+++ FL++P Sbjct: 478 IGGYTRDQYIDNESKIPLLGDIPWIGGLFRHSSTNQQKM-----VRLFLIQP 524 >gi|325271188|ref|ZP_08137740.1| Type II secretory pathway, component PulD [Pseudomonas sp. TJI-51] gi|324103677|gb|EGC00972.1| Type II secretory pathway, component PulD [Pseudomonas sp. TJI-51] Length = 360 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 14/154 (9%) Query: 220 TGSSSGPSKSFAADF-GGKF--VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 TG S+G + S AA GK G F + L F VL AL R +++P+ Sbjct: 206 TGDSNGSAFSLAASLLKGKLNITLAGNPFDNQVSLSTSDFSAVLSALSSDNRFRVVSQPS 265 Query: 277 LTAISGQSASFTSGGQ-HLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 L SG A+F+ G + + VS + G+ SV D GV+ + P V + L Sbjct: 266 LRVRSGAEATFSVGAEVPVLGAVSYAQGSGEPIQSVQYRDSGVIFNLRPQVRE-STVDLV 324 Query: 332 IQTEVS---EPVIGVNAGDMPSYRVRKADTTVEL 362 + ++S + GVN + P+ R+ T+V++ Sbjct: 325 VDQQLSNFVQTTTGVN--NSPTLTKRQLTTSVQM 356 >gi|91210748|ref|YP_540734.1| putative phage-related secreted protein [Escherichia coli UTI89] gi|149365806|ref|ZP_01887841.1| putative phage-related secreted protein [Yersinia pestis CA88-4125] gi|165927175|ref|ZP_02223007.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938242|ref|ZP_02226801.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. IP275] gi|165938650|ref|ZP_02227206.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. IP275] gi|167422164|ref|ZP_02313917.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167466986|ref|ZP_02331690.1| putative phage-related secreted protein [Yersinia pestis FV-1] gi|191174647|ref|ZP_03036128.1| type II/III secretion system protein [Escherichia coli F11] gi|218929372|ref|YP_002347247.1| putative phage-related secreted protein [Yersinia pestis CO92] gi|229837795|ref|ZP_04457954.1| General secretion pathway protein D [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898356|ref|ZP_04513503.1| General secretion pathway protein D [Yersinia pestis biovar Orientalis str. India 195] gi|91072322|gb|ABE07203.1| putative phage-related secreted protein [Escherichia coli UTI89] gi|115347983|emb|CAL20908.1| putative phage-related secreted protein [Yersinia pestis CO92] gi|149292219|gb|EDM42293.1| putative phage-related secreted protein [Yersinia pestis CA88-4125] gi|165913524|gb|EDR32145.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. IP275] gi|165913903|gb|EDR32521.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920843|gb|EDR38091.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. F1991016] gi|166958976|gb|EDR55997.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|190905074|gb|EDV64732.1| type II/III secretion system protein [Escherichia coli F11] gi|229688646|gb|EEO80715.1| General secretion pathway protein D [Yersinia pestis biovar Orientalis str. India 195] gi|229694161|gb|EEO84208.1| General secretion pathway protein D [Yersinia pestis biovar Orientalis str. PEXU2] Length = 414 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 29/253 (11%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQ 195 V +SD +L G V ++ AV ++ SG + Y N + ++L G ED Sbjct: 116 VAYLSD--ILGGYVSGSFNNSGAVISDDSLKGSSGASNYIN----RTGDILVYYGTKEDI 169 Query: 196 VTLK--VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LD 252 LK VT + D + G+ + S S S A K +S+ + SV LD Sbjct: 170 AILKTLVTSLDTMSDEVVVSGYVFEVQTSQSDGSGILLA---AKILSDKFNISVGAAGLD 226 Query: 253 RF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---TVSSSTG 303 F S + + + L+ + ++ P L + SASF+ G TV+++T Sbjct: 227 NFINIRTGSIDAIFNLLKTDSRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTT 286 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTV 360 SV GV+ + TP++ S + L+IQ ++S V GVN + P+ R T V Sbjct: 287 TQSVEYRSSGVLFNVTPSIKSR-TMDLKIQQQLSNFVTTETGVN--NSPTLIKRDVTTEV 343 Query: 361 ELPSGGTIVLAGL 373 L G I+L GL Sbjct: 344 SLADGDIILLGGL 356 >gi|295690803|ref|YP_003594496.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC 21756] gi|295432706|gb|ADG11878.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC 21756] Length = 132 Score = 39.7 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 1/98 (1%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 N+ + + + + I L + ++DV+V DP ADV + + RT+ + GK G Sbjct: 16 NVDAAAQSRPAALPLATGQAISLSLGGAMRDVVVGDPEVADVSIVNERTLVVLGKRPGVT 75 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 N+++ G G+ + + +++ + +T+ R + SN Sbjct: 76 NLLVFGAGGRALTDRQLIVS-EAGGAAVTVYRGVTTSN 112 >gi|238918877|ref|YP_002932391.1| type III secretion outer membrane pore, YscC/HrcC family, [Edwardsiella ictaluri 93-146] gi|84663086|gb|ABC60068.1| EsaC [Edwardsiella ictaluri 93-146] gi|238868445|gb|ACR68156.1| type III secretion outer membrane pore, YscC/HrcC family, putative [Edwardsiella ictaluri 93-146] Length = 494 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 33/224 (14%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + VTI +V + Q+G S + G SF + GG+ S+ FS + + S Sbjct: 272 IEISVTIIDVDAGDINQLGIDWSASARIGGGQVSF--NNGGRLNSD--SFS-SLISNSGS 326 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L ALE+ + + ++ P++ + A K S T G + Sbjct: 327 FMVRLSALEQQSKAKIVSRPSVVTLDNVQAVLDRSITFYTKLSSEKNPKLEAITS--GAL 384 Query: 316 LHFTPTVL--------------SPGRIGLRI-QTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + TP ++ GR G + QTE +P + + T Sbjct: 385 MRVTPRLIRENGGNKVLLILNIEDGRQGAPLSQTE-----------SLPQVQNAEIATQA 433 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 L G ++L G ++++ Q IPLL +P++G LFR++ N Sbjct: 434 TLNLGQALLLGGFVQNENTQGVRKIPLLGDLPLIGGLFRSTDRN 477 >gi|306813501|ref|ZP_07447691.1| putative phage-related secreted protein [Escherichia coli NC101] gi|305853246|gb|EFM53686.1| putative phage-related secreted protein [Escherichia coli NC101] Length = 414 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 29/253 (11%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQ 195 V +SD +L G V ++ AV ++ SG + Y N + ++L G ED Sbjct: 116 VAYLSD--ILGGYVSGSFNNSGAVISDDSLKGSSGASNYIN----RTGDILVYYGTKEDI 169 Query: 196 VTLK--VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LD 252 LK VT + D + G+ + S S S A K +S+ + SV LD Sbjct: 170 AILKTLVTSLDTMSDEVVVSGYVFEVQTSQSDGSGILLA---AKILSDKFNISVGAAGLD 226 Query: 253 RF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---TVSSSTG 303 F S + + + L+ + ++ P L + SASF+ G TV+++T Sbjct: 227 NFINIRTGSIDAIFNLLKTDSRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTT 286 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTV 360 SV GV+ + TP++ S + L+IQ ++S V GVN + P+ R T V Sbjct: 287 TQSVEYRSSGVLFNVTPSIKSR-TMDLKIQQQLSNFVTTETGVN--NSPTLIKRDVTTEV 343 Query: 361 ELPSGGTIVLAGL 373 L G I+L GL Sbjct: 344 SLADGDIILLGGL 356 >gi|192384691|dbj|BAG49616.1| HrcC [Pseudomonas viridiflava] Length = 671 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 10/201 (4%) Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S +++ + +FG ++ G DRF + + ALE +A P++ + Sbjct: 319 SRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFAD--IQALEGQGVASVIARPSVLTLEN 376 Query: 283 QSASFT-SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSE 338 Q A S ++ T VT G L P ++ P R L + E + Sbjct: 377 QPAVIDFSRTAYITTTGERVANVQPVTA---GTSLRVIPRTIAGEQPNRFQLIVDIEDGQ 433 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + D P + T + ++V+ G D+ + ++ +P+L +P++GALF Sbjct: 434 -LERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALF 492 Query: 399 RNSRFNREETEIFIAATPFLV 419 + R E TP LV Sbjct: 493 TSKRHEVSRRERLFILTPRLV 513 >gi|315497470|ref|YP_004086274.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48] gi|315415482|gb|ADU12123.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48] Length = 141 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 37/68 (54%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 KI + N + +P V+V +P ADV V RT+Y+ G+ G+++V + G+ Sbjct: 27 KIVVEKNHSTRVVLPASAGSVIVGNPEVADVTVVDSRTIYIMGRGFGRSSVSVTDSAGRN 86 Query: 109 MLNLDILI 116 + + D+++ Sbjct: 87 IFDADVMV 94 >gi|212702669|ref|ZP_03310797.1| hypothetical protein DESPIG_00697 [Desulfovibrio piger ATCC 29098] gi|212673941|gb|EEB34424.1| hypothetical protein DESPIG_00697 [Desulfovibrio piger ATCC 29098] Length = 651 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 13/175 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + ALE R L +P++ + AS + + Y VS + ++ + D G V Sbjct: 375 FLARVTALEEDGQARVLGKPSVLTMDNVQASLENTSSY-YVPVSGNE-SSDLFKIDSGTV 432 Query: 316 LHFTPTVLSPGRIG----LRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSG 365 L TP ++ PG G +++ V + + V+ ++ + K +T + G Sbjct: 433 LKVTPHII-PGLPGQADSIKLMVSVQDDRDDGSNLFSVDPNNLSPIKQTKINTQAIVGEG 491 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++++ G + + GIP L IPILG LF + + E I TP +V+ Sbjct: 492 QSLLIGGHYYEIQSDAETGIPGLKNIPILGGLFGATGKKHQRMERLILITPRIVR 546 >gi|51103131|gb|AAT96274.1| hrcC [Pseudomonas viridiflava] Length = 753 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 10/201 (4%) Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S +++ + +FG ++ G DRF + + ALE +A P++ + Sbjct: 401 SRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFAD--IQALEGQGVASVIARPSVLTLEN 458 Query: 283 QSASFT-SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSE 338 Q A S ++ T VT G L P ++ P R L + E + Sbjct: 459 QPAVIDFSRTAYITTTGERVANVQPVTA---GTSLRVIPRTIAGEQPNRFQLIVDIEDGQ 515 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + D P + T + ++V+ G D+ + ++ +P+L +P++GALF Sbjct: 516 -LERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALF 574 Query: 399 RNSRFNREETEIFIAATPFLV 419 + R E TP LV Sbjct: 575 TSKRHEVSRRERLFILTPRLV 595 >gi|51103213|gb|AAT96354.1| hrcC [Pseudomonas viridiflava] Length = 671 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 10/201 (4%) Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S +++ + +FG ++ G DRF + + ALE +A P++ + Sbjct: 319 SRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFAD--IQALEGQGVASVIARPSVLTLEN 376 Query: 283 QSASFT-SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSE 338 Q A S ++ T VT G L P ++ P R L + E + Sbjct: 377 QPAVIDFSRTAYITTTGERVANVQPVTA---GTSLRVIPRTIAGEQPNRFQLIVDIEDGQ 433 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + D P + T + ++V+ G D+ + ++ +P+L +P++GALF Sbjct: 434 -LERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALF 492 Query: 399 RNSRFNREETEIFIAATPFLV 419 + R E TP LV Sbjct: 493 TSKRHEVSRRERLFILTPRLV 513 >gi|238755999|ref|ZP_04617324.1| Possible type III secretion system protein [Yersinia ruckeri ATCC 29473] gi|238705788|gb|EEP98180.1| Possible type III secretion system protein [Yersinia ruckeri ATCC 29473] Length = 558 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 51/250 (20%), Positives = 96/250 (38%), Gaps = 26/250 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L + I ++ + L ++G + SI +G GG G F+ + + Sbjct: 301 QVELSLWIIDISKKKLDEVGVRWSIGDLKAG---------GG-----GIAFNQSTLSNSA 346 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 F + A+ R + ++ P + A F + + T YG Sbjct: 347 KFLARVDAISRTGDAQIVSRPIVLTQENIPALFDNNSSFYARLEGERVAKLEQVT--YGT 404 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEP-VIGVN----AGDMPSYRVRKADTTVELPSGGTIV 369 ++ P + ++ + + E P G N G +P T + +++ Sbjct: 405 MVSVLPRISQGDQVEMDVNIEDGSPGRAGSNDVDQIGGLPIVNRTNISTVARIAKDSSLL 464 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + G +D +++ E IPLL IP LG LF + R + ++ I + FL++P + + Sbjct: 465 IGGYTRDQLEESDEKIPLLGSIPYLGRLF-SYRSSNQQKMIRV----FLIQPRLLNESES 519 Query: 430 PDDHYSVEDD 439 D E D Sbjct: 520 WDGRQFSEKD 529 >gi|51103173|gb|AAT96315.1| HrcC [Pseudomonas viridiflava] Length = 753 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 10/201 (4%) Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S +++ + +FG ++ G DRF + + ALE +A P++ + Sbjct: 401 SRWSARAGSVNFGSSLLTGGSSTLFINDFDRFFAD--IQALEGQGVASVIARPSVLTLEN 458 Query: 283 QSASFT-SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSE 338 Q A S ++ T VT G L P ++ P R L + E + Sbjct: 459 QPAVIDFSRTAYITTTGERVANVQPVTA---GTSLRVIPRTIAGEQPNRFQLIVDIEDGQ 515 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + D P + T + ++V+ G D+ + ++ +P+L +P++GALF Sbjct: 516 -LERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKVPILGSLPVIGALF 574 Query: 399 RNSRFNREETEIFIAATPFLV 419 + R E TP LV Sbjct: 575 TSKRHEVSRRERLFILTPRLV 595 >gi|282890886|ref|ZP_06299403.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499240|gb|EFB41542.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus] Length = 956 Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust. Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 13/212 (6%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 TG + P+ S A G + G G L S ++ A+ T + P + Sbjct: 686 TGQTLLPNASGLARLPGYNLGVLGQNVSLGNLTFDSIGALVKAIHDKTNTNIIMNPKILT 745 Query: 280 ISGQSASFTSGGQHLYKTVS-SSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQT 334 +A G ++T S S+ G T + + + G TP + + + L I+ Sbjct: 746 EDNVTAEIFVGFNTPFQTQSISNIGGTPIANNFEFRNVGTTFKVTPFLGNNDIVTLEIRE 805 Query: 335 EVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 EVS V D+ P+ R+ + T V +P +VL+G+++D+ + + +P Sbjct: 806 EVSS-VASTTTSDVLNTALPGPTTRLSRTTTRVHVPDKYFLVLSGMMQDEDTRRRVNVPC 864 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L +PI+GA F + + + I I P ++ Sbjct: 865 LGGLPIIGAAFSDKTVSDAKRNIMIFIRPEII 896 >gi|170077129|ref|YP_001733767.1| general secretion pathway protein D [Synechococcus sp. PCC 7002] gi|169884798|gb|ACA98511.1| general secretion pathway protein D [Synechococcus sp. PCC 7002] Length = 788 Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +V L T++LAG + + +P+L IPILG+LFR+S E E+ TP + Sbjct: 698 SVRLRDDQTLILAGAIDERDITTTSKVPILGDIPILGSLFRSSSRTNERRELLFIITPQV 757 Query: 419 V 419 + Sbjct: 758 I 758 >gi|330963059|gb|EGH63319.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. actinidiae str. M302091] Length = 649 Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 19/230 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + I ++ R+ L ++ + + S G GG + + G S + + Sbjct: 320 IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFDAGTSSTLFLQNASK 370 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSSSTGATSVTTHDYGV 314 F LHALE + + P++ + Q A S ++L T + +T G Sbjct: 371 FSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTATSERAADILPITA---GT 427 Query: 315 VLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLA 371 L P L + G+ +++ ++ + I V+ PS R T + G++V+ Sbjct: 428 SLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVSTQAVIAEHGSLVIG 487 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419 G + IPLL IP +G L SR +RE + E TP L+ Sbjct: 488 GFHGLEANDRIHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILTPRLI 536 >gi|281356795|ref|ZP_06243286.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316922|gb|EFB00945.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 502 Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 32/65 (49%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L SG +L K+ + G+P LS+IPIL LF + NRE+T F+ L Sbjct: 412 CNLLSGEEKILTMWHKESEVEQTIGVPFLSEIPILKHLFSTTTINREKTWYFVTVRTVLA 471 Query: 420 KPVAM 424 P ++ Sbjct: 472 HPESL 476 >gi|3228547|gb|AAC34756.1| HrcC [Pseudomonas syringae pv. tomato] Length = 700 Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 10/195 (5%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-S 289 AA G + +GG S + + F LHALE + +A P++ + Q A S Sbjct: 347 AASEVGANLFDGGTSSTLFLQNASKFSAELHALEGNGSASVIANPSILTLENQPAVIDLS 406 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA--G 346 ++L T + +T G L P L + G+ +++ ++ + I V+ Sbjct: 407 RTEYLTPTSERAADILPITA---GTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTIND 463 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 PS R T + G++V+ G + IPLL IP +G L SR +RE Sbjct: 464 TQPSVRRGNVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSR-SRE 522 Query: 407 --ETEIFIAATPFLV 419 + E TP L+ Sbjct: 523 LSQRERLFILTPRLI 537 >gi|238759396|ref|ZP_04620561.1| Possible type III secretion system protein [Yersinia aldovae ATCC 35236] gi|238702423|gb|EEP94975.1| Possible type III secretion system protein [Yersinia aldovae ATCC 35236] Length = 557 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 45/211 (21%), Positives = 89/211 (42%), Gaps = 27/211 (12%) Query: 227 SKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAEPTL 277 ++S D G ++ E G+ V G + D +F + A+ + R ++ P + Sbjct: 315 TQSKVDDLGVRW--EAGNIGVAGGSVTFNRSTLSDSKTFLAQIDAISKTGNARIVSRPVI 372 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A F + Y V AT + YG ++ P + G G+ ++ + Sbjct: 373 LTQENVPALFDNN-TSFYARVEGDRVAT-LEQVTYGTMISVLPRL--SGGSGVEMEVNIE 428 Query: 338 EPVIG-------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + + + G +P +T + ++++ G +D +++ + IPLLS Sbjct: 429 DGGLNRDNTGKVADIGGLPEVNRTNINTVARIGRDKSLLIGGYTRDQVEEGETRIPLLSD 488 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKP 421 IP+LG LF+ N+++ I I FL++P Sbjct: 489 IPLLGNLFKYRSHNQQKM-IRI----FLIQP 514 >gi|119897096|ref|YP_932309.1| general secretion pathway protein D [Azoarcus sp. BH72] gi|119669509|emb|CAL93422.1| general secretion pathway protein D [Azoarcus sp. BH72] Length = 580 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 86/209 (41%), Gaps = 28/209 (13%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 A QV ++ TI EV Q G G+ P+ AA G + S + Sbjct: 295 AARRQVMIEATIVEVALGDEYQQGIDWRRLGN---PNWRVAARGSGDANALTPTLSY--L 349 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302 DR L LE + + L+ P L+ ++ Q+A + +Y V +ST Sbjct: 350 SDRLDVR--LDLLETFGSAKILSSPRLSVLNNQTAMLKVVEEVVYFLVDASTTQYDDADR 407 Query: 303 -GATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMP 349 T+ TT G+V+ T V + G I L ++ +S P +G +P Sbjct: 408 EKTTATTTPQSVSVGMVMALTAQVSAGGEIILNVRPTISSISGFKDDPNPSLGSIPNRVP 467 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDI 378 R R+ ++ + L SG T VL GL++D + Sbjct: 468 QIRTREIESVLRLRSGETAVLGGLIEDKV 496 >gi|222147187|ref|YP_002548144.1| pilus subunit transmembrane protein [Agrobacterium vitis S4] gi|221734177|gb|ACM35140.1| pilus subunit transmembrane protein [Agrobacterium vitis S4] Length = 159 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 38/69 (55%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 +N+ IL++ V V++ + AD V P+T+ L G++ G N++L+ G + + Sbjct: 47 MNQARILKLDRPVSKVIIGNEKVADATVADPKTIVLTGRSFGTTNLVLLDSQGNAIFDER 106 Query: 114 ILIERDIAH 122 IL+ D A+ Sbjct: 107 ILVSIDEAN 115 >gi|302129976|ref|ZP_07255966.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 699 Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 19/230 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + I ++ R+ L ++ + + S G GG + + G S + + Sbjct: 320 IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFDAGTSSTLFLQNASK 370 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSSSTGATSVTTHDYGV 314 F LHALE + + P++ + Q A S ++L T + +T G Sbjct: 371 FSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTATSERAADILPITA---GT 427 Query: 315 VLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLA 371 L P L + G+ +++ ++ + I V+ PS R T + G++V+ Sbjct: 428 SLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVSTQAVIAEHGSLVIG 487 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419 G + IPLL IP +G L SR +RE + E TP L+ Sbjct: 488 GFHGLEANDRIHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILTPRLI 536 >gi|257092071|ref|YP_003165712.1| type II and III secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044595|gb|ACV33783.1| type II and III secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 770 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 35/56 (62%) Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+ + G+++D +++ +E +P+L IP+LG LF+ ++I + TP +++ Sbjct: 544 GMTVAIGGMIRDSLERDEEKVPVLGDIPVLGYLFKRDVRASIRSQIVLLITPRVLE 599 >gi|162533078|ref|NP_791216.2| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato str. DC3000] gi|213968270|ref|ZP_03396414.1| outer membrane type III secretion hrcc [Pseudomonas syringae pv. tomato T1] gi|301383405|ref|ZP_07231823.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato Max13] gi|302061709|ref|ZP_07253250.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato K40] gi|119388972|gb|AAO54911.2| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato str. DC3000] gi|213926908|gb|EEB60459.1| outer membrane type III secretion hrcc [Pseudomonas syringae pv. tomato T1] Length = 699 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 19/230 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + I ++ R+ L ++ + + S G GG + + G S + + Sbjct: 320 IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFDAGTSSTLFLQNASK 370 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSSSTGATSVTTHDYGV 314 F LHALE + + P++ + Q A S ++L T + +T G Sbjct: 371 FSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTATSERAADILPITA---GT 427 Query: 315 VLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLA 371 L P L + G+ +++ ++ + I V+ PS R T + G++V+ Sbjct: 428 SLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVSTQAVIAEHGSLVIG 487 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419 G + IPLL IP +G L SR +RE + E TP L+ Sbjct: 488 GFHGLEANDRIHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILTPRLI 536 >gi|330872930|gb|EGH07079.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 699 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 19/230 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + I ++ R+ L ++ + + S G GG + + G S + + Sbjct: 320 IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFDAGTSSTLFLQNASK 370 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSSSTGATSVTTHDYGV 314 F LHALE + + P++ + Q A S ++L T + +T G Sbjct: 371 FSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTATSERAADILPITA---GT 427 Query: 315 VLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLA 371 L P L + G+ +++ ++ + I V+ PS R T + G++V+ Sbjct: 428 SLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVSTQAVIAEHGSLVIG 487 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419 G + IPLL IP +G L SR +RE + E TP L+ Sbjct: 488 GFHGLEANDRIHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILTPRLI 536 >gi|301019450|ref|ZP_07183622.1| bacterial type II and III secretion system protein [Escherichia coli MS 196-1] gi|299882211|gb|EFI90422.1| bacterial type II and III secretion system protein [Escherichia coli MS 196-1] Length = 358 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 29/253 (11%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQ 195 V +SD +L G V ++ AV ++ SG + Y N + ++L G ED Sbjct: 60 VAYLSD--ILGGYVSGSFNNSGAVISDDSLKGSSGASNYIN----RTGDILVYYGTKEDI 113 Query: 196 VTLK--VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LD 252 LK VT + D + G+ + S S S A K +S+ + SV LD Sbjct: 114 AILKTLVTSLDTMSDEVVVSGYVFEVQTSQSDGSGILLA---AKILSDKFNISVGAAGLD 170 Query: 253 RF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---TVSSSTG 303 F S + + + L+ + ++ P L + SASF+ G TV+++T Sbjct: 171 NFINIRTGSIDAIFNLLKTDSRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTT 230 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTV 360 SV GV+ + TP++ S + L+IQ ++S V GVN + P+ R T V Sbjct: 231 TQSVEYRSSGVLFNVTPSIKSR-TMDLKIQQQLSNFVTTETGVN--NSPTLIKRDVTTEV 287 Query: 361 ELPSGGTIVLAGL 373 L G I+L GL Sbjct: 288 SLADGDIILLGGL 300 >gi|167564548|ref|ZP_02357464.1| Type II secretory pathway, component PulD [Burkholderia oklahomensis EO147] Length = 400 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 7/138 (5%) Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHD 311 + + AL + + ++ P + +SG+ G Q ++ S G+ S+T D Sbjct: 260 DAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQD 319 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVL 370 G++ PTV+ I +++ E+S+ V D P+ R+ T + G IVL Sbjct: 320 AGLIFDVEPTVMR-EVIEVKVHEEISDFVATKTGVDTSPTKNTRQLQTVTRMKDGEVIVL 378 Query: 371 AGLLKDDIQQLKEGIPLL 388 GL++D + G L Sbjct: 379 GGLIQDRNATARSGYAWL 396 >gi|150398537|ref|YP_001329004.1| hypothetical protein Smed_3348 [Sinorhizobium medicae WSM419] gi|150030052|gb|ABR62169.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 140 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +L++ V V++ + AD V +T+ L G+N G N++++ DG M++ IL+ Sbjct: 45 VLKLDRPVSKVIIGNSDVADATVADAKTIVLTGRNFGTTNLVILDQDGNAMVDERILVSI 104 Query: 119 D 119 D Sbjct: 105 D 105 >gi|171315562|ref|ZP_02904798.1| putative bacteriophage-related lipoprotein [Burkholderia ambifaria MEX-5] gi|171099399|gb|EDT44137.1| putative bacteriophage-related lipoprotein [Burkholderia ambifaria MEX-5] Length = 142 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 11/105 (10%) Query: 280 ISGQSASFTSGGQ-----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 +SGQS G Q + S T SV D G++ PTV++ I +++ Sbjct: 1 MSGQSVRLNVGSQVPTLGSISYQGPSGTPVQSVQYQDAGLIFDVQPTVMA-DSIQVKLNE 59 Query: 335 EVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 E+S V GVN + P+ R+ TTV L G +VL GL++D Sbjct: 60 EMSSFVATSTGVN--NSPTKNTRQMATTVNLKDGEVVVLGGLVQD 102 >gi|297621836|ref|YP_003709973.1| putative type III secretion protein SctC [Waddlia chondrophila WSU 86-1044] gi|297377137|gb|ADI38967.1| putative type III secretion protein SctC [Waddlia chondrophila WSU 86-1044] Length = 1115 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 20/176 (11%) Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G + G F+ G L T H + + + + P + ++A G Sbjct: 878 GRRLTHNGTQFATLGAL-----VTAQHNRQNS---KVILNPKIITEDNKTAELFVGINTR 929 Query: 295 YKTVSSSTGATSVTT-----HDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIG--- 342 ++T S S SV T D G + TP + + + L I+ EVS + V G Sbjct: 930 FQTNSISNDEGSVITTNFEYRDVGTTIRVTPLIGNGDIVTLEIEEEVSRVAPQAVQGGSD 989 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + + P+ + + TTV +P ++++GL++D+ + P L IPI+GA F Sbjct: 990 IQDPNAPTTSISRTSTTVHVPDRHFVIISGLIQDEKIHSRNQFPCLGGIPIIGAAF 1045 >gi|222084464|ref|YP_002542993.1| hypothetical protein Arad_0357 [Agrobacterium radiobacter K84] gi|221721912|gb|ACM25068.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 139 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +L++ V V+V + AD V P+T+ L G++ G N++L+ DG +++ IL+ Sbjct: 41 VLKLDRPVSKVIVGNAQVADATVADPKTIVLTGRSFGTTNIVLLDADGNAIVDERILVSI 100 Query: 119 D 119 D Sbjct: 101 D 101 >gi|187919918|ref|YP_001888949.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia phytofirmans PsJN] gi|187718356|gb|ACD19579.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia phytofirmans PsJN] Length = 637 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 8/176 (4%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 +H LE++ R L+ P + ++ A +S LY V+ + + D G+ L T Sbjct: 405 IHLLEQSGKARILSRPQVLTLNNSEAILSSR-NSLYVRVAGNQD-VDLYNVDTGLTLKVT 462 Query: 320 PTVLSPG----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PTV S I L +Q + ++ +P T + G +++L G Sbjct: 463 PTVESGSDSARNILLSVQIDDGAFDSSLSVDGIPKVNNHSIVTQAVVADGESLLLGGYEY 522 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + Q + +L +P +GALFR+++ E E I TP VKP+ ++ ++ PD Sbjct: 523 ERSQTASSQVHVLGHLPYVGALFRDTQTQVERLERLILITPR-VKPM-VKLVTEPD 576 >gi|85058539|ref|YP_454241.1| type III secretion apparatus InvG [Sodalis glossinidius str. 'morsitans'] gi|84779059|dbj|BAE73836.1| type III secretion apparatus InvG [Sodalis glossinidius str. 'morsitans'] Length = 586 Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 ++P + T +P G ++++ G +D GIP+L IP LG LF + Sbjct: 473 AELPLVNTTQISTEARVPKGSSLLVGGYSRDQRVNAGWGIPVLRDIPFLGRLF---DYRY 529 Query: 406 EETEIFIAATPFLVKP 421 ++T+ F+ FL++P Sbjct: 530 KQTKQFVRM--FLIQP 543 >gi|51103005|gb|AAT96152.1| HrcC [Pseudomonas viridiflava] Length = 697 Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 10/191 (5%) Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQH 293 GG + + G S + + F LHALE + + P++ + Q A S ++ Sbjct: 348 GGVNMFDAGTTSTLFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY 407 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPS 350 + T +T G L P L G+ +++ ++ + I V+ D PS Sbjct: 408 ITATSERVANIEPITA---GTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDVSDINADQPS 464 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ET 408 R T + G++V+ G + IPLL IP +G L SR +RE Sbjct: 465 VRKGNVSTQAVIAEHGSLVVGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSR-SREINHR 523 Query: 409 EIFIAATPFLV 419 E TP L+ Sbjct: 524 ERLFILTPRLI 534 >gi|150026329|ref|YP_001297155.1| general secretion pathway protein D precursor [Flavobacterium psychrophilum JIP02/86] gi|149772870|emb|CAL44354.1| Putative bacterial general secretion pathway protein D precursor [Flavobacterium psychrophilum JIP02/86] Length = 720 Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust. Identities = 42/194 (21%), Positives = 83/194 (42%), Gaps = 21/194 (10%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG--------GQHL 294 G ++ V+ F+ L A+E ++ + P L+ ++G A + G Q+ Sbjct: 535 GSLNIGSVVPNFNLS--LKAMESNGNLKIRSAPRLSTLNGHKAYLSIGETTYYVVTNQNF 592 Query: 295 YKT-VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPS 350 Y + + ++ + D + + P V G+I + I Q+ + + NA P Sbjct: 593 YGSQIPQTSEVKNYQPIDAELSVTIMPLVSGDGQITMDIKVIQSSFNGQKVDKNAP--PG 650 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+ + + + IVL GL + G+P+L++IPI+ LF + + RE++ Sbjct: 651 INSREFTSIIRVKDQDLIVLGGLEEKVKNDSGSGVPILARIPIIKWLFSSRK--REDSN- 707 Query: 411 FIAATPFLVKPVAM 424 L+KP + Sbjct: 708 --KKLTVLIKPTVI 719 >gi|82524589|ref|YP_406184.1| MxiD [Shigella dysenteriae Sd197] gi|81243987|gb|ABB64696.1| MxiD [Shigella dysenteriae Sd197] Length = 566 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253 + L + I ++ + L +G T S F FG F +S S LD Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F + AL + ++ P + A F + V + T YG Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407 Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P S G+I + + E + N +P K T +P G Sbjct: 408 TLINVIPRFSSRGQIEMSLTIEDGTGNSLSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G + IP LS IP++G +F+ + + I FL++P +++ Sbjct: 468 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 522 Query: 427 LS 428 S Sbjct: 523 SS 524 >gi|148826860|ref|YP_001291613.1| putative phage-like secreted protein [Haemophilus influenzae PittGG] gi|148718102|gb|ABQ99229.1| putative phage-related secreted protein [Haemophilus influenzae PittGG] Length = 377 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 10/155 (6%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-HLYKTVSSSTGATSVTTHDY- 312 + + ++ + ++ PTL SG +F+ G + V+ +V + +Y Sbjct: 214 NLDAMIELFRTDSRFHVVSSPTLRVKSGSKGNFSVGSDVPVLGAVTYDRDGRAVQSIEYR 273 Query: 313 --GVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGT 367 GV+ PT+ + I L+I ++S V GVN P+ R T V L SG Sbjct: 274 SSGVIFDIQPTIKNNA-IDLKINQQLSNFVKTDTGVNQS--PTLIKRDIVTDVTLKSGDI 330 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +VL GL ++ I + + G L K + G NS+ Sbjct: 331 VVLGGLAENKITEGETGFSFLPKGILSGRSKSNSK 365 >gi|62297323|sp|P35819|PILQ_NEIGO RecName: Full=Type IV pilus biogenesis and competence protein pilQ; AltName: Full=Outer membrane protein omc; Flags: Precursor gi|1173875|gb|AAC43603.1| PilQ [Neisseria gonorrhoeae] gi|1589217|prf||2210365A pilQ gene Length = 720 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + + S G S T VL T Sbjct: 558 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLT 617 Query: 320 PTV-LSP-GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 T ++P G+I + ++ P + + + + +T + +GGT+++ G+ ++ Sbjct: 618 VTANITPDGQIIMTVKINKDSPRQCASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEE 677 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + +PLL+ P+ ++S NR Sbjct: 678 NNGNTLTKVPLLATSPLSATSLKHSGKNR 706 >gi|51103060|gb|AAT96206.1| HrcC [Pseudomonas viridiflava] Length = 697 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 10/191 (5%) Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQH 293 GG + + G S + + F LHALE + + P++ + Q A S ++ Sbjct: 348 GGVNMFDAGTTSTLFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY 407 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPS 350 + T +T G L P L G+ +++ ++ + I V+ D PS Sbjct: 408 ITATSERVANIEPITA---GTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDVSDINADQPS 464 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ET 408 R T + G++V+ G + IPLL IP +G L SR +RE Sbjct: 465 VRKGNVSTQAVIAEHGSLVVGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSR-SREINHR 523 Query: 409 EIFIAATPFLV 419 E TP L+ Sbjct: 524 ERLFILTPRLI 534 >gi|32307038|gb|AAP79008.1| MxiD [Shigella flexneri] Length = 566 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 44/213 (20%), Positives = 76/213 (35%), Gaps = 20/213 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253 + L + I ++ + L +G T S F FG F +S S LD Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F + AL + ++ P + A F + V + T YG Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407 Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P S G+I + + E + N +P K T +P G Sbjct: 408 TLINVIPRFSSQGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++++ G + IP LS IP++G +F+ Sbjct: 468 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK 500 >gi|326794354|ref|YP_004312174.1| type III secretion outer membrane pore, YscC/HrcC family [Marinomonas mediterranea MMB-1] gi|326545118|gb|ADZ90338.1| type III secretion outer membrane pore, YscC/HrcC family [Marinomonas mediterranea MMB-1] Length = 713 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 11/236 (4%) Query: 190 IAGEDQ----VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 IA DQ + + I ++ R+ L ++GF G S F+ G Sbjct: 319 IAQLDQPRHVIEIDAIILDIDREKLSELGFNWQ--GGSGNTEAKINTSGADPFLKSGSSA 376 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 +V + D F + ALE +A P++ I Q A K+ Sbjct: 377 TVT-IQDFDHFFAQIRALETDGDASLVANPSILTIENQPAIIDFNNTAFIKSTGERVANV 435 Query: 306 SVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELP 363 S T G L P ++ S +++ ++ + I N+G D PS T + Sbjct: 436 SEITA--GTSLQVLPRLIDSEAERVIQLFLDIEDGDIESNSGADTPSVSKGSISTQAVIK 493 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + ++V+ G + Q + +PLL +P +G LF + + E TP LV Sbjct: 494 TERSLVIGGFKVEQNTQRESKVPLLGDLPGIGKLFSYTSKAHSKRERLFIITPRLV 549 >gi|89885888|ref|YP_516086.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89347886|gb|ABD72088.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 622 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 124/300 (41%), Gaps = 36/300 (12%) Query: 146 VLHGMVRTIQDSQRAVEL--SETFLSQSGRNQY--ANSSSKKVMN--LLNI-AGEDQVTL 198 V GM TI V+L S+ +L + GR+ AN S+ + ++ L N+ + Sbjct: 141 VFAGMANTI------VKLGASDAYLDRQGRSLTFRANRSAMRGIDRFLENVRETRSLIVF 194 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--DFGGKFVSEGGDFSVKGVL--DRF 254 I EV Q G + + + GP S A GG V++ G + RF Sbjct: 195 DTYIYEVNLTDGAQTGIKWNKLAMAIGPGGSLGALGAVGGSTVADSGGMGFSAIYKGSRF 254 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSST-GATSVTT 309 + L+ ++T+A+P + +SG F +G Y T SS+T T+V+T Sbjct: 255 DLDAFFSFLQTQGNVKTIAQPKIAIMSGSKGGFKAGSTTKYVSQVGTNSSTTINQTTVST 314 Query: 310 HDY--GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTV 360 G+ L T V S G + RI+ +SE +I N+ + +P R+ T + Sbjct: 315 DTAVSGLDLSLTGDV-SDGTVYARIRISLSE-LIRFNSFEALGTSLQLPQTTSRELTTAI 372 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G ++L G+ G+P K +L N + R TE+ + P +V+ Sbjct: 373 RARPGDVVLLGGVNNSSESSDYSGLP-GEKGQMLVPTSSNKKVAR--TELVMVMKPKIVR 429 >gi|182440996|dbj|BAG24121.1| HrcC [Pseudomonas cichorii] Length = 672 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 10/197 (5%) Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 +++ + +FG ++ G DRF + + ALE +A P++ + Q A Sbjct: 324 ARAGSVNFGSSLLTGGSATLSISDFDRFFAD--IQALEGQGGASVIARPSVLTLENQPAV 381 Query: 287 FT-SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIG 342 S ++ T SVT G L P ++ R L I E + + Sbjct: 382 IDFSRTAYITATGERVANVQSVTA---GTSLQVIPRTIAGAQANRFQLIIDIEDGQ-LDR 437 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G+ P + T + ++V+ G D+ Q + +PLL +P+LG LF + R Sbjct: 438 SRDGETPDVKRGTVSTQAVISENRSLVIGGFHVDETGQHHDKVPLLGDLPVLGPLFTSKR 497 Query: 403 FNREETEIFIAATPFLV 419 E TP L+ Sbjct: 498 QEVSRRERLFILTPRLI 514 >gi|15963890|ref|NP_384243.1| hypothetical protein SMc04115 [Sinorhizobium meliloti 1021] gi|307315787|ref|ZP_07595301.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] gi|307320422|ref|ZP_07599839.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|15073065|emb|CAC41524.1| Hypothetical protein SMc04115 [Sinorhizobium meliloti 1021] gi|306893988|gb|EFN24757.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306898555|gb|EFN29228.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] Length = 138 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +L++ V V++ + AD V +T+ L G+N G N++++ DG M++ IL+ Sbjct: 43 VLKLDRPVSKVIIGNAEVADATVADAKTIVLTGRNFGTTNLVILDQDGNAMVDERILVSI 102 Query: 119 D 119 D Sbjct: 103 D 103 >gi|45504747|gb|AAS66838.1| YsaC [Sodalis glossinidius] Length = 500 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 ++P + T +P G ++++ G +D GIP+L IP LG LF + Sbjct: 387 AELPLVNTTQISTEARVPKGSSLLVGGYSRDQRVNAGWGIPVLRDIPFLGRLF---DYRY 443 Query: 406 EETEIFIAATPFLVKP 421 ++T+ F+ FL++P Sbjct: 444 KQTKQFVRM--FLIQP 457 >gi|333011815|gb|EGK31216.1| hypothetical protein SFK227_5449 [Shigella flexneri K-227] gi|333011862|gb|EGK31255.1| hypothetical protein SFK227_5390 [Shigella flexneri K-227] Length = 566 Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253 + L + I ++ + L +G T S F FG F +S S LD Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F + AL + ++ P + A F + V + T YG Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407 Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P S G+I + + E + N +P K T +P G Sbjct: 408 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G + IP LS IP++G +F+ + + I FL++P +++ Sbjct: 468 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 522 Query: 427 LS 428 S Sbjct: 523 SS 524 >gi|187734437|ref|YP_001883208.1| type III secretion outer membrane protein MxiD [Shigella boydii CDC 3083-94] gi|187426933|gb|ACD06208.1| type III secretion outer membrane protein MxiD [Shigella boydii CDC 3083-94] Length = 566 Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253 + L + I ++ + L +G T S F FG F +S S LD Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F + AL + ++ P + A F + V + T YG Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407 Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P S G+I + + E + N +P K T +P G Sbjct: 408 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G + IP LS IP++G +F+ + + I FL++P +++ Sbjct: 468 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 522 Query: 427 LS 428 S Sbjct: 523 SS 524 >gi|330957480|gb|EGH57740.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. maculicola str. ES4326] Length = 703 Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 24/246 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+++ + + + I ++ R+ L ++ + + S G GG + + Sbjct: 311 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNMFD 360 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSS 300 G S + + F LH LE + + P++ + Q A S ++L T Sbjct: 361 AGTTSTMFIQNAGKFTAELHTLEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTATSER 420 Query: 301 STGATSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKAD 357 +T G L TP L + G+ +++ ++ + I ++ PS R Sbjct: 421 VANIEPITA---GTSLQVTPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVS 477 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR----FNREETEIFIA 413 T + G++V+ G + IPLL IP +G L SR NRE +FI Sbjct: 478 TQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSNRE--RLFI- 534 Query: 414 ATPFLV 419 TP L+ Sbjct: 535 LTPRLI 540 >gi|194435190|ref|ZP_03067420.1| type III secretion outer membrane pore, YscC/HrcC family [Shigella dysenteriae 1012] gi|194416569|gb|EDX32708.1| type III secretion outer membrane pore, YscC/HrcC family [Shigella dysenteriae 1012] Length = 566 Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253 + L + I ++ + L +G T S F FG F +S S LD Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F + AL + ++ P + A F + V + T YG Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407 Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P S G+I + + E + N +P K T +P G Sbjct: 408 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G + IP LS IP++G +F+ + + I FL++P +++ Sbjct: 468 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 522 Query: 427 LS 428 S Sbjct: 523 SS 524 >gi|74314944|ref|YP_313362.1| MxiD [Shigella sonnei Ss046] gi|73858421|gb|AAZ91127.1| MxiD [Shigella sonnei Ss046] Length = 566 Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253 + L + I ++ + L +G T S F FG F +S S LD Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F + AL + ++ P + A F + V + T YG Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407 Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P S G+I + + E + N +P K T +P G Sbjct: 408 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G + IP LS IP++G +F+ + + I FL++P +++ Sbjct: 468 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 522 Query: 427 LS 428 S Sbjct: 523 SS 524 >gi|2495097|sp|Q55293|MXID_SHISO RecName: Full=Outer membrane protein mxiD; Flags: Precursor gi|829072|dbj|BAA09154.1| ORF14 [Shigella sonnei] Length = 566 Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253 + L + I ++ + L +G T S F FG F +S S LD Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F + AL + ++ P + A F + V + T YG Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407 Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P S G+I + + E + N +P K T +P G Sbjct: 408 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G + IP LS IP++G +F+ + + I FL++P +++ Sbjct: 468 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 522 Query: 427 LS 428 S Sbjct: 523 SS 524 >gi|83816469|ref|YP_445404.1| general (Type II) secretion pathway (GSP) D protein, putative [Salinibacter ruber DSM 13855] gi|83757863|gb|ABC45976.1| general (Type II) secretion pathway (GSP) D protein, putative [Salinibacter ruber DSM 13855] Length = 426 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 41/187 (21%), Positives = 74/187 (39%), Gaps = 23/187 (12%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L+ +E+ RT+A P +T SG+ GQ + + G T G++ Sbjct: 194 FRRFLNLVEQDNVGRTVANPQVTVQSGEQGEIQI-GQDVPIQTTDFAGNTVTEFFSTGII 252 Query: 316 LHFTPTVLSPG-------------RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 + TPT+LS + + ++ S+P +G P +A T + L Sbjct: 253 IDVTPTLLSQPVADTSGAPVLDFIHLNVDVEDSNSQP-----SGSGPIINRNQASTQILL 307 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIP--ILGA--LFRNSRFNREETEIFIAATPFL 418 + GL+ + G+P+L +P + G +F + N + E+ I + Sbjct: 308 LDNEATAIGGLISTQKTTRRSGVPILKDLPGWVFGLRYIFGSETTNVTKQELLIVLRAEI 367 Query: 419 VKPVAMR 425 V P+ R Sbjct: 368 VDPLRAR 374 >gi|144897438|emb|CAM74302.1| conserved hypothetical protein, secreted [Magnetospirillum gryphiswaldense MSR-1] Length = 138 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 30/52 (57%) Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 V V++ DP ADV V S + LFGK G ++ ++G +G +L+ +++ Sbjct: 40 VAQVVIGDPKVADVSVDSAGRIQLFGKRAGSTSLTVLGRNGAVLLDHTVVVR 91 >gi|323166425|gb|EFZ52190.1| hypothetical protein SS53G_3269 [Shigella sonnei 53G] Length = 476 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253 + L + I ++ + L +G T S F FG F +S S LD Sbjct: 210 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 259 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F + AL + ++ P + A F + V + T YG Sbjct: 260 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 317 Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P S G+I + + E + N +P K T +P G Sbjct: 318 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 377 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G + IP LS IP++G +F+ + + I FL++P +++ Sbjct: 378 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 432 Query: 427 LS 428 S Sbjct: 433 SS 434 >gi|31983567|ref|NP_858278.1| outermembrane protein MxiD [Shigella flexneri 2a str. 301] gi|18462559|gb|AAL72331.1| MxiD, outermembrane protein of the secretin family, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] gi|281603900|gb|ADA76883.1| MxiD, outermembrane protein of the secretin family, component of the Mxi-Spa secretion machinery [Shigella flexneri 2002017] gi|333003155|gb|EGK22704.1| hypothetical protein SFK218_2878 [Shigella flexneri K-218] gi|333020387|gb|EGK39651.1| hypothetical protein SFK304_1148 [Shigella flexneri K-304] Length = 566 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 52/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFS 246 L+IA + + L + I ++ + L +G T S F FG F +S S Sbjct: 294 LDIA-KRHIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIS 345 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 LD F + AL + ++ P + A F + V + Sbjct: 346 T---LDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLE 402 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTT 359 T YG +++ P S G+I + + E + N +P K T Sbjct: 403 HVT--YGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTI 460 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P G ++++ G + IP LS IP++G +F+ + + I FL+ Sbjct: 461 ARVPQGKSLLIGGYTHETNSNEIISIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLI 515 Query: 420 KPVAMRDLS 428 +P +++ S Sbjct: 516 QPREIKESS 524 >gi|6016255|sp|Q01723|HRPH_PSESY RecName: Full=Hypersensitivity response secretion protein hrpH; Flags: Precursor gi|2934881|gb|AAC05014.1| envelope protein [Pseudomonas syringae] gi|148746178|gb|AAB05085.2| HrcC [Pseudomonas syringae pv. syringae] Length = 701 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 54/246 (21%), Positives = 102/246 (41%), Gaps = 24/246 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGK-FV 239 +K++ L+++ + + + I ++ R+ L ++ + + GS +G + F A F+ Sbjct: 309 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVNGGANMFDAGTSSTLFI 367 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTV 298 G F+ + LHALE + + P++ + Q A S ++L T Sbjct: 368 QNAGKFAAE-----------LHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTATS 416 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRK 355 +T G L TP L G+ +++ ++ + I ++ PS R Sbjct: 417 ERVANIEPITA---GTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGN 473 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIA 413 T + G++V+ G + +PLL IP +G L SR +RE + E Sbjct: 474 VSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSR-SRELSQRERLFI 532 Query: 414 ATPFLV 419 TP L+ Sbjct: 533 LTPRLI 538 >gi|85059260|ref|YP_454962.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] gi|84779780|dbj|BAE74557.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 494 Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 30/227 (13%) Query: 190 IAGEDQ----VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKF---VS 240 IA DQ + + V I +V + ++G S S G SF +D G F +S Sbjct: 258 IAALDQRPQMIEIAVMIIDVDVGDINKLGIDWSGAMSLGGSGFSFNSDGDIRGGFSSVIS 317 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 DF V+ L+ LE+ L++P++ ++ A Y + Sbjct: 318 NTNDFMVR-----------LNVLEQRAHAYILSQPSVVTLNNIQAVLDKNVT-FYTKLQG 365 Query: 301 STGAT--SVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 A SVTT G +L TP ++ I L + + + ++A D +P + Sbjct: 366 DKFAKLESVTT---GSLLRVTPRLMEDQGKQNIMLSLNIQDGQQTSPLSATDPLPQVQNS 422 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + L G +++L G +D +Q ++ IPLL IP+LG LFR+S Sbjct: 423 EIASQATLRPGQSLLLGGFQQDKQKQGQKKIPLLGDIPLLGHLFRSS 469 >gi|331015110|gb|EGH95166.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 699 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 19/230 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + I ++ R+ L ++ + + S G GG + + G S + + Sbjct: 320 IEIDAVILDIDRNELAELSSRWNFNTGSVG---------GGANLFDAGTSSTLFLQNASK 370 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSSSTGATSVTTHDYGV 314 F LHALE + + P++ + Q A S ++L T + +T G Sbjct: 371 FSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTATSERAADILPITA---GT 427 Query: 315 VLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLA 371 L P L + G+ +++ ++ + I V+ PS R T + G++V+ Sbjct: 428 SLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVSTQAVIAEHGSLVIG 487 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419 G + IPLL IP +G L SR +RE + E TP L+ Sbjct: 488 GFHGLEANDRIHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILTPRLI 536 >gi|66044451|ref|YP_234292.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. syringae B728a] gi|63255158|gb|AAY36254.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. syringae B728a] Length = 700 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 10/191 (5%) Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQH 293 GG + + G S + + F LHALE + + P++ + Q A S ++ Sbjct: 351 GGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY 410 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPS 350 L T +T G L TP L G+ +++ ++ + I ++ PS Sbjct: 411 LTATSERVANIEPITA---GTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPS 467 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ET 408 R T + G++V+ G + +PLL IP +G L SR +RE + Sbjct: 468 VRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSR-SRELSQR 526 Query: 409 EIFIAATPFLV 419 E TP L+ Sbjct: 527 ERLFILTPRLI 537 >gi|120586851|ref|YP_961196.1| YscC/HrcC family type III secretion outer membrane protein [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564265|gb|ABM30008.1| type III secretion outer membrane pore, YscC/HrcC family [Desulfovibrio vulgaris DP4] Length = 624 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 37/73 (50%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P + K +T + +G ++++ G + +G+P+L IP+LG LF+ + Sbjct: 465 IPPIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKR 524 Query: 408 TEIFIAATPFLVK 420 E I TP +V+ Sbjct: 525 MERLILITPKVVR 537 >gi|309586|gb|AAA25456.1| outer membrane protein [Neisseria gonorrhoeae] Length = 711 Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A E + +TLA P + + + A SG + + + S G S T VL T Sbjct: 549 LSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLT 608 Query: 320 PTV-LSP-GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 T ++P G+I + ++ P + + + + +T + +GGT+++ G+ ++ Sbjct: 609 VTANITPDGQIIMTVKINKDSPRQCASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEE 668 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + +PLL+ P+ ++S NR Sbjct: 669 NNGNTLTKVPLLATSPLSATSLKHSGKNR 697 >gi|46562147|ref|YP_009152.1| type III secretion system protein YscC family [Desulfovibrio vulgaris str. Hildenborough] gi|46447684|gb|AAS94350.1| type III secretion system protein, YscC family [Desulfovibrio vulgaris str. Hildenborough] Length = 624 Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 37/73 (50%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P + K +T + +G ++++ G + +G+P+L IP+LG LF+ + Sbjct: 465 IPPIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKR 524 Query: 408 TEIFIAATPFLVK 420 E I TP +V+ Sbjct: 525 MERLILITPKVVR 537 >gi|330895850|gb|EGH28136.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. japonica str. M301072PT] Length = 640 Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust. Identities = 54/246 (21%), Positives = 102/246 (41%), Gaps = 24/246 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGK-FV 239 +K++ L+++ + + + I ++ R+ L ++ + + GS +G + F A F+ Sbjct: 248 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVNGGANMFDAGTSSTLFI 306 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTV 298 G F+ + LHALE + + P++ + Q A S ++L T Sbjct: 307 QNAGKFAAE-----------LHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTATS 355 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRK 355 +T G L TP L G+ +++ ++ + I ++ PS R Sbjct: 356 ERVANIEPITA---GTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGN 412 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIA 413 T + G++V+ G + +PLL IP +G L SR +RE + E Sbjct: 413 VSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGKLLFQSR-SRELSQRERLFI 471 Query: 414 ATPFLV 419 TP L+ Sbjct: 472 LTPRLI 477 >gi|13449092|ref|NP_085308.1| Type III secretion protein [Shigella flexneri 5a] gi|547951|sp|Q04641|MXID_SHIFL RecName: Full=Outer membrane protein mxiD; Flags: Precursor gi|13310640|gb|AAK18464.1|AF348706_153 Type III secretion protein [Shigella flexneri 5a] gi|47042|emb|CAA47644.1| MXID [Shigella flexneri] gi|12329089|emb|CAC05820.1| MxiD, outermembrane protein of the secretin family, component of the Mxi-Spa secretion machinery [Shigella flexneri] Length = 566 Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253 + L + I ++ + L +G T S F FG F +S S LD Sbjct: 300 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 349 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F + AL + ++ P + A F + V + T YG Sbjct: 350 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 407 Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P S G+I + + E + N +P K T +P G Sbjct: 408 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 467 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G + IP LS IP++G +F+ + + I FL++P +++ Sbjct: 468 SLLIGGYTHETNSNEIISIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 522 Query: 427 LS 428 S Sbjct: 523 SS 524 >gi|171316796|ref|ZP_02906007.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] gi|171098054|gb|EDT42870.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] Length = 598 Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust. Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 17/232 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + ++ + EV L+QIG G +G F A G + GD S + ++ Sbjct: 376 IEIEAHVIEVDETALRQIGVNWGARSKHVGLQTGGGAPFGASTGNTLTAVVGD-SGRYLM 434 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTH 310 R + L+ R A P + + A + + + ++G SV+T Sbjct: 435 GRINL------LQLENKARLDASPKVATLDNVEAIMDNRSRFFVRVSGHTSGQLYSVST- 487 Query: 311 DYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368 G+ L P V++ GR +++ + + I D +P T + ++ Sbjct: 488 --GISLRVLPMVMNENGRQYIKLAVNIDDGQITNRTVDNIPIVNSSSIRTQAVIGKDESL 545 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++AG + + G+P LSKIP++GALFR S + + + TP +++ Sbjct: 546 LIAGYRVEGRSEGTFGVPGLSKIPVVGALFRQSESSARKMDRIFLLTPRIIE 597 >gi|118579256|ref|YP_900506.1| type II and III secretion system protein [Pelobacter propionicus DSM 2379] gi|118501966|gb|ABK98448.1| type II and III secretion system protein [Pelobacter propionicus DSM 2379] Length = 767 Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 38/66 (57%) Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 K + TV G T+ + G+++ +I + +PLL IP LG F+ + + +TE+ + Sbjct: 517 KLEGTVLAQDGMTVAVGGMMRTNITDYESKVPLLGDIPYLGFFFKQKQKIKTKTELVLLI 576 Query: 415 TPFLVK 420 TP++++ Sbjct: 577 TPYILQ 582 >gi|330975856|gb|EGH75922.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 702 Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust. Identities = 54/246 (21%), Positives = 102/246 (41%), Gaps = 24/246 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGK-FV 239 +K++ L+++ + + + I ++ R+ L ++ + + GS +G + F A F+ Sbjct: 310 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVNGGANMFDAGTSSTLFI 368 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTV 298 G F+ + LHALE + + P++ + Q A S ++L T Sbjct: 369 QNAGKFAAE-----------LHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTATS 417 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRK 355 +T G L TP L G+ +++ ++ + I ++ PS R Sbjct: 418 ERVANIEPITA---GTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGN 474 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIA 413 T + G++V+ G + +PLL IP +G L SR +RE + E Sbjct: 475 VSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGKLLFQSR-SRELSQRERLFI 533 Query: 414 ATPFLV 419 TP L+ Sbjct: 534 LTPRLI 539 >gi|213026060|ref|ZP_03340507.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 173 Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 13/170 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTHDYGV 314 F L+ALE+++ L++P++ ++ A K S+TT G Sbjct: 1 FMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITT---GS 57 Query: 315 VLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVL 370 +L TP +L+ +I L + + + + D +P + + + L +G +++L Sbjct: 58 LLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLL 117 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G + + IPLL IP++G LFRN + T++ FL+K Sbjct: 118 GGFKQGKQIHSQNKIPLLGDIPVVGHLFRN-----DTTQVHSVIRLFLIK 162 >gi|82795284|gb|ABB91653.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tagetis] Length = 699 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 10/191 (5%) Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQH 293 GG + + G S + + F LHALE + + P++ + Q A S ++ Sbjct: 350 GGASLFDAGTSSTMFIQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY 409 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA--GDMPS 350 L T + +T G L P L G+ +++ ++ + I V+ PS Sbjct: 410 LTATSERAAEILPITA---GTSLQVIPRSLDHDGKPQVQMIVDIEDGQIDVSTINDTQPS 466 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ET 408 R T + G++V+ G + IPLL IP +G L SR +RE + Sbjct: 467 VRRGNVSTQAVIAEHGSLVVGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSR-SRELSQR 525 Query: 409 EIFIAATPFLV 419 E TP L+ Sbjct: 526 ERLFILTPRLI 536 >gi|330969113|gb|EGH69179.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. aceris str. M302273PT] Length = 700 Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 10/191 (5%) Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQH 293 GG + + G S + + F LHALE + + P++ + Q A S ++ Sbjct: 351 GGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY 410 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPS 350 L T +T G L TP L G+ +++ ++ + I ++ PS Sbjct: 411 LTATSERVANIEPITA---GTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPS 467 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ET 408 R T + G++V+ G + +PLL IP +G L SR +RE + Sbjct: 468 VRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSR-SRELSQR 526 Query: 409 EIFIAATPFLV 419 E TP L+ Sbjct: 527 ERLFILTPRLI 537 >gi|311235499|gb|ADP88352.1| type III secretion outer membrane pore, YscC/HrcC family [Desulfovibrio vulgaris RCH1] Length = 696 Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 37/73 (50%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P + K +T + +G ++++ G + +G+P+L IP+LG LF+ + Sbjct: 537 IPPIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKR 596 Query: 408 TEIFIAATPFLVK 420 E I TP +V+ Sbjct: 597 MERLILITPKVVR 609 >gi|221235980|ref|YP_002518417.1| CpaC-like secretion pathway protein [Caulobacter crescentus NA1000] gi|220965153|gb|ACL96509.1| CpaC-related secretion pathway protein [Caulobacter crescentus NA1000] Length = 143 Score = 37.4 bits (85), Expect = 4.9, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 34/54 (62%) Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V+D++V DP+ ADV V + RT+ + GK G +++ G +G+ + + +++ + Sbjct: 58 VRDIVVGDPSIADVSVVNDRTLVVLGKRPGVTSLLAFGANGRPLADRQVVVSEN 111 >gi|237799995|ref|ZP_04588456.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022850|gb|EGI02907.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. oryzae str. 1_6] Length = 700 Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 23/232 (9%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGK-FVSEGGDFSVKGVLDR 253 + + I ++ R+ L ++ + + GS SG + F A F+ G F+ + Sbjct: 321 IEIDAVILDIDRNELAELSSRWNFNAGSVSGGANLFDAGTSSTLFIQNAGKFAAE----- 375 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSSSTGATSVTTHDY 312 LHALE + + P++ + Q A S ++L T + +T Sbjct: 376 ------LHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTATSERAAEILPITA--- 426 Query: 313 GVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIV 369 G L P L G+ +++ ++ + I V+ PS R T + G++V Sbjct: 427 GTSLQVIPRSLDHDGKSQVQMIVDIEDGQIDVSTINDTQPSVRRGNVSTQAMIAEHGSLV 486 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419 + G + +PLL IP +G L SR +RE + E TP L+ Sbjct: 487 IGGFHGLEANDRIHKVPLLGDIPYIGKLLFQSR-SRELSQRERLFILTPRLI 537 >gi|50508104|dbj|BAD30080.1| outer-membrane protein of Hrp(typeIII) secretion pathway [Pseudomonas syringae pv. tabaci] Length = 699 Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust. Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 20/244 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+++ + + + I ++ R+ L ++ + + S G GG + + Sbjct: 307 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSS 300 G S + + F LHALE + + P++ + Q A S +++ T Sbjct: 357 AGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYITATSER 416 Query: 301 STGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKAD 357 +T G L P L G+ +++ ++ + I ++ PS R Sbjct: 417 VANIEPITA---GTSLQVIPRSLDHDGKPQVQLSVDIEDGQIDISDINDTQPSVRKGNVS 473 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAAT 415 T + G++V+ G + IPLL IP +G L SR +RE + E T Sbjct: 474 TQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILT 532 Query: 416 PFLV 419 P L+ Sbjct: 533 PRLI 536 >gi|329891000|ref|ZP_08269343.1| pilQ [Brevundimonas diminuta ATCC 11568] gi|328846301|gb|EGF95865.1| pilQ [Brevundimonas diminuta ATCC 11568] Length = 129 Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/83 (21%), Positives = 44/83 (53%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 AA++ ++ + + + + + L++ +Q+ V+V++P ADV V RT+++ GK+ Sbjct: 11 AALLVLTAPAVAQERPLDVKLDQATRVQLRAPAGSVIVANPRIADVTVTDARTLFITGKS 70 Query: 94 VGQANVILIGHDGKQMLNLDILI 116 G +I + G+ + + + Sbjct: 71 YGLTEIIAVDALGRPLFQRQVAV 93 >gi|317486813|ref|ZP_07945629.1| YscC/HrcC family type III secretion outer membrane pore [Bilophila wadsworthia 3_1_6] gi|316921976|gb|EFV43246.1| YscC/HrcC family type III secretion outer membrane pore [Bilophila wadsworthia 3_1_6] Length = 614 Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 81/215 (37%), Gaps = 36/215 (16%) Query: 237 KFVSEGGDFSVKGVLDRFS-------------------------FETVLHALERATAIRT 271 K S GG+FS G D+FS F + ALE R Sbjct: 327 KGWSTGGEFS--GTGDKFSPLPTMGTPSGTGMNLSTIYTHGADFFLARIQALEAEGEARM 384 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 L P++ + A+ + + + A + + G VL TP ++ R Sbjct: 385 LGRPSVLTVDNVQATLENTSTYYIQV--EGYQAVDLFKVEAGTVLRVTPHIIRNERGQTS 442 Query: 332 IQTEVS-------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 I+ VS V+ +P + K +T + +G ++++ G + G Sbjct: 443 IKLAVSVQDDQNDSKDAPVSDNSVPPIKQTKINTQAIVGAGQSLLIGGYYYEQKSTDASG 502 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+L IP+LG LF+ + + E I TP ++ Sbjct: 503 IPILMHIPVLGNLFKTTSKGTKRMERLILITPKVI 537 >gi|330984958|gb|EGH83061.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. lachrymans str. M301315] Length = 703 Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust. Identities = 54/246 (21%), Positives = 101/246 (41%), Gaps = 24/246 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+++ + + + I ++ R+ L ++ + + S G GG + + Sbjct: 311 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNMFD 360 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSS 300 G S + + F LH LE + + P++ + Q A S ++L T Sbjct: 361 AGTTSTMFIQNAGKFTAELHTLEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTATSER 420 Query: 301 STGATSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKAD 357 +T G L TP L + G+ +++ ++ + I ++ PS R Sbjct: 421 VANIEPITA---GTSLQVTPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVS 477 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR----FNREETEIFIA 413 T + G++V+ G + +PLL IP +G L SR NRE +FI Sbjct: 478 TQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSNRE--RLFI- 534 Query: 414 ATPFLV 419 TP L+ Sbjct: 535 LTPRLI 540 >gi|323186572|gb|EFZ71915.1| hypothetical protein ECOK1357_0057 [Escherichia coli 1357] Length = 367 Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 25/242 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKGVLDR 253 + L + I ++ + L +G T S F FG F +S S LD Sbjct: 101 HIELSLWIIDIDKSELNNLGVNWQGTAS-------FGDSFGASFNMSSSASIST---LDG 150 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F + AL + ++ P + A F + V + T YG Sbjct: 151 NKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERNSSLEHVT--YG 208 Query: 314 VVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 +++ P S G+I + + E + N +P K T +P G Sbjct: 209 TLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQGK 268 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G + IP LS IP++G +F+ + + I FL++P +++ Sbjct: 269 SLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFK-----YKTSNISNIVRVFLIQPREIKE 323 Query: 427 LS 428 S Sbjct: 324 SS 325 >gi|290985628|ref|XP_002675527.1| predicted protein [Naegleria gruberi] gi|284089124|gb|EFC42783.1| predicted protein [Naegleria gruberi] Length = 452 Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 23/155 (14%) Query: 243 GDFSVKGVLDRFSFETVLHALE-RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G+F+V +F V H +E T+I + E + + GQ + LY V S Sbjct: 112 GEFTVYNSQKQF----VSHHVESEGTSIVSGFEKIIEFLPGQYDA------DLYNLVLSY 161 Query: 302 TGATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + +T+ DYG V+ T +V S GRI +Q+E+S+ ++G A MP R Sbjct: 162 FGDSVLTSVDYGGVVDLTSSVRSCFSDGRIQQFVQSELSD-IVGQAAESMPDSYARYHKV 220 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + GG +I +++ IP S P+ Sbjct: 221 SQMDIVGG--------NPEISDIRQRIPTFSANPV 247 >gi|123443735|ref|YP_001007706.1| type III secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090696|emb|CAL13572.1| possible type III secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 563 Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P +T + ++++ G +D +++ + IPLLS IP+LG LF+ N+++ Sbjct: 452 LPEVNRTNINTVARIGRDKSLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQK 511 Query: 408 TEIFIAATPFLVKP 421 I I FL++P Sbjct: 512 M-IRI----FLIQP 520 >gi|302185350|ref|ZP_07262023.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. syringae 642] Length = 690 Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 96/248 (38%), Gaps = 40/248 (16%) Query: 231 AADF-GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 A +F GG ++E G S V D+ F L ALE + + P++ + Q A Sbjct: 331 AGNFSGGANIAENGRSSTMFVQDQDKFFAGLRALEGNGSATVIGNPSVLTLENQPAVIDF 390 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGVNAG-- 346 + + V T G L P ++ + G IQ V+ + G Sbjct: 391 SQTEILEAVGERVANFQPLTA--GTSLQVIPRSITASGAKNQMIQL-----VVDIEDGQI 443 Query: 347 -------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + PS R T + ++V+ G + + + +P LS IPILG L Sbjct: 444 EESNIRAEQPSVRRGNVSTQAVIAEKASLVVGGFHVYENNERTKKVPYLSAIPILGKLLF 503 Query: 400 NSR----FNREETEIFIAATPFL----VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 +R NRE +FI TP L V P+ D P+ V+D R+NKI Sbjct: 504 TARERGQSNRE--RLFI-LTPRLVGDQVNPMRYIDYGNPN---HVQD--------RLNKI 549 Query: 452 YGPKEASE 459 +E +E Sbjct: 550 KERREGAE 557 >gi|256259410|gb|ACU65047.1| HrcC [Pseudomonas syringae pv. syringae] Length = 701 Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 96/248 (38%), Gaps = 40/248 (16%) Query: 231 AADF-GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 A +F GG ++E G S V D+ F L ALE + + P++ + Q A Sbjct: 342 AGNFSGGANIAENGRSSTMFVQDQDKFFAGLRALEGNGSATVIGNPSVLTLENQPAVIDF 401 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGVNAG-- 346 + + V T G L P ++ + G IQ V+ + G Sbjct: 402 SQTEILEAVGERVANFQPLTA--GTSLQVIPRSITASGAKNQMIQL-----VVDIEDGQI 454 Query: 347 -------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + PS R T + ++V+ G + + + +P LS IPILG L Sbjct: 455 EESNIRAEQPSVRRGNVSTQAVIAEKASLVVGGFHVYENNERTKKVPYLSAIPILGKLLF 514 Query: 400 NSR----FNREETEIFIAATPFL----VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 +R NRE +FI TP L V P+ D P+ V+D R+NKI Sbjct: 515 TARERGQSNRE--RLFI-LTPRLVGDQVNPMRYIDYGNPN---HVQD--------RLNKI 560 Query: 452 YGPKEASE 459 +E +E Sbjct: 561 KERREGAE 568 >gi|86130937|ref|ZP_01049536.1| general secretion pathway protein D [Dokdonia donghaensis MED134] gi|85818348|gb|EAQ39508.1| general secretion pathway protein D [Dokdonia donghaensis MED134] Length = 728 Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust. Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 14/156 (8%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------TGAT 305 +F + A E + P +T ++G A F++G Y+ + + + Sbjct: 553 NFFATIRASETNGNFNIKSSPRITTLNGHRAYFSNGRTSYYEITQNQFVGVQNPVVSESV 612 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 D + L P V G + + I Q+ S + N P R+ + ++ Sbjct: 613 DYVPIDAELSLEVLPFVSEDGEVTMDIKVIQSSFSGERVTENGP--PEISSREFTSIIKS 670 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + +VL GL +D G+P L++IPI+ LF Sbjct: 671 RTNDIVVLGGLEEDSKNNSGSGVPFLARIPIIKWLF 706 >gi|218887514|ref|YP_002436835.1| type III secretion outer membrane pore, YscC/HrcC family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758468|gb|ACL09367.1| type III secretion outer membrane pore, YscC/HrcC family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 666 Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust. Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 24/246 (9%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKFVSEGG 243 V + I ++ D + +G + T + SG + DF GK + G Sbjct: 319 VEIHAAIVDIDSDYKRDLGVTYQGT-AGSGQRWAGGGDFSTGTDAFPTLPSPGKPLGNGL 377 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 S + F + ALE+ R L P++ + A+ + Y Sbjct: 378 TLSTIYTMGSDYFLAQVTALEKNGEARMLGRPSVLTVDNVQATLEN--TSTYYIEVQGYQ 435 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRI---------QTEVSEPVIGVNAGDMPSYRVR 354 A + + G VL TP ++ G I Q + S N+ +P + Sbjct: 436 AVDLFKVEAGTVLRVTPHIIRNEDGGQSIKLVVSVQDDQNDNSSATSTSNSTAIPPVKQT 495 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 K +T + G ++++ G + GIP+L IP+LG LF+ + + E I Sbjct: 496 KINTQAIVGGGQSLLIGGYYYEQKSTTDTGIPILMDIPVLGHLFKTNSKTSKRMERLILI 555 Query: 415 TPFLVK 420 TP +V+ Sbjct: 556 TPKVVR 561 >gi|224373205|ref|YP_002607577.1| hypothetical protein NAMH_1181 [Nautilia profundicola AmH] gi|223589165|gb|ACM92901.1| hypothetical protein NAMH_1181 [Nautilia profundicola AmH] Length = 396 Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 15/175 (8%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSV 307 +F + L A T+++PT+ I + + S Y T S +T T + Sbjct: 212 NFSAFIKFLNSKGAAETISKPTILLIDSSNYTLESVHSIPYVTKSVTTDKDGNPVTQTDL 271 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D G+ ++ ++ I + V E ++ + D P + +T V+L + Sbjct: 272 KYKDVGLKIYIKNVYITDRSIDFDMDIYV-ESIVSYD-NDKPITDTKHFNTHVQLTKKSS 329 Query: 368 -IVLAGLLKDDIQQLKE--GIPLLSKIPILGALFRNSRFNREETEI-FIAATPFL 418 ++AGL + ++ E G+P+L IPILG LF+ ++ + E+ F +T F Sbjct: 330 GYLIAGLRT--VTKISEDSGVPVLKDIPILGILFQKNKKSVEDLSFSFYISTNFF 382 >gi|294507285|ref|YP_003571343.1| general secretion pathway protein D [Precursor] [Salinibacter ruber M8] gi|294343613|emb|CBH24391.1| Probable general secretion pathway protein D [Precursor] [Salinibacter ruber M8] Length = 473 Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust. Identities = 41/187 (21%), Positives = 74/187 (39%), Gaps = 23/187 (12%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L+ +E+ RT+A P +T SG+ GQ + + G T G++ Sbjct: 241 FRRFLNLVEQDNVGRTVANPQVTVQSGEQGEIQI-GQDVPIQTTDFAGNTVTEFFSTGII 299 Query: 316 LHFTPTVLSPG-------------RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 + TPT+LS + + ++ S+P +G P +A T + L Sbjct: 300 IDVTPTLLSQPVADTSGAPVLDFIHLNVDVEDSNSQP-----SGSGPIINRNQASTQILL 354 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIP--ILGA--LFRNSRFNREETEIFIAATPFL 418 + GL+ + G+P+L +P + G +F + N + E+ I + Sbjct: 355 LDNEATAIGGLISTQKTTRRSGVPILKDLPGWVFGLRYIFGSETTNVTKQELLIVLRAEI 414 Query: 419 VKPVAMR 425 V P+ R Sbjct: 415 VDPLRAR 421 >gi|41019214|gb|AAR98526.1| HrcC [Pseudomonas syringae pv. phaseolicola] Length = 699 Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust. Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 20/244 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+++ + + + I ++ R+ L ++ + + SS G GG + + Sbjct: 307 EKLIKELDVS-RNLIEIDAVILDIDRNELAELFNRWNFNASSVG---------GGVNLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSS 300 G S + + F + LHALE + + P++ + Q A S +++ T Sbjct: 357 AGTSSTMFIQNAGKFXSELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYITATSER 416 Query: 301 STGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKAD 357 +T G L P L G+ +++ ++ + I ++ PS R Sbjct: 417 VANIEPITA---GTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVS 473 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAAT 415 T + G++V+ G + IPLL IP +G L SR +RE + E T Sbjct: 474 TQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSR-SRELGQRERLFILT 532 Query: 416 PFLV 419 P L+ Sbjct: 533 PRLI 536 >gi|313681304|ref|YP_004059042.1| type ii and iii secretion system protein [Sulfuricurvum kujiense DSM 16994] gi|313154164|gb|ADR32842.1| type II and III secretion system protein [Sulfuricurvum kujiense DSM 16994] Length = 481 Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 23/230 (10%) Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFETVLHALERAT 267 +G S+ S + SF A G S G F + D ++ + +++ALE Sbjct: 253 LGIDWSLVPSLAKDGLSFVASATGSLGSAGASAVPLTFGMIMKNDTYNGKALVNALENFG 312 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDY----GVVLHFT 319 + ++ P L ++G + T G + Y + S G V+T G+ ++ Sbjct: 313 KVESVQRPKLLGLAGTNVKLTDGVEAPYISGIQNTSVGNGTAQVSTTSATALSGLEINLK 372 Query: 320 PTVLSP---GRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L IGL+I V VN P + + T+ + G IV++GL Sbjct: 373 SNMLDGTVITDIGLKINDIVGYTSFEVNGNKFSQPQTVTKAINNTMRVQPGVPIVISGLF 432 Query: 375 KDDIQQLKEGIPLL--SKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 ++ + G+P L S ++G S ++E+ I TP ++K V Sbjct: 433 RNKSDKGWNGLPGLGDSAAGVVGGARHTS---NTKSEMVIVVTPRVIKYV 479 >gi|269138220|ref|YP_003294920.1| Type II secretory pathway, component PulD like protein [Edwardsiella tarda EIB202] gi|55981981|gb|AAV69411.1| EsaC [Edwardsiella tarda] gi|61743031|gb|AAX55251.1| EsaC [Edwardsiella tarda] gi|267983880|gb|ACY83709.1| Type II secretory pathway, component PulD like protein [Edwardsiella tarda EIB202] gi|304558263|gb|ADM40927.1| EsaC [Edwardsiella tarda FL6-60] Length = 494 Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust. Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 23/216 (10%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------ADFGGKFVSEGGDFSVKG 249 + + VTI +V + ++G S + G SF AD ++ G F V+ Sbjct: 272 IEISVTIIDVDAGDINELGIDWSASARIGGGQVSFNNSGGLNADSFSSLIANSGSFMVR- 330 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 L ALE+ + + ++ P++ + A K S T Sbjct: 331 ----------LSALEQQSKAKIVSRPSVVTLDNVQAVLDRSITFYTKLRSEKNPKLEAIT 380 Query: 310 HDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSG 365 G ++ TP ++ +I L + E ++ A +P + + T L G Sbjct: 381 A--GALMRVTPRLIRERGGNKILLILNIEDGRQGAPLSQAESLPQVQNAEIATQATLNLG 438 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 ++L G ++++ Q IPLL IP++G LFR++ Sbjct: 439 QALLLGGFVQNENTQGVRKIPLLGDIPLIGGLFRST 474 >gi|8996028|gb|AAF82327.1|AF005744_3 YsaC [Yersinia enterocolitica] Length = 525 Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P +T + ++++ G +D +++ + IPLLS IP+LG LF+ N+++ Sbjct: 453 LPEVNRTNINTVARIGRDKSLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQK 512 Query: 408 TEIFIAATPFLVKP 421 I I FL++P Sbjct: 513 M-IRI----FLIQP 521 >gi|15088592|gb|AAK84103.1|AF369954_1 YsaC [Yersinia enterocolitica] Length = 526 Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P +T + ++++ G +D +++ + IPLLS IP+LG LF+ N+++ Sbjct: 454 LPEVNRTNINTVARIGRDKSLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQK 513 Query: 408 TEIFIAATPFLVKP 421 I I FL++P Sbjct: 514 M-IRI----FLIQP 522 >gi|87120224|ref|ZP_01076119.1| general secretion pathway protein (PilQ) [Marinomonas sp. MED121] gi|86164327|gb|EAQ65597.1| general secretion pathway protein (PilQ) [Marinomonas sp. MED121] Length = 57 Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 25/36 (69%) Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G T+ L GL+ ++ +Q + G+P+L +P +G LFR+ Sbjct: 3 GETMALGGLVSEETRQSESGVPMLKDLPFIGRLFRS 38 >gi|7416786|dbj|BAA94035.1| chlorophillide reductase subunit [Rubrivivax gelatinosus] gi|29893483|gb|AAO93116.1| chlorophyllide reductase X subunit [Rubrivivax gelatinosus] Length = 334 Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 9/115 (7%) Query: 310 HDYG---VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-YRVRKADTTVEL--P 363 HD+G V+L F V+ G GL I ++ + VI V + D+ S Y VE Sbjct: 149 HDWGFDYVLLDFLGDVVC-GGFGLPIARDMCQKVIVVGSNDLQSLYVANNVCNAVEYFRK 207 Query: 364 SGGTIVLAGLL--KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 GG + +AG++ KDD + + IP+L A+ N R+ I A P Sbjct: 208 LGGNVGVAGMVINKDDGTGEAQAFAAHAGIPVLAAIPANEEIRRKSAAYDIVARP 262 >gi|71737444|ref|YP_273539.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557997|gb|AAZ37208.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. phaseolicola 1448A] gi|170523102|gb|ACB20761.1| type III outer-membrane secretion protein HrcC [Pseudomonas syringae pv. glycinea] gi|320322961|gb|EFW79051.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. glycinea str. B076] gi|320329916|gb|EFW85904.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. glycinea str. race 4] gi|330874593|gb|EGH08742.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. glycinea str. race 4] Length = 699 Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust. Identities = 52/244 (21%), Positives = 100/244 (40%), Gaps = 20/244 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+++ + + + I ++ R+ L ++ + + S G GG + + Sbjct: 307 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSS 300 G S + + F + LHALE + + P++ + Q A S +++ T Sbjct: 357 AGTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYITATSER 416 Query: 301 STGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKAD 357 +T G L P L G+ +++ ++ + I ++ PS R Sbjct: 417 VANIEPITA---GTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVS 473 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAAT 415 T + G++V+ G + IPLL IP +G L SR +RE + E T Sbjct: 474 TQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILT 532 Query: 416 PFLV 419 P L+ Sbjct: 533 PRLI 536 >gi|42562008|gb|AAS20450.1| HrcC [Pseudomonas syringae pv. phaseolicola] Length = 699 Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust. Identities = 52/244 (21%), Positives = 100/244 (40%), Gaps = 20/244 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+++ + + + I ++ R+ L ++ + + S G GG + + Sbjct: 307 EKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT-SGGQHLYKTVSS 300 G S + + F + LHALE + + P++ + Q A S +++ T Sbjct: 357 AGTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYITATSER 416 Query: 301 STGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKAD 357 +T G L P L G+ +++ ++ + I ++ PS R Sbjct: 417 VANIEPITA---GTSLQVIPRSLDHDGKPQVQLIVDIEDGKIDISDINDTQPSVRKGNVS 473 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAAT 415 T + G++V+ G + IPLL IP +G L SR +RE + E T Sbjct: 474 TQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSR-SRELSQRERLFILT 532 Query: 416 PFLV 419 P L+ Sbjct: 533 PRLI 536 >gi|160902548|ref|YP_001568129.1| hypothetical protein Pmob_1087 [Petrotoga mobilis SJ95] gi|160360192|gb|ABX31806.1| hypothetical protein Pmob_1087 [Petrotoga mobilis SJ95] Length = 694 Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 27/45 (60%) Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 R ++ +P+GG I L GL I + + GIP+ +IP++G LF Sbjct: 620 RNMNSKFIIPNGGFIKLGGLNFTSIVENETGIPIFKEIPVIGQLF 664 >gi|297821329|ref|XP_002878547.1| hypothetical protein ARALYDRAFT_481003 [Arabidopsis lyrata subsp. lyrata] gi|297324386|gb|EFH54806.1| hypothetical protein ARALYDRAFT_481003 [Arabidopsis lyrata subsp. lyrata] Length = 1061 Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 12/105 (11%) Query: 112 LDILIER------DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 +D+L+E+ +IA TL+R + D +I + + + + + R IQ+ QR + E Sbjct: 592 MDLLVEQVKMLAGEIAFSTSTLKRLV-DQSIN-DPENSKIQIQNLEREIQEKQRQMRSLE 649 Query: 166 TFLSQSGRNQYANSSS----KKVMNLLNIAGEDQVTLKVTIAEVR 206 +++SG AN+SS +KVM L+ E L++ A+ R Sbjct: 650 QRITESGEASIANASSIEMQQKVMRLMTQCNEKSFELEIISADNR 694 >gi|227823967|ref|YP_002827940.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234] gi|227342969|gb|ACP27187.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234] Length = 141 Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +L++ V V++ + AD V +T+ L G+N G N++++ DG +++ IL+ Sbjct: 45 VLKLDRPVSKVIIGNSDVADATVADSKTIVLTGRNFGTTNLVILDQDGNAIVDERILVSI 104 Query: 119 D 119 D Sbjct: 105 D 105 >gi|297538460|ref|YP_003674229.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301] gi|297257807|gb|ADI29652.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301] Length = 589 Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust. Identities = 62/278 (22%), Positives = 97/278 (34%), Gaps = 52/278 (18%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV----- 239 + L+ + E QV L+ I V+ + Q G S+ G S G + + K Sbjct: 267 LRLMQVTIERQVILEAKIMNVQLNDQSQSGVNWSVFGKS-GSNTGIVGNLNAKTTLGRAG 325 Query: 240 ---SEGGDFSVKG-------------------VLDRFSFETVLHALERATAIRTLAEPTL 277 GD S L +F +L LE ++ L+ P + Sbjct: 326 NGDVTSGDLSASSGNVIANTATTALGGPLFAVALQGANFAALLSFLETQGDVQVLSSPRI 385 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDY--GVVLHFTPTVLSPG 326 I+ Q A G + T SS VT + G+ L TP + Sbjct: 386 ATINNQKAVLKVGTDEFFVTGISSNTTASTGATTTSPEVTLQPFFSGIALDVTPQIDKDD 445 Query: 327 RIGLRIQTEVSEPVIGVN--------AGD----MPSYRVRKADTTVELPSGGTIVLAGLL 374 I L + +S+ V VN +G+ + S V + D+ V G I + GL+ Sbjct: 446 NIILHMHPSISQ-VTTVNKQLNLGGVSGNINLPLASSNVSETDSIVRTHDGRVIAIGGLM 504 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + K +P L I +G FR +TE+ I Sbjct: 505 TESSISNKSKVPGLGDIKGVGNAFRQKGSTSSKTELVI 542 >gi|209551755|ref|YP_002283672.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537511|gb|ACI57446.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 136 Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +L++ V V+V + AD V +T+ L G++ G N++L+ DG +L+ IL+ Sbjct: 40 VLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSI 99 Query: 119 D 119 D Sbjct: 100 D 100 >gi|218671456|ref|ZP_03521126.1| pilus subunit transmembrane protein [Rhizobium etli GR56] Length = 135 Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +L++ V V+V + AD V +T+ L G++ G N++L+ DG +L+ IL+ Sbjct: 40 VLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSI 99 Query: 119 D 119 D Sbjct: 100 D 100 >gi|114798749|ref|YP_761695.1| hypothetical protein HNE_3018 [Hyphomonas neptunium ATCC 15444] gi|114738923|gb|ABI77048.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 147 Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust. Identities = 18/83 (21%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 +++S+ +K + L++ ++V + ADV VH R +++ GK+ G N+++ G Sbjct: 23 AQQLSVEASKTVPLRLTGPAASIVVGNKNIADVAVHDDRLIFVTGKSYGTTNLMVFNKAG 82 Query: 107 KQMLNLDILIERDIAHLEMTLRR 129 +++ + ++++ + + L +T+ R Sbjct: 83 EEVYSAEVVVTANSSSL-VTVNR 104 >gi|190889877|ref|YP_001976419.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652] gi|190695156|gb|ACE89241.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652] Length = 136 Score = 36.6 bits (83), Expect = 9.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +L++ V V+V + AD V +T+ L G++ G N++L+ DG +L+ IL+ Sbjct: 40 VLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSI 99 Query: 119 D 119 D Sbjct: 100 D 100 >gi|330862439|emb|CBX72597.1| hypothetical protein YEW_HP33920 [Yersinia enterocolitica W22703] Length = 149 Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +P + T L G +++L G ++D + + IPLL IP+LG LFR++ Sbjct: 74 LPEIQNSDISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRST 127 >gi|327194698|gb|EGE61544.1| pilus subunit transmembrane protein [Rhizobium etli CNPAF512] Length = 136 Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +L++ V V+V + AD V +T+ L G++ G N++L+ DG +L+ IL+ Sbjct: 40 VLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSI 99 Query: 119 D 119 D Sbjct: 100 D 100 >gi|167571699|ref|ZP_02364573.1| Type II secretory pathway, component PulD [Burkholderia oklahomensis C6786] Length = 439 Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 7/138 (5%) Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHD 311 + + AL + + ++ P + +SG+ G Q ++ S G+ S+T D Sbjct: 278 DAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQD 337 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVL 370 G++ P V+ I +++ E+S+ V D P+ R+ T + G IVL Sbjct: 338 AGLIFDVEPIVMR-EVIEVKVHEEISDFVATKTGVDTSPTKNTRQLQTVTRMKDGEVIVL 396 Query: 371 AGLLKDDIQQLKEGIPLL 388 GL++D + G L Sbjct: 397 GGLIQDRNATARSGYAWL 414 >gi|167947039|ref|ZP_02534113.1| Type II secretory pathway component PulD-like protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 290 Score = 36.6 bits (83), Expect = 9.6, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 16/156 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDR 253 QV ++VTIAEV Q G S+ GS G + +A G + ++ G ++ Sbjct: 96 QVLIEVTIAEVVLSDHFQAGVDWSLIGSDIGIN---SAMIGQNLLQAPLASLTLSGNING 152 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------------KTVSSS 301 L ALE ++ L+ P + ++ Q A Q +Y + Sbjct: 153 DPLNLTLKALENFGKVKVLSSPKIMTLNNQPAVLRVTDQRVYMITDVEVEEDQETKTKTR 212 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 T T+V T G+VL TP V + L I+ +S Sbjct: 213 TFETTVNTVPEGLVLTVTPYVDQFDTVMLNIRPTIS 248 >gi|51593443|gb|AAH80733.1| Golga1 protein [Mus musculus] Length = 733 Score = 36.6 bits (83), Expect = 9.6, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 17/150 (11%) Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 + II Q +D+Q V K V+ H + K + Q L G D Q ++L Sbjct: 244 QAIIQQHSIDLQKVTAETQEKEKVITHLQEKVIFLEKRLEQN---LSGEDHVQ----ELL 296 Query: 116 IERDIA--HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 E+ +A +LE T ++ +A N S T L+ + ++D +R+++ +E LSQS R Sbjct: 297 KEKTVAEQNLEDTRQQLLAARN------SHTKALYLLETRVKDLERSLQAAEEQLSQS-R 349 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 N A+ + ++ L+ E+ ++ + +A Sbjct: 350 NVVADQEA-QIQKLITTNQENSLSQQQVLA 378 >gi|217077653|ref|YP_002335371.1| general secretion pathway protein D, putative [Thermosipho africanus TCF52B] gi|217037508|gb|ACJ76030.1| general secretion pathway protein D, putative [Thermosipho africanus TCF52B] Length = 368 Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN--REETEIFIAA 414 +AGL D + + GIP L IPI+G LF+NS + ++ IFI A Sbjct: 315 IAGLSFDSVTKQDGGIPGLKDIPIIGNLFKNSTYTSRKKNIVIFIKA 361 >gi|148694893|gb|EDL26840.1| golgi autoantigen, golgin subfamily a, 1, isoform CRA_d [Mus musculus] Length = 743 Score = 36.6 bits (83), Expect = 10.0, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 17/150 (11%) Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 + II Q +D+Q V K V+ H + K + Q L G D Q ++L Sbjct: 254 QAIIQQHSIDLQKVTAETQEKEKVITHLQEKVIFLEKRLEQN---LSGEDHVQ----ELL 306 Query: 116 IERDIA--HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 E+ +A +LE T ++ +A N S T L+ + ++D +R+++ +E LSQS R Sbjct: 307 KEKTVAEQNLEDTRQQLLAARN------SHTKALYLLETRVKDLERSLQAAEEQLSQS-R 359 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 N A+ + ++ L+ E+ ++ + +A Sbjct: 360 NVVADQEA-QIQKLITTNQENSLSQQQVLA 388 Searching..................................................done Results from round 2 >gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040404|gb|ACT57200.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 474 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 474/474 (100%), Positives = 474/474 (100%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL Sbjct: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI Sbjct: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS Sbjct: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS Sbjct: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS Sbjct: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV Sbjct: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK Sbjct: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK Sbjct: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 >gi|315121891|ref|YP_004062380.1| putative pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495293|gb|ADR51892.1| putative pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 471 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 330/474 (69%), Positives = 389/474 (82%), Gaps = 3/474 (0%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M+ Q+T F + IF+ SSN +A+ + NA+ I+I D IG KKI+IGL KV+IL Sbjct: 1 MKNFQKTLFMLFVIFISSSNFLLAQSKLVDAKNASTIHIGDSAIGTSKKINIGLGKVVIL 60 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P VQDVLVSDPTKADVVVHS +T+Y+FGK+VGQANVILIGHD KQ+LN+DI IERDI Sbjct: 61 HLPSRVQDVLVSDPTKADVVVHSSKTVYIFGKSVGQANVILIGHDEKQLLNIDIFIERDI 120 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 +LEMT RRF++ SNI VEM+SD +VLHG VRTIQDSQ AVELS FLS N Y +S Sbjct: 121 RNLEMTFRRFLSGSNIHVEMLSDNLVLHGEVRTIQDSQHAVELSNMFLSNERNNLYKTAS 180 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 KV+NLLNI EDQVTLKVTIAEVRRD+LKQIGFQH+I SS GPSK DF G Sbjct: 181 GSKVINLLNIGAEDQVTLKVTIAEVRRDVLKQIGFQHTI--SSGGPSKGKRIDFDGSLGG 238 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 +G DF++ +LDRF+F++VL+ALERATAIRTLAEPTLTAISGQ+A+F SGG LY++V Sbjct: 239 QGADFAMTTILDRFTFKSVLNALERATAIRTLAEPTLTAISGQNATFRSGGTRLYRSV-G 297 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + G +++T HDYGVVL FTPTVLSPGRIGLRI+TEVSEPV+GV+ P YR+RKADTTV Sbjct: 298 ANGTSTITPHDYGVVLTFTPTVLSPGRIGLRIETEVSEPVLGVSTTGEPEYRMRKADTTV 357 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ELPSGGTIVLAGLLKDDIQQ + G+PLLSKIPILGALFR++ F+REETEIFI+ATPFLVK Sbjct: 358 ELPSGGTIVLAGLLKDDIQQKRGGVPLLSKIPILGALFRSNSFSREETEIFISATPFLVK 417 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 PVAM +LSRPDD+Y +E+DAKAF FNRVNKIYGPKEA++ GQNYKGAIGFIYK Sbjct: 418 PVAMNELSRPDDNYDIENDAKAFLFNRVNKIYGPKEAAQGNGQNYKGAIGFIYK 471 >gi|15963894|ref|NP_384247.1| putative pilus assembly transmembrane protein [Sinorhizobium meliloti 1021] gi|307315791|ref|ZP_07595305.1| type II and III secretion system protein [Sinorhizobium meliloti BL225C] gi|307320426|ref|ZP_07599843.1| type II and III secretion system protein [Sinorhizobium meliloti AK83] gi|15073069|emb|CAC41528.1| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|306893992|gb|EFN24761.1| type II and III secretion system protein [Sinorhizobium meliloti AK83] gi|306898559|gb|EFN29232.1| type II and III secretion system protein [Sinorhizobium meliloti BL225C] Length = 511 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 214/508 (42%), Positives = 314/508 (61%), Gaps = 37/508 (7%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 + + + +S L S ++ LP + A+++V+ I D G K I++GLNK +++ Sbjct: 6 KKFRASLAAGLSFCLTFSGMALPTLPAAEAASSSVVRIVDSGPGARKTINLGLNKAVVVD 65 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 +P D D+LV+DP+ AD + + R +YLFGK+VGQ N+ + G G+++++L++ +ERD+A Sbjct: 66 LPSDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVA 125 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN------- 174 LE LRRFI D++I VE++SD VVL G VRT DS RAV+L+ FL Sbjct: 126 GLEANLRRFIPDADINVEIISDNVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQ 185 Query: 175 --------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 + + +++NLL I G+DQVTLKVT+AEV R +LKQ+GF ++ SG Sbjct: 186 GNNGDADIFAEDRQNSQIVNLLTIEGDDQVTLKVTVAEVSRQVLKQLGFNGRVSDGESGI 245 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S A+ G ++ G + +KG + + + ++A+E+A +RTLAEP+LTAISGQ A Sbjct: 246 SFRNPANL-GDAIAVGTNALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAISGQEAK 304 Query: 287 FTSGGQHLY-----KTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVS 337 F GG+ + TG T+V +YG+ L+F P VL PGRI L+I+T+VS Sbjct: 305 FYVGGEFRLAGVQEVSTDDETGQTTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVS 364 Query: 338 EP------VIGVNAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 EP V G + +P R R+A T+VELPSGG+IV+AGL++D+I+Q G+P Sbjct: 365 EPTYEGSVVTGNSMTAIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLP 424 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 SKIPILG LFR+ F R ETE+ I ATP+LV+PVA +SRPDD+++ +D ++FF Sbjct: 425 GASKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISRPDDNFNPANDLESFFLG 484 Query: 447 RVNKIYGPKEASEVEGQNYKGAIGFIYK 474 RVN+IYG EA G+ Y G +GFIYK Sbjct: 485 RVNRIYGRPEAQPPAGR-YHGNVGFIYK 511 >gi|150398541|ref|YP_001329008.1| type II and III secretion system protein [Sinorhizobium medicae WSM419] gi|150030056|gb|ABR62173.1| type II and III secretion system protein [Sinorhizobium medicae WSM419] Length = 524 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 212/506 (41%), Positives = 312/506 (61%), Gaps = 37/506 (7%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 + + S +L S ++ P + A+++V+ I + G K I++GLNK +++ +P Sbjct: 21 FRASLAAGFSFWLIFSGMALPTAAPAEAASSSVVRIVNSGPGARKTINLGLNKAVVVDLP 80 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D D+LV+DP+ AD + + R +YLFGK+VGQ N+ + G G+++++L++ +ERD+A L Sbjct: 81 SDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVAGL 140 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN--------- 174 E LRRFI D++I+VE++SD VVL G VRT DS RAV+L+ FL Sbjct: 141 ESNLRRFIPDADIKVEIISDNVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQGN 200 Query: 175 ------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 + S +++NLL I G+DQVTLKVT+AEV R +LKQ+GF ++ SG S Sbjct: 201 NGDADIFAEDRQSSQIVNLLTIEGDDQVTLKVTVAEVSRQVLKQLGFNGRVSDGESGISF 260 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 A+ G + G + +KG + + + ++A+E+A +RTLAEP+LTAISGQ A F Sbjct: 261 RNPANL-GDMIGIGTNALIKGSIGGTTISSYINAMEQAGVMRTLAEPSLTAISGQEAKFY 319 Query: 289 SGGQHLY-----KTVSSSTGATSVTTH----DYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 GG+ + +G T+V +YG+ L+F P VL PGRI L+I+T+VSEP Sbjct: 320 VGGEFRLAGVQEVSTDDDSGETTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVSEP 379 Query: 340 ------VIGVNAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 V G ++P R R+A T+VELPSGG+IV+AGL++D+I+Q G+P Sbjct: 380 TYEGSVVTGNGTVNIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLPAA 439 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 SKIPILG LFR+ F R ETE+ I ATP+LV+PVA +SRPDD+++ +D ++FF RV Sbjct: 440 SKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISRPDDNFNPANDLESFFLGRV 499 Query: 449 NKIYGPKEASEVEGQNYKGAIGFIYK 474 N+IYG EA G+ Y G +GFIYK Sbjct: 500 NRIYGRAEAQPPAGR-YHGNVGFIYK 524 >gi|325291659|ref|YP_004277523.1| component of type IV pilus [Agrobacterium sp. H13-3] gi|325059512|gb|ADY63203.1| component of type IV pilus [Agrobacterium sp. H13-3] Length = 527 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 215/518 (41%), Positives = 318/518 (61%), Gaps = 47/518 (9%) Query: 2 RYLQRTFFTMMSIFLFSSN------PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLN 55 ++L + ++ L S P+ ++ + +A+++ I++ G K++ +GLN Sbjct: 12 QHLHSSMAGSLAFCLAFSGIPGQHSPAFLRISEAEAQSASIVRITESGSGIRKRLKLGLN 71 Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 K +++ +P D D+LV+DP+ AD V + + +YLFGK VGQ N+ + G G+++++LD+ Sbjct: 72 KALVIDLPEDAHDILVADPSLADAVTRTSKRIYLFGKTVGQTNIFIFGDGGREIVSLDLE 131 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN- 174 +ERDI+ LE +RRFI +S+I+VE+VSD +VL G VRT QDS RAV+L+E FL Sbjct: 132 VERDISGLEANIRRFIPESDIKVEIVSDNIVLTGSVRTPQDSARAVQLAEAFLKGGEATT 191 Query: 175 ----------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 N + +++N+L I GEDQVTLKVT+AEV R +LKQ+GF S Sbjct: 192 RNISLTGGNNGGDAAIFAENRQTSQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGS 251 Query: 219 ITGSSSGPSKSFA--ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 I+ S+S F+ ++ G S +F + L+A+E+A +RTLAEP+ Sbjct: 252 ISSSTSNNGFEFSNPSNLGNAISGASRIASGAIGSGSLNFASYLNAMEQAGVVRTLAEPS 311 Query: 277 LTAISGQSASFTSGGQHLYK-----TVSSSTGATSVT----THDYGVVLHFTPTVLSPGR 327 LTAISG+ A F GG T+ TG ++T T DYG+ L+F P VLSPGR Sbjct: 312 LTAISGEQAKFYVGGDFRLPAEQEVTIDKDTGQPTITRTTNTVDYGITLNFRPVVLSPGR 371 Query: 328 IGLRIQTEVSEP------VIGVNAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKD 376 I L+I+T VSEP V G +P S R R+ TTVELPSGG+IV+AGL++D Sbjct: 372 ISLKIETNVSEPTYEGNVVTGNAGRTIPGSTYMSIRKRETSTTVELPSGGSIVIAGLVQD 431 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 +I+Q G+P +SK+PI G LFR+ F R ETE+ I ATP+LV+PVA ++RPDD+++ Sbjct: 432 NIRQAMSGLPGISKVPIFGTLFRSKDFIRNETELVIIATPYLVRPVARNQIARPDDNFNP 491 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 E+DA +F NRVNK+YG K+ +V+ Y+G++GFIYK Sbjct: 492 ENDAAMYFMNRVNKVYGRKD--QVQAAPYQGSVGFIYK 527 >gi|227823971|ref|YP_002827944.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium fredii NGR234] gi|227342973|gb|ACP27191.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium fredii NGR234] Length = 515 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 212/517 (41%), Positives = 312/517 (60%), Gaps = 45/517 (8%) Query: 1 MRYLQRTFFTMMSIFL----FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56 M+ TF T ++ L S + +P + A ++V+ I + G +K+++GLNK Sbjct: 1 MKRSGNTFRTCLAAGLSFSLTFSGLMLPAVPTAQAAASSVVRIVESGPGVKRKVNLGLNK 60 Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 +++ +P D D+LV+DP AD V + R +YLFGK VGQ N+ + G +G+++++L++ + Sbjct: 61 AVVVDLPTDAHDILVADPVLADAVTRTSRRIYLFGKTVGQTNIFVFGPNGEEIVSLEVAV 120 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-- 174 ERD+A LE LRRFI +++I VE++SD VVL G VRT DS +AV+L+ FL Sbjct: 121 ERDVAGLEANLRRFIPEADINVEIISDNVVLTGTVRTPLDSTKAVDLARAFLQGGEATTR 180 Query: 175 -------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + +++NLL + GEDQVTLKVT+AEV R +LKQ+GF I+ Sbjct: 181 NITAQGTNGDADIFAEERQTSQIVNLLTVEGEDQVTLKVTVAEVSRQVLKQLGFNGRISD 240 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 SG S A+ G + G + +KG + + + ++A+E+A +RTLAEP+LTAIS Sbjct: 241 GESGLSFRNPANL-GDAIGVGANALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAIS 299 Query: 282 GQSASFTSGGQHL---YKTVSSSTGATS----------VTTHDYGVVLHFTPTVLSPGRI 328 GQ A F GG+ + +++ + V +YG+ L+F P VL GRI Sbjct: 300 GQEAKFYVGGEFRLAGVQEITTEEDEATGESVPVVEREVEDAEYGIRLNFKPVVLGAGRI 359 Query: 329 GLRIQTEVSEP------VIGVNAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKDD 377 L I+TEVSEP V G + D+P R R+A T+VELPSGG+IV+AGL++D+ Sbjct: 360 SLAIETEVSEPTYEGSVVTGNSFRDIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDN 419 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 I+Q G+P SKIPILG LFR+ F R E+E+ I ATP+LV+PVA LSRPDD+++ Sbjct: 420 IRQAMSGLPGASKIPILGTLFRSKDFQRNESELVIIATPYLVRPVARSALSRPDDNFNPA 479 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +D ++FF RVN+IYG EA+ G+ Y G +GFIYK Sbjct: 480 NDLESFFVGRVNRIYGRPEAAPPVGR-YHGNVGFIYK 515 >gi|241207157|ref|YP_002978253.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861047|gb|ACS58714.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 499 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 230/499 (46%), Positives = 313/499 (62%), Gaps = 31/499 (6%) Query: 2 RYLQRTFFTMMSIFLFSSN---PSVAKLPPIKEANA---AVINISDVEIGKGKKISIGLN 55 R +S+ + +S S A L EA A +++ IS +++ +GLN Sbjct: 6 RRAGPLLTGCLSLAIGASGMVPASFAPLFGAGEARADSDSLVRISQTGSNAHRRLKLGLN 65 Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 K +++ +P D D+LVSDPT AD V + R +YLFGK VGQ N+ + G G++++NLDI Sbjct: 66 KAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIE 125 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 IERD++ LE+ LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL Sbjct: 126 IERDVSGLEVNLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATT 185 Query: 176 YANSS-----------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 ++ S +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + Sbjct: 186 RTETASGTGGDSSVALFAEGRQSSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNL 245 Query: 219 ITGSSSGPSKSFA---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 ++ SS AD V G K + ++ T L+ALE+A ++TLAEP Sbjct: 246 VSNSSGMTVAQLGSPSADSAASTVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEP 305 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 TLTAISGQ+A+F SGGQ LY T + S G +V +YG+ L F P VLS GRI L+I+T Sbjct: 306 TLTAISGQAATFNSGGQQLYST-TDSDGNVTVVPFNYGISLAFKPVVLSSGRISLQIKTN 364 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 VSEPV G +Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG Sbjct: 365 VSEPVAGSGNA---TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLG 421 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG + Sbjct: 422 TLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRR 481 Query: 456 EASEVEGQNYKGAIGFIYK 474 EA + Q + G+IGFIYK Sbjct: 482 EAPVADAQ-FHGSIGFIYK 499 >gi|190889881|ref|YP_001976423.1| pilus assembly secretion protein [Rhizobium etli CIAT 652] gi|190695160|gb|ACE89245.1| pilus assembly secretion protein [Rhizobium etli CIAT 652] gi|327194694|gb|EGE61540.1| pilus assembly secretion protein [Rhizobium etli CNPAF512] Length = 499 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 227/487 (46%), Positives = 307/487 (63%), Gaps = 29/487 (5%) Query: 12 MSIFLFSSNPSV-AKLPPIKEANAAVIN---ISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I + P+ L + EA A N I+ +++ +GLNK +++ +P D Sbjct: 18 LAISVTGMAPATFGPLLAVDEARADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE L Sbjct: 78 DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------ 181 RRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL ++S Sbjct: 138 RRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 197 Query: 182 -----------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + I+ SS Sbjct: 198 AVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFDNLISNSSGMTVAQL 257 Query: 231 A---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 AD V G K + ++ T L+ALE+A +RTLAEPTLTAISGQ+A+F Sbjct: 258 GTPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPTLTAISGQAATF 317 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 SGGQ LY T + + G +V +YG+ L F P VLS GRI L I+T VSEPV G Sbjct: 318 NSGGQQLYST-TDNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNA- 375 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+E Sbjct: 376 --TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQE 433 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 TE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G Sbjct: 434 TELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHG 492 Query: 468 AIGFIYK 474 +IGFIYK Sbjct: 493 SIGFIYK 499 >gi|222147182|ref|YP_002548139.1| component of type IV pilus [Agrobacterium vitis S4] gi|221734172|gb|ACM35135.1| component of type IV pilus [Agrobacterium vitis S4] Length = 525 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 216/522 (41%), Positives = 304/522 (58%), Gaps = 51/522 (9%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLP----------PIKEANAAVINISDVEIGKGKKI 50 MR F MM S S++ LP + +++ I+ G + + Sbjct: 7 MRLSSARLFRMMITGSLSLGLSISGLPGENMLVWRADALAAGAQSLVRIAQTGPGVRRDL 66 Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 +GLNK I++ +P D D+LV+DP AD V + R +YLFGK VGQ N+ + G DG++++ Sbjct: 67 KLGLNKAIVVDLPEDAHDILVADPELADAVTRTSRRIYLFGKKVGQTNIFIFGADGREIV 126 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 +LD+ IERDI L+ L RFI +SNI+VE++SD VVL G VRT QDS RAV L++ FL Sbjct: 127 SLDLQIERDIEGLQTNLSRFIPESNIKVEIISDNVVLSGTVRTPQDSSRAVSLAKAFLQG 186 Query: 171 SGRNQYANSS------------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 ++ + +++N+L I GEDQVTLKVT+AEV R +LKQ Sbjct: 187 GEATTRGETATSNSSGDGAVAIYAEDRQTSQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQ 246 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 +G S T +SG S + ++ G V GG ++ F ++A+E+A +RTL Sbjct: 247 LGVSASATDGTSGISYANPSNLGNS-VDVGGTATISKTFGSFGISAYVNAMEQAGVMRTL 305 Query: 273 AEPTLTAISGQSASFTSGGQHLY---------KTVSSSTGATSVTTHDYGVVLHFTPTVL 323 AEP+LTAISG+ A F GG++ T T + + +T DYG+ L+F P VL Sbjct: 306 AEPSLTAISGEQAKFYVGGEYRLAAGQEISTDSTTGQKTVSRTTSTVDYGIQLNFRPVVL 365 Query: 324 SPGRIGLRIQTEVSEPVI------GVNAGDMP-----SYRVRKADTTVELPSGGTIVLAG 372 SPGRI L I+T VSEP G + +P S R R+A TTVELPSGG+IV+AG Sbjct: 366 SPGRISLAIETNVSEPTYEGSVVEGNSDSSIPGSTYLSIRKREASTTVELPSGGSIVIAG 425 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L++D+++Q G+P +SKIPI G LFR+ F R ETE+ I ATP+LV+PV L+RPDD Sbjct: 426 LVQDNVRQAMSGLPGISKIPIFGTLFRSKDFVRNETELVIIATPYLVRPVTRNALARPDD 485 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +++ D +F NRVNK+YG KEA+ Y G +G+IYK Sbjct: 486 NFNPAGDGAMYFLNRVNKVYGRKEAT--ANGAYHGTVGYIYK 525 >gi|209551759|ref|YP_002283676.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537515|gb|ACI57450.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 499 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 228/490 (46%), Positives = 310/490 (63%), Gaps = 28/490 (5%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAA---VINISDVEIGKGKKISIGLNKVIILQVPV 64 FF++ + S A L EA A ++ IS +++ +GLNK +++ +P Sbjct: 15 FFSLAVGISGIAPASFAPLLGSSEARADSENLVRISQTGRDAHRRLKLGLNKAVVVDLPE 74 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 D D+LVSDPT AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE Sbjct: 75 DAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLE 134 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--- 181 + L RFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL ++S Sbjct: 135 VNLHRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTG 194 Query: 182 --------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + ++ SS Sbjct: 195 GDSSVALFAEGRQTSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTV 254 Query: 228 KSFA---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 AD V G K + ++ T L+ALE+A ++TLAEPTLTAISGQ+ Sbjct: 255 AQLGSPSADSATSVVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQA 314 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A+F SGGQ LY T + S G +V +YG+ L F P VLS GRI L+I+T VSEPV G + Sbjct: 315 ATFNSGGQQLYST-TDSNGNVTVVPFNYGINLAFKPVVLSSGRISLQIKTNVSEPVAGSS 373 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F Sbjct: 374 GA---TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFE 430 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q Sbjct: 431 RQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ- 489 Query: 465 YKGAIGFIYK 474 + G+IGFIYK Sbjct: 490 FHGSIGFIYK 499 >gi|15887573|ref|NP_353254.1| component of type IV pilus [Agrobacterium tumefaciens str. C58] gi|15155110|gb|AAK86039.1| component of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 527 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 216/517 (41%), Positives = 314/517 (60%), Gaps = 47/517 (9%) Query: 3 YLQRTFFTMMSIFLFSSN------PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56 +L+ + ++ L S P + + +A+++ I++ G K++ +GLNK Sbjct: 13 HLRSSMAGGLAFCLTFSGVPGRHSPDFLRTSEAEAQSASIVRITESGTGIRKRLKLGLNK 72 Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 +++ +P D D+LV+DP+ AD V + R +YLFGK VGQ N+ + G G+++++LD+ + Sbjct: 73 ALVIDLPEDAHDILVADPSLADAVTRTSRRIYLFGKMVGQTNIFIFGDGGREIVSLDLEV 132 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 ERDI+ LE +RRFI +S+I+VE+VSD +VL G VRT QDS RAV+L++ FL Sbjct: 133 ERDISGLEANIRRFIPESDIKVEIVSDNIVLTGSVRTPQDSARAVQLADAFLKGGEATTR 192 Query: 177 ANSSS-----------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 S + +++N+L I GEDQVTLKVT+AEV R +LKQ+GF SI Sbjct: 193 NISLTGGNNGGDAAIFAERRQVSQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGSI 252 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTL 277 + S+SG FA +G G + S F + L+A+E+A +RTLAEP+L Sbjct: 253 SSSTSGNGFEFANPSNLGNAIDGASRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSL 312 Query: 278 TAISGQSASFTSGGQH---------LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 TAISG+ A F GG + K T + T DYG+ L+F P VLSPGRI Sbjct: 313 TAISGEQAKFYVGGDFRLAAEQEVDIDKETGRPTITRTTNTVDYGITLNFKPVVLSPGRI 372 Query: 329 GLRIQTEVSEP------VIGVNAGDMP-----SYRVRKADTTVELPSGGTIVLAGLLKDD 377 L+I+T VSEP V G +P S R R+ TTVELPSGG+IV+AGL++D+ Sbjct: 373 SLKIETNVSEPTYEGNVVTGNGGRTIPGSTYMSVRKRETSTTVELPSGGSIVIAGLVQDN 432 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 ++Q G+P +SKIPI G LFR+ F R ETE+ I ATP+LV+PVA ++RPDD+++ E Sbjct: 433 VRQAMSGLPGMSKIPIFGTLFRSKEFLRNETELVIIATPYLVRPVARNQIARPDDNFNPE 492 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +DA +F NRVNK+YG K+ +V+ Y+G++GFIYK Sbjct: 493 NDAAMYFMNRVNKVYGRKD--QVQAAPYQGSVGFIYK 527 >gi|86355864|ref|YP_467756.1| pilus assembly secretion protein [Rhizobium etli CFN 42] gi|86279966|gb|ABC89029.1| pilus assembly secretion protein [Rhizobium etli CFN 42] Length = 498 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 225/498 (45%), Positives = 311/498 (62%), Gaps = 30/498 (6%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPI-----KEANAAVINISDVEIGKGKKISIGLNK 56 R + +S+ + ++ + A P+ A +++ IS +++ +GLNK Sbjct: 6 RRAKLLLTGCLSLAVGATGIAPASFGPLLVVNEARAAESLVRISQTGPDAHRRLKLGLNK 65 Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 +++ +P D D+LVSDPT AD V + R +YLFGK VGQ N+ + G G++++NLDI I Sbjct: 66 AVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEVVNLDIEI 125 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 ERD++ LE LRRFI DSNI+VE+VSD +VL G VRT QD+ +A +L++ FL Sbjct: 126 ERDVSGLETNLRRFIPDSNIKVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTR 185 Query: 177 ANSSS-----------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++S +V+NLL I GEDQVTLKVTI EVRR++LKQ+GF + + Sbjct: 186 TETASGTGGDSSVALFAEGRQTSQVVNLLQIQGEDQVTLKVTITEVRREVLKQLGFDNLV 245 Query: 220 TGSSSGPSKSFA---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 + SS AD V G K + ++ T L+ALE+A +RTLAEPT Sbjct: 246 SNSSGMTVAQLGSPNADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPT 305 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 LTAISGQ+A+F SGGQ LY T + + G +V +YG+ L F P VLS GRI L I+T V Sbjct: 306 LTAISGQAATFNSGGQQLYST-TDNNGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNV 364 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 SEPV G +Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG Sbjct: 365 SEPVAGSGNA---TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGT 421 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG +E Sbjct: 422 LFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRRE 481 Query: 457 ASEVEGQNYKGAIGFIYK 474 A + Q + G+IGFIYK Sbjct: 482 APVADAQ-FHGSIGFIYK 498 >gi|116249981|ref|YP_765819.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254629|emb|CAK05703.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 501 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 231/500 (46%), Positives = 313/500 (62%), Gaps = 31/500 (6%) Query: 1 MRYLQRTFFTMMSIFLFSSN---PSVAKLPPIKEANA---AVINISDVEIGKGKKISIGL 54 MR +S+ + S S A L EA A +++ IS +++ +GL Sbjct: 7 MRRAGPLVTGCLSLAIGVSGMVPASFATLFAAGEARADSDSLVRISQTGSNAHRRLKLGL 66 Query: 55 NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114 NK +++ +P D D+LVSDPT AD V + R +YLFGK VGQ N+ + G G++++NLDI Sbjct: 67 NKAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDI 126 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 IERD++ LE+ LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL Sbjct: 127 EIERDVSGLEVNLRRFIRDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEAT 186 Query: 175 QYANSS-----------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 ++ S +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + Sbjct: 187 TRTETASGTGGDSSVALFAEGRQSSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDN 246 Query: 218 SITGSSSGPSKSFA---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 ++ SS AD V G K + ++ T L+ALE+A ++TLAE Sbjct: 247 LVSNSSGMTVAQLGSPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAE 306 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 PTLTAISGQ+A+F SGGQ LY T + S G +V +YG+ L F P VLS GRI L+I+T Sbjct: 307 PTLTAISGQAATFNSGGQQLYST-TDSDGNVTVVPFNYGINLAFKPVVLSSGRISLQIKT 365 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VSEPV G +Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+L Sbjct: 366 NVSEPVAGSGNA---TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLL 422 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 G LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG Sbjct: 423 GTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGR 482 Query: 455 KEASEVEGQNYKGAIGFIYK 474 +EA + Q + G+IGFIYK Sbjct: 483 REAPVADAQ-FHGSIGFIYK 501 >gi|163757627|ref|ZP_02164716.1| putative pilus assembly transmembrane protein [Hoeflea phototrophica DFL-43] gi|162285129|gb|EDQ35411.1| putative pilus assembly transmembrane protein [Hoeflea phototrophica DFL-43] Length = 496 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 209/469 (44%), Positives = 292/469 (62%), Gaps = 19/469 (4%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80 P+ +L +A+ +I I G K++ +GLNK I++ +P D D+LV+DP AD V Sbjct: 32 PTTGRLATPAQASQNIIKIKKSGPGVSKRVKLGLNKAIVVDLPTDAHDILVADPALADAV 91 Query: 81 VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140 + R +YLFGK VGQ N+ + G +G++++ +++ IERD+A LE+ L RF+ DSNI+VE+ Sbjct: 92 TRTSRRLYLFGKTVGQTNIFVFGPNGEEIIAIELEIERDVAGLEVHLARFLPDSNIQVEI 151 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS---------------KKVM 185 +SD +VL G VRT QD+ +A L+E FL+ +++ K++ Sbjct: 152 ISDNIVLTGSVRTPQDASQAARLAEIFLTGGEATTRVTTATSEGGDAAINAEDRQKSKIV 211 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 NLL I GEDQVTLKVTIAEV R +LKQ+GF +I+G S + + + Sbjct: 212 NLLKIDGEDQVTLKVTIAEVSRQVLKQLGFNTTISGDGSSSFGNSPSPWL-SVPGLASVG 270 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 SV G + + ALERA IRTLAEP+LTAISG+ A F+ GG ++ G Sbjct: 271 SVAGTISGARISADISALERAGVIRTLAEPSLTAISGEVARFSVGGSFEIESERDEDGTI 330 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 +YG+ L FTP VL+PGRI LRI+TEVSEP +PS + R+A+T+VELPSG Sbjct: 331 -FEEKEYGIKLEFTPVVLAPGRISLRIKTEVSEPTF-EGQSPLPSIQKREAETSVELPSG 388 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 G++VLAGL++D +Q G+P SKIP+LG+LFR+ F R ETE+ I ATP+LVKPVA Sbjct: 389 GSMVLAGLVRDSYRQTISGMPGASKIPVLGSLFRSKEFLRNETELVIIATPYLVKPVARN 448 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +LSRPDD+++ D FF RVN++YG E G+ Y GA+GFIYK Sbjct: 449 ELSRPDDNFNAPSDGAGFFLGRVNRVYGQMETGLPAGR-YHGAVGFIYK 496 >gi|222084469|ref|YP_002542998.1| pilus assembly secretion protein [Agrobacterium radiobacter K84] gi|221721917|gb|ACM25073.1| pilus assembly secretion protein [Agrobacterium radiobacter K84] Length = 505 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 219/493 (44%), Positives = 311/493 (63%), Gaps = 31/493 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLP-----PIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 +S + + +A+ P + +A+ A ++ + + + +GLNK +++ + Sbjct: 18 LLAALSFSVAFAGLPIAEAPVFLRTAVAKADGADSIVTISGLNTKRTLKLGLNKALVVDL 77 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 P D D+LVSDP AD V + R +YLFGK VGQ N+ + G +G+++++LD+ IERDI+ Sbjct: 78 PADAHDILVSDPKMADAVTRTSRRIYLFGKTVGQTNIFVFGANGQEIVSLDLQIERDISG 137 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS- 181 L+ L+RFI DS+I VE+VSD +VL G VRT QDS RA +L+ FL ++S Sbjct: 138 LQANLKRFIPDSDINVEIVSDNIVLTGSVRTPQDSSRAQQLAGAFLKGGEATTRTETASG 197 Query: 182 ----------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 +++NLL I GEDQVTLKVT+AEV+R +LKQIGF ++ +SSG Sbjct: 198 TGGDSSVALFAEGRQTSQIVNLLQIEGEDQVTLKVTVAEVKRSVLKQIGFD-NLVSNSSG 256 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + + + G+ + + L +++ + L+A+E+A A+RTLAEPTLTAIS Sbjct: 257 LTVAQLGNISSDSTAATGNGGLSALFKTALGKYNVSSYLNAMEQAGAVRTLAEPTLTAIS 316 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ+A+F SGGQ LY + S G ++T + YG+ L FTP VLS GRI L +QT+VSEP Sbjct: 317 GQAATFNSGGQTLYSVI-DSDGNVTITPYTYGISLAFTPVVLSAGRISLHVQTQVSEPTG 375 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 A +Y R ADT+VELPSGG+I LAGLL D++QQ G P SKIPILGALFR Sbjct: 376 TTGAA---TYNRRAADTSVELPSGGSIALAGLLSDNVQQSTTGTPGASKIPILGALFRQK 432 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 F R+E+E+ I ATP+LV+PVA ++RPDD++S +DA FF NRVNKIYG K+A V Sbjct: 433 TFQRDESELVIIATPYLVRPVARNQIARPDDNFSPTNDAGVFFMNRVNKIYGRKDAPPVA 492 Query: 462 GQNYKGAIGFIYK 474 ++ G +GFIYK Sbjct: 493 DADFHGTVGFIYK 505 >gi|92116013|ref|YP_575742.1| type II and III secretion system protein [Nitrobacter hamburgensis X14] gi|91798907|gb|ABE61282.1| type II and III secretion system protein [Nitrobacter hamburgensis X14] Length = 486 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 175/489 (35%), Positives = 277/489 (56%), Gaps = 31/489 (6%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 ++ + + +I F+ NP+ L P+ ++ V + + +S+G+ K +++ Sbjct: 10 LQAIVARSLSFAAIAAFTLNPA---LTPVFASDYRVPAATAGAKMHAQSLSLGIGKSVVV 66 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P DV+DVLV+DP A+ VV S + Y+ G VGQ N+I G+Q+ DI + RD+ Sbjct: 67 DLPRDVKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDGSGQQISAYDIAVTRDL 126 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L L++ + +++I+++ + D VVL G ++ +SQ+A +L+ + Sbjct: 127 NGLRAALKQILPNADIKIDGLGDGVVLSGWAQSPVESQQAADLAARLAGGA--------- 177 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---------- 230 KV+N + + G DQV LKV +AEV+RDI+KQ+G S S +F Sbjct: 178 -DKVVNSIAVRGRDQVMLKVVVAEVQRDIIKQLGVDLSANLSYGTAVVNFNNSNPFLATG 236 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 +A G V G S+ + + + L A+E + IRTLAEP+LTAISG+SA+F +G Sbjct: 237 SALVPGNSVVGGFGKSIINGVTMPTVQATLRAMENSGVIRTLAEPSLTAISGESANFLAG 296 Query: 291 GQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGV 343 G+ + S T T +VT +G+ L+FTP VLS GRI LR+ TE SE I + Sbjct: 297 GEFPIPSGVSCTNGTCTPTVTFKKFGISLNFTPVVLSEGRISLRVATEASEVNNENAIQI 356 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + +PS + R+ADTT+E+PSGG++V+AGL+K +Q G+P +S+IP+LG LFR+ + Sbjct: 357 SGTAVPSIKTRRADTTLEIPSGGSMVMAGLIKQQTKQSISGMPGVSQIPVLGTLFRSRDY 416 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 TE+ I TP++V+ VA +DLSRPDD ++ D +A +N+IYG +E Q Sbjct: 417 VNNNTELMILVTPYVVRAVAQKDLSRPDDGFADASDPQADLLGSINRIYGVPGRAEPARQ 476 Query: 464 NYKGAIGFI 472 Y+G GFI Sbjct: 477 -YRGTYGFI 484 >gi|332560337|ref|ZP_08414659.1| Type II and III secretion system protein precursor [Rhodobacter sphaeroides WS8N] gi|332278049|gb|EGJ23364.1| Type II and III secretion system protein precursor [Rhodobacter sphaeroides WS8N] Length = 466 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 136/454 (29%), Positives = 232/454 (51%), Gaps = 28/454 (6%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 AA + +E +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK Sbjct: 29 PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 88 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G+ + L+G DG+ + N+D+ + D+A + LR+ + NI V +D +VL G V Sbjct: 89 APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 148 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + RA++L+ + + +V NL+++ G QV LKV AE++R + K Sbjct: 149 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 196 Query: 213 IGFQH---SITGSSSGPSKSFAAD---FGGKFVSEGGD--FSVKGVLDRFSFETVLHALE 264 +G + +GS G + + + G +S G+ S+ + F+ +L ALE Sbjct: 197 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGNPISTSGNGALSLGFSVGALEFQVLLEALE 256 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +RTLAEP LTA+SGQ A F +GG++ S S+ +GV L+FTP V+ Sbjct: 257 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIPVASGDE-KISIEYKPFGVELNFTPVVVD 315 Query: 325 PGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 +I L I VS V + +++ R+ TTVE+ G + +AGLL+DD + Sbjct: 316 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 375 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 L +P L IPILGALFR++ + R ++E+ I TP LV P L+ P D + + Sbjct: 376 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 435 Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 F F RV G A+EV Q++ G+ G++ + Sbjct: 436 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 466 >gi|260426909|ref|ZP_05780888.1| type II and III secretion system protein [Citreicella sp. SE45] gi|260421401|gb|EEX14652.1| type II and III secretion system protein [Citreicella sp. SE45] Length = 473 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 136/484 (28%), Positives = 237/484 (48%), Gaps = 38/484 (7%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 + L + L A+ N+ V G +++ +N+ ++++ ++ Sbjct: 6 YLKAALIGLALTAGPLVEGARAD----NLRVVRTGTESVLNVPMNRAVVVESDQPFAELS 61 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 +++P AD+ S RT+Y+ GK G + ++ +G+ + N+D+ + D+ + LR+ Sbjct: 62 IANPAIADISSLSERTIYVLGKTPGTTTLTILDGNGRLITNVDVRVAADVTEFKERLRQI 121 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + +I V +D +VL G V + Q QRA++L++ + + ++V NL+ + Sbjct: 122 LPGESIEVRTANDGIVLSGTVSSAQKLQRALDLAQRY------------APERVSNLMTV 169 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---- 246 G QV LKV AE++R + K + SI G G + G +++ G + Sbjct: 170 GGVQQVMLKVRFAEMQRSVSKNLRSSLSIGGPIFGEDEITIGSETGTWLNSGNSYGDAVT 229 Query: 247 ---------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + G +L ALE +RTLAEP LTA+SGQ A F +GG++ Sbjct: 230 VADGTESALLLGFNGAIEVGILLEALESKGMVRTLAEPNLTALSGQEAKFLAGGEYPVP- 288 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRV 353 VS G SVT +GV L+F PTV+ I L+++ VS I +A + ++R Sbjct: 289 VSQEDGKLSVTYKPFGVELNFVPTVIDGDLINLQLEAAVSSIDSSNGITTDAISIDAFRR 348 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+ TTVE+ G + +AGLL+DD + + +P + IP+LGALFR++ + R+++E+ I Sbjct: 349 RETSTTVEMRDGESFAIAGLLQDDFRDVNGQVPWIGDIPVLGALFRSAEYERQQSELVII 408 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN----KIYGPKEASEVEGQNYKGAI 469 TP LV P L+ P D + F F R + + A+EV Q++ G+ Sbjct: 409 VTPHLVTPTRGEALALPTDRVMPPTEKDLFLFGRTSSDDARRPRTGGAAEVARQDFTGSY 468 Query: 470 GFIY 473 G++ Sbjct: 469 GYVM 472 >gi|77462453|ref|YP_351957.1| Outer membrane general secretion pathway protein, secretin [Rhodobacter sphaeroides 2.4.1] gi|77386871|gb|ABA78056.1| Outer membrane general secretion pathway protein, Secretin [Rhodobacter sphaeroides 2.4.1] Length = 461 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 136/454 (29%), Positives = 231/454 (50%), Gaps = 28/454 (6%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 AA + +E +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK Sbjct: 24 PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G+ + L+G DG+ + N+D+ + D+A + LR+ + NI V +D +VL G V Sbjct: 84 APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + RA++L+ + + +V NL+++ G QV LKV AE++R + K Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191 Query: 213 IGFQH---SITGSSSGPSKSFAAD----FGGKFVSEG-GDFSVKGVLDRFSFETVLHALE 264 +G + +GS G + + + G + G G S+ + F+ +L ALE Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGASIATSGNGALSLGFSVGALEFQVLLEALE 251 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +RTLAEP LTA+SGQ A F +GG++ S S+ +GV L+FTP V+ Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIPVASGDE-KISIEYKPFGVELNFTPVVVD 310 Query: 325 PGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 +I L I VS V + +++ R+ TTVE+ G + +AGLL+DD + Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 L +P L IPILGALFR++ + R ++E+ I TP LV P L+ P D + + Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430 Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 F F RV G A+EV Q++ G+ G++ + Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461 >gi|221638316|ref|YP_002524578.1| Type II and III secretion system protein [Rhodobacter sphaeroides KD131] gi|221159097|gb|ACM00077.1| Type II and III secretion system protein precursor [Rhodobacter sphaeroides KD131] Length = 461 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 136/454 (29%), Positives = 231/454 (50%), Gaps = 28/454 (6%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 AA + +E +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK Sbjct: 24 PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G+ + L+G DG+ + N+D+ + D+A + LR+ + NI V +D +VL G V Sbjct: 84 APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + RA++L+ + + +V NL+++ G QV LKV AE++R + K Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191 Query: 213 IGFQH---SITGSSSGPSKSFAAD----FGGKFVSEG-GDFSVKGVLDRFSFETVLHALE 264 +G + +GS G + + + G + G G S+ + F+ +L ALE Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGAPISTSGNGALSLGFSVGALEFQVLLEALE 251 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +RTLAEP LTA+SGQ A F +GG++ S S+ +GV L+FTP V+ Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIPVASGDE-KISIEYKPFGVELNFTPVVVD 310 Query: 325 PGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 +I L I VS V + +++ R+ TTVE+ G + +AGLL+DD + Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 L +P L IPILGALFR++ + R ++E+ I TP LV P L+ P D + + Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430 Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 F F RV G A+EV Q++ G+ G++ + Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461 >gi|126461331|ref|YP_001042445.1| type II and III secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|126102995|gb|ABN75673.1| type II and III secretion system protein [Rhodobacter sphaeroides ATCC 17029] Length = 461 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 136/454 (29%), Positives = 231/454 (50%), Gaps = 28/454 (6%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 AA + +E +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK Sbjct: 24 PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G+ + L+G DG+ + N+D+ + D+A + LR+ + NI V +D +VL G V Sbjct: 84 APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + RA++L+ + + +V NL+++ G QV LKV AE++R + K Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191 Query: 213 IGFQH---SITGSSSGPSKSFAAD----FGGKFVSEG-GDFSVKGVLDRFSFETVLHALE 264 +G + +GS G + + + G + G G S+ + F+ +L ALE Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGAPISTSGNGALSLGFSVGALEFQVLLEALE 251 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +RTLAEP LTA+SGQ A F +GG++ S S+ +GV L+FTP V+ Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIPVASGDE-KISIEYKPFGVELNFTPVVVD 310 Query: 325 PGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 +I L I VS V + +++ R+ TTVE+ G + +AGLL+DD + Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 L +P L IPILGALFR++ + R ++E+ I TP LV P L+ P D + + Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430 Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 F F RV G A+EV Q++ G+ G++ + Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461 >gi|260574616|ref|ZP_05842619.1| type II and III secretion system protein [Rhodobacter sp. SW2] gi|259023033|gb|EEW26326.1| type II and III secretion system protein [Rhodobacter sp. SW2] Length = 470 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 138/492 (28%), Positives = 239/492 (48%), Gaps = 44/492 (8%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 R F+T L + L P+ + V+ E + + + LN+ ++++ Sbjct: 2 FMRNFWT---AGLLGLALATTALSPVAAQSLRVM-----EGSASRALEVPLNRAVVVESD 53 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V ++ +++P AD+ S +++Y+ GK G+ + L+G DG+ + N+++ + D+A Sbjct: 54 VPFAELSIANPGIADISTLSDKSIYVLGKAPGRTTLTLLGPDGRLISNVEVQVSPDVAEF 113 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + LR+ + I V +D +VL G V + RA++L+E + + ++ Sbjct: 114 KERLRQILPGELIEVRTANDGIVLSGTVSSTAKLDRALDLAERY------------APER 161 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-----------------SGP 226 V NL+++ G QV LKV AE++R + K + +I GS+ Sbjct: 162 VSNLMSVGGTQQVMLKVRFAEMQRSVAKNLSASLAINGSTGGGNVGVNAGSGQFTAGGTR 221 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 FA + G ++ F +L ALE +RTLAEP LTA+SGQ A Sbjct: 222 DGVFAGTSQSGADNSEGVATIGFSAGSLQFAVLLEALESKGVVRTLAEPNLTALSGQEAK 281 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 F +GG++ V+ +G+ SV +GV ++FTP V+ I L I VS V Sbjct: 282 FLAGGEYPIP-VADGSGSISVEYKPFGVEMNFTPVVVDGDIINLTINAAVSSIDSTVTVQ 340 Query: 347 D----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + +++ R+ TTVE+ G + +AGLL+DD + L +P L IPILGALFR++ Sbjct: 341 NAGFTLNAFKRRETSTTVEMRDGESFAIAGLLQDDFRDLNGQVPWLGDIPILGALFRSAE 400 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 + R ++E+ I TP LV P L+ P D + + + F F + + G EV Sbjct: 401 YQRAQSELVIIVTPHLVTPTRGEALALPTDRIRIPTERELFLFGKTSGARGAT--GEVAR 458 Query: 463 QNYKGAIGFIYK 474 Q++ G+ G++ + Sbjct: 459 QDFSGSYGYVME 470 >gi|146276361|ref|YP_001166520.1| type II and III secretion system protein [Rhodobacter sphaeroides ATCC 17025] gi|145554602|gb|ABP69215.1| type II and III secretion system protein [Rhodobacter sphaeroides ATCC 17025] Length = 461 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 129/449 (28%), Positives = 220/449 (48%), Gaps = 28/449 (6%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 + +E +++ +N+ ++++ ++ +++P AD+ S ++Y+ GK G+ Sbjct: 29 TLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGKAPGRT 88 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 + L+G DG+ + N+D+ + D+A + LR+ + NI V +D +VL G V + + Sbjct: 89 TLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVTSAERL 148 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 RA++L+ + + +V NL+++ G QV LKV AE++R + K +G Sbjct: 149 DRALDLANRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKSLGSSI 196 Query: 218 SITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFETVLHALERATAI 269 S G G + + F +L ALE + Sbjct: 197 YARNGSGSVIGGTGTLLQNGIPPSGAPITTAATGALGLGFSVGALEFSVLLEALESKGVV 256 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 RTLAEP LTA+SGQ A F +GG++ S ++ +GV L+FTP V+ +I Sbjct: 257 RTLAEPNLTALSGQEAKFLAGGEYPIPVASGDE-KIAIEYKPFGVELNFTPVVVDGSQIN 315 Query: 330 LRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L I VS V+ + +++ R+ TTVE+ G + +AGLL+DD + L + Sbjct: 316 LMINAAVSSIDNTVSLESAGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRNLNGQV 375 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P L IPILGALFR++ + R ++E+ I TP LV P L+ P D + + + F F Sbjct: 376 PWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRIKLPSEKELFLF 435 Query: 446 NRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 RV G A EV Q++ G+ G++ + Sbjct: 436 GRVT---GRGAAGEVARQDFSGSYGYVME 461 >gi|114764946|ref|ZP_01444119.1| bacterial type II/III secretion system protein [Pelagibaca bermudensis HTCC2601] gi|114542658|gb|EAU45682.1| bacterial type II/III secretion system protein [Roseovarius sp. HTCC2601] Length = 471 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 136/455 (29%), Positives = 234/455 (51%), Gaps = 32/455 (7%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 ++ V G +S+ +N+ ++++ ++ +++P AD+ S RT+Y+ GK G Sbjct: 29 SLRVVRTGTESVLSVPMNRAVVVESDRPFAELSIANPAIADISSLSDRTIYVLGKTPGTT 88 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 + ++ +G+ + N+D+ + D+ + LR+ + + I V +D +VL G + + Q Sbjct: 89 TLTILDANGRLITNVDVRVAADVTEFKERLRQILPNEPIEVRTANDGIVLSGTISSAQKL 148 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 QRA++L+E + + ++V NL+ + G QV LKV AE++R + K + Sbjct: 149 QRALDLAERY------------APERVSNLMTVGGVQQVMLKVRFAEMQRSVAKNLRSSL 196 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSV-------KGVLDRFSFET-----VLHALER 265 S+TG+ G ++ A G + + G+ S+ L F+ +L ALE Sbjct: 197 SVTGTLFGNDETTLASETGTLIGQSGNTSINVNDDAEGAFLLGFNSGALQVGILLEALES 256 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 RTLAEP LTA+SGQ A F +GG++ VS G T V+ +GV L+F P V+ Sbjct: 257 KGISRTLAEPNLTALSGQEARFLAGGEYPVP-VSQDDGTTIVSYKPFGVELNFVPRVVDG 315 Query: 326 GRIGLRIQTEVSEP--VIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 I L ++ VS G+ G++ ++R R+ TTVE+ G + +AGLL+DD + L Sbjct: 316 DLINLELEAAVSSIDSSNGITTGEITIDAFRRRETSTTVEMRDGESFAIAGLLQDDFRDL 375 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P L IP+LGALFR++ + RE++E+ I TP LV P L+ P D + Sbjct: 376 NGQVPWLGDIPVLGALFRSAEYEREQSELVIIVTPHLVTPTRGEVLALPTDRVRPPTEKD 435 Query: 442 AFFFNRV---NKIYGPKEASEVEGQNYKGAIGFIY 473 F + R + A+EV Q++ G+ G++ Sbjct: 436 LFLYGRTASDTRRPQSGGAAEVAKQDFTGSYGYVM 470 >gi|218516388|ref|ZP_03513228.1| pilus assembly secretion protein [Rhizobium etli 8C-3] Length = 436 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 217/441 (49%), Positives = 288/441 (65%), Gaps = 25/441 (5%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 +NK +++ +P D D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G++++NLD Sbjct: 1 MNKAVVVDLPEDAHDILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLD 60 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 I IERD++ LE LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL Sbjct: 61 IEIERDVSGLEANLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEA 120 Query: 174 NQYANSSS-----------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 ++S +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF Sbjct: 121 TTRTETASGTGGDSAVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFD 180 Query: 217 HSITGSSSGPSKSFA---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 + I+ SS AD V G K + ++ T L+ALE+A +RTLA Sbjct: 181 NLISNSSGMTVAQLGTPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLA 240 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 EPTLTAISGQ+A+F SGGQ LY T + + G +V +YG+ L F P VLS GRI L I+ Sbjct: 241 EPTLTAISGQAATFNSGGQQLYST-TDNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIK 299 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 T VSEPV G +Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKIP+ Sbjct: 300 TNVSEPVAGSGNA---TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPL 356 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+YG Sbjct: 357 LGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYG 416 Query: 454 PKEASEVEGQNYKGAIGFIYK 474 +EA + Q + G+IGFIYK Sbjct: 417 RREAPVADAQ-FHGSIGFIYK 436 >gi|84687277|ref|ZP_01015157.1| Outer membrane general secretion pathway protein, Secretin [Maritimibacter alkaliphilus HTCC2654] gi|84664710|gb|EAQ11194.1| Outer membrane general secretion pathway protein, Secretin [Rhodobacterales bacterium HTCC2654] Length = 474 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 139/482 (28%), Positives = 231/482 (47%), Gaps = 38/482 (7%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 L S +P A + ++ G + +++ +N+ ++++ ++ +++ Sbjct: 9 AALTGLALSWITVPLPGMAQ----TLRVMDGGVAETLNVPMNRAVVVESDQPFAEISIAN 64 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 P AD+ S RT+Y+ GK+ G+ + L+ DG + N+++ + D++ + LR+ + Sbjct: 65 PGIADISTLSDRTIYVLGKSQGRTTLTLLAPDGTLISNVEVQVTPDLSEFKERLRQILPG 124 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 I V +D +VL G V +I RA++L+E + + KV NLL++ G Sbjct: 125 EPIEVRTANDGIVLSGTVTSIAALDRALDLAERY------------APDKVSNLLSVGGT 172 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----------FGGKFVSEG 242 QV LKV AE++R + K + + +G S G +S G Sbjct: 173 QQVMLKVRFAEMQRSVTKSLSSSLGFGTNINGLGGSIGTGALGNQANLDAASAGDLISTG 232 Query: 243 ----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G F+ F +L ALE +RTLAEP LTA+SGQ ASF +GG++ +V Sbjct: 233 NDRTGAFTFGFNAGALQFAVMLEALENKGMVRTLAEPNLTALSGQEASFLAGGEYPIPSV 292 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVR 354 GA + +GV L FTP V+ I L++ VS V GD + +++ R Sbjct: 293 -QENGAVVIDYKPFGVELTFTPRVVDQDIINLQMTASVSGLDNSVTYGDGAISVNAFKRR 351 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + TTVE+ G + +AGLL+DD + L +P L +PILGALFR++ + R ++E+ I Sbjct: 352 ETSTTVEMRDGQSFAIAGLLQDDFRDLNGQVPWLGDVPILGALFRSADYERSQSELVIIV 411 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK--EASEVEGQNYKGAIGFI 472 TP LV P L+ P D +A F P A EV Q++ G+ G++ Sbjct: 412 TPHLVTPTRGEALALPTDRVRPPSEADLFLRGNTAAPNRPTTGAAGEVARQDFTGSYGYV 471 Query: 473 YK 474 + Sbjct: 472 ME 473 >gi|146338123|ref|YP_001203171.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278] gi|146190929|emb|CAL74934.1| putative Pilus assembly protein cpaC; putative signal peptide [Bradyrhizobium sp. ORS278] Length = 500 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 163/478 (34%), Positives = 266/478 (55%), Gaps = 36/478 (7%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 + NP++A + AA + + +++G+ K +++ +P D++DVLV+DP A Sbjct: 34 TLNPALAPVIAADYRPAAAAPPAADGQINARFLALGVGKSVVIDLPRDIKDVLVADPKIA 93 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 + VV S + Y+ G VGQ N++ G+Q+ DI ++RD+ L++ + +++I+ Sbjct: 94 NAVVRSSQRAYIIGAAVGQTNIVFFDAQGQQIAAYDIAVKRDLNGARAALKQLLPNADIQ 153 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 +E + D +VL G + ++Q+A EL+ + +KV+N + + G DQV Sbjct: 154 IEGLGDGIVLTGSASSQIEAQQAGELAARLAGGA----------EKVVNSITVRGRDQVM 203 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSVKGVLD 252 LKVT+AEV+R ++KQ+G S + FA +G VS + G Sbjct: 204 LKVTVAEVQRSVVKQLGIDLSGQLNYGTAVVKFANSNPFTAYGSNLVSNNAVSAAFG--S 261 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSV 307 S + L A+E A IRTLAEP LTAISG+SA+F +GG+ ++ T + Sbjct: 262 TPSVQATLRAMENAGVIRTLAEPNLTAISGESATFIAGGEFPVPAGYSCDPTTHVCTTQI 321 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------------PVIGVNAGDMPSYRVR 354 + +G+ L+FTP VLS GRI +R+ TEVSE VN+ +PS + R Sbjct: 322 SFKKFGISLNFTPIVLSEGRISMRVMTEVSELSNENSITLSQAVSSTTVNSLTVPSIKTR 381 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +A+TT+E+PSGG + +AGL++ +Q G+P L ++P+LGALFR+ + +TE+ + Sbjct: 382 RAETTLEIPSGGAMAMAGLIQQQTKQAISGMPGLMQLPVLGALFRSRDYVNNQTELMVLV 441 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 TPF+V+ V+ +DLSRPDD ++ D +A +N+IYG +E G+NY+G GFI Sbjct: 442 TPFVVRAVSQKDLSRPDDGFAAASDPQADLLGSINRIYGVPGRTE-PGRNYRGTYGFI 498 >gi|241518288|ref|YP_002978916.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862701|gb|ACS60365.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 512 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 204/459 (44%), Positives = 290/459 (63%), Gaps = 23/459 (5%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 VI++++ + + +SIGLNK +I+++P D D++VSDP +D +V + RT++LFGK VG Sbjct: 57 VISVTETGVNVTRHVSIGLNKTLIVELPQDAHDIVVSDPGVSDAIVRATRTIFLFGKKVG 116 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 Q N+ ++ + + ++N+DI +ERDIA LE LRR I D+ I+VE++SD +VL G VR+ Q Sbjct: 117 QTNIFILDANKRPIVNIDIAVERDIAGLETDLRRLIPDAAIKVEIISDNIVLTGTVRSAQ 176 Query: 156 DSQRAVELSETFLSQSGRNQ-----------------YANSSSKKVMNLLNIAGEDQVTL 198 DS +A +L+ F+ + K++NLL IA +DQV L Sbjct: 177 DSAQAADLASAFVKGGEATTRTQSASSGGSQGSVALVAEDRQESKIINLLRIAADDQVML 236 Query: 199 KVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 K+TIAEV+R+ILKQ+GF + + GS+ + + D G G + Sbjct: 237 KMTIAEVKREILKQLGFDNELKNAGGSTIAQLGTASTDATTATSGGGLSALFSGSFGKHG 296 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 T L+ALE+A +RTLAEPTLTA+SGQSASF +GG+ LY + + G T+ T + YG+ Sbjct: 297 LSTTLNALEQAKVVRTLAEPTLTAVSGQSASFQAGGEVLY-SNTDRDGNTTQTPYSYGIS 355 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L F P VL+ GRI L+I TEVSEPV ++ G P+Y R TTVELPSGG+I LAGL++ Sbjct: 356 LSFKPIVLTSGRISLQISTEVSEPVTSIS-GSSPTYGKRSTSTTVELPSGGSIALAGLIR 414 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 D+ + G P+L+KIP GALFR + F R ETE+ I ATP+LV+PVA +DL+RPDD+ S Sbjct: 415 DNFNRTSNGTPVLNKIPGFGALFRQTSFERNETELVIIATPYLVRPVAAKDLNRPDDNLS 474 Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 DDA +R+NK+YG + E Q Y G +GFIYK Sbjct: 475 PADDASQGLLDRINKLYGNGKTLEPTAQ-YHGTVGFIYK 512 >gi|86748907|ref|YP_485403.1| type II and III secretion system protein [Rhodopseudomonas palustris HaA2] gi|86571935|gb|ABD06492.1| type II and III secretion system protein [Rhodopseudomonas palustris HaA2] Length = 479 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 163/481 (33%), Positives = 270/481 (56%), Gaps = 21/481 (4%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 R+++ T M++ + + P+K ++ + +++G+ K +++ Sbjct: 8 RFIRTLTGTAMAVSAVVALTMLPPWTPVKASDYRATTTQTGGGMNARPLALGIGKSVVID 67 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 +P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI + RD+ Sbjct: 68 LPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTRDLN 127 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + L++ I +++IRVE + D V+L G V T ++Q+A +L+ + Sbjct: 128 GIRAALQQSIPNADIRVEGLGDGVILMGSVATPIEAQQAADLAARLAGDA---------- 177 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 KV+N + I G DQV LK+T+AEV+RDI+KQ+G + S SF + Sbjct: 178 SKVVNNIAIRGRDQVMLKITVAEVQRDIVKQLGVDLTANLSYGTSVVSFTNTNPFTQSGQ 237 Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G+ + S L A+E A +RTLAEP LTAISG+ ASF +GG+ + Sbjct: 238 ALVSGNALTTSFGNGPSITATLKAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPVPSG 297 Query: 299 SSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSY 351 + T A SV+ +GV+L+FTP VLS GRI L++ TEVSE + ++ +PS Sbjct: 298 VTCTNAVCTPSVSYKKFGVLLNFTPVVLSEGRISLKVATEVSEVSSDNSVTISGTTVPSI 357 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R+ D+TVE+PSGG++ +AGL+++ +Q G+P +++IPILG LFR+ + ++E+ Sbjct: 358 KTRRVDSTVEIPSGGSLAMAGLIQEQTKQAINGMPGMTQIPILGTLFRSRDYINRQSELM 417 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471 + TP++V+ VA +DLSRPDD ++ D ++ +N+IYG + + Q Y+G GF Sbjct: 418 VLVTPYVVRAVAPKDLSRPDDGFADASDPQSDLLGSINRIYGVPGRTG-QSQTYRGRFGF 476 Query: 472 I 472 I Sbjct: 477 I 477 >gi|239833237|ref|ZP_04681566.1| type II and III secretion system protein [Ochrobactrum intermedium LMG 3301] gi|239825504|gb|EEQ97072.1| type II and III secretion system protein [Ochrobactrum intermedium LMG 3301] Length = 507 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 196/510 (38%), Positives = 289/510 (56%), Gaps = 39/510 (7%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKE-ANAAVINISDVEIGKGKKISIGLNKVII 59 MR R I L + + LP A AA + + + I +GLNK ++ Sbjct: 1 MRKTNRVRPYSARIALLAGALATVSLPLADMTAMAAAGIVKVGSQQRSQTIKLGLNKSVV 60 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 L +P D DVLVS+PT AD V + R +YLFGK VGQ N+ + G +G+Q+ ++D+ IERD Sbjct: 61 LDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGQNGEQVASIDVEIERD 120 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--SQSGRNQYA 177 ++ L L+R I S+IRVE+++D VVL G V+T QDS +A +L+ F+ ++ QY+ Sbjct: 121 VSGLSSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQYS 180 Query: 178 NSSS-------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 ++S ++N+L I GEDQVTLKVT+AEV R ++KQ+G + Sbjct: 181 TTASAPTDGGGVAINNPDWGRRQSAIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVNMT 240 Query: 219 ITGSSSGPS-KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 +G S+G S + + G + D L +F L A+E A ++TLAEPTL Sbjct: 241 GSGVSNGISYGGISENIAGAIGNNLSDTGFG--LATSNFSAYLRAMESAGVMKTLAEPTL 298 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 TAISG+ A+F GG++ + + +YG+ L F PTVL PGRI L+I+ Sbjct: 299 TAISGEKAAFNVGGEYNVINSVTYDDDGKRTNQLAKINYGIGLEFMPTVLGPGRISLKIR 358 Query: 334 TEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 T VSEP + S R R ADTTVELPSGG++++ GL++D+++Q G Sbjct: 359 TSVSEPTTEGAGTTNKMEGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSG 418 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 P L+KIP+LGALFR+ F R E+E+ + TP+L +PVA + L+RPDD+ + D + Sbjct: 419 FPGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDNLNPASDGAGYI 478 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +VN++YG E G+ Y G +G+IYK Sbjct: 479 LGKVNRVYGTMETKLPPGR-YNGVVGYIYK 507 >gi|39936740|ref|NP_949016.1| type II and III secretion system protein [Rhodopseudomonas palustris CGA009] gi|192292566|ref|YP_001993171.1| type II and III secretion system protein [Rhodopseudomonas palustris TIE-1] gi|39650596|emb|CAE29119.1| putative exporter protein, cpaC [Rhodopseudomonas palustris CGA009] gi|192286315|gb|ACF02696.1| type II and III secretion system protein [Rhodopseudomonas palustris TIE-1] Length = 480 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 163/481 (33%), Positives = 271/481 (56%), Gaps = 30/481 (6%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK----GKKISIGLNKVIILQVP 63 F+ +I L S+ ++ +P +A+ + V + IS+G+ K +++ +P Sbjct: 12 FWRGTAIAL-SAAVALTLIPSWTAVHASDYRAAPVPPASSGLNAQSISLGIGKSMVIDLP 70 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI + RD+ L Sbjct: 71 RDIKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIVFFDSAGRQIAAYDIAVTRDLNGL 130 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 L++ + ++ I+VE + D V+L+G V + D+Q+A +L+ + + KK Sbjct: 131 RTALKQTLPNAEIQVEGLGDGVMLNGWVTSPIDAQQAYDLAVRLVGED----------KK 180 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 V+N + + G DQV LK+T+AEV+RDI+KQ+G S + +F + F GG Sbjct: 181 VVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLSANMAYGTAVVNF--NNSNPFTQSGG 238 Query: 244 DFSVKGVLDR-----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 L S L A+E A +RTLAEP LTAISG+ A+F +GG+ + Sbjct: 239 PLVSSNALTTKFGSLPSVTATLRAMESAGVVRTLAEPNLTAISGEPATFLAGGEFPVPSG 298 Query: 299 SSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSY 351 + T SVT +G++L+FTP V++ GRI L++ TEVSE ++ +PS Sbjct: 299 VTCTNGVCTPSVTFKKFGILLNFTPVVMTAGRISLKVMTEVSEVSSDNSVIISNMSVPSI 358 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R+ ++TVE+PSGG++ +AGL+++ +Q G+P +++PILG LFR+ + +TE+ Sbjct: 359 KTRRVESTVEIPSGGSLAMAGLIQEQTKQAINGMPGAAQLPILGTLFRSRDYINRQTELM 418 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471 + TP++V+ VA +DLSRPDD ++ D ++ +NK+YG +E + Y+G GF Sbjct: 419 VLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSINKLYGVPGRTE-PARTYRGRFGF 477 Query: 472 I 472 I Sbjct: 478 I 478 >gi|255262444|ref|ZP_05341786.1| outer membrane general secretion pathway protein, Secretin [Thalassiobium sp. R2A62] gi|255104779|gb|EET47453.1| outer membrane general secretion pathway protein, Secretin [Thalassiobium sp. R2A62] Length = 480 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 140/478 (29%), Positives = 233/478 (48%), Gaps = 28/478 (5%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T+ M L + + +P A + + +++ +N+ ++++ V Sbjct: 19 TYDRFMKAALMGLFVATSSVPAAVSAE----TLRVMRGAPSSALNVPMNRAVVVESDVPF 74 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 ++ +++P AD+ S RT+Y+ GK G+ + L+G DG+ + N+D+ + DIA + Sbjct: 75 AELSIANPGIADISTLSDRTIYVLGKLPGRTTLTLLGPDGRLITNVDVHVTPDIAEFKER 134 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L + + NI V +D +VL G+V + RA++L+E + + +V N Sbjct: 135 LSQILPGENIEVRTANDGIVLSGVVSSSARLTRALDLAERY------------APDRVSN 182 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADFGGKFVSEG 242 L+++ G QV L+V AE++R + K + +I G +++G A GG Sbjct: 183 LMSVGGTQQVMLRVRFAEMQRSVRKSLSSSVNIFGTGFSTAAGNINGVQAAGGGITTDAT 242 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G F +L ALE +RTLAEP LTA+SGQ A F +GG++ V+ Sbjct: 243 GAAFFGIDAGDIQFNVLLEALESKGVVRTLAEPNLTALSGQEAHFLAGGEYPVP-VAQEG 301 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-----DMPSYRVRKAD 357 G T+V D+GV L F P V+ I L ++ VS + ++R R+ Sbjct: 302 GTTTVEYKDFGVELTFLPVVVDQDLINLTLKASVSSIDTTNGVQVGSDFTIAAFRTRETS 361 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTVE+ G + +AGLL+DD L +P L +P+LGALFR++ +NR ++E+ I TP Sbjct: 362 TTVEMRDGESFAIAGLLQDDFTDLNGQVPWLGDVPVLGALFRSAEYNRSQSELVIIVTPH 421 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFIY 473 LV P L+ P D + F F RV P+ A EV Q++ G+ G++ Sbjct: 422 LVTPTRGEALALPTDRVRPPTERDLFLFGRVAASDAPQSGAAGEVAKQDFSGSYGYVM 479 >gi|56697919|ref|YP_168290.1| type II/III secretion system protein [Ruegeria pomeroyi DSS-3] gi|56679656|gb|AAV96322.1| bacterial type II/III secretion system protein [Ruegeria pomeroyi DSS-3] Length = 475 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 231/472 (48%), Gaps = 31/472 (6%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 + ++A P A A + + V+ G + + + +N+ I+++ ++ +++ AD Sbjct: 19 TGLALACSPMTGLAQAQDLRV--VKQGAAETLDVPMNRAIVVESETPFAELSIANAGIAD 76 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 + S RT+Y+ GK+ G + L G+ + N+++ + D+A + L++ + + I V Sbjct: 77 ISSLSDRTIYVLGKSPGLTTLSLFDAGGRLITNVNVRVSFDVAEFKERLKQILPNEKIEV 136 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 +D +VL G + QRA++L+E + + ++V NL+++AG QV L Sbjct: 137 RTANDGIVLSGTASSTARLQRALDLAERY------------APERVSNLMSVAGVQQVML 184 Query: 199 KVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFAADFGGKFVS---EGGDFSVK 248 KV AE++R + K + ++G ++ S S GG + G Sbjct: 185 KVRFAEMQRSVSKSLSASLGVSGGNIVGGLNTLNSSGSLTNAIGGSIPALNDNAGAILFG 244 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 +L ALER +RTLAEP L+A+SGQ A F +GG++ V+ G +V Sbjct: 245 FSAGSTQVRLLLEALERKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQRDGLFTVE 303 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPS 364 +GV + F P V+ I L + VS + VN D+ +++ R+ TTVEL Sbjct: 304 YKPFGVEMAFIPRVVDGDLINLELLAAVSSLDPNNSVTVNGFDIAAFQRRETSTTVELKD 363 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G + +AGL++D+ + +P L +P+LGALFR++ + R +TE+ I T LV P Sbjct: 364 GESFAIAGLIEDEFLDNNQQLPWLGDVPVLGALFRSANYQRSQTELVIIITAHLVSPTRG 423 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFIYK 474 L+ P D +A F + + + ASEV Q++ G+ G++ + Sbjct: 424 EALALPTDRVKPPSEADLFLRGKTARTERARGGAASEVARQDFSGSYGYVLE 475 >gi|110636321|ref|YP_676529.1| type II and III secretion system protein [Mesorhizobium sp. BNC1] gi|110287305|gb|ABG65364.1| type II and III secretion system protein [Chelativorans sp. BNC1] Length = 516 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 196/497 (39%), Positives = 287/497 (57%), Gaps = 54/497 (10%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86 P I + A + +V +++ +GLNK ++L +P D D+LV++P AD V + R Sbjct: 25 PVIIPSAARGEGVIEVSGAGTERLKLGLNKTLVLDLPSDAYDILVANPAVADAVTRTARR 84 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 +YLFGK VG+ N+ + G G+Q+ +D+ +ERD+A LE L+RFI +SNI VE+++D VV Sbjct: 85 IYLFGKQVGETNIFVFGAGGEQIARIDVAVERDVAGLEQYLKRFIPNSNIDVELINDNVV 144 Query: 147 LHGMVRTIQDSQRAVELSETFL--SQSGRNQYANSSS-------------------KKVM 185 L G V T D+ RA +L+ F+ ++ QY+ +++ K++ Sbjct: 145 LTGTVETPLDASRAAQLATIFVTGGEATTGQYSQTAAAPTDGGGVAISNPDSARQVSKIV 204 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGG 243 N+L I GEDQVTLKVT+AEV R ++KQ+G +GS G S D +G + Sbjct: 205 NMLQIIGEDQVTLKVTVAEVSRSVMKQLGVNMIGSGSLDGISWGAIVDSPYGLGAPASAS 264 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT------ 297 ++ G L + L+A+E+A ++TL+EPTLTAISG+ A+F GG+ T Sbjct: 265 QLALGGSL----LQGYLNAMEQAGVMKTLSEPTLTAISGEKATFKVGGEFNLVTGQKVEQ 320 Query: 298 -----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------------ 340 + V DYG+ L FTPTVLSPGRI L+++T VSEP Sbjct: 321 GDASKGQADQLTYEVEKIDYGIGLEFTPTVLSPGRISLKVRTSVSEPTFEGSFSLGSPSI 380 Query: 341 ---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + S R R ADTTVELPSGG++++AGL++DD++Q G+P LSKIPILG L Sbjct: 381 GGRFNSPGMNALSIRKRLADTTVELPSGGSMMIAGLVRDDVRQTINGLPGLSKIPILGTL 440 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 FR+ F R ETE+ I TP+L +PVA L+RPDD+++ D F RVN+IYG + Sbjct: 441 FRSRDFVRNETELVIIITPYLARPVARTALARPDDNFNPPSDGAGIFLGRVNRIYGAMKT 500 Query: 458 SEVEGQNYKGAIGFIYK 474 + +G+ Y G +G+IYK Sbjct: 501 NLPKGR-YHGVVGYIYK 516 >gi|84501676|ref|ZP_00999848.1| bacterial type II/III secretion system protein [Oceanicola batsensis HTCC2597] gi|84390297|gb|EAQ02856.1| bacterial type II/III secretion system protein [Oceanicola batsensis HTCC2597] Length = 474 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 132/490 (26%), Positives = 234/490 (47%), Gaps = 39/490 (7%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T+ + + LF + P +A ++ V ++++ +N+ ++++ V Sbjct: 2 TYSSYLRAALFGMTLATGSFPVTAQAE----RLTIVNRNSESRLNVAINRAVVVESDVSF 57 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 ++ +++P AD+ S ++Y+ GK G + L+ +G+ + N+D+++ DI+ + Sbjct: 58 AELSIANPQIADISSLSDTSIYVLGKTPGITTLTLLDAEGRLISNVDVVVSADISEFKER 117 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 LR+ + D I V +D +V+ G+V + Q QRA++L+E + + ++V N Sbjct: 118 LRQILPDEKIEVRTANDGIVMSGVVSSSQKLQRALDLAERY------------APERVSN 165 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------- 235 L+++ G QV LKV AE++R + K + + GS G + + G Sbjct: 166 LMSVGGVQQVMLKVRFAEMQRSVSKSLSASLAADGSIFGGNVGVSGGTGRYSNAGNQGNG 225 Query: 236 -----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + G + +L ALE +RTLAEP LTA+SGQ A F +G Sbjct: 226 LGGNLPTPNTNSGATLLGFNAGAVQVGVLLEALEAKGVVRTLAEPNLTALSGQEAKFLAG 285 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAG 346 G++ V+ G +V +GV ++F P V+ I L +Q VS +NA Sbjct: 286 GEYPVP-VAQDGGTVTVEFKPFGVEMNFIPRVVDDDIINLELQAAVSAIDPNNGFELNAF 344 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + ++ R+ TTVEL G + +AGLL+DD + +P L IP++GALFR++ + R Sbjct: 345 RIDAFTRRETSTTVELRDGDSFAVAGLLQDDFRDTNSQVPWLGDIPVIGALFRSADYQRN 404 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK--IYGPKEASEVEGQN 464 ++E+ I T LV P L+ P D + F F R K A EV Q+ Sbjct: 405 QSELVIIITAHLVSPTRGEALALPTDRVKPPSEKDLFLFGRTAKDTRKLRGAAKEVAKQD 464 Query: 465 YKGAIGFIYK 474 + G+ G++ + Sbjct: 465 FNGSYGYVME 474 >gi|27376550|ref|NP_768079.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27349691|dbj|BAC46704.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 496 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 159/493 (32%), Positives = 263/493 (53%), Gaps = 34/493 (6%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 MR + + NP++ + AA ++ + +S+G+ K I++ Sbjct: 15 MRTSMVRALSFSAALALVLNPALTPVVAADYRPAAP--VAADGQMNARFLSLGVGKSIVI 72 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI ++RD+ Sbjct: 73 DLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSAGQQIAAYDIAVKRDL 132 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + L++ + +S+I+++ + + +VL G ++Q+A +L+ + Sbjct: 133 NGVRAALKQILPNSDIQIDGLGEGIVLTGTAANPMEAQQANDLAARLAGGA--------- 183 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 KV+N + + G DQV LKVT+AEV R I+KQ+G + + +F+ + Sbjct: 184 -DKVVNSIVVRGRDQVMLKVTVAEVARSIVKQLGIDLTANLNYGTSVVTFSNSNPFTALG 242 Query: 241 EG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + G+ S + L A+E A IRTLAEP LTAISG+SA+F +GG+ Sbjct: 243 KNLVDGNSLTTKFGATPSVQATLRAMETAGVIRTLAEPNLTAISGESATFIAGGEFPVPA 302 Query: 298 V-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------------P 339 ++ T ++ +G+ L+FTP VL+ G+I LR+ TEVSE Sbjct: 303 GYACDPTTHVCTTQISFKKFGISLNFTPVVLTEGKISLRVMTEVSELSNENAITLSQAVT 362 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 VN+ +PS + R+A+T++E+PSGG + +AGL++ +Q G+P L ++PILG LFR Sbjct: 363 STSVNSLTVPSIKTRRAETSLEIPSGGAMAMAGLIQQQTKQAVSGLPGLMQLPILGTLFR 422 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + F TE+ + TP++V+ VA +DLSRPDD +S D + +N+IYG +E Sbjct: 423 SRDFVNNATELVVIVTPYIVRAVAQKDLSRPDDGFSAPADPQVELLGNINRIYGVPGRTE 482 Query: 460 VEGQNYKGAIGFI 472 G+NY+G GFI Sbjct: 483 -PGRNYRGTYGFI 494 >gi|148258235|ref|YP_001242820.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1] gi|146410408|gb|ABQ38914.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1] Length = 497 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 162/476 (34%), Positives = 266/476 (55%), Gaps = 35/476 (7%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 + NP++A + A +D +I + +++G+ K +++ +P D++DVLV+DP A Sbjct: 34 TLNPALAPVIAADYHPAVTAAAADGQI-NARFLALGVGKSVVIDLPRDIKDVLVADPKIA 92 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 + VV S + Y+ G VGQ N++ G+Q+ DI ++RD+ L++ + +S+I+ Sbjct: 93 NAVVRSSQRAYIIGATVGQTNIVFFDAQGQQIAAYDIAVKRDLNGARAALKQLLPNSDIQ 152 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 +E + D++VL G + ++Q+A EL+ + KV+N + + G DQV Sbjct: 153 IEGLGDSIVLSGSAASQIEAQQAGELAARLAGGA----------DKVVNSITVRGRDQVM 202 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---RF 254 LKVT+AEV+R ++KQ+G S + FA F + G + ++ Sbjct: 203 LKVTVAEVQRSVVKQLGIDLSGQLNYGTAVVKFAN--SNPFTAYGSNLVSNNAINASFGS 260 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTT 309 S + L A+E A IRTLAEP LTAISG+SA+F +GG+ ++ T ++ Sbjct: 261 SVQATLRAMENAGVIRTLAEPNLTAISGESATFIAGGEFPVPAGYSCDPTTHVCTTQISF 320 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------------PVIGVNAGDMPSYRVRKA 356 +G+ L+FTP VL+ GRI LR+ TEVSE VN+ +PS + R+A Sbjct: 321 KKFGISLNFTPVVLAEGRISLRVMTEVSELSNENSITLSQAVTSSTVNSLTVPSIKTRRA 380 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +TT+E+PSGG + +AGL++ +Q G+P L ++P+LG LFR+ + +TE+ + TP Sbjct: 381 ETTLEIPSGGAMAMAGLIQQQTKQAISGMPGLMQLPVLGTLFRSRDYVNNQTELMVLVTP 440 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 F+V+ VA +DLSRPDD ++ D +A +N+IYG E G++Y+G GFI Sbjct: 441 FVVRAVAQKDLSRPDDGFAAASDRQADLLGSINRIYGVPGRVE-PGRSYRGTYGFI 495 >gi|163738370|ref|ZP_02145785.1| bacterial type II/III secretion system protein [Phaeobacter gallaeciensis BS107] gi|161388291|gb|EDQ12645.1| bacterial type II/III secretion system protein [Phaeobacter gallaeciensis BS107] Length = 484 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 127/474 (26%), Positives = 232/474 (48%), Gaps = 32/474 (6%) Query: 18 SSNPSVAKLPPIKEANAAVIN-ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 ++ + L A+AA N + V+ G + + +N+ ++++ V ++ +++P+ Sbjct: 24 AAALTGLSLVCFPVADAAWGNGLRVVKKGTAANLEVPMNRAVVVESDVPFSELSIANPSI 83 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ + LR+ + I Sbjct: 84 ADISSLSDRTIYVLGKSPGLTTLTLLDASGRLITNVDVRVAADVSEFKERLRQILPGEKI 143 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 V +D +VL G+V + QRA++L+E + + ++V NL+++ G QV Sbjct: 144 EVRTANDGIVLSGVVSSSARLQRALDLAERY------------APERVSNLMSVGGVQQV 191 Query: 197 TLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPSKSFAADFGGKFVS---EGG 243 LKV AE++R + K + + S+ + G + G Sbjct: 192 MLKVRFAEMQRTVSKSLSASLGVKGGNSVGVNGGTSTLNTQGALTNSLSGNIPAGNDNTG 251 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F F +L ALE+ +RTLAEP L+A+SGQ A F +GG++ V+ G Sbjct: 252 AFVFGFNAGAFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDG 310 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTT 359 ++ +G+ L+F P V+ I L ++ VS +N + ++ R+ TT Sbjct: 311 IITIEFKPFGIELNFVPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRETSTT 370 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VEL G + +AGL++D+ + +P + +P+LG+LFR++ + R +TE+ I + LV Sbjct: 371 VELRDGESFAIAGLIRDEFRDSSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLV 430 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 P LS P D +++ F RV K ASEV Q++ G+ G++ Sbjct: 431 TPTRGEALSLPTDRIRPPSESELFLMGRVAKGQ-KGPASEVAKQDFNGSYGYVM 483 >gi|154250689|ref|YP_001411513.1| type II and III secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154639|gb|ABS61856.1| type II and III secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 491 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 164/470 (34%), Positives = 258/470 (54%), Gaps = 29/470 (6%) Query: 23 VAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81 V+ +A ++ I IG+ + I +GLNK I+++P+ +DVLVS+P D VV Sbjct: 31 VSPAGGAFAGDARLVKIDQGGIGQSSRSIVLGLNKAAIVELPIAARDVLVSNPAIVDAVV 90 Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141 + + YL G VGQ N G+Q+LNL+I + RD+ L +LR++ + I VE + Sbjct: 91 RTNKRTYLIGLAVGQTNAFFFNEAGQQILNLEIRVARDLTGLRESLRQYFPKARIDVESI 150 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 +D VVL GMV + D+ +A + + ++ + V+N+L I G++QV LKVT Sbjct: 151 NDHVVLSGMVASATDASKAQDFAARYIG---------GDKEHVLNMLGIEGKEQVMLKVT 201 Query: 202 IAEVRRDILKQIGFQHSITGSSS------GPSKSF---AADFGGKFVSEGGDFSVKGVLD 252 +AE++R+++KQ+G S + S SF GG + + Sbjct: 202 VAEMQRNVIKQLGVDLSTAANFGDFALRLATSNSFSVQGGSLGGLTTAADAADPTRYQSG 261 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + ++ + ALER +RTLAEP LTAISG+SA F +GG+ T G + + Sbjct: 262 DVTVDSAIRALERDGILRTLAEPNLTAISGESAKFLAGGEFPVPTSRDRDGNVQLEFKPF 321 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRKADTTVELP 363 GV L+FTP VLS GRI L+I TEVSE + +P +VR+A+TT+ELP Sbjct: 322 GVGLNFTPVVLSEGRISLKISTEVSELTSEGAFVFQSTSADGVTVPGLKVRRAETTLELP 381 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SGG++V+AGLL D ++Q +G+P + +P+LG LFR+ + + ETE+ + TP+LV P + Sbjct: 382 SGGSLVMAGLLSDTMRQNIDGVPGVKDVPVLGQLFRSRDYQKNETELVVIVTPYLVDPTS 441 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 ++L P D ++ D R+N YG + A+ + + +G +GFI Sbjct: 442 RKNLVLPTDGFAPASDMDTILMGRLNATYGARGAAPGD-HSLQGPVGFIV 490 >gi|153008059|ref|YP_001369274.1| type II and III secretion system protein [Ochrobactrum anthropi ATCC 49188] gi|151559947|gb|ABS13445.1| type II and III secretion system protein [Ochrobactrum anthropi ATCC 49188] Length = 507 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 194/509 (38%), Positives = 286/509 (56%), Gaps = 37/509 (7%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKE-ANAAVINISDVEIGKGKKISIGLNKVII 59 MR +R + L +S + LP A AA + + + I +GLNK ++ Sbjct: 1 MRKTKRVRPYSAKVALLTSALAAFSLPLTDMSAMAAAGVVKVGSQQRSQTIKLGLNKSVV 60 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 L +P D DVLVS+PT AD V + R +YLFGK VGQ N+ + G +G+Q+ ++D+ IERD Sbjct: 61 LDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGPNGEQVASIDVEIERD 120 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG------- 172 ++ + L+R I S+IRVE+++D VVL G V+T QDS +A +L+ F+S Sbjct: 121 VSGISSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQFT 180 Query: 173 --------------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 N N + ++N+L I GEDQVTLKVT+AEV R ++KQ+G + Sbjct: 181 TTASAPTDGGGVAINNPDRNRRASAIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVNMA 240 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 +G S+G S ++ + + G L +F L A+E A ++TLAEPTLT Sbjct: 241 GSGVSNGISYGGISESIAGAIGNNLSDTGFG-LATSNFSAYLRAMESAGVMKTLAEPTLT 299 Query: 279 AISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 AISG+ A+F GG++ + +YG+ L F PTVL PGRI L+I+T Sbjct: 300 AISGEKAAFNVGGEYNVINSVKYDDDGKRTNELAKINYGIGLEFMPTVLGPGRISLKIRT 359 Query: 335 EVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 VSEP + S R R ADTTVELPSGG++++ GL++D+++Q G Sbjct: 360 SVSEPTTEGAGTTNKMDGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGF 419 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P L+KIP+LGALFR+ F R E+E+ + TP+L +PVA + L+RPDD+ + D + Sbjct: 420 PGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDNLNPASDGAGYIL 479 Query: 446 NRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +VN++YG E G+ Y G +G+IYK Sbjct: 480 GKVNRVYGTMETKLPPGR-YNGVVGYIYK 507 >gi|254466441|ref|ZP_05079852.1| bacterial type II/III secretion system protein [Rhodobacterales bacterium Y4I] gi|206687349|gb|EDZ47831.1| bacterial type II/III secretion system protein [Rhodobacterales bacterium Y4I] Length = 468 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 124/477 (25%), Positives = 230/477 (48%), Gaps = 33/477 (6%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 + S+ +P A A + + V+ G + + +N+ ++++ + ++ +++ Sbjct: 7 VAAALMGLSLIGVPQADGAWAQSLRV--VKKGTAATLDVPMNRAVVVESEIPFAELSIAN 64 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 P+ AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D+ + LR+ + + Sbjct: 65 PSIADISSLSDRTIYVLGKSPGLTTLTLLDGSGRLITNVDVRVAADVTEFKQRLRQILPN 124 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 I V +D +VL G V + QRA++L+E + + ++V NL+++ G Sbjct: 125 EKIEVRTANDGIVLSGTVSSSARLQRALDLAERY------------APERVSNLMSVGGV 172 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG----------SSSGPSKSFAADFGGKFVS--- 240 QV LKV AE++R + K + G ++ S + A G + Sbjct: 173 QQVMLKVRFAEMQRSVSKSLSASLGFNGGTGNGRTGGYNTLNTSGALANSLAGNIPAANE 232 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G F +L ALE+ +RTLAEP L+A+SGQ A F +GG++ V+ Sbjct: 233 NTGAFLFGFNAGSVQVSLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPVP-VAQ 291 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKA 356 G ++ +G+ L+F P V+ I L + VS ++ + ++ R+ Sbjct: 292 EGGVITIEFKPFGIELNFIPRVIDGDLINLELNAAVSAIDPTNSLELSGLTIDAFSRRET 351 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 TTVE+ G + +AGL++D+ +P L +P+LGALFR++ + RE+TE+ I + Sbjct: 352 STTVEMRDGESFAIAGLIRDEFLDNSSQLPWLGDVPVLGALFRSADYQREQTELVIIVSA 411 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 LV P L+ P D + + F F R ++ A+EV Q++ G+ G++ Sbjct: 412 HLVTPTRGEALTLPTDRVAPPSEKDLFLFGRTSRNRAGP-AAEVAKQDFNGSYGYVL 467 >gi|254501806|ref|ZP_05113957.1| Putative phospholipid-binding domain family [Labrenzia alexandrii DFL-11] gi|222437877|gb|EEE44556.1| Putative phospholipid-binding domain family [Labrenzia alexandrii DFL-11] Length = 483 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 169/482 (35%), Positives = 275/482 (57%), Gaps = 22/482 (4%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 +R F ++ S + A +EA + I+++ E + +++G+ + +++ Sbjct: 16 IRRSGLRFCAFAAVMGLVSFMAPASWS--QEAFPSQIHVAAGERATDRILNVGIGRSVVI 73 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + D DVLVS+P AD V+ +PR +++ G GQA ++L G G+++ + DI +E+D Sbjct: 74 NLAEDAADVLVSNPQIADAVLRTPRRIFVLGNTAGQARLVLFGRSGRELASFDIRVEKDT 133 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + + +RR I ++++ E ++ VVL G ++ ++Q+A +++ F + Sbjct: 134 SDITRIIRRLIPGTSVQAESINGKVVLSGTAKSTLEAQQAADIAAKFQGDETGSA----- 188 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 ++NL+ ++G DQV LKVT+AEV R I+KQ+G +G F ++F V+ Sbjct: 189 ---IVNLIAVSGSDQVHLKVTVAEVERSIIKQLGVSFQAN-LGAGNFFPFGSNFPNFNVN 244 Query: 241 EG----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 V S + AL+R IRTLAEPTLTA SG++ASF +GG+ Sbjct: 245 PSIVNQATGGVTFSSGTSSLTAQVEALQRDGVIRTLAEPTLTATSGENASFLAGGEFPIP 304 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYR 352 ++ SV +GV L FTP VL+ GRI LR++TEVSE + + + + Sbjct: 305 -IAQEDNQISVEFKKFGVGLDFTPIVLTGGRISLRVKTEVSELSNEGAVSAGGITISALK 363 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 VR+A++T+ELPSGGT+V+AGLL++ QQ EG+P L +IP+LGALF++ F +++TE+ + Sbjct: 364 VRRAESTMELPSGGTLVMAGLLEESYQQAVEGVPGLMQIPVLGALFKSRDFLKQQTELAV 423 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 TP++VKPVA + + RPD + DA+A F NR+NKI+ P A E Y G +GFI Sbjct: 424 FVTPYVVKPVAAQKMVRPDKNLFAPSDAEAIFLNRLNKIFNP--AGEQAQGTYHGQVGFI 481 Query: 473 YK 474 YK Sbjct: 482 YK 483 >gi|85713505|ref|ZP_01044495.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A] gi|85699409|gb|EAQ37276.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A] Length = 477 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 168/489 (34%), Positives = 269/489 (55%), Gaps = 44/489 (8%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 + F+ NP++A P+ ++ V + + +S+G+ K +++ +P DV+DVLV+D Sbjct: 1 MGAFTLNPALA---PVFASDYRVSAATTGAKMHTQSLSLGIGKSVVVDLPRDVKDVLVAD 57 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 P A+ VV S + Y+ G VGQ N+I G+Q+ DI + RD+ L L++ + + Sbjct: 58 PKIANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQQISAYDIAVTRDLNGLRAALKQLLPN 117 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 + I+V+ + D V+L G V + ++Q+A +L+ +KV+N + + G Sbjct: 118 AAIKVDGLGDGVMLSGWVSSPIEAQQAGDLAARLAD----------GVQKVVNNIAVRGR 167 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----GKFVSEGGDFSVKG 249 DQV LKVT+AEV R I+KQ+G S + +F+ G+ + G + S Sbjct: 168 DQVMLKVTVAEVARTIIKQMGIDLSANMNYGTAVVNFSNSNPFTALGRPLVSGNNLSGSA 227 Query: 250 VLDRF------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 L S + L A+E A IRTLAEP LTAISG+SA+F SGG+ Sbjct: 228 GLTNLLPGQAGYPGVVPSVQATLRAMESAGVIRTLAEPNLTAISGESATFISGGEFPIPA 287 Query: 298 VSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--------- 343 S A T + +G+ L+FTP VL+ GRI LR+ TEVSE Sbjct: 288 GYSCDPATRVCLTQIRFKKFGISLNFTPVVLTEGRISLRVMTEVSELSTENAMTITQTIG 347 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 N+ +PS R R+A+TT+E+PSGG++ +AGL+++ +Q G+P L+++P+LGALFR+ + Sbjct: 348 NSLTVPSIRTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGLTQLPVLGALFRSRDY 407 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 +TE+ + TP++V+ VA +DLSRPDD ++ D ++ +N+IYG E + Sbjct: 408 VNGQTELVVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSINRIYGAPGRVE-PAR 466 Query: 464 NYKGAIGFI 472 +Y+G GFI Sbjct: 467 HYRGTYGFI 475 >gi|126729098|ref|ZP_01744912.1| bacterial type II/III secretion system protein [Sagittula stellata E-37] gi|126710088|gb|EBA09140.1| bacterial type II/III secretion system protein [Sagittula stellata E-37] Length = 473 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 130/488 (26%), Positives = 228/488 (46%), Gaps = 38/488 (7%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 TF + L +A + P A++ I V G +S+ +N+ ++++ Sbjct: 2 TFDGYLKAALCGLALGIATMSPPAHADS----IRVVRTGTESVLSVPMNRAVVVESDTPF 57 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 ++ +++P+ AD+ S RT+Y+ GK G + ++ G+ + N+D+ + D+ + Sbjct: 58 AELSIANPSIADISSLSDRTIYVLGKQPGTTTLTILDPQGQLITNVDVRVAADVTEFKER 117 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L + + + I V +D +VL G V +I +RA++L++ + + +V N Sbjct: 118 LTQILPEERIEVRTANDGIVLSGTVSSIARMERALDLAQRY------------APDRVSN 165 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-------- 238 L+ + G QV LKV AE+RR + K + + GS+ G Sbjct: 166 LMVVGGIQQVMLKVRFAEMRRSVSKALRASLATGGSTGDLGVELGTGNAGTLAERDLVAD 225 Query: 239 ------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + G +L ALE +RTLAEP LTA+SGQ ASF +GG+ Sbjct: 226 KLFPRRLGTEGAVLFGFNAGGLEVGILLEALESKGMVRTLAEPNLTALSGQEASFLAGGE 285 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDM 348 + T + +V +GV L F P V+ I L ++ VS I + Sbjct: 286 YPVPTAQGDN-SVTVEFKPFGVELAFVPRVIDGDLINLELEAAVSSVDSANGITFQDVTI 344 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + R+A TTVEL G + +AGLL+++ L +P + +PILGALFR++ + RE++ Sbjct: 345 AGFARREAKTTVELRDGESFAIAGLLQENFADLNGQVPWIGDVPILGALFRSTEYQREQS 404 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN---KIYGPKEASEVEGQNY 465 E+ I TP LV P L+ P D ++ + + F +++ + A+EV Q++ Sbjct: 405 ELVIIVTPHLVTPTRGEALALPTDRVTLPSERQLFLNGKIDGNGRRPRSGAAAEVANQDF 464 Query: 466 KGAIGFIY 473 G+ G++ Sbjct: 465 NGSYGYVM 472 >gi|163742213|ref|ZP_02149601.1| bacterial type II/III secretion system protein [Phaeobacter gallaeciensis 2.10] gi|161384543|gb|EDQ08924.1| bacterial type II/III secretion system protein [Phaeobacter gallaeciensis 2.10] Length = 484 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 126/474 (26%), Positives = 233/474 (49%), Gaps = 32/474 (6%) Query: 18 SSNPSVAKLPPIKEANAAVIN-ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 ++ + L A+AA N + V+ G + + +N+ ++++ V ++ +++P+ Sbjct: 24 AAALTGLSLVCFPVADAAWGNGLRVVKKGTAANLEVPMNRAVVVESDVPFSELSIANPSI 83 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ + LR+ + I Sbjct: 84 ADISSLSDRTIYVLGKSPGLTTLTLLDASGRLITNVDVRVAADVSEFKERLRQILPGEKI 143 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 V +D +VL G+V + QRA++L+E + + ++V NL+++ G QV Sbjct: 144 EVRTANDGIVLSGVVSSSARLQRALDLAERY------------APERVSNLMSVGGVQQV 191 Query: 197 TLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPSKSFAADFGGKFVS---EGG 243 LKV AE++R + K + + S+ + G + G Sbjct: 192 MLKVRFAEMQRTVSKSLSASLGVKGGNSVGVNGGTSTLNTQGALTNSLSGNIPAANDNTG 251 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F F +L ALE+ +RTLAEP L+A+SGQ A F +GG++ V+ G Sbjct: 252 AFVFGFNAGAFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDG 310 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTT 359 ++ +G+ L+F P V+ I L ++ VS +N + ++ R++ TT Sbjct: 311 VITIEFKPFGIELNFIPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRESVTT 370 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VE+ G + +AGL++D+ + +P + +P+LG+LFR++ + R +TE+ I + LV Sbjct: 371 VEMRDGESFAIAGLIRDEFRDNSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLV 430 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 P LS P D +++ F RV K ASEV Q++ G+ G++ Sbjct: 431 TPTRGEALSLPTDRIRPPSESELFLMGRVAKGQ-KGPASEVAKQDFNGSYGYVM 483 >gi|86137993|ref|ZP_01056569.1| bacterial type II/III secretion system protein [Roseobacter sp. MED193] gi|85825585|gb|EAQ45784.1| bacterial type II/III secretion system protein [Roseobacter sp. MED193] Length = 459 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 130/476 (27%), Positives = 233/476 (48%), Gaps = 32/476 (6%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 M+ L + +P + AN + V+ G + + +N+ ++++ ++ + Sbjct: 1 MAAALTGLSLLSIAVPEMGLAN----GLRVVKRGTSVTLDVPMNRAVVVESDDPFAELSI 56 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 ++P AD+ S RT+Y+ GK+ G + L+ GK + N+++ + D++ + LR+ + Sbjct: 57 ANPNIADISSLSDRTIYVLGKSPGLTTLTLLDASGKLITNVNVRVAADVSEFKERLRQIL 116 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 I V +D +VL G V + QRA++L+E + + ++V NL+++ Sbjct: 117 PGEQIEVRTANDGIVLSGNVSSAARLQRALDLAERY------------APERVSNLMSVG 164 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSE------- 241 G QV LKV AE++R + K + ++ G++SG + + G + Sbjct: 165 GVQQVMLKVRFAEMQRSVSKALHSSVALGSQNGNASGETGQWLFGNNGLGNTPIEVKDGI 224 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + + +L ALE+ +RTLAEP L+A+SGQ A F +GG++ VS Sbjct: 225 AGALAFQFGVGSLQVGLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VSQD 283 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKAD 357 G +V +G+ L+F P V+ I L ++ VS + N + ++ R+ Sbjct: 284 GGTVTVEFKPFGIELNFIPRVVDGDVINLELKAAVSAIDTSNTVTANGLSIAAFSRRETS 343 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTVEL G + +AGL++DD IP + +P+LGALFR++ + RE+TE+ I + Sbjct: 344 TTVELRDGESFAVAGLVQDDFLDNTSQIPWIGDVPVLGALFRSADYQREQTELVIIVSAH 403 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 LV P LS P D +++ F R ASEV Q++ G+ G++ Sbjct: 404 LVTPTRGEALSLPTDRIKPPSESELFLLGRTVHSQ-KGPASEVAKQDFNGSYGYVM 458 >gi|91977985|ref|YP_570644.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB5] gi|91684441|gb|ABE40743.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB5] Length = 480 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 162/484 (33%), Positives = 271/484 (55%), Gaps = 27/484 (5%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 +R L+ T + ++ + P++A + + + + + + +++G+ K +++ Sbjct: 10 IRTLKGTAMALSAVVALTLFPTLAPVQASDYRD-TPARMGNSGL-NARPLALGIGKSVVI 67 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P D++DVLV+DP A+ VV S + Y+ G VGQ N++ G+Q+ DI + RD+ Sbjct: 68 DLPRDIKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTRDL 127 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + LR+ I +++I+VE + D V+L G V T ++Q+A +L+ + Sbjct: 128 NGIRTALRQSIPNADIQVEGLGDGVMLIGSVATPIEAQQAADLAARLAGDAS-------- 179 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 KV+N + + G DQV LK+T+AEV+RDI+KQ+G + + + F+ F Sbjct: 180 --KVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLTASMNYGTSVVKFSNT--NPFTQ 235 Query: 241 EGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 GG L S L A+E A +RTLAEP LTAISG+ ASF +GG+ Sbjct: 236 SGGPLVANNALTTSFGSGPSVSATLRAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPV 295 Query: 296 K---TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDM 348 T ++S SVT +GV+L+FTP VL+ GRI L++ TEVSE + + Sbjct: 296 PSGVTCTNSLCTPSVTFKKFGVLLNFTPVVLTEGRISLKVSTEVSEVSSDNSIVIGGLSV 355 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS + R+ ++TVE+PSGG++ +AGL+++ +Q G+P ++++PILG LFR+ + +T Sbjct: 356 PSIKTRRIESTVEIPSGGSLAMAGLIQEQTKQAINGLPGMTQLPILGTLFRSRDYINRQT 415 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 E+ + TP++V+ VA +DLSRPDD ++ D ++ +N+IYG + Q Y+G Sbjct: 416 ELMVMVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGNINRIYGVPGRTG-PAQTYRGR 474 Query: 469 IGFI 472 GFI Sbjct: 475 FGFI 478 >gi|260461949|ref|ZP_05810194.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259032196|gb|EEW33462.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 505 Score = 368 bits (945), Expect = e-99, Method: Composition-based stats. Identities = 191/501 (38%), Positives = 298/501 (59%), Gaps = 45/501 (8%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 + ++ + + + + +++ +GLNK +++ +P D D+LV++P Sbjct: 9 AIVAAAFGLLLVGTNVQGVVEAKSTQVTATTASQRVKLGLNKSVVIDLPSDAYDILVANP 68 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + AD V + R +YLFGK VG+ N+ + G +G+Q+ +LD+ +ERD+A LE +RRFI S Sbjct: 69 SVADAVTRTARRIYLFGKAVGETNIFVFGPNGEQIASLDLAVERDVAGLEDYIRRFIPTS 128 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--SQSGRNQYANSS------------ 180 +I+VE+++D VVL G V T DS+RAV+L+ F+ ++ QY+ ++ Sbjct: 129 DIKVELLNDNVVLTGTVDTPLDSKRAVDLATIFVSGGEATTGQYSQTAAGGSAQSGVDIN 188 Query: 181 -------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 + K++NLL I G+DQVTLKVT+AEV R ++KQ+G +G S+G S +D Sbjct: 189 NPDQERRTSKIVNLLQIIGDDQVTLKVTVAEVSRSVMKQLGVNMVGSGGSNGISYGALSD 248 Query: 234 FGGKFVSEGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 F G S G ++ + ++A+E++ ++TLAEPTLTA+SG+ A+F GG+ Sbjct: 249 ---PFTGLGKPLSNAGFSINASGLQAYINAMEQSGVMKTLAEPTLTAVSGEKATFKVGGE 305 Query: 293 HLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-- 341 + T S+ + SV +YG+ L F P VLSPGRI L+++T VSEP Sbjct: 306 YNMVTGVSANVSADNQTGLKTYSVDKIEYGIGLEFQPVVLSPGRISLKVRTSVSEPTTEG 365 Query: 342 --------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + S R R ADTTVELPSGG++++AGL++DD++Q G+P L+KIP+ Sbjct: 366 SVSSSTSNTSVGMNALSLRKRLADTTVELPSGGSMMIAGLVRDDVRQAVNGLPGLTKIPV 425 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LGALFR+ F R ETE+ I TP+LVKPVA DL++PDD+++ D A F +VN++YG Sbjct: 426 LGALFRSRDFVRNETELVIIITPYLVKPVARNDLAKPDDNFNAASDGAAMFLGKVNRVYG 485 Query: 454 PKEASEVEGQNYKGAIGFIYK 474 + + G+ Y G +G+IYK Sbjct: 486 TMQTDKPNGR-YHGVVGYIYK 505 >gi|316933039|ref|YP_004108021.1| type II and III secretion system protein [Rhodopseudomonas palustris DX-1] gi|315600753|gb|ADU43288.1| type II and III secretion system protein [Rhodopseudomonas palustris DX-1] Length = 478 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 156/483 (32%), Positives = 268/483 (55%), Gaps = 27/483 (5%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG--KGKKISIGLNKVIILQ 61 L+ T + S+ + +P A+A+ + G + +++G+ K +++ Sbjct: 7 LRSTRSLRGTAIALSTAAVLTLIPAWTAAHASDYRAAPAASGGLNAQSVALGIGKSMVID 66 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 +P D++DVLV+DP A+ V+ S + Y+ G VGQ N++ G+Q+ DI + RD+ Sbjct: 67 LPRDIKDVLVADPKIANAVIRSAQRAYIIGAAVGQTNIVFFDSTGRQIAAYDIAVTRDLN 126 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + L++ + ++I+VE + + V+L+G V + ++Q+A +L+ + Sbjct: 127 GIRTALKQTLPTADIQVEGLGEGVMLNGSVASPIEAQQAFDLAARLVGDD---------- 176 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 KKV+N + + G DQV LK+T+AEV+RDI+KQ+G S + +F + F Sbjct: 177 KKVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLSANMAYGTAVVNF--NNTNPFTQS 234 Query: 242 GGDFSVKGVLDR-----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G L S L A+E A +RTLAEP LTAISG+ A+F +GG+ Sbjct: 235 GSALVPNNALTTKFGSLPSVTATLRAMESAGVVRTLAEPNLTAISGEPATFLAGGEFPVP 294 Query: 297 TVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMP 349 + + T SV +G++L+FTP V++ GRI L++ TEVSE +N+ +P Sbjct: 295 SGVTCTNGVCTPSVVFKKFGILLNFTPVVMTAGRISLKVMTEVSEVSSDNAVVINSLSVP 354 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 S + R+ ++T+E+PSGG++ +AGL+++ +Q G+P +++PILG LFR+ + +TE Sbjct: 355 SIKTRRVESTLEIPSGGSLAMAGLIQEQTKQAINGMPGAAQLPILGTLFRSRDYINRQTE 414 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 + + TP++V+ VA +DLSRPDD ++ D ++ +NK+YG SE + Y+G Sbjct: 415 LMVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSLNKLYGAPGRSE-PARTYRGRF 473 Query: 470 GFI 472 GFI Sbjct: 474 GFI 476 >gi|90419764|ref|ZP_01227673.1| Flp pilus assembly protein, secretin CpaC (type II and type III secretion system) [Aurantimonas manganoxydans SI85-9A1] gi|90335805|gb|EAS49553.1| Flp pilus assembly protein, secretin CpaC (type II and type III secretion system) [Aurantimonas manganoxydans SI85-9A1] Length = 540 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 192/535 (35%), Positives = 283/535 (52%), Gaps = 70/535 (13%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 +R R +M+ + P LP +A V+N+ + I++GLNK ++ Sbjct: 15 LRARLRKLVVVMAAASTALAPLATTLP--AQAEQTVVNVRQ----GSQSINLGLNKTKVI 68 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + D D+LV++P AD V R +Y+FGK +GQ N+++ +Q+ ++D+ IERDI Sbjct: 69 VLEADAHDILVANPAVADAVTRDARRIYIFGKQIGQTNIVVFDRQNRQIASIDLKIERDI 128 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--SQSGRNQYAN 178 LE T+R+++ S ++VEM++D VVL+G V+T QD+ + L+ F+ + QY Sbjct: 129 NGLEATIRKYVPSSVVQVEMLNDNVVLNGTVQTPQDAAKVERLARLFVTGGEGTTGQYIQ 188 Query: 179 SSS---------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 ++ +++NLL I GEDQVTLKVT+AEV+R ++KQ+G Sbjct: 189 QATASGGAGGGDGDVGFAQEDRRQSQIVNLLQIQGEDQVTLKVTVAEVQRSVVKQLGINS 248 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + G S + G + F L+A+E+A +RTLAEP+L Sbjct: 249 TAGKGVTYGQTDSPFALGKALSSSM--LASAGSIGGFDITAQLNAMEQAGVMRTLAEPSL 306 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV-----------------------------T 308 TAISG+ ASF GG+ S T T Sbjct: 307 TAISGEKASFKVGGEFTVPDAQSYDPGTPARREFQGYDGSGQAIYDTIPAEPPTRSIDKT 366 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTT 359 +YG+ L FTP VLSPGRI L+I+T VSEP + R R ADTT Sbjct: 367 RVEYGIGLDFTPVVLSPGRISLKIRTAVSEPTFEMPFNISGGKDGGVGTVGIRKRLADTT 426 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VELPSGG++V+AGL++D+++Q+ G P LSKIP+LG LFR+ F R ETE+ I TP+LV Sbjct: 427 VELPSGGSLVIAGLVRDEVRQVMSGFPGLSKIPVLGTLFRSRDFQRYETELVIIVTPYLV 486 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +PV + L+RPDD +++ D A F RVN++YG E G+ Y G +GFIYK Sbjct: 487 RPVPRQALARPDDGFALSSDGAANFLGRVNRVYGHMETKLPPGR-YHGVVGFIYK 540 >gi|75674499|ref|YP_316920.1| type II and III secretion system protein [Nitrobacter winogradskyi Nb-255] gi|74419369|gb|ABA03568.1| type II and III secretion system protein [Nitrobacter winogradskyi Nb-255] Length = 493 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 160/485 (32%), Positives = 263/485 (54%), Gaps = 35/485 (7%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEI-GKGKKISIGLNKVIILQVPVDVQDVL 70 ++ + A L P+ ++ V + + +S+G+ K +++ +P DV+DVL Sbjct: 18 LAFAAIGAFTLDAALTPVFASDYRVSGAATAGANMHAQSLSLGIGKSVVVDLPRDVKDVL 77 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V+DP A+ VV S + Y+ G VGQ N+I G+Q+ DI + RD+ L L++ Sbjct: 78 VADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQQISAYDIAVTRDLNGLRTALKQL 137 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + ++ I+V+ + D V+L G V ++Q+A +L+ + +KV+N + + Sbjct: 138 LPNAAIKVDGLGDGVMLSGWVSNPIEAQQAGDLAARLTDGA----------QKVVNNIAV 187 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS---------ITGSSSGPSKSFAADFGGKFVSE 241 G DQV LKVT+AEV R ++KQ+G S + +++ P + + Sbjct: 188 RGRDQVMLKVTVAEVARTVIKQMGIDLSASMNYGTAVVNFTNANPFTALGRPLTNNSAAA 247 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 ++ G + L A+E A IRTLAEP LTAISG+SA+F SGG+ S Sbjct: 248 SFGSTMVGGAPVPAVTATLRAMESAGVIRTLAEPNLTAISGESATFISGGEFPIPAGFSC 307 Query: 302 TGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---------NAGD 347 A T + +G+ L+FTP VL+ GRI LR+ TEVSE N+ Sbjct: 308 DPATRVCLTQIRFKKFGISLNFTPVVLTEGRISLRVMTEVSELSNENSMTLNQSVGNSLT 367 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +PS R R+A+TT+E+PSGG++ +AGL+ +Q+ G+P ++++P+LGALFR+ + + Sbjct: 368 VPSIRTRRAETTLEIPSGGSMAMAGLIHQQTKQVINGLPGIAQVPVLGALFRSRDYVNGQ 427 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 TE+ + TP++V+ VA +DLSRPDD ++ D ++ +N+IYG E ++Y+G Sbjct: 428 TELMVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSLNRIYGAPGRVE-PARHYRG 486 Query: 468 AIGFI 472 GFI Sbjct: 487 TYGFI 491 >gi|299132286|ref|ZP_07025481.1| type II and III secretion system protein [Afipia sp. 1NLS2] gi|298592423|gb|EFI52623.1| type II and III secretion system protein [Afipia sp. 1NLS2] Length = 490 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 165/482 (34%), Positives = 264/482 (54%), Gaps = 23/482 (4%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG--KGKKISIGLNKVIILQVPVD 65 +S S+ + L P+ + V + S + + +G++K +++ +P D Sbjct: 13 IARALSFVAVSALILNSSLSPVLATDYQVASASTASADSLNARSLRLGISKSLVVDLPRD 72 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 V+DVLV+DP A+ VV S R Y+ G VGQ N+I DG+QM D+ + RD+ + Sbjct: 73 VKDVLVADPKIANAVVRSSRRAYIIGAAVGQTNIIFFDADGQQMAAYDVAVTRDLNGIRT 132 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 + + + S+I+VE + D VVL G ++Q+A EL+ + + ++ V+ Sbjct: 133 AIHQALPQSDIQVEGLGDGVVLTGSAANQAEAQQAYELAARLIGGPSK------ANDLVV 186 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--AADFGGKFVSEGG 243 N + + G DQV LKVT+AEV+R+I+KQ+G S S F A F + Sbjct: 187 NNITVRGRDQVMLKVTVAEVQRNIVKQLGVDLSGKFSYGTAVVDFNNANQFSALGHALAP 246 Query: 244 DFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---- 298 D ++ S + L A+E A +RTLAEP LTAISG+SA+F +GG+ T Sbjct: 247 DNAISTSFGSAPSVKATLRAMESAGVVRTLAEPNLTAISGESATFIAGGEFPIPTGITCQ 306 Query: 299 ----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPS 350 +SS S+ +G+ L+FTP VL+ GRI LR+ TEVSE + V+ +PS Sbjct: 307 TAAGTSSNCQPSIAFKKFGISLNFTPVVLTEGRISLRVMTEVSEISNDNSLTVSGMTIPS 366 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R+A+TT+E+PSGG++ +AGL+++ +Q G+P L+++P+LG LFR+ F +TE+ Sbjct: 367 IKTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGLAQLPVLGTLFRSRDFINNQTEL 426 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 + TP++V+ VA +DLSRPDD ++ D + + +IYG +Y+G G Sbjct: 427 MVLVTPYVVRAVAQKDLSRPDDGFASASDPQTVLLGNITRIYGVPRREGQASSSYRGKYG 486 Query: 471 FI 472 FI Sbjct: 487 FI 488 >gi|254463467|ref|ZP_05076883.1| bacterial type II/III secretion system protein [Rhodobacterales bacterium HTCC2083] gi|206680056|gb|EDZ44543.1| bacterial type II/III secretion system protein [Rhodobacteraceae bacterium HTCC2083] Length = 474 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 142/491 (28%), Positives = 239/491 (48%), Gaps = 42/491 (8%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 + T+ + FL + A + P A+A + I V G + I +N+ ++++ V Sbjct: 2 KKLNTLRAAFLGCAVLFTASVAP---AHADTLRI--VRSGSSSTLPIPMNRAVVVESDVP 56 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 ++ +++P+ AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ + Sbjct: 57 FAELSIANPSIADISTLSDRTVYVLGKSPGLTTLTLLDDAGRLITNVDVRVSADVSEFKE 116 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 LR+ + I V +D +VL G V + RA++L++ + + ++V Sbjct: 117 RLRQILPGEKIEVRTANDGIVLSGTVSSAGKVDRAMDLAQRY------------APERVT 164 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILK-----------QIGFQHSITGSSSGPSKSFAADF 234 NLL+++G QV LKV AE++R + K +G S+ G ++ + A+ Sbjct: 165 NLLSVSGVQQVMLKVRFAEMQRSVSKSLSSSLALGGSALGGNLSVRGGTNTLASGAASSA 224 Query: 235 GGKFVSEGGDFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + + + L F+ +L ALE +RTLAEP LTA+SGQ A F + Sbjct: 225 AIAGTAPANNANNGATLFGFNAGGLEVGILLEALESKGMVRTLAEPNLTALSGQEAKFLA 284 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNA 345 GG++ SSS + +GV L F P VL I L + EVS + Sbjct: 285 GGEYPIPVQSSS--GVQIQFKPFGVQLAFIPRVLDDKVINLELNAEVSSLDAANGIVSDG 342 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + +VR+ TTVE+ G + +AGLL+DD L +P L IP+LGALFR++ + R Sbjct: 343 FAISGLKVRRTSTTVEMRDGESFAIAGLLQDDFTDLSGQVPWLGDIPVLGALFRSADYKR 402 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE---ASEVEG 462 E++E+ I TP LV P L+ P D S + F F RV + A+EV Sbjct: 403 EQSELVIIVTPHLVTPTRGEALALPTDRISPPTEKDLFLFGRVTGDSRRPKKGAAAEVAR 462 Query: 463 QNYKGAIGFIY 473 Q++ G+ G++ Sbjct: 463 QDFTGSYGYVM 473 >gi|118589703|ref|ZP_01547108.1| pilus assembly protein [Stappia aggregata IAM 12614] gi|118437789|gb|EAV44425.1| pilus assembly protein [Stappia aggregata IAM 12614] Length = 483 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 173/473 (36%), Positives = 274/473 (57%), Gaps = 18/473 (3%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 ++ L A + + + ++I+ E G+ +++G+ + +++ + D D Sbjct: 22 LAATAVLLGGLMGVSAPVAQAEGNFPSQVHIAAGERATGRILNVGVGRSVVINLAEDAAD 81 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 VLVS+P AD V+ +PR +++ G GQ+ ++L G+++ + D+ +E+D + + +R Sbjct: 82 VLVSNPEIADAVLRTPRRIFVIGNTAGQSRLVLFSRSGRELASFDVRVEKDTSDITRIIR 141 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + I SNI E ++ +VVL G ++ ++Q+A +++ F + S+ +V+NL+ Sbjct: 142 KLIPGSNIFAESINGSVVLSGTAKSTLEAQQAADIAAKFQGAA--------SASEVVNLI 193 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 ++AG+DQV LKVT+AEV R I+KQ+G Q T + ++ + +V Sbjct: 194 SVAGKDQVHLKVTVAEVERSIIKQLGVQFQGTIGIGNFTPFMSSLPNFTVNPTIVNQAVG 253 Query: 249 G---VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 G S + AL+R IRTLAEPTLTAISG++ASF +GG+ +S G Sbjct: 254 GTQLTAGATSITAQVEALQREGVIRTLAEPTLTAISGENASFLAGGEFPIP-ISQRDGEL 312 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVE 361 SV +GV L FTP VLS GRI LR++TEVSE + + + +VR+A++T+E Sbjct: 313 SVEFKKFGVGLDFTPVVLSEGRISLRVKTEVSELSNDGAVSAGGITISALKVRRAESTME 372 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 LPSGGT+V+AGLL++ QQ EG+P L +IPILGALF++ F RE+TE+ + TP++V+P Sbjct: 373 LPSGGTLVMAGLLQESYQQAIEGVPGLMQIPILGALFKSRDFLREQTELAVFVTPYVVQP 432 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 VA+ L RPD + DA F NR+NKIY P A Y G +GFIYK Sbjct: 433 VAVSKLQRPDKNLMAPSDAGTIFLNRLNKIYNPTGA--AAEGTYHGQVGFIYK 483 >gi|260431084|ref|ZP_05785055.1| bacterial type II/III secretion system protein [Silicibacter lacuscaerulensis ITI-1157] gi|260414912|gb|EEX08171.1| bacterial type II/III secretion system protein [Silicibacter lacuscaerulensis ITI-1157] Length = 452 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 132/464 (28%), Positives = 214/464 (46%), Gaps = 29/464 (6%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 + P A N+ V+ G + + + +N+ I+++ ++ +++ AD+ S R Sbjct: 1 MSPAGYDAARAENLRVVKKGTAETLDVPMNRAIVVESETPFAELSIANAGIADISSLSDR 60 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 T+Y+ GK G + L G + N+ + + D+ + LR+ + + I V +D + Sbjct: 61 TIYVLGKAPGLTTLTLFDGAGNLIANVRVRVAPDVTEFKERLRQILPNERIEVRTANDGI 120 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 VL G V + RA+EL+E + + ++V NL+N+ G QV LKV AE+ Sbjct: 121 VLSGTVSSSAKLARALELAERY------------APERVSNLMNVGGVQQVMLKVRFAEM 168 Query: 206 RRDILKQIGFQHSITGS-------SSGPSKSFAADFGGKFV---SEGGDFSVKGVLDRFS 255 R + K + GS S S S + G S G Sbjct: 169 NRSVAKSLSASLGFGGSDVTGGINSLNNSFSLSNALGNNIPVSQSNTGAILFGFGAGSTQ 228 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 +L ALE R+LAEP L+A+SGQ A+F +GG+ V G ++ +GV Sbjct: 229 VRLLLEALEAKGLARSLAEPNLSALSGQEATFLAGGEVPIP-VPQDDGVVAIEYKSFGVE 287 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + F P V+ I L + VS +N +PS+ R+ TTVEL G + +A Sbjct: 288 IDFIPRVVDGDLINLEMAASVSAIDTSSDFTINGDSVPSFVTRQTSTTVELRDGESFAIA 347 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL++DD L IP L +P+LGALFR++ + RE++E+ I T LV P L+ P Sbjct: 348 GLIQDDFTDLSNQIPWLGDVPVLGALFRSAEYQREQSELVIIITAHLVSPTRGEALALPT 407 Query: 432 DHYSVEDDAKAFFFNRVNKIY--GPKEASEVEGQNYKGAIGFIY 473 D + F RV++ G ASEV Q++ + G++ Sbjct: 408 DRVKPPSEFDLFLNGRVSRTERAGNGAASEVANQDFGSSYGYVL 451 >gi|218680971|ref|ZP_03528868.1| putative pilus assembly protein [Rhizobium etli CIAT 894] Length = 434 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 215/438 (49%), Positives = 288/438 (65%), Gaps = 25/438 (5%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 +GLNK +++ +P D D+LVSDPT AD V + R +YLFGK VGQ N+ + G G++++N Sbjct: 2 LGLNKAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVN 61 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 LDI IERD++ LE+ LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL Sbjct: 62 LDIEIERDVSGLEVNLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGG 121 Query: 172 GRNQYANSSS-----------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 ++S +V+NLL I GEDQVTLKVTIAEVRR++LKQ+G Sbjct: 122 EATTRTETASGTGGDSSVALFAEGRQASQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLG 181 Query: 215 FQHSITGSSSGPSKSFA---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 F + ++ SS AD V G K + ++ T L+ALE+A ++T Sbjct: 182 FDNLVSNSSGMTVAQLGSPSADSATSTVGGGLAALFKSTIGKYDISTYLNALEQAKVVKT 241 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEPTLTAISGQ+A+F SGGQ LY T + S G +VT +YG+ L F P VLS GRI L+ Sbjct: 242 LAEPTLTAISGQAATFNSGGQQLYST-TDSDGNVTVTPFNYGINLAFKPVVLSSGRISLQ 300 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 I+T VSEPV G +Y+ R A+T+VELPSGG+I LAGL++D++ Q G P +SKI Sbjct: 301 IKTNVSEPVAGSGNA---TYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKI 357 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P+LG LFR F R+ETE+ I ATP+LV+PVA L+RPDD++S E+D FF NRVNK+ Sbjct: 358 PLLGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKV 417 Query: 452 YGPKEASEVEGQNYKGAI 469 YG +EA + Q + G+I Sbjct: 418 YGRREAPVADAQ-FHGSI 434 >gi|13474660|ref|NP_106229.1| exporter protein, cpaC [Mesorhizobium loti MAFF303099] gi|14025415|dbj|BAB52015.1| exporter protein; CpaC [Mesorhizobium loti MAFF303099] Length = 471 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 186/473 (39%), Positives = 291/473 (61%), Gaps = 45/473 (9%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 +++ +GLNK +++ +P D D+LV++PT AD V + R +YLFGK+VG+ N+ + Sbjct: 3 ATTATQRVKLGLNKSVVIDLPSDAYDILVANPTVADAVTRTARRIYLFGKSVGETNIFVF 62 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G +G+Q+ +LD+ +ERD+A LE +RRF+ S+++VE+++D VVL G V T D++RAV+ Sbjct: 63 GPNGEQIASLDLAVERDVAGLEDYIRRFLPTSDVKVELLNDNVVLTGTVDTPLDAKRAVD 122 Query: 163 LSETFL--SQSGRNQYANSSS-------------------KKVMNLLNIAGEDQVTLKVT 201 L+ F+ ++ QY+ +++ K++NLL I G+DQVTLKVT Sbjct: 123 LATIFVSGGEATTGQYSQTAAGGSAQGGVDINNPDQERRVSKIVNLLQIIGDDQVTLKVT 182 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFSFETVL 260 +AEV R ++KQ+G G S+G S +D F G S G + + + Sbjct: 183 VAEVSRSVMKQLGVNMVGNGGSNGISYGALSD---NFTGLGKQLSHSGFNIGNSALMAYI 239 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHD 311 +A+E++ ++TLAEPTLTA+SG+ A+F GG++ T S ++ ++ + Sbjct: 240 NAMEQSGVMKTLAEPTLTAVSGEKATFKVGGEYNLLTGVSQNVSSDNQTGLTTYTINKIE 299 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVE 361 YG+ L F P VLSPGRI L+++T VSEP + +M S R R ADTTVE Sbjct: 300 YGIGLEFQPVVLSPGRISLKVRTSVSEPTTEGSVALSNGVTSPGANMLSLRKRLADTTVE 359 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 LPSGG++++AGL++DD++Q G+P L+KIP+LGALFR+ F R E+E+ I TP+L KP Sbjct: 360 LPSGGSMMIAGLVRDDVRQAVNGLPGLTKIPVLGALFRSRDFVRNESELVIIITPYLAKP 419 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 VA DL++PDD+++ D A F +VN++YG + + G+ Y G +G+IYK Sbjct: 420 VARNDLAKPDDNFNPASDGAANFLGKVNRVYGTMQTDKPNGR-YHGVVGYIYK 471 >gi|90425197|ref|YP_533567.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB18] gi|90107211|gb|ABD89248.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB18] Length = 492 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 159/495 (32%), Positives = 266/495 (53%), Gaps = 35/495 (7%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 R ++ + ++ L P A+ + + + +++G++K +++ Sbjct: 7 RPMRSPLARALWFSAAAALTINPALAPALAADYRPMAAAADGQLNARFLALGVSKSVVID 66 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 +P D++DVLV+DP A+ VV S + Y+ G +GQ N++ G Q+ DI + RD+ Sbjct: 67 LPRDIKDVLVADPKIANAVVRSAQRAYIIGAAIGQTNIVFFDAAGLQIAAYDIAVTRDLN 126 Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + +++ + ++IRVE V +V+L G V + ++Q+A +L+ + Sbjct: 127 GIRAAMKQTLPGADIRVEGVGVKSVMLTGSVSSPIEAQQAGDLAARLVD----------G 176 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FG 235 V+N + + G DQV LKVT+AEV+RDI+KQ+G + + +F +G Sbjct: 177 PDNVVNSIAVRGRDQVMLKVTVAEVQRDIVKQLGVDLTARMNYGTAVVNFNNSNPFTAYG 236 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 VS + G S L A+E A +RTLAEP LTAISG+SA+F +GG+ Sbjct: 237 SNLVSGNATTASFGGGTTPSVTATLRAMESAGVVRTLAEPNLTAISGESATFVAGGEFPV 296 Query: 296 KTVSSST-----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------- 339 S T ++ +G+ L+FTP V+S GRI LR+ TEVSE Sbjct: 297 PAGYSCDPVTHVCTTQISFKKFGISLNFTPVVMSEGRISLRVMTEVSEISTDNSITLSQA 356 Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 N+ +PS + R+A+TT+E+PSGG++ +AGL+++ +Q G+P L+++P+LGAL Sbjct: 357 VSTTTTNSITVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAMNGLPGLAQLPVLGAL 416 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 FR+ + TE+ + TP++V+ VA +DLSRPDD ++ D +A +N+IYG + Sbjct: 417 FRSRDYVNRNTELLVLVTPYVVRAVAQKDLSRPDDGFAAASDPQADLIGNINRIYGVRGR 476 Query: 458 SEVEGQNYKGAIGFI 472 +E +NY+G GFI Sbjct: 477 TE-PAKNYRGTYGFI 490 >gi|319785608|ref|YP_004145084.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171496|gb|ADV15034.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 506 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 187/478 (39%), Positives = 289/478 (60%), Gaps = 45/478 (9%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 N +++ +GLNK +++ +P D D+LV++P AD V + R +YLFGK VG+ Sbjct: 33 NAQVTASTATQRVKLGLNKSVVIDLPSDAYDILVANPAVADAVTRTARRIYLFGKAVGET 92 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 N+ + G +G+Q+++LD+ +ERD+A LE +RRF+ S ++VE+++D VVL G V T D+ Sbjct: 93 NIFVFGPNGEQIVSLDLAVERDVAGLEDYIRRFLPTSAVKVELLNDNVVLTGTVDTPLDA 152 Query: 158 QRAVELSETFL--SQSGRNQYANSS-------------------SKKVMNLLNIAGEDQV 196 +RA +L+ F+ ++ QY+ ++ + +++NL+ I G+DQV Sbjct: 153 KRAEQLANMFVSGGEATTGQYSQTAAGGSAQSGVDINNPDQERRTSQIVNLIQIIGDDQV 212 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFS 255 TLKVT+AEV R ++KQ+G +G S+G S +D F G S G + Sbjct: 213 TLKVTVAEVSRSVMKQLGVNMVGSGGSNGISYGAISD---NFTGLGKQLSNSGFQIGASG 269 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------S 306 + ++A+E++ ++TLAEPTLTA+SG+ A+F GG++ T S+ + S Sbjct: 270 LQAYVNAMEQSGVMKTLAEPTLTAVSGEKATFKVGGEYNMVTGVSANVSQDNQTGLKTYS 329 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKA 356 V +YG+ L F P VLSPGRI L+++T VSEP + + S R R A Sbjct: 330 VEKIEYGIGLEFQPVVLSPGRISLKVRTSVSEPTTEGSVSFSSGVTSPGMNALSLRKRLA 389 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DTTVELPSGG++++AGL++DD++Q G+P L+KIP+LGALFR+ F R ETE+ I TP Sbjct: 390 DTTVELPSGGSMMIAGLVRDDVRQAVNGLPGLTKIPVLGALFRSRDFVRNETELVIIITP 449 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +LVKPVA DL++PDD+++ D F RVN++YG + + G+ Y G +GFIYK Sbjct: 450 YLVKPVARNDLAKPDDNFNAASDGAGMFLGRVNRVYGTMQTDKPNGR-YHGVVGFIYK 506 >gi|126725970|ref|ZP_01741812.1| Outer membrane general secretion pathway protein, Secretin [Rhodobacterales bacterium HTCC2150] gi|126705174|gb|EBA04265.1| Outer membrane general secretion pathway protein, Secretin [Rhodobacterales bacterium HTCC2150] Length = 466 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 132/482 (27%), Positives = 233/482 (48%), Gaps = 42/482 (8%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 + +V+ P A + V+ +++ +N+ I+++ +V V++P+ Sbjct: 1 MGLSLAVSTAPLSGYAE----TLKVVKGSPSNSLNVPMNRAIVVETETSFGEVSVANPSI 56 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 AD+ S +T+Y+ GK G+ + L+ G+ + N+D+ + D+A + L++ + I Sbjct: 57 ADISTLSDKTIYVLGKAPGRTTLTLLDGTGRLISNVDVHVTPDVAEFKERLQQILPGEPI 116 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 V +D +V+ G V +I RA++L+ + + +V NL+++ G QV Sbjct: 117 EVRTANDGIVMSGTVSSIGKLDRALDLANRY------------APNRVSNLMSVGGTQQV 164 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------------- 241 LK+ AE++R + K + + +GS G + + A S Sbjct: 165 MLKIRFAEMQRSVAKNLTGSLAFSGSLGGNAGATGASQTFSDGSNLANLYDGDSSTSATS 224 Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G FS+ F+ +L ALE +RTLAEP LTA+SGQ A F +GG++ Sbjct: 225 SQDRDGLFSIGFSNGTIGFQVLLEALETKGVVRTLAEPNLTALSGQKADFLAGGEYPTPA 284 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR----- 352 + G+ + +G+ + FTPTV+ I L+++T VS ++A + + Sbjct: 285 I-DDNGSPIIEYKPFGIEMEFTPTVVDGDLINLQLKTSVSSLDTSISAQNSAGFTVFGFK 343 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 RKA TTVE+ G + +AGLL+DD +P L +PI+GALFR+S + R+++E+ + Sbjct: 344 TRKASTTVEMRDGQSFAIAGLLQDDFTDQSGQVPWLGDVPIIGALFRSSEYERKQSELVV 403 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN-KIYGPKEASEVEGQNYKGAIGF 471 TP LV P L+ P D + + + F F V K A EV Q++ G+ G+ Sbjct: 404 IVTPHLVTPTRGEALALPTDRVQIPTERELFLFGNVAGKKKIKGAAGEVARQDFSGSYGY 463 Query: 472 IY 473 + Sbjct: 464 VM 465 >gi|294676059|ref|YP_003576674.1| type II and III secretion system protein [Rhodobacter capsulatus SB 1003] gi|294474879|gb|ADE84267.1| type II and III secretion system protein [Rhodobacter capsulatus SB 1003] Length = 469 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 128/465 (27%), Positives = 221/465 (47%), Gaps = 41/465 (8%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 A + V +++ +N+ ++++ ++ +++P ADV S +T+Y+ GK Sbjct: 23 PVAAETLRIVSGTGSTPLAVPMNRAVVVESDQPFSELSIANPGIADVTTLSDKTIYVLGK 82 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G+ + ++G DG + N+++ + DIA + L++ + NI V +D +VL G V Sbjct: 83 VPGRTTMTILGADGTLLSNVEVQVTPDIAEFKERLKQILPGENIEVRTANDGIVLSGTVS 142 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + RA++L+ + ++V NL+N+ G QV LKV AE++R + K Sbjct: 143 SSAKLDRALDLARRYAG------------ERVSNLMNVGGTQQVMLKVRFAEMQRSVSKN 190 Query: 213 IGFQHSITGSSSGPSKSFAADFG-GKFV------------------SEGGDFSVKGVLDR 253 + ++ G+ G + G G F S G + + Sbjct: 191 LASSLAMRGTVGGGNAQTGVITGTGNFTATDAVGNAFDKGTMPISASTQGALGLGFTVGN 250 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 F +L ALE +RTLAEP LTA+SGQ A F +GG++ V ++ +G Sbjct: 251 MEFGVLLEALESKGMVRTLAEPNLTALSGQQAKFLAGGEYPIPVV--DDDGITIEYKPFG 308 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIV 369 V + F P V+ I L I VS V N + +++ R+ TTVE+ G + Sbjct: 309 VEMSFIPRVVDGDLINLEIAAAVSAIDTSVTMTNNGTTVNAFKRRETSTTVEMRDGESFA 368 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 +AGLL+DD L IP L +P+LG+LFR++ F R+++E+ I TP LV P L+ Sbjct: 369 IAGLLQDDFNDLNTQIPWLGDVPVLGSLFRSTAFERKQSELVIIITPHLVTPTHGEALAL 428 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 P D + +++ F + A EV Q++ G+ G++ + Sbjct: 429 PTDRIRLPSESELFLRGKTEG----GAAGEVARQDFSGSYGYVME 469 >gi|159043678|ref|YP_001532472.1| type II and III secretion system protein [Dinoroseobacter shibae DFL 12] gi|157911438|gb|ABV92871.1| type II and III secretion system protein [Dinoroseobacter shibae DFL 12] Length = 474 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 134/469 (28%), Positives = 230/469 (49%), Gaps = 41/469 (8%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89 A A V+ + + + + + +N+ ++++ + ++ V++P AD+ S R++Y+ Sbjct: 23 APAMAQVLRVQEGQ--ADSTLQVPMNRAVVVESDIPFAELSVANPGIADIATLSDRSIYV 80 Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149 GK+ G+ + L+G DG+ + N+D+ + DIA + L + + NI V +D VVL G Sbjct: 81 LGKSQGRTTMTLLGADGRLITNVDVQVTPDIAEFKERLEQILPGENIEVRTANDGVVLSG 140 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 ++ RA++L++ + + +V NL++I G QV LKV AE++R + Sbjct: 141 TASSVTAMDRALDLAQRY------------APDRVSNLMSIGGSQQVMLKVRFAEMQRSV 188 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------------------FSVKGVL 251 KQ+ +T SG +F+ G +++GG + + Sbjct: 189 SKQL--SGGLTAIYSGTDGAFSVGLGSGGLTDGGSIGGANSTEFTLNPEAAGTIGLGFNI 246 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 S +L ALE +RTLAEP LT +SGQ ASF +GG++ V+ G SV Sbjct: 247 GNVSLGILLEALESKGVVRTLAEPNLTTLSGQEASFLAGGEYPIP-VADGDGGISVEYKP 305 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGT 367 +GV L F PTVL I L + VS ++ + + R+ TTV+L G + Sbjct: 306 FGVELDFIPTVLDDDVINLELGAAVSALDSSASIITDSLTVQGFSRRETLTTVQLRDGDS 365 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +AGLL+DD + +P L IP+LGALFR++ + R ++E+ I T LV P L Sbjct: 366 FAIAGLLEDDFRDFAGQVPWLGDIPVLGALFRSADYARSQSELVIIVTAHLVSPTRGEAL 425 Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPK--EASEVEGQNYKGAIGFIYK 474 P D + + + F + + P+ A EV Q++ G+ G++ + Sbjct: 426 VLPTDRVRIPSEREFFLNGNLVREDTPRRGAAGEVAQQDFSGSYGYVLE 474 >gi|170740621|ref|YP_001769276.1| type II and III secretion system protein [Methylobacterium sp. 4-46] gi|168194895|gb|ACA16842.1| type II and III secretion system protein [Methylobacterium sp. 4-46] Length = 501 Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 154/454 (33%), Positives = 255/454 (56%), Gaps = 20/454 (4%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 A V++I E ++I + + +++ +P D ++V V++P A+ VV S R +++ G Sbjct: 52 AAPVLSIGPQEAEIARRIDLTQGRSLVIDLPRDAKEVFVANPKVANAVVRSTRKVFIIGV 111 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G ++ ++ +G+Q+ +LD+ + RD+ L TL + + V D+++L G V Sbjct: 112 ENGATSIFVMDAEGRQIASLDVTVGRDLNILRQTLATSLPSARFEVRPAGDSILLSGTVN 171 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + ++Q+A++++ F+ +G + V+N + I G+DQV L+VT+ EV R +LKQ Sbjct: 172 SATEAQQALDIANAFVGIAGGTVTRGA----VINNITIRGKDQVMLRVTVVEVSRTVLKQ 227 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--SFETVLHALERATAIR 270 G S++GS SG + + A F G+ + S + L A E+A R Sbjct: 228 FGV--SLSGSWSGLNLTNATQFALNGDRGLGNLIEGTINGGAGASLKATLKAFEQAGVSR 285 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----VTTHDYGVVLHFTPTVLSPG 326 LAEPTLTAISG+SA FT+GG+ + S T A + +T YGVVL+FTP VLS Sbjct: 286 ILAEPTLTAISGESAKFTAGGEIAVPSGLSCTTANNCIPGITFKQYGVVLNFTPVVLSEN 345 Query: 327 RIGLRIQTEVSEPV--------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 RI +R+ T+V+E IG + +P + +RK++TT+EL SG TI+ AGL++ Sbjct: 346 RISIRVGTDVTEIDQQNAYSYNIGTTSTSVPGFTIRKSETTIELASGATIMTAGLIQQKN 405 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 + G+P L +P+LGALFR+ + R+ETE+ I TP++ K + ++ RPDD + Sbjct: 406 KAAVMGLPALMNLPVLGALFRSRDYQRDETELMIMVTPYIAKAMDPGEVKRPDDGFVDAT 465 Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 D +A R N++YG A+ + + Y+G GFI Sbjct: 466 DGQAILLGRFNRLYGVVGAAPLAPKAYRGKFGFI 499 >gi|89068017|ref|ZP_01155434.1| Outer membrane general secretion pathway protein, Secretin [Oceanicola granulosus HTCC2516] gi|89046256|gb|EAR52313.1| Outer membrane general secretion pathway protein, Secretin [Oceanicola granulosus HTCC2516] Length = 482 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 130/459 (28%), Positives = 216/459 (47%), Gaps = 43/459 (9%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 + + + +N+ ++++ +V +++P AD+ S RT+Y+ GK G+ + L+G Sbjct: 36 APSRALQVPMNRAVVVESDTPFTEVSIANPGIADISTLSDRTLYVLGKEPGRTTLTLLGA 95 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 DG+ + N+++ + DI + L + + +I V ++ +VL G V +I RA+EL+ Sbjct: 96 DGRLITNVEVQVTPDIDEFKERLAQILPGEHIEVRTAANGIVLSGTVSSIARLDRALELA 155 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + + + +V NL+ + G QV LKV AE++R + K + + G++ Sbjct: 156 QRY------------APDRVSNLMTVGGVQQVMLKVRFAEMQRSVSKSLSSSLTARGTAL 203 Query: 225 GPSKSFAADFGG----------------KFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 G + A G + G + +L ALE Sbjct: 204 GENLGLTAGTGTLTGNGAIGSALNGNVPAANANNGALLLGFNAGGVEIGMLLEALESRGV 263 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 +RTLAEP LTA+SGQ A F +GG++ VS G+ S+ +GV L+F P V+ I Sbjct: 264 VRTLAEPNLTALSGQEARFLAGGEYPVP-VSQDGGSISIEYKPFGVELNFIPRVVDGDLI 322 Query: 329 GLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L +Q VS + ++R R+ TTVE+ G + +AGLL DD L Sbjct: 323 NLELQASVSSIDPTNGFVQGGFSIDAFRRRETSTTVEMRDGESFAIAGLLSDDFIDLNSQ 382 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +P + IP+LGALFR++ + R +TE+ I TP LV P L+ P D + F Sbjct: 383 LPFVGDIPVLGALFRSAEYERNQTELVIIVTPHLVTPTRGEALALPTDRVRPPSERDLFL 442 Query: 445 FNRVNKIYGPK----------EASEVEGQNYKGAIGFIY 473 F RV G A+EV Q++ G+ G++ Sbjct: 443 FGRVTAPDGSPIPSSSAPQSGAAAEVARQDFSGSYGYVL 481 >gi|99082186|ref|YP_614340.1| type II and III secretion system protein [Ruegeria sp. TM1040] gi|99038466|gb|ABF65078.1| Hypothetical 443 kDa protein y4xJ [Ruegeria sp. TM1040] Length = 497 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 125/462 (27%), Positives = 223/462 (48%), Gaps = 32/462 (6%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89 + A IS ++ G + + +N+ ++++ V ++ +++P+ AD+ S RT+Y+ Sbjct: 49 SPSPAVAQGISVLKKGTNAVLDVPMNRAVVVEADVPFAELSIANPSIADISSLSDRTIYV 108 Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149 GK+ G + L+ G + N+D+ + D++ + L++ + + I V +D +VL G Sbjct: 109 LGKSPGLTTLTLLDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSG 168 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 V + Q QRA++L+E + + +V NL+ + G QV LKV AE+ R + Sbjct: 169 TVSSAQRLQRALDLAERY------------APDRVSNLMTVGGIQQVMLKVRFAEMERSV 216 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------------GDFSVKGVLDRFS 255 K +G I S + + GG G G + Sbjct: 217 SKSLGGSMLIRSSDGAIATGSFQNRGGNGNIFGDSVTSPVQLQSETLGAALFGFDIGAVQ 276 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F +L ALE+ +RTLAEP L+A+SGQ A+F +GG++ V+ G +V +G+ Sbjct: 277 FNVLLEALEQKGLVRTLAEPNLSALSGQEANFLAGGEYPVP-VAQEDGVITVEFKPFGIE 335 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTVELPSGGTIVLA 371 L+F P V+ I L ++ VS +A + ++ R+ TTVEL G + +A Sbjct: 336 LNFIPRVVDGDLINLELKAAVSAIDTTNSATFDGFSINAFSRRETATTVELRDGESFAIA 395 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL++D+ + +P L +P+LGALFR++ + R ++E+ I + LV P L+ P Sbjct: 396 GLIEDEFRDGAAQVPWLGDVPVLGALFRSADYARNQSELVIIVSAHLVTPTRGEALALPT 455 Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 D + F F + + A EV Q++ G+ G++ Sbjct: 456 DRIRPPSEKNLFLFGQTERAQA-GAAGEVANQDFNGSYGYLL 496 >gi|254440636|ref|ZP_05054129.1| Putative phospholipid-binding domain family [Octadecabacter antarcticus 307] gi|198250714|gb|EDY75029.1| Putative phospholipid-binding domain family [Octadecabacter antarcticus 307] Length = 474 Score = 362 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 136/481 (28%), Positives = 227/481 (47%), Gaps = 35/481 (7%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 FL ++ +A + + + +++ +N+ ++++ V ++ +++P Sbjct: 6 FLKATLTGLAIMFTNLPVQLQAETLRVMRGAPSSALNVPMNRAVVVESDVPFTELSIANP 65 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + AD+ S RT+Y+ GK G+ + L+G DG+ + N+++ + DIA + L + + Sbjct: 66 SIADISSLSDRTIYVLGKEPGRTTLTLLGGDGRLITNVEVHVTPDIAEFKERLEQILPGE 125 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 NI V +D +VL G V +I RA+EL+ + + +V NL+++ G Sbjct: 126 NIEVRTANDGIVLSGTVSSIARLDRALELANRY------------APDRVSNLMSVGGTQ 173 Query: 195 QVTLKVTIAEVRR--------------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 QV L+V AE++R L TG++ G + + G + Sbjct: 174 QVMLRVRFAEMQRSVSKSLSSSLALGGSTLGGDLGLALGTGATVGNTGRLSTLSGATPAN 233 Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G F +L ALE +RTLAEP LTA+SGQ ASF +GG++ + Sbjct: 234 NDNAGAFLFGFNAGGVEVGILLEALENRGVVRTLAEPNLTALSGQEASFLAGGEYPVP-I 292 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVR 354 S A +V +G+ L FTP V+ I L + VS N + ++R R Sbjct: 293 SQDGSAITVEYKPFGISLSFTPRVIDGDIINLELHASVSSLDPTNGFSQNGFSIDAFRTR 352 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + TTVE+ G + +AGLL DD L +P IP+LGALFR++ ++R++TE+ I Sbjct: 353 ETSTTVEMRDGESFAIAGLLSDDFVDLSGQVPWAGDIPVLGALFRSAEYSRQQTELVIIV 412 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK--EASEVEGQNYKGAIGFI 472 TP LV P L+ P D + F F RV P+ A EV Q++ G+ G++ Sbjct: 413 TPHLVTPTRGDALALPTDRVRPPTERDLFLFGRVTAEDAPQSGGAGEVARQDFSGSYGYV 472 Query: 473 Y 473 Sbjct: 473 L 473 >gi|149915642|ref|ZP_01904168.1| bacterial type II/III secretion system protein [Roseobacter sp. AzwK-3b] gi|149810534|gb|EDM70377.1| bacterial type II/III secretion system protein [Roseobacter sp. AzwK-3b] Length = 467 Score = 362 bits (928), Expect = 9e-98, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 234/472 (49%), Gaps = 28/472 (5%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 ++ +A + N+ V G + +++ +N+ ++++ V ++ +++P+ A Sbjct: 9 AALLGLAVVFSGFVTELQAENLQVVRNGAARDLNVTMNRAVVVESDVPFAELSIANPSIA 68 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 D S RT+Y+ GK G+ + L+ G+ + N++I + D++ + L++ + + I Sbjct: 69 DFSTLSDRTIYVLGKAPGRTTLTLLDDSGRLITNVEIHVSTDVSEFKERLQQILPNERIE 128 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V +D +VL G V + +RA+ L++ + + +V NL+ +AG QV Sbjct: 129 VRTANDGIVLSGSVSSTARMERALSLAQRY------------APDRVSNLMVVAGNQQVM 176 Query: 198 LKVTIAEVRRDILKQIGFQ-----HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 LKV AE++R + KQ+ ++G+ + + S G V + + Sbjct: 177 LKVRFAEMQRSVSKQLSTSLAVDALGVSGNGAALAGSNLPSAGANRVGITANNNAGVAFF 236 Query: 253 RFSFET-----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 F + +L ALE +RTLAEP LTA+SGQ A F +GG++ V+ TS+ Sbjct: 237 GFDIGSVEIGILLEALETKGVVRTLAEPNLTALSGQEAKFLAGGEYPVP-VAQDNNTTSI 295 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELP 363 +GV L+F P V+ I L + VS +P G+N G ++ ++R R TTV+L Sbjct: 296 EFKPFGVELNFIPRVVDGDIINLEMAAAVSSIDPTNGINTGAFNVDAFRRRDTSTTVQLR 355 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G + +AGLL+DD + +P L +PILGALFR++ + R +TE+ I + LV P Sbjct: 356 DGESFAIAGLLQDDFRDTNAQVPWLGDVPILGALFRSADYARAQTELVIIVSAHLVTPTR 415 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE-ASEVEGQNYKGAIGFIYK 474 L+ P D + + F RV P A EV Q++ G+ G++ + Sbjct: 416 GEALALPTDRVRLPSEMDLFLNGRVLNSNIPSGTAGEVARQDFTGSYGYVME 467 >gi|149200847|ref|ZP_01877822.1| bacterial type II/III secretion system protein [Roseovarius sp. TM1035] gi|149145180|gb|EDM33206.1| bacterial type II/III secretion system protein [Roseovarius sp. TM1035] Length = 472 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 131/464 (28%), Positives = 218/464 (46%), Gaps = 33/464 (7%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89 A +I V G +S+ +N+ ++++ ++ +++P AD S RT+Y+ Sbjct: 21 APQPAQAESIRVVRNGTSSALSVAMNRAVVVESDSPFAELSIANPAIADFSTLSERTIYV 80 Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149 GK G+ + L GK + N+D+ + DI + L++ + I V +D +V+ G Sbjct: 81 LGKTPGRTTLSLFDGLGKLITNIDVHVSTDIEEFKERLKQILPGEPIEVRSANDGIVISG 140 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 V + QRA++L+E + + ++V NL++++G+ QV LKV AE++R + Sbjct: 141 TVSSTSRMQRALDLAERY------------APERVSNLMSVSGKQQVMLKVRFAEMQRSV 188 Query: 210 LKQIGFQHSITGSSSG-----PSKSFAADFGGKFVSEGG----------DFSVKGVLDRF 254 K + SI + + GG + G F+ + Sbjct: 189 SKALSSSLSIDARGANSVGVIGGTNTTNTQGGVLGTLAGAIPGTNENNAAFAFGFDVGSV 248 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +L ALE +RTLAEP LTA+SGQ A F +GG+ V+ TS+ +GV Sbjct: 249 EVGILLEALETKGVVRTLAEPNLTALSGQEAKFLAGGEFPVP-VAQDNDTTSIEFKPFGV 307 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVL 370 L+F P V+ G I L + VS N +P++R R TTV L G + + Sbjct: 308 ELNFVPRVVDDGIINLEMAAAVSSIDTANSLVSNGFAIPAFRRRDTSTTVALRDGESFAI 367 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL+DD + +P L +P+LGALFR++ + R +TE+ I + LV P L+ P Sbjct: 368 AGLLQDDFRDNAGQVPWLGDVPVLGALFRSADYQRSQTELVIIVSAHLVSPSRGEALALP 427 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEA-SEVEGQNYKGAIGFIY 473 D + + F RV + K EV Q++ G+ G++ Sbjct: 428 TDRVKLPSEKDLFLNGRVARGVSDKGPVGEVAKQDFTGSYGYVM 471 >gi|254487886|ref|ZP_05101091.1| bacterial type II/III secretion system protein [Roseobacter sp. GAI101] gi|214044755|gb|EEB85393.1| bacterial type II/III secretion system protein [Roseobacter sp. GAI101] Length = 486 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 134/489 (27%), Positives = 229/489 (46%), Gaps = 39/489 (7%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 F T L +A P A + + V G + + + +N+ ++++ + Sbjct: 13 FITAALFGLTICAMPLALAAPTAV-QADTLRV--VNRGTNRALEVPMNRAVVVESDIPFA 69 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 ++ +++P AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + DI+ + L Sbjct: 70 ELSIANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAAGQLITNVDVRVASDISEFKERL 129 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 R+ + I V +D +VL G+V + Q QRA++L+E + + ++V NL Sbjct: 130 RQILPGEKIEVRTANDGIVLSGIVSSTQGLQRALDLAERY------------APERVSNL 177 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------------SSSGPSKSFAADFG 235 +++ G QV LKV AE++R + K + ++ G +++ S + A Sbjct: 178 MSVGGIQQVMLKVRFAEMQRSVSKSLSASLALNGLLGSDLAINGGTNTTNGSTAIANSLN 237 Query: 236 GKFV---SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G S G +L ALE+ A+R LAEP L A+SGQ A+F +GG+ Sbjct: 238 GSTPTTNSNAGAVLFGFNAGSTQVGLLLEALEQKGAVRFLAEPNLVALSGQEATFLAGGE 297 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGD 347 + VS S SV +GV + F P V+ I L ++ VS N D Sbjct: 298 YPVP-VSQSGDRISVEYKPFGVEMSFIPRVVDKNLINLELKAAVSAIDPSNSVSLGNGFD 356 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + ++ R+ TTVE+ G + +AGLL DD +P + +P+LGALFR++ + R + Sbjct: 357 ISAFTRRETSTTVEMRDGESFAIAGLLTDDFTDTSRQLPWIGDVPVLGALFRSANYQRSQ 416 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN---KIYGPKEASEVEGQN 464 TE+ I T LV P L+ P D + + F R + K A EV Q+ Sbjct: 417 TELVIIITAHLVTPTRGDALALPTDRIKPPTENELFLSGRTSSGGKAPTRGAAGEVAKQD 476 Query: 465 YKGAIGFIY 473 + G+ G++ Sbjct: 477 FSGSYGYVL 485 >gi|209886530|ref|YP_002290387.1| type II and III secretion system protein [Oligotropha carboxidovorans OM5] gi|209874726|gb|ACI94522.1| type II and III secretion system protein [Oligotropha carboxidovorans OM5] Length = 486 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 165/482 (34%), Positives = 267/482 (55%), Gaps = 28/482 (5%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 +S+F+ S PS A ++A+ + + + + +G++K +++ +P DV+D Sbjct: 13 AAAISVFILGSAPSSALATDYSASSASTSHADSLN---ARALRLGISKSLVVDLPRDVKD 69 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 VLV+DP A+ VV S R Y+ G +VGQ N+I DG+QM D+ + RD+ + + Sbjct: 70 VLVADPKIANAVVRSSRRAYIIGASVGQTNIIFFDADGQQMAAYDVAVTRDLNGIRTAIH 129 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + + S+I+VE + D VVL G ++Q+A EL+ + + + + ++N + Sbjct: 130 QALPQSDIQVEGLGDGVVLSGTAANQAEAQQAYELAARLIGGPSK------AGELIVNNI 183 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGG 243 + G DQV L+VT+AEV+R I+KQ+G S + + F G + V Sbjct: 184 AVRGRDQVMLRVTVAEVQRSIIKQLGVDLSGSFNYGTAVVDFNNTNTFTALGRRLVDNNA 243 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT------ 297 + G S + L A+E A IRTLAEP LTAISG+SA+F +GG+ T Sbjct: 244 VSAAFGNGTVPSVKATLRAMESAGVIRTLAEPNLTAISGESATFIAGGEFPIPTGITCQT 303 Query: 298 ---VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPS 350 S+ S+ +G+ L+FTP VL+ GRI LR+ TEVSE I V+ +PS Sbjct: 304 AAGGSTGPCQPSIAFKKFGISLNFTPVVLTEGRISLRVMTEVSEVSSDNSISVSGLTIPS 363 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R+A+TT+E+PSGG++ +AGL++D +Q G+P L+++P+LG LFR+ F +TE+ Sbjct: 364 IKTRRAETTLEIPSGGSMAMAGLIQDQTKQAINGLPGLAQVPVLGTLFRSRDFINNQTEL 423 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 + TP++V+ VA +DLSRPDD ++ D ++ + +IYG +Y+G G Sbjct: 424 MVLVTPYVVRAVAQKDLSRPDDGFASASDPQSVLLGNITRIYGVPRRGGPVA-SYRGKYG 482 Query: 471 FI 472 FI Sbjct: 483 FI 484 >gi|114705456|ref|ZP_01438364.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506] gi|114540241|gb|EAU43361.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506] Length = 544 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 190/506 (37%), Positives = 279/506 (55%), Gaps = 65/506 (12%) Query: 33 NAAVINISDVEIGKGK-KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A + V+IG G +I +GL+K +L + D D+LV++P+ AD + R +YLFG Sbjct: 40 QTAYAEQNVVQIGAGHTRIELGLDKSKVLVLSADAHDILVANPSIADALTRDRRHIYLFG 99 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 K VGQ N+I+ +Q+ ++DI IERDIA L + +++ DS+++VE+++D VVL G V Sbjct: 100 KQVGQTNLIVFDQANRQIASIDIQIERDIAGLSQAIAKYVPDSDVKVEIMNDNVVLTGRV 159 Query: 152 RTIQDSQRAVELSETFL--SQSGRNQYANSSS---------------------KKVMNLL 188 RT DS+R +++ +L ++ QY S+S +++NLL Sbjct: 160 RTPLDSKRVSQIASAYLTGGEATTGQYIRSASAGGESEGSNGDVAFASETRRESQIINLL 219 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFS 246 I GEDQVTLKVT+AEV+R I+KQ+G + + G + D FG + +F Sbjct: 220 QIEGEDQVTLKVTVAEVQRSIIKQLGLNGATSSVIDGMTFGSLIDNPFGLGKAASNSNFG 279 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ 300 + G + L A+++A +RTLAEP LTAISG+SASF GG+ L T S Sbjct: 280 LAGTIGDTGIRAQLSAMDQAGVMRTLAEPNLTAISGESASFKVGGEFLLPTGQSYDYGEE 339 Query: 301 -----------------------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 T +YG+ L FTP VLSPGRI L+++T VS Sbjct: 340 AKREFKGFDGDGRAIYEEVPATRDVRTVETKTIEYGIGLDFTPVVLSPGRISLKVRTSVS 399 Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 EP R R ADTTVELPSGG++V+AGL++D+++Q+ G P L Sbjct: 400 EPTFETPFGSSGGFDGGVTGIGIRKRLADTTVELPSGGSLVIAGLVRDEVRQVVSGFPGL 459 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 SK+P+LG+LFR+ F R ETE+ + TP+LV+PVA L+RPDD + D + F ++ Sbjct: 460 SKLPVLGSLFRSRDFQRYETELVVIVTPYLVRPVAREALARPDDGLAFASDGASNFLGKI 519 Query: 449 NKIYGPKEASEVEGQNYKGAIGFIYK 474 N++YG E G+ Y G +G+IYK Sbjct: 520 NRVYGHSETKLPPGR-YHGVVGYIYK 544 >gi|83943939|ref|ZP_00956396.1| bacterial type II/III secretion system protein [Sulfitobacter sp. EE-36] gi|83954512|ref|ZP_00963223.1| bacterial type II/III secretion system protein [Sulfitobacter sp. NAS-14.1] gi|83840796|gb|EAP79967.1| bacterial type II/III secretion system protein [Sulfitobacter sp. NAS-14.1] gi|83845186|gb|EAP83066.1| bacterial type II/III secretion system protein [Sulfitobacter sp. EE-36] Length = 479 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 126/488 (25%), Positives = 230/488 (47%), Gaps = 38/488 (7%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 F ++ + L +A A + + V+ G + + + +N+ ++++ + + Sbjct: 6 FIKAALLGLTIGAMPFALTAPIDAQANTLRV--VKKGTNRVLEVPMNRAVVVESDIPFAE 63 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 + +++P AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ + LR Sbjct: 64 LSIANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAAGQLITNVDVRVAADVSEFKERLR 123 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + + I V +D +VL G+V + Q QRA++L+E + + ++V NL+ Sbjct: 124 QILPGEKIEVRTANDGIVLSGIVSSTQRLQRALDLAERY------------APERVSNLM 171 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------------SSSGPSKSFAADFGG 236 ++ G QV +KV AE+ R + K + ++ G +++ + + A GG Sbjct: 172 SVGGIQQVMMKVRFAEMSRSVSKSLSASLALNGLVGNDLAINGGTNTTNTAGAIANSLGG 231 Query: 237 KFV---SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 S G +L ALE+ A+R LAEP L A+SGQ A+F +GG++ Sbjct: 232 TTPASNSNAGAVLFGFNAGSTQVGLLLEALEQKGAVRFLAEPNLVALSGQEATFLAGGEY 291 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDM 348 + SV +GV + F P V+ I L ++ VS N D+ Sbjct: 292 PVPVAQTGD-QISVQYKPFGVEMSFIPRVVDKDLINLELKAAVSAIDASNSVSLGNGFDI 350 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ R+ TTVE+ G + +AGLL DD +P + +P+LGALFR++ + R ++ Sbjct: 351 SAFTRRETSTTVEMRDGESFAIAGLLTDDFTDNSSQLPWIGDVPVLGALFRSANYQRSQS 410 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK---EASEVEGQNY 465 E+ I T LV P L+ P D +++ F R +K A EV Q++ Sbjct: 411 ELVIIITAHLVTPTRGEALALPTDRIKPPTESELFLSGRTSKGSTAPTKGAAGEVAKQDF 470 Query: 466 KGAIGFIY 473 G+ G++ Sbjct: 471 SGSYGYVL 478 >gi|84516633|ref|ZP_01003992.1| Outer membrane general secretion pathway protein, Secretin [Loktanella vestfoldensis SKA53] gi|84509669|gb|EAQ06127.1| Outer membrane general secretion pathway protein, Secretin [Loktanella vestfoldensis SKA53] Length = 476 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 136/483 (28%), Positives = 226/483 (46%), Gaps = 38/483 (7%) Query: 15 FLFSSNPSVA-KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 FL ++ VA + A A + + + + +N+ ++++ V ++ +++ Sbjct: 6 FLKAALAGVALSMTAAAPAMAQDSTLRVLRGAASNALDVPMNRAVVVESDVPFTELSIAN 65 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 P AD+ S RT+Y+ GK G+ + L+ DG+ + N+++ + D+A + L + + Sbjct: 66 PGIADISSLSDRTIYVLGKEPGRTTLTLLSADGRLITNVEVHVSPDMAEFKERLTQILPG 125 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 NI V +D +VL G V + RA++L++ + + +V NL+++ G Sbjct: 126 ENIEVRTANDGIVLSGTVSSTARLDRALDLAQRY------------APDRVSNLMSVGGT 173 Query: 194 DQVTLKVTIAEVRR-----------------DILKQIGFQHSITGSSSGPSKSFAADFGG 236 QV LKV AE++R + I + T +G + + + Sbjct: 174 QQVMLKVRFAEMQRSVSKALSSSLSLNGTSLQNGRNIRGGSNTTVGQAGITNTLN-NIVP 232 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G F +L ALE +R+LAEP LTA+SGQ A+F +GG++ Sbjct: 233 TANDNNGAFLFGFGAGGVEVGVLLEALESRGVVRSLAEPNLTALSGQQATFLAGGEYPVP 292 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYR 352 VSS GA SV +GV L+FTP V+ I L + VS N ++ ++ Sbjct: 293 -VSSEDGAISVEYKPFGVELNFTPRVVDGDVINLELLAAVSAIDPSNSFSANGFEISAFS 351 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ TTVE+ G + +AGLL DD L +P + +PILGALFR++ + R +TE+ I Sbjct: 352 RRETSTTVEMRDGESFAIAGLLSDDFTDLSGQVPWIGDVPILGALFRSAEYARRQTELVI 411 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK--EASEVEGQNYKGAIG 470 TP LV P L+ P D + F F RV P A EV Q++ G+ G Sbjct: 412 IVTPHLVSPTRGTALALPTDRVRPPSEQDLFLFGRVTAASAPTRGGAGEVARQDFMGSYG 471 Query: 471 FIY 473 ++ Sbjct: 472 YVM 474 >gi|220922779|ref|YP_002498081.1| type II and III secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947386|gb|ACL57778.1| type II and III secretion system protein [Methylobacterium nodulans ORS 2060] Length = 494 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 154/494 (31%), Positives = 243/494 (49%), Gaps = 25/494 (5%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEAN-----AAVINISDVEIGKGKKISIGLN 55 MR++ + + PS P + A V+++ E ++I + Sbjct: 2 MRFVPFRALRALLAAGLLATPSGLASPAAAQQRVPAMPAPVLSVGPQEADISRRIDLTQG 61 Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 + +++ +P D ++V V++P A+ VV S R +++ G G ++ ++ +G+Q+ LD+ Sbjct: 62 RSLVVDLPRDAKEVFVANPKVANAVVRSTRKVFIIGVENGATSIFVMDAEGRQIAALDVT 121 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + RD+ L TL I V D+++L G V + ++Q+A++++ F+ G Sbjct: 122 VGRDLNVLRQTLASSIPKGRFEVRPAGDSILLSGSVNSAAEAQQAIDVANAFVGIGGGGV 181 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 + +N + I G+DQV L+VT+ EV R +LKQ G S S+ + Sbjct: 182 PGRGAV---INNITIRGKDQVMLRVTVVEVSRSVLKQFGVNLSGNWSNLNFANVAPLALN 238 Query: 236 GKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G G S S L A E+A R LAEPTLTAISG+SA FT+GGQ Sbjct: 239 GGSFPIGNAISGSINFGGGASLTATLKAFEQAGVSRVLAEPTLTAISGESAKFTAGGQLP 298 Query: 295 YK--------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--- 343 + SVT YGV L FTP VLS RI +R+ T+V+E Sbjct: 299 VPGNLACSAPSNGVQLCTPSVTFKPYGVSLTFTPVVLSENRISIRVGTDVTEIDPQNSMN 358 Query: 344 -----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 +P + VR ++TTVEL SG T++ AGL++ + G+P L +PILGALF Sbjct: 359 INFSGTTTAIPGFTVRTSETTVELASGATMMTAGLIQQRNRAAITGLPALMNLPILGALF 418 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 R+ + R+ETE+ I TP++ K + ++ RPDD + D +A R N++YG AS Sbjct: 419 RSRDYQRDETELMIMVTPYIAKAMEPAEIKRPDDGFVDATDGQAVLLGRFNRLYGVVGAS 478 Query: 459 EVEGQNYKGAIGFI 472 + + Y G GFI Sbjct: 479 PLAPKAYHGRFGFI 492 >gi|240139026|ref|YP_002963501.1| putative pilus assembly protein; putative precursor [Methylobacterium extorquens AM1] gi|240008998|gb|ACS40224.1| putative pilus assembly protein; putative precursor [Methylobacterium extorquens AM1] Length = 502 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 156/499 (31%), Positives = 251/499 (50%), Gaps = 35/499 (7%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANA------AVINISDVEIGKGKKISIGLNKVII 59 F + + + + + A L A A V+ I E +++ + + +I Sbjct: 5 SRFRGLALLLISGAGLASAMLSGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLI 64 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 + +P D ++V V++P A+ VV S R ++L G + G ++ ++ +G+Q+ LD+ I RD Sbjct: 65 VDLPRDAKEVFVANPAVANAVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARD 124 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 I L +L++ + V+ V D++VL G V + ++Q+A++++ F+ + A Sbjct: 125 INVLRQSLQQSLPGGRFDVKAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATR 184 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----QHSITGSSSGPSKSFAADF- 234 + V+N L I +DQV ++VT+ EV R +LKQ G S G + F Sbjct: 185 GA--VINNLTIRNKDQVMIRVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFP 242 Query: 235 -GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G + + FSF+ L A E+A R LAEPTLTAISG+SA FT+GG+ Sbjct: 243 LTGSRSPDANALTASVQTGGFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEI 302 Query: 294 LYKTVSSSTGATSV------------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 S+ S+ T YGV L FTP V++ RI +RI T+V + Sbjct: 303 PVPLSCSAASTVSIGTSVSQGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDP 362 Query: 342 GVN--------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + +P R ++TTVEL SG T++ AGL++ + G+P L +PI Sbjct: 363 QNSFTYYLNDRPTPVPGTTKRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPI 422 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LGALFR+ + R+ETE+ I TP++ +P+ R + RPDD + D +A R+NKIYG Sbjct: 423 LGALFRSRDYQRDETELMIMVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYG 482 Query: 454 PKEASEVEGQNYKGAIGFI 472 + G Y+G +GFI Sbjct: 483 TVGGGTL-GPAYRGRVGFI 500 >gi|328545279|ref|YP_004305388.1| Pilus assembly protein [polymorphum gilvum SL003B-26A1] gi|326415021|gb|ADZ72084.1| Pilus assembly protein [Polymorphum gilvum SL003B-26A1] Length = 470 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 166/475 (34%), Positives = 272/475 (57%), Gaps = 22/475 (4%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAA-----VINISDVEIGKGKKISIGLNKVIILQVPVDV 66 + L ++ + + + A A ++++ E + + +GL + +++ V DV Sbjct: 6 FATGLLAALAVLVTVSAMPAARADDGFPKTVHVAAGERATARLLRVGLGRSVVVNVAEDV 65 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 DVLVS+P AD VV S +++ G GQAN++L G +G+++ + ++ +E D + L Sbjct: 66 ADVLVSNPEIADAVVRSKNRVFVLGNKAGQANLVLFGRNGRELASFNLRVEPDTSDLSAL 125 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L+R + +S+I E ++ VVL G + D+Q A +L+ F + + + V+N Sbjct: 126 LKRVLPNSDIHAESINGNVVLSGTAVSAADAQSAADLATRFGG-------SGAGALPVLN 178 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGG 243 ++++AG+DQ+ LKVT+AEV R ++KQ+G S + G+ G S + ++ Sbjct: 179 MISVAGKDQIQLKVTVAEVDRSVVKQLGVNLSGSIGIGNYRGTFNSASDFPVNPGITSQA 238 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + + + + AL+R IRTLAEPTLTAISG++ASF +GG+ VS Sbjct: 239 TGGIGFLAGGTNVNAEIQALQRDGVIRTLAEPTLTAISGENASFLAGGEFPVP-VSQDND 297 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359 V +GV L FTP VLS GRI +R++TEVSE + + + +VR+A++T Sbjct: 298 TIGVEFKKFGVGLDFTPVVLSGGRISMRVKTEVSELTNDGAVTTGGIVISALKVRRAEST 357 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VELPSGGT+V+AGLLK+ +Q GIP L ++P+LGALF++ F R++TE+ + TP++V Sbjct: 358 VELPSGGTLVMAGLLKETYKQAVNGIPGLMQLPVLGALFKSRDFLRQQTELVVFVTPYVV 417 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 PVA L+RPD ++ DA+ F NR+NK++G A Y G +G+IY+ Sbjct: 418 TPVAANALTRPDQNFLPPSDAETVFLNRINKLFGVSGAKVPG--TYHGQVGYIYE 470 >gi|259417373|ref|ZP_05741292.1| type II and III secretion system protein [Silicibacter sp. TrichCH4B] gi|259346279|gb|EEW58093.1| type II and III secretion system protein [Silicibacter sp. TrichCH4B] Length = 442 Score = 358 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 126/451 (27%), Positives = 221/451 (49%), Gaps = 30/451 (6%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 IS ++ G + + +N+ ++++ V ++ +++P AD+ S RT+Y+ GK+ G Sbjct: 5 ISVLKKGTNAVLDVPMNRAVVVEADVPFAELSIANPGIADISSLSDRTIYVLGKSPGMTT 64 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 + L+ G + N+D+ + D++ + L++ + + I V +D +VL G V + Q Q Sbjct: 65 LTLLDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSGTVSSAQRLQ 124 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 RA++L+E + + +V NL+ + G QV LKV AE+ R + K +G Sbjct: 125 RALDLAERY------------APDRVSNLMTVGGIQQVMLKVRFAEMERSVSKSLGGSML 172 Query: 219 ITGSSSGPSKS-----------FAADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALERA 266 I S S F D ++ ++ G + F +L ALE+ Sbjct: 173 IGSSDGNVSTGTFLNRPEGGGVFGTDSPVNLKADTLGAAIFGFDIGAVQFNVLLEALEQK 232 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +RTLAEP L+A+SGQ ASF +GG++ V+ G +V +G+ L+F P V+ Sbjct: 233 GLVRTLAEPNLSALSGQEASFLAGGEYPVP-VAQEEGVVTVEFKPFGIELNFIPRVVDGD 291 Query: 327 RIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 I L ++ VS A + ++ R+ TTVEL G + +AGL++D+ + Sbjct: 292 LINLELKAAVSAIDTTNAATFDGFSINAFSRRETATTVELRDGESFAIAGLIEDEFRDGA 351 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +P L +P+LGALFR++ + R ++E+ I + LV P L+ P D + Sbjct: 352 AQVPWLGDVPVLGALFRSADYERNQSELVIIVSAHLVTPTRGEALALPTDRIRPPSEKNL 411 Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F F R + A EV Q++ G+ G++ Sbjct: 412 FLFGRTERAQ-SGAAGEVANQDFNGSYGYLL 441 >gi|254561621|ref|YP_003068716.1| pilus assembly protein [Methylobacterium extorquens DM4] gi|254268899|emb|CAX24860.1| putative pilus assembly protein; putative precursor [Methylobacterium extorquens DM4] Length = 502 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 153/480 (31%), Positives = 244/480 (50%), Gaps = 29/480 (6%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 P A + V+ I E +++ + + +I+ +P D ++V V++P A+ Sbjct: 24 MLPGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L +L++ + V Sbjct: 84 AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDV 143 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + V D++VL G V + ++Q+A++++ F+ + A + V+N L I +DQV + Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201 Query: 199 KVTIAEVRRDILKQIGF----QHSITGSSSGPSKSFAADF--GGKFVSEGGDFSVKGVLD 252 +VT+ EV R +LKQ G S G + F G + + Sbjct: 202 RVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFPLTGSRSPDANALTASVQTG 261 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307 FSF+ L A E+A R LAEPTLTAISG+SA FT+GG+ S+ S+ Sbjct: 262 GFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVS 321 Query: 308 -------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYR 352 T YGV L FTP V++ RI +RI T+V + + +P Sbjct: 322 QGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTT 381 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ I Sbjct: 382 KRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMI 441 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 TP++ +P+ R + RPDD + D +A R+NKIYG + G Y+G +GFI Sbjct: 442 MVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500 >gi|163745846|ref|ZP_02153205.1| bacterial type II/III secretion system protein [Oceanibulbus indolifex HEL-45] gi|161380591|gb|EDQ05001.1| bacterial type II/III secretion system protein [Oceanibulbus indolifex HEL-45] Length = 478 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 128/490 (26%), Positives = 222/490 (45%), Gaps = 39/490 (7%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 R + + P LP A+ + V+ G + + +N+ ++++ + Sbjct: 5 RFLKAALLGLTLGAMPLALTLPSSAGAD----TLRVVKRGTNSSLDVPMNRAVVVESDIP 60 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 ++ +++P AD+ S RT+Y+ GK+ G + L+ G+ + N+D+ + D++ + Sbjct: 61 FAELSIANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAGGQLITNVDVRVAADVSEFKE 120 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 LR+ + I V +D +VL G+V + Q QRA++L+E + + ++V Sbjct: 121 RLRQILPGEKIEVRTANDGIVLSGIVSSTQRLQRALDLAERY------------APERVS 168 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------GSSSGPSKSFAADF 234 NL+++ G QV +KV AE++R++ K +G +I S+ S A+ Sbjct: 169 NLMSVGGIQQVMMKVRFAEMQRNVSKSLGSSLAINGAIGGTGINGGTGSTNSSGGVASSL 228 Query: 235 GGKFVS---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 GG S G +L ALE +R LAEP L A+SGQ A F +GG Sbjct: 229 GGTIPSSNQNAGAVLFGFNAGSTQVGILLEALEEKGVVRFLAEPNLVALSGQEAKFLAGG 288 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAG 346 ++ + +V +GV L F P V+ I L + VS N Sbjct: 289 EYPVPVAQTGD-TIAVEFKPFGVELAFIPRVVDKDIINLEMNAAVSAIDGSNSIALGNGI 347 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 ++ ++ R+ TTVE+ G + +AGLL DD +P + +P+LGALFR++ + R Sbjct: 348 EISAFTRRETSTTVEMRDGESFAIAGLLTDDFTDSTRQLPWIGDVPVLGALFRSADYQRS 407 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV---NKIYGPKEASEVEGQ 463 +TE+ I T LV P L P D + F R + A EV Q Sbjct: 408 QTELVIIVTAHLVTPTRSEALVLPTDRIKPPSEKDLFLHGRTADGTRTPTRGAAGEVAKQ 467 Query: 464 NYKGAIGFIY 473 +++G+ G++ Sbjct: 468 DFRGSYGYVL 477 >gi|304392384|ref|ZP_07374325.1| type II and III secretion system protein [Ahrensia sp. R2A130] gi|303295488|gb|EFL89847.1| type II and III secretion system protein [Ahrensia sp. R2A130] Length = 544 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 187/499 (37%), Positives = 282/499 (56%), Gaps = 30/499 (6%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVIN-----------ISDVEIGKGKKISIG 53 R F S P + + + A A + I+ K + +G Sbjct: 47 VRGFMAWSLATALSFAPVLHPIHEMGVAKAQTVAGELRADKNHIVITARNARVPKLVRLG 106 Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 L+K +++ +P DVLV++P AD V+ + + +YLFGK VGQ NV + + G Q+ L+ Sbjct: 107 LDKSLVVDLPSVANDVLVANPGVADAVMRTSQRLYLFGKQVGQTNVFVFDNGGNQIAALE 166 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 ILIERDI+ LE TL R I +S+I+ EM++D +VL G V T DS +A L++ F+ + Sbjct: 167 ILIERDISGLEETLSRLIPNSDIQAEMINDNIVLTGRVSTPSDSTKAQSLAQIFVRGGEQ 226 Query: 174 --------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 + + ++ + +++NLL I GEDQV LKV+I E++R ++KQ+G S+T ++ G Sbjct: 227 TTNPAQQSSIFGDAPTSEIVNLLKIDGEDQVMLKVSIVEIQRSVVKQLGITTSLTNAAEG 286 Query: 226 PSK--SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + A G S V + + + L L+ IR LAEPTLTAISG+ Sbjct: 287 GFGFSTIAGGSVRNIAGAGLRGSANIVSGQNTLDAQLRVLDHTGMIRMLAEPTLTAISGE 346 Query: 284 SASFTSGGQH-LYKTVSSSTGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 +A F +GG + + + TS+ + YGV L F PTVL+ GRI L+++TEV EP Sbjct: 347 AAEFRAGGTYQAPQQIERDENGTSIEYEERQYGVSLQFIPTVLTEGRISLKLKTEVKEPS 406 Query: 341 IGVNAG-----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + + G + R R A TTVELPSGG++ +AGL++DD++Q G P LSK+PI G Sbjct: 407 LHGSTGRSSDAGLFGTRERVASTTVELPSGGSMAIAGLIQDDLRQNISGFPGLSKLPIFG 466 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 ALFR+ F+R ETE+ I TP+LV+PVA L+ PD+ + + F RVN++YG K Sbjct: 467 ALFRSREFHRSETELVIIVTPYLVRPVARAKLANPDEGFQPASEPAGIFMGRVNRVYGTK 526 Query: 456 EASEVEGQNYKGAIGFIYK 474 + + +G+ Y G+IGFI K Sbjct: 527 QGNLPKGR-YTGSIGFILK 544 >gi|126737254|ref|ZP_01752989.1| bacterial type II/III secretion system protein [Roseobacter sp. SK209-2-6] gi|126721839|gb|EBA18542.1| bacterial type II/III secretion system protein [Roseobacter sp. SK209-2-6] Length = 446 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 126/461 (27%), Positives = 218/461 (47%), Gaps = 29/461 (6%) Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84 LP + A A + + V+ G + + +N+ I+++ ++ +++P AD+ S Sbjct: 2 ALPVAEPAQANGLRV--VKQGTSITLDVPMNRAIVVESDAPFAELSIANPNIADISSLSD 59 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 RT+Y+ GK+ G + L+ GK + N+++ + D++ + LR+ + I V +D Sbjct: 60 RTIYVLGKSPGLTTLTLLDGAGKLITNVNVRVAADVSEFKERLRQILPGEKIEVRTANDG 119 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 +VL G V + QRA++L+E + + ++V NL+++ G QV LKV AE Sbjct: 120 IVLSGTVSSSARLQRALDLAERY------------APERVSNLMSVGGVQQVMLKVRFAE 167 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSF 256 + R + K + + S ++ G + G ++ F Sbjct: 168 MERSVSKTLSSSLAFGNSGDVIGETGTWLDGNNGLGNPVQVTQGTEGAVAISFGAGSFRV 227 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 +L ALE+ +RTLAEP L+A+SGQ ASF +GG++ V + +G+ L Sbjct: 228 GVLLEALEQKGIVRTLAEPNLSALSGQEASFLAGGEYPIPVV--DADGIGIEYKPFGIEL 285 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAG 372 F P V+ I L ++ VS N + + R TTVEL G + +AG Sbjct: 286 DFIPRVVDQDVINLELEAVVSAIDPTTTVVQNGLTINGFTRRATSTTVELRDGESFAIAG 345 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L++D+ +P + IPI+GALFR++ + RE+TE+ I + LV P L+ P D Sbjct: 346 LVQDEFTDSNGQVPWVGDIPIIGALFRSASYQREQTELVIIVSAHLVTPTRGEALTLPTD 405 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + + F F R +EV GQ+Y G+ G++ Sbjct: 406 RVKPPSENELFLFGRTEHNRSGP-VNEVAGQDYNGSYGYVL 445 >gi|89053488|ref|YP_508939.1| type II and III secretion system protein [Jannaschia sp. CCS1] gi|88863037|gb|ABD53914.1| type II and III secretion system protein [Jannaschia sp. CCS1] Length = 466 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 135/460 (29%), Positives = 225/460 (48%), Gaps = 29/460 (6%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 PI A A + + VE + + +N+ ++++ + ++ V++P AD+ S R++ Sbjct: 21 PISGAQAQGLRV--VEGESTGTLRVPMNRAVVVEAEMLFAELSVANPAIADIATLSERSI 78 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 Y+ G+ G+ + L+G DG + N++I + D+A L LR I + V +D +VL Sbjct: 79 YVLGRAPGRTTMTLLGADGSLIANVEIQVVPDVAELRERLREIIPGEPVEVRTANDGIVL 138 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + RA+EL+E + + ++ NL+ + G+ QV L+V AE++R Sbjct: 139 SGTVGSAFAVDRAMELAERY------------APGRISNLMMVGGQQQVMLQVRFAEMQR 186 Query: 208 DILKQIGFQHSI------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + +++ I G+ G + + G G V Sbjct: 187 TVRQELSASLGIGSTGGNFGTSVGAGNLQGGTGFGTGNLPGGLDGRNGGIGVSFAAGGLQ 246 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 +L ALE +RTLAEP LTA+SG +ASF +GGQ T S S G T++ D+GV Sbjct: 247 LSVLLEALESNGMVRTLAEPNLTALSGATASFLAGGQFPVPTESES-GGTTIEFVDFGVQ 305 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L FTPTV+ I L + E+S + P+ R A T VE+ G + +AGLL+ Sbjct: 306 LDFTPTVVGDHVINLALDAEISSIGEIIATTGAPAINTRNASTVVEMRDGDSFAIAGLLQ 365 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 DD +P L +P+LGALFR++ ++R ++E+ I T LV PV L+ P D Sbjct: 366 DDFTNSVAEVPWLGDLPVLGALFRSASYSRSQSELVIIITAHLVSPVNGEALALPTDRVR 425 Query: 436 VEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFIY 473 + +++ FF +V A +V Q++ G+ G++ Sbjct: 426 IPTESELFFQGQVTGSSPRPGTAAGDVAQQDFSGSYGYVL 465 >gi|126733573|ref|ZP_01749320.1| bacterial type II/III secretion system protein [Roseobacter sp. CCS2] gi|126716439|gb|EBA13303.1| bacterial type II/III secretion system protein [Roseobacter sp. CCS2] Length = 476 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 130/479 (27%), Positives = 223/479 (46%), Gaps = 35/479 (7%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 + L + A + + +S+ +++ ++++ V ++ +++P Sbjct: 9 AAIAGLTLSLTAAAPSIAPAETLRVLRGAASSALSVPMSRAVVVESDVPFTELSIANPGI 68 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 AD+ S RT+Y+ GK G+ + L+G +G+ + N++I + D+A + L + + NI Sbjct: 69 ADISSLSDRTIYVLGKEPGRTTLTLLGENGRLITNVEIHVSPDMAEFKERLTQILPGENI 128 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 V +D +VL G V +I RA++L+E + + ++V NL+ + G QV Sbjct: 129 EVRTANDGIVLSGTVSSIARLDRALDLAERY------------APERVSNLMMVGGTQQV 176 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255 LKV AE++R + K + +++G S + ++ G + + Sbjct: 177 MLKVRFAEMQRSVSKALSTSVALSGLGFDDDVSITGGTNRTIGQSAINGALSGSVPGSNA 236 Query: 256 ---------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 +L ALE +R+LAEP LTA+SGQ A+F +GG++ T + Sbjct: 237 NNGAVLFGFGAGGLEVGILLEALETRGVVRSLAEPNLTALSGQEATFLAGGEYPVPTAND 296 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKA 356 G SV +GV L F P V+ I L + VS N + ++ R+ Sbjct: 297 G-GTISVEFRPFGVELSFVPRVVDHDIINLELSAAVSAIDPSNGFQANGFSVDAFTRRET 355 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 TTVE+ G + +AGLL DD L +P + IP+LGALFR++ + R +TE+ I TP Sbjct: 356 STTVEMRDGESFAIAGLLSDDFTDLNGQLPWVGDIPVLGALFRSAEYARRQTELVIIVTP 415 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK--EASEVEGQNYKGAIGFIY 473 LV P L+ P D + F F +V GP A EV Q++ G+ G++ Sbjct: 416 HLVSPTRGEALALPTDRVRPPTEQGLFLFGQVANEGGPSSGGAGEVARQDFSGSYGYVL 474 >gi|307943145|ref|ZP_07658490.1| type II and III secretion system protein [Roseibium sp. TrichSKD4] gi|307773941|gb|EFO33157.1| type II and III secretion system protein [Roseibium sp. TrichSKD4] Length = 482 Score = 357 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 158/471 (33%), Positives = 266/471 (56%), Gaps = 21/471 (4%) Query: 15 FLFSSNPSVAKLPPIKEANAAV---INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 + S+A +P A A ++++ E + +S+G+ + +I+ V DVLV Sbjct: 22 AGIALVLSLAGVPEPAAAQGAFEKRVHVASGERVSSRLLSVGVGRSVIIDTAEAVADVLV 81 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 S+P AD VV +P +++ G GQAN++L G+++ + ++ +E D + L +++++ Sbjct: 82 SNPGVADAVVRTPNRIFVLGNKAGQANLVLFSRTGRELASFNLRVEPDTSDLVRFIQKYV 141 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 SNI + ++ ++L G D+QRA +L+ + + + ++N++ + Sbjct: 142 PGSNIEAQSLNGNIILSGTAANAADAQRAADLAARYAGDGKK-------ATDILNMITVD 194 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF----GGKFVSEGGDFSV 247 GEDQV LKVT+AEV R+++KQ+G Q + FA D G + + Sbjct: 195 GEDQVHLKVTVAEVDREVIKQLGVQLNGEIKIGNFGFGFANDTSFNAGTSVAQQTTRLAG 254 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + V + + AL+R ++TLAEPTLTAISG++ASF +GG+ +S +V Sbjct: 255 ELVSGGTTIGAEVKALQREGIVKTLAEPTLTAISGENASFLAGGEFPIP-ISQDGNEVTV 313 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELP 363 +GV L FTP VLS GRI L+I TEVSE + + +P+ +VR+A++T+ELP Sbjct: 314 EFKKFGVGLDFTPIVLSGGRISLKITTEVSELSSDGAVNIGTLTIPALKVRRAESTLELP 373 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SGGT+V+AGLL++ +Q G+P L +P+LG+LF++ F R +TE+ + TP++V P+A Sbjct: 374 SGGTLVMAGLLQESYRQSVNGVPGLMNLPVLGSLFKSRDFLRSQTELVVFVTPYIVNPIA 433 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 + RPD + + +D++ F NR+NKIY + + Y G +GFIYK Sbjct: 434 ASKVQRPDKNLAPANDSETLFLNRLNKIY--RANGQNAQAPYHGQVGFIYK 482 >gi|163851903|ref|YP_001639946.1| type II and III secretion system protein [Methylobacterium extorquens PA1] gi|163663508|gb|ABY30875.1| type II and III secretion system protein [Methylobacterium extorquens PA1] Length = 502 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 154/480 (32%), Positives = 247/480 (51%), Gaps = 31/480 (6%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 S P+ A+ + V+ I E +++ + + +I+ +P D ++V V++P A+ Sbjct: 26 SGPASAQAGL--SGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L +L++ + V Sbjct: 84 AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDV 143 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + V D++VL G V + ++Q+A++++ F+ + A + V+N L I +DQV + Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201 Query: 199 KVTIAEVRRDILKQIGF----QHSITGSSSGPSKSFAADF--GGKFVSEGGDFSVKGVLD 252 +VT+ EV R +LKQ G S G + F G + + Sbjct: 202 RVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFPLTGSRSPDANALTASVQTG 261 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307 FSF+ L A E+A R LAEPTLTAISG+SA FT+GG+ S+ S+ Sbjct: 262 GFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVS 321 Query: 308 -------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYR 352 T YGV L FTP V++ RI +RI T+V + + +P Sbjct: 322 QGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTT 381 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ I Sbjct: 382 KRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMI 441 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 TP++ +P+ R + RPDD + D +A R+NKIYG + G Y+G +GFI Sbjct: 442 MVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500 >gi|115525749|ref|YP_782660.1| type II and III secretion system protein [Rhodopseudomonas palustris BisA53] gi|115519696|gb|ABJ07680.1| type II and III secretion system protein [Rhodopseudomonas palustris BisA53] Length = 486 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 156/491 (31%), Positives = 269/491 (54%), Gaps = 38/491 (7%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 R+ R+ ++ S P+ + A +++ +++G++K +++ Sbjct: 12 RFAVRSL-AWTAVAALSLQPAALPVIAADYRPA----VANEGQMNAHFLALGISKSVVID 66 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 +P D++DVLV+DP A V+ S + Y+ G +VGQ N++ G+Q+ DI + RD+ Sbjct: 67 LPRDIKDVLVADPKIATAVIRSAQRAYIIGASVGQTNIVFFDAAGQQIAAYDIAVTRDLN 126 Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + L++ + +++IRVE V V+L G V + ++Q+A E++ + Sbjct: 127 GIRAALKQTLPNTDIRVEGVGPKGVLLSGSVSSPVEAQQAGEVAARLAEGA--------- 177 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FG 235 + V+N + + G DQV LKVT+AEV+RDI+KQ+G S + + +F FG Sbjct: 178 -ENVVNSIAVRGRDQVMLKVTVAEVQRDIIKQMGIDLSASMTYGTAVVNFNNTNPFTAFG 236 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + V+ G+ + L A+E A +RTLAEP LTAISG+SA+F +GG+ Sbjct: 237 RQLVT--GNSLATSFGGGPTVTATLRAMESAGVVRTLAEPNLTAISGESATFIAGGEFPV 294 Query: 296 KTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------ 344 + + G T + +G+ L+FTP V++ GRI LR+ TEVSE + Sbjct: 295 PSGYNYDPVTHVGTTQIAFKKFGISLNFTPVVMTEGRISLRVMTEVSELSNDNSITLTQS 354 Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +PS + R+A+TT+E+PSGG++ +AGL+++ +Q G+P +++IP+LG+LFR+ Sbjct: 355 NGDGLTVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGMAQIPVLGSLFRSR 414 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + +TE+ + TP++V+ VA +DLSRPDD ++ D + +N+IYG + Sbjct: 415 DYVNRQTELMVLVTPYVVRAVAQKDLSRPDDGFAAVSDPQGDLLGSINRIYGVPGKPGPD 474 Query: 462 GQNYKGAIGFI 472 +NY+G GFI Sbjct: 475 -RNYRGTYGFI 484 >gi|188581660|ref|YP_001925105.1| type II and III secretion system protein [Methylobacterium populi BJ001] gi|179345158|gb|ACB80570.1| type II and III secretion system protein [Methylobacterium populi BJ001] Length = 502 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 154/481 (32%), Positives = 246/481 (51%), Gaps = 29/481 (6%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 S+ A P + V+ I E +K+ + + +I+ +P D ++V V++P A Sbjct: 23 STLSGPASAQPGLPGASPVLTIGPNETAVSRKVELSKGRSLIIDLPRDAKEVFVANPAVA 82 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 + VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L +L++ + Sbjct: 83 NAVVRSSRKLFLIGIDNGATSIFVMDAEGRQIAALDVTIARDINVLRQSLQQSLPSGRFD 142 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V+ V D++VL G V + ++Q+A++++ F+ + A V+N L I +DQV Sbjct: 143 VKAVGDSLVLSGSVNSASEAQQALDIANAFVGIAAGGGVATRG--TVINNLTIRNKDQVM 200 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGP------SKSFAADFGGKFVSEGGDFSVKGVL 251 ++VT+ EV R +LKQ G S ++ P + + G + + Sbjct: 201 IRVTVVEVARTVLKQFGISTSGNWAALNPLGGNVFTNNTGFPLTGSRSPDANAITASVQT 260 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------------TVS 299 FSF L A E+A R LAEPTLTAISG+SA FT+GG+ T Sbjct: 261 GGFSFRATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCAAASTVSIGTSI 320 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSY 351 S ++T YGV L FTP V++ RI +RI T+V + + +P Sbjct: 321 SQGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGT 380 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ Sbjct: 381 TRRSSETTVELASGATMMTAGLIQQKNRGAISGLPGLMNLPILGALFRSRDYQRDETELM 440 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471 I TP++ +P+ R + +PDD Y D +A R+NKIYG + G Y+G +GF Sbjct: 441 IMVTPYIAQPMEARQVQKPDDGYVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGF 499 Query: 472 I 472 I Sbjct: 500 I 500 >gi|302037439|ref|YP_003797761.1| putative pilus assembly protein CpaC [Candidatus Nitrospira defluvii] gi|300605503|emb|CBK41836.1| putative Pilus assembly protein CpaC [Candidatus Nitrospira defluvii] Length = 485 Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 140/487 (28%), Positives = 226/487 (46%), Gaps = 41/487 (8%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L + L + A A + D++ + +S+ K ++L P+ +++P Sbjct: 11 TLRGIGSGLFALFLVTVAQAHEVASPDIQTRVPRSLSLITGKSLVLDSPIPFSRASIANP 70 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 AD +V SP+ +Y+ GK G N+ L +G D+ + D+ L+ L + D Sbjct: 71 DIADTLVLSPKQLYVIGKAAGTTNLTLWDAEGSVYALYDLAVSPDLTRLKEHLHQLFPDE 130 Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 N ++V D + L G V + AV+++ET+ Q KV+NLL + G Sbjct: 131 NDLQVMAAHDRLTLTGTVSSATHVSEAVDVAETYARQ------------KVINLLRVGGL 178 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSG---------------PSKSFAADFGG 236 QV L+V +AE+ R +L+++G + G S G PS + A G Sbjct: 179 HQVMLEVRVAEMERTLLRRLGVNLAAASGGQSFGVSSLKNLATVLPPTDPSAALVAGPVG 238 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 VS+ + ++ S+ + AL+ ++ LAEPTL A+SGQ A F +GG+ Sbjct: 239 LGVSQAVNALLRFQTGSTSWTGFIDALKEENLVKVLAEPTLVALSGQEAHFLAGGEFPIP 298 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352 V + G T++ +G+ L+F P VLSP RI + + EVS+ + + +P+ Sbjct: 299 -VPQAFGVTTIQFKKFGIQLNFNPVVLSPTRISVTVAPEVSDLDFANGLSLQGFVVPAIT 357 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+A T VEL G + +AGLL+D +++ P+L IPILGALFR+S F + ETE+ I Sbjct: 358 TRRASTVVELEDGQSFAVAGLLRDTVRETVSKFPVLGDIPILGALFRSSSFQKNETELVI 417 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN------KIYGPKEASEVEGQNYK 466 TP LV PV +L P Y DD + R+ + P Sbjct: 418 IVTPHLVTPVTEAELPLPTGQYLEPDDVDFYLMGRLQSRKDKVRTPLPPATQLPFEDRLA 477 Query: 467 GAIGFIY 473 G +G + Sbjct: 478 GPVGHMM 484 >gi|110679396|ref|YP_682403.1| type II/III secretion system protein, putative [Roseobacter denitrificans OCh 114] gi|109455512|gb|ABG31717.1| type II/III secretion system protein, putative [Roseobacter denitrificans OCh 114] Length = 463 Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 125/471 (26%), Positives = 224/471 (47%), Gaps = 22/471 (4%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 ++ L SV+ + +A + + + +++ N+ ++++ + ++ Sbjct: 6 ILKAALLGLAISVSPIAFTAPLSAQAEALRIIARETSETLNVSQNRAVVVESEIPFAELS 65 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 +++P AD+ S R++Y+ GK G + L+ G+ + N+++ + D+ + LR+ Sbjct: 66 IANPGIADISSLSDRSIYVLGKVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKERLRQI 125 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + I V +D +VL G V + Q +A+EL+ + + +V NL+ + Sbjct: 126 LPGEAIEVRTANDGIVLSGQVSSSQRLSKALELAARY------------APDRVSNLMTV 173 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--GDFSVK 248 G QV LKV AE+ R + KQ+ I GS + ++ G Sbjct: 174 GGVQQVMLKVRFAEMSRGVSKQLQSSLRIGGSDAQAGIGRGIGGIPNLAADSAQGAVFFD 233 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 L + +L ALE A+RTLAEP L ++SGQ A+F +GG++ S SV Sbjct: 234 FGLGSTQVQLLLEALETKGAVRTLAEPNLVSLSGQEANFLAGGEYPVPV--QSEDGISVD 291 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD---MPSYRVRKADTTVELP 363 +G+ L+F P V+ I L++ S +P G++ GD + ++ R+A TTVE+ Sbjct: 292 FKPFGIELNFVPRVVDGDLINLQLSAATSSIDPSNGISVGDGFTVDAFIRREASTTVEMR 351 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G + +AGLL+D+ +P +S +PILGALFR++ + R +TE+ I T LV P Sbjct: 352 DGESFAIAGLLEDNFNDNITQVPWISDVPILGALFRSTDYMRNQTELVIIITAHLVTPTR 411 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNR-VNKIYGPKEASEVEGQNYKGAIGFIY 473 L+ P D + F R + + A EV Q++ G+ G++ Sbjct: 412 GEALALPTDRIRPPSEKDLFLNGRTIETLNARGSAGEVAKQDFSGSYGYVM 462 >gi|163733542|ref|ZP_02140985.1| type II/III secretion system protein, putative [Roseobacter litoralis Och 149] gi|161393330|gb|EDQ17656.1| type II/III secretion system protein, putative [Roseobacter litoralis Och 149] Length = 440 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 124/451 (27%), Positives = 219/451 (48%), Gaps = 24/451 (5%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A A + I + + +++ N+ ++++ + ++ +++P AD+ S R++Y+ G Sbjct: 6 AQAEALRI--IARETSETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSDRSIYVLG 63 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 K G + L+ G+ + N+++ + D+ + LR+ + I V +D +VL G V Sbjct: 64 KVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKERLRQILPGEAIEVRTANDGIVLSGQV 123 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + Q +A+EL+ + + +V NL+ + G QV LKV AE+ R + K Sbjct: 124 SSSQRLSKALELAARY------------APDRVSNLMTVGGVQQVMLKVRFAEMSRGVSK 171 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAI 269 Q+ I G+ + ++ G L + +L ALE A+ Sbjct: 172 QLQSSLRIGGTEAQAGIGRGIGGIPNLAADTAQGAVFFDFGLGSTQVQLLLEALETKGAV 231 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 RTLAEP L ++SGQ A+F +GG++ S SV +G+ L+F P V+ I Sbjct: 232 RTLAEPNLVSLSGQEANFLAGGEYPVPV--QSEDGISVDYKPFGIELNFVPRVVDGDLIN 289 Query: 330 LRIQTEVS--EPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L++ S +P G++ GD + ++ R+A TTVE+ G + +AGLL+D+ Sbjct: 290 LQLSAATSSIDPSNGISVGDSFTVDAFIRREASTTVEMRDGESFAIAGLLEDNFNDNISQ 349 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +P LS +PILGALFR++ + R +TE+ I T LV P L+ P D + F Sbjct: 350 VPWLSDVPILGALFRSTDYMRNQTELVIIITAHLVTPTRGEALALPTDRIRPPSEKDLFL 409 Query: 445 FNR-VNKIYGPKEASEVEGQNYKGAIGFIYK 474 R + + A EV Q++ G+ G++ + Sbjct: 410 NGRTIQTLNARGAAGEVAKQDFGGSYGYVME 440 >gi|85859139|ref|YP_461341.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB] gi|85722230|gb|ABC77173.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB] Length = 503 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 132/502 (26%), Positives = 230/502 (45%), Gaps = 52/502 (10%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 + + + + LP + V+ V + +K+++ + K I++ P +++ V Sbjct: 12 VACCLISIALCFLIALPCVAAGPDRVV----VNTSRPQKLTLTVGKSTIVECPQNLKRVS 67 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 ++ P AD++ SPR +YL GK G N+ L D M +D+ + D+ L+ + Sbjct: 68 IAAPDYADILTLSPRQIYLTGKMAGNTNLTLWRSDNSVMSVIDVEVLPDVVGLKEKIHSM 127 Query: 131 IADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + D +IRV D + L G V + + + + L+ ++ + + V N L Sbjct: 128 MPDEKDIRVTATPDAITLSGTVSSAANMNQVMSLANSYAPK------GKDKTGGVNNFLE 181 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----------------------- 226 + G QV L+V ++E+ R ++K++G + Sbjct: 182 VGGVHQVMLEVRVSEMSRSLIKKLGINWNYLSEGGNTFGMSMLDNLTYTVSPSDANIQPM 241 Query: 227 ---SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S S A G VS + + ++ + A++ ++ LAEPTL +SG+ Sbjct: 242 THLSASEGAVSVGTLVSSSVGLAFRFFGGGATWTLFIDAMKDQGLLKVLAEPTLLTLSGK 301 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339 +ASF +GG+ ++ +GV L+FTPTVLS +I +++ EVS+ Sbjct: 302 TASFLAGGEFPIPVPQEEN--ITIEYKPFGVGLNFTPTVLSNKKISMQVSPEVSDLDYTN 359 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + V +PS R+ TTVEL G + +AGLLKDDI+Q+ +PLL IP+LG+LFR Sbjct: 360 AVAVGGYAVPSITTRRVATTVELADGQSFAIAGLLKDDIRQIVRKVPLLGDIPVLGSLFR 419 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 +S+F + ETE+ I TP LVKP+ M + P D Y +D + + + A+ Sbjct: 420 SSQFRKNETELVIIVTPRLVKPLDMTKQTLPTDQYVEPNDFEFYLLGSLEGKGENDSATP 479 Query: 460 VEGQN---------YKGAIGFI 472 + +G G+I Sbjct: 480 TPVSSALPGDKTGGLEGDFGYI 501 >gi|146342078|ref|YP_001207126.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278] gi|146194884|emb|CAL78909.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. ORS278] Length = 492 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 164/493 (33%), Positives = 274/493 (55%), Gaps = 41/493 (8%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 L R +I L NP++A + ++ +A +++ ++ +S+G+ K +++ P Sbjct: 17 LMRALAMSAAIALV-LNPALAPVKAAEDRDAPTVSVGSSKV---HYLSLGIGKSVVVDFP 72 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 DV+DVLV+DP A+ VV S + Y+ G +GQ NV+ +G+Q+ DI I+RD+ + Sbjct: 73 QDVKDVLVADPKIANAVVRSAKRAYIIGAAIGQTNVVFFDGEGQQVAAYDIAIKRDLNGV 132 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 L + I ++++ V D V+L G V + ++Q+A E++ + + K Sbjct: 133 RQALSQSIPG--VKIDGVGDGVILTGSVSSPVEAQQAGEIAARLVGGA----------DK 180 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----GKFV 239 V+N + + G DQV LKV ++EVRR+I+KQ+G S + + +F GK + Sbjct: 181 VVNSIVVRGRDQVMLKVNVSEVRREIVKQLGIDLSASMTYGTAVVNFNQTNPFTAYGKSL 240 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G S G + S + A+E A ++TLAEP LTAISG+SA+F +GG+ Sbjct: 241 AAGNGLSAIGGGNLSSVSATMRAMETAGVVKTLAEPNLTAISGESATFIAGGEFPVPGGY 300 Query: 300 SST-----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------------PVI 341 S +TSV +G+ L+FTP VLS GRI LR+ TEVSE Sbjct: 301 SCDPKTGLCSTSVMFKKFGISLNFTPVVLSEGRISLRVMTEVSELSNDNAITLSYATSAN 360 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 ++ +P+ R R+A+TT+E+PSGG++ +AGL+++ +Q G+P L+++P+LG LFR+ Sbjct: 361 SASSVTIPAIRTRRAETTLEIPSGGSMAMAGLIQNQTKQAINGLPGLNQLPVLGQLFRSQ 420 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG-PKEASEV 460 + ETE+ + TP++V+ VA ++LSRPDD ++ D+++ R+N++YG + V Sbjct: 421 DYVNNETELMVLVTPYVVRAVAQKELSRPDDGFAPATDSESALLGRMNRLYGVAAKVDAV 480 Query: 461 EGQNYKGAIGFIY 473 GQ GFI Sbjct: 481 TGQP--AGFGFII 491 >gi|85705151|ref|ZP_01036251.1| bacterial type II/III secretion system protein [Roseovarius sp. 217] gi|85670473|gb|EAQ25334.1| bacterial type II/III secretion system protein [Roseovarius sp. 217] Length = 428 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 126/440 (28%), Positives = 210/440 (47%), Gaps = 33/440 (7%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 +N+ ++++ ++ +++P AD S RT+Y+ GK G+ + L G+ + N+D Sbjct: 1 MNRAVVVESDSPFAELSIANPAIADFSTLSDRTIYVLGKTPGRTTLSLFDGAGQLITNID 60 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 + + DI + L++ + I V +D +V+ G V + QRA++L+E + Sbjct: 61 VHVSTDIEEFKERLKQILPGEPIEVRSANDGIVISGTVSSSSRMQRALDLAERY------ 114 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA- 232 + ++V NL++++G+ QV LKV AE++R + K + SI + F Sbjct: 115 ------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKALSTSLSIDARGANQVGVFGGT 168 Query: 233 ----DFGGKFVSEGGD----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 GG S G F+ + +L ALE +RTLAEP LT Sbjct: 169 NTTNTLGGVLGSTAGTIPGANDNNGVFNFGFDVGSVEVGILLEALETKGVVRTLAEPNLT 228 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A+SGQ A F +GG+ V+ T+V +GV L+F P V+ G I L + VS Sbjct: 229 ALSGQEAKFLAGGEFPVP-VAQDNDTTTVEFKPFGVELNFVPRVVDDGIINLEMAAAVSS 287 Query: 339 PVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + +P++R R TTV L G + +AGLL+DD + +P L +P+L Sbjct: 288 IDTSNSLVSDGFSIPAFRRRDTSTTVALRDGESFAIAGLLQDDFRDNAGQVPWLGDVPVL 347 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 GALFR++ + R +TE+ I + LV P L+ P D + + F RV Sbjct: 348 GALFRSADYQRSQTELVIIVSAHLVSPSRGEALALPTDRVKLPSEKDLFLNGRVANGVSD 407 Query: 455 KEA-SEVEGQNYKGAIGFIY 473 + A EV Q++ G+ G++ Sbjct: 408 RGAVGEVAKQDFTGSYGYVM 427 >gi|254510970|ref|ZP_05123037.1| bacterial type II/III secretion system protein [Rhodobacteraceae bacterium KLH11] gi|221534681|gb|EEE37669.1| bacterial type II/III secretion system protein [Rhodobacteraceae bacterium KLH11] Length = 476 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 129/483 (26%), Positives = 221/483 (45%), Gaps = 33/483 (6%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T + +S L + V+ + A N+ V+ G + + + +N+ I+++ Sbjct: 10 TIRSWISATLLGLSLVVSPIGDAAWAQ----NLRVVKKGTAESLDVPVNRAIVVESEQPF 65 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 D+ +++ AD+ S RT+Y+ G+ G + + G + N+ + + D+ + Sbjct: 66 ADISIANAGIADISTLSDRTIYVLGRAPGITTLTMFDGAGNLITNVRVRVSPDVTEFKER 125 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 LR+ + + I V +D +VL G V + RA+EL+E + + ++V N Sbjct: 126 LRQILPNEQIEVRTANDGIVLSGTVSSSARLARALELAERY------------APERVSN 173 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----------SSSGPSKSFAADFGG 236 LLN+ G QV LKV AE+ R + K + G ++ G + A+ Sbjct: 174 LLNVGGVQQVMLKVRFAEMNRSVAKNLSASLGFGGGDATGGFNSLNNQGALNNALANNIP 233 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G +L ALE +R+LAEP L+A+SGQ A F +GG+ Sbjct: 234 FVQTNSGAVLFGFGAGSTQVRLLLEALETKGLVRSLAEPNLSALSGQEAEFLAGGEVPIP 293 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYR 352 V G ++ +GV L F P V+ I L + VS +N +PS+ Sbjct: 294 -VPQGDGVVAIEYRQFGVQLLFVPRVVDGNLINLELGASVSSIDQSSDFTINGDSVPSFI 352 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ TT+EL G + +AGL++DD L +P L +P+LGALFR++++ RE++E+ I Sbjct: 353 TRQTRTTIELRDGESFAIAGLIQDDFTDLNTQVPWLGDVPVLGALFRSAQYQREQSELII 412 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY--GPKEASEVEGQNYKGAIG 470 T LV P L+ P D + F +V + G ASEV Q++ + G Sbjct: 413 IITAHLVSPTRGEALALPTDRVKPPSEFDLFVNGKVARTERAGNGAASEVAKQDFGTSYG 472 Query: 471 FIY 473 ++ Sbjct: 473 YVL 475 >gi|296444395|ref|ZP_06886360.1| type II and III secretion system protein [Methylosinus trichosporium OB3b] gi|296258042|gb|EFH05104.1| type II and III secretion system protein [Methylosinus trichosporium OB3b] Length = 485 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 169/488 (34%), Positives = 261/488 (53%), Gaps = 27/488 (5%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 R+L T T +++ S P+VA A + SD + +++++G+ K II+ Sbjct: 6 RHLIPTLATALALVGAGSLPAVA-------APQSWGVESDSDAIMSRRVAMGVGKSIIVD 58 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 +P D +++V +P A+ VV S R +Y+ G GQ + + G+Q+ NL+I I RD+ Sbjct: 59 LPADAAEIVVGNPKVANAVVRSTRKLYIMGVETGQTTIFALDRSGRQIANLEISIGRDVG 118 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS-- 179 L L + +SNI V+D ++L G V + ++QRAV++++ F ++S ++ Sbjct: 119 ELGPLLHAALPNSNISARTVNDAIILTGTVDSASEAQRAVDIAKGFAARSASASAQSAGG 178 Query: 180 --SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADF 234 + V+N L I +DQV LKVT+AEV R +LKQ+G G + G + + Sbjct: 179 SPADGLVVNALVIRTQDQVMLKVTVAEVERRVLKQLGISAQSGGETLLKGGWGQLVQQNP 238 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 V+ S + L A ER R LAEPT+TAISG+SA FT GG+ Sbjct: 239 FA--VNSALTASSLTINGNNGSTATLQAYERYGVSRVLAEPTVTAISGESAKFTVGGEIA 296 Query: 295 YKTVSSSTGATS------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----N 344 SS ++ + YGV L+FTP VL+ GRI L + TEV+E N Sbjct: 297 VPGNSSCIAGSTLCSSVGIVFKPYGVSLNFTPVVLAQGRILLHLATEVTEIDYQAAQAYN 356 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P ++ RK +T+VELPSGG+I AGLL Q G+P L +P+LGALFR+ + Sbjct: 357 GVTVPGFKTRKNETSVELPSGGSIATAGLLTQKSDQAINGLPGLINLPVLGALFRSRDYQ 416 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 R ETE+ I TP++ + ++ RD++RPDD ++ D +A+ RVN++Y + + Q Sbjct: 417 RNETELLIVVTPYIARALSARDVTRPDDGFADASDPQAWLLGRVNRLYANPQHPQAAPQ- 475 Query: 465 YKGAIGFI 472 KG IGFI Sbjct: 476 LKGRIGFI 483 >gi|218530654|ref|YP_002421470.1| type II and III secretion system protein [Methylobacterium chloromethanicum CM4] gi|218522957|gb|ACK83542.1| type II and III secretion system protein [Methylobacterium chloromethanicum CM4] Length = 499 Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 150/477 (31%), Positives = 251/477 (52%), Gaps = 28/477 (5%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 S P+ A+ + V+ I E +++ + + +I+ +P D ++V V++P A+ Sbjct: 26 SGPASAQAGL--SGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 VV S R ++L G + G ++ ++ +G+Q+ LD+ I RDI L +L+ + V Sbjct: 84 AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQLSLPGGRFDV 143 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + V D++VL G V + ++Q+A++++ F+ + A + V+N L I +DQV + Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGP--------SKSFAADFGGKFVSEGGDFSVKGV 250 +VT+ EV R +LKQ G + ++ P + + G + +G S Sbjct: 202 RVTVVEVARTVLKQFGINVTGNWAALNPLSPTGNVLTNTTPFPLTGAYSPDGNALSASIR 261 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGAT 305 S + L A E+A R LAEPTLTAISG+SA FT+GG+ + V+ + Sbjct: 262 SGGVSLQATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPSNCSAGVAGAACTV 321 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRK 355 ++ YGV L FTP V++ RI +R+ T+V+E + +P+ R Sbjct: 322 ALEFKPYGVSLAFTPIVMAENRISIRVATDVTELDRQNSYSFSFPGSNRVTPVPATTRRS 381 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ + R+ETE+ I T Sbjct: 382 SETTVELASGATMMTAGLIQQKSRASISGLPGLMNLPILGALFRSRDYQRDETELMIMVT 441 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 P++ +P+ R + RPDD + D +A R+NKIYG + G Y+G +GFI Sbjct: 442 PYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 497 >gi|254475652|ref|ZP_05089038.1| type II and III secretion system protein:Transport-associated [Ruegeria sp. R11] gi|214029895|gb|EEB70730.1| type II and III secretion system protein:Transport-associated [Ruegeria sp. R11] Length = 452 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 124/465 (26%), Positives = 227/465 (48%), Gaps = 33/465 (7%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 +P + A A + + V+ G + + +N+ ++++ V ++ +++P+ AD+ S R Sbjct: 3 MPSAQGAWAEGLRV--VKKGTSSNLEVPMNRAVVVESDVPFSELSIANPSIADISSLSDR 60 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 T+Y+ GK+ G + G G+ + N+D+ + D++ + LR+ + I V +D + Sbjct: 61 TIYVLGKSPGPDHPHAFGCVGRLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGI 120 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 VL G+V + QRA++L+E + + +V NL+++ G QV LKV AE+ Sbjct: 121 VLSGVVSSSARLQRALDLAERY------------APDRVSNLMSVGGVQQVMLKVRFAEM 168 Query: 206 RRDILKQIGFQHSITG----------SSSGPSKSFAADFGGKFVS---EGGDFSVKGVLD 252 +R + K + + G S+ + G + G F Sbjct: 169 QRTVSKSLSASLGVNGGNSVGVNGGTSTLNTQGALTNSLTGNIPAANDNTGAFVFGFNAG 228 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F +L ALE+ +RTLAEP L+A+SGQ A F +GG++ V+ G ++ + Sbjct: 229 AFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDGVITIEFKPF 287 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTI 368 G+ L+F P V+ I L ++ VS +N + ++ R++ TTVE+ G + Sbjct: 288 GIELNFIPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRESVTTVEMRDGESF 347 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +AGL++D+ + +P + +P+LG+LFR++ + R +TE+ I + LV P LS Sbjct: 348 AIAGLIRDEFRDNSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLVTPTRGEALS 407 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 P D + F F V + ASEV Q++ G+ G++ Sbjct: 408 LPTDRIRPPSETDLFLFGNVARER-KGPASEVAKQDFNGSYGYVL 451 >gi|254473733|ref|ZP_05087128.1| type II and III secretion system protein [Pseudovibrio sp. JE062] gi|211957119|gb|EEA92324.1| type II and III secretion system protein [Pseudovibrio sp. JE062] Length = 456 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 165/471 (35%), Positives = 272/471 (57%), Gaps = 23/471 (4%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 M++ L + P +A EA V + V++ +++++G + I+L +V+DVLV Sbjct: 1 MALTLTVTAPQLATAQTNFEATVEVTSQHSVKV---RQLNVGEGRSIVLNTNEEVRDVLV 57 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 S+P AD VV + +++FG GQA+++L G+ GKQ+ + ++ ++ D + L ++R + Sbjct: 58 SNPKIADAVVRTRNRVFVFGNETGQASLVLFGNGGKQLASFNLNVQPDPSGLIELIQRLL 117 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 +S I ++V+++VVL G + ++Q+A +++ F+ KK++N + +A Sbjct: 118 PNSAINADIVNESVVLSGTAISALEAQQAYDIALKFVGND---------DKKIVNTIAVA 168 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFVSEGGDFSVK 248 +DQV LKVT+AEV R +KQ+G S F V G F + Sbjct: 169 EKDQVQLKVTVAEVERTTIKQLGVSLQGALSIGALDVKFNTSPAYNINPSVVNAGLFQGQ 228 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + S + ALER ++TLAEPTL A+SG++ASF +GG+ V+ S+ Sbjct: 229 LPIGGGSIVPTIKALERDGVMKTLAEPTLVAVSGENASFLAGGEFPIP-VAYEDNKISLE 287 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELP 363 +GV L FTP VLS GRI LRI+TEVSE A + + +VR+A++T+ELP Sbjct: 288 FKPFGVGLDFTPVVLSEGRIKLRIKTEVSELSSEGAVNLAGAISVSALKVRRAESTLELP 347 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SGGT+V+AGLLK + Q +GIP L +PILG +F++ + ++TE+ I TP++V+PVA Sbjct: 348 SGGTLVMAGLLKHNYGQEIDGIPGLKDVPILGTMFKSRDYINKQTELVIFVTPYVVRPVA 407 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 ++RPDD+++ D F N++++IY +A V+G +Y G IG+IY+ Sbjct: 408 RSQIARPDDNFAAPSDQSTIFLNQLSRIYRSTDAP-VKG-SYHGKIGYIYE 456 >gi|148256957|ref|YP_001241542.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1] gi|146409130|gb|ABQ37636.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1] Length = 489 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 164/493 (33%), Positives = 272/493 (55%), Gaps = 40/493 (8%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 +L R F T +I L + NP++A + ++ + V+++ ++ +S+G+ K +++ Sbjct: 14 WLVRAFSTAAAIGL-AINPALAPVHAAEDRDTPVVSVGSSKV---HYLSLGIGKSVVVDF 69 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 P DV+DVLV+DP A+ VV S R Y+ G VGQ NV+ +G+Q+ DI I+RD+ Sbjct: 70 PQDVKDVLVADPKIANAVVRSARRAYIIGAAVGQTNVVFFDGEGQQVAAYDIAIKRDLNG 129 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + L + I ++++ V D V+L G V + ++Q+A E++ + S Sbjct: 130 VRQALSQSIPG--VKIDGVGDGVILTGSVSSPVEAQQAGEIASRLVG----------GSD 177 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----GKF 238 KV+N + + G DQV LKV ++EVRR+I+KQ+G S + + +F GK Sbjct: 178 KVVNSIVVRGRDQVMLKVNVSEVRREIVKQLGIDLSASMTYGTAVVNFNNTNPFTAYGKS 237 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + G +V G S + A+E A +TLAEP LTAISG+SA+F +GG+ Sbjct: 238 LVNGNALNVSG-GGLSSVSATMRAMETAGVTKTLAEPNLTAISGESATFIAGGEFPVPGG 296 Query: 299 -----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------- 346 ++ TS+T +G+ L+FTP VLS GRI LR+ TEVSE Sbjct: 297 YNCDPTTRVCTTSITYKKFGISLNFTPVVLSEGRISLRVMTEVSELSNDNAITVSYALTS 356 Query: 347 ------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +P+ R R+A+TT+E+PSGG++ +AGL+++ +Q G+P + ++P+LG LFR+ Sbjct: 357 TSSSSVTIPAIRTRRAETTLEIPSGGSMAMAGLIQNQTKQAINGLPGVDQLPVLGQLFRS 416 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 + ETE+ + TP++V+ VA ++L+RPDD ++ D+++ R+N++YG + Sbjct: 417 KDYVNNETELMVLVTPYVVRAVAQKELARPDDGFAPATDSESALLGRMNRLYGIAAKVDT 476 Query: 461 EGQNYKGAIGFIY 473 G GFI Sbjct: 477 ATGEPAG-FGFII 488 >gi|83950066|ref|ZP_00958799.1| bacterial type II/III secretion system protein [Roseovarius nubinhibens ISM] gi|83837965|gb|EAP77261.1| bacterial type II/III secretion system protein [Roseovarius nubinhibens ISM] Length = 429 Score = 349 bits (896), Expect = 5e-94, Method: Composition-based stats. Identities = 133/441 (30%), Positives = 216/441 (48%), Gaps = 34/441 (7%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 +N+ I+++ V ++ V++ + AD S RT+YL GK G+ + L+ G+ + N++ Sbjct: 1 MNRAIVVESDVPFAELSVANASIADFSTLSDRTIYLLGKAPGRTTLTLLDEAGRLITNVE 60 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 I + DI+ + LR+ + + I V +D +VL G+V + QRA++L++ + Sbjct: 61 IHVSADISEFKERLRQILPNEKIEVRTANDGIVLSGVVSSTPRMQRALDLAQRY------ 114 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 + ++V NL++++G+ QV LKV AE++R + K +G I G S+ + Sbjct: 115 ------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKSLGTSLFIDGLSNAGIGGAIST 168 Query: 234 FG---------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 G G + G + ++ ALE +RTLAEP LT Sbjct: 169 NGIGSSAQTPVGVQPGTGTAGTNNGAAFIGLNAGSAQVGILIQALESKGLVRTLAEPNLT 228 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A+SGQ A+F +GG++ V+ GA +V +GV L+F P VL I L I VS Sbjct: 229 ALSGQEANFLAGGEYPIP-VAQEEGAIAVEFKPFGVQLNFVPYVLDDEVINLEIAAAVSS 287 Query: 339 PVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 D + +R R TTV L G + +AGLL+DD + +P L +PIL Sbjct: 288 IDPSNGYSDGTITIAGFRTRSTSTTVSLRDGDSFAIAGLLQDDFEDTNGQVPWLGDLPIL 347 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 GALFR++ + R +TE+ I T LV P L+ P D +A F RV + Sbjct: 348 GALFRSANYQRSQTELVIIVTAHLVTPTRGEALALPTDRVLPPSEADLFLNGRVARQVRN 407 Query: 455 KEAS--EVEGQNYKGAIGFIY 473 + S EV Q++ G+ G++ Sbjct: 408 SKGSVGEVAKQDFNGSYGYVM 428 >gi|157375508|ref|YP_001474108.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis HAW-EB3] gi|157317882|gb|ABV36980.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis HAW-EB3] Length = 483 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 117/435 (26%), Positives = 209/435 (48%), Gaps = 24/435 (5%) Query: 44 IGKGKKI-SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 G + I I + K +L++ + V V +P D+ + +Y+ GK +G N+++ Sbjct: 33 TGASRDIKHIPIFKSRVLKLKQAIHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIMVW 92 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 + + + +DI I D+ L+ L F+ + V+ +++ G +Q AVE Sbjct: 93 DKNEQLVDVIDIEITHDLNGLKTRLHEFLPGEKLGVQTSQGQLLISGQASNLQKMNTAVE 152 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG- 221 L++ + + ++ ++ V+N++ + G+ QV L+V IAEV++++ +Q + I Sbjct: 153 LAQAYADAASVSKVKST----VLNMMTVGGDHQVMLEVVIAEVQKEVARQFDSKFFIFNK 208 Query: 222 ------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 ++G +F D S G F + + L ++ + LAEP Sbjct: 209 GDKGFIGTAGAGGTFDLDPAAAIDSRG--FFARYLDGNLMMNFALDVAKQHGLAKVLAEP 266 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +TA+SGQSA F SGG+ V + G+T++ D+GV + F P+VL G+I L + Sbjct: 267 NVTAMSGQSAEFLSGGEFPIP-VPGTNGSTTIQYRDFGVGVKFVPSVLDSGQINLNLNVM 325 Query: 336 VSEPVI---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE A +PS R TTVEL G TI ++GL+ D +++ + +P Sbjct: 326 VSEVSNANSVTLSGGSNTALVVPSIVKRTTATTVELADGQTIAISGLISDTLRENIDKLP 385 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 L IPILG LF + F ++E+ I TP LV+P + +S P D + + D + + Sbjct: 386 GLGDIPILGQLFTSKSFQSGQSELVILVTPRLVRPFNKKQISLPTDDFVLPSDMEFYLLG 445 Query: 447 RVNKIYGPKEASEVE 461 +++ +E E Sbjct: 446 KMSHKQSEQEKHETP 460 >gi|27375777|ref|NP_767306.1| hypothetical protein bll0666 [Bradyrhizobium japonicum USDA 110] gi|27348915|dbj|BAC45931.1| bll0666 [Bradyrhizobium japonicum USDA 110] Length = 505 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 167/501 (33%), Positives = 280/501 (55%), Gaps = 47/501 (9%) Query: 6 RTFFT--MMSIFLFSS--NPSVAKLP-----PIKEANAAVINISDVEIGKGKKISIGLNK 56 RTF+ M+++ L ++ S A+ P P++ + V ++ + K + +S+G+ K Sbjct: 18 RTFWAGAMLTLGLLAAPGLVSAAEAPVGDQAPLQAPDLGVASVGTIAPAKTRFLSLGVGK 77 Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 +++ +P +V+DVLV+DP A+ V+ S + Y+ G VGQ NV+ DG+Q+ DI + Sbjct: 78 SVVIDLPREVKDVLVADPKIANAVIRSAQRAYIIGGQVGQTNVVFFTADGQQVAAYDIAV 137 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 +RD+ + LR+ + +++E + D+V+L G V + ++Q+A E++ + Sbjct: 138 KRDLNGMRAALRQSLPG--VQIEGIGDSVMLTGSVSSPVEAQQAGEVAAKLVG------- 188 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--- 233 S+KV+N + + G DQV LKV + EVRRDI+KQ+G S + ++ +F Sbjct: 189 ---GSEKVVNNIVVRGRDQVMLKVVVGEVRRDIVKQLGVDLSASLNAGTAVVNFNNSNPF 245 Query: 234 --FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 GG VS G + + A+E A +RTLAEP+LTAISG+SA+F +GG Sbjct: 246 SVSGGPLVSSNGLGVTGLAKGVATVNATMRAMETAGVMRTLAEPSLTAISGESATFIAGG 305 Query: 292 QHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------- 338 + + T +T +G+ L+FTP VLS GRI LR+ TEVSE Sbjct: 306 EFPIPGGYACDPVTHVCTTQITYKKFGISLNFTPVVLSEGRISLRVMTEVSELSNQNAIS 365 Query: 339 -----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 ++ +PS + R+A+TT+E+PSGG++ +AGL++ +Q G+P + ++PI Sbjct: 366 VTQAVSASQTSSVTIPSIQTRRAETTLEIPSGGSMAMAGLIQQQTKQAINGLPGVDQVPI 425 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 +GALFR+ F ETE+ + TP++V+ VA ++LSRPDD ++ DA+ R+N++YG Sbjct: 426 IGALFRSQDFVNNETELMVIVTPYVVRAVAQKELSRPDDGFAPASDAQTALLGRMNRLYG 485 Query: 454 -PKEASEVEGQNYKGAIGFIY 473 + ++G +G GFI Sbjct: 486 IARRVDPIDGA--RGDFGFII 504 >gi|90411206|ref|ZP_01219219.1| Flp pilus assembly protein [Photobacterium profundum 3TCK] gi|90328052|gb|EAS44373.1| Flp pilus assembly protein [Photobacterium profundum 3TCK] Length = 489 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 127/447 (28%), Positives = 216/447 (48%), Gaps = 41/447 (9%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 ++V + + IS+ NK ++++P + + V +P AD+++ +Y+ GK G N Sbjct: 27 TTNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNKIYVLGKQFGTTN 86 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 VI+ + + LD+ + D+ L+ L F+ + I V + +VL G V + Sbjct: 87 VIIWDSKDRLITVLDVEVTHDLNALKSKLYEFMPNEKISVYTSQNKLVLSGEVSSADKIA 146 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF--- 215 AVE++ TF ++ +++NL+ + G QV L+VT+AEV+R ++++ Sbjct: 147 TAVEIANTF-----------TADGEIINLMAVGGSHQVMLEVTVAEVQRSLVREFDSKFV 195 Query: 216 ------QHSITGSSSGPSKSFAADFGGKF----VSEGGDFSVKGVLDRFSFETVLHAL-- 263 + G++ G S VS + G+ F L A Sbjct: 196 FARQSGNWTWGGANGGASVPSNVGILDPILDAAVSNPLNIDDNGLFASFLSSNTLFAAAF 255 Query: 264 ---ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 + + LAEPTLTAISG+ A F SGG+ + ++ ++GV L F P Sbjct: 256 DIAKTNGLAKVLAEPTLTAISGEEAEFISGGEFPIPVPNDEN--ITIEFKEFGVALKFLP 313 Query: 321 TVLSPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 TV+S I L + EVSE P + +PS R A TT+EL +G TI + Sbjct: 314 TVMSADSINLALNIEVSEISNQNAVSITPGGTNSQFFVPSLSKRGAKTTIELGNGQTIGI 373 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL ++I + + +P L +PI+G LFR+ F + ETE+ I TP L KPV +D++ P Sbjct: 374 AGLLNENITDVVDKLPGLGDLPIIGQLFRSQSFRKGETELVILVTPRLAKPVRKQDITLP 433 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEA 457 D++ +D + + R++++ + A Sbjct: 434 TDNFVEPNDWEYYLLGRMSELKRNEPA 460 >gi|294140774|ref|YP_003556752.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12] gi|293327243|dbj|BAJ01974.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12] Length = 484 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 125/473 (26%), Positives = 215/473 (45%), Gaps = 34/473 (7%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 L + +++ N SV P + ++ I + K IL + Sbjct: 8 LTKVLACCLALCFVFINFSVKAGGPTGASRDIML--------------IPIFKSRILNLK 53 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V V V +P D+ + +Y+ GK +G N+++ + + + +DI I D+ L Sbjct: 54 QTVHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIMIWDENERLVDVIDIEITHDLNGL 113 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 ++ L F+ + V+ +++ G +Q AVEL++ + + ++ + Sbjct: 114 KLRLHEFLPGEKLGVQTSQGHLLISGQASNLQKMNTAVELAKAYADAASVSKV----NST 169 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 V+N++ + G+ QV L+V IAEV+R++ +Q + I G S S A + Sbjct: 170 VLNMMTVGGDHQVMLEVVIAEVQREVARQFDSKFFIFGQGSKLSGGTAGGGATFDLDPAA 229 Query: 244 DFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 S +G D L ++ + LAEP +TA+SGQSA F SGG+ V Sbjct: 230 AISNRGFFARYINDNLLMNFALDVAKQNGLAKVLAEPNVTALSGQSAEFLSGGEFPIP-V 288 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----------M 348 + G+T++ D+GV + F PTVL G+I L + VSE + + Sbjct: 289 PGTNGSTTIQYRDFGVGVRFVPTVLDSGQINLNLNVIVSEVSNANSVSLSGGGSNATLIV 348 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS R TTVEL G TI ++GL+ D +++ + +P L IPILG LF + F ++ Sbjct: 349 PSIVKRTTSTTVELADGQTIAISGLINDTLRENIDKLPGLGDIPILGQLFTSKSFKSGQS 408 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 E+ I TP LV+P + +S P D + + D + + +++ E SE Sbjct: 409 ELIILVTPRLVRPFNRKHISLPTDDFVLPSDMEFYLLGKMSHKKQDSERSETP 461 >gi|157961834|ref|YP_001501868.1| type II and III secretion system protein [Shewanella pealeana ATCC 700345] gi|157846834|gb|ABV87333.1| type II and III secretion system protein [Shewanella pealeana ATCC 700345] Length = 478 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 120/424 (28%), Positives = 201/424 (47%), Gaps = 19/424 (4%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 I + K +L + V V V +P+ AD+ + +Y+ GK +G NV++ + + Sbjct: 37 IPIFKSRVLMLKGPVHRVSVGNPSIADIKLLPNDELYILGKQLGSTNVMIWDKNEQLARI 96 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 +DI + D+ L+ L +F+ + V+ ++L G +Q AVEL++ + + Sbjct: 97 MDIEVTHDLNGLKTRLYQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAA 156 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 Q + KV+N++ I G+ QV L+V +AEV+R++ +Q + I S S Sbjct: 157 AGGQ----APSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGSNLSGGLV 212 Query: 232 ADFGGKFVSEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 GG G KG+ L ++ + LAEP +TA+SGQSA Sbjct: 213 GGGGGFDPGSIGGIDAKGLFAQYINGDLMMNFALDIAKQNGLAKVLAEPNVTAMSGQSAE 272 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----- 341 F SGG+ V G T++ DYGV + F PTVL G+I L + VSE Sbjct: 273 FLSGGEFPIP-VPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGFA 331 Query: 342 ----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 +PS R TTVEL G TI ++GL+ D +++ + +P L +P+LG L Sbjct: 332 ISGNTSTTLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQL 391 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 F + F ++E+ I TP LV+ +D+S P D + + D + + +++ ++ Sbjct: 392 FTSKSFQSGQSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENSDDS 451 Query: 458 SEVE 461 S+ Sbjct: 452 SDTP 455 >gi|167624205|ref|YP_001674499.1| type II and III secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167354227|gb|ABZ76840.1| type II and III secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 478 Score = 345 bits (886), Expect = 8e-93, Method: Composition-based stats. Identities = 115/424 (27%), Positives = 201/424 (47%), Gaps = 19/424 (4%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 I + K +L + + V V +P+ AD+ + +Y+ GK +G N+++ + + Sbjct: 37 IPIFKSRVLMLNGPIHRVSVGNPSIADIKLLPNDELYILGKQLGSTNIMIWDKNEQLARI 96 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 +DI + D+ L+ L +F+ + V+ ++L G +Q AVEL++ + + Sbjct: 97 MDIEVTHDLNGLKTRLHQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAA 156 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + + KV+N++ I G+ QV L+V +AEV+R++ +Q + I S S Sbjct: 157 A----GDRAPSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFLIFNQGSNLSGGVI 212 Query: 232 A-----DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 D G +G + + L ++ + LAEP +TA+SGQSA Sbjct: 213 GGGGGFDPGSIGGVDGKGLFAQYINGDLMMNFALDVAKQNGLAKVLAEPNVTAMSGQSAE 272 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----- 341 F SGG+ V G T++ DYGV + F PTVL G+I L + VSE Sbjct: 273 FLSGGEFPIP-VPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGFS 331 Query: 342 ----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + +PS R TTVEL G TI ++GL+ D +++ + +P L +P+LG L Sbjct: 332 ISGNTSTSLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQL 391 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 F + F ++E+ I TP LV+ +D+S P D + + D + + +++ + Sbjct: 392 FTSKSFQSGQSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENTDDT 451 Query: 458 SEVE 461 S+ Sbjct: 452 SDTP 455 >gi|84387245|ref|ZP_00990266.1| Flp pilus assembly protein [Vibrio splendidus 12B01] gi|84377892|gb|EAP94754.1| Flp pilus assembly protein [Vibrio splendidus 12B01] Length = 484 Score = 345 bits (885), Expect = 9e-93, Method: Composition-based stats. Identities = 125/452 (27%), Positives = 210/452 (46%), Gaps = 27/452 (5%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 S + GK +++ +K + + V + DP D+V+ ++L GK +G Sbjct: 16 TASVAALQTGKTVTVPHHKSTHVVLSGKAAKVSLGDPEVLDIVILKSNELFLIGKKLGAT 75 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 N++ G+ + +++I + D+ L+ L F+ D I V + ++L G V Q Sbjct: 76 NLMAWDSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQM 135 Query: 158 QRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 A+ ++ET+ S ++ S S++ V+NL++I G QV L+VT+AEV+R ++++ Sbjct: 136 NVAMRIAETYSSGQTADKSNESGSEQADATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195 Query: 213 I-----GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHA 262 FQ S + S G S A G + + G+L F F L Sbjct: 196 FDANFHFFQTSGSDFSWGASSVPAGVLGATPIFNIPTSTDYGILGSFIDSNTLFTFALDV 255 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 ++ + LAEP LTA+SG A F +GG+ ++ +YGV L F PTV Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVP--DEDGITIEYKEYGVGLKFIPTV 313 Query: 323 LSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 LS +I L + +VS +P +P R A +T+EL G TI +AG Sbjct: 314 LSDKKINLNLAVDVSEIANTSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAG 373 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 LL ++++ + +P +PILG LF + + ETE+ I TP L KP+ ++ P D Sbjct: 374 LLSENVRDISNKMPGFGDVPILGQLFNSQEYISGETELVILVTPRLAKPIDRSKVTLPTD 433 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 + +D + + R I P E+ + Q Sbjct: 434 AFVDPNDLEYYLLGRGAYIAEPSESDSEQSQA 465 >gi|218710406|ref|YP_002418027.1| Flp pilus assembly protein [Vibrio splendidus LGP32] gi|218323425|emb|CAV19602.1| Flp pilus assembly protein [Vibrio splendidus LGP32] Length = 484 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 125/455 (27%), Positives = 214/455 (47%), Gaps = 27/455 (5%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 +S + GK +++ +K + + V + DP D+V+ ++L GK +G Sbjct: 16 TLSFAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVMLKSSELFLIGKKLGAT 75 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 N++ G+ + +++I + D+ L+ L F+ D I V + ++L G V Q Sbjct: 76 NLMAWDSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQM 135 Query: 158 QRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 A+ ++ET+ S ++ S S++ V+NL++I G QV L+VT+AEV+R ++++ Sbjct: 136 NVAMRIAETYSSGETADESKESGSEQAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195 Query: 213 I-----GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHA 262 FQ S + S G S A G + + + G+L F F L Sbjct: 196 FDANFHFFQTSGSNISWGASSVPAGVLGATPIFDIPTSTDYGILGSFIDSNTLFTFALDV 255 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 ++ + LAEP LTA+SG A F +GG+ ++ +YGV L F PTV Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVP--DEDGITIEYKEYGVGLKFIPTV 313 Query: 323 LSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 LS +I L + +VS +P +P R A +T+EL G TI +AG Sbjct: 314 LSDKKINLNLAVDVSEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAG 373 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 LL ++++ + +P + +PILG LF + + ETE+ I TP L P+ ++ P D Sbjct: 374 LLSENVRDVSNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLASPIDRSKVTLPTD 433 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 + +D + + R I P E+ + Q +G Sbjct: 434 AFVDPNDLEYYLLGRSAYIAEPSESDSEQSQASQG 468 >gi|78357403|ref|YP_388852.1| type II/III secretion system protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219808|gb|ABB39157.1| type II/III secretion system protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 482 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 125/459 (27%), Positives = 211/459 (45%), Gaps = 50/459 (10%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 F +++ L S+ + A + P + + K ++L+ V+ Sbjct: 17 FPVLAAVLLSAVCAQAAIVPAA-------------------VQLAAGKSVVLETASPVRR 57 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 V V+ P A V+V SP +Y+ G G + L G DI + DIA L+ L Sbjct: 58 VSVAAPEVAQVLVLSPTQVYVTGVKPGGTTLTLWNAAGAVSHVFDIQVSPDIARLKEMLH 117 Query: 129 RFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + + +I V V +++ L G V + A++++ + + KV NL Sbjct: 118 KLLPSEKDIMVMTVGESITLAGTVSSPAHIATAMDMARMY------------APDKVTNL 165 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------GPSKSFAADF 234 + + G Q+ L+V +AE+RR +++++G + +S + Sbjct: 166 MKVGGMHQIMLEVKVAEMRRSVMQRLGIDLAAAWGNSFAFTMLNQLFTLDNQDGTIGVGR 225 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +S + + + L L+ ++ LAEPTL SG+ ASF +GG+ Sbjct: 226 TAAVLSPNNTGVFQAPVGGMTLTGFLDVLKENGLVKVLAEPTLVCRSGEHASFLAGGEIP 285 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPS 350 V G ++ +YGV L FTPTVLSP +I L+++ EVSE VI +N +P Sbjct: 286 IP-VPQGLGTVAIEFKEYGVTLDFTPTVLSPRQISLKVEPEVSELDYANVIQINGFSIPG 344 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+A TTVEL G + +AGLL+D++++ + P L IP+LG LFR+S + + ETE+ Sbjct: 345 ISSRRASTTVELGDGQSFAIAGLLRDEVRETIKKYPGLGDIPVLGTLFRSSSWQKNETEL 404 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 I TP L KP+ M + P D + + + F ++ Sbjct: 405 VIIITPRLAKPLDMTAQTLPTDGFREPTEYEFFIQGKME 443 >gi|323137425|ref|ZP_08072503.1| type II and III secretion system protein [Methylocystis sp. ATCC 49242] gi|322397412|gb|EFX99935.1| type II and III secretion system protein [Methylocystis sp. ATCC 49242] Length = 504 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 166/497 (33%), Positives = 255/497 (51%), Gaps = 37/497 (7%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINI---SDVEIGKGKKISIGLNKVIILQVPVDVQDV 69 I + +VA I A+A + S ++IS+G+ K II+ +P D +V Sbjct: 8 VIGAVWATVAVATATGIAPAHAQGPGVGVESGDNAMLARRISMGVGKSIIVDLPRDATEV 67 Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 +V +P AD +V S R +Y+ G + GQ + + G+Q+ NL+I I RD+ L L+ Sbjct: 68 VVGNPKVADAIVRSARKLYIMGMDAGQTTIFAVDSSGRQVANLEISIGRDVGELAPLLKA 127 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------------------ 171 + SNI V+D ++L G V + ++ RAV++++ F S++ Sbjct: 128 ALPKSNITARTVNDIIILTGTVSSAGEALRAVDIAKGFASRAMGGGAGGGGGVAGQASNS 187 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSF 230 S+ V+N L I GE+QV LKVT+AEV R ++KQ+GF G + S Sbjct: 188 QVGGVGGSADGNVINALTIRGEEQVMLKVTVAEVERKVIKQLGFSAQAGGETILNGSWGK 247 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 ++ S + + L A ER R LAEPT+TA+SG++A G Sbjct: 248 LVQENPFAINPTMSNSALIINGPNNTNATLKAFERYGVSRILAEPTVTAVSGEAAKMLVG 307 Query: 291 GQHLYKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 G+ S T + +T YGV L+F P VLS GRI L + EV+E Sbjct: 308 GEIAVPGSGSCTFFTNGGGQPICSPGITFKSYGVSLNFVPIVLSEGRIHLHLAAEVTEVD 367 Query: 341 IGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +P ++ RK +T+VELPSGG+I AGLL Q G+P L +PILGA Sbjct: 368 LQNTFTYANVAVPGFKTRKNETSVELPSGGSIATAGLLTQKSSQAISGLPGLLNLPILGA 427 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 LFR+ + R ETE+ + TP++V+P++ +D+SRPDD ++ D + + RVN+IY + Sbjct: 428 LFRSRDYLRNETELLVIVTPYIVRPLSAQDVSRPDDGFADASDPQGWLLGRVNRIYSTRN 487 Query: 457 ASEVEGQNYKGAIGFIY 473 ++ QN+KG IGFI+ Sbjct: 488 NPQLM-QNFKGRIGFIH 503 >gi|46580524|ref|YP_011332.1| type II/III secretion system protein [Desulfovibrio vulgaris str. Hildenborough] gi|120602159|ref|YP_966559.1| type II and III secretion system protein [Desulfovibrio vulgaris DP4] gi|46449943|gb|AAS96592.1| type II/III secretion system protein [Desulfovibrio vulgaris str. Hildenborough] gi|120562388|gb|ABM28132.1| type II and III secretion system protein [Desulfovibrio vulgaris DP4] gi|311234263|gb|ADP87117.1| type II and III secretion system protein [Desulfovibrio vulgaris RCH1] Length = 484 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 124/433 (28%), Positives = 204/433 (47%), Gaps = 31/433 (7%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 A + + ++ + K ++ V + ++D A VVV SP+ +Y+ GK Sbjct: 28 AALTVPTFCGAASSELQVATGKSSVVSTSRPVGRLAIADEAIAGVVVLSPQQVYVTGKKA 87 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRT 153 G + L G + D+ + DIA L+ L R + N I V V+DTV L G VR+ Sbjct: 88 GTTTLTLWDGGGAVIGVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGVNDTVTLAGTVRS 147 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 A++++ + + KV NL+ + G QV L+V +AE+RR++++++ Sbjct: 148 AASMTTAMDMARLY------------APDKVTNLMQVGGVHQVMLEVKVAEMRRNVMERL 195 Query: 214 GFQ----HSITGSSSGPSKSFA---------ADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 G ++ F A G +S + + + + S L Sbjct: 196 GIDLTYAWRGDFIFGMLNQLFTLDSQKGVVDAGPSGAVLSPNVNGAFRITSGQVSIMGFL 255 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 L++ ++ LAEPTL SG+ A F +GG+ V G ++ ++GV L F P Sbjct: 256 DVLKQNGLVKVLAEPTLVCRSGEKAEFLAGGEIPIP-VPQGLGTVAIEYKEFGVTLQFLP 314 Query: 321 TVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TV+ GRI +++ EVSE V+ + +P+ R+A TTVEL G + +AGLL+D Sbjct: 315 TVVGDGRISMKVAPEVSELDYTNVVQIQGFTIPAITSRRASTTVELADGQSFAIAGLLRD 374 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 D++Q P+L +P+LG LFR+S + + ETE+ I TP L KP+ P D Y Sbjct: 375 DVRQAVNKYPVLGDMPVLGTLFRSSNWQKNETELVIIVTPHLAKPLEANATRLPTDAYRE 434 Query: 437 EDDAKAFFFNRVN 449 + F R+ Sbjct: 435 PSAFEYFILGRME 447 >gi|167589424|ref|ZP_02381812.1| type II and III secretion system protein [Burkholderia ubonensis Bu] Length = 460 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 139/475 (29%), Positives = 226/475 (47%), Gaps = 37/475 (7%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 I L+ A P + A A + G +++ K +L +P + V+D Sbjct: 8 IALWCMACVAA--PGVAFAQRASV------PDAGAPLTLAAGKGDLLSLPEPAATMFVAD 59 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 P+ AD+ V SPRT+++FGK G +I +G + + +L ++++ D L+ L Sbjct: 60 PSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQADTPSLQRVLDSRFPQ 119 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 ++V ++++ G V + D+ ++ +L +K++N L ++ Sbjct: 120 WQLKVSGAPGSLMVSGKVPSGADADAVMQSLAPYLQDK----------EKLVNRLTLSRP 169 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAADFGGKFVSEGGDFS 246 QV L+V + EV R+I +Q+G S G S F +S G FS Sbjct: 170 IQVNLRVRVTEVSRNITQQLGINWSGLGGSGNFIGGLFNGRTLFDPTTSLFNLSPTGAFS 229 Query: 247 VKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--ST 302 V G R+S + VL AL++ I LAEP LTA+SG++ASF +GG+ S +T Sbjct: 230 VLGGFRAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGETASFLAGGEIPIPVAQSGTTT 289 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD--MPSYRVRKADT 358 GA +V +GV L FTPTVL+ RI L+++ EVS +P V G +P+ VR+ +T Sbjct: 290 GAITVEFKPFGVSLDFTPTVLAENRISLKVRPEVSEIDPTNSVTTGGVKVPALSVRRVET 349 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TVEL SG + + GLL+ + IP L ++P+LG LF + F +TE+ + TP++ Sbjct: 350 TVELSSGQSFAIGGLLQSQTSDVVSQIPGLGRLPVLGRLFSSKNFQDNKTEVVVIVTPYI 409 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 V+P L + D + F R + + GA GF+Y Sbjct: 410 VQPAGPGQLEQAIDTVARPSSDLEFAVQRNLGLDLLSG----DTPRLVGAAGFVY 460 >gi|78062906|ref|YP_372814.1| type II and III secretion system protein [Burkholderia sp. 383] gi|77970791|gb|ABB12170.1| type II and III secretion system protein [Burkholderia sp. 383] Length = 460 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 136/458 (29%), Positives = 215/458 (46%), Gaps = 29/458 (6%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 A+ + G +SI K +L +P + V+DP AD+ V SPRT+++F Sbjct: 17 VASGSAFAQGARAPDAGAALSIATGKGELLSLPEPATAMFVADPAIADIQVPSPRTVFVF 76 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 GK G +I +G + + +L ++++ D A L+ L + V ++++ G Sbjct: 77 GKKAGTTTLIALGANHRPILRKTVIVQVDTASLQGVLDSRFPQLKLSVSGAPGSLMVSGK 136 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V + D+ ++ +L +K++N L ++ QV L+V + EV R+I Sbjct: 137 VPSAADADAVMQSLTPYLHDK----------EKIVNRLTLSRPIQVNLRVRVTEVSRNIT 186 Query: 211 KQIGFQHSITGSSSGPSKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLH 261 +Q+G S G + F G +S G FSV G R+S + VL Sbjct: 187 QQLGINWSSLGGAGNFVGGLFNGRTLFDPTNGLFNLSPTGAFSVLGGFRAGRWSIDVVLD 246 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFT 319 AL++ I LAEP LTA+SG++ASF +GG+ SSTGA +V +GV L FT Sbjct: 247 ALDQEGLITMLAEPNLTAMSGETASFLAGGEIPIPVAQAGSSTGAITVEFKPFGVSLDFT 306 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLK 375 PTVL+ RI L+++ EVSE + +P VR+ DTTVEL SG + + GLL+ Sbjct: 307 PTVLADNRISLKVRPEVSEIDTNNSVTTGGVKVPGLTVRRVDTTVELSSGQSFAIGGLLQ 366 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 IP L ++PI+G LF + F +TE+ + TP++V+P L + D + Sbjct: 367 SQTADTVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQAIDTVA 426 Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F + + GA GF+Y Sbjct: 427 RPSSDLEFAVQHNLGLDLLSG----DTPRLVGAAGFVY 460 >gi|307294424|ref|ZP_07574268.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] gi|306880575|gb|EFN11792.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] Length = 503 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 140/479 (29%), Positives = 226/479 (47%), Gaps = 47/479 (9%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 ++ + S+ S+ S+ LP +A A +N+S+ ++ + LNK +L Sbjct: 5 KSLPMLASLLTLSAGASL--LPIQAQAQIASLNLSNAN--HAGQLDVPLNKSQVLTADRP 60 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 LV + ADV+ + R++Y+ GK +G ++ L + +D+ + D+ L+ Sbjct: 61 FAKALVGNAEIADVLPMTNRSVYVLGKKMGTTSLTLYDSRNIMIAVVDVAVGPDVVTLKR 120 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 L + I + +D+VVL G + + RAV++++T+ KV+ Sbjct: 121 QLSDLLPGQPIGARISNDSVVLTGTLSSAAAVDRAVQIAKTYAG------------DKVV 168 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---------GPSKSFAADFGG 236 N++++ QV L+V +E+ R KQ G + S S + +D G Sbjct: 169 NMMSVGASQQVMLEVRFSEMSRGAAKQFGINTAFLSDSGKVVGGIGNAAQSSAILSDTNG 228 Query: 237 K-------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + + G + + + T L ALER + TLAEPTL A+SG++ASF + Sbjct: 229 RPIVDLSKILDSFGIGAANFSIGSLNITTALDALERKGVVTTLAEPTLVALSGETASFLA 288 Query: 290 GGQHLYKTVSSSTG-----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GG+ S++G A ++ +GV L FTPTVL G I L ++ EVS Sbjct: 289 GGEFPIPVAQSNSGGGGGGGGNSGNAITIEFKPFGVSLGFTPTVLDDGIINLVVEPEVSS 348 Query: 339 P----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + VN +P + R+A TT+EL G + LAGLL+ D Q P+L IPI+ Sbjct: 349 IDPSASVTVNGLTIPGLQTRRASTTLELRDGQSFALAGLLRKDFQDTVRQFPILGSIPII 408 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 GALFR+S F + ETE+ I TP LVKP+ D++ P D + F R +K G Sbjct: 409 GALFRSSGFQKSETELVIIVTPRLVKPMRAEDVALPTDRVKPPHELDLFLMGRTDKAVG 467 >gi|212635453|ref|YP_002311978.1| Flp pilus assembly protein [Shewanella piezotolerans WP3] gi|212556937|gb|ACJ29391.1| Flp pilus assembly protein [Shewanella piezotolerans WP3] Length = 479 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 117/425 (27%), Positives = 198/425 (46%), Gaps = 20/425 (4%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 I + K +L + V V V +P+ AD+ + +Y+ GK +G N+++ D + Sbjct: 37 IPIFKSRVLMLEGPVHRVSVGNPSIADIKLLPNDELYILGKQLGSTNIMIWDKDEQLSKI 96 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 +DI + D+ L+ L F+ + V+ ++L G +Q AVEL++ + + Sbjct: 97 MDIEVTHDLNGLKTRLHEFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAA 156 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------SSG 225 ++ +V+N++ I G+ QV L+V +AEV+R++ +Q + I Sbjct: 157 A----GGTAPSRVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGDHLAGGVI 212 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 GG +G + V L ++ + LAEP +TA+SGQSA Sbjct: 213 GGGGGGFAPGGIGGVDGKGLFAQYVNGDLLMNFALDVAKQNGLAKVLAEPNVTAMSGQSA 272 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---- 341 F SGG+ V G T+V DYGV + F PTVL G+I L + VSE Sbjct: 273 EFLSGGEFPIP-VPGENGNTTVEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGF 331 Query: 342 -----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +PS R TTVEL G TI ++GL+ D +++ + +P L +P+LG Sbjct: 332 TISGNTSTSLVVPSLTKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQ 391 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 LF + F ++E+ I TP LV+P D+S P D + + D + + +++ Sbjct: 392 LFTSKSFQNGQSELVILVTPRLVRPFNRNDISLPTDGFVLPSDVEFYLLGKLSHKEKSDT 451 Query: 457 ASEVE 461 S++ Sbjct: 452 NSDMP 456 >gi|323499921|ref|ZP_08104880.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326] gi|323315162|gb|EGA68214.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326] Length = 487 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 119/453 (26%), Positives = 209/453 (46%), Gaps = 32/453 (7%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 GK + + +K + + + V + DP D+V+ ++L GK +G N++ Sbjct: 21 ATQSGKIVKVPHHKSTHVTLAAKAKRVSLGDPEVLDIVMLKSDEVFLIGKKLGSTNLMAW 80 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G+ + +++I + D+ L+ L F+ + I V + ++L G + +A+ Sbjct: 81 DSRGRLIESINIEVTHDLNSLKAKLYEFLPNEEIEVHSAQNRLILSGQISNQAAMNKALR 140 Query: 163 LSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 ++ET+ + ++ S S++ V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 141 VAETYSAGQEADKENRSLSEQVQKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKFDSNF 200 Query: 218 SI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH-------ALE--- 264 G+ S S A G F+ G+ + T + AL+ Sbjct: 201 HFFESNGNFSWGGTSAGAIIDDVNGGIGPIFNAPGIDNTGFLGTFIDGDTLFTFALDIAK 260 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + + LAEP LTA+SG A F +GG+ ++ +YGV L F PTVLS Sbjct: 261 QNGSAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DDDGITIEYKEYGVGLKFIPTVLS 318 Query: 325 PGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 I L + +VSE +P R A +T+EL G TI +AGLL Sbjct: 319 DKHINLNLAIDVSEIANSATLTLNPGGTNGTYVIPPITRRSASSTLELADGQTIGIAGLL 378 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++++ + G+P S IP+LG +F + + ETE+ I TP L KP+ +S P D + Sbjct: 379 SENVRDVVSGVPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRSKVSLPTDSF 438 Query: 435 SVEDDAKAFFFNRVNKIY--GPKEASEVEGQNY 465 +D + + R I G +++E + N+ Sbjct: 439 VEPNDFEYYLLGRGAYIAPTGKSKSNESQESNF 471 >gi|86147467|ref|ZP_01065779.1| Flp pilus assembly protein [Vibrio sp. MED222] gi|85834760|gb|EAQ52906.1| Flp pilus assembly protein [Vibrio sp. MED222] Length = 485 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 123/447 (27%), Positives = 210/447 (46%), Gaps = 27/447 (6%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 S + GK +++ +K + + V + DP D+V+ ++L GK +G Sbjct: 16 TASVAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVILKSNEVFLIGKKLGAT 75 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 N++ G+ + +++I + D+ L+ L F+ D I V + ++L G + Q Sbjct: 76 NLMAWDSRGQLIESINIEVTHDLNSLKSKLYEFLPDETIEVHSAQNRLLLSGQISNQQKM 135 Query: 158 QRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 A+ ++ET+ + + S S++ V+NL++I G QV L+VT+AEV+R ++++ Sbjct: 136 NVAMRIAETYAAGQAADDSKESGSEQVAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195 Query: 213 I-----GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHA 262 FQ S + S G S A G V + + G+L F F L Sbjct: 196 FDANFHFFQTSGSNFSWGASSVPAGALGATPVFDIPTSTDYGILGSFIDSNTLFTFALDV 255 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 ++ + LAEP LTA+SG A F +GG+ ++ +YGV L F PTV Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVP--DEDGITIEYKEYGVGLKFIPTV 313 Query: 323 LSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 LS +I L + +VS +P +P R A +T+EL G TI +AG Sbjct: 314 LSDKKINLNLAVDVSEIANSSSLTIDPGSTNATYFIPPITRRSASSTLELADGQTIGIAG 373 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 LL ++++ + +P + +PILG LF + + ETE+ I TP L KPV ++ P D Sbjct: 374 LLSENVRDVSNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLAKPVDRSKVTLPTD 433 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASE 459 + +D + + R I P ++ + Sbjct: 434 AFVDPNDLEYYLLGRSAYIAEPSDSED 460 >gi|328953626|ref|YP_004370960.1| type II and III secretion system protein [Desulfobacca acetoxidans DSM 11109] gi|328453950|gb|AEB09779.1| type II and III secretion system protein [Desulfobacca acetoxidans DSM 11109] Length = 503 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 137/493 (27%), Positives = 216/493 (43%), Gaps = 46/493 (9%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 + ++ L + +V P + A A + + D ++ + ++ +G + +L+ + + Sbjct: 21 LAAMVLILGSAAVYSPPSVLAAQALLERVKDEDLEQVIRLRVG--RSKVLRTSFTISRIS 78 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V+DP AD+++ S R +Y+ G G N+ L G + + + +E D++ L+ L + Sbjct: 79 VADPEVADIIMISEREVYINGNAPGVTNISLWGK--RSFSSAKVTVEADVSLLKEKLFKV 136 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + I VE DTVVL G V + A+ L+ F + KV+NLL+I Sbjct: 137 LPKEKIAVEAAEDTVVLSGEVSGPVAQETAISLATAF---------SGGKKDKVVNLLHI 187 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235 G QV + V +AE+ R + K++G + + + + Sbjct: 188 GGVQQVMVAVRVAEINRSVGKEMGINFAYSNKAGNFGATLLNSLSILKNIDRNLDSVTAP 247 Query: 236 GKFVSEGG-----------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G V+ G + G+ F + L++ R LAEP L SGQ Sbjct: 248 GVLVNPGVTTSSQQFSSSVNAVFGGLYGSFFWTAFFDVLKKNGLGRILAEPNLVTTSGQE 307 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------E 338 ASF +GG+ V S G TS+ +GV L FTPTVL +I LRI EVS + Sbjct: 308 ASFLAGGEFPIP-VPSGLGTTSIDYKKFGVGLVFTPTVLDNDKIALRINPEVSELDFSSQ 366 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + VN +P +VR+ T VE+ G T+ +AGLL D + + PLL +PILG LF Sbjct: 367 TTVVVNNFIVPGLKVRRTTTQVEMKDGQTLAIAGLLSDQHRNVVNKYPLLGDLPILGVLF 426 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 R+S F + ETE+ I TP LVK P D Y D + + R + Sbjct: 427 RSSSFQKSETELVILVTPHLVKSQPPGPHRLPTDKYIEPTDLEFYLLGRSEGRDKKPQPP 486 Query: 459 EVEGQNYKGAIGF 471 GF Sbjct: 487 AASPAREITPPGF 499 >gi|260771478|ref|ZP_05880403.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio furnissii CIP 102972] gi|260613604|gb|EEX38798.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio furnissii CIP 102972] gi|315181060|gb|ADT87974.1| Flp pilus assembly protein, secretin CpaC [Vibrio furnissii NCTC 11218] Length = 489 Score = 339 bits (869), Expect = 7e-91, Method: Composition-based stats. Identities = 117/447 (26%), Positives = 203/447 (45%), Gaps = 30/447 (6%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 GK +++ +K +++ V + DP D+V+ ++L GK +G N++ Sbjct: 24 SGKVVTVPHHKSTYVKLQGAASRVSLGDPEVLDIVMLKADELFLIGKRLGSTNLMAWDRR 83 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G+ + +++I + D+ L+ L F+ + I V + ++L G V + + A+ L+E Sbjct: 84 GQLLESINIEVTHDVNSLKAKLYEFLPNETISVHSAQNRLILSGQVSSQEKMNLALRLAE 143 Query: 166 TFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 T+ S ++ +S +K+ V+NL++I G QV ++VT+AEV+R ++++ Sbjct: 144 TYASGDTADKATDSRNKEAEKTGVVNLMSIGGAQQVMIEVTVAEVQRSLVRRFDSNFHFF 203 Query: 221 GSSSGPSKSFAADFG--------GKFVSEGGDFSVKGVLDRF-----SFETVLHALERAT 267 + S + G V G+L F F L + Sbjct: 204 EGNGKFSWGATSAGGYIDDITGVAGPVFNAPTIDSTGLLSTFIDGDTLFTLALDVAKENG 263 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + LAEP LTA+SG A F +GG+ + ++ +YGV L F PTVLS + Sbjct: 264 VAKVLAEPNLTALSGAKAEFLAGGEFPIPVPNRD--GITIEYKEYGVGLKFIPTVLSDKK 321 Query: 328 IGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 I L + +VSE A +P R A +T+EL G TI +AGLL ++ Sbjct: 322 INLNLAVDVSEIASSTTLTVSPSGTNAAYYIPPITRRSAASTLELADGQTIGIAGLLSEN 381 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 ++ P + IP+LG LF + + ETE+ I TP L KP+ + P D + Sbjct: 382 VRDSVSKFPGIGDIPVLGQLFNSQEYVSGETELVILVTPRLAKPIDRSKVVLPTDAFVEP 441 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQN 464 D K + + I GP++ + + Sbjct: 442 TDLKYYLLGQGAYIAGPRDVKRTKASD 468 >gi|258621447|ref|ZP_05716481.1| Flp pilus assembly protein [Vibrio mimicus VM573] gi|262171232|ref|ZP_06038910.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus MB-451] gi|258586835|gb|EEW11550.1| Flp pilus assembly protein [Vibrio mimicus VM573] gi|261892308|gb|EEY38294.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus MB-451] Length = 488 Score = 338 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 119/447 (26%), Positives = 199/447 (44%), Gaps = 30/447 (6%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + I GK +++ +K + + + V + DP D+V+ ++L G+ +G N Sbjct: 17 TAQGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTN 76 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G + +L++ + D+ L+ L + D I+V + ++L GMV + Sbjct: 77 LMAWDSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMN 136 Query: 159 RAVELSETFLSQSGRNQYANSSS-----KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 A+ ++ET+ + ++ S + V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196 Query: 214 GFQH-----SITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGVLDRF-----SFETVL 260 + S G S D G V + G+L F F L Sbjct: 197 DSNFHFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFAL 256 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 + + LAEP LTA+SG A F +GG+ ++ +YGV L F P Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DKDGVTIEYKEYGVGLKFIP 314 Query: 321 TVLSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 T+LS RI L + +VS P + +P R A +T+EL G TI + Sbjct: 315 TILSDKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGI 374 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL ++++ + +P IP+LG LFR+ + ETE+ I TP L KPV ++ P Sbjct: 375 AGLLSENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLP 434 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEA 457 D + D K + I A Sbjct: 435 TDAFVEPSDFKYYLLGEGAYIAESPVA 461 >gi|258627504|ref|ZP_05722285.1| Flp pilus assembly protein [Vibrio mimicus VM603] gi|258580310|gb|EEW05278.1| Flp pilus assembly protein [Vibrio mimicus VM603] Length = 488 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 119/447 (26%), Positives = 199/447 (44%), Gaps = 30/447 (6%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + I GK +++ +K + + + V + DP D+V+ ++L G+ +G N Sbjct: 17 TAQGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTN 76 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G + +L++ + D+ L+ L + D I+V + ++L GMV + Sbjct: 77 LMAWDSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMN 136 Query: 159 RAVELSETFLSQSGRNQYANSSS-----KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 A+ ++ET+ + ++ S + V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196 Query: 214 GFQH-----SITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGVLDRF-----SFETVL 260 + S G S D G V + G+L F F L Sbjct: 197 DSNFHFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFAL 256 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 + + LAEP LTA+SG A F +GG+ ++ +YGV L F P Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DKDGVTIEYKEYGVGLKFIP 314 Query: 321 TVLSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 T+LS RI L + +VS P + +P R A +T+EL G TI + Sbjct: 315 TILSDKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGI 374 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL ++++ + +P IP+LG LFR+ + ETE+ I TP L KPV ++ P Sbjct: 375 AGLLSENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLP 434 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEA 457 D + D K + I A Sbjct: 435 TDAFVEPSDFKYYLLGEGAYIAESPVA 461 >gi|262165919|ref|ZP_06033656.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus VM223] gi|262025635|gb|EEY44303.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus VM223] Length = 488 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 119/443 (26%), Positives = 198/443 (44%), Gaps = 30/443 (6%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 I GK +++ +K + + + V + DP D+V+ ++L G+ +G N++ Sbjct: 21 AIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTNLMAW 80 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G + +L++ + D+ L+ L + D I+V + ++L GMV + A+ Sbjct: 81 DSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMNIALR 140 Query: 163 LSETFLSQSGRNQYANSSS-----KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 ++ET+ + ++ S + V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 141 VAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNF 200 Query: 218 -----SITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGVLDRF-----SFETVLHALE 264 + S G S D G V + G+L F F L + Sbjct: 201 HFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFALDIAK 260 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + LAEP LTA+SG A F +GG+ ++ +YGV L F PT+LS Sbjct: 261 ENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DKDGVTIEYKEYGVGLKFIPTILS 318 Query: 325 PGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 RI L + +VS P + +P R A +T+EL G TI +AGLL Sbjct: 319 DKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGIAGLL 378 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++++ + +P IP+LG LFR+ + ETE+ I TP L KPV ++ P D + Sbjct: 379 SENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLPTDAF 438 Query: 435 SVEDDAKAFFFNRVNKIYGPKEA 457 D K + I A Sbjct: 439 VEPSDFKYYLLGEGAYIAESPVA 461 >gi|163751744|ref|ZP_02158962.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica KT99] gi|161328396|gb|EDP99555.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica KT99] Length = 484 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 120/429 (27%), Positives = 212/429 (49%), Gaps = 24/429 (5%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + I + K I+ + V V V +P D+ + +Y+ GK +G N+++ + + + Sbjct: 40 MQIPIFKSRIINLKHAVHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIMIWDENERLV 99 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 +DI I D+ L++ L F+ + V+ +++ G ++ AVEL++ + + Sbjct: 100 DVIDIEITHDLNGLKLRLHEFLPGEKLGVQTSQGHLLISGQASNLKKMNTAVELAKAYAA 159 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------TGS 222 + ++ ++ V+N++ + G+ QV L+V IAEV+R++ +Q + I +G Sbjct: 160 AASVSKVKST----VLNMMTVGGDHQVMLEVVIAEVQREVARQFDSKFFIFNKGSKMSGG 215 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 +G SF D S G F + + D L ++ + LAEPT+TA+SG Sbjct: 216 VAGRGGSFDLDPAAAIDSRG--FFARYLNDNLMMNFALDVAKQNGLAKILAEPTVTALSG 273 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-- 340 QSA F SGG+ V G+T++ D+GV + F PTVL G+I L + VSE Sbjct: 274 QSAEFLSGGEFPIP-VPGINGSTTIQYRDFGVGVRFVPTVLDSGQINLNLNVIVSEISNV 332 Query: 341 --IGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + ++ G +PS R TTVEL G TI ++GL+ D +++ + +P L IP Sbjct: 333 HSVSLSGGGSNATLIVPSIVKRTTSTTVELADGQTIAISGLISDTLRENIDKLPGLGDIP 392 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 ILG LF + F ++E+ I TP LV+P + +S P D + + D + + +++ Sbjct: 393 ILGQLFTSKSFKSGQSELVILVTPRLVRPFNRKHISLPTDDFVLPSDMEFYLLGKMSHKK 452 Query: 453 GPKEASEVE 461 + S Sbjct: 453 QNSQRSGTP 461 >gi|300021854|ref|YP_003754465.1| type II and III secretion system protein [Hyphomicrobium denitrificans ATCC 51888] gi|299523675|gb|ADJ22144.1| type II and III secretion system protein [Hyphomicrobium denitrificans ATCC 51888] Length = 550 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 184/538 (34%), Positives = 268/538 (49%), Gaps = 77/538 (14%) Query: 10 TMMSIFLFSSNPSVAKL--------------PPIKEANAAVINISDVE-IGKGKKISIGL 54 + + L S+ P+ A+ P + +++ IS+ E + K I IGL Sbjct: 17 MVFAAVLTSAAPTSAQSRAADRLSVRADRGDPEFSKNTQSIVRISESEGLPVRKSIKIGL 76 Query: 55 NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114 K ++++ P V+DV+ S+P D VV S ++L GK GQ+N + G+Q+ +++ Sbjct: 77 GKSVLIEFPNGVRDVMASNPAVVDAVVLSSNRVFLLGKAPGQSNAFFFSNKGEQLALIEL 136 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 ++++ LEM LRR I S I+VE ++ T +L G V++ DS RA ++ F+SQ N Sbjct: 137 NVDQEGDGLEMLLRRVIPGSEIKVETLNQTAILTGRVKSPSDSARASRIAAQFMSQMIAN 196 Query: 175 QYANSS--------------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 +N S K V+NLL + E+QV LKVT+AEV+R +LKQ+G Sbjct: 197 WASNVSLTSSGSGQQNKAGEVKDADDVKSVINLLTVEAEEQVMLKVTVAEVKRTLLKQLG 256 Query: 215 FQHSITGSSS--------------------GPSKSFAADFGGKFV------------SEG 242 SS G +F Sbjct: 257 INLGGVLSSGSFSTTLLTENAFPISTAQGLGSLPTFGVGTAASAACAVGQICAFNPGPAT 316 Query: 243 GDFSVKGVLD-----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G F G++ R + ++ + ALER I+TLAEP LTAISG+ A F +GG+ Y T Sbjct: 317 GAFGNSGLVSGWGNSRNNIQSAVRALERDGLIKTLAEPNLTAISGEPAEFLAGGEVPYVT 376 Query: 298 -VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 V + TG ++V +GV L FTP VL+ GRI L+I T VS+ V P + R+A Sbjct: 377 GVDTQTGVSAVAFKKFGVQLAFTPVVLTEGRISLKIDTSVSDISQYVAGN--PVFDTRQA 434 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T VELPSGG++ LAGL+ QQ +G+P IPILG LFR+ F +E+E+ + TP Sbjct: 435 KTVVELPSGGSLALAGLISTKTQQNIDGLPGAKDIPILGTLFRSRDFQNDESELVVIVTP 494 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +LV+PVA + LS P D D KA F +N+IYG E G KG GFI + Sbjct: 495 YLVQPVARQQLSAPTDGLYPATDLKADFLGHLNRIYGKSEVQPSGG--LKGDYGFIVE 550 >gi|303248302|ref|ZP_07334564.1| type II and III secretion system protein [Desulfovibrio fructosovorans JJ] gi|302490327|gb|EFL50239.1| type II and III secretion system protein [Desulfovibrio fructosovorans JJ] Length = 528 Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats. Identities = 135/492 (27%), Positives = 225/492 (45%), Gaps = 75/492 (15%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 AA + V + ++S+ + K +ILQ DV V V+ P AD V+ SPR +Y+ G+ Sbjct: 28 AAPGRMGTVAVRTAPRLSLTIGKSVILQSDADVSRVSVAQPEIADFVLLSPRQIYVTGRA 87 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVR 152 G N+ L K D+ + DI+ L+ L + + I V D++ L G VR Sbjct: 88 PGITNLTLWDKGDKVRAVYDLDVAPDISRLKKMLHDVMPGESGIEVMSSQDSIALSGTVR 147 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + ++A+ L+E + + KKV+NLL++ G QV L+V +AE+ + ++ + Sbjct: 148 DSANMKKALALAEVY------------APKKVLNLLSVGGVQQVMLEVRVAEMSKSLVNR 195 Query: 213 IGFQHSITGSSS------GPSKSFAADFGGKF-----------VSEGGDFSVK------- 248 +G + G + G S A+ + + GD + Sbjct: 196 MGINLNAVGDGNFAYTLIGSLSSVASGMFDTYYPQNAYQYITMTANSGDGNSSFDSTPIQ 255 Query: 249 ------------------------------GVLDRFSFETVLHALERATAIRTLAEPTLT 278 G + V+ L++ ++ LAEP L Sbjct: 256 LAYREFNQPSSKATMSFNQGTAVARWNTNFGGAGNTAMTAVVDMLKQNGLVKILAEPNLV 315 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 ++GQSA F +GGQ VSS G TS+ +GV L+FTPTV++ RI L++ EVS Sbjct: 316 CLNGQSADFLAGGQIPVP-VSSGLGTTSIEWKKFGVQLNFTPTVVAGDRINLKVNPEVSN 374 Query: 339 P----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 I + +P+ R+ TT+EL +G T +AG+L + + + P+L IP+L Sbjct: 375 LDYTRAITLLGSTVPAINTRQTSTTIELKNGQTFAIAGMLNEQSRDSMDKYPVLGDIPVL 434 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 GALF++S++ +++TE+ I T LVKP+ + +S P D DD + F + Sbjct: 435 GALFKSSQYQKDQTELVILITAHLVKPLDKKAISLPTDSAHEPDDLEFFLGISRD---AK 491 Query: 455 KEASEVEGQNYK 466 +A +GQ+ Sbjct: 492 SDAGAAQGQSLS 503 >gi|323491532|ref|ZP_08096711.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546] gi|323314108|gb|EGA67193.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546] Length = 485 Score = 336 bits (861), Expect = 6e-90, Method: Composition-based stats. Identities = 116/448 (25%), Positives = 206/448 (45%), Gaps = 27/448 (6%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 ++ GK + + +K + + + V + DP D+V+ ++L GK +G N Sbjct: 17 VTYAASQSGKVVKVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDELFLIGKKLGSTN 76 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G+ + +++I + D+ L+ L F+ + +I V + ++L G + Sbjct: 77 LMAWDSRGQLIESINIEVTHDLNSLKAKLFEFLPNESIEVHSAQNRLILSGQISNQAAMN 136 Query: 159 RAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 A+ ++ET+ + ++ S SK+ V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 137 IALRVAETYSAGRQADKENKSLSKQAEKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKF 196 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVS--------EGGDFSVKGVL--DRFSFETVLHAL 263 + SS K G GD+ + G F L Sbjct: 197 DANFAFFQSSGSKFKWGGTSTGATVPGATPIFEAPSTGDYGILGSFIDGNTLFTFALDVA 256 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + + LAEP LTA+SG A F +GG+ ++ +YGV L F PTVL Sbjct: 257 RQNGTAKVLAEPNLTALSGSKAEFLAGGEFPIPVP--DEDGITIEYKEYGVGLKFIPTVL 314 Query: 324 SPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 S +I L + +VSE P + +P R A +T+EL G TI +AGL Sbjct: 315 SDKKINLNLAVDVSEIANSSSLTLSPGSTNSTYIIPPITRRSASSTLELADGQTIGIAGL 374 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L ++++ + +P S IPILG +F + + ETE+ I TP L +P+ ++ P D Sbjct: 375 LSENVRDVANEMPGFSDIPILGQMFNSQEYVSGETELVILVTPRLAQPIDRNKVTLPTDS 434 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + +D + + R + + +AS+ + Sbjct: 435 FVEPNDFEYYLLGRGSYLAPASQASQAK 462 >gi|172062959|ref|YP_001810610.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] gi|171995476|gb|ACB66394.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] Length = 460 Score = 335 bits (860), Expect = 7e-90, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 224/488 (45%), Gaps = 43/488 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M + R + + ++A+ +A G +SI K +L Sbjct: 1 MVRMVRWIAVWCLACIVAPGVALAQRAHAADA--------------GAPLSIATGKGEML 46 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + + V+DP+ AD+ V SPRT+++FGK G +I +G + + +L ++++ D Sbjct: 47 SLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQVDT 106 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 A L+ L + V ++++ G V + D+ ++ +L+ Sbjct: 107 ASLQTVLDSRFPQLKLAVSGAPGSLMVSGKVPSAADADAVMQSLTPYLNDK--------- 157 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--- 237 ++++N L ++ QV L+V + EV R++ +Q+G S G++ Sbjct: 158 -ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLGINWSSLGAAGNFIGGLFNGRTLMDPT 216 Query: 238 ----FVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 +S G +SV G R+S + VL AL++ I LAEP LTA+SGQ+ASF +GG Sbjct: 217 TKLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGQTASFLAGG 276 Query: 292 QHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345 + ++TGA +V +GV L FTPTVL+ RI L+++ EVSE + Sbjct: 277 EIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVLADNRISLKVRPEVSEVDANNSVTTGG 336 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P VR+ +TTVEL SG + + GLL+ IP L ++PI+G LF + F Sbjct: 337 VTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTANTVSQIPGLGRLPIIGRLFSSKNFQD 396 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 +TE+ + TP++V+P L + D + F R + + Sbjct: 397 NKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSDLEFAVQRNLGLDLMSGETPRP---- 452 Query: 466 KGAIGFIY 473 GA GF+Y Sbjct: 453 VGAAGFVY 460 >gi|115358171|ref|YP_775309.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] gi|115283459|gb|ABI88975.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] Length = 460 Score = 335 bits (860), Expect = 8e-90, Method: Composition-based stats. Identities = 128/458 (27%), Positives = 215/458 (46%), Gaps = 29/458 (6%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 A + + G +SI K +L + + V+DP+ AD+ V SPRT+++F Sbjct: 17 VAPGVALAQRAHAVEAGATLSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVF 76 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 GK G +I +G + + +L ++++ D L+ L + V ++++ G Sbjct: 77 GKKAGTTTLIALGANHRPILRKTVIVQVDTVSLQAVLDSRFPQLKLSVSGAPGSLMVSGK 136 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V + D+ ++ +L+ ++++N L ++ QV L+V + EV R++ Sbjct: 137 VPSAADADAVMQSLAPYLNDK----------ERIVNRLTLSRPIQVNLRVRVTEVSRNVT 186 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGK-------FVSEGGDFSVKGVL--DRFSFETVLH 261 +Q+G S G++ +S G +SV G R+S + VL Sbjct: 187 QQLGINWSSLGAAGNFIGGLFNGRTLMDPTNRLFNLSPTGAYSVLGGFHTGRWSIDVVLD 246 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFT 319 AL++ I LAEP LTA+SGQ+ASF +GG+ ++TGA +V +GV L FT Sbjct: 247 ALDQEGLITMLAEPNLTAMSGQTASFLAGGEIPIPVAQAGNTTGAITVEFKPFGVSLDFT 306 Query: 320 PTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PTVL+ RI L+++ EVSE + +P VR+ +TTVEL SG + + GLL+ Sbjct: 307 PTVLADNRISLKVRPEVSEVDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQ 366 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 IP L ++PI+G LF + F +TE+ + TP++V+P L + D + Sbjct: 367 SQTANTVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVA 426 Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F R + + GA GF+Y Sbjct: 427 RPSSDLEFAVQRNLGLDLMSGETPRP----VGAAGFVY 460 >gi|254506750|ref|ZP_05118890.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus 16] gi|219550331|gb|EED27316.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus 16] Length = 487 Score = 335 bits (860), Expect = 8e-90, Method: Composition-based stats. Identities = 119/455 (26%), Positives = 212/455 (46%), Gaps = 34/455 (7%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 + GK + + +K + + + V + DP D+V+ ++L GK +G N+ Sbjct: 18 ATAATQSGKIVKVPHHKSTHVTLAGKAKRVSLGDPEVLDIVMLKSDEVFLIGKKLGSTNL 77 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + G+ + +++I + D+ L+ L F+ + I+V + ++L G + + Sbjct: 78 MAWDRRGQLIESINIEVTHDLNSLKAKLYEFLPNEEIKVHSAQNRLILSGQISSQSAMNI 137 Query: 160 AVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 A+ ++ET+ + ++ S S++ V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 138 ALRVAETYSAGQEVDKENKSLSEQVQKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRK-- 195 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFETVLH-------A 262 F + S S S+ G + + G F+ G+ T + A Sbjct: 196 FDSNFHFFESNGSFSWGGTSAGAIIDDVGGGIGPIFNTPGIDSTGLLGTFIDGDTLFTFA 255 Query: 263 LE---RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L+ + + LAEP LTA+SG A F +GG+ ++ +YGV L F Sbjct: 256 LDIAKQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DENGITIEYKEYGVGLKFI 313 Query: 320 PTVLSPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 PTVLS I L + +VSE P + +P R A +T+EL G TI Sbjct: 314 PTVLSDKNINLNLAVDVSEIANTSSLTLSPGGTNSTYVIPPITRRSASSTLELADGQTIG 373 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 +AGLL ++++ + G+P S IP+LG +F + + ETE+ I TP L KP+ +S Sbjct: 374 IAGLLSENVRDVVSGMPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRNRVSL 433 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 P D + +D + + R I ++ + Q+ Sbjct: 434 PTDSFVEPNDFEYYLLGRGAYIAPSNQSRPQDVQD 468 >gi|170703887|ref|ZP_02894570.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] gi|170131202|gb|EDS99846.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] Length = 460 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 132/488 (27%), Positives = 224/488 (45%), Gaps = 43/488 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M + R + + ++A+ +A G +SI K +L Sbjct: 1 MVRMVRWIAFWCLACIVAPGVALAQRAHAADA--------------GAPLSIATGKGEML 46 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + + V+DP+ AD+ V SPRT+++FGK G +I +G + + +L ++++ D Sbjct: 47 SLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQVDT 106 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 A L+ L + V ++++ G V + D+ ++ +L+ Sbjct: 107 ASLQTVLDSRFPQLKLAVSGAPGSLMVSGKVPSAADADAVMQSLTPYLNDK--------- 157 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--- 237 ++++N L ++ QV L+V + EV R++ +Q+G S G++ Sbjct: 158 -ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLGINWSSLGAAGNFIGGLFNGRTLMDPT 216 Query: 238 ----FVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 +S G +SV G R+S + VL AL++ I LAEP LTA+SGQ+ASF +GG Sbjct: 217 TRLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGQTASFLAGG 276 Query: 292 QHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345 + ++TGA +V +GV L FTPTVL+ RI L+++ EVSE + Sbjct: 277 EIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVLADNRISLKVRPEVSEVDANNSVTTGG 336 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P VR+ +TTVEL SG + + GLL+ IP L ++PI+G LF + F Sbjct: 337 VTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTANTVSQIPGLGRLPIIGRLFSSKNFQD 396 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 +TE+ + TP++V+P L + D + F R + + Sbjct: 397 NKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSDLEFAVQRNLGLDLMSGETPRP---- 452 Query: 466 KGAIGFIY 473 GA GF+Y Sbjct: 453 VGAAGFVY 460 >gi|170750189|ref|YP_001756449.1| type II and III secretion system protein [Methylobacterium radiotolerans JCM 2831] gi|170656711|gb|ACB25766.1| type II and III secretion system protein [Methylobacterium radiotolerans JCM 2831] Length = 546 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 152/498 (30%), Positives = 248/498 (49%), Gaps = 55/498 (11%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A V+ + E +++ + + +I+ +P D ++V V++P A+ VV S R +++ G Sbjct: 49 GPAPVLTVGAAEANTTRRVELTAGRSVIVDLPRDAKEVFVANPAVANAVVRSTRKVFVIG 108 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIA--HLEMTLRRFIADSNIRVEMVSDTVVLHG 149 G ++ ++ +G+Q+ LD+ + RD+ L L + I V +V+L G Sbjct: 109 MADGATSIFIMDAEGRQIAALDVTVARDLNLGTLRELLSQSIPGGRFDVRSSGASVLLSG 168 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANS----------SSKKVMNLLNIAGEDQVTLK 199 V + D+Q+A++++ F+ G + S V+N L I +DQV L+ Sbjct: 169 AVNSSSDAQQAIDIANAFVGLGGGGAAGPAGAASGGVAAGSRGAVINNLTIRNKDQVMLR 228 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKF------------------- 238 VT+ EV R++LKQ G + S+ P + GG Sbjct: 229 VTVVEVSRNVLKQFGINMAGNWSALNPVGNLGQTVVNGGTAAATQVPAYLPNVITNNLPF 288 Query: 239 -----VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G FS + L A E+A R LAEPTLTAISG++A F +GG+ Sbjct: 289 PINTNTPSGNLIQASVQGGGFSLQATLKAFEQAGVSRILAEPTLTAISGEAAKFLAGGEF 348 Query: 294 LYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--------VI 341 ++ + +T YGV L FTPTVL+ RI +R+ T+V+E VI Sbjct: 349 AVPASATCAVGGVCSPGITYKPYGVALSFTPTVLADNRISIRVATDVTEIDTQQSFSYVI 408 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G + +P RVR+++TTVELPSGG ++ AGL++ +Q G+P L +PILGALFR+ Sbjct: 409 GNTSVAVPGTRVRRSETTVELPSGGVMMTAGLIQQFNKQAIAGLPGLINLPILGALFRSR 468 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + R+ETE+ I TP++ +P+ + +SRPDD++ D + ++N+IYG Sbjct: 469 DYQRQETELMIMCTPYIARPMEPKQVSRPDDNFVDASDGQTVLLGQINRIYGKVAPPGAT 528 Query: 462 -----GQNYKGAIGFIYK 474 G+ Y+G +GFI + Sbjct: 529 AAAPLGRAYRGRVGFIVE 546 >gi|27365106|ref|NP_760634.1| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus CMCP6] gi|27361252|gb|AAO10161.1| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus CMCP6] Length = 488 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 118/449 (26%), Positives = 202/449 (44%), Gaps = 30/449 (6%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 GK +++ +K + + + V + DP D+V+ ++L G+ +G N++ Sbjct: 21 ATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTNLMAW 80 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G + +++I + D+ L+ L F+ + I+V + ++L GMV T + A+ Sbjct: 81 DSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMNIALR 140 Query: 163 LSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 ++ET+ + ++ S + + V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 141 VAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNF 200 Query: 218 SI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH-------ALE--- 264 GS S + S G F+V G+ T + AL+ Sbjct: 201 HFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFALDIAK 260 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + LAEP LTA+SG A F +GG+ S ++ +YGV L F PT+LS Sbjct: 261 ENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSD--GVTIEYKEYGVGLKFVPTILS 318 Query: 325 PGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 RI L + +VSE + +P R A +T+EL G TI +AGLL Sbjct: 319 DKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGIAGLL 378 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++++ + +P IP+LG LF + + ETE+ I TP L KP+ ++ P D + Sbjct: 379 SENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLPTDAF 438 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 D K + I + Q Sbjct: 439 VEPSDLKYYLLGVGAYIAESPTNANAAAQ 467 >gi|114568970|ref|YP_755650.1| type II and III secretion system protein [Maricaulis maris MCS10] gi|114339432|gb|ABI64712.1| type II and III secretion system protein [Maricaulis maris MCS10] Length = 491 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 150/482 (31%), Positives = 259/482 (53%), Gaps = 39/482 (8%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P A+ + N + I + G + + + L+K ++ +PVDV DVLV++P + Sbjct: 21 PVAAQPAGTERGNTMQVYIREPGNGPVSETLDLPLSKAAVVHLPVDVADVLVTNPAVVEA 80 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 +V +PR Y+ G +GQ N +G+ +L+LD+ +ERD++ L+ ++ RF+ ++ I VE Sbjct: 81 IVRTPRRAYIMGMGIGQTNAFFFDANGQLILDLDLRVERDLSPLQESIDRFLPNARIEVE 140 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 ++D +VL G + D+ A+ +++ ++ + +++++++ +QV L+ Sbjct: 141 AMNDHIVLSGRAPSASDADAALRIAQRWVD----------NPDNILSMISVEAREQVMLR 190 Query: 200 VTIAEVRRDILKQIGFQHSITGSSS--GPSKSFAADFG--GKFVSEGG---DFSVKGVLD 252 V I E++R I++Q+G S G++ G S + DF G+F+ D+ Sbjct: 191 VRIVEMQRTIVRQLGVNLSTAGTTGEFGFGVSTSPDFSRVGRFLGGTSAMLDWVSGNTGG 250 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 S +L A+ER +RTLAEP LTAI+G+SA+F +GG+ G + + Sbjct: 251 VESVSAMLQAMERVGLVRTLAEPNLTAITGESANFLAGGEFPVPVGRDRDGNIIIEYKPF 310 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVS--------------------EPVIGVNAGDMPSYR 352 GV L FTP VLS GRI LRI TEVS + V +P+ Sbjct: 311 GVGLGFTPVVLSEGRISLRISTEVSELTSQGSLTFQSNNVLDDDGNVIGTVPGLTIPALN 370 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 V +A+TTVELPSGG++VLAGL++++ +Q +G+P + +P+LG+LFR+ + +ETE+ + Sbjct: 371 VNRAETTVELPSGGSLVLAGLIQEETRQNLDGVPGVQNLPVLGSLFRSRDYENQETELVV 430 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 TP+LV P L P D + +A F R+N+ Y S+ + + G +GF+ Sbjct: 431 LVTPYLVDPTNPNQLQTPADGFRNASEASGLLFGRINRAYSVPG-SDTGDRGWSGPVGFL 489 Query: 473 YK 474 ++ Sbjct: 490 FE 491 >gi|167719684|ref|ZP_02402920.1| type II/III secretion system protein [Burkholderia pseudomallei DM98] gi|167902788|ref|ZP_02489993.1| type II/III secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 448 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +++ ++++P V V+DP ADV V +P+ +++ GK G + +G + Sbjct: 23 GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 82 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +L ++++ D L+ L + + ++++ G V + D+ V+ + Sbjct: 83 RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 142 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +L Q + ++N L +A QV L+V I EV R+I +Q+G S G+S Sbjct: 143 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 192 Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277 F +S G FSV G R+S + VL AL++ I LAEP L Sbjct: 193 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 252 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVS Sbjct: 253 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 312 Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 +P V G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+ Sbjct: 313 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 372 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG LF + + ++TE+ + TP++V+P +L D + F R I Sbjct: 373 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 430 Query: 454 PKEASEVEGQNYKGAIGFIY 473 + + G GF+Y Sbjct: 431 --DPLGGDAPRLAGPAGFVY 448 >gi|37680844|ref|NP_935453.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016] gi|37199593|dbj|BAC95424.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016] Length = 488 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 118/449 (26%), Positives = 202/449 (44%), Gaps = 30/449 (6%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 GK +++ +K + + + V + DP D+V+ ++L G+ +G N++ Sbjct: 21 ATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTNLMAW 80 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G + +++I + D+ L+ L F+ + I+V + ++L GMV T + A+ Sbjct: 81 DSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMNIALR 140 Query: 163 LSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 ++ET+ + ++ S + + V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 141 VAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNF 200 Query: 218 SI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH-------ALE--- 264 GS S + S G F+V G+ T + AL+ Sbjct: 201 HFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFALDIAK 260 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + LAEP LTA+SG A F +GG+ S ++ +YGV L F PT+LS Sbjct: 261 ENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSD--GVTIEYKEYGVGLKFVPTILS 318 Query: 325 PGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 RI L + +VSE + +P R A +T+EL G TI +AGLL Sbjct: 319 DKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGIAGLL 378 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++++ + +P IP+LG LF + + ETE+ I TP L KP+ ++ P D + Sbjct: 379 SENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLPTDAF 438 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 D K + I + Q Sbjct: 439 VEPSDLKYYLLGVGAYIAESPTNANATAQ 467 >gi|116748930|ref|YP_845617.1| type II and III secretion system protein [Syntrophobacter fumaroxidans MPOB] gi|116697994|gb|ABK17182.1| type II and III secretion system protein [Syntrophobacter fumaroxidans MPOB] Length = 482 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 138/486 (28%), Positives = 214/486 (44%), Gaps = 32/486 (6%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 R S+ + A + + E +KI + + K +I++ Sbjct: 2 CSRLGLVGFVKASMVLAFSLVLISSSALHAAGPVKVVTGEHA-ARKIHLQVGKSVIVRSG 60 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V + P AD+V SP +Y+ GK G N+ L D K DI + D L Sbjct: 61 APVVRTTLGSPDVADIVALSPTQIYITGKATGVTNLTLWQSDDKVSAIYDIEVAPDTMRL 120 Query: 124 EMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + L + I+V D++ L G + + +A+ L+E + S K Sbjct: 121 KEKLHEVLPGERDIKVSASHDSLTLSGTISSSTHLAQAMTLAEAY-----------SGGK 169 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--HSITGSSSGPSKSFAAD---FGGK 237 KV+NLL ++G QV L+V +AE+ R + ++G ++ GS A F G Sbjct: 170 KVINLLQVSGVHQVMLEVRVAEMSRTLTNRLGINSIWNVNGSMGASLLGNLASLDKFAGS 229 Query: 238 FVSEGGDFSVKGVLDR--------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +F+ ++ F++ + AL+ ++ LAEPTL A+SGQSASF + Sbjct: 230 ASGSSSEFTFAPTVNSLFHILGGPFTWTAFIDALKEDGLVKVLAEPTLIAMSGQSASFLA 289 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNA 345 GG+ V G + +GV L FTPTVL+ R+ + + EVSE I + Sbjct: 290 GGEFPIP-VPQGLGTVGIEYKQFGVSLAFTPTVLNDKRMNIIVAPEVSELDYTTAINIAG 348 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P RK T +EL G + +AGLLKD I++ + P+L IP+LGALFR+ F R Sbjct: 349 VAVPGLTTRKVSTAIELNDGQSFAIAGLLKDTIREDAKKFPILGSIPVLGALFRSVSFQR 408 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 ETE+ + TP L KP+ + P D + D++ FF + PK A Sbjct: 409 NETELIVIVTPRLAKPIDVATQPLPTDKFIEPSDSEFFFLGLLQG-RAPKPAPRAPLPIT 467 Query: 466 KGAIGF 471 GF Sbjct: 468 DKKAGF 473 >gi|167841781|ref|ZP_02468465.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 433 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 128/444 (28%), Positives = 214/444 (48%), Gaps = 27/444 (6%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 +++ ++++P V V+DP ADV V +P+ +++ GK G + + Sbjct: 4 AAEPAPVLAVPAGGGEMVKLPEPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFAL 63 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G + + +L ++++ D L+ L ++ + ++++ G V + D+ + Sbjct: 64 GANNRTILRETVVVDVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVAQ 123 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + +L Q + ++N L +A QV L+V I EV R+I +Q+G S G+ Sbjct: 124 TLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGA 173 Query: 223 SSGPSKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLA 273 S F +S G FSV G R+S + VL AL++ I LA Sbjct: 174 SGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVLGGFHTSRYSIDGVLDALDQEGLITMLA 233 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 EP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ Sbjct: 234 EPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVR 293 Query: 334 TEVS--EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 EVS +P V G + P+ VR+ DTTVEL SG + + GLL+ + +P L+ Sbjct: 294 PEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLA 353 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++P+LG LF + + ++TE+ + TP++V+P +L D + F R Sbjct: 354 RLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELHDALDDVTRPSSDIEFVLQRSL 413 Query: 450 KIYGPKEASEVEGQNYKGAIGFIY 473 I + + G GF+Y Sbjct: 414 GI----DPLGGDAPRLAGPAGFVY 433 >gi|315497465|ref|YP_004086269.1| type II and iii secretion system protein [Asticcacaulis excentricus CB 48] gi|315415477|gb|ADU12118.1| type II and III secretion system protein [Asticcacaulis excentricus CB 48] Length = 476 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 144/466 (30%), Positives = 239/466 (51%), Gaps = 20/466 (4%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 + V P A + + + G + +++ + ++ +PVD DV VS+P A Sbjct: 21 AVSGVEAAPKPYSAPVSPMTVQTQTSGARTQVLNLAKGRSAVVDLPVDAADVFVSNPAVA 80 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 D V+ +PR +++ G GQ++ I G+Q+LNL I + L T+++ S+++ Sbjct: 81 DAVLRTPRRIFVLGVAAGQSDAIFFDATGRQILNLQIRVGVSTDQLSDTVQKLYPQSDVQ 140 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V+ V+ V+L G+V +S+ LS F + + ++N+L++AG+DQV+ Sbjct: 141 VQSVNGYVILSGVVANASESEAIQRLSVAFAEK----------PENIINMLSVAGKDQVS 190 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 LKV I EV++ +KQ+GF + +G + + + +K Sbjct: 191 LKVRIVEVQKSSIKQMGFNFNGLSGQTGEVQYALQNAPTYGTNGKALGGMKIGYADKLLS 250 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 L A ER +RTLAEP L A+SG+SA F +GG+ + G +V YGV L Sbjct: 251 ASLQAFERVGLVRTLAEPNLAAVSGESAKFLAGGEFPVPVAKDTQGRVTVEFKTYGVGLG 310 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVELPSGGTIVLAG 372 FTP VLS G I L++ TEVSE V + +P VR+A+TTVELPSGG++++AG Sbjct: 311 FTPVVLSNGTISLKLSTEVSEIVNTGSFSLDDTFTIPGLSVRRAETTVELPSGGSLMIAG 370 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 LL+ +Q + +P ++ IP+LGALFR+ F E+TE+ + TP+++ + P D Sbjct: 371 LLQSKYKQSIDALPGMTTIPVLGALFRSRDFLDEQTEMVVIVTPYIISAKSPDAFQTPAD 430 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI----GFIYK 474 ++ V D ++ F R+NK K E G+ G++ + Sbjct: 431 NFQVASDLESVFLGRLNKSVRAKRGEVAEAPPLAGSYQAPIGYVIE 476 >gi|167581961|ref|ZP_02374835.1| type II/III secretion system protein [Burkholderia thailandensis TXDOH] Length = 441 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 131/453 (28%), Positives = 216/453 (47%), Gaps = 27/453 (5%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 AAV +++ ++++P V V+DP ADV V +P+ +++ GK Sbjct: 3 AAVEPRLARAAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKK 62 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G + +G + + +L +++ D L+ L ++ + ++++ G V + Sbjct: 63 AGTTTLFALGANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPS 122 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D+ V+ + +L Q + ++N L +A QV L+V I EV R+I +Q+ Sbjct: 123 AADADAVVQTLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQL 172 Query: 214 GFQHSITGSSSGPSKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALE 264 G S G+S F +S G FSV G +S + VL AL+ Sbjct: 173 GINWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALD 232 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + I LAEP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ Sbjct: 233 QEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLA 292 Query: 325 PGRIGLRIQTEVS--EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 RI L+++ EVS +P V G + P+ VR+ DTTVEL SG + + GLL+ Sbjct: 293 DNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSD 352 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 + +P L+++P+LG LF + + ++TE+ + TP++V+P +L D + Sbjct: 353 VLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSD 412 Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F R I + + G GF+Y Sbjct: 413 IEFVLQRSLGI----DPLGGDAPRLTGPAGFVY 441 >gi|320155489|ref|YP_004187868.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] gi|319930801|gb|ADV85665.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] Length = 488 Score = 332 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 118/449 (26%), Positives = 202/449 (44%), Gaps = 30/449 (6%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 GK +++ +K + + + V + DP D+V+ ++L G+ +G N++ Sbjct: 21 ATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTNLMAW 80 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G + +++I + D+ L+ L F+ + I+V + ++L GMV T + A+ Sbjct: 81 DSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMNIALR 140 Query: 163 LSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 ++ET+ + ++ S + + V+NL+ I G QV L+VT+AEV+R ++++ Sbjct: 141 VAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRFDSNF 200 Query: 218 SI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH-------ALE--- 264 GS S + S G F+V G+ T + AL+ Sbjct: 201 HFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFALDIAK 260 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + LAEP LTA+SG A F +GG+ S ++ +YGV L F PT+LS Sbjct: 261 ENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSD--GVTIEYKEYGVGLKFVPTILS 318 Query: 325 PGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 RI L + +VSE + +P R A +T+EL G TI +AGLL Sbjct: 319 DKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGIAGLL 378 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++++ + +P IP+LG LF + + ETE+ I TP L KP+ ++ P D + Sbjct: 379 SENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLPTDAF 438 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 D K + I + Q Sbjct: 439 VEPSDLKYYLLGVGAYIAESPTNANAAVQ 467 >gi|261252087|ref|ZP_05944660.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] gi|260935478|gb|EEX91467.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] Length = 480 Score = 332 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 126/460 (27%), Positives = 212/460 (46%), Gaps = 34/460 (7%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 IS GK +++ +K + + + V + DP D+V+ ++L GK +G N Sbjct: 10 ISFAATQSGKIVTVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDEVFLIGKKLGSTN 69 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G+ + +++I + D+ L+ L F+ D I+V ++L G V + Sbjct: 70 LMAWDSRGQLIESINIEVTHDLNSLKAKLFEFLPDEEIKVHSAQHRLILSGQVSSQSVMN 129 Query: 159 RAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 A+ ++ET+ + ++ +S S + V+NLL I G QV L+VT+AEV+R ++++ Sbjct: 130 IALRVAETYSAGKEADKGKSSLSNQVNSTGVINLLTIGGAQQVMLEVTVAEVQRTLVRKF 189 Query: 214 GFQHSITGSSSGPSKSFAADFGGKF----VSEGGDFSVKGVLDRFSFETVLH-------A 262 +S G GG G F+ GV T + A Sbjct: 190 DANFHFFQTSGGEFSWGGTSAGGVIDDVNNVIGPIFNAPGVESTGLLGTFIDSNTLFTFA 249 Query: 263 LE---RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L+ + + LAEP LTA+SG A F +GG+ S ++ +YGV L F Sbjct: 250 LDIAKQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVPSED--GITIEYKEYGVGLKFI 307 Query: 320 PTVLSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 PTVLS +I L + +VS P +P R A +T+EL G TI Sbjct: 308 PTVLSDKKINLNLAVDVSELATSTTLTLNPGATNGTYVIPPITRRSASSTLELADGQTIG 367 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 +AGLL ++++ + E +P S IP+LG +F + + ETE+ I TP L KP+ R ++ Sbjct: 368 IAGLLSENVRDVVEEMPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRRRITL 427 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 P + + +D + + R I ASE + + G+ Sbjct: 428 PTESFVEPNDFEYYLLGRGAYI---APASEQKSEQEVGSF 464 >gi|308050059|ref|YP_003913625.1| type II and III secretion system protein [Ferrimonas balearica DSM 9799] gi|307632249|gb|ADN76551.1| type II and III secretion system protein [Ferrimonas balearica DSM 9799] Length = 487 Score = 332 bits (852), Expect = 7e-89, Method: Composition-based stats. Identities = 116/410 (28%), Positives = 197/410 (48%), Gaps = 19/410 (4%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 + ++K + + + V V +P AD+++ +P+ +Y+ G+ +G N+++ + + Sbjct: 49 PVPIHKSKTMSLANAAERVSVGNPAIADILLINPKELYILGRQLGSTNIMVWDDQDRLVD 108 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 +DI I D+ L+ L RF+ D I V +V+ G V + A++L+ + Sbjct: 109 IVDIEITHDLNGLKEKLHRFLPDEPIEVHSSQGQLVIGGQVSNLDRMNMALDLAHGYAVA 168 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 + + ++ V+NL+++ G QV L+VT+ EV+R++ + + ++ G Sbjct: 169 ANNSD----NTSTVLNLMSVGGGHQVMLEVTVTEVQRELARTLDSDFALVFE--GSDFIG 222 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G +S G F V F+ + ++ R LAEP LT +SGQ A F SG Sbjct: 223 GLLGGDGLISNKGIFG-SYVSGDVLFDFAIDMAKQQGLARVLAEPNLTTMSGQMAEFLSG 281 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----------PV 340 G+ T++ ++GV + F PTVL GRI L + VSE P Sbjct: 282 GEFPIPVP--DRDGTTIEYKEFGVGVKFVPTVLDSGRINLNLNVLVSELSNANAVGVIPE 339 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 A PS R A++T+EL G TI +AGLL +++ + +P L +IP+LG LF + Sbjct: 340 GSTTALVTPSITKRSANSTIELGDGQTIAIAGLLSSTVRESMDELPGLGEIPVLGQLFSS 399 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 + ETE+ I TP LV+PV L P D + D + R++K Sbjct: 400 QEYRNGETELVILVTPRLVRPVDREKLVLPTDGFVDPTDLGFYLMGRLSK 449 >gi|292491519|ref|YP_003526958.1| type II and III secretion system protein [Nitrosococcus halophilus Nc4] gi|291580114|gb|ADE14571.1| type II and III secretion system protein [Nitrosococcus halophilus Nc4] Length = 565 Score = 332 bits (851), Expect = 9e-89, Method: Composition-based stats. Identities = 130/527 (24%), Positives = 228/527 (43%), Gaps = 79/527 (14%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 ++ F +S P + +I SD+E + L K ++++ + + Sbjct: 28 IIVFFSLTSLALAQTSPLTPRQSENLIIQSDIE----GDFQVPLYKSGVIELEERAKRIS 83 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V +P AD+++ R +Y+ GK +G NV++ + + + +I + D+ L+ L R Sbjct: 84 VGNPGIADILMLHSRQLYVVGKALGTTNVVVWDKNERVFASFNIEVVHDLDTLKRKLHRL 143 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--------------------- 169 + I V + ++L G V ++ + A +L++ FL Sbjct: 144 LPGEVIEVHSAQERIILSGQVSSVVKMKAAEDLAQGFLPECISAESNVLVRDTTQGTPII 203 Query: 170 --QSGRNQYANSSSKK------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 Q + A+ ++++ V+NL+ + G QV L++ +AE+ R +LK+ ++ Sbjct: 204 IQQGDGGRGASGANQEGCKKGSVVNLMQVGGAHQVMLEIKVAEIARTVLKRFDSNFNVFS 263 Query: 222 SSS---GPSKSFAADFGGKFVSEGGDFSVKGVLDR------------------------- 253 S + S A F G + + G L+ Sbjct: 264 FDSPWKFGANSGGASFPNALTPSGNEVPILGSLNGEDSPIGPVVDLFQPNTPGIQDKGVF 323 Query: 254 -------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-TGAT 305 F E VL A + + LAEPTLT ++GQ A F SGG+ S TG Sbjct: 324 LSYLSSKFFLEAVLEASRQKGLAKVLAEPTLTTLTGQEAQFVSGGEFPIPVPQSGITGNV 383 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----------NAGDMPSYRVRK 355 ++ ++GV+++F P VL GRI L++ VSE V N +PS R Sbjct: 384 TIEFKEFGVIVNFLPLVLDSGRINLKLNVAVSELSQDVPVTLGVQGTENTFVIPSLTKRS 443 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A TVEL G TI +AGL+ D++++L +P L +PILGALFR+ F +TE+ + T Sbjct: 444 AKATVELADGQTIGIAGLINDNLRELVTKLPGLGDVPILGALFRSQEFMSGQTELVMFVT 503 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 P L +P++ + + P D + D + + R+ + +G Sbjct: 504 PHLARPISPQQVKLPTDSFVPPTDLEFYLMGRMEAREMSNSSPSSQG 550 >gi|171320618|ref|ZP_02909638.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] gi|171094131|gb|EDT39218.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] Length = 460 Score = 332 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 132/458 (28%), Positives = 215/458 (46%), Gaps = 29/458 (6%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 A + G +SI K +L + + V+DP+ AD+ V SPRT+++F Sbjct: 17 VAPGVALAQRAHAADAGAALSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVF 76 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 GK G +I +G + + +L ++++ D A L+ L + V ++++ G Sbjct: 77 GKKAGTTTLIALGANHRPILRRTVIVQVDTASLQTVLDSRFPQLKLSVSGAPGSLMVSGK 136 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V + D+ ++ +L+ +K++N L ++ QV L+V + EV R++ Sbjct: 137 VPSAADADAVMQSLTPYLNDK----------EKIVNRLTLSRPIQVNLRVRVTEVSRNVT 186 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGK-------FVSEGGDFSVKGVL--DRFSFETVLH 261 +Q+G S G++ +S G +SV G R+S + VL Sbjct: 187 QQLGINWSSLGAAGNFIGGLFNGRTLMDPTTKLFNLSPTGAYSVLGGFHAGRWSIDVVLD 246 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFT 319 AL++ I LAEP LTA+SGQ+ASF +GG+ S+TGA +V +GV L FT Sbjct: 247 ALDQEGLITMLAEPNLTAMSGQTASFLAGGEIPIPVAQAGSTTGAITVEFKPFGVSLDFT 306 Query: 320 PTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PTVL+ RI L+++ EVSE + +P VR+ +TTVEL SG + + GLL+ Sbjct: 307 PTVLADNRISLKVRPEVSEVDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQ 366 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 IP L ++PI+G LF + F +TE+ + TP++V+P L + D + Sbjct: 367 SQTADTVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVA 426 Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 F R + E GA GF+Y Sbjct: 427 RPSSDLEFAVQRNLGLDLLSG----ETPRLVGAAGFVY 460 >gi|260776715|ref|ZP_05885610.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] gi|260607938|gb|EEX34203.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] Length = 476 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 119/454 (26%), Positives = 207/454 (45%), Gaps = 33/454 (7%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 S K + + +K + + + V + DP D+V+ ++L GK +G N+ Sbjct: 7 SHAATQSSKVVKVPHHKSTHVTLVGKAKRVSLGDPEVLDIVMLKSNEVFLIGKKLGSTNL 66 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + G+ + +++I + D+ L+ L F+ D I V + ++L G+V + Sbjct: 67 MAWDSRGRLIESINIEVTHDLNSLKAKLFEFLPDEEIGVHSAQNRLILSGLVSSQSAMNI 126 Query: 160 AVELSETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQI- 213 A+ ++ET+ + ++ S S++V +NLL I G QV L+VT+AEV+R ++++ Sbjct: 127 ALRVAETYAAGQEVDKETESLSEQVSKTGVINLLTIGGAQQVMLEVTVAEVQRTLVRKFD 186 Query: 214 ----GFQHSITGSSSGPSKSFAAD---------FGGKFVSEGGDFSVKGVLDRFSFETVL 260 FQ S + G S + D F + G + F F L Sbjct: 187 SNFHFFQSSGDFNWGGTSAGGSIDDVNNVVAPIFNAPTIENTGLLGTLIDSNTF-FTFAL 245 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ++ + LAEP LTA+SG A F +GG+ ++ +YGV L F P Sbjct: 246 DIAKQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DEDGITIEYKEYGVGLKFIP 303 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVL 370 T+L+ +I L + +VSE +P R A +T+EL G TI + Sbjct: 304 TILTDQKINLNLAVDVSEIANSATLTLAPGGTNATYVIPPITRRSASSTLELADGQTIGI 363 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGLL ++++ +P S IPILG +F + + ETE+ I TP L KP+ ++ P Sbjct: 364 AGLLSENVRDSVAEMPGFSDIPILGQMFNSQEYISGETELVILVTPRLAKPIDRNRVTLP 423 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 D + +D + + R + P +AS+ + + Sbjct: 424 TDSFVEPNDFEYYLLGRGAYLE-PADASKPKAER 456 >gi|83859357|ref|ZP_00952878.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633] gi|83852804|gb|EAP90657.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633] Length = 529 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 155/541 (28%), Positives = 262/541 (48%), Gaps = 79/541 (14%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG---KKISIGLNKV 57 M +T + + P+ A+L + + + E G G + + + L + Sbjct: 1 MARFSQTLCAVALMAAACVCPAEAQLSGGRTEANNTLQVHIREPGAGPASESLQLPLGQA 60 Query: 58 IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 ++ +P D DV++++ A VV + R ++ G+ VG+ N+ DG +L+L++ +E Sbjct: 61 AVIHLPEDAADVVIANDEVASAVVRTTRRAFVMGQAVGRTNIFFFNADGGLILDLNVRVE 120 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 RDIA L+ L RF+ + I+ E ++ +VL G V + + A+++++ ++ Sbjct: 121 RDIAALQDALDRFVPEGRIQAESMNANIVLSGQVPSAAAADTALQVAQRWVD-------- 172 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI------------------------ 213 + ++V++ L + G DQVTL+V I E+ R +++Q+ Sbjct: 173 --TPEQVVSFLTVEGRDQVTLQVRIVEMERTLVRQLGVNLSGEQAFGEFTPTVRTAATND 230 Query: 214 --------------------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 FQ+S +S A GG + G V GVL Sbjct: 231 RGDPLFDQNGAPIYEVYQQGRFQNSAGWGTSNAFGVAGAALGGLTGTLGTQNLVDGVLQS 290 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 S L+ALER +RTLAEP +TAISG+ A F +GG+ G ++ +G Sbjct: 291 -SISATLNALERVGLVRTLAEPNITAISGEPAQFLAGGEFPVPVGRDRDGNVTIEFKPFG 349 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS--------------------EPVIGVNAGDMPSYRV 353 V L FTP VLS GRI LR+ TEVS V +P+ V Sbjct: 350 VGLGFTPVVLSEGRISLRVSTEVSELSNEGAISLNSQVITDDQGNVTGTVQGVTIPALSV 409 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 +A+TTVELPSGG++V+AGL++++ +Q + +P + ++P+LG+LFR+ F ETE+ + Sbjct: 410 NRAETTVELPSGGSMVIAGLIREETRQAMDSVPGIERMPVLGSLFRSRDFANNETELVVV 469 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 TP+LV P+ D+ P + ++V A F R+N++Y A +VE + + G IGF+ Sbjct: 470 VTPYLVDPLNPNDVESPAEGFAVSSLAAGAFLGRLNRVYAAPGA-QVENRGWSGPIGFVL 528 Query: 474 K 474 + Sbjct: 529 E 529 >gi|121600042|ref|YP_993006.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|124383335|ref|YP_001026338.1| type II secretion system protein [Burkholderia mallei NCTC 10229] gi|126450127|ref|YP_001080388.1| RhcC2 [Burkholderia mallei NCTC 10247] gi|237812165|ref|YP_002896616.1| type II/III secretion system protein [Burkholderia pseudomallei MSHR346] gi|254178619|ref|ZP_04885274.1| RhcC2 [Burkholderia mallei ATCC 10399] gi|254358540|ref|ZP_04974813.1| RhcC2 [Burkholderia mallei 2002721280] gi|121228852|gb|ABM51370.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|124291355|gb|ABN00624.1| putative type II secretion system protein [Burkholderia mallei NCTC 10229] gi|126242997|gb|ABO06090.1| RhcC2 [Burkholderia mallei NCTC 10247] gi|148027667|gb|EDK85688.1| RhcC2 [Burkholderia mallei 2002721280] gi|160699658|gb|EDP89628.1| RhcC2 [Burkholderia mallei ATCC 10399] gi|237503093|gb|ACQ95411.1| type II/III secretion system protein [Burkholderia pseudomallei MSHR346] Length = 482 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +++ ++++P V V+DP ADV V +P+ +++ GK G + +G + Sbjct: 57 GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 116 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +L ++++ D L+ L + + ++++ G V + D+ V+ + Sbjct: 117 RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 176 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +L Q + ++N L +A QV L+V I EV R+I +Q+G S G+S Sbjct: 177 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 226 Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277 F +S G FSV G R+S + VL AL++ I LAEP L Sbjct: 227 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 286 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVS Sbjct: 287 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 346 Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 +P V G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+ Sbjct: 347 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 406 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG LF + + ++TE+ + TP++V+P +L D + F R I Sbjct: 407 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 464 Query: 454 PKEASEVEGQNYKGAIGFIY 473 + + G GF+Y Sbjct: 465 --DPLGGDAPRLAGPAGFVY 482 >gi|76811933|ref|YP_333435.1| RhcC2 [Burkholderia pseudomallei 1710b] gi|126441311|ref|YP_001058908.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|126453026|ref|YP_001066150.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|134282366|ref|ZP_01769071.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|217421397|ref|ZP_03452901.1| type II/III secretion system protein [Burkholderia pseudomallei 576] gi|226196310|ref|ZP_03791892.1| type II/III secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|242314528|ref|ZP_04813544.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|254179872|ref|ZP_04886471.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|254188722|ref|ZP_04895233.1| type II/III secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254197611|ref|ZP_04904033.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|254261104|ref|ZP_04952158.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] gi|254297713|ref|ZP_04965166.1| type II/III secretion system protein [Burkholderia pseudomallei 406e] gi|76581386|gb|ABA50861.1| RhcC2 [Burkholderia pseudomallei 1710b] gi|126220804|gb|ABN84310.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|126226668|gb|ABN90208.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|134246404|gb|EBA46493.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|157806781|gb|EDO83951.1| type II/III secretion system protein [Burkholderia pseudomallei 406e] gi|157936401|gb|EDO92071.1| type II/III secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|169654352|gb|EDS87045.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|184210412|gb|EDU07455.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|217395139|gb|EEC35157.1| type II/III secretion system protein [Burkholderia pseudomallei 576] gi|225931527|gb|EEH27532.1| type II/III secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|242137767|gb|EES24169.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|254219793|gb|EET09177.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] Length = 482 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +++ ++++P V V+DP ADV V +P+ +++ GK G + +G + Sbjct: 57 GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 116 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +L ++++ D L+ L + + ++++ G V + D+ V+ + Sbjct: 117 RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 176 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +L Q + ++N L +A QV L+V I EV R+I +Q+G S G+S Sbjct: 177 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 226 Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277 F +S G FSV G R+S + VL AL++ I LAEP L Sbjct: 227 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 286 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVS Sbjct: 287 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 346 Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 +P V G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+ Sbjct: 347 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 406 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG LF + + ++TE+ + TP++V+P +L D + F R I Sbjct: 407 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 464 Query: 454 PKEASEVEGQNYKGAIGFIY 473 + + G GF+Y Sbjct: 465 --DPLGGDAPRLAGPAGFVY 482 >gi|237678812|emb|CAQ57539.1| RhcC2 protein [Bradyrhizobium elkanii] Length = 484 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 130/476 (27%), Positives = 217/476 (45%), Gaps = 21/476 (4%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 L R + + + S+ + A++ + G +++ ++ + + Sbjct: 25 LSRLCYVLCGFAMLFSSAAAAEIKRDGKGEPPRAAPG----GTSGTLNLTSSQGKTVHLT 80 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + V+DPT AD S T+++FGK G+ ++ + +G+ + L +++ + I L Sbjct: 81 AAATSIFVADPTIADYQAPSNTTIFVFGKKSGRTSLFALNENGEALAELRVVVTQPIEDL 140 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 TLR + D I V +L G + + A +++E FL + Sbjct: 141 RATLRAEVGDYPIHVSYTPRGAILSGTAPNAEVVETAKKVTEQFLG----------AGSL 190 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 V+N + +AG QV L V +AEV R +K + + + S +G D G GG Sbjct: 191 VVNKIQVAGSLQVNLSVRVAEVSRSAVKDLNIHFTAS-SPNGAFLISGKDGGSGAAGGGG 249 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + + VL AL LAEP LTA+SG+SASF +GG+ + Sbjct: 250 TIGIGFSAGNTNLSAVLDALASEHLASILAEPNLTAMSGESASFLAGGEFPIPVM-QDNR 308 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359 SV +GV L F PTVL+ +I +R++ EVSE + +N ++P+ R+A T Sbjct: 309 QVSVQFRQFGVSLEFVPTVLNNNQINVRVKPEVSELSSEGQVKINGMEVPALSTRRASTV 368 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VEL SG + + GL++ + P L +PILGALFR+S F + ETE+ I TP++V Sbjct: 369 VELASGQSFAIGGLIRRNFNNDIGEFPWLGDVPILGALFRSSSFQKRETELVIIVTPYIV 428 Query: 420 KP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +P +S P D + DA N + + ++A G+ GFI + Sbjct: 429 RPGSNPSRMSAPSDRIAPPSDAGRILTNTLARPPKDRDAPRTSAPGLTGSAGFIIE 484 >gi|239908021|ref|YP_002954762.1| bacterial type II and III secretion system protein family protein [Desulfovibrio magneticus RS-1] gi|239797887|dbj|BAH76876.1| bacterial type II and III secretion system protein family protein [Desulfovibrio magneticus RS-1] Length = 528 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 129/502 (25%), Positives = 225/502 (44%), Gaps = 80/502 (15%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 R + S + A ++ V + ++++ + K +ILQ Sbjct: 4 RNCLPRLWARALAIALSLVLA-------APAQIVWGGVAPVAVRAAPRLALTIGKSVILQ 56 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 D+ V V+ P AD V+ SPR +Y+ G+ G N+ L K D+ + D + Sbjct: 57 SDADIARVSVAQPDVADFVLLSPRQIYVTGRAPGITNLTLWDKGDKIRAVYDLDVAPDAS 116 Query: 122 HLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L+ L + I V D++ L G VR + ++A+ L+E + + Sbjct: 117 RLKKMLHDVMPGETGIEVLASQDSIALSGTVRDAESLKKALSLAEVY------------A 164 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------------------- 221 KKV+NLL+++G QV L+V +AE+ + ++ ++G + G Sbjct: 165 PKKVLNLLSVSGVQQVMLEVRVAEMSKSVVNRMGINLNAVGDGNFGYTLLGGLSTLADTV 224 Query: 222 ------------------SSSGPSKSFAADFGGKF-------------VSEGGDF----S 246 S G S + +A +F +S+G + Sbjct: 225 FNIDNVQNAYKYSTIKFNGSDGSSSTESATIQTRFREFNQPEQSKTVGLSQGTAAMRFST 284 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 G + VL L++ ++ LAEP L ++GQSA F +GG+ V S G TS Sbjct: 285 NWGGAGNTTMTAVLDLLKQNGLVKILAEPNLVCLNGQSAKFLAGGEIPVP-VPSGLGTTS 343 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVEL 362 + ++GV L FTPTV + I L++ EVS+ +++ ++P+ R+A T+VEL Sbjct: 344 IEWKEFGVGLKFTPTV-AGEVISLQVNPEVSDLDYTRAIKLDSFEIPAVLTRRASTSVEL 402 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +G T +AGLLK++ ++ + P + IP+LG LF++S + ++++E+ I T LVKP+ Sbjct: 403 KNGQTFAIAGLLKEEGRESVDKYPWIGDIPVLGNLFKSSSYQKDQSELVILITAHLVKPL 462 Query: 423 AMRDLSRPDDHYSVEDDAKAFF 444 +D+ P D DD + F Sbjct: 463 NKKDMILPTDGVHEPDDLEFFL 484 >gi|294012239|ref|YP_003545699.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] gi|292675569|dbj|BAI97087.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] Length = 543 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 139/517 (26%), Positives = 225/517 (43%), Gaps = 87/517 (16%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 M L + + LP +A A +N+S+ ++ + LNK +L V LV Sbjct: 1 MLASLLALGAGASLLPMQAQAQVASLNVSNAN--HAGQLDVPLNKSQVLTVDRPFAKALV 58 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 + ADV+ + R++Y+ GK +G ++ L + +D+ + D+ L+ L I Sbjct: 59 GNAEIADVLPMTNRSVYVLGKKMGTTSLTLYDSRNMMIAVVDVAVGPDVVTLKRQLSELI 118 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 I + +D ++L G V + +AV ++ T+ S+K++N+L++ Sbjct: 119 PGEQIGARISNDALILTGTVSSAAAVDQAVRIASTYAG----------GSEKIVNMLSVG 168 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--------------------------- 224 QV L+V +EV R K++G H+ +S Sbjct: 169 ASQQVMLEVRFSEVNRQAAKELGLNHTFLNNSGKFVGGMGENGLAGVPVTGNTSSMGSGT 228 Query: 225 ------------------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV- 259 S +F+ GG+ ++ +L +F + Sbjct: 229 SNSSSLTNTITTTNGVTNTVNQAVNSSSAFSNISNSSVTGRGGNGALDLLLPTTAFGALG 288 Query: 260 -------------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 L ALER ++TLAEPTL A+SG++ASF +GG+ + G Sbjct: 289 WVTNLGGLRISSALDALERKGLVKTLAEPTLVALSGETASFLAGGEFPIPVAQNGNGTGS 348 Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKA 356 +V +GV L FTPTVLS G I L ++ EVS + +N +P R+A Sbjct: 349 GSNSITVEFKPFGVSLGFTPTVLSDGIINLVVEPEVSSIDPSASVQINGLVIPGLLTRRA 408 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T VEL G + +AGLL++D Q IP+L +PI+GALFR+S F ++ETE+ + TP Sbjct: 409 KTVVELRDGQSFAIAGLLRNDFQDTIRQIPVLGSLPIIGALFRSSGFQKQETELVMIVTP 468 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LVKP+ D+ P D + F R +K G Sbjct: 469 RLVKPMRADDVRLPTDRVGNPHELDLFLMGRTDKAVG 505 >gi|167824270|ref|ZP_02455741.1| type II/III secretion system protein [Burkholderia pseudomallei 9] gi|167919049|ref|ZP_02506140.1| type II/III secretion system protein [Burkholderia pseudomallei BCC215] Length = 444 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +++ ++++P V V+DP ADV V +P+ +++ GK G + +G + Sbjct: 19 GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 78 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +L ++++ D L+ L + + ++++ G V + D+ V+ + Sbjct: 79 RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 138 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +L Q + ++N L +A QV L+V I EV R+I +Q+G S G+S Sbjct: 139 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 188 Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277 F +S G FSV G R+S + VL AL++ I LAEP L Sbjct: 189 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 248 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVS Sbjct: 249 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 308 Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 +P V G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+ Sbjct: 309 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 368 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG LF + + ++TE+ + TP++V+P +L D + F R I Sbjct: 369 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 426 Query: 454 PKEASEVEGQNYKGAIGFIY 473 + + G GF+Y Sbjct: 427 --DPLGGDAPRLAGPAGFVY 444 >gi|167738675|ref|ZP_02411449.1| type II/III secretion system protein [Burkholderia pseudomallei 14] Length = 434 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +++ ++++P V V+DP ADV V +P+ +++ GK G + +G + Sbjct: 9 GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 68 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +L ++++ D L+ L + + ++++ G V + D+ V+ + Sbjct: 69 RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 128 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +L Q + ++N L +A QV L+V I EV R+I +Q+G S G+S Sbjct: 129 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 178 Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277 F +S G FSV G R+S + VL AL++ I LAEP L Sbjct: 179 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 238 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVS Sbjct: 239 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 298 Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 +P V G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+ Sbjct: 299 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 358 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG LF + + ++TE+ + TP++V+P +L D + F R I Sbjct: 359 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 416 Query: 454 PKEASEVEGQNYKGAIGFIY 473 + + G GF+Y Sbjct: 417 --DPLGGDAPRLAGPAGFVY 434 >gi|53719431|ref|YP_108417.1| putative fimbriae assembly-related protein [Burkholderia pseudomallei K96243] gi|167815898|ref|ZP_02447578.1| RhcC2 [Burkholderia pseudomallei 91] gi|167845816|ref|ZP_02471324.1| RhcC2 [Burkholderia pseudomallei B7210] gi|52209845|emb|CAH35817.1| putative fimbriae assembly-related protein [Burkholderia pseudomallei K96243] Length = 439 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +++ ++++P V V+DP ADV V +P+ +++ GK G + +G + Sbjct: 14 GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 73 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +L ++++ D L+ L + + ++++ G V + D+ V+ + Sbjct: 74 RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 133 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +L Q + ++N L +A QV L+V I EV R+I +Q+G S G+S Sbjct: 134 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 183 Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277 F +S G FSV G R+S + VL AL++ I LAEP L Sbjct: 184 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 243 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVS Sbjct: 244 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 303 Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 +P V G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+ Sbjct: 304 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 363 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG LF + + ++TE+ + TP++V+P +L D + F R I Sbjct: 364 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 421 Query: 454 PKEASEVEGQNYKGAIGFIY 473 + + G GF+Y Sbjct: 422 --DPLGGDAPRLAGPAGFVY 439 >gi|167620125|ref|ZP_02388756.1| type II/III secretion system protein [Burkholderia thailandensis Bt4] Length = 427 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 128/441 (29%), Positives = 213/441 (48%), Gaps = 27/441 (6%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 +++ ++++P V V+DP ADV V +P+ +++ GK G + +G + Sbjct: 1 PAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGAN 60 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + +L +++ D L+ L ++ + ++++ G V + D+ V+ + Sbjct: 61 DRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVVQTLK 120 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 +L Q + ++N L +A QV L+V I EV R+I +Q+G S G+S Sbjct: 121 PYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGN 170 Query: 226 PSKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPT 276 F +S G FSV G +S + VL AL++ I LAEP Sbjct: 171 FVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPN 230 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EV Sbjct: 231 LTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEV 290 Query: 337 S--EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 S +P V G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P Sbjct: 291 SEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLP 350 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +LG LF + + ++TE+ + TP++V+P +L D + F R I Sbjct: 351 VLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIEFVLQRSLGI- 409 Query: 453 GPKEASEVEGQNYKGAIGFIY 473 + + G GF+Y Sbjct: 410 ---DPLGGDAPRLTGPAGFVY 427 >gi|83719085|ref|YP_442980.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|257139204|ref|ZP_05587466.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|83652910|gb|ABC36973.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 492 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 128/444 (28%), Positives = 213/444 (47%), Gaps = 27/444 (6%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 +++ ++++P V V+DP ADV V +P+ +++ GK G + + Sbjct: 63 AAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFAL 122 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G + + +L +++ D L+ L ++ + ++++ G V + D+ V+ Sbjct: 123 GANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVVQ 182 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + +L Q + ++N L +A QV L+V I EV R+I +Q+G S G+ Sbjct: 183 TLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGA 232 Query: 223 SSGPSKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLA 273 S F +S G FSV G +S + VL AL++ I LA Sbjct: 233 SGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLA 292 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 EP LTAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ Sbjct: 293 EPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVR 352 Query: 334 TEVS--EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 EVS +P V G + P+ VR+ DTTVEL SG + + GLL+ + +P L+ Sbjct: 353 PEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLA 412 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++P+LG LF + + ++TE+ + TP++V+P +L D + F R Sbjct: 413 RLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIEFVLQRSL 472 Query: 450 KIYGPKEASEVEGQNYKGAIGFIY 473 I + + G GF+Y Sbjct: 473 GI----DPLGGDAPRLTGPAGFVY 492 >gi|167911033|ref|ZP_02498124.1| type II/III secretion system protein [Burkholderia pseudomallei 112] Length = 438 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +++ ++++P V V+DP ADV V +P+ +++ GK G + +G + Sbjct: 13 GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 72 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +L ++++ D L+ L + + ++++ G V + D+ V+ + Sbjct: 73 RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 132 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +L Q + ++N L +A QV L+V I EV R+I +Q+G S G+S Sbjct: 133 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 182 Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277 F +S G FSV G R+S + VL AL++ I LAEP L Sbjct: 183 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 242 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVS Sbjct: 243 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 302 Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 +P V G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+ Sbjct: 303 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 362 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG LF + + ++TE+ + TP++V+P +L D + F R I Sbjct: 363 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 420 Query: 454 PKEASEVEGQNYKGAIGFIY 473 + + G GF+Y Sbjct: 421 --DPLGGDAPRLAGPAGFVY 438 >gi|153834055|ref|ZP_01986722.1| Flp pilus assembly protein [Vibrio harveyi HY01] gi|148869610|gb|EDL68600.1| Flp pilus assembly protein [Vibrio harveyi HY01] Length = 486 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 125/436 (28%), Positives = 211/436 (48%), Gaps = 23/436 (5%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 ++++ GK +S+ ++ L + + V + DP D++V ++L GK +G Sbjct: 16 LSVNAAPAQSGKVVSVAHHQSTQLMISGKAKKVTLGDPEVLDIIVLRSNELFLVGKKLGT 75 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 NV + G+ + ++ + D+ L+ L +F+ D +I V + VVL G+V T Q+ Sbjct: 76 TNVSVWDSRGRLIEQFNVEVTHDLNTLKSKLYQFLPDESIEVHSAQEKVVLRGLVSTQQN 135 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQI- 213 AV+++ETF + ++ + S V+NLL+I G QVTL+VT+AEV+R ++++ Sbjct: 136 MDTAVKIAETFAAGEAADEGEDDSKDDSMVINLLSIGGAQQVTLEVTVAEVQRTLVRRFD 195 Query: 214 ----GFQHSITGSSSGPSKSFAADFGGKFVSEGG--DFSVKGVL--DRFSFETVLHALER 265 FQ S + + D G ++ DF G F L + Sbjct: 196 SNFHFFQKSGDFTWGATTAGGGIDNIGPILNIPSVDDFGFLGSFIDSNTLFTFALDVARQ 255 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS Sbjct: 256 NGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNED--GITIDYKEYGVQLDFVPYILSD 313 Query: 326 GRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 RI L++ VSE +P R A TT+EL G TI +AGLL Sbjct: 314 KRINLKMNVNVSEIANSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLS 373 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 ++ + + +GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D + Sbjct: 374 ENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGFV 433 Query: 436 VEDDAKAFFFNRVNKI 451 +D + + + ++ Sbjct: 434 SPNDVEFYLLGKGAEL 449 >gi|167894387|ref|ZP_02481789.1| type II/III secretion system protein [Burkholderia pseudomallei 7894] Length = 426 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 130/440 (29%), Positives = 215/440 (48%), Gaps = 27/440 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +++ ++++P V V+DP ADV V +P+ +++ GK G + +G + Sbjct: 1 GPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANN 60 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +L ++++ D L+ L + + ++++ G V + D+ V+ + Sbjct: 61 RTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKP 120 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +L Q + ++N L +A QV L+V I EV R+I +Q+G S G+S Sbjct: 121 YLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNF 170 Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277 F +S G FSV G R+S + VL AL++ I LAEP L Sbjct: 171 VGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNL 230 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TAISGQ+ASF +GG+ +TGA ++ YGV L FTPTVL+ RI L+++ EVS Sbjct: 231 TAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVS 290 Query: 338 --EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 +P V G + P+ VR+ DTTVEL SG + + GLL+ + +P L+++P+ Sbjct: 291 EIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPV 350 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG LF + + ++TE+ + TP++V+P +L D + F R I Sbjct: 351 LGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGI-- 408 Query: 454 PKEASEVEGQNYKGAIGFIY 473 + + G GF+Y Sbjct: 409 --DPLGGDAPRLAGPAGFVY 426 >gi|28899193|ref|NP_798798.1| putative pilus assembly transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836824|ref|ZP_01989491.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810] gi|260361569|ref|ZP_05774596.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030] gi|260876726|ref|ZP_05889081.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034] gi|260898195|ref|ZP_05906691.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466] gi|260900397|ref|ZP_05908792.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037] gi|28807417|dbj|BAC60682.1| putative pilus assembly transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749970|gb|EDM60715.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810] gi|308089085|gb|EFO38780.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466] gi|308091468|gb|EFO41163.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034] gi|308109123|gb|EFO46663.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037] gi|308114031|gb|EFO51571.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030] gi|328474270|gb|EGF45075.1| pilus assembly protein CpaC [Vibrio parahaemolyticus 10329] Length = 487 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 125/437 (28%), Positives = 209/437 (47%), Gaps = 24/437 (5%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 +++ G+ +S+ ++ L + + V + DP D+VV ++L GK +G Sbjct: 16 LSVHAATAQSGRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNELFLIGKKLGT 75 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 NV + G+ + ++ + D+ L+ L +F+ D +I V + VVL G+V + Q+ Sbjct: 76 TNVSVWDSRGRLIEQFNVEVTHDLNTLKSKLFQFLPDESIEVHSAQEKVVLRGLVSSQQN 135 Query: 157 SQRAVELSETFL---SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 AV+++ETF + + A V+NLL+I G QVTL+VT+AEV+R ++++ Sbjct: 136 MDIAVKIAETFALGDAADEEDDNAKDDESSVINLLSIGGAQQVTLEVTVAEVQRSLVRRF 195 Query: 214 -----GFQHSITGSSSGPSKSFAADFGGKFVSEGG--DFSVKGVL--DRFSFETVLHALE 264 FQ S + + D G ++ DF G F L + Sbjct: 196 DSNFHFFQKSGDFTWGATTAGGGIDNIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNED--GITIDYKEYGVQLDFVPFILS 313 Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 RI L++ VSE +P R A TT+EL G TI +AGLL Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++ + + +GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D + Sbjct: 374 SENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRVTLPTDGF 433 Query: 435 SVEDDAKAFFFNRVNKI 451 +D + + + K+ Sbjct: 434 VAPNDVEFYLLGKGAKL 450 >gi|83312840|ref|YP_423104.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum magneticum AMB-1] gi|82947681|dbj|BAE52545.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum magneticum AMB-1] Length = 495 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 245/474 (51%), Gaps = 28/474 (5%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 + S A P + + + + + + + K I L +P V++V++ + Sbjct: 37 VVTLGSPSEAAPSPRPGTPQS----LRGLSSAAAESMQVPVGKSIDLPLPGAVKEVVIGN 92 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 ADV+V +P +++ G+ VGQ NV L+ G+ M +D+ + D ++ LR + + Sbjct: 93 SDIADVIVRTPHMVHITGRAVGQTNVFLMDRSGRVMRRIDLAVAIDSQAVKDALRAVLPE 152 Query: 134 SN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 I VE V+D++ L G V+ ++ A ++ F++ G K++N++ + Sbjct: 153 ERAITVEAVADSLYLSGSVKNDGAARDAKMVARRFVADDG----------KLVNMIRVVN 202 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------FGGKFVSEGGDFS 246 E QV L V +AE++R +LK++GF + S S P + + G S F Sbjct: 203 EQQVLLHVKVAEIQRTVLKELGFGLTANKSISLPGTASLSSFTTSSTVGLIDSSSTAIFG 262 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 V + + LE IRTL EP LTA+SG++A+ +GG+ VS++ G+ S Sbjct: 263 TATVTGLGALAANFNILENQGLIRTLVEPNLTAVSGETATMLAGGELPIP-VSTTNGSIS 321 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVE 361 V YGV+L FTP VL PGR+ L++ TEVS +P+++VR+A +TVE Sbjct: 322 VEFKPYGVLLSFTPVVLDPGRLSLKMSTEVSAIDTANKTAITTTISVPAFKVRRAGSTVE 381 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 LPSGG+I++AGLL++DI G+P L +P+LGALFR++ F R ETE+ + + ++++P Sbjct: 382 LPSGGSIMIAGLLQNDITANIAGLPGLMDLPVLGALFRSNAFQRNETELVVILSAYVIRP 441 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG-QNYKGAIGFIYK 474 V +LS P+D ++ D K F R+ Y + E +G G I + Sbjct: 442 VDQPNLSTPNDGFAPSSDLKRFLLGRLQDTYTTRGKGEPAAPPALQGPYGHIVQ 495 >gi|283852073|ref|ZP_06369347.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] gi|283572463|gb|EFC20449.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] Length = 527 Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats. Identities = 139/491 (28%), Positives = 215/491 (43%), Gaps = 84/491 (17%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 K+S+ + K +ILQ DV V V+ P AD V+ SPR +Y+ G+ G N+ L Sbjct: 40 STPKLSLTIGKSVILQSDADVSRVSVAQPEIADFVLLSPRQVYVTGRAPGVTNLTLWDKG 99 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 K D+ + DI L+ L + I V D + L G VR ++ ++A+ L+ Sbjct: 100 DKIRAVYDLDVAPDITRLKKMLHDVLPGEPGIEVRASQDAIALAGTVRDAENMKKALTLA 159 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 E + + KKV+NL+ + G QV L+V +AE+ + +L ++G + G Sbjct: 160 EVY------------APKKVVNLMAVGGVQQVMLEVRVAEMSKSVLNRMGINLNAIGD-- 205 Query: 225 GPSKSFAADFGGKFVSEGGD---------------FSVKGVLDRFSFE------------ 257 +FA G S G + KG SF+ Sbjct: 206 ---GNFAYTLIGGLTSVAGSMFNMDATQNVYQYITMTAKGADGNTSFDSSPIQLSYREFN 262 Query: 258 --------------------------------TVLHALERATAIRTLAEPTLTAISGQSA 285 VL L+ ++ LAEP L ++GQ+A Sbjct: 263 QPSNRATATMNQGTAVARWNTNWGGAGNTAMTAVLDVLKENGLVKILAEPNLVCLNGQTA 322 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VI 341 F +GGQ V S G TS+ D+GV L FTPT++ RI L++ EVS+ I Sbjct: 323 DFLAGGQIPVP-VPSGLGTTSIEWKDFGVGLKFTPTIVGGDRINLQVHPEVSDLDYAHAI 381 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + +P+ R+ TTVEL +G T +AG+LK++ + + P++ IPILG LF++S Sbjct: 382 QLQGSTIPAINTRRTSTTVELKNGQTFAVAGMLKEEARSTFDKYPVVGDIPILGNLFKSS 441 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE-- 459 +F +++TE+ I T L KP+ + +S P D DD + F R + A Sbjct: 442 QFQKDQTELVILITAHLAKPLDKKAVSLPTDSAHEPDDLEFFLGIRRDGGQATPAAGPLA 501 Query: 460 VEGQNYKGAIG 470 V G G G Sbjct: 502 VSGAALDGDFG 512 >gi|148976662|ref|ZP_01813349.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium SWAT-3] gi|145964013|gb|EDK29271.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium SWAT-3] Length = 456 Score = 329 bits (843), Expect = 7e-88, Method: Composition-based stats. Identities = 117/433 (27%), Positives = 204/433 (47%), Gaps = 27/433 (6%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + +K + + V + DP D+V+ ++L GK +G N++ G+ + + Sbjct: 1 MPHHKSTHVVLSGKASKVSLGDPEVLDIVILKSNEVFLIGKKLGATNLMAWDARGQLIES 60 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 ++I + D+ L+ L F+ D I V + ++L G + Q A+ ++ET+ + Sbjct: 61 INIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQISNQQKMNVAMRIAETYAAGQ 120 Query: 172 GRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQI-----GFQHSITG 221 ++ S S++ V+NL++I G QV L+VT+AEV+R ++++ FQ S + Sbjct: 121 AADETKESGSEQAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQTSGSN 180 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPT 276 S G + A G + + + G+L F F L ++ + LAEP Sbjct: 181 FSWGGASVPAGVLGATPIFDIPTSTDYGILGSFIDSNTLFTFALDVSKQNGVAKVLAEPN 240 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 LTA+SG A F +GG+ ++ +YGV L F PTVLS +I L + +V Sbjct: 241 LTALSGSKAEFLAGGEFPIPVP--DDDGITIEYKEYGVGLKFIPTVLSDQKINLNLAVDV 298 Query: 337 S----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 S +P +P R A +T+EL G TI +AGLL ++++ + + Sbjct: 299 SEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDISNKML 358 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + +PILG LF + + ETE+ I TP L KPV ++ P D + +D + + Sbjct: 359 GIGDVPILGQLFNSQEYVSGETELVILVTPRLAKPVDRSKVTLPTDAFVDPNDLEYYLLG 418 Query: 447 RVNKIYGPKEASE 459 R I P ++ + Sbjct: 419 RSAYIAEPSDSED 431 >gi|197295153|ref|YP_002153694.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|195944632|emb|CAR57236.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 644 Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats. Identities = 125/438 (28%), Positives = 216/438 (49%), Gaps = 18/438 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + + +++ L K +++ +P V++ + +P A + SP+T+Y+ G VG N+I+ Sbjct: 93 AVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIVQ 152 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G +D+ + D L+ +L + + + I V + T+VL G V + Q +Q+AV Sbjct: 153 GKSGAC-RVIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQAV 211 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +++ + +G V+N+LN+ QV L+V +AEV + ++ Q+G +I G Sbjct: 212 QIAHAYGDSAGDAAGGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQG 271 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + ++ S V + F A ++ LAEP L IS Sbjct: 272 GFGSWSGALVSNLLAGVASGA----VFNKANNRPFSIAADAQNTDNLVKILAEPNLVTIS 327 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GQ A+F +GG+ SS T ++ ++GV L FTPTVL+ GRI L++ EVSE Sbjct: 328 GQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSE 387 Query: 339 PVIG------VNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 N G +P R+A TTV++ G + + GL+KD+ + IP + Sbjct: 388 LSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGVG 447 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++P+LGALFR++ F ++ TE+ TP LVKP+ D++ P D +S ++ + + Sbjct: 448 EVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVYATGNME 507 Query: 450 KIYGPKEASEVEGQNYKG 467 G ++A Q G Sbjct: 508 GRGGVRKAGAQPMQPANG 525 >gi|78060314|ref|YP_366889.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383] gi|77964864|gb|ABB06245.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383] Length = 652 Score = 328 bits (842), Expect = 9e-88, Method: Composition-based stats. Identities = 124/427 (29%), Positives = 215/427 (50%), Gaps = 18/427 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ Sbjct: 93 AVRESTSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQ 152 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G +D+ + D L+ +L + + + I V + T+VL G V + +Q+A+ Sbjct: 153 GRSGAC-RVIDVAVGADAGGLQASLMQLMPNERDIHVSTAAGTIVLAGTVSSSMAAQQAM 211 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +++ + +G + V+N+LN+ QV L+V +AEV + ++ Q+G +I G Sbjct: 212 QIARAYGDSAGDPAGGGKAGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSALNIQG 271 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + ++ V+ G FS + F A ++ LAEP L IS Sbjct: 272 GFGSWSGALVSNLLAG-VATGIAFS---KANNKPFNLAADAQNTDNLVKILAEPNLVTIS 327 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EVSE Sbjct: 328 GQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLSNGRISLKVAPEVSE 387 Query: 339 PVIG------VNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 N G +P R+A TTV++ G T + GL+KD+ + +P + Sbjct: 388 LSQTGVTLSATNIGGTSILPLITTRRASTTVQMGDGETFAIGGLIKDNGTGALKALPGVG 447 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 +IP+LGAL R++ F ++ TE+ TP LVKP+ D+ P D +S ++ + + Sbjct: 448 EIPVLGALLRSTSFQQDRTELIFVITPHLVKPLQTADVPLPTDSFSKPNEVDVYATGNME 507 Query: 450 KIYGPKE 456 G ++ Sbjct: 508 GRGGVRK 514 >gi|325525578|gb|EGD03368.1| flp type pilus assembly protein [Burkholderia sp. TJI49] Length = 545 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 123/432 (28%), Positives = 214/432 (49%), Gaps = 18/432 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ Sbjct: 92 AVRESSSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQ 151 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G +D+ + D L+ +L++ + + I V + T+VL G V Q +Q+AV Sbjct: 152 GRSGAC-RVIDVAVGADAGGLQTSLQQLMPNERDIHVSTAAGTIVLAGSVSNSQAAQQAV 210 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 ++ + +G V+N+L++ QV L+V +AEV + ++ Q+G +I G Sbjct: 211 AIARAYGDSAGSGDAGGKPGSGVLNMLSVTSPQQVMLEVKVAEVSKTLINQLGSAFNIQG 270 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + ++ S +R F+ A ++ LAEP L IS Sbjct: 271 GFGSWSGALVSNLLAGVASGI----AVSKSNRRPFQIAADAQNTDNLVKILAEPNLVTIS 326 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GQ A+F +GG+ SS G + T ++GV L FTPTVL+ GRI L++ EVSE Sbjct: 327 GQEATFLAGGKIFIPVPQSSGGNATTITLQEEEFGVALKFTPTVLANGRISLKVAPEVSE 386 Query: 339 PVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 A +P R+A TTV++ G + + GL+KD++ + IP + Sbjct: 387 LSSTGVTLSATNVSGASILPLITTRRASTTVQMNDGESFAIGGLIKDNVTGALKAIPGVG 446 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++P+LGALFR++ F ++ TE+ TP LVKP+ + D+ P D +S ++A + + Sbjct: 447 EVPVLGALFRSTSFQQDRTELIFLITPHLVKPMQIADVPLPTDSFSKPNEADVYATGNME 506 Query: 450 KIYGPKEASEVE 461 G + Sbjct: 507 GRRGVRRQGAEA 518 >gi|167648152|ref|YP_001685815.1| type II and III secretion system protein [Caulobacter sp. K31] gi|167350582|gb|ABZ73317.1| type II and III secretion system protein [Caulobacter sp. K31] Length = 545 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 155/518 (29%), Positives = 254/518 (49%), Gaps = 76/518 (14%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P + P + V+ I D+ + +++ K I+++PVDV+D+LV++P AD Sbjct: 41 APRIIDTPTLAPPADQVLRI-DLTASGAQSLTLARGKSAIVELPVDVRDMLVTNPAVADA 99 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V+ PR +Y+ G G + + G+++L+L I +++D + L+ TLRR + +NI V+ Sbjct: 100 VLRGPRRIYVLGMGQGVTDAVFFDAAGRKILSLAIRVDQDSSALQDTLRRVLPAANIEVQ 159 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + D+V+L GMV + +S A +++ F+ + V+N+L IAG+DQV LK Sbjct: 160 SIRDSVILTGMVANVGESTMASQIAARFVDK----------PDNVLNMLTIAGKDQVMLK 209 Query: 200 VTIAEVRRDILKQIGFQHSI-------TGSSSGPSKSFAADFG----------------- 235 V I EV+R+I+KQ+G S T + G S S+ + Sbjct: 210 VRIVEVQRNIIKQLGVDSSAVLGQLGETQYAFGLSPSYGINGKLLGGLTGGYKADTTKQP 269 Query: 236 ----------------------GKFVSEGGDFSVKGVLDRFSFETV---LHALERATAIR 270 S G ++ + + A ER +R Sbjct: 270 TLQVPCNAALPDGAKCLQIVRDNSVYSNGDTATITDTAGSAGLNSAKGMIQAFERVGLVR 329 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 TLAEP LT +SG++ F GG+ +TG ++ YGV L +TP VLS GRI L Sbjct: 330 TLAEPNLTVVSGEAGKFLVGGEFPVPVGQDATGKVTIEFKPYGVGLGYTPIVLSGGRISL 389 Query: 331 RIQTEVSEPVI-------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 ++ TEVSE + +P VR+A+TTVELPSGG++++AGLL+ Sbjct: 390 KLSTEVSELSSLGAFTLTTSTGTSTSSNLTVPGLTVRRAETTVELPSGGSLMIAGLLQQQ 449 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +Q + +P ++ +PILGALFR+ + ETE+ + TP++V P ++L P D Sbjct: 450 TRQNIDALPGMTSLPILGALFRSRDYLNGETELVVIITPYIVDPTKPQNLQTPADGLQTA 509 Query: 438 DDAKAFFFNRVNK-IYGPKEASEVEGQNYKGAIGFIYK 474 D R+NK + P A+ G+ Y+G +G++ + Sbjct: 510 SDMSTALLGRLNKVVKAPVGAN--SGRAYQGPVGYVIE 545 >gi|224824213|ref|ZP_03697321.1| type II and III secretion system protein [Lutiella nitroferrum 2002] gi|224603632|gb|EEG09807.1| type II and III secretion system protein [Lutiella nitroferrum 2002] Length = 520 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 144/514 (28%), Positives = 239/514 (46%), Gaps = 68/514 (13%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72 + L +S A P + A I +++ + K L+ PV + +L+ Sbjct: 23 GMLLLASYSQAATTTPKRLAATPSTVAPCNAIESAPLVNVTVGKSFRLKTPVPISRILLG 82 Query: 73 DPT-----------------------------KADV--VVHSPRTMYLFGKNVGQANVIL 101 +P ADV ++ SP +YL GK+VG N+IL Sbjct: 83 NPEGSQAAQPKESTDANADKGKPSAGGSTKSGVADVDVILLSPSEIYLLGKSVGSTNIIL 142 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFI--ADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 +G +G+ L +D+ + D A L+ +L + + +N++V SD++VL G V R Sbjct: 143 LGRNGQCTL-VDVAVGADTASLQASLNQLLSPGANNVKVSAASDSLVLTGTVADSAKLDR 201 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A+ L+E + +S KV+N++++ QV L+V IAE+ + +L ++G + Sbjct: 202 AMTLAEAYAGKS-----------KVINMMSVDAPQQVLLEVKIAEISKKLLDKLGVNIAG 250 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G + S+ + F + G + G+ D + + A ++ LAEP L A Sbjct: 251 ILNHGGWTYSWNSLFANDPL---GKALLSGINDSATRAFQIDAQHDDGLLKVLAEPNLMA 307 Query: 280 ISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ SF +GG+ ++T ++ ++GV L FTPTVL GRI L++ E Sbjct: 308 ISGQEGSFLAGGKIFIPVAQNNTNNGGSTITLEEKEFGVALRFTPTVLDGGRINLKVAPE 367 Query: 336 VS---EPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VS +G++A + PS+ R+A TTV+L G + + GLLK+++ P Sbjct: 368 VSELNPEGVGISAIGVAGKSILPSFTTRRAATTVQLHDGQSFAIGGLLKNNVTTNISAFP 427 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 L +IPILGALFR++ F +++E+ TP LVKP+ D P D+Y + A+ F Sbjct: 428 FLGEIPILGALFRSTSFQTDKSELVFVVTPRLVKPLPP-DYKLPTDNYIPPNRAELFLGG 486 Query: 447 RVNKIY------GPKEASEVEGQNYKGAIGFIYK 474 R+ EAS + + GF K Sbjct: 487 RMEGRQPEPSASKASEASPQPEASTQAPSGFEVK 520 >gi|317154605|ref|YP_004122653.1| type II and III secretion system protein [Desulfovibrio aespoeensis Aspo-2] gi|316944856|gb|ADU63907.1| type II and III secretion system protein [Desulfovibrio aespoeensis Aspo-2] Length = 478 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 134/471 (28%), Positives = 222/471 (47%), Gaps = 32/471 (6%) Query: 10 TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69 + + FL + +V+ L P+ A+ V+N + IS+ ++K IL V V Sbjct: 8 SFLLAFLMALAVTVSGLVPLAVADVDVLNTEAPGV-----ISLVVSKSTILTADAPVSRV 62 Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 ++ P A VVV SP +Y+ G+ +G + L G+ D++I D+ L+ + Sbjct: 63 SLAQPETASVVVLSPTQIYITGRKLGTTTLTLW-SGGQVSGVYDLVITPDVTRLKRMIHE 121 Query: 130 FIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + + +++V +++ L G V D + L+E + KV+NLL Sbjct: 122 ILPRERSVQVLSSGESITLSGSVSNTGDLTSVLSLAEA------------EAPGKVVNLL 169 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAADFGGKFV--SE 241 + G QV L+V +AE+ R LK++G + T S+ + S A+ G + ++ Sbjct: 170 RVDGVQQVMLQVRVAEMSRTALKRMGINLAATFSNFTVYSFLNNLSSLANTGSNVIELTD 229 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + V+ + +L AL+ R LAEP LT +SG+SA F GG+ + Sbjct: 230 KINSVVRYNSGSTNVVGMLDALKAHGLARLLAEPNLTCVSGESADFLVGGEIPIP-KPGA 288 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKAD 357 G S+ +GV L FTPTVLS G I L + EVSE ++P+ RKA Sbjct: 289 LGTVSIEFKPFGVGLEFTPTVLSSGAINLHVSPEVSELDYTNALRYQGYEIPAISTRKAS 348 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V+L G + +AGL+ + +++ P+L IP+LG LFR+S + + +TE+ I T Sbjct: 349 TVVDLADGQSFAIAGLISESLKENNHRFPVLGDIPVLGTLFRSSDYQKNKTELVIIVTAH 408 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 LVKP+ M + P D + D + + + G A+ V Q G+ Sbjct: 409 LVKPLDMAGQTLPGDGFKEPTDYEFYMLGLLEG-QGASPAAMVGAQARSGS 458 >gi|257141104|ref|ZP_05589366.1| type II and III secretion system protein [Burkholderia thailandensis E264] Length = 826 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 127/430 (29%), Positives = 220/430 (51%), Gaps = 21/430 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 +G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 AMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSG---RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +++ + ++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 214 AIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----G 269 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G S+ ++ G+ ++ + A ++ LAEP L Sbjct: 270 SAVNLQGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRLV 329 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS TS T ++GV L FTPTVLS GRI L++ E Sbjct: 330 TISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAPE 389 Query: 336 VSEPVIG------VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N G + P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 VSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKALP 449 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A + Sbjct: 450 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYATG 509 Query: 447 RVNKIYGPKE 456 + G ++ Sbjct: 510 NMEGRGGLRQ 519 >gi|218887827|ref|YP_002437148.1| type II and III secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758781|gb|ACL09680.1| type II and III secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 493 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 208/464 (44%), Gaps = 31/464 (6%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 + R + A + + + + + K ++++ Sbjct: 1 MSRPASLTRAAGRLVGTVHAAACAVLATVLLLAAAAQAQADATPQAVPLAVGKSMVVRTA 60 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V +SD A VVV SP+ +Y+ GK G A + L G DI + D+A L Sbjct: 61 QPAARVSMSDEAIAGVVVLSPQQVYVTGKKAGGATLTLWNGAGAITQVYDIQVTPDLAQL 120 Query: 124 EMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + L R + D +I V V +++ L G VR+ A+++++ + + Sbjct: 121 KEMLHRVLPDEKDIMVMAVGESITLAGTVRSAAGMTTALDVAKMY------------APD 168 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-------------KS 229 KV NL+ + G QV L+V +AE+R+ +L+++G + ++ Sbjct: 169 KVTNLMQVGGVHQVLLEVKVAEMRKSVLERLGIDLTYAWNNDFAFGMLNQLFTLDSQKGV 228 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G VS + R S L L++ ++ LAEPTL SG++A F + Sbjct: 229 VGVGPTGAVVSPNVTGMFRATSGRASLMGFLDVLKQNGLVKVLAEPTLICRSGENADFLA 288 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNA 345 GG+ V G ++ YGV L FTPTV+S I +R+ EVSE VI +N Sbjct: 289 GGEIPIP-VPQGLGTVAIEFKKYGVTLGFTPTVVSDKLISMRVSPEVSELDYSNVIEING 347 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ R+A TTVEL G + +AGLL+D++++ + P+L +P+LG LFR+S + + Sbjct: 348 FTIPAISTRRAATTVELADGQSFAVAGLLRDEVRENIKKYPVLGDVPLLGTLFRSSNWQK 407 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ETE+ I TP L KP+ P D + + + F ++ Sbjct: 408 NETELVIIVTPRLAKPLDGATAKLPTDGFREPSEFEFFLQGKME 451 >gi|107028248|ref|YP_625343.1| type II and III secretion system protein [Burkholderia cenocepacia AU 1054] gi|116687159|ref|YP_840406.1| type II and III secretion system protein [Burkholderia cenocepacia HI2424] gi|105897412|gb|ABF80370.1| type II and III secretion system protein [Burkholderia cenocepacia AU 1054] gi|116652874|gb|ABK13513.1| type II and III secretion system protein [Burkholderia cenocepacia HI2424] Length = 642 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 122/438 (27%), Positives = 214/438 (48%), Gaps = 19/438 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + + +++ L K +++ +P V++ + +P A + SP+T+Y+ G VG N+I+ Sbjct: 93 AVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIVQ 152 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G +D+ + D L+ +L + + + I V + T+VL G V + Q +Q+AV Sbjct: 153 GRSGAC-RVIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQAV 211 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +++ + +G + V+N+LN+ QV L+V +AEV + ++ Q+G +I G Sbjct: 212 QIAHAYGDSAG-DAAGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQG 270 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + ++ S V + F A ++ LAEP L IS Sbjct: 271 GFGSWSGALVSNLLAGVASGA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTIS 326 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GQ A+F +GG+ S + ++ ++GV L FTPTVL+ GRI L++ EVSE Sbjct: 327 GQEATFLAGGKIFIPIPQSGSNGVSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSE 386 Query: 339 PVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 +P R+A TTV++ G + + GL+KD+ + IP + Sbjct: 387 LSQTGVTLSASNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGALKAIPGVG 446 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++P+LGALFR++ F ++ TE+ TP LVKP+ D++ P D +S ++ F + Sbjct: 447 EVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVFATGNME 506 Query: 450 KIYGPKEASEVEGQNYKG 467 G ++A Q G Sbjct: 507 GRGGVRKAGAQPMQPANG 524 >gi|170734868|ref|YP_001773982.1| type II and III secretion system protein [Burkholderia cenocepacia MC0-3] gi|169820906|gb|ACA95487.1| type II and III secretion system protein [Burkholderia cenocepacia MC0-3] Length = 646 Score = 326 bits (835), Expect = 6e-87, Method: Composition-based stats. Identities = 122/438 (27%), Positives = 214/438 (48%), Gaps = 19/438 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + + +++ L K +++ +P V++ + +P A + SP+T+Y+ G VG N+I+ Sbjct: 93 AVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIVQ 152 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G +D+ + D L+ +L + + + I V + T+VL G V + Q +Q+AV Sbjct: 153 GRSGAC-RVIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQAV 211 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +++ + +G + V+N+LN+ QV L+V +AEV + ++ Q+G +I G Sbjct: 212 QIAHAYGDSAG-DAAGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQG 270 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + ++ S V + F A ++ LAEP L IS Sbjct: 271 GFGSWSGALVSNLLAGVASGA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTIS 326 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GQ A+F +GG+ S + ++ ++GV L FTPTVL+ GRI L++ EVSE Sbjct: 327 GQEATFLAGGKIFIPIPQSGSNGVSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSE 386 Query: 339 PVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 +P R+A TTV++ G + + GL+KD+ + IP + Sbjct: 387 LSQTGVTLSASNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGALKAIPGVG 446 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++P+LGALFR++ F ++ TE+ TP LVKP+ D++ P D +S ++ F + Sbjct: 447 EVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVFATGNME 506 Query: 450 KIYGPKEASEVEGQNYKG 467 G ++A Q G Sbjct: 507 GRGGVRKAGAQPMQPANG 524 >gi|253996769|ref|YP_003048833.1| type II and III secretion system protein [Methylotenera mobilis JLW8] gi|253983448|gb|ACT48306.1| type II and III secretion system protein [Methylotenera mobilis JLW8] Length = 513 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 144/489 (29%), Positives = 235/489 (48%), Gaps = 35/489 (7%) Query: 1 MRYLQRTFFT-MMSIFLFSSNPSVAKLPPIKEAN-----------AAVINISDVEIGKGK 48 +RY M+ + L S P A P N AA S EI Sbjct: 16 LRYCVSNLLAAMLGVTLLSIAPLHAAEPQANMQNILVAAVTPKKVAARPTPSSTEIVPSV 75 Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++S+G + ++ L V++Q V V D V V SPR + L K +G VI++ G+ Sbjct: 76 ELSLGQSHLVRLPAGVNLQRVKVDDDKIVQVDVTSPREVVLHAKTIGSTMVIILDKSGQS 135 Query: 109 MLNLDILI-----ERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVE 162 +D+ + D A L+ L++ + + I+V ++++VL G V + +A+ Sbjct: 136 -AVMDVRVVAAATAMDAASLQTKLQQIMPNEKGIKVSTAAESLVLSGTVSDAVKADKAMA 194 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 L+E + + KKV+N+L +A QV L+V +AEV +++L ++G + S Sbjct: 195 LAEAYGGKDK--------DKKVINMLQVAAPQQVMLEVKMAEVSKNLLDKLGASFGASRS 246 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + G + + A+ F ++ + + + + A + ++ LAEP + AISG Sbjct: 247 NGGVAYAIASGFLSLTGADPLSPGGLLTITKGNTAIKVDAENKDGVVKILAEPNIIAISG 306 Query: 283 QSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 Q SF +GG+ S+TG ++ D+GV L FTPTVL G I LR+ EVSE Sbjct: 307 QEGSFLAGGKIFIPVPQSNTGGGSNVLTLEERDFGVGLKFTPTVLEEGMINLRVAPEVSE 366 Query: 339 PVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 G V PS+ VR+ TTV+L G + +AGL+K+++ + P+L +IPILG Sbjct: 367 LNQGGTTVGGSVFPSFTVRRVATTVQLRDGQSFAIAGLIKNNVTENVRRFPILGEIPILG 426 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 ALFR+S F ++TE+ TP LVKP+ D + P D ++ A+ F ++ Sbjct: 427 ALFRSSSFQEDKTELLFVITPRLVKPLPP-DFALPTDKFTPPSKAEFFLNGKLEGKPAEP 485 Query: 456 EASEVEGQN 464 E Q+ Sbjct: 486 ATEESPAQS 494 >gi|46201037|ref|ZP_00207939.1| COG4964: Flp pilus assembly protein, secretin CpaC [Magnetospirillum magnetotacticum MS-1] Length = 480 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 146/472 (30%), Positives = 241/472 (51%), Gaps = 25/472 (5%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 P + ++ + + + + K + L +P V++V++ + Sbjct: 20 MVITLGAPSGPGQAQRAGTPRSLLGATAASAESMQVPVGKSVDLTLPGAVREVVIGNSDI 79 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN- 135 ADV+V SP +++ G+ VGQ NV L+ G+ M +D+ + D + LR + D Sbjct: 80 ADVMVRSPNLVHITGRAVGQTNVFLVDRAGRVMRRIDLNVSIDSQAVRDALRAVLPDERA 139 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 I VE V+D++ L G V+ ++ A L+ F+++ K++NLL + E Q Sbjct: 140 INVEAVADSLYLSGSVKNDAAARDAKMLARRFVAEDA----------KLVNLLRVVNEQQ 189 Query: 196 VTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 V L V +AE++R +LK++GF + I S G ++ G S F Sbjct: 190 VLLHVKVAEIQRTVLKELGFGLTANKGIPLIGSSVLGSGSKTSSTVGLIDSSSTAIFGTA 249 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + + L+ LE IRTL EP LTA+SG++A+ +GG+ +S + GA SV Sbjct: 250 TITGIGALAANLNILENQGLIRTLVEPNLTAVSGETATMLAGGELPIP-ISQTNGAVSVE 308 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELP 363 YGV+L FTPTVL PGR+ L++ TEVS ++ +P+++VR+A +TVELP Sbjct: 309 FKPYGVLLSFTPTVLDPGRLSLKMSTEVSAIDNNNKTAISSSISVPAFKVRRAGSTVELP 368 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SGG+I++AGLL++DI G+P L +P+LG LFR++ F R ETE+ + + ++V+PV Sbjct: 369 SGGSIMIAGLLQNDITSNITGLPGLMDLPVLGLLFRSNAFQRNETELVVILSAYVVRPVE 428 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG-QNYKGAIGFIYK 474 L P+D ++ D K F R+ Y + + +G G I + Sbjct: 429 QPVLGTPNDGFAPSSDLKRFLLGRLQDTYTKRSRELPATPPSLQGPYGHIVQ 480 >gi|307300715|ref|ZP_07580490.1| type II and III secretion system protein [Sinorhizobium meliloti BL225C] gi|306904249|gb|EFN34834.1| type II and III secretion system protein [Sinorhizobium meliloti BL225C] Length = 466 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 222/468 (47%), Gaps = 24/468 (5%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK--GKKISIGLNKVIILQ 61 + R+ ++ + F F VA I + A N VEI + I + K + ++ Sbjct: 1 MTRSRGSLFAFFCFV----VALCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIR 56 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 ++++ DP A V + R+ Y+ G +G +V + + + +DI + D Sbjct: 57 AVQRFDEIVIGDPEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTK 116 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L T+R+ + S+++V + +VL G + +A +++ F Sbjct: 117 LLSSTIRQSVPGSSVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD----------- 165 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++V+N + I QV L V E+ RD+ K++G Q S + S S F + + Sbjct: 166 EEVINSIKITSSQQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSPRATSNTP 225 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + +S + + ALE R LAEP L A SG+++SF +GG+ +S Sbjct: 226 AGSLIGSLIGEGYSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIP-ISEQ 284 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKAD 357 G +V+ +GV L FTPTVLS G I L I+ EVS V +P + VR+A Sbjct: 285 DGTITVSYKKFGVGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRAR 344 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T+V+L SG + ++AGLL+ + + + +P L ++PILGALF + + R ET++ I TP Sbjct: 345 TSVDLKSGQSFMIAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPH 404 Query: 418 LVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 LVKP+ + ++ P D +A+ FF ++++ Q Sbjct: 405 LVKPIDPLKKVASPSDRTKRPTEAE-FFLGNIDEVEVNGRGRSASRQA 451 >gi|114799376|ref|YP_761691.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444] gi|114739550|gb|ABI77675.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444] Length = 535 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 151/540 (27%), Positives = 259/540 (47%), Gaps = 77/540 (14%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 RT + + + P+ L + +++++G++K +I+ + Sbjct: 2 RTIKALTCAAIVAILPAPFALAQTIPNGMGTSITKPGDQAVSRRVTLGVDKSMIVDLEAP 61 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 DV++S+P AD VV + + + G GQ N ++ G +L+L+I++E D+A LE Sbjct: 62 AADVVISNPEIADAVVQTAQRIIFRGIKFGQTNALIFDRAGNTLLDLNIMVETDLAALEE 121 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 T+ R I D+ +++E + +V+L GMV + S + +L + F +S A +++ Sbjct: 122 TISRHIPDARVKIESFNGSVILTGMVDNLSQSDQVSQLVKAFFPES-----AGGGELQIV 176 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------------------- 218 N+LN+ DQV L+V I E++R ++KQ+G S Sbjct: 177 NMLNVNAADQVMLEVRIVEMQRSVIKQLGINLSGATSFGELANQTLQQVFQGGLPLFFDP 236 Query: 219 -------------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---- 255 SS+ S S ++ F + + GG G + + Sbjct: 237 DSGEYNTTGQGTAVEMLQPAGPSSNTISGSASSGFNVQGQALGGISLETGYTNYNNGRLQ 296 Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + A+ER +RTLAEP + A+SG+SA F +GG+ + G +V YG Sbjct: 297 SSIGAAIDAMERVGIVRTLAEPNIVAMSGESAKFLAGGEFPVPVGQNQNGQITVEFKPYG 356 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG-------------------VNAGDMPSYRVR 354 V L FTP VLS GRI L++ TEVSE + +P+ VR Sbjct: 357 VGLAFTPVVLSEGRISLKVSTEVSELTSQGAFQGAAQTITDGDGNTTIIQGATLPALSVR 416 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +A++ VELPSGG++++AGL+ +Q + +P L K+PILG+LF++ F EETE+ + Sbjct: 417 RAESVVELPSGGSMMMAGLISVKDRQTIDQLPGLKKLPILGSLFQSRDFLSEETELVVMV 476 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 TP+LV + P D Y+ DAK FF ++N+ YG ++ + ++ +Y+ +GF+ + Sbjct: 477 TPYLVGATNKASMVTPADGYANASDAKTIFFGKLNETYG-RDGAPIKPDDYRAPVGFMEE 535 >gi|302343419|ref|YP_003807948.1| type II and III secretion system protein [Desulfarculus baarsii DSM 2075] gi|301640032|gb|ADK85354.1| type II and III secretion system protein [Desulfarculus baarsii DSM 2075] Length = 466 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 119/476 (25%), Positives = 198/476 (41%), Gaps = 37/476 (7%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 S +A I A + E G+ + + ++ +P ++ V V+D T Sbjct: 1 MSGFCRLAVAALIVAFAVATPASARAEARTGR-LEVAAGHSRLVDLPAPLKRVSVADETV 59 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 ADV+V +PR +Y+ G+ G N+ + + + + + RD L+ R + I Sbjct: 60 ADVLVINPRQIYVNGRKPGNTNITVWDRAERVIAAYAVGVGRDYTRLKAAFARVLPGEAI 119 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 V + +VL G V + ++A ++ F ++V NLL + + QV Sbjct: 120 EVHELEGALVLAGSVSSESAREKAESIARLFEK------------ERVSNLLEVVDQKQV 167 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFV----------SEGGD 244 LK+ AEV R K++ + +F + G + Sbjct: 168 LLKLRFAEVNRQAAKRMNVNLGYWDPARPGNIFFTFLDNMTGPPSIDYSKGSIEFDLSAN 227 Query: 245 FSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G L+ + L L++ + LAEP L +SG+ A+F +GG+ Sbjct: 228 VGAWGGLNDSGRQYMAFLDILKQNGLAKILAEPNLVCVSGKKANFLAGGEFPIPVPGRD- 286 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADT 358 T++ YGV L F P VL G+I L ++ EVSE P + + +P R+A T Sbjct: 287 -YTAIVFKKYGVQLTFLPKVLPNGKISLEVEPEVSELDYSPGVVTDGFVVPGLTTRRAST 345 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +EL G +AGLLK D+ + P L +PILGALFR+S++ ETE+ I TP + Sbjct: 346 QLELGDGQGFAIAGLLKQDVTRSVSKWPFLGDLPILGALFRSSQYRNRETELLIVVTPHI 405 Query: 419 VKPVA-MRDLSRPDDHYSVEDDAKAFFFNRV---NKIYGPKEASEVEGQNYKGAIG 470 V+P D + DD + + + ++ G A +G G Sbjct: 406 VRPGDKTPDPLIGPRDFDDPDDMDFYLWGKTGGDDEPPGRAGAKAERSMEMEGRFG 461 >gi|193782542|ref|NP_435332.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021] gi|307319126|ref|ZP_07598556.1| type II and III secretion system protein [Sinorhizobium meliloti AK83] gi|193072997|gb|AAK64744.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021] gi|306895233|gb|EFN25989.1| type II and III secretion system protein [Sinorhizobium meliloti AK83] Length = 466 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 222/468 (47%), Gaps = 24/468 (5%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK--GKKISIGLNKVIILQ 61 + R+ ++ + F F VA I + A N VEI + I + K + ++ Sbjct: 1 MTRSRGSLFAFFCFV----VALCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIR 56 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 ++++ DP A V + R+ Y+ G +G +V + + + +DI + D Sbjct: 57 AVQRFDEIVIGDPEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTK 116 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L T+R+ + S+++V + +VL G + +A +++ F Sbjct: 117 LLSSTIRQSVPGSSVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD----------- 165 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++V+N + I QV L V E+ RD+ K++G Q S + S S F + + Sbjct: 166 EEVINSIKITSSQQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSPRATSNTP 225 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + +S + + ALE R LAEP L A SG+++SF +GG+ +S Sbjct: 226 AGSLIGSLIGEGYSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIP-ISEQ 284 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKAD 357 G +V+ +GV L FTPTVLS G I L I+ EVS V +P + VR+A Sbjct: 285 DGTITVSYKKFGVGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRAR 344 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T+V+L SG + ++AGLL+ + + + +P L ++PILGALF + + R ET++ I TP Sbjct: 345 TSVDLKSGQSFMIAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPH 404 Query: 418 LVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 LVKP+ + ++ P D +A+ FF ++++ Q Sbjct: 405 LVKPIDPLKKVASPSDRTKRPTEAE-FFLGNIDEVEVNGRGRSASRQA 451 >gi|16127175|ref|NP_421739.1| pilus assembly protein CpaC [Caulobacter crescentus CB15] gi|221235976|ref|YP_002518413.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus NA1000] gi|7208425|gb|AAF40192.1|AF229646_4 CpaC [Caulobacter crescentus CB15] gi|13424571|gb|AAK24907.1| pilus assembly protein CpaC [Caulobacter crescentus CB15] gi|220965149|gb|ACL96505.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus NA1000] Length = 560 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 145/502 (28%), Positives = 242/502 (48%), Gaps = 70/502 (13%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A V I + + K I+++P +V+D+LV++P AD V+ R +Y+ G Sbjct: 70 AEDQVARIVMTADQTAATLELAKGKSAIVELPSEVRDLLVTNPQIADAVLRDKRRIYIVG 129 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G + G+++L+L I + + + L L + + D+ I V + D+VVL G V Sbjct: 130 LAEGTTDAAFFDTAGRRILSLSIRVSQPVDQLAAMLGKILPDAKITVSPIRDSVVLSGTV 189 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 RT +++ A ++ F+ S +KV+N++++AG+DQV L+V I EV+R+++K Sbjct: 190 RTASEAESAARIAAQFVG----------SPEKVLNMISVAGKDQVMLQVRIVEVQRNVIK 239 Query: 212 QIGFQ--------------------HSITGS----------------------SSGPSKS 229 Q+G + + GS +GP + Sbjct: 240 QLGVDLNAVIGQLGETQYTFGMAPGYGVNGSLLGGVTGGYKMDTTKQPVMQTPCTGPGWT 299 Query: 230 FAA-----DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + GG S G S + ++ A ER +RTLAEP L A+SG+S Sbjct: 300 AGSLCPVVARGGGNSDTATIQSTAGDPGLNSAKGMIQAFERVGLVRTLAEPNLAAVSGES 359 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341 F GG+ T S ++G ++ YGV L +TP VLS GRI L++ TEVSE Sbjct: 360 GKFLVGGEFPVPTGSDTSGKVTIEFKPYGVGLGYTPVVLSGGRISLKLSTEVSELSSLGA 419 Query: 342 ---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 G +P VR+ ++TVELPSGG+++LAGLL+ ++ + +P ++ +P Sbjct: 420 FSMSTGTSSGSTNLTVPGLSVRRVESTVELPSGGSLMLAGLLQQTTKETIDSLPGMTSMP 479 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 ILG+LFR+ F +TE+ + TP+++ P ++L P D D R+NK+ Sbjct: 480 ILGSLFRSRDFLNNQTELVVIITPYIIDPTRPQNLQTPADGLQFASDMGTVLLGRLNKVV 539 Query: 453 GPKEASEVEGQNYKGAIGFIYK 474 A G+ Y+G +G++ + Sbjct: 540 KAP-AGANAGRAYQGPVGYVIE 560 >gi|302381756|ref|YP_003817579.1| type II and III secretion system protein [Brevundimonas subvibrioides ATCC 15264] gi|302192384|gb|ADK99955.1| type II and III secretion system protein [Brevundimonas subvibrioides ATCC 15264] Length = 520 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 150/508 (29%), Positives = 248/508 (48%), Gaps = 68/508 (13%) Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84 LP A + + + I++ + +P D +DV+VS+P A+ VHSP Sbjct: 23 TLPSAVLAQDHAGSQTVAAGSGPRLINLPRGTSFAVDLPADARDVIVSNPAVAEANVHSP 82 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 R + + G G+ + + + G+ +L L + ++ + L+ TL R + + E V+D+ Sbjct: 83 RRITVIGIAPGETDAVFLDAAGRSILTLRVRVDAGVTALQDTLSRVAPGAQVHAEAVNDS 142 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 +VL G+V + S++ +++ F+ S+ +KV+N+L IAG DQVTLKV I E Sbjct: 143 IVLTGLVTSAAQSEQVAQVARAFV----------SAPEKVLNMLTIAGSDQVTLKVRIIE 192 Query: 205 VRRDILKQIGFQHSITGSSSGPSK---SFAADFGGKFVSEGG------------------ 243 V+R+ +KQ+GF + G ++ S AA FG GG Sbjct: 193 VQRNAIKQLGFDTAAALGRVGDTQFLLSQAASFGVNGSLLGGISAGVSRNTTQNFQLQGP 252 Query: 244 -----------DFSVKGVLDRFSFE-----------------TVLHALERATAIRTLAEP 275 F+V G D +++ ++ A ER IRTLAEP Sbjct: 253 CGPGFPADSLCPFTVDGPEDASNWDTAQPGTGPGSDDLNKGNAMIKAFERVGLIRTLAEP 312 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 LT+++G+SASF +GG+ T G ++ YGV L F P VLS GRI L+I E Sbjct: 313 NLTSVNGESASFLAGGEFPVPTGRDRDGNVTIEFKPYGVSLGFRPIVLSEGRISLQISAE 372 Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE A ++ VR+ TVE+PSGG++++AGLL++ +Q + +P Sbjct: 373 VSELTQTGGITLGAGTSTALNIAGLNVRRVQNTVEIPSGGSMMIAGLLQESTRQAIDSLP 432 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 L +P+LG LFR+ + ETE+ + P++V P + L P D + DA+ FF Sbjct: 433 GLGGLPVLGQLFRSRDYLSGETELVVIVEPYIVTPTSPNRLQTPADGLRIATDAQTIFFG 492 Query: 447 RVNKIYGPKEASEVEGQNYKGAIGFIYK 474 ++N+ YG ++ ++G +G++ + Sbjct: 493 QLNQAYGSPAPTDTASAGWQGPVGYVIE 520 >gi|110632971|ref|YP_673179.1| type II and III secretion system protein [Mesorhizobium sp. BNC1] gi|110283955|gb|ABG62014.1| type II and III secretion system protein [Chelativorans sp. BNC1] Length = 464 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 128/470 (27%), Positives = 221/470 (47%), Gaps = 25/470 (5%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 + L R F + ++ F ++A + V + K I + K + ++ Sbjct: 10 KRLTRYVFAVCALAFFGCAFGT-------MDSSANGDSIQVSVAKDSAIRVARGKPLTVE 62 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 + ++++ DP A + + + Y+ G+ +G + L + + D+ + D Sbjct: 63 IAEAFDEIVIGDPEIATINPLTDHSFYVLGQGLGTTGIALYDESKRLIGTFDVEVTLDTK 122 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L T+R+ + SNI+V + +VL G +++A +++ F Sbjct: 123 MLAGTIRQSVPGSNIKVTSANGRIVLSGSAPDAVAAEKASQIAARFAGD----------- 171 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V+N ++I QV L V E+ R + K++G + S +SG SF +D + Sbjct: 172 EDVINTIDITSSQQVQLNVRFVEINRAVGKELGTKISAAYVTSGGGISFNSDPRASSNTP 231 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 GD V D FS + + ALE R LAEP L A SG++ASF +GG+ VS Sbjct: 232 AGDLIGGLVSDGFSIDVAIEALEDRGVARRLAEPNLIARSGETASFLAGGEFPIP-VSEE 290 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKAD 357 GA +V+ +GV L+FTPTVLS G I L I+ EVS V +P + VR+A Sbjct: 291 NGAVTVSYKKFGVGLNFTPTVLSDGLIALDIEPEVSSIDTTSSYRVGNIAIPGFTVRRAR 350 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T+++L SG + ++AGLL+ + + +P L ++P+LGALF + + R ET++ I TP Sbjct: 351 TSIDLRSGQSFMMAGLLQSQNEINTQRVPGLGQLPVLGALFSSKAYQRRETDLVIIVTPH 410 Query: 418 LVKPVAMRD-LSRPDDHYSVEDDAKAFFFNRVN-KIYGPKEASEVEGQNY 465 LV P+ + ++ P D D + F N ++ A+ ++ Sbjct: 411 LVSPIPPGNKVATPADRTKPARDGEVFLGNVEEVRLQQRTAANAPSAGHF 460 >gi|326388864|ref|ZP_08210446.1| type II and III secretion system protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206464|gb|EGD57299.1| type II and III secretion system protein [Novosphingobium nitrogenifigens DSM 19370] Length = 565 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 132/462 (28%), Positives = 219/462 (47%), Gaps = 38/462 (8%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 + L ++ P + P ++ + ++I + + ++ +P ++ DV V Sbjct: 38 LPAALSAATPHMKAKPRALAVLHTTPPMTPGVTAPARSLAISIGRGELVTLPGNMTDVFV 97 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 ++ ADV V S +Y+FGK G+ V G + + +I + ++ ++ L + Sbjct: 98 ANENIADVQVKSGNQLYIFGKAGGETTVYASNGRGDVIWSANIRVGNNLDSIDQMLHMAM 157 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 +++I +++TV+L G V +D+ A L + F+ + V++ L +A Sbjct: 158 PEAHIATATMNNTVLLTGTVSAPEDAAEAERLVKAFVGEKT----------NVISRLKMA 207 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------FGGKF----- 238 QV L V AEV R + + I + ++SG GG Sbjct: 208 TPLQVNLHVKFAEVSRTLTRSIQSNWTTADATSGLKFGLGQGRSFFPQYVPGGPLGMGTA 267 Query: 239 ----------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 VS G ++ + SF L E + TLAEP LTA+SG++A F Sbjct: 268 TTTGATAVSPVSTGTTLALASKVFGLSFLAALDLAESIGLVSTLAEPNLTALSGETAEFL 327 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVN 344 +GG++ VSS G V +YGV L +TPTVL+ GRI LR++ EVSE + +N Sbjct: 328 AGGEYPIP-VSSGLGTVPVQYKNYGVSLAYTPTVLANGRISLRVRPEVSELSSDGAVSLN 386 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ VR+A+TT+EL SG + ++AGLLK+ Q +P +PILG+LFR++ + Sbjct: 387 GYSVPALSVRRAETTIELGSGQSFMIAGLLKNSSQNTIAKMPGAGDLPILGSLFRSTSYQ 446 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 R ETE+ I TP+LV PV ++ P D + K N Sbjct: 447 RGETELVIIVTPYLVNPVDPSEIHLPTDGFKSAGALKQILGN 488 >gi|115361033|ref|YP_778170.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] gi|115286361|gb|ABI91836.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] Length = 657 Score = 322 bits (826), Expect = 7e-86, Method: Composition-based stats. Identities = 121/432 (28%), Positives = 212/432 (49%), Gaps = 18/432 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + +++ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ Sbjct: 93 AVRDATSVTVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQ 152 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G +D+ + D L+ +L++ + I V + T+VL G V Q +Q+AV Sbjct: 153 GRSGAC-RVIDVAVGADAGGLQSSLQQLMPGERDIHVSTAAGTIVLAGTVSNSQAAQQAV 211 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +++ + +G V+N+L + QV L+V +AEV + ++ Q+G +I G Sbjct: 212 QIAHAYSDSAGEGAGGAGKGAGVLNMLAVTSPQQVMLEVKVAEVSKTLINQMGTAFNIQG 271 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + ++ S G + + F A ++ LAEP L IS Sbjct: 272 GFGSWSGALVSNLLAGVASAG----IFNKANNKPFSVAADAQNTDNLVKILAEPNLVTIS 327 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GQ A+F +GG+ SS T ++ ++GV L FTPTVL+ GRI L++ EVSE Sbjct: 328 GQEATFLAGGKIFIPVPQSSGTGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSE 387 Query: 339 PVIG------VNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 N G +P R+A TTV++ G + + GL+KD+ + IP + Sbjct: 388 LSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGSLKAIPGVG 447 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D +S + + + Sbjct: 448 EVPVLGALFRSTSFQQDRTELIFLITPHLVRPLQTADVPLPTDSFSKPSEIDVYATGNME 507 Query: 450 KIYGPKEASEVE 461 G ++A+ Sbjct: 508 GRKGVRKATMQP 519 >gi|12620550|gb|AAG60826.1|AF322012_131 RhcC2 [Bradyrhizobium japonicum] Length = 484 Score = 322 bits (825), Expect = 9e-86, Method: Composition-based stats. Identities = 125/476 (26%), Positives = 209/476 (43%), Gaps = 21/476 (4%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 L R + + L + A+ + ++I ++ + + Sbjct: 25 LNRLCYLLCGFALLFPLAASAETKRDGKGEMPRAAPG----STTGTLNITSSQGKTVHLS 80 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + V+DP AD S T+++FGK G+ ++ + +G+ + L I++ + + L Sbjct: 81 APAATIFVADPAIADYQAPSSSTIFVFGKKSGRTSLFALNENGEALAELRIVVTQPLEDL 140 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 L+ + D I+V +L G+ + A +++E F+ Sbjct: 141 RAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVEAARKVTEQFVGAGAP---------- 190 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 V+N + +AG QV L V +AEV R +K + + +G + G + G GG Sbjct: 191 VVNKIQVAGSLQVNLSVRVAEVSRTAVKDLNINFTASGPN-GAFLATGKPGGSGRAGGGG 249 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + + VL AL LAEP LTA+SG++ASF +GG+ + Sbjct: 250 TIGIGFSTGNINLSAVLDALASEHLASILAEPNLTAMSGEAASFLAGGEFPIPVM-QDNR 308 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359 SV +GV L F PTVLS +I +R++ EVSE + +N +P+ R+A T Sbjct: 309 QVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSELSTEGEVKINGMAVPALSTRRASTV 368 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VEL SG + + GL++ + P L +PILGALFR+S F + ETE+ I TP++V Sbjct: 369 VELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPILGALFRSSSFQKRETELVIVVTPYIV 428 Query: 420 KP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +P +S P + + DA N V + ++A G GFI + Sbjct: 429 RPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQGRDAPRASAPGLTGNAGFIIE 484 >gi|209515951|ref|ZP_03264812.1| type II and III secretion system protein [Burkholderia sp. H160] gi|209503609|gb|EEA03604.1| type II and III secretion system protein [Burkholderia sp. H160] Length = 431 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 115/443 (25%), Positives = 205/443 (46%), Gaps = 23/443 (5%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 + ++I +L +P V V+DP ADV V +P T+++ GK G + Sbjct: 3 GALAASGDPSLAIAAGGGEMLHLPEAAVAVFVADPDVADVHVPTPETVFVLGKKAGTTTL 62 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 +G + +L +++ D ++ L + + ++++ G V + Sbjct: 63 FALGAHNRTILRETVVVSADTPSIQRMLDARFPQFQLTLTAAPGSLMVAGRVPDAAAADA 122 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ +L + ++N L + QV L+V I EV R++ +Q+G + Sbjct: 123 VMQSLTPYLHDK----------ETLVNRLTLTRPIQVHLRVRITEVDRNVTQQLGINWNA 172 Query: 220 TGSSS---GPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAE 274 G S G + A +S G FS+ G +++ + VL AL++ I LAE Sbjct: 173 LGQSGNFIGGLFNGRAGSATTTLSSTGAFSILGAFQAGKWAIDGVLDALDQEGLITMLAE 232 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P LTA+SG++ASF +GG+ T + ++ YGV L FTPTVL+ RI L+++ Sbjct: 233 PNLTAMSGETASFLAGGEFPIPVPQGQTNSITIEFKPYGVSLDFTPTVLADNRISLKVRP 292 Query: 335 EVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE + +++ +P+ VR+ +TTVEL SG + + GLL+ + + +P L K Sbjct: 293 EVSELDTTNGVTIDSIKVPALTVRRVETTVELSSGQSFAIGGLLQSNTSDVLAELPGLGK 352 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 +P+LG LF + + ++E+ + TP++V+P L +P D + + Sbjct: 353 LPVLGKLFSSKSYLNNKSEVVVIVTPYIVQPAEPGRLRQPIDTIVHPSSDIEYVL----Q 408 Query: 451 IYGPKEASEVEGQNYKGAIGFIY 473 + GA GF+Y Sbjct: 409 SRLGIDPLSGSVPRLVGAAGFVY 431 >gi|254229332|ref|ZP_04922749.1| putative phospholipid-binding domain family [Vibrio sp. Ex25] gi|262393417|ref|YP_003285271.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio sp. Ex25] gi|151938140|gb|EDN56981.1| putative phospholipid-binding domain family [Vibrio sp. Ex25] gi|262337011|gb|ACY50806.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio sp. Ex25] Length = 487 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 124/437 (28%), Positives = 209/437 (47%), Gaps = 24/437 (5%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 ++++ + GK +++ ++ L + + V + DP D++V ++L GK +G Sbjct: 16 LSVNAATVQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNELFLIGKKLGT 75 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 NV + G+ + ++ + D+ L+ L +F+ D NI V + VVL G+V + Q+ Sbjct: 76 TNVSVWDRRGRLIEQFNVEVTHDLNTLKSKLYQFLPDENIEVHSAQEKVVLRGLVSSQQN 135 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 AV+++ETF ++ +SS V+NLL+I G QVTL+VT+AEV+R ++++ Sbjct: 136 MDTAVKIAETFALGEAADEEDDSSKDDDSMVINLLSIGGAQQVTLEVTVAEVQRTLVRRF 195 Query: 214 GFQHSITGSSSGPSKSFAADFGGKF-------VSEGGDFSVKGVL--DRFSFETVLHALE 264 S + GG V DF G F L + Sbjct: 196 DSNFHFFQRSGDFTWGGTTAGGGIDGIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNED--GITIDYKEYGVQLDFVPFILS 313 Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 RI L++ VSE +P R A TT+EL G TI +AGLL Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++ + + +GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D + Sbjct: 374 SENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGF 433 Query: 435 SVEDDAKAFFFNRVNKI 451 +D + + + ++ Sbjct: 434 VAPNDVEFYLLGKGAEL 450 >gi|323493503|ref|ZP_08098625.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546] gi|323312326|gb|EGA65468.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546] Length = 458 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 116/450 (25%), Positives = 201/450 (44%), Gaps = 38/450 (8%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + +N+ ++ +P D + + +S+ AD + + +FG G A + ++ Sbjct: 24 AAPLEVTINQAKMINLPQDAKSIFISNTHVADYQPMTNTKIMVFGLQAGSATITILNAQE 83 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + N I + D L + +++++ E + + L G V T + V +++ Sbjct: 84 RVIYNNKIRVTHDTFELNSLISSQFPEASVKSESLGGKLWLKGSVPTPVMAHSIVNIAKG 143 Query: 167 FLSQSGRNQYA----------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 +LS Q + S +++N L + QV ++V IAEV R++ Sbjct: 144 YLSPPTAGQSSDSSSDSESSNNTSEQQGDSGNELVNQLVVTMPTQVNIRVRIAEVSRNVS 203 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 ++G + S + G ++ D S G + + ++ AL + Sbjct: 204 NKLGIKWG----------SLESGMGSFLYTKAWDVSSWG---KPTLGALIDALASDGTMS 250 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP LTA+SG+ A+F GG+ + T +V +GV L+FTP VL P RI L Sbjct: 251 ILAEPNLTAMSGEEANFLVGGEIPLPLIIGDT--ATVEYKPFGVNLNFTPVVLGPDRISL 308 Query: 331 RIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 R+ EVS + +N PS+ R+A TT+EL SG + L GLL+ + +P Sbjct: 309 RVSPEVSSISVDNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQKLP 368 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF-- 444 + +P+LG LFR+S + R ETE+ I AT +LV+PV + P D D + Sbjct: 369 GIGDMPVLGGLFRSSDYQRRETELIIIATAYLVEPVRNDAIPLPTDSLLPLSDLERLLAI 428 Query: 445 -FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 R ++ G ++ G GF Y Sbjct: 429 PRKRDKQVKGKATYTDNRAPRLLGDNGFYY 458 >gi|16520026|ref|NP_444146.1| outermembrane protein RhcC2; component of type III secretion apparatus [Sinorhizobium fredii NGR234] gi|2495099|sp|P55702|Y4XJ_RHISN RecName: Full=Uncharacterized protein y4xJ gi|2182718|gb|AAB91933.1| outermembrane protein RhcC2; component of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 423 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 136/445 (30%), Positives = 204/445 (45%), Gaps = 30/445 (6%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 + I +S L K + L P + V+DPT AD S RT+++FGK G+ Sbjct: 2 PRAAPNSINATLNLSSSLGKTVHL--PAPAATIFVADPTIADYQAPSNRTIFVFGKKFGR 59 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 ++ + +G+ + L +++ + IA L LR + D I V +L G + Sbjct: 60 TSLFALDENGEALAELHVVVTQPIADLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAEV 119 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 A ++E FL ++N + +AG QV L V +AEV R LK +G Sbjct: 120 VDIAKRVTEQFLGDGAP----------IVNNIKVAGSLQVNLSVRVAEVSRSGLKALGIN 169 Query: 217 HSITGSSSGPSKSFA--ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 S G G GG + D S VL AL + LAE Sbjct: 170 LSAFGQFGNFKVGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLAE 229 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P LTA+SG++ASF +GG+ + G TSV +GV L F PTVL I + ++ Sbjct: 230 PNLTAMSGETASFLAGGEFPIPVL-QENGQTSVEFRRFGVSLEFVPTVLDNNLINIHVKP 288 Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE + VN +P+ R+ADT VEL SG + V+ GL++ ++ P L + Sbjct: 289 EVSELSLQGAVQVNGIAVPAVSTRRADTVVELASGQSFVIGGLIRRNVNNDISAFPWLGR 348 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 IPILGALFR+S F +EE+E+ I TP++V+P +S P D + + Sbjct: 349 IPILGALFRSSSFQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAPA----------LG 398 Query: 450 KIYGPKEASEVEGQNYKGAIGFIYK 474 + A + + KG +GFI + Sbjct: 399 TPPRARAAISTDAPSVKGDLGFIIE 423 >gi|269966892|ref|ZP_06180965.1| Flp pilus assembly protein [Vibrio alginolyticus 40B] gi|269828559|gb|EEZ82820.1| Flp pilus assembly protein [Vibrio alginolyticus 40B] Length = 487 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 122/437 (27%), Positives = 204/437 (46%), Gaps = 24/437 (5%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 ++++ GK +++ ++ L + + V + DP D++V ++L GK +G Sbjct: 16 LSVNAATAQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNELFLIGKKLGT 75 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 NV + G+ + ++ + D+ L+ L +F+ D NI V + VVL G+V + Q+ Sbjct: 76 TNVSVWDRRGRLIEQFNVEVTHDLNTLKSKLYQFLPDENIEVHSAQEKVVLRGLVSSQQN 135 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 AV+++ETF ++ +SS V+NLL+I G QVTL+VT+AEV+R ++++ Sbjct: 136 MDTAVKIAETFALGEAADEEDDSSKDDESMVINLLSIGGAQQVTLEVTVAEVQRTLVRRF 195 Query: 214 GFQHSITGSSS-------GPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALE 264 S V DF G F L + Sbjct: 196 DSNFHFFQRSGDFTWGGTTAGGGIDGIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNED--GITIDYKEYGVQLDFVPFILS 313 Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 RI L++ VSE +P R A TT+EL G TI +AGLL Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 ++ + + GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D + Sbjct: 374 SENARNVANGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGF 433 Query: 435 SVEDDAKAFFFNRVNKI 451 +D + + + ++ Sbjct: 434 VAPNDVEFYLLGKGAEL 450 >gi|94309592|ref|YP_582802.1| type II and III secretion system protein [Cupriavidus metallidurans CH34] gi|93353444|gb|ABF07533.1| Flp pilus assembly protein secretin CpaC [Cupriavidus metallidurans CH34] Length = 620 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 117/447 (26%), Positives = 221/447 (49%), Gaps = 21/447 (4%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 + + + P A+A N S I + + + K ++ +P V++ + +P Sbjct: 60 MTISMAPVPAAPSIAADARGPNCS-GAIRNESSVIVPIGKSQLIPLPEPVRNRTLGNPNV 118 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN- 135 + SP+T+Y+ G++VG N+I+ G G + +++++ D L+ +L + + + Sbjct: 119 VQATMVSPQTLYVLGRSVGTTNMIVQGRSGGCSI-INVVVNADSNGLQTSLAQLLPGESG 177 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 IRV +D +VL G V + Q + +A+++++ + + + + AN V+N++++ Q Sbjct: 178 IRVMTAADNLVLTGSVSSSQAALQAMDIAQAYANAAQGD-GANGKKGGVLNMMSVDTPQQ 236 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V L+V +AEV + +L Q+ + G S+ ++ + Sbjct: 237 VMLEVKVAEVSKTLLNQL----GSAVNIQGGFGSWTGGVISNLLTGAAAGIFGSKANNKP 292 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVT--THD 311 F + A + + ++ LAEP L ISGQ ASF +GG+ S+ GA+++T + Sbjct: 293 FNLAIDAQKNDSLVKVLAEPNLVTISGQEASFLAGGKIYIPVAQSNALGGASTITLQEEE 352 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVEL 362 +GV L FTPTVL+ GRI L++ EVSE +P R+A TTV++ Sbjct: 353 FGVGLKFTPTVLANGRIHLKVSPEVSELSPTGATVSGSTLTGQTILPLITTRRASTTVQM 412 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G + + GLL+D + + +P ++P+LG LFR+++F ++ TE+ TP LVKP+ Sbjct: 413 RDGESFAIGGLLQDSARGSLKALPGAGEVPVLGTLFRSTQFQQDLTELVFIITPHLVKPM 472 Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++ P D ++ D +F + Sbjct: 473 QTQNYPLPTDGFTTPDPLSLYFMGNME 499 >gi|150377247|ref|YP_001313842.1| type II and III secretion system protein [Sinorhizobium medicae WSM419] gi|150031794|gb|ABR63909.1| type II and III secretion system protein [Sinorhizobium medicae WSM419] Length = 466 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 125/450 (27%), Positives = 217/450 (48%), Gaps = 23/450 (5%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK--GKKISIGLNKVIILQ 61 + R+ ++ + F +A I ++A N VEI + I + K + ++ Sbjct: 1 MTRSRGSLFAFFCLV----LAVFMGIGVGSSASANGDSVEISSNFSRSIRVAKGKTVTIR 56 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 ++++ DP A V + R+ Y+ G +G +V + + + +DI + D Sbjct: 57 AVQRFDEIVIGDPEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTK 116 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L T+R+ + SN++V + +VL G + +A +++ F Sbjct: 117 LLSSTIRQSVPGSNVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD----------- 165 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++N + I QV L V E+ RD+ K++G + S + S S F + + Sbjct: 166 EEIINSVKITSSQQVQLNVRFVEINRDVGKELGTRISAAYAWSNGSVEFNSRPRATSNTP 225 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + +S + + ALE R LAEP L A SG+++SF +GG+ VS Sbjct: 226 AGSLIGSLIGEGYSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIP-VSED 284 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKAD 357 G +V+ +GV L FTPTVLS G I L I+ EVS + +P + VR+A Sbjct: 285 DGQIAVSYKKFGVGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVRNISIPGFSVRRAR 344 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T+V+L SG + ++AGLL+ + + + +P L ++PILGALF + + R ET++ I TP Sbjct: 345 TSVDLKSGQSFMIAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPH 404 Query: 418 LVKPVAM-RDLSRPDDHYSVEDDAKAFFFN 446 LVKP+ + ++ P D +A+ F N Sbjct: 405 LVKPMDPLKKVASPSDRTKRPTEAEFFLGN 434 >gi|172065273|ref|YP_001815985.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] gi|171997515|gb|ACB68432.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] Length = 656 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 123/432 (28%), Positives = 214/432 (49%), Gaps = 19/432 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ Sbjct: 93 AVRDATSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQ 152 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G +D+ + D L+ +L++ + I V + T+VL G V Q +Q+AV Sbjct: 153 GRSGAC-RVIDVAVGADAGGLQSSLQQLMPGERDIHVSTAAGTIVLAGTVSNSQAAQQAV 211 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +++ + S S + V+N+L + QV L+V +AEV + ++ Q+G +I G Sbjct: 212 QIAHAY-SDSAGDGGGAGKGAGVLNMLAVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQG 270 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + ++ S G + + F A ++ LAEP L IS Sbjct: 271 GFGSWSGALVSNLLAGVASAG----IFNKANNKPFSVAADAQNTDNLVKILAEPNLVTIS 326 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GQ A+F +GG+ SS T ++ ++GV L FTPTVL+ GRI L++ EVSE Sbjct: 327 GQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVSE 386 Query: 339 PVIG------VNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 N G +P R+A TTV++ G + + GL+KD+ + IP + Sbjct: 387 LSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGVG 446 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D +S ++ + + Sbjct: 447 EVPVLGALFRSTSFQQDRTELIFLITPHLVRPLQTADVPLPTDSFSKPNEVDVYATGNME 506 Query: 450 KIYGPKEASEVE 461 G ++A+ Sbjct: 507 GRKGVRKATMQP 518 >gi|304320647|ref|YP_003854290.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503] gi|303299549|gb|ADM09148.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503] Length = 494 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 144/502 (28%), Positives = 239/502 (47%), Gaps = 42/502 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 MR + + L + PS+A+ + +++ + L K I+ Sbjct: 5 MRKILSVMAGLAGAVLIGTGPSMAQPGGSTPLEFETTYDAGGNGLASREVLLPLGKAAII 64 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 ++P D++VSDP + V+ +P+ ++L G+ GQAN Q+LNL+I +E+D Sbjct: 65 ELPRPATDIIVSDPDIVEAVIRTPQRVFLMGREAGQANAFFFDRANNQILNLEIRVEQDA 124 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + + + + ++ I VE ++ V++HG V D+QRA E++ F + Sbjct: 125 DTIRELMTKLVPNARISVESLNGNVIIHGTVDNASDAQRAGEIASRFAGE---------- 174 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFG 235 +N+L + QV LK+ I E++R +++Q+G + + FA A G Sbjct: 175 -DNFVNMLKVREPSQVLLKIKIVEMQRRLVRQLGIDLNGVAQVDRSAIEFAVQNSFAISG 233 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + S G D + + E+ ++TLAEP++ A+SG++ASF +GG+ Sbjct: 234 QSLGGINANLSTPGFGDITNLDFAFDIFEQNGLVKTLAEPSIVALSGRNASFLAGGEFPV 293 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------------- 341 S + G SVT +GV L F P V S RI L + TEVS+ Sbjct: 294 PEAS-ANGTPSVTFKPFGVQLEFQPVVYSKNRIQLTLATEVSDVSNVNGLSIAGATQAEE 352 Query: 342 ----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 +P R A TTVELPSGG++ LAGLL++DI ++ +G+P L + Sbjct: 353 DPDTGEIIEQTFEGFIVPGTVSRSAATTVELPSGGSLALAGLLQEDINEVIDGVPGLKET 412 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P+LGALFR+ F ++TE+ I ATP+LV+P + L+ P Y+ ++ ++ Sbjct: 413 PVLGALFRSQEFQSQQTELVIIATPYLVEPTDLAALTDPAQGYAPPSPVQSVILGQLESA 472 Query: 452 YGPKEASEVEGQNYKGAIGFIY 473 YG + + Q G IGFI Sbjct: 473 YGVRGRKARDAQ-LSGPIGFIL 493 >gi|329890996|ref|ZP_08269339.1| bacterial type II and III secretion system family protein [Brevundimonas diminuta ATCC 11568] gi|328846297|gb|EGF95861.1| bacterial type II and III secretion system family protein [Brevundimonas diminuta ATCC 11568] Length = 522 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 138/507 (27%), Positives = 250/507 (49%), Gaps = 70/507 (13%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 + A + + +++ + +P D +DV++S+P A+ ++HSPR + Sbjct: 26 AASDGARAQTRAAITAGSAPQMVNLPRGTSFAVDLPADARDVIISNPAVAEAMLHSPRRI 85 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 + G G+ + + + G+ +L L + ++ ++ L+ TL R SN+R E V+D+++L Sbjct: 86 TMIGLAGGETDAVFLDASGRTILALRVRVDAGVSALQDTLARVAPGSNVRAEAVNDSIIL 145 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G+ + +++RA +++ F+ S+ +KVMN++ +AG DQVTLKV + EV+R Sbjct: 146 TGVAASPLEAERAAQVARAFV----------SAPEKVMNMIAVAGSDQVTLKVRVVEVQR 195 Query: 208 DILKQIGF------------QHSITGSSS-GPSKSFAADFGGKFV--------------- 239 + +KQ+GF Q + S++ G + SF G Sbjct: 196 NAIKQLGFDTQAVIGRVGDTQWLLGNSATWGVNGSFLGGLAGGIARDTTKNFQMQVPCVG 255 Query: 240 -----------------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 + G E +L A ER +RTLAEP Sbjct: 256 PGWPEGAMCPVTVDGSPGDPSNWDTAKPGTGPGSDGLNKGEAMLKAFERVGLVRTLAEPN 315 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 LT+++G++ASF +GG+ G +V YGV L F P VLS GRI L+++ EV Sbjct: 316 LTSVNGEAASFLAGGEFPVPAGRDREGQITVEYKPYGVGLSFRPVVLSEGRISLQVKVEV 375 Query: 337 SEPVI---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE ++ +P VR+++ T+ELPSGG++++AGLL++ +Q + +P Sbjct: 376 SELTPNGGLTIGAGTPSSITLPGLTVRRSENTIELPSGGSMMIAGLLQESTRQAIDALPG 435 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 ++ +P+LG LFR+ + ETE+ + P++V P + + P D + DA+ FF + Sbjct: 436 MTNLPVLGQLFRSRDYVMGETELVVIVEPYIVNPTSPDRMQTPADGLRIAQDAQTIFFGQ 495 Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIYK 474 +N++YG + G ++G +G++ + Sbjct: 496 LNQVYGSPAPAAQPGAGWRGPVGYVIE 522 >gi|84386797|ref|ZP_00989822.1| type II and III secretion system protein [Vibrio splendidus 12B01] gi|84378325|gb|EAP95183.1| type II and III secretion system protein [Vibrio splendidus 12B01] Length = 465 Score = 319 bits (818), Expect = 6e-85, Method: Composition-based stats. Identities = 119/460 (25%), Positives = 211/460 (45%), Gaps = 45/460 (9%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + +N+ ++++P + + +S+ A+ + + +FGK G A + ++ Sbjct: 21 ASTASTFDVTINEARMIRLPEKAKSIFISNTHIANYQTLTNTKVMIFGKQAGSATITVLN 80 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + I + + ++ ++++ E + + L G V + + V L Sbjct: 81 EQERVIYTNKIRVTHNSREFNELVKNKFPEASVNAESLGGKLWLKGRVPSPMMAHNIVSL 140 Query: 164 SETFLS-----------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 ++ +LS + +NQ + +++N L + +QV ++V Sbjct: 141 AKGYLSPIVGSTEQQESSNSQGNSNNSSSSTNQNQQTQLNDDELINQLVVTMPNQVNIRV 200 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 IAEV R++ ++G + GS +G F+ S G + S ++ Sbjct: 201 KIAEVSRNVSNKLGIKW---GSIAGGVGQFSFSKLPNVSSWG----------KPSITALI 247 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 AL + LAEP LTA+SG+ A F GGQ +++ T T + D+GV L+FTP Sbjct: 248 DALATNGMMSVLAEPNLTAMSGEDAEFLVGGQVPLPLITADT--TQIEYKDFGVKLNFTP 305 Query: 321 TVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TVLS RI L++ EVS I +N + PS+ R A TT+EL SG + L GLLK Sbjct: 306 TVLSQNRISLKVNPEVSNISIESQQVINGTNFPSFTTRSASTTIELASGQSFALGGLLKS 365 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + + + +PL+ +IP+LG+LFR++ F R ETE+ I T +LV+P + P D Sbjct: 366 EDIEQLQKVPLIGEIPVLGSLFRSTEFTRRETELIIIVTAYLVQPTRSDSMPLPTDGLIP 425 Query: 437 EDDAKAFF-FNRVNKIYGPKEASEVEGQNYK--GAIGFIY 473 D + + R + +A+ + Q + G GF Y Sbjct: 426 LSDVERLLAWPREQQKTSNNKATYTDNQKPRLLGDNGFYY 465 >gi|149912019|ref|ZP_01900613.1| putative membrane protein [Moritella sp. PE36] gi|149804918|gb|EDM64952.1| putative membrane protein [Moritella sp. PE36] Length = 473 Score = 319 bits (818), Expect = 6e-85, Method: Composition-based stats. Identities = 122/460 (26%), Positives = 208/460 (45%), Gaps = 42/460 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + + + + LNK ++++P + + ++ + AD + + +FGK G ++ ++ Sbjct: 24 QAQTLDVVLNKARLIELPKTAKSIFIASSSIADYQTLTNTKIMVFGKKTGSTSLYVLDAK 83 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + + + ++ L + + D+ E + + L G V T +++ V LSE Sbjct: 84 ENVIYSATVKVSHNVTELNELIHKEFPDAIFNAESTAGKLFLKGQVPTPSMAEKIVRLSE 143 Query: 166 TFLS--------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 ++S Q + +N + +++N L + +QV L++ IAEV Sbjct: 144 GYVSTLASTESSDSQQSGNAQSSTQPTQPAASNVDNDELINQLQVTMPNQVNLRIRIAEV 203 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 R + ++G + G +G + +F ++GGK ++ AL Sbjct: 204 SRKVSNKLGIKWGSQGFGTG-TFAFLDNYGGK-------LGGVNPASWADLSVIVDALAT 255 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + LAEP LTA+SG+ ASF GG+ V S T +V +GV L F PTVLS Sbjct: 256 NGMMSVLAEPNLTAMSGEEASFLVGGEIPIPLVYSDT--ATVEYKTFGVRLDFKPTVLSA 313 Query: 326 GRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 RI L++ TEVS N + P++ R+A TT+EL SG + L GLL+ Sbjct: 314 NRISLKVATEVSTVSSETNVQIGGTQGSSSFPTFVTRRASTTIELASGQSFALGGLLQSK 373 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + + +PLL IP+LGALFR++ F REETE+ I AT +LV+P L P D Sbjct: 374 DIEQLQKMPLLGDIPVLGALFRSNEFQREETELIIIATAYLVQPTRADILPLPTDGLIPM 433 Query: 438 DDAKAFF----FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 D + + + ++ G GF Y Sbjct: 434 SDVERLLAWPVSKQATNATDNESRTDNRQPRLLGDNGFYY 473 >gi|197106459|ref|YP_002131836.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1] gi|196479879|gb|ACG79407.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1] Length = 484 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 116/430 (26%), Positives = 203/430 (47%), Gaps = 20/430 (4%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 F++ + + A + + + V G ++++ K ++++ V ++DP Sbjct: 4 FAAIAAALSVGAGTLAPQSALAAAAVVAGPSSELAVEAGKGRLIRLDRPAATVFIADPKI 63 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 ADV V SP +Y+ GK G ++ + + + +L + + D A L+ L+R +S I Sbjct: 64 ADVQVKSPTLVYVLGKAPGATSLFALDAGERMIADLAVNVGIDTARLDQALKRHAPNSQI 123 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 +VE V ++L G + + + ++ F+ G + +++N + + +Q+ Sbjct: 124 QVESVDGALILSGKAGSAAEGADILRIAAEFVPGEGEARAG-----RLINRIVVEQPNQI 178 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------FGGKFVSEGGDFSVK 248 L V +AEV + + +G G A F G ++ Sbjct: 179 NLHVRVAEVSKQAREVLGVNWDAMGLLGEGMVGLATGRQIFTNPASRETFSRLNGTDTIV 238 Query: 249 GVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 G ++ AL++ ++ LAEP LTA+SG+ ASF +GG++ + Sbjct: 239 GSYQDGDLDLNVLVDALKQKGLVKVLAEPNLTAVSGEPASFLAGGEYPIPVPQRGEDLIT 298 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVEL 362 + +GV L F TVL GRI L ++ EVS+ I V +P+ R+A+TTVEL Sbjct: 299 IDYKQFGVSLSFVATVLDGGRISLNVRPEVSQLSEAGAITVQGLTVPALTTRRAETTVEL 358 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 SG + +AGLL++ + +P L IP+LG LFR+ F + E+E+ I TP+LVKP Sbjct: 359 GSGQSFAIAGLLQNTSNETLRKLPGLGDIPVLGNLFRSKEFQKNESELVIIVTPYLVKP- 417 Query: 423 AMRDLSRPDD 432 A R L+ P D Sbjct: 418 ASRTLATPAD 427 >gi|77919345|ref|YP_357160.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380] gi|77545428|gb|ABA88990.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380] Length = 507 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 124/490 (25%), Positives = 211/490 (43%), Gaps = 50/490 (10%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 F + + LF+ + + + ++IG ++++ ++ P Sbjct: 12 CFLGLFCLALFTGTAAADDIEHL-----------------TLDVNIGGSELVEIREPSQR 54 Query: 67 QDVLVSDPTKADVVVHSPR--TMYLFGKNVGQANVILIGHDGKQMLNL-DILIERDIAHL 123 +L+S+ P +Y GK +G + V + +Q+ + D+ + D+ L Sbjct: 55 MKILISNGDIIGARPLRPNLINVYNLGKKIGFSRVTVWDDAARQVRAIIDVSVNLDLTPL 114 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + NI+V VVL G V + + ++ + L+ETFL + + + K Sbjct: 115 KQKIGELYPHENIKVYASETGVVLSGTVSSPEVVEQVIRLTETFLPKKAEASTSGKGTGK 174 Query: 184 ----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------ 233 + NLL++ G QV L+V AEV R + G Sbjct: 175 SGSGITNLLSVGGVQQVMLEVKFAEVTRSSGRDWQAALGFNGLGDNSGLVAGVGGISGDI 234 Query: 234 ----FGGKFVSEGGDFS------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 F GK S +F+ + F + L LE R LAEP L +SGQ Sbjct: 235 SGGDFTGKLGSVLLNFADFASNPANIFVQMGDFTSALRFLEDEGLARILAEPRLVTMSGQ 294 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 ASF +GG+ ++ ++GV L FTP V+S G+I LR+ VS+ Sbjct: 295 EASFLAGGEFPIPVP--DEDGITIEFREFGVSLRFTPVVMSDGKISLRVAPSVSDIASTS 352 Query: 344 --------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 ++P+ RK +TTV+L G T+ LAGLL+D +++ IP L +PILG Sbjct: 353 SIPSSITGTTYNVPNLTTRKLETTVQLYDGQTLALAGLLQDTLRESVSKIPGLGDLPILG 412 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 ALFR++ + +E+T++ IA TP LVKP LS P ++ + + + R+ P Sbjct: 413 ALFRSTSYTQEKTDLLIAVTPHLVKPSKEGTLSFPGEYMRPPNRLEFYLEGRLEGRRFPN 472 Query: 456 EASEVEGQNY 465 + S + ++ Sbjct: 473 DPSALSQHSF 482 >gi|312883754|ref|ZP_07743473.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368503|gb|EFP96036.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122] Length = 460 Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 117/452 (25%), Positives = 201/452 (44%), Gaps = 40/452 (8%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + + +N+ ++ + D + + +S+ AD + + +FG G A + ++ Sbjct: 24 AEPLEVNINEAKMINLSQDAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITILNAQE 83 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + N I + D L+ + ++++ E + + L G V T + V +++ Sbjct: 84 RVIYNNKIRVVHDTKELDSLIAAQFPEASVHSESLGGKLWLKGNVPTPVMAHSIVSVAKG 143 Query: 167 FLSQSGRNQY---------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 +LS N N + +++N L + QV ++V IAEV R++ Sbjct: 144 YLSPVTANAQSEKGSTSPDSSTHSRGNENEDELINQLVVTMPTQVNIRVRIAEVSRNVSN 203 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 ++G + S G ++ D S G + + ++ AL + Sbjct: 204 KLGIKWG----------SVGEGIGSFLYTKAWDVSSWG---KPTLSGLVDALASDGTMSI 250 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP LTA+SG+ ASF GG+ ++ T +V +GV L+FTP VL P RI LR Sbjct: 251 LAEPNLTAMSGEEASFLVGGEIPLPLINGDT--ATVEYKPFGVNLNFTPVVLGPDRISLR 308 Query: 332 IQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVS +N PS+ R+A TT+EL SG + L GLL+ + +P Sbjct: 309 VSPEVSSVSVSNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQKLPG 368 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF-- 445 IPILG LFR++ + R+ETE+ I AT +LV+PV L P D+ D + Sbjct: 369 AGDIPILGGLFRSNEYQRKETELIIIATAYLVEPVRNDTLPLPTDNLLPRSDLERLLVAF 428 Query: 446 ----NRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + ++ G ++ G GF Y Sbjct: 429 PRKRGKQKQVKGKDTYTDNRAPRLLGDNGFYY 460 >gi|13475417|ref|NP_106981.1| pilus assembly protein [Mesorhizobium loti MAFF303099] gi|14026169|dbj|BAB52767.1| pilus assembly protein [Mesorhizobium loti MAFF303099] Length = 481 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 122/480 (25%), Positives = 212/480 (44%), Gaps = 35/480 (7%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 F+ M+ S ++ + +A I++S+ + ++ + +++ + + V + Sbjct: 4 FWVRMAAVALSCFATLPTWSLVADAADRFIDVSNPSV---HRVFLPMSQSVTIAVNATLG 60 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 D++V D AD + RT+Y+ GK G V L + + + + I + D++ + + Sbjct: 61 DIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSPEKRSLGVIQIEVGVDVSDMAQAI 120 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 R+ S I V V+ V L G V+ +E+++ + ++N Sbjct: 121 RQVAPRSRIEVASVNGRVRLGGHVKDGVTMAAILEVAKQY------------GPDDIINS 168 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------------ADF 234 + I QV L+V I E +R+ + +G S S F Sbjct: 169 VTIDDSQQVNLEVRILEAKRNAGRDLGVSIRSNNSRSTTIVGTGIAAVDKDNVVLGTGGF 228 Query: 235 GGKFVSEGGDFSV---KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 +S F + + + + + ALE A+RTLA P LT +SG+ ASF +GG Sbjct: 229 LSDLLSTSTPFGALLTRVIDNNIKVDLYIEALEAKGAVRTLANPNLTTLSGEQASFNAGG 288 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 + +T+ G S+ +GV L FTP VL G+I + + EVS+ AGD P + Sbjct: 289 EVPIRTL-DKNGEISIVYKQFGVNLLFTPVVLDDGKIHMNLAPEVSDLNGFTTAGD-PIF 346 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 RK T VEL G + + GLL +L+ +P L ++P++G LFRNS +EETE+ Sbjct: 347 TNRKLSTVVELRDGQSFAVGGLLSSRTTKLQNQVPWLGQVPVIGTLFRNSSNQKEETELV 406 Query: 412 IAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 + TP +V+PV L+ P D +D + F ++ ++ G G G Sbjct: 407 VIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQL-EVNKDMIRRYETGDGVTGPYG 465 >gi|46204251|ref|ZP_00050268.2| COG4964: Flp pilus assembly protein, secretin CpaC [Magnetospirillum magnetotacticum MS-1] Length = 472 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 132/434 (30%), Positives = 217/434 (50%), Gaps = 24/434 (5%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 L+ ++S P+ P A + ++ G+ +++ + + +I+ +P Sbjct: 7 LRTIVLALLSAACLGQVPARRAKTPDCPARPRSDDRAERS-GQSRRVELSKGRSLIVDLP 65 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D ++V V++P A+ VV S R ++L G G ++ ++ +G+Q+ LD+ I RDI L Sbjct: 66 RDAKEVFVANPAVANAVVRSSRKLFLIGIENGATSIFVMDAEGRQIAALDVTIARDINVL 125 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 +L++ + +I V+ V D++VL G V + ++Q+A++++ ++ Sbjct: 126 RQSLQQSLPGRHIDVKAVGDSLVLSGGVSSASEAQQAIDIANA--FVGIAGGAGGAARGA 183 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----QHSITGSSSGPSKSFAADFG---- 235 V+N L I +DQV ++VT+ EV R ++KQ G S + G Sbjct: 184 VINNLTIRNKDQVMIRVTVVEVARSVIKQFGISTTGNWSALNPLDSTGNFLTNNTGFPLT 243 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G F G + FS + L A E+A R LAEPTLTAISG++A FT+GG+ Sbjct: 244 GAFTPSGNALTASVRSGGFSLQATLRAFEQAGVSRILAEPTLTAISGEAAKFTAGGEIPV 303 Query: 296 KT-----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------ 344 S S+ YGV L FTP VL+ RI +R+ T+V+E + Sbjct: 304 PANCSVGAVGSACTISLVYKPYGVSLSFTPVVLAENRISIRVATDVTELDTQNSFSYNLN 363 Query: 345 --AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +P+ R R ++TTVEL SG T++ AGL++ + G+P L +PILGALFR+ Sbjct: 364 GRVVPVPATRRRNSETTVELASGATMMTAGLIQQQNKGTINGLPGLMNLPILGALFRSRD 423 Query: 403 FNREETEIFIAATP 416 F R+E E+ I TP Sbjct: 424 FQRDENELMILVTP 437 >gi|261251598|ref|ZP_05944172.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] gi|260938471|gb|EEX94459.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] Length = 457 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 121/449 (26%), Positives = 205/449 (45%), Gaps = 37/449 (8%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + +N+ ++ +P D + + +S+ AD + + +FG G A + ++ Sbjct: 24 AAPLEVNINEAKMINLPQDAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITILNAQE 83 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + N I + D L+ + ++++ E + + L G V T + V +++ Sbjct: 84 RVIYNNKIRVVHDTKELDSLIAAQFPEASVHSESLGGKLWLKGNVPTPVMAHSIVSVAKG 143 Query: 167 FLS---------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 +LS S + +S +++N L + QV ++V IAEV R++ Sbjct: 144 YLSPVIAPQQSENGSTSSDSSTQNSGSDNSDELVNQLMVTMPTQVNIRVRIAEVSRNVSN 203 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 ++G + S A G ++ D S G + + ++ AL + Sbjct: 204 KLGIKWG----------SLQAGMGSFLYTKAWDVSSWG---KPTLGALVDALASDGTMSI 250 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP LTA+SG+ ASF GG+ ++ T +V +GV L+FTP VL P RI LR Sbjct: 251 LAEPNLTAMSGEDASFLVGGEIPLPLINGDT--ATVEYKPFGVNLNFTPVVLGPDRISLR 308 Query: 332 IQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVS + +N PS+ R+A TT+EL SG + L GLL+ + +P Sbjct: 309 VSPEVSSVSVDNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQKLPG 368 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF--- 444 IPILG LFR+S + R+ETE+ I AT +LV+PV L P D+ D + Sbjct: 369 AGDIPILGGLFRSSEYQRKETELIIIATAYLVEPVRNDALPLPTDNLLPLSDLERLLAIP 428 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 +R ++ G ++ G GF Y Sbjct: 429 RSRGKQVKGKDTYTDNRAPRLLGDNGFYY 457 >gi|237509564|ref|ZP_04522279.1| type II/III secretion system protein [Burkholderia pseudomallei MSHR346] gi|235001769|gb|EEP51193.1| type II/III secretion system protein [Burkholderia pseudomallei MSHR346] Length = 690 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509 Query: 448 VNKIYGPKE 456 + G ++ Sbjct: 510 MEGRGGLRQ 518 >gi|13471032|ref|NP_102601.1| secretory protein [Mesorhizobium loti MAFF303099] gi|14021776|dbj|BAB48387.1| probable secretory protein [Mesorhizobium loti MAFF303099] Length = 461 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 124/440 (28%), Positives = 210/440 (47%), Gaps = 22/440 (5%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 M+ L + ++ LP + +A+ ++ +S + I + K + +++ Sbjct: 1 MAAALVAG--AMLALPGVAKADNDIVYVSATKNA---SIKVAKGKPKTIVTNAAFYQIVI 55 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 DP A+V + ++ Y+ G N+G + L + + +DI + D L T+R + Sbjct: 56 GDPEIANVNPLTDKSFYVLGNNLGTTGIALFDEKKQLVGTVDIEVTLDTDQLASTIRASV 115 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 D+ I+V + VVL G +++A +++ F S +++V+N +NI+ Sbjct: 116 PDAKIKVGSANGRVVLSGEADDAVAAEKANKIATRF-----------SGTEEVINSVNIS 164 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV L V E+ R + +G ++S + + + D G + G+ + + Sbjct: 165 SSQQVQLNVRFVEINRQAGQDLGAKYSANFAYGFGGRDVSLDPGTVPAAGTGEIIGRLLS 224 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + S + + ALE R LAEP L A SG++ASF +GG+ VS G SV+ Sbjct: 225 NGVSIDIAIKALEERGLARRLAEPNLIARSGETASFLAGGEFPIP-VSEDNGKISVSYKK 283 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTVELPSGGT 367 YGV L FTPTVL G + L I EVS + +P + VR+A T+V+L +G + Sbjct: 284 YGVSLDFTPTVLKDGLVSLDIAPEVSSIDASSSYNIGTISVPGFIVRRAKTSVDLKNGQS 343 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RD 426 ++AGLL+ IP L K+P+LGALF + + R ET++ I TP+LVKPV + Sbjct: 344 FMIAGLLQSQNDITTSRIPGLGKMPVLGALFSSKSYQRRETDLVIIVTPYLVKPVDPSKK 403 Query: 427 LSRPDDHYSVEDDAKAFFFN 446 + P D + F N Sbjct: 404 MVEPTDGTRPASNVDYFLNN 423 >gi|148976307|ref|ZP_01813031.1| type II and III secretion system protein [Vibrionales bacterium SWAT-3] gi|145964401|gb|EDK29656.1| type II and III secretion system protein [Vibrionales bacterium SWAT-3] Length = 464 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 118/459 (25%), Positives = 213/459 (46%), Gaps = 44/459 (9%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + +N+ ++++P + + +S AD + + +FGK G A + ++ Sbjct: 21 ASAASALDVTINEAKMIRLPEKAKSIFISSTHIADYQTLTNTKVMVFGKRAGSATITVLN 80 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + I + + ++ ++++ E + + L G V + + V L Sbjct: 81 EQERVIYTNKIRVTHNSREFNELVKNKFPEASVNAESLGGKLWLKGRVPSPMMAHNIVSL 140 Query: 164 SETFLS----------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 ++ +LS ++Q +S ++++N L + +QV ++V Sbjct: 141 AKGYLSPIVNQTEQKEGSNTNKNNSSDSALTQSQPTSSKEEELINQLVVTMPNQVNIRVK 200 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 IAEV R++ ++G + S A G + ++ + S G + S T++ Sbjct: 201 IAEVSRNVSNKLGIKWG----------SLAGGVGQFYFAKFPNVSSWG---KPSITTLVD 247 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + LAEP LTA+SG+ A F GGQ +++ T T + D+GV L+FTPT Sbjct: 248 ALASNGMMSVLAEPNLTAMSGEDAEFLVGGQVPLPLITADT--TQIEYKDFGVKLNFTPT 305 Query: 322 VLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VLS RI L++ EVS I + + PS+ R A TT+EL SG + L GLLK + Sbjct: 306 VLSQNRISLKVNPEVSNVSIDGQQVIQGANFPSFTTRSASTTIELASGQSFALGGLLKSE 365 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + + +PL+++IP+LG+LFR++ F R ETE+ I T +LV+P + P D Sbjct: 366 DIEQLQKVPLVAEIPVLGSLFRSTEFTRRETELIIIVTAYLVQPTRSDSMQLPTDGLIPL 425 Query: 438 DDAKAFF-FNRVNKIYGPKEASEVEGQNYK--GAIGFIY 473 D + R+ + + + + Q + G GF Y Sbjct: 426 SDVERLLALPRIQRKRTHDQDTYTDNQKPRLLGDNGFYY 464 >gi|329847253|ref|ZP_08262281.1| bacterial type II and III secretion system family protein [Asticcacaulis biprosthecum C19] gi|328842316|gb|EGF91885.1| bacterial type II and III secretion system family protein [Asticcacaulis biprosthecum C19] Length = 535 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 150/526 (28%), Positives = 244/526 (46%), Gaps = 69/526 (13%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 T+++ ++ + + + + + + + ++ +P D Sbjct: 20 LMTLLATGAHATGEPKPYNSLKSGGGGGMAVQTQTSQARVQVLRLPKGRSAVVDLPTDAA 79 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 DV VS+P AD V+ +PR +++ G GQ++ I G+Q+LNL I +E L T+ Sbjct: 80 DVFVSNPAVADAVLRTPRRIFVLGVEGGQSDAIFFDAQGRQILNLSIRVEAATDELTDTV 139 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 R S + V+ ++ VVL G+ + + + L+ +++++ + V+NL Sbjct: 140 HRLFPTSKVEVQSLNGRVVLSGLAQNNAQADQIARLAASYVTK----------PEDVINL 189 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA--ADFGGKFVSEGGDF 245 ++IAG+DQVTLKV + EV+R +KQ+G I ++ S S+ +G S GG Sbjct: 190 MSIAGKDQVTLKVRVIEVQRSAIKQLGLSSDIVYNNGSQSYSYGRGNTYGTNGTSYGGRG 249 Query: 246 ----------------------------------------------SVKGVLDRFSFETV 259 + L S T Sbjct: 250 LCYGQNNVVTNNFTDSNSVTDQTAVTLEDTPVVNRTLTATIGSAVNTTWRTLTGSSNATC 309 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A ER IRTLAEP LTA+SG++A F +GG+ G +V +GV L FT Sbjct: 310 LQAFERVGLIRTLAEPNLTAVSGEAAKFLAGGEFPVPVAEDDAGRITVEFKPFGVGLGFT 369 Query: 320 PTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 P VLS GRI ++I TEVSE + +P VR+A+TTVE+ SGG++++AGL Sbjct: 370 PVVLSEGRISMKISTEVSEITNVGAFTSNGSNLTIPGLSVRRAETTVEMQSGGSLMIAGL 429 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L+ +Q + +P ++ +PILG+LFR+ F E+TE+ + TP++V PV L P D+ Sbjct: 430 LQSKYKQSIDSLPGMTSLPILGSLFRSRDFLNEDTELVVMVTPYIVDPVHPDQLQTPADN 489 Query: 434 YSVEDDAKAFFFNRVNKIY-GPKEASEVEGQNYKGAI----GFIYK 474 DD F R+NK+ G A+ V G G++ + Sbjct: 490 LEFADDMSTVFMGRLNKVVDGDAVAAGVPASGPTGPYVAPIGYVIE 535 >gi|254182583|ref|ZP_04889177.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|184213118|gb|EDU10161.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] Length = 690 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509 Query: 448 VNKIYGPKE 456 + G ++ Sbjct: 510 MEGRGGLRQ 518 >gi|260463894|ref|ZP_05812090.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259030269|gb|EEW31549.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 481 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 119/447 (26%), Positives = 210/447 (46%), Gaps = 20/447 (4%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 + F +++ + + ++ A+ ++ +S + I + K + Sbjct: 12 RSCFVRALAMAVSLAAGAMLAFAGAARADNDIVYVSATKNA---SIKVAKGKPKTIITSA 68 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 +++ DP A+V + ++ Y+ G N+G + L + + +DI + D L Sbjct: 69 AFYQIVIGDPEIANVNPLTDKSFYVLGNNLGTTGIALFDDKKQLVGTVDIEVTLDTDELA 128 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 T+R + D+ I+V + VVL G +++A +++ F S +++V Sbjct: 129 NTIRASVPDAKIKVGSANGRVVLSGEADDAVAAEKANKIATRF-----------SGNEEV 177 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 +N +NI+ QV L V E+ R + +G ++S + + + + G + G+ Sbjct: 178 INSVNISSSQQVQLNVRFVEINRQAGQDLGAKYSANFAYGFGGRDVSLEPGTVPAAGTGE 237 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + + S + + ALE R LAEP L A SG++ASF +GG+ VS G Sbjct: 238 IIGRLLSNGVSIDIAIKALEERGLARRLAEPNLIARSGETASFLAGGEFPIP-VSEENGK 296 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTV 360 SV+ YGV L F PTVL G + L I EVS + +P + VR+A T+V Sbjct: 297 ISVSYKKYGVSLDFKPTVLKDGLVSLDIAPEVSSIDASASYNIGNISVPGFIVRRARTSV 356 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +L +G + ++AGLL+ IP L K+P+LGALF + + R ET++ I TP+LVK Sbjct: 357 DLKNGQSFMIAGLLQSQNDITTSRIPGLGKMPVLGALFSSKSYQRRETDLVIIVTPYLVK 416 Query: 421 PVAM-RDLSRPDDHYSVEDDAKAFFFN 446 PV + ++ P + +A F N Sbjct: 417 PVDPSKKMAEPTNGTQPASNADYFLNN 443 >gi|260462607|ref|ZP_05810813.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259031513|gb|EEW32783.1| type II and III secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 478 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 117/476 (24%), Positives = 214/476 (44%), Gaps = 32/476 (6%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 + M S ++ +A I++S+ + ++ + +++ + +QV ++ D Sbjct: 5 WLRMGAAALSCLGALLLTSLAADAADRFIDVSNPSV---HRVFLPMSQSVTIQVNANLGD 61 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 ++V D AD + RT+Y+ GK G V L D + + + I + D++ + +R Sbjct: 62 IVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSTDKRSLGVIQIEVGVDVSDMAQAIR 121 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + S I + ++ V L G V+ + +++++ + ++N + Sbjct: 122 QVSPRSRIEIGSINGKVRLGGHVKDGATLEAIMQVAQQY------------GPDAIINSV 169 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------ 242 + QV L+V + E +R+ + +G GSS+ + A G Sbjct: 170 TVDDSQQVNLEVRVLEAKRNAGRDLGVSFRSRGSSATIFGTGIAATTPPGADPGTLVTGL 229 Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + + + ++ ALE +RTLA P LT +SG+ ASF +GGQ Sbjct: 230 LSKTNPFASLITQIIDSNIKVDLIIEALEAKGVVRTLANPNLTTLSGEPASFNAGGQVPI 289 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 ++V+ G + +GV L FTP VL+ +I + + EVS+ +AGD P + RK Sbjct: 290 RSVT-KDGLIQIEYKQFGVNLQFTPIVLADDKIHISLAPEVSDLTGFTSAGD-PIFTNRK 347 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 DT VEL G + + GLL +L+ +P L ++P++G LFRNS +EETE+ + T Sbjct: 348 LDTVVELRDGQSFAVGGLLSSKTTKLQNQVPWLGQVPVIGTLFRNSSNQKEETELVVIVT 407 Query: 416 PFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 P +V+PV L+ P D +D + F ++ ++ G G G Sbjct: 408 PHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQL-EVNKDMIRKYETGDGVTGPYG 462 >gi|126456485|ref|YP_001076989.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|242311194|ref|ZP_04810211.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|126230253|gb|ABN93666.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|242134433|gb|EES20836.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] Length = 690 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509 Query: 448 VNKIYGPKE 456 + G ++ Sbjct: 510 MEGRGGLRQ 518 >gi|149911409|ref|ZP_01900027.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36] gi|149805517|gb|EDM65522.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36] Length = 489 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 115/416 (27%), Positives = 194/416 (46%), Gaps = 20/416 (4%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 + I + K LQ+ + V V + AD+++ R +Y+ GK +G N+++ D Sbjct: 44 SVRIPIFKSKTLQMDKAIHRVSVGNSDIADILILRSRELYIVGKRLGTTNMMVWDKDDNL 103 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + ++ + D+ L L +++ + +I VE +V+ G V ++ AVE++E + Sbjct: 104 VHVQNLEVTHDLNSLRKRLYKYLPNEDIGVETSQGQLVVSGQVSSLVKMNTAVEIAEGYA 163 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 + + + S+ V+N++++ G QV L+VT+AEV DI + + + S Sbjct: 164 TAANVGK----SNSIVVNMMSVGGGQQVMLEVTVAEVSTDIGRNLDGNTVLGAFGSDGFA 219 Query: 229 SFAADFGGKFVSEGGDFSVK----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G + G + F + + LAEP LTA+SGQS Sbjct: 220 GIGTGTGNVPTNILGSIDTNIFARYLTGDMLFSVAFDVAKSKGLTKILAEPNLTALSGQS 279 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340 A F SGG++ S+ ++ D+GV + F PTVL G+I L ++ VSE Sbjct: 280 AEFLSGGEYPVPV--STDDGITIEYRDFGVGVSFVPTVLDSGKINLNLKVLVSELSSVNS 337 Query: 341 IGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + ++A D PS R TTVEL G TIV+ GLL D +++ P L IPIL Sbjct: 338 VTISASDTNTSTITPSLIKRSTATTVELGDGQTIVIGGLLSDSLRESITKFPGLGDIPIL 397 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 G LF + + +TE+ I TP LV+P + P D + D + + ++ + Sbjct: 398 GQLFTSQEYISGQTELVIMVTPRLVRPFNKDGMILPTDGFVPVSDMEFYLLGKMTQ 453 >gi|134281876|ref|ZP_01768583.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|134246938|gb|EBA47025.1| type II/III secretion system protein [Burkholderia pseudomallei 305] Length = 685 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 123/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K ++L + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANMGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509 Query: 448 VNKIYGPKE 456 + G ++ Sbjct: 510 MEGRGGLRQ 518 >gi|76819084|ref|YP_336469.1| phospholipid-binding domain-containing protein [Burkholderia pseudomallei 1710b] gi|254264517|ref|ZP_04955382.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] gi|76583557|gb|ABA53031.1| Putative phospholipid-binding domain family [Burkholderia pseudomallei 1710b] gi|254215519|gb|EET04904.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] Length = 690 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509 Query: 448 VNKIYGPKE 456 + G ++ Sbjct: 510 MEGRGGLRQ 518 >gi|167829715|ref|ZP_02461186.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 9] Length = 510 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 73 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 132 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 133 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 191 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 192 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 247 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 248 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 307 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 308 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 367 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 368 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 427 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 428 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 487 Query: 448 VNKIYGPKE 456 + G ++ Sbjct: 488 MEGRGGLRQ 496 >gi|254192422|ref|ZP_04898861.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|169649180|gb|EDS81873.1| type II/III secretion system protein [Burkholderia pseudomallei S13] Length = 690 Score = 316 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509 Query: 448 VNKIYGPKE 456 + G ++ Sbjct: 510 MEGRGGLRQ 518 >gi|187927687|ref|YP_001898174.1| type II and III secretion system protein [Ralstonia pickettii 12J] gi|187724577|gb|ACD25742.1| type II and III secretion system protein [Ralstonia pickettii 12J] Length = 663 Score = 316 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 123/461 (26%), Positives = 225/461 (48%), Gaps = 35/461 (7%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 S NP++A P A+ N + G+ + + + K ++ +P V++ + +P Sbjct: 75 MTISMNPALATAP---VADVRGPNCTGAVRGES-SVVVPVGKSSLISLPEPVRNRTLGNP 130 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + SP++MYL G++VG N+I+ G G + +++++ D L+ +L + + Sbjct: 131 AVVQATMVSPQSMYLLGRSVGTTNMIVQGRSGACSI-VNVVVNADAGGLQTSLAQLMPGE 189 Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG------------RNQYANSSS 181 N IRV +D++VL G V + Q +Q+A+E++ + + + + Sbjct: 190 NKIRVMTAADSLVLAGNVSSAQAAQQAMEIAHAYAASAQSGADKGGGAAGALGGGGAAGG 249 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 V+N++ + QV L+V +AEV + +L Q+G ++ G S++ ++ Sbjct: 250 ANVINMMIVDTPQQVMLEVKVAEVSKTLLNQLGSALNVQ----GGFGSWSGGLLTSLLTG 305 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + F+ L A + + ++ LAEP L +SGQ ASF +GG+ SS Sbjct: 306 SSTGFFANKANNRPFQVELDAQKNDSLVKILAEPNLVTLSGQEASFLAGGKIYIPVAQSS 365 Query: 302 TG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGD---M 348 + ++ +YGV L FTPTV++ GRI L++ EVSE V G N + Sbjct: 366 SSGGAPTITLQEEEYGVGLKFTPTVMANGRINLKVAPEVSELSPTGATVTGANTNGQTIL 425 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P R+A TTV++ G + + GLL+D+ + + +P +IP+LG LFR+++F + T Sbjct: 426 PLITTRRASTTVQMRDGESFAIGGLLQDNARGSLKALPGAGEIPVLGTLFRSTQFQHDLT 485 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 E+ I TP LV+P+ P D +S ++ + + Sbjct: 486 ELVIVITPRLVQPMQTASYPLPTDSFSTPNELAVYLTGNME 526 >gi|82703477|ref|YP_413043.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411542|gb|ABB75651.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 574 Score = 316 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 132/487 (27%), Positives = 218/487 (44%), Gaps = 49/487 (10%) Query: 8 FFTMMSIFL-FSSNPSVAKLPPIKEANAAVINISDVEIG------KGKKISIGLNKVIIL 60 ++ I L S S A +A + + G + + K +L Sbjct: 41 ITVLLGITLGLSGELSAANQTAAGQAMGRPMVAAAKPAGPVEGLLAASDMDVTYGKSALL 100 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDILI 116 ++P V + V +P ADV + SP +Y+ GK++G NVIL G Q +++ + Sbjct: 101 RLPAPVTRISVGNPDVADVTLISPGEIYVLGKSIGTTNVILWTRGGLAGSSQTAVINVTV 160 Query: 117 ERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ----- 170 D A L+ LR + +I+V D++VL G V + RAV L++ ++ Sbjct: 161 ILDAAALQAKLRELMPGETDIKVTAAGDSLVLSGTVSDTLKADRAVALADAYVRAAAGGQ 220 Query: 171 --------------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + S +V+NLL + QV L+V +AE+ R + Sbjct: 221 GGQRGGKQGGDASGGQGGGDEPKGAGQGLGSVQVVNLLQVGSNQQVMLEVKVAEINRKVA 280 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 +++GF +G ++ G G ++ A ++ Sbjct: 281 ERLGFDFQRAARKAG--SAWTQIMTGIIGGAPGMLFQSRGTPEIGDAFLIDAEKKDELFH 338 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP + AISGQ ASF GG+ + + G ++ + +GV L FTPTVL GRI L Sbjct: 339 ILAEPNIVAISGQEASFLVGGEVMIP-IPQYAGVITLQSRQFGVGLRFTPTVLEEGRINL 397 Query: 331 RIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + EV+E V +P++ R+ TTV+L G ++ + GLL+D+I++ Sbjct: 398 VVSPEVTELVKFDTIATTGLGGVLAVPTFTTRRVSTTVQLRDGQSLAIGGLLQDNIKETI 457 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + P+L +IPILGALFR+S F +++TE+ + TP L+KP+ D + P D + D Sbjct: 458 KRFPVLGEIPILGALFRSSDFQKDKTELMVVVTPRLIKPLQP-DYALPTDAFVQPDRPDF 516 Query: 443 FFFNRVN 449 F R+ Sbjct: 517 LFDGRME 523 >gi|217424167|ref|ZP_03455666.1| outer membrane protein [Burkholderia pseudomallei 576] gi|217392632|gb|EEC32655.1| outer membrane protein [Burkholderia pseudomallei 576] Length = 673 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 214 AIAKAYSNRTNAGAAGSGVGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509 Query: 448 VNKIYGPKE 456 + G ++ Sbjct: 510 MEGRGGLRQ 518 >gi|126445563|ref|YP_001064076.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|126225054|gb|ABN88559.1| type II/III secretion system protein [Burkholderia pseudomallei 668] Length = 690 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 122/433 (28%), Positives = 218/433 (50%), Gaps = 24/433 (5%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSK------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 214 AIAKAYSNRTNAGAAGSGGGNGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM-- 271 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + G S+ ++ G ++ + A ++ LAEP Sbjct: 272 --GSAVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEP 329 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 L ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ Sbjct: 330 RLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKV 389 Query: 333 QTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 EVSE N +P R+A TTV++ G T + GL+KD+ Q + Sbjct: 390 APEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLK 449 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +P + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 ALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVY 509 Query: 444 FFNRVNKIYGPKE 456 + G ++ Sbjct: 510 ATGNMEGRGGLRQ 522 >gi|53723207|ref|YP_112192.1| outer membrane protein [Burkholderia pseudomallei K96243] gi|52213621|emb|CAH39675.1| putative outer membrane protein [Burkholderia pseudomallei K96243] Length = 690 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 389 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 449 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 450 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 509 Query: 448 VNKIYGPKE 456 + G ++ Sbjct: 510 MEGRGGLRQ 518 >gi|91788411|ref|YP_549363.1| type II and III secretion system protein [Polaromonas sp. JS666] gi|91697636|gb|ABE44465.1| type II and III secretion system protein [Polaromonas sp. JS666] Length = 514 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 134/488 (27%), Positives = 231/488 (47%), Gaps = 42/488 (8%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGK--------GKKISIGLNKVIILQVPVDVQ 67 L + NP A P K+A A + +I++ K ++++P Sbjct: 40 LAAKNPPTATSGPGKQAATAQPKAVVTQARAPITGKVELAPQINLSEGKSTLMRLPSPAT 99 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 + V D DV++ +P +Y+ GK+VG N+IL + +DI + D L L Sbjct: 100 RLSVGDARIVDVILLNPSELYMLGKSVGSTNLILWNKANDATI-IDIAVGMDTVALRSRL 158 Query: 128 RRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS------ 180 + A ++++ +DT++L GMV + + + + ++ ++ +S R+ A + Sbjct: 159 EQMFASEKDLKITTAADTLILSGMVSDVVKADQILSVANAYVQRSSRSGQAGGASGGSAG 218 Query: 181 -----SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 S KV+N+L+IA QV L+V +AEV + + Q+G ++ + + ++ Sbjct: 219 GQQSDSAKVVNMLSIAAPQQVMLEVQVAEVSKTLADQLGASIGGRKTTGSWTYTLLSNLL 278 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G S+ V + +F + A + ++ LAEPT+ AISGQ ASF +GG+ Sbjct: 279 -----TGAASSIGAVKNSGNF-LTIDAQKGDGLLKILAEPTIMAISGQEASFLAGGKIFI 332 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAG 346 S + G ++ ++GV + F PTVL GRI L++ EVS+ Sbjct: 333 PVKSGNNGEIALEEKEFGVSVKFLPTVLEGGRINLKVAPEVSDLNRQGVGISATGSSTTA 392 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +PS+ R+A TTV+L G + + GL+K+++ PLL ++P+LGALFR+S F + Sbjct: 393 ILPSFTTRRASTTVQLFDGQSFAIGGLIKNNVTANINAFPLLGEVPVLGALFRSSDFQTD 452 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 +E+ TP LVKP+ D P D Y ++ F ++ P E ++ G Sbjct: 453 RSELVFIVTPHLVKPL-PADYKLPTDPYIQPSRSEFFLGGKMEGA-APPEGNKPAGP--- 507 Query: 467 GAIGFIYK 474 A GF K Sbjct: 508 -ATGFEVK 514 >gi|167836689|ref|ZP_02463572.1| RhcC2 [Burkholderia thailandensis MSMB43] Length = 460 Score = 316 bits (809), Expect = 7e-84, Method: Composition-based stats. Identities = 123/440 (27%), Positives = 217/440 (49%), Gaps = 27/440 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +++ +L++P V ++DP ADV V +P+++++ GK G + +G + Sbjct: 35 GPVLTVAAGGGEMLKLPEPAGAVFIADPDVADVHVPTPQSVFVLGKKAGTTTLFALGSNN 94 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +L I++ D L+ L + ++ + ++++ G V + D+ V+ + Sbjct: 95 RTILRETIVVNADTPTLQRILDARFPNLHLTLTSAPGSLMVAGHVPSPSDADAVVQTLKP 154 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +L + + ++N + +A QV L+V + E+ R+I +Q+G S G+S Sbjct: 155 YLHEK----------ETLVNRMTLARPIQVHLRVRVTEIDRNITQQLGINWSAIGASGNF 204 Query: 227 SKS-------FAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTL 277 F +S G FSV G R+S + VL AL++ I LAEP L Sbjct: 205 VGGLFNGRTLFDPTSRLFNLSPTGAFSVLGGFHTSRYSVDGVLDALDQEGLITMLAEPNL 264 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 T +SG++ASF +GG+ +TGA ++ +GV L FTPTVL+ RI L+++ EVS Sbjct: 265 TTMSGETASFLAGGEFPIPVSQDTTGAITIEFKPFGVSLDFTPTVLADNRISLKVRPEVS 324 Query: 338 EP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 E + N +P+ VR+ +TTVEL SG + + GLL+ + +P L+++P+ Sbjct: 325 EIDPVNSVTSNGIRVPALTVRRVETTVELSSGQSFAIGGLLQSKTSDVLAELPGLARLPV 384 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG LF + + ++TE+ + TP++V+PV +L D + + R I Sbjct: 385 LGKLFSSKNYLNDKTEVVVIVTPYVVQPVGPGELRDALDSVTQPSSDIEYVLQRAIGI-- 442 Query: 454 PKEASEVEGQNYKGAIGFIY 473 + + GA GFIY Sbjct: 443 --DPLSGDLPRLVGAAGFIY 460 >gi|94497254|ref|ZP_01303826.1| type II and III secretion system protein [Sphingomonas sp. SKA58] gi|94423359|gb|EAT08388.1| type II and III secretion system protein [Sphingomonas sp. SKA58] Length = 486 Score = 315 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 137/455 (30%), Positives = 219/455 (48%), Gaps = 39/455 (8%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 + + P NAA ++ D I + + ++ +P + DV+ Sbjct: 4 LAGPAIAIGLAVACAAVPTSALNAATSSMQDNA------ILLSVGGSRVINLPAKMSDVV 57 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 ++DP DV V S +YL K G+ V +GK + + + + +I ++ LR Sbjct: 58 IADPEVVDVHVRSQNQLYLIAKKAGETTVFATAPNGKVLFSGTVRVGNNITSIDDMLRIA 117 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + +NI V ++ V+L G ++ +D+ L++ F+ + V++ L + Sbjct: 118 MPGANIAVNTMNGMVLLTGTIQAPEDAAEVERLTQAFVGKDVT----------VVSRLRM 167 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------ 238 A QV L+V IAEV +D+ +IG + S G A + GG Sbjct: 168 ATPLQVMLQVKIAEVAKDVGHKIGTNFASVDRSGG---KVAGNVGGGLRDFAQYNADTNS 224 Query: 239 ----VSEGGDFSVKGV--LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G +S+ GV + L E + TLA+P LTA+SG++ASF +GG+ Sbjct: 225 WDFTNPIDGGYSLGGVARILGMDIAGALDLAESSGLASTLAQPNLTALSGETASFLAGGE 284 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 + Y TVS+ S+ YGV L FTPTVL+ GRI LR++ VS +NA +P+ + Sbjct: 285 YPY-TVSNGLQGNSIEFKQYGVQLAFTPTVLADGRISLRVRPTVSSLDFSINAN-VPALK 342 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A+TTVEL SG ++AGLL ++ +P L +PILG+LF++ +F R ETE+ I Sbjct: 343 SRTAETTVELGSGQAFMIAGLLNNEASNNVNKVPGLGNLPILGSLFKSRQFQRNETELVI 402 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 TP+LVKP+ D+ P D + D + F R Sbjct: 403 VVTPYLVKPMNASDVRLPTDGFRNADLGEGLFLQR 437 >gi|134291857|ref|YP_001115626.1| type II and III secretion system protein [Burkholderia vietnamiensis G4] gi|134135046|gb|ABO59371.1| type II and III secretion system protein [Burkholderia vietnamiensis G4] Length = 647 Score = 315 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 124/433 (28%), Positives = 214/433 (49%), Gaps = 18/433 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ Sbjct: 93 AVRDSTSVSVPLGKSLLVPMPEAVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQ 152 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G +D+ + D L+ +L + + + +I V + T+VL G V Q +Q+AV Sbjct: 153 GKSGAC-RVIDVAVGADAGGLQASLLQLMPAERDIHVSTAAGTIVLAGTVSNSQAAQQAV 211 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +++ + +G + + V+N+L++ QV L+V +AEV + ++ Q+G +I G Sbjct: 212 QIARAYSDSAGGGEGGTAKGGGVLNMLSVTSPQQVMLEVKVAEVSKTLINQMGSALNIQG 271 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + ++ S V + F A ++ LAEP L IS Sbjct: 272 GFGSWSGALVSNLLAGVASAA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTIS 327 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GQ A+F +GG+ SS S T ++GV L FTPTVL+ GRI L++ EVSE Sbjct: 328 GQEATFLAGGKIFIPVPQSSGTGVSTITLQQEEFGVALKFTPTVLANGRISLKVAPEVSE 387 Query: 339 PVIG------VNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 N G +P R+A TTV++ G + + GL+KD+ + IP + Sbjct: 388 LSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGVG 447 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++P+LGALFR++ F ++ TE+ TP LVKP+ D P D +S ++A + + Sbjct: 448 EVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQSADQPMPTDSFSKPNEADVYATGNME 507 Query: 450 KIYGPKEASEVEG 462 +G + + Sbjct: 508 GRHGVRRPAAQPA 520 >gi|260778162|ref|ZP_05887055.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] gi|260606175|gb|EEX32460.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] Length = 469 Score = 315 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 112/451 (24%), Positives = 209/451 (46%), Gaps = 35/451 (7%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + +N+ ++++ + + +S+ AD + + +FG G A + ++ + + Sbjct: 27 LEVNINEAKMIRLSEKAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITVLNEQERVI 86 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + I + D L+ ++ D+++ E + + L G V T + V +++ +LS Sbjct: 87 YSNKIRVVHDTQELDELIKAQFPDASVNSESLGGKLWLKGSVPTPVMAHSIVNVAKGYLS 146 Query: 170 QSGRNQYANSS--------------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 Q +N++ +++N L + QV +++ IAEV R++ Sbjct: 147 PIVAPQESNNNDSSKSSNSSESNSENQQNSNGDELINQLVVTMPTQVNIRIRIAEVSRNV 206 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 ++G + GS + G ++ D S G + + ++ AL + Sbjct: 207 SNKLGIKW---GSLVTNGSTVENTVGSFLYNKPWDVSSWG---KPNLSALVDALASTGDM 260 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 LAEP LTA+SG+ A+F GG+ + T +V +GV L+F P VL P RI Sbjct: 261 SILAEPNLTAMSGEEANFLVGGEVPIPLIQGDT--ATVEYKPFGVNLNFKPVVLGPDRIS 318 Query: 330 LRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L+++ EVS + +N +PS+ R+A TT+EL SG + L GLL+ + + + Sbjct: 319 LKVEPEVSSVSVDNQAVLNGNVLPSFTSRRASTTIELASGQSFALGGLLQSSEIEQLQKL 378 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF- 444 P + IPILG LFR++ + R ETE+ I AT +LV+P +L P D + D + Sbjct: 379 PGMGDIPILGGLFRSNEYQRRETELIIIATAYLVEPTRSDNLPIPTDALIPQSDLERLLA 438 Query: 445 FNRVNKIYGPKEASEVEGQNYK--GAIGFIY 473 + + +A+ + + + G GF Y Sbjct: 439 LPDEDFVGTSGKATYTDNRKPRLLGDNGFYY 469 >gi|167821374|ref|ZP_02453054.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 91] Length = 494 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 122/435 (28%), Positives = 218/435 (50%), Gaps = 20/435 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 64 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 123 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 124 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 182 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 183 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 238 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 239 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 298 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 299 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 358 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 359 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 418 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 419 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 478 Query: 448 VNKIYGPKEASEVEG 462 + G ++ Sbjct: 479 MEGRGGLRQHGAAPA 493 >gi|332188377|ref|ZP_08390102.1| bacterial type II and III secretion system family protein [Sphingomonas sp. S17] gi|332011606|gb|EGI53686.1| bacterial type II and III secretion system family protein [Sphingomonas sp. S17] Length = 511 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 131/453 (28%), Positives = 214/453 (47%), Gaps = 42/453 (9%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + I + ++ +P + D+ V+D T ADV V SP +Y+FGK G+ + G Sbjct: 49 AGVLEINTGRARLITLPRPMTDLFVADDTIADVQVRSPTQLYIFGKKPGETTISATARGG 108 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + I ++ + LR + ++ I ++ ++L G V D A L + Sbjct: 109 AVVYATTVRIGNNLDSIGRMLRLAMPEAQIASTPMNGLILLTGTVAAPDDVAEAERLVQA 168 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------- 217 ++ + KV++ L A QV L+V IAEV R+ +K IG Sbjct: 169 YVGKDT----------KVISRLKTATPLQVNLQVRIAEVNRNFVKSIGVNLLNRDRNSSG 218 Query: 218 ------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 +IT ++ + +G + G + + E Sbjct: 219 FVFGIGSGRNPGTITDLTNAAGTTIGTQYGFNQGPLRTTLGLGGRVLGMDLLGAMDLGET 278 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + TLA P LTA+SG++A+F +GG+ +S+ GA SV YGV L +TPTVLS Sbjct: 279 LGQVSTLANPNLTALSGETATFLAGGEIPIP-LSTGLGAVSVEYKQYGVSLSYTPTVLSD 337 Query: 326 GRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 GRI LR++ EVS+ + ++ +P+ R+A+TT+EL SG ++++ GLL + Sbjct: 338 GRISLRVRPEVSQITSVGAVTISGTTIPALTTRRAETTLELGSGQSMMIGGLLSNSRDNS 397 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDA 440 E P L +P++GALFR++ F R ETE+ I TP+LVKPV + D++ P D +DA Sbjct: 398 IEKTPWLGDLPLIGALFRSNAFKRNETELVIIITPYLVKPVNSPSDIALPTDGQRSPNDA 457 Query: 441 KAFFFNRVNKIYG-----PKEASEVEGQNYKGA 468 + R+ P A+ V+G+ GA Sbjct: 458 ERVLLGRMAAGSSEPRPVPTMATPVQGRPVTGA 490 >gi|220918104|ref|YP_002493408.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955958|gb|ACL66342.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 477 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 132/491 (26%), Positives = 225/491 (45%), Gaps = 44/491 (8%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDV 69 M++ L + LPP++ A A+ + D +G G ++++ + +L + ++ V Sbjct: 1 MIAHTLLALALFATPLPPVELAAGALPPLRIDRSVGAGSELALEAGQNRLLIISEEIGRV 60 Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 V+DP+ AD+ V + + L K+ G ++ L + L + +++ R++ L ++ Sbjct: 61 AVADPSVADLKVVTTNQLLLTAKSSGTTDLTLWNRSN-EPLVIALVVTRNLEPLRKQVKD 119 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + + + V+L G V ++ +R VE+++ K+V NL+ Sbjct: 120 LFPGEKVTITGAGELVILSGEVSDVRIPERLVEVAKLHA-------------KQVANLVK 166 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------DFGGKFVSEGG 243 ++G QV L+V AEV R L+QIG S+ D G G Sbjct: 167 VSGNQQVQLEVRFAEVSRSGLRQIGVNLFHQSSNGEVVTGMTGRGIIPTDLGVPGTGTAG 226 Query: 244 --------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 V + F F +L LE+ +TLAEPTL +SGQ A F + Sbjct: 227 APPPIFRPQFNNGFSMFVSSLSGDFPFSAMLSLLEQNGLSKTLAEPTLVTLSGQQARFVA 286 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345 GG+ + S G T V +G++L FTPTV++ I L ++ EVS+ I + Sbjct: 287 GGELPIP-LGGSFGQTQVEWKKFGILLDFTPTVIAGDTIHLDLKAEVSDIDQSLAITIGG 345 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P R+++TT+ L G + +AGLL D ++ E +PLL IPILGALFR++++ R Sbjct: 346 TTIPGLTSRQSETTIRLGDGQSFAIAGLLSDRVRSQIERVPLLGSIPILGALFRSTQYKR 405 Query: 406 EETEIFIAATPFLVKPVAMRDL-SRPDDH-YSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 EE+E+ + T L +PVA L P + + D + F + ++ Q Sbjct: 406 EESELLVVVTARLARPVAPHQLPPLPTERELNHPGDIELFLLGWDDGGKQVPRSAPSTRQ 465 Query: 464 N--YKGAIGFI 472 GA GF+ Sbjct: 466 AGGPSGARGFV 476 >gi|27376953|ref|NP_768482.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110] gi|27350095|dbj|BAC47107.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110] Length = 430 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 121/435 (27%), Positives = 200/435 (45%), Gaps = 17/435 (3%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 ++I ++ + + + V+DP AD S T+++FGK G+ ++ + Sbjct: 8 STTGTLNITSSQGKTVHLSAPAATIFVADPAIADYQAPSSSTIFVFGKKSGRTSLFALNE 67 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 +G+ + L I++ + + L L+ + D I+V +L G+ + A +++ Sbjct: 68 NGEALAELRIVVTQPLEDLRAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVEAARKVT 127 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 E F+ V+N + +AG QV L V +AEV R +K + + +G + Sbjct: 128 EQFVGAGAP----------VVNKIQVAGSLQVNLSVRVAEVSRTAVKDLNINFTASGPN- 176 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G + G GG + + VL AL LAEP LTA+SG++ Sbjct: 177 GAFLATGKPGGSGRAGGGGTIGIGFSTGNINLSAVLDALASEHLASILAEPNLTAMSGEA 236 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---- 340 ASF +GG+ + SV +GV L F PTVLS +I +R++ EVSE Sbjct: 237 ASFLAGGEFPIPVM-QDNRQVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSELSTEGE 295 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + +N +P+ R+A T VEL SG + + GL++ + P L +PILGALFR+ Sbjct: 296 VKINGMAVPALSTRRASTVVELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPILGALFRS 355 Query: 401 SRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 S F + ETE+ I TP++V+P +S P + + DA N V + ++A Sbjct: 356 SSFQKRETELVIVVTPYIVRPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQGRDAPR 415 Query: 460 VEGQNYKGAIGFIYK 474 G GFI + Sbjct: 416 ASAPGLTGNAGFIIE 430 >gi|254293214|ref|YP_003059237.1| type II and III secretion system protein [Hirschia baltica ATCC 49814] gi|254041745|gb|ACT58540.1| type II and III secretion system protein [Hirschia baltica ATCC 49814] Length = 535 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 158/538 (29%), Positives = 262/538 (48%), Gaps = 80/538 (14%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG---KGKKISIGLNKVIIL 60 +++ + + + S + + I + E G + +++ NK +L Sbjct: 9 IKKILLSACVAAIGFGSESAFAQNSLAGGVSETIRVRVTEPGQSATSRTLNLSQNKTAVL 68 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI-ERD 119 + DV D+LV++P ADV+ S R + + K G++++I GK++L+LD+++ + Sbjct: 69 EFEEDVDDILVANPEIADVLARSKRRIAVLAKGKGESSIIFTNAQGKEILSLDVIVAGQG 128 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 ++ L+ + +++ S I+ E V+ +VL G ++ D+ A++L++ F+ Sbjct: 129 VSELQALIEQYVPRSAIKAEFVNGAIVLAGKSPSLSDADMAIQLAQQFVVDDSP------ 182 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------------- 222 V+N+++I G+DQV LKV I E++R ++KQ+G S + + Sbjct: 183 ----VINMISIEGKDQVLLKVRIVEMQRSVIKQLGVNLSGSMNIGELANKSVQTAYDAVT 238 Query: 223 -------------------------SSGPSKSFAAD---FGGKFVSEGGDFSVKGVLDRF 254 S G S S GG +S + V L Sbjct: 239 GEVLLDAAGEALQVLAPAAPWDQSVSFGTSNSLGISGESLGGMSLSPSYNNYVGDKLQS- 297 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 S + LER +RTLAEP LTA+SG+SA F +GG+ + S G + +GV Sbjct: 298 SAGFSVDMLERIGLVRTLAEPNLTALSGESAKFLAGGEFPVPSEVDSDGEVVLEFKPFGV 357 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE-------------------PVIGVNAGDMPSYRVRK 355 L FTP VLS RI +RI TEVSE + A +P+ +VR+ Sbjct: 358 GLGFTPVVLSESRISMRISTEVSELTSTGGYQIGGTTYVDGAGNTVSTPAVVIPALKVRR 417 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ADTTVE+PSGG++V+AGL+++ Q + +P + +P++G+LFR+ F ETE+ + T Sbjct: 418 ADTTVEMPSGGSLVIAGLIQEQTSQAMDKVPGVGNLPVIGSLFRSREFQNNETELVVIVT 477 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 P+LV P + L PDD Y DAKA FF ++N++Y + A E GA GFI+ Sbjct: 478 PYLVDPTDPKKLRSPDDGYVAAKDAKAIFFGKMNEVYAVEGADVEETAGINGA-GFIF 534 >gi|295690798|ref|YP_003594491.1| type II and III secretion system protein [Caulobacter segnis ATCC 21756] gi|295432701|gb|ADG11873.1| type II and III secretion system protein [Caulobacter segnis ATCC 21756] Length = 564 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 152/522 (29%), Positives = 236/522 (45%), Gaps = 92/522 (17%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 N V + + + K I+++P DV+D+LV+ PT AD V+ R +Y+ G Sbjct: 55 NGQVARVVLTADQTAATLELAKGKSAIVELPADVRDLLVTSPTVADAVLRDRRRVYIVGL 114 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G + G+++L+L I + + + L TL R + D+ I V + D+VVL G VR Sbjct: 115 AEGVTDAAFFDDAGRRILSLSIKVSQPVDQLADTLSRVLPDAKIEVRPIRDSVVLSGTVR 174 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + S A ++ ++ KV+N+L+IAG+DQV L+V I EVRR+++KQ Sbjct: 175 SPAQSDAAARIAAQYVG----------GPDKVLNMLSIAGKDQVMLQVRIVEVRRNVIKQ 224 Query: 213 IGFQHSITGSSSG---------PSKSFAADFGGKFVS----------------------- 240 +G + G P+ S + G Sbjct: 225 LGVDLNAVLGQLGQSQYSFGLSPTYSVNGNLLGGVTGGYKLDTTKQPTLQIPCGNGVGDA 284 Query: 241 ------------------------------EGGDFSVKGVLDRFSFETVLHALERATAIR 270 G + ++ A ER +R Sbjct: 285 KCLAVVHGKVYHTGVIDPTTGREIVVGNGDTATISDTAGSTGVNQAKGMIQAFERVGLVR 344 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 TLAEP LTA+SG++ F GG+ T S +TG ++ YGV L +TP V+S GRI L Sbjct: 345 TLAEPNLTAVSGEAGHFLVGGEFPVPTGSDATGKIAIEFKPYGVGLGYTPVVMSGGRISL 404 Query: 331 RIQTEVSEPVI-----------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 +I TEVSE +P VR+A+TTVELPSGG+ ++AGL Sbjct: 405 KISTEVSELSSLGAFTISNSTTSGNTTTTSAPLTVPGLSVRRAETTVELPSGGSFMIAGL 464 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L+ +Q + +P ++ +PILG+LFR+ F ETE+ I TP++V P RDL P D Sbjct: 465 LQQTTKQAIDALPGMTNMPILGSLFRSRDFLNGETELVIIVTPYIVDPAKPRDLQTPADG 524 Query: 434 YSVEDDAKAFFFNRVNK-IYGPKEASEVEGQNYKGAIGFIYK 474 + D R+N+ + P A+ G+ Y+G +G++ + Sbjct: 525 LRMAGDMSTVLLGRLNQVVKAPPGAN--AGRAYQGPVGYVIE 564 >gi|254255254|ref|ZP_04948570.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa AUO158] gi|124900991|gb|EAY71741.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa AUO158] Length = 682 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 122/417 (29%), Positives = 211/417 (50%), Gaps = 19/417 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ Sbjct: 93 AVRDSTSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGMSVGTTNMIVQ 152 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G +D+ + D A L+ +L + + + + V + T+VL G V + Q +Q+AV Sbjct: 153 GKSGAC-RVIDVAVGADAAGLQASLMQLMPNERDVHVSTAAGTIVLSGSVSSSQAAQQAV 211 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 ++ + S + V+N+L++ QV L+V +AEV + ++ Q+G +I G Sbjct: 212 AIARAY-GDSAGDGNGGGKPGSVLNMLSVTSPQQVMLEVKVAEVSKTLINQLGSAFNIQG 270 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + ++ S V + F + A ++ LAEP L IS Sbjct: 271 GFGSWSGALVSNLLAGVASGA----VFNKANNRPFSVAVDAQNTDNLVKILAEPNLVTIS 326 Query: 282 GQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 GQ A+F +GG+ SS T+ + ++GV L FTPTVL+ GRI L++ EVSE Sbjct: 327 GQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVALKFTPTVLANGRISLKVAPEVSE 386 Query: 339 PVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 A +P R+A TTV++ G T + GL+KD+ + IP + Sbjct: 387 LSQTGVTLSATNVSGASILPLITTRRASTTVQMSDGETFAIGGLIKDNASGALKAIPGVG 446 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 ++P+LGALFR++ F ++ TE+ TP LVKP++ D++ P D +S ++A + Sbjct: 447 EVPVLGALFRSTSFQQDRTELIFVITPHLVKPLSTADVALPTDSFSKPNEADVYATG 503 >gi|167744175|ref|ZP_02416949.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 14] Length = 439 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 122/437 (27%), Positives = 218/437 (49%), Gaps = 20/437 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 7 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 66 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 67 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 125 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 126 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 181 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 182 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 241 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 242 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 301 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 302 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 361 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 362 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 421 Query: 448 VNKIYGPKEASEVEGQN 464 + G ++ Sbjct: 422 MEGRGGLRQHGAAPAAA 438 >gi|167841773|ref|ZP_02468457.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 484 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 127/435 (29%), Positives = 221/435 (50%), Gaps = 26/435 (5%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 16 EMRESTNVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 75 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 76 GKSGACQI-IDVAVGADADGLQTSLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 134 Query: 162 ELSETFLSQSGRNQYAN--------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 +++ + ++ N SS V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 135 AIAKAYSDRTNAGAAGNGNGNGGGGSSRADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM 194 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 + G S+ ++ G V ++ + A + ++ LA Sbjct: 195 ----GSAVNIQGGFGSWTGALMTSLLTGVGSGIVASKSNKLPLSGAIDAQDTDQPVKILA 250 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 EP L ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L Sbjct: 251 EPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISL 310 Query: 331 RIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 ++ EVSE N +P R+A TTV++ G T + GL+KD+ Q Sbjct: 311 KVAPEVSELSPTGVTLSASNVGNVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGT 370 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 + +P + ++P+LGALFR++ F ++ TE+ TP LVKP+ D+ P D ++ ++A Sbjct: 371 LKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLDTADVPLPTDSFTKPNEAD 430 Query: 442 AFFFNRVNKIYGPKE 456 + + G ++ Sbjct: 431 VYATGNMEGRGGLRQ 445 >gi|254418362|ref|ZP_05032086.1| Putative phospholipid-binding domain family [Brevundimonas sp. BAL3] gi|196184539|gb|EDX79515.1| Putative phospholipid-binding domain family [Brevundimonas sp. BAL3] Length = 517 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 138/511 (27%), Positives = 247/511 (48%), Gaps = 69/511 (13%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82 +A L A A + + I++ + +P D +DV+V++P A+ ++H Sbjct: 17 LAGLGAAPVAGLAQTRAAVSMGAAPQLINLPRGTSFAVDLPADARDVIVANPQVAEAMLH 76 Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142 SPR + + G G+ + + + G+ +L+L + ++ + L+ TL R + S IR E V+ Sbjct: 77 SPRRITVIGIAPGETDAVFLDAAGRTILSLRVRVDAGTSALQDTLSRLVPGSQIRAEAVN 136 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 D+V+L G+ + + +A +++ F+ S+ +KV+N+++IAG DQVTLKV + Sbjct: 137 DSVILSGVADSPAQAVQAAQVARAFV----------SAPEKVLNMISIAGSDQVTLKVRV 186 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-------------- 248 EV+R +KQ+GF S G ++ + V+ G + Sbjct: 187 VEVQRSAIKQLGFDTSAVVGQLGSTQWLLGNSATWGVNGGLIGGISAGLSRDTTKNYQMQ 246 Query: 249 ------------------------------------GVLDRFSFETVLHALERATAIRTL 272 G D + A ER +RTL Sbjct: 247 RPCVGPGWTPGALCPVTVRGPDDASNWDTAQPGTGPGSNDLNKGSATVKAFERVGLLRTL 306 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 AEP LT+++G++ASF +GG+ + G +V YGV L F P VL GRI L++ Sbjct: 307 AEPNLTSVNGEAASFLAGGEFPIPSGRDRDGNITVVYKPYGVALSFRPVVLDAGRISLQV 366 Query: 333 QTEVSEPVI---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + EVSE ++ +P VR+++ TVEL SGG++++AGLL+++ +Q + Sbjct: 367 KVEVSELTSQGGLTIGAGTTSSVSLPGLSVRRSENTVELSSGGSMMIAGLLQENTRQAID 426 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +P ++ +P+LG LFR+ + ETE+ + P++V P + + P D + D++ Sbjct: 427 ALPGMTNLPVLGQLFRSRDYLNGETELVVIVEPYIVSPTSPDRMQTPADGLRIASDSQTI 486 Query: 444 FFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 F ++N+IYG + G ++GA G++ + Sbjct: 487 LFGQLNQIYGSPSPTAQSGAVWQGAAGYVIE 517 >gi|167908129|ref|ZP_02495334.1| type II/III secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 460 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 123/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K ++L + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 20 EMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 79 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 80 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 138 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 139 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 194 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 195 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 254 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 255 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 314 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 315 SELSPTGVTLSAANMGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 374 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 375 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 434 Query: 448 VNKIYGPKE 456 + G ++ Sbjct: 435 MEGRGGLRQ 443 >gi|294139870|ref|YP_003555848.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12] gi|293326339|dbj|BAJ01070.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12] Length = 442 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 127/428 (29%), Positives = 196/428 (45%), Gaps = 52/428 (12%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 +++ LNK ++Q+P + + +S T AD + + +FGK G ++ ++ D Sbjct: 2 TLAVTLNKAELVQLPKTAKSIFISSNTIADYQALTNTKIMVFGKRAGTTSLYVLDADENV 61 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + + + + ++ L +R D+ + E ++ + L G V T +++ V LSE ++ Sbjct: 62 IYSASVKVSHNVTELNGLIRSEFPDALVSAESIAGKLFLKGRVPTPTMAEKIVRLSEGYV 121 Query: 169 SQ----SGRNQYANSSSK------------------------KVMNLLNIAGEDQVTLKV 200 SQ G+ Q SS + +++N L I QV L+V Sbjct: 122 SQPQSSKGKQQGGKSSGQAKGSKQQGQNGGGQESQSGTGSKGELINQLEITMSTQVNLRV 181 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 IAEV R++ ++G + G +G F+ L ++ Sbjct: 182 RIAEVSRNVSNKLGIKWGSQGFGTG------------------KFAFSDGLGFSKLSVMV 223 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 AL I LAEP LTAISG+ ASF GG+ + T S+ +GV L F P Sbjct: 224 DALATNGMITVLAEPNLTAISGEKASFLVGGEVPIPLIYGDT--VSIEYKPFGVRLDFKP 281 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNA----GDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TVLSP RI L+I+ EVS N P + RKA TT+EL SG + L GLL+ Sbjct: 282 TVLSPNRISLQIEPEVSTISQSTNVVMGDSSFPVFMTRKASTTIELASGQSFALGGLLQS 341 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + + +P + IPILGALFR++ F REETE+ I AT +LV+P L P D Sbjct: 342 TDIEQMQKMPWIGDIPILGALFRSNEFKREETELIIIATVYLVEPTRGDSLPLPTDGLIP 401 Query: 437 EDDAKAFF 444 D + Sbjct: 402 MSDVERLL 409 >gi|83716099|ref|YP_440456.1| type II and III secretion system protein [Burkholderia thailandensis E264] gi|83649924|gb|ABC33988.1| Bacterial type II and III secretion system protein domain protein [Burkholderia thailandensis E264] Length = 679 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 127/430 (29%), Positives = 219/430 (50%), Gaps = 21/430 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 +G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 AMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +++ + ++ V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 214 AIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----G 269 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G S+ ++ G+ ++ + A ++ LAEP L Sbjct: 270 SAVNLQGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRLV 329 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS TS T ++GV L FTPTVLS GRI L++ E Sbjct: 330 TISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAPE 389 Query: 336 VSEPVIG------VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N G + P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 390 VSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKALP 449 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A + Sbjct: 450 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYATG 509 Query: 447 RVNKIYGPKE 456 + G ++ Sbjct: 510 NMEGRGGLRQ 519 >gi|167899813|ref|ZP_02487214.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 7894] Length = 473 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 37 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 96 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 97 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 155 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 156 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 211 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 212 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 271 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 272 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 331 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 332 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 391 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 392 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 451 Query: 448 VNKIYGPKE 456 + G ++ Sbjct: 452 MEGRGGLRQ 460 >gi|167851182|ref|ZP_02476690.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei B7210] Length = 449 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 123/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K ++L + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 15 EMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 74 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 75 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 133 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 134 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 189 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 190 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 249 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 250 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 309 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 310 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 369 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 370 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 429 Query: 448 VNKIYGPKE 456 + G ++ Sbjct: 430 MEGRGGLRQ 438 >gi|319783874|ref|YP_004143350.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169762|gb|ADV13300.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 482 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 122/410 (29%), Positives = 196/410 (47%), Gaps = 17/410 (4%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V K I + K + +++ DP A+V + ++ Y+ G N+G + L Sbjct: 47 VSSTKNASIKVAKGKPKTIITSAAFYQIVIGDPEIANVNPLTDKSFYVLGNNLGTTGIAL 106 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + + +DI + D L T+R + D+ I+V + VVL G +++A Sbjct: 107 FDEKKQLVGTVDIEVTLDTDQLASTIRASVPDARIKVGSANGRVVLSGEADDAVAAEKAN 166 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +++ F S +++V+N +NI+ QV L V E+ R + +G +++ Sbjct: 167 KIATRF-----------SGAEEVINSVNISSSQQVQLNVRFVEINRQAGQDLGAKYAANF 215 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + + D G + G+ + + + S + + ALE R LAEP L A S Sbjct: 216 AYGLGGRDVSIDPGTVPTAGTGEIIGRLLSNGVSIDIAIKALEERGLARRLAEPNLIARS 275 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 GQ+ASF +GG+ VS G SV+ YGV L FTPTVL G + L I EVS Sbjct: 276 GQTASFLAGGEFPIP-VSEDNGKISVSYKKYGVSLDFTPTVLKDGLVSLDIAPEVSSIDA 334 Query: 342 GVNAG----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + +P + VR+A T+V+L +G + ++AGLL+ IP L K+P+LGAL Sbjct: 335 SASYNIGTISVPGFIVRRARTSVDLKNGQSFMIAGLLQSQNDITTSRIPGLGKMPVLGAL 394 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFN 446 F + + R ET++ I TP+LVKPV + L P D +A F N Sbjct: 395 FSSKSYQRRETDLVIIVTPYLVKPVDPSKKLVEPTDGTQPASNADYFLNN 444 >gi|294012433|ref|YP_003545893.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] gi|292675763|dbj|BAI97281.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] Length = 499 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 136/466 (29%), Positives = 224/466 (48%), Gaps = 32/466 (6%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 ++ + P NAA ++ D I + + ++ +P + DV+ Sbjct: 14 LLGPAIALGLAVAVAAAPTSALNAAPASMQDNA------ILLSVGGSKVINLPAKMSDVV 67 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 + DP DV V S +YL K G+ V +GK + + + + ++ ++ L+ Sbjct: 68 IGDPDVVDVHVRSQNQLYLIAKKAGETTVFATATNGKVLFSGTVRVGNNLTSIDDMLKLA 127 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + +++I V ++ V+L G + +D+ A L++ F+ + V++ L Sbjct: 128 MPNADIAVNKMNGMVLLTGTIAAPEDAAEAERLTQAFVGKEVT----------VVSRLRT 177 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-----------SFAADFGGKFV 239 A QV L+V IAEV RD+ +IG + G +F + GG F Sbjct: 178 ATPLQVNLQVKIAEVSRDVGHKIGMNWKSQDLTGGKWAGGIGGGTRDAITFNSGGGGTFN 237 Query: 240 -SEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G +S+ GV VL E + TLA+P LT++SG++ASF +GG++ Y Sbjct: 238 FTADGGYSLGGVARVLGLDIGAVLDLAESSGLATTLAQPNLTSLSGETASFLAGGEYPY- 296 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 TVS+ T S+ YGV L FTPTVL+ GRI LR++ VS V++ +P+ R R A Sbjct: 297 TVSNGTQGNSIEFKQYGVQLAFTPTVLADGRISLRVRPTVSSLDFSVDS-SVPALRSRTA 355 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +TTVEL SG ++AGLL +D +P + +PILG+LF++ F R ETE+ I TP Sbjct: 356 ETTVELGSGQAFMIAGLLNNDTANSISKVPGIGNLPILGSLFKSRNFQRHETELVIVVTP 415 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 +LVKP+ D+ P D + ++ + F + + A Sbjct: 416 YLVKPMNASDVRLPTDGFRNANEGQGLFLQQGHDGISGAHAPMPSR 461 >gi|90406750|ref|ZP_01214943.1| RhcC2 protein [Psychromonas sp. CNPT3] gi|90312203|gb|EAS40295.1| RhcC2 protein [Psychromonas sp. CNPT3] Length = 459 Score = 312 bits (800), Expect = 8e-83, Method: Composition-based stats. Identities = 123/457 (26%), Positives = 202/457 (44%), Gaps = 43/457 (9%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 + K +++ L++ +L +P + + ++ AD + + +FGK VG ++ ++ Sbjct: 18 AQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTKIMIFGKRVGSTSLYVLDA 77 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 + + + + ++ L ++ ++ + E + + L G V T +++ V L+ Sbjct: 78 RENVIYSATVKVNHNVQELNALIKHEFPNAQVHSESTAGKLFLKGQVSTPSIAEKIVRLA 137 Query: 165 ETFLS---------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 E ++S Q G + + ++++++N L I QV L+V IA Sbjct: 138 EGYVSSNGGKSESAGAATEGGAQDDQQGGESAQSTQNTQELINQLVITMPTQVNLRVRIA 197 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 EV R++ ++G + G G + + ++ AL Sbjct: 198 EVSRNVSNKLGIKWGAQNI-------------GTISGTFGTKNWLPNVKFPDLSIMIDAL 244 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 I LAEP LTAISG+ ASF GG+ V + ++ +GV L F PTVL Sbjct: 245 ASNGLISILAEPNLTAISGERASFLVGGEIPLPVVFGD--SANIIYKPFGVRLDFKPTVL 302 Query: 324 SPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 S RI L+I+ EVS N +P + RKA TT+EL SG + + GLL+ Sbjct: 303 SANRIRLQIEPEVSTIAPRTNVQIGGSSLPVFITRKASTTIELASGQSFAIGGLLQSKDI 362 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 + + IPLL IPILGALFR+S F REETE+ I AT +LV+P S P D D Sbjct: 363 EQLQKIPLLGDIPILGALFRSSEFQREETELIIIATVYLVQPTRSDKFSLPTDGLLPLSD 422 Query: 440 AKAFFF---NRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + +V +S G GF Y Sbjct: 423 IERLLAWPHKKVTPTTMGSFSSTPSQPRLLGDNGFYY 459 >gi|167725247|ref|ZP_02408483.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei DM98] Length = 448 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 15 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 74 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 75 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 133 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 134 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 189 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 190 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 249 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 250 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 309 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 310 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 369 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 370 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 429 Query: 448 VNKIYGPKE 456 + G ++ Sbjct: 430 MEGRGGLRQ 438 >gi|167916476|ref|ZP_02503567.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei 112] Length = 452 Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats. Identities = 122/429 (28%), Positives = 218/429 (50%), Gaps = 20/429 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 15 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 74 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 75 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 133 Query: 162 ELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 134 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 189 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 190 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 249 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ISGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EV Sbjct: 250 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEV 309 Query: 337 SEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE N +P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 310 SELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPG 369 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + Sbjct: 370 IGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGN 429 Query: 448 VNKIYGPKE 456 + G ++ Sbjct: 430 MEGRGGLRQ 438 >gi|167617230|ref|ZP_02385861.1| Bacterial type II and III secretion system protein domain protein [Burkholderia thailandensis Bt4] Length = 468 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 127/430 (29%), Positives = 219/430 (50%), Gaps = 21/430 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 +G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 16 AMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 75 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 76 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 134 Query: 162 ELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +++ + ++ V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 135 AIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----G 190 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G S+ ++ G+ ++ + A ++ LAEP L Sbjct: 191 SAVNLQGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRLV 250 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS TS T ++GV L FTPTVLS GRI L++ E Sbjct: 251 TISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAPE 310 Query: 336 VSEPVIG------VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N G + P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 311 VSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKALP 370 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A + Sbjct: 371 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYATG 430 Query: 447 RVNKIYGPKE 456 + G ++ Sbjct: 431 NMEGRGGLRQ 440 >gi|167579115|ref|ZP_02371989.1| Bacterial type II and III secretion system protein domain protein [Burkholderia thailandensis TXDOH] Length = 462 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 127/430 (29%), Positives = 219/430 (50%), Gaps = 21/430 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 +G+ +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 16 AMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 75 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 76 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 134 Query: 162 ELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +++ + ++ V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 135 AIAKAYSDRTNAAALGGGGGGPRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----G 190 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G S+ ++ G+ ++ + A ++ LAEP L Sbjct: 191 SAVNLQGGFGSWTGALVTSLLTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRLV 250 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTE 335 ISGQ A+F +GG+ SS TS T ++GV L FTPTVLS GRI L++ E Sbjct: 251 TISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAPE 310 Query: 336 VSEPVIG------VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 VSE N G + P R+A TTV++ G T + GL+KD+ Q + +P Sbjct: 311 VSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKALP 370 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 + ++P+LGALFR++ F ++ TE+ TP LVKP+A D+ P D ++ ++A + Sbjct: 371 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYATG 430 Query: 447 RVNKIYGPKE 456 + G ++ Sbjct: 431 NMEGRGGLRQ 440 >gi|51245387|ref|YP_065271.1| hypothetical protein DP1535 [Desulfotalea psychrophila LSv54] gi|50876424|emb|CAG36264.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 480 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 130/489 (26%), Positives = 213/489 (43%), Gaps = 41/489 (8%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 F M + P E+ A V+ + G+ + + +N++ L+ ++ Sbjct: 7 FVRMLTVSICCLLVMGGGPFAAESEATVL----INTKPGEPVQLTINRLAKLRSSEVIRR 62 Query: 69 VLVSDPTKADV---VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 + +P A++ SP +++ GK++G + L G K + +I++ D+ L+ Sbjct: 63 AHIVNPDIAELIYSKTQSPAWVFVSGKSIGTTQLTLWGARNKILGTFEIIVRPDVLGLKK 122 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 + N+ V D + L G V Q+ + L+E + + KV+ Sbjct: 123 HIHDVFPGENVSVRDSGDFLTLTGTVAGAVRLQKILALAEAY------------APSKVI 170 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGKFVSEG 242 NLL + G QV L+V IAE+ + + Q+G + GSS + GG E Sbjct: 171 NLLKVGGIQQVMLEVRIAEISKRVGNQLGINFGLDGSSGFGLSMLDGLSGLPGGTLPIEP 230 Query: 243 ---------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G S+ + AL+ ++ LA+PTL A SGQSASF +GG+ Sbjct: 231 ARVLDGLNIGSGVNAVFGKSGSYIVAIDALQEDGLVKVLAKPTLIAQSGQSASFLAGGEF 290 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMP 349 + S+ +GV L+FTPTVL GRI L + EVS+ I +P Sbjct: 291 PFPVAQQFDRF-SIEWKPFGVGLNFTPTVLGEGRISLLVSPEVSDLDFTNTISYAGYVVP 349 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 S R+ T VEL + +AGL+K++I++ + PLL IPILG LFR+S++ + ETE Sbjct: 350 SIETRRMSTVVELNDNQSFAIAGLMKNNIRESIKKFPLLGDIPILGVLFRSSKYIKNETE 409 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK-----EASEVEGQN 464 + + TP LV PV +LS P D + + + A+ Sbjct: 410 LVVVVTPHLVTPVDGDELSLPTDSFVEPTAFELLVLGMLEGKEKQTYVENASATGANSLP 469 Query: 465 YKGAIGFIY 473 +G G+I Sbjct: 470 LEGDFGYIV 478 >gi|113866744|ref|YP_725233.1| flp pilus assembly protein secretin [Ralstonia eutropha H16] gi|113525520|emb|CAJ91865.1| flp pilus assembly protein secretin [Ralstonia eutropha H16] Length = 618 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 111/435 (25%), Positives = 207/435 (47%), Gaps = 22/435 (5%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88 + A N + I + + + K ++ + V++ + +P + SP+T+Y Sbjct: 74 VTSGEARGPNCT-GAIRSESSVMVPVGKSQLITLQEPVRNRTLGNPNVVQATMVSPQTLY 132 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVL 147 + G+ VG N+I+ G G + +++++ D L+ +L + + IRV +D +VL Sbjct: 133 VLGRAVGTTNMIVQGRSGSCSI-INVVVNADAGGLQTSLGQLLPGEPGIRVMTAADNLVL 191 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V Q +Q+A+E+++ + + + V+N+L++ QV L+V +AEV + Sbjct: 192 TGSVTNAQTAQQAMEIAQAYANAAQGGDGNKKGG--VLNMLSVDTPQQVMLEVKVAEVSK 249 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 +L Q+ T + G S++ ++ + F+ + A + + Sbjct: 250 TLLNQL----GSTVNLQGGFGSWSGGLVTSLLTGASSAIFASKANNRPFDIAIDAQKNDS 305 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVL 323 ++ LAEP L ISGQ ASF +GG+ + G ++ ++GV L FTPTVL Sbjct: 306 LVKILAEPNLVTISGQEASFLAGGKIYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVL 365 Query: 324 SPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 + GRI L++ EVSE +P R+A TTV++ G + + GLL Sbjct: 366 ANGRIHLKVSPEVSELSPTGATIRGGTLAGQSILPVITTRRASTTVQMRDGESFAIGGLL 425 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 D + + +P ++P+LG LFR++++ ++ TE+ TP LVKP+ + P D + Sbjct: 426 TDSARGSLKALPGAGEVPVLGTLFRSTQYQQDLTELVFVITPRLVKPMQTSNYPLPTDSF 485 Query: 435 SVEDDAKAFFFNRVN 449 S + +F + Sbjct: 486 STPNPLSLYFMGNME 500 >gi|167584957|ref|ZP_02377345.1| type II and III secretion system protein [Burkholderia ubonensis Bu] Length = 536 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 120/436 (27%), Positives = 213/436 (48%), Gaps = 19/436 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + + +S+ L K +++ +P V++ + +P A + SP+T+Y+ G +VG N+I+ Sbjct: 82 AVRESTSVSVPLGKSMLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIVQ 141 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +L + + I V +DT+VL G V + Q +Q+A Sbjct: 142 GKSGACRI-IDVAVGADAGGLQASLGQLMPGERDIHVSTAADTIVLAGNVSSAQAAQQAA 200 Query: 162 ELSETFLSQSGRNQYANSSSK-KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 +++ + + G ++ V+N+L + QV L+V +AEV + ++ Q+G +I Sbjct: 201 AIAKAYANAGGGGANGDNKGGGTVLNMLTVTAPQQVMLEVKVAEVSKTLINQLGSAFNIQ 260 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S + ++ S V + F + A ++ LAEP L I Sbjct: 261 GGFGSWSGALVSNLLAGVASGI----VANKANNRPFSVAVDAQNTDNLVKILAEPNLVTI 316 Query: 281 SGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SGQ A+F +GG+ S+TG ++ ++GV L F PTVLS GRI L++ EVS Sbjct: 317 SGQEATFLAGGKIFIPVPQSNTGGGTTITLQEEEFGVALRFLPTVLSNGRISLKVAPEVS 376 Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E A +P R+A TTV++ G + + GL+KD+ + +P + Sbjct: 377 ELSQTGVTLTATNVAGASILPLITTRRASTTVQMADGESFAIGGLIKDNATGSLKAVPGI 436 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 +IP+LGAL R++ F ++ TE+ TP LVKP+ D+ P D ++ ++ F + Sbjct: 437 GEIPVLGALARSTSFQQDRTELIFIITPHLVKPLQTADVPLPTDSFTRTNEVDVFATGNM 496 Query: 449 NKIYGPKEASEVEGQN 464 G ++ Sbjct: 497 EGRGGLRKHGRAPASE 512 >gi|187919324|ref|YP_001888355.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] gi|187717762|gb|ACD18985.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] Length = 595 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 129/477 (27%), Positives = 221/477 (46%), Gaps = 48/477 (10%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 ++I P A + A N S + + ++I + K ++ V V+ V Sbjct: 80 LTIAASGMGPGAAS--GGAQQGARGPNCS-GPVAEHSSVTIPVGKSTMVDVREPVKSRSV 136 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 +P ++ SP+T+YL G +VG N+I+ G G + +D+ + D L+ TL + Sbjct: 137 GNPAIVQAMLVSPQTLYLLGSDVGTTNMIVQGRSGSCTI-IDVSVGADPGGLQQTLAALM 195 Query: 132 ADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR----------------- 173 + I+V+ +DT+VL G V ++R +EL+ F+++ Sbjct: 196 PEETGIQVKAAADTLVLTGTVSDAVKAERVLELARAFVARPTAALQGGAPMGSGPLPVGA 255 Query: 174 ---------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 +S ++++N++++A QV L+V +AEV + ++ Q+G +I G Sbjct: 256 APRAMGMPAPTLGGASGERIINMMHVAAPQQVMLEVKVAEVSKTLIDQLGVAANINGGIG 315 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 S AD+ +S G + + A + ++ LAEP L AISGQ Sbjct: 316 SWSFGLLADY----LSGGLSALTASKANNSPLRAAIDAQKTDQLVKILAEPNLMAISGQE 371 Query: 285 ASFTSGG--QHLYKTVSSSTGATSV-TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ASF +GG + + G T V YGV L FTPTVL GRI L++ EVSE Sbjct: 372 ASFLAGGKVYIPVPQSNGANGTTIVLQEEQYGVGLTFTPTVLEGGRINLKVSPEVSELSS 431 Query: 342 G---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 N +P R+A TT+++ G + + GLLK +I +G+P +++P Sbjct: 432 TGVVVSAGNSNNQTILPLITTRRASTTLQVFDGQSFAIGGLLKSNITGSIKGLPGAAELP 491 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 +LGALFR++ + +++TE+ TP L KP+ + P DH+ +A + + Sbjct: 492 VLGALFRSTSYEQDKTELVFVVTPRLAKPL-PQHYPLPTDHFGDASEANVYLTGHME 547 >gi|114799407|ref|YP_759869.1| type II/III secretion system protein [Hyphomonas neptunium ATCC 15444] gi|114739581|gb|ABI77706.1| type II/III secretion system protein [Hyphomonas neptunium ATCC 15444] Length = 432 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 127/433 (29%), Positives = 197/433 (45%), Gaps = 24/433 (5%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82 +A A A+ ++ + K +++ ++V+DP A+ + Sbjct: 9 IASCLAALCAQPALAWTQRSAPAGADQLELRRGKSAVVEADAAFATIVVADPEIAEAMPT 68 Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142 S R+ ++ GK G V++ G +++ ++ + L L R + I V V Sbjct: 69 SNRSFFVRGKKPGGTTVLIYDEAGAIAELIEVEVKLGLDELRGDLGRLLPGEIIDVYAVH 128 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 D V L G V T + A++L+E + V N L++ QV L+V Sbjct: 129 DGVYLDGKVTTAAAADMALQLAERHV------------PGGVANGLSVGQSQQVMLEVRF 176 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLH 261 E R +++IGF G++ + A GG +V + + + L Sbjct: 177 LEASRKAVREIGF-----GNTIDANDVVAGTEGGTVSGLLEKTLAVFTNVGGENIDVSLR 231 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 ALE IRTLAEP L A+SG +ASF +GG+ VSS +V +GV L FTPT Sbjct: 232 ALEEKGVIRTLAEPNLVALSGDTASFLAGGEFPIP-VSSRDNEVTVEFKKFGVSLDFTPT 290 Query: 322 VLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VL G + LR++ EVS G + D+P VR+ADTTVEL G +AGLL+++ Sbjct: 291 VLGDGLVNLRVRPEVSALDRGNGIRASNIDIPGVSVRRADTTVELHDGQAFAIAGLLQNN 350 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSV 436 P L +PILG+LF + R+ R ETE+ I TP LV+P + + P D S Sbjct: 351 YTNDVRQTPWLGNVPILGSLFSSKRYQRNETELVIIVTPRLVQPFSHPEAIVSPLDSVSE 410 Query: 437 EDDAKAFFFNRVN 449 +A+ F + Sbjct: 411 PTEAELFLLGKTT 423 >gi|148253058|ref|YP_001237643.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1] gi|146405231|gb|ABQ33737.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1] Length = 496 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 130/470 (27%), Positives = 219/470 (46%), Gaps = 37/470 (7%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 +T ++ L ++ S+ + I A + V + D + ++IS+ +K +++ Sbjct: 3 YTWAAVALMAATISIG-IYGIGPARSQVRVVQDDPV-PARQISVTRDKSRTIKLDKPFAS 60 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 LV P ADV+ S R +Y+ GK +G NV L D + + + + DI ++ +R Sbjct: 61 ALVGAPDIADVLPMSDRIVYIQGKKIGTTNVTLFDQDKNVIGVIGLEVTIDIQNIASKIR 120 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 IRV ++ +VL G R D+++AV ++ K V+N + Sbjct: 121 SGTNSPGIRVSSSNNQIVLSGEARDAVDAEKAVAIARGMA----TPPEGKDPEKYVINAM 176 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGG-- 243 +A QV L+V EV R ++IG + +G+ + + A G + G Sbjct: 177 RVAASQQVMLRVRFIEVSRQAEREIGVNWFGANASGTRGINTGTGAISQAGPTATSAGVP 236 Query: 244 DFSVKGVLDRFSFET------------------VLHALERATAIRTLAEPTLTAISGQSA 285 F+ G + ++ ALE+ R LAEP L A+SG +A Sbjct: 237 VFNTIGTFAGSTLSAPFGVGLFNLANKGGSVDVLITALEKKGLARRLAEPDLVALSGDTA 296 Query: 286 SFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 SF +GG++ +V SS+G T +V +GV L F PTVL+ G I LR+ VSE Sbjct: 297 SFLAGGEYPVPSVQSSSGTTPVITVLYKPFGVQLTFVPTVLASGIINLRLTPSVSELDYT 356 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + ++ +P+ R+A T +EL G + +AGLL+ D + +P L +P+LG LF Sbjct: 357 NAVAISGTLVPALSKREARTAIELRDGQSFAIAGLLQSDNLRDVGQLPWLGSVPVLGTLF 416 Query: 399 RNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNR 447 R++ + ++ET++ + TP LV P A + L+ P D +D F R Sbjct: 417 RSTSYQQKETDLVVIVTPHLVAPAAPGQALATPFDKQLPGNDVDLFLMGR 466 >gi|87199534|ref|YP_496791.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87135215|gb|ABD25957.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 517 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 128/440 (29%), Positives = 204/440 (46%), Gaps = 52/440 (11%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + +NK ++ + LV + ADV+ + R++Y+ GK +G ++ L G Sbjct: 38 AGTLEVPVNKSQVVSTDRTIAKALVGNDDIADVLPVTTRSIYVLGKKMGTTSLTLYDATG 97 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + +D+ + D+ L L+ F+ + I + +D +VL G+V RAV+L+ T Sbjct: 98 RVLSIMDVAVGPDVEGLRSQLKTFVPNDKIDARLSNDAIVLSGLVNDPGAIDRAVQLART 157 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----------- 215 + KV+NL+++ QV L+V AEV R +G Sbjct: 158 YAG------------DKVVNLISLGSSQQVMLEVKFAEVNRTAGFDVGVSGFASKGTFES 205 Query: 216 ------------QHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGVLDRFSFET 258 +++G+S G S S G F +D + Sbjct: 206 AIGKGAQLVPGADVTVSGNSGGVSTSTTIPGASILKLSSITGSFGIFRKSFSIDGLGIDA 265 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------STGATSVTTH 310 VL+ALE +TLA+PTL A+SG+ ASF +GG+ V S + GA +V Sbjct: 266 VLNALETKGMAKTLAQPTLLALSGERASFLAGGEFPVPVVQSGTTGTGNGNGGAITVEFK 325 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGG 366 +GV L FTPTVL I L ++ EVS + V + +P R R+A TT+EL G Sbjct: 326 PFGVSLGFTPTVLGDKTINLLVEPEVSAIDPTASLTVGSITIPGLRTRRASTTLELRDGE 385 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + +AGLL+ D + + +PLL +PI+G+LFR+S F++ ETE+ I TP LV P+ Sbjct: 386 SFAIAGLLQKDFKTSVQQLPLLGSLPIIGSLFRSSAFSKGETELLIVVTPRLVSPIKPEQ 445 Query: 427 LSRPDDHYSVEDDAKAFFFN 446 + P D + A F Sbjct: 446 VRLPTDAVTDPSAASTIFLG 465 >gi|167574003|ref|ZP_02366877.1| type II/III secretion system protein [Burkholderia oklahomensis C6786] Length = 548 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 127/431 (29%), Positives = 218/431 (50%), Gaps = 22/431 (5%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 91 EMREATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGLSVGTTNMIVQ 150 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V Q +Q+AV Sbjct: 151 GRSGACQI-IDVAVGADAGGLQTSLRQLMPAERDIRVSTAADTIVLAGNVSDAQAAQQAV 209 Query: 162 ELSETFLSQSG----RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 +++ + ++ A V+N+L + QV L+V +AEV + ++ Q+G Sbjct: 210 AIAKAYSDRTNVGPGAGAGAGGPRGGVLNMLTVTSPQQVLLEVKVAEVSKTLINQMGSAI 269 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 +I G S+ ++ G+ ++ F+ L A ++ LAEP L Sbjct: 270 NIQ----GGFGSWTGMLVSSLLAGVGNGIAASKSNKLPFKAALDAQNTDQPVKILAEPRL 325 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 ISGQ A+F +GG+ SS T+ + ++GV L FTPTVLS GRI L++ Sbjct: 326 VTISGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVGLKFTPTVLSNGRISLKVAP 385 Query: 335 EVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 EVSE +P R+A TTV++ G T + GL+KD+ Q + Sbjct: 386 EVSELSPTGVTLSATNVSGVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLRAL 445 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P + +IP+LGALFR++ F ++ TE+ TP LVKP+ D+ P D ++ ++ + Sbjct: 446 PGIGEIPVLGALFRSTSFQQDRTELVFIITPHLVKPLETADVPLPTDSFTKPNEVDVYAT 505 Query: 446 NRVNKIYGPKE 456 + G ++ Sbjct: 506 GNMEGRGGLRK 516 >gi|167924333|ref|ZP_02511424.1| Putative phospholipid-binding domain family protein [Burkholderia pseudomallei BCC215] Length = 438 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 121/428 (28%), Positives = 217/428 (50%), Gaps = 20/428 (4%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ G Sbjct: 1 MRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQG 60 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 61 KSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVA 119 Query: 163 LSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 120 IAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GSA 175 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + G S+ ++ G ++ + A ++ LAEP L I Sbjct: 176 VNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVTI 235 Query: 281 SGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SGQ A+F +GG+ SS T ++ ++GV L FTPTVLS GRI L++ EVS Sbjct: 236 SGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEVS 295 Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E N +P R+A TTV++ G T + GL+KD+ Q + +P + Sbjct: 296 ELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPGI 355 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++P+LGALFR++ F ++ TE+ TP LV+P+ D+ P D ++ ++A + + Sbjct: 356 GELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGNM 415 Query: 449 NKIYGPKE 456 G ++ Sbjct: 416 EGRGGLRQ 423 >gi|209546483|ref|YP_002278401.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537727|gb|ACI57661.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 495 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 131/492 (26%), Positives = 221/492 (44%), Gaps = 35/492 (7%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59 M +R S+ ++ S A A V +GK +++++ N + Sbjct: 1 MANGKRRIARTKSLAALAAVFSACVCLGPGFAGCANAQEKSVTLGKSVQRVTLPPNATLT 60 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 L D+++ DVV S +++++ GK +G N+ + G D + +D+ + D Sbjct: 61 LNTGQAFGDLVIGSADMIDVVPLSDKSLFIRGKKIGATNISVYGDDKSLLGVIDVRVASD 120 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +R + + V SD + L G+VR + QR +++++++ Sbjct: 121 FSEVAAAIRSAAPSARVIVANSSDRIRLTGIVRDGVELQRVMDIAQSY------------ 168 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFG 235 S + V+N L ++ QV L+V + E R + +G S G++ S+ D Sbjct: 169 SDQPVLNQLRVSDSQQVMLEVRVIEASRQTGRDLGIGWSGRGNNGIGKATTSQGLGVDDN 228 Query: 236 GKFV--------SEGGDFSVKGVL------DRFSFETVLHALERATAIRTLAEPTLTAIS 281 G V + G ++ + V++ALE+ +R LA+P L A+S Sbjct: 229 GSLVRTLVDPKGAATGALPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMS 288 Query: 282 GQSASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 G +ASF +GG+ T + +T AT +GV L F P VL G I L I+ EVSE Sbjct: 289 GSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGLINLEIEPEVSEL 348 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +N P + R A TTV L G + LAGLL+ + + +P L KIPILGALFR Sbjct: 349 DPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQLPGLGKIPILGALFR 408 Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 ++ F ++E+++ I TP +V+P DL P D +D + F V ++ Sbjct: 409 STSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALG-VLEVDKDMLRR 467 Query: 459 EVEGQNYKGAIG 470 G+ G G Sbjct: 468 FRNGEGVTGPYG 479 >gi|296156489|ref|ZP_06839327.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] gi|295893088|gb|EFG72868.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] Length = 599 Score = 309 bits (791), Expect = 8e-82, Method: Composition-based stats. Identities = 121/475 (25%), Positives = 221/475 (46%), Gaps = 46/475 (9%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 + + +S + N + + + ++I + K ++ V V+ V + Sbjct: 84 LTIAASGMGPGAYSGGAQQGGRGPNCT-GPVAEHSSVTIPVGKSAMVDVREPVKSRTVGN 142 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 P+ ++ SP+T+YL G +VG N+I+ G G + +D+ + D L+ TL + + Sbjct: 143 PSIVQAMLVSPQTLYLLGSDVGTTNMIVQGRSGSCTI-IDVSVGADPGGLQQTLAALMPE 201 Query: 134 SN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR------------------- 173 I+V+ +DT+VL G V + R +EL+ F+++ Sbjct: 202 ETGIQVKAAADTLVLTGTVSDAVKADRVLELARAFVARPTTALQGGAPMGSGPLPVGAAP 261 Query: 174 -------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 + ++++N++++A QV L+V +AEV + ++ Q+G +I G Sbjct: 262 RAMGMPAPSLGGAGGERIINMMHVAAPQQVMLEVKVAEVSKTLIDQLGVAANINGGIGSW 321 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S AD+ +S G + + + A + ++ LAEP L AISGQ AS Sbjct: 322 SFGLLADY----LSGGLSALTASKANNSPLKAAIDAQKTDQLVKILAEPNLMAISGQEAS 377 Query: 287 FTSGGQHLYKTVSSS-TGATSV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342 F +GG+ S+ +G T++ YGV L FTPTVL GRI L++ EVSE Sbjct: 378 FLAGGKVYIPVPQSNGSGGTTIVLQEEQYGVGLTFTPTVLEGGRINLKVSPEVSELSSTG 437 Query: 343 --------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +P R+A TT+++ G + + GLLK ++ +G+P +++P+L Sbjct: 438 VVVSAGNSNTTSILPLITTRRASTTLQVFDGQSFAIGGLLKSNVTGSIKGLPGAAELPVL 497 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 GALFR++ + +++TE+ TP L KP+ + P D++ +A + + Sbjct: 498 GALFRSTSYEQDKTELVFVVTPRLAKPL-PQHYPLPTDNFGDASEANVYLTGHME 551 >gi|73542329|ref|YP_296849.1| type II and III secretion system protein:transport-associated [Ralstonia eutropha JMP134] gi|72119742|gb|AAZ62005.1| type II and III secretion system protein:Transport-associated [Ralstonia eutropha JMP134] Length = 633 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 106/422 (25%), Positives = 204/422 (48%), Gaps = 20/422 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + + + + + K ++ + V++ + +P + S +T+Y+ G+ VG N+I+ Sbjct: 87 AVRQESSVIVPVGKSQLITLQEPVKNRTLGNPNVVQATMVSAQTLYVLGRTVGTTNMIVQ 146 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +++++ D L+ +L + + IRV +D +VL G V Q + +A+ Sbjct: 147 GRSGSCSI-INVVVNADAGGLQTSLSQLLPGEPGIRVMTAADNLVLTGSVTNAQSALQAM 205 Query: 162 ELSETFLSQSG-RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 ++++ + + + V+N+L++ QV L+V +AEV + +L Q+G ++ Sbjct: 206 DIAQAYANAAQVGAGGDAGKKGGVLNMLSVDTPQQVMLEVKVAEVSKTLLNQLGSSVNLQ 265 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S+ ++ + F + A + + ++ LAEP L I Sbjct: 266 ----GGFGSWTGGLVTSLLTGASGAIFGSKANNKPFNFAIDAQKNDSLVKILAEPNLVTI 321 Query: 281 SGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 SGQ ASF +GG+ ++ G ++ ++GV L FTPTVL+ GRI L++ EV Sbjct: 322 SGQEASFLAGGKIYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANGRIHLKVAPEV 381 Query: 337 SEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE +P R+A TTV++ G + + GLL+D + + +P Sbjct: 382 SELSPTGATVSGGTLAGQSVLPLITTRRASTTVQMRDGESFAIGGLLQDSARGSLKALPG 441 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 ++P+LG LFR++++ ++ TE+ TP LVKP+A + P D ++ D +F Sbjct: 442 AGEVPVLGTLFRSTQYQQDLTELVFIITPRLVKPMATNNYPLPTDSFTTPDPFSLYFMGN 501 Query: 448 VN 449 + Sbjct: 502 ME 503 >gi|217978832|ref|YP_002362979.1| type II and III secretion system protein [Methylocella silvestris BL2] gi|217504208|gb|ACK51617.1| type II and III secretion system protein [Methylocella silvestris BL2] Length = 530 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 140/487 (28%), Positives = 220/487 (45%), Gaps = 42/487 (8%) Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84 L + A + + E + +++++ K ++ +V ADV+ S Sbjct: 43 GLAETQPAKSQAGSTIQYEPAQVRRVAVTRYKSRTFRMETPFSSAVVGSADIADVLPMSD 102 Query: 85 RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144 R +Y+ GK VG NV + D K + +D+ + DI ++ +R IRV +D Sbjct: 103 RVIYIQGKRVGTTNVSIFDKDKKLIGVIDLEVTLDIQNIAAKVRSGTDSRGIRVSSNNDQ 162 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 +VL G R D+ RAV ++++ ++ + + + K V+N +++A QV L+V E Sbjct: 163 IVLSGEARNAVDADRAVSIAKSMVTTAD-GKPPDDPGKFVINAMSVAAAQQVLLRVRFVE 221 Query: 205 VRRDILKQIGFQH-------------SITGSSSGPSKSFAADFGG-------KFVSEGGD 244 V R + IG + G +S +S GG + GG Sbjct: 222 VNRIAERDIGVNWFGAANKTQTAGVNTGNGIASQVGQSLTPTPGGIPLFQTLATLVPGGL 281 Query: 245 FSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 S + L + + ++ ALE+ R LAEP L A+SG +ASF +GG++ Sbjct: 282 ASTGSLPFGVGLIKLAGGNVDLLISALEKKGQARRLAEPDLIALSGDTASFLAGGEYPVP 341 Query: 297 TVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMP 349 +V SS+G T + + YGV L F PTVL+ G I LR+ VSE V+ +P Sbjct: 342 SVQSSSGTTPVITTQYYPYGVQLTFIPTVLANGIINLRLNPSVSELDYKNVVVTAGFAIP 401 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 S R+A TT+EL G + +AGLL+ D IP L +P+LGALF + + + ET+ Sbjct: 402 SITKREARTTIELRDGQSFAIAGLLQSDSTHDVNQIPWLGSVPVLGALFSSKSYQQNETD 461 Query: 410 IFIAATPFLVKPVAMRD-LSRPDDHYSVEDDAKAFFFNR--VNKIYGPKEASEVEGQNYK 466 + + TP LV P A ++ P D +D F R V K Y S G Sbjct: 462 LVVIVTPHLVAPAAPGQVVATPFDKTLPANDVDFFVMGRPEVRKQYTDYVTS---GGGLT 518 Query: 467 GAIGFIY 473 G G I Sbjct: 519 GPYGDIM 525 >gi|103486617|ref|YP_616178.1| type II and III secretion system protein [Sphingopyxis alaskensis RB2256] gi|98976694|gb|ABF52845.1| type II and III secretion system protein [Sphingopyxis alaskensis RB2256] Length = 493 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 137/483 (28%), Positives = 225/483 (46%), Gaps = 43/483 (8%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I L ++ A P+ A AV N S I + + + ++ +P + Sbjct: 12 LARTLAIGLVAATLIAAPSRPV--AAQAVQNASS-------SIDLSVGRGRLISLPAAMS 62 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 DV V+D ADV V S R +Y+F K G+ ++ G+ + + + +I ++ L Sbjct: 63 DVFVADDKVADVQVRSSRQLYVFAKAPGETSIYATDASGRVVFSTVARVGNNIETIDQML 122 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + +++I ++ V+L G VR+ D+ A L + F+ KV++ Sbjct: 123 SLAMPEASIAANTMNGFVLLTGTVRSPDDAAEAERLVQAFVGDQT----------KVLSR 172 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----------- 236 L A QV L+V IAEV R ++K++ + F G Sbjct: 173 LRTATPLQVNLQVRIAEVNRSLVKELSGNLLTRDTDGPLGNGFLGGVFGGRQAGTITTDA 232 Query: 237 ------KFVSEGGDFSVKGVLDRFSFE--TVLHALERATAIRTLAEPTLTAISGQSASFT 288 + G S+ G F + L ER+ + TLA+P LTAISG++A F Sbjct: 233 NGNTIYSITTPPGTRSLAGAGRLFGLDLIASLDIGERSGLVATLAQPNLTAISGETADFL 292 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVN 344 +GG+ + G T++ YGV L +TPTVLS GRI LR++ EVSE I + Sbjct: 293 AGGEFPVPIPGNFAG-TTIEYRKYGVSLAYTPTVLSNGRISLRVRPEVSELSTEGAIEMQ 351 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ +R+A+TTVEL SG + ++AGLL + + +P L +P+LG LF++ F Sbjct: 352 GFQIPALTIRRAETTVELGSGESFMIAGLLNNRSIGAIDKMPGLGDVPLLGTLFKSDSFR 411 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 R ETE+ I TP+LV+PV+ D+ P D + DD + N+ + + + + Sbjct: 412 RGETELVIVVTPYLVEPVSANDIKLPTDAFRDADDLQRLLLNQTSDGVTGGDRPKPRLDS 471 Query: 465 YKG 467 G Sbjct: 472 NVG 474 >gi|194288836|ref|YP_002004743.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG 19424] gi|193222671|emb|CAQ68674.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG 19424] Length = 621 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 109/421 (25%), Positives = 205/421 (48%), Gaps = 21/421 (4%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 I + + + K ++ + V++ + +P+ + SP+T+Y+ G+ VG N+I+ Sbjct: 86 AIRSESSVVVPVGKSQLITLQEPVRNRTLGNPSVVQATMVSPQTLYVLGRTVGTTNMIVQ 145 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +++++ D L+ +L + + IRV +D +VL G V Q +Q+A+ Sbjct: 146 GRSGSCSI-INVVVNADSGGLQTSLGQLLPGEPGIRVTTAADNLVLTGSVTNAQAAQQAM 204 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 E+++ + + + S V+N++++ QV L+V +AEV + +L Q+ Sbjct: 205 EIAQAYANAAQGGDGNKKGS--VLNMMSVDTPQQVMLEVKVAEVSKTLLNQL----GSAV 258 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + G S++ ++ + FE L A + + ++ LAEP L IS Sbjct: 259 NLQGGFGSWSGGLVTSLLTGASAAVFGSKANNRPFEFALDAQKNDSLVKILAEPNLVTIS 318 Query: 282 GQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 GQ ASF +GG+ ++ G ++ ++GV L FTPTVL+ GRI L++ EVS Sbjct: 319 GQEASFLAGGKIYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANGRIHLKVAPEVS 378 Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E +P R+A TTV++ G + + GLL D + + +P Sbjct: 379 ELSPTGATIRGGTLAGQTILPVITTRRASTTVQMRDGESFAIGGLLTDSARGSLKALPGA 438 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++P+LG LFR++++ ++ +E+ TP LVKP+ + P D +S + +F + Sbjct: 439 GEVPVLGTLFRSTQYQQDLSELVFIITPRLVKPMQTNNYPLPTDSFSAPNPLSLYFMGNM 498 Query: 449 N 449 Sbjct: 499 E 499 >gi|288956969|ref|YP_003447310.1| pilus assembly protein [Azospirillum sp. B510] gi|288909277|dbj|BAI70766.1| pilus assembly protein [Azospirillum sp. B510] Length = 491 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 119/441 (26%), Positives = 205/441 (46%), Gaps = 32/441 (7%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ + ++++ +V V+DP ADV S +++ G+ G+ V + + + Sbjct: 66 MTLDVGTSEMVRLSAPATNVYVADPEIADVQAASGTVIFVLGRKPGRTTVYALTEGDRVV 125 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 L+ DI + +A L + + V + +++ G V T ++ +EL F Sbjct: 126 LHRDIRVIHSLAPLREQITARFPGMPVTVTSAPNRLIVTGEVPTPAIAESVMELVNGFAR 185 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSG 225 KV+N + + G QVTL+V +AEV R + +++GF I + Sbjct: 186 ----------PDDKVVNQMAVTGPVQVTLRVQVAEVARSVTQELGFNWEGAVKIGDFAIA 235 Query: 226 PSKS---FAADFGGKFVSEGGDFSVKGVL----DRFSFETVLHALERATAIRTLAEPTLT 278 P A G S G S+ G+L + + ++ A++ + LA+P L Sbjct: 236 PGFGRDFLNATSGAIQRSATGASSLAGILKSSNGKANIAGIVDAMQDQGLVTLLAQPNLV 295 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 A+SG+ A F +GG+ + +G+ V YGV L+F PTVL+P RI L ++ EV Sbjct: 296 AMSGKPAMFLAGGEFPIPVSAGDSGSNKIQVEFKQYGVALNFVPTVLAPDRIALTVRPEV 355 Query: 337 SEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 SE + VN +P+ VR+ +T+VEL SG + + GLL++ + + P L +P Sbjct: 356 SELTDVGAVTVNGLTIPALTVRRVETSVELGSGESFAIGGLLQNSNRSSLKKFPGLGDLP 415 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +LG LFR+ RF ETE+ + TP++V P+ P + + R + Sbjct: 416 VLGELFRSRRFINNETELVVIVTPYVVNPIQRGPGVIPQRGTKPNREVEELLRRRQQALG 475 Query: 453 GPKEASEVEGQNYKGAIGFIY 473 P+ A +Y G GFIY Sbjct: 476 LPEPAG-----SYYGPAGFIY 491 >gi|86360580|ref|YP_472468.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42] gi|86284682|gb|ABC93741.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42] Length = 495 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 129/492 (26%), Positives = 221/492 (44%), Gaps = 35/492 (7%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59 M +R S+ ++ S A +A + +G+ + +++ N+ + Sbjct: 1 MANGRRRIARTKSLAALAAVFSACVCLGPGFAGSASAQEKSITLGESVQHVTLPPNETLT 60 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 L D+++ DVV S +++++ GK G N+ + G D + +DI + D Sbjct: 61 LNTGQPFGDLVIGSADMIDVVPLSDKSLFIRGKKTGATNISVYGDDKSLLGVIDIRVASD 120 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +R + +RV +D + L G VR + QR +E+++++ Sbjct: 121 FSEVASAIRSAAPSARVRVINSNDRIRLTGFVRDGIELQRVMEIAQSY------------ 168 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-----SGPSKSFAADF 234 S + V+N L ++ QV L+V + E R + +G S G++ + S+ A D Sbjct: 169 SDQPVLNQLRVSDSQQVMLEVRVIEASRQTGRDLGIGWSGYGNNNRIGKATTSQGIAVDD 228 Query: 235 GGKF-------VSEGGDFSVKGVL------DRFSFETVLHALERATAIRTLAEPTLTAIS 281 G + G ++ + V++ALE+ +R LA+P L A+S Sbjct: 229 GSLARTLLDPKGAATGALPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMS 288 Query: 282 GQSASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 G +ASF +GG+ T + +T AT +GV L F P VL G I L I+ EVSE Sbjct: 289 GSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGLINLEIEPEVSEI 348 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +N P + R A TTV L G + LAGLL+ + + +P L +IP+LGALFR Sbjct: 349 DPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQLPGLGQIPVLGALFR 408 Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 ++ F ++E+++ I TP +V+P DL P D +D + F V ++ Sbjct: 409 STSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALG-VLEVDKDMLRR 467 Query: 459 EVEGQNYKGAIG 470 G G G Sbjct: 468 FRNGVGVTGPYG 479 >gi|27378611|ref|NP_770140.1| hypothetical protein blr3500 [Bradyrhizobium japonicum USDA 110] gi|27351759|dbj|BAC48765.1| blr3500 [Bradyrhizobium japonicum USDA 110] Length = 550 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 133/534 (24%), Positives = 219/534 (41%), Gaps = 73/534 (13%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISD-----VEIGKGKKISIGLNK 56 R +T +++ + +VA P A AA S E+ +++ + +NK Sbjct: 5 RVSGKTVARLLAFGVMGLGAAVALCGPADRAEAADRRGSSGGVFVSEMNDVQRVRVVVNK 64 Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 +V ++ P DV S +Y+ GK G NVIL KQ+ LD+ + Sbjct: 65 SRTFKVDTAFATIIAGSPDIVDVKSLSDHMIYVQGKQTGTTNVILFDSAMKQIGVLDVEV 124 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 D +L+ +R +RV VVL G ++RA+ ++ + +++ G Sbjct: 125 VIDTGNLQQNIRTGTGMQGVRVSASEGQVVLSGTAVDAVAAERAMAIATSTVAKGGT--- 181 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------------- 220 V+N +++A QV L+V EV R+ + +G S Sbjct: 182 -------VVNAMSVAAPQQVMLEVRFLEVSREAGRNLGVNLSAANANGTNIGNSGLGRVT 234 Query: 221 -------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---------------------- 251 G + + A G + G V G L Sbjct: 235 AAGRTPIGGINTANGPLGAGGGPVGSAPTGSLPVLGTLGTLAGTAGGIAPAPFGTLLTSL 294 Query: 252 ----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---A 304 + S + ++ ALE R LAEP LT +SG +A F +GG+ + +T Sbjct: 295 IRTSNGGSVDMLISALETKGLARRLAEPNLTTLSGDAARFLAGGEFPVPIPTQTTNGFPT 354 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360 ++ +GV L F PTVLS G I LR++ VSE + + +P+ R A TTV Sbjct: 355 ITIEYKKFGVELAFVPTVLSRGVINLRVEPSVSELDFANAVTIQGTTVPALTRRDARTTV 414 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL G + +AGLL+ +Q +P + +P++G LF + + +EET++ I TP LV Sbjct: 415 ELRDGQSFAIAGLLQTRNRQDVSQLPWIGSVPVIGTLFSSKSYQQEETDLVIIVTPRLVA 474 Query: 421 PVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 P A + L+ P D +D F ++ ++ + G + KG G I Sbjct: 475 PAAPGQQLASPLDSRLPANDVDFFLNGQM-EVRKRYDDYVNSGGDVKGPYGHII 527 >gi|186474103|ref|YP_001861445.1| type II and III secretion system protein [Burkholderia phymatum STM815] gi|184196435|gb|ACC74399.1| type II and III secretion system protein [Burkholderia phymatum STM815] Length = 700 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 125/460 (27%), Positives = 220/460 (47%), Gaps = 47/460 (10%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 I + ++I + K ++ V V+ V +P+ ++ SP+T+YL G +VG N+I+ Sbjct: 111 AIADHQTVTIPIGKSTMVNVRESVKTRTVGNPSIVQAMLVSPQTLYLLGTDVGTTNMIVQ 170 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G +D+ + D L+ TL + + + ++V+ +DT+VL G V ++R V Sbjct: 171 GRSGSC-TVIDVAVGADPGGLQQTLAVLMPEESGVQVKAAADTLVLTGTVSDSVKAERIV 229 Query: 162 ELSETFLSQSG--------------------------RNQYANSSSKKVMNLLNIAGEDQ 195 EL+ ++++ N ++++++N++++A Q Sbjct: 230 ELARAYVARQAAPVPVAAPANAGGAQGGAMIPAVLKPAGASGNGNNERIVNMMHVAAPQQ 289 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V L+V +AEV + ++ Q+ + + G + S++ F+S G + + Sbjct: 290 VMLEVKVAEVSKTLIDQL----GMAANIQGGTGSWSFGLLADFLSGGMGALLGSKANNKP 345 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDY 312 + A + ++ LAEPTL AISGQ ASF +GG+ S+ A S + Sbjct: 346 LNFAIDAQKTDQLVKVLAEPTLMAISGQEASFLAGGRVFIPVPQSNGAAGSTIILQEETF 405 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVELP 363 GV L FTPTVL GRI L++ EVSE +P R+A TT+++ Sbjct: 406 GVGLTFTPTVLDNGRINLKVSPEVSELSPTGVAVTAGTVSTTAVLPLITTRRASTTLQVY 465 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G + + GL+K ++ +G+P L ++P+LGALFR++ F ++TE+ TP L KP+ Sbjct: 466 DGQSFAIGGLMKSNVTGTLKGLPGLGEVPVLGALFRSTNFQEDKTELVFVVTPRLAKPL- 524 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVN--KIYGPKEASEVE 461 ++ P DH+ +A FF + K P EA Sbjct: 525 PQNYPLPTDHFGKVTEAGVFFTGNMEGKKPQAPAEAVPPS 564 >gi|167566934|ref|ZP_02359850.1| outer membrane protein [Burkholderia oklahomensis EO147] Length = 550 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 127/431 (29%), Positives = 218/431 (50%), Gaps = 22/431 (5%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 93 EMREATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGLSVGTTNMIVQ 152 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V Q +Q+AV Sbjct: 153 GRSGACQI-IDVAVGADAGGLQTSLRQLMPAERDIRVSTAADTIVLAGNVSDAQAAQQAV 211 Query: 162 ELSETFLSQSG----RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 +++ + ++ A V+N+L + QV L+V +AEV + ++ Q+G Sbjct: 212 AIAKAYSDRTNVGPGAGAGAGGPRGGVLNMLTVTSPQQVLLEVKVAEVSKTLINQMGSAI 271 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 +I G S+ ++ G+ ++ F+ L A ++ LAEP L Sbjct: 272 NIQ----GGFGSWTGMLVSSLLAGVGNGIAASKSNKLPFKAALDAQNTDQPVKILAEPRL 327 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 ISGQ A+F +GG+ SS T+ + ++GV L FTPTVLS GRI L++ Sbjct: 328 VTISGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVGLKFTPTVLSNGRISLKVAP 387 Query: 335 EVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 EVSE +P R+A TTV++ G T + GL+KD+ Q + Sbjct: 388 EVSELSPTGVTLSATNVSGVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLRAL 447 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 P + +IP+LGALFR++ F ++ TE+ TP LVKP+ D+ P D ++ ++ + Sbjct: 448 PGIGEIPVLGALFRSTSFQQDRTELVFIITPHLVKPLETADVPLPTDSFTKPNEVDVYAT 507 Query: 446 NRVNKIYGPKE 456 + G ++ Sbjct: 508 GNMEGRGGLRK 518 >gi|258405291|ref|YP_003198033.1| type II and III secretion system protein [Desulfohalobium retbaense DSM 5692] gi|257797518|gb|ACV68455.1| type II and III secretion system protein [Desulfohalobium retbaense DSM 5692] Length = 455 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 119/444 (26%), Positives = 205/444 (46%), Gaps = 20/444 (4%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 R+ + +I + + P + + + + + + + K ++L+ + Sbjct: 8 RSGLLIAAIMVLTFCVWSIPQEPQAQEFRIIPTKNSADDSIMRSLELTYGKSVVLKSNRE 67 Query: 66 VQDVLVSDPTKA-DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 + V DP D ++ P +YL G AN+IL + +I ++ D++ L+ Sbjct: 68 ITRVSEPDPNVLKDPLLIGPNELYLTPAGAGTANLILW-QGKEVSTVYEITVKHDLSRLK 126 Query: 125 MTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 L + N +RV ++++ L G V + + + L+ET+ + G Sbjct: 127 QRLHELFPEENELRVLSTNESITLSGQVSSASALDQIMALAETYAPEGG----------- 175 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 + N + + G QV L+V +AEV R L ++G + ++ S F S G Sbjct: 176 IKNQVTVKGIHQVMLEVKVAEVSRQSLDRLGINFDLINDAAEFSIGFLGAAS-AGSSGSG 234 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F+ D F + L+R + LAEP+L ++SGQ++SF +GG+ V S G Sbjct: 235 SFNFWRNGDNVDFNGLFDFLKREGLAKILAEPSLISMSGQTSSFLAGGEIPIPDV-DSDG 293 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTT 359 V YG+ L FTPTV+S RI +++ VSE +N +P +VR+A+TT Sbjct: 294 NIGVEFKSYGIELAFTPTVMSKERIAIKVVPVVSELDEASGTVINGAQVPGLKVRRANTT 353 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VEL G + +AGLL ++ ++ P L +P+LG LF + F +ETE+ I TP LV Sbjct: 354 VELGDGQSFAIAGLLSENSEETVSKFPGLGDLPVLGPLFTSKSFTSDETELVIMVTPKLV 413 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAF 443 P+ S P D + DA+ + Sbjct: 414 TPLVAEKQSLPTDFFIHPTDAEFY 437 >gi|296284552|ref|ZP_06862550.1| type II and III secretion system protein [Citromicrobium bathyomarinum JL354] Length = 502 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 136/482 (28%), Positives = 219/482 (45%), Gaps = 48/482 (9%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 M + ++ +P + +A + V D I + + K ++ VP + DV + Sbjct: 1 MLLGAALCAAPLSIVPTMADAQSVVRPTQD--------IVLSIGKGELINVPGSMADVFI 52 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 ++ + AD+ V S R +YLFGK+ G+ V G + ++ + +I L+ L + Sbjct: 53 ANDSIADIQVKSQRQLYLFGKSGGETTVYASNAAGDVIWAANVRVGSNIGSLDQMLALAM 112 Query: 132 ADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + I V + +TV+L G V +D+ A L FL V+ L Sbjct: 113 PQAKISVATMGSNTVLLTGTVANPEDAAEAERLVSAFLGDET----------NVIARLTT 162 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231 A QV L+V AEV R +++ IG + +++G Sbjct: 163 ATPLQVNLQVRFAEVSRSLVRAIGANLLSSDATNGFQFGVTRGRNFAPQYTPGGPVGVGV 222 Query: 232 ---ADFGGKFVSEGGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSAS 286 +D G ++ G+ F L E + TL++P LTA+SG++A Sbjct: 223 TGGSDGSTVITGNGTGATIAGLGSLFGMDLAAALDLAETNGLVSTLSQPNLTALSGETAD 282 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IG 342 F +GG+ +S GATSV +YGV L +TPTVL+ GRI +R+ EVSE + Sbjct: 283 FLAGGEFPIP-ISQGLGATSVEYRNYGVKLTYTPTVLANGRISIRVSPEVSELSSQGAVS 341 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++ +P+ R+A TTVEL SG + ++AGL+ ++ Q + P L +PILG LFR++ Sbjct: 342 LDGVQIPALITRRASTTVELGSGQSFMIAGLMTNNSQSTIDKAPGLGDVPILGNLFRSNS 401 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 F + ETE+ I TP+LVKPV D+ P D Y+ D F G + Sbjct: 402 FRKGETELVIVITPYLVKPVDGNDIRLPTDGYNSPDTLSQLGFKETVPQGGVPDRPGPTT 461 Query: 463 QN 464 + Sbjct: 462 SD 463 >gi|327189767|gb|EGE56911.1| cpaC pilus assembly Q protein [Rhizobium etli CNPAF512] Length = 495 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 129/492 (26%), Positives = 221/492 (44%), Gaps = 35/492 (7%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59 M +R S+ ++ S + A A V +GK + +++ N+ + Sbjct: 1 MANGKRRSARTKSLAALAATFSACVILGPGFAGYASAQEKSVTLGKSVQHVTLPPNETLT 60 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 L D+++ DVV S +++++ GK G N+ + G D + +DI + D Sbjct: 61 LNTGQPFGDLVIGSADMIDVVPLSDKSLFVRGKKTGATNISVYGDDKSLLGVIDIRVASD 120 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +R + +RV +D + L G+VR + QR +E+++++ Sbjct: 121 FSEVSAAIRSAAPTARVRVFNSNDRIRLVGVVRDSIELQRVLEIAQSY------------ 168 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------- 232 S + V+N L ++ QV L+V I E R + +G S G+++ K+ + Sbjct: 169 SEQPVLNQLRVSDSQQVMLEVRIIEASRQTGRDLGIGWSGYGNNNRIGKATTSQGITVDD 228 Query: 233 -----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + G + + + V++ALE+ +R LA+P L A+S Sbjct: 229 GNLARTLLDPKGAATGMLPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMS 288 Query: 282 GQSASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 G +ASF +GG+ T + +T AT +GV L F P VL G I L I+ EVSE Sbjct: 289 GSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGVINLEIEPEVSEL 348 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +N P + R A TTV L G + LAGLL+ + + +P L +IP+LGALFR Sbjct: 349 DPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQMPGLGQIPVLGALFR 408 Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 ++ F ++E+++ I TP +V+P DL P D +D + F V ++ Sbjct: 409 STSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALG-VMEVDKDMLRR 467 Query: 459 EVEGQNYKGAIG 470 G+ G G Sbjct: 468 FRNGEGVTGPYG 479 >gi|149186255|ref|ZP_01864569.1| type II secretion system protein [Erythrobacter sp. SD-21] gi|148830286|gb|EDL48723.1| type II secretion system protein [Erythrobacter sp. SD-21] Length = 522 Score = 305 bits (782), Expect = 9e-81, Method: Composition-based stats. Identities = 129/444 (29%), Positives = 211/444 (47%), Gaps = 51/444 (11%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 ++I + + + ++ VP ++ DV +S+ ADV V S R +YLFGK+ G+ V Sbjct: 33 TSPSQEIVLSIGRGELVNVPGNMADVFISNENVADVQVKSRRQLYLFGKSGGETTVYASN 92 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD-TVVLHGMVRTIQDSQRAVE 162 G + ++ + +I ++ L + ++ I V + + TV+L G V +D+ A Sbjct: 93 AAGDIIWAANVRVGSNIGSIDQMLSLAMPEAKINVATMGNNTVLLTGTVAAPEDAADAQS 152 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 L + ++ + V++ L +A QV L+V IAEV R +++ IG + S Sbjct: 153 LVQAYVGEGT----------NVISRLRMATPLQVNLQVRIAEVSRSVVRAIGVNLATVDS 202 Query: 223 SSGPSKSFAADFGGKF-----------------------------------VSEGGDFSV 247 SSG G ++ G Sbjct: 203 SSGFQFGVGQGRGAVSQFQPSFVNPVTGERIQGPLAVGQEFEGEGATIIDQITPGSTLGA 262 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 G L L E + TL++P LTA+SG++A F +GG+ +S G T++ Sbjct: 263 FGNLLGLDIGAALDLAETQGLVTTLSQPNLTALSGETAEFLAGGEFPIP-LSQGLGTTTI 321 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELP 363 +YGV L +TPTVL+ GRI +R++ EVSE I +N +P+ R+A+TTVEL Sbjct: 322 EYKNYGVSLAYTPTVLANGRISIRVRPEVSELSSQGSITLNGFQVPALITRRAETTVELG 381 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SG + ++AGLL ++ Q E P L +P++G LFR++ + + ETE+ I TP+LVKPV Sbjct: 382 SGQSFMIAGLLSNNSQNSIEKAPGLGDVPVIGNLFRSTTYRKGETELVIVVTPYLVKPVN 441 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNR 447 D+ P D Y + + R Sbjct: 442 ANDIRLPTDGYLKPTEMQRLIALR 465 >gi|207744158|ref|YP_002260550.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum IPO1609] gi|206595562|emb|CAQ62489.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum IPO1609] Length = 626 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 120/464 (25%), Positives = 221/464 (47%), Gaps = 43/464 (9%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81 S A +E+ A N + + + ++++ + K ++Q+P V++ V +P ++ Sbjct: 73 SAATAEASRESAAKGPNCT-GAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAML 131 Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEM 140 SP+T+YL G+ VG N+I+ G G + +D+ + D L+ TLR + + N++V Sbjct: 132 VSPQTLYLLGQEVGTTNMIVQGRSGSCSV-IDVSVGADPGGLQSTLRTLMPGAKNVQVSA 190 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYAN 178 +D++VL G V +Q+ ++++ F+ G A Sbjct: 191 AADSLVLGGSVSDSVQAQKVLDIANAFVMHQTRGPAQGDQGGAAQGGGAMQGLGATPGAP 250 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S +++N++ + QV L+V +AEV + ++ Q+G ++ G S+ F Sbjct: 251 PRSPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNVN----GAFGSWTFGALANF 306 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 +S D + + L A + ++ LAEP+L AISGQ ASF +GG+ Sbjct: 307 LSGSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVS 366 Query: 299 SS--STGATSV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNA 345 + G ++ +GV L FTPTV+ GRI L++ EVSE N Sbjct: 367 QGAATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNT 426 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P R+A TT+++ G + + GL+K+++ + IP + ++P++GAL R++ F + Sbjct: 427 SILPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQ 486 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++TE+ TP LVKP+ P D + + A+ F + Sbjct: 487 DQTELVFVVTPHLVKPL-PAQYPLPTDSFGRANPAEIFLNGNME 529 >gi|323700359|ref|ZP_08112271.1| type II and III secretion system protein [Desulfovibrio sp. ND132] gi|323460291|gb|EGB16156.1| type II and III secretion system protein [Desulfovibrio desulfuricans ND132] Length = 476 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 115/424 (27%), Positives = 203/424 (47%), Gaps = 25/424 (5%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A V V+ K IS+ + + ++ +V + + T +VV SP +YL Sbjct: 23 ATVAWARVVKSDKPDMISMIIGESTVITTDQNVSRITLGSDTVCSIVVISPTQIYLTANE 82 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVR 152 +G + L D + DI ++ D L+ + + N +RV +++ L G V Sbjct: 83 IGSTTLTLWTGD-RVSEIYDIAVDPDTTRLKRMIYELLPQENNVRVLTSGNSITLSGQVS 141 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + L+E ++ +V+NLL++ G QV L+V +AE+ R + K+ Sbjct: 142 NATSLSSVLSLAEA------------AAPGRVVNLLSVDGIQQVMLEVRVAEMSRSVTKR 189 Query: 213 IGFQHSITGSSS------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 +G + GS+ S+ + +++ + + V + ++ AL+ Sbjct: 190 LGLNFAAIGSNFSIYSIINNLTSYNNEDNVFELTDNINLAGSYVSGNTTIHGMVDALKSN 249 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +R LAEP LT +SG++A F GG+ + S+ G + +G+ L FT TV+S G Sbjct: 250 GLVRMLAEPNLTCVSGEAAEFLVGGEVPIP-MPSALGTVGIDYKPFGIALKFTATVMSSG 308 Query: 327 RIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 RI L++ EVSE + V+ ++P+ R+A+T VEL G + V+AGL+ D +++ Sbjct: 309 RINLQVNPEVSELDYSKALSVSGYEIPTISTRRANTVVELGDGQSFVIAGLISDSLKENA 368 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 P L ++P+LG+LF + FN +TE+ + T L KPV M + P D + DD + Sbjct: 369 HKFPGLGEVPVLGSLFSSKDFNSNKTELVVLVTAHLAKPVDMATQTLPTDGFREPDDREF 428 Query: 443 FFFN 446 + F Sbjct: 429 YLFG 432 >gi|328952514|ref|YP_004369848.1| type II and III secretion system protein [Desulfobacca acetoxidans DSM 11109] gi|328452838|gb|AEB08667.1| type II and III secretion system protein [Desulfobacca acetoxidans DSM 11109] Length = 536 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 122/509 (23%), Positives = 209/509 (41%), Gaps = 67/509 (13%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 YL R ++ FL +S +V A K +I I + + + Sbjct: 53 YLSRWLSIVLLFFLLTSGRAVLAENESDFA------------SKAGRIVIAPHMSFVKRT 100 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGK-NVGQANVILIGHDGKQMLNLDILIERD-- 119 + V++++P+ AD + +P +++ GK G ++ L D +I++ D Sbjct: 101 QRPITRVVLANPSLADAELLTPTQLFIVGKVKQGVTSLTLWHGDNYA-ETYEIVVSFDDK 159 Query: 120 -IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 ++ +RR + + ++VE + + V+L G V + D + ++++ F + Sbjct: 160 VWNDVQAAIRRLVPRARVKVERLPEGVMLDGAVESQGDLDKVDKIAKFFFGECT------ 213 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------SITGSSS 224 N++ + G QV L+V +AEV R +KQ+G + G+ + Sbjct: 214 -------NMITVMGSQQVQLEVKVAEVSRSGIKQLGLGFLLDKDYKVAVFPSGTAAGAMA 266 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRF--------------SFETVLHALERATAIR 270 G + + G ++ + L ++ L+ R Sbjct: 267 GDRTTVSQWPTGSSDTKTSSLASVAALASPYSSAFQALVHGLNDDILGIVSLLQGQGLTR 326 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LA PTL +SGQ A F GG+ Y+TV STG +GV+L FTP VL I + Sbjct: 327 LLASPTLVTMSGQEAHFLVGGEIPYQTV-GSTGTPGTDFKKFGVMLKFTPYVLGDETITI 385 Query: 331 RIQTEVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + EVS P + +P R +T++L G +AGLL+DD + + I Sbjct: 386 SVDPEVSAPDYTLGTTTSSGTTVPGLITRTGHSTLQLKDGQVFAMAGLLRDDFRSTVKKI 445 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHY-SVEDDAKAF 443 P L +PILG LF + F R ETE+ I P +V+ + +++ P + D F Sbjct: 446 PFLGNLPILGTLFTSKEFQRSETELMIIVKPKIVRALNPQEVPALPGSNMERDVSDLDFF 505 Query: 444 FFNRVNKIYGPKEASEVE-GQNYKGAIGF 471 NR G A ++ G IGF Sbjct: 506 ILNRGWPKTGASSAPPPAKAPSFVGEIGF 534 >gi|207728106|ref|YP_002256500.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum MolK2] gi|206591351|emb|CAQ56963.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum MolK2] Length = 626 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 120/464 (25%), Positives = 222/464 (47%), Gaps = 43/464 (9%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81 S A +E+ A N + + + ++++ + K ++Q+P V++ V +P ++ Sbjct: 73 SPATAEASRESAAKGPNCT-GAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAML 131 Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEM 140 SP+T+YL G+ VG N+I+ G G + +D+ + D L+ TLR + + N++V Sbjct: 132 VSPQTLYLLGQEVGTTNMIVQGRSGSCSV-IDVSVGADPGGLQSTLRTLMPGAKNVQVSA 190 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQS----------------------GRNQYAN 178 +D++VL G V +Q+ ++++ F+ + G A Sbjct: 191 AADSLVLGGSVSDSVQAQKVLDIANAFVMRQTRGPAQGDQGGAAQGGGAMQGLGATPGAP 250 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S +++N++ + QV L+V +AEV + ++ Q+G ++ G S+ F Sbjct: 251 PRSPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNVN----GAFGSWTFGALANF 306 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 +S D + + L A + ++ LAEP+L AISGQ ASF +GG+ Sbjct: 307 LSGSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVS 366 Query: 299 SS--STGATSV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNA 345 + G ++ +GV L FTPTV+ GRI L++ EVSE N Sbjct: 367 QGAATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNT 426 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P R+A TT+++ G + + GL+K+++ + IP + ++P++GAL R++ F + Sbjct: 427 SILPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQ 486 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++TE+ TP LVKP+ P D + + A+ F + Sbjct: 487 DQTELVFVVTPHLVKPL-PAQYPLPTDSFGRANPAEIFLNGNME 529 >gi|300704930|ref|YP_003746533.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957] gi|299072594|emb|CBJ43944.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957] Length = 622 Score = 303 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 120/464 (25%), Positives = 222/464 (47%), Gaps = 43/464 (9%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81 S A +E+ A N + + + ++++ + K ++Q+P V++ V +P ++ Sbjct: 73 SAATAEASRESAAKGPNCT-GAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAML 131 Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEM 140 SP+T+YL G+ VG N+I+ G G + +D+ + D L+ TLR + + N++V Sbjct: 132 VSPQTLYLLGQEVGTTNMIVQGRSGSCSV-IDVSVGADPGGLQSTLRTLVPGAKNVQVSA 190 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQS----------------------GRNQYAN 178 +D++VL G V +Q+ ++++ F+ + G A Sbjct: 191 AADSLVLSGSVSDSVQAQKVLDIANAFVMRQTRGPAQGDQGGAAQGGGAMQGLGATPGAP 250 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S +++N++ + QV L+V +AEV + ++ Q+G ++ G S+ F Sbjct: 251 PRSPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNVN----GAFGSWTFGALANF 306 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 +S D + + L A + ++ LAEP+L AISGQ ASF +GG+ Sbjct: 307 LSGSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVA 366 Query: 299 SS--STGATSV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNA 345 + G ++ +GV L FTPTV+ GRI L++ EVSE N Sbjct: 367 QGAATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNT 426 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P R+A TT+++ G + + GL+K+++ + IP + ++P++GAL R++ F + Sbjct: 427 SILPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQ 486 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++TE+ TP LVKP+ P D + + A+ F + Sbjct: 487 DQTELVFVVTPRLVKPL-PAQYPLPTDSFGQANPAEIFLNGNME 529 >gi|153006805|ref|YP_001381130.1| type II and III secretion system protein [Anaeromyxobacter sp. Fw109-5] gi|152030378|gb|ABS28146.1| type II and III secretion system protein [Anaeromyxobacter sp. Fw109-5] Length = 490 Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 131/501 (26%), Positives = 229/501 (45%), Gaps = 59/501 (11%) Query: 10 TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69 ++ L ++ P+VA+ ++A A D E+G +++S+ + +L + + + Sbjct: 8 ALLVTLLVAAGPAVAQ----EQAQATPALRIDREMGAAREMSLEAGQNRLLIISEQIARI 63 Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 V++P AD+ V +P + L K VG ++ L D + ++ + + + R++ L +++ Sbjct: 64 AVANPDVADLKVVTPTQVLLTAKGVGTTDLTLWNRDNQPLV-IALQVGRNLEALRTQVKQ 122 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 N+++ D VVL G V ++ +R E++ +KV NL+ Sbjct: 123 LFPGENVKITASGDLVVLSGEVTDVRLPERVAEVARLHA-------------EKVANLIQ 169 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSV 247 ++G QV L+V AEV R L+++G ++ G+F++ + S+ Sbjct: 170 VSGVQQVQLQVRFAEVARGGLRELGVNLFHKSDDFRTVGGLFSNRTLPGEFLNTNQNPSI 229 Query: 248 KGV-----------------------------LDRFSFETVLHALERATAIRTLAEPTLT 278 G +D F F +L LE+ ++LAEPTL Sbjct: 230 PGTGPRGLAGNGFPPDVPAPAFQNAFSVFLSRMDDFPFSVMLSLLEQNNLAKSLAEPTLV 289 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A+SGQ A F +GG+ SS G TSV +G+ L FTPTV+ I L ++TEVS+ Sbjct: 290 ALSGQGARFLAGGELPIPLASS-FGQTSVEWKRFGIQLEFTPTVIGD-AIHLTMKTEVSD 347 Query: 339 P----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + + +P R+++T++ L G + +AGL+ D I+ +P + IPIL Sbjct: 348 IDPSLAVTIAGTSVPGLTSRQSETSIRLADGQSFAIAGLVSDRIRSQVAKVPFIGSIPIL 407 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFNRVNKIY 452 GALFR+ F R+E+E+ + T LVKPVA +L P + + D + K Sbjct: 408 GALFRSQAFQRDESELIVVVTAHLVKPVAPHELPPLPTEYEMNDPGDLPFYLLGSQGKSA 467 Query: 453 GPKEASEVEG--QNYKGAIGF 471 E + + G GF Sbjct: 468 QIAEKRQPASPERGPSGQSGF 488 >gi|17545374|ref|NP_518776.1| outer membrane channel protein [Ralstonia solanacearum GMI1000] gi|17427666|emb|CAD14185.1| probable pilus assembly protein, secretin cpac [Ralstonia solanacearum GMI1000] Length = 634 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 115/459 (25%), Positives = 217/459 (47%), Gaps = 48/459 (10%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++++ + K ++Q+ V+ V +P ++ SP+T+YL G++VG N+I+ G G Sbjct: 97 EVTVPVGKSTMVQLTEPVRSRTVGNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSC 156 Query: 109 MLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +D+ + D L+ TL + + S +RV +D++VL G V +Q+ ++++ F Sbjct: 157 SV-IDVSVGADPGGLQATLHALMPEASRVRVSAAADSLVLGGTVSDSVQAQKIIDIANAF 215 Query: 168 LSQSGRNQYANS-----------------------------SSKKVMNLLNIAGEDQVTL 198 + + R + + +++N++++ QV L Sbjct: 216 VMRETRGPAQSGQTGTMGMQGMTAMSTGNAATASSGSGEAVRNPRIINMMSVEAPQQVML 275 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 +V +AEV + ++ Q+G ++ GS S+ F+S D ++ F+ Sbjct: 276 EVKVAEVSKTLINQMGAALNLNGSFG----SWTFGALANFLSGAPDIFSADKANKLPFQL 331 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-STGATSV--TTHDYGVV 315 + A + ++ LAEP L AISGQ ASF +GG+ S TG T++ +GV Sbjct: 332 RVDAQKGDGLVKVLAEPNLMAISGQEASFLAGGKVYIPVPQSFGTGTTTILLQEETFGVG 391 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGG 366 L FTPTVL GRI L++ EVSE +P R+A TT+++ G Sbjct: 392 LRFTPTVLENGRINLKVAPEVSELSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHDGQ 451 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + GL+K ++ + IP + ++P++GAL R++ F +++TE+ TP LVKP+ + Sbjct: 452 SFAIGGLIKSNVTGSLKAIPGVGELPVIGALARSTSFQQDQTELLFVVTPHLVKPL-PAN 510 Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 P D + + + + + + A ++ Sbjct: 511 YPMPTDSFGPVNQGEVYLNGNMEGHPASRPAPAPTQGSF 549 >gi|237800794|ref|ZP_04589255.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023652|gb|EGI03709.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] Length = 432 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 126/410 (30%), Positives = 201/410 (49%), Gaps = 18/410 (4%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 + G I + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++ Sbjct: 21 QTIAKGAEGTIDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKTAGQTSL 80 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I + +G++ L + + A + L+ S R+ + V+ G V+ + ++ Sbjct: 81 IALDSEGRETAALSLAVSSGTAAVTRPLKALHPQSRARISASGNRVIASGSVQDVGEATD 140 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 L LS G+N ++ +N AG QV ++V AEV R L + G + Sbjct: 141 LNAL----LSSEGQNFQSS------VNSATYAGAAQVNIRVRFAEVSRSELLRYGVNWNA 190 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKG---VLDRFSFETVLHALERATAIRTLAEPT 276 ++ S + G +V + + +L AL+ + LAEP Sbjct: 191 LFNNGTFSFGLLTGGSLAADAASGASNVISAGLTSGNVNIDAMLEALQSNGVLEVLAEPN 250 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 +TA++GQ+ASF +GG+ V + + YGV L F+PT+L GRI L+++ EV Sbjct: 251 ITAMTGQTASFLAGGEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEV 309 Query: 337 S----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 S + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +P Sbjct: 310 SSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMP 369 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 ILG LFR+ RF R ETE+ I TP+LV+PV R + P D A A Sbjct: 370 ILGNLFRSKRFQRNETELVILITPYLVEPVKERVAATPLDKQRATSTASA 419 >gi|13475294|ref|NP_106858.1| type II secretion system protein [Mesorhizobium loti MAFF303099] gi|14026045|dbj|BAB52644.1| type II secretion system protein [Mesorhizobium loti MAFF303099] Length = 432 Score = 302 bits (773), Expect = 9e-80, Method: Composition-based stats. Identities = 125/442 (28%), Positives = 200/442 (45%), Gaps = 20/442 (4%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 + + I +S L K + L P + V+DPT AD S T+++F Sbjct: 1 MQDQGAPRAASNSIDGTLNLSSSLGKTVHL--PAPATTIFVADPTIADYQAASNTTIFVF 58 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 GK G+ ++ + G+ + L I++ + I L L + DS+I+V +L G Sbjct: 59 GKKSGRTSLFALDDKGEALAALRIVVTQPIEELRAMLMDQVGDSSIQVSYTPRGAILSGT 118 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + + A ++E +L +V+N + +AG QV L V +AEV R + Sbjct: 119 APNAEVADTAKRVTEQYLGDGA----------QVVNNIKVAGSLQVNLSVRVAEVSRSAM 168 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--SFETVLHALERATA 268 K +G S G + G + G + + + VL AL + Sbjct: 169 KALGVNLSAFGQIDNFRVGLLSGGGTGSGAAQGGGTAGIGFNNGAVNIGAVLDALAKEHI 228 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 LAEP LTA+SG++ASF +GG+ + SV +GV L F PTVL+ RI Sbjct: 229 ASVLAEPNLTAMSGETASFLAGGEFPIPVL-QENKQVSVEFRHFGVSLEFVPTVLNNNRI 287 Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + ++ EVSE + +N +P+ R+ADT VEL SG + + GL++ ++ Sbjct: 288 NIHVKPEVSELSSQGAVQINGISVPAVSTRRADTVVELASGQSFAIGGLIRRNVNNNVSA 347 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAF 443 P L ++PILGALFR+S F +EE+E+ I TP++VKP + +S P D + D Sbjct: 348 FPWLGEMPILGALFRSSSFQKEESELIILVTPYIVKPGSSPNQMSAPTDRMAPALDDPPA 407 Query: 444 FFNRVNKIYGPKEASEVEGQNY 465 R G+ + Sbjct: 408 DPPRGRAAARTGAPGAKRGRGF 429 >gi|148557761|ref|YP_001265343.1| type II and III secretion system protein [Sphingomonas wittichii RW1] gi|148502951|gb|ABQ71205.1| type II and III secretion system protein [Sphingomonas wittichii RW1] Length = 526 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 134/493 (27%), Positives = 211/493 (42%), Gaps = 68/493 (13%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 + + + + + AAV + + + +SIG + ++ + + D+ Sbjct: 12 ALITAIALAPVAASAAVRPSRGAAAVRTATIGKPSETTTLSIGSGQ--MIALSAPISDLF 69 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V+D ADV V S +YLFGK G+ V G + + + + +I ++ L+ Sbjct: 70 VADDKIADVQVRSTTQLYLFGKGAGETAVYATDKAGNVVWSSIVRVGSNITSVDTMLKLA 129 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + ++ I ++ V+L G V + D + A +L E F+ + +V+N L Sbjct: 130 MPEAAITATTMNGIVLLTGTVASPSDVEEAQKLVEQFVGKET----------QVVNRLKS 179 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQ---------------------------------- 216 A QV+L V IAEV R+ K IG Sbjct: 180 AVPLQVSLHVKIAEVSREFAKSIGINLLNRDTTGGFLFGVAQGRNFGSIGNLDTSAFPKL 239 Query: 217 -----------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 + TG ++ D GK G F + G Sbjct: 240 DASSLYGLPAGSLSLPFNPATGQFIAGGTAYTFDKLGKGAGSGTSFGLAGKFLGMDLAAA 299 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + E + TLA+P LTAISG++ASF +GG+ ++ GA SV YGV L FT Sbjct: 300 IDLAEADGLVTTLAQPNLTAISGETASFLAGGEIPIP-LAQGLGAVSVEFKQYGVSLSFT 358 Query: 320 PTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PTVL GRI +R++ EVS+ +N +P R+A+TTVEL SG ++ GLL Sbjct: 359 PTVLGDGRISIRVRPEVSQLTDAGSVRLNGFTIPGITTRRAETTVELGSGQAFMIGGLLS 418 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 + + P L +PILGALFR++ F R ETE+ I TP+LVKPV+ + ++ P Sbjct: 419 NAQNSNVDKAPFLGDLPILGALFRSNGFKRNETELMIVVTPYLVKPVSPQQIALPTAGLR 478 Query: 436 VEDDAKAFFFNRV 448 D + + Sbjct: 479 AATDGERLIAGQT 491 >gi|299067807|emb|CBJ39018.1| pilus assembly secretion protein [Ralstonia solanacearum CMR15] Length = 635 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 117/461 (25%), Positives = 217/461 (47%), Gaps = 50/461 (10%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++++ + K ++Q+ V+ V +P ++ SP+T+YL G++VG N+I+ G G Sbjct: 97 EVTVPVGKSTMVQLSEPVRSRTVGNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSC 156 Query: 109 MLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +D+ + D L+ TL + + S +RV +D++VL G V +Q+ ++++ F Sbjct: 157 SV-IDVSVGADPGGLQATLHALMPEASRVRVSAAADSLVLGGTVSDSVQAQKIMDIANAF 215 Query: 168 LSQSGRNQYANS-------------------------------SSKKVMNLLNIAGEDQV 196 + + R + + +++N++++ QV Sbjct: 216 VMRETRGPAQSGQAGTMGMQGMTAMSTGNAATASSGSGSGEAVRNPRIINMMSVEAPQQV 275 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 L+V +AEV + ++ Q+G ++ GS S+ F+S D ++ F Sbjct: 276 MLEVKVAEVSKTLINQMGAALNLNGSFG----SWTFGALANFLSGAPDIFSVDKANKLPF 331 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-STGATSV--TTHDYG 313 + L A + ++ LAEP L AISGQ ASF +GG+ S +G TS+ +G Sbjct: 332 QLKLDAQKGDGLVKVLAEPNLMAISGQEASFLAGGKVYIPVPQSFGSGTTSILLQEETFG 391 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVELPS 364 V L FTPTVL GRI L++ EVSE +P R+A TT+++ Sbjct: 392 VGLRFTPTVLENGRINLKVAPEVSELSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHD 451 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G + + GL+K +I + IP + ++P++GAL R++ F +++TE+ TP LVKP+ Sbjct: 452 GQSFAIGGLIKSNITGSLKAIPGVGELPVIGALARSTSFQQDQTELLFVVTPHLVKPL-P 510 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 + P D + + + + + + A ++ Sbjct: 511 ANYPMPTDSFGPVNQGEVYLNGNMEGHPAQRPAPASTQGSF 551 >gi|319782173|ref|YP_004141649.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168061|gb|ADV11599.1| type II and III secretion system protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 481 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 120/453 (26%), Positives = 206/453 (45%), Gaps = 32/453 (7%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 A DV +I + +++ + +QV ++ D++V D AD + RT+Y+ GK Sbjct: 28 AADRFIDVSTPAVHRIFLPMSQSVTIQVSANLGDIVVGDEKIADAQPMTDRTLYVIGKGA 87 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G V L D + + L I + D++ + +R+ S I V V+ V L G V+ Sbjct: 88 GTTTVNLFSTDKRSLGALQIEVGVDVSDMAQAIRQVAPKSRIEVGSVNGRVRLGGHVKDG 147 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + +++ + V+N + + QV L+V + E +R+ + +G Sbjct: 148 ATLAAIMAVAQQY------------GPDAVINSVIVDDSQQVNLEVRVLEAKRNTGRDLG 195 Query: 215 FQH---SITGSSSGPSKSFAADFGGKF-------------VSEGGDFSVKGVLDRFSFET 258 + G++ + A D G + G + + + Sbjct: 196 VSIKSRNGDGTTRTGTGVAAVDEDGVVLGPGGLLSGLLSNSAPFGALITRVIDSNIKVDL 255 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 ++ ALE A+RTLA P LT +SG+ ASF +GG+ +T+ G S+ +GV L F Sbjct: 256 IIEALESKGAVRTLANPNLTTLSGEQASFNAGGEVPIRTL-DKDGEISIVYKQFGVNLLF 314 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 TP VL G+I + + EVS+ AGD P + RK T VEL G + + GLL Sbjct: 315 TPVVLDDGKIHMNLAPEVSDLTGFTTAGD-PIFTNRKLATVVELRDGQSFAVGGLLSSKT 373 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVE 437 +L++ +P L ++P++G LFR+S +EETE+ + TP +V+PV L+ P D Sbjct: 374 TKLQDQVPWLGQVPVIGTLFRSSSNQKEETELVVIVTPHIVRPVKPGEQLATPFDKTRPA 433 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 +D + F ++ ++ G+ G G Sbjct: 434 NDPEFFVLGQL-EVTKDMVRKYETGEGVTGPYG 465 >gi|330876206|gb|EGH10355.1| type III secretion component [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 437 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 128/440 (29%), Positives = 206/440 (46%), Gaps = 27/440 (6%) Query: 10 TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69 T++ F ++ + E + G + + + + +L V V Sbjct: 5 TVLRFFTVAAGMLLIATGACAE---------TIAKGAKGTVDLAIGEGRVLHFSAPVDSV 55 Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 +V++P AD+ V SP +Y+FGK GQ ++I + +G++ L + + A + L+ Sbjct: 56 MVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDSEGRETAALSLAVSSGTAAVTRPLKA 115 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 S R+ V+ G V+ + ++ L LS G+N + +N Sbjct: 116 LHPQSQARINASGSRVIASGSVQDVGEATDLNAL----LSTEGQNF------QSTVNSAT 165 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFS 246 AG QV ++V AEV R L + G + G+ S + S Sbjct: 166 YAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNGTFSFGLLTGGGLAADAAGGASNVIS 225 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + +L AL+ + LAEP +TA++GQ+ASF +GG+ V + Sbjct: 226 AGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMTGQTASFLAGGEVAVP-VPVNREVVG 284 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVEL 362 + YGV L F+PT+L GRI L+++ EVS + VN +PS+RVR+ADT VE+ Sbjct: 285 IEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTSTLDVNGYQVPSFRVRRADTRVEV 344 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 SG T +AGL + + Q + +P+L +PILG LFR+ RF R ETE+ I TP+LV+PV Sbjct: 345 GSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRSKRFQRNETELVILITPYLVEPV 404 Query: 423 AMRDLSRPDDHYSVEDDAKA 442 R ++ P D A A Sbjct: 405 KARVVATPLDKQRAASTASA 424 >gi|170692564|ref|ZP_02883726.1| type II and III secretion system protein [Burkholderia graminis C4D1M] gi|170142220|gb|EDT10386.1| type II and III secretion system protein [Burkholderia graminis C4D1M] Length = 614 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 119/455 (26%), Positives = 209/455 (45%), Gaps = 25/455 (5%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 S N + A+ + AA + + + + K ++Q V++ + +P Sbjct: 56 MTISMNAAPAQPSSAMQNAAARGPACTRTQSEQSTVVVPVGKSTLMQTAEPVRNRTLGNP 115 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 A + SP+T+Y+ G VG N+I+ G G +++++ D L+ +L + + D Sbjct: 116 LIAQATMVSPKTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADAGGLQTSLSQLMPDE 174 Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS------QSGRNQYANSSSKKVMNL 187 IRV V+ +VL G V + Q + +A E+++ + N N S V+N+ Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARTTLPNPNGAANGNGNGKSATVLNM 234 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 +++ QV L+V +AEV + +L Q+ + G S++ ++ Sbjct: 235 MSVDSPQQVMLEVKVAEVSKTVLNQL----GAAMNIQGGFGSWSGALISSLLAGVSSIVD 290 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + F + A ++ LAEP L +SGQ A+F +GG+ S+ S Sbjct: 291 VNKANNRPFNVAIDAQHGDNLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGVST 350 Query: 308 ---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRK 355 ++GV L FTPTVL+ GRI L++ EVSE N +P R+ Sbjct: 351 IILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITTRR 410 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A TTV++ G T + GL+K + + IP + ++P+LGALFR++ + ++ TE+ T Sbjct: 411 ASTTVQMNDGETFAIGGLIKSNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELVFIIT 470 Query: 416 PFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVN 449 P LVKP+ +L P DH ++A + + Sbjct: 471 PHLVKPLQTASNLPLPTDHLKTPNEADVYLMGNME 505 >gi|307726375|ref|YP_003909588.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] gi|307586900|gb|ADN60297.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] Length = 616 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 114/457 (24%), Positives = 208/457 (45%), Gaps = 27/457 (5%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 S N + + ++ AA + + + + K ++ V++ + +P Sbjct: 56 MTISMNAAPPQPASAMQSAAARGPACTRTQSDQRTVVVPVGKSTLMPTAEPVRNRTLGNP 115 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 A + SP+T+Y+ G VG N+I+ G G +++++ D L+ +L + + D Sbjct: 116 LVAQATMVSPQTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADSGGLQTSLSQLMPDE 174 Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS--------GRNQYANSSSKKVM 185 IRV V+ +VL G V + Q + +A E+++ + + N A + V+ Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARSTLPGASGGANGNGTAAGKTATVL 234 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 N++++ QV L+V +AEV + +L Q+ + G S++ ++ Sbjct: 235 NMMSVDSPQQVMLEVKVAEVSKTVLNQL----GAAMNIQGGFGSWSGALISSLLAGVSSI 290 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 + F + ++ LAEP L +SGQ A+F +GG+ S+ Sbjct: 291 VDVNKANNRPFNVAIDGQHGDNLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGV 350 Query: 306 SV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRV 353 S ++GV L FTPTVL+ GRI L++ EVSE N +P Sbjct: 351 STIILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITT 410 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+A TTV++ G T + GL+K++ + IP + ++P+LGALFR++ + ++ TE+ Sbjct: 411 RRASTTVQMNDGETFAIGGLIKNNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELVFI 470 Query: 414 ATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVN 449 TP LVKP+ +L P D ++A + + Sbjct: 471 ITPHLVKPLQTAANLPLPTDRLKTPNEADVYLMGNME 507 >gi|307293450|ref|ZP_07573296.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] gi|306881516|gb|EFN12732.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] Length = 499 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 131/429 (30%), Positives = 215/429 (50%), Gaps = 32/429 (7%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 NAA ++ D I + + ++ +P + DV++ DP DV V S +YL K Sbjct: 36 NAAPASMQDNA------ILLSVGGSKVINLPAKMSDVVIGDPDVVDVHVRSQNQLYLIAK 89 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G+ V +GK + + + + ++ ++ L+ + ++ I V ++ V+L G + Sbjct: 90 KAGETTVFATAINGKVLFSGTVRVGNNLTSIDDMLKLAMPNAEIAVNKMNGMVLLTGTIA 149 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 +D+ A L++ F+ + V++ L A QV L+V IAEV +D+ + Sbjct: 150 APEDAAEAERLTQAFVGKEVT----------VVSRLRTATPLQVNLQVKIAEVSKDVGHK 199 Query: 213 IGFQHSITGSSSGPSK-----------SFAADFGGKFV-SEGGDFSVKGVLD--RFSFET 258 IG + G +F + GG F + G +S+ GV Sbjct: 200 IGMNWKSQDLTGGKWAGGIGGGTRDAITFNSGGGGTFNFTADGGYSLAGVARVLGLDLGA 259 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 VL E + TLA+P LT++SG++ASF +GG++ Y TVS+ T S+ YGV L F Sbjct: 260 VLDLAESSGLATTLAQPNLTSLSGETASFLAGGEYPY-TVSNGTQGNSIEFKQYGVQLAF 318 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 TPTVL+ GRI LR++ V + + +P+ R R A+TTVEL SG ++AGLL +D Sbjct: 319 TPTVLADGRISLRVRPTV-SSLDFSVSSSVPALRSRTAETTVELGSGQAFMIAGLLNNDT 377 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 +P + +PILG+LF++ F R ETE+ I TP+LVKP+ D+ P D + + Sbjct: 378 ANNINKVPGIGNLPILGSLFKSRNFQRHETELVIVVTPYLVKPMNASDVRLPTDGFRNAN 437 Query: 439 DAKAFFFNR 447 + + F + Sbjct: 438 EGQGLFLQQ 446 >gi|152994347|ref|YP_001339182.1| type II and III secretion system protein [Marinomonas sp. MWYL1] gi|150835271|gb|ABR69247.1| type II and III secretion system protein [Marinomonas sp. MWYL1] Length = 463 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 125/446 (28%), Positives = 220/446 (49%), Gaps = 20/446 (4%) Query: 8 FFTMMSIFLFSSNPSVAKLPPI---KEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 + +FL S A L P+ E+ + + + ++ +++ +N+ +L +P Sbjct: 10 VPLLFGVFLLSGVSRAAYLEPMNNTSESQSVIGTSAYQQVEVSGNVNLVVNRGKLLTLPQ 69 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 + VL+++P A + SP +++F K G ++ + + + +L L + D+ L Sbjct: 70 NAAKVLIANPDIASFQMPSPDNVFVFAKKSGSTSLYALDDENQVILALTLNAGYDLNSLT 129 Query: 125 MTLRRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK- 182 + + + SN++V ++ +++ G V+T Q ++R ++ E F+ S Sbjct: 130 KQVAQEVPGSNVQVGPATENGLIVRGSVQTPQQAKRVIDSVEAFVGGDATGSAGAGSQTL 189 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++N L + Q+ + V I EV R++ +GF + K FA + F + Sbjct: 190 RIVNQLKVELSSQINISVRIVEVSRNLSSSLGFSWDALFDNG---KYFARNSASLFDATT 246 Query: 243 GDFSVKGVLD------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G F+ GV + + VL AL LAEP LTA+SG++A F GG+ Sbjct: 247 GAFTGSGVTNAVFGGASGNLGGVLSALSNDGLASILAEPNLTAMSGETAGFAVGGEVPIV 306 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYR 352 ++++ ++ YGV++ TPT+LSP RI L I EVS+ + + +P+++ Sbjct: 307 IITNNN--VTIEYKQYGVIMRMTPTLLSPNRISLHIAPEVSDLTEEGAVELQGLTVPAFK 364 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 VR+ADTTVEL SG + LAG+L+ + Q G+P L IP LG LF + +EETE+ I Sbjct: 365 VRRADTTVELASGQSFALAGMLRSSVSQTVTGVPGLRSIPGLGRLFESETNQKEETELVI 424 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVED 438 AT ++V P + DL P S D Sbjct: 425 IATAYVVAPTSSGDLQTPAKGISTID 450 >gi|330985203|gb|EGH83306.1| type III secretion component [Pseudomonas syringae pv. lachrymans str. M301315] Length = 429 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 125/409 (30%), Positives = 200/409 (48%), Gaps = 18/409 (4%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 ++ G + + + + +L + V+V++P AD+ V SP +Y+FGK GQ ++I Sbjct: 19 NIAKGAKGTVDLAIGEGRVLHFSAPLDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLI 78 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + +G++ L + + A + L+ S R+ V+ G V+ + ++ Sbjct: 79 ALDSEGRETAALSLAVSSSTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDL 138 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI- 219 L LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 139 NAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNAL 188 Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 G+ S + A S + + +L AL+ + LAEP + Sbjct: 189 FNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNI 248 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TA++GQ+ASF +GG+ V + + YGV L F+PT+L GRI L+++ EVS Sbjct: 249 TAMTGQTASFLAGGEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVS 307 Query: 338 ----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PI Sbjct: 308 SLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPI 367 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 LG LFR+ RF R ETE+ I TP+LV+PV R ++ P D A A Sbjct: 368 LGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 416 >gi|295700370|ref|YP_003608263.1| type II and III secretion system protein [Burkholderia sp. CCGE1002] gi|295439583|gb|ADG18752.1| type II and III secretion system protein [Burkholderia sp. CCGE1002] Length = 634 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 113/464 (24%), Positives = 213/464 (45%), Gaps = 37/464 (7%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88 + A N + EI +S+ + K I++ + ++ + +P A + S RT+Y Sbjct: 84 VAPAQLTGPNCT-GEIRDESNVSVAVGKSILVPLVEPARNRTLGNPVVAQATLVSQRTLY 142 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVL 147 + G +VG N+I+ G G + +D+ + D L+ TL + + + IRV + +VL Sbjct: 143 VVGMSVGTTNMIVQGRSGACQI-IDVSVGVDAEGLQRTLAQLLPNERGIRVSSAAGNLVL 201 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK------------------KVMNLLN 189 G V + Q +Q+A+ ++ + Q +S++ +V+N++ Sbjct: 202 AGRVSSGQAAQQAMSIAGAYAGAQPTQQDQSSTASFGNGGSISQQSSSVSKGSEVINMMT 261 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + QV L+V +AEV + +L Q+ + G S+ ++ Sbjct: 262 VDSPQQVMLEVKVAEVSKTLLNQL----GAAVNIQGGFGSWTGALVSSLLAGVSSGVAVS 317 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-TGATSVT 308 + F + A + + + LAEP L +SGQ ASF +GG+ S+ TG +++T Sbjct: 318 KANNRPFNIAVDAQKSDSLGKILAEPNLVTLSGQEASFLAGGRVFIPVPQSNGTGGSTIT 377 Query: 309 --THDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMPSYRVRKAD 357 ++GV L FTPTVL+ R+ L++ EVS + + +P R+A Sbjct: 378 LQEEEFGVGLKFTPTVLAGSRVNLKVAPEVSELSPTGVTVQATGTSSTAILPLITTRRAS 437 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTV++ G + + GL++++I + +P + ++P+LGALFR++ F ++ TE+ T Sbjct: 438 TTVQMNDGESFAIGGLIQNNITGALKALPGIGEVPVLGALFRSTSFQQDRTELIFIVTVH 497 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 LVKP+ D P D ++ D + + + + Sbjct: 498 LVKPLPPGDYPLPTDSFTGVSDGTVYATGNMEGRRPTASPNAPQ 541 >gi|330953268|gb|EGH53528.1| type III secretion component [Pseudomonas syringae Cit 7] Length = 438 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 201/413 (48%), Gaps = 18/413 (4%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 N + G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ Sbjct: 24 ANAETIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKTAGQ 83 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 ++I + +G++ L + + A + L+ S R+ V+ G V+ + + Sbjct: 84 TSLIALDSEGRETATLSLAVSSGTAAVSRPLKALHPQSQARINASGSRVIASGAVQDVGE 143 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + L LS G+N + +N AG QV ++V AEV R L + G Sbjct: 144 ATDLNAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVN 193 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---VLDRFSFETVLHALERATAIRTLA 273 + ++ S + G +V + + +L AL+ + LA Sbjct: 194 WNALFNNGTFSFGLLTGGSLAADAASGASNVISAGLTSGNVNIDAMLEALQNNGVLEVLA 253 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 EP +TA++GQ+ASF +GG+ V + + YGV L F+PT+L GRI L+++ Sbjct: 254 EPNITAMTGQTASFLAGGEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVR 312 Query: 334 TEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 EVS + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L Sbjct: 313 PEVSSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLG 372 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +PILG+LFR+ RF R ETE+ I TP+LV+PV R + P D A A Sbjct: 373 DMPILGSLFRSKRFQRNETELVILITPYLVEPVKERVAATPLDKQRAASTAAA 425 >gi|71733713|ref|YP_274717.1| type III secretion component [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554266|gb|AAZ33477.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 437 Score = 300 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 127/409 (31%), Positives = 200/409 (48%), Gaps = 18/409 (4%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 ++ G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I Sbjct: 27 NIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLI 86 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + DG++ L + + A + L+ S R+ V+ G V+ + ++ Sbjct: 87 ALDSDGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDL 146 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI- 219 L LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 147 NAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNAL 196 Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 G+ S + A S + + +L AL+ + LAEP + Sbjct: 197 FNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNI 256 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TA++GQ+ASF +GG+ V + + YGV L F+PT+L GRI L+++ EVS Sbjct: 257 TAMTGQTASFLAGGEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVS 315 Query: 338 ----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PI Sbjct: 316 SLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPI 375 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 LG LFR+ RF R ETE+ I TP+LV+PV R ++ P D A A Sbjct: 376 LGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 424 >gi|309780760|ref|ZP_07675501.1| type II and III secretion system protein:Transport-associated [Ralstonia sp. 5_7_47FAA] gi|308920442|gb|EFP66098.1| type II and III secretion system protein:Transport-associated [Ralstonia sp. 5_7_47FAA] Length = 603 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 112/452 (24%), Positives = 215/452 (47%), Gaps = 40/452 (8%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + ++++ + K ++Q+P V+ V +P ++ SP+T+Y+ G VG N+I+ G Sbjct: 92 MRSHSEVTVPVGKSTMVQLPEPVRSRTVGNPNVVQAMLVSPQTLYVLGLEVGSTNMIVQG 151 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G + +D+ + D L+ TLR+ + ++ N++V +D++VL G V +Q+ V+ Sbjct: 152 RSGSCSV-VDVAVGADPGGLQSTLRKLMPEARNVQVSAAADSLVLGGSVSDSVQAQKVVD 210 Query: 163 LSETFLSQSGRNQ--------------------YANSSSKKVMNLLNIAGEDQVTLKVTI 202 ++ F+ + R A S +++N++ + QV L+V + Sbjct: 211 IANAFVMRRTRGPNEGDQNATGQGGQQLHTAGPGAPLRSPRIINMMTVEAPQQVMLEVKV 270 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 AEV + ++ Q+ +++G S++ F+S D + + L A Sbjct: 271 AEVSKTLIDQM----GAAFNANGAFGSWSFGAIANFLSGSSDIVNFSKANHLPLKFALDA 326 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHD--YGVVLHF 318 + ++ LAEP+L AISGQ ASF +GG+ + G ++ + +GV L F Sbjct: 327 QKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVAQGAAANGVATIVLQEETFGVGLRF 386 Query: 319 TPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMPSYRVRKADTTVELPSGGTIV 369 TPTV+ GRI L++ EVSE N +P R+A TT+++ G + Sbjct: 387 TPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSILPLITTRRASTTLQVHDGQSFA 446 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + GL+K++I + +P + ++PI+G+L R++ F +++TE+ TP LVKP+ Sbjct: 447 IGGLIKNNITGSLKALPGIGELPIIGSLARSTSFQQDQTELLFVVTPRLVKPL-PAQYPL 505 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 P D + + + + + + Sbjct: 506 PTDSFGTINRGELYLNGNMEGHVQAPASQPTA 537 >gi|289624387|ref|ZP_06457341.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646614|ref|ZP_06477957.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868629|gb|EGH03338.1| type III secretion component [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 429 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 126/409 (30%), Positives = 200/409 (48%), Gaps = 18/409 (4%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 ++ G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I Sbjct: 19 NIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLI 78 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + +G++ L + + A + L+ S R+ V+ G V+ + ++ Sbjct: 79 ALDSEGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDL 138 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI- 219 L LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 139 NAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNAL 188 Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 G+ S + A S + + +L AL+ + LAEP + Sbjct: 189 FNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNI 248 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TA++GQ+ASF +GG+ V + + YGV L F+PT+L GRI L+++ EVS Sbjct: 249 TAMTGQTASFLAGGEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVS 307 Query: 338 ----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PI Sbjct: 308 SLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPI 367 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 LG LFR+ RF R ETE+ I TP+LV+PV R ++ P D A A Sbjct: 368 LGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 416 >gi|241662165|ref|YP_002980525.1| type II and III secretion system protein [Ralstonia pickettii 12D] gi|240864192|gb|ACS61853.1| type II and III secretion system protein [Ralstonia pickettii 12D] Length = 603 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 117/472 (24%), Positives = 220/472 (46%), Gaps = 43/472 (9%) Query: 27 PPIKEANAAVINISDVEIGKGK---KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83 P EAN G + ++++ + K ++Q+P V+ V +P ++ S Sbjct: 72 PATAEANRDSAGKGPNCTGPMRSHSEVTVPVGKSTMVQLPEPVRSRTVGNPNVVQAMLVS 131 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVS 142 P+T+Y+ G VG N+I+ G G + +D+ + D L+ TLR+ + ++ N++V + Sbjct: 132 PQTLYVLGLEVGSTNMIVQGRSGSCSV-VDVAVGADPGGLQSTLRKLMPEARNVQVSAAA 190 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ--------------------YANSSSK 182 D++VL G V +Q+ V+++ F+ + R A S Sbjct: 191 DSLVLGGSVSDSVQAQKVVDIANAFVMRRTRGPNEGEQNATGQGGQQLHTAGPGAPLRSP 250 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++N++ + QV L+V +AEV + ++ Q+ +++G S++ F+S Sbjct: 251 RIINMMTVEAPQQVMLEVKVAEVSKTLIDQM----GAAFNANGAFGSWSFGAIANFLSGS 306 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS- 301 D + + L A + ++ LAEP+L AISGQ ASF +GG+ + Sbjct: 307 SDIVNFSKANHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVAQGAA 366 Query: 302 -TGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMP 349 G ++ + +GV L FTPTV+ GRI L++ EVSE N +P Sbjct: 367 ANGVATIVLQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSILP 426 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R+A TT+++ G + + GL+K++I + +P + ++PI+G+L R++ F +++TE Sbjct: 427 LITTRRASTTLQVHDGQSFAIGGLIKNNITGSLKALPGIGELPIIGSLARSTSFQQDQTE 486 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + TP LVKP+ P D + + + + + + Sbjct: 487 LLFVVTPRLVKPL-PAQYPLPTDSFGTINRGELYLNGNMEGHVQAPASQPTA 537 >gi|227819321|ref|YP_002823292.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234] gi|227338320|gb|ACP22539.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234] Length = 496 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 115/448 (25%), Positives = 209/448 (46%), Gaps = 34/448 (7%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 G +++++ N I ++ D+++ DVV S +++++ GK G N+ + Sbjct: 46 TGSVQQVTLAPNDTITVRTGKPFGDLVIGSAEMIDVVPLSDQSLFIRGKQTGATNISVYD 105 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + +D+ + D + + +R + +RV +D + L G VR + QR +E+ Sbjct: 106 DNKALVGVIDVRVAADFSEVASAIRSTAPSAQVRVFNSNDRIRLTGTVRDAVELQRVMEI 165 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 ++++ S++ V+N L +A QV L+V + E R + +G S G + Sbjct: 166 AQSY------------SAEPVLNQLRVAESQQVMLEVRVIEASRQTGRDLGIGWSGQGRN 213 Query: 224 S----GPSKSFAADFGGKFVSEGGDFSVKGV--------------LDRFSFETVLHALER 265 S+ D G GD + + + V++ALE+ Sbjct: 214 GIGKATTSQGITVDDDGNLARTLGDAAGAATGMQPFGQLIAKVLEISGGQIDIVINALEQ 273 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVL 323 +R LA+P L A+SG++ASF +GG+ + + +T AT +GV L F+P VL Sbjct: 274 KGLVRRLAQPNLIAMSGETASFHAGGEVPIQSTVANGATLATETDYRPFGVRLTFSPVVL 333 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G I L+I+ EVSE ++ P + R A TTV L G + +AGLL+ + + Sbjct: 334 DGGLISLKIEPEVSEIDPSISVNGNPGFISRAASTTVALRDGQSFAMAGLLQSVNAKDVQ 393 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKA 442 +P L ++P++GALFR++ F + E+++ I TP +V+P DL P + +D + Sbjct: 394 QLPWLGQVPVIGALFRSTSFLKRESDLVIVVTPHIVRPSKPGEDLYSPLEQTRSSNDVEL 453 Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIG 470 F + ++ G+ KG G Sbjct: 454 FALG-ILEVDKDMLRRFRNGEGVKGPYG 480 >gi|320324504|gb|EFW80581.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320328376|gb|EFW84379.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. race 4] Length = 429 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 126/409 (30%), Positives = 200/409 (48%), Gaps = 18/409 (4%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 ++ G + + + + +L V V+V++P AD+ V SP +Y+FG+ GQ ++I Sbjct: 19 NIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGQAAGQTSLI 78 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + DG++ L + + A + L+ S R+ V+ G V+ + ++ Sbjct: 79 ALDSDGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDL 138 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI- 219 L LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 139 NAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNAL 188 Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 G+ S + A S + + +L AL+ + LAEP + Sbjct: 189 FNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNI 248 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TA++GQ+ASF +GG+ V + + YGV L F+PT+L GRI L+++ EVS Sbjct: 249 TAMTGQTASFLAGGEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVS 307 Query: 338 ----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PI Sbjct: 308 SLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQHESSQDMDKVPMLGDMPI 367 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 LG LFR+ RF R ETE+ I TP+LV+PV R ++ P D A A Sbjct: 368 LGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 416 >gi|300692331|ref|YP_003753326.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07] gi|299079391|emb|CBJ52062.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07] Length = 644 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 115/445 (25%), Positives = 210/445 (47%), Gaps = 41/445 (9%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + ++++ + K ++Q+P V++ V +P ++ SP+T+YL G+ VG N+I+ Sbjct: 120 AMRAHSEVTVPVGKSTMVQLPEPVRNRTVGNPNVVQAMLVSPQTLYLLGQEVGTTNMIVQ 179 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L TL + D+ +RV +D++VL G V +Q+ V Sbjct: 180 GRSGSCSV-IDVAVGADPGGLLATLHELVPDAKGVRVSAAADSLVLSGSVSDSVQAQKVV 238 Query: 162 ELSETFLSQSGRNQ----------------------YANSSSKKVMNLLNIAGEDQVTLK 199 +++ F+++ R A S +++N++ + QV L+ Sbjct: 239 DIANAFVTRQTRGPSQHDQGGGQGANSATQGAITAPGAQPRSPRIINMMAVEAPQQVMLE 298 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 V +AEV + ++ Q+G ++ + S A+ F+S D + + Sbjct: 299 VKVAEVSKTLIDQMGAAFNLNSAFGSWSFGAIAN----FLSSSQDLVSFSKANNLPLKFA 354 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVL 316 L A ++ LAEP+L AISGQ ASF +GG+ S TG + +GV L Sbjct: 355 LDAQRGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVPQSFTGGVTTIVLQEETFGVGL 414 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIG--------VNAGDM-PSYRVRKADTTVELPSGGT 367 FTPTV+ GRI L++ EVSE N + P R+A TT+++ G + Sbjct: 415 RFTPTVMENGRINLKVAPEVSELSPTGVAVTAANTNGTTILPLITTRRASTTLQVRDGQS 474 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 + GL+K ++ + +P + ++P++G+L R++ F R++TE+ TP LVKP+ Sbjct: 475 FAIGGLIKSNVTGSLKALPGIGELPVIGSLARSTSFQRDQTELLFVVTPRLVKPL-PAQY 533 Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIY 452 P D + + + + + Sbjct: 534 PMPTDSFGPINRGELYLNGNMEGRR 558 >gi|323529413|ref|YP_004231565.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] gi|323386415|gb|ADX58505.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] Length = 616 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 119/457 (26%), Positives = 214/457 (46%), Gaps = 27/457 (5%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 S NP+ A+ ++ AA + + + + K ++Q V++ + +P Sbjct: 56 MTISMNPAPAQPANTMQSAAARGPACTRTQSEQSTVVVPVGKSTLMQTAEPVRNRTLGNP 115 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 A + SP+T+Y+ G VG N+I+ G G +++++ D L+ +L + + D Sbjct: 116 LVAQATMVSPQTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADSGGLQTSLSQLMPDE 174 Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS--------GRNQYANSSSKKVM 185 IRV V+ +VL G V + Q + +A E+++ + + N A + + V+ Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARSTLPAANGGTNGNGGAPAKAATVL 234 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 N++++ QV L+V +AEV + +L Q+ + G S++ +S Sbjct: 235 NMMSVDSPQQVMLEVKVAEVSKTVLNQL----GSAMNIQGGFGSWSGALISSLLSGVQSI 290 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 + + F + ++ LAEP L +SGQ A+F +GG+ S+ Sbjct: 291 AAVSKANNRPFNVAVDGQHGDDLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGV 350 Query: 306 SV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRV 353 S ++GV L FTPTVL+ GRI L++ EVSE N +P Sbjct: 351 STIILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITT 410 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+A TTV++ G T + GL+K + + IP + ++P+LGALFR++ + ++ TE+ Sbjct: 411 RRASTTVQMNDGETFAIGGLIKSNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELIFI 470 Query: 414 ATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVN 449 TP LVKP+ A+ +L P D ++A + + Sbjct: 471 ITPHLVKPLQAVANLPLPTDRLKTPNEADVYLLGNME 507 >gi|298487093|ref|ZP_07005143.1| type II/III secretion system protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158336|gb|EFH99406.1| type II/III secretion system protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 437 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 127/409 (31%), Positives = 201/409 (49%), Gaps = 18/409 (4%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 ++ G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I Sbjct: 27 NIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLI 86 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 +G +G++ L + + A + L+ S R+ V+ G V+ + ++ Sbjct: 87 ALGSEGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDL 146 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI- 219 L LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 147 NAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNAL 196 Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 G+ S + A S + + +L AL+ + LAEP + Sbjct: 197 FNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNI 256 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 TA++GQ+ASF +GG+ V + + YGV L F+PT+L GRI L+++ EVS Sbjct: 257 TAMTGQTASFLAGGEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVS 315 Query: 338 ----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PI Sbjct: 316 SLMSTITLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPI 375 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 LG LFR+ RF R ETE+ I TP+LV+PV R ++ P D A A Sbjct: 376 LGNLFRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 424 >gi|284048526|ref|YP_003398865.1| type II and III secretion system protein [Acidaminococcus fermentans DSM 20731] gi|283952747|gb|ADB47550.1| type II and III secretion system protein [Acidaminococcus fermentans DSM 20731] Length = 590 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 181/414 (43%), Gaps = 34/414 (8%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 AA++ ++ + +S+ +N ++ + + V +P ADV + S L GK Sbjct: 14 AAILGMTGQALAAT-TLSVAVNGSRYMEASG-ITRLAVGNPEIADVRLLSGNDFLLVGKK 71 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G +++ +G++ ++ + A ++ I ++V+M++ V+L G V+ Sbjct: 72 PGSTTLLVWSDNGRE--EYNVFVSGSDAGTAQAIQEAIGYPEVQVQMMNGKVLLRGRVQN 129 Query: 154 IQDSQRAVELSETFLS-------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + A+++++ +L + G ++ ++++L++ QV L Sbjct: 130 QYEHDSAIKVAQMYLGSGGGTTSTAQAGGKEGTAAQGGTTDSNIIDMLDMTEPTQVRLVA 189 Query: 201 TIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADF----------GGKFVSEGGDFSVKG 249 I E+ K +G Q S T + S + D G F + G F G Sbjct: 190 QIIEINTSAEKDLGIQYWSPTLGDNTTGNSNSTDITRGTPGLFYAGENFYKQRGSFGWFG 249 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + L AL + R L+ P++T +SGQ A GG+ T S+ G ++ Sbjct: 250 SH-LSNLNASLQALVTSGKARILSRPSITTMSGQKAKILIGGRIPIPT-SAGDGQIAIDW 307 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSG 365 DYGV L P V + +I ++ EVS G N +P+ R+A+ + + SG Sbjct: 308 RDYGVKLDIEPVVDADNKITSKVHAEVSTLDYGHSVKENDFSIPAIASREAEAMINVRSG 367 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T+ + GLL + + IPLL IPI+G FR++ R+ E+ I TP LV Sbjct: 368 MTMAIGGLLNSEDSKSVSKIPLLGDIPIIGQFFRHTSTTRDNRELLILITPLLV 421 >gi|297581608|ref|ZP_06943530.1| flp pilus assembly protein [Vibrio cholerae RC385] gi|297534015|gb|EFH72854.1| flp pilus assembly protein [Vibrio cholerae RC385] Length = 469 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 115/457 (25%), Positives = 204/457 (44%), Gaps = 37/457 (8%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + + +N+ I+ V D+QDV VSDP V S R + + GK++G +++++G + Sbjct: 21 AESPLVLHVNQNQIITVDGDIQDVFVSDPKIVVVHAPSSRHVMVSGKDIGSTDLLIMGEN 80 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + + + + D++ LE ++ ++NIR +V+ G V + + ++ Sbjct: 81 AQTLAHYKLNVNADLSELERAVQHAFPEANIRFAYSKGAIVVMGEVANPLQAHEVLSMAS 140 Query: 166 TFL-----------------------SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 F S + + K V+N L G QV + + I Sbjct: 141 GFARGLQKPEQQTLDMPANSASSGRDSGAAKPGGGIGDYKFVVNQLKTQGSAQVNISIRI 200 Query: 203 AEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 E+ R +Q+G + S G+ G + G ++ ++ + ++ Sbjct: 201 VEMERATSEQLGLRWSSIGNMRWGTWDTLQTALGATPGNKFPTNTLPSGNGQHGLNVIID 260 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + + LAEP LTA SG++A+F SGG+ + + G S+ +G+ L TPT Sbjct: 261 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVDNGDDG-VSIEFKKFGIALEVTPT 319 Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 VLS +I L + EVS E + + ++P R+A TT+EL G + LAGL++ Sbjct: 320 VLSNRQISLTVAPEVSTLSRENSVSIAGVEVPGIETRRATTTIELADGQSFALAGLVRTY 379 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSV 436 E +P L +IPIL F + F E+E+ I AT LV+P + +L+ P D Y Sbjct: 380 QDHKVEALPFLGEIPILAPFFSTNSFKNSESELVIIATARLVEPSSDPAELTTPLDRYRP 439 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + F +++ + + E G G+ Y Sbjct: 440 ASRFERLFLHKMGETHD-------ESTRLFGHYGYNY 469 >gi|145219384|ref|YP_001130093.1| type II and III secretion system protein [Prosthecochloris vibrioformis DSM 265] gi|145205548|gb|ABP36591.1| type II and III secretion system protein [Chlorobium phaeovibrioides DSM 265] Length = 472 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 117/443 (26%), Positives = 197/443 (44%), Gaps = 48/443 (10%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + + + + ++ ++ V V +P AD ++ + +YL GK G N+IL GK Sbjct: 39 VPVGESRVYRLEQPIKRVAVGNPEVADYIMLNSSELYLLGKKTGATNLILWNQQGKFTST 98 Query: 112 LDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 L + + R+ ++ LR + + I++ + +VL G V ++ A L + +L Sbjct: 99 L-LQVSRNSYPIKQLLRTALPEESEIQIFSSGEALVLAGSVSNRLAAETAYRLVKAYLGG 157 Query: 171 SGRN----------------------------------QYANSSSKKVMNLLNIAGEDQV 196 + +++ V+NLL + QV Sbjct: 158 KVPDVNPESSLAKTTSASAASASIAGTTNGSSAVPVQASTQSTAPAGVVNLLTVRDTQQV 217 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 L+V IAEV + L+ +G + + FVS + Sbjct: 218 RLEVRIAEVSKTYLQTLGIGWQQ------GTGNTQGSLMTGFVSNATLNVLLQTKSNPGN 271 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 E + A + I+ LAEPTL A+SG+ F GG+ TV+S+ GA YGV L Sbjct: 272 ELSMDAERKEGVIKILAEPTLVAMSGEEGYFLVGGKVFTPTVTSN-GAIDYVERTYGVGL 330 Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 FTPTVL GRI L++ EVSEP V + +P ++ A +TV++ G +V+ G Sbjct: 331 RFTPTVLDSGRISLKVAPEVSEPLKEAVTAGTSTPLPGFKTSFASSTVQMNEGENLVIGG 390 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 LL+D++ ++ +PLLS IPILG+LFR++ + E TE+ + P L+K P D Sbjct: 391 LLRDNLTEVVRAVPLLSDIPILGSLFRHTEKSSETTELMVIIRPTLIKASTTAQ-ELPTD 449 Query: 433 HYSVEDDAKAFFFNRVNKIYGPK 455 ++ ++ F ++ G K Sbjct: 450 KFAPPSSSELFLEGKLQGSRGSK 472 >gi|85373131|ref|YP_457193.1| type II secretion system protein [Erythrobacter litoralis HTCC2594] gi|84786214|gb|ABC62396.1| type II secretion system protein [Erythrobacter litoralis HTCC2594] Length = 574 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 138/520 (26%), Positives = 232/520 (44%), Gaps = 72/520 (13%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 + ++R + ++ P A + A + V DV + + + ++ Sbjct: 25 KTMKRRLIAKALVASLAALPVAAGPAQVAHAQSIVKPSQDVV--------LSIGRGELIS 76 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 VP + DV +++ ADV + S R +Y+FGK+ G+ + G + ++ + +I Sbjct: 77 VPGAMADVFIANDAVADVQIKSQRQLYVFGKSGGETTIYASNSAGDVIWAANVRVANNID 136 Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L+ L + ++ I + +TV+L G V +D+ A L FL Sbjct: 137 SLDQMLALAMPEAKIATATMGTNTVLLTGTVAAPEDAAEAERLVTAFLGDGA-------- 188 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--------------- 225 V++ L +A QV L+V IAEV R ++++IG + ++ G Sbjct: 189 --NVISRLKMATPLQVNLQVRIAEVSRSLVREIGSNLTTRDTTDGFLFGVNRGRNFGSIT 246 Query: 226 -----------PSKSFAADFG----------GKFVSEGGDF------------SVKGVLD 252 S F G G+FV G +F + G L Sbjct: 247 DIDTSGFPQLDASAQFGLPPGSLSLPFNPATGQFVVGGANFPVASNNPGQTALNFAGRLF 306 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + ER I TL+ P LTA+SG++A+F +GG+ +S G TS+ ++ Sbjct: 307 GLDIASAFDVGERLGLITTLSNPNLTALSGETATFLAGGEFPIP-ISQGLGTTSIEYRNF 365 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTI 368 GV L ++PTVL+ GRI +R++ EVSE I +N +P+ R+A+TTVEL SG + Sbjct: 366 GVSLAYSPTVLANGRISIRVRPEVSELSSQGAITLNGFQIPALTTRRAETTVELGSGQSF 425 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 ++AGL+ + Q + P L +PI+G LFR++ F + ETE+ I TP+LVKPV D+ Sbjct: 426 MIAGLMSNSSQNTVDKAPGLGDVPIIGNLFRSTSFRKGETELVIVVTPYLVKPVDGTDIK 485 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 P D Y ++ + N + + Q+ G Sbjct: 486 LPTDGYQTPNELQRTLGFLENDGKTGGDRPKPTAQDRDGP 525 >gi|269105132|ref|ZP_06157826.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Photobacterium damselae subsp. damselae CIP 102761] gi|268160582|gb|EEZ39081.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Photobacterium damselae subsp. damselae CIP 102761] Length = 442 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 113/415 (27%), Positives = 189/415 (45%), Gaps = 36/415 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 +I+I V +++ + V ++ V +SDP AD V + +FGK +G Sbjct: 13 IISIYSVIASAESLLNLSEGDAATVPVDTEIDSVFISDPAIADYQVIDKNKVVIFGKKIG 72 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 N+ + ++G ++ N +++ + + ++ + D+NI + + VVL G V Q Sbjct: 73 HTNLFIFDNEGNELANRKVIVNKSLREIKQYISIKFPDANIDIFNFGEQVVLSGTVSNEQ 132 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKV 200 + T LS+ + N + ++N + + QV +K+ Sbjct: 133 VKDEINNIVGTLLSKKSNDFNFNLETDDQDYEVQFMKQKHFTGLVNNIEVLATRQVNVKL 192 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +IAEV L+QIG Q++ G + G + +F +V+ Sbjct: 193 SIAEVSHSFLEQIGVQYNSIGHAPGVFVNPLTNFSAS-----------------DILSVI 235 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 A+ + LAEP L+ ISG+SASF GG+ T+ T+VT ++GV L Sbjct: 236 TAIGNDGIGQVLAEPNLSVISGESASFLVGGELPVVTIV--DNGTNVTYKEFGVKLELLA 293 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 V +I L + EVS + D+P+ + R+A TTVEL G + VL GLL + Sbjct: 294 KVRKDDKITLSLMPEVSSLDTQYSNDKYDLPALKTRRARTTVELGDGQSFVLGGLLSTED 353 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 ++ +P + IP+LGALFRNSR R +TE+ I AT LV+P+ + P Sbjct: 354 KERLNKVPYIGDIPVLGALFRNSRTERNKTELIIVATVNLVQPIHPSQVQLPTIR 408 >gi|312621080|ref|YP_003993808.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp pilus assembly [Photobacterium damselae subsp. damselae] gi|311872801|emb|CBX86892.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Photobacterium damselae subsp. damselae] Length = 438 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 113/415 (27%), Positives = 189/415 (45%), Gaps = 36/415 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 +I+I V +++ + V ++ V +SDP AD V + +FGK +G Sbjct: 9 IISIYSVIASAESLLNLSEGDAATVPVDTEIDSVFISDPAIADYQVIDKNKVVIFGKKIG 68 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 N+ + ++G ++ N +++ + + ++ + D+NI + + VVL G V Q Sbjct: 69 HTNLFIFDNEGNELANRKVIVNKSLREIKQYISIKFPDANIDIFNFGEQVVLSGTVSNEQ 128 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKV 200 + T LS+ + N + ++N + + QV +K+ Sbjct: 129 VKDEINNIVGTLLSKKSNDFNFNLETDDQDYEVQFMKQKHFTGLVNNIEVLATRQVNVKL 188 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +IAEV L+QIG Q++ G + G + +F +V+ Sbjct: 189 SIAEVSHSFLEQIGVQYNSIGHAPGVFVNPLTNFSAS-----------------DILSVI 231 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 A+ + LAEP L+ ISG+SASF GG+ T+ T+VT ++GV L Sbjct: 232 TAIGNDGIGQVLAEPNLSVISGESASFLVGGELPVVTIV--DNGTNVTYKEFGVKLELLA 289 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 V +I L + EVS + D+P+ + R+A TTVEL G + VL GLL + Sbjct: 290 KVRKDDKITLSLMPEVSSLDTQYSNDKYDLPALKTRRARTTVELGDGQSFVLGGLLSTED 349 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 ++ +P + IP+LGALFRNSR R +TE+ I AT LV+P+ + P Sbjct: 350 KERLNKVPYIGDIPVLGALFRNSRTERNKTELIIVATVNLVQPIHPSQVQLPTIR 404 >gi|123443821|ref|YP_001007792.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090782|emb|CAL13664.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 453 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 114/418 (27%), Positives = 202/418 (48%), Gaps = 33/418 (7%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + + + + +++ ++ V VS AD + ++ ++ K G A IL Sbjct: 28 NRANAEPVYLSTGESYMIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILF 87 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 + + IL++ I +R +S+I + + D+ +L G V T + + Sbjct: 88 NQNHHPIKKSAILVDNTITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIAS 147 Query: 163 LSETFLSQS------------GRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + G +QY NS +V+N + + G +QV +K+TIAEV +D Sbjct: 148 IIGEAIGSEKTIASNSKKDSDGNSQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDF 207 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + IG S G+ SG + F + KF ++G ++HA+ + Sbjct: 208 SENIGMDWSTIGNFSGSFQFFKPNGLNKFNAKG-------------ISALVHAINDDSIA 254 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 R LAEP L+ +SG+SASF GG+ V+++ +T +T +G+ L+ V + RI Sbjct: 255 RVLAEPNLSVLSGESASFLVGGELP--LVNTTANSTVITYKQFGIKLNIGAKVNAKKRIR 312 Query: 330 LRIQTEVSEP--VIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 +++ EVS V ++ GD PS+R RKA TT+EL G + +L GL+ ++ + IP Sbjct: 313 IKLDEEVSSVDKVFNIDGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIP 372 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 + IPILGA FRN+ + +TE+ + AT LV+PV+ +++ P ++ + FF Sbjct: 373 FIGDIPILGAFFRNAETRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFF 428 >gi|149909547|ref|ZP_01898201.1| general secretion pathway protein D [Moritella sp. PE36] gi|149807452|gb|EDM67403.1| general secretion pathway protein D [Moritella sp. PE36] Length = 432 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 115/405 (28%), Positives = 196/405 (48%), Gaps = 38/405 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 K +++ + ++ ++ V ++DP AD V + +FGK +G ++I+ + Sbjct: 11 AQKIVNLSEGEAKTIKSIKEIASVFIADPEIADYQVIDANKVVVFGKKIGSTSIIVFDEN 70 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G + N ++I + + H++ ++ ++++ + V D VVL G+V T Q+ + Sbjct: 71 GDTITNNKLVINKSLVHIQQQIQLKYPNADVTIYNVGDQVVLSGIVATEQEKDDINIIVG 130 Query: 166 TFLSQSGRN---QYANSSSKK--------------VMNLLNIAGEDQVTLKVTIAEVRRD 208 L++ + Q+ ++ + ++N + +A QV +K++IAEV Sbjct: 131 ELLNKKSDDYIIQWESTGTDTKYEMEFMKRRHFAGIVNNIEVAAVKQVNVKLSIAEVSHS 190 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L+ G ++S G +SG + F +V+ A+ + Sbjct: 191 FLENFGIEYSSIGQTSGTFVNLVTKFSAS-----------------DIASVITAIADDSV 233 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + LAEP L+ ISG+SASF GG+ TV G T+V +YGV L VL +I Sbjct: 234 GQILAEPNLSVISGESASFLVGGELPVVTVV--DGTTNVLYKEYGVRLSLMAKVLRDDKI 291 Query: 329 GLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 L + EVS ++G ++P+ + R+A TTVEL G + VLAGLL + + + IP Sbjct: 292 ILSLSPEVSTLDNQYSSGTYNLPALKTRRARTTVELGDGQSFVLAGLLNTEDVESIKKIP 351 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 L IPILGALFR+S R +TE+ I AT LVKP+ + P Sbjct: 352 FLGDIPILGALFRSSSTQRNKTELIIVATVNLVKPIHASQVQLPT 396 >gi|326797327|ref|YP_004315147.1| type II and III secretion system protein [Marinomonas mediterranea MMB-1] gi|326548091|gb|ADZ93311.1| type II and III secretion system protein [Marinomonas mediterranea MMB-1] Length = 464 Score = 296 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 122/454 (26%), Positives = 217/454 (47%), Gaps = 22/454 (4%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAK--LPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 + + F T+ ++ S + A + + N+ + E+ ++ + +N+ +L Sbjct: 2 FSKYYFLTLFAVCSVQSTLAFATYDVDQPADNNSRIAESRFEEVAVSGQVKLHVNQGTLL 61 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P VL+++P A + SP +++F K G + + + ++ + + D+ Sbjct: 62 NLPKAASKVLIANPEVASFQMPSPDNVFVFAKAPGDTTLYALDENNDVIIAVTLTSGYDL 121 Query: 121 AHLEMTLRRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQRAVELSETFLSQS------GR 173 L + + + + ++V +D +++ G V+T Q +++ + E++L S G Sbjct: 122 EGLTRQVAKEVPGTEVQVGPATDKGLIVRGTVQTPQQAKQVISSVESYLGASTSANGRGG 181 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSK 228 ++ S +++N L +A QV + V I EV R + +GF + TG S Sbjct: 182 RGGQSNQSLRIVNQLKVALSSQVNISVRIVEVSRSLTHALGFSWDTLFDNNTGFIRNGSS 241 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 F A G S + G + VL AL LAEP LTA+SG++A F Sbjct: 242 LFDASTGVFDGSGISLGVLGGTIG--DVGGVLSALSNDGMASILAEPNLTAMSGETAGFA 299 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VN 344 GG+ + + ++ YGV++ TPT+LSP RI L I EVS+ +N Sbjct: 300 VGGEVPIVI--QTNNSVTIEYKQYGVIMRMTPTLLSPNRISLHIAPEVSDLSDDGSVVLN 357 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+++VR+A+TTVEL SG + LAG+L+ + Q G+P L IP+LG +F Sbjct: 358 DTTIPAFKVRRANTTVELASGQSFALAGMLRSSVSQTVSGVPGLRSIPVLGRMFETEINQ 417 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 +EETE+ I AT ++V+P + +L P S D Sbjct: 418 KEETELVIIATAYIVEPTSANNLQSPAQGISTID 451 >gi|261820214|ref|YP_003258320.1| type II and III secretion system protein [Pectobacterium wasabiae WPP163] gi|261604227|gb|ACX86713.1| type II and III secretion system protein [Pectobacterium wasabiae WPP163] Length = 475 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 131/448 (29%), Positives = 223/448 (49%), Gaps = 25/448 (5%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L ++ A LP + + AA ++ + +++ +L + VLV+DP Sbjct: 19 LLIASLFNAVLPVMLMSPAATQAAGVSVAPVTDEVHLTVHQGRLLHLDALPDSVLVADPN 78 Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 A + SP ++++ KNVG + + +GK + + ++ E D+ L ++R ++ Sbjct: 79 IASFELPSPGNLFVYAKNVGTTTLYAMDENGKVINAIRLVSEHDLKALSERIKREFPGAD 138 Query: 136 IRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ-----------YANSSSKK 183 I++E + V++ G V T QD++R ++ +T+++ S ++ +S K Sbjct: 139 IQLEASIPSGVIVRGSVDTPQDAKRVIDSIQTYINASSNGAQGGGGGGDQLPGSSETSGK 198 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAADFGGKFVSEG 242 V+N L I Q+ ++V + EV R + ++GF + + S+ SG + + F + Sbjct: 199 VVNQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTAGSGSRLNLFNATT 258 Query: 243 GDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G F+ +F +L A+ + LAEP LTA+SG++A+F +GG+ Sbjct: 259 GRFANPTDSGFLNFGRSRLGGLLTAMNQQGMATVLAEPNLTAMSGETAAFAAGGEVPIVL 318 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYR 352 ++ + S+ YGV+L TPT+LS RI L I EVSE V +P+ Sbjct: 319 IT--NNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQLEGGSRIPALT 376 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 VR+ADTTVEL SG + LAG+L+ Q G+P LS IP+ G LF + N EETE+ I Sbjct: 377 VRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSGIPMFGRLFESESTNHEETELVI 436 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDA 440 AT ++V+PV DL P + D + Sbjct: 437 IATAYVVEPVNAGDLQTPGQGIRMLDSS 464 >gi|162147491|ref|YP_001601952.1| type II and III secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|209545598|ref|YP_002277827.1| type II and III secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786068|emb|CAP55650.1| type II and III secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533275|gb|ACI53212.1| type II and III secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 473 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 139/491 (28%), Positives = 227/491 (46%), Gaps = 38/491 (7%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 ++ R M + S + A A + V G + I ++++ Sbjct: 2 FISRRVLPMAAFAGMSLCLAGADARSTHPAAS-----GSVAHGAHAVLGIEEGAGKLVKL 56 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 ++ V+DP +V SP +M++FG GQ VI G + +++ ++ Sbjct: 57 DGIATNIFVADPKVVEVRAASPDSMFVFGVGAGQTTVIATSRSGGVVARYTVVVLPS-SY 115 Query: 123 LEMTLRRFIADSNIRVE---MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 LRR + N RV ++ + G + + +++A+E + + + GR Sbjct: 116 RASALRRDVGQQNPRVRIGTGADGSIGIEGTETSSESAEQALEGATALVGKGGR------ 169 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 V + ++ G QV LKV I E+ R +++++G + + ++ G + + Sbjct: 170 ----VGDYASVPGSIQVNLKVRIVEMSRSLVRELGVEWQ-SVNALGTAAAIGISTSNPLA 224 Query: 240 SEGGDFSVKGVLDRFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + + S L RFS ETV+ AL + I +LAEP LT +SGQ+ASF GG+ Sbjct: 225 ALTTEQSAFNFLSRFSAAGRPVTVETVIDALSQDGLIHSLAEPNLTTVSGQAASFIVGGE 284 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------ 346 + VSS +V YG+ L F PTVL+ GRI L ++ EVS Sbjct: 285 YPIP-VSSYNNNINVQYKQYGISLAFVPTVLADGRISLHVRPEVSALSTQGAVTLSEANG 343 Query: 347 --DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ VR+ADTTVEL SG + +AGL++D G+P L IP+LGALF++S F Sbjct: 344 NLQIPALTVRRADTTVELGSGQSFAIAGLMQDSTNMQGLGLPFLGDIPVLGALFKSSSFQ 403 Query: 405 REETEIFIAATPFLVKPVAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 + E+E+ I TP+LV+PV L PDD+++ D F R N IY V + Sbjct: 404 KNESELVIVVTPYLVRPVDNESMLHSPDDNWAPPGDLDRIFLMRQN-IYKYAGKKNVARR 462 Query: 464 NYKGAIGFIYK 474 + GF+ + Sbjct: 463 DVNSDAGFMVE 473 >gi|193213115|ref|YP_001999068.1| type II and III secretion system protein [Chlorobaculum parvum NCIB 8327] gi|193086592|gb|ACF11868.1| type II and III secretion system protein [Chlorobaculum parvum NCIB 8327] Length = 472 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 117/454 (25%), Positives = 195/454 (42%), Gaps = 53/454 (11%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 I + + + ++ ++ V V +P AD ++ +P +YL GK G N+I+ Sbjct: 30 IAAPSTYRVSEGESRVYRMGSPIKRVAVGNPEIADYIILNPTELYLLGKKTGATNLIVWD 89 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 +G + + + R++ ++ +R + + +I + +VL G V ++ A Sbjct: 90 QNGNS-ASTPLQVSRNVEPIKDLIRTVLPNETDIHIYSSGPALVLAGTVSNSLAAETAYR 148 Query: 163 LSETFLS-------------------------------------QSGRNQYANSSSKKVM 185 L + +L G S V+ Sbjct: 149 LVKGYLGGDVPADNPEKTLTNTKPADSYAGTASLSGIVKSASLVAGGPTGAEGSGMSGVV 208 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 NLL + QV L+V IAEV + ++ +GF+ + G + + FVS Sbjct: 209 NLLKVRDAQQVRLEVHIAEVSKTFMQALGFEWA------GRIGNVSGGLMTGFVSNETIN 262 Query: 246 SVKGVLDRFSFETVLHALER--ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + + D S + A I+ LAEPT+ A+SGQ F GG+ T++ + G Sbjct: 263 LL--LKDNTSHSQRIKAENECDNGWIKILAEPTIVAMSGQEGYFLVGGKIYVPTIT-ANG 319 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVE 361 A YGV L FTPTVL GRI L++ EVSEP G + +++ A TTV+ Sbjct: 320 AVDYQERTYGVGLRFTPTVLDAGRISLKVAPEVSEPPTSAADGTGTLLAFKTSYASTTVQ 379 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G +V+ GLLKD I + + +PLL IP+LGALFR+++ E TE+ + P LV+ Sbjct: 380 MNEGQNLVIGGLLKDKITETLKAVPLLGDIPLLGALFRHTKIESENTELLVVVRPTLVEA 439 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 P D + + FF ++ + Sbjct: 440 SDTP-PELPTDRFIPPTQKELFFDGKLQGSRSGQ 472 >gi|50119734|ref|YP_048901.1| hypothetical protein ECA0789 [Pectobacterium atrosepticum SCRI1043] gi|49610260|emb|CAG73703.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043] Length = 478 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 131/460 (28%), Positives = 229/460 (49%), Gaps = 27/460 (5%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 Q T +++ LF++ V + A + E+ + + + +++ +LQ+ Sbjct: 12 FQGTCKRLLAAGLFNAVLPVTLTTMMLPA--TTMAAGVSEVAETNVVHLTVHQGRLLQLD 69 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 VLV+DP A + SP ++++ K+VG + + +G + + ++ E D+ L Sbjct: 70 ALPDSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKAL 129 Query: 124 EMTLRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ------- 175 ++R ++I++E + V++ G V T QD++R ++ + ++S S Q Sbjct: 130 GERMKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASAGGQGGGGGGG 189 Query: 176 ----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSF 230 ++ SS KV+N L I Q+ ++V + EV R + ++GF + + S+ SG + Sbjct: 190 EKLPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMSAG 249 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSA 285 + F + G F+ +F +L A+ + LAEP LTA+SG++A Sbjct: 250 SGSRLNLFNATTGRFANPTDSGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGETA 309 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PV 340 +F +GG+ ++ + S+ YGV+L TPT+LS RI L I EVSE V Sbjct: 310 AFAAGGEVPIVLIT--NNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSV 367 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS +P+ G LF + Sbjct: 368 QLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFES 427 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 ++EETE+ I AT ++V+PV DL P + D + Sbjct: 428 ESTSQEETELVIIATAYVVEPVNAGDLQTPGQGVKMLDSS 467 >gi|78186671|ref|YP_374714.1| type II secretion system protein [Chlorobium luteolum DSM 273] gi|78166573|gb|ABB23671.1| type II secretion system protein [Chlorobium luteolum DSM 273] Length = 486 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 117/455 (25%), Positives = 201/455 (44%), Gaps = 58/455 (12%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + + + + ++P V V V DP AD ++ +P +YL GK G N+ + GK + + Sbjct: 39 VPVGESRVYRLPQPVTRVAVGDPEVADYIMLNPSEIYLLGKKTGSTNLTVWDRKGK-VSS 97 Query: 112 LDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + + R++A ++ LR + I++ +VL G + A L + Sbjct: 98 RSLRVSRNVAPIQELLRVVLPGETGIQLYASGHALVLSGSASDAMAADTAYRLVIAYSGG 157 Query: 171 SGRNQYANSS--------------------------------------------SKKVMN 186 + S+ + +V+N Sbjct: 158 TVPALNPESALLAGSAGASGSVGAPGISGIHDSAPAAPSALPGAAASRSPAARDTPRVVN 217 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGGKFVSEGGD 244 LL I QV L+V IAEV R ++ +G + S+ S F ++ + + G Sbjct: 218 LLKIRDPQQVRLEVRIAEVSRSHIESLGIGWTQGRGSTQGSLMTGFVSNATLDLLLKTGG 277 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 +R + A ++ ++ LAEPT+ A+SG+ F GG+ T+ + G+ Sbjct: 278 MPGSTEGNRL----TVDAEQKKGLVKILAEPTIVAMSGEEGYFLVGGKVYTPTL-GTNGS 332 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTV 360 YGV L TPTVL GRI L++ EVSEP V + +P++++ A TTV Sbjct: 333 VDYVERTYGVGLRCTPTVLDSGRISLKVAPEVSEPLKEAVTAGTSTSLPAFKLSYASTTV 392 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++ G +V+ GLL+D++ ++K +PLLS IP+LG+LFR++ N+E TE+ + P LVK Sbjct: 393 QMQEGENLVIGGLLRDNLTEVKRSVPLLSSIPVLGSLFRHTEMNKETTELMVIVRPTLVK 452 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 P D + + F +++ G K Sbjct: 453 AGNP-APELPTDRFVPPAPLELFIEGKLDGSGGAK 486 >gi|251789646|ref|YP_003004367.1| type II and III secretion system protein [Dickeya zeae Ech1591] gi|247538267|gb|ACT06888.1| type II and III secretion system protein [Dickeya zeae Ech1591] Length = 474 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 135/451 (29%), Positives = 224/451 (49%), Gaps = 34/451 (7%) Query: 33 NAAVINISDV-EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 +A + ++ V +I +I + +N+ +LQ+ VL++DP A + SP +++F Sbjct: 27 SATTLPVAAVTQIEATSEIRLNINQGRMLQLDHIPDSVLIADPAIASFELPSPGNVFVFA 86 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE-MVSDTVVLHGM 150 K VG + + DG+ + + +++E D+ L+ LRR D+ I++E V + V++ G Sbjct: 87 KGVGNTTLYAMDVDGQVVSAIHLVVEHDLDALKERLRREFPDAQIQLEASVPNGVIVRGS 146 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQ--------------YANSSSKKVMNLLNIAGEDQV 196 V T QD+++ ++ + ++ S ++ ++S+S V+N L + Q+ Sbjct: 147 VETPQDAKKVIDSVQAWVGASASSRGSAGGGGGGGSAMPASSSTSPNVVNQLKVRTPSQI 206 Query: 197 TLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 ++V + EV R + ++GF + G SG +F + F E G S+ Sbjct: 207 NIRVRVVEVSRKLTHELGFNWDSSLNRGRNTIGFGSGALSNFFSATSNTFSREAGSASLG 266 Query: 249 G--VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 S T+L AL LAEP LTA+SG++A+F +GG+ ++ + + S Sbjct: 267 YNYTGSDGSLGTLLSALNSQGMASVLAEPNLTAMSGETAAFAAGGEVPIVLITGN--SVS 324 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVE 361 + YGV+L TPT+LS RI L I EVSE + +P+ VR+ADTTVE Sbjct: 325 IDYKSYGVILRMTPTLLSANRISLHIAPEVSELTSVGSVQLEGGSTIPALTVRRADTTVE 384 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L SG + LAG+L+ Q G+P LS IP+LG F + EETE+ I AT ++V P Sbjct: 385 LASGQSFALAGMLRSSNSQTVAGVPGLSGIPLLGRAFERESTSSEETELVIIATAYVVAP 444 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 V+ L P + DA F +Y Sbjct: 445 VSAGTLQTPGQGAKML-DANTPRFGAAGYLY 474 >gi|320156053|ref|YP_004188432.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus MO6-24/O] gi|319931365|gb|ADV86229.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus MO6-24/O] Length = 462 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 110/455 (24%), Positives = 199/455 (43%), Gaps = 41/455 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 K+I + + + ++ + +++ V + D T ADV S R+ +FG VG+ +++++G + Sbjct: 22 AAKQIDLEVGQSRLIPLSQEMRSVYIVDSTIADVKTPSARSALVFGAKVGKTDLVIVGKE 81 Query: 106 GKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 G+ + + + + ++ LE L I ++ V D++ + G V + + + + L Sbjct: 82 GEAIAHYRLNVKNSGLSQLERHLETLYPSHRIALQSVGDSIAVAGTVASPEMAADILSLV 141 Query: 165 ETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVTIA 203 F ++ S V+N L I QV + + + Sbjct: 142 NNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIRMV 201 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 E+ + +++G + S P+ G +F + ++ +F ++ AL Sbjct: 202 EMAKSTSEELGIRW----QSVNPNWMLGVSPGNQFATGIDLTDPDNLIKESAFMGIIDAL 257 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + + LAEP LTA SG+ A F GG+ + ++ + V +GV L TPTVL Sbjct: 258 ASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGE--SVGVEFKSFGVGLSVTPTVL 315 Query: 324 SPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 S RI L + VS + I +N D+P R A TT+EL G + LAGLL+ + Sbjct: 316 SENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTSEE 375 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVED 438 + IP L ++P +GALFR ++ + E E+ I AT LV+P + + P DH+ Sbjct: 376 NSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRAPT 435 Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + F + + G G+ Y Sbjct: 436 RLERLLFGELE--------GHTDTPKLIGDYGYRY 462 >gi|78186537|ref|YP_374580.1| type II secretion system protein [Chlorobium luteolum DSM 273] gi|78166439|gb|ABB23537.1| type II secretion system protein [Chlorobium luteolum DSM 273] Length = 461 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 109/446 (24%), Positives = 199/446 (44%), Gaps = 51/446 (11%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + + + + ++ ++ V V +P AD ++ + +YL GK G N+IL G Sbjct: 25 VPVGESRVYRLEQPIKRVAVGNPEVADYIMLNSSELYLLGKKTGATNLILWDQKGNCTST 84 Query: 112 LDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 L + + R++ ++ L+ + +++I++ +VL G ++ A L + +L Sbjct: 85 L-LQVSRNVYPIKKLLKTALPKETDIQIFASGPALVLAGSASNSLAAESAYRLVKAYLGG 143 Query: 171 -------------------------------------SGRNQYANSSSKKVMNLLNIAGE 193 + A + ++NLL + Sbjct: 144 TVPGVNPESSLSNSGSGSAAPASMSGTQNSSYAAPVIATSASTAPAGMSGLVNLLTVRDT 203 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L+V IAEV + ++ +G + G + + G + + ++ + Sbjct: 204 QQVRLEVRIAEVSKSYIETLGLGW-----TQGVGNTQGSLMTGFVSNATLNLLLQTKSNP 258 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + + A + I+ LAEPT+ A+SGQ F GG+ T+S + GA YG Sbjct: 259 GN-RLDMDAERKEGLIKILAEPTMVAMSGQEGYFLVGGKVYTPTLS-TNGAVDYVERTYG 316 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 V L FTP VL GRI L++ EVSEP V +G +P ++ A +TV++ G +V Sbjct: 317 VGLRFTPVVLDSGRISLKVAPEVSEPLKEAVTAGTSGPLPGFKTSFASSTVQMREGENLV 376 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + GLL+D++ ++ +PLL+ IPILG+LFR++ + E TE+ + P L+K + Sbjct: 377 IGGLLRDNLTEVVRAVPLLADIPILGSLFRHTEKSSETTELMVIIRPTLIKASD-KAPEL 435 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPK 455 P D + ++ F ++ G K Sbjct: 436 PTDRFVPPSSSELFIEGKLQSSRGSK 461 >gi|260775653|ref|ZP_05884549.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] gi|260608069|gb|EEX34238.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] Length = 442 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 117/428 (27%), Positives = 188/428 (43%), Gaps = 34/428 (7%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 + + + + ++ V VS+P AD V + ++ K+ G++++I Sbjct: 18 ATTVAASEYLPMAEGDARPFATQQEIGTVFVSNPAVADYQVIDKHKVVIYSKSTGKSSLI 77 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + G +L+ I + + ++ LR ++ + V + VVL G V + Q Sbjct: 78 VFDQSGNTILSRRIQVNKSADSIQRYLRNHYPNAQVNAYYVGEQVVLSGTVSSEQVKDEI 137 Query: 161 VELSETFLSQSGRNQ---------------YANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 + L + Q V+N + + QV +KV+IAEV Sbjct: 138 YIVVGEMLEKPANRQKFELETEDESYEMKFMERREYDGVVNNIEVVVTKQVNVKVSIAEV 197 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + L+QIG + G G G FV+ FS +L +++A++ Sbjct: 198 SQKALEQIGVSYFSKGQVPG---------SGVFVNAINAFSADDIL------MMINAIDN 242 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + R LAEP L+ SG+SASF GG+ T + G +SV+ ++GV L V Sbjct: 243 ESVGRVLAEPNLSVTSGESASFLVGGELPVVT--TIDGGSSVSYKEFGVRLELMAKVKRD 300 Query: 326 GRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +I L + EVS + D+P+ + R+A TTVEL G + VL GLL + + Sbjct: 301 NKITLSLVPEVSSLDSQYENDTYDLPALKTRRARTTVELGDGQSFVLGGLLSSEDMESLS 360 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 IPL+ IPILG LFRN+ R +TE+ I AT LVKPV +S P + + Sbjct: 361 KIPLIGDIPILGTLFRNAETERNKTELIIVATVNLVKPVETSTISLPTINRTSTLKRMFS 420 Query: 444 FFNRVNKI 451 + N KI Sbjct: 421 WENDEEKI 428 >gi|254506218|ref|ZP_05118362.1| general secretion pathway protein D [Vibrio parahaemolyticus 16] gi|219551036|gb|EED28017.1| general secretion pathway protein D [Vibrio parahaemolyticus 16] Length = 431 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 117/439 (26%), Positives = 201/439 (45%), Gaps = 38/439 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++G + + ++ V +SDP AD V + +FGK VG +++ + + + Sbjct: 12 MNLGEGEAKAINTKAEIASVFISDPQIADYQVVDKNKLVIFGKKVGTVSLLAFDDNSETI 71 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 ++ +++ + + H++ ++ D +I + + + VVL G V + + L L+ Sbjct: 72 ISRKLVVNQSLIHIQQQVQIRYPDVSISIYNLGEQVVLAGKVPSEKIRDEINILVGELLN 131 Query: 170 QS---------------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + K ++N + ++ QV +K++IAEV + L+Q G Sbjct: 132 KEYEDYKIEWDLGENTYEMEFMTRRHYKGIVNNIEVSTTKQVNVKLSIAEVSQSFLEQFG 191 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 ++ SS+ GG FV + +FS ++ V+ A+ + LAE Sbjct: 192 VKYGTLDSSANF-------MGGTFVDQLINFSAADIVS------VISAIGDDAVGQVLAE 238 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L+ ISG++ASF GG+ TV G T+V ++G+ L VL +I L + Sbjct: 239 PNLSVISGETASFLVGGEIPVVTVV--DGGTNVLFKEFGIRLEMMAKVLQDDKIKLSLMP 296 Query: 335 EVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 EVS +P+ + R+A TTVEL G + VL GLL + ++ +P + +P Sbjct: 297 EVSSLDTQYQNDRYSLPALKTRRARTTVELGDGQSFVLGGLLSTEDRESLSRVPFIGDVP 356 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 ILGALFR++ R +TE+ I AT LVKPV + P + FF V Y Sbjct: 357 ILGALFRHTETVRNKTELVIVATVNLVKPVNPSQIQLPT--MKRTTTMQRFF--NVEYSY 412 Query: 453 GPKEASEVEGQNYKGAIGF 471 P AS+ + A GF Sbjct: 413 TP--ASKAWAEEVLQAGGF 429 >gi|27365651|ref|NP_761179.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6] gi|27361799|gb|AAO10706.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6] Length = 462 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 110/455 (24%), Positives = 199/455 (43%), Gaps = 41/455 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 K+I + + + ++ + +++ V + D T ADV S R+ +FG VG+ +++++G + Sbjct: 22 AAKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKTPSARSALVFGAKVGKTDLVIVGKE 81 Query: 106 GKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 G+ + + + + ++ LE L I ++ V D++ + G V + + + + L Sbjct: 82 GEAIAHYRLNVKNSGLSQLERHLETLYPSHRITLQSVGDSIAVAGTVASPEMAADILSLV 141 Query: 165 ETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVTIA 203 F ++ S V+N L I QV + + + Sbjct: 142 NNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIRMV 201 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 E+ + +++G + S P+ G +F + ++ +F ++ AL Sbjct: 202 EMAKSTSEELGIRW----QSVNPNWMLGVSPGNQFATGIDLTDPDNLIKESAFMGIIDAL 257 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + + LAEP LTA SG+ A F GG+ + ++ + V +GV L TPTVL Sbjct: 258 ASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGE--SVGVEFKSFGVGLSVTPTVL 315 Query: 324 SPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 S RI L + VS + I +N D+P R A TT+EL G + LAGLL+ + Sbjct: 316 SENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTSEE 375 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVED 438 + IP L ++P +GALFR ++ + E E+ I AT LV+P + + P DH+ Sbjct: 376 NSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRAPT 435 Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + F + + G G+ Y Sbjct: 436 RLERLLFGELE--------GHTDTPKLIGDYGYRY 462 >gi|197337022|ref|YP_002157812.1| general secretion pathway protein D [Vibrio fischeri MJ11] gi|197314274|gb|ACH63723.1| general secretion pathway protein D [Vibrio fischeri MJ11] Length = 440 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 116/402 (28%), Positives = 187/402 (46%), Gaps = 38/402 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 G I++ ++ DV V VSDP AD V + + ++GK +GQ++V++ + Sbjct: 23 AGNIINMSEGDSQVILANKDVGSVFVSDPKIADYQVIEKKKVIVYGKKIGQSSVMVFDRN 82 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G + N +++ + + ++ + D ++ V + + VVL G V T Q+ + Sbjct: 83 GHTLANKKVIVNKSLDSIKQYISVKYPDVDVDVFNIGEQVVLSGTVSTEQEKDEINNIVG 142 Query: 166 TFLSQSGR---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 L + + K ++N + +A QV +K++IAEV + L Sbjct: 143 QLLDKDDEKFTFEQDMEDQDYEIQFMERTDYKGIVNNIEVATTKQVNVKISIAEVSQSFL 202 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 + IG Q+ D G F+ FS +V+ A+ T + Sbjct: 203 QDIGIQY-------------GTDAAGVFIQPLTHFS------SSDIMSVITAIGSDTVGQ 243 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP L+ +SG+SASF GG+ T +T+V +YGV L V +I L Sbjct: 244 ILAEPNLSVVSGESASFLVGGELPVVTTV--NNSTNVMYKEYGVRLELMAKVKKDDKITL 301 Query: 331 RIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + EVS I ++ D+P+ + R+A TTVEL G + VL GLL + ++ + IP + Sbjct: 302 SLVPEVSSLDIQYENDSYDLPALKTRRARTTVELGDGQSFVLGGLLSSEDKESLQKIPFI 361 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IPILGALFR S R +TE+ I AT LVKP+ + P Sbjct: 362 GDIPILGALFRGSSTKRNKTELLIVATVNLVKPIHSSQIQLP 403 >gi|145299828|ref|YP_001142669.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp. salmonicida A449] gi|142852600|gb|ABO90921.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp. salmonicida A449] Length = 461 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 112/457 (24%), Positives = 193/457 (42%), Gaps = 38/457 (8%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ + +L V+D V++ V S + + ++G+ VG+ ++++ D Sbjct: 14 AAESLTLTPEQSTLLNFDEPVRDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTAQD 73 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G+ + + + + D+A L+ R+ S + +V+ G V + + + + E Sbjct: 74 GRTLGHYRVQVVADLAPLKQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILAMVE 133 Query: 166 TFLSQSGRNQYANSS------------------------SKKVMNLLNIAGEDQVTLKVT 201 F + V+N L +AG DQ+ + V Sbjct: 134 AFAKGIQPQGVPSGPVAPAQPQSGNQDEGAAVAGGGSGQYANVINQLRLAGSDQINISVR 193 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 I E++R +Q+G + S G G +F S G D ++ Sbjct: 194 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 249 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + + LAEP LTA SG++A+F SGG+ + + G + +G+ L TPT Sbjct: 250 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 308 Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 +L RI L + EVS E + + +P R+ TT+EL G + LAGL++ Sbjct: 309 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 368 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSV 436 Q E +P L +IP L F ++ F +E+E+ I AT LV+P + LS P DHY Sbjct: 369 RNQSSEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 428 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + FF + G E + G G+ Y Sbjct: 429 PSRFERRFFTDM----GSTERPGAQATRLFGNYGYSY 461 >gi|37680194|ref|NP_934803.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016] gi|37198941|dbj|BAC94774.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016] Length = 462 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 110/455 (24%), Positives = 199/455 (43%), Gaps = 41/455 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 K+I + + + ++ + +++ V + D T ADV S R+ +FG VG+ +++++G + Sbjct: 22 AAKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKTPSARSALVFGAKVGKTDLVIVGKE 81 Query: 106 GKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 G+ + + + + ++ LE L I ++ V D++ + G V + + + + L Sbjct: 82 GEAIAHYRLNVKNSGLSQLEHHLETLYPSHRITLQSVGDSIAVAGTVASPEMAADILSLV 141 Query: 165 ETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVTIA 203 F ++ S V+N L I QV + + + Sbjct: 142 NNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIRMV 201 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 E+ + +++G + S P+ G +F + ++ +F ++ AL Sbjct: 202 EMAKSTSEELGIRW----QSVNPNWMLGVSPGNQFATGIDLTDPDNLIKESAFMGIIDAL 257 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + + LAEP LTA SG+ A F GG+ + ++ + V +GV L TPTVL Sbjct: 258 ASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGE--SVGVEFKSFGVGLSVTPTVL 315 Query: 324 SPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 S RI L + VS + I +N D+P R A TT+EL G + LAGLL+ + Sbjct: 316 SENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTSEE 375 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVED 438 + IP L ++P +GALFR ++ + E E+ I AT LV+P + + P DH+ Sbjct: 376 NSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRAPT 435 Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + F + + G G+ Y Sbjct: 436 RLERLLFGELE--------GHTDTPKLIGDYGYRY 462 >gi|253687068|ref|YP_003016258.1| type II and III secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753646|gb|ACT11722.1| type II and III secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 478 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 133/457 (29%), Positives = 228/457 (49%), Gaps = 27/457 (5%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T +++ LF++ V + A +S I ++ + +N+ +LQ+ Sbjct: 15 TCKRLLAACLFNAVLPVTLTTMMLPATTLAAGVSTAPI--TDEVHLTVNQGRLLQLADTP 72 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 VLV+DP A + SP ++++ K+VG + + +G + + ++ E D+ L Sbjct: 73 DSVLVADPNIASFELPSPGNLFVYAKSVGVTTLYAMDENGNVINAIRLVSEHDLKALGER 132 Query: 127 LRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ---------- 175 ++R ++I++E + V++ G V T QD++R ++ + ++S S Q Sbjct: 133 MKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASSGGQGGGGGGGEKL 192 Query: 176 -YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAAD 233 ++ SS KV+N L I Q+ ++V + EV R + ++GF + + S+ SG + + Sbjct: 193 PGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMSAGSGS 252 Query: 234 FGGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFT 288 F + G FS +F +L A+ + LAEP LTA+SG++A+F Sbjct: 253 RLNLFNATTGRFSNPTDSGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGETAAFA 312 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGV 343 +GG+ ++ + S+ YGV+L TPT+LS RI L I EVSE V Sbjct: 313 AGGEVPIVLIT--NNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQLE 370 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS +P+ G LF + Sbjct: 371 GGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFESEAT 430 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 ++EETE+ I AT ++V+PV DL P + D + Sbjct: 431 SQEETELVIIATAYVVEPVNAGDLQTPGQGVKMLDSS 467 >gi|149188863|ref|ZP_01867153.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1] gi|148837283|gb|EDL54230.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1] Length = 456 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 110/406 (27%), Positives = 191/406 (47%), Gaps = 47/406 (11%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN +Q+ + + V +S+P AD + + T+ +F VGQ+ +I+ G + +L Sbjct: 34 SITLNDGQHIQLKMPIGKVFISNPAIADYKIINDNTLVVFANGVGQSRLIVYGTNNDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ D++ + L+ D+ ++V+ V + V + G+V + Q L T L + Sbjct: 94 SDRIIVDLDLSEVRRQLKFHFPDAKVKVQSVGEQVAVSGVVDSEQTRDDIYRLVATLLGR 153 Query: 171 SGRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ N + + ++ + +A QV +K+++A+V Sbjct: 154 EKIKKWDKTEKLEFKSEHMERKEPESMVFARNMTWEGILERIEVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 K +G S GSS G V D + T++ AL Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP LT +SG+SASF GG+ +S+ ++T ++G+ L T VLS Sbjct: 255 SIAEVLAEPNLTVLSGESASFLVGGEVPVIVSTSNN--VNITFKEFGIKLDLTAKVLSQD 312 Query: 327 RIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I +++ EVSE V A +P R+A TTVEL G + +L GL+ + + Sbjct: 313 KIRMQLSPEVSEVESYVEAAGVKVPQLASRRAMTTVELADGDSFILGGLMSSSDLEKMQK 372 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + +P+LGA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 373 IPFIGDVPVLGAAFRKATTQRKRTELIIVATVNLVEPMKPKDIQLP 418 >gi|88866586|gb|ABD57354.1| FlpC [Aeromonas salmonicida subsp. salmonicida A449] Length = 479 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 112/457 (24%), Positives = 193/457 (42%), Gaps = 38/457 (8%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ + +L V+D V++ V S + + ++G+ VG+ ++++ D Sbjct: 32 AAESLTLTPEQSTLLNFDEPVRDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTAQD 91 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G+ + + + + D+A L+ R+ S + +V+ G V + + + + E Sbjct: 92 GRTLGHYRVQVVADLAPLKQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILAMVE 151 Query: 166 TFLSQSGRNQYANSS------------------------SKKVMNLLNIAGEDQVTLKVT 201 F + V+N L +AG DQ+ + V Sbjct: 152 AFAKGIQPQGVPSGPVAPAQPQSGNQDEGAAVAGGGSGQYANVINQLRLAGSDQINISVR 211 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 I E++R +Q+G + S G G +F S G D ++ Sbjct: 212 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 267 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + + LAEP LTA SG++A+F SGG+ + + G + +G+ L TPT Sbjct: 268 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 326 Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 +L RI L + EVS E + + +P R+ TT+EL G + LAGL++ Sbjct: 327 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 386 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSV 436 Q E +P L +IP L F ++ F +E+E+ I AT LV+P + LS P DHY Sbjct: 387 RNQSSEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 446 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + FF + G E + G G+ Y Sbjct: 447 PSRFERRFFTDM----GSTERPGAQATRLFGNYGYSY 479 >gi|59713403|ref|YP_206178.1| general secretion pathway protein D [Vibrio fischeri ES114] gi|59481651|gb|AAW87290.1| general secretion pathway protein D [Vibrio fischeri ES114] Length = 440 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 116/402 (28%), Positives = 187/402 (46%), Gaps = 38/402 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 G I++ ++ DV V VSDP AD V + + ++GK +GQ++V++ + Sbjct: 23 AGNIINMSEGDSQVILANKDVGSVFVSDPKIADYQVIEKKKVIVYGKKIGQSSVMVFDRN 82 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G + N +++ + + ++ + D ++ V + + VVL G V T Q+ + Sbjct: 83 GHTLANKKLIVNKSLDSIKQYISVKYPDVDVDVFNIGEQVVLSGTVSTEQEKDEINNIVG 142 Query: 166 TFLSQSGR---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 L + + K ++N + +A QV +K++IAEV + L Sbjct: 143 QLLDKDDEKFTFEQDMEDQDYEIQFMERTDYKGIVNNIEVATTKQVNVKISIAEVSQSFL 202 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 + IG Q+ D G F+ FS +V+ A+ T + Sbjct: 203 QDIGIQY-------------GTDAAGVFIQPLTHFS------SSDIMSVITAIGSDTVGQ 243 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP L+ +SG+SASF GG+ T +T+V +YGV L V +I L Sbjct: 244 ILAEPNLSVVSGESASFLVGGELPVVTTV--NNSTNVMYKEYGVRLELMAKVKKDDKITL 301 Query: 331 RIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + EVS I ++ D+P+ + R+A TTVEL G + VL GLL + ++ + IP + Sbjct: 302 SLVPEVSSLDIQYENDSYDLPALKTRRARTTVELGDGQSFVLGGLLSSEDKESLQKIPFI 361 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IPILGALFR S R +TE+ I AT LVKP+ + P Sbjct: 362 GDIPILGALFRGSSTKRNKTELLIVATVNLVKPIHSSQIQLP 403 >gi|227326302|ref|ZP_03830326.1| hypothetical protein PcarcW_02904 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 479 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 129/458 (28%), Positives = 226/458 (49%), Gaps = 28/458 (6%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T +++ LF++ V + A +S + ++ + +N+ +L + Sbjct: 15 TCKRLLAAGLFNAVLPVTLTTMMLPATTLAAGVSVAPV--TDEVRLTVNQGRLLHLNALP 72 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 VLV+DP A + SP ++++ K+VG + + +G + + ++ E D+ L Sbjct: 73 DSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKALGER 132 Query: 127 LRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ---------- 175 ++R ++I++E + V++ G V T QD++R ++ + ++S S Sbjct: 133 MKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASSGGGGQGGGGGGER 192 Query: 176 --YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAA 232 ++ SS KV+N L I Q+ ++V + EV R + ++GF + + S+ SG + + Sbjct: 193 LPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTAGSG 252 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASF 287 F + G F+ +F +L A+ + LAEP LTA+SG++A+F Sbjct: 253 SRLNLFNATTGRFANPTDAGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGETAAF 312 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIG 342 +GG+ ++ + S+ YGV+L TPT+LS RI L I EVSE V Sbjct: 313 AAGGEVPIVLIT--NNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQL 370 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS +P+ G LF + Sbjct: 371 EGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFESES 430 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 ++EETE+ I AT ++V+PV DL P + D + Sbjct: 431 TSQEETELVIIATAYVVEPVNAGDLQTPGQGVKMLDSS 468 >gi|19749313|gb|AAL98683.1| Y4xJ [Sinorhizobium fredii] Length = 411 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 129/450 (28%), Positives = 195/450 (43%), Gaps = 54/450 (12%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 + AV + I +S L K + L P + V+DP AD S RT+++FG Sbjct: 9 GDEAVPRAAPNSINATLNLSSSLGKTVHL--PAPAATIFVADPPIADYQAPSNRTIFVFG 66 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 K G+ ++ + +G+ + L +++ + I L LR + D I V +L G Sbjct: 67 KKFGRTSLFALDENGEALAELHVVVTQPIGDLRAMLRDQVGDYPIHVSYTPRGAILSGTA 126 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + A ++E FL ++N + +AG QV L V +AEV R LK Sbjct: 127 PNAEVVDIAKRVTEQFLGDGAP----------IVNNIKVAGSLQVNLSVRVAEVSRSSLK 176 Query: 212 QIGFQHSITGSSSGPSKSFA--ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 +G S G G GG + D S VL AL + Sbjct: 177 ALGINLSAFGQFGNFKVGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLDALAKEHIA 236 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 LAEP LTA+SG++ASF +GG F PTVL I Sbjct: 237 SVLAEPNLTAMSGETASFLAGG-------------------------EFVPTVLDNNLIN 271 Query: 330 LRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + ++ EVSE + VN +P+ R+ADT VEL SG + V+ GL++ ++ Sbjct: 272 IHVKPEVSELSLQGAVQVNGIAVPAVSTRRADTVVELASGQSFVIGGLIRRNVNNDISAF 331 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFF 444 P L +IPILGALFR+S F +EE+E+ I TP++V+P +S P D + Sbjct: 332 PWLGRIPILGALFRSSSFQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAPA------- 384 Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 + + A + + KG +GFI + Sbjct: 385 ---LGTPPRARAAISTDAPSVKGDLGFIIE 411 >gi|197117446|ref|YP_002137873.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem] gi|197086806|gb|ACH38077.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem] Length = 451 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 118/444 (26%), Positives = 194/444 (43%), Gaps = 45/444 (10%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQA 97 + G ++ +N+ ++L + + V ++D DV + + GK +G Sbjct: 21 VEAATATAGVPTTVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGST 80 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 N+I+ + + D+ + D +E +R + +I V+ DTV+L G V Sbjct: 81 NLIVWEENNDKPTFFDVRVVGDREAIESQIRDYAPKDDISVQYAQDTVILSGKVANEMTG 140 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ- 216 ++A E+++ + S KV+N + + QV L+V +A+V R LK++G Sbjct: 141 KKAEEIAKAY-------------SAKVLNHITVDEPQQVLLQVKVAQVDRTSLKRLGLSA 187 Query: 217 ----------HSITGSSSGPSKS-------FAADFGGKFVSEGGDFSVKGVLDRFS---- 255 ++ G+ SG S++ F + G V L+ F+ Sbjct: 188 IVKGRTAEGFTNLVGAPSGTSRNTESTPTRFTSTEGNGIVGNIPGIGGFDPLNAFNVGVS 247 Query: 256 -----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VT 308 VL AL + LAEP L SG+ +F +G + Y + S+ GA++ + Sbjct: 248 YFPAGIGAVLQALSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIV 307 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 GV L F P VL G I L+I EVS + P R T VEL G + Sbjct: 308 FETVGVKLKFKPQVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGES 367 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-D 426 +VLAGLL+++ + IPLL IPILGALFR+S+ + E ++ TP +VKP Sbjct: 368 LVLAGLLQEEQIKNMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVKPTPAGVA 427 Query: 427 LSRPDDHYSVEDDAKAFFFNRVNK 450 P D + E++ + R K Sbjct: 428 TKLPTDAVTPEEEKGYDWIPRGGK 451 >gi|87312292|ref|ZP_01094390.1| putative outer membrane channel for pilus assembly CpaC [Blastopirellula marina DSM 3645] gi|87284996|gb|EAQ76932.1| putative outer membrane channel for pilus assembly CpaC [Blastopirellula marina DSM 3645] Length = 534 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 122/471 (25%), Positives = 203/471 (43%), Gaps = 27/471 (5%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 M S + ++A + AV N++ +++ + +N I + + Sbjct: 1 MYSYGVACLLIAIATPAANAQDMGAVPNVNFKVDAPNQRLEMMVNSSRIFTLDEKIPKAQ 60 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V++P + SP + + G V L DG + +DI++ D L++ L Sbjct: 61 VNNPDLLRLTPLSPNKIQVSALKPGVTQVNLWNEDG-TIHTIDIIVIGDGRELQLLLETE 119 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 +S+I+V ++ +VVL G V + R V ++E + KV+N + + Sbjct: 120 FPNSSIKVRPLASSVVLSGYVDRPEAVSRIVAMAEDY-------------YPKVINNITV 166 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSFAADFGGKFVS 240 G QV LKV + EV R L+++G + GS P+ + + Sbjct: 167 GGVQQVMLKVKVYEVSRTKLRRLGIDWAAIGSDYFISSTAANVLTPAGVLTSGARDALGA 226 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G + F L AL + + AEPTLT ISG+ ASF SGG+ + S Sbjct: 227 TGQTVQFGVLGSSTQFFGFLDALRQNNVAKLSAEPTLTTISGRPASFLSGGEVPIQVASG 286 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G TS+ YG + F P VL G + L ++ EVSEP V P +R+R DT V Sbjct: 287 -LGTTSIEYKQYGTRVDFVPIVLGNGNLKLEVRPEVSEPDYSVAINGTPGFRLRWVDTAV 345 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 E+ +G + LAGL+++ I+ G+P L+ +P +GA FR + +R E E+ I TP LV Sbjct: 346 EMKAGQSFALAGLIQEKIETETRGLPYLADLPWVGAAFRRNTDSRNEVELLIIVTPELVG 405 Query: 421 PVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 + ++ P + + D + + V P + + G Sbjct: 406 ALNPEEVPCEYPGSNTGITTDCELYGRGYVEVPACPPGGACISEPGMIGPY 456 >gi|253701800|ref|YP_003022989.1| type II and III secretion system protein [Geobacter sp. M21] gi|251776650|gb|ACT19231.1| type II and III secretion system protein [Geobacter sp. M21] Length = 451 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 116/438 (26%), Positives = 189/438 (43%), Gaps = 45/438 (10%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQA 97 I G ++ +N+ ++L + + V ++D DV + + GK +G Sbjct: 21 IEATNATAGVPTTVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGST 80 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 N+I+ + + D+ + D +E +R + + +I V+ DTVVL G V Sbjct: 81 NLIVWEENNENPTFFDVRVVGDREAIESQIRDYAPNDDISVQYAQDTVVLSGKVANEMTG 140 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ- 216 ++A E+++ + S KV+N + + QV L+V +A+V R LK++G Sbjct: 141 KKAEEIAKAY-------------SAKVLNHITVDEPQQVLLQVKVAQVDRTSLKRLGISA 187 Query: 217 ----------HSITGSSSGPSKSF-----------AADFGGKFVSEGG-----DFSVKGV 250 ++ G+ SG S A+ G G F+V Sbjct: 188 MVKGRTAEGFMNLVGAPSGTSSVTNSSATRFTSTEASGIAGSIPGLGSFDPLDAFNVGVS 247 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VT 308 VL AL + LAEP L SG+ +F +G + Y + S+ GA++ + Sbjct: 248 YFPAGIGAVLQALSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSII 307 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 GV L F P VL G I L+I EVS + P R T VEL G + Sbjct: 308 FETVGVKLKFKPQVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGES 367 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-D 426 ++LAGLL+++ + IPLL IPILGALFR+S+ + E ++ TP +VKP Sbjct: 368 LILAGLLQEEQIKTMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVKPTPAGVA 427 Query: 427 LSRPDDHYSVEDDAKAFF 444 P D + ++ + Sbjct: 428 TKLPTDAVTPAEEKGYDW 445 >gi|330830432|ref|YP_004393384.1| protein transporter, outer membrane secretin (secretin) family [Aeromonas veronii B565] gi|328805568|gb|AEB50767.1| Protein transporter, outer bacterial membrane secretin (Secretin) family [Aeromonas veronii B565] Length = 465 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 114/459 (24%), Positives = 194/459 (42%), Gaps = 38/459 (8%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + +++ + +L V D V++ V S + + ++G+ VG ++++ Sbjct: 16 AAAAESLTLTPEQSTLLNFDEPVLDAFVANSELVRVHSPSDQQLLIYGRKVGHTDLVVTA 75 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 DG+ + + + + D+A LE R+ S + +V+ G V + + + + Sbjct: 76 LDGRTLGHYRVTVVADLAPLEQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILSM 135 Query: 164 SETFLSQSGRNQYANSS------------------------SKKVMNLLNIAGEDQVTLK 199 E F A S+ V+N L +AG DQ+ + Sbjct: 136 VEGFAKGLQPQSVAQSTVMAPSPQAGNQDEGAAVAGGGSGQYANVINQLRLAGSDQINIS 195 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 V I E++R +Q+G + S G G +F S G D + Sbjct: 196 VRIVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPLERGSWTGKKDVVYINAI 251 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + AL + + LAEP LTA SG++A+F SGG+ + + G + +G+ L T Sbjct: 252 IDALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELT 310 Query: 320 PTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PT+L RI L + EVS E + + +P R+ TT+EL G + LAGL++ Sbjct: 311 PTLLDNNRISLTVSPEVSTLSRENSVTIAGVVVPGIETRRTTTTIELADGQSFALAGLVR 370 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY 434 Q E +P L +IP L F ++ F +E+E+ I AT LV+P + LS P DHY Sbjct: 371 SHRNQNNEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHY 430 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + FF + G ++ + G G+ Y Sbjct: 431 RAPSRFERLFFTDM----GSTQSPAAQTTRLFGNYGYSY 465 >gi|325108834|ref|YP_004269902.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] gi|324969102|gb|ADY59880.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] Length = 736 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 107/477 (22%), Positives = 198/477 (41%), Gaps = 53/477 (11%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 +A ++++ VE +K+ + LN+ +++ V + ++DPT D+ + G Sbjct: 58 DARIVSMPQVE----RKLELVLNRSQLVKTRSRVTRMAIADPTVIDIAPFEEDEFAIIGT 113 Query: 93 NVGQANVILIGHDGKQMLNLDILI----------ERDIAHLEMTLRRFIADSNIRVEMVS 142 +G + L + L ++ + D LE + +S + + + Sbjct: 114 AIGSTTLTLWFENDDNPLIYEVTVIDDPNVEEQLRIDYGKLERKIAILFPNSKVYLIPLH 173 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS---------------------- 180 + +V+ G + ++ R +++ Y + Sbjct: 174 EKLVVKGQAKDAAEAARILQIVRGEFLDDYGGLYGPNGGAGRGGGGGGGYDDDGIRDEDD 233 Query: 181 --SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S ++N+L + GE QV L VTIAE+ R L+++G ++ ++ F G Sbjct: 234 LYSSFIVNMLQVPGEYQVMLHVTIAELNRSQLRRMGVDFAVLFAN-------GQHFIGST 286 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 +S GG ++ G+ + +++AL + L+ P+LT +SG A F +GG+ T Sbjct: 287 IS-GGVPTLTGIFNNGDISVLINALASNGTAKILSRPSLTTLSGHPAQFLAGGEFAVPTT 345 Query: 299 SSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 G TS +G + PTV+ LRI E S+ + G +P R+ Sbjct: 346 VGVGGVQGTSTQFRGFGTSMVVVPTVVDGDLFRLRIAPEFSQINQNNSVGGIPGLDSRRV 405 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL-FRNSRFNREETEIFIAAT 415 TTVEL G TIVL GLL IPLL +IP++G L F R +E E+ + T Sbjct: 406 QTTVELREGQTIVLGGLLSRQTASEVTRIPLLGEIPLIGPLMFNTKRATEDELELLVLVT 465 Query: 416 PFLVKPVAMRDL-SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471 P +V+ + ++ P + + +D + + R G + + Y +G+ Sbjct: 466 PEIVRAMDPDEVPPMPGYYVTHPNDRELY---RYAMTEGAPDLEVYQLAPYGNKVGY 519 >gi|251791991|ref|YP_003006711.1| RcpA [Aggregatibacter aphrophilus NJ8700] gi|247533378|gb|ACS96624.1| RcpA [Aggregatibacter aphrophilus NJ8700] Length = 460 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 105/417 (25%), Positives = 188/417 (45%), Gaps = 29/417 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + S+ ++Q + + VS P+ AD + T ++ K+ G+A V G DG Sbjct: 29 AQNFSLEKGATQLVQTKEKIDTIFVSSPSVADYEILDDNTFIIYAKDEGKAEVTAFGADG 88 Query: 107 KQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + + + ++ +IA L+ ++N+ V+ V V+ G RT ++S + Sbjct: 89 RPLTSDTVNVDSVVTNIADTNKQLKTHFPNTNLSVKKVGKAYVIEGKARTQEESDEVRRI 148 Query: 164 S-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 ET L S + V++ NI Q+ +K+T+ EV + + + Sbjct: 149 VGEALGTGRKVTETKLGNESVPFLDKYSYEGVVDHSNINDTTQINVKLTVVEVNKKLSEA 208 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIR 270 +G S S GG F + GG +GVL D ++AL+ + + Sbjct: 209 MGINWSHIAGS-------GPLLGGNFSAAGGFNGTQGVLRLDAKGISAFINALDNQSNGK 261 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP ++ +SG++A GG+ + G+ S+ ++GV L + RI L Sbjct: 262 ILAEPNISMLSGETADILVGGEIPFAQ-RDKEGSPSIIYKEFGVKLAVAAKLQKNNRIRL 320 Query: 331 RIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + VS N G++P + R+A + E+ +G + ++ GL + + +PL Sbjct: 321 VLDQSVSTLAGNYNFEGIGNIPYFDTRRAKSLFEVANGESFIIGGLFSSNDVEGINKVPL 380 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 L +PILG+ FRN+ NRE+ E+ I AT +VKPV +++ PD + + FF Sbjct: 381 LGDVPILGSFFRNASTNREKKELVIVATVNVVKPVEEKNIVYPD--FEQTGTMERFF 435 >gi|153948843|ref|YP_001399594.1| type II/III secretion system protein [Yersinia pseudotuberculosis IP 31758] gi|152960338|gb|ABS47799.1| type II/III secretion system protein [Yersinia pseudotuberculosis IP 31758] Length = 439 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 109/439 (24%), Positives = 193/439 (43%), Gaps = 37/439 (8%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 K+I + + I++ ++ V VS AD + ++ ++ K G A L Sbjct: 28 NTATAKQIYLPIGGSHIIKTQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLF 87 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 + + + +L+ I +R DS I + + ++ +L G T + Sbjct: 88 NKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTITS 147 Query: 163 L-----SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 + + + + +N + V+N + + +QV +K+TI E+ +D + IG Sbjct: 148 IIGEATASKKEKEREESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDW 207 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + S++G + + S T++HA+ + LAEP L Sbjct: 208 NSIKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEPNL 248 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + +SG+ ASF GG+ VS++ SV ++G+ L+ V RI + + EVS Sbjct: 249 SVLSGEYASFLVGGEIPI--VSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVS 306 Query: 338 EPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 N PS R+RKA+TTVEL G + +L GL+ ++ + IP + +P+L Sbjct: 307 SIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLL 366 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF-FNRVNKIYG 453 GALFRN++ R ++E+ + AT LVKPV+ R + PD + + FF + Sbjct: 367 GALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFFNLTNIKDAKR 424 Query: 454 PKEASEVEGQNYKGAIGFI 472 K+A E + GFI Sbjct: 425 RKQAKE-----FLQKGGFI 438 >gi|332162954|ref|YP_004299531.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667184|gb|ADZ43828.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 410 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 115/402 (28%), Positives = 198/402 (49%), Gaps = 33/402 (8%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +++ ++ V VS AD + ++ ++ K G A IL + + IL++ Sbjct: 1 MIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDN 60 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------- 171 I +R +S+I + + D+ +L G V T + + + + Sbjct: 61 TITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIGSEKTIASNS 120 Query: 172 -----GRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 G NQY NS +V+N + + G +QV +K+TIAEV +D + IG S G+ SG Sbjct: 121 KKDSDGNNQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSG 180 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + F + KF ++G ++HA+ + R LAEP L+ +SG+SA Sbjct: 181 SFQFFKLNGSNKFNAKG-------------ISALVHAINDDSIARVLAEPNLSVLSGESA 227 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGV 343 SF GG+ V+++ +T +T +G+ L+ V + RI +++ EVS V + Sbjct: 228 SFLVGGELP--LVNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNI 285 Query: 344 NAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + GD PS+R RKA TT+EL G + +L GL+ ++ + IP + IPILGA FRN+ Sbjct: 286 DGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFRNAE 345 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 + +TE+ + AT LV+PV+ +++ P ++ + FF Sbjct: 346 TRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFF 385 >gi|117618977|ref|YP_855991.1| protein transporter, outer bacterial membrane secretin (secretin) family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560384|gb|ABK37332.1| protein transporter, outer bacterial membrane secretin (secretin) family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 465 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 113/457 (24%), Positives = 194/457 (42%), Gaps = 38/457 (8%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ + +L V D V++ V S + + ++G+ VG+ ++++ D Sbjct: 18 AAESLTLTPEQSTLLNFDEPVLDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTALD 77 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G+ + + + + D+A L+ R+ S + +V+ G V + + + + E Sbjct: 78 GRTLGHYRVQVVADLAPLKQLARQHFPQSRLSFSESGGAIVVAGEVTSPLQAHEILTMVE 137 Query: 166 TFLSQSGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVT 201 F A ++ V+N L +AG DQ+ + V Sbjct: 138 GFAKGIQPQGSALGTTAPVPPQTGSQDEGAAVAGGGSGQYAHVINQLRLAGSDQINISVR 197 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 I E++R +Q+G + S G G +F S G D ++ Sbjct: 198 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 253 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 AL + + LAEP LTA SG++A+F SGG+ + + G + +G+ L TPT Sbjct: 254 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 312 Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 +L RI L + EVS E + + +P R+ TT+EL G + LAGL++ Sbjct: 313 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 372 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSV 436 Q E +P L +IP L F ++ F +E+E+ I AT LV+P + LS P DHY Sbjct: 373 RNQSSEALPFLGEIPGLAPFFGSNGFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 432 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 + FF + G E + G G+ Y Sbjct: 433 PSRFERLFFTDM----GSTERPGAQATRLFGNYGYSY 465 >gi|51597670|ref|YP_071861.1| outer membrane secretin family protein [Yersinia pseudotuberculosis IP 32953] gi|186896808|ref|YP_001873920.1| type II and III secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|51590952|emb|CAH22610.1| putative outer membrane secretin family protein [Yersinia pseudotuberculosis IP 32953] gi|186699834|gb|ACC90463.1| type II and III secretion system protein [Yersinia pseudotuberculosis PB1/+] Length = 439 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 109/437 (24%), Positives = 194/437 (44%), Gaps = 37/437 (8%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 K+I + + I+++ ++ V VS AD + ++ ++ K G A L Sbjct: 30 ANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNK 89 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL- 163 + + + +L+ I +R DS I + + ++ +L G T + + Sbjct: 90 NHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIASIV 149 Query: 164 ----SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + +N + V+N + + +QV +K+TI E+ +D + IG + Sbjct: 150 GEATASKKEKEREESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNS 209 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 S++G + + S T++HA+ + LAEP L+ Sbjct: 210 IKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEPNLSV 250 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 +SG+ ASF GG+ VS++ SV ++G+ L+ V RI + + EVS Sbjct: 251 LSGEYASFLVGGEIPI--VSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSI 308 Query: 340 VIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 N PS R+RKA+TTVEL G + +L GL+ ++ + IP + +P+LGA Sbjct: 309 DKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGA 368 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF-FNRVNKIYGPK 455 LFRN++ R ++E+ + AT LVKPV+ R + PD + + FF + K Sbjct: 369 LFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFFNLTNIKDAKRRK 426 Query: 456 EASEVEGQNYKGAIGFI 472 +A E + GFI Sbjct: 427 QAKE-----FLQKGGFI 438 >gi|56477528|ref|YP_159117.1| outer membrane channel protein [Aromatoleum aromaticum EbN1] gi|56313571|emb|CAI08216.1| probable outer membrane channel protein,probably involved in pilus assembly [Aromatoleum aromaticum EbN1] Length = 566 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 135/523 (25%), Positives = 226/523 (43%), Gaps = 90/523 (17%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA---- 77 + + P + A VEI ++I + K +++ V V +L+ +P A Sbjct: 35 TSSATPRVAVATTNGSPCGRVEIAP--MVTIPVGKSSVIRPEVPVTRILLGNPDNAQAAR 92 Query: 78 ---------------------------DVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 DV++ SP +YL GK+VG NV+L+ G Sbjct: 93 PSAEPAKDDKGGQQAKQSDGRPGVAQVDVLLLSPNEIYLLGKSVGSTNVVLVDRSGGC-T 151 Query: 111 NLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 LD+ + D+ ++ L + D I+V D++VL G V RAVE++ ++ Sbjct: 152 ALDVTVAMDVTSVQGALTALLPDETGIKVSSAYDSLVLTGTVSDATKVDRAVEIASAYVR 211 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----------- 218 + N + +V+N+L++ QV L+V +AEV + ++ + G S Sbjct: 212 DG--DGGENGRNARVLNMLSVGAPQQVMLEVKVAEVSKAVMDRFGIDFSRAYAAGDGTMI 269 Query: 219 --ITGSSSG-------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------- 260 ++G G S + A GG V + S + + + Sbjct: 270 RFLSGVFGGKSPVGGQVSGTVGARVGGGIVDSISNASGTSAITAPIGDATIGGDATKVPL 329 Query: 261 -----------HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT- 308 A + ++ LAEPT+ AISGQ SF +GG+ + G +VT Sbjct: 330 ISGSNSTLIGVDAQKSDGLVKILAEPTVMAISGQEGSFLAGGKIFIPVSQNDGGTRTVTL 389 Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDM-PSYRVRKADT 358 ++GV + FTPTVL GRI L ++ EVSE GVN + PS+ R+A T Sbjct: 390 EEKEFGVSVKFTPTVLEGGRINLAVRPEVSELNREGVGLTAPGVNGLAILPSFTTRRAFT 449 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TV+L G + + GL+K++ + P L ++P++GALFR++ F + +E+ TP L Sbjct: 450 TVQLRDGQSFAIGGLIKNNTTTNIKAFPFLGELPVIGALFRSTEFQTDRSELVFVITPRL 509 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 VKP+ D + P D+Y + + ++ GP A + Sbjct: 510 VKPL-PEDYALPTDNYVEPSRSDVIWRGKLEGK-GPAPADHPD 550 >gi|197106489|ref|YP_002131866.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium zucineum HLK1] gi|196479909|gb|ACG79437.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium zucineum HLK1] Length = 438 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 103/380 (27%), Positives = 176/380 (46%), Gaps = 20/380 (5%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E + I + +K + ++ ++VS P A V S R+ Y+ G G N+++ Sbjct: 33 EPAPRRSIHVPRDKSLSFRLAQPAARIVVSQPEIAKVTATSDRSFYVQGLEFGSTNMLVY 92 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G G+ + LDI + D L+ L + +RV + + ++L G V +A Sbjct: 93 GPGGRLLEVLDIRVGYDAEGLQQDLAAAFPNEPLRVRNLGEALMLTGEVTDTGVQYKAEA 152 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 +++ + + +++ +++ QV L+V + E R L+ IG + +I + Sbjct: 153 IAQRY------------APDGLISRVSVRASQQVVLEVRVLEATRSALQDIGVEGAIGNN 200 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S + +F G G + G + +L ALE +RTLA P L AI G Sbjct: 201 S--WAVAFGNGLIGA-SPAAGALGISGGWGDTRIDLMLTALEEKGVVRTLARPNLVAIPG 257 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Q A+F +GG++ Y V S+ YGV L FTP V G I L ++ EVS+ Sbjct: 258 QKATFHAGGEYPYP-VPQRDDLISLEFRKYGVELTFTPVVQDNGLIRLDVEPEVSQLDFT 316 Query: 343 ----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 V +P VR+ TTVEL G ++ + GL + + +P + +P+LG+LF Sbjct: 317 NSLRVQGFTVPGLIVRRTHTTVELKPGESLAIGGLFQREYTNALRQVPGIGDVPVLGSLF 376 Query: 399 RNSRFNREETEIFIAATPFL 418 R++R+ + ETE+ + TP Sbjct: 377 RSARWKKAETELVVIVTPKF 396 >gi|227114876|ref|ZP_03828532.1| hypothetical protein PcarbP_18025 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 479 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 128/458 (27%), Positives = 227/458 (49%), Gaps = 28/458 (6%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 T +++ LF++ V + A +S + ++ + +++ +LQ+ Sbjct: 15 TCKRLLAAGLFNAVLPVTLTTMMLPATTLAAGVSVAPV--TDEVHLTVHQGRLLQLNELP 72 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 VLV+DP A + SP ++++ K+VG + + +G + + ++ E D+ L Sbjct: 73 DSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKALGER 132 Query: 127 LRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------------GR 173 ++R ++I++E + V++ G V T QD++R ++ +T++ S R Sbjct: 133 MKREFPGADIQLEPSIPSGVIVRGSVDTPQDAKRVIDSIQTYIKSSVGGGQGGGGGGGER 192 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAA 232 ++ +S V+N L I Q+ ++V + EV R + ++GF + + S+ SG + + Sbjct: 193 LPGSSETSGNVVNQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTAGSG 252 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASF 287 F + G F+ +F +L A+ + LAEP LTA+SG++A+F Sbjct: 253 SRLNLFNATTGRFANPTDAGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGETAAF 312 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIG 342 +GG+ ++ + S+ YGV+L TPT+LS RI L I EVSE V Sbjct: 313 AAGGEVPIVLIT--NNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQL 370 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +P+ VR+ADTTVEL SG + LAG+L+ Q G+P LS +P+ G LF + Sbjct: 371 EGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFESEA 430 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 ++EETE+ I AT ++V+PV DL P + D + Sbjct: 431 TSQEETELVIIATAYVVEPVNAGDLQTPGQGVKMLDSS 468 >gi|227820510|ref|YP_002824481.1| type II and III secretion system protein RhcC2 [Sinorhizobium fredii NGR234] gi|227339509|gb|ACP23728.1| type II and III secretion system protein RhcC2 [Sinorhizobium fredii NGR234] Length = 447 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 117/424 (27%), Positives = 199/424 (46%), Gaps = 20/424 (4%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 +FL +A + A+A V V+ G+ + + + + IL+ V+ V ++D Sbjct: 15 VFLLILLTVLAVHCALPSASAQV----KVDAINGQVLELTVGEGTILRFDEPVESVFLAD 70 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 ADV V SP +Y++ G N+I + D + + + + E + Sbjct: 71 TAIADVRVVSPGVVYIYATKTGDTNLIALSADQMTRGTVQVRVSGNPRAAEQSALALQPT 130 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 + + + + V G R + ++ + +++ ++ + +N IAG Sbjct: 131 TRVDISLFGGQYVGTGQTRNVGEAMDMESVLQSY----------STPDRPALNNTTIAGS 180 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +QV ++V AEV R+ L + G S+ +S S G + G ++ D Sbjct: 181 NQVNIRVRFAEVARNELTRFGIDWSLFVNSGSFSFGIVRTGGASNEDDTG-IAIGARGDH 239 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + +L AL+ + LAEP +TA++GQ+ASF +GG+ V + G + +G Sbjct: 240 VNVNVLLDALQANGILTILAEPNITAVTGQTASFLAGGEIPVP-VPAGDGQIGIEYKQFG 298 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIV 369 V L FTPT+L RI L+++ EVS +PS R+R+ADT VE+ SG T Sbjct: 299 VSLQFTPTLLPNNRIALQVRPEVSSVSQDSVVSISGLVVPSLRIRRADTAVEVGSGQTFA 358 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 +AGL + Q P++ +PILG LF++ RF R ETE+ I TP+LV P + R++ Sbjct: 359 IAGLFQRQESQTLNKTPVVGDVPILGELFKSKRFQRNETELVILITPYLVTPTSERNMKT 418 Query: 430 PDDH 433 P D Sbjct: 419 PLDS 422 >gi|170022934|ref|YP_001719439.1| type II and III secretion system protein [Yersinia pseudotuberculosis YPIII] gi|169749468|gb|ACA66986.1| type II and III secretion system protein [Yersinia pseudotuberculosis YPIII] Length = 423 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 107/436 (24%), Positives = 195/436 (44%), Gaps = 35/436 (8%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 K+I + + I+++ ++ V VS AD + ++ ++ K G A L Sbjct: 14 ANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNK 73 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL- 163 + + + +L+ I +R DS I + + ++ +L G T + + Sbjct: 74 NHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIANIV 133 Query: 164 ----SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + ++ + V+N + + +QV +K+TI E+ +D + IG + Sbjct: 134 GEATASKKEKEREEHYQSSPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNS 193 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 S++G + + S T++HA+ + LAEP L+ Sbjct: 194 IKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEPNLSV 234 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 +SG+ ASF GG+ VS++ SV ++G+ L+ V RI + + EVS Sbjct: 235 LSGEYASFLVGGEIPI--VSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSI 292 Query: 340 VIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 N PS R+RKA+TTVEL G + +L GL+ ++ + IP + +P+LGA Sbjct: 293 DKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGA 352 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 LFRN++ R ++E+ + AT LVKPV+ R + PD + + FF + I K Sbjct: 353 LFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTIERFF--NLTNIKDAKR 408 Query: 457 ASEVEGQNYKGAIGFI 472 + +++ GFI Sbjct: 409 RKQ--AKDFLQKGGFI 422 >gi|148259497|ref|YP_001233624.1| type II and III secretion system protein [Acidiphilium cryptum JF-5] gi|146401178|gb|ABQ29705.1| type II and III secretion system protein [Acidiphilium cryptum JF-5] Length = 491 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 125/466 (26%), Positives = 198/466 (42%), Gaps = 37/466 (7%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 P + A + E + + ++I ++ + +V V+DP V S T+ Sbjct: 44 PAAASPARHATMRPAEAARARGLTIEQGSGRLITLKGSAANVFVADPGVVAVRPASAHTL 103 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDI---AHLEMTLRRFIADSNIRVEMVSDT 144 ++FG G V + G + L + + A + R + + + ++ Sbjct: 104 FVFGTAPGFTTVAVTDAQGHAVATLHVAVTPKTYPAAAIRAGATRSAPGARLSISSAANG 163 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 VV+ G V T + ++ + + KV+N + QV LKV IA+ Sbjct: 164 VVVRGNVPTPVQDYQIMQQAHLIAG----------TGAKVVNQTEVRLPQQVALKVRIAQ 213 Query: 205 VRRDILKQIGFQHSITGSS-------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 + R I +Q+G G+ G S + G ++ + + + Sbjct: 214 MSRTITQQLGINWQSAGNGISVGKFLFGFSALDVLNGSSPATPAAGSYNAGLSVGGGAID 273 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 +VL AL LAEPTLTA+SGQSASF GG V G +V +GV L Sbjct: 274 SVLDALNSDNLAHILAEPTLTALSGQSASFIDGGSFPVP-VPGQNGQVTVQYKKFGVQLK 332 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV--------NAGDMPSYRVRKADTTVELPSGGTIV 369 F P VL G I L +Q VS P + +PS + A TTV + SG T+ Sbjct: 333 FRPVVLDNGSIILHVQPTVSSPTTQNAFQIAVAGTSIVVPSLSTQSASTTVVIGSGQTLA 392 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLS 428 +AGLL + Q + +P L +P+LGA FR+ +NR+E E+ I TP+LVKPV L Sbjct: 393 IAGLLSNSSNQTDKSVPGLGDMPVLGAAFRDDNYNRQEQELVILVTPYLVKPVNNAGQLM 452 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 PD+ +S + + +R + G + + GQ GFI + Sbjct: 453 TPDEGWSPPNQIQRIVLHRDSG--GARREIVLPGQA-----GFILR 491 >gi|238782881|ref|ZP_04626910.1| Type II/III secretion system protein [Yersinia bercovieri ATCC 43970] gi|238716304|gb|EEQ08287.1| Type II/III secretion system protein [Yersinia bercovieri ATCC 43970] Length = 426 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 111/426 (26%), Positives = 196/426 (46%), Gaps = 30/426 (7%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V K + I + I++ ++ V VS AD + + ++ ++ K+ G +IL Sbjct: 14 VNKANAKSVYISPGESYIIKTEAEIDTVFVSSAAVADYELVNKNSIIVYAKSEGTTEIIL 73 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + + IL+ I + DSNI ++ + D+ +L G+V + ++ Sbjct: 74 FDDKHQVLAKKTILVNNIINAANKRVLIEYPDSNIDIDKIGDSYILTGIVESEEEKDTLA 133 Query: 162 ELSETFLSQ-----SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + + S R + ++N L + +QV +K+TIAEV +D + +G Sbjct: 134 TIVGEAIGSQKEKTSERQYLSTPDYAHIVNKLKLPQANQVNVKLTIAEVTKDFTENVGVD 193 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 S G + G + + G T++HA+ + R LAEP Sbjct: 194 WSTMGDAIGSFQFVKFNANG-------------------ISTLVHAINDESIARVLAEPN 234 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L+ +SG+SASF GG+ S++ + +VT ++G+ L+ V RI + + EV Sbjct: 235 LSVLSGESASFLVGGEIPI--ASNTENSQTVTYKEFGIKLNIGAKVNEKKRIRILLNEEV 292 Query: 337 SEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 S + PS + RKA TT+EL G + +L GL+ + ++ + IP + IPI Sbjct: 293 SSIGKSFSMEGGDSYPSLKTRKAATTLELGDGESFILGGLISNSERESLKKIPFIGDIPI 352 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LGALFRN++ + +TE+ + AT LVKPV+ +++ P D + F F + +I Sbjct: 353 LGALFRNAQTEQSQTELVVIATVNLVKPVSRKEIELP-DFMHTSTLERLFNFTHIMEIKR 411 Query: 454 PKEASE 459 + A E Sbjct: 412 ERMAKE 417 >gi|261251281|ref|ZP_05943855.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] gi|260938154|gb|EEX94142.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] Length = 441 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 113/442 (25%), Positives = 195/442 (44%), Gaps = 43/442 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +S+ + + + V V++ AD + + ++G G +VI+ Sbjct: 22 ASQLMSLDQGAAKTINLKRQIATVFVANQQIADYKIIDDNKVVVYGVGQGSTSVIVYDRG 81 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G ++ N ++++ + + L+ T+ D N+ V V D VVL G+V + + Q+ L Sbjct: 82 GNEIYNAELVVNQSLRLLKQTIIARFPDENVVVSNVGDQVVLDGIVSSEEVKQKVYRLVG 141 Query: 166 TFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L + R + + + +V+N L + +Q+ +K+T+AEV Sbjct: 142 EMLKKERRRHTYELRDADGEEYDELDYTSRFTYDQVINHLKVLTTEQINVKLTVAEVSSS 201 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G +S +G GKFV++ DF+ + ++ V+ A Sbjct: 202 FLSELGVSYSDSGEP------------GKFVNKLLDFTAQDIVS------VISASGDDKI 243 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + LAEP L+ ISG+ ASF +GG+ S++ +YGV L V I Sbjct: 244 GQVLAEPNLSVISGEQASFLAGGEIPIAV--RDEDGISISYKEYGVKLAMVAKVTDSENI 301 Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS +P+ R R+A TTV L G + VLAGLL + ++ Sbjct: 302 RLTLIPEVSSIDESNKTSTGLISVPTLRTRRAQTTVHLKDGQSFVLAGLLTSEEREALTK 361 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP L IPILGALF ++ NR +TE+ I AT LV PV + P + D + Sbjct: 362 IPFLGDIPILGALFSHTTTNRSKTELIIVATVNLVDPVESEQVKLP--SFKRTSDIERLL 419 Query: 445 FNRVNKIYGPKEASEVEGQNYK 466 ++++ P+ +E + Sbjct: 420 RIDLSELNEPELEGTIEQGGFN 441 >gi|238897548|ref|YP_002923227.1| putative tight adherance operon protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465305|gb|ACQ67079.1| putative tight adherance operon protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 459 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 111/498 (22%), Positives = 210/498 (42%), Gaps = 73/498 (14%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 + QR + IF F + P A + + + ++++ Sbjct: 6 FYQRCIKLIFFIFGFFTLPGSA------------------NAANTGDLFMSEGESLVIKK 47 Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 ++ V VS+P AD + T+ ++ K G++ + + ++++ I Sbjct: 48 KQNIDTVFVSNPAVADYKIVDHNTVIIYAKAEGKSEFTFFEPNQNISYHATVMVDNIIKV 107 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-------- 174 + +R +S +++E + + +L GM T + V + + N Sbjct: 108 VSDKIRMLYPESQVQIEKIGKSYLLTGMAPTEEVRDNIVRMVGESIQSPKSNDKDTVSVR 167 Query: 175 ------------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 N ++++N + + +QV +K++I EV ++ IGF+ Sbjct: 168 LDISDKGDASETTENVNSSLTNKVYERLINQIQLPVSNQVNVKLSIVEVSKEFKDNIGFE 227 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 + G+ S +F AD +++AL+ + R LAEP Sbjct: 228 WANLGTFSFHKFNFTAD---------------------RITHLVNALQDDSIARVLAEPN 266 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L+ +SG+SASF GG+ Y ++ S+ ++G+ L T V R+ + + E+ Sbjct: 267 LSVLSGESASFLVGGEIPYVKDRDASNRASIDFKEFGIKLSVTAKVNENKRVKVMLSEEI 326 Query: 337 SEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 S + A MPS + R+A+TTVEL G + VL GL+ + Q+ + +P + IPIL Sbjct: 327 SSVIGNTKAEEFTMPSLKKRRANTTVELADGESFVLGGLMNQEEQEALQKVPFIGDIPIL 386 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 G+ FR+++ N E+ + AT LVKP+ ++++ P D A+ + + I Sbjct: 387 GSFFRHTKTNNRSIELIVVATVNLVKPIPSKEITLP-DFMKTSSIARFLNLSVIKNISQK 445 Query: 455 KEASEVEGQNYKGAIGFI 472 KEA + + G GFI Sbjct: 446 KEA-----EAFLGKGGFI 458 >gi|87199101|ref|YP_496358.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87134782|gb|ABD25524.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 539 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 124/445 (27%), Positives = 209/445 (46%), Gaps = 55/445 (12%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + ++I + + ++ VP + DV V+D ADV V S +Y+FGK G+ + Sbjct: 48 TSPARTVTISIGRGELVTVPGRMADVFVADERVADVQVKSTNQLYVFGKAGGETTIYASN 107 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 G + + ++ + ++ ++ L + ++ I V +++TV+L G V +D+ A L Sbjct: 108 AKGDVVWSANVRVGNNLDSIDQMLHLAMPEARINVATMNNTVLLTGTVAAPEDAAEAERL 167 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + F+ + V++ L +A QV+L V AEV R +++ +G + + Sbjct: 168 VKAFVGEKT----------NVISRLKMATPLQVSLHVKFAEVSRSLVRTLGVNLTTIDGT 217 Query: 224 SG----------------------------------------PSKSFAADFGGKFVSEGG 243 G + A S G Sbjct: 218 GGIKFGIGQGSTTGSVATNRNLPFGVGTSSTSGYILDPTGATSNYVSATGTSVAASSSGT 277 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + G L L A E + TL+EP LTAISG++A F +GG++ VS G Sbjct: 278 TIAGMGKLLGLDLLAALDAGETIGLVTTLSEPNLTAISGETAEFLAGGEYPIP-VSQGLG 336 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTT 359 TS+ YGV L +TPTVL+ GRI +R++ E SE +++ ++P+ VR+A+TT Sbjct: 337 TTSIEYKKYGVSLAYTPTVLANGRISIRVRPEASELSSTGALKLDSVEIPALTVRRAETT 396 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VEL SG + ++AGLL++ Q +P IPILG+LFR++ + + ETE+ I TP+LV Sbjct: 397 VELGSGQSFMIAGLLQNGAQNALTKMPGAGDIPILGSLFRSTSYKKGETELVIVVTPYLV 456 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFF 444 PV D+ P D + ++ + Sbjct: 457 NPVNANDIKLPTDGFQSPNEIQRLL 481 >gi|323495637|ref|ZP_08100708.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp pilus assembly [Vibrio sinaloensis DSM 21326] gi|323319272|gb|EGA72212.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp pilus assembly [Vibrio sinaloensis DSM 21326] Length = 440 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 106/426 (24%), Positives = 185/426 (43%), Gaps = 40/426 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++G + + ++ V +S+P AD V + +FGK VG +++ + + Sbjct: 25 VNLGEGEAKAITTKQEIASVFISNPEIADYQVVDKNKLVVFGKKVGSVSLLAFDDNSNTI 84 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 ++ +++ + + H++ ++ + +I + + + VVL G V + + L L Sbjct: 85 VSRKLVVNKSLIHIQQQIQLRYPNISISLYNLEEQVVLAGKVPSEKIRDEINILVGELLE 144 Query: 170 QS---------------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 + ++N + +A QV +K++IAEV + L++ G Sbjct: 145 KEYEDHKIEWKIGTETYEMEFMTRRHYLGIVNNIEVATTKQVNVKLSIAEVSQSFLEEFG 204 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 Q+ +G +G +F +V+ AL T + LAE Sbjct: 205 VQYGSSGQGAGTFVDQLVNFSAS-----------------DIVSVITALGDDTVGQVLAE 247 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L+ ISG+SA F GG+ T+ G T+V ++G+ L VL +I L + Sbjct: 248 PNLSVISGESAHFLVGGELPVVTI--IDGGTNVLYKEFGIRLEMMAKVLEDDKIKLSLLP 305 Query: 335 EVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 EVS +P+ + R+A TTVEL G + VL GLL + ++ +P + +P Sbjct: 306 EVSSIDSQYQNERYSLPALKTRRARTTVELGDGQSFVLGGLLSTEDRESLRRVPFIGDVP 365 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 ILGALFR+S R TE+ I AT LV PV + P + FF V+ Y Sbjct: 366 ILGALFRHSETVRNRTELVIVATVNLVNPVNPSQIQLPT--MKRTTTMQRFF--NVDYSY 421 Query: 453 GPKEAS 458 P + Sbjct: 422 TPASKT 427 >gi|318604223|emb|CBY25721.1| type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia enterocolitica subsp. palearctica Y11] Length = 410 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 114/402 (28%), Positives = 197/402 (49%), Gaps = 33/402 (8%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +++ ++ V VS AD + ++ ++ K G A IL + + IL++ Sbjct: 1 MIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDN 60 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------- 171 I +R +S+I + + D+ +L G V T + + + + Sbjct: 61 TITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIGSEKTIASNS 120 Query: 172 -----GRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 G NQY NS +V+N + + G +QV +K+TIAEV +D + IG S G+ SG Sbjct: 121 KKDSDGNNQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSG 180 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + F + KF ++G ++HA+ + R LAEP L+ +SG+SA Sbjct: 181 SFQFFKLNGSNKFNAKG-------------ISALVHAINDGSIARVLAEPNLSVLSGESA 227 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGV 343 SF GG+ V+++ +T +T +G+ L+ V + RI +++ EVS V + Sbjct: 228 SFLVGGELP--LVNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNI 285 Query: 344 NAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + GD PS+R RKA TT+EL G + +L GL+ ++ + IP + IPILGA F N+ Sbjct: 286 DGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFSNAE 345 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 + +TE+ + AT LV+PV+ +++ P ++ + FF Sbjct: 346 TRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFF 385 >gi|209809170|ref|YP_002264708.1| type II/III secretion system protein [Aliivibrio salmonicida LFI1238] gi|208010732|emb|CAQ81123.1| type II/III secretion system protein [Aliivibrio salmonicida LFI1238] Length = 445 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 116/398 (29%), Positives = 192/398 (48%), Gaps = 36/398 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I++ + V D+ V +SDP AD V R + ++GK++G ++V++ G G + Sbjct: 30 INMSEGGAKTISVEQDISSVFLSDPKIADYQVIDKRKIVIYGKSIGSSSVLIFGEKGNTL 89 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N I++ + +A ++ + D+ + + V + VVL+G V T Q+ + L Sbjct: 90 SNKKIMVNKSLATIQQYISVKYPDTAVDIFNVGEQVVLNGTVSTEQEKDEINGIVGELLE 149 Query: 170 QSGRNQYANS---------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 +S ++ + V+N + +A QV +K++IAEV + L+QIG Sbjct: 150 KSRKDFQFEQDMEDQDYEIQFMERHEYEGVVNNIVVATTKQVNVKISIAEVSQSFLEQIG 209 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 Q+ + A G FV FS +V+ A+ + + LAE Sbjct: 210 IQYGTS-----------ASVPGVFVQPLTSFS------SSDIMSVITAIGNDSVGQILAE 252 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L+ ISG+SASF GG+ T +T+V ++GV L V +I L + Sbjct: 253 PNLSVISGESASFLVGGELPVVTTV--NNSTNVVYKEFGVRLDLMAKVKKDDKITLSLVP 310 Query: 335 EVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 EVS ++ ++P+ + R+A TTVEL G + VL GLL + ++ + +P + IP Sbjct: 311 EVSSLDTQYENDSYNLPALKTRRARTTVELGDGQSFVLGGLLNSEDKESLQKVPFIGDIP 370 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 ILGALFRNS R +TE+ I AT LV+P+ + P Sbjct: 371 ILGALFRNSVTQRNKTELIIVATVNLVQPIHPSQIQLP 408 >gi|283787693|ref|YP_003367558.1| tight adherence secretin RcpA [Citrobacter rodentium ICC168] gi|282951147|emb|CBG90838.1| putative tight adherence secretin RcpA [Citrobacter rodentium ICC168] Length = 482 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 123/476 (25%), Positives = 210/476 (44%), Gaps = 53/476 (11%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 R TM+S L ++ LP A + + + Sbjct: 8 SRHVLTMLSHLLLTAVLLSFSLPAAAGA-----------------LYMKHGQSRNFHFTG 50 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 D+ + +SDP AD V + + + ++ KN G ++I+ G + +L I ++ ++ + Sbjct: 51 DLDTIFISDPRVADYKVVNNKNIIVYAKNTGTTDLIVYGRNNTVLLKHSISVDPFLSDIN 110 Query: 125 MTLRRFIADSNIRVE------MVSDTVV--LHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 + R ++I V +D VV ++G V + +L + ++ SG + Sbjct: 111 QRVARLFPGNSIEVTRFMGGATAADKVVYIINGSVTDEESMDAIYQLVGSIVNSSGGEEK 170 Query: 177 ANSSSKK-------------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 N S+ K V+N + + +QV + +T+ EV + +G Sbjct: 171 DNKSANKRVVDSKINTDLIEKKKYANVINKMQLVASNQVNVHLTVVEVSKTFTDALGIDW 230 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 S SS + + + G F G KG D + TV++A++ + R +A+P L Sbjct: 231 SSLTLSSIVNGGASINNPGTFNLLG----FKGGFDAKNISTVINAIQNDSVARIMAQPNL 286 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 T +SG++A F GG+ + +S T+VT +YG+ L V +I L + E+S Sbjct: 287 TVLSGETADFLVGGEIPILSKNSDNEGTTVTYKEYGIKLSIAAKVEKKSKIKLSLSNEIS 346 Query: 338 EPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 NA +P+ R++ +T+EL G + + GLL + + +P + IPILG Sbjct: 347 SISGAYSFNAYSIPTLTTRRSSSTIELADGDSFAIGGLLTEKDYETLGKVPFIGDIPILG 406 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNK 450 AL RNS RE+TE+ I AT LVKPVA RD+ P Y+ + K FF V+K Sbjct: 407 ALARNSNTQREKTELVIFATVNLVKPVASNRDIVLP--EYNKTSNNKLFFNVGVDK 460 >gi|293391332|ref|ZP_06635666.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter actinomycetemcomitans D7S-1] gi|32452623|gb|AAP43985.1| RcpA [Aggregatibacter actinomycetemcomitans] gi|290951866|gb|EFE01985.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 460 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 102/427 (23%), Positives = 184/427 (43%), Gaps = 25/427 (5%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV+ + S+ ++Q + + VS P AD + + ++ K Sbjct: 17 AVLGAMSSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNSFIIYAKEE 76 Query: 95 GQANVILIGHDGKQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G+ V G DG+ + + + ++ IA L+ ++N+ V+ V V+ G Sbjct: 77 GRTEVTAFGVDGRPLTSDTVNVDSVVTSIADTNKQLKSHFPNTNLSVKKVGKAYVIEGKA 136 Query: 152 RTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 R+ ++S + ET L + V++ NIA Q+ +K+ Sbjct: 137 RSQEESDEVRRIVGEALGNGRKITETKLGEDALPFLDKYHYDGVVDNANIADTTQINVKL 196 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 ++ EV + + + +G S SGP FGG F G LD + Sbjct: 197 SVVEVNKKLSEAMGINWSHVAG-SGPLLGGNFGFGGGFNGNQGVL----RLDAKGISAFI 251 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 +AL+ + + LAEP ++ +SG++A GG+ + G+ ++ ++G+ L Sbjct: 252 NALDNQSNGKVLAEPNISMLSGETADILVGGEIPFAQ-RDKDGSPTIIYKEFGIKLAVAA 310 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + RI L + VS N G++P + RKA + E+ +G + ++ GL + Sbjct: 311 KLQKNDRIRLALDQSVSTIAGNYNFEGVGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + +PLL IPILG+ FRN+ R++ E+ I AT +VKPV +D+ PD + Sbjct: 371 DLEGINKVPLLGDIPILGSFFRNATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKT 428 Query: 438 DDAKAFF 444 + FF Sbjct: 429 GTMERFF 435 >gi|121534343|ref|ZP_01666167.1| type II and III secretion system protein [Thermosinus carboxydivorans Nor1] gi|121307113|gb|EAX48031.1| type II and III secretion system protein [Thermosinus carboxydivorans Nor1] Length = 408 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 105/397 (26%), Positives = 180/397 (45%), Gaps = 30/397 (7%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ +N+ +L VQ V V++P ADV+V S + + GK G + + G+ Sbjct: 29 LTVAVNQSRVLGFSG-VQRVAVANPEIADVLVVSGTEVLVVGKAPGLTTMHVWTEAGR-- 85 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 ++ + D A + ++ + IRV V+ TV+L G V T Q RA +L+ + Sbjct: 86 ATYEVEVGVDDAKVAGEIKSILGYDGIRVSKVNRTVILEGAVDTQQQKARAEKLAAVY-- 143 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 KV++LL + QV ++ + E+ R +K++G + + + G Sbjct: 144 -----------GDKVVSLLEVLRPVQVKIEAKVIEINRQKIKELGIKWGNSADTPGTFIF 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + K GD L AL ++ A + L++P + +SG AS Sbjct: 193 GQSALNSKVGDVFGDLG-----GYADINAQLSALVKSGAAKVLSQPNVVTLSGDKASIMI 247 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--- 346 GGQ V+ ++ DYG+ L P V G I R++ EVS Sbjct: 248 GGQIPVP-VAQDNNKITIEWKDYGIKLDIAPEVNGDGLIQSRVKAEVSSLDYNSANSIKL 306 Query: 347 ----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++P R+RKA+T + L SG T+ + GL+ + + +P+L +P+LG LFR++ Sbjct: 307 GAGMEIPPVRLRKAETAIALSSGQTMAIGGLIATETSKDVVKVPMLGDLPVLGHLFRSTS 366 Query: 403 FNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVED 438 F R ETE+ + TP LV P + SR ++ E+ Sbjct: 367 FRRGETELLVLITPSLVNPGEYLPATSREMKEFAQEN 403 >gi|317491683|ref|ZP_07950118.1| type II and III secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920117|gb|EFV41441.1| type II and III secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 467 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 113/451 (25%), Positives = 208/451 (46%), Gaps = 46/451 (10%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ + + ++QV ++ + +S P AD + R + ++ K+ G+ ++I + Sbjct: 38 RAQELYMDAGESQVIQVNGNIDTIFISAPKVADYEIIGERGVMVYAKSEGKTDLIAFDKN 97 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G Q++ ++++ ++ L+ + + DS I ++ + T +L G V T +D R ++ Sbjct: 98 GDQLVKTTLVVDPILSSLQKKVSSLVPDSQITLQKMGKTYILSGSVATEEDRDRVYQIVG 157 Query: 166 TFLSQSGRN---------------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 + + ++V+N L + +QV +K+++ E Sbjct: 158 EGVGATRTTNKKEVANTNGGSGGNGENSNSWLDEVVYQEVINQLKLPMTNQVNVKLSVVE 217 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V + +G S G G F + + +++HA+ Sbjct: 218 VTKTFSDNVGIDWGTISGSGGNIT-------------PGTFRFV-KFNADTLSSLVHAIS 263 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + R LAEP L+ +SG+SA F GG+ T SS ++V D+G+ L+ V S Sbjct: 264 NDSVARVLAEPNLSVLSGESAEFLVGGEVPVVT--SSANGSNVQYKDFGIKLNVGAKVSS 321 Query: 325 PGRIGLRIQTEVSEP--VIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI + + EVS NAGD P+++ R+A TTVEL G + +L GL+ ++ ++ Sbjct: 322 NKRIRVTLGEEVSNVDSTYSTNAGDSFPAFQTRRAKTTVELADGESFLLGGLISNNEREE 381 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +P + +PILGALFRN++ R E+ + AT LVKPV MRD+ P D ++ Sbjct: 382 LSRLPFIGDVPILGALFRNAKTERSRGELVVVATVNLVKPVTMRDIVMP-DFQRTSTLSR 440 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 F+ ++ + K A E Q GFI Sbjct: 441 FLNFDAISNLRDRKLAQEFVEQG-----GFI 466 >gi|220922532|ref|YP_002497834.1| type II and III secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947139|gb|ACL57531.1| type II and III secretion system protein [Methylobacterium nodulans ORS 2060] Length = 479 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 129/471 (27%), Positives = 201/471 (42%), Gaps = 57/471 (12%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 ++ + +NK ++V D+L+ A+V+ S +T+Y+ GK VG NV L+ + K Sbjct: 16 RVRVPVNKSQTMRVVAPFSDILIGASKIAEVIPLSDQTLYILGKEVGTTNVSLVDANKKV 75 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + +D+ + D ++ + +R D VL G + Sbjct: 76 IGVVDVEVGLDAGNIGAKVLGGSGARGVRFTTEGDKAVLTGTAE------------DAVA 123 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPS 227 + +N + VMN+ + QV LKV E+ R + +G + S +G S Sbjct: 124 ADRAVALASNLAPGGVMNMTTVRSTQQVMLKVRFIEIDRTAGRDLGVRWEGTNRSVAGRS 183 Query: 228 KSFAADFGGKFVSEGGDF---------SVKGVL-------------------DRFSFETV 259 + AA + GG+ +V G + + Sbjct: 184 GTVAATPEALTTAPGGNGIGLLSNAIPAVAGAALSTVAAPQFGQFAARLINSNSAKVDLF 243 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVV 315 + ALE R LAEP L A SGQ A F +GG++ T SSS +VT ++GV Sbjct: 244 ISALETQGLARRLAEPNLVASSGQPAEFLAGGEYPIPTASSSGALGVPTITVTFKEFGVR 303 Query: 316 LHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLA 371 L FTPTVLS G I L+++ EVS +P I VN G +P R+A T +E+ G + +A Sbjct: 304 LTFTPTVLSNGLINLQLEPEVSEIDPAISVNTGLVTVPGLSKRRARTNIEMRDGQSFAIA 363 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD-LSRP 430 GLL+ ++ E +P L IP+LGALF + F + +TE+ + TP LVKP L+ P Sbjct: 364 GLLQAVNEKNLEQLPWLGSIPVLGALFSSKEFRQRDTELVVIVTPHLVKPSKPGQPLATP 423 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY-------KGAIGFIYK 474 D +DA F + Q G+ G + K Sbjct: 424 LDTRMPTNDADYFLGGQTELPKSKNPGKPSRLQELISAEGAAIGSYGHVVK 474 >gi|307133496|dbj|BAJ19008.1| RcpA [Aggregatibacter actinomycetemcomitans] Length = 460 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 100/415 (24%), Positives = 181/415 (43%), Gaps = 25/415 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + S+ ++Q + + VS P AD + T ++ K G+ V G DG Sbjct: 29 AQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADG 88 Query: 107 KQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + + + ++ IA L+ ++N+ V+ V V+ G R+ ++S + Sbjct: 89 RPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRI 148 Query: 164 S-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 ET L + V++ NIA Q+ +K+++ EV + + + Sbjct: 149 VGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEA 208 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 +G S SGP FGG F G LD ++AL+ + + L Sbjct: 209 MGINWSHVAG-SGPLVGGNFGFGGGFNGNQGVL----RLDAKGISAFINALDNQSNGKIL 263 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 AEP ++ +SG++A GG+ + G+ ++ ++G+ L + RI L + Sbjct: 264 AEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLAL 322 Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 VS N G++P + RKA + E+ +G + ++ GL + + +PLL Sbjct: 323 DQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLG 382 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD + + FF Sbjct: 383 DIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKTGTMERFF 435 >gi|307548787|dbj|BAJ19109.1| RcpA [Aggregatibacter actinomycetemcomitans] gi|307548802|dbj|BAJ19123.1| RcpA [Aggregatibacter actinomycetemcomitans] Length = 460 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 100/415 (24%), Positives = 181/415 (43%), Gaps = 25/415 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + S+ ++Q + + VS P AD + T ++ K G+ V G DG Sbjct: 29 AQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADG 88 Query: 107 KQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + + + ++ IA L+ ++N+ V+ V V+ G R+ ++S + Sbjct: 89 RPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRI 148 Query: 164 S-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 ET L + V++ NIA Q+ +K+++ EV + + + Sbjct: 149 VGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEA 208 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 +G S SGP FGG F G LD ++AL+ + + L Sbjct: 209 MGINWSHVAG-SGPLVGGNFGFGGGFNGNQGVL----RLDAKGISAFINALDNQSNGKVL 263 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 AEP ++ +SG++A GG+ + G+ ++ ++G+ L + RI L + Sbjct: 264 AEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLAL 322 Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 VS N G++P + RKA + E+ +G + ++ GL + + +PLL Sbjct: 323 DQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLG 382 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD + + FF Sbjct: 383 DIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVIYPD--FEKTGTMERFF 435 >gi|8096202|dbj|BAA96101.1| unnamed protein product [Actinobacillus actinomycetemcomitans] Length = 460 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 100/415 (24%), Positives = 181/415 (43%), Gaps = 25/415 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + S+ ++Q + + VS P AD + T ++ K G+ V G DG Sbjct: 29 AQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADG 88 Query: 107 KQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + + + ++ IA L+ ++N+ V+ V V+ G R+ ++S + Sbjct: 89 RPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRI 148 Query: 164 S-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 ET L + V++ NIA Q+ +K+++ EV + + + Sbjct: 149 VGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEA 208 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 +G S SGP FGG F G LD ++AL+ + + L Sbjct: 209 MGINWSHVAG-SGPLVGGNFGFGGGFNGNQGVL----RLDAKGISAFINALDNQSNGKVL 263 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 AEP ++ +SG++A GG+ + G+ ++ ++G+ L + RI L + Sbjct: 264 AEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLAL 322 Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 VS N G++P + RKA + E+ +G + ++ GL + + +PLL Sbjct: 323 DQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLG 382 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD + + FF Sbjct: 383 DIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKTGTMERFF 435 >gi|4768955|gb|AAD29695.1| rough colony protein A [Aggregatibacter actinomycetemcomitans] Length = 460 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 100/415 (24%), Positives = 181/415 (43%), Gaps = 25/415 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + S+ ++Q + + VS P AD + T ++ K G+ V G DG Sbjct: 29 AQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADG 88 Query: 107 KQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + + + ++ IA L+ ++N+ V+ V V+ G R+ ++S + Sbjct: 89 RPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGEARSQEESDEVRRI 148 Query: 164 S-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 ET L + V++ NIA Q+ +K+++ EV + + + Sbjct: 149 VGEALGSGRKVTETKLGEDSLPFLDKYHYDDVVDNANIADTTQINVKLSVVEVNKKLSEA 208 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 +G S SGP FGG F G LD ++AL+ + + L Sbjct: 209 MGINWSHVAG-SGPLVGGNFGFGGGFNGNQGVL----RLDAKGISAFINALDNQSNGKVL 263 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 AEP ++ +SG++A GG+ + G+ ++ ++G+ L + RI L + Sbjct: 264 AEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLAL 322 Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 VS N G++P + RKA + E+ +G + ++ GL + + +PLL Sbjct: 323 DQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLG 382 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD + + FF Sbjct: 383 DIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKTGTMERFF 435 >gi|323493934|ref|ZP_08099051.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546] gi|323311875|gb|EGA65022.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546] Length = 441 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 113/442 (25%), Positives = 195/442 (44%), Gaps = 43/442 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +S+ + + + V V++ AD + + ++G G +VI+ Sbjct: 22 ASQLMSLDQGAAKTINLKRQIATVFVANQQIADYKIIDENKVVVYGVGQGSTSVIVYDRG 81 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G ++ N ++++ + + L+ T+ D N+ V V D VVL G+V + + Q+ L Sbjct: 82 GNEIYNAELVVNQSLRLLKQTIIARFPDENVVVSNVGDQVVLDGIVSSEEVKQKVYRLVG 141 Query: 166 TFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L + R + + + +V+N L + +Q+ +K+T+AEV Sbjct: 142 EMLKKERRRHTYELRDADGEEYDELDYTSRFTYDQVINNLKVLTTEQINVKLTVAEVSSS 201 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G +S +G GKFV++ DF+ + ++ V+ A Sbjct: 202 FLTELGVTYSDSGEP------------GKFVNKLLDFTAQDIVS------VISASGDDKI 243 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + LAEP L+ ISG+ ASF +GG+ S++ +YGV L V I Sbjct: 244 GQVLAEPNLSVISGEQASFLAGGEIPIAV--RDEDGISISYKEYGVKLAMVAKVTDSENI 301 Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS +P+ R R+A TTV L G + VLAGLL + ++ Sbjct: 302 RLTLIPEVSSIDESNKTSTGLISVPTLRTRRAQTTVHLKDGQSFVLAGLLTSEEREALTK 361 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP L IPILGALF ++ NR +TE+ I AT LV PV + P + D + Sbjct: 362 IPFLGDIPILGALFSHTTTNRSKTELIIVATVNLVDPVESEQVKLP--SFKRTSDIERLL 419 Query: 445 FNRVNKIYGPKEASEVEGQNYK 466 ++++ P+ +E + Sbjct: 420 RIDLSELNEPELEGTIEQGGFN 441 >gi|86144318|ref|ZP_01062650.1| Flp pilus assembly protein [Vibrio sp. MED222] gi|85837217|gb|EAQ55329.1| Flp pilus assembly protein [Vibrio sp. MED222] Length = 441 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 114/442 (25%), Positives = 194/442 (43%), Gaps = 43/442 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ + + + V V++ AD + + ++G G +VI+ Sbjct: 22 ASELMNLDQGAAKTINLKRQISTVFVANQEIADYKIIDENKVVVYGVGQGTTSVIVYDRG 81 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G ++ N ++++ + + L+ TL D N+ V V D VVL G+V + + Q+ L Sbjct: 82 GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNVGDQVVLDGIVGSEEIKQKINRLVG 141 Query: 166 TFLSQSGRNQY-----------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L + R A + +V+N L + +Q+ +K+T+AEV Sbjct: 142 EMLKKDRRRAAYELKDADGEALDELEYTAKYNYDQVINNLKVLTTEQINVKLTVAEVSSS 201 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G +S +G G FV++ DF+ + ++ V+ A Sbjct: 202 FLTELGVTYSDSGDP------------GTFVNKLLDFTAQDIVS------VISASGDDKI 243 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 R LAEP L+ ISG+ ASF +GG+ +++ +YGV L V I Sbjct: 244 GRVLAEPNLSVISGEQASFLAGGEIPIAI--RDEDGITISYKEYGVKLAMVAKVTDTENI 301 Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS +PS R R+A TTV L G + VLAGLL + ++ Sbjct: 302 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 361 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP+L IPILGALF +S NR +TE+ I AT LV PV + P + D + Sbjct: 362 IPILGDIPILGALFSHSSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 419 Query: 445 FNRVNKIYGPKEASEVEGQNYK 466 ++++ P+ + + + Sbjct: 420 RIDLSELDEPELENTINQGGFN 441 >gi|153833257|ref|ZP_01985924.1| general secretion pathway protein D [Vibrio harveyi HY01] gi|148870528|gb|EDL69443.1| general secretion pathway protein D [Vibrio harveyi HY01] Length = 456 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 112/406 (27%), Positives = 185/406 (45%), Gaps = 47/406 (11%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN + V + V +S+P AD V + T+ +F +GQ+ +I+ G D +L Sbjct: 34 SITLNDGQHISVKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQSRLIVYGIDEDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ D+ + L+ D+ + V+ V + V + G+V + + L T L + Sbjct: 94 SDRIIVDLDLTEIRRQLKFHFPDAKVTVQSVGEQVAVGGVVDSEETRDEIYRLVATLLGR 153 Query: 171 SGRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ N + K ++ + +A QV +K+++A+V Sbjct: 154 EKTEKWDKTYKFEFKSDYAQYEEPEGMIFARNMTWKGIVERIQVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 K +G S GSS G V D + T++ AL Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 LAEP LT +SG+SASF GG+ S+ +++ ++G+ L T VLS Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPVIV--STNNNVNISFKEFGIKLDLTAKVLSQD 312 Query: 327 RIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I +++ EVSE V A +P R+A TTVEL G + +L GL+ + + Sbjct: 313 KIRMQLAPEVSEVESYVEAAGVKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + IPILGA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 373 IPFVGDIPILGAAFRKATTERKRTELIIVATVNLVEPIKPKDVQLP 418 >gi|312116090|ref|YP_004013686.1| type II and III secretion system protein [Rhodomicrobium vannielii ATCC 17100] gi|311221219|gb|ADP72587.1| type II and III secretion system protein [Rhodomicrobium vannielii ATCC 17100] Length = 519 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 115/441 (26%), Positives = 205/441 (46%), Gaps = 42/441 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + LN+ ++V + LV++ ADVV + ++ + GK +G + L+ D + + Sbjct: 74 VRVVLNRSENVKVEYPFTEALVTNSDIADVVPLTNASINILGKKIGNTRLSLLDQDKRVI 133 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 +DI + D+ L +R + SN+RV V+ +++ G RA+ L+E F Sbjct: 134 GIVDIEVSHDVDMLRRVMRDNPSFSNLRVAAVNGRIMIAGQASDAVALSRALALAEQF-- 191 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK------------------ 211 + +V N + +A QV L+V E R++ + Sbjct: 192 ----------APGQVTNAMTVASPQQVMLEVRFIEASRNLARGVGVNVSGGGRYAGGTTG 241 Query: 212 --QIGFQHSITGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETVLHALERA 266 + + SIT S+G + + +D S G + + + + + ALE Sbjct: 242 VETLKEKSSITSDSTGITTNLISDLAAGLGSNLVPFGAMTGRVIGGSAPIDVTIRALESQ 301 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 R LAEP L A+SG +ASF +GG+ + V+ + + +G+ L FTPTVL+ Sbjct: 302 GLARRLAEPNLVALSGDTASFLAGGEFPFP-VAGTNNTITTEFKKFGIGLAFTPTVLARR 360 Query: 327 RIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 +I L+I+ EVSE + ++P VR+A TTVEL G + +AGL++ Sbjct: 361 QINLKIEPEVSEIDYSAAVKIGNVEVPGLSVRRASTTVELRDGQSFAIAGLMQGFHNADT 420 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHYSVEDDAK 441 +P + +PILGAL R++ F ++ET++ I TP LV+P+ D P + +D + Sbjct: 421 RQLPWIGDVPILGALTRSTSFQKKETDLVIIVTPCLVQPMVPGDAQGSPLANRRPGNDEE 480 Query: 442 AFFFNRVNKIYGPKEASEVEG 462 F + ++ + ++ G Sbjct: 481 FFIAGK-QEVQTSRPRQDLTG 500 >gi|86159249|ref|YP_466034.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775760|gb|ABC82597.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 487 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 125/456 (27%), Positives = 210/456 (46%), Gaps = 54/456 (11%) Query: 29 IKEANAAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 A V + D E+G + +S+ + +L V + + V++P AD+ V +P + Sbjct: 17 AAAAQDVVPTMRIDREVGAARSMSLEAGQNRLLVVSDQIGRIAVANPDVADLKVVTPYQV 76 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 L K +G ++ L D ++ + + + R++ L L+ A I V D VV+ Sbjct: 77 LLTAKGIGSTDLTLWDRDNHPLV-IALQVTRNLEGLRKQLKELFAGEKIEVSSAGDLVVI 135 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V ++ +R E++ + KV NL+ ++G+ QV L+V AEV R Sbjct: 136 SGQVSDVRIPERVAEVARLHAT-------------KVANLVQVSGQQQVQLEVRFAEVGR 182 Query: 208 DILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVL-------------- 251 L+++G + + G F++ + ++ G Sbjct: 183 TGLREMGVNFFHKSDDGKRVGGMTGNRTYPGDFLNTQSNPAIPGTGPRGLWGPGMPPDVP 242 Query: 252 ---------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +F F +L+ LE++ +TLAEPTL A+SGQ A+F +GG+ Sbjct: 243 NPAFNNAFSFFLSQGGQFPFSVMLNLLEQSNLAKTLAEPTLVAMSGQEAAFLAGGELPIP 302 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352 S + G T+V +G+ L FTPTV+ I LR++ EVS+ + V +P Sbjct: 303 LAS-TFGQTAVEWKKFGIQLRFTPTVIGD-AIHLRLKAEVSDLDPTTAVTVGGTTIPGLV 360 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+++TT+ L G + +AGL+ D ++ +P+L IPILGALFR+ + R+ETE+ + Sbjct: 361 SRQSETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAYQRDETELLV 420 Query: 413 AATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFN 446 T L KPVA +L P D + DA F Sbjct: 421 VVTARLAKPVAPHELPPLPTDFENNDPSDAALFLLG 456 >gi|197123317|ref|YP_002135268.1| type II and III secretion system protein [Anaeromyxobacter sp. K] gi|196173166|gb|ACG74139.1| type II and III secretion system protein [Anaeromyxobacter sp. K] Length = 484 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 126/456 (27%), Positives = 210/456 (46%), Gaps = 54/456 (11%) Query: 29 IKEANAAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 A V + D E+G + +S+ + +L V + + V++P AD+ V +P + Sbjct: 17 AAAAQDVVPTMRIDREVGAARSMSLEAGQNRLLVVSDQIGRIAVANPDVADLKVVTPYQV 76 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 L K +G ++ L D ++ + + + R++ L L+ A I V D VV+ Sbjct: 77 LLTAKGIGSTDLTLWDRDNHPLV-VALQVTRNLEGLRKQLKELFAGEKIDVSSAGDLVVI 135 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V ++ +R E++ S KV NL+ ++G+ QV L+V AEV R Sbjct: 136 SGQVSDVRIPERVAEVARLHAS-------------KVANLVQVSGQQQVQLEVRFAEVGR 182 Query: 208 DILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVL-------------- 251 L+++G + + G F++ + ++ G Sbjct: 183 TGLREMGVNFFHKSDDGKRVGGMTGNRTYPGDFLNTQSNPAIPGTGPRGLWGPGLPPDVP 242 Query: 252 ---------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +F F +L+ LE++ +TLAEPTL A+SGQ A+F +GG+ Sbjct: 243 NAAFNNAFSFFLSQGGQFPFSVMLNLLEQSNLAKTLAEPTLVAMSGQEAAFLAGGELPIP 302 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352 S + G T+V +G+ L FTPTV+ I LR++ EVS+ + V +P Sbjct: 303 LAS-TFGQTAVEWKKFGIQLRFTPTVIGD-AIHLRLKAEVSDLDPTTAVTVGGTTIPGLV 360 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+++TT+ L G + +AGL+ D ++ +P+L IPILGALFR+ + R+ETE+ + Sbjct: 361 SRQSETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAYQRDETELLV 420 Query: 413 AATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFN 446 T L KPVA +L P D + DA F Sbjct: 421 VVTARLAKPVAPHELPPLPTDFENNDPSDAALFLLG 456 >gi|148974885|ref|ZP_01811865.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3] gi|145965394|gb|EDK30643.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3] Length = 441 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 112/442 (25%), Positives = 195/442 (44%), Gaps = 43/442 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ + + + V V++ AD + + ++G G +VI+ Sbjct: 22 ASELMNLDQGAAKTINLKRQISTVFVANQEIADYKIIDENKVVVYGVGQGTTSVIVYDRG 81 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G ++ N ++++ + + L+ TL D N+ V + D VVL G+V + + Q+ L Sbjct: 82 GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNIGDQVVLDGIVGSEEIKQKINRLVG 141 Query: 166 TFLSQSGRNQY-----------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L++ R A + +V+N L + +Q+ +K+T+AEV Sbjct: 142 EMLNKERRRAAYELKDADGEALDEIEYTAQYNYDQVINNLKVLTTEQINVKLTVAEVSSS 201 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G +S +G G FV++ DF+ + ++ V+ A Sbjct: 202 FLTELGVTYSDSGEP------------GTFVNKLLDFTAQDIV------AVISASGDDKI 243 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 R LAEP L+ ISG+ ASF +GG+ +++ +YGV L V I Sbjct: 244 GRVLAEPNLSVISGEQASFLAGGEIPIAV--RDEDGITISYKEYGVKLAMVAKVTDTENI 301 Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS +PS R R+A TTV L G + VLAGLL + ++ Sbjct: 302 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 361 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP+L IPILGALF ++ NR +TE+ I AT LV PV + P + D + Sbjct: 362 IPILGDIPILGALFSHTSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 419 Query: 445 FNRVNKIYGPKEASEVEGQNYK 466 ++++ P+ + + + Sbjct: 420 RIDLSELDEPELENTINQGGFN 441 >gi|218676249|ref|YP_002395068.1| Flp pilus assembly protein [Vibrio splendidus LGP32] gi|218324517|emb|CAV25991.1| Flp pilus assembly protein [Vibrio splendidus LGP32] Length = 446 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 114/442 (25%), Positives = 194/442 (43%), Gaps = 43/442 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ + + + V V++ AD + + ++G G +VI+ Sbjct: 27 ASELMNLDQGAAKTINLKRQISTVFVANQEVADYKIIDENKVVVYGVGQGATSVIVYDRG 86 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G ++ N ++++ + + L+ TL D N+ V V D VVL G+V + + Q+ L Sbjct: 87 GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNVGDQVVLDGIVGSEEIKQKINRLVG 146 Query: 166 TFLSQSGRNQY-----------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L + R A + +V+N L + +Q+ +K+T+AEV Sbjct: 147 EMLKKDRRRAAYELKDADGEALDELEYTAKYNYDQVINNLKVLTTEQINVKLTVAEVSSS 206 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G +S +G G FV++ DF+ + ++ V+ A Sbjct: 207 FLTELGVTYSDSGQP------------GTFVNKLLDFTAQDIVS------VISASGDDKI 248 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 R LAEP L+ ISG+ ASF +GG+ +++ +YGV L V I Sbjct: 249 GRVLAEPNLSVISGEQASFLAGGEIPIAVRDQD--GITISYKEYGVKLAMVAKVTDTENI 306 Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS +PS R R+A TTV L G + VLAGLL + ++ Sbjct: 307 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 366 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP+L IPILGALF +S NR +TE+ I AT LV PV + P + D + Sbjct: 367 IPILGDIPILGALFSHSSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 424 Query: 445 FNRVNKIYGPKEASEVEGQNYK 466 ++++ P+ + + + Sbjct: 425 RIDLSELDEPELENTINQGGFN 446 >gi|312883308|ref|ZP_07743034.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368924|gb|EFP96450.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 440 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 116/425 (27%), Positives = 197/425 (46%), Gaps = 35/425 (8%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 + ++I + + + + V + +PT AD + + +FG VG +VI+ G Sbjct: 26 SAAEILNIDQDSAKTINLKNSISTVFLVNPTIADYKIIDDNKLVIFGVGVGSTSVIVYGK 85 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 G ++ N ++++ + + L+ T+ I V + D VVL G+V + + + L Sbjct: 86 GGSEIYNTELIVNKSLRLLKQTILARFPGETISVSNIGDQVVLDGVVSSERVKKAVSRLV 145 Query: 165 ETFLSQ----------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 L + SG N + +++N + + +Q+ +K+T+AEV L +IG Sbjct: 146 GEMLKKQRNVQKYSDASGGNTQLEYNYHEIINNMKVLSTEQINVKITVAEVASSFLNEIG 205 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 +S G +G KFV++ FS K ++ V+ A+ + LAE Sbjct: 206 VSYSEMGGEAG-----------KFVNKITHFSAKDIV------AVISAVGNESVGHVLAE 248 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L+ ISG+ ASF GG+ S++ +YGV L V I L + Sbjct: 249 PNLSVISGEKASFLVGGEIPIGV--RDDKGVSISYKEYGVKLSMIAKVADSENIRLSLFP 306 Query: 335 EVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVS V V PS + R+A+TTV+L G + VLAGLL+ + ++ +P L Sbjct: 307 EVSTIDENHVTKVGQLTAPSLQTRRAETTVQLKDGQSFVLAGLLRSEERESLSKVPYLGD 366 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 IPI+GALF +S+ +R +TE+ I AT LV PV + P + D + +++ Sbjct: 367 IPIIGALFSHSKTDRSKTELIIVATVNLVTPVDPDKVKLP--GFHRTSDIERLLNIDLSE 424 Query: 451 IYGPK 455 + PK Sbjct: 425 LTEPK 429 >gi|320158383|ref|YP_004190761.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] gi|319933695|gb|ADV88558.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] Length = 441 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 109/452 (24%), Positives = 198/452 (43%), Gaps = 43/452 (9%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 I + + + + +++ + + + V V DP AD + + ++G G Sbjct: 12 TIGFASLSVNSNELMNLNQGSAKTISLKRQISTVFVGDPEIADYKIIDETKVVVYGVGQG 71 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 +VI+ G ++ N ++++ + + ++ TL D +I + V + VVL G+V + + Sbjct: 72 ATSVIVYDRAGNELYNAEVVVNKSLRLVKQTLIARFPDESINITNVGEQVVLDGVVSSDE 131 Query: 156 DSQRAVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTL 198 + L ++ + A ++N L + +Q+ + Sbjct: 132 IKTQIYRTVGEMLKKNSTRDTFTLKDANGDEVDSLDYTATYIYDNIINNLKVLTTEQINV 191 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 K+T+AEV L ++G +S +G G+FV++ DF+ + ++ Sbjct: 192 KLTVAEVSSSFLSELGVSYSDSGQ------------AGRFVNKLLDFTAQDIV------A 233 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 V+ A R LAEP L+ ISG++ASF GG+ +++ +YGV L Sbjct: 234 VITASGDDQIGRVLAEPNLSVISGETASFLVGGEIPIAI--RDEDGITISYKEYGVKLSM 291 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTVELPSGGTIVLAGLL 374 V I L + EVS ++P+ R RKA TTV+L G + VLAGLL Sbjct: 292 VAKVTDSENIRLSLLPEVSSIDEENKTANGLINVPALRTRKAQTTVQLKDGQSFVLAGLL 351 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 + ++ IP+L IPILGALF +++ N+ +TE+ I AT LV PV D+ P + Sbjct: 352 TSEERESLSKIPVLGDIPILGALFSHTKSNQTKTELIIVATVNLVDPVKAEDIKLP--SF 409 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 D + ++ + P+ + + Sbjct: 410 RRTSDIERLLRIDLSSMNEPELEDTLNKGGFN 441 >gi|328470518|gb|EGF41429.1| rough colony protein RcpA [Vibrio parahaemolyticus 10329] Length = 447 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 118/431 (27%), Positives = 198/431 (45%), Gaps = 38/431 (8%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + G+ +S+ + V ++ V V+D AD V + + ++G G ++I Sbjct: 19 ASVSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGKLVIYGIGRGATSIIA 78 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G ++ N ++++ + + L+ T+ D +I++ + + +V+ G+V + + + Sbjct: 79 YDRAGNEIYNAEVVVNKSLRLLKQTIIARYPDEDIKLTNIGEQIVIDGVVSSEEIKDKVY 138 Query: 162 ELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 L +S + + A + ++N L + DQ+ +K+T+AE Sbjct: 139 RHVGEMLKKSKQRNTFELSGANGESVDPLDYTATYVFEDIINNLKVLTTDQINVKLTVAE 198 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V L ++G ++ T S G+FV++ DF+ + ++ V+ A Sbjct: 199 VSSSFLTELGVSYAETNGKSIGG-------AGQFVNKILDFTAEDIV------AVISASG 245 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + LAEP L+ ISG+SASF GG+ SVT +YGV L V Sbjct: 246 NDSIGQVLAEPNLSVISGESASFLVGGEIPITV--RDNDGISVTYKEYGVKLSMVAKVTD 303 Query: 325 PGRIGLRIQTEVSEP--VIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I L + EVS GVN+G +PS R RKA TTV+L G + VLAGLL + Q+ Sbjct: 304 SENIRLSLLPEVSSIDKTNGVNSGLVSVPSLRTRKAQTTVQLKDGQSFVLAGLLTSEEQE 363 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L IPILGALF + R +TE+ I AT LV PV D+ P + D Sbjct: 364 SLAKIPYLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKETDIKLP--KFKRTSDL 421 Query: 441 KAFFFNRVNKI 451 + ++K+ Sbjct: 422 ERLLKLDLSKV 432 >gi|84385684|ref|ZP_00988715.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01] gi|84379664|gb|EAP96516.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01] Length = 456 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 105/406 (25%), Positives = 186/406 (45%), Gaps = 47/406 (11%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN +Q+ + V +++P D + + T+ +F +GQ+ +I+ G DG +L Sbjct: 34 SITLNDGQHIQLKSPIGQVFINNPDIVDYKIINDNTIVVFANAIGQSRLIVYGIDGDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ D+ + L+ ++ ++++ V + V + G+V + L T L + Sbjct: 94 SDRIIVDLDLTDIRRQLKFHFPNAKVKIQSVGEQVAVSGLVDSEATRDDIYRLVATLLGR 153 Query: 171 SGRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ N + + ++ + +A QV +K+++A+V Sbjct: 154 EKTEKWDKTVKLEFKSDSSNYEEPESFVFARNMTWEGIIERIEVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + +G S GSS G V D + T++ AL Sbjct: 214 ESFGQTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 LAEP LT +SG+SASF GG+ +S+ +++ ++G+ L T VLS Sbjct: 255 QIAEVLAEPNLTVLSGESASFLVGGEVPVIVTTSNN--VNISFKEFGIKLDLTAKVLSQD 312 Query: 327 RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 RI +++ EVSE + + P R+A TTVEL G + VL GL+ + + Sbjct: 313 RIRMQLAPEVSEVEGYIETAGIKVPQLASRRAMTTVELADGDSFVLGGLMSSADLEKMQK 372 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + IP+LGA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 373 IPFVGDIPVLGAAFRKATTERKRTELIIVATVNLVEPMKPKDIQLP 418 >gi|26000712|gb|AAN75208.1| RcpA [Aggregatibacter actinomycetemcomitans] Length = 460 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 99/415 (23%), Positives = 180/415 (43%), Gaps = 25/415 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + S+ ++Q + + VS P AD + T ++ K G+ V G DG Sbjct: 29 AQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADG 88 Query: 107 KQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + + + ++ IA L+ ++N+ V+ V V+ G R+ ++S + Sbjct: 89 RPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRI 148 Query: 164 S-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 ET L + V++ NIA Q+ +K+++ EV + + + Sbjct: 149 VGEALGSGRKVTETKLGEDSLPFLDKYHYDDVVDNANIADTTQINVKLSVVEVNKKLSEA 208 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 +G S SGP FGG F G LD ++AL+ + + L Sbjct: 209 MGINWSHVAG-SGPLVGGNFGFGGGFNGNQGVL----RLDAKGISAFINALDNQSNGKVL 263 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 EP ++ +SG++A GG+ + G+ ++ ++G+ L + RI L + Sbjct: 264 PEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLAL 322 Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 VS N G++P + RKA + E+ +G + ++ GL + + +PLL Sbjct: 323 DQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLG 382 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IPILG+ FR++ R++ E+ I AT +VKPV +D+ PD + + FF Sbjct: 383 DIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVIYPD--FEKTGTMERFF 435 >gi|149178342|ref|ZP_01856934.1| probable type II secretion system protein [Planctomyces maris DSM 8797] gi|148842868|gb|EDL57239.1| probable type II secretion system protein [Planctomyces maris DSM 8797] Length = 546 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 107/437 (24%), Positives = 190/437 (43%), Gaps = 38/437 (8%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI--GHDG 106 ++S+ IL++ +DV V ++DP+K +VV + + + GK+ G + L Sbjct: 67 ELSVQQRHSKILKMKMDVFRVAIADPSKIEVVAFGSQEVEVIGKDTGTTTMTLWLGDEAN 126 Query: 107 KQMLNLDILIERD----------IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 Q+L++ + +E D + + F +S I++ +D +++ G R Q+ Sbjct: 127 PQILSVQVKVEGDNSIEDLRRMEYGEFQKMINEFFPNSKIQLVPFADKLIVRGQARDEQE 186 Query: 157 SQRAVELSET-----------------FLSQSGRNQYANSS---SKKVMNLLNIAGEDQV 196 + + + + F + + + + V+++L + GE Q+ Sbjct: 187 AVQIITIIRARSGSGGGQGGGGGGGSLFADGAAADPFPGGAMLPEATVIDMLKVPGEKQI 246 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 LKV IA++ R + G ++ F + + GG V Sbjct: 247 MLKVRIAQIDRSAARTASTNIIAQSGDFGWAQLFTG--VAQQLGNGGTGLVTASFTSSDV 304 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGV 314 + + AL + + LAEP L ISG++A+F SGG+ TV GA + T +G Sbjct: 305 DVFISALAQNGYAKILAEPNLVTISGRTANFISGGEFAVPTVVGVGGAQAATTTFKGFGT 364 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L F PTVL RI L++ S + +G + V+ TTV+L G + +AGLL Sbjct: 365 QLSFLPTVLDKDRIRLQVSPSFSTVNPALTSGGVLGVNVQAVTTTVDLREGQVLAIAGLL 424 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDD 432 ++ + +P + IP++G LF N +R+ETE+ I +P LV P+ D P Sbjct: 425 QEQQRGDLNRVPFIGDIPLVGPLFSNKGVSRDETELIILISPELVHPMEPEDAPTVLPGM 484 Query: 433 HYSVEDDAKAFFFNRVN 449 + D FF N + Sbjct: 485 EVTEPGDVDFFFMNNIE 501 >gi|28900576|ref|NP_800231.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633] gi|153836379|ref|ZP_01989046.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810] gi|260877521|ref|ZP_05889876.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034] gi|260901740|ref|ZP_05910135.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037] gi|308095456|ref|ZP_05906034.2| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466] gi|308125917|ref|ZP_05777993.2| rough colony protein RcpA [Vibrio parahaemolyticus K5030] gi|28808956|dbj|BAC62064.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633] gi|149750281|gb|EDM61026.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810] gi|308087133|gb|EFO36828.1| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466] gi|308090527|gb|EFO40222.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034] gi|308108872|gb|EFO46412.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037] gi|308114419|gb|EFO51959.1| rough colony protein RcpA [Vibrio parahaemolyticus K5030] Length = 447 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 118/431 (27%), Positives = 198/431 (45%), Gaps = 38/431 (8%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + G+ +S+ + V ++ V V+D AD V + + ++G G ++I Sbjct: 19 ASVSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGKLVIYGIGRGATSIIA 78 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G ++ N ++++ + + L+ T+ D +I++ + + +V+ G+V + + + Sbjct: 79 YDRAGNEIYNAEVVVNKSLRLLKQTIIARYPDEDIKLTNIGEQIVIDGVVSSEEIKDKVY 138 Query: 162 ELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 L +S + + A + ++N L + DQ+ +K+T+AE Sbjct: 139 RHVGEMLKKSKQRNTFELSGANGESVDPLDYTATYVFEDIINNLKVLTTDQINVKLTVAE 198 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V L ++G ++ T S G+FV++ DF+ + ++ V+ A Sbjct: 199 VSSSFLTELGVSYAETNGKSIGG-------AGQFVNKILDFTAEDIV------AVISASG 245 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + LAEP L+ ISG+SASF GG+ SVT +YGV L V Sbjct: 246 NDSIGQVLAEPNLSVISGESASFLVGGEIPITV--RDNDGISVTYKEYGVKLSMVAKVTD 303 Query: 325 PGRIGLRIQTEVSEP--VIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I L + EVS GVN+G +PS R RKA TTV+L G + VLAGLL + Q+ Sbjct: 304 SENIRLSLLPEVSSIDKTNGVNSGLVSVPSLRTRKAQTTVQLKDGQSFVLAGLLTSEEQE 363 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L IPILGALF + R +TE+ I AT LV PV D+ P + D Sbjct: 364 SLAKIPYLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKETDIKLP--KFERTSDL 421 Query: 441 KAFFFNRVNKI 451 + ++K+ Sbjct: 422 ERLLKLDLSKV 432 >gi|319941902|ref|ZP_08016223.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis 3_1_45B] gi|319804555|gb|EFW01425.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis 3_1_45B] Length = 485 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 125/431 (29%), Positives = 215/431 (49%), Gaps = 36/431 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +S+ L + L + V V+ P+ A V R + +FG G+ +++++G DG+ + Sbjct: 1 MSVSLYQGKALSFNEQIGAVFVAQPSIASYQVVGNRKVVVFGSYPGKTSLMVLGTDGRTL 60 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL- 168 N + + D++ +EM L+ +++ ++D V + G V T Q++ V + L Sbjct: 61 YNGLVEVAYDVSSMEMALKSSFPKLKLQLVALNDGVAVRGKVETAQEAANVVAFLDAMLQ 120 Query: 169 ----------------SQSGRNQYANSSS---------KKVMNLLNIAGEDQVTLKVTIA 203 Q G+ + + +++ K++N L + +QVT++V A Sbjct: 121 VNPQQAQMAAADVSAAGQEGQQEKSGAATGTGTLGARIGKIINQLTVTTPNQVTVRVRFA 180 Query: 204 EVRRDILKQIGFQH--SITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVLDRFSFETV 259 EV R + Q+GF+ S +GS G + A + S G F + RF+F ++ Sbjct: 181 EVNRKLSDQLGFKWKGSYSGSRGGITFGSADNPIISNPNNSLGHLFDPATMAARFTFGSL 240 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 A+ + LAEP LT +SG++ASF +GGQ +++ S G + DYGV+L T Sbjct: 241 FDAMASEELVSILAEPNLTVVSGETASFLAGGQIPFQS-SDGDGGFDIEFKDYGVLLSIT 299 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 PT+LS RI LR++ EVSE P + VR+A++T+EL SG + +AGLLK Sbjct: 300 PTILSGNRISLRLRPEVSERSDSNGIQFMGSTQPGFIVRRAESTIELASGQSFAIAGLLK 359 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 +D IP ++ +PI+GAL R+ F R ETE+ I AT ++ P + + P++ Sbjct: 360 NDFSNTVNKIPGIADLPIIGALARSKAFERGETELVIVATAYISTP-SGEPYTIPNEEMY 418 Query: 436 VEDDAKAFFFN 446 V + +F + Sbjct: 419 VPTIFERYFMD 429 >gi|262275469|ref|ZP_06053279.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Grimontia hollisae CIP 101886] gi|262220714|gb|EEY72029.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Grimontia hollisae CIP 101886] Length = 454 Score = 280 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 104/406 (25%), Positives = 182/406 (44%), Gaps = 31/406 (7%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + I++G L+ + V +SDP AD V + +FG+ +G +I+ Sbjct: 25 QASAAGVINLGTGDARSLEFNAVIGTVFISDPDIADYQVIDSNKLVVFGRKLGTTTLIVF 84 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 D + + + I++ + + +E L D ++ V + + VVL G+V T ++ Sbjct: 85 DEDSQTLSHRKIVVNQSLTKIEQILAIRYPDVDVSVLNMGEQVVLTGVVPTQKEKNEIYA 144 Query: 163 LSETFLSQS----------------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + LS+ + A + + ++N L + QV +K+TIAEV Sbjct: 145 VVGELLSKKFVERRTQWKTSFDEEFDIDFMARRTYEGLVNNLEVTVTKQVNVKLTIAEVN 204 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 ++ ++G + F G G G + + A+ Sbjct: 205 SSLINELGIKWG---------TILEDGFAGNGQFFKGITGFGG--RTTNVAAYISAINDD 253 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + L+EP ++ ISG++ASF GG+ + ++G+ L VL Sbjct: 254 NVGQVLSEPNVSVISGETASFLVGGEIPI--TYRIDDGYRIEYKEFGIGLDLAAEVLRDD 311 Query: 327 RIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L + +VS G D+PS++VR+A TT+EL G + VLAGLL + ++ Sbjct: 312 KIKLSVMPQVSSVDNQYGDTLLDIPSFKVRRARTTLELGDGDSFVLAGLLSSEDEEALSK 371 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + +PILGALFRN+ R +TE+ I AT LV+PV+ +++ P Sbjct: 372 IPFIGDVPILGALFRNTSTTRRKTELVIVATVSLVEPVSSANITIP 417 >gi|86147184|ref|ZP_01065500.1| general secretion pathway protein D [Vibrio sp. MED222] gi|85835068|gb|EAQ53210.1| general secretion pathway protein D [Vibrio sp. MED222] Length = 439 Score = 280 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 117/417 (28%), Positives = 188/417 (45%), Gaps = 40/417 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 ++ + + ++ V +S AD V + +FGKN+G A+ I Sbjct: 20 AQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAK 79 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G+++ N +L+ + +E + D+ + V + + VVL G+V Q+ +L Sbjct: 80 GRELFNRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVG 139 Query: 166 TFLSQSGRNQYANSSSKK----------------VMNLLNIAGEDQVTLKVTIAEVRRDI 209 L ++ + S ++ V+N + I+ QV +K+TIAEV Sbjct: 140 ELLGKTANSTSFQMSDEESDDIDVGFMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSF 199 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 ++ G + G+ G FV + FS ++ V+ AL + Sbjct: 200 MQDFGIKMGSNGTP------------GIFVDQLTHFSASDIVS------VISALGTDSVG 241 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + LAEP L+ ISG+ ASF GG+ TV GAT+V ++GV L VL +I Sbjct: 242 QVLAEPNLSVISGEKASFLVGGELPVVTV--IDGATNVEYKEFGVRLELLAKVLRDDKIK 299 Query: 330 LRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L + EVS ++ D+P+ R R+A TTVEL G + VL GLL + ++ IP Sbjct: 300 LALTPEVSSLDGSYSSDNFDLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPY 359 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 + IPI+GALFR++ R +TE+ I AT LV+PV + P K FF Sbjct: 360 IGDIPIIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPT--MKKTSTLKRFF 414 >gi|163801677|ref|ZP_02195575.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4] gi|159174594|gb|EDP59396.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4] Length = 456 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 109/406 (26%), Positives = 184/406 (45%), Gaps = 47/406 (11%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN + V + V +S+P AD V + T+ +F K VG + +++ G + +L Sbjct: 34 SITLNDGKHISVKQPIGKVFISNPDIADYKVINDTTLVVFAKGVGHSRLLVYGANEDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ D+ + L+ D+ + V+ V + V + G+V + + L L + Sbjct: 94 SDRIIVDLDLTQIRRQLKFHFPDAKVTVQSVGEQVAVSGVVDSEETRDAIYRLVANLLGR 153 Query: 171 SGRNQYANSS------------------------SKKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ +SS + ++ + +A QV +K+++A+V Sbjct: 154 EKTEKWESSSKRSFKSDHGTFEEPESMIFARNMTWEGIIEQIQVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 K +G + GSS G V D + T++ AL Sbjct: 214 ESFGKTVGVDWNSVGSSVGGF-------------------VFDQFDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 LAEP LT +SG+SASF GG+ S T+++ ++G+ L VLS Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPVII--SDANGTNISFKEFGIKLDLAAKVLSQD 312 Query: 327 RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I +++ EVSE V A + P R+A TTVEL G + +L GL+ + + Sbjct: 313 KIRMQLAPEVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + IPILGA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 373 IPFIGDIPILGAAFRRATTERKRTELIIVATVNLVEPIKPKDVHLP 418 >gi|258620803|ref|ZP_05715838.1| Flp pilus assembly protein [Vibrio mimicus VM573] gi|258587001|gb|EEW11715.1| Flp pilus assembly protein [Vibrio mimicus VM573] Length = 444 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 109/442 (24%), Positives = 190/442 (42%), Gaps = 42/442 (9%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + +++ + + + V V+D T AD + + ++G G +VI+ G Sbjct: 23 AELMNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGG 82 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 ++ N ++++ + + L+ TL D +I V V D VVL G V + + + L Sbjct: 83 NEIYNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGE 142 Query: 167 FLS------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L + A V+N L + +Q+ +K+TIAEV Sbjct: 143 MLKKNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSS 202 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G + GKF ++ DF+ + ++ ++ A Sbjct: 203 FLSELGVSYG----------DIGGGDVGKFYNKLLDFTAQDIV------AIIAASGNDDI 246 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + LAEP L+ ISG++ASF GG+ T ++ +YG+ L V I Sbjct: 247 GQVLAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENI 304 Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS ++ + PS + RKA TTV+L G + VLAGLL + ++ Sbjct: 305 RLSLLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRK 364 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP+L IPILGALF +++ +R++TE+ I AT LV PV + P + D + Sbjct: 365 IPILGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLL 422 Query: 445 FNRVNKIYGPKEASEVEGQNYK 466 ++ + P+ + + Sbjct: 423 RIDLSGVDEPELQRTINAGGFN 444 >gi|218708107|ref|YP_002415728.1| putative bacterial type II secretion system protein D; rcpA, CpaC [Vibrio splendidus LGP32] gi|218321126|emb|CAV17076.1| putative bacterial type II secretion system protein D; rcpA, CpaC [Vibrio splendidus LGP32] Length = 435 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 117/417 (28%), Positives = 188/417 (45%), Gaps = 40/417 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 ++ + + ++ V +S AD V + +FGKN+G A+ I Sbjct: 16 AQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAK 75 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G+++ N +L+ + +E + D+ + V + + VVL G+V Q+ +L Sbjct: 76 GRELFNRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVG 135 Query: 166 TFLSQSGRNQYANSSSKK----------------VMNLLNIAGEDQVTLKVTIAEVRRDI 209 L ++ + S ++ V+N + I+ QV +K+TIAEV Sbjct: 136 ELLGKTANSTSFQMSDEESDDIDVGFMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSF 195 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 ++ G + G+ G FV + FS ++ V+ AL + Sbjct: 196 MQDFGIKMGSNGTP------------GIFVDQLTHFSASDIVS------VISALGTDSVG 237 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + LAEP L+ ISG+ ASF GG+ TV GAT+V ++GV L VL +I Sbjct: 238 QVLAEPNLSVISGEKASFLVGGELPVVTV--IDGATNVEYKEFGVRLELLAKVLRDDKIK 295 Query: 330 LRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L + EVS ++ D+P+ R R+A TTVEL G + VL GLL + ++ IP Sbjct: 296 LALTPEVSSLDGSYSSDNFDLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPY 355 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 + IPI+GALFR++ R +TE+ I AT LV+PV + P K FF Sbjct: 356 IGDIPIIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPT--MKKTSTLKRFF 410 >gi|262164949|ref|ZP_06032687.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus VM223] gi|262027329|gb|EEY45996.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus VM223] Length = 444 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 109/442 (24%), Positives = 189/442 (42%), Gaps = 42/442 (9%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + +++ + + + V V+D T AD + + ++G G +VI+ G Sbjct: 23 AELMNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGG 82 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 ++ N ++++ + + L+ TL D +I V V D VVL G V + + + L Sbjct: 83 NEIYNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGE 142 Query: 167 FLS------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L + A V+N L + +Q+ +K+TIAEV Sbjct: 143 MLKKNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSS 202 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G + GKF ++ DF+ + ++ ++ A Sbjct: 203 FLSELGVSYG----------DIGGGDVGKFYNKLLDFTAQDIV------AIIAASGNDDI 246 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + LAEP L+ ISG++ASF GG+ T ++ +YG+ L V I Sbjct: 247 GQVLAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENI 304 Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS ++ + PS + RKA TTV+L G + VLAGLL + ++ Sbjct: 305 RLSLLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRK 364 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 IP+L IPILGALF +++ +R++TE+ I AT LV PV + P + D + Sbjct: 365 IPILGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLL 422 Query: 445 FNRVNKIYGPKEASEVEGQNYK 466 + + P+ + + Sbjct: 423 RIDLTGVDEPELQRTINAGGFN 444 >gi|149176581|ref|ZP_01855194.1| putative outer membrane channel for pilus assembly CpaC [Planctomyces maris DSM 8797] gi|148844694|gb|EDL59044.1| putative outer membrane channel for pilus assembly CpaC [Planctomyces maris DSM 8797] Length = 590 Score = 279 bits (713), Expect = 8e-73, Method: Composition-based stats. Identities = 120/456 (26%), Positives = 194/456 (42%), Gaps = 37/456 (8%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGK-KISIGLNKVIILQVPVDVQDVLVS 72 + L S +++ ++ + V++ K K+ + IL+ P ++ V Sbjct: 17 VTLVCSLIALSAYAQDEQPAPPGASEPVVQVSSEKMKLEVTEKFSKILKFPGKIKRVDGF 76 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 DPT V +P + + G +++ +GK + L+ + D HL+ LR Sbjct: 77 DPTVLSVSALTPNELRIQALVPGVTTLVITDENGK-VYTLETFVSGDARHLQAYLRELFP 135 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 S++ V D+VVL G V + VE++E F V+N + +AG Sbjct: 136 TSSVTAIKVQDSVVLRGWVTEPEAITEMVEIAEQFF------------PNGVLNQMKLAG 183 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------PSKSFAADFGGKFVSEGG 243 QV LKV I EV+R ++Q+G S P FGG Sbjct: 184 VQQVLLKVKIMEVQRSKIRQLGVNWLFLNQSGYAYSTPGTLVPITGINVPFGGPPALTAS 243 Query: 244 DFSVKGVLDRFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G F F+ + AL++ ++ LAEP L SG+ A+ SGG+ Sbjct: 244 QNLISGTSLGFGLVDGSSIFQAFIEALKKEALLKILAEPELVTTSGRPANLLSGGEFPI- 302 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYR 352 V S G ++ ++GV + P VL GR+ L +Q EVSE + V +P Sbjct: 303 LVPQSLGTVTIEWREFGVRMEAVPIVLGNGRLRLEVQPEVSERDFSNAVQVAGTTVPGLT 362 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 VR+A+T VE+ G T+V+AGL+ P L ++P++GA FR R+ ETE+ I Sbjct: 363 VRRANTAVEMNFGETMVIAGLISSRKTAETSKTPFLGELPVVGAAFRRVRYTEGETELVI 422 Query: 413 AATPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFN 446 TP LV P+ + P + D + + Sbjct: 423 MVTPELVSPLKSGQVPPGGPGLFTATPTDRELYLDG 458 >gi|156977409|ref|YP_001448315.1| Flp pilus assembly protein, secretin CapC [Vibrio harveyi ATCC BAA-1116] gi|156529003|gb|ABU74088.1| hypothetical protein VIBHAR_06196 [Vibrio harveyi ATCC BAA-1116] Length = 456 Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 109/406 (26%), Positives = 184/406 (45%), Gaps = 47/406 (11%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI L+ + + + V +S+P AD V + T+ +F +GQA +I+ G D +L Sbjct: 34 SITLHDGQHISLKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQARLIVYGIDEDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ D+ + ++ D+ + V+ + + V + G V + + L T L + Sbjct: 94 SDRIIVDLDLTDVRRQIKFNFPDAKVTVQSIGEQVAVSGFVDSEETRDEIYRLVATLLGR 153 Query: 171 SGRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ N S + ++ + +A QV +K+++A+V Sbjct: 154 EKIKKWDKADKFEFKSDYAQYEAPEGMIFARNMSWRGIVERIEVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 K +G S GSS G V D + T++ AL Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 LAEP LT +SG+SASF GG+ S+ +++ ++G+ L T VLS Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPVII--STNNNVNISFKEFGIKLDLTAKVLSKD 312 Query: 327 RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I +++ EVSE V A + P R+A TTVEL G + +L GL+ + + Sbjct: 313 KIRMQLAPEVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + IPILGA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 373 IPFVGDIPILGAAFRKAMTERKRTELIIVATVNLVEPIKPKDVQLP 418 >gi|238793622|ref|ZP_04637245.1| Type II/III secretion system protein [Yersinia intermedia ATCC 29909] gi|238727037|gb|EEQ18568.1| Type II/III secretion system protein [Yersinia intermedia ATCC 29909] Length = 425 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 113/439 (25%), Positives = 194/439 (44%), Gaps = 34/439 (7%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V K + + + I++ ++ V VS AD + ++ ++ K G A IL Sbjct: 12 VNQAYAKPVYLSSGESYIIKTEEEIDTVFVSTAAIADYELVGKNSIIVYAKKEGTAEFIL 71 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 D M+ I++ I ++ DSN+ + + ++ +L G + + Sbjct: 72 FNKDNHPMIKTTIMVNDIITSAYQRIKIEYPDSNVEINKIGNSYLLTGKAESEEAKDTIA 131 Query: 162 ELSETFLSQSGRN-----QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + +++ + N + V+N + + +QV +K+TIAEV +D + IG Sbjct: 132 AIIGEAINKKREQNREDQHFNNPNYLGVINKIKLPESNQVNVKLTIAEVTKDFSENIGVD 191 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 S +S S F + T++HA+ + R LAEP Sbjct: 192 WSSISEASVGSFKFL------------------KFNATGISTLVHAINDDSIARVLAEPN 233 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L+ +SG+SASF GG+ +++ +T + YG+ L+ V RI + ++ EV Sbjct: 234 LSVLSGESASFLVGGEIP--MFNTNQNSTIIKYKTYGIKLNIAAKVNEKNRIRISMEEEV 291 Query: 337 SEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 S N PS R RKA TT+EL G + +L GL+ ++ + IP + IPI Sbjct: 292 SSVDKVFNVEGGNAYPSLRTRKAATTLELGDGESFILGGLISKSERESLKKIPFIGDIPI 351 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LGA FRN++ +++TE+ + AT LV PVA +D+ P D + F F + ++ Sbjct: 352 LGAFFRNAQTQKQQTELVVVATVSLVNPVAGKDVELP-DFMHTSTLERLFNFTHIIEVKR 410 Query: 454 PKEASEVEGQNYKGAIGFI 472 K A E + GFI Sbjct: 411 KKVAKEFLRKG-----GFI 424 >gi|89899603|ref|YP_522074.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89344340|gb|ABD68543.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 571 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 132/531 (24%), Positives = 223/531 (41%), Gaps = 96/531 (18%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 ++ P ++A + S V I + I + K +L+ V +L+ +P Sbjct: 34 TAAKLPAPATAPARQALSTTGLCSRVNIAPA--VLIPVGKSTVLRPSSPVTRILLGNPEN 91 Query: 77 A-------------------------------DVVVHSPRTMYLFGKNVGQANVILIGHD 105 A DV++ +P +YL GK +G NV+++ D Sbjct: 92 ARAARPADTPEGKKEEGVKTPSVNTRPGVADVDVLLLAPTEVYLLGKTIGTTNVVMLDRD 151 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 G D+++ D L+ + + + + I+V D++VL GMV + R +L+ Sbjct: 152 GTC-TAFDVVVAMDTMALQAVIGQLLPIEKEIKVTSAFDSIVLSGMVSDTEALTRVTDLA 210 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------ 218 ++ S+++V+N+L + QV L+V +AE+ + +L Q G S Sbjct: 211 NAYVRG---QDGGGQSNQRVVNMLEVGAPQQVMLEVKVAEISKSLLDQFGINFSRAYVPG 267 Query: 219 -----------------------ITGSSSGPSKSFAADFGGKFV---SEGGDFSV----- 247 TG+S P S A GG + GG+ +V Sbjct: 268 DGSMMRFLSGIFGGAVGAMGQISGTGASGVPFSSVDAVIGGTVPIAGASGGNVTVTYDAT 327 Query: 248 ----------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 V R L+ + ++ LAEPT+ AISGQ+ SF +GG+ Sbjct: 328 TGRPTYTTSYGTVPGRGVSNATLNMQKNDGLVKVLAEPTIMAISGQTGSFLAGGKIFIPV 387 Query: 298 V---SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-------EPVIGVNAGD 347 S T++ ++GV + FTPTVL GRI LR++ EVS + G Sbjct: 388 SKDNGSGGSTTTLEEKEFGVSVRFTPTVLGSGRINLRVRPEVSELNVAGVQISSGGLNAV 447 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +PS+ RKA+TTV+L G + + GL+K++ P L ++P++GALFR++ F + Sbjct: 448 LPSFTSRKAETTVQLMDGQSFAIGGLIKNNTTTNINAFPFLGELPVVGALFRSTEFQTDR 507 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 +E+ TP LVKP+ + P D Y ++ ++ AS Sbjct: 508 SELVFVITPRLVKPLPVG-YRLPTDGYVPPSRSELILGGKLEGQRTDDAAS 557 >gi|302391029|ref|YP_003826849.1| type II and III secretion system protein [Acetohalobium arabaticum DSM 5501] gi|302203106|gb|ADL11784.1| type II and III secretion system protein [Acetohalobium arabaticum DSM 5501] Length = 414 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 105/380 (27%), Positives = 179/380 (47%), Gaps = 27/380 (7%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 + K + +G K +L+V VD++ V+DP AD+V S + + GK+ G + L Sbjct: 29 SQQKILQLGTGKSELLKV-VDLERAAVADPEVADIVTISQEELLINGKSEGTTTLHLWDQ 87 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 G + + + + ++ A + ++ I ++V V + ++L G VR QR +++ Sbjct: 88 KGHR--SYQVEVYKEEARVIKQIKELIGTDTVKVAKVEENIILSGKVRDQTQLQRVKKIA 145 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 F +KV+N L + QV L + E+ + + +++GF T +S Sbjct: 146 GVF-------------GEKVINELQVTNSLQVLLAAQVFEIDKAVSEELGFDWYST--NS 190 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G +S A G S F + + T L AL + LA+P L SGQ Sbjct: 191 GGVESGTATLGETTTSR---FGIGHYERLYQLRTKLKALIEDGKAKLLAKPKLVTKSGQK 247 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----P 339 ASF GG+ T SS G +V +YGV PTV G++ + +VS+ Sbjct: 248 ASFNVGGEIPVVTADSS-GEQTVVWKNYGVQFEVEPTVTPTGKLETYLHPKVSQLDWANA 306 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V N+G +P+ + + T V + G + + GLL+ + + IPLLS++PILG LF+ Sbjct: 307 VDYGNSGQLPAIKSSEVKTQVVIKDGAALAIGGLLQQYRSEDIKRIPLLSQLPILGELFK 366 Query: 400 NSRFNREETEIFIAATPFLV 419 + F E++E+ I TP ++ Sbjct: 367 SKSFREEKSELIILVTPKII 386 >gi|119566857|gb|ABL84265.1| RcpA [Yersinia ruckeri] Length = 438 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 109/433 (25%), Positives = 192/433 (44%), Gaps = 34/433 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + + + I+ V ++ + S AD + ++ ++ K G A L Sbjct: 32 AEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKKN 91 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 K + + + +++ I+ + +R DS I + + + +L G +T + + ++ Sbjct: 92 KPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVAN 151 Query: 167 FLSQSGRNQ----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + Q Y S + N + I +QV +K+TIAEV +D IG S G+ Sbjct: 152 AIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIGN 211 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 SG + G T++ A+ + R LAEP L+ +SG Sbjct: 212 VSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLSG 252 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 ++ASF GG+ VS++ +V+ ++G+ L+ V RI +++ EVS Sbjct: 253 ETASFLVGGELPI--VSTTQNTINVSYKEFGIKLNIGAKVSESKRIRVKLDEEVSSLDKM 310 Query: 343 VN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 N P+ R RKA TTVEL G + +L GL+ + ++ + IPL+ IPILGALFR Sbjct: 311 FNVDGGSSYPALRTRKAGTTVELGDGESFILGGLISREDKENLKKIPLIGDIPILGALFR 370 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + + +E+ + AT LVKP+ +D+ PD + + FF N + + E Sbjct: 371 KTGTQTKRSELVVIATVNLVKPMQSKDVGLPD--FMKTSTLERFF----NYTFIRESKQE 424 Query: 460 VEGQNYKGAIGFI 472 + + GFI Sbjct: 425 KLAKKFLSQGGFI 437 >gi|85707702|ref|ZP_01038768.1| type II secretion system protein [Erythrobacter sp. NAP1] gi|85689236|gb|EAQ29239.1| type II secretion system protein [Erythrobacter sp. NAP1] Length = 576 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 126/477 (26%), Positives = 217/477 (45%), Gaps = 67/477 (14%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + +I I + + ++QVP + DV V++ ADV + S R +Y+FG++ G+ + Sbjct: 62 VSPSDEIVISIGRGELVQVPGTMTDVFVANENVADVQIKSQRQLYVFGRSGGETTIYASD 121 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVE 162 G+ + + ++ + +I ++ L + ++ + V + +TV+L G V +D+ A Sbjct: 122 ARGEVIFSANVRVGSNIGSIDQMLALAMPEAQVNVATMGTNTVLLTGTVAAPEDAAEAER 181 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 L FL + V+ L A QV L+V AEV R +++ + + + Sbjct: 182 LVTAFLGEQA----------NVITRLKTATPLQVNLQVKFAEVSRSLVRAVSGNLTTFDA 231 Query: 223 SSGPSKSFAAD------------------------------------------------- 233 S+G + Sbjct: 232 STGGFRGAVGTGRTLGAGEFDFRNGPLGVGSGVQNPVVGPFIDPTTGLPILDANGNPLTF 291 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETV--LHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G S ++ G+ F + + L ER I T+++P LTA+SG++A+F +GG Sbjct: 292 TGPGIDSGTAGTTIAGLGRLFGLDALGALDLSERLGLITTISQPNLTALSGETATFLAGG 351 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGD 347 + +S G ++ ++GV L +TPTVLS GRI +R++ EVSE + +N Sbjct: 352 EFPIP-ISQGLGNVAIEYRNFGVSLAYTPTVLSNGRISIRVRPEVSELSSQGAVTLNGFQ 410 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P+ +R+ +TTVEL SG + ++AGLL ++ Q + P L +PILG LFR+ F R E Sbjct: 411 VPALTIRRTETTVELGSGQSFMIAGLLSNNAQNALDKAPGLGDVPILGNLFRSRDFRRGE 470 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 TE+ I TP+LVKPV D++ P D Y ++ + F R N + Sbjct: 471 TELVIVVTPYLVKPVNASDIALPTDGYHSANELEQFIGFRDNDGVSGERRPGPTAAE 527 >gi|238755450|ref|ZP_04616790.1| Type II/III secretion system protein [Yersinia ruckeri ATCC 29473] gi|238706291|gb|EEP98668.1| Type II/III secretion system protein [Yersinia ruckeri ATCC 29473] Length = 430 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 109/433 (25%), Positives = 192/433 (44%), Gaps = 34/433 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + + + I+ V ++ + S AD + ++ ++ K G A L Sbjct: 24 AEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKKN 83 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 K + + + +++ I+ + +R DS I + + + +L G +T + + ++ Sbjct: 84 KPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVAN 143 Query: 167 FLSQSGRNQ----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + Q Y S + N + I +QV +K+TIAEV +D IG S G+ Sbjct: 144 AIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIGN 203 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 SG + G T++ A+ + R LAEP L+ +SG Sbjct: 204 VSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLSG 244 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 ++ASF GG+ VS++ +V+ ++G+ L+ V RI +++ EVS Sbjct: 245 ETASFLVGGELPI--VSTTQNTINVSYKEFGIKLNIGAKVSESKRIRVKLDEEVSSLDKM 302 Query: 343 VN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 N P+ R RKA TTVEL G + +L GL+ + ++ + IPL+ IPILGALFR Sbjct: 303 FNVDGGSSYPALRTRKAGTTVELGDGESFILGGLISREDKENLKKIPLIGDIPILGALFR 362 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + + +E+ + AT LVKP+ +D+ PD + + FF N + + E Sbjct: 363 KTGTQTKRSELVVIATVNLVKPMQSKDVGLPD--FMKTSTLERFF----NYTFIRESKQE 416 Query: 460 VEGQNYKGAIGFI 472 + + GFI Sbjct: 417 KLAKKFLSQGGFI 429 >gi|238789148|ref|ZP_04632936.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC 33641] gi|238722680|gb|EEQ14332.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC 33641] Length = 415 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 116/435 (26%), Positives = 202/435 (46%), Gaps = 34/435 (7%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 K + + + I+ ++ V VS AD + ++ ++ KN G A L H Sbjct: 7 ANAKPVYLSAGESYIINTQDEINTVFVSAAAIADYELIGKNSIIVYAKNEGVAEFTLFNH 66 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 D K + +L+ I + ++ +SNI + + + +L G+V + + V + Sbjct: 67 DHKAITKSVVLVNNIIPSVHRRIQAEYPESNIDINKIGSSYILTGLVESEEVRDTVVNII 126 Query: 165 ETFLSQSGRNQ----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + N N++ ++N + ++ +QV +K+TIAEV +D + IG S Sbjct: 127 GEAIGSKRINNDRHPVGNTNHTNIINKIKLSQSNQVNVKLTIAEVTKDFTENIGINWSTI 186 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S G + F F+ KG+ T++HA+ R LAEP L+ + Sbjct: 187 GESVGSFQLF-------------KFNAKGI------STLVHAINDNAIARVLAEPNLSVL 227 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 SG+ ASF GG+ V+++ ++V+ ++G+ L+ V RI + + EVS Sbjct: 228 SGEDASFLVGGEIPI--VNTTQNGSAVSYKEFGIKLNIGAKVNDKKRIRIILNEEVSSIG 285 Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 N PS R RKA TT+EL G + +L GL+ + ++ + IPL+ IP+LGA Sbjct: 286 KTFNINGGDSYPSIRTRKAATTLELGDGESFILGGLISRNERESLKKIPLMGDIPLLGAF 345 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 FRN++ + +TE+ + AT LV PVA +++ PD + + FF N + + Sbjct: 346 FRNAQTEQSQTELVVIATVNLVNPVAEKEVELPD--FMQTSTLERFF----NFTHIMEIK 399 Query: 458 SEVEGQNYKGAIGFI 472 E + + GFI Sbjct: 400 REKAARAFLRKGGFI 414 >gi|54309660|ref|YP_130680.1| Flp pilus assembly protein [Photobacterium profundum SS9] gi|46914098|emb|CAG20878.1| hypothetical Flp pilus assembly protein [Photobacterium profundum SS9] Length = 461 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 114/403 (28%), Positives = 181/403 (44%), Gaps = 45/403 (11%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 I LN L+ P ++ V VS P D V R + +F +GQA VI+ G + + +L+ Sbjct: 34 ITLNDANNLEFPQEIGTVFVSQPDILDYKVIDNRKLVIFSNKIGQAKVIVYGKENQVLLS 93 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 ++ +++ + L+ + D NI V V + V + G V + + T L + Sbjct: 94 QRYHVDINLSQVRRQLKLYYPDLNISVSSVGEQVAVRGTVNNEKQRDDIYRMVATLLGKK 153 Query: 172 GRNQY----------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 +Y N + ++ L IA QV +K+++A+V ++ Sbjct: 154 EIERYNEAEKLKFVESGFEEANWVRYSKNYIWEGIVEGLVIAQAQQVNVKISVAQVTKEF 213 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + IG S G S G TV++A+ Sbjct: 214 NETIGVDWSTVGRSVGEFSFL-------------------KFKANDLSTVINAIGNDNIA 254 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 LAEP LT +SG+SASF GG+ ++ +T+++ ++G+ L + VLS I Sbjct: 255 EILAEPNLTVLSGESASFLVGGEVPVIV--TNDNSTNISFKEFGIKLELSAKVLSNKSIK 312 Query: 330 LRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L++ EVS V A + P R+A TT++L G + +L GL+ D + IPL Sbjct: 313 LQLAPEVSAVEGYVKAAGIEVPQLSSRRAMTTIQLADGDSFMLGGLMSSDDIEEISKIPL 372 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 L IPILGA FR S R++TE+ I AT LVKPV+ D+ P Sbjct: 373 LGDIPILGAAFRKSSTTRKKTELVIVATVNLVKPVSPTDVRLP 415 >gi|90412176|ref|ZP_01220182.1| hypothetical Flp pilus assembly protein [Photobacterium profundum 3TCK] gi|90326900|gb|EAS43285.1| hypothetical Flp pilus assembly protein [Photobacterium profundum 3TCK] Length = 461 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 112/403 (27%), Positives = 183/403 (45%), Gaps = 45/403 (11%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + LN L+ ++ V VS P D V R + +F +GQA VI+ G D + +L+ Sbjct: 34 VTLNDANNLEFSQEIGTVFVSQPDILDYKVIDSRKLVIFSNKIGQAKVIVYGKDNQVLLS 93 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 ++ +++ + L+ + D +I V V + V + G V + + T LS+ Sbjct: 94 QRYHVDINLSQVRRQLKLYYPDLSISVTSVGEQVAIRGTVNNEKQRDDIYRMVATLLSKK 153 Query: 172 GRNQY----------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 +Y N + + ++ L +A QV +K+++A+V ++ Sbjct: 154 EIERYNEAEKLKFVESGFEEANWVRYSKNYTWEGIIEGLVVAQAQQVNVKISVAQVTKEF 213 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + IG S G S G TV++A+ Sbjct: 214 NETIGVDWSTVGRSVGEFSFLE-------------------FKANDLSTVINAIGNDNIA 254 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 LAEP LT +SG+SASF GG+ ++ +T+++ ++G+ L + VLS +I Sbjct: 255 EILAEPNLTVLSGESASFLVGGEVPVIV--TNDNSTNISFKEFGIKLELSAKVLSNKKIK 312 Query: 330 LRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L++ EVS V A + P R+A TT++L G + +L GL+ D + IPL Sbjct: 313 LQLAPEVSAVDGYVKAAGIEVPQLSSRRAMTTIQLADGDSFMLGGLMSSDDIEEISKIPL 372 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 L IPILGA FR S R++TE+ I AT LVKPV+ D+ P Sbjct: 373 LGDIPILGAAFRKSSTTRKKTELVIVATVNLVKPVSPTDVRLP 415 >gi|148975962|ref|ZP_01812751.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium SWAT-3] gi|145964707|gb|EDK29960.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium SWAT-3] Length = 456 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 108/406 (26%), Positives = 187/406 (46%), Gaps = 47/406 (11%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN +Q + V +++P+ D + + T+ +F +VGQ+ +I+ G D +L Sbjct: 34 SITLNDGQHIQFKSPIGQVFINNPSIVDYKIINDNTLVVFANSVGQSRLIVYGVDDDVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ ++ + L+ D+ ++V+ V + V + G+V + L T L + Sbjct: 94 SDRIIVDLNLTDIRRQLKFHFPDAKVKVQSVGEQVAVSGVVDSEATRDDIYRLVATLLGR 153 Query: 171 SGRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ N + + ++ + +A QV +K+++A+V Sbjct: 154 DKTEKWDKTQKLEFKSDSSDYEEPESMVFARNMTWEGIIERIEVATTQQVNVKISVAQVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + +G S GSS G V D + T++ AL Sbjct: 214 ESFGQTVGVDWSTVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 LAEP LT +SG+SASF GG+ +SS +++ ++G+ L T VLS Sbjct: 255 QIAEVLAEPNLTVLSGESASFLVGGEVPVIVSTSSN--VNISFKEFGIKLDLTAKVLSQD 312 Query: 327 RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I +++ EVSE V A + P R+A TTVEL G + VL GL+ + + Sbjct: 313 KIRMQLAPEVSEVEGYVEAAGIKVPQLASRRAMTTVELADGDSFVLGGLMSSADLEKMQK 372 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP + IP+LGA FR + R+ TE+ I AT LV+P+ +D+ P Sbjct: 373 IPFVGDIPVLGAAFRKATTERKRTELIIVATVNLVEPMKPKDIQLP 418 >gi|325108090|ref|YP_004269158.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] gi|324968358|gb|ADY59136.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] Length = 714 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 112/469 (23%), Positives = 198/469 (42%), Gaps = 39/469 (8%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDV--EIGKGKKISIGLNKVII 59 R R + L + + A + ++ + ++S+ + Sbjct: 22 RVFGRVLSVNTAALLLLGSLVCVQPSSASGQTHAPVTEGEIYHVLSATNQLSLTERFSRV 81 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 L++ + V DP V +P + + + G ++L+ K +++ +E D Sbjct: 82 LELEKRITRVDGFDPAVLTVSALTPHRVRIQAVSAGVTTLVLVDEFDKT-YTIEVFVEGD 140 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + +L+ + RF DS+++ V D+VVL G+V + E++E F Sbjct: 141 VRYLQSYIDRFFPDSSVKAVKVKDSVVLRGVVADPSHISQITEVAEQFF----------- 189 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236 KV+N + +QV L+V I E +R ++Q+GF S +G S S ++ G Sbjct: 190 --PKVINHMQFGAANQVRLQVRIMEAQRSRIRQLGFNWSFLNGSGYVSSNPGSLSSPLGA 247 Query: 237 KFV---SEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + G + G+ D F L AL++ +R L E ++ A SG+ Sbjct: 248 NLTPGQTPGLSYGGAGLSDSSISFGVVNANSVFRGFLEALKQEGLLRILVETSVVADSGR 307 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339 AS SGG+ V + G SV ++GV L P VL G++ L I E SE Sbjct: 308 PASLLSGGEFPI-LVPQALGTLSVEWKEFGVKLEAVPIVLGQGQVILEIAPEFSERDFAN 366 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ +P+ R+A+T V + G T+++ GL+ + +P L ++P +GA FR Sbjct: 367 AAQLDNTTVPAITTRRANTQVRMKFGQTLMIGGLIATRYTAETDKVPFLGELPGIGAAFR 426 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFN 446 R++ ETE+ I TP V P+ + P V D + F+ Sbjct: 427 RVRYDENETELIILVTPEYVAPLDPHQVPDGGPGQFSDVPTDRELFWQG 475 >gi|32473554|ref|NP_866548.1| outer membrane channel for pilus assembly CpaC [Rhodopirellula baltica SH 1] gi|32398234|emb|CAD78329.1| putative outer membrane channel for pilus assembly CpaC [Rhodopirellula baltica SH 1] Length = 589 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 115/457 (25%), Positives = 199/457 (43%), Gaps = 33/457 (7%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 T + + S + V A+AA + + + +++ + + IL + + Sbjct: 21 LATAFGLAMLSVSQPVMAQSATTLASAAGDHQINQTV---ERMDLIVKSSRILSLGERIP 77 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 V + S + +FGK G + L + K + +D+ + D +E L Sbjct: 78 RFQVHNEEVLGATPVSENQIQVFGKTPGTTQINLWDTEDK-LYTIDVTVVADAREVEGIL 136 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + +++RV + ++ ++ G V ++ D +AV ++E F + V+N Sbjct: 137 NSQLPLASLRVTPIGESAIISGYVTSVDDVDKAVAITEQFYT-------------TVINN 183 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGDF 245 + + G QV L I EV R L+++G +I + S D G V F Sbjct: 184 IQVVGIQQVLLHTKIMEVSRTKLRELGVDLAILDDNFTLLNGPSGVLDVGAGIVEGDAGF 243 Query: 246 SVKGVLD-------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + D +FET+++AL + LAEPT+ A G+ A FT GG+ V Sbjct: 244 GPIPLGDTNLRFNVNGNFETLINALHEQRLTKLLAEPTVVATHGRPARFTVGGRIP-TIV 302 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVR 354 G +T DYG + F P V+ PGRI L ++ EVSEP + VN ++ ++ R Sbjct: 303 PGQNGQVQITYEDYGTSIDFLPFVVGPGRIRLEVRPEVSEPDPSRAVTVNGTNVTAFTTR 362 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +T VE+ +G T LAGLL+ + P +P +G LFR + R E E+ I Sbjct: 363 YVETAVEMQAGQTFALAGLLQSRTESTTSRTPFFGSLPYVGTLFRKMQERRNEIELLILV 422 Query: 415 TPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN 449 TP LV+ + ++ R P + DD + + + + Sbjct: 423 TPELVEAMDPHEVPRGGPGMNSHSPDDKEFYLYGHIE 459 >gi|261867455|ref|YP_003255377.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412787|gb|ACX82158.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 420 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 99/403 (24%), Positives = 178/403 (44%), Gaps = 25/403 (6%) Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++Q + + VS P AD + T ++ K G+ V G DG+ + + + ++ Sbjct: 1 MVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 60 Query: 119 ---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS----------- 164 IA L+ ++N+ V+ V V+ G R+ ++S + Sbjct: 61 VVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKVT 120 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 ET L + V++ NIA Q+ +K+++ EV + + + +G S S Sbjct: 121 ETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHVAG-S 179 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 GP FGG F G LD ++AL+ + + LAEP ++ +SG++ Sbjct: 180 GPLVGGNFGFGGGFNGNQGVL----RLDAKGISAFINALDNQSNGKVLAEPNISMLSGET 235 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A GG+ + G+ ++ ++G+ L + RI L + VS N Sbjct: 236 ADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNYN 294 Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G++P + RKA + E+ +G + ++ GL + + +PLL IPILG+ FR++ Sbjct: 295 FDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRSA 354 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 R++ E+ I AT +VKPV +D+ PD + + FF Sbjct: 355 TTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKTGTMERFF 395 >gi|87308911|ref|ZP_01091049.1| probable type II secretion system protein [Blastopirellula marina DSM 3645] gi|87288254|gb|EAQ80150.1| probable type II secretion system protein [Blastopirellula marina DSM 3645] Length = 540 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 118/496 (23%), Positives = 206/496 (41%), Gaps = 53/496 (10%) Query: 1 MRYLQRTFFTMMSIFLFSS---------NPSVAKLPPIKEANAAVI----NISDVEIGKG 47 MR L T+ I P+ +L + NAA + ++ D + Sbjct: 3 MRNLSTALATLAMILSAGGIAFGQAQEILPAPNQLEQLSSPNAATLQKQFDLIDEVLEPE 62 Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI--GHD 105 S+ ++ I++ V V +++P +V SP M + G VGQ + L D Sbjct: 63 LIFSLMTSQSKIVRTKSPVFRVAITNPAVVEVNEFSPTEMEVIGSAVGQTTMTLWFNNAD 122 Query: 106 GKQ-MLNLDILIERDIAH-------LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 G L I++ D L+ + S +++ ++D +++ G R +++ Sbjct: 123 GTVSTLRYLIIVSNDDNRADLEYGKLQAHINEMFPYSRVQLFPIADKLIVRGQARDSKEA 182 Query: 158 QRAVELSETFLSQSGRNQYANSSSK----------------KVMNLLNIAGEDQVTLKVT 201 + + N + + ++NLL + GE QV LKV Sbjct: 183 AEILAVIGDQAVNQNGNISGSGTVNVGSVARLPDAEDLETTSLINLLEVPGEQQVMLKVR 242 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 +AE+ R +++G S+ S + + GG ++ +LD E + Sbjct: 243 VAELSRQAARELGMDFSVMEESFSIAHTIM----------GGAGNLSAILDGGDVELFIR 292 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTHDYGVVLHFT 319 A + + LAEPTL +SGQSASF +GG+ T GA S + +G + F Sbjct: 293 AFSSNGSAKILAEPTLMTLSGQSASFIAGGEFAVPTAVGVGGIGAVSTSFRGFGTQVQFM 352 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 PTV+ I L + VS ++ +P +R A TTV+L G + +AGL++D+ + Sbjct: 353 PTVMDKDMIRLSVAPSVSSINQSLSVDGVPGLDIRGAVTTVDLREGQWLAIAGLIQDEQE 412 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVE 437 + +PLL IP +GA F + R ETE+ I +P LV P+ + P + Sbjct: 413 ASRSRLPLLGDIPYVGAAFGSQTTKRIETELVILVSPELVHPMERDQVPLYLPGMEVTEP 472 Query: 438 DDAKAFFFNRVNKIYG 453 + + F ++ + G Sbjct: 473 TNKEFFLHQQIEGLPG 488 >gi|37676253|ref|NP_936649.1| rough colony protein RcpA [Vibrio vulnificus YJ016] gi|326424174|ref|NP_762071.2| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus CMCP6] gi|37200794|dbj|BAC96619.1| rough colony protein RcpA [Vibrio vulnificus YJ016] gi|319999557|gb|AAO07061.2| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Vibrio vulnificus CMCP6] Length = 441 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 112/452 (24%), Positives = 199/452 (44%), Gaps = 43/452 (9%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 I + + + + +++ + + + V V P AD + + ++G +G Sbjct: 12 TIGVVSLSVNSNELMNLNQGSAKTISLKRQISTVFVGAPEIADYKIIDETKVVVYGVGLG 71 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 +VI+ G ++ N ++++ + + ++ TL D +I + V + VVL G+V + + Sbjct: 72 ATSVIVYDRAGNELYNAEVVVNKSLRLVKQTLIARFPDESINITNVGEQVVLDGVVSSEE 131 Query: 156 DSQRAVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTL 198 + L +S + A ++N L + +Q+ + Sbjct: 132 VKTQIYRTVGEMLKKSVTRNTLTLQDTSGGQVDSLDYTATYIYDNIINNLKVLTTEQINV 191 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 K+T+AEV L ++G +S +G G+FV++ DF+ + ++ Sbjct: 192 KLTVAEVSSSFLSELGVSYSDSGQ------------AGRFVNKLLDFTAQDIV------A 233 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 V+ A R LAEP L+ ISG++ASF GG+ S SV+ +YGV L Sbjct: 234 VITASGDDQIGRVLAEPNLSVISGETASFLVGGELPIAIRDES--GISVSYKEYGVKLSM 291 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLL 374 V I L + EVS + +P+ R RKA TTV+L G + VLAGLL Sbjct: 292 VAKVTDSENIRLSLLPEVSSIDEENKTANGLINVPALRTRKAQTTVQLKDGQSFVLAGLL 351 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 + ++ IP+L IPILGALF +++ N+ +TE+ I AT LV PV D+ P + Sbjct: 352 TSEERESLSKIPVLGDIPILGALFSHTKSNQTKTELIIVATVNLVDPVKAEDIKLP--SF 409 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 D + ++ + P+ + + Sbjct: 410 RRTSDIERLLRIDLSSMNEPELEDTLNKGGFN 441 >gi|262173894|ref|ZP_06041571.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus MB-451] gi|261891252|gb|EEY37239.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp pilus assembly [Vibrio mimicus MB-451] Length = 419 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 110/439 (25%), Positives = 190/439 (43%), Gaps = 42/439 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ + + + V V+D T AD + + ++G G +VI+ G ++ Sbjct: 1 MNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGGNEI 60 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N ++++ + + L+ TL D +I V V D VVL G V + + + L L Sbjct: 61 YNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLK 120 Query: 170 ------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + A V+N L + +Q+ +K+TIAEV L Sbjct: 121 KNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLS 180 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 ++G + G GKF ++ DF+ + ++ ++ A + Sbjct: 181 ELGVSYGDIG----------GGDVGKFYNKLLDFTAQDIV------AIIAASGNDDIGQV 224 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 LAEP L+ ISG++ASF GG+ T ++ +YG+ L V I L Sbjct: 225 LAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLS 282 Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + EVS ++ + PS + RKA TTV+L G + VLAGLL + ++ IP+ Sbjct: 283 LLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPI 342 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L IPILGALF +++ +R++TE+ I AT LV PV + P + D + Sbjct: 343 LGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLLRID 400 Query: 448 VNKIYGPKEASEVEGQNYK 466 ++ + P+ + + Sbjct: 401 LSGVDEPELQRTINAGGFN 419 >gi|197118220|ref|YP_002138647.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem] gi|197087580|gb|ACH38851.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem] Length = 494 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 120/465 (25%), Positives = 197/465 (42%), Gaps = 64/465 (13%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V + +N+ +++ + + V ++ P A++VV SP + + GK VG +I+ Sbjct: 24 VAAHAAVTTEVVVNRSVLVDLHTKSERVSIASPDVAELVVISPTQLQINGKKVGSTTLIV 83 Query: 102 IGHDGKQMLNLDILIERD-------IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 GK D+ ++R+ I L+ +++ NI+V+ +DT+VL G Sbjct: 84 WDTAGKTSF-FDVRVKRNESVLESQIEALQDQIQQMAPKDNIKVDYANDTIVLSGTAANE 142 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSK---------------------------KVMNL 187 Q +A++L++ + + +G A ++ V+N Sbjct: 143 QTVAKALQLAQAYTAGNGSKAGAPATDPPLDTSRSSYQLSETQTGRQGGDADTVITVLNH 202 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 + I QV L+V +A+V + LK +G I G+S+ + G+ + D SV Sbjct: 203 VEIVEPQQVLLEVKVAQVDKTALKSLGISAFIRGASAEGFSNLVGAPVGELAIKNPDGSV 262 Query: 248 KGVLDRFS-------------------------FETVLHALERATAIRTLAEPTLTAISG 282 + + VL AL + LAEP L SG Sbjct: 263 RSQATGIAGPIPGLANFTPIDSYQLGVSSFKAGIGAVLRALVTKNLAKVLAEPNLMVQSG 322 Query: 283 QSASFTSGGQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEP 339 Q F +G + Y VS ATS+ D GV L+F P VL G I L+I EVS Sbjct: 323 QVGKFLAGSKIPYSIVSGVGALSATSIQFIDVGVKLNFKPEVLENGLISLKIDPAEVSSI 382 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + P R+ T V+L G +++LAGLL+++ + IP+L IPILGALFR Sbjct: 383 TGVLAVNGYPIIDTREVRTRVKLKDGESLILAGLLQEEAIKAMSKIPILGDIPILGALFR 442 Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAF 443 +++ + +E E+ TP LV A + P D + K Sbjct: 443 STQDDIKEKELVFFITPKLVTASAPGSRILLPTDKPLTPEQEKEL 487 >gi|84385704|ref|ZP_00988735.1| rough colony protein RcpA [Vibrio splendidus 12B01] gi|84379684|gb|EAP96536.1| rough colony protein RcpA [Vibrio splendidus 12B01] Length = 447 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 114/406 (28%), Positives = 187/406 (46%), Gaps = 36/406 (8%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +S+ + + ++ V V++ AD + + + ++G G ++I Sbjct: 23 ASELLSLDQGGAKTINIKRNIDTVFVANSQIADYKIIANGKLVIYGIGRGATSIIAYDRA 82 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G ++ N ++++ + + L+ TL D NI++ + + VVL G+V + + L Sbjct: 83 GNEIYNAEVVVNKSLRLLKQTLVARYPDENIKLTNIGEQVVLDGVVSSEEVKANVYRLVG 142 Query: 166 TFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 + +S + A + ++N L + +Q+ +K+T+AEV Sbjct: 143 EMMKKSKERHTFELSGANGESVDALDFTATYVFQDIINNLKVLTTEQINVKLTVAEVSSS 202 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L ++G ++ S + G FV++ DF+ + ++ V+ A Sbjct: 203 FLTELGVSYA-------ESNGKSIGGAGTFVNKILDFTAQDIV------AVISASGNDNI 249 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 R LAEP L+ ISG+SASF GG+ S+T +YGV L V I Sbjct: 250 GRVLAEPNLSVISGESASFLVGGEIPIAV--RDNDGVSITYKEYGVKLSMVAKVTDSENI 307 Query: 329 GLRIQTEVSEP--VIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L + EVS GVN+G +PS R RKA TTV+L G + VLAGLL + Q+ Sbjct: 308 RLSLLPEVSSIDKANGVNSGLISVPSLRTRKAQTTVQLKDGQSFVLAGLLTTEEQESLSR 367 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IPLL IPILGALF + R +TE+ I AT LV PV ++ P Sbjct: 368 IPLLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKEDEIKLP 413 >gi|156975620|ref|YP_001446527.1| Flp pilus assembly protein secretin [Vibrio harveyi ATCC BAA-1116] gi|156527214|gb|ABU72300.1| hypothetical protein VIBHAR_03353 [Vibrio harveyi ATCC BAA-1116] Length = 449 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 112/405 (27%), Positives = 190/405 (46%), Gaps = 47/405 (11%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 I ++ ++V + V VSDP D V + T+ +F K VGQA I+ G K +L+ Sbjct: 28 ITVSDGQHIEVKEPISTVFVSDPEIVDYNVVNENTVVVFAKEVGQARFIIYGKSKKVLLS 87 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 I+++ D++ + ++ + NI+VE V + V + G+V + Q + T L + Sbjct: 88 DRIIVDIDLSLVRRQIKLHYPELNIKVESVGNQVAVSGVVESEQQRDDIYRMVATLLGRD 147 Query: 172 GRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 ++ N + + ++ L+ +A + QV +K+++A+V Sbjct: 148 KTEKWEETQVLEFENEAYDIEEPQSMIFARNMTWEGILELIEVATDQQVNVKISVAQVTE 207 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + +G S G+ G + D T++ AL Sbjct: 208 TFSQTVGVDWSSVGADVGEF-------------------LFQQFDAADLTTLITALGNEN 248 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + LAEP LT ISG+SASF GG+ +++ ++T ++G+ L T VL G+ Sbjct: 249 VAQVLAEPNLTVISGESASFLVGGEVPVIVTTNNN--INITFREFGIKLDLTAKVLHEGK 306 Query: 328 IGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I +R+ EVSE + + +P + R+A TT+EL G + VL GL+ + + I Sbjct: 307 IRMRLMPEVSEVERYIRSAGLEVPQFATRRAMTTIELGDGDSFVLGGLMSSADLEELKKI 366 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 PLL IP+LGA FR + +R TE+ I AT LVKP+ +D+ P Sbjct: 367 PLLGDIPVLGAAFRKASTDRRRTELIIVATVNLVKPMKKKDIQMP 411 >gi|319940440|ref|ZP_08014785.1| type II and III secretion system protein [Sutterella wadsworthensis 3_1_45B] gi|319806066|gb|EFW02815.1| type II and III secretion system protein [Sutterella wadsworthensis 3_1_45B] Length = 530 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 128/495 (25%), Positives = 218/495 (44%), Gaps = 68/495 (13%) Query: 10 TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGK-----------KISIGLNKVI 58 T+ + + +A P A V V G + + L + Sbjct: 25 TVFAAACLGALLGLAVSPASAALKAQVPTDVKVLEGASSLKNLKLAKPTSSLRVFLKEGA 84 Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 +LQ+P VLV+ P A + SP ++ FG G + G + + + +E Sbjct: 85 LLQLPSAAAKVLVATPGIASYQMPSPDQVFFFGTAAGSTTFYALDEAGAVIAAVQVTVEH 144 Query: 119 DIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 ++ L+ ++R + ++I V +++ +++ G V+T DS+R +L E++L S Sbjct: 145 NLEKLKADIKRAVPSASIELVPALNNRMIVRGKVKTALDSRRVTQLVESYLVSSAAAGGP 204 Query: 178 NSSSKK------------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 S++ V+N L + QV ++V + EV R + +GF Sbjct: 205 GQGSQQGGQDGGGQGGSAGGQSSPVINQLKVEVSQQVNIQVRVVEVSRSLTHSLGFNWGA 264 Query: 220 ------------TGSSSGPSKSFAAD---FGGKFVSEGGDFSVKGVL------------- 251 G+S G + AA+ F G+ ++ G++ Sbjct: 265 VLNTGRGPLFLGNGTSQGLFSTHAANNSHFNPNDSFADGNANIPGLMPDSNTAGAALGGI 324 Query: 252 ---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 R S +++A+ + LAEP LTA+SGQ A+F SGG+ ++ + + ++ Sbjct: 325 FNMGRMSLGVLINAMSESGFASLLAEPNLTAMSGQPAAFASGGEVPIVIITGN--SITID 382 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDMPSYRVRKADTTVELP 363 +GV+L TPTVLSP RI + + EVSE VI +P+ RVR+A+TTVEL Sbjct: 383 YKSWGVILRMTPTVLSPNRIAIHVAPEVSELTSEGQVILSEGSVIPAVRVRRAETTVELA 442 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SG + LAG+L+ + Q G+P L +P +G LF + E++E+ I T +V PV+ Sbjct: 443 SGQSFALAGMLRSESSQTVNGVPGLRNLPFVGRLFEYEQTQVEDSELVILLTANIVDPVS 502 Query: 424 MRDLSRPDDHYSVED 438 DL P + D Sbjct: 503 SGDLRVPGRGINAVD 517 >gi|170724970|ref|YP_001758996.1| type II and III secretion system protein [Shewanella woodyi ATCC 51908] gi|169810317|gb|ACA84901.1| type II and III secretion system protein [Shewanella woodyi ATCC 51908] Length = 446 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 99/402 (24%), Positives = 186/402 (46%), Gaps = 44/402 (10%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + LN +++ ++ V +S P AD + + ++G+ +GQA + + + +L+ Sbjct: 29 VTLNDASSIELKQEIGTVFISQPEVADYKITGNNKLVIYGRQLGQARLFVYNKANEVILS 88 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 + ++ +++ + L+ F D ++ + V D V + G+V + + TFL + Sbjct: 89 QLLHVDINLSQIRRQLKLFYPDLDLTLTSVGDKVAVRGIVYSEEQRNDIYRQVATFLGRE 148 Query: 172 GRNQYANSS---------------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 ++ S + ++ L ++ QV +K+++A+V ++ Sbjct: 149 KVERFDESELVEFKDSFTEANWLAYERNFIWQGIIEGLRLSQTQQVNVKISVAQVTKEFN 208 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 + +G S G S G T+++AL + + Sbjct: 209 ETLGVSWSTVGRSVGEFSFLD-------------------FKASDLSTIINALGKDSIAE 249 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP L+ +SG+SASF GG+ + S+ T++T ++G+ L + VL+ +I L Sbjct: 250 VLAEPNLSVMSGESASFLVGGEIPV--IFSNNNTTNITYKEFGIRLDLSAKVLNNEKIKL 307 Query: 331 RIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 ++ EVS V A + P R+A TT+EL G + +L GL+ D + IPLL Sbjct: 308 QMMPEVSAVEGFVEAAGIKIPQLTTRRAMTTIELGDGDSFLLGGLMSSDELENVSKIPLL 367 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 IP+ GALFR + R++TE+ I AT LVKP++ ++ P Sbjct: 368 GDIPVFGALFRQAGTTRKKTELVIVATVNLVKPLSPTEVRLP 409 >gi|15602717|ref|NP_245789.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70] gi|12721161|gb|AAK02936.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70] Length = 470 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 98/424 (23%), Positives = 177/424 (41%), Gaps = 32/424 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 K ++ +++ + + VS P+ AD + + ++ K G+A V G DG Sbjct: 28 SKTFNLEQGGTKLVRTDEKIDTIFVSSPSVADYEILDDNSFIIYAKEEGRAEVTAFGQDG 87 Query: 107 KQMLNLDILIER------DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 K + I + DI+ ++ +SN+ V+ V V+ G RT ++S+ A Sbjct: 88 KPLTTDFINVNPLISNINDISDTNRQIKARFPNSNLSVKKVGKAYVIEGKARTQEESEEA 147 Query: 161 VELSETFLSQSGR----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 + L S + V+N ++A Q+ +K+++ E Sbjct: 148 HRIVGEALGNSKKVTETSFNRSEGVKEYIPFLDKYQFDGVINNASVADSTQINVKLSVVE 207 Query: 205 VRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 V + + + +G + G SGP + G ++ ++AL Sbjct: 208 VNKKLTEALGINWGRVVGVHSGPLLGGSVS---LSGGFSGSGGSTLNINATGVSAFINAL 264 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + LAEP+++ +SG++A GG+ + G+ ++ ++GV L V Sbjct: 265 NNQDNGKILAEPSISLLSGETADILVGGELPFAQ-KDKEGSATIIYKEFGVKLIVGAKVQ 323 Query: 324 SPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 RI L + VS N G +P + R+A + E+ G + ++ GL + Sbjct: 324 KNKRIRLALDQSVSTIAGSYAYDNVGTVPYFNTRRAKSIFEVADGESFIIGGLFSSQDAE 383 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 +PLL IPILG+ FRN+R +RE+ E+ I AT +VKPV D+ P + Sbjct: 384 GINKVPLLGDIPILGSFFRNARTDREDKELVIVATVNVVKPVHESDIVYPT--FEQTGTM 441 Query: 441 KAFF 444 + FF Sbjct: 442 ERFF 445 >gi|33152386|ref|NP_873739.1| rough colony protein A [Haemophilus ducreyi 35000HP] gi|21326707|gb|AAL92467.1| RcpA [Haemophilus ducreyi] gi|33148609|gb|AAP96128.1| rough colony protein A [Haemophilus ducreyi 35000HP] Length = 456 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 88/426 (20%), Positives = 190/426 (44%), Gaps = 24/426 (5%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 A++ + K ++ + +++ + + VS P AD + + L+ K Sbjct: 14 ALLGMFTFTPSLAKTFNLEQGQTKLIKTKTKIDTIFVSSPEVADYQILDDNSFMLYAKGE 73 Query: 95 GQANVILIGHDGKQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G+ +++ +G + + + +I+ ++ +SN+ V+ + V+ G Sbjct: 74 GKTEIVVFDFEGNALTEDVVSVNNMINNISETNQQIQTRFPNSNLTVKKIGKAYVVEGKA 133 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKV-----------MNLLNIAGEDQVTLKV 200 + +++ + + L N + ++V +N + Q+ +K+ Sbjct: 134 KNEAETEDVIRVVGEALGAGKNVTSKNLAGEQVPFLNNYQYEGIINNTTASDATQINVKL 193 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 T+AEV + +IG S + + + A GG F EGG ++ +++ + + ++ Sbjct: 194 TVAEVNKKFSDEIGIHWSNLSGNFFKNLTNLAIQGG-FGPEGGKLAL---VNQDNLQMLV 249 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 AL+ + + LAEP ++ +SG++A GG+ + G+ +V ++G+ L Sbjct: 250 TALDNQSNGKILAEPNISMLSGETADILVGGEVPI--IERKDGSPTVKYKEFGIKLAVGA 307 Query: 321 TVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 + RI L + EVS ++ +P + R++ +T E+ +G + +++GLL + Sbjct: 308 KLQKNDRIRLALSQEVSTIAGSFKLDQDSLPIFNTRRSKSTFEVGNGESFIVSGLLNKED 367 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 + +P L IPILGA FR++ +R E+ + AT LVKPV ++ P + Sbjct: 368 IESITKVPGLGDIPILGAFFRSANTSRGSKELVVIATVNLVKPVDGSEILYPT--FENTG 425 Query: 439 DAKAFF 444 + FF Sbjct: 426 TMERFF 431 >gi|197335194|ref|YP_002155269.1| general secretion pathway protein D [Vibrio fischeri MJ11] gi|197316684|gb|ACH66131.1| general secretion pathway protein D [Vibrio fischeri MJ11] Length = 436 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 113/409 (27%), Positives = 186/409 (45%), Gaps = 33/409 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 +++I + + + ++ + ++ V +S+P AD + + LFG+ VG Sbjct: 12 LLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYKVVLFGREVG 71 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 + I G+++LN I++ R+ + +E ++ S+I + + V+ G V + Sbjct: 72 DSVFIAFDVQGRELLNKKIIVSRNYSGIEQQVKLRFPTSDIDIFAIGTNAVVSGTVLNEE 131 Query: 156 DSQRAVELSETFLSQSGRNQYANSSS-----------KKVMNLLNIAGEDQVTLKVTIAE 204 D + E+ T L + A + V+N + +A QV +K+TIAE Sbjct: 132 DRDQIYEMVATLLFDDNADNNAQDDRTELTYMDKLNFEGVVNQIEVARTKQVNVKLTIAE 191 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V ++ G + G G FV + FS ++ V+ A+ Sbjct: 192 VSHSFMQDFGIKVGSNGQ------------AGIFVDQLVHFSASDIVS------VITAVG 233 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + LAEP L+ ISG+ ASF GG+ TV GAT+V ++GV L T V Sbjct: 234 TDSVGQVLAEPNLSVISGEDASFLVGGELPVVTV--IDGATNVQYKEFGVKLDLTAKVER 291 Query: 325 PGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 +I L + VS + +PS + R A TTVEL G + VL GLL + ++ Sbjct: 292 DDKIKLALAPSVSSLDTQYANDNYNLPSLKTRSARTTVELGDGQSFVLGGLLNSEEKESL 351 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 IP + IPILGALFR++ R +TE+ I AT LV+PV + P Sbjct: 352 TRIPFVGDIPILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPT 400 >gi|154250526|ref|YP_001411350.1| type II and III secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154476|gb|ABS61693.1| type II and III secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 461 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 109/438 (24%), Positives = 191/438 (43%), Gaps = 32/438 (7%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 P+ + + + + +SI + IL++ V + +++P+ DV V S R + Sbjct: 22 PMLAVLLTALLLPQGPVLAAETLSISIGGQRILKLGQTVDRIAIANPSIVDVKVISSREL 81 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 + G++ G ++ + G + +++ DI L+ L R A ++++ VVL Sbjct: 82 RILGQSEGTTDLDIWFAGGAS-KSYYVVVGADITGLQSELARDPALADVKATETGKGVVL 140 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V +++ QRA E++ ++L + ++L +A V ++V A V Sbjct: 141 KGQVYSLEAQQRAREIARSYLGKDAG------------DMLTVADRRMVAVEVRFAAVST 188 Query: 208 DILKQIGFQHSITGSSS-------GPSKSFAADFGGKF-----VSEGGDFSVKGVLDRFS 255 LK +G +S S SF G + F++ + Sbjct: 189 STLKALGLNFQSLDNSFQFAAIGPNASSSFGYTPGAGLDPDTSLPLSQAFNLFLAWPGSN 248 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYG 313 V+ AL A + LAEPTL SG+ A F +GG+ S G ++ +G Sbjct: 249 LLGVISALSSANLAQLLAEPTLLVRSGEDADFLAGGEIPIPVPQSGVGNGTVTIEYKKFG 308 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIV 369 V L TVL RI L++ EVSE V +P+ R R TT+EL G + V Sbjct: 309 VQLGVAATVLDNDRIVLKVSPEVSELDYTNALVVQGFRIPALRTRSTRTTIELGDGQSFV 368 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL-S 428 LAGL+ +++ IP + ++P++G F+ ++ RE E+ I ATP LV P+ ++ Sbjct: 369 LAGLMYSTSGNIEDRIPGIGELPVIGTFFKRTQNARERQELIIVATPRLVSPMEAGEVPP 428 Query: 429 RPDDHYSVEDDAKAFFFN 446 P + + + D N Sbjct: 429 LPGEGHVYDSDLGQNLLN 446 >gi|59711120|ref|YP_203896.1| general secretion pathway protein D [Vibrio fischeri ES114] gi|59479221|gb|AAW85008.1| general secretion pathway protein D [Vibrio fischeri ES114] Length = 436 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 112/409 (27%), Positives = 186/409 (45%), Gaps = 33/409 (8%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 +++I + + + ++ + ++ V +S+P AD + + LFG+ VG Sbjct: 12 LLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYKVVLFGREVG 71 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 + I G+++LN I++ ++ + +E ++ S+I + + V+ G V + Sbjct: 72 DSVFIAFDVQGRELLNKKIIVSKNYSGIEQQVKLRFPTSDIDIFAIGTNAVVSGTVLNEE 131 Query: 156 DSQRAVELSETFLSQSGRNQYANSSS-----------KKVMNLLNIAGEDQVTLKVTIAE 204 D + E+ T L + A + V+N + +A QV +K+TIAE Sbjct: 132 DRDQIYEMVATLLFDDNADNNAQDDRTELTYMDKLNFEGVVNQIEVARTKQVNVKLTIAE 191 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V ++ G + G G FV + FS ++ V+ A+ Sbjct: 192 VSHSFMQDFGIKVGSNGQ------------AGIFVDQLVHFSASDIVS------VITAVG 233 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + LAEP L+ ISG+ ASF GG+ TV GAT+V ++GV L T V Sbjct: 234 TDSVGQVLAEPNLSVISGEDASFLVGGELPVVTV--IDGATNVQYKEFGVKLDLTAKVER 291 Query: 325 PGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 +I L + VS + +PS + R A TTVEL G + VL GLL + ++ Sbjct: 292 DDKIKLALAPSVSSLDTQYANDNYNLPSLKTRSARTTVELGDGQSFVLGGLLNSEEKESL 351 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 IP + IPILGALFR++ R +TE+ I AT LV+PV + P Sbjct: 352 TRIPFVGDIPILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPT 400 >gi|52425834|ref|YP_088971.1| GspD protein [Mannheimia succiniciproducens MBEL55E] gi|52307886|gb|AAU38386.1| GspD protein [Mannheimia succiniciproducens MBEL55E] Length = 458 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 92/422 (21%), Positives = 173/422 (40%), Gaps = 30/422 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 K + + +++ + + VS AD + + ++GK G +V +G Sbjct: 18 AKPMYLEQGTSKYIELDKKIDTIFVSSSEVADYEIVDDYSFMVYGKQEGTTDVTAFDANG 77 Query: 107 KQMLNLDILIE---RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + + +I ++ +SN++V+ + V+ G T +S+ + Sbjct: 78 NILYTDTLNVNALINNIVDTNKQIKARFPNSNLQVKKLGKAYVIEGKANTQHESEEVNRI 137 Query: 164 SETF-----------------LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 +S V+N NI Q+ +K+T+AEV Sbjct: 138 VGEAIGVAPKVTETTLKRGNGMSDEKIPFLDKYEYNGVINNTNIDKTKQINVKLTVAEVN 197 Query: 207 RDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 ++ +G + ++GS S A + G F G ++ ++ + A+ Sbjct: 198 KNFSDSLGIKWEHLSGSVLENWTSGANGYSGGFDGTTGSIAL---INANRLSAFITAVNN 254 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 A + LAEP ++ +SG++A GG+ + S G TS+ D+GV L V Sbjct: 255 ANNGKILAEPNISMLSGETADILVGGEVPFAQ-RDSDGNTSIIYKDFGVKLMVGAKVQKN 313 Query: 326 GRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 ++ + + EVS + GD+P ++ R+A +T E+ +G + ++ GLL + Sbjct: 314 DQVRIVLAQEVSTLAGNYTYTSVGDIPYFQTRRAKSTFEVGNGESFIIGGLLSSSDLEGV 373 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +PL IPILGA FR+ +RE E+ + AT LV P + P + + Sbjct: 374 SKVPLFGDIPILGAFFRSVTTSRETKELVVVATVNLVTPNDAEKVIYP--SFEQTGTLER 431 Query: 443 FF 444 FF Sbjct: 432 FF 433 >gi|149188846|ref|ZP_01867136.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1] gi|148837266|gb|EDL54213.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1] Length = 453 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 107/405 (26%), Positives = 186/405 (45%), Gaps = 47/405 (11%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 I +N +++ + V VSDP D V + ++ +F K VGQA +++ G K + + Sbjct: 32 ITVNDAKNIELSERITKVFVSDPDIVDYNVINENSIVIFSKAVGQARLMIYGESEKLLYS 91 Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 I+ + D++ + + D+++++E V + V + G+V + ++ L T L + Sbjct: 92 ERIIADIDLSQVRRQVALLFPDTSVKIESVGNQVAVSGIVNSERERDDIYRLVATLLGRE 151 Query: 172 GRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 ++ N + ++ L +A QV +K+++A+V Sbjct: 152 KLEKWDKVQKLKFQNDNISIEEPESMIFERNMTWDGIIERLEVATVQQVNVKISVAQVTE 211 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + +G S SF A+ G + + T++ AL Sbjct: 212 RFAETVGVDWS----------SFGANVGQFLFQQ---------FEAADLTTLITALGNEN 252 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + LAEP LT ISG+SASF GG+ S+ ++T ++G+ L T VL+ + Sbjct: 253 VAQVLAEPNLTVISGESASFLVGGEVPVIV--STNNNVNITFKEFGIKLDLTAKVLTEEK 310 Query: 328 IGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I +++ EVSE + A + P R+A TT+EL G + VL GL+ + + Sbjct: 311 IRMQLFPEVSEIERYIRAAGIEVPQLATRRAMTTIELGDGDSFVLGGLMSSADFEEIQKT 370 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 PL+ IP+LGA FR S +R TE+ I AT LVKP+ +D+ P Sbjct: 371 PLIGDIPVLGAAFRKSSTDRRRTELIIVATVNLVKPMKRKDIQLP 415 >gi|283779855|ref|YP_003370610.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283438308|gb|ADB16750.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 585 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 110/476 (23%), Positives = 201/476 (42%), Gaps = 24/476 (5%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 RY + + L + P+ ++ + + G +K+ + +N +++ Sbjct: 13 RYSLLAGLPALLVALTFAAPAFSQPMSLPGVGPMPAAVKFKVQGPAEKLEMTVNTSRVVE 72 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 P DV +LV++P + SP ++ L G + + D Q+ LD+++ D+ Sbjct: 73 FPFDVPKMLVNNPDLVRITPISPNSIQLSAVKGGVTQLNVWNAD-DQVTTLDLIVIPDVQ 131 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 LEM L+ D+ IR+ ++ ++ + G V + ++E + Sbjct: 132 ELEMILKHEFPDAAIRLRPLASSLYISGFVPKAEMVASITRVAEDYF------------- 178 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239 K++N + + G +V L V + EV R L+ +GF + ++S + G Sbjct: 179 PKIINNMTVGGVQKVLLHVKVMEVSRTKLRTMGFDWAQLNGDDFVTQSVSGLLQTPGTLT 238 Query: 240 SEGGDFSVKGVL-DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G G+L D F L AL + + LAEPTL +SG+ A F GG+ + Sbjct: 239 GNTGATVRFGILTDNNQFYGFLEALRQNDLAKLLAEPTLVTMSGRPAYFNVGGEVPIP-M 297 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKA 356 S G T+V +G + F P VL G I L ++ EV+ +P + +P +R R A Sbjct: 298 QQSLGVTTVQYKQFGTRIDFVPIVLGNGSIRLEVRPEVTEIDPSLRDAVTGVPGFRQRGA 357 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT VE+ +G T+ +AGL+ + ++ G+P L+ +P G FR E E+ I TP Sbjct: 358 DTAVEIKAGQTMAIAGLVYNRVEASNRGVPFLADLPWAGGAFRRVSEKVNEVELVIMVTP 417 Query: 417 FLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN--YKGA 468 + + ++ P + D + + + Q ++G Sbjct: 418 EFTEALDPSEVPACGPGQLTTSPTDKELYGRGYIEVPKANCNNGNCAPQGSMFQGT 473 >gi|225872754|ref|YP_002754211.1| type II/III secretion system protein [Acidobacterium capsulatum ATCC 51196] gi|225792181|gb|ACO32271.1| type II/III secretion system protein [Acidobacterium capsulatum ATCC 51196] Length = 480 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 117/466 (25%), Positives = 201/466 (43%), Gaps = 41/466 (8%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLP--PIKEANAAVINISDVEIGKGK-KISIGLNKVIILQ 61 + M++ L + P P A A + V++ + + + + + L Sbjct: 9 RNLLHRAMTVALIAVLPLAGARPVNAAAAAETAQGPVDFVQLNNSNFMLHLLVGRSMFLD 68 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121 ++ V VSDP + SP + + K G +++++ G+ + + D++ Sbjct: 69 TATPLKRVYVSDPAVLNSFTASPHQVLITAKAPGISSLVVWDESGRS-NVYTVSSDIDVS 127 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L+ + I + D V L G V T ++ A +L++ + Sbjct: 128 GLQAAINAAFPHDMIHASALQDRVTLTGEVATESEAAAAEKLAQGYA------------- 174 Query: 182 KKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKS--- 229 K V N +++A + QV LKV AEV R +Q+GF ++TG+ PS S Sbjct: 175 KTVENSIDLAPQRVQQVQLKVRFAEVDRTRAQQLGFNFISAGRNAAVTGTQQFPSFSNYT 234 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + ++ + + + ALE ++ LAEPT+T+ISG ASF S Sbjct: 235 LGGNSTANPITVSNPLDLLLYSSDLNLGATIQALENDQVLQILAEPTITSISGVEASFLS 294 Query: 290 GGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IG 342 GGQ + V T + +V YGV L FTP V G I L++ EVS + Sbjct: 295 GGQFPFPVVQGGTTGFTSVTVQFRPYGVKLDFTPYVNPDGTIRLKVAPEVSALDYTNEVQ 354 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++ +P+ R+A T V L +G + ++GLL + E +P +S+IPILG LFR+ + Sbjct: 355 ISGYSIPAIDTRRAKTEVVLKNGQSFAISGLLDHRLTNDYERMPGISRIPILGQLFRSYQ 414 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 T++ + TP +V P L P + AK + N++ Sbjct: 415 KQASTTDLIVIVTPTIVDP-----LHEPTVAPKLPALAKPYLDNKL 455 >gi|294102189|ref|YP_003554047.1| type II and III secretion system protein [Aminobacterium colombiense DSM 12261] gi|293617169|gb|ADE57323.1| type II and III secretion system protein [Aminobacterium colombiense DSM 12261] Length = 384 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 108/427 (25%), Positives = 173/427 (40%), Gaps = 53/427 (12%) Query: 1 MRYLQRTFFTMMSIFLFS----SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56 M L+R + ++ + + P +A + ++AV+ +V Sbjct: 1 MACLKRKLWVFFAVVFLTVVVGALPVLAATYHLDVGDSAVLKYQNV-------------- 46 Query: 57 VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 + + V +P D + + L GK G A +I+ G M IL+ Sbjct: 47 ----------KRMSVGNPDVLDAIPLDNNQVLLTGKVEGGAALIVWDAAGMHMEK--ILV 94 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 I L+ + NI V + VVL G V+T +D RAV ++ F Sbjct: 95 HPSIEAPSWELKELLQAENIDVTVRGGAVVLEGKVKTPRDRLRAVAIAGAF--------- 145 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 +KV+NLL + Q+ L+ + EV++ +G + G +F F Sbjct: 146 ----GEKVINLLEVDSAPQIKLRAVVMEVKKKDGDALGMK-----RLEGQEGTFWGIFDL 196 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + KG ++AL + L+ P LT +SG+ AS GG+ Sbjct: 197 TPDTGHMLDYTKGAHYSAKINAWINALVENKEAKILSRPYLTTLSGEEASLNVGGEIPVP 256 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYR 352 V + YGV++ FTP + G I L + EVSE I +P+ R Sbjct: 257 -VGVDNNEIKIEWKPYGVIMKFTPELDGIGEIWLTFEAEVSEIDWENAIETQGIKIPAIR 315 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 RK V L ++V+ GLL + +L + IPLL IPI+G LF++ F +ETE+ I Sbjct: 316 TRKIANKVRLGHNESLVVGGLLDNKQSKLVKKIPLLGDIPIIGELFKSREFTNDETELVI 375 Query: 413 AATPFLV 419 TP +V Sbjct: 376 TVTPEVV 382 >gi|260914312|ref|ZP_05920781.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella dagmatis ATCC 43325] gi|260631413|gb|EEX49595.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella dagmatis ATCC 43325] Length = 465 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 89/408 (21%), Positives = 170/408 (41%), Gaps = 31/408 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 K ++ ++Q + + VS P AD + + ++ K G+A + +G Sbjct: 30 AKTFNLEQGGTQLIQTKEKIDTIFVSSPAIADYEILDDNSFIIYAKEQGRAEISAFDANG 89 Query: 107 KQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 K + N + ++ I+ ++ ++N+ V+ V V+ G R+ ++S + Sbjct: 90 KTLTNDVVNVDSLFTGISDTNQQIKARFPNTNLSVKKVGKAYVIEGKARSQEESDEVHRI 149 Query: 164 SETFLSQSGR---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 L + V+N +N+ Q+ +K+T+ EV + Sbjct: 150 VGEALGNGKKVTETKFKAGESEESLPFLDKYQFDGVVNNVNVDETTQINVKLTVVEVNKK 209 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHALERA 266 + + +G S D G G ++G+L D ++AL+ Sbjct: 210 LSEAVGINWS-------RLSGGVPDLLGGVSRVTGFDGIQGLLKIDASGVSAFINALDNQ 262 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 R LAEP ++ +SG++A GG+ + GA ++ D+G+ L + Sbjct: 263 NNGRILAEPNISMLSGETADILVGGEIPFAQ-RDKEGAPTIIYKDFGIRLAVAAKLQKNN 321 Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 RI L + VS + G++P + R++ + E+ G + ++ GL + Sbjct: 322 RIRLALDQRVSTIAGNYSFESVGEIPFFNTRRSKSVFEVADGESFIIGGLFNSSDLEGIN 381 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 +P+L IPILGA FRN++ +RE+ E+ I AT VKPV ++ P Sbjct: 382 KVPVLGDIPILGAFFRNAKTDREDRELVIVATVNTVKPVQEDEIVYPT 429 >gi|255658704|ref|ZP_05404113.1| putative type II/III secretion system protein [Mitsuokella multacida DSM 20544] gi|260849091|gb|EEX69098.1| putative type II/III secretion system protein [Mitsuokella multacida DSM 20544] Length = 548 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 102/443 (23%), Positives = 187/443 (42%), Gaps = 58/443 (13%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 +SI LN+ L ++ V +++P ADV + ++ + G + G + + +G + Sbjct: 30 PLSIDLNQSYYLNTGRNITRVAIANPKIADVSLLDGTSLNVIGISPGTTTLNVWASNGYR 89 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 I + + L ++ I ++RV+M+ ++L G V+ + A +++ + Sbjct: 90 -YEYRITVSDQDSGLAKIVQDAIGLPDVRVQMIGGKILLRGTVKNQYERNLAYTIAKLYA 148 Query: 169 S---------------------------------------QSGRNQYANSSSKKVMNLLN 189 Q + S+ V+NLL Sbjct: 149 KGSNSSPSQDQGQYVSTTESKSSMTPDGRYENKTVTNDSYQRTPRDTSGSTGDSVVNLLE 208 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--------E 241 + DQ+ ++ E+ K +G ++ S S + G + + Sbjct: 209 MTNPDQINIEAMFVELGTSDAKNLGINYASQDMSDTDSSGIKMNDVGTYYAGESYGRQRS 268 Query: 242 GGD--FSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 GG+ ++ + FS +HAL R ++ P +T +SG++AS GG+ Y+ Sbjct: 269 GGNHWYNSNWLFTHFSKINAEIHALIENGKARVISRPNVTTMSGKNASILIGGEVPYQE- 327 Query: 299 SSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRV 353 S+ G+T+ + YG+ + PTV G I ++T+VS + + MP Sbjct: 328 SNGFGSTTTSYKTYGIGIQLWKPTVDQDGNITTELETQVSRLDWNNAVTKDGYRMPGIAT 387 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R A TTV +PSG T+V+ GLL + + +PLL IPILG LF+ +R++TEI + Sbjct: 388 RSAYTTVNIPSGMTMVIGGLLNSNDANTIQKVPLLGNIPILGELFKYHNKSRQKTEIVVL 447 Query: 414 ATPFLV-KPVAMRDLSRPDDHYS 435 TP +V + R +D Y+ Sbjct: 448 ITPRVVSEETPARMSPDMEDAYN 470 >gi|116626779|ref|YP_828935.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116229941|gb|ABJ88650.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 471 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 102/416 (24%), Positives = 186/416 (44%), Gaps = 40/416 (9%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 + + + ++ + +L D+ V +S+P AD VV SPR + + K G+A + Sbjct: 23 AQATKPQVRDFTLLEGRGELLTFQNDITKVAISEPKIADAVVISPREVMVNAKGPGRATL 82 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS--NIRVEMVSDTVVLHGMVRTIQDS 157 ++ G + +I + +D +M + I + I + DT+VL G+V++ D+ Sbjct: 83 VVW-ETGLDPVRYEIAVTKDTTEWDMFTKSMIDSAGVPIHITGSGDTIVLSGVVKSADDA 141 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIG 214 +R +++T +K V+NLL Q+ L+V A + R L QIG Sbjct: 142 KRLAGMAQT-------------RAKTVINLLQAPPPAEPRQILLQVKFAAIDRVALTQIG 188 Query: 215 FQ-HSITGSSSGPSKS----------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 F S G S + G+ V+ ++ + + AL Sbjct: 189 FNLFSTNDKFIGASSTEQFSSPRFSQLQPTGTGQTVNFSDLLNLFAFRPDLNIGATIKAL 248 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLH 317 E ++ LAEP L + G+ A+F +GG Y T++++ +V +GV L Sbjct: 249 EERNLLQILAEPNLLCLDGKEATFLAGGTFPYPTITTTPTGGATAPVITVQFKPFGVKLD 308 Query: 318 FTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 F PTV G I L++Q EVS + + +P+ R+A+T + L G + +AGL Sbjct: 309 FQPTVTPQGSIDLKVQPEVSSLDYANAVTLQGFVIPALSQRRAETEIILKDGESFAIAGL 368 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + + + + +P L +P+LG +FR+ + E+ + TP VKP+ + ++ Sbjct: 369 IDNRVIETLSKVPGLGDLPVLGKIFRSRSTQKSADELLVVVTPHFVKPLTPEERAK 424 >gi|171921001|gb|ACB59184.1| RcpA [Actinobacillus suis ATCC 33415] Length = 460 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 92/419 (21%), Positives = 174/419 (41%), Gaps = 25/419 (5%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 K ++ + +++ + V VS P AD + T L+ K G+A ++ Sbjct: 24 TAAAKTFTLEQGQSQLIKTDAKIDTVFVSSPDIADYEILDDNTFMLYAKAEGRAEIVAFD 83 Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 DG + +IA ++ +SN+ V+ + V+ G + +S+ Sbjct: 84 VDGTPLTEDFINVNNAINNIAATNEQIQTRFPNSNLSVKKIGKAYVIEGKAKNAAESEEI 143 Query: 161 VELSETFLS-------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 + L + + ++N N Q+ +K+T+AEV + Sbjct: 144 NRIVGESLGAGKKVVEAKVEGSEDAIPFLDKYQYEGIINNANEEDATQINVKLTVAEVNK 203 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 +IG + + + AA G F GG ++ ++ + +L AL+ Sbjct: 204 TFSDEIGINWNNLSGNFFRNLGSAA-INGGFGKSGGQLAL---VNSNNLNVLLSALDNQN 259 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + LAEP ++ +SG++A GG+ + + G +V ++G+ L V R Sbjct: 260 NGKILAEPNISMLSGETADILVGGEVPF-VQRNRDGELNVLYKEFGIKLAVGAKVQKSDR 318 Query: 328 IGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + VS D +P + R++ +T E+ +G + +++GLL + + + Sbjct: 319 IRLLLSQSVSTIAGNYEIDDNHIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKV 378 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 P L +PILGA FR++ +RE E+ + AT LVKPV + P + + FF Sbjct: 379 PFLGDVPILGAFFRSANSSRESKELVVVATVNLVKPVDGSQILYPT--FENTGTMERFF 435 >gi|152981036|ref|YP_001355006.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille] gi|151281113|gb|ABR89523.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille] Length = 429 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 109/437 (24%), Positives = 194/437 (44%), Gaps = 37/437 (8%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS-----PRTMYLFGKN 93 S + + +++ + + + L+ P D++ + V+DP AD+++ P ++ L GK Sbjct: 14 TSFPALAEEMNLTVRVREQLQLKTPADLERIAVADPEVADILIIKGSNKRPGSIMLVGKK 73 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G +V +G + + + L+ + + +++ SD+ L G + Sbjct: 74 PGSTSVTAWQRNGPT-KVWQVSV-------QSALQGLLPEEGAELQINSDSASLRGQSPS 125 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + V + + +K ++ +A V + V I E R++LK+ Sbjct: 126 LLSHANTVAAGTQAVGK-----------EKFLDTSTVATSGMVQIDVQIVEFSRNVLKEA 174 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIR 270 GF I + G + SF + +S V +L S + +E+ R Sbjct: 175 GFDF-IFNQNRGATFSFGLNNFSTILSSTVQTPVSQAFNLLGSTSVNARVKLIEQNGLAR 233 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LA P+L A+SGQSASF +GG+ S G T++ +G+ L TPTVLS RI L Sbjct: 234 VLARPSLIALSGQSASFLAGGELPVPQ-SGGLGTTTIIYKAFGIGLTVTPTVLSANRIAL 292 Query: 331 RIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 ++ E S+ N +P+ R+ +TT+EL G + V+ GL+ + +P Sbjct: 293 KVAPEASDLDYANAIVTNNMMIPAISTRRTETTLELGDGESFVIGGLVSRTTKSNVNKVP 352 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFF 445 L +PILG FR+ +++++E E+ I ATP LVKP+A L P D D + Sbjct: 353 FLGDLPILGPFFRSMQYSQDEKELVIIATPHLVKPIAKGAQLPLPGDDKERRDTPANAWS 412 Query: 446 NRVNKIYGPKEASEVEG 462 + + G ++ G Sbjct: 413 ---SYVMGAAGRDDLPG 426 >gi|134295595|ref|YP_001119330.1| type II and III secretion system protein [Burkholderia vietnamiensis G4] gi|134138752|gb|ABO54495.1| type II and III secretion system protein [Burkholderia vietnamiensis G4] Length = 443 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 110/445 (24%), Positives = 181/445 (40%), Gaps = 45/445 (10%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP---RTMYLFGKNVGQANVI 100 I + + + +Q V V DP ADV++ ++ L K G NV+ Sbjct: 21 ASASGTIELAVGAQRQIAAGRALQRVAVGDPAIADVLIMKGSRAGSVLLTAKAPGTTNVM 80 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + + ++ + ++ + + S +V+ T VL G ++ +RA Sbjct: 81 VWERGHDEPTVWNVEV------VDAAAQAVLDASTPQVKAYGGTSVLRGTAGSLDAHERA 134 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217 V +++ + V++ +AG++ V + V + E R +LKQ+GF Sbjct: 135 VAVAKNMSPKGA-----------VIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQ 183 Query: 218 ------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + + G AA F++ L LE Sbjct: 184 SNGFSFGSFSPGGVQSYNGGSGPGTAAYIPTLGAPVASAFNLVVNAAGHGIFADLSLLEA 243 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R LAEPTL A+SGQSASF +GG+ + G+T++ YGV L TPTVLSP Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLSP 302 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 303 NRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL +PI+G F+N + + + E+ I TP LV P+A + + Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAVLPAT-----PGELA 417 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 418 EQHDGPVWRSYLGGAASPDAAPGFS 442 >gi|312882144|ref|ZP_07741893.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122] gi|309370190|gb|EFP97693.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122] Length = 456 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 102/432 (23%), Positives = 192/432 (44%), Gaps = 49/432 (11%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 SI LN +QV + + V +S+P AD V + T+ ++ VGQ+ +I+ G D +L Sbjct: 34 SITLNDGQHIQVNMPIGKVFISNPEVADYKVINENTLVVYANEVGQSRLIVYGTDSSVLL 93 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + I+++ +++ + L+ D ++V+ + V + G+V + + L T L + Sbjct: 94 SDRIVVDLNLSEVRRQLKFHYPDVQVKVQSIGTQVAVSGVVDSEETRDDIYRLVATLLGR 153 Query: 171 SGRNQYA------------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ N + + ++ + + QV +K++IA V Sbjct: 154 EKTEKWNQVEKLTFESENTRYEEPESMVFARNMTWEGIIERIKVTTTQQVNVKISIAHVT 213 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + +G G+ G V + + T++ AL Sbjct: 214 ESFGQTVGIDWGSIGARVGSF-------------------VFDQFNAANLGTIISALGND 254 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP LT +SG+SASF +GG+ ++ +V+ +G+ L+ T VLS Sbjct: 255 EIAQVLAEPNLTVLSGESASFLAGGEVPVIVLNDRN--LTVSFKQFGIGLNLTAKVLSRD 312 Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I +++ VSE + +P + +RKA TTVEL G + +L GL+ + + Sbjct: 313 KIQMQLAPSVSEVEGFVEFEGLKVPQFTLRKALTTVELSDGDSFILGGLMSSADFEEMQK 372 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +P++ IP+ GA FR ++ R+ TE+ I AT LV+PV D+ P + + + + Sbjct: 373 VPVIGDIPLFGAAFRKAKTERKRTELIIVATVNLVEPVRPNDIQVP--YINKTSTLERWL 430 Query: 445 FNRVNKIYGPKE 456 + + P Sbjct: 431 NINSDDSFQPSS 442 >gi|238790280|ref|ZP_04634054.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii ATCC 33641] gi|238721630|gb|EEQ13296.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii ATCC 33641] Length = 463 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 112/441 (25%), Positives = 193/441 (43%), Gaps = 50/441 (11%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + I + + L+V V V +S+P AD V + + +F + G+A++ + G D Sbjct: 35 SQDIYMEKGEARTLKVNAAVDTVFISNPDVADYEVIDEKQVVIFARENGRASLEIYGGDN 94 Query: 107 K-QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 ++ + I+++ + +++ + S+I ++ + VL G V + Sbjct: 95 NATLMTMSIIVDPLLGNIKKEMAEEYPGSDIDIKKYGEGYVLTGTVPDEDAREGIYMTVG 154 Query: 166 TFLSQSGRNQYANSSSKKV------------------------MNLLNIAGEDQVTLKVT 201 L + V +N L + +QV +K+T Sbjct: 155 QALGLKRKETELKIKPGSVNSIGGDDSNDTPIDFMQKVVFEGLVNRLKLPTTNQVNVKLT 214 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + EV + + +G S G +G K D S ++++ Sbjct: 215 VVEVTKTFMDNVGVDWSNAGLGAGQFN-----------------LTKFRFDANSLNSLIY 257 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 A++ + R LAEP L+ +SG++A F GG+ T S +++T ++GV L Sbjct: 258 AIKNDSIARILAEPNLSVLSGETADFLVGGEIPIVTTS--MAGSTITYKEFGVKLVIAAK 315 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 V S +I L + E+S GD +P R RKA TTVEL G + VL GLL ++ + Sbjct: 316 VESNNKIKLNLSEEISSLDGQYALGDLNIPKLRSRKARTTVELGDGDSFVLGGLLNENEK 375 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 + GIP +S IPILGALFR + RE TE+ + AT LVKP++ + P ++ + Sbjct: 376 ESLSGIPFISDIPILGALFRRTGAERERTELVVVATVNLVKPISFNKVVLP--NFVRSNL 433 Query: 440 AKAFFFNRVNKIYGPKEASEV 460 A+ FF ++ I K +V Sbjct: 434 AERFF--NISAIRESKSRKQV 452 >gi|194335913|ref|YP_002017707.1| type II and III secretion system protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308390|gb|ACF43090.1| type II and III secretion system protein [Pelodictyon phaeoclathratiforme BU-1] Length = 510 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 108/500 (21%), Positives = 194/500 (38%), Gaps = 64/500 (12%) Query: 7 TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKIS-IGLNKVIILQVPVD 65 + + L + P P ++ V I + L + + + Sbjct: 13 CRMSALVALLVGTVPMATMASPEPVRRRDDSYVTVVSEMTAPSIYLVPLGESRVYRFAQP 72 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 ++ V + DP AD ++ + +YL GK +G N+ + +G + + + + R L+ Sbjct: 73 IKRVAMGDPKVADYIMLNRFEVYLLGKKMGSTNLAVWDQNGN-LTSSPVQVSRGTTALQA 131 Query: 126 TLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS--------------- 169 L+ N I + + +VL G V ++ L ++ Sbjct: 132 LLKVLFPKENDIHLLALGPALVLSGSVSDALVAESVARLVRSYFGGSVSSGTPESALVGT 191 Query: 170 --------------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 ++ + + S++ V+NLL + QV L+V IA Sbjct: 192 DSKPFTGIIEEMSKDVVFSKTESHSKETTTHGGESDSTRGVVNLLKVRDSQQVRLEVCIA 251 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 +V R ++ +G T + FVS ++ + + A Sbjct: 252 QVSRTFIESLGISFFKT-----SGDIQGSTLLSGFVSNATLNNLLLGRLGQANGIKMVAD 306 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YG 313 + + + LAEPT+ +SG+ F GG+ ++ +D YG Sbjct: 307 RKPSLFKVLAEPTIVTMSGKEGFFLVGGKIYVPVRVIDYSPINLQEYDKYYISYKEYLYG 366 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 V L F P VL GRI L++ +EVSEP ++P +++ T V++ G +V Sbjct: 367 VGLRFMPVVLDAGRISLKVVSEVSEPDTESATSGTKANLPLFKISTVSTNVQMNEGENLV 426 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + GL D+ + +PLLS+IPILGALFR+++ N E+TE+ + P LVK A Sbjct: 427 IGGLKLDNFANAIDSVPLLSEIPILGALFRDTKKNAEKTELMVIIRPTLVKGSATM-PEL 485 Query: 430 PDDHYSVEDDAKAFFFNRVN 449 P D + F ++ Sbjct: 486 PTDRVIPPTRKELFLDGKLE 505 >gi|332284569|ref|YP_004416480.1| putative outer membrane protein [Pusillimonas sp. T7-7] gi|330428522|gb|AEC19856.1| putative outer membrane protein [Pusillimonas sp. T7-7] Length = 474 Score = 263 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 110/447 (24%), Positives = 191/447 (42%), Gaps = 36/447 (8%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 S + +++ + +V +L +P DV V V D + V + + +F ++ G + Sbjct: 18 SGAAPSQEAMLNLQVGEVKVLGIP-DVARVAVGDGHIINAVATDEKEVIVFARHEGSTAL 76 Query: 100 ILIGHDGKQMLNLDILIER-DIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDS 157 + DG++ I + + ++ LR + + ++ V D +V+ G + D Sbjct: 77 QIWSADGQR-WQYQIEVAPEGLRQIQQELRSVLERIPHAQLSAVGDKLVIEGDDLSDGDR 135 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 +R EL++ + ++++ + + V L V + EV R L+++G + Sbjct: 136 ERIAELAKHY--------------PQLLDFTGQVGWDRMVLLDVQVVEVPRIQLQELGLR 181 Query: 217 HSITGSSSGPSKSFAADFGGK-----------FVSEGGDFSVKGVLDRFSFETVLHALER 265 + T + G S A D G K + + ++A+ + Sbjct: 182 WN-TATDGGLSAGLAWDGGSKRLDDRPSESVMPIGFPATMAAGYFGVNALLSARINAMAQ 240 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 LA+P L A SG +A F +GG+ Y TV + G T+ YGV L TP + Sbjct: 241 KGTAVVLAQPQLLARSGSTAEFLAGGEVPYSTV-DANGNTNTAFKPYGVSLRITPQIERN 299 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G + RI+ EVS ++ + PS + R+A T + SG T+VLAG L + + + Sbjct: 300 GAVRSRIEVEVSSVDNALSVPNGPSLKTRRAATEFNVRSGQTLVLAGFLSREATHNVDKV 359 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV---KPVAMRDLSRPDDHYSVEDDAKA 442 P L IPILG LF++SRF R ETE+ I TP LV P R + +D Sbjct: 360 PGLGDIPILGELFKSSRFQRHETELAIFVTPVLVGADHPGLARRVQLGEDILKTAFPQAP 419 Query: 443 FFFNRVNKIYGP-KEASEVEGQNYKGA 468 + + P A +V ++G Sbjct: 420 IINASLAPLPKPLVAADQVSWDPWQGP 446 >gi|218459699|ref|ZP_03499790.1| cpaC pilus assembly Q protein [Rhizobium etli Kim 5] Length = 409 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 112/421 (26%), Positives = 190/421 (45%), Gaps = 33/421 (7%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59 M +R S+ ++ S A A V +GK + +++ N+ + Sbjct: 1 MANGKRRIARTKSLAALAAVFSACVCLGPGFAGFASAQEKSVTLGKSVQHVTLPPNETLT 60 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 L D+++ DVV S R++++ GK +G N+ + G D + +DI + D Sbjct: 61 LNTGQPFGDLVIGSADMIDVVPLSDRSLFVRGKKIGATNISVYGDDKSLLGVIDIRVASD 120 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + + +R + +RV +D + L G+VR + QR +E+++++ Sbjct: 121 FSEVASAIRSAAPSARVRVVNSNDRIRLVGVVRDGIELQRVLEIAQSY------------ 168 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF----- 234 S + V+N L ++ QV L+V I E R + +G S GS+ + + Sbjct: 169 SEQPVLNQLRVSDSQQVMLEVRIIEASRQTGRDLGIGWSGQGSNGIGKATTSQGITVNDD 228 Query: 235 -------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + G + + + + V++ALE+ +R LA+P L A+S Sbjct: 229 GNLARTLLDPKGAATGMLPFGQLIAKVLQISGGNIDVVINALEQKGLVRRLAQPNLIAMS 288 Query: 282 GQSASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 G +ASF +GG+ T + +T AT +GV L F P VL G I L I+ EVSE Sbjct: 289 GSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGVINLEIEPEVSEL 348 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +N P + R A TTV L G + +AGLL+ + + +P L +IP+LGALFR Sbjct: 349 DPAINVNGNPGFISRAASTTVALRDGQSFAMAGLLQSINAKDIQQLPGLGQIPVLGALFR 408 Query: 400 N 400 + Sbjct: 409 S 409 >gi|320101627|ref|YP_004177218.1| type II and III secretion system protein [Isosphaera pallida ATCC 43644] gi|319748909|gb|ADV60669.1| type II and III secretion system protein [Isosphaera pallida ATCC 43644] Length = 712 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 105/517 (20%), Positives = 193/517 (37%), Gaps = 102/517 (19%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKA-------DVVVH-------SPRTMYLFG 91 ++S+ + + ++Q+ ++ +P A DV R ++G Sbjct: 170 PSVELSVVVGRGKVIQLREQPLRFILGNPRIATLSFPPSDVQSLAQLDRPSDARLFVVYG 229 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 G + + + + + D ++ +R +++ V ++ ++L G V Sbjct: 230 IQAGTTTLTIWDKNN-VPTTFLVRVSVDTLDIQNQIRAVFPGTDVTVRQSANQIILEGQV 288 Query: 152 RTIQDSQRAVELSETFL-----------------------------SQSGRNQYANSSSK 182 + + L L ++ ++ + S Sbjct: 289 PDTKTMNEVIRLVNGLLVSNQAGEVRAPTGAGGGGGGQSVGAFAAAERALGDEAPSGISP 348 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGP---------- 226 +++N L + G Q+ LKV +AE+ R +++IG S+ GS G Sbjct: 349 QIINRLRVPGPRQILLKVKLAELNRTAIREIGANWLRGRNNSLIGSQIGGIAGFTTETNT 408 Query: 227 --SKSFAADFGGKFVSEGG-----------------------------DFSVKGVLDRFS 255 + +FAA G+ GG + G+ Sbjct: 409 QMTAAFAAPSFGRPGIAGGQPIPGSVTGSLIQGIDTLLNATAGSALQPSAQLFGIFRAGE 468 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTT 309 F+ L+AL LAEP LTA+ GQ A +GG+ + ++ Sbjct: 469 FDLFLNALRTNNLATILAEPNLTALDGQPARVIAGGEIPFPVPQLGAGGGGGGAVITIQF 528 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSG 365 +G +L F P +L I L ++ S P G +N +P + R A T V+L G Sbjct: 529 RPFGAILTFLPQILEDDLIRLDVEPVFSTPNQGLGTSINGTAVPGFNTRSARTVVQLREG 588 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T+ +AGL++ + Q IPLL PI+G LF +RF ETE+ + TP+L+ P+ Sbjct: 589 ETLAIAGLIQKNNQAATNRIPLLGDAPIVGPLFSRNRFETLETELIVIVTPYLIAPMGEG 648 Query: 426 DLSR-PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 ++ + P D+ +D + F R G S ++ Sbjct: 649 EVPKVPTDYVDEPNDIEFFILGRTEGKTGIPHRSTIQ 685 >gi|165975974|ref|YP_001651567.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876075|gb|ABY69123.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 462 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 93/420 (22%), Positives = 171/420 (40%), Gaps = 27/420 (6%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 K ++ + +++ + + VS AD + + L+ K G++ VI Sbjct: 25 AMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDA 84 Query: 105 DGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 +G + +IA ++ +SN+ V+ V VL G + +S Sbjct: 85 NGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEIN 144 Query: 162 ELSETFLSQSGR---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + L + + V+N N Q+ +K+T+AEV Sbjct: 145 RIVGESLGAGKKVIETKLKHNNSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEVN 204 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + +IG S + + A G F GG ++ ++ + ++ AL+ Sbjct: 205 KTFSDEIGINWSNLSGNFFRNLG-NAGIQGNFNKNGGQLAL---VNSNNLNVLISALDNQ 260 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP ++ +SG++A GG+ + G SV ++G+ L V Sbjct: 261 NNGKILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSD 319 Query: 327 RIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 RI L + VS + +P + R++ +T E+ +G + +++GLL + + Sbjct: 320 RIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK 379 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + FF Sbjct: 380 VPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFF 437 >gi|46143341|ref|ZP_00204447.1| COG4964: Flp pilus assembly protein, secretin CpaC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208037|ref|YP_001053262.1| rough colony protein A [Actinobacillus pleuropneumoniae L20] gi|126096829|gb|ABN73657.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 462 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 94/420 (22%), Positives = 172/420 (40%), Gaps = 27/420 (6%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 K ++ + +++ + + VS AD + + L+ K G++ VI Sbjct: 25 AMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDA 84 Query: 105 DGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 +G + +IA ++ +SN+ V+ V VL G + +S Sbjct: 85 NGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEIN 144 Query: 162 ELSETFLSQSGR---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + L + + V+N N Q+ +K+T+AEV Sbjct: 145 RIVGESLGAGKKVIETKLKHNDSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEVN 204 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + +IG S + + AA G F GG ++ ++ + ++ AL+ Sbjct: 205 KTFSDEIGINWSNLSGNFFRNLGNAA-IQGNFNKNGGQLAL---VNSNNLNVLISALDNQ 260 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP ++ +SG++A GG+ + G SV ++G+ L V Sbjct: 261 NNGKILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSD 319 Query: 327 RIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 RI L + VS + +P + R++ +T E+ +G + +++GLL + + Sbjct: 320 RIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK 379 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + FF Sbjct: 380 VPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFF 437 >gi|307245412|ref|ZP_07527500.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254367|ref|ZP_07536205.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258825|ref|ZP_07540557.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261005|ref|ZP_07542687.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306853753|gb|EFM85970.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862666|gb|EFM94622.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867176|gb|EFM99032.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869307|gb|EFN01102.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 462 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 94/420 (22%), Positives = 172/420 (40%), Gaps = 27/420 (6%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 K ++ + +++ + + VS AD + + L+ K G++ VI Sbjct: 25 AMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDA 84 Query: 105 DGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 +G + +IA ++ +SN+ V+ V VL G + +S Sbjct: 85 NGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEIN 144 Query: 162 ELSETFLSQSGR---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + L + + V+N N Q+ +K+T+AEV Sbjct: 145 RIVGESLGAGKKVIETKLKHNDGEENVPFLDKYQYEGVINNANEENATQINVKLTVAEVN 204 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + +IG S + + AA G F GG ++ ++ + ++ AL+ Sbjct: 205 KTFSDEIGINWSNLSGNFFRNLGNAA-IQGNFNKNGGQLAL---VNSNNLNVLISALDNQ 260 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP ++ +SG++A GG+ + G SV ++G+ L V Sbjct: 261 NNGKILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSD 319 Query: 327 RIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 RI L + VS + +P + R++ +T E+ +G + +++GLL + + Sbjct: 320 RIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK 379 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + FF Sbjct: 380 VPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFF 437 >gi|190149865|ref|YP_001968390.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307249759|ref|ZP_07531737.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307256574|ref|ZP_07538355.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307263189|ref|ZP_07544810.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914996|gb|ACE61248.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306858174|gb|EFM90252.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306864984|gb|EFM96886.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871551|gb|EFN03274.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 462 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 94/420 (22%), Positives = 172/420 (40%), Gaps = 27/420 (6%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 K ++ + +++ + + VS AD + + L+ K G++ VI Sbjct: 25 AMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFDA 84 Query: 105 DGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 +G + +IA ++ +SN+ V+ V VL G + +S Sbjct: 85 NGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEIN 144 Query: 162 ELSETFLSQSGR---------------NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + L + + V+N N Q+ +K+T+AEV Sbjct: 145 RIVGESLGAGKKVIETKLKHNNSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEVN 204 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + +IG S + + AA G F GG ++ ++ + ++ AL+ Sbjct: 205 KTFSDEIGINWSNLSGNFFRNLGNAA-IQGNFNKNGGQLAL---VNSNNLNVLISALDNQ 260 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + LAEP ++ +SG++A GG+ + G SV ++G+ L V Sbjct: 261 NNGKILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSD 319 Query: 327 RIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 RI L + VS + +P + R++ +T E+ +G + +++GLL + + Sbjct: 320 RIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKK 379 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + FF Sbjct: 380 VPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFF 437 >gi|238762407|ref|ZP_04623378.1| Type II/III secretion system protein [Yersinia kristensenii ATCC 33638] gi|238699392|gb|EEP92138.1| Type II/III secretion system protein [Yersinia kristensenii ATCC 33638] Length = 379 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 97/371 (26%), Positives = 172/371 (46%), Gaps = 25/371 (6%) Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141 ++ ++ K G A IL + + + +L+ I ++ +S+I + + Sbjct: 1 MGKNSIIVYAKQEGTAEFILFNQNNQPIKKSAVLVNNTITAANKRIQIEYPESDIEINKI 60 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQV 196 + +L GM + + V + + + ++N + + G +QV Sbjct: 61 GTSYILTGMAESEEAKDTIVSIIGEAIGSKKTIDTDSQYLNTPEYYGIINKIKLMGTNQV 120 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 +K+TIAEV +D + IG S G SG + + F + G Sbjct: 121 NVKLTIAEVTKDFSENIGVDWSTIGDFSGSFQLVKLNSLNNFSARG-------------I 167 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 ++HA+ + R LAEP L+ +SG+SASF GG+ V+++ +T +T ++G+ L Sbjct: 168 SALVHAINDDSIARVLAEPNLSVLSGESASFLVGGEIP--MVNTTQNSTVITYKEFGIKL 225 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + V RI + + EVS N PS+R RKA TT+EL G + +L GL Sbjct: 226 NIGAKVNEKKRIRIMLDEEVSSIDKVFNIDGGNAYPSFRTRKAATTLELGDGESFILGGL 285 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 + + ++ + IP + IPILGA FRN+ + +TE+ + AT LV+PV+ R++ P + Sbjct: 286 ISNSERESLKKIPFIGDIPILGAFFRNAETRKNQTELVVVATVNLVRPVSEREVELP--N 343 Query: 434 YSVEDDAKAFF 444 + + FF Sbjct: 344 FMHTSTLERFF 354 >gi|121607248|ref|YP_995055.1| type II and III secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121551888|gb|ABM56037.1| type II and III secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 714 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 92/435 (21%), Positives = 178/435 (40%), Gaps = 41/435 (9%) Query: 24 AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83 A+ P + + + + +I + + + + P V + V + Sbjct: 62 ARKPAPTPSQPYLPIRKQDDQAQVPEIEMFVGESRVFPSPG-VARIAVGNGKVLTAAALD 120 Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVS 142 R + +F VG +++ + DG+ ++ D + + F++ +N + ++ Sbjct: 121 EREVIVFANEVGTSSLFVWNEDGRYQRVKINVVPGDTSRYAREIAAFLSTIANTKASIIG 180 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVT 201 D V++ G + D ++ +L + + +++N N G +Q V + V Sbjct: 181 DKVIVEGDNLSDIDLRKIEDLRKHY--------------PQIVNFTNQIGWEQMVLMDVK 226 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPS------------------KSFAADFGGKFVSEGG 243 + E + L+++G + + G +S G + Sbjct: 227 VVEFPVNELRELGLRWAAKGGASIGGIWSPIRRVHQDGLRIDVESPPITAADGDLIPLPK 286 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 ++ L+ L L LA+P L+A +G A F +GG++ Y V+SS Sbjct: 287 GLNILSALN-MGLGAKLDLLASQGKASILAQPQLSARNGAKAEFLAGGEYPY--VASSIN 343 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 +V YG+ L TP V G I I +EVS ++ P+ VR+ T + Sbjct: 344 GPTVMFKPYGIRLKITPRVDRNGVIRAEIDSEVSNIDPSISTAAGPALSVRRTFTEFNVQ 403 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK--- 420 +G T+VL+GL+ Q + +P L +P+LGALFR+ RF +ETE+ + TP ++ Sbjct: 404 NGETMVLSGLMSRKTSQNIDKVPFLGDLPVLGALFRSKRFQNDETELVVFVTPTVINSQS 463 Query: 421 PVAMRDLSRPDDHYS 435 P ++ + R D Sbjct: 464 PGLVQRIERITDDLR 478 >gi|172060495|ref|YP_001808147.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] gi|171993012|gb|ACB63931.1| type II and III secretion system protein [Burkholderia ambifaria MC40-6] Length = 461 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 112/445 (25%), Positives = 176/445 (39%), Gaps = 45/445 (10%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVI 100 I + + + +Q V V DPT ADV++ ++ L K G NV+ Sbjct: 39 ASASGTIELAVGAQRQISAGRALQRVAVGDPTIADVLIMKGSRSGSVLLTAKAPGATNVM 98 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + I + ++ + S +V+ T VL G T+ +RA Sbjct: 99 LWERGHDEPTVWSIEV------VDAAAHAVLDGSMPQVKAYGGTSVLRGTSATLDAHERA 152 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217 +++ S V++ +AG+ V + V + E R +LKQ+GF Sbjct: 153 ATVAKNM-----------SPKGTVIDRSTLAGKSVVQVDVRVVEFSRSVLKQVGFNFFKQ 201 Query: 218 ------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + + G A F++ L LE Sbjct: 202 SNGFSFGSFSPGGVQSYNGGSGPGTAGYIPALGAPVASAFNLVVNAAGRGIFADLSLLEA 261 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R LAEPTL A+SGQSASF +GG+ + G+T++ YGV L TPTVL P Sbjct: 262 NNMARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLGP 320 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 321 NRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 380 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL +PI+G F+N + + + E+ I TP LV P+A + + Sbjct: 381 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAVLPAT-----PGELS 435 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 436 EQRDGPVWRSYLGGAASPDAAPGFS 460 >gi|167570105|ref|ZP_02362979.1| type II/III secretion system protein [Burkholderia oklahomensis C6786] Length = 434 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 122/454 (26%), Positives = 192/454 (42%), Gaps = 50/454 (11%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH--SPRTMY 88 A AA + ++ G +++S+G N VQ V V DP ADV+V ++ Sbjct: 12 AARAAEMGTIELATGAQRQVSVGRN----------VQRVAVGDPNVADVLVVKGGRGSVL 61 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 L K G ++++ + + + A R + + V+ T V+ Sbjct: 62 LVAKAAGSTSLMVWERGRDEPAVYTVNVVSGAA------RALLDGGSPSVKAYGGTAVVS 115 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G T+ RA+ L + + G V++ + G++ V + V + E R Sbjct: 116 GSAATLDAHARALALGKGMAGKDG----------GVVDASTVGGKNVVQVDVRVVEFSRS 165 Query: 209 ILKQIGFQH--SITGSSSGPS--KSFAADFGGKFVS--------EGGDFSVKGVLDRFSF 256 +LKQ G G + G A+ GG S F++ Sbjct: 166 VLKQAGLNFFKQNNGFTFGAFAPSGLASVTGGATPSMSVSANIPISSAFNLVVGSATRGL 225 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 L LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L Sbjct: 226 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 284 Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 TPTVLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ G Sbjct: 285 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGG 344 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L+ + + +P L +PI+G F++ + + + E+ I TP LV P+A ++ S P Sbjct: 345 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 401 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + V + Y S G + Sbjct: 402 --ATPGELSEQRDGPVWRSYLGGALSPDAGPGFS 433 >gi|221213139|ref|ZP_03586115.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD1] gi|221167352|gb|EED99822.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD1] Length = 443 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 119/445 (26%), Positives = 182/445 (40%), Gaps = 45/445 (10%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100 G I + + + +Q V V DP ADV++ + + K G NV+ Sbjct: 21 ASAGGTIELAVGAQRQISAGRALQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGATNVM 80 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + ++ + ++ + DS RV T VL G ++ +RA Sbjct: 81 LWERGRDEPTVWNVEV------VDAAAHAVLDDSTPRVNTYGGTSVLRGTAASLDAHERA 134 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--S 218 V + + + V++ +AG++ V + V + E R +LKQ+GF Sbjct: 135 VAVGKNVSGKGA-----------VIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQ 183 Query: 219 ITGSSSGPSKSFAADF--GGKFVSEGGDFSVKGVLDRFSFETVLHA-----------LER 265 G S G GG G G +F V++A LE Sbjct: 184 SNGFSFGSFSPGGVQSYNGGAGPGSAGYLPTLGAPVASAFNLVVNAAGRGIFADLSLLEA 243 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R LAEPTL A+SGQSASF +GG+ + G+T++ YGV L TPTVLSP Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLSP 302 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL +PI+G F+N + + + E+ I TP LV P+A E Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPATPGQLSEQRD- 421 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 422 ----GPVWRSYLGGAASPDAAPGFS 442 >gi|221197781|ref|ZP_03570827.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD2M] gi|221204661|ref|ZP_03577678.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD2] gi|221175518|gb|EEE07948.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD2] gi|221181713|gb|EEE14114.1| bacterial type II/III secretion system protein [Burkholderia multivorans CGD2M] Length = 443 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 119/445 (26%), Positives = 182/445 (40%), Gaps = 45/445 (10%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100 G I + + + +Q V V DP ADV++ + + K G NV+ Sbjct: 21 ASAGGTIELAVGAQRQISAGRALQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGATNVM 80 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + ++ + ++ + DS RV T VL G ++ +RA Sbjct: 81 LWERGRDEPTVWNVEV------VDAAAHAVLDDSTPRVNTYGGTSVLRGTAASLDAHERA 134 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--S 218 V + + + V++ +AG++ V + V + E R +LKQ+GF Sbjct: 135 VAVGKNVSGKG-----------TVIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQ 183 Query: 219 ITGSSSGPSKSFAADF--GGKFVSEGGDFSVKGVLDRFSFETVLHA-----------LER 265 G S G GG G G +F V++A LE Sbjct: 184 SNGFSFGSFSPGGVQSYNGGAGPGSAGYLPTLGAPVASAFNLVVNAAGRGIFADLSLLEA 243 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R LAEPTL A+SGQSASF +GG+ + G+T++ YGV L TPTVLSP Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLSP 302 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL +PI+G F+N + + + E+ I TP LV P+A E Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPATPGQLSEQRD- 421 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 422 ----GPVWRSYLGGAASPDAAPGFS 442 >gi|83718419|ref|YP_443059.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|167582062|ref|ZP_02374936.1| type II/III secretion system protein [Burkholderia thailandensis TXDOH] gi|167620224|ref|ZP_02388855.1| type II/III secretion system protein [Burkholderia thailandensis Bt4] gi|257139289|ref|ZP_05587551.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|83652244|gb|ABC36307.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 441 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 120/454 (26%), Positives = 192/454 (42%), Gaps = 50/454 (11%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MY 88 A AA + ++ G ++I++G VQ V + DP+ ADVVV + Sbjct: 19 AARAAEMGTIELATGAQRQIAVGRG----------VQRVAIGDPSVADVVVIKGGRGGVL 68 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 L K G N+++ + + + A R + + V+ + T V+ Sbjct: 69 LVAKAAGSTNLMVWERGRDEPSVYTVNVASGAA------RALLDGGSPSVKAYNGTAVVS 122 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G T+ RA+ + + + G V++ + G++ V + V + E R Sbjct: 123 GSAATLDAHARALAVGKGMAGKDG----------GVVDASTVGGKNVVQVDVRVVEFSRS 172 Query: 209 ILKQIGFQH-----SITGSSSGPSKSFAADFGGKF-------VSEGGDFSVKGVLDRFSF 256 +LKQ G T S P+ + GG + F++ Sbjct: 173 VLKQAGLNFFKQSNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGL 232 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 L LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L Sbjct: 233 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 291 Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 TPTVLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ G Sbjct: 292 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGG 351 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L+ + + +P L +PI+G F++ + + + E+ I TP LV P+A ++ S P Sbjct: 352 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 408 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + V + Y S G + Sbjct: 409 --ATPGELSEQRDGPVWRSYLGGVLSPDAGPGFS 440 >gi|167562915|ref|ZP_02355831.1| type II/III secretion system protein [Burkholderia oklahomensis EO147] Length = 432 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 122/454 (26%), Positives = 192/454 (42%), Gaps = 50/454 (11%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH--SPRTMY 88 A AA + ++ G +++S+G N VQ V V DP ADV+V ++ Sbjct: 10 AARAAEMGTIELATGAQRQVSVGRN----------VQRVAVGDPNVADVLVVKGGRGSVL 59 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 L K G ++++ + + + A R + + V+ T V+ Sbjct: 60 LVAKAAGSTSLMVWERGRDEPAVYTVNVVSGAA------RALLDGGSPSVKAYGGTAVVS 113 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G T+ RA+ L + + G V++ + G++ V + V + E R Sbjct: 114 GSAATLDAHARALALGKGMAGKDG----------GVVDASTVGGKNVVQVDVRVVEFSRS 163 Query: 209 ILKQIGFQH--SITGSSSGPS--KSFAADFGGKFVS--------EGGDFSVKGVLDRFSF 256 +LKQ G G + G A+ GG S F++ Sbjct: 164 VLKQAGLNFFKQNNGFTFGAFAPSGLASVTGGATPSMSVSANIPISSAFNLVVGSATRGL 223 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 L LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L Sbjct: 224 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 282 Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 TPTVLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ G Sbjct: 283 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGG 342 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L+ + + +P L +PI+G F++ + + + E+ I TP LV P+A ++ S P Sbjct: 343 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 399 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + V + Y S G + Sbjct: 400 --ATPGELSEQRDGPVWRSYLGGALSPDAGPGFS 431 >gi|296124072|ref|YP_003631850.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] gi|296016412|gb|ADG69651.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] Length = 772 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 110/483 (22%), Positives = 192/483 (39%), Gaps = 62/483 (12%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 + + + + + + ++ +V ++DP DVV + PR + + G + G Sbjct: 163 RLIESMPSSEEDLEVIHRRSQLIVTRANVIRAAIADPNVIDVVQYGPREISIIGVSRGTT 222 Query: 98 NVILIGHDGKQMLNLDILIERDIA----------HLEMTLRRFIADSNIRVEMVSDTVVL 147 + L + L + + RD A LE L+ +S + + +S +V+ Sbjct: 223 TLTLWFEGAAEPLIYLVKVIRDPALDFQRRLDYGKLEKKLQTLFPNSKVYLIPMSYKIVV 282 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANS---------------------------- 179 G R +++ + + + + Sbjct: 283 RGQARDAEEAAHILSIVRGEVINQEGSLGGPQPFLGGLGGDLGGGSSTIDNGAIGGIGNS 342 Query: 180 -------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 ++ ++N L + GE QV+L V IAE+ R + + G S+ + S +S Sbjct: 343 FGGASDLAAGFIINELRVPGEFQVSLTVRIAELNRSEMFKAGADISVLFNGSQLIESSLT 402 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 GG ++ G+ D +L L+ + L EP LT +SG+ A F +GG+ Sbjct: 403 ---------GGAATLGGIFDNGDVSILLDWLKTNGIGKILVEPRLTVLSGRQARFLAGGE 453 Query: 293 HLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 T+ GA S T +G + TPTVL I L E S+ + +P Sbjct: 454 FAVPTIIGIAGAQGQSTTFRGFGTSVLVTPTVLDRDLIRLSTIAEYSDLNQANSVQGIPG 513 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETE 409 R+ DTTVE+ G T+ LAGL ++ IP L IP +G ALF ++E E Sbjct: 514 TNARRIDTTVEMREGQTLALAGLYSHLMKTNISKIPFLGDIPKIGPALFSRKEKTQDENE 573 Query: 410 IFIAATPFLVKPVAMRDLSR-PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY-KG 467 + I TP +V+P+ ++ P + D + F++NR I G + + Y G Sbjct: 574 LLILITPDIVRPMDPEEVPPVPGFEVTYPGDHEFFWYNR---IEGTPDTGHYQVPPYGSG 630 Query: 468 AIG 470 + G Sbjct: 631 SNG 633 >gi|239814526|ref|YP_002943436.1| type II and III secretion system protein [Variovorax paradoxus S110] gi|239801103|gb|ACS18170.1| type II and III secretion system protein [Variovorax paradoxus S110] Length = 504 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 116/400 (29%), Positives = 196/400 (49%), Gaps = 29/400 (7%) Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-N 135 DV + SP ++ G+ G NV+L DG D+++ D L+ L + + + Sbjct: 121 VDVTLLSPTDLFFRGRQAGSMNVVLQSVDGTC-YIKDVIVTIDPGALQSKLAELMPEENH 179 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 IRV ++VL G + + L+ + + KKV+NLL + Q Sbjct: 180 IRVRSAEKSIVLTGEISDALKLDDVMSLAMAY----------GADGKKVVNLLRVTAPQQ 229 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V L+V IAEV + +L ++G + ++ + G S++ F+S GG + R S Sbjct: 230 VMLEVKIAEVSKTLLDRLGARVGLSRTGGGGRDSYS--LISSFLSGGGGLLEAIRIGRTS 287 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHD 311 + + +R LAEP + AISGQ ASF SGG+ S+ G ++ + Sbjct: 288 VG--IDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQSAAGGGGTNITLEEKE 345 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTVELP 363 +G+ + FTPTVL+ GR+ L++ +EVS+ + +PS VR+ADTTV+L Sbjct: 346 FGIGVKFTPTVLNGGRVNLKMISEVSDLSQTGSPFTTVTGVTAVLPSLTVRRADTTVQLN 405 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G + V+AGL+K ++ + + P L ++P++GALFR++ F ++TE+ TP LV+P+A Sbjct: 406 DGQSFVIAGLIKSNVTESIKRYPGLGEVPVMGALFRSTEFQNDQTELMFVITPRLVRPLA 465 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 P D++ V A+ + + A + Q Sbjct: 466 -EAPRVPTDNHVVPSRAEVYLNGSLESATPAPVAPAGQPQ 504 >gi|296121060|ref|YP_003628838.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] gi|296013400|gb|ADG66639.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] Length = 622 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 109/467 (23%), Positives = 191/467 (40%), Gaps = 40/467 (8%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANA--AVINISDVEIGKGK-KISIGLNKVI 58 R+ + + F S P + + A A + V+I + K+ I Sbjct: 9 RWRAALVWGLCLCQSFLSYPGLTSSSGMAFAQNGNAPVAGEVVQITASRTKLEIAERFAR 68 Query: 59 ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 ++Q P + V DP V + + + G G +++ +G + +D+++ Sbjct: 69 VVQFPRKILRVDGFDPAVLSVTALAHDQLRVQGITEGITTMVITDENG-AITTIDVMVAG 127 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L+ L R ++++ V + D V+L G V Q V++++ + Sbjct: 128 DARLLQAVLSREYPNTSVTVTKLKDNVLLRGWVVEPQQITEIVDIAKLY----------- 176 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------- 229 V+N + + G QV L+ + EV+R L+ +G + G + S + Sbjct: 177 --YPNVLNQMKMGGPQQVQLRCKVMEVQRSKLRSLGLNFTYLGRNVAFSSTPGAISPLDA 234 Query: 230 FAADFGG-------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 F GG + S+ V D F+F +L AL ++ AEPT+ SG Sbjct: 235 FTVPIGGPPGVGLAQSGFRNATMSLGIVGDDFAFGGLLEALREEGLLKIQAEPTIVTRSG 294 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 + A SGG+ V G ++ ++GV L P +LSP R+ I EVSE Sbjct: 295 EPAKIVSGGEFPIP-VPQGLGTIAIEWREFGVRLESVPMILSPNRLKQTIIAEVSERDLT 353 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + +N+ +P R +T VE+ G T+ + GL+ IP L ++P +GA F Sbjct: 354 NAVTLNSTTVPGLTKRTVETQVEMNFGQTLAIGGLISSRKTAQTSKIPFLGELPYVGAAF 413 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAF 443 R ++ ETE+ + TP V + + P +V D + F Sbjct: 414 RRVNYDEAETELLVLITPEFVSAMDPAQVPDRLPGTASAVPTDRELF 460 >gi|221067360|ref|ZP_03543465.1| type II and III secretion system protein [Comamonas testosteroni KF-1] gi|220712383|gb|EED67751.1| type II and III secretion system protein [Comamonas testosteroni KF-1] Length = 520 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 125/432 (28%), Positives = 204/432 (47%), Gaps = 50/432 (11%) Query: 51 SIGLNKVIILQVPVDVQDVLV-------------SDPTK--------ADVVVHSPRTMYL 89 ++ L K +++ + + +LV P +V + SPR ++ Sbjct: 52 TVTLGKSVVIPLNSPMARILVSGQTPGAGQAAANGQPQMQVQNGMGDIEVQLLSPRDLFF 111 Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLH 148 G+ G NVIL G + D+++ D L+ L + + IRV+ + +VL Sbjct: 112 RGRKSGSMNVILQNAQGACFIK-DVIVTMDPGPLQAKLSELMPEERSIRVQGADNALVLS 170 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G + V L+ + S SKK++NLL QV L+V IAE+ + Sbjct: 171 GEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQVMLEVKIAEISKT 219 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 +L ++G S +S S+ F+S GG L R S + + Sbjct: 220 LLDKLGSSLSGQRVTSNGQNSYT--VLSNFLSGGGGLLNAMRLGRGSIS--IDGQKDDGL 275 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSP 325 +R LAEP + AISGQ ASF SGG+ ++T V T ++G+ + FTPTVL Sbjct: 276 VRILAEPNIMAISGQQASFLSGGKIFIPVAQTNTNGVPVMTLEEKEFGIGVKFTPTVLGN 335 Query: 326 GRIGLRIQTEVSE------PVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 R+ L++ +EVS+ P +N +PS VR+ADTTV+L G ++V+AGL+K++ Sbjct: 336 SRVNLKLVSEVSDLSQTGSPFTSINGVTSVIPSLTVRRADTTVQLNDGQSLVIAGLIKNN 395 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 I + + P L +IP+LGAL R++ F ++TE+ TP LV+ +A P D++ V Sbjct: 396 ITEAIKRFPGLGEIPVLGALARSTEFQTDQTELMFVITPRLVQALA-EAPRVPTDNHVVP 454 Query: 438 DDAKAFFFNRVN 449 A+ + + Sbjct: 455 SRAEVYLNGALE 466 >gi|187923645|ref|YP_001895287.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] gi|187714839|gb|ACD16063.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] Length = 468 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 119/432 (27%), Positives = 188/432 (43%), Gaps = 37/432 (8%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 S+ A +A A + I + + + V +Q V + DP+ A Sbjct: 22 SAATDAAGPAQRAQAAPAAQPHQAAFAPPAQGIDLTVGAQRQIAVGHTLQRVAIGDPSVA 81 Query: 78 DVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 DV++ + L GK G N++L D L + + A + Sbjct: 82 DVLIIKGDKRGGVLLVGKAAGTTNLMLWSRDRDAPLQYTVNVTTPAAA------SLLGAD 135 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 V+++ T ++ G T++ QRAV +E L + G V + +A Sbjct: 136 TPAVKVLGGTAIVSGTSATMEAHQRAVVAAEGSLGKDGA----------VFDTSTVASRA 185 Query: 195 QVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 V + V + E R +LK++GF GS + + S + G+ S G + Sbjct: 186 VVQVDVRVVEFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVSATAGQAPSLTGVTPIS 245 Query: 249 GVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + L LE R LAEPTL A+SGQSASF +GG+ V + Sbjct: 246 SAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSASFLAGGEVPIP-VPQAL 304 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADT 358 G+TS+ YGV L TPTVLSP RI L++ E S+ + ++ +P++ R+ADT Sbjct: 305 GSTSIEFKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAFTTRRADT 364 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 TVEL G + V+ GL+ + +PLL +P++G F+ + + E E+ I TP L Sbjct: 365 TVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLNYQQNEKELVIIVTPHL 424 Query: 419 VKPVAMRDLSRP 430 V P+A R + P Sbjct: 425 VSPLA-RGATLP 435 >gi|296158794|ref|ZP_06841623.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] gi|295890999|gb|EFG70788.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] Length = 474 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 117/441 (26%), Positives = 190/441 (43%), Gaps = 36/441 (8%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 +L + + + + +A A ++I++ + L Sbjct: 12 AWLGVALLAVSAATDAAGPAPRGQAAQAAQAAQAAQAAQPALAAPAQRIALTVGAQQQLA 71 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 V +Q V + DP+ ADV++ + L GK G N++L D L + + Sbjct: 72 VGHTLQRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARDRDAPLQYTVDVTT 131 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 A + V+++ T V+ G T++ QRAV +E L + G Sbjct: 132 PAAA------SLLGPDTPAVKVLGGTAVVSGTSATMEAHQRAVVAAEGSLGKDGA----- 180 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAA 232 V + +A V + V + E R +LK++GF GS + + S + Sbjct: 181 -----VFDTSTVASRAVVQVDVRVVEFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVS 235 Query: 233 DFGGKFVSEGGDFSVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSAS 286 G+ S G + + L LE R LAEPTL A+SGQSAS Sbjct: 236 ATAGQAPSMTGVTPISSAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSAS 295 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIG 342 F +GG+ V + G+TS+ YG+ L TPTVLSP RI L++ E S+ + Sbjct: 296 FLAGGEVPIP-VPQALGSTSIEFKPYGIGLTLTPTVLSPQRIALKVAPEASQLDFANAVT 354 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++ +P++ R+ADTTVEL G + V+ GL+ + +PLL +P++G F+ Sbjct: 355 ISGVSVPAFITRRADTTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLN 414 Query: 403 FNREETEIFIAATPFLVKPVA 423 + + E E+ I TP LV P+A Sbjct: 415 YQQNEKELVIIVTPHLVSPLA 435 >gi|91783011|ref|YP_558217.1| putative outer membrane channel signal peptide protein, CpaC like [Burkholderia xenovorans LB400] gi|91686965|gb|ABE30165.1| Putative outer membrane channel signal peptide protein, CpaC like protein [Burkholderia xenovorans LB400] Length = 454 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 119/467 (25%), Positives = 196/467 (41%), Gaps = 36/467 (7%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 M+++ + A+ +A A ++I++ + L V +Q + Sbjct: 1 MLAVSAATDAAGPAQRGQAAQAAQAAQAAQPTLAAPAQRIALTVGAQQQLAVGHTLQRIA 60 Query: 71 VSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 + DP+ ADV++ + L GK G N++L D L + + A Sbjct: 61 IGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARDRDAPLQYTVDVTTPAAA----- 115 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + V+++ T V+ G T++ QRAV +E L + G V + Sbjct: 116 -SLLGPDTPAVKVLGGTAVVSGTSATMEAHQRAVVAAEGSLGKDGA----------VFDT 164 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGGKFVSE 241 +A V + V + E R +LK++GF GS + + S + G+ S Sbjct: 165 STVASRAVVQVDVRVVEFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVSATAGQAPSM 224 Query: 242 GGDFSVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G + + L LE R LAEPTL A+SGQSASF +GG+ Sbjct: 225 TGVTPISSAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSASFLAGGEVPI 284 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSY 351 V + G TS+ YG+ L TPTVLSP RI L++ E S+ + ++ +P++ Sbjct: 285 P-VPQALGTTSIEFKPYGIGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAF 343 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ADTTVEL G + V+ GL+ + +PLL +P++G F+ + + E E+ Sbjct: 344 ITRRADTTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLNYQQNEKELV 403 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 I TP LV P+A E + + + + A Sbjct: 404 IIVTPHLVSPLAKGATLPSTPGEQSEQRNGPVWRSLIGGVAARDSAP 450 >gi|206559894|ref|YP_002230658.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|198035935|emb|CAR51827.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 443 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 129/471 (27%), Positives = 200/471 (42%), Gaps = 51/471 (10%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 + + S +PP+ +A IS + IG ++I+ G +Q V V D Sbjct: 5 LIGLAIALSALAMPPLSDAADTSGTIS-LAIGAQRQIATG----------RALQRVAVGD 53 Query: 74 PTKADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 P+ ADV+V + L KN G NV++ + ++ + A R + Sbjct: 54 PSVADVLVVKGGRGGVLLVAKNAGATNVMIWERGRDEPTVYNVNVTSGAA------RALL 107 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 ++ V T V+ G T+ QRAV ++T + G ++ I+ Sbjct: 108 DGTSPSVNTYGGTTVIGGAAGTLDGHQRAVHAAKTVGGKDGTT----------LDASTIS 157 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFGGKF-----V 239 G++ V + V + E R +LKQ G S + S + GG V Sbjct: 158 GKNVVQVDVRVVEFSRSVLKQAGLNFFKQSNGFSFGAFAPTGLTSISGTPGGSLTYNTSV 217 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 F++ L LE R LA+PTL A+SGQSA+F +GG+ V Sbjct: 218 PISSAFNLVVNSVSRGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VP 276 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRK 355 S G S+ YGV L TPTVLSP RI L++ E S+ I +N+ +P+ R+ Sbjct: 277 QSLGTISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRR 336 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ADTTVEL G + V+ GL+ + +P L +PI+GA F+N + + + E+ I T Sbjct: 337 ADTTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVT 396 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 P LV P+A + P + + V + Y AS G + Sbjct: 397 PHLVAPIA-QGAPLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442 >gi|78066131|ref|YP_368900.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383] gi|77966876|gb|ABB08256.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383] Length = 443 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 125/471 (26%), Positives = 196/471 (41%), Gaps = 51/471 (10%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 + + S +PP+ A IS + +G ++++ G +Q V V D Sbjct: 5 LIGLAIALSALAMPPLSGAADTSGTIS-LAVGAQRQLATG----------RALQRVAVGD 53 Query: 74 PTKADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 P+ ADV+V + L K+ G NV++ + ++ + A R + Sbjct: 54 PSVADVMVVKGGRGGVLLIAKSAGATNVMIWERGHDEPTVYNVSVTSGAA------RALL 107 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 V T V+ G ++ QRAV ++T + G ++ I+ Sbjct: 108 DGGTSSVNTYGGTTVIGGASGSLDGHQRAVHAAKTVSGKDGTT----------IDASTIS 157 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFGGKF-----V 239 G++ V + V + E R +LKQ G S + S GG V Sbjct: 158 GKNVVQVDVRVVEFSRSVLKQAGLNFFKQSNGFSFGAFAPTGLTSITGSPGGALTYNTNV 217 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 F++ L LE R LA+PTL A+SGQSA+F +GG+ V Sbjct: 218 PISSAFNLVVNSVSHGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VP 276 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRK 355 S G S+ YGV L TPTVL+P RI L++ E S+ I +N +P+ R+ Sbjct: 277 QSLGTISIEWKPYGVGLTVTPTVLNPRRIALKVAPESSQLDFVHSITINGVQVPALTTRR 336 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ADTTVEL G + V+ GL+ + +P L +PI+GA F+N + + + E+ I T Sbjct: 337 ADTTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQSDKELVIIVT 396 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 P LV P+A + S P + + V + Y AS G + Sbjct: 397 PHLVAPIA-QGASLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442 >gi|322419944|ref|YP_004199167.1| type II and III secretion system protein [Geobacter sp. M18] gi|320126331|gb|ADW13891.1| type II and III secretion system protein [Geobacter sp. M18] Length = 493 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 121/455 (26%), Positives = 186/455 (40%), Gaps = 44/455 (9%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV--L 70 + ++ AK + E A +++ G I + + D + Sbjct: 52 VLVTLANTKKEAKERDVDETVAVPNSVATATATDGSTIVLPASVTRTRSSEADTGNTNKF 111 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDILIERDIAHLEMT 126 V P S + L G +G ++I+ D+ + D +E Sbjct: 112 VV-PEI-----LSEYVLKLDGTAIGSTSMIIWTKGEGDERPAPTFFDLKVTGDREAIENQ 165 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L+ I V+ SDTVVL G V Q +A E+++ F KV+N Sbjct: 166 LKEMAPKETIVVQYASDTVVLSGNVANDQTKTKAFEIAKAFA-------------PKVIN 212 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 + + QV L+V +A+V + LK++G I GS++ + A G V+ G + Sbjct: 213 NMTVNVPQQVLLQVKVAQVDKSSLKKLGISFLIKGSTAEGFSNLVAGPDGA-VTGIGTGA 271 Query: 247 VKGVLDRFSFE--------------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G+ D S + VL AL + LAEP L S Q F +G + Sbjct: 272 ATGIGDFPSLDSFQAGVSYFPAGIGAVLSALSSKGLAKVLAEPNLLVRSSQEGYFLAGSK 331 Query: 293 HLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGDMP 349 + S+ G TS+ G+ L F P VL G I L+I EVS + P Sbjct: 332 IPIAILESTGGQATTSIRYEPVGIKLKFKPEVLENGMISLKINPAEVSSIQGFLPVNGYP 391 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R +T+VEL G +++LAGLL++D + IPLL IPILGALFR+S + +E E Sbjct: 392 IIDTRTVETSVELKDGESLILAGLLQEDEIKNMSKIPLLGDIPILGALFRSSSSDIKEKE 451 Query: 410 IFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAF 443 + TP +V+P A + P D + K Sbjct: 452 LVFFITPKIVQPTAPGVKVEMPTDKKLTPEQEKEL 486 >gi|322434104|ref|YP_004216316.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] gi|321161831|gb|ADW67536.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] Length = 484 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 118/467 (25%), Positives = 202/467 (43%), Gaps = 46/467 (9%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81 SV A+ A + ++G + + + + ++L +++ + V +PT Sbjct: 34 SVQAPGDSPTAHEARKRMDMHDMGGDETLHLLVGHSMVLHSTSNIKRIFVGNPTVLQSYT 93 Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141 P + L K G +++++ G+ L I + D L+ ++ S I V Sbjct: 94 GGPSEIVLTAKATGVSSLVVWDTQGQSCL-YTIAADMDPETLQRSMHDAYPKSQIDVGGH 152 Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLK 199 + L G V T + S A +L+ ++ SK V+N + + QV LK Sbjct: 153 EGRIFLSGTVPTQEASDNAFKLASSY-------------SKDVVNSIRVVTIHGKQVQLK 199 Query: 200 VTIAEVRRDILKQIGFQ-------HSITGSSSGPSKSFAADFGGKFVSEGGD-----FSV 247 + I EV R ++Q G +++ G ++G S A G + +V Sbjct: 200 LRIVEVDRTKMEQFGINLFRPTASNAVGGLTTGQFPSLATYATGTPATATAPAVPATINV 259 Query: 248 KGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 L+ F + LE+ ++ LAEPTLTA+SGQSA F SGG+ + V Sbjct: 260 NNPLNFFIYSFSHEIGATIQDLEQKQILQVLAEPTLTAMSGQSAKFLSGGEFPFPVVQGG 319 Query: 302 TGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRV 353 A +++ YGV + FTPTV G I L++ EVS + ++ +P+ Sbjct: 320 GSAAGVAITISFRPYGVKVDFTPTVNEDGSIHLKVAPEVSTLDFSNAVTISGFTIPALST 379 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETEIFI 412 R+A+T VE+ +G T L GLL + IP +S++PILG LF + E+ + Sbjct: 380 RRAETEVEILNGQTFALTGLLDHRTTESLSQIPGISRLPILGKLFATTKSYTHSVIELVV 439 Query: 413 AATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 T +V P D ++PD +V + K+ F N ++K + Sbjct: 440 LVTANVVDPLTQPTDTTQPD--MAVPNLDKSVFDNDLSKEQKLPKKP 484 >gi|116620532|ref|YP_822688.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223694|gb|ABJ82403.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 529 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 104/416 (25%), Positives = 188/416 (45%), Gaps = 34/416 (8%) Query: 40 SDVEIGKGK-KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 DV+ G K+ + + K +I+ P+++Q + V++ + V +P+ + + GK G+ Sbjct: 52 QDVQPAPGPGKLMVTVGKSLIIDSPMNIQRISVANGELIEAVAVNPKEVLINGKAAGETT 111 Query: 99 VILIGHDG-KQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 +I+ G + + +L + I + + L R D I V ++ + G V+ + Sbjct: 112 LIIWQQGGNRLLYDLTVRISPVRLDVVRQQLARDFPDDEINVTYDNEVAFVRGRVKDLSA 171 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTIAEVRRDILKQI 213 + R + ++ +S K +NLL + E Q+ L V A V R + Sbjct: 172 ADRVMAIA--------------ASLGKTVNLLRVDVPPVETQILLHVRFANVDRGASTDL 217 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD------RFSFETVLHALERAT 267 G + TG+ + + + V G S+ L+ + + ALE Sbjct: 218 GVSLA-TGAFNQSTAITTGQYPPPTVGTDGRVSISDALNILLFRKDINLGATIKALESKR 276 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSP 325 + TLAEP + AI+G+ A+F +GG+ V GA S+T ++G+ ++F P + Sbjct: 277 MLETLAEPNVMAINGKPAAFIAGGEFPVPMVQGGGLAGAVSITFREFGIRINFLPKITPR 336 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 G I L + EVS + +P+ R+ T VEL +G + V+AGLL + + Sbjct: 337 GTIQLAVAPEVSSLDYSNAVTFQGYTIPALATRRIQTEVELETGQSFVIAGLLDNRTTET 396 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 IP LS IP+LG LF++ + TE+ + TP +V+P+ P + +V Sbjct: 397 LNKIPGLSNIPLLGKLFQSRAVAKNNTELMVIVTPEIVRPIQAGQ-PLPSLNMTVP 451 >gi|53719509|ref|YP_108495.1| putative exported fimbriae assembly protein [Burkholderia pseudomallei K96243] gi|76808601|ref|YP_333341.1| type II/III secretion system protein [Burkholderia pseudomallei 1710b] gi|121598954|ref|YP_993098.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|124383520|ref|YP_001026125.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] gi|126440403|ref|YP_001058807.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|134282202|ref|ZP_01768907.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|167002482|ref|ZP_02268272.1| type II/III secretion system protein [Burkholderia mallei PRL-20] gi|167719788|ref|ZP_02403024.1| type II/III secretion system protein [Burkholderia pseudomallei DM98] gi|167738786|ref|ZP_02411560.1| type II/III secretion system protein [Burkholderia pseudomallei 14] gi|167816009|ref|ZP_02447689.1| type II/III secretion system protein [Burkholderia pseudomallei 91] gi|167845916|ref|ZP_02471424.1| type II/III secretion system protein [Burkholderia pseudomallei B7210] gi|167894492|ref|ZP_02481894.1| type II/III secretion system protein [Burkholderia pseudomallei 7894] gi|167902899|ref|ZP_02490104.1| type II/III secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|237812067|ref|YP_002896518.1| bacterial type II/III secretion system protein [Burkholderia pseudomallei MSHR346] gi|238562618|ref|ZP_00440075.2| bacterial type II/III secretion system protein [Burkholderia mallei GB8 horse 4] gi|242315526|ref|ZP_04814542.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|254177827|ref|ZP_04884482.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|254179957|ref|ZP_04886556.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|254188633|ref|ZP_04895144.1| type II/III secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254198005|ref|ZP_04904427.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|254260610|ref|ZP_04951664.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] gi|254358355|ref|ZP_04974628.1| type II/III secretion system protein [Burkholderia mallei 2002721280] gi|52209923|emb|CAH35895.1| putative exported fimbriae assembly protein [Burkholderia pseudomallei K96243] gi|76578054|gb|ABA47529.1| type II/III secretion system protein [Burkholderia pseudomallei 1710b] gi|121227764|gb|ABM50282.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|124291540|gb|ABN00809.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] gi|126219896|gb|ABN83402.1| type II/III secretion system protein [Burkholderia pseudomallei 668] gi|134246240|gb|EBA46329.1| type II/III secretion system protein [Burkholderia pseudomallei 305] gi|148027482|gb|EDK85503.1| type II/III secretion system protein [Burkholderia mallei 2002721280] gi|157936312|gb|EDO91982.1| type II/III secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|160698866|gb|EDP88836.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|169654746|gb|EDS87439.1| type II/III secretion system protein [Burkholderia pseudomallei S13] gi|184210497|gb|EDU07540.1| type II/III secretion system protein [Burkholderia pseudomallei 1655] gi|237503987|gb|ACQ96305.1| bacterial type II/III secretion system protein [Burkholderia pseudomallei MSHR346] gi|238522203|gb|EEP85649.1| bacterial type II/III secretion system protein [Burkholderia mallei GB8 horse 4] gi|242138765|gb|EES25167.1| type II/III secretion system protein [Burkholderia pseudomallei 1106b] gi|243061822|gb|EES44008.1| type II/III secretion system protein [Burkholderia mallei PRL-20] gi|254219299|gb|EET08683.1| type II/III secretion system protein [Burkholderia pseudomallei 1710a] Length = 441 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 117/454 (25%), Positives = 191/454 (42%), Gaps = 50/454 (11%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MY 88 A AA ++ G ++I++G VQ V ++DP ADV+V + Sbjct: 19 AARAAETGTIELAAGTQRQIAVGHG----------VQRVAIADPNVADVLVIKGGRGGVL 68 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 L K G ++++ + + + A R + + V+ + T V+ Sbjct: 69 LVAKAAGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVA 122 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G T+ RA+ + + + G V+++ + G++ V + V + E R Sbjct: 123 GSAATLDAHARALAVGKGMAGKDG----------GVLDVSTVGGKNVVQVDVRVVEFSRS 172 Query: 209 ILKQIGFQH-----SITGSSSGPSKSFAADFGGKF-------VSEGGDFSVKGVLDRFSF 256 +LKQ G T S P+ + GG + F++ Sbjct: 173 VLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGL 232 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 L LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L Sbjct: 233 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 291 Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 TPTVLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + + G Sbjct: 292 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGG 351 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L+ + + +P L +PI+G F++ + + + E+ I TP LV P+A ++ S P Sbjct: 352 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 408 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + V + Y S G + Sbjct: 409 --ATPGELSEQRDGPVWRSYLGGVLSPDAGPGFS 440 >gi|299532592|ref|ZP_07045981.1| type II and III secretion system protein [Comamonas testosteroni S44] gi|298719395|gb|EFI60363.1| type II and III secretion system protein [Comamonas testosteroni S44] Length = 520 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 123/445 (27%), Positives = 204/445 (45%), Gaps = 50/445 (11%) Query: 51 SIGLNKVIILQVPVDVQDVLVS--DPTK-------------------ADVVVHSPRTMYL 89 ++ L K +++ + + +LVS P +V + SPR ++ Sbjct: 50 TVTLGKSVVIPLNSPMARILVSGQTPGVGQAAANGQPQMQVQNGMGDIEVQLLSPRDLFF 109 Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLH 148 G+ G NVIL G + D+++ D L+ L + + IRV+ + +VL Sbjct: 110 RGRKSGSMNVILQNAQGACFIK-DVIVTMDPGPLQTKLSELMPEERGIRVQGADNALVLS 168 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G + V L+ + S SKK++NLL QV L+V IAEV + Sbjct: 169 GEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQVMLEVKIAEVSKT 217 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 +L ++G + +S +F+ F+S GG + + S + + Sbjct: 218 LLDKLGASLAGQRITSNGMNTFS--IASNFLSGGGGLLSAMRIGKGSIS--IDGQKDDGL 273 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSP 325 +R LAEP + AISGQ ASF SGG+ S+T V T ++G+ + FTPTVL Sbjct: 274 VRILAEPNIMAISGQQASFLSGGKIFIPVSQSNTNGVPVMTLEEKEFGIGVKFTPTVLGS 333 Query: 326 GRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 R+ L++ +EVS+ + +PS VR+ADTTV+L G ++V+AGL+K++ Sbjct: 334 SRVNLKLVSEVSDLSQTGSPFTAINGVTSVIPSLSVRRADTTVQLNDGQSLVIAGLIKNN 393 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 I + + P L +IP+LGAL R++ F ++TE+ TP LV+ +A P D++ Sbjct: 394 ITEAVKRFPGLGEIPVLGALARSTEFQTDQTELMFIITPRLVQALA-EAPRVPTDNHVPP 452 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEG 462 A+ + + V Sbjct: 453 SRAEVYLNGALESSKPASAVKTVPA 477 >gi|107022594|ref|YP_620921.1| type II and III secretion system protein [Burkholderia cenocepacia AU 1054] gi|116689543|ref|YP_835166.1| type II and III secretion system protein [Burkholderia cenocepacia HI2424] gi|170732847|ref|YP_001764794.1| type II and III secretion system protein [Burkholderia cenocepacia MC0-3] gi|105892783|gb|ABF75948.1| type II and III secretion system protein [Burkholderia cenocepacia AU 1054] gi|116647632|gb|ABK08273.1| type II and III secretion system protein [Burkholderia cenocepacia HI2424] gi|169816089|gb|ACA90672.1| type II and III secretion system protein [Burkholderia cenocepacia MC0-3] Length = 443 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 128/471 (27%), Positives = 199/471 (42%), Gaps = 51/471 (10%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 + + S +PP+ +A IS + IG ++I+ G +Q V V D Sbjct: 5 LIGLAIALSALAMPPLSDAADTSGTIS-LAIGAQRQIATG----------RALQRVAVGD 53 Query: 74 PTKADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 P+ ADV+V + L KN G NV++ + ++ + A R + Sbjct: 54 PSVADVLVVKGGRGGVLLVAKNAGATNVMIWERGRDEPTVYNVNVTSGAA------RALL 107 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 ++ V T V+ G T+ QRAV ++T + G ++ I+ Sbjct: 108 DGTSPSVNTYGGTTVIGGAAGTLDGHQRAVHAAKTVGGKDGTT----------LDASTIS 157 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFGGKF-----V 239 G++ V + V + E R +LKQ G + + S GG V Sbjct: 158 GKNVVQVDVRVVEFSRSVLKQAGLNFFKQSNGFAFGAFAPTGLTSITGTPGGSLTYNTSV 217 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 F++ L LE R LA+PTL A+SGQSA+F +GG+ V Sbjct: 218 PISSAFNLVVNSVSRGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VP 276 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRK 355 S G S+ YGV L TPTVLSP RI L++ E S+ I +N+ +P+ R+ Sbjct: 277 QSLGTISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRR 336 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ADTTVEL G + V+ GL+ + +P L +PI+GA F+N + + + E+ I T Sbjct: 337 ADTTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVT 396 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 P LV P+A + P + + V + Y AS G + Sbjct: 397 PHLVAPIA-QGAPLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442 >gi|167911136|ref|ZP_02498227.1| type II/III secretion system protein [Burkholderia pseudomallei 112] Length = 432 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 118/454 (25%), Positives = 192/454 (42%), Gaps = 50/454 (11%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MY 88 A AA ++ G ++I++G VQ V ++DP ADV+V + Sbjct: 10 AARAAETGTIELAAGTQRQIAVGHG----------VQRVAIADPNVADVLVIKGGRGGVL 59 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 L K G ++++ + + + A R + + V+ + T V+ Sbjct: 60 LVAKAAGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVA 113 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G T+ RA+ + + + G V+++ + G++ V + V + E R Sbjct: 114 GSAATLDAHARALAVGKGMAGKDG----------GVLDVSTVGGKNVVQVDVRVVEFSRS 163 Query: 209 ILKQIGFQH-----SITGSSSGPSKSFAADFGGKF-------VSEGGDFSVKGVLDRFSF 256 +LKQ G T S P+ + GG + F++ Sbjct: 164 VLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGL 223 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 L LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L Sbjct: 224 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 282 Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 TPTVLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ G Sbjct: 283 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGG 342 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L+ + + +P L +PI+G F++ + + + E+ I TP LV P+A ++ S P Sbjct: 343 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 399 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + V + Y S G + Sbjct: 400 --ATPGELSEQRDGPVWRSYLGGVLSPDAGPGFS 431 >gi|167587316|ref|ZP_02379704.1| type II and III secretion system protein [Burkholderia ubonensis Bu] Length = 477 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 109/460 (23%), Positives = 184/460 (40%), Gaps = 54/460 (11%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHD 105 I + + + +Q V V DP+ ADV++ + L K G NV+L Sbjct: 29 SIDLAVGSQRQIAAGRALQRVAVGDPSVADVLIMKGSRAGAVLLVAKAPGSTNVMLWERG 88 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + ++ + ++ + S + D VL G ++ +RA + + Sbjct: 89 RDEPMVWNVNV------VDAAAHAVLDSSTPDAKAYGDVAVLSGSAASLDAHERAAAIGQ 142 Query: 166 TFL-----------------------SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 + V++ + G + V + V + Sbjct: 143 HMADKGGAAAGGNWGAGDAGATGKRGGGASGTLGKAGKGGAVIDASTVGGRNTVQVDVRV 202 Query: 203 AEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGV 250 E R +LK+ G + ++G +S F + G F++ Sbjct: 203 VEFSRSVLKEAGLNFFKQSNGFAFGAFTAGGLQSITGAATSAFQATAGIPVASAFNLVAN 262 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L LE R LA+PTL A+SGQSASF +GG+ V + G+T++ Sbjct: 263 SAGRGIFANLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIQWK 321 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGG 366 YGV L TPTVLSP RI L++ E S+ + +N+ +P+ R+ADTTVEL G Sbjct: 322 QYGVGLTLTPTVLSPRRIALKVAPESSQLDFLHGVTINSVAVPAITTRRADTTVELGDGE 381 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + V+ GL+ + +P+L +PI+GA F+ + + + E+ I TP LV P+A + Sbjct: 382 SFVIGGLIDRETMSNVNKVPVLGDLPIIGAFFKTLNYQQNDKELVIIVTPHLVAPIA-KG 440 Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 S P + + V + Y AS + Sbjct: 441 ASLP----ATPGELSEQRDGPVWRSYLGGIASPDAAPGFS 476 >gi|53723520|ref|YP_102954.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|126448299|ref|YP_001080603.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|126452556|ref|YP_001066058.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|167824385|ref|ZP_02455856.1| type II/III secretion system protein [Burkholderia pseudomallei 9] gi|217423417|ref|ZP_03454918.1| type II/III secretion system protein [Burkholderia pseudomallei 576] gi|226199666|ref|ZP_03795219.1| type II/III secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|254199896|ref|ZP_04906262.1| type II/III secretion system protein [Burkholderia mallei FMH] gi|254206228|ref|ZP_04912580.1| type II/III secretion system protein [Burkholderia mallei JHU] gi|254297793|ref|ZP_04965246.1| type II/III secretion system protein [Burkholderia pseudomallei 406e] gi|52426943|gb|AAU47536.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|126226198|gb|ABN89738.1| type II/III secretion system protein [Burkholderia pseudomallei 1106a] gi|126241169|gb|ABO04262.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|147749492|gb|EDK56566.1| type II/III secretion system protein [Burkholderia mallei FMH] gi|147753671|gb|EDK60736.1| type II/III secretion system protein [Burkholderia mallei JHU] gi|157807445|gb|EDO84615.1| type II/III secretion system protein [Burkholderia pseudomallei 406e] gi|217393275|gb|EEC33296.1| type II/III secretion system protein [Burkholderia pseudomallei 576] gi|225928252|gb|EEH24286.1| type II/III secretion system protein [Burkholderia pseudomallei Pakistan 9] Length = 432 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 117/454 (25%), Positives = 191/454 (42%), Gaps = 50/454 (11%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MY 88 A AA ++ G ++I++G VQ V ++DP ADV+V + Sbjct: 10 AARAAETGTIELAAGTQRQIAVGHG----------VQRVAIADPNVADVLVIKGGRGGVL 59 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 L K G ++++ + + + A R + + V+ + T V+ Sbjct: 60 LVAKAAGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVA 113 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G T+ RA+ + + + G V+++ + G++ V + V + E R Sbjct: 114 GSAATLDAHARALAVGKGMAGKDG----------GVLDVSTVGGKNVVQVDVRVVEFSRS 163 Query: 209 ILKQIGFQH-----SITGSSSGPSKSFAADFGGKF-------VSEGGDFSVKGVLDRFSF 256 +LKQ G T S P+ + GG + F++ Sbjct: 164 VLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGL 223 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 L LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L Sbjct: 224 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 282 Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 TPTVLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + + G Sbjct: 283 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGG 342 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L+ + + +P L +PI+G F++ + + + E+ I TP LV P+A ++ S P Sbjct: 343 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 399 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + V + Y S G + Sbjct: 400 --ATPGELSEQRDGPVWRSYLGGVLSPDAGPGFS 431 >gi|325518465|gb|EGC98164.1| pilus assembly protein [Burkholderia sp. TJI49] Length = 429 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 115/445 (25%), Positives = 184/445 (41%), Gaps = 45/445 (10%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVI 100 I + + + +Q V V DP ADV++ ++ L K G NV+ Sbjct: 7 ASASGTIELAVGTQRQISAGRSLQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGATNVM 66 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + + + ++ + DS RV T VL G ++ +RA Sbjct: 67 LWERGRDEPTVWSVEV------VDAAAHAVLDDSTPRVNAYGGTAVLRGTSASLDAHERA 120 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217 V + + + V++ +AG++ V + V + E R +LKQ+GF Sbjct: 121 VAVGKNMAGKGA-----------VIDRSTLAGKNVVQVDVRVVEFSRSVLKQVGFNFFKQ 169 Query: 218 ----SITGSSSGPSKSFAADFGGKF--------VSEGGDFSVKGVLDRFSFETVLHALER 265 S S G +S+ G F++ L LE Sbjct: 170 SNGFSFGSFSPGGVQSYGGGSGPGTAGYIPTLGSPVASAFNLVVNAAGHGIFGDLSLLEA 229 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R LAEPTL A+SGQSASF +GG+ + + G+T++ YG+ L TPTVLSP Sbjct: 230 NNLARVLAEPTLVALSGQSASFLAGGEIPFPS-PQGLGSTAIQWKQYGIGLSLTPTVLSP 288 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 289 QRIALKVAPESSQLDYVNSVTISGVSVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 348 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL +PI+G F+N + + + E+ I TP LV P+A + + P + + Sbjct: 349 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIA-KGAALP----ATPGELS 403 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 404 EQRDGPVWRSYLGGVASPDAAPGFS 428 >gi|167919159|ref|ZP_02506250.1| type II/III secretion system protein [Burkholderia pseudomallei BCC215] Length = 432 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 117/454 (25%), Positives = 191/454 (42%), Gaps = 50/454 (11%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MY 88 A AA ++ G ++I++G VQ V ++DP ADV+V + Sbjct: 10 AARAAETGAIELAAGTQRQIAVGHG----------VQRVAIADPNVADVLVIKGGRGGVL 59 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 L K G ++++ + + + A R + + V+ + T V+ Sbjct: 60 LVAKAAGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVA 113 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G T+ RA+ + + + G V+++ + G++ V + V + E R Sbjct: 114 GSAATLDAHARALAVGKGMAGKDG----------GVLDVSTVGGKNVVQVDVRVVEFSRS 163 Query: 209 ILKQIGFQH-----SITGSSSGPSKSFAADFGGKF-------VSEGGDFSVKGVLDRFSF 256 +LKQ G T S P+ + GG + F++ Sbjct: 164 VLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGL 223 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 L LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L Sbjct: 224 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 282 Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 TPTVLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + + G Sbjct: 283 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGG 342 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L+ + + +P L +PI+G F++ + + + E+ I TP LV P+A ++ S P Sbjct: 343 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 399 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + V + Y S G + Sbjct: 400 --ATPGELSEQRDGPVWRSYLGGVLSPDAGPGFS 431 >gi|264678238|ref|YP_003278145.1| type II and III secretion system protein [Comamonas testosteroni CNB-2] gi|262208751|gb|ACY32849.1| type II and III secretion system protein [Comamonas testosteroni CNB-2] Length = 523 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 124/442 (28%), Positives = 205/442 (46%), Gaps = 52/442 (11%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK-----------------------ADV 79 I ++ L K +++ + + +LVS T +V Sbjct: 43 AIRTEDPTTVTLGKSVVIPLSSPMARILVSGQTPGAGQAAAPMAANAQPQMQNGMGDIEV 102 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRV 138 + SPR ++ G+ G NVIL G + D+++ D L+ L + + IRV Sbjct: 103 QLLSPRDLFFRGRKSGSMNVILQNAQGACFIK-DVIVTMDPGPLQAKLSELMPEERSIRV 161 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + + +VL G + V L+ + S SKK++NLL QV L Sbjct: 162 QGADNALVLSGEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQVML 210 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 +V IAEV + +L ++G + +S +F+ F+S GG + + S Sbjct: 211 EVKIAEVSKTLLDKLGASLAGQRITSNGMNTFS--IASNFLSGGGGLLSAMRIGKGSIS- 267 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---HDYGVV 315 + + +R LAEP + AISGQ ASF SGG+ S+T V T ++G+ Sbjct: 268 -IDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQSNTTGVPVMTLEEKEFGIG 326 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTVELPSGGT 367 + FTPTVL R+ L++ +EVS+ + +PS VR+ADTTV+L G + Sbjct: 327 VKFTPTVLGGSRVNLKLVSEVSDLSQTGSPFTAINGVTSVIPSLSVRRADTTVQLNDGQS 386 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +V+AGL+K++I + + P L +IP+LGAL R++ F ++TE+ TP LV+ +A Sbjct: 387 LVIAGLIKNNITEAVKRFPGLGEIPVLGALARSTEFQTDQTELMFIITPRLVQALA-EAP 445 Query: 428 SRPDDHYSVEDDAKAFFFNRVN 449 P D++ V A+ + + Sbjct: 446 RVPTDNHVVPSRAEVYLNGALE 467 >gi|161524905|ref|YP_001579917.1| type II and III secretion system protein [Burkholderia multivorans ATCC 17616] gi|189350345|ref|YP_001945973.1| pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|160342334|gb|ABX15420.1| type II and III secretion system protein [Burkholderia multivorans ATCC 17616] gi|189334367|dbj|BAG43437.1| pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 443 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 115/445 (25%), Positives = 179/445 (40%), Gaps = 45/445 (10%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVI 100 I + + + +Q V V DP ADV++ ++ L K G NV+ Sbjct: 21 ASASGTIELAVGAQRQISAGRPLQRVAVGDPAIADVLIMKGSRSSSVLLIAKAPGATNVM 80 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + + + ++ + DS RV T VL G ++ +RA Sbjct: 81 LWERGRDEPTVWSVEV------VDAAAHAVLDDSAPRVNAYGGTAVLRGTSASLDAHERA 134 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--S 218 V + + + V++ +AG+ V + V + E R +LKQ+GF Sbjct: 135 VAVGKNMAGKGA-----------VIDRSTLAGKSVVQVDVRVVEFSRSVLKQVGFNFFKQ 183 Query: 219 ITGSSSGPSKSFAADFGGKFVSE-------------GGDFSVKGVLDRFSFETVLHALER 265 G S G G F++ L LE Sbjct: 184 SNGFSFGSFLPSGVQSFGGGSGPGSAGYIPTLGSPVASAFNLVVNAAGRGIFGDLSLLEA 243 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R LAEPTL A+SGQSASF +GG+ + G+T++ YGV L TPTVLSP Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVLSP 302 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL +PI+G F+N + + + E+ I TP LV P+A + + P + + Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIA-KGAALP----ATPGELS 417 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 418 EQRDGPVWRSYLGGVASPDAAPGFS 442 >gi|293606490|ref|ZP_06688848.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553] gi|292815113|gb|EFF74236.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553] Length = 458 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 121/480 (25%), Positives = 205/480 (42%), Gaps = 43/480 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M+ QRT M L ++ + + + A N + +I +++ + ++L Sbjct: 1 MKRYQRTT---MICVLSAAVAMTYGVVSLAQTTAPGANAAARDIA----VAVKGQQSLML 53 Query: 61 QVPVDVQDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 + + DP ADV + ++ L+GK G + + + ++ Sbjct: 54 DGAAP-SRIAIGDPEVADVKILPASGKRAGSLLLYGKKAGTTQLQIWTGNNPTPQIWNVR 112 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + ++ L V++ D VL G T A + + + Sbjct: 113 VA---GSVQAALASRGIQGGPNVDIAGDKAVLSGNAETPLAQIAAAQAAAAAVGD----- 164 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSFAADF 234 K V+++ V ++V + EV R ++KQ G + G +G S + + Sbjct: 165 ------KNVVDVSTAGAGGVVQVEVKVVEVSRSVMKQAGINFAASNGPWAGTSATAPSGL 218 Query: 235 GGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G G G D +F L L+ R LAEPTL A++GQSASF +GG Sbjct: 219 GAPLGFTPGGIIASGFSLFYDSNNFSARLRLLQSNGMARVLAEPTLVALTGQSASFLAGG 278 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIG 342 + G T+VT +G+ L TPTVLS RI L++ E SE Sbjct: 279 ELPIPEA-GGLGTTTVTFKPFGIGLTVTPTVLSRDRISLKVAPEASELDYSNGIAINTSA 337 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + +P+ R R+ADTTVEL G + V++GL+ + + +P+L +PI+GA FR+ Sbjct: 338 DTSTIIPALRTRRADTTVELGDGESFVISGLVSRQTKAMVNKVPMLGDLPIIGAFFRSVD 397 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 +++E+TE+ I TP LV+P+A R ++ P E A + F + GP ++ G Sbjct: 398 YSQEDTELVIVVTPRLVRPIA-RGVTLPLPGGRQE-AADSTFNAWGYYLMGPVGGQQMPG 455 >gi|21673269|ref|NP_661334.1| type II secretion system protein [Chlorobium tepidum TLS] gi|21646357|gb|AAM71676.1| type II secretion system protein [Chlorobium tepidum TLS] Length = 445 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 125/443 (28%), Positives = 201/443 (45%), Gaps = 56/443 (12%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 S+ + + ++ V + V V DP AD ++ SP +YL GK G N+I+ G +G Sbjct: 12 SVPEGESRVYRLAVPAKRVAVGDPAIADFIMISPSELYLSGKKTGATNLIVWGKNGN-FT 70 Query: 111 NLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 +++ R++ ++ LR + + I++ D +VL G V ++ A+ L +TFL Sbjct: 71 TAPLVVSRNVKPIQDLLRAVLPKEHDIQLYSSGDALVLAGSVSNALAAETAIRLVKTFLG 130 Query: 170 QSGRN---------------------------------------QYANSSSKKVMNLLNI 190 + + A+S +NLL I Sbjct: 131 GTVPDVTPEATLTKKSEAATGTSGGTSISGMTGVASAAGMSGAATVASSGIHGFINLLKI 190 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L+V IAEV + ++ +GF + G + + FVS + Sbjct: 191 RDPQQVRLEVRIAEVSKSYMEALGFSW-----TQGVGSTAGSSLMTGFVSNA----TLNL 241 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L + S + A + I+ LAEPT+ A+SGQ F GG+ T + GA Sbjct: 242 LLKNSGNLKVEADSQKNWIKMLAEPTIVAMSGQEGYFLVGGKIYTPTPTG-NGAVDYQER 300 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKADTTVELPSGG 366 YGV L FTPTVL GRI L++ EVSEP + ++P+++V A TTVE+ G Sbjct: 301 TYGVGLRFTPTVLDAGRISLKVAPEVSEPDSQFQSAGSLYNLPAFKVSAASTTVEMNEGQ 360 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +V+ GLLKD + + E +PLL ++P+LGALFR++ + E+ E+ + P LVK Sbjct: 361 NLVIGGLLKDKLTETIEAVPLLGQLPLLGALFRHTSMDSEKVEVIVIVRPTLVKASDT-V 419 Query: 427 LSRPDDHYSVEDDAKAFFFNRVN 449 P D + + F ++ Sbjct: 420 PELPTDRFVPPGPNRLFLEGKLQ 442 >gi|187926427|ref|YP_001892772.1| type II and III secretion system protein [Ralstonia pickettii 12J] gi|241665914|ref|YP_002984273.1| type II and III secretion system protein [Ralstonia pickettii 12D] gi|187728181|gb|ACD29345.1| type II and III secretion system protein [Ralstonia pickettii 12J] gi|240867941|gb|ACS65601.1| type II and III secretion system protein [Ralstonia pickettii 12D] Length = 454 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 100/418 (23%), Positives = 178/418 (42%), Gaps = 38/418 (9%) Query: 26 LPPIKEANAAVINISDVEIG-KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84 + + AA ++ + E G+ + + +++ ++ + + +P AD ++ Sbjct: 11 MGGLALGCAAFVSSAFAETAPTGQTLHLLTGSQREIRLGKPLERIAIGNPEIADALLLKG 70 Query: 85 R----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140 R ++ + K G ANV++ G ++ ++ + V Sbjct: 71 RGTATSVLIIAKKPGAANVMVWTQGG-VATTYNVQVDA---------AAPVPGDPA-VVA 119 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 DT V+ G + L+ S + + V++ ++ V + V Sbjct: 120 QGDTAVVSGQPKD------VYALARARRSAAAASGAEKPKDGNVIDTTSMNVPGTVQVDV 173 Query: 201 TIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSE------GGDFSVKG 249 + E + +LK+ GF + PS FG +S G F++ Sbjct: 174 RVVEFSKTVLKEAGFTFGRTRGGFDFRTFAPSSLSKVTFGSNGLSTESTMPIGSAFNLLV 233 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 L LE R LAEP+L A+SGQSA+F +GG+ V + G T++ Sbjct: 234 SSVSKGLFADLSLLESNGMARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEY 292 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSG 365 +G+ L +PT+LS RI L++ E S+ + +N +P+ R+ADTTVEL G Sbjct: 293 KPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADTTVELGDG 352 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + V+ GL+ + +P L +PI+G F+ +N+EE E+ I TP LVKP+A Sbjct: 353 ESFVIGGLVSRSTLSNVDKVPFLGDVPIIGTFFKRLNYNQEERELVIIVTPHLVKPMA 410 >gi|309778769|ref|ZP_07673542.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA] gi|308922477|gb|EFP68101.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA] Length = 454 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 99/418 (23%), Positives = 178/418 (42%), Gaps = 38/418 (9%) Query: 26 LPPIKEANAAVINISDVEIG-KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84 + + AA ++ + E G+ + + +++ ++ + + +P AD ++ Sbjct: 11 MGGLALGCAAFVSSAFAETAPTGQTLHLLTGSQREIRLGKPLERIAIGNPEIADALLLKG 70 Query: 85 R----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140 R ++ + K G ANV++ G ++ ++ + V Sbjct: 71 RGTATSVLIIAKKPGAANVMVWTQGG-VATTYNVQVDA---------AAPVPGDPA-VVA 119 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 DT V+ G + L+ S + + V++ ++ V + V Sbjct: 120 QGDTAVVSGQPKD------VYALARARRSAAAASGAEKPKDGNVIDTTSMNVPGTVQVDV 173 Query: 201 TIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSE------GGDFSVKG 249 + E + +LK+ GF + PS FG +S G F++ Sbjct: 174 RVVEFSKTVLKEAGFTFGRTRGGFDFRTFAPSSLSKVTFGSNGLSTESTMPIGSAFNLLV 233 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 L LE R LAEP+L A+SGQSA+F +GG+ V + G T++ Sbjct: 234 SSVSKGLFADLSLLESNGMARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEY 292 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSG 365 +G+ L +PT+LS RI L++ E S+ + +N +P+ R+ADTTVEL G Sbjct: 293 KPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADTTVELGDG 352 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + V+ GL+ + +P L +P++G F+ +N+EE E+ I TP LVKP+A Sbjct: 353 ESFVIGGLVSRSTLSNVDKVPFLGDVPVIGTFFKRLNYNQEERELVIIVTPHLVKPMA 410 >gi|307944371|ref|ZP_07659712.1| putative type III secretion component [Roseibium sp. TrichSKD4] gi|307772717|gb|EFO31937.1| putative type III secretion component [Roseibium sp. TrichSKD4] Length = 411 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 99/394 (25%), Positives = 170/394 (43%), Gaps = 18/394 (4%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 I++ I+L+ V V + A+V + + +Y+ G G N++++ +D Sbjct: 19 AAPPINLTKGFGILLRFNEPVASVFIGSNEIAEVQAVNEKAIYVSGLTAGTTNLLVMNYD 78 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + I++ L I + ++ V+ +T ++ G V I D+ E+ Sbjct: 79 NDIIRSHAIVVHPVNNETSYLLENLIPNGDVTVQSSGNTSIIRGNVDNIDDADDIREVKT 138 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 Q +KV++ + QV+LKV I E+ R L ++GF S S S Sbjct: 139 RLEEQ----------GRKVIDKTTTSTPVQVSLKVRIVELYRADLIKLGFDVSSVSSGSV 188 Query: 226 PSKSFAADFGGKFVSEGGD-------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + F+S + G + F+ +L LE+ I+ LAEP LT Sbjct: 189 FKVVTGSGIAQDFMSTLIGSVEGQTRVGISGANNSFNVNAMLDLLEKRGYIQILAEPRLT 248 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 ++G+ A+F SGG+ +V+ G + + G+ + F P +L +I + I +E+ Sbjct: 249 TVTGEKATFRSGGEFAV-SVNQGNGVFTAEYKETGISIDFIPEILPGDKISIDISSEIKF 307 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P+ VR T ++ SG T LAGL + K G P LSKIP+ G L Sbjct: 308 VDPQSVVNSAPALLVRSVQTNAQVASGQTFALAGLYQLTQSSSKSGPPYLSKIPVFGNLL 367 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 + +REE E+ TP+LV + +P D Sbjct: 368 SKTNESREERELIFFITPYLVHSSVPIEKKQPTD 401 >gi|254245567|ref|ZP_04938888.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia PC184] gi|124870343|gb|EAY62059.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia PC184] Length = 443 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 113/447 (25%), Positives = 177/447 (39%), Gaps = 49/447 (10%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVI 100 I + + + +Q V V DP ADV++ ++ L K G NV+ Sbjct: 21 ASASATIELAVGAQRQISAGRTLQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGATNVM 80 Query: 101 LI--GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 L G D + N++++ + + + + RV T VL G +++ Sbjct: 81 LWERGRDEPTIWNVEVV--------DAAAQAVLDGAAPRVNAYGGTAVLQGSAASLEAHS 132 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH- 217 RA + + + V++ + G+ V + V + E R +LKQ+GF Sbjct: 133 RAAAVGKNMSGKGV-----------VIDRSTVPGKSVVQVDVRVVEFSRSVLKQVGFNFF 181 Query: 218 -SITGSSSGPSKSFAADFGGKFVSE-------------GGDFSVKGVLDRFSFETVLHAL 263 G S G F++ L L Sbjct: 182 KQSNGFSFGSFSPGGVQSYSGGSGPGTGGYVPTLGSPVASAFNLVVNAAGRGIFADLSLL 241 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E R LAEPTL A+SGQSASF +GG+ + G+T++ YGV L TPTVL Sbjct: 242 EANNLARVLAEPTLVALSGQSASFLAGGEIPVPS-PQGLGSTAIQWKQYGVGLSLTPTVL 300 Query: 324 SPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 SP RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 301 SPSRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTM 360 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 +PLL +PI+G F+N + + + E+ I TP LV P+A + + Sbjct: 361 SNVSKVPLLGDLPIIGTFFKNLSYQQNDKELLIIVTPHLVAPIAKGAVLPAT-----PGE 415 Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYK 466 V K Y AS + Sbjct: 416 LSEQRDGPVWKSYLGGAASPDAAPGFS 442 >gi|163857691|ref|YP_001631989.1| putative Flp pilus assembly secretin [Bordetella petrii DSM 12804] gi|163261419|emb|CAP43721.1| putative Flp pilus assembly secretin [Bordetella petrii] Length = 464 Score = 253 bits (645), Expect = 7e-65, Method: Composition-based stats. Identities = 122/480 (25%), Positives = 195/480 (40%), Gaps = 46/480 (9%) Query: 7 TFFTMMSIFLFSSNPSVAKL--PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 M L + + A + A + + IS+ + +L +P Sbjct: 4 WMKPRMRASLLCTVLATAGVFYGAPVAGQARPAEPAAAAPAASQDISLAVKGQQLLPLPG 63 Query: 65 DVQDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 + V+DP ADV V P + L GK+ G V + + + + + Sbjct: 64 TPTRIAVADPDVADVKVLPAAAGRPAAVMLIGKSAGTTQVQVWARNSRSPATWTVHVT-- 121 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 ++ L+R V++ V+ G + Q +V + + A + Sbjct: 122 -GPVQAELQRRGQAGGANVDVAGTHAVVSGHAPSALSHQNSVAAAAASVGDKNVVDVATA 180 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S V+ + E R ++KQ+G S+TG++ G F + Sbjct: 181 GSGGVVQVEVKVVEV-----------SRSVMKQVGL--SMTGNAGGWG--FGSRTSPDGF 225 Query: 240 SEGGDFSVKGVL--------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 S G + +GVL D F L L+ R LAEPTL A+SGQSASF +GG Sbjct: 226 STPGTLNPRGVLSDGFNLLFDSNHFGATLRMLQSNGMARVLAEPTLVALSGQSASFLAGG 285 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--------EPVIGV 343 + S G +V +G+ L TPTVLS RI L++ E S + G Sbjct: 286 EIPIPE-SGGLGTQNVVFKPFGIGLTVTPTVLSRDRIALKVAPEASELDYVNGIPILNGE 344 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 A +P+ R R+ADT +EL G + V++GL+ + +P L ++PI+GA FR + Sbjct: 345 TATLIPALRTRRADTMIELGDGESFVISGLVSRQTKASVNKVPFLGELPIIGAFFRGIEY 404 Query: 404 NREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 ++EE E+ I TP LV+P+A L P + D + + GP +V G Sbjct: 405 SQEEHELVIVVTPRLVRPIARGVALPLPGERQERPD---SITNAWGYYLMGPAGGQQVPG 461 >gi|188592032|ref|YP_001796630.1| type II secretion system protein; precursor [Cupriavidus taiwanensis LMG 19424] gi|170938406|emb|CAP63393.1| putative Type II secretion system protein; putative precursor [Cupriavidus taiwanensis LMG 19424] Length = 475 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 98/415 (23%), Positives = 173/415 (41%), Gaps = 42/415 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR---TMYLF 90 A + +++ + L+ V+ V V +P AD ++ R ++ L Sbjct: 38 ALAPRAQAQDAATARQLRLMAGAQKELRSAQPVERVAVGNPAVADALILRTRGAPSVLLV 97 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 K G +V++ G + N + ++ ++ + V + G Sbjct: 98 AKQPGVTDVMVWTRGGAEPQNYSVQVDAIAPDANGA----------QLGYSAAGVTITG- 146 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 Q +++ + V++ + V + V + E+ + +L Sbjct: 147 ----QSPDAYGAARAQAAARAATAGKTDGKPGLVVDRSTVPLSGTVQVDVKVVEISKTVL 202 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---------DRFSFETV-- 259 K++G +S +F+ KF G G + F+ Sbjct: 203 KEVGINF-FRNNSGFAFGTFSPSTLNKFTFTPGSGGAPGSFSADIASPMSNAFNLVAASL 261 Query: 260 -------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + LE R LAEP+L A+SGQSASF +GG+ V + G T++ + Sbjct: 262 THGIFANISLLEANGLARVLAEPSLVALSGQSASFLAGGEIPIP-VPQALGTTTIQFKPF 320 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTI 368 G+ L +PTVLS RI L++ E S+ I +N +P+ R+ADTTVEL G + Sbjct: 321 GIGLTVSPTVLSADRIALKVAPEASDLDPSRGISINGAVVPAIVTRRADTTVELGDGESF 380 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 V+ GL+ + +P+L +P++GA F+N F++E+ E+ I TP LVKP+A Sbjct: 381 VIGGLVSRNTVSNVNKVPVLGDLPVIGAFFKNLNFHQEDRELMIVVTPRLVKPMA 435 >gi|116694140|ref|YP_728351.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16] gi|113528639|emb|CAJ94986.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16] Length = 470 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 99/415 (23%), Positives = 174/415 (41%), Gaps = 42/415 (10%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR---TMYLF 90 A E +++ + ++ V+ V V +P AD +V R ++ L Sbjct: 33 ALAPRAQAQEAVNARQLRLLAGAQKEIRSAQPVERVAVGNPAVADALVLRTRGAPSVLLV 92 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 K G +V++ G + L ++ ++ + + + T+ Sbjct: 93 AKQPGVTDVMVWTRGGAEPLTYNVQVDA--------IAPDADGAKLGYSAAGATI----- 139 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 T Q +++ + V++ + V + V + E+ + +L Sbjct: 140 --TGQSPDAYAAARAQAAARAATTGKTDGKPGLVVDRSTVPLSGTVQVDVKVVEISKTVL 197 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---------DRFSFETV-- 259 K++G +S +F+ KF G G + F+ Sbjct: 198 KEVGINF-FRNNSGFAFGTFSPSTLNKFTFTPGSGGAPGSFSADIASPMSNAFNLVAASL 256 Query: 260 -------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + LE R LAEP+L A+SGQSASF +GG+ V + G T++ + Sbjct: 257 THGIFANISLLEANGLARVLAEPSLVALSGQSASFLAGGEIPIP-VPQALGTTTIQFKPF 315 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTI 368 G+ L +PTVLS RI L++ E S+ I +N +P+ R+ADTTVEL G + Sbjct: 316 GIGLTVSPTVLSADRIALKVAPEASDLDPSRGISINGAVVPAIVTRRADTTVELGDGESF 375 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 V+ GL+ + +P+L +P++GA F+N F++E+ E+ I TP LVKP+A Sbjct: 376 VIGGLVSRNTVSNVNKVPVLGDLPVIGAFFKNLNFHQEDRELMIVVTPRLVKPLA 430 >gi|115351456|ref|YP_773295.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] gi|115281444|gb|ABI86961.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] Length = 444 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 109/443 (24%), Positives = 184/443 (41%), Gaps = 41/443 (9%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP---RTMYLFGKNVGQANV 99 G I + + + +Q + V DP DV+V ++ L K G NV Sbjct: 23 AAGTNASIDLAVGSQRQVAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPGSTNV 82 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 +L + ++ + ++ + + S +V+ VL G ++ +R Sbjct: 83 LLWERGRDEPTVWNVNV------VDAAAQAALDGSAPKVKGYGGAAVLSGSSASLDAHER 136 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217 AV + + + G V++ + V + V + E R +LK+ G Sbjct: 137 AVAVGKRMGGKDGT----------VIDASTVGNRSVVQVDVRVVEFSRSVLKEAGLNFFK 186 Query: 218 -----SITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERAT 267 + S G +S F + GG F++ + LE Sbjct: 187 QSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNISILEANN 246 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 R LA+PTL A+SGQSASF +GG+ V + G+T++ YGV L TPTVLS R Sbjct: 247 LARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIDWKQYGVGLTLTPTVLSQHR 305 Query: 328 IGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 I L++ E S+ + +N+ +P+ R+ADTTVEL G + V+ GL+ + Sbjct: 306 IALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRETMSNIS 365 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +P+L +PI+GA F++ + + + E+ I TP LV P+A + P + + Sbjct: 366 KVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVAPIA-KGAPLP----ATPGELSEQ 420 Query: 444 FFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 421 RDGPVWRSYLGGIASPDAAPGFS 443 >gi|330816715|ref|YP_004360420.1| Type II and III secretion system protein [Burkholderia gladioli BSR3] gi|327369108|gb|AEA60464.1| Type II and III secretion system protein [Burkholderia gladioli BSR3] Length = 477 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 124/490 (25%), Positives = 202/490 (41%), Gaps = 63/490 (12%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 ++++ + S +++ A V D+ +G ++I+ G N +Q V Sbjct: 5 LIALAIAVSALALSSWASAAGPEAGV----DLAVGAQRQIASGRN----------LQRVA 50 Query: 71 VSDPTKADVVVH-SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 V DP AD+++ + L GK+ G NV+L + + + A Sbjct: 51 VGDPAVADILIIKGGGGVMLIGKSAGTTNVMLWERGRSEPTVYTVHVTSGAA------HA 104 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA------------ 177 + D+ RV+ DT V+ G T++ QRAV+++ + Q + Sbjct: 105 LLNDATPRVDTYGDTTVISGSANTLEAHQRAVDVANAAAAARAAAQQSSSAGGGQGKGQA 164 Query: 178 -------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGS 222 +S+ V++ I+G + V + V + E R +KQ G S G Sbjct: 165 VGRGGGNGGGGGGDSAGPNVVDASTISGRNVVQVDVRVVEFSRSAIKQAGLNLFKSNNGF 224 Query: 223 SSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFSFETVLHALERATAIRTL 272 S G + S G F++ L LE+ R L Sbjct: 225 SFGSFAPSSLQSSSYNPSAGLTVTAVSPITSAFNLVVGSTSRGIAGNLSVLEQNNLARIL 284 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A+PTL A+SGQSASF +GG+ V S G S+ YG+ L TPTVL P RI L++ Sbjct: 285 AQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIEYKPYGIGLTVTPTVLGPNRIALKV 343 Query: 333 QTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 E S+ I +N+ +P+ R+ADTTVEL G + V+ GL+ + +P L Sbjct: 344 APEASQLDFLNAITINSITVPALTTRRADTTVELGDGESYVIGGLVDRETTSNVSKVPFL 403 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 +PI+GA F++ + + + E+ TP LV P+A E + + + Sbjct: 404 GDLPIIGAFFKSLNYQQNDKELVFVVTPHLVSPIAAGASLPSTPGEQSEQRDGPVWRSFL 463 Query: 449 NKIYGPKEAS 458 I P A Sbjct: 464 GGILVPDAAP 473 >gi|171317113|ref|ZP_02906316.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] gi|171097747|gb|EDT42574.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] Length = 443 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 112/445 (25%), Positives = 178/445 (40%), Gaps = 45/445 (10%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVI 100 I + + + +Q V V DP ADV++ ++ L K G NV+ Sbjct: 21 ASASGTIELAVGAQRQISAGRTLQRVAVGDPAVADVLIMKGSRSGSVLLTAKAPGATNVM 80 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L + + + ++ + + S RV T VL G ++ RA Sbjct: 81 LWARGRDEPTVWSVEV------VDAAAQAVLDGSTPRVNAYGGTAVLQGTAASLDAHARA 134 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217 + + S+ V++ + G++ V + V + E R +LKQ+GF Sbjct: 135 SAVGKNM-----------SAKGNVIDRSTVVGKNVVQVDVRVVEFSRSVLKQVGFNFFKQ 183 Query: 218 ----SITGSSSGPSKSFAADFGGKFV--------SEGGDFSVKGVLDRFSFETVLHALER 265 S S G +S++ G F++ L LE Sbjct: 184 SNGFSFGSFSPGGVQSYSGGAGPGTGGYVPTLGSPVASAFNLVVNAAGRGIFADLSLLEA 243 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R LAEPTL A+SGQSASF +GG+ G+T++ YGV L TPTVL+P Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVP-APQGLGSTAIQWKQYGVGLTLTPTVLNP 302 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L++ E S+ + ++ +P R+ADTTVEL G + V+ GL+ Sbjct: 303 NRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL +PI+G F+N + + + E+ I TP LV P+A + + Sbjct: 363 VSKVPLLGDLPIIGTFFKNLSYQQNDKELLIIVTPHLVAPIAKGAVLPAT-----PGELS 417 Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 418 EQRDGPVWRSYLGGVASPDAAPGFS 442 >gi|170701752|ref|ZP_02892688.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] gi|170133335|gb|EDT01727.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] Length = 444 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 108/443 (24%), Positives = 184/443 (41%), Gaps = 41/443 (9%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP---RTMYLFGKNVGQANV 99 G I + + + +Q + V DP DV+V ++ L K G NV Sbjct: 23 AAGTNASIDLAVGSQRQIAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPGSTNV 82 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 +L + ++ + ++ + + + +V+ VL G ++ +R Sbjct: 83 LLWERGRDEPTVWNVNV------VDAAAQAALDGTGPKVKAYGGAAVLSGSSASLDAHER 136 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217 AV + + + G V++ + V + V + E R +LK+ G Sbjct: 137 AVAVGKRMGGKDGT----------VIDASTVGNRSVVQVDVRVVEFSRSVLKEAGLNFFK 186 Query: 218 -----SITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERAT 267 + S G +S F + GG F++ + LE Sbjct: 187 QSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNISILEANN 246 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 R LA+PTL A+SGQSASF +GG+ V + G+T++ YGV L TPTVLS R Sbjct: 247 LARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIDWKQYGVGLTLTPTVLSQRR 305 Query: 328 IGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 I L++ E S+ + +N+ +P+ R+ADTTVEL G + V+ GL+ + Sbjct: 306 IALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRETMSNIS 365 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +P+L +PI+GA F++ + + + E+ I TP LV P+A + P + + Sbjct: 366 KVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVAPIA-KGAPLP----ATPGELSEQ 420 Query: 444 FFNRVNKIYGPKEASEVEGQNYK 466 V + Y AS + Sbjct: 421 RDGPVWRSYLGGIASPDAAPGFS 443 >gi|261856884|ref|YP_003264167.1| type II and III secretion system protein [Halothiobacillus neapolitanus c2] gi|261837353|gb|ACX97120.1| type II and III secretion system protein [Halothiobacillus neapolitanus c2] Length = 443 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 103/451 (22%), Positives = 177/451 (39%), Gaps = 51/451 (11%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 +++++LFS A P + +A +++ + ++ P + V Sbjct: 15 LLALWLFSVPVFSADAPALPDA-----------------VTMYAGQALVRSAPGSLLRVA 57 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V + +V V R M + G ++ L DG + ++ + + +R Sbjct: 58 VGNGKLVEVRVLGRRQMVIIANQAGDTSLQLWMRDGSRRSIDLHIVSGNTDQVAELVRTL 117 Query: 131 IADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + S + V V VVL G+ T +D + + + + Q Sbjct: 118 LKASKAVSVNTVGGNVVLSGVNLTQEDVAQIAAIKKVYPQVLDFTQANA----------- 166 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 + + V +KV I E + L QIG + GP + A DF + S G Sbjct: 167 VQMKPMVMMKVRIMEFDKSALHQIGIKW--DSVIDGPGGALAHDFASNSLYRMTPSSFGG 224 Query: 250 VLDR-------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + S + ++ + + LA P L A SG +A F G Sbjct: 225 IGANGAVNLPLSLSGTPAFFGLVTSITSKINLMMQTGNAWELATPQLAARSGGTADFLVG 284 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G+ ++ G TSV YG+ LH P V S G I I+ E+S V P Sbjct: 285 GEVPIP-IAQGLGQTSVEYKPYGIKLHIEPVVSSTGDISTTIKAEISHIDPSVTVQGYPG 343 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + RKA T V + G TIV++GL+ + + +P L +IP+LG LFR+ F + +++ Sbjct: 344 FLTRKASTEVNVHEGQTIVISGLVDSSASKTIDKVPGLGQIPVLGELFRSRDFKSKRSDL 403 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 I TP+LV P A + + + D+ + Sbjct: 404 VIFVTPYLVTPDAPLNKALISKSNKLADEFR 434 >gi|33593025|ref|NP_880669.1| putative type II secretion system protein [Bordetella pertussis Tohama I] gi|33563400|emb|CAE42276.1| putative type II secretion system protein [Bordetella pertussis Tohama I] gi|332382437|gb|AEE67284.1| putative type II secretion system protein [Bordetella pertussis CS] Length = 449 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 117/429 (27%), Positives = 189/429 (44%), Gaps = 36/429 (8%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS-----PRTMYLFGKNVGQANVILI 102 +++ + + L++ V ++DP ADV V + P + L G+ G + + Sbjct: 40 RELLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVW 99 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 + + + + ++ L R +V+M D+ V+ GM + Sbjct: 100 SRGSRDPQVWTVRV---LPQVQAALARRGVGGGAQVDMAGDSGVVTGMAPSA-------- 148 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 E + A + KV+++ I V ++V + E+ R ++K +G Sbjct: 149 --EAHRGAAEAAAAAAGGNDKVVDMSQINTSGVVQVEVKVVELARSVMKDVGINFRADSG 206 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S D GG F + R F L L+ R LAEPTL A+SG Sbjct: 207 PWSGGVSLLPDLA-----SGGMFGMLSYTSR-DFSASLALLQNNGMARVLAEPTLLAMSG 260 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335 QSASF +GG+ VS+ G TSV +G+ L TPTV+S RI L++ E Sbjct: 261 QSASFLAGGEIPIP-VSAGLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYA 319 Query: 336 --VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 +S +P+ R RKADT VEL G T V++GL+ + +PLL +PI Sbjct: 320 NGISSIDSNNRITVIPALRTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPI 379 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 +GA FRN ++++E+ E+ I TP LV+P+A R ++ P E + A F + G Sbjct: 380 IGAFFRNVQYSQEDRELVIVVTPRLVRPIA-RGVTLPLPGARQEV-SDAGFNAWGYYLLG 437 Query: 454 PKEASEVEG 462 P ++ G Sbjct: 438 PMSGQQMPG 446 >gi|33596969|ref|NP_884612.1| putative type II secretion system protein [Bordetella parapertussis 12822] gi|33600811|ref|NP_888371.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] gi|33566420|emb|CAE37673.1| putative type II secretion system protein [Bordetella parapertussis] gi|33568411|emb|CAE32323.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] Length = 448 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 116/429 (27%), Positives = 189/429 (44%), Gaps = 36/429 (8%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILI 102 +++ + + L++ V ++DP ADV V +P + L G+ G + + Sbjct: 39 RELLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVW 98 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 + + + + ++ L R +V+M D+ V+ GM + + Sbjct: 99 SRGSRDPQVWTVRV---LPQVQAALARRGVGGGAQVDMAGDSGVVTGMAPSAE------- 148 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + A + KV+++ I V ++V + E+ R ++K +G Sbjct: 149 ---AHRGAAEAAAAAAGGNDKVVDMSQINTSGVVQVEVKVVELARSVMKDVGINFRADSG 205 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S D GG F + R F L L+ R LAEPTL A+SG Sbjct: 206 PWSGGVSLLPDLA-----SGGMFGMLSYTSR-DFSASLALLQNNGMARVLAEPTLLAMSG 259 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335 QSASF +GG+ VS+ G TSV +G+ L TPTV+S RI L++ E Sbjct: 260 QSASFLAGGEIPIP-VSAGLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYA 318 Query: 336 --VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 +S +P+ R RKADT VEL G T V++GL+ + +PLL +PI Sbjct: 319 NGISSIDSNNRITVIPALRTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPI 378 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 +GA FRN ++++E+ E+ I TP LV+P+A R ++ P E + A F + G Sbjct: 379 IGAFFRNVQYSQEDRELVIVVTPRLVRPIA-RGVTLPLPGARQEV-SDAGFNAWGYYLLG 436 Query: 454 PKEASEVEG 462 P ++ G Sbjct: 437 PMSGQQMPG 445 >gi|323525746|ref|YP_004227899.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] gi|323382748|gb|ADX54839.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] Length = 474 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 115/471 (24%), Positives = 189/471 (40%), Gaps = 51/471 (10%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPRT--MY 88 + ++ + G + + I + L ++ V + DP+ ADV V+ RT + Sbjct: 7 GASMAVSPAGFAAGGAQALDIVVGSQQSLASGHTLRRVAIGDPSVADVLVIRGDRTGGVL 66 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 L GK+ G NV+L L+ + + A + + V+++ DT ++ Sbjct: 67 LIGKSPGSTNVMLWEQGKDAPLSYVVNVSSPAA------KSLLGPDTPSVKVLGDTALIS 120 Query: 149 GMVRTIQDSQRAVELSETFLSQSGR---------------------------NQYANSSS 181 G T++ QRAV + Q S Sbjct: 121 GSAPTMEAHQRAVAAAGIEAHQRATLGSAAKGGTGGKAGVASALAGADAANGGASGGESG 180 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-----HSITGSSSGPSKSFAADFGG 236 ++ + +A V + V + E R +LKQ+G + T S PS +A +G Sbjct: 181 TQIYDSSTVATRSVVQVDVRVVEFSRTVLKQVGLNILKQNNGFTFGSFAPSALSSATYGA 240 Query: 237 KFVSEG-----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F++ L +E R LAEPTL A+SGQSASF +GG Sbjct: 241 TPTFNSVAPISSAFNLVFNSATHGLFADLSLMESNNLARILAEPTLVALSGQSASFLAGG 300 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD 347 + + G TS+ YGV L TPTVLSP RI L++ E S+ + ++ Sbjct: 301 EIPVP-IPQGLGTTSIEYKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVS 359 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P+ R+ DTTVEL G + V+ GL+ + +PLL +P++GA F+ + + + Sbjct: 360 VPAITTRRTDTTVELGDGESFVIGGLIDRETISNVAKVPLLGDLPVIGAFFKQLNYQQND 419 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 E+ I TP LV P+A E + + + + A Sbjct: 420 KELVIIVTPHLVSPLAKGATLPATPGEQSEQRNAPVWRSLLGGVAARDAAP 470 >gi|91775995|ref|YP_545751.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91709982|gb|ABE49910.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 453 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 112/409 (27%), Positives = 195/409 (47%), Gaps = 39/409 (9%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + ++I + + + + + V +Q V V++P V + SP+TM + K VG + L Sbjct: 26 QAEEIMVSMGQQRLYEHTVTLQRVAVANPEVLAVTLTSPKTMMIVPKAVGATEISLWDSQ 85 Query: 106 GKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 Q + + + +A LE + + ++VE + + L G R++++ RA+E Sbjct: 86 SVQPSRVLQVSVTPSLA-LEGQGLKAADAAGLQVEAAGNGLALSGEARSLEEHARALESL 144 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----QHSIT 220 + + +++ + + V + + + EV R + GF +S + Sbjct: 145 QK-------------ERQGALDVTSSEFDSHVQIDIKVVEVSRQNAMRFGFLMGKNNSAS 191 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKG----VLDRFS---------FETVLHALERAT 267 G S + G + S G DFS VL+ F+ L LE Sbjct: 192 RDGFGIVASPNSFSGVEAGSGGFDFSSTSGFLPVLNAFNVVFGNHGSGLLGTLSILEGNG 251 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 TLAEP+L+AISGQ+A+F +GG+ T S A ++ +YGV L TPT+LS Sbjct: 252 FAYTLAEPSLSAISGQTATFLAGGEFPVPIRTGGGSDSAITIRYKEYGVRLMLTPTILSG 311 Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 RI L++ EVSE + +P +VR+ +T+V L +G + V++G++ + Sbjct: 312 ERIFLKVAPEVSELDFANAVQTGGVAVPGLKVRRTETSVSLGNGESFVISGMVSRNTINN 371 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 + +P L IPI+GA F + RF+RE+ E+ + TP LV+P+A R+ P Sbjct: 372 IDKVPGLGNIPIIGAFFSSKRFDREDKELLMVVTPRLVRPIA-RNAELP 419 >gi|167836794|ref|ZP_02463677.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 423 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 118/454 (25%), Positives = 187/454 (41%), Gaps = 50/454 (11%) Query: 31 EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MY 88 A AA + ++ G ++I++G VQ V + DP ADV+V + Sbjct: 1 AAQAAEMGAIELTTGAQRQIAVGRG----------VQRVAIGDPNVADVLVIKGGRGGVL 50 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 L K G ++++ + + + A R + V T V+ Sbjct: 51 LVAKAAGSTSLMVWERGRDEPAVYTVDVVSGAA------RALLDGGAPGVRAYDGTAVVS 104 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G T+ RA+ + + + G A+ + G++ V + V + E R Sbjct: 105 GSAATLDAHARALAVGKGMAGKGGGVVDAS----------TVGGKNVVQVDVRVVEFSRS 154 Query: 209 ILKQIGFQH-----SITGSSSGPSKSFAADFGGKF-------VSEGGDFSVKGVLDRFSF 256 +LKQ G T S P+ + GG + F++ Sbjct: 155 VLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGL 214 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 L LE R LA+PTL A+SGQSASF +GG+ V S G S+ YGV L Sbjct: 215 FADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGL 273 Query: 317 HFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 TPTVLSP RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ G Sbjct: 274 TLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGG 333 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L+ + + +P L +PI+G F++ + + + E+ I TP LV P+A ++ S P Sbjct: 334 LIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIA-KNASLP-- 390 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + V + Y S G + Sbjct: 391 --ATPGELSEQRDGPVWRSYLGGALSPDAGPGFS 422 >gi|198284413|ref|YP_002220734.1| type II and III secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666419|ref|YP_002427081.1| bacterial type II/III secretion system protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248934|gb|ACH84527.1| type II and III secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518632|gb|ACK79218.1| bacterial type II/III secretion system protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 478 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 121/493 (24%), Positives = 202/493 (40%), Gaps = 44/493 (8%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANA-AVINISDVEIGKGKKISIGLNKVIILQV 62 +++ + +++ ++ S A A + + + G + ++I + L Sbjct: 1 MRKWMMSSLAVATLAALGSQGAWAEGPAAEGGAHPSWAAHQSGGYRALNIPVGTQQTLSF 60 Query: 63 PVDVQDVLVSDPTKADVVVH---SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V V +P A V R + G + G ++++ K + + Sbjct: 61 TEPAYRVAVGNPKTASVAPLPRSGGRQFLITGLSTGTTSLLVWNLGHKTPKVWQLQVSVP 120 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + A V D V L G V + A+E + ++G Sbjct: 121 VPG---APLAAPAPGMPEVRAQGDAVTLSGAVADQVKHEAALEAAALAAGKTG------- 170 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSS----GPSKSFAADF 234 KV++ I +D+V + V + E + LK +G S TG S GPS +A++ Sbjct: 171 ---KVIDQSVIPVDDEVQVGVKVVEFSKAQLKNVGINIFSSTGGFSLGTFGPSTLTSANY 227 Query: 235 GGKFVSEG-------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S G F++ G + + L LE +R LAEPTL A++ Sbjct: 228 PVSLASGGPGALAITGVAPFTQAFNLVGGVGNSGLSSYLSLLEGNNILRVLAEPTLVAMN 287 Query: 282 GQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS- 337 GQ ASF +GG+ SS T ++ YGV L TPT+LS RI L + VS Sbjct: 288 GQQASFLAGGEIPIPVPQSSGVGTPTITIQYKKYGVQLDLTPTILSAHRIALHVAPSVSS 347 Query: 338 ---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 I +N +P+ VR+ADTTV L +G ++V+ GL+ +QQ +P+L +PIL Sbjct: 348 LDYTNAITLNGYSVPALLVRQADTTVTLGNGESLVIGGLVDRQMQQNISKVPILGDLPIL 407 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 GA FR+ ++++++ E+ I TP LV+P+A P + F + + G Sbjct: 408 GAFFRSIQYSKQDMELAIIVTPRLVRPIAAGAKLPPLPGAAFAHSR--FNLGKAVLLPGS 465 Query: 455 KEASEVEGQNYKG 467 G Y Sbjct: 466 DYNQPDNGPGYSQ 478 >gi|152989020|ref|YP_001350207.1| putative type II secretion system protein [Pseudomonas aeruginosa PA7] gi|150964178|gb|ABR86203.1| probable type II secretion system protein [Pseudomonas aeruginosa PA7] Length = 408 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 96/427 (22%), Positives = 175/427 (40%), Gaps = 77/427 (18%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + ++S+ + L++ V ++ + + DP ADV + ++ + GK G ++++ Sbjct: 28 LAQAPQVSVAQGQQNDLRLAVPIKRLAIGDPQIADVQLLDRSSLLVTGKEQGSTSLLIWT 87 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + L + +E G V T Sbjct: 88 ACSAEPLRSQVAVEG-----------------------------RGSVDTAAAPALGAGG 118 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ---IGFQHSIT 220 ++ +QV + EV R LKQ + Sbjct: 119 ADEL-------------------------PNQVQTDIRFVEVSRSKLKQASTSFVRRGGN 153 Query: 221 GSSSGPSKSF--------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 G S + GG F + F++ + + + ++ALE + TL Sbjct: 154 LWVLGAPGSLGDIKVNADGSGLGGTFGAGASGFNL--IFGGGKWLSFMNALEGSGFAYTL 211 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++ Sbjct: 212 ARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKV 271 Query: 333 QTEVSEP--VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 EVSE G+ +G +P+ RVR+ DT+V L G + V++GL + + P L Sbjct: 272 APEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWL 331 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP-----DDHYSVEDDAKAF 443 IPILGA FR+++ ++++ E+ + TP LV+P+A D P + ++ + Sbjct: 332 GDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAA-DAQLPGLPGEGLRHYDPGFSRLY 390 Query: 444 FFNRVNK 450 F R Sbjct: 391 FLERGEY 397 >gi|327538064|gb|EGF24754.1| bacterial type II/III secretion system protein [Rhodopirellula baltica WH47] Length = 758 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 119/506 (23%), Positives = 194/506 (38%), Gaps = 65/506 (12%) Query: 18 SSNPSVAKLPPIKEAN-AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 S P+ LPP +A + EI +S+ L + IL++ + V D Sbjct: 163 SGLPAELILPPPSDAAKQRASRFVESEIDPEIPLSLVLGRPKILRLADTPTRIYVPDEDT 222 Query: 77 ADVVVH---SPRTMYLFGKNVGQANVILIGHD-----GKQMLNLDILIERD------IAH 122 + S R + + G G ++L D G+ +++ + + D + Sbjct: 223 IRTEIIDQESGRELAVTGVQPGTTTLMLWFKDSGAPSGQSVVSYLVRVYEDPILAKPVGD 282 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS-QSGRNQYANS-- 179 LE L +S + ++ ++D +++ G + + +++ ++G + AN Sbjct: 283 LETELNEKFPNSFVELDEIADRLIVRGQAPDAIEMSQILQILTGARGVRAGLTRPANPVT 342 Query: 180 --------------------------------SSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 S ++N + I GE QV LKVT+AEV R Sbjct: 343 VAAAYDFVGAVDPLTSEEAAAERRRNLDPIALSQAGIINQMKIVGEQQVMLKVTVAEVNR 402 Query: 208 DILKQIGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + IG + + +S + G + + LD + AL R Sbjct: 403 SAARSIGLNFGVDNDNGLTVFQSLTGNLANTQNQSGAN--ILASLDMGQVRLAIEALRRL 460 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVL 323 RTLAEP L A++GQ A F +GGQ +SS + V+ +GV L FTP + Sbjct: 461 NLSRTLAEPNLVAMNGQPADFQAGGQFPIPIISSGGVGNNLQGVSFVPFGVQLQFTPFIQ 520 Query: 324 SPGRIGLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSGGTIVLAGLLK 375 I L++ EVS + + R TTV+L SG TI +AGLL+ Sbjct: 521 DRDVIRLQMNAEVSTRDESLGTSIGGGGGGTQVSGLNSRNFSTTVQLRSGQTIAVAGLLQ 580 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHY 434 + + P +PI+GA +R + E E+ I TP LV PV + P Sbjct: 581 TNYGASSDRTPFWGDLPIIGATGGVNRSSSGEQELVILVTPHLVAPVDACETPALPGSDV 640 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEV 460 D + F NR+ S V Sbjct: 641 YEPSDIEFFIANRLESRRSKDHRSSV 666 >gi|238027562|ref|YP_002911793.1| type II and III secretion system protein [Burkholderia glumae BGR1] gi|237876756|gb|ACR29089.1| Type II and III secretion system protein [Burkholderia glumae BGR1] Length = 476 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 116/451 (25%), Positives = 192/451 (42%), Gaps = 59/451 (13%) Query: 16 LFSSNPSVAKLPPIKEANAAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L + +++ + ANAA ++ D+ +G ++I+ G + +Q V + DP Sbjct: 5 LIALAMAMSAVMASAVANAAGLDAGVDLAVGAQRQIATGRS----------LQRVAIGDP 54 Query: 75 TKADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 ADV+V + L GK+ G NV+L + + + A + + Sbjct: 55 AVADVLVVKGNGGGVLLIGKSAGTTNVMLWERGRSEPDVYPVHVTSGAA------KALLG 108 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS----------- 181 RV+ DT V+ G T++ QRAV+++ + Q + Sbjct: 109 PDTPRVDTYGDTTVIAGSATTLEAHQRAVDVANAAAAARAAAQAGGGGAAAAAGVGGKTA 168 Query: 182 ------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPS 227 V++ I+G + V + V + E R +KQ G S G + G Sbjct: 169 GAGGMGGAGGAAPSVVDASTISGRNVVQVDVRVVEFSRSAVKQAGLNFFKSSNGFAFGSF 228 Query: 228 KSFAADFGGKFVSE----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + G + F++ + L LE+ R LA+PTL Sbjct: 229 APSSLSSLGSSATSGLAVTAAQPIASAFNLVVGSASRGISSNLSILEQNNLARILAQPTL 288 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A+SGQSA+F +GG+ V + G S+ YG+ L PTVL P RI L++ E S Sbjct: 289 VALSGQSANFLAGGEIPVP-VPQALGTVSIEWKPYGIGLTVAPTVLGPNRIALKVAPEAS 347 Query: 338 E----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + I +N +P+ R+ADTTVEL G + V+ GL+ + +P L +PI Sbjct: 348 QLDFVNAITINGVTVPALTTRRADTTVELGDGESYVIGGLVDRETTSNLSKVPFLGDLPI 407 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM 424 +GA F++ + + + E+ I TP LV P+A Sbjct: 408 IGAFFKSLSYQQNDKELVIIVTPHLVSPIAA 438 >gi|311107631|ref|YP_003980484.1| type II and III secretion system family protein 2 [Achromobacter xylosoxidans A8] gi|310762320|gb|ADP17769.1| bacterial type II and III secretion system family protein 2 [Achromobacter xylosoxidans A8] Length = 453 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 116/477 (24%), Positives = 198/477 (41%), Gaps = 42/477 (8%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M+ QRT + S + L + A A + +++ + ++L Sbjct: 1 MKKHQRTTMICLL-----SAAAAMTLGGLSLAQTAAPAAGANAPVRDISMAVKGQQSLVL 55 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 + + DP ADV V ++ L+GK G + + + ++ Sbjct: 56 DGGAPA-RIAIGDPDVADVKVLPATGKRAASVLLYGKKPGTTQLQIWTGNNAAPQIWNVR 114 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + ++ L V++ V+ G + + ++ + + Sbjct: 115 VG---GSVQGALASRGLGGGANVDIADGHAVVSGHAESQLGQIASATMAASAVGGE---- 167 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSFAADF 234 K V+++ V ++V + EV R ++K G + G SG S + A Sbjct: 168 ------KNVVDMSTAGTGGVVQVEVKVVEVSRSVMKAAGISFTASNGPWSGGSSTMPASL 221 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 GG S F D +F L L+ R LAEPTL A++GQSASF +GG+ Sbjct: 222 GGALASGFSLF-----YDSNNFSARLRLLQTNGMARVLAEPTLVALTGQSASFLAGGELP 276 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNA 345 G +VT +G+ L TPTVLS RI L++ E SE + Sbjct: 277 IPQA-GGLGTVNVTFKPFGIGLTVTPTVLSRDRISLKVAPEASELDYTNGIAINTSADTS 335 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ R R+ADTTVEL G + V++GL+ + + +P+L +PI+G+ FR+ +++ Sbjct: 336 TIIPALRTRRADTTVELGDGESFVISGLVSRQTKAMVNKVPMLGDLPIIGSFFRSVDYSQ 395 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 E+TE+ I TP LV+P+A R ++ P E F + GP ++ G Sbjct: 396 EDTELVIVVTPRLVRPIA-RGVALPLPGAKQEQT-DTAFNAWGYYLTGPMGGQQMPG 450 >gi|32477871|ref|NP_870865.1| type II secretion system protein [Rhodopirellula baltica SH 1] gi|32448428|emb|CAD77943.1| probable type II secretion system protein [Rhodopirellula baltica SH 1] Length = 704 Score = 246 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 119/506 (23%), Positives = 194/506 (38%), Gaps = 65/506 (12%) Query: 18 SSNPSVAKLPPIKEAN-AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 S P+ LPP +A + EI +S+ L + IL++ + V D Sbjct: 109 SGLPAELILPPPSDAAKQRASRFVESEIDPEIPLSLVLGRPKILRLADTPTRIYVPDEDT 168 Query: 77 ADVVVH---SPRTMYLFGKNVGQANVILIGHD-----GKQMLNLDILIERD------IAH 122 + S R + + G G ++L D G+ +++ + + D + Sbjct: 169 IRTEIIDQESGRELAVTGVQPGTTTLMLWFKDSGAPSGQSVVSYLVRVYEDPILAKPVGD 228 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS-QSGRNQYANS-- 179 LE L +S + ++ ++D +++ G + + +++ ++G + AN Sbjct: 229 LETELNEKFPNSFVELDEIADRLIVRGQAPDAIEMSQILQILTGARGVRAGLTRPANPVT 288 Query: 180 --------------------------------SSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 S ++N + I GE QV LKVT+AEV R Sbjct: 289 VAAAYDFVGAVDPLTSEEAAAERRRNLDPIALSQAGIINQMKIVGEQQVMLKVTVAEVNR 348 Query: 208 DILKQIGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + IG + + +S + G + + LD + AL R Sbjct: 349 SAARSIGLNFGVDNDNGLTVFQSLTGNLASTQSQSGAN--ILASLDMGQVRLAIEALRRL 406 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVL 323 RTLAEP L A++GQ A F +GGQ +SS + V+ +GV L FTP + Sbjct: 407 NLSRTLAEPNLVAMNGQPADFQAGGQFPIPIISSGGVGNNLQGVSFVPFGVQLQFTPFIQ 466 Query: 324 SPGRIGLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSGGTIVLAGLLK 375 I L++ EVS + + R TTV+L SG TI +AGLL+ Sbjct: 467 DRDVIRLQMNAEVSTRDESLGTSIGGGGGGTQVSGLNSRNFSTTVQLRSGQTIAVAGLLQ 526 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHY 434 + + P +PI+GA +R + E E+ I TP LV PV + P Sbjct: 527 TNYGASSDRTPFWGDLPIIGATGGVNRSSSGEQELVILVTPHLVAPVDACETPALPGSDV 586 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEV 460 D + F NR+ S V Sbjct: 587 YEPSDIEFFIANRLESRRSKDHRSSV 612 >gi|299069498|emb|CBJ40767.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum CMR15] Length = 467 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 94/409 (22%), Positives = 174/409 (42%), Gaps = 37/409 (9%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP----RTMYL 89 A + G+ + + +++ ++ + + +P AD ++ ++ + Sbjct: 33 ALAPAAHAQGMPAGQVLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLI 92 Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149 K G AN+++ G + ++ ++ + D ++ T VL G Sbjct: 93 IAKKPGAANILVWTQGGTAL-TYNVQVDAEPRG------AGSPDLAVQ----GSTAVLTG 141 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 V+ + RA + + +++ +A V + V + E + + Sbjct: 142 QVKDVYSLARARKSAAVAGGAE------PPKGGNMIDNTTLAVPGTVQVDVRVVEFSKTV 195 Query: 210 LKQIGF-----QHSITGSSSGPSK------SFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 LK+ GF + T S PS + + G F++ Sbjct: 196 LKEAGFIFTRTRGGFTFGSFSPSTLTQYTVTPTSLTTQSTTPIGTAFNLLISSFSKGIFA 255 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 L +E R LAEP+L A+SGQSA+F +GG+ V + G T++ +G+ L Sbjct: 256 DLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFGIGLTV 314 Query: 319 TPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +PT+LS RI L++ E S+ + +N +P+ R+ADTTVEL G + V+ GL+ Sbjct: 315 SPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADTTVELGDGESFVIGGLV 374 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + +P L +PI+G F+ +N+EE E+ I TP LV+P+A Sbjct: 375 SRTTLSNVDKVPFLGDVPIIGTFFKRLDYNQEERELVIIVTPRLVRPMA 423 >gi|300697742|ref|YP_003748403.1| pilus assembly protein (cpaC) [Ralstonia solanacearum CFBP2957] gi|299074466|emb|CBJ54016.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum CFBP2957] Length = 462 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 94/406 (23%), Positives = 174/406 (42%), Gaps = 37/406 (9%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMYLFGK 92 + + +G + + +++ ++ + + +P AD ++ R ++ + K Sbjct: 31 PGVHAQSMPEGPVVHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLLIVAK 90 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G A++++ G + ++ ++ + D ++ T VL G VR Sbjct: 91 KPGAASIMVWTQGGTAI-TYNVQVDAEARG------AGSPDLAVQ----GGTAVLTGQVR 139 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 L+ + + +++ +A V + V + E + +LK+ Sbjct: 140 D------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVPGTVQVDVRVVEFSKTVLKE 193 Query: 213 IGF-----QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFETVLH 261 GF + T S PS +S +V + L Sbjct: 194 AGFIFTRTRGGFTFGSFSPSSLTQYTVTPSSLSTQSTTAVSSAFNLLISSFSKGIFADLS 253 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 +E R LAEP+L A+SGQSA+F +GG+ V + G T++ +G+ L +PT Sbjct: 254 LIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFGIGLTVSPT 312 Query: 322 VLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 +LS RI L++ E S+ I +N +P+ R+ADTTVEL G + V+ GL+ Sbjct: 313 ILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFVIGGLVSRT 372 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + +P L +PI+G+ F+ +N+EE E+ I TP LV+P+A Sbjct: 373 TLSNVDKVPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMA 418 >gi|300694111|ref|YP_003750084.1| pilus assembly protein (cpac) [Ralstonia solanacearum PSI07] gi|299076148|emb|CBJ35461.2| putative pilus assembly protein (cpaC) [Ralstonia solanacearum PSI07] Length = 462 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 96/414 (23%), Positives = 176/414 (42%), Gaps = 45/414 (10%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMYLFGK 92 + + + + + +++ ++ + + +P AD ++ ++ + K Sbjct: 23 PGVHAQSMPADQALHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLIVAK 82 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G AN+++ G + ++ ++ D ++ T VL G V+ Sbjct: 83 KPGAANIMVWTQGGTAI-TYNVQVDAAPRG------AGSPDLAVQ----GATAVLTGQVK 131 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 L+ + + S S +++ IA V + V + E + +LK+ Sbjct: 132 D------VYSLARARKAAAVAGGAEPSKSGSMVDNTTIAVPGTVQVDVRVVEFSKTVLKE 185 Query: 213 IGFQHS--------ITGSSSGPSKSFAADFGGKFVSEGG-----------DFSVKGVLDR 253 GF S + S S S++ A S G F++ Sbjct: 186 AGFSFSRTRGGFTFGSYSPSSLSQATPAWLSSTASSSSGLTVQSTQPVSTAFNLLLSSVS 245 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 L +E R LAEP+L A+SGQSA+F +GG+ V + G T++ +G Sbjct: 246 KGIFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFG 304 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + L +PT+LS RI L++ E S+ I +N +P+ R+ADTTVEL G + V Sbjct: 305 IGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFV 364 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + GL+ + +P L +P++G+ F+ +N+EE E+ I TP LV+P+A Sbjct: 365 IGGLVSRTTLSNVDKVPFLGDVPVIGSFFKRLDYNQEERELVIIVTPHLVRPMA 418 >gi|17549308|ref|NP_522648.1| outer membrane channel signal peptide protein [Ralstonia solanacearum GMI1000] gi|17431560|emb|CAD18238.1| probable pilus assembly, secretin cpac signal peptide protein [Ralstonia solanacearum GMI1000] Length = 454 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 171/399 (42%), Gaps = 37/399 (9%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP----RTMYLFGKNVGQANV 99 + + + + +++ ++ + + +P AD ++ ++ + K G AN+ Sbjct: 30 MPADQALHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLIIAKKPGAANI 89 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 ++ G + ++ ++ + D ++ T VL G V+ Sbjct: 90 MVWTQGGTAL-TYNVQVDAEPRG------AGSPDLAVQ----GSTAVLTGQVKD------ 132 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF---- 215 L+ S + V++ +A V + V + E + +LK+ GF Sbjct: 133 VYSLARARKSAAAAGGAEPPKGGSVIDNTTMAVPGTVQVDVRVVEFSKTVLKEAGFIFTR 192 Query: 216 -QHSITGSSSGPSKSFAADFGGKFVSE------GGDFSVKGVLDRFSFETVLHALERATA 268 + T S PS ++ G F++ L +E Sbjct: 193 TRGGFTFGSFSPSSLTQYTVTPSSLTTQSTTPIGTAFNLLISSFSKGIFADLSLIESNGL 252 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 R LAEP+L A+SGQSA+F +GG+ V + G T++ +G+ L +PT+LS RI Sbjct: 253 ARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFGIGLTVSPTILSENRI 311 Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L++ E S+ + +N +P+ R+ADTTVEL G + V+ GL+ + Sbjct: 312 ALKVAPEASDLDFSRGVTLNGATVPAIVTRRADTTVELGDGESFVIGGLVSRTTLSNVDK 371 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +P L +PI+G F+ +N+EE E+ I TP LV+P+A Sbjct: 372 VPFLGDVPIIGTFFKRLNYNQEERELVIIVTPRLVRPMA 410 >gi|116052338|ref|YP_792649.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115587559|gb|ABJ13574.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 416 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 97/424 (22%), Positives = 174/424 (41%), Gaps = 71/424 (16%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + ++ + + L++ V ++ + + DP ADV + R + GK G ++++ Sbjct: 36 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + L + +E G V T Sbjct: 96 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ---IGFQHSIT 220 G + +++++ N QV + EV R LKQ + Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161 Query: 221 GSSSGPSKSF------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G S A G G + + + ++ALE + TLA Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++ Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281 Query: 335 EVSEP--VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE G+ +G +P+ RVR+ DT+V L G + V++GL + + P L Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA----MRDLSRPDDHYSVEDDAKAFFFN 446 IPILGA FR+++ ++++ E+ + TP LV+P+A + DL + ++ +F Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401 Query: 447 RVNK 450 R Sbjct: 402 RGEY 405 >gi|313106823|ref|ZP_07793035.1| RcpA [Pseudomonas aeruginosa 39016] gi|310879537|gb|EFQ38131.1| RcpA [Pseudomonas aeruginosa 39016] Length = 416 Score = 243 bits (619), Expect = 7e-62, Method: Composition-based stats. Identities = 97/424 (22%), Positives = 174/424 (41%), Gaps = 71/424 (16%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + ++ + + L++ V ++ + + DP ADV + R + GK G ++++ Sbjct: 36 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + L + +E G V T Sbjct: 96 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ---IGFQHSIT 220 G + +++++ N QV + EV R LKQ + Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161 Query: 221 GSSSGPSKSF------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G S A G G + + + ++ALE + TLA Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++ Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281 Query: 335 EVSEP--VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE G+ +G +P+ RVR+ DT+V L G + V++GL + + P L Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA----MRDLSRPDDHYSVEDDAKAFFFN 446 IPILGA FR+++ ++++ E+ + TP LV+P+A + DL + ++ +F Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401 Query: 447 RVNK 450 R Sbjct: 402 RGEY 405 >gi|218893396|ref|YP_002442265.1| RcpA [Pseudomonas aeruginosa LESB58] gi|254239026|ref|ZP_04932349.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719] gi|296391003|ref|ZP_06880478.1| putative type II secretion system protein [Pseudomonas aeruginosa PAb1] gi|126170957|gb|EAZ56468.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719] gi|218773624|emb|CAW29438.1| RcpA [Pseudomonas aeruginosa LESB58] Length = 416 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 97/424 (22%), Positives = 174/424 (41%), Gaps = 71/424 (16%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + ++ + + L++ V ++ + + DP ADV + R + GK G ++++ Sbjct: 36 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + L + +E G V T Sbjct: 96 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ---IGFQHSIT 220 G + +++++ N QV + EV R LKQ + Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161 Query: 221 GSSSGPSKSF------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G S A G G + + + ++ALE + TLA Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++ Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281 Query: 335 EVSEP--VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE G+ +G +P+ RVR+ DT+V L G + V++GL + + P L Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA----MRDLSRPDDHYSVEDDAKAFFFN 446 IPILGA FR+++ ++++ E+ + TP LV+P+A + DL + ++ +F Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401 Query: 447 RVNK 450 R Sbjct: 402 RGEY 405 >gi|207724789|ref|YP_002255186.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum MolK2] gi|206590014|emb|CAQ36975.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum MolK2] Length = 447 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 97/418 (23%), Positives = 176/418 (42%), Gaps = 45/418 (10%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMY 88 A + + G + + +++ ++ + + +P AD ++ R ++ Sbjct: 4 AALAPGVHAQNMPDGPVLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLL 63 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 + K G A++++ G + ++ ++ + D ++ T VL Sbjct: 64 IVAKKPGAASIMVWTQGGTAI-TYNVQVDAEARG------AGSPDLAVQ----GGTAVLT 112 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G VR L+ + + +++ +A V + V + E + Sbjct: 113 GQVRD------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVPGTVQVDVRVVEFSKT 166 Query: 209 ILKQIGFQHSIT------GSSSGPSKSFAADFGGKFVSE-------------GGDFSVKG 249 +LK+ GF S T G+ S S S A + F++ Sbjct: 167 VLKEAGFSFSRTRGGFTFGAYSPSSLSQATPSWLSSTASSSSGLTVQSTQPVSTAFNLLL 226 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 L +E R LAEP+L A+SGQSA+F +GG+ V + G T++ Sbjct: 227 SSVSKGLFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEY 285 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSG 365 +G+ L +PT+LS RI L++ E S+ I +N +P+ R+ADTTVEL G Sbjct: 286 KPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDG 345 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + V+ GL+ + +P L +PI+G+ F+ +N+EE E+ I TP LV+P+A Sbjct: 346 ESFVIGGLVSRTTLSNVDKLPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMA 403 >gi|15599500|ref|NP_252994.1| RcpA [Pseudomonas aeruginosa PAO1] gi|254244885|ref|ZP_04938207.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192] gi|9950526|gb|AAG07692.1|AE004846_9 RcpA [Pseudomonas aeruginosa PAO1] gi|126198263|gb|EAZ62326.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192] Length = 416 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 96/424 (22%), Positives = 171/424 (40%), Gaps = 71/424 (16%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + ++ + + L++ V ++ + + DP ADV + R + GK G ++++ Sbjct: 36 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + L + +E G V T Sbjct: 96 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ---IGFQHSIT 220 G + +++++ N QV + EV R LKQ + Sbjct: 117 -------RGAPAFTVGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161 Query: 221 GSSSGPSKSF------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G S A G G + + + ++ALE + TLA Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++ Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281 Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE I +P+ RVR+ DT+V L G + V++GL + + P L Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA----MRDLSRPDDHYSVEDDAKAFFFN 446 IPILGA FR+++ ++++ E+ + TP LV+P+A + DL + ++ +F Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401 Query: 447 RVNK 450 R Sbjct: 402 RGEY 405 >gi|107100112|ref|ZP_01364030.1| hypothetical protein PaerPA_01001133 [Pseudomonas aeruginosa PACS2] Length = 408 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 97/424 (22%), Positives = 173/424 (40%), Gaps = 71/424 (16%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 + + ++ + + L++ V ++ + + DP ADV + R + GK G ++++ Sbjct: 28 LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 87 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + L + +E G V T Sbjct: 88 GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 108 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ---IGFQHSIT 220 G + + +++ N QV + EV R LKQ + Sbjct: 109 -------RGAPAFTVGAVEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 153 Query: 221 GSSSGPSKSF------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G S A G G + + + ++ALE + TLA Sbjct: 154 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 213 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P+L A+SGQSASF +GG+ + + ++ ++G+ L TPTV++ RI L++ Sbjct: 214 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 273 Query: 335 EVSEP--VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 EVSE G+ +G +P+ RVR+ DT+V L G + V++GL + + P L Sbjct: 274 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 333 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA----MRDLSRPDDHYSVEDDAKAFFFN 446 IPILGA FR+++ ++++ E+ + TP LV+P+A + DL + ++ +F Sbjct: 334 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 393 Query: 447 RVNK 450 R Sbjct: 394 RGEY 397 >gi|170696786|ref|ZP_02887895.1| type II and III secretion system protein [Burkholderia graminis C4D1M] gi|170138302|gb|EDT06521.1| type II and III secretion system protein [Burkholderia graminis C4D1M] Length = 479 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 117/454 (25%), Positives = 189/454 (41%), Gaps = 47/454 (10%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVIL 101 G +++ I + L ++ V + DP+ ADV++ + L GK+ G NV+L Sbjct: 29 GGAEQLDIAVGSQQSLAGGHTLRRVAIGDPSVADVLIIKGDKTGGVLLIGKSPGTTNVML 88 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 L+ + + A + + V+++ DT ++ G T++ RA Sbjct: 89 WEQGKDAPLSYVVNVSSPAA------KSLLGPGTPSVKVLGDTALITGAAPTMEAHHRAA 142 Query: 162 ELSETFLSQ---------------------SGRNQYANSSSK--KVMNLLNIAGEDQVTL 198 +E Q G N ANS+S ++ + IA V + Sbjct: 143 AAAEIEAHQRAALGGAGGIGTADGAKSGANGGPNGSANSASNNAQIYDTSTIATRSVVQV 202 Query: 199 KVTIAEVRRDILKQIGFQ-----HSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVK 248 V + E R +LKQ+G + T S PS +A +G F++ Sbjct: 203 DVRVVEFSRTVLKQVGLNILKQNNGFTFGSFAPSALTSATYGPTPSFSSVAPISSAFNLV 262 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 L +E R LAEPTL A+SGQSASF +GG+ + G TS+ Sbjct: 263 FNSATHGLFADLSLMESNNLARILAEPTLVALSGQSASFLAGGEIPVP-IPQGLGTTSIE 321 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPS 364 YGV L TPTVLSP RI L++ E S+ + ++ +P+ R+ DTTVEL Sbjct: 322 YKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAITTRRTDTTVELGD 381 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G + V+ GL+ + +PLL +P++GA F+ + + + E+ I TP LV P+A Sbjct: 382 GESFVIGGLIDRETISNVAKVPLLGDLPVIGAFFKQLNYQQNDKELVIIVTPHLVSPLAK 441 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 E + + + + A Sbjct: 442 GATLPATPGEQSEQRNAPVWRSLIGGVAARDAAP 475 >gi|83747917|ref|ZP_00944949.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551] gi|207739458|ref|YP_002257851.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum IPO1609] gi|83725450|gb|EAP72596.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551] gi|206592834|emb|CAQ59740.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum IPO1609] Length = 462 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 97/414 (23%), Positives = 175/414 (42%), Gaps = 45/414 (10%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMYLFGK 92 + + G + + +++ ++ + + +P AD ++ R ++ + K Sbjct: 23 PGVHAQSMPDGPVLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLLIVAK 82 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G A++++ G + ++ +E + D ++ T VL G VR Sbjct: 83 KPGAASIMVWTQGGTAI-TYNVQVEAEARG------AGSPDLAVQ----GGTAVLTGQVR 131 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 L+ + + +++ +A V + V + E + +LK+ Sbjct: 132 D------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVPGTVQVDVRVVEFSKTVLKE 185 Query: 213 IGFQHSIT------GSSSGPSKSFAADFGGKFVSE-------------GGDFSVKGVLDR 253 GF S T G+ S S S A + F++ Sbjct: 186 AGFSFSRTRGGFTFGAYSPSSLSQATPSWLSSTASSSSGLTVQSTQPVSTAFNLLLSSVS 245 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 L +E R LAEP+L A+SGQSA+F +GG+ V + G T++ +G Sbjct: 246 KGLFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFG 304 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + L +PT+LS RI L++ E S+ I +N +P+ R+ADTTVEL G + V Sbjct: 305 IGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFV 364 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + GL+ + +P L +PI+G+ F+ +N+EE E+ I TP LV+P+A Sbjct: 365 IGGLVSRTTLSNVDKLPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMA 418 >gi|319779649|ref|YP_004130562.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella equigenitalis MCE9] gi|317109673|gb|ADU92419.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella equigenitalis MCE9] Length = 508 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 171/392 (43%), Gaps = 32/392 (8%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 K I + + ++ +L + V V + + + + LFG + G + + Sbjct: 32 TPKAIKMEIGQIEVLNF-QSIGRVAVGNSKLLNATTSDDKELVLFGLSEGFTTLQVWDKG 90 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 G ++ + L ++R + N++ +++D V++ G + D ++ V+L+ Sbjct: 91 GSSSSYRVVIESANQNKLLKDIQRILNKIPNVKTSVIADKVIVEGDKLSDFDREKVVQLT 150 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV-TLKVTIAEVRRDILKQIGFQHSIT--- 220 + + +++++ + G D++ + V I E+ R ++Q+G + T Sbjct: 151 KHY--------------PQIIDMSSQVGWDEMLMIDVQIVELPRQFVQQLGLRWGTTAEG 196 Query: 221 ---------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAI 269 GS++ + ++ ++ V G + + ++A+ Sbjct: 197 GVQIGATLEGSTAKKAFAYQSNLLANSVGNAGAIANPAFFGGINAFLNASINAMAVEGQA 256 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 LA+P LTA +G +A F +GG+ Y V A +V YGV L+ TP + G + Sbjct: 257 VVLAQPQLTARNGTTAEFLAGGEVPYSMVDDKGQAQTV-FKPYGVSLNITPRIQRDGTVR 315 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 +I EVS +N P+ + R+ T SG IV++G + D Q +P ++ Sbjct: 316 SKINVEVSTVDTSMNLNGGPALKTRRTSTEFNTKSGEPIVISGFISRDQMQSMTKVPGIA 375 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + PILG LF++ F ETE+ I P++VKP Sbjct: 376 ETPILGELFKSRNFQNNETELVIIVRPYVVKP 407 >gi|94312586|ref|YP_585795.1| pilus assembly protein [Cupriavidus metallidurans CH34] gi|93356438|gb|ABF10526.1| pilus assembly protein [Cupriavidus metallidurans CH34] Length = 473 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 89/432 (20%), Positives = 175/432 (40%), Gaps = 37/432 (8%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH----SPRTMYLFGK 92 + + + + ++ ++ V V +P AD ++ P T+ + + Sbjct: 44 PPTGSFDTAGSRTLRLLAGAQQEIRPGQALERVAVGNPEVADALLLKHRGGPSTVLVVAR 103 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G ++ + D ++ + ++ +R +++ + ++ G Sbjct: 104 KPGVTDLKIWSRD-VAPVSYTVRVDA--------VRPDPGGASVDLSSAGASI--SGESP 152 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + R + + +S + + V++ + V + V + E+ + +LK+ Sbjct: 153 DAPAAARTLMAARAAVSSADGKRAGV-----VVDRSTVPVSGTVQVDVKVVEISKTVLKE 207 Query: 213 IGFQH---------SITGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLDRFSFETVL 260 IG SS +F G F++ L Sbjct: 208 IGLNFYRDNGGFAFGTFSPSSLTKATFTPGVGTVVDSVSPISSAFNLIAGSVSKGIFANL 267 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 +E +R LAEP+L A+SGQSASF +GG+ V + G T++ +G+ L +P Sbjct: 268 SLMEANGLVRVLAEPSLVALSGQSASFLAGGEIPIP-VPQALGTTTIQYKPFGIGLTVSP 326 Query: 321 TVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TV+S RI L++ E S+ +N +P+ R+ADTT+EL G + V+ GL+ Sbjct: 327 TVMSRERIALKVAPEASDLDPSRGIVLNGATVPAIVTRRADTTIELGDGESFVIGGLVSR 386 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + +P L +P++G+ F+N F++E+ E+ I TP L+KP+A + Sbjct: 387 NTVSNVSKVPFLGDLPVIGSFFKNLNFHQEDRELMIVVTPHLIKPLAKDSPAAAGASQDG 446 Query: 437 EDDAKAFFFNRV 448 A + R Sbjct: 447 RTSANPNVWGRY 458 >gi|307730006|ref|YP_003907230.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] gi|307584541|gb|ADN57939.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] Length = 490 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 107/447 (23%), Positives = 182/447 (40%), Gaps = 67/447 (14%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKN 93 + + G +++ + + L ++ V + DP+ ADV++ + L GK+ Sbjct: 12 ASPAGFAAGGAQQLELLVGSQQSLASGHTLRRVAIGDPSVADVLIIKGDKTGGVLLVGKS 71 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G NV+L L+ + + A + + V ++ D+ ++ G T Sbjct: 72 PGSTNVMLWEQGKDAPLSYVVNVSSPAA------KSLLGPGTPSVRVLGDSALISGSAPT 125 Query: 154 IQDSQRAVE-------------------------------------------LSETFLSQ 170 ++ QRAV + + + Sbjct: 126 MEAHQRAVAAAAIEARQRATLGTVANSAANSAAAGASVGRGGRGTAVSGMSGAAGSDATN 185 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-----HSITGSSSG 225 G + + ++ + +A V + V + E R +LKQ+G + T S Sbjct: 186 GGASFASAMGDAQIYDTSTVATRSVVQVDVRVVEFSRTVLKQVGLNILKQNNGFTFGSFA 245 Query: 226 PSKSFAADFG-----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 PS +A +G F++ L +E R LAEPTL A+ Sbjct: 246 PSALSSATYGPTPSFNSVAPISSAFNLVFNSATRGLFADLSLMESNNLARILAEPTLVAL 305 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-- 338 SGQSASF +GG+ + G TS+ YGV L TPTVLSP RI L++ E S+ Sbjct: 306 SGQSASFLAGGEIPVP-IPQGLGTTSIEYKPYGVGLTLTPTVLSPQRIALKVAPEASQLD 364 Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + ++ +P+ R+ DTTVEL G + V+ GL+ + +PLL +P++GA Sbjct: 365 FANAVTISGVSVPAITTRRTDTTVELGDGESFVIGGLIDRETISNVAKVPLLGDLPVIGA 424 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVA 423 F+ + + + E+ I TP LV P+A Sbjct: 425 FFKQLNYQQNDKELVIIVTPHLVSPLA 451 >gi|239817412|ref|YP_002946322.1| type II and III secretion system protein [Variovorax paradoxus S110] gi|239803989|gb|ACS21056.1| type II and III secretion system protein [Variovorax paradoxus S110] Length = 457 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 106/437 (24%), Positives = 175/437 (40%), Gaps = 64/437 (14%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 S+ A A+A + + + + L + ++ + + Sbjct: 21 FSLIALCVLALGAWPIATNAADATPVRPQ-----PQRPLILNAGTQQELLIEKGIERMAI 75 Query: 72 SDPTKADVVVHSPR------TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 +D A + V + + GK G+ +++ I + R Sbjct: 76 ADEAVAAITVTRKGPNSPAARLIITGKAAGRTTLMIWEKGNSAATTYSIEVRR------- 128 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 + L G + ++ Q+A E + +G + A + V+ Sbjct: 129 -----------------RSATLAGTMDSVAAHQQARETA-----MAGMPEKAELIDRSVV 166 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQ------------IGFQHSITGSSSGPSKSFAAD 233 N+ + V ++V + E R +LKQ GF + G SS S +FA++ Sbjct: 167 NV----RSNTVQVEVKVVEFNRSVLKQAGLNIFSTRANSNGFSFGVFGPSSLGSTTFASN 222 Query: 234 ---FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G FS+ + + LE R LAEPTL A+SGQSASF +G Sbjct: 223 GSISGEYHNPLAQAFSLLFNFGKAGVGLNVGFLEGNGMARVLAEPTLVAMSGQSASFLAG 282 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAG 346 G+ G TS+ +G+ L TPTVLS RI L++ E S+ + + Sbjct: 283 GELPVP-APQGLGTTSIEYKPFGIGLTLTPTVLSNDRIVLKVAPEASDLDYTNSLSIGGV 341 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P+ R+ADTTVEL G + ++ GL+ + +PLL +PILG FR +++ Sbjct: 342 AVPAITTRRADTTVELGDGESFIIGGLVSRTTTSNVDKVPLLGDLPILGTFFRQNKYQMS 401 Query: 407 ETEIFIAATPFLVKPVA 423 E E+ I TP LVKP+A Sbjct: 402 EKELVILVTPHLVKPIA 418 >gi|319788661|ref|YP_004148136.1| type II and III secretion system protein [Pseudoxanthomonas suwonensis 11-1] gi|317467173|gb|ADV28905.1| type II and III secretion system protein [Pseudoxanthomonas suwonensis 11-1] Length = 502 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 98/421 (23%), Positives = 172/421 (40%), Gaps = 37/421 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ + + +VP ++ V V D V + G G+ NV L +G Q Sbjct: 94 LTLHAGEAAVRRVPAALRRVAVGDGEILSVHTVGRNELVFIGTQPGETNVHLWLGNGTQ- 152 Query: 110 LNLDILIERDIA-HLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + + + + + T+R + + + V V VV+ G S + L + + Sbjct: 153 RTVAVNVTGSRSDGVAATVRELLGNHPDVAVRAVGSNVVISGGELDAATSAKIAALQKLY 212 Query: 168 LSQSGRNQYANSSSKKVMNLLN---IAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGS 222 +V+N + V + VTI E +D ++ +G + +I+G Sbjct: 213 --------------PQVLNFAGSDPVGMRPMVRMDVTIMEFNKDAVEDLGIRWDSTISGP 258 Query: 223 SSGPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVL----HALERATA 268 G + + + + E + G F T + + L Sbjct: 259 IGGLIRDVTTNDYFRVLPEDNRTFDEIREQLPTRLPGPQGYFGIATTIGSQINLLMSRGK 318 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 LAEP L+A SG +A+F GG+ + S G T + +YG+ L+ +P V S + Sbjct: 319 AWVLAEPKLSARSGSNATFLVGGEVPI-VIPSVLGQTQIEYKEYGIRLNISPNVNSAREV 377 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 I EVS V +P + R+A+T + + +G TIV++GLL + + + P+L Sbjct: 378 ATSIMAEVSRIDPSVAVQGVPGFLTRRAETEINVLAGQTIVISGLLDREAAKSVDKFPIL 437 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IPILG LFR+ F TE+ I TP +V P + +L +E ++ R Sbjct: 438 GDIPILGRLFRSDGFRGNRTELVIFVTPHIVTPDSPENLEELHRGDRIEQSLESEISPRQ 497 Query: 449 N 449 N Sbjct: 498 N 498 >gi|215433395|gb|ACJ66663.1| outer bacterial membrane secretin family protein [Myxococcus fulvus HW-1] Length = 482 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 106/445 (23%), Positives = 187/445 (42%), Gaps = 67/445 (15%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +S+G+ ++ +P + V + DP+ ADV + + G+ G+ +++ G Sbjct: 28 GTNVSLGVGSQKVITIPG-LSRVALGDPSIADVKTLGSGQLLITGQAEGKTTLLVWKSSG 86 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-- 163 +++ L + ++D + ++R + + + V MV D + L G T QD+ R ++ Sbjct: 87 QRVSYLVAVRKQDPNEVITEIKRLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVG 146 Query: 164 -----------------------------------------SETFLSQSGRNQY------ 176 + FL S +Q Sbjct: 147 LYPNVKSFVKIAPNAKKLVAQNLNAAFQKAGLKNVQANVVGATIFLEGSVESQQDLQKAE 206 Query: 177 --ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAA 232 + +KV NLL + + + +V E+RR+ + G ++ ITG++S + Sbjct: 207 LITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYPTDITGTASAIANISQE 266 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 F G F S ++ D FSF + R LA+P L SG+ A F +GG+ Sbjct: 267 LFPGTFGSGVSTLALNANSD-FSFGFQGN----DGYGRLLAQPKLVCASGEKAEFLAGGE 321 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGD 347 ++ +V YGV+L+ PT G I I+ E SE V + Sbjct: 322 VPIPLIT--NNQFTVEFKKYGVILNLRPTADRNGNIQTEIEAEASEIDTSVAVSFGGSSS 379 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P +R R+ T V + G TIVL+G+ D Q+ +P L IPI+G LF++ F+ + Sbjct: 380 IPGFRTRRVKTNVTVRHGETIVLSGVFSHDEQKSVSKLPGLGHIPIVGELFKSRGFDSTK 439 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDD 432 E+ I TP +V P + + + +D Sbjct: 440 RELVIFVTPRIVNPDSDKVRTIIED 464 >gi|317403496|gb|EFV84000.1| hypothetical protein HMPREF0005_03138 [Achromobacter xylosoxidans C54] Length = 458 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 114/433 (26%), Positives = 184/433 (42%), Gaps = 35/433 (8%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILI 102 + I++ + L + + + DP ADV V + ++ L+GK G + + Sbjct: 40 RDIAVAVKGQQALMLDGAPVRIAIGDPDVADVKVLAASGKRQASVLLYGKKAGTTQLQIW 99 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 + + ++ + + V++ + V+ G + Q Sbjct: 100 TGANAAPQVWTVRVAGNV---QQVMAGRGVAGGANVDVAGERAVVSGQAESPLTHQ---- 152 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 S A K V+++ V ++V + EV R ++KQ G + Sbjct: 153 -------ASVAAAGAAVGDKNVVDVSTAGSGGVVQVEVKVVEVSRSVMKQAGISFAGRSG 205 Query: 223 SSGPSKSFAAD-FGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLT 278 G + S D F G G D F L L+ R LAEPTL Sbjct: 206 PWGSTNSITPDGFPAPLGFNKGAALASGFSLFYDSNDFSARLRLLQNNGMARVLAEPTLV 265 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A++GQSASF +GG+ G T+VT +G+ L TPTVLS RI L++ E SE Sbjct: 266 ALTGQSASFLAGGELPIPEA-GGLGTTTVTFKPFGIGLTVTPTVLSRERIALKVAPEASE 324 Query: 339 --------PVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 G N+ +P+ R R+ADTTVEL G + V++GL+ + L +P+L Sbjct: 325 LDYSNAIAVSNGTNSTTLIPALRTRRADTTVELGDGESFVVSGLVSRQTRALVNKVPMLG 384 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 +PI+G+ FR+ + +E+TE+ I TP LV+P+A R ++ P E A F Sbjct: 385 DLPIIGSFFRSVDYTQEDTELVIVVTPRLVRPIA-RGVTLPLPGAKQE-AADTAFNAWGY 442 Query: 450 KIYGPKEASEVEG 462 + GP ++ G Sbjct: 443 YLMGPVGGQQMPG 455 >gi|78486068|ref|YP_391993.1| type II and III secretion system protein [Thiomicrospira crunogena XCL-2] gi|78364354|gb|ABB42319.1| Flp (type IV) pilus assembly protein CpaC homolog [Thiomicrospira crunogena XCL-2] Length = 520 Score = 237 bits (604), Expect = 4e-60, Method: Composition-based stats. Identities = 102/464 (21%), Positives = 201/464 (43%), Gaps = 69/464 (14%) Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD--GKQMLNLD 113 + I++ ++ LV++P A++ V + + + + GK G+ +I+ + ++ Sbjct: 37 ESQIVKFDYPIKRALVANPDLANLKVLNSKELLVSGKQAGKTELIIWYKKAPNQVGRHIV 96 Query: 114 ILIERDIA-------HLEMTLRRFIADSNIR-----------------VEMVSDTVVLHG 149 + + D + + +R+ D ++ ++ V + + Sbjct: 97 LKVAPDASRREEIEQTVSTLIRQLDPDKKVKFVLKNIWIESNSSVRRELDNVGNQIDNDS 156 Query: 150 MVRT--------IQDSQRAVEL----------------SETFLSQSGRNQYANSSSKKVM 185 +++ +Q++Q+A L + ++ V+ Sbjct: 157 TIKSKGNKNQDILQETQKAGSLNIKPVAGNYMVLLTGEVPNKARKKRIQSVISALGLSVV 216 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGF-------QHSITGSSSGPSKSF------AA 232 N++++ G+ Q+ L V +AEV + + G + I + +++ Sbjct: 217 NMIDVTGKSQIKLSVRVAEVVKGNPFKSGVAIRDKKDRFGIFPPGNLGTQALFSLNNSPG 276 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 D G F + + S VL LE R LA+P L SG++A+F GG+ Sbjct: 277 DTAGISFPHPDAFQIGFNPENGSIFGVLSLLEGHNLARVLAKPELIVQSGETATFLVGGE 336 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDM 348 V+ + +V+ +YGV L F+P V G I + ++ EVS+ N + Sbjct: 337 VAIP-VAQNADTITVSYKEYGVRLRFSPIVTESGDIQMTVEPEVSDIDAANGTQTNNIII 395 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS+R RK TT+ L G + ++ GLL+D+I+ +P+L IPILGALFR++ + +++ Sbjct: 396 PSFRSRKTSTTITLAPGQSFIIGGLLQDNIRSQVSKVPVLGDIPILGALFRSNSYVHDKS 455 Query: 409 EIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 E+ I TP V PV A + +S P ++ + AFF +V ++ Sbjct: 456 ELAIMVTPTFVAPVDAGKKVSLPGENLKRPSNMDAFFLGKVAEV 499 >gi|149927033|ref|ZP_01915291.1| type II/III secretion system protein [Limnobacter sp. MED105] gi|149824254|gb|EDM83474.1| type II/III secretion system protein [Limnobacter sp. MED105] Length = 473 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 105/452 (23%), Positives = 182/452 (40%), Gaps = 58/452 (12%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 ++ + + L S +V + P + A + +++ ++ Sbjct: 8 LKSVVAAISLIACAGLISPQVAVGQTPAAPSSAAPFV------------LTLSTGFQKVI 55 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRT-------MYLFGKNVGQANVILIGHDGKQMLNLD 113 +P V + DPT A V V P + + G G ++++ + Sbjct: 56 SLPGIPARVSIGDPTIASVTVLKPTDRGGKNAGVLVTGLKTGSTSLLIWDRGASMARVIT 115 Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 + + A TL+ ++ +E + L G + Q+A E S Sbjct: 116 VSVTGKAAETISTLK------DLNLETEGQVLKLSGSTPNVSTYQQARE--------SLI 161 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-- 231 ++ ++++ I V + V + E R L+++G + + G + S A Sbjct: 162 KPGSDGKPAELIDQATIQTSGTVQVDVKVVEFTRSELQRLGINLTGQVNGGGFTYSIAGP 221 Query: 232 ---ADFGGKFVSEGGDFSVKGVLDRFSFETV---------------LHALERATAIRTLA 273 + GG + F+ G + + L+ L+ + LA Sbjct: 222 ASVSGSGGVSNAFSLAFNGAGCVGEAVIGALNPTPVGPRTCDLVSGLNILQADGYAKVLA 281 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 EP+L A SGQ ASF +GG+ V S G + +GV L FTPT+LS I LR+ Sbjct: 282 EPSLIAQSGQDASFLAGGEIPIP-VPSGNGTIGIEYKKFGVGLSFTPTILSNKTIALRVS 340 Query: 334 TEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 EVS+ + +P+ R+A TTVEL + V+ GL+ +I +P LS Sbjct: 341 PEVSDLDFSRGTSIQGVLVPAILTRRASTTVELGENQSFVIGGLISRNIIANANRVPWLS 400 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +IPILGA F+ + ++RE+ E+ I TP VKP Sbjct: 401 EIPILGAFFKGNTYSREDKELLIIVTPRFVKP 432 >gi|77456876|ref|YP_346381.1| type II and III secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77380879|gb|ABA72392.1| putative Flp pilus assembly protein, secretin [Pseudomonas fluorescens Pf0-1] Length = 422 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 112/452 (24%), Positives = 188/452 (41%), Gaps = 48/452 (10%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 R FT + +L S SVA + A ++ + + +G +Q PV Sbjct: 2 RKRFTPLFHWLQFSLLSVASIGSAAAATGNCAALAPLPA----VLEVGEGLQQAVQSPVA 57 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 + V V DP ADV V + + L G G +++ + + + Sbjct: 58 ITRVAVGDPKIADVRVTGDQGVLLTGVGPGATTLMIWTACASTPRQSMVFV-------QG 110 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 + + + + + +Q R VE+S T L ++G + Y S+ + Sbjct: 111 KASAAMTAAALPSSSEPN------LPSQVQTDIRFVEVSRTKLKEAGTSIYGKGSNNFLF 164 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 VT V +I + PS A D F Sbjct: 165 GAPGTVPNTGVTPGVVPL-------------LNIDPRIAAPSIPLANDM----------F 201 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 ++ F +++ALE + TLA P+L A+SGQSASF +GG+ S+++ + Sbjct: 202 NIVWGGGSSKFLGIVNALEGSGFAYTLARPSLVALSGQSASFLAGGEVPIPVPSANSNSY 261 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVE 361 S+ ++G+ L TPTV+S RI L++ EVS + + +P++ +R+ DT++ Sbjct: 262 SIEYKEFGIRLTLTPTVVSNDRIALKVAPEVSELDYNNGVTIGGTKVPAFTIRRTDTSIS 321 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L G + V++GL+ P L IP+LGA FRNS NREE E+ + TP LV+P Sbjct: 322 LADGESFVISGLISTRNASEVNKFPGLGDIPVLGAFFRNSSINREERELLMIVTPHLVQP 381 Query: 422 VAMRD--LSRPDDHYS--VEDDAKAFFFNRVN 449 +A+ S P + + + +F N Sbjct: 382 LAVNAPLPSLPGEKLRNYDPNWYRLYFLENGN 413 >gi|190574779|ref|YP_001972624.1| putative exported fimbriae assembly protein [Stenotrophomonas maltophilia K279a] gi|190012701|emb|CAQ46329.1| putative exported fimbriae assembly protein [Stenotrophomonas maltophilia K279a] Length = 451 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 108/424 (25%), Positives = 177/424 (41%), Gaps = 44/424 (10%) Query: 62 VPVDVQDVLVSDPTKADVVVH-SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P D++ V ++DP AD+V+ R L GK G ++L + L + ++ + Sbjct: 46 LPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHRKQAEPQRLQVRVQSAV 105 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + + + +L G ++ + + + L + G A++ Sbjct: 106 QG-----AADAGSNGLVFTQQDNQGLLQGSTDSVLSHMQEQKTAAMALGKDGLLADASTV 160 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAA 232 S + + + + + LKQIG S G Sbjct: 161 SSGGVVQVEVKVVE----------FNKTALKQIGISFQNRNGSFAYGFARPGGQLPGNTG 210 Query: 233 DFGGKFVSEGGDFSVKGVLDRF---------SFETVLHALERATAIRTLAEPTLTAISGQ 283 G G+ + + F + + L+ R LAEPTL A+SGQ Sbjct: 211 ILPGMKEGNSGNEAESPISSAFRLVFGSTKGLWNADVDLLQSNGMARVLAEPTLVALSGQ 270 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339 SASF +GG+ G T++T +G+ L TPTVL+P RI L++ E S+ Sbjct: 271 SASFLAGGELPILE-PQGLGTTTITYKPFGIGLTVTPTVLAPNRIALKVAPEASDLDYSN 329 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 I +N +PS R+ADTTVEL G + V+ GL+ ++ IPLL +PI+G+ FR Sbjct: 330 AIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSNVGKIPLLGDLPIIGSFFR 389 Query: 400 NSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 N + R++ E+ I TP LV+P+A +L P + +AK + GP Sbjct: 390 NFDYKRQDKELVIIVTPRLVQPLARNTELPLPGER-----EAKPHMPEWGAWLLGPISQD 444 Query: 459 EVEG 462 V G Sbjct: 445 PVPG 448 >gi|329912918|ref|ZP_08275837.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480] gi|327545493|gb|EGF30693.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480] Length = 608 Score = 236 bits (602), Expect = 7e-60, Method: Composition-based stats. Identities = 99/428 (23%), Positives = 173/428 (40%), Gaps = 44/428 (10%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86 P + A I+ + + G +I + + + + P V + V + + Sbjct: 95 PQVASRPYAPISPQNDQ-GMIPEIEMFVGESRVFPTPG-VARIAVGNGQIMSAAALDEKE 152 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTV 145 + +F VG +++ + DG+ ++ D + + F+ S R ++ D V Sbjct: 153 VIVFANGVGTSSLFVWNADGRYQRVKVSIVPGDTTRIARDVTAFLKSMSGTRTSIIGDKV 212 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG-EDQVTLKVTIAE 204 ++ G + + + L + + +++N N G E V L V + E Sbjct: 213 IIEGDNLSDVELAKIDMLEKRY--------------PQIINFTNQLGWEPMVMLDVKVVE 258 Query: 205 VRRDILKQIGFQHSITG-----------------------SSSGPSKSFAADFGGKFVSE 241 + L+ IG + G S+ + + + G V Sbjct: 259 FPTNELRDIGLKWGSVGGAAVGAIWSPGRRGTDGPYQVNIQSANAAPITSPEGSGSPVRV 318 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G +V L+ L+ L + LA+P L+A SG ASF +GG+ Y + Sbjct: 319 PGGLNVLSALN-LGLNAQLNLLAQQGKASLLAQPQLSARSGTKASFLAGGEFPYSVAT-- 375 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 +V YG+ L P V G I I EVS+ V+ P+ + RK T Sbjct: 376 INGVTVQFKPYGIKLDILPKVDRNGVIRATIDAEVSKIDASVSTVVGPALQTRKTKTEFN 435 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +G TIVLAG+L+ D + +PLL +P+LGALFR+ RF +ETE+ + TP +V Sbjct: 436 VLAGDTIVLAGMLQADNSTSIDKVPLLGDVPVLGALFRSKRFENKETELVVFVTPTIVDS 495 Query: 422 VAMRDLSR 429 + + R Sbjct: 496 RSPALIER 503 >gi|187478776|ref|YP_786800.1| pilus assembly protein [Bordetella avium 197N] gi|115423362|emb|CAJ49896.1| putative pilus assembly protein [Bordetella avium 197N] Length = 426 Score = 236 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 98/390 (25%), Positives = 161/390 (41%), Gaps = 34/390 (8%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 + + ++ + + + +L P V + V + + LF + G + Sbjct: 21 SPAYSAARTQHELVLEVGETRVLDAPG-VTRIAVGSGQVVQAQAVDGKEVILFARKEGVS 79 Query: 98 NVILI-GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQ 155 +V + G G + L ++ H+ + + +A +R+ +V +V+ G Sbjct: 80 SVHVWRGQSGVRAYALRVM-PAGFGHIRAEVEQLLAAMPALRLSVVGHHLVIEGSGLPDH 138 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLKVTIAEVRRDILKQIG 214 D QR L++ + +V++L ++ E V L V + E+ R L ++G Sbjct: 139 DKQRISALAQRY--------------PEVLDLTGDVGWEQMVLLDVQVVELPRARLTELG 184 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 S+ S P +S A +G S L AL + LA Sbjct: 185 MHWSMGAEGSHPVRSHAGVWGSLQWSGAA------------IGARLQALAQRGEAVFLAR 232 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L A SG +ASF +GG+ Y+ S S YGV L TP + G I I+ Sbjct: 233 PRLLARSGSAASFLAGGEVPYRGAESE---ASTVFKPYGVSLKITPRIDPRGTIRSHIEV 289 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 E S + P+ R R+A+T +PSG T+VL G L ++ G+P LS IP+L Sbjct: 290 ESSSIDPTLTVPAGPAMRTRRAETEFNVPSGQTLVLGGFLGRELSSETRGVPWLSDIPVL 349 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424 G LF R +TE+ I TP +V+P Sbjct: 350 GLLFGERRQQNRDTELAIFVTPTIVRPDDP 379 >gi|108762925|ref|YP_631309.1| outer membrane secretin family protein [Myxococcus xanthus DK 1622] gi|108466805|gb|ABF91990.1| protein transporter, outer bacterial membrane secretin (secretin) family [Myxococcus xanthus DK 1622] Length = 482 Score = 236 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 105/445 (23%), Positives = 187/445 (42%), Gaps = 67/445 (15%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G +S+G+ ++ +P + V + DP+ A+V + + G+ G+ +++ G Sbjct: 28 GTTVSLGVGSQKVITIPG-LSRVALGDPSVAEVKTLGSGQLLITGQAEGKTTLLVWKSSG 86 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-- 163 +++ L + ++D + ++R + + + V MV D + L G T QD+ R ++ Sbjct: 87 QRVSYLVAVRKQDPNEVISEIKRLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVG 146 Query: 164 -----------------------------------------SETFLSQSGRNQY------ 176 + FL S +Q Sbjct: 147 LYPNVKSFVKIAPNAKKLVAQNLNAAFQKAGLKNVQANVVGATIFLEGSVESQQDLQKAE 206 Query: 177 --ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAA 232 + +KV NLL + + + +V E+RR+ + G ++ ITG+++ + Sbjct: 207 LITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYPTDITGTATAIASISQE 266 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 F G F S ++ D FSF + R LA+P L SG+ A F +GG+ Sbjct: 267 LFPGTFGSGVSTLTLNANAD-FSFGFQGN----DGYGRLLAQPKLVCASGEKAEFLAGGE 321 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGD 347 ++ +V YGV+L+ PT G I I+ E SE V + Sbjct: 322 VPIPLIT--NNQFTVEFKKYGVILNLRPTADRNGNIQTEIEAEASEIDTSVAVSFGGSAS 379 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P +R RK T V + G TIVL+G+ D Q+ +P L IPI+G LF++ F+ + Sbjct: 380 IPGFRTRKVKTNVTVRHGETIVLSGVFSHDEQKSVSKLPGLGHIPIIGELFKSRGFDSTK 439 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDD 432 E+ I TP +V P + + + +D Sbjct: 440 RELVIFVTPRIVNPDSDKVRTIIED 464 >gi|127511579|ref|YP_001092776.1| type II and III secretion system protein [Shewanella loihica PV-4] gi|126636874|gb|ABO22517.1| type II and III secretion system protein [Shewanella loihica PV-4] Length = 436 Score = 236 bits (601), Expect = 9e-60, Method: Composition-based stats. Identities = 97/399 (24%), Positives = 172/399 (43%), Gaps = 35/399 (8%) Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAH 122 +V+ ++V + V + + L G+ G ++ L DGK + L+L + + + Sbjct: 41 ANVERIVVGNGKVLSAKVVDNKGVLLIGEAPGNTDLQLWQKDGKLIKLSLTVTPDNSLRT 100 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ--RAVELSETFLSQSGRNQYANSS 180 M + A ++ V +++ G Q Q + +E +S ++A + Sbjct: 101 TTMVKKMLAAFPSLTVSESDGLIIVQGEADLAQKEQLEKILEGDPNVVSLVKYLKFAKTM 160 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKF 238 S V ++V I E + L +G + S+ G + G +K F A+ Sbjct: 161 SP------------MVKMQVKIVEFNKSTLNNVGIKWETSMAGPAYGVAKGFTANPIFNV 208 Query: 239 VSEG--------GDFSVKGVLDRFSFETV---------LHALERATAIRTLAEPTLTAIS 281 S G GVLD + ++ + L R LA+P LT S Sbjct: 209 ASPGQYTEAITKSITENIGVLDTRGWSSLGIVSGIGSQIQLLSEKGDARLLAQPNLTTRS 268 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 G+SASF +GG+ ++VS GA V +YG+ L P V I R+ EVS Sbjct: 269 GESASFLAGGEFPIRSVSG-LGAVDVEYKEYGIKLDIEPVVDEQQNIVSRVMAEVSSIDP 327 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 V +P R+ ++ + + + TIV++GL+ ++ ++ PLL IPILG LF++ Sbjct: 328 SVAVDGVPGMLTRRTESVINVKNNETIVISGLVNSEMSKIVNKFPLLGDIPILGELFKSR 387 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 F ++TE+ I TP +V P ++ + + ++A Sbjct: 388 DFKDDKTELVIFVTPVVVYPGQEEHDTQLNRGLEMAEEA 426 >gi|149173675|ref|ZP_01852304.1| probable type II secretion system protein [Planctomyces maris DSM 8797] gi|148847205|gb|EDL61539.1| probable type II secretion system protein [Planctomyces maris DSM 8797] Length = 744 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 108/477 (22%), Positives = 199/477 (41%), Gaps = 52/477 (10%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 + G ++ I + + ++ ++ ++DP+ + V +SP + + G + Sbjct: 134 PLPTQIRSTPGIFDEMEIIIRRSQLIITNSRIRRYAIADPSIIEFVTYSPTEISIVGLEL 193 Query: 95 GQANVILIGHDGKQMLNLDILIERDIA----------HLEMTLRRFIADSNIRVEMVSDT 144 G + L + + +D + LE + +S + + +S Sbjct: 194 GTTTLTLWFEGDDTPITYLVHTIQDPSLEGQRRIDYGKLERKIAVLFPNSKVYLIPLSRK 253 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA--------------------------- 177 +++ G ++ + + + N Sbjct: 254 IIVKGEASDATEAANILSVIRGEVINYEGNLGGPQPYGAGGAYGGGYGAAGGVLDGIGNN 313 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 +S ++N+L I GE QV + VTIA++ R +++Q+G S+ G + + GG Sbjct: 314 GYASSFIVNMLEIPGEFQVMIHVTIAQMNRTMMRQLGVDLSVLFD--GGRQFLGSSMGGV 371 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G+ + +++AL + + +A PTLT +SG SASF +GG+ T Sbjct: 372 PST------LTGIFEAGEVNVLINALAQNGTTKIMARPTLTVLSGHSASFLAGGEFAVPT 425 Query: 298 VSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + GA TS T +G + TP V+ I +RI E S+ G + +P R+ Sbjct: 426 IVGVGGAQGTSTTFRGFGTSIVVTPIVIDKDLIRMRIVPEYSQINDGNSVQGIPGLNSRR 485 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAA 414 A TTVEL G TIVLAGL D IP L +IP++G LF + + ++ E+E+ I Sbjct: 486 AQTTVELREGQTIVLAGLFGHDSSTGVTRIPWLGEIPLVGSYLFSSKQSSQGESELLITV 545 Query: 415 TPFLVKPVAMRDLSR-PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470 TP LV+P+ ++ P +V D + + + G + + + Q Y G Sbjct: 546 TPQLVRPMEEDEVPPYPGFEVTVPQDKELY---KYAMTEGAPDTAVYQLQPYGRGAG 599 >gi|168703130|ref|ZP_02735407.1| putative outer membrane channel for pilus assembly CpaC [Gemmata obscuriglobus UQM 2246] Length = 577 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 110/473 (23%), Positives = 185/473 (39%), Gaps = 31/473 (6%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII-- 59 R +R + + L + + P AA +D++ + +G + Sbjct: 5 RTSRRFLPWALVVTLGLAAVTTGAGQPPDPKGAAP---ADLDKSGAVVVPLGGLRSFDPK 61 Query: 60 LQVPVDVQDVLVSDPTKADVVVH--SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 L+ V D+L S P + L GK G + + ++ D L D++++ Sbjct: 62 LKGGVPPTDILNSREDVLGARPDPNDPTKLLLTGKTAGLSQLTIVQKD-APPLKFDVVVK 120 Query: 118 RDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 D+A L +R + +++ VE + + +VL G V + D+ L+ + + + N Sbjct: 121 PDLAQLRKLIRDTVPTASVTVEPGLGNVIVLSGYVTSPSDADIVQRLANSAVGGANAN-- 178 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V+N + I G QV + V +A V R+ L+ GF ++ G S S + G Sbjct: 179 -------VINAVQIGGVQQVQIDVVVASVDRNQLRSRGFDFALPGRGSFSFSSLVSGLLG 231 Query: 237 KFVSEGGDFSVKGVLDRFSFETV-------LHALERATAIRTLAEPTLTAISGQSASFTS 289 + G + F F V L AL + LAEP + +G+ A F + Sbjct: 232 VQSAGGVTTATFSPDSNFQFAVVPNRFFGALRALRTEGVAKFLAEPRVVTQTGRPAFFRA 291 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNA 345 GGQ + SS VT +G L P V G I L I ++ G V Sbjct: 292 GGQQAIISGSSGITGPGVTLQPFGTELTVVPIVYGNGMIWLDINPRITAVSQGLGITVGG 351 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P + + +TV L SG T + GL+++ + +P+L +P G F Sbjct: 352 SSSPGFTEQSVQSTVLLESGQTFAIGGLIQNSVNASASKVPVLGDLPFAGTYFSRVEHTV 411 Query: 406 EETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 E+E+ I TP LV P+ P DD + F N + G ++ Sbjct: 412 RESELVILVTPRLVHPMDQCQGPKRLPGQETRSPDDYELFLENVLEVPRGQRK 464 >gi|319795779|ref|YP_004157419.1| type II and iii secretion system protein [Variovorax paradoxus EPS] gi|315598242|gb|ADU39308.1| type II and III secretion system protein [Variovorax paradoxus EPS] Length = 462 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 105/423 (24%), Positives = 175/423 (41%), Gaps = 59/423 (13%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 P I A + N + + +G L + + + ++D T A V + Sbjct: 35 APGIWPAASVAANATPPPRQSQIPLVVGAGTQQELLIQKGIDRLAIADETVAGVTITRKT 94 Query: 86 ------TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 + + GK G+ +++ + + R + Sbjct: 95 PNSPAARLIITGKTAGRTTLMVWEKGSASATTYALEVRRRAST----------------- 137 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 L G + ++ + Q+A + + +G + ++N+ + V ++ Sbjct: 138 -------LTGTLDSMVEHQQARDAAS-----AGAGDKTPLVDRSIVNV----RSNTVQVE 181 Query: 200 VTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG--------- 249 V + E R +LKQ G S +S+G S + G K + D S+ G Sbjct: 182 VKVVEFNRSVLKQAGLNIFSTRANSNGFSFGVFSPAGLKSSTFASDGSINGEYNNPLAQA 241 Query: 250 -----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + LE R LAEPTL A+SGQSASF SGG+ V G Sbjct: 242 FSLLFNFGKAGIGLNVGFLEGNGMARVLAEPTLVAMSGQSASFLSGGELPVP-VPQGLGT 300 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360 TS+ +G+ L TPTVLS RI L++ E S+ + +N +P+ R+ADTTV Sbjct: 301 TSIEYKPFGIGLTLTPTVLSNDRIVLKVAPEASDLDYTNSLSINGIAVPAISTRRADTTV 360 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 EL G + ++ GL+ + +PLL +PILG+ F+ +++ E E+ I TP LVK Sbjct: 361 ELGDGESFIIGGLVSRTTTSNADKVPLLGDLPILGSFFKQNKYQMSEKELVILVTPHLVK 420 Query: 421 PVA 423 P+A Sbjct: 421 PIA 423 >gi|317403407|gb|EFV83920.1| hypothetical protein HMPREF0005_02046 [Achromobacter xylosoxidans C54] Length = 453 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 108/437 (24%), Positives = 174/437 (39%), Gaps = 35/437 (8%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 G+ + + + + +L V V + D + R + +F + G +++ + Sbjct: 24 AGQTLEMQVGESRVL-AESGVTRVAIGDSQVLSAIATDSREVVVFARTEGVSSIQVWADG 82 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 G Q ++ + + L + +A R +V VV+ G + D R L+ Sbjct: 83 GVQAYDVHVA-AAGVTRLRAEVDALLARIPGARSSLVGGRVVVEGDDLSDDDHARIAALA 141 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGED-QVTLKVTIAEVRRDILKQIGFQH-SITGS 222 E + +VM+ G D V L V + E+ R L++IG + +T Sbjct: 142 EHY--------------PEVMDFTGRVGWDSMVQLDVQVVEMPRSRLREIGVRWEGLTQG 187 Query: 223 SSGPSKSFAADFGGKFVSEG-----GDFSVKGVLDRFSFETVLHA----LERATAIRTLA 273 ++ A G+ G V V F +L A L ++ LA Sbjct: 188 GVNAGLAWDAGSLGRMARPGEAVIDTPAPVSSVAGYFGVNALLSARIAALAQSGEAVMLA 247 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 +P L A SG SA+F +GG+ Y + S G + YGV L TP + G I I+ Sbjct: 248 QPQLLARSGASATFLAGGEVPY-VSTDSRGNPTTLFKPYGVSLRITPRIDRNGVIRSLIE 306 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 E S + + P+ R R+A T + SG T+V+ G L + G+P L IPI Sbjct: 307 VEASSVDMALTGASGPALRTRRASTEFNVRSGDTLVIGGFLSRERADDSSGLPGLKDIPI 366 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LGALF + R+ ETE+ I TP +V R+ D D F +++ Sbjct: 367 LGALFASRRYQLRETELAIFVTPRIV----SRNEPAMTDRVRRGRDVIRAAFPEPSRL-- 420 Query: 454 PKEASEVEGQNYKGAIG 470 E + G N G G Sbjct: 421 GTEVPVMAGWNIHGGKG 437 >gi|319943382|ref|ZP_08017664.1| type II and III secretion system protein [Lautropia mirabilis ATCC 51599] gi|319743197|gb|EFV95602.1| type II and III secretion system protein [Lautropia mirabilis ATCC 51599] Length = 434 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 105/411 (25%), Positives = 183/411 (44%), Gaps = 41/411 (9%) Query: 32 ANAAVINISDVEIGKG--KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89 A A+V+ S + I++ L + +++V V + + R + L Sbjct: 10 AAASVLRPSSTMTSTDAIETITLSLGQGHLMEVGQ-VLRIALGSGRVLQANWLDDRQLLL 68 Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIA-HLEMTLRRFIAD-SNIRVEMVSDTVVL 147 + G+ + L G + IL+ + L + + + S +R + D ++L Sbjct: 69 IPEAPGETTLHLWLKGGG-IRKYQILVTESNSVRLAQDMNLLLGENSGVRARALGDRILL 127 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVTIAEVR 206 G T + + RA EL + + +V++L++ G +Q + L+V + E+ Sbjct: 128 EGQNPTEEGAWRAAELVKRY--------------PQVISLVSRRGYEQMINLEVKMIEIG 173 Query: 207 RDILKQIGFQHSITGSS----SGPSKSFAADF--GGKFVSEGGDFSVKGVLDRFSF---- 256 R+ LKQ+G + G+ SGPS DF G F+ EGG + +G Sbjct: 174 RNALKQLGVRWQGGGAGDWAVSGPSFGVIGDFKRSGAFLPEGGAAATRGFAVAPRIHPFA 233 Query: 257 ---------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 +++ + + LAEP L+ SG A F +GG+ +S + GA +V Sbjct: 234 TSASMVSSLSSMIDLMVQNGDAAVLAEPRLSTRSGGKARFVAGGELPIPVLS-ANGAANV 292 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 +YGV P V + G I + TEVS V +P R + ++T V L G T Sbjct: 293 DFKEYGVRFEVEPVVNAQGVISASLHTEVSSIDDEVTVMGVPGLRKQSSNTDVNLRPGET 352 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +V+AG++++++ IP L +PILG LFR+ RF + E+E+ + TP L Sbjct: 353 LVIAGMVRNEMSGAITKIPGLGDLPILGHLFRSKRFRQRESEMVVLITPRL 403 >gi|115379230|ref|ZP_01466346.1| type II and III secretion system protein [Stigmatella aurantiaca DW4/3-1] gi|310822227|ref|YP_003954585.1| type II and III secretion system [Stigmatella aurantiaca DW4/3-1] gi|115363762|gb|EAU62881.1| type II and III secretion system protein [Stigmatella aurantiaca DW4/3-1] gi|309395299|gb|ADO72758.1| Type II and III secretion system [Stigmatella aurantiaca DW4/3-1] Length = 485 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 100/443 (22%), Positives = 178/443 (40%), Gaps = 63/443 (14%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 G I++G+ ++ VP + + + DP A+V + + G+ G+ +I+ G Sbjct: 31 GSTIALGVGTQKVITVPG-IARIALGDPNVAEVKNIGNNQVLIIGQTEGKTTLIIWKSSG 89 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 +++ L + +D + +++ + + + V MV D + L G T QD+ R ++ Sbjct: 90 QRVTFLIAVRRQDPNEIISEIKKLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVS 149 Query: 166 TFLSQSGRNQYANSS--------------------------------------------- 180 + + + A ++ Sbjct: 150 LYPNVKSFVKIAPNAKKLVAQNLNAAYQKAGLRNVQANVVGSTIFLEGSVESQQDLQKAE 209 Query: 181 ------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 +KV NLL + + + +V E+RR+ + G ++ S S + + + Sbjct: 210 LITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYPTDISGSATASALISKE 269 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G S++ L F A R LA+P L SG+ A F +GGQ Sbjct: 270 LFPGTFSSGVSSLQ-FLASADFAVGFQA--NDGYGRLLAQPKLVCASGEKAEFLAGGQVP 326 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMP 349 ++ +V YGV+L+ PT G I I+ E SE V + +P Sbjct: 327 IPLIT--NNQFTVEYKPYGVILNLRPTADRSGNIQTEIEAEASEIDTSVAVSIGGSAAVP 384 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R RK T V + G TIVL+G+ D Q+ +P L IPI+G LF+N F+ + E Sbjct: 385 GFRTRKVKTNVTVRHGETIVLSGVFSHDEQKAVSKLPGLGHIPIIGELFKNRAFDSTKRE 444 Query: 410 IFIAATPFLVKPVAMRDLSRPDD 432 + I TP +V P + + + +D Sbjct: 445 LVIFVTPRIVNPDSDKIRTIIED 467 >gi|10956078|ref|NP_052165.1| exporter protein [Chlorobium limicola] gi|1688247|gb|AAB36938.1| exporter protein [Chlorobium limicola] Length = 461 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 100/470 (21%), Positives = 170/470 (36%), Gaps = 88/470 (18%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + L + I + ++ V V DP AD ++ + +YL GK +G N+++ G + + Sbjct: 9 VPLGESRIYRFAQPIKRVAVGDPQVADYIMMNRSEIYLLGKKLGSTNLVVWDQKGN-VTS 67 Query: 112 LDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS- 169 + + R L+ L+ N I ++ + +VL G V ++ + L + Sbjct: 68 TPVQVSRGTTALQAFLKALFPKENDIHIDALGPALVLSGSVSDALVAESVIRLVTAYFGG 127 Query: 170 --------------------------------------------------QSGRNQYANS 179 + Sbjct: 128 SVSKSSPESALIGTDAKALTGVIGELNKSTTASNAESFAFFKKTLMMGDEKGASGSAGRD 187 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S++ V+NLL + QV L+V IA+V R L+ +G D G Sbjct: 188 STRGVINLLKVRDPQQVRLEVRIAQVSRSYLESLGLS----------VTKLTGDLTGSLG 237 Query: 240 SEGGDFSVKGVLD---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 F LD + ++ + A + + ++ LAEPT+ +SG+ F GG+ Sbjct: 238 KLSTGFVSDATLDLLLKPDYDIKMGAKRKPSLLKILAEPTIVTMSGKEGYFLVGGKIYTP 297 Query: 297 T-VSSSTGATSVTTHDYGVVLHFTPT----VLSPG-----RIGLRIQTEVSEPVIGVNAG 346 + V S + T + TPT VL P R+ + Sbjct: 298 SRVESQLDTAKLNTKN-------TPTAWVYVLRPSCWMQAVFHSRLYPRFLNLTRNHSLL 350 Query: 347 DMPSYRVRK----ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + R T VE+ G +V+ GL D++ + +PLL +IPILGALFRN+ Sbjct: 351 GLQKIGHRLNSAPVSTAVEMNEGENLVIGGLKLDNLTNAIDSVPLLGEIPILGALFRNTD 410 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 N E+TE+ + P LVK P D + + FF ++ Sbjct: 411 KNAEKTELMVIVRPTLVKASNTP-PELPTDKFVPPTRGELFFGGKLEGSR 459 >gi|283779187|ref|YP_003369942.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283437640|gb|ADB16082.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 940 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 118/503 (23%), Positives = 205/503 (40%), Gaps = 61/503 (12%) Query: 21 PSVAKLPPIKEANAAVINISDV--EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 ++ + PI A +I I + +++ + + +L+ VD+ V D + D Sbjct: 442 AALVQPEPIGPARVDMIPEGSPFEVIDESGVLTVRVRRSRLLRTKVDIYRTAVVDESICD 501 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHD-GKQMLNLDILIERDIAH----------LEMTL 127 VV +PR + + GK+ G +V D Q L + +E D L+ + Sbjct: 502 VVQFTPREVSIIGKSQGATHVTFWFDDPNSQPLTWLVKVEPDAEEVKKEEQTYKLLQDVI 561 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-----------------------S 164 DS I + +V+ +++ G + +++ + + + + Sbjct: 562 NEMFPDSKIELVVVASKLIVRGQAKDSEEAAQIISIIRAQTGGQGQNGLGGGQNGLGEGA 621 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + ++ S +V+N+L + G QV LKV IAE+ R + G S S Sbjct: 622 AADVLSDSATGNSSRSRLQVINMLRVPGVHQVALKVKIAELNRTAARGFGVDLKTDISFS 681 Query: 225 GPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 K + GG ++ +D + + L++ ++ LAEPTL +SG+ Sbjct: 682 ESEKGSSLLLESILNMAGGQAPALLTQIDGDEIQIGIRYLQQHGVVKLLAEPTLVTLSGR 741 Query: 284 SASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A+F +GG+ TV S G A + +G ++ F PTV+ RI L + E S+ Sbjct: 742 PATFIAGGEFAVPTVVGSAGLNAVTTDFRAFGAIISFMPTVVDKDRIRLEVAPEFSQINQ 801 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +N G P RVR A TTVE+ G T+ +AGLL+D++ + +P L +F Sbjct: 802 DLNVGGTPGLRVRAATTTVEMREGQTLAIAGLLEDNMNGTT-----IGDLPFLAKIFGRR 856 Query: 402 RFNREETEIFIAATPFLVKPVAMRDL-SRPDDHYSVEDDAKAFFFN-------------- 446 R ETE+ I +P LV P+ ++ P + + + F Sbjct: 857 GMQRNETELLILVSPELVHPMEPEEVPPLPGFDVTEPTNGQFFLHGDLEGNPTQDYRSTV 916 Query: 447 --RVNKIYGPKEASEVEGQNYKG 467 R+ K YG S G G Sbjct: 917 WPRLRKRYGSGGPSMTSGPFGHG 939 >gi|194366097|ref|YP_002028707.1| type II and III secretion system protein [Stenotrophomonas maltophilia R551-3] gi|194348901|gb|ACF52024.1| type II and III secretion system protein [Stenotrophomonas maltophilia R551-3] Length = 452 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 108/424 (25%), Positives = 175/424 (41%), Gaps = 44/424 (10%) Query: 62 VPVDVQDVLVSDPTKADVVVH-SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 +P D++ V ++DP AD+V+ R L GK G ++L + + + ++ + Sbjct: 47 LPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHRKQAEPQRMQVRVQSAV 106 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 T + + +L G ++ + + L + G ++ Sbjct: 107 QGAADT-----GSGGLVFTQQDNQGLLQGSTDSVLSHMQEQRTAAMALGKDGTLADTSTI 161 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAA 232 S + + + + + LKQIG + G Sbjct: 162 SSGGVVQVEVKVVE----------FNKTALKQIGISFQNRNGNFAYGFARPGGQLPGNTG 211 Query: 233 DFGGKFVSEGGDFSVKGVLDRF---------SFETVLHALERATAIRTLAEPTLTAISGQ 283 G G+ + + F + + L+ R LAEPTL A+SGQ Sbjct: 212 ILPGMKEGNSGNEAESPISSAFRLVFGSTKGLWNADVDLLQSNGMARVLAEPTLVALSGQ 271 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339 SASF +GG+ G T++T +G+ L TPTVL+P RI L++ E S+ Sbjct: 272 SASFLAGGELPILE-PQGLGTTTITYKPFGIGLTVTPTVLAPNRIALKVAPEASDLDYSN 330 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 I +N +PS R+ADTTVEL G + V+ GL+ ++ IPLL +PI+G+ FR Sbjct: 331 AIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSSVGKIPLLGDLPIIGSFFR 390 Query: 400 NSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 N + R++ E+ I TP LVKP+A +L P D +AK + GP Sbjct: 391 NFDYKRQDKELVIIVTPRLVKPLARNTELPLPGDR-----EAKPHMPEWGAWLLGPISQD 445 Query: 459 EVEG 462 V G Sbjct: 446 PVPG 449 >gi|70734199|ref|YP_257839.1| type II/III secretion system protein [Pseudomonas fluorescens Pf-5] gi|68348498|gb|AAY96104.1| bacterial type II/III secretion system protein [Pseudomonas fluorescens Pf-5] Length = 417 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 111/447 (24%), Positives = 182/447 (40%), Gaps = 53/447 (11%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 M +F S+ L + AAV S + + IG LQ V + + V Sbjct: 6 MPLFSALLTLSLGPLLCTQALAAAVAGCSSLAPLPA-ALEIGEGLQQELQSAVAITRLAV 64 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 DP ADV + L G G ++++ + ++ R Sbjct: 65 GDPKIADVQTTGNKAFLLTGMAPGATSLMVWTACASTPRQSMVFVQG---------RATA 115 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 S R+ D ++ +Q R VE+S T L ++ + + + L Sbjct: 116 DMSTGRLPASDDPLL----PSQVQTDIRFVEVSRTKLKEASVSIFGRGHN----FLFGAP 167 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV- 250 G VT G S S FGG+ + D + Sbjct: 168 GTAPVT--------------------------GGTSGSVTPTFGGRRTNIPLDNGTFNIG 201 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 T+++ALE + TLA P+L A+SGQSASF +GG+ S+ + + ++ Sbjct: 202 FGNGRVLTLINALEGSGFAYTLARPSLVALSGQSASFLAGGEIPIPVPSTGSNSVTIEYK 261 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGG 366 ++G+ L TPT++ GRI L++ EVSE + + +P+ VR+ DT++ L G Sbjct: 262 EFGIRLTLTPTIVDRGRISLKVAPEVSELDYSNAVTIAGTQVPALTVRRTDTSISLADGE 321 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + V++GL+ + P L IP+LGA FR++ NREE E+ + TP LV+P+A Sbjct: 322 SFVISGLISTNNSSQVNKFPGLGDIPVLGAFFRDTTINREERELLMVVTPHLVQPLAADA 381 Query: 427 --LSRPDDHYS--VEDDAKAFFFNRVN 449 + P + + + FF N Sbjct: 382 KLPALPGERLRNYDPNFYRMFFLENGN 408 >gi|283778969|ref|YP_003369724.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283437422|gb|ADB15864.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 684 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 106/494 (21%), Positives = 188/494 (38%), Gaps = 67/494 (13%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82 +A P E + +I + + L + IL + + + D + A V Sbjct: 138 MANPVPTAEVSQRFDRFIQRKIDPENTLEVILGRPRILVFNETPKRIYLPDESIAAFQVI 197 Query: 83 SPRTMYLFGKNVGQANVILI----GHDGKQMLNLDILI----------ERDIAHLEMTLR 128 R + + G++VG + L + +L+ + + E A LE + Sbjct: 198 DDRQISIVGRSVGSTALNLWVIDPETGKEIVLSYLVKVLPEPQLKERLEAVYAGLEREIN 257 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS--------- 179 + S I++ ++ D + + G ++ + +++ ++++ Sbjct: 258 QAFPRSKIQLSLIGDQLAVRGQAHDAVEANQILQIVARHSPTKSQDEFGRPVQYVQQAAF 317 Query: 180 --------------------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + ++NLL I GE QV L+VT+AEV R + I Sbjct: 318 IDQQRDPLVDQDQAFLRQTVVDSALLARSGIINLLQIPGEQQVMLRVTVAEVNRTAARSI 377 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDF--SVKGVLDRFSFETVLHALERATAIRT 271 G S+ + + + G+ + GG +V LD ++AL +T Sbjct: 378 GLNFSVQNNQG---TTVFQNLTGQLGAAGGGNLSNVLASLDNGQVILAINALRSLRLAKT 434 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 LAEP LT ++GQ A+F +GG + TG +GV + FTP V+ RI Sbjct: 435 LAEPNLTTLNGQQATFRAGGSFPVPQIGGLGGTGLQGTVFVPFGVSIEFTPYVIDRDRIR 494 Query: 330 LRIQTEVSEPVIGVNA----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 L++ VS + + R D+TVEL G T+ +AGL++ ++ Sbjct: 495 LKLSAGVSVRDESLGTSIGGSAGAGGTQVAGLNSRTFDSTVELREGQTLAVAGLIQTNMG 554 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD-LSRPDDHYSVED 438 + +P +PI+G SR E E+ I TP LV P+ D S P Sbjct: 555 ADSDRVPFWGDLPIIGHTGGFSRTTAGEQELVILVTPELVHPLEACDTPSLPGADVFETG 614 Query: 439 DAKAFFFNRVNKIY 452 D + + N + Sbjct: 615 DIEFYLGNHLEARR 628 >gi|170725113|ref|YP_001759139.1| type II and III secretion system protein [Shewanella woodyi ATCC 51908] gi|169810460|gb|ACA85044.1| type II and III secretion system protein [Shewanella woodyi ATCC 51908] Length = 436 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 97/408 (23%), Positives = 174/408 (42%), Gaps = 44/408 (10%) Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHL 123 +V+ ++V + V + + L ++ G +V L DGK + L++ + + + Sbjct: 42 NVERIVVGNGKVLSAKVIDDKGVLLIAESPGNTDVQLWQKDGKLIKLSISVTPDNSLKTT 101 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + A +I+V +++ G LSQ + + + Sbjct: 102 DTIKKMLAAFPSIKVTENDGLIIVQGEAD---------------LSQKEQLETIIEADPN 146 Query: 184 VMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGG 236 V++L+ + ++V I E + L IG + S+ G + G +K+F+A+ Sbjct: 147 VVSLIKYLKFAKTMAPMIKMQVKIVEFNKSTLNNIGIKWESSMAGPAYGAAKAFSANPIF 206 Query: 237 KFVSEG--------GDFSVKGVLDRFSFE---------TVLHALERATAIRTLAEPTLTA 279 S G GVLD + + + L R LAEP LT Sbjct: 207 SVSSPGQYSETITSAITDSIGVLDTRGWNYFGIVTGIGSQIQLLSEKGDARMLAEPNLTT 266 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 SG+SA+F +GG+ ++VS GA V +YG+ L P V I R+ EVS Sbjct: 267 RSGESANFLAGGEFPIRSVSG-LGAVDVEYKEYGIKLDIEPVVDDDLNIVSRVMAEVSSI 325 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V +P R+ ++ + + + TIV++GL+ ++ ++ PLL IPILG LF+ Sbjct: 326 DPSVAVDGIPGMLTRRTESVINVKNNETIVISGLVNSEMSKIVNKFPLLGDIPILGELFK 385 Query: 400 NSRFNREETEIFIAATPFLVKPVAM---RDLSRPDDHYSVEDDAKAFF 444 + F ++E+ I TP +V P + L R + + +AF+ Sbjct: 386 SRDFKDNKSELVIFVTPTVVYPGEESHDKQLERGLEMAEETNKLEAFY 433 >gi|283781350|ref|YP_003372105.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283439803|gb|ADB18245.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 940 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 118/503 (23%), Positives = 205/503 (40%), Gaps = 61/503 (12%) Query: 21 PSVAKLPPIKEANAAVINISDV--EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 ++ + PI A +I I + +++ + + +L+ VD+ V D + D Sbjct: 442 AALVQPEPIGPARVDMIPEGSPFEVIDESGVLTVRVRRSRLLRTKVDIYRTAVVDESICD 501 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHD-GKQMLNLDILIERDIAH----------LEMTL 127 VV +PR + + GK+ G +V D Q L + +E D L+ + Sbjct: 502 VVQFTPREVSIIGKSQGATHVTFWFDDPNSQPLTWLVKVEPDAEEVKKEEQTYKLLQDVI 561 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-----------------------S 164 DS I + +V+ +++ G + +++ + + + + Sbjct: 562 NEMFPDSKIELVVVASKLIVRGQAKDSEEAAQIISIIRAQTGGQGQNGLGGGQNGLGEGA 621 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + ++ S +V+N+L + G QV LKV IAE+ R + G S S Sbjct: 622 AADVLSDSATGNSSRSRLQVINMLRVPGVHQVALKVKIAELNRTAARGFGVDLKTDISFS 681 Query: 225 GPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 K + GG ++ +D + + L++ ++ LAEPTL +SG+ Sbjct: 682 ESEKGSSLLLESILNMAGGQAPALLTQIDGDEIQIGIRYLQQHGVVKLLAEPTLVTLSGR 741 Query: 284 SASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A+F +GG+ TV S G A + +G ++ F PTV+ RI L + E S+ Sbjct: 742 PATFIAGGEFAVPTVVGSAGLNAVTTDFRAFGAIISFMPTVVDKDRIRLEVAPEFSQINQ 801 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +N G P RVR A TTVE+ G T+ +AGLL+D++ + +P L +F Sbjct: 802 DLNVGGTPGLRVRAATTTVEMREGQTLAIAGLLEDNMNGTT-----IGDLPFLAKIFGRR 856 Query: 402 RFNREETEIFIAATPFLVKPVAMRDL-SRPDDHYSVEDDAKAFFFN-------------- 446 R ETE+ I +P LV P+ ++ P + + + F Sbjct: 857 GMQRNETELLILVSPELVHPMEPEEVPPLPGFDVTEPTNGQFFLHGDLEGNPTQDYRSTV 916 Query: 447 --RVNKIYGPKEASEVEGQNYKG 467 R+ K YG S G G Sbjct: 917 WPRLRKRYGSGGPSMTSGPFGHG 939 >gi|238759122|ref|ZP_04620291.1| Type II/III secretion system protein [Yersinia aldovae ATCC 35236] gi|238702670|gb|EEP95218.1| Type II/III secretion system protein [Yersinia aldovae ATCC 35236] Length = 354 Score = 233 bits (594), Expect = 6e-59, Method: Composition-based stats. Identities = 100/380 (26%), Positives = 175/380 (46%), Gaps = 35/380 (9%) Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + + + M+ +L+ I + ++ DSNI + + D+ +L G + + Sbjct: 1 MFNRNNQPMIKTVVLVNNIINLVYQRIKVEYPDSNIEINKIGDSYILTGQAESEEAKDTI 60 Query: 161 VELSETFLSQSG----RNQYANSSSK-KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 + ++ ++QY N+ + ++N + + +QV +K+TIAEV +D + IG Sbjct: 61 ASMVGEAVNNRREIKHKDQYLNNHNYLGIINKIKLPRPNQVNVKLTIAEVTKDFSENIGI 120 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 S G S G + + G T++HA+ + R LAEP Sbjct: 121 DWSSIGESVGSFQFLKFNASG-------------------ISTLVHAINDDSIARILAEP 161 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L+ +SG+SASF GG+ + + +T + YG+ L + V +I +++ E Sbjct: 162 NLSVLSGESASFLVGGEIPLYNTTQN--STIIKYKPYGIKLSISAKVNEHSKIRIKVDEE 219 Query: 336 VSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 VS N P+ RKA TT+EL G + +L GL+ ++ + IP + IP Sbjct: 220 VSNIGKRFNVEGGNAYPTLETRKAATTLELADGESFILGGLITKSERESLKKIPFIGDIP 279 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 ILGA FRN++ ++TE+ + AT LVKP+A ++ P D + + F F R+ ++ Sbjct: 280 ILGAFFRNAQTENKQTELVVVATVSLVKPLAGTEVELP-DFMNTSTLERLFNFTRIIEVK 338 Query: 453 GPKEASEVEGQNYKGAIGFI 472 K A E + GFI Sbjct: 339 RKKVAKEFLRKG-----GFI 353 >gi|73539231|ref|YP_299598.1| type II and III secretion system protein [Ralstonia eutropha JMP134] gi|72122568|gb|AAZ64754.1| type II and III secretion system protein [Ralstonia eutropha JMP134] Length = 469 Score = 233 bits (593), Expect = 7e-59, Method: Composition-based stats. Identities = 97/427 (22%), Positives = 169/427 (39%), Gaps = 50/427 (11%) Query: 23 VAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81 +A + A+ + E + + ++ ++ V V +P AD ++ Sbjct: 25 LAAMLATAMLVTAIPRATAQEAAPAPSTLRLMAGAQKEIRPAQPIERVAVGNPAVADALL 84 Query: 82 HSPRT----MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 R+ + + K G ++++ G + ++ +NI Sbjct: 85 IKQRSGPPGVLVVAKQPGVTDLMIW-PRGAAQQTYTVQVDAITPDT--------GGANIA 135 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V T+ G R + + V++ + + V Sbjct: 136 YSAVGATI--TGQSRDA----------YAAARAQTAARVGSGKGGVVVDRSTVPVSNTVQ 183 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----- 252 + V + E+ + +LK++G +S SF+ KF G G Sbjct: 184 VDVKVVEISKTVLKEVGINF-FRNNSGFAFGSFSPSTLSKFTFTPGTGGANGSFSADITT 242 Query: 253 -------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 F + LE R LAEP+L A+SGQSASF SGG+ V Sbjct: 243 PISNAFNLVAASLSHGFFANISLLEANGLARVLAEPSLVALSGQSASFLSGGEIPIP-VP 301 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRK 355 + G T++ +G+ L +PTVLS RI L++ E S+ I +N +P+ R+ Sbjct: 302 QALGTTTIQFKPFGIGLTVSPTVLSDQRIALKVAPEASDLDPSRGIAINGAIVPAIVTRR 361 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ADTT+EL G + V+ GL+ + +P L +P++G F+N F++E+ E+ I T Sbjct: 362 ADTTIELGDGESFVIGGLVSRNTVSNVNKVPFLGDLPVIGPFFKNLNFHQEDRELMIVVT 421 Query: 416 PFLVKPV 422 P LVKP+ Sbjct: 422 PRLVKPL 428 >gi|304311185|ref|YP_003810783.1| Probable outer membrane channel protein [gamma proteobacterium HdN1] gi|301796918|emb|CBL45131.1| Probable outer membrane channel protein [gamma proteobacterium HdN1] Length = 470 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 97/434 (22%), Positives = 168/434 (38%), Gaps = 33/434 (7%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 R + ++ F + + + A P V G ISI + +L P Sbjct: 33 TRIWLAFITAFFWCATHANAAEP--------------VPPGYDDVISIVQGQTTLLPFP- 77 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ-MLNLDILIERDIAHL 123 +V V + + A+ + L G G ++ + GK L I+ L Sbjct: 78 NVVRVSIGEENLANAQPAGANEILLTGLKAGVTDLRIWPEHGKAKRYLLKIIDNTWTRVL 137 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 E++ + + V++ G + QD+ +L + + + Sbjct: 138 ELSNTVLADIEGVSAREDNGIVLIEGRLLREQDAAVIADLKAKLKKEVKEGKVVFN---- 193 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----------ITGSSSGPSKSFAA 232 + L N+ V L V + EVR+ LK++G Q +G + + Sbjct: 194 -VVLPNVKLAAMVMLDVHVVEVRKQDLKKLGVQWDSATAGPAYGVLGQFRGAGNFEKDTS 252 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 FG V S + L+ L+ LA+P L SG ASF +GG+ Sbjct: 253 VFGFLMTENRSPIKVGNGYIGTSIGSKLNFLQSNGVAHVLAQPKLVTRSGSEASFLAGGE 312 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 TV+ ++ GV+L +P G I I EVS+ V +P + Sbjct: 313 IPIPTVTKDNQINTI-FKQVGVILKISPKADPDGFIETAINVEVSQVDASVQVLGIPGFI 371 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 RK + + SG T+ ++G+L ++ + + +P L IPILG LF++ F + TE+ I Sbjct: 372 TRKTKMEMNVQSGQTMAISGMLSEESSKAIDKMPGLGSIPILGELFKSRDFRQNTTELMI 431 Query: 413 AATPFLVKPVAMRD 426 TP+LV P + ++ Sbjct: 432 FVTPYLVDPDSEQN 445 >gi|238796996|ref|ZP_04640500.1| Type II/III secretion system protein [Yersinia mollaretii ATCC 43969] gi|238719256|gb|EEQ11068.1| Type II/III secretion system protein [Yersinia mollaretii ATCC 43969] Length = 340 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 99/338 (29%), Positives = 170/338 (50%), Gaps = 31/338 (9%) Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS----Q 170 ++ I + DS+I ++ + D+ +L G V + ++ L + + Sbjct: 1 MVNDIINATNKRIIAEYPDSHIEIDKIGDSYILTGEVESEEEKDTIATLVGEAIGSKKEE 60 Query: 171 SGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 SG+ QY N+ ++N + + +QV +K+TIAEV +D + +G S G + G + Sbjct: 61 SGKGQYFNTPYYSNIINKIKLPQSNQVNVKLTIAEVTKDFSENVGVDWSTAGDAVGSFQF 120 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 F+ KG+ T++HA+ + R LAEP L+ +SG+SASF Sbjct: 121 I-------------RFNAKGI------STLVHAINDDSIARILAEPNLSVLSGESASFLV 161 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AG 346 GG+ +S++ + +V+ ++G+ L+ V RI + I EVS N Sbjct: 162 GGEIPI--ISTTENSRTVSYKEFGIKLNIGAKVNEKKRIRIHINEEVSSIGKTFNIEGGD 219 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +PS R RKA+TT+EL G + +L GL+ ++ + IPL+ IPILGALFRN++ + Sbjct: 220 SIPSLRTRKAETTLELGDGESFILGGLISHTERESLKKIPLIGDIPILGALFRNAQTEQN 279 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +TE+ + AT LVK V+ +++ PD + + FF Sbjct: 280 QTELVVIATVNLVKSVSKKEVELPD--FMHTSTLERFF 315 >gi|237653358|ref|YP_002889672.1| type II and III secretion system protein [Thauera sp. MZ1T] gi|237624605|gb|ACR01295.1| type II and III secretion system protein [Thauera sp. MZ1T] Length = 479 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 103/441 (23%), Positives = 185/441 (41%), Gaps = 43/441 (9%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 +R ++ L P ++ P A + + + +I + + +L Sbjct: 13 RRALPPLVCAILILGLPGPSRAAPPASAAPPEPGRAALAV--VHEIQMFAGETRVLP-QR 69 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER-DIAHL 123 D Q + V D V R + L G + + G+ + I + + D A + Sbjct: 70 DAQRLAVGDAKVLSAAVLDDREILLIANGPGDTMLQVWTRSGRS-QRIKITVRQTDTARI 128 Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L+ F+ D +R + D VV+ G + + + EL++ F Sbjct: 129 ARDLQGFLHDVPRLRTRTIGDNVVIEGEGLSDAERDKVTELAKRF--------------P 174 Query: 183 KVMNLLNIAGEDQV-TLKVTIAEVRRDILKQIGFQHSITG-------------SSSGPSK 228 ++++ + G D++ V E+ R L+ +G + G + Sbjct: 175 QLIDFTSRVGLDRMFAFDVRFVEISRSGLRDLGIDWTTQGKPLLGIGVIGDLYHDNRTGA 234 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDR-------FSFETVLHALERATAIRTLAEPTLTAIS 281 + G +S + V SF L+ L + LA P L+A + Sbjct: 235 TVTRTLGSGELSSEVEIEANRVSPFAANVALVGSFFGRLNLLAQKGDAVILASPRLSARN 294 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPV 340 ASF +GG+ V+S+TG SVT +YG+ L+ P + G I RI+TEVS Sbjct: 295 RGEASFLAGGEIPVP-VASATGTPSVTFKEYGIRLNILEPVADAAGTIRARIRTEVSSLD 353 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 V A +P R+ +T L +G T+VL+G+L+ + Q + +P L ++P++G LFR+ Sbjct: 354 RSVAAQGVPGLLSRRTETEFNLRNGETLVLSGVLQREQQSDENALPHLGELPVIGRLFRS 413 Query: 401 SRFNREETEIFIAATPFLVKP 421 +RFN E+E+ + TP+L++P Sbjct: 414 TRFNSRESELVVFVTPWLLEP 434 >gi|119773845|ref|YP_926585.1| putative type II and III secretion system outermembrane protein, secretin [Shewanella amazonensis SB2B] gi|119766345|gb|ABL98915.1| putative type II and III secretion system outermembrane protein, secretin [Shewanella amazonensis SB2B] Length = 423 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 102/408 (25%), Positives = 181/408 (44%), Gaps = 41/408 (10%) Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 +V+ V+V + V + + L G++ G +++ L DG + L +++ ++ A Sbjct: 27 ANVERVVVGNGGVLSAKVLDEKNVILIGESEGLSDIQLWQKDG-TVRKLSVVVTKENAQT 85 Query: 124 E-MTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDS--QRAVELSETFLSQSGRNQYANS 179 T++R +A+ +I V +V+HG Q ++ ++ + L +Y S Sbjct: 86 TVGTMKRMLAEFPSIEVTESDGVIVIHGEADASQRETLEKVLDGKDNILPLIKYVKYGKS 145 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAAD---- 233 E V ++V I E + L IG Q ++G + G +K+F A+ Sbjct: 146 I------------EPMVKMEVKIVEFNKSTLNNIGVQWENVMSGPAFGAAKAFTANPIFS 193 Query: 234 ----------FGGKFVSEGGDFSVKG---VLDRFSFETVLHALERATAIRTLAEPTLTAI 280 GG G +G + + L R LAEP LT Sbjct: 194 VSSPGQYANSIGGAVSDAIGVLDTRGWSYFGIVTGIGSQIQLLAEKGDARMLAEPNLTTR 253 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 SG++ASF +GG+ +TVS G+ + +YG+ L+ P V + I R+ EVS Sbjct: 254 SGEAASFLAGGEIPIRTVSG-VGSVDIQYKEYGIRLNIEPVVDADNNIVSRVMAEVSAVD 312 Query: 341 IGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + G P + R+ ++ + + + T+V++GL+ ++ ++ PLL IPILG LF+ Sbjct: 313 PSIQLEGSAPGFLTRRTESVINVKNKQTMVISGLVNSEMSKVVNKFPLLGDIPILGELFK 372 Query: 400 NSRFNREETEIFIAATPFLVKPVA---MRDLSRPDDHYSVEDDAKAFF 444 + F E+TE+ I TP +V P + LSR + +AF+ Sbjct: 373 SRNFREEKTELVIFVTPTVVYPGEDSHEKSLSRARELVDDAAKLEAFY 420 >gi|33593509|ref|NP_881153.1| putative secretory apparatus [Bordetella pertussis Tohama I] gi|33572865|emb|CAE42800.1| putative secretory apparatus [Bordetella pertussis Tohama I] gi|332382917|gb|AEE67764.1| putative secretory apparatus [Bordetella pertussis CS] Length = 470 Score = 230 bits (586), Expect = 5e-58, Method: Composition-based stats. Identities = 105/433 (24%), Positives = 174/433 (40%), Gaps = 44/433 (10%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 R +++ P PP A AV+ + E+G+ + ++ Sbjct: 12 RGWLPWMAVLLAGGTMLWTPGGRAAPP---AQPAVLRM---EVGETQVLA---------- 55 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI-GHDGKQMLNLDILIERDI 120 V V V + V + LF + G ++V + G +Q +++L Sbjct: 56 -AAGVTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVL-PAGR 113 Query: 121 AHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 L + +A R V +V+ G + D R L++ + Sbjct: 114 RRLREEVAALLARIPRARSSAVGAHIVIEGSQLSEDDHARIAALAQRY------------ 161 Query: 180 SSKKVMNLLNIAGED-QVTLKVTIAEVRRDILKQIGFQH---SITGSSSG----PSKSFA 231 +V++ G D V L V + E+ R L+++G + ++ G +G S + Sbjct: 162 --PEVLDFTGRVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAVGGVHAGAVWNGSSAAL 219 Query: 232 ADFGGKFVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A G G+L L AL + LA+P L A SG +ASF +G Sbjct: 220 APPPGPLAGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAG 279 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 G+ Y+T T++ YGV L TP + + G + RI+ E S + P+ Sbjct: 280 GELPYRTTDKEGNGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPA 338 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R R+A T + SG T+VL G L + ++G+P LS++P++GALF R ETE+ Sbjct: 339 LRKRRAVTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETEL 398 Query: 411 FIAATPFLVKPVA 423 I TP +V P Sbjct: 399 AIFVTPTIVSPSD 411 >gi|221066739|ref|ZP_03542844.1| type II and III secretion system protein [Comamonas testosteroni KF-1] gi|220711762|gb|EED67130.1| type II and III secretion system protein [Comamonas testosteroni KF-1] Length = 467 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 100/456 (21%), Positives = 166/456 (36%), Gaps = 74/456 (16%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEI----GKGKKISIGLNKVIILQVPV 64 FT + + + + A + A A + V + G + + + +L + Sbjct: 7 FTALGLASSAILSTFATSAMAQTAAADNVRAGVVSVATPTGAASPLPLTMGSQHVLLPAM 66 Query: 65 DVQDVLVSDPTKADVVVHSPR------TMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 + + V DP DV V + L K G + + G + + + Sbjct: 67 PLARLAVGDPNVLDVKVLRSTGNSSAPELLLTPKAPGSTTLSIWSTRG-LSQSWQVEVSS 125 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 L+ L A+EL+ L + + Sbjct: 126 PSLLLKKNLDSV--------------------------HDHALELASLRLKAAKDTALLD 159 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------- 231 S V + V + V + E ++ LK+ G +G S+ SF Sbjct: 160 RSQISVRSNT-------VQVDVQVVEFKKTALKRAGINL-FSGGSNNHGFSFGMYTPGAS 211 Query: 232 ------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 + L LE R LA Sbjct: 212 SSSGSGSSSGGSGDGGASGGSTALSSAMNLVLGFSKAFSGAGISAQLGFLEGNGLARVLA 271 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 +PTL A +GQSASF +GG+ S+S+ S+ ++GV L TPTVLS RI L++ Sbjct: 272 KPTLVAHTGQSASFLAGGEIPIPVPSTSSNNISIRYKEFGVKLQLTPTVLSNERIALKVA 331 Query: 334 TEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 E S+ + + +P+ R+ADT VEL G + V+ GL+ +PLL Sbjct: 332 PEASDLDYTSGVTIAGVAVPAIATRRADTMVELADGESFVIGGLVSRSTSSSVNKVPLLG 391 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +PILG F+N ++++E E+ I TP LV+P+ ++ Sbjct: 392 DLPILGPFFKNLNYSQDEKELVIIVTPRLVQPLPVQ 427 >gi|170720034|ref|YP_001747722.1| type II and III secretion system protein [Pseudomonas putida W619] gi|169758037|gb|ACA71353.1| type II and III secretion system protein [Pseudomonas putida W619] Length = 419 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 100/458 (21%), Positives = 180/458 (39%), Gaps = 63/458 (13%) Query: 2 RYLQRTFFTMMSIFLF--SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII 59 R + FF++ + L + P+ EA A + ++ +++ G +++ Sbjct: 6 RCSSKRFFSLACLALLTVALLPNAHGASKGCEAFAQLPSVIEIDQGLQQEL--------- 56 Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 ++P+ + V DP ADV R + + G ++L + + + Sbjct: 57 -RLPLAITRAAVGDPKVADVQPSGDRAVLVTAVGQGNTTLMLWTACAPGPHRAMLFV-KG 114 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 A M + + +Q R VE+ T ++G + + Sbjct: 115 QASAAMAETGLPPSLDPEL------------PSQVQADIRFVEVRRTKYKEAGARLFFSG 162 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S+ ++ VT V + Sbjct: 163 SNNSLIGSPGTVPGTSVTPGA--VPVT----------------------------SPQIP 192 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G F++ F ++ALE + TLA P+LT +SG +ASF +GG+ S Sbjct: 193 LNNGVFNIVWGGGSSRFLAAINALENSGFAYTLARPSLTVLSGLTASFLAGGEIPIPVPS 252 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRK 355 + + S+ ++GV L TPTV+S RI L++ EVSE + + +P +R+ Sbjct: 253 AGSDNFSIEYKEFGVRLALTPTVISRDRITLKVAPEVSELDYTNAVTIGGTSVPGLSIRR 312 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 DT++ L G + +++GL+ ++ + + +P L +PILGA FR S REETE+ + T Sbjct: 313 TDTSISLADGESFIISGLVGNNTRSAVDKLPGLGNLPILGAFFRQSALVREETELLMIVT 372 Query: 416 PFLVKPVAMR----DLSRPDDHYSVEDDAKAFFFNRVN 449 P LV+P+A +L + FF N Sbjct: 373 PHLVQPLAANARLPELPGEGLRTYDPSWGRLFFMENGN 410 >gi|331092898|ref|ZP_04586842.2| type II and III secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021233|gb|EGI01290.1| type II and III secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 416 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 104/427 (24%), Positives = 173/427 (40%), Gaps = 54/427 (12%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A AA + + + I I +Q PV + + V DP ADV V + L G Sbjct: 26 AWAASGSCNGLAAMPA-AIEIDQGIQQNVQSPVAITRIAVGDPKVADVHVSNSDGFLLTG 84 Query: 92 KNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G ++++ + + R A + TL D+N+ Sbjct: 85 VAQGTTSLMVWTACSSAPRQSMVFVRGRASASMVETLAAPSTDANL-------------- 130 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 +Q R +E+S T L ++ + + S+ + VT Sbjct: 131 PSQVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTP------------ 178 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 G+ SG S + +F++ +L+A+E + Sbjct: 179 ----------GTVSGTRPSIPLN--------NSNFNIVWGGGSSKVLGMLNAMENSGYAY 220 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 TLA P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L Sbjct: 221 TLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILL 280 Query: 331 RIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 ++ EVSE I ++ +P+ +R+ DT++ L G + V++GL+ + P Sbjct: 281 KVAPEVSELDFSAGITISGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFP 340 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP--VAMRDLSRPDDHYS--VEDDAKA 442 L IPILGA FR+S+ R+E E+ + TP LV+P V R S P + + Sbjct: 341 GLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAVDARLPSLPGESLRNYDPSFPRL 400 Query: 443 FFFNRVN 449 +F + Sbjct: 401 YFLENGD 407 >gi|104779900|ref|YP_606398.1| type II/IV secretion system protein D [Pseudomonas entomophila L48] gi|95108887|emb|CAK13583.1| Putative type II/IV secretion system protein D [Pseudomonas entomophila L48] Length = 426 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 101/444 (22%), Positives = 183/444 (41%), Gaps = 49/444 (11%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 + + + L P A + + +++ G +++ ++PV + Sbjct: 10 WLCLVVPLMLLMPQALATGKGCAAFDQMPTVIEMDQGLQQEL----------RLPVAITR 59 Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTL 127 V V +P ADV R + L G G +++L + + I R A + Sbjct: 60 VAVGEPKVADVQASGERAVLLTGVGQGNTSLMLWTDCAPKPHRAMVFIKGRASADMAEVA 119 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + + + ++ +D +R ++ + + + L G N S V N Sbjct: 120 LQATEQAPLPTQVQAD-------IRFVEVRRLKYKEAGAKLFFKGSNNSLFGSPGTVPNT 172 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 + G + G +G + AD + F++ Sbjct: 173 VVRPG-------------------------YVPGIQTGTNPVTYADVRPGIPLDNDVFNI 207 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 F +++ALE + TLA P+LT +SG +ASF +GG+ SS + S+ Sbjct: 208 VWGGGSSRFLAMINALENSGFAYTLARPSLTVLSGLTASFLAGGEIPIPVPSSGSDNVSI 267 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELP 363 ++GV L TPTV+S RI L++ EVSE + +P VR+ DT++ L Sbjct: 268 EYKEFGVRLALTPTVVSGNRINLKVAPEVSELDYNNAVVIAGTRVPGLSVRRTDTSITLA 327 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G + +++GL+ +++ + +P L +PI+GA FR + NREETE+ + TP LV+P+A Sbjct: 328 DGESFIISGLITSNVRSGVDKMPGLGNLPIIGAFFRQTALNREETELLMIVTPHLVQPLA 387 Query: 424 MRD--LSRPDDHYSVEDDAKAFFF 445 + P + D + F Sbjct: 388 VNAKLPELPGEGLRTYDPSWGHLF 411 >gi|163856388|ref|YP_001630686.1| putative outer membrane protein [Bordetella petrii DSM 12804] gi|163260116|emb|CAP42417.1| putative outer membrane protein [Bordetella petrii] Length = 458 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 96/382 (25%), Positives = 167/382 (43%), Gaps = 29/382 (7%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ + + +L+ +V V V + V R + LF + G ++V + G Sbjct: 30 LTLEVGQTRVLRH-AEVTRVAVGNGQVVSAVSVDGREVVLFARQEGASSVHVWAPRG-VA 87 Query: 110 LNLDILIER-DIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 ++ + A ++ ++ + N+R +V VVL G D R L++ + Sbjct: 88 AAYEVQVRPAGWALIQEEVQTLLRHIPNVRSSVVGGNVVLEGDDLADDDRARVAALAQRY 147 Query: 168 LSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSS 223 ++++ + ++ V L V + E+ L++ G Q S G Sbjct: 148 --------------PRILDFTGQVGWDNMVLLDVQVVEIPSARLREFGLQWDALSQGGLH 193 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET------VLHALERATAIRTLAEPTL 277 +G + ++ S++G+ F L AL + LA+P L Sbjct: 194 AGGVWQPGSSLQLADAAQPPALSMQGMGAAGYFGVNALLSARLAALAQRGEAVMLAQPQL 253 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A SG +ASF +GG+ Y T + + G +S YGV L+ TP + G I RI+ E S Sbjct: 254 LARSGTTASFLAGGEVPYST-TDAQGNSSTEFKPYGVSLNITPRIDRNGAIRSRIEVEAS 312 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 ++ P+ R R+A T + SG T+VL G L + + G+P+L IP+LGAL Sbjct: 313 SIDTSLSVAGGPALRTRRAVTEFNVRSGQTLVLGGFLSRERSHERSGLPVLQDIPLLGAL 372 Query: 398 FRNSRFNREETEIFIAATPFLV 419 F + R +ETE+ I TP +V Sbjct: 373 FSSRRDQHKETELAIFVTPRIV 394 >gi|160897515|ref|YP_001563097.1| type II and III secretion system protein [Delftia acidovorans SPH-1] gi|160363099|gb|ABX34712.1| type II and III secretion system protein [Delftia acidovorans SPH-1] Length = 492 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 92/473 (19%), Positives = 176/473 (37%), Gaps = 44/473 (9%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 LQR +T+ + P P + ++ G + + + ++ + Sbjct: 14 LQRAVWTLCGSMALLALPPAVSAPADTAGVQGMHAPGAGDMPSGDSLQLVAGRQHLMPLA 73 Query: 64 VDVQDVLVSDPTKADVVVH----------SPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 + V DP DV + + L K G +++ G + Sbjct: 74 STPGRIAVGDPNVLDVKLLRATPGSGAGAGGTELLLTPKAQGSTTLVVWPQKGGAPQRWE 133 Query: 114 ILIE-------------RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + + + A LR++ + V+ + T+Q + Sbjct: 134 VQVRGQHLLLEKRLTSVPEHAQAVAELRQYAPAQTLLVDNAQ----IDVKSNTVQVDVQV 189 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 VE ++ + + G N Y+ + + + + + + + + + Sbjct: 190 VEFKKSAMKRIGVNIYSGGRNNQGFSFGSFSPG-------VVGSISTNTNGTGTGTGTGN 242 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDF--SVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G ++ ++ + T L LE R LA PTL Sbjct: 243 TGTGGTGSGGVSNNTSSAIASAMSLVMTFGKAFSGAGIVTQLSILEGNGMARVLARPTLL 302 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS- 337 A +GQ+ASF +GG+ V + G ++ ++G+ L TPT+LS RI L++ E S Sbjct: 303 AQTGQNASFLAGGELPIP-VPARDGNIAIQYKEFGIKLQLTPTILSDDRIALKVSPEASD 361 Query: 338 ---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + ++ +P+ R R+ADT+VEL G + V+ GL+ +P+L +PIL Sbjct: 362 LDFNSGVTISGVTVPAIRTRRADTSVELADGESFVIGGLVSRATTSNVSKVPVLGDLPIL 421 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMR---DLSRPDDHYSVEDDAKAFF 444 G F+N + +EE+E+ I TP LV P+ + P + K + Sbjct: 422 GTFFKNLNYTQEESELVIIVTPRLVHPLPASTNLEALLPGAQSEQRNAGKVWL 474 >gi|330959995|gb|EGH60255.1| type II and III secretion system protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 416 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 94/421 (22%), Positives = 161/421 (38%), Gaps = 54/421 (12%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 AA + S + + I + PV + + V DP ADV V L G Sbjct: 28 AAPGSCSTLAAMPA-AVEIDQGIQQNISSPVAITRIAVGDPKIADVHVSGNDGFLLTGVA 86 Query: 94 VGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G ++++ + + R A + T D+ + Sbjct: 87 QGTTSLMVWTACSSAPRQSMVFVRGRATASMVETASAPSGDAQL--------------PS 132 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 +Q R VE+S + L ++ + + S+ + V Sbjct: 133 QVQTDIRFVEVSRSKLKEASTSIFGKGSNNFLFGAPGTVPGVNV---------------- 176 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 + + +F++ +L+A+E + TL Sbjct: 177 --------------TPGTVSATKPNIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYTL 222 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L++ Sbjct: 223 ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 282 Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 EVSE I + +P+ +R+ DT++ L G + V++GL+ + P L Sbjct: 283 APEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGL 342 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFF 444 IPILGA FR+S+ R+E E+ + TP LV+P+A S P + + +F Sbjct: 343 GDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRNYDPSFPRLYF 402 Query: 445 F 445 Sbjct: 403 L 403 >gi|320322730|gb|EFW78823.1| type II/III secretion system protein [Pseudomonas syringae pv. glycinea str. B076] gi|320330485|gb|EFW86464.1| type II/III secretion system protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 416 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 103/429 (24%), Positives = 171/429 (39%), Gaps = 54/429 (12%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89 + A AA + + + + I ++ PV + + V DP ADV V+ L Sbjct: 24 QSAWAASGSCAGLAAMPA-AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLL 82 Query: 90 FGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 G G ++++ + + R A + T+ AD+ + Sbjct: 83 TGVAQGTTSLMVWTACATAPRQSMVFVRGRATASMVETVPAPSADAEL------------ 130 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 +Q R +E+S T L Q+G + + S+ + G VT+ Sbjct: 131 --PSQVQTDIRFIEVSRTKLKQAGTSIFGKGSNNFLF------GAPGTVPGVTV------ 176 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 + + F++ +L+ALE + Sbjct: 177 ------------------TPGTVSGALPSIPLAESAFNIVWGGGSSKVLGILNALENSGF 218 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 TLA P+L A+SGQSASF +GG+ ++ S+ ++GV L TPTV+ RI Sbjct: 219 AYTLARPSLVALSGQSASFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTLTPTVVGRNRI 278 Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L++ EVSE I + +P R R+ DT++ L G + V++GL+ E Sbjct: 279 LLKVAPEVSELDFTSEISIAGTTVPIIRTRRTDTSIALADGESFVVSGLINTSNISTVEK 338 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDA 440 P L IPILGA FR+S+ R+E E+ + TP LV+P+A S P + Sbjct: 339 FPGLGDIPILGAFFRSSKIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFP 398 Query: 441 KAFFFNRVN 449 + +F + Sbjct: 399 RLYFLENGD 407 >gi|330819176|ref|YP_004348038.1| type II and III secretion system protein [Burkholderia gladioli BSR3] gi|327371171|gb|AEA62526.1| type II and III secretion system protein [Burkholderia gladioli BSR3] Length = 564 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 99/463 (21%), Positives = 185/463 (39%), Gaps = 43/463 (9%) Query: 23 VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82 + PP A A + + + + + ++ ++ VP ++ + + D + V Sbjct: 25 IPGAPPALAARQAE-HEENATPAQHALLDLYRGEIRLIDVPGRIKRIAIGDGSLVTANVV 83 Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER-DIAHLEMTLRRFIAD-SNIRVEM 140 R + L + G +++ +G LN + + + ++ LR +A +++V Sbjct: 84 DGR-LMLLAEKAGVTSLVAWTANG-IALNTTVRVAKGNVRETAAQLREVLAIVPDVKVIE 141 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----AGEDQV 196 ++L G V GR + A + ++N + + A + + Sbjct: 142 SGPNILLTGTV---------------HRDMLGRIKAATAGVPNLVNAIAVDEGDALKKTI 186 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 KV I E+ R+ + +G + +GP G + V+ G + G+ Sbjct: 187 HFKVRIMELTRNAQENLGIEW--DRKIAGPQAGAQGYIGSQAVAGPG-MVIAGI--STHI 241 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 + L+ + LA P L SG +ASF +GGQ + + G T V DYG+ L Sbjct: 242 ASTLNLMITRGDAYVLAAPELNTKSGGTASFLAGGQVPIP-RAGALGTTDVEYKDYGIKL 300 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P V + I +I TE+S+ V+ G P + R A + + L +G T+ ++GL+ Sbjct: 301 DIKPVVDANNVISAQIDTEISQIDPSVSYGGYPGFLTRSARSDISLRAGETMAISGLVNA 360 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 D +P L ++PI+G LFR+ F + +++ I TP + P L+ D + Sbjct: 361 DAIGNMSRLPFLGRLPIIGRLFRSDEFRSKRSDLVIFVTPMISDPT----LAPNTDLLAR 416 Query: 437 EDDAKAFFFNRV---------NKIYGPKEASEVEGQNYKGAIG 470 D F R ++ G EA + G G Sbjct: 417 ADRIDRGFHQRHGDPSPLAERDRARGKDEARQAIGPTRPQPAG 459 >gi|33601080|ref|NP_888640.1| putative secretory apparatus [Bordetella bronchiseptica RB50] gi|33575515|emb|CAE32593.1| putative secretory apparatus [Bordetella bronchiseptica RB50] Length = 470 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 100/421 (23%), Positives = 171/421 (40%), Gaps = 38/421 (9%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 + + + S+ P + A+ A + +E+G+ + ++ V V V + Sbjct: 18 MAVLLAGGSMLWTPGGRAASPAQPAVLRMEVGETQVLA-----------AAGVTRVAVGN 66 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILI-GHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 V + LF + G ++V + G +Q +++L L + +A Sbjct: 67 GQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVL-PAGRRRLREEVAALLA 125 Query: 133 D-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 R V +V+ G + D R L++ + +V++ Sbjct: 126 RIPRARSSAVGAHIVIEGSQLSEDDHARIAALAQRY--------------PEVLDFTGRV 171 Query: 192 GED-QVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFA----ADFGGKFVSEGG 243 G D V L V + E+ R L+++G + + G +G + A G Sbjct: 172 GWDRMVLLDVQVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGPLSGAAA 231 Query: 244 DFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G+L L AL + LA+P L A SG +ASF +GG+ Y+ Sbjct: 232 VRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYRATDKEG 291 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 T++ YGV L TP + + G + RI+ E S + P+ R R+A T + Sbjct: 292 NGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRAVTEFNV 350 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 SG T+VL G L + ++G+P LS++P++GALF R ETE+ I TP +V P Sbjct: 351 HSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTPTIVSPS 410 Query: 423 A 423 Sbjct: 411 D 411 >gi|330895618|gb|EGH27925.1| type II and III secretion system protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 416 Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 94/443 (21%), Positives = 169/443 (38%), Gaps = 57/443 (12%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + + P A+ + ++ + + I ++ V + + V DP Sbjct: 13 LLALVIAALCAPGAWAASGSCAGLAAMPAA----VEIDQGIQQEVRSAVPITRIAVGDPK 68 Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADS 134 ADV V+ L G G ++++ + + R + ++ AD+ Sbjct: 69 IADVHVNGTDGFLLTGVAQGTTSLMVWTACASAPRQSMVFVRGRATTAMVESVTAPSADA 128 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 + +Q R +E+S T L ++ + + SS + Sbjct: 129 QL--------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGV 174 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 VT +F++ Sbjct: 175 NVTPGAV------------------------------GGITPSIPLNNSNFNIVWGGGSS 204 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +++A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV Sbjct: 205 KVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGV 264 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L TPTV+ RI L++ EVSE I + +P+ +R+ DT++ L G + V+ Sbjct: 265 RLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVV 324 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLS 428 +GL+ + P L IPILGA FR+S+ R+E E+ + TP LV+P+A R S Sbjct: 325 SGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPS 384 Query: 429 RPDDHYSV--EDDAKAFFFNRVN 449 P + + +F + Sbjct: 385 LPGEGLRTYDPSFPRLYFLENGD 407 >gi|33596527|ref|NP_884170.1| putative secretory apparatus [Bordetella parapertussis 12822] gi|33566296|emb|CAE37209.1| putative secretory apparatus [Bordetella parapertussis] Length = 470 Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 99/421 (23%), Positives = 170/421 (40%), Gaps = 38/421 (9%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 + + + S+ P + A+ A + +E+G+ + ++ V V V + Sbjct: 18 MAVLLAGGSMLWTPGGRAASPAQPAVLRMEVGETQVLA-----------AAGVTRVAVGN 66 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILI-GHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 V + LF + G ++V + G +Q +++L L + +A Sbjct: 67 GQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVL-PAGRRRLREEVAALLA 125 Query: 133 D-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 V +V+ G + D R L++ + +V++ Sbjct: 126 RIPRAHSSAVGAHIVIEGSQLSEDDHARIAALAQRY--------------PEVLDFTGRV 171 Query: 192 GED-QVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFA----ADFGGKFVSEGG 243 G D V L V + E+ R L+++G + + G +G + A G Sbjct: 172 GWDRMVLLDVQVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGPLAGAAA 231 Query: 244 DFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G+L L AL + LA+P L A SG +ASF +GG+ Y+ Sbjct: 232 VRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYRATDKEG 291 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 T++ YGV L TP + + G + RI+ E S + P+ R R+A T + Sbjct: 292 NGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRAVTEFNV 350 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 SG T+VL G L + ++G+P LS++P++GALF R ETE+ I TP +V P Sbjct: 351 HSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTPTIVSPS 410 Query: 423 A 423 Sbjct: 411 D 411 >gi|254523433|ref|ZP_05135488.1| type II and III secretion system protein:Transport-associated [Stenotrophomonas sp. SKA14] gi|219721024|gb|EED39549.1| type II and III secretion system protein:Transport-associated [Stenotrophomonas sp. SKA14] Length = 433 Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 109/425 (25%), Positives = 178/425 (41%), Gaps = 44/425 (10%) Query: 61 QVPVDVQDVLVSDPTKADVVVH-SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 +P D++ V ++DP AD+V+ R L GK G ++L + + + ++ Sbjct: 27 SLPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHRKQAEPQRVQVRVQSA 86 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + T S + +L G ++ + + + L + G+ A++ Sbjct: 87 VQGAANT-----GTSGLLFTQQDQQGLLQGSTDSVLAHMQEQQTAAMALGKEGQLADAST 141 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFA 231 S + + + + + LKQIG S G Sbjct: 142 VSSGGVVQVEVKVVE----------FNKTALKQIGISFQNRNGSFAYGIARPGGQLPGNT 191 Query: 232 ADFGGKFVSEGGDFSVKGVLDRF---------SFETVLHALERATAIRTLAEPTLTAISG 282 G E G+ S + F + + L+ R LAEPTL A+SG Sbjct: 192 GILPGMKEGESGNESTSPISSAFRLVFGSTKGLWNADVDLLQSNGMARVLAEPTLVALSG 251 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 QSASF +GG+ G T++T +G+ L TPTVL+P RI L++ E S+ Sbjct: 252 QSASFLAGGELPILE-PQGLGTTTITYKPFGIGLTVTPTVLAPNRIALKVAPEASDLDYS 310 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 I +N +PS R+ADTTVEL G + V+ GL+ ++ IPLL +PI+G+ F Sbjct: 311 NSIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSSVNKIPLLGDLPIIGSFF 370 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 RN + R++ E+ I TP LV+P+A +L P + + + + GP Sbjct: 371 RNFDYKRQDKELVIIVTPRLVQPLARNTELPLPGAREAKPN-----LPEWGSWLLGPISQ 425 Query: 458 SEVEG 462 V G Sbjct: 426 DPVPG 430 >gi|71735124|ref|YP_276550.1| type II/III secretion system protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555677|gb|AAZ34888.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 416 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 102/429 (23%), Positives = 170/429 (39%), Gaps = 54/429 (12%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89 + A AA + + + + I ++ PV + + V DP ADV V+ L Sbjct: 24 QSAWAASGSCAGLAAMPA-AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLL 82 Query: 90 FGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 G G ++++ + + R + T+ AD+ + Sbjct: 83 TGVAQGTTSLMVWTACATAPRQSMVFVRGRATTSMVETVPAPSADAEL------------ 130 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 +Q R +E+S T L Q+G + + S+ + G VT+ Sbjct: 131 --PSQVQTDIRFIEVSRTKLKQAGTSIFGKGSNNFLF------GAPGTVPGVTV------ 176 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 + + F++ +L+ALE + Sbjct: 177 ------------------TPGTVSGALPSIPLAESAFNIVWGGGSSKVLGILNALENSGF 218 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 TLA P+L A+SGQSASF +GG+ ++ S+ ++GV L TPTV+ RI Sbjct: 219 AYTLARPSLVALSGQSASFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTLTPTVVGRNRI 278 Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L++ EVSE I + +P R R+ DT++ L G + V++GL+ E Sbjct: 279 LLKVAPEVSELDFTSEISIAGTTVPIIRTRRTDTSIALADGESFVVSGLINTSNISTVEK 338 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDA 440 P L IPILGA FR+S+ R+E E+ + TP LV+P+A S P + Sbjct: 339 FPGLGDIPILGAFFRSSKIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFP 398 Query: 441 KAFFFNRVN 449 + +F + Sbjct: 399 RLYFLENGD 407 >gi|330873641|gb|EGH07790.1| type II/III secretion system protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 416 Score = 226 bits (576), Expect = 7e-57, Method: Composition-based stats. Identities = 97/443 (21%), Positives = 170/443 (38%), Gaps = 55/443 (12%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L + P A+ + ++ + + I ++ V + + V DP Sbjct: 12 GLLVLLFTALSAPSAWAASGSCAGLAAMPAA----MEIDQGIQQNVRSSVAITRIAVGDP 67 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 ADV V+ L G G ++++ + + R A M R + Sbjct: 68 KIADVHVNGSDGFLLTGVAQGTTSLMVWTTCASAPRQSMVFV-RGRATASMVERADAPSA 126 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 ++ +Q R VE+S T L ++ + + S+ + G Sbjct: 127 EAQL------------PSQVQTDIRFVEVSRTRLKEASISIFGKGSNNFLF------GAP 168 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 VT+ + + +F++ Sbjct: 169 GTVPGVTV------------------------TPGTVSGTLPSIPLNNSNFNIVWGGGSS 204 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +L+A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV Sbjct: 205 KVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGV 264 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L TPT++ RI L++ EVSE I + +P+ +R+ DT++ L G + V+ Sbjct: 265 RLTLTPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVV 324 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LS 428 +GL+ + P L IPILGA FR+S+ R E E+ + TP LV+P+A+ S Sbjct: 325 SGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAVNAQLPS 384 Query: 429 RPDDHYS--VEDDAKAFFFNRVN 449 P + + F R N Sbjct: 385 LPGEGLRNYDPSFPRLLFMERGN 407 >gi|330976799|gb|EGH76834.1| type II and III secretion system protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 416 Score = 226 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 94/443 (21%), Positives = 169/443 (38%), Gaps = 57/443 (12%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + + P A+ + ++ + + I ++ V + + V DP Sbjct: 13 LLALVIAALCAPGAWAASGSCAGLAAMPAA----VEIDQGIQQEVRSAVPITRIAVGDPK 68 Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADS 134 ADV V+ L G G ++++ + + R + ++ AD+ Sbjct: 69 IADVHVNGTDGFLLTGVAQGTTSLMVWTACASAPRQSMVFVRGRATTAMVESVTAPSADA 128 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 + +Q R +E+S T L ++ + + SS + Sbjct: 129 QL--------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGV 174 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 VT +F++ Sbjct: 175 NVTPGAV------------------------------GGITPSIPLNNSNFNIVWGGGSS 204 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +++A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV Sbjct: 205 KVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGV 264 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L TPTV+ RI L++ EVSE I + +P+ +R+ DT++ L G + V+ Sbjct: 265 RLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVV 324 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLS 428 +GL+ + P L IPILGA FR+S+ R+E E+ + TP LV+P+A R S Sbjct: 325 SGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPS 384 Query: 429 RPDDHYSV--EDDAKAFFFNRVN 449 P + + +F + Sbjct: 385 LPGEALRTYDPSFPRLYFLENGD 407 >gi|66047618|ref|YP_237459.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63258325|gb|AAY39421.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 416 Score = 226 bits (575), Expect = 9e-57, Method: Composition-based stats. Identities = 94/443 (21%), Positives = 169/443 (38%), Gaps = 57/443 (12%) Query: 16 LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75 L + + P A+ + ++ + + I ++ V + + V DP Sbjct: 13 LLALVIATLCAPGAWAASGSCAGLAAMPAA----VEIDQGIQQEVRSAVPITRIAVGDPK 68 Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADS 134 ADV V+ L G G ++++ + + R + ++ AD+ Sbjct: 69 IADVHVNGTDGFLLTGVAQGTTSLMVWTACASAPRQSMVFVRGRATTAMVESVTAPSADA 128 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 + +Q R +E+S T L ++ + + SS + Sbjct: 129 QL--------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGV 174 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 VT +F++ Sbjct: 175 NVTPGAV------------------------------GGITPSIPLNNSNFNIVWGGGSS 204 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +++A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV Sbjct: 205 KVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGV 264 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L TPTV+ RI L++ EVSE I + +P+ +R+ DT++ L G + V+ Sbjct: 265 RLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVV 324 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLS 428 +GL+ + P L IPILGA FR+S+ R+E E+ + TP LV+P+A R S Sbjct: 325 SGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPS 384 Query: 429 RPDDHYSV--EDDAKAFFFNRVN 449 P + + +F + Sbjct: 385 LPGEALRTYDPSFPRLYFLENGD 407 >gi|92113782|ref|YP_573710.1| type II and III secretion system protein [Chromohalobacter salexigens DSM 3043] gi|91796872|gb|ABE59011.1| type II and III secretion system protein [Chromohalobacter salexigens DSM 3043] Length = 483 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 101/448 (22%), Positives = 175/448 (39%), Gaps = 58/448 (12%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 + + + L V + D A + R + L G G ++ + Sbjct: 67 TLRLDIGDQQRLVFERPVSRTALGDGDIASAQMVDARQLLLTGLAAGTTSLSVWRDGRDA 126 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + + +S + +DT L G ++ +A Sbjct: 127 PQRYRVSVRP--RGARGM------ESEYTLADGTDTPTLAGESESLARHAQAR------- 171 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------- 218 + + ++ G QV + + EV R L+ GF Sbjct: 172 --------SRLGDQNTVDATRQTGPVQVQTDIRVVEVNRSKLQSAGFFFGKNNGGNTLIG 223 Query: 219 --ITGSSSGP-------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 +G+ G S+ F+ G F + G +++ S V+ AL Sbjct: 224 VGTSGALGGAEAVGDSFSEGFSFLTGSGFQTGNGGYNIVVGNANDSVLGVISALRSNGFA 283 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 TLAEP+L +SGQSASF +GG+ + VS+ G + ++GV L TPTVL I Sbjct: 284 YTLAEPSLVTLSGQSASFLAGGEFPFP-VSNDDGDVRIDFKEFGVRLQLTPTVLDSNSIM 342 Query: 330 LRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L++ EVSE + +P+ VR+ DT+V+L G +++++GL+ + Q + Sbjct: 343 LKVAPEVSELDFTQGVEASGVAVPALNVRRTDTSVQLGDGESLIISGLVSNSTMQTVDKF 402 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAF 443 P L +P++GA FR++RF + E+ + TP LV P+A P + D + Sbjct: 403 PGLGDLPVIGAFFRSTRFETQNKELVMIVTPHLVAPMAAGAPRPELPGEALRRYDPSYLE 462 Query: 444 FFNRVNKIYGPKEASEVEGQNYKGAIGF 471 + P++A +E G +GF Sbjct: 463 LL------FDPQDAESLERL---GNVGF 481 >gi|330953053|gb|EGH53313.1| type II and III secretion system protein [Pseudomonas syringae Cit 7] Length = 416 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 94/441 (21%), Positives = 168/441 (38%), Gaps = 54/441 (12%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77 S V A AA + + + + I ++ V + + V DP A Sbjct: 12 SLLALVIAALCAPGAWAASGSCAGLAAMPA-AVEIDQGIQQEVRSAVPITRIAVGDPKIA 70 Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNI 136 DV V+ L G G ++++ + + R + ++ AD+ + Sbjct: 71 DVHVNGTDGFLLTGVAQGTTSLMVWTACASAPRQSMVFVRGRATTAMVESVTAPSADAQL 130 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 +Q R +E+S T L ++ + + S+ + V Sbjct: 131 --------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNV 176 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 + + +F++ Sbjct: 177 ------------------------------TPGTVSGTRPNIPLNNSNFNIVWGGGSSKV 206 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 +++A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV L Sbjct: 207 LGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRL 266 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 TPTV+ RI L++ EVSE I + +P+ +R+ DT++ L G + V++G Sbjct: 267 TLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSG 326 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRP 430 L+ + P L IPILGA FR+S+ R+E E+ + TP LV+P+A R S P Sbjct: 327 LISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPSLP 386 Query: 431 DDHYSV--EDDAKAFFFNRVN 449 + + +F + Sbjct: 387 GEGLRTYDPSFPRLYFLENGD 407 >gi|91777217|ref|YP_552425.1| putative type II and III secretion system outermembrane protein, secretin [Burkholderia xenovorans LB400] gi|91689877|gb|ABE33075.1| Putative type II and III secretion system outermembrane protein, secretin [Burkholderia xenovorans LB400] Length = 595 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 99/450 (22%), Positives = 181/450 (40%), Gaps = 37/450 (8%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 +R +++ L A + A+AA +D + + + +V IL +P Sbjct: 12 RRVLPSVLVGMLLCEAAPAALAQTAQAAHAAYTAATDSPSASTRVLEMFRGEVRILHIPG 71 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDILIERDI 120 ++ + + + V ++ L G+ G ++++ G + + + Sbjct: 72 TIKRIAIGNGKLLTANVV-DGSLMLLGEQDGITSLVVWNDKGIALQTTVRIAKAEVNASL 130 Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L LR +R++ + +VL G++ +G + A Sbjct: 131 EQLRAVLRSVAG---LRIDAIGSNIVLSGVI---------------HRDMAGTVKAATQE 172 Query: 181 SKKVMNLLNIAGED----QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADF 234 K V++ D V KV I EV R + +G + G G + S A Sbjct: 173 MKNVVDTTTFDEGDALRKTVHFKVQIMEVTRTGQRNLGIAWDSAFRGPQIGGAASVATG- 231 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 K ++ G + + G+ + + ++ LA P L SG +ASF +GGQ Sbjct: 232 AAKAITAGTSYFLAGIAS--NITSQINFAVENGDAYVLAAPELNTKSGGTASFLAGGQVP 289 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 S + G TS+ DYG+ L P V + I + TE+S+ V MP + R Sbjct: 290 IPQ-SGALGTTSIEYKDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYAGMPGFLTR 348 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + + +G T+ ++GL+ D G+P LS++PI+G LFR+ RF +++++ I Sbjct: 349 NTSSDISMRAGETLAISGLVSADAANDSNGMPFLSQVPIIGQLFRSDRFRAKKSDLVIFV 408 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 TP + P +LS D + D F Sbjct: 409 TPVISDP----ELSPNTDLLARADKLDENF 434 >gi|307726635|ref|YP_003909848.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] gi|307587160|gb|ADN60557.1| type II and III secretion system protein [Burkholderia sp. CCGE1003] Length = 642 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 100/457 (21%), Positives = 191/457 (41%), Gaps = 43/457 (9%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 +R +R +++ L P+ A + +D + + + +V IL Sbjct: 8 VRLRRRVLPSVLVGVLLCEAA------PLTLAQSIYSPAADDASAASRVLEMFRGEVRIL 61 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDI---LI 116 VP ++ + + + V + L G+ G ++++ G + I + Sbjct: 62 HVPGTIKRIAIGNGKLITANVVDGN-LMLLGEQDGMTSLVVWNEKGIALQTTVRIAKSEV 120 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 + L L+ S +R++ + +VL G++ + V + ++ Sbjct: 121 NASLQQLRAVLKSV---SGLRIDAIGSNIVLSGVI-----HRDMVAVVKS---------- 162 Query: 177 ANSSSKKVMNLLNI----AGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSF 230 A K V++ + A V KV I EV R+ + +G + G G + S Sbjct: 163 ATQDMKNVVDTTTVDEGEALRKTVHFKVQIMEVTRNAQRNLGIAWDSAFRGPQIGGAASV 222 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A K V+ G + + G+ + + ++ LA P L SG +ASF +G Sbjct: 223 ATG-AAKAVTAGTSYFLAGIAS--NISSQINFAVNNGDAFILAAPELNTRSGGTASFLAG 279 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 GQ S + G T+V DYGV L P V + G I + TE+S+ V+ G +P Sbjct: 280 GQVPIPQ-SGALGTTNVMYKDYGVKLSINPVVDANGIISAHLTTEISQIDPTVSYGGLPG 338 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + + + +G T+ ++GL+ D +G+P L +IP++G LFR+ F +++++ Sbjct: 339 FLTRSTSSDISMRTGETLAISGLISADAVNDSDGMPFLGQIPVIGQLFRSDSFRAKKSDL 398 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 I TP + P +L+ D + D + + N+ Sbjct: 399 VIFVTPLISDP----ELAPNTDLLARADRIDSGYVNK 431 >gi|323529159|ref|YP_004231311.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] gi|323386161|gb|ADX58251.1| type II and III secretion system protein [Burkholderia sp. CCGE1001] Length = 597 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 93/437 (21%), Positives = 179/437 (40%), Gaps = 37/437 (8%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 R +R +++ L P+ A A + +D + + +V IL+ Sbjct: 9 RLRRRVLPSVLIGVLLCEAA------PLALAQGASASATDDASATTHVLEMFRGEVRILR 62 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDILIE 117 +P ++ + + + V + L G+ G ++++ G + + Sbjct: 63 LPGTIKRIAIGNGKLITANVVDGN-LMLLGEQDGMTSLVVWNEKGIALQTTVRIAKAEVN 121 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 + L L+ S ++++ + +VL G+V + V + ++ A Sbjct: 122 ASLQQLRAVLKSV---SGLQIDAIGSNIVLSGVV-----HRDMVAVIKS----------A 163 Query: 178 NSSSKKVMNLLNI----AGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAA 232 K V++ + A V KV I EV R+ +++G S + A Sbjct: 164 TQDMKNVIDTTTVDEGEALRKTVHFKVQIMEVTRNTQRKLGIAWDSAFRGPQIGGAASVA 223 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 K V+ G + + G+ + + ++ LA P L SG +ASF +GGQ Sbjct: 224 SGAAKAVTAGTSYFLAGIAS--NISSQINFAVNNGDAFILAAPELNTKSGGTASFLAGGQ 281 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 S + G T+V DYGV L P V + G I + TE+S+ V+ G +P + Sbjct: 282 VPIPQ-SGALGTTNVMYKDYGVKLSINPVVDANGIISAHLTTEISQIDPTVSYGGLPGFL 340 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + + + +G T+ ++GL+ D +G+P L +IP++G LFR+ F +++++ I Sbjct: 341 TRSTSSDISMRTGETLAISGLISADSVNDSDGMPFLGQIPVIGQLFRSDSFRAKKSDLVI 400 Query: 413 AATPFLVKPVAMRDLSR 429 TP + P + Sbjct: 401 FVTPLISDPELAPNADL 417 >gi|213968016|ref|ZP_03396162.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato T1] gi|301383668|ref|ZP_07232086.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato Max13] gi|302059963|ref|ZP_07251504.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato K40] gi|302131629|ref|ZP_07257619.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927359|gb|EEB60908.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato T1] Length = 419 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 161/408 (39%), Gaps = 48/408 (11%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + I ++ V + + V DP ADV V+ L G G ++++ Sbjct: 43 MEIDQGIQQNVRSSVAITRIAVGDPKIADVHVNGNDGFLLTGVAQGTTSLMVWTTCASAP 102 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + + R A M R + + V Q R VE+S T L Sbjct: 103 RQSMVFV-RGRATASMVERANAPSAEAHEAQLPSQV---------QTDIRFVEVSRTRLK 152 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 ++ + + S+ + G VT+ + Sbjct: 153 EASISIFGKGSNNFLF------GAPGTVPGVTV------------------------TPG 182 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + G+F++ +L+A+E + TLA P+L A++GQSASF + Sbjct: 183 TVSGTLPSIPLNNGNFNIVWGGGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLA 242 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNA 345 GG+ + S+ ++GV L TPT++ RI L++ EVSE I + Sbjct: 243 GGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLKVAPEVSELDFSAGITIAG 302 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ +R+ DT++ L G + V++GL+ + P L IPILGA FR+S+ R Sbjct: 303 TTVPALNIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQR 362 Query: 406 EETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFNRVN 449 E E+ + TP LV+P+A+ S P + + F R N Sbjct: 363 NERELLMIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLLFMERGN 410 >gi|28871966|ref|NP_794585.1| type II/III secretion system protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28855219|gb|AAO58280.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331014708|gb|EGH94764.1| bacterial type II/III secretion system protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 419 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 161/408 (39%), Gaps = 48/408 (11%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + I ++ V + + V DP ADV V+ L G G ++++ Sbjct: 43 MEIDQGIQQNVRSSVAITRIAVGDPKIADVHVNGSDGFLLTGVAQGTTSLMVWTTCASAP 102 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + + R A M R + + V Q R VE+S T L Sbjct: 103 RQSMVFV-RGRATASMVERANAPSAEAHEAQLPSQV---------QTDIRFVEVSRTRLK 152 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 ++ + + S+ + G VT+ + Sbjct: 153 EASISIFGKGSNNFLF------GAPGTVPGVTV------------------------TPG 182 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + G+F++ +L+A+E + TLA P+L A++GQSASF + Sbjct: 183 TVSGTLPSIPLNNGNFNIVWGGGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLA 242 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNA 345 GG+ + S+ ++GV L TPT++ RI L++ EVSE I + Sbjct: 243 GGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLKVAPEVSELDFSAGITIAG 302 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P+ +R+ DT++ L G + V++GL+ + P L IPILGA FR+S+ R Sbjct: 303 TTVPALNIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQR 362 Query: 406 EETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFNRVN 449 E E+ + TP LV+P+A+ S P + + F R N Sbjct: 363 NERELLMIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLLFMERGN 410 >gi|257483347|ref|ZP_05637388.1| type II and III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012566|gb|EGH92622.1| type II and III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 416 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 98/425 (23%), Positives = 170/425 (40%), Gaps = 54/425 (12%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 AA + + + + I ++ PV + + V DP ADV V+ L G Sbjct: 28 AASGSCAGLAAMPA-AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVA 86 Query: 94 VGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G ++++ + + R A + ++ AD+ + Sbjct: 87 QGTTSLMVWTACATAPRQSMVFVRGRATASMIESVTAPSADAEL--------------PS 132 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 +Q R +E+S T L ++ + + S+ + VT Sbjct: 133 QVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTP-------------- 178 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 G+ SG S + +F++ +L+A+E + L Sbjct: 179 --------GTVSGTRPSIPLN--------NSNFNIVWGGGSSKVLGMLNAMENSGYAYIL 222 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L++ Sbjct: 223 ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 282 Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 EVSE I + ++P+ +R+ DT++ L G + V++GL+ P L Sbjct: 283 APEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPGL 342 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDAKAFF 444 IPILGA FRNS+ R+E E+ + TP LV+P+A S P + + +F Sbjct: 343 GDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLYF 402 Query: 445 FNRVN 449 + Sbjct: 403 LENGD 407 >gi|298488959|ref|ZP_07006982.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156457|gb|EFH97554.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 416 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 99/429 (23%), Positives = 172/429 (40%), Gaps = 54/429 (12%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89 + A AA + + + + I ++ PV + + V P ADV V+ L Sbjct: 24 QSAWAASGSCAGLAAMPA-AVEIDQGIQQEVRSPVAITRIAVGAPKIADVHVNGTDGFLL 82 Query: 90 FGKNVGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 G G ++++ + + R A + ++ AD+ + Sbjct: 83 TGVAQGTTSLMVWTACATAPRQSMVFVRGRATASMIESVTAPSADAEL------------ 130 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 +Q R +E+S T L ++ + + S+ + VT Sbjct: 131 --PSQVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTP---------- 178 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 G+ SG S + +F++ +L+A+E + Sbjct: 179 ------------GTVSGTRPSIPLN--------NSNFNIVWGGGSSKVLAMLNAMENSGY 218 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 TLA P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI Sbjct: 219 AYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRI 278 Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L++ EVSE I + ++P+ +R+ DT++ L G + V++GL+ Sbjct: 279 LLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVSK 338 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDA 440 P L IPILGA FRNS+ R+E E+ + TP LV+P+A S P + Sbjct: 339 FPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFP 398 Query: 441 KAFFFNRVN 449 + +F + Sbjct: 399 RLYFLENGD 407 >gi|330873797|gb|EGH07946.1| type II/III secretion system protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 384 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 100/412 (24%), Positives = 165/412 (40%), Gaps = 53/412 (12%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + I ++ PV + + V DP ADV V+ L G G ++++ Sbjct: 8 QRLVEIDQGIQQEVRSPVAIPRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACA 67 Query: 107 KQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + R A + T+ AD+ + +Q R +E+S Sbjct: 68 TAPRQSMVFVRGRATASMVETVPAPSADAEL--------------PSQVQTDIRFIEVSR 113 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T L Q+G + + S+ + G VT+ Sbjct: 114 TKLKQAGTSIFGKGSNNFLF------GAPGTVPGVTV----------------------- 144 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + + F++ +L+ALE + TLA P+L A+SGQSA Sbjct: 145 -TPGTVSGALPSIPLAESAFNIVWGGGSSKVLGILNALENSGFAYTLARPSLVALSGQSA 203 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----I 341 SF +GG+ ++ S+ ++GV L TPTV+ RI L++ EVSE I Sbjct: 204 SFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTLTPTVVGRNRILLKVAPEVSELDFTSEI 263 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + +P R R+ DT++ L G + V++GL+ E P L IPILGA FR+S Sbjct: 264 SIAGTTVPIIRTRRTDTSIALADGESFVVSGLINTSNISTVEKFPGLGDIPILGAFFRSS 323 Query: 402 RFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDAKAFFFNRVN 449 + R+E E+ + TP LV+P+A S P + + +F + Sbjct: 324 KIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLYFLENGD 375 >gi|330989176|gb|EGH87279.1| type II and III secretion system protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 416 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 99/425 (23%), Positives = 171/425 (40%), Gaps = 54/425 (12%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 AA + + + + I ++ PV + + V DP ADV V+ L G Sbjct: 28 AASGSCAGLAAMPA-AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVA 86 Query: 94 VGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G ++++ + + R A + ++ AD+ + Sbjct: 87 QGTTSLMVWTACATAPRQSMVFVRGRATASMIESVTAPSADAEL--------------PS 132 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 +Q R +E+S T L ++ + + S+ + VT Sbjct: 133 QVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTP-------------- 178 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 G+ SG S + +F++ +L+A+E + TL Sbjct: 179 --------GTVSGTRPSIPLN--------NSNFNIVWGGGSSKVLGMLNAMENSGYAYTL 222 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L++ Sbjct: 223 ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 282 Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 EVSE I + ++P+ +R+ DT++ L G + V++GL+ P L Sbjct: 283 APEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPGL 342 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDAKAFF 444 IPILGA FRNS+ R+E E+ + TP LV+P+A S P + + +F Sbjct: 343 GDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLYF 402 Query: 445 FNRVN 449 + Sbjct: 403 LENGD 407 >gi|330811024|ref|YP_004355486.1| type II secretion system protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379132|gb|AEA70482.1| putative type II secretion system protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 407 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 93/390 (23%), Positives = 146/390 (37%), Gaps = 67/390 (17%) Query: 51 SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110 +G L++ V + V DP ADV L G G ++++ K Sbjct: 44 EVGQGLQSELRILAPVTKLAVGDPKIADVQPSGNDAFILTGLAPGATSLMVWTDCSKIPR 103 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + ++ L G + + Sbjct: 104 QSMVFVKGRATE-----------------------ALTGAASIPSEDPMLLA-------- 132 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKS 229 QV + EV R LK+ G+ S Sbjct: 133 ------------------------QVQTDIRFVEVSRTKLKEASTSIFGTRGNFLFGSPR 168 Query: 230 FAADFGG----KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 GG F++ + +++ALE + TLA P+L A+SGQSA Sbjct: 169 TLPTVGGIVRPSLPVNNDMFNLSFATGKTLL--MINALEGSGFAYTLARPSLVALSGQSA 226 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVI 341 SF +GG+ S+ + S+ ++G+ L TPTV+ RI L++ EVSE + Sbjct: 227 SFLAGGEVPIPVPSAGSDNVSIEYKEFGIRLTLTPTVIGKNRIALKVAPEVSELDFTNAV 286 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + +P+ VR+ DT++ L G + V++GL+ P L IPILGA FR++ Sbjct: 287 NIAGTLVPALTVRRTDTSIALADGESFVISGLISTRNSSQVNKFPGLGDIPILGAFFRDN 346 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPD 431 NREE E+ + TP LV+P+A D P Sbjct: 347 SINREERELLMIVTPHLVQPLAA-DAQLPT 375 >gi|289625312|ref|ZP_06458266.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647837|ref|ZP_06479180.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330867146|gb|EGH01855.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871034|gb|EGH05743.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 416 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 99/425 (23%), Positives = 171/425 (40%), Gaps = 54/425 (12%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 AA + + + + I ++ PV + + V DP ADV V+ L G Sbjct: 28 AASGSCAGLAAMPA-AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVA 86 Query: 94 VGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G ++++ + + R A + ++ AD+ + Sbjct: 87 QGTTSLMVWTSCATAPRQSMVFVRGRATASMIESVTAPSADAEL--------------PS 132 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 +Q R +E+S T L ++ + + S+ + VT Sbjct: 133 QVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTP-------------- 178 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 G+ SG S + +F++ +L+A+E + TL Sbjct: 179 --------GTVSGTRPSIPLN--------NSNFNIVWGGGSSKVLGMLNAMENSGYAYTL 222 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L++ Sbjct: 223 ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 282 Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 EVSE I + ++P+ +R+ DT++ L G + V++GL+ P L Sbjct: 283 APEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPGL 342 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDAKAFF 444 IPILGA FRNS+ R+E E+ + TP LV+P+A S P + + +F Sbjct: 343 GDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLYF 402 Query: 445 FNRVN 449 + Sbjct: 403 LENGD 407 >gi|330963438|gb|EGH63698.1| type II/III secretion system protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 416 Score = 222 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 96/441 (21%), Positives = 169/441 (38%), Gaps = 55/441 (12%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L + P A+ + ++ + + I ++ V + + V DP Sbjct: 12 GLLVLLFTALSAPSAWAASGSCAGLAAMPAA----MEIDQGIQQNVRSSVAITRIAVGDP 67 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 ADV V+ L G G ++++ + + R A M R + Sbjct: 68 KIADVHVNGIDGFLLTGVAQGTTSLMVWTTCASAPRQSMVFV-RGRATASMVERADAPSA 126 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 ++ +Q R VE+S T L ++ + + S+ + G Sbjct: 127 EAQL------------PSQVQTDIRFVEVSRTRLKEASISIFGKGSNNFLF------GAP 168 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 VT+ + + +F++ Sbjct: 169 GTVPGVTV------------------------TPGTVSGTLPSIPLNNSNFNIVWGGGSS 204 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +L+A+E + TLA P+L A++GQSASF +GG+ + S+ ++GV Sbjct: 205 KVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGV 264 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L TPT++ RI L++ EVSE I + +P+ +R+ DT++ L G + V+ Sbjct: 265 RLTLTPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVV 324 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LS 428 +GL+ + P L IPILGA FR+S+ R E E+ + TP LV+P+A+ S Sbjct: 325 SGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAVNAQLPS 384 Query: 429 RPDDHYS--VEDDAKAFFFNR 447 P + + F R Sbjct: 385 LPGEGLRNYDPSFPRLLFMER 405 >gi|330887974|gb|EGH20635.1| type II and III secretion system protein [Pseudomonas syringae pv. mori str. 301020] Length = 416 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 98/425 (23%), Positives = 170/425 (40%), Gaps = 54/425 (12%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 AA + + + + I ++ PV + + V DP ADV V+ G Sbjct: 28 AASGSCAGLAAMPA-AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLFTGVA 86 Query: 94 VGQANVILIGHDGKQMLNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 G ++++ + + R A + ++ AD+ + Sbjct: 87 QGTTSLMVWTACATAPRQSMVFVRGRATASMIESVTAPSADAEL--------------PS 132 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 +Q R +E+S T L ++ + + S+ + VT Sbjct: 133 QVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTP-------------- 178 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 G+ SG S + +F++ +L+A+E + TL Sbjct: 179 --------GTVSGTRPSIPLN--------NSNFNIVWGGGSSKVLGMLNAMENSGYAYTL 222 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L++ Sbjct: 223 ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 282 Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 EVSE I + ++P+ +R+ DT++ L G + V++GL+ P L Sbjct: 283 APEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPGL 342 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDDAKAFF 444 IPILGA FRNS+ R+E E+ + TP LV+P+A S P + + +F Sbjct: 343 GDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLYF 402 Query: 445 FNRVN 449 + Sbjct: 403 LENGD 407 >gi|302185189|ref|ZP_07261862.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae 642] Length = 416 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 94/409 (22%), Positives = 165/409 (40%), Gaps = 53/409 (12%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + I ++ V + + V DP ADV V+ L G G ++++ Sbjct: 43 VEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACASAP 102 Query: 110 LNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + + R + ++ AD+ + +Q R +E+S T L Sbjct: 103 RQSMVFVRGRATTAMVESVTAPSADAQL--------------PSQVQTDIRFIEVSRTKL 148 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 ++ + + S+ + VT G+ SG Sbjct: 149 KEASTSIFGKGSNNFLFGAPGTVPGVNVTP----------------------GTVSGTRP 186 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 S + +F++ +++A+E + TLA P+L A++GQSASF Sbjct: 187 SIPLN--------NSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFL 238 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVN 344 +GG+ + S+ ++GV L TPTV+ RI L++ EVSE I + Sbjct: 239 AGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIA 298 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ +R+ DT++ L G + V++GL+ + P L IPILGA FR+S+ Sbjct: 299 GTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQ 358 Query: 405 REETEIFIAATPFLVKPVA--MRDLSRPDDHYSV--EDDAKAFFFNRVN 449 R+E E+ + TP LV+P+A R S P + + +F + Sbjct: 359 RDERELLMIVTPHLVQPLAANARLPSLPGEALRTYDPSFPRLYFLENGD 407 >gi|114321311|ref|YP_742994.1| type II and III secretion system protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227705|gb|ABI57504.1| type II and III secretion system protein [Alkalilimnicola ehrlichii MLHE-1] Length = 428 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 107/437 (24%), Positives = 176/437 (40%), Gaps = 80/437 (18%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89 A A ++ V + K + G++K L P V V V DP AD+ + R + L Sbjct: 32 NVAQAGCDRVNSV-LPHVKHLDAGVHK--RLTFPTRVTRVAVGDPDVADLEIIGDRELLL 88 Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149 G + G +V + + +++ ++V + Sbjct: 89 TGVDGGLTSVYVWTTCNDRPDRTLVIVSA--------------REALQVHEAEGS----- 129 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + +L QV + + EV R Sbjct: 130 -------RDQVADL-----------------------------PMQVQADIRLVEVSRSK 153 Query: 210 LKQI-----------GFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 L+++ F GS SG + D + F++ F Sbjct: 154 LREMGGSILGRRGSANFLFGGPGSVSGSVAPGGVGDANVGLPASDSGFNIFYGGGGSRFL 213 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 ++++ALE TLAEP+L A+SGQSA+F +GG+ SS + ++ ++GV + Sbjct: 214 SMINALEANDFAYTLAEPSLVALSGQSATFHAGGEFPVPVPSSGSDTINIRFKEFGVRVS 273 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 FTPTV+ R+ L++ EVSE + +P RVR+ DTTV L G + V++GL Sbjct: 274 FTPTVIDGDRLTLKVAPEVSELDDTSGIEIAGTRVPGLRVRRTDTTVTLGDGESFVISGL 333 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP--- 430 + + + + P L IP+LGA FR+SR + E+ E+ + TP LV+P+A RD +P Sbjct: 334 VSNHMASQVDKFPGLGNIPVLGAFFRSSRVSEEDRELLMIVTPHLVQPLA-RDAEQPPLP 392 Query: 431 --DDHYSVEDDAKAFFF 445 D + FF Sbjct: 393 GEDLRDYRPSWTEQFFL 409 >gi|311105392|ref|YP_003978245.1| type II and III secretion system family protein 1 [Achromobacter xylosoxidans A8] gi|310760081|gb|ADP15530.1| bacterial type II and III secretion system family protein 1 [Achromobacter xylosoxidans A8] Length = 456 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 93/400 (23%), Positives = 167/400 (41%), Gaps = 42/400 (10%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 +S ++I + + + IL P V+ V + + + R + +F + G ++ Sbjct: 16 VSPAAWPADEEIELQVGETRILSHPG-VKRVAIGNGQVIGAIEAEGREVIVFARAEGVSS 74 Query: 99 VILIGHDGKQMLNLDILIER-DIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQD 156 + + +G + ++ + L + +A R V +++ G + D Sbjct: 75 LHVW-ANGARAKAYELRVVPAGAPRLRAEVEALLARIPGARSTEVGGRILIEGDDLSDDD 133 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLKVTIAEVRRDILKQIGF 215 R L++ + V++ + + V L V + E+ L+ +G Sbjct: 134 RLRITALADRY--------------PAVLDFTGQVGWDRMVQLDVQVVEIPTSKLRDLGV 179 Query: 216 QHSITGSSSGPSKSFAADFG----------------GKFVSEGGDFSVKGVLDRFSFETV 259 + S G + A D G G+ S G F V +L + Sbjct: 180 RWD-GMSQGGINAGLAWDAGSRGRVSRPGEEIIETMGRVSSPAGYFGVNALL-----SSR 233 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 + L ++ LA+P L A SG SA+F +GG+ Y + + + G ++ YGV+L T Sbjct: 234 IAMLAQSGEAVMLAQPQLLARSGASATFLAGGEVPY-SSTDTRGNSTTLFKPYGVMLRIT 292 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P V G I I+ E S ++ P+ R R+A T + SG T+V+ G L + Sbjct: 293 PRVDRNGIIRSLIEVEASSVDNALSVPGGPALRTRRASTEFNVRSGDTLVIGGFLSRERD 352 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G+P L IP+LGALF + R+ ETE+ I TP L+ Sbjct: 353 EASDGLPWLKDIPVLGALFSSRRYQLRETELAIFVTPKLI 392 >gi|118581113|ref|YP_902363.1| type II and III secretion system protein [Pelobacter propionicus DSM 2379] gi|118503823|gb|ABL00306.1| type II and III secretion system protein [Pelobacter propionicus DSM 2379] Length = 386 Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 95/402 (23%), Positives = 163/402 (40%), Gaps = 54/402 (13%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 G + + +NK +++ + + V +++P AD+++ +PR + L G +G ++I+ Sbjct: 28 AGVRTQVIVNKSVLVNLKNPAERVSIANPAIADLLLITPRQIQLNGLALGATSLIVWEKG 87 Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 G++ L D+ + + + V+L V ++ + Sbjct: 88 GEKPLFFDVNVVGNTNIDDSQ-----------------QVLLQVKVA---------QIDK 121 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 T L G + + + + + IG + + S+SG Sbjct: 122 TALKNLGVSFLVKNQNANGFSNM------------------------IGAPSTSSTSASG 157 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 A+ S +++ V+ AL + LAEP L SGQ Sbjct: 158 DGTISTANGIIDGFSSLNPYTMGITHFPSGVSAVIKALATKGMAKILAEPNLVVKSGQKG 217 Query: 286 SFTSGGQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIG 342 F +G + + + + ST S+ + GV L+F P V+ G I L + EVS Sbjct: 218 EFFAGSRIPFSVLENTGSTSTPSIRWEEVGVKLNFKPFVMESGTIALELDPVEVSNIQGT 277 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + P R T+ EL G ++VLAGLL+D+ + +PLL IPILGALFR + Sbjct: 278 LETNGYPVIDTRTIKTSAELRDGESLVLAGLLRDETYKSISKVPLLGDIPILGALFRTTE 337 Query: 403 FNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAF 443 ++ETE+ TP LV P V + P D + K F Sbjct: 338 NEQKETELVFFITPKLVMPEVPGVKVELPTDKQLTPEQEKEF 379 >gi|187921506|ref|YP_001890538.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] gi|187719944|gb|ACD21167.1| type II and III secretion system protein [Burkholderia phytofirmans PsJN] Length = 561 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 95/435 (21%), Positives = 171/435 (39%), Gaps = 37/435 (8%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + + P A + + + +V IL VP ++ + + + Sbjct: 21 GMLLCEAAPAALAQVGYSAAMASPSASTRVLEMFRGEVRILHVPGTIKRIAIGNGKLVTA 80 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDILIERDIAHLEMTLRRFIADSN 135 V ++ L G+ G ++++ G + + + L L+ S Sbjct: 81 NVV-DGSLMLLGERDGITSLVVWNEKGIALQTTVRIAKAEVSASVEQLRAVLQSV---SG 136 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED- 194 + ++ + +VL G++ +G + A + V++ + D Sbjct: 137 LHIDAIGSNIVLSGVI---------------HRDMTGIVKAATQDMQNVIDTTKVDEGDA 181 Query: 195 ---QVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 V KV I EV R + +G + G G + S A K V+ G + + G Sbjct: 182 LRKTVHFKVQIMEVTRTGQRNLGIAWDSAFKGPQIGGAASVATG-AAKAVTAGTSYFLAG 240 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + + + ++ LA P L SG +ASF +GG S + G TSV Sbjct: 241 IAS--NITSQINFAVENGDAYVLAAPELNTKSGGTASFLAGGTVPIPQ-SGALGTTSVEY 297 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 DYG+ L P V + I + TE+S+ V G MP + R + + + +G T+ Sbjct: 298 RDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYGGMPGFLTRNTTSDISMRAGETLA 357 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++GL+ D G+P LSK+PI+G LFR+ F +++++ I TP + P +LS Sbjct: 358 ISGLVSADAANDTTGMPFLSKVPIIGQLFRSDAFRAKKSDLVIFVTPVISDP----ELSP 413 Query: 430 PDDHYSVEDDAKAFF 444 D + D F Sbjct: 414 NADLLARADRLDKSF 428 >gi|296158514|ref|ZP_06841344.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] gi|295891082|gb|EFG70870.1| type II and III secretion system protein [Burkholderia sp. Ch1-1] Length = 590 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 92/415 (22%), Positives = 170/415 (40%), Gaps = 37/415 (8%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 +D + + + +V IL +P ++ + + + V ++ L G+ G ++ Sbjct: 38 TDSLSAGTRVLEMFRGEVRILHIPGTIKRIAIGNGKLLTANVV-DGSLMLLGEQDGITSL 96 Query: 100 ILIGHDG----KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 ++ G + + + L L+ +R++ + ++VL G++ Sbjct: 97 VVWNDKGIALQTTVRIAKAEVNASLEQLRAVLKSVAG---LRIDAIGSSIVLSGVI---- 149 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----QVTLKVTIAEVRRDILK 211 +G + A K V++ + D V KV I EV R + Sbjct: 150 -----------HRDMAGIVKAATQDMKNVVDTTTVDEGDALRKTVHFKVQIMEVTRTGQR 198 Query: 212 QIGFQH--SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 +G + G G + S A K V+ G + + G+ + + ++ Sbjct: 199 NLGIAWDSAFKGPQIGGAASVATG-AAKAVTAGTSYFLAGIAS--NITSQINFAVENGDA 255 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 LA P L SG +ASF +GGQ S + G TS+ DYG+ L P V + I Sbjct: 256 YVLAAPELNTKSGGTASFLAGGQVPIPQ-SGALGTTSIEYKDYGIKLSIVPVVDANNIIS 314 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + TE+S+ V MP + R + + + +G T+ ++GL+ D G+P LS Sbjct: 315 AHLTTEISQIDPSVTYAGMPGFLTRNTSSDISMRAGETLAISGLVSADAANGSNGMPFLS 374 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 ++PI+G LFR+ F +++++ I TP + P +LS D + D F Sbjct: 375 QVPIIGQLFRSDSFRAKKSDLVIFVTPVISDP----ELSPNTDLLARADKLDENF 425 >gi|327541686|gb|EGF28210.1| bacterial type II/III secretion system protein [Rhodopirellula baltica WH47] Length = 454 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 95/338 (28%), Positives = 156/338 (46%), Gaps = 29/338 (8%) Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 + + +++RV + ++ ++ G V ++ D +AV ++E F + V+N Sbjct: 1 MNSQLPLASLRVTPIGESAIISGYVTSVDDVDKAVAITEQFYT-------------TVIN 47 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGD 244 + + G QV L I EV R L+++G +I + S D G V Sbjct: 48 NIQVVGIQQVLLHTKIMEVSRTKLRELGVDLAILDDNFTLLNGPSGVLDVGAGIVEGDAG 107 Query: 245 FSVKGVLD-------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F + D +FET+++AL + LAEPT+ A G+ A FT GG+ Sbjct: 108 FGPIPLGDTNLRFNVNGNFETLINALHEQRLTKLLAEPTVVATHGRPARFTVGGRIP-TI 166 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRV 353 V G +T DYG + F P V+ PGRI L ++ EVSEP + VN ++ ++ Sbjct: 167 VPGQNGQVQITYEDYGTSIDFLPFVVGPGRIRLEVRPEVSEPDPSRAVTVNGTNVTAFTT 226 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R +T VE+ +G T LAGLL+ + P +P +G LFR + R E E+ I Sbjct: 227 RYVETAVEMQAGQTFALAGLLQSRTESTTSRTPFFGSLPYVGTLFRKMQERRNEIELLIL 286 Query: 414 ATPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN 449 TP LV+ + ++ R P + DD + + + + Sbjct: 287 VTPELVEAMDPHEVPRGGPGMNSHSPDDKEFYLYGHIE 324 >gi|264680618|ref|YP_003280528.1| type II and III secretion system protein [Comamonas testosteroni CNB-2] gi|262211134|gb|ACY35232.1| type II and III secretion system protein [Comamonas testosteroni CNB-2] Length = 454 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 110/430 (25%), Positives = 173/430 (40%), Gaps = 35/430 (8%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 RTF L + SV P + + + ++I + + L +P Sbjct: 10 SRTFSLKPLYLLCGLSLSVVTAPVLAQQVPNTGESRAQQATAAREIKLVMGAQHELNLPG 69 Query: 65 DVQDVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V+ + + D T A V + + L G + ++ Q + +++ Sbjct: 70 GVERIAIGDDTIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQ- 128 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYA 177 + LR A S I + G + Q + +A V+LS L + Sbjct: 129 ----RVELRTAKASSLIEQQFA-------GELANAQSADKAKTVDLSSVQLKSNVVQVDV 177 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + + + GF I G S ++ G Sbjct: 178 KVVEFNKTQMKKVG-----------LNLFSTAPNSSGFSFGIFGRGSYGISGGSSTTGAA 226 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F++ D+ + LE R LA PTL A+SGQSA+F SGG+ Sbjct: 227 ANPLTQAFNLLMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP- 285 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRV 353 V + TG ++ YG+ L +PTVLS RI L++ E SE I +N+ +PS Sbjct: 286 VPAGTGMVAIQYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATVPSITT 345 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+ADTTVEL G + V+ GL+ + + +PLL IPILG LF+ F ++E+E+ I Sbjct: 346 RRADTTVELGDGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIV 405 Query: 414 ATPFLVKPVA 423 TP LVKP+A Sbjct: 406 VTPRLVKPLA 415 >gi|297568753|ref|YP_003690097.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] gi|296924668|gb|ADH85478.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] Length = 406 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 107/426 (25%), Positives = 174/426 (40%), Gaps = 66/426 (15%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L + LPP A A D + + ++ + V V+DP Sbjct: 12 LLLLTMCLAVLLPPGAVAAAPDSWRPD-------SLRLEAQSQHVISRDQPIIRVAVADP 64 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134 + +V + S + + L G + L H + L +++ D Sbjct: 65 SIMEVEMISQQELLLTALAPGATQLRLW-HQETEPEMLRVVVVP---------AAPYQDY 114 Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 +I+V R VE+S L QSG +NLL + Sbjct: 115 DIQVR----------------ADIRVVEVSRRALRQSG------------VNLLKDSDSI 146 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 V G I ++G A+D G FV F++ + Sbjct: 147 TVATTA------------PGVLTGIDNQAAG--LPLASDSG--FVPLAQAFNLVAGDAKQ 190 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 ++ LE TLAEP+LT +SG++ASF +GG+ ++G+ S+ D+GV Sbjct: 191 RLLGIISLLESNGFAYTLAEPSLTVMSGKTASFLAGGEVPIPVSHGTSGSVSIEYRDFGV 250 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L TPTVL P RI + + EVSE + +P +RVR+ +TTV+L G + V+ Sbjct: 251 RLQLTPTVLDPRRITIEVSPEVSELDFSAAVSTAGVTVPGFRVRRTETTVQLADGESFVI 310 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSR 429 +GL+ ++ E +P L +PILGA F+++R + E+ + TP LV+P+ + Sbjct: 311 SGLISNENASTVEKVPFLGSLPILGAFFKSTRLQSNDKELIMVVTPHLVRPLERGAQVPL 370 Query: 430 PDDHYS 435 P +HY Sbjct: 371 PGEHYR 376 >gi|319791194|ref|YP_004152834.1| type II and iii secretion system protein [Variovorax paradoxus EPS] gi|315593657|gb|ADU34723.1| type II and III secretion system protein [Variovorax paradoxus EPS] Length = 532 Score = 216 bits (550), Expect = 7e-54, Method: Composition-based stats. Identities = 92/441 (20%), Positives = 172/441 (39%), Gaps = 36/441 (8%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ + ++ ++++P V V + + + V M + ++ G + + + +G + Sbjct: 96 LTLYVGQMALVKMPG-VSRVAIGNGKVMEARVLDGANMLITAQDAGDSTLHVWDKNG-TV 153 Query: 110 LNLDILIE-RDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 L + + D+ + LR S + + + + +++ G +R +++ + Sbjct: 154 RKLKVRVNVADLERIADELREITRGISGVNIRRIGERIIMDGNSLDPAAVERLNTVAQLY 213 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSG 225 A+ I + V ++V I E + L +G + S G + G Sbjct: 214 APAVVSLATAD----------RIRVDRMVDIQVRIVEFSKTALDDLGVRWQSSGDGFNFG 263 Query: 226 PSKSFAADFGGKFVSEGGDFSVKG-----------------VLDRFSFETVLHALERATA 268 A+ + + +G F+ S + ++ L + Sbjct: 264 LFSDIASSGSYRILPDGSAFNTSTPQGTALLGQNRRMPEAYFGIGLSLTSRINLLVQRGN 323 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 LA P L+ SG A F +GG+ +S+ GA SV YGV L+ P G + Sbjct: 324 AFLLASPNLSTRSGGEAKFLAGGEIPLPALSTQ-GAGSVEFKPYGVRLNIKPIADGEGNV 382 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 I TEVS V +P +R+ DT + +G TIVL+GLL + + +G+P L Sbjct: 383 SGSILTEVSSIDRSVAVQGIPGLLIRRTDTEFNVKAGETIVLSGLLSRESTRSSDGVPGL 442 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 K PI+G FR +E E+ + TP +V P R R + +E D + F Sbjct: 443 RKTPIIGRAFRADNDTDKEQEVVVFITPRVVGPADSR--PRIERARELERDVGSNFGTLT 500 Query: 449 NKIYGPKEASEVEGQNYKGAI 469 P + G I Sbjct: 501 EDKSDPNGSRPPAAAADIGGI 521 >gi|85859832|ref|YP_462034.1| general secretion pathway protein D [Syntrophus aciditrophicus SB] gi|85722923|gb|ABC77866.1| general secretion pathway protein D [Syntrophus aciditrophicus SB] Length = 717 Score = 216 bits (550), Expect = 7e-54, Method: Composition-based stats. Identities = 68/269 (25%), Positives = 114/269 (42%), Gaps = 17/269 (6%) Query: 182 KKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++NLL QV ++ TI E+ + G + I S G S + GK Sbjct: 448 RNLLNLLQALDVPARQVLIEATIVELTLTDELKYGVEWFIRNSWDGDSYTLGT--LGKLG 505 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----- 294 E + + FE ++ AL + L+ P L + A+ G Sbjct: 506 LEPLGLTYAFLSRTGQFEALISALAEKSKANILSTPRLMVLDNMEATIQVGKDVPTVTGQ 565 Query: 295 ------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 T S++ + S+ GV+L PT+ + G + L I EVS+ GD Sbjct: 566 ISTLDSVNTTDSTSVSQSIQYRSTGVMLKVKPTINTEGLMTLEITQEVSDIAETPGVGDS 625 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P R+ +T++ G TIVL GL++++ + +PLL IPILG LF+ + +++T Sbjct: 626 PIILTRRINTSIIAAHGQTIVLGGLMQENQSLGESKVPLLGDIPILGNLFKATSKTKDKT 685 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 E+ + TP ++ D + D E Sbjct: 686 ELLVLVTPTIL--TDPNDAVKITDQLRKE 712 >gi|113867004|ref|YP_725493.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16] gi|113525780|emb|CAJ92125.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16] Length = 478 Score = 216 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 97/425 (22%), Positives = 174/425 (40%), Gaps = 41/425 (9%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86 P A S + I + +V L+VP ++ V + + V R Sbjct: 22 PVTTAARTGAQPPSYELPARFGAIELFKGEVRALEVPGTIRRVAIGNGALVSSTVVDGR- 80 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTV 145 + L + +G ++I+ G + + D A + LR + +++E+V +V Sbjct: 81 LLLLAEEIGTTSLIVWNERGVALQGKLRVAPADTADVAQRLRASLGSVRGLKIEVVGPSV 140 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----AGEDQVTLKVT 201 VL G+V + V L +T A S V+NL+ A + V KV Sbjct: 141 VLSGIVD-----PQMVPLIKT----------ATSGLDSVVNLVRADEGDALKKTVHFKVH 185 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----------------FGGKFVSEGGD 244 I E+ R ++++G S +GP +FA + F G Sbjct: 186 IMEITRRGMEKLGIAW--QQSFNGPQIAFAGNPVHTGRYRTLPSTDAATFTDTPSQVAGA 243 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 S + + + ++ LA P L + SG A+F +GG+ + + G Sbjct: 244 ASGFYLGIATTIFSRINLAISDGDAYVLAAPELNSKSGGLATFLAGGEVPIP-KAGAFGT 302 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T V YG+ L+ P V I ++TE+S+ V+ G P++ R+ + + + Sbjct: 303 TDVDYKPYGIKLNIRPAVNVDNVISTTLETEISQIDPSVSFGGFPAFLTRRTTSETSIRA 362 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T+ ++GL+ D + + +PLL IPILG LFR+ F ++++ I TP + P + Sbjct: 363 GETLAISGLVNADASKAVDKVPLLGSIPILGRLFRSDEFRNNKSDLVIFVTPVVYDPASP 422 Query: 425 RDLSR 429 + + Sbjct: 423 ENAAL 427 >gi|221070074|ref|ZP_03546179.1| type II and III secretion system protein [Comamonas testosteroni KF-1] gi|220715097|gb|EED70465.1| type II and III secretion system protein [Comamonas testosteroni KF-1] Length = 454 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 106/420 (25%), Positives = 170/420 (40%), Gaps = 35/420 (8%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 L + S +P + + + ++I + + L +P V+ + + D Sbjct: 20 LLCGLSLSAVTVPALAQQLPNAGESRAQQATAAREIKLVMGAQHELNLPGGVERIAIGDD 79 Query: 75 TKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 A V + + L G + ++ Q + +++ + LR Sbjct: 80 AIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQ-----RVELRT 134 Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNL 187 A S I + G + Q + +A V+LS L + + Sbjct: 135 AKASSLIEQQFA-------GELANAQSADKAKTVDLSSVQLKSNVVQVDVKVVEFNKTQM 187 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 + + GF I G S S ++ G F++ Sbjct: 188 KKVG-----------LNLFSTSPNGSGFSFGIFGRGSYGSSGGSSTTGATANPLTQAFNL 236 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 D+ + LE R LA PTL A+SGQSA+F SGG+ V + TG ++ Sbjct: 237 LMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP-VPAGTGLVAI 295 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELP 363 YG+ L +PTVLS RI L++ E SE I +N+ +PS R+ADTTVEL Sbjct: 296 QYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATIPSITTRRADTTVELG 355 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G + V+ GL+ + + +PLL IPILG LF+ F ++E+E+ I TP LVKP+A Sbjct: 356 DGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIVVTPRLVKPLA 415 >gi|229588195|ref|YP_002870314.1| putative type II secretion system protein [Pseudomonas fluorescens SBW25] gi|229360061|emb|CAY46915.1| putative type II secretion system protein [Pseudomonas fluorescens SBW25] Length = 405 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 105/445 (23%), Positives = 175/445 (39%), Gaps = 65/445 (14%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 +F+ + + P+ A AA N S + + +G LQ PV + + + D Sbjct: 8 LFMHMAWALMLSSLPVGMALAAPGNCSALGQLPA-VVEVGEGLQQELQSPVAITRLAIGD 66 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 P A D+ + D L + Sbjct: 67 PKIA-----------------------------------DVRVNGDRHFLLTGV------ 85 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 + +V T ++++ + + + + + S ++ Sbjct: 86 ----ASGATSLMVWTACASTP---RQSMVFVKGRATSALTSLSLSPSEDPLL-------P 131 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV + EV R LK+ + TG + S + + G F S Sbjct: 132 SQVQTDIRFVEVSRTKLKEASTRLLGTGKNFFLGSPNLLSPSEGVFKLPVSTDSFNVGFG 191 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +++ALER+ TLA P+L A+SGQSASF +GG+ S+ + S+ ++ Sbjct: 192 GGRVSAMINALERSGFAYTLARPSLVAMSGQSASFLAGGEVPVPVPSAGSDTISIEYKEF 251 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTI 368 G+ L TPTV+ RI L++ EVSE + +P+ VR+ DT+V L G + Sbjct: 252 GIRLTLTPTVIDRNRITLKVAPEVSELDYSNAVIIQGIQVPALTVRRTDTSVSLADGESF 311 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD-- 426 V++GL+ + + P L IPILGA FR+S +REE E+ + TP LV+P+A Sbjct: 312 VISGLISTNNRSTISKFPGLGDIPILGAFFRDSNISREEKELLMIVTPHLVQPLAANAQL 371 Query: 427 LSRPDDHYSV--EDDAKAFFFNRVN 449 S P + + + FF N Sbjct: 372 PSLPGEKLRSYDPNWFRLFFLENGN 396 >gi|258624763|ref|ZP_05719694.1| Flp pilus assembly protein [Vibrio mimicus VM603] gi|258582925|gb|EEW07743.1| Flp pilus assembly protein [Vibrio mimicus VM603] Length = 347 Score = 212 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 98/366 (26%), Positives = 157/366 (42%), Gaps = 42/366 (11%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS------------- 169 L+ TL D +I V V D VVL G V + + + L L Sbjct: 2 LKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLKKNVSKVNNHVIET 61 Query: 170 -----QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + A V+N L + +Q+ +K+TIAEV L ++G + G Sbjct: 62 GENNREEALQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLSELGVSYGDIG--- 118 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 GKF ++ DF+ + ++ ++ A + LAEP L+ ISG++ Sbjct: 119 -------GGDVGKFYNKLLDFTAQDIV------AIIAASGNDDIGQVLAEPNLSVISGET 165 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341 ASF GG+ T ++ +YG+ L V I L + EVS Sbjct: 166 ASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLSLLPEVSSLDSVNR 223 Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 ++ + PS + RKA TTV+L G + VLAGLL + ++ IP+L IPILGALF + Sbjct: 224 SDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPILGDIPILGALFSS 283 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 ++ +R++TE+ I AT LV PV + P + D + ++ + P+ + Sbjct: 284 TKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLLRIDLSGVDEPELQRTI 341 Query: 461 EGQNYK 466 + Sbjct: 342 NAGGFN 347 >gi|163801327|ref|ZP_02195226.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4] gi|159174816|gb|EDP59616.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4] Length = 416 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 80/377 (21%), Positives = 144/377 (38%), Gaps = 42/377 (11%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I++ +N+ L + +D++V DV + +YL G+ VI+ G + Sbjct: 37 INMSVNETKHLPLSYVPKDIVVGSDKVVDVNLADSNNLYLIAHEAGKTKVIVKGEEETTE 96 Query: 110 LNLDILIE-RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + + +D +L L +++ V++ + ++G V+ + + +L Sbjct: 97 YVIQVRDTDKDTHNLNKFLESA-GYTDVEAVKVAEKIYINGAVKDKVEKRELNKLVR--- 152 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228 N+ S+ ++ I QV + +T+AEV + I ++G S Sbjct: 153 ---------NAISRYYVDNTTITENRQVRINLTMAEVSKSIDDELGITWGAGWSKIDGVT 203 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 S S + L R L P++ +G +A+F Sbjct: 204 S------------------------KSLSATIGLLSRNNLATVLTRPSIIVTNGSTATFE 239 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAG 346 +GG+ T V DYG+ L F P + I LR S+ I + Sbjct: 240 AGGEVPVLT--YDDENVDVEFKDYGIKLEFKPNIKRDQSIDLRANVSSSQIADFIKLGGN 297 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D P R +T + + G VLAGL+ + Q +P L +PI+G+LF + F Sbjct: 298 DTPQLNTRSVNTELNVNDGDIFVLAGLIDNSQTQAVSKVPFLGYLPIIGSLFTSENFKSN 357 Query: 407 ETEIFIAATPFLVKPVA 423 +TE+ I A V+ Sbjct: 358 KTELMIFAEVNFVENSI 374 >gi|186473164|ref|YP_001860506.1| type II and III secretion system protein [Burkholderia phymatum STM815] gi|184195496|gb|ACC73460.1| type II and III secretion system protein [Burkholderia phymatum STM815] Length = 451 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 162/392 (41%), Gaps = 19/392 (4%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + + + +V +L VP ++ + + + V R + L ++ G + Sbjct: 39 VDADAAQNAAVLDLYKGEVRMLNVPGTIKRIAIGNGKLLTANVVDGR-VMLLAESAGITS 97 Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDS 157 +++ G + + + D+ LR +A +RV+ V +VL G V + + Sbjct: 98 LVVWNERGVALQTTVRVAKGDVGMSAAQLRSVLAAVPGVRVQEVGPNIVLAGSVHREKAA 157 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 +++ + KK + KV I EV R K IG Sbjct: 158 AVKAAIADMTNVIDTTTIDEGDALKKTL-----------HFKVQIMEVTRTGQKDIGIAW 206 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 +GP S F G + G +F + G+ + + ++ LA P L Sbjct: 207 --DSQFAGPQVS-GQGFIGSGAASGANFFLAGIAS--TITSRINFAINNGDAFILAAPEL 261 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SG +ASF +GG+ + + G T V YG+ L+ P V + I +QTE+S Sbjct: 262 NTKSGGTASFLAGGEVPIP-KAGALGTTDVEYKPYGIRLNIRPVVDANDIISATVQTEIS 320 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + V+ G P + R A + + L +G TI ++GL+ D G+P +++PI+G L Sbjct: 321 QIDPSVSYGGFPGFLTRSASSDISLRAGETIAISGLVSADALNGSAGMPFFARLPIIGQL 380 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 FR+ F + +++ I TP + +P + + Sbjct: 381 FRSDSFRAKNSDLVIFVTPLISEPSGEPNTAL 412 >gi|330722019|gb|EGG99947.1| General secretion pathway protein D [gamma proteobacterium IMCC2047] Length = 338 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 63/290 (21%), Positives = 115/290 (39%), Gaps = 12/290 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKF 238 K V+ L+I QV ++ I EV +L +G Q + S+G +F A + Sbjct: 14 KGVVQKLDIR-RKQVLVEAVIVEVNDSVLDDLGVQWQTSTPSNGEFSAFNAIPANISTPA 72 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + G G S ++ ALE T L+ PT+ + + A G + T Sbjct: 73 LPTLGSGLTLGYFKDNSLRALIRALESDTKANVLSTPTIVTLDNEEAEILVGSNVPFITG 132 Query: 299 SSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 S + ++ ++ D G+ L P + + L I+ V Sbjct: 133 SETNESSPTSNPFQTIQRQDIGITLKVKPRINENDSMTLAIEQTVESIATSAVNTADIVT 192 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R T V L +VL GL+ D+ ++ +P+L IP+LG LFR++ E+ + Sbjct: 193 NKRNIKTNVLLEDDQVLVLGGLISDESSNVESKVPVLGHIPVLGRLFRSTSTKVEKKNLM 252 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + P ++ + R D Y+ + + + ++I+ PK+ + Sbjct: 253 VFIHPMILSDLE-RSNKLTSDRYNSMRNKQQQYNGDRDRIFIPKQPPLLP 301 >gi|110632479|ref|YP_672687.1| Flp pilus assembly protein secretin CpaC-like [Mesorhizobium sp. BNC1] gi|110283463|gb|ABG61522.1| Flp pilus assembly protein secretin CpaC-like protein [Chelativorans sp. BNC1] Length = 473 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 97/431 (22%), Positives = 179/431 (41%), Gaps = 49/431 (11%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 + G+++ I + K + L + + + V+DPT AD+ +++GK+ G+ V Sbjct: 75 AQASPAYGQRLIIEIGKGLQLSGTENAESLFVADPTIADIKESPGEAHFIYGKSAGETTV 134 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + G+ + D+++ ++ ++ L + + I + +V G V Q Sbjct: 135 TGVDLGGRTLFQYDMVVIYNLDEMQRMLSQRFPAARITIRSARGSVYATGTVPDQQTYDA 194 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A+E E + +S ++N + +A + L + EV RD L+ G S Sbjct: 195 AIESLEKSIPESV-----------LINEIAVAESPIIRLDIKFMEVSRDRLETYGVNWSA 243 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLT 278 +S + + R + L L++ TLT Sbjct: 244 -------------------LSPSNHYRTGDIRGRGHDVNKFMKLLLDNGVATILSDTTLT 284 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 I + ASF +G + T S + GA S V G + FTP +L G++ L I+ E+ Sbjct: 285 TIGRKKASFMAGEEIAIPTHSVNNGAASFGVDYKFVGFNIGFTPQLLPGGKVSLAIEAEI 344 Query: 337 SEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG----IPLLSK 390 SEP + ++G +P RK +T V+L SG + +LAGL + D + ++ + Sbjct: 345 SEPRQTVQFSSGPVPYVAARKLNTNVDLHSGESFILAGLSRMDTTGAHDQPRRNWGVVGE 404 Query: 391 IPILGALFRNSRFNREETEIFIAATPFL---VKPVA--MRDLSRPDDHYSVEDDAKAFFF 445 +L +L + + +I + TP+ KP A + L R + + + + +K F Sbjct: 405 --VLRSLAGHGSVSAHNRDIAVVVTPYFGASDKPSAADITGLQRSNIEFILSNKSKPFSS 462 Query: 446 NRVNKIYGPKE 456 R IYGP Sbjct: 463 AR---IYGPAG 470 >gi|299532819|ref|ZP_07046206.1| type II and III secretion system protein [Comamonas testosteroni S44] gi|298719043|gb|EFI60013.1| type II and III secretion system protein [Comamonas testosteroni S44] Length = 454 Score = 210 bits (534), Expect = 5e-52, Method: Composition-based stats. Identities = 109/428 (25%), Positives = 174/428 (40%), Gaps = 31/428 (7%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 RTF L S + SV +P + + + ++I + + L +P Sbjct: 10 SRTFSLKSLYLLCSLSLSVVTVPALAQQVPNAGESRAQQATAAREIKLVMGAQHELNLPG 69 Query: 65 DVQDVLVSDPTKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V+ + + D T A V + + L G + ++ Q + +++ Sbjct: 70 GVERIAIGDDTIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQ- 128 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + LR A S I + + + D + V+LS L + Sbjct: 129 ----RVELRTAKASSLIEQQFAGELA-----NAQLADKAKTVDLSSVQLKSNVVQVDVKV 179 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + + + GF I G S + ++ G Sbjct: 180 VEFNKTQMKKVG-----------LNLFSTAPNSSGFSFGIFGRGSYGTGGGSSTTGAAAN 228 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 F++ D+ + LE R LA PTL A+SGQSA+F SGG+ V Sbjct: 229 PLTQAFNLLMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP-VP 287 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRK 355 + TG ++ YG+ L +PTVLS RI L++ E SE I +N+ +PS R+ Sbjct: 288 AGTGMVAIQYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATVPSITTRR 347 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ADTTVEL G + V+ GL+ + + +PLL IPILG LF+ F ++E+E+ I T Sbjct: 348 ADTTVELGDGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIVVT 407 Query: 416 PFLVKPVA 423 P LVKP+A Sbjct: 408 PRLVKPLA 415 >gi|238754119|ref|ZP_04615477.1| Protein transporter HofQ [Yersinia ruckeri ATCC 29473] gi|238707615|gb|EEP99974.1| Protein transporter HofQ [Yersinia ruckeri ATCC 29473] Length = 422 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 5/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L I + + L ++G + I SG S +F + + + R Sbjct: 190 QQVQLAAHIVTISSESLHELGVRWGIPARDSGGSALRINNFNVGLPIQNSAITAGFNIAR 249 Query: 254 FS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 S + L ALE+ + +A P LT Q+AS G Y S G T+V Sbjct: 250 ISGQLLDLELSALEQENQVEIIASPRLTTSHQQTASIKQGTDIPYSVSSGKNGGTTVEFK 309 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368 + + + TP +L G+I L+++ + P + + G+ S ++ T + + G TI Sbjct: 310 EAVLGMEVTPRILGAGKITLKLKISQNMPGMAIKRGENESLAIDKQEIKTQITVNDGETI 369 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + +P+LS IP+LG LF+ + + E+ I TP L+ Sbjct: 370 VLGGIFQQKNSRGANKVPVLSDIPLLGHLFKQTVNAKSRRELVIFITPRLI 420 >gi|119943949|ref|YP_941629.1| type IV pilus secretin PilQ [Psychromonas ingrahamii 37] gi|119862553|gb|ABM02030.1| type IV pilus secretin PilQ [Psychromonas ingrahamii 37] Length = 689 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 4/242 (1%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + KK++ +L+I QV ++ + V + +++G + +T +SS S + Sbjct: 444 AVKKMIQILDIP-VRQVVIEARMVTVDDSVSEELGVKWGMTSTSSSTVDSLNVNLPATDA 502 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + F + + + L ALE +A P +T + Q+A G + Y S Sbjct: 503 AGTIAFKLAKFSNGDILDLELSALESENKAEIIASPRITTANQQTAYIEQGTEIPYVE-S 561 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKAD 357 +S+GATSV + L TP + ++ L ++ V+AG + +K Sbjct: 562 ASSGATSVAFKKAVLSLTVTPQITPDNKVILDLEITQDTVGETVSAGTGEAVAIDTQKIG 621 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V + +G T+VL G+ + +PLL IP LGALFR++ ++E+ I TP Sbjct: 622 TQVLVGNGETLVLGGIYQQRNSIAVSKVPLLGDIPYLGALFRSTNEENTKSELLIFVTPR 681 Query: 418 LV 419 +V Sbjct: 682 IV 683 >gi|260768627|ref|ZP_05877561.1| type II and III secretion system protein [Vibrio furnissii CIP 102972] gi|260616657|gb|EEX41842.1| type II and III secretion system protein [Vibrio furnissii CIP 102972] Length = 387 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 91/392 (23%), Positives = 157/392 (40%), Gaps = 63/392 (16%) Query: 44 IGKGKKISIGLNKVIILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + + I++ N L V + V V+DP A + V + T+ + N G ++++ Sbjct: 20 VHAAEPITLSENAQTSLSVGEQQITRVAVADPNVATIDVLNKNTLLINSHNGGSTSLLVW 79 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 + + + + N++V+ ++ ++ S+ A++ Sbjct: 80 LKNSPSPKAYQLHVVPSLVSTT----------NVQVQT---------DIKVVEVSKSALK 120 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + F + N + +N N AGE Sbjct: 121 EAGFFFGKQSGNTTFGIGNNAALNGGNFAGE----------------------------- 151 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G F+ F+V + + AL TLAEP+L +SG Sbjct: 152 ---------LLSGNSFLPLSNAFNVVIGDMSRGILSTISALNANGFAYTLAEPSLVTMSG 202 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----E 338 +A+F +GG+ Y SS G ++ ++GV L+ +PTV+ RI L++ EVS Sbjct: 203 HTATFLAGGEFPYPKASSD-GDITIEFKEFGVRLNLSPTVMKDNRIMLKVAPEVSELNYN 261 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + +P VR+ DTTV+L G T V++GL+ + P L IPILGA F Sbjct: 262 NAVSTGGVLVPGMSVRRTDTTVQLGDGETFVISGLISSSTMNNSDRFPGLGDIPILGAFF 321 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 ++RF + + E+ + TP LVKP+A P Sbjct: 322 SSTRFEKNDKELMMVVTPHLVKPIAKGATLPP 353 >gi|317049888|ref|YP_004117536.1| type IV pilus secretin PilQ [Pantoea sp. At-9b] gi|316951505|gb|ADU70980.1| type IV pilus secretin PilQ [Pantoea sp. At-9b] Length = 418 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 70/310 (22%), Positives = 131/310 (42%), Gaps = 30/310 (9%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 L+ ++ V+ +++++L D+ RA++ + +L Sbjct: 131 ARSLQAERSLMTPRGSVTVDSRTNSLLLR-------DTPRALQETVRWL----------- 172 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 N L++ E QV L I + + L+++G ++ + Sbjct: 173 ------NALDLPLE-QVELSAHIVTISEEHLRELGVNWGLSPAEEVMQTLRNPQLAIPLA 225 Query: 240 SEGGDF---SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 F G + L ALE+ + I +A P L Q+A+ G + Y+ Sbjct: 226 VSNPAFRMGVTLGHIGGDLLNLELSALEQESQIDIIASPRLFTSHQQTATIKQGTEIPYE 285 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVR 354 S ++GAT++ + + + TP VL GRI L+++ + P +N G+ S + Sbjct: 286 VKSGNSGATAIEFKEAVLGMEVTPVVLGNGRIQLKLRLSQNMPGRSINTGEHQTLSIDKQ 345 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + DT V L G T+ L G+ + Q + +P L K+P++G LFR+ ++ E+ I Sbjct: 346 EIDTQVTLRDGETLALGGIFQQQRAQNENRVPWLGKLPVVGNLFRHQTDEHKKKELVIFI 405 Query: 415 TPFLVKPVAM 424 TP LV+ A+ Sbjct: 406 TPRLVREAAL 415 >gi|308188407|ref|YP_003932538.1| Type IV pilus biogenesis and competence protein pilQ precursor [Pantoea vagans C9-1] gi|308058917|gb|ADO11089.1| Type IV pilus biogenesis and competence protein pilQ precursor [Pantoea vagans C9-1] Length = 423 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 107/237 (45%), Gaps = 6/237 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---AADFGGKFVSEGGDFSVK-G 249 +Q+ L I + + L+++G + + + + D S G + Sbjct: 184 EQIELSAHIVTISEEHLQELGVKWGLQAGDAAVTDILHHPRLDIPLALSSPGISVGMALA 243 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + + L ALE+ I +A P L Q+AS G + Y+ + ++GATS+ Sbjct: 244 RIGGQLLDLELSALEQENQIEIIASPRLFTSHQQTASIKQGTEIPYEVSAGNSGATSIEF 303 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGT 367 + + + TPT+ GRI L+I + P + GD + S ++ +T V + G T Sbjct: 304 KEAVLGMEVTPTISGNGRIQLKIHISQNMPGRSIRTGDSDILSIDKQEIETQVTVSDGQT 363 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + L G+ + + +PLL +P++G LFR R++ E+ I TP LV+ A+ Sbjct: 364 LALGGIFQQQRSHGENKVPLLGNVPLIGGLFRQQSEQRKKRELVIFITPRLVREAAL 420 >gi|292670351|ref|ZP_06603777.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648082|gb|EFF66054.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 426 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 85/346 (24%), Positives = 142/346 (41%), Gaps = 26/346 (7%) Query: 99 VILIGHD----GKQMLNLDILIERDIAHLEMTLRRFIADSNIR--VEMVSDTVVLHGMVR 152 + G D +++ + D L + R V +D G Sbjct: 85 FLAFGADARGENRRVHTYAVRF-ADPEELAHAANLSLTGEGKRAIVSKNNDERENEGSDS 143 Query: 153 TIQDSQRA-VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 QR V+ + L G A + +++++ L+ QV+L+ + + ++ K Sbjct: 144 DSDAQQRVLVDTATNTLLFYGTESEAL-AVREIISALD-REPQQVSLEARVVAISKEAAK 201 Query: 212 QIGFQHSITG---------SSSGPSKSFAADFGGKFVSEGGDFSVK----GVLDRFSFET 258 Q+G S + G + + G S G G+ F + Sbjct: 202 QLGVDWSWSSLPQYPRVQYDRGGSWRVGERNAGTGGTSAPGIIRFGRGPEGLPYEFYYSA 261 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVL 316 + AL + LA P +T I G+ A G + V++S T+ + + G++L Sbjct: 262 AIRALITEGKAKMLARPNVTTIQGREALINIGAEVPVPRVATSNNVTTTGIEYREAGIIL 321 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 +TP V + G I R+ TEVS PV V ++ R ADTTV L +G T+V+ GL+ Sbjct: 322 RYTPRVTADGNIVARVHTEVSTPVY-VEDLKAYRFQKRSADTTVRLKNGETMVIGGLIDS 380 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 D + IP L +P+LGA FR+ R +R ETE+ I T ++ Sbjct: 381 DESRSLSKIPFLGDLPVLGAFFRSVRTSRTETELMIFLTAHVLDET 426 >gi|293393378|ref|ZP_06637690.1| type IV pilus secretin PilQ [Serratia odorifera DSM 4582] gi|291424115|gb|EFE97332.1| type IV pilus secretin PilQ [Serratia odorifera DSM 4582] Length = 411 Score = 206 bits (525), Expect = 6e-51, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 5/232 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +QV L I + R+ L+++G + +T + +F E +V L R Sbjct: 179 EQVQLAAHIVTISREDLRELGVRWGLTADQRAAKRLRIDNFSVGLPLERSAINVGFHLAR 238 Query: 254 FS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 S + L ALE+ A+ +A P L + Q+AS G + Y+ S ++GAT++ Sbjct: 239 VSGRLLDLELMALEQENAVEIIASPRLLTANQQTASIKQGTEIPYEVSSGASGATAIQFR 298 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP +L G I L + + P V +G+ + ++ T V + +G T+ Sbjct: 299 EAVLGMEVTPRILPNGLITLTLHISQNMPGRAVRQGSGEALAIDKQEIKTQVTVKNGETV 358 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 VL G+ + + +P L +P+LG+LF+ S ++ E+ I TP L+K Sbjct: 359 VLGGIFQRQRSHGADKVPGLGDVPLLGSLFKQSSKQHKKRELVIFITPTLIK 410 >gi|311277674|ref|YP_003939905.1| type IV pilus secretin PilQ [Enterobacter cloacae SCF1] gi|308746869|gb|ADO46621.1| type IV pilus secretin PilQ [Enterobacter cloacae SCF1] Length = 412 Score = 206 bits (524), Expect = 7e-51, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + ++ + S G + ++D + F++ G Sbjct: 180 QVELAAHIVTMNEKSLRELGVKWTLADADSPPGRGKFTTLSSDLSVTDATSRAGFNI-GR 238 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ E L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 239 INGRLLEFELSALEQQQQLEIIASPRLLASHLQPASIKQGSEIPYQVSSGDSGATSVEFK 298 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL R+ L+++ + P V+ G++ + ++ +T VE+ SG T+ Sbjct: 299 EAVLGMEVTPTVLDDRRVRLKLRISENMPGQVLQQADGEVLAIDKQEIETQVEVKSGETL 358 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++GIPLL IP LG LFR+ + E E+ + TP ++ Sbjct: 359 ALGGIFSQKNKSARDGIPLLGDIPWLGQLFRHDGKDHERRELVVFITPRII 409 >gi|205357592|ref|ZP_03223780.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205330642|gb|EDZ17406.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 426 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ + S G + Sbjct: 174 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 232 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 233 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQ 291 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 292 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 351 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 352 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 411 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 412 RELVVFITPRLV 423 >gi|261341890|ref|ZP_05969748.1| type IV pili biogenesis protein PilQ [Enterobacter cancerogenus ATCC 35316] gi|288315792|gb|EFC54730.1| type IV pili biogenesis protein PilQ [Enterobacter cancerogenus ATCC 35316] Length = 403 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 138/319 (43%), Gaps = 21/319 (6%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG------- 172 A + + A + + +V HG+ + D+ + +E LS G Sbjct: 84 TAAWQQAQQTRKAQEQAQ-RQLDAPLVSHGISFSYADAGELQKAAEKLLSPKGSLSVDKR 142 Query: 173 RNQYANSSSKKVMNLLNIAGED------QVTLKVTIAEVRRDILKQIGFQHSITGSS--- 223 N+ ++ V++ L E QV L I + L+++G + ++ +S Sbjct: 143 TNRLLVRDNQTVLDTLVRWAEQMDLPIDQVELAAHIVTINEKSLRELGVKWNLAEASEAG 202 Query: 224 -SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G + AD + F++ G +D + L ALE+ + +A P L A Sbjct: 203 RVGEVTALGADLSVANATTHVGFNI-GRIDGRLLDLELSALEQKQQVDIIASPRLLASHM 261 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340 Q AS G + Y+ S +GATSV + + + TP VL GR+ L++ + P V Sbjct: 262 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPVVLPGGRVRLKLHISENMPGQV 321 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G+ + ++ +T VE+ SG T+ L G+ + + +P L +IP LG LFR+ Sbjct: 322 LQQADGETLAIDKQEIETQVEVKSGETLALGGIFSQKNKTGSDSVPGLGRIPWLGQLFRH 381 Query: 401 SRFNREETEIFIAATPFLV 419 + E E+ + TP LV Sbjct: 382 DGKDNERRELVVFITPRLV 400 >gi|322830997|ref|YP_004211024.1| type IV pilus secretin PilQ [Rahnella sp. Y9602] gi|321166198|gb|ADW71897.1| type IV pilus secretin PilQ [Rahnella sp. Y9602] Length = 420 Score = 206 bits (523), Expect = 9e-51, Method: Composition-based stats. Identities = 88/434 (20%), Positives = 181/434 (41%), Gaps = 32/434 (7%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPI--KEANAAVINISDVEIGKGKKISIGLNKVI 58 M+Y+ + ++ + +P A PP+ E ++ + + + +++++ + Sbjct: 1 MKYVNKRI--VLFLLCLCLSPVKAGTPPLISLEFQSSPVGLVLQALADARQLNLVTAPGL 58 Query: 59 ILQVPVDVQDVLVSDP--TKADVVVHSPRTMYLFGKNVGQANVILIG-HDGKQMLNLDIL 115 Q+ V ++DV P D+++ L + G NV+L+ + Q++ I Sbjct: 59 DGQMSVKLKDV----PWQQALDIILQMNH---LTSQLQG--NVLLVSPEEDPQVVQQRIK 109 Query: 116 IERDIAHLEMTLRRF-----IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 D L+ L AD+ ++ G + + + + A + T L + Sbjct: 110 DAADQQALQSPLISLTVPLQYADAKETALSLNAQ---KGSLLSQKGNASADTRTNTLLLR 166 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 + + + +++ QV L I + + L+++G + TG Sbjct: 167 DTQAALDVVAPW--VKEMDLPL-QQVQLAAHIVTMNSESLRELGVRWGFTGEEPITKAVR 223 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASF 287 +F E F+ L S + L ALE+ + +A P L Q+AS Sbjct: 224 MNNFSMGMPVENPIFTAGFNLAHISGRILDLELTALEQEDKVDIIASPRLLTAHMQTASI 283 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NA 345 G + Y+ S ++G+TS+ + + + P + GRI L +Q + P + + Sbjct: 284 KQGTEIPYQVSSGASGSTSIEFKEAVLGMEVMPKIQRDGRIQLALQISQNMPGRSIKQSE 343 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 G+ + ++ T V + +G TIVL G+ + Q+ +P+L IP++G+LF++ N Sbjct: 344 GEALAIDKQEIKTQVTVKNGETIVLGGIFQRKNQKTDTKVPVLGDIPVVGSLFKHQYTNE 403 Query: 406 EETEIFIAATPFLV 419 + E+ I TP L+ Sbjct: 404 QRRELVIFITPTLI 417 >gi|325576567|ref|ZP_08147285.1| type IV pilus secretin PilQ [Haemophilus parainfluenzae ATCC 33392] gi|325161130|gb|EGC73245.1| type IV pilus secretin PilQ [Haemophilus parainfluenzae ATCC 33392] Length = 460 Score = 206 bits (523), Expect = 9e-51, Method: Composition-based stats. Identities = 66/311 (21%), Positives = 119/311 (38%), Gaps = 20/311 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G + + + + S L Q N KK++ L+ E Q+ ++ I + Sbjct: 152 SGSLLSPSGTITFDDRSNVLLIQDDARSLKN--IKKLIAELDKPIE-QIVIEARIVTITD 208 Query: 208 DILKQIGFQHSI---------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + LK++G + I S S + +F G ++ Sbjct: 209 ESLKELGVRWGIFNPTEAAHRVGGSLDANGFSNISNNLNVNFATTVTPAGSLALQVAKIN 268 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + L ALER + +A P L + +SAS G + Y + SV + Sbjct: 269 GRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDTQSVEFREA 328 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + L TP + I L + + P + ++ S ++ +T V G TIVL Sbjct: 329 VLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVL 388 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 G+ D I + + +PLL IP + LF ++ E+ I TP ++K +++R Sbjct: 389 GGVFHDTITKGVDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMARK 448 Query: 431 DDHYSVEDDAK 441 + H+ + K Sbjct: 449 EKHFKQVEKVK 459 >gi|327399337|ref|YP_004340206.1| type IV pilus secretin PilQ [Hippea maritima DSM 10411] gi|327181966|gb|AEA34147.1| type IV pilus secretin PilQ [Hippea maritima DSM 10411] Length = 704 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 64/271 (23%), Positives = 122/271 (45%), Gaps = 33/271 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------- 225 KK++++++ + V + I E+ + +Q+G Q + Sbjct: 434 KKIVSIID-QKKRAVEIDARIVEISKSFERQLGIQWGGNFFNQNINNSKTFIGVGGSSSP 492 Query: 226 --------PSKSFAADFGGKFVSEGGD--------FSVKGVLDRFSFETVLHALERATAI 269 PS+SF+ D + G ++ VL ++ + L E Sbjct: 493 VDVSSGLPPSESFSNDNFVVNLPAGLSDAPTSTVRLAIGNVLANYNLDLKLTMGEIEGYS 552 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + L+ P + + + A +SG + Y+ + ++GATSV+ + + L TP + ++ Sbjct: 553 KVLSTPKVITLDNEPAKISSGQEIPYQESAGASGATSVSFKEATLSLEVTPHITRNDQVI 612 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 L+++ + P + G P + D+TV L +G TIV+ GL++ Q+ G+P L Sbjct: 613 LKLKIKKDSPDYSHSVGGEPPINTNEVDSTVILSNGQTIVIGGLMQSTTQKTVSGVPGLM 672 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420 +IP+LG LF+ R +TE++I TP +VK Sbjct: 673 RIPLLGWLFKTKRIYNPKTELYIFVTPHIVK 703 >gi|16766776|ref|NP_462391.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422046|gb|AAL22350.1| putative transport protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261248643|emb|CBG26481.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995705|gb|ACY90590.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160031|emb|CBW19550.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914512|dbj|BAJ38486.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323131847|gb|ADX19277.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990340|gb|AEF09323.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 412 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ + S G + Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|207858728|ref|YP_002245379.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206710531|emb|CAR34889.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 412 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ + S G + Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|319795562|ref|YP_004157202.1| type II and iii secretion system protein [Variovorax paradoxus EPS] gi|315598025|gb|ADU39091.1| type II and III secretion system protein [Variovorax paradoxus EPS] Length = 533 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 89/456 (19%), Positives = 175/456 (38%), Gaps = 37/456 (8%) Query: 25 KLPPIKEANAAVINISDVEIGKGK---KISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81 PP A + I+ + +++ + +++++++P V V + + + V Sbjct: 69 TPPPQAVDEAELQRIAARATVMQRLPDSLTLYVGQMVLVKMPG-VARVAIGNGKVMEARV 127 Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEM 140 M + ++ G + + + G + D+ + LR S + + Sbjct: 128 LDGANMLITAQDGGDSTLHVWDKSGGIRKVKVRVNVVDLDRIAGELREITRGISGVNIRR 187 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 V + +++ G +R +++ + A+ I + V ++V Sbjct: 188 VGERIIMDGNSLDPAAVERLNTVAQLYAPAVVSLATAD----------RIRVDRMVDIQV 237 Query: 201 TIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG--------- 249 I E ++ L +G + S G + G A+ + + +G F+ Sbjct: 238 RIVEFSKNALDDLGVRWQTSGDGFNFGLFSDIASSGSYRVLPDGSAFNTSTPQGTALLSQ 297 Query: 250 --------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + + + ++ + LA P L+ SG A + +GG+ +S+ Sbjct: 298 NRRTPQAYLGIGLTLGSQINLQVQRGNAFLLASPNLSTRSGGEAKYLAGGEIPLPALSTQ 357 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 GA SV YGV L+ P G I I TEVS V +P +R+ DT Sbjct: 358 -GAGSVEFKPYGVRLNIKPIADGEGNISGSILTEVSSIDPSVAVQGIPGLLIRRTDTEFN 416 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +G TIVL+GLL + + +G+P L P++G FR + +E E+ + TP +V Sbjct: 417 VKTGETIVLSGLLSRESSRASDGLPGLRNTPVIGRAFRADKDIDKEQEVVVFITPRVVDA 476 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 + R + +E D + F P+ A Sbjct: 477 AWSQ--PRVERARQIEQDVGSNFGTLTEDKSDPRGA 510 >gi|194470789|ref|ZP_03076773.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358599|ref|ZP_02657680.2| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194457153|gb|EDX45992.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333155|gb|EDZ19919.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 426 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 174 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 232 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 233 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 291 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 292 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 351 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 352 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 411 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 412 RELVVFITPRLV 423 >gi|194446460|ref|YP_002042738.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405123|gb|ACF65345.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 426 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 174 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 232 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 233 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 291 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 292 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 351 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 352 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 411 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 412 RELVVFITPRLV 423 >gi|301155450|emb|CBW14916.1| predicted fimbrial transporter [Haemophilus parainfluenzae T3T1] Length = 460 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 64/311 (20%), Positives = 118/311 (37%), Gaps = 20/311 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G + + + + S L Q N KK++ L+ E Q+ ++ I + Sbjct: 152 SGSLLSPSGTITFDDRSNVLLIQDDARSVKN--IKKLIAELDKPIE-QIVIEARIVTITD 208 Query: 208 DILKQIGFQHSI---------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + LK++G + I S + +F G ++ Sbjct: 209 ESLKELGVRWGIFNPTEAAHRVSGSLDANGFSNIGDNLNVNFATTVTPAGSLALQVAKIN 268 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + L ALER + +A P L + +SAS G + Y + SV + Sbjct: 269 GRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDTQSVEFREA 328 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + L TP + I L + + P + ++ S ++ +T V G TIVL Sbjct: 329 VLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVL 388 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 G+ D I + + +PLL IP + LF ++ E+ I TP ++K ++++ Sbjct: 389 GGVFHDTITKGIDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMAKK 448 Query: 431 DDHYSVEDDAK 441 + H+ + K Sbjct: 449 EKHFKQVEKVK 459 >gi|304397810|ref|ZP_07379686.1| type IV pilus secretin PilQ [Pantoea sp. aB] gi|304354521|gb|EFM18892.1| type IV pilus secretin PilQ [Pantoea sp. aB] Length = 423 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 117/257 (45%), Gaps = 7/257 (2%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--- 230 A +++ + L++ E Q+ L I + + L+++G + + + + Sbjct: 165 TAAALKETERWIRALDLPLE-QIELSAHIVTISEEHLQELGVKWGLQAGDAAVTDILHHP 223 Query: 231 AADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 D S G + + + L ALE+ I +A P L Q+AS Sbjct: 224 RLDIPLALSSPGISVGMALARIGGQLLDLELSALEQENQIEIIASPRLFTSHQQTASIKQ 283 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347 G + Y+ + ++GATS+ + + + TPT+ GRI L+I+ + P + GD Sbjct: 284 GTEIPYEVSAGNSGATSIEFKEAVLGMEVTPTLSGNGRIQLKIRISQNMPGRSIRTGDSN 343 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + S ++ +T V + G T+ L G+ + + + +PLL +P++G LFR R++ Sbjct: 344 ILSIDKQEIETQVTVSDGQTLALGGIFQQQRSRGENKVPLLGNVPLIGGLFRQQSEQRKK 403 Query: 408 TEIFIAATPFLVKPVAM 424 E+ I TP LV+ A+ Sbjct: 404 RELVIFITPRLVREAAL 420 >gi|194451757|ref|YP_002047512.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359079|ref|ZP_03224213.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194410061|gb|ACF70280.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338987|gb|EDZ25751.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 426 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 174 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 232 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 233 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 291 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 292 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 351 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 352 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 411 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 412 RELVVFITPRLV 423 >gi|238913611|ref|ZP_04657448.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 412 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|321226537|gb|EFX51587.1| Type IV pilus biogenesis protein PilQ [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 389 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ + S G + Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 195 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQ 254 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 375 RELVVFITPRLV 386 >gi|320087902|emb|CBY97664.1| Protein transport protein hofQ Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 412 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|205359546|ref|ZP_03224342.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344340|gb|EDZ31104.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 429 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 177 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 235 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 236 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 294 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 295 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 354 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 355 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 414 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 415 RELVVFITPRLV 426 >gi|62181990|ref|YP_218407.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129623|gb|AAX67326.1| putative transport protein, possibly in biosynthesis of type IV pilin [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716478|gb|EFZ08049.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 412 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVAT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|157148976|ref|YP_001456295.1| outer membrane porin HofQ [Citrobacter koseri ATCC BAA-895] gi|157086181|gb|ABV15859.1| hypothetical protein CKO_04814 [Citrobacter koseri ATCC BAA-895] Length = 412 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 7/232 (3%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKG 249 +QV L I + L+++G + ++ + S G S A+D + F++ G Sbjct: 179 EQVELAAHIVTINEKSLRELGVKWTLADAQLAGSPGQVTSLASDLSVAAATSRVGFNI-G 237 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 ++ + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 238 RINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEF 297 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367 + + + TPTVL GRI L++ + P V+ G++ + ++ DT VE+ SG T Sbjct: 298 KEAVLGMEVTPTVLPKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIDTQVEVKSGET 357 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G+ + K+ +PLL IP LG+LF + E E+ + TP LV Sbjct: 358 LALGGIFSRKNKSAKDSVPLLGDIPWLGSLFSHDGKENERRELVVFITPRLV 409 >gi|16762799|ref|NP_458416.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144286|ref|NP_807628.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053391|ref|ZP_03346269.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416770|ref|ZP_03349914.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426742|ref|ZP_03359492.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646579|ref|ZP_03376632.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852697|ref|ZP_03382229.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25324276|pir||AB1000 type II secretion system protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505105|emb|CAD08126.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139923|gb|AAO71488.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 412 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|161505946|ref|YP_001573058.1| outer membrane porin HofQ [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867293|gb|ABX23916.1| hypothetical protein SARI_04127 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 400 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ + G Sbjct: 148 NRTALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADAQQAGAVGDVTM 206 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 207 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 265 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 266 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 325 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP LG LFR+ E Sbjct: 326 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGRDSVPLLGDIPWLGQLFRHDGKEDER 385 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 386 RELVVFITPRLV 397 >gi|170721354|ref|YP_001749042.1| general secretion pathway protein D [Pseudomonas putida W619] gi|169759357|gb|ACA72673.1| general secretion pathway protein D [Pseudomonas putida W619] Length = 745 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 72/313 (23%), Positives = 119/313 (38%), Gaps = 14/313 (4%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V+++++S R + + + L+ QV ++ I EV+ Sbjct: 434 DGSVKSLEESVRITAQKSSNQLLVRTRPAQWKEIESAIKRLDSP-PLQVQIETRILEVKL 492 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFETVLH 261 +G Q + + S + A+ G + G G F + + L Sbjct: 493 TGDLDLGVQWYLGRLAGNSSSTTVANESGSQGALGAGGVALGSASMFYSFVSSNLQVALR 552 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDYGVVL 316 ALE + L+ P+L ++ Q A G T S T +SV GV+L Sbjct: 553 ALETRGLTQVLSAPSLVVLNNQQAQIQVGDNIPISQTTVNTSDSDTTLSSVEYVQTGVIL 612 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 P + G + + IQ +VS+ P R T V + SG T++L GL+ Sbjct: 613 DVVPRINPGGLVYMDIQQQVSDADDSAVTTTQPNPRISSRAVSTQVAVQSGQTVLLGGLI 672 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 K D Q +P LS IP LG LF ++ +R+ TE+ + TP +V D Sbjct: 673 KQDNGQSDTRVPGLSSIPGLGWLFGSTSKSRDRTELIVLITPRVVNNPEQARQVTADYRQ 732 Query: 435 SVEDDAKAFFFNR 447 ++ + R Sbjct: 733 QMQVLREQAALKR 745 >gi|322629821|gb|EFY26594.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322659197|gb|EFY55449.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|323227365|gb|EGA11531.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323245960|gb|EGA29947.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250737|gb|EGA34615.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323261394|gb|EGA44980.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] Length = 412 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|200387767|ref|ZP_03214379.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604865|gb|EDZ03410.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 389 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ + S G + Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 195 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 375 RELVVFITPRLV 386 >gi|56415404|ref|YP_152479.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364334|ref|YP_002143971.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129661|gb|AAV79167.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095811|emb|CAR61383.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 412 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|205360346|ref|ZP_02682767.2| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350396|gb|EDZ37027.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 389 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ + S G + Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 195 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 375 RELVVFITPRLV 386 >gi|213585294|ref|ZP_03367120.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 412 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +G TSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGTTSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|197265045|ref|ZP_03165119.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243300|gb|EDY25920.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 426 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 174 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 232 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 233 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 291 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL G I L++ + P V+ G+ Sbjct: 292 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGLIRLKLHISQNVPGQVLQQADGE 351 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 352 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 411 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 412 RELVVFITPRLV 423 >gi|289824820|ref|ZP_06544263.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 389 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 195 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 375 RELVVFITPRLV 386 >gi|156936449|ref|YP_001440365.1| outer membrane porin HofQ [Cronobacter sakazakii ATCC BAA-894] gi|156534703|gb|ABU79529.1| hypothetical protein ESA_04350 [Cronobacter sakazakii ATCC BAA-894] Length = 390 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + + L+++G + S + + + +AD + F++ G Sbjct: 158 QVELAAHIVTINQQSLRELGVKWSTADADGPTTLYHPTTISADLAVANATTRLGFNI-GR 216 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +D E L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 217 IDGRMLEFELSALEQKQKVEIIASPRLLAAHQQPASIKQGSEIPYQVSSGESGATSVEFK 276 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPT+ GRI L+++ + P + G++ + ++ +T VE+ G T+ Sbjct: 277 EAVLGMEVTPTIGQDGRIKLKLRISQNMPGQALQQADGEVLAIDKQEIETQVEVKDGETL 336 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + + E +P+L IP+ G+LFR+ + E+ E+ + TP ++ Sbjct: 337 ALGGIFQQKNKAGNEQVPVLGNIPLFGSLFRHDGKDNEKRELVVFITPRII 387 >gi|322614138|gb|EFY11074.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618029|gb|EFY14922.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625356|gb|EFY22182.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322632290|gb|EFY29041.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636359|gb|EFY33066.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643215|gb|EFY39784.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644783|gb|EFY41319.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651192|gb|EFY47576.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654940|gb|EFY51255.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322663102|gb|EFY59306.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668588|gb|EFY64741.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674608|gb|EFY70701.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678186|gb|EFY74247.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682557|gb|EFY78578.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684270|gb|EFY80276.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192175|gb|EFZ77407.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196399|gb|EFZ81551.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201800|gb|EFZ86863.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206342|gb|EFZ91303.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211936|gb|EFZ96763.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216841|gb|EGA01564.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222240|gb|EGA06623.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323228183|gb|EGA12314.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233550|gb|EGA17643.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323236988|gb|EGA21055.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243797|gb|EGA27813.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323255748|gb|EGA39498.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323267633|gb|EGA51115.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268514|gb|EGA51981.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 389 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 195 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 375 RELVVFITPRLV 386 >gi|270264426|ref|ZP_06192692.1| putative outer membrane porin HofQ [Serratia odorifera 4Rx13] gi|270041562|gb|EFA14660.1| putative outer membrane porin HofQ [Serratia odorifera 4Rx13] Length = 414 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 5/231 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + + L+++G + + DF E S L R Sbjct: 183 QVQLAAHIVTINSESLRELGVRWGLAPDEGAAKPLRMGDFNVSLPLERSAVSAGFHLARI 242 Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + L ALE+ + +A P L Q+AS G + Y+ S S+GATS+ + Sbjct: 243 GGRLLDLELMALEQENRVEIIASPRLLTAHQQTASIKQGTEIPYEVKSGSSGATSMEFKE 302 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIV 369 + + TP +L GRI L +Q + P ++ D + ++ T V + G TIV Sbjct: 303 AVLGMEVTPKILPNGRITLTLQISQNMPGRSISRADGEALAIDKQEIKTQVTVKDGETIV 362 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G+ + Q + +P L IP+LG+LF+ S + E+ I TP L+K Sbjct: 363 LGGVFQRQSAQGADKVPGLGDIPLLGSLFKQSTKQHKRRELVIFITPTLIK 413 >gi|330862294|emb|CBX72455.1| hypothetical protein YEW_HH31870 [Yersinia enterocolitica W22703] Length = 271 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 88/263 (33%), Positives = 144/263 (54%), Gaps = 20/263 (7%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 MN + + G +QV +K+TIAEV +D + IG S G+ SG + F + KF ++G Sbjct: 1 MNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSGSFQFFKLNGSNKFNAKG-- 58 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++HA+ + R LAEP L+ +SG+SASF GG+ V+++ + Sbjct: 59 -----------ISALVHAINDDSIARVLAEPNLSVLSGESASFLVGGELP--LVNTTANS 105 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDM-PSYRVRKADTTVE 361 T +T +G+ L+ V + RI +++ EVS V ++ GD PS+R RKA TT+E Sbjct: 106 TVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNIDGGDAYPSFRTRKAATTLE 165 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L G + +L GL+ ++ + IP + IPILGA FRN+ + +TE+ + AT LV+P Sbjct: 166 LGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFRNAETRKNQTELVVVATVNLVRP 225 Query: 422 VAMRDLSRPDDHYSVEDDAKAFF 444 V+ +++ P ++ + FF Sbjct: 226 VSEKEVELP--NFMHTSTLERFF 246 >gi|195873801|ref|ZP_02699139.2| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197248588|ref|YP_002148409.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|195632392|gb|EDX50876.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212291|gb|ACH49688.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 389 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 195 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 375 RELVVFITPRLV 386 >gi|204928849|ref|ZP_03220048.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322282|gb|EDZ07480.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 389 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ + S G + Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 195 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P ++ G+ Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQILQQADGE 314 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 375 RELVVFITPRLV 386 >gi|310765643|gb|ADP10593.1| Protein transport protein hofQ precursor [Erwinia sp. Ejp617] Length = 414 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 66/313 (21%), Positives = 135/313 (43%), Gaps = 31/313 (9%) Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI--QDSQRAVELSETFLSQSGR 173 + D A + +L+ R+ ++ L ++ +D+++A+ +E ++ Q Sbjct: 123 VHADAASVNTSLQ----HERARLMSARGSITLDSRTNSLLLRDTEKALAQTEHWVHQ--- 175 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKS 229 L++ E Q+ L I + + L+++G ++G + + + Sbjct: 176 --------------LDVPLE-QIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQ 220 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 D + F++ LD + L ALE +A P L Q+AS Sbjct: 221 LRVDLATGRPAGVVGFTLA-KLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQ 279 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347 G + Y+ + ++G+T++ + + + TP V + GRI L++ + P + +G+ Sbjct: 280 GTEIPYEVSTGNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENE 339 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ DT V L G T+ L G+ + +P L IP+LG LFR+ ++ Sbjct: 340 VLTIDKQEIDTQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKR 399 Query: 408 TEIFIAATPFLVK 420 E+ I TP L++ Sbjct: 400 RELVIFITPRLIR 412 >gi|68249035|ref|YP_248147.1| competence protein E [Haemophilus influenzae 86-028NP] gi|148825285|ref|YP_001290038.1| competence protein E [Haemophilus influenzae PittEE] gi|59939227|gb|AAX12385.1| ComE [Haemophilus influenzae] gi|68057234|gb|AAX87487.1| competence protein E [Haemophilus influenzae 86-028NP] gi|148715445|gb|ABQ97655.1| competence protein E [Haemophilus influenzae PittEE] Length = 445 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVK 420 ++K Sbjct: 426 HILK 429 >gi|283480139|emb|CAY76055.1| Protein transport protein hofQ precursor [Erwinia pyrifoliae DSM 12163] Length = 414 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 136/313 (43%), Gaps = 31/313 (9%) Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI--QDSQRAVELSETFLSQSGR 173 + D A + +L+R R+ ++ L ++ +D+++A+ +E ++ Q Sbjct: 123 VHADAASVNTSLQR----ERARLMSARGSITLDSRTNSLLLRDTEKALAQTEHWVHQ--- 175 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKS 229 L++ E Q+ L I + + L+++G ++G + + + Sbjct: 176 --------------LDVPLE-QIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQ 220 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 D + F++ LD + L ALE +A P L Q+AS Sbjct: 221 LRVDLATGRPAGVVGFTLA-KLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQ 279 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347 G + Y+ + ++G+T++ + + + TP V + GRI L++ + P + +G+ Sbjct: 280 GTEIPYEVSTGNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENE 339 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ DT V L G T+ L G+ + +P L IP+LG LFR+ ++ Sbjct: 340 VLTIDKQEIDTQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKR 399 Query: 408 TEIFIAATPFLVK 420 E+ I TP L++ Sbjct: 400 RELVIFITPRLIR 412 >gi|319775638|ref|YP_004138126.1| competence protein E [Haemophilus influenzae F3047] gi|317450229|emb|CBY86445.1| competence protein E [Haemophilus influenzae F3047] Length = 445 Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVK 420 ++K Sbjct: 426 HILK 429 >gi|301169135|emb|CBW28732.1| predicted fimbrial transporter [Haemophilus influenzae 10810] Length = 445 Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IPI+ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPIIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVK 420 ++K Sbjct: 426 HILK 429 >gi|238750896|ref|ZP_04612393.1| Type II/III secretion system protein [Yersinia rohdei ATCC 43380] gi|238710810|gb|EEQ03031.1| Type II/III secretion system protein [Yersinia rohdei ATCC 43380] Length = 316 Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 143/321 (44%), Gaps = 29/321 (9%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 S AD + ++ ++ KN G A IL + K + +++ I ++ Sbjct: 2 SAAAIADYELVGKNSVIVYAKNEGVAEFILFDQNHKPITKSVVMVNNIITLATKRIQAEY 61 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS----QSGRNQYANSSS-KKVMN 186 S I + + ++ +L G V + + V + + + NQY N++ ++N Sbjct: 62 PGSIIDISKIGNSYILTGTVESEEARDTIVNIVGEAIGSKKNKGSDNQYINTNDYPGIVN 121 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 + + +QV +K+TIAEV +D + IG S G++ G + F F+ Sbjct: 122 KIKLPQSNQVNVKLTIAEVTKDFTENIGINWSTIGNNVGAFQFF-------------QFN 168 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 KG+ T++HA+ R LAEP L+ +SG++ASF GG+ S+S Sbjct: 169 AKGI------STLVHAINDDAIARVLAEPNLSVLSGETASFLVGGEIPI--ASTSQNGVK 220 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELP 363 + ++G+ L+ V RI + + EVS N PS R RKA TT+EL Sbjct: 221 IDYKEFGIKLNIGAKVNDKKRIRIMLNEEVSSIGKSFNVTGGDSYPSLRTRKAATTLELG 280 Query: 364 SGGTIVLAGLLKDDIQQLKEG 384 G + +L GL+ + ++ + Sbjct: 281 DGESFILGGLISSNERESLKK 301 >gi|260582299|ref|ZP_05850092.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae NT127] gi|260094667|gb|EEW78562.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae NT127] Length = 447 Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 103/251 (41%), Gaps = 17/251 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVKPVAMRDL 427 ++K D+ Sbjct: 426 HILKAGETLDV 436 >gi|205356871|ref|ZP_02343070.2| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325673|gb|EDZ13512.1| protein transport protein HofQ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 389 Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ + S G + Sbjct: 137 NRAALAELEKWVSQMDLPVA-QVELVAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 195 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 196 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEEER 374 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 375 RELVVFITPRLV 386 >gi|330957039|gb|EGH57299.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. maculicola str. ES4326] Length = 692 Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 113/264 (42%), Gaps = 14/264 (5%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + Q +++++ L+I QV ++ I E D K++G + ++SG S Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYDKELGVRWGGATNTSGSSNWSTG 485 Query: 233 DFGGKFVSEGGDF------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G + F + + + + L A+E+ +++P + Sbjct: 486 TAAGGSTANSSTFVDMGAANATSGIGLGFLTNNTMLDLELTAMEKTGNGEIVSQPKVVTS 545 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 ++A G + Y+ SSS+GAT+V+ + + L TP + RI + ++ EP Sbjct: 546 DKETAKILKGTEVPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPD 604 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +P + + + V + G TIV+ G+ + + + +P L +P LG LFR Sbjct: 605 YVNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKSVDKVPFLGDVPYLGRLFRR 664 Query: 401 SRFNREETEIFIAATPFLVKPVAM 424 + ++E+ + TP ++ A+ Sbjct: 665 DVVSESKSELLVFLTPRIMNNQAI 688 >gi|229846521|ref|ZP_04466629.1| competence protein E [Haemophilus influenzae 7P49H1] gi|229810614|gb|EEP46332.1| competence protein E [Haemophilus influenzae 7P49H1] Length = 445 Score = 202 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVK 420 ++K Sbjct: 426 HILK 429 >gi|260599692|ref|YP_003212263.1| outer membrane porin HofQ [Cronobacter turicensis z3032] gi|260218869|emb|CBA34224.1| Protein transport protein hofQ [Cronobacter turicensis z3032] Length = 390 Score = 202 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + + L+++G + S + + +AD + F++ G Sbjct: 158 QVELAAHIVTINQQSLRELGVKWSTADAEGATKLYHPTTVSADLAVANATTRLGFNI-GR 216 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +D E L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 217 IDGRMLEFELSALEQKQKVEIIASPRLLAAHQQPASIKQGSEIPYQVSSGESGATSVEFK 276 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPT+ GRI L+++ + P + G++ + ++ +T VE+ G T+ Sbjct: 277 EAVLGMEVTPTIGQGGRIRLKLRISQNMPGQALQQADGEVLAIDKQEIETQVEVKDGETL 336 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + + E +P+L IP+LG+LFR+ ++E+ E+ + TP ++ Sbjct: 337 ALGGIFQQKNKTGNEQVPVLGNIPLLGSLFRHDGKDKEKRELVVFITPRII 387 >gi|85705572|ref|ZP_01036670.1| type II and III secretion system protein [Roseovarius sp. 217] gi|85669997|gb|EAQ24860.1| type II and III secretion system protein [Roseovarius sp. 217] Length = 441 Score = 202 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 93/450 (20%), Positives = 181/450 (40%), Gaps = 42/450 (9%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 + ++ +++++ K I+L V +V V VSD T AD + S +++FGK VG Sbjct: 22 LPSVLSSPASAQERLTVEQGKSILLPVGDNVDTVFVSDTTVADASISSNNRVFVFGKEVG 81 Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 + ++I + +++ ++ + ++ I VE ++++ G+V + + Sbjct: 82 ETSLIATSTYADSDMTFTVVVTHKLSEIRSVIQSRFPGEQIAVESSRGSLMITGIVSSDR 141 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 + V E+ ++ +++ L +A + + L+V + EV R ++ G Sbjct: 142 VRETLVTTLESAAPET-----------TIIDRLRVASSNIIRLEVKLLEVSRTQVENFGI 190 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + T +++G F +S G K S L L E Sbjct: 191 DWNATVTANGF---FLGTSNRGVLSVG-----KSDTAESSLNAALDVLISNGIATIAQET 242 Query: 276 TLTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 L+ ++G+ A F+ GG+ T SS G + G L FTP++ ++ L Sbjct: 243 VLSTVNGEEALFSVGGEIPIPTFIPVDSGSSDGNFQLDFKFIGTSLSFTPSIAPGNKLRL 302 Query: 331 RIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL--KEGI 385 I + +S + VN P+ R T VEL V+AG+ ++D ++ Sbjct: 303 LIDSTISSQGQTSSTVNGNVFPNLNTRSFRTNVELSDRQPFVIAGVTRNDTSNDLRQDRG 362 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFL--VKPVAMRDLSRPDDHYSVEDDAKAF 443 LS+I + +L R E+ + TP L ++P ++++ + + Sbjct: 363 TGLSRI--VDSLLGQDRVTANSQELVVIVTPLLTELEPQSIQERLP-----APLSNLGFI 415 Query: 444 FFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473 NR ++ E N GA GF Y Sbjct: 416 LSNRDSRTAITHE----PRYNAFGAAGFRY 441 >gi|259910041|ref|YP_002650397.1| putative outer membrane porin HofQ [Erwinia pyrifoliae Ep1/96] gi|224965663|emb|CAX57195.1| outer membrane porin [Erwinia pyrifoliae Ep1/96] Length = 406 Score = 202 bits (515), Expect = 8e-50, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 136/313 (43%), Gaps = 31/313 (9%) Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI--QDSQRAVELSETFLSQSGR 173 + D A + +L+R R+ ++ L ++ +D+++A+ +E ++ Q Sbjct: 115 VHADAASVNTSLQR----ERARLMSARGSITLDSRTNSLLLRDTEKALAQTEHWVHQ--- 167 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKS 229 L++ E Q+ L I + + L+++G ++G + + + Sbjct: 168 --------------LDVPLE-QIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQ 212 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 D + F++ LD + L ALE +A P L Q+AS Sbjct: 213 LRVDLATGRPAGVVGFTLA-KLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQ 271 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347 G + Y+ + ++G+T++ + + + TP V + GRI L++ + P + +G+ Sbjct: 272 GTEIPYEVSTGNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENE 331 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ DT V L G T+ L G+ + +P L IP+LG LFR+ ++ Sbjct: 332 VLTIDKQEIDTQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKR 391 Query: 408 TEIFIAATPFLVK 420 E+ I TP L++ Sbjct: 392 RELVIFITPRLIR 404 >gi|224585282|ref|YP_002639081.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469810|gb|ACN47640.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 379 Score = 202 bits (515), Expect = 8e-50, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + ++ ++ G + ++D + F++ G Sbjct: 147 QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVATLSSDLSVAAATSRVGFNI-GR 205 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 206 INGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 265 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ SG T+ Sbjct: 266 EAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETL 325 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + + +PLL IP LG LFR+ E E+ + TP LV Sbjct: 326 ALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 376 >gi|289806224|ref|ZP_06536853.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 295 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 43 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 101 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 102 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 160 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 161 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 220 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 221 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 280 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 281 RELVVFITPRLV 292 >gi|145630388|ref|ZP_01786169.1| competence protein E [Haemophilus influenzae R3021] gi|144984123|gb|EDJ91560.1| competence protein E [Haemophilus influenzae R3021] Length = 447 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVK 420 ++K Sbjct: 426 HILK 429 >gi|161616525|ref|YP_001590490.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365889|gb|ABX69657.1| hypothetical protein SPAB_04341 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 389 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ + +K ++ +++ QV L I + L+++G + ++ ++ G + Sbjct: 137 NRAVLAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT 195 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ + R + L ALE+ + +A P L A Q AS Sbjct: 196 LSSDLSVAAATSRVGFNIGRISGRL-LDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 374 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 375 RELVVFITPRLV 386 >gi|145640400|ref|ZP_01795984.1| competence protein E [Haemophilus influenzae R3021] gi|145274986|gb|EDK14848.1| competence protein E [Haemophilus influenzae 22.4-21] Length = 445 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVK 420 ++K Sbjct: 426 HILK 429 >gi|329122312|ref|ZP_08250900.1| competence protein E [Haemophilus aegyptius ATCC 11116] gi|327473873|gb|EGF19290.1| competence protein E [Haemophilus aegyptius ATCC 11116] Length = 445 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 100/244 (40%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + + S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEGVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVK 420 ++K Sbjct: 426 HILK 429 >gi|145628805|ref|ZP_01784605.1| competence protein E [Haemophilus influenzae 22.1-21] gi|145638655|ref|ZP_01794264.1| competence protein E [Haemophilus influenzae PittII] gi|144979275|gb|EDJ88961.1| competence protein E [Haemophilus influenzae 22.1-21] gi|145272250|gb|EDK12158.1| competence protein E [Haemophilus influenzae PittII] gi|309750149|gb|ADO80133.1| Outer membrane secretin ComE [Haemophilus influenzae R2866] Length = 445 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVK 420 ++K Sbjct: 426 HILK 429 >gi|205354888|ref|YP_002228689.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274669|emb|CAR39723.1| type II secretion system protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326630034|gb|EGE36377.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 412 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKS 229 N+ A + +K ++ +++ QV L I + L+++G + ++ + S G + Sbjct: 160 NRAALAELEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LSSDLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGGIPWLGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|319898044|ref|YP_004136241.1| competence protein e [Haemophilus influenzae F3031] gi|317433550|emb|CBY81934.1| competence protein E [Haemophilus influenzae F3031] Length = 445 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 108/256 (42%), Gaps = 18/256 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS---- 227 KK+++ ++ E Q+ ++ I + + LK++G + I GS +G S Sbjct: 175 KKLISEMDKPIE-QIAIEARIVTITDESLKELGIRWGIFNPTENARRVAGSLAGNSFENI 233 Query: 228 -KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + +F G ++ + L ALER + +A P L + +SAS Sbjct: 234 ADNLNVNFATTATPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSAS 293 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVN 344 G + Y ++ SV + + L TP + I L + + P + Sbjct: 294 IKQGTEIPYVVSNTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYG 353 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 ++ S ++ +T V G TIVL G+ D I + ++ +PLL IP++ LF Sbjct: 354 QNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESER 413 Query: 405 REETEIFIAATPFLVK 420 ++ E+ I TP ++K Sbjct: 414 HQKRELVIFVTPHILK 429 >gi|309972408|gb|ADO95609.1| Outer membrane secretin ComE [Haemophilus influenzae R2846] Length = 445 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVK 420 ++K Sbjct: 426 HILK 429 >gi|90407251|ref|ZP_01215438.1| type IV pilus biogenesis protein PilQ [Psychromonas sp. CNPT3] gi|90311674|gb|EAS39772.1| type IV pilus biogenesis protein PilQ [Psychromonas sp. CNPT3] Length = 739 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 69/288 (23%), Positives = 115/288 (39%), Gaps = 18/288 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + D T + + K ++ +L+I QV ++ + V Sbjct: 449 SGDVSLLSDRGSVNVDKRTNMLLLKDTARVIKAVKNMIKVLDIP-VRQVVIEARMVTVND 507 Query: 208 DILKQIGFQHSITGSSSGPSKSFAAD------------FGGKFVSEGG--DFSVKGVLDR 253 + +++G + + + S S + D V G F + + Sbjct: 508 SVGEELGIRWGNSNVNGDLSTSGSLDGLTNGSLDERLNVNLPVVGAAGRIAFRIAKLASG 567 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + L ALE+ +A P +T Q+A G + Y S+S+GAT+V+ Sbjct: 568 KILDLELSALEKENKAEIIASPRITTADQQTAYIEQGTEIPYVE-SASSGATAVSFKKAV 626 Query: 314 VVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + L TP + +I L I + VI G S ++ T V + +G TIVL Sbjct: 627 LSLQVTPQITPDNKIILDLVITQDSKGDVIPTGLGQAVSINTQEIKTQVLVGNGETIVLG 686 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ + I + +P L IP LGALFR + ++E+ I TP LV Sbjct: 687 GIYQQRIIDTVQKVPFLGDIPFLGALFRTTIKENRKSELLIFVTPRLV 734 >gi|145634568|ref|ZP_01790277.1| competence protein E [Haemophilus influenzae PittAA] gi|229844405|ref|ZP_04464545.1| competence protein E [Haemophilus influenzae 6P18H1] gi|145268113|gb|EDK08108.1| competence protein E [Haemophilus influenzae PittAA] gi|229812654|gb|EEP48343.1| competence protein E [Haemophilus influenzae 6P18H1] Length = 445 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLAGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVK 420 ++K Sbjct: 426 HILK 429 >gi|16272383|ref|NP_438596.1| competence protein E [Haemophilus influenzae Rd KW20] gi|260580502|ref|ZP_05848330.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae RdAW] gi|1169008|sp|P31772|COME_HAEIN RecName: Full=Competence protein E; AltName: Full=DNA transformation protein ComE; Flags: Precursor gi|1573410|gb|AAC22094.1| competence protein E (comE) [Haemophilus influenzae Rd KW20] gi|260092844|gb|EEW76779.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae RdAW] Length = 445 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVK 420 ++K Sbjct: 426 HILK 429 >gi|87120710|ref|ZP_01076603.1| general secretion pathway protein D [Marinomonas sp. MED121] gi|86163938|gb|EAQ65210.1| general secretion pathway protein D [Marinomonas sp. MED121] Length = 616 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 80/354 (22%), Positives = 148/354 (41%), Gaps = 27/354 (7%) Query: 96 QAN-VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 + N +IL G G+ D++I+ DI + + ++I V+D +L G+V I Sbjct: 231 RTNRLILKGKPGELNQIKDLIIKLDIPAEKTSRLQYIPLQYADATKVAD--LLKGVVGDI 288 Query: 155 QDSQ-RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------QVTLKVTIAEVRR 207 + + A L + N +S VM+ + + QV ++ I E+ Sbjct: 289 EKKEGNAPTLETNIQADEDLNALLVNSEPGVMSEIYSVLKQIDVPRAQVLIEAVIVEITV 348 Query: 208 DILKQIGFQHSITGS----------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 +++G Q I GS S+G S + A + +L +F Sbjct: 349 TDEEELGVQWLIGGSDEIISGTNFTSAGSSANTIASSINSSTANTLATGGTAILGDTNFG 408 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYG 313 ++ AL+ T L+ P + + Q A G ++T S + + + D G Sbjct: 409 AIIQALQSKTNSNLLSTPKILTLDNQEARILVGETRPFQTGEYSEDSDSTFVTTSREDVG 468 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-RKADTTVELPSGGTIVLAG 372 + L TP + S + + + V A D+ + R+ +T V TIVL G Sbjct: 469 LTLKVTPHINSGNEVKMEVFQTVE--SASDEASDLGTITTVREVETVVIAGDRQTIVLGG 526 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L++D+I + K+ +P L +P +G LFR+S F+ ++ + + P +++ A D Sbjct: 527 LIQDNITESKQKVPFLGDLPFVGGLFRSSSFSIDKKNLLVFIRPTIIRGKAKAD 580 >gi|145636296|ref|ZP_01791965.1| competence protein E [Haemophilus influenzae PittHH] gi|145270461|gb|EDK10395.1| competence protein E [Haemophilus influenzae PittHH] Length = 445 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVK 420 ++K Sbjct: 426 HILK 429 >gi|242237793|ref|YP_002985974.1| outer membrane porin HofQ [Dickeya dadantii Ech703] gi|242129850|gb|ACS84152.1| type IV pilus secretin PilQ [Dickeya dadantii Ech703] Length = 426 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 109/254 (42%), Gaps = 7/254 (2%) Query: 178 NSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 +S+ +++ + L++ + QV L I + + LK +G + + +F Sbjct: 169 SSALEQIRSWLDVLDKPLAQVQLAAHIVTISSEHLKALGVNWGLDAGDATKQALRMNNFN 228 Query: 236 GKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 E + L R + + L ALE+ + +A P L Q+AS G + Sbjct: 229 INLPVETPTVNAGFHLARLNGRLLDLELMALEQEDEVEIIASPRLFTAHQQTASIKQGTE 288 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPS 350 Y+ S ++G+TS+ + + + TP +L G I L + + P + G+M + Sbjct: 289 IPYQVSSGASGSTSIEFKEAVLGMEVTPRILQGGFITLNLLISQNMPGRSIKQGEGEMLA 348 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ T V + G TIVL G+ + + + +P L +P +G LF +S E+ Sbjct: 349 IDKQEIQTQVTVKDGETIVLGGIFQQQKNRTERKVPGLGALPGIGRLFSSSDRQNTRREL 408 Query: 411 FIAATPFLVKPVAM 424 I TP L++ Sbjct: 409 VIFITPTLIQASLP 422 >gi|325498932|gb|EGC96791.1| outer membrane porin HofQ [Escherichia fergusonii ECD227] Length = 385 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKS 229 N+ A ++ + ++ +++ QV L I + L+++G + + G + Sbjct: 133 NKTALAALEHWISEMDVPVG-QVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTT 191 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 192 LSSDLAVATATTQVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 250 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ + G+ Sbjct: 251 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGE 310 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + K+ IPLL IP LG LF + E Sbjct: 311 VLTIDKQEIETQVEVKSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENER 370 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 371 RELVVFITPRLV 382 >gi|218550647|ref|YP_002384438.1| outer membrane porin HofQ [Escherichia fergusonii ATCC 35469] gi|218358188|emb|CAQ90835.1| fimbrial transporter [Escherichia fergusonii ATCC 35469] Length = 426 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKS 229 N+ A ++ + ++ +++ QV L I + L+++G + + G + Sbjct: 174 NKTALAALEHWISEMDVPVG-QVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTT 232 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 233 LSSDLAVATATTQVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 291 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ + G+ Sbjct: 292 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGE 351 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + K+ IPLL IP LG LF + E Sbjct: 352 VLTIDKQEIETQVEVKSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENER 411 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 412 RELVVFITPRLV 423 >gi|283787974|ref|YP_003367839.1| fimbrial protein HofQ [Citrobacter rodentium ICC168] gi|282951428|emb|CBG91127.1| putative fimbrial protein HofQ [Citrobacter rodentium ICC168] Length = 412 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + ++ + S G + +D + F++ G Sbjct: 180 QVELAAHIVTINEKSLRELGVKWTLAEAQSTGAVGDVSTLGSDLSVAAATTRVGFNI-GR 238 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +D + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 239 IDGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 298 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP VL GRI L++ + P V+ G++ + ++ DT VE+ SG T+ Sbjct: 299 EAVLGMEVTPVVLQKGRIRLKLHISQNMPGQVLQQADGEVLAIDKQEIDTQVEVKSGETL 358 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ ++ +E +PLL IP LG LFR+ E E+ + TP LV Sbjct: 359 ALGGIFSRKNKRGQESVPLLGDIPWLGQLFRHDGKENERRELVVFITPRLV 409 >gi|113461255|ref|YP_719324.1| competence protein E [Haemophilus somnus 129PT] gi|112823298|gb|ABI25387.1| competence protein E [Haemophilus somnus 129PT] Length = 377 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 111/274 (40%), Gaps = 18/274 (6%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------- 226 +Q ++ KK++ ++ E Q+ ++ I + + LK++G + I ++ Sbjct: 103 DQETLNALKKLIKEMDQPIE-QIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGSL 161 Query: 227 --------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 ++ +F G ++ + L ALER + +A P L Sbjct: 162 AANGFQHLTEQLNVNFATAATPAGSIALQIAKINDRLLDLELTALERENNVEIIASPRLL 221 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + QSAS G + Y + V + + L TP + I L + + Sbjct: 222 TTNKQSASIKQGTEIPYVITGKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNS 281 Query: 339 PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 P + G +M S ++ +T V G TIVL G+ D I + + +PLL IPIL Sbjct: 282 PGSRITYGQNEMVSIDKQEINTQVFARDGETIVLGGVFHDTITKGVDKVPLLGDIPILKR 341 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 LF ++ E+ I TP +++ ++ +P Sbjct: 342 LFSRESERHQKRELVIFVTPRIIRSEQPNEIIKP 375 >gi|291280100|ref|YP_003496935.1| hypothetical protein DEFDS_1724 [Deferribacter desulfuricans SSM1] gi|290754802|dbj|BAI81179.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 796 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 76/299 (25%), Positives = 125/299 (41%), Gaps = 38/299 (12%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-------------QVTLKVT 201 D+ + ++ LS G+ + S+ V+ + A E QVT++ Sbjct: 503 ADASEFSSVIKSVLSPRGKMEINAKSNSFVITDIKSAIEQAKDLLEELDKRTPQVTIEAR 562 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSF------AADFGGKFVSEGG------------ 243 I EV +G Q + + S +F + G + G Sbjct: 563 IVEVFDTNNVNLGIQWGGNYNVNSTSVNFPNTITVNGNTGSTGIGGAGYVVNLPVGAPAG 622 Query: 244 --DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 S+ + F+ + L ALE +RT++ P +T + Q A SGG + + Sbjct: 623 ALALSLGNLSRTFNLDIALSALESQNKVRTISSPRITTLDNQEAEIKSGGTAIIVPTGDN 682 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 T V D G+ L P + S I L I+ E S +G + + +KA T V Sbjct: 683 TETEEV---DVGIKLKIKPHITSNNMIYLDIEVEKS--SLGAVTANTATTEEKKAKTQVL 737 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L +G T V+ G+ +D+ ++ +G+P LSKIPILGALFR + E+ + TP +V+ Sbjct: 738 LANGETTVIGGIYEDEKSEVNQGVPFLSKIPILGALFRAKNNTVTKRELLVFITPKIVE 796 >gi|291279644|ref|YP_003496479.1| type IV pilus assembly protein PilQ [Deferribacter desulfuricans SSM1] gi|290754346|dbj|BAI80723.1| type IV pilus assembly protein PilQ [Deferribacter desulfuricans SSM1] Length = 406 Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 114/252 (45%), Gaps = 16/252 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------SFAADFG 235 K ++ +++ + QV ++ I EV + +++G Q S + + +K S D Sbjct: 157 KYYISKIDVPIK-QVMIEAKIVEVSKTGSRELGLQWSANTNINSTNKYFPNTISIGGDTS 215 Query: 236 G-----KFVSEGGDFSV--KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G + GG S+ F + L ALE+ + +++P + ++ + A Sbjct: 216 GYMVNLPITNPGGTLSLLLGNYSGSFILDAKLQALEQQGLAKIVSQPKIVTMNNKEAKIE 275 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 SG + YK + T V + + + L TP V I L+I + SE Sbjct: 276 SGFEFHYKVIDDDD--TDVESDEAKLSLTVTPQVTPDNNILLKIVVDKSELDFSKTVDGY 333 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P RKA+T V+L G T V+ GL+++ +P LSKIP++G LF++ + + Sbjct: 334 PLKFTRKAETYVKLKDGETTVIGGLVQEKQSNSTSAVPGLSKIPLIGWLFKSKTNSHDLN 393 Query: 409 EIFIAATPFLVK 420 ++ I TP ++K Sbjct: 394 DLVIFITPKIIK 405 >gi|148997|gb|AAA25012.1| A mini-Tn10kan insertion in ORF E causes a deficiency in transformation. ORF E is 24% identical to the products of the filamentous phage gene IV and of pulD, a gene in the pulC operon of Klebsiella; ORF; putative [Haemophilus influenzae] Length = 441 Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVK 420 ++K Sbjct: 426 HILK 429 >gi|324111701|gb|EGC05681.1| type IV pilus secretin PilQ [Escherichia fergusonii B253] Length = 412 Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKS 229 N+ A ++ + ++ +++ QV L I + L+++G + + G + Sbjct: 160 NKTALAALEHWISEMDVPVG-QVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LSSDLAVATATTQVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ + G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + K+ IPLL IP LG LF + E Sbjct: 338 VLTIDKQEIETQVEVKSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|170717282|ref|YP_001784397.1| type IV pilus secretin PilQ [Haemophilus somnus 2336] gi|168825411|gb|ACA30782.1| type IV pilus secretin PilQ [Haemophilus somnus 2336] Length = 377 Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 111/274 (40%), Gaps = 18/274 (6%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------- 226 NQ ++ KK++ ++ E Q+ ++ I + + LK++G + I ++ Sbjct: 103 NQETLNALKKLIKEMDQPIE-QIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGNL 161 Query: 227 --------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 ++ +F G ++ + L ALER + +A P L Sbjct: 162 AANGFQHLTEQLNVNFATTATPAGSIALQIAKINDRLLDLELTALERENNVEIIASPRLL 221 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + QSAS G + Y + V + + L TP + I L + + Sbjct: 222 TTNKQSASIKQGTEIPYVITGKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNS 281 Query: 339 PVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 P + G +M S ++ +T V G TIVL G+ D I + + +PLL IPIL Sbjct: 282 PGSRITYGQNEMVSIDKQEINTQVFAQDGETIVLGGVFHDTITKGVDKVPLLGDIPILKR 341 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 LF ++ E+ I TP +++ ++ +P Sbjct: 342 LFSRESERHQKRELVIFVTPRIIRSEQPNEIIKP 375 >gi|148262762|ref|YP_001229468.1| general secretion pathway protein D [Geobacter uraniireducens Rf4] gi|146396262|gb|ABQ24895.1| general secretion pathway protein D [Geobacter uraniireducens Rf4] Length = 641 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 67/274 (24%), Positives = 114/274 (41%), Gaps = 22/274 (8%) Query: 169 SQSGRNQYANSSSKKVMNLLNIAGE-----DQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 ++ + +S NL+ + + QV ++ IAEV LK +G Q + G + Sbjct: 325 DKATNSLVIMASPTDYQNLIQVIQKLDKRRRQVFVEAVIAEVSLSKLKDLGVQWGVLGGA 384 Query: 224 SGPSKSFAA-----DFGGKFVSEGGDFSVKGVL------DRFSFETVLHALERATAIRTL 272 S + + A D ++ + G+ +F VL AL+ A+ L Sbjct: 385 SNGTATAAGLYDPQDTFTTLLTALANLKSAGITIPDLTGTALNFSAVLRALDSLGAVNVL 444 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTHDYGVVLHFTPTVLSPGR 327 + PT+ + A G +K + + T+ + D G+ L TP + Sbjct: 445 STPTIMTSDNKEAEIFVGENVPFKGNVTISNTTTPSFQSIERKDTGITLKITPQISEGEY 504 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRV-RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + L I E+S +G R A T+V + T+V+ GL++D Q+ IP Sbjct: 505 VKLDIYQEISAISNTTVSGASDLITTKRSAKTSVAVKDKDTMVIGGLIQDREQETVNKIP 564 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 LL IP LG LF+ R++T + I TP +V+ Sbjct: 565 LLGDIPFLGWLFKFKNTTRQKTNLLIVLTPRIVR 598 >gi|300718766|ref|YP_003743569.1| secretion and pilus transport protein [Erwinia billingiae Eb661] gi|299064602|emb|CAX61722.1| secretion and pilus transport protein [Erwinia billingiae Eb661] Length = 388 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 111/250 (44%), Gaps = 6/250 (2%) Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 A ++++ + L++ E Q+ L I + + L+++G + T + + F Sbjct: 139 ALDATRRWVQALDVPLE-QIELAAHIVTINEESLRELGVRWGTTSNEQITQALRTSQFTV 197 Query: 237 KFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + L R + L ALE+ + +A P L Q AS G + Sbjct: 198 SLPVADAALTAGFTLARLDGKLLDLELSALEQENKLEIIASPRLFTSHQQPASIKQGTEI 257 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SY 351 Y+ S ++G T+V + + + TP V + GRI L++Q + P + +G+ + Sbjct: 258 PYEVSSGTSGTTTVEFKEAVLGMEVTPVVQANGRILLKLQLTQNVPGRTMRSGEGEYLAI 317 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ T V L G T+ L G+ + + +PL+ IPILG+LFR ++ E+ Sbjct: 318 DKQEIQTQVTLKDGQTLALGGIFQRSTASGQRKVPLIGDIPILGSLFRYDINEQKRRELV 377 Query: 412 IAATPFLVKP 421 I TP L++ Sbjct: 378 IFITPRLIRD 387 >gi|322831067|ref|YP_004211094.1| general secretion pathway protein D [Rahnella sp. Y9602] gi|321166268|gb|ADW71967.1| general secretion pathway protein D [Rahnella sp. Y9602] Length = 659 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 119/318 (37%), Gaps = 33/318 (10%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 Q S ++V+ L+I QV ++ I EV+ +G Q S Sbjct: 321 TAQQDVMQSLEQVITKLDIR-RAQVLVEAIIVEVQDGNGLNLGIQWSNNQVGGTQFTGTG 379 Query: 232 ADFGGKFVSE---------GGDFSVKGVLDRFS----------FETVLHALERATAIRTL 272 A D + L F+ + +L AL + L Sbjct: 380 APISTVAAGVRQYKKEGIISSDNPLSSTLQTFNGMTAGFFSGDWNVLLTALSTSNKNDIL 439 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G + +T S +SV G L TP + + Sbjct: 440 ATPSIVTLDNKEASFNVGQEVPSLSGSQTTSGDNIYSSVVYKTVGTKLKVTPQINEGDSV 499 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + I+ EVS N+ P++ R V + +G T+VL GLL D ++ K +PLL Sbjct: 500 LMEIEQEVSSVDTSTNSSLGPTFNTRTISNAVLVRTGETVVLGGLLDDSTKETKSKVPLL 559 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP +G LFR + + + + P +++ D+ YS + K F ++ Sbjct: 560 GDIPWIGNLFRYTSTESAKRNLMVFIRPTIIRD---------DEVYSSISNKKYSHFQKI 610 Query: 449 NKIYGPKEASEVEGQNYK 466 K ++ ++ N + Sbjct: 611 QKTRQDEDHQDLLTPNTR 628 >gi|52426025|ref|YP_089162.1| GspD protein [Mannheimia succiniciproducens MBEL55E] gi|52308077|gb|AAU38577.1| GspD protein [Mannheimia succiniciproducens MBEL55E] Length = 478 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 81/461 (17%), Positives = 174/461 (37%), Gaps = 43/461 (9%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ---------- 61 + +F S+ + E ++ + +++++ N +++ Sbjct: 30 LFFGIFISSAFAGESGTFAERQFSIHLKKAPLVATLQQLALEQNANLVIDDELEGTLSLK 89 Query: 62 -VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI---LIGHDGKQMLNLDILIE 117 V+++ + S ++ +H + +Y F KN N+I I + K N L E Sbjct: 90 LEKVNLERLFHSVAKLKNLSLHKDKDIYYFTKN----NLIEPSSIAGELKNTENFTALSE 145 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 ++ + L A ++ +L V ++ +R+ +L +S +N Sbjct: 146 PNLVSTTVKLHFAKASEVMKSLTSGTGSLLS-PVGSVSFDERSNQLLIQDERRSLQNI-- 202 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------TGS 222 K ++ L+ E Q+ ++ I + + LK++G + + Sbjct: 203 ----KNIIAQLDKPIE-QIAIEARIVTMNDESLKELGVRWGLLEGVNSAHRIAGSLEANG 257 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + ++ +F G + + L ALE+ ++ +A P L + Sbjct: 258 FADIGQNLNVNFPTSATPAGSVALQVAKIHGRLLDLELTALEQENNVKIIASPRLLTTNK 317 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 +SAS G + Y V+ V + + L TP + I L + + P Sbjct: 318 KSASIKQGTEIPYVAVNRKNDTEHVEFREAVLGLEVTPHISKDNSILLDLIVSQNSPGAN 377 Query: 343 V--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ S ++ +T V G TIVL G+ D I + ++ +P+L IP++ LF Sbjct: 378 IVYGNGNLISIDKQEINTQVFAKDGETIVLGGVFNDTITKSEDKVPILGDIPLIKHLFSK 437 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 ++ E+ I TP ++K + + Y+ + K Sbjct: 438 ESEKHQKRELVIFVTPHILKQGESLEQIQKRFKYAPKSPEK 478 >gi|255020086|ref|ZP_05292157.1| type II and III secretion system protein [Acidithiobacillus caldus ATCC 51756] gi|254970448|gb|EET27939.1| type II and III secretion system protein [Acidithiobacillus caldus ATCC 51756] Length = 502 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 90/454 (19%), Positives = 174/454 (38%), Gaps = 63/454 (13%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 A+ + + + I + +V ++ V+ V + D V + L G Sbjct: 13 AIAMAIPAQAAEDRTIDLYAGQVRVIPTK-PVKRVAIGDGKVLSTTVVDGNELLLLGDAE 71 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN----IRVEMVSDTVVLHGM 150 G+ ++ + DG + ++ +++ +R + IRV V + Sbjct: 72 GETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNL 131 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 T RA+ Q+ + ++ ++ E V L V I E+R+ +L Sbjct: 132 APTTLARVRAL--------QALYPKTIVLATPSPFDM-----EKMVWLDVNILEIRKSVL 178 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGG----KFVSEGGDF-----------------SVKG 249 + G S GP +F DF G V G D S+ G Sbjct: 179 ENFGVDWS--KQIPGPFAAFGKDFVGPRNVATVPLGQDLTQPPVAGTGVRVTPPLGSLNG 236 Query: 250 VLDRFSFE----------------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +D + + ++ +A P L+A SG F +GGQ Sbjct: 237 AIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQV 296 Query: 294 LYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGD 347 ++ A +VT DYG+ L F P V + +R+ +VS+ + +N Sbjct: 297 PILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFT 356 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P + R+++ + + G T+V++GL+ + +P L IPILG LF+++ F Sbjct: 357 VPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGN 416 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 T++ I TP +V ++ ++ + ++D+ + Sbjct: 417 TDLVILVTPRVVSAASLENIRQVSQAVEMKDEYR 450 >gi|330958220|gb|EGH58480.1| general secretion pathway protein D [Pseudomonas syringae pv. maculicola str. ES4326] Length = 773 Score = 200 bits (508), Expect = 5e-49, Method: Composition-based stats. Identities = 69/306 (22%), Positives = 123/306 (40%), Gaps = 21/306 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 +G A + S L ++ Q+ + + L+ QV ++ I EV+ Sbjct: 458 NGKSLDASTRITAQKSSNQLLVRTRPAQW--KEIESAIKRLDNP-PLQVQIETRILEVKL 514 Query: 208 DILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFETV 259 +G Q + +SG + + G + G ++ F + + Sbjct: 515 TGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSIGTGGAALAATDSFFYSFVSNNLQVA 574 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGV 314 L ALE + L+ P+L ++ Q A G + +T A+ SV GV Sbjct: 575 LRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTTVNTNASATTLSSVEYVQTGV 634 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLA 371 +L P + G + + IQ +VS+ N+ D+ P R T V SG T++L Sbjct: 635 ILDVVPRINPGGLVYMDIQQQVSDADNSANSTDLNGNPRISTRSVSTQVAAQSGQTVLLG 694 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+K D + +P L +IP L LF N+ +++ TE+ + TP ++ + + Sbjct: 695 GLIKQDNAESVSAVPYLGRIPGLKWLFGNTSKSKDRTELIVLITPRVI--TSSSQARQVT 752 Query: 432 DHYSVE 437 D Y + Sbjct: 753 DDYRQQ 758 >gi|253690245|ref|YP_003019435.1| type IV pilus secretin PilQ [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756823|gb|ACT14899.1| type IV pilus secretin PilQ [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 424 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 6/231 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + + L+++G + S+ + +F + + L R Sbjct: 190 QVQLAAHIVTISSEHLQELGVNWGLGEGSAANNALRLNNFNVGLPVDTPAINAGFHLARL 249 Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + + L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + Sbjct: 250 NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 309 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTI 368 + + TP +L GRI L ++ + P + GD + ++ T V + G TI Sbjct: 310 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 369 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + +P+L ++P+ G LFRN E+ I TP L+ Sbjct: 370 VLGGIFQQQKKSSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420 >gi|229577502|ref|YP_001178510.2| outer membrane porin HofQ [Enterobacter sp. 638] Length = 413 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 7/232 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L+ I + L+++G + ++ + G + AD + F++ G Sbjct: 181 QVQLEAHIVTINEKSLRELGVKWNLAEAQGAGAPGQVTTMGADLSVANATTHVGFNI-GR 239 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +D + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 240 IDGRLLDLELSALEQKQQLEIIASPRLLASHMQPASIKQGSEIPYQVSSGDSGATSVEFK 299 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP VL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+ Sbjct: 300 EAVLGMEVTPVVLPNGRVRLKLRISENMPGQVLQQADGETLAIDKQEIETQVEVKSGETL 359 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G+ + + +P L +P+LG FR+ + E E+ + TP L+ Sbjct: 360 ALGGIFSQKNKTASDSVPGLGHVPLLGQFFRHDGKDNERRELVVFITPRLID 411 >gi|145320312|gb|ABP62459.1| type IV pilus secretin PilQ [Enterobacter sp. 638] Length = 373 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 7/232 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L+ I + L+++G + ++ + G + AD + F++ G Sbjct: 141 QVQLEAHIVTINEKSLRELGVKWNLAEAQGAGAPGQVTTMGADLSVANATTHVGFNI-GR 199 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +D + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 200 IDGRLLDLELSALEQKQQLEIIASPRLLASHMQPASIKQGSEIPYQVSSGDSGATSVEFK 259 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TP VL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+ Sbjct: 260 EAVLGMEVTPVVLPNGRVRLKLRISENMPGQVLQQADGETLAIDKQEIETQVEVKSGETL 319 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G+ + + +P L +P+LG FR+ + E E+ + TP L+ Sbjct: 320 ALGGIFSQKNKTASDSVPGLGHVPLLGQFFRHDGKDNERRELVVFITPRLID 371 >gi|148827632|ref|YP_001292385.1| competence protein E [Haemophilus influenzae PittGG] gi|148718874|gb|ABR00002.1| competence protein E [Haemophilus influenzae PittGG] Length = 445 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 366 NTQVFAKGGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425 Query: 417 FLVK 420 ++K Sbjct: 426 HILK 429 >gi|121999148|ref|YP_001003935.1| general secretion pathway protein D [Halorhodospira halophila SL1] gi|121590553|gb|ABM63133.1| general secretion pathway protein D [Halorhodospira halophila SL1] Length = 670 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 74/395 (18%), Positives = 134/395 (33%), Gaps = 49/395 (12%) Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV-----EMVSDTVV--LHGMVRTIQ 155 ++ D + L L + D ++++V L GM + Sbjct: 248 DRSNSVLVGGDPARRPSVMELIQRLDAELEDEEGAAVIYLRYSDAESIVPILEGMAEGMA 307 Query: 156 DSQRAVELSETFLSQSGRNQYANSSS------KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 ++ N + V+N L++ QV ++ IAEV + Sbjct: 308 RGPEGETGVSIHDHEATNALIINGPPDLVAKLRGVVNRLDVR-RAQVLVEAIIAEVSAER 366 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKF----------------VSEGGDFSVKGVLDR 253 +++G Q G +F A GG +S G + Sbjct: 367 SQELGIQWGALGDQGVGLVNFDAAGGGSVTNIGRAAAGGTDALGNLSLGSGLTAGAATRG 426 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---VSSSTGATSVTTH 310 +L AL + L+ P++ + + A G + T V + S+ Sbjct: 427 GELGVLLRALSSESDSNILSTPSVMTMDNEEAEIVVGQNVPFVTGREVGDTRDFQSIQRE 486 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 D GV L P + + L I+ EVS+ A D+ + +R T+ + G +VL Sbjct: 487 DVGVQLRIRPQINEGDSLKLDIEKEVSDVQERGEAEDIVT-SMRSITTSAMVDDGEIMVL 545 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 GL+ + + + +P L IP LG LFR ++ + + P +++ Sbjct: 546 GGLMDEQAESQTDRVPGLGSIPGLGWLFRYESSAAQKQNLMVFLRPRIIEN--------- 596 Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 DDA+ + N I + AS G + Sbjct: 597 ------RDDARELTSPKYNLIRNRQLASRARGMRF 625 >gi|194431292|ref|ZP_03063585.1| protein transporter HofQ [Shigella dysenteriae 1012] gi|194420747|gb|EDX36823.1| protein transporter HofQ [Shigella dysenteriae 1012] Length = 412 Score = 199 bits (507), Expect = 7e-49, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+VL G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLVLGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|307555474|gb|ADN48249.1| protein transport protein HofQ precursor [Escherichia coli ABU 83972] Length = 377 Score = 199 bits (507), Expect = 7e-49, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + G + Sbjct: 125 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 183 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 184 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 242 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 243 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 302 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 303 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 362 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 363 RELVVFITPRLV 374 >gi|330807111|ref|YP_004351573.1| Type IV fimbriae biogenesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375219|gb|AEA66569.1| Type IV fimbriae biogenesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 696 Score = 199 bits (507), Expect = 7e-49, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 132/332 (39%), Gaps = 35/332 (10%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 D+A L L + + +D L V + + +A E + + N A Sbjct: 371 ADLAPLRRELLQ------VNYAKATDIAKLFQSVTSAEA--KADERGTITVDERTNNIIA 422 Query: 178 NSSS------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + ++++ L+I QV ++ I E D K +G + + + G S Sbjct: 423 YQTQDRLDELRRIVAQLDIP-VRQVMIEARIVEANVDYDKSLGVRWGGSVQNKGNWSSSG 481 Query: 232 ADFGGK--------------FVSEGGDFSVKGV-----LDRFSFETVLHALERATAIRTL 272 G FV G + G+ D + L A+E+ + Sbjct: 482 VTTGDSTTVGTPGSTSTNQPFVDLGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIV 541 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 ++P + ++A G + Y+ SSS GATSV+ + + L TP + RI + + Sbjct: 542 SQPKVVTSDKETAKILKGTEIPYQEASSS-GATSVSFKEASLSLEVTPQITPDNRIIMEV 600 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + EP D+P + + + V + G TIV+ G+ + ++ + +P L +P Sbjct: 601 KVTKDEPDYLNKVNDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFLGDVP 660 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 LG LFR + ++E+ + TP ++ A+ Sbjct: 661 YLGRLFRRDVVSDSKSELLVFLTPRIMNNQAI 692 >gi|323179085|gb|EFZ64659.1| transport protein hofQ [Escherichia coli 1180] Length = 377 Score = 199 bits (507), Expect = 7e-49, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 125 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 183 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 184 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 242 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 243 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 302 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 303 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 362 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 363 RELVVFITPRLV 374 >gi|271502312|ref|YP_003335338.1| type IV pilus secretin PilQ [Dickeya dadantii Ech586] gi|270345867|gb|ACZ78632.1| type IV pilus secretin PilQ [Dickeya dadantii Ech586] Length = 433 Score = 199 bits (507), Expect = 7e-49, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 6/232 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251 QV L I + + LK +G + +S +F E + L Sbjct: 194 QVQLAAHIVTISSEHLKALGVNWGLGEASIAGQAMQMNNFTVNLPVESPAINAGFHLAKL 253 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + + L ALE+ + +A P L Q+AS G + Y+ S ++G+TS+ + Sbjct: 254 NGRLLDLELMALEQENEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 313 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368 + + TP +L G+I L + + P + G++ + ++ T V + G TI Sbjct: 314 AVLGMEVTPRILHGGQITLNLLISQNMPGRAIKQGEGGEILAIDKQEIQTQVTVQDGETI 373 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 VL G+ + Q + +P L +P +G LFR + E+ I TP L++ Sbjct: 374 VLGGIFQQQKNQGERQVPGLGALPGIGRLFRATSQQHTRRELVIFITPTLIQ 425 >gi|330720479|gb|EGG98780.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC2047] Length = 332 Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 105/242 (43%), Gaps = 17/242 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS------------KSFAADFGGKFVSE 241 QV ++ I R KQ+G + T G S A D G + Sbjct: 93 RQVQVEARIVIARDTFDKQLGIRWGFTAQGGGSSDRTLTTGGGGLAGDVAVDLGVSGATS 152 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + V + + L ALE +++P L GQ+A SG + Y+ SSS Sbjct: 153 A--LQLGFVHGNDTLDLTLSALESDGVSEVVSQPKLITADGQTARIESGVEIPYQEASSS 210 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 GATSV+ D + L TP + RI + ++ V++ +G +PS R+ T V Sbjct: 211 -GATSVSFKDAVLALEVTPQITPDDRIIMDLK--VNKDSVGEIFLGIPSVDTREIQTQVL 267 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +G T+VL G+ + + + P L IP+LG LF+ ++TE+ I TP L+K Sbjct: 268 VENGETVVLGGVYERETIENISKTPFLGDIPVLGELFKRKTKEDDKTELLIFITPKLIKD 327 Query: 422 VA 423 Sbjct: 328 TV 329 >gi|308271298|emb|CBX27906.1| hypothetical protein N47_G32300 [uncultured Desulfobacterium sp.] Length = 695 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 122/305 (40%), Gaps = 20/305 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------GEDQVTLKVT 201 G + Q Q ++ + +N +S V L QV ++ T Sbjct: 391 TGTNTSSQTRQISLPSGLKIAADDTKNIIMIMASPSVYRDLLTLLRTLDKPAKQVLIEAT 450 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 IAE+ Q G + I + G + + + G F+ + + + ++ Sbjct: 451 IAELTLSDDLQYGLEWYINNTLQGGAYTLGTSGNLGLSASGLAFNF--ISESKKVKGLIS 508 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDY 312 A A L+ P L I + A+ G T ++ SV + Sbjct: 509 AFAIAGKTNILSTPRLMVIDNKEATIQVGEDVPTVTSQVTSTESTITSTNLLQSVQYRNT 568 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 GV+L PT+ + G + L + EVSE AG P +RK +TTV + G T++L G Sbjct: 569 GVILRVKPTINTEGLLTLELSQEVSETGEKGVAGS-PVILMRKINTTVVIAQGQTLLLGG 627 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L+K+ + +P L IPI+G LF+ + + +TE+ I TP ++ V D +R Sbjct: 628 LMKEKNTTGESKVPGLGDIPIIGNLFKATSKTKNKTELIILVTPTIISNVD--DATRVTA 685 Query: 433 HYSVE 437 + E Sbjct: 686 EFRKE 690 >gi|293412807|ref|ZP_06655475.1| conserved hypothetical protein [Escherichia coli B354] gi|291468454|gb|EFF10947.1| conserved hypothetical protein [Escherichia coli B354] Length = 412 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|148556416|ref|YP_001263998.1| type II and III secretion system protein [Sphingomonas wittichii RW1] gi|148501606|gb|ABQ69860.1| type II and III secretion system protein [Sphingomonas wittichii RW1] Length = 431 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 104/420 (24%), Positives = 158/420 (37%), Gaps = 45/420 (10%) Query: 26 LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 L A A+I + + +S+ L +L P + + V V S R Sbjct: 5 LSTALVAAVALIGPAAATAAED-SLSLQLRVKRVLDYPKPIARIQVDREGVIAVRAPSRR 63 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 ++ + G A + + DG + I + + V D Sbjct: 64 SLGVTAIGTGLATLSVFAADGSLIGRTAISVG------------LPGGATGDVRADEDDG 111 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L G V + +S+ + N L++ GE V + V A V Sbjct: 112 SLSGTVDGLAARAALQR---------------SSADRGAANSLSVNGEQVVAVDVQFAAV 156 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-----------DFSVKGVLDRF 254 L+ +GF S + A G + G F++ Sbjct: 157 SSSTLRALGFNFSKLSGDLQGAIVSPATLGNFSSTSTGLTLDTTAPLQNAFNLFLSAPNR 216 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--TTHDY 312 VL AL + LA+PTL SG+ ASF +GG+ ++ + ++ Sbjct: 217 GITAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEVPIPVPQNNGNGNGIGIEYKEF 276 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTI 368 GV L TP VLS RI L+I EVSE + +P R R +TTV+L SG + Sbjct: 277 GVRLKVTPFVLSKDRIVLKIAPEVSELDYTNGVRLQGYVVPGLRRRSTETTVQLGSGQSF 336 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 V+AGL + KE P L +P+LGALF+ + RE E+ I ATP LV P+ + Sbjct: 337 VIAGLTYSNSVVSKEKTPFLGDLPVLGALFKRQQNQRESQELIIVATPRLVGPMDPSRIP 396 >gi|170766950|ref|ZP_02901403.1| protein transporter HofQ [Escherichia albertii TW07627] gi|170124388|gb|EDS93319.1| protein transporter HofQ [Escherichia albertii TW07627] Length = 386 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + ++ + S G + +D + F++ G Sbjct: 154 QVELSAHIVTINEKSLRELGVKWTLADAQHVGSVGQVTTLGSDLSVATATTHIGFNI-GR 212 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ + L ALE+ + +A P L A Q AS G + Y+ S +GATSV Sbjct: 213 INGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFK 272 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ SG T+ Sbjct: 273 EAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETL 332 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 333 ALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 383 >gi|194365988|ref|YP_002028598.1| general secretion pathway protein D [Stenotrophomonas maltophilia R551-3] gi|194348792|gb|ACF51915.1| general secretion pathway protein D [Stenotrophomonas maltophilia R551-3] Length = 793 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 128/314 (40%), Gaps = 32/314 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++V++ L+ QV ++ I EV + ++G Q + + F GG ++ Sbjct: 380 RRVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTNGGSGLNT 438 Query: 242 G-------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G ++ GV + + + +AL+ L+ P L + Sbjct: 439 AARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSKGGANILSTPNLMTLDN 498 Query: 283 QSASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 ++AS G + + S+ ++ D G+ L P + G + L I Sbjct: 499 EAASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQ 558 Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 EVS N+ R DT+V L G +VL GLL+D + ++ +P L KIP+ Sbjct: 559 EVSSIDAQSANSTVGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPV 618 Query: 394 LGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 LGALFR+ R +T + + P +V+ P A + L+R D Y +A+A + Sbjct: 619 LGALFRSDTRKRAKTNLMVFLRPHVVRDPAAGQRLTR--DRYDYMRNAQAGTQPVQSWAL 676 Query: 453 GPKEASEVEGQNYK 466 A ++ Q+ Sbjct: 677 PALSAPQLPPQDLS 690 >gi|323174021|gb|EFZ59649.1| transport protein hofQ [Escherichia coli LT-68] Length = 386 Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|307545360|ref|YP_003897839.1| general secretion pathway protein D [Halomonas elongata DSM 2581] gi|307217384|emb|CBV42654.1| general secretion pathway protein D [Halomonas elongata DSM 2581] Length = 749 Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats. Identities = 71/284 (25%), Positives = 122/284 (42%), Gaps = 17/284 (5%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH- 217 A E S L ++ Q+ + + L+ QV ++ I EVR G Q Sbjct: 449 TAQESSNQLLVRARPAQW--KEIESAIERLDQP-PRQVQIETRILEVRLTGALNQGVQWY 505 Query: 218 --SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---SFETVLHALERATAIRTL 272 + G++S PS + A+ G + G + F + + L AL+ + L Sbjct: 506 LGQLAGNASNPSVANASGSQGALGAGGVSLGGSSMFYSFVGDNLQVALRALQTRGLTQVL 565 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGR 327 + P+L ++ Q A G + +T +SV GV+L P + G Sbjct: 566 SAPSLVVLNNQQAQIQVGDNIPVNQTTVNTADADTTLSSVEYVQTGVILDVVPRINPGGL 625 Query: 328 IGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + + IQ +VS+ + P R T V + SG T++L GL++ + + + + Sbjct: 626 VYMDIQQQVSDADDNAAGSTASNPRISTRAVSTQVAVQSGQTVLLGGLIQQNNAESETRV 685 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLS 428 P LS IP LG LF + +R+ TE+ + TP +V PV R+++ Sbjct: 686 PGLSSIPGLGRLFGSEARDRDRTELIVLITPKVVNNPVQAREIT 729 >gi|300313469|ref|YP_003777561.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum seropedicae SmR1] gi|300076254|gb|ADJ65653.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 674 Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats. Identities = 62/273 (22%), Positives = 115/273 (42%), Gaps = 31/273 (11%) Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKSFA 231 A ++ +K++ ++IA QV ++ I E + +G + + G++ G S + Sbjct: 402 AALANVRKLIERIDIA-ARQVMIEARIVEADDSFARNLGVKLGLAARTQGAALGNSYASV 460 Query: 232 ADFGGKFVSEGGD-----------------------FSVKGVLDRFSFETVLHALERATA 268 + G+ G F++ + L ALE Sbjct: 461 GELSGQTPPAAGTYLREPALGLGAGALAGSAPGSFAFTLFNAAAQRFLNVELSALEAEGR 520 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + ++ P L Q+A G + Y+ S +GAT+ + L TP + G + Sbjct: 521 GKIVSSPRLVTADQQAALIEQGEEIPYQQ-SIGSGATATAFKKANLKLEVTPQITPDGNV 579 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L + +V++ G + + T V++ GGT+V+ G+ + + +PLL Sbjct: 580 ILDV--DVNKDSRGSATPGGLAINTKHIKTKVQVEDGGTVVIGGIYTQTDNEHETRVPLL 637 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +IP+LGALFR+ R++TE+ I TP +V P Sbjct: 638 GEIPLLGALFRSRNKVRDKTELLIFLTPRIVAP 670 >gi|293416792|ref|ZP_06659429.1| transporter HofQ [Escherichia coli B185] gi|291431368|gb|EFF04353.1| transporter HofQ [Escherichia coli B185] Length = 412 Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ +K + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEKWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|15803894|ref|NP_289930.1| outer membrane porin HofQ [Escherichia coli O157:H7 EDL933] gi|15833487|ref|NP_312260.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. Sakai] gi|168747135|ref|ZP_02772157.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113] gi|168753140|ref|ZP_02778147.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401] gi|168759412|ref|ZP_02784419.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501] gi|168765735|ref|ZP_02790742.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486] gi|168772721|ref|ZP_02797728.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196] gi|168779471|ref|ZP_02804478.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076] gi|168785192|ref|ZP_02810199.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC869] gi|168797158|ref|ZP_02822165.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC508] gi|208807105|ref|ZP_03249442.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206] gi|208814350|ref|ZP_03255679.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045] gi|208821093|ref|ZP_03261413.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042] gi|209400800|ref|YP_002272825.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115] gi|217324393|ref|ZP_03440477.1| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588] gi|254795305|ref|YP_003080142.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. TW14359] gi|261224673|ref|ZP_05938954.1| predicted fimbrial transporter [Escherichia coli O157:H7 str. FRIK2000] gi|261254432|ref|ZP_05946965.1| predicted fimbrial transporter [Escherichia coli O157:H7 str. FRIK966] gi|291284727|ref|YP_003501545.1| putative fimbrial transporter [Escherichia coli O55:H7 str. CB9615] gi|12518014|gb|AAG58491.1|AE005561_4 putative transport portein [Escherichia coli O157:H7 str. EDL933] gi|13363707|dbj|BAB37656.1| putative transport portein [Escherichia coli O157:H7 str. Sakai] gi|187771720|gb|EDU35564.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196] gi|188018292|gb|EDU56414.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113] gi|189002616|gb|EDU71602.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076] gi|189359008|gb|EDU77427.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401] gi|189364497|gb|EDU82916.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486] gi|189369829|gb|EDU88245.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501] gi|189374266|gb|EDU92682.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC869] gi|189380180|gb|EDU98596.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC508] gi|208726906|gb|EDZ76507.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206] gi|208735627|gb|EDZ84314.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045] gi|208741216|gb|EDZ88898.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042] gi|209162200|gb|ACI39633.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115] gi|209756640|gb|ACI76632.1| putative transport protein [Escherichia coli] gi|209756642|gb|ACI76633.1| putative transport protein [Escherichia coli] gi|209756644|gb|ACI76634.1| putative transport protein [Escherichia coli] gi|209756646|gb|ACI76635.1| putative transport protein [Escherichia coli] gi|217320614|gb|EEC29038.1| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588] gi|254594705|gb|ACT74066.1| predicted fimbrial transporter [Escherichia coli O157:H7 str. TW14359] gi|290764600|gb|ADD58561.1| predicted fimbrial transporter [Escherichia coli O55:H7 str. CB9615] gi|320639673|gb|EFX09267.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. G5101] gi|320655674|gb|EFX23597.1| outer membrane porin HofQ [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661459|gb|EFX28874.1| outer membrane porin HofQ [Escherichia coli O55:H7 str. USDA 5905] gi|320666481|gb|EFX33464.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. LSU-61] Length = 412 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|26249985|ref|NP_756025.1| outer membrane porin HofQ [Escherichia coli CFT073] gi|227883521|ref|ZP_04001326.1| competence protein E [Escherichia coli 83972] gi|26110414|gb|AAN82599.1|AE016768_17 Protein transport protein hofQ precursor [Escherichia coli CFT073] gi|227839400|gb|EEJ49866.1| competence protein E [Escherichia coli 83972] Length = 412 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|152978367|ref|YP_001343996.1| type IV pilus secretin PilQ [Actinobacillus succinogenes 130Z] gi|150840090|gb|ABR74061.1| type IV pilus secretin PilQ [Actinobacillus succinogenes 130Z] Length = 482 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 59/280 (21%), Positives = 114/280 (40%), Gaps = 19/280 (6%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------- 226 N+ + + KK++ L+ E Q+ ++ I + + LK++G + + ++G Sbjct: 176 NRQSIRNIKKLIAELDKPIE-QIAIEARIVTMNDESLKELGVRWGMFEPTAGAHKVSGSL 234 Query: 227 --------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S + +F + G ++ + L ALE+ + +A P L Sbjct: 235 AANGFTDISNNLNVNFATATMPAGSVALQVAKINGRLLDLELTALEQEKNVEIIASPRLL 294 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + ++AS G + Y + SV + + L TP + I + + + Sbjct: 295 TTNKKAASIKQGTEIPYVVTNGKNDTQSVEFREAVLGLEVTPHISQNNAILMDLTVSQNS 354 Query: 339 PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 P V+ G+ + S ++ T V G TIVL G+ D + + +P+L IP++ Sbjct: 355 PGNRVSYGENSEVVSIDKQEIKTQVFAKDGETIVLGGVFHDTVTKGSNKVPVLGDIPVIK 414 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 LF N R++ E+ I TP ++K + R D Sbjct: 415 HLFGNHSERRQKRELVIFVTPRILKNGETLEQLRHKDGLQ 454 >gi|193061725|ref|ZP_03042822.1| protein transporter HofQ [Escherichia coli E22] gi|193068780|ref|ZP_03049740.1| protein transporter HofQ [Escherichia coli E110019] gi|194427057|ref|ZP_03059609.1| protein transporter HofQ [Escherichia coli B171] gi|194435813|ref|ZP_03067916.1| protein transporter HofQ [Escherichia coli 101-1] gi|253771782|ref|YP_003034613.1| outer membrane porin HofQ [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163319|ref|YP_003046427.1| outer membrane porin HofQ [Escherichia coli B str. REL606] gi|256020735|ref|ZP_05434600.1| outer membrane porin HofQ [Shigella sp. D9] gi|260846175|ref|YP_003223953.1| putative fimbrial transporter HofQ [Escherichia coli O103:H2 str. 12009] gi|260857498|ref|YP_003231389.1| putative fimbrial transporter HofQ [Escherichia coli O26:H11 str. 11368] gi|260870117|ref|YP_003236519.1| putative fimbrial transporter HofQ [Escherichia coli O111:H- str. 11128] gi|332281935|ref|ZP_08394348.1| outer membrane porin HofQ [Shigella sp. D9] gi|192932515|gb|EDV85112.1| protein transporter HofQ [Escherichia coli E22] gi|192957856|gb|EDV88299.1| protein transporter HofQ [Escherichia coli E110019] gi|194415018|gb|EDX31288.1| protein transporter HofQ [Escherichia coli B171] gi|194425356|gb|EDX41340.1| protein transporter HofQ [Escherichia coli 101-1] gi|242378917|emb|CAQ33712.1| protein involved in utilization of DNA as a carbon source [Escherichia coli BL21(DE3)] gi|253322826|gb|ACT27428.1| type IV pilus secretin PilQ [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975220|gb|ACT40891.1| predicted fimbrial transporter [Escherichia coli B str. REL606] gi|253979376|gb|ACT45046.1| predicted fimbrial transporter [Escherichia coli BL21(DE3)] gi|257756147|dbj|BAI27649.1| predicted fimbrial transporter HofQ [Escherichia coli O26:H11 str. 11368] gi|257761322|dbj|BAI32819.1| predicted fimbrial transporter HofQ [Escherichia coli O103:H2 str. 12009] gi|257766473|dbj|BAI37968.1| predicted fimbrial transporter HofQ [Escherichia coli O111:H- str. 11128] gi|323376744|gb|ADX49012.1| type IV pilus secretin PilQ [Escherichia coli KO11] gi|323959609|gb|EGB55261.1| type IV pilus secretin PilQ [Escherichia coli H489] gi|323969989|gb|EGB65264.1| type IV pilus secretin PilQ [Escherichia coli TA007] gi|332104287|gb|EGJ07633.1| outer membrane porin HofQ [Shigella sp. D9] Length = 412 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|209920843|ref|YP_002294927.1| outer membrane porin HofQ [Escherichia coli SE11] gi|218697071|ref|YP_002404738.1| outer membrane porin HofQ [Escherichia coli 55989] gi|331670209|ref|ZP_08371048.1| protein transport protein HofQ [Escherichia coli TA271] gi|331679451|ref|ZP_08380121.1| protein transport protein HofQ [Escherichia coli H591] gi|209914102|dbj|BAG79176.1| putative transport protein [Escherichia coli SE11] gi|218353803|emb|CAV00141.1| fimbrial transporter [Escherichia coli 55989] gi|323944387|gb|EGB40462.1| type IV pilus secretin PilQ [Escherichia coli H120] gi|324116416|gb|EGC10335.1| type IV pilus secretin PilQ [Escherichia coli E1167] gi|331062271|gb|EGI34191.1| protein transport protein HofQ [Escherichia coli TA271] gi|331072623|gb|EGI43948.1| protein transport protein HofQ [Escherichia coli H591] Length = 412 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|332085619|gb|EGI90783.1| transport protein hofQ [Shigella dysenteriae 155-74] Length = 386 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+VL G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLVLGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|312961914|ref|ZP_07776411.1| general secretion pathway protein D [Pseudomonas fluorescens WH6] gi|311283724|gb|EFQ62308.1| general secretion pathway protein D [Pseudomonas fluorescens WH6] Length = 740 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 107/261 (40%), Gaps = 18/261 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I EV+ +G Q + + + + A+ G + G + G D Sbjct: 473 PLQVQIETRILEVKLTGELDLGVQWYLGRLAGNSTSTTVANASGSQGALGRGGAGLGAAD 532 Query: 253 RF-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 + + LHALE + L+ P+L ++ Q A G + +TG + Sbjct: 533 SLFYSFVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTS 592 Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKA 356 SV GV+L P + G + + IQ +VS+ + P R Sbjct: 593 DTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASTNGDTPANPRISTRSV 652 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V + SG T++L GL+K D +P L KIP L LF ++ +++ TE+ + TP Sbjct: 653 STQVAVQSGQTVLLGGLIKQDNADTVSAVPYLGKIPGLRWLFGSTSKSKDRTELIVLITP 712 Query: 417 FLVKPVAMRDLSRPDDHYSVE 437 ++ + + D Y + Sbjct: 713 RVI--TSSSQARQVTDDYRQQ 731 >gi|331685028|ref|ZP_08385614.1| protein transport protein HofQ [Escherichia coli H299] gi|331077399|gb|EGI48611.1| protein transport protein HofQ [Escherichia coli H299] Length = 412 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTA 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|110643624|ref|YP_671354.1| outer membrane porin HofQ [Escherichia coli 536] gi|191171563|ref|ZP_03033111.1| protein transporter HofQ [Escherichia coli F11] gi|215488672|ref|YP_002331103.1| outer membrane porin HofQ [Escherichia coli O127:H6 str. E2348/69] gi|331649187|ref|ZP_08350273.1| protein transport protein HofQ [Escherichia coli M605] gi|110345216|gb|ABG71453.1| protein transport protein HofQ precursor [Escherichia coli 536] gi|190908190|gb|EDV67781.1| protein transporter HofQ [Escherichia coli F11] gi|215266744|emb|CAS11183.1| predicted fimbrial transporter [Escherichia coli O127:H6 str. E2348/69] gi|281180422|dbj|BAI56752.1| putative transport protein [Escherichia coli SE15] gi|331041685|gb|EGI13829.1| protein transport protein HofQ [Escherichia coli M605] Length = 412 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|309785870|ref|ZP_07680501.1| transport protein hofQ [Shigella dysenteriae 1617] gi|308926990|gb|EFP72466.1| transport protein hofQ [Shigella dysenteriae 1617] Length = 267 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 15 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 73 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 74 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 132 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 133 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 192 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 193 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 252 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 253 RELVVFITPRLV 264 >gi|218706981|ref|YP_002414500.1| outer membrane porin HofQ [Escherichia coli UMN026] gi|293406969|ref|ZP_06650893.1| hofQ [Escherichia coli FVEC1412] gi|298382711|ref|ZP_06992306.1| hofQ [Escherichia coli FVEC1302] gi|218434078|emb|CAR14995.1| fimbrial transporter [Escherichia coli UMN026] gi|291425780|gb|EFE98814.1| hofQ [Escherichia coli FVEC1412] gi|298276547|gb|EFI18065.1| hofQ [Escherichia coli FVEC1302] Length = 412 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|332284397|ref|YP_004416308.1| general secretion pathway protein D [Pusillimonas sp. T7-7] gi|330428350|gb|AEC19684.1| general secretion pathway protein D [Pusillimonas sp. T7-7] Length = 792 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 74/315 (23%), Positives = 120/315 (38%), Gaps = 44/315 (13%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGPSKSFAADFGG 236 S ++V++ L+ QV ++ I EV D + G Q G SS S A+F G Sbjct: 463 SLREVIDQLDQR-RAQVLVESLIVEVSTDKAAEFGIQWMAGGNDLSSGNTSFMGGANFNG 521 Query: 237 KFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTA 279 ++ G ++ + + + ALE L+ P L Sbjct: 522 SGINPSGITTIDALAQGLSLGVVKGTVDILGTEILNLGVLARALESKGDANVLSTPNLMT 581 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + AS G + T +T A +VT D G+ L P + G + + I Sbjct: 582 LDNEEASIIVGRTVPFVTGQYTTSADGASNPFQTVTREDVGLTLRIRPQISEGGTVKMAI 641 Query: 333 QTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS +AG R R +T V + G IVL GLL+D I +P+L I Sbjct: 642 YQEVSSIDGAASSAGAGLITRKRALETNVLVDDGQIIVLGGLLEDTISDSTSAVPVLGDI 701 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P+LG LFR + +R +T + + P +V+ D + +R N + Sbjct: 702 PVLGNLFRYDKRSRTKTNLMVFLRPHIVRN---------------ARDGASVTLDRYNYM 746 Query: 452 YGPKEASEVEGQNYK 466 G + + + Sbjct: 747 RGAQAGLPMRSTWFS 761 >gi|16131268|ref|NP_417850.1| protein required for the utilization of DNA as a carbon source; fimbrial transporter homolog [Escherichia coli str. K-12 substr. MG1655] gi|74313896|ref|YP_312315.1| outer membrane porin HofQ [Shigella sonnei Ss046] gi|89110619|ref|AP_004399.1| predicted fimbrial transporter [Escherichia coli str. K-12 substr. W3110] gi|157158971|ref|YP_001464845.1| outer membrane porin HofQ [Escherichia coli E24377A] gi|170082908|ref|YP_001732228.1| fimbrial transporter [Escherichia coli str. K-12 substr. DH10B] gi|218555936|ref|YP_002388849.1| outer membrane porin HofQ [Escherichia coli IAI1] gi|229774932|ref|YP_690743.2| outer membrane porin HofQ [Shigella flexneri 5 str. 8401] gi|238902482|ref|YP_002928278.1| putative fimbrial transporter [Escherichia coli BW2952] gi|256025882|ref|ZP_05439747.1| outer membrane porin HofQ [Escherichia sp. 4_1_40B] gi|293453697|ref|ZP_06664116.1| hofQ [Escherichia coli B088] gi|307140075|ref|ZP_07499431.1| outer membrane porin HofQ [Escherichia coli H736] gi|331644090|ref|ZP_08345219.1| protein transport protein HofQ [Escherichia coli H736] gi|1170332|sp|P34749|HOFQ_ECOLI RecName: Full=Putative DNA transport protein HofQ; Flags: Precursor gi|606325|gb|AAA58188.1| hopQ [Escherichia coli str. K-12 substr. MG1655] gi|1789793|gb|AAC76416.1| protein required for the utilization of DNA as a carbon source; fimbrial transporter homolog [Escherichia coli str. K-12 substr. MG1655] gi|73857373|gb|AAZ90080.1| putative transport portein [Shigella sonnei Ss046] gi|85676650|dbj|BAE77900.1| predicted fimbrial transporter [Escherichia coli str. K12 substr. W3110] gi|157081001|gb|ABV20709.1| protein transporter HofQ [Escherichia coli E24377A] gi|169890743|gb|ACB04450.1| predicted fimbrial transporter [Escherichia coli str. K-12 substr. DH10B] gi|218362704|emb|CAR00330.1| fimbrial transporter [Escherichia coli IAI1] gi|238862385|gb|ACR64383.1| predicted fimbrial transporter [Escherichia coli BW2952] gi|260447590|gb|ACX38012.1| type IV pilus secretin PilQ [Escherichia coli DH1] gi|291321823|gb|EFE61254.1| hofQ [Escherichia coli B088] gi|315137967|dbj|BAJ45126.1| outer membrane porin HofQ [Escherichia coli DH1] gi|323939390|gb|EGB35601.1| type IV pilus secretin PilQ [Escherichia coli E482] gi|331036384|gb|EGI08610.1| protein transport protein HofQ [Escherichia coli H736] Length = 412 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|297570196|ref|YP_003691540.1| general secretion pathway protein D [Desulfurivibrio alkaliphilus AHT2] gi|296926111|gb|ADH86921.1| general secretion pathway protein D [Desulfurivibrio alkaliphilus AHT2] Length = 690 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 74/272 (27%), Positives = 119/272 (43%), Gaps = 31/272 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222 + V+ L+I Q+ ++ IAE+ +G Q S++G Sbjct: 347 QTVIRQLDIR-RAQLMIEAVIAEISTARAVDLGIQWFSADADKVIGGTNFPGSGASMSGI 405 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAI 280 ++G S AA G + G +L R FSF +++AL R L+ P+L + Sbjct: 406 AAGDEGSIAALAGLGGFNMGVFSGSTEILGREFFSFGALVNALARDGDTNILSTPSLVTM 465 Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332 Q A G + T S + GAT +V D G+ L P V I L+I Sbjct: 466 DNQEAEIIVGQNVPFLTGSFTEGATGVGGSPFQTVERRDVGIKLRVKPQVTEGDVIRLQI 525 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + EVS A + + R +T+V + G +VL GL+ DD+Q+ +PLL IP Sbjct: 526 EQEVSSVERDDLAAGLVT-NTRNINTSVLVEDGKVLVLGGLISDDVQETVSKVPLLGDIP 584 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + GALFR++R R + + + P +++ M Sbjct: 585 LFGALFRHTRSERSKRNLMVFLRPVILRDQEM 616 >gi|213622639|ref|ZP_03375422.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 250 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 118/249 (47%), Gaps = 8/249 (3%) Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAA 232 + K ++ +++ QV L I + L+++G + ++ ++ G + ++ Sbjct: 1 GPGGAGKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSS 59 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 D + F++ G ++ + L ALE+ + +A P L A Q AS G + Sbjct: 60 DLSVAAATSRVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSE 118 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPS 350 Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G++ + Sbjct: 119 IPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLA 178 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ +T VE+ SG T+ L G+ + + +PLL IP LG LFR+ E E+ Sbjct: 179 IDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERREL 238 Query: 411 FIAATPFLV 419 + TP LV Sbjct: 239 VVFITPRLV 247 >gi|91212863|ref|YP_542849.1| outer membrane porin HofQ [Escherichia coli UTI89] gi|117625659|ref|YP_858982.1| outer membrane porin HofQ [Escherichia coli APEC O1] gi|218560448|ref|YP_002393361.1| outer membrane porin HofQ [Escherichia coli S88] gi|237703118|ref|ZP_04533599.1| protein transporter HofQ [Escherichia sp. 3_2_53FAA] gi|91074437|gb|ABE09318.1| protein transport protein HofQ precursor [Escherichia coli UTI89] gi|115514783|gb|ABJ02858.1| putative transport protein HofQ precursor [Escherichia coli APEC O1] gi|218367217|emb|CAR04991.1| fimbrial transporter [Escherichia coli S88] gi|226902382|gb|EEH88641.1| protein transporter HofQ [Escherichia sp. 3_2_53FAA] gi|294490021|gb|ADE88777.1| protein transporter HofQ [Escherichia coli IHE3034] gi|312947939|gb|ADR28766.1| outer membrane porin HofQ [Escherichia coli O83:H1 str. NRG 857C] gi|323950048|gb|EGB45931.1| type IV pilus secretin PilQ [Escherichia coli H252] gi|323954672|gb|EGB50454.1| type IV pilus secretin PilQ [Escherichia coli H263] Length = 412 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|330938634|gb|EGH42200.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 554 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 118/273 (43%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------ 226 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG Sbjct: 280 QTQERLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTY 338 Query: 227 ------------SKSFAADFGGKFVSEGGDFSVKG---VLDRFSFETVLHALERATAIRT 271 S + ++ + G S G V + + L A+E+ Sbjct: 339 GLDNNGDEAGNTSGNLTSNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 398 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 399 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 457 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 458 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 517 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 518 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 550 >gi|188492932|ref|ZP_03000202.1| protein transporter HofQ [Escherichia coli 53638] gi|188488131|gb|EDU63234.1| protein transporter HofQ [Escherichia coli 53638] Length = 412 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|323966201|gb|EGB61637.1| type IV pilus secretin PilQ [Escherichia coli M863] Length = 412 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|331659679|ref|ZP_08360617.1| protein transport protein HofQ [Escherichia coli TA206] gi|331052894|gb|EGI24927.1| protein transport protein HofQ [Escherichia coli TA206] Length = 412 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|331654967|ref|ZP_08355966.1| protein transport protein HofQ [Escherichia coli M718] gi|331046982|gb|EGI19060.1| protein transport protein HofQ [Escherichia coli M718] Length = 412 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|170681657|ref|YP_001745634.1| outer membrane porin HofQ [Escherichia coli SMS-3-5] gi|170519375|gb|ACB17553.1| protein transporter HofQ [Escherichia coli SMS-3-5] Length = 412 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|323164950|gb|EFZ50741.1| transport protein hofQ [Shigella sonnei 53G] Length = 385 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 133 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 191 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 192 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 250 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 251 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 310 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 311 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 370 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 371 RELVVFITPRLV 382 >gi|291619222|ref|YP_003521964.1| HofQ [Pantoea ananatis LMG 20103] gi|291154252|gb|ADD78836.1| HofQ [Pantoea ananatis LMG 20103] Length = 413 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 13/249 (5%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGK 237 + L++ E QV L I + + L ++G I + P Sbjct: 166 IRALDVPLE-QVELAAHIVTISEEHLHELGVNWRLYNEGDVINRALRHPLLDIPLGLNSH 224 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 VS G S + + L ALE+ + +A P L Q+AS G + Y+ Sbjct: 225 DVSVGVTLS---RIGGKLLDLELSALEQENQVEIIASPRLFTSHQQTASIKQGTEIPYEV 281 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRK 355 + ++GATS+ + + + TP VL GRI L+I+ + P V GD + S ++ Sbjct: 282 SAGNSGATSIEFKEAVLGMEVTPAVLGNGRIQLKIRISQNVPGRAVQTGDSQVLSIDKQE 341 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +T V + G T+ L G+ + + +PLL +P++G+LFR + + E+ I T Sbjct: 342 IETQVTVSDGQTLALGGIFHQQRTRGQRQVPLLGNLPVVGSLFRQHAEEQRKRELVIFMT 401 Query: 416 PFLVKPVAM 424 P LV+ A+ Sbjct: 402 PRLVREAAL 410 >gi|229591502|ref|YP_002873621.1| general secretion pathway protein D [Pseudomonas fluorescens SBW25] gi|229363368|emb|CAY50509.1| general secretion pathway protein D [Pseudomonas fluorescens SBW25] Length = 740 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 18/261 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I EV+ +G Q + + + + + G + GG + G D Sbjct: 474 PLQVQIETRILEVKLTGELDLGVQWYLGRLAGNSTSTTVGNTAGSQGALGGGGAGLGAAD 533 Query: 253 RF-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 + + LHALE + L+ P+L ++ Q A G + +TG + Sbjct: 534 SLFYSFVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTS 593 Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKA 356 SV GV+L P + G + + IQ +VS + + + P R Sbjct: 594 DTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASSSNDTQNNPRISTRSV 653 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V + SG T++L GL+K D + +P L +IP L LF N+ +++ TE+ + TP Sbjct: 654 STQVAVQSGQTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITP 713 Query: 417 FLVKPVAMRDLSRPDDHYSVE 437 ++ + + D Y + Sbjct: 714 RVI--TSSSQARQVTDDYRQQ 732 >gi|260912709|ref|ZP_05919195.1| type IV pilus secretin PilQ [Pasteurella dagmatis ATCC 43325] gi|260633087|gb|EEX51252.1| type IV pilus secretin PilQ [Pasteurella dagmatis ATCC 43325] Length = 431 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPSKSFAADFGGKF 238 +Q+ ++ I + + LK++G + + S S+ +F Sbjct: 185 EQIAIEARIVTISDESLKELGVRWGLLNPTELSHRVAGSLDANGFSQISEQLNVNFATSI 244 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 245 TPAGSLALQLAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVT 304 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 S SV + + L TP + +I L + + P + +G++ S ++ Sbjct: 305 SGKNETQSVEFREAVLGLDVTPHISKDNQILLDLVVSQNSPGARVAYGSGEIVSIDKQEI 364 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D + + + +P+L IP++ LFR ++ E+ I TP Sbjct: 365 NTQVVAKDGETIVLGGVFHDSMTKGVDKVPVLGDIPMIKHLFRKQNERHQKRELVIFVTP 424 Query: 417 FLVK 420 ++K Sbjct: 425 RILK 428 >gi|298485082|ref|ZP_07003178.1| Type IV pilus biogenesis protein PilQ [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160334|gb|EFI01359.1| Type IV pilus biogenesis protein PilQ [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 718 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 117/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSF 230 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG ++ Sbjct: 444 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 502 Query: 231 AADFGGKFVSEGGD-------------------FSVKGVLDRFSFETVLHALERATAIRT 271 D G S G + V + + L A+E+ Sbjct: 503 GLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 562 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 563 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 621 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 622 VKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 681 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 682 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 714 >gi|227329158|ref|ZP_03833182.1| putative outer membrane porin HofQ [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 424 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 6/231 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + + L+ +G + +F + + L R Sbjct: 190 QVQLAAHIVTISSEHLQALGVNWGLGEGDVANKALRLNNFNVGLPVDTPAVNAGFHLARL 249 Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + + L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + Sbjct: 250 NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 309 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTI 368 + + TP +L GRI L ++ + P + GD + ++ T V + G TI Sbjct: 310 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 369 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + +PLL ++P+ G LFRN E+ I TP L+ Sbjct: 370 VLGGIFQQQKKNSDRQVPLLGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420 >gi|218702134|ref|YP_002409763.1| outer membrane porin HofQ [Escherichia coli IAI39] gi|331664993|ref|ZP_08365894.1| protein transport protein HofQ [Escherichia coli TA143] gi|218372120|emb|CAR19982.1| fimbrial transporter [Escherichia coli IAI39] gi|331057503|gb|EGI29489.1| protein transport protein HofQ [Escherichia coli TA143] Length = 412 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|195934879|ref|ZP_03080261.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. EC4024] gi|320191599|gb|EFW66249.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7 str. EC1212] gi|326337648|gb|EGD61483.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7 str. 1044] gi|326344601|gb|EGD68350.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7 str. 1125] Length = 386 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|300974788|ref|ZP_07172732.1| type IV pilus secretin PilQ [Escherichia coli MS 45-1] gi|301050407|ref|ZP_07197293.1| type IV pilus secretin PilQ [Escherichia coli MS 185-1] gi|300297875|gb|EFJ54260.1| type IV pilus secretin PilQ [Escherichia coli MS 185-1] gi|300410491|gb|EFJ94029.1| type IV pilus secretin PilQ [Escherichia coli MS 45-1] gi|315291661|gb|EFU51017.1| type IV pilus secretin PilQ [Escherichia coli MS 153-1] Length = 386 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|323974808|gb|EGB69920.1| type IV pilus secretin PilQ [Escherichia coli TW10509] Length = 412 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|297519102|ref|ZP_06937488.1| outer membrane porin HofQ [Escherichia coli OP50] gi|300907468|ref|ZP_07125113.1| type IV pilus secretin PilQ [Escherichia coli MS 84-1] gi|300931080|ref|ZP_07146434.1| type IV pilus secretin PilQ [Escherichia coli MS 187-1] gi|301302267|ref|ZP_07208399.1| type IV pilus secretin PilQ [Escherichia coli MS 124-1] gi|300400806|gb|EFJ84344.1| type IV pilus secretin PilQ [Escherichia coli MS 84-1] gi|300461100|gb|EFK24593.1| type IV pilus secretin PilQ [Escherichia coli MS 187-1] gi|300842430|gb|EFK70190.1| type IV pilus secretin PilQ [Escherichia coli MS 124-1] gi|315255979|gb|EFU35947.1| type IV pilus secretin PilQ [Escherichia coli MS 85-1] gi|320199559|gb|EFW74149.1| Type IV pilus biogenesis protein PilQ [Escherichia coli EC4100B] gi|323154220|gb|EFZ40423.1| transport protein hofQ [Escherichia coli EPECa14] gi|323162775|gb|EFZ48612.1| transport protein hofQ [Escherichia coli E128010] Length = 386 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|330972847|gb|EGH72913.1| general secretion pathway protein D [Pseudomonas syringae pv. aceris str. M302273PT] Length = 775 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 119/309 (38%), Gaps = 21/309 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEV 205 G + + ++ S + + K++ + + QV ++ I EV Sbjct: 454 SGSGGNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEV 513 Query: 206 RRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFE 257 + +G Q + +SG + + G + G ++ F + + Sbjct: 514 QLTGELDMGVQWYLGRLAGNSGTTGNVTNTSGSQGAIGTGGAALASTDAFFYSFVSNNLQ 573 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHD 311 L ALE + L+ P+L ++ Q A G S +T +++ V Sbjct: 574 VALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNSSTDTTLSSVEYVQ 633 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 GV+L P + G + + IQ +VS G +A P R T V SG T+ Sbjct: 634 TGVILDVVPRINPGGLVYMDIQQQVSSADTDTTGNDANGNPRISTRSVATQVAAQSGQTV 693 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + Sbjct: 694 LLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKNRTELIVLITPRVI--TSSSQAR 751 Query: 429 RPDDHYSVE 437 + D Y + Sbjct: 752 QVTDDYRQQ 760 >gi|300822816|ref|ZP_07102952.1| type IV pilus secretin PilQ [Escherichia coli MS 119-7] gi|300524582|gb|EFK45651.1| type IV pilus secretin PilQ [Escherichia coli MS 119-7] gi|324018703|gb|EGB87922.1| type IV pilus secretin PilQ [Escherichia coli MS 117-3] gi|332996422|gb|EGK16049.1| transport protein hofQ [Shigella flexneri VA-6] gi|332996664|gb|EGK16289.1| transport protein hofQ [Shigella flexneri K-272] Length = 386 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|333013071|gb|EGK32447.1| transport protein hofQ [Shigella flexneri K-227] Length = 386 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|301023148|ref|ZP_07186952.1| type IV pilus secretin PilQ [Escherichia coli MS 196-1] gi|299880971|gb|EFI89182.1| type IV pilus secretin PilQ [Escherichia coli MS 196-1] Length = 389 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 137 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 195 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 196 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 254 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 255 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 314 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 315 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 374 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 375 RELVVFITPRLV 386 >gi|90406756|ref|ZP_01214949.1| putative type II secretory pathway, component EpsD [Psychromonas sp. CNPT3] gi|90312209|gb|EAS40301.1| putative type II secretory pathway, component EpsD [Psychromonas sp. CNPT3] Length = 658 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 128/315 (40%), Gaps = 30/315 (9%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAADFG 235 +S V+ L+I QV ++ I E+ + Q + + S G + Sbjct: 330 ASLSSVIRKLDIR-RAQVLVEAIIVEISEGNGINLSVQFATSAGGSQFHGNGATTGDAIN 388 Query: 236 GKF----------VSEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + VS GV+ ++ +L AL +T LA P++ + Q Sbjct: 389 GAYQIRHDGDLSDVSSAISKIAGGVVGYLGSNWGVMLQALSSSTGSNILATPSIMTLDNQ 448 Query: 284 SASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 ASF G + T S+S+ ++ + GV L+ TP + + L I+ EVS Sbjct: 449 EASFLVGDEVPVLTGSTSSDDNDNPFQTIERKEIGVKLNVTPQINEGDSVQLVIEQEVSS 508 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 N D+ + R TTV + SG TIV+ GL+ + + + + IPLL IP LG LF Sbjct: 509 IKDSTNTVDV-VFSTRSVKTTVLVKSGQTIVIGGLIDEKVIESVDKIPLLGDIPWLGNLF 567 Query: 399 RNSRFNREETEIFIAATPFLVKP------VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +++R E+ + I +++ ++MR S D + + Sbjct: 568 KSTRNTTEKRNLMIFLRATIIRDDVTMNELSMRKYSMIRDMQKKQREIGINLMPNSESPL 627 Query: 453 GPK--EASEVEGQNY 465 P+ + E++ + Sbjct: 628 LPEWGKTQEIDADTF 642 >gi|320197345|gb|EFW71960.1| Type IV pilus biogenesis protein PilQ [Escherichia coli WV_060327] Length = 386 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTA 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|300898927|ref|ZP_07117225.1| type IV pilus secretin PilQ [Escherichia coli MS 198-1] gi|300357442|gb|EFJ73312.1| type IV pilus secretin PilQ [Escherichia coli MS 198-1] Length = 386 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|300987128|ref|ZP_07178014.1| type IV pilus secretin PilQ [Escherichia coli MS 200-1] gi|300306272|gb|EFJ60792.1| type IV pilus secretin PilQ [Escherichia coli MS 200-1] gi|323189024|gb|EFZ74308.1| transport protein hofQ [Escherichia coli RN587/1] gi|324009420|gb|EGB78639.1| type IV pilus secretin PilQ [Escherichia coli MS 57-2] gi|324014615|gb|EGB83834.1| type IV pilus secretin PilQ [Escherichia coli MS 60-1] gi|330909424|gb|EGH37938.1| type 4 pilus biogenesis protein PilQ [Escherichia coli AA86] Length = 386 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|332345342|gb|AEE58676.1| transport protein PilQ [Escherichia coli UMNK88] Length = 386 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|284923383|emb|CBG36477.1| protein transport protein [Escherichia coli 042] Length = 386 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|300815414|ref|ZP_07095639.1| type IV pilus secretin PilQ [Escherichia coli MS 107-1] gi|300919331|ref|ZP_07135842.1| type IV pilus secretin PilQ [Escherichia coli MS 115-1] gi|300926924|ref|ZP_07142688.1| type IV pilus secretin PilQ [Escherichia coli MS 182-1] gi|300946869|ref|ZP_07161109.1| type IV pilus secretin PilQ [Escherichia coli MS 116-1] gi|300956717|ref|ZP_07168988.1| type IV pilus secretin PilQ [Escherichia coli MS 175-1] gi|301329693|ref|ZP_07222442.1| type IV pilus secretin PilQ [Escherichia coli MS 78-1] gi|301645828|ref|ZP_07245743.1| type IV pilus secretin PilQ [Escherichia coli MS 146-1] gi|309794656|ref|ZP_07689078.1| type IV pilus secretin PilQ [Escherichia coli MS 145-7] gi|110616771|gb|ABF05438.1| putative transport portein [Shigella flexneri 5 str. 8401] gi|300316473|gb|EFJ66257.1| type IV pilus secretin PilQ [Escherichia coli MS 175-1] gi|300413587|gb|EFJ96897.1| type IV pilus secretin PilQ [Escherichia coli MS 115-1] gi|300417082|gb|EFK00393.1| type IV pilus secretin PilQ [Escherichia coli MS 182-1] gi|300453478|gb|EFK17098.1| type IV pilus secretin PilQ [Escherichia coli MS 116-1] gi|300532306|gb|EFK53368.1| type IV pilus secretin PilQ [Escherichia coli MS 107-1] gi|300844205|gb|EFK71965.1| type IV pilus secretin PilQ [Escherichia coli MS 78-1] gi|301075906|gb|EFK90712.1| type IV pilus secretin PilQ [Escherichia coli MS 146-1] gi|308121706|gb|EFO58968.1| type IV pilus secretin PilQ [Escherichia coli MS 145-7] gi|315619010|gb|EFU99593.1| transport protein hofQ [Escherichia coli 3431] gi|320181878|gb|EFW56784.1| Type IV pilus biogenesis protein PilQ [Shigella boydii ATCC 9905] gi|323182850|gb|EFZ68251.1| transport protein hofQ [Escherichia coli 1357] gi|332085536|gb|EGI90702.1| transport protein hofQ [Shigella boydii 5216-82] Length = 386 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|326796946|ref|YP_004314766.1| type II and III secretion system protein [Marinomonas mediterranea MMB-1] gi|326547710|gb|ADZ92930.1| type II and III secretion system protein [Marinomonas mediterranea MMB-1] Length = 398 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 5/230 (2%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 A Q+ ++ IA+V R K +G T G ++ + +V+ Sbjct: 170 APVRQIEIQAHIAQVHRSAQKTLGVNWQ-TVIEDGTRQALTGMVNLNAIGATSSLAVETT 228 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +L ALE +++P + GQSA SG + Y+ T+V Sbjct: 229 RGSSRLSLLLDALETDGFANVISKPKIVTAEGQSARIESGTEIPYQV--QHDDVTTVEFR 286 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 G++L TP V G + L + +G +PS + +T VE+ G T+VL Sbjct: 287 QAGLMLEVTPIVKEQGVLRLDLNIHQD--SVGEMVNGVPSLETNRLNTQVEVKDGETLVL 344 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G+ + + + +P+ +P+LGALFR+ E+ E+ + TP L++ Sbjct: 345 GGIFRQEKFENISKVPVFGDLPVLGALFRHRSDKTEKVELLVFITPKLLQ 394 >gi|157162867|ref|YP_001460185.1| outer membrane porin HofQ [Escherichia coli HS] gi|254038556|ref|ZP_04872612.1| transporter HofQ [Escherichia sp. 1_1_43] gi|157068547|gb|ABV07802.1| protein transporter HofQ [Escherichia coli HS] gi|226839062|gb|EEH71085.1| transporter HofQ [Escherichia sp. 1_1_43] gi|323934619|gb|EGB31019.1| type IV pilus secretin PilQ [Escherichia coli E1520] Length = 412 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP+ G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|301019596|ref|ZP_07183756.1| type IV pilus secretin PilQ [Escherichia coli MS 69-1] gi|300399184|gb|EFJ82722.1| type IV pilus secretin PilQ [Escherichia coli MS 69-1] Length = 386 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|327251020|gb|EGE62713.1| transport protein hofQ [Escherichia coli STEC_7v] Length = 386 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKAALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|302189475|ref|ZP_07266148.1| type II and III secretion system protein:NolW-like:NolW-like [Pseudomonas syringae pv. syringae 642] Length = 701 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + Q +++++ L+I QV ++ I E D KQ+G + + SG S A Sbjct: 427 QTQERLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGRTNISGTSNWSAG 485 Query: 233 DFGGKFVSEGGDFSVKG---------------------VLDRFSFETVLHALERATAIRT 271 + G + G V + + L A+E+ Sbjct: 486 GLDNRGDEAGNTGNSLGPNIPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEI 545 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697 >gi|307311947|ref|ZP_07591585.1| type IV pilus secretin PilQ [Escherichia coli W] gi|306908091|gb|EFN38591.1| type IV pilus secretin PilQ [Escherichia coli W] gi|315062668|gb|ADT76995.1| dsDNA transporter subunit [Escherichia coli W] Length = 402 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 150 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 208 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 209 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 267 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 268 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 327 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 328 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 387 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 388 RELVVFITPRLV 399 >gi|312968303|ref|ZP_07782513.1| transport protein hofQ [Escherichia coli 2362-75] gi|312287128|gb|EFR15038.1| transport protein hofQ [Escherichia coli 2362-75] Length = 386 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|187731764|ref|YP_001882066.1| outer membrane porin HofQ [Shigella boydii CDC 3083-94] gi|187428756|gb|ACD08030.1| protein transporter HofQ [Shigella boydii CDC 3083-94] Length = 412 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|306816271|ref|ZP_07450409.1| outer membrane porin HofQ [Escherichia coli NC101] gi|222035093|emb|CAP77838.1| Protein transport protein hofQ [Escherichia coli LF82] gi|305850667|gb|EFM51124.1| outer membrane porin HofQ [Escherichia coli NC101] gi|307628452|gb|ADN72756.1| outer membrane porin HofQ [Escherichia coli UM146] gi|315286025|gb|EFU45463.1| type IV pilus secretin PilQ [Escherichia coli MS 110-3] Length = 386 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|330886181|gb|EGH20082.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. mori str. 301020] Length = 428 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG K Sbjct: 154 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 212 Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271 A + G S + V + + L A+E+ Sbjct: 213 GLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 272 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 273 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 331 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 332 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 391 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 392 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 424 >gi|315295914|gb|EFU55227.1| type IV pilus secretin PilQ [Escherichia coli MS 16-3] Length = 386 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|251793894|ref|YP_003008626.1| protein transport protein HofQ [Aggregatibacter aphrophilus NJ8700] gi|247535293|gb|ACS98539.1| protein transport protein HofQ [Aggregatibacter aphrophilus NJ8700] Length = 474 Score = 197 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 71/324 (21%), Positives = 132/324 (40%), Gaps = 23/324 (7%) Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 ++ E T++ A ++ ++ ++ G + + S + S L Q Sbjct: 124 VMTEEPTRLTTATIKLHFAKASEVMKSLTGG---SGSLLSPNGSLTFDDRSNLLLIQDEP 180 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----------ITGSS 223 AN KK++ L+ E Q+ ++ I + + LK++G + I GS Sbjct: 181 KSIAN--LKKLIKELDKPIE-QIAIEARIVTMNGESLKELGVRWGMFNPTENAHRIGGSL 237 Query: 224 SGP-----SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 +G + +F G ++ + L ALER + +A P L Sbjct: 238 AGNGFDNITNQLNVNFPTATTPAGSVALQVAKINGRLLDLELTALERENNVEIIASPRLL 297 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + ++AS G + Y V+ +G+ SV + + L TP + +I L + + Sbjct: 298 TTNKKAASIKQGTELPYILVNEKSGSQSVEFREAVLGLEVTPHISQDKQILLDLVVSQNA 357 Query: 339 PVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 P V G++ S ++ +T V G TIVL G+ D I + + +PLL IP + Sbjct: 358 PGSRVAHGLGEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKNVDKVPLLGDIPGVKH 417 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 LF ++ E+ I TP +++ Sbjct: 418 LFSKESERHQKRELVIFVTPHILR 441 >gi|66043674|ref|YP_233515.1| type II and III secretion system protein:NolW-like:NolW-like [Pseudomonas syringae pv. syringae B728a] gi|63254381|gb|AAY35477.1| type II and III secretion system protein:NolW-like:NolW-like [Pseudomonas syringae pv. syringae B728a] Length = 718 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 119/273 (43%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSF 230 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG ++ Sbjct: 444 QTQERLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTY 502 Query: 231 AADFGG--------------KFVSEGGDFSVKGV-----LDRFSFETVLHALERATAIRT 271 D G FV G + G+ + + L A+E+ Sbjct: 503 GLDNNGDEAGNTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 562 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 563 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 621 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 622 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 681 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 682 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 714 >gi|88861010|ref|ZP_01135645.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas tunicata D2] gi|88816938|gb|EAR26758.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas tunicata D2] Length = 659 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 108/262 (41%), Gaps = 24/262 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSFAA------- 232 ++++ L++A QV ++ + VR + + +G + + + G + + A Sbjct: 400 RRMVETLDVA-VKQVVIESRMVTVRDSVQEDLGIRWGFSDQQLTDGIAGTLAGAQKISNG 458 Query: 233 -----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + + + D + L ALE+ +A P +T + Sbjct: 459 VIPTLAERLNVNLAVTNPAGSIGMHIAKLADGTLIDLELSALEQENKAEIIASPRITTAN 518 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-- 339 + A G + Y +SS GAT+V + L TP + ++ L + P Sbjct: 519 QKKARIEQGTEIPYVQAASS-GATTVEFKKAVLSLEVTPHITPDNKVILDLVITQDTPGD 577 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + G+ + ++ T V + +G TIVL G+ + + +PLL IP LGALF+ Sbjct: 578 TVQTPTGNAVAINTQEIRTQVLVENGQTIVLGGIYQQQVINSSSKVPLLGDIPYLGALFK 637 Query: 400 NSRFNREETEIFIAATPFLVKP 421 + E+ E+ I TP ++K Sbjct: 638 RTSEKTEKKELLIFVTPKILKD 659 >gi|212634883|ref|YP_002311408.1| type II and III secretion system protein:NolW-like protein [Shewanella piezotolerans WP3] gi|212556367|gb|ACJ28821.1| Type II and III secretion system protein:NolW-like protein [Shewanella piezotolerans WP3] Length = 688 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 72/300 (24%), Positives = 128/300 (42%), Gaps = 26/300 (8%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRN-QYANSSSKKVMNLLNIAGEDQVTLKVTI 202 ++L G ++ S+ +V + E + ++ + S +++ +L+I + QV ++ + Sbjct: 387 AILLKGEDSSLLSSRGSVAVDERTNTLLVKDTEETLESIYRLIEVLDIPIK-QVLIEARM 445 Query: 203 AEVRRDILKQIGFQHSITGSSS--GPSKSF--AADFGGKFVSEGGD-------------- 244 V+ D+ + +G + +T G S S A D + D Sbjct: 446 VTVKDDVAEDLGVRWGVTDQQGTKGTSGSLEGANDIAAGILPSLNDRLNVNLPAAPVNAT 505 Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 FSV + D + L ALE+ +A P + + ++A G + Y SSS Sbjct: 506 SIAFSVAKLADGTVLDLELSALEQENKGEIIASPRIMTSNQKAAYIEQGVEIPYVEASSS 565 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTT 359 GAT+VT + L TP + R+ L ++ V+ G+ S ++ T Sbjct: 566 -GATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKVVATPTGEAVSIDTQRIGTQ 624 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + G TIVL G+ + + +PLL IP LG +FR++ E E+ I TP +V Sbjct: 625 VLVDHGETIVLGGIYQQQLISRVSKVPLLGDIPYLGFMFRSTSDKNERQELLIFVTPKIV 684 >gi|77456637|ref|YP_346142.1| type II and III secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77380640|gb|ABA72153.1| pilus secretin [Pseudomonas fluorescens Pf0-1] Length = 692 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 112/271 (41%), Gaps = 21/271 (7%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + Q ++++ L+I QV ++ I E D K +G + + + G + Sbjct: 420 QTQDRLDELRRIVAQLDIP-VRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGV 478 Query: 233 DFGGKF-------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G V+ + + D + L A+E+ ++ Sbjct: 479 SNGSSTTIGTPGSTSTNSPFVDMGTVNNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVS 538 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 +P + ++A G + Y+ SSS GATSV+ + + L TP + RI + ++ Sbjct: 539 QPKVVTSDKETAKILKGTEIPYQEASSS-GATSVSFKEASLSLEVTPQITPDNRIIMEVK 597 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 EP D+P + + + V + G TIV+ G+ + ++ + +P L +P Sbjct: 598 VTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFLGDVPY 657 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM 424 LG LFR + +++E+ + TP ++ A+ Sbjct: 658 LGRLFRRDVVSEKKSELLVFLTPRIMNNQAI 688 >gi|191167908|ref|ZP_03029712.1| protein transporter HofQ [Escherichia coli B7A] gi|190902081|gb|EDV61826.1| protein transporter HofQ [Escherichia coli B7A] Length = 412 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 119/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGV 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|330964738|gb|EGH64998.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 701 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG K Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTY 485 Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271 A + G S + V + + L A+E+ Sbjct: 486 GLDDNGDEAGNTSGNLTSNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697 >gi|320330838|gb|EFW86812.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. glycinea str. race 4] Length = 701 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG K Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 485 Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271 A + G S + V + + L A+E+ Sbjct: 486 GLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697 >gi|257483507|ref|ZP_05637548.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330984730|gb|EGH82833.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009590|gb|EGH89646.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 701 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG K Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 485 Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271 A + G S + V + + L A+E+ Sbjct: 486 GLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697 >gi|71733370|ref|YP_272697.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553923|gb|AAZ33134.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. phaseolicola 1448A] Length = 701 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG K Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 485 Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271 A + G S + V + + L A+E+ Sbjct: 486 GLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697 >gi|145632680|ref|ZP_01788414.1| competence protein E [Haemophilus influenzae 3655] gi|144986875|gb|EDJ93427.1| competence protein E [Haemophilus influenzae 3655] Length = 401 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 142 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLAGNSFENIADNLNVNFATTT 201 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 202 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 261 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 262 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 321 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 322 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 381 Query: 417 FLVK 420 ++K Sbjct: 382 HILK 385 >gi|251787909|ref|YP_003002630.1| putative outer membrane porin HofQ [Dickeya zeae Ech1591] gi|247536530|gb|ACT05151.1| type IV pilus secretin PilQ [Dickeya zeae Ech1591] Length = 433 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 6/237 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251 QV L I + + LK +G + + +F E + L Sbjct: 194 QVQLAAHIVTISSEHLKALGVNWGLGDGMATGQALQMNNFNVSLPIESPAINAGFHLAKL 253 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + + L ALE+ + +A P L Q+AS G + Y+ S ++G+TS+ + Sbjct: 254 NGRLLDLELMALEQENEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 313 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368 + + TP +L G+I L + + P + G++ + ++ T V + G TI Sbjct: 314 AVLGMEVTPRILHGGQITLNLLISQNMPGRAIKQGENGEILAIDKQEIQTQVTVQDGETI 373 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 VL G+ + Q + +P L +P +GA FR+ E+ I TP L++ + Sbjct: 374 VLGGIFQQQKNQAERQVPGLGALPGIGAWFRSGNRQHTRRELVIFITPTLIQAAKRK 430 >gi|170018373|ref|YP_001723327.1| outer membrane porin HofQ [Escherichia coli ATCC 8739] gi|169753301|gb|ACA76000.1| type IV pilus secretin PilQ [Escherichia coli ATCC 8739] Length = 386 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP+ G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|330877965|gb|EGH12114.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 701 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG K Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTY 485 Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271 A + G S + V + + L A+E+ Sbjct: 486 GLDNNGDEAGNTSGNLTSNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697 >gi|320322061|gb|EFW78157.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. glycinea str. B076] Length = 701 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG K Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 485 Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271 A + G S + V + + L A+E+ Sbjct: 486 GLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697 >gi|261823291|ref|YP_003261397.1| outer membrane porin HofQ [Pectobacterium wasabiae WPP163] gi|261607304|gb|ACX89790.1| type IV pilus secretin PilQ [Pectobacterium wasabiae WPP163] Length = 424 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 6/231 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + + L+ +G + ++ +F + + L R Sbjct: 190 QVQLAAHIVTISSEHLQALGVNWGLGEGNAANKALRLNNFNVGLPVDTPAVNAGFHLARL 249 Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + + L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + Sbjct: 250 NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 309 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTI 368 + + TP +L GRI L ++ + P + GD + ++ T V + G TI Sbjct: 310 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 369 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + +P+L ++P+ G LFRN E+ I TP L+ Sbjct: 370 VLGGIFQQQKKNSGSQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420 >gi|330872058|gb|EGH06207.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. glycinea str. race 4] Length = 681 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG K Sbjct: 407 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 465 Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271 A + G S + V + + L A+E+ Sbjct: 466 GLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 525 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 526 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 584 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 585 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 644 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 645 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 677 >gi|320175756|gb|EFW50842.1| Type IV pilus biogenesis protein PilQ [Shigella dysenteriae CDC 74-1112] Length = 386 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|327395552|dbj|BAK12974.1| protein transport protein HofQ precursor HofQ [Pantoea ananatis AJ13355] Length = 430 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 109/245 (44%), Gaps = 13/245 (5%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGK 237 + L++ E QV L I + + L ++G I + P + Sbjct: 176 IGALDVPLE-QVELAAHIVTISEEHLHELGVNWRLYNEGDVINRALRHPLLDISLGLNSH 234 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 VS G S + + L ALE+ + +A P L Q+AS G + Y+ Sbjct: 235 DVSVGVTLS---RIGGKLLDLELSALEQENQVEIIASPRLFTSHQQTASIKQGTEIPYEV 291 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRK 355 + ++GATS+ + + + TP VL GRI L+I+ + P V GD + S ++ Sbjct: 292 SAGNSGATSIEFKEAVLGMEVTPAVLGNGRIQLKIRISQNVPGRAVQTGDSQVLSIDKQE 351 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +T V + G T+ L G+ + + +PLL +P++G+LFR + + E+ I T Sbjct: 352 IETQVTVSDGQTLALGGIFHQQRTRGQRQVPLLGNLPVVGSLFRQHAEEQRKRELVIFMT 411 Query: 416 PFLVK 420 P LV+ Sbjct: 412 PRLVQ 416 >gi|207723669|ref|YP_002254067.1| type II secretory pathway, gspd-related protein [Ralstonia solanacearum MolK2] gi|206588873|emb|CAQ35835.1| type II secretory pathway, gspd-related protein [Ralstonia solanacearum MolK2] Length = 778 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 89/404 (22%), Positives = 157/404 (38%), Gaps = 61/404 (15%) Query: 51 SIGLNKVIILQVPVDVQD-VLVSDPTKADVV--VHSPRTMYLFGKNVGQANVILI--GHD 105 + GLN + V D++ + VS+ T D V + + K V AN + I Sbjct: 213 TTGLNVIFDRDVRTDLKTTIFVSNATLEDTVDMILMQSQL---AKKVMNANTVFIYPATA 269 Query: 106 GKQMLNLDILI------ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 KQ D+ + D H+E L+ + I + ++TV + +I+ ++R Sbjct: 270 AKQQEYQDLKVRTFQLSNTDAKHIEALLKSLLKIKEIVTDERANTVSIRATPESIRVAER 329 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + E +V L+V + EV RD L +G Sbjct: 330 MIAAQD-------------------------LPEPEVMLEVEVLEVSRDRLTDLGIDWPN 364 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + + PS AA +G + G+ +F+ T LA P + Sbjct: 365 SFTLGTPSS--AATWGDLHHLTINRLTASGLSATANFKL------TDTDANLLASPRIRT 416 Query: 280 ISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + + A G + + SS + S+ D G+ L P V +G+++ Sbjct: 417 RNKEKAKILIGDKVPVISSSSVPSTSGPVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMS 476 Query: 334 TEVSEPVIGVNAGDMPS--------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 EVS +++ + + R A T++ L G T VL GL++D+ + + Sbjct: 477 LEVSNITQIISSSNAQTGLSSLAYQIGTRNASTSLRLKDGETQVLGGLIQDEDRDAANKV 536 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 P L ++P+LG LF N + ++TEI + TP +V+P D Sbjct: 537 PGLGQLPVLGRLFSNHNGDHKKTEIVLQITPHIVRPQPAADADT 580 >gi|119477881|ref|ZP_01618004.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2143] gi|119449042|gb|EAW30283.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2143] Length = 689 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 72/345 (20%), Positives = 127/345 (36%), Gaps = 43/345 (12%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 D L + L + + R+ ++ L G ++ Sbjct: 292 ADATELSVVLSKVAQNME-RMSENNEKTRLAGKSEATIEADDGTNSLIVTAEADTMQLLL 350 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 V+ L+I QV ++V I E+ + + +G + S G S + G Sbjct: 351 A-----VVAKLDIR-RAQVQVEVIIVEMTDNDGRDLGVEWLFINDSGGYGASNNSGLGST 404 Query: 238 FVSE-------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTL 272 G + + D SF V++AL++ + L Sbjct: 405 IAGAAFETNNNGSSVDARGGIAEAIGGAAGQVLGIGRLDDDLSFNVVVNALQQNSEANIL 464 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTV 322 + P+L + + ASF G + T S + + +V + G+ L TP + Sbjct: 465 STPSLLTLDNEEASFVVGQSIPFVTGSYTATGSSSSNPDNPFQTVERENVGITLRVTPQI 524 Query: 323 LSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + L I EVS + P RK +TT+ +G TIVL GL++D+I + Sbjct: 525 NEGDSLILAISQEVSNVIGTSTILNSNPITSERKIETTILADNGQTIVLGGLIEDNITES 584 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + +P+L IP LG LFR++ + + + I P +V+ D Sbjct: 585 IQKVPILGDIPFLGRLFRSTSTSVGKKNLLIFLRPTIVRDKRQMD 629 >gi|315125412|ref|YP_004067415.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas sp. SM9913] gi|315013925|gb|ADT67263.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas sp. SM9913] Length = 696 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 106/261 (40%), Gaps = 24/261 (9%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---------- 229 S ++++ L+I QV ++ + VR ++ + +G + + S Sbjct: 435 SVRRMVETLDIP-VKQVVIEARMVTVRDNVTEDLGVRWGFSDQQGSDGVSGTLEGAETIS 493 Query: 230 ----------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + S + + + + L ALE +A P +TA Sbjct: 494 NGNIPSLSDRLNVNLPVANPSASIGMHIAKLANGTLIDLELTALEEENKGEIIASPRITA 553 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + Q A G + Y S+S+GAT+V+ + L TP + ++ L + Sbjct: 554 ANQQKARIEQGTEIPYVE-SASSGATTVSFKKAVLSLEVTPHITPDNKVILNLIITQDTR 612 Query: 340 VIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 V G P+ ++ +T V + +G T+VL G+ + I + +PLL +P +G L Sbjct: 613 GDTVQTGTGPAVAIDTQQIETQVLVENGQTVVLGGIFQQQIINSTKKVPLLGDLPYVGRL 672 Query: 398 FRNSRFNREETEIFIAATPFL 418 F+++ E+ E+ I TP + Sbjct: 673 FKSTSEFNEKRELLIFVTPKI 693 >gi|289648291|ref|ZP_06479634.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. aesculi str. 2250] Length = 701 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 117/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSF 230 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG ++ Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 485 Query: 231 AADFGGKFVSEGGD-------------------FSVKGVLDRFSFETVLHALERATAIRT 271 D G S G + V + + L A+E+ Sbjct: 486 GLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 605 VKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697 >gi|289625073|ref|ZP_06458027.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330865718|gb|EGH00427.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 701 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 117/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSF 230 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG ++ Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNGKWTTY 485 Query: 231 AADFGGKFVSEGGD-------------------FSVKGVLDRFSFETVLHALERATAIRT 271 D G S G + V + + L A+E+ Sbjct: 486 GLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 605 VKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697 >gi|300937316|ref|ZP_07152157.1| type IV pilus secretin PilQ [Escherichia coli MS 21-1] gi|300457639|gb|EFK21132.1| type IV pilus secretin PilQ [Escherichia coli MS 21-1] Length = 386 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSTLEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|148874|gb|AAA24947.1| ORF 1 [Haemophilus influenzae] Length = 371 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 17/244 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPS-----KSFAADFGGKF 238 +Q+ ++ I + + LK++G + I GS +G S + +F Sbjct: 112 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 171 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER + +A P L + +SAS G + Y Sbjct: 172 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 231 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKA 356 ++ SV + + L TP + I L + + P + ++ S ++ Sbjct: 232 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 291 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ I TP Sbjct: 292 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 351 Query: 417 FLVK 420 ++K Sbjct: 352 HILK 355 >gi|261867159|ref|YP_003255081.1| protein transport protein HofQ [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412491|gb|ACX81862.1| protein transport protein HofQ [Aggregatibacter actinomycetemcomitans D11S-1] Length = 469 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 90/447 (20%), Positives = 166/447 (37%), Gaps = 32/447 (7%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIK----EANAAVINISDVEIGKGKKISI--GLNKV 57 L R + F S A+ P+ + V + + + + I L Sbjct: 5 LSRRLKCGLFFGCFLSLAVQAEQNPVFSIRLKQAPLVPTLQQLALAHNTNLIIDDELQGT 64 Query: 58 IILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 + LQ+ VD+ + S + + +Y F K G N G + + Sbjct: 65 VSLQLENVDLDQLFRSVAKIKQLDLWQENGIYYFTK--GDTNTKFAGKMEEPFPLSLPMA 122 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 E T++ A ++ ++ ++ G + + S + S L Q Sbjct: 123 EEPAQLTTATIKLHFAKASEVMKSLTGG---SGSLLSPNGSITFDDRSNLLLIQDEPRSV 179 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGP 226 N KK++ L+ E Q+ ++ I + + LK++G + I GS +G Sbjct: 180 RN--IKKLIKELDKPIE-QIAIEARIVTINDESLKELGVRWGIFSPTDNAHRIGGSLAGN 236 Query: 227 S-----KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 +F G ++ + L ALER + +A P L + Sbjct: 237 GFDNLVNQLNVNFPTTTTPAGSVALQVAKINGRLLDLELTALERENNVEIIASPRLLTTN 296 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV- 340 +SAS G + Y V+ +G+ SV + + L TP + +I L + + P Sbjct: 297 KKSASIKQGTELPYILVNEKSGSQSVEFREAVLGLEVTPHISQDKQILLDLIVSQNSPGS 356 Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + G++ S ++ +T V G TIVL G+ D I + + +P+L IP + LF Sbjct: 357 RVAYGLGEVVSIDKQEINTQVFAKDGETIVLGGVFSDTITKGTDKVPVLGDIPGIKHLFS 416 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRD 426 ++ E+ I TP +++ D Sbjct: 417 KESERHQKRELVIFVTPHILRKGETPD 443 >gi|227112152|ref|ZP_03825808.1| putative outer membrane porin HofQ [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 420 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 6/231 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + + L+ +G + S+ +F + + L R Sbjct: 186 QVQLAAHIVTISSEHLQALGVNWGLGEGSAANKALRLNNFNVGLPVDTPAINAGFHLARL 245 Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + + L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + Sbjct: 246 NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 305 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTI 368 + + TP +L GRI L ++ + P + GD + ++ T V + G TI Sbjct: 306 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 365 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + +P+L ++P+ G LFRN E+ I TP L+ Sbjct: 366 VLGGIFQQQKKNSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 416 >gi|312972346|ref|ZP_07786520.1| transport protein hofQ [Escherichia coli 1827-70] gi|310334723|gb|EFQ00928.1| transport protein hofQ [Escherichia coli 1827-70] Length = 386 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGNDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP+ G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|325294586|ref|YP_004281100.1| general secretion pathway protein D [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065034|gb|ADY73041.1| general secretion pathway protein D [Desulfurobacterium thermolithotrophum DSM 11699] Length = 630 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 17/253 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+V++ ++I QV ++V I E+ D L Q+G + S G F G + Sbjct: 330 KEVIDSVDIKRP-QVFVEVQIVEMSMDKLLQLGVEWKFL--SRGNLVPFGGSLYGNLPLQ 386 Query: 242 GGDFSVKGVL---------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G S L D +L+A + + +A P + + + A Sbjct: 387 AGYPSASPGLLLGIAKWRGDTPDIGLLLNAYAKEGGVNVIATPQILTLDNEEAEINISKV 446 Query: 293 HLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-D 347 Y T +++ S D G+ L TP + + G + L+I +V + V NA Sbjct: 447 IPYSTGVKYDANNNPVISYDYKDVGITLKITPHITASGEVRLKIYEKVEDVVGYANADQT 506 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P R+A TTV++ G T+V+ GL+K E +P+L IP+LG LF+ + E+ Sbjct: 507 APITSKREAKTTVDVQDGQTLVIGGLIKSKKLTTIEKVPVLGNIPVLGNLFKKTGHQIEK 566 Query: 408 TEIFIAATPFLVK 420 T + + TP +V+ Sbjct: 567 TNLLVFITPRVVR 579 >gi|293390985|ref|ZP_06635319.1| protein transport protein HofQ [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951519|gb|EFE01638.1| protein transport protein HofQ [Aggregatibacter actinomycetemcomitans D7S-1] Length = 469 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 90/447 (20%), Positives = 166/447 (37%), Gaps = 32/447 (7%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIK----EANAAVINISDVEIGKGKKISI--GLNKV 57 L R + F S A+ P+ + V + + + + I L Sbjct: 5 LSRWLKCGLFFGCFLSLTVQAEQNPVFSIRLKQAPLVPTLQQLALAHNTNLIIDDELQGT 64 Query: 58 IILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 + LQ+ VD+ + S + + +Y F K G N G + + Sbjct: 65 VSLQLENVDLDQLFRSVAKIKQLDLCQENGIYYFIK--GDTNTKFAGKMEEPFPLSLPMA 122 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 E T++ A ++ ++ ++ G + + S + S L Q Sbjct: 123 EEPAQLTTATIKLHFAKASEVMKSLTGG---SGSLLSPNGSITFDDRSNLLLIQDEPRSV 179 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGP 226 N KK++ L+ E Q+ ++ I + + LK++G + I GS +G Sbjct: 180 RN--IKKLIKELDKPIE-QIAIEARIVTINDESLKELGVRWGIFNPTENAHRIGGSLAGN 236 Query: 227 S-----KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 +F G ++ + L ALER + +A P L + Sbjct: 237 GFDNLVNQLNVNFPTTTTPAGSVALQVAKINGRLLDLELTALERENNVEIIASPRLLTTN 296 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV- 340 +SAS G + Y V+ +G+ SV + + L TP + +I L + + P Sbjct: 297 KKSASIKQGTELPYILVNEKSGSQSVEFREAVLGLEVTPHISQDKQILLDLIVSQNSPGS 356 Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + G++ S ++ +T V G TIVL G+ D I + + +P+L IP + LF Sbjct: 357 RVAYGLGEVVSIDKQEINTQVFAKDGETIVLGGVFSDTITKGTDKVPVLGDIPGIKHLFS 416 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRD 426 ++ E+ I TP +++ D Sbjct: 417 KESERHQKRELVIFVTPHILRKGETPD 443 >gi|78484595|ref|YP_390520.1| type II and III secretion system protein [Thiomicrospira crunogena XCL-2] gi|78362881|gb|ABB40846.1| Type II secretion pathway protein D [Thiomicrospira crunogena XCL-2] Length = 703 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 77/393 (19%), Positives = 150/393 (38%), Gaps = 46/393 (11%) Query: 58 IILQVPVDVQD---VLVSDPTKADVVVHSPRTMYLF----GKNVGQANVILIGHDGKQML 110 +IL D + L++D DV V S + + K V+ + +L Sbjct: 230 VILSGDQDTRREMRALIAD---LDVSVPSEGRVQVIYLHYAKAAELVPVLQKIATNRSLL 286 Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + + D E T+ + ++V + D + + ++ A+ +S Sbjct: 287 S---SVSSDAKTSEATIPDATGN-GVQVNQLDDKTLKSRISIEAEERMNAIIISA----- 337 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 S K V+ L+I QV ++ + EV ++G + G + +F Sbjct: 338 ---PPGVVSVLKTVIKQLDIR-RAQVLIEAILVEVTETKQAELGVEWGAAGPNGVGLINF 393 Query: 231 AADFGGKFVSEGGDFSVKGVL-------------DRFSFETVLHALERATAIRTLAEPTL 277 + + G + + D + ++ AL + L+ PTL Sbjct: 394 SGTIPTIIGNAGNPAAQANAIGTGVNAAFGEVSADGTGWGALIRALNSDSEANILSTPTL 453 Query: 278 TAISGQSASFTSGGQHLYKTVSSS---------TGATSVTTHDYGVVLHFTPTVLSPGRI 328 + + A G + ++T S + ++ + G+ L TP + + Sbjct: 454 LTLDNEEAEIVVGKEVPFQTGSYTSTGTSSTPTNPFNTIERKNVGLSLKVTPQINEGDEV 513 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I E+S+ + +A D+ R+ T V + G IVL GLL + ++++ +P L Sbjct: 514 FLEINQEISDVIPKGDAVDV-QTSKRQIKTRVIVGDGNVIVLGGLLTEKETEVEKKVPGL 572 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 IP LGALFR++ RE+ + + P +V+ Sbjct: 573 GDIPGLGALFRSTSNEREKVNLMVFLRPVIVRD 605 >gi|121533454|ref|ZP_01665282.1| type II and III secretion system protein [Thermosinus carboxydivorans Nor1] gi|121308013|gb|EAX48927.1| type II and III secretion system protein [Thermosinus carboxydivorans Nor1] Length = 414 Score = 196 bits (499), Expect = 6e-48, Method: Composition-based stats. Identities = 73/307 (23%), Positives = 130/307 (42%), Gaps = 32/307 (10%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 ++ +L I D ++V+ ++++V G + ++A+ Sbjct: 134 ADEVKKSLALVIPDERLKVDEATNSLVFSGSPAESEALRQALA----------------- 176 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 L++ E QV+L+ + + R+ K +GF +G + + Sbjct: 177 -------ELDVPYE-QVSLEAQVVAINRNAAKDLGFDWQWSGLPANTEFDSTSGTTKTTR 228 Query: 240 SEGGDFSVK----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G G F+F+ L AL + + LA+P +T I+G+ A G + Sbjct: 229 EYPGVIKFGKAYDGTPYEFTFQAKLSALITSGEAKLLAKPKITTINGKEAKILIGDRIPV 288 Query: 296 KTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 + G T++ D G+ L +TP + + G I + TEVS P + V Sbjct: 289 LVERTENGKTTTTIEYIDAGIKLTYTPRINADGYITAAVHTEVSTPTL-VPEMKAYRVTT 347 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R+A T V + G T+V+ GL+ ++ K +PLLS +P+LG LF + + ETE+ I Sbjct: 348 REATTNVRMKDGDTMVIGGLISNEESGGKNRVPLLSDLPVLGKLFESVHKTKNETEVVIF 407 Query: 414 ATPFLVK 420 T +VK Sbjct: 408 LTARIVK 414 >gi|325275672|ref|ZP_08141565.1| type IV pilus secretin PilQ [Pseudomonas sp. TJI-51] gi|324099192|gb|EGB97145.1| type IV pilus secretin PilQ [Pseudomonas sp. TJI-51] Length = 418 Score = 196 bits (499), Expect = 6e-48, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 109/245 (44%), Gaps = 6/245 (2%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFV 239 ++++ L++ QV ++ I E D K +G + + G + P KS D G Sbjct: 174 RQLVAQLDVP-VRQVAIEARIVEANVDYEKALGVRWGSPLYGDNPLPGKSLFVDLG--VE 230 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G + + + L A+E++ +++P + ++A G + Y+ + Sbjct: 231 RAGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQE-T 289 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + +GATSV+ + + L TP + ++ + ++ EP ++P R + + Sbjct: 290 TKSGATSVSFREASLSLEVTPQITPDNKVIMAVRVTKDEPDYVNALNNVPPIRKNEVNAK 349 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + G TIV+ G+ + + +P L +P +G LFR +++E+ + TP ++ Sbjct: 350 VRVADGETIVIGGVYSTSQNNVVDKVPFLGDLPYVGRLFRRDALQEKKSELLVFLTPRIM 409 Query: 420 KPVAM 424 A+ Sbjct: 410 SDQAI 414 >gi|170719573|ref|YP_001747261.1| type IV pilus secretin PilQ [Pseudomonas putida W619] gi|169757576|gb|ACA70892.1| type IV pilus secretin PilQ [Pseudomonas putida W619] Length = 422 Score = 196 bits (499), Expect = 6e-48, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 102/243 (41%), Gaps = 2/243 (0%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++ L++ QV ++ I E D +G + S P+ Sbjct: 178 RQLVAQLDVP-VRQVEIEARIVEANVDYENSLGVRWGPRLYSEAPALGKDVFVDLGMERA 236 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + L A+E+ +++P + + ++A G + Y+ ++ Sbjct: 237 GSSIGFGVLRGGVLLDLELSAMEKTGNGEIISQPKVVTANNETARILKGTEVPYQE-TTK 295 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 +GATSVT + + L TP + G++ + ++ EP D+P R + + V Sbjct: 296 SGATSVTFREASLSLEVTPQITPDGKVIMTVKVTKDEPDFVNALNDVPPIRKNEVNAKVR 355 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G TIV+ G+ + + +P +P +G LFR +++E+ + TP ++ Sbjct: 356 VADGETIVIGGVYSTTQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIMND 415 Query: 422 VAM 424 A+ Sbjct: 416 QAI 418 >gi|289676481|ref|ZP_06497371.1| type II and III secretion system protein:NolW-like:NolW-like [Pseudomonas syringae pv. syringae FF5] Length = 701 Score = 196 bits (499), Expect = 6e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 117/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------ 226 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG Sbjct: 427 QTQERLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTY 485 Query: 227 ----------SKSFAADFGGKFVSEGGDFSVKGV-----LDRFSFETVLHALERATAIRT 271 + S FV G + G+ + + L A+E+ Sbjct: 486 GLDNNGDEAGNTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697 >gi|237798101|ref|ZP_04586562.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020953|gb|EGI01010.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 701 Score = 196 bits (499), Expect = 6e-48, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 114/273 (41%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + Q +++++ L+I QV ++ I E D KQ+G + + SG SK A Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGRTNLSGSSKWSAG 485 Query: 233 DFGGKFVSEGGDFSVKG---------------------VLDRFSFETVLHALERATAIRT 271 G + G V + + L A+E+ Sbjct: 486 GLDNNGDEAGNTGNNLGPNIPFVDLGAANATTGIGLGFVTNNTLLDLELSAMEKTGNGEI 545 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697 >gi|77361631|ref|YP_341206.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas haloplanktis TAC125] gi|76876542|emb|CAI87764.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Pseudoalteromonas haloplanktis TAC125] Length = 696 Score = 196 bits (499), Expect = 6e-48, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 24/261 (9%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---------- 229 S ++++ L+I QV ++ + VR ++ + +G + + S Sbjct: 435 SVRRMVETLDIP-VKQVVIEARMVTVRDNVTEDLGVRWGFSDQQGTDGISGTLEGAENIS 493 Query: 230 ----------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + S + + + + L ALE +A P +TA Sbjct: 494 NGNIPSLSDRLNVNLPVANPSASIGMHIAKLANGTLIDLELTALEEENKGEIIASPRITA 553 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + Q A G + Y S+S+GAT+V+ + L TP + ++ L + Sbjct: 554 ANQQKARIEQGTEIPYVE-SASSGATTVSFKKAVLSLEVTPHITPDNKVILNLIITQDTR 612 Query: 340 VIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 V G P+ ++ +T V + +G T+VL G+ + I + +PLL IP +G L Sbjct: 613 GDTVQTGTGPAVAIDTQQIETQVLVENGQTVVLGGIFQQQIINSTKKVPLLGDIPYIGRL 672 Query: 398 FRNSRFNREETEIFIAATPFL 418 F+++ E+ E+ I TP + Sbjct: 673 FKSTSEFNEKRELLIFVTPKI 693 >gi|82545746|ref|YP_409693.1| outer membrane porin HofQ [Shigella boydii Sb227] gi|81247157|gb|ABB67865.1| putative transport portein [Shigella boydii Sb227] Length = 412 Score = 196 bits (499), Expect = 6e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|119943890|ref|YP_941570.1| general secretion pathway protein D [Psychromonas ingrahamii 37] gi|119862494|gb|ABM01971.1| general secretion pathway protein D [Psychromonas ingrahamii 37] Length = 662 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 16/257 (6%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------SSGPSKS 229 SS ++ L+I QV ++ I EV + Q T ++G + Sbjct: 340 SSLTSIIRQLDIR-RAQVLVEAIIVEVSEGDGINLNVQWGTTNGGTQFQDSAVTTGNIVA 398 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 D + G ++ VL AL AT LA P+LT + Q ASF Sbjct: 399 GTQDNDAAISAIGNISGGIAGYIGSNWGVVLQALSSATTSNILATPSLTTLDNQEASFIV 458 Query: 290 GGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 G + T S+S+ ++ + G+ L TP + + + I+ EVS+ + Sbjct: 459 GDEVPVLTGSTSSATNDNPFQTIERKEIGIKLKVTPQINEGDSVQMIIEQEVSDIKNDTS 518 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 A D+ + R TTV SG TIV+ GL+ + +++ + +PLL IP+LG LFR+++ + Sbjct: 519 AVDV-IFSTRSVKTTVLAKSGETIVIGGLIDETVKETVQKVPLLGDIPLLGFLFRSTQSS 577 Query: 405 REETEIFIAATPFLVKP 421 E+ + I +++ Sbjct: 578 TEKRNLMIFLRATIIRD 594 >gi|330971735|gb|EGH71801.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 701 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG K Sbjct: 427 QTQERLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTY 485 Query: 231 --------AADFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRT 271 A + G S + V + + L A+E+ Sbjct: 486 GLDNNGDEAGNTGSSVTSNVPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEI 545 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697 >gi|330977147|gb|EGH77105.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 701 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 117/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------ 226 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG Sbjct: 427 QTQERLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTY 485 Query: 227 ----------SKSFAADFGGKFVSEGGDFSVKGV-----LDRFSFETVLHALERATAIRT 271 + S FV G + G+ + + L A+E+ Sbjct: 486 GLDNNGDEAGNTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEI 545 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697 >gi|319789871|ref|YP_004151504.1| general secretion pathway protein D [Thermovibrio ammonificans HB-1] gi|317114373|gb|ADU96863.1| general secretion pathway protein D [Thermovibrio ammonificans HB-1] Length = 638 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 63/259 (24%), Positives = 109/259 (42%), Gaps = 17/259 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K V+ +++ QV ++V I E+ D L Q+G + S G F G + Sbjct: 335 KDVVKSIDVKRP-QVFVEVQIVEMSMDKLLQMGVEWKFL--SRGNYVPFGGSLYGNLPLQ 391 Query: 242 GGDFSVKGVL---------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G S L +L+A + + +A P + + + A Sbjct: 392 PGYPSASPGLLLGIAKWRDGVPDIGLLLNAYAKEGGVNVIATPQILTLDNEEAEINISKV 451 Query: 293 HLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-D 347 Y T +++ S D G+VL TP + + G + L++ +V + V NA Sbjct: 452 IPYSTGVKYDTNNNPVISYDYKDVGIVLKITPHITASGEVRLKVYEKVEDVVGYANADQT 511 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P R+A TTV++ G T+V+ GL+K E +P+L IP++G LF+ + E+ Sbjct: 512 APITSKREAKTTVDVHDGQTLVIGGLIKRKKLTTVEKVPVLGSIPVIGNLFKKTGHQIEK 571 Query: 408 TEIFIAATPFLVKPVAMRD 426 T + + TP +V+ Sbjct: 572 TNLLVFITPHIVRNTEEEQ 590 >gi|229220650|ref|YP_052181.2| putative outer membrane porin HofQ [Pectobacterium atrosepticum SCRI1043] Length = 383 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 6/231 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + + L+ +G + + +F + + L R Sbjct: 149 QVQLAAHIVTISSEHLQALGVNWGLGEGDAANKALRLNNFNVGLPVDMPAINAGFHLARL 208 Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + + L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + Sbjct: 209 NGRLLDLELMALEQESEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 268 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTI 368 + + TP +L GRI L ++ + P + GD + ++ T V + G TI Sbjct: 269 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 328 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + +P+LS+IP+ G LFRN E+ I TP L+ Sbjct: 329 VLGGIFQQQKKNSDRQVPILSEIPVFGHLFRNHTQQHTRRELVIFITPTLI 379 >gi|49613540|emb|CAG76991.1| putative type II secretion system protein [Pectobacterium atrosepticum SCRI1043] Length = 393 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 6/231 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + + L+ +G + + +F + + L R Sbjct: 159 QVQLAAHIVTISSEHLQALGVNWGLGEGDAANKALRLNNFNVGLPVDMPAINAGFHLARL 218 Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + + L ALE+ + + +A P L Q+AS G + Y+ S ++G+TS+ + Sbjct: 219 NGRLLDLELMALEQESEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 278 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTI 368 + + TP +L GRI L ++ + P + GD + ++ T V + G TI Sbjct: 279 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 338 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + + +P+LS+IP+ G LFRN E+ I TP L+ Sbjct: 339 VLGGIFQQQKKNSDRQVPILSEIPVFGHLFRNHTQQHTRRELVIFITPTLI 389 >gi|70733953|ref|YP_257593.1| type IV pilus biogenesis protein PilQ [Pseudomonas fluorescens Pf-5] gi|68348252|gb|AAY95858.1| type IV pilus biogenesis protein PilQ [Pseudomonas fluorescens Pf-5] Length = 583 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 68/329 (20%), Positives = 133/329 (40%), Gaps = 29/329 (8%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D+A L L + + + +V + S E + + + + ++Q Sbjct: 257 DLAPLRRELLQVNYAKAADIAKLFQSVTRAEEKADERGSITVDERTNSII--AYQSQERL 314 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------------- 217 ++++ L++ QV ++ I E D K +G + Sbjct: 315 DELRRIVAQLDVP-VRQVMIEARIVEANVDYDKSLGVRWGGSVQNQGNWSASGVQNAASG 373 Query: 218 --SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 SI SG S S D G + G + + D + L A+E+ +++P Sbjct: 374 SSSIGAPGSGGSNSPFVDLGASAHTSG--IGIAYITDNVLLDLELTAMEKTGNGEIVSQP 431 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + ++A G + Y+ SSS GATSV+ + + L TP + RI + ++ Sbjct: 432 KVVTSDKETAKILKGTEIPYQEASSS-GATSVSFKEASLSLEVTPQITPDNRIIMEVKVT 490 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 EP D+P + + + V + G TIV+ G+ + ++ + +P L +P LG Sbjct: 491 KDEPDYLNKVQDVPPIKKNEVNAKVLVNDGATIVIGGVFSNTQSKVVDKVPFLGDVPYLG 550 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424 LFR + +++E+ + TP ++ A+ Sbjct: 551 RLFRRDVVSEKKSELLVFLTPRIMNNQAI 579 >gi|30065325|ref|NP_839496.1| outer membrane porin HofQ [Shigella flexneri 2a str. 2457T] gi|56480325|ref|NP_709164.2| outer membrane porin HofQ [Shigella flexneri 2a str. 301] gi|30043587|gb|AAP19307.1| putative transport portein [Shigella flexneri 2a str. 2457T] gi|56383876|gb|AAN44871.2| putative transport portein [Shigella flexneri 2a str. 301] gi|281602739|gb|ADA75723.1| putative transport protein [Shigella flexneri 2002017] gi|313647313|gb|EFS11765.1| transport protein hofQ [Shigella flexneri 2a str. 2457T] gi|332749511|gb|EGJ79928.1| transport protein hofQ [Shigella flexneri K-671] Length = 412 Score = 196 bits (498), Expect = 8e-48, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 ESEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|332090365|gb|EGI95463.1| transport protein hofQ [Shigella boydii 3594-74] Length = 385 Score = 196 bits (498), Expect = 8e-48, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 133 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 191 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 192 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 250 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 251 GSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 310 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 311 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYER 370 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 371 RELVVFITPRLV 382 >gi|218691667|ref|YP_002399879.1| outer membrane porin HofQ [Escherichia coli ED1a] gi|218429231|emb|CAR10041.1| fimbrial transporter [Escherichia coli ED1a] Length = 412 Score = 196 bits (498), Expect = 8e-48, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N+ A S+ ++ ++ +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSTLEQWVSQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHIGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LF + E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFHHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|28870471|ref|NP_793090.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato str. DC3000] gi|28853718|gb|AAO56785.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato str. DC3000] Length = 763 Score = 196 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 108/262 (41%), Gaps = 19/262 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ I EV+ +G Q + +SG + + G + G ++ Sbjct: 489 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 548 Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + + L ALE + L+ P+L ++ Q A G S +T Sbjct: 549 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 608 Query: 305 ------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRK 355 +SV GV+L P + G + + IQ +VS+ G + D+ P R Sbjct: 609 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 668 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V SG T++L GL+K D + +P L +IP L LF NS +++ TE+ + T Sbjct: 669 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 728 Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437 P ++ + + D Y + Sbjct: 729 PRVI--TSSSQARQVTDDYRQQ 748 >gi|94959236|gb|ABF47508.1| GspD [Leptospira biflexa serovar Patoc] Length = 595 Score = 196 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 120/317 (37%), Gaps = 23/317 (7%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 V QD +AV E+ KK++ +L+ QV L+V I E+ Sbjct: 279 KVPGKQDKIKAVAHKESNSLIVTATPQEWEEIKKIIKILDTP-RKQVLLEVLIVELSSTD 337 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------RFSFETVL 260 L G + G + A GG G +V + +L Sbjct: 338 LNDFGIDWRYQELAYGQFNTGLAAQGGVIDKNGRPTNVNTLSGFSLGFIRRGGQQIIGIL 397 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------ATSVTTHDY 312 +A L+ P + + Q A G +T + + G + Sbjct: 398 NANSTNENFNVLSAPQILTLDNQEAEINVGQDVPVRTQNRNAGLGGDNAVTVANFEYRPT 457 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 G+ L FTP + RI L + E+ + G P++ R TT+ + + TIV+ Sbjct: 458 GIKLKFTPHINKNNRITLDLYQEIKNVAGISSEATGGNPTFNKRDIKTTIVVDNIQTIVI 517 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD---L 427 GLL +D Q+ + IP+L +IP+LG LFR + +T + + TP ++ D + Sbjct: 518 GGLLSNDKQKKVQKIPILGEIPLLGTLFRRTTNQNRKTNLMVFLTPHILDDRDKSDRMTI 577 Query: 428 SRPDDHYSVEDDAKAFF 444 + ++ + D+ + Sbjct: 578 QKKNEQERMVDEREKKL 594 >gi|315633544|ref|ZP_07888834.1| type IV pilus secretin PilQ [Aggregatibacter segnis ATCC 33393] gi|315477586|gb|EFU68328.1| type IV pilus secretin PilQ [Aggregatibacter segnis ATCC 33393] Length = 474 Score = 196 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 124/318 (38%), Gaps = 23/318 (7%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + T++ A ++ ++ ++ G + + S + S L Q AN Sbjct: 126 TSLATATIKLHFAKASEVMKSLTGG---SGSMLSPNGSITFDDRSNLLLIQDEPKSIAN- 181 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------------- 226 KK++ L+ E Q+ ++ I + + LK +G + I + Sbjct: 182 -LKKLIKELDKPIE-QIAIEARIVTINAESLKDLGVRWGIFNPTENAHKIAGSLAANGFD 239 Query: 227 --SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + + G ++ + L ALER + +A P L + +S Sbjct: 240 NIANQLNVNLPTATTPAGSIALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKS 299 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IG 342 AS G + Y V+ +G SV + + L TP + +I L + + P + Sbjct: 300 ASIKQGTELPYIMVNEKSGTQSVEFREAVLGLEVTPHISLDKQILLDLIVSQNAPGSRVA 359 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G++ S ++ +T V G TIVL G+ D I + + +PLL IP + LF Sbjct: 360 YGLGEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKSLDKVPLLGDIPGIKHLFSKES 419 Query: 403 FNREETEIFIAATPFLVK 420 ++ E+ I TP +++ Sbjct: 420 DRHQKRELVIFVTPHILR 437 >gi|119470430|ref|ZP_01613158.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonadales bacterium TW-7] gi|119446355|gb|EAW27631.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonadales bacterium TW-7] Length = 697 Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 105/259 (40%), Gaps = 24/259 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ + VR ++ + +G + + S Sbjct: 438 RRMIETLDIP-VQQVVIESRMVTVRDNVTEDLGVRWGFSDQQGSDGISGSLEGAETISNG 496 Query: 230 --------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + + + + + L ALE +A P + A + Sbjct: 497 VIPDLTDRLNVNLPITNPAASIGLHIAKLANGTLIDLELSALEEENKGEIIASPRIIAAN 556 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEP 339 Q A G + Y T S+S+GAT+V+ + L TP + ++ L I + Sbjct: 557 QQKARIEQGTEIPY-TESASSGATTVSFKKAVLSLEVTPHITPDNKVILDLIITQDTRGD 615 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V+ G+ S ++ T V + +G TIVL G+ + I +P+L IP +G LF+ Sbjct: 616 VVQTGTGEAVSIDTQEIQTQVLVENGQTIVLGGIFQQQIINTTNKVPVLGDIPYVGRLFK 675 Query: 400 NSRFNREETEIFIAATPFL 418 ++ E+ E+ I TP + Sbjct: 676 STSEFNEKRELLIFVTPKI 694 >gi|116328309|ref|YP_798029.1| Type II secretory pathway component, protein D [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331035|ref|YP_800753.1| Type II secretory pathway component, protein D [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121053|gb|ABJ79096.1| Type II secretory pathway component, protein D [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124724|gb|ABJ75995.1| Type II secretory pathway component, protein D [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 598 Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 134/379 (35%), Gaps = 53/379 (13%) Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-------------SNIRVEMVS 142 N I++ G + L +L I L++ L + E ++ Sbjct: 190 NTNTIVLSGSGADINKLLVL----INELDLKLEEASPGAIASAGDVHIYTLEHSEAEKIA 245 Query: 143 DTVV-----------------LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 T+V + G + + +AV E+ + +K++ Sbjct: 246 ATLVKLDNPVVQSEELSPEKKVPGQIPMKVEKIKAVGHKESNSVIVTATNAEWAEIRKII 305 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 +L+ A QV L+V I E+ L G G + G S + S G Sbjct: 306 KVLDSA-RKQVLLEVLIVELTSSDLNDFGIDWRYKGEAFGQFNSGLSKEANIINSNGQIN 364 Query: 246 SVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 L FS +L A + L+ P + + Q A + G Sbjct: 365 PNVNTLSGFSLGFLKAGSEQIIGILSANQGNENFNVLSAPQVLTVDNQEAEISVGQDVPV 424 Query: 296 KTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 +T S + G G+ L FTP V RI L + E+ AG Sbjct: 425 RTQSRNAGTGGTNAVTVDNYEYRPTGIKLKFTPHVNKNNRITLELFQEIKNIAEIALAGG 484 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P++ R+ T++ + + +IV+ GL+ +D Q+ IP L IP LG LF+ + ++ Sbjct: 485 NPTFNRREIKTSISIENTQSIVIGGLISNDKQKRIIKIPFLGDIPYLGHLFKRTTEKIKK 544 Query: 408 TEIFIAATPFLVKPVAMRD 426 T + + TP ++ D Sbjct: 545 TNLMVFITPHILDSRENAD 563 >gi|238927984|ref|ZP_04659744.1| Fimbrial type IV assembly protein pilQ precursor [Selenomonas flueggei ATCC 43531] gi|238883944|gb|EEQ47582.1| Fimbrial type IV assembly protein pilQ precursor [Selenomonas flueggei ATCC 43531] Length = 428 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 21/334 (6%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR--VEMVSDTVVLHGMVRTIQDSQRAV 161 +++ + D L + R V + + G + + V Sbjct: 98 DAQRRVHTYTVR-YADPEELAHAANLSLTGEGKRAIVSKPNKDIGESGDQSSDVQRRVLV 156 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + + L G A + +++++ L+ A QV+L+ + V + K++G S + Sbjct: 157 DTATNTLLFYGTESEAF-AVREIVSALDTA-PRQVSLEARVVAVSKRAAKELGVDWSWSS 214 Query: 222 ---------SSSGPSKSFAADFGGKFVSEGGDFSVK----GVLDRFSFETVLHALERATA 268 S+G + G S G G+ F + + AL Sbjct: 215 LPQYPNVTRDSAGNWHVSGRNAGTAGRSAPGVIRFGRGPEGLPYEFYYSAAIRALITEGK 274 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPG 326 + LA P +T + G+ A G + V++S T + + G++L +TP V + G Sbjct: 275 AKMLARPNVTTVQGREALINIGAEVPVPVVTTSNNVTTTGIEYREAGIILRYTPRVTADG 334 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I + TEVS PV V+ ++ R ADTTV L +G T+V+ GL+ D + IP Sbjct: 335 NIVAHVHTEVSTPVF-VDDLKAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRTLAKIP 393 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L +P+LGA FR R ++ E+E+ I T ++ Sbjct: 394 FLGDLPLLGAFFRTVRTSKNESELMIFLTAHVLD 427 >gi|320186741|gb|EFW61464.1| Type IV pilus biogenesis protein PilQ [Shigella flexneri CDC 796-83] Length = 386 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 GSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|85711968|ref|ZP_01043022.1| possible Flp pilus assembly protein CpaC [Idiomarina baltica OS145] gi|85694154|gb|EAQ32098.1| possible Flp pilus assembly protein CpaC [Idiomarina baltica OS145] Length = 393 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 92/408 (22%), Positives = 164/408 (40%), Gaps = 38/408 (9%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + + +++ + + +L + V+++D A + S T+ + G G + Sbjct: 14 VQTSNAVTTENLTLTVGQSELLTI-TPSTQVMIADEALAQAKLISQDTLLVRGLLPGTTD 72 Query: 99 VILIGHDGKQMLNLDI-LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 + LIG + K+++ + + + I T R + V + L G + Sbjct: 73 MWLIGPNDKRVVITIVHAVPKTIVTRLKTWARDYPNF--NVHEEGQHIELSGSLP----- 125 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 E + Y N + V ++ + LKVTI E+++ ++Q+G Q Sbjct: 126 -----ALERTALKKLIEPYPNIIDRTVSTRVD---HPMLRLKVTILEIKQQFVQQLGIQW 177 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 GP+ + GV + + LE+ A + LA P L Sbjct: 178 --DSQIDGPNWQWGRQ--------------GGVQWSPLLMSNIQLLEQQGAAKLLATPVL 221 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 T SGQ ASF +GG+ V G V+ +YGV L PTV + +I ++ EVS Sbjct: 222 TTQSGQPASFLAGGEIPIPQVVGQ-GMQDVSFREYGVRLTIEPTVSAESKITAKLSAEVS 280 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 V +P R+ + + G T+VL+GLL D + + G+P L ++PI G + Sbjct: 281 NIDPAVEVNGVPGILTRRTEAVLSSRHGETVVLSGLLSTDSSESEAGLPGLKQLPIAGEV 340 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 F++ + TE+ I T +V D R + AK ++ Sbjct: 341 FKHRGQRNQHTELLIFVTSEIV----AYDQQRHQLKQRHQQQAKEWYL 384 >gi|294142779|ref|YP_003558757.1| type IV pilus biogenesis protein PilQ [Shewanella violacea DSS12] gi|293329248|dbj|BAJ03979.1| type IV pilus biogenesis protein PilQ [Shewanella violacea DSS12] Length = 643 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 105/259 (40%), Gaps = 24/259 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229 +++ +L+I QV ++ + V+ ++ + +G Q IT S Sbjct: 383 RLIEVLDIPI-RQVLIEARMVTVKDNVSEDLGIQWGITDQQGTRGTSGSIEGAESIAGGL 441 Query: 230 -------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + F V + D + L ALE+ +A P + + Sbjct: 442 IPALADRLNVALPAPAGAASIAFHVARLADGTILDMELSALEQENKGEIIASPRIMTSNQ 501 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340 ++A G Q Y SSS+GA +V+ + L TP + R+ L ++ V Sbjct: 502 KAAYIEQGVQIPYVE-SSSSGAATVSFKKAVLSLRVTPQITPDNRVILDLEITQDSQGEV 560 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G+ S ++ T V + G TIVL G+ + ++ +P+L IP LG LFR+ Sbjct: 561 VATPLGEAVSIDTQRIGTQVLVNHGETIVLGGIYQQNLISRVSKVPILGDIPFLGFLFRS 620 Query: 401 SRFNREETEIFIAATPFLV 419 + E E+ I TP ++ Sbjct: 621 TSDKNERQELLIFVTPKII 639 >gi|238899270|ref|YP_002924953.1| putative transport protein, possibly in biosynthesis of type IV pilin [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467031|gb|ACQ68805.1| putative transport protein, possibly in biosynthesis of type IV pilin [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 419 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 7/232 (3%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 Q+ L I + + L ++G + + G K+F + K + +F V + Sbjct: 190 RQIELSAHIVTMSSENLYELGIRWGMNALEKGNPLGIKNFNINLPLKNTAIAANFQVASI 249 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + L ALE+ + +A P L Q+AS G Y+ ++ S+ Sbjct: 250 NSRL-LDLELSALEQENQVDIIASPRLITSHQQTASIKQGTDIPYQ-INGKKENVSIEFK 307 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368 + + + TPT+L +I L+++ + P + + G+ + ++ T + + G TI Sbjct: 308 EAVLGMEVTPTILGNDKIRLKLKISQNMPGMAIKRGNAETLAIDKQEITTQIIVKHGETI 367 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 VL G+ + + +P IP LGALFR + E+ I TP L+ Sbjct: 368 VLGGIFQKKNNHRIDKVPGFGNIPFLGALFRQDVNQQRRRELVIFITPKLIH 419 >gi|183221062|ref|YP_001839058.1| general secretory pathway protein D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911156|ref|YP_001962711.1| type II secretory pathway protein D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775832|gb|ABZ94133.1| Type II secretory pathway component, protein D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779484|gb|ABZ97782.1| General secretory pathway protein D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 587 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 120/317 (37%), Gaps = 23/317 (7%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 V QD +AV E+ KK++ +L+ QV L+V I E+ Sbjct: 271 KVPGKQDKIKAVAHKESNSLIVTATPQEWEEIKKIIKILDTP-RKQVLLEVLIVELSSTD 329 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------RFSFETVL 260 L G + G + A GG G +V + +L Sbjct: 330 LNDFGIDWRYQELAYGQFNTGLAAQGGVIDKNGRPTNVNTLSGFSLGFIRRGGQQIIGIL 389 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------ATSVTTHDY 312 +A L+ P + + Q A G +T + + G + Sbjct: 390 NANSTNENFNVLSAPQILTLDNQEAEINVGQDVPVRTQNRNAGLGGDNAVTVANFEYRPT 449 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 G+ L FTP + RI L + E+ + G P++ R TT+ + + TIV+ Sbjct: 450 GIKLKFTPHINKNNRITLDLYQEIKNVAGISSEATGGNPTFNKRDIKTTIVVDNIQTIVI 509 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD---L 427 GLL +D Q+ + IP+L +IP+LG LFR + +T + + TP ++ D + Sbjct: 510 GGLLSNDKQKKVQKIPILGEIPLLGTLFRRTTNQNRKTNLMVFLTPHILDDRDKSDRMTI 569 Query: 428 SRPDDHYSVEDDAKAFF 444 + ++ + D+ + Sbjct: 570 QKKNEQERMVDEREKKL 586 >gi|28872241|ref|NP_794860.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato str. DC3000] gi|213969446|ref|ZP_03397583.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato T1] gi|28855495|gb|AAO58555.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato str. DC3000] gi|213925817|gb|EEB59375.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato T1] Length = 718 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 57/273 (20%), Positives = 117/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------- 224 + Q +++++ L+I QV ++ I E D KQ+G + + ++S Sbjct: 444 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSRNGKWTTY 502 Query: 225 --------GPSKSFAADFGGKFVSEGGDFSVKGV-----LDRFSFETVLHALERATAIRT 271 G + + FV G + G+ + + L A+E+ Sbjct: 503 GLDDNGDEGGNTNANLTSNIPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEI 562 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 563 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 621 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 622 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 681 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 682 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 714 >gi|167036119|ref|YP_001671350.1| type IV pilus secretin PilQ [Pseudomonas putida GB-1] gi|166862607|gb|ABZ01015.1| type IV pilus secretin PilQ [Pseudomonas putida GB-1] Length = 420 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 107/245 (43%), Gaps = 6/245 (2%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFV 239 ++++ L++ QV ++ I E D K +G + + G+ P K D G Sbjct: 176 RQLVTQLDVP-VRQVAIEARIVEANVDYEKSLGVRWGGPLYGAQLRPGKELFVDLG--VE 232 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 GG + + + L A+E++ +++P + ++A G + Y+ S Sbjct: 233 RAGGSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETS 292 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 S GATSV+ + + L TP + ++ + ++ EP ++P R + + Sbjct: 293 QS-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEVNAK 351 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + G TIV+ G+ + + +P +P +G LFR +++E+ + TP ++ Sbjct: 352 VRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIM 411 Query: 420 KPVAM 424 A+ Sbjct: 412 SDQAI 416 >gi|213970091|ref|ZP_03398223.1| type II and III secretion system protein [Pseudomonas syringae pv. tomato T1] gi|301381448|ref|ZP_07229866.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato Max13] gi|302061436|ref|ZP_07252977.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato K40] gi|302133002|ref|ZP_07258992.1| general secretion pathway protein D [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925195|gb|EEB58758.1| type II and III secretion system protein [Pseudomonas syringae pv. tomato T1] Length = 775 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 108/262 (41%), Gaps = 19/262 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ I EV+ +G Q + +SG + + G + G ++ Sbjct: 501 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 560 Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + + L ALE + L+ P+L ++ Q A G S +T Sbjct: 561 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 620 Query: 305 ------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRK 355 +SV GV+L P + G + + IQ +VS+ G + D+ P R Sbjct: 621 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 680 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V SG T++L GL+K D + +P L +IP L LF NS +++ TE+ + T Sbjct: 681 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 740 Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437 P ++ + + D Y + Sbjct: 741 PRVI--TSSSQARQVTDDYRQQ 760 >gi|332750832|gb|EGJ81239.1| transport protein hofQ [Shigella flexneri 2747-71] gi|332763627|gb|EGJ93866.1| protein involved in utilization of DNA as a carbon source [Shigella flexneri 2930-71] gi|332997370|gb|EGK16986.1| transport protein hofQ [Shigella flexneri K-218] gi|333012492|gb|EGK31873.1| transport protein hofQ [Shigella flexneri K-304] Length = 386 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 134 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 192 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 193 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 251 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 252 ESEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 311 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 312 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 371 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 372 RELVVFITPRLV 383 >gi|83749638|ref|ZP_00946621.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551] gi|83723699|gb|EAP70894.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551] Length = 401 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 157/335 (46%), Gaps = 33/335 (9%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81 S A +E+ A N + + + ++++ + K ++Q+P V++ V +P ++ Sbjct: 73 SAATAEASRESAAKGPNCT-GAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAML 131 Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEM 140 SP+T+YL G+ VG N+I+ G G + +D+ + D L+ TLR + + N++V Sbjct: 132 VSPQTLYLLGQEVGTTNMIVQGRSGSCSV-IDVSVGADPGGLQSTLRTLMPGAKNVQVSA 190 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYAN 178 +D++VL G V +Q+ ++++ F+ G A Sbjct: 191 AADSLVLGGSVSDSVQAQKVLDIANAFVMHQTRGPAQGDQGGAAQGGGAMQGLGATPGAP 250 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S +++N++ + QV L+V +AEV + ++ Q+G ++ G S+ F Sbjct: 251 PRSPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNVN----GAFGSWTFGALANF 306 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 +S D + + L A + ++ LAEP+L AISGQ ASF +GG+ Sbjct: 307 LSGSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVS 366 Query: 299 SS--STGATSVTTHD--YGVVLHFTPTVLSPGRIG 329 + G ++ + +GV L FTPTV+ GRI Sbjct: 367 QGAATNGVANIILXEETFGVGLRFTPTVMEKGRIT 401 >gi|251788920|ref|YP_003003641.1| general secretion pathway protein D [Dickeya zeae Ech1591] gi|247537541|gb|ACT06162.1| general secretion pathway protein D [Dickeya zeae Ech1591] Length = 716 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 72/365 (19%), Positives = 135/365 (36%), Gaps = 46/365 (12%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 T+V+ G T++ + L T R+ ++V+N L+I QV + Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 402 Query: 199 KVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFA--------------ADFGGKF 238 + IAE++ +G Q + I +S S + + Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMIQFPNSNASNNIPISTAMIGTDQFRSDGTLTTAY 462 Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + G F+ + R ++ +L AL LA P++ + A+F G + T Sbjct: 463 ANALGSFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLT 522 Query: 298 VSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDM 348 +T +V G+ L P + + L+I+ EVS G N+ Sbjct: 523 GQQTTMGSGSNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNSSTNSSLG 582 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ R + V + +G T+V+ GLL + +PLL IP LG+LFR+ + + Sbjct: 583 VTFNTRTVNNAVMVTNGETVVVGGLLDKSTIETNNKVPLLGDIPWLGSLFRSKSQSMSKR 642 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 + + P +++ Y +K FN + + S ++ + + Sbjct: 643 NLMLFLRPTIIRDP---------QQYQQASISKYNSFNNEQQQQRGQGNSVLDNNTLRLS 693 Query: 469 IGFIY 473 G Y Sbjct: 694 GGNTY 698 >gi|309703802|emb|CBJ03143.1| protein transport protein [Escherichia coli ETEC H10407] Length = 412 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ + L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP+ G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFNTPRLV 409 >gi|91200092|emb|CAJ73135.1| similar to general secretion pathway protein D [Candidatus Kuenenia stuttgartiensis] Length = 668 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 69/281 (24%), Positives = 120/281 (42%), Gaps = 11/281 (3%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 R I +S + + +ET S K ++ ++ A QV ++V I EV R+ Sbjct: 374 RDIVESMKVLADTETNSVIMKTFPSDYKSIKAIIEAID-ATPQQVFIEVLIVEVTRNDTL 432 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 G + +G S D + F+ + SFE ++ L ++ + Sbjct: 433 DYGTEWLWSG--SNLQVYGVGDIARAAGNAAVQFT--NTFAKGSFEILIDILATSSNAKI 488 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFTPTVLSPG 326 L+ P + Q AS G + T S T++T D G++L TP + G Sbjct: 489 LSAPHILVRDEQPASIQVGEEVPILTSSGQQTGTTITFEQVQYRDTGIILTVTPHIAENG 548 Query: 327 RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + EVS + + P++ R+ T++ + SG TI L G+++ ++ + I Sbjct: 549 LITLEVNQEVSNAKLTDTGVEKSPTFSTRQVQTSLVIKSGHTIGLGGIIEQKNEKEVKKI 608 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 PLL IP LG LF+ + + TE+ + TP++ D Sbjct: 609 PLLGDIPYLGNLFKATSLIDKRTELIMLITPYIANNAEDAD 649 >gi|330981434|gb|EGH79537.1| general secretion pathway protein D [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 589 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 103/262 (39%), Gaps = 19/262 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ I EV+ +G Q + +SG + + G + G ++ Sbjct: 315 PLQVQIETRILEVQLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 374 Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + + L ALE + L+ P+L ++ Q A G S +T Sbjct: 375 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 434 Query: 305 T------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRK 355 SV GV+L P + G + + IQ +VS N A P R Sbjct: 435 NAGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNANNSDANGNPRISTRS 494 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V SG T++L GL+K D + +P L +IP L LF N+ ++ TE+ + T Sbjct: 495 VATQVAAQSGQTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLIT 554 Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437 P ++ + + D Y + Sbjct: 555 PRVI--TSSSQARQVTDDYRQQ 574 >gi|167625988|ref|YP_001676282.1| type IV pilus secretin PilQ [Shewanella halifaxensis HAW-EB4] gi|167356010|gb|ABZ78623.1| type IV pilus secretin PilQ [Shewanella halifaxensis HAW-EB4] Length = 688 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 72/298 (24%), Positives = 125/298 (41%), Gaps = 26/298 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204 +L G ++ ++ +V + E + ++ + +++ +L+I + QV ++ + Sbjct: 389 LLKGEDSSLLTARGSVAVDERTNTLLVKDTEETLENVHRLIEVLDIPIK-QVLIEARMVT 447 Query: 205 VRRDILKQIGFQHSITGSSS--GPSKSF--AADFGGKFVSEGGD---------------- 244 V+ D+ + +G + +T G S S A D V D Sbjct: 448 VKDDVSEDLGVRWGVTDQQGDKGTSGSLEGAGDIANGIVPSLSDRLNVNLPAAVANPTSI 507 Query: 245 -FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F V + D + L ALE+ +A P +T + ++A G + Y SSS G Sbjct: 508 AFHVAKLADGTVLDLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVEASSS-G 566 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVE 361 AT+VT + L TP + R+ L ++ V+ G S ++ T V Sbjct: 567 ATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGQAVSIDTQRIGTQVL 626 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G TIVL G+ + + +P+L IP LG +FRNS E E+ I TP +V Sbjct: 627 VDHGETIVLGGIYQQQLITKVSKVPILGDIPYLGFMFRNSSDKNERQELLIFVTPKIV 684 >gi|127511146|ref|YP_001092343.1| type IV pilus secretin PilQ [Shewanella loihica PV-4] gi|126636441|gb|ABO22084.1| type IV pilus secretin PilQ [Shewanella loihica PV-4] Length = 683 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 66/260 (25%), Positives = 111/260 (42%), Gaps = 25/260 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--GPSKSF--AADFGGKF 238 +++ +L+I QV ++ + V+ D+ + +G + IT G S S A D Sbjct: 422 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIKWGITDQQGSKGTSGSLEGANDIANGV 480 Query: 239 VSEGGD-----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 V + GD F V + D + L ALE+ + +A P +T + Sbjct: 481 VPDIGDRLNVNLPAAVANPTSIAFHVAKLADGTLLDLELSALEQESKGEIIASPRITTSN 540 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y S+S+GA +V + L TP + R+ L ++ Sbjct: 541 QKAAYIEQGVEIPYVE-SASSGAATVQFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 599 Query: 342 GVNA--GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V+ G S ++ T V + G TIVL G+ + + +P+L IP LG LFR Sbjct: 600 TVDTPLGQAVSIDTQRIGTQVLVDHGETIVLGGIYQQQLINRVSKVPVLGDIPFLGYLFR 659 Query: 400 NSRFNREETEIFIAATPFLV 419 N+ E E+ I TP ++ Sbjct: 660 NTTDKNERQELLIFVTPKII 679 >gi|330969406|gb|EGH69472.1| type II and III secretion system protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 325 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 76/277 (27%), Positives = 123/277 (44%), Gaps = 20/277 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVS 240 QV + EV R LK+ GSS+ + Sbjct: 40 PSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPL 99 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 +F++ +++A+E + TLA P+L A++GQSASF +GG+ + Sbjct: 100 NNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNG 159 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKA 356 S+ ++GV L TPTV+ RI L++ EVSE I + +P+ +R+ Sbjct: 160 EGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRT 219 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT++ L G + V++GL+ + P L IPILGA FR+S+ R+E E+ + TP Sbjct: 220 DTSIALADGESFVISGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTP 279 Query: 417 FLVKPVA--MRDLSRPDDHYSV--EDDAKAFFFNRVN 449 LV+P+A R S P + + +F + Sbjct: 280 HLVQPLAANARLPSLPGEGLRTYDPSFPRLYFLENGD 316 >gi|153871180|ref|ZP_02000417.1| Bacterial type II and III secretion system protein [Beggiatoa sp. PS] gi|152072356|gb|EDN69585.1| Bacterial type II and III secretion system protein [Beggiatoa sp. PS] Length = 442 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 62/313 (19%), Positives = 114/313 (36%), Gaps = 35/313 (11%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G + + T + + V+ L+I QV ++ IAE+ D Sbjct: 93 GKSPSPEIKTNIQADESTNSLVITATPKVQQNLQTVIRQLDIR-RAQVLVEAVIAEISTD 151 Query: 209 ILKQIGFQHSITGS----------------------SSGPSKSFAADFGGKFVSEGGDFS 246 +++G Q + G+ S+G + + + G Sbjct: 152 TARELGVQWLLYGNKGTAPFGLSNFDNSGTRIADLASAGYLANNNSSTSLPNIGAGAFLG 211 Query: 247 VKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA- 304 + + F +F +L AL T L+ P+L + Q A G + T + Sbjct: 212 LGRFNNSFLNFGVLLRALASDTNTNVLSTPSLLTLDNQEAEIVVGQNVPFVTGQYTNTGT 271 Query: 305 ----------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++ D G+ L P + + L I+ EVS A R Sbjct: 272 SGGGGVTNPFQTIQREDIGIKLRVKPQINEGNAVKLEIEQEVSSLSRSSQATTDIVTNKR 331 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 TTV + G +VL GL+ +D+QQ + +P L +PI+G LFR+ + + + + Sbjct: 332 TIKTTVIVEDGNMVVLGGLIDEDLQQTAQKVPGLGDLPIIGHLFRSRSTQKIKRNLMVFL 391 Query: 415 TPFLVKPVAMRDL 427 P +++ A ++ Sbjct: 392 HPVIIRDAASENI 404 >gi|157372838|ref|YP_001480827.1| putative outer membrane porin HofQ [Serratia proteamaculans 568] gi|157324602|gb|ABV43699.1| type IV pilus secretin PilQ [Serratia proteamaculans 568] Length = 413 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 108/232 (46%), Gaps = 7/232 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----SFAADFGGKFVSEGGDFSVKGV 250 QV L I + + L+++G + + S F + + F + + Sbjct: 182 QVQLATHIVTINSESLRELGVRWGLAPDDRPASSWQMDGFNVGLPLERSAVSAGFHLARI 241 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + L ALE+ + +A P L + Q+AS G + Y+ S S+GATS+ Sbjct: 242 GGRL-LDLELMALEQENRVEIIASPRLLTANLQTASIKQGTEIPYEVNSGSSGATSMEFK 300 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTI 368 + + + TP +L GRI L +Q + P ++ AG+ + ++ T V + G T+ Sbjct: 301 EAVLGMEVTPKILPNGRITLTLQISQNMPGRSISRAAGETLAIDKQEIKTQVTVKDGETV 360 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 VL G+ + + + +P +S +P+LG+LF+ S + E+ I TP L+K Sbjct: 361 VLGGVFQRHSAEGADKVPGISDVPLLGSLFKQSSKQHKRRELVIFITPTLIK 412 >gi|157960066|ref|YP_001500100.1| type IV pilus secretin PilQ [Shewanella pealeana ATCC 700345] gi|157845066|gb|ABV85565.1| type IV pilus secretin PilQ [Shewanella pealeana ATCC 700345] Length = 688 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 71/298 (23%), Positives = 125/298 (41%), Gaps = 26/298 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204 +L G ++ S+ +V + E + ++ + +++ +L+I + QV ++ + Sbjct: 389 LLKGEDSSLLTSRGSVAVDERTNTLLVKDTEETLENIHRLIEVLDIPIK-QVLIEARMVT 447 Query: 205 VRRDILKQIGFQHSITGSSS--GPSKSF--AADFGGKFVSEGGD---------------- 244 V+ D+ + +G + +T G S S A D V D Sbjct: 448 VKDDVSEDLGVRWGVTDQQGDKGTSGSLEGAGDIANGIVPSLSDRLNVNLPAAVANPTSI 507 Query: 245 -FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F V + D + L ALE+ +A P +T + ++A G + Y SSS G Sbjct: 508 AFHVAKLADGTVLDLELSALEQENKGEIIASPRITTSNQKAAFIEQGVEIPYVEASSS-G 566 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVE 361 AT+VT + L TP + R+ L ++ V+ G S ++ T V Sbjct: 567 ATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGQAVSIDTQRIGTQVL 626 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G TIVL G+ + + +P+L IP LG +FR++ E E+ I TP +V Sbjct: 627 VDHGETIVLGGIYQQQLISRVSKVPILGDIPYLGFMFRSTSDKNERQELLIFVTPKIV 684 >gi|302184967|ref|ZP_07261640.1| general secretion pathway protein D [Pseudomonas syringae pv. syringae 642] Length = 775 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 102/262 (38%), Gaps = 19/262 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ I EV+ +G Q + +SG + + G + G ++ Sbjct: 501 PLQVQIETRILEVQLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 560 Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + + L ALE + L+ P+L ++ Q A G S +T Sbjct: 561 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 620 Query: 305 T------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRK 355 SV GV+L P + G + + IQ +VS D P R Sbjct: 621 NAGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTTSGTNDANGNPRISTRS 680 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V SG T++L GL+K D + +P L +IP L LF N+ ++ TE+ + T Sbjct: 681 VATQVAAQSGQTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLIT 740 Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437 P ++ + + D Y + Sbjct: 741 PRVI--TSSSQARQVTDDYRQQ 760 >gi|170724709|ref|YP_001758735.1| type IV pilus secretin PilQ [Shewanella woodyi ATCC 51908] gi|169810056|gb|ACA84640.1| type IV pilus secretin PilQ [Shewanella woodyi ATCC 51908] Length = 682 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 110/259 (42%), Gaps = 24/259 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--GPSKSFAA-------- 232 +++ +L+I QV ++ + V+ D+ + +G + I+ G S S Sbjct: 422 RLIKILDIPI-RQVLIEARMVTVKDDVSEDLGIKWGISDKQGSKGTSGSIGGAQDIANGI 480 Query: 233 ----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 +F + F V + D + L ALE+ +A P +T + Sbjct: 481 IPSVNDRLNVNFPAPEAAASIAFHVAKLADGTILDMELSALEQENKGEIIASPRITTSNQ 540 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340 ++A G + Y SSS GA +V+ + L TP + R+ L ++ V Sbjct: 541 KAAYIEQGVEIPYVEASSS-GAATVSFKKAVLSLRVTPQITPDNRVILDLEISQDSQGKV 599 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G++ S ++ T V + G TIVL G+ + ++ +P+L IP +G LFR+ Sbjct: 600 VATPLGEVVSIDTQRIGTQVLVDHGETIVLGGIYQQNLISRVSKVPVLGDIPFVGFLFRS 659 Query: 401 SRFNREETEIFIAATPFLV 419 + E E+ I TP ++ Sbjct: 660 TSDKNERQELLIFVTPKII 678 >gi|26991756|ref|NP_747181.1| type IV pilus secretin PilQ [Pseudomonas putida KT2440] gi|24986864|gb|AAN70645.1|AE016708_6 type IV pili biogenesis protein PilQ [Pseudomonas putida KT2440] Length = 420 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 106/248 (42%), Gaps = 6/248 (2%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGG 236 + ++++ L++ QV ++ I E D K +G + + G P K D G Sbjct: 173 AEMRQLVAQLDVP-VRQVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLG- 230 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G + + + L A+E++ +++P + ++A G + Y+ Sbjct: 231 -LERAGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQ 289 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 S S GATSV+ + + L TP + ++ + ++ EP ++P R + Sbjct: 290 ETSQS-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEV 348 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + V + G TIV+ G+ + + +P +P +G LFR +++E+ + TP Sbjct: 349 NAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 408 Query: 417 FLVKPVAM 424 ++ A+ Sbjct: 409 RIMSDQAI 416 >gi|332163311|ref|YP_004299888.1| putative outer membrane porin HofQ [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667541|gb|ADZ44185.1| putative outer membrane porin HofQ [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861918|emb|CBX72088.1| protein transport protein hofQ [Yersinia enterocolitica W22703] Length = 439 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L+++G + + + S +F + + F+V + Sbjct: 208 QQVQLAAHIVTMSRENLQELGVRWGMGDTKPTSSLRMSNFNVNLPLPNSAISAGFNVARI 267 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + LE+ I +A P L Q+AS G Y GAT++ Sbjct: 268 GGRLLELELSA-LEQENQIDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFK 326 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + GD + ++ T + + G TI Sbjct: 327 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETI 386 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + +P+L+ IP LG LF+ + E+ I TP L+ Sbjct: 387 VLGGIFQQKSSHGLNKVPILADIPWLGGLFKQDARQQSRRELVIFITPRLI 437 >gi|332994686|gb|AEF04741.1| putative type IV pilus biogenesis protein PilQ [Alteromonas sp. SN2] Length = 586 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 63/294 (21%), Positives = 118/294 (40%), Gaps = 26/294 (8%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G + + + + E + T L + + +K+++ L+I QV ++ + V Sbjct: 293 EGGILSERGTVTVDERTNTMLIRDTLPSIDEA--RKMIDALDIP-VKQVLIESRMVTVLD 349 Query: 208 DILKQIGFQHSITGSSSGPSKS--------------------FAADFGGKFVSEGGDFSV 247 ++ +++G + ++ S S + + F + Sbjct: 350 NVDEELGVRWGLSDRESDSGVSGSIEGAETIAGGSIPSIDDRLNVNLPVSSAAGTIGFQI 409 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 ++D + L ALE +A P +T + Q A G + Y +SS GATSV Sbjct: 410 ASLVDGTILDLELSALESENKGEIIASPRITVANQQEAYIEQGTEIPYVQATSS-GATSV 468 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 + L TP + RI L + + + + GD + ++ T V + +G Sbjct: 469 EFKKAVLSLRVTPQITPDNRIILDLVVTQDTRGETVSTSTGDAVAIDTQEIKTQVLVENG 528 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 TIVL G+ + +PL +P LG LFRN+ +E+ E+ I TP ++ Sbjct: 529 ETIVLGGIFQQTSTDSVSKVPLFGDLPFLGVLFRNTSEFQEKRELLIFVTPKII 582 >gi|323142233|ref|ZP_08077067.1| bacterial type II/III secretion system short domain protein [Phascolarctobacterium sp. YIT 12067] gi|322413296|gb|EFY04181.1| bacterial type II/III secretion system short domain protein [Phascolarctobacterium sp. YIT 12067] Length = 364 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 120/248 (48%), Gaps = 10/248 (4%) Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 + +++ ++++ L+IA QVTL+ I V R+ K +G + + P ++ + Sbjct: 97 EQSHARLRQLLPKLDIAT-RQVTLEAKIIAVSREDSKNMGVRW---DWDTIPQRAQETNN 152 Query: 235 GGKFVSE-GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G S G F F F L+AL + R LA P + I G+ AS G Sbjct: 153 GDSDSSNYDGSFKFWRGF-AFRFNATLNALINSGKARILATPRIITIPGKEASIFIGDHI 211 Query: 294 LYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAGDMPS 350 +T + T+ D G+ L + P + G+ + + TEVS PV+ ++ Sbjct: 212 PVQTEKHDSSGSYTATEYLDAGIKLQYAPIISEDGKMVTASVHTEVSTPVL-ISELKNYR 270 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R ADT V + SG T+V+ GL+ ++ Q+ + +P LSKIP+LG LF+N + +TE+ Sbjct: 271 ITSRTADTNVRMYSGETLVIGGLISEEQQRTMQKVPFLSKIPLLGELFKNRSRSHNKTEV 330 Query: 411 FIAATPFL 418 + TP + Sbjct: 331 LLLLTPHI 338 >gi|301382657|ref|ZP_07231075.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato Max13] gi|302060641|ref|ZP_07252182.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato K40] gi|302130950|ref|ZP_07256940.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331016027|gb|EGH96083.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 701 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 57/273 (20%), Positives = 117/273 (42%), Gaps = 23/273 (8%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------- 224 + Q +++++ L+I QV ++ I E D KQ+G + + ++S Sbjct: 427 QTQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSRNGKWTTY 485 Query: 225 --------GPSKSFAADFGGKFVSEGGDFSVKGV-----LDRFSFETVLHALERATAIRT 271 G + + FV G + G+ + + L A+E+ Sbjct: 486 GLDDNGDEGGNTNANLTSNIPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEI 545 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP + RI + Sbjct: 546 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQITPDNRIIME 604 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EP +P + + + V + G TIV+ G+ + ++ + +P L + Sbjct: 605 VKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDV 664 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P LG LFR + ++E+ + TP ++ A+ Sbjct: 665 PYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 697 >gi|87122896|ref|ZP_01078763.1| type IV pili biogenesis protein PilQ [Marinomonas sp. MED121] gi|86161822|gb|EAQ63120.1| type IV pili biogenesis protein PilQ [Marinomonas sp. MED121] Length = 390 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 11/230 (4%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKFVSEGGDFSVKGV 250 Q+ + IA+V+ + QIG + G +G + S A+ D + G F+V Sbjct: 165 RQIEISARIAQVQNAVESQIGVEW--QGQLAGDTLSTASGLVDLATTSSTSGLSFAVAKS 222 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 D + L LE ++EP + GQ A SG + Y+T S T V Sbjct: 223 DDLLALN--LSFLESNGLANIVSEPKIVTAEGQMAKIESGTEVPYQT--SDDEGTHVEFK 278 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 G+ L P V ++ L ++ +G +PS + +T V + + T+VL Sbjct: 279 QAGLTLEVIPFVKQGDKVQLSLKIYQD--AVGEMYNGVPSIETNRINTQVLVGNQETLVL 336 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G+ +D++ + +P +P +GALFR+ +E+ E+ + TP L++ Sbjct: 337 GGIYRDEVWESTSKVPFFGDLPFVGALFRHQAQRQEKVELLVFITPKLLQ 386 >gi|109896995|ref|YP_660250.1| type IV pilus secretin PilQ [Pseudoalteromonas atlantica T6c] gi|109699276|gb|ABG39196.1| type IV pilus secretin PilQ [Pseudoalteromonas atlantica T6c] Length = 580 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 69/323 (21%), Positives = 133/323 (41%), Gaps = 27/323 (8%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-QYAN 178 +A L + + + + + V+ +L +I + +V + E + R+ Q + Sbjct: 255 VAQLAPLISANLQINYAKAKEVAG--ILKNTDSSILSPRGSVAVDERTNTVLLRDTQTSI 312 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------- 229 ++K++ L+I QV ++ + VR + +Q+G + + +S + S Sbjct: 313 DEARKLIRALDIP-VKQVLIESRMVTVRDNAGEQLGVRWGFSNNSGDTATSGSIEGADTL 371 Query: 230 -----------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + V ++D + L ALE +A P +T Sbjct: 372 SSGVVPSIDNRLNVNLPVTNPAGSIGIQVARLVDGTILDLELSALESENKGEVIASPRIT 431 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEV 336 + + A G + Y S+S+GATSV + L TP + RI L + + Sbjct: 432 VANQREAYIEQGTEIPY-VQSTSSGATSVEFKKAVLSLKVTPHITPDHRIILDLVVTQDT 490 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + + G + ++ T V + +G TIVL G+ + +PLL IP+LG Sbjct: 491 RGDTVNTSTGLAVAIDTQEISTQVLVNNGETIVLGGIFQQTTTDDVSQVPLLGDIPVLGH 550 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LF+N++ E+ E+ I TP ++ Sbjct: 551 LFKNTQTVNEKRELLIFVTPKIL 573 >gi|260886221|ref|ZP_05897484.1| putative secretin and TonB short domain protein [Selenomonas sputigena ATCC 35185] gi|260863940|gb|EEX78440.1| putative secretin and TonB short domain protein [Selenomonas sputigena ATCC 35185] Length = 462 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 91/452 (20%), Positives = 185/452 (40%), Gaps = 50/452 (11%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M R ++ + + P+ A ++ +A V + I + + + L+ + Sbjct: 16 MGISPRVGAFFLAAWFAGALPAAASPLTLEVVDADVTALL-TSIARLSGLDLILDDSVKG 74 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDIL 115 ++ + ++DV +P +A + L + G A V+L+ + + Sbjct: 75 RISLSLKDV---EPEEA---------LMLISRAKGLAVQHEGKVLLVRAAKEAAPFYRMH 122 Query: 116 I----ERDIAHLEMTLRRFIADSNIRV---EMVSDTVVLH--GMVRTIQDS--QRAVELS 164 + D+ ++ + ++ I + + G+ RT + RA Sbjct: 123 VLPVHHADLDTAFAAVKLSLGEAGISAIDENKKNGKEDISEQGLYRTGERLLIDRATNAL 182 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + ++ + ++ V++ L++ E QV+L+ + + ++ K++G + Sbjct: 183 LFYGTEE-----EKARAEAVLHSLDVPTE-QVSLEARVVALEKNAAKELGVDWDWSPLPI 236 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAE 274 P + + G + G D V GV+ F + + AL LA Sbjct: 237 DPHGTSKS--GAEGSRRGIDGEVPGVIRFGRTPEGKPYEFYYRAKIAALITDGKANVLAR 294 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRI 332 P +T + G+ A GG ++ + + G++L +TP + G I R+ Sbjct: 295 PNITTLQGREAVINIGGSVPVPETQTTNSTVTTSITYKKAGIILRYTPRIHENGEITARV 354 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 TEVS PV V+A ++ R ADTTV L G T+V+ GL+ + ++ +PLL IP Sbjct: 355 HTEVSSPVY-VDALKAYKFQERSADTTVRLKDGETMVIGGLIGSEESRVFAKVPLLGDIP 413 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 ILG F++ R + ++EI I T +++ + Sbjct: 414 ILGTFFKSVRRTKTDSEIMIFLTAHILRDTSP 445 >gi|222056148|ref|YP_002538510.1| type IV pilus secretin PilQ [Geobacter sp. FRC-32] gi|221565437|gb|ACM21409.1| type IV pilus secretin PilQ [Geobacter sp. FRC-32] Length = 911 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 20/243 (8%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSIT--------------GSSSGPSKSFAADFGG 236 E QV ++ I E ++ +G Q I + G + A G Sbjct: 674 TPEKQVMIEARIVEASTSFVRDLGVQWGIHYIDGSASVAGISRLDTGFGGQVAIAPTSGT 733 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 S + + L A A I+ ++ P + ++ + A + G Y+ Sbjct: 734 SGPGAAVGMSFGKLASNIQLDMRLSAAVTADQIKIMSTPRVVTLNNKPAKISQGASIPYQ 793 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 T S+ T + + L TP + S G IG++I+ + G P ++A Sbjct: 794 TTSAE--GTKTEFVEAALTLEVTPHITSDGSIGMKIKASNN----SAGTGSPPPINKKEA 847 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + + +G T V+ G+ D + +G+P L IP+LG LF+++ N+ + E+ I TP Sbjct: 848 TTELLIKNGETTVIGGIYVDSDTESDKGVPFLQDIPLLGWLFKSNTKNKSKNELLIFITP 907 Query: 417 FLV 419 +V Sbjct: 908 KIV 910 >gi|109896562|ref|YP_659817.1| general secretion pathway protein D [Pseudoalteromonas atlantica T6c] gi|109698843|gb|ABG38763.1| general secretion pathway protein D [Pseudoalteromonas atlantica T6c] Length = 689 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 72/345 (20%), Positives = 125/345 (36%), Gaps = 50/345 (14%) Query: 149 GMVRTIQDSQRAVELSETFLSQS---GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 G ++ + R + + S + S + V+ L+I QV ++ I EV Sbjct: 303 GAAKSTSKAARDISIEAHEDSNALVITAQPDMMRSLEDVIRQLDIR-RAQVQVEAIIVEV 361 Query: 206 RRDILKQIGFQH-----SITGSSSGPSKSFAA---------------------------- 232 +G Q S+G + Sbjct: 362 FEGDGTTVGVQWASEKYGAQQFSNGNVVGIGSLAVAAEQAEDTTTTTVGFDDDGDPYSFD 421 Query: 233 -----DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 D+ GG + + VL A+ T L+ P LT + + A F Sbjct: 422 ETTEGDYTALASLLGGVNGFLVGAVKDGWGAVLQAVSTDTNSNVLSTPHLTTLDNEEAFF 481 Query: 288 TSGGQHLYKTVSSSTGATS-----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 G + T S++ + V + G+ L TP + + L I+ EVS Sbjct: 482 IVGQEVPIITGSTTGSNNTNPFQSVERQEIGIKLKVTPQINEGNAVQLLIEQEVSSISGA 541 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + R+ TTV + GGTIVL GL+ DD+Q+ +P+L IP LG LF+++ Sbjct: 542 TSVDIL--INKREIKTTVIVDDGGTIVLGGLIDDDVQESVSKVPILGDIPYLGNLFKSTT 599 Query: 403 FNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFN 446 ++ + + + P +++ V D+SR +Y + K Sbjct: 600 TSKSKRNLMVFIRPTIIRDGVTASDISRKKYNYIRAEQLKRQSEG 644 >gi|330810080|ref|YP_004354542.1| type II secretion pathway protein D precursor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378188|gb|AEA69538.1| putative type II secretion pathway protein D precursor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 786 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 77/333 (23%), Positives = 133/333 (39%), Gaps = 33/333 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++LL+ QV ++ I EV D + G Q Sbjct: 432 QADATTNTLLISAPDPLYRN--LREVIDLLDQR-RAQVVIESLIVEVGEDDASEFGVQWQ 488 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSV------------------KGVLDRFSFETVL 260 TG+ G + GG ++ G S+ G+ + + Sbjct: 489 -TGNLGGSGVIGGVNLGGTGLNLNGKTSIDVLPQGLNLGVVNGTVDIPGIGKILDLKVLA 547 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDY 312 AL+ L+ P L + ++AS G + + S TG +VT + Sbjct: 548 RALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEV 607 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G+ L+ P + G + L I EVS ++ R DT++ L G +VL G Sbjct: 608 GLKLNVRPQISEGGTVKLDIYQEVSSVDNRASSTTGIVTNKRAIDTSILLDDGQIMVLGG 667 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPD 431 LL+D Q + +P LS IP +GALFRN R +T + + P++++ A R ++ Sbjct: 668 LLQDGYSQSNDAVPWLSTIPGIGALFRNERRQITKTNLMVFLRPYIIRDTAAGRGITL-- 725 Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 + Y A+ + +A ++ Sbjct: 726 NRYDFMRRAQGLLQPERSWALPDMQAPQLPASA 758 >gi|299065327|emb|CBJ36496.1| General Secretory Pathway protein D, type II secretion system [Ralstonia solanacearum CMR15] Length = 805 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 116/306 (37%), Gaps = 45/306 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V++ L+ A QV ++ I EV D Q+G Q + +FG Sbjct: 421 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 479 Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 G VS + +L AL Sbjct: 480 LNLGVIAATVGSGGIGSTAAQTALSSLTGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 539 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319 ++ L+ P L + + A G T S S T + D G+ L Sbjct: 540 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVK 599 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G + ++I E S V G NA P+ VR +T V G IVL GLL+D+ Sbjct: 600 PQITDGGTVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVIANDGQVIVLGGLLEDNY 659 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q ++ +P L IP+LGALFR+ R++T + + P++++ A + D+ Y Sbjct: 660 QDSEQKVPGLGDIPVLGALFRSESKTRKKTNLLVFLRPYILR-TAEATGALSDNRYGYMR 718 Query: 439 DAKAFF 444 DA+ F Sbjct: 719 DAQQGF 724 >gi|330989446|gb|EGH87549.1| general secretion pathway protein D [Pseudomonas syringae pv. lachrymans str. M301315] Length = 778 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 73/332 (21%), Positives = 128/332 (38%), Gaps = 31/332 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++ L+ QV ++ I EV D Q G Q Sbjct: 428 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G + G G ++ G+ + + + Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGFNVGVVRGAVTIPGIGEVLDLKVLAR 544 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313 AL+ L+ P L + ++AS G + T S TG +V + G Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L I EVS + R DT++ L G +VL GL Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDD 432 L+D Q E +P LS+IP+LG LFRN + +T + + P++++ R+++ + Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIRDSGTGRNITL--N 722 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 Y A+ N + +A ++ Sbjct: 723 RYEFMRRAQGNLRPERNWMLPDMQAPQLPSAA 754 >gi|90581085|ref|ZP_01236885.1| putative type II secretory pathway, component EpsD [Vibrio angustum S14] gi|90437781|gb|EAS62972.1| putative type II secretory pathway, component EpsD [Vibrio angustum S14] Length = 674 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 68/339 (20%), Positives = 126/339 (37%), Gaps = 52/339 (15%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194 ++ VS+ + T Q SQ + + + N S+ VMN L Sbjct: 283 LKGVSENIQAANKSNTPQVSQSSKDEVMISAHDA-TNSLIISAPSNVMNKLESIISQLDI 341 Query: 195 ---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------- 241 QV ++ I EV+ G Q S + A GG ++ Sbjct: 342 RRAQVHIEAMIVEVQEGDGVDFGVQWGSQDGSVIQFGNSGAPIGGLLSAQEAAKDKTTTQ 401 Query: 242 -----------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTL 272 GG + + ++ A++ + L Sbjct: 402 KRYDPDTGAELPPIVTTESGDLAPMAAFLGGVKGAAAAIALGDWTALVTAVQANRNVNVL 461 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGR 327 + P +T + Q A+ + G + T S + T+V D G+ L TP + Sbjct: 462 STPNITVLDNQEANLSVGQEVPVTTGSQTGSNNDNPFTTVERKDVGIQLKVTPQINEGDS 521 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + ++I+ VS+ A D+ + R+ T+V + G I L GL+++ + ++ +P+ Sbjct: 522 VQMKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQKVPI 580 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L IP+LGALFR++ E+T + + P +++ D Sbjct: 581 LGDIPVLGALFRSTNNQTEKTNLMVFIRPTILRDGMSAD 619 >gi|1170050|sp|P31780|GSPD_AERHY RecName: Full=General secretion pathway protein D; Flags: Precursor gi|551421|emb|CAA47124.1| ExeD [Aeromonas hydrophila] Length = 678 Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 109/264 (41%), Gaps = 24/264 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 ++V+ L+I QV ++ I E+ +G Q + T + G ++ Sbjct: 341 EQVVAKLDIR-RAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTNAGPGIGSVAIAA 399 Query: 241 -----EGGDFSVKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQSA 285 G + + + F+ + ++ AL T L+ P++ + + A Sbjct: 400 KDYKDNGTTTGLAKLAENFNGMAAGFYQGNWAMLVTALSTNTKSDILSTPSIVTMDNKEA 459 Query: 286 SFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 SF G + +T + ++ + +++ G L TP + + L I+ EVS Sbjct: 460 SFNVGQEVPVQTGTQNSTSGDTTFSTIERKTVGTKLVVTPQINEGDSVLLTIEQEVSSVG 519 Query: 341 IGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 D P++ R V + SG T+VL GL+ + ++ +PLL IP+LG LF Sbjct: 520 KQATGTDGLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEEVSKVPLLGDIPVLGYLF 579 Query: 399 RNSRFNREETEIFIAATPFLVKPV 422 R++ N + + + P +++ Sbjct: 580 RSTSNNTSKRNLMVFIRPTILRDA 603 >gi|17547833|ref|NP_521235.1| general secretion pathway protein D [Ralstonia solanacearum GMI1000] gi|17430138|emb|CAD16823.1| probable general secretory pathway d transmembrane protein [Ralstonia solanacearum GMI1000] Length = 805 Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 117/306 (38%), Gaps = 45/306 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V++ L+ A QV ++ I EV D Q+G Q + +FG Sbjct: 421 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 479 Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 G VS + +L AL Sbjct: 480 LNLGVIAATVGSGGIGSTAAQTALGSITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 539 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319 ++ L+ P L + + A G T S S T + D G+ L Sbjct: 540 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVK 599 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G + ++I E S V G NA P+ VR +T V G IVL GLL+D+ Sbjct: 600 PQITDGGMVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVIANDGQVIVLGGLLEDNY 659 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q ++ +P L IP+LGALFR+ R++T + + P++++ A + D+ Y+ Sbjct: 660 QDSEQKVPGLGDIPVLGALFRSESKTRKKTNLLVFLRPYILR-TAEATGALSDNRYNYMR 718 Query: 439 DAKAFF 444 DA+ F Sbjct: 719 DAQQGF 724 >gi|253699252|ref|YP_003020441.1| general secretion pathway protein D [Geobacter sp. M21] gi|251774102|gb|ACT16683.1| general secretion pathway protein D [Geobacter sp. M21] Length = 635 Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 109/273 (39%), Gaps = 19/273 (6%) Query: 169 SQSGRNQYANSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +S + +S NLL + QV ++ IAEV + K++G Q + + Sbjct: 321 DKSTNSLVIMASPTDYQNLLQVIQKLDRRSRQVFVQAMIAEVSANKAKELGVQWGVIAGA 380 Query: 224 SGPSKSFAADFG--GKFVSEGGDFSVKGVLD-------RFSFETVLHALERATAIRTLAE 274 S + S F G G + L F L AL A+ L+ Sbjct: 381 SNGTLSTVGTFDPFGAVAGLSGALQLADTLGITPPDGGVALFPATLKALHSNGALNVLST 440 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGL 330 P + + A G + + ++ T S+ D G++L P + I L Sbjct: 441 PNIMTSDNKEAEIFVGENVPFLSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYIKL 500 Query: 331 RIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 I E+S G R A T+V + + T+++ GL++D Q + IPLL Sbjct: 501 DIYQEISAVKDFGTATNPNLGSTKRSAKTSVVVKNTDTVIIGGLIQDTDQVTESKIPLLG 560 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 IP+LG LF+ R R++T + I TP ++K Sbjct: 561 DIPLLGWLFKTKRTTRDKTNLLIMLTPRIIKDA 593 >gi|300690062|ref|YP_003751057.1| general Secretory Pathway protein D, type II secretion system [Ralstonia solanacearum PSI07] gi|299077122|emb|CBJ49746.1| General Secretory Pathway protein D, type II secretion system [Ralstonia solanacearum PSI07] Length = 805 Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 73/306 (23%), Positives = 118/306 (38%), Gaps = 45/306 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V++ L+ A QV ++ I EV D Q+G Q + +FG Sbjct: 421 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 479 Query: 236 ------------GKFVSEGGDFSVKGVLD----------------RFSFETVLHALERAT 267 G S ++ G+ +L AL Sbjct: 480 LNLGVIAATVGSGGIGSTAAQTALSGITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 539 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319 ++ L+ P L + + A G T S S T + D G+ L Sbjct: 540 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSAASVTPFQTFDRKDVGITLRVK 599 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G + ++I E S V G NA P+ VR +T V G IVL GLL+D+ Sbjct: 600 PQITDGGLVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNY 659 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q ++ +P L IP+LGALFR+ R++T + + P++++ A + D+ Y+ Sbjct: 660 QDAEQKVPGLGDIPVLGALFRSESKQRKKTNLLVFLRPYILR-TAEATGALSDNRYNYMR 718 Query: 439 DAKAFF 444 D + F Sbjct: 719 DTQQGF 724 >gi|71735614|ref|YP_274395.1| general secretion pathway protein GspD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556167|gb|AAZ35378.1| general secretion pathway protein GspD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 778 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 77/332 (23%), Positives = 133/332 (40%), Gaps = 31/332 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++ L+ QV ++ I EV D Q G Q Sbjct: 428 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484 Query: 219 I----------------TGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLH 261 +G ++G S S G V G ++ G+ + + + Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313 AL+ L+ P L + ++AS G + T S TG +V + G Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L I EVS + R DT++ L G +VL GL Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDD 432 L+D Q E +P LS+IP+LG LFRN + +T + + P++++ R+++ + Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIRDSGTGRNITL--N 722 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 Y A+ N + +A ++ Sbjct: 723 RYEFMRRAQGNLRPERNWMLPDMQAPQLPSAA 754 >gi|120600633|ref|YP_965207.1| type IV pilus secretin PilQ [Shewanella sp. W3-18-1] gi|146294790|ref|YP_001185214.1| type IV pilus secretin PilQ [Shewanella putrefaciens CN-32] gi|120560726|gb|ABM26653.1| type IV pilus secretin PilQ [Shewanella sp. W3-18-1] gi|145566480|gb|ABP77415.1| type IV pilus secretin PilQ [Shewanella putrefaciens CN-32] Length = 683 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 25/261 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----AADFGGKF 238 +++ +L+I QV ++ + V+ ++ + +G + IT S A D Sbjct: 422 RLVEVLDIPI-RQVLIESRMVTVKDNVSEDLGIRWGITDQQGNKGSSGSLEGAQDIANGI 480 Query: 239 VSEGGD-----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 V GD F V + D + L ALE+ +A P +T + Sbjct: 481 VPSIGDRLNVNLPAQVDSAASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 540 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y S+S+GATSVT + L TP + R+ L ++ Sbjct: 541 QKAAYIEQGIEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSEGK 599 Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V P+ ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR Sbjct: 600 TVPTSTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFR 659 Query: 400 NSRFNREETEIFIAATPFLVK 420 N+ E E+ I TP +V Sbjct: 660 NTTDKNERQELLIFVTPKIVD 680 >gi|15603090|ref|NP_246162.1| ComE [Pasteurella multocida subsp. multocida str. Pm70] gi|12721580|gb|AAK03309.1| ComE [Pasteurella multocida subsp. multocida str. Pm70] Length = 444 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 17/246 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPSKSFAADFGGKF 238 +Q+ ++ I + + L+++G + + S +F Sbjct: 181 EQIAIEARIVTMTDESLQELGVRWGLFQATEQAHTIAGSLAANGFSNIENQLNVNFSTNS 240 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ + L ALER I +A P L + +SAS G + Y Sbjct: 241 APVGSIALQLAKINGRLLDLELTALEREKHIEIIASPRLLTTNKKSASIKQGTEIPYVMK 300 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356 + SV + + L TP + I L + + V + G++ S ++ Sbjct: 301 RGKDKSESVEFREAVLGLDVTPHISKDNTILLDLLITQNTLGAPVVYDKGEIVSIDKQEI 360 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V G TIVL G+ D + + +PLL +P+L +F ++ E+ I TP Sbjct: 361 NTQVVAQDGETIVLGGVFHDTMTKGVNKVPLLGDLPLLKHVFSQKTERHQKRELVIFVTP 420 Query: 417 FLVKPV 422 ++KP Sbjct: 421 HIIKPS 426 >gi|294341497|emb|CAZ89914.1| putative general secretion pathway protein [Thiomonas sp. 3As] Length = 884 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 119/320 (37%), Gaps = 55/320 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------- 234 ++V+ L++ QV ++ IAEV + Q+G Q S+G + Sbjct: 425 RRVIERLDVR-RAQVYVEALIAEVDANKAAQLGIQWQAIAGSAGNQNAIIGGSNYGTGGS 483 Query: 235 -----------GGKFVSEGGDFSVKGVLDRFS------------FETVLHALERATAIRT 271 GG + + + + + + L+ Sbjct: 484 NIINLQAAISGGGSSAATALASGSLAIPNGLNIGILHNVAGMATLGLLANFLQTQDGANI 543 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVL 323 L+ P L + + A G + T + T ++ D G+ L P + Sbjct: 544 LSAPNLMTLDNEEAKIVVGQNVPFVTGQYAQTGSSATVTPFQTIERKDVGLTLKVRPQIT 603 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + G I + + EVS NA + + R T V + G TIVL GL++D++ Q Sbjct: 604 AGGAIKMDVYQEVSSISSTTNAAGIIT-NKRSIQTAVLVNDGQTIVLGGLMQDNVSQNNS 662 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 IP L IP LGALFR++ ++T++ + P +V+ ED A Sbjct: 663 KIPGLGDIPGLGALFRSNSRTAQKTDLMVFLRPIVVR---------------TEDQGNAL 707 Query: 444 FFNRVNKIYGPKEASEVEGQ 463 R + + G ++ +++ Q Sbjct: 708 SQQRYDTMRGMQDRAQLPAQ 727 >gi|319428303|gb|ADV56377.1| type IV pilus secretin PilQ [Shewanella putrefaciens 200] Length = 683 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 25/261 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----AADFGGKF 238 +++ +L+I QV ++ + V+ ++ + +G + IT S A D Sbjct: 422 RLVEVLDIPI-RQVLIESRMVTVKDNVSEDLGIRWGITDQQGNKGSSGSLEGAQDIANGI 480 Query: 239 VSEGGD-----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 V GD F V + D + L ALE+ +A P +T + Sbjct: 481 VPSIGDRLNVNLPAQVDSAASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 540 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y S+S+GATSVT + L TP + R+ L ++ Sbjct: 541 QKAAYIEQGIEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSEGK 599 Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V P+ ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR Sbjct: 600 TVPTSTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFR 659 Query: 400 NSRFNREETEIFIAATPFLVK 420 N+ E E+ I TP +V Sbjct: 660 NTTDKNERQELLIFVTPKIVD 680 >gi|320328774|gb|EFW84773.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. race 4] Length = 778 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 77/332 (23%), Positives = 133/332 (40%), Gaps = 31/332 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++ L+ QV ++ I EV D Q G Q Sbjct: 428 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484 Query: 219 I----------------TGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLH 261 +G ++G S S G V G ++ G+ + + + Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313 AL+ L+ P L + ++AS G + T S TG +V + G Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L I EVS + R DT++ L G +VL GL Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDD 432 L+D Q E +P LS+IP+LG LFRN + +T + + P++++ R+++ + Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIRDSGTGRNITL--N 722 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 Y A+ N + +A ++ Sbjct: 723 RYEFMRRAQGNLRPERNWMLPDMQAPQLPSAA 754 >gi|197117937|ref|YP_002138364.1| type IV pilus secretin lipoprotein PilQ [Geobacter bemidjiensis Bem] gi|197087297|gb|ACH38568.1| type IV pilus secretin lipoprotein PilQ [Geobacter bemidjiensis Bem] Length = 946 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 102/243 (41%), Gaps = 20/243 (8%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGD-- 244 A E QV ++ I E + +G Q ++ S S FGG + G Sbjct: 709 APEKQVMIEARIVEATSTFTRDLGVQWGLSYRDGSASVAGINSVDTGFGGVVSAAGPGSS 768 Query: 245 --------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 S + + L A ++ ++ P + ++ ++A + G Y+ Sbjct: 769 GAGGLGLGMSFGKLTSNIKLDMRLAAAATIGQVKIISTPKVVTLNNKAAKISQGQSIPYQ 828 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 T S+ T + + L TP + + G + ++I+ + P G P ++A Sbjct: 829 TTSAE--GTKTEFVEAALTLEVTPHITADGSVSMKIKASNNSP----GTGSPPPINKKEA 882 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + + +G T V+ G+ D + G+P LS IP+LG LF+++ + +TE+ I TP Sbjct: 883 TTELVVSNGDTTVIGGIYVDSDTESDTGVPFLSDIPLLGWLFKSNSKQKTKTELLIFITP 942 Query: 417 FLV 419 +V Sbjct: 943 KIV 945 >gi|320324664|gb|EFW80738.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. B076] Length = 778 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 77/332 (23%), Positives = 133/332 (40%), Gaps = 31/332 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++ L+ QV ++ I EV D Q G Q Sbjct: 428 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484 Query: 219 I----------------TGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLH 261 +G ++G S S G V G ++ G+ + + + Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313 AL+ L+ P L + ++AS G + T S TG +V + G Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L I EVS + R DT++ L G +VL GL Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDD 432 L+D Q E +P LS+IP+LG LFRN + +T + + P++++ R+++ + Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIRDSGTGRNITL--N 722 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 Y A+ N + +A ++ Sbjct: 723 RYEFMRRAQGNLRPERNWMLPDMQAPQLPSAA 754 >gi|114045758|ref|YP_736308.1| type IV pilus secretin PilQ [Shewanella sp. MR-7] gi|113887200|gb|ABI41251.1| type IV pilus secretin PilQ [Shewanella sp. MR-7] Length = 684 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 25/260 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240 +++ +L+I QV ++ + V+ D+ + +G + +T S + G + Sbjct: 423 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIATGT 481 Query: 241 -------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 F V + D + L ALE+ +A P +T + Sbjct: 482 VPSLDNRLNVNLPAAVTNPTSIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 541 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y S+S+GATSVT + L TP + R+ L ++ Sbjct: 542 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 600 Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V+ P+ ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR Sbjct: 601 TVDTPTGPAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 660 Query: 400 NSRFNREETEIFIAATPFLV 419 N+ E E+ I TP +V Sbjct: 661 NTTDKNERQELLIFVTPKIV 680 >gi|313895052|ref|ZP_07828609.1| type IV pilus secretin PilQ [Selenomonas sp. oral taxon 137 str. F0430] gi|312975947|gb|EFR41405.1| type IV pilus secretin PilQ [Selenomonas sp. oral taxon 137 str. F0430] Length = 426 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 18/288 (6%) Query: 148 HGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 G + D+ R V+ + L G A + +++++ L++ QV+L+ + V Sbjct: 140 SGNEVSASDTGRRVLVDTATNTLLFYGTEAEAF-AVREIISALDVK-PRQVSLEARVVSV 197 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-----------SVKGVLDRF 254 + KQ+G + + PS G+ G GV F Sbjct: 198 SKAAAKQLGVDWTWSALPQYPSVDAGGRVTGRSTGGGRTGTSAPGIIRFGRGPAGVPYEF 257 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDY 312 + + AL + LA P +T + G+ A G + T+S +++ + Sbjct: 258 YYSAAISALITDGKAKMLARPNVTTVQGREALINIGAEVPVPRTTMSDHVTTSAIDYREA 317 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G++L +TP V + G I R+ TEVS PV V ++ R ADTTV L G T+V+ G Sbjct: 318 GIILRYTPRVTADGTITARVHTEVSTPVY-VEELKAYRFQKRSADTTVRLRDGETMVIGG 376 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L+ D + IP L +P+LGA FR+ R N+ E+E+ I T ++ Sbjct: 377 LIDSDESRSLSKIPFLGDLPVLGAFFRSVRTNKTESELMIFLTARVLD 424 >gi|296446147|ref|ZP_06888095.1| general secretion pathway protein D [Methylosinus trichosporium OB3b] gi|296256341|gb|EFH03420.1| general secretion pathway protein D [Methylosinus trichosporium OB3b] Length = 785 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 124/265 (46%), Gaps = 20/265 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAAD--F 234 KV+ L++ +QV ++ TIAEV + G + S+ S G + + AA+ Sbjct: 489 KVVETLDVL-PNQVFIEATIAEVTLNDDLSFGVRWFLQKNASMGAFSDGDTGTPAANDTL 547 Query: 235 GGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + + G + + + L AL + T + ++ P+LT + + A G Sbjct: 548 GNNLLGAAVGAAFPGFAYAVRAANTQVTLSALNQITNVNIISTPSLTVLDNRQAVLQVGD 607 Query: 292 QHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Q T++ + SV D GV+L TP + GR+ L ++ EVS G +A Sbjct: 608 QVPVTTLTGANTNGGVTTFNSVNYRDTGVILSITPHINESGRVMLELEQEVSNVASGTSA 667 Query: 346 -GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P+ + R+ T V + +++L GL++D + IP++ IP+ G F++ + Sbjct: 668 TSTTPTIKQRRVKTQVVVNDSESLMLGGLIQDSSSRGSSQIPVIGDIPLFGNAFKSKTNS 727 Query: 405 REETEIFIAATPFLVKPVA-MRDLS 428 +TE+ I TP +V+ +A RD++ Sbjct: 728 AGKTELLIMITPHVVRTLAEARDIT 752 >gi|78222195|ref|YP_383942.1| type II and III secretion system secretin [Geobacter metallireducens GS-15] gi|78193450|gb|ABB31217.1| type II and III secretion system protein:NolW-like protein:Secretin/TonB, short-like protein [Geobacter metallireducens GS-15] Length = 870 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 111/254 (43%), Gaps = 17/254 (6%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + + ++ L+I E QV ++ I E + +++G Q I + AD G Sbjct: 620 AEMRNLLKSLDIP-EKQVMIEARIVEASSTVTQELGIQWGIHARDANTIGVTNADVGFGG 678 Query: 239 VSEG-------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + G + ++ S + L AL I+ ++ P + ++ ++A Sbjct: 679 ILTGLAPTAGTFGPGAAAGITFGKLISGGSLDLKLSALASGERIKIISSPKVVTLNNKAA 738 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 + G Y TVS+ T + + L TP + S G I ++I+ + Sbjct: 739 KISQGQSIPYSTVSAE--GTKTEFVEAALTLEVTPHIASDGSISMKIKATNNSAAPAPT- 795 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 G +P+ ++A T + + +G T V+ G+ D+ Q +G+P IP+LG LF++S + Sbjct: 796 GAVPAINKKEATTELLVRNGETTVIGGIYVDNDSQADQGVPFFKDIPLLGWLFKSSNTQK 855 Query: 406 EETEIFIAATPFLV 419 + E+ I TP +V Sbjct: 856 IKNELLIFITPKIV 869 >gi|117922327|ref|YP_871519.1| type IV pilus secretin PilQ [Shewanella sp. ANA-3] gi|117614659|gb|ABK50113.1| type IV pilus secretin PilQ [Shewanella sp. ANA-3] Length = 684 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 25/260 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240 +++ +L+I QV ++ + V+ D+ + +G + +T S + G + Sbjct: 423 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIANGV 481 Query: 241 -------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 F V + D + L ALE+ +A P +T + Sbjct: 482 VPSLDNRLNVNLPAAVTNPTSIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 541 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y S+S+GATSVT + L TP + R+ L ++ Sbjct: 542 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 600 Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V+ P+ ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR Sbjct: 601 TVDTPTGPAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 660 Query: 400 NSRFNREETEIFIAATPFLV 419 N+ E E+ I TP +V Sbjct: 661 NTTDKNERQELLIFVTPKIV 680 >gi|320529858|ref|ZP_08030935.1| type IV pilus secretin PilQ [Selenomonas artemidis F0399] gi|320137876|gb|EFW29781.1| type IV pilus secretin PilQ [Selenomonas artemidis F0399] Length = 426 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 18/288 (6%) Query: 148 HGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 G + D+ R V+ + L G A + +++++ L++ QV+L+ + V Sbjct: 140 SGNEVSASDTGRRVLVDTATNTLLFYGTEAEAF-AVREIISALDVK-PRQVSLEARVVSV 197 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-----------SVKGVLDRF 254 + KQ+G + + PS G+ G GV F Sbjct: 198 SKAAAKQLGVDWTWSALPQYPSVDAGGRVTGRSTGGGRTGTSAPGIIRFGRGPAGVPYEF 257 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDY 312 + + AL + LA P +T + G+ A G + T+S +++ + Sbjct: 258 YYSAAISALITDGKAKMLARPNVTTVQGREALINIGAEVPVPRTTMSDHVTTSAIDYREA 317 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G++L +TP V + G I R+ TEVS PV V ++ R ADTTV L G T+V+ G Sbjct: 318 GIILRYTPRVTADGTITARVHTEVSTPVY-VEELKAYRFQKRSADTTVRLRDGETMVIGG 376 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L+ D + IP L +P+LGA FR+ R N+ E+E+ I T ++ Sbjct: 377 LIDSDESRSLSKIPFLGDLPVLGAFFRSVRTNKTESELMIFLTARVLD 424 >gi|113972026|ref|YP_735819.1| type IV pilus secretin PilQ [Shewanella sp. MR-4] gi|113886710|gb|ABI40762.1| type IV pilus secretin PilQ [Shewanella sp. MR-4] Length = 684 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 25/260 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240 +++ +L+I QV ++ + V+ D+ + +G + +T S + G + Sbjct: 423 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIANGT 481 Query: 241 -------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 F V + D + L ALE+ +A P +T + Sbjct: 482 VPTLDNRLNVNLPAAVTNPTSIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 541 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y S+S+GATSVT + L TP + R+ L ++ Sbjct: 542 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 600 Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V+ P+ ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR Sbjct: 601 TVDTPTGPAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 660 Query: 400 NSRFNREETEIFIAATPFLV 419 N+ E E+ I TP +V Sbjct: 661 NTTDKNERQELLIFVTPKIV 680 >gi|331010889|gb|EGH90945.1| general secretion pathway protein D [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 778 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 73/332 (21%), Positives = 128/332 (38%), Gaps = 31/332 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++ L+ QV ++ I EV D Q G Q Sbjct: 428 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G + G G ++ G+ + + + Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 544 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313 AL+ L+ P L + ++AS G + T S TG +V + G Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L I EVS + R DT++ L G +VL GL Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDD 432 L+D Q E +P LS+IP+LG LFRN + +T + + P++++ R+++ + Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIRDSGTGRNITL--N 722 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 Y A+ N + +A ++ Sbjct: 723 RYEFMRRAQGNLRPERNWMLPDMQAPQLPSAA 754 >gi|217967423|ref|YP_002352929.1| type II and III secretion system protein [Dictyoglomus turgidum DSM 6724] gi|217336522|gb|ACK42315.1| type II and III secretion system protein [Dictyoglomus turgidum DSM 6724] Length = 1421 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 13/242 (5%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 SS + ++ L+ QV + V + EV R+ +K IG + S S+G A+ G + Sbjct: 1192 SSVESMIAKLDKPTP-QVKIDVQVIEVSRENVKDIGIEWSTGSISTG--LQITANLGWQD 1248 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + +++ + ALE R LA+P++T +SG++ G + + Sbjct: 1249 LR-------VSIVNPGQISANIRALETQNKARILAQPSMTTLSGKATRIMIGDRVPLISY 1301 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 + G V+ D G++L+ TPTV + G I I +VS V+ D+P R+A T Sbjct: 1302 -DAQGNRQVSFVDVGIILNVTPTVNADGTITANINPQVSTIQGYVS--DVPIISTREAQT 1358 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V L +G T+ L GLL+ + +PLL IPILG LF+ + + E E+ I TP L Sbjct: 1359 IVNLKNGETLALGGLLRQEEIDSMSKVPLLGDIPILGELFKARKTQKVERELIILITPKL 1418 Query: 419 VK 420 ++ Sbjct: 1419 IE 1420 >gi|114561562|ref|YP_749075.1| type IV pilus secretin PilQ [Shewanella frigidimarina NCIMB 400] gi|114332855|gb|ABI70237.1| type IV pilus secretin PilQ [Shewanella frigidimarina NCIMB 400] Length = 682 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 66/262 (25%), Positives = 113/262 (43%), Gaps = 29/262 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ +L+I + QV ++ + V+ D+ + +G + IT SK + GG Sbjct: 421 RLIEVLDIPIK-QVLIEARMVTVKDDVSEDLGIRWGITDQQG--SKGTSGTIGGATSIAN 477 Query: 243 GD-----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G F V + D + L ALE+ +A P +T Sbjct: 478 GTIPSIDDRLNVNLPAAASSATSIAFHVAKLADGTVLDLELSALEQENKGEIIASPRITT 537 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVS 337 + +SA G + Y S+S+GAT+VT + L TP + R+ L I + Sbjct: 538 SNQKSAYIEQGVEIPYVE-SASSGATTVTFKKAVLSLRVTPQITPDDRVILDLEITQDSQ 596 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + G+ + ++ T V + +G TIVL G+ + ++ +P+L IP++G L Sbjct: 597 GTTVATATGEAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFL 656 Query: 398 FRNSRFNREETEIFIAATPFLV 419 FRNS E E+ I TP +V Sbjct: 657 FRNSTDTNERQELLIFVTPKIV 678 >gi|307132897|ref|YP_003884913.1| putative fimbrial transporter [Dickeya dadantii 3937] gi|306530426|gb|ADN00357.1| predicted fimbrial transporter [Dickeya dadantii 3937] Length = 417 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 120/313 (38%), Gaps = 17/313 (5%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L R+ + N+ V + V T SQR L+E + Sbjct: 100 ELAAKQRQQLPLQNLSVTL---QYAEAADVATSLQSQRGTLLTERGSVTVDKRTNTLLVR 156 Query: 182 KKVMNLLNIAGE--------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 V L I QV L I + + LK +G + +++ + Sbjct: 157 DVVSALEQIRPWLGELDKPLAQVQLAAHIVTISSEHLKALGVNWGLGDATTTGQALQMNN 216 Query: 234 FGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 F E + L+ + L ALE+ + +A P L Q+AS G Sbjct: 217 FSVSLPVESPAVNAGFHLAKLNGRLLDLELMALEQENEVEIIASPRLFTAHQQTASIKQG 276 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--- 347 + Y+ S ++G+TS+ + + + TP +L G+I L + + P + G+ Sbjct: 277 TEIPYQVSSGASGSTSIEFKEAVLGMEVTPRILHGGQITLNLLISQNMPGRAIKQGEGSE 336 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ T V + G TIVL G+ + Q + +P LS +P +G FR+ Sbjct: 337 ILAIDKQEIQTQVTVLDGETIVLGGIFQQQKNQGERQVPGLSALPGIGQWFRSGNQQHTR 396 Query: 408 TEIFIAATPFLVK 420 E+ I TP L++ Sbjct: 397 RELVIFITPTLIQ 409 >gi|148550155|ref|YP_001270257.1| type IV pilus secretin PilQ [Pseudomonas putida F1] gi|148514213|gb|ABQ81073.1| type IV pilus secretin PilQ [Pseudomonas putida F1] Length = 420 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 106/248 (42%), Gaps = 6/248 (2%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGG 236 + ++++ L++ QV ++ I E D K +G + + G P K D G Sbjct: 173 AEMRQLVAQLDVP-VRQVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLG- 230 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G + + + L A+E++ +++P + ++A G + Y+ Sbjct: 231 -LERAGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQ 289 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 S S GATSV+ + + L TP + ++ + ++ EP ++P R + Sbjct: 290 ETSQS-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEV 348 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + V + G TIV+ G+ + + +P +P +G LFR +++E+ + TP Sbjct: 349 NAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 408 Query: 417 FLVKPVAM 424 ++ A+ Sbjct: 409 RIMSDQAI 416 >gi|283788039|ref|YP_003367904.1| T2SS protein D [Citrobacter rodentium ICC168] gi|282951493|emb|CBG91192.1| putative T2SS protein D [Citrobacter rodentium ICC168] Length = 662 Score = 193 bits (490), Expect = 7e-47, Method: Composition-based stats. Identities = 68/313 (21%), Positives = 118/313 (37%), Gaps = 34/313 (10%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 NQ + V+ L+I QV ++ I EV+ +G Q + + + Sbjct: 324 TANQSQLQQLEPVIEKLDIR-RAQVLVEAIIVEVQDGKGLNLGVQWANKNIGATQFTNTG 382 Query: 232 ADFGGK------FVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 F +GG S D FS + +L AL + L Sbjct: 383 LPIFNAAQGVKEFKKQGGITSDNPAYDLFSKYRGMAAGFFSGDWAVLLTALSSDSKNDIL 442 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + P++ + + ASF G +T S ++V G L TP + + Sbjct: 443 STPSIVTLDNKEASFNVGQDVPVLSGSQTTSGDNIYSTVERKTVGTKLKVTPQINEGDSV 502 Query: 329 GLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + I+ EVS ++ + P++ R V + SG T+VL GL+ D ++ +PL Sbjct: 503 LMEIEQEVSSVDSTASSSSLGPTFNTRTIQNAVLVKSGETVVLGGLMDDSSKEEVSKVPL 562 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L IP +G LFR + + + + + P +++ DD Y K F Sbjct: 563 LGDIPFIGQLFRYTNHEKSKRNLMVFIRPTIIRD---------DDVYRSLSREKYTHFRD 613 Query: 448 VNKIYGPKEASEV 460 + K K +S++ Sbjct: 614 IQKTRADKNSSQL 626 >gi|313501056|gb|ADR62422.1| PilQ [Pseudomonas putida BIRD-1] Length = 384 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 106/248 (42%), Gaps = 6/248 (2%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGG 236 + ++++ L++ QV ++ I E D K +G + + G P K D G Sbjct: 137 AEMRQLVAQLDVP-VRQVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLG- 194 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G + + + L A+E++ +++P + ++A G + Y+ Sbjct: 195 -LERAGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQ 253 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 S S GATSV+ + + L TP + ++ + ++ EP ++P R + Sbjct: 254 ETSQS-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEV 312 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + V + G TIV+ G+ + + +P +P +G LFR +++E+ + TP Sbjct: 313 NAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 372 Query: 417 FLVKPVAM 424 ++ A+ Sbjct: 373 RIMSDQAI 380 >gi|291612969|ref|YP_003523126.1| general secretion pathway protein D [Sideroxydans lithotrophicus ES-1] gi|291583081|gb|ADE10739.1| general secretion pathway protein D [Sideroxydans lithotrophicus ES-1] Length = 690 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 71/355 (20%), Positives = 131/355 (36%), Gaps = 37/355 (10%) Query: 99 VILIGHDGKQMLNLDIL--IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 V + N+ ++ D L TLR ++ S G+ + Sbjct: 255 VTKLDSAANTPGNIHVVQLKNADATKLAQTLRSVLSGETAPPAAPSTVPQSAGVATSSTG 314 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 +A S + + Y N + V++ L++ Q+ ++ I EV D + G Q Sbjct: 315 MIQADPSSNALIVTASEPIYNN--LRSVIDKLDVRRP-QIFVEALIVEVTADKAAEFGVQ 371 Query: 217 HS--ITGSSSGPSKSFAADFGGKFVSEG---------------------GDFSVKGVLDR 253 + S SG +FG G ++ GV Sbjct: 372 WQNLVGASKSGAHIIGGTNFGSVASGNNIIDAANNLSTVNQGLNIGIVNGTTTIPGVGTV 431 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGAT 305 + + ALE T L+EP L + + A G + T +++T Sbjct: 432 LNLGMLARALETDTNANILSEPNLMTLDNEEAKIVVGQNVPFITGQYAQTGSATTATPFQ 491 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPS 364 ++ D G+ L P ++ G + L+I EVS + ++ R ++ + + Sbjct: 492 TIERKDVGLTLKIKPQIMQGGTVKLQIYQEVSSVLPSSSSSTSGLITNKRSIESNILVDD 551 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +VL GL++D + ++ PLL IPILG+LFR +T + + P+++ Sbjct: 552 NQIVVLGGLIQDSVNDVQSKTPLLGDIPILGSLFRYDTRQHTKTNLMVFIRPYIM 606 >gi|66046370|ref|YP_236211.1| type II and III secretion system protein:NolW-like [Pseudomonas syringae pv. syringae B728a] gi|63257077|gb|AAY38173.1| type II and III secretion system protein:NolW-like [Pseudomonas syringae pv. syringae B728a] Length = 776 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 106/261 (40%), Gaps = 18/261 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ I EV+ +G Q + +SG + + G + G ++ Sbjct: 503 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 562 Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + + L ALE + L+ P+L ++ Q A G S +T Sbjct: 563 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 622 Query: 305 ------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKA 356 +SV GV+L P + G + + IQ +VS+ +A P R Sbjct: 623 NTGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADSSGTTDANGNPRISTRSV 682 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V SG T++L GL+K D + +P L +IP L LF N+ +++ TE+ + TP Sbjct: 683 ATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITP 742 Query: 417 FLVKPVAMRDLSRPDDHYSVE 437 ++ + + D Y + Sbjct: 743 RVI--TSSSQARQVTDDYRQQ 761 >gi|307131917|ref|YP_003883933.1| general secretion pathway protein D [Dickeya dadantii 3937] gi|399825|sp|Q01565|GSPD2_DICD3 RecName: Full=General secretion pathway protein D; AltName: Full=Pectic enzymes secretion protein outD; Flags: Precursor gi|581156|emb|CAA46370.1| outD [Erwinia chrysanthemi] gi|306529446|gb|ADM99376.1| General secretion pathway protein D [Dickeya dadantii 3937] Length = 710 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 67/307 (21%), Positives = 123/307 (40%), Gaps = 31/307 (10%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 T+ + G T++ + L T R+ ++V+N L+I QV + Sbjct: 350 SSGGRTITIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 402 Query: 199 KVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGGKFVSEGGDFS------ 246 + IAE++ +G Q + +++G S A +F S G + Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAVIGTDQFRSNGTLTTAYASAL 462 Query: 247 -----VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 V R ++ +L AL + LA P++ + A+F G + T S + Sbjct: 463 SSFNGVTAGFYRGNWSMLLTALSSDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522 Query: 302 TGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVR 354 T A +V G+ L P + + L+I+ EVS N+ ++ R Sbjct: 523 TSADNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSTNSSLGVTFNTR 582 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + V + +G T+V+ GLL + + +PLL IP LG+LFR+ + + + Sbjct: 583 TVNNAVMVTNGETVVVGGLLDKTSVESNDKVPLLGDIPWLGSLFRSKSQEVRKRNLMLFL 642 Query: 415 TPFLVKP 421 P +++ Sbjct: 643 RPTIIRD 649 >gi|56460012|ref|YP_155293.1| Flp pilus assembly protein CpaC [Idiomarina loihiensis L2TR] gi|56179022|gb|AAV81744.1| possible Flp pilus assembly protein CpaC [Idiomarina loihiensis L2TR] Length = 404 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 91/370 (24%), Positives = 158/370 (42%), Gaps = 43/370 (11%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 + + I+ + D+L+SD + DV V L G VG+A++ + + Sbjct: 34 LEEGETRIISI-EPGSDILISDESVVDVHVLDNSRAILRGVGVGKADI--WLKSEEVLKE 90 Query: 112 LDILIERDIA-HLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVR--TIQDSQRAVELSETF 167 L I++ + LE L A+ ++ S VL G V ++ ++ E Sbjct: 91 LKIMVTASLKLSLEGRLEAISEAEQSLNKTEKSGLTVLSGKVSKRNYEELEKISE----- 145 Query: 168 LSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 + ++++NL +TL+V I E +R L+ +G + G++SG Sbjct: 146 ------------NHEEILNLTESFQEEPPMLTLRVNILETKRQYLEDLGIRW--QGTTSG 191 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 P +F++ G F + + L ++R + LA P L+ SG+ A Sbjct: 192 P--TFSSSLSGLFEWDA------------EINSQLMLMQRRGLAKLLANPVLSTQSGEKA 237 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 +F +GG+ V + G VT +YG+ L P VL RI ++ E+S V+ Sbjct: 238 TFLAGGELPIPQVVAQ-GMQDVTFREYGIRLVIQPVVLDDNRIKTQLHAELSNIDPAVSV 296 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P R+ ++ G T+VL+GLL D + IP L +PIL FR+ + Sbjct: 297 SGVPGILSRRTESVFLSNDGDTLVLSGLLSTDESAQDDQIPGLGSLPILENAFRSQQNRE 356 Query: 406 EETEIFIAAT 415 + TE+ I T Sbjct: 357 QTTELIIMVT 366 >gi|313673420|ref|YP_004051531.1| type ii and iii secretion system protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940176|gb|ADR19368.1| type II and III secretion system protein [Calditerrivibrio nitroreducens DSM 19672] Length = 786 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 127/286 (44%), Gaps = 22/286 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 V+ G V + + + S +F+ ++ A K V+ ++ QVT++ + EV Sbjct: 507 VVKG-VLSPRGKVQVESKSNSFVVTDTKDSIAK--VKNVLKEVDKPTP-QVTIEARVVEV 562 Query: 206 RRDILKQIGFQHSITGSSSGPSKSF------AADFGG-------KFVSEGGDFSVKGVLD 252 G + + S +F D GG + ++ + + Sbjct: 563 SDSNDLAYGIKWGANTKINRTSINFPNSIGINGDAGGYMVNLPIGAPTGALALTLGNISN 622 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F+ + + A+E +T++ P +T + Q A SGG+ + +T + ++ D Sbjct: 623 TFNIDMAISAMESRNKAKTISSPKITTLDNQEAEIKSGGKAIIVPSGDNTQSQTI---DV 679 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G+ L P + + I + I+ E S +G +G +KA T V L +G T V+ G Sbjct: 680 GIKLKVKPHITANNMIFMEIEVEKS--SLGAVSGTNAETLEKKAKTQVLLANGETTVIGG 737 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + +D+ ++K +P LSKIP+LG LFRN+ R + E+ + TP + Sbjct: 738 IYEDEQNEIKNEVPGLSKIPLLGWLFRNNIERRAKKELLVFITPRI 783 >gi|24371883|ref|NP_715925.1| type IV pilus biogenesis protein PilQ [Shewanella oneidensis MR-1] gi|24345706|gb|AAN53370.1|AE015476_11 type IV pilus biogenesis protein PilQ [Shewanella oneidensis MR-1] Length = 684 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 25/260 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240 +++ +L+I QV ++ + V+ D+ + +G + +T S + + G + Sbjct: 423 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGNKGTSGSLEGAGDIANGK 481 Query: 241 -------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 F V + D + L ALE+ +A P +T + Sbjct: 482 VPSLDNRLNVNLPAAVTNPTSIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 541 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y S+S+GATSVT + L TP + R+ L ++ Sbjct: 542 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 600 Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V+ P+ ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR Sbjct: 601 TVDTPTGPAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 660 Query: 400 NSRFNREETEIFIAATPFLV 419 N+ E E+ I TP +V Sbjct: 661 NTTDKNERQELLIFVTPKIV 680 >gi|332532305|ref|ZP_08408185.1| type IV pilus biogenesis protein PilQ [Pseudoalteromonas haloplanktis ANT/505] gi|332038172|gb|EGI74618.1| type IV pilus biogenesis protein PilQ [Pseudoalteromonas haloplanktis ANT/505] Length = 701 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 108/263 (41%), Gaps = 28/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSF--------- 230 ++++ L+I QV ++ + VR ++ + +G + + GSS G S S Sbjct: 438 RRMIETLDIP-VQQVVIESRMVTVRDNVTEDLGVRWGFSDQGSSVGISGSLEGAEGIYNA 496 Query: 231 -------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + + + + + L ALE +A P + Sbjct: 497 TSTSDAPSISDRLNVNLPITNPAASIGLHIAKLANGTLIDLELSALEEENKGEIIASPRI 556 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTE 335 A + Q A G + Y T S+S+GAT+V+ + L TP + ++ L I + Sbjct: 557 IAANQQKARIEQGTEIPY-TESASSGATTVSFKKAVLSLEVTPHITPDNKVILDLIITQD 615 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I +P+L IP +G Sbjct: 616 TRGDTVQTGTGEAVSIDTQEIQTQVLVENGQTVVLGGIFQQQIINTTSKVPILGDIPYVG 675 Query: 396 ALFRNSRFNREETEIFIAATPFL 418 LF+ + E+ E+ I TP + Sbjct: 676 RLFKTTSEFNEKRELLIFVTPKI 698 >gi|262370669|ref|ZP_06063994.1| type IV pilus biogenesis and competence protein pilQ [Acinetobacter johnsonii SH046] gi|262314469|gb|EEY95511.1| type IV pilus biogenesis and competence protein pilQ [Acinetobacter johnsonii SH046] Length = 390 Score = 192 bits (489), Expect = 8e-47, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 112/253 (44%), Gaps = 14/253 (5%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--- 238 +++++LL++A QV ++ I D +++G + S G S + DF F Sbjct: 143 RRMIDLLDVA-VKQVMVEARIVTASTDFSRELGIKWSA--KKLGNSPVWGGDFQPSFDLG 199 Query: 239 ----VSEGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + G F+ + + + L AL+ L+ P + Q A G + Sbjct: 200 VDLATNTAGTFNFGLLKISDYMLNLELSALQADGHGEVLSAPKVLTGDKQKAYILRGTEI 259 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 Y+T S++ G + + L TP++ G++ + ++ E +AG + Sbjct: 260 PYQTWSATEGLKT-EFRAANLKLEVTPSITPDGKVQMALKIEKDTVGTLTSAGYL--INT 316 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + +T V + G T+VL G+ D Q E +P +P++GALF+N+ + +TE+ I Sbjct: 317 NELETNVLVDDGETVVLGGIFDDIKQNQYEKVPFFGDLPVVGALFKNNTRSSAQTELLIF 376 Query: 414 ATPFLVKPVAMRD 426 TP +V R+ Sbjct: 377 VTPRIVNDSVSRN 389 >gi|17547022|ref|NP_520424.1| GSPD-like protein [Ralstonia solanacearum GMI1000] gi|17429323|emb|CAD16010.1| probable type II secretory pathway, gspd-related protein [Ralstonia solanacearum GMI1000] Length = 789 Score = 192 bits (489), Expect = 8e-47, Method: Composition-based stats. Identities = 87/436 (19%), Positives = 166/436 (38%), Gaps = 65/436 (14%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 + S+ + P + A + + + + +S+ ++ + + + + VS+ + D Sbjct: 185 AAASIMRKPVSLQFRDANVRMVFEALSRTTGLSVIFDRDVRVDLK---TTIFVSNASLED 241 Query: 79 VVVHSPRTMYL---FGKNVGQANVILIGHD--GKQMLNLDILI------ERDIAHLEMTL 127 V + L K V AN + I KQ D+ + D H++ L Sbjct: 242 TV----DMILLQNQLAKKVLNANTVFIYPATPAKQQEYQDLKVRTFQLSNTDAKHIDTLL 297 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + + I + ++TV + TI+ ++R + + Sbjct: 298 KNLLKIKEIVTDERANTVSIRATPETIRVAERMIAAQD---------------------- 335 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 E +V L+V + EV RD L +G + S PS A+ +G + Sbjct: 336 ---LPEPEVMLEVEVLEVSRDRLTDLGIDWPNSFSLGTPSS--ASTWGALHHLTVNQLTA 390 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---- 303 G+ + + T LA P + + + A G + + SS Sbjct: 391 SGLSVTANLKL------TDTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSGP 444 Query: 304 --ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--------YRV 353 + S+ D G+ L P V +G+++ EVS +++ + + Sbjct: 445 VYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNAQTGLSSLAYQIGT 504 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R A TT+ L G T +L GL++D+ + +P L ++P+LG LF N + ++TEI + Sbjct: 505 RNASTTLRLKDGETQILGGLIQDEDRDAANKVPGLGQLPVLGRLFSNHNGDHKKTEIVLQ 564 Query: 414 ATPFLVKPVAMRDLSR 429 TP +V+P D Sbjct: 565 ITPHIVRPQLAADADT 580 >gi|304438627|ref|ZP_07398566.1| type II and III secretion system protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368465|gb|EFM22151.1| type II and III secretion system protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 428 Score = 192 bits (489), Expect = 8e-47, Method: Composition-based stats. Identities = 82/334 (24%), Positives = 140/334 (41%), Gaps = 20/334 (5%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRA-V 161 D ++ ++ ++ D L + R + ++ QR V Sbjct: 97 RDAQRRVHTYVVRYADPEELAHAANLSLTGEGKRAIVSKNNKDTSENEDSDSDTPQRVLV 156 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + + L G A + ++++ L+ A QV+L+ + V + K++G S + Sbjct: 157 DTATNTLLFYGTESEA-RAVREIVFALDTA-PRQVSLEARVVAVSKRAAKELGIDWSWSS 214 Query: 222 ---------SSSGPSKSFAADFGGKFVSEGGDFSVK----GVLDRFSFETVLHALERATA 268 +SG + G S G G+ F + + AL Sbjct: 215 LPQYPDVSRDASGSWHVNGRNAGMDGTSAPGIIRFGRGPEGMPYEFYYTAAIRALVSEGK 274 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPG 326 + LA P +T + G+ A G + V++S T + + G++L +TP V + G Sbjct: 275 AKMLARPNVTTVQGREALINIGAEVPVPVVTTSNNVTTTGIEYREAGIILRYTPRVTADG 334 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I R+ TEVS PV V+ ++ R ADTTV L +G T+V+ GL+ D + IP Sbjct: 335 NIVARVHTEVSTPVF-VDDLKAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRTLAKIP 393 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L +P+LGA FR R +R ETE+ I T ++ Sbjct: 394 FLGDLPLLGAFFRTVRTSRNETELMIFLTAHVLD 427 >gi|145298443|ref|YP_001141284.1| S-protein secretion component D [Aeromonas salmonicida subsp. salmonicida A449] gi|142851215|gb|ABO89536.1| S-protein secretion component D [Aeromonas salmonicida subsp. salmonicida A449] Length = 719 Score = 192 bits (489), Expect = 8e-47, Method: Composition-based stats. Identities = 69/306 (22%), Positives = 116/306 (37%), Gaps = 23/306 (7%) Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVT 197 + V+T+ + + ++++ LL QV Sbjct: 407 NSGRAIPKSNNVQTMSVMTDQYRVVVDAKRNAIIFSGRYGDYQRLIELLQFVDQRPRQVL 466 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 L+ IAEV+ +GF+ ++ S + + G+ ++ GV Sbjct: 467 LQAVIAEVKLTNDSSLGFEWNVNKGDITGGTS-------GLIQQTGNLNLAGVFG--DVT 517 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------ATSVTT 309 A + L+ P L + ++AS G Q + KT S G TS Sbjct: 518 AKFAAALSEGNAKVLSSPRLVVLDQETASIKIGDQIVVKTGEISNGSSGNDPQVTTSYKY 577 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D G+ L TP++ G I + I E+S G GD P R + + SG T+ Sbjct: 578 IDTGLSLEITPSINDDGLIEMVISQEISSVSAG--GGDTPPINRRAVQSKLLADSGKTVY 635 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GLL +E +PLL IP+LG LF+ E+TE+ + TP+++ + + Sbjct: 636 LGGLLSQSNTNNEEKVPLLGDIPLLGNLFKYQTKKIEKTELVLLITPYVI--TSKEEAEF 693 Query: 430 PDDHYS 435 D + Sbjct: 694 YTDQFR 699 >gi|253701270|ref|YP_003022459.1| type IV pilus secretin PilQ [Geobacter sp. M21] gi|251776120|gb|ACT18701.1| type IV pilus secretin PilQ [Geobacter sp. M21] Length = 926 Score = 192 bits (489), Expect = 9e-47, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 102/243 (41%), Gaps = 20/243 (8%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGD-- 244 A E QV ++ I E + +G Q ++ S S FGG + G Sbjct: 689 APEKQVMIEARIVEATSTFTRDLGVQWGLSYRDGSASMAGINSVDTGFGGVVSAAGPGAT 748 Query: 245 --------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 S + + L A ++ ++ P + ++ ++A + G Y+ Sbjct: 749 GAGGLGLGMSFGKLTSNIKLDMRLAAAATIGQVKIISTPKVVTLNNKAAKISQGQSIPYQ 808 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 T S+ T + + L TP + + G + ++I+ + P G P ++A Sbjct: 809 TTSAE--GTKTEFVEAALTLEVTPHITADGSVSMKIKASNNSP----GTGSPPPINKKEA 862 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + + +G T V+ G+ D + G+P LS IP+LG LF+++ + +TE+ I TP Sbjct: 863 TTELVVSNGDTTVIGGIYVDSETESDTGVPFLSDIPLLGWLFKSNAKQKTKTELLIFITP 922 Query: 417 FLV 419 ++ Sbjct: 923 KII 925 >gi|163751641|ref|ZP_02158861.1| type IV pilus biogenesis protein PilQ [Shewanella benthica KT99] gi|161328467|gb|EDP99622.1| type IV pilus biogenesis protein PilQ [Shewanella benthica KT99] Length = 681 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 109/259 (42%), Gaps = 24/259 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--GPSKSF---------- 230 +++ +L+I QV ++ + V+ ++ + +G Q IT G S S Sbjct: 421 RLIEVLDIPI-RQVLIEARMVTVKDNVSEALGIQWGITDQQGDYGTSGSLRGAQSIANGI 479 Query: 231 --------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + S F V + D + L ALE+ +A P + + Sbjct: 480 IPALADRLNVALPARAGSASIAFHVARLADGTILDMELSALEQENRGEIIASPRIVTSNQ 539 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340 ++A G + Y SSS+GAT+V+ + L TP + R+ L ++ V Sbjct: 540 KAAYIEQGVEIPYIE-SSSSGATTVSFKKAVLSLRVTPHITPDNRVILDLEITQDSQGAV 598 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G+ S ++ T V + G TIVL G+ + ++ +P+L IP LG LFR+ Sbjct: 599 VATPMGEAVSIDTQRIGTQVLVNHGETIVLGGIYQQNLISRVTKVPILGDIPFLGFLFRS 658 Query: 401 SRFNREETEIFIAATPFLV 419 + + E E+ I T ++ Sbjct: 659 TSDSNERQELLIFITAKII 677 >gi|238783680|ref|ZP_04627700.1| General secretion pathway protein D [Yersinia bercovieri ATCC 43970] gi|238715393|gb|EEQ07385.1| General secretion pathway protein D [Yersinia bercovieri ATCC 43970] Length = 661 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 118/296 (39%), Gaps = 12/296 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++V+ L++ QV ++ I E + +G Q + S G + + Sbjct: 352 EQVIEKLDVR-RAQVLVEAIIVETQNAEGLNLGIQWA-NKYSGGINLLPRPGHARSHSEQ 409 Query: 242 GGDFSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + G+ F ++ + AL + LA P++ + A F G + T Sbjct: 410 PMPMVIAGLTAGFYKGNWNGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLTS 469 Query: 299 SSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SY 351 + +T S++ G++L P + + L I+ EVS N + Sbjct: 470 TQTTATDKVYNSISRQSVGIMLKVKPQINKGDSVLLEIRQEVSSVADSSNTNTNNLGFIF 529 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R + V + SG T+V+ GLL + + + IPLL IP +G LFR S+ +++ + Sbjct: 530 NKRAINNAVLVKSGETVVVGGLLDEKLSKTVNKIPLLGDIPFIGGLFRQSKEKVDKSNLI 589 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 + P +++ + D H +D N++Y A+E++ +Y Sbjct: 590 LFIKPTILRETNDYSVVTIDKHTKYKDSNSQENTINNNRLYHDLLATEIKSDSYNQ 645 >gi|238788960|ref|ZP_04632750.1| Protein transporter HofQ [Yersinia frederiksenii ATCC 33641] gi|238722987|gb|EEQ14637.1| Protein transporter HofQ [Yersinia frederiksenii ATCC 33641] Length = 376 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L ++G + + S F + + F+V + Sbjct: 145 QQVQLAAHIVTISRENLHELGVRWGMGEGKPNTSLKMSDFNVNLPLPNSAINAGFNVARI 204 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + LE+ + +A P L Q+AS G Y GAT++ Sbjct: 205 GGRLLELELSA-LEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSGGKKGATTIEFK 263 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + GD + ++ T + + G TI Sbjct: 264 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETI 323 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + Q +P+L IP LG LF+ + E+ I TP L+ Sbjct: 324 VLGGIFQQKSSQGVNKVPILGDIPWLGGLFKQDTQQQNRRELVIFITPRLI 374 >gi|167626227|ref|YP_001676727.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596228|gb|ABZ86226.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 582 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 102/246 (41%), Gaps = 9/246 (3%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFV 239 + V+N +++ DQV ++ I EV R ++GF ++++ S K+F V Sbjct: 334 RNVINEIDVPN-DQVLIEARIVEVTRTSGLELGFNYTVSHPSGVDVGLKTFGTASESDTV 392 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + S E + ALE + +A P L + ++A G Y+ + Sbjct: 393 VASTAKLAYTLAGGLSLEMEIRALENESLANQVASPHLVVANNETAFIKDGQDVPYQQAT 452 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVR 354 +S GA SV + + L TP + G I + + + P R Sbjct: 453 AS-GAASVAFQEAVLELQVTPQIAPDGNIVMEVLVTKNSVGASSGKTSTGEDLPPIIDKR 511 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + T V + G T+V+ G+ + + IP L IP LG LF N+ ++E+ I Sbjct: 512 EVTTKVMVKDGETVVIGGIYSKKQIETRNKIPFLGDIPYLGYLFSNTVIGDTDSELLIFI 571 Query: 415 TPFLVK 420 TP +++ Sbjct: 572 TPKIIE 577 >gi|238792887|ref|ZP_04636517.1| Protein transporter HofQ [Yersinia intermedia ATCC 29909] gi|238727741|gb|EEQ19265.1| Protein transporter HofQ [Yersinia intermedia ATCC 29909] Length = 406 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L+++G + + + S +F + + F+V + Sbjct: 175 QQVQLAAHIVTMSREHLQELGVRWGMDDAKQARSLRVNNFNVNLPLPNSALSAGFNVARI 234 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + E+ + +A P L Q+AS G Y G ++ Sbjct: 235 GGRLLELELSAL-EQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGGPTIEFK 293 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + GD + ++ T + + G TI Sbjct: 294 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAIKRGDSEALLIDKQEIKTQITVNDGETI 353 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + Q +P+L+ IP LGALF+ + E+ I TP L+ Sbjct: 354 VLGGIFQQKNSQGVNKVPILADIPWLGALFKQDTQQQSRRELVIFITPRLI 404 >gi|194291071|ref|YP_002006978.1| general secretory pathway protein d, type II secretion system [Cupriavidus taiwanensis LMG 19424] gi|193224906|emb|CAQ70917.1| General Secretory Pathway protein D, type II secretion system [Cupriavidus taiwanensis LMG 19424] Length = 831 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 118/305 (38%), Gaps = 39/305 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVS 240 + V++ L+ A QV ++ I EV ++G Q + SSSG + FA G Sbjct: 433 RGVIDDLD-ARRAQVYIESMIVEVTATQASELGIQWQGLISSSSGNNNVFAGTNFGTGGQ 491 Query: 241 EGGDFSVKGVLDRFS----------------------------FETVLHALERATAIRTL 272 + ++ G L + +L AL ++ L Sbjct: 492 NILNLTLAGALADSNRSAGIVAAQQLVPDIGGLNLGIVNRAMGLGALLRALGTNGSVNLL 551 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVT------THDYGVVLHFTPTVLS 324 + P L + + A G T S + GA SVT D G+ L P + Sbjct: 552 STPNLITLENEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITD 611 Query: 325 PGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G + ++I E S V N P+ VR +T V + G IVL GL++D+ + Sbjct: 612 GGLVKMQIFQESSNVVQATANLIQGPTTNVRSIETNVLVDDGQIIVLGGLIEDNYGDGVQ 671 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +PLL IP +G LFR NR +T + + P++++ D D + + + F Sbjct: 672 KVPLLGDIPWIGGLFRYENKNRSKTNLLVFLRPYVMRTAGATDRLTADRYDYMRAQQQGF 731 Query: 444 FFNRV 448 + Sbjct: 732 VSPNI 736 >gi|302392509|ref|YP_003828329.1| type II and III secretion system protein [Acetohalobium arabaticum DSM 5501] gi|302204586|gb|ADL13264.1| type II and III secretion system protein [Acetohalobium arabaticum DSM 5501] Length = 428 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 9/252 (3%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV ++ I +V D LK +G S + +D + GG ++ Sbjct: 180 QKQVIIEARIEDVSYDKLKDLGINWSFAKNRGDNKGEQISD---TDIENGGSGILEIGDV 236 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTT 309 ++ ++ AL+ TLA P + I G+ A G + + +T+++ Sbjct: 237 SMNYTAIIRALKSTDDSTTLANPRIATIDGKEAVINMGQEVPILKSEKDDDGQTSTNISF 296 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D G VL TP + +I + I+ EVSE G P +K +T + + +G TIV Sbjct: 297 RDVGTVLKITPRIN-NNQIRMNIKPEVSEVDHWE--GSYPVINTKKVETNIIVKNGETIV 353 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + GL+ + +PL +PI G LF++ R +E+ E+ I TP +++ D Sbjct: 354 IGGLISEKEINQLSKVPLFGDVPIFGELFKSRRTTKEKRELVIFITPRIIEDNGQADEEE 413 Query: 430 PDDHYSVEDDAK 441 D S+ K Sbjct: 414 KDFSASIHSKDK 425 >gi|312958540|ref|ZP_07773060.1| type IV pilus biogenesis protein [Pseudomonas fluorescens WH6] gi|311287083|gb|EFQ65644.1| type IV pilus biogenesis protein [Pseudomonas fluorescens WH6] Length = 460 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 107/262 (40%), Gaps = 23/262 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231 ++++ L+I QV ++ I E D K +G + + + Sbjct: 199 RRIVAQLDIP-VRQVMIEARIVEANVDYDKSLGARWGGAINRGNWAAGGIRKPVPDGEAP 257 Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 D G + G + + D + L A+E+ +++P + Sbjct: 258 PENLPSSPFVDLGSLTGTSG--LGIAYITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDK 315 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 ++A G + Y+ S+S GATSV+ + + L TP + + + ++ EP Sbjct: 316 ETARILKGTEIPYQE-STSQGATSVSFKEASLSLEVTPQITPDNHVIMVVKVTKDEPDYL 374 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 D+P + + + V + G TIV+ G+ + ++ + +P L +P LG LFR Sbjct: 375 NKLNDVPPIKKNEVNAKVLVKDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDV 434 Query: 403 FNREETEIFIAATPFLVKPVAM 424 +++E+ + TP ++ A+ Sbjct: 435 LAEKKSELLVFLTPRIMNNQAI 456 >gi|299066099|emb|CBJ37280.1| putative type II secretory pathway, gspd-related protein [Ralstonia solanacearum CMR15] Length = 792 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 91/405 (22%), Positives = 156/405 (38%), Gaps = 63/405 (15%) Query: 51 SIGLNKVIILQVPVDVQD-VLVSDPTKADVVVHSPRTMYL---FGKNVGQANVILIGHD- 105 + GLN + V D++ + VS+ D V + L K V AN + I Sbjct: 213 TTGLNVIFDRDVRTDLKTTIFVSNAALDDTV----DMILLQSQLAKKVLNANTVFIYPAT 268 Query: 106 -GKQMLNLDILI------ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 KQ D+ + D H++ L+ + I + ++TV + TI+ ++ Sbjct: 269 PAKQQEYQDLKVRTFQLSNTDAKHIDTLLKNLLKIKEIVTDERANTVSIRATPETIRVAE 328 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 R + + E +V L+V + EV RD L +G Sbjct: 329 RMIAAQD-------------------------LPEPEVMLEVEVLEVSRDRLTDLGIDWP 363 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + S PS AA +G + G+ +F+ T LA P + Sbjct: 364 NSFSLGTPSS--AATWGALHHLTVNQLTASGLSATANFKL------TDTDANLLASPRIR 415 Query: 279 AISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + A G + + SS + S+ D G+ L P V +G+++ Sbjct: 416 TRNKEKAKILIGDKVPVISSSSVPSTSGPVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKM 475 Query: 333 QTEVSEPVIGVNAGDMPS--------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 EVS +++ + + R A TT+ L G T +L GL++D+ + Sbjct: 476 SLEVSNITQIISSSNSQTGLSSLAYQIGTRNASTTLRLKDGETQILGGLIQDEDRDAANK 535 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 IP L ++P+LG LF N + ++TEI + TP +V+P D Sbjct: 536 IPGLGQLPVLGRLFSNHNGDHKKTEIVLQITPHIVRPQLAADADT 580 >gi|270157382|ref|ZP_06186039.1| type IV pilus assembly protein PilQ [Legionella longbeachae D-4968] gi|269989407|gb|EEZ95661.1| type IV pilus assembly protein PilQ [Legionella longbeachae D-4968] Length = 701 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 107/263 (40%), Gaps = 27/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L++ QV ++ I EV +D + +G + ++ A+ + V+ Sbjct: 421 RKLIKELDVP-VKQVLIEARIVEVTKDFAQDLGIRWGVSKPQHLSGTLAGANQLAQGVAP 479 Query: 242 G-------------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 ++ + D + L ALE ++ P Sbjct: 480 ADVTPFTDRLNLDLVAAPLTKANPATVGIALAQLGDNILLDLELSALESEGLAELISSPR 539 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L + Q A SG + Y+ S+S+GAT+V + L P + +I + ++ Sbjct: 540 LITANQQPALIDSGQEIPYQQ-STSSGATAVAFKKAVLSLKVIPQITPDNKILMDLKINQ 598 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +P+ ++ T V + +G TIVL G+ + D + +P ++P++G Sbjct: 599 DLALPNQTYNGVPAIATKEIQTNVLVSNGQTIVLGGIYQQDKSKTITRVPFFGQLPVVGN 658 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LF+N++ E+ I TP ++ Sbjct: 659 LFKNTQIGVHNDELLIFITPKII 681 >gi|262280702|ref|ZP_06058485.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] gi|262257602|gb|EEY76337.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] Length = 758 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 121/312 (38%), Gaps = 47/312 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 + + L+I QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 382 ESAIQQLDIR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440 Query: 241 -----------------------EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPT 276 G F+V + R ++ ++ AL+ T L+ P+ Sbjct: 441 AAGYLSGGSAGAASAIAGGANKGNGATFAVGNFENSRKAYGALIQALKANTKSNLLSTPS 500 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S +T +T +V D GV L P + G + L Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD++ ++GIP LS Sbjct: 561 EVEQEVSNVQTSKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVELSRQGIPGLSS 620 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 IP LG LFR+ + + + + P +V +D + R N+ Sbjct: 621 IPYLGRLFRSDSRSNTKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 665 Query: 451 IYGPKEASEVEG 462 +Y + A + G Sbjct: 666 LYSLQLAMDQNG 677 >gi|289164222|ref|YP_003454360.1| type IV pilus (Tfp) assembly protein PilQ [Legionella longbeachae NSW150] gi|288857395|emb|CBJ11223.1| type IV pilus (Tfp) assembly protein PilQ [Legionella longbeachae NSW150] Length = 701 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 107/263 (40%), Gaps = 27/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L++ QV ++ I EV +D + +G + ++ A+ + V+ Sbjct: 421 RKLIKELDVP-VKQVLIEARIVEVTKDFAQDLGIRWGVSKPQHLSGTLAGANQLAQGVAP 479 Query: 242 G-------------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 ++ + D + L ALE ++ P Sbjct: 480 ADVTPFTDRLNLDLVAAPLTKANPATVGIALAQLGDNILLDLELSALESEGLAELISSPR 539 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L + Q A SG + Y+ S+S+GAT+V + L P + +I + ++ Sbjct: 540 LITANQQPALIDSGQEIPYQQ-STSSGATAVAFKKAVLSLKVIPQITPDNKILMDLKINQ 598 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +P+ ++ T V + +G TIVL G+ + D + +P ++P++G Sbjct: 599 DLALPNQTYNGVPAIATKEIQTNVLVSNGQTIVLGGIYQQDKSKTITRVPFFGQLPVVGN 658 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LF+N++ E+ I TP ++ Sbjct: 659 LFKNTQIGVHNDELLIFITPKII 681 >gi|45657443|ref|YP_001529.1| general secretory pathway protein D [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294828092|ref|NP_712556.2| type II secretory pathway component protein D [Leptospira interrogans serovar Lai str. 56601] gi|45600682|gb|AAS70166.1| general secretory pathway protein D [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293385940|gb|AAN49574.2| type II secretory pathway component protein D [Leptospira interrogans serovar Lai str. 56601] Length = 596 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 103/263 (39%), Gaps = 19/263 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ +L+ A QV L+V I E+ L G G + G S + S Sbjct: 303 RKIIKVLDSA-RKQVLLEVLIVELTSSDLNDFGIDWRYKGEAFGQFNSGLSKEANIINSN 361 Query: 242 GGDFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G L FS +L A + L+ P + + Q A + G Sbjct: 362 GQVNPNINTLSGFSLGFLKAGSEQIIGILSANQGNENFNVLSAPQVLTVDNQEAEISVGQ 421 Query: 292 QHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 +T S + G G+ L FTP V +I L + E+ Sbjct: 422 DVPVRTQSRNAGTGGTNAVTVDNYEYRPTGIKLKFTPHVNKNNKITLELFQEIKNIAEIA 481 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 AG P++ R+ T++ + + +IV+ GL+ +D Q+ IP L IP LG LF+ + Sbjct: 482 LAGGNPTFNRREIKTSISIENTQSIVIGGLISNDKQKRIIKIPFLGDIPYLGHLFKRTTE 541 Query: 404 NREETEIFIAATPFLVKPVAMRD 426 ++T + + TP ++ D Sbjct: 542 KIKKTNLMVFITPHILDSRETAD 564 >gi|94500410|ref|ZP_01306942.1| type 4 fimbrial biogenesis protein PilQ [Oceanobacter sp. RED65] gi|94427445|gb|EAT12423.1| type 4 fimbrial biogenesis protein PilQ [Oceanobacter sp. RED65] Length = 696 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 111/271 (40%), Gaps = 33/271 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 ++ +N+L++ QV ++ I ++ + +G + S + G VS Sbjct: 427 RRAINILDVP-VKQVLIEARIVVASTNVGENLGIRWGGGYGVLDGSDNLTLGGGLDTVSR 485 Query: 241 ----------------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 F+ D + + L ALE + Sbjct: 486 FNDGITAGSPVRDISETDSVINFPIAAANASTFAFGLSTDEYVLDLELSALESDGKAEII 545 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 ++P + GQ+A +G + Y+ S+S GATS+ + + L TP + RI + + Sbjct: 546 SQPRVITADGQTARIQAGTEIPYEQASAS-GATSIVFKEAVLKLEATPQITPDDRILMDL 604 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 +++ +G +PS + +T V + +G TIVL G+ + + + P +P Sbjct: 605 --IINKDAVGEIFNSIPSIDTNELETQVLVNNGETIVLGGIFQSEDITQVDKTPFFGDLP 662 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA 423 ++G LFR + +++E+ I TP LVK V Sbjct: 663 VIGQLFRRTTRTEDKSELLIFITPRLVKDVI 693 >gi|50083568|ref|YP_045078.1| putative general secretion pathway protein [Acinetobacter sp. ADP1] gi|49529544|emb|CAG67256.1| putative general secretion pathway protein [Acinetobacter sp. ADP1] Length = 772 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 110/270 (40%), Gaps = 33/270 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 + + L++ +QV ++ I EV D Q+G Q ++ +SG ++ G S Sbjct: 383 EAAIQQLDVR-REQVLIEAAIIEVSGDDSDQLGIQWALGDLNSGVGLLSFSNVGASLASI 441 Query: 241 -----------------------EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPT 276 G F+V + R ++ ++ AL+ T L+ P+ Sbjct: 442 AAGYASTGTAGAAAAIASGTNSGNGATFAVGDFSNSRKAYGALIQALKSNTKSNVLSTPS 501 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIG 329 + + + A G + T S STG+T +V D GV L P + G + Sbjct: 502 IVTMDNEEAYIVVGQNVPFVTGSVSTGSTGTINPYTTVERKDVGVTLKVIPHIGENGTVR 561 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 L ++ EVS+ R T V G T+VL GL+ D+ ++GIP LS Sbjct: 562 LEVEQEVSDVQSSKGQATDLVTNKRAIKTAVLAEHGQTVVLGGLISDNTSLTRQGIPGLS 621 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG LFR + E+ + + P ++ Sbjct: 622 NIPYLGRLFRADSKSNEKRNLLVFIHPTII 651 >gi|330444859|ref|ZP_08308514.1| general secretion pathway protein D [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489169|dbj|GAA03011.1| general secretion pathway protein D [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 677 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 71/352 (20%), Positives = 131/352 (37%), Gaps = 53/352 (15%) Query: 127 LRRFIADSNIRV-EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ-SGRNQYANSSSKKV 184 L+ A+ + V + VS+ + T Q ++ E +S N S+ V Sbjct: 272 LKYAKAEDMVDVLKGVSENIQAANKSNTPQAAKSGSSKDEVMISAHPETNALIISAPSDV 331 Query: 185 MNLLNIAGED------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 MN L QV ++ I EV+ G Q + A GG Sbjct: 332 MNRLESIISQLDIRRAQVHIEAMIVEVQEGAGVDFGVQWGSQDGGVIQFGNSGAPIGGLL 391 Query: 239 VSE---------------------------------------GGDFSVKGVLDRFSFETV 259 ++ GG + + + Sbjct: 392 SAQEAAKDKTTTQNRTDPNTGAQLPPIVTTESGDLAPMAAFLGGVKGAAAAISMGDWTAL 451 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGV 314 + A++ + L+ P +T + Q A+ + G + T SS+ T+V D G+ Sbjct: 452 VTAVQANRNVNVLSTPNITVLDNQEANLSVGQEVPVTTGSSTGSNNDNPFTTVERKDVGI 511 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L TP + + ++I+ VS+ A D+ + R+ T+V + G I L GL+ Sbjct: 512 QLKVTPQINEGDSVQMKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLM 570 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++ + ++ +P+L IP+LGALFR++ E+T + + P +++ D Sbjct: 571 QEKTLESEQKVPILGDIPVLGALFRSTNDQTEKTNLMVFIRPTILRDGMSAD 622 >gi|89074487|ref|ZP_01160964.1| putative type II secretory pathway, component EpsD [Photobacterium sp. SKA34] gi|89049775|gb|EAR55325.1| putative type II secretory pathway, component EpsD [Photobacterium sp. SKA34] Length = 672 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 126/337 (37%), Gaps = 50/337 (14%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194 ++ VS+ + T Q SQ + + + N S+ VMN L Sbjct: 283 LKGVSENIQAANKSNTPQVSQSSKDEVMISAHDA-TNSLIISAPSDVMNKLESIISQLDI 341 Query: 195 ---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------- 241 QV ++ I EV+ G Q + A GG ++ Sbjct: 342 RRAQVHIEAMIVEVQEGDGVNFGVQFGSQDGGVIQFGNSGAPIGGLLSAQEAAKDRTKTE 401 Query: 242 ---------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 GG + + ++ A+++ + L+ Sbjct: 402 TRYDADGKPYSYETTESGDLAPMAAFLGGIKGAAAAITMGDWTALVTAIKQNRNVNVLST 461 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIG 329 P +T + Q A+ + G + T S + T+V D G+ L TP + + Sbjct: 462 PNVTVLDNQEANLSVGQEVPVTTGSQTGSNNDNPFTTVERKDVGIQLKVTPQINEGDSVQ 521 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++I+ VS+ A D+ + R+ T+V + G I L GL+++ + ++ +P+L Sbjct: 522 MKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQKVPILG 580 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IP+LGALFR++ E+T + + P +++ D Sbjct: 581 DIPVLGALFRSTNNQTEKTNLMVFIRPTILRDGMSAD 617 >gi|300918298|ref|ZP_07134902.1| general secretion pathway protein D [Escherichia coli MS 115-1] gi|300414559|gb|EFJ97869.1| general secretion pathway protein D [Escherichia coli MS 115-1] Length = 650 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 68/318 (21%), Positives = 120/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q A V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 325 TADQSAQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 383 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 384 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 443 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 444 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 503 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ +PLL Sbjct: 504 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 563 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 564 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYHSLSKEKYTRYRQEQQQRIDGKS 623 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 624 KALVGSEDLPVLDENTFN 641 >gi|39997126|ref|NP_953077.1| type IV pilus biogenesis protein PilQ [Geobacter sulfurreducens PCA] gi|39984016|gb|AAR35404.1| type IV pilus biogenesis protein PilQ [Geobacter sulfurreducens PCA] gi|298506139|gb|ADI84862.1| type IV pilus secretin lipoprotein PilQ [Geobacter sulfurreducens KN400] Length = 894 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 23/299 (7%) Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 +I V D V V++ + + + T + A + + ++ L++ E Sbjct: 604 DINFAAVGDIVSQFNAVKS--ERGTISQDARTNRVIVKDIEPALAEMRILLKNLDLP-EK 660 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGG-----------KFVSE 241 QV ++ I E + +G Q I + SG +S A FGG S Sbjct: 661 QVLIEARIVEATSTFTRDLGVQWGIHSNDSGADIIRSVDAGFGGIVTPPPASGFPAATSS 720 Query: 242 GGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 GG + + + L A A ++ ++ P + ++ ++A + G Y+T S+ Sbjct: 721 GGAVGISFAKMGSLQVDLRLSAAAVAGLVKIVSTPKVVTLNNKAAKISQGQSIPYQTTSA 780 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 T + + L TP + + G + ++I+ + G P ++A T + Sbjct: 781 E--GTKTEFVEAALTLEVTPHITADGSVSMKIKASNN----SAGTGSPPPINKKEATTEL 834 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T V+ G+ D G+P L IP+LG LF+++ N+ +TE+ I TP +V Sbjct: 835 LVKNGETTVIGGIYVDSDTDEDRGVPFLMDIPVLGWLFKSNTKNKTKTELLIFITPKIV 893 >gi|295096434|emb|CBK85524.1| general secretion pathway protein D [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 638 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 115/286 (40%), Gaps = 19/286 (6%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGG 236 +S +KV++ L+I QV ++ IAEV+ +G Q + G G + + Sbjct: 328 NSLEKVIDKLDIRRP-QVLVEAIIAEVQDGNGLDLGVQWTSKHGGVQFGATGLPISQIKN 386 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295 + + F ++ AL L+ P++ + + ASF G Sbjct: 387 GTMKGASFTGLATGFFNGDFGALVTALSTDGKNDILSTPSVVTLDNKEASFNVGQDVPVL 446 Query: 296 ---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPS 350 +T S SV G L P + I L+I+ EVS + P+ Sbjct: 447 SGSQTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDNSATEDSSLGPT 506 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+VL GL+++ +Q +PLL IP++G LFR + + + + Sbjct: 507 FNTRTINNEVMVHSGQTVVLGGLMENVTKQSVSKVPLLGDIPLVGQLFRYTSQDTSKRNL 566 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456 + +++ DD+YS K RV ++ +E Sbjct: 567 MVFIHTTVLRD---------DDNYSAASKEKYDQI-RVRQMQRVEE 602 >gi|104779612|ref|YP_606110.1| type IV pili biogenesis protein PilQ [Pseudomonas entomophila L48] gi|95108599|emb|CAK13293.1| putative type IV pili biogenesis protein PilQ [Pseudomonas entomophila L48] Length = 412 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 108/248 (43%), Gaps = 6/248 (2%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGG 236 ++++ L++ QV ++ I E D K +G + + G + D G Sbjct: 165 GEIRRLVAQLDVP-VRQVMIEARIVEANIDYEKALGVRWGGPLYGQDNRLGSELFVDLGV 223 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + V + + L A+E++ +++P + ++A G + Y+ Sbjct: 224 ERATSA--LGVGLLRSDVLLDLELSAMEKSGNGEIISQPRVVTADKETARILKGTEVPYQ 281 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 ++ +GATS++ + + L TP + G++ + ++ EP ++P R + Sbjct: 282 E-TTKSGATSISFREASLSLEVTPQITPDGKVIMEVRVTKDEPDFVNALNNVPPIRKNEV 340 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + V + +G TIV+ G+ + + +P +P +G LFR +++E+ + TP Sbjct: 341 NAKVRVTNGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTP 400 Query: 417 FLVKPVAM 424 ++ A+ Sbjct: 401 RIMSDQAI 408 >gi|126176299|ref|YP_001052448.1| type IV pilus secretin PilQ [Shewanella baltica OS155] gi|125999504|gb|ABN63579.1| type IV pilus secretin PilQ [Shewanella baltica OS155] Length = 683 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 25/260 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229 +++ +L+I QV ++ + V+ D+ + +G + +T S Sbjct: 422 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGI 480 Query: 230 -------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + F V + D + L ALE+ +A P +T + Sbjct: 481 IPTADQRLNVNLPSAASNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 540 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y S+S+GATSVT + L TP + R+ L ++ Sbjct: 541 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 599 Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V+ P+ ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR Sbjct: 600 TVDTPTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 659 Query: 400 NSRFNREETEIFIAATPFLV 419 N+ E E+ I TP +V Sbjct: 660 NTTDKNERQELLIFVTPKIV 679 >gi|148263871|ref|YP_001230577.1| type IV pilus secretin PilQ [Geobacter uraniireducens Rf4] gi|146397371|gb|ABQ26004.1| type IV pilus secretin PilQ [Geobacter uraniireducens Rf4] Length = 944 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 20/243 (8%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----FAADFGG---------- 236 + E QV ++ I E + ++ +G Q + S + F FGG Sbjct: 707 SPEKQVMIEARIVEAQTSFVRDLGVQWGLHYVDGSASVAGISRFDTGFGGVVTPPPTSGT 766 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 S + + L A A I+ ++ P + ++ + A + G Y+ Sbjct: 767 SGPGAAAGMSFGKLASNIQIDMRLSAAVTAEQIKIISSPRVVTLNNKPAKISQGASIPYQ 826 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 T S+ T + + L TP + S G IG++I+ + G P ++A Sbjct: 827 TTSAE--GTKTEFVEAALTLEVTPHITSDGSIGMKIKASNN----SAGTGSPPPINKKEA 880 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + + +G T V+ G+ D +G+P L IP+LG LF+++ N+ + E+ I TP Sbjct: 881 TTELLVKNGETTVIGGIYVDSETDNDKGVPFLQDIPLLGWLFKSNTKNKSKNELLIFITP 940 Query: 417 FLV 419 ++ Sbjct: 941 KII 943 >gi|85860072|ref|YP_462274.1| general secretion pathway protein D [Syntrophus aciditrophicus SB] gi|85723163|gb|ABC78106.1| general secretion pathway protein D [Syntrophus aciditrophicus SB] Length = 601 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 62/258 (24%), Positives = 109/258 (42%), Gaps = 29/258 (11%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEG------- 242 + V ++ I EV +G + ++ + SG + S GG G Sbjct: 312 SSRPMVYIEALILEVNIVKDFNLGTEWRAMHDAGSGGTGSLLFGSGGLGPPAGTYNILPD 371 Query: 243 ----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 G G + ++ A++ T I L++P L + + A Sbjct: 372 VTTPATYSSGFTFGILGTGITLGGITFQDIGAMIQAIKSDTDIHILSKPQLLTMDNEEAQ 431 Query: 287 FTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 G Y +T +++ +S D GV L TP + S G + ++I EVS+ Sbjct: 432 IHVGKNVPYATRKETTTTNLDYSSYEYRDVGVSLKITPHINSEGFVRMKINQEVSQVTED 491 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G +P+ R +TTV + T+V+ G++ D Q +PLL IP+LG LF++ Sbjct: 492 SPTG-LPTTNKRAVNTTVTIKDSETVVIGGMIGDSTQLGTYKVPLLGDIPVLGWLFKSRS 550 Query: 403 FNREETEIFIAATPFLVK 420 NRE+T +++ TP +++ Sbjct: 551 SNREKTNLYVFITPRVIR 568 >gi|153002584|ref|YP_001368265.1| type IV pilus secretin PilQ [Shewanella baltica OS185] gi|160877305|ref|YP_001556621.1| type IV pilus secretin PilQ [Shewanella baltica OS195] gi|151367202|gb|ABS10202.1| type IV pilus secretin PilQ [Shewanella baltica OS185] gi|160862827|gb|ABX51361.1| type IV pilus secretin PilQ [Shewanella baltica OS195] gi|315269510|gb|ADT96363.1| type IV pilus secretin PilQ [Shewanella baltica OS678] Length = 683 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 25/260 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229 +++ +L+I QV ++ + V+ D+ + +G + +T S Sbjct: 422 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGI 480 Query: 230 -------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + F V + D + L ALE+ +A P +T + Sbjct: 481 IPTPDQRLNVNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 540 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y S+S+GATSVT + L TP + R+ L ++ Sbjct: 541 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 599 Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V+ P+ ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR Sbjct: 600 TVDTPTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 659 Query: 400 NSRFNREETEIFIAATPFLV 419 N+ E E+ I TP +V Sbjct: 660 NTTDKNERQELLIFVTPKIV 679 >gi|239996578|ref|ZP_04717102.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonas macleodii ATCC 27126] Length = 590 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 106/261 (40%), Gaps = 24/261 (9%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----------- 229 ++K +N L+I QV ++ + V D+ +Q+G + + S Sbjct: 328 ARKTINALDIP-VKQVLIESRMVTVLDDVDEQLGVRWGFSDRQDDNGVSGSLEGADTIAG 386 Query: 230 ---------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + F + ++D + L ALE +A P +T Sbjct: 387 GIVPSIDNRLNVNLPVTSAAGSIGFQIASLVDGTILDLELSALESENKGEIIASPRITVA 446 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSE 338 + A G + Y +SS GATSV + L TP + RI L + + Sbjct: 447 NQHEAYIEQGTEIPYVQATSS-GATSVEFKKAVLSLKVTPHITPDNRIILDLVVTQDTRG 505 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + + G+ + ++ T V + +G TIVL G+ + +PL +P++GALF Sbjct: 506 ETVSTSTGEAVAIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGDLPVVGALF 565 Query: 399 RNSRFNREETEIFIAATPFLV 419 RNS +++ E+ I TP +V Sbjct: 566 RNSSQLQQKRELLIFVTPKIV 586 >gi|91791628|ref|YP_561279.1| type II and III secretion system protein [Shewanella denitrificans OS217] gi|91713630|gb|ABE53556.1| type II and III secretion system protein [Shewanella denitrificans OS217] Length = 683 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 114/261 (43%), Gaps = 27/261 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ +L+I + QV ++ + V+ D+ + +G + IT G + + G + ++ G Sbjct: 422 RLIEVLDIPIK-QVLIESRMVTVKDDVSEDLGIRWGITDQQ-GTKGTSGSLTGSQNIANG 479 Query: 243 G----------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 F V + D + L ALE+ +A P +T Sbjct: 480 VVPSIDDRLNVNLPAAASNHTSIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTS 539 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + ++A G + Y S+S+GATSVT + L TP + R+ L ++ Sbjct: 540 NQKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQG 598 Query: 341 IGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 V+ P+ ++ T V + +G TIVL G+ + ++ +P+L IP +G LF Sbjct: 599 KTVDTPTGPAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPILGDIPYVGFLF 658 Query: 399 RNSRFNREETEIFIAATPFLV 419 RN+ E E+ I TP +V Sbjct: 659 RNTTDKNERQELLIFVTPKIV 679 >gi|304412135|ref|ZP_07393744.1| type IV pilus secretin PilQ [Shewanella baltica OS183] gi|307306879|ref|ZP_07586619.1| type IV pilus secretin PilQ [Shewanella baltica BA175] gi|304349401|gb|EFM13810.1| type IV pilus secretin PilQ [Shewanella baltica OS183] gi|306910457|gb|EFN40887.1| type IV pilus secretin PilQ [Shewanella baltica BA175] Length = 683 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 25/260 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229 +++ +L+I QV ++ + V+ D+ + +G + +T S Sbjct: 422 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGI 480 Query: 230 -------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + F V + D + L ALE+ +A P +T + Sbjct: 481 IPTPDQRLNVNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 540 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y S+S+GATSVT + L TP + R+ L ++ Sbjct: 541 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 599 Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V+ P+ ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR Sbjct: 600 TVDTPTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 659 Query: 400 NSRFNREETEIFIAATPFLV 419 N+ E E+ I TP +V Sbjct: 660 NTTDKNERQELLIFVTPKIV 679 >gi|292489334|ref|YP_003532221.1| type II secretion system protein OutD [Erwinia amylovora CFBP1430] gi|292898442|ref|YP_003537811.1| type II secretion system protein [Erwinia amylovora ATCC 49946] gi|291198290|emb|CBJ45396.1| type II secretion system protein [Erwinia amylovora ATCC 49946] gi|291554768|emb|CBA22567.1| Type II secretion system protein outD [Erwinia amylovora CFBP1430] gi|312173499|emb|CBX81753.1| Type II secretion system protein outD [Erwinia amylovora ATCC BAA-2158] Length = 645 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 62/307 (20%), Positives = 125/307 (40%), Gaps = 25/307 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--------------KKVMNLLNIA 191 VL G+ IQD + S +S+ + ++ ++++N L+I+ Sbjct: 287 VLSGVSSNIQDKSESKSASPVAMSKDIVVKADTYTNSLIINAPPDVMGDLEEIINRLDIS 346 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGD--FS 246 QV ++ I EV+ +G Q + G+ S + ++ G ++E Sbjct: 347 -RAQVQVEAIIVEVQDADGLALGVQWFNKNGGGTQFPASDAPVSNLIGSTIAEALSKTNG 405 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + ++ + AL+ + LA P++ + A FT G T + +T Sbjct: 406 LAAGFYHGNWAGLFTALQTNSQNNILATPSIVTLDNMEAEFTVGQDVPILTGTQTTNTDG 465 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVE 361 SV G+ L P + + + I+ EVS + + ++ R V Sbjct: 466 VYNSVDRKSVGIKLKVKPQINKGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNAVL 525 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + SG T+V+ GLL ++ +P+L +IP++G LFR + + + + + P +++ Sbjct: 526 VESGKTVVVGGLLDTTHSNVESSVPVLGQIPLIGRLFRYTSDKKSKRNLMLFIRPTIIRQ 585 Query: 422 VAMRDLS 428 DL+ Sbjct: 586 QDKFDLT 592 >gi|217975149|ref|YP_002359900.1| type IV pilus secretin PilQ [Shewanella baltica OS223] gi|217500284|gb|ACK48477.1| type IV pilus secretin PilQ [Shewanella baltica OS223] Length = 683 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 25/260 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229 +++ +L+I QV ++ + V+ D+ + +G + +T S Sbjct: 422 RLVEVLDIPI-RQVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGI 480 Query: 230 -------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + F V + D + L ALE+ +A P +T + Sbjct: 481 IPTPDQRLNVNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITTSN 540 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A G + Y S+S+GATSVT + L TP + R+ L ++ Sbjct: 541 QKAAYIEQGVEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGK 599 Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V+ P+ ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR Sbjct: 600 TVDTPTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFR 659 Query: 400 NSRFNREETEIFIAATPFLV 419 N+ E E+ I TP +V Sbjct: 660 NTTDKNERQELLIFVTPKIV 679 >gi|330881978|gb|EGH16127.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. race 4] Length = 334 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 125/309 (40%), Gaps = 29/309 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------TGSSSG 225 ++V++ L+ QV ++ I EV D Q G Q +G ++G Sbjct: 5 REVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQTGNLNGSGGFGGVNLGGSGLNTG 63 Query: 226 PSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 S S G V G ++ G+ + + + AL+ L+ P L + ++ Sbjct: 64 GSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEA 123 Query: 285 ASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 AS G + T S TG +V + G+ L+ P + G + L I EV Sbjct: 124 ASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEV 183 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 S + R DT++ L G +VL GLL+D Q E +P LS+IP+LG Sbjct: 184 SNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGV 243 Query: 397 LFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 LFRN + +T + + P++++ R+++ + Y A+ N + Sbjct: 244 LFRNEARSTSKTNLMVFLRPYIIRDSGTGRNITL--NRYEFMRRAQGNLRPERNWMLPDM 301 Query: 456 EASEVEGQN 464 +A ++ Sbjct: 302 QAPQLPSAA 310 >gi|330839785|ref|YP_004414365.1| type II and III secretion system protein [Selenomonas sputigena ATCC 35185] gi|329747549|gb|AEC00906.1| type II and III secretion system protein [Selenomonas sputigena ATCC 35185] Length = 447 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 91/452 (20%), Positives = 185/452 (40%), Gaps = 50/452 (11%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M R ++ + + P+ A ++ +A V + I + + + L+ + Sbjct: 1 MGISPRVGAFFLAAWFAGALPAAASPLTLEVVDADVTALL-TSIARLSGLDLILDDSVKG 59 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDIL 115 ++ + ++DV +P +A + L + G A V+L+ + + Sbjct: 60 RISLSLKDV---EPEEA---------LMLISRAKGLAVQHEGKVLLVRAAKEAAPFYRMH 107 Query: 116 I----ERDIAHLEMTLRRFIADSNIRV---EMVSDTVVLH--GMVRTIQDS--QRAVELS 164 + D+ ++ + ++ I + + G+ RT + RA Sbjct: 108 VLPVHHADLDTAFAAVKLSLGEAGISAIDENKKNGKEDISEQGLYRTGERLLIDRATNAL 167 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + ++ + ++ V++ L++ E QV+L+ + + ++ K++G + Sbjct: 168 LFYGTEE-----EKARAEAVLHSLDVPTE-QVSLEARVVALEKNAAKELGVDWDWSPLPI 221 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAE 274 P + + G + G D V GV+ F + + AL LA Sbjct: 222 DPHGTSKS--GAEGSRRGIDGEVPGVIRFGRTPEGKPYEFYYRAKIAALITDGKANVLAR 279 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRI 332 P +T + G+ A GG ++ + + G++L +TP + G I R+ Sbjct: 280 PNITTLQGREAVINIGGSVPVPETQTTNSTVTTSITYKKAGIILRYTPRIHENGEITARV 339 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 TEVS PV V+A ++ R ADTTV L G T+V+ GL+ + ++ +PLL IP Sbjct: 340 HTEVSSPVY-VDALKAYKFQERSADTTVRLKDGETMVIGGLIGSEESRVFAKVPLLGDIP 398 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 ILG F++ R + ++EI I T +++ + Sbjct: 399 ILGTFFKSVRRTKTDSEIMIFLTAHILRDTSP 430 >gi|311280237|ref|YP_003942468.1| general secretion pathway protein D [Enterobacter cloacae SCF1] gi|308749432|gb|ADO49184.1| general secretion pathway protein D [Enterobacter cloacae SCF1] Length = 647 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 63/273 (23%), Positives = 107/273 (39%), Gaps = 20/273 (7%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 +S +KV++ L+I QV ++ IAEV+ +G Q + S G Sbjct: 328 NSLEKVIDKLDIR-RAQVLVEAIIAEVQDGSGLDVGVQWTSQ-HGGTQFTSTGLPIGQVK 385 Query: 239 VSEGGDFSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + G+ F F ++ AL L+ P++ + + ASF G Sbjct: 386 NGKNTGIGFNGLATGFFNGDFGALMTALSTDGKNDILSTPSVVTLDNKEASFNVGQDVPV 445 Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMP 349 +T S +V G L P + I L+I+ EVS A P Sbjct: 446 LSGSQTTSGDNVFNTVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDSNATEDASLGP 505 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R + V + SG T+VL GL++ + +Q +PLL IP++G LFR + + + Sbjct: 506 TFNTRTINNEVMVHSGQTVVLGGLIESNTKQSVSKVPLLGDIPLVGQLFRYTSQDTSKRN 565 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + + +++ DD YS Sbjct: 566 LMVFIHTTVLRD---------DDSYSAASKEHY 589 >gi|120553763|ref|YP_958114.1| type IV pilus secretin PilQ [Marinobacter aquaeolei VT8] gi|120323612|gb|ABM17927.1| type IV pilus secretin PilQ [Marinobacter aquaeolei VT8] Length = 704 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 105/260 (40%), Gaps = 31/260 (11%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-------------------------SSSGPSK 228 QV+++ I + ++ + +G + S + Sbjct: 448 RQVSIEARIVRAQTNVAEDLGVRWGGAAYNVDGDDVITVGGSLGTLQEARDAASGGSNTI 507 Query: 229 SFAADFG---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 SF G G F++ D F + L ALE +++P + Q+A Sbjct: 508 SFPGALGVDLGVSGDGASSFAIGWGSDDFLVDLELSALESDGRAEVVSQPRVVTADRQTA 567 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 S SG + Y+ +SS GAT++ + + L TP + +I + + V++ G Sbjct: 568 SIKSGEEIPYQEATSS-GATNIEFKEAVLSLEVTPQITPDDKIIMDL--VVNQDSRGEVT 624 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +PS + T V + +G T+VL G+ + ++ P L IP LG LF+ + Sbjct: 625 AGIPSINTNEVTTQVLVANGETVVLGGIFQSEVATQTTKTPFLGDIPYLGRLFKRTEHID 684 Query: 406 EETEIFIAATPFLVKPVAMR 425 E +E+ I TP ++K ++ Sbjct: 685 ERSELLIFITPKIIKNDILQ 704 >gi|332305113|ref|YP_004432964.1| type IV pilus secretin PilQ [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172442|gb|AEE21696.1| type IV pilus secretin PilQ [Glaciecola agarilytica 4H-3-7+YE-5] Length = 580 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 24/268 (8%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA- 232 Q + ++K+++ L+I QV ++ + VR + +Q+G + + +S + S Sbjct: 308 TQASIDEARKLISALDIP-VKQVLIESRMVTVRDNAGEQLGVRWGFSNNSGDTATSGTIE 366 Query: 233 -----------------DFGGKFVSEGGDFS--VKGVLDRFSFETVLHALERATAIRTLA 273 + S G V ++D + L ALE +A Sbjct: 367 GADTLSSGVVPSIDNRLNVNLPVTSPAGSIGIQVARLVDGTILDLELSALESENKGEVIA 426 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR-- 331 P +T + + A G + Y S+S+GATSV + L TP + RI L Sbjct: 427 SPRITVANQREAYIEQGTEIPY-VQSTSSGATSVEFKKAVLSLKVTPHITPDHRIILDLV 485 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + + + + G + ++ T V + +G TIVL G+ + +PLL I Sbjct: 486 VTQDTRGDTVNTSTGLAVAIDTQEISTQVLVNNGETIVLGGIFQQTSTDDVSQVPLLGDI 545 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P+LG LF+N++ E+ E+ I TP ++ Sbjct: 546 PVLGHLFKNTQTVNEKRELLIFVTPKIL 573 >gi|114571311|ref|YP_757991.1| general secretion pathway protein D [Maricaulis maris MCS10] gi|114341773|gb|ABI67053.1| general secretion pathway protein D [Maricaulis maris MCS10] Length = 686 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 68/332 (20%), Positives = 128/332 (38%), Gaps = 18/332 (5%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTVVLHGMVRTIQDS 157 ++ L ++ + L + A I D HG + Sbjct: 327 AGSERRLRYYVVRNTPASTLATQITAAFAGGQTGAGQLIEPRFQGDDA--HGEPSAPGEE 384 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGF 215 Q + + L+ + + + +++++L+ QV ++ TIAEVR + G Sbjct: 385 QSRLTIIPDELNNALIIRATDQEYREILDLVQRMDVMPPQVLIEATIAEVRLEDGLDFGV 444 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + + S + S + L AL T + L+ P Sbjct: 445 RWYFENAGSNETSSLQFSDSNTGSTAPVFPGFNYAFSGTDLTATLSALRSITDVTVLSAP 504 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRI 328 ++ + Q+A G + T ++++ +SV + GV+L TP + + G + Sbjct: 505 SIMVQNNQTAHLQVGDEVPIVTQTATSVTESNAPIVSSVELRETGVILQVTPRINASGMV 564 Query: 329 GLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L + EVS +G D P+ + + +TV + S TI L GL+++ + PL Sbjct: 565 VLEVNQEVSSVRPTTTSGIDSPTIQKLEFTSTVSVRSSNTIALGGLIRETTSDNESRTPL 624 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L IP +G LFRN + +E+ I TP ++ Sbjct: 625 LGDIPGVGNLFRNRAMTSQRSELVIFLTPRII 656 >gi|188532939|ref|YP_001906736.1| General secretion pathway protein D [Erwinia tasmaniensis Et1/99] gi|188027981|emb|CAO95838.1| General secretion pathway protein D [Erwinia tasmaniensis Et1/99] Length = 646 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 121/305 (39%), Gaps = 26/305 (8%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANS-----------SSKKVMNLLNIAGEDQ 195 + G ++ +S+ A ++ + + Y NS + ++N L+I+ Q Sbjct: 291 VSGSIQDKAESKTASPVAMSKDIVVKADTYTNSLIINAPPDVMGDLEDIINRLDIS-RAQ 349 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-------SEGGDFSVK 248 V ++ I EV+ +G Q G ++ AAD + + + Sbjct: 350 VQVEAIIVEVQDADGLALGVQW--FNQHGGGTQFPAADAPVSHLIGSTVAETLSKTNGLA 407 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---- 304 ++ + +AL+ + LA P++ + A FT G T S +T Sbjct: 408 AGFYHGNWAGLFNALQTNSLNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGVF 467 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELP 363 SV G+ L P + + + I+ EVS + + ++ R V + Sbjct: 468 NSVDRKSVGIKLKVKPQINEGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNAVLVQ 527 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SG T+V+ GLL ++ +PLL KIP +G LFR + + + + + P +++ Sbjct: 528 SGKTVVVGGLLDTTHSNVESSVPLLGKIPFIGGLFRYTSDKKSKRNLMLFIRPTIIRQQD 587 Query: 424 MRDLS 428 DL+ Sbjct: 588 SFDLT 592 >gi|260551051|ref|ZP_05825255.1| type II secretory pathway [Acinetobacter sp. RUH2624] gi|260405818|gb|EEW99306.1| type II secretory pathway [Acinetobacter sp. RUH2624] Length = 758 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 69/312 (22%), Positives = 115/312 (36%), Gaps = 47/312 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440 Query: 242 GGDFSVKGVLDRFS-------------------------FETVLHALERATAIRTLAEPT 276 + G S + ++ AL+ T L+ P+ Sbjct: 441 AAGYLSGGTAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S +T +T +V D GV L P + G + L Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGEGGTVRL 560 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD ++GIP LS Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 IP +G LFR+ + + + + P +V +D + R N+ Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 665 Query: 451 IYGPKEASEVEG 462 +Y + A + G Sbjct: 666 LYSLQLAMDKNG 677 >gi|190574660|ref|YP_001972505.1| putative general secretion pathway protein D [Stenotrophomonas maltophilia K279a] gi|190012582|emb|CAQ46210.1| putative general secretion pathway protein D [Stenotrophomonas maltophilia K279a] Length = 792 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 32/314 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------- 234 ++V++ L+ QV ++ I EV + ++G Q + + F Sbjct: 379 RRVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTTGGSGLNT 437 Query: 235 ------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G K G ++ GV + + + +AL+ L+ P L + Sbjct: 438 TARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSKGGANILSTPNLMTLDN 497 Query: 283 QSASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 ++AS G + + S+ ++ D G+ L P + G + L I Sbjct: 498 EAASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQ 557 Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 EVS N+ R DT+V L G +VL GLL+D + ++ +P L KIP+ Sbjct: 558 EVSSIDAQSANSTAGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPV 617 Query: 394 LGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 LGALFR+ R +T + + P +V+ P A + L+R D Y +A+A + Sbjct: 618 LGALFRSDTRKRAKTNLMVFLRPHVVREPAAGQRLTR--DRYDYMRNAQAGAQPAQSWAL 675 Query: 453 GPKEASEVEGQNYK 466 A ++ Q+ Sbjct: 676 PALSAPQLPPQDLS 689 >gi|34305612|gb|AAQ63613.1| GspD [Ralstonia solanacearum] Length = 709 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 73/306 (23%), Positives = 115/306 (37%), Gaps = 45/306 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V++ L+ A QV ++ I EV D Q+G Q + +FG Sbjct: 325 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 383 Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 G VS + +L AL Sbjct: 384 LNLGVVAATVGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 443 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319 ++ L+ P L + + A G T S S T + D G+ L Sbjct: 444 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVK 503 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G + ++I E S V G NA P+ VR +T V G IVL GLL+D+ Sbjct: 504 PQITEGGLVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNY 563 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q ++ +P L IPILGALFR+ R++T + + P++++ A + D+ Y+ Sbjct: 564 QDSEQKVPGLGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRYNYMR 622 Query: 439 DAKAFF 444 + F Sbjct: 623 QTQQGF 628 >gi|320180160|gb|EFW55099.1| General secretion pathway protein D [Shigella boydii ATCC 9905] Length = 654 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 70/337 (20%), Positives = 124/337 (36%), Gaps = 24/337 (7%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + D+ +T +Q V+ L+I QV ++ I EV+ Sbjct: 310 SAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 368 Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255 +G Q S +++G AA + GG S D FS Sbjct: 369 LGVQWSNKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 428 Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309 + +L AL LA P++ + + ASF G +T S +V Sbjct: 429 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 488 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G L TP V + L I+ EVS N+ P++ R V + +G T+V Sbjct: 489 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 548 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GLL D ++ +PLL IP++G LFR + R + + + P +++ + Sbjct: 549 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLS 608 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + + + + + G ++ ++ + Sbjct: 609 KEKYTRYRQEQQQRIDGKSKALVGSEDLPVLDENTFN 645 >gi|194439979|ref|ZP_03072038.1| general secretion pathway protein D [Escherichia coli 101-1] gi|307140008|ref|ZP_07499364.1| general secretory pathway component, cryptic [Escherichia coli H736] gi|331644021|ref|ZP_08345150.1| general secretion pathway protein D [Escherichia coli H736] gi|606259|gb|AAA58122.1| ORF_o654 [Escherichia coli str. K-12 substr. MG1655] gi|194421087|gb|EDX37115.1| general secretion pathway protein D [Escherichia coli 101-1] gi|315137900|dbj|BAJ45059.1| general secretion pathway protein D [Escherichia coli DH1] gi|323959524|gb|EGB55177.1| general secretion pathway protein D [Escherichia coli H489] gi|323970129|gb|EGB65403.1| general secretion pathway protein D [Escherichia coli TA007] gi|331036315|gb|EGI08541.1| general secretion pathway protein D [Escherichia coli H736] gi|332345271|gb|AEE58605.1| general secretion pathway protein GspD [Escherichia coli UMNK88] Length = 654 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 329 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 387 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 388 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 447 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 448 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 507 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ +PLL Sbjct: 508 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 567 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 568 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 627 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 628 KALVGSEDLPVLDENTFN 645 >gi|318607800|emb|CBY29298.1| type IV pilus biogenesis protein PilQ [Yersinia enterocolitica subsp. palearctica Y11] Length = 416 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L+++G + + + S +F + + F+V + Sbjct: 185 QQVQLAAHIVTMSRENLQELGVRWGMGDTKPTSSLRMSNFNVNLPLPNSAISAGFNVARI 244 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + LE+ I +A P L Q+AS G Y GAT++ Sbjct: 245 GGRLLELELSA-LEQENQIDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFK 303 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + GD + ++ T + + G TI Sbjct: 304 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETI 363 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + +P+L+ IP LG LF+ + E+ I TP L+ Sbjct: 364 VLGGIFQQKSSHGLNKVPILADIPWLGGLFKQDARQQSRRELVIFITPRLI 414 >gi|225024352|ref|ZP_03713544.1| hypothetical protein EIKCOROL_01227 [Eikenella corrodens ATCC 23834] gi|224942849|gb|EEG24058.1| hypothetical protein EIKCOROL_01227 [Eikenella corrodens ATCC 23834] Length = 707 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 108/260 (41%), Gaps = 16/260 (6%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------- 220 NQ ++++ L++ QV ++ I E + +G + Sbjct: 441 NQNVIKEFERLIEQLDVP-ARQVMIEARIVEANDGFSRALGVKFGYNKTSGSTRIGSGLG 499 Query: 221 -GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G ++G + S A + +S ++ L + L A++ + ++ P + Sbjct: 500 SGGANGNTFSIAPNVNLPAISATSSITIVRALSSGALGLELTAMQEQNRGKIISSPRVLT 559 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + A+ +G + Y+ SSS ++ + + + L TP + G + + I+ Sbjct: 560 QDRKEATIKAGREIPYQEASSSGATST-SFKEAVLGLTVTPQITPDGNVIMDIKLNKDSV 618 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + P ++ T + GGTI+L G+ +++ + +PLL IP++G LFR Sbjct: 619 DENCSVLGTPCINTKELVTRAMVEDGGTIILGGIYEEENSNSQYKVPLLGDIPVVGNLFR 678 Query: 400 NSRFNREETEIFIAATPFLV 419 +R N + E+ I TP ++ Sbjct: 679 GTRRNNSKNELLIFITPRIM 698 >gi|325529100|gb|EGD06093.1| putative secretion type II protein [Burkholderia sp. TJI49] Length = 608 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 77/435 (17%), Positives = 166/435 (38%), Gaps = 64/435 (14%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK-- 76 ++ S+ + P + A + + + + +++ ++ + + + V + + Sbjct: 158 ASSSIMRTPVSLQFRDANVRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVQNASLQD 214 Query: 77 -ADVVVHSPRTMYLFGKNVGQANVILIGHD--GKQMLNLDILI------ERDIAHLEMTL 127 D+++ + K AN + I K++ ++ + D ++ L Sbjct: 215 TVDMILLQNQ----LDKKQMNANTLFIYPATPAKELEYQELKVRTFQLSNVDAKQVQSLL 270 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + + ++ ++TV + G I+ ++ + + Sbjct: 271 KSLLKVKEAVIDEHANTVTIRGTPDMIKVAEEMIAAQD---------------------- 308 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 E +V L+V + EV D + Q+G + + S PS A +G +V Sbjct: 309 ---LPEPEVMLEVEVLEVSHDRMSQLGINWPNSFTVSTPSS--ADTWGVLHHLPINALNV 363 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---- 303 G+ F+ T LA P + A + + A G + + SS+ Sbjct: 364 SGLSATADFKL------TDTDANLLASPRIRARNKEKARIMIGDKVPVISSSSTPSTSGP 417 Query: 304 --ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR-------VR 354 + D G+ L P V G +G+++ EVS +++G+ R Sbjct: 418 SFTQMIQYLDVGIKLEVEPQVYRDGDVGIKLNLEVSNITNTISSGNSQGLSSLAYQIGTR 477 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 A T++ L G T ++ GL+ D+ ++ +P L ++P+LG LF + + ++TEI + Sbjct: 478 SASTSLRLRDGETQIMGGLISDEDRRNANKVPGLGQLPVLGRLFSDHGGDHKKTEIVLQI 537 Query: 415 TPFLVKPVAMRDLSR 429 TP +V+P D Sbjct: 538 TPHIVRPQVAADADT 552 >gi|227822850|ref|YP_002826822.1| general secretion pathway protein D, GspD [Sinorhizobium fredii NGR234] gi|227341851|gb|ACP26069.1| general secretion pathway protein D, GspD [Sinorhizobium fredii NGR234] Length = 692 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 78/352 (22%), Positives = 143/352 (40%), Gaps = 20/352 (5%) Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 +V+ G G + ++ D+ + T+ +EM + V Sbjct: 335 SVLATGQAGGGTVVRQSVVAPDL--VAETVAA--GGEGAPMEMPPEAAVEAASAPVSSVP 390 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 ++ L S + ++++ L++ QV L+ IAEV + + G + Sbjct: 391 SVVADIENNALLISTTAR-EYQRIEQILRQLDVL-PTQVFLEAVIAEVSLNDELKFGLRW 448 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 +S S A G +++ + L AL T ++ ++ P L Sbjct: 449 YFEHNSDAFGLSDLASGAVAATFPGFNWTHLA----GDAQIALQALSSVTNVKVISSPNL 504 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGL 330 I+ Q A G Q T +S++ + SV D G++L TP + S GR+ L Sbjct: 505 MVINNQQAKLQVGDQVPTVTQTSTSTSSADAAIVNSVELKDTGIILAVTPRINSSGRVML 564 Query: 331 RIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 IQ EVS V +G D P+ + RK T V + G ++ L GL+++ ++ +P+L Sbjct: 565 DIQQEVSNVVETTTSGIDSPTIQQRKISTRVVVNDGESLALGGLIQEKKSLGQKKMPVLG 624 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 IP+ G F++ TE+ I P +V+ V ++ + D + + D Sbjct: 625 DIPLFGNAFKSKTDGINRTELIIFIRPRIVRDV--QEARQVTDEFRQQFDFD 674 >gi|254038486|ref|ZP_04872542.1| general secretion pathway protein D [Escherichia sp. 1_1_43] gi|226838992|gb|EEH71015.1| general secretion pathway protein D [Escherichia sp. 1_1_43] Length = 654 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 329 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 387 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 388 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 447 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 448 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 507 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ +PLL Sbjct: 508 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 567 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 568 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 627 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 628 KALVGSEDLPVLDENTFN 645 >gi|170018439|ref|YP_001723393.1| general secretion pathway protein D [Escherichia coli ATCC 8739] gi|188495544|ref|ZP_03002814.1| general secretion pathway protein D [Escherichia coli 53638] gi|169753367|gb|ACA76066.1| general secretion pathway protein D [Escherichia coli ATCC 8739] gi|188490743|gb|EDU65846.1| general secretion pathway protein D [Escherichia coli 53638] Length = 654 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 329 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 387 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 388 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 447 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 448 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 507 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ +PLL Sbjct: 508 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 567 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 568 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 627 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 628 KALVGSEDLPVLDENTFN 645 >gi|322418906|ref|YP_004198129.1| type IV pilus secretin PilQ [Geobacter sp. M18] gi|320125293|gb|ADW12853.1| type IV pilus secretin PilQ [Geobacter sp. M18] Length = 922 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 104/243 (42%), Gaps = 20/243 (8%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGD-- 244 A E QV ++ I E + +G Q +++ S S S FGG + G Sbjct: 685 APEKQVMIEARIVEATSTFTRDLGVQWALSYKDSSASIANINSAETTFGGVVSTAGPGTS 744 Query: 245 --------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 S + + + A ++ ++ P + ++ ++A + G Y+ Sbjct: 745 GSGGLGLGMSFGKLTSNVQLDMRIAAAATIGQVKIISTPKVVTLNNKAAKISQGQSIPYQ 804 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 T S+ T + + L TP + + G + ++I+ + P G P ++A Sbjct: 805 TTSAE--GTKTEFVEAALTLEVTPHITADGSVSMKIKASNNSPGTGTP----PPINKKEA 858 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + + +G T V+ G+ D + G+P L+ IP+LG LF+++ + +TE+ I TP Sbjct: 859 TTELVVSNGDTTVIGGIYVDSDTESDTGVPFLADIPLLGWLFKSNTKQKTKTELLIFITP 918 Query: 417 FLV 419 +V Sbjct: 919 KIV 921 >gi|300702677|ref|YP_003744277.1| general secretory pathway protein d, type II secretion system [Ralstonia solanacearum CFBP2957] gi|299070338|emb|CBJ41633.1| General Secretory Pathway protein D, type II secretion system [Ralstonia solanacearum CFBP2957] Length = 809 Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats. Identities = 73/306 (23%), Positives = 115/306 (37%), Gaps = 45/306 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V++ L+ A QV ++ I EV D Q+G Q + +FG Sbjct: 425 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 483 Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 G VS + +L AL Sbjct: 484 LNLGVVAATVGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 543 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319 ++ L+ P L + + A G T S S T + D G+ L Sbjct: 544 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVK 603 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G + ++I E S V G NA P+ VR +T V G IVL GLL+D+ Sbjct: 604 PQITDGGLVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNY 663 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q ++ +P L IPILGALFR+ R++T + + P++++ A + D+ Y+ Sbjct: 664 QDSEQKVPGLGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRYNYMR 722 Query: 439 DAKAFF 444 + F Sbjct: 723 QTQQGF 728 >gi|399792|sp|P31700|GSPD1_ERWCH RecName: Full=General secretion pathway protein D; AltName: Full=Pectic enzymes secretion protein outD; Flags: Precursor gi|148434|gb|AAA24831.1| secretory component [Erwinia chrysanthemi] Length = 712 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 72/361 (19%), Positives = 135/361 (37%), Gaps = 42/361 (11%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 T+V+ G T++ + L T R+ ++V+N L+I QV + Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITRPPDIMRDL------EQVINQLDIRRP-QVLV 402 Query: 199 KVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFA----------ADFGGKFVSEG 242 + IAE++ +G Q + +++G S A + S Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAMIGTDQFRSDGTLTTAYASAL 462 Query: 243 GDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 +F+ + R ++ +L AL LA P++ + A+F G + T S + Sbjct: 463 SNFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522 Query: 302 TGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYR 352 T +V G+ L P + + L+I+ EVS G N+ ++ Sbjct: 523 TVGSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNGSSNSSLGVTFN 582 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + V + + T+V+ GLL + +PLL IP LG+LFR+ + + + Sbjct: 583 TRTVNNAVMVTNRETVVVGGLLDKTAIETNNKVPLLGDIPWLGSLFRSKTQTMSKRNLML 642 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 P +++ Y +K FN + + S ++ + + G Sbjct: 643 FLRPTIIRDP---------QQYQQASISKYNSFNNEQQQQRGQGNSVLDNNTLRLSGGNT 693 Query: 473 Y 473 Y Sbjct: 694 Y 694 >gi|169634604|ref|YP_001708340.1| putative general secretion pathway protein [Acinetobacter baumannii SDF] gi|260556356|ref|ZP_05828575.1| general secretion pathway protein D [Acinetobacter baumannii ATCC 19606] gi|169153396|emb|CAP02525.1| putative general secretion pathway protein [Acinetobacter baumannii] gi|260410411|gb|EEX03710.1| general secretion pathway protein D [Acinetobacter baumannii ATCC 19606] Length = 756 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 70/310 (22%), Positives = 116/310 (37%), Gaps = 45/310 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV Q+G Q ++ +SG + G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGKDADQLGVQWALGDINSGIGLINFTNAGSSLASL 440 Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278 + G S + ++ AL+ TA L+ P++ Sbjct: 441 AAGYLTGGAAGLGSAIGAGSSIALGKYKEGADGSRQLYGALIQALKENTASNLLSTPSIV 500 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + A G + T S +T +T +V D GV L P + G + L I Sbjct: 501 TMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGENGTVRLEI 560 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + EVS R T V G T+VL GL+ DD++ ++GIP LS IP Sbjct: 561 EQEVSNVQASKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVEFNRQGIPGLSSIP 620 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 LG LFR+ + + + + P +V +D + R N++Y Sbjct: 621 YLGRLFRSDTRSNTKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQLY 665 Query: 453 GPKEASEVEG 462 + A + G Sbjct: 666 SLQLAMDKNG 675 >gi|71279149|ref|YP_267229.1| type IV pilus biogenesis protein PilQ [Colwellia psychrerythraea 34H] gi|71144889|gb|AAZ25362.1| type IV pilus biogenesis protein PilQ [Colwellia psychrerythraea 34H] Length = 706 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 116/267 (43%), Gaps = 32/267 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFGG 236 K+++ +L++ QV ++ + V+ ++ +++G + +T + +SG + ++ G Sbjct: 439 KRMITILDVP-VRQVVIEARMVTVKDNMNEELGIRWGVTNTDGEFATSGSIEGASSANGT 497 Query: 237 KFVSEGG------------------------DFSVKGVLDRFSFETVLHALERATAIRTL 272 + V+ G F V + + + L ALE+ + Sbjct: 498 RGVTTPGVGQVPTIGDGLNVNLPVANAAGTIAFQVARLANGTILDLELSALEKENKGEVI 557 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A P +T + + A G + Y+ +SS GAT+ + L TP + +I L + Sbjct: 558 ASPRITTANQKEAYIEQGVEIPYQEAASS-GATATQFKKAVLSLTVTPHITPDDKIILDL 616 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + +G P+ ++ T V + +G TIVL G+ + I IP+L IP Sbjct: 617 VVTQDTIS-DITSGFAPAIDTQRIGTQVLVNNGETIVLGGIYQQAIISTVSKIPILGDIP 675 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 LG LFRNS E+ E+ I TP +V Sbjct: 676 YLGWLFRNSSQLNEKKELLIFVTPRIV 702 >gi|293412744|ref|ZP_06655412.1| general secretion pathway protein D [Escherichia coli B354] gi|291468391|gb|EFF10884.1| general secretion pathway protein D [Escherichia coli B354] Length = 650 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 325 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 383 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 384 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 443 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 444 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 503 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ +PLL Sbjct: 504 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 563 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 564 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 623 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 624 KALVGSEDLPVLDENTFN 641 >gi|301021125|ref|ZP_07185165.1| general secretion pathway protein D [Escherichia coli MS 196-1] gi|299881655|gb|EFI89866.1| general secretion pathway protein D [Escherichia coli MS 196-1] Length = 654 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 329 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 387 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 388 LPIFNAAQGVADYKKNGGLTSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 447 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 448 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 507 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ +PLL Sbjct: 508 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 567 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 568 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 627 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 628 KALVGSEDLPVLDENTFN 645 >gi|117619719|ref|YP_857681.1| type IV pilus secretin PilQ [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561126|gb|ABK38074.1| type IV pilus secretin PilQ [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 733 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 113/270 (41%), Gaps = 31/270 (11%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---------S 229 S+ K+++++L+I QV ++ + + + +G + +T + + S Sbjct: 462 SNIKRMLDILDIP-VKQVVIEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGTIEGNDS 520 Query: 230 FAADFGGKFVSEGG------------------DFSVKGVLDRFSFETVLHALERATAIRT 271 + GG ++ G F V + D + L ALE+ + Sbjct: 521 SGNNNGGSTITRPGVDDRLNVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEI 580 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P +T + + A G + Y SSS+GATSVT + L TP + R+ L Sbjct: 581 IASPRVTTANQKPALIEQGTEIPYVE-SSSSGATSVTFKKAVLSLKVTPQITPDNRVILD 639 Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + GD S + T V + +G T+VL G+ + I+ +PLL Sbjct: 640 LTVTQDTKGETVPTGTGDAVSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLG 699 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG LFR + ++ E+ I TP +V Sbjct: 700 DIPGLGVLFRKTTSENKKRELLIFVTPKIV 729 >gi|122091112|emb|CAL13995.1| putative membrane transport protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 371 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L+++G + + + S F + + F+V + Sbjct: 140 QQVQLAAHIVTMSRENLQELGVRWGMGDTKPTASLRMSDFNVNLPLPNSAVSAGFNVARI 199 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + E+ + +A P L Q+AS G Y GAT++ Sbjct: 200 GGRLLELELSAL-EQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFK 258 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + GD + ++ T + + G TI Sbjct: 259 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETI 318 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + Q +PLL+ IP LG LF+ + E+ I TP L+ Sbjct: 319 VLGGIFQQKSSQGVNKVPLLADIPWLGGLFKQDTQQQSRRELVIFITPKLI 369 >gi|71733584|ref|YP_275230.1| general secretion pathway protein GspD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554137|gb|AAZ33348.1| general secretion pathway protein GspD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 759 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 117/308 (37%), Gaps = 21/308 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206 G + + ++ S + + K++ + + QV ++ I EV Sbjct: 439 GANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 498 Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258 +G Q + +SG + + G + G ++ F + + Sbjct: 499 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 558 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312 L ALE + L+ P+L ++ Q A G S++T +SV Sbjct: 559 ALRALETNGRTQILSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 618 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIV 369 GV+L P + G + + IQ +VS N D P R T V SG T++ Sbjct: 619 GVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAQSGQTVL 678 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + + Sbjct: 679 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQ 736 Query: 430 PDDHYSVE 437 D Y + Sbjct: 737 VTDDYRQQ 744 >gi|320327874|gb|EFW83879.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. race 4] Length = 775 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 117/308 (37%), Gaps = 21/308 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206 G + + ++ S + + K++ + + QV ++ I EV Sbjct: 455 GANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 514 Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258 +G Q + +SG + + G + G ++ F + + Sbjct: 515 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 574 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312 L ALE + L+ P+L ++ Q A G S++T +SV Sbjct: 575 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 634 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIV 369 GV+L P + G + + IQ +VS N D P R T V SG T++ Sbjct: 635 GVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAKSGQTVL 694 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + + Sbjct: 695 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQ 752 Query: 430 PDDHYSVE 437 D Y + Sbjct: 753 VTDDYRQQ 760 >gi|94312323|ref|YP_585533.1| type II and III secretion system protein [Cupriavidus metallidurans CH34] gi|93356175|gb|ABF10264.1| general secretory pathway component, cryptic [Cupriavidus metallidurans CH34] Length = 783 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 75/333 (22%), Positives = 127/333 (38%), Gaps = 46/333 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236 + V++ L+ A QV ++ I EV + Q+G Q +S G + FA G Sbjct: 414 RGVIDDLD-ARRAQVYIESMIVEVSGTLDSQLGIQWQGLINSGGNTVGFAGTNFGTGGQN 472 Query: 237 -----------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 V + G ++ + +LHAL + T++ L+ Sbjct: 473 IINLTAAAALYNQNKTAGLAAISGLVPDVGGLNLGVINKAIGLGALLHALGQNTSVNLLS 532 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVT------THDYGVVLHFTPTVLSP 325 P L + + A G T S + +TSVT D G+ L P + Sbjct: 533 TPNLITLENEEAKILIGQNIPITTGSYAQTGSSTSVTPFQTFDRKDVGITLRVRPQISEG 592 Query: 326 GRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G + ++I E S+ G P+ VR +T V + G IVL GL++D+ + Sbjct: 593 GLVKMQIYQESSQVAPGTLTNPQGPTTNVRSIETNVLVDDGQIIVLGGLIEDNYGDNVQK 652 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +PLL IP LG+LFR R +T + + P++++ D D + + + F Sbjct: 653 VPLLGDIPYLGSLFRYENKTRSKTNLLVFLRPYVMRTTTATDRLTQDRYDFIRGQQQNFV 712 Query: 445 FNRV------NKIYGPKEASEVE--GQNYKGAI 469 + + P +A Y G + Sbjct: 713 SPNMVVRELNTPVLPPADAPTAPFVDPRYNGPV 745 >gi|323934477|gb|EGB30885.1| general secretion pathway protein D [Escherichia coli E1520] Length = 654 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 329 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 387 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 388 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 447 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 448 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 507 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ +PLL Sbjct: 508 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 567 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 568 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 627 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 628 KALVGSEDLPVLDENTFN 645 >gi|209696322|ref|YP_002264253.1| general secretion pathway protein D [Aliivibrio salmonicida LFI1238] gi|208010276|emb|CAQ80608.1| general secretion pathway protein D [Aliivibrio salmonicida LFI1238] Length = 675 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 62/291 (21%), Positives = 110/291 (37%), Gaps = 46/291 (15%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA- 231 + K V+ L+I QV ++ I E+ +G Q I S++G S Sbjct: 325 AVKDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLKTGAMIQYSNTGASIGGTM 383 Query: 232 -------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 D+G + GG + + ++ Sbjct: 384 VGLEEAKDSTTTTAVYDSDDNFQRNETTTEEGDYGALASALGGVQGAAVSIMMGDWTALI 443 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315 A+ + L+ P++T + ASF G + T S+S +V + G+ Sbjct: 444 TAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTSGSNNENPFQTVERKEVGIK 503 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L P + + L I+ EVS V+G N + R+ T+V + G +VL GL+ Sbjct: 504 LKVVPQINEGNSVRLDIEQEVSN-VLGANGAVDVRFAKRQLSTSVMVEDGKMLVLGGLID 562 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + + +P L IPILG LF+++ E+ + I P +++ D Sbjct: 563 ERAMESESKVPFLGDIPILGYLFKSTSTQVEKKNLMIFIKPTIIRDGMTSD 613 >gi|255320952|ref|ZP_05362125.1| general secretion pathway protein D [Acinetobacter radioresistens SK82] gi|262379956|ref|ZP_06073111.1| general secretion pathway protein D [Acinetobacter radioresistens SH164] gi|255301916|gb|EET81160.1| general secretion pathway protein D [Acinetobacter radioresistens SK82] gi|262298150|gb|EEY86064.1| general secretion pathway protein D [Acinetobacter radioresistens SH164] Length = 751 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 113/311 (36%), Gaps = 46/311 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L+I QV ++ I EV D Q+G Q ++ SSG + G S Sbjct: 377 ESAIQQLDIR-RQQVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLVNFTNVGSSLASL 435 Query: 242 GGDFSVKGVL------------------------DRFSFETVLHALERATAIRTLAEPTL 277 + G R + ++ AL+ T L+ P++ Sbjct: 436 AAGYLAGGSALANAASNLRGSSLLLGDYREGADGSRRLYGALIQALKDNTKSNLLSTPSI 495 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + A G + T S +T A T+V D GV L P + G + L Sbjct: 496 VTMDNEEAYIVVGQNVPFVTGSVTTNANGVNPYTTVERKDVGVTLKVIPHIGENGTVRLE 555 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EVS R T V G T+VL GL+ D+ ++ +P L I Sbjct: 556 VEQEVSNVQPNKGQATDLVTSKRAIKTAVLAEHGQTVVLGGLISDNSIYSRQAVPGLGAI 615 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P +G LFR+ + E+ + + P +V D + R +++ Sbjct: 616 PGIGRLFRSDSNSNEKRNLLVFIHPTIV---------------GDASDVRRLTQRRYDQL 660 Query: 452 YGPKEASEVEG 462 Y + A + +G Sbjct: 661 YSLQLAMDKDG 671 >gi|88861068|ref|ZP_01135703.1| General secretion pathway protein D [Pseudoalteromonas tunicata D2] gi|18643169|gb|AAL76242.1|AF441248_2 WmpD [Pseudoalteromonas tunicata] gi|88816996|gb|EAR26816.1| General secretion pathway protein D [Pseudoalteromonas tunicata D2] Length = 689 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 118/308 (38%), Gaps = 48/308 (15%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFA 231 S + V+ L++ QV ++ I EV +GFQ ++ P S Sbjct: 339 SLEGVIAKLDVR-RAQVLVEAIIVEVFEGDGVNLGFQWINKQGGMLQFNNGTTVPVGSLG 397 Query: 232 -------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 D GG + R + +L Sbjct: 398 VAGELARDKTIKKTVLGTNEGSANQYEETKEGDLTALASLLGGVNGLALGFARGDWGAIL 457 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315 A+ T LA P++T + + AS G + T S + +V + G+ Sbjct: 458 QAVSTDTNSNILATPSVTTMDNEEASMIVGQEVPIITGSQTGNNNTNPFQTVERQEVGIK 517 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + + L I+ EVS V G A D+ + R+ TTV G +VL GL+ Sbjct: 518 LKVTPQINDGSAVQLTIEQEVS-SVSGATAVDI-TINKREVTTTVLADDGAMVVLGGLID 575 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY 434 +D+Q+ +PLL +PI+G LF+++ NR + + I P +++ A M LS +Y Sbjct: 576 EDVQESVSKVPLLGDLPIIGHLFKSTSTNRRKRNLLIFIRPTIIRDSATMNQLSNSKYNY 635 Query: 435 SVEDDAKA 442 + K Sbjct: 636 IRTEQQKQ 643 >gi|306816332|ref|ZP_07450470.1| general secretory pathway component, cryptic [Escherichia coli NC101] gi|305850728|gb|EFM51185.1| general secretory pathway component, cryptic [Escherichia coli NC101] Length = 654 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 69/337 (20%), Positives = 123/337 (36%), Gaps = 24/337 (7%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + D+ +T +Q V+ L+I QV ++ I EV+ Sbjct: 310 SAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 368 Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255 +G Q + +++G AA + GG S D FS Sbjct: 369 LGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 428 Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309 + +L AL LA P++ + + ASF G +T S +V Sbjct: 429 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 488 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G L TP V + L I+ EVS N+ P++ R V + +G T+V Sbjct: 489 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 548 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GLL D ++ +PLL IP++G LFR + R + + + P +++ + Sbjct: 549 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLS 608 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + + + + + G ++ + + Sbjct: 609 KEKYTRYRQEQQLRIDGKSKALVGSEDLPVLNENTFN 645 >gi|77919728|ref|YP_357543.1| type IV pilus biogenesis protein PilQ [Pelobacter carbinolicus DSM 2380] gi|77545811|gb|ABA89373.1| type IV pilus biogenesis protein PilQ [Pelobacter carbinolicus DSM 2380] Length = 874 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 21/256 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD----FGGK 237 K+++ LL+ QV ++ I E + +G I+ + S D GG Sbjct: 623 KQLVRLLDTP-VRQVLIEARIVEASATFSRDLGVNWGISYQHNPGSDVEGNDASIGMGGT 681 Query: 238 FVS-------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 V G F GV D+ + L ALE++ R ++ P ++ ++G+ Sbjct: 682 LVGIPVSPGEVSSGIVSGLTFGQVGV-DKTVLDLRLAALEQSGHGRIVSTPRVSTLNGEE 740 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A G + Y +VS T + L TP + G + L I+ + Sbjct: 741 AEVAQGTEIPYLSVSDD--GTKTEFKKAELSLKVTPEINPDGSVILEIEAKNDSRGANTG 798 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 + P+ ++A T V + G T V+ G+ D + G+P L +PILG LF++ + Sbjct: 799 LSEAPAIDTKRATTKVLVKDGETTVIGGIFIQDKSESDSGVPWLMNVPILGHLFKSKSVS 858 Query: 405 REETEIFIAATPFLVK 420 E E+ + TP ++ Sbjct: 859 EERRELLVFITPRILD 874 >gi|229590685|ref|YP_002872804.1| general secretion pathway protein D/Q [Pseudomonas fluorescens SBW25] gi|229362551|emb|CAY49458.1| general secretion pathway protein D/Q [Pseudomonas fluorescens SBW25] Length = 788 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 81/358 (22%), Positives = 135/358 (37%), Gaps = 60/358 (16%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--------------KKVMNLLNIAGE 193 G + Q +A + S F + Q +++ ++V+++L+ Sbjct: 410 SGGNSSSQAGAQATDQSVAFSAGGVTIQADATTNTLLISAPEPLYRNLREVIDMLDQR-R 468 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---------- 243 QV ++ I EV D + G Q +G +G + GG + GG Sbjct: 469 AQVVIESLIVEVGEDDANEFGVQWQ-SGDLAGKGVIGGTNLGGSGLQTGGLTSIDALPGG 527 Query: 244 --------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 ++ GV + + + AL+ L+ P L + ++AS G + Sbjct: 528 LSVGYLSGTVNIPGVGNVMDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPF 587 Query: 296 KTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVN 344 + S TG +VT + G+ L+ P + G + L I EVS Sbjct: 588 VSGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQEVSSIDERASSSA 647 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 R DT++ L G +VL GLL+D Q E +P LS IP LGALFRN R Sbjct: 648 TSAGVVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNEAVPWLSSIPGLGALFRNERRA 707 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 +T + + P++++ A +A NR + I + A + E Sbjct: 708 TTKTNLMVFLRPYIIRDSAG---------------GRAITLNRYDFIRRAQGALQPER 750 >gi|299771842|ref|YP_003733868.1| general secretion pathway protein D [Acinetobacter sp. DR1] gi|298701930|gb|ADI92495.1| general secretion pathway protein D [Acinetobacter sp. DR1] Length = 757 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 69/312 (22%), Positives = 120/312 (38%), Gaps = 47/312 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 381 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 439 Query: 241 -----------------------EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPT 276 G ++ + R ++ ++ AL+ T L+ P+ Sbjct: 440 AAGYLSGGSAGAASAIAGGANKGNGATLALGNFENSRKAYGALIQALKSNTKSNLLSTPS 499 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S +T +T +V D GV L P + G + L Sbjct: 500 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 559 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD++ ++GIP LS Sbjct: 560 EVEQEVSNVQTSKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVELSRQGIPGLSS 619 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 IP +G LFR+ + + + + P +V +D + R N+ Sbjct: 620 IPYVGRLFRSDSRSNTKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 664 Query: 451 IYGPKEASEVEG 462 +Y + A + G Sbjct: 665 LYSLQLAMDRNG 676 >gi|290512027|ref|ZP_06551395.1| protein transporter HofQ [Klebsiella sp. 1_1_55] gi|289775817|gb|EFD83817.1| protein transporter HofQ [Klebsiella sp. 1_1_55] Length = 413 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + + + P + ++D S F++ G Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAEAGGSPGSGQITTLSSDMSVNDASTRAGFNI-GK 239 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ E L ALER + +A P L A Q AS G + Y+ S +GATSV Sbjct: 240 INGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 299 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GR+ L+++ + P V+ + G+ + ++ +T VE+ SG T+ Sbjct: 300 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETL 359 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 360 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410 >gi|220931453|ref|YP_002508361.1| type II and III secretion system protein [Halothermothrix orenii H 168] gi|219992763|gb|ACL69366.1| type II and III secretion system protein [Halothermothrix orenii H 168] Length = 881 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 135/326 (41%), Gaps = 52/326 (15%) Query: 106 GKQMLNLDILIE-RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 G+++ + ++ ++ +L ++ D ++ + +++ G + Q V L Sbjct: 300 GEEIDTEVVRVDYGNLDNLISVIQGLFPDIRLQSNPLKKEIIIKG---NTSEVQEIVSL- 355 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 +N L+I QV ++ E+ + + + G + +++ Sbjct: 356 --------------------VNSLDIP-RRQVIIEARFEEISANKISEFGMRPNLSEI-- 392 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 +F+ + +K + ++ L LE LA P L ++G++ Sbjct: 393 ------------QFIFDEATRELKSM--NITWPEYLRFLEEEGQANMLANPRLLTLNGEN 438 Query: 285 ASFTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 A G + K +S A S D G+ L FTP + G I + + E Sbjct: 439 ARLLIGDKVPVKIEETSGSSEESEGESNAVSYEYIDVGISLEFTPWITEDGYIIMDVAPE 498 Query: 336 VSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VS + G +P + R+A T + L G T + GL+++D + +PLL IP+L Sbjct: 499 VSSLGSPMGGGESIPPIKTREARTKIRLKDGQTFAIGGLIREDELESIAKVPLLGDIPLL 558 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G LFR S+ ++ +TE+ I TP +VK Sbjct: 559 GTLFRRSQTDKVKTEVVIFITPHIVK 584 >gi|83746397|ref|ZP_00943449.1| GspD [Ralstonia solanacearum UW551] gi|83726938|gb|EAP74064.1| GspD [Ralstonia solanacearum UW551] Length = 809 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 73/306 (23%), Positives = 115/306 (37%), Gaps = 45/306 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V++ L+ A QV ++ I EV D Q+G Q + +FG Sbjct: 425 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 483 Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 G VS + +L AL Sbjct: 484 LNLGVVAATVGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 543 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319 ++ L+ P L + + A G T S S T + D G+ L Sbjct: 544 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVK 603 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G + ++I E S V G NA P+ VR +T V G IVL GLL+D+ Sbjct: 604 PQITEGGLVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNY 663 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q ++ +P L IPILGALFR+ R++T + + P++++ A + D+ Y+ Sbjct: 664 QDSEQKVPGLGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRYNYMR 722 Query: 439 DAKAFF 444 + F Sbjct: 723 QTQQGF 728 >gi|262373971|ref|ZP_06067248.1| general secretion pathway protein D [Acinetobacter junii SH205] gi|262310982|gb|EEY92069.1| general secretion pathway protein D [Acinetobacter junii SH205] Length = 751 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 101/267 (37%), Gaps = 30/267 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L+I QV ++ I EV D Q+G Q ++ SSG + G Sbjct: 379 EAAIQQLDIR-RQQVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLINFTNVGSSLSKL 437 Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278 + G S + ++ AL+ T L+ P++ Sbjct: 438 AAGYLTGGAAGLGSAIGAGSSIVVGDYKEGANGSRKLYGALIQALKSNTKSNLLSTPSIV 497 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + A G + T S +T +T +V D GV L P + G + L + Sbjct: 498 TMDNEEAYIVVGQNVPFVTGSVTTNSTGVNPYTTVERKDVGVTLKVVPHIGEGGSVRLEV 557 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + EVS R T+V G T+VL GL+ D+ ++G+P+L IP Sbjct: 558 EQEVSAVQESRGQATDLVTSKRAIKTSVLADHGQTVVLGGLISDNSIHSRQGLPVLGDIP 617 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 LG LFR E+ + + P +V Sbjct: 618 YLGRLFRADSKTNEKRNLLVFIHPTIV 644 >gi|229576793|ref|YP_001008121.2| putative outer membrane porin HofQ [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 376 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L+++G + + + S F + + F+V + Sbjct: 145 QQVQLAAHIVTMSRENLQELGVRWGMGDTKPTASLRMSDFNVNLPLPNSAVSAGFNVARI 204 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + E+ + +A P L Q+AS G Y GAT++ Sbjct: 205 GGRLLELELSAL-EQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFK 263 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + GD + ++ T + + G TI Sbjct: 264 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETI 323 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + Q +PLL+ IP LG LF+ + E+ I TP L+ Sbjct: 324 VLGGIFQQKSSQGVNKVPLLADIPWLGGLFKQDTQQQSRRELVIFITPKLI 374 >gi|332139923|ref|YP_004425661.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonas macleodii str. 'Deep ecotype'] gi|327549945|gb|AEA96663.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Alteromonas macleodii str. 'Deep ecotype'] Length = 547 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 106/261 (40%), Gaps = 24/261 (9%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----------- 229 ++K +N L+I QV ++ + V D+ +Q+G + + S Sbjct: 285 ARKTINALDIP-VKQVLIESRMVTVLDDVDEQLGVRWGFSDRQDDNGISGSIEGADTIAG 343 Query: 230 ---------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + + F + ++D + L ALE +A P +T Sbjct: 344 GVVPSIENRLNVNLPVSSAAGSIGFQIASLVDGTILDLELSALESENKGEIIASPRITVA 403 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSE 338 + A G + Y +SS GATSV + L TP + RI L + + Sbjct: 404 NQHEAYIEQGTEIPYVQATSS-GATSVEFKKAVLSLKVTPHITPDNRIILDLVVTQDTRG 462 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + + GD + ++ T V + +G TIVL G+ + +PL +P++GALF Sbjct: 463 ETVTTSTGDAVAIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGDLPLVGALF 522 Query: 399 RNSRFNREETEIFIAATPFLV 419 RNS +++ E+ I TP +V Sbjct: 523 RNSSQLQQKRELLIFVTPKIV 543 >gi|131592|sp|P15644|GSPD_KLEPN RecName: Full=General secretion pathway protein D; AltName: Full=Pullulanase secretion envelope pulD; Flags: Precursor gi|7246031|gb|AAA25126.2| pulD (ttg start codon) [Klebsiella pneumoniae] Length = 660 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 136/351 (38%), Gaps = 45/351 (12%) Query: 146 VLHGMVRTIQDSQRA------VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----- 194 VL G+ T+Q ++A ++ + + N +++ VMN L Sbjct: 285 VLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 344 Query: 195 -QVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGGKFVSEGG---- 243 QV ++ IAEV+ +G Q + ++SG S A ++ +G Sbjct: 345 PQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSS 404 Query: 244 ----DFSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 S G+ F ++ +L AL +T LA P++ + A+F G + Sbjct: 405 LASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVL 464 Query: 297 TVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMP 349 T S +T +V G+ L P + + L I+ EVS ++ Sbjct: 465 TGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGA 524 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R + V + SG T+V+ GLL + + +PLL IP++GALFR++ + Sbjct: 525 TFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRN 584 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 + + P +++ D Y + FN KE ++ Sbjct: 585 LMLFIRPTVIRD---------RDEYRQASSGQYTAFNDAQSKQRGKENNDA 626 >gi|259982|gb|AAB24178.1| OutD=pectic enzyme secretion protein [Erwinia chrysanthemi, Peptide, 712 aa] Length = 712 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 72/361 (19%), Positives = 135/361 (37%), Gaps = 42/361 (11%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 T+V+ G T++ + L T R+ ++V+N L+I QV + Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITRPPDIMRDL------EQVINQLDIRRP-QVLV 402 Query: 199 KVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFA----------ADFGGKFVSEG 242 + IAE++ +G Q + +++G S A + S Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAMIGTDQFRSDGTLTTAYASAL 462 Query: 243 GDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 +F+ + R ++ +L AL LA P++ + A+F G + T S + Sbjct: 463 SNFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522 Query: 302 TGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYR 352 T +V G+ L P + + L+I+ EVS G N+ ++ Sbjct: 523 TVGSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNGSSNSSLGVTFN 582 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + V + + T+V+ GLL + +PLL IP LG+LFR+ + + + Sbjct: 583 TRTVNNAVMVTNRETVVVGGLLDKTAIETNNKVPLLGDIPWLGSLFRSKTQTMSKRNLML 642 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472 P +++ Y +K FN + + S ++ + + G Sbjct: 643 FLRPTIIRDP---------QQYQQASISKYNSFNNEQQQQRGQGNSVLDNNTLRLSGGNT 693 Query: 473 Y 473 Y Sbjct: 694 Y 694 >gi|207722789|ref|YP_002253224.1| general secretory pathway protein d [Ralstonia solanacearum MolK2] gi|206587973|emb|CAQ18554.1| general secretory pathway protein d [Ralstonia solanacearum MolK2] Length = 809 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 73/306 (23%), Positives = 115/306 (37%), Gaps = 45/306 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V++ L+ A QV ++ I EV D Q+G Q + +FG Sbjct: 425 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 483 Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 G VS + +L AL Sbjct: 484 LNLGVVAATVGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 543 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319 ++ L+ P L + + A G T S S T + D G+ L Sbjct: 544 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVK 603 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G + ++I E S V G NA P+ VR +T V G IVL GLL+D+ Sbjct: 604 PQITEGGLVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNY 663 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q ++ +P L IPILGALFR+ R++T + + P++++ A + D+ Y+ Sbjct: 664 QDSEQKVPGLGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRYNYMR 722 Query: 439 DAKAFF 444 + F Sbjct: 723 QTQQGF 728 >gi|94313628|ref|YP_586837.1| putative secretion type II protein [Cupriavidus metallidurans CH34] gi|93357480|gb|ABF11568.1| Putative secretion type II protein; gspD(secretin)-like protein [Cupriavidus metallidurans CH34] Length = 734 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 74/438 (16%), Positives = 162/438 (36%), Gaps = 75/438 (17%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 + S+ + P + A I + + + +++ ++ + + + V++ D Sbjct: 170 AAGSIMRTPVTLQFRDANIRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNAAIED 226 Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL----IERDIAH 122 V V + T++++ ++ L + D Sbjct: 227 AVDLILLQSQLDKKVLNANTLFIYPATP---------AKQQEYQELKVRTFQLSNVDSKQ 277 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 ++ L+ + + V+ ++TV + G TI+ +++ + + Sbjct: 278 VQSLLKSLLKIKEVVVDERANTVTIRGTPDTIRVAEQMIAAQD----------------- 320 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 E +V L+V + EV R+ L +G + + + P+ A +G Sbjct: 321 --------LPEPEVMLEVQVLEVSRERLTDLGIAWPNSFTMATPAS--ATTWGVLHHLTA 370 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + V + +F+ T LA P + + + A G + + SS+ Sbjct: 371 NELEVSPLSATANFKL------TDTDANLLASPRIRTRNKEKARILIGDKVPVISSSSTP 424 Query: 303 G------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------ 350 ++ D G+ L P V +G+++ EVS + +G+ + Sbjct: 425 STSGPSFTQTIQYLDVGIKLEVEPQVYRDNDVGIKLALEVSNITKTIQSGNAQTGLSSLA 484 Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R A T++ L G T +L GL+ D + + +P L ++P++G LF + + +T Sbjct: 485 YQIGTRSASTSLRLRDGETQILGGLISDQDRTSADKVPGLGQLPVVGRLFSDHNGDHVKT 544 Query: 409 EIFIAATPFLVKPVAMRD 426 EI + TP +V+P D Sbjct: 545 EIVLQITPHIVRPQLTMD 562 >gi|300903573|ref|ZP_07121495.1| general secretion pathway protein D [Escherichia coli MS 84-1] gi|301305534|ref|ZP_07211626.1| general secretion pathway protein D [Escherichia coli MS 124-1] gi|300404446|gb|EFJ87984.1| general secretion pathway protein D [Escherichia coli MS 84-1] gi|300839229|gb|EFK66989.1| general secretion pathway protein D [Escherichia coli MS 124-1] gi|315255908|gb|EFU35876.1| general secretion pathway protein D [Escherichia coli MS 85-1] Length = 650 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 325 TADQSVQEKLATVIARLDIRHA-QVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 383 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 384 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 443 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 444 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 503 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ +PLL Sbjct: 504 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 563 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 564 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYHSLSKEKYTRYRQEQQQRIDGKS 623 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 624 KALVGSEDLPVLDENTFN 641 >gi|229589906|ref|YP_002872025.1| putative type II secretion pathway protein D [Pseudomonas fluorescens SBW25] gi|229361772|emb|CAY48654.1| putative type II secretion pathway protein D precursor [Pseudomonas fluorescens SBW25] Length = 770 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 73/304 (24%), Positives = 126/304 (41%), Gaps = 31/304 (10%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V+++L+ QV ++ I EV D + G Q Sbjct: 419 QADATTNTLLISAPDPLYRN--LREVIDMLDQR-RAQVVIESLIVEVGEDDATEFGVQWQ 475 Query: 219 I----------------TGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETV 259 +G +S P+ + D K ++ G G + G+ + + Sbjct: 476 AGNLAGKGGFGGVNLGGSGVNSTPTSKTSIDVLPKGLNVGLVNGTVDIPGIGKVLDLKVL 535 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHD 311 AL+ L+ P L + ++AS G + T S TG +V + Sbjct: 536 ARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREE 595 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G+ L+ P + G + L I EVS + R DT++ L G +VL Sbjct: 596 VGLKLNVRPQISEGGTVKLDIYQEVSTVDTRASVDAGTVTNKRAIDTSILLDDGQIMVLG 655 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRP 430 GLL+D Q + +P LS IP LGALFRN + + +T + + P++++ A R ++ Sbjct: 656 GLLQDGYSQSNDAVPWLSDIPGLGALFRNEKRSVNKTNLMVFLRPYIIRDSGAGRSITLN 715 Query: 431 DDHY 434 + Sbjct: 716 RYEF 719 >gi|89110685|ref|AP_004465.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. W3110] gi|90111569|ref|NP_417784.4| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. MG1655] gi|170082844|ref|YP_001732164.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. DH10B] gi|238902416|ref|YP_002928212.1| general secretory pathway component, cryptic [Escherichia coli BW2952] gi|256025947|ref|ZP_05439812.1| general secretory pathway component, cryptic [Escherichia sp. 4_1_40B] gi|300932218|ref|ZP_07147497.1| general secretion pathway protein D [Escherichia coli MS 187-1] gi|300946547|ref|ZP_07160812.1| general secretion pathway protein D [Escherichia coli MS 116-1] gi|300954740|ref|ZP_07167173.1| general secretion pathway protein D [Escherichia coli MS 175-1] gi|301643855|ref|ZP_07243886.1| general secretion pathway protein D [Escherichia coli MS 146-1] gi|14917006|sp|P45758|GSPD_ECOLI RecName: Full=Probable general secretion pathway protein D; Flags: Precursor gi|85676716|dbj|BAE77966.1| general secretory pathway component, cryptic [Escherichia coli str. K12 substr. W3110] gi|87082242|gb|AAC76350.2| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. MG1655] gi|169890679|gb|ACB04386.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. DH10B] gi|238861291|gb|ACR63289.1| general secretory pathway component, cryptic [Escherichia coli BW2952] gi|260447656|gb|ACX38078.1| general secretion pathway protein D [Escherichia coli DH1] gi|300318291|gb|EFJ68075.1| general secretion pathway protein D [Escherichia coli MS 175-1] gi|300453793|gb|EFK17413.1| general secretion pathway protein D [Escherichia coli MS 116-1] gi|300460042|gb|EFK23535.1| general secretion pathway protein D [Escherichia coli MS 187-1] gi|301077758|gb|EFK92564.1| general secretion pathway protein D [Escherichia coli MS 146-1] gi|309703737|emb|CBJ03078.1| probable general secretion pathway protein D precursor [Escherichia coli ETEC H10407] gi|315618942|gb|EFU99525.1| general secretion pathway protein D [Escherichia coli 3431] Length = 650 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 325 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 383 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 384 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 443 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 444 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 503 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ +PLL Sbjct: 504 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 563 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 564 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 623 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 624 KALVGSEDLPVLDENTFN 641 >gi|331684967|ref|ZP_08385553.1| general secretion pathway protein D [Escherichia coli H299] gi|331077338|gb|EGI48550.1| general secretion pathway protein D [Escherichia coli H299] Length = 654 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 329 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 387 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 388 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 447 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 448 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 507 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ +PLL Sbjct: 508 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 567 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 568 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 627 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 628 KALVGSEDLPVLDENTFN 645 >gi|157162799|ref|YP_001460117.1| general secretion pathway protein D [Escherichia coli HS] gi|157068479|gb|ABV07734.1| general secretion pathway protein D [Escherichia coli HS] Length = 654 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 329 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 387 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 388 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 447 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 448 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 507 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ +PLL Sbjct: 508 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 567 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 568 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYLQEQQQRIDGKS 627 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 628 KALVGSEDLPVLDENTFN 645 >gi|331674826|ref|ZP_08375583.1| general secretion pathway protein D [Escherichia coli TA280] gi|331067735|gb|EGI39133.1| general secretion pathway protein D [Escherichia coli TA280] Length = 654 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 69/337 (20%), Positives = 124/337 (36%), Gaps = 24/337 (7%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + D+ +T +Q V+ L+I QV ++ I EV+ Sbjct: 310 SAMDNVAITADEQTNSLVITADQPVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 368 Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255 +G Q + +++G AA + GG S D FS Sbjct: 369 LGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 428 Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309 + +L AL LA P++ + + ASF G +T S +V Sbjct: 429 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 488 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G L TP V + L I+ EVS N+ P++ R V + +G T+V Sbjct: 489 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 548 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GLL D ++ +PLL IP++G LFR + R + + + P +++ + Sbjct: 549 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLS 608 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + + + + + G ++ ++ + Sbjct: 609 KEKYTRYRQEQQQRIDGKSKALVGSEDLPVLDENTFN 645 >gi|26249920|ref|NP_755960.1| general secretion pathway protein D [Escherichia coli CFT073] gi|91212762|ref|YP_542748.1| general secretion pathway protein D [Escherichia coli UTI89] gi|117625603|ref|YP_858926.1| putative general secretion pathway protein D precursor [Escherichia coli APEC O1] gi|227883456|ref|ZP_04001261.1| general secretion pathway protein D precursor [Escherichia coli 83972] gi|300979896|ref|ZP_07174772.1| general secretion pathway protein D [Escherichia coli MS 45-1] gi|301046096|ref|ZP_07193274.1| general secretion pathway protein D [Escherichia coli MS 185-1] gi|26110348|gb|AAN82534.1|AE016767_294 Probable general secretion pathway protein D precursor [Escherichia coli CFT073] gi|91074336|gb|ABE09217.1| probable general secretion pathway protein D [Escherichia coli UTI89] gi|115514727|gb|ABJ02802.1| putative general secretion pathway protein D precursor [Escherichia coli APEC O1] gi|227839600|gb|EEJ50066.1| general secretion pathway protein D precursor [Escherichia coli 83972] gi|294492078|gb|ADE90834.1| general secretion pathway protein D [Escherichia coli IHE3034] gi|300301922|gb|EFJ58307.1| general secretion pathway protein D [Escherichia coli MS 185-1] gi|300409407|gb|EFJ92945.1| general secretion pathway protein D [Escherichia coli MS 45-1] gi|307628360|gb|ADN72664.1| general secretory pathway component, cryptic [Escherichia coli UM146] gi|315284600|gb|EFU44045.1| general secretion pathway protein D [Escherichia coli MS 110-3] gi|315292358|gb|EFU51710.1| general secretion pathway protein D [Escherichia coli MS 153-1] gi|323950239|gb|EGB46121.1| general secretion pathway protein D [Escherichia coli H252] gi|323954552|gb|EGB50335.1| general secretion pathway protein D [Escherichia coli H263] Length = 654 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 69/337 (20%), Positives = 124/337 (36%), Gaps = 24/337 (7%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + D+ +T +Q V+ L+I QV ++ I EV+ Sbjct: 310 SAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 368 Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255 +G Q + +++G AA + GG S D FS Sbjct: 369 LGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 428 Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309 + +L AL LA P++ + + ASF G +T S +V Sbjct: 429 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 488 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G L TP V + L I+ EVS N+ P++ R V + +G T+V Sbjct: 489 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 548 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GLL D ++ +PLL IP++G LFR + R + + + P +++ + Sbjct: 549 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLS 608 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + + + + + G ++ ++ + Sbjct: 609 KEKYTRYRQEQQLRIDGKSKALIGSEDLPVLDENTFN 645 >gi|254163253|ref|YP_003046361.1| general secretory pathway component, cryptic [Escherichia coli B str. REL606] gi|253975154|gb|ACT40825.1| general secretory pathway component, cryptic [Escherichia coli B str. REL606] Length = 650 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 325 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 383 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 384 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 443 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 444 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 503 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ +PLL Sbjct: 504 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 563 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 564 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 623 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 624 KALVGSEDLPVLDENTFN 641 >gi|218560386|ref|YP_002393299.1| general secretory pathway component, cryptic [Escherichia coli S88] gi|218367155|emb|CAR04929.1| general secretory pathway component, cryptic [Escherichia coli S88] gi|307555412|gb|ADN48187.1| general secretory pathway component [Escherichia coli ABU 83972] Length = 650 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 69/337 (20%), Positives = 124/337 (36%), Gaps = 24/337 (7%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + D+ +T +Q V+ L+I QV ++ I EV+ Sbjct: 306 SAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 364 Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255 +G Q + +++G AA + GG S D FS Sbjct: 365 LGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 424 Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309 + +L AL LA P++ + + ASF G +T S +V Sbjct: 425 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 484 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G L TP V + L I+ EVS N+ P++ R V + +G T+V Sbjct: 485 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 544 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GLL D ++ +PLL IP++G LFR + R + + + P +++ + Sbjct: 545 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLS 604 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + + + + + G ++ ++ + Sbjct: 605 KEKYTRYRQEQQLRIDGKSKALIGSEDLPVLDENTFN 641 >gi|332304529|ref|YP_004432380.1| general secretion pathway protein D [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171858|gb|AEE21112.1| general secretion pathway protein D [Glaciecola agarilytica 4H-3-7+YE-5] Length = 690 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 84/434 (19%), Positives = 155/434 (35%), Gaps = 83/434 (19%) Query: 90 FGKNVGQANVILIGHDGKQMLNLD----ILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 K+ G+ N G D +++ D I++ DI + I + +E +T Sbjct: 218 INKSTGKTN--ASGKDAPRVVADDRTNSIMVSGDIKA-RQRIVNLIERMDQELETNGNTR 274 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------------------------ 181 V+ ++ + ++ + + +SS+ Sbjct: 275 VIFLKYSKAEELVKVLQGVSASIQAEEQGAAKSSSNSNRGDISIEAHEDSNALVITAQPD 334 Query: 182 -----KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----------SITGSSSGP 226 + V+ L+I QV ++ I EV +G Q S Sbjct: 335 MMRSLEDVIRQLDIR-RAQVQVEAIIVEVFEGDGTTVGVQWASEDYGAQQFSNGNVVGIG 393 Query: 227 SKSFAADFGGKFVSEGGDF---------------------SVKGVLDRF-------SFET 258 S + AA+ + F S+ G ++ F + Sbjct: 394 SLAVAAEQASDTTTTTVGFDDDGDPYSFDETTEGDYTALASLLGGVNGFLVGAVKDGWGA 453 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTHDYG 313 VL A+ T L+ P LT + + A F G + T S++ + V + G Sbjct: 454 VLQAVSTDTNSNVLSTPHLTTLDNEEAFFIVGQEVPIITGSTTGSNNTNPFQSVERQEIG 513 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L TP + + L I+ EVS + + R+ T V + GGTIVL GL Sbjct: 514 IKLKVTPQINEGNAVQLLIEQEVSSISGATSVDIL--INKREIKTNVIVDDGGTIVLGGL 571 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDD 432 + DD+Q+ +P+L IP +G LF+++ ++ + + + P +++ V D+SR Sbjct: 572 IDDDVQESVSKVPILGDIPFIGNLFKSTTTSKSKRNLMVFIRPTIIRDGVTANDISRKKY 631 Query: 433 HYSVEDDAKAFFFN 446 +Y + K Sbjct: 632 NYIRAEQLKRQSEG 645 >gi|206575908|ref|YP_002236236.1| protein transporter HofQ [Klebsiella pneumoniae 342] gi|206564966|gb|ACI06742.1| protein transporter HofQ [Klebsiella pneumoniae 342] Length = 413 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + + + P + ++D S F++ G Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAETGGSPGSGQITTLSSDMSVNDASTRAGFNI-GK 239 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ E L ALER + +A P L A Q AS G + Y+ S +GATSV Sbjct: 240 INGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 299 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GR+ L+++ + P V+ + G+ + ++ +T VE+ SG T+ Sbjct: 300 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETL 359 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 360 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410 >gi|110643564|ref|YP_671294.1| general secretion pathway protein D precursor [Escherichia coli 536] gi|191171536|ref|ZP_03033084.1| general secretion pathway protein D [Escherichia coli F11] gi|300974004|ref|ZP_07172411.1| general secretion pathway protein D [Escherichia coli MS 200-1] gi|331649123|ref|ZP_08350209.1| general secretion pathway protein D [Escherichia coli M605] gi|331659615|ref|ZP_08360553.1| general secretion pathway protein D [Escherichia coli TA206] gi|110345156|gb|ABG71393.1| probable general secretion pathway protein D precursor [Escherichia coli 536] gi|190908163|gb|EDV67754.1| general secretion pathway protein D [Escherichia coli F11] gi|281180360|dbj|BAI56690.1| general secretion pathway protein D [Escherichia coli SE15] gi|300309014|gb|EFJ63534.1| general secretion pathway protein D [Escherichia coli MS 200-1] gi|312947876|gb|ADR28703.1| general secretion pathway protein D precursor [Escherichia coli O83:H1 str. NRG 857C] gi|315298623|gb|EFU57878.1| general secretion pathway protein D [Escherichia coli MS 16-3] gi|324009016|gb|EGB78235.1| general secretion pathway protein D [Escherichia coli MS 57-2] gi|324014941|gb|EGB84160.1| general secretion pathway protein D [Escherichia coli MS 60-1] gi|330909367|gb|EGH37881.1| general secretion pathway protein D [Escherichia coli AA86] gi|331041621|gb|EGI13765.1| general secretion pathway protein D [Escherichia coli M605] gi|331052830|gb|EGI24863.1| general secretion pathway protein D [Escherichia coli TA206] Length = 654 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 69/337 (20%), Positives = 123/337 (36%), Gaps = 24/337 (7%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + D+ +T +Q V+ L+I QV ++ I EV+ Sbjct: 310 SAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 368 Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255 +G Q + +++G AA + GG S D FS Sbjct: 369 LGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 428 Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309 + +L AL LA P++ + + ASF G +T S +V Sbjct: 429 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 488 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G L TP V + L I+ EVS N+ P++ R V + +G T+V Sbjct: 489 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 548 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GLL D ++ +PLL IP++G LFR + R + + + P +++ + Sbjct: 549 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLS 608 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + + + + + G ++ + + Sbjct: 609 KEKYTRYRQEQQLRIDGKSKALVGSEDLPVLNENTFN 645 >gi|261493374|ref|ZP_05989900.1| competence protein E [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496640|ref|ZP_05993020.1| competence protein E [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307843|gb|EEY09166.1| competence protein E [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311018|gb|EEY12195.1| competence protein E [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 437 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 112/261 (42%), Gaps = 15/261 (5%) Query: 175 QYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSG------- 225 + + S K + NL+ + Q+ ++ I + + L+++G + I +G Sbjct: 165 KDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGR 224 Query: 226 ----PSKSFAADFGGKFVSEGGDFSVKGV--LDRFSFETVLHALERATAIRTLAEPTLTA 279 + F GG +V V ++ + L ALE+ ++ +A P L Sbjct: 225 LEGNGLNDVTNNLNVNFPITGGASAVLQVASINSRVLDLELSALEQENSVEIIASPRLLT 284 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + + AS G + Y ++ + AT V + + L P + + +I L + + P Sbjct: 285 TNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLGLEVVPHLSTQNQILLDLIVTQNSP 344 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + + ++ +T V G TIVL G+ + Q+ ++ +P+L IP + LF Sbjct: 345 NSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPILGSIPFIKRLFS 404 Query: 400 NSRFNREETEIFIAATPFLVK 420 +R + E+ I TP++++ Sbjct: 405 QTRDKISKRELVIFVTPYILQ 425 >gi|218691610|ref|YP_002399822.1| general secretory pathway component, cryptic [Escherichia coli ED1a] gi|218429174|emb|CAR10129.2| general secretory pathway component, cryptic [Escherichia coli ED1a] gi|222035034|emb|CAP77777.1| general secretion pathway protein D [Escherichia coli LF82] Length = 650 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 69/337 (20%), Positives = 123/337 (36%), Gaps = 24/337 (7%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + D+ +T +Q V+ L+I QV ++ I EV+ Sbjct: 306 SAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 364 Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255 +G Q + +++G AA + GG S D FS Sbjct: 365 LGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 424 Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309 + +L AL LA P++ + + ASF G +T S +V Sbjct: 425 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 484 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G L TP V + L I+ EVS N+ P++ R V + +G T+V Sbjct: 485 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 544 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GLL D ++ +PLL IP++G LFR + R + + + P +++ + Sbjct: 545 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLS 604 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + + + + + G ++ + + Sbjct: 605 KEKYTRYRQEQQLRIDGKSKALVGSEDLPVLNENTFN 641 >gi|152968741|ref|YP_001333850.1| pullulanase D protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893139|ref|YP_002917873.1| pullulanase-specific type II secretion system secretin [Klebsiella pneumoniae NTUH-K2044] gi|150953590|gb|ABR75620.1| Pullulanase D protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545455|dbj|BAH61806.1| pullulanase-specific type II secretion system secretin [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 657 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 74/355 (20%), Positives = 135/355 (38%), Gaps = 45/355 (12%) Query: 146 VLHGMVRTIQDSQR------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----- 194 VL G+ ++Q ++ A++ + + N +++ VMN L Sbjct: 282 VLTGISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 341 Query: 195 -QVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGGKFVSEGGDF-- 245 QV ++ IAEV+ +G Q + ++SG S A ++ +G Sbjct: 342 PQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSS 401 Query: 246 ---------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + ++ +L AL +T LA P++ + A+F G + Sbjct: 402 LASALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVL 461 Query: 297 TVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---P 349 T S +T +V G+ L P + + L I+ EVS ++ Sbjct: 462 TGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGA 521 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + Sbjct: 522 TFNTRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRN 581 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 + + P +++ D Y + FN KE+SE N Sbjct: 582 LMLFIRPTIIRD---------RDEYRQASSGQYTAFNNAQTKQRGKESSEASLSN 627 >gi|119476010|ref|ZP_01616362.1| type II and III secretion system protein [marine gamma proteobacterium HTCC2143] gi|119450637|gb|EAW31871.1| type II and III secretion system protein [marine gamma proteobacterium HTCC2143] Length = 630 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 22/298 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------QVTLK 199 +L + ++IQ +Q+ + + + + N ++ ++ + QV ++ Sbjct: 281 ILENLAKSIQSNQKDTDSNISIEASKSANALVINAPPSILTTMKSIISQLDIRRAQVMVE 340 Query: 200 VTIAEVRRDILKQIGFQH---------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + EVR ++ +G + + A G G G Sbjct: 341 AILVEVRGELASDVGVTWITDPDNSIVGAVNTLGNLPLANAPSDGSALPFSAGRGFTFGY 400 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-------SSSTG 303 + + L AL L+ PT+ AI + AS G + T S++ Sbjct: 401 FNGGDLQAALRALSATQNANILSTPTIVAIDNEEASLLVGQNVPFITGQATSSASSTNDP 460 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 T++ D G L TP + I L I + ++ R+ T + Sbjct: 461 FTTIERQDIGTSLVVTPRINQGDSITLEIHQKTETIAPSIDIASDIVTNKREIITKALIR 520 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +V+ GL+ D+ ++ E +PLL IP LG+LF + + +T + + P ++K Sbjct: 521 DDQVLVIGGLINDEETEIIEKVPLLGDIPYLGSLFSSKGTSHTKTNLMVFIHPTILKD 578 >gi|330010541|ref|ZP_08306775.1| general secretion pathway protein D [Klebsiella sp. MS 92-3] gi|328534526|gb|EGF61113.1| general secretion pathway protein D [Klebsiella sp. MS 92-3] Length = 657 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 74/355 (20%), Positives = 135/355 (38%), Gaps = 45/355 (12%) Query: 146 VLHGMVRTIQDSQR------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----- 194 VL G+ ++Q ++ A++ + + N +++ VMN L Sbjct: 282 VLTGISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 341 Query: 195 -QVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGGKFVSEGGDF-- 245 QV ++ IAEV+ +G Q + ++SG S A ++ +G Sbjct: 342 PQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSS 401 Query: 246 ---------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + ++ +L AL +T LA P++ + A+F G + Sbjct: 402 LASALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVL 461 Query: 297 TVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---P 349 T S +T +V G+ L P + + L I+ EVS ++ Sbjct: 462 TGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGA 521 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + Sbjct: 522 TFNTRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRN 581 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 + + P +++ D Y + FN KE+SE N Sbjct: 582 LMLFIRPTIIRD---------RDEYRQASSGQYTAFNNAQTKQRGKESSEASLSN 627 >gi|320323732|gb|EFW79816.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. B076] Length = 775 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 117/308 (37%), Gaps = 21/308 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206 G + + ++ S + + K++ + + QV ++ I EV Sbjct: 455 GANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 514 Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258 +G Q + +SG + + G + G ++ F + + Sbjct: 515 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 574 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312 L ALE + L+ P+L ++ Q A G S++T +SV Sbjct: 575 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 634 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIV 369 GV+L P + G + + IQ +VS N D P R T V SG T++ Sbjct: 635 GVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAQSGQTVL 694 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + + Sbjct: 695 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQ 752 Query: 430 PDDHYSVE 437 D Y + Sbjct: 753 VTDDYRQQ 760 >gi|288933223|ref|YP_003437282.1| type IV pilus secretin PilQ [Klebsiella variicola At-22] gi|288887952|gb|ADC56270.1| type IV pilus secretin PilQ [Klebsiella variicola At-22] Length = 412 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + + + P + ++D S F++ G Sbjct: 180 QVELAAHIVSMSETSLRELGVKWRLAEAGGSPGSGQITTLSSDMSVNDASTRAGFNI-GK 238 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ E L ALER + +A P L A Q AS G + Y+ S +GATSV Sbjct: 239 INGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 298 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GR+ L+++ + P V+ + G+ + ++ +T VE+ SG T+ Sbjct: 299 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETL 358 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 359 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 409 >gi|262044789|ref|ZP_06017834.1| general secretion pathway protein D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037872|gb|EEW39098.1| general secretion pathway protein D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 657 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 73/352 (20%), Positives = 134/352 (38%), Gaps = 45/352 (12%) Query: 146 VLHGMVRTIQDSQR------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----- 194 VL G+ ++Q ++ A++ + + N +++ VMN L Sbjct: 282 VLTGISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 341 Query: 195 -QVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFGGKFVSEGGDF-- 245 QV ++ IAEV+ +G Q + ++SG S A ++ +G Sbjct: 342 PQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSS 401 Query: 246 ---------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + ++ +L AL +T LA P++ + A+F G + Sbjct: 402 LASALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVL 461 Query: 297 TVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---P 349 T S +T +V G+ L P + + L I+ EVS ++ Sbjct: 462 TGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGA 521 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + Sbjct: 522 TFNTRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRN 581 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + + P +++ D Y + FN KE+SE Sbjct: 582 LMLFIRPTIIRD---------RDEYRQASSGQYTAFNNAQTKQRGKESSEAS 624 >gi|126665040|ref|ZP_01736023.1| Type II secretory pathway, component PulD [Marinobacter sp. ELB17] gi|126630410|gb|EBA01025.1| Type II secretory pathway, component PulD [Marinobacter sp. ELB17] Length = 640 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 112/269 (41%), Gaps = 29/269 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--- 235 +++++ L+I QV ++ I E+ ++ +Q+G Q + SSG + Sbjct: 327 QEAEQIVMALDIR-RAQVMIEAAIVEISENMGEQLGVQLAAGDESSGGFPVLGTNLASGG 385 Query: 236 --------------GKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLT 278 G + G + + ++ ++ AL ++A L+ P++ Sbjct: 386 MLGLNQVISAVLGDGTVPALAGGLTAGAGDRNRNGVTWGLLIQALSTSSAANLLSTPSII 445 Query: 279 AISGQSASFTSGGQHLYKTVSS-------STGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + Q + G ++T + + T++ D G+ L TPT+ + G + L Sbjct: 446 TLDNQESEIIVGQNVPFRTGQAAVSGEGLTNPFTTIERRDVGLTLKVTPTISADGLVRLV 505 Query: 332 IQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ V AG R+ TTV G TIVL GL+KDD + K +PLL Sbjct: 506 VEQTTENVVPTTVAGASDLITNKREIKTTVLADDGETIVLGGLMKDDYEVQKSKVPLLGD 565 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG LF + +R + + + P ++ Sbjct: 566 IPYLGRLFSSESESRVKRNLLVFLRPTIM 594 >gi|301064256|ref|ZP_07204699.1| general secretion pathway protein D [delta proteobacterium NaphS2] gi|300441701|gb|EFK06023.1| general secretion pathway protein D [delta proteobacterium NaphS2] Length = 694 Score = 190 bits (482), Expect = 6e-46, Method: Composition-based stats. Identities = 70/298 (23%), Positives = 117/298 (39%), Gaps = 27/298 (9%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G I R V T + ++V+ L+I V ++ I EV + Sbjct: 356 GKAPLISKEARIVADQATNSLVIMADPDDYMILEEVIQKLDIP-RMMVFIEALIMEVNVN 414 Query: 209 ILKQIGFQH--------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK------ 248 +G + + GSS G + + G + +G V Sbjct: 415 KDFNLGVEWEGVKTFTYDGKDAAAFAGSSPGNFDTISGVVGKGTLPQGFSMGVITDTIEI 474 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---- 304 + + V++A ++ + L+ P L + A G Y+ +T A Sbjct: 475 AGVKFPNLAAVVNAYQQDRDVHILSTPQLLTTDNEEAEIMVGRNVPYQVRQETTAAELDY 534 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVEL 362 +S D GV L TP + + L+I EV+ V + A D P R A TTV + Sbjct: 535 SSYEYKDVGVTLKVTPQISLERSVRLKIYQEVTRLVDNNALTASDRPETYKRLAQTTVIV 594 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 T+V+ GL+ DD + +P L IP++G LF+ + RE+T +FI TP +++ Sbjct: 595 KDANTVVIGGLIGDDTTHTEYKVPCLGDIPLVGWLFKGTSKKREKTNLFIFLTPRIIQ 652 >gi|291086346|ref|ZP_06355526.2| hypothetical protein CIT292_10180 [Citrobacter youngae ATCC 29220] gi|291067951|gb|EFE06060.1| protein transport protein HofQ [Citrobacter youngae ATCC 29220] Length = 386 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 13/278 (4%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTIAEVRR 207 + ++ + + N+ + V+N L +QV L I + Sbjct: 107 AKAGEKLLSAKGSMTVDKRTNRILLRDNSVVLNALEKWVAQMDLPVEQVELAAHIVTINE 166 Query: 208 DILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 L+++G + S+ + G + A+D + F++ G ++ E L AL Sbjct: 167 KSLRELGVKWSLADAQQPGAVGNVTTLASDLSVSAATSRVGFNI-GRINARLLELELSAL 225 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E+ + +A P L A Q AS G + Y+ S +GATSV + + + TPTVL Sbjct: 226 EQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVL 285 Query: 324 SPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 GRI L++ + P V+ G++ + ++ +T VE+ SG TI L G+ + Sbjct: 286 QKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETIALGGIFSHKNKAA 345 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL IP LG+LFR+ E E+ + TP LV Sbjct: 346 ADSVPLLGDIPWLGSLFRHDGKEDERRELVVFITPRLV 383 >gi|332143347|ref|YP_004429085.1| general secretion pathway protein D [Alteromonas macleodii str. 'Deep ecotype'] gi|327553369|gb|AEB00088.1| general secretion pathway protein D [Alteromonas macleodii str. 'Deep ecotype'] Length = 681 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 110/286 (38%), Gaps = 45/286 (15%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------- 217 S ++V+ L+I QV ++ I EV +G Q Sbjct: 335 SLEEVVRQLDIR-RAQVQVEAIIVEVFEGDGNTLGVQWVSEEGGGTQFNNGVIGVGSLAV 393 Query: 218 ---------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 + G + + DF GG + + + V+ A Sbjct: 394 ALRQAEDRETTQTNITANGEVVETTDTIEGDFTALASLLGGANGLIAGVIENGWGAVVQA 453 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317 + T LA P LT + + A F G + T +++ +V + G+ L Sbjct: 454 VSTDTNSNILATPHLTTMDNEEAFFIVGQEVPIITGTTTGSNNSNPFQTVDRQEVGIKLK 513 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + + L I+ EVS + S R+ TTV + GGTIVL GL+ +D Sbjct: 514 VTPQINEGDAVQLLIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDED 571 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +Q+ +PLL IP+LG LF+ + ++ + + + P +V+ A Sbjct: 572 VQESVSKVPLLGDIPVLGHLFKTTSTSKRKRNLMVFLKPTIVRDGA 617 >gi|311105841|ref|YP_003978694.1| general secretion pathway protein D [Achromobacter xylosoxidans A8] gi|310760530|gb|ADP15979.1| general secretion pathway protein D [Achromobacter xylosoxidans A8] Length = 790 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 74/292 (25%), Positives = 120/292 (41%), Gaps = 31/292 (10%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGG 236 S ++V++ L+ QV ++ I EV + G Q + +S G S + GG Sbjct: 411 SLREVIDQLDQR-RAQVLVESLIVEVSEAKAAEFGIQWMTGAGNINSDGTSFIGGTNLGG 469 Query: 237 KFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTA 279 ++ G ++ G+ + + A+E L+ P L Sbjct: 470 SGITGKGPTTIDGIGSGLTLGVVKGTVDVLGNKVINLGVLARAMENTGEANILSTPNLLT 529 Query: 280 ISGQSASFTSGGQHLYKT----VSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLR 331 + QSAS G + T S S G+T ++ D G+ L+ P + G + L Sbjct: 530 LDNQSASILVGKTVPFVTGQYVTSGSNGSTNPFQTIEREDVGLKLNIRPQISEGGAVKLD 589 Query: 332 IQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 I EVS NA R DT+V + G IVL GLL+D++ +PLL Sbjct: 590 IYQEVSSIDESRSNATTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLSTNSVPLLGS 649 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +P++G+LFR R +T + + P++V+ A R D Y A+A Sbjct: 650 LPVIGSLFRYDSRKRTKTNLMVFLRPYVVRD-ANRTAGVTMDRYDYMRRAQA 700 >gi|222111308|ref|YP_002553572.1| type II and iii secretion system protein [Acidovorax ebreus TPSY] gi|221730752|gb|ACM33572.1| type II and III secretion system protein [Acidovorax ebreus TPSY] Length = 356 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 99/361 (27%), Positives = 165/361 (45%), Gaps = 23/361 (6%) Query: 104 HDGKQMLNLDILIERDI-AHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161 +G Q+ N ++ + D A M LR+ ++ I V V D VVL GM + + Sbjct: 5 RNGTQI-NYEVTVSADHHAKTAMELRQLLSHDKGINVSAVGDKVVLDGMYANQDSAAKIQ 63 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 ++ + + Q N ++ + L + E V L V + EVR+ L IG + S G Sbjct: 64 KIVKAY------PQVLNLVRERPEDQLVVP-EQMVQLDVKVVEVRKQALDNIGVKWSNLG 116 Query: 222 ------SSSGPSKSFAADFGGK-----FVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 ++SG + +A+F G ++ + + +VL+ LE Sbjct: 117 VAGPTFATSGYFYANSANFRGLNQEGYPITTPARPFISYLGLATQITSVLNFLESNGDSW 176 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 TLAEP ++++SG S+ GG+ VSS G SV YGV+L F P + G + Sbjct: 177 TLAEPRISSVSGGSSKVQVGGEIPIP-VSSGFGQLSVVYKPYGVILEFKPVIDKAGNVRS 235 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 I EVS+P G ++ + +T V L T+V++GLLK + KEGIP++ + Sbjct: 236 SIVAEVSQPDRSAGQGQFVAFTTNRTETEVSLKQNETLVISGLLKSVGARNKEGIPVIGR 295 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH-YSVEDDAKAFFFNRVN 449 P+LG LF E+TE+ + TP + P A R ++ Y ++ K +++ Sbjct: 296 APVLGRLFSTQEMTNEQTEMLVVVTPRIHTPAADRAQVLASENAYQRLNEVKDMIESKLA 355 Query: 450 K 450 + Sbjct: 356 R 356 >gi|73542815|ref|YP_297335.1| type II and III secretion system secretin [Ralstonia eutropha JMP134] gi|72120228|gb|AAZ62491.1| type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal [Ralstonia eutropha JMP134] Length = 706 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 101/257 (39%), Gaps = 23/257 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------S 222 + +N ++I QV ++ I E + +G + G S Sbjct: 447 QGFLNKIDIP-VRQVIIEARIVEATDTFSRNLGVKLGFAGQYNNARVGNTYSNVLPGANS 505 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 +GP S A S+ L ALE + ++ P + + Sbjct: 506 DNGPFLSLPAGAINGTNPANIAVSIFNSAATRFLALELSALEADGKGKIISSPRVVTANN 565 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A G + Y+ +SS GATSV + L TP + G + L + +V++ +G Sbjct: 566 IKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVTPQITPEGNVLLDV--DVNKDSVG 622 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + + T V + +GGT+V+ G+ + +P L IP+LG LF+N+ Sbjct: 623 IQTTSGFAIDTKHVQTQVLVDNGGTVVIGGIYTQTESTDVDKVPFLGDIPVLGYLFKNNA 682 Query: 403 FNREETEIFIAATPFLV 419 R TE+ + TP ++ Sbjct: 683 KVRNRTELLVFLTPRVL 699 >gi|262170433|ref|ZP_06038111.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus MB-451] gi|261891509|gb|EEY37495.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus MB-451] Length = 567 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I V+ L ++G + + ++ S Sbjct: 304 REIIESLDIP-VKQVQIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGL 362 Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + F V + + L AL+ + ++ P L Sbjct: 363 LAEDEFPVDEFLNVNLASTSANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRL 422 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A G + Y SSS+GAT+V+ + L TP + R+ L + Sbjct: 423 ITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQD 481 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LG Sbjct: 482 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 541 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR + ++E+ I TP +V Sbjct: 542 ALFRRTYEQMGKSELLIFVTPKVV 565 >gi|239995641|ref|ZP_04716165.1| general secretion pathway protein D [Alteromonas macleodii ATCC 27126] Length = 683 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 111/286 (38%), Gaps = 45/286 (15%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S ++V+ L+I QV ++ I EV +G Q + + G V Sbjct: 335 SLEEVVRQLDIR-RAQVQVEAIIVEVFEGDGTTLGVQWASEAGGGTQFSNGVVPVGSLAV 393 Query: 240 S-------------------------------------EGGDFSVKGVLDRFSFETVLHA 262 + GG + + + V+ A Sbjct: 394 ALKQAEDDTDTEAYVTDDGEVVTVNTTDEGDYTALASLLGGANGLIAGVIENGWGAVVQA 453 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317 + T LA P LT + + A F G + T +++ +V + G+ L Sbjct: 454 VSTDTNSNILATPHLTTMDNEEAFFIVGQEVPIITGTTTGANNSNPFQTVDRQEVGIKLK 513 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + + L I+ EVS + S R+ TTV + GGTIVL GL+ +D Sbjct: 514 VTPQINEGDAVQLLIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDED 571 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +Q+ + +PLL IPILG LF+++ ++ + + + P +V+ A Sbjct: 572 VQESESKVPLLGDIPILGHLFKSTSTSKRKRNLMVFLKPTIVRDGA 617 >gi|328471682|gb|EGF42559.1| general secretion pathway protein D [Vibrio parahaemolyticus 10329] Length = 674 Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 26/317 (8%) Query: 132 ADSNIRVEMVSDTVVLHG---------MVRTIQDSQRAVELSETFLSQSGRN-------Q 175 + I ++++VL V + D +RA L E + + Q Sbjct: 306 GEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDIRRAQVLIEALIVEMAEGDGINLGVQ 365 Query: 176 YANSSSKKVMNLLNIAGED-QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 + + + V+ N QV + E +D+ K + +S T + D+ Sbjct: 366 WGSLETGAVIQYGNTGAPIGQVMVG---LEEAKDVTKTESYWNSDTNKWENRQYTEEGDY 422 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + GG + + ++ A+ + L+ P++T + ASF G + Sbjct: 423 STLASALGGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSITVMDNGEASFIVGEEVP 482 Query: 295 YKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 T S++ +V + G+ L P + + L I+ EVS V+G N Sbjct: 483 VITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDV 541 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LF+++ E+ Sbjct: 542 RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHLFKSTSTQTEKRN 601 Query: 410 IFIAATPFLVKPVAMRD 426 + + P +++ D Sbjct: 602 LMVFIKPTIIRDGMTAD 618 >gi|258620495|ref|ZP_05715533.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM573] gi|258587374|gb|EEW12085.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM573] Length = 572 Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I V+ L ++G + + ++ S Sbjct: 309 REIIESLDIP-VKQVQIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGL 367 Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + F V + + L AL+ + ++ P L Sbjct: 368 LAEDEFPVDEFLNVNLASTSANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRL 427 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A G + Y SSS+GAT+V+ + L TP + R+ L + Sbjct: 428 ITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQD 486 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LG Sbjct: 487 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 546 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR + ++E+ I TP +V Sbjct: 547 ALFRRTYEQMGKSELLIFVTPKVV 570 >gi|52841166|ref|YP_094965.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628277|gb|AAU27018.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 698 Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 114/263 (43%), Gaps = 28/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------GSSSGPS-------- 227 ++++ L+I QV ++ I EV +D + IG + ++ G+ G + Sbjct: 421 RELIKQLDIP-VKQVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAP 479 Query: 228 -------KSFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276 + D ++ SV L + + + L ALE ++ P Sbjct: 480 ANVVPLERRLNLDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPR 539 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L + Q+A SG + Y+ +SS GAT+V + L TP + G+I + +Q Sbjct: 540 LITTNQQAAVIESGEEIPYQEATSS-GATAVAFKKAVLSLKVTPQITPDGKILMDLQINQ 598 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 P G +P+ ++ T V + +G TIVL G+ K D ++ IP ++P++G Sbjct: 599 DTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGI 657 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LF N + + E+ I TP ++ Sbjct: 658 LFSNRQITLKNEELLIFITPRII 680 >gi|119776501|ref|YP_929241.1| type IV pilus biogenesis protein PilQ [Shewanella amazonensis SB2B] gi|119769001|gb|ABM01572.1| type IV pilus biogenesis protein PilQ [Shewanella amazonensis SB2B] Length = 685 Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 108/260 (41%), Gaps = 24/260 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ +L+I QV ++ + V+ ++ + +G + +T S Sbjct: 424 QRMIEVLDIPI-RQVLIESRMVTVKDNVAEDLGIRWGVTDQQGTKGTSGSLEGAESIAGG 482 Query: 230 --------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + F V + D + L ALE+ +A P +T + Sbjct: 483 VIPAISDRLNVNLPAPTNAASIAFHVAKLADGTVLDMELSALEQENKGEIIASPRITTSN 542 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--P 339 ++A G + Y + SSS G+T+V + L TP + R+ L ++ Sbjct: 543 QKAAYIEQGVEIPYVSASSS-GSTTVEFKKAVLSLRVTPQITPDNRVILDLEITQDSRGE 601 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + G + ++ T V + +G TIVL G+ + ++ +P+L IP++G LFR Sbjct: 602 TVDTATGRAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFR 661 Query: 400 NSRFNREETEIFIAATPFLV 419 N+ E E+ I TP +V Sbjct: 662 NTSDKNERQELLIFVTPKIV 681 >gi|193076133|gb|ABO10746.2| putative general secretion pathway protein [Acinetobacter baumannii ATCC 17978] Length = 758 Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 69/312 (22%), Positives = 119/312 (38%), Gaps = 47/312 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440 Query: 242 G---------------------GDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276 G+ + G+ + + + ++ AL+ T L+ P+ Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S +T +T +V D GV L P + G + L Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD ++GIP LS Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 IP +G LFR+ + + + + P +V +D + R N+ Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 665 Query: 451 IYGPKEASEVEG 462 +Y + A + G Sbjct: 666 LYSLQLAMDKNG 677 >gi|169797464|ref|YP_001715257.1| putative general secretion pathway protein [Acinetobacter baumannii AYE] gi|184156612|ref|YP_001844951.1| Type II secretory pathway, component PulD [Acinetobacter baumannii ACICU] gi|213155722|ref|YP_002317767.1| general secretion pathway protein D [Acinetobacter baumannii AB0057] gi|215484901|ref|YP_002327140.1| general secretion pathway protein D [Acinetobacter baumannii AB307-0294] gi|301347975|ref|ZP_07228716.1| general secretion pathway protein D [Acinetobacter baumannii AB056] gi|301510797|ref|ZP_07236034.1| general secretion pathway protein D [Acinetobacter baumannii AB058] gi|301596692|ref|ZP_07241700.1| general secretion pathway protein D [Acinetobacter baumannii AB059] gi|332874904|ref|ZP_08442755.1| general secretion pathway protein D [Acinetobacter baumannii 6014059] gi|169150391|emb|CAM88288.1| putative general secretion pathway protein [Acinetobacter baumannii AYE] gi|183208206|gb|ACC55604.1| Type II secretory pathway, component PulD [Acinetobacter baumannii ACICU] gi|213054882|gb|ACJ39784.1| general secretion pathway protein D [Acinetobacter baumannii AB0057] gi|213988659|gb|ACJ58958.1| general secretion pathway protein D [Acinetobacter baumannii AB307-0294] gi|322506499|gb|ADX01953.1| PulD [Acinetobacter baumannii 1656-2] gi|323516378|gb|ADX90759.1| Type II secretory pathway, component PulD [Acinetobacter baumannii TCDC-AB0715] gi|332736847|gb|EGJ67823.1| general secretion pathway protein D [Acinetobacter baumannii 6014059] Length = 758 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 69/312 (22%), Positives = 119/312 (38%), Gaps = 47/312 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440 Query: 242 G---------------------GDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276 G+ + G+ + + + ++ AL+ T L+ P+ Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S +T +T +V D GV L P + G + L Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD ++GIP LS Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 IP +G LFR+ + + + + P +V +D + R N+ Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 665 Query: 451 IYGPKEASEVEG 462 +Y + A + G Sbjct: 666 LYSLQLAMDKNG 677 >gi|257485212|ref|ZP_05639253.1| general secretion pathway protein GspD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 619 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 73/332 (21%), Positives = 128/332 (38%), Gaps = 31/332 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++ L+ QV ++ I EV D Q G Q Sbjct: 269 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 325 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G + G G ++ G+ + + + Sbjct: 326 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 385 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313 AL+ L+ P L + ++AS G + T S TG +V + G Sbjct: 386 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 445 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L I EVS + R DT++ L G +VL GL Sbjct: 446 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 505 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDD 432 L+D Q E +P LS+IP+LG LFRN + +T + + P++++ R+++ + Sbjct: 506 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIRDSGTGRNITL--N 563 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 Y A+ N + +A ++ Sbjct: 564 RYEFMRRAQGNLRPERNWMLPDMQAPQLPSAA 595 >gi|238797288|ref|ZP_04640789.1| Protein transporter HofQ [Yersinia mollaretii ATCC 43969] gi|238718925|gb|EEQ10740.1| Protein transporter HofQ [Yersinia mollaretii ATCC 43969] Length = 406 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 Q+ L I + R+ L+++G + + ++S F + + F+V + Sbjct: 175 QQIQLAAHIVTMSRENLQELGVRWGMGEPPHTTSLRVNDFNVNLPLANSAVSAGFNVARI 234 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + E+ + +A P L A Q+AS G Y GA S+ Sbjct: 235 GGRLLELELSAL-EQENQVDIIASPRLVASHQQTASIKQGSDIPYTVSRGEKGAASIEFK 293 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + GD + ++ T + + G TI Sbjct: 294 EAVLGMEVTPKILRNGKITLNLKISQNMPGMTIKRGDTEALLIDKQEIKTQITVNDGETI 353 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + Q +P+L+ IP LGALF+ + E+ I TP L+ Sbjct: 354 VLGGIFQQKNSQAVNKVPILADIPWLGALFKQDAQQQNRRELVIFITPRLI 404 >gi|325265676|ref|ZP_08132365.1| type IV pilus secretin PilQ [Kingella denitrificans ATCC 33394] gi|324982807|gb|EGC18430.1| type IV pilus secretin PilQ [Kingella denitrificans ATCC 33394] Length = 705 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 96/265 (36%), Gaps = 29/265 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L++ + QV ++ I E + + +G + S S Sbjct: 434 QRLIEELDVPAK-QVMVEARIVEAADGVARDLGVKFGANRQGSTSWGSNWGNGVEANRRY 492 Query: 230 --------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 FA + S +V + L A+E +T++ P Sbjct: 493 VGNGTGSGSNGGVNFAPNVNLPVSSATSSIAVIRSWASGALGLELSAMETDNLTKTISTP 552 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + + A G Q Y T S G + + D + L TP + +I L I Sbjct: 553 RVLTQDRKEAEIRQGTQIPY-TTRGSNGEVTTSFKDAILSLKVTPRITPDSKIILDITIN 611 Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EP VN P R T + GGT+V+ G+ ++ + +P L IP+L Sbjct: 612 KDEPDYTRVNVEGEPGITTRAVKTQAMIEDGGTLVVGGIYQEQMSNNISKVPFLGDIPVL 671 Query: 395 GALFRNSRFNREETEIFIAATPFLV 419 G LF++ + E+ TP ++ Sbjct: 672 GNLFKSRSRSHTRNELLFFITPRIM 696 >gi|54293906|ref|YP_126321.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila str. Lens] gi|53753738|emb|CAH15196.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila str. Lens] Length = 698 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 114/263 (43%), Gaps = 28/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------GSSSGPS-------- 227 ++++ L+I QV ++ I EV +D + IG + ++ G+ G + Sbjct: 421 RELIKQLDIP-VKQVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAP 479 Query: 228 -------KSFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276 + D ++ SV L + + + L ALE ++ P Sbjct: 480 ANVVPLERRLNLDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPR 539 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L + Q+A SG + Y+ +SS GAT+V + L TP + G+I + +Q Sbjct: 540 LITTNQQAAVIESGEEIPYQEATSS-GATAVAFKKAVLSLKVTPQITPDGKILMDLQINQ 598 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 P G +P+ ++ T V + +G TIVL G+ K D ++ IP ++P++G Sbjct: 599 DTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGI 657 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LF N + + E+ I TP ++ Sbjct: 658 LFSNRQITLKNEELLIFITPRII 680 >gi|239502032|ref|ZP_04661342.1| general secretion pathway protein D [Acinetobacter baumannii AB900] Length = 758 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 69/312 (22%), Positives = 119/312 (38%), Gaps = 47/312 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440 Query: 242 G---------------------GDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276 G+ + G+ + + + ++ AL+ T L+ P+ Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S +T +T +V D GV L P + G + L Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD ++GIP LS Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 IP +G LFR+ + + + + P +V +D + R N+ Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 665 Query: 451 IYGPKEASEVEG 462 +Y + A + G Sbjct: 666 LYSLQLAMDKNG 677 >gi|237703055|ref|ZP_04533536.1| general secretion pathway protein D [Escherichia sp. 3_2_53FAA] gi|226902319|gb|EEH88578.1| general secretion pathway protein D [Escherichia sp. 3_2_53FAA] Length = 654 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 69/337 (20%), Positives = 124/337 (36%), Gaps = 24/337 (7%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + D+ +T +Q V+ L+I QV ++ I EV+ Sbjct: 310 SAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLN 368 Query: 213 IGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255 +G Q + +++G AA + GG S D FS Sbjct: 369 LGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFN 428 Query: 256 --FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309 + +L AL LA P++ + + ASF G +T S +V Sbjct: 429 GDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVER 488 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G L TP V + L I+ EVS N+ P++ R V + +G T+V Sbjct: 489 KTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVV 548 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GLL D ++ +PLL IP++G LFR + R + + + P +++ + Sbjct: 549 LGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTVIRDDDVYRSLS 608 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + + + + + + G ++ ++ + Sbjct: 609 KEKYTRYRQEQQLRIDGKSKALIGSEDLPVLDENTFN 645 >gi|239787173|emb|CAR94716.1| wmpD protein [Pseudoalteromonas ruthenica] Length = 688 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 116/288 (40%), Gaps = 47/288 (16%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------- 217 S +KV+ L+I QV ++ I EV G Q Sbjct: 340 SLEKVIERLDIR-RAQVLVEAIIVEVSEGDGVNFGLQWISEQGGMLQFNNGTTVPVGSLA 398 Query: 218 -------------SITGSSSGPSKSFA----ADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 ++ GS SG + D G GG + + + + ++ Sbjct: 399 VAAEQARDKTITDNVVGSESGVVTPISRTEEGDLGPLASLLGGINGLAMGIVKNDWGAIV 458 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315 A+ T LA P++T + + AS G + T SS+ +V + GV Sbjct: 459 QAVSNDTNSNILATPSITTMDNEEASMIVGQEVPIITGSSTGSNNENPFQTVDRQEVGVK 518 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + + L I+ EVS V G A D+ S R TTV GG +VL GL+ Sbjct: 519 LKVTPQINDGSAVQLTIEQEVSN-VAGSTAVDI-SINKRAITTTVLADDGGMVVLGGLID 576 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +D+Q+ +PLL IP+LG LF+++ ++ + + + P +++ + Sbjct: 577 EDVQESVSKVPLLGDIPVLGHLFKSTSTSKRKRNLIVFIRPTILRDIE 624 >gi|308047936|ref|YP_003911502.1| general secretion pathway protein D [Ferrimonas balearica DSM 9799] gi|307630126|gb|ADN74428.1| general secretion pathway protein D [Ferrimonas balearica DSM 9799] Length = 723 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 109/280 (38%), Gaps = 43/280 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+ L+I QV ++ I E+ G Q +F G Sbjct: 344 ESVIRQLDIR-RAQVLVEAIIVEIAEGDEVGFGVQWGSADGGLIQYNTFGTTIGEVGAGI 402 Query: 236 -------------------------GKFVSEGGDFS----VKGVLDRFSFETVLHALERA 266 G + S + + F ++ A+ Sbjct: 403 WDARDVPGTEVCSPEGVCTTNPDQDGDITTLAAALSKVNGMAWGVAMGDFGALIQAVAAD 462 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPT 321 + LA P++T + Q ASF G + T S+S T+V + G+ L TP Sbjct: 463 SNSNVLATPSITTLDNQEASFIVGDEVPVITGSTSGSNNDNPFTTVERKEVGIKLKVTPQ 522 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + L I+ EVS V G A D+ ++ R TTV SG T+VL GLL +D+Q+ Sbjct: 523 INEGNAVQLEIEQEVSN-VNGRTAVDV-TFGKRTLTTTVLADSGETVVLGGLLNEDVQES 580 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +PLL IP++G LF ++ + + + I P +++ Sbjct: 581 VSKVPLLGDIPVIGHLFSSTSSKKTKRNLMIFIKPTIIRD 620 >gi|206901782|ref|YP_002250755.1| bacterial type II and III secretion system protein [Dictyoglomus thermophilum H-6-12] gi|206740885|gb|ACI19943.1| bacterial type II and III secretion system protein [Dictyoglomus thermophilum H-6-12] Length = 1256 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 13/242 (5%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 SS + ++ L+ QV + V + EV R+ +K IG + S+G + + Sbjct: 1028 SSVESMIAKLDKPTP-QVKIDVQVIEVSRENIKDIGIEWGTGSISTGLQITANVGWQDLR 1086 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 +S +++ + ALE + LA+P++T +SG+S G + + Sbjct: 1087 IS---------IINPGQISANIKALESQNKAKILAQPSMTTVSGKSTRIMIGDRVPLISY 1137 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 + G V+ D G++L+ TPTV + G I + +VS V D+P R+A T Sbjct: 1138 -DAQGNRQVSFVDVGIILNVTPTVNADGTITANLNPQVSTIQGYVQ--DVPIISTREAQT 1194 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V L +G T+ L GLL+ + + +PLL IPILG LF+ + + E E+ I TP + Sbjct: 1195 IVNLKNGETLALGGLLRQEEIESMSKVPLLGDIPILGELFKARKIQKVERELIILITPKI 1254 Query: 419 VK 420 ++ Sbjct: 1255 IE 1256 >gi|254479855|ref|ZP_05093103.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2148] gi|214039417|gb|EEB80076.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2148] Length = 677 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 66/305 (21%), Positives = 117/305 (38%), Gaps = 45/305 (14%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------- 229 ++ + V++ L+I QV ++ I E+ + +G Q + SG S Sbjct: 329 AAIESVIHRLDIR-RAQVLVEAIIVEMTFSEGQDLGLQWLFANTDSGFYGSNINSPSQAQ 387 Query: 230 -----------------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 A G + G V D + +L+AL+ Sbjct: 388 QLAGALNPDNGDEATPSNDSEFDVGALAGALASTPGLSLGWGSVDDDLTMTVILNALKTQ 447 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLH 317 L+ P+L + Q A T G + T S + + ++ + G+ L Sbjct: 448 GNANILSTPSLLTLDNQEAFITVGQNVPFITGSYTNSGSSDGASNPFQTIERENVGITLA 507 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TP + + L I+ EVS +IG ++ RK T V +VL GL+ Sbjct: 508 VTPHINEGDSVVLEIEQEVSNVIIGASQISEAADIITSERKIQTKVLAQDSKVVVLGGLI 567 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +D++Q ++ +P+L IP LG LFR + +T + I P +++ A D + D + Sbjct: 568 EDNVQDGQQKVPILGDIPFLGRLFRTDSVDVSKTNLLIFIRPTIIRDNAQLDGATADKYR 627 Query: 435 SVEDD 439 + D Sbjct: 628 YIRDQ 632 >gi|157146468|ref|YP_001453787.1| hypothetical protein CKO_02228 [Citrobacter koseri ATCC BAA-895] gi|157083673|gb|ABV13351.1| hypothetical protein CKO_02228 [Citrobacter koseri ATCC BAA-895] Length = 640 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 18/272 (6%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGG 236 +S +KV++ L+I QV ++ IAEV+ +G Q + G G + Sbjct: 328 NSLEKVIDKLDIRRP-QVLVEAIIAEVQDGAGTDLGVQWTSKHGGVQFGATGLPIGQVKN 386 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295 + + F ++ AL L+ P++ + + ASF G Sbjct: 387 GTIKGVNFTGMATGFFNGDFGALMTALSTNGKNDILSTPSVVTLDNKEASFNVGQDVPVL 446 Query: 296 ---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPS 350 +T + +V G L P + I ++I+ EVS + P+ Sbjct: 447 SGSQTTTGDNVFNTVERKTVGTKLKILPQINDGDMIHMKIEQEVSSVDASSTEDSSLGPT 506 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+VL GL+++ +Q +PLL IP++G LFR + + + + Sbjct: 507 FNTRTINNEVMVHSGQTVVLGGLIENVTKQNVSKVPLLGDIPLVGQLFRYTSQDTTKRNL 566 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + +++ DD+YS K Sbjct: 567 MVFIHTTVLRD---------DDNYSAASKEKY 589 >gi|238896859|ref|YP_002921604.1| outer membrane porin HofQ [Klebsiella pneumoniae NTUH-K2044] gi|238549186|dbj|BAH65537.1| outer membrane porin [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 414 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + + + SG + ++D S F++ G Sbjct: 182 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNI-GK 240 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ E L ALER + +A P L A Q AS G + Y+ S +GATSV Sbjct: 241 INGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 300 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+ Sbjct: 301 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETL 360 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 361 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 411 >gi|237728710|ref|ZP_04559191.1| type II secretion system protein [Citrobacter sp. 30_2] gi|226909332|gb|EEH95250.1| type II secretion system protein [Citrobacter sp. 30_2] Length = 415 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 122/252 (48%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKS 229 N A ++ +K ++ +++ QV L I + L+++G + S+ + G + Sbjct: 163 NSVALNTLEKWVSQMDLPVA-QVELAAHIVTINEKSLRELGVKWSLADAQQSGAVGNVTT 221 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 A+D + F++ G ++ E L ALE+ + +A P L A Q AS Sbjct: 222 LASDLSVATATSRVGFNI-GRINGRLLELELSALEQKQQLDIIASPRLLASHLQPASIKQ 280 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 281 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 340 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG TI L G+ + + +PLL IP LG+LFR+ E Sbjct: 341 VLAIDKQEIETQVEVKSGETIALGGIFSHKNKSAADSVPLLGDIPWLGSLFRHDGKEDER 400 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 401 RELVVFITPRLV 412 >gi|34979599|gb|AAQ83844.1| type IV pilus biogenesis secretin PilQ precursor [Legionella pneumophila 130b] gi|307609724|emb|CBW99235.1| type IV pilus [Legionella pneumophila 130b] Length = 698 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 114/263 (43%), Gaps = 28/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------GSSSGPS-------- 227 ++++ L+I QV ++ I EV +D + IG + ++ G+ G + Sbjct: 421 RELIKQLDIP-VKQVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAP 479 Query: 228 -------KSFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276 + D ++ SV L + + + L ALE ++ P Sbjct: 480 ANVVPLERRLNLDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPR 539 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L + Q+A SG + Y+ +SS GAT+V + L TP + G+I + +Q Sbjct: 540 LITTNQQAAVIESGEEIPYQEATSS-GATAVAFKKAVLSLKVTPQITPDGKILMDLQINQ 598 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 P G +P+ ++ T V + +G TIVL G+ K D ++ IP ++P++G Sbjct: 599 DTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGI 657 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LF N + + E+ I TP ++ Sbjct: 658 LFSNRQITLKNEELLIFITPRII 680 >gi|54296952|ref|YP_123321.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila str. Paris] gi|53750737|emb|CAH12144.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila str. Paris] Length = 698 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 114/263 (43%), Gaps = 28/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------GSSSGPS-------- 227 ++++ L+I QV ++ I EV +D + IG + ++ G+ G + Sbjct: 421 RELIKQLDIP-VKQVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAP 479 Query: 228 -------KSFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276 + D ++ SV L + + + L ALE ++ P Sbjct: 480 ANVVPLERRLNLDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPR 539 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L + Q+A SG + Y+ +SS GAT+V + L TP + G+I + +Q Sbjct: 540 LITTNQQAAVIESGEEIPYQEATSS-GATAVAFKKAVLSLKVTPQITPDGKILMDLQINQ 598 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 P G +P+ ++ T V + +G TIVL G+ K D ++ IP ++P++G Sbjct: 599 DTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGI 657 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LF N + + E+ I TP ++ Sbjct: 658 LFSNRQITLKNEELLIFITPRII 680 >gi|126640364|ref|YP_001083348.1| putative general secretion pathway protein [Acinetobacter baumannii ATCC 17978] Length = 667 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 69/312 (22%), Positives = 119/312 (38%), Gaps = 47/312 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 291 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 349 Query: 242 G---------------------GDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276 G+ + G+ + + + ++ AL+ T L+ P+ Sbjct: 350 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 409 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S +T +T +V D GV L P + G + L Sbjct: 410 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 469 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD ++GIP LS Sbjct: 470 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 529 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 IP +G LFR+ + + + + P +V +D + R N+ Sbjct: 530 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 574 Query: 451 IYGPKEASEVEG 462 +Y + A + G Sbjct: 575 LYSLQLAMDKNG 586 >gi|289648905|ref|ZP_06480248.1| general secretion pathway protein D [Pseudomonas syringae pv. aesculi str. 2250] gi|330987884|gb|EGH85987.1| general secretion pathway protein D [Pseudomonas syringae pv. lachrymans str. M301315] Length = 775 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 64/308 (20%), Positives = 116/308 (37%), Gaps = 21/308 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206 G + + ++ S + + K++ + + QV ++ I EV Sbjct: 455 GANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 514 Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258 +G Q + +SG + + G + G ++ F + + Sbjct: 515 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 574 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312 L ALE + L+ P+L ++ Q A G S++T +SV Sbjct: 575 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 634 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIV 369 GV+L P + G + + IQ +VS D P R T V SG T++ Sbjct: 635 GVILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSGQTVL 694 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ + + Sbjct: 695 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQ 752 Query: 430 PDDHYSVE 437 D Y + Sbjct: 753 VTDDYRQQ 760 >gi|289625539|ref|ZP_06458493.1| general secretion pathway protein D [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866897|gb|EGH01606.1| general secretion pathway protein D [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 775 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 64/308 (20%), Positives = 116/308 (37%), Gaps = 21/308 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206 G + + ++ S + + K++ + + QV ++ I EV Sbjct: 455 GANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 514 Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258 +G Q + +SG + + G + G ++ F + + Sbjct: 515 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 574 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312 L ALE + L+ P+L ++ Q A G S++T +SV Sbjct: 575 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 634 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIV 369 GV+L P + G + + IQ +VS D P R T V SG T++ Sbjct: 635 GVILDVVPRINPGGLVYMDIQQQVSTADTNSTNNDANGNPRISTRSVATQVAAQSGQTVL 694 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ + + Sbjct: 695 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQ 752 Query: 430 PDDHYSVE 437 D Y + Sbjct: 753 VTDDYRQQ 760 >gi|332289551|ref|YP_004420403.1| putative outer membrane porin HofQ [Gallibacterium anatis UMN179] gi|330432447|gb|AEC17506.1| putative outer membrane porin HofQ [Gallibacterium anatis UMN179] Length = 380 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 21/258 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------P 226 K++++ L+ G+ Q+ ++ I + + L ++G + + + Sbjct: 103 KQLISQLDKPGK-QIAIEARIVTINNESLNELGVRWGMFSDADNFHKVAAKFDSFGLENL 161 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 S +F + V + R + L ALE+ + +A P L + + AS Sbjct: 162 SSHLNVNFSTSSEAASIALQVAKIHGRL-LDLELKALEQENNVEIIASPHLLTSNQRKAS 220 Query: 287 FTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV- 343 G + Y + + T + + + L TP VL G I L + + + Sbjct: 221 IKQGSEIPYVIEDDTERSSRTHIEFKEAVLGLEVTPQVLHQGVISLDLVVTQNSAGASIP 280 Query: 344 -NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 AG + + ++ + V + G T+VL G+ D I + + +PLL IP LG LF + Sbjct: 281 YGAGQVVTIDKQEVQSQVLVRDGETVVLGGIFHDLIGKGENKVPLLGDIPGLGKLFSSKS 340 Query: 403 FNREETEIFIAATPFLVK 420 ++ E+ I TP ++ Sbjct: 341 ERHQKRELVIFITPRIIH 358 >gi|330882201|gb|EGH16350.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 216 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 79/204 (38%), Positives = 115/204 (56%), Gaps = 5/204 (2%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 S + + +L AL+ + LAEP +TA++GQ+ASF +GG+ V + Sbjct: 1 NGISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMTGQTASFLAGGEVAVP-VPVNR 59 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADT 358 + YGV L F+PT+L GRI L+++ EVS + VN +PS+RVR+ADT Sbjct: 60 EVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGYQVPSFRVRRADT 119 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ SG T +AGL + + Q + +P+L +PILG LFR+ RF R ETE+ I TP+L Sbjct: 120 RVEVGSGQTFAIAGLFQHESSQDMDKVPMLGDMPILGNLFRSKRFQRNETELVILITPYL 179 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKA 442 V+PV R ++ P D A A Sbjct: 180 VEPVKDRVVATPLDKQRAASTASA 203 >gi|209518484|ref|ZP_03267306.1| type II and III secretion system protein [Burkholderia sp. H160] gi|209501117|gb|EEA01151.1| type II and III secretion system protein [Burkholderia sp. H160] Length = 684 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 85/481 (17%), Positives = 178/481 (37%), Gaps = 68/481 (14%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 + S+ + P + A + + + + +++ ++ + + + V++ T D Sbjct: 190 AASSIMRTPVTLQFRDANVRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNATLQD 246 Query: 79 VV--VHSPRTMYLFGKNVGQANVILIGHD--GKQMLNLDILI------ERDIAHLEMTLR 128 V + + K AN + I KQ+ ++ + + ++ L+ Sbjct: 247 TVNMILMQNQL---DKKQLNANTLFIYPATPAKQLEYQELKVRTFQLSNVEAKQIQSLLK 303 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + + V+ ++TV + G TI+ +++ + + Sbjct: 304 SLLKIKEVVVDERANTVTIRGTPDTIRVAEQMIAAQD----------------------- 340 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + +V L+V + EV D L +G + + S PS +G +V Sbjct: 341 --LPDPEVILEVKVLEVSHDRLTDLGIAWPNSFTVSTPST--VDTWGELHHLPINALNVS 396 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----- 303 G+ +F+ T LA P++ A + + A G + + SS+ Sbjct: 397 GLSATANFKL------TDTDANLLASPSIRARNKEKARILIGDKVPVISSSSTPSTSGPS 450 Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--------YRVR 354 A ++ D G+ L P V +G+++ EVS +++ + + R Sbjct: 451 YAQTIQYLDVGIKLEVEPQVYRDADVGMKLNLEVSNITNTISSSNSTTGLTSLAYEIGTR 510 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 A T++ + G + +L GL++D+ + + +P L ++P+LG LF N + ++TEI + Sbjct: 511 SASTSLRVHDGESQILGGLIQDEDRLTADKVPGLGQLPVLGRLFSNHNGDHKKTEIVLEI 570 Query: 415 TPFLVKPVAMRDLSRP-----DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 TP +V+P D D D + P A G G Sbjct: 571 TPHIVRPQTSADADTQELWSGTDVNVHADQLRLDPVGAEATEQMPVPAVRTPGNVGGGTT 630 Query: 470 G 470 G Sbjct: 631 G 631 >gi|207744652|ref|YP_002261044.1| general secretory pathway protein d [Ralstonia solanacearum IPO1609] gi|206596059|emb|CAQ62986.1| general secretory pathway protein d [Ralstonia solanacearum IPO1609] Length = 777 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 73/306 (23%), Positives = 115/306 (37%), Gaps = 45/306 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V++ L+ A QV ++ I EV D Q+G Q + +FG Sbjct: 393 RTVIDDLD-ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNI 451 Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 G VS + +L AL Sbjct: 452 LNLGVVAATVGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDG 511 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFT 319 ++ L+ P L + + A G T S S T + D G+ L Sbjct: 512 SVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVK 571 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G + ++I E S V G NA P+ VR +T V G IVL GLL+D+ Sbjct: 572 PQITEGGLVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNY 631 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q ++ +P L IPILGALFR+ R++T + + P++++ A + D+ Y+ Sbjct: 632 QDSEQKVPGLGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRYNYMR 690 Query: 439 DAKAFF 444 + F Sbjct: 691 QTQQGF 696 >gi|152972270|ref|YP_001337416.1| outer membrane porin HofQ [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957119|gb|ABR79149.1| putative transport portein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 413 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + + + SG + ++D S F++ G Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNI-GK 239 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ E L ALER + +A P L A Q AS G + Y+ S +GATSV Sbjct: 240 INGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 299 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+ Sbjct: 300 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETL 359 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 360 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410 >gi|323135898|ref|ZP_08070981.1| general secretion pathway protein D [Methylocystis sp. ATCC 49242] gi|322398989|gb|EFY01508.1| general secretion pathway protein D [Methylocystis sp. ATCC 49242] Length = 817 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 69/300 (23%), Positives = 130/300 (43%), Gaps = 26/300 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++V+ L++ +QV L+ TIAEV+ + + G + + + S +A+ G + Sbjct: 509 RQVIETLDVM-PNQVFLEATIAEVKLNDTLRFGVRWFMQTHQNLFGFSSSANPAGPLPNT 567 Query: 242 GGDFSVKGVLDRFSF------------ETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 ++ G +F + L+AL T + + P+LT + + A Sbjct: 568 PLGTNLLGANVGANFPGFAYAFRAFNQQVTLNALNAITEVNVIQTPSLTVLDNRQAMLQV 627 Query: 290 GGQHLYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 G Q +T+SS SV + GV+L TP + GRI L ++ EVS Sbjct: 628 GDQIPVQTLSSVSAIGNQFNSVNYTNTGVILAITPHISESGRIMLELEQEVSNVDPNTPP 687 Query: 346 GDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 G + P+ + R+ T V + +++L GL+KD + IP+ +P+ G LF++ Sbjct: 688 GSITPTIQQRRVKTQVVVNDSESLMLGGLVKDQRGRAATQIPVAGDVPVFGNLFKDKGDA 747 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 ++TE+ I TP +V+ + D+ + ++ K + + G E + Sbjct: 748 VDKTELVIMITPHVVRSL--------DEGREITEEYKRKLLDISTRAIGRPHDIEQSARR 799 >gi|85712761|ref|ZP_01043805.1| Type II secretory pathway [Idiomarina baltica OS145] gi|85693401|gb|EAQ31355.1| Type II secretory pathway [Idiomarina baltica OS145] Length = 560 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 62/275 (22%), Positives = 107/275 (38%), Gaps = 22/275 (8%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + + ++ L + QV L+ I EV Q G + + S F Sbjct: 273 AVGQFLDNLQSRLQRQVILEARIVEVTLGDQYQQGIRWNELNMSGRFDFGFNGSVPNDIA 332 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + D + F L L+ +++ L+ P +TA + Q A G Y T Sbjct: 333 AATADGVFGLTFNSNRFTGFLELLQTQGSVQVLSNPRVTASNNQKAVIKIGEDEYYVTDV 392 Query: 300 SSTGATSVT------------THDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPV 340 +S T+VT G+ L TP + G + L + V Sbjct: 393 TSQTNTTVTQDALTSSNVDLTPFFSGISLDVTPQISDDGEVTLHVHPSVVETKEQEKVIT 452 Query: 341 IGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 IG +P +R++DT V SG +VL GL+++ + E +PLL +P++G LF Sbjct: 453 IGDETLRLPLARSNIRESDTIVRARSGEIVVLGGLMQNSTSENVEKVPLLGDLPLVGNLF 512 Query: 399 RNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDD 432 +N + + E+ I P ++ ++L R + Sbjct: 513 KNKSNDASKKELVILIKPTVIGADTWQKELERSRE 547 >gi|319639388|ref|ZP_07994138.1| type IV pilus biogenesis and competence protein pilQ [Neisseria mucosa C102] gi|317399283|gb|EFV79954.1| type IV pilus biogenesis and competence protein pilQ [Neisseria mucosa C102] Length = 710 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 106/269 (39%), Gaps = 30/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224 +K+++ L++ QV ++ I E + +G + G+S Sbjct: 438 RKLIDELDVPT-RQVMVEARIVEAEDTFFRNLGVKFGSGGASGRTAWGSNWSNAQANHNT 496 Query: 225 ----------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 P+ S + + ++ + + A E +T++ Sbjct: 497 NASFNRGDVGYPTWSLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISN 556 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + + A SG + Y+ SSS GATS+T + L TP + G+I + ++ Sbjct: 557 PRVLTQDRKEAKIESGTEIPYQEASSS-GATSITFKKAVLGLTVTPNITPDGQIIMTVKI 615 Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 P+ V++ + +T + GGT+++ G+ +++ +P+L IP+ Sbjct: 616 NRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVNKVPILGDIPV 675 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422 +G LF++ E+ I TP ++ V Sbjct: 676 VGNLFKSRGKRENRRELLIFITPRIMDNV 704 >gi|271501355|ref|YP_003334380.1| general secretion pathway protein D [Dickeya dadantii Ech586] gi|270344910|gb|ACZ77675.1| general secretion pathway protein D [Dickeya dadantii Ech586] Length = 713 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 66/317 (20%), Positives = 129/317 (40%), Gaps = 34/317 (10%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 T+++ G T++ + L T R+ ++V+N L+I QV + Sbjct: 351 SSGGRTIMIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 403 Query: 199 KVTIAEVRRDILKQIGFQHSIT------GSSSGPSKSFA----------ADFGGKFVSEG 242 + IAE++ +G Q + +++G S A + S Sbjct: 404 EAIIAEIQDADGLNLGIQWANNRAGMTQFTNTGIPISTAVIGTDQFRKDGTLTTAYASAL 463 Query: 243 GDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G F+ + R ++ ++ AL + LA P++ + A+F G + T S + Sbjct: 464 GSFNGITAGFYRGNWSMLMTALSSDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 523 Query: 302 TGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYR 352 T +V G+ L P + + L+I+ EVS ++ + ++ Sbjct: 524 TVGSGNNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSANSSLGVTFN 583 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + V + +G T+V+ GLL + +PLL IP+LG LFR+ + ++ + + Sbjct: 584 TRTVNNAVMVSNGETVVVGGLLDKSTDENNSKVPLLGDIPVLGNLFRSKSQSVKKRNLML 643 Query: 413 AATPFLVK-PVAMRDLS 428 P +++ P +D S Sbjct: 644 FLRPTIIRDPKQFQDAS 660 >gi|258625707|ref|ZP_05720586.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM603] gi|258581945|gb|EEW06815.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM603] Length = 571 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 60/266 (22%), Positives = 107/266 (40%), Gaps = 32/266 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++ L+I QV ++ I V+ L ++G + + S+ S S + Sbjct: 308 REIIESLDIP-VKQVQIEARIVTVKEGNLDELGVRWGV--MSTNGSHSVGGTIESNLWQQ 364 Query: 242 G--------------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 G F V + + L AL+ + ++ P Sbjct: 365 GLLAEDEFPVDEFLNVNLASASANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSP 424 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L + Q A G + Y SSS+GAT+V+ + L TP + R+ L + Sbjct: 425 RLITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVT 483 Query: 336 VSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+ Sbjct: 484 QDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPV 543 Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419 LGALFR + ++E+ I TP +V Sbjct: 544 LGALFRRTYEQMGKSELLIFVTPKVV 569 >gi|260770770|ref|ZP_05879699.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio furnissii CIP 102972] gi|260614007|gb|EEX39197.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio furnissii CIP 102972] gi|315178810|gb|ADT85724.1| general secretion pathway protein D [Vibrio furnissii NCTC 11218] Length = 675 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 63/328 (19%), Positives = 123/328 (37%), Gaps = 53/328 (16%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN-LLNIAGE-----DQVTLKVT 201 G + +QR + + N ++ + +MN +L++ + QV ++ Sbjct: 296 TGQKSSSGAAQRNEVMIAAH---ADTNSLVITAPQDIMNAILDVVAQLDIRRAQVLIEAL 352 Query: 202 IAEVRRDILKQIGFQHS-------ITGSSSGPSKSF------------------------ 230 I E+ +G Q I S+SG S Sbjct: 353 IVEMSEADGINLGVQWGSLESGSVIQYSNSGASIGSVMVGLEEAKDQTTTEYYYDSSGNR 412 Query: 231 -------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 + D+ + G + + ++ A+ + L+ P++T + Sbjct: 413 RPYTSTESGDYSSLASALSGINGAAVSVLMGDWTALISAVSSNSNTNILSSPSITVMDNG 472 Query: 284 SASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 ASF G + T S+S+ +V + G+ L P + + L I+ EVS Sbjct: 473 EASFIVGEEVPVITGSTSSSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLAIEQEVSN 532 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 V+G N + R+ +T+V + G +VL GL+ + + + +PLL IPI+G LF Sbjct: 533 -VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERTAESESKVPLLGDIPIIGHLF 591 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRD 426 ++ E+ + + P +++ D Sbjct: 592 SSTSTQVEKKNLMVFIKPTIIRNGVTAD 619 >gi|113869481|ref|YP_727970.1| general secretion pathway protein D [Ralstonia eutropha H16] gi|113528257|emb|CAJ94602.1| general secretion pathway protein D [Ralstonia eutropha H16] Length = 812 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 115/305 (37%), Gaps = 39/305 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVS 240 + V++ L+ A QV ++ I EV ++G Q + S G + FA G Sbjct: 426 RGVIDDLD-ARRAQVYIESMIVEVTSTQASELGIQWQGLISSPGGNNNVFAGTNFGTGGQ 484 Query: 241 EGGDFSVKGVLDRFS----------------------------FETVLHALERATAIRTL 272 + ++ G L + +L AL ++ L Sbjct: 485 NILNLTLAGALADSNRTAGIAAAQGLVQDIGGLNLGIVNKAMGLGALLRALGSNGSVNLL 544 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVT------THDYGVVLHFTPTVLS 324 + P L + + A G T S + GA SVT D G+ L P + Sbjct: 545 STPNLITLENEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITD 604 Query: 325 PGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G + ++I E S V N P+ VR +T V + G IVL GL++D + Sbjct: 605 GGLVKMQIFQESSNVVQATANLIQGPTTNVRSIETNVLVDDGQIIVLGGLIEDSYGDGVQ 664 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +PLL IP +G LFR NR +T + + P++++ D D + + + F Sbjct: 665 KVPLLGDIPWIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAADRLTQDRYDYMRAQQQGF 724 Query: 444 FFNRV 448 + Sbjct: 725 VSPNI 729 >gi|224823626|ref|ZP_03696735.1| type IV pilus secretin PilQ [Lutiella nitroferrum 2002] gi|224604081|gb|EEG10255.1| type IV pilus secretin PilQ [Lutiella nitroferrum 2002] Length = 691 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 13/244 (5%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS------------ITGSSSGPSKSFAADFGGKFVSE 241 QV ++ I E + +++G + S I G+ +G + + Sbjct: 447 KQVVIEARIVEATDNFSRELGVKLSYDRIGRLSLGGNIAGAGNGSLTDTLVNLPTNSAAT 506 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G +V L AL+ + + +A P + A+ G + Y+ +SS Sbjct: 507 GTIGAVYKAGASNLIGLELQALQTESQGKIVASPRVLTSDRTEATIEQGQEIPYQEATSS 566 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 GATS + + L P + I + IQ + +PS + +K +T V Sbjct: 567 -GATSTSFKKAVLSLKVKPQITPDSTILMDIQINNDTADFANLSNGVPSLKTKKVNTQVL 625 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +GGT+V+ G+ D + +PLL IP+LGALFR+ TE+ + TP +V Sbjct: 626 VENGGTVVIGGIYTQDENEGLSKVPLLGDIPLLGALFRSKTKKDNRTELLVFLTPRVVSD 685 Query: 422 VAMR 425 + Sbjct: 686 FDIN 689 >gi|261381191|ref|ZP_05985764.1| type IV pilus biogenesis protein PilQ [Neisseria subflava NJ9703] gi|284795810|gb|EFC51157.1| type IV pilus biogenesis protein PilQ [Neisseria subflava NJ9703] Length = 710 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 106/269 (39%), Gaps = 30/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224 +K+++ L++ QV ++ I E + +G + G+S Sbjct: 438 RKLIDELDVPT-RQVMVEARIVEAEDTFFRNLGVKFGSGGASGRNAWGSNWSNAQTNYNT 496 Query: 225 ----------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 P+ S + + ++ + + A E +T++ Sbjct: 497 NASFNRGDVRYPTWSLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISN 556 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + + A SG + Y+ SSS GATS+T + L TP + G+I + ++ Sbjct: 557 PRVLTQDRKEAKIESGTEIPYQEASSS-GATSITFKKAVLGLTVTPNITPDGQIIMTVKI 615 Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 P+ V++ + +T + GGT+++ G+ +++ +P+L IP+ Sbjct: 616 NRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPV 675 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422 +G LF++ E+ I TP ++ V Sbjct: 676 VGNLFKSRGKRENRRELLIFITPRIMDNV 704 >gi|259907443|ref|YP_002647799.1| General secretion pathway protein D [Erwinia pyrifoliae Ep1/96] gi|224963065|emb|CAX54548.1| General secretion pathway protein D [Erwinia pyrifoliae Ep1/96] gi|283477275|emb|CAY73191.1| Type II secretion system protein outD [Erwinia pyrifoliae DSM 12163] Length = 645 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 127/307 (41%), Gaps = 25/307 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN--------------LLNIA 191 VL G+ T+QD + S +++ + ++ ++N L+I+ Sbjct: 287 VLSGVSSTMQDKSESKTASPVAMTKDIVVKADTHTNSLIINAPPDVMGDLEEIITQLDIS 346 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSE--GGDFS 246 QV ++ I EV+ +G Q + G+ + + ++ G V+E Sbjct: 347 -RAQVQVEAIIVEVQDADGLALGVQWFNKNGGGTQFPAADAPVSNLIGSTVAETLSKANG 405 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + ++ + +AL+ + LA P++ + A FT G T S +T Sbjct: 406 LAAGFYHGNWAGLFNALQTNSQNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDG 465 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVE 361 SV G+ L P + + + I+ EVS + + ++ R TV Sbjct: 466 VFNSVDRKSVGIKLKVKPQINKGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNTVL 525 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + SG T+V+ GLL +++ +P+L KIP+LGALFR + + + + + P +++ Sbjct: 526 VESGKTVVVGGLLDTTHNKVESSVPVLGKIPLLGALFRYTTDKQSKRNLMLFIRPTIIRQ 585 Query: 422 VAMRDLS 428 D + Sbjct: 586 QDSFDRT 592 >gi|148360420|ref|YP_001251627.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila str. Corby] gi|296106514|ref|YP_003618214.1| type IV pilus assembly protein PilQ [Legionella pneumophila 2300/99 Alcoy] gi|148282193|gb|ABQ56281.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila str. Corby] gi|295648415|gb|ADG24262.1| type IV pilus assembly protein PilQ [Legionella pneumophila 2300/99 Alcoy] Length = 698 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 114/263 (43%), Gaps = 28/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------GSSSGPS-------- 227 ++++ L+I QV ++ I EV +D + IG + ++ G+ G + Sbjct: 421 RELIKQLDIP-VKQVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAP 479 Query: 228 -------KSFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276 + D ++ SV L + + + L ALE ++ P Sbjct: 480 ANVVPLERRLNLDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPR 539 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L + Q+A SG + Y+ +SS GAT+V + L TP + G+I + +Q Sbjct: 540 LITTNQQAAVIESGEEIPYQEATSS-GATAVAFKKAVLSLKVTPQITPDGKILMDLQINQ 598 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 P G +P+ ++ T V + +G TIVL G+ K D ++ IP ++P++G Sbjct: 599 DTPSPQTFLG-VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGI 657 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LF N + + E+ I TP ++ Sbjct: 658 LFSNRQITLKNEELLIFITPRII 680 >gi|262166650|ref|ZP_06034387.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus VM223] gi|262026366|gb|EEY45034.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus VM223] Length = 545 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I V+ L ++G + + ++ S Sbjct: 282 REIIESLDIP-VKQVQIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGL 340 Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + F V + + L AL+ + ++ P L Sbjct: 341 LAEDEFPVDEFLNVNLAAASTNASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 400 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A G + Y SSS+GAT+V+ + L TP + R+ L + Sbjct: 401 ITTNKQPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQD 459 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LG Sbjct: 460 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 519 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR + ++E+ I TP +V Sbjct: 520 ALFRRTYEQMGKSELLIFVTPKVV 543 >gi|257095715|ref|YP_003169356.1| type IV pilus secretin PilQ [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048239|gb|ACV37427.1| type IV pilus secretin PilQ [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 703 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 106/274 (38%), Gaps = 38/274 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----GSSSGPSKSFAADFGGK 237 + ++ +++A QV ++ I E K +G + G S A G + Sbjct: 425 RAIITKVDVA-ARQVMIEARIVEAGDSFAKNLGVRLGWNQRQGYQFGGQGASGTAMAGAR 483 Query: 238 FVSEGGDFSVKGVLDRFS--------------------------------FETVLHALER 265 + G + + F+ T + ALE Sbjct: 484 ANTPGFYTTQVRDIPNFNTDAFNVNLPATPRTGNAGLFSLVLYNSALTQFLNTEISALEA 543 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + ++ P + + A G + Y+ +SS GATSV+ + L TP + Sbjct: 544 DGRGKVISSPRVMTANNIEALIEQGVEIPYQQATSS-GATSVSFKKAVLSLKVTPQITPD 602 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G + ++++ P +N G + + T V + +GGT+V+ G+ +++ + I Sbjct: 603 GNVTMKVEVNKDTPNTRLNTGAGVAIDNKHVKTEVLVENGGTVVIGGIYTQEVRNNTQRI 662 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P +P +G LF++ + ++ E+ I TP +V Sbjct: 663 PFFGDLPYIGWLFKSREWIDDKQELLIFITPRIV 696 >gi|113869383|ref|YP_727872.1| pili assembly protein PilQ [Ralstonia eutropha H16] gi|113528159|emb|CAJ94504.1| pili assembly protein PilQ [Ralstonia eutropha H16] Length = 706 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 101/257 (39%), Gaps = 23/257 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------S 222 + + ++I QV ++ I E + +G + G S Sbjct: 447 QNFIGKIDIP-VRQVIIEARIVEATDSFSRNLGVKLGFAGQYNNARVGNTYNNVLPGATS 505 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 +GP S A S+ L ALE + ++ P + + Sbjct: 506 DNGPFLSLPAGAINGTNPANIAVSLFNSAATKFLALELSALEADGKGKIISSPRVVTANN 565 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A G + Y+ +SS GATSV + L TP + G + L + +V++ +G Sbjct: 566 IKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVTPQITPEGNVLLDV--DVNKDSVG 622 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + + T V + +GGT+V+ G+ + +PLL IP+LG LF+N+ Sbjct: 623 IQTTSGFAIDTKHVQTQVLVENGGTVVIGGIYTQTESNETDKVPLLGDIPVLGYLFKNNA 682 Query: 403 FNREETEIFIAATPFLV 419 R TE+ + TP ++ Sbjct: 683 KVRNRTELLVFLTPRIL 699 >gi|241668668|ref|ZP_04756246.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877201|ref|ZP_05249911.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843222|gb|EET21636.1| type IV pili secretin component [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 587 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 102/259 (39%), Gaps = 20/259 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V+N ++I DQV ++ I EV+R ++GF + ++ S + D + Sbjct: 334 RNVINEIDIPN-DQVLIEARIVEVQRTSGLELGFNYGVSHPSG---LNVGLDTFRNPTPK 389 Query: 242 GGDFSVK----------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G+ + E + ALE + ++ P L + ++A G Sbjct: 390 PGETDTSVVASTARLAYTLAGGLQLEMEIRALENESLANLVSSPHLVVSNNETAFIKDGK 449 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--- 348 Y+ ++S GA SV + + L TP + G I + + + Sbjct: 450 DVPYQQATAS-GAASVAFQEAVLELQVTPQIAPDGNIVMEVLVTKNSVGASSGKTSTGED 508 Query: 349 --PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P R+ T V + T+V+ G+ + + + IP L IP LG LF ++ Sbjct: 509 LPPIINKREVTTKVMVKDSETVVIGGIYTKEQTETRNKIPFLGDIPYLGYLFSYTKIEDR 568 Query: 407 ETEIFIAATPFLVKPVAMR 425 + E+ I TP +++ + Sbjct: 569 DAELLIFITPKIIESKVQK 587 >gi|15642625|ref|NP_232258.1| fimbrial assembly protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587503|ref|ZP_01677270.1| fimbrial assembly protein [Vibrio cholerae 2740-80] gi|121727577|ref|ZP_01680685.1| fimbrial assembly protein [Vibrio cholerae V52] gi|147673064|ref|YP_001218123.1| fimbrial assembly protein [Vibrio cholerae O395] gi|153217486|ref|ZP_01951197.1| fimbrial assembly protein [Vibrio cholerae 1587] gi|153820291|ref|ZP_01972958.1| fimbrial assembly protein [Vibrio cholerae NCTC 8457] gi|153821537|ref|ZP_01974204.1| fimbrial assembly protein [Vibrio cholerae B33] gi|153830200|ref|ZP_01982867.1| fimbrial assembly protein [Vibrio cholerae 623-39] gi|227082746|ref|YP_002811297.1| fimbrial assembly protein [Vibrio cholerae M66-2] gi|254851169|ref|ZP_05240519.1| fimbrial assembly protein [Vibrio cholerae MO10] gi|298500547|ref|ZP_07010351.1| fimbrial assembly protein [Vibrio cholerae MAK 757] gi|9657220|gb|AAF95771.1| fimbrial assembly protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548234|gb|EAX58302.1| fimbrial assembly protein [Vibrio cholerae 2740-80] gi|121630068|gb|EAX62473.1| fimbrial assembly protein [Vibrio cholerae V52] gi|124113543|gb|EAY32363.1| fimbrial assembly protein [Vibrio cholerae 1587] gi|126509166|gb|EAZ71760.1| fimbrial assembly protein [Vibrio cholerae NCTC 8457] gi|126520922|gb|EAZ78145.1| fimbrial assembly protein [Vibrio cholerae B33] gi|146314947|gb|ABQ19486.1| fimbrial assembly protein [Vibrio cholerae O395] gi|148874303|gb|EDL72438.1| fimbrial assembly protein [Vibrio cholerae 623-39] gi|227010634|gb|ACP06846.1| fimbrial assembly protein [Vibrio cholerae M66-2] gi|227014518|gb|ACP10728.1| fimbrial assembly protein [Vibrio cholerae O395] gi|254846874|gb|EET25288.1| fimbrial assembly protein [Vibrio cholerae MO10] gi|297540716|gb|EFH76773.1| fimbrial assembly protein [Vibrio cholerae MAK 757] Length = 578 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I V+ L+++G + + ++ S Sbjct: 315 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGL 373 Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + F V + + L AL+ + ++ P L Sbjct: 374 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 433 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A G + Y SSS+GA++V + L TP + R+ L + Sbjct: 434 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 492 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LG Sbjct: 493 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 552 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR + ++E+ I TP +V Sbjct: 553 ALFRRTYEQMGKSELLIFVTPKVV 576 >gi|296103142|ref|YP_003613288.1| general secretion pathway protein D [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057601|gb|ADF62339.1| general secretion pathway protein D [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 642 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 62/272 (22%), Positives = 110/272 (40%), Gaps = 18/272 (6%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGG 236 +S +KV++ L+I QV ++ IAEV+ +G Q + G G + + Sbjct: 328 NSLEKVIDKLDIRRP-QVLVEAIIAEVQDGNGMDLGVQWTGKHGGVQFGSTGLPISQVKN 386 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295 + + + +L AL + L+ P++ + + ASF G Sbjct: 387 GTIKGASFTGLATGFFNGDYGALLTALSTSGKNDILSTPSVVTLDNKEASFNVGQDVPVL 446 Query: 296 ---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPS 350 +T S SV G L P + I L+I+ EVS A P+ Sbjct: 447 SGSQTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDASATEDASLGPT 506 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+VL GL+++ +Q +PLL +P++G LFR + + + + Sbjct: 507 FNTRTINNEVMVHSGQTVVLGGLMENVSKQNVSKVPLLGDLPLVGQLFRYTSEDTSKRNL 566 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + +++ DD+YS K Sbjct: 567 MVFIHTTVLRD---------DDNYSAATKEKY 589 >gi|313291988|gb|ADR51186.1| general secretion pathway protein D [Aeromonas veronii] Length = 679 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 24/269 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--- 235 S ++V+ L+I QV ++ I E++ +G Q + G Sbjct: 335 SELEQVVAKLDIR-RAQVLVEAIIVEMQDGDGLSLGVQWGNANGGGTQFTNSGLPLGSAI 393 Query: 236 --GKFVSEGGDFSVKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQ 283 GK G + G+L F+ + + AL T L+ P++ + + Sbjct: 394 AAGKDYQNGKTDTAAGLLKEFNGMAAGFYHGDWAMLATALASNTKNDILSTPSIVTMDNK 453 Query: 284 SASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 ASF G + ++ S S+ ++ G L TP + + L I+ EVS Sbjct: 454 EASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLNIEQEVSS 513 Query: 339 PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 G P++ R V + SG T+VL GL+ + ++ +PLL IP+LG Sbjct: 514 VAQTQATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQVSKVPLLGDIPVLG 573 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424 LFR++ + + + P +++ + Sbjct: 574 YLFRSTSNTTSKRNLMVFIRPTILRDADV 602 >gi|56459478|ref|YP_154759.1| Type II secretory pathway [Idiomarina loihiensis L2TR] gi|56178488|gb|AAV81210.1| Type II secretory pathway [Idiomarina loihiensis L2TR] Length = 557 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 69/269 (25%), Positives = 111/269 (41%), Gaps = 30/269 (11%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + +L + QV L+ I EV + Q G S S + F DF G S Sbjct: 274 ITVLESRLQRQVILEARIIEVTLNDGYQQGINWSDIYS---GNAGFGVDFNGVTPSNATS 330 Query: 245 FSVKGVL------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297 ++ G+ D +F ++ L+ ++ L+ P ++A + Q A G + T Sbjct: 331 AAIGGLFGLTYTDDGNNFSGMIEMLQTQGTVQVLSNPRVSASNNQKAVIKIGEDEYFVTD 390 Query: 298 -----------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVI 341 SSS T G+ L TP + G + L + V E VI Sbjct: 391 VTSRTVLNTGGASSSDSDIEFTPFFSGISLDVTPQISDDGEVILHVHPSVVETSEQEKVI 450 Query: 342 GVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 V+ + + +R++DT V+ +G +VL GL++ + +PLL IP+LG L Sbjct: 451 TVSGEESVLPLARSNIRESDTIVKARNGEIVVLGGLMQTTNSEEVGKVPLLGDIPLLGEL 510 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426 F N R +E+ E+ I P +V RD Sbjct: 511 FTNRRNRQEKKELVILLKPTVVGVDTWRD 539 >gi|331006529|ref|ZP_08329826.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC1989] gi|330419665|gb|EGG94034.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC1989] Length = 678 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 6/241 (2%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKF 238 K ++N +++ QV ++ I +++ GF + +S+ + + F Sbjct: 434 KSLINKVDVP-VRQVMIEARIVSATDTFMEEFGFFVGASDTSTANNPNLTTSALSDATVF 492 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G V V + S + ALE + +++P + Q+A +SG Q + Sbjct: 493 NPVGSVLDVSYVSNGVSLALEIQALEDSGYGEVVSQPRVLTGDKQTAKISSGQQIPF--T 550 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 SS + D + L TP + RI + ++ V + T Sbjct: 551 SSDGDTVTTIFQDAVLSLEVTPQITPDNRIIMELKVNRDSLDTSTVTVSGSPINVTELTT 610 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 T + G TIVL G+ + +P+L IP+LG LF ++ + TE+ I TP + Sbjct: 611 TALVGDGDTIVLGGIYEQTKTSSVSKVPVLGDIPVLGRLFTSNTDQDDRTELLIFITPRI 670 Query: 419 V 419 + Sbjct: 671 L 671 >gi|254225379|ref|ZP_04918990.1| fimbrial assembly protein [Vibrio cholerae V51] gi|125622013|gb|EAZ50336.1| fimbrial assembly protein [Vibrio cholerae V51] Length = 578 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I V+ L+++G + + ++ S Sbjct: 315 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGL 373 Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + F V + + L AL+ + ++ P L Sbjct: 374 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 433 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A G + Y SSS+GA++V + L TP + R+ L + Sbjct: 434 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 492 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LG Sbjct: 493 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 552 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR + ++E+ I TP +V Sbjct: 553 ALFRRTYEQMGKSELLIFVTPKVV 576 >gi|330012388|ref|ZP_08307367.1| type IV pilus secretin PilQ [Klebsiella sp. MS 92-3] gi|328533849|gb|EGF60524.1| type IV pilus secretin PilQ [Klebsiella sp. MS 92-3] Length = 408 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + + + SG + ++D S F++ G Sbjct: 176 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNI-GK 234 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ E L ALER + +A P L A Q AS G + Y+ S +GATSV Sbjct: 235 INGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 294 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+ Sbjct: 295 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETL 354 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 355 ALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 405 >gi|255067346|ref|ZP_05319201.1| type IV pilus biogeneis protein PilQ [Neisseria sicca ATCC 29256] gi|255048497|gb|EET43961.1| type IV pilus biogeneis protein PilQ [Neisseria sicca ATCC 29256] Length = 711 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 57/269 (21%), Positives = 112/269 (41%), Gaps = 30/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------------- 222 +K+++ L++ QV ++ I E + + +G + G+ Sbjct: 439 RKLIDELDVPT-RQVMVEARIVEAKDGFSRDLGVKFGAAGARGRNSWGNDWSAAQNNHNT 497 Query: 223 --------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 S+ P+ S + + ++ L + + A E +T++ Sbjct: 498 NASVFRGESAYPTWSLQPNVSLPATAATNSIALVRALSSGALGLEISASEATGKSKTISN 557 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + + A+ SG + Y+ SSS GATSV+ + L TP V G+I + ++ Sbjct: 558 PRVLTQDRREATIESGTEIPYQEASSS-GATSVSFKKAVLGLTVTPNVTPDGQIIMTVKI 616 Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 PV V++ + + +T + GGT+++ G+ ++D +PLL IP+ Sbjct: 617 TKDTPVDCTVDSLITKCIQTKNLNTQAMVEDGGTLIVGGIYEEDNSDTINKVPLLGDIPV 676 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422 +G LF++ E E+ I TP ++ V Sbjct: 677 VGNLFKSRAKKEERRELLIFITPRIMDGV 705 >gi|310765060|gb|ADP10010.1| General secretion pathway protein D [Erwinia sp. Ejp617] Length = 645 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 127/307 (41%), Gaps = 25/307 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN--------------LLNIA 191 VL G+ T+QD + S +++ + ++ ++N L+I+ Sbjct: 287 VLSGVSSTMQDKSESKTASPVAMTKDIVVKADTHTNSLIINAPPDVMGDLEEIITQLDIS 346 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSE--GGDFS 246 QV ++ I EV+ +G Q + G+ + + ++ G V+E Sbjct: 347 -RAQVQVEAIIVEVQDADGLALGVQWFNKNGGGTQFPAADAPVSNLIGSTVAETLSKANG 405 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + ++ + +AL+ + LA P++ + A FT G T S +T Sbjct: 406 LAAGFYHGNWAGLFNALQTNSQNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDG 465 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVE 361 SV G+ L P + + + I+ EVS + + ++ R TV Sbjct: 466 VFNSVDRKSVGIKLKVKPQINKGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNTVL 525 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + SG T+V+ GLL +++ +P+L KIP+LGALFR + + + + + P +++ Sbjct: 526 VESGKTVVVGGLLDTTHNKVESSVPVLGKIPLLGALFRYTTDKQSKRNLMLFIRPTIIRQ 585 Query: 422 VAMRDLS 428 D + Sbjct: 586 QDSFDRT 592 >gi|254285824|ref|ZP_04960786.1| fimbrial assembly protein [Vibrio cholerae AM-19226] gi|150424006|gb|EDN15945.1| fimbrial assembly protein [Vibrio cholerae AM-19226] Length = 578 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I V+ L+++G + + ++ S Sbjct: 315 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGL 373 Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + F V + + L AL+ + ++ P L Sbjct: 374 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 433 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A G + Y SSS+GA++V + L TP + R+ L + Sbjct: 434 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 492 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LG Sbjct: 493 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 552 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR + ++E+ I TP +V Sbjct: 553 ALFRRTYEQMGKSELLIFVTPKVV 576 >gi|330830590|ref|YP_004393542.1| general secretion pathway protein D [Aeromonas veronii B565] gi|328805726|gb|AEB50925.1| General secretion pathway protein D [Aeromonas veronii B565] Length = 679 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 24/269 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--- 235 S ++V+ L+I QV ++ I E++ +G Q + G Sbjct: 335 SELEQVVAKLDIR-RAQVLVEAIIVEMQDGDGLSLGVQWGNANGGGTQFTNSGLPLGSAI 393 Query: 236 --GKFVSEGGDFSVKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQ 283 GK G + G+L F+ + + AL T L+ P++ + + Sbjct: 394 AAGKDYQNGKTDTAAGLLKEFNGMAAGFYHGDWAMLATALASNTKNDILSTPSIVTMDNK 453 Query: 284 SASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 ASF G + ++ S S+ ++ G L TP + + L I+ EVS Sbjct: 454 EASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLNIEQEVSS 513 Query: 339 PVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 G P++ R V + SG T+VL GL+ + ++ +PLL IP+LG Sbjct: 514 VAQTQATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQVSKVPLLGDIPVLG 573 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424 LFR++ + + + P +++ + Sbjct: 574 YLFRSTSNTTSKRNLMVFIRPTILRDADV 602 >gi|194290974|ref|YP_002006881.1| fimbrial type IV assembly protein pilq precursor [Cupriavidus taiwanensis LMG 19424] gi|193224809|emb|CAQ70820.1| Fimbrial type IV assembly protein pilQ precursor [Cupriavidus taiwanensis LMG 19424] Length = 710 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 101/257 (39%), Gaps = 23/257 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------S 222 + + ++I QV ++ I E + +G + G S Sbjct: 451 QSFIGKIDIP-VRQVIIEARIVEATDTFSRNLGVKLGFAGQYNNARVGNTYNNVLPGATS 509 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 +GP S A S+ L ALE + ++ P + + Sbjct: 510 DNGPFLSLPAGSINGTNPANIAVSLFNSAATRFLALELSALEADGKGKIISSPRVVTANN 569 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A G + Y+ +SS GATSV + L TP + G + L + +V++ +G Sbjct: 570 IKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVTPQITPEGNVLLDV--DVNKDSVG 626 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + + T V + +GGT+V+ G+ + +PLL IP+LG LF+N+ Sbjct: 627 IQTTSGFAIDTKHVQTQVLVENGGTVVIGGIYTQTESTDVDKVPLLGDIPVLGYLFKNNA 686 Query: 403 FNREETEIFIAATPFLV 419 R TE+ + TP ++ Sbjct: 687 KVRNRTELLVFLTPRIL 703 >gi|297581470|ref|ZP_06943393.1| fimbrial assembly protein [Vibrio cholerae RC385] gi|297534308|gb|EFH73146.1| fimbrial assembly protein [Vibrio cholerae RC385] Length = 578 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I V+ L+++G + + ++ S Sbjct: 315 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGL 373 Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + F V + + L AL+ + ++ P L Sbjct: 374 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 433 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A G + Y SSS+GA++V + L TP + R+ L + Sbjct: 434 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 492 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LG Sbjct: 493 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 552 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR + ++E+ I TP +V Sbjct: 553 ALFRRTYEQMGKSELLIFVTPKVV 576 >gi|325124244|gb|ADY83767.1| putative general secretion pathway protein [Acinetobacter calcoaceticus PHEA-2] Length = 756 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 116/310 (37%), Gaps = 45/310 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV Q+G Q ++ +SG + G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGKDADQLGVQWALGDINSGIGLINFTNAGSSLASL 440 Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278 + G S + ++ AL+ TA L+ P++ Sbjct: 441 AAGYLTGGASGLGSAIGAGSSIALGKYKEGADGSRQLYGALIQALKENTASNLLSTPSIV 500 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + A G + T S +T +T +V D GV L P + G + L I Sbjct: 501 TMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGENGTVRLEI 560 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + EVS R T V G T+VL GL+ DD++ ++GIP LS IP Sbjct: 561 EQEVSNVQASKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVEFNRQGIPGLSSIP 620 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 LG LFR+ + + + + P +V +D + R +++Y Sbjct: 621 YLGRLFRSDTRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYSQLY 665 Query: 453 GPKEASEVEG 462 + A + G Sbjct: 666 SLQLAMDKNG 675 >gi|254429436|ref|ZP_05043143.1| Bacterial type II and III secretion system protein [Alcanivorax sp. DG881] gi|196195605|gb|EDX90564.1| Bacterial type II and III secretion system protein [Alcanivorax sp. DG881] Length = 384 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 101/430 (23%), Positives = 161/430 (37%), Gaps = 82/430 (19%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 + A + + A V N D+ + + +L P V V SDP A + Sbjct: 3 GAAWAVMATLLWLTATVSNAQDL----TDSMRLAPGDQKVLTFPAAVSKVATSDPGVAAL 58 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + L K Sbjct: 59 TVTGSAELLLTAK----------------------------------------------- 71 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + VL +R R+ + T L + + QV Sbjct: 72 -AEGSAVLSVWLRNSSKPLRSTVVVATTLGDA------------------LPFGTQVQTD 112 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEGGDFSVKGVLDRF 254 + + EV R L Q+G +S + + + AA G + G Sbjct: 113 IRVLEVSRSELNQLGMSYSNSFNGGQSAVGIAAPGSGFQVPGAVPTPLGTEGFNLFGFGA 172 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + ++ALE TLAEP+LT++SGQSASF SGG+ T S++ G + ++G+ Sbjct: 173 NSVLAINALEAGGFAYTLAEPSLTSLSGQSASFLSGGEFPVPTRSTTDG-VQIEFKEFGI 231 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVL 370 L TPTV+ +I L++ EVSE +P RVR+A+TTV L G T ++ Sbjct: 232 GLSLTPTVIDKSQIILKVAPEVSELDFSAGVETGGVAVPGLRVRRAETTVSLAPGETFII 291 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LS 428 +GL+ + + +P + IP+LGA FR+SR +++ E+ + TP LV P ++ Sbjct: 292 SGLVSRNTINSSDRLPGIGNIPLLGAFFRSSRIQKDDKELVMVVTPHLVTPQEATSPPVT 351 Query: 429 RPDDHYSVED 438 P Y Sbjct: 352 LPGAGYHSSS 361 >gi|319785509|ref|YP_004144985.1| general secretion pathway protein D [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171397|gb|ADV14935.1| general secretion pathway protein D [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 707 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 112/261 (42%), Gaps = 14/261 (5%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ +++ QV L+ IAEV + + G + + K V+ Sbjct: 427 EQILSKVDVL-PTQVMLEAVIAEVTLNDDLKYGLRW----FFENGGMKISVSDVAKGVAA 481 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299 + + L+AL T + ++ PT+ A++ Q A G Q T Sbjct: 482 AALPGFNWSYATDNIQVTLNALSSITDVNVISAPTIMALNNQKAVLQVGDQVPIATRQVV 541 Query: 300 ----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVR 354 S+ SV D GV+L TP + + GR+ L I+ EVS ++G D P+ + R Sbjct: 542 DQTLGSSPVVSVEMKDTGVILTVTPRINNAGRVMLDIEQEVSNVTKTTSSGIDSPTIQQR 601 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 K T V + G ++ L GL++ + +P+L IPI+G F+ + TE+ I Sbjct: 602 KIQTRVLVNDGESLALGGLIQSRNNVDRTQVPILGDIPIIGNAFKQKTDSIGRTELIIFI 661 Query: 415 TPFLVKPVAMRDLSRPDDHYS 435 P +V+ + + D + Sbjct: 662 RPHVVR--DINEAREVTDEFR 680 >gi|332851464|ref|ZP_08433461.1| general secretion pathway protein D [Acinetobacter baumannii 6013150] gi|332866854|ref|ZP_08437241.1| general secretion pathway protein D [Acinetobacter baumannii 6013113] gi|332729917|gb|EGJ61248.1| general secretion pathway protein D [Acinetobacter baumannii 6013150] gi|332734382|gb|EGJ65503.1| general secretion pathway protein D [Acinetobacter baumannii 6013113] Length = 758 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 69/312 (22%), Positives = 117/312 (37%), Gaps = 47/312 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440 Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276 + L+ +F+ ++ AL+ T L+ P+ Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLELGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S +T +T +V D GV L P + G + L Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD ++GIP LS Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 IP +G LFR+ + + + + P +V +D + R N+ Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQ 665 Query: 451 IYGPKEASEVEG 462 +Y + A + G Sbjct: 666 LYSLQLAMDKNG 677 >gi|261254112|ref|ZP_05946685.1| type IV pilus biogenesis protein PilQ [Vibrio orientalis CIP 102891] gi|260937503|gb|EEX93492.1| type IV pilus biogenesis protein PilQ [Vibrio orientalis CIP 102891] Length = 563 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 107/257 (41%), Gaps = 21/257 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 +++++ L+I QV ++ I V L ++G + ++ S Sbjct: 307 QELISALDIP-VKQVQIEARIVTVHEGNLDELGVRWGYHNTNGSTSLGSSIEDNVFGAVP 365 Query: 230 ----FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + V+ F V + + L AL+R + ++ P L + + Sbjct: 366 IDDMLNVNLAATSVNASSIAFQVAKLGSDMLLDLELSALQRESKAEVISSPRLITTNKKP 425 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIG 342 A G + Y SSS+GATSV + L P + R+ L + P ++ Sbjct: 426 AYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVVPQITPDNRLVLDLSVTQDRPGDIVK 484 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G+ + ++ T V + +G T+VL G+ + + + +P+L +P+LGALFR + Sbjct: 485 TGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHSVTDAVDKVPMLGDLPLLGALFRRTY 544 Query: 403 FNREETEIFIAATPFLV 419 ++E+ I TP +V Sbjct: 545 QKMGKSELLIFVTPKVV 561 >gi|293610078|ref|ZP_06692379.1| predicted protein [Acinetobacter sp. SH024] gi|292827310|gb|EFF85674.1| predicted protein [Acinetobacter sp. SH024] Length = 758 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 118/312 (37%), Gaps = 47/312 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 + + L++ QV ++ I EV D Q+G Q ++ SSG ++ G S Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440 Query: 241 -----------------------EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPT 276 G ++ + R ++ ++ AL+ T L+ P+ Sbjct: 441 AAGYLSGGSAGAASAIAGGANKGNGATLALGNFENSRKAYGALIQALKTNTKSNLLSTPS 500 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGL 330 + + + A G + T S +T +T +V D GV L P + G + L Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ EVS R T V G T+VL GL+ DD ++GIP LS Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 IP +G LFR+ + + + + P +V +D + R ++ Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV---------------GDANDVRRLSQQRYSQ 665 Query: 451 IYGPKEASEVEG 462 +Y + A + G Sbjct: 666 LYSLQLAMDKNG 677 >gi|187476847|ref|YP_784871.1| general secretion pathway protein D [Bordetella avium 197N] gi|115421433|emb|CAJ47938.1| general secretion pathway protein D [Bordetella avium 197N] Length = 860 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 80/318 (25%), Positives = 125/318 (39%), Gaps = 32/318 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSF---------- 230 + V++ L+ QV ++ I EV D + G Q + G+ + S SF Sbjct: 404 RTVIDQLDQR-RAQVLVESMIVEVSEDKASEFGIQWMTGAGNINSNSTSFIGGTNLGGSG 462 Query: 231 --------AADFGGKFVSEGGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAI 280 + D GK +S G VL + + A+++ L+ P L + Sbjct: 463 LGGVQGPTSLDVLGKGLSLGVVKGTVDVLGNKVINLGVLARAMQKDGEANILSTPNLLTL 522 Query: 281 SGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 QSAS G + T SS ++ D G+ L+ P + G + L I Sbjct: 523 DNQSASILVGKTVPFVTGQYVTSGGNGSSNPFQTIEREDVGLKLNIRPQISEGGAVKLDI 582 Query: 333 QTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS A R DT+V + G IVL GLL+D + Q G+P LS I Sbjct: 583 YQEVSSIDTSNSTAVSGVVTNKRAIDTSVLVEDGQIIVLGGLLEDSVSQGANGVPGLSSI 642 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 PILGALFR +T + + P++V+ R S D Y +A + + Sbjct: 643 PILGALFRYDSRRHTKTNLMVFLRPYVVRD-NRRAASLTMDRYDYMRRQQAASQPEAHWL 701 Query: 452 YGPKEASEVEGQNYKGAI 469 + E+ +G++ Sbjct: 702 LPQVQTPELTPPGSRGSV 719 >gi|330889718|gb|EGH22379.1| general secretion pathway protein D [Pseudomonas syringae pv. mori str. 301020] Length = 680 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 64/308 (20%), Positives = 116/308 (37%), Gaps = 21/308 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206 G + + ++ S + + K++ + + QV ++ I EV Sbjct: 360 GANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 419 Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258 +G Q + +SG + + G + G ++ F + + Sbjct: 420 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 479 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312 L ALE + L+ P+L ++ Q A G S++T +SV Sbjct: 480 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 539 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIV 369 GV+L P + G + + IQ +VS D P R T V SG T++ Sbjct: 540 GVILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSGQTVL 599 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GL+K D + +P L +IP L LF ++ ++ TE+ + TP ++ + + Sbjct: 600 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQ 657 Query: 430 PDDHYSVE 437 D Y + Sbjct: 658 VTDDYRQQ 665 >gi|229507318|ref|ZP_04396823.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae BX 330286] gi|229509758|ref|ZP_04399239.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae B33] gi|229513553|ref|ZP_04403017.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TMA 21] gi|229516883|ref|ZP_04406329.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC9] gi|229521696|ref|ZP_04411114.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TM 11079-80] gi|229606824|ref|YP_002877472.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae MJ-1236] gi|262158485|ref|ZP_06029600.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae INDRE 91/1] gi|262170121|ref|ZP_06037810.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC27] gi|229341290|gb|EEO06294.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TM 11079-80] gi|229345946|gb|EEO10918.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC9] gi|229349430|gb|EEO14386.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TMA 21] gi|229353232|gb|EEO18171.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae B33] gi|229354823|gb|EEO19744.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae BX 330286] gi|229369479|gb|ACQ59902.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae MJ-1236] gi|262021529|gb|EEY40241.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC27] gi|262029646|gb|EEY48295.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae INDRE 91/1] Length = 571 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I V+ L+++G + + ++ S Sbjct: 308 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGL 366 Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + F V + + L AL+ + ++ P L Sbjct: 367 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 426 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A G + Y SSS+GA++V + L TP + R+ L + Sbjct: 427 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 485 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LG Sbjct: 486 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 545 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR + ++E+ I TP +V Sbjct: 546 ALFRRTYEQMGKSELLIFVTPKVV 569 >gi|258592161|emb|CBE68468.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 764 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 68/282 (24%), Positives = 113/282 (40%), Gaps = 40/282 (14%) Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------------S 222 A + + ++I QV ++ I E R + +G Q TG Sbjct: 481 AVERMEAFLKQIDIPTP-QVLIEARIVEATRKFSQSLGIQWGGTGIPTKSGSGTGATVFG 539 Query: 223 SSGPSKSFAADFGGKFVSEGG---------------------DFSVKGVLDRFSFETVLH 261 + S F + G + GG ++ + +RF L Sbjct: 540 GTTNSLQFPTNSGLPTTTGGGIPFGSVPLALNLPATSPHLAIGMTIGSLANRFLVGAQLS 599 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 E IRTL+ P + + A G Q Y T+ ++G T V D + L P Sbjct: 600 VAENQGKIRTLSSPRVATQDNEEAEIKQGTQVPYTTI-DASGRTVVQFQDAFIKLKVKPH 658 Query: 322 VLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 + GR+ ++++ E S P VN G + RKA T + + +G T+V+ GLL+ Sbjct: 659 ITPDGRVAMKVEAERSFPGQQVNFSGGFVFPINTRKATTNIMVQNGSTVVIGGLLQSSET 718 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREET-EIFIAATPFLVK 420 + + +P+L IPILG LF+ +E E+ I TP +++ Sbjct: 719 IISDQVPVLGDIPILGWLFKRRAIGPDERVELLIFLTPSVLQ 760 >gi|292489895|ref|YP_003532785.1| protein transport protein hofQ [Erwinia amylovora CFBP1430] gi|291555332|emb|CBA23681.1| Protein transport protein hofQ precursor [Erwinia amylovora CFBP1430] gi|312174079|emb|CBX82332.1| Protein transport protein hofQ precursor [Erwinia amylovora ATCC BAA-2158] Length = 414 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 135/314 (42%), Gaps = 31/314 (9%) Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI--QDSQRAVELSETFLSQSGR 173 + D A + +L+ R+ ++ L ++ +D+++A+ +E ++ Q Sbjct: 123 VHADAASVNTSLQS----ERARLMSARGSITLDSRTNSLLLRDTEKALAQTEHWVRQ--- 175 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKS 229 L++ E Q+ L I + + L+++G ++G + + + Sbjct: 176 --------------LDVPLE-QIELAAQIVTMSEESLRELGVTWGMSGEAQVADALRTSQ 220 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 D + ++ LD E L ALE +A P L Q+AS Sbjct: 221 LRVDLASGRPAGVAGLTLA-KLDGRLLELELSALESEHQADIIASPRLFTSHQQTASIKQ 279 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347 G + Y+ + ++G+T++ + + + TP V S GRI L++ + P + +G+ Sbjct: 280 GTEIPYEVSTGNSGSTTMEFKEAMLAMEVTPLVQSNGRILLKLHISQNVPGRNMRSGENE 339 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ DT V L G T+ L G+ + +P L IP+LG+LFR+ ++ Sbjct: 340 VLTIDKQEIDTQVMLKDGQTLALGGIFQQQSATGSTRVPWLGDIPLLGSLFRHDVRQQKR 399 Query: 408 TEIFIAATPFLVKP 421 E+ I TP LV+ Sbjct: 400 RELVIFITPRLVRD 413 >gi|254784514|ref|YP_003071942.1| general secretion pathway protein D [Teredinibacter turnerae T7901] gi|237684660|gb|ACR11924.1| general secretion pathway protein D [Teredinibacter turnerae T7901] Length = 661 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 70/370 (18%), Positives = 136/370 (36%), Gaps = 47/370 (12%) Query: 105 DGKQMLNLDILI---ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 D Q+ ++ + E A T+ + + ++ D G R + Sbjct: 255 DRPQLQTGNVRVVYLEYATAKDVATVLSKVVQNMAKMTPGGDK----GAARQGATVEADE 310 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + ++ G A + V++ L+I QV ++ I E+ + +G Sbjct: 311 ATNSLLITAEGDQLDAIMA---VVDRLDIR-RAQVLVEAIIVEMTLGDKESLGIDWMFKN 366 Query: 222 SSSG-------------------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256 ++ G + GG S+G V G F Sbjct: 367 ATQGLIGASTAGGTGAAGVAAALFGGAEDAAAQLLTALGG---SDGQTLGVAGESGGEDF 423 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGAT----SVT 308 +++ L+ + L+ PTL + A + G + T S G T ++ Sbjct: 424 LVLVNMLQSNSNANILSTPTLLTMDNNEAMISVGQNVPFVTGSFTNAGGNGGTNPFQTIQ 483 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 D G+ L TP V ++ L IQ E+S + RK +T V I Sbjct: 484 RQDVGITLTVTPHVNEGDKVILDIQQEISSVSEEAGSASDVITNQRKVETQVMAKDRSVI 543 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 VL GL++D++Q+ + +P+L IP++G LFR++ ++ + I P +++ + + Sbjct: 544 VLGGLIRDELQKSENRVPVLGSIPVMGRLFRSNSETLRKSNLMIFIRPTIIRDDETLEGA 603 Query: 429 RPDDHYSVED 438 + + + D Sbjct: 604 TAEKYTYIRD 613 >gi|229527442|ref|ZP_04416834.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae 12129(1)] gi|229335074|gb|EEO00559.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae 12129(1)] gi|327485110|gb|AEA79517.1| Type IV pilus biogenesis protein PilQ [Vibrio cholerae LMA3894-4] Length = 571 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I V+ L+++G + + ++ S Sbjct: 308 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGL 366 Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + F V + + L AL+ + ++ P L Sbjct: 367 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 426 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A G + Y SSS+GA++V + L TP + R+ L + Sbjct: 427 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 485 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LG Sbjct: 486 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 545 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR + ++E+ I TP +V Sbjct: 546 ALFRRTYEQMGKSELLIFVTPKVV 569 >gi|188535320|ref|YP_001909117.1| Putative type II secretion system protein [Erwinia tasmaniensis Et1/99] gi|188030362|emb|CAO98253.1| Putative type II secretion system protein [Erwinia tasmaniensis Et1/99] Length = 384 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 131/311 (42%), Gaps = 27/311 (8%) Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + D A + +L+ + R+ +V L ++ L++T Sbjct: 93 VHADAAAVNTSLQ----NERTRLMSARGSVTLDSRTNSLLLRDTEKALTQT--------- 139 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFA 231 ++ + L++ Q+ L I + + L+++G ++G S + + Sbjct: 140 ------ERWIRQLDVPLA-QIELAAQIVTISEESLREMGVTWGMSGEAQVSDALRTSQLR 192 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + + F++ LD L ALE +A P L Q+AS G Sbjct: 193 VELATGRPAGVAGFTLA-KLDGRLLALELSALESEHQADIIASPRLFTSHQQTASIKQGT 251 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MP 349 + Y+ + ++G+T++ + + + TP V GRI L++ + P + +G+ + Sbjct: 252 EIPYEVSTGNSGSTTMEFKEAMLGMEVTPVVQPNGRILLKLHISQNVPGRNMRSGENEVL 311 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + ++ DT V L G T+ L G+ + + + +P L IP+LGALFR+ ++ E Sbjct: 312 TIDKQEIDTQVILKDGQTLALGGIFQQQSESGRTKVPWLGDIPLLGALFRHDVRQQKRRE 371 Query: 410 IFIAATPFLVK 420 + I TP L++ Sbjct: 372 LVIFITPRLIR 382 >gi|13475694|ref|NP_107261.1| general secretion proteinD [Mesorhizobium loti MAFF303099] gi|14026450|dbj|BAB53047.1| general secretion protein D [Mesorhizobium loti MAFF303099] Length = 708 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 117/288 (40%), Gaps = 15/288 (5%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 V E +++++ +++ QV L+ IAEV + + G Sbjct: 401 AHATVVADVENNALLIQTTARDYQRIEQILSKVDVL-PTQVMLEAVIAEVTLNDDLKYGL 459 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + + S + A G ++S + + L+AL + T + ++ P Sbjct: 460 RWFFENGGTKVSVTDVAKAAAAATLPGFNWSYA----TDNIQVTLNALSKITDVNVISAP 515 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRI 328 T+ A++ Q A G Q T S SV D GV+L TP + + GR+ Sbjct: 516 TIMALNNQKAILQVGDQVPILTQQSQDTGNGSAPIINSVQMKDTGVILTVTPRINNAGRV 575 Query: 329 GLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L IQ EVS ++ D P+ + RK T V + G ++ L GL++ + + +P+ Sbjct: 576 MLDIQQEVSNVTKTDSSDIDSPTIQQRKVQTRVLVNDGESLALGGLIQQNNSVDRSQVPI 635 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 L IPILG F+ TE+ I P +V+ + + D + Sbjct: 636 LGDIPILGNAFKQKDDTIRRTELIIFIRPHVVR--DINEAREVTDEFR 681 >gi|262375159|ref|ZP_06068393.1| general secretion pathway protein D [Acinetobacter lwoffii SH145] gi|262310172|gb|EEY91301.1| general secretion pathway protein D [Acinetobacter lwoffii SH145] Length = 754 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 64/268 (23%), Positives = 106/268 (39%), Gaps = 31/268 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + ++ L+I QV ++ I EV Q+G Q ++ SSG +FG + Sbjct: 378 ESAIDQLDIR-RQQVLIEAAIIEVEGTDADQLGVQWALGDISSGIGLVNFDNFGTSLKNI 436 Query: 242 G-----------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 GD+ R + ++ AL+ T L+ P++ Sbjct: 437 AAGYLTGGGAGAASAVGAGSSLVLGDYREGSDGSRRLYGAMIQALKETTKSNLLSTPSIV 496 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + A G + T S STGA T++ D GV L P + G + L Sbjct: 497 TMDNEEAYIVVGENVPFVTGSVSTGAAGVANPYTTIERKDVGVTLKVVPHIGEDGTVRLE 556 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ EVS+ R T++ G TIVL GL+ D+ ++ +P L I Sbjct: 557 VEQEVSDVKASKGQAQDLVTSKRAIKTSILAEHGQTIVLGGLISDNTSYGRQAVPGLGAI 616 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P LG LFR+ + ++ + I P +V Sbjct: 617 PGLGRLFRSEGKSNQKRNLLIFIHPTIV 644 >gi|254524408|ref|ZP_05136463.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14] gi|219721999|gb|EED40524.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14] Length = 792 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 126/314 (40%), Gaps = 32/314 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------- 234 ++V++ L+ QV ++ I EV + ++G Q + + F Sbjct: 379 RRVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTTGGSGLNT 437 Query: 235 ------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G K G ++ GV + + + +AL+ L+ P L + Sbjct: 438 GARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSRGGANILSTPNLMTLDN 497 Query: 283 QSASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 ++AS G + + S+ ++ D G+ L P + G + L I Sbjct: 498 EAASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQ 557 Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 EVS ++ R DT+V L G +VL GLL+D + ++ +P L KIP+ Sbjct: 558 EVSSIDAQSASSTAGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPV 617 Query: 394 LGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 LGALFR+ R +T + + P +V+ P A + L+R D Y +A+A + Sbjct: 618 LGALFRSDTRKRAKTNLMVFLRPHVVRDPAAGQRLTR--DRYDYMRNAQAGAQPAQSWAL 675 Query: 453 GPKEASEVEGQNYK 466 A ++ Q+ Sbjct: 676 PALSAPQLPPQDLS 689 >gi|153825107|ref|ZP_01977774.1| fimbrial assembly protein [Vibrio cholerae MZO-2] gi|149741253|gb|EDM55295.1| fimbrial assembly protein [Vibrio cholerae MZO-2] Length = 578 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 105/263 (39%), Gaps = 28/263 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229 +++ L+I QV ++ I V+ L+++G + + ++ S Sbjct: 316 EIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLL 374 Query: 230 ----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + F V + + L AL+ + ++ P L Sbjct: 375 ADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLI 434 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + Q A G + Y SSS+GA++V + L TP + R+ L + Sbjct: 435 TTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDR 493 Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LGA Sbjct: 494 RGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGA 553 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFR + ++E+ I TP +V Sbjct: 554 LFRRTYEQMGKSELLIFVTPKVV 576 >gi|162419434|ref|YP_001608044.1| putative outer membrane porin HofQ [Yersinia pestis Angola] gi|165936209|ref|ZP_02224778.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. IP275] gi|166213214|ref|ZP_02239249.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. B42003004] gi|167399124|ref|ZP_02304648.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418934|ref|ZP_02310687.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425621|ref|ZP_02317374.1| protein transporter HofQ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470614|ref|ZP_02335318.1| protein transporter HofQ [Yersinia pestis FV-1] gi|229836369|ref|ZP_04456536.1| predicted fimbrial transporter [Yersinia pestis Pestoides A] gi|229840006|ref|ZP_04460165.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842087|ref|ZP_04462242.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis str. India 195] gi|229904612|ref|ZP_04519723.1| predicted fimbrial transporter [Yersinia pestis Nepal516] gi|162352249|gb|ABX86197.1| protein transporter HofQ [Yersinia pestis Angola] gi|165915823|gb|EDR34431.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. IP275] gi|166205512|gb|EDR49992.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. B42003004] gi|166962928|gb|EDR58949.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051628|gb|EDR63036.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055311|gb|EDR65105.1| protein transporter HofQ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678730|gb|EEO74835.1| predicted fimbrial transporter [Yersinia pestis Nepal516] gi|229690397|gb|EEO82451.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis str. India 195] gi|229696372|gb|EEO86419.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706437|gb|EEO92444.1| predicted fimbrial transporter [Yersinia pestis Pestoides A] gi|320013284|gb|ADV96855.1| putative fimbrial transporter [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 500 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + + L+++G + + G+++ F + + F V + Sbjct: 269 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 328 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + LE+ + +A P L Q+AS G Y A ++ Sbjct: 329 GGRLLELELSA-LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 387 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P I + G+ M ++ T V + G TI Sbjct: 388 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 447 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + +Q +PLL+ IP+LGA+FR + E+ I TP L+ Sbjct: 448 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLI 498 >gi|262189810|ref|ZP_06048151.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae CT 5369-93] gi|262034306|gb|EEY52705.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae CT 5369-93] Length = 571 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I V+ L+++G + + ++ S Sbjct: 308 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGL 366 Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + F V + + L AL+ + ++ P L Sbjct: 367 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 426 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A G + Y SSS+GA++V + L TP + R+ L + Sbjct: 427 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 485 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LG Sbjct: 486 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 545 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR + ++E+ I TP +V Sbjct: 546 ALFRRTYEQMGKSELLIFVTPKVV 569 >gi|237809367|ref|YP_002893807.1| type IV pilus secretin PilQ [Tolumonas auensis DSM 9187] gi|237501628|gb|ACQ94221.1| type IV pilus secretin PilQ [Tolumonas auensis DSM 9187] Length = 702 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231 K ++ +L++A QV ++ + V + +G + +T ++ S S + Sbjct: 437 KDMIKVLDVA-VKQVVIEARMVTVTDGVEDALGIRWGVTDINTNGSTSGSIEGLDTAATG 495 Query: 232 -------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 A + F V + D + L ALE ++ P +T Sbjct: 496 ETPAIDDRLNVNLAAAPSSGTAASIAFQVAKLADGSLLDLELSALENENKAEIISSPRVT 555 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS- 337 + + A G + Y S+S+GAT+++ + L TP + + L + Sbjct: 556 TANQKEALIEQGYEIPYNE-SASSGATTISFKKAVLSLKVTPQITPDNNVILDLHVTQDD 614 Query: 338 --EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + V N G + + T V + +G T+VL G+ I++ IP+L IP +G Sbjct: 615 IYQDVNTGNGGTAKALSTQAITTQVLVKNGETLVLGGIYNRSIKKTVNKIPVLGDIPGVG 674 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LFRN+ + E+ I TP +V Sbjct: 675 VLFRNTVNTNTKKELLIFVTPKIV 698 >gi|225077283|ref|ZP_03720482.1| hypothetical protein NEIFLAOT_02342 [Neisseria flavescens NRL30031/H210] gi|224951427|gb|EEG32636.1| hypothetical protein NEIFLAOT_02342 [Neisseria flavescens NRL30031/H210] Length = 710 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 30/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------- 225 +K+++ L++ QV ++ I E + +G + G+ Sbjct: 438 RKLIDELDVPT-RQVMVEARIVEAEDTFFRNLGVKFGFVGAKGSRAWGSNWSNAQTNYST 496 Query: 226 -----------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 P+ S + + ++ + + A E +T++ Sbjct: 497 KFSSDRGDVDYPTWSLEPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISN 556 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + + A SG + Y+ +SS GATS+T + L TP + G+I + ++ Sbjct: 557 PRVLTQDRKEAKIESGTEIPYQEAASS-GATSITFKKAVLGLTVTPNITPDGQIIMTVKI 615 Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 P+ V++ + +T + GGT+++ G+ +++ +P+L IP+ Sbjct: 616 NRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPV 675 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422 +G LF++ E+ I TP ++ V Sbjct: 676 VGNLFKSRGKRENRRELLIFITPHIMDNV 704 >gi|317484811|ref|ZP_07943707.1| general secretion pathway protein D [Bilophila wadsworthia 3_1_6] gi|316923941|gb|EFV45131.1| general secretion pathway protein D [Bilophila wadsworthia 3_1_6] Length = 665 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 117/281 (41%), Gaps = 32/281 (11%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------GPSK 228 + ++ L++ QV ++ I EV + G +I G++ G + Sbjct: 353 ALSNIVAKLDVV-RKQVFIEALIMEVSSEASFSFGINWAIGGNTGDAAIVGGVSLNGGAV 411 Query: 229 SFAADFGGKFVSEGGDFSVKGVL--------DRFSFETVLHALERATAIRTLAEPTLTAI 280 S ++ K VS S+ +L ++ +++L+A+ + + LA P L + Sbjct: 412 SLSSSGANKTVSLPAGVSIGAILKDAITVGNTSYNIQSILNAVRGNSDVDVLATPQLLTL 471 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTE 335 + AS + S++ T D GV L TP + G + L ++ E Sbjct: 472 DNEEASVEVVDNIPFTKESTTRNDNDFTTQSMDYKDVGVKLKITPRISDDGSLRLEVEQE 531 Query: 336 VSEPVIG----VNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 VS G N + P+ R R TT+ L T V+ GLL D + +P L Sbjct: 532 VSRVTQGLITLTNGDQLVAPTTRKRLVKTTILLQDSQTAVIGGLLDDQKTYNQSEVPGLG 591 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSR 429 IP+LG LF++ +T +FI TP +++ A DL+R Sbjct: 592 SIPVLGWLFKSRNKKSTQTNLFIFITPKVIRNAADSADLTR 632 >gi|238783115|ref|ZP_04627141.1| Protein transporter HofQ [Yersinia bercovieri ATCC 43970] gi|238715911|gb|EEQ07897.1| Protein transporter HofQ [Yersinia bercovieri ATCC 43970] Length = 405 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L+++G + + S S F + F+V + Sbjct: 174 QQVQLAAHIVTMSRENLQELGVRWGMGESQHATSLRVNDFNVNLPLANSVVNAGFNVARI 233 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + E+ + +A P L A Q+AS G Y GA S+ Sbjct: 234 GGRLLELELSAL-EQENQVDIIASPRLVASHLQTASIKQGSDIPYAVARGDKGAVSIEFK 292 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + GD + ++ T + + G TI Sbjct: 293 EAVLGMEVTPKILRNGKITLNLKISQNMPGMTIKRGDTEALLIDKQEIKTQITVNDGETI 352 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + Q +P+L+ IP LGALF+ + E+ I TP L+ Sbjct: 353 VLGGIFQQKNNQAVNKVPILADIPWLGALFKQDTKQQSRRELVIFITPRLI 403 >gi|256823455|ref|YP_003147418.1| type IV pilus secretin PilQ [Kangiella koreensis DSM 16069] gi|256796994|gb|ACV27650.1| type IV pilus secretin PilQ [Kangiella koreensis DSM 16069] Length = 701 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 104/249 (41%), Gaps = 12/249 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--SSSGPSKSFAADFGGKFV 239 ++++ L+I QV ++ I + +G + ++ +S + F + Sbjct: 450 RRLVAQLDIP-VRQVLIEARIVTADDGFARDLGSRFGVSDVMNSGEVNGDFNVNLPIANP 508 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + S + D + L ALE +A P + + + A +G + Y + Sbjct: 509 AGSLGLSFARLQDGIVVDMELSALESENRGEVVASPKVITANQKEAFIKAGEEIPYLQGA 568 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--------NAGDMPSY 351 SS GA +V + + L TP + GR+ L + V + P+ Sbjct: 569 SS-GAANVQFKEAVLELKVTPQITPDGRVILDLAITQDTRGENVIFTSPDGGGSSGAPAI 627 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ T V + +G TIVL G+ + + +PLL IP+LG LF+N++ + E+ Sbjct: 628 NTQEIGTQVLVDNGETIVLGGIFQHRTTYDESKVPLLGDIPLLGWLFKNTQREDTKQELL 687 Query: 412 IAATPFLVK 420 I TP +++ Sbjct: 688 IFVTPKIIE 696 >gi|261339183|ref|ZP_05967041.1| hypothetical protein ENTCAN_05409 [Enterobacter cancerogenus ATCC 35316] gi|288319030|gb|EFC57968.1| general secretion pathway protein D [Enterobacter cancerogenus ATCC 35316] Length = 643 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 62/272 (22%), Positives = 110/272 (40%), Gaps = 18/272 (6%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGG 236 +S +KV++ L+I QV ++ IAEV+ +G Q + G G + + Sbjct: 328 NSLEKVIDKLDIRRP-QVLVEAIIAEVQDGNGMDLGVQWTGKHGGVQFGATGLPISQVKN 386 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295 + + F ++ AL + L+ P++ + + ASF G Sbjct: 387 GTMKGTAFTGLATGFFNGDFGALVTALSTGSKNDILSTPSVVTLDNKEASFNVGQDVPVL 446 Query: 296 ---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPS 350 +T S SV G L P + I L+I+ EVS A P+ Sbjct: 447 SGSQTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDASATEDASLGPT 506 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+VL GL+++ ++ +PLL IP++G LFR + + + + Sbjct: 507 FNTRTINNEVMVHSGQTVVLGGLMENVTKETVSKVPLLGDIPLVGQLFRYTSEDTSKRNL 566 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 + +++ DD+YS K Sbjct: 567 MVFIHTTVLRD---------DDNYSAASKEKY 589 >gi|241664484|ref|YP_002982844.1| type IV pilus secretin PilQ [Ralstonia pickettii 12D] gi|240866511|gb|ACS64172.1| type IV pilus secretin PilQ [Ralstonia pickettii 12D] Length = 721 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 100/249 (40%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------------PSKSF 230 QV ++ I E + +G + ++G P+ SF Sbjct: 469 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 528 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 529 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 588 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV+ + L TP + G I L + +V++ +G+ + + Sbjct: 589 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLDV--DVNKDSVGIQTTNGFA 645 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ TE+ Sbjct: 646 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 705 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 706 LVFLTPRVL 714 >gi|309782882|ref|ZP_07677602.1| type IV pilus biogenesis protein PilQ [Ralstonia sp. 5_7_47FAA] gi|308918306|gb|EFP63983.1| type IV pilus biogenesis protein PilQ [Ralstonia sp. 5_7_47FAA] Length = 719 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 100/249 (40%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------------PSKSF 230 QV ++ I E + +G + ++G P+ SF Sbjct: 467 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 526 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 527 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 586 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV+ + L TP + G I L + +V++ +G+ + + Sbjct: 587 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLDV--DVNKDSVGIQTTNGFA 643 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ TE+ Sbjct: 644 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 703 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 704 LVFLTPRVL 712 >gi|167855583|ref|ZP_02478343.1| type II secretory pathway, component HofQ [Haemophilus parasuis 29755] gi|167853274|gb|EDS24528.1| type II secretory pathway, component HofQ [Haemophilus parasuis 29755] Length = 420 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 13/249 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ L+ E Q+ ++ I + + L+Q+G + + + K G + Sbjct: 164 QLIETLDKPTE-QIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNN 222 Query: 243 GDFSVK-----------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + + ++ L ALE I +A P L + AS G Sbjct: 223 LNVNFPVNPSASVALQIAAINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGT 282 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 + Y S T + + + L TP + +I L + + P +N M + Sbjct: 283 EIPYAMYSKKKEITDIEFREAVLGLEVTPHISKQNQILLDLAISQNSPNNQMN-NMMATI 341 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ +T V G TIVL G+ + I + ++ +PLL IP++ LF +R + E+ Sbjct: 342 DKQEINTQVLAKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKRELV 401 Query: 412 IAATPFLVK 420 I TP++VK Sbjct: 402 IFVTPYIVK 410 >gi|222083138|ref|YP_002542503.1| general secretion pathway protein D [Agrobacterium radiobacter K84] gi|221727817|gb|ACM30906.1| general secretion pathway protein D [Agrobacterium radiobacter K84] Length = 714 Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 70/265 (26%), Positives = 114/265 (43%), Gaps = 14/265 (5%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 Q ++++ L++ QV ++ IAEV + + G + G S + Sbjct: 423 TTQREYEHIEQILKQLDVM-PTQVLIEAVIAEVTLNDQLKFGLRWFFENGKFGVGLSDLS 481 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 D G + L+AL T + ++ PTL A++ Q A+ G Q Sbjct: 482 DGSTGASFPG----FAWTFASSNVGATLNALSSITNVNIVSAPTLMALNNQKATLQVGDQ 537 Query: 293 HLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 T S++ +S + D GV+L P V S GR+ L IQ EVS V + Sbjct: 538 VPIVTQQSASTTSSNTAIVSSIDLKDTGVILTVLPRVNSSGRVMLDIQQEVSNVVKTTTS 597 Query: 346 G-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 G D P+ + RK T V + ++ L GL++ +P+L K+PI G F+N Sbjct: 598 GIDSPTIQQRKLSTKVIVDDNESVALGGLIQQSNTLNHSQVPILGKMPIFGNAFKNKEDT 657 Query: 405 REETEIFIAATPFLVKPV-AMRDLS 428 +TE+ I P +V+ V RD++ Sbjct: 658 INKTELIIFIKPRIVRDVRQARDVT 682 >gi|187930316|ref|YP_001900803.1| type IV pilus secretin PilQ [Ralstonia pickettii 12J] gi|187727206|gb|ACD28371.1| type IV pilus secretin PilQ [Ralstonia pickettii 12J] Length = 721 Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 100/249 (40%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------------PSKSF 230 QV ++ I E + +G + ++G P+ SF Sbjct: 469 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 528 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 529 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 588 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV+ + L TP + G I L + +V++ +G+ + + Sbjct: 589 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLDV--DVNKDSVGIQTTNGFA 645 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ TE+ Sbjct: 646 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 705 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 706 LVFLTPRVL 714 >gi|238758713|ref|ZP_04619887.1| Protein transporter HofQ [Yersinia aldovae ATCC 35236] gi|238703010|gb|EEP95553.1| Protein transporter HofQ [Yersinia aldovae ATCC 35236] Length = 437 Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L ++G + T + +F + + F+V + Sbjct: 206 QQVQLAAHIVTMSRENLHELGVRWGMDEATQPRALRVNNFNVNLPLPNSALSAGFNVARI 265 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + E+ + +A P L Q+AS G Y G ++ Sbjct: 266 GGRLLELELSAL-EQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGVPTIEFK 324 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + GD + ++ T + + G TI Sbjct: 325 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAIKRGDSEALLIDKQEIKTQITVNDGETI 384 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + Q +P+L+ IP+LGALF+ + E+ I TP L+ Sbjct: 385 VLGGIFQQKNNQGINKVPILADIPLLGALFKQDVRAQTRRELVIFITPRLI 435 >gi|229524610|ref|ZP_04414015.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae bv. albensis VL426] gi|229338191|gb|EEO03208.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae bv. albensis VL426] Length = 571 Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 105/264 (39%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I V+ L+++G + + ++ S Sbjct: 308 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGL 366 Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + F V + + L AL+ + ++ P L Sbjct: 367 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 426 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A G + Y SSS+GA +V + L TP + R+ L + Sbjct: 427 ITTNKQPAYIEQGTEIPYLE-SSSSGAPTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 485 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LG Sbjct: 486 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 545 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR + ++E+ I TP +V Sbjct: 546 ALFRRTYEQMGKSELLIFVTPKVV 569 >gi|94312199|ref|YP_585409.1| type II and III secretion system protein [Cupriavidus metallidurans CH34] gi|93356051|gb|ABF10140.1| pili assembly protein PilQ [Cupriavidus metallidurans CH34] Length = 710 Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 96/247 (38%), Gaps = 22/247 (8%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------------PSKSFAADF 234 QV ++ I E + +G + SG P+ S A Sbjct: 462 RQVIIEARIVEASDTFSRNLGVKLGFALPKSGSSLSSNYGNSLPNATNDGTPALSLPAAA 521 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 FS+ + L ALE + ++ P + + A G + Sbjct: 522 INSVNPATAAFSIFNAAAGRFLDLELSALEADGKGKIISSPRVVTANNIKALIEQGTELP 581 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 Y++ +SS GATSV + L TP + G + L + +V++ +G+ + + + Sbjct: 582 YQSATSS-GATSVQFRKANLKLEVTPQITPEGNVLLDV--DVNKDSVGIRTDNGFAIDTK 638 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T V + +GGT+V+ G+ + +P L +P+LG F+N+ TE+ + Sbjct: 639 HVQTQVLVENGGTVVIGGIYSQEESNTVNKVPWLGDLPVLGNFFKNNAKVNNRTELLVFL 698 Query: 415 TPFLVKP 421 TP ++ Sbjct: 699 TPRVLND 705 >gi|323939252|gb|EGB35464.1| general secretion pathway protein D [Escherichia coli E482] Length = 504 Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 179 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 237 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 238 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 297 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 298 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 357 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ +PLL Sbjct: 358 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLL 417 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 418 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 477 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 478 KALVGSEDLPVLDENTFN 495 >gi|238758913|ref|ZP_04620085.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236] gi|238702870|gb|EEP95415.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236] Length = 641 Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 56/281 (19%), Positives = 113/281 (40%), Gaps = 14/281 (4%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V++ L++ QV ++ I E + +G Q + G + + +G Sbjct: 329 QVIDKLDVR-RAQVLVEAIIVETQNGEGLNLGIQWA-NKFLGGVNFIKNSGATASSSEKG 386 Query: 243 GDFSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G+ F +++ + AL + LA P++ + A F G + T + Sbjct: 387 IPMMIAGLTAGFYKGNWDGLFSALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLTST 446 Query: 300 SSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYR 352 +T S++ GV+L P + + L I+ EVS + + Sbjct: 447 QTTATDKVYNSISRQPVGVMLKVKPQINQGDSVLLEIRQEVSSVADSTDTNTNNLGSVFN 506 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + V + SG T+V+ GLL ++ +P L IP++G LFR ++ E + + + Sbjct: 507 KRVVNNAVLVRSGETVVVGGLLDKKTNRIINKVPFLGDIPLIGGLFRQTKEKVERSNLIL 566 Query: 413 AATPFLVKPVAMRDLSRPDD--HYSVEDDAKAFFFNRVNKI 451 P +++ V L Y+V ++ + + + I Sbjct: 567 FIKPTILREVDDYSLVTSGKYSEYNVSNNKEYSIADDMKLI 607 >gi|238754545|ref|ZP_04615899.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473] gi|238707176|gb|EEP99539.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473] Length = 674 Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 61/280 (21%), Positives = 110/280 (39%), Gaps = 21/280 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGG 236 +KV+ L+I QV ++ I E + +G Q + G S + G Sbjct: 359 EKVIEKLDIR-RAQVLVEAIIVEAQDGEGINLGIQWDTKQKKVGGFISYNKSNLGNIQNG 417 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295 G + R ++ + AL ++ LA P++ + A F+ G + Sbjct: 418 VTSIANGISGLTTGFYRGNWSGLFTALATNSSNEILATPSIVTLDNMDAEFSVGQEVPVL 477 Query: 296 ---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMP 349 +T S+ +++ G++L P + + L I+ EVS N Sbjct: 478 SSQQTTSTDKVYNTISRQSVGIMLKVKPQINKGDSVLLEIRQEVSSVAENSNVDKDNIGS 537 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R + V + SG T+V+ GLL + + IPLL IPI+G LFR + E+ Sbjct: 538 TFNKRVVNNAVLVKSGETVVVGGLLDKKVSNVINKIPLLGDIPIIGNLFRQKKEKIEKRN 597 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 + + P +++ DD+ S + F + N Sbjct: 598 LILFIKPTIIR--------ESDDYLSTTSEKSKTFNEKNN 629 >gi|88866562|gb|ABD57336.1| TapQ [Aeromonas salmonicida subsp. salmonicida A449] Length = 730 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 109/270 (40%), Gaps = 31/270 (11%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------ 232 S+ K ++++L+I QV ++ + + + +G + +T + + + + Sbjct: 459 SNIKPMLDILDIP-VKQVVIEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGSIEGNDG 517 Query: 233 ---------------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 + + F V + D + L ALE+ + Sbjct: 518 SGNNNGGSAITRPGVEDRMNVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEI 577 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P +T + + A G + Y SSS+GATSVT + L TP + R+ L Sbjct: 578 IASPRVTTANQKPALIEQGTEIPYVE-SSSSGATSVTFKKAVLSLKVTPQITPDNRVILD 636 Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + GD S + T V + +G T+VL G+ + I+ +PLL Sbjct: 637 LTVTQDTKGETVPTGTGDAVSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLG 696 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG LFR + ++ E+ I TP +V Sbjct: 697 DIPGLGVLFRKTTSENKKRELLIFVTPKIV 726 >gi|90413595|ref|ZP_01221585.1| putative fimbrial assembly protein [Photobacterium profundum 3TCK] gi|90325368|gb|EAS41857.1| putative fimbrial assembly protein [Photobacterium profundum 3TCK] Length = 565 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 103/264 (39%), Gaps = 26/264 (9%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---------- 229 S K +++ L+I QV ++ I + + ++G + ++ + + Sbjct: 302 SIKDIISALDIP-VKQVQIEARIVTINEGDVDELGVRWGVSKHNGNFTLGGSIESNLGSV 360 Query: 230 ------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + + + L AL+ + ++ P L Sbjct: 361 GLLKDDVSVDDFLNVNLAAQKAGASSIAFQIAKVGDILLDLELSALQSESKAEIISSPRL 420 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q+A G + Y SSS GA S+ + L TP + ++ L + Sbjct: 421 VTTNKQTAYIEQGTEIPYLEASSS-GAVSIDFKKAVLSLMVTPQITPDNKLVLDLVVTQD 479 Query: 338 EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 EP V G + S ++ T V + +G TIVL G+ + + + +PLL +P LG Sbjct: 480 EPGKTVVTGIGEAVSINTQRIGTQVLVENGETIVLGGIYQHQMNKSVSKVPLLGDLPYLG 539 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR+S + E+ I TP +V Sbjct: 540 ALFRHSLEEMGKRELLIFITPKIV 563 >gi|219872291|ref|YP_002476666.1| competence protein E/type II secretory pathway, component HofQ [Haemophilus parasuis SH0165] gi|219692495|gb|ACL33718.1| competence protein E/type II secretory pathway, component HofQ [Haemophilus parasuis SH0165] Length = 420 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 13/249 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ L+ E Q+ ++ I + + L+Q+G + + + K G + Sbjct: 164 QLIETLDKPTE-QIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNN 222 Query: 243 GDFSVK-----------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + + ++ L ALE I +A P L + AS G Sbjct: 223 LNVNFPVNPSASVALQIAAINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGT 282 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 + Y S T + + + L TP + +I L + + P +N M + Sbjct: 283 EIPYAMYSKKKEITDIEFREAVLGLEVTPHISKQNQILLDLAISQNSPNNQMN-NMMATI 341 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++ +T V G TIVL G+ + I + ++ +PLL IP++ LF +R + E+ Sbjct: 342 DKQEINTQVLAKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKRELV 401 Query: 412 IAATPFLVK 420 I TP++VK Sbjct: 402 IFVTPYIVK 410 >gi|152998114|ref|YP_001342949.1| type II and III secretion system protein [Marinomonas sp. MWYL1] gi|150839038|gb|ABR73014.1| type II and III secretion system protein [Marinomonas sp. MWYL1] Length = 393 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 5/227 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ + IA+V R Q G S G S ++ + Sbjct: 168 KQIEISAQIAQVSRTAQSQFGVNWQA-KLSDGVRSSIGGAVDLGALTPTTSLDFSSIGGS 226 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 L +E +++P + G A SG + Y+TVS S+ Sbjct: 227 GLLALTLDMMESEGLANVVSKPKIVTSEGLPARIESGTEVPYQTVSDD--KVSIEFRQAV 284 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 ++L TP V G I L + +G +PS + + T V + + T+VL G+ Sbjct: 285 LMLEVTPFVKDSGHILLSLTIHQD--SVGDLVNGVPSLKTNRLKTQVVVKNQETLVLGGV 342 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++ + + +P S IP LG LF+ +E+ E+ + TP L++ Sbjct: 343 FREERFESESRVPFFSDIPWLGELFKRQSEQQEKVELLVFITPKLLQ 389 >gi|160896756|ref|YP_001562338.1| general secretion pathway protein D [Delftia acidovorans SPH-1] gi|160362340|gb|ABX33953.1| general secretion pathway protein D [Delftia acidovorans SPH-1] Length = 819 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 135/305 (44%), Gaps = 23/305 (7%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + TV G VR + D EL+ + L S +Y + + L++ Q+ + Sbjct: 490 QGTGSTVANLGTVRVMAD-----ELNNSVLVWSTPAEYER--IEAALKRLDLP-PTQILI 541 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--------DFGGKFVSEGGDFSVKGV 250 + +I EV + Q G Q + +G S + + G F+ Sbjct: 542 EASIVEVTLNDGLQYGLQWAFSGDVGNNGYSGSGLISTDGKRTTADIAAAIGQGFNYTLK 601 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGA 304 + + L+AL T ++ +A P+L + +A+ + G Q Y T S+ A Sbjct: 602 NSAGTIKAALNALSSKTNVKVVASPSLMVLDNHTAAISVGTQQPYRSGEISTTTVGSSNA 661 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 S D GV L TP+V + + + + V++ ++ R+ + V + S Sbjct: 662 VSYQYKDTGVNLQVTPSVNAGNIVTMTVNQMVTDVGAKDEITQQVTFLQRQLSSRVSVRS 721 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVA 423 G +IV+ GL++++ + GIP+L ++P++G LF ++ + TE+ + TP +V+ V Sbjct: 722 GESIVMGGLIQENTSDGRSGIPVLHELPVVGNLFGSTNNSMRRTELLVIITPRVVRTDVD 781 Query: 424 MRDLS 428 +R++S Sbjct: 782 IREVS 786 >gi|163802236|ref|ZP_02196131.1| general secretion pathway protein D precursor [Vibrio sp. AND4] gi|159174041|gb|EDP58851.1| general secretion pathway protein D precursor [Vibrio sp. AND4] Length = 675 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 120/321 (37%), Gaps = 55/321 (17%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSF-- 230 + + V+ L+I QV ++ I E+ +G Q I ++G S Sbjct: 330 ALQDVIAQLDIR-RAQVLIEALIVEMSEGDGINLGVQWGNLDTGAVIQYGNTGASIGNVM 388 Query: 231 -----------------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + D+ + GG L + ++ Sbjct: 389 VGLEEAKDQTRTEYYTNSDGERTPYDVTESGDYSTLAAALGGVNGAAMSLVMGDWTALIS 448 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVL 316 A+ + L+ P++T + ASF G + T S+S +V + G+ L Sbjct: 449 AVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTSGANNDNPFQTVDRKEVGIKL 508 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + + L I+ EVS + A D+ + R+ +T+V + G +VL GL+ + Sbjct: 509 KVVPQINEGDSVHLDIEQEVSNVLGAEGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDE 567 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + + +PLL IP++G LF+++ ++ + + P +++ D Sbjct: 568 RAMESESKVPLLGDIPVIGQLFKSTSTQTQKRNLMVFIKPTIIRDGMTADGIT------- 620 Query: 437 EDDAKAFFFNRVNKIYGPKEA 457 + + F R ++Y +E Sbjct: 621 ---QRKYNFIRAEQLYKAQEG 638 >gi|116048592|ref|YP_792609.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115583813|gb|ABJ09828.1| probable type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 803 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 29/328 (8%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++LL+ QV ++ I EV D + G Q Sbjct: 449 QADATTNTLLISAPEPLYRN--LREVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQ 505 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G G + G+ + + Sbjct: 506 AGNLGGNGVFGGVNFGQSALNTAGKNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLAR 565 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313 AL+ L+ P L + +SAS G + + +S+ ++ D G Sbjct: 566 ALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVG 625 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L + EVS + R DT++ L G +VL GL Sbjct: 626 LKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGL 685 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L+D++Q +G+P LS +P +G+LFR + +R +T + + P++V+ A S + Sbjct: 686 LQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMVFLRPYIVRDAAAG-RSITLNR 744 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVE 461 Y A+ R + G +A + Sbjct: 745 YDFIRRAQQRVQPRHDWSVGDMQAPVLP 772 >gi|145300643|ref|YP_001143484.1| general secretion pathway protein D [Aeromonas salmonicida subsp. salmonicida A449] gi|1170051|sp|P45778|GSPD_AERSA RecName: Full=General secretion pathway protein D; Flags: Precursor gi|516351|emb|CAA56668.1| ExeD [Aeromonas salmonicida] gi|142853415|gb|ABO91736.1| general secretion pathway protein D [Aeromonas salmonicida subsp. salmonicida A449] Length = 678 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 62/319 (19%), Positives = 117/319 (36%), Gaps = 42/319 (13%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----------- 194 VL G+ +I+ ++ + + S S+ + N L I + Sbjct: 285 VLKGVSTSIEADKKGGGTTAGGGNASIGGGKLAISADETTNALVITAQPDVMAELEQVVA 344 Query: 195 -------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------E 241 QV ++ I E+ +G Q + T G ++ Sbjct: 345 KLDIRRAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTDTNLPIGSVAIAAKDYNEN 404 Query: 242 GGDFSVKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + + F+ + ++ AL +T L+ P++ + + ASF G Sbjct: 405 GTTTGLADLAKGFNGMAAGFYHGNWAALVTALSTSTKSDILSTPSIVTMDNKEASFNVGQ 464 Query: 292 QHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + ++ S S+ ++ G L TP + + L I+ EVS G Sbjct: 465 EVPVQSGSQSSTTSDQVFNTIERKTVGTKLTVTPQINEGDSVLLNIEQEVSSVAQKQATG 524 Query: 347 D---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P++ R V + SG T+VL GL+ + Q+ +PLL IP+LG LFR++ Sbjct: 525 TADLGPTFDTRTIKNAVLVKSGETVVLGGLMDEQTQEKVSKVPLLGDIPVLGYLFRSTNN 584 Query: 404 NREETEIFIAATPFLVKPV 422 + + + P +++ Sbjct: 585 TTSKRNLMVFIRPTILRDA 603 >gi|104781447|ref|YP_607945.1| type II secretion system protein XcpQ-2; signal peptide [Pseudomonas entomophila L48] gi|95110434|emb|CAK15142.1| putative type II secretion system protein XcpQ-2; putative signal peptide [Pseudomonas entomophila L48] Length = 787 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 28/281 (9%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S ++V++ L+ QV ++ I EV D + G Q G+ A+ GG + Sbjct: 457 SLREVIDQLDQR-RAQVVVESLIVEVGEDDANEFGIQWQA-GNLGKNGLFGGANLGGSGL 514 Query: 240 SEG-----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 +G G + GV + + AL+ L+ P L + Sbjct: 515 GKGPTSIDVLPPGLSVGVVDGTVKIPGVGAVLDLKVLARALKSKGGSNVLSTPNLLTLDN 574 Query: 283 QSASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 ++AS G + + +S+ ++ + G+ L+ P + G + L + Sbjct: 575 EAASIFVGQTIPFVSGQYVTDGGGNSNNPFQTIQREEVGLRLNVRPQISEGGTVKLDVYQ 634 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EVS ++ R DT++ L G +VL GLL+D Q EGIP LS +P + Sbjct: 635 EVSSVDQRASSAAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYTQSNEGIPWLSSLPGV 694 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHY 434 GALFR+ R +T + + P++V+ A R ++R + Sbjct: 695 GALFRSERRASNKTNLMVFLRPYIVRDANAGRSITRNRYDF 735 >gi|292493619|ref|YP_003529058.1| general secretion pathway protein D [Nitrosococcus halophilus Nc4] gi|291582214|gb|ADE16671.1| general secretion pathway protein D [Nitrosococcus halophilus Nc4] Length = 767 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 71/312 (22%), Positives = 127/312 (40%), Gaps = 22/312 (7%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDI 209 ++ V + + + + K+++ L QV ++ TIAEV+ Sbjct: 429 ADDDADEKEVRIIADVENNALLISATSRDYDKILSALRQLDIPPRQVLVEATIAEVQLTD 488 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK----------GVLDRFSFETV 259 Q G Q + + A +F G V+ + D + Sbjct: 489 NLQYGLQWFFRNEVGEFTGTGAVNFSTDVGDNGFLQGVEGLLGGGGFTYALTDDSIVRAL 548 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDY 312 L L + + L+ P L A+ Q+A+ G Q T + +T + V D Sbjct: 549 LRTLASDSKLNVLSSPQLLALDNQTAAIRVGDQVPILTGQTAGLAGTGNTLTSQVQFRDT 608 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELPSGGTIV 369 GV+L TP V + GR+ L I+ EV++ V G ++ R ++ V + SG TIV Sbjct: 609 GVLLTVTPRVNAGGRVTLEIRQEVTDVGDPVTVGSDIQNFTFLQRTFESVVTVQSGETIV 668 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GL++D G+P L K+P +G LF ++ +++ TE+ + TP +V+ L Sbjct: 669 LGGLIRDRDSFTDSGVPFLYKLPFIGPLFGSTTRDKQRTELIVLMTPRVVRDQHEARLVT 728 Query: 430 PDDHYSVEDDAK 441 + + + + Sbjct: 729 EEFRQKLRNASD 740 >gi|330828668|ref|YP_004391620.1| type IV pilus secretin PilQ [Aeromonas veronii B565] gi|328803804|gb|AEB49003.1| Type IV pilus secretin PilQ [Aeromonas veronii B565] Length = 741 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 111/270 (41%), Gaps = 31/270 (11%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------ 232 SS K+++++L+I QV ++ + + + +G + +T + + + + Sbjct: 470 SSIKRMLDILDIP-VKQVVIEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGSIAGNDG 528 Query: 233 ---------------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 + + F V + D + L ALE+ + Sbjct: 529 SGNNNGGSTITRPTADDRLNVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEI 588 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P +T + + A G + Y SSS+GATSVT + L TP + R+ L Sbjct: 589 IASPRVTTANQKPALIEQGTEIPYVE-SSSSGATSVTFKKAVLSLKVTPQITPDNRVILD 647 Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + GD S + T V + +G T+VL G+ + I+ +PLL Sbjct: 648 LTVTQDTKGETVPTGTGDAVSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVTKVPLLG 707 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP LGALFR + ++ E+ I TP +V Sbjct: 708 DIPGLGALFRKTTSENKKRELLIFVTPKIV 737 >gi|311695246|gb|ADP98119.1| type II and III secretion system protein [marine bacterium HP15] Length = 663 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 108/267 (40%), Gaps = 27/267 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--- 235 +++++ L++ QV ++ I E+ ++ + +G Q ++ S + +FG Sbjct: 347 QEAEQIVAALDVR-RAQVMIEAAIVEISDELGQDLGVQVAVGDESGESTPVAGTNFGNVG 405 Query: 236 ------------GKFVSEGGDFSVKGVL----DRFSFETVLHALERATAIRTLAEPTLTA 279 G ++ G + S+ +L AL + A L+ P++ Sbjct: 406 RSLGEVLSAILTGSAITPATGGITIGAGQRNENGVSWGVLLQALSTSAAANLLSTPSIIT 465 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + Q + G ++T S+ T++ D G+ L TPT+ + G + L + Sbjct: 466 LDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERRDIGLTLKVTPTISADGLVRLVV 525 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + + R+ TTV G TIVL GL +DD Q K +PLL IP Sbjct: 526 EQTTESVADSIENASDIVTNKREIKTTVLADDGETIVLGGLTRDDYQVNKSKVPLLGDIP 585 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 +G LF + R + + + P ++ Sbjct: 586 FVGRLFSSESERRVKRNLLVFLRPKIM 612 >gi|262045226|ref|ZP_06018252.1| protein transporter HofQ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037436|gb|EEW38681.1| protein transporter HofQ [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 331 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + L+++G + + + SG + ++D S F++ G Sbjct: 99 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNI-GK 157 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 ++ E L ALER + +A P L A Q AS G + Y+ S +GATSV Sbjct: 158 INGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 217 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + + + TPTVL GR+ L+++ + P V+ G+ + ++ +T VE+ SG T+ Sbjct: 218 EAVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETL 277 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ +PLL IP+LG LFR + E E+ + TP ++ Sbjct: 278 ALGGIFSQKNKTARDSVPLLDDIPVLGRLFRRDGKDNERRELVVFITPRIL 328 >gi|220933412|ref|YP_002512311.1| general secretion pathway protein D [Thioalkalivibrio sp. HL-EbGR7] gi|219994722|gb|ACL71324.1| general secretion pathway protein D [Thioalkalivibrio sp. HL-EbGR7] Length = 655 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 116/319 (36%), Gaps = 49/319 (15%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 NI+ ++ +VL G ++D + V+N L++ Sbjct: 295 GGINIQAHESTNALVLSGPPDAVRDL------------------------RAVINQLDVR 330 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------- 244 QV ++ IAEV D + ++G Q + +SG G + G Sbjct: 331 -RAQVLVEAVIAEVSYDKITELGVQWGVGNPNSGVGVINFNRSGSGIIGVAGGIDAFLRG 389 Query: 245 -------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + ++ AL ++ L+ P+L + + A G Sbjct: 390 AVATPPNLGDGAFLGGIGTSGSTTIAALVRALAGDSSSNILSTPSLMTMDNEEAEIVVGQ 449 Query: 292 QHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 + S ++ D GV L P + I L I+ EVS+ G A Sbjct: 450 NVPFIAGRSIEQSGQAFDTIQRQDVGVKLRIKPQINEGNSIRLEIEQEVSQVAAGATAAA 509 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 R T V + G +VL GL+ D + Q ++ +P L IP +G LFR +E+ Sbjct: 510 DLVTNKRSLRTIVMVDDGEMVVLGGLIDDVLVQTQDRVPGLGSIPGVGRLFRYDTARKEK 569 Query: 408 TEIFIAATPFLVKPVAMRD 426 + + P +V+ A+++ Sbjct: 570 RNLMVFLHPVIVRDSAVQE 588 >gi|161830646|ref|YP_001597710.1| type II and III secretion system family protein [Coxiella burnetii RSA 331] gi|161762513|gb|ABX78155.1| bacterial type II and III secretion system family protein [Coxiella burnetii RSA 331] Length = 349 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 122/279 (43%), Gaps = 7/279 (2%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G++ + V ++ ++ + + Y S +++ L+I QV +K I + Sbjct: 59 SGILSKFGYAAADVRTNQLWIREEQTHIYLIQS---LVSQLDIPI-HQVLIKARIISISD 114 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERA 266 L +G +++ + D + G D + + + L ALE+ Sbjct: 115 HNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQFGVADIPIIKFKNGQLLDLTLSALEQE 174 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + L+ P L + Q+A SG Y+ + G TSVT + L TP VL Sbjct: 175 GRAQVLSCPELMTNNRQTAIIESGEAIPYQEKTGQ-GNTSVTFKKATLRLKVTPVVLPGN 233 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 RI L++ + + +P+ + ++ T V + + T+VL G+ + QQ + GIP Sbjct: 234 RILLQLNVNQDK-MSSFLVNGVPTIQTQQLTTKVMVNNQETVVLGGIYEQSTQQEEAGIP 292 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 L KIPILG LFR+ + + E ++ I TP ++ P R Sbjct: 293 GLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISPYEKR 331 >gi|242238911|ref|YP_002987092.1| general secretion pathway protein D [Dickeya dadantii Ech703] gi|242130968|gb|ACS85270.1| general secretion pathway protein D [Dickeya dadantii Ech703] Length = 714 Score = 187 bits (475), Expect = 4e-45, Method: Composition-based stats. Identities = 74/357 (20%), Positives = 141/357 (39%), Gaps = 34/357 (9%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 T+++ G ++ + L T R+ ++V+N L+I QV ++ IA Sbjct: 361 TIIIQGKEVIMRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLVEAIIA 413 Query: 204 EVRRDILKQIGFQHS------ITGSSSGPSKSFA----------ADFGGKFVSEGGDFS- 246 EV+ +G Q + +++G S A F S G F+ Sbjct: 414 EVQDADGLNLGIQWANKRAGMTQYTNTGMPISTAIVGVDQYRDDGTLTSNFSSALGSFNG 473 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + ++ +L AL + LA P++ I A+F G + T S +T A Sbjct: 474 IAAGFYHGNWSMLLTALSSNSKNDVLATPSIVTIDNMEATFNVGQEVPVLTGSQTTSADN 533 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTT 359 ++V G+ L P + + L+I+ EVS ++ ++ R + Sbjct: 534 IYSTVERKTVGIKLKVKPQINEGDSVLLQIEQEVSSVADSSSSTSSDLGATFNTRTVNNA 593 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + +G T+V+ GLL + +PLL IP+LG LFR+ + + + P ++ Sbjct: 594 VMVTNGETVVVGGLLNKSTVETDSKVPLLGDIPVLGNLFRSKSLTVSKRNLMLFLRPTII 653 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRV---NKIYGPKEASEVEGQNYKGAIGFIY 473 + + + + + + + N+V N + P + + + AIG Y Sbjct: 654 RDRQQYQATSINQYKAFDSEQDLQRSNKVLDSNTLRLPSGGNTYTFRQVQSAIGSFY 710 >gi|254244921|ref|ZP_04938243.1| hypothetical protein PA2G_05797 [Pseudomonas aeruginosa 2192] gi|126198299|gb|EAZ62362.1| hypothetical protein PA2G_05797 [Pseudomonas aeruginosa 2192] Length = 803 Score = 187 bits (475), Expect = 4e-45, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 29/328 (8%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++LL+ QV ++ I EV D + G Q Sbjct: 449 QADATTNTLLISAPEPLYRN--LREVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQ 505 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G G + G+ + + Sbjct: 506 AGNLGGNGVFGGVNFGQSALNTAGKNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLAR 565 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313 AL+ L+ P L + +SAS G + + +S+ ++ D G Sbjct: 566 ALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVG 625 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L + EVS + R DT++ L G +VL GL Sbjct: 626 LKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGL 685 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L+D++Q +G+P LS +P +G+LFR + +R +T + + P++V+ A S + Sbjct: 686 LQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMVFLRPYIVRDAAAG-RSITLNR 744 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVE 461 Y A+ R + G +A + Sbjct: 745 YDFIRRAQQRVQPRHDWSVGDMQAPVLP 772 >gi|293604906|ref|ZP_06687303.1| general secretion pathway protein D [Achromobacter piechaudii ATCC 43553] gi|292816734|gb|EFF75818.1| general secretion pathway protein D [Achromobacter piechaudii ATCC 43553] Length = 791 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 120/311 (38%), Gaps = 31/311 (9%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGG 236 S ++V++ L+ QV ++ I EV + G Q + +S+G S + GG Sbjct: 412 SLREVIDQLDQR-RAQVLVESLIVEVSEQAAAEFGIQWMTGAGNINSNGTSFIGGTNLGG 470 Query: 237 KFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTA 279 ++ G S+ + + + A++ L+ P L Sbjct: 471 SGITGNGPTSIDALGSGLSLGVVKGTVDVLGNQVINLGVLARAMQNTGEANILSTPNLLT 530 Query: 280 ISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + QSAS G + T SS ++ D G+ L+ P + G + L Sbjct: 531 LDNQSASILVGKTVPFVTGQYVTSGSNGSSNPFQTIEREDVGLKLNIRPQISEGGAVKLD 590 Query: 332 IQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 I EVS + R DT+V + G IVL GLL+D++ +P L Sbjct: 591 IYQEVSSIDESRSTPTTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLTSNSVPGLGS 650 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 +P++G+LFR R +T + + P++V+ A R S D Y A+ R + Sbjct: 651 LPVIGSLFRYDTRKRTKTNLMVFLRPYVVRD-ANRSASVTMDRYDYMRRAQGAAQPRSHW 709 Query: 451 IYGPKEASEVE 461 +A + Sbjct: 710 ALPDMQAPVLP 720 >gi|260774710|ref|ZP_05883614.1| type IV pilus biogenesis protein PilQ [Vibrio coralliilyticus ATCC BAA-450] gi|260609366|gb|EEX35517.1| type IV pilus biogenesis protein PilQ [Vibrio coralliilyticus ATCC BAA-450] Length = 454 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 28/269 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------- 224 + K ++ L++ QV ++ I + L+++G + + ++ Sbjct: 188 QAMKAIITALDVP-VKQVQIEARIVSLNEGDLQELGVRWGFSSTNGSHSVGGSIENNLAN 246 Query: 225 ----GPSKSFAADF------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G S S DF + F V + + L AL+R + ++ Sbjct: 247 LNLYGDSDSSLDDFLNVNLAATSVNASTIAFQVAKLGSDTLLDLELSALQRESRAEVISS 306 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L + Q A G + Y +SS GATSV + L TP + S R+ L + Sbjct: 307 PRLITTNKQPAYIEQGTEIPYLEAASS-GATSVNFKKAVLSLKVTPQITSDNRLILDLNV 365 Query: 335 EVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 P V+ G+ + ++ T V + +G TIVL G+ + + + +PLL IP Sbjct: 366 TQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETIVLGGIYQHSVSDTVDQVPLLGDIP 425 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKP 421 +LG LFR + ++E+ I TP +V P Sbjct: 426 LLGGLFRRTYQQMGKSELLIFVTPTVVAP 454 >gi|302342781|ref|YP_003807310.1| general secretion pathway protein D [Desulfarculus baarsii DSM 2075] gi|301639394|gb|ADK84716.1| general secretion pathway protein D [Desulfarculus baarsii DSM 2075] Length = 746 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 70/286 (24%), Positives = 118/286 (41%), Gaps = 23/286 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++V IAEV D ++G + + + G + Sbjct: 472 PKQVLIEVVIAEVTLDDQLKLGVEWRYLTENGATFSDINLKPDADLLPTSGLVYTIAKTN 531 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------VSSSTGA- 304 F L AL + ++ ++ P L A QSA G + T +S+STG Sbjct: 532 ELLF--TLKALAQKDKLQVISSPLLLAAENQSARILVGREIPIITDLTTSEDISTSTGNK 589 Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTV 360 S+ D G++L TP + G + L I+ EVS+ P++ R A T V Sbjct: 590 VVDRSIEYRDVGIILTVTPRINDSGVVRLNIRQEVSDVLTDSFGDTGSPAFSQRTATTNV 649 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G +IVLAGL+++ ++ G+P LS +PILG LF+ + TE+ + TP ++ Sbjct: 650 VTTDGQSIVLAGLIQETKHKIDSGVPFLSDVPILGYLFKTEKDVDSRTELILTITPHVIH 709 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 + D + V+ + F+R ++ P + + G Sbjct: 710 DMN-------DARHIVQSLREQERFSR--QMAAPPPSRQQPGDGLD 746 >gi|218670938|ref|ZP_03520609.1| putative pilus assembly protein [Rhizobium etli GR56] Length = 186 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 93/178 (52%), Positives = 123/178 (69%), Gaps = 4/178 (2%) Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 + + S G +V +YG+ L F P VLS GRI L I+T VSEPV G +Y+ R A Sbjct: 13 STTDSDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNA---TYQRRSA 69 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+ETE+ I ATP Sbjct: 70 ETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATP 129 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 +LV+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G+IGFIYK Sbjct: 130 YLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGFIYK 186 >gi|227114133|ref|ZP_03827789.1| general secretion pathway protein D [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 684 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 70/349 (20%), Positives = 128/349 (36%), Gaps = 45/349 (12%) Query: 146 VLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYAN----------SSSKKVMNLLNIAGED 194 VL G+ +IQ D Q A+ +S Q + ++V+ L+I Sbjct: 310 VLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP- 368 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKF 238 QV ++ IAEV+ +G Q + + + G Sbjct: 369 QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAA 428 Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 + G F+ + + ++ +L AL + + LA P++ + A+F G + Sbjct: 429 TTALGGFNGIAAGFYQGNWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLA 488 Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPS 350 +T S +V G+ L P + + L I+ EVS + + Sbjct: 489 GSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGAT 548 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + Sbjct: 549 FNTRTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNL 608 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + P +++ + Y +K FN + SE Sbjct: 609 MLFIRPSIIRDRSQ---------YQSASASKYHSFNAEEEKQRDVNGSE 648 >gi|114321548|ref|YP_743231.1| general secretion pathway protein D [Alkalilimnicola ehrlichii MLHE-1] gi|114227942|gb|ABI57741.1| general secretion pathway protein D [Alkalilimnicola ehrlichii MLHE-1] Length = 673 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 64/291 (21%), Positives = 117/291 (40%), Gaps = 28/291 (9%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------- 225 S + V+N L+I QV ++ IAEV +D ++++G Q + G Sbjct: 328 SLRSVLNRLDIR-RAQVLVEAVIAEVSQDRVEELGVQWGVLSEDRGVGLINFGGAAGAGG 386 Query: 226 ---------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 + S + V +G V + ++ AL +A L+ P+ Sbjct: 387 GIADVIRAAGAISDGSTADLPQVGDGAAIGVGDLRGSTQVAALIRALSGDSASNILSTPS 446 Query: 277 LTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 L + + A G + T S +S+ D GV L P + + L I Sbjct: 447 LMTMDNEEAEIVVGQNVPFITGRAIEDSGQAFSSIQRQDVGVQLRIRPQINEGDTLKLEI 506 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + EVS G+ +R T+V + +G +VL GL+ D ++ + +PLL +P Sbjct: 507 EQEVSSVSGGIQGAADLVTDLRSVRTSVMVENGQMVVLGGLIDDQLRTRSQAVPLLGNLP 566 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 LG LFR R E+ + + P +++ A ++ + + + + + F Sbjct: 567 GLGRLFRYDRSQVEKRNLMVFLRPVIIRDTAAQERATAEPYNRMRAMQQRF 617 >gi|308048042|ref|YP_003911608.1| type IV pilus secretin PilQ [Ferrimonas balearica DSM 9799] gi|307630232|gb|ADN74534.1| type IV pilus secretin PilQ [Ferrimonas balearica DSM 9799] Length = 681 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 24/259 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----------------- 225 +++++L++ QV ++ + VR +I +++G + I+ Sbjct: 421 RLVDILDVP-VKQVVIESRMVTVRDNINEELGIRWGISDQQGDKGTAGTLPGAEDIANGI 479 Query: 226 -PSKSFAADFGGKFVSEGGD--FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 PS S + V G F V + D + L ALER +A P LT + Sbjct: 480 VPSLSDRLNVNLPVVEPAGSIAFHVAKLGDGTLLDLELSALERENKGEIIASPRLTTANQ 539 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 +A G + + S+S+GATSV + L TP + RI L + Sbjct: 540 YTAFIEQGTEIPF-VQSTSSGATSVEFKKAVLGLTVTPQITPDNRIVLDLTVTQDTRGET 598 Query: 343 VNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 V P+ ++ T V +G TIVL G+ + +PLL IP +G LFRN Sbjct: 599 VQTATGPAVAIDTQRISTQVLAQNGETIVLGGIFQQQQLNTVTKVPLLGDIPFVGVLFRN 658 Query: 401 SRFNREETEIFIAATPFLV 419 S+ E+ E+ I TP +V Sbjct: 659 SQDFTEKKELLIFVTPKIV 677 >gi|126454161|ref|YP_001064292.1| general secretion pathway protein D [Burkholderia pseudomallei 1106a] gi|134281369|ref|ZP_01768077.1| general secretion pathway protein D [Burkholderia pseudomallei 305] gi|217423996|ref|ZP_03455496.1| general secretion pathway protein D [Burkholderia pseudomallei 576] gi|226193043|ref|ZP_03788653.1| general secretion pathway protein D [Burkholderia pseudomallei Pakistan 9] gi|237814399|ref|YP_002898850.1| general secretion pathway protein D [Burkholderia pseudomallei MSHR346] gi|254258553|ref|ZP_04949607.1| general secretion pathway protein D [Burkholderia pseudomallei 1710a] gi|126227803|gb|ABN91343.1| general secretion pathway protein D [Burkholderia pseudomallei 1106a] gi|134247036|gb|EBA47122.1| general secretion pathway protein D [Burkholderia pseudomallei 305] gi|163639391|gb|ABY28246.1| general secretion pathway protein D [Burkholderia pseudomallei] gi|217393059|gb|EEC33081.1| general secretion pathway protein D [Burkholderia pseudomallei 576] gi|225934643|gb|EEH30620.1| general secretion pathway protein D [Burkholderia pseudomallei Pakistan 9] gi|237506672|gb|ACQ98990.1| general secretion pathway protein D [Burkholderia pseudomallei MSHR346] gi|254217242|gb|EET06626.1| general secretion pathway protein D [Burkholderia pseudomallei 1710a] Length = 757 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 52/312 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230 + V++ L+ A QV ++ + E++ +G Q + + +G S Sbjct: 394 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 452 Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277 G + GG G + +L ++ L+ P L Sbjct: 453 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 512 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329 + + A G T S S + T D G+ LH P + G + Sbjct: 513 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 572 Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L++ TE S V G N P++ R +TV +G IVL GL++D+ Q + Sbjct: 573 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 632 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 PLL IP +G LFR+ R++T + + P ++ + A+A Sbjct: 633 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 677 Query: 446 NRVNKIYGPKEA 457 NR + I G A Sbjct: 678 NRYDYIQGVTGA 689 >gi|254228550|ref|ZP_04921975.1| general secretion pathway protein D [Vibrio sp. Ex25] gi|262392666|ref|YP_003284520.1| general secretion pathway protein D/type II secretion outermembrane pore forming protein (PulD) [Vibrio sp. Ex25] gi|151938932|gb|EDN57765.1| general secretion pathway protein D [Vibrio sp. Ex25] gi|262336260|gb|ACY50055.1| general secretion pathway protein D/type II secretion outermembrane pore forming protein (PulD) [Vibrio sp. Ex25] Length = 672 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 61/337 (18%), Positives = 121/337 (35%), Gaps = 57/337 (16%) Query: 146 VLHGMVRTIQDSQRAVELSET-------FLSQSGRNQYANSSSKKVMNLLNIAGED---- 194 VL G+ +Q ++ + + + + N ++ +MN L Sbjct: 281 VLKGVSDNLQAEKQVGQKASGAQRGEVVIAAHAATNALVLTAPPDIMNALQDVIAQLDIR 340 Query: 195 --QVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSF-------------- 230 QV ++ I E+ +G Q G+S P Sbjct: 341 RAQVLIEALIVEMSEGDGINLGVQWGSLETGAVIQYGNSGAPIGQVMVGLEEAKDQTRTE 400 Query: 231 ----------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + D+ + G + + ++ A+ + L+ Sbjct: 401 YYTNANGERTPYDVTESGDYSTLASALSGVNGAAMSIVMGDWTALVSAVATDSNSNILSS 460 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIG 329 P++T + ASF G + T S++ +V + G+ L P + + Sbjct: 461 PSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQ 520 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 L I+ EVS V+G N + R+ +T+V + G +VL GL+ + + + +PLL Sbjct: 521 LNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLG 579 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IP+LG LF+++ E+ + + P +++ D Sbjct: 580 DIPVLGHLFKSTSTQTEKRNLMVFIKPTIIRDGMTAD 616 >gi|92112745|ref|YP_572673.1| type II and III secretion system protein [Chromohalobacter salexigens DSM 3043] gi|91795835|gb|ABE57974.1| type II and III secretion system protein [Chromohalobacter salexigens DSM 3043] Length = 668 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 74/359 (20%), Positives = 143/359 (39%), Gaps = 43/359 (11%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------------IRVEMVSDT-- 144 +IL H N D+++ + L R+ + + ++V T Sbjct: 308 LILQSHGLASRRNGDVIVVAPVDELAQMERQTLENRAQSEQLAPLVTDYVQVRYAKATDL 367 Query: 145 -VVLHGM----VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 +L G + + + E + T L + R Q A S + ++ L++ QV ++ Sbjct: 368 AAMLRGSEGFGLLSERGRVTVDERTNTLLVRDTREQLA--SIRGMLERLDVP-VRQVQIE 424 Query: 200 VTIAEVRRDILKQIGFQHSITGSSS--------------GPSKSFAADFG-----GKFVS 240 I R +++G I+ PS + G G Sbjct: 425 ARIVIARDTASRELGVNWGISQRQGVTFDDDGVGSVVDRNPSGANRGSAGLSVDLGDSDG 484 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G FS + + L ALE +T+++P + + ++A G + Y+ S+ Sbjct: 485 SGSTFSFGYLSGDVLLDLELRALESEGKSQTISQPKVITANQKTAVIKQGQEIPYQE-ST 543 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 S+GAT+V + + L TP + G I + + ++ V + P+ +T V Sbjct: 544 SSGATNVEFKEAVLSLEATPQITPDGSIVMDLLIN-NDTVADNSYDGAPAIDTNSIETQV 602 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G T+VL G+L + + P L +P++G+LFR ++ + E+ E+ I TP ++ Sbjct: 603 LVDDGATVVLGGILTSEQLRNLYKTPFLGDLPLIGSLFRYTQESNEKVELLIFITPTII 661 >gi|89075207|ref|ZP_01161638.1| putative fimbrial assembly protein [Photobacterium sp. SKA34] gi|89049029|gb|EAR54596.1| putative fimbrial assembly protein [Photobacterium sp. SKA34] Length = 568 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 60/265 (22%), Positives = 103/265 (38%), Gaps = 29/265 (10%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S K +++ L+I QV ++ I + + ++G + + S + G Sbjct: 306 SIKDIVSSLDIP-VKQVQIEARIVTINEGDIDELGVRWGV--SKVNGDTTVGGSIEGNLA 362 Query: 240 SEGGDFSVKGV-----------------------LDRFSFETVLHALERATAIRTLAEPT 276 S G V L + L AL+ ++ P Sbjct: 363 SSGLLGENASVDDFLNVNLGAGAGAASIAFQVAKLGNILLDLELSALQTENKAEIISSPR 422 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L + ++A G + Y SSS GATSV+ + L TP + ++ L ++ Sbjct: 423 LMTTNKKTAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVTPQITPDDKLVLDLEVTQ 481 Query: 337 SEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + G S ++ T V + +G T+VL G+ + + + +PLL IPIL Sbjct: 482 DNKGEDVPTGTGTAISIDTQRIGTQVLVNNGETVVLGGIYQHSMTHVTRKVPLLGDIPIL 541 Query: 395 GALFRNSRFNREETEIFIAATPFLV 419 GALFR+ + E+ I TP +V Sbjct: 542 GALFRHKMEQMGKRELLIFVTPKIV 566 >gi|157377398|ref|YP_001475998.1| type IV pilus secretin PilQ [Shewanella sediminis HAW-EB3] gi|157319772|gb|ABV38870.1| type IV pilus secretin PilQ [Shewanella sediminis HAW-EB3] Length = 682 Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 103/259 (39%), Gaps = 24/259 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229 +++ +L+I QV ++ + V+ D+ +++G + +T S Sbjct: 422 RLIEVLDIPI-RQVLIESRMVTVKDDVSEELGIRWGVTDQQGDKGTSGSLEGAESISNGI 480 Query: 230 -------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + + F V + D + L ALE+ +A P + + Sbjct: 481 VPALVDRLNVNLPASTGAARVAFHVAKLADGTVLDMELSALEKEDKGEIIASPRIMTSNQ 540 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340 ++A G + Y SSS GA +++ + L TP + R+ L ++ V Sbjct: 541 KAAYIEQGVEIPYLEASSS-GAATISFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKV 599 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G S ++ T V + G TIVL G+ + + +P+L IP +G LFR+ Sbjct: 600 VATPLGSAVSIDTQRIGTQVLVDHGETIVLGGIYQQQLINRVSKVPVLGDIPFVGFLFRS 659 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 660 TTDENNRQELLIFVTPKII 678 >gi|53717646|ref|YP_106632.1| general secretory pathway protein D [Burkholderia pseudomallei K96243] gi|52208060|emb|CAH33990.1| general secretory pathway protein D [Burkholderia pseudomallei K96243] Length = 757 Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 52/312 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230 + V++ L+ A QV ++ + E++ +G Q + + +G S Sbjct: 394 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 452 Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277 G + GG G + +L ++ L+ P L Sbjct: 453 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 512 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329 + + A G T S S + T D G+ LH P + G + Sbjct: 513 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 572 Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L++ TE S V G N P++ R +TV +G IVL GL++D+ Q + Sbjct: 573 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 632 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 PLL IP +G LFR+ R++T + + P ++ + A+A Sbjct: 633 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 677 Query: 446 NRVNKIYGPKEA 457 NR + I G A Sbjct: 678 NRYDYIQGVTGA 689 >gi|226193920|ref|ZP_03789521.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9] gi|225933865|gb|EEH29851.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9] Length = 566 Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats. Identities = 71/282 (25%), Positives = 136/282 (48%), Gaps = 11/282 (3%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E+ + +S+ L K +++ + V++ + +P A + SPRT+YL G +VG N+I+ Sbjct: 95 EMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQ 154 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G G + +D+ + D L+ +LR+ + + +IRV +DT+VL G V + Q +Q+AV Sbjct: 155 GKSGACRI-IDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAV 213 Query: 162 ELSETFLSQSG--RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 +++ + +++ + V+N+L + QV L+V +AEV + ++ Q+ Sbjct: 214 AIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQM----GS 269 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + G S+ ++ G ++ + A ++ LAEP L Sbjct: 270 AVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVT 329 Query: 280 ISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHF 318 ISGQ A+F +GG+ SS T ++ ++GV Sbjct: 330 ISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGAEV 371 >gi|187930465|ref|YP_001900952.1| general secretion pathway protein D [Ralstonia pickettii 12J] gi|187727355|gb|ACD28520.1| general secretion pathway protein D [Ralstonia pickettii 12J] Length = 807 Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats. Identities = 78/305 (25%), Positives = 121/305 (39%), Gaps = 44/305 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---- 237 + V++ L+ A QV ++ I EV Q+G Q +FG Sbjct: 422 RAVIDDLD-ARRAQVYIESMIVEVTATKASQLGIQWMAGAGGPTTFFGGGTNFGSGANNL 480 Query: 238 --------FVSEGGDFSVK------------GVLDRFSF---------ETVLHALERATA 268 ++ GG S G L+ +F +L AL + Sbjct: 481 INLAGTIATITSGGIGSTAAQTAIGTLSNSVGQLNGGNFGVFNRGSGLGAILSALGSDGS 540 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVT------THDYGVVLHFTP 320 + L+ P L + + A G T S + GA SVT D G+ L P Sbjct: 541 VNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKP 600 Query: 321 TVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 + G + ++I E S V G NA P+ VR +T V G +VL GLL+D+ Q Sbjct: 601 QITDGGLVKMQIFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQ 660 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 ++ +P L IPILGALFR+ R +T + + P +++ A + D+ Y+ D Sbjct: 661 DGEQKVPGLGDIPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGTLSDNRYNYMRD 719 Query: 440 AKAFF 444 + F Sbjct: 720 TQQGF 724 >gi|15595882|ref|NP_249376.1| type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|218893357|ref|YP_002442226.1| putative type II secretion system protein [Pseudomonas aeruginosa LESB58] gi|9946565|gb|AAG04074.1|AE004503_12 probable type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|218773585|emb|CAW29399.1| probable type II secretion system protein [Pseudomonas aeruginosa LESB58] Length = 803 Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 29/328 (8%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++LL+ QV ++ I EV D + G Q Sbjct: 449 QADATTNTLLISAPEPLYRN--LREVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQ 505 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G G + G+ + + Sbjct: 506 AGNLGGNGVFGGVNFGQSALNTAGKNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLAR 565 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313 AL+ L+ P L + +SAS G + + +S+ ++ D G Sbjct: 566 ALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVG 625 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L + EVS + R DT++ L G +VL GL Sbjct: 626 LKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGL 685 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L+D++Q +G+P LS +P +G+LFR + +R +T + + P++V+ A S + Sbjct: 686 LQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMVFLRPYIVRDAAAG-RSITLNR 744 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVE 461 Y A+ R + G +A + Sbjct: 745 YDFIRRAQQRVQPRHDWSVGDMQAPVLP 772 >gi|167736415|ref|ZP_02409189.1| general secretion pathway protein D [Burkholderia pseudomallei 14] gi|167813490|ref|ZP_02445170.1| general secretion pathway protein D [Burkholderia pseudomallei 91] gi|167892116|ref|ZP_02479518.1| general secretion pathway protein D [Burkholderia pseudomallei 7894] Length = 742 Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 52/312 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230 + V++ L+ A QV ++ + E++ +G Q + + +G S Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 445 Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277 G + GG G + +L ++ L+ P L Sbjct: 446 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 505 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329 + + A G T S S + T D G+ LH P + G + Sbjct: 506 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 565 Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L++ TE S V G N P++ R +TV +G IVL GL++D+ Q + Sbjct: 566 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 625 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 PLL IP +G LFR+ R++T + + P ++ + A+A Sbjct: 626 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 670 Query: 446 NRVNKIYGPKEA 457 NR + I G A Sbjct: 671 NRYDYIQGVTGA 682 >gi|54307500|ref|YP_128520.1| putative fimbrial assembly protein [Photobacterium profundum SS9] gi|46911920|emb|CAG18718.1| putative fimbrial assembly protein [Photobacterium profundum SS9] Length = 567 Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 103/264 (39%), Gaps = 26/264 (9%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---------- 229 S K +++ L+I QV ++ I + + ++G + ++ + + Sbjct: 304 SIKDIISALDIP-VKQVQIEARIVTINEGDVDELGVRWGVSKHNGNFTLGGSIESNLGAV 362 Query: 230 ------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + + + L AL+ + ++ P L Sbjct: 363 GLLKDDVSVDDFLNVNLAAQKAGASSIAFQVAKIGDILLDLELSALQSESKAEIISSPRL 422 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q+A G + Y SSS GA SV + L TP + ++ L + Sbjct: 423 VTTNKQTAYIEQGTEIPYLEASSS-GAVSVAFKKAVLSLMVTPQITPDNKLVLDLVVTQD 481 Query: 338 EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 EP V G + S ++ T V + +G TIVL G+ + + + +PLL +P LG Sbjct: 482 EPGKTVVTGIGEAVSINTQRIGTQVLVENGETIVLGGIYQHQVNKSVTKVPLLGDLPYLG 541 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR+S + E+ I TP +V Sbjct: 542 ALFRHSLEEMGKRELLIFITPKIV 565 >gi|76811977|ref|YP_331636.1| general secretion pathway protein D [Burkholderia pseudomallei 1710b] gi|167822031|ref|ZP_02453502.1| general secretion pathway protein D [Burkholderia pseudomallei 9] gi|167900627|ref|ZP_02487832.1| general secretion pathway protein D [Burkholderia pseudomallei NCTC 13177] gi|167921121|ref|ZP_02508212.1| general secretion pathway protein D [Burkholderia pseudomallei BCC215] gi|254194560|ref|ZP_04900991.1| general secretion pathway protein D [Burkholderia pseudomallei S13] gi|76581430|gb|ABA50905.1| general secretion pathway protein D [Burkholderia pseudomallei 1710b] gi|169651310|gb|EDS84003.1| general secretion pathway protein D [Burkholderia pseudomallei S13] Length = 750 Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 52/312 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230 + V++ L+ A QV ++ + E++ +G Q + + +G S Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 445 Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277 G + GG G + +L ++ L+ P L Sbjct: 446 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 505 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329 + + A G T S S + T D G+ LH P + G + Sbjct: 506 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 565 Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L++ TE S V G N P++ R +TV +G IVL GL++D+ Q + Sbjct: 566 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 625 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 PLL IP +G LFR+ R++T + + P ++ + A+A Sbjct: 626 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 670 Query: 446 NRVNKIYGPKEA 457 NR + I G A Sbjct: 671 NRYDYIQGVTGA 682 >gi|206577210|ref|YP_002240367.1| pullulanase secretion envelope protein PulD [Klebsiella pneumoniae 342] gi|206566268|gb|ACI08044.1| pullulanase secretion envelope protein PulD [Klebsiella pneumoniae 342] Length = 648 Score = 187 bits (474), Expect = 5e-45, Method: Composition-based stats. Identities = 69/353 (19%), Positives = 134/353 (37%), Gaps = 49/353 (13%) Query: 146 VLHGMVRTIQDSQR------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----- 194 VL G+ ++Q+ ++ A++ + + N +++ VMN L Sbjct: 273 VLTGISSSLQNDKQSAKPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 332 Query: 195 -QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--------- 244 QV ++ IAEV+ +G Q + ++G ++ + V G + Sbjct: 333 PQVLVEAIIAEVQDADGLNLGIQWA--NKNAGMTQFTNSGLPISTVIAGANQYNKDGTVS 390 Query: 245 ----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + + ++ +L AL +T LA P++ + A+F G + Sbjct: 391 SSLASALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVP 450 Query: 295 YKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-- 348 T S +T +V G+ L P + + L I+ EVS ++ Sbjct: 451 VLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDL 510 Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 ++ R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + Sbjct: 511 GATFNTRTVNNAVLVGSGETVVVGGLLDKSVTDTADKVPLLGDIPVIGALFRSESKKVSK 570 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 + + P +++ D Y + F+ K++SE Sbjct: 571 RNLMLFIRPTIIRD---------RDEYRQASSGQYTAFDNAQTKQRGKDSSEA 614 >gi|332995712|gb|AEF05767.1| general secretion pathway protein D [Alteromonas sp. SN2] Length = 680 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 70/322 (21%), Positives = 119/322 (36%), Gaps = 50/322 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQS---GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 G + S R V + S + S ++V+ L+I QV ++ I E Sbjct: 299 SGSTNSRGSSNRDVSIDAHEDSNALVITAEPDMMRSLEEVVRQLDIR-RAQVQVEAIIVE 357 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------------------ 240 V +G Q + G V+ Sbjct: 358 VFEGDGTTLGVQWVSENGGGTQFSNGVIPVGSLAVALKEAEDDTDTEAYVTDEGAVVRVT 417 Query: 241 --------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + + G++D + V+ A+ T LA P LT + + A Sbjct: 418 TTDEGDYTSLASLLGSANGLIAGIIDN-GWGAVVQAVSTDTNSNVLATPHLTTMDNEEAY 476 Query: 287 FTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 F G + T +S+ +V + G+ L TP + + L I+ EVS Sbjct: 477 FIVGQEVPIITGTSTGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQLLIEQEVSSVSG 536 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + S R+ TTV + GGTIVL GL+ +D+Q+ +PLL IPI+G LF+++ Sbjct: 537 ATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGDIPIIGNLFKST 594 Query: 402 RFNREETEIFIAATPFLVKPVA 423 ++ + + + P +V+ A Sbjct: 595 STSKRKRNLMVFLKPTIVRDGA 616 >gi|149378291|ref|ZP_01896001.1| Type II secretory pathway, component PulD [Marinobacter algicola DG893] gi|149357425|gb|EDM45937.1| Type II secretory pathway, component PulD [Marinobacter algicola DG893] Length = 650 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 110/267 (41%), Gaps = 27/267 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--- 235 ++ ++ L++ QV ++ I E+ ++ + +G Q ++ S + +F Sbjct: 337 QEAEMIVKALDVR-RAQVMIEAAIVEISDELGQDLGVQLALGDESGESTPVAGTNFNNVG 395 Query: 236 -------GKFVSEGGDFSVKGVL---------DRFSFETVLHALERATAIRTLAEPTLTA 279 G +S+ G + + S+ +L AL + A L+ P++ Sbjct: 396 RSLGDVLGAILSDSVIAPATGGITIGAGQRNENGVSWGVLLQALSTSAAANLLSTPSIIT 455 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + Q + G ++T S+ T++ D G+ L TPT+ + G + L + Sbjct: 456 LDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERRDIGLTLKVTPTISADGLVRLVV 515 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + V + R+ TTV G TIVL GL DD+Q K +PLL IP Sbjct: 516 EQTTENIGDSVESASDIITNKREIKTTVLADDGETIVLGGLTTDDLQVNKSKVPLLGDIP 575 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 +LG LF + R + + + P ++ Sbjct: 576 VLGRLFSSESERRVKRNLLVFLRPTIM 602 >gi|77459397|ref|YP_348904.1| type II and III secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77383400|gb|ABA74913.1| general secretion pathway protein D [Pseudomonas fluorescens Pf0-1] Length = 783 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 79/340 (23%), Positives = 135/340 (39%), Gaps = 39/340 (11%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++LL+ QV ++ I EV D + G Q Sbjct: 434 QADATTNTLLISAPEPLYRN--LREVIDLLDQR-RAQVVIESLIVEVGEDDASEFGVQWQ 490 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFS------------------VKGVLDRFSFETVL 260 TG+ G A+ GG ++ G S + G+ + + Sbjct: 491 -TGNLGGKGVIGGANLGGSGINVNGKTSLDVLPQGLNLGYVNGTVDIPGIGKILDLKVLA 549 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDY 312 AL+ L+ P L + ++AS G + + S TG +VT + Sbjct: 550 RALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEV 609 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIV 369 G+ L+ P + G + L I EVS +A + R DT++ L G +V Sbjct: 610 GLKLNVRPQISEGGTVKLDIYQEVSSIDERASAAANSAGIVTSKRALDTSILLDDGQIMV 669 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLS 428 L GLL+D Q + +P LS IP +GALFRN R + +T + + P++++ A R ++ Sbjct: 670 LGGLLQDGYSQSNDAVPWLSNIPGIGALFRNERRSITKTNLMVFLRPYIIRDSAAGRSIT 729 Query: 429 RPDDHYSVEDDA-----KAFFFNRVNKIYGPKEASEVEGQ 463 + +++ + P A V Sbjct: 730 LNRYDFMRRAQGGLQPERSWAMPDMQAPQLPATAQGVPAP 769 >gi|4139236|gb|AAD05173.1| general secretory pathway protein D [Burkholderia pseudomallei 1026b] Length = 750 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 52/312 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230 + V++ L+ A QV ++ + E++ +G Q + + +G S Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 445 Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277 G + GG G + +L ++ L+ P L Sbjct: 446 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 505 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329 + + A G T S S + T D G+ LH P + G + Sbjct: 506 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 565 Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L++ TE S V G N P++ R +TV +G IVL GL++D+ Q + Sbjct: 566 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 625 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 PLL IP +G LFR+ R++T + + P ++ + A+A Sbjct: 626 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 670 Query: 446 NRVNKIYGPKEA 457 NR + I G A Sbjct: 671 NRYDYIQGVTGA 682 >gi|167843644|ref|ZP_02469152.1| general secretion pathway protein D [Burkholderia pseudomallei B7210] Length = 743 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 52/312 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230 + V++ L+ A QV ++ + E++ +G Q + + +G S Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 445 Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277 G + GG G + +L ++ L+ P L Sbjct: 446 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 505 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329 + + A G T S S + T D G+ LH P + G + Sbjct: 506 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 565 Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L++ TE S V G N P++ R +TV +G IVL GL++D+ Q + Sbjct: 566 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 625 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 PLL IP +G LFR+ R++T + + P ++ + A+A Sbjct: 626 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 670 Query: 446 NRVNKIYGPKEA 457 NR + I G A Sbjct: 671 NRYDYIQGVTGA 682 >gi|149909433|ref|ZP_01898088.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Moritella sp. PE36] gi|149807543|gb|EDM67492.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) [Moritella sp. PE36] Length = 747 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 114/267 (42%), Gaps = 28/267 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------- 224 +S K+++ +L++ QV ++ + V +I ++G + ++GS+ Sbjct: 479 ASVKRIIEVLDVP-VRQVIIEARMVSVVDNISDELGIRWGLSGSTDIGSGFGLSSGSIEG 537 Query: 225 ----------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + + F + G+ + + L ALE +A Sbjct: 538 NDSLAGGSVPAIGDRLNVNLPVASPAGSIAFQIAGLANGQILDLELSALEAEQKAEVIAS 597 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--I 332 P +T +SA G + Y SSS+GAT++ + L TP + +I L I Sbjct: 598 PRITTTDKKSAYIEQGTEIPYVE-SSSSGATTIAFKKAVLGLWVTPHITPDNKIILDLKI 656 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + + G+ S + T V + +G TIVL G+ K +I+Q+ +P+L IP Sbjct: 657 NQDTRGEDVKTVGGEAVSIDTQVISTQVLVENGETIVLGGIFKHEIKQIVTKVPILGDIP 716 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 LG LFR+++ ++ E+ I TP +V Sbjct: 717 WLGVLFRSTKNISQKRELLIFVTPKVV 743 >gi|163857177|ref|YP_001631475.1| general secretion pathway protein D [Bordetella petrii DSM 12804] gi|163260905|emb|CAP43207.1| general secretion pathway protein D [Bordetella petrii] Length = 862 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 76/351 (21%), Positives = 131/351 (37%), Gaps = 51/351 (14%) Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + D V G T+Q L + + S ++V++ L+ QV + Sbjct: 370 DGAGDAVSYSGGGATVQADPSTNTLIIS------APEPLYRSLREVIDQLDQR-RAQVLV 422 Query: 199 KVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFS----------- 246 + I EV ++ + G Q + GS G + GG + G + Sbjct: 423 ESLIVEVSQEKAAEFGIQWMTGAGSLDGSGFIGGTNLGGSGIGSAGTGATTLDALGRGLT 482 Query: 247 ---VKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 VKG +D + + AL+ + L+ P L + + AS G + T Sbjct: 483 LGLVKGTVDVLGNQVINLNVLARALQNSGEANILSTPNLLTLDNEPASILVGKTVPFVTG 542 Query: 299 S--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMP 349 S+ ++ D G+ L+ P + G + L I EVS ++ Sbjct: 543 QYVTSGSAGSNNPFQTIEREDIGLKLNIRPQISEGGAVKLDIYQEVSSIDEASSSETTGL 602 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R DT+V + G IVL GLL+D + +P LS IP+LGALFR + R ++ Sbjct: 603 VTNKRAIDTSVLVDDGQIIVLGGLLEDRVTSTTSAVPGLSSIPLLGALFRYDKRQRTKSN 662 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 + + PF+V+ D+ NR + + + ++ Sbjct: 663 LMVFLRPFVVRD---------------ARDSANVTLNRYDYMRRAQSQAQP 698 >gi|119475138|ref|ZP_01615491.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2143] gi|119451341|gb|EAW32574.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2143] Length = 733 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 114/284 (40%), Gaps = 43/284 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSF- 230 ++V+ LL++ QV ++ I +++G + G + G ++S Sbjct: 451 RRVIRLLDVP-VRQVLVEARIVIANSSFDEELGVKWGAAGVNQINGDNQLFFGGNTESIE 509 Query: 231 ---------------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 A + + G +V V + L+AL Sbjct: 510 ASRNSVADAMINIAQGNAITEAILAPDALNVDLGVANPTGSVAVGFVSSDVILQMELNAL 569 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E +++P + Q A SG + Y+ SS+ G T+++ + + L TP++ Sbjct: 570 ESQGRGEIVSQPKVITGDKQEAIIKSGSEVPYQE-SSANGETTISFKEAVLKLQVTPSIT 628 Query: 324 SPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 RI ++++ V N G +P+ + T V + +G T+VL G+ + + Sbjct: 629 PDDRIIMKLEINQDSIGTLVPSGNGGVVPTIDTTELTTQVLVGNGETVVLGGVFRTVDVE 688 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + +P+L IP LG LF N+ +E+TE I TP ++ + Sbjct: 689 SESKVPVLGDIPYLGRLFTNTTVTQEKTETLIFITPRILADTLI 732 >gi|83647301|ref|YP_435736.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC 2396] gi|83635344|gb|ABC31311.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC 2396] Length = 647 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 109/264 (41%), Gaps = 26/264 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236 + ++ L++ QV ++ I E+ + +Q+G Q + + + +F Sbjct: 333 EAIVQQLDVR-RAQVLIEAAIVEISDGLSRQLGVQMAAGDLTGKSGPATVTNFTNVGISA 391 Query: 237 ----------KFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S GGD + + R + ++ AL + L+ P++ + Sbjct: 392 SAILAAIASNSTPSIGGDIAAVAIGEAEGRKGWGALIQALGTSGQANLLSTPSIITMDNL 451 Query: 284 SASFTSGGQHLY-------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + G + T +S T++ D G+ L TP++ + L I+ E Sbjct: 452 QSEIIVGQNVPFRTGQTGTGTDGTSNPFTTIERQDVGLTLRVTPSISDGDLVRLEIEQES 511 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 S + R+ T+V + TIVL GL+ ++ + + +PLL IP+LGA Sbjct: 512 SSIAPSNESASDIITNKRQIKTSVLADNAETIVLGGLMSENYKLSEAKVPLLGDIPLLGA 571 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 LFR+++ +++ + + P +++ Sbjct: 572 LFRSTKREKDKQNLLVFLRPTILR 595 >gi|110833080|ref|YP_691939.1| type II secretion system protein [Alcanivorax borkumensis SK2] gi|110646191|emb|CAL15667.1| type II secretion system protein, probable [Alcanivorax borkumensis SK2] Length = 406 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 81/251 (32%), Positives = 122/251 (48%), Gaps = 11/251 (4%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV + I EV R L GF++S A+ GG F + Sbjct: 141 QVQTDIRIMEVSRSKLNSFGFEYSNIFDGGNTQVGVASPGGGGPSDSFNLFRLG-----K 195 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + T+++ALE TLA+P+LTA+SGQ+A+F SGG+ T S + G V +G+ Sbjct: 196 NSTTIINALESGGFAYTLAKPSLTALSGQTATFLSGGEFPVPTRSDNNG-VQVEFKSFGI 254 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVL 370 L TPTV+S +I L++ EVSE +P RVR+++TTV L G T ++ Sbjct: 255 GLALTPTVISGDQIILKVAPEVSELDFSAGVESAGTSIPGLRVRRSETTVSLAPGETFII 314 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL-SR 429 +GL+ + IP L +P+LGA FR+ + +RE+ E+ + TP LV P + + Sbjct: 315 SGLVSQNTVNNSNRIPGLGNLPVLGAFFRSGQLSREDKEMVMVVTPHLVSPGSSTEAGPL 374 Query: 430 PDDHYSVEDDA 440 P Y Sbjct: 375 PGAGYHNSSTG 385 >gi|167908851|ref|ZP_02495942.1| general secretion pathway protein D [Burkholderia pseudomallei 112] Length = 745 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 52/312 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230 + V++ L+ A QV ++ + E++ +G Q + + +G S Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 445 Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277 G + GG G + +L ++ L+ P L Sbjct: 446 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 505 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329 + + A G T S S + T D G+ LH P + G + Sbjct: 506 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 565 Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L++ TE S V G N P++ R +TV +G IVL GL++D+ Q + Sbjct: 566 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 625 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 PLL IP +G LFR+ R++T + + P ++ + A+A Sbjct: 626 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 670 Query: 446 NRVNKIYGPKEA 457 NR + I G A Sbjct: 671 NRYDYIQGVTGA 682 >gi|77359203|ref|YP_338778.1| general secretion pathway protein D [Pseudoalteromonas haloplanktis TAC125] gi|76874114|emb|CAI85335.1| General secretion pathway protein D [Pseudoalteromonas haloplanktis TAC125] Length = 688 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 113/286 (39%), Gaps = 47/286 (16%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------- 217 S + V+ L+I QV ++ I EV G Q Sbjct: 340 SLESVIERLDIR-RAQVLVEAIIIEVMEGDGINFGLQWISEQGGMLQFNNGTTVPVGALA 398 Query: 218 -------------SITGSSSGPSK----SFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +I G+ SG + D+G GG + + + + ++ Sbjct: 399 VAAEQARDTTVSKNIIGTESGTITQVDETTKGDYGPLASLLGGINGLAMGVIKNDWGAIV 458 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTHDYGVV 315 A+ + LA P++T + + AS G + T S + + V + G+ Sbjct: 459 QAVSTDSNSNILATPSITTMDNEEASILVGQEVPIITGSQTGSNNTNPFQTVERQEVGIK 518 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + + L I+ EVS V G A D+ S R TTV GG +VL GL+ Sbjct: 519 LKVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRSIKTTVMADDGGMVVLGGLID 576 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +D+Q+ +PLL IPILG LF+++ R + + + P +++ Sbjct: 577 EDVQESVSKVPLLGDIPILGHLFKSTNTTRRKRNLIVFIRPTIIRD 622 >gi|121610459|ref|YP_998266.1| general secretion pathway protein D [Verminephrobacter eiseniae EF01-2] gi|121555099|gb|ABM59248.1| general secretion pathway protein D [Verminephrobacter eiseniae EF01-2] Length = 740 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 59/286 (20%), Positives = 111/286 (38%), Gaps = 37/286 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------TGSSSG 225 + V+ L+ QV ++ I E+ + L Q G Q +G S G Sbjct: 397 RAVIEQLD-GRRAQVLVESLIVEISANKLAQFGVQWQSLLGKKGASLLGAIGTNSGQSGG 455 Query: 226 PSKSFAADFGGKFVSEGGDFS-----------VKGVLDRFSFETVLHALERATAIRTLAE 274 S A + + + ++ + + L+ + L+ Sbjct: 456 NITSLTAALASGSTTSIATAANSLGQGMNLLLAPRINGQYYLGALANFLQNSGDANVLST 515 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPG 326 P L + + A G + T S + + T+V D G++L P + G Sbjct: 516 PNLMTLDNEEAKIVIGNNVPFVTGSYANSSSNSTVNPFTTVQRQDVGLMLRVRPQINENG 575 Query: 327 RIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L + EVS+ + + P+ R ++ V + G IV+ GLL+D ++ + Sbjct: 576 TVKLSVYQEVSKIDASTLTSPNGPTTSKRSIESNVLVEDGSIIVIGGLLEDSYSLNQDKV 635 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 P+L +P+LG LFR+ + R +T + I P +++ A D+ D Sbjct: 636 PVLGDMPVLGNLFRSEKRTRNKTNLMIFLRPTVLRSSASSDILTAD 681 >gi|315125823|ref|YP_004067826.1| general secretion pathway protein D [Pseudoalteromonas sp. SM9913] gi|315014337|gb|ADT67675.1| general secretion pathway protein D [Pseudoalteromonas sp. SM9913] Length = 688 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 113/286 (39%), Gaps = 47/286 (16%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------- 217 S + V+ L+I QV ++ I EV G Q Sbjct: 340 SLESVIERLDIR-RAQVLVEAIIIEVMEGDGVNFGLQWISEQGGMLQFNNGTTVPVGSLA 398 Query: 218 -------------SITGSSSGPSK----SFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +I G+ SG + D+G GG + + + + ++ Sbjct: 399 VAAEQARDKTVTKNIIGTESGTVTKYDETTEGDYGPLASLLGGINGLAMGVIKNDWGAIV 458 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315 A+ T LA P++T + + AS G + T S + +V + G+ Sbjct: 459 QAVSTDTNSNILATPSITTMDNEEASILVGQEVPIITGSQTGSNNENPFQTVERQEVGIK 518 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + + L I+ EVS V G A D+ S R TTV GG +VL GL+ Sbjct: 519 LKVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRAIKTTVMADDGGMVVLGGLID 576 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +D+Q+ +PLL IPILG LF+++ + + + + P +++ Sbjct: 577 EDVQESVSKVPLLGDIPILGHLFKSTNTTKRKRNLIVFIRPTIIRD 622 >gi|153840376|ref|ZP_01993043.1| general secretion pathway protein D [Vibrio parahaemolyticus AQ3810] gi|149745960|gb|EDM57090.1| general secretion pathway protein D [Vibrio parahaemolyticus AQ3810] Length = 552 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 26/317 (8%) Query: 132 ADSNIRVEMVSDTVVLHG---------MVRTIQDSQRAVELSETFLSQSGRN-------Q 175 + I ++++VL V + D +RA L E + + Q Sbjct: 184 GEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDIRRAQVLIEALIVEMAEGDGINLGVQ 243 Query: 176 YANSSSKKVMNLLNIAGED-QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 + + + V+ N QV + E +D+ K + +S T + D+ Sbjct: 244 WGSLETGAVIQYGNTGAPIGQVMVG---LEEAKDVTKTESYWNSDTNKWENRQYTEEGDY 300 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + GG + + ++ A+ + L+ P++T + ASF G + Sbjct: 301 STLASALGGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSITVMDNGEASFIVGEEVP 360 Query: 295 YKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 T S++ +V + G+ L P + + L I+ EVS V+G N Sbjct: 361 VITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDV 419 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LF+++ E+ Sbjct: 420 RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHLFKSTSTQTEKRN 479 Query: 410 IFIAATPFLVKPVAMRD 426 + + P +++ D Sbjct: 480 LMVFIKPTIIRDGMTAD 496 >gi|239998226|ref|ZP_04718150.1| PilQ [Neisseria gonorrhoeae 35/02] gi|240112199|ref|ZP_04726689.1| PilQ [Neisseria gonorrhoeae MS11] gi|268594082|ref|ZP_06128249.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae 35/02] gi|268598258|ref|ZP_06132425.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae MS11] gi|268547471|gb|EEZ42889.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae 35/02] gi|268582389|gb|EEZ47065.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae MS11] gi|317163512|gb|ADV07053.1| PilQ [Neisseria gonorrhoeae TCDC-NG08107] Length = 731 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 104/260 (40%), Gaps = 22/260 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------SSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 465 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523 Query: 236 GK------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + ++S G S T + L TP + G+I + ++ P Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643 Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+ Sbjct: 644 CASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703 Query: 401 SRFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 704 RGKKTDRRELLIFITPRIID 723 >gi|90580860|ref|ZP_01236662.1| putative fimbrial assembly protein [Vibrio angustum S14] gi|90437931|gb|EAS63120.1| putative fimbrial assembly protein [Vibrio angustum S14] Length = 574 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 60/265 (22%), Positives = 106/265 (40%), Gaps = 29/265 (10%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S K +++ L+I QV ++ I + + ++G + + S + G Sbjct: 312 SIKDIVSSLDIP-VKQVQIEARIVTINEGDIDELGVRWGV--SKVNGDTTVGGSIEGNLA 368 Query: 240 SEGG---DFSVKGVLD--------------------RFSFETVLHALERATAIRTLAEPT 276 S G D +V L+ + L AL+ ++ P Sbjct: 369 SSGLLGEDATVDDFLNVNLGAGAGAASIAFQVAKLGNILLDLELSALQTENKAEIISSPR 428 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L + ++A G + Y SSS GATSV+ + L TP + ++ L ++ Sbjct: 429 LMTTNKKTAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVTPQITPDDKLVLDLEVTQ 487 Query: 337 SEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + G S ++ T V + +G T+VL G+ + + + +PLL IP+L Sbjct: 488 DNKGEDVPTGTGTAISIDTQRIGTQVLVNNGETVVLGGIYQHSMTNVTRKVPLLGDIPVL 547 Query: 395 GALFRNSRFNREETEIFIAATPFLV 419 GALFR+ + E+ I TP +V Sbjct: 548 GALFRHKMEQMGKRELLIFVTPKIV 572 >gi|300690208|ref|YP_003751203.1| fimbrial type-4 assembly protein [Ralstonia solanacearum PSI07] gi|299077268|emb|CBJ49894.1| fimbrial type-4 assembly protein [Ralstonia solanacearum PSI07] Length = 717 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 99/249 (39%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------------PSKSF 230 QV ++ I E + +G + ++G P+ SF Sbjct: 465 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPVTTNGTWDNSPALSF 524 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 525 PANGINGVSAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 584 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV + L TP + G + L + +V++ +G + + Sbjct: 585 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLDV--DVNKDSVGTQTTNGFA 641 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+ Sbjct: 642 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 701 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 702 LVFLTPRVL 710 >gi|262370143|ref|ZP_06063470.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262315182|gb|EEY96222.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 785 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 64/257 (24%), Positives = 100/257 (38%), Gaps = 30/257 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------- 242 QV ++ TI EV + Q+G Q ++ SSG + G S Sbjct: 382 RQQVLIEATILEVEGNDADQLGVQWAMGDLSSGVGIINFDNIGSSLKSIAANYLTGGGAG 441 Query: 243 -------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 GD+ R + ++ AL+ T L+ P++ + + A Sbjct: 442 AASAIGAGGSLILGDYKEGSDGSRQLYGAMIQALKSNTKSNLLSTPSIVTMDNEEAYIVV 501 Query: 290 GGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 G + T S ST + T++ D GV L P + G I L I+ EVS+ Sbjct: 502 GENVPFVTGSVSTTSSGTANPYTTIERKDVGVTLKVVPHIGEGGTIRLEIEQEVSDVKAN 561 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 R T+V G TIVL GL+ D+ ++ IP L IP LG LFR+ Sbjct: 562 KGQAQDLVTSKRAIKTSVLAEHGNTIVLGGLISDNTSYSRQSIPGLGAIPGLGRLFRSDG 621 Query: 403 FNREETEIFIAATPFLV 419 + ++ + + P +V Sbjct: 622 KSDQKRNLLVFIHPTIV 638 >gi|331017211|gb|EGH97267.1| general secretion pathway protein D [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 361 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 108/262 (41%), Gaps = 19/262 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ I EV+ +G Q + +SG + + G + G ++ Sbjct: 87 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 146 Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + + L ALE + L+ P+L ++ Q A G S +T Sbjct: 147 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 206 Query: 305 ------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRK 355 +SV GV+L P + G + + IQ +VS+ G + D+ P R Sbjct: 207 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 266 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V SG T++L GL+K D + +P L +IP L LF NS +++ TE+ + T Sbjct: 267 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 326 Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437 P ++ + + D Y + Sbjct: 327 PRVI--TSSSQARQVTDDYRQQ 346 >gi|240013410|ref|ZP_04720323.1| PilQ [Neisseria gonorrhoeae DGI18] gi|240015851|ref|ZP_04722391.1| PilQ [Neisseria gonorrhoeae FA6140] gi|240120480|ref|ZP_04733442.1| PilQ [Neisseria gonorrhoeae PID24-1] Length = 731 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 104/260 (40%), Gaps = 22/260 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------SSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 465 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523 Query: 236 GK------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + ++S G S T + L TP + G+I + ++ P Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643 Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+ Sbjct: 644 CASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703 Query: 401 SRFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 704 RGKKTDRRELLIFITPRIID 723 >gi|262170336|ref|ZP_06038014.1| type II secretory pathway component PulD [Vibrio mimicus MB-451] gi|261891412|gb|EEY37398.1| type II secretory pathway component PulD [Vibrio mimicus MB-451] Length = 675 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 68/375 (18%), Positives = 134/375 (35%), Gaps = 72/375 (19%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181 + L+R I ++ + + V++ +D ++ +SE ++ G Q S Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQQTTSKR 304 Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216 +VM N L + QV ++ I E+ +G Q Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364 Query: 217 HS-------ITGSSSGPS---------------------------------KSFAADFGG 236 I ++G S + D+ Sbjct: 365 WGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKRPIRDSNTGAIKYYEETTTKGDYST 424 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G + + +++A+ + L+ P++T + ASF G + Sbjct: 425 LASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGEASFIVGEEVPVI 484 Query: 297 TVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 T S++ +V + G+ L P + + L I+ EVS V+G N + Sbjct: 485 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRF 543 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR++ E+ + Sbjct: 544 AKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLM 603 Query: 412 IAATPFLVKPVAMRD 426 + P +++ D Sbjct: 604 VFIKPTIIRDGVTAD 618 >gi|262402018|ref|ZP_06078583.1| type II secretory pathway component PulD [Vibrio sp. RC586] gi|262351990|gb|EEZ01121.1| type II secretory pathway component PulD [Vibrio sp. RC586] Length = 675 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 57/289 (19%), Positives = 110/289 (38%), Gaps = 47/289 (16%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPS-------- 227 +V+ L+I QV ++ I E+ +G Q I ++G S Sbjct: 332 EVIGQLDIR-RAQVLIEALIVEMSEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGL 390 Query: 228 -------------------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 + D+ + G + + +++A Sbjct: 391 EEAKDTTEKKPIRNSDTGEIKYYEETTTKGDYSTLASALSGIQGAAVSIALGDWTALINA 450 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317 + + L+ P++T + ASF G + T S++ +V + G+ L Sbjct: 451 VSNDSKSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLK 510 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + Sbjct: 511 VVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLIDER 569 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + +PLL IP+LG LFR++ E+ + + P +++ D Sbjct: 570 AIESESKVPLLGDIPVLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTAD 618 >gi|224368216|ref|YP_002602379.1| PilQ [Desulfobacterium autotrophicum HRM2] gi|223690932|gb|ACN14215.1| PilQ [Desulfobacterium autotrophicum HRM2] Length = 727 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 109/240 (45%), Gaps = 4/240 (1%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 +K++++ L+ Q+ + + EV ++ K +G S++ +++ ++ Sbjct: 486 AKELIHRLDKVTP-QIMISARVVEVNKNFSKSLGIDWSVSKNNANSGFDVIMNYPVASDG 544 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G + + + L A E ++ ++ P + + + A G ++ Y Sbjct: 545 SLGFDFSRIFGTELALDATLSASEIKGDVKIISSPKILTLDNKKAKIKQGLEYAYLE-RD 603 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 +G +SV + ++L TP V RIG+ + ++ V+ +PS +A+T + Sbjct: 604 DSGGSSVLFKNIDLLLEVTPHVTPDNRIGMSVLITKNDLASVVDG--VPSLSTNEAETEL 661 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G TIV+ G++K+ + G P LS IP+LG LF + + E+ I TP +V+ Sbjct: 662 LVNDGNTIVIGGIVKNTSSTSETGFPGLSNIPLLGKLFGSDSTEDTKNELLIFITPTIVQ 721 >gi|288937072|ref|YP_003441131.1| general secretion pathway protein D [Klebsiella variicola At-22] gi|290512493|ref|ZP_06551859.1| general secretion pathway protein D [Klebsiella sp. 1_1_55] gi|288891781|gb|ADC60099.1| general secretion pathway protein D [Klebsiella variicola At-22] gi|289774834|gb|EFD82836.1| general secretion pathway protein D [Klebsiella sp. 1_1_55] Length = 651 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 69/353 (19%), Positives = 134/353 (37%), Gaps = 49/353 (13%) Query: 146 VLHGMVRTIQDSQR------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED----- 194 VL G+ ++Q+ ++ A++ + + N +++ VMN L Sbjct: 276 VLTGISSSLQNDKQSAKPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 335 Query: 195 -QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--------- 244 QV ++ IAEV+ +G Q + ++G ++ + V G + Sbjct: 336 PQVLVEAIIAEVQDADGLNLGIQWA--NKNAGMTQFTNSGLPISTVIAGANQYNKDGTVS 393 Query: 245 ----------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + + ++ +L AL +T LA P++ + A+F G + Sbjct: 394 SSLASALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVP 453 Query: 295 YKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-- 348 T S +T +V G+ L P + + L I+ EVS ++ Sbjct: 454 VLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDL 513 Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 ++ R + V + SG T+V+ GLL + + +PLL IP++GALFR+ + Sbjct: 514 GATFNTRTVNNAVLVGSGETVVVGGLLDKSVTDTADKVPLLGDIPVIGALFRSESKKVSK 573 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 + + P +++ D Y + F+ K++SE Sbjct: 574 RNLMLFIRPTIIRD---------RDEYRQASSGQYTAFDNAQTKQRGKDSSEA 617 >gi|149377297|ref|ZP_01895043.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter algicola DG893] gi|149358394|gb|EDM46870.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter algicola DG893] Length = 694 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 71/358 (19%), Positives = 142/358 (39%), Gaps = 46/358 (12%) Query: 105 DGKQMLNLDILIERDIAHLEMTL-----RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 D +Q+ N+ ++ D L ++ + +R++++ V + + Sbjct: 336 DKRQIGNVLLVAPADEIAAREKLELETSKQIAELAPVRLDIIQVNYAKAADVVALIQADE 395 Query: 160 AVELSETFLSQSGRNQYAN--------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + S F+S R + +++++ ++ QV+++ I + ++ + Sbjct: 396 ELISSRGFVSSDARTNTISVRETSEKLDEIRRLVSTWDVP-VRQVSIEARIVRAQTNVAE 454 Query: 212 QIGFQH--------------SITGSSSGPSKSFAADFG---------------GKFVSEG 242 +G + S+ GS ++ A G G Sbjct: 455 NLGVRWGGAAYDVRGDGSVISVGGSQGAVGEARDAANGNNNTITFPGALAVDLGVTGQGA 514 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F+V D F + L ALE +++P + Q+A SG + Y+ SSS Sbjct: 515 SSFAVGWGSDDFLVDLELSALESDGQAEVVSQPRVVTADRQTAKIKSGEEIPYQEASSS- 573 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 GATSV+ + + L TP + +I + + V++ G +P+ + T V + Sbjct: 574 GATSVSFKEAALSLEVTPQITPDDKIIMDL--VVNQDSRGEVTAGIPAINTNEVTTQVLV 631 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +G T+VL G+ + ++ P L IP LG LF+ + E +E+ I TP ++K Sbjct: 632 GNGETVVLGGIFQSEVATTTTKTPFLGDIPYLGRLFKRTEHIDERSELLIFITPKIIK 689 >gi|157372484|ref|YP_001480473.1| general secretion pathway protein D [Serratia proteamaculans 568] gi|157324248|gb|ABV43345.1| general secretion pathway protein D [Serratia proteamaculans 568] Length = 660 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 71/348 (20%), Positives = 139/348 (39%), Gaps = 35/348 (10%) Query: 146 VLHGMVRTIQDSQRAV----ELSETFLSQSGRNQYA---------NSSSKKVMNLLNIAG 192 VL G+ +QD ++ V + + + ++ A S+ +KV+ L+I Sbjct: 301 VLSGVSANLQDEKKTVGNNVSVMKNMVIKADEQTNALIINATPDVMSNLEKVIEQLDIR- 359 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF--SVKGV 250 QV ++ I E++ +G Q + + A F + + G+ Sbjct: 360 RAQVLVEAVIVEMQNADGLNLGIQWANRYGGGTQFGNAQAQIAPGFKGGMTEVFKNANGL 419 Query: 251 LDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--- 304 + F ++ +L A+ + LA P++ + + A F+ G T S +T + Sbjct: 420 VTGFYSGNWAGLLTAISNQSQNNILATPSIMTLDNEDAEFSVGQDVPILTGSQTTNSDNV 479 Query: 305 -TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTV 360 +V G+ L P + + L+I+ EVS + ++ +R + TV Sbjct: 480 FNTVARKTVGIKLKVKPQINKGQSVLLQIEQEVSSVAENSSVDKDNLGATFNIRTVNNTV 539 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + SG T+V+ GLL K +P L +IP+LGALFR++ + + + P +++ Sbjct: 540 LVESGETVVVGGLLDKSQSDSKSAVPFLERIPLLGALFRSTSHKESKRNLILFIRPTVIR 599 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 + Y+ E KA F ++ P + + G+ Sbjct: 600 ---------STEEYAQESMRKAARFRSLDAQPLPLKTHAEAQLDRVGS 638 >gi|325981841|ref|YP_004294243.1| type IV pilus secretin PilQ [Nitrosomonas sp. AL212] gi|325531360|gb|ADZ26081.1| type IV pilus secretin PilQ [Nitrosomonas sp. AL212] Length = 698 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 105/271 (38%), Gaps = 32/271 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224 +K + L++ E QV ++ I E + + +G + I +S Sbjct: 426 RKRIQKLDVF-ERQVMIEARIVEATDNFSRNLGARFGIQNASGLGDQTLGVSGNLTGSSA 484 Query: 225 ---GPSKSFAADFGGKFVSEGGDFSVKG----------VLDRFSFETVLHALERATAIRT 271 G S A + + + G + + L ALE R Sbjct: 485 LAAGGGVSGANNLNVNLPAAAATGLLGGPAALGLSLMKINNNRLINLELSALETDQKGRV 544 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P + G A G + ++ +SS GATS+ D + L P + G+I + Sbjct: 545 IASPRVVTAHGVEAIIEQGDRIPFQQATSS-GATSIRFMDATLRLRVKPLITYNGQIDME 603 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + +N P+ ++ T V + +GGT+V+ G+ ++ +P+L I Sbjct: 604 LNVNQDRIGAIINQFLPPAINTKQVTTKVLVENGGTVVIGGIFDRTENRVVNKVPMLGDI 663 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPV 422 P+LG +FRN+ + E+ I TP ++ Sbjct: 664 PVLGHVFRNTTRVDNKRELLIFVTPRILNDS 694 >gi|194097721|ref|YP_002000762.1| PilQ [Neisseria gonorrhoeae NCCP11945] gi|240124975|ref|ZP_04737861.1| PilQ [Neisseria gonorrhoeae SK-92-679] gi|240127489|ref|ZP_04740150.1| PilQ [Neisseria gonorrhoeae SK-93-1035] gi|254493004|ref|ZP_05106175.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae 1291] gi|268683559|ref|ZP_06150421.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae SK-92-679] gi|268685861|ref|ZP_06152723.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae SK-93-1035] gi|193933011|gb|ACF28835.1| PilQ [Neisseria gonorrhoeae NCCP11945] gi|226512044|gb|EEH61389.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae 1291] gi|268623843|gb|EEZ56243.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae SK-92-679] gi|268626145|gb|EEZ58545.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae SK-93-1035] Length = 731 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 22/260 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------SSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 465 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523 Query: 236 GK------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + ++S G S T + L TP + G+I + ++ P Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643 Query: 342 GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+ Sbjct: 644 CASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703 Query: 401 SRFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 704 RGKKTDRRELLIFITPRIID 723 >gi|251790891|ref|YP_003005612.1| general secretion pathway protein D [Dickeya zeae Ech1591] gi|247539512|gb|ACT08133.1| general secretion pathway protein D [Dickeya zeae Ech1591] Length = 696 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 12/248 (4%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG- 242 ++ L++ E QV ++ + EV++ +G S G + Sbjct: 397 IIRQLDVRHE-QVLVEAIVVEVQQAEGLNLGIAWGNRNYGGSNFNSVNVGNGFNQPNPLV 455 Query: 243 ----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + ++ T+ +ALE LA P++ + A F G T Sbjct: 456 NALKGTEGLVAGFYHGNWGTLFNALESNKRNNILATPSVVTLDNHRAEFNVGQDVPILTG 515 Query: 299 SSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYR 352 S +T +V G+ P + G I L I E+S VN+ + Sbjct: 516 SQTTNNDNIFNTVQRRTIGIKFSILPRINQSGTILLNISQEISSLSDTAQVNSNLGSVFN 575 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +R + V++ T+V+ GLL D+ ++ +PLL IP LG LFR + N ++ + + Sbjct: 576 IRTVNNVVQVQDDETVVIGGLLDDEKKETTNKVPLLGDIPWLGNLFRYTSQNNDKRNLML 635 Query: 413 AATPFLVK 420 P +++ Sbjct: 636 FIRPRIIR 643 >gi|53723933|ref|YP_104304.1| general secretion pathway protein D [Burkholderia mallei ATCC 23344] gi|121600876|ref|YP_994796.1| general secretion pathway protein D [Burkholderia mallei SAVP1] gi|124384347|ref|YP_001027865.1| general secretion pathway protein D [Burkholderia mallei NCTC 10229] gi|126450814|ref|YP_001082187.1| general secretion pathway protein D [Burkholderia mallei NCTC 10247] gi|238562298|ref|ZP_00440689.2| general secretion pathway protein D [Burkholderia mallei GB8 horse 4] gi|52427356|gb|AAU47949.1| general secretion pathway protein D [Burkholderia mallei ATCC 23344] gi|121229686|gb|ABM52204.1| general secretion pathway protein D [Burkholderia mallei SAVP1] gi|124292367|gb|ABN01636.1| general secretion pathway protein D [Burkholderia mallei NCTC 10229] gi|126243684|gb|ABO06777.1| general secretion pathway protein D [Burkholderia mallei NCTC 10247] gi|238522939|gb|EEP86381.1| general secretion pathway protein D [Burkholderia mallei GB8 horse 4] Length = 757 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 52/312 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230 + V++ L+ QV ++ + E++ +G Q + + +G S Sbjct: 394 RAVIDQLDSR-RAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 452 Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277 G + GG G + +L ++ L+ P L Sbjct: 453 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 512 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329 + + A G T S S + T D G+ LH P + G + Sbjct: 513 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 572 Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L++ TE S V G N P++ R +TV +G IVL GL++D+ Q + Sbjct: 573 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 632 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 PLL IP +G LFR+ R++T + + P ++ + A+A Sbjct: 633 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 677 Query: 446 NRVNKIYGPKEA 457 NR + I G A Sbjct: 678 NRYDYIQGVTGA 689 >gi|255021644|ref|ZP_05293686.1| Type IV pilus biogenesis protein PilQ [Acidithiobacillus caldus ATCC 51756] gi|254968904|gb|EET26424.1| Type IV pilus biogenesis protein PilQ [Acidithiobacillus caldus ATCC 51756] Length = 772 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 114/301 (37%), Gaps = 51/301 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---F 238 KK++ ++ QV ++ I +V + + +G Q T +S+G G Sbjct: 471 KKLIAKIDRPVP-QVLIEARIVQVTTNAAQSLGIQWGGTYTSNGGGGVINLSGTGASQYT 529 Query: 239 VSEGGD----------------------------------------------FSVKGVLD 252 S+GG F++ Sbjct: 530 SSQGGSYPIGATSGASGGTSTGSGIGVPAVVNLPAYAPAGSALTGLNPASLGFALGTAAG 589 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 L AL+ + + ++ P + + A G + Y+ +SS GATSV+ Sbjct: 590 NRILNLQLQALQASNQAKIISSPKVLTQDNEKAVIEQGQEIPYQQATSS-GATSVSFKKA 648 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 + L TP + G++ L + + ++P ++ T + + +G T+V+ G Sbjct: 649 ELSLDVTPHIAPNGKVTLDVDAKNNQPNYAQTTPSGVPINTQEVKTKLLVNNGQTVVIGG 708 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 + D G+P+L IP+LG LF++ +N ++E+ + TP +V + DL+ D Sbjct: 709 IYTDSKSHYDTGVPVLKDIPLLGWLFKSKTYNDSQSELLVFLTPKVVGGQSEDDLAGEDS 768 Query: 433 H 433 Sbjct: 769 G 769 >gi|186477814|ref|YP_001859284.1| general secretion pathway protein D [Burkholderia phymatum STM815] gi|184194273|gb|ACC72238.1| general secretion pathway protein D [Burkholderia phymatum STM815] Length = 787 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 70/309 (22%), Positives = 113/309 (36%), Gaps = 49/309 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+I QV ++ I E+ + +G Q I + + A G ++ Sbjct: 404 RTVIDQLDIRRP-QVYIEALIVELNSNTNANLGIQWQIGSGNVFAGTNLATGSGNSIINL 462 Query: 242 GGDFS---------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + V + +L AL + L+ P L + Sbjct: 463 TAAAATGGIASALATQNLQQGLNVGWVHNLFGVNGLGALLQALSQTADANVLSTPNLITL 522 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIGLRI 332 Q A G +T S S +S T D G+ LH P + G + L++ Sbjct: 523 DNQEAKIVVGTNVPIQTGSYSNLTSSTATTAFNTFDRIDVGLTLHIKPQITDGGILKLQL 582 Query: 333 QTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 TE S V G P + R +TV +G IVL GL++D+ Q +PLL Sbjct: 583 YTEDSAIVAGTTNVTTNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQVTNSKVPLL 642 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP +G LFR+ R +T + + P ++ + A+A NR Sbjct: 643 GDIPWIGQLFRSENKTRAKTNLLVFLRPVII---------------ADRATAQAVTANRY 687 Query: 449 NKIYGPKEA 457 + I G A Sbjct: 688 DYIQGVTGA 696 >gi|258620393|ref|ZP_05715431.1| general secretion pathway protein D [Vibrio mimicus VM573] gi|258624627|ref|ZP_05719563.1| general secretion pathway protein D [Vibrio mimicus VM603] gi|258583091|gb|EEW07904.1| general secretion pathway protein D [Vibrio mimicus VM603] gi|258587272|gb|EEW11983.1| general secretion pathway protein D [Vibrio mimicus VM573] Length = 675 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 68/375 (18%), Positives = 134/375 (35%), Gaps = 72/375 (19%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181 + L+R I ++ + + V++ +D ++ +SE ++ G Q S Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQQTTSKR 304 Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216 +VM N L + QV ++ I E+ +G Q Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364 Query: 217 HS-------ITGSSSGPS---------------------------------KSFAADFGG 236 I ++G S + D+ Sbjct: 365 WGSLESGSVIQYGNTGASIGNVLIGIEEAKDTTEKRPIRDSNTGAIKYYEETTTKGDYST 424 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G + + +++A+ + L+ P++T + ASF G + Sbjct: 425 LASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGEASFIVGEEVPVI 484 Query: 297 TVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 T S++ +V + G+ L P + + L I+ EVS V+G N + Sbjct: 485 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRF 543 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR++ E+ + Sbjct: 544 AKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLM 603 Query: 412 IAATPFLVKPVAMRD 426 + P +++ D Sbjct: 604 VFIKPTIIRDGVTAD 618 >gi|240114943|ref|ZP_04729005.1| PilQ [Neisseria gonorrhoeae PID18] gi|240122781|ref|ZP_04735737.1| PilQ [Neisseria gonorrhoeae PID332] gi|260441241|ref|ZP_05795057.1| PilQ [Neisseria gonorrhoeae DGI2] gi|268600608|ref|ZP_06134775.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID18] gi|268681392|ref|ZP_06148254.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID332] gi|291044580|ref|ZP_06570289.1| type IV pilus assembly protein PilQ [Neisseria gonorrhoeae DGI2] gi|268584739|gb|EEZ49415.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID18] gi|268621676|gb|EEZ54076.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID332] gi|291011474|gb|EFE03470.1| type IV pilus assembly protein PilQ [Neisseria gonorrhoeae DGI2] Length = 731 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 22/260 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------SSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 465 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 523 Query: 236 GK------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + ++S G S T + L TP + G+I + ++ P Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643 Query: 342 GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+ Sbjct: 644 CASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703 Query: 401 SRFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 704 RGKKTDRRELLIFITPRIID 723 >gi|145298152|ref|YP_001140993.1| type IV pilus biogenesis protein TapQ [Aeromonas salmonicida subsp. salmonicida A449] gi|142850924|gb|ABO89245.1| type IV pilus biogenesis protein TapQ [Aeromonas salmonicida subsp. salmonicida A449] Length = 693 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 109/270 (40%), Gaps = 31/270 (11%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------ 232 S+ K ++++L+I QV ++ + + + +G + +T + + + + Sbjct: 422 SNIKPMLDILDIP-VKQVVIEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGSIEGNDG 480 Query: 233 ---------------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 + + F V + D + L ALE+ + Sbjct: 481 SGNNNGGSAITRPGVEDRMNVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEI 540 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 +A P +T + + A G + Y SSS+GATSVT + L TP + R+ L Sbjct: 541 IASPRVTTANQKPALIEQGTEIPYVE-SSSSGATSVTFKKAVLSLKVTPQITPDNRVILD 599 Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + + GD S + T V + +G T+VL G+ + I+ +PLL Sbjct: 600 LTVTQDTKGETVPTGTGDAVSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLG 659 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG LFR + ++ E+ I TP +V Sbjct: 660 DIPGLGVLFRKTTSENKKRELLIFVTPKIV 689 >gi|59800555|ref|YP_207267.1| hypothetical protein NGO0094 [Neisseria gonorrhoeae FA 1090] gi|240117229|ref|ZP_04731291.1| hypothetical protein NgonPID_02009 [Neisseria gonorrhoeae PID1] gi|268602920|ref|ZP_06137087.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID1] gi|293397705|ref|ZP_06641911.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae F62] gi|62900657|sp|Q5FAD2|PILQ_NEIG1 RecName: Full=Type IV pilus biogenesis and competence protein pilQ; AltName: Full=Outer membrane protein omc; Flags: Precursor gi|59717450|gb|AAW88855.1| pilus secretion protein [Neisseria gonorrhoeae FA 1090] gi|268587051|gb|EEZ51727.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae PID1] gi|291611651|gb|EFF40720.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae F62] Length = 723 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 22/260 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------SSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 457 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 515 Query: 236 GK------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 516 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 575 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + ++S G S T + L TP + G+I + ++ P Sbjct: 576 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 635 Query: 342 GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+ Sbjct: 636 CASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 695 Query: 401 SRFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 696 RGKKTDRRELLIFITPRIID 715 >gi|296390960|ref|ZP_06880435.1| general secretion pathway protein D [Pseudomonas aeruginosa PAb1] Length = 786 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 29/328 (8%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++LL+ QV ++ I EV D + G Q Sbjct: 432 QADATTNTLLISAPEPLYRN--LREVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQ 488 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G G + G+ + + Sbjct: 489 AGNLGGNGVFGGVNFGQSALNTAGKNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLAR 548 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313 AL+ L+ P L + +SAS G + + +S+ ++ D G Sbjct: 549 ALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVG 608 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L + EVS + R DT++ L G +VL GL Sbjct: 609 LKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGL 668 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L+D++Q +G+P LS +P +G+LFR + +R +T + + P++V+ A S + Sbjct: 669 LQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMVFLRPYIVRDAAAG-RSITLNR 727 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVE 461 Y A+ R + G +A + Sbjct: 728 YDFIRRAQQRVQPRHDWSVGDMQAPVLP 755 >gi|186897240|ref|YP_001874352.1| putative outer membrane porin HofQ [Yersinia pseudotuberculosis PB1/+] gi|186700266|gb|ACC90895.1| type IV pilus secretin PilQ [Yersinia pseudotuberculosis PB1/+] Length = 500 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + + L+++G + + G+++ F + + F V + Sbjct: 269 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 328 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + E+ + +A P L Q+AS G Y A ++ Sbjct: 329 GGRLLELELSAL-EQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 387 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P I + G+ M ++ T V + G TI Sbjct: 388 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 447 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + +Q +PLL+ IP+LGA+FR + E+ I TP L+ Sbjct: 448 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLI 498 >gi|330875847|gb|EGH09996.1| general secretion pathway protein D [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 775 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 65/308 (21%), Positives = 117/308 (37%), Gaps = 21/308 (6%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206 G + + + ++ S + + K++ + + QV ++ I EV Sbjct: 455 GSNASSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 514 Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258 +G Q + +SG + + G + G ++ F + + Sbjct: 515 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 574 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312 L ALE + L+ P+L ++ Q A G S++T +SV Sbjct: 575 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 634 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIV 369 GV+L P + G + + IQ +VS N P R T V SG T++ Sbjct: 635 GVILDVVPRINPGGLVYMDIQQQVSNADTNTNNNDANGNPRISSRSVSTQVAAQSGQTVL 694 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + + Sbjct: 695 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTTKSKGRTELIVLITPRVI--TSSSQARQ 752 Query: 430 PDDHYSVE 437 D Y + Sbjct: 753 VTDDYRQQ 760 >gi|254357385|ref|ZP_04973659.1| general secretion pathway protein D [Burkholderia mallei 2002721280] gi|148026449|gb|EDK84534.1| general secretion pathway protein D [Burkholderia mallei 2002721280] Length = 750 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 52/312 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSF 230 + V++ L+ QV ++ + E++ +G Q + + +G S Sbjct: 387 RAVIDQLDSR-RAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTGLGNSI 445 Query: 231 AADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277 G + GG G + +L ++ L+ P L Sbjct: 446 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 505 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329 + + A G T S S + T D G+ LH P + G + Sbjct: 506 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 565 Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L++ TE S V G N P++ R +TV +G IVL GL++D+ Q + Sbjct: 566 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 625 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 PLL IP +G LFR+ R++T + + P ++ + A+A Sbjct: 626 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 670 Query: 446 NRVNKIYGPKEA 457 NR + I G A Sbjct: 671 NRYDYIQGVTGA 682 >gi|117620160|ref|YP_855102.1| general secretion pathway protein D [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561567|gb|ABK38515.1| general secretion pathway protein D [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 677 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 106/267 (39%), Gaps = 25/267 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 ++V+ L+I QV ++ I E+ +G Q + T G ++ Sbjct: 341 EQVVAKLDIR-RAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTDTNLPIGSVAIAA 399 Query: 241 -----EGGDFSVKGVLDRFS----------FETVLHALERATAIRTLAEPTLTAISGQSA 285 G + + F+ + ++ AL T L+ P++ + + A Sbjct: 400 KDYQKNGTTTGLAALAKDFNGMAAGFYKGNWAALVTALSTNTKNDILSTPSIVTMDNKEA 459 Query: 286 SFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 SF G + ++ S S+ ++ G L TP + + L I+ EVS Sbjct: 460 SFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLNIEQEVSSVA 519 Query: 341 IGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G P++ R V + SG T+VL GL+ + Q+ +PLL IP+LG L Sbjct: 520 QTQAPGTSTLGPTFDTRTIKNAVLVKSGETVVLGGLMDEKTQEKVSKVPLLGDIPVLGYL 579 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAM 424 FR++ + + + + P +++ + Sbjct: 580 FRSTSNSTSKRNLMVFIRPTILRDADV 606 >gi|304311962|ref|YP_003811560.1| Fimbrial type-IV assembly protein, outer membran secretin [gamma proteobacterium HdN1] gi|301797695|emb|CBL45917.1| Fimbrial type-IV assembly protein, outer membran secretin [gamma proteobacterium HdN1] Length = 710 Score = 186 bits (472), Expect = 8e-45, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 116/275 (42%), Gaps = 32/275 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------------- 219 + +++ L++ QV ++ I R ++ +++G + ++ Sbjct: 438 RYMLDQLDVP-VRQVLIEARIVIARANVGEEMGVRWNVVQRGKVGEDFHNVFLSGKGTGV 496 Query: 220 -----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRT 271 + +++G F +GGD S + D+ + L ALE Sbjct: 497 ESNVESLTNTGKFTIGTNTVPLDFSVQGGDASSLALGLFDDKGLLDIELSALESEGRADV 556 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 ++ P + Q A SG + Y+ SSS GAT+ + + + L TP + GRI + Sbjct: 557 VSTPKVLTADQQKAKVASGTEIPYQEASSS-GATTTSFKEAVLSLEATPQITPDGRIIMD 615 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ A ++P +T+V + +G T+VL G+ + + + P L + Sbjct: 616 LKVNQDSIGDIDTASNIPIIDTNSVETSVIVDNGQTVVLGGVFRSEEIKSVAKTPFLGDL 675 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+LG LFR + ++ +TE+ + TP +V V + Sbjct: 676 PVLGRLFRKNVSSQAKTELLVFITPKIVTDVVAKQ 710 >gi|292900933|ref|YP_003540302.1| protein transport protein [Erwinia amylovora ATCC 49946] gi|291200781|emb|CBJ47915.1| protein transport protein [Erwinia amylovora ATCC 49946] Length = 406 Score = 186 bits (472), Expect = 8e-45, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 135/314 (42%), Gaps = 31/314 (9%) Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI--QDSQRAVELSETFLSQSGR 173 + D A + +L+ R+ ++ L ++ +D+++A+ +E ++ Q Sbjct: 115 VHADAASVNTSLQS----ERARLMSARGSITLDSRTNSLLLRDTEKALAQTEHWVRQ--- 167 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKS 229 L++ E Q+ L I + + L+++G ++G + + + Sbjct: 168 --------------LDVPLE-QIELAAQIVTMSEESLRELGVTWGMSGEAQVADALRTSQ 212 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 D + ++ LD E L ALE +A P L Q+AS Sbjct: 213 LRVDLASGRPAGVAGLTLA-KLDGRLLELELSALESEHQADIIASPRLFTSHQQTASIKQ 271 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347 G + Y+ + ++G+T++ + + + TP V S GRI L++ + P + +G+ Sbjct: 272 GTEIPYEVSTGNSGSTTMEFKEAMLAMEVTPLVQSNGRILLKLHISQNVPGRNMRSGENE 331 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ DT V L G T+ L G+ + +P L IP+LG+LFR+ ++ Sbjct: 332 VLTIDKQEIDTQVMLKDGQTLALGGIFQQQSATGSTRVPWLGDIPLLGSLFRHDVRQQKR 391 Query: 408 TEIFIAATPFLVKP 421 E+ I TP LV+ Sbjct: 392 RELVIFITPRLVRD 405 >gi|117922096|ref|YP_871288.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. ANA-3] gi|117614428|gb|ABK49882.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. ANA-3] Length = 561 Score = 186 bits (472), Expect = 8e-45, Method: Composition-based stats. Identities = 70/303 (23%), Positives = 121/303 (39%), Gaps = 23/303 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L ++ ++ V + L + +N + QV L+ I EV Sbjct: 242 LSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEVT 301 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHA 262 Q G Q G + G +S+ S+ GV + F T++ Sbjct: 302 LSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMISL 361 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312 L+ + L+ P +TA + Q A G + T SST G T VTT Sbjct: 362 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 421 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELP 363 G+ L TP + G + L + V + + + ++P +R++DT + Sbjct: 422 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRAA 481 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SG +V+ GL+K + ++ +PLL IP++G LF+N +++TE+ I P +V Sbjct: 482 SGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVVGGDT 541 Query: 424 MRD 426 R+ Sbjct: 542 WRN 544 >gi|218782642|ref|YP_002433960.1| type II and III secretion system protein [Desulfatibacillum alkenivorans AK-01] gi|218764026|gb|ACL06492.1| Type II and III secretion system protein [Desulfatibacillum alkenivorans AK-01] Length = 566 Score = 186 bits (472), Expect = 8e-45, Method: Composition-based stats. Identities = 68/277 (24%), Positives = 116/277 (41%), Gaps = 43/277 (15%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------------GSSSGP 226 ++N L+ QV +K I E RD + +G Q G +SG Sbjct: 268 LINKLD-RPPYQVHIKANIVETTRDTARDLGVQWGWMYGRYDSLGNDTDFWLTPGGNSGS 326 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSF------------------------ETVLHA 262 + S A G + + G V G + +F E L A Sbjct: 327 AASRDAPLTGGYTAGTGSKGVSGQGNGINFPVDFEDAMGATMGLMFGKVGSNILEVQLSA 386 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 L A I L+ P++T + Q+AS +G + Y T+ + G V D ++L TP V Sbjct: 387 LADAGKINILSTPSITTLDNQTASTENGTEVPYVTI-NEDGDREVKFKDATLMLEITPHV 445 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + G++ +++ + E + N P ++ +T++ + +G T+V++GL K + Sbjct: 446 IDEGQMKMKVSIKKDEVDLSRNVDGNPFILKKRTETSLIVRNGETVVISGLSKTRNTEGD 505 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GIP L IP LG LF++ + E+ I TP ++ Sbjct: 506 TGIPWLKDIPGLGYLFKSESKSEAMEEVLIFLTPTVL 542 >gi|171059772|ref|YP_001792121.1| pilus (MSHA type) biogenesis protein MshL [Leptothrix cholodnii SP-6] gi|170777217|gb|ACB35356.1| pilus (MSHA type) biogenesis protein MshL [Leptothrix cholodnii SP-6] Length = 577 Score = 186 bits (472), Expect = 8e-45, Method: Composition-based stats. Identities = 64/320 (20%), Positives = 125/320 (39%), Gaps = 47/320 (14%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-------------KSFAADF 234 + ++ E QV L+ I EV Q G S G + G + S A Sbjct: 245 VQVSIERQVMLEAKILEVELGSEAQSGINWSAFGRALGGALSIGLVQPGVTLAGSGALTL 304 Query: 235 GGKFVSEGGDFSVKGVLDRF--------SFETVLHALERATAIRTLAEPTLTAISGQSAS 286 GG ++ GG+ + F +F +L LE ++ L+ P + ++ Q A Sbjct: 305 GGTSITPGGNLAASSSGAPFYGLAFQSANFAALLSFLESQGKVQVLSSPRIATLNNQKAV 364 Query: 287 FTSGGQHLYKTV-----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 G LY T S+ST + + G+ L TP + G++ L + Sbjct: 365 LKVGSDELYVTGVSSTTTATGSTSTSTPSVVLQPFFSGIALDVTPQIDDQGQVMLHVHPA 424 Query: 336 VSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +S +G + S V + D+ V + G + + GL+ + ++ + + Sbjct: 425 ISTVSEKQKNINLGSLGSYQLPLASSTVNETDSIVRVRDGQIVAIGGLMSQEQREERSAV 484 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD-DHYSVEDDAKAFF 444 P L +P++G LFR + + E+ I P +++ D P+ D + + + Sbjct: 485 PGLGDVPLVGGLFRQTSTVMRKRELVILIKPTVIRA----DGPWPEADTHQPASQLQPWR 540 Query: 445 FNRVNKIYGPKEASEVEGQN 464 + ++++ P+ A++ Sbjct: 541 PDAMSQLQLPQAATDSPSDA 560 >gi|56461571|ref|YP_156852.1| Type II secretory pathway, component PulJ [Idiomarina loihiensis L2TR] gi|56180581|gb|AAV83303.1| Type II secretory pathway, component PulJ [Idiomarina loihiensis L2TR] Length = 427 Score = 186 bits (472), Expect = 8e-45, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 104/250 (41%), Gaps = 11/250 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFA 231 ++ ++++N L++ QV ++ + V+ ++ K++G + ++ + K Sbjct: 177 ATIRQLVNDLDVP-VKQVLIEARMVTVKANVSKELGIRWGVSEYGLAIPEDAGSFVKGMQ 235 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D + ++ + D + L ALE+ + P + + Q A G Sbjct: 236 VDLPTAAPAGTFSANLARLSDDILLDLELTALEQENKAEIITSPKIFTSNQQPAYIEQGT 295 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS- 350 + Y ++ GAT+V + L TP + + + + + V P+ Sbjct: 296 EIPYVETAAH-GATAVQFKKAVMGLSVTPQITPNNHVLMELTITQNTRGDTVATPTGPAV 354 Query: 351 -YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ T V +G TIVL G+ ++ +P+L +P++G LF + + E+ E Sbjct: 355 AIDTQEMSTRVLAKNGETIVLGGIFQEHNLNDDSRVPILGSLPLIGKLFSHQQQRDEKRE 414 Query: 410 IFIAATPFLV 419 + I TP ++ Sbjct: 415 LMIFVTPTIL 424 >gi|91224969|ref|ZP_01260228.1| general secretion pathway protein D precursor [Vibrio alginolyticus 12G01] gi|91190215|gb|EAS76485.1| general secretion pathway protein D precursor [Vibrio alginolyticus 12G01] Length = 672 Score = 186 bits (472), Expect = 8e-45, Method: Composition-based stats. Identities = 56/290 (19%), Positives = 110/290 (37%), Gaps = 45/290 (15%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSF- 230 + + V++ L+I QV ++ I E+ +G Q G+S P Sbjct: 329 ALQDVISQLDIR-RAQVLIEALIVEMSEGDGINLGVQWGSLETGAVIQYGNSGAPIGQVM 387 Query: 231 -----------------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + D+ + G + + ++ Sbjct: 388 VGLEEAKDQTRTEYYTNSNGERTPYDVTESGDYSTLASALSGVNGAAMSIVMGDWTALIS 447 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVL 316 A+ + L+ P++T + ASF G + T S++ +V + G+ L Sbjct: 448 AVASDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKL 507 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + Sbjct: 508 KVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDE 566 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + +PLL IP+LG LF+++ E+ + + P +++ D Sbjct: 567 RALESESKVPLLGDIPVLGHLFKSTSTQTEKRNLMVFIKPTIIRDGVTAD 616 >gi|307131443|ref|YP_003883459.1| general secretion pathway protein D [Dickeya dadantii 3937] gi|306528972|gb|ADM98902.1| General secretion pathway protein D [Dickeya dadantii 3937] Length = 696 Score = 186 bits (472), Expect = 8e-45, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 16/250 (6%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG- 242 ++ L++ E QV ++ + EV++ +G + G S + G F Sbjct: 396 IIQQLDVRHE-QVLVEAIVVEVQQAEGLNLGIAWG--NKNYGGSNFNGVNVGNGFNQANP 452 Query: 243 ------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G + S+ ++ +ALE LA P++ + A F G Sbjct: 453 LVDALKGTEGLIAGFYHGSWGSLFNALESNKRNNILATPSVVTLDNHRAEFNVGQDVPIL 512 Query: 297 TVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350 T S +T +V G+ P + G I L I E+S VN+ Sbjct: 513 TGSQTTNNDNIFNTVQRRTIGIKFSILPRINQSGTILLNISQEISSLSDTSQVNSNLGSV 572 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + +R + V++ T+V+ GLL D+ ++ +PLL IP LG LFR + N ++ + Sbjct: 573 FNIRTVNNVVQVQDDETVVIGGLLDDEKKETANKVPLLGDIPWLGNLFRYTSQNNDKRNL 632 Query: 411 FIAATPFLVK 420 + P +++ Sbjct: 633 MLFIRPRIIR 642 >gi|322421237|ref|YP_004200460.1| general secretion pathway protein D [Geobacter sp. M18] gi|320127624|gb|ADW15184.1| general secretion pathway protein D [Geobacter sp. M18] Length = 638 Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 14/253 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-------- 234 +V+ L+ QV ++ IAEV + K +G Q + ++S + S F Sbjct: 345 QVIQKLDRR-SRQVYVQAMIAEVSVNKAKDLGVQLGVITAASNGTVSAIGTFDPFGTVAG 403 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 V+ ++ L + + VL AL+ A+ L+ P + + A G Sbjct: 404 LSTTVTAAKALGMEVTLGKVNIPVVLQALQTNGALNVLSTPNIMTSDNKEAEIFVGESVP 463 Query: 295 YKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMP 349 + + ++ T S+ D G++L P + + L I E+S G Sbjct: 464 FVSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYVKLDIYQEISAVKEFGTATESNL 523 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R A T+V + + T+++ GL++D Q + IPLL IP LG LF+ R++ Sbjct: 524 GSTKRSAKTSVVVKNSDTVLIGGLIQDTDQVTESKIPLLGDIPGLGWLFKTRSTKRDKVN 583 Query: 410 IFIAATPFLVKPV 422 + I TP ++K Sbjct: 584 LLIMLTPRIIKDA 596 >gi|209515818|ref|ZP_03264681.1| general secretion pathway protein D [Burkholderia sp. H160] gi|209503845|gb|EEA03838.1| general secretion pathway protein D [Burkholderia sp. H160] Length = 792 Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 71/313 (22%), Positives = 118/313 (37%), Gaps = 53/313 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-- 239 + V++ L+ A QV ++ I E+ + +G Q + + + A G + Sbjct: 399 RAVIDQLD-ARRAQVYIEALIVELNSNTAGNLGIQWQVANGNLFAGTNLATGTGNSIINL 457 Query: 240 --------SEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPT 276 S GG + G + +L AL + L+ P Sbjct: 458 TAAAAADASTGGLATALGASGLQQGLNVGWIHNLFGVQGLGALLQALSQTADANVLSTPN 517 Query: 277 LTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 L + + A G +T S +ST + D G+ LH P + G + Sbjct: 518 LITLDNEEAKIIVGTNVPIQTGSYSNLTSSATSTAFNTFDRVDIGLTLHVKPQITDGGIL 577 Query: 329 GLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L++ TE S V G N P + R +TV +G IVL GL++D+ Q Sbjct: 578 KLQLYTEDSAIVNGTNNSTTNPAGPEFTKRSIQSTVLCDNGEIIVLGGLMQDNYQVSNSK 637 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +PLL IP +G LFR+ + R +T + + P ++ S + +A Sbjct: 638 VPLLGDIPWVGQLFRSEQKTRNKTNLMVFLRPVIL---------------SDRETTQAVS 682 Query: 445 FNRVNKIYGPKEA 457 NR + I G + A Sbjct: 683 ANRYDYIQGVQGA 695 >gi|296105083|ref|YP_003615229.1| outer membrane porin HofQ [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059542|gb|ADF64280.1| outer membrane porin HofQ [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 213 Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 3/197 (1%) Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G + +D + F++ G ++ + L ALE+ + +A P L A Q Sbjct: 15 GQMTTLGSDLSVASATSHVGFNI-GRINGRLLDLELSALEQKQQVDIIASPRLLASHMQP 73 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIG 342 AS G + Y+ S +GATSV + + + TP VL GR+ L++ + P V+ Sbjct: 74 ASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPVVLPGGRVRLKLHISENMPGQVLQ 133 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G+ + ++ +T VE+ SG T+ L G+ + + +P L KIP LG LFR+ Sbjct: 134 QADGETLAIDKQEIETQVEVKSGETLALGGIFSQKNKTGSDSVPGLGKIPWLGQLFRHDG 193 Query: 403 FNREETEIFIAATPFLV 419 + E E+ + TP LV Sbjct: 194 KDNERRELVVFITPRLV 210 >gi|311693369|gb|ADP96242.1| type 4 fimbrial biogenesis protein PilQ [marine bacterium HP15] Length = 688 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 101/260 (38%), Gaps = 31/260 (11%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------- 242 QV+++ I + ++ + +G + F + E Sbjct: 432 RQVSIEARIVRAQTNVAENLGVRWGGAAYDVSGDNVFTVGGSQGSLQEARDAAAGNSNTI 491 Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 F++ D F + L ALE +++P + Q+A Sbjct: 492 SFPGALAVDLGVSGEGTSSFAIGWGSDNFLVDLELSALESDGQAEVVSQPRVVTADRQTA 551 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 S SG + Y+ +SS GAT++ + + L TP + +I + + V++ G Sbjct: 552 SIKSGEEIPYQEATSS-GATNIEFKEAVLSLEVTPQITPDDKIIMDL--VVNQDSRGEVT 608 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +PS T V + +G T+VL G+ + ++ P L IP LG +F+ + Sbjct: 609 AGIPSINTNSVTTQVLVGNGETVVLGGIFQSEVATQTTKTPFLGDIPYLGRIFKRTEHLD 668 Query: 406 EETEIFIAATPFLVKPVAMR 425 E +E+ I TP ++K +R Sbjct: 669 ERSELLIFITPKIIKNDLLR 688 >gi|300702828|ref|YP_003744429.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CFBP2957] gi|299070490|emb|CBJ41785.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CFBP2957] Length = 713 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 98/249 (39%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------------PSKSF 230 QV ++ I E + +G + ++G P+ S Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNSYTNVTSPVTTNGTWTTDPAVSL 520 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV + L TP + G + L + +V++ +G + + Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLDV--DVNKDSVGTQTTNGFA 637 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+ Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 698 LVFLTPRVL 706 >gi|269959419|ref|ZP_06173802.1| general secretion pathway protein D [Vibrio harveyi 1DA3] gi|269835856|gb|EEZ89932.1| general secretion pathway protein D [Vibrio harveyi 1DA3] Length = 675 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 65/370 (17%), Positives = 134/370 (36%), Gaps = 70/370 (18%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNI 190 VL G+ +Q ++A + + + A+ ++ V++ L+I Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSF------------- 230 QV ++ I E+ +G Q I ++G Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGNLETGAVIQYGNTGAQIGNVMVGLEEAKDQTR 399 Query: 231 ------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 + D+ + GG + + ++ A+ + L Sbjct: 400 TEYYTNSDGERTPYDVTESGDYSTLAAALGGVNGAAMSIMMGDWTALITAVSSDSNSNIL 459 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGR 327 + P++T + ASF G + T S++ +V + G+ L P + Sbjct: 460 SSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDS 519 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + + + +PL Sbjct: 520 VQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPL 578 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L IP++G LF+++ E+ + + P +++ D + + F R Sbjct: 579 LGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIRDGMTADGIT----------QRKYNFIR 628 Query: 448 VNKIYGPKEA 457 ++Y +E Sbjct: 629 AEQLYKAQEG 638 >gi|209756638|gb|ACI76631.1| putative transport protein [Escherichia coli] gi|320645172|gb|EFX14188.1| outer membrane porin HofQ [Escherichia coli O157:H- str. 493-89] gi|320650483|gb|EFX18949.1| outer membrane porin HofQ [Escherichia coli O157:H- str. H 2687] Length = 412 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 119/252 (47%), Gaps = 8/252 (3%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKS 229 N+ A S+ ++ + +++ QV L I + L+++G + ++ + G + Sbjct: 160 NKTALSALEQWVAQMDLPVG-QVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT 218 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +D + F++ G ++ L ALE+ + +A P L A Q AS Sbjct: 219 LGSDLSVATATTHVGFNI-GRINGRLLALELSALEQKQQLDIIASPRLLASHLQPASIKQ 277 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347 G + Y+ S +GATSV + + + TPTVL GRI L++ + P V+ G+ Sbjct: 278 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 337 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + ++ +T VE+ SG T+ L G+ + ++ +PLL IP G LFR+ E Sbjct: 338 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 397 Query: 408 TEIFIAATPFLV 419 E+ + TP LV Sbjct: 398 RELVVFITPRLV 409 >gi|290473150|ref|YP_003466011.1| putative transporter [Xenorhabdus bovienii SS-2004] gi|289172444|emb|CBJ79211.1| putative transport protein, possibly in biosynthesis of type IV pilin (fragment) [Xenorhabdus bovienii SS-2004] Length = 361 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 12/235 (5%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + QV + I R+ L ++G + S G+ S + V Sbjct: 129 TPQQQVQITAHIVTSSREALHELGIHWGMAADPLNRSIGLNR---LNLHQSAGNQSHRLV 185 Query: 251 LDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 L+ E L ALE+ + +A P LTA Q AS G Y T Sbjct: 186 LNTARIHASLLEMELSALEQENQLDIIASPRLTASHQQPASIKQGSDIPYLV--QDKDKT 243 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SYRVRKADTTVELP 363 ++ + + + TP +L G+I L ++ + P + ++ G + ++ T V + Sbjct: 244 TIQFKEAVLGMEVTPHILRKGKIRLALKISQNAPGLPISQGGNENLAIDKQEIVTQVTVR 303 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +G T++L G+ + + +P LS +P+LGALF E+ I TP L Sbjct: 304 NGETLILGGIFQQKKGASLQKVPYLSDLPLLGALFNQKGEQHSRRELVIFITPQL 358 >gi|50122032|ref|YP_051199.1| general secretion pathway protein D [Pectobacterium atrosepticum SCRI1043] gi|49612558|emb|CAG76008.1| general secretion pathway protein D [Pectobacterium atrosepticum SCRI1043] Length = 650 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 65/331 (19%), Positives = 125/331 (37%), Gaps = 36/331 (10%) Query: 146 VLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYAN----------SSSKKVMNLLNIAGED 194 VL G+ +IQ D Q A+ +S Q + ++V+ L+I Sbjct: 276 VLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP- 334 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKF 238 QV ++ IAEV+ +G Q + + + G Sbjct: 335 QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAA 394 Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 S G F+ + + ++ ++ AL + LA P++ + A+F G + Sbjct: 395 TSALGSFNGIAAGFYQGNWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLA 454 Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPS 350 +T S +V G+ L P + + L I+ EVS + + Sbjct: 455 GSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLGAT 514 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+V+ GLL + +P L IPILG LFR++ ++ + Sbjct: 515 FNTRTVNNAVLVSSGETVVVGGLLDKSTNESASKVPFLGDIPILGHLFRSNSQETKKRNL 574 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 + P +++ + + ++S ++ + Sbjct: 575 MLFIRPSIIRDRSQYQSASASKYHSFSNEEQ 605 >gi|56476309|ref|YP_157898.1| general (Type II) secretion pathway (GSP) D protein [Aromatoleum aromaticum EbN1] gi|56312352|emb|CAI06997.1| General (Type II) secretion pathway (GSP) D protein [Aromatoleum aromaticum EbN1] Length = 769 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 99/236 (41%), Gaps = 7/236 (2%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFVSEGGDFSVK 248 QV ++ +I EV + G Q G G S F FS Sbjct: 482 SPTQVLIEASILEVTLSDETRFGLQWFFEGKLGGDYRGSGLFTDRASETLGRTVPGFSYS 541 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGA 304 VL+A+ + + + ++ P++ + +A G Q T + Sbjct: 542 ITNAAGQVRAVLNAMAQKSLVNVISSPSVMVLDNHTAVIHVGDQQPIRSTQTVTDGGTTS 601 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 TS+ D GV+L TP+ + G + + I+ V++ +A S+ R+ + V + + Sbjct: 602 TSIQYKDTGVMLQVTPSANAGGMVAMDIKQSVTDVGAVDDATGQRSFNQREVASKVAVRT 661 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T++L GL++D K G+P L IP+LG LF + TE+ + TP +V+ Sbjct: 662 GETVILGGLIRDSDTNGKTGVPWLHDIPVLGPLFGTTSDVTRRTELLVMITPRVVQ 717 >gi|113971816|ref|YP_735609.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-4] gi|113886500|gb|ABI40552.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-4] Length = 561 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 69/296 (23%), Positives = 119/296 (40%), Gaps = 23/296 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L ++ ++ V + L + +N + QV L+ I EV Sbjct: 242 LSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEVT 301 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHA 262 Q G Q G + G +S+ S+ GV + F T++ Sbjct: 302 LSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMISL 361 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312 L+ + L+ P +TA + Q A G + T SST G T VTT Sbjct: 362 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 421 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELP 363 G+ L TP + G + L + V + + + ++P +R++DT + Sbjct: 422 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRAA 481 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +V+ GL+K + ++ +PLL IP++G LF+N +++TE+ I P +V Sbjct: 482 SGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537 >gi|114045976|ref|YP_736526.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-7] gi|113887418|gb|ABI41469.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-7] Length = 561 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 69/296 (23%), Positives = 119/296 (40%), Gaps = 23/296 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L ++ ++ V + L + +N + QV L+ I EV Sbjct: 242 LSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEVT 301 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHA 262 Q G Q G + G +S+ S+ GV + F T++ Sbjct: 302 LSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMISL 361 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312 L+ + L+ P +TA + Q A G + T SST G T VTT Sbjct: 362 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 421 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELP 363 G+ L TP + G + L + V + + + ++P +R++DT + Sbjct: 422 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRAA 481 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +V+ GL+K + ++ +PLL IP++G LF+N +++TE+ I P +V Sbjct: 482 SGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537 >gi|240079992|ref|ZP_04724535.1| PilQ [Neisseria gonorrhoeae FA19] gi|268596134|ref|ZP_06130301.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae FA19] gi|268549922|gb|EEZ44941.1| type IV pilus biogenesis and competence protein pilQ [Neisseria gonorrhoeae FA19] Length = 731 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 106/260 (40%), Gaps = 22/260 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K+++ L++ QV ++ I E + +G + TG +++ A +G Sbjct: 465 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFR 523 Query: 242 GGD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 GGD S+ + + L A E + +TLA P + + + Sbjct: 524 GGDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 583 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + ++S G S T + L TP + G+I + ++ P Sbjct: 584 EAKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 643 Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ +++ +PLL IP++G LF+ Sbjct: 644 CASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKT 703 Query: 401 SRFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 704 RGKKTDRRELLIFITPRIID 723 >gi|254673580|emb|CBA09077.1| fimbrial assembly protein [Neisseria meningitidis alpha275] Length = 687 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 421 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 479 Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 480 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 539 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + S + G +S T + L TP + G+I + ++ P Sbjct: 540 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 599 Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 600 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 659 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 660 RGKKTDRRELLIFITPRIM 678 >gi|298530088|ref|ZP_07017490.1| type II and III secretion system protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509462|gb|EFI33366.1| type II and III secretion system protein [Desulfonatronospira thiodismutans ASO3-1] Length = 504 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 7/245 (2%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFVS 240 K +N L+ Q+ ++ I E + +++G + S + S + D Sbjct: 260 KAINHLDRPRP-QILMEANIVEATQRTARELGVRWSGRYVTPLSFEDEVGFGDLLRDEAG 318 Query: 241 EGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 GD + + R L ALER + L P++T + Q A G + Y+T Sbjct: 319 YTGDMDLSVISARLPGSVLYAHLQALERDGEVNILTSPSITTMDNQMAFTEHGQRVPYET 378 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 V G+ +V D + L P+V+ + + I+ E + P R + + Sbjct: 379 V-DEDGSRTVEFEDAVLRLEVVPSVMEGNHLKMDIRVNKDEVDFTRDVRGQPVIRTKHTE 437 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + + G TIV++GL K+ + + G+ L +P LG LF++ +E E I TP Sbjct: 438 TNLVVRDGETIVISGLSKETLSDTERGVMGLRDLPGLGWLFKSREQEQEMEEFLIFITPT 497 Query: 418 LVKPV 422 +++P Sbjct: 498 ILEPQ 502 >gi|207721850|ref|YP_002252288.1| fimbrial type-4 assembly protein [Ralstonia solanacearum MolK2] gi|206587017|emb|CAQ17601.1| fimbrial type-4 assembly protein [Ralstonia solanacearum MolK2] Length = 713 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 98/249 (39%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------------PSKSF 230 QV ++ I E + +G + ++G P+ S Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNSYTNVTSPITTNGTWTTDPAVSL 520 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV + L TP + G + L + +V++ +G + + Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLDV--DVNKDSVGTQTTNGFA 637 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+ Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 698 LVFLTPRVL 706 >gi|107100151|ref|ZP_01364069.1| hypothetical protein PaerPA_01001172 [Pseudomonas aeruginosa PACS2] Length = 786 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 29/328 (8%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++LL+ QV ++ I EV D + G Q Sbjct: 432 QADATTNTLLISAPEPLYRN--LREVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQ 488 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G G + G+ + + Sbjct: 489 AGNLGGNGVFGGVNFGQSALNTAGKNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLAR 548 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313 AL+ L+ P L + +SAS G + + +S+ ++ D G Sbjct: 549 ALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVG 608 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L + EVS + R DT++ L G +VL GL Sbjct: 609 LKLNIRPQISEGGTVKLDVYQEVSSVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGL 668 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L+D++Q +G+P LS +P +G+LFR + +R +T + + P++V+ A S + Sbjct: 669 LQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMVFLRPYIVRDAAAG-RSITLNR 727 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVE 461 Y A+ R + G +A + Sbjct: 728 YDFIRRAQQRVQPRHDWSVGDMQAPVLP 755 >gi|215919282|ref|NP_820868.2| type II and III secretion system family protein [Coxiella burnetii RSA 493] gi|206584166|gb|AAO91382.2| type 4 pili secretin (outer membrane porin) [Coxiella burnetii RSA 493] Length = 353 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 7/275 (2%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G++ + V ++ ++ + + Y S +++ L+I QV +K I + Sbjct: 63 SGILSKFGYAAADVRTNQLWIREEQTHIYLIQS---LVSQLDIPI-HQVLIKARIISISD 118 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERA 266 L +G +++ + D + G D + + + L ALE+ Sbjct: 119 HNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQFGVADIPIIKFKNGQLLDLTLSALEQE 178 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + L+ P L + Q+A SG Y+ + G TSVT + L TP VL Sbjct: 179 GRAQVLSCPELMTNNRQTAIIESGEAIPYQEKTGQ-GNTSVTFKKATLRLKVTPVVLPGK 237 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 RI L++ + + +P+ + ++ T V + + T+VL G+ + QQ + GIP Sbjct: 238 RILLQLNVNQDK-MSSFLVNGVPTIQTQQLTTKVMVNNQETVVLGGIYEQSTQQEEAGIP 296 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L KIPILG LFR+ + + E ++ I TP ++ P Sbjct: 297 GLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISP 331 >gi|312972414|ref|ZP_07786588.1| general secretion pathway protein D [Escherichia coli 1827-70] gi|310334791|gb|EFQ00996.1| general secretion pathway protein D [Escherichia coli 1827-70] Length = 650 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 118/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 325 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 383 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 384 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 443 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 444 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 503 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ +PL Sbjct: 504 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLP 563 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 564 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 623 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 624 KALVGSEDLPVLDENTFN 641 >gi|254360608|ref|ZP_04976757.1| competence protein E [Mannheimia haemolytica PHL213] gi|153091148|gb|EDN73153.1| competence protein E [Mannheimia haemolytica PHL213] Length = 437 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 112/261 (42%), Gaps = 15/261 (5%) Query: 175 QYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSG------- 225 + + S K + NL+ + Q+ ++ I + + L+++G + I +G Sbjct: 165 KDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGR 224 Query: 226 ----PSKSFAADFGGKFVSEGGDFSVK--GVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + + F GG +V ++ + L ALE+ ++ +A P L Sbjct: 225 LEGNGLNNVTNNLNVNFPITGGASAVLQVSSINSRVLDLELSALEQENSVEIIASPRLLT 284 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + + AS G + Y ++ + AT V + + L P + + +I L + + P Sbjct: 285 TNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLGLEVVPHLSTQNQILLDLIVTQNSP 344 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + + ++ +T V G TIVL G+ + Q+ ++ +P+L IP + LF Sbjct: 345 NSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPILGSIPFIKRLFS 404 Query: 400 NSRFNREETEIFIAATPFLVK 420 +R + E+ I TP++++ Sbjct: 405 QTRDKISKRELVIFVTPYILQ 425 >gi|84390819|ref|ZP_00991511.1| fimbrial assembly protein [Vibrio splendidus 12B01] gi|84376622|gb|EAP93499.1| fimbrial assembly protein [Vibrio splendidus 12B01] Length = 564 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 31/267 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------------- 219 + ++ L+I QV ++ I V L ++G + + Sbjct: 298 RGIIESLDIP-VKQVQIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQIT 356 Query: 220 ----TGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G +S + G + F V + + L AL++ + ++ Sbjct: 357 PYDDNGGNSAIDDFLNVNLGATSPNASSIAFQVAKLGSDTLLDLELSALQQESKAEIISS 416 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L + + A G + Y SSS+GATSV + L TP + R+ L + Sbjct: 417 PRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSV 475 Query: 335 EVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 P V+ G+ + ++ T V + +G T+VL G+ + + + +PLL +P Sbjct: 476 TQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLP 535 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 +LGALFR S N ++E+ I TP +V Sbjct: 536 VLGALFRRSYENVGKSELLIFVTPKVV 562 >gi|126441466|ref|YP_001057062.1| general secretion pathway protein D [Burkholderia pseudomallei 668] gi|126220959|gb|ABN84465.1| general secretion pathway protein D [Burkholderia pseudomallei 668] Length = 757 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 113/312 (36%), Gaps = 52/312 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-------- 233 + V++ L+ A QV ++ + E++ +G Q + ++ + Sbjct: 394 RAVIDQLD-ARRAQVYIEALVVELQATTSANLGIQWQVANNALYAGTNLVTGQTNLGNSI 452 Query: 234 ---FGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTL 277 G + GG G + +L ++ L+ P L Sbjct: 453 VNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDANVLSTPNL 512 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329 + + A G T S S + T D G+ LH P + G + Sbjct: 513 VTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILK 572 Query: 330 LRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 L++ TE S V G N P++ R +TV +G IVL GL++D+ Q + Sbjct: 573 LQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKV 632 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445 PLL IP +G LFR+ R++T + + P ++ + A+A Sbjct: 633 PLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTS 677 Query: 446 NRVNKIYGPKEA 457 NR + I G A Sbjct: 678 NRYDYIQGVTGA 689 >gi|291285874|ref|YP_003502691.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615] gi|290765747|gb|ADD59707.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615] Length = 656 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 64/335 (19%), Positives = 121/335 (36%), Gaps = 43/335 (12%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192 VL G+ I++ + +E + +++ + V++ L+I Sbjct: 285 VLTGISSNIENDAKKSSSTEALRKGVTIKSHEQTNALILTGAPDVIRDLENVISQLDIRR 344 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------ 246 QV ++ IAEV+ +G Q S S + D S Sbjct: 345 P-QVLVEAIIAEVQDADGLNLGIQWVNKHSGVTQFTSTGLPITTMVQTRQSDISDSDQSN 403 Query: 247 ----VKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---- 295 G+ F ++ +L AL ++ LA P++ + A+F G + Sbjct: 404 TLSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGS 463 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYR 352 +T S +V G+ L P + + L I+ EVS + ++ Sbjct: 464 QTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFN 523 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + + +G T+V+ GLL I+ + +PLL IP+LG LF + + + + + Sbjct: 524 TRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFSSKSEHAAKRNLML 583 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 P +++ D + K FN+ Sbjct: 584 FIRPTIIR---------ERDGFRHASAEKYLSFNQ 609 >gi|206561863|ref|YP_002232628.1| type II secretion system protein D [Burkholderia cenocepacia J2315] gi|198037905|emb|CAR53850.1| type II secretion system protein D [Burkholderia cenocepacia J2315] Length = 777 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 71/345 (20%), Positives = 122/345 (35%), Gaps = 53/345 (15%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G +A + + + + Y N + V++ L+ A QV ++ I E+ Sbjct: 366 SGDDNQPGGMIQADSATNSLIITASDPVYRN--LRSVIDQLD-ARRAQVYIEALIVELNS 422 Query: 208 DILKQIGFQH-----------------------SITGSSSGPSKSFAADFGGKFVSEGGD 244 Q+G Q SI ++G + S A Sbjct: 423 TTQGQLGIQWQVASGQFLGGTNLAAAAGNVAGNSIINLTTGTAGSTGAGLAANLSGLNQG 482 Query: 245 FSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 ++ + + F +L + L+ P L + + A G T S S Sbjct: 483 LNIGWLHNMFGVQGLGALLQYFSGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYS 542 Query: 302 TGATSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYR 352 + T D G+ LH P + G + L++ TE S V G + P++ Sbjct: 543 NLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTSAQTGPTFT 602 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R +T+ +G IVL GL++D+ +PLL IP +G LFR+ R++T + + Sbjct: 603 KRSIQSTILADNGEIIVLGGLMQDNYAVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMV 662 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 P ++ S A+ NR + I G A Sbjct: 663 FLRPVII---------------SDRSTAQEVTANRYDYIQGVTGA 692 >gi|115350108|ref|YP_771947.1| general secretion pathway protein D [Burkholderia ambifaria AMMD] gi|115280096|gb|ABI85613.1| general secretion pathway protein D [Burkholderia ambifaria AMMD] Length = 777 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 110/310 (35%), Gaps = 50/310 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ A QV ++ I E+ +G Q + + A G + Sbjct: 399 RSVIDQLD-ARRAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLAPTAGTGLGNS 457 Query: 242 GGDFSVKGVLDRFSFETVLHALERA-------------------------TAIRTLAEPT 276 + + G L L + + L+ P Sbjct: 458 IVNLTSGGTAATTGLAANLAGLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPN 517 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRI 328 L + + A G T S S + T D G+ LH P + G + Sbjct: 518 LITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGIL 577 Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L++ TE S V G NA P++ R +T+ +G IVL GL++D+ Q +PL Sbjct: 578 KLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPL 637 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L IP +G LFR+ R++T + + P ++ S A+ NR Sbjct: 638 LGDIPWIGQLFRSESKQRQKTNLMVFLRPVII---------------SDRSTAQEVTANR 682 Query: 448 VNKIYGPKEA 457 + I G A Sbjct: 683 YDYIQGVTGA 692 >gi|326796602|ref|YP_004314422.1| general secretion pathway protein D [Marinomonas mediterranea MMB-1] gi|326547366|gb|ADZ92586.1| general secretion pathway protein D [Marinomonas mediterranea MMB-1] Length = 623 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 70/375 (18%), Positives = 143/375 (38%), Gaps = 37/375 (9%) Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 AD + L GK + + LD L+ + AD+ Sbjct: 225 IADERT---NRLVLKGKEA------TLDQIEDLIQQLD-QPSDSTTRLK-VIPLRYADAK 273 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGE 193 E+++ + ++ + + ++ L+ + N + V++ L+I Sbjct: 274 TTAELITGLLSAEKTAQSSDRPESSFVQADESLNALVVSAEPNVMADILGVLSELDIP-R 332 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF----------------GGK 237 QV ++ I EV+ + +GFQ +S + +F G Sbjct: 333 AQVLIEAIIVEVKMEGSDALGFQWLFGDTSDSTTPVLGTNFSSAGSSLTDIATSVVAGTP 392 Query: 238 FVSEGGDFSVKGVLDRFSFET--VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 +S G +L A+E + L+ P + + Q + G + Sbjct: 393 TLSNGITVGAASFNSDGDLNMAGILQAIESNSNSNLLSTPKIMTLDNQKSKILVGETRPF 452 Query: 296 KTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 +T SSS+ + + D G+ L TP + + + + + V ++ + Sbjct: 453 QTGGYSDSSSSAFVTTSREDIGLTLEVTPHINADNEVKMEVNQIVEAASPEASSLGTIT- 511 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ +TTV + TIVL GL++D++ ++++ +PLL IPILGALFR+ + + + Sbjct: 512 TKREIETTVIAGNRKTIVLGGLIEDNVVEVEQKVPLLGDIPILGALFRSKSYENNKKNLL 571 Query: 412 IAATPFLVKPVAMRD 426 + P +++ + Sbjct: 572 VFIRPTILRSAVEAE 586 >gi|189424703|ref|YP_001951880.1| type IV pilus secretin PilQ [Geobacter lovleyi SZ] gi|189420962|gb|ACD95360.1| type IV pilus secretin PilQ [Geobacter lovleyi SZ] Length = 891 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 108/261 (41%), Gaps = 22/261 (8%) Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSF 230 + A +K++ L++ E QV ++ I E + +G I S S Sbjct: 633 KSAVDDMRKILASLDVP-EKQVMIEARIVEASSTFTQSLGVNWGIHYRDGSASIAGINSM 691 Query: 231 AADFGGKFVSEGGDFSVKG------------VLDRFSFETVLHALERATAIRTLAEPTLT 278 +FGG + V G + + L+A A +R ++ P + Sbjct: 692 DTNFGGLASTAPTSSGVSGSPGAAAGISFGTLSSNIKLDLRLNAAVSAGLVRIVSTPRVA 751 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 ++ +SA T G Q Y +S++ + + L TP + G + ++I + Sbjct: 752 TLNHKSAKITQGQQIPY--TASTSDKIETKFVEAALALEVTPHINPNGTVVMKIDAKNDS 809 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P + G+ P+ ++A T + L G T V+ G+ + +G+P L+ +P LG LF Sbjct: 810 PG---STGNPPAINKKQATTEMMLRDGETTVIGGIFVESESNNDDGVPFLADVPWLGGLF 866 Query: 399 RNSRFNREETEIFIAATPFLV 419 +++ R E+ I TP ++ Sbjct: 867 KSNETKRNRNELLIFITPRII 887 >gi|172059128|ref|YP_001806780.1| general secretion pathway protein D [Burkholderia ambifaria MC40-6] gi|171991645|gb|ACB62564.1| general secretion pathway protein D [Burkholderia ambifaria MC40-6] Length = 771 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 110/310 (35%), Gaps = 50/310 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ A QV ++ I E+ +G Q + + A G + Sbjct: 392 RSVIDQLD-ARRAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLAPTAGTGLGNS 450 Query: 242 GGDFSVKGVLDRFSFETVLHALERA-------------------------TAIRTLAEPT 276 + + G L L + + L+ P Sbjct: 451 IVNLTSGGTAATTGLAANLAGLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPN 510 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRI 328 L + + A G T S S + T D G+ LH P + G + Sbjct: 511 LITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGIL 570 Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L++ TE S V G NA P++ R +T+ +G IVL GL++D+ Q +PL Sbjct: 571 KLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPL 630 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L IP +G LFR+ R++T + + P ++ S A+ NR Sbjct: 631 LGDIPWIGQLFRSESKQRQKTNLMVFLRPVII---------------SDRSTAQEVTANR 675 Query: 448 VNKIYGPKEA 457 + I G A Sbjct: 676 YDYIQGVTGA 685 >gi|269103695|ref|ZP_06156392.1| putative type II secretory pathway component EpsD [Photobacterium damselae subsp. damselae CIP 102761] gi|268163593|gb|EEZ42089.1| putative type II secretory pathway component EpsD [Photobacterium damselae subsp. damselae CIP 102761] Length = 579 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 61/323 (18%), Positives = 121/323 (37%), Gaps = 47/323 (14%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEV 205 G ++ S+ V ++ + S +K +++ L+I QV ++ I EV Sbjct: 204 GQAKSASSSKNEVSINADKGTNSLVISAPPDLMRKLKDIISQLDIR-RAQVHIEAMIVEV 262 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------------------ 241 + G Q + G V++ Sbjct: 263 QEGDGLNFGVQWGSEDGGIIQYGNSPVGIGSYMVAKKEAEDQTKVETRYDSDGKPYTYET 322 Query: 242 -------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 GG + + +++A+ L+ P++T + Q A + Sbjct: 323 KESGDYSSLAKLLGGVNGTAVAIAMGDWTALVNAVRTNRNANVLSTPSITVLDNQEAELS 382 Query: 289 SGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G + +T S+S+ T+V D G+ L TP + + L I+ VS+ Sbjct: 383 VGQEVPVQTGSTSSSNNDNPFTTVERKDVGIQLTVTPQINEGDSVKLDIKQVVSQVADAQ 442 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 A D+ + R+ +T V + G I L G++++ + + +P+L IP+LG+LFR++ Sbjct: 443 GAVDI-RFDKRELNTAVLVKDGSMIALGGMMQEKALESESKVPILGDIPVLGSLFRSTNN 501 Query: 404 NREETEIFIAATPFLVKPVAMRD 426 +T + I P +++ D Sbjct: 502 ETVKTNLLIFIKPTIIRDGMTAD 524 >gi|70730124|ref|YP_259863.1| general secretion pathway protein D [Pseudomonas fluorescens Pf-5] gi|68344423|gb|AAY92029.1| general secretion pathway protein D [Pseudomonas fluorescens Pf-5] Length = 794 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 69/291 (23%), Positives = 117/291 (40%), Gaps = 30/291 (10%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++ L+ QV ++ I EV D + G Q Sbjct: 438 QADATTNTLLISAPDPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDASEFGVQWQ 494 Query: 219 I----------------TGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETV 259 +G P+ + D K ++ G G + G+ + + Sbjct: 495 AGNLGGHGGFGGVNLGGSGLVGTPASKTSIDVLPKGLNVGVVNGTVDIPGIGKVLDLKVL 554 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHD 311 AL+ L+ P L + ++AS G + T S TG +V + Sbjct: 555 ARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREE 614 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G+ L+ P + G + L I EVS + R DT++ L G +VL Sbjct: 615 VGLKLNVRPQISEGGTVKLDIYQEVSSVDQRASVDAGTVTNKRAIDTSILLDDGQIMVLG 674 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 GLL+D Q + +P LS IP LG LFRN + + +T + + P++++ Sbjct: 675 GLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYIIRDS 725 >gi|260718933|ref|YP_003225074.1| type II secretion protein EtpD [Escherichia coli O103:H2 str. 12009] gi|257762444|dbj|BAI33940.1| type II secretion protein EtpD [Escherichia coli O103:H2 str. 12009] Length = 656 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 64/335 (19%), Positives = 121/335 (36%), Gaps = 43/335 (12%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192 VL G+ I++ + +E + +++ + V++ L+I Sbjct: 285 VLTGISSNIENDAKKSSSTEALRKGVTIKSHEQTNALILTGAPDVIRDLENVISQLDIRR 344 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------ 246 QV ++ IAEV+ +G Q S S + D S Sbjct: 345 P-QVLVEAIIAEVQDADGLNLGIQWVNKHSGVTQFTSTGLPITTMVQTRQSDISDSDQSN 403 Query: 247 ----VKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---- 295 G+ F ++ +L AL ++ LA P++ + A+F G + Sbjct: 404 TLSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGS 463 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYR 352 +T S +V G+ L P + + L I+ EVS + ++ Sbjct: 464 QTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFN 523 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R + + +G T+V+ GLL I+ + +PLL IP+LG LF + + + + + Sbjct: 524 TRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFSSKSEHAAKRNLML 583 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 P +++ D + K FN+ Sbjct: 584 FIRPTIIR---------ERDGFRHASAEKYLSFNQ 609 >gi|183179752|ref|ZP_02957963.1| fimbrial assembly protein [Vibrio cholerae MZO-3] gi|183013163|gb|EDT88463.1| fimbrial assembly protein [Vibrio cholerae MZO-3] Length = 377 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I V+ L+++G + + ++ S Sbjct: 114 REIIESLDIP-VKQVQIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGL 172 Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + F V + + L AL+ + ++ P L Sbjct: 173 LADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRL 232 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A G + Y SSS+GA++V + L TP + R+ L + Sbjct: 233 ITTNKQPAYIEQGTEIPYLE-SSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQD 291 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LG Sbjct: 292 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 351 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR + ++E+ I TP +V Sbjct: 352 ALFRRTYEQMGKSELLIFVTPKVV 375 >gi|17547690|ref|NP_521092.1| fimbrial type-4 assembly signal peptide protein [Ralstonia solanacearum GMI1000] gi|17429995|emb|CAD16680.1| probable fimbrial type-4 assembly signal peptide protein [Ralstonia solanacearum GMI1000] Length = 714 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-----------------------SF 230 QV ++ I E + +G + ++G S Sbjct: 462 RQVMIEARIVEADDTFSRNLGAKLGFAAKTNGAGYGNTYSNVVSPVTKDATWDNSAAVSL 521 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 522 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 581 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV+ + L TP + G + L + +V++ +G + + Sbjct: 582 TEVPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNVFLDV--DVNKDSLGTQTTNGFA 638 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+ Sbjct: 639 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 698 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 699 LVFLTPRVL 707 >gi|330447077|ref|ZP_08310727.1| type IV pilus secretin PilQ family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491268|dbj|GAA05224.1| type IV pilus secretin PilQ family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 569 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 107/264 (40%), Gaps = 25/264 (9%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------GSSSGPSKS 229 SS K ++ L+I QV ++ I + + ++G + ++ GS G S Sbjct: 306 SSIKNIVESLDIP-VKQVQIEARIVTINEGDIDELGVRWGVSKVDGDTTIGGSIEGNLAS 364 Query: 230 FAADFGGKFVSEGGDFSVK------------GVLDRFSFETVLHALERATAIRTLAEPTL 277 V + + ++ L + L AL+ ++ P L Sbjct: 365 SGLLDDDATVDDFLNVNLGASAGAASIAFQVAKLGNILLDLELSALQTENKAEIISSPRL 424 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + ++A G + Y SSS GATSV+ + L TP + ++ L ++ Sbjct: 425 MTTNKKTAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVTPQITPDDKLVLDLEVTQD 483 Query: 338 EP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G S ++ T V + +G T+VL G+ + + + +P+L IP+LG Sbjct: 484 NKGEDVPTGEGTAVSIDTQRIGTQVLVNNGETVVLGGIYQHSMTNVTRKVPVLGDIPVLG 543 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR+ + E+ I TP +V Sbjct: 544 ALFRHKMEQMGKRELLIFVTPKIV 567 >gi|288942750|ref|YP_003444990.1| type IV pilus secretin PilQ [Allochromatium vinosum DSM 180] gi|288898122|gb|ADC63958.1| type IV pilus secretin PilQ [Allochromatium vinosum DSM 180] Length = 787 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 108/291 (37%), Gaps = 49/291 (16%) Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------ 224 A ++V+NLL++A QV ++ + + +G + ++GS Sbjct: 493 ALEEVRRVVNLLDVA-VRQVMIESRVVIANNSFARDLGVRFGVSGSMGKVGDNEVLIGGG 551 Query: 225 ---------------GPSKSFAADFGGKFVSEGGDFSVK--------------------G 249 G + S + + G+ ++ G Sbjct: 552 QNGYLAVGDYDSGPFGLNASTGTPYNSTLTDDAGNATLITNLPATTIQDAASGSIDFLIG 611 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + + + L A++R ++ P + A+ G + Y+ S G TS+ Sbjct: 612 KVGSYLIQLELSAMQREGRGEIISSPRVITADKNKATIKVGSEIPYQEQSGQ-GNTSIAF 670 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + + L TP + RI + ++ P + + P R T V + +G T+V Sbjct: 671 KEAVLQLDVTPQITPDDRIIMDLEVRKDRPDWSRSINNTPPIDTRSVKTNVVIDNGETVV 730 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G+ + + KE +P L +P+LG LF+ TE+ I TP ++K Sbjct: 731 LGGVFEREKTFSKEQVPWLGDVPVLGRLFKQEARQDSNTELLIFVTPKILK 781 >gi|241767965|ref|ZP_04765503.1| type II and III secretion system protein [Acidovorax delafieldii 2AN] gi|241360839|gb|EER57693.1| type II and III secretion system protein [Acidovorax delafieldii 2AN] Length = 381 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 61/281 (21%), Positives = 108/281 (38%), Gaps = 37/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ QV ++ I EV + L + G Q S G A Sbjct: 78 RAVIDKLD-GRRAQVLVESLIVEVSTNKLAEFGIQWQSVLGSKGDGMVGAIGTNSGLAGA 136 Query: 242 GGDFSVKGVL--------------------------DRFSFETVLHALERATAIRTLAEP 275 G+ ++ + + L+ + L+ P Sbjct: 137 NIIGLAAGIAQGGTAAATAAGKLGGGLNVALAPRVNGQYYLGALANFLQNSGDANVLSTP 196 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPG 326 L + + A G + T S + T+V D G++L P + G Sbjct: 197 NLMTLDNEEAKIIIGSNVPFVTGSYANTGGNSGAVNPFTTVERKDVGLMLKVRPQINENG 256 Query: 327 RIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L I EVS+ V+ + P+ R ++ V + G IV+ GLL+D Q ++ + Sbjct: 257 TVKLAIYQEVSKIDEATVSNANGPTTSKRSIESNVLVEDGNIIVIGGLLEDSYSQGEDKV 316 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 PL+ IP+LG LFR+ +R++T + + P +V+ A D Sbjct: 317 PLMGDIPLLGNLFRSENRSRKKTNLMVFLRPVVVRDAAASD 357 >gi|238025716|ref|YP_002909947.1| general secretory pathway protein D [Burkholderia glumae BGR1] gi|237874910|gb|ACR27243.1| General secretory pathway protein D [Burkholderia glumae BGR1] Length = 765 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 115/315 (36%), Gaps = 55/315 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ QV ++ I E+ + +G Q + ++ S + G + Sbjct: 384 RAVVDQLDER-RAQVYIEALIVELNSNTSANLGIQWQVANNALYAGSSLGTNVSGLGNTI 442 Query: 242 GGDFS----------------------------VKGVLDRFSFETVLHALERATAIRTLA 273 G + +K + +L A ++ L+ Sbjct: 443 TGLTAAAAAGSAGGANGGAAAAASLTPGLNIGWLKNMFGITGLGALLQAFSGSSDANVLS 502 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSP 325 P L + + A G T S SS + D G+ LH P + Sbjct: 503 TPNLVTLDNEEAKIVVGQNVPIATGSYSNLTSGNSSNAFNTFDRQDVGLTLHVKPQITEG 562 Query: 326 GRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G + L+I TE S V + +P++ R +TV +G IVL GL++D+ Q Sbjct: 563 GILKLQIYTEDSAVVPSTTSSTAVGVPTFSKRSIQSTVLCDNGEIIVLGGLMQDNYQVGN 622 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +PLL IP +G LFR+ R++T + + P ++ A +A Sbjct: 623 NKVPLLGDIPWIGQLFRSEGKQRQKTNLMVFLRPVILTDHA---------------TTQA 667 Query: 443 FFFNRVNKIYGPKEA 457 NR + I G + A Sbjct: 668 ITANRYDYIQGVQGA 682 >gi|148976513|ref|ZP_01813209.1| Type II secretory pathway, component EpsD [Vibrionales bacterium SWAT-3] gi|145964089|gb|EDK29346.1| Type II secretory pathway, component EpsD [Vibrionales bacterium SWAT-3] Length = 674 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 56/292 (19%), Positives = 112/292 (38%), Gaps = 46/292 (15%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA 231 ++ + V+ L+I QV ++ I E+ +G Q I S++G S Sbjct: 329 NALQDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAMIQYSNTGASIGGV 387 Query: 232 --------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETV 259 D+ + G + + + Sbjct: 388 MVGLEEAKDTETTTAVYDKNGKFLGNETTTEQGDYSTLASALSGVNGAAMSVVMGDWTAL 447 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGV 314 + A+ + L+ P++T + ASF G + T S++ + +V + G+ Sbjct: 448 ISAVATDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSSNDNPFQTVERKEVGI 507 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L P + + L+I+ EVS V+G N + R+ +T+V + G +VL GL+ Sbjct: 508 KLKVVPQINEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLI 566 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + + +P L IP+LG LF+++ E+ + + P +++ D Sbjct: 567 DERALESESKVPFLGDIPVLGHLFKSTSTQVEKKNLMVFIKPTIIRDGMTAD 618 >gi|78484984|ref|YP_390909.1| type II and III secretion system protein [Thiomicrospira crunogena XCL-2] gi|78363270|gb|ABB41235.1| Type II secretion pathway protein D homolog [Thiomicrospira crunogena XCL-2] Length = 569 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 117/265 (44%), Gaps = 28/265 (10%) Query: 182 KKVMNLLNI---AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++V N L+ QV ++ T+ EV Q G S S+SG S + G Sbjct: 284 QQVKNYLDSSLNRTNKQVLIEATVVEVELSDQYQAGVDWSAVNSNSGGSSDISQSLLGTN 343 Query: 239 VSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 +S+ +FS+ + ++F + L++ + L+ P + A++ Q+A +Y T Sbjct: 344 LSKDPNFSINLSSIGTWNFNIGIKMLQQFGDAKVLSSPKIMAMNNQAALLKVVNNEVYFT 403 Query: 298 V------------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 V +T T+V T G ++H TP + S I L I+ +S V VN Sbjct: 404 VEVNRESATASSAGVTTYETTVHTVPVGFMMHVTPFI-SDDEISLNIRPTLSRIVGYVND 462 Query: 346 GD-----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + +P + R+ D+ + L + T ++ GL++D ++G+P LS +P + Sbjct: 463 PNPDLARENIESKVPIIQEREMDSVLRLRNRQTAIIGGLIQDTHDNQRQGVPGLSDLPWI 522 Query: 395 GALFRNSRFNREETEIFIAATPFLV 419 G LF ++E+ I P +V Sbjct: 523 GDLFSYRDDTVSKSELIIFIRPIIV 547 >gi|254516135|ref|ZP_05128195.1| type IV pilus secretin PilQ [gamma proteobacterium NOR5-3] gi|219675857|gb|EED32223.1| type IV pilus secretin PilQ [gamma proteobacterium NOR5-3] Length = 732 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 110/273 (40%), Gaps = 34/273 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKF 238 +++++L++I QV ++ I + D+ K++G Q + G ++G S D Sbjct: 459 RELIDLVDIPI-RQVMIESRIVIAQSDLEKELGIQWGGGYLDGDANGNILSVTGDAANAV 517 Query: 239 V--------------------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 S F+V + L ALE A + Sbjct: 518 NLNNSVINGTQPDLSYPGALLVDLGSGSATSGFAVGFTSNSLYLTAELSALEAAGKSEVV 577 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 ++P + Q A+ SG + ++ ++S GAT+V + + L TP + RI L + Sbjct: 578 SQPKVITGDKQPATIKSGTEIPFQQAAAS-GATAVQFKEAVLKLDVTPNITPDDRILLDL 636 Query: 333 QTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 V G +P+ + T V + +G T+VL G+ + + + +P Sbjct: 637 VINQDSVGDLVPSGQGGLIPAIDTTQLTTQVLVGNGETVVLGGVFRTENLETTSKVPFFG 696 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +P +GALFRN R +TE I TP ++ Sbjct: 697 DLPYVGALFRNESNQRTKTETLIFITPRILADT 729 >gi|297537658|ref|YP_003673427.1| type II and III secretion system protein [Methylotenera sp. 301] gi|297257005|gb|ADI28850.1| type II and III secretion system protein [Methylotenera sp. 301] Length = 838 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 78/454 (17%), Positives = 160/454 (35%), Gaps = 79/454 (17%) Query: 53 GLNKVIILQVPVDVQD-VLVSDPTKADV------------VVHSPRTMYLFGKNVGQANV 99 G+N ++ V D++ + V D + D V + T++++ Sbjct: 220 GINVLLDRDVKNDLKTTIFVKDASVEDTIGLILMQNQLEEKVLNENTVFIYP----STPA 275 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + + + + + D ++ ++ + +I + ++++V+ D+ Sbjct: 276 KIKEYQELVIRTFHL-VNADAKQMQTMIKTMLKTKDIFIHEKTNSLVMR-------DTPE 327 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217 AV+L+E ++ N +V L+V + EV + +IG Q Sbjct: 328 AVQLAEKLVAAQDLND------------------PEVMLEVEVLEVLHSKMTEIGVQWPT 369 Query: 218 --SITGSSSGPSKSFAADFGGKF----------VSEGGDFSVKGVLDRFSFETVLHALER 265 ++ + + + + GG EG + +L + Sbjct: 370 QFGLSVTDAPSTPTTTVGLGGAIQTTTPPPVPLTLEGLRNITGSNIKVTPLSLLLTMKKD 429 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHF 318 LA P + + A G + T S + +T SV D G+ L Sbjct: 430 VGDTNLLASPRIRVRQHEKAKIMIGDRVPVITNSVTPVSTGTPVVTGSVQYLDVGLKLEV 489 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR----VRKADTTVELPSGGTIVLAGLL 374 P + G + ++ EVS V + R A T + L G T VL GL+ Sbjct: 490 EPDIHIDGEVAIKTYLEVSNIANQVTNATSGTIAYQIGTRNASTVLRLKDGETQVLGGLI 549 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 D+ ++ +P L +PILG LF + ++ +TEI + TP +++ + + Sbjct: 550 SDEDRKSASKVPGLGDLPILGRLFSSHNNSKTKTEIILFITPHIIRNI-----------H 598 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468 D F+ ++ + + G G+ Sbjct: 599 QPAADLSEFWSGTDATLHSKPMSLQPVGVAKTGS 632 >gi|310777966|ref|YP_003966299.1| type II and III secretion system protein [Ilyobacter polytropus DSM 2926] gi|309747289|gb|ADO81951.1| type II and III secretion system protein [Ilyobacter polytropus DSM 2926] Length = 554 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 65/252 (25%), Positives = 107/252 (42%), Gaps = 16/252 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---------SGPSKSFAA 232 K +M+ +++ QV ++ I EV+ + G ++ SG S Sbjct: 239 KNIMDKIDVPD-LQVVIEARILEVQEGTGRDWGMSWGYNSNNLTEADSSDGSGGYLSGTD 297 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + G G+L F V + LA+P +T ++G+ A+ + Sbjct: 298 SYYDASSLSDGITLGLGLLGSDQFSAVYRNVVEDNTTEILAKPVITTLNGKKATIELTEE 357 Query: 293 HLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 Y + S +TS D G+ L TP + G I + + E+SE V G Sbjct: 358 VPYKELEYVSDSGDATSTSYEFKDVGITLEVTPVITDDGMIKIEVTPEISE-VTGYTDDG 416 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P RK +T V + +G T+ + GL+KD P LSKIPILG LF++S + + Sbjct: 417 VPYVSSRKVETNVIVRNGQTLAIGGLIKDTKSTTDTKDPYLSKIPILGYLFKSSSNEKSK 476 Query: 408 TEIFIAATPFLV 419 T + I TP ++ Sbjct: 477 TNLMIFITPKII 488 >gi|86146572|ref|ZP_01064894.1| Type II secretory pathway, component EpsD [Vibrio sp. MED222] gi|85835629|gb|EAQ53765.1| Type II secretory pathway, component EpsD [Vibrio sp. MED222] Length = 674 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 56/292 (19%), Positives = 112/292 (38%), Gaps = 46/292 (15%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA 231 ++ + V+ L+I QV ++ I E+ +G Q I S++G S Sbjct: 329 NALQDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAMIQYSNTGASIGGV 387 Query: 232 --------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETV 259 D+ + G + + + Sbjct: 388 MVGLEEAKDSTTTKAVYDKDNNFLRNETTTEKGDYSTLASALSGVNGAAMSVVMGDWTAL 447 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGV 314 + A+ + L+ P++T + ASF G + T S++ + +V + G+ Sbjct: 448 ISAVATDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSSNDNPFQTVERKEVGI 507 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L P + + L+I+ EVS V+G N + R+ +T+V + G +VL GL+ Sbjct: 508 KLKVVPQINEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLI 566 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + + +P L IP+LG LF+++ E+ + + P +++ D Sbjct: 567 DERALESESKVPFLGDIPVLGHLFKSTSTQVEKKNLMVFIKPTIIRDGMTAD 618 >gi|84386329|ref|ZP_00989357.1| Type II secretory pathway, component EpsD [Vibrio splendidus 12B01] gi|84378753|gb|EAP95608.1| Type II secretory pathway, component EpsD [Vibrio splendidus 12B01] Length = 674 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 56/292 (19%), Positives = 112/292 (38%), Gaps = 46/292 (15%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA 231 ++ + V+ L+I QV ++ I E+ +G Q I S++G S Sbjct: 329 NALQDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAMIQYSNTGASIGGV 387 Query: 232 --------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETV 259 D+ + G + + + Sbjct: 388 MVGLEEAKDSETTTAVYDSDGKFLRNETTTEEGDYSTLASALSGVNGAAMSVVMGDWTAL 447 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGV 314 + A+ + L+ P++T + ASF G + T S++ + +V + G+ Sbjct: 448 ISAVATDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSSNDNPFQTVERKEVGI 507 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L P + + L+I+ EVS V+G N + R+ +T+V + G +VL GL+ Sbjct: 508 KLKVVPQINEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLI 566 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + + +P L IP+LG LF+++ E+ + + P +++ D Sbjct: 567 DERALESESKVPFLGDIPVLGHLFKSTSTQVEKKNLMVFIKPTIIRDGMTAD 618 >gi|254490277|ref|ZP_05103466.1| type IV pilus secretin PilQ subfamily, putative [Methylophaga thiooxidans DMS010] gi|224464410|gb|EEF80670.1| type IV pilus secretin PilQ subfamily, putative [Methylophaga thiooxydans DMS010] Length = 672 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 107/266 (40%), Gaps = 31/266 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++V++ L+ QV ++ I D K++G + + S+ + G + Sbjct: 406 RQVIDELDKP-VRQVLIESRIVIANNDFNKELGVRFGTSAQSNTLGAGSSGSLTGLSTNP 464 Query: 242 GGD---------------------------FSVKGVLDRFSFETVLHALERATAIRTLAE 274 D ++ + E L A++ ++ Sbjct: 465 NNDDQIRANSVVGNDLNVNLPVSNPSGSIGLALAKLPLGMILELELSAMQAEGKGEVISS 524 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + + Q A+ G + Y+ +SS GAT+V+ + + L TP + RI + + Sbjct: 525 PRVITSNQQQATIEQGTEIPYQEATSS-GATNVSFKEAVLKLDVTPQITPDDRIVMDL-- 581 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EVS+ +G +PS R T V + +G T+VL G+ + E +P +P + Sbjct: 582 EVSKDEVGEVFLGVPSIDTRSVKTQVLVDNGETVVLGGIYEQSTNDNVERVPFFGDLPYV 641 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G LF+N+ + E+ + TP +VK Sbjct: 642 GFLFKNTFKEDRKRELLVFVTPKIVK 667 >gi|330958318|gb|EGH58578.1| general secretion pathway protein D [Pseudomonas syringae pv. maculicola str. ES4326] Length = 784 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 123/329 (37%), Gaps = 31/329 (9%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++ L+ QV ++ I EV D Q G Q Sbjct: 434 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDASQFGVQWQ 490 Query: 219 ITGSSSGPSKSFAADF-----------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261 S G G ++ G+ + + + Sbjct: 491 TGNLSGNGGFGGVNLGGSGLNSNGGTSIDVLPQGLNVGVVRGAVTIPGIGEVLDLKVLAR 550 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313 AL+ L+ P L + ++AS G + T S TG +V + G Sbjct: 551 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 610 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L I EVS + R DT++ L G +VL GL Sbjct: 611 LKLNVRPQISEGGTVKLDIYQEVSSVDQRASLEAGTVTNKRAIDTSILLDDGQIMVLGGL 670 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDD 432 L+D Q +P LS IP+LG LFRN + +T + + P++++ A R ++ + Sbjct: 671 LQDGYNQSNNAVPWLSNIPLLGVLFRNEARSTSKTNLMVFLRPYIIRDSGAGRSITL--N 728 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 Y A+ N +A ++ Sbjct: 729 RYDFMRRAQGNLQPERNWALPDTQAPQLP 757 >gi|261211295|ref|ZP_05925584.1| type II secretory pathway component PulD [Vibrio sp. RC341] gi|260839796|gb|EEX66407.1| type II secretory pathway component PulD [Vibrio sp. RC341] Length = 675 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 67/375 (17%), Positives = 134/375 (35%), Gaps = 72/375 (19%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181 + L+R I ++ + + V++ +D ++ +S+ ++ G Q S Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSDNLQAEKGTGQQTTSKR 304 Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216 +VM N L + QV ++ I E+ +G Q Sbjct: 305 NEVMIAAHSDTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364 Query: 217 HS-------ITGSSSGPS---------------------------------KSFAADFGG 236 I ++G S + D+ Sbjct: 365 WGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKKPIRNSDTGEIKYYEETTTKGDYST 424 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G + + ++ A+ + L+ P++T + ASF G + Sbjct: 425 LASALSGLQGAAVSIALGDWTALISAVSNDSKSNILSSPSITVMDNGEASFIVGEEVPVI 484 Query: 297 TVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 T S++ +V + G+ L P + + L+I+ EVS V+G N + Sbjct: 485 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSN-VLGANGAVDVRF 543 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR++ E+ + Sbjct: 544 AKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLM 603 Query: 412 IAATPFLVKPVAMRD 426 + P +++ D Sbjct: 604 VFIKPTIIRDGMTAD 618 >gi|323527881|ref|YP_004230034.1| general secretion pathway protein D [Burkholderia sp. CCGE1001] gi|323384883|gb|ADX56974.1| general secretion pathway protein D [Burkholderia sp. CCGE1001] Length = 785 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 68/313 (21%), Positives = 115/313 (36%), Gaps = 53/313 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ A QV ++ I E+ + +G Q + +S + A ++ Sbjct: 396 RAVIDQLD-ARRAQVYIEALIVELNSNTSGNLGIQWQVANNSVFAGTNLATGSSNSIINL 454 Query: 242 GGDFS-------------------------VKGVLDRFSFETVLHALERATAIRTLAEPT 276 + + + +L AL + L+ P Sbjct: 455 TAAAAAAGTTGGLATALGTQGIQQGLNIGWIHNIFGVQGLGALLQALSQTADANVLSTPN 514 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRI 328 L + + A G +T S S + D G+ LH P + G + Sbjct: 515 LITLDNEEAKIVVGTNVPIQTGSYSNLTSGNASSAFNTYDRVDVGLTLHVKPQITDGGIL 574 Query: 329 GLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L++ TE S V G P + R +TV +G IVL GL++D+ Q Sbjct: 575 KLQLYTEDSAIVNGTTNAATNPAGPQFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSK 634 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +PLL IP +G LFR+ + NR +T + + P ++ S D A+A Sbjct: 635 VPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVII---------------SDRDTAQAVT 679 Query: 445 FNRVNKIYGPKEA 457 NR + I G + A Sbjct: 680 SNRYDYIQGVQGA 692 >gi|145588279|ref|YP_001154876.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046685|gb|ABP33312.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 353 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 61/340 (17%), Positives = 129/340 (37%), Gaps = 35/340 (10%) Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 + K +G N +L + + I ++ + + L +A +R+ D + Sbjct: 39 VLAK-LGHTNFLL-----SESIKGKISVDLNNTPWQTALHSILASRGLRLVRNGDIYWI- 91 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 + +Y S +I Q+ ++ I E Sbjct: 92 ----------------GPHAEIAAFQKYRREDSALPFGGDHINSPSQILIEARIVEADER 135 Query: 209 ILKQIGF----QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL----DRFSFETVL 260 +++G Q ++ GS + S D GG ++ +V L + L Sbjct: 136 FARELGVKIGQQANLAGSRTDKKISANLDLGGAGLNGFNPATVAATLLSKDASRLLQMEL 195 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ALE + L+ P + A+ G + Y+T S + + + + L P Sbjct: 196 SALESEGQGKILSNPRIMTGDQVKATIEQGTELPYQTTSQN--GSKLQFRKANLRLEVLP 253 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + G+I + + +++ IG+ + + + V + +GGT ++ G+ + ++ Sbjct: 254 KIHPDGKISMLV--GINKDTIGMKTEQGYAIDTKSLSSEVTVENGGTAIIGGIYQTTERE 311 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + IPLL IP+ G LFR+ +++TE+ + TP ++ Sbjct: 312 DEVKIPLLGDIPLFGHLFRHKSKLKDKTELLVFLTPTVLD 351 >gi|86147328|ref|ZP_01065642.1| fimbrial assembly protein [Vibrio sp. MED222] gi|85834893|gb|EAQ53037.1| fimbrial assembly protein [Vibrio sp. MED222] Length = 564 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 108/267 (40%), Gaps = 31/267 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------------- 219 + ++ L+I QV ++ I V L ++G + + Sbjct: 298 RGIIESLDIP-VKQVQIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQIT 356 Query: 220 ----TGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G +S + G S F V + + L AL++ + ++ Sbjct: 357 PYDDNGGNSAIDDFLNVNLGATSPSASSIAFQVAKLGSDTLLDLELSALQQESKAEIISS 416 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L + + A G + Y SSS+GATSV + L TP + R+ L + Sbjct: 417 PRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSV 475 Query: 335 EVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 P V+ G+ + ++ T V + +G T+VL G+ + + + +PLL +P Sbjct: 476 TQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSQVDKVPLLGDLP 535 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 +LGALFR S N ++E+ I TP +V Sbjct: 536 VLGALFRRSYENVGKSELLIFVTPKVV 562 >gi|152986567|ref|YP_001350166.1| putative type II secretion system protein [Pseudomonas aeruginosa PA7] gi|150961725|gb|ABR83750.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] Length = 803 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 73/328 (22%), Positives = 133/328 (40%), Gaps = 29/328 (8%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++LL+ QV ++ I EV D + G Q Sbjct: 449 QADATTNTLLISAPEPLYRN--LREVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQ 505 Query: 219 ITG--------------SSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETVLH 261 S+ + + D K ++ G G + G+ + + Sbjct: 506 AGNLGGNGVIGGVNFGQSALNTAARNSIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLAR 565 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313 AL+ L+ P L + +SAS G + + +S+ ++ D G Sbjct: 566 ALKSRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVG 625 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L+ P + G + L + EVS + R DT++ L G +VL GL Sbjct: 626 LKLNIRPQISEGGTVKLDVYQEVSSVDERASTVAGVVTNKRAIDTSILLDDGQIMVLGGL 685 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 L+D++Q +G+P LS +P +G+LFR + +R +T + + P++V+ A S + Sbjct: 686 LQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMVFLRPYIVRDAAAG-RSITLNR 744 Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVE 461 Y A+ R + G +A + Sbjct: 745 YDFIRRAQQRVQPRHDWSVGDMQAPVLP 772 >gi|218708199|ref|YP_002415820.1| type II secretory pathway subunit EpsD [Vibrio splendidus LGP32] gi|218321218|emb|CAV17168.1| Type II secretory pathway, component EpsD [Vibrio splendidus LGP32] Length = 674 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 56/292 (19%), Positives = 112/292 (38%), Gaps = 46/292 (15%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA 231 ++ + V+ L+I QV ++ I E+ +G Q I S++G S Sbjct: 329 NALQDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAMIQYSNTGASIGGV 387 Query: 232 --------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETV 259 D+ + G + + + Sbjct: 388 MVGLEEAKDKTVDRVVTPSDGSKPYTVKETEKGDYSTLASALSGVNGAAMSVVMGDWTAL 447 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGV 314 + A+ + L+ P++T + ASF G + T S++ + +V + G+ Sbjct: 448 ISAVATDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSSNDNPFQTVERKEVGI 507 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L P + + L+I+ EVS V+G N + R+ +T+V + G +VL GL+ Sbjct: 508 KLKVVPQINEGDSVQLQIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLI 566 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + + +P L IP+LG LF+++ E+ + + P +++ D Sbjct: 567 DERALESESKVPFLGDIPVLGHLFKSTSTQVEKKNLMVFIKPTIIRDGMTAD 618 >gi|83748197|ref|ZP_00945224.1| PilQ [Ralstonia solanacearum UW551] gi|207744528|ref|YP_002260920.1| fimbrial type-4 assembly protein [Ralstonia solanacearum IPO1609] gi|83725165|gb|EAP72316.1| PilQ [Ralstonia solanacearum UW551] gi|206595934|emb|CAQ62861.1| fimbrial type-4 assembly protein [Ralstonia solanacearum IPO1609] Length = 713 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-----------------------SF 230 QV ++ I E + +G + S+G S Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFAAKSNGSGIGNTYSNVVSPVTTNGTWDNSSALSL 520 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV + L TP + G + L + +V++ +G + + Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLDV--DVNKDSVGTQTTNGFA 637 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PLL IP+LG LF+++ + TE+ Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 698 LVFLTPRVL 706 >gi|326315687|ref|YP_004233359.1| general secretion pathway protein D [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372523|gb|ADX44792.1| general secretion pathway protein D [Acidovorax avenae subsp. avenae ATCC 19860] Length = 804 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 110/285 (38%), Gaps = 41/285 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ QV ++ I EV + + + G Q + G + Sbjct: 428 RAVIDQLD-GRRAQVLVESLIVEVSANKVAEFGIQWQGVMGNYGNGTIGVIGTNSSASTT 486 Query: 242 GGDFSV-------------------------------KGVLDRFSFETVLHALERATAIR 270 GG+ ++ + + + + LE Sbjct: 487 GGNANILNLALAAATGNATSIASSASGLGKGLNVAIAPRINGNYYLGALANFLENTGDAN 546 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTV 322 L+ P L + + A G + T S + T+V D G++L P + Sbjct: 547 VLSTPNLMTLDNEEAQIIIGNNVPFVTGSYANTTGSSTVNPFTTVERKDVGLMLRVRPQI 606 Query: 323 LSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 G + L + EVS+ G NA + P+ R ++TV + G IVL GLL+D Sbjct: 607 NENGTVKLSLYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGNVIVLGGLLEDRYSMG 666 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++ +PL+ +P++G LFRN R++T + + P +++ A D Sbjct: 667 QDKVPLMGDLPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSD 711 >gi|299065464|emb|CBJ36633.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CMR15] Length = 714 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 97/249 (38%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-----------------------SF 230 QV ++ I E + +G + S+G S Sbjct: 462 RQVMIEARIVEADDTFSRNLGAKLGFAAKSNGSGVGNTYSNVVSPVTQNGTWDNSAAVSL 521 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A+ + S+ L ALE + ++ P + A G Sbjct: 522 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 581 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV+ + L TP + G + L + +V++ +G + + Sbjct: 582 TEVPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNVFLDV--DVNKDSLGTQTTNGFA 638 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + IPLL IP+LG LF+++ + TE+ Sbjct: 639 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKIPLLGDIPVLGNLFKSTAKTNDRTEL 698 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 699 LVFLTPRVL 707 >gi|319424897|gb|ADV52971.1| MSHA system outer membrane secretin, MshL [Shewanella putrefaciens 200] Length = 559 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 69/302 (22%), Positives = 122/302 (40%), Gaps = 22/302 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L ++ + ++ V + L + +N + QV L+ I EV Sbjct: 241 LTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEVT 300 Query: 207 RDILKQIGFQH-SITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHAL 263 Q G Q ++ G + +F G G V+ + F T+++ L Sbjct: 301 LSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINLL 360 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------G 313 + + L+ P +TA + Q A G + T SST G T VTT G Sbjct: 361 DTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSG 420 Query: 314 VVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELPS 364 + L TP + G + L + V + + ++P +R++DT + S Sbjct: 421 IALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAAS 480 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G +V+ GL+K + ++ +PLL IP+LG LF+N +++TE+ I P +V Sbjct: 481 GDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVVDGDTW 540 Query: 425 RD 426 ++ Sbjct: 541 KN 542 >gi|262166741|ref|ZP_06034478.1| type II secretory pathway component PulD [Vibrio mimicus VM223] gi|262026457|gb|EEY45125.1| type II secretory pathway component PulD [Vibrio mimicus VM223] Length = 653 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 68/375 (18%), Positives = 134/375 (35%), Gaps = 72/375 (19%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181 + L+R I ++ + + V++ +D ++ +SE ++ G Q S Sbjct: 223 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQQTTSKR 282 Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216 +VM N L + QV ++ I E+ +G Q Sbjct: 283 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 342 Query: 217 HS-------ITGSSSGPS---------------------------------KSFAADFGG 236 I ++G S + D+ Sbjct: 343 WGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKRPIRDSNTGAIKYYEETTTKGDYST 402 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G + + +++A+ + L+ P++T + ASF G + Sbjct: 403 LASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGEASFIVGEEVPVI 462 Query: 297 TVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 T S++ +V + G+ L P + + L I+ EVS V+G N + Sbjct: 463 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRF 521 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR++ E+ + Sbjct: 522 AKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLM 581 Query: 412 IAATPFLVKPVAMRD 426 + P +++ D Sbjct: 582 VFIKPTIIRDGVTAD 596 >gi|146291667|ref|YP_001182091.1| pilus (MSHA type) biogenesis protein MshL [Shewanella putrefaciens CN-32] gi|145563357|gb|ABP74292.1| pilus (MSHA type) biogenesis protein MshL [Shewanella putrefaciens CN-32] Length = 558 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 69/295 (23%), Positives = 120/295 (40%), Gaps = 22/295 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L ++ + ++ V + L + +N + QV L+ I EV Sbjct: 240 LTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEVT 299 Query: 207 RDILKQIGFQH-SITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHAL 263 Q G Q ++ G + +F G G V+ + F T+++ L Sbjct: 300 LSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINLL 359 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------G 313 + + L+ P +TA + Q A G + T SST G T VTT G Sbjct: 360 DTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSG 419 Query: 314 VVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELPS 364 + L TP + G + L + V + + ++P +R++DT + S Sbjct: 420 IALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAAS 479 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G +V+ GL+K + ++ +PLL IP+LG LF+N +++TE+ I P +V Sbjct: 480 GDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVV 534 >gi|308272100|emb|CBX28708.1| hypothetical protein N47_G40320 [uncultured Desulfobacterium sp.] Length = 818 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 106/248 (42%), Gaps = 13/248 (5%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGK 237 +K+++ L+ QV ++ I E ++IG S SSS ++ + Sbjct: 569 AKEIVKKLDKVTP-QVVIEARIVEATTSFSREIGVIWSADAGPNSSSSLGGTYDLNAAVN 627 Query: 238 FVSEGGDFSVKGV------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F + + G F L A+E + ++ P + + + A+ G Sbjct: 628 FPTTAANKGTIGFDFARINGSPFLLNAKLEAMEAQGEGKIVSAPKICTLDNKEATIKQGL 687 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 ++ Y + ++G T+ D + L P V RI + I+ + +G+ D S+ Sbjct: 688 RYPYNKL-DTSGNTTTVFEDVDLELKVKPHVTPDNRISMLIKIKKR--DLGIFINDQQSF 744 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 ++A+T + + G T+V+ G++K IP LS+IPILG F++ + E+ Sbjct: 745 TNKEAETELLVNDGDTVVIGGIIKTSKNTGGSLIPGLSRIPILGWFFKSDTKTDNKEELL 804 Query: 412 IAATPFLV 419 I TP +V Sbjct: 805 IFITPKIV 812 >gi|21230145|ref|NP_636062.1| general secretion pathway protein D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769864|ref|YP_244626.1| general secretion pathway protein D [Xanthomonas campestris pv. campestris str. 8004] gi|129748|sp|P29041|GSPD_XANCP RecName: Full=General secretion pathway protein D; Flags: Precursor gi|155391|gb|AAA27615.1| XpsD precursor [Xanthomonas campestris] gi|21111677|gb|AAM39986.1| general secretion pathway protein D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575196|gb|AAY50606.1| general secretion pathway protein D [Xanthomonas campestris pv. campestris str. 8004] Length = 759 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 82/313 (26%), Positives = 125/313 (39%), Gaps = 33/313 (10%) Query: 148 HGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 +G V + + ++ET + A S + V+ L++ QV ++ IAEV Sbjct: 431 NGSVTLEVEGDKVGVSAVAETNTLLVRTSAQAWKSIRDVIEKLDVM-PMQVHIEAQIAEV 489 Query: 206 RRDILKQIGFQH---------SITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRF 254 Q G S S GP+ AA G G V Sbjct: 490 TLTGRLQYGVNWYFENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGSVTSNGVAWTFLGK 549 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVT 308 + ++ AL++ T +R L P++ + A+ G + + S +TG +SV Sbjct: 550 NAAAIISALDQVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQ 609 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------------MPSYRVRKA 356 D GV+L P V G + L I EVS P A R+ Sbjct: 610 YIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTTVNSAACNVDINTRRV 669 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + +G TI+LAGL+ D GIP LSK+P++GALF N + E+ + TP Sbjct: 670 KTEAAVQNGDTIMLAGLIDDSTTDGSNGIPFLSKLPVVGALFGRKTQNSDRREVIVLITP 729 Query: 417 FLVK-PVAMRDLS 428 +V+ P RDL+ Sbjct: 730 SIVRNPQDARDLT 742 >gi|307825428|ref|ZP_07655647.1| general secretion pathway protein D [Methylobacter tundripaludum SV96] gi|307733603|gb|EFO04461.1| general secretion pathway protein D [Methylobacter tundripaludum SV96] Length = 712 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 121/330 (36%), Gaps = 28/330 (8%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 V + + + +++ + Q V+ L++ QV + TI V+ Sbjct: 393 EVANVGEVRIISDVANNSVIVVATPQEYEVILP-VIKQLDLL-PLQVLIDATIVSVKLTD 450 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----FSVKGVLDRFSFETVLHALER 265 + G Q + S S A G + + + + +L A Sbjct: 451 SLKYGIQWFLDHGGSSISSGNGAATLGSIATASAAAFTSGGLTAIYNSGIVNALLSAQAN 510 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-------------ATSVTTHDY 312 + ++ P+L ++ Q A G Q +T + + +S+ D Sbjct: 511 KGNVNIISSPSLMVLNNQEAKINVGDQVPIQTGTLGSVVGSGGTTGATTAIQSSIQYKDT 570 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371 GV L TP V + G + + I+ VS V P+ + ++ +++V + TIVL Sbjct: 571 GVTLEVTPRVNANGMVIMDIKQTVSSAVKTETGVNTSPTIQKKEIESSVAVQDSETIVLG 630 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL+ ++ GIP L+++P +G LF N+ + E+ + TP +VK Sbjct: 631 GLIDNNNSNAIGGIPWLNELPWIGPLFGNTDRENIKNELVVLITPRVVKSK--------Q 682 Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 D + D+ K + VE Sbjct: 683 DSRLISDEFKRKLTGIYEYKAAAPGSPAVE 712 >gi|167646061|ref|YP_001683724.1| general secretion pathway protein D [Caulobacter sp. K31] gi|167348491|gb|ABZ71226.1| general secretion pathway protein D [Caulobacter sp. K31] Length = 681 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 120/249 (48%), Gaps = 14/249 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ + EV + + G Q I + S+ AD F + Sbjct: 426 PLQVVIEAVVTEVSLNDALRYGSQWFIRSGDDRAILSRGKTADPASTFP------GFTYL 479 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---SSTGATSV 307 L+R S L AL T + L+ P L ++ Q+AS G Q T S SS+ +S+ Sbjct: 480 LNRSSIAATLDALSSVTHVEVLSAPNLMVLNNQTASLEVGDQVPVSTGSALNSSSVISSI 539 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGG 366 D GV+L TP V S G + L I EVS+ +++ D P+ VRK T++ + G Sbjct: 540 EYRDTGVLLKITPRVNSGGLVLLDIAQEVSDVSPTLSSTIDSPTISVRKIATSIAVQDGQ 599 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T+ L GL++D+ ++L+ G+P LS +P+LGAL + +RE TE+ + TP +++ D Sbjct: 600 TVALGGLIRDNNKRLRNGVPFLSAVPVLGALAGSRDNSRERTELLVLLTPRVLRNSG--D 657 Query: 427 LSRPDDHYS 435 + D Sbjct: 658 IQAVTDELR 666 >gi|261365347|ref|ZP_05978230.1| type IV pilus biogenesis protein PilQ [Neisseria mucosa ATCC 25996] gi|288566287|gb|EFC87847.1| type IV pilus biogenesis protein PilQ [Neisseria mucosa ATCC 25996] Length = 711 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 112/269 (41%), Gaps = 30/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------------- 222 +K++ L++ QV ++ I E + + +G + + GS Sbjct: 439 RKLIEELDVPT-RQVMVEARIVEAKDGFSRDLGVKFGVAGSKGRNAWGNSWSNAQDNHNT 497 Query: 223 --------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 ++ P+ S + + + ++ L + + A E +T++ Sbjct: 498 NSAVLRGDANYPTWSLQPNISLPAAAATNNIALVRALSSGALGLEISASEATGKSKTISN 557 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + + A+ SG + Y+ SSS GATSV+ + L TP V G++ + ++ Sbjct: 558 PRVLTQDRREATIESGTEIPYQEASSS-GATSVSFKKAVLGLTVTPNVTPDGQVIMTVKI 616 Query: 335 EVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 P V++ + + +T + GGT+++ G+ ++D +PLL +P+ Sbjct: 617 TKDTPQDCTVDSLITKCIQTKNLNTQAMVEDGGTLIVGGIYEEDNSDTINKVPLLGDLPV 676 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422 +G LF++ E E+ + TP ++ V Sbjct: 677 VGNLFKSRAKKEERRELLVFITPRIMDGV 705 >gi|153947341|ref|YP_001402915.1| outer membrane porin HofQ [Yersinia pseudotuberculosis IP 31758] gi|152958836|gb|ABS46297.1| protein transporter HofQ [Yersinia pseudotuberculosis IP 31758] Length = 458 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + + L+++G + + G+++ F + + F V + Sbjct: 227 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 286 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + LE+ + +A P L Q+AS G Y A ++ Sbjct: 287 GGRLLELELSA-LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 345 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P I + G+ M ++ T V + G TI Sbjct: 346 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 405 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + +Q +PLL+ IP+LGA+FR + E+ I TP L+ Sbjct: 406 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLI 456 >gi|224171310|ref|XP_002339480.1| predicted protein [Populus trichocarpa] gi|222875215|gb|EEF12346.1| predicted protein [Populus trichocarpa] Length = 263 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 101/254 (39%), Gaps = 22/254 (8%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---------SFAADF 234 ++N L+ QV ++ I E + G + S + Sbjct: 15 LINQLDEP-VKQVLIEARIVEADTSAEQTFGIHWGFEFDNDSGSSGGGIGSSLDNAVVGL 73 Query: 235 GGKFVSEGGDFSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 GG F++ G LD + L ALE + + ++ P + A+ G++A Sbjct: 74 GGNFITPTSATDGLGTALTFGRVGLDTIVLDLQLSALESSGGGKVISSPKVMALDGETAR 133 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 G + YKT S + T+ + L TP + I L I S P GV Sbjct: 134 IGQGTEIPYKTTSDN--GTTTEFKKAELALEVTPLINPDNTILLEILATNSSP--GVAYT 189 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D + ++A+T + L +G T V+ G+ ++ Q G P L +P +G LF+ + + Sbjct: 190 DGVAINTKEAETKLLLKNGETTVIGGIYTENEQNSDSGTPYLKDLPFIGNLFKYKTSSND 249 Query: 407 ETEIFIAATPFLVK 420 TE+ I TP +V Sbjct: 250 RTELLIFLTPHIVD 263 >gi|160873627|ref|YP_001552943.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS195] gi|160859149|gb|ABX47683.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS195] gi|315265856|gb|ADT92709.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS678] Length = 559 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 67/296 (22%), Positives = 117/296 (39%), Gaps = 23/296 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L ++ + ++ V + L + +N + QV L+ I EV Sbjct: 240 LTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEVT 299 Query: 207 RDILKQIGFQH-SITGSSSGPSKSFAADFGGKF---VSEGGDFSVKGVLDRFSFETVLHA 262 Q G Q ++ G + +F G ++ + F T+++ Sbjct: 300 LSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMINL 359 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312 L+ + L+ P +TA + Q A G + T SST GAT VTT Sbjct: 360 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFFS 419 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELP 363 G+ L TP + S G + L + V + + +R++DT + Sbjct: 420 GIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAA 479 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +++ GL+K + ++ +PLL IP LG LF+N +++TE+ I P +V Sbjct: 480 SGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535 >gi|297517403|ref|ZP_06935789.1| general secretory pathway component, cryptic [Escherichia coli OP50] Length = 503 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 118/318 (37%), Gaps = 24/318 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSG 225 +Q V+ L+I QV ++ I EV+ +G Q + +++G Sbjct: 178 TADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTG 236 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS-------------FETVLHALERATAIRTL 272 AA + GG S D FS + +L AL L Sbjct: 237 LPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDIL 296 Query: 273 AEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 A P++ + + ASF G +T S +V G L TP V + Sbjct: 297 ATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAV 356 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I+ EVS N+ P++ R V + +G T+VL GLL D ++ PLL Sbjct: 357 LLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKAPLL 416 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP++G LFR + R + + + P +++ + + + + + + Sbjct: 417 GDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKS 476 Query: 449 NKIYGPKEASEVEGQNYK 466 + G ++ ++ + Sbjct: 477 KALVGSEDLPVLDENTFN 494 >gi|167834842|ref|ZP_02461725.1| general secretion pathway protein D [Burkholderia thailandensis MSMB43] Length = 749 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 112/311 (36%), Gaps = 51/311 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----------------------S 218 + V++ L+ QV ++ I E+ + +G Q S Sbjct: 387 RAVIDQLDFR-RAQVYIEALIVELNSNTAGNLGIQWQVASGALLAGTNLAATAGTIAGNS 445 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEP 275 I ++G S A S +V + + F +L + L+ P Sbjct: 446 IINLTAGNGTSTGAGVAANLASLNQGLNVGWLHNMFGVQGLGALLQYFAGVSDANVLSTP 505 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGR 327 L + + A G T S S + T D G+ LH P + G Sbjct: 506 NLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTNNAFNTYDRRDVGLTLHVKPQITDGGI 565 Query: 328 IGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + L++ TE S NA PS+ R +T+ +G IVL GL++D Q +P Sbjct: 566 LKLQLYTEDSAVETSTQNAVTGPSFTKRSIQSTILADNGEIIVLGGLMQDSYQVANSKVP 625 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 LL IP LG LFR+ R++T + + P ++ + A+A N Sbjct: 626 LLGDIPWLGQLFRSESKQRKKTNLMVFLRPVIIND---------------RETAQAVTAN 670 Query: 447 RVNKIYGPKEA 457 R + I G + Sbjct: 671 RYDYIQGVTGS 681 >gi|22127802|ref|NP_671225.1| putative outer membrane porin HofQ [Yersinia pestis KIM 10] gi|45440014|ref|NP_991553.1| putative outer membrane porin HofQ [Yersinia pestis biovar Microtus str. 91001] gi|108814075|ref|YP_649842.1| putative outer membrane porin HofQ [Yersinia pestis Nepal516] gi|150260832|ref|ZP_01917560.1| putative membrane transport protein [Yersinia pestis CA88-4125] gi|218927361|ref|YP_002345236.1| putative outer membrane porin HofQ [Yersinia pestis CO92] gi|229310101|ref|YP_072232.2| outer membrane porin HofQ [Yersinia pseudotuberculosis IP 32953] gi|229358042|ref|YP_653226.2| putative outer membrane porin HofQ [Yersinia pestis Antiqua] gi|294502239|ref|YP_003566301.1| putative membrane transport protein [Yersinia pestis Z176003] gi|21960932|gb|AAM87476.1|AE013997_11 putative transport portein [Yersinia pestis KIM 10] gi|45434869|gb|AAS60430.1| putative membrane transport protein [Yersinia pestis biovar Microtus str. 91001] gi|108777723|gb|ABG20242.1| membrane transport protein [Yersinia pestis Nepal516] gi|115345972|emb|CAL18836.1| putative membrane transport protein [Yersinia pestis CO92] gi|149290240|gb|EDM40317.1| putative membrane transport protein [Yersinia pestis CA88-4125] gi|262364270|gb|ACY60827.1| putative membrane transport protein [Yersinia pestis D182038] gi|294352698|gb|ADE63039.1| putative membrane transport protein [Yersinia pestis Z176003] Length = 374 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + + L+++G + + G+++ F + + F V + Sbjct: 143 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 202 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + LE+ + +A P L Q+AS G Y A ++ Sbjct: 203 GGRLLELELSA-LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 261 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P I + G+ M ++ T V + G TI Sbjct: 262 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 321 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + +Q +PLL+ IP+LGA+FR + E+ I TP L+ Sbjct: 322 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLI 372 >gi|330966297|gb|EGH66557.1| general secretion pathway protein D [Pseudomonas syringae pv. actinidiae str. M302091] Length = 775 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 103/262 (39%), Gaps = 19/262 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ I EV +G Q + +SG + + G + G ++ Sbjct: 501 PLQVQIETRILEVSLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 560 Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTV 298 F + + L ALE + L+ P+L ++ Q A G Sbjct: 561 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 620 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRK 355 S++T +SV GV+L P + G + + IQ +VS N P R Sbjct: 621 STNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSNADTNTNNNDANGNPRISSRS 680 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V SG T++L GL+K D + +P L +IP L LF N+ ++ TE+ + T Sbjct: 681 VSTQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTTKSKGRTELIVLIT 740 Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437 P ++ + + D Y + Sbjct: 741 PRVI--TSSSQARQVTDDYRQQ 760 >gi|158521417|ref|YP_001529287.1| type II and III secretion system protein [Desulfococcus oleovorans Hxd3] gi|158510243|gb|ABW67210.1| type II and III secretion system protein [Desulfococcus oleovorans Hxd3] Length = 538 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 68/315 (21%), Positives = 125/315 (39%), Gaps = 46/315 (14%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--------------EDQV 196 V + A S + ++ ++ + + V+ + G QV Sbjct: 205 VANLLKPVTARAASAEGVKEAQQSVVVDKRNNAVIVHTPLPGIEQCAALIRQIDRPTRQV 264 Query: 197 TLKVTIAEVRRDILKQIGFQHS----------ITGSSSGP-----------------SKS 229 ++ I E +D +Q+G Q TG++ GP + + Sbjct: 265 LIEAHIVETSKDTARQLGIQWGGVAKDKQHSWFTGATEGPAGQTLFDANGVPVAANPTGN 324 Query: 230 FAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 +AA+F + G + L + L ALE + L+ P++T + +A Sbjct: 325 WAANFPASLGNTGLSLGYIYQDLGQSLIAAQLTALEEDGKLNILSSPSITTLDNSAAVIE 384 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAG 346 SG ++TV ++ + L TP ++ + ++I+T E V Sbjct: 385 SGRDVPFQTV--EDNEVNIEWKKAVLSLAVTPHIIDASTLRVKIKTHKDELDWSNAVLTD 442 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P+ + A+T + L G T V+ GL K Q + G+PLL +IPILG FR++ + + Sbjct: 443 GNPTIITKNAETEMILFDGQTTVIGGLNKQSSSQSQFGVPLLGRIPILGFFFRSTSRSND 502 Query: 407 ETEIFIAATPFLVKP 421 E+ I TP +++P Sbjct: 503 MEEVLIFITPHILEP 517 >gi|325206729|gb|ADZ02182.1| type IV pilus secretin PilQ [Neisseria meningitidis M04-240196] Length = 761 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553 Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 554 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 613 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + S + G +S T + L TP + G+I + ++ P Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673 Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 734 RGKKTDRRELLIFITPRIM 752 >gi|300114921|ref|YP_003761496.1| general secretion pathway protein D [Nitrosococcus watsonii C-113] gi|299540858|gb|ADJ29175.1| general secretion pathway protein D [Nitrosococcus watsonii C-113] Length = 833 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 68/272 (25%), Positives = 113/272 (41%), Gaps = 16/272 (5%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF------AADFGGKF 238 + L+I QV ++ TIAEV Q G Q T + + A GG Sbjct: 532 LRQLDIP-PRQVLVEATIAEVALTGSLQYGLQWYFTNDLASGQGAGGQGALPALGEGGLQ 590 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G D +L L + L+ P L A+ Q+A G Q + Sbjct: 591 ALMAGGGFTYAFADGGVVRALLRLLASENKVEILSSPQLLALDNQTAEIRVGDQVPIQQG 650 Query: 299 SSSTGATSVT---THDYGVVLHFTPTVLSPGRIGLRIQTEV------SEPVIGVNAGDMP 349 ++ + D GV+L TP V + GR+ + + EV S P G P Sbjct: 651 QTTGIGGTTQQIRYRDTGVLLTVTPRVNAGGRVTMELTQEVTDVGGTSLPGGATTVGGNP 710 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R + V + SG TIVL GL++++ + G+P L K+P++G LF + +R+ TE Sbjct: 711 TFLQRNFQSVVTVQSGETIVLGGLIRNNDAFNQSGVPFLYKLPLIGPLFGTTTRSRQRTE 770 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 + + TP +V+ L + +++ + Sbjct: 771 LVVLMTPRVVRDQYEARLVTEELREKLKNASD 802 >gi|241759496|ref|ZP_04757600.1| fimbrial assembly protein PilQ [Neisseria flavescens SK114] gi|241320278|gb|EER56611.1| fimbrial assembly protein PilQ [Neisseria flavescens SK114] Length = 710 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 104/269 (38%), Gaps = 30/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------- 226 +K+++ L++ QV ++ I E + +G + G+ Sbjct: 438 RKLIDELDVPT-RQVMVEARIVEAEDTFFRNLGVKFGSGGAIGRTAWGSNWSNAQTNYKT 496 Query: 227 ------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + + + + ++ + + A E +T++ Sbjct: 497 NASFNRGEVGYRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISN 556 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + + A SG + Y+ SSS GATS+T + L TP + G+I + ++ Sbjct: 557 PRVLTQDRKEAKIESGTEIPYQEASSS-GATSITFKKAVLGLTVTPNITPDGQIIMTVKI 615 Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 P+ V++ + +T + GGT+++ G+ +++ +P+L IP+ Sbjct: 616 NRDTPIDCTVDSLMTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPV 675 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422 +G LF++ E+ I TP ++ V Sbjct: 676 VGNLFKSRGKRENRRELLIFITPRIMDNV 704 >gi|152999034|ref|YP_001364715.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS185] gi|151363652|gb|ABS06652.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS185] Length = 559 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 67/296 (22%), Positives = 117/296 (39%), Gaps = 23/296 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L ++ + ++ V + L + +N + QV L+ I EV Sbjct: 240 LTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEVT 299 Query: 207 RDILKQIGFQH-SITGSSSGPSKSFAADFGGKF---VSEGGDFSVKGVLDRFSFETVLHA 262 Q G Q ++ G + +F G ++ + F T+++ Sbjct: 300 LSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMINL 359 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312 L+ + L+ P +TA + Q A G + T SST GAT VTT Sbjct: 360 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFFS 419 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELP 363 G+ L TP + S G + L + V + + +R++DT + Sbjct: 420 GIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAA 479 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +++ GL+K + ++ +PLL IP LG LF+N +++TE+ I P +V Sbjct: 480 SGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535 >gi|218710790|ref|YP_002418411.1| type IV pilus assembly protein PilQ [Vibrio splendidus LGP32] gi|218323809|emb|CAV20166.1| type IV pilus assembly protein PilQ [Vibrio splendidus LGP32] Length = 572 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 108/267 (40%), Gaps = 31/267 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------------- 219 + ++ L+I QV ++ I V L ++G + + Sbjct: 306 RGIIESLDIP-VKQVQIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQIT 364 Query: 220 ----TGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G +S + G S F V + + L AL++ + ++ Sbjct: 365 PYDDNGGNSAIDDFLNVNLGATSPSASSIAFQVAKLGSDTLLDLELSALQQESKAEIISS 424 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L + + A G + Y SSS+GATSV + L TP + R+ L + Sbjct: 425 PRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSV 483 Query: 335 EVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 P V+ G+ + ++ T V + +G T+VL G+ + + + +PLL +P Sbjct: 484 TQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSQVDKVPLLGDLP 543 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 +LGALFR S N ++E+ I TP +V Sbjct: 544 VLGALFRRSYENVGKSELLIFVTPKVV 570 >gi|325204768|gb|ADZ00222.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240355] Length = 761 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553 Query: 236 GK------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 554 GGDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 613 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + S + G +S T + L TP + G+I + ++ P Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673 Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 734 RGKKTDRRELLIFITPRIM 752 >gi|74317457|ref|YP_315197.1| type II secretion system protein D [Thiobacillus denitrificans ATCC 25259] gi|74056952|gb|AAZ97392.1| type II secretion system protein D [Thiobacillus denitrificans ATCC 25259] Length = 656 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 100/445 (22%), Positives = 176/445 (39%), Gaps = 55/445 (12%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 P+ K ++ +A + N+ D+ + GLN V V +D + L + T D Sbjct: 175 LGPAFHKPITLEFRDAPLRNVFDMIARQS-----GLNFVFDKDVRLDTKATLFARNTPID 229 Query: 79 VVVHSPRTMYLFGKNVGQANVILI--GHDGKQMLNLDILI------ERDIAHLEMTLRRF 130 V K V AN +LI KQ ++++ D LR Sbjct: 230 EAVDMLLMTGQLSKKVVNANTLLIYPDQPQKQKAYQELMVKSFYLGNADAKATMAMLRTL 289 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + ++ V+ + +V+ D+ A+ L+E ++ + Sbjct: 290 VKAKDLHVDERLNLLVMR-------DTPDAIRLAERIVA------------------VQD 324 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGDFSVK 248 E +V L+V + EV+R L +G Q+ S P+ S GG + SV Sbjct: 325 LAEPEVMLEVEVLEVKRGRLLDLGIQYPTNFSLLNLPPATSSTIGPGGVVTNTTPPPSVL 384 Query: 249 GVLDRFSFETV---------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 V + + ++ + + LA P + + + A G + T + Sbjct: 385 TVESLKNITASQIAISPTPGVDLRKQDSDVNILANPRIRVKNREKAKIHIGDKVPVITSN 444 Query: 300 SSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRV 353 +++ SV+ D G+ L P+VL + +R+ EVS V + +G+ Sbjct: 445 TTSTGVVSESVSYLDVGLKLDVEPSVLMREDVQIRVGLEVSNIVREIRSGNGTLTYQIGT 504 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R A TT+ L G T VLAGL+ D+ + IP L +P++G LF + R R +TEI + Sbjct: 505 RNAGTTLRLKDGETQVLAGLISDEDRSTASRIPGLGDLPLIGRLFSSQRDERNKTEIVLL 564 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVED 438 TP +++ A R + + E+ Sbjct: 565 ITPRVLRSDATRLPALTEFRGGTEN 589 >gi|261820712|ref|YP_003258818.1| general secretion pathway protein D [Pectobacterium wasabiae WPP163] gi|261604725|gb|ACX87211.1| general secretion pathway protein D [Pectobacterium wasabiae WPP163] Length = 640 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 69/349 (19%), Positives = 127/349 (36%), Gaps = 45/349 (12%) Query: 146 VLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYAN----------SSSKKVMNLLNIAGED 194 VL G+ +IQ D Q A+ +S Q + ++V+ L+I Sbjct: 266 VLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP- 324 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKF 238 QV ++ IAEV+ +G Q + + + + Sbjct: 325 QVLVEAIIAEVQDADGMNLGVQWANKNAGTTQFTNTGLPITTMMAGADQFRRNGTLSTAA 384 Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 S G F+ + + ++ ++ AL + LA P++ + A+F G + Sbjct: 385 TSALGSFNGIAAGFYQGNWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLA 444 Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PS 350 +T S +V G+ L P + + L I+ EVS ++ + Sbjct: 445 GSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSAELGAT 504 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+V+ GLL ++ +PLL IPILG LFR++ + + Sbjct: 505 FNTRTVNNAVLVSSGETVVVGGLLDKSTRESASKVPLLGDIPILGHLFRSNSQETSKRNL 564 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + P +++ + Y +K FN + E Sbjct: 565 MLFIRPSIIRDRS---------EYQSASASKYRSFNNEEEKQRNVSNGE 604 >gi|120600401|ref|YP_964975.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. W3-18-1] gi|120560494|gb|ABM26421.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. W3-18-1] Length = 558 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 69/295 (23%), Positives = 120/295 (40%), Gaps = 22/295 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L ++ + ++ V + L + +N + QV L+ I EV Sbjct: 240 LTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEVT 299 Query: 207 RDILKQIGFQH-SITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHAL 263 Q G Q ++ G + +F G G V+ + F T+++ L Sbjct: 300 LSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINLL 359 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY-------G 313 + + L+ P +TA + Q A G + T SST G T VTT G Sbjct: 360 DTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSG 419 Query: 314 VVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELPS 364 + L TP + G + L + V + + ++P +R++DT + S Sbjct: 420 IALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAAS 479 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G +V+ GL+K + ++ +PLL IP+LG LF+N +++TE+ I P +V Sbjct: 480 GDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVV 534 >gi|158520346|ref|YP_001528216.1| type IV pilus secretin PilQ [Desulfococcus oleovorans Hxd3] gi|158509172|gb|ABW66139.1| type IV pilus secretin PilQ [Desulfococcus oleovorans Hxd3] Length = 987 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 111/259 (42%), Gaps = 24/259 (9%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------- 233 +++++ ++ QV +K I E ++ G + I + P+ + D Sbjct: 732 AREIIAKIDKVTP-QVMIKARIVETSSSFSREFGTEWGIDNRYNSPNINIGTDGAYRDEM 790 Query: 234 ------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + G + + FS + L +E ++ ++ P + + Sbjct: 791 GGTYTYDVALNSLSSPVQNLIGINFARIIGTPFSLDAKLSLMESTGDVKIISTPKVVTLD 850 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 ++A+ + G + Y V G V + L TP V RI +++ + ++ Sbjct: 851 NKTATISQGIDYPYTVV--EDGEADVKWKTIDLNLDVTPHVTPDDRISMKLNIQKNDVGE 908 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +N S+ ++A T + + G T+V+ G++K+ + G+P +SKIP+LG LF+ Sbjct: 909 IINGEQ--SFNTKRASTELLVNDGDTVVIGGIIKEREGAGERGVPWISKIPVLGNLFKYK 966 Query: 402 RFNREETEIFIAATPFLVK 420 + E++E+ I TP +V+ Sbjct: 967 TRSDEKSELLIFITPNVVR 985 >gi|94500719|ref|ZP_01307248.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65] gi|94427041|gb|EAT12022.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65] Length = 640 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 106/263 (40%), Gaps = 23/263 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---- 234 S K+++ L++ QV ++ I EV + ++G Q + +G + A DF Sbjct: 338 SEIKEIVTELDVR-RAQVLIEAAIVEVTGQVDDRVGVQTAALDQETGETPLVATDFANAG 396 Query: 235 ------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G +S G G F ++ ALE + L+ P++ + Sbjct: 397 TSISQLITGIATGQPAISSGLTLGGVGQNGDTEFAFLVQALESVSNANLLSTPSIMTMDN 456 Query: 283 QSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A G + T S+S+ + T++ D G L TP V + L ++ Sbjct: 457 HEAEIIVGQNVPFVTGSTSSTSNSNPFTTIKREDIGTTLKVTPHVQDGKFVRLSVEQSTE 516 Query: 338 EPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 G R T + +G ++L GL++D +Q+ + +P L IPI+G Sbjct: 517 SVAPTAVEGQADLITNKRSIQTQILAENGEIVMLGGLIRDAVQESESKVPFLGDIPIIGW 576 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFR++ +R + + + P +V Sbjct: 577 LFRSTSESRVKQNLIVFLKPTVV 599 >gi|294139057|ref|YP_003555035.1| MSHA biogenesis protein MshL [Shewanella violacea DSS12] gi|293325526|dbj|BAJ00257.1| MSHA biogenesis protein MshL [Shewanella violacea DSS12] Length = 560 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 66/251 (26%), Positives = 109/251 (43%), Gaps = 24/251 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV- 250 + QV ++ I EV Q G ++ G + F GG +S+ + GV Sbjct: 279 QRQVIIEAKILEVTLSDGYQQGINWQNVLGHVGDTNIEFGTSSGGNSLSDQITSVIGGVT 338 Query: 251 ---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GA 304 F +++ L+ + L+ P +TA++ Q A G + T SST G Sbjct: 339 SLKFSGTDFAAMINLLDTQGDVDVLSSPRVTALNNQKAVIKVGTDEYFVTDVSSTTVAGN 398 Query: 305 TSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP- 349 T +TT + G+ L TP + G + L I V I + ++P Sbjct: 399 TPITTPEVELTPFFSGIALDVTPQIDGEGNVLLHIHPSVISIKEQTKTIKISDSTLELPL 458 Query: 350 -SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 +R++DT + SG +V+ GL+K + +L +PLL IP+LG LF N + ++T Sbjct: 459 AQSDIRESDTVIMARSGDVVVIGGLMKSENIELLSKVPLLGDIPLLGELFTNRSKSLKKT 518 Query: 409 EIFIAATPFLV 419 E+ I P +V Sbjct: 519 ELVILLKPTVV 529 >gi|89899353|ref|YP_521824.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89344090|gb|ABD68293.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 702 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 61/310 (19%), Positives = 113/310 (36%), Gaps = 33/310 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ QV ++ I EV D + G Q G G F + Sbjct: 371 RAVIDRLD-GRRAQVLVESLIVEVNADRAAEFGIQW--QGPLGKAGDGVIGLLGTNFGAA 427 Query: 242 GGDF-------------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G + +V+ + + + LE + + L+ P L + Sbjct: 428 GKNIINLATGAGAVAPGAGLNFGAVQRTNGVYVLGFLANFLETSGSGNVLSTPNLLTLDN 487 Query: 283 QSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + A G + T S ++ T +V D G+ L P + G + + I Sbjct: 488 EEAKIVIGENVPFVTGSYTSNNTSGASVNPFTTVERKDVGLTLKVKPQINEDGTVKMVIY 547 Query: 334 TEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 E S G + P+ R ++TV + G +VL GLL+D ++ +P L +P Sbjct: 548 QETSAVKAGTEKDANGPTTSKRTIESTVLVDDGSIVVLGGLLQDKYSGNQDKVPGLGDVP 607 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 + G LF++ R +T + + P +V+ D D Y + +++ Sbjct: 608 LFGNLFKSEARTRNKTNLMVFLRPVVVRDAHASD-QLSMDRYDLMRSGMNAAQPVASQLV 666 Query: 453 GPKEASEVEG 462 EA ++ Sbjct: 667 PINEAPQLPA 676 >gi|73542913|ref|YP_297433.1| type II and III secretion system protein:NolW-like [Ralstonia eutropha JMP134] gi|72120326|gb|AAZ62589.1| type II and III secretion system protein:NolW-like [Ralstonia eutropha JMP134] Length = 804 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 72/301 (23%), Positives = 114/301 (37%), Gaps = 40/301 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVS 240 + V+ L+ A QV ++ I EV Q+G Q + SSSG + FA G Sbjct: 424 RAVIEDLD-ARRAQVYIESMIVEVTSTQASQLGIQWQGLLSSSSGNNNVFAGTNFGTGGQ 482 Query: 241 EGGDFSVKGVLDRFSFETVLHALER----------------------------ATAIRTL 272 + ++ G L + + A ++ ++ L Sbjct: 483 NILNLTLAGALYNSNHSAGIVAAQQLVPDVGGLNLGVVNKALGLGALLRALGTNGSVNLL 542 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVT------THDYGVVLHFTPTVLS 324 + P L + + A G T S + GA SVT D G+ L P + Sbjct: 543 STPNLITLENEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVRPQITD 602 Query: 325 PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G + ++I E S V G P+ VR +T V + G IVL GL++D + Sbjct: 603 GGLVKMQIFQESSSVVPGTLTQVQGPTTNVRSIETNVLVDDGQIIVLGGLIEDSYGDGVQ 662 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +PLL IP +G LFR NR +T + + P++++ D D Y + Sbjct: 663 KVPLLGDIPWIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAAD-RLTQDRYDYMRAQQTD 721 Query: 444 F 444 F Sbjct: 722 F 722 >gi|304411539|ref|ZP_07393152.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS183] gi|307306685|ref|ZP_07586427.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica BA175] gi|304350066|gb|EFM14471.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS183] gi|306910653|gb|EFN41082.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica BA175] Length = 559 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 67/296 (22%), Positives = 117/296 (39%), Gaps = 23/296 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L ++ + ++ V + L + +N + QV L+ I EV Sbjct: 240 LTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEVT 299 Query: 207 RDILKQIGFQH-SITGSSSGPSKSFAADFGGKF---VSEGGDFSVKGVLDRFSFETVLHA 262 Q G Q ++ G + +F G ++ + F T+++ Sbjct: 300 LSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMINL 359 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312 L+ + L+ P +TA + Q A G + T SST GAT VTT Sbjct: 360 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFFS 419 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELP 363 G+ L TP + S G + L + V + + +R++DT + Sbjct: 420 GIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAA 479 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +++ GL+K + ++ +PLL IP LG LF+N +++TE+ I P +V Sbjct: 480 SGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535 >gi|325135596|gb|EGC58213.1| type IV pilus secretin PilQ [Neisseria meningitidis M0579] Length = 761 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553 Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 554 GDDKWEAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 613 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + S + G +S T + L TP + G+I + ++ P Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673 Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 734 RGKKTDRRELLIFITPRIM 752 >gi|325131459|gb|EGC54166.1| type IV pilus secretin PilQ [Neisseria meningitidis M6190] gi|325137566|gb|EGC60147.1| type IV pilus secretin PilQ [Neisseria meningitidis ES14902] gi|325197687|gb|ADY93143.1| type IV pilus secretin PilQ [Neisseria meningitidis G2136] gi|325201543|gb|ADY96997.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240149] gi|325207524|gb|ADZ02976.1| type IV pilus secretin PilQ [Neisseria meningitidis NZ-05/33] Length = 769 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 503 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 561 Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 562 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 621 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + S + G +S T + L TP + G+I + ++ P Sbjct: 622 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 681 Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 682 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 741 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 742 RGKKTDRRELLIFITPRIM 760 >gi|254804373|ref|YP_003082594.1| fimbrial assembly protein; pilus secretin [Neisseria meningitidis alpha14] gi|304388332|ref|ZP_07370446.1| type IV pilus secretin PilQ [Neisseria meningitidis ATCC 13091] gi|254667915|emb|CBA04080.1| fimbrial assembly protein; pilus secretin [Neisseria meningitidis alpha14] gi|254670030|emb|CBA04815.1| fimbrial assembly protein [Neisseria meningitidis alpha153] gi|261393150|emb|CAX50762.1| type IV pilus secretin PilQ [Neisseria meningitidis 8013] gi|304337694|gb|EFM03849.1| type IV pilus secretin PilQ [Neisseria meningitidis ATCC 13091] gi|325133588|gb|EGC56249.1| type IV pilus secretin PilQ [Neisseria meningitidis M13399] gi|325141680|gb|EGC64140.1| type IV pilus secretin PilQ [Neisseria meningitidis 961-5945] Length = 761 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553 Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 554 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 613 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + S + G +S T + L TP + G+I + ++ P Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673 Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 734 RGKKTDRRELLIFITPRIM 752 >gi|227327883|ref|ZP_03831907.1| general secretion pathway protein D [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 684 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 64/311 (20%), Positives = 119/311 (38%), Gaps = 36/311 (11%) Query: 146 VLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYAN----------SSSKKVMNLLNIAGED 194 VL G+ +IQ D Q A+ +S Q + ++V+ L+I Sbjct: 310 VLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP- 368 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKF 238 QV ++ IAEV+ +G Q + + + G Sbjct: 369 QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAA 428 Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 + G F+ + + ++ +L AL + + LA P++ + A+F G + Sbjct: 429 TTALGGFNGIAAGFYQGNWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLA 488 Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPS 350 +T S +V G+ L P + + L I+ EVS + + Sbjct: 489 GSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGAT 548 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + Sbjct: 549 FNTRTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNL 608 Query: 411 FIAATPFLVKP 421 + P +++ Sbjct: 609 MLFIRPSIIRD 619 >gi|161869408|ref|YP_001598575.1| type IV pilus assembly protein PilQ [Neisseria meningitidis 053442] gi|218767605|ref|YP_002342117.1| pilus secretin [Neisseria meningitidis Z2491] gi|62287129|sp|Q9JVW4|PILQ_NEIMA RecName: Full=Type IV pilus biogenesis and competence protein pilQ; Flags: Precursor gi|121051613|emb|CAM07913.1| pilus secretin [Neisseria meningitidis Z2491] gi|161594961|gb|ABX72621.1| type IV pilus assembly protein PilQ [Neisseria meningitidis 053442] gi|325129552|gb|EGC52376.1| type IV pilus secretin PilQ [Neisseria meningitidis OX99.30304] Length = 761 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553 Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 554 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 613 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + S + G +S T + L TP + G+I + ++ P Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673 Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 734 RGKKTDRRELLIFITPRIM 752 >gi|331005872|ref|ZP_08329224.1| Helix-turn-helix, AraC type [gamma proteobacterium IMCC1989] gi|330420316|gb|EGG94630.1| Helix-turn-helix, AraC type [gamma proteobacterium IMCC1989] Length = 659 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 57/258 (22%), Positives = 106/258 (41%), Gaps = 23/258 (8%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----------- 232 V+ L+I QV ++ I E+ D+ +++G + + ++G S + Sbjct: 349 VIKRLDIR-RAQVLVEAIIVEITNDLSRELGVEWAAYKQNNGFIGSRNSATLGTLATAIE 407 Query: 233 ---DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G G G + F +++ + + L+ P+L A + Sbjct: 408 SGDGIAGAPNFTGQGLGFFGNSNGVDFAGLINFFQGSAEANVLSTPSLLTTDNNEAEISI 467 Query: 290 GGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 G + T S +T + ++ D G+ L TP + + L IQ EVS Sbjct: 468 GQNVPFVTGSFTTSSGDSTDPFQTIEREDVGISLKVTPQINEGDTVNLEIQQEVSSISNS 527 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 A D+ + RK T V G TI+L GL+ ++++Q ++ +P L IP+LG LFRN Sbjct: 528 SQASDVIT-NERKISTKVIAQDGETIILGGLISNEVRQDEQKVPFLGDIPLLGGLFRNDS 586 Query: 403 FNREETEIFIAATPFLVK 420 + + + +++ Sbjct: 587 TTSSKQNLMVFLRATILR 604 >gi|308389910|gb|ADO32230.1| pilQ protein [Neisseria meningitidis alpha710] Length = 761 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553 Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 554 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 613 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + S + G +S T + L TP + G+I + ++ P Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673 Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 734 RGKKTDRRELLIFITPRIM 752 >gi|170022485|ref|YP_001718990.1| putative outer membrane porin HofQ [Yersinia pseudotuberculosis YPIII] gi|169749019|gb|ACA66537.1| type IV pilus secretin PilQ [Yersinia pseudotuberculosis YPIII] Length = 460 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + + L+++G + + G+++ F + + F V + Sbjct: 229 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 288 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + E+ + +A P L Q+AS G Y A ++ Sbjct: 289 GGRLLELELSAL-EQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 347 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P I + G+ M ++ T V + G TI Sbjct: 348 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 407 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + +Q +PLL+ IP+LGA+FR + E+ I TP L+ Sbjct: 408 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLI 458 >gi|325143815|gb|EGC66131.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240013] Length = 801 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 535 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 593 Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 594 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 653 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + S + G +S T + L TP + G+I + ++ P Sbjct: 654 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 713 Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 714 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 773 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 774 RGKKTDRRELLIFITPRIM 792 >gi|238792812|ref|ZP_04636443.1| General secretion pathway protein D [Yersinia intermedia ATCC 29909] gi|238727920|gb|EEQ19443.1| General secretion pathway protein D [Yersinia intermedia ATCC 29909] Length = 658 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 54/278 (19%), Positives = 109/278 (39%), Gaps = 17/278 (6%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVSE 241 V+ L++ QV ++ I E + +G Q +G + S + + Sbjct: 350 VIEKLDVR-RAQVLVEAIIVETQNGEGLNLGIQWENKFSGGVNFIPNSANTRNNSERMPP 408 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + + ++ + AL + LA P++ + A F G + T + + Sbjct: 409 MAIAGLTAGFYKGNWSGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLTSTQT 468 Query: 302 TGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVR 354 T S++ + GV+L P + + L I+ EVS +A + R Sbjct: 469 TSTDRVYNSISRKNVGVMLKVKPQINKGDSVLLEIRQEVSSIADSSDANANNLGSIFNKR 528 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + V + SG T+V+ GLL I ++ IP+L IP +G LFR + E++ + + Sbjct: 529 VVNNAVLVKSGETVVVGGLLDKKIYKIVNKIPILGDIPFIGGLFRQKKEKVEKSNLILFI 588 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 P +++ + D + + + +N+ + Sbjct: 589 KPTILRETS-------DYNLVTAEKYTEYNNGNINEKF 619 >gi|153833899|ref|ZP_01986566.1| general secretion pathway protein D [Vibrio harveyi HY01] gi|148869737|gb|EDL68714.1| general secretion pathway protein D [Vibrio harveyi HY01] Length = 681 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 65/376 (17%), Positives = 133/376 (35%), Gaps = 76/376 (20%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNI 190 VL G+ +Q ++A + + + A+ ++ V++ L+I Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA------------ 231 QV ++ I E+ +G Q I ++G S Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGNLETGAVIQYGNTGASIGGVMIGLEEAKDSER 399 Query: 232 -------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 D+ + G + + ++ A+ Sbjct: 400 TESTYDPQNPNANPDGYVERKFTEEGDYSTLAAALSGVNGAAMSIVMGDWTALISAVSSD 459 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPT 321 + L+ P++T + ASF G + T S++ +V + G+ L P Sbjct: 460 SNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQ 519 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + + Sbjct: 520 INEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALES 578 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 + +PLL IP++G LF+++ E+ + + P +++ D + Sbjct: 579 ESKVPLLGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIRDGMTADGIT----------QR 628 Query: 442 AFFFNRVNKIYGPKEA 457 + F R ++Y +E Sbjct: 629 KYNFIRAEQLYKAQEG 644 >gi|227824391|ref|ZP_03989223.1| type II and III secretion system protein [Acidaminococcus sp. D21] gi|226904890|gb|EEH90808.1| type II and III secretion system protein [Acidaminococcus sp. D21] Length = 424 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 15/250 (6%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 + + ++KV+ ++ + QVTL+ I ++ D +++G Q +G S+ Sbjct: 142 SPGDQARAQKVLARMD-RLQKQVTLEARILSLQEDASRELGLQWKWSGLPQQNSEE---- 196 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 ++GG F + G SF+ +L AL + + LA P + + G+ G Sbjct: 197 ------TDGGTFHL-GHGYTGSFQGILSALCQKGKAKVLATPRIVTVPGKEGKIFIGDHI 249 Query: 294 LYKT--VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 T VS+ T TS D G+ L +TP V G I + TEVS P + ++ Sbjct: 250 PVVTEKVSNGTTTTSTEYVDAGIRLSYTPIVGPDGVITASVHTEVSTPTL-ISELHNYRI 308 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R ADT V L G T+V+ GL+ D+ Q+ E IPLLSK+P+LG LF + TE+ Sbjct: 309 TSRTADTNVRLLEGETLVIGGLISDEEQKRLETIPLLSKLPLLGNLFTFRSRKKTRTEVV 368 Query: 412 IAATPFLVKP 421 + TP+L +P Sbjct: 369 MLLTPYLTEP 378 >gi|319409865|emb|CBY90178.1| type IV pilus secretin PilQ [Neisseria meningitidis WUE 2594] Length = 761 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553 Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 554 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 613 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + S + G +S T + L TP + G+I + ++ P Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673 Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 734 RGKKTDRRELLIFITPRIM 752 >gi|316984411|gb|EFV63384.1| type IV pilus secretin PilQ family protein [Neisseria meningitidis H44/76] gi|325200874|gb|ADY96329.1| type IV pilus secretin PilQ [Neisseria meningitidis H44/76] Length = 777 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 511 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 569 Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 570 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 629 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + S + G +S T + L TP + G+I + ++ P Sbjct: 630 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 689 Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 690 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 749 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 750 RGKKTDRRELLIFITPRIM 768 >gi|42186|emb|CAA49645.1| outD [Pectobacterium carotovorum] Length = 649 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 118/311 (37%), Gaps = 36/311 (11%) Query: 146 VLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYAN----------SSSKKVMNLLNIAGED 194 VL G+ +IQ D Q A+ +S Q + ++V+ L+I Sbjct: 275 VLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP- 333 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKF 238 QV ++ IAEV+ +G Q + + + G Sbjct: 334 QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAA 393 Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 + G F+ + + ++ ++ AL + LA P++ + A+F G + Sbjct: 394 TTALGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLA 453 Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPS 350 +T S +V G+ L P + + L I+ EVS + + Sbjct: 454 GSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLGAT 513 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + Sbjct: 514 FNTRTVNNAVLVSSGDTVVVGGLLDKSTNESANKVPLLGDIPVLGYLFRSNSTETKKRNL 573 Query: 411 FIAATPFLVKP 421 + P +++ Sbjct: 574 MLFIRPSIIRD 584 >gi|15678016|ref|NP_274809.1| pilQ protein [Neisseria meningitidis MC58] gi|62287061|sp|Q70M91|PILQ_NEIMB RecName: Full=Type IV pilus biogenesis and competence protein pilQ; Flags: Precursor gi|66731938|gb|AAY52170.1| pilQ protein [Neisseria meningitidis MC58] gi|325139633|gb|EGC62172.1| type IV pilus secretin PilQ [Neisseria meningitidis CU385] Length = 769 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 503 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 561 Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 562 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 621 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + S + G +S T + L TP + G+I + ++ P Sbjct: 622 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 681 Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 682 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 741 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 742 RGKKTDRRELLIFITPRIM 760 >gi|294666157|ref|ZP_06731413.1| general secretion pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604073|gb|EFF47468.1| general secretion pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 763 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 79/329 (24%), Positives = 132/329 (40%), Gaps = 46/329 (13%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + + +E+ D V + AV + T L +S + SS + V+ L++ Sbjct: 433 GNGAVTLEVAGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 479 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV ++ +AEV G + + S S FGG + ++ G + Sbjct: 480 -PMQVHIEAQVAEVNLTGALSYGVNWYFENAVNAASDSTTYGFGGAGLPSAAGRNIWGDI 538 Query: 252 DRF-------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ AL+ + +R L P++ + A+ G + + Sbjct: 539 AGRVTDGGVAWTFLGKNAAAIISALDTVSNVRLLQTPSVFVRNNAEATLNVGSRIPINST 598 Query: 299 SSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------- 342 S +TG +SV D GV+L P V G + L I E+S P Sbjct: 599 SINTGLGSDSSYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEISTPGARPAACTAETTT 658 Query: 343 --VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +A R+ T + SG T++LAGL+ D G+P LSK+PI+GALF Sbjct: 659 TVNSAACNVDINTRRVKTEAAVQSGDTMMLAGLIDDSTTDGSVGVPFLSKLPIVGALFGR 718 Query: 401 SRFNREETEIFIAATPFLVK-PVAMRDLS 428 N + E+ + TP +V+ P RDL+ Sbjct: 719 KTQNTDRREVIVLITPSIVRNPKESRDLT 747 >gi|145597400|ref|YP_001161475.1| putative outer membrane porin HofQ [Yersinia pestis Pestoides F] gi|165928024|ref|ZP_02223856.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. F1991016] gi|166010419|ref|ZP_02231317.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. E1979001] gi|108781223|gb|ABG15281.1| putative membrane transport protein [Yersinia pestis Antiqua] gi|145209096|gb|ABP38503.1| membrane transport protein [Yersinia pestis Pestoides F] gi|165919973|gb|EDR37274.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str. F1991016] gi|165990509|gb|EDR42810.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str. E1979001] Length = 450 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + + L+++G + + G+++ F + + F V + Sbjct: 219 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 278 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + LE+ + +A P L Q+AS G Y A ++ Sbjct: 279 GGRLLELELSA-LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 337 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P I + G+ M ++ T V + G TI Sbjct: 338 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 397 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + +Q +PLL+ IP+LGA+FR + E+ I TP L+ Sbjct: 398 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLI 448 >gi|37678398|ref|NP_933007.1| type II secretory pathway, component EpsD [Vibrio vulnificus YJ016] gi|37197137|dbj|BAC92978.1| type II secretory pathway, component EpsD [Vibrio vulnificus YJ016] Length = 672 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 45/290 (15%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGP------ 226 + + V+ L+I QV ++ I E+ +G Q I S++G Sbjct: 329 ALQDVITQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVM 387 Query: 227 -------------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + + D+ + G L + ++ Sbjct: 388 VGLEEAKDQTKTEYYTNKDGDRVPYQVTESGDYSTLAAALAGVNGAAMSLVMGDWTALIS 447 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVL 316 A+ + L+ P++T + ASF G + T S++ +V + G+ L Sbjct: 448 AVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKL 507 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + Sbjct: 508 KVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDE 566 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + +PLL IPILG LF+++ E+ + + P +++ D Sbjct: 567 RALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTAD 616 >gi|332535166|ref|ZP_08410973.1| type II secretion outer membrane pore forming protein PulD [Pseudoalteromonas haloplanktis ANT/505] gi|332035385|gb|EGI71885.1| type II secretion outer membrane pore forming protein PulD [Pseudoalteromonas haloplanktis ANT/505] Length = 687 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 69/286 (24%), Positives = 113/286 (39%), Gaps = 47/286 (16%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------- 217 S + V+ L+I QV ++ I EV +G Q Sbjct: 339 SLESVIERLDIR-RAQVLVEAIIIEVMEGDGVNLGLQWISEQGGMLQFNNGTTVPVGSLA 397 Query: 218 -------------SITGSSSGPSKSFA----ADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +I G+ SG + D+G G + + + + ++ Sbjct: 398 VAAEQAQDVTVTKNIIGTESGTVTPYTETTEGDYGPLASLLSGINGLALGVVKNDWGAII 457 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315 A+ T LA P++T + + AS G + T S + +V + G+ Sbjct: 458 QAVATDTNSNILATPSITTMDNEEASILVGQEVPIITGSQTGSNNANPFQTVERQEVGIK 517 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + + L I+ EVS V G A D+ S R TTV GG +VL GL+ Sbjct: 518 LIVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRAIKTTVMADDGGMVVLGGLID 575 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +D+Q+ +PLL IPILG LFR++ R + + + P +++ Sbjct: 576 EDVQESVSKVPLLGDIPILGHLFRSTNTTRRKRNLIVFIRPTIIRD 621 >gi|158521058|ref|YP_001528928.1| general secretion pathway protein D [Desulfococcus oleovorans Hxd3] gi|158509884|gb|ABW66851.1| general secretion pathway protein D [Desulfococcus oleovorans Hxd3] Length = 799 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 72/358 (20%), Positives = 140/358 (39%), Gaps = 37/358 (10%) Query: 99 VILIG---HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 + L+ GK+ +++ L D L L + + + + V + Sbjct: 314 ITLLDKKVQQGKERIHVYYLKNADAEELAKVL-QMLPEKQGDATAEGKKLA---PVLSKA 369 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 + A + + + + R+ Y K+++ L+I V ++ IAEV + ++G Sbjct: 370 INITADASTNSLIIMAERDDYL--VLKEIIEKLDIP-RSMVYIECLIAEVNINKDFELGA 426 Query: 216 QH----------------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 + S TG ++ + G V + V G ++ Sbjct: 427 EWLVGGKGSYDDKDGGYAVGFGGGSDTGYANVARMAMGGLPSGFSVGAMAESIVVGGIEY 486 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309 + V+ A ++ ++ L+ P + Q A+ T G Y T SS ++ Sbjct: 487 PNLAAVVRAFKKDKDVQILSTPQIMTTDNQEATITVGKNIPYLTKIGTTSSEETYSNYEY 546 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 D G+ L P + I L I+ E+++ + + D P+ R T V + TI Sbjct: 547 KDVGISLKIKPQINENRLIRLDIEQELTKLDQLTTVSLDRPATLKRGITTNVIVHDEHTI 606 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 V+ GL+ D + +++ +P L IP LG LF+ + E+T + + TP ++K D Sbjct: 607 VIGGLIDDSMSRVEYKVPCLGDIPFLGWLFKGLSRSSEKTNLLVFLTPHVIKTAREAD 664 >gi|212217864|ref|YP_002304651.1| type 4 pili secretin (outer membrane porin) [Coxiella burnetii CbuK_Q154] gi|212012126|gb|ACJ19506.1| type 4 pili secretin (outer membrane porin) [Coxiella burnetii CbuK_Q154] Length = 353 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 122/275 (44%), Gaps = 7/275 (2%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G++ + V ++ ++ + + Y S +++ L+I QV +K I + Sbjct: 63 SGILSKFGYAAADVRTNQLWILEEQTHIYLIQS---LVSQLDIPI-HQVLIKARIISISD 118 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERA 266 L +G +++ + D + G D + + + L ALE+ Sbjct: 119 HNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQFGVADIPIIKFKNGQLLDLTLSALEQE 178 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + L+ P L + Q+A SG Y+ + G TSVT + + L TP VL Sbjct: 179 GRAQVLSCPELMTNNRQTAIIESGEAIPYQEKTGQ-GNTSVTFNKATLRLKVTPVVLPGN 237 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 RI L++ + + +P+ + ++ T V + + T+VL G+ + QQ + GIP Sbjct: 238 RILLQLNVNQDK-MSSFLVNGVPTIQTQQLTTKVMVNNQETVVLGGIYEQSTQQEEAGIP 296 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L KIPILG LFR+ + + E ++ I TP ++ P Sbjct: 297 GLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISP 331 >gi|222053997|ref|YP_002536359.1| general secretion pathway protein D [Geobacter sp. FRC-32] gi|221563286|gb|ACM19258.1| general secretion pathway protein D [Geobacter sp. FRC-32] Length = 637 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 70/259 (27%), Positives = 111/259 (42%), Gaps = 19/259 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--DFGGKFVS 240 +V+ L+ QV ++ IAEV D +++G Q + G +S + + A D G F + Sbjct: 345 QVIQKLDRRN-RQVFVQAMIAEVSIDRARELGVQWGVIGGASNGTVATAGIYDPFGTFGA 403 Query: 241 ----------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G S + +F +L AL+ A+ L+ P + + A G Sbjct: 404 LAPIIKSLGEAGIGTSSLNLAGAATFPAILKALQSNGALNVLSTPNIMTSDNKEAEIFVG 463 Query: 291 GQHLYKTVS--SSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + T S SSTG + D G+ L P V + L I E+S +N G Sbjct: 464 ENVPFLTQSNLSSTGLAQQGIERKDTGITLKIKPMVSEGEYVKLDIYQEISAVKDALNKG 523 Query: 347 DMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 R A T+V + T+V+ GL++D Q+ IP L IP+LG LF+ Sbjct: 524 AAVDITTTKRSAKTSVVVKDTDTVVIGGLIQDQDQETINKIPFLGDIPLLGYLFKTKSMK 583 Query: 405 REETEIFIAATPFLVKPVA 423 R +T + I TP+++K Sbjct: 584 RTKTNLMIILTPYIIKDSV 602 >gi|77164279|ref|YP_342804.1| general secretion pathway protein D [Nitrosococcus oceani ATCC 19707] gi|254435433|ref|ZP_05048940.1| general secretion pathway protein D [Nitrosococcus oceani AFC27] gi|76882593|gb|ABA57274.1| General secretion pathway protein D [Nitrosococcus oceani ATCC 19707] gi|207088544|gb|EDZ65816.1| general secretion pathway protein D [Nitrosococcus oceani AFC27] Length = 833 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 63/271 (23%), Positives = 110/271 (40%), Gaps = 24/271 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ TIAEV Q G + ++G + F+ Sbjct: 532 PRQVLVEATIAEVTLTDDLQYGVRWFF--ENTGVKDYLGRGALTAAIPGTSTFTYGLFDA 589 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVT 308 + VL L T ++ L+ P L + Q+A G Q +T S+ T + Sbjct: 590 AGAARIVLDTLSSQTKVKVLSSPQLLVLDNQTAEIRVGDQIPIQTGSTIGIGGNSTTRIQ 649 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------------------IGVNAGDMPS 350 D GV+L TP V + GR+ + + EV++ G+ P+ Sbjct: 650 FRDTGVLLTVTPRVNAGGRVTMELTQEVTDVGGTKLPTSAAPSGDGDDDNNNQTVGNNPT 709 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG TIVL GL++D+ + G+P L K+P++G LF + ++ TE+ Sbjct: 710 FLQRSFRSVVTVQSGDTIVLGGLIRDNERFSDSGLPFLHKLPLIGPLFGATAKSKSRTEL 769 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 + TP +V+ L + + + + Sbjct: 770 IVLMTPRVVRNQYEARLVTEEFREKLRNASD 800 >gi|257464993|ref|ZP_05629364.1| type II secretory pathway, component HofQ [Actinobacillus minor 202] gi|257450653|gb|EEV24696.1| type II secretory pathway, component HofQ [Actinobacillus minor 202] Length = 442 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 61/338 (18%), Positives = 133/338 (39%), Gaps = 22/338 (6%) Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167 + +I++E+ + T++ A ++ ++ ++ +G V + E S + Sbjct: 102 PVKTAEIVVEKKPIIVTKTIKLQYAKASEVIDSLTKG---NGSVLSDAGYIHFDERSNSL 158 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------- 218 + + + N S ++ L+ E Q+ ++ I + + L ++G + Sbjct: 159 IIKDNPSSIKNMVS--LIKELDKPTE-QIAIEARIVTISSENLHELGVRWGMLSPNTSHS 215 Query: 219 -ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--LDRFSFETVLHALERATAIRTLAEP 275 + G+ G + F GG +V V ++ + L ALE+ ++ +A P Sbjct: 216 RLGGTLEGNGVDSTKNLNVNFPVSGGASAVLQVASINSKVLDLELSALEQENSVEIIASP 275 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L + + AS G + Y + V + + L TP + +I + + Sbjct: 276 RLLTTNKKLASIKQGTEIPYAIYDRKSETYDVEFKEAVLGLQVTPHISKDNQILMDLVVT 335 Query: 336 VSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + V + S ++ +T V G TIVL G+ + + + +P+L I Sbjct: 336 QNSQGQSVVSSTSGNAAVSIDKQELNTQVFAKHGETIVLGGIFQHLKTKDSDRVPVLGSI 395 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 P L LF + + E+ I TP++++ + L + Sbjct: 396 PFLKHLFSYQKDQISKRELVIFVTPYIIQANDINALPQ 433 >gi|241664633|ref|YP_002982993.1| general secretion pathway protein D [Ralstonia pickettii 12D] gi|240866660|gb|ACS64321.1| general secretion pathway protein D [Ralstonia pickettii 12D] Length = 803 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 76/303 (25%), Positives = 122/303 (40%), Gaps = 42/303 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------------------------ 217 + V++ L+ A QV ++ I EV Q+G Q Sbjct: 420 RAVIDDLD-ARRAQVYIESMIVEVTATKASQLGIQWMVGAGGPNTYGGGGTNFGTGSGNL 478 Query: 218 -----SITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFS-FETVLHALERATAIR 270 +I ++G S AA V+ G + GV ++ S +L AL ++ Sbjct: 479 LTLAGTIATITTGGIGSTAAQTALSSVNVGQLNGGQFGVFNKASGLGALLSALGSDGSVN 538 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTV 322 L+ P L + + A G T S + T + D G+ L P + Sbjct: 539 VLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGTSASVTPFQTFDRKDVGITLRVKPQI 598 Query: 323 LSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 G + ++I E S V G NA P+ VR +T V G +VL GLL+D+ Q Sbjct: 599 TDGGLVKMQIFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQDG 658 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 ++ +P L IPILGALFR+ R +T + + P +++ A + D+ Y+ D + Sbjct: 659 EQKVPGLGDIPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGALSDNRYNYMRDTQ 717 Query: 442 AFF 444 F Sbjct: 718 QGF 720 >gi|260773652|ref|ZP_05882568.1| type II secretory pathway component PulD [Vibrio metschnikovii CIP 69.14] gi|260612791|gb|EEX37994.1| type II secretory pathway component PulD [Vibrio metschnikovii CIP 69.14] Length = 536 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 71/325 (21%), Positives = 123/325 (37%), Gaps = 35/325 (10%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 ++E ++ G +++ + +A ++ R ++ +++ ++ + QV Sbjct: 208 QLESTIGRLIGSGSGQSVMVTPQASVITVRAYPDEIRE------VRQFLDMSHLRIQRQV 261 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL----- 251 L+ I EV + Q G S T SS+G VS G L Sbjct: 262 ILEAKILEVTLNDGFQQGINWSKTFSSNGNDYQLGQGVISNPVSSLPGMDAIGTLLGGQT 321 Query: 252 ----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305 SF+ VL + + L+ P +TA + Q A G Y T +S T Sbjct: 322 NLVVKSGSFDAVLSFMSTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTDLTSEVGTGD 381 Query: 306 --------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSY--- 351 +T G+ L TP + G + L + EV E V D Sbjct: 382 NANVAPNIQLTPFFSGISLDVTPQIDDDGYVFLHVHPSVIEVEEQKKSVQFNDRIITLPL 441 Query: 352 ---RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 +R++D+ + G +V+ GL+K + +P IP+LG LFR + ++T Sbjct: 442 ARSSIRESDSVIRAQDGDVVVIGGLMKSNTMNQTSKVPFFGDIPLLGHLFRQTSNVTQKT 501 Query: 409 EIFIAATPFLVK-PVAMRDLSRPDD 432 E+ I P +V ++L R D Sbjct: 502 ELVILLKPTVVGVNTWQKELERSRD 526 >gi|309780546|ref|ZP_07675293.1| general secretion pathway protein D [Ralstonia sp. 5_7_47FAA] gi|308920701|gb|EFP66351.1| general secretion pathway protein D [Ralstonia sp. 5_7_47FAA] Length = 805 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 76/303 (25%), Positives = 122/303 (40%), Gaps = 42/303 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------------------------ 217 + V++ L+ A QV ++ I EV Q+G Q Sbjct: 422 RAVIDDLD-ARRAQVYIESMIVEVTATKASQLGIQWMVGAGGPNTYGGGGTNFGTGSGNL 480 Query: 218 -----SITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFS-FETVLHALERATAIR 270 +I ++G S AA V+ G + GV ++ S +L AL ++ Sbjct: 481 LTLAGTIATITTGGIGSTAAQTALSSVNVGQLNGGQFGVFNKASGLGALLSALGSDGSVN 540 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTV 322 L+ P L + + A G T S + T + D G+ L P + Sbjct: 541 VLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGTSASVTPFQTFDRKDVGITLRVKPQI 600 Query: 323 LSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 G + ++I E S V G NA P+ VR +T V G +VL GLL+D+ Q Sbjct: 601 TDGGLVKMQIFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQDG 660 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 ++ +P L IPILGALFR+ R +T + + P +++ A + D+ Y+ D + Sbjct: 661 EQKVPGLGDIPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGALSDNRYNYMRDTQ 719 Query: 442 AFF 444 F Sbjct: 720 QGF 722 >gi|256823530|ref|YP_003147493.1| general secretion pathway protein D [Kangiella koreensis DSM 16069] gi|256797069|gb|ACV27725.1| general secretion pathway protein D [Kangiella koreensis DSM 16069] Length = 708 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 78/323 (24%), Positives = 123/323 (38%), Gaps = 61/323 (18%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 V+ L+I QV ++ I E+ + K++G Q + S + +F Sbjct: 350 DSVIRALDIR-RKQVHVEAIIVEISDNKAKELGIQWLFSPEGSNTTPGGVVNFTNTGPGI 408 Query: 242 G----GDFSVKGV----------------------------------------------- 250 G G S +G Sbjct: 409 GQVAAGAISARGTEEEVFTRDPETGEITGTETRRVGGDNGAALAEVLGGMQGLGLGVAKI 468 Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGA 304 D FS+ + ALE T TL+ P++T + A F SG + T S+ S Sbjct: 469 RPDGFSWGAFIRALEGVTDSNTLSRPSVTTLDNVEAIFKSGQEIPIITGSTLGDNNSNPF 528 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 +V D GV+L TP + + L I+ EVS N + R+ T+V +P Sbjct: 529 QNVERKDVGVMLKLTPQINEGNYVRLDIEQEVSSIAGSTNVDVV--TNKREVKTSVLVPD 586 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA- 423 GG +VL GL+ DDIQQ + +P+L IP+LG F++ R + + + I P ++K A Sbjct: 587 GGMVVLGGLIDDDIQQSSQKVPILGDIPVLGHAFKSQRTQKIKRNLMIFIHPTVLKDDAE 646 Query: 424 MRDLSRPDDHYSVEDDAKAFFFN 446 +R+LS Y + Sbjct: 647 LRELSSAKYSYIRAQQIEQANRG 669 >gi|197336466|ref|YP_002157259.1| general secretion pathway protein D [Vibrio fischeri MJ11] gi|197317956|gb|ACH67403.1| general secretion pathway protein D [Vibrio fischeri MJ11] Length = 678 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 63/291 (21%), Positives = 116/291 (39%), Gaps = 46/291 (15%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----------SITGSSSG--- 225 + K V+ L+I QV ++ I E+ +G Q S TG+S G Sbjct: 329 AMKDVIAQLDIR-RAQVLIEALIVELAEGDGVNLGVQWGNLETGAMIQYSNTGASIGATM 387 Query: 226 ---------PSKSFAADFGGKFV----------------SEGGDFSVKGVLDRFSFETVL 260 + + D GKFV + GG + + ++ Sbjct: 388 VGLEEAKDTTTTTAVYDENGKFVRNETTTEEGSYDALAGALGGVQGAAVSIMMGDWAALV 447 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315 A+ + L+ P++T + ASF G + T S++ + +V + G+ Sbjct: 448 TAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSSNDNPFQTVDRKEVGIK 507 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L P + + L I+ EVS V+G N + R+ +T+V + G +VL GL+ Sbjct: 508 LKVVPQINEGDSVRLDIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLID 566 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + + +P L IP+LG LF+++ E+ + + P +++ D Sbjct: 567 ERALESESKVPFLGDIPVLGYLFKSTSTQVEKKNLMVFIKPTIIRNGMTAD 617 >gi|325926645|ref|ZP_08187959.1| general secretion pathway protein D [Xanthomonas perforans 91-118] gi|325542997|gb|EGD14446.1| general secretion pathway protein D [Xanthomonas perforans 91-118] Length = 763 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 80/329 (24%), Positives = 133/329 (40%), Gaps = 46/329 (13%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + + +E+ D V + AV + T L +S + SS + V+ L++ Sbjct: 429 GNGAVTLEVAGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 475 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV ++ +AEV G + + S S FGG + ++ G + Sbjct: 476 -PMQVHIEAQVAEVNLTGALSYGVNWYFENAVNAASDSTTYGFGGAGLPSAAGRNIWGDI 534 Query: 252 DRF--------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + ++ AL++ T +R L P++ + A+ G + + Sbjct: 535 AGKVTGTEGLAWSFLGKNAAAIITALDKVTNVRLLQTPSVFVRNNAEATLNVGSRIAINS 594 Query: 298 VSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VI 341 S +TG +SV D GV+L P V G + L I EVS P Sbjct: 595 TSINTGIGTDTSYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSPGDRPAACTSATA 654 Query: 342 GVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +NA R+ T + SG TI+LAGL+ D +G+P LSK+P++GALF Sbjct: 655 TINAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDTSDGVPFLSKLPVVGALFGT 714 Query: 401 SRFNREETEIFIAATPFLVK-PVAMRDLS 428 E+ + TP +V+ P R+L+ Sbjct: 715 KGKTSNRREVIVLITPSIVRNPQEARNLT 743 >gi|261856527|ref|YP_003263810.1| type IV pilus secretin PilQ [Halothiobacillus neapolitanus c2] gi|261836996|gb|ACX96763.1| type IV pilus secretin PilQ [Halothiobacillus neapolitanus c2] Length = 729 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 92/261 (35%), Gaps = 35/261 (13%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------- 242 QV ++ I + +Q+G + + + + +F V+ G Sbjct: 459 KQVLIETRIVIATDNFARQLGVRWGVQAGFNRGNSTFGLGSTAPLVASGTSLPTAGASTG 518 Query: 243 --------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G + + + L AL+ ++ P + +G Sbjct: 519 TVGTAPTDWMVNTPISGTPAGSLGLAILGSNVLLDLELSALQSEGTGEIVSSPKVITTNG 578 Query: 283 QSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 +A + G + Y ++ G + +V+ + TP + I + I + EP Sbjct: 579 HTALISQGTEIPYIATQTAGGVASNTVSFKKAVLSTEVTPQITPNNNIIMDIDVKKDEPD 638 Query: 341 IG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + P R+ T VE+ +G T+VL G+ + + +P +P +G LF Sbjct: 639 YTNLLPGTTNPPINTREVKTKVEVKNGETVVLGGIYQFENNNSINKVPFFGDLPGIGNLF 698 Query: 399 RNSRFNREETEIFIAATPFLV 419 +N + E+ I TP ++ Sbjct: 699 KNKEVKNQRLELLIFVTPKII 719 >gi|34496284|ref|NP_900499.1| type 4 fimbrial biogenesis protein PilQ [Chromobacterium violaceum ATCC 12472] gi|34102137|gb|AAQ58504.1| type 4 fimbrial biogenesis protein PilQ [Chromobacterium violaceum ATCC 12472] Length = 697 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 27/269 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------ITGSSSGPS----- 227 + V+ +I QV ++ I E + + +G + + I+G+ G + Sbjct: 429 RDVITKTDIP-VKQVLIEARIVEATDNWERDLGIKLTYDRMDPKGIISGNPLGTNVNNVT 487 Query: 228 ----------KSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPT 276 ++ A + G S V L A++ R ++ P Sbjct: 488 NLNNNQPYVIQTTPAGVNLPIATPYGTLSALYNVGHSVILGLELQAMQAEDKGRIISSPR 547 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + Q AS G + Y+ SSS GATSV+ + L+ P + + + I Sbjct: 548 VMTADRQEASIEQGTEIPYQEASSS-GATSVSFKKAVLRLNVKPQITPDNHVIMDITVNK 606 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 PS K T V + +GGT+VL G+ + + + +P L IP+LGA Sbjct: 607 DSANFEKTVNGTPSLSTEKIITQVLVENGGTVVLGGIYQQQLNDVINKVPFLGDIPLLGA 666 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMR 425 LFR+S+ + +E+ I TP ++ + Sbjct: 667 LFRSSQKIDKRSELLIFITPKVINDLVAE 695 >gi|323497014|ref|ZP_08102037.1| general secretion pathway protein D [Vibrio sinaloensis DSM 21326] gi|323317858|gb|EGA70846.1| general secretion pathway protein D [Vibrio sinaloensis DSM 21326] Length = 675 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 123/338 (36%), Gaps = 58/338 (17%) Query: 146 VLHGMVRTIQDSQR-------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED---- 194 VL G+ +Q + A + N ++ +MN L Sbjct: 283 VLKGVSDNLQAEKSSGKKGTSAKRGEVMIAAHPDTNALVLTAPPDIMNALQDVIAQLDIR 342 Query: 195 --QVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADF---------- 234 QV ++ I E+ +G Q G++ P Sbjct: 343 RAQVLIEALIVEMAEGDGINLGVQWGSLETGAMIQYGNTGAPIGQVMVGLEEAKDTETTK 402 Query: 235 -----GGKFV-----SEGGDFSVKGVLDR-----------FSFETVLHALERATAIRTLA 273 G+FV +E GDF+ + ++ A+ + L+ Sbjct: 403 AVYDSDGEFVRNETTTEKGDFTTLAAALSSVNGAALSVVMGDWTALISAVSTDSNSNILS 462 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRI 328 P++T + ASF G + T S++ +V + G+ L P + + Sbjct: 463 SPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSV 522 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L+I+ EVS V+G N + R+ +T+V + G IVL GL+ + + + +PLL Sbjct: 523 QLKIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVEDGQMIVLGGLIDERALESESKVPLL 581 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IP+LG LF+++ E+ + + P +++ D Sbjct: 582 GDIPVLGHLFKSTNTQVEKKNLMVFIKPTIIRDGVTAD 619 >gi|312882862|ref|ZP_07742594.1| general secretion pathway protein D [Vibrio caribbenthicus ATCC BAA-2122] gi|309369381|gb|EFP96901.1| general secretion pathway protein D [Vibrio caribbenthicus ATCC BAA-2122] Length = 674 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 62/325 (19%), Positives = 122/325 (37%), Gaps = 48/325 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQS---GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 G +T + V ++ + + + + V+ L+I QV ++ I E Sbjct: 296 SGTKKTQGSKRGDVVIAAHVETNALVLTAPPDIMIALQDVIAQLDIR-RAQVLIEALIVE 354 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-------------------------- 238 + +G Q S + + + G+ Sbjct: 355 MAEGDGINLGVQWGSLESGASIQFANSGTPIGQVMVGVEEAKEQTSTEYYTDKDGNRQPY 414 Query: 239 -VSEGGDFSVKGVLDR-----------FSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 V++ GD+S + ++ A+ + L+ P++T + AS Sbjct: 415 NVTKPGDYSTLASALGSVNGAALSVVMGDWMALISAVSTDSNSNILSSPSITVMDNGEAS 474 Query: 287 FTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 F G + T S++ +V + G+ L P + + L+I+ EVS V+ Sbjct: 475 FIVGEEVPVITGSAAGSNNENPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSN-VL 533 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G N + R+ +T+V + G IVL GL+ + + + +PLL IP LG LF+++ Sbjct: 534 GANGAVDVRFAKRQLNTSVMVEDGQMIVLGGLIDERALESESKVPLLGDIPYLGHLFKST 593 Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426 R E+ + + P +++ D Sbjct: 594 RTQVEKKNLMVFIKPTIIRDGVTAD 618 >gi|239907473|ref|YP_002954214.1| general secretion pathway protein D precursor [Desulfovibrio magneticus RS-1] gi|239797339|dbj|BAH76328.1| general secretion pathway protein D precursor [Desulfovibrio magneticus RS-1] Length = 685 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 62/293 (21%), Positives = 105/293 (35%), Gaps = 33/293 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228 +V+ L+ A QV ++ I EV D G ++ SG Sbjct: 372 DQVVKKLD-APRKQVYVEALIMEVSTDKSVSFGVNLNVANKQSGLGDGKYGGLLFASSNP 430 Query: 229 ----SFAADFGGKFVSEGGDFSVK------GVLDRFSFETVLHALERATAIRTLAEPTLT 278 S G GG G + + + +++A + + +A P L Sbjct: 431 AGYESLYNSSGAFVPPAGGSLGGLAFPVKIGEVIYSNLQAMINASKSDNSFNIIATPQLM 490 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + A+ T Y T +T+ D G L TP + I L++ Sbjct: 491 TLDNEEATITVAENRPYLTSQDVGQSTTDRPYQRFDYKDVGTTLKVTPQINEGDSIKLKV 550 Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + E S V P+ R R +TT+ +G TIVL+GL+ + +P L Sbjct: 551 KQETSRIDETVTKETGALQPTTRKRVTETTIMCRNGETIVLSGLIGKSRAEGNSKVPGLG 610 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +P++G LF+N E T +++ TP + P D +E + Sbjct: 611 DVPVVGWLFKNKSVADERTNLYVFITPRITAPGVDSDRLLHAKKMEIERQIEF 663 >gi|224368244|ref|YP_002602407.1| GspD1 [Desulfobacterium autotrophicum HRM2] gi|223690960|gb|ACN14243.1| GspD1 [Desulfobacterium autotrophicum HRM2] Length = 653 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 70/310 (22%), Positives = 122/310 (39%), Gaps = 33/310 (10%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 I D + + T + ++V++ L+I V ++ I EV + Sbjct: 318 TAPVISDMVKIMADKATNSLIIMAEKEDYPVLEEVIHKLDIP-RAMVYIECLIMEVNVES 376 Query: 210 LKQIGFQHSIT--------------------GSSSGPSKSFAADFGGKFVSEG--GDFSV 247 ++G Q I GS G S AA G S G G Sbjct: 377 GFELGTQWQIGDGYDTDSDGNDQGVYFGSFKGSDGGSFTSAAAGGLGSGFSAGIMGKSIT 436 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 G + + V+ A + L+ P + + A+ T G Y+T SS T++ Sbjct: 437 IGGVSFPTLGAVIQAYQSDKDSHILSTPQILTTDNEEATLTIGKNVPYQTRSSVDNDTTL 496 Query: 308 T--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADT 358 T D G+ L TP + + L + E+++ + D P+ RK +T Sbjct: 497 TTSSYNSYEYKDVGITLKITPQISKDRLVRLNVYQEITKLDSSASQSTDRPTTLKRKIET 556 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 T+ + G T+V+ GL+ + + + +P L IP L LF+ + E+T +++ TP + Sbjct: 557 TLIVEDGNTVVIGGLIDETLSSSEYKVPCLGDIPGLSYLFKTTSTGDEKTNLYVFLTPRV 616 Query: 419 VK-PVAMRDL 427 VK P+ +L Sbjct: 617 VKNPLEASEL 626 >gi|307731499|ref|YP_003908723.1| general secretion pathway protein D [Burkholderia sp. CCGE1003] gi|307586034|gb|ADN59432.1| general secretion pathway protein D [Burkholderia sp. CCGE1003] Length = 782 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 66/313 (21%), Positives = 113/313 (36%), Gaps = 53/313 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ A QV ++ I E+ + +G Q + +S + A ++ Sbjct: 395 RAVIDQLD-ARRAQVYIEALIVELNSNTSGNLGIQWQVANNSIFAGTNLATGQSNSIINL 453 Query: 242 GGDFS-------------------------VKGVLDRFSFETVLHALERATAIRTLAEPT 276 + + +L AL + L+ P Sbjct: 454 TTGAVAAGATGGLASAIATQGVQQGLNIGWIHNIFGVQGLGALLQALSQTADANVLSTPN 513 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRI 328 L + + A G +T S S + D G+ LH P + G + Sbjct: 514 LITLDNEEAKIVVGTNIPIQTGSYSNLTSGTASSAFNTYDRVDVGLTLHVKPQITDGGIL 573 Query: 329 GLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L++ TE S V G P + R +TV +G IVL GL++D+ Q Sbjct: 574 KLQLYTEDSAIVNGTTNATTNPAGPQFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSK 633 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +PLL IP +G LFR+ + NR +T + + P ++ D A+A Sbjct: 634 VPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVIIND---------------RDTAQAVT 678 Query: 445 FNRVNKIYGPKEA 457 NR + I G + + Sbjct: 679 SNRYDYIQGVQGS 691 >gi|187925905|ref|YP_001897547.1| general secretion pathway protein D [Burkholderia phytofirmans PsJN] gi|187717099|gb|ACD18323.1| general secretion pathway protein D [Burkholderia phytofirmans PsJN] Length = 791 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 112/313 (35%), Gaps = 53/313 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ A QV L+ I E+ + +G Q + +S + V+ Sbjct: 400 RAVIDQLD-ARRAQVYLEALIVELNSNTSGNLGIQWQVANNSIFAGTNLQTGSSNSIVNL 458 Query: 242 GGDFSVKG-------------------------VLDRFSFETVLHALERATAIRTLAEPT 276 G + +L AL + L+ P Sbjct: 459 TAAAVAAGSTGGLAGALGNGTLQQGLNIGWIHNIFGVQGLGALLQALSQTADANVLSTPN 518 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRI 328 L + + A G +T S S + D G+ LH P + G + Sbjct: 519 LITLDNEEAKIVVGTNVPIQTGSYSNLTSATATSAFNTYDRVDVGLTLHVKPQITDGGIL 578 Query: 329 GLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 L++ TE S V G N P + R +TV +G IVL GL++D+ Q Sbjct: 579 KLQLYTEDSAIVTGTNNAATNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSK 638 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +PLL IP +G LFR+ + R +T + + P ++ S A+A Sbjct: 639 VPLLGDIPWIGQLFRSEQKTRNKTNLMVFLRPVII---------------SDRGTAQAVT 683 Query: 445 FNRVNKIYGPKEA 457 NR + I G + A Sbjct: 684 SNRYDYIQGVQGA 696 >gi|170694279|ref|ZP_02885433.1| general secretion pathway protein D [Burkholderia graminis C4D1M] gi|170140702|gb|EDT08876.1| general secretion pathway protein D [Burkholderia graminis C4D1M] Length = 781 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 116/315 (36%), Gaps = 55/315 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ A QV ++ I E+ + +G Q + +S + A ++ Sbjct: 398 RAVIDQLD-ARRAQVYIEALIVELNSNTSGNLGIQWQVANNSIFAGTNLATGSSNSIINL 456 Query: 242 GG------------------------DFSVKGVLDRFS---FETVLHALERATAIRTLAE 274 +V + + F +L AL + L+ Sbjct: 457 TAAAAAAGAAGATGGLANALGSGVQQGLNVGWIHNMFGVQGLGALLQALSQTADANVLST 516 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPG 326 P L + + A G +T S S + D G+ LH P + G Sbjct: 517 PNLITLDNEEAKIVVGTNIPIQTGSYSNLTSGNASSAFNTYDRVDVGLTLHVKPQITDGG 576 Query: 327 RIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + L++ TE S V G P + R +TV +G IVL GL++D+ Q Sbjct: 577 ILKLQLYTEDSAIVNGTTNATTNPAGPQFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSN 636 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +PLL IP +G LFR+ + NR +T + + P ++ D A+A Sbjct: 637 SKVPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVII---------------GDRDTAQA 681 Query: 443 FFFNRVNKIYGPKEA 457 NR + I G + A Sbjct: 682 VTSNRYDYIQGVQGA 696 >gi|260774763|ref|ZP_05883666.1| general secretion pathway protein D precursor [Vibrio coralliilyticus ATCC BAA-450] gi|260609325|gb|EEX35477.1| general secretion pathway protein D precursor [Vibrio coralliilyticus ATCC BAA-450] Length = 676 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 68/377 (18%), Positives = 130/377 (34%), Gaps = 72/377 (19%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--------------VVLHGMVRTIQDSQRAVELSETF 167 + LR+ I +I + + VL G+ +Q + + + Sbjct: 244 QVRQRLRKLIKQLDIEMATKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKSSGSKQSSS 303 Query: 168 LSQS--------GRNQYANSSSKKVMNLLNIAGED------QVTLKVTIAEVRRDILKQI 213 + G N ++ +MN L QV ++ I E+ + Sbjct: 304 AKRGEVMISAHPGTNALVLTAPPDIMNALQDVISQLDIRRAQVLIEALIVEMTEGDGINL 363 Query: 214 GFQHSITGSSSGPSKSFAADFGGKF---------------------------VSEGGDFS 246 G Q + + A G V+E GD+S Sbjct: 364 GVQWGSLETGAVIQYGNAGTKIGNVMVGLEEAEDQKSTEYYTNSAGERVPYDVTEPGDYS 423 Query: 247 VKGVLDRF-----------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + ++ A+ T L+ P++T + ASF G + Sbjct: 424 TLASALSGVNGAALSVVMGDWTALISAVSSDTNSNILSSPSITVMDNGEASFIVGEEVPV 483 Query: 296 KTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-P 349 T S + +V + G+ L P + + L I+ EVS + + + Sbjct: 484 ITGSAAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLTIEQEVSNVLPATSNAAVDV 543 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 S+ R+ +T+V + G IVL GL+ + Q+ + +PLL IP LG LF+++ +++ Sbjct: 544 SFAKRQLNTSVMVEDGQMIVLGGLIDERAQESESKVPLLGDIPYLGRLFKSTSSQLQKSN 603 Query: 410 IFIAATPFLVKPVAMRD 426 + + P +++ D Sbjct: 604 LMVFIKPTIIRDGVTAD 620 >gi|254448307|ref|ZP_05061769.1| general secretion pathway protein D [gamma proteobacterium HTCC5015] gi|198262174|gb|EDY86457.1| general secretion pathway protein D [gamma proteobacterium HTCC5015] Length = 694 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 63/308 (20%), Positives = 116/308 (37%), Gaps = 31/308 (10%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 V + ++ + L + A + + V+ L+I QV ++ I EV Sbjct: 314 TVSSDKEVDIQADPGTNSLIITAAPD-ALRNIESVVRQLDIR-RAQVHVEAIIVEVSDTA 371 Query: 210 LKQIGFQHSITGSSS---------------------GPSKSFAADFGGKFVSEGGDFSVK 248 +++GF + + G + + D G V G Sbjct: 372 ARELGFSYLFANENGFDNETNPVGGALLGGGGDVINGIAAASTGDGSGASVPNGFTVGFG 431 Query: 249 GVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305 + + F +L A+ T L+ P++ + + A G + T S +T ++ Sbjct: 432 DRDNSGNVFAGILRAVASDTEANLLSTPSIVTLDNEEAEIVVGQNVPFVTGSYTTASSGA 491 Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 +V D GV L TP + I L I+ E S V A R+ T+V Sbjct: 492 NNPFQTVERQDVGVTLKITPQINEGDVIRLDIEQEASSVVESSVASGQLITNKREIKTSV 551 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G +VL GL+ D ++ +PLL IP+LG LF+ + ++ + + P +++ Sbjct: 552 MIEDGQMLVLGGLIDDQTRKSLFKVPLLGDIPLLGRLFQYRTNSNDKRNLMVFLHPKILR 611 Query: 421 PVAMRDLS 428 D + Sbjct: 612 DRLSADAT 619 >gi|254507255|ref|ZP_05119391.1| general secretion pathway protein D [Vibrio parahaemolyticus 16] gi|219549715|gb|EED26704.1| general secretion pathway protein D [Vibrio parahaemolyticus 16] Length = 678 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 59/293 (20%), Positives = 113/293 (38%), Gaps = 47/293 (16%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------------- 218 ++ + V++ L+I QV ++ I E+ +G Q Sbjct: 332 NALQDVISQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAMIQYGNAGAPIGQV 390 Query: 219 ---------------ITGSSSGPSKSF-----AADFGGKFVSEGGDFSVKGVLDRFSFET 258 I S++G K + D+ + G L + Sbjct: 391 MVGLEEAKDTTEKKPIRDSNTGAIKYYEETTKQGDYSTLAAALAGVNGAAVSLVMGDWTA 450 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYG 313 ++ A+ + L+ P++T + ASF G + T S++ +V + G Sbjct: 451 LISAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVG 510 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L P + + L I+ EVS V+G N + R+ +T+V + G IVL GL Sbjct: 511 IKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVNDGQMIVLGGL 569 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + + + +PLL IP+LG LF+++ E+ + + P +++ D Sbjct: 570 IDERALESESKVPLLGDIPVLGHLFKSTSTQVEKKNLMVFIKPTIIRDGMTAD 622 >gi|153206247|ref|ZP_01945510.1| bacterial type II and III secretion system family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165919273|ref|ZP_02219359.1| bacterial type II and III secretion system family protein [Coxiella burnetii RSA 334] gi|120577377|gb|EAX34001.1| bacterial type II and III secretion system family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165916996|gb|EDR35600.1| bacterial type II and III secretion system family protein [Coxiella burnetii RSA 334] Length = 349 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 122/275 (44%), Gaps = 7/275 (2%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G++ + V ++ ++ + + Y S +++ L+I QV +K I + Sbjct: 59 SGILSKFGYAAADVRTNQLWILEEQTHIYLIQS---LVSQLDIPI-HQVLIKARIISISD 114 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERA 266 L +G +++ + D + G D + + + L ALE+ Sbjct: 115 HNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQFGVADIPIIKFKNGQLLDLTLSALEQE 174 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + L+ P L + Q+A SG Y+ + G TSVT + + L TP VL Sbjct: 175 GRAQVLSCPELMTNNRQTAIIESGEAIPYQEKTGQ-GNTSVTFNKATLRLKVTPVVLPGN 233 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 RI L++ + + +P+ + ++ T V + + T+VL G+ + QQ + GIP Sbjct: 234 RILLQLNVNQDK-MSSFLVNGVPTIQTQQLTTKVMVNNQETVVLGGIYEQSTQQEEAGIP 292 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L KIPILG LFR+ + + E ++ I TP ++ P Sbjct: 293 GLHKIPILGGLFRHRQRSSERKQLLIFVTPQIISP 327 >gi|56478233|ref|YP_159822.1| general secretory pathway protein D [Aromatoleum aromaticum EbN1] gi|56314276|emb|CAI08921.1| general secretory pathway protein D [Aromatoleum aromaticum EbN1] Length = 719 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 77/354 (21%), Positives = 132/354 (37%), Gaps = 52/354 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G +A ++ + + Y N + V++LL+ QV ++ IAE+ Sbjct: 337 SGNASDRGGMIQADPVNNALIIVAPEAIYRN--LRHVIDLLDRR-RAQVYIEALIAEIST 393 Query: 208 DILKQIGFQH-SITGSSSGPSKSF--AADFGG------------KFVSEGGDFSVKG--- 249 + + G Q S +G S +F +FGG V +G +F + G Sbjct: 394 ERAAEFGIQWQSANTPGAGSSSTFFGGTNFGGAGQNIIGAAQNIGSVGKGMNFLLGGGTV 453 Query: 250 -------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 +++ F+ + LE + L+ P+L + + A G + T + Sbjct: 454 KVPINGQMVEVFNLSLLARFLETDSRTNILSTPSLVTLDNEGAKIVVGRNLPFITGQYTN 513 Query: 303 GA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 ++ D G+ L P + G I L I E S V ++ P+ Sbjct: 514 TGGGTTPANPFQTIERRDVGLTLEVRPQISEGGAIRLDIYQEASSVVPTLDDSAGPTTNK 573 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R +TV + G I L GL++DD +E +PLL IP G+LFR R +T + + Sbjct: 574 RSIQSTVLVDDGAIIALGGLVEDDYSSGEEKVPLLGDIPFAGSLFRYDTRRRTKTNLVVF 633 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 P +++ D YS +A R + I G + G Sbjct: 634 LRPVILRD---------RDSYSTITNA------RYDYIIGQQRNVAPPNALLHG 672 >gi|156972923|ref|YP_001443830.1| general secretion pathway protein D [Vibrio harveyi ATCC BAA-1116] gi|156524517|gb|ABU69603.1| hypothetical protein VIBHAR_00601 [Vibrio harveyi ATCC BAA-1116] Length = 658 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 66/375 (17%), Positives = 134/375 (35%), Gaps = 75/375 (20%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNI 190 VL G+ +Q ++A + + + A+ ++ V++ L+I Sbjct: 259 VLKGVSDNLQAEKQAGQNGASSAQRGEVVIAAHEATNSLVLTAQPDIMMALQDVISQLDI 318 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------------------- 224 QV ++ I E+ +G Q + + Sbjct: 319 R-RAQVLIEALIVEMSEGDGINLGVQWGNLDTGAVIQYGNTGAQIGNVMVGLEEAKDTTK 377 Query: 225 ----------GPSKSFA-------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 G S + D+ + GG + + ++ A+ + Sbjct: 378 TESYWDEDANGGSGDWNTREYIEEGDYSTLAAALGGVNGAAMSIMMGDWTALITAVSSDS 437 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTV 322 L+ P++T + ASF G + T S+S +V + G+ L P + Sbjct: 438 NSNILSSPSITVMDNGEASFIVGEEVPVITGSTSGSNNDNPFQTVDRKEVGIKLKVVPQI 497 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + + + Sbjct: 498 NEGDSVQLTIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALESE 556 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +PLL IP++G LF+++ E+ + + P +++ D + Sbjct: 557 SKVPLLGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIRDGMTADGIT----------QRK 606 Query: 443 FFFNRVNKIYGPKEA 457 + F R ++Y +E Sbjct: 607 YNFIRAEQLYKAQEG 621 >gi|119505085|ref|ZP_01627161.1| Helix-turn-helix, AraC type [marine gamma proteobacterium HTCC2080] gi|119459067|gb|EAW40166.1| Helix-turn-helix, AraC type [marine gamma proteobacterium HTCC2080] Length = 696 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 81/363 (22%), Positives = 135/363 (37%), Gaps = 47/363 (12%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 D + L R + + + R++ D TI+ + L T + Sbjct: 297 ADAVEVAEVLTRVMQNMS-RLDTGGDRKPSTNTNSTIEADEGTNALIIT------ADADE 349 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----- 232 +S + V+ L+I QV ++ I E+ +++G Q S + + Sbjct: 350 MASLEAVIARLDIR-RAQVLVEAIIVEMEITEGQELGLQWIFADDSGAFGSNVSTSSAQQ 408 Query: 233 -----------------------DFGGKFVSEGGDFSVKGVL-DRFSFETVLHALERATA 268 D G G GV+ D S +L+ALE Sbjct: 409 QRNAAIGNALLGDENSNADIGVRDLAGALSQVPGTTLGWGVVGDDLSMSVILNALETQGN 468 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFT 319 L+ P+L + Q A T G + T S S ++ + G+ L T Sbjct: 469 ANILSTPSLLTLDNQEAYITVGQNVPFVTGSYSNTGGASNVQNPFQTIERENVGITLKVT 528 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P V + L I EVS + A RK +T V G +VL GL+KDD+Q Sbjct: 529 PQVNEGDSVVLDIVQEVSSISQQLLAAADVITNERKIETKVMAQDGDVVVLGGLVKDDVQ 588 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVED 438 ++G+P L IP+LG LFRN + ++ + + P +V+ ++R + Y + Sbjct: 589 DSQQGVPFLQDIPLLGRLFRNDVVSVTKSNLLVFIRPTIVRDDESLRGATAEKYRYIRDQ 648 Query: 439 DAK 441 A+ Sbjct: 649 QAE 651 >gi|329900875|ref|ZP_08272624.1| General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) [Oxalobacteraceae bacterium IMCC9480] gi|327549348|gb|EGF33919.1| General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) [Oxalobacteraceae bacterium IMCC9480] Length = 696 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 60/287 (20%), Positives = 110/287 (38%), Gaps = 31/287 (10%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAADFGGK 237 V++ L++ QV ++ I EV + G Q S + G + +F+ D Sbjct: 359 VIDQLDVR-RAQVYIESLIVEVSAKKAAEFGIQWLGLSGNSTSNYRVGAASTFSTDNIAG 417 Query: 238 FVSEGGDFSVKGVLDRFSFE------------TVLHALERATAIRTLAEPTLTAISGQSA 285 + ++ V + + ALE L+ P L + + A Sbjct: 418 LAAASKAGTIPAVGAGLTLGVFRQINGALGLGALARALESDDGTNILSMPNLITLDNEEA 477 Query: 286 SFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 G + T +T A+ +V D G+ L P + G + + I E Sbjct: 478 RIIVGQNVPFITGQYTTQASGGGSGVNPFQTVERKDVGLQLRVRPQISEGGTVKMAIYQE 537 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S N + + R DT V + G +VL GL++D ++ E +P L +P++G Sbjct: 538 TSAVQSSTNTAGIIT-SKRSIDTNVLVDDGQIVVLGGLIEDTLEDGNERVPGLGDLPVVG 596 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 LF+ + NR +T + + P +++ + LS D Y + + Sbjct: 597 NLFKYQKRNRTKTNLMVFLRPTIIR-SNEQSLSLSGDRYDLMRKVQQ 642 >gi|146280952|ref|YP_001171105.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri A1501] gi|145569157|gb|ABP78263.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri A1501] Length = 712 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 109/277 (39%), Gaps = 26/277 (9%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + Q ++++ L+I QV ++ I E D K +G + + ++ Sbjct: 433 QTQERLDELRRIVAQLDIP-VRQVMIEARIVEANVDYDKSLGVRWGGNLGAGNKWSAWGK 491 Query: 233 DF---------GGK--------------FVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + GG+ V + V D + L A+E+ Sbjct: 492 NGNLDIEDGEDGGQQITWPMNTPFVDMGAVGSTSGIGLGFVTDNAILDLQLSAMEKTGNG 551 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 +++P + ++A G + Y+ SSS ++ + + + L TP + RI Sbjct: 552 EVVSQPKVVTADKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 610 Query: 330 LRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + ++ EP A +P+ R + + V + G TIV+ G+ + + + +P L Sbjct: 611 MEVKVTKDEPDFSQAATTGVPAIRKNEVNAKVLVTDGETIVIGGVFSNTQSKSVDKVPFL 670 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +P LG LFR ++E+ + TP ++ +++ Sbjct: 671 GDLPYLGRLFRRDLVQDRKSELLVFITPRIMNNQSIQ 707 >gi|188993080|ref|YP_001905090.1| Type II secretory pathway component [Xanthomonas campestris pv. campestris str. B100] gi|167734840|emb|CAP53051.1| Type II secretory pathway component [Xanthomonas campestris pv. campestris] Length = 759 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 84/326 (25%), Positives = 132/326 (40%), Gaps = 44/326 (13%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 ++++ +E+ D V + AV + T L ++ + S + V+ L++ Sbjct: 431 NASVTLEVEGDKVGVS-----------AVAETNTLLVRTSAQAW--KSIRDVIEKLDVM- 476 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH---------SITGSSSGPSKSFAADFG--GKFVSE 241 QV ++ IAEV Q G S S GP+ AA G G Sbjct: 477 PMQVHIEAQIAEVTLTGRLQYGVNWYFENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGS 536 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 V + ++ AL++ T +R L P++ + A+ G + + S + Sbjct: 537 VTSNGVAWTFLGKNAAAIISALDQVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSIN 596 Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------- 347 TG +SV D GV+L P V G + L I EVS P A Sbjct: 597 TGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTTVN 656 Query: 348 ----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 R+ T + +G TI+LAGL+ D GIP LSK+P++GALF Sbjct: 657 SAACNVDINTRRVKTEAAVQNGDTIMLAGLIDDSTTDGSNGIPFLSKLPVVGALFGRKTQ 716 Query: 404 NREETEIFIAATPFLVK-PVAMRDLS 428 N + E+ + TP +V+ P RDL+ Sbjct: 717 NSDRREVIVLITPSIVRNPQDARDLT 742 >gi|146309174|ref|YP_001189639.1| general secretion pathway protein D [Pseudomonas mendocina ymp] gi|145577375|gb|ABP86907.1| general secretion pathway protein D [Pseudomonas mendocina ymp] Length = 748 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 24/255 (9%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF----- 245 A QV ++ I E+ DI +G Q +I G + ++ G + G Sbjct: 329 APRAQVLVEAAIVEMSGDINDALGVQWAIDGRHNALGGVNFSNTGLSIGTLLGAIARDET 388 Query: 246 ---------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 L +F ++ AL L+ PTL + Q A G ++ Sbjct: 389 AELAKTLPNGAIFGLGNDNFGMLITALSATGKSNLLSTPTLLTLDNQPAEILVGQNVPFQ 448 Query: 297 TVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGD 347 T S +T A T++ D GV L TP + + L I+ E+S P G+NA Sbjct: 449 TGSYTTDASGAGNPFTTIERKDIGVTLKVTPHINDGATLRLVIEQEISSIAPSTGLNAQA 508 Query: 348 MP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + R +TV G IVL GL++DD +PLL IP +G LFR++R R+ Sbjct: 509 VDLVTNKRSIKSTVLADDGQVIVLGGLIQDDTSASASKVPLLGDIPGVGRLFRSTRDARQ 568 Query: 407 ETEIFIAATPFLVKP 421 + + + P + + Sbjct: 569 KRNLMVFLRPSVARD 583 >gi|149911025|ref|ZP_01899654.1| putative MSHA biogenesis protein MshL [Moritella sp. PE36] gi|149805928|gb|EDM65914.1| putative MSHA biogenesis protein MshL [Moritella sp. PE36] Length = 532 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 104/249 (41%), Gaps = 18/249 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L+V I EV + + G ++ S+ SF +F +++ + L Sbjct: 263 QRQVLLEVKIMEVTLNDGYKQGIDWNVNNSNVAADSSF--NFSITDITDLASGAGVFTLA 320 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------- 304 F + L+ + L+ P +TA++ Q A G + T SST + Sbjct: 321 GNDFSAAISLLKTQGDVNVLSSPRVTALNNQKAVIKVGSDEYFVTGYSSTKSTSSDDDSI 380 Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPS--YRVRKA 356 +T G+ L TP + S G + L + + E V ++P VR+ Sbjct: 381 EQDVELTPFFSGIALDVTPQIDSDGGVLLHVHPSIIEVTDSNKIVAGIELPLAKSDVRET 440 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 DT V+ SG IV+ GL+K + L +P L IP LG LF + ++TE+ I P Sbjct: 441 DTVVKAKSGEIIVIGGLMKTANKDLVSKVPFLGDIPWLGELFTYRSQSVQKTELIILIKP 500 Query: 417 FLVKPVAMR 425 +V R Sbjct: 501 IVVDQNTWR 509 >gi|51591323|emb|CAH22989.1| putative outer membrane secretin family protein [Yersinia pseudotuberculosis IP 32953] Length = 455 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + + L+++G + + G+++ F + + F V + Sbjct: 224 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 283 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + E+ + +A P L Q+AS G Y A ++ Sbjct: 284 GGRLLELELSAL-EQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 342 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P I + G+ M ++ T V + G TI Sbjct: 343 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 402 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + +Q +PLL+ IP+LGA+FR + E+ I TP L+ Sbjct: 403 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLI 453 >gi|24375599|ref|NP_719642.1| MSHA biogenesis protein MshL [Shewanella oneidensis MR-1] gi|24350494|gb|AAN57086.1|AE015842_6 MSHA biogenesis protein MshL [Shewanella oneidensis MR-1] Length = 560 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 69/296 (23%), Positives = 118/296 (39%), Gaps = 23/296 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L +V ++ V + L + ++ + QV L+ I EV Sbjct: 241 LTAIVGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLSSAESHLQRQVILEAKILEVT 300 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHA 262 Q G Q G + G +S+ S+ GV + F T++ Sbjct: 301 LSDGYQQGIQWDNVLGHVGNTNINFGTSAGTGLSDKITSSLGGVTSLSIKGSDFNTMISL 360 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312 L+ + L+ P +TA + Q A G + T SST G T VTT Sbjct: 361 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 420 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP--SYRVRKADTTVELP 363 G+ L TP + G + L + V + + + ++P +R++DT + Sbjct: 421 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSNESLELPLAQSEIRESDTVIRAA 480 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +V+ GL+K + ++ +PLL IP +G LF+N +++TE+ I P +V Sbjct: 481 SGDVVVIGGLMKSENIEVVSQVPLLGDIPFVGELFKNRSKQKKKTELIIMLKPTVV 536 >gi|323494823|ref|ZP_08099920.1| type IV pilus assembly protein PilQ [Vibrio brasiliensis LMG 20546] gi|323310931|gb|EGA64098.1| type IV pilus assembly protein PilQ [Vibrio brasiliensis LMG 20546] Length = 389 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 116/261 (44%), Gaps = 22/261 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------- 229 ++ K+++ L++A QV ++ I V L+++G + + +++ ++ Sbjct: 129 NAVKQIVRSLDVA-VKQVQIEARIVTVDEGQLEELGVRWGLNQNNNSRNRIAGGIEVNNL 187 Query: 230 --------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 + G V+ F + + + L A++ ++ P L Sbjct: 188 DQSSLDDRLNVNLGATSVNAASVAFRLATLGSDVLLDLELSAMQTEAKAEVISRPKLMTT 247 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP- 339 + Q+A G + Y SS GA+SV + L TP +LS R+ L + P Sbjct: 248 NKQAAYIEQGSEIPYFE-SSENGASSVAFKKAVLSLKVTPQILSDDRLILDLSVTQDRPG 306 Query: 340 -VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 V+ +G+ + ++ DT V + +G T+VL G+ + + + +PL +P++G+LF Sbjct: 307 NVVKTGSGEAVAINTQRIDTQVLVNNGQTVVLGGIYQHSVTDAVDKVPLFGDLPLIGSLF 366 Query: 399 RNSRFNREETEIFIAATPFLV 419 R S N ++E+ I TP +V Sbjct: 367 RRSYQNIAKSELLIFVTPTIV 387 >gi|322515010|ref|ZP_08068020.1| type IV pilus secretin PilQ [Actinobacillus ureae ATCC 25976] gi|322118999|gb|EFX91171.1| type IV pilus secretin PilQ [Actinobacillus ureae ATCC 25976] Length = 431 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 106/251 (42%), Gaps = 14/251 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFV 239 K++ L+ E Q+ ++ I + + L+++G + + ++G + S A+ Sbjct: 165 KLIRNLDRPTE-QIAIEARIVTISSENLQELGVRWGMFSPANGHHKIAGSLEANGLPNTN 223 Query: 240 SEGGDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 +F V ++ + L ALE+ + +A P L + + AS G Sbjct: 224 HLNVNFPVNNAASLALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQG 283 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMP 349 + Y + ++ + + L TP + + +I L + + P + Sbjct: 284 TEIPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPNSTSSTVHGLV 343 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + ++ +T V G TIVL G+ + + ++ +P+L IP++ LF +S + E Sbjct: 344 TIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVIKKLFSHSSDKISKRE 403 Query: 410 IFIAATPFLVK 420 + I TP++VK Sbjct: 404 LVIFVTPYIVK 414 >gi|253689235|ref|YP_003018425.1| general secretion pathway protein D [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755813|gb|ACT13889.1| general secretion pathway protein D [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 640 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 67/350 (19%), Positives = 126/350 (36%), Gaps = 45/350 (12%) Query: 146 VLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYAN----------SSSKKVMNLLNIAGED 194 VL G+ +IQ D Q A+ +S Q + ++V+ L+I Sbjct: 266 VLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP- 324 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKF 238 QV ++ IAEV+ +G Q + + + G Sbjct: 325 QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAA 384 Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 + G F+ + + ++ ++ AL + LA P++ + A+F G + Sbjct: 385 TTALGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLA 444 Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPS 350 +T S +V G+ L P + + L I+ EVS + + Sbjct: 445 GSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLGAT 504 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + Sbjct: 505 FNTRTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSQETKKRNL 564 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 + P +++ + Y +K FN + + Sbjct: 565 MLFIRPSIIRDRSQ---------YQSASASKYHSFNAEEEKQREANGGKA 605 >gi|307260659|ref|ZP_07542351.1| hypothetical protein appser12_2340 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869736|gb|EFN01521.1| hypothetical protein appser12_2340 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 432 Score = 183 bits (464), Expect = 7e-44, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 14/251 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFV 239 +++ L+ E Q+ ++ I + + L+++G + I ++G + S A+ Sbjct: 166 QLIRNLDKPTE-QIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGSLEANGLPNTN 224 Query: 240 SEGGDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 +F V ++ + L ALE+ + +A P L + + AS G Sbjct: 225 RLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQG 284 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMP 349 + Y + ++ + + L TP + + +I L + + P G + Sbjct: 285 TEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKKILLDLVVTQNSPNSTGSTLQGLV 344 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF +S + E Sbjct: 345 TIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFSHSSDKISKRE 404 Query: 410 IFIAATPFLVK 420 + I TP++VK Sbjct: 405 LVIFVTPYIVK 415 >gi|308535177|ref|YP_002137419.2| type II secretion system protein GspD [Geobacter bemidjiensis Bem] gi|308052522|gb|ACH37623.2| type II secretion system protein GspD, putative [Geobacter bemidjiensis Bem] Length = 640 Score = 183 bits (464), Expect = 7e-44, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 112/273 (41%), Gaps = 19/273 (6%) Query: 169 SQSGRNQYANSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +S + +S NLL + QV ++ IAEV + K++G Q + + Sbjct: 326 DKSTNSLVIMASPTDYQNLLQVIQKLDRRSRQVFVQAMIAEVSANKAKELGLQWGVVTGA 385 Query: 224 SGPSKSFAADFG--GKFVSEGGDFSVKGVLD-------RFSFETVLHALERATAIRTLAE 274 S + S F G G ++ G L F L AL+ A+ L+ Sbjct: 386 SNGTLSTVGTFDPFGAVAGLTGTLTLAGQLGITPPDAGVALFPATLKALQSNGALNVLST 445 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGL 330 P + + A G + + ++ T S+ D G++L P + I L Sbjct: 446 PNIMTSDNKEAEIFVGENVPFLSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYIKL 505 Query: 331 RIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 I E+S G R A T+V + + T+++ GL++D Q + IPLL Sbjct: 506 DIYQEISAVKDFGTATNPNLGSTKRSAKTSVVVKNTDTVIIGGLIQDTDQVTESKIPLLG 565 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 IP+LG LF+ + R++T + I TP ++K Sbjct: 566 DIPLLGWLFKTKKTTRDKTNLLIMLTPRIIKDA 598 >gi|114564903|ref|YP_752417.1| pilus (MSHA type) biogenesis protein MshL [Shewanella frigidimarina NCIMB 400] gi|114336196|gb|ABI73578.1| pilus (MSHA type) biogenesis protein MshL [Shewanella frigidimarina NCIMB 400] Length = 556 Score = 183 bits (464), Expect = 7e-44, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 115/271 (42%), Gaps = 26/271 (9%) Query: 182 KKVMNLLNIAG---EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 +++ + L IA + QV L+ I EV Q G Q +G + + G+ Sbjct: 270 RQIRSFLQIAESHLQRQVILEAKIIEVTLSDGYQQGIQWENVLGHAGSTNIDFSTSAGQG 329 Query: 239 VSEGGDFSVKGV----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +S ++ GV F T+++ L+ + L+ P +TA + Q A G Sbjct: 330 LSNAITSAIGGVTSINFTGSDFSTIINLLDTQGDVDVLSSPRVTASNNQKAVIKVGNDEY 389 Query: 295 YKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV- 343 + T SST G T VTT G+ L TP + G + L + V + Sbjct: 390 FVTDVSSTTVAGTTPVTTPQVELTPFFSGIALDVTPQIDEYGNVILHVHPSVIDVTSQTK 449 Query: 344 ------NAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + ++P +R++DT + SG +V+ GL+K + + +PLL IP LG Sbjct: 450 EIKISDSTLELPLAQSEIRESDTVIRAASGDVVVIGGLMKSENIETVSKVPLLGDIPFLG 509 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 F + ++++TE+ I P +V +D Sbjct: 510 EAFTSRTKSKKKTELIIMLKPTVVGGDTWKD 540 >gi|119472772|ref|ZP_01614709.1| General secretion pathway protein D [Alteromonadales bacterium TW-7] gi|119444731|gb|EAW26036.1| General secretion pathway protein D [Alteromonadales bacterium TW-7] Length = 687 Score = 183 bits (464), Expect = 7e-44, Method: Composition-based stats. Identities = 74/327 (22%), Positives = 123/327 (37%), Gaps = 62/327 (18%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------- 217 S + V+ L+I QV ++ I EV +G Q Sbjct: 339 SLESVIERLDIR-RAQVLVEAIIIEVMEGDGVNLGLQWISEQGGMLQFNNGTTVPVGSLA 397 Query: 218 -------------SITGSSSGPSKSFA----ADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 +I G+ SG + D+G G + + + + ++ Sbjct: 398 VAAEQAQDTTVTQNIIGTESGNVTPYTETTEGDYGPLASLLSGINGLALGVVKNDWGAII 457 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315 A+ T LA P++T + + AS G + T S + +V + G+ Sbjct: 458 QAVATDTNSNILATPSITTMDNEEASILVGQEVPIITGSQTGTNNSNPFQTVERQEVGIK 517 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L TP + + L I+ EVS V G A D+ S R TTV GG +VL GL+ Sbjct: 518 LIVTPQINDGSAVQLTIEQEVSS-VSGATAVDI-SVNKRAIKTTVIADDGGMVVLGGLID 575 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 +D+Q+ +PLL IP+LG LFR++ R + + + P +++ Sbjct: 576 EDVQESVSKVPLLGDIPVLGHLFRSTNTTRRKRNLIVFIRPTIIRDGV------------ 623 Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEG 462 FN+ N I G + + +G Sbjct: 624 ---SMNKLSFNKYNFIRGEQTKQQEDG 647 >gi|121634273|ref|YP_974518.1| pilus secretin [Neisseria meningitidis FAM18] gi|120865979|emb|CAM09716.1| pilus secretin [Neisseria meningitidis FAM18] Length = 589 Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 323 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 381 Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 382 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 441 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + S + G +S T + L TP + G+I + ++ P Sbjct: 442 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 501 Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 502 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 561 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 562 RGKKTDRRELLIFITPRIM 580 >gi|329894543|ref|ZP_08270351.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC3088] gi|328922981|gb|EGG30307.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium IMCC3088] Length = 691 Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 109/270 (40%), Gaps = 34/270 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAAD----- 233 + +++L++I QV ++ I + ++ ++G + G + S + D Sbjct: 418 RNLIDLVDIPI-RQVMIEARIVIAQSNLDDELGISWGGGHTNNNFFGNALSISGDVENVT 476 Query: 234 ---------FGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRTL 272 G G G F+V L ALE + Sbjct: 477 NLNQSIIDGLPGSVSLPGSLLVDLGVAEPAGSFAVGFTSKDVFLTAELSALEAVGKGEVV 536 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 ++P + Q AS SG + Y+ SS+ GAT+ + + L TP + RI L + Sbjct: 537 SQPKVITGDKQKASIKSGTEVPYQE-SSAGGATATQFKEAVLQLDVTPNITPDDRILLDL 595 Query: 333 QTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 V N G +P+ + T V + +G TIVL G+ + + + +P+L Sbjct: 596 VINQDSIGDLVPSGNGGSIPTIDTTELTTQVLVGNGETIVLGGVFRTEDLEKVSKVPVLG 655 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IPI+G F++S +R +TE I TP ++ Sbjct: 656 DIPIMGQFFKSSSTSRTKTETLIFITPRIL 685 >gi|59713081|ref|YP_205857.1| general secretion pathway protein D [Vibrio fischeri ES114] gi|59481182|gb|AAW86969.1| general secretion pathway protein D [Vibrio fischeri ES114] Length = 673 Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 63/291 (21%), Positives = 116/291 (39%), Gaps = 46/291 (15%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----------SITGSSSG--- 225 + K V+ L+I QV ++ I E+ +G Q S TG+S G Sbjct: 325 AMKDVIAQLDIR-RAQVLIEALIVELAEGDGVNLGVQWGNLETGTMIQYSNTGASIGATM 383 Query: 226 ---------PSKSFAADFGGKFV----------------SEGGDFSVKGVLDRFSFETVL 260 + + D GKF+ + GG + ++ ++ Sbjct: 384 VGLEEAKDKTTATAVYDENGKFLRNETTTKEGSYDALAGALGGVQGAAVSIMMGDWKALV 443 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315 A+ + L+ P++T + ASF G + T S+S +V + G+ Sbjct: 444 TAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTSGSNNENPFQTVDRKEVGIK 503 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L P + + L I+ EVS V+G N + R+ +T+V + G +VL GL+ Sbjct: 504 LKVVPQINEGDSVRLDIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLID 562 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + + +P L IP+LG LF+++ E+ + + P +++ D Sbjct: 563 ERALESESKVPFLGDIPVLGHLFKSTSTRVEKKNLMVFIKPTIIRNGMTAD 613 >gi|33151657|ref|NP_873010.1| competence protein E [Haemophilus ducreyi 35000HP] gi|33147878|gb|AAP95399.1| competence protein E [Haemophilus ducreyi 35000HP] Length = 419 Score = 182 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 75/432 (17%), Positives = 155/432 (35%), Gaps = 34/432 (7%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65 R F++ S L A +++ E K +S ++K L++ Sbjct: 2 RILFSLFFFISLSLLAQPLSLSLKNAPTAEILSYLAEENMKNIVLSDQIDKNTTLRIENS 61 Query: 66 VQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 D +V + S R +Y G + K + +D + + Sbjct: 62 HFDEIV--ESIVRANQLSKRKEKQIYFIGHL----------KEDKAIEKIDNGDKPKLIT 109 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 + L A I +G V + Q E S + + + + + + Sbjct: 110 QTIKLDYAKASEVIESLTKGKG---NGNVLSEQGYLYFDERSNSLIIKDSPDSMKHILA- 165 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSF 230 ++ L+ E Q+ ++ I + L+++G + + S G + + Sbjct: 166 -LIKNLDKPTE-QIAIEARIVTISSQDLQELGVRWGMFSPSDDYHKVASSLETKGLTTAN 223 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + + ++ + L ALE+ + +A P L + + AS G Sbjct: 224 HLNVNFPVNNATSLALQVARINSRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQG 283 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMP 349 + Y + ++ + + L TP + + +I L + + P + A + Sbjct: 284 AEIPYVLYNRKDEVKNIEFKEAVLGLQVTPHISADNQILLDLVVTQNSPNLNNTAVNGLI 343 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + ++ +T V G TIVL G+ + + ++ +PLL IP+L LF +S + E Sbjct: 344 TIDKQELNTQVFAKHGETIVLGGIFQHLTAKGEDRVPLLGSIPVLKKLFSHSTDKITKRE 403 Query: 410 IFIAATPFLVKP 421 + I TP+LV+ Sbjct: 404 LVIFVTPYLVQD 415 >gi|89093502|ref|ZP_01166450.1| type 4 fimbrial biogenesis protein PilQ [Oceanospirillum sp. MED92] gi|89082192|gb|EAR61416.1| type 4 fimbrial biogenesis protein PilQ [Oceanospirillum sp. MED92] Length = 702 Score = 182 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 101/249 (40%), Gaps = 25/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT----------------------GSSSGPSKSFA 231 +QV ++ + ++ K +G + +++G + + Sbjct: 451 EQVLVEARLVNATSNVTKDLGVKWGFGYNDVDNGKGWIVDNSIGNVNFGNTTAGNTSNLM 510 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D G S G L ALE +++P + +G+ A SG Sbjct: 511 VDLGASVTSPGTIAIGFKPGASSLLALELSALETDGKAEIVSQPKVLTTNGKQAKIESGS 570 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 + Y+TV G S+ D + L TP + RI + + + G++ S Sbjct: 571 EIPYQTV--EDGEVSIEFKDVVLSLDVTPRINPGDRIAMDLLITQDSIGQVLPNGEI-SI 627 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + TTV +P G TIVL G+ K++ + +PLL +PI+G LFRN E+TE+ Sbjct: 628 DNNELQTTVVVPDGQTIVLGGVFKNETSETINKVPLLGDLPIMGPLFRNKENQAEKTELL 687 Query: 412 IAATPFLVK 420 I TP LV+ Sbjct: 688 IFITPKLVR 696 >gi|300721146|ref|YP_003710414.1| putative transport protein [Xenorhabdus nematophila ATCC 19061] gi|297627631|emb|CBJ88152.1| putative transport protein, possibly in biosynthesis of type IV pilin (fragment) [Xenorhabdus nematophila ATCC 19061] Length = 325 Score = 182 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 6/232 (2%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKFVSEGGDFSVKG 249 + QV + I R+ L ++G +T S + S+ + Sbjct: 93 TPQQQVQIIAHIVTSSREALHELGIHWGVTADPVNRSLGLNRLNLHQPAGSQRHRLVLNT 152 Query: 250 V-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + E L ALE+ + +A P LTA AS G + Y T++ Sbjct: 153 ARIHANLLEMELSALEQENQLDIIASPRLTASHQHPASIKQGSEIPYVV--QDKDKTTIQ 210 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGG 366 + + + TP +L G+I L ++ + P + + + ++ T V + +G Sbjct: 211 FKEAVLGMEVTPHILREGKIRLALKISQNAPGFPVSQGGNENLAIDKQEIMTQVTVRNGE 270 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 T++L G+ + ++ +P LS IP+LG LF + E+ I TP L Sbjct: 271 TLILGGIFQQKKVASQQKVPYLSDIPLLGTLFNQNGEQHSRRELVIFITPQL 322 >gi|40644697|emb|CAD91899.1| secretin precursor [Neisseria meningitidis serogroup B] Length = 761 Score = 182 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG 235 +K+++ L++ QV ++ I E + +G + TG +S + FG Sbjct: 495 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFG 553 Query: 236 G------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + S+ + + L A E + +TLA P + + + Sbjct: 554 GDDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKPKTLANPRVLTQNRK 613 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A SG + + S + G +S T + L TP + G+I + ++ P Sbjct: 614 EAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQ 673 Query: 342 GVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + + + +T + +GGT+++ G+ ++D +PLL IP++G LF+ Sbjct: 674 CASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKT 733 Query: 401 SRFNREETEIFIAATPFLV 419 + E+ I TP ++ Sbjct: 734 RGKKTDRRELLIFITPRIM 752 >gi|330954627|gb|EGH54887.1| general secretion pathway protein D [Pseudomonas syringae Cit 7] Length = 356 Score = 182 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 118/309 (38%), Gaps = 21/309 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEV 205 G + + ++ S + + K++ + + QV ++ I EV Sbjct: 35 SGSGGNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEV 94 Query: 206 RRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFE 257 + +G Q + +SG + + G + G ++ F + + Sbjct: 95 QLTGELDMGVQWYLGRLAGNSGTTGNVTNTSGSQGAIGTGGAALASTDAFFYSFVSNNLQ 154 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHD 311 L ALE + L+ P+L ++ Q A G S +T ++ V Sbjct: 155 VALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTDTTLSSVEYVQ 214 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTI 368 GV+L P + G + + IQ +VS N D P R T V SG T+ Sbjct: 215 TGVILDVVPRINPGGLVYMDIQQQVSSADTNANNNDANGNPRISTRSVATQVAAQSGETV 274 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +L GL+K D + +P L +IP L LF N+ +++ TE+ + TP ++ + Sbjct: 275 LLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVI--TSSSQAR 332 Query: 429 RPDDHYSVE 437 + D Y + Sbjct: 333 QVTDDYRQQ 341 >gi|88704137|ref|ZP_01101852.1| General secretion pathway protein D [Congregibacter litoralis KT71] gi|88701964|gb|EAQ99068.1| General secretion pathway protein D [Congregibacter litoralis KT71] Length = 696 Score = 182 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 94/470 (20%), Positives = 168/470 (35%), Gaps = 70/470 (14%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK-- 76 P A + +NA +I+ S I + + I +++ + + V V++ Sbjct: 167 LVPQQAHMAAYAPSNAIIISDSASNISRIQDIIERMDQSAVQETDVIALRYAVAEDVVRM 226 Query: 77 -----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT----- 126 A ++ + + + N +L+ D Q + L+ LE T Sbjct: 227 LEKLNASEAKNNGGEVDVLLVPDKRTNSVLVTGDELQRARIRSLVAYVDTPLEQTGNVKV 286 Query: 127 ----------LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 + + + + + + A E + + + + ++ Sbjct: 287 IYLEYAQATAIAEVLTRVMQNINKLDTGDAKAARASSNTATIEADEGTNSLIITADADEM 346 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSF 230 A + + V+ L+I QV ++ I E+ + +G Q GSS S S Sbjct: 347 A--ALESVITRLDIR-RAQVLVEAIIVELEVTDGQDLGLQWLFANDSGFYGSSINASDSR 403 Query: 231 AADFGGKFV---SEGGDFSVKGVLD-----------------------RFSFETVLHALE 264 A + G + S+GG S G D S +L+ALE Sbjct: 404 ARNIAGAILPPDSDGGTGSTTGDFDVGNLAAALAGSAGLSLGWGVVGEDLSMTVILNALE 463 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVV 315 + L+ P+L + Q A T G Q + T S + ++ + G+ Sbjct: 464 EQSNANILSTPSLLTLDNQEAFITVGQQVPFITGSFTNTGGNNGAQNPFQTIERENVGIT 523 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP----SYRVRKADTTVELPSGGTIVLA 371 L TP V + L I+ EV+ RK T V G +VL Sbjct: 524 LTVTPQVNEGDSVVLEIEQEVNSLTGATLVASAAAADLITNERKIRTKVLAEDGRVVVLG 583 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 GL+KDD+Q ++ +P+L IP LG LFRN + +T + I P +++ Sbjct: 584 GLIKDDVQSTEQRVPILGDIPYLGRLFRNDAVSVSKTNLMIFIRPTIIRD 633 >gi|307245013|ref|ZP_07527110.1| hypothetical protein appser1_2250 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854178|gb|EFM86386.1| hypothetical protein appser1_2250 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 429 Score = 182 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 107/251 (42%), Gaps = 14/251 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFV 239 +++ L+ E Q+ ++ I + + L+++G + I ++G + S A+ Sbjct: 163 QLIRNLDKPTE-QIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGSLEANGLPNTN 221 Query: 240 SEGGDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 +F V ++ + L ALE+ + +A P L + + AS G Sbjct: 222 RLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQG 281 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMP 349 + Y S ++ + + L TP + + +I L + + P G + Sbjct: 282 TEVPYVLYSRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPNSTGSTLQGLV 341 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF +S + E Sbjct: 342 TIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFSHSSDKISKRE 401 Query: 410 IFIAATPFLVK 420 + I TP++VK Sbjct: 402 LVIFVTPYIVK 412 >gi|149911345|ref|ZP_01899965.1| putative type II secretory pathway, component EpsD [Moritella sp. PE36] gi|149805585|gb|EDM65588.1| putative type II secretory pathway, component EpsD [Moritella sp. PE36] Length = 699 Score = 182 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 109/284 (38%), Gaps = 47/284 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGG- 236 ++V+N L+I QV ++ I E+ G Q T ++G G Sbjct: 335 QQVINQLDIR-RAQVLVEAIIVEISEGDGINFGVQWLSEAGGTQYNNGTQVPLTTIGAGI 393 Query: 237 ----------------------------------KFVSEGGDFSVKGVLDRFSFETVLHA 262 +S ++ + SF ++ A Sbjct: 394 YDAQDTTTTTTGTDAQGNPTSTTSTTTGDISTLAAALSGVNGLALGVMNSAKSFGAIIQA 453 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317 + LA P++ + Q ASF G + T SS++ +V + G+ L Sbjct: 454 SANDSNSNILATPSIMTLDNQEASFIVGEEVPVITGSSASSGNDNPFQTVERREVGIKLT 513 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + + L I+ EVS+ + + ++ R+ +TT+ SG T+V+ GLL + Sbjct: 514 VTPQINEGDAVQLTIEQEVSQVLGSTSVD--VTFAKRQVNTTILADSGQTVVIGGLLDEQ 571 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +P L IP +G LF+++ + ++ + I +++ Sbjct: 572 VIESVSKVPWLGDIPWIGNLFKSTSSSTKKRNLMIFIKATIIRD 615 >gi|254447504|ref|ZP_05060970.1| type 4 fimbrial biogenesis protein PilQ [gamma proteobacterium HTCC5015] gi|198262847|gb|EDY87126.1| type 4 fimbrial biogenesis protein PilQ [gamma proteobacterium HTCC5015] Length = 721 Score = 182 bits (463), Expect = 9e-44, Method: Composition-based stats. Identities = 62/272 (22%), Positives = 103/272 (37%), Gaps = 32/272 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------GSSSGPSKSFAA 232 + ++ L+I QV ++ I D KQ+G + + G+ G S +F Sbjct: 449 RSMLQRLDIP-VKQVLIESRIVIASDDFDKQLGSRFGVNRIDPLPVGEGAVFGGSDTFNL 507 Query: 233 ------------------DFGGKFVSEGGDFSVKGVLDRFSF-ETVLHALERATAIRTLA 273 +F S G F+ + E L AL+ ++ Sbjct: 508 QGRQSGGDLNINSRPMNFNFPANAGSSTGQFAFALPTSSGNLLELELSALQAEGKGEIIS 567 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 P + + + A G + Y +SS GA +V + L TP + RI L + Sbjct: 568 TPRVITANQKEAFIEQGVEIPYLEAASS-GAVTVAFKKAVLSLTATPQITPDDRIILDLN 626 Query: 334 TEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + + G +PS R+ +T V + +G T+VL G+ + + IP L I Sbjct: 627 VKKDNVGEIFGEGEIQVPSIDTREVETQVLVKNGETVVLGGIFEHETLDSVTKIPFLGDI 686 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVA 423 P +G LFR + EI I TP +V+ Sbjct: 687 PGIGRLFRREIKQNSKREILIFVTPKIVRDSV 718 >gi|88705191|ref|ZP_01102902.1| GSP-D family Protein [Congregibacter litoralis KT71] gi|88700281|gb|EAQ97389.1| GSP-D family Protein [Congregibacter litoralis KT71] Length = 728 Score = 182 bits (463), Expect = 9e-44, Method: Composition-based stats. Identities = 64/328 (19%), Positives = 127/328 (38%), Gaps = 49/328 (14%) Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L + ++ + +V++ ++ ++ + +L+E +++++ Sbjct: 415 LFQAGSEDGGSLISSRGSVIVEARTNSLIVTETSAKLAEI---------------RELID 459 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------SITGSSSGPSKSFAA 232 ++I QV ++ I + D+ K++G Q S+TG ++ + Sbjct: 460 RVDIPI-RQVMIESRIVIAQSDLEKELGIQWGGGYLEPDANGNILSVTGDATNAVNLNNS 518 Query: 233 DFGGKFV---------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 G S F+V L ALE A +++P + Sbjct: 519 VINGTQPDLSYPGALLVDLGSGSATSGFAVGFTSSELFLTAELSALEAAGKSEVVSQPKV 578 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 Q A+ SG + ++ ++S GAT+V + + L TP + RI L + Sbjct: 579 ITGDKQPATIKSGTEIPFQQAAAS-GATAVQFKEAVLKLDVTPNITPDDRILLDLVINQD 637 Query: 338 EP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 V G +P+ + T V + +G T+VL G+ + + + +P +P + Sbjct: 638 SVGDLVPSGQGGLIPAIDTTQLTTQVLVGNGETVVLGGVFRTENLETTSKVPFFGDLPYV 697 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422 GALFRN R +TE I TP ++ Sbjct: 698 GALFRNESSQRTKTETLIFITPRILADT 725 >gi|269103980|ref|ZP_06156677.1| type IV pilus biogenesis protein PilQ [Photobacterium damselae subsp. damselae CIP 102761] gi|268163878|gb|EEZ42374.1| type IV pilus biogenesis protein PilQ [Photobacterium damselae subsp. damselae CIP 102761] Length = 583 Score = 182 bits (463), Expect = 9e-44, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 98/264 (37%), Gaps = 26/264 (9%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---------- 229 S ++++ L+I QV ++ I V + ++G + + + + Sbjct: 320 SIEEIITALDIP-VKQVQIEARIVTVDEGDIDELGVRWGVVNQNGSTTIGGSIEGNLASS 378 Query: 230 ------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + G L + L AL+ + ++ P L Sbjct: 379 GLLGDDATVDDFLNVNLGAITPGASSIAFQVAKLGDILLDLELSALQAESKAEIISSPRL 438 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + ++A G + Y +SS GA SV + L TP + ++ L + Sbjct: 439 VTTNKKAAYIEQGTEIPYLEAASS-GAVSVDFKKAVLSLMVTPQITPDDKLVLDLLVTQD 497 Query: 338 EPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + V G+ + ++ T V + +G T+VL G+ + + +PLL IP LG Sbjct: 498 KVGETVVTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIYQHQVNNSVRKVPLLGDIPGLG 557 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LFR+ + E+ I TP ++ Sbjct: 558 VLFRHKLQEMGKRELLIFVTPKII 581 >gi|119899935|ref|YP_935148.1| type 4 fimbrial biogenesis protein [Azoarcus sp. BH72] gi|119672348|emb|CAL96262.1| probable type 4 fimbrial biogenesis protein [Azoarcus sp. BH72] Length = 707 Score = 182 bits (463), Expect = 9e-44, Method: Composition-based stats. Identities = 54/272 (19%), Positives = 112/272 (41%), Gaps = 33/272 (12%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------------- 218 S ++++N +++A QV ++ I E ++ + +G + Sbjct: 431 GSLRRLINEIDVA-PRQVLIEARIVEASKEFARDLGVRLGYGDAKDKSLGGGAKLGFGSS 489 Query: 219 --ITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALERAT 267 ++ +++ + F + G S G + ++ L ALE Sbjct: 490 EFVSSTTTAGTVDFQRNVGESATSGSGFLPTGFGSLNLTLFNSSLTRFLNLELAALESDG 549 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 R ++ P + + AS G + Y SSS GAT+V + L P + GR Sbjct: 550 RGRVVSSPRVLTANQVEASIEQGTEVPYLQASSS-GATNVAFKKAVLSLKVKPQITPDGR 608 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L I+ P+ ++P + + V + +GGT+V+ G+ +++ ++ +P+ Sbjct: 609 LQLSIEVNKDRPLFESAVLNVPPIETKNVKSEVLIDNGGTVVIGGIYEEEETSNEDRVPI 668 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L ++P++G LFR E+ + TP +V Sbjct: 669 LGELPVVGFLFRTRSKISNRKELLVFITPKIV 700 >gi|30250239|ref|NP_842309.1| pilQ; fimbrial type-4 assembly signal peptide protein [Nitrosomonas europaea ATCC 19718] gi|30181034|emb|CAD86224.1| probable pilQ; fimbrial type-4 assembly signal peptide protein [Nitrosomonas europaea ATCC 19718] Length = 718 Score = 182 bits (463), Expect = 9e-44, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 106/261 (40%), Gaps = 39/261 (14%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------SGPSKSFAADFGGKFVS 240 QV ++ I E + +G + + ++ SG + + GG Sbjct: 449 RQVMIETRIVEATDTFSRNLGARFGVQNATRIGSETNGRRLGISGNLGNSSGLAGGTVSP 508 Query: 241 EGGD----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 GGD S+ + + L ALE + R +A P L Sbjct: 509 SGGDNLNVNLPAAALAGVAGGPAALGLSLIKINNGTLINLELSALESDSKGRVIASPRLV 568 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + AS G + ++T+S + + + L TP + I +++Q V++ Sbjct: 569 TANRVEASIEQGTEIPFQTISVTRP--QIQFKKAVLGLKVTPQITPDDNIIMKLQ--VNQ 624 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G N P+ ++ T V + +GGT+V+ G+ + +Q + +PLL IP+LG LF Sbjct: 625 DTRGENTPAGPAIDTKQIVTEVLVENGGTVVIGGIFEQVEKQDRNQVPLLGDIPVLGNLF 684 Query: 399 RNSRFNREETEIFIAATPFLV 419 +N+ ++ E+ I TP ++ Sbjct: 685 KNTAKRDDKRELLIFVTPRIL 705 >gi|2506491|sp|P31701|GSPD_PECCC RecName: Full=General secretion pathway protein D; AltName: Full=Pectic enzymes secretion protein outD; Flags: Precursor Length = 650 Score = 182 bits (463), Expect = 9e-44, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 118/311 (37%), Gaps = 36/311 (11%) Query: 146 VLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYAN----------SSSKKVMNLLNIAGED 194 VL G+ +IQ D Q A+ +S Q + ++V+ L+I Sbjct: 276 VLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP- 334 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKF 238 QV ++ IAEV+ +G Q + + + G Sbjct: 335 QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAA 394 Query: 239 VSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 + G F+ + + ++ ++ AL + LA P++ + A+F G + Sbjct: 395 TTALGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLA 454 Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPS 350 +T S +V G+ L P + + L I+ EVS + + Sbjct: 455 GSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLGAT 514 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+V+ GLL + +PLL IP+LG LFR++ ++ + Sbjct: 515 FNTRTVNNAVLVSSGDTVVVGGLLDKSTNESANKVPLLGDIPVLGYLFRSNSTETKKRNL 574 Query: 411 FIAATPFLVKP 421 + P +++ Sbjct: 575 MLFIRPSIIRD 585 >gi|95928759|ref|ZP_01311505.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] gi|95135104|gb|EAT16757.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] Length = 727 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 73/322 (22%), Positives = 125/322 (38%), Gaps = 29/322 (9%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 +DI LE T + I V DT + ++ + +Q V+L E + Sbjct: 417 TKDIKKLEET------RTEIFVINYKDTEAIEDVIDDVLSNQGEVQLIEGSKKIMVNDIP 470 Query: 177 AN-SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------- 228 + + ++N L+ QV ++ I E + G + S Sbjct: 471 SKLEEIRMLINQLDEP-VKQVLIEARIVEADTSAEQTFGIHWGFEFDNDSGSSGGGIGSS 529 Query: 229 --SFAADFGGKFVSEGGDFSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLT 278 + GG F++ G LD + L ALE + + ++ P + Sbjct: 530 LDNAVVGLGGNFITPTSATDGLGTALTFGRVGLDTIVLDLQLSALESSGGGKVISSPKVM 589 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A+ G++A G + YKT S + T+ + L TP + I L I S Sbjct: 590 ALDGETARIGQGTEIPYKTTSDN--GTTTEFKKAELALEVTPLINPDNTILLEILATNSS 647 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P GV D + ++A+T + L +G T V+ G+ ++ Q G P L +P +G LF Sbjct: 648 P--GVAYTDGVAINTKEAETKLLLKNGETTVIGGIYTENEQNSDSGTPYLKDLPFIGNLF 705 Query: 399 RNSRFNREETEIFIAATPFLVK 420 + + + TE+ I TP +V Sbjct: 706 KYKTSSNDRTELLIFLTPHIVD 727 >gi|107102654|ref|ZP_01366572.1| hypothetical protein PaerPA_01003719 [Pseudomonas aeruginosa PACS2] Length = 658 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 117/266 (43%), Gaps = 23/266 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+ G Sbjct: 345 NALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSI 403 Query: 239 VS------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + D ++ G+ SF ++ AL T L+ P+L + Q A Sbjct: 404 GTLLQSLESNKAPESIPDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAE 462 Query: 287 FTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 G ++T S +T + T+V D GV L TP + + L I+ E+S Sbjct: 463 ILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISAL 522 Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 P R +T+ +G IV+ GL++DD+ Q + +PLL IP+LG L Sbjct: 523 LPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLLGRL 582 Query: 398 FRNSRFNREETEIFIAATPFLVKPVA 423 FR+++ + + + P +V+ A Sbjct: 583 FRSTKDTHTKRNLMVFLRPTVVRDSA 608 >gi|152998702|ref|YP_001364383.1| general secretion pathway protein D [Shewanella baltica OS185] gi|151363320|gb|ABS06320.1| general secretion pathway protein D [Shewanella baltica OS185] Length = 704 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 66/282 (23%), Positives = 110/282 (39%), Gaps = 45/282 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 337 ESVINQLDIR-RAQVLVEAIIVEVAEGDSVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGV 395 Query: 236 -------GKFVSEGGDFSVKGV------------------------LDRFSFETVLHALE 264 G F++ V G + F ++ A+ Sbjct: 396 WQAQDKEGTFITNPSTGQVIGQNPSTKGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVS 455 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFT 319 T LA P++T + Q ASF G + T S+++ +V + GV L Sbjct: 456 SDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 515 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + L I+ EVS + N G S+ R+ TTV SG +VL GL+ +++Q Sbjct: 516 PQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEVQ 573 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +P L IPILG LF++S + + + I P +++ Sbjct: 574 ESVQKVPFLGDIPILGHLFKSSSSKKTKKNLMIFIKPTIIRD 615 >gi|225850118|ref|YP_002730352.1| fimbrial assembly protein PilQ [Persephonella marina EX-H1] gi|225646446|gb|ACO04632.1| fimbrial assembly protein PilQ [Persephonella marina EX-H1] Length = 608 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 91/242 (37%), Gaps = 15/242 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------VS 240 Q+ ++ I ++ + +G Q S + + G V Sbjct: 365 PYQIAIEARIVQIESSYKRDLGIQWGFAASGGAGNIGYGVTTGTATGYMFDFPAGNVDVG 424 Query: 241 EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-- 297 +G S+ V S + L ALE+ R L+ P + I G+ A + G + Y T Sbjct: 425 KGASMSIGIVRGLTTSLDIQLSALEQIGKSRILSRPKVITIDGEGAEISQGIEVPYSTFG 484 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 + V + L+ P G I + I+ P G P + Sbjct: 485 AAGGAAIARVQFKKALLKLNVIPRTTLDGNIIMNIELTQDVPDFGRAVNGQPPINTKSIT 544 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + V G TIV+ G+L+ Q+ + G+P L +P+ G LF+N N E+ I TP Sbjct: 545 SKVIAKDGTTIVIGGILEKTEQETENGVPGLRNVPLFGWLFKNKGINTTNKELLIFITPK 604 Query: 418 LV 419 ++ Sbjct: 605 II 606 >gi|71280718|ref|YP_271238.1| general secretion pathway protein D [Colwellia psychrerythraea 34H] gi|71146458|gb|AAZ26931.1| general secretion pathway protein D [Colwellia psychrerythraea 34H] Length = 697 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 83/423 (19%), Positives = 159/423 (37%), Gaps = 75/423 (17%) Query: 91 GKNVGQAN-----VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVE 139 G GQ ++ +++ ++ +A L L + + ++ Sbjct: 218 GGKAGQPTFLIPKIVADDRSNSVIVSGEVKARERVARLVKRLDSELESNGNTRVYYLKYS 277 Query: 140 MVSDTV-VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS---------------KK 183 D V VL G+ +I + + + A+ S+ + Sbjct: 278 KAEDLVKVLQGVSDSIASETTTAKTKTRSSKKRDVSIEAHESTNALVITAQPDMLRSLEA 337 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFG--- 235 V+ L++ QV ++ I EV +G Q T ++GP+ + G Sbjct: 338 VIRQLDVR-RAQVLVEAIIVEVFESDGVSLGVQWYNEAGGFTQFTNGPASISSVAAGVQA 396 Query: 236 --------------------GKFVSEGGDFSVKGV-----------LDRFSFETVLHALE 264 + S GD+S+ + + + ++ A+ Sbjct: 397 AEGEPATKVTTIDANGNPVISENPSTDGDYSILAQVLGNVSGMMFGIAKNDWGAIVSAVS 456 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFT 319 T LA P++T + + A F G + T S++ +V + G+ L T Sbjct: 457 SDTNSNILATPSITTLDNEEAYFIVGQEVPIITGSATGSNNANPFQTVDRQEVGIKLRVT 516 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P V + L I+ EVS V G D+ S R+ TTV SG T++L GL+ +D+Q Sbjct: 517 PQVNEGNAVQLIIEQEVSS-VSGTTGVDI-SINKREIKTTVMADSGDTVILGGLIDEDVQ 574 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVED 438 + + +P+L IPI+G LF+++ + + + + +V+ A M ++S +Y D Sbjct: 575 ESVQKVPILGDIPIIGHLFKSTSNSTRKRNLMVFLRATIVRDSALMTEISESKYNYIRAD 634 Query: 439 DAK 441 + Sbjct: 635 QIR 637 >gi|294788170|ref|ZP_06753413.1| type IV pilus secretin PilQ [Simonsiella muelleri ATCC 29453] gi|294483601|gb|EFG31285.1| type IV pilus secretin PilQ [Simonsiella muelleri ATCC 29453] Length = 700 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 54/296 (18%), Positives = 113/296 (38%), Gaps = 27/296 (9%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G + T + S R + T + + ++++ L++ QV ++ I E Sbjct: 401 SGSLLTKRGSARVDPATNTLIVKDTST--VIQEFQRLIEELDVP-ARQVMVETRIVEADV 457 Query: 208 DILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF---------- 256 + + +G + +G ++ + V G V + + Sbjct: 458 SVGRDLGIKLGYARAGRTGVGNTYNNALNNRNVGVGASTGVIDISPNINLPTVATATTAL 517 Query: 257 -----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 L A+E +T++ P + + A G Q Y+T + G+ Sbjct: 518 GLIRSFGSSALSLELSAMEEENRSKTISSPRVLTQDRKEAEIRQGTQIPYQT-RDADGSY 576 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364 + D + + TP + I L + +NA P+ V++ T + + Sbjct: 577 TTAFKDAVLSMKVTPRITPDNNIILDVTINKDNVDNTRINADGEPAISVKQVKTQAMVEN 636 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GGT+V+ G+ ++ I +PLL +P+LG LF++ N + +E+ TP +++ Sbjct: 637 GGTLVVGGVYQEQISNNISKVPLLGDVPVLGNLFKSKSRNHQRSEVLFFITPRIIE 692 >gi|224370094|ref|YP_002604258.1| GspD2 [Desulfobacterium autotrophicum HRM2] gi|223692811|gb|ACN16094.1| GspD2 [Desulfobacterium autotrophicum HRM2] Length = 761 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 63/268 (23%), Positives = 107/268 (39%), Gaps = 15/268 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 V+ L++ QV ++VT+AEV + +G + + + G Sbjct: 489 DVLKRLDVL-PRQVLIEVTLAEVTLNDSSSLGVEWTFIKDGGSVADGLIQGTLGSTNVLQ 547 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 +F + + L AL + L+ P++ A + A + T Sbjct: 548 YNFG-----NTQKWAATLTALASKGDVNILSSPSVLASDNKEAKIDISTEVPVVTTEYKY 602 Query: 303 G-------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV 353 G AT++ + GV+L TP + G + + I EVSE V AG PS+ Sbjct: 603 GTDGDDMLATNIQYRNTGVILTVTPHINERGLVSMEINQEVSEQADAVLAGGQEYPSFYK 662 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R TT+ + TI + GL++ + GIPLL+++P LF + E+ E+ I Sbjct: 663 RSVQTTLTVNDNQTIAIGGLMRKKEEDSSAGIPLLNQLPFFKYLFGKTAGGNEKNELIIL 722 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 TP +V + D + V + K Sbjct: 723 ITPRVVSDLDDIDQVTNEFRQRVGNTGK 750 >gi|208811320|ref|ZP_03253080.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4206] gi|208817430|ref|ZP_03258459.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4045] gi|208823379|ref|ZP_03263696.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4042] gi|209395621|ref|YP_002268498.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4115] gi|217329885|ref|ZP_03445960.1| general secretion pathway protein D [Escherichia coli O157:H7 str. TW14588] gi|208729950|gb|EDZ79167.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4206] gi|208730607|gb|EDZ79306.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4045] gi|208736974|gb|EDZ84659.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4042] gi|209157076|gb|ACI34510.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4115] gi|217317116|gb|EEC25549.1| general secretion pathway protein D [Escherichia coli O157:H7 str. TW14588] Length = 655 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 107/297 (36%), Gaps = 30/297 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+I QV ++ IAE++ +G Q + S + Sbjct: 334 ENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTGLPITTMVQTR 392 Query: 242 GGDF-------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + + + ++ +L AL ++ LA P++ + A+F Sbjct: 393 QNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFN 452 Query: 289 SGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---I 341 G + +T S +V G+ L P + + L I+ EVS + Sbjct: 453 VGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAV 512 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 ++ R + + +G T+V+ GLL I+ + +PLL IP+LG LFR Sbjct: 513 ATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAK 572 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 + + + P +++ D + K FN+ KE + Sbjct: 573 SEQTAKRNLMLFIRPTIIR---------ERDGFRHASAEKYQSFNQEQVQSRGKETT 620 >gi|218890695|ref|YP_002439559.1| general secretion pathway protein D [Pseudomonas aeruginosa LESB58] gi|254236075|ref|ZP_04929398.1| general secretion pathway protein D [Pseudomonas aeruginosa C3719] gi|254241802|ref|ZP_04935124.1| general secretion pathway protein D [Pseudomonas aeruginosa 2192] gi|126168006|gb|EAZ53517.1| general secretion pathway protein D [Pseudomonas aeruginosa C3719] gi|126195180|gb|EAZ59243.1| general secretion pathway protein D [Pseudomonas aeruginosa 2192] gi|218770918|emb|CAW26683.1| general secretion pathway protein D [Pseudomonas aeruginosa LESB58] Length = 658 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 117/266 (43%), Gaps = 23/266 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+ G Sbjct: 345 NALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSI 403 Query: 239 VS------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + D ++ G+ SF ++ AL T L+ P+L + Q A Sbjct: 404 GTLLQSLESNKAPESIPDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAE 462 Query: 287 FTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 G ++T S +T + T+V D GV L TP + + L I+ E+S Sbjct: 463 ILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISAL 522 Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 P R +T+ +G IV+ GL++DD+ Q + +PLL IP+LG L Sbjct: 523 LPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLLGRL 582 Query: 398 FRNSRFNREETEIFIAATPFLVKPVA 423 FR+++ + + + P +V+ A Sbjct: 583 FRSTKDTHTKRNLMVFLRPTVVRDSA 608 >gi|149926612|ref|ZP_01914872.1| pili assembly protein PilQ [Limnobacter sp. MED105] gi|149824541|gb|EDM83757.1| pili assembly protein PilQ [Limnobacter sp. MED105] Length = 681 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 12/244 (4%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSE 241 ++N L+ QV ++ + + + +G + + + P D G FV+ Sbjct: 439 IVNGLDKP-VKQVMIEARVVLADTSVSRDLGIRLRALSARADPGFDEVGDQFGSGNFVNT 497 Query: 242 G------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G +++ L ALE +RT++ P + + + A G + Y Sbjct: 498 GVENATNLGYTLFNANSTRLINLQLRALELENKVRTVSNPRVITSNKEPALIEQGTEIPY 557 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + +SS GAT+ + + L TP + G + L + +V++ IG+ + P+ R+ Sbjct: 558 QIATSS-GATATEFKEANLKLAVTPQIAPDGTVLLDV--DVAKDSIGIETSNGPAIDTRR 614 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V + GGT+VL G+ ++D L + P L IP LG LFR +R E+ I T Sbjct: 615 VKTKVLVSDGGTVVLGGIFEEDDNVLNDKTPFLGDIPGLGVLFRGKNESRRRAELLIFLT 674 Query: 416 PFLV 419 P ++ Sbjct: 675 PVVL 678 >gi|193734249|gb|ACF19898.1| PilQ [Kingella kingae] Length = 700 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 103/272 (37%), Gaps = 26/272 (9%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------- 217 NQ +++++ L++ + QV ++ I E + + +G + Sbjct: 422 TDNQSVIQKFERLIDELDVPAK-QVMVEARIVEAADGVSRSLGVKFGARRNGATSWGGDW 480 Query: 218 ---------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 S +S +F + S SV + L A+E Sbjct: 481 NNSIALNNRSTNSGTSTGGVAFNPNVNLPVASATSSISVIHSWAAGALGLELSAMETENL 540 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 +T++ P + + A G Q Y T SS G +S D + L TP + +I Sbjct: 541 TKTISTPRVLTQDRKEAEIRQGTQIPY-TTRSSDGDSSTAFKDAVLSLKVTPRITPDSKI 599 Query: 329 GLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L I EP VNA P R T + G T+V+ G+ ++ + +PL Sbjct: 600 ILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATLVVGGIYQEQMANNVSKVPL 659 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L IP+LG LF++ +R E+ TP ++ Sbjct: 660 LGDIPVLGNLFKSRSRSRSRNELLFFITPRIM 691 >gi|126207688|ref|YP_001052913.1| type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae L20] gi|165975656|ref|YP_001651249.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149472|ref|YP_001967997.1| type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307258421|ref|ZP_07540162.1| hypothetical protein appser11_2240 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|126096480|gb|ABN73308.1| type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875757|gb|ABY68805.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914603|gb|ACE60855.1| type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306867605|gb|EFM99452.1| hypothetical protein appser11_2240 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 432 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 14/251 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFV 239 +++ L+ E Q+ ++ I + + L+++G + I ++G + S A+ Sbjct: 166 QLIRNLDKPTE-QIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGSLEANGLPNTN 224 Query: 240 SEGGDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 +F V ++ + L ALE+ + +A P L + + AS G Sbjct: 225 RLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQG 284 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMP 349 + Y + ++ + + L TP + + +I L + + P G + Sbjct: 285 TEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPNSTGSTLQGLV 344 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF +S + E Sbjct: 345 TIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFSHSSDKISKRE 404 Query: 410 IFIAATPFLVK 420 + I TP++VK Sbjct: 405 LVIFVTPYIVK 415 >gi|15598301|ref|NP_251795.1| general secretion pathway protein D [Pseudomonas aeruginosa PAO1] gi|544439|sp|P35818|GSPD_PSEAE RecName: Full=General secretion pathway protein D; Flags: Precursor gi|9949215|gb|AAG06493.1|AE004734_11 general secretion pathway protein D [Pseudomonas aeruginosa PAO1] gi|431185|emb|CAA48582.1| XcpQ [Pseudomonas aeruginosa PAO1] Length = 658 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 117/266 (43%), Gaps = 23/266 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+ G Sbjct: 345 NALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSI 403 Query: 239 VS------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + D ++ G+ SF ++ AL T L+ P+L + Q A Sbjct: 404 GTLLQSLESNKAPESIPDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAE 462 Query: 287 FTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 G ++T S +T + T+V D GV L TP + + L I+ E+S Sbjct: 463 ILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISAL 522 Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 P R +T+ +G IV+ GL++DD+ Q + +PLL IP+LG L Sbjct: 523 LPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLLGRL 582 Query: 398 FRNSRFNREETEIFIAATPFLVKPVA 423 FR+++ + + + P +V+ A Sbjct: 583 FRSTKDTHTKRNLMVFLRPTVVRDSA 608 >gi|317494398|ref|ZP_07952812.1| type IV pilus secretin PilQ [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917648|gb|EFV38993.1| type IV pilus secretin PilQ [Enterobacteriaceae bacterium 9_2_54FAA] Length = 437 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 13/247 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAADFGGKFVSEGGD 244 QV L I + R+ L ++G + GS S F + S Sbjct: 191 QVQLTAHIVTINRESLNELGVRWGTAGSDETTSSDSDSSNFRLNQFNMGLPAEGRSFNAG 250 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + + R + + + +A P L A + Q+AS G + Y+ S ++G+ Sbjct: 251 FQIARIGGRLLELELSALEQEDN-VEIIASPHLMATNLQTASIKQGTEIPYEVSSGASGS 309 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVEL 362 TS+ + + + TP V+ G+I L +Q + P + GD + ++ T V L Sbjct: 310 TSIEFKEAVLGMEVTPRVMRNGKITLTLQITQNMPGRSIKQGDGEALAIDKQEIKTQVTL 369 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G T++L G+ + K +P L IP+LGALFR+S + E+ I TP LVK Sbjct: 370 SDGDTVILGGIFQRQTTHGKTQVPKLGDIPLLGALFRDSTDASKRRELVIFITPKLVKTE 429 Query: 423 AMRDLSR 429 L R Sbjct: 430 TPSSLLR 436 >gi|320352793|ref|YP_004194132.1| general secretion pathway protein D [Desulfobulbus propionicus DSM 2032] gi|320121295|gb|ADW16841.1| general secretion pathway protein D [Desulfobulbus propionicus DSM 2032] Length = 752 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 67/306 (21%), Positives = 117/306 (38%), Gaps = 29/306 (9%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK------VMNLLNIAGEDQVTLKVTI 202 G + + + + + ++ V+ L+I V L+ I Sbjct: 320 GKASSAPSAPAISKEVKVVADKETNALIITGPREEYEVVEGVIKKLDIP-RRMVYLEALI 378 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSVKGVLDRF---- 254 EV+ IG Q + S S A + + + G L Sbjct: 379 MEVKVSKDFSIGVQWANADGSVVGGFSGNASSPYNMLKQMTTSPGSLPAGFTLGVLEEGI 438 Query: 255 --------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + V++A + + +A P + + AS G Y T ++T A Sbjct: 439 KIGDVVFPNLGAVVNAYKSDDDVNVIATPQILTTDNKKASIKVGENVPYITSKNTTDAEQ 498 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 T+ D L TP V + L I EV + A D PS R A+TTV + Sbjct: 499 DYTNYEYKDVATSLTITPQVNQAEVVRLEIGVEV-IKLKNTEATDTPSTFTRTAETTVVV 557 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-P 421 + T+V+ G++ D + +P+L IP+LG +F++ ++E+T ++I TP +V+ P Sbjct: 558 HNEQTVVIGGMIGQDTTSGEYKVPVLGDIPVLGWMFKSRSNSQEKTNLYIFITPHIVENP 617 Query: 422 VAMRDL 427 + DL Sbjct: 618 AEIADL 623 >gi|313108415|ref|ZP_07794431.1| general secretion pathway protein D [Pseudomonas aeruginosa 39016] gi|310880933|gb|EFQ39527.1| general secretion pathway protein D [Pseudomonas aeruginosa 39016] Length = 658 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 23/266 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+ G Sbjct: 345 NALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSI 403 Query: 239 VS------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + D ++ G+ SF ++ AL T L+ P+L + Q A Sbjct: 404 GTLLQSLESNKAPESIPDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAE 462 Query: 287 FTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 G ++T S +T + T+V D GV L TP + + L I+ E+S Sbjct: 463 ILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISAL 522 Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 P R +T+ +G IV+ GL++DD+ Q + +PLL IP LG L Sbjct: 523 LPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFLGRL 582 Query: 398 FRNSRFNREETEIFIAATPFLVKPVA 423 FR+++ + + + P +V+ A Sbjct: 583 FRSTKDTHTKRNLMVFLRPTVVRDSA 608 >gi|186474451|ref|YP_001863422.1| general secretion pathway protein D [Burkholderia phymatum STM815] gi|184198410|gb|ACC76372.1| general secretion pathway protein D [Burkholderia phymatum STM815] Length = 717 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 114/319 (35%), Gaps = 59/319 (18%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--AADFGGKFV 239 + V++ L+ QV ++ I E+ +G Q S+G + +++F Sbjct: 374 RSVIDQLDSR-RAQVYIEALIVELSATSSANLGIQWQGALLSNGGNNGLYGSSNFNSNGS 432 Query: 240 SEGGDFSVKG------------------------------VLDRFSFETVLHALERATAI 269 + + +G + F +L AL +++ Sbjct: 433 QGIVNLTAQGAIIANNPAAALATTGTNLLNNGLNVGLLHRFGNVFGLGGLLQALSQSSDA 492 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----------TSVTTHDYGVVLHFT 319 L+ P L + + A G T S +T + D G+VLH Sbjct: 493 NILSTPNLITLDNEEAKIVVGSNVPVVTGSYATPTANAATSVTAFNTFDRQDVGIVLHVK 552 Query: 320 PTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + G I L+I +E S N + R +TV G IVL GL++D+ Sbjct: 553 PQITDGGIIKLQIYSEDSSVDPTSTNNPGGVTIIKRSVQSTVLSDDGEIIVLGGLMQDNY 612 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 +PLL +P +G LFR+ +R +T + + P ++ D Sbjct: 613 SNGNSKVPLLGDVPWIGQLFRSEEKSRTKTNLMVFLRPVIIND---------------WD 657 Query: 439 DAKAFFFNRVNKIYGPKEA 457 A+A NR + I G + A Sbjct: 658 TAQAVTSNRYDYIQGVQGA 676 >gi|332973070|gb|EGK11007.1| type IV pilus biogenesis protein PilQ [Kingella kingae ATCC 23330] Length = 700 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 103/272 (37%), Gaps = 26/272 (9%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------- 217 NQ +++++ L++ + QV ++ I E + + +G + Sbjct: 422 TDNQSVIQKFERLIDELDVPAK-QVMVEARIVEAADGVSRSLGVKFGARRNGATSWGGDW 480 Query: 218 ---------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 S +S +F + S SV + L A+E Sbjct: 481 NNSIALNNRSTNSGTSTGGVAFNPNVNLPVASATSSISVIHSWAAGALGLELSAMETENL 540 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 +T++ P + + A G Q Y T SS G +S D + L TP + +I Sbjct: 541 TKTISTPRVLTQDRKEAEIRQGTQIPY-TTRSSDGDSSTAFKDAVLSLKVTPRITPDSKI 599 Query: 329 GLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L I EP VNA P R T + G T+V+ G+ ++ + +PL Sbjct: 600 ILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATLVVGGIYQEQMANNVSKVPL 659 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L IP+LG LF++ +R E+ TP ++ Sbjct: 660 LGDIPVLGNLFKSRSRSRSRNELLFFITPRIM 691 >gi|261250571|ref|ZP_05943146.1| type II secretory pathway component EpsD [Vibrio orientalis CIP 102891] gi|260939140|gb|EEX95127.1| type II secretory pathway component EpsD [Vibrio orientalis CIP 102891] Length = 654 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 60/310 (19%), Positives = 111/310 (35%), Gaps = 51/310 (16%) Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGED------QVTLKVTIAEVRRDILKQIGFQHS-- 218 + G N ++ +MN L QV ++ I E+ +G Q Sbjct: 290 IAAHPGTNALVLTAPPDIMNALQDVIAQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNL 349 Query: 219 -----ITGSSSGPSKSFA--------------------------------ADFGGKFVSE 241 I S++G S D+ + Sbjct: 350 ETGAMIQYSNTGASVGQVMVGLEEAKDTTTTTAVYDSDGKFLRNETTTEEGDYSTLASAL 409 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + ++ A+ + L+ P++T + ASF G + T S+S Sbjct: 410 GSVNGAALSIAMGDWTALISAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTS 469 Query: 302 TGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 +V + G+ L P + + L I+ EVS V+G N + R+ Sbjct: 470 GSNNENPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQL 528 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T+V + G IVL GL+ + + + +P+L IP LG LF+++ E+ + + P Sbjct: 529 NTSVMVEDGQMIVLGGLIDERALESESKVPILGDIPYLGHLFKSTSTQVEKKNLMVFIKP 588 Query: 417 FLVKPVAMRD 426 +++ D Sbjct: 589 TIIRDGMTAD 598 >gi|28896907|ref|NP_796512.1| general secretion pathway protein D [Vibrio parahaemolyticus RIMD 2210633] gi|260365906|ref|ZP_05778400.1| general secretion pathway protein D [Vibrio parahaemolyticus K5030] gi|260877807|ref|ZP_05890162.1| general secretion pathway protein D [Vibrio parahaemolyticus AN-5034] gi|260895544|ref|ZP_05904040.1| general secretion pathway protein D [Vibrio parahaemolyticus Peru-466] gi|260902568|ref|ZP_05910963.1| general secretion pathway protein D [Vibrio parahaemolyticus AQ4037] gi|28805115|dbj|BAC58396.1| general secretion pathway protein D precursor [Vibrio parahaemolyticus RIMD 2210633] gi|308088533|gb|EFO38228.1| general secretion pathway protein D [Vibrio parahaemolyticus Peru-466] gi|308089966|gb|EFO39661.1| general secretion pathway protein D [Vibrio parahaemolyticus AN-5034] gi|308109694|gb|EFO47234.1| general secretion pathway protein D [Vibrio parahaemolyticus AQ4037] gi|308113427|gb|EFO50967.1| general secretion pathway protein D [Vibrio parahaemolyticus K5030] Length = 675 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 125/341 (36%), Gaps = 62/341 (18%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNI 190 VL G+ +Q ++A + + + A+ ++ V++ L+I Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGDVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------ 238 QV ++ I E+ +G Q + + A G+ Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGSLETGAVIQYGNAGAPIGQVMVGLEEAKDTVE 399 Query: 239 -----------------VSEGGDFSVKGV-----------LDRFSFETVLHALERATAIR 270 + GD+S + + ++ A+ + Sbjct: 400 KKPIRDSDTGAIKYYEETTTKGDYSTLASALKNVNGAAMSIVMGDWTALVSAVASDSNSN 459 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSP 325 L+ P++T + ASF G + T S++ +V + G+ L P + Sbjct: 460 ILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEG 519 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + + + + Sbjct: 520 DSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKV 578 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 PLL IP+LG LF+++ ++ + + P +++ D Sbjct: 579 PLLGDIPVLGHLFKSTSTQTQKRNLMVFIKPTIIRDGMTAD 619 >gi|116051101|ref|YP_790068.1| general secretion pathway protein D [Pseudomonas aeruginosa UCBPP-PA14] gi|115586322|gb|ABJ12337.1| general secretion pathway protein D [Pseudomonas aeruginosa UCBPP-PA14] Length = 658 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 23/266 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + ++ L++ QV ++ I E+ DI +G Q +I G +K+ A+ G Sbjct: 345 NALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANTGLSI 403 Query: 239 VS------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + D ++ G+ SF ++ AL T L+ P+L + Q A Sbjct: 404 GTLLQSLESNKAPESIPDGAIVGI-GSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAE 462 Query: 287 FTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE- 338 G ++T S +T + T+V D GV L TP + + L I+ E+S Sbjct: 463 ILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISAL 522 Query: 339 -PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 P R +T+ +G IV+ GL++DD+ Q + +PLL IP LG L Sbjct: 523 LPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFLGRL 582 Query: 398 FRNSRFNREETEIFIAATPFLVKPVA 423 FR+++ + + + P +V+ A Sbjct: 583 FRSTKDTHTKRNLMVFLRPTVVRDSA 608 >gi|163751006|ref|ZP_02158238.1| MSHA biogenesis protein MshL [Shewanella benthica KT99] gi|161329296|gb|EDQ00294.1| MSHA biogenesis protein MshL [Shewanella benthica KT99] Length = 560 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 108/264 (40%), Gaps = 25/264 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-- 250 QV ++ I EV Q G ++ G F GG +S+ + GV Sbjct: 280 RQVIIEAKILEVTLSDGYQQGINWQNVLGHVGDTDIEFGTSTGGGSLSDQITSVIGGVTS 339 Query: 251 --LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GAT 305 +F T++ L+ + L+ P +T ++ Q A G + T SST G T Sbjct: 340 LKFSGTNFSTMISLLDTQGDVDVLSSPRVTVLNNQKAVIKVGTDEYFVTNVSSTTISGIT 399 Query: 306 SVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------ 352 +TT + G+ L TP + G + L I V + + Sbjct: 400 PITTPEVELTPFFSGIALDVTPQIDGDGNVILHIHPSVINIKEQIKTIKISGSTLELPLA 459 Query: 353 ---VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R++DT + SG +V+ GL+K + +L +PLL IP +G LF N + ++TE Sbjct: 460 RSDIRESDTVIMARSGDVVVIGGLMKSENIELISKVPLLGDIPFIGELFTNRAKSLKKTE 519 Query: 410 IFIAATPFLVK-PVAMRDLSRPDD 432 + I P +V ++L R D Sbjct: 520 LVILLKPTVVGVDTWKKELQRSKD 543 >gi|294339205|emb|CAZ87559.1| Putative Type IV pilus biogenesis secretin PilQ [Thiomonas sp. 3As] Length = 746 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 69/351 (19%), Positives = 126/351 (35%), Gaps = 49/351 (13%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY--- 176 A + L V+L G+ + + R + T L+ NQ Sbjct: 397 AATVVAMLTGAAGGVQSGTTATPSPVLLPGLSSSAAPTSRILSPRGTVLADPRTNQIFVT 456 Query: 177 -ANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSS------SGPS 227 S ++V L+ + QV ++ I E + +G + ++ + P Sbjct: 457 DIPSKLEEVAQLIAKIDKPVRQVMIEARIVEASDQFGRSLGVKLGFLNNNLPGTGGNTPG 516 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSF------------------------------- 256 S + D+ G G + + + F Sbjct: 517 VSVSGDYLGVSQQTGQNNATGATVTDSQFVNLPAFGLAGSLLAGATPSSLGISLFNAAAN 576 Query: 257 ---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 L A+E + ++ P + A+ G + Y+ +SS GAT+VT Sbjct: 577 RFINLELSAMEADGKGKIISSPRVITADLSKATIEQGTEIPYQQATSS-GATAVTFKKAV 635 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L TP + G + + ++ P G + +PS T V++ +GGT+VL G+ Sbjct: 636 LSLDVTPQITPDGNVIMNVEIHKDSP--GASTAGVPSINTNTVATQVQVENGGTVVLGGI 693 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 Q + +PLL IP+LG LF+N+ + E+ + TP +V + Sbjct: 694 YTSQEQNQTDKVPLLGDIPVLGNLFKNNSKMYNKNELMVFLTPKIVTSADL 744 >gi|295678175|ref|YP_003606699.1| general secretion pathway protein D [Burkholderia sp. CCGE1002] gi|295438018|gb|ADG17188.1| general secretion pathway protein D [Burkholderia sp. CCGE1002] Length = 811 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 67/316 (21%), Positives = 113/316 (35%), Gaps = 56/316 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ A QV ++ I E+ + +G Q + +S + ++ Sbjct: 399 RAVIDQLD-ARRAQVYIEALIVELNSNTSGNLGIQWQVANNSLFAGTNLQTGSSNSIINL 457 Query: 242 GGDFS----------------------------VKGVLDRFSFETVLHALERATAIRTLA 273 + + + +L AL + L+ Sbjct: 458 TAAAAAAGATGATGGAALVSGLSGLQQGLNVGWIHNIFGVQGLGALLQALSQTADANVLS 517 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSP 325 P L + + A G +T S S + T D G+ LH P + Sbjct: 518 TPNLITLDNEEAKIIVGTNVPIQTGSYSNLTSGTTSAAFNTFDRVDVGLTLHVKPQITDG 577 Query: 326 GRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 G + L + TE S V G N P + R +TV +G IVL GL++D+ Q Sbjct: 578 GILKLLLYTEDSAIVNGTNNAATNPAGPEFTKRSIQSTVLCDNGEIIVLGGLMQDNYQVS 637 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL IP LG LFR+ + R +T + + P ++ + D + Sbjct: 638 NSKVPLLGDIPWLGQLFRSEQKTRNKTNLMVFLRPVIL---------------ADRDTTQ 682 Query: 442 AFFFNRVNKIYGPKEA 457 A NR + I G + A Sbjct: 683 AVTANRYDYIQGVQGA 698 >gi|303229539|ref|ZP_07316327.1| bacterial type II and III secretion system protein [Veillonella atypica ACS-134-V-Col7a] gi|302515664|gb|EFL57618.1| bacterial type II and III secretion system protein [Veillonella atypica ACS-134-V-Col7a] Length = 399 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 142/348 (40%), Gaps = 42/348 (12%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER---DIAHLEMTLRRFIADSNI 136 ++H MY F Q V + GH G + +++E LE ++ + + Sbjct: 86 MLHHLGDMYHFDIQDDQGVVTVTGHSGAKEHRHVVVVEPKMASSTSLESVIKTVVPNGKF 145 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 V ++ +VL+ + ++ + + QV Sbjct: 146 AVHKETNQIVLNVTGDEEKGVNSIIQSVDRDMK-------------------------QV 180 Query: 197 TLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 L+ TI + K+ GF+ S TG + S+ A GK G + Sbjct: 181 RLEATIMAMEHSYTKETGFRWSWLSLTGHGKDKTNSYGAISFGKAPD--------GEAYK 232 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHD 311 F + L LE + +A P++ A++G++A G + S S G S+ + Sbjct: 233 FFVKPELSLLETSGKAVVIATPSIMALNGEAAHILIGERIPVIEESISNGERKRSIHYEE 292 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G+ L +TP V G I I+ EVS P++ V+ R+A T V L G +V+ Sbjct: 293 VGIKLDYTPVVTKNGTIDTSIRAEVSSPIM-VSEMKSYKITTRQAQTRVRLQPGEVLVIG 351 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GL+ + Q+ E IP+L IP+LG LFR+SR ++ E+ I +V Sbjct: 352 GLMDNRDQKQIEKIPILGDIPLLGKLFRHSRKTKDSVEMVILVKATVV 399 >gi|255658549|ref|ZP_05403958.1| putative type IV pili biogenesis protein PilQ [Mitsuokella multacida DSM 20544] gi|260849353|gb|EEX69360.1| putative type IV pili biogenesis protein PilQ [Mitsuokella multacida DSM 20544] Length = 430 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 94/424 (22%), Positives = 161/424 (37%), Gaps = 58/424 (13%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT----- 86 A AA I + VE G + ++L + + +V D + A V Sbjct: 23 AEAAPIEMQVVE---------GDVRSVLLSLARTAHENIVLDDSVAGTVTLHATEEPAKL 73 Query: 87 ---------MYLFGKNVGQANVILIGHDGKQMLNLDI--LIERDIAHLEMTLRRFIADSN 135 + L G ++ + ++ + + D A L + Sbjct: 74 LRMIAASKGLVLI--KEGSTYLVTTMPRADALRSVHVYPVRHADPADLAHA-------AE 124 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 + ++ V+ G + + L + AN + KV+ L+ Q Sbjct: 125 LSLKSVAGDKTADGQETGTARRVLVDSATNSVLFYGTAAEAANVA--KVVQQLD-RKPRQ 181 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV--------SEGGDFSV 247 V+L+ + + +D K++G + + P G D +V Sbjct: 182 VSLEAKVLALSKDASKKLGVEWQWSSLPQYPDFETTYRHKGSANEVQEKEIKRHTQDGTV 241 Query: 248 KGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G++ F + + AL + LA P +T + G+ A GG+ T Sbjct: 242 PGIIQFGRGPEGVPFEFYYSATIQALVTQGKAKMLARPNITTVQGREALINIGGEVPVPT 301 Query: 298 VS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 S ++T T+ T G++L TP + GRI + TEVS P+ V ++ R Sbjct: 302 QSVTNNTTTTTYTYRQAGIILRCTPRIHEDGRITATVHTEVSSPLY-VEDIKAYRFQNRS 360 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ADTTV L G T+V+ GL+ D + IP L +PILG+ FR+ R +R E+EI I T Sbjct: 361 ADTTVSLRDGETMVIGGLIGSDESRTLSKIPFLGDLPILGSFFRSVRQSRSESEIMIFLT 420 Query: 416 PFLV 419 ++ Sbjct: 421 AHVI 424 >gi|107021570|ref|YP_619897.1| Type II secretion system gspD [Burkholderia cenocepacia AU 1054] gi|116688086|ref|YP_833709.1| general secretion pathway protein D [Burkholderia cenocepacia HI2424] gi|105891759|gb|ABF74924.1| Type II secretion system gspD [Burkholderia cenocepacia AU 1054] gi|116646175|gb|ABK06816.1| general secretion pathway protein D [Burkholderia cenocepacia HI2424] Length = 774 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 71/342 (20%), Positives = 123/342 (35%), Gaps = 50/342 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G +A + + + + Y N + V++ L+ A QV ++ I E+ Sbjct: 366 SGDDNQPGGMIQADSATNSLIITASDPVYRN--LRSVIDQLD-ARRAQVYIEALIVELNS 422 Query: 208 DILKQIGFQHSITGSS--SGPSKSFAADFGGKFVSE------------------GGDFSV 247 + +G Q + G + + G ++ ++ Sbjct: 423 NTSGNLGIQWQVASGQFLGGTNLNPTGGLGNSIINLTTGGTAATAGLAANLANLNQGLNI 482 Query: 248 KGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + F +L + L+ P L + + A G T S S Sbjct: 483 GWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLT 542 Query: 305 TSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRK 355 + T D G+ LH P + G + L++ TE S V G NA P++ R Sbjct: 543 SGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVAGTTNAQTGPTFTKRS 602 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +T+ +G IVL GL++D+ Q +PLL IP +G LFR+ R +T + + Sbjct: 603 IQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSETKQRAKTNLMVFLR 662 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 P ++ S A+A NR + I G A Sbjct: 663 PVII---------------SDRSTAQAVTANRYDYIQGVTGA 689 >gi|56461126|ref|YP_156407.1| Type II secretory pathway, component PulD [Idiomarina loihiensis L2TR] gi|56180136|gb|AAV82858.1| Type II secretory pathway, component PulD [Idiomarina loihiensis L2TR] Length = 708 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 66/302 (21%), Positives = 123/302 (40%), Gaps = 49/302 (16%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAAD 233 +S +KV+ L+I QV ++ I E+ G Q + ++G + Sbjct: 339 ASLEKVIRDLDIR-RAQVQVEAIIVEIMEGDNVDFGVQWISEDGGMVQYNNGNQVPIGSL 397 Query: 234 FGGKF------------VSEGGD----------------FSVKGVLDRF-------SFET 258 G + +++GG ++ G ++ + Sbjct: 398 AAGAYQAREREGTTTTRITDGGVEVTTTEPDEPGDVSLLANLLGSVNGMMFGTIQNDWAA 457 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYG 313 V+ A+ + T LA P++ + + ASF G + + S++ +V + G Sbjct: 458 VVQAVTQDTRSNILATPSIVTVDNEEASFLVGQEVPTISGSTTGDNNDNPFQTVDRTEIG 517 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L TP + + + I+ EVS + R+ TTV G TIVL GL Sbjct: 518 IKLKVTPQINEGDAVQMTIEQEVSSLSGATAVDVI--INKRELKTTVMADDGETIVLGGL 575 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDD 432 + +D+Q+ +PLL IPILG LF ++ ++++ + + P +V+ MR+LS Sbjct: 576 IDEDVQESVSKVPLLGDIPILGKLFSSTSTSKQKRNLMVFIRPTIVRDGNRMRELSSAKY 635 Query: 433 HY 434 +Y Sbjct: 636 NY 637 >gi|171318827|ref|ZP_02907964.1| general secretion pathway protein D [Burkholderia ambifaria MEX-5] gi|171095968|gb|EDT40901.1| general secretion pathway protein D [Burkholderia ambifaria MEX-5] Length = 775 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 72/348 (20%), Positives = 119/348 (34%), Gaps = 56/348 (16%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G +A + + + + Y N + V++ L+ A QV ++ I E+ Sbjct: 360 SGDDNQPGGMIQADSATNSLIITASDPVYRN--LRSVIDQLD-ARRAQVYIEALIVELNS 416 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFG----------------------GKFVSEGGDF 245 +G Q + + G G S G Sbjct: 417 TTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSIINLTAGGVANAAGGITGGGLASNLGSL 476 Query: 246 S-------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 S + + +L + L+ P L + + A G T Sbjct: 477 SQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATG 536 Query: 299 SSSTGATSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMP 349 S S + T D G+ LH P + G + L++ TE S V G NA P Sbjct: 537 SYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTNAQTGP 596 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R +T+ +G IVL GL++D+ Q +PLL IP +G LFR+ R++T Sbjct: 597 TFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRQKTN 656 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 + + P ++ S A+ NR + I G A Sbjct: 657 LMVFLRPVII---------------SDRSTAQEVTANRYDYIQGVTGA 689 >gi|307247187|ref|ZP_07529238.1| hypothetical protein appser2_1870 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249414|ref|ZP_07531405.1| hypothetical protein appser4_2250 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251732|ref|ZP_07533636.1| hypothetical protein appser6_2530 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253966|ref|ZP_07535818.1| hypothetical protein appser9_2240 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256227|ref|ZP_07538014.1| hypothetical protein appser10_2320 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262791|ref|ZP_07544418.1| hypothetical protein appser13_2170 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306856325|gb|EFM88477.1| hypothetical protein appser2_1870 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858556|gb|EFM90621.1| hypothetical protein appser4_2250 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860818|gb|EFM92827.1| hypothetical protein appser6_2530 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863170|gb|EFM95112.1| hypothetical protein appser9_2240 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865408|gb|EFM97304.1| hypothetical protein appser10_2320 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871936|gb|EFN03653.1| hypothetical protein appser13_2170 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 429 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 14/251 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFV 239 +++ L+ E Q+ ++ I + + L+++G + I ++G + S A+ Sbjct: 163 QLIRNLDKPTE-QIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGSLEANGLPNTN 221 Query: 240 SEGGDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 +F V ++ + L ALE+ + +A P L + + AS G Sbjct: 222 RLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQG 281 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMP 349 + Y + ++ + + L TP + + +I L + + P G + Sbjct: 282 TEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPNSTGSTLQGLV 341 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF +S + E Sbjct: 342 TIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFSHSSDKISKRE 401 Query: 410 IFIAATPFLVK 420 + I TP++VK Sbjct: 402 LVIFVTPYIVK 412 >gi|304412646|ref|ZP_07394250.1| general secretion pathway protein D [Shewanella baltica OS183] gi|307307256|ref|ZP_07586993.1| general secretion pathway protein D [Shewanella baltica BA175] gi|304348990|gb|EFM13404.1| general secretion pathway protein D [Shewanella baltica OS183] gi|306910311|gb|EFN40743.1| general secretion pathway protein D [Shewanella baltica BA175] Length = 704 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 111/282 (39%), Gaps = 45/282 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + G + G Sbjct: 337 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWASKGGLGTQFNNLGPTIGEIGAGV 395 Query: 236 -------GKFVSEGGDF------------------------SVKGVLDRFSFETVLHALE 264 G V G + + + F ++ A+ Sbjct: 396 WAAQPIEGDLVCSGTNLDNCKRNPDKQGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVS 455 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFT 319 T LA P++T + Q ASF G + T S+++ + +V + GV L Sbjct: 456 SDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERKEVGVKLKVV 515 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + L I+ EVS + N G S+ R+ TTV SG +VL GL+ +++Q Sbjct: 516 PQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEVQ 573 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +P L IPI+G LF++S + + + I P +++ Sbjct: 574 ESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKPTIIRD 615 >gi|83749448|ref|ZP_00946440.1| General secretion pathway protein D [Ralstonia solanacearum UW551] gi|207738427|ref|YP_002256820.1| gspd-related protein [Ralstonia solanacearum IPO1609] gi|83723885|gb|EAP71071.1| General secretion pathway protein D [Ralstonia solanacearum UW551] gi|206591793|emb|CAQ58699.1| gspd-related protein [Ralstonia solanacearum IPO1609] Length = 657 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 85/410 (20%), Positives = 149/410 (36%), Gaps = 55/410 (13%) Query: 53 GLNKVIILQVPVDVQ-DVLVSDPTKADVV------------VHSPRTMYLFGKNVGQANV 99 GLN V V D + V + + T A VV V + ++ Sbjct: 206 GLNFVFDKDVRTDQKVTVFLRNSTVASVVNTVLLTNQLEQRVLDGNAILIYPNTP----- 260 Query: 100 ILIGHDGKQMLNLD-ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 D + + +L D + TL+ + +I V+ + +V+ IQ ++ Sbjct: 261 -AKQRDYQPLTVRTFVLSNSDAKDVANTLKTILKTRDIVVDEKRNMIVMRDTPDAIQAAE 319 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + V + E E +V L+V I EV+R L+ +G Q Sbjct: 320 KLVAVHEM-------------------------PEPEVMLEVEILEVKRSRLQDLGIQLP 354 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S + + S + + + + ++ T LA P + Sbjct: 355 SQLSLTPLASSSGGTLTLDDLRHLNPTRIGATVSPLN----VNVNAAVTDTNVLANPRVR 410 Query: 279 AISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + + A G + T +S+ A +V D G+ L PTV + +RI E Sbjct: 411 TRNKEKARIQVGQRVPNVTTTSTATGFVAENVQYVDVGLKLEVEPTVTPDNEVTIRINLE 470 Query: 336 VSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 VS+ + V R A T + L G +LAGL++D+ + +P L IP Sbjct: 471 VSDIISQVQTKSGSIAYEIGTRNATTLLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIP 530 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 LG LF N+ ++EI ++ TP +++P +L + E + Sbjct: 531 ALGRLFGAQSDNKLKSEIVLSITPRVIRPAQRPNLGSAEFDSGTESSLRL 580 >gi|330940238|gb|EGH43375.1| general secretion pathway protein D [Pseudomonas syringae pv. pisi str. 1704B] Length = 295 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 102/262 (38%), Gaps = 19/262 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ I EV+ +G Q + +SG + + G + G ++ Sbjct: 21 PLQVQIETRILEVQLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 80 Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + + L ALE + L+ P+L ++ Q A G S +T Sbjct: 81 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 140 Query: 305 T------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRK 355 SV GV+L P + G + + IQ +VS G A P R Sbjct: 141 NAGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTDTTGNGANGNPRISTRS 200 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V SG T++L GL+K D + +P L +IP L LF N+ ++ TE+ + T Sbjct: 201 VATQVAAQSGQTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLIT 260 Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437 P + + + D Y + Sbjct: 261 PRGI--TSSSQARQVTDDYRQQ 280 >gi|307545809|ref|YP_003898288.1| general secretion pathway protein D [Halomonas elongata DSM 2581] gi|307217833|emb|CBV43103.1| general secretion pathway protein D [Halomonas elongata DSM 2581] Length = 700 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 119/281 (42%), Gaps = 34/281 (12%) Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 A +++++ L++ QV ++ IAE+ K++G Q + G SG A Sbjct: 353 ALEGYRELVSRLDMR-RAQVAVEAIIAEITESRAKELGVQW-LFGDISGEGTVPAGGVNF 410 Query: 237 KFVSEGGD-------------------FSVKGVL--------DRFSFETVLHALERATAI 269 S G ++ GV SF +L+AL T Sbjct: 411 PSASTPGINQIAAAAASQDASALGSLLGNLNGVTAGVGRLSSGGVSFAMLLNALRSDTQT 470 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSP 325 L+ P+LT + AS G + + T S++ T ++ D GV L+ PT+ + Sbjct: 471 NLLSTPSLTTLDNAEASILVGQEVPFVTGSTTVDNTNPFQTIQREDVGVKLNIRPTIGAD 530 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L I EVS GV A D+ + R+ +TTV GG IVL GL+ D+ ++ + Sbjct: 531 NSIRLEIVQEVSSIDEGVKASDVVT-NKREIETTVLTQDGGIIVLGGLISDENANAEQKV 589 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 PLL IP +G LFR R +++ + + +++ Sbjct: 590 PLLGDIPGVGRLFRYDRDTQDKRNLMVFIRARVLRDAPQTQ 630 >gi|217969269|ref|YP_002354503.1| type IV pilus secretin PilQ [Thauera sp. MZ1T] gi|217506596|gb|ACK53607.1| type IV pilus secretin PilQ [Thauera sp. MZ1T] Length = 711 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 103/268 (38%), Gaps = 28/268 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------SSGPSKSF-- 230 S + +++ +++A QV ++ I E + + +G + + S G F Sbjct: 438 QSVRNLISDVDVA-PRQVLIEARIVEANKTFSRDLGVRLGLGKSKPWKINDGGAQIGFGS 496 Query: 231 ----------------AADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTL 272 A G + G F++ + L ALE R + Sbjct: 497 STLGGSAGSSGSFRPETATSGADIQNPYGSFALSIFNSSVTRFLNLELQALESDGRGRVV 556 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + P + + A G Q S+ G +V D + L P++ GRI L Sbjct: 557 SSPRVLTANQVEALIKQGTQIPIPIPSTQVGGEPTVEYKDAVLSLKVRPSITPDGRIQLS 616 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + P PS + T V + +GGT+V+ G+ ++ ++ +P+L ++ Sbjct: 617 VLVNKDRPDFTNVVLGRPSIDTKSVQTEVTVENGGTLVIGGVYEEQELNGEDRVPVLGEL 676 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P+LG LFR E+ E+ + TP LV Sbjct: 677 PVLGGLFRTRSTIAEKKELLVFITPRLV 704 >gi|117625269|ref|YP_854407.1| putative type II secretion protein GspD [Escherichia coli APEC O1] gi|115514393|gb|ABJ02468.1| putative type II secretion protein GspD [Escherichia coli APEC O1] Length = 686 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|319761508|ref|YP_004125445.1| general secretion pathway protein d [Alicycliphilus denitrificans BC] gi|330823377|ref|YP_004386680.1| general secretion pathway protein D [Alicycliphilus denitrificans K601] gi|317116069|gb|ADU98557.1| general secretion pathway protein D [Alicycliphilus denitrificans BC] gi|329308749|gb|AEB83164.1| general secretion pathway protein D [Alicycliphilus denitrificans K601] Length = 777 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 61/280 (21%), Positives = 111/280 (39%), Gaps = 36/280 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228 + V++ L+ QV ++ I EV + + + G Q + G Sbjct: 422 RAVIDKLD-GKRAQVLIESLIVEVSANKVAEFGIQWQTAFGNYGNGAVGVIGTNSGVAGG 480 Query: 229 --------SFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276 + ++ S G+ + R + + + LE L+ P Sbjct: 481 NIIDLAVAAATGNYASLTSSAIGNGMNVAIAPRINGKYYLGALANFLENTGDANVLSTPN 540 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGR 327 L + + A G + T S + T+V D G++L PT+ G Sbjct: 541 LLTLDNEEAQIIIGNNVPFPTGSYANTGGNGGAVNPFTTVERKDVGLMLRVRPTINENGT 600 Query: 328 IGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + L + EVS+ + PS R ++TV + G IVL GLL+D ++ +P Sbjct: 601 VKLTLYQEVSKVNESTLTNVNGPSTSKRSIESTVLVDDGSVIVLGGLLEDSYSLNQDKVP 660 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++ +P+LGALFRN +R++T + + P +++ A D Sbjct: 661 VMGDLPVLGALFRNENRSRKKTNLMVFLRPMVIRDNATSD 700 >gi|297537923|ref|YP_003673692.1| type II and III secretion system protein [Methylotenera sp. 301] gi|297257270|gb|ADI29115.1| type II and III secretion system protein [Methylotenera sp. 301] Length = 675 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 17/247 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFG---GKFVSEGGDFSVK 248 +V L++ + EV R L+++G ++ I +S P + + G V+ +++ Sbjct: 336 PEVMLEIEVLEVSRSRLQELGVEYPNRIGVNSLIPITTVTSATGVVASSTVNTPTQLTLE 395 Query: 249 GVLD------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G+L+ S ++ + + L+ P + + + A G + T +S+ Sbjct: 396 GLLNLSKGRFDVSPNPAVNFRKTTGDVNLLSNPRIRVRNNEKAKILVGDKVPVITTTSTA 455 Query: 303 G---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKA 356 + SV D G+ L P + + + ++I EVS I N + + R A Sbjct: 456 NVGISESVQYVDVGLKLDVEPRITADNYVNIKIALEVSSLGERTITRNGATVYTIGTRDA 515 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T + L G T VLAGL+ DD ++ +P L IP++G LF N + + +TEI +A TP Sbjct: 516 NTILRLKDGETQVLAGLISDDERKNASKLPGLGDIPLIGRLFSNQQDQKNKTEIVLAITP 575 Query: 417 FLVKPVA 423 ++ +A Sbjct: 576 RIISNIA 582 >gi|91785777|ref|YP_560983.1| putative general secretory pathway protein D [Burkholderia xenovorans LB400] gi|91689731|gb|ABE32931.1| Putative general secretory pathway protein D [Burkholderia xenovorans LB400] Length = 814 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 113/317 (35%), Gaps = 57/317 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ A QV L+ I E+ + +G Q + +S + V+ Sbjct: 419 RAVIDQLD-ARRAQVYLEALIVELNSNTSGNLGIQWQVANNSIFAGTNLQTGSSNSIVNL 477 Query: 242 GGDFS-----------------------------VKGVLDRFSFETVLHALERATAIRTL 272 + + +L AL + L Sbjct: 478 TAGAIAAGAAGAATGGLASAIGTQGLQQGLNIGWIHNIFGVQGLGALLQALSQTADANVL 537 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLS 324 + P L + + A G +T S S +S T D G+ LH P + Sbjct: 538 STPNLITLDNEEAKIVVGTNVPIQTGSYSNLTSSTATSAFNTYDRVDVGLTLHVKPQITD 597 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 G + L++ TE S V G P + R +TV +G IVL GL++D+ Q Sbjct: 598 GGILKLQLYTEDSAIVTGTTNATTNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQV 657 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 +PLL IP +G LFR+ + R +T + + P ++ S A Sbjct: 658 SNSKVPLLGDIPWIGQLFRSEQKTRNKTNLMVFLRPVII---------------SDRGTA 702 Query: 441 KAFFFNRVNKIYGPKEA 457 +A NR + I G + A Sbjct: 703 QAVTSNRYDYIQGVQGA 719 >gi|27364325|ref|NP_759853.1| general secretion pathway protein D [Vibrio vulnificus CMCP6] gi|320157717|ref|YP_004190096.1| general secretion pathway protein D [Vibrio vulnificus MO6-24/O] gi|27360443|gb|AAO09380.1| general secretion pathway protein D [Vibrio vulnificus CMCP6] gi|319933029|gb|ADV87893.1| general secretion pathway protein D [Vibrio vulnificus MO6-24/O] Length = 673 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 109/291 (37%), Gaps = 46/291 (15%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA- 231 + + V+ L+I QV ++ I E+ +G Q I S++G S Sbjct: 329 ALQDVITQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAMIQYSNTGASIGQVM 387 Query: 232 -------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 D+ + + + ++ Sbjct: 388 IGLEEAKDTTKTESRWDPDKNQWVDRQYTEKGDYSTLASALSKVNGAALSVVMGDWTALI 447 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVV 315 A+ + L+ P++T + ASF G + T S++ +V + G+ Sbjct: 448 SAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIK 507 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L P + + L I+ EVS V+G N + R+ +T+V + G +VL GL+ Sbjct: 508 LKVVPQINEGDSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLID 566 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + + +PLL IP+LG LF+++ E+ + + P +++ D Sbjct: 567 ERALESESKVPLLGDIPVLGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTAD 617 >gi|116053188|ref|YP_793509.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa UCBPP-PA14] gi|115588409|gb|ABJ14424.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa UCBPP-PA14] Length = 710 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 104/285 (36%), Gaps = 37/285 (12%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------- 225 + Q +++++ L+I QV ++ I E K +G + + Sbjct: 426 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHNGNWNSYGKN 484 Query: 226 --------------------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 S + D G K S G + + D + Sbjct: 485 GNMGIKDKEGYNCGPFQGQCTFPTRDNSPTPFVDMGAKDASSG--IGIGFITDNIILDLQ 542 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E+ +++P + ++A G + Y+ SSS ++ + + + L T Sbjct: 543 LSAMEKTGNGEVVSQPKVVTSDKETAKILKGSEIPYQEASSSGATST-SFKEAALSLEVT 601 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + RI + ++ P +P + + + + G TIV+ G+ + Sbjct: 602 PQITPDNRIIVEVKVTKDAPDFQNALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQT 661 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + + +P L +P LG LFR + + E+ + TP ++ A+ Sbjct: 662 KAVDKVPFLGDLPYLGRLFRRDTVSDTKNELLVFLTPRIMNNQAI 706 >gi|254787478|ref|YP_003074907.1| fimbrial assembly protein PilQ [Teredinibacter turnerae T7901] gi|237686656|gb|ACR13920.1| fimbrial assembly protein PilQ [Teredinibacter turnerae T7901] Length = 727 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 110/277 (39%), Gaps = 43/277 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 K++++ ++I QV ++ I D K++GF+ + S S S +F G S Sbjct: 449 KQLIDRIDIP-VRQVMIEARIVVANSDFRKELGFRIAGDAVESSKSGSHIHEFTGSLDSV 507 Query: 241 --------------------------------------EGGDFSVKGVLDRFSFETVLHA 262 G + + + F L A Sbjct: 508 YADETSITGAFVDSDGDGTADRAHTFPQNSFVDLGVFNPTGSLAWNVISNNFMIGMELSA 567 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 L+ + +++P + Q AS SG ++ S+S G T+++ D + L TP + Sbjct: 568 LQDSGFAEIVSQPKVITGDKQQASIQSGTSVPFQEESAS-GGTTISFKDVVLRLDVTPQI 626 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 RI + ++ + +P + DT+V + G T+VL G+ + ++ + Sbjct: 627 TPDNRIIMDLEILQDSVTGYESG--VPIIDITHLDTSVLVADGDTVVLGGIYATEQRKGQ 684 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP+LG LFR ++ E+ I TP ++ Sbjct: 685 SKVPLLGDIPLLGRLFRYDISQEDKRELLIFITPRIM 721 >gi|75994479|ref|YP_325593.1| type II secretion protein [Escherichia coli O157:H7 EDL933] gi|3822147|gb|AAC70101.1| type II secretion protein [Escherichia coli O157:H7] Length = 642 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 107/297 (36%), Gaps = 30/297 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+I QV ++ IAE++ +G Q + S + Sbjct: 321 ENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTGLPITTMVQTR 379 Query: 242 GGDF-------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + + + ++ +L AL ++ LA P++ + A+F Sbjct: 380 QNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFN 439 Query: 289 SGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---I 341 G + +T S +V G+ L P + + L I+ EVS + Sbjct: 440 VGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAV 499 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 ++ R + + +G T+V+ GLL I+ + +PLL IP+LG LFR Sbjct: 500 ATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAK 559 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 + + + P +++ D + K FN+ KE + Sbjct: 560 SEQTAKRNLMLFIRPTIIR---------ERDGFRHASAEKYQSFNQEQVQSRGKETT 607 >gi|332531032|ref|ZP_08406951.1| type II and III secretion system protein [Hylemonella gracilis ATCC 19624] gi|332039513|gb|EGI75920.1| type II and III secretion system protein [Hylemonella gracilis ATCC 19624] Length = 740 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 63/313 (20%), Positives = 112/313 (35%), Gaps = 48/313 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------------GSSS 224 + V++ L++ QV ++ IAEV D+ G Q GS + Sbjct: 395 RAVIDQLDMR-RAQVFVESLIAEVNADVANDFGIQWQGGIPSGSSSSVVGLMGTNFGSGA 453 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTA 279 G + A+ + G GV + + + LE L+ P L Sbjct: 454 GNIFNLASGISSGQPAAPGAGFTAGVGVQRGNNGVALGVLARFLETNRMGNVLSTPNLMT 513 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGL 330 + + A G + T + + ++ D G+ L P + G + + Sbjct: 514 LDNEEAKIVIGQNVPFVTGQYTANNSSSGAVNPFQTIERRDVGLTLAVRPQISENGTVKM 573 Query: 331 RIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 I EVS + + R DT+V + G IVL GLL+D+ +E +P L Sbjct: 574 VISQEVSSVDPTSLTSAAGLRTSKRSIDTSVLVDDGAIIVLGGLLQDESSVSEEKVPGLG 633 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 IP LG LFR+ +R++T + + P +V+ D+ +R + Sbjct: 634 SIPGLGWLFRSESGSRKKTNLMVFLRPVIVRNT---------------QDSNRVSLDRYD 678 Query: 450 KIYGPKEASEVEG 462 + + + Sbjct: 679 LMRAVQSQQQPAR 691 >gi|90022332|ref|YP_528159.1| peptidase M41, FtsH [Saccharophagus degradans 2-40] gi|89951932|gb|ABD81947.1| type II and III secretion system protein [Saccharophagus degradans 2-40] Length = 727 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 58/278 (20%), Positives = 110/278 (39%), Gaps = 42/278 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------------ITGSSSGP 226 +++++ ++I QV ++ I D K++G + + +TG +G Sbjct: 446 RRLVDRIDIP-VRQVMIEARIVIANSDFRKELGVRMAGDAVETSVSGDTKFEMTGRLTGL 504 Query: 227 SKSFAADFGGKFV-------------------------SEGGDFSVKGVLDRFSFETVLH 261 + + + FV + G F+ + F L Sbjct: 505 TAADGSGPEALFVDTDGDGVTDDERSLLDSSLVDLGVFNPAGAFTWNVISSNFLLGMELS 564 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 ALE + +++P + Q AS SG + Y+ S+S G T+ + + + L TP Sbjct: 565 ALENSGYAEIVSQPKVITGDKQKASIESGTEIPYQEESAS-GGTTTSFKEAVLKLEVTPQ 623 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + R+ + + +P + + +T V + G TIVL G+ + Sbjct: 624 ITPDNRVIMDLVINQDSISSIDANSGIPVIDITQLETQVLVADGETIVLGGIYTTNTFTG 683 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +PLL IP +G LFRN + ++ EI I TP ++ Sbjct: 684 ETKVPLLGDIPFVGKLFRNDFKSEDKREILIFITPRIM 721 >gi|238751132|ref|ZP_04612627.1| Protein transporter HofQ [Yersinia rohdei ATCC 43380] gi|238710610|gb|EEQ02833.1| Protein transporter HofQ [Yersinia rohdei ATCC 43380] Length = 376 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 6/231 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L+++G + + + S F + F+V + Sbjct: 145 QQVQLAAHIVTISRENLQELGVRWGMGEAKQNSSLRMNDFNVNLPLPNRVISAGFNVARI 204 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + LE+ I +A P L A Q+AS G Y G ++V Sbjct: 205 GGRLLELELSA-LEQENQIDIIASPHLVASHQQTASIKQGSDIPYTVSKGKKGISTVEFK 263 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + GD + ++ T + + G TI Sbjct: 264 EAVLGMEVTPKILRNGKITLDLKISQNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETI 323 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VL G+ + Q +P+L+ IP LG LF+ + E+ I TP L+ Sbjct: 324 VLGGIFQQKSTQGVHKVPVLADIPWLGVLFKQDAQQQSRRELVIFITPKLI 374 >gi|53804514|ref|YP_113593.1| general secretion pathway protein D [Methylococcus capsulatus str. Bath] gi|53758275|gb|AAU92566.1| general secretion pathway protein D [Methylococcus capsulatus str. Bath] Length = 751 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 14/252 (5%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----GPSKSFAADFGG 236 + V+ L++ QV + TI E+ Q G + I+ SS P + DF Sbjct: 465 EAVIKALDVL-PLQVLIDATIVEISLKNDLQYGLKWLISSGSSTEALGSPLAALVKDFIN 523 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 S G FS + + + + +L+ L + + ++ P+L ++ Q A G Q Sbjct: 524 GAASASGGFSYALIANGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVL 583 Query: 297 TVSSSTGATSVTTHDY------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 T ++++ T + GV L P V S G + L I +S P + Sbjct: 584 TGTTASATIGTTQFNQFQQQQSGVTLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKT 643 Query: 351 YR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ R+ + V +P+G T+ L GL+ D + + G+P L++IP++G +F ++ E T Sbjct: 644 FQFANREIQSVVAVPNGQTLALGGLISDKRSETQTGLPYLNQIPMIGWMFGSTEIKPERT 703 Query: 409 EIFIAATPFLVK 420 E+ + TP +V+ Sbjct: 704 ELVVLITPRVVE 715 >gi|91212377|ref|YP_542363.1| type II secretion protein GspD [Escherichia coli UTI89] gi|218560038|ref|YP_002392951.1| general secretion pathway protein D precursor [Escherichia coli S88] gi|237706291|ref|ZP_04536772.1| type II secretion protein GspD [Escherichia sp. 3_2_53FAA] gi|91073951|gb|ABE08832.1| hypothetical type II secretion protein GspD [Escherichia coli UTI89] gi|218366807|emb|CAR04576.1| general secretion pathway protein D precursor [Escherichia coli S88] gi|226899331|gb|EEH85590.1| type II secretion protein GspD [Escherichia sp. 3_2_53FAA] gi|294493975|gb|ADE92731.1| general secretion pathway protein D [Escherichia coli IHE3034] gi|307625435|gb|ADN69739.1| general secretion pathway protein D precursor [Escherichia coli UM146] gi|323951515|gb|EGB47390.1| general secretion pathway protein D [Escherichia coli H252] Length = 686 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|10955268|ref|NP_052609.1| EtpD [Escherichia coli O157:H7 str. Sakai] gi|149930769|ref|YP_001294686.1| w0022 [Escherichia coli] gi|37695757|gb|AAR00419.1|AF401292_20 w0022 [Escherichia coli] gi|2598401|emb|CAA70955.1| etpD [Escherichia coli] gi|3337000|dbj|BAA31759.1| Type II secretion pathway related protein [Escherichia coli O157:H7 str. Sakai] Length = 585 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 107/297 (36%), Gaps = 30/297 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+I QV ++ IAE++ +G Q + S + Sbjct: 264 ENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTGLPITTMVQTR 322 Query: 242 GGDF-------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + + + ++ +L AL ++ LA P++ + A+F Sbjct: 323 QNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFN 382 Query: 289 SGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---I 341 G + +T S +V G+ L P + + L I+ EVS + Sbjct: 383 VGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAV 442 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 ++ R + + +G T+V+ GLL I+ + +PLL IP+LG LFR Sbjct: 443 ATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAK 502 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 + + + P +++ D + K FN+ KE + Sbjct: 503 SEQTAKRNLMLFIRPTIIR---------ERDGFRHASAEKYQSFNQEQVQSRGKETT 550 >gi|192359937|ref|YP_001980940.1| fimbrial assembly protein PilQ [Cellvibrio japonicus Ueda107] gi|190686102|gb|ACE83780.1| fimbrial assembly protein PilQ [Cellvibrio japonicus Ueda107] Length = 714 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 62/303 (20%), Positives = 118/303 (38%), Gaps = 36/303 (11%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + + E + + + ++ + ++++ ++I QV ++ I Sbjct: 411 TGSVLSERGQGIVDERTNSIIITDTADRI--EAFRRLVEQIDIPI-RQVMIESRIVIANT 467 Query: 208 DILKQIGFQHSITGSS-------------------SGPSKSFAADFGGKFV--------- 239 D +Q+G + G G S + GG Sbjct: 468 DFERQLGIRWGGAGYHLNNSRLINVAGSQSGLDDEDGTSPANWFTNGGTLNLTENNMVNL 527 Query: 240 ---SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G +V + D + L ALE + +++P + Q A SG + Y+ Sbjct: 528 PVNNPAGSIAVGVLTDSVFLDMELSALETSGYAEIVSQPKVITSDKQKAVIKSGKEIAYQ 587 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 S S G T+ + ++L P + RI + + V + +PS V + Sbjct: 588 ETSPS-GGTTTGFKEAVLMLEVVPQITPDNRIIMDLFVTKDS-VGEITQQGVPSLDVTRL 645 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V + +G T+VL G+ + + + +P+L IP LG LF+ + N+ +TE+ I TP Sbjct: 646 QTKVLVNNGQTVVLGGVFSLESTKGESKVPVLGDIPYLGRLFKRTVDNQFKTELLIFVTP 705 Query: 417 FLV 419 L+ Sbjct: 706 KLI 708 >gi|53728904|ref|ZP_00134621.2| COG4796: Type II secretory pathway, component HofQ [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|303250734|ref|ZP_07336930.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252023|ref|ZP_07338194.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649453|gb|EFL79638.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650404|gb|EFL80564.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 417 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 14/251 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFV 239 +++ L+ E Q+ ++ I + + L+++G + I ++G + S A+ Sbjct: 151 QLIRNLDKPTE-QIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGSLEANGLPNTN 209 Query: 240 SEGGDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 +F V ++ + L ALE+ + +A P L + + AS G Sbjct: 210 RLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQG 269 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMP 349 + Y + ++ + + L TP + + +I L + + P G + Sbjct: 270 TEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPNSTGSTLQGLV 329 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + ++ +T V G TIVL G+ + + ++ +P+L IP+L LF +S + E Sbjct: 330 TIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFSHSSDKISKRE 389 Query: 410 IFIAATPFLVK 420 + I TP++VK Sbjct: 390 LVIFVTPYIVK 400 >gi|238752500|ref|ZP_04613975.1| General secretion pathway protein D [Yersinia rohdei ATCC 43380] gi|238709263|gb|EEQ01506.1| General secretion pathway protein D [Yersinia rohdei ATCC 43380] Length = 625 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 101/253 (39%), Gaps = 12/253 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGK 237 +KV+ L++ QV ++ I E + +G Q + S + + Sbjct: 314 EKVIEKLDVR-RAQVLVEAIIVETQNGEGLNLGIQWANKFYGGVNFLPKPDSIKDNKSSE 372 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + +++ + AL + LA P++ + A F G + T Sbjct: 373 NPVPMLITGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 432 Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPS 350 + +T S++ GV+L P + + L I+ EVS + Sbjct: 433 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSIADNSDINTHNLGSV 492 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+V+ GLL I + +P L IP++GALFR S+ E++ + Sbjct: 493 FNKRVVNNAVLVKSGETVVVGGLLDKKINKTINKVPFLGDIPLIGALFRQSKERMEKSNL 552 Query: 411 FIAATPFLVKPVA 423 + P +++ + Sbjct: 553 ILFIKPTILRETS 565 >gi|157377488|ref|YP_001476088.1| general secretion pathway protein D [Shewanella sediminis HAW-EB3] gi|157319862|gb|ABV38960.1| general secretion pathway protein D [Shewanella sediminis HAW-EB3] Length = 724 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 63/283 (22%), Positives = 111/283 (39%), Gaps = 46/283 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 337 ESVINQLDIR-RAQVLVEAIIVEVGEGDDVGFGVQWATAAGGGTQFNNLGPTIGEIGAGV 395 Query: 236 ----------------------GKFVSEGGDFSVKGVLDRFS----------FETVLHAL 263 ++G + L + + F ++ A+ Sbjct: 396 WQAQEKEASQTCTGSGDNKTCTDNPATQGDITLLAQALGKVNGMAWGVAMGDFGALIQAV 455 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHF 318 T LA P++T + Q ASF G + T S+S+ + +V + GV L Sbjct: 456 SSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSTSSSSNTNPFQTVERKEVGVKLKV 515 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + + L I+ EVS I G ++ R+ TTV SG +VL GL+K+++ Sbjct: 516 VPQINEGTSVKLTIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLIKEEV 573 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 Q+ + +P L +PI+G LF++S +T + + P +++ Sbjct: 574 QESVQKVPFLGDLPIIGHLFKSSSSGTRKTNLMVFIKPTIIRD 616 >gi|167571805|ref|ZP_02364679.1| general secretion pathway protein D [Burkholderia oklahomensis C6786] Length = 743 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 115/305 (37%), Gaps = 45/305 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFV 239 + V++ L+ A QV ++ + E+ +G Q + ++ +G + + GG + Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLTTGGVGGGNSI 445 Query: 240 SE-----GGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTLTAIS 281 + +V G L +L + L+ P L + Sbjct: 446 TNLTAGATNPLNVVGALTPGLNIGWLRNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTLD 505 Query: 282 GQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + A G T S ++ + D G+ LH P + G + L++ Sbjct: 506 NEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITDGGILKLQLY 565 Query: 334 TEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 TE S V G + P++ R +TV +G IVL GL++D+ Q +PLL IP Sbjct: 566 TEDSSVVNGTLTSQTGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVANNKVPLLGDIP 625 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +G LFR+ R +T + + P ++ + A+A NR + I Sbjct: 626 WIGQLFRSEGKTRTKTNLMVFLRPVII---------------GDRETAQAVTSNRYDYIQ 670 Query: 453 GPKEA 457 G A Sbjct: 671 GVTGA 675 >gi|325294579|ref|YP_004281093.1| type II and III secretion system protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065027|gb|ADY73034.1| type II and III secretion system protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 642 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 126/332 (37%), Gaps = 34/332 (10%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 ++ L+ + + + + + ++ + ++ + S + Sbjct: 311 IKQELQEPTKTYIVNLNYANAEEIEKEIKELVKKLDKRERITVNKSTNSLLLTVTKKHYQ 370 Query: 183 KVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGK 237 ++MNLL + QV +K I ++ K GF I G + + PS +G Sbjct: 371 EIMNLLKKLDKPMKQVIVKAKIVQISTSAAKDFGFGWLIGGYNHMGTPPSSYITGSYGFG 430 Query: 238 FVSEGG-----------------------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274 S G + E L AL+ + ++ Sbjct: 431 LGSNTGVLPFINETSYSSLYNIPVGESTLALGILNKSQNLKVEIALKALQLDGNAKIVSS 490 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLR 331 P + ++ Q A+ G + Y+ + ++G + V+ ++L P + + I L Sbjct: 491 PEVLTLNNQEATIEQGIEIPYRESTVASGGATTYTVSFKRASLILKVKPHITNNNEIILD 550 Query: 332 IQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 ++ P + + + P+ R + +++ +G TIV+ G+ + + + K G+P++ Sbjct: 551 LEVRKDSPNYEHVALTGSNEPAIDTRNVKSRIKVANGNTIVIGGIYEKEKSKSKTGVPVI 610 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 S IP+LG LF+ E + I TP +V+ Sbjct: 611 SNIPLLGWLFKQESVKFTEKNLLIFITPKVVE 642 >gi|110833294|ref|YP_692153.1| general (type II) secretion pathway protein D [Alcanivorax borkumensis SK2] gi|110646405|emb|CAL15881.1| general (type II) secretion pathway protein D [Alcanivorax borkumensis SK2] Length = 710 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 69/329 (20%), Positives = 129/329 (39%), Gaps = 35/329 (10%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D + L+ F+ +++ D + + S +A E + ++ Sbjct: 293 DAKSMAELLKNFVDGASVN-RAGGDGKTTSVALNNNEVSIQADESLNALVVRAKPAMMKQ 351 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + V++ L++ Q+ ++ I E+ + K +GFQ+ + G A +FGG Sbjct: 352 --IQSVISKLDVR-RAQILIEAAIVEISGEQGKNLGFQYVGGSNEDGVG---AVNFGGNG 405 Query: 239 VSEG----------------GDFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTL 277 +S GD G+ + ++ AL ++ + L+ P++ Sbjct: 406 LSVNSVVQALASDDPSGLSLGDGITAGLGETDSDGDLKWGALIQALSTSSDVNLLSTPSI 465 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + AS G + T S+ T++ D G+ L TP V I L Sbjct: 466 LTLDNEEASIIVGENVPFVTGQSTNTGSGVSNPFTTIQREDVGLTLKVTPHVAGLSTIRL 525 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ E S RK +TV TI L GL+KDDI+ +P L Sbjct: 526 ELEQESSAVKDSAGDAVDIVTTTRKLQSTVLADDAETIALGGLIKDDIRVTVRKVPFLGD 585 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LG LFR++ +R ++ + + P ++ Sbjct: 586 IPVLGFLFRSTSKDRVKSNLMVFLKPTIL 614 >gi|296135153|ref|YP_003642395.1| type IV pilus secretin PilQ [Thiomonas intermedia K12] gi|295795275|gb|ADG30065.1| type IV pilus secretin PilQ [Thiomonas intermedia K12] Length = 752 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 68/357 (19%), Positives = 122/357 (34%), Gaps = 55/357 (15%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY--- 176 A + L + V+L G+ + + R + T L+ NQ Sbjct: 397 AATVVAMLTGAAGGAQSGTTATPSPVLLPGLSSSAAPTSRILSPRGTVLADPRTNQIFVT 456 Query: 177 -ANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHS--------------- 218 S ++V L+ + QV ++ I E + +G + Sbjct: 457 DIPSKLEEVAQLIAKIDKPVRQVMIEARIVEASDQFGRSLGVKLGFLDARGIQGGVPGTN 516 Query: 219 --------ITGSSSG-----------------------PSKSFAADFGGKFVSEGGDFSV 247 ++G G P+ A S+ Sbjct: 517 LVGGTYGTVSGDYLGVANQTNQPGSSAATLADSQFVNLPAFGLAGSLLAGAAPSSLGISL 576 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 L A+E + ++ P + A+ G + Y+ +SS GAT+V Sbjct: 577 FNAAANRFINLELSAMEADGKGKIISSPRVITADLSKATIEQGTEIPYQQATSS-GATAV 635 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 T + L TP + G + + ++ P G + +PS T V++ +GGT Sbjct: 636 TFKKAVLSLDVTPQITPDGNVIMNVEIHKDSP--GASTAGVPSINTNTVTTQVQVENGGT 693 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 +VL G+ Q + +PLL IP+LG LF+N+ + E+ + TP +V + Sbjct: 694 VVLGGIYTSQEQNQTDKVPLLGDIPVLGNLFKNNSKMYNKNELMVFLTPKIVTNADL 750 >gi|168750719|ref|ZP_02775741.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4113] gi|168757329|ref|ZP_02782336.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4401] gi|168763015|ref|ZP_02788022.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4501] gi|168769207|ref|ZP_02794214.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4486] gi|168769317|ref|ZP_02794324.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4486] gi|168776690|ref|ZP_02801697.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4196] gi|168783068|ref|ZP_02808075.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4076] gi|168789906|ref|ZP_02814913.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC869] gi|168802552|ref|ZP_02827559.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC508] gi|195940092|ref|ZP_03085474.1| EtpD [Escherichia coli O157:H7 str. EC4024] gi|254667451|ref|YP_003082137.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359] gi|261225635|ref|ZP_05939916.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK2000] gi|187767920|gb|EDU31764.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4196] gi|188015158|gb|EDU53280.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4113] gi|188999508|gb|EDU68494.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4076] gi|189355641|gb|EDU74060.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4401] gi|189361611|gb|EDU80030.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4486] gi|189361663|gb|EDU80082.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4486] gi|189366756|gb|EDU85172.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC4501] gi|189370555|gb|EDU88971.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC869] gi|189375476|gb|EDU93892.1| general secretion pathway protein D [Escherichia coli O157:H7 str. EC508] gi|254595803|gb|ACT75163.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359] gi|320187907|gb|EFW62576.1| General secretion pathway protein D [Escherichia coli O157:H7 str. EC1212] gi|326337158|gb|EGD60994.1| General secretion pathway protein D [Escherichia coli O157:H7 str. 1125] gi|326347656|gb|EGD71374.1| General secretion pathway protein D [Escherichia coli O157:H7 str. 1044] Length = 650 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 107/297 (36%), Gaps = 30/297 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+I QV ++ IAE++ +G Q + S + Sbjct: 329 ENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTGLPITTMVQTR 387 Query: 242 GGDF-------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + + + ++ +L AL ++ LA P++ + A+F Sbjct: 388 QNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFN 447 Query: 289 SGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---I 341 G + +T S +V G+ L P + + L I+ EVS + Sbjct: 448 VGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAV 507 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 ++ R + + +G T+V+ GLL I+ + +PLL IP+LG LFR Sbjct: 508 ATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAK 567 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 + + + P +++ D + K FN+ KE + Sbjct: 568 SEQTAKRNLMLFIRPTIIR---------ERDGFRHASAEKYQSFNQEQVQSRGKETT 615 >gi|324018098|gb|EGB87317.1| general secretion pathway protein D [Escherichia coli MS 117-3] Length = 686 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 64/320 (20%), Positives = 119/320 (37%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSV----- 247 G Q + + P + A G +SE G ++ Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 248 ----------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + + + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAGGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|332702049|ref|ZP_08422137.1| type II and III secretion system protein [Desulfovibrio africanus str. Walvis Bay] gi|332552198|gb|EGJ49242.1| type II and III secretion system protein [Desulfovibrio africanus str. Walvis Bay] Length = 524 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 62/279 (22%), Positives = 109/279 (39%), Gaps = 35/279 (12%) Query: 175 QYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 Q A S++++ L+ + Q+ LK I E +D + +G Q +SG + A Sbjct: 226 QAAPEESRRILRLVEQLDKPRAQILLKAHIVETTKDTARDLGVQWGGVYQTSGSGNNLFA 285 Query: 233 DFGGK------------------------FVSEGGDFSVKGV--------LDRFSFETVL 260 GG V+ D + G L E L Sbjct: 286 IPGGTNGRLEDNKWVYDSTLGTGIGGQGFGVNLPADLAAGGTQLGLMFGKLGGSILELQL 345 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 AL+ + L+ P+++ + Q A +G + Y + G +V D + L TP Sbjct: 346 SALQENGRVNILSSPSISTLDNQMAFTENGERVPY-VATDEEGDLNVKFEDAVLRLEITP 404 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 V+ ++ L+I E P ++ +T + + G T+V++GL +D Sbjct: 405 HVIDREQLKLKILVRKDEVDTSRTVQGNPFIIKKRTETVLVVDDGETVVISGLSRDFDSS 464 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P L IP+LG LF+ + E E+ I TP ++ Sbjct: 465 RDQKVPWLGDIPLLGRLFQRNVDKAEMEEVLIFITPHVL 503 >gi|254238253|ref|ZP_04931576.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa C3719] gi|126170184|gb|EAZ55695.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa C3719] Length = 710 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 104/285 (36%), Gaps = 37/285 (12%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------- 225 + Q +++++ L+I QV ++ I E K +G + + Sbjct: 426 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHNGNWNSYGKN 484 Query: 226 --------------------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 S + D G K + G + + D + Sbjct: 485 GNMGIKDKEGYNCGPFQGQCTFPTRDNSPTPFVDMGAKDATSG--IGIGFITDNIILDLQ 542 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E+ +++P + ++A G + Y+ SSS ++ + + + L T Sbjct: 543 LSAMEKTGNGEVVSQPKVVTSDKETAKILKGSEIPYQEASSSGATST-SFKEAALSLEVT 601 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + RI + ++ P +P + + + + G TIV+ G+ + Sbjct: 602 PQITPDNRIIVEVKVTKDAPDFQNALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQT 661 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + + +P L +P LG LFR + + E+ + TP ++ A+ Sbjct: 662 KAVDKVPFLGDLPYLGRLFRRDTVSDTKNELLVFLTPRIMNNQAI 706 >gi|221202224|ref|ZP_03575259.1| general secretion pathway protein D [Burkholderia multivorans CGD2M] gi|221208715|ref|ZP_03581714.1| general secretion pathway protein D [Burkholderia multivorans CGD2] gi|221214336|ref|ZP_03587308.1| general secretion pathway protein D [Burkholderia multivorans CGD1] gi|221165991|gb|EED98465.1| general secretion pathway protein D [Burkholderia multivorans CGD1] gi|221171347|gb|EEE03795.1| general secretion pathway protein D [Burkholderia multivorans CGD2] gi|221178018|gb|EEE10430.1| general secretion pathway protein D [Burkholderia multivorans CGD2M] Length = 768 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 112/316 (35%), Gaps = 56/316 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V++ L+ QV ++ I E+ Q+G Q + + + AA G Sbjct: 389 RAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQVASGALLAGTNLAATAGSVAGNS 447 Query: 236 ------GKFVSEGGDFSVKGVLDRFS-------------------FETVLHALERATAIR 270 G S G + G+ + +L + Sbjct: 448 IINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLHNMFGVQGLGALLQYFAGVSDAN 507 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTV 322 L+ P L + + A G T S S + T D G+ LH P + Sbjct: 508 VLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQI 567 Query: 323 LSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 G + L++ TE S NA PS+ R +T+ +G IVL GL++D Sbjct: 568 TDGGILKLQLYTEDSAVDTATTNAQTGPSFTKRSIQSTILADNGEVIVLGGLMQDAYNVS 627 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL IP +G LFR+ R++T + + P ++ + D A+ Sbjct: 628 NSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII---------------ADRDTAQ 672 Query: 442 AFFFNRVNKIYGPKEA 457 A NR + I G A Sbjct: 673 AVTSNRYDYIQGVTGA 688 >gi|170728738|ref|YP_001762764.1| pilus (MSHA type) biogenesis protein MshL [Shewanella woodyi ATCC 51908] gi|169814085|gb|ACA88669.1| pilus (MSHA type) biogenesis protein MshL [Shewanella woodyi ATCC 51908] Length = 562 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 118/278 (42%), Gaps = 28/278 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV- 250 + QV L+ I EV Q G + ++ G SF G +S+ ++ GV Sbjct: 283 QRQVILEAKILEVTLSDGYQQGIEWQNVLGHVGDTDISFGTSPSGSGLSDSITSAIGGVT 342 Query: 251 ---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GA 304 + F T+++ L+ + L+ P +TA + Q A G + T SST G Sbjct: 343 SMKISGADFTTMINLLDTQGDVDVLSSPRVTATNNQKAVIKVGKDEYFVTDVSSTTVAGT 402 Query: 305 TSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY------ 351 T VT+ + G+ L TP + G I L I V + Sbjct: 403 TPVTSPEVELTPFFSGIALDVTPQIDGEGNILLHIHPSVINIKEQTKTIKISGSELELPL 462 Query: 352 ---RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 +R++DT ++ +G +V+ GL+K + L +PLL IP++G LF N + ++T Sbjct: 463 AQSDIRESDTVIKAKTGEVVVIGGLMKSENIDLVSKVPLLGDIPLVGELFTNRSKSLQKT 522 Query: 409 EIFIAATPFLVK-PVAMRDLSRPD---DHYSVEDDAKA 442 E+ + P +V+ ++L R D + ED+ + Sbjct: 523 ELVLLLKPTVVEADTWKQELKRSKELLDRWYPEDEQEQ 560 >gi|281412148|ref|YP_003346227.1| type II and III secretion system protein [Thermotoga naphthophila RKU-10] gi|281373251|gb|ADA66813.1| type II and III secretion system protein [Thermotoga naphthophila RKU-10] Length = 1282 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 115/262 (43%), Gaps = 6/262 (2%) Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V+ F+ +G ++ ++ L + QV + I V R ++ ++ + + Sbjct: 1026 VDSLNNFMVVTGISETIKKELDDIIEKLKKPTK-QVEISAKI--VDRSLIDRLSKETVLE 1082 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + + + FV++ DF + G + + + T LA P + Sbjct: 1083 LTGGNVNVGSSGAGISFFVTDYLDFEKILGEILNSNLSLQFSDQKTNTLDDILASPRIVT 1142 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 SG+ A G + Y T ++ G V + G+ L TP V S I L + + SEP Sbjct: 1143 TSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELDLFVKASEP 1202 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +N ++P R R+A T + + +G TI + GL+++ + +P L +P++G FR Sbjct: 1203 GNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLPFLGDLPVIGQFFR 1260 Query: 400 NSRFNREETEIFIAATPFLVKP 421 N+E+ ++ I T +V+P Sbjct: 1261 TKSENKEKRDLVIFLTVKVVEP 1282 >gi|325521649|gb|EGD00419.1| general secretion pathway protein D [Burkholderia sp. TJI49] Length = 699 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 71/316 (22%), Positives = 112/316 (35%), Gaps = 56/316 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--- 238 + V++ L+ QV ++ I E+ Q+G Q + + + AA G Sbjct: 390 RAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQVASGALLAGTNLAATAGSVAGNS 448 Query: 239 ---VSEGGDFSVKGVLDRFSFETVLHALERA-------------------------TAIR 270 ++ G S G L L L + + Sbjct: 449 IINLTAGTVNSSTGTLTGVGLPANLSNLNQGLNIGWLHNMFGVQGLGALLQYFAGVSDAN 508 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTV 322 L+ P L + + A G T S S + T D G+ LH P + Sbjct: 509 VLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQI 568 Query: 323 LSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 G + L++ TE S NA PS+ R +T+ +G IVL GL++D Sbjct: 569 TEGGILKLQLYTEDSAVDTATTNAQTGPSFTKRSIQSTILADNGEVIVLGGLMQDAYNVS 628 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL IP +G LFR+ R++T + + P ++ S D A+ Sbjct: 629 NSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII---------------SDRDTAQ 673 Query: 442 AFFFNRVNKIYGPKEA 457 A NR + I G A Sbjct: 674 AVTANRYDYIQGVTGA 689 >gi|161523243|ref|YP_001578255.1| general secretion pathway protein D [Burkholderia multivorans ATCC 17616] gi|160340672|gb|ABX13758.1| general secretion pathway protein D [Burkholderia multivorans ATCC 17616] Length = 775 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 112/316 (35%), Gaps = 56/316 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V++ L+ QV ++ I E+ Q+G Q + + + AA G Sbjct: 396 RAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQVASGALLAGTNLAATAGSVAGNS 454 Query: 236 ------GKFVSEGGDFSVKGVLDRFS-------------------FETVLHALERATAIR 270 G S G + G+ + +L + Sbjct: 455 IINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLHNMFGVQGLGALLQYFAGVSDAN 514 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTV 322 L+ P L + + A G T S S + T D G+ LH P + Sbjct: 515 VLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQI 574 Query: 323 LSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 G + L++ TE S N+ PS+ R +T+ +G IVL GL++D Sbjct: 575 TDGGILKLQLYTEDSAVDTATTNSQTGPSFTKRSIQSTILADNGEVIVLGGLMQDAYNVS 634 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL IP +G LFR+ R++T + + P ++ + D A+ Sbjct: 635 NSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII---------------ADRDTAQ 679 Query: 442 AFFFNRVNKIYGPKEA 457 A NR + I G A Sbjct: 680 AVTSNRYDYIQGVTGA 695 >gi|264676762|ref|YP_003276668.1| general secretion pathway protein D [Comamonas testosteroni CNB-2] gi|262207274|gb|ACY31372.1| general secretion pathway protein D [Comamonas testosteroni CNB-2] Length = 793 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 65/294 (22%), Positives = 112/294 (38%), Gaps = 43/294 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------------ITG 221 + V++ L+ QV ++ I EV D Q+G Q S Sbjct: 420 RTVIDKLD-GRRAQVLIEALIVEVSADKAAQLGVQWSSVIRNNGRVLGVLGNGTSISGIS 478 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKG-----------VLDRFSFETVLHALERATAIR 270 + G S + G +++ ++ G V S +++ ++ Sbjct: 479 NIFGLSGAVGNLVNGTPLTDSQASAIGGMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTN 538 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPT 321 L+ P L + + AS G + T S + A T+ D G +L P Sbjct: 539 ILSTPNLMTLDNEEASIMVGENVPFPTGSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQ 598 Query: 322 VLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + G I + + E S G NA + R ++ V + G +VL GL+ D+ Q Sbjct: 599 INENGTIKMAVYQENSAVKQGTANAQSGATTTKRSIESNVLVEDGAIVVLGGLIADEYSQ 658 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +E +PLL IP+LG LFRN+ R++T + + P +++ D Y Sbjct: 659 SQERVPLLGDIPLLGNLFRNTSRERKKTNLMVFLRPTVLRDANSTS-QLSQDRY 711 >gi|295677888|ref|YP_003606412.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1002] gi|295437731|gb|ADG16901.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1002] Length = 572 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 97/242 (40%), Gaps = 15/242 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGG-----------KF 238 QV ++ I E + + +G + S+ G+S+ G S+ G F Sbjct: 332 RPTRQVLIEAQIVEGEQGFSRNLGVRLSLAGTSADGTSRGLTGGTDGTVYDLSARPISGF 391 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ L ALE + ++ P + A G + Y+ Sbjct: 392 DAATAGLTLFAAHATRLLNIELSALESEGHGKIVSSPRVVTADRMKAIVEQGTELPYQ-A 450 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P ++ GR+ L + +AG P+ + T Sbjct: 451 KVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGEQTDAG--PAINTKHVQT 508 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ GGT+ + G+ + D + E +P+L KIP+LGALFR+ +E+ + TP + Sbjct: 509 RVEVEDGGTVSIGGIYETDDRDDVERVPVLGKIPVLGALFRHRTHRDTRSELAVFITPRV 568 Query: 419 VK 420 V+ Sbjct: 569 VR 570 >gi|170681179|ref|YP_001745227.1| general secretion pathway protein GspD [Escherichia coli SMS-3-5] gi|170518897|gb|ACB17075.1| general secretion pathway protein GspD [Escherichia coli SMS-3-5] Length = 686 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|328952531|ref|YP_004369865.1| general secretion pathway protein D [Desulfobacca acetoxidans DSM 11109] gi|328452855|gb|AEB08684.1| general secretion pathway protein D [Desulfobacca acetoxidans DSM 11109] Length = 794 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 68/301 (22%), Positives = 123/301 (40%), Gaps = 35/301 (11%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 T ++ R + E L Y +++ L+I QV +V IAEVR + Sbjct: 452 TPKEGVRIIPDEENNLLVIMAPPYEWKIISRLLKQLDIM-PRQVLNEVLIAEVRLTDDLK 510 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET-------------- 258 G + + S + ++S + + G S V G + + Sbjct: 511 YGLEFLLGQSPTTATESTSDNSGALVASSTSTTIVPGTIQGVDINSPASAQFAAASGLTF 570 Query: 259 -----------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVS 299 +++ L + LA P + A + Q A G + + + Sbjct: 571 VALDTANKLKGLINLLSSEGKVNILASPHIMAANNQEARIMIGEEVPILSSQSIPLVSQT 630 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADT 358 +S +V + G++L P + + G + L I EVS P++ VR A T Sbjct: 631 TSFQTNTVQYRNTGIILTVKPQINAKGLVTLEIAQEVSNATATTTGVTSSPTFTVRHAKT 690 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + T+VL GL+++D+ + + GIP L +IP+LG LF ++ +R++TE+ + TP + Sbjct: 691 QLITGDNQTVVLGGLIREDLTETQAGIPGLRRIPLLGPLFGSTGVSRQKTELVVLITPHI 750 Query: 419 V 419 V Sbjct: 751 V 751 >gi|291614284|ref|YP_003524441.1| type II and III secretion system protein [Sideroxydans lithotrophicus ES-1] gi|291584396|gb|ADE12054.1| type II and III secretion system protein [Sideroxydans lithotrophicus ES-1] Length = 851 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 74/427 (17%), Positives = 158/427 (37%), Gaps = 68/427 (15%) Query: 53 GLNKVIILQVPVDVQ-DVLVSDPTKADV------------VVHSPRTMYLFGKNVGQANV 99 G+N ++ + D++ + V D + AD V + T++++ + Sbjct: 206 GINILLDRDMRNDLKASIFVKDASVADALDLILMQNQLEKKVLNDSTVFIYPNTPAK--- 262 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + + + + D ++ ++ + +I V ++++++ D+ Sbjct: 263 -IKEYQDLVIRTFQLT-NADAKQMQTMIKTMLKTKDIYVNEKNNSLIIR-------DTPE 313 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 AV+++E ++ N E +V L+V + EV L Q+G + Sbjct: 314 AVKMAEKLIASQDIN------------------EPEVMLEVEVLEVLHSKLTQLGVKWPN 355 Query: 220 T-------------GSSSGPSKSFAADFGGKFVSEGGDFSVKG-VLDRFSFETVLHALER 265 +++ + ++ G + G ++ L + Sbjct: 356 QLGLSVNATPATSTATTTSGGAVVTTNTPAVPLTVNGLRHINGDAINVTPLSMTLDLRKE 415 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHF 318 LA P + + A G + T S + AT SV D G+ L Sbjct: 416 LGDSNLLASPRIRVKQHEKAKIMIGDRVPVITNSVTPVATGTPVVTGSVQYLDVGLKLEV 475 Query: 319 TPTVLSPGRI----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 P + G + L + T ++ + R +T + L G T VLAGL+ Sbjct: 476 EPDIHMDGEVAIKTYLEVSTIANQVTNAASGSVAYQIGTRNVNTVLRLKDGETQVLAGLI 535 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 D+ ++ +P L +PILG LF ++ ++ +TEI ++ TP +++ + D+ + Sbjct: 536 NDEDRKSSASVPGLGDLPILGHLFSSNGDDKRKTEIILSITPHIIRNIHRPDVDLAEFWS 595 Query: 435 SVEDDAK 441 ED + Sbjct: 596 GTEDTLR 602 >gi|191171834|ref|ZP_03033380.1| general secretion pathway protein GspD [Escherichia coli F11] gi|215488288|ref|YP_002330719.1| putative type II secretion protein [Escherichia coli O127:H6 str. E2348/69] gi|312968706|ref|ZP_07782915.1| general secretion pathway protein D [Escherichia coli 2362-75] gi|190907869|gb|EDV67462.1| general secretion pathway protein GspD [Escherichia coli F11] gi|215266360|emb|CAS10797.1| putative type II secretion protein [Escherichia coli O127:H6 str. E2348/69] gi|312286924|gb|EFR14835.1| general secretion pathway protein D [Escherichia coli 2362-75] gi|312947523|gb|ADR28350.1| general secretion pathway protein D precursor [Escherichia coli O83:H1 str. NRG 857C] gi|320195111|gb|EFW69740.1| General secretion pathway protein D [Escherichia coli WV_060327] Length = 686 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|189348900|ref|YP_001944528.1| general secretion pathway protein D [Burkholderia multivorans ATCC 17616] gi|189332922|dbj|BAG41992.1| general secretion pathway protein D [Burkholderia multivorans ATCC 17616] Length = 768 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 112/316 (35%), Gaps = 56/316 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V++ L+ QV ++ I E+ Q+G Q + + + AA G Sbjct: 389 RAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQVASGALLAGTNLAATAGSVAGNS 447 Query: 236 ------GKFVSEGGDFSVKGVLDRFS-------------------FETVLHALERATAIR 270 G S G + G+ + +L + Sbjct: 448 IINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLHNMFGVQGLGALLQYFAGVSDAN 507 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTV 322 L+ P L + + A G T S S + T D G+ LH P + Sbjct: 508 VLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQI 567 Query: 323 LSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 G + L++ TE S N+ PS+ R +T+ +G IVL GL++D Sbjct: 568 TDGGILKLQLYTEDSAVDTATTNSQTGPSFTKRSIQSTILADNGEVIVLGGLMQDAYNVS 627 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 +PLL IP +G LFR+ R++T + + P ++ + D A+ Sbjct: 628 NSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII---------------ADRDTAQ 672 Query: 442 AFFFNRVNKIYGPKEA 457 A NR + I G A Sbjct: 673 AVTSNRYDYIQGVTGA 688 >gi|296157578|ref|ZP_06840413.1| general secretion pathway protein D [Burkholderia sp. Ch1-1] gi|295892350|gb|EFG72133.1| general secretion pathway protein D [Burkholderia sp. Ch1-1] Length = 789 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 113/317 (35%), Gaps = 57/317 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ A QV L+ I E+ + +G Q + +S + V+ Sbjct: 394 RAVIDQLD-ARRAQVYLEALIVELNSNTSGNLGIQWQVANNSIFAGTNLQTGSSNSIVNL 452 Query: 242 GGDFS-----------------------------VKGVLDRFSFETVLHALERATAIRTL 272 + + +L AL + L Sbjct: 453 TAGAVAAGAAGAATGGLASAIGTQGLQQGLNIGWIHNIFGVQGLGALLQALSQTADANVL 512 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLS 324 + P L + + A G +T S S +S T D G+ LH P + Sbjct: 513 STPNLITLDNEEAKIVVGTNVPIQTGSYSNLTSSTATSAFNTYDRVDVGLTLHVKPQITD 572 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 G + L++ TE S V G P + R +TV +G IVL GL++D+ Q Sbjct: 573 GGILKLQLYTEDSAIVTGTTNATTNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQV 632 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 +PLL IP +G LFR+ + R +T + + P ++ S A Sbjct: 633 SNSKVPLLGDIPWIGQLFRSEQKTRNKTNLMVFLRPVII---------------SDRGTA 677 Query: 441 KAFFFNRVNKIYGPKEA 457 +A NR + I G + A Sbjct: 678 QAVTSNRYDYIQGVQGA 694 >gi|221134989|ref|ZP_03561292.1| general secretion pathway protein D [Glaciecola sp. HTCC2999] Length = 693 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 68/305 (22%), Positives = 118/305 (38%), Gaps = 46/305 (15%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------- 217 S ++V+ L++ QV ++ I EV +G Q Sbjct: 347 SLEEVIRQLDVR-RAQVQVEAIIVEVFEGDGTTLGVQLVSEEGGGTQFTNGVAGVGSLGV 405 Query: 218 ---------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 + GS+ + DF GG + + + V+ A Sbjct: 406 ALRQAEDREVNRSTTAQDGSAVQAIDTIEGDFTALANILGGANGMIAGIIENGWGAVVQA 465 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317 + T LA P LT + + A F G + T +S+ +V + G+ L Sbjct: 466 VSTDTNSNILATPHLTTMDNEEAFFIVGQEVPIITGTSTGSNNSNPFQTVDRQEVGIKLK 525 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + + L I+ EVS + S R+ TTV + GGTIVL GL+ +D Sbjct: 526 VTPQINEGDAVQLLIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDED 583 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSV 436 +Q+ +PLL IP +G LF+ + ++ + + + P +V+ V M ++S ++ Sbjct: 584 VQESVSKVPLLGDIPFVGHLFKTTTSSKRKRNLMVFLRPTIVRDGVTMNEISHRKYNFIR 643 Query: 437 EDDAK 441 + K Sbjct: 644 AEQLK 648 >gi|331684607|ref|ZP_08385199.1| general secretion pathway protein D [Escherichia coli H299] gi|331078222|gb|EGI49428.1| general secretion pathway protein D [Escherichia coli H299] Length = 686 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|238756264|ref|ZP_04617580.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473] gi|238705519|gb|EEP97920.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473] Length = 660 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 59/285 (20%), Positives = 106/285 (37%), Gaps = 18/285 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++V+ L+I QV ++ I EV+ + +G Q G + + Sbjct: 351 EQVITQLDIR-RAQVLVEAIIVEVQDNDDLNLGVQW-FNRHGGGSNFPDTGASASSISAN 408 Query: 242 GGDFSVKGVLD------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 S+ GV R ++ + AL + LA P++ + A F+ G + Sbjct: 409 NIGSSLNGVAGLATGFYRGNWSGLFTALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPI 468 Query: 296 KTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDM 348 T S +T +V G+ L P + + L I+ EVS G Sbjct: 469 LTGSQTTTGDNIFRTVDRKSVGIKLKVKPQINKGDSVLLEIEQEVSSVAEKTPGGTGDLG 528 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ R V + S +V+ GLL + +PLL IP +G LFR++ + Sbjct: 529 ATFNTRTVKNAVMVGSNNIVVVGGLLDSTSHDITSKVPLLGDIPGIGFLFRSTSQKMVKR 588 Query: 409 EIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFN-RVNK 450 + + P +++ + + D + E A RVN+ Sbjct: 589 NLMLFIRPTIIREQDSYIDASQQKLDKFRQEQGADKGANGQRVNE 633 >gi|323960851|gb|EGB56471.1| general secretion pathway protein D [Escherichia coli H489] Length = 686 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|331659244|ref|ZP_08360186.1| general secretion pathway protein D [Escherichia coli TA206] gi|331053826|gb|EGI25855.1| general secretion pathway protein D [Escherichia coli TA206] Length = 686 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|167560915|ref|ZP_02353831.1| general secretion pathway protein D [Burkholderia oklahomensis EO147] Length = 743 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 115/305 (37%), Gaps = 45/305 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFV 239 + V++ L+ A QV ++ + E+ +G Q + ++ +G + + GG + Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLTTGGVGGGNSI 445 Query: 240 SE-----GGDFSVKGVLDRF-------------SFETVLHALERATAIRTLAEPTLTAIS 281 + +V G L +L + L+ P L + Sbjct: 446 TSLTAGATNPLNVVGALTPGLNIGWLRNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTLD 505 Query: 282 GQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + A G T S ++ + D G+ LH P + G + L++ Sbjct: 506 NEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITDGGILKLQLY 565 Query: 334 TEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 TE S V G + P++ R +TV +G IVL GL++D+ Q +PLL IP Sbjct: 566 TEDSSVVNGTLTSQTGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVANNKVPLLGDIP 625 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 +G LFR+ R +T + + P ++ + A+A NR + I Sbjct: 626 WIGQLFRSEGKTRTKTNLMVFLRPVII---------------GDRETAQAVTSNRYDYIQ 670 Query: 453 GPKEA 457 G A Sbjct: 671 GVTGA 675 >gi|293416407|ref|ZP_06659046.1| general secretion pathway protein D [Escherichia coli B185] gi|291431763|gb|EFF04746.1| general secretion pathway protein D [Escherichia coli B185] Length = 686 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGANNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGHLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|221069105|ref|ZP_03545210.1| general secretion pathway protein D [Comamonas testosteroni KF-1] gi|220714128|gb|EED69496.1| general secretion pathway protein D [Comamonas testosteroni KF-1] Length = 793 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 65/294 (22%), Positives = 113/294 (38%), Gaps = 43/294 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------------ITG 221 + V++ L+ QV ++ I EV D Q+G Q S Sbjct: 420 RTVIDKLD-GRRAQVLIEALIVEVSADKAAQLGVQWSSVIRNNGRVLGVLGNGTSISGIS 478 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKG-----------VLDRFSFETVLHALERATAIR 270 + G S + G +++ ++ G V S +++ ++ Sbjct: 479 NIFGLSGAVGNLVNGTPLTDSQASAIGGMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTN 538 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPT 321 L+ P L + + AS G + T S + A T+ D G +L P Sbjct: 539 ILSTPNLMTLDNEEASIMVGENVPFPTGSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQ 598 Query: 322 VLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + G I + + E S G NA + R ++ V + G +VL GL+ D+ Q Sbjct: 599 INENGTIKMAVYQENSAVKQGTANAQSGATTTKRSIESNVLVEDGAIVVLGGLIADEYSQ 658 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +E +PLL IP+LG LFRN+ R++T + + P +++ + D Y Sbjct: 659 SQERVPLLGDIPLLGNLFRNTSRARKKTNLMVFLRPTVLRDASSTS-QLSQDRY 711 >gi|134294193|ref|YP_001117928.1| general secretion pathway protein D [Burkholderia vietnamiensis G4] gi|134137350|gb|ABO53093.1| general secretion pathway protein D [Burkholderia vietnamiensis G4] Length = 774 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 114/309 (36%), Gaps = 49/309 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------------SIT 220 + V++ L+ A QV ++ I E+ +G Q SI Sbjct: 397 RSVIDQLD-ARRAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPTSGLGNSIV 455 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---SFETVLHALERATAIRTLAEPTL 277 ++G + + + ++ + + F S +L + L+ P L Sbjct: 456 NLTAGTAGATTPGLAANLGTLTQGLNIGWLHNLFGVQSLGALLQYFAGVSDANVLSTPNL 515 Query: 278 TAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 + + A G T S +S + D G+ LH P + G + Sbjct: 516 ITLDNEEAKIVVGQNVPIATGSYLNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILK 575 Query: 330 LRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L++ TE S V G + P++ R +T+ +G IVL GL++D+ Q +PLL Sbjct: 576 LQLYTEDSAVVAGTTSAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLL 635 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 IP +G LFR+ R +T + + P ++ S + A+ NR Sbjct: 636 GDIPWIGQLFRSESKQRAKTNLMVFLRPVII---------------SDRNVAQEVTANRY 680 Query: 449 NKIYGPKEA 457 + I G A Sbjct: 681 DYIQGVTGA 689 >gi|332085659|gb|EGI90823.1| putative general secretion pathway protein D domain protein [Shigella dysenteriae 155-74] Length = 303 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 62/293 (21%), Positives = 110/293 (37%), Gaps = 23/293 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 ++ I EV+ +G Q S +++G AA + GG S Sbjct: 2 LVEAIIVEVQDGNGLNLGVQWSNKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPA 61 Query: 251 LDRFS-------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 D FS + +L AL LA P++ + + ASF G Sbjct: 62 WDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLS 121 Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 +T S +V G L TP V + L I+ EVS N+ P++ Sbjct: 122 GSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNT 181 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V + +G T+VL GLL D ++ +PLL IP++G LFR + R + + + Sbjct: 182 RTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVF 241 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466 P +++ + + + + + + + G ++ ++ + Sbjct: 242 IRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKSKALVGSEDLPVLDENTFN 294 >gi|218691255|ref|YP_002399467.1| general secretion pathway protein D [Escherichia coli ED1a] gi|218428819|emb|CAR09618.1| general secretion pathway protein D precursor [Escherichia coli ED1a] Length = 686 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|190572747|ref|YP_001970592.1| putative general secretion pathway protein D [Stenotrophomonas maltophilia K279a] gi|190010669|emb|CAQ44278.1| putative general secretion pathway protein D precursor [Stenotrophomonas maltophilia K279a] Length = 733 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 80/315 (25%), Positives = 129/315 (40%), Gaps = 27/315 (8%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 V + V + AVE + T L +S + S ++V+ L++ QV ++ + Sbjct: 408 GNVSVSLEVEGDRVGVSAVEETNTLLVRSTPQAW--RSIREVIEKLDVM-PLQVHIEAQV 464 Query: 203 AEVRRDILKQIGFQHSITGSSSG-------PSKSFAADFGGKFVSEGGDFS----VKGVL 251 AEV D + G + +G + A GG + S G + + Sbjct: 465 AEVSLDGDLKYGVNWFFDNAVAGRALTGALGGVTLPAAAGGSWSSFAGAATGGEGLGWAF 524 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TS 306 + V+ AL++ T +R L P++ + A+ G + T + +TG +S Sbjct: 525 TGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGDKVPINTTTVNTGIGTGTYSS 584 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAGDMPSYRVRKADTTV 360 V D GV+L P V G + L I EVS P +K T Sbjct: 585 VQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASNVPDNCNPTERNCNPRISTKKLSTEA 644 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + SG TI+LAGL+ D GIP LS+IP++GALF +E+ + TP +V+ Sbjct: 645 AVQSGDTIMLAGLITDSATDGSSGIPGLSRIPVVGALFGQKSRTSRRSEVIVLLTPSIVR 704 Query: 421 PVAMRDLSRPDDHYS 435 ++ D YS Sbjct: 705 N--GQEARNLTDEYS 717 >gi|170288656|ref|YP_001738894.1| type II and III secretion system protein [Thermotoga sp. RQ2] gi|170176159|gb|ACB09211.1| type II and III secretion system protein [Thermotoga sp. RQ2] Length = 1282 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 115/262 (43%), Gaps = 6/262 (2%) Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V+ F+ +G ++ ++ L + QV + I V R ++ ++ + + Sbjct: 1026 VDSLNNFMVVTGISETIKKELDDIIEKLKKPTK-QVEISAKI--VDRSLIDRLSKETVLE 1082 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + + + FV++ DF + G + + + T LA P + Sbjct: 1083 LTGGNVNVGSSGAGISFFVTDYLDFEKILGEILNSTLSLQFSDQKTNTLDDILASPRIVT 1142 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 SG+ A G + Y T ++ G V + G+ L TP V S I L + + SEP Sbjct: 1143 TSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELDLFVKASEP 1202 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +N ++P R R+A T + + +G TI + GL+++ + +P L +P++G FR Sbjct: 1203 GNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLPFLGDLPVIGQFFR 1260 Query: 400 NSRFNREETEIFIAATPFLVKP 421 N+E+ ++ I T +V+P Sbjct: 1261 TKSENKEKRDLVIFLTVRVVEP 1282 >gi|329895109|ref|ZP_08270837.1| General secretion pathway protein D [gamma proteobacterium IMCC3088] gi|328922510|gb|EGG29849.1| General secretion pathway protein D [gamma proteobacterium IMCC3088] Length = 672 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 119/320 (37%), Gaps = 51/320 (15%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----------------SITG 221 ++ + V+ L+I QV ++ I E+ + +G Q S G Sbjct: 336 AALESVIYQLDIR-RAQVLVEAIIVEMEVIDGQSLGLQWLFANDSGVYGSSVSSDVSTAG 394 Query: 222 SSSGPSKSFAADFGGKFV-------------SEGGDFSVKGVLDRFSFETVLHALERATA 268 + S AD S G + + S +L+AL++ + Sbjct: 395 AISSAVLGGNADAANPVGDFDLGQLAAALAGSPGLTLGWGAIDNDLSMTVILNALKKQSN 454 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHF 318 L+ PTL + Q A T G + T + + + ++ + G+ L Sbjct: 455 ANILSTPTLLTLDNQEAYITVGQNVPFVTGAYTNTGSGGSGVQNPFQTIERENVGITLTV 514 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 TP + + L I+ EVS + RK T V G T+VL GL+KD++ Sbjct: 515 TPHINDGDSVVLDIEQEVSSLTGLSSIASDLITNERKIQTKVLAGDGKTVVLGGLIKDNV 574 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 Q + +P+L IP+LG LFRN +T + I P +++ DD Sbjct: 575 QDGSQRVPVLGSIPLLGRLFRNDAVEVTKTNLLIFIRPTIIR----------DDRALDNA 624 Query: 439 DAKAFFFNRVNKIYGPKEAS 458 A + F R ++ + S Sbjct: 625 TAGKYKFIREQQLQRRAKGS 644 >gi|170765481|ref|ZP_02900292.1| general secretion pathway protein GspD [Escherichia albertii TW07627] gi|170124627|gb|EDS93558.1| general secretion pathway protein GspD [Escherichia albertii TW07627] Length = 686 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPETN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|238022253|ref|ZP_04602679.1| hypothetical protein GCWU000324_02160 [Kingella oralis ATCC 51147] gi|237866867|gb|EEP67909.1| hypothetical protein GCWU000324_02160 [Kingella oralis ATCC 51147] Length = 699 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 99/260 (38%), Gaps = 24/260 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF--------------QHSIT------G 221 ++ L++ QV ++ I E + +++G + G Sbjct: 433 NALIEELDVP-ARQVMVEARIVEASDTLSRELGVKFGGVRAGSTSWANNWGLATERNSRG 491 Query: 222 SSSGPSKS-FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 +G S F + S G +V + L A E +T++ P + Sbjct: 492 VRNGSSGVLFEPNINVPVASAVGSIAVVKSFSSVTLGLELSASEAEGRSKTISTPRVLTQ 551 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 Q A G Q Y T S G+T+ + D + L P + +I + + P Sbjct: 552 DRQEAEIKQGYQVPY-TTRDSDGSTTTSFKDAVMSLKVLPRITPDNKIIMDVTINKDTPD 610 Query: 341 IGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + PS R + T + GGT+V+ G+ ++ IQ + +P+L +P+LG LF+ Sbjct: 611 NTYQSSEGEPSIRTQSVKTQAMIEDGGTLVVGGVYQEVIQNNVKKVPMLGDLPVLGNLFK 670 Query: 400 NSRFNREETEIFIAATPFLV 419 N E+ TP ++ Sbjct: 671 TRSRNNSRNELLFFITPRIM 690 >gi|298527731|ref|ZP_07015135.1| general secretion pathway protein D [Desulfonatronospira thiodismutans ASO3-1] gi|298511383|gb|EFI35285.1| general secretion pathway protein D [Desulfonatronospira thiodismutans ASO3-1] Length = 703 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 77/346 (22%), Positives = 132/346 (38%), Gaps = 34/346 (9%) Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ-- 158 ++G G+ + + D + +LR D + + + V + D Sbjct: 340 ILGSAGENIYVYYVQYG-DAEEIVESLRGVF-DQGVEADSEVGREAVS-EVASEDDQDVF 396 Query: 159 ---------------RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 + + +++ YA S VM L++ QV ++V IA Sbjct: 397 APGMVSGELAGPVRFTVDRATNSIITRCRAPDYARVLS--VMEKLDL-YPKQVLIEVIIA 453 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 EVR ++G S G S F + G V V + L+A Sbjct: 454 EVRLSDATKMGVDWQYI-LSFGDRLSGELRFDPAADALPGAGGVFRVESSRRLKAALYAA 512 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTGATSVTTHDYGV 314 ++ L+ PTL A + A+ G Q + T + S T++ D G+ Sbjct: 513 VDDAKLQILSTPTLLASDNRPATINIGDQVPFPTSTRQRLDDTDTSEVIDTTIQYRDTGI 572 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 +L TP + G + + I EVS V P R A+TT+ + TIV+AGL Sbjct: 573 ILRVTPKINRHGMVRMEIVQEVSSLTARRVEGITAPVINTRHAETTLAVDDQETIVIAGL 632 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++ + + G+P +IP++ LF S E TE+ + TP ++ Sbjct: 633 MEQERSRGYSGVPGFRRIPVVKHLFGTSETRFENTELLVFITPHVI 678 >gi|304310058|ref|YP_003809656.1| General secretion pathway D protein, outer membrane secretin [gamma proteobacterium HdN1] gi|301795791|emb|CBL43990.1| General secretion pathway D protein, outer membrane secretin [gamma proteobacterium HdN1] Length = 721 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 75/390 (19%), Positives = 133/390 (34%), Gaps = 48/390 (12%) Query: 77 ADVVVHSPRTMYLFGKNVGQ-ANVILIGHDGKQMLNLD--ILIERDIAHLEMTLRRFIAD 133 AD V S L G GQ G Q + A L ++ Sbjct: 288 ADAVKISE---VLRGIVTGQATTPTSTTAGGMQTASRTPGSSFGNSSAGLGGNSSMGMSG 344 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAG 192 + + G IQ ++ +T + R ++ + ++ L++ Sbjct: 345 AGVSSSTSRQ----RGTSTPIQAGNITIQADDTLNALVVRASPSDMGEIRSLIKQLDVR- 399 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITG--------SSSGPSKSFAADFGGKF------ 238 QV ++ I EV +G Q + S S +A G Sbjct: 400 RAQVLIEAAIVEVTGSAGNSLGVQWGAANENRVVGGTNFSNVGNSISALLGAALSSSGSD 459 Query: 239 ------------VSEGGDFSVKG----VLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + ++ G + F +L A+ A+ L+ P++ + Sbjct: 460 STGTTSSTTTTMPTLSNGITLGGGHRNSAGKVDFGLILQAVNTASNTNVLSTPSIMTLDN 519 Query: 283 QSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + A G + T S + +V D G+ L P V + I LR+ E S Sbjct: 520 EEAEILVGQNVPFITGNQLSYSGTNPFQTVERKDVGLNLKVIPQVNAGDTISLRVTQEAS 579 Query: 338 EPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 N R +TT+ G IVL GL++D + + +PLL IP++GA Sbjct: 580 SIADSSNVKTTDVITNKRLINTTILASDGQVIVLGGLMEDTLSDAVQKVPLLGDIPLIGA 639 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LFR++ +E+ + + P +++ A + Sbjct: 640 LFRSTSKVQEKRNLLLFLRPTVIRDDAKAE 669 >gi|330938340|gb|EGH41971.1| type II and III secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 247 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 8/233 (3%) Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + +F++ +++A+E + TLA P+L A++GQS Sbjct: 6 NVTPGAVGGITPSIPLNNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQS 65 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---- 340 ASF +GG+ + S+ ++GV L TPTV+ RI L++ EVSE Sbjct: 66 ASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAG 125 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 I + +P+ +R+ DT++ L G + V++GL+ + P L IPILGA FR+ Sbjct: 126 ITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRS 185 Query: 401 SRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSV--EDDAKAFFFNRVN 449 S+ R+E E+ + TP LV+P+A R S P + + +F + Sbjct: 186 SQIQRDERELLMIVTPHLVQPLAANARLPSLPGEGLRTYDPSFPRLYFLENGD 238 >gi|126176026|ref|YP_001052175.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS155] gi|217971714|ref|YP_002356465.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS223] gi|125999231|gb|ABN63306.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS155] gi|217496849|gb|ACK45042.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS223] Length = 559 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 67/296 (22%), Positives = 116/296 (39%), Gaps = 23/296 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L ++ + ++ V + L + +N + QV L+ I EV Sbjct: 240 LTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEVT 299 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHA 262 Q G Q G + G +S+ ++ GV + F T+++ Sbjct: 300 LSDGYQQGIQWDNVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMINL 359 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GATSVTTHDY------- 312 L+ + L+ P +TA + Q A G + T SST G VTT Sbjct: 360 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVGGTPPVTTPQVELTPFFS 419 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELP 363 G+ L TP + S G + L + V + + +R++DT + Sbjct: 420 GIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRAA 479 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +++ GL+K + ++ +PLL IP LG LF+N +++TE+ I P +V Sbjct: 480 SGDVVIIGGLMKSESIEVVSQVPLLGDIPYLGELFKNRSKQKKKTELIILLKPTVV 535 >gi|323188610|gb|EFZ73895.1| general secretion pathway protein D [Escherichia coli RN587/1] Length = 686 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|198283019|ref|YP_002219340.1| type IV pilus secretin PilQ [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665348|ref|YP_002425223.1| fimbrial assembly protein PilQ, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247540|gb|ACH83133.1| type IV pilus secretin PilQ [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517561|gb|ACK78147.1| fimbrial assembly protein PilQ, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 784 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 96/272 (35%), Gaps = 44/272 (16%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS----------ITGSSSGPSKSFAADFGGKFV- 239 QV ++ I +V + +G I S + + GG + Sbjct: 495 RPVPQVLIEARIVQVTTSAAQSLGVNWGGTYTSGGGGGIVNLSGTGATGVTSTQGGAYPM 554 Query: 240 --------------------------------SEGGDFSVKGVLDRFSFETVLHALERAT 267 F++ L AL+ Sbjct: 555 SGTTTTTGTGFTTPALVNLVPSTAGTALASMNPASLGFALGTAAGNRILNLQLQALQADN 614 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + ++ P + + A G + Y+ +SS GAT+V+ + L TP + G+ Sbjct: 615 RAKIISSPKVLTQDNEKAVIEQGQEIPYQQATSS-GATAVSFKKAVLSLDVTPHISPNGK 673 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I L + +P ++ T + + +G T+V+ G+ D Q + G+PL Sbjct: 674 ITLDVDARNDQPNYAQAMPSGIPINTQQVKTKLLVNNGQTVVIGGIYTDSTTQNETGVPL 733 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L IP+LG LF++ + +TE+ + TP +V Sbjct: 734 LRDIPLLGWLFKSHINSVAKTELLVFLTPKVV 765 >gi|254038140|ref|ZP_04872198.1| general secretion pathway protein D [Escherichia sp. 1_1_43] gi|226839764|gb|EEH71785.1| general secretion pathway protein D [Escherichia sp. 1_1_43] gi|323971766|gb|EGB66992.1| general secretion pathway protein D [Escherichia coli TA007] Length = 686 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDAN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|323498120|ref|ZP_08103124.1| type IV pilus biogenesis protein PilQ [Vibrio sinaloensis DSM 21326] gi|323316831|gb|EGA69838.1| type IV pilus biogenesis protein PilQ [Vibrio sinaloensis DSM 21326] Length = 561 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 62/264 (23%), Positives = 111/264 (42%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGGKFV 239 + +++ L+I QV ++ I V L ++G + + ++ + S ++ + Sbjct: 298 RDIIDTLDIP-VKQVQIEARIVTVNEGNLDELGVRWGFSSTNGNNTVGGSIESNLFQAGL 356 Query: 240 SEGGDFSVKGVLDRFSFETVLHA----------------------LERATAIRTLAEPTL 277 EG V L+ T A L+R + ++ P L Sbjct: 357 LEGDTLPVDDFLNVNLAATSTTASSIAFQVAKLGSDLLLDLELSALQRESKAEVISSPRL 416 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + + A G + Y SSS+GATSVT + L TP + R+ L + Sbjct: 417 ITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQD 475 Query: 338 EP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 P V+ G+ + ++ T V + +G T+VL G+ + + + +PLL +P+LG Sbjct: 476 RPGDVVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHSVTDTVDKVPLLGDLPVLG 535 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR S ++E+ I TP +V Sbjct: 536 ALFRRSYQQMGKSELLIFVTPKVV 559 >gi|332701375|ref|ZP_08421463.1| general secretion pathway protein D [Desulfovibrio africanus str. Walvis Bay] gi|332551524|gb|EGJ48568.1| general secretion pathway protein D [Desulfovibrio africanus str. Walvis Bay] Length = 746 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 105/256 (41%), Gaps = 17/256 (6%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEG 242 V+ L+I QV ++V IAEV Q+G + + S F+ + G Sbjct: 475 VIEKLDI-YPKQVLIEVIIAEVSLTDETQLGIDWRYLLDMTGNASIDFSLSNNPSTFTSG 533 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------- 295 ++ +D L AL + + L+ P + + + A G + Sbjct: 534 LAATL---VDGDRLRATLRALASSNRTQILSSPHILSSNHSEAKIDVGQEVPILTQTTET 590 Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPS 350 + S+ ++ + G++L TP + G + + I E+S V A + P Sbjct: 591 VDTTDPDNVSSVQQNIQYRNTGILLSVTPHINERGLVRMEISQEISSIEETSVGAINSPL 650 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R R A TTV + TIV+ GL++ + + +P + +IP+L LF + + E+ Sbjct: 651 FRKRLATTTVVVNDEQTIVIGGLMEQENTDNENNVPFVRRIPLLKYLFGYELKSFDNREL 710 Query: 411 FIAATPFLVKPVAMRD 426 I TP +V+ D Sbjct: 711 LIFITPHVVESREDND 726 >gi|288942699|ref|YP_003444939.1| general secretion pathway protein D [Allochromatium vinosum DSM 180] gi|288898071|gb|ADC63907.1| general secretion pathway protein D [Allochromatium vinosum DSM 180] Length = 733 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 65/297 (21%), Positives = 123/297 (41%), Gaps = 17/297 (5%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILK 211 + +V + ++ S + + KK+++ L QV ++ TI E+ Sbjct: 429 ELEMSSSVNIVADAVNNSLLVRASPRDYKKILDALKQLDILPLQVLVEATIVEITLSGSL 488 Query: 212 QIGFQHSITGSSSGP--SKSFAADFGGKFVSEGG----DFSVKGVLDRFSFETVLHALER 265 + G Q + G + S F S G F+ V + + + L AL Sbjct: 489 KYGVQWELFGPGADGKSFASLDGTFDDAETSGIGTMFPGFNWAMVSNPDTIKATLSALAG 548 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGVVLHFT 319 + L+ P++ + Q+A G + T +T+ ++ D GV+L Sbjct: 549 DNLLNVLSSPSVMVMDNQTAKIQVGREVPIATSKQDGTSTTDRTYTTISYKDTGVILTVK 608 Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P V G + L I+ EVS + + PS++ R ++V + S +VL GL++D Sbjct: 609 PRVTPGGLVQLEIEQEVSTVFEENASGLNSPSFKKRTITSSVAVRSNQAVVLGGLIEDTR 668 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 K+GIP L +P++G LF + + TE+ + TP ++ +D+ + + Sbjct: 669 SDGKQGIPGLYSLPVVGGLFGETSKSSTRTELVVVLTPKVI--ANDQDIESVTEDFR 723 >gi|309785192|ref|ZP_07679823.1| general secretion pathway protein D [Shigella dysenteriae 1617] gi|308926312|gb|EFP71788.1| general secretion pathway protein D [Shigella dysenteriae 1617] Length = 681 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 370 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 429 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627 >gi|54310371|ref|YP_131391.1| putative MSHA biogenesis protein MshL [Photobacterium profundum SS9] gi|46914812|emb|CAG21589.1| putative MSHA biogenesis protein MshL [Photobacterium profundum SS9] Length = 556 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 77/317 (24%), Positives = 122/317 (38%), Gaps = 33/317 (10%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 ++E ++ G R+I S +A +S R K+ +++ + QV Sbjct: 229 QLEKAVQAMIGSGEGRSIVVSPQASLISVRAYPNELRE------VKEFLSVSKKRLKRQV 282 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPS------KSFAADFGGKFVSEGGDFSVKGV 250 L+ I EV Q G S SS G + +A GG +S Sbjct: 283 VLEAKIMEVTLSDGYQQGVNWSNITSSIGGTDIVFGRTGPSALPGGDAISALLGGQTNLT 342 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----------SS 300 + +FE VL LE + L+ P +TA + Q A GG + T S+ Sbjct: 343 ISDGNFEAVLSFLETQGDLNVLSSPRVTAANNQKAVIKVGGDQYFVTDISGGEVSGDNST 402 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--------- 351 S +T G+ L TP + G + L + V E V D+ + Sbjct: 403 SAPDIELTPFFSGISLDVTPQIDDEGGVLLHVHPTVVEVVNETKEIDLGATFGVYKLPLA 462 Query: 352 --RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R++D+ + SG +V+ GL+K I +P L IP LG LFRN + +TE Sbjct: 463 KSSIRESDSVIFARSGDVVVIGGLMKSAINDQVSKVPFLGDIPGLGHLFRNVNKVKSKTE 522 Query: 410 IFIAATPFLVKPVAMRD 426 + I P +V + Sbjct: 523 LVILLKPTVVDEQTWQQ 539 >gi|37524117|ref|NP_927461.1| hypothetical protein plu0091 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783540|emb|CAE12386.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 344 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 68/337 (20%), Positives = 133/337 (39%), Gaps = 42/337 (12%) Query: 98 NVILIGH--DGKQMLNL-DILIERDIAHLEMTLRRFIA-----DSNIRVEMVSDTVVLHG 149 +V L + ++ +L +L D + M LR+ + + + +++++L Sbjct: 35 SVELFDQSVNETEIQSLSTVLQYADAERIAMNLRQNTPALITKEGKVDFDPETNSLIL-- 92 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 QD+ A+ +++L + Q QV + I R+ Sbjct: 93 -----QDTPIAIAQIKSWLKEIDTPQ------------------QQVQITAHIVTSSREA 129 Query: 210 LKQIGFQHSI----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 L ++G + ++S + F++ + E L ALE+ Sbjct: 130 LHELGIYWGMPIGEQINTSTGINRLNINQAANDNMHRFAFNIARIHTSL-LEMELSALEQ 188 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + +A P LTA Q AS G Y VS ++V + + + TP +L Sbjct: 189 ENQLDIIASPRLTASHQQLASIKQGSDIPY--VSQEKEKSTVQFKEAVLGMEVTPHILRK 246 Query: 326 GRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +I L ++ + P I ++ G+ + ++ T V + +G T++L G+ + + + Sbjct: 247 NKIRLSLKISQNMPGISISQGGGENLTIDKQEIITQVTVKNGETLILGGIFQQKKGEQTQ 306 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P LS IP+LG+LF E+ I TP L+ Sbjct: 307 KVPYLSDIPLLGSLFNQKAHKHSRRELVIFITPQLMD 343 >gi|330815003|ref|YP_004358708.1| General secretory pathway protein D [Burkholderia gladioli BSR3] gi|327367396|gb|AEA58752.1| General secretory pathway protein D [Burkholderia gladioli BSR3] Length = 787 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 114/320 (35%), Gaps = 60/320 (18%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236 + V++ L+ QV ++ I E+ +G Q + ++ S + G Sbjct: 391 RAVIDQLDER-RAQVYIEALIVELNSSTSANLGIQWQVANNALYAGSSLGSGINGVGNTI 449 Query: 237 -----------------------KFVSEGGDFS-VKGVLDRFSFETVLHALERATAIRTL 272 +S G + +K + +L A + L Sbjct: 450 TNLTATAATTSLPNGVNSAAAAAATLSPGLNIGWLKNMFGITGLGALLQAFSGSNDANIL 509 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLS 324 + P L + + A G T S +S + D G+ LH P + Sbjct: 510 STPNLVTLDNEEARIVVGQNVPIATGSYANLTSGSNSNAFNTFDRQDVGLTLHVKPQITE 569 Query: 325 PGRIGLRIQTEVSEPVIGVNAG-------DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 G + L+I TE S V + +P++ R +TV +G IVL GL++D+ Sbjct: 570 GGILKLQIYTEDSSVVPSATSSGSSSSQVGVPTFNKRSIQSTVLCDNGEIIVLGGLMQDN 629 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 Q +PLL IP +G LFR+ R +T + + P ++ S E Sbjct: 630 YQVGNNKVPLLGDIPWIGQLFRSEAKQRSKTNLMVFLRPVIL---------------SDE 674 Query: 438 DDAKAFFFNRVNKIYGPKEA 457 +A NR + I G + A Sbjct: 675 ATTQAVTANRYDYIQGVQGA 694 >gi|163849487|ref|YP_001637530.1| general secretion pathway protein D [Methylobacterium extorquens PA1] gi|163661092|gb|ABY28459.1| general secretion pathway protein D [Methylobacterium extorquens PA1] Length = 794 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 22/295 (7%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A E + + + + RNQY +++ L+ A QV L+ IAEV + Q G Q + Sbjct: 471 ADEANNSLVISATRNQYDKIL--RILGRLD-AMPTQVLLETVIAEVTLNNELQFGVQWFL 527 Query: 220 TGSSS-------GPSKSFAADFGGKFV----SEGGDFSVKGVLDRFSFETVLHALERATA 268 S S ++S A G + G +L+ F VL+AL+ T Sbjct: 528 KNSGSRFNLAQADTNRSVAQGTSGTDALIKAAARGVPGFNYLLNASDFNVVLNALQGVTR 587 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPT 321 + ++ P +T + ++A G Q S + + D GV+L TP Sbjct: 588 VNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVILSVTPR 647 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 V G + L I EVS+ V + + P+ R R+ T+V + G ++ + G++++ Q Sbjct: 648 VNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAVNDGHSLAIGGMVQEKAQI 707 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 E +PLL +PI+G FRN R TE+ + P +++ D D Sbjct: 708 TNESVPLLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEADRIAEDFRQQ 762 >gi|306816695|ref|ZP_07450827.1| general secretion pathway protein D precursor [Escherichia coli NC101] gi|305850260|gb|EFM50719.1| general secretion pathway protein D precursor [Escherichia coli NC101] Length = 686 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGSVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|256024452|ref|ZP_05438317.1| general secretion pathway protein D precursor [Escherichia sp. 4_1_40B] Length = 686 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|218701737|ref|YP_002409366.1| general secretion pathway protein D [Escherichia coli IAI39] gi|227887667|ref|ZP_04005472.1| type II secretion protein GspD [Escherichia coli 83972] gi|301019909|ref|ZP_07184044.1| general secretion pathway protein D [Escherichia coli MS 196-1] gi|218371723|emb|CAR19573.1| general secretion pathway protein D precursor [Escherichia coli IAI39] gi|227835063|gb|EEJ45529.1| type II secretion protein GspD [Escherichia coli 83972] gi|299882007|gb|EFI90218.1| general secretion pathway protein D [Escherichia coli MS 196-1] gi|307555055|gb|ADN47830.1| general secretion pathway protein GspD [Escherichia coli ABU 83972] Length = 686 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|222109918|ref|YP_002552182.1| type IV pilus secretin pilq [Acidovorax ebreus TPSY] gi|221729362|gb|ACM32182.1| type IV pilus secretin PilQ [Acidovorax ebreus TPSY] Length = 696 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 102/258 (39%), Gaps = 24/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------- 225 ++++ L++ QV ++ I E R + +G + + G Sbjct: 436 RQLLATLDVP-VRQVMIEARIVEARDTFGRSLGVRLGGGSRTGGSAVGGTYDNVAGPTGG 494 Query: 226 ----PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 P S A G S+ L A+E + ++ P L Sbjct: 495 SGMSPFVSLPASLSGVSTVGSFALSIFNSNASRFLSLELSAMEADGQGKIVSSPRLITAD 554 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A G ++ Y +V++ GAT++ + L TP + G I L + +V++ Sbjct: 555 QTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVTPQITPEGNIILDL--DVNKDSR 611 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G + + + T V + +GGT+V+ G+ + + + IP+L +P++G LF+N Sbjct: 612 GESTTQGVAIDTKHIKTQVLIENGGTVVIGGIFEMEETNQENKIPVLGDVPVVGNLFKNR 671 Query: 402 RFNREETEIFIAATPFLV 419 + E+ + TP ++ Sbjct: 672 TKESTKREMLVFITPKVI 689 >gi|238897480|ref|YP_002923157.1| putative protein exporter, transport across outer membrane (General Secretory Pathway) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465235|gb|ACQ67009.1| putative protein exporter, transport across outer membrane (General Secretory Pathway) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 687 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 70/334 (20%), Positives = 126/334 (37%), Gaps = 47/334 (14%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------- 222 +Q S + ++ L+I QV ++ I EV G Q S Sbjct: 342 TASQDVMQSIRSIIEQLDIR-RAQVHVEALIVEVAEISDINFGVQWQANNSLIQFNNGHQ 400 Query: 223 ---------------SSGPSKSFAADFGGKFVSE---------GGDFSVKGVLDRFSFET 258 +G + + F VS G K + + ++ Sbjct: 401 IPLGALTLARRHAESKTGNTLNQNETFLPSQVSSDISLLSKLLSGFSGAKVGIIKGDWQA 460 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYG 313 ++ A++ +++ L+ P++T + Q ASF G T S ++ +V G Sbjct: 461 LVQAVKNDSSVNVLSTPSITTLDNQEASFMVGEDVPVLTGSAANANNTNPFNTVERRKIG 520 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V+L TP + + L I+ EVS+ + G D+ + RK TTV G IVL GL Sbjct: 521 VMLKVTPQINEGNTVQLLIEQEVSK-IQGETKLDI-KFAERKLKTTVLADDGQLIVLGGL 578 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP------VAMRDL 427 L ++ + +P+L IPILG LF+++ + + + I P +++ ++ R Sbjct: 579 LDEESGESVSKVPVLGDIPILGHLFKSTVNKKTKRNLMIFIRPTILRDGLSADGISQRKY 638 Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 ++ R + P + E E Sbjct: 639 HYMRAEQLYKNHPGLSLMPRTKQPLLPADGKESE 672 >gi|209520029|ref|ZP_03268806.1| type IV pilus secretin PilQ [Burkholderia sp. H160] gi|209499514|gb|EDZ99592.1| type IV pilus secretin PilQ [Burkholderia sp. H160] Length = 569 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 15/242 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGG-----------KF 238 QV ++ I E + +G + S+ G+S+ G SK + G F Sbjct: 329 RPTRQVLIEAQIVEGDHGFSRNLGVRLSLAGTSADGTSKGLSGGADGTVYDLSARPISGF 388 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ L ALE + ++ P + A G + Y+ Sbjct: 389 DAATAGLTLFAAHATRLLNIELSALESEGHGKIVSSPRVVTADRMKAIVEQGTELPYQ-A 447 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P ++ GR+ L + +AG P+ + T Sbjct: 448 KVGQGISGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGAQTDAG--PAINTKHVQT 505 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ GGT+ + G+ + + E +P+L KIPILGALFR+ + +E+ + TP + Sbjct: 506 RVEVEDGGTVSIGGIYETSDRDDVERVPILGKIPILGALFRDRTHSDTRSELAVFITPRV 565 Query: 419 VK 420 V+ Sbjct: 566 VR 567 >gi|254429767|ref|ZP_05043474.1| general secretion pathway protein D [Alcanivorax sp. DG881] gi|196195936|gb|EDX90895.1| general secretion pathway protein D [Alcanivorax sp. DG881] Length = 694 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 71/329 (21%), Positives = 128/329 (38%), Gaps = 34/329 (10%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D L L+ F +++ + S +A E + ++ + Sbjct: 276 DAKTLAELLKNFADGASVTKAGGDSKTATAASSNNSKVSIQADESLNALVIRAEPSMM-- 333 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + V++ L++ Q+ ++ I E+ + K +GFQ+ + SG A +FGG Sbjct: 334 RELQSVISQLDVR-RAQILIEAAIVEISGEQGKNLGFQYVGGSNESGVG---AVNFGGGG 389 Query: 239 VS----------------EGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTL 277 +S GD G+ + ++ AL ++ + L+ P++ Sbjct: 390 LSINSIVQALATDDPSGLSLGDGITAGLGETDSNGDLKWGALVQALSTSSDVNLLSTPSI 449 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + AS G + T S+ T++ D G+ L TP V I L Sbjct: 450 LTLDNEEASIVVGENVPFVTGQSTNTGSGVSNPFTTIQREDVGLTLKVTPHVAGLSTIRL 509 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ E S RK +TV TI L GL+KDDI+ +PLL Sbjct: 510 ELEQENSAVKDSAGDAVDIVTTTRKLQSTVLADDAETIALGGLIKDDIRVTVRKVPLLGD 569 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG LFR++ +R ++ + + P ++ Sbjct: 570 IPFLGFLFRSTSKDRVKSNLMVFLKPTIL 598 >gi|85704683|ref|ZP_01035785.1| general secretion pathway protein D [Roseovarius sp. 217] gi|85671091|gb|EAQ25950.1| general secretion pathway protein D [Roseovarius sp. 217] Length = 648 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 67/371 (18%), Positives = 132/371 (35%), Gaps = 41/371 (11%) Query: 102 IGHDGKQMLNLDILIE-RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + + + + + + L +R+ E + T V G+ ++ Q A Sbjct: 240 LDRPQRSIATEVVHLNYANATDLADVIRQSFGAPEASTEGAAPTAVPGGITIVAEEQQNA 299 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-- 218 + ++ + ++ DQV ++ I E+ + + FQ Sbjct: 300 LIITAPTDRIASITGAVRGLDQR---------PDQVLIEAVIFELSVESFSDLSFQFGGV 350 Query: 219 ITGSSSGP-----------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 I G++ G + + G + GG D+ L AL + Sbjct: 351 IDGATVGGVEFALQGRPTLTSLVSTVLAGNAPTGGGTGGSIAAFDKSGIGGFLAALASKS 410 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHF 318 + + L+ P++ ++ + A + T S ST ++ D G+ L Sbjct: 411 STKLLSTPSILTLNNREAEIVVAQNVPFVTGSFSTVGDSAVPNQPFQTIQRQDVGLTLTV 470 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 TP + + L I EVS +A R+ T V + G I+L GLL++ Sbjct: 471 TPQITRDKTVRLEINQEVSNLTNAASAAGGEITSKRELSTNVLVRDGHVIMLGGLLENGS 530 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA---------MRDLSR 429 + + +P LS++P+LG LF+ N + + + P ++ R+ R Sbjct: 531 GSVNQRVPGLSELPLLGRLFKGRSVNENQRILLVMLRPRILSSDEEARELTKRLAREAKR 590 Query: 430 PDDHYSVEDDA 440 D+ + DD Sbjct: 591 AADYIAPADDG 601 >gi|325498531|gb|EGC96390.1| type II secretion protein GspD [Escherichia fergusonii ECD227] Length = 686 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|188997001|ref|YP_001931252.1| type II and III secretion system protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932068|gb|ACD66698.1| type II and III secretion system protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 602 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 20/247 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKS------FAADFGG 236 Q+ ++ I +V LK +G Q + ++ G S S +A DF Sbjct: 354 PYQIAIEARIVQVSTSNLKDLGIQWGGSATNIDNNNTKIITGGGSTSVISGGRYAVDFPS 413 Query: 237 KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + G F++ V + L AL+ + L++P + I G++A + G + Sbjct: 414 SSATFPGGFAIGFVFGGLQNFLDVRLSALQSIGRSKILSKPQIVTIDGETAEISQGYEVP 473 Query: 295 YKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 Y T ++ G T SV+ + L+ TP + G I + I P P + Sbjct: 474 YTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDIIITQDIPDFKNLILGNPPIQ 533 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + + V G I + G+L+ G+P L IPILG LF+ + + E+ I Sbjct: 534 TKTVTSKVVAKDGSVIAIGGILEKTEDLKDSGVPGLMNIPILGYLFKENYKQEKTNELLI 593 Query: 413 AATPFLV 419 +P +V Sbjct: 594 FLSPRIV 600 >gi|54310534|ref|YP_131554.1| putative type II secretory pathway, component EpsD [Photobacterium profundum SS9] gi|46914977|emb|CAG21752.1| putative type II secretory pathway, component EpsD [Photobacterium profundum SS9] Length = 670 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 113/287 (39%), Gaps = 42/287 (14%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------------------- 219 + + ++ L+I QV ++ I E+ G Q+ Sbjct: 330 ALESIIAQLDIR-RAQVLIEAMIVELSEGDGINFGVQYGSADGGVIQFGNSNVPISQYAI 388 Query: 220 ---------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 + ++ +++ DF GG + + +++A+ Sbjct: 389 GLQEAQDVPGSTVINSDGTTTINEATQGDFSTLASVLGGVNGAALGIVMGDWTMLVNAVA 448 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFT 319 + L+ P++T + ASF G + T S+ +V + G+ L+ T Sbjct: 449 TDSNSNILSSPSITVLDNSEASFIVGEEVPVVTGSTSSSSNDNPFQTVERKEVGIKLNVT 508 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + L+I+ EVS + A D+ + R+ +TTV + G I L GL+ ++ + Sbjct: 509 PQINEGDSVQLKIEQEVSSVLGASGAVDV-RFAKRQINTTVLVKDGQMIALGGLISEETK 567 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + IP+L IP LG LF+++ +T + + P +++ D Sbjct: 568 ESESKIPILGDIPFLGFLFKSTNTTTAKTNLMVFIKPTIIRDGVTAD 614 >gi|319786312|ref|YP_004145787.1| type IV pilus secretin PilQ [Pseudoxanthomonas suwonensis 11-1] gi|317464824|gb|ADV26556.1| type IV pilus secretin PilQ [Pseudoxanthomonas suwonensis 11-1] Length = 619 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 51/266 (19%), Positives = 105/266 (39%), Gaps = 28/266 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 ++++ +++ DQV ++ I + +G + I G SG + + + S Sbjct: 350 RELIGVID-RPVDQVLIESRIVIASDSFARDLGARFGIQGRRSGNNTAAIGGSLNQTGSI 408 Query: 241 --------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G + + F+ + L AL++ L+ P + Sbjct: 409 VNGGVGVPGGLNVNLPATAENAGALAYTLLGANFALDLELSALQQEGRGEVLSNPRVVTS 468 Query: 281 SGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + + A G + Y T++ +V + + L TPT+ S R+ + + Sbjct: 469 NQREAVIRQGREVGYVTLTGGGNQAFATPNVQFKEVVLELKVTPTITSDDRVFMAVNVLK 528 Query: 337 SEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 E + I + G +P R+ +T V + G T+V+ G+ + +P L +P L Sbjct: 529 DEVLQYIDTSIGQVPEIATREINTAVLVDDGQTVVIGGVYEFTDSNSVSKVPFLGDVPFL 588 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G LF+ +E+ E+ I TP +++ Sbjct: 589 GNLFKKKSRLKEKAELLIFLTPKVMR 614 >gi|315288713|gb|EFU48111.1| general secretion pathway protein D [Escherichia coli MS 110-3] Length = 681 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 607 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627 >gi|153003562|ref|YP_001377887.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. Fw109-5] gi|152027135|gb|ABS24903.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. Fw109-5] Length = 893 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 67/330 (20%), Positives = 124/330 (37%), Gaps = 41/330 (12%) Query: 128 RRFIADSNIRVEMVSDTVV----LHGMVRTIQDSQRAVELSETFLSQSGRN-QYANSSSK 182 + I ++V ++ + G V+ + + +V E ++ Q A ++ Sbjct: 556 KARIPLMPLKVRIIPVNFARAGDVSGRVKDVLSERGSVSTDERTNVLIVKDVQEALVRAE 615 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---------- 232 ++ L+ QV ++ I E + K +G Q S + + + Sbjct: 616 GLVRNLDTEIP-QVLIESRIVEASSNFNKALGVQWGGNASFTQATGNPTGVAFPNNVAAA 674 Query: 233 ---------------DFGGKFVSEGGD-------FSVKGVLDRFSFETVLHALERATAIR 270 ++ + GD F+ L ALE ++ Sbjct: 675 GGAGPGNSFGTAANPNYAVSLPAPVGDGQGGALGLVFGSAGGAFNLNLRLSALENNGVVK 734 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 T++ P + I + A+ G + VS+S + T + + L TP V + G I L Sbjct: 735 TISAPKIATIDNREATIGQGISIPFSQVSAS--GVNTTFIEAKLELKVTPHVSADGSILL 792 Query: 331 RIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 +I+ ++P A PS R+A+T V + G T V+ G+ +P L Sbjct: 793 KIKATNNQPNPQLTGANGQPSISKREAETEVLVKDGETTVIGGIYTRQTANRTSEVPFLG 852 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 K+P+LG FRN + TE+ I TP ++ Sbjct: 853 KLPLLGYFFRNMSEQDDHTELLIFITPRIL 882 >gi|323966493|gb|EGB61926.1| general secretion pathway protein D [Escherichia coli M863] gi|327251745|gb|EGE63431.1| general secretion pathway protein D [Escherichia coli STEC_7v] Length = 686 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|301326853|ref|ZP_07220153.1| general secretion pathway protein D [Escherichia coli MS 78-1] gi|300846528|gb|EFK74288.1| general secretion pathway protein D [Escherichia coli MS 78-1] Length = 686 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|11559475|dbj|BAB18788.1| GspD [Burkholderia cepacia] Length = 783 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 72/350 (20%), Positives = 122/350 (34%), Gaps = 58/350 (16%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G +A + + + + Y N + V++ L+ A QV ++ I E+ Sbjct: 367 SGDDNQPGGMIQADSATNSLIITASDPVYRN--LRSVIDQLD-ARRAQVYIEALIVELNS 423 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKF------VSEGGDFSVKGVLDRFSFETVLH 261 +G Q + + A G ++ GG + G + + L Sbjct: 424 TTQGNLGIQWQVASGQFLGGTNLAPTAGNGLGNSIINLTAGGLTNAAGGITGGGLASNLG 483 Query: 262 ALERA-------------------------TAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 L + + L+ P L + + A G Sbjct: 484 QLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIA 543 Query: 297 TVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347 T S S + T D G+ LH P + G + L++ TE S V G N+ Sbjct: 544 TGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVNGTTNSQT 603 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P++ R +T+ +G IVL GL++D+ Q +PLL IP +G LFR+ R + Sbjct: 604 GPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAK 663 Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 T + + P ++ S A+ NR + I G A Sbjct: 664 TNLMVFLRPVII---------------SDRSTAQEVTSNRYDYIQGVTGA 698 >gi|110643200|ref|YP_670930.1| type II secretion protein GspD [Escherichia coli 536] gi|194436907|ref|ZP_03069007.1| general secretion pathway protein GspD [Escherichia coli 101-1] gi|218550223|ref|YP_002384014.1| general secretion pathway protein D [Escherichia fergusonii ATCC 35469] gi|218555536|ref|YP_002388449.1| general secretion pathway protein D [Escherichia coli IAI1] gi|218696673|ref|YP_002404340.1| general secretion pathway protein D precursor [Escherichia coli 55989] gi|254162916|ref|YP_003046024.1| type II secretion protein GspD [Escherichia coli B str. REL606] gi|291284343|ref|YP_003501161.1| General secretion pathway protein D [Escherichia coli O55:H7 str. CB9615] gi|300931844|ref|ZP_07147141.1| general secretion pathway protein D [Escherichia coli MS 187-1] gi|300950837|ref|ZP_07164722.1| general secretion pathway protein D [Escherichia coli MS 116-1] gi|300958340|ref|ZP_07170482.1| general secretion pathway protein D [Escherichia coli MS 175-1] gi|110344792|gb|ABG71029.1| hypothetical type II secretion protein GspD [Escherichia coli 536] gi|194424389|gb|EDX40376.1| general secretion pathway protein GspD [Escherichia coli 101-1] gi|218353405|emb|CAU99456.1| general secretion pathway protein D precursor [Escherichia coli 55989] gi|218357764|emb|CAQ90408.1| general secretion pathway protein D precursor [Escherichia fergusonii ATCC 35469] gi|218362304|emb|CAQ99925.1| general secretion pathway protein D precursor [Escherichia coli IAI1] gi|242378520|emb|CAQ33305.1| pulD [Escherichia coli BL21(DE3)] gi|253974817|gb|ACT40488.1| GspD, hypothetical type II secretion protein [Escherichia coli B str. REL606] gi|253978972|gb|ACT44642.1| GspD, hypothetical type II secretion protein [Escherichia coli BL21(DE3)] gi|284922988|emb|CBG36080.1| type II secretion system protein D [Escherichia coli 042] gi|290764216|gb|ADD58177.1| General secretion pathway protein D [Escherichia coli O55:H7 str. CB9615] gi|300314983|gb|EFJ64767.1| general secretion pathway protein D [Escherichia coli MS 175-1] gi|300449873|gb|EFK13493.1| general secretion pathway protein D [Escherichia coli MS 116-1] gi|300460267|gb|EFK23760.1| general secretion pathway protein D [Escherichia coli MS 187-1] gi|320656346|gb|EFX24253.1| General secretion pathway protein D [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320666867|gb|EFX33843.1| General secretion pathway protein D [Escherichia coli O157:H7 str. LSU-61] gi|324114991|gb|EGC08956.1| general secretion pathway protein D [Escherichia fergusonii B253] gi|332344919|gb|AEE58253.1| general secretion pathway protein GspD [Escherichia coli UMNK88] Length = 686 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|320661717|gb|EFX29125.1| General secretion pathway protein D [Escherichia coli O55:H7 str. USDA 5905] Length = 686 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|254184073|ref|ZP_04890664.1| general secretion pathway protein D [Burkholderia pseudomallei 1655] gi|184214605|gb|EDU11648.1| general secretion pathway protein D [Burkholderia pseudomallei 1655] Length = 751 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 116/306 (37%), Gaps = 46/306 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFV 239 + V++ L+ A QV ++ + E+ +G Q + ++ +G + + GG + Sbjct: 394 RAVIDQLD-ARRAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLTTGGVGGGNSI 452 Query: 240 ---SEGGDFSVKGVLDRFS----------------FETVLHALERATAIRTLAEPTLTAI 280 + S G + S +L + L+ P L + Sbjct: 453 VDLTTRAATSAVGAISTISPGLNIGWLHNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTL 512 Query: 281 SGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + A G T S ++ + D G+ LH P + G + L++ Sbjct: 513 DNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQL 572 Query: 333 QTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 TE S V +N P++ R +TV +G IVL GL++D+ Q +PLL I Sbjct: 573 YTEDSSVVNTTINNQSGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVANNKVPLLGDI 632 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P +G LFR+ R++T + + P ++ + A+A NR + I Sbjct: 633 PWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTSNRYDYI 677 Query: 452 YGPKEA 457 G A Sbjct: 678 QGVTGA 683 >gi|21244259|ref|NP_643841.1| general secretion pathway protein D [Xanthomonas axonopodis pv. citri str. 306] gi|21109904|gb|AAM38377.1| general secretion pathway protein D [Xanthomonas axonopodis pv. citri str. 306] Length = 763 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 81/327 (24%), Positives = 129/327 (39%), Gaps = 44/327 (13%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + + +E+ D V + AV + T L +S + SS + V+ L++ Sbjct: 433 GNGAVTLEVAGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 479 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSI---------TGSSSGPSKSFAA--DFGGKFVS 240 QV ++ +AEV G S GP+ AA + G Sbjct: 480 -PMQVHIEAQVAEVNLTGALSYGVNWYFENAVTTPFNADGSGGPALPSAAGRNIWGDIAG 538 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 D V + ++ AL+ + +R L P++ + A+ G + + S Sbjct: 539 RVTDGGVAWTFLGKNAAAIISALDTVSNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSI 598 Query: 301 STG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------- 347 +TG +SV D GV+L P V G + L I E+S P A Sbjct: 599 NTGLGSDSSYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEISTPGARPAACTAATTTTV 658 Query: 348 -----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 R+ T + SG T++LAGL+ D G+P LSK+PI+GALF Sbjct: 659 NSAACNVDINTRRVKTEAAVQSGDTMMLAGLIDDSTTNGSVGVPFLSKLPIVGALFGRKT 718 Query: 403 FNREETEIFIAATPFLVK-PVAMRDLS 428 N + E+ + TP +V+ P RDL+ Sbjct: 719 QNTDRREVIVLITPSIVRNPKESRDLT 745 >gi|240949528|ref|ZP_04753868.1| type II secretory pathway, component HofQ [Actinobacillus minor NM305] gi|240296101|gb|EER46762.1| type II secretory pathway, component HofQ [Actinobacillus minor NM305] Length = 443 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 108/285 (37%), Gaps = 21/285 (7%) Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGE-----DQVTLKVTIAEVRRDILKQIGFQHS-- 218 + + + + N++++ E +Q+ ++ I + + L ++G + Sbjct: 150 IHFDERSNSLIIKDNPSSIKNMISLIKELDKPTEQIAIEARIVTISSENLHELGVRWGML 209 Query: 219 --------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--LDRFSFETVLHALERATA 268 + G+ G + F GG +V V ++ + L ALE+ + Sbjct: 210 SPNASHSRLGGTLEGNGVDSTKNLNVNFPVSGGASAVLQVASINSKVLDLELSALEQENS 269 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + +A P L + + AS G + Y + V + + L TP + +I Sbjct: 270 VEIIASPRLLTTNKKLASIKQGTEIPYAIYDRKSETYDVEFKEAVLGLQVTPHISKDNQI 329 Query: 329 GLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + + + V + S ++ +T V G TIVL G+ + + + Sbjct: 330 LMDLVVTQNSQGQSVVSSTSDNAAVSIDKQELNTQVFAKHGETIVLGGIFQHLKTKDSDR 389 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 +P+L IP L LF + + E+ I TP++++ + + Sbjct: 390 VPVLGSIPFLKHLFSYQKDQISKRELVIFVTPYIIQANDINAQPQ 434 >gi|299529584|ref|ZP_07043021.1| general secretion pathway protein D [Comamonas testosteroni S44] gi|298722447|gb|EFI63367.1| general secretion pathway protein D [Comamonas testosteroni S44] Length = 750 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 65/294 (22%), Positives = 112/294 (38%), Gaps = 43/294 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------------ITG 221 + V++ L+ QV ++ I EV D Q+G Q S Sbjct: 377 RTVIDKLD-GRRAQVLIEALIVEVSADKAAQLGVQWSSVIRNNGRVLGVLGNGTSISGIS 435 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKG-----------VLDRFSFETVLHALERATAIR 270 + G S + G +++ ++ G V S +++ ++ Sbjct: 436 NIFGLSGAVGNLVNGTPLTDSQASAIGGMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTN 495 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPT 321 L+ P L + + AS G + T S + A T+ D G +L P Sbjct: 496 ILSTPNLMTLDNEEASIMVGENVPFPTGSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQ 555 Query: 322 VLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + G I + + E S G NA + R ++ V + G +VL GL+ D+ Q Sbjct: 556 INENGTIKMAVYQENSAVKQGTANAQSGATTTKRSIESNVLVEDGAIVVLGGLIADEYSQ 615 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 +E +PLL IP+LG LFRN+ R++T + + P +++ D Y Sbjct: 616 SQERVPLLGDIPLLGNLFRNTSRERKKTNLMVFLRPTVLRDANSTS-QLSQDRY 668 >gi|167717371|ref|ZP_02400607.1| general secretion pathway protein D [Burkholderia pseudomallei DM98] Length = 730 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 116/306 (37%), Gaps = 46/306 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFV 239 + V++ L+ A QV ++ + E+ +G Q + ++ +G + + GG + Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLTTGGVGGGNSI 445 Query: 240 ---SEGGDFSVKGVLDRFS----------------FETVLHALERATAIRTLAEPTLTAI 280 + S G + S +L + L+ P L + Sbjct: 446 VDLTTRAATSAVGAISTISPGLNIGWLHNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTL 505 Query: 281 SGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + A G T S ++ + D G+ LH P + G + L++ Sbjct: 506 DNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQL 565 Query: 333 QTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 TE S V +N P++ R +TV +G IVL GL++D+ Q +PLL I Sbjct: 566 YTEDSSVVNTTINNQSGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVANNKVPLLGDI 625 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P +G LFR+ R++T + + P ++ + A+A NR + I Sbjct: 626 PWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTSNRYDYI 670 Query: 452 YGPKEA 457 G A Sbjct: 671 QGVTGA 676 >gi|221069059|ref|ZP_03545164.1| type IV pilus secretin PilQ [Comamonas testosteroni KF-1] gi|220714082|gb|EED69450.1| type IV pilus secretin PilQ [Comamonas testosteroni KF-1] Length = 703 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 99/249 (39%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQH-------------------SITGSSS----GPSKSF 230 QV ++ I E R + +G + S +GSSS G + Sbjct: 450 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSGSGSSSKFPSGNFVNL 509 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A G FSV L ALE + ++ P L A G Sbjct: 510 PASVAGVNTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 569 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 ++ Y +V++ GAT+++ + L TP + G I L + +V++ G + Sbjct: 570 TEYPY-SVTAPNGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 626 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PL +P+LG LFR++ + E+ Sbjct: 627 IDTKHIKTQVLVENGGTVVIGGIFEMEETNQLNKVPLFGDLPVLGHLFRSNTKASTKREM 686 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 687 LVFITPKML 695 >gi|222034685|emb|CAP77427.1| hypothetical type II secretion proteinGspD [Escherichia coli LF82] Length = 679 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 368 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 427 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625 >gi|157157281|ref|YP_001464424.1| general secretion pathway protein D [Escherichia coli E24377A] gi|188495193|ref|ZP_03002463.1| general secretion pathway protein D [Escherichia coli 53638] gi|191169103|ref|ZP_03030864.1| general secretion pathway protein GspD [Escherichia coli B7A] gi|193062082|ref|ZP_03043178.1| general secretion pathway protein GspD [Escherichia coli E22] gi|260869724|ref|YP_003236126.1| putative type II secretion protein GspD [Escherichia coli O111:H- str. 11128] gi|300824048|ref|ZP_07104169.1| general secretion pathway protein D [Escherichia coli MS 119-7] gi|300905916|ref|ZP_07123648.1| general secretion pathway protein D [Escherichia coli MS 84-1] gi|301304138|ref|ZP_07210254.1| general secretion pathway protein D [Escherichia coli MS 124-1] gi|307310403|ref|ZP_07590051.1| general secretion pathway protein D [Escherichia coli W] gi|309794068|ref|ZP_07688493.1| general secretion pathway protein D [Escherichia coli MS 145-7] gi|331669777|ref|ZP_08370622.1| general secretion pathway protein D [Escherichia coli TA271] gi|331679035|ref|ZP_08379707.1| general secretion pathway protein D [Escherichia coli H591] gi|157079311|gb|ABV19019.1| general secretion pathway protein D [Escherichia coli E24377A] gi|188490392|gb|EDU65495.1| general secretion pathway protein D [Escherichia coli 53638] gi|190900855|gb|EDV60643.1| general secretion pathway protein GspD [Escherichia coli B7A] gi|192932302|gb|EDV84900.1| general secretion pathway protein GspD [Escherichia coli E22] gi|257766080|dbj|BAI37575.1| predicted type II secretion protein GspD [Escherichia coli O111:H- str. 11128] gi|300402269|gb|EFJ85807.1| general secretion pathway protein D [Escherichia coli MS 84-1] gi|300523438|gb|EFK44507.1| general secretion pathway protein D [Escherichia coli MS 119-7] gi|300840551|gb|EFK68311.1| general secretion pathway protein D [Escherichia coli MS 124-1] gi|306909298|gb|EFN39793.1| general secretion pathway protein D [Escherichia coli W] gi|308122475|gb|EFO59737.1| general secretion pathway protein D [Escherichia coli MS 145-7] gi|309703398|emb|CBJ02737.1| type II secretion system protein D [Escherichia coli ETEC H10407] gi|315062282|gb|ADT76609.1| type II secretion system lipoprotein D [Escherichia coli W] gi|315253339|gb|EFU33307.1| general secretion pathway protein D [Escherichia coli MS 85-1] gi|323178670|gb|EFZ64246.1| general secretion pathway protein D [Escherichia coli 1180] gi|323377134|gb|ADX49402.1| general secretion pathway protein D [Escherichia coli KO11] gi|331062690|gb|EGI34604.1| general secretion pathway protein D [Escherichia coli TA271] gi|331073100|gb|EGI44423.1| general secretion pathway protein D [Escherichia coli H591] Length = 686 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|121593158|ref|YP_985054.1| type IV pilus secretin PilQ [Acidovorax sp. JS42] gi|120605238|gb|ABM40978.1| type IV pilus secretin PilQ [Acidovorax sp. JS42] Length = 696 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 101/258 (39%), Gaps = 24/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------- 225 ++++ L++ QV ++ I E R + +G + + G Sbjct: 436 RQLLATLDVP-VRQVMIEARIVEARDTFGRSLGVRLGGGSRTGGSAVGGTYDNVAGPTGG 494 Query: 226 ----PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 P S A G S+ L A+E + ++ P L Sbjct: 495 SGMSPFVSLPASLSGVSTVGSFALSIFNSNASRFLSLELSAMEADGQGKIVSSPRLITAD 554 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A G ++ Y +V++ GAT++ + L TP + G I L + +V++ Sbjct: 555 QTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVTPQITPEGNIILDL--DVNKDSR 611 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G + + T V + +GGT+V+ G+ + + + IP+L +P++G LF+N Sbjct: 612 GETTTQGVAIDTKHVKTQVLIENGGTVVIGGIFEMEETNQENKIPVLGDVPVVGNLFKNR 671 Query: 402 RFNREETEIFIAATPFLV 419 + E+ + TP ++ Sbjct: 672 TKESTKREMLVFITPKVI 689 >gi|300993062|ref|ZP_07180170.1| general secretion pathway protein D [Escherichia coli MS 200-1] gi|301048227|ref|ZP_07195262.1| general secretion pathway protein D [Escherichia coli MS 185-1] gi|300299921|gb|EFJ56306.1| general secretion pathway protein D [Escherichia coli MS 185-1] gi|300305186|gb|EFJ59706.1| general secretion pathway protein D [Escherichia coli MS 200-1] gi|324005480|gb|EGB74699.1| general secretion pathway protein D [Escherichia coli MS 57-2] gi|324011870|gb|EGB81089.1| general secretion pathway protein D [Escherichia coli MS 60-1] Length = 681 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627 >gi|315297663|gb|EFU56940.1| general secretion pathway protein D [Escherichia coli MS 16-3] Length = 681 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627 >gi|241763436|ref|ZP_04761490.1| general secretion pathway protein D [Acidovorax delafieldii 2AN] gi|241367378|gb|EER61699.1| general secretion pathway protein D [Acidovorax delafieldii 2AN] Length = 697 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 118/286 (41%), Gaps = 10/286 (3%) Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 + V G+V R + + + + + L++ QV ++ + Sbjct: 370 NQGVATGGVVAANLGGVRVMADEQNNSILVWSTRSDFQKIENTLKRLDLP-PTQVLIEAS 428 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 I EV + G Q + + + G S G + G FS + L+ Sbjct: 429 IIEVTLGDDLKYGLQWAFSDTHRGGPGS--GLIGALPSASTGGFSYTLKDTLGNMRVTLN 486 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGV 314 AL + I+ ++ P+L + Q+A+ G Q +T ++ T+ D GV Sbjct: 487 ALAAKSLIKVISSPSLMVLDNQTATIAVGTQQPIRTGETTNLNTVGNSTTTTYQYKDTGV 546 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L P+V S + + I V++ ++ R+ + V + SG +VL GL+ Sbjct: 547 QLSVQPSVNSGDLVTMDISQAVTDVGDEDTVTGQRAFLQRQISSKVAVRSGEAVVLGGLI 606 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 KD+ + G+PLLS +P++G LF + + TE+ + TP +V+ Sbjct: 607 KDNSSSGRSGVPLLSSLPVVGGLFGATTSSSGRTELLVVITPKVVR 652 >gi|209920436|ref|YP_002294520.1| putative type II secretion protein [Escherichia coli SE11] gi|256019113|ref|ZP_05432978.1| putative type II secretion protein [Shigella sp. D9] gi|332280218|ref|ZP_08392631.1| general secretion pathway protein D [Shigella sp. D9] gi|209913695|dbj|BAG78769.1| putative type II secretion protein [Escherichia coli SE11] gi|320201874|gb|EFW76449.1| General secretion pathway protein D [Escherichia coli EC4100B] gi|332102570|gb|EGJ05916.1| general secretion pathway protein D [Shigella sp. D9] Length = 686 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|167045577|gb|ABZ10227.1| putative bacterial type II and III secretion system protein [uncultured marine crenarchaeote HF4000_APKG10I20] Length = 648 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 69/336 (20%), Positives = 136/336 (40%), Gaps = 46/336 (13%) Query: 104 HDGKQMLNLDILIER-DIAHLEM---TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 D + ++ + + DI L L+ D+ I ++ ++T++L+ Sbjct: 338 RDSEDLVTEVVRVNHADITELSTSLNALKSARKDALITIDTRTNTLILN------DLRHH 391 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ ET + +L+I+ QV ++ I E+ + +++G + Sbjct: 392 VDDMLET------------------IKILDISTP-QVLIEAKIVEISKTFSQELGISWGL 432 Query: 220 TGSSSG-PSKSFAADFGGKFVS-------------EGGDFSVKGVL-DRFSFETVLHALE 264 G P+ + + F +F+ G D ++G L + L ALE Sbjct: 433 VNPEPGFPTVTGNSTFDTQFLVDLRPTVDIATGNVAGFDSLIQGFLPGNIALNVRLEALE 492 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 ++ R ++ P +T + A SG Y+ +S S+ + + L TP V S Sbjct: 493 KSGKGRVISSPRVTTADNKEARVLSGRDIPYQV--NSVEGNSIQFVNAELSLTVTPHVTS 550 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 I + I + A +P+ ++ T V + +G T VLAG+ + + K+ Sbjct: 551 DNSIYMTIDATKNAADFAQLAAGIPTITRKEMHTEVLVGNGETTVLAGIYESTSTENKKA 610 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P SK+P++G LFR E+ + TP +V+ Sbjct: 611 VPWFSKLPLVGFLFRAFDDKDTINELLVFITPTIVE 646 >gi|148269971|ref|YP_001244431.1| type II and III secretion system protein [Thermotoga petrophila RKU-1] gi|147735515|gb|ABQ46855.1| type II and III secretion system protein [Thermotoga petrophila RKU-1] Length = 1282 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 66/345 (19%), Positives = 138/345 (40%), Gaps = 35/345 (10%) Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL-IERDIAHLEMTLRRFIADSNIR 137 V + S YLF G V ++ + + + + + ++ + + + Sbjct: 971 VDLISQNYGYLFDNKSG---VYVLSKPKQDLARRYVYDVPHNFDQIKALIEFY--GGTVY 1025 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V+ +++ +V+ G+ TI ++ L + Q+ Sbjct: 1026 VDSLNNFMVVTGISETI-----------------------KKELDNIIEKLKKPTK-QIE 1061 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSF 256 + I V R ++ ++ + + + + + V++ DF + G + + Sbjct: 1062 ISAKI--VDRSLIDRLSKEAGLELTGGNVNVGSSGAGISFSVTDYLDFEKIFGGILNSNL 1119 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316 + T LA P + SG+ A G + Y T ++ G V + G+ L Sbjct: 1120 SLQFSDQKTNTLDDILASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIEL 1179 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 + TP V S I L + + SEP +N ++P R R+ T + + +G TI + GL+++ Sbjct: 1180 NITPFVRSDDTIELDLFVKASEPGNYIN--EVPGERTRETQTHLIVKNGSTITIGGLIRE 1237 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +P L +P++G FR N+E+ ++ I T +V+P Sbjct: 1238 VTNVTESKLPFLGDLPVIGQFFRTKSENKEKRDLIIFLTVRVVEP 1282 >gi|326423839|ref|NP_760349.2| pilus (MSHA type) biogenesis protein MshL [Vibrio vulnificus CMCP6] gi|319999208|gb|AAO09876.2| pilus (MSHA type) biogenesis protein MshL [Vibrio vulnificus CMCP6] Length = 548 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 110/280 (39%), Gaps = 29/280 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + + + QV L+ I EV Q G S +S G S S + G V Sbjct: 259 RQFLGISQERMQRQVILEAKILEVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLP 318 Query: 242 GGD-------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G D + SFE VL + + L+ P +TA + Q A G Sbjct: 319 GLDAIGSLLGGQTNVTISDGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQY 378 Query: 295 YKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341 Y T SS ++T G+ L TP + G + L + EV E Sbjct: 379 YVTALSSNVGNDDKSKAVPEVTLTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETK 438 Query: 342 GVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 +N G + +R++D+ + G +V+ GL+K + + +P L IP Sbjct: 439 QLNLGGDFQNVTLPLAKSSIRESDSVIRARDGDVVVIGGLMKSNTIERVSKVPFLGDIPA 498 Query: 394 LGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 LG LFRN+ ++TE+ I P +V ++L R D Sbjct: 499 LGHLFRNTSNLTQKTELVILLKPTVVGVNTWQKELERSRD 538 >gi|167582884|ref|ZP_02375758.1| general secretion pathway protein D [Burkholderia thailandensis TXDOH] Length = 744 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 114/306 (37%), Gaps = 46/306 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 + V++ L+ A QV ++ + E+ +G Q + ++ + Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLPTGGVGGGNSI 445 Query: 231 -------AADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAI 280 A G + ++ + + F +L + L+ P L + Sbjct: 446 VDLTTRAATSAVGAISTLTPGLNIGWLHNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTL 505 Query: 281 SGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + A G T S ++ + D G+ LH P + G + L++ Sbjct: 506 DNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQL 565 Query: 333 QTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 TE S V VN P++ R +TV +G IVL GL++D+ Q +PLL I Sbjct: 566 YTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDI 625 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P +G LFR+ R++T + + P ++ D + A+A NR + I Sbjct: 626 PWIGQLFRSEGKTRQKTNLMVFLRPVII-----------TDR----ETAQAVTSNRYDYI 670 Query: 452 YGPKEA 457 G A Sbjct: 671 QGVTGA 676 >gi|193067486|ref|ZP_03048454.1| general secretion pathway protein GspD [Escherichia coli E110019] gi|192959443|gb|EDV89878.1| general secretion pathway protein GspD [Escherichia coli E110019] Length = 686 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|157162438|ref|YP_001459756.1| general secretion pathway protein D [Escherichia coli HS] gi|157068118|gb|ABV07373.1| general secretion pathway protein D [Escherichia coli HS] Length = 686 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|317407154|gb|EFV87149.1| general secretion pathway protein D [Achromobacter xylosoxidans C54] Length = 870 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 71/317 (22%), Positives = 119/317 (37%), Gaps = 37/317 (11%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGG 236 S ++V++ L+ QV ++ I EV + G Q + +S G S + GG Sbjct: 413 SLREVIDQLDQR-RAQVLVESLIVEVSEQAAAEFGIQWMTGAGNINSGGTSFIGGTNLGG 471 Query: 237 KFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTA 279 ++ G S+ + + + A++ L+ P L Sbjct: 472 SGLTGTGPTSIDALGSGLSLGVVKGTVDVLGNKVINLGVLARAMQNTGEANILSTPNLLT 531 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + QSAS G + T T ++ D G+ L+ P + G + L I Sbjct: 532 LDNQSASILVGKTVPFVTGQYVTNGGNNNNPFQTIQREDVGLKLNIRPQISEGGAVKLDI 591 Query: 333 QTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS +A R DT+V + G IVL GLL+D++ +P LS I Sbjct: 592 YQEVSSIDESRSSATTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLTSNNVPGLSSI 651 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA-------FF 444 P+LG+LF+ R +T + + P++V+ A + S D Y A+ + Sbjct: 652 PVLGSLFKYDSRKRTKTNLMVFLRPYVVRD-ARQSASVTMDRYDYMRRAQGGAQPGNHWL 710 Query: 445 FNRVNKIYGPKEASEVE 461 + P S Sbjct: 711 LPNMQAPMLPPPGSAPS 727 >gi|116751076|ref|YP_847763.1| general secretion pathway protein D [Syntrophobacter fumaroxidans MPOB] gi|116700140|gb|ABK19328.1| general secretion pathway protein D [Syntrophobacter fumaroxidans MPOB] Length = 793 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 121/289 (41%), Gaps = 24/289 (8%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + + E++ + ++ YA KK + L+I V ++V IAEV + Sbjct: 483 SPEVMIIPDEVNNAIVVRANATDYAK--IKKTIEALDIL-PRAVLIEVIIAEVALTKDFE 539 Query: 213 IGFQHSITGSSSGPSKSFAA--DFGG--------KFVSEGGDFSVKGVLDRFSFETVLHA 262 G + + + G + GG +S G ++ V + VL Sbjct: 540 YGLKWYFSHAEVGAGVGQGSLNGLGGVSDIALNLAGISSAGGMALAWVSNAKDMAGVLSW 599 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--------VTTHDYGV 314 L T ++ L+ PTL A + A+ GG+ + S + G ++ + + G Sbjct: 600 LSSKTKVKILSTPTLLATDNKEAAIQVGGRTPVPSGSYTGGTSTTLDTVFSTIEYEETGT 659 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLA 371 +L TP + + G + L ++ + G P++ R TT+ G T+V+ Sbjct: 660 ILTVTPHINAGGLVRLEVEQTIRRVGANATVGVNNTAPTFTERNLKTTLLAQDGSTVVIG 719 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G++ + + G P+L +PI+G LF +RE TE+ IA TP +V+ Sbjct: 720 GIIDEIDRDTTTGAPMLVDVPIIGPLFGQKGKSRERTELLIAITPRVVE 768 >gi|83720377|ref|YP_440567.1| general secretion pathway protein D [Burkholderia thailandensis E264] gi|167621024|ref|ZP_02389655.1| general secretion pathway protein D [Burkholderia thailandensis Bt4] gi|83654202|gb|ABC38265.1| general secretion pathway protein D [Burkholderia thailandensis E264] Length = 744 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 114/306 (37%), Gaps = 46/306 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 + V++ L+ A QV ++ + E+ +G Q + ++ + Sbjct: 387 RAVIDQLD-ARRAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLPTGGVGGGNSI 445 Query: 231 -------AADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAI 280 A G + ++ + + F +L + L+ P L + Sbjct: 446 VDLTTRAATSAVGAISTLTPGLNIGWLHNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTL 505 Query: 281 SGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + A G T S ++ + D G+ LH P + G + L++ Sbjct: 506 DNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQL 565 Query: 333 QTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 TE S V VN P++ R +TV +G IVL GL++D+ Q +PLL I Sbjct: 566 YTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDI 625 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P +G LFR+ R++T + + P ++ D + A+A NR + I Sbjct: 626 PWIGQLFRSEGKTRQKTNLMVFLRPVII-----------TDR----ETAQAVTSNRYDYI 670 Query: 452 YGPKEA 457 G A Sbjct: 671 QGVTGA 676 >gi|325924171|ref|ZP_08185732.1| General secretion pathway protein D [Xanthomonas gardneri ATCC 19865] gi|325545346|gb|EGD16639.1| General secretion pathway protein D [Xanthomonas gardneri ATCC 19865] Length = 758 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 81/326 (24%), Positives = 137/326 (42%), Gaps = 44/326 (13%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 ++++ +E+ D V + AV + T L ++ + SS + V+ L++ Sbjct: 431 NASVTLEVEGDKVGVS-----------AVAETNTLLVRASAQAW--SSIRDVIEKLDVM- 476 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GD 244 QV ++ IAEV + G + + P + + G + G G Sbjct: 477 PMQVHIEAQIAEVTLTGQLEYGVNWYFENAVNAPINADGSGGAGLAPAVGRGIWGDVSGS 536 Query: 245 FSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + G+ F + ++ AL+R T +R L P++ + A+ G + + S + Sbjct: 537 VTNNGLAWTFLGKNAAAIISALDRVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSIN 596 Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------- 347 TG +SV D GV+L P V G + L I EVS P A Sbjct: 597 TGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTTVN 656 Query: 348 ----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 R+ T + +G TI+LAGL+ D +G+P LSK+P++G+LF Sbjct: 657 SAACNVDINTRRVKTEAAVQNGDTIMLAGLIDDTTSDGSDGLPFLSKLPVVGSLFGRKTQ 716 Query: 404 NREETEIFIAATPFLVK-PVAMRDLS 428 NR E+ + TP +V+ P RDL+ Sbjct: 717 NRNRREVIVLITPSIVRNPQDARDLT 742 >gi|167584994|ref|ZP_02377382.1| general secretion pathway protein D [Burkholderia ubonensis Bu] Length = 777 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 64/346 (18%), Positives = 122/346 (35%), Gaps = 55/346 (15%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G +A + + + + Y N + V++ L+ A QV ++ + E++ Sbjct: 359 GEENQPGGMIQADAATNSLIITAPDPVYRN--LRAVIDQLD-ARRAQVYIEALVVELQAT 415 Query: 209 ILKQIGFQHSITGSSSGPSKSF-------AADFGGKFVSEGGDFS--------------- 246 +G Q + ++ + A G + G + Sbjct: 416 TSGNLGIQWQVANNALFAGTNLPSGASISGAGLGNSIIDLTGRAATSPLTAVSALTPGLN 475 Query: 247 ---VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 ++ + +L ++ L+ P L + + A G T S S Sbjct: 476 IGWLRNMFGVQGLGALLQYFAGSSDANVLSTPNLITLDNEEAKIVVGQNVPIPTGSYSNL 535 Query: 304 A--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSY 351 + D G+ LH P + G + +++ TE S V + P++ Sbjct: 536 TSGTGGNAFNTYDRRDVGLTLHVKPQITDGGILKMQLYTEDSSVVQSTVSTSANSPGPTF 595 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R +TV +G IVL GL++D+ +PLL IP +G LFR+ +R++T + Sbjct: 596 NKRSIQSTVLADNGEIIVLGGLMQDNYNTSNSKVPLLGDIPWIGQLFRSESKSRQKTNLM 655 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 + P ++ + A+A NR + I G A Sbjct: 656 VFLRPVIIND---------------RETAQAVTANRYDYIQGVTGA 686 >gi|260222239|emb|CBA31603.1| hypothetical protein Csp_D27950 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 711 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 121/313 (38%), Gaps = 47/313 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228 + V++ L+ A QV ++ IAEV D + G Q ++G S Sbjct: 386 RAVIDKLD-ARRAQVFVESLIAEVSADKAAEFGIQWQGALGNAGDSAIGVLGTNFGSAGS 444 Query: 229 ---SFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAIS 281 S AA VS ++ GV +R + + LE + L+ P L + Sbjct: 445 NIISLAAAGASGTVSPAKGLNI-GVANRTNGVYVLGFLARFLESTGSGNVLSTPNLLTLD 503 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + A G + T + + ++ D G+ L P + G I L I Sbjct: 504 NEEAKIVIGQNVPFVTGQFTNTGSNGGSVNPFQTIERKDVGLTLKVKPQISENGTIKLAI 563 Query: 333 QTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS + A + P+ R ++ V + G +VL GLL+D+ +E +P L+ + Sbjct: 564 YQEVSSVLASTAGAANGPTTNKRTIESNVLVEDGAVVVLGGLLQDEYAGNQEKVPGLADV 623 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P G LF++ +R++T + + P +V+ +A R ++ Sbjct: 624 PWFGNLFKSESRSRKKTNLMVFLRPVVVRD---------------ATATQALSNERYEQM 668 Query: 452 YGPKEASEVEGQN 464 ++ ++ E N Sbjct: 669 RSSQQGAQPEPSN 681 >gi|152991308|ref|YP_001357030.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2] gi|151423169|dbj|BAF70673.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2] Length = 495 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 59/316 (18%), Positives = 120/316 (37%), Gaps = 40/316 (12%) Query: 121 AHLEMTLRRFI--ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 L+ L+ F+ S++ + + V + G + +R ++ Sbjct: 188 DSLKQQLQTFLHDPHSDVFLNKDASIVTVTGTKEELDKVERFLQ---------------- 231 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 L QV ++ I EV+ + + +G S S+S G Sbjct: 232 --------KLQDRMHKQVMIEAKIIEVQYNDDQTVGIDWSKFSLDVTGSRSAQQSRSGST 283 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYK 296 + FS + +L L++ ++ L+ P + ++ Q A G Q + Y+ Sbjct: 284 KLNNFGTPDYFIGYNFSMQGLLDFLKKYGKVKILSNPKVMTLNNQPAIINVGDQLSYRYE 343 Query: 297 TVSSSTGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVN 344 TG +V Y G+ L+ P + I ++I S N Sbjct: 344 NGVVITGGNAVANQTYSIGQTFVGISLYVIPEITENSDIIMKINPVTSALKNENIGYETN 403 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P R+++ + V++ G I++ GL+ + + +P+L IPI+G F++ + Sbjct: 404 RTLPPDIRLKQVTSIVKVKDGQKILIGGLISKNYSKQFNKVPVLGDIPIIGYAFKSKNNS 463 Query: 405 REETEIFIAATPFLVK 420 +++E+F+ P +VK Sbjct: 464 VKKSELFVLIIPKIVK 479 >gi|325914232|ref|ZP_08176582.1| General secretion pathway protein D [Xanthomonas vesicatoria ATCC 35937] gi|325539487|gb|EGD11133.1| General secretion pathway protein D [Xanthomonas vesicatoria ATCC 35937] Length = 778 Score = 180 bits (456), Expect = 6e-43, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 128/326 (39%), Gaps = 41/326 (12%) Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + + V + AV + T L +S + +S + V+ L++ QV ++ Sbjct: 437 SNGNGAVTLEVEGDKVGVSAVAETNTLLVRSTPQSW--NSIRDVIEKLDVM-PMQVHIEA 493 Query: 201 TIAEVRRDILKQIGFQHSI------------TGSSSGPSKSFAADFG--------GKFVS 240 IAEV + G G ++G A G Sbjct: 494 QIAEVNLTGELRYGVNWYFENAVNAPGAATDNGVTNGTGIGLGAGLANAAGRNIWGDIAG 553 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + G + + ++ AL+ T +R L P++ + A+ G + + S Sbjct: 554 KVGSGGLAWSFLGKNAAAIISALDTVTNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSI 613 Query: 301 STG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIGV 343 +TG +SV D GV+L P V G + L I EVS P Sbjct: 614 NTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSPGDRPTACASATATVN 673 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 A R+ T + SG TI+LAGL++D G+P LSK+P+LG+LF Sbjct: 674 QAACNVDINTRRIKTEAAIQSGDTIMLAGLIQDSTSDGSAGVPFLSKLPVLGSLFGQKTQ 733 Query: 404 NREETEIFIAATPFLVK-PVAMRDLS 428 N+ +E+ + TP +V+ P+ R+L+ Sbjct: 734 NKRRSEVIVLLTPSIVRNPMEARNLT 759 >gi|218706590|ref|YP_002414109.1| general secretion pathway protein D [Escherichia coli UMN026] gi|300900296|ref|ZP_07118475.1| general secretion pathway protein D [Escherichia coli MS 198-1] gi|331648754|ref|ZP_08349842.1| general secretion pathway protein D [Escherichia coli M605] gi|331664576|ref|ZP_08365482.1| general secretion pathway protein D [Escherichia coli TA143] gi|218433687|emb|CAR14602.1| general secretion pathway protein D precursor [Escherichia coli UMN026] gi|300356186|gb|EFJ72056.1| general secretion pathway protein D [Escherichia coli MS 198-1] gi|331042501|gb|EGI14643.1| general secretion pathway protein D [Escherichia coli M605] gi|331058507|gb|EGI30488.1| general secretion pathway protein D [Escherichia coli TA143] Length = 686 Score = 180 bits (456), Expect = 6e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|281180003|dbj|BAI56333.1| putative type II secretion protein [Escherichia coli SE15] Length = 659 Score = 180 bits (456), Expect = 6e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 289 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 347 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 348 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 407 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 408 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 467 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 468 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 527 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 528 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 585 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 586 KRNLMVFIRPTILRDGMAAD 605 >gi|332308478|ref|YP_004436329.1| pilus (MSHA type) biogenesis protein MshL [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175807|gb|AEE25061.1| pilus (MSHA type) biogenesis protein MshL [Glaciecola agarilytica 4H-3-7+YE-5] Length = 552 Score = 180 bits (456), Expect = 6e-43, Method: Composition-based stats. Identities = 65/257 (25%), Positives = 107/257 (41%), Gaps = 23/257 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGKFVSEGGDFSVKG 249 + QV L+ I EV Q G S ++SG + S + G +S Sbjct: 280 QRQVILEARILEVSLSDGYQQGINWSEILANSGSTDFQFSTTSGSLGDAISATLGGVTSL 339 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------- 301 F VL+ L+ ++ L+ P +TAI+ Q A G + T SS Sbjct: 340 SFVNKDFSGVLNLLQTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSESTVTAAT 399 Query: 302 ---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVN----AGDMP 349 T +T G+ L TP + + G + L + V E V+ +N + Sbjct: 400 ASTTPNIELTPFFSGIALDVTPQIDAQGGVLLHVHPSVIETEEQEKVVTLNEEQFVLPLA 459 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + +R++DT + SG +V+ GL++ I + + PLL IP+LG LF+N + + + E Sbjct: 460 ASNIRESDTIIHARSGEIVVIGGLMQSIISETESKTPLLGDIPLLGNLFKNRQESEIKKE 519 Query: 410 IFIAATPFLVKPVAMRD 426 + I P +V R Sbjct: 520 LVILLRPTVVSADTWRQ 536 >gi|323183550|gb|EFZ68947.1| general secretion pathway protein D [Escherichia coli 1357] Length = 686 Score = 180 bits (456), Expect = 6e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|54306408|gb|AAV33391.1| type IV pilus biogenesis secretin PilQ [Moraxella catarrhalis 7169] gi|326559645|gb|EGE10059.1| type IV pilus secretin PilQ [Moraxella catarrhalis 7169] gi|326567677|gb|EGE17783.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC1] gi|326568688|gb|EGE18759.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC7] Length = 473 Score = 180 bits (456), Expect = 6e-43, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 29/299 (9%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 T + G + + + + + + T + Q AN K ++ ++I +QV ++ I Sbjct: 182 TTAVRGTLLSERGTVTVDKRTNTLIIQDVPASVAN--IKALIERIDIP-VEQVMIEARIV 238 Query: 204 EVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGG--------DFSVKGVL 251 + +++G G + G S+ + V+ GG D V + Sbjct: 239 SANENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMWQEGVAAGGHQNSHLNVDLGVDNAM 298 Query: 252 DRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 R +F + L A++ ++ P + Q+A +SG Q Y+ + S Sbjct: 299 GRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHS 358 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 GA++ + ++L TP + G+IGL++ + PV + + + +T V Sbjct: 359 -GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL---GHIAIQEDAIETNVI 414 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+ Sbjct: 415 IEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473 >gi|323494567|ref|ZP_08099671.1| general secretion pathway protein D [Vibrio brasiliensis LMG 20546] gi|323311170|gb|EGA64330.1| general secretion pathway protein D [Vibrio brasiliensis LMG 20546] Length = 674 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 55/292 (18%), Positives = 107/292 (36%), Gaps = 46/292 (15%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------------- 217 ++ + V++ L+I QV ++ I E+ +G Q Sbjct: 329 NALQDVISQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAVIQYGNTGVPIGQV 387 Query: 218 ------------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 S + D+ + G + + + Sbjct: 388 MVGLEEAKDTTTTESYWNSTDNKWESRQTTEQGDYSTLASALSGAQGAALSVVMGDWTAL 447 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGV 314 + A+ + L+ P++T + ASF G + T S++ +V + G+ Sbjct: 448 ISAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGI 507 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 L P + + L I+ EVS V+G N + R+ +T+V + G IVL GL+ Sbjct: 508 KLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMVEDGAMIVLGGLI 566 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + + +PLL IP LG LF+++ E+ + + P +++ D Sbjct: 567 DERALESESKVPLLGDIPYLGHLFKSTSTQVEKKNLMVFIKPTIIRDGMTAD 618 >gi|293412339|ref|ZP_06655062.1| general secretion pathway protein D [Escherichia coli B354] gi|293449309|ref|ZP_06663730.1| general secretion pathway protein D [Escherichia coli B088] gi|291322399|gb|EFE61828.1| general secretion pathway protein D [Escherichia coli B088] gi|291469110|gb|EFF11601.1| general secretion pathway protein D [Escherichia coli B354] Length = 679 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 368 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 427 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625 >gi|152986624|ref|YP_001348780.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] gi|150961782|gb|ABR83807.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] Length = 758 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 115/263 (43%), Gaps = 23/263 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------- 234 ++++ L++ Q+ ++ I E+ ++ + +G Q ++ G + SFA Sbjct: 329 EEIVRQLDVP-RAQLLVEAAIVELTGELNEALGVQWAMRGGHAVGGTSFAGSGLSIGTLL 387 Query: 235 ----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 GK +E D ++ G+ R F ++ AL R + L+ P+L + Q A G Sbjct: 388 GALQSGKPPAELPDGAIVGLGSR-DFGALITALTRNSNSNLLSTPSLLTLDNQKAEILVG 446 Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 ++T S +T + T+V D GV L TP + + L I+ E+S Sbjct: 447 QNVPFQTGSYTTNSEGSSNPFTTVERKDIGVTLKVTPHIGDDRMLRLEIEQEISSIAPAA 506 Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 R +TV G IVL GL++DD+ + +PLL IP +G LFR+ Sbjct: 507 TLAAKTVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDVVRSDSRVPLLGDIPGVGRLFRS 566 Query: 401 SRFNREETEIFIAATPFLVKPVA 423 +R R + + + P +V+ Sbjct: 567 TRDTRVKRNLMVFLRPSIVRDAV 589 >gi|300973519|ref|ZP_07172233.1| general secretion pathway protein D [Escherichia coli MS 45-1] gi|300410735|gb|EFJ94273.1| general secretion pathway protein D [Escherichia coli MS 45-1] gi|315291309|gb|EFU50669.1| general secretion pathway protein D [Escherichia coli MS 153-1] Length = 681 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 370 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 429 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627 >gi|226951776|ref|ZP_03822240.1| general secretion pathway protein [Acinetobacter sp. ATCC 27244] gi|226837491|gb|EEH69874.1| general secretion pathway protein [Acinetobacter sp. ATCC 27244] Length = 735 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 97/253 (38%), Gaps = 26/253 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I EV +Q+G Q + +SG ++ G + G + Sbjct: 384 RQQVLIEAAIIEVVGGDAEQLGVQWVLGDLNSGVGLVNFSNLGSGLSKIAAGYLTGGAVG 443 Query: 253 -------------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 R ++ ++ AL+ T L+ P++ + + A G Sbjct: 444 AAGAFGDGASIGLGNFENPRRAYGALIQALKANTKSNFLSTPSIVTMDNEEAYIVVGQNV 503 Query: 294 LYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + T S +T T+V D G+ L P + G I L ++ EVS Sbjct: 504 PFVTGSVATQGNSTVNPYTTVERKDVGITLKVVPHIGEGGSIRLEVEQEVSNVQPNRGQA 563 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 R T+V G T++L GL+ DD ++ IP+L IP LG LFR + + Sbjct: 564 TDLVTSKRAIKTSVLADHGQTVILGGLISDDTNLTRQSIPVLGDIPYLGRLFRADTRSND 623 Query: 407 ETEIFIAATPFLV 419 + + + P +V Sbjct: 624 KRNLLVFIHPTIV 636 >gi|90414685|ref|ZP_01222656.1| putative type II secretory pathway, component EpsD [Photobacterium profundum 3TCK] gi|90324227|gb|EAS40802.1| putative type II secretory pathway, component EpsD [Photobacterium profundum 3TCK] Length = 670 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 57/287 (19%), Positives = 113/287 (39%), Gaps = 42/287 (14%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------TGSSSGPSKSFA- 231 + + ++ L+I QV ++ I E+ G Q+ G+S P +A Sbjct: 330 ALESIIAQLDIR-RAQVLIEAMIVELSEGDGINFGVQYGSEDGGVIQFGNSGVPISQYAI 388 Query: 232 ---------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 DF GG + + +++A+ Sbjct: 389 GLQEAQDVPGSTVTDVNGNVTVNEPTQGDFSTLASVLGGVNGAAMGIVLGDWTMLVNAVA 448 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFT 319 + L+ P++T + ASF G + T S + +V + G+ L+ T Sbjct: 449 TDSNSNILSSPSITVMDNGEASFIVGEEVPVVTGSTSSSSNDNPFQTVERKEVGIKLNVT 508 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + L+I+ EVS + A D+ + R+ +T+V + G I L GL+ ++ + Sbjct: 509 PQINEGDSVQLKIEQEVSSVLGASGAVDV-RFAKRQINTSVLVQDGQMIALGGLISEETK 567 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + +P+L IP LG LF+++ +T + + P +++ D Sbjct: 568 ESESKVPILGDIPFLGFLFKSTNTTTAKTNLMVFIKPTIIRDGVTAD 614 >gi|294649022|ref|ZP_06726469.1| general secretion pathway protein [Acinetobacter haemolyticus ATCC 19194] gi|292825090|gb|EFF83846.1| general secretion pathway protein [Acinetobacter haemolyticus ATCC 19194] Length = 735 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 97/253 (38%), Gaps = 26/253 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I EV +Q+G Q + +SG ++ G + G + Sbjct: 384 RQQVLIEAAIIEVVGGDAEQLGVQWVLGDLNSGVGLVNFSNLGSGLSKIAAGYLTGGAVG 443 Query: 253 -------------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 R ++ ++ AL+ T L+ P++ + + A G Sbjct: 444 AAGAFGDGASIGLGNFENPRRAYGALIQALKANTKSNFLSTPSIVTMDNEEAYIVVGQNV 503 Query: 294 LYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + T S +T T+V D G+ L P + G I L ++ EVS Sbjct: 504 PFVTGSVATQGNSTVNPYTTVERKDVGITLKVVPHIGEGGSIRLEVEQEVSNVQPNRGQA 563 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 R T+V G T++L GL+ DD ++ IP+L IP LG LFR + + Sbjct: 564 TDLVTSKRAIKTSVLADHGQTVILGGLISDDTNLTRQSIPVLGDIPYLGRLFRADTRSND 623 Query: 407 ETEIFIAATPFLV 419 + + + P +V Sbjct: 624 KRNLLVFIHPTIV 636 >gi|9626321|ref|NP_040655.1| hypothetical protein Pf3_5 [Pseudomonas phage Pf3] gi|138034|sp|P03668|VG430_BPPF3 RecName: Full=Putative assembly protein ORF430; Short=ORF430; Flags: Precursor gi|215375|gb|AAA88381.1| unknown protein [Pseudomonas phage Pf3] gi|215384|gb|AAA88390.1| unknown protein [Pseudomonas phage Pf3] Length = 430 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 100/240 (41%), Gaps = 5/240 (2%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + + V+ +++ QV ++ + E D K++G S S A D V Sbjct: 173 ALESVIQAIDVP-VRQVAIEANVVEASVDWSKRLGLNWGGALSLGNWSAVTAGDLS---V 228 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G + + S + + A+E R ++ PTL + QSAS G + Y+ S Sbjct: 229 AAGSSIGFGFLSNTLSLDGLFTAMENEGNGRVVSRPTLLTLDRQSASVLRGTELPYQQ-S 287 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + GATSV + L P + I + + P +P + TT Sbjct: 288 AGDGATSVAFKHAALSLEVKPVISPDNSIVIEVLVSRDSPNFSNAIDGVPPIDTNRLVTT 347 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P G T+VL G+ QQ + +S+IP +G LF+ E+ E+ I TP ++ Sbjct: 348 IRVPHGQTVVLGGVYSTINQQGSSRVSGISRIPGIGRLFKKKEHVTEQYELLIFLTPRIL 407 >gi|121607022|ref|YP_994829.1| type IV pilus secretin PilQ [Verminephrobacter eiseniae EF01-2] gi|121551662|gb|ABM55811.1| type IV pilus secretin PilQ [Verminephrobacter eiseniae EF01-2] Length = 712 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 65/320 (20%), Positives = 122/320 (38%), Gaps = 46/320 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEV 205 G T S+R ++E +Q A+ ++++ L++A QV ++ I E Sbjct: 396 AGGSSTRFLSERGSAIAEPRTNQLFVTDTASKQEEVRQLLARLDVA-VRQVMIEARIVEA 454 Query: 206 RRDILKQIGFQHSITGSS-----------------------------SGPSKSFAADFGG 236 R + +G + T S SG + S A D GG Sbjct: 455 RDSFGRSLGVRLGSTDLSASRKGTGGYGIGGNKRVAYGTSYSDAVKASGANGSTAPDTGG 514 Query: 237 KFVSEGGDFSVKGVLDRFSFE-----------TVLHALERATAIRTLAEPTLTAISGQSA 285 FV+ S + F+ L A+E R ++ P + A Sbjct: 515 NFVNLPASLSSVNTVGSFALSIFNAATNKFLTLELSAMEADGKGRIVSSPRIITADQTKA 574 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 G ++ Y V++ GAT++ + L +P + G I L + +VS+ G Sbjct: 575 LIEQGTEYPY-AVTAPNGATTLAFKKAVLKLEVSPQITPEGNIILDL--DVSKDSRGETT 631 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + + T + + +GGT+V+ G+ + + + IP L +P++G LF++ Sbjct: 632 SQGVAIDTKHIKTQILIENGGTVVIGGIFEMEETSQENKIPFLGDVPVVGNLFKSKTKET 691 Query: 406 EETEIFIAATPFLVKPVAMR 425 + E+ I TP ++ + Sbjct: 692 TKREMLIFITPKVIADSGPK 711 >gi|152989153|ref|YP_001346800.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] gi|150964311|gb|ABR86336.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] Length = 634 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 119/264 (45%), Gaps = 22/264 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---FGGKF 238 V+ L+ QV ++ I EV DI + +G Q + SF G Sbjct: 325 DNVIAQLDRP-RAQVLVEAAIVEVSGDINEALGVQWAARAGDVAGGTSFGNGGLTIGSLL 383 Query: 239 VSEGG------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 E G D ++ G+ R +F ++ AL + L+ P+L + ++A G Sbjct: 384 NQEAGKRPNLPDGAIIGIGSR-NFGALVTALSSDSNNNLLSTPSLLTLDNEAAEILVGQN 442 Query: 293 HLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---G 342 ++T S +T + T+V D G+ L TP + + L+++ E SE G Sbjct: 443 VPFQTGSYTTDSAGASNPFTTVERKDVGITLKVTPHINEGDTLRLKVEQESSELASAPAG 502 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++ D+ + R +T+ G IV+ GL+KD+++ +PLL IP+LG LFR+++ Sbjct: 503 ISTSDVIT-NKRSVKSTILADDGQIIVIGGLIKDNVKTQVSKVPLLGSIPLLGRLFRSTK 561 Query: 403 FNREETEIFIAATPFLVKPVAMRD 426 E+T + + P L++ A D Sbjct: 562 DVNEKTNLMVFLRPTLLRNTANAD 585 >gi|237801193|ref|ZP_04589654.1| general secretion pathway protein D [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024050|gb|EGI04107.1| general secretion pathway protein D [Pseudomonas syringae pv. oryzae str. 1_6] Length = 333 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 117/309 (37%), Gaps = 21/309 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEV 205 G + + ++ S + + K++ + + QV ++ I EV Sbjct: 12 SGSAGNGKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEV 71 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKFVSEGGDFSVKGVLDRF-------SFE 257 +G Q + + + A+ G + G + G D F + + Sbjct: 72 SLTGELDMGVQWYLGRLAGNSGTTGNVANTAGSQGALGTGGAALGATDAFFYSFVSNNLQ 131 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHD 311 L ALER + L+ P+L ++ Q A G S++T +SV Sbjct: 132 VALRALERNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQ 191 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTI 368 GV+L P + G + + IQ +VS + P R T V SG TI Sbjct: 192 TGVILDVVPRINPGGLVYMDIQQQVSNADNNASNNDANGNPRISSRSVSTQVAAQSGQTI 251 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +L GL+K D + + +P L +IP L LF + ++ TE+ + TP ++ + Sbjct: 252 LLGGLIKQDNAETVDAVPYLGRIPGLRWLFGTTSKSKGRTELIVLITPRVI--TSSSQAR 309 Query: 429 RPDDHYSVE 437 + D Y + Sbjct: 310 QVTDDYRQQ 318 >gi|254515204|ref|ZP_05127265.1| general secretion pathway protein D [gamma proteobacterium NOR5-3] gi|219677447|gb|EED33812.1| general secretion pathway protein D [gamma proteobacterium NOR5-3] Length = 682 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 116/319 (36%), Gaps = 52/319 (16%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAA 232 ++ + V+ L+I QV ++ I E+ + +G Q GSS S + A Sbjct: 333 AAVESVITRLDIR-RAQVLVEAIIVELEVTDGQDLGLQWLFANDNGFYGSSINASDARAR 391 Query: 233 DFGGKFVSEGGDFSVKGVLDRF--------------------------SFETVLHALERA 266 + G + GD F S +L+ALE Sbjct: 392 NIAGAILPPDGDGGSGATTGDFDVGNLAAALAGSAGLSLGWGVVGEDLSMTVILNALEEQ 451 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLH 317 + L+ P+L + + A T G Q + T S + ++ + G+ L Sbjct: 452 SNANILSTPSLLTLDNEEAFITVGQQVPFITGSFTNTGGNNGAQNPFQTIERENVGITLT 511 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP----SYRVRKADTTVELPSGGTIVLAGL 373 TP V + L I+ EV+ RK T V G +VL GL Sbjct: 512 VTPQVNEGDSVVLEIEQEVNSLTGATLVASAAAADLITNERKIRTKVLAEDGRIVVLGGL 571 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP--- 430 +KDD+Q ++ +P+L IP LG LFRN + +T + I P +++ + Sbjct: 572 IKDDVQSTEQRVPILGDIPFLGRLFRNDAVSVSKTNLMIFIRPTIIRDDKALAGATALKY 631 Query: 431 ---DDHYSVEDDAKAFFFN 446 D V+ + FF Sbjct: 632 RHIRDEQRVQKEQGLMFFG 650 >gi|2853000|gb|AAC38777.1| XqhA [Pseudomonas aeruginosa] Length = 713 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 74/312 (23%), Positives = 122/312 (39%), Gaps = 38/312 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231 + ++ L++ Q+ ++ I E+ +I +G Q ++ FA Sbjct: 340 EDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLL 398 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A GK +E D ++ G+ R F ++ AL R + L+ P+L + Q A G Sbjct: 399 GALQAGKPPAELPDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVG 457 Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 ++T S +T A T+V D GV L TP + + L I+ E+S Sbjct: 458 QNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTA 517 Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 R +TV G IVL GL++DD+Q+ +PLL IP +G LFR+ Sbjct: 518 TLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRS 577 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 SR R + + + P +V+ A + R I + A+ Sbjct: 578 SRETRVKRNLMVFLRPSIVRDAAG---------------LERISHGRYRSIQLLRGAAGE 622 Query: 461 EGQNYKGAIGFI 472 + G I Sbjct: 623 PARPLFEDAGAI 634 >gi|153870872|ref|ZP_02000179.1| Bacterial type II and III secretion system protein [Beggiatoa sp. PS] gi|152072664|gb|EDN69823.1| Bacterial type II and III secretion system protein [Beggiatoa sp. PS] Length = 698 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 94/261 (36%), Gaps = 36/261 (13%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS---SSGPSKSFAADFGGKFVSEGGDFSVK-- 248 QV ++ I + K +G + + + G F GG GG Sbjct: 437 RQVLIESRIVIANNNFSKALGVKFGYSANEDLGFGNGIVFGGKKGGDTTFSGGTGFSSDN 496 Query: 249 -----------------------------GVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G + + + L A++ + ++ P + Sbjct: 497 TATGEGQGENFIVSLPAAIANPAAVGLAIGKIGSYLLQLELSAMQSEGSGEIISNPRIIT 556 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + Q A T G + Y + V + L TP + R+ + + + P Sbjct: 557 GNQQEAIITQGTEIPYVQQAGVGSVAQVQFKQAVLELKVTPQITPDDRVNMELAVKKDSP 616 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 GVN G S R+ T V + +G T+VL G+ + IP + +P++G LF+ Sbjct: 617 --GVNIGGNLSIDKREVKTNVLVDNGETVVLGGVYERTRSNAINRIPFFADLPLIGELFK 674 Query: 400 NSRFNREETEIFIAATPFLVK 420 N + +++E+ I TP ++K Sbjct: 675 NRSKSDDKSELLIFVTPKILK 695 >gi|294625731|ref|ZP_06704351.1| general secretion pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599967|gb|EFF44084.1| general secretion pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 763 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 79/328 (24%), Positives = 131/328 (39%), Gaps = 49/328 (14%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + + +E+ D V + AV + T L +S + SS + V+ L++ Sbjct: 434 GNGAVTLEVAGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 480 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKFV 239 QV ++ +AEV Q G + S +S D G Sbjct: 481 -PMQVHIEAQVAEVNLTGELQYGVNWYFENAVNAATAAGGAGLPSAAGRSIWGDISGTVT 539 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G ++ G + V+ AL+ T +R L P++ + A+ G + + S Sbjct: 540 NGGVGWTFLGK----NAAAVISALDTVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTS 595 Query: 300 SSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------ 347 +TG +SV D GV+L P V G + L I E+S P A Sbjct: 596 INTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEISTPGARPQACTAAATTT 655 Query: 348 ------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 R+ T + SG T++LAGL+ D + G+P LSK+P++GALF Sbjct: 656 VNSAACNVDINTRRVKTEAAVQSGDTMMLAGLIDDSTTDISAGVPFLSKLPVVGALFGQK 715 Query: 402 RFNREETEIFIAATPFLVK-PVAMRDLS 428 + E+ + TP +V+ P R+L+ Sbjct: 716 NKDTNRREVIVLITPTIVRNPQEARNLT 743 >gi|15600233|ref|NP_253727.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa PAO1] gi|12230952|sp|P34750|PILQ_PSEAE RecName: Full=Fimbrial assembly protein pilQ; Flags: Precursor gi|9951330|gb|AAG08425.1|AE004917_4 Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa PAO1] Length = 714 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 109/287 (37%), Gaps = 39/287 (13%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------- 218 + Q +++++ L+I QV ++ I E K +G + Sbjct: 428 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKD 486 Query: 219 ---------------ITGSSSGPSKSFA------ADFGGKFVSEGGDFSVKGVLDRFSFE 257 I GS + P+ + D G K + G + + D + Sbjct: 487 GNIGIKDEDGMNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSG--IGIGFITDNIILD 544 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 L A+E+ +++P + ++A G + Y+ SSS ++ + + + L Sbjct: 545 LQLSAMEKTGNGEIVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLE 603 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + RI + ++ P +P + + + + G TIV+ G+ ++ Sbjct: 604 VTPQITPDNRIIVEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNE 663 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + E +P L ++P LG LFR + E+ + TP ++ A+ Sbjct: 664 QSKSVEKVPFLGELPYLGRLFRRDTVTDRKNELLVFLTPRIMNNQAI 710 >gi|324119774|gb|EGC13654.1| general secretion pathway protein D [Escherichia coli E1167] Length = 686 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|123443753|ref|YP_001007724.1| general secretion pathway protein D [Yersinia enterocolitica subsp. enterocolitica 8081] gi|27529236|emb|CAC83029.1| Yts1D protein [Yersinia enterocolitica (type 0:8)] gi|122090714|emb|CAL13590.1| general secretion pathway protein D [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 658 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 59/285 (20%), Positives = 108/285 (37%), Gaps = 18/285 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++V+N L+I QV ++ I EV+ +G Q + G + S Sbjct: 348 EQVINQLDIR-RAQVLVEAIIVEVQDSDALNLGVQW-FNRNGGGSNFPENGASASSITSN 405 Query: 242 GGDFSVKGVLD------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 S+KG+ R ++ + AL + LA P++ + A F+ G + Sbjct: 406 DMGSSLKGITGLATGFYRGNWSGLFTALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPV 465 Query: 296 KTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDM 348 + S +T +V G+ L P + + L I+ EVS G Sbjct: 466 LSGSQTTTGDNIFRTVDRKSVGIKLKVKPQINKGDSVLLEIEQEVSSVAEKAPGGTGDLG 525 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ R V + S +V+ GLL + +PLL IP +G LFR++ + Sbjct: 526 ATFNTRMVKNAVMVGSNNIVVVGGLLDSTSHDVTSKVPLLGDIPGIGFLFRSTSQKMVKR 585 Query: 409 EIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFN-RVNK 450 + + P +++ + + D + E D R+N+ Sbjct: 586 NLMLFIRPTIIREQGDYVDASKKKLDKFQQEQDIDRTTNGQRINE 630 >gi|54302290|ref|YP_132283.1| Flp pilus assembly protein [Photobacterium profundum SS9] gi|46915712|emb|CAG22483.1| hypothetical Flp pilus assembly protein [Photobacterium profundum SS9] Length = 296 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 114/261 (43%), Gaps = 31/261 (11%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 ++V + + IS+ NK ++++P + + V +P AD+++ +Y+ GK G NV Sbjct: 28 TNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNKIYVLGKQFGTTNV 87 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 I+ + + LD+ + D+ L+ L F+ + I V + +VL G V + Sbjct: 88 IIWDSRDQLITVLDVEVTHDLNALKSKLYEFMPNEKISVYTSQNKLVLSGEVSSADKIAT 147 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 AVE++ TF ++ +++NL+ + G QV L+VT+AEV+R ++++ + + Sbjct: 148 AVEIANTF-----------TADGEIINLMAVGGSHQVMLEVTVAEVQRSLVREFDSKF-V 195 Query: 220 TGSSSGPSKSFAADFGGKFVSEGG-------------------DFSVKGVLDRFSFETVL 260 SG A+ G S G + F Sbjct: 196 FAHQSGNWTWGGANGGASVPSNVGIIDPIIDAAISNPLSIDDNGLFASFLSSNTLFAAAF 255 Query: 261 HALERATAIRTLAEPTLTAIS 281 + + LAEPTLTAIS Sbjct: 256 DIAKTNGLAKVLAEPTLTAIS 276 >gi|89075297|ref|ZP_01161724.1| MSHA biogenesis protein MshL [Photobacterium sp. SKA34] gi|89048978|gb|EAR54546.1| MSHA biogenesis protein MshL [Photobacterium sp. SKA34] Length = 541 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 26/299 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 V+ GM+ + D + + + L K+ + + + QV L+ I EV Sbjct: 220 VVSGMIGS-GDGRNVMVSPQAGLISVRAFPNELREVKEFLGMSQRRLKRQVVLEAKIMEV 278 Query: 206 RRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 D Q G S G ++G + A GG +SE L +F+ V+ Sbjct: 279 TLDDSYQQGINWSYLTKSGNGITTGTASIVEALPGGNAISELLGGQTNITLSDGNFKAVM 338 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----------SVTTH 310 L + L+ P +TA + Q A GG + T SS+ + S+T Sbjct: 339 SFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNNVSPDVSLTPF 398 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS----------YRVRKADTTV 360 G+ L TP + G + L + V + ++ + +R++D+ + Sbjct: 399 FSGISLDVTPQIDDQGGVLLHVHPAVIDVQNEQKTIEVGTEKPMVLPLAKSTIRESDSII 458 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G +V+ GL+K I +PLL IP +G LFR+ +++TE+ I P +V Sbjct: 459 HARTGDVVVIGGLMKSSINDQVSKVPLLGDIPWVGNLFRHINKVKKKTELVILLKPTVV 517 >gi|192361327|ref|YP_001983786.1| general secretion pathway protein D [Cellvibrio japonicus Ueda107] gi|190687492|gb|ACE85170.1| General secretion pathway protein D [Cellvibrio japonicus Ueda107] Length = 681 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 120/317 (37%), Gaps = 54/317 (17%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------------- 229 +++ L+I QV ++ IAEV + K++G + G S Sbjct: 343 IVDSLDIR-RAQVLVEAIIAEVSDEDGKELGIEWMYRDDKYGFGASANGSRGSIGGIGSA 401 Query: 230 -----------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 A G G F + +R F VL ++ ++ L Sbjct: 402 VLAASDKNASQDDKDTALANLASGLSGLSGQMFGFGRLGERTDFLAVLKLMQSSSKTNIL 461 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFTPT 321 + P+L A + G Q ++T S S T ++ D G+ L TP Sbjct: 462 STPSLLTTDNNQAVISVGRQVPFRTGSYSAVGTGGNSTIGSPFTTINREDVGLKLEVTPH 521 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + I L I+ EVS + V++ D R+ T + G TIVL GL+ D++Q Sbjct: 522 INEGDSIVLDIKQEVSS-LSDVSSEDGIITNKREIQTQILSSDGETIVLGGLITDEVQTG 580 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 + +P+L IP+LG LFR+ ++ +T + + +V+ DD A+ Sbjct: 581 ERRVPVLGSIPVLGQLFRSQTSSKSKTNLLVFIRATVVR----------DDKVLTGSTAE 630 Query: 442 AFFFNRVNKIYGPKEAS 458 + R ++ + Sbjct: 631 KYRLIREEQLNHVRNRG 647 >gi|313110077|ref|ZP_07795979.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa 39016] gi|310882481|gb|EFQ41075.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa 39016] Length = 714 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 108/287 (37%), Gaps = 39/287 (13%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------- 218 + Q +++++ L+I QV ++ I E K +G + Sbjct: 428 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNWNGYGKD 486 Query: 219 ---------------ITGSSSGPSKSFA------ADFGGKFVSEGGDFSVKGVLDRFSFE 257 I G+ + P+ + D G K + G + + D + Sbjct: 487 GNIGIKDEDGMNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSG--IGIGFITDNIILD 544 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 L A+E+ +++P + ++A G + Y+ SSS ++ + + + L Sbjct: 545 LQLSAMEKTGNGEIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLE 603 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + RI + ++ P +P + + + + G TIV+ G+ + Sbjct: 604 VTPQITPDNRIIVEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNT 663 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + + +P L +P LG LFR + + E+ + TP ++ A+ Sbjct: 664 QSKSVDKVPFLGDLPYLGRLFRRDTVSDVKNELLVFLTPRIMNNQAI 710 >gi|218894139|ref|YP_002443008.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa LESB58] gi|218774367|emb|CAW30184.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa LESB58] Length = 714 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 108/287 (37%), Gaps = 39/287 (13%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------- 218 + Q +++++ L+I QV ++ I E K +G + Sbjct: 428 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNWRGYGKD 486 Query: 219 ---------------ITGSSSGPSKSFA------ADFGGKFVSEGGDFSVKGVLDRFSFE 257 I G+ + P+ + D G K + G + + D + Sbjct: 487 GNIGIKDEDGMNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSG--IGIGFITDNIILD 544 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 L A+E+ +++P + ++A G + Y+ SSS ++ + + + L Sbjct: 545 LQLSAMEKTGNGEIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLE 603 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + RI + ++ P +P + + + + G TIV+ G+ + Sbjct: 604 VTPQITPDNRIIVEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNT 663 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + + +P L +P LG LFR + + E+ + TP ++ A+ Sbjct: 664 QSKSVDKVPFLGDLPYLGRLFRRDTVSDVKNELLVFLTPRIMNNQAI 710 >gi|254244078|ref|ZP_04937400.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa 2192] gi|126197456|gb|EAZ61519.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas aeruginosa 2192] Length = 714 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 108/287 (37%), Gaps = 39/287 (13%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------- 218 + Q +++++ L+I QV ++ I E K +G + Sbjct: 428 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNWRGYGKD 486 Query: 219 ---------------ITGSSSGPSKSFA------ADFGGKFVSEGGDFSVKGVLDRFSFE 257 I G+ + P+ + D G K + G + + D + Sbjct: 487 GNIGIKDEDGMNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSG--IGIGFITDNIILD 544 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 L A+E+ +++P + ++A G + Y+ SSS ++ + + + L Sbjct: 545 LQLSAMEKTGNGEIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLE 603 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + RI + ++ P +P + + + + G TIV+ G+ + Sbjct: 604 VTPQITPDNRIIVEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNT 663 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + + +P L +P LG LFR + + E+ + TP ++ A+ Sbjct: 664 QSKSVDKVPFLGDLPYLGRLFRRDTVSDVKNELLVFLTPRIMNNQAI 710 >gi|319789878|ref|YP_004151511.1| type II and III secretion system protein [Thermovibrio ammonificans HB-1] gi|317114380|gb|ADU96870.1| type II and III secretion system protein [Thermovibrio ammonificans HB-1] Length = 663 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 105/257 (40%), Gaps = 30/257 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------ 246 QV +K I ++ K +GF I+G + + + G + ++ Sbjct: 397 SKQVLVKAKIVQLSAKAEKDLGFTWFISGYNRLGDSNLSTYTAGSYGFNTAGYTPLISPD 456 Query: 247 ---------------VKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G+L++ E L ALE + ++ P + + Q AS Sbjct: 457 TYANVSKIPVMDSTLALGILNKAQTLRVELALKALEVDGDAQIISSPKVLTLDNQEASIE 516 Query: 289 SGGQHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IG 342 G + Y+ + G + + ++L P + I L I+ P + Sbjct: 517 QGIEIPYRESTVGAGGATSYRIAFKKASLILKVKPHITKDNNILLDIEVRKDSPNYDYVA 576 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + G+ P+ R + V + +G T+V+ G+ + + + + G+P+LS+IP+LG LF+N Sbjct: 577 ITGGNEPAINTRNVKSRVMIRNGDTVVIGGIYEKERSKSQSGVPVLSRIPLLGWLFKNQT 636 Query: 403 FNREETEIFIAATPFLV 419 ++++ I TP L+ Sbjct: 637 VQVTKSKLLIFITPVLI 653 >gi|289668624|ref|ZP_06489699.1| general secretion pathway protein D [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 760 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 81/327 (24%), Positives = 129/327 (39%), Gaps = 44/327 (13%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + + +++ D V + AV + T L +S + SS + V+ L++ Sbjct: 428 GNGAVTLDVSGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 474 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSI---------TGSSSGPSKSFAA--DFGGKFVS 240 QV ++ IAEV G S GP+ AA + G Sbjct: 475 -PMQVHIEAQIAEVNLTGELSYGVNWYFENAVTTPFNADGSGGPALPSAAGRNIWGDIAG 533 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V + V++AL+R T +R L P++ + A+ G + + S Sbjct: 534 SVTGNGVGWTFLGKNAAAVINALDRVTNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSI 593 Query: 301 STG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------- 347 +TG +SV D GV+L P V G + L I EVS P A Sbjct: 594 NTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAATTTTV 653 Query: 348 -----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 R+ T + SG T++LAGL+ D G+P LSK+P++GALF Sbjct: 654 NSAACNVDINTRRVKTEAAVQSGDTMMLAGLIDDSTSDGSAGVPFLSKLPVVGALFGQKT 713 Query: 403 FNREETEIFIAATPFLVK-PVAMRDLS 428 + E+ + TP +V+ P R+L+ Sbjct: 714 RDNTRREVIVLITPSIVRNPQEARNLT 740 >gi|107104140|ref|ZP_01368058.1| hypothetical protein PaerPA_01005213 [Pseudomonas aeruginosa PACS2] Length = 714 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 109/287 (37%), Gaps = 39/287 (13%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------- 218 + Q +++++ L+I QV ++ I E K +G + Sbjct: 428 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKD 486 Query: 219 ---------------ITGSSSGPSKSFA------ADFGGKFVSEGGDFSVKGVLDRFSFE 257 I GS + P+ + D G K + G + + D + Sbjct: 487 GNIGIKDEDGMNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSG--IGIGFITDNIILD 544 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 L A+E+ +++P + ++A G + Y+ SSS ++ + + + L Sbjct: 545 LQLSAMEKTGNGEIVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLE 603 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + RI + ++ P +P + + + + G TIV+ G+ ++ Sbjct: 604 VTPQITPDNRIIVEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNE 663 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + E +P L ++P LG LFR + E+ + TP ++ A+ Sbjct: 664 QSKSVEKVPFLGELPYLGRLFRRDTVTDRKNELLVFLTPRIMNNQAI 710 >gi|257485358|ref|ZP_05639399.1| general secretion pathway protein GspD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 341 Score = 179 bits (455), Expect = 8e-43, Method: Composition-based stats. Identities = 61/262 (23%), Positives = 103/262 (39%), Gaps = 19/262 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ I EV +G Q + +SG + + G + G ++ Sbjct: 67 PLQVQIETRILEVSLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 126 Query: 251 LDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTV 298 F + + L ALE + L+ P+L ++ Q A G Sbjct: 127 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 186 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRK 355 S++T +SV GV+L P + G + + IQ +VS D P R Sbjct: 187 STNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRS 246 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V SG T++L GL+K D + +P L +IP L LF ++ ++ TE+ + T Sbjct: 247 VATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLIT 306 Query: 416 PFLVKPVAMRDLSRPDDHYSVE 437 P ++ + + D Y + Sbjct: 307 PRVI--TSSSQARQVTDDYRQQ 326 >gi|294146464|ref|YP_003559130.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] gi|292676881|dbj|BAI98398.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum UT26S] Length = 385 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 120/258 (46%), Gaps = 17/258 (6%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEG---- 242 + AGE V + V A V LK +GF S ++G G S ++ F +G Sbjct: 92 IVRAGEQVVAVDVQFAAVSATTLKALGFNFSKLSGDIQGAIVSPSSLGSASFNPDGLALE 151 Query: 243 ------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 F++ VL AL + LA+PTL SG+ ASF +GG+ Sbjct: 152 ASAPIQNAFNLFLSAPNRGIGAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEFPVP 211 Query: 297 T--VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPS 350 VS S S+ ++GV L TP VLS I L+I EVS + + +P Sbjct: 212 VPQVSGSGNTLSIQYKEFGVRLSVTPFVLSKDHIVLKIAPEVSELDYNNGVQLQGYVVPG 271 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R R A+TTVEL SG + V+AGL KE PL IP+LGA F+ + +E+ E+ Sbjct: 272 LRRRSAETTVELGSGQSFVIAGLSYSSQTVTKEKTPLFGDIPVLGAFFKRQQNQKEKQEL 331 Query: 411 FIAATPFLVKPVAMRDLS 428 I ATP LV P+ ++ Sbjct: 332 IIVATPRLVGPMKPEEVP 349 >gi|319761377|ref|YP_004125314.1| general secretion pathway protein d [Alicycliphilus denitrificans BC] gi|317115938|gb|ADU98426.1| general secretion pathway protein D [Alicycliphilus denitrificans BC] Length = 767 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 115/278 (41%), Gaps = 15/278 (5%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L G VR + D +R L ++ R + A K QV ++ +I EV Sbjct: 449 LEGNVRVVADDKRNALLIRAPRAEYRRIEQALRELDK--------APTQVLIEASIVEVS 500 Query: 207 RDILKQIGFQHSITGSSSGPSKS---FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + G + I S SG + G + FS + + L+AL Sbjct: 501 LTGNLKYGVEWFIQNSLSGDRTGQALLNMNNSGSIGPQQPGFSYTILNKAGAVRATLNAL 560 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFT 319 + +R L+ P++ + SA+ G Q K ++ T S+ D GV+L T Sbjct: 561 AANSQLRVLSNPSVLVLDNHSATILVGKQQPIKQSTTVTTGNLVTESIVYKDTGVMLSVT 620 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P+V + G + L I +V++ A S+ R+ + V + SG IVL G++ ++ Sbjct: 621 PSVNAGGLVTLDINQQVTDVGDVDAATGQRSFLTRQIQSRVAVRSGDPIVLGGVMSENQS 680 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 G+P L +P+LGALF TE+ + TP Sbjct: 681 TGNSGVPGLRDVPVLGALFSTDTTTSARTELLVVLTPR 718 >gi|293406579|ref|ZP_06650505.1| hypothetical protein ECGG_01885 [Escherichia coli FVEC1412] gi|291426585|gb|EFE99617.1| hypothetical protein ECGG_01885 [Escherichia coli FVEC1412] Length = 679 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 368 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 427 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625 >gi|150260167|ref|ZP_01916895.1| general secretion pathway protein D [Yersinia pestis CA88-4125] gi|165925049|ref|ZP_02220881.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. F1991016] gi|165937283|ref|ZP_02225847.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. IP275] gi|167419065|ref|ZP_02310818.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167466632|ref|ZP_02331336.1| general secretion pathway protein D [Yersinia pestis FV-1] gi|218927995|ref|YP_002345870.1| general secretion pathway protein D [Yersinia pestis CO92] gi|229840719|ref|ZP_04460878.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842725|ref|ZP_04462879.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. India 195] gi|115346606|emb|CAL19488.1| general secretion pathway protein D [Yersinia pestis CO92] gi|149289575|gb|EDM39652.1| general secretion pathway protein D [Yersinia pestis CA88-4125] gi|165914757|gb|EDR33370.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. IP275] gi|165923249|gb|EDR40400.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. F1991016] gi|166963059|gb|EDR59080.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229690205|gb|EEO82260.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. India 195] gi|229697085|gb|EEO87132.1| general secretion pathway protein D [Yersinia pestis biovar Orientalis str. PEXU2] Length = 640 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 98/249 (39%), Gaps = 14/249 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKF 238 +V+ L+I QV ++ I E + +G + S + S + G Sbjct: 336 EVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNSDGLLNNNGWGI 394 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + + +++ +L AL T LA P++ + A F G + Sbjct: 395 ATTITGLTAG--FYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNVGQEVPVLIS 452 Query: 299 SSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSY 351 + +T S++ GV+L P + + L I+ EVS + Sbjct: 453 TQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVF 512 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R + V + SG T+V+ GLL + +P L +P++G LFR ++ E++ + Sbjct: 513 NKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLI 572 Query: 412 IAATPFLVK 420 + P +++ Sbjct: 573 LFIKPTILR 581 >gi|329120652|ref|ZP_08249315.1| type IV pilus biogenesis protein PilQ [Neisseria bacilliformis ATCC BAA-1200] gi|327460876|gb|EGF07210.1| type IV pilus biogenesis protein PilQ [Neisseria bacilliformis ATCC BAA-1200] Length = 695 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 105/267 (39%), Gaps = 29/267 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224 +K++ L++ QV ++ I E ++IG + GS+ Sbjct: 426 EKILEELDVP-ARQVMVETRIVEASDGFSREIGVKFGYAGSNGKNSWGSNWANAQANNNT 484 Query: 225 ---------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + + + + ++ L + L A + + ++ P Sbjct: 485 NVNASQNNTNRTWTLNPNINLPTTAATSSVALVHALSSGALALELSAQQAQNKAKVISSP 544 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + + A SG + Y+ SSS ++ + + + TP + G+I + I+ Sbjct: 545 RVLTQDRKEAVIESGTEVPYQEASSSGATST-SFKKAVLGMTVTPQITPDGQIIMDIKVN 603 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 A + P ++ DT + +GGT++L G+ +++ + +PLL IP++G Sbjct: 604 KDSVNRNCGASE-PCIDTKRLDTKAMVENGGTLILGGIYEEENSEGVSKVPLLGDIPVVG 662 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPV 422 LF++ N + E+ I TP +V V Sbjct: 663 NLFKSRSRNTSKKELLIFITPRIVDNV 689 >gi|222109862|ref|YP_002552126.1| general secretion pathway protein d [Acidovorax ebreus TPSY] gi|221729306|gb|ACM32126.1| general secretion pathway protein D [Acidovorax ebreus TPSY] Length = 781 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 109/284 (38%), Gaps = 35/284 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ QV ++ I EV + + + G Q + G + + Sbjct: 423 RAVIDKLD-GRRAQVLIESLIVEVSANKVAEFGIQWQGVLGNYGSTLGVLGNNSSVAGRN 481 Query: 242 GGDFSVKGVLDRFS------------------------FETVLHALERATAIRTLAEPTL 277 D ++ + + + LE L+ P L Sbjct: 482 ILDLALAAATGNVTSIASAKPAAGMNLAVAPRINGKYYLGALANFLENTGDANVLSTPNL 541 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRI 328 + + A G + T S + T+V D G++L P + G + Sbjct: 542 LTLDNEEAQIIIGNNVPFVTGSYANTGGSGGAVNPFTTVERKDVGLMLRVRPQINENGTV 601 Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L + EVS+ + + PS R ++TV + G IV+ GLL+D+ ++ +P+ Sbjct: 602 KLTMYQEVSKVAESTLSNANGPSTSKRSIESTVLVDDGSVIVIGGLLEDNYALNQDKVPV 661 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + +P++G LFRN + R++T + + P +++ A D D Sbjct: 662 MGDLPVVGGLFRNEKRTRQKTNLMVFLRPMVIRDSAASDALMVD 705 >gi|254482717|ref|ZP_05095955.1| type IV pilus secretin PilQ subfamily, putative [marine gamma proteobacterium HTCC2148] gi|214037076|gb|EEB77745.1| type IV pilus secretin PilQ subfamily, putative [marine gamma proteobacterium HTCC2148] Length = 692 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 59/326 (18%), Positives = 120/326 (36%), Gaps = 47/326 (14%) Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L + ++ + +VV+ ++ + A +L+E ++++ Sbjct: 381 LFQAGSEDGGSLISQRGSVVVDARTNSLIITDTAAKLAEI---------------RELIE 425 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------- 237 ++I QV ++ I + D+ +G + +A + Sbjct: 426 QVDIP-VRQVMIESRIVIAQSDLTHSLGIEWGGGYIDDVNGNILSASGDAQNVIGLNNSI 484 Query: 238 ------------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 V+ F++ + + ALE A +++P + Sbjct: 485 INGETPSVSYPGALLVDLGVASTSGFALGFTSNDLFLTAEISALEAAGQGEVVSQPKVIT 544 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 Q A+ SG + Y+ ++S GATS + + + L TP + R+ L + + Sbjct: 545 GDKQQATIKSGTEIPYQEAAAS-GATSTSFKEAVLELEVTPNITPDDRVMLDLNVKQDSV 603 Query: 340 ---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 V G +PS + T V + +G T+VL G+ K + + +P +P +GA Sbjct: 604 GDLVPSGQGGFIPSIDTTEITTQVLVGNGETVVLGGVFKTEDLETVNKVPFFGDLPYVGA 663 Query: 397 LFRNSRFNREETEIFIAATPFLVKPV 422 FR+ N +TE I TP ++ Sbjct: 664 FFRSESRNNTKTETLIFITPRILADT 689 >gi|146294651|ref|YP_001185075.1| general secretion pathway protein D [Shewanella putrefaciens CN-32] gi|145566341|gb|ABP77276.1| general secretion pathway protein D [Shewanella putrefaciens CN-32] Length = 703 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 110/282 (39%), Gaps = 45/282 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394 Query: 236 -------GKFVSEGGDFSVKGV------------------------LDRFSFETVLHALE 264 G +++ V G + F ++ A+ Sbjct: 395 WQAQDKEGTYITNPSTGEVIGKNPDTQGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVS 454 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFT 319 T LA P++T + Q ASF G + T S+++ +V + GV L Sbjct: 455 SDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 514 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + L I+ EVS + N G S+ R+ TTV SG +VL GL+ +++Q Sbjct: 515 PQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEVQ 572 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +P L IP+LG LF++S + + + I P +++ Sbjct: 573 ESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIRD 614 >gi|30248714|ref|NP_840784.1| general (type II) secretion pathway (GSP) D protein [Nitrosomonas europaea ATCC 19718] gi|30180309|emb|CAD84616.1| General (type II) secretion pathway (GSP) D protein [Nitrosomonas europaea ATCC 19718] Length = 697 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 70/379 (18%), Positives = 146/379 (38%), Gaps = 23/379 (6%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + NK + + ++ + DV + ++++ G A ++ Sbjct: 299 LGVAQNKSDLELLREWIERL--------DVSKLGAQRIFVYNVQNGNAKDLVAPLRQVLT 350 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + + +S + G + E + Sbjct: 351 GEMQATTASGTTVSPTSTPMSTPQMPAAAPSLSAEPSISGSQTNVGRLVAIEENNSLMFY 410 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 + + K +++L QV ++ +AEV + + G Q S + + Sbjct: 411 GTEDEFRVIQEALKQIDVL----PRQVMIEAFLAEVTLNNNLRYGVQWFF--DSGENTVT 464 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +A G S+ FS + + VL+AL+ T ++ L+ P ++ ++ Q AS Sbjct: 465 LSATDVGSVASQFPGFSYI-YAGKANARIVLNALQSKTEVKILSAPKISVLNNQKASLQV 523 Query: 290 GGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 G Q T +S ++ D GV+L P V G + L + EVSE Sbjct: 524 GDQVPIVTQTSQGTVVSGAPVINTIQMRDTGVILEVIPRVNDNGNVILDVTQEVSEVAQT 583 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 ++G D P+ + RK + + G T+ L GL++++ G+PL+ +P++G LF+++ Sbjct: 584 TSSGIDSPTIQRRKIHSVIATRDGFTVALGGLIRENGSAGNSGVPLIKDVPVIGNLFKSN 643 Query: 402 RFNREETEIFIAATPFLVK 420 + TE+ + P +++ Sbjct: 644 TSDIRRTELVVLLVPHVMR 662 >gi|323978963|gb|EGB74043.1| general secretion pathway protein D [Escherichia coli TW10509] Length = 686 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G + + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATIINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632 >gi|264676808|ref|YP_003276714.1| type IV pilus secretin PilQ [Comamonas testosteroni CNB-2] gi|262207320|gb|ACY31418.1| type IV pilus secretin PilQ [Comamonas testosteroni CNB-2] Length = 704 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 99/249 (39%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + SSSG S F + Sbjct: 451 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSSSGASTKFPSGNFVNL 510 Query: 239 VSEGGDFSVKGVLDRFSFET--------VLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + + G + F + L ALE + ++ P L A G Sbjct: 511 PASVSGVNTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 570 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 ++ Y +V++ GAT+++ + L TP + G I L + +V++ G + Sbjct: 571 TEYPY-SVTAPNGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 627 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PL +P+LG LFR++ + E+ Sbjct: 628 IDTKHVKTQVLVENGGTVVIGGIFELEETNQLNKVPLFGDLPVLGHLFRSNTKASSKREM 687 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 688 LVFITPKML 696 >gi|308272047|emb|CBX28655.1| hypothetical protein N47_G39790 [uncultured Desulfobacterium sp.] Length = 667 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 102/240 (42%), Gaps = 12/240 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK--GV 250 QV ++ IA++ +G +I + G S + S ++ G Sbjct: 379 PRQVMIEGMIAQIDLKDDLSLGLAWAINTKNFGGSPANITFNANGLTSATSSTGLRFIGT 438 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----- 305 + V+ ALE + + LA P + + A+ G Q T S+ +T Sbjct: 439 DSGDAVRAVVTALESQSRGKLLAAPHILVSDNREATIQVGQQVPIVTSSTLATSTQAAQQ 498 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTV 360 ++ D G++L P V G + L I+ EVS V + + + T + Sbjct: 499 TIQYKDIGIILKVKPQVNDSGLVSLEIKQEVSSFSSLSSADTVTSNEDILINKTEVSTNL 558 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G TI++ GL+++D + + GIP L KIPILG LF + + TE+ I TP +VK Sbjct: 559 VVQDGHTIIIGGLIREDKSKSRTGIPWLVKIPILGFLFGGTNDTNKRTELIILLTPHVVK 618 >gi|166713403|ref|ZP_02244610.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzicola BLS256] Length = 766 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 77/318 (24%), Positives = 128/318 (40%), Gaps = 33/318 (10%) Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + + V + AV + T L +S +A S + V+ L++ QV ++ Sbjct: 432 SNGNGAVTLEVEGDKVGVSAVAETNTLLVRSTPQSWA--SIRDVIEKLDVM-PMQVHIEA 488 Query: 201 TIAEVRRDILKQIGFQHSI---------TGSSSGPSKSFAA--DFGGKFVSEGGDFSVKG 249 +AEV Q G + GP+ AA + G + V Sbjct: 489 QVAEVNLTGQLQYGVNWYFENAVTTPFDANDNGGPALPSAAGRNIWGDIAGSVTNTGVGW 548 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ 303 + ++ AL++ T +R L P++ + A+ G + + S +TG Sbjct: 549 TFLGKNAAAIISALDQVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSS 608 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------------MPSY 351 +SV D GV+L P V G + L I E+S P +A Sbjct: 609 FSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEISTPGARPDACTAATTTTVNSAACNVDI 668 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ T + SG TI+LAGL+ D G+P+LSK+P++GALF + E+ Sbjct: 669 NTRRVKTEAAVQSGDTIMLAGLIDDSTTDGSSGVPMLSKLPVVGALFGRKTRDTRRREVI 728 Query: 412 IAATPFLVK-PVAMRDLS 428 + TP +V+ P R+L+ Sbjct: 729 VLITPSIVRNPQEARNLT 746 >gi|167044898|gb|ABZ09565.1| putative bacterial type II and III secretion system protein [uncultured marine crenarchaeote HF4000_APKG8D22] Length = 637 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 69/336 (20%), Positives = 136/336 (40%), Gaps = 46/336 (13%) Query: 104 HDGKQMLNLDILIER-DIAHLEM---TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 D + ++ + + DI L L+ D+ I ++ ++T++L+ Sbjct: 327 RDSEDLVTEVVRVNHADITELSTSLNALKSARKDALITIDTRTNTLILN------DLRHH 380 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 ++ ET + +L+I+ QV ++ I E+ + +++G + Sbjct: 381 VDDMLET------------------IKILDISTP-QVLIEAKIVEISKTFSQELGISWGL 421 Query: 220 TGSSSG-PSKSFAADFGGKFVS-------------EGGDFSVKGVL-DRFSFETVLHALE 264 G P+ + + F +F+ G D ++G L + L ALE Sbjct: 422 VNPEPGFPTVTGNSTFDTQFLVDLRPTVDIATGNVAGFDSLIQGFLPGNIALNVRLEALE 481 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 ++ R ++ P +T + A SG Y+ +S S+ + + L TP V S Sbjct: 482 KSGKGRVISSPRVTTADNKEARVLSGRDIPYQV--NSVEGNSIQFVNAELSLTVTPHVTS 539 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 I + I + A +P+ ++ T V + +G T VLAG+ + + K+ Sbjct: 540 DNSIYMTIDATKNAADFAQLAAGIPTITRKEMHTEVLVGNGETTVLAGIYESTSTENKKA 599 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P SK+P++G LFR E+ + TP +V+ Sbjct: 600 VPWFSKLPLVGFLFRAFDDKDTINELLVFITPTIVE 635 >gi|220936186|ref|YP_002515085.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. HL-EbGR7] gi|219997496|gb|ACL74098.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. HL-EbGR7] Length = 711 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 113/267 (42%), Gaps = 26/267 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFA-ADFGGK-- 237 +++++ L+I QV ++ I D + +G + +TG +G +++F + G Sbjct: 447 RRLIDRLDIP-VQQVLIETRIVIASDDFARDLGARFGVTGVGQTGRTQTFTTGNLSGTTE 505 Query: 238 -------------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 G ++ + + + AL+ ++ P + Sbjct: 506 MIRGDELSLLNRLNTNLPVISPSAGSIALSILRPDVLLDLEISALQVEGRGEIISSPRVI 565 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 +GQ+A G + Y+ +SS GAT+V + + TP + G I L I+ Sbjct: 566 TANGQTARIQQGERIPYQEATSS-GATAVQFIEAVLATEVTPQITPNGNIILNIRVNKDN 624 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 P V G PS R+ +T V + +G T+VL G+ + D + E +P +P + LF Sbjct: 625 PGTLVVQGT-PSIETREVETQVFVRNGETVVLGGVYEIDSLETLEKVPFFGDLPGIRHLF 683 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMR 425 R + + + E+ I TP +++ A+ Sbjct: 684 RRTGKSTRKAELLIFVTPKVIEETALN 710 >gi|299529630|ref|ZP_07043067.1| type IV pilus secretin PilQ [Comamonas testosteroni S44] gi|298722493|gb|EFI63413.1| type IV pilus secretin PilQ [Comamonas testosteroni S44] Length = 704 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-----------------------SSSGPSKSF 230 QV ++ I E R + +G + SG + Sbjct: 451 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSSSGSSSKFPSGNFVNL 510 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A G FSV L ALE + ++ P L A G Sbjct: 511 PASVSGINTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 570 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 ++ Y +V++ GAT+++ + L TP + G I L + +V++ G + Sbjct: 571 TEYPY-SVTAPNGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 627 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +PL +P+LG LFR++ + E+ Sbjct: 628 IDTKHVKTQVLVENGGTVVIGGIFELEETNQLNKVPLFGDLPVLGHLFRSNTKASSKREM 687 Query: 411 FIAATPFLV 419 + TP ++ Sbjct: 688 LVFITPKML 696 >gi|262192447|ref|ZP_06050599.1| general secretion pathway protein D [Vibrio cholerae CT 5369-93] gi|262031711|gb|EEY50297.1| general secretion pathway protein D [Vibrio cholerae CT 5369-93] Length = 707 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 21/254 (8%) Query: 175 QYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFA 231 Q + ++++ LL QV L+ T+AEV+ + +G + +IT G +G S Sbjct: 439 QGQYADYQRLIELLKFVDQRPRQVLLQATVAEVKVEDGFTLGTEFNITSGDITGGSNGLI 498 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 A+ G+ ++ GV A + + L+ P + A+ + A + G Sbjct: 499 AN--------AGNLNLNGVFG--DVTAKFTAALDSGKAQVLSSPRVIAMDQEPARISIGE 548 Query: 292 QHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Q KT S G + D G+ L TPT+ G + L I EVS GV Sbjct: 549 QIQVKTGEVSGGGDDSKATVTYQYVDVGITLDITPTINQNGLVELSISQEVS--SQGVIT 606 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 GD R T + SG TI + GL+ D + +P+L IP++G LF+ + Sbjct: 607 GDSIPINKRSLQTRMLADSGDTIYMGGLISKDNNNSENKVPILGDIPLIGNLFKYRVEKQ 666 Query: 406 EETEIFIAATPFLV 419 TE+ + TP+++ Sbjct: 667 NSTELVLLITPYVI 680 >gi|22127080|ref|NP_670503.1| general secretion pathway protein D [Yersinia pestis KIM 10] gi|45442607|ref|NP_994146.1| general secretion pathway protein D [Yersinia pestis biovar Microtus str. 91001] gi|108806450|ref|YP_650366.1| general secretion pathway protein D [Yersinia pestis Antiqua] gi|108813180|ref|YP_648947.1| general secretion pathway protein D [Yersinia pestis Nepal516] gi|145597997|ref|YP_001162073.1| general secretion pathway protein D [Yersinia pestis Pestoides F] gi|153949658|ref|YP_001399937.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP 31758] gi|162421010|ref|YP_001607617.1| general secretion pathway protein D [Yersinia pestis Angola] gi|166010333|ref|ZP_02231231.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. E1979001] gi|166212712|ref|ZP_02238747.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. B42003004] gi|167399809|ref|ZP_02305327.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167425419|ref|ZP_02317172.1| general secretion pathway protein D [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229837688|ref|ZP_04457848.1| general secretion pathway protein D [Yersinia pestis Pestoides A] gi|229903625|ref|ZP_04518738.1| general secretion pathway protein D [Yersinia pestis Nepal516] gi|270487407|ref|ZP_06204481.1| general secretion pathway protein D [Yersinia pestis KIM D27] gi|294503003|ref|YP_003567065.1| general secretion protein [Yersinia pestis Z176003] gi|21960134|gb|AAM86754.1|AE013921_5 putative general secretion protein [Yersinia pestis KIM 10] gi|45437472|gb|AAS63023.1| putative general secretion protein [Yersinia pestis biovar Microtus str. 91001] gi|108776828|gb|ABG19347.1| general secretion pathway protein D [Yersinia pestis Nepal516] gi|108778363|gb|ABG12421.1| general secretion pathway protein D [Yersinia pestis Antiqua] gi|145209693|gb|ABP39100.1| general secretion pathway protein D [Yersinia pestis Pestoides F] gi|152961153|gb|ABS48614.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP 31758] gi|162353825|gb|ABX87773.1| general secretion pathway protein D [Yersinia pestis Angola] gi|165990819|gb|EDR43120.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. E1979001] gi|166206004|gb|EDR50484.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. B42003004] gi|167050517|gb|EDR61925.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055819|gb|EDR65603.1| general secretion pathway protein D [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679395|gb|EEO75498.1| general secretion pathway protein D [Yersinia pestis Nepal516] gi|229704065|gb|EEO91077.1| general secretion pathway protein D [Yersinia pestis Pestoides A] gi|262361038|gb|ACY57759.1| general secretion protein [Yersinia pestis D106004] gi|262364982|gb|ACY61539.1| general secretion protein [Yersinia pestis D182038] gi|270335911|gb|EFA46688.1| general secretion pathway protein D [Yersinia pestis KIM D27] gi|294353462|gb|ADE63803.1| general secretion protein [Yersinia pestis Z176003] gi|320014111|gb|ADV97682.1| general secretion pathway protein D [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 640 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 98/249 (39%), Gaps = 14/249 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKF 238 +V+ L+I QV ++ I E + +G + S + S + G Sbjct: 336 EVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNSDGLLNNNGWGI 394 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + + +++ +L AL T LA P++ + A F G + Sbjct: 395 ATTITGLTAG--FYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNVGQEVPVLIS 452 Query: 299 SSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSY 351 + +T S++ GV+L P + + L I+ EVS + Sbjct: 453 TQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVF 512 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R + V + SG T+V+ GLL + +P L +P++G LFR ++ E++ + Sbjct: 513 NKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLI 572 Query: 412 IAATPFLVK 420 + P +++ Sbjct: 573 LFIKPTILR 581 >gi|262273168|ref|ZP_06050984.1| type II secretory pathway component EpsD [Grimontia hollisae CIP 101886] gi|262222746|gb|EEY74055.1| type II secretory pathway component EpsD [Grimontia hollisae CIP 101886] Length = 671 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 105/283 (37%), Gaps = 44/283 (15%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + + V+ L+I QV ++ I E+ +G Q + Sbjct: 331 ALEGVIAQLDIR-RAQVLIEAMIVEMSESDGANLGIQWGSLDGGGIQFGNTGVPITNYLA 389 Query: 240 SE-------------------------------------GGDFSVKGVLDRFSFETVLHA 262 ++ GG + + + ++ A Sbjct: 390 AQEKAKDKTTTETRFDRDNIPVEVPITESGDPTAIAEVLGGVSGLAAGVVLGDWTALVTA 449 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317 + + L+ P+L + + ASF G + T S++ +V D GV L Sbjct: 450 VSSNSDSNILSSPSLMVLDNEEASFIVGEEVPVVTGSTTGSNNDNPFQTVERKDVGVKLK 509 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + + L I+ E+S + A D+ + R+ T+V IVL+GL+ + Sbjct: 510 ITPQINEGDSVQLNIEQEISNVLGASGAVDI-RFGKRQLTTSVLAADQQMIVLSGLIDEQ 568 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +PLL IP+LG LF+++ + + + + P +++ Sbjct: 569 TNESEQKVPLLGDIPLLGHLFKSTSSGKTKRNLMLFIKPTIIR 611 >gi|296113651|ref|YP_003627589.1| type IV pilus secretin PilQ [Moraxella catarrhalis RH4] gi|295921345|gb|ADG61696.1| type IV pilus secretin PilQ [Moraxella catarrhalis RH4] gi|326566933|gb|EGE17071.1| type IV pilus secretin PilQ [Moraxella catarrhalis 12P80B1] gi|326568865|gb|EGE18935.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC8] Length = 473 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 29/299 (9%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 T + G + + + + + + T + Q AN K ++ ++I +QV ++ I Sbjct: 182 TTAVRGTLLSERGTVTVDKRTNTLIIQDVPASVAN--IKALIERIDIP-VEQVMIEARIV 238 Query: 204 EVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGG--------DFSVKGVL 251 + +++G G + G S+ + V+ GG D V + Sbjct: 239 SANENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAM 298 Query: 252 DRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 R +F + L A++ ++ P + Q+A +SG Q Y+ + S Sbjct: 299 GRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHS 358 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 GA++ + ++L TP + G+IGL++ + PV + + + +T V Sbjct: 359 -GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL---GHIAIQEDAIETNVI 414 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+ Sbjct: 415 IEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473 >gi|78064721|ref|YP_367490.1| type II and III secretion system protein [Burkholderia sp. 383] gi|77965466|gb|ABB06846.1| type II and III secretion system protein [Burkholderia sp. 383] Length = 781 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 70/348 (20%), Positives = 124/348 (35%), Gaps = 56/348 (16%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G +A + + + + Y N + V++ L+ A QV ++ I E+ Sbjct: 367 SGDDNQQGGMIQADAATNSLIITASDPVYRN--LRSVIDQLD-ARRAQVYIEALIVELAS 423 Query: 208 DILKQIGFQHSITGSS--SGPSKSFAADFGGKFV--SEGGDFSVKGVLDRFSFETVLHAL 263 + +G Q + G + + A G + + GG + G + L +L Sbjct: 424 NTQGNLGIQWQVASGQFLGGTNLNPTAGLGNSIINLTAGGVTNAAGGITGGGLAANLGSL 483 Query: 264 ERA-------------------------TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + L+ P L + + A G T Sbjct: 484 TQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIATG 543 Query: 299 S--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMP 349 S ++ + D G+ LH P + G + L++ TE S V G + P Sbjct: 544 SYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVAGTTSAQTGP 603 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R +T+ +G IVL GL++D+ Q +PLL IP +G LFR+ R +T Sbjct: 604 TFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKIRAKTN 663 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 + + P ++ S A+ NR + I G A Sbjct: 664 LMVFLRPVII---------------SDRSTAQEVTSNRYDYIQGVTGA 696 >gi|152985006|ref|YP_001347404.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] gi|150960164|gb|ABR82189.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7] Length = 658 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 21/261 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + ++ L++ QV ++ I E+ DI +G Q +I G +++ + G Sbjct: 345 NALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTRTSFGNTGLSI 403 Query: 239 VSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 + + SF ++ AL + L+ P+L + Q A Sbjct: 404 GTLLQALKDDKIPNPLPDGAVVGIGSSSFGALVTALSANSKSNLLSTPSLLTLDNQKAEI 463 Query: 288 TSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 G + T S +T + T+V D GV L TP + + L I+ E+S Sbjct: 464 LVGQNVPFNTGSYTTNSEGSSNPFTTVERKDIGVNLKVTPHINDGAALRLEIEQEISSIA 523 Query: 341 IGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 V + R +T+ +G IVL GL++DD+ Q + +PLL IP LG LF Sbjct: 524 PNVQQVSDTDIITNKRSIKSTILAENGQVIVLGGLIQDDVVQAESKVPLLGDIPWLGRLF 583 Query: 399 RNSRFNREETEIFIAATPFLV 419 R+++ + + + P +V Sbjct: 584 RSTKDTHTKRNLMVFLRPTVV 604 >gi|51597379|ref|YP_071570.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP 32953] gi|186896487|ref|YP_001873599.1| general secretion pathway protein D [Yersinia pseudotuberculosis PB1/+] gi|51590661|emb|CAH22303.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP 32953] gi|186699513|gb|ACC90142.1| general secretion pathway protein D [Yersinia pseudotuberculosis PB1/+] Length = 640 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 98/249 (39%), Gaps = 14/249 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKF 238 +V+ L+I QV ++ I E + +G + S + S + G Sbjct: 336 EVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNSDGLLNNNGWGI 394 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + + +++ +L AL T LA P++ + A F G + Sbjct: 395 ATTITGLTAG--FYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNVGQEVPVLIS 452 Query: 299 SSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSY 351 + +T S++ GV+L P + + L I+ EVS + Sbjct: 453 TQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVF 512 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R + V + SG T+V+ GLL + +P L +P++G LFR ++ E++ + Sbjct: 513 NKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLI 572 Query: 412 IAATPFLVK 420 + P +++ Sbjct: 573 LFIKPTILR 581 >gi|170731436|ref|YP_001763383.1| general secretion pathway protein D [Burkholderia cenocepacia MC0-3] gi|169814678|gb|ACA89261.1| general secretion pathway protein D [Burkholderia cenocepacia MC0-3] Length = 780 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 74/348 (21%), Positives = 121/348 (34%), Gaps = 56/348 (16%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G +A + + + + Y N + V++ L+ A QV ++ I E+ Sbjct: 366 SGDDNQPGGMIQADSATNSLIITASDPVYRN--LRSVIDQLD-ARRAQVYIEALIVELNS 422 Query: 208 DILKQIGFQHSIT------GSSSGPSKSFAADF----------------GGKFVSEGGDF 245 +G Q + G++ P GG S G Sbjct: 423 TTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSIINLTAGGVANAAGGITGGGLASNLGQL 482 Query: 246 S-------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 S + + +L + L+ P L + + A G T Sbjct: 483 SQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATG 542 Query: 299 SSSTGATSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMP 349 S S + T D G+ LH P + G + L++ TE S V G NA P Sbjct: 543 SYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTNAQTGP 602 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R +T+ +G IVL GL++D+ Q +PLL IP +G LFR+ R +T Sbjct: 603 TFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKVRAKTN 662 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 + + P ++ S A+ NR + I G A Sbjct: 663 LMVFLRPVII---------------SDRSTAQEVTANRYDYIQGVTGA 695 >gi|296159579|ref|ZP_06842403.1| type IV pilus secretin PilQ [Burkholderia sp. Ch1-1] gi|295890287|gb|EFG70081.1| type IV pilus secretin PilQ [Burkholderia sp. Ch1-1] Length = 585 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 11/238 (4%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------GKFVSEG 242 QV ++ I E + +G + S+ S++ + D F + Sbjct: 349 RPTRQVLIEARIVEGEHGFSRNLGVKLSMAASNADGTAKGLTDAAYDLSARPIAGFDAAT 408 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 ++ L ALE ++ P + A G + Y+ Sbjct: 409 AGLTLFAAGATRLLNIELSALEAQGRGEIVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQ 467 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 G + V + L P ++ GR+ L + +AG P+ + T VE+ Sbjct: 468 GVSGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGEQTDAG--PAINTKHVQTRVEV 525 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GGT+ + G+ D + +PLL KIP+LGALFR+ +E+ + TP +V+ Sbjct: 526 EDGGTVSIGGIYATDDRDDVTQVPLLGKIPVLGALFRHRAHRDRRSELAVFITPRVVQ 583 >gi|326560015|gb|EGE10410.1| type IV pilus secretin PilQ [Moraxella catarrhalis 46P47B1] Length = 473 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 29/299 (9%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 T + G + + + + + + T + Q AN K ++ ++I +QV ++ I Sbjct: 182 TTAVRGTLLSERGTVTVDKRTNTLIIQDVPASVAN--IKALIERIDIP-VEQVMIEARIV 238 Query: 204 EVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGG--------DFSVKGVL 251 + +++G G + G S+ + V+ GG D V + Sbjct: 239 SANENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAM 298 Query: 252 DRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 R +F + L A++ ++ P + Q+A +SG Q Y+ + S Sbjct: 299 GRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHS 358 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 GA++ + ++L TP + G+IGL++ + PV + + + +T V Sbjct: 359 -GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL---GHIAIQEDAIETNVI 414 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+ Sbjct: 415 IEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473 >gi|254246658|ref|ZP_04939979.1| GspD [Burkholderia cenocepacia PC184] gi|124871434|gb|EAY63150.1| GspD [Burkholderia cenocepacia PC184] Length = 775 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 70/314 (22%), Positives = 112/314 (35%), Gaps = 54/314 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------GSSSGPSKSFAADF- 234 + V++ L+ A QV ++ I E+ +G Q + G++ P Sbjct: 398 RSVIDQLD-ARRAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSII 456 Query: 235 ---------------GGKFVSEGGDFS-------VKGVLDRFSFETVLHALERATAIRTL 272 GG S G S + + +L + L Sbjct: 457 NLTAGGVANAAGGITGGGLASNLGQLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVL 516 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLS 324 + P L + + A G T S S + T D G+ LH P + Sbjct: 517 STPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITD 576 Query: 325 PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G + L++ TE S V G NA P++ R +T+ +G IVL GL++D+ Q Sbjct: 577 GGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNS 636 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +PLL IP +G LFR+ R +T + + P ++ S A+ Sbjct: 637 KVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVII---------------SDRSTAQEV 681 Query: 444 FFNRVNKIYGPKEA 457 NR + I G A Sbjct: 682 TANRYDYIQGVTGA 695 >gi|262280337|ref|ZP_06058121.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] gi|262258115|gb|EEY76849.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] Length = 717 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 104/276 (37%), Gaps = 33/276 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 +K+++LL++ QV ++ I K++G + I + S Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGVNSNNSLLVGGSDTTLWN 501 Query: 231 ------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 D G + F + L AL+ + Sbjct: 502 LREPDDKGKYTIERPDNLNVDLGVTSTGASSIAFSLISMSDFMLDLELSALQADGYGEVI 561 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGL 330 + P + Q A +G Q Y+T ++S ++ + D + L TP++ G+I + Sbjct: 562 STPKVMTADKQRARVATGQQVPYQTTTNSAAGSTATTSFKDALLSLDVTPSITPDGKIQM 621 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ G++ + +T V + +G T++L G+ + + +P L Sbjct: 622 KLDISKDSVADSAPNGEL-ILNKNQINTNVLVNNGETVILGGVFEQATSNSQTKVPFLGD 680 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +P++G LFR + ++ E+ I TP +V +R+ Sbjct: 681 LPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRN 716 >gi|254281904|ref|ZP_04956872.1| fimbrial assembly protein PilQ, putative [gamma proteobacterium NOR51-B] gi|219678107|gb|EED34456.1| fimbrial assembly protein PilQ, putative [gamma proteobacterium NOR51-B] Length = 729 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 60/303 (19%), Positives = 119/303 (39%), Gaps = 33/303 (10%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYAN-SSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G R++ ++ +++ + S + AN ++ + ++ ++I QV ++ I Sbjct: 423 EGASRSMVSARGSIKFDKRTNSIIITDTAANLAAVRDLIEKVDIPI-RQVMIEARIVIAD 481 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA--------ADFGGKFVSEGG--------------- 243 D+ +G + + G + A + ++ G Sbjct: 482 SDLNNSLGVRWGGGYLNRGSDSITSVARGLDDVATLNTQAIAGAGLSYPANPLVDLGIEE 541 Query: 244 ----DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 F++ L ALE + +++P + A+ SG + Y+ + Sbjct: 542 GGKSGFAIGFTSKDLFLTAELQALEASGQGEIVSQPKVITGDKLPATIKSGTEIPYQEGA 601 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKA 356 +S GAT+ + + L TP + GRI L + V N G +PS + Sbjct: 602 AS-GATTTQFKEAVLKLEVTPNITPDGRILLDLVINQDSVGEEVGTPNGGRIPSIDTTEL 660 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V + +G T+VL G+ + D + +P+L IP LG LF+++ + E I TP Sbjct: 661 TTQVLVGNGETVVLGGVFQSDERIDVSKVPVLGDIPYLGNLFKSTIKQSIKQETLIFITP 720 Query: 417 FLV 419 ++ Sbjct: 721 RIL 723 >gi|146339226|ref|YP_001204274.1| putative general secretion pathway protein D signal peptide [Bradyrhizobium sp. ORS278] gi|146192032|emb|CAL76037.1| Putative general secretion pathway protein D; putative signal peptide [Bradyrhizobium sp. ORS278] Length = 778 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 131/285 (45%), Gaps = 25/285 (8%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 A ++ + L + + QY S ++ + L+ + QV ++ TIAEV Q G Q Sbjct: 464 TADSVNNSLLIYASQEQY--SIVERTVRQLDRP-QRQVAIEATIAEVTLTDDLQFGVQSY 520 Query: 219 ITGSSSG--PSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--------ETVLHALERATA 268 I G P D ++ G+ + + F+F +L AL T Sbjct: 521 IMSRDLGLKPDTGSFGDAASTALATAGNVVLNRAIPGFNFLVGSATTPRLILSALHAVTD 580 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTV 322 ++ L+ P+L I Q A+ G + +T + ++T A++ G++L P + Sbjct: 581 VKVLSNPSLVVIDNQVATLQVGNEIPIQTGTATVLTGNNTVASTTDYRSTGIILRVVPRI 640 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKD 376 + G + L ++ E+S + G N G+ P+ RK ++V + SG T++LAGL+ D Sbjct: 641 NANGNVRLDVEQEISNALNGTNGGNGATNSLTPTVATRKLRSSVAVASGQTVLLAGLISD 700 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + GIP + +IP +G LF S N + TE+ I P +++ Sbjct: 701 TQNRTRNGIPGIDQIPGIGDLFSQSGNNVQRTELIIFIRPQIIRD 745 >gi|307295325|ref|ZP_07575164.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] gi|306878828|gb|EFN10047.1| type II and III secretion system protein [Sphingobium chlorophenolicum L-1] Length = 412 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 90/307 (29%), Positives = 134/307 (43%), Gaps = 26/307 (8%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA---------GEDQVTL 198 G++ S R++ L+ ++ + + + +A GE V + Sbjct: 73 EGVLSVAAPSPRSLRLTAIGAGEATVSVFGGDGGLIGREAVRVAPADAPVVRAGEQVVAV 132 Query: 199 KVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 V A V LK +GF S I G+ PS +A F +S ++ + Sbjct: 133 DVQFAAVSATTLKALGFNFSKLSGDIQGAIVSPSSLGSASFDPGGLSLEASAPIQNAFNL 192 Query: 254 F------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305 F VL AL + LA+PTL SG+ ASF +GG+ +S Sbjct: 193 FLSAPNRGIGAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEFPVPVPQASGSGNML 252 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVE 361 S+ ++GV L TP VLS I L+I EVSE + + +P R R A+TTVE Sbjct: 253 SIQYKEFGVRLSVTPFVLSKDHIVLKIAPEVSELDYANGVQLQGYVVPGLRRRSAETTVE 312 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L SG + V+AGL KE P L +P+LGA F+ + +E+ E+ I ATP LV Sbjct: 313 LGSGQSFVIAGLSYSSQTVTKEKTPFLGDLPVLGAFFKRQQNQKEKQELIIVATPRLVTA 372 Query: 422 VAMRDLS 428 V ++ Sbjct: 373 VKPEEVP 379 >gi|170023253|ref|YP_001719758.1| general secretion pathway protein D [Yersinia pseudotuberculosis YPIII] gi|169749787|gb|ACA67305.1| general secretion pathway protein D [Yersinia pseudotuberculosis YPIII] Length = 640 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 97/249 (38%), Gaps = 14/249 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKF 238 +V+ L+I QV ++ I E + +G + S + S + G Sbjct: 336 EVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNSDGLLNNNGWGI 394 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + + +++ +L AL LA P++ + A F G + Sbjct: 395 ATTITGLTAG--FYKGNWDVLLSALSTNKNNNILATPSIVTLDNMEAEFNVGQEVPVLIS 452 Query: 299 SSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSY 351 + +T S++ GV+L P + + L I+ EVS + Sbjct: 453 TQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTVNTHNLGSVF 512 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R + V + SG T+V+ GLL + +P L +P++G LFR ++ E++ + Sbjct: 513 NKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTKEKVEKSNLI 572 Query: 412 IAATPFLVK 420 + P +++ Sbjct: 573 LFIKPTILR 581 >gi|255320222|ref|ZP_05361407.1| fimbrial assembly protein PilQ [Acinetobacter radioresistens SK82] gi|255302661|gb|EET81893.1| fimbrial assembly protein PilQ [Acinetobacter radioresistens SK82] Length = 726 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 33/276 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 +++++LL++A QV ++ I D K++G + I + S Sbjct: 452 RRMIDLLDVA-VKQVMVEARIVRASTDFTKEMGVKWGILSQGITRNNSLLVGGSETTLWN 510 Query: 231 ------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 D G L F + L AL+ + Sbjct: 511 LRDPDDDGKYTIERPQNLNVDLGVTASGASRIAFGLISLSDFMLDLELSALQADGYGEVI 570 Query: 273 AEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + P + Q A SG Q Y++ + ++ D + L+ TP++ G+I + Sbjct: 571 STPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQM 630 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + P G + + + +T V + +G T+VL G+ + + + + +P+L Sbjct: 631 LLNITSDTPGNPTPTGQI-AINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGD 689 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +P +G LFR + + E+ I TP +V A + Sbjct: 690 LPGVGRLFRRDAKSNNKRELLIFVTPRIVNDSATGN 725 >gi|145300802|ref|YP_001143643.1| MSHA biogenesis protein MshL [Aeromonas salmonicida subsp. salmonicida A449] gi|88866576|gb|ABD57345.1| MshL [Aeromonas salmonicida subsp. salmonicida A449] gi|142853574|gb|ABO91895.1| MSHA biogenesis protein MshL [Aeromonas salmonicida subsp. salmonicida A449] Length = 556 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 71/288 (24%), Positives = 116/288 (40%), Gaps = 37/288 (12%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----------ITGSSSGPSK 228 + ++ ++ + QV L+ I EV + + G S ITG SS Sbjct: 261 AVREFLSQSETHLKRQVVLEARILEVALNEGYEQGVDWSGLSASWDGNKGITGGSSLSPT 320 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 F + GG K + +F ++ L+ + TL+ P +TA + Q A Sbjct: 321 QLPTTPNQIFTALGGGAGFK--ISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIK 378 Query: 289 SGGQHLYKT------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 G + T VS T +T G+ L TP + G++ L I V Sbjct: 379 VGTDEYFVTKASTTITSNSSGVSDRTPNVELTPFFSGISLDVTPQIDEEGKVLLHIHPSV 438 Query: 337 -------SEPVIGVNAG----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +G + G + +R++DT V+ +G IV+ GL+K D Q++ + Sbjct: 439 IDTEEQNKVIDMGTSGGRLELPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKV 498 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDD 432 PLL IP +G F N R + ++ E+ I P +V K +L R D Sbjct: 499 PLLGDIPWIGEAFTNRRESTKKVELVILLKPTVVEKDTWQNELKRSAD 546 >gi|134302144|ref|YP_001122113.1| type IV pilus secretin/type II and III secretion system protein [Francisella tularensis subsp. tularensis WY96-3418] gi|134049921|gb|ABO46992.1| type IV pilus secretin/type II and III secretion system protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 590 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 19/256 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+V+N ++I DQV ++ I EV R ++GF + + S + + Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390 Query: 242 GGDFS------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G + + E + ALE + +A P L + Q A Sbjct: 391 GPTPTPVDTFVGTTAKLAYTIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVAFIKD 450 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNA 345 G Y ++S A +V + + L TP + G I + I + P Sbjct: 451 GEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQG 509 Query: 346 GDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 GD+P + R+ T V G T+V+ G+ + ++ + IP L IP LG LF ++ Sbjct: 510 GDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKIT 569 Query: 405 REETEIFIAATPFLVK 420 +++E+ I TP +++ Sbjct: 570 DQDSELLIFITPKIIE 585 >gi|326575064|gb|EGE24993.1| type IV pilus secretin PilQ [Moraxella catarrhalis O35E] Length = 473 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 29/299 (9%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 T + G + + + + + + T + Q AN K ++ ++I +QV ++ I Sbjct: 182 TTAVRGTLLSERGTVTVDKRTNTLIIQDVPASVAN--IKALIERIDIP-VEQVMIEARIV 238 Query: 204 EVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGG--------DFSVKGVL 251 + +++G G + G S+ + V+ GG D V + Sbjct: 239 SANENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAM 298 Query: 252 DRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 R +F + L A++ ++ P + Q+A +SG Q Y+ + S Sbjct: 299 GRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHS 358 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 GA++ + ++L TP + G+IGL++ + PV + + + +T V Sbjct: 359 -GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL---GHIAIQEDAIETNVI 414 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+ Sbjct: 415 IEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473 >gi|237756260|ref|ZP_04584819.1| type IV pilus secretin PilQ [Sulfurihydrogenibium yellowstonense SS-5] gi|237691579|gb|EEP60628.1| type IV pilus secretin PilQ [Sulfurihydrogenibium yellowstonense SS-5] Length = 602 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 98/247 (39%), Gaps = 20/247 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKS------FAADFGG 236 Q+ ++ I +V LK +G Q ++ G S S +A DF Sbjct: 354 PYQIAIEARIVQVSTSNLKDLGIQWGGRATNIDNNNTKIITGGGSTSIISGGRYAVDFPS 413 Query: 237 KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + G F++ V + L AL+ + L++P + I G++A + G + Sbjct: 414 SSATFPGGFAIGFVFGGLQNFLDVRLSALQSIGKSKILSKPQIVTIDGETAEISQGYEVP 473 Query: 295 YKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 Y T ++ G T SV+ + L+ TP + G I + + P P + Sbjct: 474 YTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDLIITQDIPDFKNLILGNPPIQ 533 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + + V G + + G+L+ G+P L IPILG LF+ + E+ I Sbjct: 534 TKTVTSKVVAKDGSVVAIGGILEKTEDVKDSGVPGLMNIPILGYLFKEKYQQEKTNELLI 593 Query: 413 AATPFLV 419 +P +V Sbjct: 594 FLSPKIV 600 >gi|323491669|ref|ZP_08096847.1| MSHA biogenesis protein MshL [Vibrio brasiliensis LMG 20546] gi|323314031|gb|EGA67117.1| MSHA biogenesis protein MshL [Vibrio brasiliensis LMG 20546] Length = 551 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 71/334 (21%), Positives = 132/334 (39%), Gaps = 47/334 (14%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194 ++E ++ G +++ S +A ++ +++ N L ++ + Sbjct: 216 QLESAVSQLIGSGSGQSVVVSPQASVITVRAFPDE---------IREIRNFLMVSQQRMH 266 Query: 195 -QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---- 249 QV L+ I EV Q G S +S+G + + K + G ++ G Sbjct: 267 RQVILEAKILEVTLSDGYQQGINWSKAFTSNGTNYTLGQGSTIKDSTTGLPVTLPGLDAI 326 Query: 250 ----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-- 297 V+ SFE VL + + L+ P +TA + Q A G + T Sbjct: 327 GTLLGGQSNLVISSGSFEAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDSYFVTDF 386 Query: 298 ---------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ-------TEVSEPVI 341 +++T +T G+ L TP + G + L + E E Sbjct: 387 SANTDSSSSTTNTTTDIELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVTQEQKEINY 446 Query: 342 GVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 G N+ +P + +R++D+ + G +V+ GL+K + + +P L +P LG LFR Sbjct: 447 GSNSLTLPLATSSIRESDSVIRAQDGDVVVIGGLMKSNTVEQVSKVPFLGDVPALGHLFR 506 Query: 400 NSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 N+ ++TE+ I P +V ++L R D Sbjct: 507 NTSQLTQKTELVILLKPSVVGINTWQKELERSRD 540 >gi|311697132|gb|ADQ00004.1| type II and III secretion system protein [marine bacterium HP15] Length = 373 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 15/257 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV + I EV R L +G +S + + + + G F G G+ Sbjct: 92 SSQVQTDIRIVEVNRSELNTLGVYYSKLFNGGSQTIALSPPGAGGFRGFGPSAGATGITT 151 Query: 253 --------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 S ++++ALE TLAEP+L ++SGQ+A+F SGG+ VSS G Sbjct: 152 EGFNLFSFGSSSLSIINALESGGFAYTLAEPSLVSLSGQTATFLSGGEFPIP-VSSDNGE 210 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360 + ++GV L TPTV+S I L++ EVSE + +P R+R+ TTV Sbjct: 211 VEIEFKEFGVSLALTPTVVSDDEIILKVAPEVSELDFTSGVSTGGVAVPGLRIRRTQTTV 270 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G + +++GL+ + IP L +P++GA FR+ R E+ E+ + TP V Sbjct: 271 TMAPGESFIISGLVSRATTNRSDRIPGLGNLPVIGAFFRSDRVASEDKELIMVVTPKFV- 329 Query: 421 PVAMRDLSRPDDHYSVE 437 A + LSR ++ Sbjct: 330 -SAQKQLSREARNFGKA 345 >gi|15597065|ref|NP_250559.1| secretion protein XqhA [Pseudomonas aeruginosa PAO1] gi|218892174|ref|YP_002441041.1| secretion protein XqhA [Pseudomonas aeruginosa LESB58] gi|9947858|gb|AAG05257.1|AE004613_2 secretion protein XqhA [Pseudomonas aeruginosa PAO1] gi|218772400|emb|CAW28182.1| secretion protein XqhA [Pseudomonas aeruginosa LESB58] Length = 776 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 74/312 (23%), Positives = 122/312 (39%), Gaps = 38/312 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231 + ++ L++ Q+ ++ I E+ +I +G Q ++ FA Sbjct: 340 EDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLL 398 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A GK +E D ++ G+ R F ++ AL R + L+ P+L + Q A G Sbjct: 399 GALQAGKPPAELPDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVG 457 Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 ++T S +T A T+V D GV L TP + + L I+ E+S Sbjct: 458 QNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTA 517 Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 R +TV G IVL GL++DD+Q+ +PLL IP +G LFR+ Sbjct: 518 TLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRS 577 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 SR R + + + P +V+ A + R I + A+ Sbjct: 578 SRETRVKRNLMVFLRPSIVRDAAG---------------LERISHGRYRSIQLLRGAAGE 622 Query: 461 EGQNYKGAIGFI 472 + G I Sbjct: 623 PARPLFEDAGAI 634 >gi|240136813|ref|YP_002961280.1| putative General secretion pathway protein D [Methylobacterium extorquens AM1] gi|240006777|gb|ACS38003.1| putative General secretion pathway protein D [Methylobacterium extorquens AM1] Length = 792 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 74/295 (25%), Positives = 126/295 (42%), Gaps = 22/295 (7%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A E + + + + RNQY +++ L+ A QV L+ IAEV + Q G Q + Sbjct: 469 ADEANNSLVISATRNQYDKIL--RILGRLD-AMPMQVLLETVIAEVTLNNELQFGVQWFL 525 Query: 220 TGSSS-------GPSKSFAADFGGKFV----SEGGDFSVKGVLDRFSFETVLHALERATA 268 S S ++S A G + G +L+ F VL+AL+ T Sbjct: 526 KNSGSRFNLAQADTNRSVAQGTSGTDALIKAAARGVPGFNYLLNASDFNVVLNALQGVTR 585 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPT 321 + ++ P +T + ++A G Q S + + D GV+L TP Sbjct: 586 VNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVILSVTPR 645 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 V G + L I EVS+ V + + P+ R R+ T+V + G ++ + G++++ Q Sbjct: 646 VNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAINDGHSLAIGGMVQEKAQI 705 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 E +P+L +PI+G FRN R TE+ + P +++ D D Sbjct: 706 TNESVPVLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEADRIAEDFRQQ 760 >gi|254369170|ref|ZP_04985182.1| type IV pilus assembly protein [Francisella tularensis subsp. holarctica FSC022] gi|157122120|gb|EDO66260.1| type IV pilus assembly protein [Francisella tularensis subsp. holarctica FSC022] Length = 590 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 104/257 (40%), Gaps = 21/257 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+V+N ++I DQV ++ I EV R ++GF + + SG F S Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYDVVDP-SGRVNIGLYTFNSNPNSA 389 Query: 242 GGDFSVK-------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G + E + ALE + +A P L + Q A Sbjct: 390 PGPTPTPVDTFVGTTAKLAYTIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVAFIK 449 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVN 344 G Y ++S A +V + + L TP + G I + I + P Sbjct: 450 DGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQ 508 Query: 345 AGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 GD+P + R+ T V G T+V+ G+ + ++ + IP L IP LG LF ++ Sbjct: 509 GGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKI 568 Query: 404 NREETEIFIAATPFLVK 420 +++E+ I TP +++ Sbjct: 569 TDQDSELLIFITPKIIE 585 >gi|148555505|ref|YP_001263087.1| general secretion pathway protein D [Sphingomonas wittichii RW1] gi|148500695|gb|ABQ68949.1| general secretion pathway protein D [Sphingomonas wittichii RW1] Length = 682 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 28/275 (10%) Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----GSSSGPSKSF- 230 A + + ++ L++ QV ++ I E+ D +Q+ Q I +SG + SF Sbjct: 372 AAIAEVEPLIAQLDVRRP-QVLIEAAIVEISGDQAEQLAVQLGIGAAAINRASGGATSFT 430 Query: 231 -------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + G +S GG +++ +F +L A+ ++T L+ P+L Sbjct: 431 SPGLPLQSILTAIGSPAAGAVLSNGGSANIRF---GDNFSILLQAIGQSTRSNLLSTPSL 487 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 T + + A G ++T S ST T++ D G+ L P + + L Sbjct: 488 TTLDNEPAEIVVGQNVPFRTGSFSTDGNTINPFTTIERQDVGLTLRVVPRIHQGNVVRLE 547 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + EVS V R T+V G TIVL GL+ DD Q + +P+L I Sbjct: 548 VAQEVSSLTNAVTGAADLITNRRSIQTSVLADDGQTIVLGGLISDDRTQTRSQVPILGDI 607 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 PI G LFR+ + + + +F+ P +++ + Sbjct: 608 PIAGELFRSRKESHVKRTLFVFLKPTILRDREAAN 642 >gi|254240262|ref|ZP_04933584.1| secretion protein XqhA [Pseudomonas aeruginosa 2192] gi|126193640|gb|EAZ57703.1| secretion protein XqhA [Pseudomonas aeruginosa 2192] Length = 776 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 74/312 (23%), Positives = 122/312 (39%), Gaps = 38/312 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231 + ++ L++ Q+ ++ I E+ +I +G Q ++ FA Sbjct: 340 EDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLL 398 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A GK +E D ++ G+ R F ++ AL R + L+ P+L + Q A G Sbjct: 399 GALQAGKPPAELPDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVG 457 Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 ++T S +T A T+V D GV L TP + + L I+ E+S Sbjct: 458 QNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTA 517 Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 R +TV G IVL GL++DD+Q+ +PLL IP +G LFR+ Sbjct: 518 TLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRS 577 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 SR R + + + P +V+ A + R I + A+ Sbjct: 578 SRETRVKRNLMVFLRPSIVRDAAG---------------LERISHGRYRSIQLLRGAAGE 622 Query: 461 EGQNYKGAIGFI 472 + G I Sbjct: 623 PARPLFEDAGAI 634 >gi|120609611|ref|YP_969289.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1] gi|120588075|gb|ABM31515.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1] Length = 810 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 61/286 (21%), Positives = 108/286 (37%), Gaps = 42/286 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------ 223 + V++ L+ QV ++ I EV + + G Q + Sbjct: 433 RAVIDQLD-GRRAQVLVESLIVEVAANKVADFGIQWQGVMGNYGNGTIGVIGTNSTASGG 491 Query: 224 -----------SGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAI 269 SG + G +V + + + + LE Sbjct: 492 ANILNLALAAASGSVSGVTSALSASGARPGNGLNVAIAPRINGNYYLGALANFLENTGDA 551 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPT 321 L+ P L + + A G + T S + T+V D G++L P Sbjct: 552 NVLSTPNLLTLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVGLMLRVRPQ 611 Query: 322 VLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + G + L + EVS+ G NA + P+ R ++TV + G IVL GLL+D Sbjct: 612 ISENGTVKLSLYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGSVIVLGGLLEDRYSM 671 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++ +PL+ +P++G LFRN R++T + + P +++ A D Sbjct: 672 GQDKVPLMGDLPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSD 717 >gi|317051459|ref|YP_004112575.1| general secretion pathway protein D [Desulfurispirillum indicum S5] gi|316946543|gb|ADU66019.1| general secretion pathway protein D [Desulfurispirillum indicum S5] Length = 638 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 71/324 (21%), Positives = 125/324 (38%), Gaps = 30/324 (9%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 D + L+ + + S +A E + ++ A Sbjct: 276 ADATKMAELLKGLVEGRTASASGSGRD---SAPAPAEKFSIQADESLNALVIRAEPATMA 332 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFG 235 + ++ L++ QV ++ I EV D L Q+G Q + G + GP + Sbjct: 333 --EIQSIIAQLDVR-RAQVLIEAVIVEVVGDSLNQLGVQLAARSAGDTLGPIGGTSFSNA 389 Query: 236 GK---------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G +S+G V +L AL T L+ P++ + Sbjct: 390 GTSLSNILTSIATQTPPTISDGMSLGVATTSGSVEMGALLTALASVTNANLLSTPSILTL 449 Query: 281 SGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 Q AS G +T S + T++ D G+VL TP++ + ++++ E Sbjct: 450 DNQEASILVGQNIPVRTGTYSHDSGTNPFTTIQRQDVGIVLKTTPSIYEGNSVRMQVELE 509 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S + D R+ TT+ + TIVL GL+KDD+Q++ +PLL IP+LG Sbjct: 510 ASSVL--TEGTDGIITNKREIITTILADNNETIVLGGLIKDDVQEVVSKVPLLGDIPLLG 567 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF+ R E+ + + P ++ Sbjct: 568 RLFQARRQRVEKRNLLVFLRPTIL 591 >gi|187931580|ref|YP_001891564.1| type IV pili secretin component [Francisella tularensis subsp. mediasiatica FSC147] gi|187712489|gb|ACD30786.1| type IV pili secretin component [Francisella tularensis subsp. mediasiatica FSC147] Length = 590 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 19/256 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+V+N ++I DQV ++ I EV R ++GF + + S + + Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390 Query: 242 GGDFS------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G + + E + ALE + +A P L + Q A Sbjct: 391 GPTPTPVDTFVGTTAKLAYTIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVAFIKD 450 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNA 345 G Y ++S A +V + + L TP + G I + I + P Sbjct: 451 GEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQG 509 Query: 346 GDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 GD+P + R+ T V G T+V+ G+ + ++ + IP L IP LG LF ++ Sbjct: 510 GDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKIT 569 Query: 405 REETEIFIAATPFLVK 420 +++E+ I TP +++ Sbjct: 570 DQDSELLIFITPKIIE 585 >gi|254251012|ref|ZP_04944330.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] gi|124893621|gb|EAY67501.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] Length = 780 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 112/314 (35%), Gaps = 54/314 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFA 231 + V++ L+ A QV ++ I E+ +G Q + +SG S Sbjct: 397 RAVIDQLD-ARRAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPTSGLGNSII 455 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFS-------------------FETVLHALERATAIRTL 272 G + G + G+ +L + L Sbjct: 456 NLTAGGTTTSAGGVTGGGLAANLGTLTQGLNVGWLHNMFGVQGLGALLQYFSGVSDANVL 515 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLS 324 + P L + + A G L T S S + T D G+ LH P + Sbjct: 516 STPNLITLDNEEAKIVVGQNVLIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITD 575 Query: 325 PGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G + L++ TE S V + P++ R +T+ +G IVL GL++D+ Q Sbjct: 576 GGILKLQLYTEDSAVVPSTTSSQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNS 635 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +PLL IP +G LFR+ R++T + + P ++ D + A+ Sbjct: 636 KVPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII-----------TDR----NVAQEV 680 Query: 444 FFNRVNKIYGPKEA 457 NR + I G A Sbjct: 681 TANRYDYIQGVTGA 694 >gi|89256170|ref|YP_513532.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. holarctica LVS] gi|115314642|ref|YP_763365.1| type IV pilus assembly protein [Francisella tularensis subsp. holarctica OSU18] gi|156502212|ref|YP_001428277.1| type IV pilus secretin [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010550|ref|ZP_02275481.1| type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. holarctica FSC200] gi|290954188|ref|ZP_06558809.1| type IV pilus secretin [Francisella tularensis subsp. holarctica URFT1] gi|295312388|ref|ZP_06803168.1| type IV pilus secretin [Francisella tularensis subsp. holarctica URFT1] gi|89144001|emb|CAJ79239.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. holarctica LVS] gi|115129541|gb|ABI82728.1| type IV pilus assembly protein [Francisella tularensis subsp. holarctica OSU18] gi|156252815|gb|ABU61321.1| type IV pilus secretin [Francisella tularensis subsp. holarctica FTNF002-00] Length = 590 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 21/257 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------GPSK 228 K+V+N ++I DQV ++ I EV R ++GF + + SS P+ Sbjct: 332 KEVVNDIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSSRVNIGLYTFNSNPNPAP 390 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 FV + + E + ALE + +A P L + Q A Sbjct: 391 GPTPTPVDTFVGTTAKLAYT-IAGGVRLEMEVRALESESLAEEVASPHLVVANNQVAFIK 449 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVN 344 G Y ++S A +V + + L TP + G I + I + P Sbjct: 450 DGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQ 508 Query: 345 AGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 GD+P + R+ T V G T+V+ G+ + ++ + IP L IP LG LF ++ Sbjct: 509 GGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKI 568 Query: 404 NREETEIFIAATPFLVK 420 +++E+ I TP +++ Sbjct: 569 TDQDSELLIFITPKIIE 585 >gi|226946542|ref|YP_002801615.1| secretion system protein [Azotobacter vinelandii DJ] gi|226721469|gb|ACO80640.1| Bacterial secretion system protein [Azotobacter vinelandii DJ] Length = 717 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 55/338 (16%), Positives = 125/338 (36%), Gaps = 35/338 (10%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 ++A L L + + + +V V + S E + ++ +++ Sbjct: 380 AELAPLRRELLQVNYAKATDIAKLFQSVTSSDEVEEQRGSITVDERTNNIIAYQTQDRLD 439 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAA 232 ++++ L++ QV ++ I E D K +G + + S G + + Sbjct: 440 --ELRRIVAQLDVP-VRQVMIEARIVEANVDYDKSLGVRWGGSFVNDQWSLYGKDGAQSV 496 Query: 233 DFGGKFVSEGG--------------------------DFSVKGVLDRFSFETVLHALERA 266 D G F+ G + + D + L A+E+ Sbjct: 497 DDGQVFLPGTGQVGNFTLEDGMAPVPFVDMGVANSTSGLGIGFISDHLILDLQLSAMEKT 556 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +++P + ++A +G + Y+ SSS ++ + + + L TP + Sbjct: 557 GNGEVISQPKVLTSDKETAKILTGEEIPYQEASSSGATST-SFKEAALSLEVTPQITPDN 615 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 RI + ++ + +P + + V + G TIV+ G+ + + + +P Sbjct: 616 RIIMEVKVTKDQADFAKALNGVPPINKNEVNAKVLIGDGETIVIGGVFSNIQAKSVDKVP 675 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 L +P +G LFR ++E+ + TP ++ A+ Sbjct: 676 FLGDLPFIGRLFRRDVVADSKSELLVFLTPRILNSQAI 713 >gi|207725091|ref|YP_002255488.1| gspd-related protein [Ralstonia solanacearum MolK2] gi|206590321|emb|CAQ37282.1| gspd-related protein [Ralstonia solanacearum MolK2] Length = 754 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 85/410 (20%), Positives = 149/410 (36%), Gaps = 55/410 (13%) Query: 53 GLNKVIILQVPVDVQ-DVLVSDPTKADVV------------VHSPRTMYLFGKNVGQANV 99 GLN V V D + V + + T A VV V + ++ Sbjct: 206 GLNFVFDKDVRTDQKVTVFLRNSTVASVVNTVLLTNQLEQRVLDGNAILIYPNTP----- 260 Query: 100 ILIGHDGKQMLNLD-ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 D + + +L D + TL+ + +I V+ + +V+ IQ ++ Sbjct: 261 -AKQRDYQPLTVRTFVLSNSDAKDVANTLKTILKTRDIVVDEKRNMIVMRDTPDAIQAAE 319 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + V + E E +V L+V I EV+R L+ +G Q Sbjct: 320 KLVAVHEM-------------------------PEPEVMLEVEILEVKRSRLQDLGIQLP 354 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S + + S + + + + ++ T LA P + Sbjct: 355 SQLSLTPLASSSGGTLTLDDLRHLNPTRIGATVSPLN----VNVNAAVTDTNVLANPRVR 410 Query: 279 AISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + + A G + T +S+ A +V D G+ L PTV + +RI E Sbjct: 411 TRNKEKARIQVGQRVPNVTTTSTATGFVAENVQYVDVGLKLEVEPTVTPDNEVTIRINLE 470 Query: 336 VSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 VS+ + V R A T + L G +LAGL++D+ + +P L IP Sbjct: 471 VSDIISQVQTKSGSIAYEIGTRNATTLLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIP 530 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 LG LF N+ ++EI ++ TP +++P +L + E + Sbjct: 531 ALGRLFGAQSDNKLKSEIVLSITPRVIRPAQRPNLGSAEFDSGTESSLRL 580 >gi|170739479|ref|YP_001768134.1| general secretion pathway protein D [Methylobacterium sp. 4-46] gi|168193753|gb|ACA15700.1| general secretion pathway protein D [Methylobacterium sp. 4-46] Length = 797 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 72/307 (23%), Positives = 125/307 (40%), Gaps = 21/307 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205 G V + + + + S + +K++ +L A QV L+ IAEV Sbjct: 457 SGAVYGSGARRGGIGIVADETNNSLVISATRTQYEKILRILGRLDARPTQVLLETVIAEV 516 Query: 206 RRDILKQIGFQH---------SITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRF 254 + + G Q ++ S + S + G VS G +L+ Sbjct: 517 TLNDKLEFGVQWFLKNGGSRFNLAQSDTAASVASGTSGAGALVSAAMRGVPGFNYLLNDA 576 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSV 307 F VL+AL T + L+ P +T + ++A G Q S + + Sbjct: 577 DFHVVLNALRGVTRVNVLSSPNITVLDNRTARLQIGDQVPIVKQSGQSALAGNAPILNQI 636 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGG 366 D GV+L TP V G + L I EVS+ V + + P+ R R+ T+V + G Sbjct: 637 ELKDTGVILSVTPRVNKNGLVVLDINQEVSDVVPTTTSNINSPTIRQRRVATSVAVSDGH 696 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++ + G++++ Q E +P+L +P++G FRN R TE+ + P +++ A D Sbjct: 697 SLAIGGMVQEKAQIGTEALPVLGDLPVIGPAFRNKSDLRVRTELIVFLRPKVIRGTADAD 756 Query: 427 LSRPDDH 433 D Sbjct: 757 RIASDFR 763 >gi|82778251|ref|YP_404600.1| putative type II secretion protein [Shigella dysenteriae Sd197] gi|81242399|gb|ABB63109.1| putative type II secretion protein [Shigella dysenteriae Sd197] Length = 611 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 241 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 299 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 300 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 359 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 360 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 419 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 420 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 479 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 480 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 537 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 538 KRNLMVFIRPTILRDGMAAD 557 >gi|260771969|ref|ZP_05880886.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio metschnikovii CIP 69.14] gi|260612836|gb|EEX38038.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio metschnikovii CIP 69.14] Length = 663 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 110/288 (38%), Gaps = 46/288 (15%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGP--------- 226 V++ L+I QV ++ I E+ +G Q I +SG Sbjct: 322 DVISQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLKDGAVIQYGNSGAQVGQVMVGL 380 Query: 227 -----------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + + D+ + G + + ++ A+ Sbjct: 381 EQAKDTTESRAVYDRDGNFLRNETTTKKGDYSTLASALSGVNGAALGVMMGDWTALISAV 440 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHF 318 ++ L+ P++T + ASF G + T S++ +V + G+ L Sbjct: 441 SSTSSTNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSNNDNPFQTVERKEVGIKLKV 500 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + + L I+ EVS + A D+ + R+ +TTV + G +VL GL+ + Sbjct: 501 VPQINEGDSVQLSIEQEVSNVLGAQGAVDV-RFAKRQLNTTVMVQDGQMLVLGGLIDERT 559 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + +P+L IP+LG LFR++ E+ + + P +++ D Sbjct: 560 AESESKVPILGDIPLLGYLFRSTNTTVEKKNLMVFIKPTIIRDGMTAD 607 >gi|326318805|ref|YP_004236477.1| general secretion pathway protein D [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375641|gb|ADX47910.1| general secretion pathway protein D [Acidovorax avenae subsp. avenae ATCC 19860] Length = 823 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 67/257 (26%), Positives = 117/257 (45%), Gaps = 21/257 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGS---SSGPSKSFAADFGGKFVSEGGD----- 244 QV ++ +I EV D Q G Q + + S + + + G S G Sbjct: 530 PTQVLIEASIVEVTLDDSLQYGLQWAFSNSGPSNLNGAGQLLTNAPGSNSSIGASIPTPT 589 Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299 FS + VL+AL ++ ++ P+L + +A + G Q KT + Sbjct: 590 TSGFSYALSNSLGNVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTGTLT 649 Query: 300 -----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYR 352 ++ A ++ D GV L TP+V + + ++I V++ V + P ++ Sbjct: 650 SAISGGTSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGNVSLQPVFQ 709 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ + V + SG IVL GL++D K GIPLL IP++G+LF N+ TE+ + Sbjct: 710 QRQITSKVAVRSGEAIVLGGLIRDTNNSSKSGIPLLQDIPVVGSLFSNNGKTGTRTELLV 769 Query: 413 AATPFLVK-PVAMRDLS 428 TP +V+ + +R++S Sbjct: 770 VITPKVVRTDIDIREVS 786 >gi|160901128|ref|YP_001566710.1| general secretion pathway protein D [Delftia acidovorans SPH-1] gi|160366712|gb|ABX38325.1| general secretion pathway protein D [Delftia acidovorans SPH-1] Length = 787 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 62/283 (21%), Positives = 113/283 (39%), Gaps = 39/283 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGK 237 + V++ L+ QV ++ I E++ + L Q G Q S G G + ++ G Sbjct: 424 RAVIDKLD-GRRAQVLIESLIVELKDNRLAQFGVQWQAILSNNGKVLGSIGNNSSVAGAN 482 Query: 238 FVSEGGDFSVKGVLD-------------------------RFSFETVLHALERATAIRTL 272 +S F+ G ++ + + + L+ + L Sbjct: 483 ILSLLSAFNKDGSINASGITGDTVNSMRGTNLGFTQSVNGNTTLGFLANFLQNSGDANIL 542 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTVLS 324 + P L + + A G T S ++ +T +V D G++L P + Sbjct: 543 STPNLMTLDNEEARIIVGQNVPMVTGSYASNSTGGTVNPFTTVERKDVGLMLRVRPQINE 602 Query: 325 PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G + L + EVS + + R ++ V + G IVL GL+ D+ Q ++ Sbjct: 603 NGTVKLAVFQEVSSVDESTRKDTNGLTTNKRSIESNVLVEDGNIIVLGGLIDDNYSQAED 662 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IPLL IP+LG LFRN+ R +T + + P +++ A + Sbjct: 663 RIPLLGDIPVLGNLFRNTNRKRNKTNLMVFLRPVVMRDAAATN 705 >gi|308051183|ref|YP_003914749.1| pilus (MSHA type) biogenesis protein MshL [Ferrimonas balearica DSM 9799] gi|307633373|gb|ADN77675.1| pilus (MSHA type) biogenesis protein MshL [Ferrimonas balearica DSM 9799] Length = 551 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 77/310 (24%), Positives = 124/310 (40%), Gaps = 27/310 (8%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 D ++ + L + L + + + E QV L+ I EV Q G Sbjct: 242 DGRQVLTLPQAGLVSVKAYPHELREVESFLGQAQQNLERQVVLEARILEVVLSDGYQQGI 301 Query: 216 QHS-ITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 S +TGS SF G V++ F V+ L+ + TL Sbjct: 302 NWSEVTGSIGSTDISFGTSEGQFSNAVTDVIGGITGISFTGTDFSAVVTLLDTQGDVDTL 361 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDY-------GVVLHFTPTV 322 + P +TAI+ Q A G + T S+T T +TT D G+ L TP + Sbjct: 362 SSPRVTAINNQKAVIKVGTDEYFVTDISATTVASDTPITTPDVELTPFFSGIALDVTPQI 421 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGL 373 G + L + V++ + ++R++DT + SG +V+ GL Sbjct: 422 GQSGEVLLHVHPSVTDITEQTKTITALDTTLELPLAQSQIRESDTMIRAHSGDVVVIGGL 481 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRP-- 430 +K +Q++ +PLL +IP LG LF N +TE+ I P +V+P + L R Sbjct: 482 MKTLQEQVESKVPLLGQIPFLGELFTNRSQRNVKTELVILLRPTIVEPGTWQKQLQRSQQ 541 Query: 431 --DDHYSVED 438 DD Y ++ Sbjct: 542 TLDDWYPSQN 551 >gi|37681131|ref|NP_935740.1| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016] gi|37199882|dbj|BAC95711.1| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016] Length = 547 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 69/280 (24%), Positives = 109/280 (38%), Gaps = 29/280 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + + + QV L+ I EV Q G S +S G S S + G V Sbjct: 258 RQFLGISQERMQRQVILEAKILEVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLP 317 Query: 242 GGD-------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G D + SFE VL + + L+ P +TA + Q A G Sbjct: 318 GLDAIGSLLGGQTNVTISDGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQY 377 Query: 295 YKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341 Y T SS ++T G+ L TP + G + L + EV E Sbjct: 378 YVTALSSNVGNDDKSKAVPEVTLTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETK 437 Query: 342 GVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 +N G + +R++D+ + G +V+ GL+K + + +P IP Sbjct: 438 QLNLGGDFQNVTLPLAKSSIRESDSVIRARDGDVVVIGGLMKSNTIERVSKVPFFGDIPA 497 Query: 394 LGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 LG LFRN+ ++TE+ I P +V ++L R D Sbjct: 498 LGHLFRNTSNLTQKTELVILLKPTVVGVNTWQKELERSRD 537 >gi|325275690|ref|ZP_08141579.1| general secretion pathway protein D [Pseudomonas sp. TJI-51] gi|324099176|gb|EGB97133.1| general secretion pathway protein D [Pseudomonas sp. TJI-51] Length = 613 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 121/288 (42%), Gaps = 21/288 (7%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S ++++ L+ QV + I EV I + +G Q + +F+ G Sbjct: 318 GSVEQIIQQLDQP-RAQVLIHAAIVEVSGSIDEALGVQWGVGTGGLNGGVTFSESGTGLA 376 Query: 239 VSEGGDFSVKG----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G + + G + F ++ AL ++ L+ P+L + Q A G Sbjct: 377 DLLGKEAKLPGGAALAIGTDRFAALISALASSSRSNLLSTPSLLTLDNQEAHILVGQNVA 436 Query: 295 YKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 +KT S T T+V D G+ L P + + L ++ E SE D Sbjct: 437 FKTGSYVTPGSGSENPFTTVERKDIGISLKVRPHINEGQSLRLEVEQESSEIAPSTAEND 496 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + R +T+ G IV+ GL+KD ++Q++ G+PLLS+IP LG LFR +E+ Sbjct: 497 LIT-NKRTLKSTILASDGEIIVIGGLIKDSMRQVERGVPLLSRIPWLGGLFRWRSDIQEK 555 Query: 408 TEIFIAATPFLVKPVAMR--------DLSRPDDHYSVEDDAKAFFFNR 447 T + + P +++ A R D R D + DA+ F R Sbjct: 556 TNLMVFLRPTILRSQAERVEVGRRAYDGVRAADDSPLPADAQRLFEPR 603 >gi|170740267|ref|YP_001768922.1| general secretion pathway protein D [Methylobacterium sp. 4-46] gi|168194541|gb|ACA16488.1| general secretion pathway protein D [Methylobacterium sp. 4-46] Length = 779 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 68/260 (26%), Positives = 125/260 (48%), Gaps = 19/260 (7%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 A QV + VTIAEV+ + + G Q + S G ++ G + G +V Sbjct: 503 AVPAQVAVNVTIAEVKLNDELKHGVQFFLDSRSLGLGRN-KGSVGLVSAAASGASNVLKP 561 Query: 251 LDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + F+F + V++AL+ T ++ L+ P+L + Q A+ G T + + Sbjct: 562 GNGFNFLVGGYSGPDVVINALDGFTDVKVLSSPSLVVLENQPATLQVGDSVPITTRQAQS 621 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 V D G++L+ P + + ++I+ E+S V G + P+ R+ Sbjct: 622 VDFANAPLINQVEFRDTGIILNVIPRIGQNDAVTMQIEQEISAVVGGSDTLT-PTISKRR 680 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +T+ + +G T++LAGL+ D Q+ ++GIP+L ++P +GALF ++ E TE+ + Sbjct: 681 VASTISVANGQTVLLAGLISDKHQRERDGIPILGRLPQIGALFSSTNNADERTELVVFIR 740 Query: 416 PFLVKPVAMRDLSRPDDHYS 435 P +V+ + RD R + Y Sbjct: 741 PVVVR--SGRDAQRVAEDYR 758 >gi|262380438|ref|ZP_06073592.1| general secretion pathway protein D [Acinetobacter radioresistens SH164] gi|262297884|gb|EEY85799.1| general secretion pathway protein D [Acinetobacter radioresistens SH164] Length = 718 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 33/276 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 +++++LL++A QV ++ I D K++G + I + S Sbjct: 444 RRMIDLLDVA-VKQVMVEARIVRASTDFTKEMGVKWGILSQGITRNNSLLVGGSETTLWN 502 Query: 231 ------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 D G L F + L AL+ + Sbjct: 503 LRDPDDEGKYTIERPQNLNVDLGVTAPGASRIAFGLISLSDFMLDLELSALQADGYGEVI 562 Query: 273 AEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + P + Q A SG Q Y++ + ++ D + L+ TP++ G+I + Sbjct: 563 STPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQM 622 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + P G + + + +T V + +G T+VL G+ + + + + +P+L Sbjct: 623 LLNITSDTPGNPTPTGQI-AINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGD 681 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +P +G LFR + + E+ I TP +V A + Sbjct: 682 LPGVGRLFRRDAKSDNKRELLIFVTPRIVNDSATGN 717 >gi|78049214|ref|YP_365389.1| type II secretory pathway component [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037644|emb|CAJ25389.1| type II secretory pathway component [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 759 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 78/313 (24%), Positives = 131/313 (41%), Gaps = 33/313 (10%) Query: 148 HGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 +G V + + ++ET + A SS + V+ L++ QV ++ IAEV Sbjct: 431 NGSVTLEVEGDKVGVSAVAETNTLLVRSSAQAWSSIRDVIERLDVM-PMQVHIEAQIAEV 489 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRF--- 254 + G + + P + G + G G + G+ F Sbjct: 490 TLTGQLEYGVNWYFENAVNAPVNADGTGGAGLPSAAGRGIWGDVSGSVTNNGLAWTFLGK 549 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVT 308 + ++ AL+R T +R L P++ + A+ G + + S +TG +SV Sbjct: 550 NAAAIISALDRVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQ 609 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGVNAGDMPSYRVRKA 356 D GV+L P V G + L I EVS P +A R+ Sbjct: 610 YIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTSASTTTVNSAACNVDINTRRV 669 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + +G TI+LAGL+ D G+P+LSK+P++GALF N++ E+ + TP Sbjct: 670 KTEAAVQNGDTIMLAGLIDDSTSDGSAGLPILSKLPVVGALFGRKTQNKDRREVIVLITP 729 Query: 417 FLVK-PVAMRDLS 428 +V+ P R+L+ Sbjct: 730 SIVRNPQEARNLT 742 >gi|289663703|ref|ZP_06485284.1| general secretion pathway protein D [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 768 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 80/331 (24%), Positives = 134/331 (40%), Gaps = 48/331 (14%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + + +++ D V + AV + T L +S + SS + V+ L++ Sbjct: 432 GNGAVTLDVSGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 478 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFG---- 235 QV ++ +AEV G + G+ G A+ G Sbjct: 479 -PMQVHIEAQVAEVNLTGDLSYGVNWYFENSVNAAADSATNGTGIGVGAGLASAAGRNIW 537 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G + G+ + + +++AL++ T +R L P++ + A+ G + Sbjct: 538 GDIAGKVGEGGLAWSFLGKNAAAIINALDKVTNVRLLQTPSVFVRNNAEATLNVGSRIAI 597 Query: 296 KTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---------- 339 + S +TG +SV D GV+L P V G + L I EVS P Sbjct: 598 NSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSPGDRPTACQSA 657 Query: 340 VIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 +NA R+ T + SG TI+LAGL+ D G+P LSK+P++GALF Sbjct: 658 TATINAAACNVDINTRRVKTEAAVQSGDTIMLAGLINDSTTDGSNGVPFLSKLPVVGALF 717 Query: 399 RNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 N E+ + TP +V+ P R+L+ Sbjct: 718 GTKSRNSSRREVIVLITPSIVRNPQEARNLT 748 >gi|28199566|ref|NP_779880.1| fimbrial assembly protein [Xylella fastidiosa Temecula1] gi|182682302|ref|YP_001830462.1| type IV pilus secretin PilQ [Xylella fastidiosa M23] gi|28057681|gb|AAO29529.1| fimbrial assembly protein [Xylella fastidiosa Temecula1] gi|182632412|gb|ACB93188.1| type IV pilus secretin PilQ [Xylella fastidiosa M23] Length = 636 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 105/258 (40%), Gaps = 28/258 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------TGSSSGPSKSFAA 232 DQV ++ I + +G + + GSS+ ++ Sbjct: 370 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTAGSSTSATRGLNV 429 Query: 233 DFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 D GG + + + +F+ + L AL++ + ++ P + + + Sbjct: 430 DLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIKQ 489 Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIG 342 G + Y T++ +V + + L TPT+ + R+ L + E+ + + Sbjct: 490 GKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITI 549 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+ Sbjct: 550 ANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRG 609 Query: 403 FNREETEIFIAATPFLVK 420 ++++ E+ I TP +++ Sbjct: 610 KDKQKAELLIFVTPKVLR 627 >gi|313672368|ref|YP_004050479.1| type ii and iii secretion system protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939124|gb|ADR18316.1| type II and III secretion system protein [Calditerrivibrio nitroreducens DSM 19672] Length = 425 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 90/420 (21%), Positives = 172/420 (40%), Gaps = 72/420 (17%) Query: 54 LNKVIILQVP-VDVQDVLVSDPTKADVVVHSPRTMYLFGKNV-GQ-----ANVILIGHDG 106 LN+++ L + DV+DV + + T + GK V G+ NV L+ Sbjct: 21 LNRLVSLNMKNADVKDVF-------NALSLISNTNIVVGKGVEGKISVFLDNVTLMDAIK 73 Query: 107 KQMLNLDI--LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI------QDSQ 158 N D+ +E +I ++ +++ + + + V + Sbjct: 74 SVTSNADLNYRVENNIVYIT------------KLDNIGQSTITSDNVESYFFKPKYMKLD 121 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--------------EDQVTLKVTIAE 204 + + FLS +G ++S+ ++ A Q+ ++ I Sbjct: 122 QFEGIINNFLSSTGGKMVIDNSTGTIIITDTKANLKYLKDLIAKIDQPSQQIMIEAKIVR 181 Query: 205 VRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 ++ K +G Q + G+ + P++++ + V+ G + G Sbjct: 182 TTKNAGKDLGIQWGVNVNDRTSKNFPYSVQVGAGADPNRNYIVNLPISDVARAGIGAGVG 241 Query: 250 VL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 V + F L+ALE + + P + ++ Q A SG + ++ +ST Sbjct: 242 VTLGNFNNTFVLNAKLNALETKGEAKVVHSPKILTMNNQKAKLESGEEIRFRETKTSTTT 301 Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + + VL TP +L+ G I L + E+SE + ++P+ KA+T V Sbjct: 302 TTQEIEIQKDEAKTVLDITPQILNDGNILLNLAVELSEFDWTKSVDNIPAKNKNKAETQV 361 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G T+++ GL K+++ + + +PLLSKIP+LGALFRN E E+ I TP +++ Sbjct: 362 ILKDGETLIIGGLKKENVFKNEAAVPLLSKIPLLGALFRNKSSGEELNELLIFVTPKIMR 421 >gi|121593092|ref|YP_984988.1| general secretion pathway protein D [Acidovorax sp. JS42] gi|120605172|gb|ABM40912.1| general secretion pathway protein D [Acidovorax sp. JS42] Length = 781 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 108/284 (38%), Gaps = 35/284 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ QV ++ I EV + + G Q + G + + Sbjct: 423 RAVIDKLD-GRRAQVLIESLIVEVSASKVAEFGIQWQGVLGNYGSTLGVLGNNSSVAGRN 481 Query: 242 GGDFSVKGVLDRFS------------------------FETVLHALERATAIRTLAEPTL 277 D ++ + + + LE L+ P L Sbjct: 482 ILDLALAAATGNVTSIANAKPAAGMNLAVAPRINGKYYLGALANFLENTGDANVLSTPNL 541 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRI 328 + + A G + T S + T+V D G++L P + G + Sbjct: 542 LTLDNEEAQIIIGNNVPFVTGSYANTGGSGGAVNPFTTVERKDVGLMLRVRPQINENGTV 601 Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L + EVS+ + + PS R ++TV + G IV+ GLL+D+ ++ +P+ Sbjct: 602 KLTMYQEVSKVAESTLSNANGPSTSKRSIESTVLVDDGSVIVIGGLLEDNYALGQDKVPV 661 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 + +P++G LFRN + R++T + + P +++ A D D Sbjct: 662 MGDLPVVGGLFRNEKRTRQKTNLMVFLRPMVIRDSATSDALMVD 705 >gi|332527680|ref|ZP_08403723.1| general secretion pathway protein D [Rubrivivax benzoatilyticus JA2] gi|332112080|gb|EGJ12056.1| general secretion pathway protein D [Rubrivivax benzoatilyticus JA2] Length = 388 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 117/313 (37%), Gaps = 50/313 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPS------ 227 + ++ L+ QV ++ I EV D + GFQ TG G + Sbjct: 42 RTMIEQLDSR-RAQVYIESLIVEVAGDNAAEFGFQWQGLIGKDGDKTGLFGGTNFSNNNG 100 Query: 228 -------KSFAADFGGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTL 277 + AA VS G +V + ++ + + L+ T ++ P L Sbjct: 101 SGNILNITTAAASGSASGVSLGEGLNVGILRRYGGTYALGALANLLQSQTKTNIVSTPNL 160 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGL 330 + + A G + T + T ++ D G+ L P + G + + Sbjct: 161 ITLDNEEAKIVVGENVPFITGQYTNTGTATTSPFQTIERKDVGITLRIRPQIGESGTVRM 220 Query: 331 RIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I E S + G PS R ++ V + G IVL GL++D + K +PL Sbjct: 221 TIYQEQSSVLSTATVGTTNAGPSTTKRSIESQVVVEDGQIIVLGGLVQDSYVEEKSKVPL 280 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L IP LGALFR+ ++ T + + +PV MRD D +R Sbjct: 281 LGDIPGLGALFRSESRTKKRTNLMVFL-----RPVVMRD----------ADSTVRLSLDR 325 Query: 448 VNKIYGPKEASEV 460 ++I +E ++ Sbjct: 326 YDQIRARQEGAQP 338 >gi|123443548|ref|YP_001007521.1| general secretion pathway protein D [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090509|emb|CAL13378.1| general secretion pathway protein D [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 648 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 99/253 (39%), Gaps = 12/253 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGK 237 +V+ L++ QV ++ I E + +G Q + S + Sbjct: 340 DQVIERLDVR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGANFLQKPNSIQTNNNSG 398 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + +++ + AL + LA P++ + A F G + T Sbjct: 399 NPIPMMIAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 458 Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PS 350 + +T S++ GV+L P + + L I+ EVS + Sbjct: 459 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSV 518 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+V+ GLL I ++ +PLL IP +G LFR S+ E++ + Sbjct: 519 FNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQSKEKIEKSNL 578 Query: 411 FIAATPFLVKPVA 423 + P +++ + Sbjct: 579 ILFIRPTILRETS 591 >gi|218782965|ref|YP_002434283.1| general secretion pathway protein D [Desulfatibacillum alkenivorans AK-01] gi|218764349|gb|ACL06815.1| General secretion pathway protein D [Desulfatibacillum alkenivorans AK-01] Length = 716 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 68/349 (19%), Positives = 132/349 (37%), Gaps = 43/349 (12%) Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR-TIQDSQRAVELSETFLSQSG 172 + ++ A + + + + + ++ V+ V+ + + ++ + Sbjct: 325 VYLQNATAEEVVKVLQALPGKQTDTKNKAEAPVVSKDVQISADKATNSIIIVA------- 377 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--- 229 ++ K V+ L+I V ++ I EV D ++G + + + Sbjct: 378 -DKEDFKVLKDVIEKLDIP-RSMVYIEALIMEVSTDKAFELGVEWRLGDNFEVNGDQAVG 435 Query: 230 -----------------FAADFGGKFVSEGGDFSVK--------GVLDRFSFETVLHALE 264 A+ FS+ G + + V+ A + Sbjct: 436 WAGSGGAGSEGAYTLFPTTAEIASGVAGFPTAFSMGVIGENIKIGDIYFPTLGAVMRAYK 495 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTP 320 + + L+ P + A + + + G Y T SSS TS D GV L TP Sbjct: 496 NDSDVHILSAPHILATNNEESEIYVGKNVPYVTRQDTSSSSVDYTSYEYRDVGVTLKITP 555 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + L + EV+ + P+ RKADTTV + G TIV+ GL+ + + Sbjct: 556 QISQERLVRLDVFQEVTRLIETAGTTTQPTTYKRKADTTVIVKDGNTIVIGGLIDESTEG 615 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 +P L IP LG FR+ RE+T +++ TP +++ P +++S Sbjct: 616 GTYKVPCLGDIPWLGWAFRSKTEKREKTNLYVFLTPRIIQTPTEAKEIS 664 >gi|47155035|emb|CAE85234.1| GspD, hypothetical type II secretion protein [Escherichia coli] Length = 616 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 246 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562 >gi|326562497|gb|EGE12814.1| type IV pilus secretin PilQ [Moraxella catarrhalis 103P14B1] gi|326572679|gb|EGE22668.1| type IV pilus secretin PilQ [Moraxella catarrhalis CO72] gi|326574278|gb|EGE24226.1| type IV pilus secretin PilQ [Moraxella catarrhalis 101P30B1] Length = 473 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 29/299 (9%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 T + G + + + + + + T + Q AN K ++ ++I +QV ++ I Sbjct: 182 TTAVRGTLLSERGTVTVDKRTNTLIIQDVPASVAN--IKALIERIDIP-VEQVMIEARIV 238 Query: 204 EVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGG--------DFSVKGVL 251 + +++G G + G S+ + V+ GG D V + Sbjct: 239 SANENFGRKLGVSFGAHGQNGKVHYGGSQGSLWAMRQEGVAAGGHQNSHLNVDLGVDNAM 298 Query: 252 DRFSF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 R +F + L A++ ++ P + Q+A +SG Q Y+ + S Sbjct: 299 GRIAFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHS 358 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 GA++ + ++L TP + G+IGL++ + PV + + + +T V Sbjct: 359 -GASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPTL---GHIAIQEDAIETNVI 414 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G T+VL G+ + + +P L +P+LG LFR+ +++E+ I TP LV+ Sbjct: 415 IEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473 >gi|254558682|ref|YP_003065777.1| General secretion pathway protein D [Methylobacterium extorquens DM4] gi|254265960|emb|CAX21710.1| putative General secretion pathway protein D [Methylobacterium extorquens DM4] Length = 794 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 74/295 (25%), Positives = 126/295 (42%), Gaps = 22/295 (7%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A E + + + + RNQY +++ L+ A QV L+ IAEV + Q G Q + Sbjct: 471 ADEANNSLVISATRNQYDKIL--RILGRLD-AMPTQVLLETVIAEVTLNNELQFGVQWFL 527 Query: 220 TGSSS-------GPSKSFAADFGGKFV----SEGGDFSVKGVLDRFSFETVLHALERATA 268 S S ++S A G + G +L+ F VL+AL+ T Sbjct: 528 KNSGSRFNLAQADTNRSVAQGTSGTDALIKAAVRGVPGFNYLLNASDFNVVLNALQGVTR 587 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPT 321 + ++ P +T + ++A G Q S + + D GV+L TP Sbjct: 588 VNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVILSVTPR 647 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 V G + L I EVS+ V + + P+ R R+ T+V + G ++ + G++++ Q Sbjct: 648 VNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAVNDGHSLAIGGMVQEKAQI 707 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 E +P+L +PI+G FRN R TE+ + P +++ D D Sbjct: 708 TNESVPVLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEADRIAEDFRQQ 762 >gi|288818949|ref|YP_003433297.1| putative type IV pilus biogenesis protein [Hydrogenobacter thermophilus TK-6] gi|288788349|dbj|BAI70096.1| putative type IV pilus biogenesis protein [Hydrogenobacter thermophilus TK-6] gi|308752535|gb|ADO46018.1| type II and III secretion system protein [Hydrogenobacter thermophilus TK-6] Length = 592 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 112/265 (42%), Gaps = 38/265 (14%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSI------------TGSSSGPSKSFAADFGGKFV 239 QV ++ I EVR L+++G ++ G+ G + A G FV Sbjct: 329 SPVQVKIEARIVEVREQALRELGINWNVLLSQARVPQFWQGGAGQGANIGVAPAPGTIFV 388 Query: 240 ---------------------SEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTL 277 + GG F+ + L ALER I+ +A+PT+ Sbjct: 389 PPDPTSVGPRSPIYYTPGLSQTPGGIFAFSYQKGMLNALNLRLSALERIAMIKNIAKPTV 448 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 ++ Q A+ G Q Y+T + GA ++ D + L TP V GRI L I + Sbjct: 449 VTVNAQKATIKQGVQIPYQTTVVAGGAQAANIQFKDVVLQLDVTPVVSPDGRILLDINLK 508 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 P G P+ ++A T V + G T+V+ G++ + + EG+P L ++P+L Sbjct: 509 RDTP--GEQTPQGPAINTKEASTKVVVNDGDTLVIGGIIDNQETKTNEGLPGLVRVPVLK 566 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 LF + ++E+ I TP LV+ Sbjct: 567 WLFGQESSQKIQSELLIFLTPVLVR 591 >gi|15642863|ref|NP_227904.1| comE protein, putative [Thermotoga maritima MSB8] gi|4980577|gb|AAD35182.1|AE001695_8 comE protein, putative [Thermotoga maritima MSB8] Length = 1285 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 58/262 (22%), Positives = 114/262 (43%), Gaps = 6/262 (2%) Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V+ F+ +G ++ ++ L + Q+ + I V R ++ ++ + + Sbjct: 1029 VDSLNNFMVVTGISETIKRELDNIIEKLKKPTK-QIEISAKI--VDRSLIDRLSKETGLE 1085 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + + + V++ DF + G + + + T LA P + Sbjct: 1086 LTGENVNVGSSGAEISFSVTDYLDFEKIFGEILNNTLSLQFSDQKTNTLDDILASPRIVT 1145 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 SG+ A G + Y T ++ G V + G+ L TP V S I L + + SEP Sbjct: 1146 TSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELDLFVKASEP 1205 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +N ++P R R+A T + + +G TI + GL+++ + +P L +P++G FR Sbjct: 1206 GNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLPFLGDLPVIGQFFR 1263 Query: 400 NSRFNREETEIFIAATPFLVKP 421 N+E+ ++ I T +V+P Sbjct: 1264 TKSENKEKRDLVIFLTVRVVEP 1285 >gi|262373636|ref|ZP_06066914.1| general secretion pathway protein D [Acinetobacter junii SH205] gi|262311389|gb|EEY92475.1| general secretion pathway protein D [Acinetobacter junii SH205] Length = 709 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 112/334 (33%), Gaps = 49/334 (14%) Query: 130 FIADSNIRVEMVSDTVVLHGMVR-TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 +A + + V + G V + + + + + Q +K+++LL Sbjct: 387 RLAGGELSADNVGGVLSARGTVSIDPRTNTLIINDTSQKIDQ----------IRKMIDLL 436 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------------- 228 +++ QV ++ I D K++G + I + Sbjct: 437 DVS-VKQVMIEARIVRASTDFTKEMGVKWGILSQGIASNNDLLVGGSDTTLWNLREPTAD 495 Query: 229 --------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + + G L F + L A++ ++ Sbjct: 496 SETGGWKYDIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVVST 555 Query: 275 PTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 P + Q+A SG Q Y T + D + L TP++ G++ +++ Sbjct: 556 PKVLTADKQAAKIESGTQIPYSSSTGGGANAVPKTEFIDATLSLDVTPSITPEGKVMMKL 615 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 P G + + DT V + +G T+VL G+ + + + +P L +P Sbjct: 616 NITKDSPGTPTPTGQL-TINKNTIDTNVVVDNGETVVLGGIFEQENINSQTKVPFLGDLP 674 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +G LFR + E+ I TP +V R+ Sbjct: 675 YVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRN 708 >gi|260767306|ref|ZP_05876246.1| MSHA biogenesis protein MshL [Vibrio furnissii CIP 102972] gi|260617713|gb|EEX42892.1| MSHA biogenesis protein MshL [Vibrio furnissii CIP 102972] gi|315181306|gb|ADT88220.1| MSHA biogenesis protein MshL [Vibrio furnissii NCTC 11218] Length = 547 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 67/322 (20%), Positives = 120/322 (37%), Gaps = 32/322 (9%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 ++E ++ G +++ + +A L+ R ++ +N+ + QV Sbjct: 222 QLEKAVSRLIGSGRGQSVVVTPQAGVLTLRAYPDEVRE------VRQFLNVSQQRMQRQV 275 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG------PSKSFAADFGGKFVSEGGDFSVKGV 250 L+ I EV Q G S +G S + G + Sbjct: 276 ILEAKILEVTLTDGYQQGINWSNMSFGNGKVVIDRIGSSASTLPGLDAIGTLLSGQTNIT 335 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----------SS 300 + SF +VL + + L+ P +TA + Q A G Y T + Sbjct: 336 VSDGSFSSVLSFMATQGDLNVLSSPRVTAANNQKAVIKVGSDEYYVTDLSSVVGSGDNTQ 395 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR- 352 + +T G+ L TP + G + L + V E + +P R Sbjct: 396 AAPDVELTPFFSGISLDVTPQIDDKGNVLLHVHPSVIEVTQQDKEITYNDSTFTLPLARS 455 Query: 353 -VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 +R++D+ + +G +V+ GL+K + +P L IP LG LFR++ E+TE+ Sbjct: 456 SIRESDSVIRAQNGDVVVIGGLMKTNTSNKVSKVPFLGDIPALGHLFRSTTELTEKTELV 515 Query: 412 IAATPFLVK-PVAMRDLSRPDD 432 I P +V ++L R D Sbjct: 516 ILLKPTVVGVNTWQKELERSRD 537 >gi|91785421|ref|YP_560627.1| putative fimbrial type-4 assembly signal peptide, PilQ-like [Burkholderia xenovorans LB400] gi|91689375|gb|ABE32575.1| Putative fimbrial type-4 assembly signal peptide, PilQ-like protein [Burkholderia xenovorans LB400] Length = 567 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 90/238 (37%), Gaps = 11/238 (4%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------GKFVSEG 242 QV ++ I E + +G + S+ S++ S D F + Sbjct: 331 RPTRQVLIEARIVEGEHGFSRNLGVKLSMATSNADGSAKGLTDAAYDLSARPIAGFDAAT 390 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 ++ L ALE ++ P + A G + Y+ Sbjct: 391 AGLTLFAAGATRLLNIELSALEAQGRGEIVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQ 449 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 G + V + L P ++ GR+ L + +AG P+ + T VE+ Sbjct: 450 GVSGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGEQTDAG--PAINTKHVQTRVEV 507 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GGT+ + G+ D + +PLL KIP+LGALFR+ +E+ + TP +V+ Sbjct: 508 EDGGTVSIGGIYATDDRDDVTQVPLLGKIPVLGALFRHRAHRDRRSELAVFITPRVVQ 565 >gi|291612584|ref|YP_003522741.1| type IV pilus secretin PilQ [Sideroxydans lithotrophicus ES-1] gi|291582696|gb|ADE10354.1| type IV pilus secretin PilQ [Sideroxydans lithotrophicus ES-1] Length = 688 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 108/253 (42%), Gaps = 18/253 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-------------- 227 + + L++ QV ++ E + +G + S TG S + Sbjct: 434 RTFVKQLDVP-VRQVMIEARFVEAGETFNQTLGGRLSYTGPGSTVAGGGFAGPAGNRAAL 492 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 + + G V+ G ++ L+A E + +A P + A+ Sbjct: 493 STTSLLPGAGSVTGGMTLNLFNAAATKVLTLELNASELDGTTKNIASPRVVTGDKTPATI 552 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 SG + Y +SS GATSV + L TP + +G+++ VS+ +G Sbjct: 553 ESGVEVPYLQATSS-GATSVAFKKAVLGLTVTPQITPDDHVGMKL--SVSQDTVGNIYSG 609 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +PS +K DT V + +GGT+V+ G+ D KE IPLL IPILG LF+ + + Sbjct: 610 VPSINTKKVDTQVLVDNGGTVVIGGVYTQDATDSKEQIPLLGDIPILGWLFKTDTIVKAK 669 Query: 408 TEIFIAATPFLVK 420 E+ + TP +VK Sbjct: 670 KELLVFITPKIVK 682 >gi|148254077|ref|YP_001238662.1| putative general secretion pathway protein D [Bradyrhizobium sp. BTAi1] gi|146406250|gb|ABQ34756.1| Putative general secretion pathway protein D [Bradyrhizobium sp. BTAi1] Length = 780 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 68/297 (22%), Positives = 120/297 (40%), Gaps = 32/297 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-------SKSFAADFGGKFVSEGG 243 + QV + TIAEV + G Q +T + G + + S G Sbjct: 492 RPQLQVAIDATIAEVTLNDNLNYGVQAYLTSKNLGLRPDQGSLLNTTSTSAPATVASAAG 551 Query: 244 DFS---VKGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + + F+F +L AL T ++ L+ P+L I Q+A+ G Q Sbjct: 552 TITNAFLNRAFPGFNFLIGSESQPSAILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQ 611 Query: 293 HLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S ++T ++ + G++L P V G + L I+ E+S Sbjct: 612 VPVSTGSATVLTTNNTVVNTIDYRNTGIILRVAPRVNENGNVRLEIEQEISNVSPQTANS 671 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P+ RK + V + SG T++LAGL+ + Q + G+P + +IP+LG LF N+ R Sbjct: 672 LTPTVAQRKVKSAVAVASGQTVLLAGLISETHQGTRNGVPGVDQIPVLGDLFSNNDRTRG 731 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 TE+ I P +++ D + V ++ ++ + + G+ Sbjct: 732 RTELIIFIRPQIIRDG--------TDAHYVAEELRSKLRGTIRPVSTSALQPPRAGR 780 >gi|17223826|gb|AAL10693.1| hypothetical type II secretion protein [Escherichia coli ETEC H10407] Length = 616 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 246 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562 >gi|109896501|ref|YP_659756.1| pilus (MSHA type) biogenesis protein MshL [Pseudoalteromonas atlantica T6c] gi|109698782|gb|ABG38702.1| pilus (MSHA type) biogenesis protein MshL [Pseudoalteromonas atlantica T6c] Length = 550 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 65/257 (25%), Positives = 106/257 (41%), Gaps = 23/257 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGKFVSEGGDFSVKG 249 + QV L+ I EV Q G + ++SG + S A G +S Sbjct: 278 QRQVILEARILEVSLSDGYQQGINWTEVLANSGSTDFQFSTTAGSLGDAISASLGGITSL 337 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------- 301 F VL+ L+ ++ L+ P +TAI+ Q A G + T SS Sbjct: 338 SFVNKDFSGVLNLLQTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSQSTVTAAT 397 Query: 302 ---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVN----AGDMP 349 T +T G+ L TP + + G + L + V E V+ +N + Sbjct: 398 SSTTPNIELTPFFSGIALDVTPQIDAQGGVLLHVHPSVIETEEQEKVVTLNEEQFVLPLA 457 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + +R++DT + SG +V+ GL++ I + + PLL IP+LG LF+N + + E Sbjct: 458 ASNIRESDTIIHARSGEIVVIGGLMQSIISETESKTPLLGDIPLLGNLFKNRQETETKKE 517 Query: 410 IFIAATPFLVKPVAMRD 426 + I P +V R Sbjct: 518 LVILLRPTVVGADTWRQ 534 >gi|194364334|ref|YP_002026944.1| general secretion pathway protein D [Stenotrophomonas maltophilia R551-3] gi|194347138|gb|ACF50261.1| general secretion pathway protein D [Stenotrophomonas maltophilia R551-3] Length = 733 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 79/315 (25%), Positives = 129/315 (40%), Gaps = 27/315 (8%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 V + V + AVE + T L +S + S ++V+ L++ QV ++ + Sbjct: 408 GNVSVSLEVEGDRVGVSAVEETNTLLVRSTPQAW--RSIREVIEKLDVM-PLQVHIEAQV 464 Query: 203 AEVRRDILKQIGFQHSITGSSSG-------PSKSFAADFGGKFVSEGGDFS----VKGVL 251 AEV + + G + +G + A GG + S G + + Sbjct: 465 AEVALEGDLKYGVNWFFDNAVAGRALTGALAGVTLPAAAGGSWSSLAGAATGGEGLGWAF 524 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TS 306 + V+ AL++ T +R L P++ + A+ G + T + +TG +S Sbjct: 525 TGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGDKVPINTTTVNTGIGTSSYSS 584 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAGDMPSYRVRKADTTV 360 V D GV+L P V G + L I EVS P +K T Sbjct: 585 VQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASNVPENCNPQERNCNPRISTKKLSTEA 644 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + SG TI+LAGL+ D GIP LS+IP++GALF +E+ + TP +V+ Sbjct: 645 AVQSGDTIMLAGLITDTGTDGSSGIPGLSRIPVVGALFGQKSRTSRRSEVIVLLTPSIVR 704 Query: 421 PVAMRDLSRPDDHYS 435 ++ D YS Sbjct: 705 NS--QEARNLTDEYS 717 >gi|18139873|gb|AAL60184.1|AF426313_4 hypothetical type II secretion protein GspD [Escherichia coli] Length = 616 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 44/320 (13%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 246 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +++ D Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562 >gi|1246517|emb|CAA60131.1| pulD-like [Escherichia coli] Length = 596 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 55/297 (18%), Positives = 106/297 (35%), Gaps = 30/297 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+I QV ++ IAE++ +G Q + S + Sbjct: 275 ENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTGLPITTMVQTR 333 Query: 242 GGDF-------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + + + ++ +L AL ++ LA P++ + A+F Sbjct: 334 QNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFN 393 Query: 289 SGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---I 341 G + +T S +V G+ L P + + L I+ EVS + Sbjct: 394 VGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAV 453 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 ++ R + + + T+V+ GLL I+ + +PLL IP+LG LFR Sbjct: 454 ATTTDLGATFNTRTVTNAMLVGNCETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAK 513 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 + + + P +++ D + K FN+ KE + Sbjct: 514 SEQTAKRNLMLFIRPTIIR---------ERDGFRHASAEKYQSFNQEQVQSRGKETT 561 >gi|126176391|ref|YP_001052540.1| general secretion pathway protein D [Shewanella baltica OS155] gi|125999596|gb|ABN63671.1| general secretion pathway protein D [Shewanella baltica OS155] Length = 705 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 110/283 (38%), Gaps = 46/283 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFV 239 + V+N L+I QV ++ I EV G Q + + G G V Sbjct: 337 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWASKAGGGTQFNNLGPTIGEVGAGV 395 Query: 240 ------------------------------------SEGGDFSVKGVLDRFSFETVLHAL 263 + G + + F ++ A+ Sbjct: 396 WAAQTEKASQTCTGSGDNKTCTDNPDKRGDVTLLAQALGKVNGMAWGVAMGDFGALIQAV 455 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHF 318 T LA P++T + Q ASF G + T S+++ + +V + GV L Sbjct: 456 SSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERKEVGVKLKV 515 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + + L I+ EVS + N G S+ R+ TTV SG +VL GL+ +++ Sbjct: 516 VPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEV 573 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 Q+ + +P L IPI+G LF++S + + + I P +++ Sbjct: 574 QESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKPTIIRD 616 >gi|113968501|ref|YP_732294.1| general secretion pathway protein D [Shewanella sp. MR-4] gi|114045664|ref|YP_736214.1| general secretion pathway protein D [Shewanella sp. MR-7] gi|113883185|gb|ABI37237.1| general secretion pathway protein D [Shewanella sp. MR-4] gi|113887106|gb|ABI41157.1| general secretion pathway protein D [Shewanella sp. MR-7] Length = 700 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 109/280 (38%), Gaps = 43/280 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394 Query: 236 -------GKFV----------------------SEGGDFSVKGVLDRFSFETVLHALERA 266 G V + G + + F ++ A+ Sbjct: 395 WQAQGEDGTTVCTENGTCTENPDSRGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVSAD 454 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPT 321 T LA P++T + Q ASF G + T S+++ +V + GV L P Sbjct: 455 TNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVVPQ 514 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + L I+ EVS + N G S+ R+ TTV SG +VL GL+ +++Q+ Sbjct: 515 INEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEVQES 572 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +P L IP+LG LF++S + + + I P +++ Sbjct: 573 VQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIRD 612 >gi|117918609|ref|YP_867801.1| general secretion pathway protein D [Shewanella sp. ANA-3] gi|117610941|gb|ABK46395.1| general secretion pathway protein D [Shewanella sp. ANA-3] Length = 702 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 110/282 (39%), Gaps = 45/282 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKADGGTQFNNLGPTIGEIGAGI 394 Query: 236 -------GKFVSEGGDFSVKGV------------------------LDRFSFETVLHALE 264 G +++ V G + F ++ A+ Sbjct: 395 WQAQDKEGTYITNPSTGEVIGKNPDTKGDVTLLAQALGKVNGMAWGVAMGDFGALVQAVS 454 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFT 319 T LA P++T + Q ASF G + T S+++ +V + GV L Sbjct: 455 ADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 514 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + L I+ EVS + N G S+ R+ TTV SG +VL GL+ +++Q Sbjct: 515 PQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEVQ 572 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +P L IP+LG LF++S + + + I P +++ Sbjct: 573 ESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIRD 614 >gi|320155211|ref|YP_004187590.1| MSHA biogenesis protein MshL [Vibrio vulnificus MO6-24/O] gi|319930523|gb|ADV85387.1| MSHA biogenesis protein MshL [Vibrio vulnificus MO6-24/O] Length = 531 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 69/280 (24%), Positives = 109/280 (38%), Gaps = 29/280 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + + + QV L+ I EV Q G S +S G S S + G V Sbjct: 242 RQFLGISQERMQRQVILEAKILEVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLP 301 Query: 242 GGD-------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G D + SFE VL + + L+ P +TA + Q A G Sbjct: 302 GLDAIGSLLGGQTNVTISDGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQY 361 Query: 295 YKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341 Y T SS ++T G+ L TP + G + L + EV E Sbjct: 362 YVTALSSNVGNDDKSKAVPEVTLTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETK 421 Query: 342 GVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 +N G + +R++D+ + G +V+ GL+K + + +P IP Sbjct: 422 QLNLGGDFQNVTLPLAKSSIRESDSVIRARDGDVVVIGGLMKSNTIERVSKVPFFGDIPA 481 Query: 394 LGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 LG LFRN+ ++TE+ I P +V ++L R D Sbjct: 482 LGHLFRNTSNLTQKTELVILLKPTVVGVNTWQKELERSRD 521 >gi|3978475|gb|AAC83352.1| outer membrane secretion protein Q [Pseudomonas alcaligenes] Length = 649 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 134/319 (42%), Gaps = 37/319 (11%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ ++++ L++ QV ++ I E+ DI +G Q ++ + G +FG Sbjct: 334 ATLEEIVRNLDVP-RAQVMVEAAIVEISGDISDALGVQWAV-DARGGTGGLGGVNFGNTG 391 Query: 239 VSEGG-----------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 +S G D ++ G+ +F ++ AL + L+ P+L + Sbjct: 392 LSVGTVLKAIQNEEIPDDLTLPDGAIIGIGTE-NFGALITALSANSKSNLLSTPSLLTLD 450 Query: 282 GQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 Q A G ++T S +T A T++ D GV L TP + + L ++ Sbjct: 451 NQEAEILVGQNVPFQTGSYTTDASGANNPFTTIEREDIGVTLKVTPHINDGATLRLEVEQ 510 Query: 335 EVSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 E+S P GVNA + R + + G IVL GL++DD+ +PLL I Sbjct: 511 EISSIAPSAGVNAQAVDLVTNKRSIKSVILADDGQVIVLGGLIQDDVTSTDSKVPLLGDI 570 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS------VEDDAKAFFF 445 P++G LFR+++ + + + P +V+ A + YS ++D + Sbjct: 571 PLIGRLFRSTKDTHVKRNLMVFLRPTIVRDRAGM-AALSGKKYSDISVLGADEDGHSSLP 629 Query: 446 NRVNKIYGPKEASEVEGQN 464 +++ A V+ ++ Sbjct: 630 GSAERLFDKPGAGAVDLRD 648 >gi|294651771|ref|ZP_06729069.1| type IV pilus assembly protein [Acinetobacter haemolyticus ATCC 19194] gi|292822328|gb|EFF81233.1| type IV pilus assembly protein [Acinetobacter haemolyticus ATCC 19194] Length = 725 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 98/281 (34%), Gaps = 38/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228 +K+++LL+++ QV ++ I D +++G + I + Sbjct: 446 RKMVDLLDVS-VKQVMIEARIVRASTDFTREMGVKWGILSQGVTRNNDLLVGGSDTTLWN 504 Query: 229 ---------------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + D G L F + L A++ Sbjct: 505 LREPKKDSETGGWKYEIERPDNLNVDLGATTAGASRIAFGLISLSDFMLDLELSAVQADG 564 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 ++ P + Q A SG + Y T + + D + L TP++ Sbjct: 565 YGEVISTPKVMTADKQPAKIESGTKIPYSSSTGAGANAVPKTEFIDATLSLDVTPSITPD 624 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G++ +++ P G + + DT V + +G T+VL G+ + + + + Sbjct: 625 GKVMMKLNITKDAPSNPTPTGQL-TISKNSIDTNVLVDNGETVVLGGIFEQENISSQIKV 683 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P L +P +G LFR + E+ I TP +V R+ Sbjct: 684 PFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTRN 724 >gi|289207464|ref|YP_003459530.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. K90mix] gi|288943095|gb|ADC70794.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. K90mix] Length = 710 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 63/300 (21%), Positives = 118/300 (39%), Gaps = 32/300 (10%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G + + S + T L Q +++ + ++++ L++ QV ++ I Sbjct: 416 TGQFLSDRGSITIDSRTNTLLVQDTQSRIED--VRRLVQTLDVP-VQQVLIETRIVIAED 472 Query: 208 DILKQIGFQHSITG------------------------SSSGPSKSFAADFGGKFVSEGG 243 +++G + I+G S++G D + G Sbjct: 473 TFNRELGARFGISGTRGDRRTRVGGAGSIEGADAARDASTAGVGGIAIGDRLNSSLPASG 532 Query: 244 DFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 D G+ + L AL+ ++ P + +GQ+AS G + ++ ++ Sbjct: 533 DAGRAGISLLRSGVLLDLELSALQVEGRGEIISSPRVITANGQTASIKQGEEIPFQEATA 592 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 S GATS + + TP + G + L I+ EP +P R+ +T V Sbjct: 593 S-GATSTQFIEAVLSTEVTPQITPNGNVILDIRVTKDEPS-QREVLGVPGINKREVNTQV 650 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +G T+VL G+ + D + E +P IP LG LFRN + E+ I TP ++ Sbjct: 651 FVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLGNLFRNRSTENTKAELLIFVTPRVLD 710 >gi|262401919|ref|ZP_06078484.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC586] gi|262351891|gb|EEZ01022.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC586] Length = 567 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 104/264 (39%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I V+ L ++G + + ++ S Sbjct: 304 REIIESLDIP-VKQVQIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGL 362 Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + F V + + L AL+ + ++ P L Sbjct: 363 LAEDEFPVDEFLNVNLAAASTNASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRL 422 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A G + Y SSS A++V+ + L TP + R+ L + Sbjct: 423 ITTNKQPAYIEQGTEIPYLESSSSG-ASTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQD 481 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LG Sbjct: 482 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 541 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR + ++E+ I TP +V Sbjct: 542 ALFRRTYEQMGKSELLIFVTPKVV 565 >gi|229525096|ref|ZP_04414501.1| MSHA biogenesis protein MshL [Vibrio cholerae bv. albensis VL426] gi|229338677|gb|EEO03694.1| MSHA biogenesis protein MshL [Vibrio cholerae bv. albensis VL426] Length = 554 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 109/275 (39%), Gaps = 37/275 (13%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---- 234 ++V L I+ + QV L+ I EV Q G S SS+G S + + Sbjct: 256 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQD 315 Query: 235 --GGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G S G V+ SF+ V+ + + L+ P +TA + Q Sbjct: 316 SSGNPITSALPGLDAIGSLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQ 375 Query: 284 SASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR-- 331 A G Y T SS T ++T G+ L TP + G + L Sbjct: 376 KAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVH 435 Query: 332 ---IQTEVSEPVIGVNAGDMP----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 I+ E +I N+ ++ +R++D+ + G +V+ GL+K + + Sbjct: 436 PAVIEVEQQTKIITYNSQEITLPLARSSIRESDSVIRAKDGDVVVIGGLMKTNTIERVSK 495 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN ++TE+ I P +V Sbjct: 496 VPFLGDVPGLGNLFRNISNQTQKTELVILLKPTVV 530 >gi|237807143|ref|YP_002891583.1| general secretion pathway protein D [Tolumonas auensis DSM 9187] gi|237499404|gb|ACQ91997.1| general secretion pathway protein D [Tolumonas auensis DSM 9187] Length = 685 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 111/272 (40%), Gaps = 35/272 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++ L+I QV ++ I E++ G Q + T + G ++ A V+ Sbjct: 352 ERIIAKLDIR-RAQVLVEAIIVEIQDGDTLNFGVQWANT--NGGGTQFTATGLPTTTVAN 408 Query: 242 GGD----------------FSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISG 282 + S G++ F ++ ++ AL T LA P++ + Sbjct: 409 AANEWRNDGELSSTSTAALSSFNGLVAGFYEGNWAGLVTALSSNTKSNILATPSIVTLDN 468 Query: 283 QSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + A+F G + T S S+ A ++V G L TP + + L ++ EVS Sbjct: 469 KEAAFNVGQEVPVVTGSQSSTAGSVYSTVERKTVGTKLKVTPQINEGDSVLLEVEQEVSS 528 Query: 339 PVIGVNAGDMP---------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + ++ R +V + SG T+VL GLL ++ + +PLL Sbjct: 529 VASSSSTDSSSSSSNSSLGSTFNTRTVKNSVLVKSGETVVLGGLLSNNTSESVYKVPLLG 588 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421 IPILG LFR + + + + + P +++ Sbjct: 589 DIPILGYLFRYNGTSTTKQNLMVFIHPTILRD 620 >gi|24371766|ref|NP_715808.1| general secretion pathway protein D [Shewanella oneidensis MR-1] gi|24345556|gb|AAN53253.1|AE015466_13 general secretion pathway protein D [Shewanella oneidensis MR-1] Length = 704 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 110/282 (39%), Gaps = 45/282 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 396 Query: 236 -------GKFVSEGGDFSVKGV------------------------LDRFSFETVLHALE 264 G +++ V G + F ++ A+ Sbjct: 397 WQAQDKEGTYITNPSTGEVIGQNPKTKGDVTLLAQALGKVNGMAWGVAMGDFGALVQAVS 456 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFT 319 T LA P++T + Q ASF G + T S+++ +V + GV L Sbjct: 457 ADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 516 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + L I+ EVS + N G S+ R+ TTV SG +VL GL+ +++Q Sbjct: 517 PQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEVQ 574 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + +P L IPILG LF++S + + + I P +++ Sbjct: 575 ESIQKVPFLGDIPILGHLFKSSSSKKTKKNLMIFIKPTIIRD 616 >gi|225848499|ref|YP_002728662.1| PilQ [Sulfurihydrogenibium azorense Az-Fu1] gi|225643373|gb|ACN98423.1| PilQ [Sulfurihydrogenibium azorense Az-Fu1] Length = 604 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 24/251 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSG-------PSKSFAA 232 Q++++ I ++ +K +G Q I G++S P ++A Sbjct: 352 PYQISIEARIVQISSKNVKDLGIQWGGLASNIDNNNTKIIAGTNSTSYLANYRPGSAYAV 411 Query: 233 DFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 DF G FS+ +L + L AL+ + L++P++ I G++A + G Sbjct: 412 DFPAVQSKIPGGFSLGFILGGTQNFLDIRLSALQSIGKSKILSKPSVITIDGETAEISQG 471 Query: 291 GQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 + Y T ++ G T SV+ + L+ TP + G I + + P Sbjct: 472 YEIPYTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDLIITQDIPDFKNLLLGN 531 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + V G +V+ G+L+ G+P L IPILG LF+ + T Sbjct: 532 PPIQTKTVTSKVVAKDGSVVVIGGILEKTEDTQTSGVPGLMNIPILGNLFKENFKQDTST 591 Query: 409 EIFIAATPFLV 419 E+ I +P +V Sbjct: 592 ELLIFLSPKIV 602 >gi|300696689|ref|YP_003747350.1| secretion type II protein related to gspD (secretin) protein [Ralstonia solanacearum CFBP2957] gi|299073413|emb|CBJ52927.1| secretion type II protein related to gspD (secretin) protein [Ralstonia solanacearum CFBP2957] Length = 754 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 83/395 (21%), Positives = 146/395 (36%), Gaps = 55/395 (13%) Query: 53 GLNKVIILQVPVDVQ-DVLVSDPTKADVV------------VHSPRTMYLFGKNVGQANV 99 GLN V V D + V + + T A VV V + ++ Sbjct: 206 GLNFVFDKDVRTDQKVTVFLRNSTVASVVNTVLLTNQLEQRVLDGNAILIYPNTP----- 260 Query: 100 ILIGHDGKQMLNLD-ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 D + + +L D + TL+ + +I V+ + +V+ I+ ++ Sbjct: 261 -AKQRDYQPLTVRTFVLSNSDAKDVANTLKTILKTRDIVVDEKRNMIVMRDTPDAIEAAE 319 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + V + E E +V L+V I EV+R L+ +G Q Sbjct: 320 KLVAVHEM-------------------------PEPEVMLEVEILEVKRSRLQDLGIQLP 354 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S + + S + + + + ++ T LA P + Sbjct: 355 SQLSLTPLASSSGGTLTLDDLRHLNPTRIGATVSPLN----INVNAAVTDTNVLANPRVR 410 Query: 279 AISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + + A G + T +S+ A +V D G+ L PTV + +RI E Sbjct: 411 TRNKEKARIQVGQRVPNVTTTSTATGFVAENVQYVDVGLKLEVEPTVTPDNEVTIRINLE 470 Query: 336 VSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 VS+ + V R A T + L G +LAGL++D+ + +P L IP Sbjct: 471 VSDIISQVQTKSGSIAYEIGTRNATTLLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIP 530 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 LG LF N+ ++EI ++ TP +++P +L Sbjct: 531 ALGRLFGAQSDNKLKSEIVLSITPRVIRPAQRPNL 565 >gi|299768549|ref|YP_003730575.1| Type II secretory pathway, component HofQ [Acinetobacter sp. DR1] gi|298698637|gb|ADI89202.1| Type II secretory pathway, component HofQ [Acinetobacter sp. DR1] Length = 721 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 108/281 (38%), Gaps = 39/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 +K+++LL++ QV ++ I K++G + I + + Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 501 Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 D G + F + + D F + L AL+ Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSD-FMLDLELSALQADG 560 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325 ++ P + Q A +G Q Y++ ++S ++ + D + L+ TP++ Sbjct: 561 YGEVISTPKVMTADKQPAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 620 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G+I +++ G++ + +T V + +G T++L G+ + + + Sbjct: 621 GKIQMKLDISKDSVAGAAPNGEL-ILNKNQINTNVLVNNGETVILGGVFEQTTTNSQTKV 679 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P IP+LG LFR + ++ E+ I TP +V +R+ Sbjct: 680 PFFGDIPVLGHLFRKDVKSDDKQELLIFVTPRIVNDTLVRN 720 >gi|260424842|ref|ZP_05733440.2| bacterial type II and III secretion system protein [Dialister invisus DSM 15470] gi|260403342|gb|EEW96889.1| bacterial type II and III secretion system protein [Dialister invisus DSM 15470] Length = 449 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 70/373 (18%), Positives = 127/373 (34%), Gaps = 69/373 (18%) Query: 89 LFGKNVGQANVILIGHD-----GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 L + G +I++G G+ + + + + LR+ ++ ++ Sbjct: 104 LIAREEGST-LIVVGESAMKNGGRATKSYKLS-YAEAKEVAEGLRQLSDSVHVAYNQTAN 161 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 V+L G I ++ V+ L++ E QV ++ + Sbjct: 162 AVILSGTPLEIMETAA------------------------VLRSLDVP-EKQVKVEAEVI 196 Query: 204 EVRRDILKQIGFQHSITGSSSGP----------------------------------SKS 229 V R K++G + Sbjct: 197 AVNRSHSKELGIDWDFKALTGSGEYRRESWNEQRYVTDDAGNIKYDKNGNPRMRNIEHNG 256 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + + SV G F L+AL R LA P + ++G+ A Sbjct: 257 WNVKIPEGYAGISYGRSVAGHPYTAFFRANLNALVSTGKARILARPNVVTMNGREAEILI 316 Query: 290 GGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + G T+ D G+ L +TP + + G I + EVS P + V Sbjct: 317 GNKIPVIVEHVDNGVRTTTTEYRDAGIKLTYTPRISADGEITANVNAEVSTPYL-VPEMR 375 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 R+A+T V L SG + + GL+ + + +P+L IP+LG LF++ + EE Sbjct: 376 AYRIITRQANTLVRLRSGDMLTIGGLIDKEENKTFRKVPILGDIPLLGKLFQSKSRSVEE 435 Query: 408 TEIFIAATPFLVK 420 +EI I ++ Sbjct: 436 SEIVIIIKAEILD 448 >gi|149189158|ref|ZP_01867445.1| fimbrial assembly protein [Vibrio shilonii AK1] gi|148836912|gb|EDL53862.1| fimbrial assembly protein [Vibrio shilonii AK1] Length = 550 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 106/263 (40%), Gaps = 27/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+++ L+I QV ++ + ++ ++++G + T + + + Sbjct: 288 KEIIASLDIP-VKQVQIEARVVTIKEGNIEELGIRWGYTSINGDTTIGSTIEGNLASSGI 346 Query: 242 GGD-----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 GG F V + + L AL+ + ++ P L Sbjct: 347 GGGEVDIDDFLNVNLGALSDNAASIAFQVASLGSNTLLDLELSALQSESKAEIISSPRLI 406 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + +SA G + Y S+S+GAT+V + L TP + R+ L + Sbjct: 407 TTNKKSAYIEQGTEIPY-LKSTSSGATAVEFKKAVLSLTVTPQITPDNRLILDLDVTQDR 465 Query: 339 P--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 V+ G+ + ++ T V + G T+VL G+ + + + +P+L IP LGA Sbjct: 466 VGEVLKTLEGETVAIDTQRIGTQVLVNDGETVVLGGIFQHAMTSKVDKVPVLGDIPGLGA 525 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFR + N + E+ I TP ++ Sbjct: 526 LFRRTYENIGKNELLIFVTPKII 548 >gi|269959332|ref|ZP_06173715.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835769|gb|EEZ89845.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 715 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 13/248 (5%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ L++ QV L++TIAEV + G + + + + S A GG Sbjct: 461 LIAQLDVM-PKQVILEMTIAEVTMTDEFKFGVEWAFSNGNFSASTKDAFGLD----KVGG 515 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---TVSS 300 F D F L A E + +++P+L G A+ G T S Sbjct: 516 GFIKWMSGDDF---INLQAFESNNNVNIMSKPSLLVRDGVEANINVGTDIPVVGQTTTDS 572 Query: 301 STGAT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADT 358 + G T SV GV + TPT+ + G + + I E S V G + PS R T Sbjct: 573 NNGVTRSVEYRKTGVKVAVTPTINAQGIVSMVISQENSNQVDGGTSVEGNPSIFDRSITT 632 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V SG T++L GL+ +++ +P L +P++G LF N+ +TE+ I TP + Sbjct: 633 EVVAESGQTVILGGLISENVTNNGSAVPFLGSLPVVGGLFGTKTDNKTKTELVIMVTPRI 692 Query: 419 VKPVAMRD 426 V+ + D Sbjct: 693 VESSSQWD 700 >gi|291279696|ref|YP_003496531.1| general secretion pathway protein D [Deferribacter desulfuricans SSM1] gi|290754398|dbj|BAI80775.1| general secretion pathway protein D [Deferribacter desulfuricans SSM1] Length = 621 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 67/358 (18%), Positives = 143/358 (39%), Gaps = 36/358 (10%) Query: 97 ANVILIGHDGKQMLNLD-----ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 N +++ + ++ + + D + L + + VE + + ++L + Sbjct: 228 TNTLIVAAKEDDINKIEYIINQLDVSNDNSALAPQVFKLKHVYATDVEGILNKLLLSNID 287 Query: 152 RTIQDSQRAVELSETFLSQ--SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + R+ ++ + + ++ S+ ++++ L+ QV ++ + E + Sbjct: 288 PKKKKVVRSKVAADKSTNSIIALGDKELYSNIQQLLEKLDKP-RKQVYVEALVLETSIEK 346 Query: 210 LKQIGFQHSITGSSS-----------------------GPSKSFAADFGGKFVSEGGDFS 246 G + G + G S +FAA GG + G+ Sbjct: 347 GADFGVEWLAGGGNENFAGSAGFLNNGALTNFQSPVLEGNSPNFAALPGGFTAAILGNVI 406 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SST 302 + + +++ ++ +AI ++ P + + + A G + T + ++ Sbjct: 407 TYEGVKFPTLSALVNFVKTDSAINIISNPQILTLDNEEAEVFVGENRPFLTSTKFDANNN 466 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVE 361 S D G+ L TP + + L+I+ EV + + N P RK T VE Sbjct: 467 PVQSYDYRDVGIRLKITPHISDNKTLTLKIEQEVKKVIANAGNDLTAPITLTRKTKTMVE 526 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G T+V++GL+ DD +P LSKIPILG LF++ +R +T + + T ++ Sbjct: 527 LIDGYTMVISGLIGDDTSVSNSEVPFLSKIPILGWLFKSRNRSRSKTNMMVFITAKVI 584 >gi|332160534|ref|YP_004297111.1| general secretion pathway protein D [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664764|gb|ADZ41408.1| general secretion pathway protein D [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 648 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 100/253 (39%), Gaps = 12/253 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----SKSFAADFGGK 237 +V+ L+I QV ++ I E + +G Q + + S + Sbjct: 340 DQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKTNSIQTNNNSG 398 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + +++ + AL + LA P++ + A F G + T Sbjct: 399 NPIPMMMAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 458 Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PS 350 + +T S++ GV+L P + + L I+ EVS + Sbjct: 459 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSV 518 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+V+ GLL I ++ +PLL IP +G LFR S+ E++ + Sbjct: 519 FNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQSKEKIEKSNL 578 Query: 411 FIAATPFLVKPVA 423 + P +++ + Sbjct: 579 ILFIRPTILRETS 591 >gi|262193577|ref|YP_003264786.1| type IV pilus secretin PilQ [Haliangium ochraceum DSM 14365] gi|262076924|gb|ACY12893.1| type IV pilus secretin PilQ [Haliangium ochraceum DSM 14365] Length = 1269 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 101/270 (37%), Gaps = 36/270 (13%) Query: 183 KVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----- 235 ++++LL Q+ ++ I E R ++ G Q + + F ++G Sbjct: 993 RIIDLLTRLDTQTPQIQIEARIVEARSTFAREFGVQWGGSLLDANTGLVFPGNYGVVGGN 1052 Query: 236 -------GKFVSEGGDFSVK------------------GVLDRFSFETVLHALERATAIR 270 + DF+V V + L ALE +R Sbjct: 1053 TDSQTVGTGVAAASPDFAVNLPAATGTGAGGALGFAFGSVGGGLNLTLRLSALEDTGTVR 1112 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIG 329 ++ P +T ++ A + G +S++ + L TP V I Sbjct: 1113 IISAPKITVLNNVEAEISQGVSIPISVISAN--GVQTQFVQADLSLEVTPHVSQRDCSIA 1170 Query: 330 LRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + +Q + +E + A P+ ++A TTV + T V+ G+ + +P L Sbjct: 1171 MDLQIQKNEADFVNTGARGDPTILRKEASTTVLVADNETTVIGGIYTRNSGLSYSKVPFL 1230 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFL 418 +P+LG LF+N R N E TE+ + TP + Sbjct: 1231 GDLPLLGWLFKNRRENDERTEVLVFITPRI 1260 >gi|217971366|ref|YP_002356117.1| general secretion pathway protein D [Shewanella baltica OS223] gi|217496501|gb|ACK44694.1| general secretion pathway protein D [Shewanella baltica OS223] Length = 706 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 47/284 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 337 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGV 395 Query: 236 -------GKFVSE--------------------------GGDFSVKGVLDRFSFETVLHA 262 G ++ G + + F ++ A Sbjct: 396 WQAQGEKGSSITTLDPEGKPVVTTNPDKRGDVTLLAQALGKVNGMAWGVAMGDFGALIQA 455 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317 + T LA P++T + Q ASF G + T S+++ + +V + GV L Sbjct: 456 VSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERKEVGVKLK 515 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + + L I+ EVS + N G S+ R+ TTV SG +VL GL+ ++ Sbjct: 516 VVPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEE 573 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +Q+ + +P L IPI+G LF++S + + + I P +++ Sbjct: 574 VQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKPTIIRD 617 >gi|90412971|ref|ZP_01220969.1| putative MSHA biogenesis protein MshL [Photobacterium profundum 3TCK] gi|90325986|gb|EAS42425.1| putative MSHA biogenesis protein MshL [Photobacterium profundum 3TCK] Length = 559 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 79/317 (24%), Positives = 121/317 (38%), Gaps = 33/317 (10%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 ++E ++ G RTI S +A +S R K+ + + + QV Sbjct: 232 QLEKAVQAMIGSGEGRTIVVSPQASLISVRAYPNELRE------VKEFLGVSKKRLKRQV 285 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPS------KSFAADFGGKFVSEGGDFSVKGV 250 L+ I EV Q G S SS G + AA GG +S Sbjct: 286 VLETKIMEVTLSDGYQQGVNWSNITSSIGGTDIIFGRTGPAALPGGDAISSLLGGQTNVT 345 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----------SS 300 + +FE VL LE + L+ P +TA + Q A GG + T S+ Sbjct: 346 ISDGNFEAVLSFLETQGDLNVLSSPRVTAANNQKAVIKVGGDQYFVTDISGGEVSGDNST 405 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--------- 351 S +T G+ L TP + G + L + V E V D+ + Sbjct: 406 SAPDIELTPFFSGISLDVTPQIDDEGGVLLHVHPTVVEVVNETKDIDLGATFGVYKLPLA 465 Query: 352 --RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R++D+ + SG +V+ GL+K I +P L IP LG LFRN + +TE Sbjct: 466 KSSIRESDSVIFARSGDVVVIGGLMKSAINDQVSKVPFLGDIPGLGHLFRNVNKVQSKTE 525 Query: 410 IFIAATPFLVKPVAMRD 426 + I P +V + Sbjct: 526 LVILLKPTVVDDQTWQQ 542 >gi|261211199|ref|ZP_05925488.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC341] gi|260839700|gb|EEX66311.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC341] Length = 571 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 104/264 (39%), Gaps = 28/264 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I V+ L ++G + + ++ S Sbjct: 308 REIIESLDIP-VKQVQIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGSIESNLWQQGL 366 Query: 230 -----------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + F V + + L AL+ + ++ P L Sbjct: 367 LADDKFPVDQFLNVNLASTSANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRL 426 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + Q A G + Y SSS A++V+ + L TP + R+ L + Sbjct: 427 ITTNKQPAYIEQGTEIPYLESSSSG-ASTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQD 485 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G+ S ++ T V + +G T+VL G+ + I + +PLL +P+LG Sbjct: 486 RRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG 545 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 ALFR + ++E+ I TP +V Sbjct: 546 ALFRRTYEQMGKSELLIFVTPKVV 569 >gi|170699037|ref|ZP_02890094.1| general secretion pathway protein D [Burkholderia ambifaria IOP40-10] gi|170136073|gb|EDT04344.1| general secretion pathway protein D [Burkholderia ambifaria IOP40-10] Length = 770 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 112/310 (36%), Gaps = 50/310 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236 + V++ L+ A QV ++ I E+ +G Q + + AA G Sbjct: 392 RSVIDQLD-ARRAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLAAAAGNVAGNS 450 Query: 237 -----------------KFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPT 276 + ++ + + F +L + L+ P Sbjct: 451 IINLTTGGTAATTGIAANLANLNQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPN 510 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRI 328 L + + A G T S S + T D G+ LH P + G + Sbjct: 511 LITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGIL 570 Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L++ TE S V G NA P++ R +T+ +G IVL GL++D+ Q +PL Sbjct: 571 KLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPL 630 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L IP +G LFR+ R++T + + P ++ S A+ NR Sbjct: 631 LGDIPWIGQLFRSESKQRQKTNLMVFLRPVII---------------SDRSTAQEVTANR 675 Query: 448 VNKIYGPKEA 457 + I G A Sbjct: 676 YDYIQGVTGA 685 >gi|220915798|ref|YP_002491102.1| type IV pilus secretin PilQ [Anaeromyxobacter dehalogenans 2CP-1] gi|219953652|gb|ACL64036.1| type IV pilus secretin PilQ [Anaeromyxobacter dehalogenans 2CP-1] Length = 887 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 103/259 (39%), Gaps = 35/259 (13%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSG---PSKSFAADFGGKFVSEGG 243 QV ++ I E + +Q+G Q TG+ +G P+ A G+ ++G Sbjct: 618 PQVLIESRIVEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQAPNQGT 677 Query: 244 D----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + F+ L ALE ++T++ P + I Sbjct: 678 SSTPNYAVNLPAAIGQGSGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATID 737 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 + A+ G + S+S + T + + L TP V + G I L+I+ + P Sbjct: 738 NKEATIGQGISIPFSQTSAS--GVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNS 795 Query: 342 GVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + PS R+A+T V + G T V+ G+ +P LSKIP+LG FR+ Sbjct: 796 SLTGSNGQPSISKREAETEVLVKDGETTVIGGIYTRSTASKTASVPFLSKIPLLGFFFRS 855 Query: 401 SRFNREETEIFIAATPFLV 419 + TE+ I TP ++ Sbjct: 856 DTNTDDHTELLIFITPRIL 874 >gi|206891200|ref|YP_002248265.1| PilQ [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743138|gb|ACI22195.1| PilQ [Thermodesulfovibrio yellowstonii DSM 11347] Length = 663 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 97/257 (37%), Gaps = 29/257 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITG----------------------SSSGPSKSF 230 Q+ L+ I E+ K +GF+ I S G + Sbjct: 405 TRQILLEARIIEMSSSFSKSLGFEWGIQWYPPGTRTTIVGSVGAAAGSSASSVPGGTAPL 464 Query: 231 AADF---GGKFVSEGGDFSVKGV--LDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 A + G S F++ + + + + AL+++ + ++ P + + Q A Sbjct: 465 AINLPASTGNVTSPTTAFTIGYLNPSQTIALDLRISALQQSGKGKVISNPKVITLDNQKA 524 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 G Y +G S D + + TP ++ + L + + V VN Sbjct: 525 KIVQGASIPYGEKDVQSGQISTKFKDVAITVEATPHLIDDKSMLLDVSVIKEDLVEFVNI 584 Query: 346 GDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 G + P + +T V L G T+V+ G+ K + +P L +P+LG LF++ Sbjct: 585 GGVYAPRTTKIEGNTKVSLKDGETLVIGGIYKKTDSLTESKVPGLGDVPLLGELFKSRGR 644 Query: 404 NREETEIFIAATPFLVK 420 + E+ I TP ++K Sbjct: 645 DETLYEVMIFVTPRILK 661 >gi|54302288|ref|YP_132281.1| putative pilus assembly transmembrane protein [Photobacterium profundum SS9] gi|46915710|emb|CAG22481.1| putative pilus assembly transmembrane protein [Photobacterium profundum SS9] Length = 217 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 12/190 (6%) Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 AISG+ A F SGG+ + ++ ++GV L F PTV+S I L + EVS Sbjct: 1 MAISGEEAEFISGGEFPIPVPNDEN--ITIEFKEFGVALKFIPTVMSADSINLALNIEVS 58 Query: 338 ----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 P +PS R A TTVEL +G TI +AGLL ++I + E +P Sbjct: 59 EISNQNAVSIRPSGTNTQFFVPSLSKRGAKTTVELGNGQTIGIAGLLNENITDVVEKLPG 118 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L +PI+G LFR+ F + ETE+ I TP L KPV +D++ P D++ +D + + R Sbjct: 119 LGDLPIIGQLFRSQSFRKGETELVILVTPRLAKPVRKQDITLPTDNFVEPNDWEYYLLGR 178 Query: 448 VNKIYGPKEA 457 ++++ + A Sbjct: 179 MSELKRNEPA 188 >gi|320181011|gb|EFW55932.1| General secretion pathway protein D [Shigella boydii ATCC 9905] Length = 686 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 111/296 (37%), Gaps = 44/296 (14%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSS 223 Q S + V+ L+I QV ++ I EV G Q + + Sbjct: 340 TAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAEGSNINFGVQWASKDAGLMQFANGT 398 Query: 224 SGPSKSFAADF-------GGKFVSEGGDFSVKGVLDR---------------------FS 255 P + A G +SE G ++ + Sbjct: 399 QIPIGTLGAAISQAKPQKGSTVISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGD 458 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTH 310 + ++ A++ ++ L+ P++T + Q A F G T S+ S +V Sbjct: 459 WMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERK 518 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 G++L TP + + + I+ EVS+ + + + RK TTV G IVL Sbjct: 519 KVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVL 576 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 GL+ D + +PLL IP++G LF+++ +E+ + + P +++ D Sbjct: 577 GGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAAD 632 >gi|238764794|ref|ZP_04625736.1| General secretion pathway protein D [Yersinia kristensenii ATCC 33638] gi|238696992|gb|EEP89767.1| General secretion pathway protein D [Yersinia kristensenii ATCC 33638] Length = 635 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 103/252 (40%), Gaps = 12/252 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----FAADFGGK 237 +V+ L++ QV ++ I E + +G + + A+ + Sbjct: 326 DQVIEKLDVR-RAQVLVEAIIVETQNGEGLNLGIKWANKFHGGVNFLQNPDRIRANNNSE 384 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + +++ + AL + LA P++ + A F G + T Sbjct: 385 NPIPTVISGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 444 Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDM-PS 350 + +T S++ GV+L P + + L I+ EVS G NA ++ Sbjct: 445 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSGTNANNLGSV 504 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+V+ GLL + ++ +P L IP++G LF+ + N E++ + Sbjct: 505 FNKRVVNNAVLVKSGETVVVGGLLDKKLSKVINKVPFLGDIPLIGRLFQQRKENIEKSNL 564 Query: 411 FIAATPFLVKPV 422 + P +++ Sbjct: 565 ILFIRPTILRET 576 >gi|226943724|ref|YP_002798797.1| general secretion pathway protein D [Azotobacter vinelandii DJ] gi|226718651|gb|ACO77822.1| general secretion pathway protein D [Azotobacter vinelandii DJ] Length = 752 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 90/482 (18%), Positives = 177/482 (36%), Gaps = 43/482 (8%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISI--GLNKVIILQVPVDVQD--VLVSDPTKA 77 S+A P A+ + V +G +S L V++L++ +Q V +DP Sbjct: 276 SLAISPVYASADELGTALVKVLQAEGYDVSENPPLGGVVVLKLKE-LQRLIVFAADPAIL 334 Query: 78 D-----VVVHS-------PRTMYLF----GKNVGQANVI-LIGHDGKQM---LNLDILIE 117 V + ++L+ + G A+++ +G+ LN + Sbjct: 335 ATARQWVELLDRQSQEQVENGLFLYQVRNTQAAGIASMLGALGYSATIPDTGLNTSNTVT 394 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTV-VLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 A +L ++ + + + V+ + + G Q Sbjct: 395 PTGASTGESLATSGPIRSVTGTGANARASAPTSIAGNPEQGSVVVDANRNAIIYKGSGQE 454 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 ++ L+ V + V +AEV + + +G + +G S FG Sbjct: 455 WLKLRP-LLEELDRPVPS-VIIDVLLAEVNLNDREGLGVDWQ---NITGSLGSKQLIFGT 509 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 ++ + + L+A + P L SG+ A+ G + Sbjct: 510 ANGIGSSGLNISALNSAGQTKATLNAFYDNNQAVIRSSPKLMVRSGEEATIEVGNEIPVV 569 Query: 297 TVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM- 348 T ++ + T +V GV+L+ PTV + G + L+I E+SE + Sbjct: 570 TGTTQSTDTDNAPITQTVQYRKTGVLLNIKPTVQASGVVDLKISQELSESTDTGTGDTLT 629 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P R+ +T + L GG+++LAGL+ + G+PLL +P +G LF++ + T Sbjct: 630 PIINNRRVETALTLRDGGSVMLAGLISSSKGKGDNGVPLLGDLPWIGNLFKSQSNSETRT 689 Query: 409 EIFIAATPFLVKP-VAMRDLS---RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 E+ + P++V+ +DLS R + D + +R+ Y P Sbjct: 690 ELIVMIIPYVVRDFDEAQDLSRTYREQLSLNNSDSLERRGDHRLPPAYAPHATETPPAPA 749 Query: 465 YK 466 ++ Sbjct: 750 HR 751 >gi|332702379|ref|ZP_08422467.1| general secretion pathway protein D [Desulfovibrio africanus str. Walvis Bay] gi|332552528|gb|EGJ49572.1| general secretion pathway protein D [Desulfovibrio africanus str. Walvis Bay] Length = 677 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 77/336 (22%), Positives = 124/336 (36%), Gaps = 29/336 (8%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR---TIQDSQRAVELSETFLSQSGRN 174 D L L + + G+V + + A + + + + +G + Sbjct: 296 ADATELADVLNGLVGKTTGSAAAGGQAPKESGVVTPVISSGVTILADKATNSLVITAGAD 355 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL------KQIGFQHSITGSSS-GPS 227 + + ++++ L+ QV ++ I EV Q I G Sbjct: 356 DF--TLIEELLRDLDTP-RKQVLVEALIMEVSSTENVEFGSKLQGVVDVGIGGREGVAGG 412 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETV----LHALERATAIR----TLAEPTLTA 279 S A ++ G F + + V L+AL A I ++ P + Sbjct: 413 FSNPAGLSESVLNPGTVFGIGAAAIPVTINGVTYTNLNALIAAGKINSDFNIISTPQIMT 472 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + Q AS T Y+T +ST T T D G +L TP + G I L+I Sbjct: 473 LDNQEASITVAENRPYQTSQTSTLNDLNNIVTQFTYRDVGTILKLTPQINEGGMIKLKIF 532 Query: 334 TEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 E SE +P R R +T V + G T+VL+GL+ +PLL IP Sbjct: 533 QEFSEVDQAATGVSTLPVTRKRTTETAVVIREGQTVVLSGLIGKSATSSSSRVPLLGDIP 592 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDL 427 +LG LFR +T + + TP +V P +DL Sbjct: 593 LLGWLFRYDTREERKTNLLVFITPRVVDSPEKAQDL 628 >gi|163783780|ref|ZP_02178765.1| hypothetical protein HG1285_09976 [Hydrogenivirga sp. 128-5-R1-1] gi|159880969|gb|EDP74488.1| hypothetical protein HG1285_09976 [Hydrogenivirga sp. 128-5-R1-1] Length = 550 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 18/243 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFV----- 239 QV ++ I EVR+++++++G S S G + G Sbjct: 308 PPQVKIEARILEVRKEVVRELGINWSALLSNAKVQQSWSGGAGVNLGVGQAGAITPSLSA 367 Query: 240 SEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + GG + + L A ER I++LA+PT+ I+GQ+A G + Y+T Sbjct: 368 TPGGILTFTYAKGALNALNLRLSAFERLGKIKSLAKPTIVTINGQNAVIKQGQEIPYQTA 427 Query: 299 SSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 + G++ S+ + + L+ P + GRI L ++ + P + G P+ ++ Sbjct: 428 VIAGGSSVPSIQFKEAVLELNVLPIISPDGRILLDMELKQEIPGVQTPIG--PTIIKKQV 485 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V + +G TIV+ G++ + KEG+ L ++PIL LF + ++ E+ I TP Sbjct: 486 STKVIVNNGDTIVIGGIIDSLNRNTKEGVAGLVRVPILKWLFGQESKHIQDIELLIFITP 545 Query: 417 FLV 419 ++ Sbjct: 546 SII 548 >gi|17548364|ref|NP_521704.1| putative GSPD-related protein [Ralstonia solanacearum GMI1000] gi|17430610|emb|CAD17294.1| putative gspd-related protein [Ralstonia solanacearum GMI1000] Length = 754 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 84/410 (20%), Positives = 151/410 (36%), Gaps = 55/410 (13%) Query: 53 GLNKVIILQVPVDVQ-DVLVSDPTKADVV------------VHSPRTMYLFGKNVGQANV 99 GLN V V D + V + + T A+VV V ++ ++ Sbjct: 206 GLNFVFDKDVRTDQKVTVFLRNSTVANVVNTVLLTNQLEQRVLDGNSILIYPNTP----- 260 Query: 100 ILIGHDGKQMLNLD-ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 D + + +L D + T++ + +I V+ + +V+ IQ ++ Sbjct: 261 -AKQRDYQPLTVRTFVLSNSDAKDVANTVKTILKTRDIVVDEKRNMIVMRDTPDAIQAAE 319 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + V + E E +V L+V I EV+R L+ +G Q Sbjct: 320 KLVAVHEM-------------------------PEPEVMLEVEILEVKRSRLQDLGIQLP 354 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 S + + S + + + + ++ T LA P + Sbjct: 355 SQLSLTPLASSSGGTLTLDDLRHLNPTRIGATVSPLN----VNVNAAVTDTNVLANPRVR 410 Query: 279 AISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + + A G + T +S+ A +V D G+ L PTV + +RI E Sbjct: 411 TRNKEKARIQVGQRVPNVTTTSTATGFVAENVQYVDVGLKLEVEPTVTPDNEVTIRINLE 470 Query: 336 VSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 VS+ + V R A T + L G +LAGL++D+ + +P L IP Sbjct: 471 VSDIISQVQTKSGSIAYEIGTRNATTLLRLKDGENQILAGLIQDEDRVSGNRVPGLGDIP 530 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 LG LF N+ ++EI ++ TP +++P +L + E + Sbjct: 531 ALGRLFGAQSDNKLKSEIVLSITPRVIRPAQRPNLGSAEFDSGTESSLRL 580 >gi|332524328|ref|ZP_08400549.1| fimbrial biogenesis protein [Rubrivivax benzoatilyticus JA2] gi|332107658|gb|EGJ08882.1| fimbrial biogenesis protein [Rubrivivax benzoatilyticus JA2] Length = 719 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 106/275 (38%), Gaps = 42/275 (15%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------------------- 220 +++ ++I QV ++ I E + +G + Sbjct: 442 QLIAKIDIP-VRQVMIEARIVEADDTFGRALGVKLGANAAPKFYNNGGVGVGVGGNYDDV 500 Query: 221 GSSSG----------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 G +G P+ +++F G + S+ L ALE Sbjct: 501 GYQTGQLLKDPGFNSTQFVNLPANISSSNFSGVTSAPTFAVSLFNSSLTRFLNLELSALE 560 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + ++ P + + A G + Y+ S+S+GATS++ + L TP + Sbjct: 561 ADGKGKIVSSPRVITADQEKALIEQGEELPYQE-STSSGATSISFRKASLKLEVTPQITP 619 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G + L + +V++ +G + + + T V + +GGT+V+ G+ Sbjct: 620 EGNVILDV--DVNKDSVGRSTAAGFAIDTKHVKTKVLVENGGTVVIGGIYTQSESTDVSK 677 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL IP LG LFR++ +TE+ + TP +V Sbjct: 678 VPLLGDIPGLGVLFRSTTRTSSKTELLVFLTPKIV 712 >gi|292493847|ref|YP_003529286.1| type IV pilus secretin PilQ [Nitrosococcus halophilus Nc4] gi|291582442|gb|ADE16899.1| type IV pilus secretin PilQ [Nitrosococcus halophilus Nc4] Length = 699 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 99/266 (37%), Gaps = 31/266 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+I QV ++ I D K +G + ++ G Sbjct: 433 RKLVARLDIP-VRQVLIESRIVIANSDFSKDLGIRFGLSKREDTGGAFDEVVTSGSLNGT 491 Query: 242 GG---------------------------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274 ++ + E L AL+ ++ Sbjct: 492 TQIINRETLELQDRMNVNLPVTRQDAARIALALTKLPLGNLLELELSALQAEGRGEVISN 551 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + + A G + ++ +SS GATSV+ + L P + RI + + Sbjct: 552 PRVITSNQNEALIEQGTEIPFQQATSS-GATSVSFKKAVLSLKVVPQITPDDRIIMDLT- 609 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 V++ +G +PS R+ T V + +G T+VL G+ + + + +P L +P + Sbjct: 610 -VNKDSVGQVFNGVPSIDTREVATQVLVDNGQTVVLGGIYEQEQNRASRRVPFLGDLPYV 668 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G LFR+ + E+ I TP ++K Sbjct: 669 GTLFRDKSEVNNKDELLIFVTPKIIK 694 >gi|319761560|ref|YP_004125497.1| type iv pilus secretin pilq [Alicycliphilus denitrificans BC] gi|330823429|ref|YP_004386732.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans K601] gi|317116121|gb|ADU98609.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans BC] gi|329308801|gb|AEB83216.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans K601] Length = 713 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 109/276 (39%), Gaps = 42/276 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ------------------------- 216 +K++ L++ QV ++ I E R + +G + Sbjct: 435 RKLLLTLDVP-VRQVMIEARIVEARDTFGRSLGVRLGGGDLRANRGGDGGYSIGGGNRAA 493 Query: 217 HSITGSSSGPSKSF--AADFGGKFVSEGGDFSVKGVLDRFSFE-----------TVLHAL 263 S++ S F A + GG FV+ S + F+ L A+ Sbjct: 494 WGTNYSNATNSAGFGDAVNVGGNFVNLPASLSNVTGVGSFALSIFNSAANRFLTLELSAM 553 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E + ++ P L A G ++ Y +V++ GAT++ + L P + Sbjct: 554 EADGQGKVVSSPRLITADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVVPQIT 612 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G I L + +V++ G + + + T V + +GGT+V+ G+ + + + Sbjct: 613 PEGNIILDL--DVNKDSRGESTTQGVAIDTKHIKTQVLVENGGTVVIGGIFELEETNQEN 670 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IPLL +P++G LF++ + E+ + TP ++ Sbjct: 671 KIPLLGDVPVMGNLFKSRTKESSKREMLVFITPKVI 706 >gi|86157073|ref|YP_463858.1| type II and III secretion system protein, secretin [Anaeromyxobacter dehalogenans 2CP-C] gi|85773584|gb|ABC80421.1| type II and III secretion system protein, secretin [Anaeromyxobacter dehalogenans 2CP-C] Length = 882 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 101/259 (38%), Gaps = 35/259 (13%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSFAADFGGKFVSEGG 243 QV ++ I E + +Q+G Q S + P+ A G+ ++G Sbjct: 613 PQVLIESRIVEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQAPNQGT 672 Query: 244 DFS----------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + F+ L ALE ++T++ P + I Sbjct: 673 SATPNYAVNLPAAIGQGAGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATID 732 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 + A+ G + S+S + T + + L TP V + G I L+I+ + P Sbjct: 733 NKEATIGQGISIPFSQTSAS--GVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNS 790 Query: 342 GVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + PS R+A+T V + G T V+ G+ +P LSKIP+LG FR+ Sbjct: 791 SLTGSNGQPSISKREAETEVLVKDGETTVIGGIYTRSTASKTAAVPFLSKIPLLGFFFRS 850 Query: 401 SRFNREETEIFIAATPFLV 419 + TE+ I TP ++ Sbjct: 851 DTNTDDHTELLIFITPRIL 869 >gi|294142972|ref|YP_003558950.1| general secretion pathway protein D [Shewanella violacea DSS12] gi|293329441|dbj|BAJ04172.1| general secretion pathway protein D [Shewanella violacea DSS12] Length = 712 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 112/284 (39%), Gaps = 47/284 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFV 239 V+N L+I QV ++ I EV G Q + + G G V Sbjct: 336 DSVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGIQWATASGGGTQFNNLGPTIGEIGAGV 394 Query: 240 ------------------------------------SEGGDFSVKGVLDRFSFETVLHAL 263 + G + + F ++ A+ Sbjct: 395 WLAKDQKASQTCTGSGDNKTCTDNPDTPGDITLLAQALGKVNGMAWGVATGDFAALIQAV 454 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLH 317 T LA P++T + Q ASF G + T S S+ T+V + GV L Sbjct: 455 SSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSQSSSNGNENPFTTVERKEVGVKLK 514 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + + L I+ EVS + G A D+ ++ R+ TTV SG +VL GL+ ++ Sbjct: 515 VIPQINEGSSVKLTIEQEVSG-INGKTAVDV-TFATRRLTTTVMADSGQIVVLGGLINEE 572 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +Q+ + +P L +P++G LFR+S ++++ + I P +++ Sbjct: 573 VQESVQKVPFLGDLPLIGHLFRSSSSSKKKKNLMIFIKPTIIRD 616 >gi|152980977|ref|YP_001355054.1| PilQ type IV pilus assembly protein [Janthinobacterium sp. Marseille] gi|151281054|gb|ABR89464.1| PilQ type IV pilus assembly protein [Janthinobacterium sp. Marseille] Length = 686 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 94/249 (37%), Gaps = 25/249 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIG------FQHSITGSSSGPSKSFAADFGGKFVSEGG--- 243 QV ++ I E +G Q+ G S G + Sbjct: 434 TRQVMIEARIVEADDKFSSSLGAKLSFGVQNQGNYQLGGRQTSTTTAIGPPTLGGSAVNL 493 Query: 244 -----DFSVKGVLDRFSFETV--------LHALERATAIRTLAEPTLTAISGQSASFTSG 290 + + G + F L ALE + ++ P + A G Sbjct: 494 PASTINSNTPGSVALTLFNAAATRFIGLELSALEADGKGKVISSPRVITADQLKALIEQG 553 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y+ +SS GATSV+ + L TP + G + L + +V++ +GV + Sbjct: 554 TELPYQQATSS-GATSVSFRKANLKLEVTPQITPDGNVILDV--DVNKDTVGVETRSGFA 610 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ + + +P IP+ G LF+ + ++TE+ Sbjct: 611 IDTKHVKTQVLIDNGGTVVIGGIFQQTERDSVSKVPFFGDIPVFGNLFKTTGRTNDKTEL 670 Query: 411 FIAATPFLV 419 I TP ++ Sbjct: 671 LIFLTPKIL 679 >gi|120600493|ref|YP_965067.1| general secretion pathway protein D [Shewanella sp. W3-18-1] gi|120560586|gb|ABM26513.1| general secretion pathway protein D [Shewanella sp. W3-18-1] gi|319424804|gb|ADV52878.1| general secretion pathway protein D [Shewanella putrefaciens 200] Length = 705 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 109/284 (38%), Gaps = 47/284 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394 Query: 236 -----------------GKFVSE----------------GGDFSVKGVLDRFSFETVLHA 262 G V+ G + + F ++ A Sbjct: 395 WQAQDKEGDTVTTLDGNGNPVTTKNPDTRGDVTLLAQALGKVNGMAWGVAMGDFGALIQA 454 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317 + T LA P++T + Q ASF G + T S+++ +V + GV L Sbjct: 455 VSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLK 514 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + + L I+ EVS + N G S+ R+ TTV SG +VL GL+ ++ Sbjct: 515 VVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEE 572 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +Q+ + +P L IP+LG LF++S + + + I P +++ Sbjct: 573 VQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIRD 616 >gi|149925604|ref|ZP_01913868.1| type II and III secretion system protein [Limnobacter sp. MED105] gi|149825721|gb|EDM84929.1| type II and III secretion system protein [Limnobacter sp. MED105] Length = 807 Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 122/314 (38%), Gaps = 49/314 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----------ITGSSSGPSKSF 230 + ++ L++ QV ++ I EV D + G Q + G ++ Sbjct: 423 RSIIEKLDVR-RAQVFVESLIVEVSTDKAAEFGIQFQGLSGVGADGVRVIGGTNFNDPGS 481 Query: 231 AADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 ++ G + G G ++ G+ + + ALE L+ P + Sbjct: 482 GSNILGAATNLGSVGRGLNIGVIDGQVNIPGIGTISNLGFLARALESKANANILSTPNIL 541 Query: 279 AISGQSASFTSGGQHLYKTV----SSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIG 329 + + A G + T S GAT ++ D G+ L P V G + Sbjct: 542 TLDNEEAKIVIGQNVPFITGQFTNSGGNGATVNPFQTIERQDVGLTLRVKPQVSEGGIVK 601 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 L I EVS V N + + R ++ V + +G IVL GL++D + +E +P L Sbjct: 602 LGIFQEVSSVVDSTNVSGIIT-NKRSIESNVLVETGNIIVLGGLVEDRVTGNEEKVPGLG 660 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 +P+LG FR R++T + + P +V+ ED A++ NR + Sbjct: 661 DVPVLGQFFRYDNRRRQKTNLMVFLRPVVVRN---------------EDQAQSIVTNRYD 705 Query: 450 KIYGPKEASEVEGQ 463 + ++ ++ E + Sbjct: 706 YMRQLQQENQPEKR 719 >gi|187925571|ref|YP_001897213.1| type IV pilus secretin PilQ [Burkholderia phytofirmans PsJN] gi|187716765|gb|ACD17989.1| type IV pilus secretin PilQ [Burkholderia phytofirmans PsJN] Length = 591 Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 91/238 (38%), Gaps = 11/238 (4%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------GKFVSEG 242 QV ++ I E + +G + S+ +++ + D G F Sbjct: 355 RPTRQVLIEARIVEGEHGFSRNLGVKLSMAATNADGTAKGLTDAGYDLSARPISGFDVAT 414 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 ++ L ALE ++ P + A G + Y+ Sbjct: 415 AGLTLFAAGATRLLNIELSALEAQGRGEIVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQ 473 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 G + V + L P ++ GR+ L + +AG P+ + T VE+ Sbjct: 474 GVSGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGEQTDAG--PAINTKHVQTRVEV 531 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GGT+ + G+ D + +P+L KIP+LGALFR+ + +E+ + TP +V+ Sbjct: 532 EDGGTVSIGGIYATDDRDDVTRVPVLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 589 >gi|220921783|ref|YP_002497084.1| general secretion pathway protein D [Methylobacterium nodulans ORS 2060] gi|219946389|gb|ACL56781.1| general secretion pathway protein D [Methylobacterium nodulans ORS 2060] Length = 784 Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats. Identities = 70/260 (26%), Positives = 123/260 (47%), Gaps = 19/260 (7%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 A QV + VTIAEVR + + G Q+ + S G K+ FG + G +V Sbjct: 508 ATPAQVAVNVTIAEVRLNDQLKYGVQYFLDSSRIGLGKN-KGSFGLVSAAATGATNVLKP 566 Query: 251 LDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F+F + V+ AL+ T ++ L+ P+L + Q A+ G T + + Sbjct: 567 GAGFNFLVGGYSGPDVVISALDGFTDVKVLSSPSLVVLENQPATLQVGDSVPITTRQAQS 626 Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 V D G++L+ P + + ++I+ E+S V G + P+ R+ Sbjct: 627 IDYANAPLINQVEFRDTGIILNVIPRIGQNDAVTMQIEQEISAVVGGSDTLT-PTISKRR 685 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +T+ + +G T++LAGL+ D Q+ ++GIP L+++P +G LF ++ E TE+ + Sbjct: 686 VASTISVANGQTVLLAGLISDKHQRERDGIPFLNRLPQIGQLFSSTDNGAERTELVVFIR 745 Query: 416 PFLVKPVAMRDLSRPDDHYS 435 P +V+ RD R + Y Sbjct: 746 PVVVRN--GRDAQRVAEDYR 763 >gi|148977866|ref|ZP_01814421.1| MSHA biogenesis protein MshL [Vibrionales bacterium SWAT-3] gi|145962935|gb|EDK28206.1| MSHA biogenesis protein MshL [Vibrionales bacterium SWAT-3] Length = 549 Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats. Identities = 71/323 (21%), Positives = 119/323 (36%), Gaps = 33/323 (10%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 ++E ++ G +++ + +A ++ R ++ + + + QV Sbjct: 223 QLEAAVAHLIGSGNGQSVVVTPQASVITVRAFPDEIRE------VREFLGVSQQRLQRQV 276 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VL 251 L+ I EV Q GF S S G S+ G + Sbjct: 277 ILEAKIMEVTLSDGYQQGFSWSNLSKSIGSGGVVIDRPASTLPPLDAISSLLGGQTNVTI 336 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGAT- 305 SFE VL ++ + L+ P +TA + Q A G Y T V S A Sbjct: 337 SDGSFEAVLSFMDTQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSAVGSGDNANV 396 Query: 306 ----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPS 350 +T G+ L TP + G + L + V E GV + Sbjct: 397 APEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEKEVKKLNLGSTTGVVELPLAK 456 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++D+ + G +V+ GL+K + + +P L IP LG LFRN+ ++TE+ Sbjct: 457 SSIRESDSVIRARDGDVVVIGGLMKSNTSDVTSKVPFLGDIPALGHLFRNTNQLTQKTEL 516 Query: 411 FIAATPFLVK-PVAMRDLSRPDD 432 I P +V +L R D Sbjct: 517 VILLKPTVVGVNTWQSELERSRD 539 >gi|296314608|ref|ZP_06864549.1| type IV pilus secretin PilQ [Neisseria polysaccharea ATCC 43768] gi|296838653|gb|EFH22591.1| type IV pilus secretin PilQ [Neisseria polysaccharea ATCC 43768] Length = 505 Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 108/261 (41%), Gaps = 23/261 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K+++ L++ QV ++ I E + +G + TG A +G E Sbjct: 238 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFE 296 Query: 242 GGD-------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 GGD S+ + + L A E + +TLA P + + Sbjct: 297 GGDGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNR 356 Query: 283 QSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + A SG + Y+ + S S+ +T+ T + L TP + G+I + ++ PV Sbjct: 357 KEAKIESGTEIPYQDTSSSGSSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPV 416 Query: 341 I-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 V + + +T + +GGT+++ G+ +++ +PLL IP++G LF+ Sbjct: 417 DCTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFK 476 Query: 400 NSRFNREETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 477 TRGKSTNRRELLIFITPRIMD 497 >gi|260550835|ref|ZP_05825042.1| type II secretory pathway [Acinetobacter sp. RUH2624] gi|260406145|gb|EEW99630.1| type II secretory pathway [Acinetobacter sp. RUH2624] Length = 721 Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 108/281 (38%), Gaps = 39/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 +K+++LL++ QV ++ I K++G + I +K+ Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVGGSETTLWN 501 Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 D G + F + + D F + L AL+ Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 560 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325 ++ P + Q+A +G Q Y+T ++S ++ + D + L+ TP++ Sbjct: 561 YGEVISTPKVMTADKQTAKVATGQQVPYQTTTNSAAGSTATTSFKDALLSLNVTPSITPD 620 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G+I +++ G++ +T V + +G T++L G+ + + + Sbjct: 621 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTTNSQTKV 679 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 680 PFFGDIPVVGHLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720 >gi|16124428|ref|NP_418992.1| general secretion pathway protein D [Caulobacter crescentus CB15] gi|221233111|ref|YP_002515547.1| type II secretion pathway protein D [Caulobacter crescentus NA1000] gi|13421292|gb|AAK22160.1| general secretion pathway protein D [Caulobacter crescentus CB15] gi|220962283|gb|ACL93639.1| type II secretion pathway protein D [Caulobacter crescentus NA1000] Length = 687 Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats. Identities = 62/292 (21%), Positives = 118/292 (40%), Gaps = 41/292 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------------ 224 +V+ L++ +QV ++ + EV KQ+G Q + G++ Sbjct: 355 EVIRQLDVR-REQVLVEAIVVEVTDGTAKQLGVQFLLGGTNGTIPFVATNYTNATPSLLP 413 Query: 225 --GPSKSFAAD-------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 G + + + + G V G F +++A+++ T Sbjct: 414 LVGAAATTTSGADTEALKSLRDAAVSSLLTASGVTSGVVGRSGDALFGAIINAVKKDTGS 473 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLS 324 L+ P++ + + A G + T S++ ++ + G+ L P + + Sbjct: 474 NLLSTPSIMTLDNEEARILVGQEVPITTGEVLGDSNANPFRTIQRQNVGIQLEVKPQINA 533 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G I L ++ EVS V+ G R+ +TT + G +VL GLL Q + Sbjct: 534 GGGITLFLRQEVSSVAGPVSVGSSELIINKREIETTALVDDGDIVVLGGLLDQQETQSAQ 593 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY 434 P L +P LGALFR++ R++T + + P +++ A R+L+ P Y Sbjct: 594 RTPGLGDVPGLGALFRSTARERKKTNLMVFIRPRIIRSSADARNLTAPRYDY 645 >gi|107101302|ref|ZP_01365220.1| hypothetical protein PaerPA_01002336 [Pseudomonas aeruginosa PACS2] Length = 776 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 121/312 (38%), Gaps = 38/312 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231 + ++ L++ Q+ ++ I E+ +I +G Q ++ FA Sbjct: 340 EDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLL 398 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A GK +E D ++ G+ R F ++ AL R + L+ P+L + Q A G Sbjct: 399 GALQAGKPPAELPDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVG 457 Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 ++T S +T A T+V D GV L TP + + L I+ E+S Sbjct: 458 QNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTA 517 Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 R +TV G IVL GL++DD+ + +PLL IP +G LFR+ Sbjct: 518 TLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRS 577 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 SR R + + + P +V+ A + R I + A+ Sbjct: 578 SRETRVKRNLMVFLRPSIVRDAAG---------------LERISHGRYRSIQLLRGAAGE 622 Query: 461 EGQNYKGAIGFI 472 + G I Sbjct: 623 PARPLFEDAGAI 634 >gi|222099578|ref|YP_002534146.1| ComE protein [Thermotoga neapolitana DSM 4359] gi|221571968|gb|ACM22780.1| ComE protein [Thermotoga neapolitana DSM 4359] Length = 1282 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 113/262 (43%), Gaps = 6/262 (2%) Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V+ F+ +G ++ +++ L + QV + I V + ++ + + + Sbjct: 1026 VDSLNNFMVVTGISETIKKELDRIVENLKKPTK-QVEISAKI--VDKSLIDMVTKEMGLQ 1082 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 S +G S + V++ DF V + + T LA P + Sbjct: 1083 LSGTGVDLSSSGASISFSVTDYLDFEKVINEILNSPLSLQFSDQKSNTLDDILASPRIVT 1142 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 SG+ A G + Y T ++ G V + G+ L TP V S I L + + SEP Sbjct: 1143 TSGKEAKILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDDTIELDLFVKASEP 1202 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +N ++P R R+A T + + + TIV+ GL+++ + +P +P++G FR Sbjct: 1203 GNYIN--EVPGERTREATTHLIVKNNSTIVIGGLIREVTNMSESKLPFFGDLPVIGQFFR 1260 Query: 400 NSRFNREETEIFIAATPFLVKP 421 ++E+ ++ I T +V+P Sbjct: 1261 TKSESKEKRDLMIFVTVRVVEP 1282 >gi|15836975|ref|NP_297663.1| fimbrial assembly protein [Xylella fastidiosa 9a5c] gi|9105203|gb|AAF83183.1|AE003888_16 fimbrial assembly protein [Xylella fastidiosa 9a5c] Length = 637 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 104/259 (40%), Gaps = 29/259 (11%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI-------------------TGSSSGPSKSFA 231 DQV ++ I + +G + + SS+ ++ Sbjct: 370 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSHVTTADSSTSATRGLN 429 Query: 232 ADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 D GG + + + +F+ + L AL++ + ++ P + + + Sbjct: 430 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 489 Query: 289 SGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341 G + Y T++ +V + + L TPT+ + R+ L + E+ + + Sbjct: 490 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 549 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+ Sbjct: 550 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 609 Query: 402 RFNREETEIFIAATPFLVK 420 ++++ E+ I TP +++ Sbjct: 610 GKDKQKAELLIFVTPKVLR 628 >gi|160873279|ref|YP_001552595.1| general secretion pathway protein D [Shewanella baltica OS195] gi|160858801|gb|ABX47335.1| general secretion pathway protein D [Shewanella baltica OS195] gi|315265506|gb|ADT92359.1| general secretion pathway protein D [Shewanella baltica OS678] Length = 705 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 63/283 (22%), Positives = 110/283 (38%), Gaps = 46/283 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFV 239 + V+N L+I QV ++ I EV G Q + + G G + Sbjct: 337 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWASKSGLGTQFNNLGPTIGEIGAGI 395 Query: 240 SEGGDF------------------------------------SVKGVLDRFSFETVLHAL 263 + D + + F ++ A+ Sbjct: 396 WQAQDVKASQTCTGSGDNQTCTDNPDTKGDVTLLAQALGKVNGMAWGVAMGDFGALIQAV 455 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHF 318 T LA P++T + Q ASF G + T S+++ + +V + GV L Sbjct: 456 SSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSSNSNPFQTVERKEVGVKLKV 515 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + + L I+ EVS + N G S+ R+ TTV SG +VL GL+ +++ Sbjct: 516 VPQINEGNAVKLTIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVVLGGLINEEV 573 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 Q+ + +P L IPI+G LF++S + + + I P +++ Sbjct: 574 QESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKPTIIRD 616 >gi|261209946|ref|ZP_05924246.1| MSHA biogenesis protein MshL [Vibrio sp. RC341] gi|260841011|gb|EEX67543.1| MSHA biogenesis protein MshL [Vibrio sp. RC341] Length = 551 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 69/277 (24%), Positives = 111/277 (40%), Gaps = 41/277 (14%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233 ++V L I+ + QV L+ I EV + G S S++G + + A D Sbjct: 253 RQVTEFLGISQQRMQRQVILEAKILEVTLSDGYEQGINWSKAFSANGTNYQIGTGTIAQD 312 Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G +S GG +V V+ SFE VL + + L+ P +TA + Sbjct: 313 TNGNPISSILPGLDAIGTLLGGQSNV--VVSSGSFEAVLSFMSTQGDLNVLSSPRVTASN 370 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331 Q A G Y T SS T ++T G+ L TP + G + L Sbjct: 371 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDKGNVLLH 430 Query: 332 IQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + V ++P R +R++D+ + G +V+ GL+K + Sbjct: 431 VHPAVIEVEQQTKRITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDRV 490 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 491 AKVPFLGDVPGLGHLFRNTSKQTQKTELVILLKPTVV 527 >gi|303231123|ref|ZP_07317863.1| bacterial type II and III secretion system protein [Veillonella atypica ACS-049-V-Sch6] gi|302514254|gb|EFL56256.1| bacterial type II and III secretion system protein [Veillonella atypica ACS-049-V-Sch6] Length = 399 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 143/348 (41%), Gaps = 42/348 (12%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH---LEMTLRRFIADSNI 136 ++H MY F Q V + G G + +++E +A LE ++ + + Sbjct: 86 MLHHLGDMYHFDIQDNQGVVTVKGDSGTKEHRHVVVVEPKVASSTSLESVIKTVVPNGKF 145 Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 V ++ +VL+ + ++ + + QV Sbjct: 146 AVHKETNQIVLNVTGDEEKGVNSIIQSVDRDMK-------------------------QV 180 Query: 197 TLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 L+ TI + K+ GF+ S TG + + S+ A GK + Sbjct: 181 RLEATIMAMEHSYTKETGFRWSWLSLTGHGNDKTNSYGAITFGKAPDR--------EAYK 232 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHD 311 F + L LE + +A P++ A++G++A G + S S G S+ + Sbjct: 233 FFVKPELSLLETSGKAVVIATPSIVALNGEAAHILIGERIPVIEESISNGERKRSIHYEE 292 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G+ L +TP V G I I+ EVS P++ V+ R+A T V L G +V+ Sbjct: 293 VGIKLDYTPIVTKNGAIDTSIRAEVSSPIM-VSELKSYKITTRQAQTRVRLQPGEVLVIG 351 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GL+ + Q+ E IP+L IP+LG LFR+SR ++ E+ I +V Sbjct: 352 GLMDNRDQKQIEKIPVLGDIPLLGKLFRHSRKTKDSVEMVIFVKATVV 399 >gi|120554944|ref|YP_959295.1| general secretion pathway protein D [Marinobacter aquaeolei VT8] gi|120324793|gb|ABM19108.1| general secretion pathway protein D [Marinobacter aquaeolei VT8] Length = 649 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 57/269 (21%), Positives = 111/269 (41%), Gaps = 29/269 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 +++++ L++ QV ++ I E+ ++ Q+G Q + S+G + Sbjct: 334 QEAEQIVAQLDVR-RAQVMIEAAIVEISDELGDQLGVQLAAGDESAGSFPVLGTNLTSGQ 392 Query: 239 VSEGGDFSVKGVL--------------------DRFSFETVLHALERATAIRTLAEPTLT 278 G + + ++ D ++ ++ AL ++A L+ P++ Sbjct: 393 GMVGLNSVIGALVGDTIPQLAGGLTVGAGQRDEDGVTWGLLIQALSSSSAANLLSTPSII 452 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + Q + G ++T S+ T++ D G+ L TPT+ + G + L Sbjct: 453 TLDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERRDVGLSLKVTPTISADGLVRLV 512 Query: 332 IQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ V+ R+ TTV G T+VL GL+KDD Q K +PLL Sbjct: 513 VEQTTEDISTTSVDGASDLITNKREIKTTVLADDGETVVLGGLIKDDYQVSKSKVPLLGD 572 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP+LG LF + R + + + P ++ Sbjct: 573 IPVLGRLFSSESETRVKRNLLVFLRPTIM 601 >gi|269140603|ref|YP_003297304.1| Type II secretory pathway, component HofQ [Edwardsiella tarda EIB202] gi|267986264|gb|ACY86093.1| Type II secretory pathway, component HofQ [Edwardsiella tarda EIB202] gi|304560390|gb|ADM43054.1| Type IV pilus biogenesis protein PilQ [Edwardsiella tarda FL6-60] Length = 409 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 64/271 (23%), Positives = 108/271 (39%), Gaps = 7/271 (2%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 ++ AV T ++ + + L++ QV L I + ++ L+++G Sbjct: 133 EAGSAVADIRTNALLLRAEAARLAALRDWIAQLDVPLS-QVQLAAHIVSISQEGLRELGI 191 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + SG G F V + + + L ALER + +A P Sbjct: 192 RWYSGDERSGGQDRLR---GAADAYFSAGFQVARIGGQ-TLAVALAALERQDKVAIIASP 247 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L A GQ+AS G + Y G +++ + + + TP VL+ I L +Q Sbjct: 248 HLMAAHGQTASIKQGSELPYAVSGGERGVSTMEFKEAVLGMSVTPRVLADAHIELALQIS 307 Query: 336 VSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + P V GD + ++ T V L G T +L G+ + Q G P L+ +P+ Sbjct: 308 QNMPGRVVRQGDSEALAIDKQEITTQVTLSDGDTAMLGGIFQYQRQVDSIGFPWLADVPL 367 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM 424 LG L R+ E+ I TP L+ P + Sbjct: 368 LGHLLRSDSQRSGRRELVIFITPTLLSPASP 398 >gi|78224554|ref|YP_386301.1| type II and III secretion system protein:NolW-like [Geobacter metallireducens GS-15] gi|78195809|gb|ABB33576.1| type II and III secretion system protein:NolW-like protein [Geobacter metallireducens GS-15] Length = 636 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 14/251 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------GG 236 +V+ L+ QV ++ IAEV D K++G Q +++G + + + A F GG Sbjct: 350 QVIQKLDKR-RRQVFVQAVIAEVSLDKAKELGLQLAVSGGGTAGNTAEAGVFDPFNFVGG 408 Query: 237 KFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + +V VL AL A+ L+ P + + A G Sbjct: 409 ASPQQAAILNVLTGFAGSSNLQLGGVLKALISNGAVNVLSTPNILTSDNKEAEIFVGENV 468 Query: 294 LYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 + T S+ S+ D G+ L TP + + L I E+S V Sbjct: 469 PFLTQTNLTSTGLSQQSIERKDTGITLRITPQISEGEFVKLDIYQEISAVKDSVGQAKDL 528 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R A T V + T+V+ GL++D + IP+L IP+LG F+ RE+T Sbjct: 529 VTTKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPILGDIPLLGWFFKTKSARREKTN 588 Query: 410 IFIAATPFLVK 420 + I TP +++ Sbjct: 589 LMIVLTPRIIR 599 >gi|309389127|gb|ADO77007.1| type II and III secretion system protein [Halanaerobium praevalens DSM 2228] Length = 629 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 70/323 (21%), Positives = 132/323 (40%), Gaps = 44/323 (13%) Query: 108 QMLNLDILIER-DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + +I ++ D + + +F + + V ++++G ++ ++ E Sbjct: 252 EPETRNIRVDYVDTEQISEIVGKFYPEIKLHVNAKRKEIIING-------AKNKLDGVEE 304 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +++ + QY QV ++ + E+ D +++G H+ G + Sbjct: 305 LINEINKPQY------------------QVVIETRVEEISSDFSRELGIDHTDGGIFNII 346 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 +S G + E D+S V AL+ +T +TLA P L ++G+ A+ Sbjct: 347 KESTNNADGESYKIEKLDYSWPDVF---------KALDTSTDTKTLASPKLMTLNGEEAN 397 Query: 287 FTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340 + + YK V++ + TS + GV L FTP + I L I VS Sbjct: 398 LSILEEKPYKVVNTDSNGEKTTSWEYAEAGVELTFTPWISKNNEIELEIAPTVSSFSEIA 457 Query: 341 ---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G P+ + R +TT+ L T + GL++ D + IPLL +P+ G L Sbjct: 458 DSQTGEGESPPPAKKSRSVETTLRLKDNETFAVGGLIQTDKEGKITKIPLLGDLPLFGEL 517 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F+ + E+ I TP ++K Sbjct: 518 FKFREPSDSTNELIIFVTPHIIK 540 >gi|83648610|ref|YP_437045.1| type 4 fimbrial biogenesis protein PilQ [Hahella chejuensis KCTC 2396] gi|83636653|gb|ABC32620.1| type 4 fimbrial biogenesis protein PilQ [Hahella chejuensis KCTC 2396] Length = 720 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 100/272 (36%), Gaps = 50/272 (18%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---------------------------------- 220 QV ++ I R D ++++G Q T Sbjct: 445 QVLIEARIVRARSDAVEELGVQWGGTRVAGNDDSGQILIGGGMESNIEASNEIARFNTEL 504 Query: 221 ------GSSSGPSKSFAADFGGKFV-------SEGGDFSVKGVLDRFSFETVLHALERAT 267 G ++ P A F + ++ + L A E Sbjct: 505 LNNRNSGDTTIPDGPTLATFPSALAVDLGVTRANTSGLAIGFSKGSTLLQMELSAFESDG 564 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A+P + Q+A SG + Y+ SSS GATSV+ + L TP + + Sbjct: 565 KGEIVAQPKIVTADRQTARIESGEEIPYQEASSS-GATSVSFKKAVLSLEVTPQITPDDK 623 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I + + +++ GV ++PS + +T V + +G TIVL G+ + P Sbjct: 624 IIMDL--VINQDSRGVVTANIPSIDTNEIETQVLVGNGETIVLGGIFTSEQSSTVTKTPF 681 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L IP LG LFR + E +E+ + TP L+ Sbjct: 682 LGDIPYLGRLFRKTENVNERSELLVFITPKLI 713 >gi|238760627|ref|ZP_04621755.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236] gi|238701160|gb|EEP93749.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236] Length = 657 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 57/284 (20%), Positives = 107/284 (37%), Gaps = 16/284 (5%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++V+ L+I QV ++ I EV+ +G Q A ++ Sbjct: 348 EQVITQLDIR-RAQVLVEAIIVEVQDSDALNLGVQWFNRNGGGSNFPDTGASASSITPND 406 Query: 242 GGDF--SVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G V G+ F ++ + AL + LA P++ + A F+ G + Sbjct: 407 VGSSLKGVAGLATGFYRGNWSGLFTALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPIL 466 Query: 297 TVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMP 349 T S +T +V + G+ L P + + L I+ EVS G Sbjct: 467 TGSQTTTGDNIFRTVDRKNVGIKLKVKPQINKGDSVLLEIEQEVSSVAEKAPGGTGDLGA 526 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ R V + S +V+ GLL + +PLL IP +G LFR++ + Sbjct: 527 TFNTRMVKNAVMVGSNNIVVVGGLLDSTSHDVTSKVPLLGDIPGIGFLFRSTSQKMVKRN 586 Query: 410 IFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFN-RVNK 450 + + P +++ + ++ D + E + R+N+ Sbjct: 587 LMLFIRPTILREQDSYIDASNQRLDKFQQEQNTDRTTNGQRINQ 630 >gi|327482460|gb|AEA85770.1| general secretion pathway protein D [Pseudomonas stutzeri DSM 4166] Length = 740 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 11/234 (4%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + V +AEV + + +G +S G + G S ++ + Sbjct: 468 VMIDVLLAEVNINDREGLGIDWRNITASLGGKELLIGTANGLGAS---GLNISALNSAGQ 524 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVT 308 + L+A + P L SGQ A G + T ++ + T +V Sbjct: 525 TKAALNAFYENRQAVIRSSPKLMVRSGQEARIEVGNEIPVVTGTTQSTETGNAPITQTVQ 584 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGT 367 GV+L PTV + G + L++ E+SE ++ P RK +TT+ L GG+ Sbjct: 585 YRKTGVLLSIKPTVQASGVVDLQVSQELSESTDTSTGENLTPVINNRKVETTLTLRDGGS 644 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 ++LAGL+ + + G+PLL +P +G LF++ + TE+ + P++++ Sbjct: 645 VMLAGLISSNKGRGDTGVPLLGDLPWVGNLFKSQSASENRTELIVMIIPYIIRD 698 >gi|285019414|ref|YP_003377125.1| general secretion pathway protein d [Xanthomonas albilineans GPE PC73] gi|283474632|emb|CBA17131.1| probable general secretion pathway protein d [Xanthomonas albilineans] Length = 772 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 81/323 (25%), Positives = 131/323 (40%), Gaps = 41/323 (12%) Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 + +V L V+ + AVE + T L +S + S + V+ L++ QV ++ Sbjct: 436 NGSVTLE--VQGDKVGVAAVEETNTLLVRSTPQAW--RSIRDVVEKLDVM-PMQVHIEAQ 490 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------------GD 244 +AEV Q G S + + AA+ G G G Sbjct: 491 VAEVSLTGDLQYGVNWFFENSVNASTDGSAANGTGIGRGAGLPSAAGRKIWGDIAGKIGS 550 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 V + V+ AL++ T ++ L P++ + A+ G + + S +TG Sbjct: 551 DGVGWTFLGRNAAAVITALDKVTNLKLLQTPSVFVRNNAEATLNVGTRIPINSTSINTGI 610 Query: 305 ------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350 +SV D GV+L P V G + L I EVS P N + + Sbjct: 611 GIDSSYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPSARPAACTAGTTNVVNTSA 670 Query: 351 ----YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 R+ T + SG TI+LAGL+ D G+P LSK+P++GALF + Sbjct: 671 CNVDINTRRVKTEAAVQSGDTIMLAGLINDSTVDSSLGVPFLSKMPVIGALFGQKGQQKN 730 Query: 407 ETEIFIAATPFLVK-PVAMRDLS 428 E+ + TP +V+ P R+L+ Sbjct: 731 RNEVIVLLTPTIVRDPQEARNLT 753 >gi|197121096|ref|YP_002133047.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. K] gi|196170945|gb|ACG71918.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. K] Length = 887 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 100/259 (38%), Gaps = 35/259 (13%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSFAADFGGKFVSEGG 243 QV ++ I E + +Q+G Q S + P+ A G+ ++G Sbjct: 618 PQVLIESRIVEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQSPNQGT 677 Query: 244 D----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + F+ L ALE ++T++ P + I Sbjct: 678 SSTPNYAVNLPAAIGQGSGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATID 737 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 + A+ G + S+S + T + + L TP V + G I L+I+ + P Sbjct: 738 NKEATIGQGISIPFSQTSAS--GVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNS 795 Query: 342 GVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + PS R+A+T V + G T V+ G+ +P LSKIP+LG FR+ Sbjct: 796 SLTGSNGQPSISKREAETEVLVKDGETTVIGGIYTRSTASKTASVPFLSKIPLLGFFFRS 855 Query: 401 SRFNREETEIFIAATPFLV 419 + TE+ I TP ++ Sbjct: 856 DTNTDDHTELLIFITPRIL 874 >gi|120612787|ref|YP_972465.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1] gi|120591251|gb|ABM34691.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1] Length = 829 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 23/258 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKFVS 240 QV ++ +I EV D Q G Q + + ++GPS + Sbjct: 535 PTQVLIEASIVEVTLDDTLQYGLQWAFNNAGPSNLNGAGQLLTNGPSDKTPIGSSIPTPT 594 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS- 299 G FS S VL+AL ++ ++ P+L + +A + G Q KT S Sbjct: 595 SSG-FSYALSNSLGSVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTGSL 653 Query: 300 ------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSY 351 ++ A ++ D GV L TP+V + + ++I V++ V + P + Sbjct: 654 ITSVSGGNSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGSISLQPVF 713 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 + R+ + V + SG IVL GL++D K G+PLL IP++G+LF N+ TE+ Sbjct: 714 QQRQITSKVAVRSGEAIVLGGLIRDTSNSSKSGVPLLQDIPLVGSLFSNNGKTGNRTELL 773 Query: 412 IAATPFLVK-PVAMRDLS 428 + TP +V+ + +R++S Sbjct: 774 VVITPKVVRTDIDIREVS 791 >gi|294670682|ref|ZP_06735557.1| hypothetical protein NEIELOOT_02404 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307570|gb|EFE48813.1| hypothetical protein NEIELOOT_02404 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 711 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 110/289 (38%), Gaps = 41/289 (14%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 N + +K++ L++ QV ++ I E +Q+G + GS+ S Sbjct: 420 TDNTFILQKFEKLIAELDVP-ARQVMVEARIVEAEDGFSRQLGVKFGYAGSNGKNSWGSN 478 Query: 232 ADFGGK--------------------------------------FVSEGGDFSVKGVLDR 253 G + ++ L Sbjct: 479 WANAGANRNSYVDKQRTLANWSRNPSQDIPALPAWTVDPNVNLPIAAATSSIALVHALSS 538 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + L A + ++ ++ P + + A +G + Y+ SSS ATS + Sbjct: 539 GALGLELSAQQAQNKLKIVSTPRVLTQDRKEAIIEAGTEVPYQEASSSG-ATSTSFKKAV 597 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + + TP + G+I + I+ A + P ++ +T V + GGT++L G+ Sbjct: 598 LGMTVTPNITPDGQIIMDIKINKDSVNSDCRATE-PCINTQRLNTNVMVEDGGTLILGGI 656 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +++ + +PLL IP++G LF++ + ++TE+ I TP +V + Sbjct: 657 YQEENSEGVSKVPLLGDIPVVGNLFKSKTRSDKKTELLIFITPRIVDNI 705 >gi|218458719|ref|ZP_03498810.1| pilus assembly secretion protein [Rhizobium etli Kim 5] Length = 258 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 99/241 (41%), Positives = 142/241 (58%), Gaps = 21/241 (8%) Query: 12 MSIFLFSSNPS-VAKLPPIKEANAAVIN---ISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I + P+ L + EA A N I+ +++ +GLNK +++ +P D Sbjct: 18 LAISVTGMAPASFGPLLTVDEARADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE L Sbjct: 78 DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------ 181 RRFI DS I VE+VSD +VL G VRT QD+ +A +L++ FL ++S Sbjct: 138 RRFIPDSAINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 197 Query: 182 -----------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + ++ SS Sbjct: 198 AVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQL 257 Query: 231 A 231 Sbjct: 258 G 258 >gi|83943483|ref|ZP_00955942.1| general secretion pathway protein D [Sulfitobacter sp. EE-36] gi|83845715|gb|EAP83593.1| general secretion pathway protein D [Sulfitobacter sp. EE-36] Length = 631 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 78/415 (18%), Positives = 161/415 (38%), Gaps = 33/415 (7%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA-DVVVH-SPR 85 + +A + + G + G N +++ P D+ + + A DV PR Sbjct: 183 AVTVGSAILEVLGQAGTGARLSVDAGSNLLLVRGTPEDIAE--IRSLAIAMDVAPRKDPR 240 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 V L D + + ++ D + + + + V Sbjct: 241 E------AVATTVFNLQYGDAQIIADIIKGTVGDATDITNAVAADVGAQSAEATSDGQFV 294 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 L+ +V + A + + + + Q ++++ L++ QV ++ I EV Sbjct: 295 PLNRVVAPDAVNITASVETNSIVVRGTAAQV--QEVGQLVHALDVRRP-QVMIEAAIVEV 351 Query: 206 RRDILKQIGFQHSI-----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-- 252 ++ +++G Q + + S+G S + V G S L Sbjct: 352 SGEVAERLGVQLGLGPNVPNGAIAASNFSNGGGVSLGSVLAAVGVPAGSALSTGLTLGAG 411 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TS 306 F ++ AL ++T+ R L+ P++T + + A+ G ++T S +T T+ Sbjct: 412 GNDFGILVQALSQSTSARLLSTPSVTTLDNEPATIVVGQNVPFRTGSFATDGNTATPFTT 471 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSG 365 + D G+ ++ P + + G + L I+ E+S V R +TTV + Sbjct: 472 IERRDVGITMNVVPRITAGGVVQLVIEQEISSLTNANVEGAADLVTNRRVINTTVMADNR 531 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GT+VL GL+ DD +P L +P++G LF++ + +F+ P +++ Sbjct: 532 GTVVLGGLITDDRINGSSKVPGLGDLPVVGELFKSRNARNTQRTLFVFLRPTILR 586 >gi|71276554|ref|ZP_00652828.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Dixon] gi|71901093|ref|ZP_00683201.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] gi|170730937|ref|YP_001776370.1| fimbrial assembly protein [Xylella fastidiosa M12] gi|71162625|gb|EAO12353.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Dixon] gi|71729136|gb|EAO31259.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] gi|167965730|gb|ACA12740.1| fimbrial assembly protein [Xylella fastidiosa M12] Length = 630 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 104/259 (40%), Gaps = 29/259 (11%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI-------------------TGSSSGPSKSFA 231 DQV ++ I + +G + + SS+ ++ Sbjct: 363 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTTADSSTSATRGLN 422 Query: 232 ADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 D GG + + + +F+ + L AL++ + ++ P + + + Sbjct: 423 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 482 Query: 289 SGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341 G + Y T++ +V + + L TPT+ + R+ L + E+ + + Sbjct: 483 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 542 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+ Sbjct: 543 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 602 Query: 402 RFNREETEIFIAATPFLVK 420 ++++ E+ I TP +++ Sbjct: 603 GKDKQKAELLIFVTPKVLR 621 >gi|254373092|ref|ZP_04988581.1| hypothetical protein FTCG_00669 [Francisella tularensis subsp. novicida GA99-3549] gi|151570819|gb|EDN36473.1| hypothetical protein FTCG_00669 [Francisella novicida GA99-3549] Length = 593 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 21/258 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKF 238 K+V+N ++I DQV ++ I EV R ++GF + + +G + +F ++ Sbjct: 333 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 391 Query: 239 VSEGGDFSVKG-----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 V V + + ALE + +A P L + Q A Sbjct: 392 GPTPTPTPVDTFVGTTAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVAFI 451 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGV 343 G Y ++S A +V + + L TP + G I + I + P Sbjct: 452 KDGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTP 510 Query: 344 NAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 GD+P + R+ T V G T+V+ G+ + ++ + IP L IP LG LF ++ Sbjct: 511 QGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTK 570 Query: 403 FNREETEIFIAATPFLVK 420 +++E+ I TP +++ Sbjct: 571 ITDQDSELLIFITPKIIE 588 >gi|312794853|ref|YP_004027775.1| general secretion pathway protein D [Burkholderia rhizoxinica HKI 454] gi|312166628|emb|CBW73631.1| General secretion pathway protein D [Burkholderia rhizoxinica HKI 454] Length = 847 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 111/314 (35%), Gaps = 46/314 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------------GSSSGP 226 + V++ L+ QV ++ I ++ +G Q +++G Sbjct: 400 RNVIDQLDQR-RAQVYIEAVIVDMNATSGANLGIQWQGALLSNNGNNGVYGGSNFNANGS 458 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDR------------------FSFETVLHALERATA 268 G V++ + + F +L AL ++ Sbjct: 459 QSIVGLSATGAIVAQDPATAAAQIGPNNLLNNGLNIGLLHRFGKVFGLGGLLQALATSSD 518 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----------HDYGVVLHF 318 L+ P L + + A G T S +T + TT D G+ LH Sbjct: 519 TNILSTPNLITLDNEEARIVVGQNVPVVTGSYATPTANTTTSVSAFNTFDRQDVGITLHI 578 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + G + L+I E S G + S R +TV G IVL GL++D+ Sbjct: 579 KPQISEGGVLKLQIYQEDSAVQQGTQSNPGGVSITKRSIQSTVLADDGEIIVLGGLIQDN 638 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSV 436 +P L IP+LG+LFR+ R ++ + + P +V+ + L+ Y Sbjct: 639 YANGNSKVPWLGNIPVLGSLFRSESKTRTKSNLMVFLRPVIVRDQSTSSQLALDRYEYLR 698 Query: 437 EDDAKAFFFNRVNK 450 + A NR+ K Sbjct: 699 AEQAAYQSDNRIVK 712 >gi|189424346|ref|YP_001951523.1| general secretion pathway protein D [Geobacter lovleyi SZ] gi|189420605|gb|ACD95003.1| general secretion pathway protein D [Geobacter lovleyi SZ] Length = 648 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 79/374 (21%), Positives = 129/374 (34%), Gaps = 34/374 (9%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 D + L + + + G V + Q S ++ + Sbjct: 280 NTDATEMAKVLDGVVKGITAQTTTLQ-----AGTV-SAQSSPFDSGKVTITADKASNSLV 333 Query: 177 ANSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSI-----------T 220 +S NLL + QV ++V IAE+ + +G Q Sbjct: 334 VMASPTDYNNLLQVIKKLDRRSKQVFVQVLIAEISPSKSRDLGVQSGAFAVGALGKYLQG 393 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPT 276 G P +F + G + + L S +L ALE + L+ P Sbjct: 394 GGIYDPFNTFGSLLGSGSSTSPLSTLIADKLKNTSKPVTGAAILQALESEGMLNILSTPN 453 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + + A G +K+ S+ + SV D G+ L P V I + + Sbjct: 454 ILTTDNKEAEINVGENVPFKSSSTQSTFGTTESVERKDIGINLKIKPQVSEGDYIRMDLY 513 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 E+S R A T+V + TIV+ GL++D + +PLL IP Sbjct: 514 QEISAVKSDKGDAVDLVTTKRSAKTSVVVKDNETIVIGGLIQDTEDNTIQKVPLLGDIPG 573 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS---VEDDAKAFFFNRVNK 450 LG F+ + R++T + I TP +VK RDL+ + E + N N+ Sbjct: 574 LGWFFKTTTKTRKKTNLLIMLTPQVVK--DARDLASITESQKGKFTEAAKEFGPLNVQNE 631 Query: 451 IYGPKEASEVEGQN 464 I G +GQ Sbjct: 632 ISGKATKPVSQGQE 645 >gi|330501497|ref|YP_004378366.1| type 4 fimbrial biogenesis outer membrane protein PilQ [Pseudomonas mendocina NK-01] gi|328915783|gb|AEB56614.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor [Pseudomonas mendocina NK-01] Length = 704 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 107/273 (39%), Gaps = 32/273 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------- 234 ++++ L+I QV ++ I E D K +G + ++ + Sbjct: 430 RRIVTQLDIP-VRQVMIEARIVEANVDYDKALGVRWGGNFWVGDKWNAWGKNGNLGVEEN 488 Query: 235 --GGKF-------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 GG+ V+ + V + + L A+E++ + ++ Sbjct: 489 EDGGQVGRFPGDRQTPVNTPFVDLGVAGTSGIGIGFVTNNTILDMQLSAMEKSGSGEVVS 548 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 +P + ++A G + Y+ SSS ++ + + + L TP + R+ + ++ Sbjct: 549 QPKVVTSDKETAKILKGTEVPYQESSSSGATST-SFKEAALSLEVTPQITPDNRVLMEVK 607 Query: 334 TEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 P + + G +P+ + + V + G TIV+ G+ + + + +P L + Sbjct: 608 VTKDAPDFSVTSSTGGIPAINKNEVNAKVLVADGETIVIGGVYSNTQSKSVDKVPFLGDL 667 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 P +G +FR + E+ + TP ++ A+ Sbjct: 668 PFVGRVFRRDLVQDRKAELLVFLTPRIMNNQAI 700 >gi|313110575|ref|ZP_07796459.1| secretion protein XqhA [Pseudomonas aeruginosa 39016] gi|310882961|gb|EFQ41555.1| secretion protein XqhA [Pseudomonas aeruginosa 39016] Length = 776 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 112/263 (42%), Gaps = 23/263 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231 + ++ L++ Q+ ++ I E+ +I +G Q ++ FA Sbjct: 340 EDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLL 398 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A GK +E D ++ G+ R F ++ AL R + L+ P+L + Q A G Sbjct: 399 GALQAGKPPAELPDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVG 457 Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 ++T S +T A T+V D GV L TP + + L I+ E+S Sbjct: 458 QNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTA 517 Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 R +TV G IVL GL++DD+ + +PLL IP +G LFR+ Sbjct: 518 TLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRS 577 Query: 401 SRFNREETEIFIAATPFLVKPVA 423 SR R + + + P +V+ A Sbjct: 578 SRETRVKRNLMVFLRPSIVRDAA 600 >gi|134096276|ref|YP_001101351.1| fimbrial assembly protein PilQ [Herminiimonas arsenicoxydans] gi|133740179|emb|CAL63230.1| Putative type IV pilus biogenesis secretin PilQ [Herminiimonas arsenicoxydans] Length = 697 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 61/322 (18%), Positives = 118/322 (36%), Gaps = 16/322 (4%) Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + G D + IL +R A ++ + +VL V + Q A Sbjct: 386 VFGIDNSGGGSRSILSKRGSAVVDPRTNQLFITDIPSKLEEIRALVLKTDVASRQVMIEA 445 Query: 161 VEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + ++ S S + + N+L + G+ G + Sbjct: 446 RIVEADDKFSSSLGVKLGFGLQRGRNNILEVGGQQ------------NADASAPGLNLTN 493 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + +G + + A ++ L ALE + ++ P + Sbjct: 494 LQTVNGNAVNLPASPLNGNTPGSVALTLFNAAATRFIGLELSALEADGKGKIISSPRVIT 553 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 A G + Y+ +SS GATSV+ + L TP + G + L + +V++ Sbjct: 554 ADQLKALIEQGTELPYQQATSS-GATSVSFRKANLRLEVTPQITPDGNVILDV--DVNKD 610 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +GV + + T V + +GGT+V+ G+ + + +P IP+LG LF+ Sbjct: 611 SVGVETRSGFAIDTKHVKTQVLIDNGGTVVIGGIFQQTERDSVSKVPFFGDIPVLGNLFK 670 Query: 400 NSRFNREETEIFIAATPFLVKP 421 + ++TE+ I TP ++ Sbjct: 671 TTGRTNDKTELLIFLTPKILND 692 >gi|91787225|ref|YP_548177.1| type II and III secretion system protein [Polaromonas sp. JS666] gi|91696450|gb|ABE43279.1| type II and III secretion system protein [Polaromonas sp. JS666] Length = 747 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 83/391 (21%), Positives = 140/391 (35%), Gaps = 52/391 (13%) Query: 101 LIGHDGKQMLNLDILI----ERDIAHLEMTLRRFIADSNIRVEMVSDTVV---LHGMVRT 153 IG G + +I + D L TLR +A + + V L G Sbjct: 298 AIGGSGADPASGNIYVVYLKNADATKLATTLRAAMAANTLGAIAAGPVVTGAPLPGPGSV 357 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSS--------------KKVMNLLNIAGEDQVTLK 199 L+ + S G+ Q S++ + V++ L+ A QV ++ Sbjct: 358 AAAGAATATLTSSQPSTGGQIQADPSTNSLIITAPEPLYRQLRAVIDKLD-ARRAQVFVE 416 Query: 200 VTIAEVRRDILKQIGFQHSIT----GSSSGPSKSFAADFGGKFV--------------SE 241 IAEV D + G Q G ++ + GG + S Sbjct: 417 SLIAEVNADKAAEFGIQFQGALGKKGDNNIGLLGTNFNIGGTNIITLATQAAAGVIAPST 476 Query: 242 GGDFSVKGVLDRFSFETVL-HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G + V + + L LE A L+ P L + + A G + T Sbjct: 477 GANLGVAHLTNGVYVLGFLARFLEANGAGNILSTPNLLTLDNEEARIVIGQNVPFITGQY 536 Query: 301 STGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPS 350 + T ++ D G+ L P + G + ++I EVS +N+ Sbjct: 537 TNANTSAGSVNPFQTIERKDVGLTLRVKPQISENGTVKMQIFQEVSSVQPSSINSATGLI 596 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R ++ V + G +VL GLL+D+ E +P L IPILG LF+ +R++T + Sbjct: 597 TNKRSIESNVLVDDGAIVVLGGLLQDEYSGNVEKVPGLGDIPILGHLFKGETRSRKKTNL 656 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 + P +V+ + S D Y + + Sbjct: 657 MVFLRPVVVRDAPSSE-SLSMDRYDLMRAVQ 686 >gi|116049822|ref|YP_791371.1| secretion protein XqhA [Pseudomonas aeruginosa UCBPP-PA14] gi|115585043|gb|ABJ11058.1| secretion protein XqhA [Pseudomonas aeruginosa UCBPP-PA14] Length = 776 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 112/263 (42%), Gaps = 23/263 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231 + ++ L++ Q+ ++ I E+ +I +G Q ++ FA Sbjct: 340 EDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLL 398 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A GK +E D ++ G+ R F ++ AL R + L+ P+L + Q A G Sbjct: 399 GALQAGKPPAELPDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVG 457 Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 ++T S +T A T+V D GV L TP + + L I+ E+S Sbjct: 458 QNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTA 517 Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 R +TV G IVL GL++DD+ + +PLL IP +G LFR+ Sbjct: 518 TLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRS 577 Query: 401 SRFNREETEIFIAATPFLVKPVA 423 SR R + + + P +V+ A Sbjct: 578 SRETRVKRNLMVFLRPSIVRDAA 600 >gi|114331780|ref|YP_748002.1| type IV pilus secretin PilQ [Nitrosomonas eutropha C91] gi|114308794|gb|ABI60037.1| type IV pilus secretin PilQ [Nitrosomonas eutropha C91] Length = 720 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 105/261 (40%), Gaps = 39/261 (14%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFG-------GKFVS 240 QV ++ I E + +G + + ++G + + G G Sbjct: 451 RQVMIETRIVEATDTFSRNLGARFGVQNATRIGSQTNGRRLGISGNLGNSSELAAGTISP 510 Query: 241 EGGD----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 GGD S+ + + L ALE + R +A P L Sbjct: 511 SGGDNLNVNLPAAALAGVAGGPAALGLSLIKINNGTLINLELSALESDSQGRIIASPRLV 570 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + AS G + ++T+S + + + L TP + I +++Q V++ Sbjct: 571 TANRVEASIEQGTEIPFQTISVTRP--QIQFKKAVLGLKVTPQITPDDNIIMKLQ--VNQ 626 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G + P+ ++ T V + +GGT+V+ G+ + ++ + IPLL +P+LG LF Sbjct: 627 DTRGESTPAGPAIDTKQIVTEVLVENGGTVVIGGIFEQVEKRDRNQIPLLGDVPLLGNLF 686 Query: 399 RNSRFNREETEIFIAATPFLV 419 +N+ ++ E+ I TP ++ Sbjct: 687 KNTAKRDDKRELLIFVTPRIL 707 >gi|296389736|ref|ZP_06879211.1| secretion protein XqhA [Pseudomonas aeruginosa PAb1] Length = 776 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 112/263 (42%), Gaps = 23/263 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231 + ++ L++ Q+ ++ I E+ +I +G Q ++ FA Sbjct: 340 EDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLL 398 Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A GK +E D ++ G+ R F ++ AL R + L+ P+L + Q A G Sbjct: 399 GALQAGKPPAELPDGAIVGLGSR-DFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVG 457 Query: 291 GQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 ++T S +T A T+V D GV L TP + + L I+ E+S Sbjct: 458 QNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTA 517 Query: 344 NAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 R +TV G IVL GL++DD+ + +PLL IP +G LFR+ Sbjct: 518 TLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFRS 577 Query: 401 SRFNREETEIFIAATPFLVKPVA 423 SR R + + + P +V+ A Sbjct: 578 SRETRVKRNLMVFLRPSIVRDAA 600 >gi|153825669|ref|ZP_01978336.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-2] gi|229520028|ref|ZP_04409457.1| MSHA biogenesis protein MshL [Vibrio cholerae TM 11079-80] gi|297580540|ref|ZP_06942466.1| MSHA biogenesis protein MshL [Vibrio cholerae RC385] gi|149740699|gb|EDM54806.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-2] gi|229342977|gb|EEO07966.1| MSHA biogenesis protein MshL [Vibrio cholerae TM 11079-80] gi|297534956|gb|EFH73791.1| MSHA biogenesis protein MshL [Vibrio cholerae RC385] Length = 559 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 105/275 (38%), Gaps = 37/275 (13%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++V L I+ + QV L+ I EV Q G S SS+G S + + + Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQD 320 Query: 239 VSEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S SV V+ SF+ V+ + + L+ P +TA + Q Sbjct: 321 SSGNPITSVLPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQ 380 Query: 284 SASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 A G Y T SS T ++T G+ L TP + G + L + Sbjct: 381 KAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVH 440 Query: 334 TEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 V E + +R++D+ + G +V+ GL+K + Sbjct: 441 PAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSK 500 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 501 VPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535 >gi|327483259|gb|AEA77666.1| MSHA biogenesis protein MshL [Vibrio cholerae LMA3894-4] Length = 559 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 68/277 (24%), Positives = 108/277 (38%), Gaps = 41/277 (14%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233 ++V L I+ + QV L+ I EV Q G S SS+G S S D Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQD 320 Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G ++ GG +V V+ SF+ V+ + + L+ P +TA + Sbjct: 321 SNGNPITSVLPGLDAIGNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 378 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331 Q A G Y T SS T ++T G+ L TP + G + L Sbjct: 379 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 438 Query: 332 IQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + V E + +R++D+ + G +V+ GL+K + Sbjct: 439 VHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 498 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 499 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535 >gi|109899541|ref|YP_662796.1| type II and III secretion system protein [Pseudoalteromonas atlantica T6c] gi|109701822|gb|ABG41742.1| type II and III secretion system protein [Pseudoalteromonas atlantica T6c] Length = 711 Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 123/274 (44%), Gaps = 20/274 (7%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 V+ L+ V ++V +AEV+ + + G + + SS G ++ GG + G Sbjct: 441 VIKKLDKPAAS-VMVEVILAEVQLNDSEDTGVEW-LANSSLGRFGITSSTIGGLGLGASG 498 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F++ + +L+ + + P L SG AS G + T +S + Sbjct: 499 -FNMT-LDSAGQTRAMLNLFYKNEKANIRSRPRLMVKSGGEASIDVGNEIPVITSNSQST 556 Query: 304 A-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRK 355 +++ GV+L PTV + G + + I E+SE ++ D P+ RK Sbjct: 557 TDSDAVVLQTISYRKTGVLLEVKPTVHASGFVDIEITQELSEATETSSSDIDSPTILNRK 616 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 TTV L GG+++L GL+ +G+P+L ++P++G LF ++ TE+ I Sbjct: 617 ISTTVTLRDGGSVLLGGLISSTTSTGTQGVPILGRLPMIGKLFSTDSNAQDRTELMIMII 676 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 P++ L+ PD+ + D+ + ++++ Sbjct: 677 PYI--------LNSPDEAEQLTDELQKARIDKLS 702 >gi|170695725|ref|ZP_02886867.1| type IV pilus secretin PilQ [Burkholderia graminis C4D1M] gi|170139330|gb|EDT07516.1| type IV pilus secretin PilQ [Burkholderia graminis C4D1M] Length = 581 Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 15/242 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFGGK----F 238 QV ++ I E + +G + S+ G+S SG AD + F Sbjct: 341 RPTRQVLIEARIVEGEHGFSRNLGVRLSMAGTSADGTTRGLSGGKDGLVADLSARPIAGF 400 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ L ALE ++ P + A G + Y+ Sbjct: 401 DAATAGLTLFAAGATRLLNIELSALEAEGRGEVVSSPRVVTADRMKAVVEQGTELPYQ-A 459 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P ++ GR+ L + +AG P+ + T Sbjct: 460 KVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGEQTDAG--PAINTKHVQT 517 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ GGT+ + G+ D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 518 RVEVEDGGTVSIGGIYATDGRDDVTRVPLLGKIPVLGALFRHRAHRDQRSELAVFITPRV 577 Query: 419 VK 420 V+ Sbjct: 578 VQ 579 >gi|15640429|ref|NP_230056.1| MSHA biogenesis protein MshL [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587598|ref|ZP_01677363.1| MSHA biogenesis protein MshL [Vibrio cholerae 2740-80] gi|121727263|ref|ZP_01680422.1| MSHA biogenesis protein MshL [Vibrio cholerae V52] gi|147674773|ref|YP_001218670.1| MSHA biogenesis protein MshL [Vibrio cholerae O395] gi|153802215|ref|ZP_01956801.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-3] gi|153818263|ref|ZP_01970930.1| MSHA biogenesis protein MshL [Vibrio cholerae NCTC 8457] gi|153822274|ref|ZP_01974941.1| MSHA biogenesis protein MshL [Vibrio cholerae B33] gi|227080613|ref|YP_002809164.1| MSHA biogenesis protein MshL [Vibrio cholerae M66-2] gi|229507042|ref|ZP_04396548.1| MSHA biogenesis protein MshL [Vibrio cholerae BX 330286] gi|229508803|ref|ZP_04398295.1| MSHA biogenesis protein MshL [Vibrio cholerae B33] gi|229519791|ref|ZP_04409234.1| MSHA biogenesis protein MshL [Vibrio cholerae RC9] gi|229606316|ref|YP_002876964.1| MSHA biogenesis protein MshL [Vibrio cholerae MJ-1236] gi|254226017|ref|ZP_04919617.1| MSHA biogenesis protein MshL [Vibrio cholerae V51] gi|254850634|ref|ZP_05239984.1| MSHA biogenesis protein MshL [Vibrio cholerae MO10] gi|255743787|ref|ZP_05417744.1| MSHA biogenesis protein MshL [Vibrio cholera CIRS 101] gi|262153600|ref|ZP_06028728.1| MSHA biogenesis protein MshL [Vibrio cholerae INDRE 91/1] gi|262167634|ref|ZP_06035338.1| MSHA biogenesis protein MshL [Vibrio cholerae RC27] gi|298501065|ref|ZP_07010866.1| MSHA biogenesis protein MshL [Vibrio cholerae MAK 757] gi|9654823|gb|AAF93575.1| MSHA biogenesis protein MshL [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548171|gb|EAX58243.1| MSHA biogenesis protein MshL [Vibrio cholerae 2740-80] gi|121630382|gb|EAX62777.1| MSHA biogenesis protein MshL [Vibrio cholerae V52] gi|124122239|gb|EAY40982.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-3] gi|125621473|gb|EAZ49807.1| MSHA biogenesis protein MshL [Vibrio cholerae V51] gi|126511222|gb|EAZ73816.1| MSHA biogenesis protein MshL [Vibrio cholerae NCTC 8457] gi|126520230|gb|EAZ77453.1| MSHA biogenesis protein MshL [Vibrio cholerae B33] gi|146316656|gb|ABQ21195.1| MSHA biogenesis protein MshL [Vibrio cholerae O395] gi|227008501|gb|ACP04713.1| MSHA biogenesis protein MshL [Vibrio cholerae M66-2] gi|227012257|gb|ACP08467.1| MSHA biogenesis protein MshL [Vibrio cholerae O395] gi|229344480|gb|EEO09455.1| MSHA biogenesis protein MshL [Vibrio cholerae RC9] gi|229354206|gb|EEO19137.1| MSHA biogenesis protein MshL [Vibrio cholerae B33] gi|229355787|gb|EEO20707.1| MSHA biogenesis protein MshL [Vibrio cholerae BX 330286] gi|229368971|gb|ACQ59394.1| MSHA biogenesis protein MshL [Vibrio cholerae MJ-1236] gi|254846339|gb|EET24753.1| MSHA biogenesis protein MshL [Vibrio cholerae MO10] gi|255738536|gb|EET93924.1| MSHA biogenesis protein MshL [Vibrio cholera CIRS 101] gi|262023970|gb|EEY42667.1| MSHA biogenesis protein MshL [Vibrio cholerae RC27] gi|262030627|gb|EEY49263.1| MSHA biogenesis protein MshL [Vibrio cholerae INDRE 91/1] gi|297540313|gb|EFH76373.1| MSHA biogenesis protein MshL [Vibrio cholerae MAK 757] Length = 559 Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 68/277 (24%), Positives = 108/277 (38%), Gaps = 41/277 (14%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233 ++V L I+ + QV L+ I EV Q G S SS+G S S D Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQD 320 Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G ++ GG +V V+ SF+ V+ + + L+ P +TA + Sbjct: 321 SNGNPITSVLPGLDAIGNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 378 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331 Q A G Y T SS T ++T G+ L TP + G + L Sbjct: 379 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 438 Query: 332 IQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + V E + +R++D+ + G +V+ GL+K + Sbjct: 439 VHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 498 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 499 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535 >gi|82703023|ref|YP_412589.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411088|gb|ABB75197.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 789 Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 36/280 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAAD 233 + V+ L++ QV ++ IAE+ D + G Q T G + + Sbjct: 440 RAVVEKLDVR-RVQVYIEALIAEITADRAAEFGIQWQNLSNAAQGGTQVFGGTNFNAGTA 498 Query: 234 FGGKFVS------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 GG +S G ++ G+ + T++ ALE L+ P Sbjct: 499 GGGSIISTAQNPIANAASGLTIGIMNGLVTAIPGIGPVLNIHTLIRALETDANANILSTP 558 Query: 276 TLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327 TL ++ + A G T ++ +V+ D G+ L P + Sbjct: 559 TLLTLNNEEARIIIGQNVPIPTGQFIPPVGGAVTSPFQTVSRQDVGLSLKIKPLISEGNT 618 Query: 328 IGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + ++I EVS V G VNA + R ++TV + G +VL GL++D + E IP Sbjct: 619 VRVQIFQEVSSVVPGTVNATNGLITNKRSIESTVLVDDGQILVLGGLMQDSVNDSVERIP 678 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L+ IP+ G LF ++ +R +T + + P L++ D Sbjct: 679 LVGAIPLFGQLFSYNKRSRNKTNLMVFLRPTLMRAGDAAD 718 >gi|126666716|ref|ZP_01737693.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter sp. ELB17] gi|126628761|gb|EAZ99381.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter sp. ELB17] Length = 705 Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 69/364 (18%), Positives = 147/364 (40%), Gaps = 49/364 (13%) Query: 105 DGKQMLNLDILIERDIAHLEMTL-----RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 D +Q+ N+ ++ D L ++ + +R++++ V + + + Sbjct: 348 DKRQIGNVLLVAPADEIAARERLELETTKQIAELAPLRLDIIQVNYAKAAEVVALVQADQ 407 Query: 160 AVELSETFLSQSGRNQYAN--------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + S F+S R + + +++++ ++A QV+++ I + ++ + Sbjct: 408 ELISSRGFISSDSRTNTISVRETVEKLNEIRRLVSTWDVA-VRQVSIEARIVRAQTNVAE 466 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---------------------------- 243 +G + G+S G + + + GG + GG Sbjct: 467 SLGVRWG--GASYGNNGNNSTVVGGSLETVGGVMGAGAANSTSVTFPGALAVDLGVSGDG 524 Query: 244 --DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 F+V F + L ALE +++P + Q+AS SG + ++ SSS Sbjct: 525 ASSFAVGFSGGDFLVDLELSALESDGKAEIVSQPRVVTADRQTASIKSGQEIPFQEASSS 584 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 ++ + + + L TP + +I + + EV++ G + + P+ T V Sbjct: 585 GATST-SFKEAVLSLEVTPQITPDDKIIMDL--EVTQDSRGEDTPNGPAINTNSVTTQVL 641 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +G TIVL G+ + + P L IP LG LF+ ++ +E+ I TP ++K Sbjct: 642 VANGETIVLGGIFESTNTETTTKTPFLGDIPYLGRLFKRTQTTELRSELLIFITPKIIKN 701 Query: 422 VAMR 425 +R Sbjct: 702 DLVR 705 >gi|71908829|ref|YP_286416.1| type II and III secretion system secretin [Dechloromonas aromatica RCB] gi|71848450|gb|AAZ47946.1| type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal [Dechloromonas aromatica RCB] Length = 667 Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 122/316 (38%), Gaps = 21/316 (6%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V+T+ S+ + L A +++++ L++A + V L+V + EV R L Sbjct: 289 VKTVAKSKDVFADEKLNLLIVKDTPDAMRLVERLIDSLDLAEPE-VMLEVEVLEVTRSRL 347 Query: 211 KQIGFQHSITGSSS------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRF--SF 256 Q G + + GG + + +G L F + Sbjct: 348 NQFGVDWPDSVGYGLLQDTLSTTTATAAGYTTTVTPGGTLANGYINLRNRGGLTSFVANP 407 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYG 313 L+ + LA P + + + A G + T +++ + SV D G Sbjct: 408 GLTLNLKGQNADTNVLANPRIRVKNREKAKVHIGDKLPVFTTTATANVGVSASVNYLDVG 467 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELPSGGTIVL 370 + L P V + +++ EVS V + R A TT+ L G T VL Sbjct: 468 LKLDVEPNVTLDDEVSIKVGLEVSSIVKEITGPSNSLAYQIGTRSASTTLRLKDGETQVL 527 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 AGL+ D+ ++ IP L +IP++G F + + +TEI + TP +V+ + + +P Sbjct: 528 AGLISDEERKTTSHIPGLGEIPVVGRAFGSHKDTSTKTEIILLITPRIVRNIHRPEYVQP 587 Query: 431 DDHYSVEDDAKAFFFN 446 E+ A Sbjct: 588 VISSGTENAVGAAPMG 603 >gi|254291307|ref|ZP_04962101.1| MSHA biogenesis protein MshL [Vibrio cholerae AM-19226] gi|150422763|gb|EDN14716.1| MSHA biogenesis protein MshL [Vibrio cholerae AM-19226] Length = 559 Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 105/275 (38%), Gaps = 37/275 (13%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++V L I+ + QV L+ I EV Q G S SS+G S + + + Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGAITQD 320 Query: 239 VSEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S SV V+ SF+ V+ + + L+ P +TA + Q Sbjct: 321 SSGNPITSVLPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQ 380 Query: 284 SASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 A G Y T SS T ++T G+ L TP + G + L + Sbjct: 381 KAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVH 440 Query: 334 TEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 V E + +R++D+ + G +V+ GL+K + Sbjct: 441 PAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSK 500 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 501 VPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535 >gi|284047888|ref|YP_003398227.1| type II and III secretion system protein [Acidaminococcus fermentans DSM 20731] gi|283952109|gb|ADB46912.1| type II and III secretion system protein [Acidaminococcus fermentans DSM 20731] Length = 405 Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 72/244 (29%), Positives = 109/244 (44%), Gaps = 13/244 (5%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 Q+TL+ I + +++G Q + G K FGG+ G Sbjct: 160 RPTRQITLEARILSLGESASRELGLQWDWSALPEGRKKG-EGGFGGRLH--------LGH 210 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVT 308 SF+ L AL + + LA P + + G+ AS G T V++ST ++ Sbjct: 211 SYGASFQARLSALCQEGKAKVLATPRIITLPGREASIFIGDHIPVVTEKVTNSTTTSTTE 270 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 D G+ L +TP + G I ++ TEVS P + + R ADT V L T+ Sbjct: 271 YVDAGIRLSYTPYLSQDGLITAKVHTEVSTPTLIAELKNY-RITSRTADTHVRLREKETL 329 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDL 427 V+ GL+ + Q E IPLLSK+P+LG LF+ +R TE+ + TP+L P + Sbjct: 330 VIGGLISEQEQHRMEAIPLLSKLPLLGELFKFRSRSRNRTEVCMFLTPYLSGPGQPLPAA 389 Query: 428 SRPD 431 PD Sbjct: 390 VLPD 393 >gi|262273882|ref|ZP_06051695.1| MSHA biogenesis protein MshL [Grimontia hollisae CIP 101886] gi|262222297|gb|EEY73609.1| MSHA biogenesis protein MshL [Grimontia hollisae CIP 101886] Length = 533 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 116/298 (38%), Gaps = 26/298 (8%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + GM+ T D + V + L K+ ++ + QV L+ + EV Sbjct: 214 VSGMIGT-GDGRSIVISPQAGLITVKAYPNELREVKRFLDASQKRLKRQVILEAKVLEVT 272 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 Q G S G+S G + G +S + +F +V++ Sbjct: 273 LSDGYQQGVNWSNIGASIGSGGINISRPETKLAGDMISNVIGGQTNITITDGNFSSVMNF 332 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----------SSSTGATSVTTHDY 312 L+ + L+ P +TA + Q A GG + T S S +T Sbjct: 333 LDTQGDVNVLSSPRVTAANNQKAVIKVGGDEYFVTDISSSDTSGDNSDSGPNIELTPFFS 392 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRKADTTVE 361 G++L TP + + L + V + V + + +R++D+ + Sbjct: 393 GILLDVTPQIDDDNGVLLHVHPAVVDVVTEEKTIQLGTSSEPYVLPLAKTAIRESDSVIH 452 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG +V+ GL+K +++ +PLL IP LG LFRN +++TE+ I P +V Sbjct: 453 ARSGDVVVIGGLMKSSYEEVVSKVPLLGDIPGLGHLFRNVNRMKQKTELVILLQPSVV 510 >gi|226953742|ref|ZP_03824206.1| fimbrial assembly protein PilQ [Acinetobacter sp. ATCC 27244] gi|226835474|gb|EEH67857.1| fimbrial assembly protein PilQ [Acinetobacter sp. ATCC 27244] Length = 590 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 97/281 (34%), Gaps = 38/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228 +K+++LL+++ QV ++ I D K++G + I + Sbjct: 311 RKMVDLLDVS-VKQVMIEARIVRASTDFTKEMGVKWGILSQGITRNNDLLVGGSDTTLWN 369 Query: 229 ---------------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + D G L F + L A++ Sbjct: 370 LREPKKDSETGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAVQADG 429 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 ++ P + Q A SG + Y T + D + L TP++ Sbjct: 430 FGEVISTPKVMTADKQPAKIESGTKIPYASSTGGGANAVPKTEFIDATLSLDVTPSITPD 489 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G++ +++ P G + + DT V + +G T+VL G+ + + + + Sbjct: 490 GKVMMKLNIAKDAPGAPTPTGQL-TISKNSIDTNVLVDNGETVVLGGIFEQENLSSQIKV 548 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P L +P +G LFR + E+ I TP +V R+ Sbjct: 549 PFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTRN 589 >gi|254283571|ref|ZP_04958539.1| general secretion pathway protein D [gamma proteobacterium NOR51-B] gi|219679774|gb|EED36123.1| general secretion pathway protein D [gamma proteobacterium NOR51-B] Length = 682 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 109/281 (38%), Gaps = 40/281 (14%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------ 232 ++ + V+ L+I QV ++ I E+ +++G Q S + + Sbjct: 342 AALEAVIARLDIR-RAQVLVEAIIVEMEVVEGQELGLQWLFANDSGFYGSNISTSSAQRA 400 Query: 233 -----------------------DFGGKFVS-EGGDFSVKGVLDRFSFETVLHALERATA 268 D G G V D + +L+ALE Sbjct: 401 RNAAIADAILPGDGDSSGDIGITDLAGALSQVPGATLGWGAVDDDLTMTVILNALETQGN 460 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFT 319 L+ P+L + + A T G Q + T S + + ++ + G+ L T Sbjct: 461 ANILSTPSLLTLDNEEAYITVGQQVPFVTGSFTNTGSGDSARNPFQTIERQNVGITLKVT 520 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P V + L I EVS + RK +T V G +VL GL+KD++Q Sbjct: 521 PQVNEGDSVVLDIVQEVSSISQQLLVASDVITNERKIETKVLASDGDIVVLGGLVKDEVQ 580 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++G+P+LS IP+LG LFRN ++ + + P +V+ Sbjct: 581 DSQQGVPILSSIPLLGRLFRNDVVEVSKSNLLVFIRPTIVR 621 >gi|149190625|ref|ZP_01868893.1| type II secretory pathway, component EpsD [Vibrio shilonii AK1] gi|148835508|gb|EDL52477.1| type II secretory pathway, component EpsD [Vibrio shilonii AK1] Length = 674 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 107/287 (37%), Gaps = 45/287 (15%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKS------ 229 +++ L+I QV ++ I E+ +G Q + S++G S Sbjct: 334 EIIKQLDIR-RAQVLIEALIVELADVDGANLGVQWGNASAGSVVQFSNTGASIGNVMVGM 392 Query: 230 -------------------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 + D+ + G + + ++ A+ Sbjct: 393 EEAKDKTTTETRYRADGTPYNVETKTSGDYTKLASALSGVQGAAVGIALGDWTALITAVS 452 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFT 319 + L+ P++T + ASF G + T S++ +V + G+ L Sbjct: 453 STSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSNNSNPFQTVDRKEVGIKLKVV 512 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + + L I+ EVS V+G N + R+ +T+V + G +VL GL+ + Sbjct: 513 PQINEGNSVQLNIEQEVSN-VLGANGAVDVRFAKRQLNTSVMIQDGQMLVLGGLIDERAA 571 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + +P L IP LG LF ++ E+ + + P +++ D Sbjct: 572 ESESKVPFLGDIPYLGRLFTSTSTTVEKKNLMVFIKPTIIRDGMTSD 618 >gi|148546330|ref|YP_001266432.1| general secretion pathway protein D [Pseudomonas putida F1] gi|148510388|gb|ABQ77248.1| general secretion pathway protein D [Pseudomonas putida F1] Length = 584 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 104/267 (38%), Gaps = 26/267 (9%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + ++ L+I QV ++ IAEV +++G Q G G Sbjct: 272 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 330 Query: 239 --------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G + F+F +++AL+ + L+ PTL Sbjct: 331 ASIAGAAASGDSEALGDLLSTTTGATAGIGHFGGGFNFAMLINALKGKSGFNLLSTPTLL 390 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + AS G + + T S + ++ + GV L P + + L I Sbjct: 391 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQ 450 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EVS +A D+ + R+ T V + G ++L GL+ D++ + +PLL IP L Sbjct: 451 EVSSIADTSSASDVIT-NKREIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYL 509 Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421 G LFR+ + + + P +++ Sbjct: 510 GRLFRSDATRNTKQNLMVFIRPRILRD 536 >gi|325927911|ref|ZP_08189135.1| type IV pilus secretin PilQ/competence protein [Xanthomonas perforans 91-118] gi|325541751|gb|EGD13269.1| type IV pilus secretin PilQ/competence protein [Xanthomonas perforans 91-118] Length = 624 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 105/266 (39%), Gaps = 28/266 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228 +++++ ++ DQV ++ I + +G + + G+ + Sbjct: 354 RELISHIDRP-VDQVLIEGRIVIATDTFARDLGAKFGLGGTHTYGDNVATIGSGATGGGV 412 Query: 229 ----SFAADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + G + + F+ + L AL++ ++ P + + Sbjct: 413 AAGRGLNVNLPTGAFTSGATAPSLAYTLLGSNFNLDLELSALQQEGRGEVISNPRIVTSN 472 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + G + Y TV+ TG +V + + L TPT+ + R+ L + + Sbjct: 473 QREGVIKQGREIGYVTVTGGTGGQAATPNVQFKEVLLELKVTPTITNDNRVFLNMNVKKD 532 Query: 338 EPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 E + G +PS R+ +T V + G T+V+ G+ + + +P L +P L Sbjct: 533 EVDQLIELPLYGTVPSINRREINTAVLVDDGQTVVIGGVYEFTDRASVNKVPFLGDVPFL 592 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G LF++ + + E+ + TP +++ Sbjct: 593 GNLFKSRGRQKSKAELLVFITPKVLR 618 >gi|262377049|ref|ZP_06070275.1| general secretion pathway protein D [Acinetobacter lwoffii SH145] gi|262308087|gb|EEY89224.1| general secretion pathway protein D [Acinetobacter lwoffii SH145] Length = 710 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 53/281 (18%), Positives = 106/281 (37%), Gaps = 39/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228 + +++LL++ QV ++ I + K++G + I + Sbjct: 432 RNMVDLLDV-QVKQVMVEARIVRASTEFAKEMGVKWGILSQGITNNDHLLVGGSDTTLWD 490 Query: 229 ---------------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + D G + + F + + D F + L AL+ Sbjct: 491 LRTPEINSTTGIPTYEIQRPDNLNVDLGVENAAGRIAFGLISLSD-FMLDLELSALQADG 549 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVLSP 325 ++ P + Q A+ SG + Y++ S + + D + L TP++ Sbjct: 550 YGEVISTPKVLTADKQKATVESGVEVPYQSTEGSGANATATTEFKDVVLKLDVTPSITPD 609 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G++ + + S+ + GV + +T V + +G T+VL G+ + + + + Sbjct: 610 GKVQMSLDIS-SDSIAGVTPMGEYYLNKNRLNTNVLVENGETVVLGGIFEQETLNNQTKV 668 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P L IP LG LFR + + E+ I TP +V R+ Sbjct: 669 PFLGDIPYLGRLFRKDVKSDNKRELLIFVTPRIVNDSVSRN 709 >gi|238796139|ref|ZP_04639650.1| General secretion pathway protein D [Yersinia mollaretii ATCC 43969] gi|238720084|gb|EEQ11889.1| General secretion pathway protein D [Yersinia mollaretii ATCC 43969] Length = 625 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 113/296 (38%), Gaps = 22/296 (7%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192 +L G+ Q+ + + + + A +++ ++V+ L+I Sbjct: 271 ILTGVSSNQQEGKSSSAPAVAMMKNVVIKADAQTNALIINATPDLLRDLEQVITQLDIR- 329 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV ++ I EV+ D +G Q S G S + A+ S G + Sbjct: 330 RAQVLVEAIIVEVQDDDNLSLGVQWSNQHGGGSNFPDTGASASNAIASSLKGVTGLATGF 389 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSV 307 R ++ + AL LA P++ + A F+ G + + S +T +V Sbjct: 390 YRGNWSGLFTALRTNNQNDILATPSIVTLDNMEAEFSVGQEVPVLSGSQTTTGDNIFRTV 449 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPS 364 G+ L P + + L I+ EVS +G ++ R V + S Sbjct: 450 DRKSVGIKLKVKPQINKGDSVLLEIEQEVSSVAAKAPSGTGDLGATFNSRTVKNAVMVGS 509 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +V+ GLL Q + +PLL IP +G LFR++ + + + P +++ Sbjct: 510 NNIVVVGGLLDSTSQDITSKVPLLGDIPGVGFLFRSTTQKMVKRNLMLFIRPTIIR 565 >gi|167626079|ref|YP_001676373.1| general secretion pathway protein D [Shewanella halifaxensis HAW-EB4] gi|167356101|gb|ABZ78714.1| general secretion pathway protein D [Shewanella halifaxensis HAW-EB4] Length = 720 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 65/280 (23%), Positives = 109/280 (38%), Gaps = 43/280 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 394 Query: 236 -------GKFVSEGGD---------------------FSVKGVLDRFSFETVLHALERAT 267 G V G + + F ++ A+ T Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDT 454 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPT 321 LA P++T + Q ASF G + T S ++ +V + GV L P Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 V + L I+ EVS I G ++ R+ TTV SG +VL GL+K+++Q+ Sbjct: 515 VNEGNAVKLTIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLIKEEVQES 572 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +P L IPI+G LF++S +++T + + P +++ Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKTNLMVFIKPTIIRD 612 >gi|85712729|ref|ZP_01043774.1| Type II secretory pathway, component PulD [Idiomarina baltica OS145] gi|85693461|gb|EAQ31414.1| Type II secretory pathway, component PulD [Idiomarina baltica OS145] Length = 695 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 115/302 (38%), Gaps = 49/302 (16%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------------- 217 ++ + V+ L+I QV ++ I EV G Q Sbjct: 340 AALENVIRDLDIR-RAQVQVEAIIVEVLEGDNVDFGIQWISENGGLVQYNTGNQVPIGSL 398 Query: 218 ---SITGSSSGPSKSFAADFGGKFVSEGGD---------FSVKGVLDRF-------SFET 258 + + + G+ V+ ++ G ++ + Sbjct: 399 AAAAYQARPREGTSVTTVNDNGQTVTTTNPEERGNLELLANLLGNVNGMMFGTIQNDWAA 458 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYG 313 V+ A+ + T LA P++ + + ASF G + T S+ +V + G Sbjct: 459 VVQAVSQDTNSNILATPSIVTVDNEEASFLVGQEVPTITGSTLGNDNQSPFQTVDRQEIG 518 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + L TP + + + I+ EVS + + R+ TTV G TIVL GL Sbjct: 519 IKLKVTPQINEGNAVQMVIEQEVSSLSGATSVDVI--VNKRELKTTVMAEDGETIVLGGL 576 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDD 432 + +D+Q+ IPLL IP +G LF ++ + ++ + + P +V+ + D+S+ Sbjct: 577 IDEDVQESVSKIPLLGDIPFIGRLFSSTSTSTQKRNLMVFIRPTIVRNGSKLSDISKQKY 636 Query: 433 HY 434 +Y Sbjct: 637 NY 638 >gi|319944026|ref|ZP_08018306.1| type II and III secretion system protein [Lautropia mirabilis ATCC 51599] gi|319742787|gb|EFV95194.1| type II and III secretion system protein [Lautropia mirabilis ATCC 51599] Length = 837 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 62/271 (22%), Positives = 105/271 (38%), Gaps = 30/271 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------SITGSSSGPSK 228 + V++ L+ QV ++ I EV+ D + ++G Q T SSG S Sbjct: 407 RGVIDQLDSR-RAQVYIESLIVEVKADTVSEMGIQWQFGTSRPGQNSVVGGTNFSSGGSN 465 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDR--------FSFETVLHALERATAIRTLAEPTLTAI 280 + ++ G +V V + + + ALE T A P L + Sbjct: 466 ILSVTQNPAALAAAGGLNVGVVRNGVSLFGQTFLNLGLLARALEAETNSNIRATPNLLTL 525 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + A G + T +T + + D G +L P V G + + I Sbjct: 526 DNEEARIIIGQNVPFVTGQYATTNNTLSSPFQTIERKDVGTMLRVRPQVSEGGTVKMEIA 585 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 E+S V + + + R D+ V + G +VL GL++D ++ +PLL IP Sbjct: 586 QEISAVVDTTQSAGIIT-NRRAIDSNVLVDDGQIVVLGGLIEDTVEGGISKVPLLGDIPG 644 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM 424 LG LFR R +T + I P +++ Sbjct: 645 LGRLFRYDNRKRVKTNLLIFLRPVVLRSADQ 675 >gi|326315788|ref|YP_004233460.1| type IV pilus secretin PilQ [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372624|gb|ADX44893.1| type IV pilus secretin PilQ [Acidovorax avenae subsp. avenae ATCC 19860] Length = 715 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 109/281 (38%), Gaps = 47/281 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF-------------------------- 215 +++++ L++A QV ++ I E R + +G Sbjct: 432 RQLLSTLDVA-VRQVMIEARIVEARDTFGRSLGVRLGGADLRANRGGDGGYSVGGNNRLA 490 Query: 216 -----QHSITGSSSGPSKSFAADFGGK-FVSEGGDFSVKGVLDRFS-----------FET 258 +++ S G + + +D G FV+ S F+ Sbjct: 491 IGTSYNNAVASSGGGGTVATGSDAAGSTFVNLPAALSSGASFGNFALTLFNSAANRFLTL 550 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 L A+E + ++ P L A G ++ Y +V++ GAT++ + L Sbjct: 551 ELSAMEADGQGKVVSSPRLITADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEV 609 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 TP + G I L + +V++ G + T V + +GGT+V+ G+ + + Sbjct: 610 TPQITPEGNIILDL--DVNKDSKGETTTQGVAIDTNHVKTQVLVENGGTVVIGGIFRLEE 667 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + IPLL +P++G LF+N + E+ + TP ++ Sbjct: 668 TNQENKIPLLGDVPVVGNLFKNRTRESTKREMLVFITPKVI 708 >gi|224826467|ref|ZP_03699569.1| type II and III secretion system protein [Lutiella nitroferrum 2002] gi|224601568|gb|EEG07749.1| type II and III secretion system protein [Lutiella nitroferrum 2002] Length = 659 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 88/427 (20%), Positives = 159/427 (37%), Gaps = 70/427 (16%) Query: 53 GLNKVIILQVPVDVQ-DVLVSDPTKADVV------------VHSPRTMYLFGKNVGQANV 99 G+N V V D++ + V + T D + V + T+ ++ N + Sbjct: 196 GINFVFDKDVRPDLKATIFVRNSTIEDAIQLLLVTNQLDRRVLNDNTIMVYPNNPAKQK- 254 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + + N + + +R + ++ V+ + VV+ D+ Sbjct: 255 ---DYQELVIKNFYLA-NAEAKDTANLIRALLKTRDVFVDDKRNLVVMR-------DTPE 303 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 AV+++E ++ E + L V + EV R L+ +G Sbjct: 304 AVKVAERLIASQD------------------LAEPEAILDVEVVEVNRARLQSLGIDWPS 345 Query: 220 T------------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET--- 258 ++G V+ G L +F Sbjct: 346 QVGYGLLTGGTSTQTGTVTNPTTGAVTPVVTPGVAATVASGVINLRNNPLGLTTFIANPA 405 Query: 259 -VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGV 314 VLH + T LA P + + + A G + T ++ A SV+ D GV Sbjct: 406 LVLHLQAQDTDANVLANPRIRVKNHEKAKIHIGDKVPVFTSTAVVNAGIAQSVSYLDVGV 465 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLAG 372 L P++ + + + EVS V V+ G +Y++ R ADTT+ L G T VLAG Sbjct: 466 KLEVKPSIGLDDDVTIDVGLEVSSIVKQVDFGTSTAYQIGSRAADTTLRLRDGETQVLAG 525 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L++D+ ++ IP L +PI+G LF ++ +R ++EI + TP +V + + D + Sbjct: 526 LIQDEDRRSITKIPGLGDLPIVGRLFSSNNDSRSKSEIVLLITPHIVHNLDLPDRQISEF 585 Query: 433 HYSVEDD 439 E Sbjct: 586 RAGTESS 592 >gi|327538204|gb|EGF24886.1| general secretion pathway protein D (outD) [Rhodopirellula baltica WH47] Length = 822 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 79/397 (19%), Positives = 154/397 (38%), Gaps = 52/397 (13%) Query: 46 KGKKISIGLNKVIILQVPVDVQDV---LVSDPTKADVVVHSPRTMYLFGKNVG---QANV 99 +G+ IG ++++ ++ V L++ +A V S + G + G A+ Sbjct: 231 RGRIQPIGRGAILVVDSKDNIDRVQQMLIAMLPEATVQSTSNPS---DGTSPGFQRPASP 287 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI-RVEMVSDTVVLHGMVRTIQDSQ 158 + +++ L + + +L + + I V + +++ G ++ + Sbjct: 288 NVYDAMATEIIYLTPQFTE-ASEMRESLEGALGEGTIVSVYEAENRILIKGNRAQLELAS 346 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + L++ QV + I +V + L+++G Sbjct: 347 QAFK------------------------QLDVP-RAQVRITALIYDVSLEELEELGVNWG 381 Query: 219 ITGSSSGPSKSFAADFGGKF----------VSEGGDFSVKGVLDRFSFETVLHALERATA 268 +S AD G F ++ + D F +L AL+ + Sbjct: 382 RGFRLDTTDESALADLAGNVEKAVTFGTLGSGGASSFGIRTLTDTFDTSVLLRALDSSDE 441 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLS 324 + LA+P++TAI + AS Q S + G+ V D G++L TP + + Sbjct: 442 AKLLADPSITAIDRREASIKIVQQIPIVAASPAEGSNVVFAQVEFKDAGIILKVTPRISN 501 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 I L++Q E S V + P R A+TTV + +G L GL + I + G Sbjct: 502 DNTIELQVQPEYSVKVGEIENN--PVIDSRTAETTVRVANGHMFTLGGLRQKRIIEGTSG 559 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P L + +G LFR+ E+E+ + P ++ P Sbjct: 560 VPYLRDLKYVGKLFRSHSTEVRESELIVFLKPEIISP 596 >gi|91794695|ref|YP_564346.1| type II and III secretion system protein [Shewanella denitrificans OS217] gi|91716697|gb|ABE56623.1| type II and III secretion system protein [Shewanella denitrificans OS217] Length = 549 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 108/264 (40%), Gaps = 24/264 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L+ I EV Q G Q + G +S + GV Sbjct: 276 QRQVILEAKIVEVTLSDGYQQGIQWDNVLGHIDSTNIEFGTAKGPNLSNSITSVLGGVTS 335 Query: 253 ----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GAT 305 F T++ L+ + L+ P +TA + Q A G + T SST G Sbjct: 336 LSVKNTDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGNDEYFVTKVSSTTVTGTN 395 Query: 306 SVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMP-- 349 +TT + G+ L TP + S G + L + V + + ++ ++P Sbjct: 396 PITTPEVELTPFFSGIALDVTPQIDSEGNVLLHVHPSVIKVTEQIKDIQINGSSSELPLA 455 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R++DT + SG +++ GL+K D ++ +PLL IP+LG +F N ++TE Sbjct: 456 QSEIRESDTVIRAASGDVVIIGGLMKSDNVEMVSKVPLLGDIPLLGEIFTNRSKQMKKTE 515 Query: 410 IFIAATPFLVK-PVAMRDLSRPDD 432 + I P +V +L R D Sbjct: 516 LIIMLKPTVVGVDTWREELKRSKD 539 >gi|157373684|ref|YP_001472284.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sediminis HAW-EB3] gi|157316058|gb|ABV35156.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sediminis HAW-EB3] Length = 567 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 69/275 (25%), Positives = 121/275 (44%), Gaps = 28/275 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + QV L+ I EV Q G Q ++ G +F + + + ++ GV Sbjct: 287 QRQVILEAKILEVTLSDGYQQGIQWDNVLGHVGSTDITFGTSENTEGLGDLITNAIGGVT 346 Query: 252 D----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GA 304 +F T+++ L+ + L+ P +TA + Q A G + T SST G Sbjct: 347 SLSVKGSNFNTMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGT 406 Query: 305 TSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGD----M 348 T VTT + G+ L TP + G I L I V VI ++ + Sbjct: 407 TPVTTPEVELTPFFSGIALDVTPQIDGEGNILLHIHPSVIDIKEQTKVIKISGSSLELPL 466 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 +R++DT ++ +G +V+ GL+K + +++ +PLL IP++G LF N + ++T Sbjct: 467 AQSDIRESDTVIKAKTGDVVVIGGLMKSENIEVESKVPLLGDIPLVGELFTNRSKSLKKT 526 Query: 409 EIFIAATPFLV-KPVAMRDLSRPD---DHYSVEDD 439 E+ I P +V ++L + D + E+D Sbjct: 527 ELVILLKPTVVGADTWRKELQKSKALLDRWYPEED 561 >gi|157376152|ref|YP_001474752.1| Type II secretory pathway component PulD-like protein [Shewanella sediminis HAW-EB3] gi|157318526|gb|ABV37624.1| Type II secretory pathway component PulD-like protein [Shewanella sediminis HAW-EB3] Length = 696 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 120/243 (49%), Gaps = 14/243 (5%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ ++I QV L VTIAEV+ + GF+ ++ SSG G GG Sbjct: 440 LVQRMDIL-PKQVLLSVTIAEVKLTGEFKRGFEFAL---SSGNFSGSTKGGLGLDEIVGG 495 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 FS K + E + +E + + L++P+L G A+ G + + SSS+G Sbjct: 496 TFSWKSGAN----EIIGKFVEENSQVNILSKPSLLVRDGTEANINVGDKIPVSSGSSSSG 551 Query: 304 -----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKAD 357 ++T + G+ L TPTV + G + + I E+S V+G V G P++ R Sbjct: 552 SGEVVTENITYRETGIKLTVTPTVNAQGVVIMEINQEISNQVVGPVGKGGNPTFFDRSIK 611 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V +G TI+L GL+ DD +G+P L IP++GALF + N +TE+ I TP Sbjct: 612 TEVVADTGQTILLGGLISDDTTNSNKGVPYLKSIPLIGALFESDSKNNTKTELVIMVTPK 671 Query: 418 LVK 420 +V+ Sbjct: 672 IVE 674 >gi|170729053|ref|YP_001763079.1| general secretion pathway protein D [Shewanella woodyi ATCC 51908] gi|169814400|gb|ACA88984.1| general secretion pathway protein D [Shewanella woodyi ATCC 51908] Length = 714 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 61/284 (21%), Positives = 108/284 (38%), Gaps = 47/284 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVSEGDDVGFGVQWATAAGGGTQFNNLGPTIGEIGAGV 396 Query: 236 --------GKFVSEGGDF------------------------SVKGVLDRFSFETVLHAL 263 + S GD + + F ++ A+ Sbjct: 397 WNARDQKASQTCSGSGDNQTCTDNPDTPGDITLLAQALGKVNGMAWGVAMGDFGALIQAV 456 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLH 317 T LA P++T + Q ASF G + T + ++ +V + GV L Sbjct: 457 SSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGAQNSSNGNSNPFQTVERKEVGVKLK 516 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + + L I+ EVS I G ++ R+ TTV SG +VL GL+ ++ Sbjct: 517 VVPQINEGSSVKLTIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLINEE 574 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +Q+ + +P L IPI+G LF++S +++ + + P +++ Sbjct: 575 VQESVQKVPFLGDIPIIGHLFKSSSSGKKKKNLMVFIKPTIIRD 618 >gi|88858853|ref|ZP_01133494.1| general (Type II) secretion pathway (GSP) D protein [Pseudoalteromonas tunicata D2] gi|88819079|gb|EAR28893.1| general (Type II) secretion pathway (GSP) D protein [Pseudoalteromonas tunicata D2] Length = 685 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 105/243 (43%), Gaps = 18/243 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGKFVSEGGDFSVKGV 250 Q+ L+V IAEV + G + + + G S +F D G + + Sbjct: 434 PKQIMLEVIIAEVSLTNEFKQGVEFAFKNGNYGTSTEKAFMGD---------GFGGLSYL 484 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------TVSSSTGA 304 L + +++ L+ + + L+ P+L G +A+ G ++ Sbjct: 485 LQGTQGKLIVNLLQTNSLVNILSRPSLVVRDGVNATINVGTDIPIVGETASDPINGDRQT 544 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELP 363 T + GV L TPTV + G + + I+ ++S V G PS R +T V Sbjct: 545 TKIEYRKTGVELAVTPTVNAQGIVLMEIKQKISNQVESGSTVSGNPSVFERTINTEVVAE 604 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SG TI+L GL+ ++ +P S IPILG LFR + ++TE+ I TP +++ + Sbjct: 605 SGQTIILGGLISENKSTKASRVPFFSGIPILGNLFRADTESGDKTELVILVTPRVIESSS 664 Query: 424 MRD 426 D Sbjct: 665 EWD 667 >gi|188990354|ref|YP_001902364.1| Fimbrial assembly protein pilQ precursor [Xanthomonas campestris pv. campestris str. B100] gi|167732114|emb|CAP50306.1| Fimbrial assembly protein pilQ precursor [Xanthomonas campestris pv. campestris] Length = 626 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 107/266 (40%), Gaps = 28/266 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228 +++++ ++ DQV ++ I + +G + + G+ + Sbjct: 356 RELISHIDRP-VDQVLIEGRIVIATDTFARDLGAKFGLGGTHTYGDNVATIGSGATGGGV 414 Query: 229 ----SFAADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + + G + + F+ + L AL++ ++ P + + Sbjct: 415 AAGRGLNVNLPTGAFTSGATAPSLAYTLLGSNFNLDLELSALQQEGRGEVISNPRIVTSN 474 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + G + Y T++ T +V + + L TPT+ + R+ L + + Sbjct: 475 QREGVIKQGREIGYVTITGGTAGQAATPNVQFKEVLLELKVTPTITNDNRVFLNMNVKKD 534 Query: 338 EPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 E + N G +PS R+ +T V + G T+V+ G+ + + +P L +P L Sbjct: 535 EVDELIELPNYGTVPSINRREINTAVLVDDGQTVVIGGVYEFSDRSSVNKVPFLGDVPFL 594 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G LF++ ++++ E+ I TP +++ Sbjct: 595 GNLFKSRGRSKDKAELLIFITPKVLR 620 >gi|153215373|ref|ZP_01949971.1| MSHA biogenesis protein MshL [Vibrio cholerae 1587] gi|124114744|gb|EAY33564.1| MSHA biogenesis protein MshL [Vibrio cholerae 1587] Length = 559 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 67/277 (24%), Positives = 109/277 (39%), Gaps = 41/277 (14%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----D 233 ++V L I+ + QV L+ I EV Q G S SS+G S + + D Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQD 320 Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G ++ GG +V V+ SF+ V+ + + L+ P +TA + Sbjct: 321 SNGNPITSVLPGLDAIGNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 378 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331 Q A G Y T SS T ++T G+ L TP + G + L Sbjct: 379 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 438 Query: 332 IQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + V E + +R++D+ + G +V+ GL+K + Sbjct: 439 VHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 498 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 499 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535 >gi|152988863|ref|YP_001351096.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa PA7] gi|150964021|gb|ABR86046.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa PA7] Length = 714 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 106/287 (36%), Gaps = 39/287 (13%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------- 218 + Q +++++ L+I QV ++ I E K +G + Sbjct: 428 QPQDRLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNWNAYGKD 486 Query: 219 ---------------ITGSSSGPSKSFA------ADFGGKFVSEGGDFSVKGVLDRFSFE 257 I G+ S P+ D G K + G + + D + Sbjct: 487 GNMGIKDEEGLNCGPIAGNCSFPTVGTNKSPSPFVDIGAKDATSG--IGIGFITDNIILD 544 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 L A+E+ +++P + ++A G + Y+ SSS ++ + + + L Sbjct: 545 LQLSAMEKTGNGEIISQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLE 603 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 TP + RI + ++ P +P + + + + G TIV+ G+ ++ Sbjct: 604 VTPQITPDNRIIVEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNE 663 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + + +P L +P LG LFR + E+ + P ++ A+ Sbjct: 664 QTKAVDKVPFLGDLPYLGRLFRRDTVVDRKNELLVFLAPRIMNNQAI 710 >gi|307293364|ref|ZP_07573210.1| general secretion pathway protein D [Sphingobium chlorophenolicum L-1] gi|306881430|gb|EFN12646.1| general secretion pathway protein D [Sphingobium chlorophenolicum L-1] Length = 716 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 139/360 (38%), Gaps = 25/360 (6%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 G ++ I ++R + ++ +++ + V++ ++ I D+ Sbjct: 312 SRGPAIVTRYEGANAIIVAANSDVQRMLGETVRQLDTRREQVLVEAIIVEISDAAAKKLG 371 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITG 221 + + + A + S NLL IAG + T EV + + Sbjct: 372 VQFLIGSTKTGFAATNYSNAQPNLLTIAGAVAARELGDSTTVEVNNGTTTTTTRSRNSSD 431 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S ++ G GG + G F +++A++ T L+ P++ + Sbjct: 432 LESTLQEAAFNSLTGASGIIGGLGTQIG--RNGIFGAIINAVKSDTDSNILSTPSVMTLD 489 Query: 282 GQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 Q AS G Q T + +V D G+ L P + + G I L ++ EV Sbjct: 490 NQKASILVGQQVPITTGEALSQNFDNQFRTVQRQDVGIKLEVKPQINTGGAIKLFLKQEV 549 Query: 337 SEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S V N+ R+ +TTV + G + L GLL D+ ++ E IPLLS IP +G Sbjct: 550 SSVAGPVSNSNTDLIINKREIETTVTVDDGEILALGGLLDDNERKTIERIPLLSDIPGIG 609 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 LF++ +R +T + + P +++ ++DA+ R I G + Sbjct: 610 ELFKSRSKSRTKTNLMVFIRPTILR---------------SKEDAQKLTQQRYGYIRGMQ 654 >gi|88799076|ref|ZP_01114657.1| Type II secretory pathway, component PulD [Reinekea sp. MED297] gi|88778303|gb|EAR09497.1| Type II secretory pathway, component PulD [Reinekea sp. MED297] Length = 653 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 116/306 (37%), Gaps = 33/306 (10%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G + E + +++ L+I +QV ++ I EV Sbjct: 298 SGQNEPPSQPISVLADEEQNALIVRAEPSDMKELESIISQLDIP-REQVLIEAAIVEVTG 356 Query: 208 DILKQIGFQH--------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-- 251 + +G Q S++ +G S A G+ +S+ G + + Sbjct: 357 NDTDTLGVQWATNPEVVQDGVPFLSVSSEVAGASVGNLAQSVGQGISQAGGSPLGALTSV 416 Query: 252 -------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 +R F + ALE A+ L+ P++ + A T G +KT Sbjct: 417 PAGTFMGLADPFGNRVDFGVAIQALESASNTNFLSTPSILTLDNSEAVITVGNSVPFKTG 476 Query: 299 SSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRK 355 S ++ D G L P + G I L + V V+ + R+ Sbjct: 477 GSGDEDNPFTIERQDVGTTLTVIPHIQQNGTIRLEVDQIVESVDETVSYDASDVVTKKRQ 536 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V + SG TIVL GL++D + +L+ +P+L IPI+G LF++ + +T + I Sbjct: 537 VTTQVLVNSGETIVLGGLIQDQVSELESRVPVLGYIPIIGHLFKSKSTLKTKTNLLIILK 596 Query: 416 PFLVKP 421 P +++ Sbjct: 597 PSVIED 602 >gi|114328429|ref|YP_745586.1| general secretion pathway protein D [Granulibacter bethesdensis CGDNIH1] gi|114316603|gb|ABI62663.1| general secretion pathway protein D [Granulibacter bethesdensis CGDNIH1] Length = 779 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 113/263 (42%), Gaps = 15/263 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSGPSKSFAADFGGKFVSEGGDFS 246 QV + IAEV + + G Q + + + + A GG + FS Sbjct: 488 PLQVRIDAIIAEVALNDTLRYGTQFFFREGGLNSAMQTAAATAATASTGGLLAAAIPGFS 547 Query: 247 VKGVL-DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVS 299 +L S + + L+ T ++ L+ P L + + A G Y T+ Sbjct: 548 NGFLLTGSSSSQLAMTLLQSVTKVQVLSSPELMVLDNEPARLQVGALVPYLTAQSQATIG 607 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKAD 357 S +V+ GV+L+ TP V + G + L I EVS+ +N + P+++ R Sbjct: 608 QSAIINAVSYQQTGVILNVTPRVNNSGLVTLDISQEVSDVDTSINTNGISSPAFQQRSVQ 667 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + V + G T+ LAGL++D+ + G+P L +P+LG++F NR TE+ I TP Sbjct: 668 SRVVVQDGQTVGLAGLIRDNNSRANGGVPFLKDVPVLGSVFGQQNNNRSRTELLILVTPH 727 Query: 418 LVKPVAMRDLSRPDDHYSVEDDA 440 ++ D ++ D A Sbjct: 728 VIHDQRDARALTEDLRQNLRDAA 750 >gi|56476683|ref|YP_158272.1| fimbrial type-IV assembly protein PilQ [Aromatoleum aromaticum EbN1] gi|56312726|emb|CAI07371.1| fimbrial type-IV assembly protein PilQ [Aromatoleum aromaticum EbN1] Length = 721 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 103/267 (38%), Gaps = 41/267 (15%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI----------------------------TGSSS 224 QV ++ I E +D + +G + + TG ++ Sbjct: 449 PRQVMIEARIVEANKDFARDLGVRLGVGGVGGRTVGFDANGRPIRRATVGGGLENTGFNA 508 Query: 225 GPS--------KSFAADFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTL 272 G + + + GG + VL + L ALE R + Sbjct: 509 GQTVAATDAQVATVPGGLNVNLPAPGGSGVLSAVLWNNTATRFLNLELSALESDGRGRIV 568 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + P + + A G + Y +SS GA S+ + L P + GR+ L + Sbjct: 569 SSPRVLTANQVEAVIEQGTKIPYPEKTSS-GAASIKFEKAVLSLKVKPQITPEGRVQLFV 627 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 P + P+ + T V + +GGT+V+ G+ +++ IPLL ++P Sbjct: 628 LVNKDRPDFARSVEGTPTVVTKNIQTEVLVENGGTVVIGGIYEEEETDSVTRIPLLGEVP 687 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 ++GALFRN+ N + +E+ I TP +V Sbjct: 688 LVGALFRNTIKNSKRSELLIFITPRIV 714 >gi|121603667|ref|YP_980996.1| general secretion pathway protein D [Polaromonas naphthalenivorans CJ2] gi|120592636|gb|ABM36075.1| general secretion pathway protein D [Polaromonas naphthalenivorans CJ2] Length = 738 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 67/300 (22%), Positives = 113/300 (37%), Gaps = 38/300 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V+ L+ A QV ++ IAEV D + G Q G G S G F S Sbjct: 398 RAVIEKLD-ARRAQVYVESLIAEVNMDKAAEFGIQW--QGPIGGKGDSLIGLLGTNFGSS 454 Query: 242 G------------------GDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTA 279 G G GV R + + + L+ + A L+ P L Sbjct: 455 GKNIIQSAIGAASGTPLAPGTGLNLGVAARSNGVYFLGFLANFLQTSGAGNILSTPNLLT 514 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRI 328 + + A G + T + + ++ D G+ L P + G + Sbjct: 515 LDNEEAKIIIGQNVPFVTGQFTNTGSGGSNGSVNPFQTIERKDVGLTLRVKPQISENGTV 574 Query: 329 GLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + I EVS G VN+ R ++ V + G IV+ GLL+D+ +E +P Sbjct: 575 KMAIFQEVSSVQPGSVNSVTGLITNKRSIESHVLVEDGSIIVIGGLLQDEFAGNQEKVPG 634 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFN 446 L +P+ G LF++ +R++T + + P +V+ A LS + + + N Sbjct: 635 LGDVPVFGNLFKSESRSRKKTNLMVFLRPVVVRDGAATSALSMDRYEFMRTNQQQTQPLN 694 >gi|229530247|ref|ZP_04419635.1| MSHA biogenesis protein MshL [Vibrio cholerae 12129(1)] gi|229332020|gb|EEN97508.1| MSHA biogenesis protein MshL [Vibrio cholerae 12129(1)] Length = 559 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 67/277 (24%), Positives = 108/277 (38%), Gaps = 41/277 (14%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233 ++V L I+ + QV L+ I EV Q G S SS+G S + D Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQD 320 Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G ++ GG +V V+ SF+ V+ + + L+ P +TA + Sbjct: 321 SSGNPITSVLPGLDAIGNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 378 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331 Q A G Y T SS T ++T G+ L TP + G + L Sbjct: 379 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 438 Query: 332 IQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + V E + +R++D+ + G +V+ GL+K + Sbjct: 439 VHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 498 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 499 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535 >gi|197104120|ref|YP_002129497.1| type II secretory pathway protein D [Phenylobacterium zucineum HLK1] gi|196477540|gb|ACG77068.1| type II secretory pathway protein D [Phenylobacterium zucineum HLK1] Length = 686 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 123/331 (37%), Gaps = 48/331 (14%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKK----VMNLLNIAGEDQVTLKVTIAEVR 206 T + +A + + A+ +++ V+ L++ QV ++ + EV Sbjct: 318 AATPTAAGQARANIARYPGANAIVIAADPETQRMLAEVIRQLDVR-RRQVLVEAIVVEVS 376 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV---------------- 250 + K++G Q ++ G + A + + Sbjct: 377 DEAAKRLGVQFALAGINGSAIPFTATSYSNSAPNLPAVIGAVAAEKNLPDDDATKALLRD 436 Query: 251 --------------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 D F V++A++ TA L+ P++ + Q A+ G Sbjct: 437 AAVRSLLAANGALIGGGGQIGDDALFGLVINAVKSDTASNLLSTPSVMTLDNQPATILVG 496 Query: 291 GQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 + T S ++ + GV L TP + + G I L ++ EVS ++A Sbjct: 497 QEVPITTGESLGANNENPFRTIARQNVGVQLEVTPQINAGGTITLFLRQEVSAVAGPISA 556 Query: 346 G-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 R+ +TTV + G IVL GLL D + E P+L IP LGALFR + Sbjct: 557 NFTELVLNKREIETTVNVDDGEIIVLGGLLSQDERASVEKTPVLGDIPGLGALFRGTNKA 616 Query: 405 REETEIFIAATPFLVKPVA-MRDLSRPDDHY 434 + +T + + P +V A R ++ P Y Sbjct: 617 KTKTNLMVFIRPKIVGDAAGARAVTGPKYEY 647 >gi|193078561|gb|ABO13584.2| putative outer membrane protein (ComQ) [Acinetobacter baumannii ATCC 17978] Length = 721 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 39/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 +K+++LL++ QV ++ I K++G + I + + Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 501 Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 D G + F + + D F + L AL+ Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 560 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325 ++ P + Q+A +G Q Y++ ++S ++ + D + L+ TP++ Sbjct: 561 YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 620 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G+I +++ G++ +T V + +G T++L G+ + + + Sbjct: 621 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKV 679 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 680 PFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720 >gi|126643202|ref|YP_001086186.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii ATCC 17978] Length = 695 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 39/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 +K+++LL++ QV ++ I K++G + I + + Sbjct: 417 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 475 Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 D G + F + + D F + L AL+ Sbjct: 476 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 534 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325 ++ P + Q+A +G Q Y++ ++S ++ + D + L+ TP++ Sbjct: 535 YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 594 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G+I +++ G++ +T V + +G T++L G+ + + + Sbjct: 595 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKV 653 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 654 PFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 694 >gi|262163787|ref|ZP_06031527.1| S-protein secretion component D [Vibrio mimicus VM223] gi|262027767|gb|EEY46432.1| S-protein secretion component D [Vibrio mimicus VM223] Length = 713 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 95/233 (40%), Gaps = 20/233 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ TIAE+ D +Q G IT + A F +S G F Sbjct: 468 PQQVLIQATIAEINIDDAQQFGVDFDITSGTITGGTKGLAGFDNGVLSLTGVFG------ 521 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATS 306 A + + L+ P + A++ ++A T G Q T S G T+ Sbjct: 522 --DVTMGFRAALKTGKAQVLSSPRIIAMNQEAARITVGDQIQVVTGEVSGGGDDSKATTT 579 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 D GV L PT+ G + L I EVS G + R T + SG Sbjct: 580 YKYVDTGVTLDIIPTINQNGLVELEISQEVSNKGTGTD------INKRSLQTKLLADSGD 633 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T+ + GL+K DI + +PLL IP LG LF+ ++ E+ + TP+++ Sbjct: 634 TVFMGGLIKQDIGETDNRVPLLGDIPYLGNLFKYKSQTQKSVELVLLITPYVI 686 >gi|34499269|ref|NP_903484.1| type II secretion system protein [Chromobacterium violaceum ATCC 12472] gi|34105120|gb|AAQ61476.1| probable type II secretion system protein [Chromobacterium violaceum ATCC 12472] Length = 708 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 65/297 (21%), Positives = 114/297 (38%), Gaps = 38/297 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--------------PS 227 + V++LL+ QV ++ + EV +IG Q + +G P Sbjct: 370 RNVIDLLDKR-RAQVYVEALVMEVTASRATKIGVQWAANVHGNGLIGNSLPSPSKPLVPG 428 Query: 228 KSFAADFGGKFVSE------GGDFSVK-------GVLDRFSFETVLHALERATAIRTLAE 274 S A+D G + GG + G + + ALE+ +A Sbjct: 429 GSGASDTPGTALGSLVSSLTGGGLTAAIINTITVGGQQIPTLGLLAQALEQEAQGNLVAS 488 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTVLSPG 326 P L + + A G + T + G + G L TP + G Sbjct: 489 PQLVTMDNEKAKIVIGQEIGVPTATYPAGTNGTSNAPYSTYDRKTVGFGLEITPQISEGG 548 Query: 327 RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I ++I S ++A P++ R DT V + GG + L GL ++ ++ + Sbjct: 549 TIRMKISQAADSIDQTTLSAAAGPTFNRRTLDTVVTVGDGGLVALGGLTQETTSNAEDKV 608 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAK 441 PLL IP++G LF+ R++T + I P +++ R ++ Y +ED A+ Sbjct: 609 PLLGDIPVIGNLFKYQGKERKKTNLMIFIRPTIIRDEIGNRAVAGERYGYVMEDAAR 665 >gi|269964603|ref|ZP_06178842.1| General secretion pathway protein D [Vibrio alginolyticus 40B] gi|269830730|gb|EEZ84950.1| General secretion pathway protein D [Vibrio alginolyticus 40B] Length = 286 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 6/201 (2%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + D+ + G + + ++ A+ + L+ P++T + ASF G Sbjct: 31 SGDYSTLASALSGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSITVMDNGEASFIVG 90 Query: 291 GQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 + T S++ +V + G+ L P + + L I+ EVS V+G N Sbjct: 91 EEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSN-VLGANG 149 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LF+++ Sbjct: 150 AVDVRFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHLFKSTSTQT 209 Query: 406 EETEIFIAATPFLVKPVAMRD 426 E+ + + P +++ D Sbjct: 210 EKRNLMVFIKPTIIRDGVTAD 230 >gi|91776764|ref|YP_546520.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91710751|gb|ABE50679.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 657 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 76/349 (21%), Positives = 140/349 (40%), Gaps = 46/349 (13%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS------QSGRNQY 176 L ++ +++ D +V+ T ++ + +T L N Sbjct: 246 LSENTALVFPNTAAKLKDYQD-LVIRNFYLTNAKAKDVSTMIKTMLKTKDVHTDERLNMI 304 Query: 177 ANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSK 228 + +V+ + N + +V L++ + EV R+ L+++G + S+T S+ Sbjct: 305 VIRDTPEVVRIAEKLVAANDLADPEVMLEIEVMEVSRERLQELGIDYPTSLTASAGLSID 364 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + ++ G ++ F+ L+ + I LA P + + A Sbjct: 365 AMRSNNSGTYL--------------FNSNPTLNFRKTTGDINILANPRIRVRNNDKAQVL 410 Query: 289 SGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344 G + T ++ G + SV D G+ L P + + ++I EVS Sbjct: 411 VGDKVPVITTVATAGVGSSQSVQYLDVGLKLEAEPRITLDDFVNIKIALEVSSLGSSTTL 470 Query: 345 --AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + R A T + L G T +LAGL+ D+ ++ +P L IP+LG LF N Sbjct: 471 NGGGVVYQIGTRNASTLLRLKDGETQILAGLINDEERRNTSRLPGLGDIPLLGRLFSNQT 530 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 NR++TEI +A TP +V ++SRP E + ++ N I Sbjct: 531 DNRKKTEIVLAITPHVV-----NNISRP------ESEVLEYWSGTENGI 568 >gi|186477543|ref|YP_001859013.1| type IV pilus secretin PilQ [Burkholderia phymatum STM815] gi|184194002|gb|ACC71967.1| type IV pilus secretin PilQ [Burkholderia phymatum STM815] Length = 523 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 61/313 (19%), Positives = 114/313 (36%), Gaps = 16/313 (5%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 A LE R E + + G R + A+ T L + Sbjct: 213 AAELEPLASRTFELHYAHAEELRKLLTASGNQRVLSKRGAAMADPRTNLLFVTDLAARLA 272 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------SGPS 227 +++ L+ QV ++ I E + + +G + S+ G++ G Sbjct: 273 QIAELVASLDRPT-RQVLIEARIVEAEKGFSRNLGVKLSMIGTNEDGKATGLVGGKDGAI 331 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 +A F + ++ L ALE + ++ P + A Sbjct: 332 LDLSARPVSGFDAATMGLTLFAAQATRLVNIELSALEAEGRGQIVSSPRVVTADRMKAVV 391 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 392 EQGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVAKDSVGEQTAS 448 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P+ + T VE+ GGT+ + G+ + D + +PLL KIP+LG FR+ Sbjct: 449 GPAINTKHVQTRVEVEDGGTVSIGGIYETDGRDDVTRVPLLGKIPVLGVFFRHRAHRDLR 508 Query: 408 TEIFIAATPFLVK 420 +E+ + TP +V+ Sbjct: 509 SELVVFITPRVVQ 521 >gi|184159708|ref|YP_001848047.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii ACICU] gi|239501963|ref|ZP_04661273.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii AB900] gi|183211302|gb|ACC58700.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii ACICU] gi|322509621|gb|ADX05075.1| HofQ [Acinetobacter baumannii 1656-2] gi|323519639|gb|ADX94020.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii TCDC-AB0715] Length = 721 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 39/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 +K+++LL++ QV ++ I K++G + I + + Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 501 Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 D G + F + + D F + L AL+ Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 560 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325 ++ P + Q+A +G Q Y++ ++S ++ + D + L+ TP++ Sbjct: 561 YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 620 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G+I +++ G++ +T V + +G T++L G+ + + + Sbjct: 621 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKV 679 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 680 PFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720 >gi|330446773|ref|ZP_08310424.1| pilus (MSHA type) biogenesis protein MshL [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490964|dbj|GAA04921.1| pilus (MSHA type) biogenesis protein MshL [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 539 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 31/309 (10%) Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 +++E V ++ G R++ S +A +S R K+ + + + Q Sbjct: 213 VQLEKVVSGMIGSGDGRSVMVSPQAGLISVRAFPNELRE------VKEFLGMSQKRLKRQ 266 Query: 196 VTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 V L+ I EV D Q G S G + G + GG +S+ Sbjct: 267 VVLEAKIMEVTLDDSYQQGINWSYLTKSGNGITMGTAAIVDGLPGGNAISDLLGGQTNIT 326 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----- 305 + +F V+ L + L+ P +TA + Q A GG + T SS+ + Sbjct: 327 ISDGNFNAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNT 386 Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---------- 350 S+T G+ L TP + G + L + V + ++ + Sbjct: 387 VSPDVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVQNEEKKIEVGTAKPMVLPLAK 446 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++D+ + +G +V+ GL+K I +PLL IP +G LFR +++TE+ Sbjct: 447 STIRESDSIIHARTGDVVVIGGLMKSTINDQVSKVPLLGDIPGVGNLFRQINKVKKKTEL 506 Query: 411 FIAATPFLV 419 I P +V Sbjct: 507 VILLKPTVV 515 >gi|117620233|ref|YP_854918.1| msha biogenesis protein mshl [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561640|gb|ABK38588.1| msha biogenesis protein mshl [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 557 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 114/287 (39%), Gaps = 36/287 (12%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----------ITGSSSGPSK 228 + ++ +N + QV L+ I EV + + G S ITG S Sbjct: 263 AVREFLNQSESHLKRQVVLEARILEVALNEGYEQGVDWSGLSASWDGNKGITGGGSLTPS 322 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + A F + GG K + +F ++ L+ + TL+ P +TA + Q A Sbjct: 323 TIANTPNQIFSALGGGAGFK--ISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIK 380 Query: 289 SGGQHLYKT------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 G + T T +T G+ L TP + G++ L I V Sbjct: 381 VGTDEYFVTNASTTTTTSGTSAPIVTPNVELTPFFSGIALDVTPQIDEEGKVLLHIHPSV 440 Query: 337 SEPVIGVNAGDM----PSY------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + D+ P +R++DT V+ +G IV+ GL+K D Q++ +P Sbjct: 441 IDTEEQKKTIDVGTADPLILPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVP 500 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDD 432 LL IP +G F N R + ++ E+ I P +V K +L R + Sbjct: 501 LLGDIPWVGEAFTNRRESTKKVELVILLKPTVVEKDTWQNELQRSSE 547 >gi|56708227|ref|YP_170123.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670698|ref|YP_667255.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis FSC198] gi|224457344|ref|ZP_03665817.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370714|ref|ZP_04986719.1| type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis FSC033] gi|254875049|ref|ZP_05247759.1| type IV pilus multimeric outer membrane protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604719|emb|CAG45789.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321031|emb|CAL09172.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis FSC198] gi|151568957|gb|EDN34611.1| type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis FSC033] gi|254841048|gb|EET19484.1| type IV pilus multimeric outer membrane protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159452|gb|ADA78843.1| Type IV pilin multimeric outer membrane protein [Francisella tularensis subsp. tularensis NE061598] Length = 594 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 104/261 (39%), Gaps = 25/261 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236 K+V+N ++I DQV ++ I EV R ++GF + + S + Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390 Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 FV + + E + ALE + +A P L + Q Sbjct: 391 GPTPGPTPTPVDTFVGTTAKLAYT-IAGGVRLEMEVRALESESLAEEVASPHLVVANNQV 449 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340 A G Y ++S A +V + + L TP + G I + I + P Sbjct: 450 AFIKDGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPG 508 Query: 341 IGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 GD+P + R+ T V G T+V+ G+ + ++ + IP L IP LG LF Sbjct: 509 KTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFS 568 Query: 400 NSRFNREETEIFIAATPFLVK 420 ++ +++E+ I TP +++ Sbjct: 569 YTKITDQDSELLIFITPKIIE 589 >gi|307731211|ref|YP_003908435.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1003] gi|307585746|gb|ADN59144.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1003] Length = 613 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 96/242 (39%), Gaps = 15/242 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGG-----------KF 238 QV ++ I E + +G + S+ G+S+ G ++ + G F Sbjct: 373 RPTRQVLIEARIVEGEHGFSRNLGVRLSMAGTSADGSTRGLSGGKDGLVYDLSARPIAGF 432 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ L ALE + ++ P + A G + Y+ Sbjct: 433 DAATAGLTLFAAGATRLLNIELSALEAEGRGQVVSSPRVVTADRMKAVVEQGTELPYQ-A 491 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P ++ GR+ L + +AG P+ + T Sbjct: 492 KVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGEQTDAG--PAINTKHVQT 549 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ GGT+ + G+ D + +P+L KIP+LGALFR+ + +E+ + TP + Sbjct: 550 RVEVEDGGTVSIGGIYATDGRDDVTRVPVLGKIPVLGALFRHRAHRDQRSELAVFITPRV 609 Query: 419 VK 420 V+ Sbjct: 610 VQ 611 >gi|308271769|emb|CBX28377.1| hypothetical protein N47_G37010 [uncultured Desulfobacterium sp.] Length = 526 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 109/276 (39%), Gaps = 41/276 (14%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------------------- 220 ++ ++ Q+ +K I E +D + +G Q Sbjct: 238 IIEEIDRPTP-QILIKANIVETTQDTARNLGIQWGGMYNPRLGNHDLWVSPGGSTNSTTP 296 Query: 221 ------------GSSSGPSKSFAADFGGKF--VSEGGDFSVKGVLDRFSFETVLHALERA 266 GS+S S+ F +F + G + G + E L AL+ Sbjct: 297 TNPISGNYTPSYGSTSLSSQGFGINFPASMSDAASGTLGLMFGTIGGNILEMQLSALQNN 356 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVL 323 + L+ P++T + Q+A +G + Y T + T + SV D + L P V+ Sbjct: 357 GKLNILSSPSITTLDNQTAYTENGERIPYVTEETGTTGSITKSVKFEDVVLRLEIKPHVI 416 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + + + + +E N P ++ TT+ + +G TIV++GL K Q + Sbjct: 417 DSKNLKMEVLVKKNEVDNSRNVLGNPYIIKKETKTTLIVKNGETIVISGLTKQKKQDSEN 476 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+L +P+ G +F+ + ++ E+ I TP ++ Sbjct: 477 SVPVLRDMPLFGRMFKGTGKSKSMEEVLIFITPTIL 512 >gi|260556918|ref|ZP_05829135.1| general secretion pathway protein D [Acinetobacter baumannii ATCC 19606] gi|260409524|gb|EEX02825.1| general secretion pathway protein D [Acinetobacter baumannii ATCC 19606] Length = 721 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 39/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 +K+++LL++ QV ++ I K++G + I + + Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 501 Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 D G + F + + D F + L AL+ Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 560 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325 ++ P + Q+A +G Q Y++ ++S ++ + D + L+ TP++ Sbjct: 561 YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 620 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G+I +++ G++ +T V + +G T++L G+ + + + Sbjct: 621 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKV 679 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 680 PFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720 >gi|254469140|ref|ZP_05082545.1| general (type II) secretion pathway (GSP) D protein, putative [Pseudovibrio sp. JE062] gi|211960975|gb|EEA96170.1| general (type II) secretion pathway (GSP) D protein, putative [Pseudovibrio sp. JE062] Length = 749 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 16/250 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVS 240 + V+ L++ QV ++ TIAEV + G Q + G+ +G + A + Sbjct: 486 RDVVQALDLPLS-QVVIEATIAEVNINDNLSYGVQWYLAKGNFAGGIGAVADGASRPTKA 544 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KT 297 GG S L+ + VL AL+ T ++ ++ P LT + G+ A G Q + Sbjct: 545 AGGALS----LNTVGVDVVLKALQNITKVKVISSPYLTVLDGRKARLVIGDQVPFASRSQ 600 Query: 298 VSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSY 351 SS+ G +VT D G+VL P + S + L+IQ EVS V P+ Sbjct: 601 SSSNDGNVTVTNEVDVKDTGIVLQVEPNIRSNNSVLLQIQQEVSNVVQNKTEEGSLTPTI 660 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEI 410 R ++ + + SG TI+L GL+++ + + G+P+L KIP+ G LF+ N+ + TE+ Sbjct: 661 ATRTINSDIVVESGRTILLGGLIQERKENGESGVPILRKIPVFGELFKENTTNDTRRTEL 720 Query: 411 FIAATPFLVK 420 + TP +V+ Sbjct: 721 LVMITPRVVR 730 >gi|169794485|ref|YP_001712278.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii AYE] gi|213158943|ref|YP_002320941.1| fimbrial assembly protein PilQ [Acinetobacter baumannii AB0057] gi|215482074|ref|YP_002324256.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB307-0294] gi|301345422|ref|ZP_07226163.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB056] gi|301510068|ref|ZP_07235305.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB058] gi|301595996|ref|ZP_07241004.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB059] gi|169147412|emb|CAM85273.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii AYE] gi|213058103|gb|ACJ43005.1| fimbrial assembly protein PilQ [Acinetobacter baumannii AB0057] gi|213988167|gb|ACJ58466.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii AB307-0294] Length = 721 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 39/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 +K+++LL++ QV ++ I K++G + I + + Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 501 Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 D G + F + + D F + L AL+ Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 560 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325 ++ P + Q+A +G Q Y++ ++S ++ + D + L+ TP++ Sbjct: 561 YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 620 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G+I +++ G++ +T V + +G T++L G+ + + + Sbjct: 621 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKV 679 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 680 PFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 720 >gi|325123720|gb|ADY83243.1| type IV pilus assembly protein PilQ [Acinetobacter calcoaceticus PHEA-2] Length = 721 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 104/281 (37%), Gaps = 39/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 +K+++LL++ QV ++ I K++G + I + + Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 501 Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 D G + F + + D F + L AL+ Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSD-FMLDLELSALQADG 560 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSP 325 ++ P + Q A +G Q Y+T ++S S + D + L TP++ Sbjct: 561 YGEVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPD 620 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G+I +++ G++ T V + +G T++L G+ + + + Sbjct: 621 GKIQMKLDISKDSVSGAAPNGEL-ILNKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKV 679 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P +P +G LFR + + ++ E+ I TP +V +R+ Sbjct: 680 PFFGDLPGIGRLFRKDQKSDDKQELLIFVTPRIVNDTLVRN 720 >gi|313669028|ref|YP_004049312.1| pilus secretin [Neisseria lactamica ST-640] gi|313006490|emb|CBN87953.1| pilus secretin [Neisseria lactamica 020-06] Length = 726 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 107/262 (40%), Gaps = 24/262 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFA 231 +K+++ L++ QV ++ I E + +G + TG G + F Sbjct: 458 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFE 516 Query: 232 ADFGGK----------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 GGK + S+ + + L A E + +TLA P + + Sbjct: 517 GGEGGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQN 576 Query: 282 GQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + A SG + ++ + S + +T+ T + L TP + G+I + ++ P Sbjct: 577 RKEAKIESGTEIPFQDTSSSGGSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTP 636 Query: 340 VI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 V V + + +T + +GGT+++ G+ +++ IPLL IP++G LF Sbjct: 637 VDCTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKIPLLGDIPVIGNLF 696 Query: 399 RNSRFNREETEIFIAATPFLVK 420 + + E+ I TP ++ Sbjct: 697 KTRGKSTNRRELLIFITPRIMD 718 >gi|152990751|ref|YP_001356473.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2] gi|151422612|dbj|BAF70116.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2] Length = 507 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 69/296 (23%), Positives = 121/296 (40%), Gaps = 36/296 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----ITGSSSGPSKSFAADFGGK 237 +K + + ++V + V+I V + G S + G +F K Sbjct: 211 EKYIATIQNRLHNEVMIDVSILAVILNDQYTNGIDWSRFSLLVNGDYGADNTFTPGTNTK 270 Query: 238 FVS--------EGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQS 284 +S +F+V+ + + + +++ LE+ + TL+ P L ++ Q Sbjct: 271 LLSYTREGSGTSTSNFNVQRTIGSYFDASVNLAGIINFLEKNGQVITLSNPKLMTLNNQP 330 Query: 285 ASFTSGGQHLYKTVSS-------STGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTE 335 A + G Y +S G S T G++L+ TP + G I LRI Sbjct: 331 AIISIGDTINYNVPTSIVISQNGGLGTQSFTPSSVFIGILLNITPEITENGEIILRINPS 390 Query: 336 VSEP------VIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +SEP N + P +K + V++ G T++L GL+ + G+ Sbjct: 391 ISEPRDPKQLDQTTNENGIRQIAPDISEKKISSVVKVKDGSTLILGGLISNIKNFTINGV 450 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 P+L IP+LG LFR+ N + E+ P ++K + + S D YS+ D AK Sbjct: 451 PVLRDIPVLGGLFRSKARNNKRFELVFIIKPRIIKESSTDNYSLKDLGYSIVDHAK 506 >gi|83648789|ref|YP_437224.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC 2396] gi|83636832|gb|ABC32799.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC 2396] Length = 561 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 63/277 (22%), Positives = 117/277 (42%), Gaps = 29/277 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFA 231 ++ ++ ++ + + QV L+V I EV + + G S +S P+KS Sbjct: 265 TAVEEYLDKAQLVMQRQVILEVKILEVVLNKGFEQGVNWSYFDEFTSKVDASGDPTKSLT 324 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + V+ G V R + F T+L L ++ L+ P ++ I+ Q A G Sbjct: 325 LGQTSRSVTNPGLEGVFSAALRINDFTTLLQLLGEQGTVQVLSSPRISTINNQKAVIKVG 384 Query: 291 GQHLYKTVSSSTGATS------------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + T + AT+ +T G+ L TP + G + L + VS+ Sbjct: 385 DDEFFVTGIETNDATTTSGTSNLISEVEITPFFSGIALDVTPQIGENGDVTLHVHPTVSD 444 Query: 339 P-------VIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 +G N +P VR+ D+ ++ +G +V+ GL+++ ++ + +PLL Sbjct: 445 VEDQTKTISLGANDLVLPLAFSSVRETDSVIKARNGQVVVIGGLIRNLTEKTQAKVPLLG 504 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IP+LG FR R ++E+ I P + + R Sbjct: 505 DIPLLGHAFRQKRDTELKSELVILIRPIIADSESYRQ 541 >gi|115350365|ref|YP_772204.1| type IV pilus secretin PilQ [Burkholderia ambifaria AMMD] gi|115280353|gb|ABI85870.1| type IV pilus secretin PilQ [Burkholderia ambifaria AMMD] Length = 553 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 102/250 (40%), Gaps = 17/250 (6%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 +++ ++ QV ++ I E + + +G + ++ P+ AA Sbjct: 275 GLIDAIDRP-SRQVRIEARIVEGEQGFSRNLGARIALRAQGRAPTADGAASATDTRNALD 333 Query: 236 ------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G F + F++ + L ALE + ++ P + A Sbjct: 334 LAARPLGGFEAATAGFTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQ 393 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 G + Y+ G + V + L P + GR+ L + +V++ IG P Sbjct: 394 GSELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGP 450 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + T VE+ +GGT+ + G+ + + +PLL KIP+LGALFR+ + +E Sbjct: 451 AIHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSE 510 Query: 410 IFIAATPFLV 419 + + TP +V Sbjct: 511 LVVFITPTVV 520 >gi|307578579|gb|ADN62548.1| type IV pilus secretin PilQ [Xylella fastidiosa subsp. fastidiosa GB514] Length = 581 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 105/258 (40%), Gaps = 28/258 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------TGSSSGPSKSFAA 232 DQV ++ I + +G + + GSS+ ++ Sbjct: 315 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTAGSSTSATRGLNV 374 Query: 233 DFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 D GG + + + +F+ + L AL++ + ++ P + + + Sbjct: 375 DLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIKQ 434 Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIG 342 G + Y T++ +V + + L TPT+ + R+ L + E+ + + Sbjct: 435 GKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITI 494 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+ Sbjct: 495 ANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRG 554 Query: 403 FNREETEIFIAATPFLVK 420 ++++ E+ I TP +++ Sbjct: 555 KDKQKAELLIFVTPKVLR 572 >gi|332184221|gb|AEE26475.1| Type IV pilus biogenesis protein PilQ [Francisella cf. novicida 3523] Length = 596 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 104/263 (39%), Gaps = 27/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236 K+V+N ++I DQV ++ I EV R ++GF + + S + Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390 Query: 237 --------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 FV + + + + ALE + +A P L + Sbjct: 391 GPTPGPTPTPTPVDTFVGTTAKLAYT-IAGGVQLQMEIRALESESLAEEVASPHLVVANN 449 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 Q A G Y ++S A +V + + L TP + G I + I + Sbjct: 450 QVAFIKDGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGAS 508 Query: 339 PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 P GD+P + R+ T V G T+V+ G+ + ++ + IP L IP LG L Sbjct: 509 PGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYL 568 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F ++ +++E+ I TP +++ Sbjct: 569 FSYTKITDQDSELLIFITPKIIQ 591 >gi|206558684|ref|YP_002229444.1| putative type IV pilus secretin [Burkholderia cenocepacia J2315] gi|198034721|emb|CAR50588.1| putative type IV pilus secretin [Burkholderia cenocepacia J2315] Length = 541 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 17/252 (6%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADF----- 234 +++ ++ QV ++ I E + + +G + ++ PS SF AD Sbjct: 263 GLIDAIDRP-SRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPSAEGTSFTADARNALD 321 Query: 235 -----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G F + F++ + L ALE + ++ P + A Sbjct: 322 LAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQ 381 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 G + Y+ G + V + L P + GR+ L + +V++ +G P Sbjct: 382 GSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGP 438 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + T VE+ +GGT+ + G+ + + +PLL KIPILGALFR+ + E Sbjct: 439 AIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPILGALFRHRAQRDQRNE 498 Query: 410 IFIAATPFLVKP 421 + + TP +V P Sbjct: 499 LVVFITPTVVDP 510 >gi|90416876|ref|ZP_01224805.1| putative general secretion pathway protein [marine gamma proteobacterium HTCC2207] gi|90331223|gb|EAS46467.1| putative general secretion pathway protein [marine gamma proteobacterium HTCC2207] Length = 629 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 55/302 (18%), Positives = 120/302 (39%), Gaps = 30/302 (9%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAE 204 L G + ++ A ++ L+ + + +++ N++ QV ++ IAE Sbjct: 286 LAGEAVADKKAKAAYQIQIDELNNALVVAAPTAVIREIKNVVAQLDRSRPQVLIEAVIAE 345 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----------------FSVK 248 + D +++ Q + + + G + G +V Sbjct: 346 LSEDQAQELSSQLAYSSKNRGGYLTNFDGLLATLTGLGISGVEPTAAELGLLPKKVMAVA 405 Query: 249 GVLD---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------ 299 G D ++ AL+ + + L+ P++ + + A+ + G + ++T S Sbjct: 406 GDFDSETGKGIGLLIQALKTDGSTKILSTPSVVTLDNEEATLSVGEEVPFQTGSFTSSNN 465 Query: 300 -SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 S+ T++ + GV L P + + L I+ E S+ GV + + T Sbjct: 466 GSNNPFTTINREEVGVKLKVKPQISKGDSVRLEIEQESSKVKSGVPG--LQTTSKSTMQT 523 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + G ++L GL++D +PLL IP+LG LFR++ ++ + + P + Sbjct: 524 NVLIQDGELLILGGLIEDQTGGSATKVPLLGDIPLLGRLFRSTSKADSQSVLMMFIRPTI 583 Query: 419 VK 420 ++ Sbjct: 584 IR 585 >gi|120609694|ref|YP_969372.1| type IV pilus secretin PilQ [Acidovorax citrulli AAC00-1] gi|120588158|gb|ABM31598.1| type IV pilus secretin PilQ [Acidovorax citrulli AAC00-1] Length = 715 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 110/281 (39%), Gaps = 47/281 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF-------------------------- 215 +++++ L++A QV ++ I E R + +G Sbjct: 432 RQLLSTLDVA-VRQVMIEARIVEARDTFGRSLGVRLGGADLRANRGGDGGYSVGGNNRLA 490 Query: 216 -----QHSITGSSSGPSKSFAADFGGK-FVSEGGDFSVKGVLDRFS-----------FET 258 +++ S +G + + +D G FV+ S F+ Sbjct: 491 IGTSYNNAVASSGAGGTVATGSDAAGSTFVNLPAALSSGASFGNFALTLFNSAANRFLTL 550 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 L A+E + ++ P L A G ++ Y +V++ GAT++ + L Sbjct: 551 ELSAMEADGQGKVVSSPRLITADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEV 609 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 TP + G I L + +V++ G + T V + +GGT+V+ G+ + + Sbjct: 610 TPQITPEGNIILDL--DVNKDSKGETTTQGVAIDTNHVKTQVLVENGGTVVIGGIFRLEE 667 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + IPLL +P++G LF+N + E+ + TP ++ Sbjct: 668 TNQENKIPLLGDVPVVGNLFKNRTRESTKREMLVFITPKVI 708 >gi|323496092|ref|ZP_08101152.1| MSHA biogenesis protein MshL [Vibrio sinaloensis DSM 21326] gi|323318836|gb|EGA71787.1| MSHA biogenesis protein MshL [Vibrio sinaloensis DSM 21326] Length = 544 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 123/331 (37%), Gaps = 41/331 (12%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 +++ ++ G +++ + +A ++ R ++ + + + QV Sbjct: 210 QLQAAVAQLIGSGSGQSVVVTPQASVITVRAYPDEVRE------VREFLGVSQQRMQRQV 263 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------------GGKFVSE 241 L+ I EV Q G S SS+G + S G + Sbjct: 264 ILEAKILEVTLSDGYQQGINWSKAFSSNGTNYSIGQGSIVKDGNGDILPAVLPGLDAIGT 323 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 V+ SF+ VL + + L+ P +TA + Q A G Y T SS Sbjct: 324 LLGGQTNLVISSGSFDAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSS 383 Query: 302 ----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-------EVSEPVIGVN 344 + +T G+ L TP + G + L + +V E G Sbjct: 384 VVGSGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVDEQVKEIGFGDT 443 Query: 345 AGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +P R +R++D+ + G +V+ GL+K + +P L +P LG LFRN+ Sbjct: 444 RITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTIDQVSKVPFLGDVPALGHLFRNTT 503 Query: 403 FNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 ++TE+ I P +V ++L R D Sbjct: 504 KLTQKTELVILLKPTVVGVNTWQKELERSRD 534 >gi|224372077|ref|YP_002606449.1| putative GspD [Nautilia profundicola AmH] gi|223589087|gb|ACM92823.1| putative GspD [Nautilia profundicola AmH] Length = 580 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 124/270 (45%), Gaps = 8/270 (2%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGKFV 239 K ++ L+I + QV +K I E+ QIG + + S S + +A+ GG + Sbjct: 303 KTIIKALDIP-KMQVYVKARILEISNLKASQIGNKLGLYAGSGTGSGLYTLSANMGGPAI 361 Query: 240 S---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + S+ + + + LE A + L+EP++ I+ ++ G K Sbjct: 362 AFDVTSLGLSIPTIRQGLALGATIDLLETFGAAKKLSEPSILCINNTPSTIYVGKTISVK 421 Query: 297 TVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 T +++ +TSV+ D G+ L P + S ++ L ++ V + + G +P+ R Sbjct: 422 TGQTTSTSTSVSYSRQDIGLTLEIKPRIDSDNKVSLNVKAVVEDILPGSPDLTLPTTSKR 481 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 TT + +G +I++ GL++++ + +P IPI+GALFR+ N ++T + I Sbjct: 482 DIKTTTIVSNGQSIIIGGLVRNNKDITIKKVPFFGDIPIIGALFRHKEVNEDKTTLVIVL 541 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 TP++VK D R E + K Sbjct: 542 TPYIVKQSTDLDKLRLTLGKLNELERKFAL 571 >gi|114561293|ref|YP_748806.1| general secretion pathway protein D [Shewanella frigidimarina NCIMB 400] gi|114332586|gb|ABI69968.1| general secretion pathway protein D [Shewanella frigidimarina NCIMB 400] Length = 710 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 63/284 (22%), Positives = 111/284 (39%), Gaps = 47/284 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------------- 219 + V+N L+I QV ++ I E+ G Q Sbjct: 339 ESVINQLDIR-RAQVLVEAIIVEIAEGDNVGFGVQWGSEAGGLTQFNNIGPTIGEVGAGV 397 Query: 220 --TGSSSGPSKSFAADFGGKFVSE---------------GGDFSVKGVLDRFSFETVLHA 262 + G + + GG + G + + +F ++ A Sbjct: 398 WSARETDGTTVTVGNSDGGSTTTTNPTSDGDYTLIAQALGKVNGMAWGVTTGNFAALIQA 457 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLH 317 + T LA P++T + Q ASF G + T S+S+ +V + GV L Sbjct: 458 VSSDTNSNVLATPSITTLDNQEASFIVGDEVPIITGSTSSSNNDNPFQTVERKEVGVKLK 517 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + + L I+ EVS + N G S+ R+ TTV SG +VL GL+ ++ Sbjct: 518 VVPQINEGSSVKLTIEQEVSG--VNGNTGVDISFSTRRLTTTVMADSGQIVVLGGLINEE 575 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +Q+ + +P+L IP +G LF++S + + + I P +++ Sbjct: 576 VQESIQKVPILGDIPFIGHLFKSSSSKKTKKNLMIFIKPTIIRD 619 >gi|323527558|ref|YP_004229711.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1001] gi|323384560|gb|ADX56651.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1001] Length = 576 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 15/242 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGG-----------KF 238 QV ++ I E + +G + S+ G+++ G ++ + G F Sbjct: 336 RPTRQVLIEARIVEGEHGFSRNLGVRLSMAGTAADGTTRGLSGGKDGLVYDLSARPIAGF 395 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ L ALE ++ P + A G + Y+ Sbjct: 396 DAATAGLTLFAAGATRLLNVELSALEAEGRGEVVSSPRVVTADRMKAVVEQGTELPYQ-A 454 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P ++ GR+ L + +AG P+ + T Sbjct: 455 KVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDLDVAKDSVGEQTDAG--PAINTKHVQT 512 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ GGT+ + G+ D + +P+L KIP+LGALFR+ + +E+ + TP + Sbjct: 513 RVEVEDGGTVSIGGIYATDGRDDVTRVPVLGKIPVLGALFRHRAHRDQRSELAVFITPRV 572 Query: 419 VK 420 V+ Sbjct: 573 VQ 574 >gi|226226499|ref|YP_002760605.1| putative general secretion pathway protein D precursor [Gemmatimonas aurantiaca T-27] gi|226089690|dbj|BAH38135.1| putative general secretion pathway protein D precursor [Gemmatimonas aurantiaca T-27] Length = 621 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 109/265 (41%), Gaps = 8/265 (3%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + L+I QV +VTIAE+ + G + F S Sbjct: 343 RETIEALDIR-PAQVLFEVTIAEIALGRGFEFGIDWAAVNRGGDVQAQFGNPEIPDTGST 401 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 V LD +L + + ++ LA P + A + + AS G + + + + Sbjct: 402 SALLRVVR-LDGTGVRALLRTIASKSEVQVLATPEIMAANNREASILVGSKVPFISSTRL 460 Query: 302 TGATS----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRK 355 S V D G L PT+ G I +++ EVS A + P R+ Sbjct: 461 GNDISIDRAVQYQDVGTKLAIIPTINDEGYISVQLLQEVSSLTPQTVAAALSAPVISTRE 520 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A T L G T V+AGL+ + +G+P+L IP LGALF+ R+ TE+ I T Sbjct: 521 ASTRAVLRDGQTAVIAGLIGETRTTQDQGLPILKDIPWLGALFKRQSSTRQRTELAIFVT 580 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDA 440 P++V+ A D R +ED + Sbjct: 581 PYVVRSDADADGIRERIRKRMEDRS 605 >gi|32477970|ref|NP_870964.1| general secretion pathway protein D (outD) [Rhodopirellula baltica SH 1] gi|32448527|emb|CAD78042.1| general secretion pathway protein D (outD) [Rhodopirellula baltica SH 1] Length = 822 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 113/276 (40%), Gaps = 19/276 (6%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 E L + R Q +S + L++ QV + I +V + L+++G Sbjct: 326 VYEAENRILIKGNRAQLELAS--QAFKQLDVP-RAQVRITALIYDVSLEELEELGVNWGR 382 Query: 220 TGSSSGPSKSFAADFGGKF----------VSEGGDFSVKGVLDRFSFETVLHALERATAI 269 +S AD G F ++ + D F +L AL+ + Sbjct: 383 GFRLDTTDESALADLAGNVEKAVTFGTLGSGGASSFGIRTLTDTFDTSVLLRALDSSDEA 442 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSP 325 + LA+P++TAI + AS Q S + G+ V D G++L TP + + Sbjct: 443 KLLADPSITAIDRREASIKIVQQIPIVAASPAEGSNVVFAQVEFKDAGIILKVTPRISND 502 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L++Q E S V + P R A+TTV + +G L GL + I + G+ Sbjct: 503 NTIELQVQPEYSVKVGEIENN--PVIDSRTAETTVRVANGHMFTLGGLRQKRIIEGTSGV 560 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 P L + +G LFR+ E+E+ + P ++ P Sbjct: 561 PYLRDLKYVGKLFRSHSTEVRESELIVFLKPEIISP 596 >gi|118497727|ref|YP_898777.1| Type IV pili secretin component [Francisella tularensis subsp. novicida U112] gi|194323699|ref|ZP_03057475.1| type IV pilus secretin PilQ family protein, putative [Francisella tularensis subsp. novicida FTE] gi|82453010|gb|ABB76143.1| PilQ [Francisella novicida] gi|118423633|gb|ABK90023.1| Type IV pili secretin component [Francisella novicida U112] gi|194322063|gb|EDX19545.1| type IV pilus secretin PilQ family protein, putative [Francisella tularensis subsp. novicida FTE] Length = 594 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 59/261 (22%), Positives = 103/261 (39%), Gaps = 25/261 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236 K+V+N ++I DQV ++ I EV R ++GF + + S + Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390 Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 FV + + + ALE + +A P L + Q Sbjct: 391 GPTPGPTPTPVDTFVGTTAKLMYT-IAGGVQLQMEIRALESESLAEEVASPHLVVANNQV 449 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340 A G Y ++S A +V + + L TP + G I + I + P Sbjct: 450 AFIKDGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPG 508 Query: 341 IGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 GD+P + R+ T V G T+V+ G+ + ++ + IP L IP LG LF Sbjct: 509 KTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFS 568 Query: 400 NSRFNREETEIFIAATPFLVK 420 ++ +++E+ I TP +++ Sbjct: 569 YTKITDQDSELLIFITPKIIE 589 >gi|332139655|ref|YP_004425393.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Alteromonas macleodii str. 'Deep ecotype'] gi|327549677|gb|AEA96395.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Alteromonas macleodii str. 'Deep ecotype'] Length = 582 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 114/313 (36%), Gaps = 44/313 (14%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + + ++ V + L + K +N + + QV L+ I EV + Q Sbjct: 250 SPTEGRQVVVSPQAGLVTIRALPSEIAVVKDFLNQSQESLQRQVVLEARIIEVTLNDGYQ 309 Query: 213 IGFQH-----------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV----------- 250 G + + S + +FAA+ + G Sbjct: 310 QGVRWDRIASGLTGSVNFGFSGGALASNFAANTAAGIDPAINAVNAIGNTISTDIGGVST 369 Query: 251 --LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + R F+ V++ L+ ++ L+ P +T + Q A G + T S++ S T Sbjct: 370 LRISRGDFDGVINMLQTQGDVQMLSNPRVTVTNNQKAVIKVGQDEYFVTDVSTSEDQSTT 429 Query: 309 THD-----------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348 + + G+ L TP + G + L + V+E + Sbjct: 430 STENENDIELTPFFSGIALDVTPQIDRSGSVILHVHPSVTETAEQTKVIQVGDQQILLPL 489 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 +R++DT + G +V+ GL++ + + PLL IP +G F+N + + Sbjct: 490 AQSNIRESDTVIRARDGEIVVIGGLMETVTSEQESKTPLLGDIPFIGNAFKNKAKTQSKR 549 Query: 409 EIFIAATPFLVKP 421 E+ I P +V+P Sbjct: 550 ELVILIRPSVVQP 562 >gi|312882785|ref|ZP_07742519.1| type IV pilus assembly protein PilQ [Vibrio caribbenthicus ATCC BAA-2122] gi|309369569|gb|EFP97087.1| type IV pilus assembly protein PilQ [Vibrio caribbenthicus ATCC BAA-2122] Length = 409 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---- 235 S ++V+ L+ + QV ++ I ++ L+ +G + I + PS + Sbjct: 162 SIRQVIARLDRPIK-QVQIEAYIVTIQEGNLEDLGIRWGIQTQPNQPSMISQVNEAMLDV 220 Query: 236 ----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F + + + L AL++ + ++ P L + + A G Sbjct: 221 DLSMVAPSPSNTAFRMARLSQNILLDMELSALQKESKAEVISNPKLLTTNKRPAYIEQGS 280 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--P 349 + Y +SS A S+ + L TP + S + L +Q P +N G Sbjct: 281 EIPYLEAASSG-AASIAFKKAVLSLKVTPKITSKNDLLLDLQVTQDRPGNPINTGSGQAV 339 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + ++ T V + G TIVL G+ + + + IPLL +P+LGALFR + +E Sbjct: 340 AIDTQRIGTQVLVKDGETIVLGGIFQHSLSNAVDKIPLLGDVPLLGALFRRNYLQENRSE 399 Query: 410 IFIAATPFLV 419 + I TP ++ Sbjct: 400 LLIFVTPKVL 409 >gi|93006778|ref|YP_581215.1| type II and III secretion system protein [Psychrobacter cryohalolentis K5] gi|92394456|gb|ABE75731.1| type II and III secretion system protein [Psychrobacter cryohalolentis K5] Length = 750 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 112/272 (41%), Gaps = 33/272 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +N L+ QV ++ I EV D Q+G Q ++ ++SG + G VS Sbjct: 393 EDAVNQLDSR-RSQVLIQAAIVEVSGDDATQLGVQWALGNANSGYGVVNFNNVGASAVSL 451 Query: 242 GGDFSVKGVLDRFS------------------------FETVLHALERATAIRTLAEPTL 277 G + + +L AL+ +T+ L+ P++ Sbjct: 452 AAAALSGGTGISAAAGSIAGALLGIGSSSKDSKGNAQFYGAILQALDSSTSANLLSMPSI 511 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGL 330 + + AS G + T S +TG+ ++ D G+ L+ P + + G + L Sbjct: 512 LTLDNEKASILVGQNVPFVTGSYTTGSDSSTNPFQTIDRQDIGINLNVIPHIGANGTVRL 571 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRK-ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + EVS V G + +TT+ TI L GL++D+ ++ +P L Sbjct: 572 EVSQEVSSVVPGSAGNASGLITNKSLINTTILADDQQTIALGGLMRDNSTTRQQKVPGLG 631 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P++G LFR+ N +++ + I P +++ Sbjct: 632 NVPLIGRLFRSDNDNSQKSNLIIFLQPTILRD 663 >gi|71900198|ref|ZP_00682337.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] gi|71730031|gb|EAO32123.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] Length = 603 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 104/259 (40%), Gaps = 29/259 (11%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI-------------------TGSSSGPSKSFA 231 DQV ++ I + +G + + SS+ ++ Sbjct: 336 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSHVTTADSSTSATRGLN 395 Query: 232 ADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 D GG + + + +F+ + L AL++ + ++ P + + + Sbjct: 396 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 455 Query: 289 SGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341 G + Y T++ +V + + L TPT+ + R+ L + E+ + + Sbjct: 456 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 515 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 N G +P+ R+ +T V + G T+V+ G+ + + +P L +P LG LF+ Sbjct: 516 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 575 Query: 402 RFNREETEIFIAATPFLVK 420 ++++ E+ I TP +++ Sbjct: 576 GKDKQKAELLIFVTPKVLR 594 >gi|257454588|ref|ZP_05619844.1| general secretion pathway protein D [Enhydrobacter aerosaccus SK60] gi|257447898|gb|EEV22885.1| general secretion pathway protein D [Enhydrobacter aerosaccus SK60] Length = 813 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 31/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +N L+ DQV ++ I E+ + +Q+G Q ++ ++SG + G V Sbjct: 397 ENAINELDTR-RDQVLIQAAIMEISGNDTQQLGVQWAMGNANSGVGVINFNNIGASAVGL 455 Query: 242 GGDF----------SVKGVL------------DRFSFETVLHALERATAIRTLAEPTLTA 279 + SV G L +R + +L A+ + L+ P++ Sbjct: 456 ASEILSKTPGTAAASVAGALLGIGTSKTDSNGNREFYGAILQAINKTNNANLLSMPSILT 515 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + + A+ G + T S +T + +V+ D G+ L+ P + G + L I Sbjct: 516 LDNEKANILVGQNVPFVTGSYTTASNSSTTPFQTVSRQDVGINLNVIPHIGDNGSVRLEI 575 Query: 333 QTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS V G N TT+ T+ L GL++D+ ++ +P L Sbjct: 576 SQEVSSIVDGTLNNVSGVVTNKNLIKTTILADDQQTVALGGLMRDNSTYGQQKVPGLGDA 635 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 PILG LFR+ N ++T + + P +++ Sbjct: 636 PILGNLFRSKSKNSDKTNLIVFLQPTILR 664 >gi|59712900|ref|YP_205676.1| pili ecretion protein PilQ [Vibrio fischeri ES114] gi|59481001|gb|AAW86788.1| pili ecretion protein PilQ [Vibrio fischeri ES114] Length = 582 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 73/337 (21%), Positives = 138/337 (40%), Gaps = 40/337 (11%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN- 178 + L ++ + +++ +V G + T+ S+ ++ + E S R+ N Sbjct: 247 ASELAALSSEILSIKYAKASDIAELLVGEGEI-TMLSSRGSITVDERTNSLLLRDLPENI 305 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGG 236 + K +++ L+I + QV ++ I V L ++G + IT ++ + S ++ Sbjct: 306 TVIKDIIDTLDIPIK-QVQIEARIVTVNEGNLDELGVRWGITNTNGSTTVGGSIESNLAA 364 Query: 237 KFVSEGGD--------------------------------FSVKGVLDRFSFETVLHALE 264 + +GG F V + + L AL+ Sbjct: 365 VGLYDGGGSDDKKSGNNSLPVDDFLNVNLGLANPAASSIAFQVAKLGSDLLLDLELSALQ 424 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + ++ P L + + A G + Y SSS GATSV+ + L TP + Sbjct: 425 AESKAEIISSPRLITTNKKPAYIEQGTEIPYLEASSS-GATSVSFKKAVLSLMVTPQITP 483 Query: 325 PGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 R+ L + P V+ G+ + ++ T V + +G T+VL G+ + + Sbjct: 484 DNRLVLDLTVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVDNGETVVLGGIYQHSLSNSV 543 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 E +P+L +P+LGALFR S N + E+ I TP +V Sbjct: 544 EKVPVLGDLPLLGALFRRSSENIGKKELLIFVTPKVV 580 >gi|293610712|ref|ZP_06693012.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827056|gb|EFF85421.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 721 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 104/281 (37%), Gaps = 39/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 +K+++LL++ QV ++ I K++G + I + + Sbjct: 443 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 501 Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 D G + F + + D F + L AL+ Sbjct: 502 LREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSD-FMLDLELSALQADG 560 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSP 325 ++ P + Q A +G Q Y+T ++S S + D + L TP++ Sbjct: 561 YGEVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPD 620 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G+I +++ G++ T V + +G T++L G+ + + + Sbjct: 621 GKIQMKLDISKDSVSGAAPNGEL-ILNKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKV 679 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P +P +G LFR + + ++ E+ I TP +V +R+ Sbjct: 680 PFFGDLPGIGRLFRKDQKSDDKQELLIFVTPRIVNDTLVRN 720 >gi|254374542|ref|ZP_04990023.1| type IV pilin multimeric outer membrane protein [Francisella novicida GA99-3548] gi|151572261|gb|EDN37915.1| type IV pilin multimeric outer membrane protein [Francisella novicida GA99-3548] Length = 594 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 59/260 (22%), Positives = 104/260 (40%), Gaps = 23/260 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+V+N ++I DQV ++ I EV R ++GF + + S + + Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390 Query: 242 GGDFSVK----------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 G + V + + ALE + +A P L + Q A Sbjct: 391 GPTPTPTPTPVDTFVGTTAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA 450 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVI 341 G Y ++S A +V + + L TP + G I + I + P Sbjct: 451 FIKDGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGK 509 Query: 342 GVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 GD+P + R+ T V G T+V+ G+ + ++ + IP L IP LG LF Sbjct: 510 TPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSY 569 Query: 401 SRFNREETEIFIAATPFLVK 420 ++ +++E+ I TP +++ Sbjct: 570 TKITDQDSELLIFITPKIIE 589 >gi|91791490|ref|YP_561141.1| type II and III secretion system protein [Shewanella denitrificans OS217] gi|91713492|gb|ABE53418.1| type II and III secretion system protein [Shewanella denitrificans OS217] Length = 705 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 62/288 (21%), Positives = 112/288 (38%), Gaps = 48/288 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV + G Q + + A G Sbjct: 337 ESVINQLDIR-RAQVLVEAIIVEVAENDDVGFGIQWASMAGGGTQFNNLGATIGEVGAGV 395 Query: 236 ----------------------GKFVSEGGDFSVKGV-----------LDRFSFETVLHA 262 GD+++ + F ++ A Sbjct: 396 WAAREKDVAQVTTIDANNKPVVSNNPKTEGDYTLLAQALGKVNGMAWGVASGDFGALIQA 455 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVL 316 + T LA P++T + Q ASF G + T S ++ +V + GV L Sbjct: 456 VSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNANPFQTVERKEVGVKL 515 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP + + L I+ EVS I G ++ R+ TTV SG +VL GL+ + Sbjct: 516 KVTPQINEGTAVKLTIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLINE 573 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 ++Q+ + +P L IP +G LF++S ++++ + + P +++ + Sbjct: 574 EVQESIQKVPFLGDIPFIGHLFKSSSSSKKKKNLMVFIKPTIIRDGVI 621 >gi|1019923|gb|AAA79322.1| S-protein secretion D [Aeromonas hydrophila] Length = 737 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 13/235 (5%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + V +AEV + + +G S + G + G + G + ++ Sbjct: 464 VMIDVLLAEVSLNDKEGLGVDWSNIHTDLGAKDLIMSTANG-IGNSGLNLTLNSAGQT-- 520 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVT 308 L+A + P L SG+ A G + T +S + +V Sbjct: 521 -RAKLNAFYENKQAVIRSSPKLMVRSGEEARIEVGNEIPVVTGTSQSTDNPDAPINKTVQ 579 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGG 366 GV+L PTV + G + L I E+SE + D P+ RK +T + L GG Sbjct: 580 YRKTGVILTIKPTVQASGVVDLTISQELSEQADTSTSTDALSPTIMNRKVNTALTLRDGG 639 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +++LAGL+ + G+PLL IP +G+LF++ ++ TE+ + P++++ Sbjct: 640 SVMLAGLISSTKGEGDTGVPLLGDIPWIGSLFKSKSNSQNRTELVVMIIPYVLRD 694 >gi|332873777|ref|ZP_08441719.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6014059] gi|332738000|gb|EGJ68885.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6014059] Length = 712 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 39/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 +K+++LL++ QV ++ I K++G + I + + Sbjct: 434 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 492 Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 D G + F + + D F + L AL+ Sbjct: 493 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 551 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325 ++ P + Q+A +G Q Y++ ++S ++ + D + L+ TP++ Sbjct: 552 YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 611 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G+I +++ G++ +T V + +G T++L G+ + + + Sbjct: 612 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKV 670 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 671 PFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 711 >gi|332750364|gb|EGJ80775.1| transport protein hofQ domain protein [Shigella flexneri 4343-70] Length = 170 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 2/166 (1%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + L ALE+ + +A P L A Q AS + Y+ S +GATSV + + Sbjct: 2 LDLELSALEQKQQLDIIASPRLLASHLQPASIKQESEIPYQVSSGESGATSVEFKEAVLG 61 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + TPTVL GRI L++ + P V+ G++ + ++ +T VE+ SG T+ L G+ Sbjct: 62 MEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGI 121 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + ++ +PLL IP G LFR+ E E+ + TP LV Sbjct: 122 FTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 167 >gi|285019110|ref|YP_003376821.1| type IV pilus assembly protein pilq [Xanthomonas albilineans GPE PC73] gi|283474328|emb|CBA16829.1| probable type iv pilus assembly protein pilq [Xanthomonas albilineans] Length = 639 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 54/272 (19%), Positives = 104/272 (38%), Gaps = 34/272 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-------- 233 ++++N+++ DQV ++ I + +G + + G S S + Sbjct: 363 RELINVIDRP-VDQVLIEGRIVIATDTFARDLGARFGVAGRRSYGSNTGVVSGNLADNSS 421 Query: 234 ------------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 G G + + FS + L AL+ ++ P Sbjct: 422 ILNNSLHNIPNGLNVNLPAGTFTTGNAGAIAYTLLGANFSLDMELSALQEEGRGEVISNP 481 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + + A G Y T++ TG +V + + L TPT+ R+ L Sbjct: 482 RIVTSNQREAVIRQGKDIAYVTITGGTGGAAATPNVQFKEVLLELKVTPTITDDNRVFLN 541 Query: 332 IQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + EV V N G +P R+ +T V + G T+V+ G+ + + +P L Sbjct: 542 MNVKKDEVDHYVTLQNYGTVPEINRREINTAVLVDDGQTVVIGGVYEFTNRNSLAKVPFL 601 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P LG LF+ ++ + E+ I TP +++ Sbjct: 602 GDVPFLGNLFKQRGRSKAKAELLIFVTPKVMR 633 >gi|212709415|ref|ZP_03317543.1| hypothetical protein PROVALCAL_00454 [Providencia alcalifaciens DSM 30120] gi|212687930|gb|EEB47458.1| hypothetical protein PROVALCAL_00454 [Providencia alcalifaciens DSM 30120] Length = 344 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 125/312 (40%), Gaps = 38/312 (12%) Query: 116 IERDIAHLEMTLRR-----FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170 + D + + ++ V+ +++++++ D+Q L ET+L+Q Sbjct: 61 VSIDANSTYQQITQPNMHLLSSNGKAHVDTITNSLIIT-------DTQERFALIETWLTQ 113 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 Q QV + I R L+ +G + + S+ Sbjct: 114 KDIPQ------------------QQVQITAHIISSSRTALQALGLEWGVHNDSATDGHHS 155 Query: 231 AADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + ++ S+ G ++ + L E L+ALE+ + +A P L A AS Sbjct: 156 RYN---RYSSQSGQMALNVLRLGEGLLEMKLNALEKENLLSIIASPRLVASHKNPASIQQ 212 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGD 347 G + Y T S + V D + + TPT+ + + ++ + P N Sbjct: 213 GSEIPYVTTSEK--KSHVQFKDAVLGMEVTPTISRNDNVEMVLKISHNSPDTALTTNPNQ 270 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + ++ T+V + + T++L G+ + ++ G+P LS+IP+LG LF N + ++ Sbjct: 271 HLAINKQEIATSVTIKNNNTLILGGIFQQKQEKTDSGVPFLSQIPLLGNLFINKTQHVDK 330 Query: 408 TEIFIAATPFLV 419 + + TP L+ Sbjct: 331 RVLVVFITPKLI 342 >gi|254487874|ref|ZP_05101079.1| general secretion pathway protein D [Roseobacter sp. GAI101] gi|214044743|gb|EEB85381.1| general secretion pathway protein D [Roseobacter sp. GAI101] Length = 644 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 73/292 (25%), Positives = 131/292 (44%), Gaps = 21/292 (7%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSF 230 Q + +++ L++ QV ++ I EV D+ +++G Q I ++ S SF Sbjct: 337 TQRQLAEVSQLIKALDVRRP-QVMIEAAIVEVSGDVAERLGVQLGIGENTETGSIAATSF 395 Query: 231 AADFG---------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G G+ + + L SF ++ AL +T+ L+ P++T + Sbjct: 396 GNGGGSLQNVLVALGQSNAAALSTGLSVGLASDSFGALIQALNTSTSANLLSTPSVTTMD 455 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 QSA+ G ++T +T +V D G+ + P + + G + L I+ EVS Sbjct: 456 NQSATIVVGQNVPFRTGRLTTDGGNVAEVIEREDVGITMVVKPRITAGGVVQLEIEQEVS 515 Query: 338 EPVIGVNAGDMPSYRVRK-ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 G R+ +TTV +GGT+VL GL+ DD Q + +PLL +P+LG Sbjct: 516 SLTNQAVTGAADLVTNRRVINTTVLAENGGTVVLGGLITDDRLQNNQKVPLLGDVPVLGN 575 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD-HYSVEDDAKAFFFNR 447 LF++ +R + +F+ P ++ + DL + + Y +A+A R Sbjct: 576 LFKSRNNSRSKRTLFVFLRPTIM--LTRADLEKAAETRYRRAQNAEATVQPR 625 >gi|71899610|ref|ZP_00681765.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] gi|71730652|gb|EAO32728.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Ann-1] Length = 775 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 136/344 (39%), Gaps = 47/344 (13%) Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 + +V LH T+ S AVE T L ++ + S + V+ L++ QV ++ Sbjct: 436 NGSVTLHVQGDTVGVS--AVEEINTLLVRATPQAW--RSIRDVIEKLDVM-PMQVHIEAQ 490 Query: 202 IAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +AEV G S +G S G S G K + + Sbjct: 491 VAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAGRSGWKSIAGK 550 Query: 254 F------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + +++AL++ T +R L P++ + A+ G + + S + Sbjct: 551 VTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGARIPINSTSIN 610 Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGV 343 TG +SV D GV+L P V G + L I EVS P + Sbjct: 611 TGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGSLPAACSSASSTLVN 670 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +A R+ T + SG TI+LAGL+ + + G+P LSK+PI+G LF Sbjct: 671 SAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQ 730 Query: 404 NREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFN 446 N EI + TP +V+ P R+L D YS + +A Sbjct: 731 NNNRREIIVLLTPEIVRNPQEARNL---TDEYSQKFNAMEPLPG 771 >gi|332851353|ref|ZP_08433405.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013150] gi|332868764|ref|ZP_08438387.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013113] gi|332730069|gb|EGJ61397.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013150] gi|332733193|gb|EGJ64390.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013113] Length = 712 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 39/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----------- 230 +K+++LL++ QV ++ I K++G + I + + Sbjct: 434 RKMIDLLDV-QVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWN 492 Query: 231 -----------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 D G + F + + D F + L AL+ Sbjct: 493 LREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSD-FMLDLELSALQADG 551 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325 ++ P + Q+A +G Q Y++ ++S ++ + D + L+ TP++ Sbjct: 552 YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPD 611 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G+I +++ G++ +T V + +G T++L G+ + + + Sbjct: 612 GKIQMKLDISKDSVAGAAPNGEL-ILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKV 670 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P IP++G LFR + ++ E+ I TP +V R+ Sbjct: 671 PFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN 711 >gi|84394142|ref|ZP_00992875.1| MSHA biogenesis protein MshL [Vibrio splendidus 12B01] gi|84375244|gb|EAP92158.1| MSHA biogenesis protein MshL [Vibrio splendidus 12B01] Length = 492 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 70/323 (21%), Positives = 121/323 (37%), Gaps = 33/323 (10%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 ++E ++ G +++ + +A ++ R ++ + + + QV Sbjct: 166 QLEAAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIRE------VREFLGISQKRLQRQV 219 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VL 251 L+ I EV Q G S S G S+ G + Sbjct: 220 ILEAKIMEVTLSDGYQQGISWSNLSKSIGSGGVVIDRPASTLPPLDAISSLLGGQTNVTI 279 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGA------ 304 SFE VL ++ + L+ P +TA + Q A G Y T +SSS G+ Sbjct: 280 SDGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTDLSSSVGSGDDANV 339 Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----------PVIGVNAGDMPS 350 +T G+ L TP + G + L + V E G+ + Sbjct: 340 APEVELTPFFSGISLDVTPQIDDKGSVFLHVHPAVIEVEEEVKELNLGSTTGIVQLPLAK 399 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R++D+ + G +V+ GL+K + + +P L IP LG LFRN+ ++TE+ Sbjct: 400 SSIRESDSVIRAKDGDVVVIGGLMKSNTSDVTSKVPFLGDIPALGHLFRNTNQLTQKTEL 459 Query: 411 FIAATPFLVK-PVAMRDLSRPDD 432 I P +V +L R D Sbjct: 460 VILLKPTIVGVNTWQSELERSRD 482 >gi|121607671|ref|YP_995478.1| general secretion pathway protein D [Verminephrobacter eiseniae EF01-2] gi|121552311|gb|ABM56460.1| general secretion pathway protein D [Verminephrobacter eiseniae EF01-2] Length = 720 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 129/282 (45%), Gaps = 16/282 (5%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 A EL+ + L S R +YA + + L++ QV ++ +I EV + + G Q + Sbjct: 417 ADELNNSVLVWSTRAEYAK--IESTLRRLDLP-PTQVLIEASIIEVTLNDDLRYGLQWAF 473 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD-------FSVKGVLDRFSFETVLHALERATAIRTL 272 S SG + A S GG FS + +L+ L T ++ + Sbjct: 474 NDSRSGIDRGQGALSSRDGTSTGGILGGALAGFSYALKSPAGAVRAMLNVLSAKTTVKVV 533 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSST-----GATSVTTHDYGVVLHFTPTVLSPGR 327 A P+L + +AS G Q + ++S +T++ D GV L TP+V + Sbjct: 534 ASPSLMVLDNHTASIAVGDQTPIQAGTTSNLEGTVTSTNIEYKDTGVNLVVTPSVNAGNI 593 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + ++I V++ + ++ R+ + V + SG +IV+ GL+++ K GIP+ Sbjct: 594 VTMQIDQSVTDVGAKDEVTNQRAFLQRQLSSKVSVRSGESIVMGGLIQESSSSTKSGIPV 653 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 L +P+ G LF + + TE+ + TP +V+ + +R +S Sbjct: 654 LHALPLFGNLFGTTVNDGRRTELLVIITPRVVRSDIDIRQVS 695 >gi|238787297|ref|ZP_04631096.1| General secretion pathway protein D [Yersinia frederiksenii ATCC 33641] gi|238724559|gb|EEQ16200.1| General secretion pathway protein D [Yersinia frederiksenii ATCC 33641] Length = 657 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 101/253 (39%), Gaps = 12/253 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGK 237 +V+ L+I QV ++ I E + +G Q + +S G + Sbjct: 348 DQVIEKLDIR-RAQVLVEAIIVETQNGEGLNLGVQWANKFHGGVNFLQNPESVKNKNGSE 406 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 + + + +++ + AL LA P++ + A F G + Sbjct: 407 NIVPKLITGLTAGFYKGNWDGLFTALATNLNNNILATPSIVTLDNMEAEFNVGQEVPILT 466 Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPS 350 +T ++ S++ GV+L P + + L I+ EVS + Sbjct: 467 STQTTTTDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDINTHNLGSV 526 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R + V + SG T+V+ GLL + + +PLL IP +GALFR S+ E++ + Sbjct: 527 FNKRIVNNAVLVKSGETVVVGGLLDKKVNKTINKVPLLGDIPFIGALFRQSKEKVEKSNL 586 Query: 411 FIAATPFLVKPVA 423 + P +++ + Sbjct: 587 ILFIKPTILRETS 599 >gi|71274709|ref|ZP_00650997.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Dixon] gi|170730050|ref|YP_001775483.1| general secretory pathway protein D [Xylella fastidiosa M12] gi|71164441|gb|EAO14155.1| type II and III secretion system protein:NolW-like [Xylella fastidiosa Dixon] gi|167964843|gb|ACA11853.1| general secretory pathway protein D precursor [Xylella fastidiosa M12] Length = 775 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 136/344 (39%), Gaps = 47/344 (13%) Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 + +V LH T+ S AVE T L ++ + S + V+ L++ QV ++ Sbjct: 436 NGSVTLHVQGDTVGVS--AVEEINTLLVRATPQAW--RSIRDVIEKLDVM-PMQVHIEAQ 490 Query: 202 IAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +AEV G S +G S G S G K + + Sbjct: 491 VAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAGRSGWKSIAGK 550 Query: 254 F------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + +++AL++ T +R L P++ + A+ G + + S + Sbjct: 551 VTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGARIPINSTSIN 610 Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGV 343 TG +SV D GV+L P V G + L I EVS P + Sbjct: 611 TGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGSLPAACSSASSTLVN 670 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +A R+ T + SG TI+LAGL+ + + G+P LSK+PI+G LF Sbjct: 671 SAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQ 730 Query: 404 NREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFN 446 N EI + TP +V+ P R+L D YS + +A Sbjct: 731 NNNRREIIVLLTPEIVRNPQEARNL---TDEYSQKFNAMEPLPG 771 >gi|26987782|ref|NP_743207.1| general secretion pathway protein D [Pseudomonas putida KT2440] gi|24982477|gb|AAN66671.1|AE016295_4 type II secretion pathway protein XcpQ [Pseudomonas putida KT2440] Length = 584 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 104/267 (38%), Gaps = 26/267 (9%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + ++ L+I QV ++ IAEV +++G Q G G Sbjct: 272 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 330 Query: 239 --------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G + F+F +++AL+ + L+ PTL Sbjct: 331 ASIAGAAASGDNEALGDLLSTTTGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLL 390 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + AS G + + T S + ++ + GV L P + + L I Sbjct: 391 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQ 450 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EVS +A D+ + R+ T V + G ++L GL+ D++ + +PLL IP L Sbjct: 451 EVSSIADTSSASDVIT-NKREIKTKVMVEDNGLVILGGLISDELSTSDQRVPLLGDIPYL 509 Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421 G LFR+ + + + P +++ Sbjct: 510 GRLFRSDATRNTKQNLMVFIRPRILRD 536 >gi|330831366|ref|YP_004394318.1| MSHA biogenesis protein MshL [Aeromonas veronii B565] gi|328806502|gb|AEB51701.1| MSHA biogenesis protein MshL [Aeromonas veronii B565] Length = 557 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 113/274 (41%), Gaps = 36/274 (13%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS-----------ITGSSSGPSKSFAADFGGKFVSE 241 + QV L+ I EV + + G S ITG S + + F + Sbjct: 276 KRQVVLEARIIEVALNEGYEQGVDWSGLSASWDGNKGITGGQSLANTQLPSTPNQIFSAL 335 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 GG K + +F ++ L+ + TL+ P +TA + Q A G Y T +S+ Sbjct: 336 GGGAGFK--ISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYYVTNAST 393 Query: 302 T-----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGV 343 T +T G+ L TP + G++ L I V +G Sbjct: 394 TITTTSTGTDKTPNVELTPFFSGIALDVTPQIDEEGKVLLHIHPSVIDTEEQNKVIDMGT 453 Query: 344 NAG----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + G + +R++DT V+ +G IV+ GL+K D Q++ +PLL IP +G F Sbjct: 454 SGGKLQLPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPWVGEAFT 513 Query: 400 NSRFNREETEIFIAATPFLV-KPVAMRDLSRPDD 432 N R + ++ E+ I P +V K +L R + Sbjct: 514 NRRESTKKVELVIMLKPTVVEKDTWQNELQRSSE 547 >gi|160901009|ref|YP_001566591.1| type IV pilus secretin PilQ [Delftia acidovorans SPH-1] gi|160366593|gb|ABX38206.1| type IV pilus secretin PilQ [Delftia acidovorans SPH-1] Length = 716 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 62/330 (18%), Positives = 118/330 (35%), Gaps = 43/330 (13%) Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 I V R + + A+ T + K ++ L++ Sbjct: 391 QITANNSGGGVGNSVSSRFLSERGSAISEPRTNQLFVTDTPAKLEAVKALLLTLDVP-VR 449 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITG--------------------SSSGPSKSFAADF 234 QV ++ I E R + +G + +G + A+ Sbjct: 450 QVLIEARIVEARDTFGRALGVRLGGGDLRAQRGGDGGYGIGGDNRLVFGTGYENAVASSG 509 Query: 235 GGKFVSEGGDFS------VKGVLDRFSF-------------ETVLHALERATAIRTLAEP 275 G V+ G+F + GV SF L A+E + ++ P Sbjct: 510 SGGTVNTSGNFVNLPAAKLTGVSGTGSFALSIFNSAANRFLALELSAMEADGQGKIISSP 569 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L A G ++ Y +V++ GAT++ + L TP + G I L + + Sbjct: 570 RLVTADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLEVTPQITPEGDIILDL--D 626 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V++ G + + T V + +GGT+V+ G+ + + + IP L +P+LG Sbjct: 627 VNKDSRGETTTQGVAIDTKHIKTQVLVQNGGTVVIGGIFEMEETNQESKIPFLGDVPVLG 686 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR 425 LF++ ++ E+ + TP ++ R Sbjct: 687 HLFKSRVRESQKREMLVFITPKMISDGLKR 716 >gi|319944755|ref|ZP_08019019.1| fimbrial assembly protein PilQ [Lautropia mirabilis ATCC 51599] gi|319742004|gb|EFV94427.1| fimbrial assembly protein PilQ [Lautropia mirabilis ATCC 51599] Length = 747 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 3/207 (1%) Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 T + SF A S+ G L ALE + ++ P + Sbjct: 543 ATALDNTNFFSFPAGGINGTNPASLAISLFGSSLSRFINLELSALEADQRGKVVSSPRVL 602 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 S + A G + Y++ +SS GATSV+ + L TP + G + L + +VS Sbjct: 603 TSSQRPAVIEQGTELPYQSATSS-GATSVSFRKANLRLEVTPQITPEGNVILDV--DVSR 659 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 +G + R T V + GGT+V+ G+ + + + +PLL IP+LG LF Sbjct: 660 DAVGQLTNAGYAIDTRHVKTQVLVEDGGTVVIGGIYEQFERNRTDKVPLLGDIPVLGYLF 719 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMR 425 R++ + TE+ + TP +V + Sbjct: 720 RSTTRTNDRTELLVFLTPRIVTDTLAQ 746 >gi|218708368|ref|YP_002415989.1| MSHA biogenesis protein MshL [Vibrio splendidus LGP32] gi|218321387|emb|CAV17337.1| MSHA biogenesis protein MshL [Vibrio splendidus LGP32] Length = 554 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 127/333 (38%), Gaps = 43/333 (12%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 ++E+ ++ G +++ + +A ++ R ++ + + + QV Sbjct: 218 QLEVAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIRE------VREFLGISQKRLQRQV 271 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------------GGKFVSE 241 L+ I EV Q G + SS+G + + G + Sbjct: 272 ILEAKIMEVTLSDGYQQGINWTKMFSSNGTNYTVGMGSIVKNAAGTIIPGTLPGMDPIGA 331 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSS 300 V+ SFE VL ++ + L+ P +TA + Q A G Y T +SS Sbjct: 332 ALGGQSNLVVSGGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTELSS 391 Query: 301 STGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----------PV 340 S G+ +T G+ L TP + G + L + V E Sbjct: 392 SVGSGDNANVAPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEVKELNLGST 451 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G+ + +R++D+ + G +V+ GL+K + + +P L IP LG LFRN Sbjct: 452 TGIVKLPLAKSSIRESDSVIRAQDGDVVVIGGLMKSNTSDMTSKVPFLGDIPALGHLFRN 511 Query: 401 SRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 + ++TE+ I P +V + +L R D Sbjct: 512 TSQLTQKTELVILLKPTIVGVNTWLTELERSRD 544 >gi|85711535|ref|ZP_01042593.1| Type II secretory pathway, component PulJ [Idiomarina baltica OS145] gi|85694687|gb|EAQ32627.1| Type II secretory pathway, component PulJ [Idiomarina baltica OS145] Length = 404 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 10/249 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S K+++ L+I QV ++ + ++ + ++Q G + + G + Sbjct: 154 SGIKQLITQLDIP-VKQVMIEARMVTMKSNAIEQFGVRWGDLTPRNDDQVIADVIDGMRV 212 Query: 239 ----VSEGGDF--SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 V G +V + + + L A+E+ +A P + + Q A G + Sbjct: 213 ELPAVPAAGRLKANVGKLSEGLLLDLELSAMEQDNEAEIIARPKIFTSNQQPAYIEQGTE 272 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-- 350 Y S+++GAT+V + L TP + S + L + + V+ P+ Sbjct: 273 FPYVE-SAASGATAVKFKKAVMGLRVTPQITSNDYVMLDLTITQNTRGDTVSTPTGPAVA 331 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 ++ T V + SG TIVL G+ + + G+P+LS +P +G LF+N R E+ E+ Sbjct: 332 IDTQEMATRVLVKSGETIVLGGIFQQYELKDDTGVPILSSLPFVGNLFKNQREQSEKREL 391 Query: 411 FIAATPFLV 419 I TP L+ Sbjct: 392 VIFVTPTLL 400 >gi|301058098|ref|ZP_07199150.1| general secretion pathway protein D [delta proteobacterium NaphS2] gi|300447730|gb|EFK11443.1| general secretion pathway protein D [delta proteobacterium NaphS2] Length = 749 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 59/260 (22%), Positives = 112/260 (43%), Gaps = 15/260 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ TIAEV D Q G ++++ ++ + +F A G GG GV + Sbjct: 494 PRQVLIQATIAEVTLDSSTQFGVEYALGHGAAVGNAAFMATLG-----SGGLQYSVGVTN 548 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TS 306 + + L AL + ++ P + A Q A + + +++ + T+ Sbjct: 549 K--WYAELTALATKGKLNVISSPHVLASDNQEAKIDVSREIPLASGTTNVSSGTTISETT 606 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPS 364 + D GV+L TP + G + + + EVS V + P++ R TT+ + Sbjct: 607 IEYRDTGVILSVTPHINERGLVTMDVDEEVSNYEGNQPVAGNEYPTFSKRVVKTTLTVGH 666 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G TI + GL++D + G+P L +P++ L + E+ E+ + TP +V + Sbjct: 667 GQTIAIGGLIRDRENEETRGLPCLVDVPVVKYLTGSWNKETEKIELIVLITPRVVANMDD 726 Query: 425 RDLSRPDDHYSVEDDAKAFF 444 + + V+ K F+ Sbjct: 727 VEAVTNEFKQKVQGVMKQFY 746 >gi|157959974|ref|YP_001500008.1| general secretion pathway protein D [Shewanella pealeana ATCC 700345] gi|157844974|gb|ABV85473.1| general secretion pathway protein D [Shewanella pealeana ATCC 700345] Length = 710 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 109/280 (38%), Gaps = 43/280 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVGEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGV 394 Query: 236 -------GKFVSEGGD---------------------FSVKGVLDRFSFETVLHALERAT 267 G V G + + F ++ A+ T Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFAALIQAVSSDT 454 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPT 321 LA P++T + Q ASF G + T S ++ +V + GV L P Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + L I+ EVS I G ++ R+ TTV SG +VL GL+K+++Q+ Sbjct: 515 INEGSSVKLTIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLIKEEVQES 572 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +P L IPI+G LF++S +++T + + P +++ Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKTNLMVFIKPTIIRD 612 >gi|313497412|gb|ADR58778.1| General secretion pathway protein D [Pseudomonas putida BIRD-1] Length = 584 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 104/267 (38%), Gaps = 26/267 (9%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + ++ L+I QV ++ IAEV +++G Q G G Sbjct: 272 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 330 Query: 239 --------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G + F+F +++AL+ + L+ PTL Sbjct: 331 ASIAGAAASGDNEALGDLLSTTTGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLL 390 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + AS G + + T S + ++ + GV L P + + L I Sbjct: 391 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINVDNSVRLDIVQ 450 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EVS +A D+ + R+ T V + G ++L GL+ D++ + +PLL IP L Sbjct: 451 EVSSIADTSSASDVIT-NKREIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYL 509 Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421 G LFR+ + + + P +++ Sbjct: 510 GRLFRSDATRNTKQNLMVFIRPRILRD 536 >gi|254254052|ref|ZP_04947369.1| Type II secretory pathway component HofQ [Burkholderia dolosa AUO158] gi|124898697|gb|EAY70540.1| Type II secretory pathway component HofQ [Burkholderia dolosa AUO158] Length = 735 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 126/312 (40%), Gaps = 30/312 (9%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 D + LR+ I ++ V+ + +VL T+Q ++R V Sbjct: 300 ADAKSVMAALRQIIKPKDVYVDERVNAIVLRDTPDTVQVAERVVMG-------------- 345 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 L+I + +VTL V + EV + +G Q+ S + + Sbjct: 346 ----------LDIP-QSEVTLDVQVLEVNMNDSLDLGVQYPGKLQFSALAGADGGALTLG 394 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + + + + L++ RTLA P + + + AS G + T Sbjct: 395 DLLRLNRDRIGVSSESGALSMAIDLLQKQGKTRTLANPKIRVRNMEKASIKIGERVPIVT 454 Query: 298 VSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYR 352 +++ G + V+ D G++L P + + +++ EVS + S Sbjct: 455 TTNANGVVTESVSYQDVGLMLKVEPRISLDDEVSVKVNMEVSSILSKETTKTGLVAYSLG 514 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A+T + +G T +LAGL+K + G+P +S +PI+G LF + + + +EI + Sbjct: 515 TRNAETLMTARNGQTQILAGLVKRNETDNASGLPGVSGLPIVGRLFGSHGRSHDRSEIVL 574 Query: 413 AATPFLVKPVAM 424 TP + + + + Sbjct: 575 LITPHIERNLDL 586 >gi|15838128|ref|NP_298816.1| general secretory pathway protein D precursor [Xylella fastidiosa 9a5c] gi|9106563|gb|AAF84336.1|AE003982_9 general secretory pathway protein D precursor [Xylella fastidiosa 9a5c] Length = 775 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 136/344 (39%), Gaps = 47/344 (13%) Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 + +V LH T+ S AVE T L ++ + S + V+ L++ QV ++ Sbjct: 436 NGSVTLHVQGDTVGVS--AVEEINTLLVRATPQAW--RSIRDVIEKLDVM-PMQVHIEAQ 490 Query: 202 IAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +AEV G S +G S G S G K + + Sbjct: 491 VAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAGRSGWKSIAGK 550 Query: 254 F------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + +++AL++ T +R L P++ + A+ G + + S + Sbjct: 551 VTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGARIPINSTSIN 610 Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGV 343 TG +SV D GV+L P V G + L I EVS P + Sbjct: 611 TGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGSLPAACSSASSTLVN 670 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +A R+ T + SG TI+LAGL+ + + G+P LSK+PI+G LF Sbjct: 671 SAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQ 730 Query: 404 NREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFN 446 N EI + TP +V+ P R+L D YS + +A Sbjct: 731 NNNRREIIVLLTPEIVRNPQEARNL---TDEYSQKFNAMEPLPG 771 >gi|114321906|ref|YP_743589.1| type IV pilus secretin PilQ [Alkalilimnicola ehrlichii MLHE-1] gi|114228300|gb|ABI58099.1| type IV pilus secretin PilQ [Alkalilimnicola ehrlichii MLHE-1] Length = 694 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 107/257 (41%), Gaps = 23/257 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231 + ++N L+I QV ++ I D + +G + T + S S+ A Sbjct: 433 RNLVNRLDIP-VQQVLIESRIVIADDDFSRDLGVRFGYTATGSLGSEGTAIGARPTPTPG 491 Query: 232 --------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 D + ++ + DR + L A+E ++ P + + + Sbjct: 492 IDGTDDLMVDLPAPAEAPRLGLAIGRIGDRL-LQLELSAMETEGRGEVISSPRVITANQR 550 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 A+ G + Y+ ++S GAT+V + + L TP + R+ + + EVS +G Sbjct: 551 EANIRQGVEIPYQEETAS-GATNVEFKEAVLGLTVTPQITPDDRVIMNL--EVSNDTVGE 607 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +PS + T V + +G T+VL G+ + + +P +P +G LFRN Sbjct: 608 VFAGVPSIDTQSVTTQVLVDNGETVVLGGVYERASGEQTRRVPFFGSLPGVGWLFRNRLT 667 Query: 404 NREETEIFIAATPFLVK 420 E++E+ + TP ++ Sbjct: 668 FDEQSELLVFVTPRILD 684 >gi|172059384|ref|YP_001807036.1| type IV pilus secretin PilQ [Burkholderia ambifaria MC40-6] gi|171991901|gb|ACB62820.1| type IV pilus secretin PilQ [Burkholderia ambifaria MC40-6] Length = 553 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 102/250 (40%), Gaps = 17/250 (6%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235 +++ ++ QV ++ I E + + +G + ++ P+ AA Sbjct: 275 GLIDAIDRP-SRQVRIEARIVEGEQGFSRNLGARIALRAQGRAPTADGAASATDTRNALD 333 Query: 236 ------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G F + F++ + L ALE + ++ P + A Sbjct: 334 LAARPLGGFEAATAGFTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQ 393 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 G + Y+ G + V + L P + GR+ L + +V++ IG P Sbjct: 394 GSELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGP 450 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + T VE+ +GGT+ + G+ + + +PLL KIP+LGALFR+ + +E Sbjct: 451 AIHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSE 510 Query: 410 IFIAATPFLV 419 + + TP +V Sbjct: 511 LVVFITPTVV 520 >gi|330502644|ref|YP_004379513.1| general secretion pathway protein D [Pseudomonas mendocina NK-01] gi|328916930|gb|AEB57761.1| general secretion pathway protein D [Pseudomonas mendocina NK-01] Length = 647 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 70/271 (25%), Positives = 117/271 (43%), Gaps = 28/271 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------TGS 222 ++ + ++ L++ QV ++ I EV DI +G Q ++ TG Sbjct: 330 ATLEDIVRQLDVP-RAQVMVEAAIVEVSGDITDALGVQWAVDARGRTGGLGGVNFGGTGL 388 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S G + D ++ GV F ++ AL + L+ P+L + Sbjct: 389 SVGTVLQILQSGEIPENTTLPDGAIIGVGSD-RFGALITALSANSKSNLLSTPSLLTLDN 447 Query: 283 QSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 Q A G ++T S +T A T++ D GV L TP + + L I+ E Sbjct: 448 QKAEILVGQNVPFQTGSYTTDASGAGNPFTTIERKDIGVTLKVTPHINEGATLRLEIEQE 507 Query: 336 VSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 +S P G+NA + R +T+ G IVL GL++DD+ Q +PLL IP Sbjct: 508 ISSIAPSTGLNAQAVDLVTNKRSIKSTILADDGQVIVLGGLIQDDVTQATSKVPLLGDIP 567 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +LG LFR++R + + + + P +V+ A Sbjct: 568 LLGGLFRSTRDSHIKRNLMVFLRPTVVRDGA 598 >gi|254522160|ref|ZP_05134215.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14] gi|219719751|gb|EED38276.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14] Length = 733 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 80/315 (25%), Positives = 129/315 (40%), Gaps = 36/315 (11%) Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 +R + +I +E+ D V + AVE + T L +S + S ++V+ Sbjct: 404 QRQSGNVSISLEVEGDRVGVS-----------AVEETNTLLVRSTPQAW--RSIREVIEK 450 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------PSKSFAADFGGKFVS 240 L++ QV ++ +AEV + G + G + A GG + S Sbjct: 451 LDVM-PLQVHIEAQVAEVALTGDLKYGVNWFFDNAVLGQKLTGALGGVTLPAAAGGSWSS 509 Query: 241 EGGDFS----VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G + + + V+ AL++ T +R L P++ + A+ G + Sbjct: 510 FAGAVTGADGLGWAFTGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGDKVPIN 569 Query: 297 TVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNA 345 T + +TG +SV D GV+L P V G + L I EVS Sbjct: 570 TTTVNTGVGTSSYSSVQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASDVPETCNPTER 629 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P +K T + SG TI+LAGL+ D GIP LSKIP++GALF Sbjct: 630 NCNPRISTKKLSTEAAVQSGDTIMLAGLITDSATDGSSGIPGLSKIPVVGALFGQKTRTS 689 Query: 406 EETEIFIAATPFLVK 420 +E+ + TP +V+ Sbjct: 690 RRSEVIVLLTPTIVR 704 >gi|119773594|ref|YP_926334.1| MSHA biogenesis protein MshL [Shewanella amazonensis SB2B] gi|119766094|gb|ABL98664.1| MSHA biogenesis protein MshL [Shewanella amazonensis SB2B] Length = 561 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 26/253 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGKFVSEGGDF 245 + QV L+ + EV Q G Q + G++ + A + G +S Sbjct: 285 QRQVILEAKVLEVTLSDGYQQGIQWNKIAGSALADGNTKINFATSAGNEFGNQISSALGG 344 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302 + F+ +++ L+ + L+ P +TA + Q A G + T SST Sbjct: 345 VTSLSIIGSDFDAMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGKDEYFVTDVSSTTVA 404 Query: 303 GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR--- 352 G T VT+ + G+ L TP + G + L + V + + + Sbjct: 405 GTTPVTSPEVELTPFFSGIALDVTPQIDGQGNVLLHVHPSVIDVKEQTKTIKISNSDLEL 464 Query: 353 ------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +R++DT ++ SG +V+ GL+K + +L +PLL IP LG F N + Sbjct: 465 PLAQSEIRESDTVIKAMSGDVVVIGGLMKSESLELVSKVPLLGDIPFLGEAFTNRSQSVR 524 Query: 407 ETEIFIAATPFLV 419 +TE+ I P +V Sbjct: 525 KTELVILLKPTVV 537 >gi|91776807|ref|YP_546563.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91710794|gb|ABE50722.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 723 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 3/200 (1%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G S ++ + FS+ + F L ALE + ++ P +T Sbjct: 521 GVSPDGAQDLNVNLPVANAFGNFAFSLFRLPAGFLLNLELSALETDQRGKIVSSPRVTTA 580 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 + Q A G Q ++ +SS GAT+V + + L TP + +I + ++ + + Sbjct: 581 NQQKAIIEQGTQIPFQQATSS-GATAVQFKNASLSLEVTPQITPDEKIIMDLEVKKDK-- 637 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +GV ++PS ++ T V + +G T VL G+ + + + +P +P LG +F+ Sbjct: 638 VGVVFNNVPSIDTQRVQTQVLVANGETAVLGGIYEQTERNDVDKVPFFGDLPFLGNVFKR 697 Query: 401 SRFNREETEIFIAATPFLVK 420 ++TE+ I TP ++ Sbjct: 698 RVKQSDKTELLIFITPKVMD 717 >gi|238921473|ref|YP_002934988.1| protein transport protein HofQ [Edwardsiella ictaluri 93-146] gi|238871042|gb|ACR70753.1| protein transport protein HofQ [Edwardsiella ictaluri 93-146] Length = 409 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 104/250 (41%), Gaps = 9/250 (3%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + L++ QV L I + ++ L+++G + S S + G Sbjct: 162 IAQLDVPLP-QVQLAAHIVSISQEGLRELGIRWSSGDQRSRGQDTLR---GAADAYFSAG 217 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F V + + + L ALER + +A P L A GQ+AS G + Y G Sbjct: 218 FQVARIGGQ-TLAVALAALERQDKVAIIASPHLMAAHGQTASIKQGSELPYAVSGGERGV 276 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVEL 362 +++ + + + TP +L+ RI L +Q + P V GD + ++ T V L Sbjct: 277 STMEFKEAVLGMSVTPRILADARIELALQISQNMPGRVVRQGDSEALAIDKQEITTQVTL 336 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G T +L G+ + Q G P L+ +P+LG L R+ E+ I TP L+ Sbjct: 337 ADGDTAMLGGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSAS 396 Query: 423 A--MRDLSRP 430 + R L P Sbjct: 397 SLLPRTLRPP 406 >gi|212633091|ref|YP_002309616.1| type II and III secretion system protein:NolW-like protein [Shewanella piezotolerans WP3] gi|212554575|gb|ACJ27029.1| Type II and III secretion system protein:NolW-like protein [Shewanella piezotolerans WP3] Length = 721 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 63/280 (22%), Positives = 107/280 (38%), Gaps = 43/280 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVSEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 394 Query: 236 -------GKFVSEGGD---------------------FSVKGVLDRFSFETVLHALERAT 267 G V G + + F ++ A+ T Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDT 454 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPT 321 LA P++T + Q ASF G + T S ++ +V + GV L P Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 V + L I+ EVS I G ++ R+ TTV SG +VL GL+ +++Q+ Sbjct: 515 VNEGNAVKLTIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLINEEVQES 572 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +P L IPI+G LF++S +++ + + P +++ Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKKNLMVFIKPTIIRD 612 >gi|313200821|ref|YP_004039479.1| type II and iii secretion system protein [Methylovorus sp. MP688] gi|312440137|gb|ADQ84243.1| type II and III secretion system protein [Methylovorus sp. MP688] Length = 671 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 114/262 (43%), Gaps = 17/262 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFG---GKFVSEGGDFSVK 248 +V L++ + E+ R L+++G + I+ +S P + A G V+ +++ Sbjct: 327 PEVMLEIEVLEISRSRLQELGIAYPNQISVNSRIPVTTSTAGSGIAVTSTVATDSPLTLE 386 Query: 249 GVLDRFSF------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G+L+ S ++ + + ++ P + + + A G + T +S+ Sbjct: 387 GLLNLNSSRFDVSPNPAVNFRKTTGDVNLISNPRIRVRNNEKAKILVGDKVPIITTTSTA 446 Query: 303 G---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKA 356 + +VT D G+ L P + + ++I EVS N + + R A Sbjct: 447 NVGISENVTYIDVGLKLDVEPRITLDDFVNIKIGLEVSSLGDRTTTRNGATVYTIGTRNA 506 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + L G +LAGL++D+ ++ +P L IPILG LF N + +TEI +A TP Sbjct: 507 STLLRLKDGEMQILAGLIQDEERKNASKLPALGDIPILGRLFSNQEDRKNKTEIVLAITP 566 Query: 417 FLVKPVAMRDLSRPDDHYSVED 438 ++ + D + E+ Sbjct: 567 RILGNIRRPDAEISEYWSGTEN 588 >gi|208779792|ref|ZP_03247136.1| type IV pilus secretin PilQ family protein, putative [Francisella novicida FTG] gi|208744247|gb|EDZ90547.1| type IV pilus secretin PilQ family protein, putative [Francisella novicida FTG] Length = 596 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 103/263 (39%), Gaps = 27/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236 K+V+N ++I DQV ++ I EV R ++GF + + S + Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390 Query: 237 --------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 FV V + + ALE + +A P L + Sbjct: 391 GPTPGPTPTPTPVDTFVGTTAKLMYT-VAGGVQLQMEIRALESESLAEEVASPHLVVANN 449 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 Q A G Y ++S A +V + + L TP + G I + I + Sbjct: 450 QVAFIKDGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGAS 508 Query: 339 PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 P GD+P + R+ T V G T+V+ G+ + ++ + IP L IP LG L Sbjct: 509 PGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYL 568 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F ++ +++E+ I TP +++ Sbjct: 569 FSYTKITDQDSELLIFITPKIIE 591 >gi|262191511|ref|ZP_06049695.1| type II secretory pathway component PulD [Vibrio cholerae CT 5369-93] gi|262032609|gb|EEY51163.1| type II secretory pathway component PulD [Vibrio cholerae CT 5369-93] Length = 559 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 64/275 (23%), Positives = 104/275 (37%), Gaps = 37/275 (13%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++V L I+ + QV L+ I EV Q G S SS+G S + + Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQD 320 Query: 239 VSEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S SV V+ SF+ V+ + + L+ P +TA + Q Sbjct: 321 SSGNPITSVLPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQ 380 Query: 284 SASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 A G Y T SS + + +T G+ L TP + G + L + Sbjct: 381 KAVIKVGTDEYYVTDISSVVGSGDNAQASPSIKITPFFSGISLDVTPQIDDQGNVLLHVH 440 Query: 334 TEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 V E + +R++D+ + G +V+ GL+K + Sbjct: 441 PAVIEVEQQTKKILYRSEEIELPLAKSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSK 500 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 501 VPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535 >gi|253998742|ref|YP_003050805.1| type II and III secretion system protein [Methylovorus sp. SIP3-4] gi|253985421|gb|ACT50278.1| type II and III secretion system protein [Methylovorus sp. SIP3-4] Length = 675 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 114/262 (43%), Gaps = 17/262 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFG---GKFVSEGGDFSVK 248 +V L++ + E+ R L+++G + I+ +S P + A G V+ +++ Sbjct: 331 PEVMLEIEVLEISRSRLQELGIAYPNQISVNSRIPVTTSTAGSGIAVTSTVATDSPLTLE 390 Query: 249 GVLDRFSF------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G+L+ S ++ + + ++ P + + + A G + T +S+ Sbjct: 391 GLLNLNSSRFDVSPNPAVNFRKTTGDVNLISNPRIRVRNNEKAKILVGDKVPIITTTSTA 450 Query: 303 G---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKA 356 + +VT D G+ L P + + ++I EVS N + + R A Sbjct: 451 NVGISENVTYIDVGLKLDVEPRITLDDFVNIKIGLEVSSLGDRTTTRNGATVYTIGTRNA 510 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + L G +LAGL++D+ ++ +P L IPILG LF N + +TEI +A TP Sbjct: 511 STLLRLKDGEMQILAGLIQDEERKNASKLPALGDIPILGRLFSNQEDRKNKTEIVLAITP 570 Query: 417 FLVKPVAMRDLSRPDDHYSVED 438 ++ + D + E+ Sbjct: 571 RILGNIRRPDAEISEYWSGTEN 592 >gi|163781745|ref|ZP_02176745.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1] gi|159882965|gb|EDP76469.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1] Length = 663 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 64/276 (23%), Positives = 114/276 (41%), Gaps = 25/276 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFA 231 + +++ L++ QV + TI E L IG + I G G S SFA Sbjct: 363 RSLISGLDVR-RKQVLIAATIVEASTKSLLDIGVRWQILGKRGGASFRGTSLSNIYSSFA 421 Query: 232 AD--FGGKFVSEGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + G F G +V F + LE + ++ P + + Q A Sbjct: 422 SGNFLMGVFSDVGRTVTVGDATFFFPDLVLLFSLLETGSGFNIISNPRVLTLDNQPAIIK 481 Query: 289 SGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPV- 340 G Y + + + G+ L+ TP + IGL ++ + Sbjct: 482 VGQVVPYAEGVKFDINGQPIITYDYKEVGLELNVTPRISGDNLRLTIGLNLEEIIDFVTN 541 Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 IG + +P R+ ++ V + +G T++L GL+ + EG+P L +IPILG LFR Sbjct: 542 EIGATSYTVPVTSNREVNSDVVIENGQTVILGGLVSTKTLKTMEGVPGLWRIPILGRLFR 601 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 +++T +FI TP++V + +L++ + + Sbjct: 602 RDVKQKDKTTLFIFITPYVV--SSPEELTKITEEHR 635 >gi|332678440|gb|AEE87569.1| Type IV pilus biogenesis protein PilQ [Francisella cf. novicida Fx1] Length = 596 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 103/263 (39%), Gaps = 27/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236 K+V+N ++I DQV ++ I EV R ++GF + + S + Sbjct: 332 KEVVNEIDIPN-DQVLIEARIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAP 390 Query: 237 --------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 FV V + + ALE + +A P L + Sbjct: 391 TPTPTPTPTPTPVDTFVGTTAKLMYT-VAGGVQLQMEIRALESESLAEEVASPHLVVANN 449 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338 Q A G Y ++S A +V + + L TP + G I + I + Sbjct: 450 QVAFIKDGEDVPYNQATASG-AAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGAS 508 Query: 339 PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 P GD+P + R+ T V G T+V+ G+ + ++ + IP L IP LG L Sbjct: 509 PGKTPQGGDLPPIIKKREITTKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYL 568 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F ++ +++E+ I TP +++ Sbjct: 569 FSYTKITDQDSELLIFITPKIIE 591 >gi|283781400|ref|YP_003372155.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283439853|gb|ADB18295.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 854 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 128/326 (39%), Gaps = 21/326 (6%) Query: 150 MVRTIQDSQR-AVELSETFLSQSGRNQYANSSSKKVMNLLNIA------GEDQVTLKVTI 202 V + + ++ +G + + V+ L+ QV ++ I Sbjct: 289 TVSSPSEIDIPGDQVKTGGNGFAGADVVIVRDYENVIKQLDQVFIEIDVKPRQVLIEAMI 348 Query: 203 AEVRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 VR +G + S S D +SEGG +K S Sbjct: 349 LSVRLSDNMTMGVNFEALRDKNNVRLVSGSPLTDLANIDLSEGG---LKLGFLDASLAVF 405 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLH 317 + ALE +A P L ++ Q A G Q Y TV+ ++ SV D G +L Sbjct: 406 IDALETVGDTNVIASPRLMCLNKQRAEIQIGEQLGYVSTTVTENSATQSVNFLDVGTLLR 465 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + + G I L + E+S + + G +P+ V + T V G T++L GL++ Sbjct: 466 LRPNIANDGLIRLEVHPELSTGTVSIEQGLTIPNKTVTQVTTNVMCADGCTVILGGLIRQ 525 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRP----D 431 D+ IP L +P++G FR +E TEI + TP +V +P+ + + Sbjct: 526 DLTNNTSQIPFLGSLPLVGPAFRQKTETQERTEIIVLLTPRIVSEPMLGEEGRKYGNSFT 585 Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEA 457 +H SV D + F R Y ++A Sbjct: 586 EHQSVYADKMSPFGKRSTGQYHLRKA 611 >gi|229512666|ref|ZP_04402135.1| MSHA biogenesis protein MshL [Vibrio cholerae TMA 21] gi|229350343|gb|EEO15294.1| MSHA biogenesis protein MshL [Vibrio cholerae TMA 21] Length = 559 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 64/275 (23%), Positives = 104/275 (37%), Gaps = 37/275 (13%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++V L I+ + QV L+ I EV Q G S SS+G S + + Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQD 320 Query: 239 VSEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S SV V+ SF+ V+ + + L+ P +TA + Q Sbjct: 321 SSGNPITSVLPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQ 380 Query: 284 SASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 A G Y T SS + + +T G+ L TP + G + L + Sbjct: 381 KAVIKVGTDEYYVTDISSVVGSGDNAQASPSIKITPFFSGISLDVTPQIDDQGNVLLHVH 440 Query: 334 TEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 V E + +R++D+ + G +V+ GL+K + Sbjct: 441 PAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSK 500 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 501 VPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535 >gi|127511323|ref|YP_001092520.1| pilus (MSHA type) biogenesis protein MshL [Shewanella loihica PV-4] gi|126636618|gb|ABO22261.1| pilus (MSHA type) biogenesis protein MshL [Shewanella loihica PV-4] Length = 563 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 64/251 (25%), Positives = 107/251 (42%), Gaps = 24/251 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV- 250 + QV L+ + EV Q G S+ G S S F + + ++ G+ Sbjct: 287 QRQVILEAKVLEVTLSDGYQQGIHWESVLGQSGNNSIEFGTSPAPDGLGDVITSAIGGIT 346 Query: 251 ---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GA 304 + F T+++ L+ + L+ P +TA + Q A G + T SST G Sbjct: 347 SLQIKGKDFSTMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGRDEYFVTDVSSTTVAGT 406 Query: 305 TSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMP- 349 T VTT + G+ L TP + G + L I V + + ++P Sbjct: 407 TPVTTPEVELTPFFSGIALDVTPQIDEEGSVLLHIHPSVIDIKEQNKSIKVSDSTLELPL 466 Query: 350 -SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 +R++DT ++ +G +V+ GL+K + +L +PLL IP LG F N + +T Sbjct: 467 AQSEIRESDTVIKANTGDVVVIGGLMKSENIELISKVPLLGDIPFLGEAFTNRSNSLRKT 526 Query: 409 EIFIAATPFLV 419 E+ I P +V Sbjct: 527 ELVILLKPTVV 537 >gi|261344685|ref|ZP_05972329.1| protein transport protein HofQ [Providencia rustigianii DSM 4541] gi|282567605|gb|EFB73140.1| protein transport protein HofQ [Providencia rustigianii DSM 4541] Length = 346 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 65/337 (19%), Positives = 138/337 (40%), Gaps = 26/337 (7%) Query: 99 VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 ++ G+ + +L + DI L + I E +S+ + V Q Sbjct: 18 MMSYAERGRDPF-IALLPDEDIPLLAEHTPKIIPVE----EPLSEKIFPLISVDAQLVYQ 72 Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIA-------------GEDQVTLKVTIAEV 205 + ++ LS+ G+ + +++ ++ + QV + I Sbjct: 73 QIIQTDLKLLSEKGQASFDTTTNSLIITESKPRMALITEWLKQKDIPQQQVQITAHIVSS 132 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LDRFSFETVLHALE 264 R L+ +G + + G + + ++ +E G ++ + L E L ALE Sbjct: 133 TRTALQALGLEWGMLGEMATNPHHSRYN---RYNTEPGKVALNILKLGDGLLEMKLSALE 189 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 +A + +A P L A + AS G + Y T ++ + V D + + TPT+ Sbjct: 190 KANLLSIIASPRLVASHQKPASIQQGTEIPYVT--NTDKKSHVQFKDAVLGMEVTPTISR 247 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 ++ + ++ + P + S ++ T+V + + T++L G+ + ++ + Sbjct: 248 DNKVEMVLKISHNSPDTAITTSQNHHLSINKQEIATSVTIKNNDTLILGGIFQQKQEKTE 307 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GIP LS++P+LG LF NS + + + + TP L+ Sbjct: 308 AGIPFLSQLPLLGNLFTNSFQHIDRRVLIVFITPKLI 344 >gi|149195014|ref|ZP_01872107.1| type II and III secretion system protein:NolW-like protein [Caminibacter mediatlanticus TB-2] gi|149134935|gb|EDM23418.1| type II and III secretion system protein:NolW-like protein [Caminibacter mediatlanticus TB-2] Length = 579 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 121/246 (49%), Gaps = 9/246 (3%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGKFV 239 K ++N L+ ++QV +K I E+ QIG + + S S + +A+ GG + Sbjct: 301 KTIINALDTP-KEQVYVKARILEISNTKAAQIGNRLGLYAGSGTTSGLYTLSANLGGPAI 359 Query: 240 S---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295 + ++ + + L LE A + L+EP++ I+ ++ G Sbjct: 360 AFDVASLGLTIPTIKQGIALGATLDLLETYGAAKKLSEPSILCINNTPSTIYVGKTVSVL 419 Query: 296 -KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 +S+T + S T D G+ L P + S ++ L + + + + G + +MP R Sbjct: 420 TGKTTSTTTSESYTRQDIGLTLKVKPRIDSDNKVALNVDAVIEDLLPG-SPVNMPITSKR 478 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +TT + +G +I++ GL++D+ +PLL IPILGALFR+ + N+++T + I Sbjct: 479 TINTTTIVRNGQSIIIGGLVRDNKDITLNKVPLLGDIPILGALFRHKQINKDKTTLVIVL 538 Query: 415 TPFLVK 420 TP++VK Sbjct: 539 TPYIVK 544 >gi|258627001|ref|ZP_05721799.1| MSHA biogenesis protein MshL [Vibrio mimicus VM603] gi|262172506|ref|ZP_06040184.1| MSHA biogenesis protein MshL [Vibrio mimicus MB-451] gi|258580675|gb|EEW05626.1| MSHA biogenesis protein MshL [Vibrio mimicus VM603] gi|261893582|gb|EEY39568.1| MSHA biogenesis protein MshL [Vibrio mimicus MB-451] Length = 558 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 111/277 (40%), Gaps = 41/277 (14%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233 ++V L I+ + QV L+ I EV Q G + +S+G S + + D Sbjct: 260 RQVTEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGSGTISQD 319 Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G +S GG ++ V+ SF+ V+ + + L+ P +TA + Sbjct: 320 SSGNPISAVLPGLDAIGTLLGGQSNL--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 377 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331 Q A G Y T SS T ++T G+ L TP + G + L Sbjct: 378 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 437 Query: 332 IQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + V ++P R +R++D+ + G +V+ GL+K + Sbjct: 438 VHPAVIEVEQQTKRITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 497 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 498 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 534 >gi|90416464|ref|ZP_01224395.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2207] gi|90331663|gb|EAS46891.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2207] Length = 754 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 4/197 (2%) Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G S A D G + G FS+ + D F + L ALE +++P + Q Sbjct: 557 GLGDSLAVDLG--VDNPTGSFSLGYLTDNFLIDLELSALESDGFGEIVSQPKVLTGDKQQ 614 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A SG + Y+ +SS GATS+ + + L TP + RI + + Sbjct: 615 AVIKSGTEIAYQKATSS-GATSIEFKEAVLQLEVTPQITPDNRIIMDLLVSQDSVGAFTP 673 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 G+ PS + + +T + +G T+VL G+ + + + +PLL +P LG LFRN N Sbjct: 674 TGE-PSIDITQIETQALVGNGQTLVLEGIFQTEEVNGTDKVPLLGDLPFLGKLFRNDLRN 732 Query: 405 REETEIFIAATPFLVKP 421 E+ EI TP ++ Sbjct: 733 IEKREILSFITPKIIDD 749 >gi|307634685|gb|ADI83160.2| type II secretion system lipoprotein GspD, putative [Geobacter sulfurreducens KN400] Length = 632 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 12/249 (4%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKFV 239 +V+ L+ QV ++ IAEV D LK +G Q + S A F Sbjct: 349 QVIQKLDKR-RRQVFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLDPFNFLSA 407 Query: 240 SEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + G F + L+ S + AL AI L+ P + + A G + Sbjct: 408 TSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPF 467 Query: 296 KTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 + ++ T S+ D G+ L TP + + L I E+S + Sbjct: 468 LSQTNLTTGGISQQSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVT 527 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R A T V + T+V+ GL++D + IPLL IP+LG LF+ RE+T + Sbjct: 528 TKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKSTRREKTNLM 587 Query: 412 IAATPFLVK 420 I TP +++ Sbjct: 588 IVLTPRIIR 596 >gi|90580158|ref|ZP_01235965.1| MSHA biogenesis protein MshL [Vibrio angustum S14] gi|90438460|gb|EAS63644.1| MSHA biogenesis protein MshL [Vibrio angustum S14] Length = 548 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 117/306 (38%), Gaps = 33/306 (10%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 V+ GM+ + D + + + L K+ + + + QV L+ I EV Sbjct: 220 VVSGMIGS-GDGRNVMVSPQAGLISVRAFPNELREVKEFLGMSQRRLKRQVVLEAKIMEV 278 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDR 253 + Q G + SS G + + GG +SE + Sbjct: 279 TLNDSYQQGIDWNNLTSSIGGTGIIVNEMKDAANAAASILPGGNAISELLGGQTNIKITD 338 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------- 305 +F V+ L + L+ P +TA + Q A GG + T SS+ + Sbjct: 339 GNFSAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNNVSP 398 Query: 306 --SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS----------YRV 353 S+T G+ L TP + G + L + V + ++ + + Sbjct: 399 DVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVQNEQKTIEVGTAKPMVLPLAKSTI 458 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R++D+ + +G +V+ GL+K I +P L IP +G LFR+ +++TE+ I Sbjct: 459 RESDSIIHARTGDVVVIGGLMKSSINDQVSKVPFLGDIPGIGNLFRHINKVKKKTELVIL 518 Query: 414 ATPFLV 419 P +V Sbjct: 519 LKPTVV 524 >gi|39995438|ref|NP_951389.1| general secretion pathway protein D [Geobacter sulfurreducens PCA] gi|39982201|gb|AAR33662.1| general secretion pathway protein D, putative [Geobacter sulfurreducens PCA] Length = 632 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 12/249 (4%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKFV 239 +V+ L+ QV ++ IAEV D LK +G Q + S A F Sbjct: 349 QVIQKLDKR-RRQVFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLDPFNFLSA 407 Query: 240 SEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + G F + L+ S + AL AI L+ P + + A G + Sbjct: 408 TSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPF 467 Query: 296 KTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 + ++ T S+ D G+ L TP + + L I E+S + Sbjct: 468 LSQTNLTTGGISQQSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVT 527 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R A T V + T+V+ GL++D + IPLL IP+LG LF+ RE+T + Sbjct: 528 TKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKSTRREKTNLM 587 Query: 412 IAATPFLVK 420 I TP +++ Sbjct: 588 IVLTPRIIR 596 >gi|77361610|ref|YP_341185.1| mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Pseudoalteromonas haloplanktis TAC125] gi|76876521|emb|CAI87743.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Pseudoalteromonas haloplanktis TAC125] Length = 552 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 21/254 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGV 250 + QV L+ I E+ Q G S G S SFA G G +S Sbjct: 283 QRQVILEAKIIEITLKDEYQQGVNWERISSGLGSSISFATTAGNFGNNLSASLGGVSSLT 342 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----------VSS 300 ++R F V++ LE ++ L+ P +TA + Q A G + T ++ Sbjct: 343 IERGDFNGVINLLETQGDVQMLSNPRVTATNNQKAVIKVGQDEYFVTNVSSTTVTGTSTT 402 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSY 351 ++ +T G+ L TP + G + L + V+E + + Sbjct: 403 TSPEIDLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETQEQLKVITLDDQRFELPLAQS 462 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 +R++DT + SG +V+ GL++ Q + P+L IPI G LF+N R +E+ E+ Sbjct: 463 NIRESDTVIRAQSGEIVVIGGLMQTSTQDEETKTPILGDIPIFGNLFKNIRKRQEKKELI 522 Query: 412 IAATPFLVKPVAMR 425 I P +V P + Sbjct: 523 ILIRPTVVMPDTWK 536 >gi|51556732|gb|AAU06138.1| MshL [Pseudoalteromonas tunicata] Length = 563 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 105/264 (39%), Gaps = 23/264 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADF 234 ++ K+ + L + + QV L+ I EV Q G GS+ + A+ Sbjct: 278 AAMKEFLRLGEESLQRQVILEAKIIEVTLKDDYQQGVNWKEVLGHIGSTDLTFATTASGQ 337 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G ++ G V F V+ L ++ L+ P +TA + Q A G Sbjct: 338 IGNTITAGIGGVSSLVFKNADFSGVVSLLSTQGDVQMLSNPRVTATNNQKAVIKVGQDEY 397 Query: 295 YKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 + T SST S+T G+ L TP + G + L + V+E Sbjct: 398 FVTEVSSTTVTGNATTTTPEISLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETAEQRK 457 Query: 345 AGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + +R++DT + SG +V+ GL++ + PLL +P+LG Sbjct: 458 VITLNNEEFVLPLAQSNIRESDTVIRAGSGEIVVIGGLMQTVTTDEESKTPLLGDMPVLG 517 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF++ R +++ E+ I P +V Sbjct: 518 HLFKSVRKRQDKKELIILIKPTVV 541 >gi|325922269|ref|ZP_08184050.1| type IV pilus secretin PilQ/competence protein [Xanthomonas gardneri ATCC 19865] gi|325547222|gb|EGD18295.1| type IV pilus secretin PilQ/competence protein [Xanthomonas gardneri ATCC 19865] Length = 620 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 108/272 (39%), Gaps = 34/272 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------- 221 +++++ ++ DQV ++ I + +G + I G Sbjct: 344 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIAGRRQYGDNTGVISGSTANNVS 402 Query: 222 ------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + +F G S G + + F+ + L A++ ++ P Sbjct: 403 IINDGLHNVPAGLNFNLPAGTFTTSTAGSIAYTLLGRNFALDMELSAMQEEGRGEVVSNP 462 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + + G + Y T+++++G +V + + L TPT+ + R+ L Sbjct: 463 RIVTANQREGVIKQGREIGYVTITAASGGGQSQANVQFKEVLLELKVTPTITNDNRVFLN 522 Query: 332 IQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + + E + G +P R+ +T V + G T+V+ G+ + ++ +P L Sbjct: 523 MNVKKDEVARFIVLDGYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESVSKVPFL 582 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP LG LF+ ++E+ E+ + TP +++ Sbjct: 583 GDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 614 >gi|88858661|ref|ZP_01133302.1| MSHA biogenesis protein MshL [Pseudoalteromonas tunicata D2] gi|88818887|gb|EAR28701.1| MSHA biogenesis protein MshL [Pseudoalteromonas tunicata D2] Length = 563 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 105/264 (39%), Gaps = 23/264 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADF 234 ++ K+ + L + + QV L+ I EV Q G GS+ + A+ Sbjct: 278 AAMKEFLRLSEESLQRQVILEAKIIEVTLKDDYQQGVNWKEVLGHIGSTDLTFATTASGQ 337 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G ++ G V F V+ L ++ L+ P +TA + Q A G Sbjct: 338 IGNTITAGIGGVSSLVFKNADFSGVVSLLSTQGDVQMLSNPRVTATNNQKAVIKVGQDEY 397 Query: 295 YKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 + T SST S+T G+ L TP + G + L + V+E Sbjct: 398 FVTEVSSTTVTGNATTTTPEISLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETAEQRK 457 Query: 345 AGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + +R++DT + SG +V+ GL++ + PLL +P+LG Sbjct: 458 VITLNNEEFVLPLAQSNIRESDTVIRAGSGEIVVIGGLMQTVTTDEESKTPLLGDMPVLG 517 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF++ R +++ E+ I P +V Sbjct: 518 HLFKSVRKRQDKKELIILIKPTVV 541 >gi|791156|gb|AAA65694.1| mannose-sensitive hemagglutinin D [Vibrio cholerae] Length = 559 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 67/277 (24%), Positives = 107/277 (38%), Gaps = 41/277 (14%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233 ++V L I+ + QV + I EV Q G S SS+G S S D Sbjct: 261 RQVNEFLGISQQRMHRQVISEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQD 320 Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G ++ GG +V V+ SF+ V+ + + L+ P +TA + Sbjct: 321 SNGNPITSVLPGLDAIGNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 378 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331 Q A G Y T SS T ++T G+ L TP + G + L Sbjct: 379 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 438 Query: 332 IQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + V E + +R++D+ + G +V+ GL+K + Sbjct: 439 VHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 498 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 499 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535 >gi|269213782|ref|ZP_06158175.1| type IV pilus secretin PilQ [Neisseria cinerea ATCC 14685] gi|269145356|gb|EEZ71774.1| type IV pilus secretin PilQ [Neisseria cinerea ATCC 14685] Length = 327 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 54/270 (20%), Positives = 108/270 (40%), Gaps = 32/270 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----- 236 +K+++ L++ QV ++ I E + +G + G+ + F + GG Sbjct: 51 RKLIDELDVP-AQQVMIEARIVEATDGFARDLGVKFGYGGTERQTAWGFNSGSGGISAAN 109 Query: 237 -----------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 + ++ L + L A E+ + +TLA Sbjct: 110 NGGTGGNIGTSSGRWSVNTNINLPVAAAANSIALVRALSSGALNLELSASEQLSKTKTLA 169 Query: 274 EPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 P + + Q A SG + Y+ + S + T+ T + L TP + G+I + Sbjct: 170 NPRVLTQNRQEAKIESGTEIPYQDTSTSGNNTTTTTTFKKAVLGLVVTPNITPDGQIIMN 229 Query: 332 IQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ P+ V + + DT + +GGT+++ G+ +++ IPLL Sbjct: 230 VKINKDTPIDCRVKNEATKCIQTKNLDTQAMVENGGTLIVGGIYEEENGNTLTKIPLLGD 289 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420 IP++G LF+ + N+ E+ I TP ++ Sbjct: 290 IPVIGNLFKTRQNNQSRRELLIFITPRIMD 319 >gi|307579783|gb|ADN63752.1| general secretion pathway protein D [Xylella fastidiosa subsp. fastidiosa GB514] Length = 721 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 87/344 (25%), Positives = 137/344 (39%), Gaps = 47/344 (13%) Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 + +V LH T+ S AVE T L ++ + S + V+ L++ QV ++ Sbjct: 382 NGSVTLHVQGDTVGVS--AVEEINTLLVRATPQAW--KSIRDVIEKLDVM-PMQVHIEAQ 436 Query: 202 IAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKFVSEG-----GD 244 +AEV G S S+G A G G Sbjct: 437 VAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAARSGWKSIAGK 496 Query: 245 FSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + G+ F + +++AL++ T +R L P++ + A+ G + + S + Sbjct: 497 VTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGARIPINSTSIN 556 Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGV 343 TG +SV D GV+L P V G + L I EVS P + Sbjct: 557 TGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGSLPAACSSASSTLVN 616 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +A R+ T + SG TI+LAGL+ + + G+P LSK+PI+G LF Sbjct: 617 SAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQ 676 Query: 404 NREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFN 446 N EI + TP +V+ P R+L D YS + +A Sbjct: 677 NNNRREIIVLLTPEIVRNPQEARNL---TDEYSQKFNAMEPLPG 717 >gi|28198648|ref|NP_778962.1| general secretory pathway protein D precursor [Xylella fastidiosa Temecula1] gi|182681332|ref|YP_001829492.1| general secretion pathway protein D [Xylella fastidiosa M23] gi|28056739|gb|AAO28611.1| general secretory pathway protein D precursor [Xylella fastidiosa Temecula1] gi|182631442|gb|ACB92218.1| general secretion pathway protein D [Xylella fastidiosa M23] Length = 775 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 87/344 (25%), Positives = 137/344 (39%), Gaps = 47/344 (13%) Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 + +V LH T+ S AVE T L ++ + S + V+ L++ QV ++ Sbjct: 436 NGSVTLHVQGDTVGVS--AVEEINTLLVRATPQAW--KSIRDVIEKLDVM-PMQVHIEAQ 490 Query: 202 IAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKFVSEG-----GD 244 +AEV G S S+G A G G Sbjct: 491 VAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAARSGWKSIAGK 550 Query: 245 FSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + G+ F + +++AL++ T +R L P++ + A+ G + + S + Sbjct: 551 VTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGARIPINSTSIN 610 Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGV 343 TG +SV D GV+L P V G + L I EVS P + Sbjct: 611 TGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGSLPAACSSASSTLVN 670 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +A R+ T + SG TI+LAGL+ + + G+P LSK+PI+G LF Sbjct: 671 SAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQ 730 Query: 404 NREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFN 446 N EI + TP +V+ P R+L D YS + +A Sbjct: 731 NNNRREIIVLLTPEIVRNPQEARNL---TDEYSQKFNAMEPLPG 771 >gi|297570326|ref|YP_003691670.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] gi|296926241|gb|ADH87051.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] Length = 514 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 100/245 (40%), Gaps = 13/245 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKFVSEGGDFSV-- 247 QV ++ I E +++ +++G Q A F G + E V Sbjct: 259 TPQVLIEAHIIETNQEVARELGVQWGSFWRGQQRVSDAAGGFTYQAGNPIGEQYSLDVLT 318 Query: 248 ------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + E L AL+R + L+ P++ + A SG + Y+++ Sbjct: 319 GEVGFYTASVAGNILEMQLQALQREGKVNILSRPSVATLDNHEAVLESGTEVPYQSI--E 376 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 G TSV D + L TP V+S I L+I+ + E + P + A T + Sbjct: 377 DGTTSVQYKDAVLRLLVTPQVISRENIKLKIEAQKDEVDLTRTVMGNPFIIKKLAQTNLI 436 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G T+V+AGL K+ G+PLL IP LG FR+ E E+ I TP ++ Sbjct: 437 VEDGSTVVIAGLAKERQASSSTGVPLLKNIPGLGVFFRSDARAGEFEELLIFITPRILSA 496 Query: 422 VAMRD 426 + + Sbjct: 497 DNLEN 501 >gi|313682348|ref|YP_004060086.1| type ii and iii secretion system protein [Sulfuricurvum kujiense DSM 16994] gi|313155208|gb|ADR33886.1| type II and III secretion system protein [Sulfuricurvum kujiense DSM 16994] Length = 535 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 116/284 (40%), Gaps = 18/284 (6%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-----------GGKFVS 240 QV ++ I E+ K++G ++ ++G + G + F + V+ Sbjct: 255 DRQQVYVRAKIIEISEGKSKEVGIKYGLSGGTVGSNGVFTFNTMLGDGTAAAVALDPSVT 314 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 F + + + + L A L+EP++ I +S G + + Sbjct: 315 TALKFDIPTITSGIALGANIALLNTNGAAEILSEPSILCIDNLESSIYVGKTESISSGVT 374 Query: 301 STGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 T +T D G+ L P + + ++ L + ++ + N +PS R+ Sbjct: 375 QGVGTGITQNFTRQDIGLTLKIKPRLSNDNKVLLGVNAKLEDIDSNTNL-QLPSTTKREV 433 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T+ + +G T+++ GL+++ +P L IP+LG LFR+ ++ + I TP Sbjct: 434 ITSAIVNNGETVIIGGLIREKTDHNDNRVPFLGDIPVLGHLFRDESSKTDKINLVILLTP 493 Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 ++++ DLS + D +A + +R+ + K+ S Sbjct: 494 YIIE--KSGDLSSLRAQLNQLDAIQARYVDRITQSLESKKKSNP 535 >gi|146307949|ref|YP_001188414.1| general secretion pathway protein D [Pseudomonas mendocina ymp] gi|145576150|gb|ABP85682.1| general secretion pathway protein D [Pseudomonas mendocina ymp] Length = 645 Score = 173 bits (438), Expect = 7e-41, Method: Composition-based stats. Identities = 68/271 (25%), Positives = 118/271 (43%), Gaps = 28/271 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------TGS 222 ++ + ++ L++ QV ++ I EV DI +G Q ++ TG Sbjct: 330 ATLEDIVRQLDVP-RAQVMVEAAIVEVSGDITDAVGVQWAVDARGNTGGLGGVNFGGTGL 388 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 S G + D ++ G+ F ++ AL + L+ P+L + Sbjct: 389 SVGTVLQILQSGEIPENTTLPDGAIIGIGSD-RFGALITALSANSKSNLLSTPSLLTLDN 447 Query: 283 QSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 Q A G ++T S +T A T++ D GV L TP++ + L I+ E Sbjct: 448 QKAEILVGQNVPFQTGSYTTDASGAGNPFTTIERKDIGVTLKVTPSINEGATLRLEIEQE 507 Query: 336 VSE--PVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 +S P G+NA + R +T+ G IVL GL++DD+ Q +PLL IP Sbjct: 508 ISSIAPSTGLNAQAVDLVTNKRSIKSTILADDGQVIVLGGLIQDDVTQSISKVPLLGDIP 567 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA 423 ++G LFR++R + + + + P +V+ A Sbjct: 568 LIGGLFRSTRDSHVKRNLMVFLRPTVVRDGA 598 >gi|258623356|ref|ZP_05718360.1| MSHA biogenesis protein MshL [Vibrio mimicus VM573] gi|258584322|gb|EEW09067.1| MSHA biogenesis protein MshL [Vibrio mimicus VM573] Length = 554 Score = 173 bits (438), Expect = 7e-41, Method: Composition-based stats. Identities = 65/277 (23%), Positives = 111/277 (40%), Gaps = 41/277 (14%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233 ++V L I+ + QV L+ I EV Q G + +S+G + + + D Sbjct: 256 RQVTEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISQD 315 Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G +S GG ++ V+ SF+ V+ + + L+ P +TA + Sbjct: 316 SSGNPISAVLPGLDAIGTLLGGQSNL--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 373 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331 Q A G Y T SS T ++T G+ L TP + G + L Sbjct: 374 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 433 Query: 332 IQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + V ++P R +R++D+ + G +V+ GL+K + Sbjct: 434 VHPAVIEVEQQTKRITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 493 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 494 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 530 >gi|303248827|ref|ZP_07335077.1| general secretion pathway protein D [Desulfovibrio fructosovorans JJ] gi|302489768|gb|EFL49699.1| general secretion pathway protein D [Desulfovibrio fructosovorans JJ] Length = 695 Score = 173 bits (438), Expect = 7e-41, Method: Composition-based stats. Identities = 71/316 (22%), Positives = 116/316 (36%), Gaps = 46/316 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--SSSGPSKSFAADFGG--- 236 +++ L+ V ++ I EV D G G ++ G +K +GG Sbjct: 353 DEIIAQLD-RPRRGVFVEALIMEVSTDKSVTFGVNWVAGGRVNAVGDNKKGGLVYGGFES 411 Query: 237 --------KFVSEGGDFSVK--------GVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 ++ G SV G + + ++ + L+ P L + Sbjct: 412 SSTSVGTQNSLTLPGGLSVGMLTFPVKIGDFVYSNIQALISDGKSNNTFNILSTPQLMTL 471 Query: 281 SGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + AS T Y T + S D G L TP + I L+I Sbjct: 472 DNEEASITVAENRPYLTATDSGQNKQDRTYQQFDYKDVGTKLKITPHIGQSDSIRLKILQ 531 Query: 335 EVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 EVS P+ R R TTV++ G TIV++GL+ Q +P +S I Sbjct: 532 EVSRVDKAETLDTGSLQPTTRKRATQTTVQVKDGQTIVISGLMGVSDQDSFSNVPGISDI 591 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P+LG LF++ RE+T +++ TP +V+ A A + + + Sbjct: 592 PVLGWLFKHKSKTREKTNLYVFITPRIVQ---------------SPAQAAAIHQEKASAL 636 Query: 452 YGPKEASEVEGQNYKG 467 EAS+VE +G Sbjct: 637 SHAIEASQVEEPRTEG 652 >gi|297581573|ref|ZP_06943496.1| general secretion pathway protein D [Vibrio cholerae RC385] gi|297534411|gb|EFH73249.1| general secretion pathway protein D [Vibrio cholerae RC385] Length = 674 Score = 173 bits (438), Expect = 7e-41, Method: Composition-based stats. Identities = 70/374 (18%), Positives = 137/374 (36%), Gaps = 71/374 (18%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181 + L+R I ++ + + V++ +D ++ +SE ++ G Q S Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKR 304 Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216 +VM N L + QV ++ I E+ +G Q Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364 Query: 217 HSI-----------TGSSSGP----------------------------SKSFAADFGGK 237 TG+S G + + D+ Sbjct: 365 WGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTETKAVYDTDNNFLRNETTTTKGDYSTL 424 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + G + + +++A+ ++ L+ P++T + ASF G + T Sbjct: 425 ASALSGIQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVIT 484 Query: 298 VSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 SS+ +V + G+ L P + + L+I+ EVS V+G N + Sbjct: 485 GSSAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSN-VLGANGAVDVRFA 543 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR++ E+ + + Sbjct: 544 KRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV 603 Query: 413 AATPFLVKPVAMRD 426 P +++ D Sbjct: 604 FIKPTIIRDGMTAD 617 >gi|294101775|ref|YP_003553633.1| type II and III secretion system protein [Aminobacterium colombiense DSM 12261] gi|293616755|gb|ADE56909.1| type II and III secretion system protein [Aminobacterium colombiense DSM 12261] Length = 556 Score = 173 bits (438), Expect = 7e-41, Method: Composition-based stats. Identities = 61/291 (20%), Positives = 118/291 (40%), Gaps = 30/291 (10%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV------MNLLNIAGEDQVTLKVTIAE 204 T + ++A + + + Y + +++ + L++ G+ QV ++ I E Sbjct: 270 ASTAKMVKQATGVQKIVEDERLNTLYVTADREQLLKVERYVELIDRPGK-QVMIEARIVE 328 Query: 205 VRR-----------DILKQIGFQHSITGSSS--GPSKSFAADFGGKFVSEGGDFSVKGVL 251 + I K ++ G+ G S S++ G+ ++ S+ G + Sbjct: 329 IADRASHEVASCLESIYKHWMLEYKGRGTPGRIGYSDSYSEGMFGEDIT-----SLSGTV 383 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + + ++ LE+ LAEP++ I G A ++ Y + G + + + Sbjct: 384 KK--LDALISTLEKEEKGHILAEPSVITIEGTKARIQLVQKYPYVSTRDEAGNPTYVSEE 441 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSGGTI 368 G L TP V I +++ + E V G P R+ +T V + G Sbjct: 442 VGPQLEITPFVGRDEIITIKLVIKTGEVVSWREGARGETYPETSTRQVETQVRVRDGEPF 501 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V+ GL K+ + + PLL IPILG+LF +E+ E+ I P ++ Sbjct: 502 VIGGLFKELKRGNQYKFPLLGDIPILGSLFSTQYTEKEKNEVIIIVIPHIL 552 >gi|115380040|ref|ZP_01467087.1| general secretion pathway protein D [Stigmatella aurantiaca DW4/3-1] gi|310820456|ref|YP_003952814.1| general secretion pathway protein D [Stigmatella aurantiaca DW4/3-1] gi|115362957|gb|EAU62145.1| general secretion pathway protein D [Stigmatella aurantiaca DW4/3-1] gi|309393528|gb|ADO70987.1| General secretion pathway protein D [Stigmatella aurantiaca DW4/3-1] Length = 850 Score = 173 bits (438), Expect = 7e-41, Method: Composition-based stats. Identities = 80/466 (17%), Positives = 155/466 (33%), Gaps = 79/466 (16%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 + F NP+ +PP + + V + + NK+II+ P + Sbjct: 270 VGGFGGNPTPGGMPPPDMSQGSGDTGGPVTLSQIIPDERT-NKLIIVASPGAFDRIQ--- 325 Query: 74 PTKA---DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 D+ S + ++ D +++ + + + A+ + Sbjct: 326 -EIVREVDIPTDSGGRINVYPLE---------NADSEELASTLQTLAQGTANRPRNPAQQ 375 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 R + G V+ + +A SQ+ +V+ L+I Sbjct: 376 QPPGVPRQNAAVAAELFSGEVK--VSADKATNSLVIVASQADFKNIV-----RVIEKLDI 428 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--------VSEG 242 QV ++ I EV D + G + G K+ +S G Sbjct: 429 P-RRQVFVEAVIMEVNLDRNSEFGINLHSGYKLDTSDGAATGIVGTKYTKQGAPPSLSLG 487 Query: 243 GDFSVKGVLDRFS----------------FETVLHALERATAIRTLAEPTLTAISGQSAS 286 ++ G L F VLHAL++ + + L+ P L + A Sbjct: 488 SLVNLGGFLAGLQGPVIPELKNLGIDVPAFGVVLHALQQNSDVNVLSTPHLLTSDNEEAE 547 Query: 287 FTSGGQHLYKTVSS-----------------------------STGATSVTTHDYGVVLH 317 T G ++ S + +T + + L Sbjct: 548 ITVGQNVPFQAGFSPGSLGGTIGGIGGVTGGTNTGLSSALLGLGSSFAPITRQNVELKLT 607 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + I + I TE +E + + P+ R A TTV T+V+ G+++D Sbjct: 608 VKPQINESDFIRMVI-TEQTEEIASSDPVLGPTTSKRSAKTTVVAKDQETVVIGGIMQDR 666 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + +P+L IP+LG LFR + + +T + + TP++++ + Sbjct: 667 TIESVSKVPILGDIPLLGHLFRETTRRKTKTNLLLFLTPYIIRNQS 712 >gi|254282305|ref|ZP_04957273.1| general (Type II) secretion pathway (GSP) D protein [gamma proteobacterium NOR51-B] gi|219678508|gb|EED34857.1| general (Type II) secretion pathway (GSP) D protein [gamma proteobacterium NOR51-B] Length = 346 Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------- 243 QV ++ +I EV G + + G G + + G Sbjct: 77 TPPTQVMIEASIIEVTLTDELSYGLEWTFNGQLGGSEYNGVGTLSDGNFNLGSPDSPLGQ 136 Query: 244 ---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 FS VL AL + I ++ P++ + +A G Q ++ S+ Sbjct: 137 LARGFSYSVTGGSGDIVAVLQALSTQSLINVISSPSVMVLDNNTAYIHVGDQVPIRSGST 196 Query: 301 STG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 + ++T D GV L P+V + G + L ++ V+ V ++ + R+ Sbjct: 197 VSNGGNVTENITYRDTGVKLSVRPSVNAGGLVTLDVEQSVT-DVGPIDVTGNRRFLEREI 255 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + V + SG ++VL GL++++ +EG+P L K+P++GALF + + TE+ + TP Sbjct: 256 MSRVAVRSGESVVLGGLIRENATNSEEGVPWLHKVPLIGALFGTTDKSDTRTELVVMITP 315 Query: 417 F 417 Sbjct: 316 R 316 >gi|157963580|ref|YP_001503614.1| pilus (MSHA type) biogenesis protein MshL [Shewanella pealeana ATCC 700345] gi|157848580|gb|ABV89079.1| pilus (MSHA type) biogenesis protein MshL [Shewanella pealeana ATCC 700345] Length = 556 Score = 172 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 23/250 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFG---GKFVSEGGDFSVK 248 + QV L+ + EV Q G S+ G + SF G ++ Sbjct: 283 QRQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDISFGTSPAAGLGDTITNALGGVTS 342 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GAT 305 L+ F T++ L+ + L+ P +TA + Q A G + T SST G T Sbjct: 343 IKLEGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGNT 402 Query: 306 SVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------ 352 VTT + G+ L TP + G + L I V + V + + Sbjct: 403 PVTTPEVELTPFFSGIALDVTPQIDEQGNVLLHIHPSVIDIKEQVKSIKIADSTLELPLA 462 Query: 353 ---VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R++DT ++ SG +V+ GL+K + +L +PLL IP LG F N + +TE Sbjct: 463 QSEIRESDTVIKAASGDVVVIGGLMKSENIELVSKVPLLGDIPFLGEAFTNRANSTVKTE 522 Query: 410 IFIAATPFLV 419 + I P +V Sbjct: 523 LVILLKPIVV 532 >gi|88811950|ref|ZP_01127203.1| Fimbrial assembly protein pilQ precursor [Nitrococcus mobilis Nb-231] gi|88790834|gb|EAR21948.1| Fimbrial assembly protein pilQ precursor [Nitrococcus mobilis Nb-231] Length = 686 Score = 172 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 108/270 (40%), Gaps = 35/270 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 +++++ L+I QV ++ + D ++G + + + S S Sbjct: 414 RRLVSKLDIP-VRQVLIESRVVIANDDFTNELGVRFGYSRNQSNFGTSNHGAVIGGTQPG 472 Query: 230 ---FAADFGGKFVSEGGDFSVK----------------GVLDRFSFETVLHALERATAIR 270 F G + + G+ + G + + + L A+E Sbjct: 473 NVNFGQSTGFEVPAGSGNEGLLVDLPVTAAAGSVGLAVGKIGSYLLQLELSAMENENRGN 532 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ P + + + A G Q ++ +SS GATSV + + L TP + RI L Sbjct: 533 LISTPRVITTNQKEAYIKQGVQIPFQQATSS-GATSVQFKEAVLGLTVTPQITPDDRILL 591 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 +Q NAG P+ + T V + +G TIVL G+ + + + +P + Sbjct: 592 DLQVTKDSRGEQTNAG--PAINTQSLGTQVLVDNGETIVLGGVYERNKNRTINRVPFFGE 649 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420 +P+LG LFRN+ E+ I TP ++K Sbjct: 650 LPLLGWLFRNTVRVDNNKELLIFVTPKILK 679 >gi|254186538|ref|ZP_04893055.1| general secretion pathway protein D [Burkholderia pseudomallei Pasteur 52237] gi|157934223|gb|EDO89893.1| general secretion pathway protein D [Burkholderia pseudomallei Pasteur 52237] Length = 316 Score = 172 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 99/260 (38%), Gaps = 29/260 (11%) Query: 212 QIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 Q G +SI ++G + G G + + + +L ++ Sbjct: 4 QTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDA 63 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPT 321 L+ P L + + A G T S S + T D G+ LH P Sbjct: 64 NVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQ 123 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + G + L++ TE S V G N P++ R +TV +G IVL GL++D+ Sbjct: 124 ITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDN 183 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 Q +PLL IP +G LFR+ R++T + + P ++ Sbjct: 184 YQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIIND---------------R 228 Query: 438 DDAKAFFFNRVNKIYGPKEA 457 + A+A NR + I G A Sbjct: 229 ETAQAVTSNRYDYIQGVTGA 248 >gi|154246049|ref|YP_001417007.1| general secretion pathway protein D [Xanthobacter autotrophicus Py2] gi|154160134|gb|ABS67350.1| general secretion pathway protein D [Xanthobacter autotrophicus Py2] Length = 767 Score = 172 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 127/287 (44%), Gaps = 32/287 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ T+AEV + G Q +T G ++ + S+ D ++ VL F Sbjct: 486 QVAIEATVAEVTLNDTLAYGVQFYLTSKDLGLGRNNGSVLN-TLSSDITDQAINRVLPGF 544 Query: 255 SF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------S 300 + +L AL T ++ L+ P++ + Q A+ G + T S S Sbjct: 545 NLLVGRENQPRAILDALHTVTDVKVLSNPSVVVVDNQKATLQVGDEVPVSTGSATVLSSS 604 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSY 351 +T ++ + G++LH P V G++ L I+ E+S + G P+ Sbjct: 605 NTVVNTIEYKNTGIILHVVPRVNVNGQVRLEIEQEISNVTQSDPTTSGTSSNSTGLTPTV 664 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 RK + + + SG T++LAGL+ + +++G+P+L +IP +G F ++ + TE+ Sbjct: 665 SQRKVKSVIAVASGQTVLLAGLISERHNGVRQGVPILDQIPGVGDAFAHTNGTVKRTELI 724 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 I P +++ D ++V ++ +A V + G +A Sbjct: 725 IFIRPQIIRDNV--------DAHTVAEELRAKLRGTVTTLPGGPQAP 763 >gi|221201610|ref|ZP_03574648.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2M] gi|221207315|ref|ZP_03580325.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2] gi|221172903|gb|EEE05340.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2] gi|221178426|gb|EEE10835.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2M] Length = 571 Score = 172 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 97/242 (40%), Gaps = 16/242 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-----------SGPSKSF--AADFGGK 237 QV ++ I E + + +G + ++ +GP + AA Sbjct: 300 RPSRQVRIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAAASAAGPRTALDLAARPLAG 359 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F + F++ + L ALE + ++ P + A G + Y+ Sbjct: 360 FDAATAGFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ- 418 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G T V + L P + GR+ L + +V++ +G P+ + Sbjct: 419 AKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQ 476 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T VE+ GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP Sbjct: 477 TRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPT 536 Query: 418 LV 419 +V Sbjct: 537 IV 538 >gi|262164147|ref|ZP_06031886.1| MSHA biogenesis protein MshL [Vibrio mimicus VM223] gi|262027675|gb|EEY46341.1| MSHA biogenesis protein MshL [Vibrio mimicus VM223] Length = 558 Score = 172 bits (437), Expect = 9e-41, Method: Composition-based stats. Identities = 65/277 (23%), Positives = 111/277 (40%), Gaps = 41/277 (14%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAAD 233 ++V L I+ + QV L+ I EV Q G + +S+G + + + D Sbjct: 260 RQVTEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISQD 319 Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G +S GG ++ V+ SF+ V+ + + L+ P +TA + Sbjct: 320 SSGNPISAVLPGLDAIGTLLGGQSNL--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 377 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLR 331 Q A G Y T SS T ++T G+ L TP + G + L Sbjct: 378 NQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLH 437 Query: 332 IQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + V ++P R +R++D+ + G +V+ GL+K + Sbjct: 438 VHPAVIEVEQQTKRITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQV 497 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 498 SKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 534 >gi|119503108|ref|ZP_01625193.1| general secretory pathway protein D precursor [marine gamma proteobacterium HTCC2080] gi|119461454|gb|EAW42544.1| general secretory pathway protein D precursor [marine gamma proteobacterium HTCC2080] Length = 743 Score = 172 bits (437), Expect = 9e-41, Method: Composition-based stats. Identities = 61/282 (21%), Positives = 115/282 (40%), Gaps = 14/282 (4%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 +G R V E + K + L++ QV ++ +I EV Sbjct: 437 NGDGNDEAAEVRVVADEENNSLMIYSTGMQYKTIKAAVEKLDVP-PTQVLIEASIVEVSL 495 Query: 208 DILKQIGFQHSITGSSSGPSKS-FAADFGGKFVSEGGDFSVKGVLDRF-------SFETV 259 + + G + + G S A G+F G + V +L + V Sbjct: 496 NDQLKYGLEWTFNNQIGGSDYSGIGAISDGEFNVAGAEGPVAQLLKGQLCSFKWCDYVAV 555 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVV 315 L+AL + + ++ P++ + A+ G Q + S+ T +++ D GV Sbjct: 556 LNALATESLVNVISTPSVMVLDNNVATINVGDQVPINSGSTITNGGNTIQNISYKDTGVQ 615 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 L P+V + G + L + V+ V ++ + R ++ V + SG ++VL GL++ Sbjct: 616 LTVRPSVNAGGLVTLDVLQTVT-DVGNIDVTGNRRFLERSIESRVAVRSGESVVLGGLIR 674 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 ++ + G+P K PI+G LF + R+ TE+ + TP Sbjct: 675 ENAANNENGVPWFYKAPIIGPLFGTTEKKRDRTELLVIITPR 716 >gi|86147852|ref|ZP_01066158.1| MSHA biogenesis protein MshL [Vibrio sp. MED222] gi|85834379|gb|EAQ52531.1| MSHA biogenesis protein MshL [Vibrio sp. MED222] Length = 562 Score = 172 bits (437), Expect = 9e-41, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 121/319 (37%), Gaps = 42/319 (13%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 ++E ++ G +++ + +A ++ R ++ + + + QV Sbjct: 227 QLEAAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIRE------VREFLGISQKRLQRQV 280 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------------GGKFVSE 241 L+ I EV Q G + SS+G + + G + Sbjct: 281 ILEAKIMEVTLSDGYQQGINWTKMFSSNGTNYTLGMGSIVKNAAGTIIPGKLPGMDPIGT 340 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSS 300 V+ SFE VL ++ + L+ P +TA + Q A G + T +SS Sbjct: 341 ALGGQSNLVVSGGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGIDKYFVTNLSS 400 Query: 301 STGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----------PV 340 S G+ +T G+ L TP + G + L + V E Sbjct: 401 SVGSGDNANVAPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEVKELNLGST 460 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 GV + +R++D+ + G +V+ GL+K + + +P L IP LG LFRN Sbjct: 461 TGVVTLPLAKSSIRESDSVIRAQDGDVVVIGGLMKSNTSDMTSKVPFLGDIPALGHLFRN 520 Query: 401 SRFNREETEIFIAATPFLV 419 + ++TE+ I P +V Sbjct: 521 TSQLTQKTELVILLKPTVV 539 >gi|171060077|ref|YP_001792426.1| type IV pilus secretin PilQ [Leptothrix cholodnii SP-6] gi|170777522|gb|ACB35661.1| type IV pilus secretin PilQ [Leptothrix cholodnii SP-6] Length = 726 Score = 172 bits (437), Expect = 9e-41, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 96/278 (34%), Gaps = 44/278 (15%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ +++ QV ++ I E + +G + T ++ G Sbjct: 443 QMIAKIDVP-VRQVMIEARIVEAEDSFGRTLGVKLGATDLRGINGGVPGWGGNNTRIALG 501 Query: 243 GD-----------------------------------------FSVKGVLDRFSFETVLH 261 G+ S+ G L Sbjct: 502 GNYSSIGDTTLQQATGSIYANSQFVNLPANTSSLGGATAATFALSLFGASSNRFLNLELS 561 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 ALE + ++ P + A G + Y+T + A S+ + L TP Sbjct: 562 ALEAEGKGKLVSSPRVVTADQVKALIEQGTELPYQTGGNQQTAPSIAFRKATLKLEVTPQ 621 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + G I + + +V++ +G + + T V + +GGT+V+ G+ + + Sbjct: 622 ITPEGNIIMDV--DVNKDSVGQQTLAGFAINTKHVKTQVLVENGGTVVIGGIFETTETES 679 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+L IP LG LFRN +TE+ + TP ++ Sbjct: 680 VNKVPVLGDIPFLGVLFRNKTRVANKTELLVFLTPKVI 717 >gi|94269217|ref|ZP_01291402.1| type II and III secretion system protein:Secretin/TonB, short-like [delta proteobacterium MLMS-1] gi|93451297|gb|EAT02179.1| type II and III secretion system protein:Secretin/TonB, short-like [delta proteobacterium MLMS-1] Length = 557 Score = 172 bits (437), Expect = 9e-41, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 128/325 (39%), Gaps = 51/325 (15%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTI 202 ++ G R +D +A ++ S + ++V L+ E QV L+ I Sbjct: 206 MIVGTDRGREDGSQARQVIVNSKSGLVMVRALPGELREVETFLDALLENALRQVMLEAKI 265 Query: 203 AEVRRDILKQIGFQHSITGSSS-----------------------GPSKSFAADF----- 234 EV D Q G +S G + + +AD Sbjct: 266 IEVELDEAFQSGINWGKLATSGRDTLKLGQIGGGTVLDDGVSAIAGNTGNLSADNYNPID 325 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G + GG F++ LD SF + L+ + L+ P + + Q A G Sbjct: 326 GTTTSAFGGVFTLATSLDHSSFHAFIELLKTQGDVHVLSSPRVATTNNQKALIKVGNDEY 385 Query: 295 YKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 + T S + T+ +T G+ L TPT+ + L I+ VS+ Sbjct: 386 FVTDVSFSTRTTGTDDTIYPDLELTPFFSGIALDVTPTITDGNEVILHIRPSVSQVRDQT 445 Query: 344 NAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + + R+R++D+ V SG I++ GL++D ++ + G+P L +P++ Sbjct: 446 KSFTVAGQTQSLPLALSRMRESDSIVRARSGQVIIIGGLMEDSWREQRAGLPGLGDLPLV 505 Query: 395 GALFRNSRFNREETEIFIAATPFLV 419 G LFR R+++ +TE+ I P +V Sbjct: 506 GNLFRQQRWSQRKTELVILLRPVVV 530 >gi|261253997|ref|ZP_05946570.1| MSHA biogenesis protein MshL [Vibrio orientalis CIP 102891] gi|260937388|gb|EEX93377.1| MSHA biogenesis protein MshL [Vibrio orientalis CIP 102891] Length = 552 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 127/331 (38%), Gaps = 41/331 (12%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 ++E+ ++ G +++ + +A ++ R + + + QV Sbjct: 218 QLEVAVSQLIGSGNGQSVVVTPQASVITIRAYPDEIRE------VRSFLGISQQRMHRQV 271 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEG-----GDFS 246 L+ I EV Q G S SS+G + + D G + + Sbjct: 272 ILEAKILEVTLSDGYQQGINWSKAFSSNGTNYTIGQGSIVKDASGSIIPAALPGLDAIGT 331 Query: 247 VKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + G V+ SFE VL + + L+ P +TA + Q A G Y T SS Sbjct: 332 LLGGQSNLVISSGSFEAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSS 391 Query: 302 ----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-------EVSEPVIGVN 344 + +T G+ L TP + G + L + +V E G Sbjct: 392 VVGSGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVDEQVKEIGYGNT 451 Query: 345 AGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + +P R +R++D+ + G +V+ GL+K + +P L IP LG LFRN+ Sbjct: 452 SITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTIDQVSKVPFLGDIPALGHLFRNTT 511 Query: 403 FNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 ++TE+ I P +V ++L R D Sbjct: 512 KLTQKTELVILLKPSVVGVNTWQKELERSRD 542 >gi|262401512|ref|ZP_06078079.1| MSHA biogenesis protein MshL [Vibrio sp. RC586] gi|262352227|gb|EEZ01356.1| MSHA biogenesis protein MshL [Vibrio sp. RC586] Length = 556 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 64/275 (23%), Positives = 107/275 (38%), Gaps = 37/275 (13%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++V L I+ + QV L+ I EV Q G + +S+G + K Sbjct: 258 RQVTEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISKD 317 Query: 239 VSEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S +V V+ SF+ V+ + + L+ P +TA + Q Sbjct: 318 ASGNPISAVLPGLDAIGTLLGGQSNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQ 377 Query: 284 SASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 A G Y T SS T ++T G+ L TP + G + L + Sbjct: 378 KAVIKVGTDEFYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVH 437 Query: 334 TEV-------SEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 V + V ++P R +R++D+ + G +V+ GL+K + Sbjct: 438 PAVIEVEQQTKKIVYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSK 497 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 498 VPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 532 >gi|221133689|ref|ZP_03559994.1| type IV pilus secretin PilQ [Glaciecola sp. HTCC2999] Length = 473 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 106/259 (40%), Gaps = 24/259 (9%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---------- 232 +++ L+I QV ++ + VR +I QIG + ITG + S +A Sbjct: 215 QMIKELDIP-VRQVLIESRMITVRDNIDDQIGIRWGITGQKGHLAVSGSAAAANDIKAGI 273 Query: 233 --------DFGGKFVSEGGDFSV--KGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + V+ G V ++D + L ALE +A P +T + Sbjct: 274 IPDISDRLNVNLPIVNSAGRLGVQIASLMDGTILDLELSALETENKGEIIASPRITVANQ 333 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 Q A G + Y S++ G+TSV + L P + RI L + Sbjct: 334 QEAYIEQGTEIPY-VQSTANGSTSVAFKKAVLSLKVIPQITPDDRIILDLVITQDTRGET 392 Query: 343 VNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 V+ P+ ++ T V + +G TIVL G+ + +P+L +P++G LF+N Sbjct: 393 VSTATGPAVAIDTQEIKTQVLVENGETIVLGGIFQKISTNDIAKVPILGNVPLVGGLFKN 452 Query: 401 SRFNREETEIFIAATPFLV 419 ++ E+ I TP ++ Sbjct: 453 KVSIEQKRELLIFVTPKII 471 >gi|291327009|ref|ZP_06126658.2| competence protein E [Providencia rettgeri DSM 1131] gi|291312226|gb|EFE52679.1| competence protein E [Providencia rettgeri DSM 1131] Length = 358 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 62/324 (19%), Positives = 121/324 (37%), Gaps = 16/324 (4%) Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV---SDTVVLHGMVRTIQDS 157 L+ + + L + + I+ + V + DT +L D Sbjct: 44 LVTENQPTPETAVAQVTPSKTSLTQKIFKLISTNVQEVRHLLEHPDTSLLSKNASIHHDI 103 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 + + + K QV + I R L+++G + Sbjct: 104 TTNSLIIKEDPDRLALIDEWIKHQDK--------PNKQVQITAHIISSSRTALQELGLEW 155 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + + +S F+V + D E L ALE+ + +A P L Sbjct: 156 GMMAGGNLNANHLYRYNRYSSISGQFAFNVLSLGDGL-LEMKLKALEKENLLSIIASPRL 214 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A Q AS G + Y T S+ T V D + + TP+++ +I L ++ + Sbjct: 215 VASHQQPASIQQGTEIPYVT--SNDKKTHVQFKDAVLGMDVTPSIVRDEKIELNLKISHN 272 Query: 338 EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 P + + + ++ T V + + T++L G+ + ++ + G+P LS IP LG Sbjct: 273 SPDTALTSSQHHHLAINKQEIATNVTIKNNETLILGGIFQQKQEKTEMGLPFLSHIPFLG 332 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF N+ + ++ + + TP L+ Sbjct: 333 TLFTNTAEHTDKRVLIVFITPKLI 356 >gi|307721768|ref|YP_003892908.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] gi|306979861|gb|ADN09896.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] Length = 565 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 71/390 (18%), Positives = 157/390 (40%), Gaps = 39/390 (10%) Query: 55 NKVIILQVPVDVQDVLVSDPT-----KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 N+ +L + ++ +++ + D V + +FGK G ++++I D + Sbjct: 24 NEYQVLPLQKKIKRLIIGNKETINVSLLDAVSAKGTLLKIFGKKTGNTSILVIYTDN-SI 82 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 N + + ++ +++ + + + ++ +D+ V+ G+ + D +R E+ Sbjct: 83 QNYHVYVNENLGYIQKMINIIEPNLRLS-KVGNDSTVIAGVFKDPHDKKRIYEIL----- 136 Query: 170 QSGRNQYANSSSKKVMNLLNIAGED-QVTLKVTIAEVRRDILKQI------GFQHSITGS 222 Q +++K+M+L + + K+ + V K + F + + Sbjct: 137 -----QKGGINTEKLMDLTKTQKVNKMIRTKLYLIAVDNQKAKDLGGVTGLSFFNKYVNA 191 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 ++ + + +A F G + G+F+ S L+ L+ L + L Sbjct: 192 TANAAAANSATFSGFLLDNLGNFTTS---TGNSVLATLNFLQTKGITNILDDTVLITTED 248 Query: 283 QSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVS 337 ++A+F GG+ T + T V +YG+ L T + + G + + + + S Sbjct: 249 KNATFRVGGELYIPTGITQNVGTAPTIQVEAKEYGLKLTLTSKFMQTNGYMHINVDIQDS 308 Query: 338 EPVIGV-------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + + +PS+ + T V + S I L G L + + +E +PL Sbjct: 309 AIDANIAHNVSLGDGISIPSFVSKNIKTNVVVKSEQVIALGGRLHSENSKSEEKVPLFGD 368 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420 IPILG LF++ N T++ P +V Sbjct: 369 IPILGELFKHKIENLGTTDLIFLLVPEIVD 398 >gi|121603587|ref|YP_980916.1| type IV pilus secretin PilQ [Polaromonas naphthalenivorans CJ2] gi|120592556|gb|ABM35995.1| type IV pilus secretin PilQ [Polaromonas naphthalenivorans CJ2] Length = 712 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 103/264 (39%), Gaps = 30/264 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFAADF 234 + + L+IA QV ++ I E + +G + + + S ++ Sbjct: 446 QNFIAKLDIA-VRQVLIEARIVEASDTFGRSLGVRLGGGTIGAAGALTRGNTNVSLGTNY 504 Query: 235 GGKFVSEGGDF-----SVKGVLDRFS--------------FETVLHALERATAIRTLAEP 275 G G+F S GV + S L ALE + ++ P Sbjct: 505 GATVADTSGNFVSFPASTLGVANAASSFAVSIFNASANRFLNLELSALEADGKGKIVSSP 564 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + A G + Y+T +SS GATS+ + L TP + G I L + + Sbjct: 565 RVVTADQTKALIEQGTEFPYQTATSS-GATSLAFRKANLKLEVTPQITPEGNIILDL--D 621 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V++ G + + T V + +GGT+V+ G+ + + +PLL +P LG Sbjct: 622 VNKDSRGETTAAGIAIDTKHIQTQVLVENGGTVVIGGIFTLEETNNEVKVPLLGDVPYLG 681 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF++ + E+ + TP ++ Sbjct: 682 NLFKSRERTSRKQEMLVFITPKMI 705 >gi|77163786|ref|YP_342311.1| fimbrial assembly protein pilQ precursor [Nitrosococcus oceani ATCC 19707] gi|254435512|ref|ZP_05049019.1| type IV pilus secretin PilQ subfamily, putative [Nitrosococcus oceani AFC27] gi|76882100|gb|ABA56781.1| Fimbrial assembly protein pilQ precursor [Nitrosococcus oceani ATCC 19707] gi|207088623|gb|EDZ65895.1| type IV pilus secretin PilQ subfamily, putative [Nitrosococcus oceani AFC27] Length = 699 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 103/269 (38%), Gaps = 31/269 (11%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ +K++ L+I QV ++ + D + +G + ++G A G Sbjct: 430 AALRKLVASLDIP-VRQVLIESRVVIASSDFSRDLGVRFGLSGRGDTSGTFDQATTSGSL 488 Query: 239 VSEGGDFSVKGV--------------LDRFSFETVLHAL-------------ERATAIRT 271 + + + D L L + Sbjct: 489 NGTTQIINRETLELQDRLNVNFPVTKKDAAKIALALTNLPLGALLELELSALQAEGRGEV 548 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 ++ P + + + A G + Y+ SSS GATSV+ + L TP + RI + Sbjct: 549 ISNPRVITSNQKEAIIEQGTEIPYQRASSS-GATSVSFKKAVLSLTVTPQITPDDRIIMD 607 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + V++ +G +PS RK T V + +G T+VL G+ + + + IP L + Sbjct: 608 L--GVTKDSVGKVFNGVPSINTRKVATQVLVNNGQTVVLGGIYEQEKNRAVRRIPFLGDL 665 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P G LFR+ + E+ I TP ++K Sbjct: 666 PYAGILFRDKSEFNNKRELLIFVTPKIIK 694 >gi|161523474|ref|YP_001578486.1| type IV pilus secretin PilQ [Burkholderia multivorans ATCC 17616] gi|160340903|gb|ABX13989.1| type IV pilus secretin PilQ [Burkholderia multivorans ATCC 17616] Length = 573 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 16/242 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGK 237 QV ++ I E + + +G + ++ + AA Sbjct: 302 RPSRQVRIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAGASPAGARTALDLAARPLAG 361 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F + F++ + L ALE + ++ P + A G + Y+ Sbjct: 362 FDAATAGFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ- 420 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G T V + L P + GR+ L + +V++ +G P+ + Sbjct: 421 AKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQ 478 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T VE+ GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP Sbjct: 479 TRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPT 538 Query: 418 LV 419 +V Sbjct: 539 IV 540 >gi|95929094|ref|ZP_01311839.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] gi|95134995|gb|EAT16649.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] Length = 553 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 37/275 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +N + + QV L+ I EV + Q G + + + + GG ++S+G Sbjct: 259 DYLNKTQVTLQRQVILEAKIIEVELNDGYQTGINWAGLIHNGNNTATIGQVGGGTYLSDG 318 Query: 243 GD------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 L FE + A++ ++ L+ P ++ ++ Q Sbjct: 319 VSEIAGTNPLVNGLVTSAFGGVFSTTLQFDDFEAFIEAVKSQGDVQVLSSPRISTLNNQK 378 Query: 285 ASFTSGGQHLYKTVSSSTGATSVT----------THDYGVVLHFTPTVLSPGRIGLRIQT 334 A G + T SS T T G+ L TP + GR+ L + Sbjct: 379 AVIKVGTDEFFVTDISSDTVTGTTTTTTPDITLTPFFSGIALDVTPQISGQGRVTLHVHP 438 Query: 335 EVSEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 VSE V + VR++DT VE SG +V+ GL+K+ + G+ Sbjct: 439 TVSEVVDQTKVITVAGQAQSLPLAFSSVRESDTIVEARSGQVVVIGGLMKNSDTREGAGV 498 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 PLL IP LG LFR+ + + ++E+ I P +V+ Sbjct: 499 PLLGDIPGLGHLFRHQKNSTSKSELIILLKPLVVE 533 >gi|298369928|ref|ZP_06981244.1| type IV pilus secretin PilQ [Neisseria sp. oral taxon 014 str. F0314] gi|298281388|gb|EFI22877.1| type IV pilus secretin PilQ [Neisseria sp. oral taxon 014 str. F0314] Length = 715 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 105/269 (39%), Gaps = 30/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------- 226 +K+++ L++ QV ++ I E + +G + G+ S Sbjct: 443 RKLIDELDVPT-RQVMVEARIVEAEEGFSRNLGVKFGAAGAGSRNAWGSNWSNAQNNNNT 501 Query: 227 ------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + S + S ++ L + L A E +TL+ Sbjct: 502 NASFNRGEVGYRTWSLDPNVSLPTASATSSIALVRSLSSGALGLELSASEELGKSKTLSN 561 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + + A SG + Y+ +SS GATSVT + L TP + G+I + ++ Sbjct: 562 PRVLTQDRKEAIIESGTEIPYQEATSS-GATSVTFKKAVLGLTVTPNITPDGQIIMTVKI 620 Query: 335 EVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 P+ + + +T + GGT+++ G+ +++ +PLL IP+ Sbjct: 621 NKDSPIDCQTDGLRTKCISTKNLNTQAMVEDGGTLIVGGIYEEENSNAVNKVPLLGDIPV 680 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422 +G LF++ + E+ I TP ++ V Sbjct: 681 VGNLFKSRGRSERRRELLIFITPRIMDGV 709 >gi|312143767|ref|YP_003995213.1| type II and III secretion system protein [Halanaerobium sp. 'sapolanicus'] gi|311904418|gb|ADQ14859.1| type II and III secretion system protein [Halanaerobium sp. 'sapolanicus'] Length = 629 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 64/315 (20%), Positives = 125/315 (39%), Gaps = 37/315 (11%) Query: 108 QMLNLDILIER-DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + ++ D ++ + F D + V + +V++G Sbjct: 249 EPGTRHVRVDYVDTEQIKEVIENFYPDIRLHVNNKTKRIVING----------------- 291 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 + S ++++ LN+ QV ++ + EV L+++G + ++ Sbjct: 292 -------PENRLDSVEQLVKQLNVP-RQQVVIETRVEEVSEGRLRELGIEGDLSQLRIIK 343 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + S+ + AL+ + +TLA P L ++G++A+ Sbjct: 344 DDHITDRRADSREPQPDKLSLT-------WPEFFRALDETSDSKTLANPRLMTLNGETAN 396 Query: 287 FTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IG 342 + Y+ V + + + + GV + FTP + I L I+ VS + Sbjct: 397 MAILDEVPYRVVEINDDGSRTETFEYAEAGVDIEFTPWITENKEIELSIKPRVSSFTQVT 456 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 AG P+ R R+ +T + L G T+ + GL++ D + IPLL IPI+G LF++ R Sbjct: 457 TAAGAPPALRSREVETMLRLNDGETLAIGGLIQTDQDGVITKIPLLGDIPIIGELFKSRR 516 Query: 403 FNREETEIFIAATPF 417 E+ I TP Sbjct: 517 NEGSHNELIIFVTPR 531 >gi|240141999|ref|YP_002966509.1| putative General secretion protein D [Methylobacterium extorquens AM1] gi|240011943|gb|ACS43168.1| putative General secretion protein D [Methylobacterium extorquens AM1] Length = 693 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 112/248 (45%), Gaps = 14/248 (5%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + L++ QV ++ TIAEVR + + G + G S + FG S G Sbjct: 417 IRNLDVL-PTQVLIEATIAEVRLNEALRHGVRWYFQAGGLGQGASMGSGFGTSGRSVTGQ 475 Query: 245 FSVKGVLDRFSFETV-----LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S + +S + ALE T + ++ P LT + Q+A+ G Q T S Sbjct: 476 GSAGEIALTYSLGLANAKLAISALESVTDVEIVSSPALTVLDNQTATLKVGEQVPIATRS 535 Query: 300 SSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSY 351 + + + + D GV+L TP V + G + L I+ E S+ V + D P+ Sbjct: 536 ARSVVNADAPLVNDIEMKDTGVILQVTPRVNAGGLVMLDIKQEASDVVPTTTSNLDSPTI 595 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+R+ +T+ + SG IVL G+++ + G+P L IP+LG N ++ TE+ Sbjct: 596 RLRQITSTIAVKSGAEIVLGGIIQRGRHRGAGGVPFLRDIPLLGTALNNIDSGQDRTELV 655 Query: 412 IAATPFLV 419 I P ++ Sbjct: 656 IIIRPTVM 663 >gi|239994918|ref|ZP_04715442.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) [Alteromonas macleodii ATCC 27126] Length = 582 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 113/314 (35%), Gaps = 46/314 (14%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + + ++ V + L + K +N + + QV L+ I EV + Q Sbjct: 250 SPTEGRQVVVSPQAGLVTVRALPSEIAVVKDFLNQSQESLQRQVVLEARIIEVTLNDGYQ 309 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV---------------------- 250 G + S S +F GG S + G+ Sbjct: 310 QGVRWDRIASGLTGSVNFGFS-GGAIASNFAANTAAGIDPAINAVNGIGNSISTDIGGVS 368 Query: 251 ---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + R F+ V++ L+ ++ L+ P +T + Q A G + T S++ S Sbjct: 369 TLRISRGDFDGVINMLQTQGDVQMLSNPRVTVTNNQKAVIKVGQDEYFVTDVSTSEDQSA 428 Query: 308 TTHD-----------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-------- 348 T + G+ L TP + G + L + V+E + Sbjct: 429 TQTENENDIELTPFFSGIALDVTPQIDRSGSVILHVHPSVTETAEQTKVIQVGDQQILLP 488 Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +R++DT + G +V+ GL++ + + PLL IP +G F+N + + Sbjct: 489 LAQSNIRESDTVIRARDGEIVVIGGLMETVTSEQESKTPLLGDIPFIGNAFKNKAKTQSK 548 Query: 408 TEIFIAATPFLVKP 421 E+ I P +V+P Sbjct: 549 RELVILIRPSVVQP 562 >gi|119505541|ref|ZP_01627613.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2080] gi|119458650|gb|EAW39753.1| type 4 fimbrial biogenesis protein PilQ [marine gamma proteobacterium HTCC2080] Length = 723 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 60/342 (17%), Positives = 116/342 (33%), Gaps = 72/342 (21%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 + + +VV+ +I + A +L+E + ++ +++ Sbjct: 393 EEGGSLVSDRGSVVVDERTNSIIITDTATKLAEI---------------RDLIERVDVPI 437 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------- 237 QV ++ I ++ +++G + S G Sbjct: 438 -RQVMIEARIVIASTNLDEELGIEWGGGYIGIDSSNGNIYSASGSREQVVSFNQDTVAGV 496 Query: 238 -------------------------------------FVSEGGDFSVKGVLDRFSFETVL 260 F+V + L Sbjct: 497 TPTLNYPVQGGQQQGGNQGGDGQQQQQGLGAALVDLGVSQATSGFAVGFTSNDLFLTAEL 556 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ALE + +++P + Q A+ SG + Y+ ++S GAT+V+ + + L TP Sbjct: 557 SALESSGQGEVVSQPKIITGDKQLATIKSGSEIPYQEGAAS-GATTVSFKEAVLKLEVTP 615 Query: 321 TVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + RI L + + V G +P+ + T V + +G T+VL G+ ++D Sbjct: 616 NITPDDRILLDLVVNQDSLGDLVPSGTGGLIPTINTTQLTTQVLVGNGETVVLGGVFQND 675 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P L IP LG LF+N+ +TE I TP ++ Sbjct: 676 EITQIRKVPFLGDIPYLGTLFKNTASKTSKTETLIFITPRIL 717 >gi|121997138|ref|YP_001001925.1| pilus (MSHA type) biogenesis protein MshL [Halorhodospira halophila SL1] gi|121588543|gb|ABM61123.1| pilus (MSHA type) biogenesis protein MshL [Halorhodospira halophila SL1] Length = 538 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 73/320 (22%), Positives = 125/320 (39%), Gaps = 37/320 (11%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV------MNLLNI 190 RV+ S++ + + T+ + + S + + ++ L Sbjct: 196 RVDTASNSDLWGQVEETVSRMIDDDDTASVVASPQAGTLAVRGMPESLRRVEAFVDRLQG 255 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-VSEGGDFSVKG 249 + QV L+ I EV Q G G G + + G +S G F++ Sbjct: 256 SLNRQVILEARILEVELGDDFQAGISWESLGRHDGQALEGSFRPGDNLELSSAGVFNIGI 315 Query: 250 V----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------S 299 R FE L ALE+ ++ L+ P ++ ++ Q A +G Y+T + Sbjct: 316 TRGQDGQRGFFEGFLRALEQQGDVQVLSTPQVSTLNNQKAVIKAGTDSFYQTDFSINYRT 375 Query: 300 SSTGATSVTTHD---------YGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNA 345 G + T + G+ L TP + G I L +Q V+E + Sbjct: 376 VEVGGQTTTQPELDPDFEPFFSGIALDVTPQIEESGWINLHVQPSVTEVRERERTLRTGR 435 Query: 346 GD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 GD + VR++D+ V SG IV+ GL+++ QQ +PLL ++P+LG LF Sbjct: 436 GDDEVRFSLAESDVRQSDSIVRARSGEMIVIGGLIEEREQQETSRVPLLGRVPLLGWLFT 495 Query: 400 NSRFNREETEIFIAATPFLV 419 R + E+ I P +V Sbjct: 496 QERQESSKYELVILLRPRVV 515 >gi|146338379|ref|YP_001203427.1| putative general secretion pathway protein D [Bradyrhizobium sp. ORS278] gi|146191185|emb|CAL75190.1| Putative general secretion pathway protein D [Bradyrhizobium sp. ORS278] Length = 780 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 80/400 (20%), Positives = 148/400 (37%), Gaps = 54/400 (13%) Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMV 151 G G G N+ ++ R + + S R ++ G+ Sbjct: 404 AAGTTAST--GFSGASQANIGVVANRGFNGTPPPTQVGLDGGSEARASSAGGKPLMDGVR 461 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTIAEVRRD 208 T + + YA+ + +++ + QV + TIAEV + Sbjct: 462 ITPDVVNNTLLI------------YADRENYRIIEATLRQCDRPQLQVAIDATIAEVTLN 509 Query: 209 ILKQIGFQHSITGSSSGP-------SKSFAADFGGKFVSEGGDFS---VKGVLDRFSF-- 256 G Q +T + G + + S G + + F+F Sbjct: 510 DNLTYGVQAYLTSKNLGLRPDQGSLLNTTSTSAPATVASAAGTITNAFLSRAFPGFNFLI 569 Query: 257 ------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGA 304 +L AL T ++ L+ P+L I Q+A+ G Q T S ++T Sbjct: 570 GSESQPSAILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQVPVSTGSATVLTTNNTVV 629 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 ++ + G++L P V G + L I+ E+S P+ RK ++V + S Sbjct: 630 NTIDYRNTGIILRVAPRVNENGNVRLEIEQEISNVSPQTANSLTPTVAQRKVKSSVAVAS 689 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T++LAGL+ + Q + G+P + +IP G LF N+ +R TE+ I P +++ Sbjct: 690 GQTVLLAGLISETHQGTRTGLPGVDQIPGFGDLFSNNDRSRGRTELIIFIRPQIIRDG-- 747 Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 D + V ++ ++ + P S ++ Q Sbjct: 748 ------TDAHYVAEELRSKLRGTIK----PVSTSALQAQR 777 >gi|58580480|ref|YP_199496.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622438|ref|YP_449810.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58425074|gb|AAW74111.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366378|dbj|BAE67536.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 770 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 55/335 (16%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + + +++ D V + AV + T L +S + SS + V+ L++ Sbjct: 433 GNGAVTLDVAGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 479 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------SSGPSKSFA 231 QV ++ +AEV Q G S +S ++ Sbjct: 480 -PMQVHIEAQVAEVNLTGKLQYGVNWYFENSVNAAADSAANSTGIGAGAGLASAAGRNIW 538 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D GK E G + + +++HAL+ T +R L P++ + A+ G Sbjct: 539 GDIAGKITGEKG---AQWTFLGKNAASIIHALDEVTNVRLLQTPSVFVRNNAEATLNVGS 595 Query: 292 QHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------ 339 + + S +TG +SV D GV+L P V G + L I EVS P Sbjct: 596 RIAINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSPGDRPAA 655 Query: 340 ----VIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VNA R+ T + SG TI+LAGL+ D GIP LSK+P++ Sbjct: 656 CTSATATVNAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDGSNGIPFLSKLPVV 715 Query: 395 GALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 GALF + N E+ + TP +V+ P R+L+ Sbjct: 716 GALFGSKSRNSARREVIVLITPSIVRNPQEARNLT 750 >gi|329905849|ref|ZP_08274237.1| Fimbrial assembly protein pilQ precursor [Oxalobacteraceae bacterium IMCC9480] gi|327547489|gb|EGF32305.1| Fimbrial assembly protein pilQ precursor [Oxalobacteraceae bacterium IMCC9480] Length = 327 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 101/280 (36%), Gaps = 46/280 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---- 237 +K++ + ++A QV ++ I E K +G + T + G Sbjct: 45 RKLIQITDVAT-RQVLIEARIVEADDTFSKNLGAKLGFTDLRTARGGDSGYQLSGNNRVG 103 Query: 238 ------------------------------FVSEGGDFSVKGVLDRFSFETV-------- 259 + G + G L F Sbjct: 104 LTGNYLGVGEQTGQATITDGSFIPNSQFVSLPAAGINGLNAGSLAVSLFSAAANRFLNLE 163 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE + ++ P + Q A G + Y+ +SS GATSV + L T Sbjct: 164 LSALEADGRGKVISSPRVVTADQQQALIEQGEEIPYQKATSS-GATSVEFKKANLKLEVT 222 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + G I L + +V++ G A + + T V++ +GGT+VL G+ Sbjct: 223 PQITPDGNIILTV--DVNKDSRGAPAPGGFAINTKHVKTNVQVENGGTVVLGGIFTQREL 280 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP IP++G LF+ + ++TE+ I TP +V Sbjct: 281 DSVTKIPFFGDIPVVGNLFKTTGRTNDKTELLIFITPKIV 320 >gi|148259896|ref|YP_001234023.1| general secretion pathway protein D [Acidiphilium cryptum JF-5] gi|146401577|gb|ABQ30104.1| general secretion pathway protein D [Acidiphilium cryptum JF-5] Length = 756 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 67/277 (24%), Positives = 121/277 (43%), Gaps = 13/277 (4%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + N+S + ++ L+I +V + TIAEV + + G Q S G + + Sbjct: 456 ADASENASVEAMLRKLDI-EPLEVEIDATIAEVDLNGALKYGTQFFF--KSGGINAVLST 512 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 F + G + + AL+ T ++ L+ P L +G++A+ G Sbjct: 513 GTTAALNQSFPGFVLAGHGADGA-PLAISALQSVTQVQVLSSPQLLVQNGRTANLLVGNL 571 Query: 293 HLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGV 343 Y + +S + T+ V + GV+L TP + S G + L + +VS P + Sbjct: 572 VPYLSQTSQSTLTTGAPVINSVNYQETGVILQITPHISSDGLVALTVSQQVSNVAPSVTT 631 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + P++ R ++V + G TI LAGL+ D++Q+ G+P L +P+LG LF Sbjct: 632 QGLNSPTFSERAVSSSVVVHDGQTIGLAGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDN 691 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 +R E+ + TP +V D ++ + A Sbjct: 692 SRARQELLVLITPHVVHDATDAAALTSDLEQALPNAA 728 >gi|258406114|ref|YP_003198856.1| type II and III secretion system protein [Desulfohalobium retbaense DSM 5692] gi|257798341|gb|ACV69278.1| type II and III secretion system protein [Desulfohalobium retbaense DSM 5692] Length = 499 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 106/256 (41%), Gaps = 21/256 (8%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---------DF 234 V+N L Q+ ++ +I E ++ +++G + +SG D+ Sbjct: 242 VLNHLE-RPRKQIHIEASIVEATQNTARELGMRWRGRYVTSGRGIEDVGIIGDAQEPEDW 300 Query: 235 GGKFVSEGGDFS----------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G + G + V G + + L ALE+ + LA P+LT + QS Sbjct: 301 GSAITTLPGSGTDTLGGLKLGTVVGEIAGNVLFSQLQALEKEGQVNILASPSLTTMDNQS 360 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 AS G + Y+T + G V D + L P ++ + + I E N Sbjct: 361 ASTQHGERVPYET-TDEDGDRVVKFEDVAMGLKVHPRIIEGDLMAMDIVVTKDEVDFSQN 419 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P R ++ +T + + +G TIV++GL K + + G+P L K+P L LF+ + Sbjct: 420 VQGNPLIRTKETETNLLVRNGETIVISGLSKQTVSGTEHGVPGLRKVPGLSWLFKGIDKS 479 Query: 405 REETEIFIAATPFLVK 420 + E + TP ++ Sbjct: 480 EDMEEFMVFITPTILD 495 >gi|78064965|ref|YP_367734.1| type II and III secretion system protein [Burkholderia sp. 383] gi|77965710|gb|ABB07090.1| type II and III secretion system protein [Burkholderia sp. 383] Length = 543 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 16/243 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADF----------GGK 237 QV ++ I E + + +G + ++ SG S +F G Sbjct: 272 RPSRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPSGESATFTTGARNALDLAARPLGG 331 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F + F++ + L ALE + ++ P + A G + Y+ Sbjct: 332 FEAATAGFTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQGSEVPYQ- 390 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G + V + L P + GR+ L + +V++ IG P+ + Sbjct: 391 AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQ 448 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T VE+ +GGT+ + G+ + + +PLL KIP LGALFR+ + E+ + TP Sbjct: 449 TRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQRNELVVFITPT 508 Query: 418 LVK 420 +V Sbjct: 509 VVD 511 >gi|189351753|ref|YP_001947381.1| type IV pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|189335775|dbj|BAG44845.1| type IV pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 528 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 16/242 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGK 237 QV ++ I E + + +G + ++ + AA Sbjct: 257 RPSRQVRIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAGASPAGARTALDLAARPLAG 316 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F + F++ + L ALE + ++ P + A G + Y+ Sbjct: 317 FDAATAGFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ- 375 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G T V + L P + GR+ L + +V++ +G P+ + Sbjct: 376 AKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQ 433 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T VE+ GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP Sbjct: 434 TRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPT 493 Query: 418 LV 419 +V Sbjct: 494 IV 495 >gi|163749924|ref|ZP_02157169.1| general secretion pathway protein D [Shewanella benthica KT99] gi|161330438|gb|EDQ01417.1| general secretion pathway protein D [Shewanella benthica KT99] Length = 711 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 61/287 (21%), Positives = 109/287 (37%), Gaps = 47/287 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 V+N L+I QV ++ I EV G Q + + G Sbjct: 335 DSVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGIQWATAAGGMTQFNNLGPTIGEVGAGV 393 Query: 236 ---------------------GKFVSEGGDFSVKGV-----------LDRFSFETVLHAL 263 K GD ++ + F ++ A+ Sbjct: 394 WLAQDQKASQTCTGSGDTQTCTKNPDTPGDITILAQALGKINGMAWGVAMGDFGALIQAI 453 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLH 317 T LA P++T + Q A+F G + T S S+ T+V + GV L Sbjct: 454 SSDTRSNILATPSITTLDNQEATFIVGDEVPILTGSQSSSNGNSNPFTTVERREVGVKLK 513 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + + L I+ EVS + ++ R+ TTV + SG +VL GL+ ++ Sbjct: 514 VIPQINEGTSVKLTIEQEVSGINGKTSVD--VTFATRRLTTTVMVDSGQIVVLGGLISEE 571 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 +Q+ + +P L +PI+G LFR+S ++++ + I +++ + Sbjct: 572 VQESVQKVPFLGDLPIIGHLFRSSSSSKKKKNLMIFIKATIIRDGII 618 >gi|239814151|ref|YP_002943061.1| type IV pilus secretin PilQ [Variovorax paradoxus S110] gi|239800728|gb|ACS17795.1| type IV pilus secretin PilQ [Variovorax paradoxus S110] Length = 714 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 41/274 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------------------- 220 ++ L+I QV ++ I E K +G + Sbjct: 438 DLIQKLDIP-VRQVLIEARIVEASDTFGKSLGVRLGGGISRERVASANGNPAYGTFGVMP 496 Query: 221 -------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALER 265 ++ + A G + G F++ S + ALE Sbjct: 497 VTTAAGGVGGATATWTNSNFINLPAGDAGGTGNAPGTFAISLFNSSLSRMLNLEISALEA 556 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + ++ P + A G + Y+ +SS GATS++ + L TP + Sbjct: 557 DGKGKLVSSPRVITADQTKALIEQGEEIPYQQATSS-GATSISFRKAVLKLEVTPQITPE 615 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G I L + +VS+ GVN P+ + T V + +GGT+V+ G+ + + + Sbjct: 616 GNIILTL--DVSKDARGVNTSAGPAINTKHVQTEVLVENGGTVVIGGIFELTETNDESRV 673 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P+L ++P LGALFR +TE+ + TP ++ Sbjct: 674 PVLGEVPYLGALFRKRERVANKTEMLVFITPKMI 707 >gi|326403170|ref|YP_004283251.1| type II secretory pathway protein D [Acidiphilium multivorum AIU301] gi|325050031|dbj|BAJ80369.1| type II secretory pathway protein D [Acidiphilium multivorum AIU301] Length = 758 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 67/277 (24%), Positives = 121/277 (43%), Gaps = 13/277 (4%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + N+S + ++ L+I +V + TIAEV + + G Q S G + + Sbjct: 458 ADASENASVEAMLRKLDI-EPLEVEIDATIAEVDLNGALKYGTQFFF--KSGGINAVLST 514 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 F + G + + AL+ T ++ L+ P L +G++A+ G Sbjct: 515 GTTAALNQSFPGFVLAGHGSDGA-PLAISALQSVTQVQVLSSPQLLVQNGRTANLLVGNL 573 Query: 293 HLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGV 343 Y + +S + T+ V + GV+L TP + S G + L + +VS P + Sbjct: 574 VPYLSQTSQSTLTTGAPVINSVNYQETGVILQITPHISSDGLVALTVSQQVSNVAPSVTT 633 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + P++ R ++V + G TI LAGL+ D++Q+ G+P L +P+LG LF Sbjct: 634 QGLNSPTFSERAVSSSVVVHDGQTIGLAGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDN 693 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 +R E+ + TP +V D ++ + A Sbjct: 694 SRARQELLVLITPHVVHDATDAAALTSDLEQALPNAA 730 >gi|188578583|ref|YP_001915512.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523035|gb|ACD60980.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae PXO99A] Length = 766 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 55/335 (16%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + + +++ D V + AV + T L +S + SS + V+ L++ Sbjct: 429 GNGAVTLDVAGDKVGVS-----------AVAETNTLLVRSTPQAW--SSIRDVIEKLDVM 475 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------SSGPSKSFA 231 QV ++ +AEV Q G S +S ++ Sbjct: 476 -PMQVHIEAQVAEVNLTGKLQYGVNWYFENSVNAAADSAANSTGIGAGAGLASAAGRNIW 534 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D GK E G + + +++HAL+ T +R L P++ + A+ G Sbjct: 535 GDIAGKITGEKG---AQWTFLGKNAASIIHALDEVTNVRLLQTPSVFVRNNAEATLNVGS 591 Query: 292 QHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------ 339 + + S +TG +SV D GV+L P V G + L I EVS P Sbjct: 592 RIAINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSPGDRPAA 651 Query: 340 ----VIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VNA R+ T + SG TI+LAGL+ D GIP LSK+P++ Sbjct: 652 CTSATATVNAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDGSNGIPFLSKLPVV 711 Query: 395 GALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 GALF + N E+ + TP +V+ P R+L+ Sbjct: 712 GALFGSKSRNSARREVIVLITPSIVRNPQEARNLT 746 >gi|302036706|ref|YP_003797028.1| putative type IV pili biogenesis protein PilQ [Candidatus Nitrospira defluvii] gi|300604770|emb|CBK41102.1| putative Type IV pili biogenesis protein PilQ [Candidatus Nitrospira defluvii] Length = 664 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 63/257 (24%), Positives = 102/257 (39%), Gaps = 30/257 (11%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADFGGKFVSEGGDFSVK- 248 QV ++ I + + +G Q I SS + +F G F ++ DF + Sbjct: 411 PQVQIEARIVQADTTYTRSLGVQWGIQNVNQLGSSSGTSAFKTGTTGAFGAQVSDFLINL 470 Query: 249 ----------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G D + L A E + +A P +T + + A G Sbjct: 471 PANPGLPSVPGAGFSIGKTDGAMLDVRLSAGELLGLTKVIAAPKITTLDKRDAKIAQGES 530 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG------RIGLRIQTEVSEPVIGVNAG 346 ++T S T T D + L+ TP + S +I ++++ + N Sbjct: 531 IPFQTTS--LQGTQTTFVDANLELNVTPQITSRDPKEIGKQILMKVRATRNAVGARSNPA 588 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 PS R+A T V + G T+V+ G+ D GIP LS+IP+LG LF+N N Sbjct: 589 G-PSIDRREATTQVLVRDGETMVIGGVFVDTQSNNVAGIPYLSRIPVLGWLFKNKTENVS 647 Query: 407 ETEIFIAATPFLVKPVA 423 + E+ I TP +V+ Sbjct: 648 KQELLIFLTPTIVRSTT 664 >gi|332529515|ref|ZP_08405473.1| type II and III secretion system protein [Hylemonella gracilis ATCC 19624] gi|332041035|gb|EGI77403.1| type II and III secretion system protein [Hylemonella gracilis ATCC 19624] Length = 509 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 105/262 (40%), Gaps = 28/262 (10%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----------------------QH 217 + + ++ +++ QV ++ I E + +G + Sbjct: 242 AVRALIAKIDVP-VRQVLIEARIVEASDTFSRSLGARLGGAGGRSPSGGAGAGAGFGGSY 300 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVK--GVLDRFSFETVLHALERATAIRTLAEP 275 S T + +G G G F+V G + ALE + ++ P Sbjct: 301 SATAAGAGGGSFVNLPSPGLGGQPAGVFAVSIFGESAARFLNLEISALEADGKGKVVSSP 360 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + A G + Y+ VS+S+GATS++ ++L TP + G + L + + Sbjct: 361 RVVTADKVKALIEQGTELPYQ-VSTSSGATSISFRKANLMLEVTPQITPEGNVILEV--D 417 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 VS+ +G + + + T V + +GGT+V+ G+ + ++ IP L +P LG Sbjct: 418 VSKDSVGQDTQAGFAIDTKHVKTQVLVENGGTVVIGGIYTQEERETVTKIPFLGDLPGLG 477 Query: 396 ALFRNSRFNREETEIFIAATPF 417 ALFR E+ E+ + TP Sbjct: 478 ALFRAKETRSEKREMLVFITPK 499 >gi|269960458|ref|ZP_06174830.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834535|gb|EEZ88622.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 226 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 12/191 (6%) Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LAEP+LTA+SG A F +GG+ + ++ +YGV L F P +LS RI L Sbjct: 1 MLAEPSLTALSGTQAEFVAGGEFPIPVP--NDDGITIDYKEYGVQLDFVPYILSDKRINL 58 Query: 331 RIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 ++ VSE +P R A TT+EL G TI +AGLL ++ + Sbjct: 59 KMNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLSENARN 118 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 + +GIP S +P+LG LF++ F ETE+ I TP L P+ R ++ P D + +D Sbjct: 119 VADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGFVSPNDV 178 Query: 441 KAFFFNRVNKI 451 + + + ++ Sbjct: 179 EFYLLGKGAEL 189 >gi|28899478|ref|NP_799083.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus RIMD 2210633] gi|153839930|ref|ZP_01992597.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ3810] gi|28807714|dbj|BAC60967.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus RIMD 2210633] gi|149746550|gb|EDM57538.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ3810] gi|328471385|gb|EGF42280.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus 10329] Length = 547 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 66/281 (23%), Positives = 113/281 (40%), Gaps = 32/281 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + + + QV L+ I EV Q G S +S G S S + + Sbjct: 259 REFLGVSQERMQRQVILEAKILEVTLSDGYQQGINWSNLSASIGNSGSIIVNRPASALPP 318 Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 GG +V + +FE VL+ + + L+ P +TA + Q + G Sbjct: 319 LDAIGTLLGGQTNVT--ISDGNFEAVLNFMSTQGDLNVLSSPRITAANNQKSVIKVGTDQ 376 Query: 294 LYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPV 340 + T SS +T G+ L TP + + G + L + EV+E V Sbjct: 377 YFVTELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEV 436 Query: 341 IGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 +N G + +R++D+ + G +V+ GL+K + +P L +P Sbjct: 437 KQLNLGGDFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNVEQVSKVPFLGDVP 496 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 LG LFRN+ ++TE+ I P +V ++L R D Sbjct: 497 ALGHLFRNTSNVTQKTELVILLKPTVVGVNSWQKELERSRD 537 >gi|209694066|ref|YP_002261994.1| type IV pilus, mannose-sensitive hemagglutinin D (MSHD) [Aliivibrio salmonicida LFI1238] gi|208008017|emb|CAQ78154.1| type IV pilus, mannose-sensitive hemagglutinin D (MSHD) [Aliivibrio salmonicida LFI1238] Length = 546 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 62/271 (22%), Positives = 98/271 (36%), Gaps = 31/271 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + QV L+ + EV Q G S ++ G + G G L Sbjct: 267 QRQVILEAKLLEVTLSDGYQQGINWSNLTAAVGGTDIVFGQVPGTTAGVLPGMDAIGSLL 326 Query: 252 --------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 +F VL ++ + L+ P +TA + Q A G + T SS Sbjct: 327 GGQTNITVSDGNFSAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGRDEYFVTEVSSVT 386 Query: 304 AT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIG 342 ++T G+ L TP + G + L + V + V G Sbjct: 387 GNGDNSNASPEVTLTPFFSGISLDVTPQIDDKGNVMLHVHPSVIDVETETKIIDLGDVGG 446 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 V + +R++D+ + SG +V+ GL+K +P L IP+LG LFRN Sbjct: 447 VLELPLAKSSIRESDSVIRAKSGDVVVIGGLMKSQTVDQVSKVPFLGDIPVLGHLFRNVS 506 Query: 403 FNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 +TE+ I P +V +L R D Sbjct: 507 QLTTKTELVILLKPTVVGVDTWQEELERSRD 537 >gi|238019550|ref|ZP_04599976.1| hypothetical protein VEIDISOL_01419 [Veillonella dispar ATCC 17748] gi|237864249|gb|EEP65539.1| hypothetical protein VEIDISOL_01419 [Veillonella dispar ATCC 17748] Length = 421 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 124/278 (44%), Gaps = 15/278 (5%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L ++ T+ + + LSE + ++N ++ QV L+ TI + Sbjct: 154 LSNIMGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLINAVD-KEPKQVQLEATIIAME 212 Query: 207 RDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + K+ GF+ S TG + S+ A GK G +F + L + Sbjct: 213 QSYAKEQGFRWSWLSLTGHGEDKTNSYGAVTFGKTP--------GGEAYKFFVKPELSLM 264 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPT 321 E + +A+P++ A++G++A G + S G S + G+ L++TP Sbjct: 265 ESSGKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPI 324 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + G + +I EVS P++ V+ R+A T V L G +V+ GL+ + Q Sbjct: 325 ITADGGVDAKIHAEVSTPIM-VSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQ 383 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + IP+L IP+LG LFR+SR ++ E+ I +V Sbjct: 384 IQKIPILGDIPLLGKLFRHSRKTKDSIEMLILVRANVV 421 >gi|95931255|ref|ZP_01313974.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] gi|95132691|gb|EAT14371.1| type II and III secretion system protein [Desulfuromonas acetoxidans DSM 684] Length = 665 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 67/344 (19%), Positives = 121/344 (35%), Gaps = 38/344 (11%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 D L TL ++ S G + ++ + N Sbjct: 293 NADAEELSKTLNEILSGIKKPATSSSAAAGGKGTIPAAAIQTNVTVSADKPTNALVINAT 352 Query: 177 ANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFA 231 K ++ L+I QV ++ I E+ D + +G Q G+ + S Sbjct: 353 PEDYVIIKDIIKQLDIR-RKQVYVEALIMELSMDATEALGSQLQGAFEVGNEGIVNLSSN 411 Query: 232 ADFGG------KFVSEGGDFSVKGVLDRF----------------SFETVLHALERATAI 269 + GG ++ + + G + +F ++ + T + Sbjct: 412 SAPGGILSDPESLLTTSVNGLLAGGFSKLIGVDTDGDGVDDSQVTAFSALIKLSKDDTNV 471 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTV--SSSTGA------TSVTTHDYGVVLHFTPT 321 L+ P L + A G T + STG+ SV D + L FTP Sbjct: 472 NILSAPRLLTSDNEEAEIVVGRNVPIITSRLTDSTGSDSLAQSVSVERKDVALTLRFTPQ 531 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 + + L + E ++ V + P++ RK TV G T+VL GL+ + Q Sbjct: 532 ITEGELVRLNVYQETTDLTDSVGDVNSVGPTFTTRKISNTVLARDGQTVVLGGLISTNQQ 591 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + +PLL IP+LG LF++ +T + + TP ++ + Sbjct: 592 ETISKVPLLGDIPLLGWLFKSKDNKEVKTNLLVFITPTIISDME 635 >gi|146305583|ref|YP_001186048.1| type IV pilus secretin PilQ [Pseudomonas mendocina ymp] gi|145573784|gb|ABP83316.1| type IV pilus secretin PilQ [Pseudomonas mendocina ymp] Length = 706 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 102/286 (35%), Gaps = 36/286 (12%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + Q ++++ L+I QV ++ I E D K +G + + + S Sbjct: 419 QTQERLDELRRIVAQLDIP-VRQVMIEARIVEANVDYDKALGVRWGGSVRNGAWDVSGKD 477 Query: 233 DFGG-----------------------------KFVSEGGDFSVKGVL-----DRFSFET 258 G FV G S G+ + Sbjct: 478 GVQGFDKDTGVRAPFVGTDTIGRTTLEDGLARLPFVDMGVQNSTSGIAIGYLGSNIVLDL 537 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 L A+E+ +++P + ++A G + Y+ SSS ATS + + + L Sbjct: 538 QLSAMEKTGNGEIVSQPKVVTSDKETAKILKGQEVPYQEASSSG-ATSTSFKEAALALEV 596 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 TP + RI + ++ P +P + + V + G TIV+ G+ + Sbjct: 597 TPQITPDNRIIMEVKVTKDAPDFANLVNGVPPLNKNEVNAKVLVNDGETIVIGGVFSNTQ 656 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 E +P L +P LG +FR + E+ + TP ++ A+ Sbjct: 657 TNAVEKVPFLGDLPFLGRVFRRDIVRDNKAELLVFITPRIMNNQAI 702 >gi|326572695|gb|EGE22682.1| general secretion pathway protein D [Moraxella catarrhalis BC8] Length = 428 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 118/280 (42%), Gaps = 18/280 (6%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 +I DS ++S + N + + +++ L++ + Q+ ++ I E+ K Sbjct: 122 SISDSVAVADISSNAVIVRNDNAFDFA---QIIKSLDV-NKKQILIQAVILELSDTDTKN 177 Query: 213 IGFQHSITGSSS------GPSKSFAADFGGK--FVSEGGDFSVKGVLDRFSFETVLHALE 264 +G Q + + P+ S G G F K + VLHALE Sbjct: 178 LGVQWAAGNGAGYGVVNFNPAVSLTNALAGNKSLSVLGALFGYKKNDGNKFYGAVLHALE 237 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGVVLHFTP 320 + L+ P++ ++ ++AS G T S +++ D G+ L TP Sbjct: 238 HTSNANLLSMPSVLSLDNEAASILIGQNIPVITGSQLDRNGEPFKTISRLDVGISLKVTP 297 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + RI +++ EVS V N G + DT + +G IVL GL++D+ Sbjct: 298 QITDDNRINMKVYQEVSNVVNTTNDGVV--TNKSVIDTNILSGNGEVIVLGGLMRDETTT 355 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +G+P LSK+P LG F+ + +++ + I P ++ Sbjct: 356 TVQGVPKLSKLPFLGKAFKADLDSAKKSNLVIFLQPTIID 395 >gi|242281104|ref|YP_002993233.1| general secretion pathway protein D [Desulfovibrio salexigens DSM 2638] gi|242123998|gb|ACS81694.1| general secretion pathway protein D [Desulfovibrio salexigens DSM 2638] Length = 671 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 104/250 (41%), Gaps = 23/250 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------ADFGGKFVSEGG 243 +DQV ++ + E D K+ G + G + + + + G Sbjct: 371 QDQVYIEALVLETTLDHAKEFGVEWQGGIDLGGSVATLGYTKAKDSNLSAYASNPSNVPG 430 Query: 244 DFSVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 +S+ + D S +++ + AT ++ P + + A G Y Sbjct: 431 GYSMGVLGDTISYAGRSFPTIGALVNFTKSATDFNLISAPQIMTLDNAEAEIFVGQNRPY 490 Query: 296 KTVSSSTGA----TSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNAGDMPS 350 KT SST ++ D G+ L TP + G + L++ + + ++P Sbjct: 491 KTGQSSTSGDAVVSTYEYKDVGIKLKITPRINREDGLVKLKVYQTYNTVSE-ASTTELPI 549 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 RK DTTV L G T+V+ GL++ D + + G+P LS +P+LG LF+ + + + + Sbjct: 550 TNDRKTDTTVLLADGSTMVIGGLIRADHTRTEAGVPYLSDLPLLGWLFKTTSNSGNKNTL 609 Query: 411 FIAATPFLVK 420 + + +++ Sbjct: 610 MVFLSARIIQ 619 >gi|325917654|ref|ZP_08179848.1| type IV pilus secretin PilQ/competence protein [Xanthomonas vesicatoria ATCC 35937] gi|325536118|gb|EGD07920.1| type IV pilus secretin PilQ/competence protein [Xanthomonas vesicatoria ATCC 35937] Length = 616 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 105/272 (38%), Gaps = 34/272 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 +++++ ++ DQV ++ I + +G + I G + Sbjct: 340 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIAGRQQYGGNTGVISGSTTNNVS 398 Query: 230 --------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 F G + G + + F+ + L A++ ++ P Sbjct: 399 ILNNGIHNVPGGLNFNLPAGTFTTNTAGAIAYTLLGRNFALDMELSAMQEEGRGEVVSNP 458 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + + G + Y T+S + +V + + L TPT+ + R+ L Sbjct: 459 RIVTSNQREGVIKQGREIGYVTISGGGASGQSQANVQFKEVLLELKVTPTITNDNRVFLN 518 Query: 332 IQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + + E +N G +P R+ +T V + G T+V+ G+ + ++ +P L Sbjct: 519 MNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESIAKVPFL 578 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP LG LF+ ++E+ E+ + TP +++ Sbjct: 579 GDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 610 >gi|171318673|ref|ZP_02907818.1| type IV pilus secretin PilQ [Burkholderia ambifaria MEX-5] gi|171096140|gb|EDT41064.1| type IV pilus secretin PilQ [Burkholderia ambifaria MEX-5] Length = 553 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 17/250 (6%) Query: 183 KVMNLLNIAGEDQVTLKVTIAE----VRRDILKQIGFQHSITGSSSG---------PSKS 229 +++ ++ QV ++ I E R++ ++ + ++ + Sbjct: 275 GLIDAIDRP-SRQVRIEARIVEGEQGFSRNLGARVALRAQGRAPAADGAASASDTRNALD 333 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 AA G F + F++ + L ALE + ++ P + A Sbjct: 334 LAARPLGGFEAATAGFTLFAAPLSRVLDVELSALEAQGRGQIISSPRVVTADRVKAIVEQ 393 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 G + Y+ G + V + L P + GR+ L + +V++ IG P Sbjct: 394 GSELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGP 450 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + T VE+ +GGT+ + G+ + + +PLL KIP+LGALFR+ + +E Sbjct: 451 AIHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSE 510 Query: 410 IFIAATPFLV 419 + + TP +V Sbjct: 511 LVVFITPTVV 520 >gi|50086334|ref|YP_047844.1| putative outer membrane protein (ComQ) [Acinetobacter sp. ADP1] gi|12642803|gb|AAK00351.1|AF329876_7 putative outer membrane protein ComQ [Acinetobacter sp. BD413] gi|49532310|emb|CAG70022.1| putative outer membrane protein (ComQ) [Acinetobacter sp. ADP1] Length = 723 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 53/325 (16%), Positives = 115/325 (35%), Gaps = 38/325 (11%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 + + VE + D+V G + + + + + T + + +K+++LL+I Sbjct: 405 NGSATVEPLGDSV---GTLLSPRGTISLDPRTNTLIINDTSQKIDQ--IRKMIDLLDIP- 458 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---------------------- 230 QV ++ I K++G + I + + Sbjct: 459 VKQVMIEARIVRATTSFSKEMGVKWGILSQGINQNSNLLVGGSETTLWNLRNPDSNGTYT 518 Query: 231 -------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 D G L F + L AL+ ++ P + + Q Sbjct: 519 IERPDNLNVDLGVTTTGASSIAFGLISLSDFMLDLELSALQADGYGEVISTPKVMSADKQ 578 Query: 284 SASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A +G + Y++ ++S ++ + + + L TP + G+I + + Sbjct: 579 KAKVATGVEVPYQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMELNIANDSINS 638 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G+ +T V + +G T+VL G+ + +P L +P +G LF+ + Sbjct: 639 YAQNGEA-ILNKNTINTNVLVNNGETVVLGGVFEQTTNNAVTKVPFLGDLPYVGRLFKKT 697 Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426 + + E+ I TP +V + + Sbjct: 698 AKSEAKNELLIFVTPRIVNDTIVGN 722 >gi|308274907|emb|CBX31506.1| hypothetical protein N47_E50180 [uncultured Desulfobacterium sp.] Length = 718 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 64/341 (18%), Positives = 120/341 (35%), Gaps = 43/341 (12%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH--GMVRTIQDSQRAVELSETFLSQSGRN 174 D L L+ + + + +V G+ T + A+ + T Sbjct: 284 NADAVELAKVLQDLVKAGQSKQPAAAMSVFETAGGIAITADKASNALVVVATPADYQNLQ 343 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------PSK 228 Q K+ QV ++ IAEV D L ++G + + +G Sbjct: 344 QIIKKLDKR---------RKQVFVEAMIAEVSIDKLLELGSKWRAAVTRNGEPIFVGGVG 394 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFS-----------------FETVLHALERATAIRT 271 + A +S ++ G+ + F+ + + A+ Sbjct: 395 TVDAATVNSILSGMTGLTLGGMSNYFTVPQTFVAGGTSDIKVPGITALFSMSDFKDAVNV 454 Query: 272 LAEPTLTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 L+ P + A G ++ST TS+ D G++L P + Sbjct: 455 LSTPQILTSDNMEAEILVGENIPLILNRERDVTTTSTVLTSIERKDVGILLKIKPQINEG 514 Query: 326 GRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + L I E+S G P+ R T+V + T+V+ GL+++ ++ Sbjct: 515 EYVKLDIYQEISAQKAGSENVITSIGPTMTKRSTKTSVAVKDKQTVVIGGLMQERDEESI 574 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 IPLL IP LG LF+ +R +T + + TP+++ + Sbjct: 575 TKIPLLGDIPGLGWLFKYRSISRAKTNLLVFLTPYIINDSS 615 >gi|254497667|ref|ZP_05110447.1| type IV pilus (Tfp) assembly protein PilQ [Legionella drancourtii LLAP12] gi|254353104|gb|EET11859.1| type IV pilus (Tfp) assembly protein PilQ [Legionella drancourtii LLAP12] Length = 652 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 103/251 (41%), Gaps = 28/251 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------GSSSGPSK------- 228 + ++ L++ QV ++ I EV +D + +G + ++ G+ G ++ Sbjct: 405 RALIKQLDVP-VKQVLIEARIVEVSKDFARDLGIRWGVSKPNHLSGTLQGANQMEQGTAP 463 Query: 229 ------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 A ++ + D + L ALE ++ P Sbjct: 464 ANVNPYTQRLNLDLVAAPATGMTPASVGIALAKLGDNILLDLELSALESEGRAELISSPR 523 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 L + Q A SG + Y+ S+S+GAT+V + L TP + +I + ++ Sbjct: 524 LITTNQQPAVIDSGQEIPYQE-STSSGATAVAFKKAVLSLRVTPQITPDSKILMDLKINQ 582 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +P+ ++ T V + +G TIVL G+ + D + IP L ++P++G Sbjct: 583 DTASTQL-FNGVPAILTKEIQTNVLVSNGQTIVLGGIYQQDKSRTITRIPFLGQLPVVGN 641 Query: 397 LFRNSRFNREE 407 LFRN++ + Sbjct: 642 LFRNTQIVINK 652 >gi|297180471|gb|ADI16685.1| type II secretory pathway, component puld [uncultured gamma proteobacterium HF0010_05D02] Length = 666 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 120/313 (38%), Gaps = 38/313 (12%) Query: 148 HGMVRTIQDSQRAVELSETFLS-QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G R ++ +E E S + ++ + V+ L+I QV ++ I E+ Sbjct: 299 SGRTRAANAAKSTIEADEGTNSLIITADTDEMAALEAVIARLDIR-RAQVLVEAIIVEID 357 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAA--------------------------DFGGKFVS 240 +++G Q S + + D G Sbjct: 358 VTEGRELGLQWLFANDSGLYGSNISPARQGSNAAIAQAILPEDAASTEIGVRDLAGALSQ 417 Query: 241 EGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G GV+D + T+L+ LE+ L+ P+L + + A T G Q + T S Sbjct: 418 VPGTTFGWGVVDENLTMTTILNTLEKQGNTNILSTPSLLTLDNEEAFITVGQQVPFVTGS 477 Query: 300 SSTGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + ++ + GV L TP + + + I EVS + Sbjct: 478 YTNTGAANGVANPFQTIQRENVGVTLQVTPQINEGDSVVMDIVQEVSSISQQALSASDVI 537 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 RK +T V G +VL GL+KDDIQ ++G+PLLS IP++G LFRN + ++ + Sbjct: 538 TNERKIETKVLAKDGDIVVLGGLVKDDIQDSQQGVPLLSGIPVVGRLFRNDVVSVTKSNL 597 Query: 411 FIAATPFLVKPVA 423 + +++ Sbjct: 598 LVFIRSTIIRDDD 610 >gi|149174476|ref|ZP_01853102.1| Type IV pilin multimeric outer membrane protein [Planctomyces maris DSM 8797] gi|148846586|gb|EDL60923.1| Type IV pilin multimeric outer membrane protein [Planctomyces maris DSM 8797] Length = 799 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 63/265 (23%), Positives = 112/265 (42%), Gaps = 27/265 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++ ++I QV ++ I V + + G ++ G G +K+ D G ++ Sbjct: 435 DRLLEKMDIP-PMQVVIEAMILSVALNDDMKFGVNFAMLG---GNNKNLVVDGNGNTLNN 490 Query: 242 G---------------GDF--SVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAIS 281 G F V G+ F + ALE T +A P L A++ Sbjct: 491 ASGFPGSGSSSIVPPTGQFIADVAGLKYGFLHGDISGFIEALEDVTETNLIASPQLRALN 550 Query: 282 GQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 Q A G + Y TV+ + + +V D G+VL+ P + G+I + + E S Sbjct: 551 KQKAELIIGDRISYSTVTQNGNTSIQNVNFLDSGIVLNLRPFITPDGQIRMEVHPERSSA 610 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 I + +P R + T V + G T+V+ GL+++ + +P L +P++G FR Sbjct: 611 TINPSTN-LPDLRTTEVTTNVMVRDGHTVVIGGLIEERTSDTRNQVPFLGALPVIGNAFR 669 Query: 400 NSRFNREETEIFIAATPFLVKPVAM 424 R TE+ + TP +V+ A Sbjct: 670 QQREITNRTELIVLITPRIVRAEAA 694 >gi|221213453|ref|ZP_03586428.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD1] gi|221166905|gb|EED99376.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD1] Length = 571 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 16/242 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------SGPSKSFAADFGGK 237 QV ++ I E + + +G + ++ + + AA Sbjct: 300 RPSRQVRIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAAASPAGARTALDLAARPLAG 359 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F + F++ + L ALE + ++ P + A G + Y+ Sbjct: 360 FDAATAGFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ- 418 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G T V + L P + GR+ L + +V++ +G P+ + Sbjct: 419 AKVGNGVTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQ 476 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T VE+ GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP Sbjct: 477 TRVEVDDGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPT 536 Query: 418 LV 419 +V Sbjct: 537 IV 538 >gi|254229258|ref|ZP_04922676.1| pilus (msha type) biogenesis protein mshl, putative [Vibrio sp. Ex25] gi|151938182|gb|EDN57022.1| pilus (msha type) biogenesis protein mshl, putative [Vibrio sp. Ex25] Length = 547 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 113/281 (40%), Gaps = 32/281 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + + + QV L+ I EV + Q G S +S G S S + + Sbjct: 259 REFLGVSQERMQRQVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSVVVNRPASALPP 318 Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 GG +V + +F VL + + L+ P +TA + Q + G Sbjct: 319 LDAIGTLLGGQTNVT--ISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDE 376 Query: 294 LYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPV 340 + T SS +T G+ L TP + + G + L + EVSE V Sbjct: 377 YFVTELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVSEEV 436 Query: 341 IGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 +N G + +R++D+ + G +V+ GL+K ++L +P L +P Sbjct: 437 KKLNLGGEFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVP 496 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 LG LFRN E+TE+ I P +V ++L R D Sbjct: 497 ALGHLFRNVNNVTEKTELVILLKPTVVGVNSWQKELERSRD 537 >gi|308094739|ref|ZP_05891643.2| msha biogenesis protein mshl [Vibrio parahaemolyticus AN-5034] gi|308095427|ref|ZP_05905786.2| msha biogenesis protein mshl [Vibrio parahaemolyticus Peru-466] gi|308125606|ref|ZP_05776206.2| msha biogenesis protein mshl [Vibrio parahaemolyticus K5030] gi|308126551|ref|ZP_05910862.2| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ4037] gi|308087223|gb|EFO36918.1| msha biogenesis protein mshl [Vibrio parahaemolyticus Peru-466] gi|308093091|gb|EFO42786.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AN-5034] gi|308109580|gb|EFO47120.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ4037] gi|308111201|gb|EFO48741.1| msha biogenesis protein mshl [Vibrio parahaemolyticus K5030] Length = 530 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 66/281 (23%), Positives = 113/281 (40%), Gaps = 32/281 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + + + QV L+ I EV Q G S +S G S S + + Sbjct: 242 REFLGVSQERMQRQVILEAKILEVTLSDGYQQGINWSNLSASIGNSGSIIVNRPASALPP 301 Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 GG +V + +FE VL+ + + L+ P +TA + Q + G Sbjct: 302 LDAIGTLLGGQTNVT--ISDGNFEAVLNFMSTQGDLNVLSSPRITAANNQKSVIKVGTDQ 359 Query: 294 LYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPV 340 + T SS +T G+ L TP + + G + L + EV+E V Sbjct: 360 YFVTELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEV 419 Query: 341 IGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 +N G + +R++D+ + G +V+ GL+K + +P L +P Sbjct: 420 KQLNLGGDFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNVEQVSKVPFLGDVP 479 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 LG LFRN+ ++TE+ I P +V ++L R D Sbjct: 480 ALGHLFRNTSNVTQKTELVILLKPTVVGVNSWQKELERSRD 520 >gi|319791917|ref|YP_004153557.1| type IV pilus secretin pilq [Variovorax paradoxus EPS] gi|315594380|gb|ADU35446.1| type IV pilus secretin PilQ [Variovorax paradoxus EPS] Length = 713 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 105/274 (38%), Gaps = 41/274 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------------------- 220 +++ L+I QV ++ I E K +G + Sbjct: 437 ELIQKLDIP-VRQVLIEARIVEASDTFGKSLGVRLGGGISRERVASANGNPAYGTLGVMP 495 Query: 221 -------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALER 265 ++ + A G + G F++ S + ALE Sbjct: 496 ATTNGGGVGGAAATWTNSNFINLPAGDAGGTGNTPGAFAISLFNSSLSRMLNLEISALEA 555 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + ++ P + A G + Y+ +SS GATS++ + L TP + Sbjct: 556 DGKGKLVSSPRVITADQTKALIEQGEEIPYQQATSS-GATSISFRKAVLKLEVTPQITPE 614 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G I L + +VS+ GVN P+ + T V + +GGT+V+ G+ + + + Sbjct: 615 GNIILTL--DVSKDARGVNTSAGPAINTKHVQTEVLVENGGTVVIGGIFELTETNDESRV 672 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P+L +IP +GALFR +TE+ + TP ++ Sbjct: 673 PVLGEIPYMGALFRKRERVANKTEMLVFITPKMI 706 >gi|21244106|ref|NP_643688.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str. 306] gi|21109733|gb|AAM38224.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str. 306] Length = 633 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 108/272 (39%), Gaps = 34/272 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------SSGPSKS--- 229 +++++ ++ DQV ++ I + +G + I G SG S + Sbjct: 357 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIAGRRQYGDNTAVISGSSTNNVS 415 Query: 230 --------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 F G + G + + F+ + L A++ ++ P Sbjct: 416 VINDGLHNVPSGLNFNLPAGTFTTNTAGSIAYTLLGRNFALDMELSAMQEEGRGEVVSNP 475 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + + G + Y T+S +V + + L TPT+ + R+ L Sbjct: 476 RIVTANQREGVIKQGREIGYVTISGGGTGGQSQANVQFKEVLLELKVTPTITNDNRVFLN 535 Query: 332 IQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + + E +N G +P R+ +T V + G T+V+ G+ + + ++ +P L Sbjct: 536 MNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFNDRESVAKVPFL 595 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP LG LF+ ++E+ E+ + TP +++ Sbjct: 596 GDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 627 >gi|94267441|ref|ZP_01290880.1| type II and III secretion system protein:Secretin/TonB, short-like [delta proteobacterium MLMS-1] gi|93452009|gb|EAT02711.1| type II and III secretion system protein:Secretin/TonB, short-like [delta proteobacterium MLMS-1] Length = 555 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 71/323 (21%), Positives = 125/323 (38%), Gaps = 49/323 (15%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTI 202 ++ G R +D +A ++ S + ++V L+ E QV L+ I Sbjct: 206 MIVGTDRGREDGSQARQVIVNSKSGLVMVRALPGELREVETFLDALLENALRQVMLEAKI 265 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----GDFSVKGV------- 250 EV D Q G +S F GG + +G G+ GV Sbjct: 266 IEVELDEAFQSGINWGQLATSGSGEWQFGQIGGGTVLDDGVSAIAGNTGNIGVDNFDPID 325 Query: 251 --------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 DR +F + L+ + L+ P + + Q A G + Sbjct: 326 GTATSAFGGVFTMAADRSNFHAFIELLKTQGDVHVLSSPRVATTNNQKALIKVGNDEYFV 385 Query: 297 TVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 T S + T+ +T G+ L TPT+ + L I+ VS+ + Sbjct: 386 TDVSFSTRTTGTDDTIYPDLELTPFFSGIALDVTPTITDGNEVILHIRPSVSQVRDQTKS 445 Query: 346 GDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + R+R++D+ V SG I++ GL++D ++ + G+P L +P++G Sbjct: 446 FTVAGQTQSLPLALSRMRESDSIVRARSGQVIIIGGLMEDSWREQRAGLPGLGDLPLVGN 505 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 LFR R+++ +TE+ I P +V Sbjct: 506 LFRQQRWSQRKTELVILLRPVVV 528 >gi|294012342|ref|YP_003545802.1| type II secretory pathway component PulD [Sphingobium japonicum UT26S] gi|292675672|dbj|BAI97190.1| type II secretory pathway component PulD [Sphingobium japonicum UT26S] Length = 726 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 71/346 (20%), Positives = 135/346 (39%), Gaps = 23/346 (6%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 I ++R + ++ +++ + V++ ++ I D+ + + + Sbjct: 334 NAIIVAANSDVQRMLGETIRQIDTRREQVLVEAIIVEISDAAAKKLGVQFLIGSTKTGFA 393 Query: 177 ANSSSKKVMNLLNIAGE-DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 A + S N+L +AG L T V + + G + + A D Sbjct: 394 ATNYSNASPNILTLAGAIAADRLGETTTTVVAPDGTRTETRTRENGDLANTLQQAAVDSL 453 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + G + F +++A++ T L+ P++ + Q AS G Q Sbjct: 454 MN-ATGGFGGVATSLGRNGIFGAIINAVKSDTDSNILSTPSVMTLDNQKASILVGQQVPV 512 Query: 296 KTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP- 349 T + +V D G+ L P + + G I L ++ EVS V+ + Sbjct: 513 TTGEALSQNFDNQFRTVQRQDVGIKLEVKPQINTGGAIKLFLKQEVSSVAGPVSNNNSDL 572 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R+ +TTV + G + L GLL D+ ++ E IPLLS IP LG LF++ +R +T Sbjct: 573 IINKREIETTVTVDDGEILALGGLLDDNERKTIERIPLLSDIPGLGELFKSRSKSRTKTN 632 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 + + P +++ ++DA+ R I G + Sbjct: 633 LMVFIRPTILR---------------SKEDAQKLTQQRYGYIRGMQ 663 >gi|114798909|ref|YP_761208.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444] gi|114739083|gb|ABI77208.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444] Length = 694 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 12/235 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV ++ TI EV +G Q + S +F G S SV + Sbjct: 438 KRQVLIEATIVEVSLTDGTSLGVQWDLVQDRL--SATFTDTGSGDLTSLFPGVSVSYI-- 493 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------T 305 V++AL + + ++ P + ++ ++A G Q T S+ + + Sbjct: 494 NTDIAAVINALAATSDVEIVSSPRMLVLNNETARLQVGDQVPIITQSAVSVSDPGAPVVN 553 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPS 364 S T D GV+L TP + + G + + I EVS + D P+ R + + +P Sbjct: 554 STTYRDTGVILTVTPRIRAGGMVEVDISQEVSGVSETTTSSIDSPTISQRSIQSVLAVPD 613 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T VL GL+ + GIP+L P+LGA FR++ + TE+ + P +V Sbjct: 614 GSTAVLGGLMSSTRSYSRTGIPILKDTPVLGAAFRSTNQSERRTELIVLIEPTVV 668 >gi|291286428|ref|YP_003503244.1| general secretion pathway protein D [Denitrovibrio acetiphilus DSM 12809] gi|290883588|gb|ADD67288.1| general secretion pathway protein D [Denitrovibrio acetiphilus DSM 12809] Length = 616 Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats. Identities = 66/338 (19%), Positives = 122/338 (36%), Gaps = 36/338 (10%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKV 200 L G V ++A + T + N S + + + +QV ++ Sbjct: 278 LTG-VENEDKGKKASNSTSTVAFDAATNSIIVFGSPDLYSKVEGLIEKLDRPREQVYVEA 336 Query: 201 TIAEVRRDILKQIGFQHSITGSSS------------------------GPSKSFAADFGG 236 I E + G + + + G S +F A G Sbjct: 337 LIIETSIENGSDFGVEWQVGAGNDSQAGTIGYLGSDGALTSFQSSVLDGDSPNFGALSSG 396 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + GD + + + + ++ A+ I L+ P + + + A G + Sbjct: 397 FNLGILGDIVTYEGVSFPTLGILANFVKTASGINILSNPQILTLDNEEAEIFVGENRPFL 456 Query: 297 TV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 T S++ S D GV L+ P + S I L+I+ EV + P Sbjct: 457 TSTKYDSNNNPVQSYDYRDVGVKLNIVPQISSNDTITLKIEQEVKKVSGATADVVAPVTL 516 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R T V+L G +V++GLLKDD + +P LS IP++G LF+N + E+T + + Sbjct: 517 TRSTKTKVKLKDGAIMVISGLLKDDSETYNSSVPWLSSIPVIGWLFKNKNSSSEKTNMMV 576 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 + +++ + + K N++ K Sbjct: 577 FISTSIIR-TQEDAKKLTEKKQNESSTFKEEIDNKIQK 613 >gi|163802893|ref|ZP_02196781.1| MSHA biogenesis protein MshL [Vibrio sp. AND4] gi|159173300|gb|EDP58126.1| MSHA biogenesis protein MshL [Vibrio sp. AND4] Length = 531 Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats. Identities = 61/278 (21%), Positives = 106/278 (38%), Gaps = 27/278 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + + + QV L+ I EV Q G S +S G S S D + Sbjct: 244 REFLGVSQERMQRQVILEAKILEVTLSDGYQQGIDWSNMSASIGNSGSIVVDRSPLSLPL 303 Query: 242 GGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 ++ G +F+ V++ + + L+ P +TA + Q + G + Sbjct: 304 DAIGTLLGGQTNVTFSDGNFKAVMNFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFV 363 Query: 297 TVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--- 343 T SS +T G+ L TP + G + L + V E + Sbjct: 364 TELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEIKKL 423 Query: 344 ------NAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 N +P +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 424 NLGGEFNNVQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALG 483 Query: 396 ALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 LFRN ++TE+ I P +V ++L R D Sbjct: 484 NLFRNINNVTQKTELVILLKPTVVGVNTWQKELERSRD 521 >gi|289547821|ref|YP_003472809.1| type II and III secretion system protein [Thermocrinis albus DSM 14484] gi|289181438|gb|ADC88682.1| type II and III secretion system protein [Thermocrinis albus DSM 14484] Length = 575 Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats. Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 33/256 (12%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFG------------- 235 +V+++ I E+R + L+++G ++ SS+ S ++ G Sbjct: 322 PVRVSIEARIVEIREEALRELGINWNMLLSSARLPEAWSGGVGSNIGIGSPPTPGNLFLT 381 Query: 236 ------GKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 G + GG ++ G+++ + + ALER ++LA+PT+ AI+GQ A+ Sbjct: 382 PPYLQPGLSPNPGGILTLTYQKGIINALNL--RISALERVNLAKSLAKPTIVAINGQKAT 439 Query: 287 FTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G Q Y T + G T ++ D + L TP V GRI L + ++ +GV Sbjct: 440 IKQGVQVPYLTAAVGAGGTAVPNIQFKDVVLQLDVTPIVSPDGRILLDL--SLTRDTLGV 497 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P+ ++ T V + +G T+V+ G++ + EGIP ++P+L LF R Sbjct: 498 QTPQGPAINKKEVRTKVIVENGQTLVIGGVIDNQSYTTNEGIPGFVRVPLLKYLFGQERL 557 Query: 404 NREETEIFIAATPFLV 419 N+ +TE+ I TP ++ Sbjct: 558 NKSDTELLIFITPTVL 573 >gi|327480391|gb|AEA83701.1| general secretion pathway protein D [Pseudomonas stutzeri DSM 4166] Length = 644 Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 111/267 (41%), Gaps = 26/267 (9%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + + ++ L+I QV ++ I EV DI +G Q +I + + +FG Sbjct: 330 GTMESIVRQLDIP-RAQVMVEAAIVEVSGDITDALGVQWAI-DARGSTGGAGGVNFGNTG 387 Query: 239 VSEGGDFSVKGV--------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 +S G + + SF ++ AL + L+ P+L + Q Sbjct: 388 ISVGSVLNAINKNEIPNNLPDGAIIGVGTRSFGALITALSSNSKSNLLSTPSLLTLDNQE 447 Query: 285 ASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A G ++T S +T A T++ D GV L TP + + L+I+ E+S Sbjct: 448 AEILVGQNVPFQTGSYTTDAAGANNPFTTIERQDIGVTLKVTPHINEGATLRLQIEQEIS 507 Query: 338 EPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + R +T+ G IVL GL++DD+ + +PLL IP+L Sbjct: 508 SIAPSASLTAQAVDLVTNKRAIKSTILAEDGQVIVLGGLIQDDVTRTNSKVPLLGDIPLL 567 Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421 G LFR+++ + + + P +++ Sbjct: 568 GGLFRSTQETHIKRNLMVFLRPTVIRD 594 >gi|294638088|ref|ZP_06716347.1| protein transport protein HofQ [Edwardsiella tarda ATCC 23685] gi|291088796|gb|EFE21357.1| protein transport protein HofQ [Edwardsiella tarda ATCC 23685] Length = 400 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 7/237 (2%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + L++ Q+ L I + ++ L+++G + +S G + + F + Sbjct: 166 VTQLDVPLP-QIQLAAHIVSMSQEGLRELGIRWRNGTASEGEHEVRRREDEAYFSAGIQV 224 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + G + L ALER + +A P L A GQ AS G + Y + G Sbjct: 225 AHIGGQ----ALAMTLAALERQDKVAIIASPQLMAAHGQMASIKQGSELPYAVSNGERGV 280 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVEL 362 +++ + + + TP VL+ RI L +Q + P V GD + ++ T V L Sbjct: 281 STMEFKEAVLGMSVTPRVLADERIELALQITQNMPGRLVRQGDSEALAIDKQEISTQVTL 340 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P+G T VL G+ + Q EG P L+ IP+LG L R E E+ I TP L+ Sbjct: 341 PNGDTAVLGGIFQYQRQDGYEGFPWLASIPLLGHLLRRDSQRSERRELVIFITPTLL 397 >gi|217969316|ref|YP_002354550.1| type II and III secretion system protein [Thauera sp. MZ1T] gi|217506643|gb|ACK53654.1| type II and III secretion system protein [Thauera sp. MZ1T] Length = 625 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 82/397 (20%), Positives = 141/397 (35%), Gaps = 42/397 (10%) Query: 103 GHDGKQMLNLDILIERDI-AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G + ++ D LE L +A + + G + + Sbjct: 210 GAGNASITQIETRSANDFWNTLEHNLAAILAGPGRAPDCGGER---RGESPAGCRNADLM 266 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 E+ + + Q + + + + A QV ++ TI EV + G + G Sbjct: 267 LNRESGIVMARATQRQHEQLEAFLAGVQRAARRQVMIEATIVEVTLADGYRQGIDWTRLG 326 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 PS S G S S + + L LE ++ L+ P L+ ++ Sbjct: 327 V---PSWSVRPRGSGDATSGQPTLSYLSA----NSDIRLELLETFGTVKVLSSPRLSVLN 379 Query: 282 GQSASFTSGGQHLYKTVSSSTG------------ATSVTTHDYGVVLHFTPTVLSPGRIG 329 Q+A + +Y V S+T T+ + G+V+ TP + + G I Sbjct: 380 NQTAMLKVVEEVVYFLVDSTTTEYDDRKQARISATTTPQSVSVGMVMSVTPQISADGDIT 439 Query: 330 LRIQTEVS---------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 L ++ +S P +G +P R R+ ++ + L SG VL GL++D I Sbjct: 440 LNVRPTISGISGFKDDPNPSLGDIPNRVPQIRTREIESMLRLRSGEVAVLGGLMEDRIDH 499 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR------DLSRPDDHY 434 IPL +P++G LF N TE+ I P L+ MR PDD + Sbjct: 500 DTGRIPLFGDLPVVGELFTRRDNNVRRTELLIFLRPLLIDEPGMRGGYAEYAGHLPDDDF 559 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471 ++ + + N + P A GF Sbjct: 560 LLDSPS----PGQRNFPHLPLRPLLAPAGAVSAAEGF 592 >gi|118579431|ref|YP_900681.1| type IV pilus secretin PilQ [Pelobacter propionicus DSM 2379] gi|118502141|gb|ABK98623.1| type IV pilus secretin PilQ [Pelobacter propionicus DSM 2379] Length = 864 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 59/298 (19%), Positives = 111/298 (37%), Gaps = 24/298 (8%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 ++E + D V+L + TI R + T + A+ + E QV Sbjct: 572 QLEALLDPVLLKEKLATITADDRTNTIIVTSVQSDIDRIRAHLVKMDI-------PEKQV 624 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFV---------SEGG 243 ++ I E + +G + + + S FGG S GG Sbjct: 625 MIEARIVEATSTFTRSLGVNWGVHYTDASGSLLGITQLDTGFGGITTAPPTSGTGDSAGG 684 Query: 244 DFSV--KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + + + + + L A A I+ ++ P + ++ + A G Q Y +S Sbjct: 685 NMGISFGALGNGVQLDMRLSAAATAGLIKIISCPKVATLNNKKAKIAQGQQIPY--TASD 742 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + L TP + + G I + I + V + P+ ++A T + Sbjct: 743 GDNVETKFVEAALSLEVTPHINANGTISMNIVAKNDSMGDAVGSSTAPAINTKEATTEML 802 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G T V+ G+ D G+P L IP +G F+ + + +TE+ + TP ++ Sbjct: 803 LRDGETTVIGGIFVDTDNDSDAGVPFLMDIPAIGKFFKTNSKTKTKTELLVFITPRIM 860 >gi|229521807|ref|ZP_04411225.1| general secretion pathway protein D [Vibrio cholerae TM 11079-80] gi|229341401|gb|EEO06405.1| general secretion pathway protein D [Vibrio cholerae TM 11079-80] Length = 674 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 70/374 (18%), Positives = 136/374 (36%), Gaps = 71/374 (18%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181 + L+R I ++ + + V++ +D ++ +SE ++ G Q S Sbjct: 245 VRERLKRLIKQLDVEMATKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKR 304 Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216 +VM N L + QV ++ I E+ +G Q Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLDVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364 Query: 217 HSITGSSSGPSKSFAADFGGKFV----------------------------SEGGDFS-- 246 S S G + +E GD++ Sbjct: 365 WGSLDSGSVIQYGNTGASIGNVMIGLEEAKEKTVTDSRWNSVTQTYEPYTRTESGDYTKL 424 Query: 247 ---------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + +++A+ ++ L+ P++T + ASF G + T Sbjct: 425 ASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVIT 484 Query: 298 VSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 SS+ +V + G+ L P + + L+I+ EVS V+G N + Sbjct: 485 GSSAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSN-VLGANGAVDVRFA 543 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR++ E+ + + Sbjct: 544 KRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV 603 Query: 413 AATPFLVKPVAMRD 426 P +++ D Sbjct: 604 FIKPTIIRDGVTAD 617 >gi|90020990|ref|YP_526817.1| Type II secretory pathway component PulD-like protein [Saccharophagus degradans 2-40] gi|89950590|gb|ABD80605.1| type II and III secretion system protein [Saccharophagus degradans 2-40] Length = 546 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 62/296 (20%), Positives = 125/296 (42%), Gaps = 29/296 (9%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKK------VMNLLNIAGEDQVTLKVTIAEVR 206 + Q Q+ + L++ G ++ ++ ++ + A + QV ++ TI EV Sbjct: 234 SQQAEQQGASHPDILLNKEGGVMAVRATYRQHKEIQHFLSEIMFASQRQVLIEATIVEVT 293 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 Q G S+ + + A V+ D + + AL+ Sbjct: 294 LSERYQAGIDWSVLQQNVADGVTRTATQDVLDVTL-QDPVFTITHVGKNLSATVKALDTF 352 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----------SSSTGATSVTTHDYGVV 315 + ++ P + ++ Q+A +Y TV S++T T V T G V Sbjct: 353 GDVSVMSSPKVMTLNNQTALLKVVDNLVYFTVDVNIETNESGPSTTTFETEVNTVPIGFV 412 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPV----------IGVNA-GDMPSYRVRKADTTVELPS 364 + TP + G + L I+ +S + VN ++P +VR+ ++ +++P Sbjct: 413 MSVTPFINEFGYVTLNIRPTISRVIGLKRDPNPALAQVNVVNEIPEIQVREVESVLKIPD 472 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G ++ GL++D+ + G+P LSKIP++G LF+ + +++E+ I P +V Sbjct: 473 GEVAIIGGLMQDEQDNTEHGVPGLSKIPLVGGLFKYTDDKVKKSELVIFIKPIVVD 528 >gi|262190137|ref|ZP_06048422.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio cholerae CT 5369-93] gi|262033978|gb|EEY52433.1| general secretion pathway protein D precursor (Cholera toxin secretion protein epsD) [Vibrio cholerae CT 5369-93] Length = 675 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 68/375 (18%), Positives = 135/375 (36%), Gaps = 72/375 (19%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181 + L+R I ++ + + V++ +D ++ +SE ++ G Q S Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKR 304 Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216 +VM N L + QV ++ I E+ +G Q Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364 Query: 217 HS-------ITGSSSGPS---------------------------------KSFAADFGG 236 I ++G S + D+ Sbjct: 365 WGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTEKKPIRNSETGEIKYYEETTTKGDYSK 424 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G + + +++A+ ++ L+ P++T + ASF G + Sbjct: 425 LASALSGLQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVI 484 Query: 297 TVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 T S++ +V + G+ L P + + L I+ EVS V+G N + Sbjct: 485 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRF 543 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR++ E+ + Sbjct: 544 AKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLM 603 Query: 412 IAATPFLVKPVAMRD 426 + P +++ D Sbjct: 604 VFIKPTIIRDGVTAD 618 >gi|146282151|ref|YP_001172304.1| general secretion pathway protein D [Pseudomonas stutzeri A1501] gi|145570356|gb|ABP79462.1| general secretion pathway protein D [Pseudomonas stutzeri A1501] Length = 644 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 111/267 (41%), Gaps = 26/267 (9%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + + ++ L+I QV ++ I EV DI +G Q +I + + +FG Sbjct: 330 GTMESIVRQLDIP-RAQVMVEAAIVEVSGDITDALGVQWAI-DARGSTGGAGGVNFGNTG 387 Query: 239 VSEGGDFSVKG--------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 +S G + + SF ++ AL + L+ P+L + Q Sbjct: 388 ISVGSVLNAINENEIPNNLPDGAIIGVGTRSFGALITALSSNSKSNLLSTPSLLTLDNQE 447 Query: 285 ASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A G ++T S +T A T++ D GV L TP + + L+I+ E+S Sbjct: 448 AEILVGQNVPFQTGSYTTDAAGANNPFTTIERQDIGVTLKVTPHINEGATLRLQIEQEIS 507 Query: 338 EPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + R +T+ G IVL GL++DD+ + +PLL IP+L Sbjct: 508 SIAPSASLTAQAVDLVTNKRAIKSTILAEDGQVIVLGGLIQDDVTRTNSKVPLLGDIPLL 567 Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421 G LFR+++ + + + P +++ Sbjct: 568 GGLFRSTQETHIKRNLMVFLRPTVIRD 594 >gi|262393141|ref|YP_003284995.1| MSHA biogenesis protein MshL [Vibrio sp. Ex25] gi|262336735|gb|ACY50530.1| MSHA biogenesis protein MshL [Vibrio sp. Ex25] Length = 530 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 113/281 (40%), Gaps = 32/281 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + + + QV L+ I EV + Q G S +S G S S + + Sbjct: 242 REFLGVSQERMQRQVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSVVVNRPASALPP 301 Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 GG +V + +F VL + + L+ P +TA + Q + G Sbjct: 302 LDAIGTLLGGQTNVT--ISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDE 359 Query: 294 LYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPV 340 + T SS +T G+ L TP + + G + L + EVSE V Sbjct: 360 YFVTELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVSEEV 419 Query: 341 IGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 +N G + +R++D+ + G +V+ GL+K ++L +P L +P Sbjct: 420 KKLNLGGEFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVP 479 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 LG LFRN E+TE+ I P +V ++L R D Sbjct: 480 ALGHLFRNVNNVTEKTELVILLKPTVVGVNSWQKELERSRD 520 >gi|124268293|ref|YP_001022297.1| fimbrial biogenesis protein [Methylibium petroleiphilum PM1] gi|124261068|gb|ABM96062.1| fimbrial biogenesis protein [Methylibium petroleiphilum PM1] Length = 721 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 102/277 (36%), Gaps = 47/277 (16%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ ++I QV ++ I E + +G + G++ PS A GG ++ G Sbjct: 444 QIIARIDIP-VRQVLIEARIVEATDTFGRSLG---AKLGATVAPSSKVNAGIGGNYLGIG 499 Query: 243 GDFSVKGVLDRFSF----------------------------------------ETVLHA 262 ++ + A Sbjct: 500 AATGQAPPINSSGLTTGTPSTNSYFVNLPAVGQNGYDAATFAVSIFNSAMNRFLNLEISA 559 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE + ++ P + A G + Y+T +SS GAT++ + L P + Sbjct: 560 LEADGKGKIVSSPRVVTADQVKALIEQGTEIPYQTATSS-GATAIQFRKATLKLEVIPQI 618 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G I L + P AG + + T V + +GGT+V+ G+ + Q Sbjct: 619 TPEGNIILDVDVNKDSPGATTAAGIL--INTKHVKTQVLVDNGGTVVIGGIYEQTEQIDN 676 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL +P+LGALFR+ +TE+ + TP +V Sbjct: 677 TKVPLLGDVPVLGALFRSQTRTSNKTELLVFLTPKVV 713 >gi|269968038|ref|ZP_06182076.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 40B] gi|269827395|gb|EEZ81691.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 40B] Length = 546 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 113/281 (40%), Gaps = 32/281 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + + + QV L+ I EV + Q G S +S G S S + + Sbjct: 258 REFLGVSQERMQRQVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSIVVNRPASTLPP 317 Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 GG +V + +F VL + + L+ P +TA + Q + G Sbjct: 318 LDAIGTLLGGQTNVT--ISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDE 375 Query: 294 LYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPV 340 + T SS +T G+ L TP + + G + L + EV+E V Sbjct: 376 YFVTELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEV 435 Query: 341 IGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 +N G + +R++D+ + G +V+ GL+K ++L +P L +P Sbjct: 436 KQLNLGGDFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVP 495 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 LG LFRN E+TE+ I P +V ++L R D Sbjct: 496 ALGHLFRNVNNVTEKTELVILLKPTVVGVNSWQKELERSRD 536 >gi|253997512|ref|YP_003049576.1| type IV pilus secretin PilQ [Methylotenera mobilis JLW8] gi|253984191|gb|ACT49049.1| type IV pilus secretin PilQ [Methylotenera mobilis JLW8] Length = 719 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 3/215 (1%) Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + Q + +SS ++ + +S+ V L A+E Sbjct: 502 THNGAVQTTLTNGGVFTSSDGQPDLMSNLAVANAAGSIAYSIYNVAAGLLLNLELTAMET 561 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 + ++ P + + A +G + Y SSS GAT+V + L TP + Sbjct: 562 DQRGKIVSSPRVITANQHKAKIAAGTEIPYLQASSS-GATNVAFKPAVLSLEVTPQITPD 620 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +I + + + + +G +PS + +T V + +G T VL G+ + + + Sbjct: 621 EKIIMELDIKKDK--VGQIFNGVPSIDTQNINTQVLVGNGETAVLGGIFEQIERDDVSKV 678 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 P +P+ G LF+ ++TE+ I TP +V Sbjct: 679 PFFGDLPLFGNLFKKKTRQNDKTELLIFITPKIVD 713 >gi|220932698|ref|YP_002509606.1| type II and III secretion system protein [Halothermothrix orenii H 168] gi|219994008|gb|ACL70611.1| type II and III secretion system protein [Halothermothrix orenii H 168] Length = 602 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 69/296 (23%), Positives = 120/296 (40%), Gaps = 21/296 (7%) Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 I I VE V + + ++ + L T Q + K+ + + Sbjct: 302 ELIPMEYIEVEKVPQLLPNNFPAANVKVLKEKNALLVT------GTQSDINKLKEYIKQI 355 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + + ++ + E+ R+ + + + + + F + G + K Sbjct: 356 DTRIPL-IVVEAVVVELTRNRQENPVIKLGM---------EYDGEEELLFDTSMGKLTYK 405 Query: 249 GVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGA 304 VLD F + AL + A P +T ++GQ A G Y +T Sbjct: 406 SVLDLPDDFYLKIEALVTEGLLTVKARPNITTLNGQQAMIDVGTVQYYKVKQTDGEGNEE 465 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 T + + GV L TP V S G I L+++ +VS G P R+ DTTV + Sbjct: 466 TQYQSINAGVSLTVTPWVSSSGEITLKLRPQVSNIGAAAAEGP-PQVSRREVDTTVRVKD 524 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T+V+ GL++D +P L+ IP++G LF++ N +TE+ I TP ++K Sbjct: 525 GQTVVIGGLIQDVGTNTTSKVPFLANIPLIGKLFKSRNNNVNQTELIIFITPRVLK 580 >gi|171321858|ref|ZP_02910757.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] gi|171092856|gb|EDT38111.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] Length = 895 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 65/312 (20%), Positives = 126/312 (40%), Gaps = 30/312 (9%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 D + LR+ I ++ V+ + +V+ TIQ ++R V Sbjct: 283 ADAKSVMAALRQMIKPKDVYVDERVNAIVMRDTPETIQVAERVVMG-------------- 328 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 L+I + +VTL V + EV + +G Q+ S + A Sbjct: 329 ----------LDIP-QSEVTLDVQVLEVNMNDSLDLGVQYPGKVQFSALGGAEGAALTLG 377 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + + + L++ +TLA P + + + AS G + T Sbjct: 378 DLLRMNRDRIGVSSESGGLALAIDMLQKRGKTKTLANPKIRVRNLEKASIKIGERVPIVT 437 Query: 298 VSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYR 352 +++ G + V+ D G++L P + + +++ EVS + S Sbjct: 438 TTNANGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILSKETTKTGLVAYSLG 497 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A+T + +G T +LAGL+K + G+P +S +P+LG LF ++ + E +EI + Sbjct: 498 TRNAETLMTAKNGETQILAGLVKRNESDSIAGLPGISGLPVLGRLFGSNSRSNERSEIVL 557 Query: 413 AATPFLVKPVAM 424 TP + + + + Sbjct: 558 LITPHIERNLDL 569 >gi|3978519|gb|AAD04923.1| PilQ [Myxococcus xanthus DK 1622] Length = 901 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 105/271 (38%), Gaps = 35/271 (12%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGP------- 226 ++ ++ L+ QV ++ I E + +G Q TG+S+G Sbjct: 625 ARSLVRSLDTQTP-QVLIESRIVEANTSFSRSLGVQWGGQARAGQATGNSTGLIFPNNLA 683 Query: 227 --------------SKSFAADF---GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + +FA + G+ V F+ L A E ++ Sbjct: 684 VTGGVTGTGAGLPDNPNFAVNLPTGTGQGVGGAMGFTFGSAGGALQLNLRLSAAENEGSV 743 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 +T++ P +T + +A G + S+ + T + + L TP + G + Sbjct: 744 KTISAPKVTTLDNNTARINQGVSIPFSQTSAQ--GVNTTFVEARLSLEVTPHITQDGSVL 801 Query: 330 LRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + I ++P A PS + ++A+T V + G T V+ G+ +P L Sbjct: 802 MSINASNNQPDPSSTGANGQPSIQRKEANTQVLVKDGDTTVIGGIYVRRGATQVNSVPFL 861 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 S+IP+LG LF+N+ E+ I TP ++ Sbjct: 862 SRIPVLGLLFKNNSETDTRQELLIFITPRIL 892 >gi|71280237|ref|YP_271224.1| MSHA biogenesis protein MshL [Colwellia psychrerythraea 34H] gi|71145977|gb|AAZ26450.1| MSHA biogenesis protein MshL [Colwellia psychrerythraea 34H] Length = 609 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 62/300 (20%), Positives = 113/300 (37%), Gaps = 32/300 (10%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 V G R++ S +A ++ L Q ++ KK + QV ++ I EV Sbjct: 249 VGTGEGRSVIVSPQAGLVTVRALPQE------LTAVKKFITATESHLHRQVIIEAKIMEV 302 Query: 206 RRDILKQIGFQHSITGSSSG-------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 + Q G + + G + + + + + F Sbjct: 303 TLNDDFQQGIKWNKVLDQVGSADIIYSTTGNVVGNVISNTIGGVNSINFSKQTSGSDFSG 362 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----------VSSSTGATSVT 308 V+ L+ ++ L+ P +TA + Q A G + T +++T +T Sbjct: 363 VIELLQTQGNVQVLSSPRITATNNQKAVIKVGEDEYFVTEVSSTTTTGTSTTTTPEVELT 422 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS-------EPVIGVNAGDMP--SYRVRKADTT 359 G+ L TP + G + L + V+ IG +P VR++DT Sbjct: 423 PFFSGIALDVTPQISKDGSVILHVHPSVTITEEQSKTIKIGDTTLVLPLAQSSVRESDTI 482 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + SG +V+ GL++ ++ P+L IP LG LF+N ++ E+ I P +V Sbjct: 483 IRANSGEVVVIGGLIETYNIDIESKTPILGDIPYLGELFKNKSQKSQKRELVIMLKPIVV 542 >gi|296123515|ref|YP_003631293.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] gi|296015855|gb|ADG69094.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] Length = 915 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 131/325 (40%), Gaps = 34/325 (10%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 ++ L+ ++ + + +V + ++ ++ A + LSQ R+ Sbjct: 444 NVKELQQLVQPILTPTLGKVSIT--------SPSSVGIAENATDAGGDSLSQ--RDALLV 493 Query: 179 SSSKKVMNLLNIA------GEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-----SGPS 227 ++V+N ++ QV + I V+ G ++ G +G Sbjct: 494 QDYEEVINEIDRVIIEMDIPPLQVIIDAKILSVKLTDDMAFGVNLALLGGDKNLAVTGNG 553 Query: 228 KSFAADFG-----GKFVSEGGDFSVKGVLDRFSFET-----VLHALERATAIRTLAEPTL 277 S A G G + G F ++ F + ALE +A P + Sbjct: 554 ASIATSSGFPGGTGSIIPPGAQFLANTAGLKYGFIAGDITGFIRALESIADTSLVASPQI 613 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 A++ Q A G + YKT++ ++ T +V + G L P + G + + + E Sbjct: 614 RALNKQRAEMIIGNRLSYKTLAFNSTQTIENVNFLESGTKLIIRPFIAPDGLVRMEVHPE 673 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S VI + G +P + T V + G T+V+ GL+ ++ + + +P+L IP++G Sbjct: 674 RSRAVINQSTG-LPDQDTTEVTTNVMVRDGQTVVIGGLISEESTESIDRVPVLGAIPLVG 732 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 A FRN E TE+ + TP +V Sbjct: 733 AAFRNKSSRIERTELIVLITPRIVD 757 >gi|315636411|ref|ZP_07891655.1| general secretion pathway protein D [Arcobacter butzleri JV22] gi|315479277|gb|EFU69966.1| general secretion pathway protein D [Arcobacter butzleri JV22] Length = 478 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 112/239 (46%), Gaps = 14/239 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGK-------FVSEGGDF 245 QV ++ I EV +++ +IG + I SS S + +++ G + G Sbjct: 175 QVYVQAKIIEVNNELVNKIGISYGIINSSARSDGINAISSNLNGGSNAIKEAVDTLGIRM 234 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA- 304 + + + L+ L++ A+ ++EP++ AI + +S G + + S+ T Sbjct: 235 NDLNIKSGLALGASLNLLQQNGALDIVSEPSILAIDNKESSIYVGEKISVEISSTLTDGG 294 Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTV 360 T+ D G+ L P + S ++ L I T + V+AG P ++ T Sbjct: 295 LQRTNYEREDIGLTLKVKPRISSDTKLTLEINTLLEGIKSTSVSAGQNPDTLKKEIKTAA 354 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L +G ++++ GL+++ + +++ +P+L IP+ G LF+N ++ + I TP+++ Sbjct: 355 ILNNGESVIIGGLIENKNETIEQKVPVLGDIPLFGELFKNDSKMNKKNNLVIIVTPYMI 413 >gi|167589893|ref|ZP_02382281.1| type II and III secretion system protein [Burkholderia ubonensis Bu] Length = 773 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 69/357 (19%), Positives = 134/357 (37%), Gaps = 30/357 (8%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 D + LR+ I ++ V+ + VV+ TIQ ++R V Sbjct: 267 ADAKSVMAALRQMIKPKDVYVDERVNAVVMRDTPETIQVAERVVMG-------------- 312 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 L+I + +VTL V + EV + +G Q+ S Sbjct: 313 ----------LDIP-QSEVTLDVQVLEVNMNDSLDLGVQYPGKVQFSALGGVEGGALTLG 361 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + V + + L++ +TLA P + + + A+ G + T Sbjct: 362 DLLRLNRDRVGVASESGGLALAIDMLQKQGKTKTLANPKIRVRNMEKANIKIGERVPIVT 421 Query: 298 VSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYR 352 +++ G + V+ D G++L P + + +++ EVS + + Sbjct: 422 TTNANGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILSKETTKTGLVAYALG 481 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A+T + +G T +LAGL+K + + G+P +S +P++G LF ++ + E TEI + Sbjct: 482 TRNAETLMTAKNGETQILAGLVKRNESENIAGLPGMSGLPVIGRLFGSNGRSNERTEIVL 541 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 TP + + + + + E + P A +G + I Sbjct: 542 LITPHIERNLDLPTSAVTTFLSGTESRVTTEALTLESARAVPARADSKDGPDLDAPI 598 >gi|225850376|ref|YP_002730610.1| general secretion pathway protein D [Persephonella marina EX-H1] gi|225645330|gb|ACO03516.1| general secretion pathway protein D [Persephonella marina EX-H1] Length = 669 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 70/292 (23%), Positives = 120/292 (41%), Gaps = 28/292 (9%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 N+ + K+++ L+ + QV + I EV LK+IG + + GS G + Sbjct: 350 ANKTEYEAIKELVQNLD-KQKKQVLVTALITEVSEQALKEIGVRWQVFGSQGGAAFRGGI 408 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVL--------------HALERATAIRTLAEPTLT 278 G + G V GVL + LER T ++ P + Sbjct: 409 SKEGFYNIIGSTNFVAGVLSTSGENVEIGGNVLFFPDLLFLFSLLERGTGFNIVSSPKIL 468 Query: 279 AISGQSASFTSGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + AS + + + + G++L TP + I + I Sbjct: 469 TMDNIEASINVSQVTPFAQSVKFDINGNPIINYDYKEVGLILKVTPHISGDN-IVMEIHQ 527 Query: 335 EVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 EV+E P IG + +P R+ +TT+ + +G TIVL GL+ + EG+P Sbjct: 528 EVNEVIGYEKPQIGEISYVVPITSKRELNTTITVTNGKTIVLGGLVSKKTIKTMEGVPFF 587 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 S IPI+G LF+ + +T +F+ TPF+++ DL+R + + +A Sbjct: 588 SSIPIIGNLFKYRSEDLNKTNLFVFLTPFIIE--KPEDLARITEEHQKLSEA 637 >gi|124385937|ref|YP_001027735.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] gi|124293957|gb|ABN03226.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] Length = 616 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G AA F Sbjct: 376 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 435 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 436 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 494 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 495 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 552 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 553 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 612 Query: 419 V 419 V Sbjct: 613 V 613 >gi|330820184|ref|YP_004349046.1| type II and III secretion system protein [Burkholderia gladioli BSR3] gi|327372179|gb|AEA63534.1| type II and III secretion system protein [Burkholderia gladioli BSR3] Length = 697 Score = 170 bits (432), Expect = 4e-40, Method: Composition-based stats. Identities = 74/340 (21%), Positives = 131/340 (38%), Gaps = 30/340 (8%) Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 LR+ + +I V+ + +VL TIQ ++R V Sbjct: 280 AALRQMVKPKDIYVDERVNAIVLRDTPETIQVAERVVIG--------------------- 318 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 L+I + +VTL V + EV + +G Q+ S + Sbjct: 319 ---LDIP-QSEVTLDVQVLEVNVNDSVDLGLQYPGKIQFSALGAGEEVGLTLGDLLRLNR 374 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + + + L++ RTLA P + + + A+ G + T ++ G Sbjct: 375 DRIGVASESGALSMAIDMLQKQGKTRTLANPKIRVRNLEKANIRIGERVPIVTTTNGNGV 434 Query: 305 TS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTT 359 + V+ D G++L P V + +++ EVS + + S R ADT Sbjct: 435 VTESVSYQDVGLMLKVQPRVSLDDEVSVKVSLEVSNILSEQRTRSGLVAYSLGTRNADTL 494 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +G T VLAGL+K + + G+P LS +P+LG LF + R EETEI + TP + Sbjct: 495 MTARNGQTQVLAGLIKRSEIESRAGLPWLSSLPVLGRLFGSERTRNEETEIVLLITPHIE 554 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + + + + + E + G + A Sbjct: 555 RRLDLPEAAVTTFLSGTETRVTTEALSLAPAGAGREPAPP 594 >gi|119773310|ref|YP_926050.1| type II and III secretion system protein [Shewanella amazonensis SB2B] gi|119765810|gb|ABL98380.1| type II and III secretion system protein [Shewanella amazonensis SB2B] Length = 703 Score = 170 bits (432), Expect = 4e-40, Method: Composition-based stats. Identities = 59/285 (20%), Positives = 111/285 (38%), Gaps = 48/285 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235 + V+N L+I QV ++ I EV G Q + + G Sbjct: 340 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATESGGGTQFNNLGPTIGEIGAGI 398 Query: 236 --------GKFVSEGGDFS-------------------------VKGVLDRFSFETVLHA 262 + + G+ + + + F ++ A Sbjct: 399 WQARGEEASEVTTIDGNGNPIVSKNPEKRGDITLLAQALGKVNGMAWGVAMGDFGALIQA 458 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVL 316 + T LA P++T + Q A+F G + T + ++ +V + GV L Sbjct: 459 VSSDTNSNVLATPSITTLDNQEAAFIVGDEVPVLTGAQNSSNGNSNPFQTVERKEVGVKL 518 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP + + L I+ EVS I G ++ R+ TTV SG +VL GL+ + Sbjct: 519 KVTPQINEGNAVKLAIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLINE 576 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 ++Q+ + +P+L IP+LG LF++S +++ + + P +++ Sbjct: 577 EVQESVQKVPILGDIPLLGHLFKSSSSGKKKKNLMVFIKPTIIRD 621 >gi|300113065|ref|YP_003759640.1| type IV pilus secretin PilQ [Nitrosococcus watsonii C-113] gi|299539002|gb|ADJ27319.1| type IV pilus secretin PilQ [Nitrosococcus watsonii C-113] Length = 699 Score = 170 bits (432), Expect = 4e-40, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 105/269 (39%), Gaps = 31/269 (11%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGG 236 ++ +K++ L+I QV ++ + D +++G + ++ G Sbjct: 430 AALRKLVASLDIP-VRQVLIESRVVIASSDFSRELGVRFGLSKQDKVGGAFDQVTTSGSL 488 Query: 237 KFVSEGGDFSVKGVLDRFS------------FETVLHAL-------------ERATAIRT 271 ++ + + DR + L L + Sbjct: 489 NGTTQIINQETLELQDRLNVNFPVTKKDAAKIALALTNLPLGALLELELSALQAEGRGEV 548 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 ++ P + + + A G + Y+ SSS GATSV+ + L TP + RI + Sbjct: 549 ISNPRVITSNQKEAIIEQGTEIPYQRASSS-GATSVSFKKAVLSLKVTPQITPDDRIIMD 607 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + V++ +G +PS R+ T V + +G T+VL G+ + + + IP L + Sbjct: 608 L--GVTKDSVGKVFAGVPSINTREVSTQVLVNNGQTVVLGGIYEQEKNRAVRRIPFLGDL 665 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P G LFR+ + E+ I TP ++K Sbjct: 666 PYAGILFRDKTEFNNKRELLIFVTPKIIK 694 >gi|332977545|gb|EGK14316.1| type IV pilus biogenesis protein PilQ [Psychrobacter sp. 1501(2011)] Length = 608 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 104/276 (37%), Gaps = 43/276 (15%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 +++ ++I QV ++ I + K++G + I + + + + +++ Sbjct: 333 LISQIDIP-VQQVMIEARIVSATDNFSKELGVKWGILSNGVANNDTLLVGGSDQTLADLK 391 Query: 244 DFS-------------------------------------VKGVLD--RFSFETVLHALE 264 FS G+L + L A++ Sbjct: 392 QFSRRNTTFKGKPVSYPDYAVSRPDNLNIDLGIANPAGSIAFGILSMSDLMIDLELSAMQ 451 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 ++ P + + Q+A +SG + Y++ S G T+ + + L TP + Sbjct: 452 AEGRGEVISTPKILTLDKQTAKVSSGTKIPYQS-ESEGGGTTTQFEEALLSLEVTPNITP 510 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G I L++ E P + + + T V + G TIVL G+ ++ I E Sbjct: 511 EGEISLQLNIENGRP--NPVSSGVILIDTDRLSTHVTVADGQTIVLGGIYRNQIFNNVEK 568 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P +P+LG LF+ ++ E+ I TP L++ Sbjct: 569 VPFFGDLPLLGRLFKKDLRRNDKQELLIFVTPTLIQ 604 >gi|254225450|ref|ZP_04919061.1| general secretion pathway protein D [Vibrio cholerae V51] gi|125622084|gb|EAZ50407.1| general secretion pathway protein D [Vibrio cholerae V51] Length = 675 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 68/375 (18%), Positives = 135/375 (36%), Gaps = 72/375 (19%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181 + L+R I ++ + + V++ +D ++ +SE ++ G Q S Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKR 304 Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216 +VM N L + QV ++ I E+ +G Q Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364 Query: 217 HS-------ITGSSSGPS---------------------------------KSFAADFGG 236 I ++G S + D+ Sbjct: 365 WGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTEKKPIRNSETGEIKYYEETTTKGDYSK 424 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + G + + +++A+ ++ L+ P++T + ASF G + Sbjct: 425 LASALSGLQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVI 484 Query: 297 TVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 T S++ +V + G+ L P + + L I+ EVS V+G N + Sbjct: 485 TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRF 543 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR++ E+ + Sbjct: 544 AKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLM 603 Query: 412 IAATPFLVKPVAMRD 426 + P +++ D Sbjct: 604 VFIKPTIIRDGMTAD 618 >gi|223040615|ref|ZP_03610885.1| type II and III secretion system protein [Campylobacter rectus RM3267] gi|222878073|gb|EEF13184.1| type II and III secretion system protein [Campylobacter rectus RM3267] Length = 513 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 113/311 (36%), Gaps = 35/311 (11%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 +L+ +I + + ++ +G S + + + + QV + V+I Sbjct: 181 KAILNNTTESIVAPDPIINANAGLVTVTGTAAQLRRVSDYIKD-IQERLKKQVIIDVSIV 239 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------- 252 V G S + + S GG + + Sbjct: 240 SVELANSYTKGIDWSKFSIGFKTGFANGIPLFSEQNSNGGSLTWSNRGNSFSRGFNRELS 299 Query: 253 -----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------ 301 F+ + VL+ LE + ++ P +T ++ Q A + G Y+ S Sbjct: 300 LLSGFNFNLDGVLNFLETNGKTKVISSPKITTLNNQQALISVGDNVNYRVQEESQNNNSL 359 Query: 302 TGATSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MP 349 G T++T Y G++L+ P V +I LRI +S + P Sbjct: 360 NGKTTITYKQYSVFIGILLNILPEVSDDNKIMLRINPSLSSFKYNEDDVRQSTKIREIAP 419 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +K T V++ SG TIVL GL+ + +P L IP+ G F++++ N TE Sbjct: 420 DTIQKKLSTVVQVNSGDTIVLGGLIAQSKGKENTKVPFLGDIPVFGNAFKSTKDNIRTTE 479 Query: 410 IFIAATPFLVK 420 + TP +V Sbjct: 480 LVFIITPRIVD 490 >gi|108759429|ref|YP_633909.1| type IV pilus secretin PilQ [Myxococcus xanthus DK 1622] gi|108463309|gb|ABF88494.1| type IV pilus secretin PilQ [Myxococcus xanthus DK 1622] Length = 901 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 106/271 (39%), Gaps = 35/271 (12%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGP------- 226 ++ ++ L+ QV ++ I E + +G Q TG+S+G Sbjct: 625 ARSLVRSLDTQTP-QVLIESRIVEANTSFSRSLGVQWGGQARAGQATGNSTGLIFPNNLA 683 Query: 227 --------------SKSFAADF---GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 + +FA + G+ V F+ L A E ++ Sbjct: 684 VTGGVTGTGAGLPDNPNFAVNLPTGTGQGVGGAMGFTFGSAGGALQLNLRLSAAENEGSV 743 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 +T++ P +T + +A + G + S+ + T + + L TP + G + Sbjct: 744 KTISAPKVTTLDNNTARISQGVSIPFSQTSAQ--GVNTTFVEARLSLEVTPHITQDGSVL 801 Query: 330 LRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + I ++P A PS + ++A+T V + G T V+ G+ +P L Sbjct: 802 MSINASNNQPDPSSTGANGQPSIQRKEANTQVLVKDGDTTVIGGIYVRRGATQVNSVPFL 861 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 S+IP+LG LF+N+ E+ I TP ++ Sbjct: 862 SRIPVLGLLFKNNSETDTRQELLIFITPRIL 892 >gi|94500433|ref|ZP_01306965.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65] gi|94427468|gb|EAT12446.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65] Length = 524 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 115/270 (42%), Gaps = 24/270 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGG 236 S+ ++ ++ ++ QV ++ I EV + Q G Q SS + S +A Sbjct: 232 SAVEQFLDKAQLSLNKQVIIEAKILEVTLNDGYQAGIQWDGLASSGSTEFTPSLSATTLR 291 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G FS+ F V+ L+R ++ L+ P ++ ++ Q A G + Sbjct: 292 NPDDIDGIFSLA--FTGSDFTGVIQLLKRQGKVQVLSSPRISTVNNQKAVIKVGTDEFFV 349 Query: 297 TVSSST-----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----- 340 T S+ ++T G+ L TP + + L + V+E V Sbjct: 350 TDVSNDTTTTTTTTSTNPEVTLTPFFSGIALDVTPQISENNDVILHVHPSVTEVVERNKV 409 Query: 341 --IGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 +G + ++P +R+ D+ + +G +V+ GLL+D + +P L++IPILGA Sbjct: 410 IELGDDIFNLPLAVSSIRETDSIIRARNGQVVVIGGLLQDKQSRTDASVPWLARIPILGA 469 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LFR S ++E+ I P +V +D Sbjct: 470 LFRQSDQESTKSELVILLQPKVVDEDTWQD 499 >gi|89901694|ref|YP_524165.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89346431|gb|ABD70634.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 710 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 100/282 (35%), Gaps = 42/282 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKS 229 ++++ L+I QV ++ I E K +G + S + Sbjct: 433 QQLIAKLDIP-VRQVLIEARIVEASDTFGKSLGVKLGGNDLRAQRGGDGGYQLSGDNRVA 491 Query: 230 FAADFGGKFVSEGGD--------------------------FSVKGVLDRFSFETVLHAL 263 F +G S G S+ L AL Sbjct: 492 FGTSYGNAVASSGAGGVVDLTSNFVNLPAVGQGGYNPATFALSIFSSAANRFLNLELSAL 551 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E + ++ P + A G + Y+ SSS GAT++ + L TP + Sbjct: 552 EADGKGKVVSSPRVVTADQIKALIEQGTELPYQVASSS-GATAIAFRKANLKLEVTPQIT 610 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G I L + +V++ +G + + + T V + +GGT+V+ G+ + + Sbjct: 611 PEGNIILDL--DVNKDTVGQSTAAGFAINTKHIKTQVLVENGGTVVIGGIFELTESDNET 668 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +P L +P +G LF+ + E+ + TP +V A R Sbjct: 669 KVPFLGDLPGVGNLFKTRGRVSNKQEMLVFITPKVVADRAAR 710 >gi|91225619|ref|ZP_01260693.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 12G01] gi|91189739|gb|EAS76013.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 12G01] Length = 529 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 113/281 (40%), Gaps = 32/281 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + + + QV L+ I EV + Q G S +S G S S + + Sbjct: 241 REFLGVSQERMQRQVILEAKILEVTLNDGYQQGINWSNLSASIGNSGSIVVNRPASTLPP 300 Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 GG +V + +F VL + + L+ P +TA + Q + G Sbjct: 301 LDAIGTLLGGQTNVT--ISDGNFNAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDE 358 Query: 294 LYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPV 340 + T SS +T G+ L TP + + G + L + EV+E V Sbjct: 359 YFVTELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEV 418 Query: 341 IGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 +N G + +R++D+ + G +V+ GL+K ++L +P L +P Sbjct: 419 KQLNLGGDFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVP 478 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 LG LFRN E+TE+ I P +V ++L R D Sbjct: 479 ALGHLFRNVNNVTEKTELVILLKPTVVGVNSWQKELERSRD 519 >gi|254507437|ref|ZP_05119572.1| msha biogenesis protein mshl [Vibrio parahaemolyticus 16] gi|219549693|gb|EED26683.1| msha biogenesis protein mshl [Vibrio parahaemolyticus 16] Length = 527 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 116/288 (40%), Gaps = 39/288 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGG 236 ++ + + + QV L+ I EV Q G S SS+G + + D G Sbjct: 232 REFLGVSQQRMQRQVILEAKILEVTLSDGYQQGINWSKAFSSNGTNYTIGQGSIVKDTSG 291 Query: 237 KFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + GG ++ V+ SF+ VL + + L+ P +TA + Q Sbjct: 292 SIIPAVLPGLDAIGTLLGGQSNL--VISSGSFDAVLSFMATQGDLNVLSSPRVTASNNQK 349 Query: 285 ASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 A G + T SS + +T G+ L TP + G + L + Sbjct: 350 AVIKVGTDEYFVTDLSSVVGNGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHP 409 Query: 335 -------EVSEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +V E G + +P R +R++D+ + G +V+ GL+K + + Sbjct: 410 AVIDVNEQVKEIGFGDSRITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTVDQVSKV 469 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 P+L +P+LG LFRN+ ++TE+ I P +V ++L R D Sbjct: 470 PVLGDVPVLGHLFRNTSKLTQKTELVILLKPTVVGVNTWQKELERSRD 517 >gi|90023220|ref|YP_529047.1| helix-turn-helix, AraC type [Saccharophagus degradans 2-40] gi|89952820|gb|ABD82835.1| type II and III secretion system protein [Saccharophagus degradans 2-40] Length = 666 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 104/268 (38%), Gaps = 32/268 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------------T 220 ++ L+I QV ++ I ++ D K++G Q T Sbjct: 337 TIVERLDIK-RAQVLVEAIIVDINVDANKELGVQWMFSNENNGTFGGSSQGDGSLGSLAT 395 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G+ G + + G + G V G +F +L AL+ ++ L+ P+L + Sbjct: 396 GTLGGGTDALTNLASGIAGNTGQLLGVAGNNGGENFIALLSALQTSSDANILSTPSLVTM 455 Query: 281 SGQSASFTSGGQHLYKTVSS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 Q AS + G ++T S T++ D G+ L TP V +I L Sbjct: 456 DNQEASISVGQSVPFRTGSYSTTGTTGSVGNPFTTIQREDVGITLTVTPHVNEGNKILLD 515 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 I EVS V K +T + G ++L GL+++D+Q +PLL I Sbjct: 516 ISQEVSSISSSVAGSADLITNQSKIETQLLANDGQIVILGGLIQEDVQDGDTRVPLLGSI 575 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P+LG LF+ + + + +V Sbjct: 576 PLLGHLFKYQSTKFLKKNLMVFIRVKIV 603 >gi|327479223|gb|AEA82533.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri DSM 4166] Length = 706 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 100/280 (35%), Gaps = 35/280 (12%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + Q ++++ L+I QV ++ I E K +G + + ++ Sbjct: 420 QTQERLDELRRIVAQLDIP-VRQVMIEARIVEANVGYDKALGVRWGGSYTNDNWGLYGKD 478 Query: 233 DFGGK---------------------------------FVSEGGDFSVKGVLDRFSFETV 259 G+ ++ + V D + Sbjct: 479 GAIGRDEDGGRYLLPGTDKVGNFTLEDALAPVPFVDLGVLNSTAGIGIGYVSDHGILDLQ 538 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L A+E+ +++P + ++A G + Y+ SSS ++ + + + L T Sbjct: 539 LSAMEKTGNGEIVSQPKVVTADKETAKILKGAEIPYQEASSSGATST-SFKEAALSLEVT 597 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + RI + ++ P +P + + V + G TIV+ G+ + Sbjct: 598 PQITPDNRIIMEVKVTKDAPDFANALNGVPPINKNEVNAKVLVTDGETIVIGGVFSNSQI 657 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 E +P L +P +G LFR +++E+ + TP ++ Sbjct: 658 SSIEKVPFLGDVPFVGRLFRRDIVEDKKSELLVFLTPRIL 697 >gi|307826274|ref|ZP_07656482.1| type IV pilus secretin PilQ [Methylobacter tundripaludum SV96] gi|307732679|gb|EFO03548.1| type IV pilus secretin PilQ [Methylobacter tundripaludum SV96] Length = 785 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 97/277 (35%), Gaps = 33/277 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVS 240 KK++ L++ QV ++ + + +G + +S G KSFA G + Sbjct: 510 KKLIRKLDVP-VRQVMIEARVVIADDSFTENLGVKFGAAKAASLGSGKSFAVGGSGTKGN 568 Query: 241 EGGDFSVKGVLDRFS------------------------------FETVLHALERATAIR 270 G + + L AL+ Sbjct: 569 GNLQPDANGNIGTLNDTLVDLGVAGLTATPPGALGMTLARGADYVLNLELQALQIEGKGE 628 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 ++ P + + +A G Q T ++ + T D + L+ TP + G + + Sbjct: 629 IVSNPRVMTMDRCTAVMMQGVQIPVTTPGTANTPPTTTYIDAVLKLNATPQITPSGSVIM 688 Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + N P R+ T+V + G T+VL G+ + K IP + Sbjct: 689 NLLITKDNANTTSNPVSGNPGIDKREIKTSVLVEDGETVVLGGVYEGAESYGKNKIPFFA 748 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +P +G LF NS N+ + E+ I TP ++K D Sbjct: 749 DLPGIGFLFTNSTTNKTKKELLIFVTPKIMKDNVASD 785 >gi|163883892|gb|ABY48121.1| RcpA [Yersinia ruckeri] Length = 304 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 25/294 (8%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + + + I+ V ++ + S AD + ++ ++ K G A L Sbjct: 32 AEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKKN 91 Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 K + + + +++ I+ + +R DS I + + + +L G +T + + ++ Sbjct: 92 KPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVAN 151 Query: 167 FLSQSGRNQ----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + Q Y S + N + I +QV +K+TIAEV +D IG S G+ Sbjct: 152 AIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIGN 211 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 SG + G T++ A+ + R LAEP L+ +SG Sbjct: 212 VSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLSG 252 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 ++ASF GG+ VS++ +V+ ++G+ L+ V RI +++ EV Sbjct: 253 ETASFLVGGELPI--VSTTQNTINVSYKEFGIKLNIGAKVSESKRIRVKLDEEV 304 >gi|260428676|ref|ZP_05782654.1| general secretion pathway protein D [Citreicella sp. SE45] gi|260420270|gb|EEX13522.1| general secretion pathway protein D [Citreicella sp. SE45] Length = 320 Score = 170 bits (431), Expect = 5e-40, Method: Composition-based stats. Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 13/314 (4%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 R+ + L + + V + S+ Q + A + S L + Sbjct: 6 NRNAEEVAPILNNLLLGGSETVSLSSEQGSTSAASSGSQTYKVAADTSRNALIVRATQEE 65 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 + + +L A QV L+ TIAEV + +G + S + G Sbjct: 66 HREITAMLRDLDTAA--RQVLLEATIAEVTLNDELNVGVRWYFQNGDVATRFSDLENGGV 123 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G +L R L+AL T ++ ++ PTL + Q G Q Sbjct: 124 AGNYPG----FSAILSRGGANVALNALAAVTDVKVISSPTLMVVDNQEGLLQIGDQVPIA 179 Query: 297 TVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMP 349 +SS T V D G++L P + + G + L+I+ EVS+ +G D P Sbjct: 180 RQTSSEANADAVVLTQVEYRDTGIILKVRPRIGADGAVNLKIEQEVSDVSATRTSGIDSP 239 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + RK T L G T+ L GL+++ + + +P L ++P++G LFR ++ TE Sbjct: 240 TISTRKVSTHAVLADGQTLTLGGLVQERDNKTRAEVPGLGRVPVVGTLFRAKDNAKDRTE 299 Query: 410 IFIAATPFLVKPVA 423 + I P +V A Sbjct: 300 LIIMIRPRVVHNAA 313 >gi|254246562|ref|ZP_04939883.1| AscC [Burkholderia cenocepacia PC184] gi|124871338|gb|EAY63054.1| AscC [Burkholderia cenocepacia PC184] Length = 543 Score = 170 bits (431), Expect = 5e-40, Method: Composition-based stats. Identities = 86/434 (19%), Positives = 153/434 (35%), Gaps = 42/434 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P + PP + ++AA D + + +++ + + L D Sbjct: 87 GPPIPLAPPARMSDAAARQPGDADDARRISLNL---QGVGLAAAFDAIARFTGLNIVVGE 143 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL--DILIERDIAHLEMTLRRFIADSNIR 137 V T+ L +A L+ G M I + A L R Sbjct: 144 QVRGTVTLRLNNVRWREAFDTLLDTHGLAMSRRGNVIWVTP-AAELAARERERFEMHARA 202 Query: 138 VEM---VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG-- 192 ++ S T VLH QD QR + + S R A ++ + ++A Sbjct: 203 ADLEPLASRTFVLH--YPRAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRI 260 Query: 193 -------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADF-- 234 QV ++ I E + + +G + ++ PS SF A+ Sbjct: 261 TQIAGLIDAIDRPSRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPSAEGASFTANARN 320 Query: 235 --------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 G F + F++ + L ALE + ++ P + A Sbjct: 321 ALDLAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAI 380 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 381 VEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTA 437 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P+ + T VE+ +GGT+ + G+ + + +PLL KIP LGALFR+ + Sbjct: 438 AGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQ 497 Query: 407 ETEIFIAATPFLVK 420 E+ + TP +V Sbjct: 498 RNELVVFITPTVVD 511 >gi|254293816|ref|YP_003059839.1| general secretion pathway protein D [Hirschia baltica ATCC 49814] gi|254042347|gb|ACT59142.1| general secretion pathway protein D [Hirschia baltica ATCC 49814] Length = 660 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 58/292 (19%), Positives = 113/292 (38%), Gaps = 44/292 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKF 238 ++V+ L+ QV ++ I E+ + +++G + ++GS S + A +F Sbjct: 339 ERVVEELDQR-RSQVLVEAIIVELSDNAARELGLEFVLSGSGSSATPFAATNFTRSTTNV 397 Query: 239 VSEGGDFSVKG--------------------------------VLDRFSFETVLHALERA 266 +S G ++ D F +++A++ Sbjct: 398 LSLAGALALDSDTVGEETVSSLRSAAISSLLGSAGGLLGIGGQSSDGTIFGAIINAVDSD 457 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTPT 321 L+ P L + + AS T G + T ++S +V GV L P Sbjct: 458 ITSNVLSTPHLLTMDNEKASITVGQEVPITTGEALGTNNSNPFRTVERKPLGVTLEVEPQ 517 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + I L ++ EVS ++ D + R+ +TT+ G +VL GL++++ Sbjct: 518 IGEGDSIKLNLRQEVSSIFDSIDGTDFIT-NNREINTTILADDGEIVVLGGLIQEEETLN 576 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433 +PLL IP +G LF + ++ T + + P +V+ + R D Sbjct: 577 ISKVPLLGDIPGVGRLFSSEGTTKKRTNLMVFLKPTIVR--DAETMQRATDQ 626 >gi|284432099|gb|ADB84857.1| PilQ [Bdellovibrio sp. JSS] Length = 724 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 99/243 (40%), Gaps = 14/243 (5%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKF 238 QV+++ I E + + IG S TG+ + PS + G Sbjct: 467 TQPAQVSIEGKIVEAKESFTRNIGVNWSATGAPIKLGSTARGPVNMNPSFNVNQSAAGSS 526 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + +V + + L E ++ ++ P + +S + A + + V Sbjct: 527 GALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQTTEVPVRQV 586 Query: 299 SSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 + + AT + + L TP V + G + +++ + + + R+A Sbjct: 587 TQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVNRQFRGADVSSAGQGAFAVNSREA 646 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T V + +G T V+ G+ + D + G+P ++P + LF+ ++E++E+ I TP Sbjct: 647 NTRVLVKNGQTAVIGGIYQSDATDGEVGVPWFRELPYVSYLFKTKNISKEKSELLIFLTP 706 Query: 417 FLV 419 ++ Sbjct: 707 XIM 709 >gi|212633381|ref|YP_002309906.1| type II and III secretion system protein:secretin [Shewanella piezotolerans WP3] gi|212554865|gb|ACJ27319.1| Type II and III secretion system protein:Secretin [Shewanella piezotolerans WP3] Length = 558 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 107/264 (40%), Gaps = 26/264 (9%) Query: 182 KKVMNLLNIAG---EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++V N + A + QV L+ + EV Q G +G + Sbjct: 271 RQVRNFIKTAESHLQRQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDITFGTSPTTG 330 Query: 239 VSEGGDFSVKGV----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +S+ + GV L F T++ L+ + L+ P +TA + Q A G Sbjct: 331 LSDQITSVLGGVTSIQLKGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEY 390 Query: 295 YKTVSSST---GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 + T SST G T VTT + G+ L TP + + G + L I V + Sbjct: 391 FVTDVSSTTVAGTTPVTTPEVELTPFFSGIALDVTPQIDAEGNVLLHIHPSVIDIKEQTK 450 Query: 345 AGDMPSYR---------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + +R++DT ++ SG +V+ GL+K + +L +PLL IP LG Sbjct: 451 TIKISDSTLELPLAQSEIRESDTVIKAASGDVVVIGGLMKSENIELVSKVPLLGDIPYLG 510 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 F N + +TE+ I P +V Sbjct: 511 EAFTNRANSTVKTELVILLKPVVV 534 >gi|56476093|ref|YP_157682.1| general (Type II) secretion pathway (GSP) D protein [Aromatoleum aromaticum EbN1] gi|56312136|emb|CAI06781.1| General (Type II) secretion pathway (GSP) D protein [Aromatoleum aromaticum EbN1] Length = 771 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 136/338 (40%), Gaps = 48/338 (14%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 D + L++ + ++ ++ + +V+ +D+ +AV L+E L+ Sbjct: 278 NADAKQAQSLLKQLVKSKDMFIDEKLNLLVI-------KDTPQAVRLAERLLA------- 323 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKS 229 L++A + V L+V + EV R L+++G + Sbjct: 324 ----------SLDVAEPE-VMLEVEVLEVARSKLRELGLDFPDEIGYGLLRSQQQITQTQ 372 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTA 279 AA + V+ G GV+ R + L LA P + Sbjct: 373 TAAGIVSEVVTLPGSEIAPGVVPRAQWGDLTGYVTNPALTLRLRAEDGDTNLLANPRIRV 432 Query: 280 ISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + + A G + T +S+ + SV+ D G+ L P V + +++ EV Sbjct: 433 KNREKAKIHIGEKLPVFTTTSTANVGVSASVSYLDVGLKLDVEPAVTLDDEVAIKVALEV 492 Query: 337 SEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 S V G + R A T + L +G T VLAGL+ D+ ++ + +P L +P+ Sbjct: 493 SNIVREVPGPSDSLAYQVGTRSATTVLRLRNGETQVLAGLISDEERRSAQRLPGLGDLPL 552 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 +G LF + R N +TEI + TP +V+ + L+R D Sbjct: 553 IGRLFSSERNNASKTEIVLLITPRIVRNIVAPSLARAD 590 >gi|294667368|ref|ZP_06732586.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602809|gb|EFF46242.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 648 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 110/285 (38%), Gaps = 47/285 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224 +++++ ++ DQV ++ I + +G + ITG++ Sbjct: 359 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNT 417 Query: 225 -----------GPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 G S + A+ G S + + F+ + L A Sbjct: 418 AAQRANEIANTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSA 477 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHF 318 ++ ++ P + + + G + Y T+S +V + + L Sbjct: 478 MQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGGGTGGQSQANVQFKEVLLELKV 537 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 TPT+ + R+ L + + E +N G +P R+ +T V + G T+V+ G+ + Sbjct: 538 TPTITNDNRVFLNMNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYE 597 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 598 FNDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642 >gi|288572884|ref|ZP_06391241.1| general secretion pathway protein D [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568625|gb|EFC90182.1| general secretion pathway protein D [Dethiosulfovibrio peptidovorans DSM 11002] Length = 659 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 124/308 (40%), Gaps = 39/308 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 ++ L+I QV ++ IAEV LK G + G S FAA+ + Sbjct: 347 DIIKQLDI-QPKQVMVRGLIAEVNLTNLKNAGIDWATWGGQVSGSTVFAANAALGGSTGV 405 Query: 243 GDFSVKGVLD---------------------------RFSFETVLHALERATAIRTLAEP 275 V D + L++ A+ L+ P Sbjct: 406 PSTFVDWFQDLSKKETYEWITPETGEPYREKTTVYEGNSLIYAYVQLLKKYDAMNILSMP 465 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIG 329 L + +S G S+S + S D G+ L TP + S + Sbjct: 466 RLMCTDNKESSLMVGQTIPQMKASTSDISNPSSVQNSYDYKDTGLKLKITPHIRSGNLVA 525 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 L I+ E + + + P R+ T+V++ +G TI+L GLLK+ + LK+ +P+LS Sbjct: 526 LDIEQSTEEVLSAMTSTT-PVTAKREVKTSVQVRNGETIILGGLLKETEKSLKQRVPILS 584 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR---PDDHYSVEDDAKAFFF 445 IP++G LF++S RE+ E+ + TP++++ P A + S+ D +A+ Sbjct: 585 YIPLVGELFKSSTNQREKIELMVFLTPYILETPEAATEASKAVAASDTDLGLSEAEIRLN 644 Query: 446 NRVNKIYG 453 R ++Y Sbjct: 645 RRFQEMYR 652 >gi|167564371|ref|ZP_02357287.1| type II/III secretion system protein [Burkholderia oklahomensis EO147] Length = 521 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + + +G A G F Sbjct: 281 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRATGVVAGRNGTLADLTARPIGGF 340 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 341 DAATAGLTLFAARASRLLDVELSALESEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 399 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +G P+ + T Sbjct: 400 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDLDIAKD--SVGEETASGPAIHTKHVQT 457 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 458 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRALRAQRSELVVYITPTV 517 Query: 419 V 419 V Sbjct: 518 V 518 >gi|124268320|ref|YP_001022324.1| general secretion pathway protein D [Methylibium petroleiphilum PM1] gi|124261095|gb|ABM96089.1| general secretion pathway protein D [Methylibium petroleiphilum PM1] Length = 736 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 114/321 (35%), Gaps = 55/321 (17%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAAD 233 + V++ L+ A QV ++ + EV G Q TG G + D Sbjct: 396 RSVIDQLD-ARRAQVYVETMLVEVNATKAADAGIQWQGLIGKDGDKTGLIGGTNFGTGGD 454 Query: 234 ---------------FGGKFVSEGGDFSV-KGVLDRFSFETVLHALERATAIRTLAEPTL 277 G S G + V + ++ + LE L+ P L Sbjct: 455 NIINLSIAAAQGGTAVSGNLPSAGLNLGVIRRFAGVYTLGALARFLETNADGNILSTPNL 514 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRI 328 + + A G + T S ++ T ++ D G+ L P + G + Sbjct: 515 VTLDNEEAKIVVGQNVPFVTGSFTSTGTGSGATNPFQTIERRDVGITLRVKPQIGENGTV 574 Query: 329 GLRIQTEVSEPVIGVNAGDMP------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + I E S V + + R ++TV + G +V+ GL++D Q Sbjct: 575 RMTIYQEASSVVNQNVSQGVADATAGLVTNKRSIESTVVVNDGDILVMGGLMQDQFQDNS 634 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 +P L ++P +GALFR+ R ++ + + P +++ + + A Sbjct: 635 SRVPGLGRLPGIGALFRSDNRTRTKSNLMVFLRPQVMR---------------SAESSNA 679 Query: 443 FFFNRVNKIYGPKEASEVEGQ 463 +R + I ++ S+ E + Sbjct: 680 LSLDRYDLIRAQQQNSQPESR 700 >gi|170723341|ref|YP_001751029.1| general secretion pathway protein D [Pseudomonas putida W619] gi|169761344|gb|ACA74660.1| general secretion pathway protein D [Pseudomonas putida W619] Length = 650 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 62/335 (18%), Positives = 117/335 (34%), Gaps = 38/335 (11%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY- 176 + + LR + + E + G + A + + G N Sbjct: 275 ANAGEVVKVLRGLSQEGGVPSEGAGE-----GEAKDKPVMAAASDSGIRLEYEEGTNAVV 329 Query: 177 ------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 ++ + ++ L+I QV ++ IAEV +++G Q G Sbjct: 330 MVGPDSELAAYRSIVEQLDIR-RAQVVVEAIIAEVSDSRAQELGVQWLFADEKFGAGIVN 388 Query: 231 AADFGGKF--------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 G + G + F+F +++AL+ + Sbjct: 389 FGSNGVNIANIAGAAASGDNEALGDLLSATTGVTAGIGHFGGGFNFAMLINALKGKSGFN 448 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPG 326 L+ PTL + AS G + + T S + ++ + GV L P + Sbjct: 449 LLSTPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDN 508 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + L I EVS A D+ + R+ T V + G ++L GL+ D++ + +P Sbjct: 509 SVRLDIVQEVSSIADSSAASDVIT-NKREIKTKVMVEDNGLVILGGLISDELSTSDQRVP 567 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L IP LG LFR+ + + + P +++ Sbjct: 568 FLGDIPGLGRLFRSEASKNTKQNLMVFIRPRILRD 602 >gi|71066434|ref|YP_265161.1| fimbrial assembly protein PilQ [Psychrobacter arcticus 273-4] gi|71039419|gb|AAZ19727.1| fimbrial assembly protein PilQ [Psychrobacter arcticus 273-4] Length = 756 Score = 170 bits (430), Expect = 6e-40, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 99/246 (40%), Gaps = 8/246 (3%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 K++ ++I QV ++ I K++G + I + + Sbjct: 514 KLIGKIDIP-VRQVMIEARIVSASDSFSKELGVRWGILFDGKPDDNRLTSSGLNVDLGIS 572 Query: 243 GDFSVKGVLDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 SV + + S + L A++ ++ P + Q+A +SG Q Y+ S Sbjct: 573 NPASVAFGILKVSDVMLDLELLAMQADNRGEVISTPKILTSDKQTAKISSGTQIPYQEAS 632 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 +S GAT+ + + + L TP + G+IGL++ P I + + T Sbjct: 633 AS-GATTTSFKEAALSLEATPNITPDGKIGLQLLITNGTPTI---INNQVAIAEDSISTN 688 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V + G TIVL G+ K+ + +P L +P +G FR + + E+ I TP L+ Sbjct: 689 VIVEDGQTIVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRKDVRSNTKEELLIFITPKLI 748 Query: 420 KPVAMR 425 R Sbjct: 749 NDGISR 754 >gi|116688415|ref|YP_834038.1| type IV pilus secretin PilQ [Burkholderia cenocepacia HI2424] gi|116646504|gb|ABK07145.1| type IV pilus secretin PilQ [Burkholderia cenocepacia HI2424] Length = 543 Score = 170 bits (430), Expect = 6e-40, Method: Composition-based stats. Identities = 85/434 (19%), Positives = 152/434 (35%), Gaps = 42/434 (9%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P + PP + ++AA D + + +++ + + L D Sbjct: 87 GPPIPLAPPARMSDAAARQPGDADDARRISLNL---QGVGLAAAFDAIARFTGLNIVVGE 143 Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL--DILIERDIAHLEMTLRRFIADSNIR 137 V T+ L +A L+ G M I + A L R Sbjct: 144 QVRGTVTLRLNNVRWREAFDTLLDTHGLAMSRRGNVIWVTP-AAELAARERERFEMHARA 202 Query: 138 VEM---VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG-- 192 ++ S T VLH QD QR + + S R A ++ + ++A Sbjct: 203 ADLEPLASRTFVLH--YPRAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRI 260 Query: 193 -------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---SKSFAADF-- 234 QV ++ I E + + +G + ++ P SF A+ Sbjct: 261 TQIAGLIDAIDRPSRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPAAEGASFTANARN 320 Query: 235 --------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 G F + F++ + L ALE + ++ P + A Sbjct: 321 ALDLAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAI 380 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 G + Y+ G + V + L P + GR+ L + +V++ +G Sbjct: 381 VEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTA 437 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P+ + T VE+ +GGT+ + G+ + + +PLL KIP LGALFR+ + Sbjct: 438 AGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQ 497 Query: 407 ETEIFIAATPFLVK 420 E+ + TP +V Sbjct: 498 RNELVVFITPTVVD 511 >gi|157738059|ref|YP_001490743.1| general secretion pathway protein D [Arcobacter butzleri RM4018] gi|157699913|gb|ABV68073.1| general secretion pathway protein D [Arcobacter butzleri RM4018] Length = 478 Score = 170 bits (430), Expect = 6e-40, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 112/239 (46%), Gaps = 14/239 (5%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGK-------FVSEGGDF 245 QV ++ I EV +++ +IG + I +S S + +++ G + G Sbjct: 175 QVYVQAKIIEVNNELVNKIGISYGIINASARSDGINAISSNLNGGSNAIKEAVDTLGIRM 234 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA- 304 S + + L+ L++ A+ ++EP++ AI + +S G + + S+ T Sbjct: 235 SDVNIKSGLALGASLNLLQQNGALDIVSEPSILAIDNKESSIYVGEKISVEISSTLTDGG 294 Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTV 360 T+ D G+ L P + S ++ L I T + V+AG P ++ T Sbjct: 295 LQRTNYEREDIGLTLKVKPRISSDTKLTLEINTLLEGIKSTSVSAGQNPDTLKKEIKTAA 354 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L +G ++++ GL+++ + +++ +P+L IP+ G LF+N ++ + I TP+++ Sbjct: 355 ILNNGESVIIGGLIENKNETIEQKVPVLGDIPLFGELFKNDSKMNKKNNLVIIVTPYMI 413 >gi|89093859|ref|ZP_01166805.1| putative MSHA biogenesis protein MshL [Oceanospirillum sp. MED92] gi|89081989|gb|EAR61215.1| putative MSHA biogenesis protein MshL [Oceanospirillum sp. MED92] Length = 524 Score = 170 bits (430), Expect = 6e-40, Method: Composition-based stats. Identities = 64/260 (24%), Positives = 106/260 (40%), Gaps = 20/260 (7%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGK 237 ++ + ++ + QV ++ I EV + Q G SI G SG + +F G Sbjct: 239 ATVRDYLSQAELILHRQVVIEAKILEVTLNNGFQAGVNWSILGEPGSGNTANFTQSSVGL 298 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + K L F V+ L ++ L+ P ++ ++ Q A G + T Sbjct: 299 TNQDAIGGIFKADLSIGDFSAVIELLGSQGDVQVLSSPRVSTVNNQKAVIKVGTDEFFVT 358 Query: 298 VSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------- 340 +T + +T G+ L TP + + G I L I VSE V Sbjct: 359 EVENTTTTGTSTTTSPSIELTPFFSGIALDVTPQISANGDIVLHIHPTVSEVVDQQKQIS 418 Query: 341 IGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 +G + ++P +R++D+ V SG IV+ GL+K + P L IP +G LF Sbjct: 419 VGTDDFNIPLALSSIRESDSIVRAESGQVIVIGGLMKSSDSDTQAKTPGLGDIPGVGNLF 478 Query: 399 RNSRFNREETEIFIAATPFL 418 + R +TE+ I P L Sbjct: 479 KQKRQAGSKTELVIMLRPVL 498 >gi|127514547|ref|YP_001095744.1| general secretion pathway protein D [Shewanella loihica PV-4] gi|126639842|gb|ABO25485.1| general secretion pathway protein D [Shewanella loihica PV-4] Length = 707 Score = 170 bits (430), Expect = 6e-40, Method: Composition-based stats. Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 47/284 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----------------------- 218 + V+N L+I QV ++ I EV G Q + Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 396 Query: 219 -------ITGSSSGPSKSFA--------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + S +G + D + G + + F ++ A+ Sbjct: 397 WAAQDEKASNSCTGSGDNLTCTDNPDKKGDITLLAQALGKVNGMAWGVAMGDFGALIQAV 456 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLH 317 T LA P++T + Q ASF G + T S ++ +V + GV L Sbjct: 457 SSDTKSNVLATPSITTLDNQEASFIVGDEVPVLTGSQNSSNGNSNPFQTVERKEVGVKLK 516 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + + L I+ EVS I G ++ R+ TTV SG +VL GL+ ++ Sbjct: 517 VVPQINEGTTVKLTIEQEVSG--INGKTGVDVTFATRRLTTTVMADSGQIVVLGGLINEE 574 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +Q+ + +P L IPILG LF++S +++ + + P +++ Sbjct: 575 VQESVQKVPFLGDIPILGHLFKSSSSGKKKKNLMVFIKPTIIRD 618 >gi|167625758|ref|YP_001676052.1| pilus (MSHA type) biogenesis protein MshL [Shewanella halifaxensis HAW-EB4] gi|167355780|gb|ABZ78393.1| pilus (MSHA type) biogenesis protein MshL [Shewanella halifaxensis HAW-EB4] Length = 557 Score = 170 bits (430), Expect = 6e-40, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 26/264 (9%) Query: 182 KKVMNLLNIAG---EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 +++ N + A + QV L+ + EV Q G +G + Sbjct: 270 RQIRNFIKTAESHLQRQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDITFGTSPTTG 329 Query: 239 VSEGGDFSVKGV----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +S+ + GV L+ F T++ L+ + L+ P +TA + Q A G Sbjct: 330 LSDQISSVLGGVTSIKLEGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEY 389 Query: 295 YKTVSSSTG---ATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV-------S 337 + T SST T +TT D G+ L TP + G + L I V Sbjct: 390 FVTNVSSTTVASNTPITTPDVELTPFFSGIALDVTPQIDEQGNVLLHIHPSVIDIKEQTK 449 Query: 338 EPVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 I + ++P +R++DT ++ SG +V+ GL+K + ++ +PLL IP LG Sbjct: 450 IIKISGSTLELPLAQSEIRESDTVIKAASGDVVVIGGLMKSENTEIVSKVPLLGDIPFLG 509 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 F N + +TE+ I P +V Sbjct: 510 EAFTNRANSTVKTELVILLKPIVV 533 >gi|167571519|ref|ZP_02364393.1| type II/III secretion system protein [Burkholderia oklahomensis C6786] Length = 555 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + + +G A G F Sbjct: 315 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRATGVVAGRNGTLADLTARPIGGF 374 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 375 DAATAGLTLFAARASRLLDVELSALESEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 433 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +G P+ + T Sbjct: 434 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDLDIAKD--SVGEETASGPAIHTKHVQT 491 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 492 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRALRAQRSELVVYITPTV 551 Query: 419 V 419 V Sbjct: 552 V 552 >gi|42523102|ref|NP_968482.1| general secretion pathway protein D [Bdellovibrio bacteriovorus HD100] gi|39575307|emb|CAE79475.1| general secretion pathway protein D [Bdellovibrio bacteriovorus HD100] Length = 765 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 65/346 (18%), Positives = 125/346 (36%), Gaps = 36/346 (10%) Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + ++ D + TL+ D+ + + G + +Q Q Sbjct: 364 VYVYNVR-HGDAEKIAQTLQGVTKDAAPKPATGGSLLSPLGS-QGMQAPQEIFGGDVKIT 421 Query: 169 SQSGRNQYANSSSKK----VMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + N ++SK+ V+N+L+ DQV ++ I E+ + G + G Sbjct: 422 ADKTTNSLIVTASKQDYDVVLNILSKIDTPRDQVFVEAIIMEMSVNDGNSWGIGYYQYGD 481 Query: 223 SSGPSKSFA--ADFGGKFVSEGGDFSVKGVLDR----------------FSFETVLHALE 264 S F ++ GG +V G S ++ L+ Sbjct: 482 SGYGKVGFNGLSNINDFLSPTGGSGAVIGFGQGKTVEVTDPVSKTTLKIPSLLGFINFLK 541 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFT 319 A L+ P L + Q G + + + G + T D + L Sbjct: 542 TAKKANILSTPQLMTLDNQEGELEVGDKVVVGENVQNVGTSGTTVRTPQFEDATIKLAIK 601 Query: 320 PTVLS-PGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 P + +I + I+ +V++ R T + + +G T+VL GL+ Sbjct: 602 PFISPASNQIRMEIKQQVAQLSTASTPKAFQDSTQPLAKRSLKTVINVNNGDTVVLGGLM 661 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 K+ Q+ +PLL IPI+G LF++ +++T + + TP +V+ Sbjct: 662 KEQDQESVTKVPLLGDIPIIGWLFKSRTIVKDKTNMVVFLTPKIVR 707 >gi|218778338|ref|YP_002429656.1| type IV pilus secretin PilQ [Desulfatibacillum alkenivorans AK-01] gi|218759722|gb|ACL02188.1| Type IV pilus secretin PilQ [Desulfatibacillum alkenivorans AK-01] Length = 844 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 112/264 (42%), Gaps = 28/264 (10%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPS------------ 227 ++ +++ L+ QV ++ + E + + IG + +G G S Sbjct: 580 ARDIVSRLDRVTA-QVQIEARVVEAQTTFSRSIGLAWNGESGIQPGDSREGVGPQRGYDV 638 Query: 228 --KSFAADFGGKFVSE---------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 ++ ++ + +E G +FS L S L+A E I+ ++ P Sbjct: 639 LGGTYGYNWSVNYPTETDDYGNNTFGFNFSRLLGLTPLSLNATLNAAESRGEIKIVSSPK 698 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + + + A+ G + K G T + + L TP V R+ +++ E Sbjct: 699 IRTLDNKPATIKQGIDYPIKQF-DGDGNTVIVYKAVDLQLEVTPHVTQDRRVSMKMTVEK 757 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +G + S+ ++ DT + + G T+V+ G++K + +G P L +P+LG Sbjct: 758 N--DVGAVISEEQSFNTKEVDTELLVNDGDTVVIGGIIKTTFRDDVDGWPGLIDVPVLGW 815 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 LF++S + E E+ + TP +V+ Sbjct: 816 LFKDSTKSEEREELLVFITPTIVE 839 >gi|76809042|ref|YP_335094.1| type II/III secretion system protein [Burkholderia pseudomallei 1710b] gi|76578495|gb|ABA47970.1| type II/III secretion system protein [Burkholderia pseudomallei 1710b] Length = 575 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G AA F Sbjct: 335 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 394 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 395 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 453 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 454 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 511 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 512 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 571 Query: 419 V 419 V Sbjct: 572 V 572 >gi|134283134|ref|ZP_01769835.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 305] gi|134245329|gb|EBA45422.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 305] Length = 575 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G AA F Sbjct: 335 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 394 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 395 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 453 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 454 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 511 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 512 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 571 Query: 419 V 419 V Sbjct: 572 V 572 >gi|167838164|ref|ZP_02465023.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 572 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G A G F Sbjct: 332 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRATGIVAGRNGTLADLTARPIGGF 391 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L LE + ++ P + A G + Y+ Sbjct: 392 DAATAGLTLFAARASRLLDVELSVLEAQGRGQIVSSPRVVTADRTKAIVEQGAELPYQ-A 450 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +G P+ + T Sbjct: 451 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDLDIAKD--SVGEETASGPAIHTKHVQT 508 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 509 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 568 Query: 419 V 419 V Sbjct: 569 V 569 >gi|83720708|ref|YP_443529.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|257137686|ref|ZP_05585948.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|83654533|gb|ABC38596.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 576 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + + +G A F Sbjct: 336 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGF 395 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 396 DAATAGLTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 454 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 455 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 512 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 513 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 572 Query: 419 V 419 V Sbjct: 573 V 573 >gi|188026465|ref|ZP_02962178.2| hypothetical protein PROSTU_04276 [Providencia stuartii ATCC 25827] gi|188019786|gb|EDU57826.1| hypothetical protein PROSTU_04276 [Providencia stuartii ATCC 25827] Length = 348 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 106/235 (45%), Gaps = 9/235 (3%) Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 L++ + QV + I R L+++G + + S S+ + ++ S G F+ Sbjct: 119 QLDVP-KQQVQITAHIISSSRTALQELGLEWGMLSGSPNNSRYQRYN---RYDSSSGQFN 174 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + + + +ALE+ + +A P L A AS G + Y T S+ T Sbjct: 175 LLRLGEGLLELKL-NALEKENLLSIIASPRLMASHKHPASIQQGSEIPYVT--STEKKTH 231 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPS 364 V D + + TPT+ + L ++ + P + D + ++ T+V + + Sbjct: 232 VQFKDAVLGMEVTPTLSRGDHVELLLKISHNSPDKAITTSDEHYLAINKQEIATSVTIRN 291 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L G+ + ++ + G+P LS IP+LG LF N+ + + + + TP L+ Sbjct: 292 NETLILGGIFQQKQEKTETGLPFLSNIPLLGKLFTNTGEHIDRRVLVVFITPKLI 346 >gi|254357308|ref|ZP_04973582.1| type IV pilus secretin PilQ [Burkholderia mallei 2002721280] gi|148026372|gb|EDK84457.1| type IV pilus secretin PilQ [Burkholderia mallei 2002721280] Length = 552 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G AA F Sbjct: 312 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 371 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 372 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 430 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 431 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 488 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 489 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 548 Query: 419 V 419 V Sbjct: 549 V 549 >gi|237653194|ref|YP_002889508.1| general secretion pathway protein D [Thauera sp. MZ1T] gi|237624441|gb|ACR01131.1| general secretion pathway protein D [Thauera sp. MZ1T] Length = 728 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 105/277 (37%), Gaps = 39/277 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--------- 232 + V++ L+ QV ++ IAE+ + + GFQ + G+S+G A Sbjct: 396 RAVIDQLDRR-RAQVYIEALIAEISTERAAEFGFQW-VAGASAGEVGVLGAQLFNSGGGN 453 Query: 233 -----------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + G V GG +V G+ + S + LE + L+ P Sbjct: 454 LGQLIAGSADRTRLTLPNNGLNLVVGGGKVNVPGIGEVLSLGVLARFLENEVSANILSTP 513 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPG 326 L + + A G + T + ++ D G+ LH P + G Sbjct: 514 NLITLDNEEARIVVGRNLPFVTGQYANTGGGTTPANPFQTIERRDVGLTLHVKPQISEGG 573 Query: 327 RIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 I L+I E S V A R ++ V + G + L GL++D +E Sbjct: 574 AIRLQIYQEASAVVGSAESAAAGNSVTTKRSIESMVLVDDGAILALGGLVEDSYSGGEEK 633 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P+L +P G+LFR R +T + + P +++ Sbjct: 634 VPVLGDLPFAGSLFRYDTRKRAKTNLVVFLRPVILRD 670 >gi|171060101|ref|YP_001792450.1| general secretion pathway protein D [Leptothrix cholodnii SP-6] gi|170777546|gb|ACB35685.1| general secretion pathway protein D [Leptothrix cholodnii SP-6] Length = 753 Score = 169 bits (429), Expect = 8e-40, Method: Composition-based stats. Identities = 65/315 (20%), Positives = 119/315 (37%), Gaps = 45/315 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------TGSS 223 + V++ L+ A QV ++ I ++ + GFQ TG + Sbjct: 397 RGVIDQLD-ARRAQVYVESMIVKMDATQAAEFGFQWQGLLGQSGDRYGLVAGTNFGTGGN 455 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISG 282 + + S A G G + + ++ ++ + LE T L+ P L A+ Sbjct: 456 NIVNLSVGAATGAALPGAGLNVGLLKAINGVYTLGALARFLESNTGANVLSTPNLIALDN 515 Query: 283 QSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + A G + T S + T ++ D G+ L P + G + + I Sbjct: 516 EEAKIVIGQNVPFVTGSFTNTGTSNGSANPFQTIERKDVGLTLRVKPQIGEGGTVRMVIY 575 Query: 334 TEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 E S V P+ +TTV + G +VL GLLKDD ++ +P L+ IP Sbjct: 576 QENSSVVANTTTNSAGPTTDKSAIETTVVVDDGSIMVLGGLLKDDYGSGEDRVPGLASIP 635 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 ++G LFR+ R ++ + + P +++ + DA A +R + I Sbjct: 636 LIGGLFRSENRKRTKSNLLVFLRPVVMR---------------SQQDANALTLDRYDAIR 680 Query: 453 GPKEASEVEGQNYKG 467 + + + G Sbjct: 681 AQQMNEQPKPSTVLG 695 >gi|78046312|ref|YP_362487.1| type II secretory pathway protein D [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034742|emb|CAJ22387.1| type II secretory pathway protein D [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 689 Score = 169 bits (429), Expect = 8e-40, Method: Composition-based stats. Identities = 77/427 (18%), Positives = 152/427 (35%), Gaps = 65/427 (15%) Query: 100 ILIGHDGKQMLNLDILIER----DIAHLEMTLRRFIADSNIRVEMVS--------DTVVL 147 + DG+ D+ + R L L++ + + D Sbjct: 242 TAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQDTRSTAMDVAAA 301 Query: 148 HGMVRTIQDSQRA------VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 G +T + A V + + + V+ L++ +QV ++ Sbjct: 302 SGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDVH-REQVLVEAI 360 Query: 202 IAEVRRDILKQIGFQHSITGSS----------SGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + E+ K++G Q + G + SG S + G+ VL Sbjct: 361 VVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGTRSGNADDDSVL 420 Query: 252 -------------------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + F ++ A++ T L+ P++ + + A Sbjct: 421 EQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNEQAR 480 Query: 287 FTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 G + T ++ ++ D GV L P + + G I L I+ EVS Sbjct: 481 ILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSAIAG 540 Query: 342 GVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 V+A + R+ +T V + +G + L GLL + +Q E +PLL +P LGALFR+ Sbjct: 541 PVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRH 600 Query: 401 SRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY----SVEDDAKAFFFNRVNKIYGPK 455 NR++T + + P +++ A + ++ P +Y + D + + + Y Sbjct: 601 KSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYNYLRERQLADGDPEAALDALVRDYLRA 660 Query: 456 EASEVEG 462 + ++ Sbjct: 661 QPPQLPA 667 >gi|283851919|ref|ZP_06369195.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] gi|283572643|gb|EFC20627.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] Length = 542 Score = 169 bits (429), Expect = 8e-40, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 120/298 (40%), Gaps = 23/298 (7%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDI 209 + +D ++++ S + ++ +V N+L + QV++ + EV D Sbjct: 222 KDGKDGSASLQILPLKGSNTVVVTALPAAQSQVANILANMDKRTPQVSISAMLVEVILDE 281 Query: 210 LKQIGFQHSITGSSSGPSKS-FAADFGGKFVSEGGDFSVKG----------------VLD 252 ++G + SS + + FA D K + G + + Sbjct: 282 SSKMGLDWKLRAWSSNKAYNEFAQDTLAKTLETGSQSASANLAKYSDAGTKAAMFFNIFP 341 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVT 308 ++H + T + L+ P L Q AS + G + Y+T +++ + + Sbjct: 342 GGYLSMLVHMISSDTNAKILSSPHLLVADNQEASISLGREIPILKEYRTDTNNDPIKTYS 401 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 +G+ L TPT+ G + L++ ++S D R ADTTV + T+ Sbjct: 402 QRTFGLELKMTPTIADNGDVTLKVSQKLSNLDEQDTTNDTYKASERTADTTVVVHDKQTL 461 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 V+ GL ++ G P KIP+LG LF ++++ E+ + TP +V+ D Sbjct: 462 VIGGLTMQTDEKEDSGTPTARKIPVLGYLFGTKSTSKQKRELLLFITPTVVRDPIQAD 519 >gi|167620691|ref|ZP_02389322.1| type II/III secretion system protein [Burkholderia thailandensis Bt4] Length = 572 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + + +G A F Sbjct: 332 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGF 391 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 392 DAATAGLTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 450 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 451 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 508 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 509 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 568 Query: 419 V 419 V Sbjct: 569 V 569 >gi|312795821|ref|YP_004028743.1| Fimbrial assembly protein pilQ precursor [Burkholderia rhizoxinica HKI 454] gi|312167596|emb|CBW74599.1| Fimbrial assembly protein pilQ precursor [Burkholderia rhizoxinica HKI 454] Length = 655 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 98/251 (39%), Gaps = 27/251 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------------------- 229 QV ++ I E + +G + ++ G S + Sbjct: 304 RPTRQVLIEARIVEADDGFSRALGARVAMLKRDGGDSPTSSGEMASQGNTGAGLRGPMVD 363 Query: 230 -FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 AA G + G + + R + L+ALE R ++ P + A Sbjct: 364 LLAAPLSGFAPASAGIGLLSASVSRL-LDIELNALEMQGRGRVVSSPRVITADRFKAVVE 422 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 G + Y+T + ++V + L P + G + L + +G Sbjct: 423 QGAEVPYQTRTQR--GSAVQFRRATLKLEVEPRITPRGHVILDLDIVKD--SVGSETLHG 478 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ ++ T+VE+ +GGT+ + G+ D +Q + +P+L IP++GALFR+ + + Sbjct: 479 PAIHTKRVQTSVEVENGGTVAIGGIYSQDDRQDEARVPILGDIPLIGALFRHRIRSDRHS 538 Query: 409 EIFIAATPFLV 419 E+ I TP +V Sbjct: 539 ELIILITPTVV 549 >gi|110835094|ref|YP_693953.1| fimbrial assembly protein pilQ [Alcanivorax borkumensis SK2] gi|110648205|emb|CAL17681.1| Fimbrial assembly protein pilQ precursor [Alcanivorax borkumensis SK2] Length = 723 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 70/342 (20%), Positives = 118/342 (34%), Gaps = 19/342 (5%) Query: 89 LFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFIADSNIRVEMV---SDT 144 L G+ ++ G + + LI +D +R I +I V+ V + Sbjct: 389 LISNAGGKGEALVSGRGSVVVDQRTNTLIVQDTQAKLQEIRELIDQLDIPVQQVLIEARV 448 Query: 145 VVLHGMVRTI-QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 VV V + + + GR + + + NL Q + TIA Sbjct: 449 VVATNDVTDEFGVRWGGLGFDTESMLEDGRTFGVSGRLQSLRNL------HQTNIDATIA 502 Query: 204 EVRRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 + + D G S L E L Sbjct: 503 YPDTVGGHPGDVEFGPDDFQFQEAENDDDLIVDLGVDSASASRFAVGFTSLASGLIELEL 562 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ALE +A P + Q A SG Q ++ +SS GATS+ + + L TP Sbjct: 563 SALEAEGHGELVATPKVLTADQQPAVIASGQQVPFEIATSS-GATSIDFVEAELRLEVTP 621 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + G I + ++ ++ + + +T+V + G T+VL G+ + + Sbjct: 622 HITPDGNIIMMLKVNND----SFSSDGSAAINTNRVETSVLVNDGETVVLGGIFQQEKIN 677 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 P L +P +GALFR + + E+ I TP L+K Sbjct: 678 SVTKTPFLGDLPWIGALFRKTVNRDNKQELLIFITPRLMKDA 719 >gi|53724296|ref|YP_104266.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|52427719|gb|AAU48312.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] Length = 527 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G AA F Sbjct: 287 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 346 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 347 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 405 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 406 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 463 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 464 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 523 Query: 419 V 419 V Sbjct: 524 V 524 >gi|260775597|ref|ZP_05884494.1| MSHA biogenesis protein MshL [Vibrio coralliilyticus ATCC BAA-450] gi|260608778|gb|EEX34943.1| MSHA biogenesis protein MshL [Vibrio coralliilyticus ATCC BAA-450] Length = 545 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 122/328 (37%), Gaps = 38/328 (11%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 ++E ++ G +++ + +A ++ R + + + QV Sbjct: 214 QLEQAVSQLIGSGQGQSVVITPQAGVITVRAFPDEIRE------VRSFIGVSQQRLHRQV 267 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------KSFAADFGGKFVSEGGDF 245 L+ I EV Q G S +S+G + + A G + Sbjct: 268 ILEAKILEVTLSDGYQQGIDWSKAFTSNGTNYTIGQGTPTTTGTPATLPGLDTIGTLLGG 327 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302 V+ SF+ V+ + + L+ P +TA + Q A G + T S+ Sbjct: 328 QTNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDSYFVTDFSTNVDT 387 Query: 303 --------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-------EVSEPVIGVNAGD 347 +T G+ L TP + + G + L + E E G + Sbjct: 388 SSTTSTTSTDIELTPFFSGISLDVTPQIDNDGSVLLHVHPAVIDVTEENKEITNGTSTVS 447 Query: 348 MP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P + +R++D+ + G +V+ GL+K + +P L +P LG LFRN+ Sbjct: 448 LPLATSSIRESDSVIRAQDGDVVVIGGLMKSNTLDRTSKVPFLGDVPALGHLFRNTTQYT 507 Query: 406 EETEIFIAATPFLVK-PVAMRDLSRPDD 432 E+TE+ I P +V +++ R D Sbjct: 508 EKTELVILLKPTVVGVNTWQKEIERSRD 535 >gi|609625|gb|AAA58785.1| EpsD [Vibrio cholerae] Length = 674 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 68/374 (18%), Positives = 135/374 (36%), Gaps = 71/374 (18%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181 + L+R I ++ + + V++ +D ++ +SE ++ G Q S Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKR 304 Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216 +VM N L + QV ++ I E+ +G Q Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364 Query: 217 HSI-----------TGSSSGP----------------------------SKSFAADFGGK 237 TG+S G + + D+ Sbjct: 365 WGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKL 424 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + + +++A+ ++ L+ P++T + ASF G + T Sbjct: 425 ASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVIT 484 Query: 298 VSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 S++ +V + G+ L P + + L I+ EVS V+G N + Sbjct: 485 GSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFA 543 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR++ E+ + + Sbjct: 544 KRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV 603 Query: 413 AATPFLVKPVAMRD 426 P +++ D Sbjct: 604 FIKPTIIRDGVTAD 617 >gi|167587730|ref|ZP_02380118.1| type IV pilus secretin PilQ [Burkholderia ubonensis Bu] Length = 499 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 58/289 (20%), Positives = 114/289 (39%), Gaps = 19/289 (6%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIA 203 +L G S+R +++ +Q A ++ +++ ++ QV ++ I Sbjct: 182 LLTGAAGQRLLSKRGAAAADSRTNQLFVTDLAPRIAQIAGLIDAIDRP-SRQVRIEARIV 240 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKS-------------FAADFGGKFVSEGGDFSVKGV 250 E + + +G + ++ + AA G F + F++ Sbjct: 241 EGEQGFSRNLGARLALRARERAAAADGAAFAAGARNALDLAARPLGGFDAATAGFTLFAA 300 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + L ALE + ++ P + A G + Y+ G + V Sbjct: 301 PLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKAIVEQGAELPYQ-AKVGNGVSGVQFR 359 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + L P + GR+ L + +V++ +G P+ + T VE+ GGT+ + Sbjct: 360 RATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVEDGGTVAI 417 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ + + +PLL KIPILGALFR+ + +E+ + TP +V Sbjct: 418 GGIYEQLRRDDVTRVPLLGKIPILGALFRHRAQRDQRSELVVFITPTVV 466 >gi|21241466|ref|NP_641048.1| type II secretion system protein D [Xanthomonas axonopodis pv. citri str. 306] gi|21106808|gb|AAM35584.1| type II secretion system protein D [Xanthomonas axonopodis pv. citri str. 306] Length = 692 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 78/428 (18%), Positives = 153/428 (35%), Gaps = 65/428 (15%) Query: 100 ILIGHDGKQMLNLDILIER----DIAHLEMTLRRFIADSNIRVEMVS--------DTVVL 147 + DG+ D+ + R L L++ + + V D Sbjct: 245 TAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQVGQDTRLATIDVAAA 304 Query: 148 HGMVRTIQDSQRA------VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 G +T + A V + + + V+ L++ +QV ++ Sbjct: 305 SGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDVH-REQVLVEAI 363 Query: 202 IAEVRRDILKQIGFQHSITGSS----------SGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + E+ K++G Q + G + SG S + G+ VL Sbjct: 364 VVEISDTAAKRLGVQLLLAGRNGTVPLVATQYSGASPGIVPLAAAAAGTRSGNADDDSVL 423 Query: 252 -------------------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + F ++ A++ T L+ P++ + + A Sbjct: 424 EQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNEQAR 483 Query: 287 FTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 G + T ++ ++ D GV L P + + G I L I+ EVS Sbjct: 484 ILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSAIAG 543 Query: 342 GVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 V+A + R+ +T V + +G + L GLL + +Q E +PLL +P LGALFR+ Sbjct: 544 PVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRH 603 Query: 401 SRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY----SVEDDAKAFFFNRVNKIYGPK 455 NR++T + + P +++ A + ++ P Y + D + + + Y Sbjct: 604 KSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYTYLRERQLADGDPEAALDALVRDYLRA 663 Query: 456 EASEVEGQ 463 + ++ + Sbjct: 664 QPPQLPAR 671 >gi|217977094|ref|YP_002361241.1| general secretion pathway protein D [Methylocella silvestris BL2] gi|217502470|gb|ACK49879.1| general secretion pathway protein D [Methylocella silvestris BL2] Length = 805 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 79/357 (22%), Positives = 143/357 (40%), Gaps = 53/357 (14%) Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + I + +++VV+ +Q + + E L Q R + Sbjct: 483 LLPGVRIMADAANNSVVI-------YANQESYRIIEKALEQLDRPKL------------- 522 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----ADFGGKFVSEGGDF 245 QV + +TIAEV + G Q + S+ G + G GG Sbjct: 523 -----QVAIDLTIAEVTLNDTLNYGVQFFLGSSNLGLGANNGFVTNTAAGVPLAQTGGVA 577 Query: 246 SVKGVLDRFSFE--------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 S G L F+ +++AL + T ++ L+ P+L + Q A+ G + +T Sbjct: 578 SAAGTLPGFNLTIGNALSPRAIINALHQYTDVKVLSNPSLVVVDNQVATLQVGDEIPIQT 637 Query: 298 VS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 S ++ ++ + G++L P V G + L ++ E+S G P++ Sbjct: 638 GSATVLSANNAVVNTIDYKNTGIILRVQPRVNFNGNVSLDVEQEISNQAGTSALG--PTF 695 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEI 410 RK +++ + SG T++LAGL+ D + K GIP+ +IP+LG LF NS TE+ Sbjct: 696 SQRKVKSSILVASGQTVLLAGLISDGVNGTKAGIPVADQIPVLGNLFNNSSNRLVSRTEL 755 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467 I P +++ D + E+ N+V IY + + + + Sbjct: 756 IIFIRPQIIRDGV-------DASFVAEELRSKLRGNKVGDIYPTGAVTPIPLRALQQ 805 >gi|59710966|ref|YP_203742.1| MSHA biogenesis protein MshL [Vibrio fischeri ES114] gi|59479067|gb|AAW84854.1| MSHA biogenesis protein MshL [Vibrio fischeri ES114] Length = 546 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 104/271 (38%), Gaps = 31/271 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + QV L+ + EV Q G S +S G + G G L Sbjct: 267 QRQVILEAKLLEVTLSDGYQQGINWSNLTASLGGTDVVFGQTSGLVQGALPGMDTIGTLL 326 Query: 252 --------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSST 302 +F+ VL ++ + L+ P +TA + Q A G Y T VSS T Sbjct: 327 GGQTNITVSDGNFQAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGRDEYYVTEVSSVT 386 Query: 303 GA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIG 342 G+ ++T G+ L TP + G + L + V + V G Sbjct: 387 GSGDNSNASPEVTLTPFFSGISLDVTPQIDDKGNVMLHVHPSVIDVENEVKEIDLGDVGG 446 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 V + +R++D+ + SG +V+ GL+K +PLL +P LG LFRN Sbjct: 447 VLKLPLAKSSIRESDSVIRAKSGDVVVIGGLMKSQTVDQVSKVPLLGDVPALGHLFRNVS 506 Query: 403 FNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 ++TE+ I P +V +L R D Sbjct: 507 QLTQKTELVILLKPTVVGVDTWQEELERSRD 537 >gi|83859119|ref|ZP_00952640.1| general secretion pathway protein D [Oceanicaulis alexandrii HTCC2633] gi|83852566|gb|EAP90419.1| general secretion pathway protein D [Oceanicaulis alexandrii HTCC2633] Length = 661 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 122/309 (39%), Gaps = 49/309 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-------------- 227 ++V++ L++ QV ++ + E+ + +G Q + G + Sbjct: 321 EQVISRLDVRRP-QVQVEAIVVEISDQTARDLGVQFLLAGDGDDATPFAYTRYGSTRQPD 379 Query: 228 --------KSFAADFGGKFVSEGGDFSVKGVL-------------------DRFSFETVL 260 + G + D +++ + D F ++ Sbjct: 380 LLALTGALLTGGLSSGDGETTSSTDVNLRNLALSSLVNSRGGSFGFGGELNDGSLFGVIV 439 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTHDYGVV 315 +AL+ T L++P L + + A+ G + T + S + GV Sbjct: 440 NALDSDTDSNVLSKPQLMVLDNEEANLMVGQEIPITTGETLGSNNSNPFRQIERESVGVQ 499 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-RKADTTVELPSGGTIVLAGLL 374 L+ P + I L+I+ EVS V+A + RK +TTV G IVL GL+ Sbjct: 500 LYVRPQINDGDAIRLQIRQEVSSVAGPVSADFVELITNQRKIETTVLADDGEIIVLGGLI 559 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDH 433 + D Q+ + G+P LS+IP G LFRN + + + P +V+ A MRD++R Sbjct: 560 ETDEQEAESGVPGLSRIPGAGRLFRNDSRSTTRRNLMVFIRPTIVRDAASMRDVTRMSYD 619 Query: 434 YSVEDDAKA 442 Y+V +A Sbjct: 620 YAVGQQREA 628 >gi|134294486|ref|YP_001118221.1| type IV pilus secretin PilQ [Burkholderia vietnamiensis G4] gi|134137643|gb|ABO53386.1| type IV pilus secretin PilQ [Burkholderia vietnamiensis G4] Length = 550 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 101/250 (40%), Gaps = 17/250 (6%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------SGPSKS 229 ++++ ++ QV ++ I E + + +G + ++ + + Sbjct: 272 ELIDAID-RASRQVRIEARIVEGEQGFSRNLGARVALRAHGRAPAADGAAAATDTRNALD 330 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 A G F + F++ + L ALE + ++ P + A Sbjct: 331 LTARAIGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQ 390 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 G + Y+ G + V + L P + GR+ L + +V++ IG P Sbjct: 391 GSEVPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGP 447 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + T VE+ GGT+ + G+ + + +PLL +IP+LGALFR+ + + E Sbjct: 448 AIHTKHVQTRVEVEDGGTVAIGGIYEQLRRDDVTHVPLLGRIPVLGALFRHRARSDQRNE 507 Query: 410 IFIAATPFLV 419 + + TP +V Sbjct: 508 LVVFITPTVV 517 >gi|121586611|ref|ZP_01676396.1| general secretion pathway protein D [Vibrio cholerae 2740-80] gi|121726696|ref|ZP_01679921.1| general secretion pathway protein D [Vibrio cholerae V52] gi|147674158|ref|YP_001218221.1| general secretion pathway protein D [Vibrio cholerae O395] gi|153212585|ref|ZP_01948332.1| general secretion pathway protein D [Vibrio cholerae 1587] gi|153802934|ref|ZP_01957520.1| general secretion pathway protein D [Vibrio cholerae MZO-3] gi|153817437|ref|ZP_01970104.1| general secretion pathway protein D [Vibrio cholerae NCTC 8457] gi|153821293|ref|ZP_01973960.1| general secretion pathway protein D [Vibrio cholerae B33] gi|153825504|ref|ZP_01978171.1| general secretion pathway protein D [Vibrio cholerae MZO-2] gi|153828338|ref|ZP_01981005.1| general secretion pathway protein D [Vibrio cholerae 623-39] gi|227082847|ref|YP_002811398.1| general secretion pathway protein D [Vibrio cholerae M66-2] gi|229507219|ref|ZP_04396724.1| general secretion pathway protein D [Vibrio cholerae BX 330286] gi|229509860|ref|ZP_04399341.1| general secretion pathway protein D [Vibrio cholerae B33] gi|229513661|ref|ZP_04403125.1| general secretion pathway protein D [Vibrio cholerae TMA 21] gi|229516981|ref|ZP_04406427.1| general secretion pathway protein D [Vibrio cholerae RC9] gi|229524711|ref|ZP_04414116.1| general secretion pathway protein D [Vibrio cholerae bv. albensis VL426] gi|229527341|ref|ZP_04416733.1| general secretion pathway protein D [Vibrio cholerae 12129(1)] gi|229606725|ref|YP_002877373.1| general secretion pathway protein D [Vibrio cholerae MJ-1236] gi|254285928|ref|ZP_04960890.1| general secretion pathway protein D [Vibrio cholerae AM-19226] gi|254851270|ref|ZP_05240620.1| general secretion pathway protein D [Vibrio cholerae MO10] gi|255744309|ref|ZP_05418261.1| general secretion pathway protein D [Vibrio cholera CIRS 101] gi|262158581|ref|ZP_06029696.1| general secretion pathway protein D [Vibrio cholerae INDRE 91/1] gi|262170026|ref|ZP_06037715.1| general secretion pathway protein D [Vibrio cholerae RC27] gi|298500452|ref|ZP_07010256.1| general secretion pathway protein D [Vibrio cholerae MAK 757] gi|11182423|sp|P45779|GSPD_VIBCH RecName: Full=General secretion pathway protein D; AltName: Full=Cholera toxin secretion protein epsD; Flags: Precursor gi|121549170|gb|EAX59203.1| general secretion pathway protein D [Vibrio cholerae 2740-80] gi|121630857|gb|EAX63239.1| general secretion pathway protein D [Vibrio cholerae V52] gi|124116456|gb|EAY35276.1| general secretion pathway protein D [Vibrio cholerae 1587] gi|124121547|gb|EAY40290.1| general secretion pathway protein D [Vibrio cholerae MZO-3] gi|126512023|gb|EAZ74617.1| general secretion pathway protein D [Vibrio cholerae NCTC 8457] gi|126521225|gb|EAZ78448.1| general secretion pathway protein D [Vibrio cholerae B33] gi|146316041|gb|ABQ20580.1| general secretion pathway protein D [Vibrio cholerae O395] gi|148876168|gb|EDL74303.1| general secretion pathway protein D [Vibrio cholerae 623-39] gi|149740789|gb|EDM54880.1| general secretion pathway protein D [Vibrio cholerae MZO-2] gi|150424110|gb|EDN16049.1| general secretion pathway protein D [Vibrio cholerae AM-19226] gi|227010735|gb|ACP06947.1| general secretion pathway protein D [Vibrio cholerae M66-2] gi|227014619|gb|ACP10829.1| general secretion pathway protein D [Vibrio cholerae O395] gi|229334973|gb|EEO00458.1| general secretion pathway protein D [Vibrio cholerae 12129(1)] gi|229338292|gb|EEO03309.1| general secretion pathway protein D [Vibrio cholerae bv. albensis VL426] gi|229346044|gb|EEO11016.1| general secretion pathway protein D [Vibrio cholerae RC9] gi|229349538|gb|EEO14494.1| general secretion pathway protein D [Vibrio cholerae TMA 21] gi|229353334|gb|EEO18273.1| general secretion pathway protein D [Vibrio cholerae B33] gi|229354724|gb|EEO19645.1| general secretion pathway protein D [Vibrio cholerae BX 330286] gi|229369380|gb|ACQ59803.1| general secretion pathway protein D [Vibrio cholerae MJ-1236] gi|254846975|gb|EET25389.1| general secretion pathway protein D [Vibrio cholerae MO10] gi|255737834|gb|EET93227.1| general secretion pathway protein D [Vibrio cholera CIRS 101] gi|262021434|gb|EEY40146.1| general secretion pathway protein D [Vibrio cholerae RC27] gi|262029742|gb|EEY48391.1| general secretion pathway protein D [Vibrio cholerae INDRE 91/1] gi|297540621|gb|EFH76678.1| general secretion pathway protein D [Vibrio cholerae MAK 757] gi|327485201|gb|AEA79608.1| General secretion pathway protein D [Vibrio cholerae LMA3894-4] Length = 674 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 68/374 (18%), Positives = 135/374 (36%), Gaps = 71/374 (18%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE-LSETFLSQSGRNQYANSSS 181 + L+R I ++ + + V++ +D ++ +SE ++ G Q S Sbjct: 245 VRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKR 304 Query: 182 KKVM-------NLLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQ 216 +VM N L + QV ++ I E+ +G Q Sbjct: 305 NEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQ 364 Query: 217 HSI-----------TGSSSGP----------------------------SKSFAADFGGK 237 TG+S G + + D+ Sbjct: 365 WGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKL 424 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + + +++A+ ++ L+ P++T + ASF G + T Sbjct: 425 ASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVIT 484 Query: 298 VSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 S++ +V + G+ L P + + L I+ EVS V+G N + Sbjct: 485 GSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLGANGAVDVRFA 543 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR++ E+ + + Sbjct: 544 KRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV 603 Query: 413 AATPFLVKPVAMRD 426 P +++ D Sbjct: 604 FIKPTIIRDGVTAD 617 >gi|237814100|ref|YP_002898551.1| type IV pilus secretin PilQ [Burkholderia pseudomallei MSHR346] gi|237503013|gb|ACQ95331.1| type IV pilus secretin PilQ [Burkholderia pseudomallei MSHR346] Length = 552 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G AA F Sbjct: 312 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 371 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 372 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 430 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 431 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 488 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 489 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 548 Query: 419 V 419 V Sbjct: 549 V 549 >gi|114568932|ref|YP_755612.1| general secretion pathway protein D [Maricaulis maris MCS10] gi|114339394|gb|ABI64674.1| general secretion pathway protein D [Maricaulis maris MCS10] Length = 650 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 72/320 (22%), Positives = 120/320 (37%), Gaps = 55/320 (17%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------------- 224 V+ L+I QV ++ I E+ +++G Q + G Sbjct: 322 VIRQLDIRRP-QVLVEGIIVEMSDSTARELGVQMLLAGGEGDTPLAMTRFSSNNPDLLAL 380 Query: 225 -GPSKSFAAD------------FGGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIR 270 G + S D + GG G + F VL+A+E Sbjct: 381 TGAATSPGDDDSDLNVSLRDAAINSLLGASGGTLGFGGQNGSGNLFGLVLNAVESDVNSN 440 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSP 325 LA P++ A+ + A F SG + T +++ +V + GV L P + Sbjct: 441 VLATPSIMALDNEEAYFLSGQEIPVTTGEALGSNNTNPFRTVDREEVGVKLTVLPQITEG 500 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + L I EVS VNAG R+ TTV +G IVL GL++ + + ++G Sbjct: 501 NTVRLHIVQEVSSVAGAVNAGSSDLITNKREISTTVLADNGEIIVLGGLIQQEDEISEDG 560 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 +P L ++P +G LFR+ T + + P +++ E D +A Sbjct: 561 VPGLRRLPGVGRLFRSEGSTTRRTNLMVFIRPTIIR---------------SEADMQALT 605 Query: 445 FNRVNKIYGPKEASEVEGQN 464 NR + I + A G + Sbjct: 606 DNRYDFIRNEQIAGSPNGTS 625 >gi|153834019|ref|ZP_01986686.1| msha biogenesis protein mshl [Vibrio harveyi HY01] gi|148869663|gb|EDL68649.1| msha biogenesis protein mshl [Vibrio harveyi HY01] Length = 544 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 62/278 (22%), Positives = 109/278 (39%), Gaps = 27/278 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + + + QV L+ I EV Q G S +S G S S D + Sbjct: 257 REFLGVSQERMQRQVILEAKILEVTLSDGYQQGINWSNMSASIGNSGSIVVDRNPAKLPL 316 Query: 242 GGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 ++ G +F+ V++ + + L+ P +TA + Q + G + Sbjct: 317 DAIGTLLGGQTNVTFSDGNFKAVMNFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFV 376 Query: 297 TVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGV 343 T SS +T G+ L TP + + G + L + EV E + + Sbjct: 377 TELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQL 436 Query: 344 NAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 N G + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 437 NLGGDFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALG 496 Query: 396 ALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 LFRN ++TE+ I P +V ++L R D Sbjct: 497 NLFRNINNVTQKTELVILLKPTVVGVNTWQKELERSRD 534 >gi|254300620|ref|ZP_04968065.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 406e] gi|157810585|gb|EDO87755.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 406e] Length = 455 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 67/336 (19%), Positives = 123/336 (36%), Gaps = 36/336 (10%) Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 I + +A L R+ D++ RV + + + G V + L Q Sbjct: 123 IWVAP-VAELAERERQRF-DAHARVAQL-EPLASRGFVLRYARAADVQRLLAGSAGQRIL 179 Query: 174 NQYANSSSKKVMNLLNIAG------------------EDQVTLKVTIAEVRRDILKQIGF 215 ++ + + NLL + QV ++ I E R + +G Sbjct: 180 SKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGA 239 Query: 216 QH------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + I +G AA F + ++ + L AL Sbjct: 240 RLALRAPDAGERATGIVAGRNGTLAELAARPISGFDAATAGLTLFAARASRLLDVELSAL 299 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E + ++ P + A G + Y+ G + V + L P + Sbjct: 300 EAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQIT 358 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 GR+ L + +V++ +G P+ + T VE+ +GGT+ + G+ + D + Sbjct: 359 PDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVT 416 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 417 RVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 452 >gi|289549028|ref|YP_003474016.1| general secretion pathway protein D [Thermocrinis albus DSM 14484] gi|289182645|gb|ADC89889.1| general secretion pathway protein D [Thermocrinis albus DSM 14484] Length = 637 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 26/289 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------PSKSF 230 +K++ L++ QV + ++ E+ +G + I G+ G S Sbjct: 352 QKLIKKLDVR-RKQVLIAASVVEMSTTKALDLGVRWQILGTQGGGAFGGSTLQDLSSALL 410 Query: 231 AADFGGKFVSEGGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + +F +S G G + F + LE+ T L+ P L + Q A Sbjct: 411 SGNFVLGLLSSSGRSITVGGTNLFFPDLVLLFSLLEKGTGFNLLSNPKLLTLDNQPAEIK 470 Query: 289 SGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVS--EP 339 G + + + + + G+ L TP+V I L++Q + P Sbjct: 471 VGQVVPFASGVKFDINGQPVITYDYKEVGLDLRITPSVSEKNLRLSISLQVQEIIDFLRP 530 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 IG + +P R+ ++ V + +G TI++ GL+ + EG+P L +P+LG LF+ Sbjct: 531 QIGTLSYAVPVTSNRQVNSEVVVENGQTIIIGGLINTRALRSTEGVPGLQDVPVLGWLFK 590 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPD-DHYSVEDDAKAFFFNR 447 ++ +FI TP++++ + +LSR +H + D+ + R Sbjct: 591 RKTTQEDKVSLFIFITPYVIE--SPEELSRITQEHQKLADELRKAMEKR 637 >gi|190575670|ref|YP_001973515.1| putative type II/III pilus secretin [Stenotrophomonas maltophilia K279a] gi|190013592|emb|CAQ47227.1| putative type II/III pilus secretin [Stenotrophomonas maltophilia K279a] Length = 655 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 115/286 (40%), Gaps = 11/286 (3%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-----QVTLKV 200 V+ V + R V ++TF + G + S N+ + QV Sbjct: 365 VIDRPVDQVLIESRIVIATDTFARELGARFGISGSRDNAYFSGNLEANEATRKSQVEANA 424 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 T A+ RD L + S ++ + G ++ + + + L Sbjct: 425 TNAKAYRDWLAGGSTGPAPVPVGSAITRGLNWAMPAASTNPAGSLALSILNAGYLLDVEL 484 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLH 317 A++ + ++ P + + + A G + Y T+S+ G +V + + L Sbjct: 485 SAMQEESRGEVISNPRVVTTNQREALIKQGKEIGYVTISAGAGGVATPNVQFKEVVLELK 544 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPT+ + R+ L +Q + E + G +PS R+ +T V + G T+V+ G+ Sbjct: 545 VTPTITNDNRVFLNMQVKKDEVDRLIQLEGYGTVPSINRREVNTAVLVEDGQTVVIGGVY 604 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P L +P LG LF+ ++++ E+ + TP +++ Sbjct: 605 EFTDRNSISKVPFLGDVPFLGNLFKKRGRSKDKAELLVFVTPKVLR 650 >gi|459551|gb|AAA16704.1| fimbrial assembly protein [Pseudomonas aeruginosa PAO1] Length = 727 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 104/285 (36%), Gaps = 35/285 (12%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---- 228 + Q +++++ L+I QV ++ I E K +G + S Sbjct: 441 QPQERLDELRRIVSQLDIP-VRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKD 499 Query: 229 ------------------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 + + FV G + G+ F + ++ L+ Sbjct: 500 GNIGIKDEDGMNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSGIGIGFITDNIILDLQ 559 Query: 265 RATAI-----RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 R +++P + ++A G + Y+ SSS ++ + + + L T Sbjct: 560 PVGDGKDRQRRVVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVT 618 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P + RI + ++ P +P + + + + G TIV+ G+ ++ Sbjct: 619 PQITPDNRIIVEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQS 678 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + E +P L ++P LG LFR + E+ + TP ++ A+ Sbjct: 679 KSVEKVPFLGELPYLGRLFRRDTVTDRKNELLVFLTPRIMNNQAI 723 >gi|107024260|ref|YP_622587.1| Type IV pilus secretin PilQ [Burkholderia cenocepacia AU 1054] gi|105894449|gb|ABF77614.1| Type IV pilus secretin PilQ [Burkholderia cenocepacia AU 1054] Length = 371 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 101/251 (40%), Gaps = 17/251 (6%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---SKSFAADF----- 234 +++ ++ QV ++ I E + + +G + ++ P SF A+ Sbjct: 93 GLIDAIDRP-SRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPAAEGASFTANARNALD 151 Query: 235 -----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G F + F++ + L ALE + ++ P + A Sbjct: 152 LAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQ 211 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 G + Y+ G + V + L P + GR+ L + +V++ +G P Sbjct: 212 GSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGP 268 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + T VE+ +GGT+ + G+ + + +PLL KIP LGALFR+ + E Sbjct: 269 AIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQRNE 328 Query: 410 IFIAATPFLVK 420 + + TP +V Sbjct: 329 LVVFITPTVVD 339 >gi|154174515|ref|YP_001408333.1| type II and III secretion system protein [Campylobacter curvus 525.92] gi|153793105|gb|EAU00522.2| type II and III secretion system protein [Campylobacter curvus 525.92] Length = 506 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 60/305 (19%), Positives = 120/305 (39%), Gaps = 29/305 (9%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 +L+ + + + ++ +G + +N + + QV + V+I Sbjct: 181 KAILNNTSEHVSAPDPIINSNAGLITVTGTPSQLRRV-ESYINEVQRRLKKQVIIDVSII 239 Query: 204 EVRRDILKQIGFQHS---------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 V + + G S + G + PS + + G + G F Sbjct: 240 AVDLNNEYKQGVDWSKFELGFNSYLGGDPTKPSNAGWNNRGNGLSAGFGQTLNIAANLNF 299 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VT 308 S + +++ LE + ++ P +T ++ Q A + G Y+ + + A + T Sbjct: 300 SLDGMMNFLETNGKAKVISSPKVTTLNNQQALISVGDNINYRVMEQTDSANALNDRVKTT 359 Query: 309 THDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA-------- 356 Y G++L+ P V +I LRI +S + + +R+ Sbjct: 360 YKQYSVFIGILLNLLPEVSDNNKIMLRINPSLSSFKYQEDDVRAQNTNIREIAPDTIQKK 419 Query: 357 -DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V++ SG TIVL GL+ + +P+L+ IP+LG F++++ + TE+ T Sbjct: 420 LSTVVQVNSGDTIVLGGLIGQTKNKQNTAVPILADIPLLGNAFKSTKDAVKTTELIFVIT 479 Query: 416 PFLVK 420 P +V Sbjct: 480 PRVVD 484 >gi|146328722|ref|YP_001209267.1| type IV fimbrial pore PilQ [Dichelobacter nodosus VCS1703A] gi|146232192|gb|ABQ13170.1| type IV fimbrial pore PilQ [Dichelobacter nodosus VCS1703A] Length = 734 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 92/255 (36%), Gaps = 29/255 (11%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--AADFGGKFVSEG--------- 242 QV + + + + + +G + ++ + S + + G G Sbjct: 466 RQVLVDARLVITKDNFARDLGARFGLSFKGTAGSNPIVGSGNLTGTTFYAGMLEEKTIPI 525 Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + + + + L AL+ ++ P + G A Sbjct: 526 DNRLGVNLGIASPNVRAPSYGISILGSDVLVDLELQALQNEGRSEVISSPRVVTQDGNQA 585 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 SG + Y T+ G+ + + L TP V R+ + I+ + Sbjct: 586 KVMSGQEIPYSTL-DDKGSVQTDYKEALLSLEVTPRVTPNDRVNMEIEIKKDRVNWSEQV 644 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P+ +T VE+ +G TIVL G+ + + + +PLL IP++G +F+N+ Sbjct: 645 LGQPAIDKNLLNTKVEVANGETIVLGGIYEQEQSLSENKVPLLGDIPVVGNVFKNTNKKF 704 Query: 406 EETEIFIAATPFLVK 420 + E+ I TP ++ Sbjct: 705 TKNELLIFITPRVID 719 >gi|269104067|ref|ZP_06156764.1| MSHA biogenesis protein MshL [Photobacterium damselae subsp. damselae CIP 102761] gi|268163965|gb|EEZ42461.1| MSHA biogenesis protein MshL [Photobacterium damselae subsp. damselae CIP 102761] Length = 565 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 63/273 (23%), Positives = 103/273 (37%), Gaps = 35/273 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------- 234 KK + + + QV L+ I EV + Q G S G Sbjct: 269 KKFLGMSEQRLKRQVILEAKILEVTLNDSYQQGINWGNITRSIGSGGVTIGQPSVVNPVT 328 Query: 235 -------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 GG +SE + +F V+ L + L+ P +TA + Q A Sbjct: 329 GLINTLPGGNDISELLGGQTNITITDGNFSAVMRFLSTQGDLNVLSSPRVTAANNQKAVI 388 Query: 288 TSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 GG + T SS+ + ++T G+ L TP + G + L + V Sbjct: 389 KVGGDEYFVTNVSSSNVSGDNSTAAPDINLTPFFSGISLDVTPQIDDQGGVLLHVHPAVV 448 Query: 338 EPVIGVNAGDM-----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + V + ++ +R++D+ + SG +V+ GL+K +P Sbjct: 449 DVTDEVKSIELGDKFGTYQLPLAKSSIRESDSIIHAHSGDVVVIGGLMKTSTHDQVSKVP 508 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 LL IP LG LFRN +++TE+ I P +V Sbjct: 509 LLGDIPGLGNLFRNINKVQQKTELVILLKPTVV 541 >gi|253996449|ref|YP_003048513.1| type II and III secretion system protein [Methylotenera mobilis JLW8] gi|253983128|gb|ACT47986.1| type II and III secretion system protein [Methylotenera mobilis JLW8] Length = 659 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 78/380 (20%), Positives = 157/380 (41%), Gaps = 48/380 (12%) Query: 67 QDVLVSDPTKADV--VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI------ER 118 + V D D V+ + + K V N +LI + ++ + Sbjct: 230 TSIFVRDTPIEDAIQVILTTNQL---AKKVLNDNTLLIYPVSRSQEYQELYVRSFYLNSI 286 Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D ++ + ++ ++ +T+V+ +I+ +++ + + Sbjct: 287 DAKRAMNLIKTVLKSKDVYIDEKLNTLVMRDTAESIEIAEKLIASQDLI----------- 335 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADF 234 E +V L+V + E+ R L+ IG ++ S+ S + + Sbjct: 336 --------------EPEVMLEVEVMEINRRSLENIGVRYPSQVSVGVQGKTSSNGVSTNT 381 Query: 235 GGKF-VSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G+ ++E +F+ GV L+ L + T LA P + + + A G + Sbjct: 382 PGRLSLAELKNFNSGLGVFTISDPVLALNLLHQDTDTNLLANPQIRVKNREKAKIHVGDK 441 Query: 293 HLYKT-VSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 T V++STG + +V + G+ L PT+L ++ +++ EVS V Sbjct: 442 IPVFTSVANSTGFVSQTVNYLEVGIKLDVEPTILLQDQVNIKVGLEVSNITDQVKTDTGV 501 Query: 350 ---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + R A+TT++L +G T +LAGL +DD Q + +P LS +P +G LF + ++ Sbjct: 502 LAYTIGSRNANTTLQLKNGETQILAGLFRDDGQNISNKVPGLSSLPFIGRLFTDKNNDKR 561 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + EI + TP ++ +A + Sbjct: 562 KNEIVLLITPRILHNIAPAN 581 >gi|302326451|gb|ADL25652.1| putative bacterial type II/III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 585 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 79/333 (23%), Positives = 136/333 (40%), Gaps = 38/333 (11%) Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMT--LRRFIADSNIRVEMVSDT--VVLHGMV 151 +++ + K + ++ + + ++ + L +F+ S + V + +VL G Sbjct: 260 SSSLWVSEEGAKALADVRVFSLKHVSPEKAMAQLSKFMKGSELNVSEYREQNALVLGGSP 319 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 R I ++ +++ + + QVTL I E R+ Sbjct: 320 RAIARAEELLKMVD-------------------------VPQMQVTLACVIVEFRKGRSF 354 Query: 212 QIGFQHSITGSSSGPSKSFAA--DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 IG + T + DF GK +S+ G F G+L FE L ++E Sbjct: 355 AIGVRSGATRNVGERDIQARGFFDFLGKDISKSGAFGKIGILPD-RFELELSSMEENNEA 413 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPG 326 + LA P +T ++G A Y S +T + + G+ L TPT+ G Sbjct: 414 KVLARPRVTTLNGNKAELNVTNTVYYLVSQVSADGYPITDYRSFNDGISLELTPTMTQDG 473 Query: 327 RIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E+ G + GD P R TTV L G T+ L GL++ + +++ + Sbjct: 474 LITLSVSPEI--KTAGRSTGDGPRDISSRNMKTTVVLRDGETLCLGGLIRKNKTEVRSAV 531 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 P L IPILG LF + +E+E+ I TP + Sbjct: 532 PFLGSIPILGRLFSYTSEEEDESELAIFITPSV 564 >gi|269961295|ref|ZP_06175661.1| MSHA biogenesis protein MshL [Vibrio harveyi 1DA3] gi|269833961|gb|EEZ88054.1| MSHA biogenesis protein MshL [Vibrio harveyi 1DA3] Length = 544 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 64/278 (23%), Positives = 108/278 (38%), Gaps = 27/278 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + + + QV L+ I EV Q G S +S G S S D + Sbjct: 257 REFLGVSQERMQRQVILEAKILEVTLSDGYQQGINWSNMSASIGNSGSVVVDRNPVSLPL 316 Query: 242 GGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 S+ G +FE V+ + + L+ P +TA + Q + G + Sbjct: 317 DAIGSLLGGQTNVTFSDGNFEAVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFV 376 Query: 297 TVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGV 343 T SS +T G+ L TP + + G + L + EV E + + Sbjct: 377 TELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKKL 436 Query: 344 NAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 N G + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 437 NLGGDFQDIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALG 496 Query: 396 ALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 LFRN ++TE+ I P +V ++L R D Sbjct: 497 NLFRNINNVTQKTELVILLKPTVVGVNTWQKELERSRD 534 >gi|167582578|ref|ZP_02375452.1| type II/III secretion system protein [Burkholderia thailandensis TXDOH] Length = 580 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + + +G A F Sbjct: 340 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGF 399 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 400 DAATAGLTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 458 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 459 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 516 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 517 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 576 Query: 419 V 419 V Sbjct: 577 V 577 >gi|15606504|ref|NP_213884.1| general secretion pathway protein D [Aquifex aeolicus VF5] gi|2983708|gb|AAC07271.1| general secretion pathway protein D [Aquifex aeolicus VF5] Length = 625 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 25/269 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------FGGKFVS 240 Q+ L TI E + + G + I G+ G + ++ G F Sbjct: 333 RKQLLLTATIIEASAKSILEAGIRWQILGTHGGAAFKGSSLQDVYNAIKSGNFVIGGFSK 392 Query: 241 EGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298 G S+ G+ F + LE+ T ++ P + + Q A G + T Sbjct: 393 SGTTVSIGGIDFFFPDLVFLFSLLEQGTGFNVVSNPKILTLDNQEALIKVGQVVPFPTGI 452 Query: 299 ---SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMP 349 + + D G+ L TP + + L I+ ++ E + +P Sbjct: 453 KYDVNGNPIITYDYKDVGLELKITPRIT-GETVRLVIELKLQEITGYLTNEVSGVNYTVP 511 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R+ ++ V + +G T+V+ GL+ + E IP L IP++G LFR R +++T Sbjct: 512 ITSNRELNSDVVVENGRTVVIGGLISRKSLKSTEKIPGLGDIPVMGRLFRYDRDEKDKTS 571 Query: 410 IFIAATPFLV-KPVAMRDLSRPDDHYSVE 437 +FI TP+++ P + L++ + + E Sbjct: 572 LFIFLTPYVITSPQELAKLTQEHEKLARE 600 >gi|294791632|ref|ZP_06756780.1| putative type II and III secretion system protein [Veillonella sp. 6_1_27] gi|294456862|gb|EFG25224.1| putative type II and III secretion system protein [Veillonella sp. 6_1_27] Length = 432 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 76/312 (24%), Positives = 136/312 (43%), Gaps = 21/312 (6%) Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 +LI+ D LE I+ ++ E L +V T+ + + LSE Sbjct: 137 TLLIDSDDETLEKRELYVISPEHLPAES------LKNVVGTVVKNDKMAVLSEQNEVIMH 190 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKS 229 + ++ ++ QV L+ TI + + K+ GF+ S TG + S Sbjct: 191 LTSGEKRRVETLVRAID-KEPKQVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHS 249 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + A GK + G +F + L +E + +A+P++ A++G++A Sbjct: 250 YGAVTFGKTPT--------GEAYKFFVKPELSLMESSGKAVLIAKPSIMALNGETAHILI 301 Query: 290 GGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + S G S + G+ L++TP + + G + +I EVS P++ V+ Sbjct: 302 GERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITADGGVDAKIHAEVSTPIM-VSEMK 360 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 R+A T V L G +V+ GL+ + Q + IP+L IP+LG LFR+SR ++ Sbjct: 361 AYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDS 420 Query: 408 TEIFIAATPFLV 419 E+ + +V Sbjct: 421 IEMLMLVRATVV 432 >gi|167847616|ref|ZP_02473124.1| type IV pilus secretin PilQ [Burkholderia pseudomallei B7210] Length = 460 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G AA F Sbjct: 220 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 279 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 280 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 338 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 339 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 396 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 397 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 456 Query: 419 V 419 V Sbjct: 457 V 457 >gi|197335785|ref|YP_002155116.1| general secretion pathway protein D [Vibrio fischeri MJ11] gi|197317275|gb|ACH66722.1| general secretion pathway protein D [Vibrio fischeri MJ11] Length = 548 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 104/271 (38%), Gaps = 31/271 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL- 251 + QV L+ + EV Q G S +S G + G G L Sbjct: 269 QRQVILEAKLLEVTLSDGYQQGINWSNLTASLGGTDVVFGQTPGLVQGALPGMDTIGTLL 328 Query: 252 --------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSST 302 +F+ VL ++ + L+ P +TA + Q A G Y T VSS T Sbjct: 329 GGQTNITVSDGNFQAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGRDEYYVTEVSSVT 388 Query: 303 GA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIG 342 G+ ++T G+ L TP + G + L + V + V G Sbjct: 389 GSGDNSNASPEVTLTPFFSGISLDVTPQIDDKGNVMLHVHPSVIDVENEVKEIDLGDVGG 448 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 V + +R++D+ + SG +V+ GL+K +PLL +P LG LFRN Sbjct: 449 VLKLPLAKSSIRESDSVIRAKSGDVVVIGGLMKSQTVDQVSKVPLLGDVPALGHLFRNVS 508 Query: 403 FNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 ++TE+ I P +V +L R D Sbjct: 509 QLTQKTELVILLKPTVVGVDTWQEELERSRD 539 >gi|126454219|ref|YP_001067989.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106a] gi|242314362|ref|ZP_04813378.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106b] gi|126227861|gb|ABN91401.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106a] gi|242137601|gb|EES24003.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106b] Length = 465 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G AA F Sbjct: 225 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 284 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 285 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 343 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 344 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 401 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 402 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 461 Query: 419 V 419 V Sbjct: 462 V 462 >gi|85860506|ref|YP_462708.1| type IV secretion [Syntrophus aciditrophicus SB] gi|85723597|gb|ABC78540.1| type IV secretion [Syntrophus aciditrophicus SB] Length = 590 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 61/352 (17%), Positives = 125/352 (35%), Gaps = 47/352 (13%) Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 + + + L + + + + + + V +++ ++ E+ + Sbjct: 238 VNVHMRDVPWDQALETILDIHGLAKKEMGNVI----SVMSLEKKKKDEEVRKAAEKDQIE 293 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 + ++ + L Q++++ I E + +K +G S+ S F A Sbjct: 294 AEANRKKREQDL-LAEKGRLRQISIEAKIVEASEEFIKNLGVTWGGAVSARMGSYPFQAA 352 Query: 234 FGGKFVS-------------EGGDFSVKGVLDRFS------------------------- 255 +G + G ++ G S Sbjct: 353 YGTNTRTTEGQTNPVSYPYPAGIGYTTSGTGAVLSQAAVNMPGSIIGTPTLGVVIGGSKA 412 Query: 256 -FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + + ALE ++ + ++ P +T + G +A G + Y T G V + + Sbjct: 413 VLDVQIAALESTSSGKIISTPKVTTMDGVTAKIKQGEEIPY-TTYDDKGYPRVNFKEAVL 471 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLAG 372 L TP++ GRI ++I GD + D+ V + G TIV+ G Sbjct: 472 KLEVTPSITPDGRISMQINATNDRGDYAKAGILGDNVPIIKNEVDSKVVVEDGTTIVIGG 531 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + K G+P LS+IP+LG LF++ +R ++ I TP ++ V Sbjct: 532 VSKTTDDTSTSGVPWLSRIPVLGWLFKSENTDRTRKQLLIFVTPKIIPDVEP 583 >gi|94496443|ref|ZP_01303020.1| type II and III secretion system protein [Sphingomonas sp. SKA58] gi|94424189|gb|EAT09213.1| type II and III secretion system protein [Sphingomonas sp. SKA58] Length = 726 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 130/329 (39%), Gaps = 16/329 (4%) Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G ++ I ++R + ++ +++ + V++ ++ I D+ Sbjct: 314 NTRGPAIVTRYEGANAIIVAANSDVQRMLGETIRQIDTRREQVLVEAIIVEISDAAAKKL 373 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAG-----EDQVTLKVTIAEVRRDILKQIGFQH 217 + + + A + S NLL +AG + T +A ++ Sbjct: 374 GVQFLIGSTKTGFAATNYSNASPNLLTLAGAYGANQLGTTTTTVVAPDGTRTTTEVRENS 433 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + + + + G GG G+ F +++A++ T L+ P++ Sbjct: 434 DLASTLQQAAINSLQSATGAIAGLGGSIGSNGI-----FGAIINAVKSDTESNLLSTPSV 488 Query: 278 TAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + Q AS G Q T + +V D G+ L P + + G I L + Sbjct: 489 MTLDNQKASILVGQQVPVTTGEALSQNFDNQFRTVQRQDVGIKLEVKPQINTGGAIKLFL 548 Query: 333 QTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + EVS V N R+ +TTV + G + L GLL D+ ++ E IPLLS I Sbjct: 549 RQEVSSVAGPVSNDNSDLIINKREIETTVTVDDGEILALGGLLDDNERKTIERIPLLSDI 608 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P +G LF++ +R +T + + P +++ Sbjct: 609 PGIGELFKSRSRSRTKTNLMVFIRPTILR 637 >gi|170731725|ref|YP_001763672.1| type IV pilus secretin PilQ [Burkholderia cenocepacia MC0-3] gi|169814967|gb|ACA89550.1| type IV pilus secretin PilQ [Burkholderia cenocepacia MC0-3] Length = 543 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 16/243 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADF----------GGK 237 QV ++ I E + + +G + ++ PS SF AD Sbjct: 272 RPSRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPSAEGTSFTADARNALDLAARPLSG 331 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F + F++ + L ALE + ++ P + A G + Y+ Sbjct: 332 FDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ- 390 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G + V + L P + GR+ L + +V++ +G P+ + Sbjct: 391 AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQ 448 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T VE+ +GGT+ + G+ + + +PLL KIP LGALFR+ + E+ + TP Sbjct: 449 TRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQRNELVVFITPT 508 Query: 418 LVK 420 +V Sbjct: 509 VVD 511 >gi|156975932|ref|YP_001446839.1| hypothetical protein VIBHAR_03698 [Vibrio harveyi ATCC BAA-1116] gi|156527526|gb|ABU72612.1| hypothetical protein VIBHAR_03698 [Vibrio harveyi ATCC BAA-1116] Length = 544 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 63/278 (22%), Positives = 108/278 (38%), Gaps = 27/278 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ + + + QV L+ I EV Q G S +S G S S D + Sbjct: 257 REFLGVSQERMQRQVILEAKILEVTLSDGYQQGINWSNMSASIGNSGSILVDRNPAKLPL 316 Query: 242 GGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 ++ G +FE V+ + + L+ P +TA + Q + G + Sbjct: 317 DAIGTLLGGQTNVTFSDGNFEAVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFV 376 Query: 297 TVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGV 343 T SS +T G+ L TP + + G + L + EV E + + Sbjct: 377 TELSSNAGNGENSNAVPEVELTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQL 436 Query: 344 NAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 N G + +R++D+ + G +V+ GL+K + +P L +P LG Sbjct: 437 NLGGDFQNIQLPLAKSSIRESDSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALG 496 Query: 396 ALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 LFRN ++TE+ I P +V ++L R D Sbjct: 497 NLFRNINNVTQKTELVILLKPTVVGVNTWQKELERSRD 534 >gi|254253479|ref|ZP_04946797.1| Type II secretory pathway component HofQ [Burkholderia dolosa AUO158] gi|124896088|gb|EAY69968.1| Type II secretory pathway component HofQ [Burkholderia dolosa AUO158] Length = 549 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 16/240 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-------------SKSFAADFGGKFV 239 QV ++ I E + + +G + ++ P + AA G F Sbjct: 280 SRQVRIEARIVEGEQGFSRNLGARLALHAQGRPPPGDGAAPATDTRNALDLAARPLGGFD 339 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 340 AATAGLTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ-AK 398 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 G + V + L P GR+ L + +V++ +G P+ + T Sbjct: 399 VGNGVSGVQFRRATLKLEVEPQSTPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTR 456 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 VE+ GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + TP +V Sbjct: 457 VEVEDGGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHQARRDQRSELVVFITPTVV 516 >gi|194367008|ref|YP_002029618.1| type IV pilus secretin PilQ [Stenotrophomonas maltophilia R551-3] gi|194349812|gb|ACF52935.1| type IV pilus secretin PilQ [Stenotrophomonas maltophilia R551-3] Length = 657 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 57/287 (19%), Positives = 114/287 (39%), Gaps = 12/287 (4%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI-----AGEDQVTLKV 200 V+ V + R V ++TF + G + S V N+ E QV Sbjct: 366 VIDRPVDQVLIESRIVIATDTFARELGAKFGISGSRDNVYFSGNLEANRLTRESQVKTAQ 425 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 A+ RD + + S ++ S G ++ + + + L Sbjct: 426 DNAKAERDWIAGGRVGPPPVATGSTITRGLNWSLPVATASNPGSLALSILNAGYLLDVEL 485 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVL 316 A++ + ++ P + + + A+ G + Y T+S +V + + L Sbjct: 486 SAMQEESRGEVISNPRVVTTNQREATIKQGKEIGYVTISGGGTGGVATPNVQFKEVVLEL 545 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGL 373 TPT+ + R+ L +Q + E + G +PS R+ +T V + G T+V+ G+ Sbjct: 546 KVTPTITNDNRVFLNMQVKKDEVDQLIQLDGYGTVPSINRREVNTAVLVEDGQTVVIGGV 605 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P L +P LG LF+ N+++ E+ + TP +++ Sbjct: 606 YEFTDRSSISKVPFLGDVPFLGNLFKKRGRNKDKAELLVFVTPKVLR 652 >gi|58580784|ref|YP_199800.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425378|gb|AAW74415.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 673 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 111/286 (38%), Gaps = 48/286 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------------- 222 +++++ ++ DQV ++ I + +G + I G+ Sbjct: 383 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNT 441 Query: 223 ---------SSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261 + G S + A GG + G + + F+ + L Sbjct: 442 SAKRASEIANGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELS 501 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLH 317 A+++ ++ P + + + G + Y T+S S +V + + L Sbjct: 502 AMQQEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELK 561 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPT+ + R+ L + + E ++ G +P R+ +T V + G T+V+ G+ Sbjct: 562 VTPTITNDNRVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVY 621 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 622 EFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 667 >gi|108757430|ref|YP_630733.1| general secretion pathway protein D [Myxococcus xanthus DK 1622] gi|108461310|gb|ABF86495.1| general secretion pathway protein D [Myxococcus xanthus DK 1622] Length = 863 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 118/329 (35%), Gaps = 58/329 (17%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE-----DQVTLKVTIA 203 G T Q ++ + + + +SS N++ + + QV ++ I Sbjct: 382 GGPTTTQAAELFSGEVKISADKGSNSLVIVASSADYKNIVQVIQQLDKPRRQVFVEAVIM 441 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKS-----FAADFGGKFVSEGGDFSVKGVLDRF---- 254 EV D ++G S S + + G+ + + F Sbjct: 442 EVNLDRNARLGMNLHSGFSLSTSNGDQVPGLIGTNTSGQGLPPSLSLTSLASYGGFLAGI 501 Query: 255 --------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 +F VLHA+++++ + L+ P + + A T G +++ + Sbjct: 502 QGPVIPALEKLGIPAFGVVLHAMQQSSDVNVLSTPHILTSDNEEAEITVGQNVPFQSGFN 561 Query: 301 STGA-----------------------------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 T +T + + L P + I L Sbjct: 562 PTSLGSLGAGVGGGAGALGGGLLGGLGGLGSLYAPITRQNVELKLTVKPQINESDYIRLV 621 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 I + +E + + P+ R A TTV T+V+ G+++D + +PLL I Sbjct: 622 INQQ-TEEIASTDPVLGPTTSRRSAKTTVIARDQETLVIGGIMQDRTLESVSKVPLLGDI 680 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420 P+LG LFR++ + +T + + TP++++ Sbjct: 681 PLLGHLFRDTTRRKTKTNLLLFLTPYIIR 709 >gi|91775689|ref|YP_545445.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91709676|gb|ABE49604.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 653 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 156/381 (40%), Gaps = 50/381 (13%) Query: 67 QDVLVSDPTK---ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI------E 117 V + + DV++ S + GK V N +LI + + + Sbjct: 231 TSVFLRNTPIEEAIDVILASNQ----LGKKVLNDNTLLIYPLSRSQEYQETFVRSFYLSN 286 Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 D L ++ + +I ++ +T+V+ D+ A+ +E + Sbjct: 287 TDAKKLMAMIKTVVKTKDIYIDEKLNTLVMR-------DTPEAIRTAEKLI--------- 330 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAA 232 + E +V L+V + E+ R L+ IG ++ S + + Sbjct: 331 ---------MSQDMAEPEVMLEVEVLEINRRSLENIGIRYPTNVSLDVQGRDTVNGTTTL 381 Query: 233 DFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G ++E +F+ GV L+ L++ T LA P + + + A G Sbjct: 382 TPGKLTINELKNFNSNLGVFSISDPVLALNLLQQDTDTNLLANPHIRVKNREKAKIHVGD 441 Query: 292 QHLYKT-VSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNA 345 + T V++STG + +V + GV L PT+L + ++I EVS + Sbjct: 442 RIPVLTSVANSTGFISQTVNYIEVGVKLDVEPTILLRDEVSIKIGLEVSNQTDRMETSSG 501 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + R A T + L G T +LAGL+++D Q++ G+P LSK+P++G LF N+ + Sbjct: 502 TVTYTIGTRNASTILRLKDGETQILAGLMRNDEQKITNGVPGLSKLPLIGKLFNNNNNDL 561 Query: 406 EETEIFIAATPFLVKPVAMRD 426 + EI + TP ++ + + Sbjct: 562 SKKEIALFITPRIISNLTPEN 582 >gi|167740501|ref|ZP_02413275.1| type II/III secretion system protein [Burkholderia pseudomallei 14] gi|167826105|ref|ZP_02457576.1| type II/III secretion system protein [Burkholderia pseudomallei 9] gi|167896189|ref|ZP_02483591.1| type II/III secretion system protein [Burkholderia pseudomallei 7894] gi|167904571|ref|ZP_02491776.1| type II/III secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|167912835|ref|ZP_02499926.1| type II/III secretion system protein [Burkholderia pseudomallei 112] gi|167920795|ref|ZP_02507886.1| type II/III secretion system protein [Burkholderia pseudomallei BCC215] gi|254198490|ref|ZP_04904911.1| type IV pilus secretin PilQ [Burkholderia pseudomallei S13] gi|254201342|ref|ZP_04907706.1| type IV pilus secretin PilQ [Burkholderia mallei FMH] gi|147747236|gb|EDK54312.1| type IV pilus secretin PilQ [Burkholderia mallei FMH] gi|169655230|gb|EDS87923.1| type IV pilus secretin PilQ [Burkholderia pseudomallei S13] Length = 457 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G AA F Sbjct: 217 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 276 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 277 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 335 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 336 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 393 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 394 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 453 Query: 419 V 419 V Sbjct: 454 V 454 >gi|77918000|ref|YP_355815.1| type II and III secretion system protein [Pelobacter carbinolicus DSM 2380] gi|77544083|gb|ABA87645.1| type II and III secretion system protein [Pelobacter carbinolicus DSM 2380] Length = 537 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 73/333 (21%), Positives = 130/333 (39%), Gaps = 41/333 (12%) Query: 128 RRFIADSNIRVEMVSD-----TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 ++ S I E +D +V L MV +D +R V + + + + Sbjct: 170 NAMVSGSRIDTESSADFWTELSVALRTMVG-QEDGRRVVIQPQAGVVVVRALPEELRTIE 228 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----FAADFGGKF 238 + + + + QV L+ I EV Q G S +++ FA + Sbjct: 229 QYLGTIQGNLQRQVILEAKILEVELGDGYQAGINWSAVNGDVSMAQTRGDIFADNGLADI 288 Query: 239 VSEGGDFSVKGV------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 V G G+ L+ +F+ + LE ++ L+ P + ++ Q A Sbjct: 289 VGSDGAAVTSGLASGAFGGVFSAALNFKNFQAFIELLETQGDVQVLSSPRIATVNNQKAV 348 Query: 287 FTSGGQHLYKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 G + T SS ++T G+ L TP + G++ L I V Sbjct: 349 IKVGSDEFFVTDVSSDTVTGTTTTTSPDITLTPFFSGIALDVTPQIDPKGKVTLHIHPTV 408 Query: 337 SEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 SE + VR++D+ V SG +V+ GL+KD +Q +PL Sbjct: 409 SEVSDQTKDITVAGETQTLPLAFSTVRESDSIVAAESGQVVVIGGLMKDQLQNRDASVPL 468 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L ++P +GALFR+++ ++E+ I P +V+ Sbjct: 469 LGRLPGVGALFRHTQSVSRKSELVILLRPMVVE 501 >gi|254180385|ref|ZP_04886983.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1655] gi|254190347|ref|ZP_04896855.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pasteur 52237] gi|254261204|ref|ZP_04952258.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1710a] gi|157938023|gb|EDO93693.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pasteur 52237] gi|184210924|gb|EDU07967.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1655] gi|254219893|gb|EET09277.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1710a] Length = 445 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G AA F Sbjct: 205 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 264 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 265 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 323 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 324 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 381 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 382 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 441 Query: 419 V 419 V Sbjct: 442 V 442 >gi|42522439|ref|NP_967819.1| fimbrial assembly protein [Bdellovibrio bacteriovorus HD100] gi|39574971|emb|CAE78812.1| fimbrial assembly protein [Bdellovibrio bacteriovorus HD100] Length = 726 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 101/245 (41%), Gaps = 16/245 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKF 238 QV+++ I E + + IG S TG+ + PS + G Sbjct: 467 TQPAQVSIEGKIVEAKESFTRNIGVNWSATGAPIKLGSTARGPVNMNPSFNVNQSAAGSS 526 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + +V + + L E ++ ++ P + +S + A + + V Sbjct: 527 GALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQTTEVPVRQV 586 Query: 299 SSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--RVR 354 + + AT + + L TP V + G + +++ V++ ++ R Sbjct: 587 TQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVLVNRQFRGADVSSAGQGAFAVNSR 646 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +A+T V + +G T V+ G+ + D + G+P ++P + LF+ ++E++E+ I Sbjct: 647 EANTRVLVKNGQTAVIGGIYQSDATDGEVGVPWFRELPFVSYLFKTKNISKEKSELLIFL 706 Query: 415 TPFLV 419 TP ++ Sbjct: 707 TPRIM 711 >gi|67641888|ref|ZP_00440653.1| type IV pilus secretin PilQ [Burkholderia mallei GB8 horse 4] gi|121600460|ref|YP_994488.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|126439652|ref|YP_001060705.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 668] gi|126450056|ref|YP_001082319.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|226198301|ref|ZP_03793872.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pakistan 9] gi|251767786|ref|ZP_02268424.2| type IV pilus secretin PilQ [Burkholderia mallei PRL-20] gi|254174977|ref|ZP_04881638.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|254206684|ref|ZP_04913035.1| type IV pilus secretin PilQ [Burkholderia mallei JHU] gi|121229270|gb|ABM51788.1| type II/III secretion system protein [Burkholderia mallei SAVP1] gi|126219145|gb|ABN82651.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 668] gi|126242926|gb|ABO06019.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|147752226|gb|EDK59292.1| type IV pilus secretin PilQ [Burkholderia mallei JHU] gi|160696022|gb|EDP85992.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|225929821|gb|EEH25837.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pakistan 9] gi|238522900|gb|EEP86342.1| type IV pilus secretin PilQ [Burkholderia mallei GB8 horse 4] gi|243061735|gb|EES43921.1| type IV pilus secretin PilQ [Burkholderia mallei PRL-20] Length = 462 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G AA F Sbjct: 222 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 281 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 282 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 340 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 341 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 398 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 399 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 458 Query: 419 V 419 V Sbjct: 459 V 459 >gi|269797724|ref|YP_003311624.1| type II and III secretion system protein [Veillonella parvula DSM 2008] gi|269094353|gb|ACZ24344.1| type II and III secretion system protein [Veillonella parvula DSM 2008] Length = 432 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 76/312 (24%), Positives = 136/312 (43%), Gaps = 21/312 (6%) Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 +LI+ D LE I+ ++ E L +V T+ + + LSE Sbjct: 137 TLLIDSDDETLEKRELYVISPEHLPAES------LKNVVGTVVKNDKMAVLSEQNEVIMH 190 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKS 229 + ++ ++ QV L+ TI + + K+ GF+ S TG + S Sbjct: 191 LTSGEKRRVETLVCAID-KEPKQVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHS 249 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + A GK + G +F + L +E + +A+P++ A++G++A Sbjct: 250 YGAVTFGKTPT--------GEAYKFFVKPELSLMESSGKAVLIAKPSIMALNGETAHILI 301 Query: 290 GGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + S G S + G+ L++TP + + G + +I EVS P++ V+ Sbjct: 302 GERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITADGGVDAKIHAEVSTPIM-VSEMK 360 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 R+A T V L G +V+ GL+ + Q + IP+L IP+LG LFR+SR ++ Sbjct: 361 AYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDS 420 Query: 408 TEIFIAATPFLV 419 E+ + +V Sbjct: 421 IEMLMLVRATVV 432 >gi|261414950|ref|YP_003248633.1| type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371406|gb|ACX74151.1| type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 603 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 79/333 (23%), Positives = 136/333 (40%), Gaps = 38/333 (11%) Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMT--LRRFIADSNIRVEMVSDT--VVLHGMV 151 +++ + K + ++ + + ++ + L +F+ S + V + +VL G Sbjct: 278 SSSLWVSEEGAKALADVRVFSLKHVSPEKAMAQLSKFMKGSELNVSEYREQNALVLGGSP 337 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 R I ++ +++ + + QVTL I E R+ Sbjct: 338 RAIARAEELLKMVD-------------------------VPQMQVTLACVIVEFRKGRSF 372 Query: 212 QIGFQHSITGSSSGPSKSFAA--DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 IG + T + DF GK +S+ G F G+L FE L ++E Sbjct: 373 AIGVRSGATRNVGERDIQARGFFDFLGKDISKSGAFGKIGILPD-RFELELSSMEENNEA 431 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPG 326 + LA P +T ++G A Y S +T + + G+ L TPT+ G Sbjct: 432 KVLARPRVTTLNGNKAELNVTNTVYYLVSQVSADGYPITDYRSFNDGISLELTPTMTQDG 491 Query: 327 RIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E+ G + GD P R TTV L G T+ L GL++ + +++ + Sbjct: 492 LITLSVSPEI--KTAGRSTGDGPRDISSRNMKTTVVLRDGETLCLGGLIRKNKTEVRSAV 549 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 P L IPILG LF + +E+E+ I TP + Sbjct: 550 PFLGSIPILGRLFSYTSEEEDESELAIFITPSV 582 >gi|167721530|ref|ZP_02404766.1| type II/III secretion system protein [Burkholderia pseudomallei DM98] gi|167817709|ref|ZP_02449389.1| type II/III secretion system protein [Burkholderia pseudomallei 91] Length = 454 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G AA F Sbjct: 214 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 273 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 274 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 332 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 333 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 390 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 391 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 450 Query: 419 V 419 V Sbjct: 451 V 451 >gi|291613156|ref|YP_003523313.1| pilus (MSHA type) biogenesis protein MshL [Sideroxydans lithotrophicus ES-1] gi|291583268|gb|ADE10926.1| pilus (MSHA type) biogenesis protein MshL [Sideroxydans lithotrophicus ES-1] Length = 614 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 56/281 (19%), Positives = 114/281 (40%), Gaps = 38/281 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ ++ + A QV ++ TIAEV Q G S G S Sbjct: 308 QEFIDKVMTAARRQVLIEATIAEVTLSRNYQQGINWSALALGGKGFSLTQLATAGLPSSN 367 Query: 242 GGDFSVKGVLDRF----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G + + + L+ ++ L+ P L+ ++ Q+A+ +Y T Sbjct: 368 TGSMVTLAYNNATSKVGNLSGAVQLLDSFGDVKVLSSPKLSVMNNQTATLKVVDNKVYFT 427 Query: 298 VSSSTGAT--SVTTHD----------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344 ++ + G+T ++ T G ++ TP + + + ++ ++ + VN Sbjct: 428 ITVTPGSTNGTIVTPPTFSTTAVPVAVGFTMNVTPEINDSDYVTINVRPTITRIIDYVND 487 Query: 345 ---------------------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +P R R+ ++ + + SG VL GL++D+I + Sbjct: 488 PNPNLANPCGTGVTSCAVAAIVNRVPEIRTREMESIIRVSSGQIAVLGGLMQDEINNQSD 547 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G+PLL +IP +G+LF+N + +TE+ I P ++K ++ Sbjct: 548 GVPLLDEIPGIGSLFKNRNDTKTKTELVIFLRPVIIKDASL 588 >gi|114778365|ref|ZP_01453212.1| probable pilQ; fimbrial type-4 assembly signal peptide protein [Mariprofundus ferrooxydans PV-1] gi|114551328|gb|EAU53885.1| probable pilQ; fimbrial type-4 assembly signal peptide protein [Mariprofundus ferrooxydans PV-1] Length = 793 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 17/248 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------- 245 QV ++ I E + +G + T +S+G + D Sbjct: 548 QQVMVEARIVEATDTFSRDLGVKWGGTLNSNGGGYTHTVTGAASAPQNVVDLGAAVKAGA 607 Query: 246 ------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 ++ + + + L A E I+ ++ P + + Q A Q ++ + Sbjct: 608 GGAIGYTLGTLNNALNLNLELSAAEAEGQIKVVSSPRVFTSNLQEALIEQDQQIPFQVTT 667 Query: 300 SSTG-ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 +ST S + L TP + + RI +++ PV N P+ ++ T Sbjct: 668 ASTPPVVSYQLKSAKLTLKVTPQITADKRIIMQLVVNKDTPV--ANTVGPPTIDKKQIMT 725 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + + +G T+VL G+ G+P L IP +G F+ + R E+ I TP + Sbjct: 726 KLLVKNGETMVLGGIYTQTTSDQVNGVPGLQNIPFIGNFFKRKQKVRNRNELLIFITPTI 785 Query: 419 VKPVAMRD 426 + ++ Sbjct: 786 IADDGPKN 793 >gi|53720777|ref|YP_109763.1| putative secretion system protein [Burkholderia pseudomallei K96243] gi|52211191|emb|CAH37180.1| putative secretion system protein [Burkholderia pseudomallei K96243] Length = 442 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G AA F Sbjct: 202 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 261 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 262 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 320 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 321 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 378 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 379 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 438 Query: 419 V 419 V Sbjct: 439 V 439 >gi|217424883|ref|ZP_03456380.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 576] gi|217392339|gb|EEC32364.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 576] Length = 459 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 15/241 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238 QV ++ I E R + +G + I +G AA F Sbjct: 219 TPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELAARPISGF 278 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ + L ALE + ++ P + A G + Y+ Sbjct: 279 DAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-A 337 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 G + V + L P + GR+ L + +V++ +G P+ + T Sbjct: 338 KVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQT 395 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 VE+ +GGT+ + G+ + D + +PLL KIP+LGALFR+ + +E+ + TP + Sbjct: 396 RVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTV 455 Query: 419 V 419 V Sbjct: 456 V 456 >gi|84622715|ref|YP_450087.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366655|dbj|BAE67813.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 649 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 111/286 (38%), Gaps = 48/286 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------------- 222 +++++ ++ DQV ++ I + +G + I G+ Sbjct: 359 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNT 417 Query: 223 ---------SSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261 + G S + A GG + G + + F+ + L Sbjct: 418 SAKRASEIANGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELS 477 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLH 317 A+++ ++ P + + + G + Y T+S S +V + + L Sbjct: 478 AMQQEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELK 537 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPT+ + R+ L + + E ++ G +P R+ +T V + G T+V+ G+ Sbjct: 538 VTPTITNDNRVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVY 597 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 598 EFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 643 >gi|325925811|ref|ZP_08187183.1| Type II secretory pathway protein D [Xanthomonas perforans 91-118] gi|325543797|gb|EGD15208.1| Type II secretory pathway protein D [Xanthomonas perforans 91-118] Length = 692 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 77/427 (18%), Positives = 152/427 (35%), Gaps = 65/427 (15%) Query: 100 ILIGHDGKQMLNLDILIER----DIAHLEMTLRRFIADSNIRVEMVS--------DTVVL 147 + DG+ D+ + R L L++ + + D Sbjct: 245 TAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQDTRSTAMDVAAA 304 Query: 148 HGMVRTIQDSQRA------VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201 G +T + A V + + + V+ L++ +QV ++ Sbjct: 305 SGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDVH-REQVLVEAI 363 Query: 202 IAEVRRDILKQIGFQHSITGSS----------SGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + E+ K++G Q + G + SG S + G+ VL Sbjct: 364 VVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGTRSGNADDDSVL 423 Query: 252 -------------------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + F ++ A++ T L+ P++ + + A Sbjct: 424 EQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNEQAR 483 Query: 287 FTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 G + T ++ ++ D GV L P + + G I L I+ EVS Sbjct: 484 ILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSAIAG 543 Query: 342 GVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 V+A + R+ +T V + +G + L GLL + +Q E +PLL +P LGALFR+ Sbjct: 544 PVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRH 603 Query: 401 SRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY----SVEDDAKAFFFNRVNKIYGPK 455 NR++T + + P +++ A + ++ P +Y + D + + + Y Sbjct: 604 KSRNRDKTNLMVFIRPTVIRDAADAQRMTAPRYNYLRERQLADGDPEAALDALVRDYLRA 663 Query: 456 EASEVEG 462 + ++ Sbjct: 664 QPPQLPA 670 >gi|300023665|ref|YP_003756276.1| general secretion pathway protein D [Hyphomicrobium denitrificans ATCC 51888] gi|299525486|gb|ADJ23955.1| general secretion pathway protein D [Hyphomicrobium denitrificans ATCC 51888] Length = 773 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 124/291 (42%), Gaps = 20/291 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEV 205 G + S V ++ + + + + KK++ +L+ + QV + T+AEV Sbjct: 440 EGPQSSAATSSDQVRVTPDERNNKLLIKASERNYKKILQILHRVDQPPLQVLINATLAEV 499 Query: 206 RRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 + Q G Q + G S G S + V G + + +L A Sbjct: 500 TLNKNLQYGVQFFLQKNHGKSGGIGFSTSDALAIAPVMPGLNLIAGNIGSDP--RVILDA 557 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------VSSSTGATSVTTHDYGVV 315 L + TA+R ++ P++ + Q A G Q T S + + GV+ Sbjct: 558 LAKETAVRIVSSPSVVVLHNQQAILEVGDQVPIITREAQSVINPDSPTVNEIEFKNTGVI 617 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVL 370 L+ TP + S G + + +Q EVS D P+ R+ +T+ + SG +VL Sbjct: 618 LNVTPRINSNGLVTMEVQQEVSAVQNTSGQSDAATSLTPTISQRRVTSTIAVQSGQMVVL 677 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIFIAATPFLVK 420 GL+++++ + K IP+++KIP LG + N R TE+ + P +++ Sbjct: 678 GGLIREEVSRSKSSIPVINKIPYLGDVLGGETDNGRTRTELVVFIRPIVIR 728 >gi|224373395|ref|YP_002607767.1| type II and III secretion system protein [Nautilia profundicola AmH] gi|223589657|gb|ACM93393.1| type II and III secretion system protein [Nautilia profundicola AmH] Length = 449 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 95/252 (37%), Gaps = 19/252 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +N LN +V + V I V + G S S S A S Sbjct: 180 DRYINDLNNRLHKEVLIDVKIYSVTLSSSHKTGIDWSQL------SLSLADKSVPITASN 233 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----T 297 + F+ +L+ L + + +++ P + ++ Q A G YK Sbjct: 234 IIGANAVFKEATFNVGGLLNFLAQNGNVNSISNPKIVTLNNQKALIKVGDTIYYKYASEI 293 Query: 298 VSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGDM 348 + + G + GV+L TP + G I L I +S + VN Sbjct: 294 TTDNNGNPTTEYTIDSKFVGVLLDITPQISDNGEIILSINPRISAFKDATQLSNVNRDMP 353 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + V+L T+VL GL+ DD Q G+P+L +IPI+ LF + + Sbjct: 354 PDTQDNTMISVVKLKDNDTLVLGGLITDDKQLKVNGVPVLKEIPIIKYLFSSREEITTKK 413 Query: 409 EIFIAATPFLVK 420 E+ TP ++ Sbjct: 414 ELVFVITPHIID 425 >gi|289667997|ref|ZP_06489072.1| fimbrial assembly protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 631 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 104/272 (38%), Gaps = 34/272 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 +++++ ++ DQV ++ I + +G + I G + Sbjct: 355 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIAGRQQYGGNTGVISGSTTNNVS 413 Query: 230 --------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 F G + G + + F+ + L A++ ++ P Sbjct: 414 ILNSGIHNVPGGLNFNLPAGTFTTNTAGAIAYTLLGRNFALDMELSAMQEEGRGEVVSNP 473 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLR 331 + + + G + Y T+S +V + + L TPT+ + R+ L Sbjct: 474 RIVTSNQREGVIKQGREIGYVTISGGGAGGQSQANVQFKEVLLELKVTPTITNDNRVFLN 533 Query: 332 IQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + + E ++ G +P R+ +T V + G T+V+ G+ + ++ +P L Sbjct: 534 MNVKKDEVARFIDLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESIAKVPFL 593 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP LG LF+ ++E+ E+ + TP +++ Sbjct: 594 GDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 625 >gi|197117672|ref|YP_002138099.1| type II secretion system secretin lipoprotein PulQ [Geobacter bemidjiensis Bem] gi|197087032|gb|ACH38303.1| type II secretion system secretin lipoprotein PulQ [Geobacter bemidjiensis Bem] Length = 868 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 71/346 (20%), Positives = 135/346 (39%), Gaps = 43/346 (12%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 VRT+ ++ E ++K++ ++ + V L+V + E+ + Sbjct: 286 VRTMLQVKKIYVNEEANALVIRDTPEVIEVARKILEANDVPDAE-VLLEVEVFELSKQNA 344 Query: 211 KQIGF-------QHSITGSSSGPSKSFAADFGGKFV---------SEGGDFSVKGVLDRF 254 + G +T S + F AD G S G ++ V + Sbjct: 345 ETFGLLLSRYATSLGVTAPGSTGTNPFLADTLGAVTTTTTTGTTTSSAGPSNLLNVFNLR 404 Query: 255 SFE-------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---A 304 + + + + TL+ P + + + A F G + T SS +G + Sbjct: 405 GYNGYLTVPNATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRVPITTTSSPSGGGVS 464 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTT 359 +V D GV ++ PT+ + +++ EVS + A + + R DT Sbjct: 465 VNVQYVDVGVKVNAEPTIQLNNEVAIKLGLEVSSILNEKTIGTDQATTVVTIGTRNLDTV 524 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T ++ GL++ K + LL IPILG LF N+ +++TE+ +A TP +V Sbjct: 525 LSLKDGETSIIGGLIQKTQTDSKSKVFLLGDIPILGPLFSNTSDKKDKTELLLAITPRIV 584 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 + V + D +D AF+ R ++ + S ++ Sbjct: 585 RGVTVPD-----------NDVAAFWSGREDEPSSHQPYSSFMEPDF 619 >gi|188578246|ref|YP_001915175.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522698|gb|ACD60643.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 655 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 111/286 (38%), Gaps = 48/286 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------------- 222 +++++ ++ DQV ++ I + +G + I G+ Sbjct: 365 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNT 423 Query: 223 ---------SSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261 + G S + A GG + G + + F+ + L Sbjct: 424 SAKRASEIANGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELS 483 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLH 317 A+++ ++ P + + + G + Y T+S S +V + + L Sbjct: 484 AMQQEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELK 543 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPT+ + R+ L + + E ++ G +P R+ +T V + G T+V+ G+ Sbjct: 544 VTPTITNDNRVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVY 603 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 604 EFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 649 >gi|171913118|ref|ZP_02928588.1| probable general secretion pathway protein D [Verrucomicrobium spinosum DSM 4136] Length = 888 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 123/290 (42%), Gaps = 35/290 (12%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS----ITGSSSGPSKSFAA---------------- 232 QV L I ++ Q+G + TGS+SG S +F A Sbjct: 571 SPQVYLATVIGQLTLSDGMQMGVDYLQKFVSTGSNSGLSSAFIAGREEIITNNNVADMRD 630 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + ++ F++ G L + S + + ALE + L+ P++ A++ + A TSG Sbjct: 631 NLITTALANAKGFNIYGQLGQ-SLDVFVSALETTNNFKVLSRPSVFALNNKRAVITSGQS 689 Query: 293 HLYKTVS----------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 S + T++T D + L P + G + LR+ V Sbjct: 690 IPVPESSLANASSNNNGTGNVTTTITYKDVVLKLEVIPLINPDGDVTLRVAQVNDTVVGN 749 Query: 343 --VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 V ++P + TTV +P+G T+VL GL+ + ++ EGIP+LS+IP LG LFR Sbjct: 750 QIVAQNNVPIIGTEQIATTVTVPTGNTVVLGGLITETDKKDTEGIPVLSRIPGLGRLFRE 809 Query: 401 SRFNREETEIFIAATPFLVKP--VAMRDLSRPDDHYSVEDDAKAFFFNRV 448 ++E E+ I P +V R R D V +DA F +RV Sbjct: 810 DVTSKERKELVIFIQPMVVNDDGSLQRASLREDLRTKVGEDAYKVFPDRV 859 >gi|46199319|ref|YP_004986.1| competence protein pilQ [Thermus thermophilus HB27] gi|17226359|gb|AAL37751.1|AF436067_5 putative secretin PilQ [Thermus thermophilus HB27] gi|46196944|gb|AAS81359.1| competence protein pilQ [Thermus thermophilus HB27] Length = 757 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 10/234 (4%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L+V I EV+ ++ + +G + + G + D G + F L Sbjct: 532 PQVNLRVRIQEVQSNLTRSLGLKW--NSIAGGNVAASILDSGLSLI-----FDSTRSLAA 584 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + L AL++ R L + T ++ Q+A SG + V + D G Sbjct: 585 LNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVND--QVERVPFDVG 642 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 +++ TP + + G+I L I+ EVS V GD+ + + TT+ + G T+VL G Sbjct: 643 LIVEVTPQITADGQILLNIKAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVKDGETVVLGG 702 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L + Q ++G+PLL IP++G LF+ + E+ + T ++K A + Sbjct: 703 LTSQESNQSQQGVPLLMDIPLIGELFKQRTNESTDKELLVVITADILKEAASAN 756 >gi|163781944|ref|ZP_02176944.1| putative type II secretion system protein [Hydrogenivirga sp. 128-5-R1-1] gi|159883164|gb|EDP76668.1| putative type II secretion system protein [Hydrogenivirga sp. 128-5-R1-1] Length = 518 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 104/248 (41%), Gaps = 19/248 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV ++ I E+ + Q G S + + + GG FS+ V Sbjct: 273 KQVLIEAKIVEIALSDVFQYGIDWSTFFRDVFGTGANVTLSQTLSIPTGGFFSLNVVSS- 331 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTTH 310 F T+++AL + TL+ P + +GQ+A +G + + V+ + T+ Sbjct: 332 -DFSTLVNALATYGKVYTLSNPRIMVSNGQTALIATGIVTPFFERQAVTITGTTTTQIQE 390 Query: 311 DY-------GVVLHFTPTVLSPGRIGLRIQT-------EVSEPVIGVNAGDMPSYRVRKA 356 + GV+L TP + G I + I + V G + P +++ Sbjct: 391 NIVKTNVLEGVLLGVTPYIDDNGSIVMNIIPVATRLEGSKTLEVNGQVLAEAPILNIKET 450 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V + +G +V+ GL+ D + +P L IP+LG LF++ R +E+ E+ I P Sbjct: 451 GTIVRVRNGELVVIGGLIGDVRSVQERKVPGLGDIPVLGYLFKSKRTVKEKRELIIFLRP 510 Query: 417 FLVKPVAM 424 ++ + + Sbjct: 511 RIIDNIGL 518 >gi|153868094|ref|ZP_01998196.1| Bacterial type II and III secretion system protein [Beggiatoa sp. SS] gi|152144586|gb|EDN71804.1| Bacterial type II and III secretion system protein [Beggiatoa sp. SS] Length = 219 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 3/197 (1%) Query: 225 GPSKSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G ++F + G + + + L A++ + ++ P + + Q Sbjct: 23 GQGENFIVSLPAIVEGTPASLGLAIGKIGSYLLQLELSAMQSEGSGEIISSPRIITGNQQ 82 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 A T G + Y + V + L TP + RI + + + + Sbjct: 83 EAIITQGSEIPYVESAGVGAVAQVQFKQAVLELKVTPQITPDDRINMELSIKKDSVGARI 142 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 N S R+ T V + +G T+VL G+ + +P LS +P++G LF+ Sbjct: 143 NGN--ISIDKREVKTNVLVDNGDTVVLGGVYERSSSNNITRVPFLSDLPLIGNLFKRRSS 200 Query: 404 NREETEIFIAATPFLVK 420 +++E+ I TP ++K Sbjct: 201 QDDKSELLIFVTPRIIK 217 >gi|294793490|ref|ZP_06758627.1| bacterial type II and III secretion system protein [Veillonella sp. 3_1_44] gi|294455060|gb|EFG23432.1| bacterial type II and III secretion system protein [Veillonella sp. 3_1_44] Length = 412 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 75/312 (24%), Positives = 135/312 (43%), Gaps = 21/312 (6%) Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 +LI+ D LE I+ ++ E L +V T+ + + LSE Sbjct: 117 TLLIDSDDETLEKRELYVISPEHLPAES------LKNVVGTVVKNDKMAVLSEQNEVIMH 170 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKS 229 + ++ ++ QV L+ TI + + K+ GF+ S TG + S Sbjct: 171 LTSGEKRRVETLVRAID-KEPKQVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHS 229 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + A GK + G +F + L +E + +A+P++ A++G++A Sbjct: 230 YGAVTFGKTPT--------GEAYKFFVKPELSLMESSGKAVLIAKPSIMALNGETAHILI 281 Query: 290 GGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + S G S + G+ L++TP + + + +I EVS P++ V+ Sbjct: 282 GERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITADDGVDAKIHAEVSTPIM-VSEMK 340 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 R+A T V L G +V+ GL+ + Q + IP+L IP+LG LFR+SR ++ Sbjct: 341 AYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDS 400 Query: 408 TEIFIAATPFLV 419 E+ + +V Sbjct: 401 IEMLMLVRATVV 412 >gi|307720197|ref|YP_003891337.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] gi|306978290|gb|ADN08325.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] Length = 709 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 115/254 (45%), Gaps = 20/254 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q ++VT+A+V +GF+++IT ++G K+ GG + V Sbjct: 454 PLQTLVEVTVADVDMTDTFSLGFEYAITNQNAGLVKNI-------LNITGGGSGLGVVFK 506 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----------SSST 302 E+ ++A + +++P L ++ ++ + G Q T S + Sbjct: 507 GNHLESTINAYAEKKLLDIISKPKLLILNNKTGNINVGTQVPIITSQVSAADLGSSSQPS 566 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVE 361 +++ + G++L+ TPT+ S G + + I +S+ + + + P R TT Sbjct: 567 INQNISYKNTGIILNITPTINSNGVLTMNISITLSDAQLNDTSTINSPLIINRSLQTTAV 626 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + SG +I+L GL+ + + K G+PLL IP +G +F ++ ++E+ I P ++K Sbjct: 627 VQSGDSILLGGLISQNKSKSKGGVPLLKDIPWIGNMFASNSIKTTKSELIILIRPVIIK- 685 Query: 422 VAMRDLSRPDDHYS 435 ++++ + Sbjct: 686 -TPQEINSETYKFK 698 >gi|167032058|ref|YP_001667289.1| general secretion pathway protein D [Pseudomonas putida GB-1] gi|166858546|gb|ABY96953.1| general secretion pathway protein D [Pseudomonas putida GB-1] Length = 584 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 103/267 (38%), Gaps = 26/267 (9%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + ++ L+I QV ++ IAEV +++G Q G G Sbjct: 272 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 330 Query: 239 --------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G + F+F +++AL+ + L+ PTL Sbjct: 331 ANIAGAAASGDNEALGDLLSTTAGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLL 390 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + AS G + + T S + ++ + GV L P + + L I Sbjct: 391 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQ 450 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EVS A D+ + R+ T V + G ++L GL+ D++ + +PLL IP L Sbjct: 451 EVSSIADSSAASDVIT-NKREIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYL 509 Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421 G LFR+ + + + P +++ Sbjct: 510 GRLFRSDASKNTKQNLMVFIRPRILRD 536 >gi|57169056|ref|ZP_00368183.1| general secretory pathway protein D [Campylobacter coli RM2228] gi|305432265|ref|ZP_07401428.1| general secretory pathway protein D [Campylobacter coli JV20] gi|57019514|gb|EAL56205.1| general secretory pathway protein D [Campylobacter coli RM2228] gi|304444613|gb|EFM37263.1| general secretory pathway protein D [Campylobacter coli JV20] Length = 472 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 109/270 (40%), Gaps = 16/270 (5%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K + L + QV + V+I V + G S + + + Sbjct: 202 KAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNFNIGLNSQTSDNTNSFMQIQNG 261 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G G+ +F+++++ L ++ L+ P L A++ Q A + G Y+ SS Sbjct: 262 QGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKESS 321 Query: 302 TGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA------- 345 G + TT G++L+ P + G+I LRI +S+ + Sbjct: 322 KGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPR 381 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P +K + V++ + T++L GL+ + Q + LSKIPILG+LFR+ N Sbjct: 382 TIAPDTIQKKLSSVVQVENNQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENS 441 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 TEI TP +V + L Y+ Sbjct: 442 NITEIVFIITPSIVDNTHIPSLRELGFKYN 471 >gi|118592650|ref|ZP_01550040.1| general secretion proteinD [Stappia aggregata IAM 12614] gi|118434701|gb|EAV41352.1| general secretion proteinD [Stappia aggregata IAM 12614] Length = 789 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 128/289 (44%), Gaps = 16/289 (5%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------KKVMNLLNIAGEDQVTLK 199 L G + + D++R+ E + + + N S + V+ L++ QV ++ Sbjct: 445 LSGRLNRLADTRRSSEEAVSIVPDVRNNALLVHSKFRQFKRIRDVVRTLDVPLA-QVVIE 503 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 TI EV + + G Q ++G S D +D + V Sbjct: 504 ATIVEVALNDRLKYGVQAFLSGEGVEIRSSRLPDPADTGEPGAVALFDVDSVDGTTATFV 563 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-------ATSVTTHDY 312 L AL+ T ++ ++ P LT + G++A + G Q + ++ + D Sbjct: 564 LEALQTVTELKVISSPYLTVLDGKAARLSVGDQIPFLVQQTNASETGTTTTTNQIEVRDV 623 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLA 371 GV+L TP++ + L +Q EVS + ++ P R ++ V + SG +L Sbjct: 624 GVILQVTPSIRPDNSVLLNVQQEVSSAKSSGSGENLTPVISQRTINSDVVIESGKMALLG 683 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GL++ +++ +PL+SK+PI+G LF+ + ++ TE+ + TP +V+ Sbjct: 684 GLIQSRSEEVTTKVPLMSKMPIVGNLFKQTDAVKDRTELLVMITPRVVR 732 >gi|320451127|ref|YP_004203223.1| general secretion pathway protein [Thermus scotoductus SA-01] gi|320151296|gb|ADW22674.1| general secretion pathway protein [Thermus scotoductus SA-01] Length = 754 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 74/310 (23%), Positives = 129/310 (41%), Gaps = 17/310 (5%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 L L+ + +V T Q + A E + T + + Sbjct: 461 NAKATELAKVLQEALQARQAQVPQSQAQP----QAPTRQATVVADERTNTLIVTGTQEDL 516 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 A + ++ L+ A QV L+V I EV+ + + +G + + + G + D G Sbjct: 517 A--LVEGLIPKLDQAVP-QVNLRVRIQEVQSNFTRNLGIKWNTI--AGGNVAASILDSGL 571 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + F L + L AL+R R L + T ++ Q+A SG L + Sbjct: 572 SLI-----FDSTRSLAALNILATLEALQRQGLSRALRDVNQTVLNNQTARLQSGETFLIR 626 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRK 355 V + D G+++ TP + + G+I L I+ EVS V GD+ + + Sbjct: 627 RVVNDR--VERVPFDIGIIVEVTPQITADGQILLNIKAEVSGNVQRNPVDGDVDRFTKQV 684 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 TT+ + G T+VL GL + Q+++G+PLL IP++G LF+ + E+ + T Sbjct: 685 VTTTLRVRDGQTVVLGGLTSQENTQVQQGVPLLMDIPLIGELFKQRSQETTDRELLVVIT 744 Query: 416 PFLVKPVAMR 425 ++K A R Sbjct: 745 ADILKETASR 754 >gi|119898381|ref|YP_933594.1| general secretion pathway protein D [Azoarcus sp. BH72] gi|119670794|emb|CAL94707.1| general secretion pathway protein D [Azoarcus sp. BH72] Length = 675 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 74/335 (22%), Positives = 136/335 (40%), Gaps = 45/335 (13%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 D +R+ + ++ V+ + VV+ +D+ AV L+E Sbjct: 280 NADAKQAMTMVRQLVKSKDVFVDEKLNMVVI-------KDTPDAVRLAE----------- 321 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAA 232 +V+ L++A + V L+V + EV R+ L+ +G ++ + + + Sbjct: 322 ------RVLASLDVAEPE-VMLEVEVLEVSRNKLQDLGIEYPTQVGYGLLTPNVTSTVST 374 Query: 233 DFGGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISG 282 G + G KG+++ + VL+ LA P + + Sbjct: 375 AAGFATSTTLGGELAKGMINLRDRGSLVPYVSNPGAVLNLRAEDGDTSLLANPRIRVKNR 434 Query: 283 QSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + A G + T +++ + SV D G+ L P V + +++ EVS Sbjct: 435 EKAKIHIGEKLPVFTTTATANVGVSASVNYLDVGLKLDVEPAVTLEDEVVIKVALEVSSI 494 Query: 340 VIGVNAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 V V R A TT+ L +G T VLAGL+ D+ + +P L ++P++G Sbjct: 495 VKEVTGPSSSLAYQVGTRSAATTLRLANGETQVLAGLINDEERSSARRLPGLGELPVVGR 554 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 LF R + +TE+ + TP +V+ V L+R D Sbjct: 555 LFSAQRDSNTKTEVVLLITPRIVRNVVAPSLARAD 589 >gi|55981352|ref|YP_144649.1| general secretion pathway protein PilQ [Thermus thermophilus HB8] gi|55772765|dbj|BAD71206.1| general secretion pathway protein (PilQ) [Thermus thermophilus HB8] Length = 757 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 106/234 (45%), Gaps = 10/234 (4%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV+L+V I EV+ ++ + +G + + G + D G + F L Sbjct: 532 PQVSLRVRIQEVQSNLTRSLGLKW--NSIAGGNVAASILDSGLSLI-----FDSTRSLAA 584 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + L AL++ R L + T ++ Q+A SG + V + D G Sbjct: 585 LNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVND--QVERVPFDVG 642 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 +++ TP + + G+I L I+ E+S V GD+ + + TT+ + G T+VL G Sbjct: 643 LIVEVTPQITADGQILLNIKAEISGNVQRNPVDGDVDRFTKQVVTTTLRVKDGETVVLGG 702 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L + Q ++G+PLL IP++G LF+ + E+ + T ++K A + Sbjct: 703 LTSQESNQSQQGVPLLMDIPLIGELFKQRTNESTDKELLVVITADILKETASAN 756 >gi|260220229|emb|CBA27559.1| Fimbrial assembly protein pilQ [Curvibacter putative symbiont of Hydra magnipapillata] Length = 696 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 104/262 (39%), Gaps = 28/262 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------------SITG 221 ++++ ++IA QV ++ I E K +G + + G Sbjct: 432 QQLIAKIDIA-VRQVLIEARIVEASDSFGKSLGVKLGGGGTAAASGDKPGIALGSSYVVG 490 Query: 222 SSSGPSKSFAA--DFGGKFVSEGGDFSVK--GVLDRFSFETVLHALERATAIRTLAEPTL 277 S++ S +F G S G F+V G + ALE + ++ P + Sbjct: 491 SAATTSGNFVNLPSTGALGSSTPGQFAVSIFGAGADRFLNLEISALEAEGKGKVVSSPRV 550 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 A G + Y+ SSS GATS+ + L P + G I L + +V+ Sbjct: 551 VTADQIKALIEQGTELPYQVASSS-GATSIAFRKANLKLEVLPQITPEGNIILTL--DVT 607 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + +G + + + T V + +GGT+V+ G+ + + +P +P LG L Sbjct: 608 KDTVGQSTPAGFAIDTKHVQTQVLVENGGTVVIGGIFTESSTDSETKVPFFGDLPGLGVL 667 Query: 398 FRNSRFNREETEIFIAATPFLV 419 FRN + E+ + TP ++ Sbjct: 668 FRNRAKEITKREMLVFITPKVI 689 >gi|153802182|ref|ZP_01956768.1| general secretion pathway protein D [Vibrio cholerae MZO-3] gi|124122256|gb|EAY40999.1| general secretion pathway protein D [Vibrio cholerae MZO-3] Length = 404 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 61/324 (18%), Positives = 123/324 (37%), Gaps = 47/324 (14%) Query: 148 HGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G T + ++ + ++T Q ++ +V+ L+I QV ++ I E+ Sbjct: 26 TGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVEMA 84 Query: 207 RDILKQIGFQHSI-----------TGSSSGP----------------------------S 227 +G Q TG+S G + Sbjct: 85 EGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNET 144 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 + D+ + + + +++A+ ++ L+ P++T + ASF Sbjct: 145 TTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASF 204 Query: 288 TSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 G + T S++ +V + G+ L P + + L I+ EVS V+G Sbjct: 205 IVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN-VLG 263 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 N + R+ +T+V + G +VL GL+ + + + +PLL IP+LG LFR++ Sbjct: 264 ANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTS 323 Query: 403 FNREETEIFIAATPFLVKPVAMRD 426 E+ + + P +++ D Sbjct: 324 SQVEKKNLMVFIKPTIIRDGVTAD 347 >gi|255595286|ref|XP_002536270.1| Fimbrial assembly protein pilQ precursor, putative [Ricinus communis] gi|223520239|gb|EEF26113.1| Fimbrial assembly protein pilQ precursor, putative [Ricinus communis] Length = 536 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 113/271 (41%), Gaps = 37/271 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD----FGGK 237 ++++N ++I QV ++ I + K +G + + +++ +K G Sbjct: 263 QEILNKIDIP-SRQVLIESRIVQANDTFGKSLGARFGVVKNNALTAKGLNPGNDVLTSGS 321 Query: 238 FVS-----------------------------EGGDFSVKGVLDRFSFETVLHALERATA 268 S ++ + F L A E + Sbjct: 322 LSSTYATGQAKQTTTPDDLNVNLPASATAGTVSSAALTLLRLPAGFLLNMELSAAESDSK 381 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 I+T++ P + + Q+A+F +G + Y+ +SS GATSV+ + ++ TP + +I Sbjct: 382 IKTISSPRVITANQQTATFDAGTEIPYQQATSS-GATSVSFKKATLGVNVTPQITPDDKI 440 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I EV++ +G +PS K T V + +G T VL G L + + +P Sbjct: 441 NLDI--EVTKDDVGQIFNGVPSIDTNKVKTKVLVDNGETAVLGGFLIESKNDSNQRVPFF 498 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 S IP++G LF+++ + E+ TP ++ Sbjct: 499 SSIPVVGNLFKSTLNTHSKKELLFFITPKIM 529 >gi|239814080|ref|YP_002942990.1| general secretion pathway protein D [Variovorax paradoxus S110] gi|239800657|gb|ACS17724.1| general secretion pathway protein D [Variovorax paradoxus S110] Length = 774 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 63/309 (20%), Positives = 120/309 (38%), Gaps = 42/309 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAA------ 232 + V++ L+ QV ++ I EV G Q + G + S A+ Sbjct: 407 RAVIDKLD-GRRAQVMIEALIVEVSAKKAANFGVQWQSALGNNAVIGTNSSLASANILAL 465 Query: 233 -------DFGGKFVSEGGDFSVKG-VLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 D S G + + G + ++ + + L+ P L + + Sbjct: 466 TQALATRDVANVRPSSGLNLGIAGKIGGQYILGAIANFFNSDGDANVLSTPNLLTLDNEE 525 Query: 285 ASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 A G + T ++ + T+V D G+ L PT+ G + + I E Sbjct: 526 AKIVIGQNVPFVTGQYASTSGSVGINPFTTVERKDVGLTLRVRPTINENGTVKMTIFQET 585 Query: 337 SEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S +N + P+ R +++V + GG ++L GLL DD E +P+ IP+LG Sbjct: 586 STVDGNTINNPNGPTTNKRSIESSVLVEDGGLVMLGGLLSDDYGNTIEKVPVAGDIPVLG 645 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 LF+N R ++ + + P +++ A +AF ++R ++I G + Sbjct: 646 NLFKNEIRTRNKSNLMMFLRPAVMRDGA---------------STEAFAYDRYDEIRGMQ 690 Query: 456 EASEVEGQN 464 + ++ N Sbjct: 691 QRTQPNTDN 699 >gi|119475553|ref|ZP_01615906.1| Type II secretory pathway, component PulD [marine gamma proteobacterium HTCC2143] gi|119451756|gb|EAW32989.1| Type II secretory pathway, component PulD [marine gamma proteobacterium HTCC2143] Length = 558 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 65/303 (21%), Positives = 117/303 (38%), Gaps = 26/303 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 VL G ++ +R + + + ++++ +N + QV L+ I EV Sbjct: 231 VLVGT----EEGRRVIVTPQAGIIIVRAMPAEIDAAREFLNRAEVIMRRQVVLEAKILEV 286 Query: 206 RRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-SFETVLHAL 263 + Q G Q S+ G+ +G + F S + V + F V+ L Sbjct: 287 ELNDGYQTGIQWESMGGTLNGNTLDFGVSGSSPVSSNSVGGAFSAVYESVGDFSGVIELL 346 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----------TGATSVTTHDY 312 E +++ L+ P ++ ++ Q A G + T S+ +T Sbjct: 347 ETQGSVQVLSSPRISTVNNQKAVIKVGTDEFFVTEISNSTTTSTGATTSNPEIELTPFFS 406 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPS--YRVRKADTTVELP 363 G+ L TP + I L I +SE +G ++P +R+ D+ V Sbjct: 407 GIALDVTPQISDNDEIILHIHPSISEVRDQTKVITLGDQTVEVPLALSTIRETDSIVYAR 466 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 SG +VL GL++ G P+L +P +G LF R + E+ I P ++ P Sbjct: 467 SGQVVVLGGLMQTKSVDNNSGTPVLGNLPGVGHLFSQQRNKTVKNELVILLRPVIMGPSG 526 Query: 424 MRD 426 + D Sbjct: 527 LPD 529 >gi|282848997|ref|ZP_06258386.1| bacterial type II and III secretion system protein [Veillonella parvula ATCC 17745] gi|282581272|gb|EFB86666.1| bacterial type II and III secretion system protein [Veillonella parvula ATCC 17745] Length = 440 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 76/312 (24%), Positives = 135/312 (43%), Gaps = 21/312 (6%) Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 +LI+ D LE I+ ++ E L +V T+ + + LSE Sbjct: 145 TLLIDSDDETLEKRELYVISPEHLPAES------LKNVVGTVVKNDKMAVLSEQNEVIMH 198 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKS 229 + ++ ++ QV L+ TI + + K+ GF+ S TG + S Sbjct: 199 LTSGEKRRVETLVRAID-KEPKQVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGEDKTHS 257 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 + A GK + G +F + L +E + +A+P++ AI+G++A Sbjct: 258 YGAVTFGKTPT--------GEAYKFFVKPELSLMESSGKAVLIAKPSIMAINGETAHILI 309 Query: 290 GGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 G + S G S + G+ L++TP + + + +I EVS P++ V+ Sbjct: 310 GERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITADDGVDAKIHAEVSTPIM-VSEMK 368 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 R+A T V L G +V+ GL+ + Q + IP+L IP+LG LFR+SR ++ Sbjct: 369 AYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQKIPILGDIPLLGKLFRHSRKTKDS 428 Query: 408 TEIFIAATPFLV 419 E+ + +V Sbjct: 429 IEMLMLVRATVV 440 >gi|254498863|ref|ZP_05111570.1| putative MSHA biogenesis protein MshL (pilus type IV) [Legionella drancourtii LLAP12] gi|254351917|gb|EET10745.1| putative MSHA biogenesis protein MshL (pilus type IV) [Legionella drancourtii LLAP12] Length = 578 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 113/262 (43%), Gaps = 25/262 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ ++++ + + QV L+ I EV + Q+G + G+S +F + Sbjct: 265 ERYLDMVQNSMDRQVILEAKILEVNLNNQFQMGINWKLFGASLNALSNF-PEVDIAQADF 323 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 F V + F +V+ ALE ++ L+ P ++A++ QSA+ G + T S Sbjct: 324 PSAFDVDVHWNPKDFTSVIQALETQGNVQVLSSPRVSAMNNQSAAIKVGFDEFFVTNVSQ 383 Query: 302 TGA-------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------VI 341 ++T G+ L TP + + G++ L + VS + Sbjct: 384 NQNIVTSSLVTQPILNVNLTPFFSGITLDVTPQIDANGQVTLHVHPTVSLVKDQRKVIDL 443 Query: 342 GVNAG----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G G + + +R++DT V +G +V+ GL++D + +P IP LG L Sbjct: 444 GTQGGILNLPLANSTIRESDTIVHAKTGQVVVIGGLMQDTTSEGIGQVPWFGNIPFLGTL 503 Query: 398 FRNSRFNREETEIFIAATPFLV 419 R ++ +++E+ I P LV Sbjct: 504 VRATKQTSQKSELVILLRPTLV 525 >gi|288574989|ref|ZP_06393346.1| type II and III secretion system protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570730|gb|EFC92287.1| type II and III secretion system protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 570 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 87/437 (19%), Positives = 155/437 (35%), Gaps = 92/437 (21%) Query: 55 NKVIILQVP-VDVQDVL-----------VSDPTKADVVVHS-------PRTMY-----LF 90 N+ I + VD+QDV V DP+ A++ + R ++ L+ Sbjct: 162 NRRISVDFRSVDIQDVFRMLADMMKVNIVLDPSVAEIPPLTMRFDEAPLREVFGYLMRLY 221 Query: 91 G---KNVGQANVI--------LIGHDGKQMLNLDILIERDIAHLEMTL--RRFIADSNIR 137 G VG+ VI ++G + ++ ++ D+ L L I I Sbjct: 222 GLSYAKVGKTLVIGSPEGISKVMGEEKTRVYDVA---YSDVKTLPDMLGGLTTIPKEKIT 278 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V+ + + G + D +R ++ + QV Sbjct: 279 VDERLGRLFVKGSENQLSDFERVLQTVDD-------------------------PGKQVM 313 Query: 198 LKVTIAEVRRDILKQI-------GFQHSITGSSSGPSKSF-------------AADFGGK 237 L+ I E++ + ++ ++ SSSG + D G Sbjct: 314 LRARIIEIKDEASDELETMLNAVYKHWWLSTSSSGAEGGYSYVKDPDSYNPPTGEDRPGG 373 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G + G +T L AL A + LA P++ +SGQ AS Y + Sbjct: 374 IEFPGIEIPDIGTGGIRLLDTGLKALVTANKGKVLANPSVITVSGQKASIKLVENLKYIS 433 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVR 354 G + + + G L FTP V G I + + E + G + P R Sbjct: 434 ARDDAGNPTYSDEEVGPKLEFTPLVGRDGVISVELSIATGEVIAWKEGNQGEEFPQTSER 493 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + T++ + G V+ GL + + IP+L IP+LG F++ + TE+ + Sbjct: 494 EVVTSIRVRDGEPFVVGGLFNERHTENTTKIPILGDIPLLGEFFKSKSKTDDRTEVVMVV 553 Query: 415 TPFLVK----PVAMRDL 427 P+++ P+ DL Sbjct: 554 IPYILNVTDGPIERWDL 570 >gi|297570248|ref|YP_003691592.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] gi|296926163|gb|ADH86973.1| type II and III secretion system protein [Desulfurivibrio alkaliphilus AHT2] Length = 532 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 103/254 (40%), Gaps = 16/254 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-S 240 ++ ++ L Q++++ I EV D + G S + G + Sbjct: 279 EEYLDNLKSRLFRQISIEAKIVEVNLDEQHKSGIDWRGVLSGKHLNFELFGPEGIIYPWD 338 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KT 297 G + + F+ +L A+E A LA P ++ ++GQ A T G Y Sbjct: 339 AAGGGVTQATIGPNPFQVLLDAIETQGAADVLANPKISVMNGQPALITVGETFRYISQVE 398 Query: 298 VSSSTG---ATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------A 345 ++ TG +TSVTT G+ L PT+ I L + S + Sbjct: 399 TTTDTGGGISTSVTTDTVMSGLGLAVLPTITDQNEIVLSLTPVTSSLTQPMQERTFQGMT 458 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P +R+ ++ V++ G T+++ GL+ + +P+L IPILG LF + Sbjct: 459 VQLPQINIRELNSVVKVRDGDTLMIGGLIDNVQDSTSHRVPILGNIPILGKLFSHETKTS 518 Query: 406 EETEIFIAATPFLV 419 + E+ I P ++ Sbjct: 519 RKRELVILLQPTII 532 >gi|531740|emb|CAA56979.1| xcpQ [Pseudomonas putida] Length = 591 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 103/267 (38%), Gaps = 26/267 (9%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + ++ L+I QV ++ IAEV +++G Q G G Sbjct: 276 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 334 Query: 239 --------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + G + F+F +++AL+ + L+ PTL Sbjct: 335 ANIAGAAAGEDTEALGKLLSATAGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLL 394 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + AS G + + T S + ++ + GV L P + + L I Sbjct: 395 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQ 454 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EVS A D+ + R+ T V + G ++L GL+ D++ + +PLL IP L Sbjct: 455 EVSSIADSSAASDVIT-NKREIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYL 513 Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421 G LFR+ + + + P +++ Sbjct: 514 GRLFRSDASKNTKQNLMVFIRPRILRD 540 >gi|297539729|ref|YP_003675498.1| type IV pilus secretin PilQ [Methylotenera sp. 301] gi|297259076|gb|ADI30921.1| type IV pilus secretin PilQ [Methylotenera sp. 301] Length = 728 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 3/199 (1%) Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 +SS ++ + +S+ L A+E + ++ P +T + Sbjct: 527 TSSDGLPDLMSNLAVANATGSIAYSIFSKAAGLVLNMELTAMESDGHGKIVSSPRVTTAN 586 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 A +G + Y SSS GA +V+ + L TP + +I + + + + Sbjct: 587 QHKAKIAAGTEIPYLEASSS-GAATVSFKSAVLSLEVTPQITPDDKIIMELDVKKDR--V 643 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G +PS + +T V + +G T VL G+ + ++ E +P +PI+G LF+ Sbjct: 644 GQVFSGVPSIETQNINTQVLVGNGETAVLGGIFEQTVRNDVEKVPFFGDLPIMGNLFKKR 703 Query: 402 RFNREETEIFIAATPFLVK 420 ++ E+ I TP ++ Sbjct: 704 TTQNDKQELLIFITPRIMD 722 >gi|195952458|ref|YP_002120748.1| general secretion pathway protein D [Hydrogenobaculum sp. Y04AAS1] gi|195932070|gb|ACG56770.1| general secretion pathway protein D [Hydrogenobaculum sp. Y04AAS1] Length = 660 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 59/281 (20%), Positives = 109/281 (38%), Gaps = 27/281 (9%) Query: 178 NSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-- 233 S + + NL+ E QV + ++ E G G + G + A+ Sbjct: 366 KSQYENLKNLIKKLDEKRIQVLIAASVVEANLTKQLTTGVNWQALGKNGGIGFNPASLQT 425 Query: 234 -----FGGKFV-----SEGGDFSVKG-VLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G FV S +V G + L LE+ + ++ P + + Sbjct: 426 IYQGLLSGNFVVGVTSSSSISANVGGNTIIFPDLAVFLSLLEQGNGFKIISNPKVLTLDN 485 Query: 283 QSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + A + Y T + + D G+ L PTV I L I + + Sbjct: 486 EEAIIKEAQVYPYVTGTQYNINGFPILTYDYKDIGLELDVIPTVSKDN-IRLGINLNLQD 544 Query: 339 PVIGVNAG------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 N +P R ++ V + SG T++L GL+ ++ + GIP+L IP Sbjct: 545 ITGFTNTNVAGQTVPIPITTDRVLNSEVVVKSGQTVILGGLVSNNTIKNISGIPILQDIP 604 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 +LG LF+ +++ +FI TP+++K P + +++ ++ Sbjct: 605 VLGNLFKYQNRENKKSTLFIFITPYIIKSPDQLAKITKANE 645 >gi|94266027|ref|ZP_01289748.1| type II and III secretion system protein [delta proteobacterium MLMS-1] gi|93453422|gb|EAT03844.1| type II and III secretion system protein [delta proteobacterium MLMS-1] Length = 577 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 19/257 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ ++ L QV ++ I EV + G + S G + + Sbjct: 321 EEYLDNLQQQLFRQVIIEAKIIEVTLSDEHRSGIDWTNVLSGKQLDFELFGPDGIIYHPD 380 Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + + FE +L A+E L+ P ++ ++GQ A G Y Sbjct: 381 RDQRGRGVSQISIGPNPFELLLEAIETQGETNVLSNPRISIMNGQPALINVGETVRYIAE 440 Query: 299 SSSTGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---- 347 +SST TH+ G+ + P ++ I L + ++ G + Sbjct: 441 ASSTIQDQGVTHNIITGTVMSGLSMSVLPIIVDDNEIILSMTPMTTQLAPGPIPREKFGD 500 Query: 348 -----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +P +R+ T V + +G T+++ GL+ + + +PLL IP LG LFR+ Sbjct: 501 NMLVQLPQINIREMQTMVRVANGDTLMIGGLIDEYETTESKRVPLLGDIPGLGKLFRHDT 560 Query: 403 FNREETEIFIAATPFLV 419 ++E+ E+ I P ++ Sbjct: 561 RSKEKKELVIMLRPRIL 577 >gi|94266705|ref|ZP_01290378.1| type II and III secretion system protein [delta proteobacterium MLMS-1] gi|93452646|gb|EAT03209.1| type II and III secretion system protein [delta proteobacterium MLMS-1] Length = 577 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 19/257 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ ++ L QV ++ I EV + G + S G + + Sbjct: 321 EEYLDNLQQQLFRQVIIEAKIIEVTLSDEHRSGIDWTNVLSGKQLDFELFGPDGIIYHPD 380 Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + + FE +L A+E L+ P ++ ++GQ A G Y Sbjct: 381 RDQRGRGVSQISIGPNPFELLLDAIETQGETNVLSNPRISIMNGQPALINVGETVRYIAE 440 Query: 299 SSSTGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---- 347 +SST TH+ G+ + P ++ I L + ++ G + Sbjct: 441 ASSTIQDQGVTHNIITGTVMSGLSMSVLPIIVDDNEIILSMTPMTTQLAPGPIPREKFGD 500 Query: 348 -----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +P +R+ T V + +G T+++ GL+ + + +PLL IP LG LFR+ Sbjct: 501 NMLVQLPQINIREMQTMVRVANGDTLMIGGLIDEYETTESKRVPLLGDIPGLGKLFRHDT 560 Query: 403 FNREETEIFIAATPFLV 419 ++E+ E+ I P ++ Sbjct: 561 RSKEKKELVIMLRPRIL 577 >gi|294056469|ref|YP_003550127.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] gi|293615802|gb|ADE55957.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] Length = 452 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 77/346 (22%), Positives = 138/346 (39%), Gaps = 23/346 (6%) Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G G + L ++ + I D E + I I V+ + VL Sbjct: 41 GLATGSLDEALQDDHAARLKDFQNQIAGDHDEFE---KDTIIYDCIYVQATTLRRVLEEF 97 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 + + +VE + +S N + K ++ L+ Q+ ++ I E+ Sbjct: 98 ITSNGMVAASVESDQIIVSDRSSNI---ALLKSIIQRLDKPVP-QILVEARIVELNISSD 153 Query: 211 KQIGFQHSITGSSSGPSKSFAA---------DFGGKFVSEGGDFSVKGVL---DRFSFET 258 + ++ P A + GG + G + + SF Sbjct: 154 LEREVDLYYQNIATDPLTGQLAIVDEIGSKLNVGGATPNTGQGGILNSQVWDNGGESFNA 213 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVL 316 + LE + + L+ P L G+ S +G + +T SS TS G+ L Sbjct: 214 FVRYLESSGKAKILSAPNLIIQRGKEGSIVTGEEVPILSQTTSSGGVTTSTEFKSVGIKL 273 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLL 374 PT+++ R+ L + EVS + + AG + P VR+A T +E+ G I +AGLL Sbjct: 274 SVKPTMIAGTRVRLEVNPEVSTVIDYIEAGGVSNPIIAVRQARTELEVNDGQLISMAGLL 333 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + + P+LS+IPILGALF++ R +T++ I +++ Sbjct: 334 QSTERDTERRTPILSQIPILGALFKSDREQSSQTQLIIFLNIKILE 379 >gi|325915066|ref|ZP_08177395.1| type II secretion system protein D [Xanthomonas vesicatoria ATCC 35937] gi|325538764|gb|EGD10431.1| type II secretion system protein D [Xanthomonas vesicatoria ATCC 35937] Length = 680 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 64/294 (21%), Positives = 119/294 (40%), Gaps = 43/294 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSFAA 232 V+ L++ +QV ++ + E+ K++G Q + G + SG S Sbjct: 337 DVIRQLDVH-REQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVP 395 Query: 233 DFGGKFVSEGGDFSVKGVL-------------------------DRFSFETVLHALERAT 267 + G+ VL + F ++ A++ T Sbjct: 396 LAAAASGTRSGNDDDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDT 455 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTV 322 L+ P++ + + A G + T ++ ++ D GV L P + Sbjct: 456 GSNLLSTPSIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQI 515 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + G I L I+ EVS V+A + R+ +T V + +G + L GLL + +Q Sbjct: 516 NTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQT 575 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY 434 E +PLL +P LGALFR+ NR++T + + P +++ A + ++ P +Y Sbjct: 576 VEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYNY 629 >gi|294627095|ref|ZP_06705683.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598528|gb|EFF42677.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 649 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 108/286 (37%), Gaps = 48/286 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224 +++++ ++ DQV ++ I + +G + ITG++ Sbjct: 359 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNT 417 Query: 225 -----------GPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 G S + A+ G S + + F+ + L A Sbjct: 418 SAQRANEIANTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSA 477 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-----ATSVTTHDYGVVLH 317 ++ ++ P + + + G + Y T+S +V + + L Sbjct: 478 MQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGGGAAGSAAQANVQFKEVLLELK 537 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPT+ + R+ L + + E + G +P R+ +T V + G T+V+ G+ Sbjct: 538 VTPTITNDNRVFLNMNVKKDEVARFIILEGYGTVPEINRREVNTAVLVGDGETVVIGGVY 597 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 598 EFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 643 >gi|78049053|ref|YP_365228.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037483|emb|CAJ25228.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 649 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 108/286 (37%), Gaps = 48/286 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224 +++++ ++ DQV ++ I + +G + ITG++ Sbjct: 359 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNT 417 Query: 225 -----------GPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 G S + A+ G S + + F+ + L A Sbjct: 418 SAQRANEIANTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSA 477 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-----ATSVTTHDYGVVLH 317 ++ ++ P + + + G + Y T+S +V + + L Sbjct: 478 MQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGGGAAGSAAQANVQFKEVLLELK 537 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPT+ + R+ L + + E + G +P R+ +T V + G T+V+ G+ Sbjct: 538 VTPTITNDNRVFLNMNVKKDEVARFIILEGYGTVPEINRREVNTAVLVGDGETVVIGGVY 597 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 598 EFTDRESVSKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 643 >gi|91786687|ref|YP_547639.1| type II and III secretion system protein [Polaromonas sp. JS666] gi|91695912|gb|ABE42741.1| type II and III secretion system protein [Polaromonas sp. JS666] Length = 717 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 53/271 (19%), Positives = 105/271 (38%), Gaps = 37/271 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---------------HSITGSSSGP 226 + ++ L+I QV ++ I E K +G + T + Sbjct: 444 QALIAKLDIP-VRQVLIEARIVEASDTFGKSLGVRLGGRPFTLNGNRNAMFGATYIAPDI 502 Query: 227 SKSFAADFGGKFVSEGGDF------------------SVKGVLDRFSFETVLHALERATA 268 + + A G F + GDF S+ + A E Sbjct: 503 TATSGAVRGQNFGTTAGDFVQLPGVGQNGYPASTFAISLFNSSVTRLLNLEISAAEADGK 562 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 + ++ P + A G + Y+ +SS GATS+ + L TP + G I Sbjct: 563 GKIVSSPRIVTADQVKALIEQGTELPYQQATSS-GATSIAFRKANLKLEVTPQITPEGNI 621 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L + +V++ +G + + + T V + +GGT+V+ G+ + + ++ + +PLL Sbjct: 622 ILNV--DVNKDSVGRATANGFAIDTKHIQTQVLVENGGTVVIGGIFEQNDREDETKVPLL 679 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P +G LF+ ++E+ + TP ++ Sbjct: 680 GDLPAIGNLFKTKTRTASKSELLVFITPKML 710 >gi|170698575|ref|ZP_02889644.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] gi|170136509|gb|EDT04768.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] Length = 783 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 86/437 (19%), Positives = 172/437 (39%), Gaps = 44/437 (10%) Query: 22 SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81 ++ P + ++ + D + + + LN+ + V ++++DV + + ++ Sbjct: 158 AILSENPSHKVASSTLQQVDAQSTRATMVLPALNQSLQKPVTLELKDVDI--RSVLSILT 215 Query: 82 HSPRTMYLFGKNVGQANV--ILIGHDGKQMLNLDIL---------IERDIAHL----EMT 126 + ++ K++ ++ + D + L+++ + D L Sbjct: 216 QTSGVSFVLDKDI-SPDLRATVYARDTSVIDALNLILQTSQLERKVLNDTTMLIYPSTEE 274 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV-- 184 ++ D +R ++ + +QD R + ++ ++ V Sbjct: 275 KKKRYDDLVVRSYYLN-----SADPQKVQDMLRTIVAPKSMYVDGRLKMLVVRDTETVQD 329 Query: 185 -----MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGK 237 +NL +IA + V L V + EV L +G Q S++ GP+ + G Sbjct: 330 TIVRLLNLYDIASPE-VILDVEVLEVNSSDLLNLGIQFPDSVSARMVGPAGVAGSMTIGD 388 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 D D VL+ + + + RTLA P + ++ + AS G + T Sbjct: 389 LKHLNRDSFPLSFPDPL---AVLNLRQTSGSTRTLANPRIRVVNHEKASVLIGDKVPVIT 445 Query: 298 VSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMP 349 + + + SV D G+ L P + + +++ EVS V Sbjct: 446 STVNQTSNAITESVNYLDVGLKLEVEPEIHVDNDVTMKVALEVSNIVKEVRSSATGLLAY 505 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R A+T + L G T LAGL+K+D Q+ +P L +IP+LG LF N+R +E Sbjct: 506 QIGTRNANTVLRLHEGETQALAGLIKNDTQESGTHVPGLGRIPVLGRLFSNNRDTATRSE 565 Query: 410 IFIAATPFLVKPVAMRD 426 I + TP + + +AM + Sbjct: 566 IVLLITPHIARSLAMPN 582 >gi|118475530|ref|YP_892173.1| type II and III secretion system protein [Campylobacter fetus subsp. fetus 82-40] gi|118414756|gb|ABK83176.1| type II and III secretion system protein [Campylobacter fetus subsp. fetus 82-40] Length = 512 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 65/278 (23%), Positives = 112/278 (40%), Gaps = 34/278 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------ITGSSSGP-- 226 +N L + QV + V+I V G S +TG+ S Sbjct: 222 DYLNQLENRLKKQVMIDVSIIAVELSNSYTKGIDWSKFELGFNSYLGNDPVTGAPSSIQF 281 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 A + + G F + G ++ S + VL+ LE + ++ P + ++ Q A Sbjct: 282 GTGSAGNPAQSLRNITGGFVLGGGIN-LSMDGVLNFLETKGRTKVVSSPKIMTMNNQQAL 340 Query: 287 FTSGGQHLYKTVSSSTGA------TSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEV 336 T G Y+ +T T+ T Y G++L+ P V GRI LRI + Sbjct: 341 ITVGDNINYRVQEDTTNNNTQTAVTNTTYTQYSIFIGILLNLLPEVSDDGRIMLRINPSL 400 Query: 337 SEPVIGVNAGD-------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 S G + P +K T V++ SG TI+L GL+ + + +P+L Sbjct: 401 SSFKYGDDNRRQANIREIAPDTLQKKLSTVVQVNSGDTIILGGLIGETKGKDNTSVPVLG 460 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 IP+ G LF++++ + TE+ TP ++ + + Sbjct: 461 DIPLFGNLFKSTKDSVSTTELIFIITPKVINNETPKQI 498 >gi|104783254|ref|YP_609752.1| type II secretion system protein D [Pseudomonas entomophila L48] gi|95112241|emb|CAK16968.1| putative type II secretion system protein D [Pseudomonas entomophila L48] Length = 651 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 99/267 (37%), Gaps = 26/267 (9%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + ++ L+I QV ++ IAEV +++G Q G G Sbjct: 339 AAYRSIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 397 Query: 239 VSEGGDFSVKGVLDRFSF--------------------ETVLHALERATAIRTLAEPTLT 278 S G S +++AL+ + L+ PTL Sbjct: 398 ASIAGAASSGDNAKLGKLLSATTGATAGFGHFGGGFNFAMLVNALKGNSGFNLLSTPTLL 457 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + AS G + + T S + ++ + GV L P V + L I Sbjct: 458 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQVNVDNSVRLDIVQ 517 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 EVS A D+ + R+ T V + G ++L GL+ D+ + +PLL IP L Sbjct: 518 EVSSIAESRAASDVIT-NKREIKTKVMVEDNGLVILGGLISDERSTSNQRVPLLGDIPGL 576 Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421 G LFR+ + + + P +++ Sbjct: 577 GRLFRSDASKGTKQNLMVFIRPRILRD 603 >gi|313892802|ref|ZP_07826383.1| bacterial type II and III secretion system protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442733|gb|EFR61144.1| bacterial type II and III secretion system protein [Veillonella sp. oral taxon 158 str. F0412] Length = 429 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 16/249 (6%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAA 232 N ++V NL+ QV L+ TI + + K+ GF+ S TG + S+ A Sbjct: 190 NGEKRRVENLVRAIDKEPKQVQLEATIIAMEQSYAKEQGFRWSWLSLTGHGDDKTNSYGA 249 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 GK S G +F + L +E + +A+P++ A++G++A G + Sbjct: 250 VTFGKTPS--------GEAYKFFVKPELSLMESSGKAVLIAKPSIMALNGETAHILIGER 301 Query: 293 HLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 S G S + G+ L++TP + + G + +I EVS P++ V+ Sbjct: 302 IPVVEESEVNGERKRSTRYEEVGIKLNYTPIITADGGVDAKIHAEVSTPIM-VSEMKAYK 360 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+A T V L G +V+ GL+ + Q + +P+L IP+LG LFR+SR ++ E+ Sbjct: 361 ISTRQAHTRVRLQQGEVLVIGGLMDNRDQHQIQKVPILGDIPLLGKLFRHSRKTKDSIEM 420 Query: 411 FIAATPFLV 419 + +V Sbjct: 421 LVLVRATVV 429 >gi|253701597|ref|YP_003022786.1| type II and III secretion system protein [Geobacter sp. M21] gi|251776447|gb|ACT19028.1| type II and III secretion system protein [Geobacter sp. M21] Length = 870 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 68/348 (19%), Positives = 137/348 (39%), Gaps = 45/348 (12%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 VRT+ ++ E ++K++ ++ + V L+V + E+ + Sbjct: 286 VRTMLQVKKIYVNEEANALVLRDKPEVIEVARKILEANDVPDAE-VLLEVEVFELSKQNA 344 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------------------GDFS 246 + G S +S G + + G F+++ F+ Sbjct: 345 ETFGLLLSRYATSMGVTGPGSTSGGSPFLADTLGAVTTTTTGTGTATTSAQPSNLLNVFN 404 Query: 247 VKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-- 303 ++G + + + + TL+ P + + + A F G + T SS +G Sbjct: 405 LRGYNGYLTVPNATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRVPITTTSSPSGGG 464 Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKAD 357 + +V D GV ++ PT+ + +++ EVS + A + + R D Sbjct: 465 VSVNVQYVDVGVKVNAEPTIQLNNEVAIKLGLEVSSILNEKTIGTDQATTVVTIGTRNLD 524 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + L G T ++ GL++ K + LL IPI+G LF N+ +++TE+ +A TP Sbjct: 525 TVLSLKDGETSIIGGLIQKTQTDSKNKVFLLGDIPIIGPLFSNTSDKKDKTELLLAITPR 584 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 +V+ V + D +D AF+ R ++ + S ++ Sbjct: 585 IVRGVTVPD-----------NDVAAFWSGREDEPSSHQPYSSFMEPDF 621 >gi|312879791|ref|ZP_07739591.1| general secretion pathway protein D [Aminomonas paucivorans DSM 12260] gi|310783082|gb|EFQ23480.1| general secretion pathway protein D [Aminomonas paucivorans DSM 12260] Length = 648 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 126/304 (41%), Gaps = 32/304 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GG 236 ++ ++V+ L+I QV L+ +AEV L Q G + G FA G Sbjct: 340 AAIERVLEQLDI-QPKQVLLRGLVAEVNLTKLDQAGVDWAAWGGGLTGDGVFAGQVQMGN 398 Query: 237 KFVSE--------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 + G + + + L R AI L+ P Sbjct: 399 SSIPPMFLEWFRDLTKHDTVTYDRFGNAITTTVYDSKALVYGYVKLLNRFDAINVLSMPR 458 Query: 277 LTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + +S G + + S +S D G++L TP + S + L Sbjct: 459 IMCTDNLESSLQVGQVIPQLKGKLSEVNNPSAVQSSYEYKDTGLILKVTPHIRSGNLVAL 518 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 I+ + E V+ + D P+ R+ T V + +G TI+L G++K+ + +K +P LS Sbjct: 519 EIEQRIEE-VLTASTVDTPTTTKREIKTNVLVENGQTIILGGIIKEAEKSMKSRVPGLSY 577 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS-RPDDHYSVEDDAKAFFFNRV 448 IP+LG LF ++ RE+ ++ I TP++++ P D+S + V A+A R+ Sbjct: 578 IPLLGNLFTSTVKQREKVDLMIFLTPYILENPRQAVDVSVQISSGDQVPSAAEAETTLRL 637 Query: 449 NKIY 452 +K++ Sbjct: 638 DKLF 641 >gi|254428336|ref|ZP_05042043.1| type IV pilus secretin PilQ subfamily, putative [Alcanivorax sp. DG881] gi|196194505|gb|EDX89464.1| type IV pilus secretin PilQ subfamily, putative [Alcanivorax sp. DG881] Length = 693 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 60/304 (19%), Positives = 107/304 (35%), Gaps = 61/304 (20%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------- 226 Q +++++ L++ QV ++ + D+ + G + G ++ Sbjct: 392 TQAKLEEIRELIDQLDVP-VQQVLIEARVVVATNDVTDEFGVRWGGLGFNAESMLQDQRT 450 Query: 227 -------------------SKSFAA---------DFG-------------------GKFV 239 +FAA DFG G Sbjct: 451 YGVSGRLQSLRNLHQTNIDGAAFAASPAIDPDDVDFGPDDYLFEDIENDDDLIVDLGVDS 510 Query: 240 SEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + F+V L E L ALE +A P + Q A SG Q ++ Sbjct: 511 ANASRFAVGFTSLASGLIELELSALEAEGHGELVATPKVLTADQQPAVIASGQQVPFEVA 570 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 +SS GATS+ + + L TP + G I + ++ ++ + + +T Sbjct: 571 TSS-GATSIDFVEAELRLEVTPHITPDGNIIMTLKVNND----SFSSDGSAAINTNRVET 625 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +V + G T+VL G+ + + P L +P +G LFR + + E+ I TP L Sbjct: 626 SVLVNDGETVVLGGIFQQEKINSVTKTPFLGDLPWIGNLFRKTVNRDNKQELLIFITPRL 685 Query: 419 VKPV 422 +K Sbjct: 686 MKDA 689 >gi|115351491|ref|YP_773330.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] gi|115281479|gb|ABI86996.1| type II and III secretion system protein [Burkholderia ambifaria AMMD] Length = 812 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 124/312 (39%), Gaps = 30/312 (9%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 D + LR+ I ++ V+ + VV+ TIQ ++R V Sbjct: 273 ADAKSVMAALRQMIKPKDVYVDERVNAVVMRDTPETIQVAERVVMG-------------- 318 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 L+I + +VTL V + EV + +G Q+ + Sbjct: 319 ----------LDIP-QSEVTLDVQVLEVNMNDSLDLGVQYPGKIQFNALGGVEGGALTLG 367 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + V + + L++ +TLA P + + + A+ G + T Sbjct: 368 DLLRLNRDRVGVSSESGGLALAIDLLQKQGKTKTLANPKIRVRNMEKANIKIGERVPIVT 427 Query: 298 VSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352 +++ G + V+ D G++L P + + +++ EVS + S Sbjct: 428 TTNANGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILTKETTKTGLVAYSLG 487 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A+T + +G T +LAGL+K + G+P +S +P+LG LF ++ + E +EI + Sbjct: 488 TRNAETLMTAKNGETQILAGLVKRNESDSVAGLPGVSGLPVLGRLFGSNGRSNERSEIVL 547 Query: 413 AATPFLVKPVAM 424 TP + + + + Sbjct: 548 LITPHIERNLDL 559 >gi|312143742|ref|YP_003995188.1| type II and III secretion system protein [Halanaerobium sp. 'sapolanicus'] gi|311904393|gb|ADQ14834.1| type II and III secretion system protein [Halanaerobium sp. 'sapolanicus'] Length = 431 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + QV +K I E+ R+ +K++G SF D G Sbjct: 171 RPQKQVLIKARIEEISRNKVKELGIN-----PDQLSELSFIKDDSGSIEKI--------- 216 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVT 308 R ++ L LE A LA P+L + Q A G Q K V +S++ Sbjct: 217 --RVNWPDTLKILEEEGASNILANPSLMTLDRQKAKLVIGDQIPVKLERVEGDNIVSSLS 274 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 + G+VL F P +++ +I L I+ V+ + V + +P+ R A+TTV L + + Sbjct: 275 YIEAGIVLEFLPKIINDNQILLEIKPSVNS-IGQVVSDGLPAVNSRSAETTVILENEQVL 333 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + GL+K+D + IP S++P+ G LF++ + +E+ I +P ++ Sbjct: 334 AIGGLIKEDEIKSLSKIPFFSELPLFGNLFKSEKSTVMNSELMIFISPEII 384 >gi|284097759|ref|ZP_06385757.1| Type II secretory pathway, component PulD [Candidatus Poribacteria sp. WGA-A3] gi|283830734|gb|EFC34846.1| Type II secretory pathway, component PulD [Candidatus Poribacteria sp. WGA-A3] Length = 406 Score = 166 bits (421), Expect = 7e-39, Method: Composition-based stats. Identities = 56/289 (19%), Positives = 111/289 (38%), Gaps = 35/289 (12%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L G ++ +R E++ + V N L QV ++ I E+ Sbjct: 136 LSGTIQVTDLHRRVEEVATFLV--------------NVRNSL----YRQVEIQARIYEIA 177 Query: 207 RDILKQIGFQHSI----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 +G S T S + G F+S + + FE V+ A Sbjct: 178 LRDEYSLGVDWSRIALRTPKGSFKLANIITAPAGGFLSRAATAAFS--FNDGDFEGVIQA 235 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGV 314 L+ ++ +++P + ++ Q A G + T +++ G V T G+ Sbjct: 236 LQEQGDVQVVSQPRILTLNNQPALIKVGTDQSFFTSTTTQGTAGAGNIVTEQVRTVTSGL 295 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLA 371 VL TP + G I + + ++ V N P V+++ V + G +++ Sbjct: 296 VLSVTPQISRDGWIMMDVSPIITRLTDTVESRNGSTAPVLEVKQSGGLVRIRDGQLVMIG 355 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GL+++ + + +P L +P+LG+ F + TE+ I P +++ Sbjct: 356 GLIQEQLTNTERAVPFLGDLPVLGSFFSGTYQAERNTELVIFLMPRILR 404 >gi|329848228|ref|ZP_08263256.1| general secretion pathway protein D [Asticcacaulis biprosthecum C19] gi|328843291|gb|EGF92860.1| general secretion pathway protein D [Asticcacaulis biprosthecum C19] Length = 617 Score = 166 bits (421), Expect = 7e-39, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 119/320 (37%), Gaps = 14/320 (4%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS---GRNQYANSSSKKVMNLLNIAGE 193 + G + + + V + + + + ++V++ ++ Sbjct: 294 SATSTGEAAAPAGTSSAPESNSQGVRIVADKATNTVIINAPEATRVRLQEVLSEID-REP 352 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV ++ +I EV G S+ S S + F FS+ + + Sbjct: 353 AQVFIEASIVEVTLTKDLSYGVDWEAIASNGDLSVSHFSTRSTGFGQIAPGFSINYLGN- 411 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------S 306 + AL + +R ++ P + + A G Q T ++ + S Sbjct: 412 -DISAAVTALSSQSKVRIVSAPKVATVENMPAVLQVGDQVPVVTQTAQSVVNGDAPVVNS 470 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSG 365 V D GV+L TP + RI L + EVS +G D P+ RK D+++ +P G Sbjct: 471 VDYRDTGVMLKVTPRITGTNRILLEVSQEVSSVARTQTSGIDSPTINQRKLDSSLIVPEG 530 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + L GL+ Q GIP L IP++G +F+ NR TE+ + +++ + Sbjct: 531 TVVALGGLISSSDSQSDSGIPGLKDIPLIGGVFKGQSHNRNRTELIVLLKARILRSPSDY 590 Query: 426 DLSRPDDHYSVEDDAKAFFF 445 D + + + F Sbjct: 591 DAMTASLGADLRELIQEGFL 610 >gi|291286288|ref|YP_003503104.1| type II and III secretion system protein [Denitrovibrio acetiphilus DSM 12809] gi|290883448|gb|ADD67148.1| type II and III secretion system protein [Denitrovibrio acetiphilus DSM 12809] Length = 509 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 58/262 (22%), Positives = 102/262 (38%), Gaps = 23/262 (8%) Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 + +S + V+ LN QV ++ + EV + G T S D Sbjct: 252 KIVSSYMEDVIRELN----KQVLIEAKLVEVTLNDTSAYGINWRGTADGKSIGLSLGTDG 307 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G + G + G + F + + + ++ P + ++GQSA TSG Sbjct: 308 GAAVLP--GGLTAVGAISSFDYSDWFAFMAAYGRVESVGNPRIRVMNGQSAMITSGQLKP 365 Query: 295 YKTVSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIGLRI---------QTEVS 337 + + T + G++L TP V G I L I E Sbjct: 366 FWEMERETDDDTDDVTVTYTRVTVLDGIMLGVTPHVKEDGTITLNIVPVFSDVEETPEQQ 425 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 GV P+ +++A T + L SG T+V+ GL+ + + + +PLL +P LG L Sbjct: 426 LDENGVVVASYPNINLKEAGTVLNLESGSTVVMGGLISNVETEDETKVPLLGDVPFLGYL 485 Query: 398 FRNSRFNREETEIFIAATPFLV 419 F++ ++ E+ I T ++ Sbjct: 486 FKSKYKYTQKRELVIFLTATII 507 >gi|269214941|ref|ZP_06158925.1| type IV pilus secretin PilQ [Neisseria lactamica ATCC 23970] gi|269208722|gb|EEZ75177.1| type IV pilus secretin PilQ [Neisseria lactamica ATCC 23970] Length = 254 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 22/246 (8%) Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------------ 244 ++ I E + +G + TG A +G EGGD Sbjct: 1 MIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFEGGDGKWSAQTSINLP 60 Query: 245 -------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK- 296 S+ + + L A E + +TLA P + + + A SG + Y+ Sbjct: 61 VAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGTEIPYQD 120 Query: 297 -TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVR 354 + S S+ +T+ T + L TP + G+I + ++ PV V + + Sbjct: 121 TSSSGSSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPVDCTVKDETTKCIQTK 180 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +T + +GGT+++ G+ +++ +PLL IP++G LF+ + E+ I Sbjct: 181 NLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFKTRGKSTNRRELLIFI 240 Query: 415 TPFLVK 420 TP ++ Sbjct: 241 TPRIMD 246 >gi|315637872|ref|ZP_07893062.1| general secretory pathway protein D [Campylobacter upsaliensis JV21] gi|315482113|gb|EFU72727.1| general secretory pathway protein D [Campylobacter upsaliensis JV21] Length = 468 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 103/269 (38%), Gaps = 17/269 (6%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + + L + QV + V+I V + G + + + S Sbjct: 198 EYITKLENRLKKQVIIDVSIIAVNLNENHSSGINWQNFNLDFASTTQNGQNSFIQLQSGQ 257 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G G+ +F +VL+ L + + L+ P L A++ Q A + G Y+ SS Sbjct: 258 GFVKNLGLRANINFNSVLNFLSQNGKTQVLSSPKLMALNNQQAIISVGDTINYQVKESSK 317 Query: 303 GATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------ 347 G + TT G++L P + +I LRI +S+ + Sbjct: 318 GTENGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPRT 377 Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P +K T V + + T++L GL+ + + + LSKIP+LG LF + Sbjct: 378 IAPDTIQKKLSTVVSMENNQTLILGGLISHNQIKEASEVNFLSKIPLLGLLFSGDETSSN 437 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 TEI TP +V M LS D + Sbjct: 438 STEIVFIITPSIV-DKQMGILSLKDLGFR 465 >gi|121999034|ref|YP_001003821.1| type II and III secretion system protein [Halorhodospira halophila SL1] gi|121590439|gb|ABM63019.1| type II and III secretion system protein [Halorhodospira halophila SL1] Length = 372 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 62/307 (20%), Positives = 129/307 (42%), Gaps = 20/307 (6%) Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 R + + +++ + V + E + T + Q + + ++++ L Sbjct: 44 RTLPLVHAEAAQLAELLRDETGVLSESGHASVDERTNTLILQDTPARLEEA--EQLVREL 101 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----------- 237 + A QV ++ I + +++G + ++ +F + G Sbjct: 102 DRAN-RQVMIEARIVLASGEYSRELGSRLGLSSERGDGHFAFDSLPGSNDAAVGDGLLAE 160 Query: 238 --FVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 V EG SV G + + L A+E R ++ P + Q+A G Q Sbjct: 161 LPPVGEGARLSVSVGEVGERLLQLELSAMEAEGHGRVVSSPRVLTTERQAARIEQGVQIP 220 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 Y+ ++ +GAT+V D + L TP V + L ++ V++ +G +PS + Sbjct: 221 YQE-TAESGATAVAFQDAALSLTATPQVTEDDAVSLALR--VTKDAVGQIYEGVPSIDTQ 277 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T + + +G TIVL G+ + + ++ ++ +P L ++P++G LFR + E+ + Sbjct: 278 AVTTHLRVQAGETIVLGGVREHEQRKQRQRVPWLGELPLIGWLFRQRMSEQSHHELLVFV 337 Query: 415 TPFLVKP 421 TP LV+ Sbjct: 338 TPRLVED 344 >gi|162146314|ref|YP_001600773.1| general secretion pathway protein D [Gluconacetobacter diazotrophicus PAl 5] gi|209543683|ref|YP_002275912.1| general secretion pathway protein D [Gluconacetobacter diazotrophicus PAl 5] gi|161784889|emb|CAP54432.1| putative general secretion pathway protein D [Gluconacetobacter diazotrophicus PAl 5] gi|209531360|gb|ACI51297.1| general secretion pathway protein D [Gluconacetobacter diazotrophicus PAl 5] Length = 772 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 119/325 (36%), Gaps = 17/325 (5%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDI 209 + + +A+ + + + S V +L QV + IAEV+ + Sbjct: 438 ASAEGRPQAMRIISNSQHNAILVYGTDQESDTVEQMLRRIDVMPLQVRIDAVIAEVQLND 497 Query: 210 LKQIGFQH-----SITGSSSGPSKSFAAD-FGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 Q G Q I G S S++ S + G + AL Sbjct: 498 ALQYGTQFFFKSGGINGVLSTNSQTITTGTLATAAFSHTLPGFIIGGASGGGAPFAIDAL 557 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHF 318 + T + L+ P L ++A G + S S+ T GV++ Sbjct: 558 QNVTTVHVLSSPQLMVQDNRAARLQVGQLVPVQIGSQSSTIGTSIYNQFTYQPTGVIMQV 617 Query: 319 TPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TP V G + L + EVS NA P++ R + V + G T+ LAGL+ Sbjct: 618 TPHVSEGGLVTLDVSQEVSSVSPTAASTANAASNPTFNDRSVSSRVVVQDGQTVGLAGLI 677 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 D ++ GIP L IP+LG L N NR+ TE+ I TP ++ D Sbjct: 678 TDSSSRINSGIPWLKNIPVLGVLAGNQNNNRQRTELLILMTPHVIHDQRDAVDLMEDLRD 737 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASE 459 + + A RV ++ G + + Sbjct: 738 THPNAANVPDELRVMRMTGSADPQQ 762 >gi|325922191|ref|ZP_08183978.1| type II secretory pathway protein D [Xanthomonas gardneri ATCC 19865] gi|325547310|gb|EGD18377.1| type II secretory pathway protein D [Xanthomonas gardneri ATCC 19865] Length = 674 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 126/326 (38%), Gaps = 47/326 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSFAA 232 V+ L++ +QV ++ + E+ K++G Q + G + SG S Sbjct: 324 DVIRQLDVH-REQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVP 382 Query: 233 DFGGKFVSEGGDFSVKGVL-------------------------DRFSFETVLHALERAT 267 + + VL + F ++ A++ T Sbjct: 383 LAAAAAGTRSNNGEEDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDT 442 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTV 322 L+ P++ + + A G + T A ++ D GV L P + Sbjct: 443 GSNLLSTPSIMTLDNEQARILVGQEVPITTGEVLGTANVNPFRTIQRQDVGVQLEVRPQI 502 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + G I L I+ EVS V+A + R+ +T V + +G + L GLL + +Q Sbjct: 503 NTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQT 562 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY----SV 436 E +PLL +P LGALFR+ NR++T + + P +++ A + ++ P +Y + Sbjct: 563 VEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYNYLRDRQL 622 Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEG 462 D + + + Y + ++ Sbjct: 623 ADGDPEAALDALVRDYLRAQPPQLPA 648 >gi|332994893|gb|AEF04948.1| pilus (MSHA type) biogenesis protein MshL [Alteromonas sp. SN2] Length = 557 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 23/250 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKG 249 QV L+ I EV + Q G + +++G S S A G +S Sbjct: 285 TKQVILEARILEVELNDGYQQGINWNEILANTGNTDFSLSTTAGTLGNDISATLGGVTSL 344 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------- 301 F VL L ++ L+ P +TAI+ Q A G + T SS Sbjct: 345 AFLNKDFSGVLSLLSTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSDSTVTSTT 404 Query: 302 ---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MP 349 + +T G+ L TP + G + L + V E + Sbjct: 405 TSISPDIELTPFFSGIALDVTPQIDDKGTVLLHVHPSVIETAEQQKVVTMDDEQIVLPLA 464 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +R++DT + SG +V+ GL++ + PLL IP+ G LF+N + + + E Sbjct: 465 QSTIRESDTIIRAGSGEIVVIGGLMQTSQTDVVSKTPLLGDIPLFGELFKNRQVSETKKE 524 Query: 410 IFIAATPFLV 419 + I P +V Sbjct: 525 LIILLKPTVV 534 >gi|120553686|ref|YP_958037.1| pilus (MSHA type) biogenesis protein MshL [Marinobacter aquaeolei VT8] gi|120323535|gb|ABM17850.1| pilus (MSHA type) biogenesis protein MshL [Marinobacter aquaeolei VT8] Length = 572 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 108/263 (41%), Gaps = 28/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG----K 237 + + + + QV L+ I EV + Q G + SS+G + F + G + Sbjct: 273 ENYLRKTELIMQRQVVLEAKILEVGLNEGYQQGIDWNDVQSSAGRADYFTSQSLGGQQIR 332 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 GG FS + F ++ L + ++ L+ P ++ ++ Q A G + T Sbjct: 333 TPDIGGLFSAT--VSAGDFTGLIELLGQQGNVQILSSPRISTVNNQKAVIKVGTDEFFVT 390 Query: 298 -------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----- 339 S++ + +T G+ L TP + G I L + VSE Sbjct: 391 DIDFDDNNSAVTATDSTSTSVELTPFFSGISLDVTPQIAEDGAITLHVHPSVSEVADQEK 450 Query: 340 --VIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 IG +P VR+ D+ + SG +V+ GL+++ + +P S+IP+LG Sbjct: 451 VITIGERDVTLPLARSTVRETDSVIRAESGQIVVIGGLIQNSSEDNNSAVPFFSEIPLLG 510 Query: 396 ALFRNSRFNREETEIFIAATPFL 418 LF+ F ++E+ I P + Sbjct: 511 ELFKQRNFESRKSELVILLRPVV 533 >gi|315500691|ref|YP_004089492.1| type II and III secretion system protein [Asticcacaulis excentricus CB 48] gi|315418703|gb|ADU15341.1| type II and III secretion system protein [Asticcacaulis excentricus CB 48] Length = 626 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 69/294 (23%), Positives = 120/294 (40%), Gaps = 13/294 (4%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + R V ET + + V+N ++ QVT++ +I EV + Sbjct: 328 NTDSNIRIVADKETNTVIVSAPEAERVRIQSVLNEVD-REPAQVTIEASIVEVTLNNEFS 386 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 G + S S + FSV + R + L+AL + +R + Sbjct: 387 FGVDWQTI--NGALSLSNYTTDSTSLAPQAPGFSVNYL--RSDIKAALNALSSKSKVRIV 442 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSP 325 + P +TA +AS G Q +S + +++ D GV L TP VL+ Sbjct: 443 SAPKMTARENATASLQIGDQVPIVKQNSQSTNGGNAPIVSTIDYRDTGVTLKVTPRVLND 502 Query: 326 GRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 R+ + + EVS +G D P+ + RK ++++ +P G + L GL+ + G Sbjct: 503 NRVAMDVTQEVSSVARTQTSGIDSPTIKQRKLESSLIIPEGTVVALGGLISSSESDSEGG 562 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 PLL IP LG LF+ N++ TE+ + +++ A + D + D Sbjct: 563 APLLKDIPGLGNLFKQRARNKDRTELIVLIQVTILRDPAAFNRQWEDFGADIRD 616 >gi|166713254|ref|ZP_02244461.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 648 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 111/286 (38%), Gaps = 48/286 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------------- 222 +++++ ++ DQV ++ I + +G + I G+ Sbjct: 358 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYQNT 416 Query: 223 ---------SSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261 + G S + A GG + G + + F+ + L Sbjct: 417 SAQRASEIANGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELS 476 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLH 317 A+++ ++ P + + + G + Y T+S S +V + + L Sbjct: 477 AMQQEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELK 536 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPT+ + R+ L + + E ++ G +P R+ +T V + G T+V+ G+ Sbjct: 537 VTPTITNDNRVFLSMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVY 596 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 597 EFTDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642 >gi|317052313|ref|YP_004113429.1| type II and III secretion system protein [Desulfurispirillum indicum S5] gi|316947397|gb|ADU66873.1| type II and III secretion system protein [Desulfurispirillum indicum S5] Length = 683 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 23/286 (8%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 N A + ++++ + QV + V I ++ +G +S SG A + Sbjct: 208 NASAMRRIEAYLDMVRRLYDQQVEISVRILQISLSDSLTMGVDYSALFRVSGSDTPIAFN 267 Query: 234 FGGKFVSEGGDFS-----------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G G GVL+ F L L + TL+ PT+T ++ Sbjct: 268 LHGTEGQAGASLDGTAGERGVLDYTVGVLNPGKFAGFLQFLSLHGTVHTLSNPTITTLNN 327 Query: 283 QSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + + S + Y+ ++ + A T GV L TP +++ G I L + V Sbjct: 328 VTGNVYSIRTYPYQVTTTESSANVREARTYFEDVKIGVSLTVTPNIVNNGDILLEVLPVV 387 Query: 337 SEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 E + P + T + + + + GL+ + + GIP+LS+I Sbjct: 388 GEIYEENFNPASGEREKPQTVEQAIRTILRTRNNHSYFIGGLIYEKNVESTSGIPVLSRI 447 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 P+LG LFR+ R + E+ I TP ++ P + P D++S Sbjct: 448 PVLGRLFRSDRRVQSRQELVIVLTPKII-PSLDSHSAGPVDYHSTP 492 >gi|171463462|ref|YP_001797575.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193000|gb|ACB43961.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 509 Score = 166 bits (420), Expect = 9e-39, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 101/251 (40%), Gaps = 18/251 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE- 241 K+++ L+I +V ++ I E D ++G + ++ + + G V + Sbjct: 262 KLISKLDIRT-QEVLIEAFIVEADDDWQYELGSRFGYRNTTGNGTSTNPTSAVGGAVGDL 320 Query: 242 -----------GGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G F + + + L A+E+ + ++ ++ P + + + A Sbjct: 321 ANANIFSRPVTGAPFGLGYLFQTTASQLKVELTAMEKLSLVKIISNPHVFTMDNEEAVVI 380 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 G Q Y T + D + L TP+++ G + L + P + Sbjct: 381 DGVQIPYPVPGVGTNQITYEFKDAALKLTATPSIVGDGNLFLNMIVNKDSPNYSTSP--- 437 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 PS R+ + + + G V+ G+ + E +PLL IP+LG+LF +R ++T Sbjct: 438 PSINKREVRSKLLIQDGTIAVIGGIYDQTKENTVEKVPLLGSIPLLGSLFSYTRKADKKT 497 Query: 409 EIFIAATPFLV 419 ++ + P ++ Sbjct: 498 QLLVFIAPKIL 508 >gi|188990167|ref|YP_001902177.1| exported type II protein secretion system protein D [Xanthomonas campestris pv. campestris str. B100] gi|167731927|emb|CAP50113.1| exported type II protein secretion system protein D [Xanthomonas campestris pv. campestris] Length = 690 Score = 166 bits (420), Expect = 9e-39, Method: Composition-based stats. Identities = 65/294 (22%), Positives = 119/294 (40%), Gaps = 43/294 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKS 229 V+ L++ +QV ++ + E+ K++G Q + G + Sbjct: 346 DVIRQLDVH-REQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLLATQYSGAAPGIVP 404 Query: 230 FAADFGGKFVSEGGDFSV----------------------KGVLDRFSFETVLHALERAT 267 AA G + G D SV G + F ++ A++ T Sbjct: 405 LAAAAAGTRSNNGEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDT 464 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTV 322 L+ P++ + + A G + T ++ ++ D GV L P + Sbjct: 465 GSNLLSTPSIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQI 524 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + G I L I+ EVS V+ + R+ +T V + +G + L GLL + +Q Sbjct: 525 NTAGGITLAIKQEVSAIAGPVSTQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQT 584 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY 434 E +PLL +P LGALFR+ NR++T + + P +++ A + ++ P +Y Sbjct: 585 VEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYNY 638 >gi|149923951|ref|ZP_01912337.1| type IV pilus secretin PilQ [Plesiocystis pacifica SIR-1] gi|149815183|gb|EDM74732.1| type IV pilus secretin PilQ [Plesiocystis pacifica SIR-1] Length = 1125 Score = 166 bits (420), Expect = 9e-39, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 98/267 (36%), Gaps = 42/267 (15%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI-------TGSSSG-------------------- 225 QV ++ I E R + L+Q+G Q TG+ +G Sbjct: 853 TPQVLIEARIVEARTNWLRQLGIQWGFDFVASPGTGNPTGLLFPNAIGIGGGSGSNQSPV 912 Query: 226 ---------PSKSFAADFGGKFVSEGGD---FSVKGVLDRFSFETVLHALERATAIRTLA 273 + ++A D + G FS + + L A E +R ++ Sbjct: 913 NGLILPGAAANPNYAVDLPAVVGTGSGGALGFSFGSLSGNLNTNLRLSAAENEGDVRIIS 972 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 P + + A G Q VS+ + + + L TP V + G + L ++ Sbjct: 973 APKIVTLDNTEAQIEQGVQIPIAQVSAQ--GVNTRYVNATLGLRVTPQVTNEGAVLLEVE 1030 Query: 334 TEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + +E + A P+ + A + + + G T V+ G+ + +P + IP Sbjct: 1031 VQKNEADFVNTGARGDPTILTKSARSQLLITDGDTAVIGGIYTRNQAINHSKVPWFADIP 1090 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 I+G F+N + +E+ I TP +V Sbjct: 1091 IIGWFFKNRTERDDRSEMLIFLTPRIV 1117 >gi|21232854|ref|NP_638771.1| type II secretion system protein D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767075|ref|YP_241837.1| type II secretion system protein D [Xanthomonas campestris pv. campestris str. 8004] gi|21114682|gb|AAM42695.1| type II secretion system protein D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572407|gb|AAY47817.1| type II secretion system protein D [Xanthomonas campestris pv. campestris str. 8004] Length = 690 Score = 166 bits (420), Expect = 9e-39, Method: Composition-based stats. Identities = 65/294 (22%), Positives = 119/294 (40%), Gaps = 43/294 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKS 229 V+ L++ +QV ++ + E+ K++G Q + G + Sbjct: 346 DVIRQLDVH-REQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLLATQYSGAAPGIVP 404 Query: 230 FAADFGGKFVSEGGDFSV----------------------KGVLDRFSFETVLHALERAT 267 AA G + G D SV G + F ++ A++ T Sbjct: 405 LAAAAAGTRSNNGEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDT 464 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTV 322 L+ P++ + + A G + T ++ ++ D GV L P + Sbjct: 465 GSNLLSTPSIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQI 524 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + G I L I+ EVS V+ + R+ +T V + +G + L GLL + +Q Sbjct: 525 NTAGGITLAIKQEVSAIAGPVSTQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQT 584 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHY 434 E +PLL +P LGALFR+ NR++T + + P +++ A + ++ P +Y Sbjct: 585 VEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYNY 638 >gi|87200666|ref|YP_497923.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87136347|gb|ABD27089.1| type II and III secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 748 Score = 165 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 64/315 (20%), Positives = 122/315 (38%), Gaps = 55/315 (17%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFAADFG 235 +++ L++ ++QV ++ I E+ D+ K++G Q G ++ S D Sbjct: 377 ELIRQLDLP-QEQVLVEAIIVEISNDVAKELGVQMLFGGKNMPFAVTNYSNSSPNIIDIA 435 Query: 236 GKFVSEGGD-------------------------------FSVKGVLDRFS--------F 256 G +++ + S +G F Sbjct: 436 GGLLADNLNQTTTVVNGDTVTTTTNSTAGDLLRENAASKLLSARGAYTGFLTELSKDTYL 495 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTH 310 +++A++ L+ P +T + AS G + T + +G ++ Sbjct: 496 GAIINAVQTDKNSNILSTPHITTNNNVPASILFGQEIPVSTGEALSGGNFSDTFRTIQRQ 555 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIV 369 + G+ L TP + + I L ++ EVS V+ R+ TTV + + Sbjct: 556 NVGIELDVTPQINASNMIRLDLRQEVSSIAGTVSKTSNELIVNKREIKTTVTVGDREIVA 615 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 L GLL D+ Q+ + +PLL IPILG F++ +R +T + + P +++ A R + Sbjct: 616 LGGLLDDNEQRTLQKVPLLGDIPILGEAFKSRARSRVKTNLMVFIRPTILRNAADRQ-AL 674 Query: 430 PDDHYSVEDDAKAFF 444 Y V DA+ F Sbjct: 675 AARRYGVVRDAQVKF 689 >gi|317487416|ref|ZP_07946204.1| type IV pilus secretin PilQ [Bilophila wadsworthia 3_1_6] gi|316921348|gb|EFV42646.1| type IV pilus secretin PilQ [Bilophila wadsworthia 3_1_6] Length = 541 Score = 165 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 69/363 (19%), Positives = 135/363 (37%), Gaps = 70/363 (19%) Query: 101 LIGHDGKQMLNLDILIE-RDIAHLEMTLRRFI--------ADSNIRVEMVSDTVVLHGMV 151 LI + + + + A L+ +L +F+ + I V+ S+ +++ Sbjct: 170 LISRQNSPLTVSVVSVRYAEAAALQQSLTKFLTAANGQGGQAAVIEVDEHSNALIIQ--- 226 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 T QD QR + L ++ L+ QV LK I E ++ + Sbjct: 227 ATEQDQQRIIRL---------------------VDNLDRPRP-QVHLKAYIVEATKETAR 264 Query: 212 QIGFQHSITGSSSGPSKS----------------------------------FAADFGGK 237 ++G Q S + F D+ G Sbjct: 265 ELGVQWGGVWRSGSFNNGNHAWIGSGASGTQGQDPVTGGLTGTHGSGLGGAPFGLDYSGI 324 Query: 238 FVSEGGDFS-VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 ++ G + G + E L+ +E+ I L+ P++T + + A +G + Y Sbjct: 325 ASNDMGSLGFLFGKVGGSMLEVQLNLMEKDGNINILSSPSITTLDNKMAYTENGEKVPY- 383 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 +S+ G V D + L TP V+ + L++ + E + P ++ Sbjct: 384 VSTSNMGDREVKFEDAVLRLEMTPNVIDGDNLKLKVLVKKDEVDTSRSVDGNPFIIKKQT 443 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +TT+ + +G T+V++GL K+ + G+P L IP +F + + E+ I TP Sbjct: 444 ETTLIMRNGETVVISGLTKEKGTDINAGVPGLKDIPGGKYVFGHESKGKTMEEVLIFITP 503 Query: 417 FLV 419 ++ Sbjct: 504 EIL 506 >gi|51243965|ref|YP_063849.1| type II protein secretion protein [Desulfotalea psychrophila LSv54] gi|50875002|emb|CAG34842.1| related to type II protein secretion protein [Desulfotalea psychrophila LSv54] Length = 559 Score = 165 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 57/304 (18%), Positives = 108/304 (35%), Gaps = 36/304 (11%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI-------AGEDQVTLKVTIAE 204 ++ ++R ++ S+ + V++ L+ Q+ + I E Sbjct: 256 QSPTATRRYAAGGAMYIIDKPIGLITVSAPRNVLDRLDAYFFSLKKELYKQIAIDAKIIE 315 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGVLDRFSFETVLH 261 V IG S G ++G + G F L+ F ++ Sbjct: 316 VTLSDASSIGIDWSNVLGGDGFKLGGKVNYGDATDAIFHNGSGFLDTITLESTDFHVLIK 375 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------------VTT 309 AL + L+ P L+ ++GQ A + G Y + + TS + Sbjct: 376 ALNEQGDTKVLSNPKLSVMNGQPALISVGRSITYISEIEADRDTSSIGTSTITYTTETDS 435 Query: 310 HDYGVVLHFTPTVLSPGRIGLRI--------------QTEVSEPVIGVNAGDMPSYRVRK 355 G+ L T TVL I + + + E + + +P VR+ Sbjct: 436 LLSGLGLGITATVLDDSEIIMNLVPVTSELVPFKDGEEIEYRQVGDDGASVGLPVLNVRE 495 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 TTV + G T+++ GL+ + +P+L IP L LF ++++ E+ I Sbjct: 496 MSTTVRVKDGETLIIGGLISESNSTTGSSVPILGSIPGLKYLFGYEGKSKQKKELVILIQ 555 Query: 416 PFLV 419 P ++ Sbjct: 556 PRII 559 >gi|86149355|ref|ZP_01067586.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596641|ref|ZP_01099878.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 84-25] gi|218563075|ref|YP_002344854.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840137|gb|EAQ57395.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191482|gb|EAQ95454.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 84-25] gi|112360781|emb|CAL35581.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926681|gb|ADC29033.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni IA3902] gi|315927422|gb|EFV06760.1| Pilus biogenesis protein MshL [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929011|gb|EFV08254.1| General secretory pathway protein D [Campylobacter jejuni subsp. jejuni 305] Length = 472 Score = 165 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 17/264 (6%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S K + L + QV + V+I V + G + S+ + +F Sbjct: 201 SVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQ-NFNIGLNSQVNNENSFIQFQ 259 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G G+ +F+++++ L + L+ P L A++ Q A + G Y+ Sbjct: 260 NGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 319 Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345 SS G + TT G++L+ P + G+I LRI +S+ + Sbjct: 320 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE 379 Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P +K + V++ + T++L GL+ D K I LSKIPILG+LF+ Sbjct: 380 PRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVL 439 Query: 404 NREETEIFIAATPFLVKPVAMRDL 427 N + TEI TP +V V L Sbjct: 440 NSKATEIVFIITPSIVDSVNAPSL 463 >gi|149189065|ref|ZP_01867353.1| MSHA biogenesis protein MshL [Vibrio shilonii AK1] gi|148837028|gb|EDL53977.1| MSHA biogenesis protein MshL [Vibrio shilonii AK1] Length = 538 Score = 165 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 61/279 (21%), Positives = 106/279 (37%), Gaps = 30/279 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ +++ QV L+ I EV Q G S G++ G + V Sbjct: 253 REFLDMSQQRLHRQVILEAKILEVTLSDGYQQGISWSNIGAAIGSGGVSISRPAQNPVPP 312 Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 GG +V + FE VL + + L+ P +TA + Q + G Sbjct: 313 LNQIGTLLGGQTNVT--ITDGHFEAVLSFMATQGDLNVLSSPRITAANNQKSVIKVGTDE 370 Query: 294 LYKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 + T S+ +T G+ L TP + G + L + V E Sbjct: 371 YFVTDISTVIGSGENANVAPQVELTPFFSGISLDVTPQIDEKGNVLLHVHPAVIEVQEEK 430 Query: 344 NAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 ++ +R++D+ + G +V+ GL+K ++ +P L IP L Sbjct: 431 KEIEVLGDSIIVPLAKSSIRESDSVIRAADGDVVVIGGLMKSATTEMVSKVPYLGDIPAL 490 Query: 395 GALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD 432 G LFRN++ E+TE+ I P +V +++ R D Sbjct: 491 GHLFRNTQNVTEKTELVILLRPTVVGVNTWQKEVERSRD 529 >gi|294666182|ref|ZP_06731437.1| type II secretory pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604047|gb|EFF47443.1| type II secretory pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 668 Score = 165 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 62/282 (21%), Positives = 113/282 (40%), Gaps = 42/282 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSFAA 232 V+ L++ +QV ++ + E+ K++G Q + G + SG S Sbjct: 324 DVIRQLDVH-REQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVP 382 Query: 233 DFGGKFVSEGGDFSVKGVL-------------------------DRFSFETVLHALERAT 267 + G+ VL + F ++ A++ T Sbjct: 383 LAAAAAGTRSGNAEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDT 442 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTV 322 L+ P++ + + A G + T ++ ++ D GV L P + Sbjct: 443 GSNLLSTPSIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQI 502 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + G I L I+ EVS V+A + R+ +T V + +G + L GLL + +Q Sbjct: 503 NTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQT 562 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 E +PLL +P LGALFR+ NR++T + + P +++ A Sbjct: 563 VEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 604 >gi|218294935|ref|ZP_03495789.1| type II and III secretion system protein [Thermus aquaticus Y51MC23] gi|218244843|gb|EED11367.1| type II and III secretion system protein [Thermus aquaticus Y51MC23] Length = 751 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 10/233 (4%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L+V I EV+ ++ + +G + + + G + D G + F L Sbjct: 527 PQVNLRVRIQEVQSNLTRSLGLKWNTI--AGGNVVASILDSGLSLI-----FDSTRSLAA 579 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + L AL+R R L + T +S Q+A SG L + V + D G Sbjct: 580 LNIVATLDALQRQGLSRALRDVNQTVLSNQTARLQSGETFLIRRVVENR--VERVPFDIG 637 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 +++ TP + + G+I L I+ EVS V GD+ + + TT+ + G T+VL G Sbjct: 638 IIVEVTPQITADGQILLNIRAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVRDGQTVVLGG 697 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 L + Q +G+P+L IP++G LF+ + E+ + T ++K A R Sbjct: 698 LTSQENTQTVQGVPILMDIPLIGELFKQRTGETTDRELLVVITADILKETAER 750 >gi|90424504|ref|YP_532874.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB18] gi|90106518|gb|ABD88555.1| type II and III secretion system protein [Rhodopseudomonas palustris BisB18] Length = 774 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 26/253 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFVSEGGDFSVKGVL 251 QV + TIAEV Q G Q +T G S +S D + + Sbjct: 489 QVAIDATIAEVTLTDDLQFGVQTYLTSRDFGMPADRGSLGTASSSALISAASDVVLNRAI 548 Query: 252 DRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---- 299 F+F + +L+AL T ++ L+ P+L I Q A+ G + +T S Sbjct: 549 PGFNFLVGSGSSPKAILNALHAITEVKVLSNPSLVVIDNQVATLQVGDEIPIQTGSATVL 608 Query: 300 --SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------M 348 S+T A + G++L P + + G + L I+ E+S PV + Sbjct: 609 SSSNTIANTTDYRRTGILLQVVPRINANGNVRLEIEQEISNPVASSSTSSSSSTSTNSLT 668 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ RK ++V + SG T++LAGL+ D + + GIP L ++P +G +F + + T Sbjct: 669 PTVSTRKVKSSVAVASGQTVLLAGLISDTQNKTRSGIPGLDQLPGVGDVFSQTEKIMKRT 728 Query: 409 EIFIAATPFLVKP 421 E+ I P +++ Sbjct: 729 ELIIFIRPQIIRD 741 >gi|223935099|ref|ZP_03627017.1| type II and III secretion system protein [bacterium Ellin514] gi|223895983|gb|EEF62426.1| type II and III secretion system protein [bacterium Ellin514] Length = 612 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 76/394 (19%), Positives = 140/394 (35%), Gaps = 52/394 (13%) Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G N+ ++ ++ + + +D A E + R I V +VL+ Sbjct: 197 GNYNLTIVDDPRTKIARITV---KDPAAPEPLVTRVIQLKYANVT----NIVLNVTGVLQ 249 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 R T ++ +++ L+ A + QV ++ + E ++ G Sbjct: 250 DKRSRVAADVRTSQLVVLATDRELTAVDELVAKLDTATK-QVLIEARLVETSKNPTTAKG 308 Query: 215 FQHSITGSSS----GPSKSFAADFG-GKFVSEGGDFSV---------------------- 247 + T ++ G + AA F G + F Sbjct: 309 VDWTGTAAAQNVRFGNNSILAAPFTRGTPPTPANPFGTPDQQAVPSTILDPTQPMIAANT 368 Query: 248 -------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 L+ VL L + L+ P + ++A+ + ++ Sbjct: 369 HNGFLPNTFFLNADGASAVLSFLNTDNDAQVLSTPRAVTLDNETATLSVTRAQPIFKTTA 428 Query: 301 ST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPS 350 T G + VT + G +L TP + + I LR+ EVS ++ + Sbjct: 429 GTQGSPGGSEVTYTNVGTILKVTPRISANKMISLRVIPEVSSVAGTDRKIVSGQINEADI 488 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + VR DT V +PSG T+V+ GL+ DD + +PLL IP LGA FR+ + + + Sbjct: 489 FDVRHIDTQVLIPSGNTLVMGGLVSDDRTKSYIKVPLLGDIPYLGAAFRHESKTQNKKNL 548 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 I TP +V+ + + + D+ F Sbjct: 549 IIFVTPTIVETEDFQPTQTDFLKHKLPDENSTDF 582 >gi|223938688|ref|ZP_03630578.1| type II and III secretion system protein [bacterium Ellin514] gi|223892676|gb|EEF59147.1| type II and III secretion system protein [bacterium Ellin514] Length = 785 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 112/307 (36%), Gaps = 26/307 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------- 226 K ++ L++ QV ++ I EV D + +G + T S Sbjct: 481 KDIVGKLDVVLA-QVLIEAIIMEVTLDDTRDLGVSYLQTSPSGNNYFQGIGAIKNGPFAS 539 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 +FA+ S FS + F + A I L+ P + +A+ Sbjct: 540 FSNFASTATNAANSLPSGFSYLAQFNN-DFSATITAAATDNRINVLSRPRIQTSHAVTAN 598 Query: 287 FTSGGQHLYKTVSSSTG-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 G Y T + G ++ G+ L TP + G + + I +V + Sbjct: 599 LQIGDTVPYVTGTYFGGLNGQASSQYQQTFVGINLQVTPLINPDGLVVMDITQDVQQLGT 658 Query: 342 G--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ +P+ R A V + TI+L G + + K G+PLL IP+LG LFR Sbjct: 659 PTIIDNNPVPTTTKRTAQAKVSVKDRDTIILGGFISSTKSRSKSGVPLLMNIPVLGYLFR 718 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 ++ + + TE+ + P ++ L +R D A+A F K E Sbjct: 719 STSDSNKRTELIVLIRPTVLPTPEAAALVATRERDRLPGVKAAEADFRKEEAKRLKQAEK 778 Query: 458 SEVEGQN 464 +V Sbjct: 779 IQVPRDE 785 >gi|90020782|ref|YP_526609.1| MSHA biogenesis protein MshL [Saccharophagus degradans 2-40] gi|89950382|gb|ABD80397.1| type II and III secretion system protein [Saccharophagus degradans 2-40] Length = 543 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 65/320 (20%), Positives = 120/320 (37%), Gaps = 24/320 (7%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 + L +V + + V + L S+ ++ ++ ++ QV L+ I Sbjct: 219 KLTLSAIVGGEANGRNVVVNPQAGLVVVRALPSEISAVREFLDRSELSVRRQVILETKIV 278 Query: 204 EVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFS--VKGVLDRFSFETVL 260 EV+ + Q G + I G D VS + + +L Sbjct: 279 EVKLNDGFQAGVNWNEIRGQMLLTKNVETFDVPVDIVSASENVGEIFSSIFRIGDISQLL 338 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----------SSSTGATSVTT 309 LE ++ L+ P ++ ++ Q A G + T ++S +T+ Sbjct: 339 SLLETQGNVQVLSSPRVSTVNNQKAVIRVGSDEFFVTGISSQTTSTAASTTSAPNIELTS 398 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTV 360 G+ L TP + G + L + VSE + + + VR++D+ V Sbjct: 399 FFSGISLDVTPQIADNGDVILHVHPIVSEVTDQNKDITLGNEKFSLPLALREVRESDSIV 458 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 SG IVL GL+K+ + + P L +P+L LFR E+TE+ I P +V+ Sbjct: 459 RAQSGQIIVLGGLMKEKLNDVYSKRPGLGDVPVLNTLFRKRSKVSEKTELVILLRPIVVE 518 Query: 421 P-VAMRDLSRPDDHYSVEDD 439 D+++ + D Sbjct: 519 DNTFADDINQSRQRVNSMSD 538 >gi|254418127|ref|ZP_05031851.1| general secretion pathway protein D [Brevundimonas sp. BAL3] gi|196184304|gb|EDX79280.1| general secretion pathway protein D [Brevundimonas sp. BAL3] Length = 718 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 58/301 (19%), Positives = 109/301 (36%), Gaps = 37/301 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------- 233 V+ L++ QV ++ + E+ + ++++G Q G + ++ A+ Sbjct: 369 DVIRRLDVR-RQQVLIEAIVVELSDNAVRELGVQWLYGGENGVGLTNYTANATPLVNMAG 427 Query: 234 ---------------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 + G + F +++A + L Sbjct: 428 GAYAGQLDKDDPLREQLQTLALNSLVGANGFIGGAGVEVGDGLFGFIINAAKTDKGSNLL 487 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGR 327 P++ + + A+F G + T + S T+ D GV L P + + G Sbjct: 488 QTPSIMTLDNEEATFLVGQEVPITTGQTLLDGNSNPFTTTDRKDIGVRLTVKPQINAGGS 547 Query: 328 IGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L ++ EVS G+ G R+ TT+ + G V GLL + + IP Sbjct: 548 ITLTLRQEVSAINGGLTRGATDLVLDKRELQTTLVVDDGDIAVAGGLLDQNDIISTDKIP 607 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 L +P +GALFR++ R T + + P +V+ D + D +A + Sbjct: 608 GLGDLPGVGALFRSNSRQRGRTNLMVFLRPTIVRTREEAQGLAADRWGYMRDQQQAVQPD 667 Query: 447 R 447 R Sbjct: 668 R 668 >gi|294627648|ref|ZP_06706230.1| type II secretory pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598000|gb|EFF42155.1| type II secretory pathway protein D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 668 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 63/282 (22%), Positives = 112/282 (39%), Gaps = 42/282 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------SGPSKSFAA 232 V+ L++ +QV ++ + E+ K++G Q + G + SG S Sbjct: 324 DVIRQLDVH-REQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVP 382 Query: 233 DFGGKFVSEGGDFSVKGVL-------------------------DRFSFETVLHALERAT 267 + G+ VL + F ++ A++ T Sbjct: 383 LAAAAAGTRSGNAEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDT 442 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTV 322 L+ P++ + + A G + T A ++ D GV L P + Sbjct: 443 GSNLLSTPSIMTLDNEQARILVGQEVPITTGEVLGAANDNLFRTIQRQDVGVELEVRPQI 502 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMP-SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + G I L I+ EVS V+A + R+ +T V + +G + L GLL + +Q Sbjct: 503 NTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQT 562 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 E +PLL +P LGALFR+ NR++T + + P +++ A Sbjct: 563 VEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAA 604 >gi|283956850|ref|ZP_06374323.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni 1336] gi|283791576|gb|EFC30372.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni 1336] Length = 470 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 17/264 (6%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S K + L + QV + V+I V + G + S+ + +F Sbjct: 199 SVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQ-NFNIGLNSQVNNENSFIQFQ 257 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G G+ +F+++++ L + L+ P L A++ Q A + G Y+ Sbjct: 258 NGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 317 Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345 SS G + TT G++L+ P + G+I LRI +S+ + Sbjct: 318 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE 377 Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P +K + V++ + T++L GL+ D K I LSKIPILG+LF+ Sbjct: 378 PRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVL 437 Query: 404 NREETEIFIAATPFLVKPVAMRDL 427 N + TEI TP +V V L Sbjct: 438 NSKATEIVFIITPSIVDSVNAPSL 461 >gi|153952576|ref|YP_001398775.1| general secretory pathway protein D [Campylobacter jejuni subsp. doylei 269.97] gi|152940022|gb|ABS44763.1| general secretory pathway protein D [Campylobacter jejuni subsp. doylei 269.97] Length = 470 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 17/264 (6%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S K + L + QV + V+I V G S++ + +F Sbjct: 199 SVKNYLQKLENRLKKQVIIDVSILAVSLSESHSSGINWQ-NFDIGLNSQANNENSFIQFQ 257 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G G+ +F+++++ L + L+ P L A++ Q A + G Y+ Sbjct: 258 NGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 317 Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345 SS G + TT G++L+ P + G+I LRI +S+ + Sbjct: 318 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE 377 Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P +K + V++ + T++L GL+ D K I LSKIPILG+LF+ Sbjct: 378 PRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVL 437 Query: 404 NREETEIFIAATPFLVKPVAMRDL 427 N + TEI TP +V V L Sbjct: 438 NSKATEIVFIITPSIVDSVNAPSL 461 >gi|149194260|ref|ZP_01871357.1| putative type II protein secretion system D protein [Caminibacter mediatlanticus TB-2] gi|149135435|gb|EDM23914.1| putative type II protein secretion system D protein [Caminibacter mediatlanticus TB-2] Length = 450 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 99/267 (37%), Gaps = 27/267 (10%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + K MN L + +V + V I V + G S S + + Sbjct: 186 AVDKFMNNLLNSLTKEVLIDVKIYSVELSKSHKTGIDWS--------QLSLSLPNSSVPL 237 Query: 240 SEGGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK- 296 F + + F+ L+ L + + +++ P + ++ Q A + G YK Sbjct: 238 RAKYIFGSGSIFNSATFNSAAFLNFLAQNGNVNSISNPKIMTLNNQKAIISVGDTIYYKY 297 Query: 297 ---TVSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVN 344 V+ G GV+L TP + G I L I +S + Sbjct: 298 ASKVVTDQNGNPQTQYTIGNKFVGVILDITPQISDDGTIILSIAPRISAFRDLNQLSTQT 357 Query: 345 AGDMPSYRV-RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 DMP + V++ TIVL GL+ DD G+P+L +IPI+ LF + Sbjct: 358 VRDMPPDTKDNTMLSVVKVKDNDTIVLGGLISDDKSLKVNGVPILKEIPIVKYLFSSKER 417 Query: 404 NREETEIFIAATPFLV---KPVAMRDL 427 + E+ TP ++ K +RDL Sbjct: 418 ITNKKELVFVITPHIINLKKKKTLRDL 444 >gi|57242551|ref|ZP_00370489.1| general secretory pathway protein D [Campylobacter upsaliensis RM3195] gi|57016836|gb|EAL53619.1| general secretory pathway protein D [Campylobacter upsaliensis RM3195] Length = 468 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 103/269 (38%), Gaps = 17/269 (6%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + + L + QV + V+I V + G + + + S Sbjct: 198 EYITKLENRLKKQVIIDVSIIAVNLNENHSSGINWQNFNLDFVSTTQNGQNSFIQLQSGQ 257 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G G+ +F +VL+ L + + L+ P L A++ Q A + G Y+ SS Sbjct: 258 GFVKNLGLRANINFNSVLNFLSQNGKTQVLSNPKLMALNNQQAIISVGDTINYQVKESSK 317 Query: 303 GATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------ 347 G + TT G++L P + +I LRI +S+ + Sbjct: 318 GTENGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPRT 377 Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P +K T V + + T++L GL+ + + + LSKIP+LG LF + Sbjct: 378 IAPDTIQKKLSTVVSMENNQTLILGGLISHNQIKEASEVSFLSKIPLLGLLFSGDETSSN 437 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 TEI TP +V M LS D + Sbjct: 438 STEIVFIITPSIV-DKQMGVLSLKDLGFR 465 >gi|220915838|ref|YP_002491142.1| general secretion pathway protein D [Anaeromyxobacter dehalogenans 2CP-1] gi|219953692|gb|ACL64076.1| general secretion pathway protein D [Anaeromyxobacter dehalogenans 2CP-1] Length = 902 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 120/326 (36%), Gaps = 59/326 (18%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V+ D + L + + S+ ++++ L+ QV ++ I EV Sbjct: 451 SGEVKITADKTQNALLVQA-------SGADFSAVQRLVEKLD-RPRRQVFVEAVIMEVNL 502 Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247 ++G S TG + S A GG G S Sbjct: 503 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVNSLDMSSAIALGGFLTGYTGPISAEL 562 Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------- 298 G + S ++ AL+ + + L+ P L A + + T G +++ Sbjct: 563 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPSGLS 622 Query: 299 ----SSSTGATS-----------------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 S TGA+S + + + L P + G I L I+ E + Sbjct: 623 NLLSGSGTGASSTVGSALGTQGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQT 681 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 E + + P+ R T + TIV+ GL++D + IP L +PILG L Sbjct: 682 EEIAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWL 741 Query: 398 FRNSRFNREETEIFIAATPFLVKPVA 423 FR++ +++ + + TP++++ A Sbjct: 742 FRDTTTTKQKVNLLLFLTPYIIRDEA 767 >gi|284432091|gb|ADB84853.1| PilQ [Bdellovibrio bacteriovorus] Length = 726 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 101/245 (41%), Gaps = 16/245 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKF 238 QV+++ I E + + IG S TG+ + PS + G Sbjct: 467 TQPAQVSIEGXIVEAKESFTRNIGVNWSATGAPIKLGSTXRGPVNMNPSFNVNQSAAGSS 526 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + +V + + L E ++ ++ P + +S + A + + V Sbjct: 527 GALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQTTEVPVRQV 586 Query: 299 SSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--RVR 354 + + AT + + L TP V + G + +++ V++ ++ R Sbjct: 587 TQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVLVNRQFRGADVSSAGQGAFAVNSR 646 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +A+T V + +G T V+ G+ + + + G+P ++P + LF+ ++E++E+ I Sbjct: 647 EANTRVLVKNGQTAVIGGIYQSEATDGEVGVPWFRQLPFVSYLFKTKNISKEKSELLILL 706 Query: 415 TPFLV 419 TP ++ Sbjct: 707 TPRIM 711 >gi|319791845|ref|YP_004153485.1| general secretion pathway protein d [Variovorax paradoxus EPS] gi|315594308|gb|ADU35374.1| general secretion pathway protein D [Variovorax paradoxus EPS] Length = 770 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 116/311 (37%), Gaps = 44/311 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGPSKSFAADF---- 234 + V++ L+ QV ++ I EV + G Q + G + S + Sbjct: 406 RAVIDKLD-GRRAQVMIEALIVEVSANKAANFGVQWQSALGNNAVIGTNSSLNRNNILAL 464 Query: 235 -----------GGKFVSEGGDFSVKG-VLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 + G + + G + ++ + + L+ P L + Sbjct: 465 TQALATRNPAGLASSIQPGLNLGIAGKIGGQYILGAIANFFNSDGDANVLSTPNLLTLDN 524 Query: 283 QSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + A G + T S ++ + T+V D G+ L PT+ G + + I Sbjct: 525 EEAKIIIGQNVPFPTGSYASTSGSVGVNPFTTVERKDVGLTLRVRPTINENGTVRMTIFQ 584 Query: 335 EVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 E S A + P+ R +++V + GG ++L GLL D E IPL IP+ Sbjct: 585 ETSTVDQNSLANPNGPTTNKRSIESSVLVEDGGLVMLGGLLSDTYNNNIEKIPLAGDIPV 644 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 LG LF+N R ++ + + P +++ A +AF ++R ++I G Sbjct: 645 LGNLFKNENRTRNKSNLMMFLRPAVMRDGA---------------STEAFAYDRYDEIRG 689 Query: 454 PKEASEVEGQN 464 + + N Sbjct: 690 QQLQVQPNTDN 700 >gi|157415698|ref|YP_001482954.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81116] gi|157386662|gb|ABV52977.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81116] gi|307748339|gb|ADN91609.1| General secretory pathway protein D [Campylobacter jejuni subsp. jejuni M1] gi|315930985|gb|EFV09960.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 327] Length = 470 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 17/264 (6%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S K + L + QV + V+I V + G + S+ + +F Sbjct: 199 SVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQ-NFNIGLNSQVNNENSFIQFQ 257 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G G+ +F+++++ L + L+ P L A++ Q A + G Y+ Sbjct: 258 NGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 317 Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345 SS G + TT G++L+ P + G+I LRI +S+ + Sbjct: 318 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE 377 Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P +K + V++ + T++L GL+ D K I LSKIPILG+LF+ Sbjct: 378 PRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVL 437 Query: 404 NREETEIFIAATPFLVKPVAMRDL 427 N + TEI TP +V V L Sbjct: 438 NSKVTEIVFIITPSIVDSVNAPSL 461 >gi|296273826|ref|YP_003656457.1| type II and III secretion system protein [Arcobacter nitrofigilis DSM 7299] gi|296098000|gb|ADG93950.1| type II and III secretion system protein [Arcobacter nitrofigilis DSM 7299] Length = 468 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 116/251 (46%), Gaps = 16/251 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 KK +N ++I+ Q+ +K I E+ K++G ++ + G + S + + Sbjct: 162 KKFINKIDISNP-QIYIKAKIVEISETKTKEVGLEYGLNGFNKYSSTNLSTFSSSFNSLS 220 Query: 241 ---------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 F + + + ++ L++ AI ++EP++ I+ + +S G Sbjct: 221 NTAINFSEFSTFGFDLNSLSKGLNLSATINFLKQNQAIDVISEPSILCINNKESSIYVGE 280 Query: 292 QHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 +KT ++ + + + G+ L P + S +I L+I T + + + ++ Sbjct: 281 TKSFKTGQTTNTSGTTESFKREEVGLRLKVKPRI-SDNKIILQINTVLEDVKESTTSENL 339 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 ++ TT L + ++++ GL+K Q + G+P+L IPILG LF+N ++ ++ Sbjct: 340 -DTSKKEVITTAILNNAESVIIGGLIKTKKFQTESGLPVLKDIPILGTLFKNEKYINDKM 398 Query: 409 EIFIAATPFLV 419 + + TP++V Sbjct: 399 NLVVIITPYIV 409 >gi|146343151|ref|YP_001208199.1| general secretion pathway protein D [Bradyrhizobium sp. ORS278] gi|146195957|emb|CAL79984.1| General secretion pathway protein D [Bradyrhizobium sp. ORS278] Length = 768 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 62/275 (22%), Positives = 113/275 (41%), Gaps = 29/275 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-------V 247 QV + TIAEV G Q ++ G + + S + + Sbjct: 488 QVGIDATIAEVTLTNELSYGVQAYLSSKVLGLGTDRGSITNTQTTSVATATTAAATTALI 547 Query: 248 KGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 L F+F +L AL T+++ L+ P+L I+ Q+A+ G T S Sbjct: 548 NRALPGFNFLIGHEASPNMILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGS 607 Query: 300 ------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 S+T ++ + G++L P + + G + L ++ E+S A P+ Sbjct: 608 ATVLSSSNTVVNTIDYRNTGIILRVVPRIAANGNVRLEVEQEISNVAAQTAASLTPTVSQ 667 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 RK + + + +G T++LAGL+ + + GIP +IPILG F + TE+ I Sbjct: 668 RKVKSAISVANGQTVLLAGLISEQQTGNRNGIPGFDEIPILGDTFSHQDKKGTRTELIIF 727 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 P +++ + D + V ++ ++ V Sbjct: 728 IRPQIIRDGS--------DAHQVAEELRSKLRGSV 754 >gi|242277876|ref|YP_002990005.1| type II and III secretion system protein [Desulfovibrio salexigens DSM 2638] gi|242120770|gb|ACS78466.1| type II and III secretion system protein [Desulfovibrio salexigens DSM 2638] Length = 534 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 115/247 (46%), Gaps = 12/247 (4%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 +++ L++ QV++K + EV ++GF+ + ++ G A DFG F G Sbjct: 259 IISKLDVRT-MQVSIKAYLVEVTLTDETKLGFEWMFSTNADGTDLKGALDFGHIFDPTGI 317 Query: 244 DFSVK-----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295 + + +++ +F+ +++ + R ++ P + A+ Q AS G + Sbjct: 318 ANTAQEALKFSIINSDNFKMMMNFFASDDSSRVVSAPHIVALDNQKASIAVGTEIPILKL 377 Query: 296 KTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 S ++ + T+D +G+ L+ TPT+ + L+I +S + D Sbjct: 378 TQTSVTSQQNVIKTYDHRKFGMQLNITPTIAENRDVTLKIDQTLSSLLADDTDPDKWQST 437 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A TTV + T+V+ GL+ + K+G P L +P+LG LF + + ++E+ + Sbjct: 438 DRAASTTVLVKDAQTLVIGGLMTVNSALDKKGAPYLRNMPVLGPLFGSQDDSMTKSELLL 497 Query: 413 AATPFLV 419 TP+++ Sbjct: 498 FLTPYVI 504 >gi|253987556|ref|YP_003038912.1| hypothetical protein PAU_00073 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779006|emb|CAQ82166.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 344 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 9/236 (3%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKSFAADFGGKFVSEGGDFS 246 + QV + I R+ L ++G I ++S + + Sbjct: 111 TPQQQVQITAHIVTSSREALHELGIYWGIPIGEQLNTSTGINRLNINQAANDNMHRFALN 170 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + + LE+ + +A P LTA Q AS G Y VS ++ Sbjct: 171 IARIHTSLLELELSA-LEQENLLDIIASPRLTASHQQLASIKQGSDIPY--VSQEKEKST 227 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPS 364 V + + + TP +L +I L ++ + P I ++ G+ + ++ T V + + Sbjct: 228 VQFKEAVLGMEVTPHILRKDKIRLSLKISQNMPGISISQGGGENLTIDKQEIMTQVTVKN 287 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T++L G+ + + + IP LS IP+LG+LF E+ I TP L+ Sbjct: 288 GETLILGGIFQQKKGEKTQKIPYLSDIPLLGSLFDQKGHKHSRRELIIFITPQLMD 343 >gi|226939985|ref|YP_002795058.1| type II and III secretion system protein [Laribacter hongkongensis HLHK9] gi|226714911|gb|ACO74049.1| type II and III secretion system protein [Laribacter hongkongensis HLHK9] Length = 616 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 75/294 (25%), Positives = 122/294 (41%), Gaps = 55/294 (18%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------- 245 QV ++ TIAEV Q G S G G + FA++F G +S+ Sbjct: 304 RQVMIEATIAEVELTRDYQAGVDWSRIGD--GKNWQFASNFSGNGLSQNAGNPAQYFGTV 361 Query: 246 ----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + G+ S + LE R L+ P L A++ QSA Y Sbjct: 362 GQVLQGSTTPAFTGLYRSGSLSAAIRLLEGFGRTRVLSSPKLMALNNQSAILKVVDNVPY 421 Query: 296 KT------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340 T ++T + + + G+V++ TP + GR+ L ++ ++ Sbjct: 422 FTLKIKYEPGTTTNPPTTTYESELHSVPVGIVMNITPQIAPDGRVSLNVRPTITNITGFQ 481 Query: 341 --------------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 G +P +VR+ ++T+ L SG VL GL++D I + GIP Sbjct: 482 RDPAVQLVLADKGASDPGLGLVPQLQVRELESTLRLQSGEIGVLGGLIQDKIDKDSNGIP 541 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLS-----RPDDHY 434 LLS++P++GALF + + +TE+ + P LV +P DLS PD + Sbjct: 542 LLSQLPVVGALFGLRKESARKTELVVFLKPTLVSQPSLTTDLSALRNALPDSRF 595 >gi|254483140|ref|ZP_05096374.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2148] gi|214036662|gb|EEB77335.1| general secretion pathway protein D [marine gamma proteobacterium HTCC2148] Length = 727 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 12/247 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGG--K 237 K ++ L++ QV ++ +I EV + G + + + S F + G Sbjct: 452 KTALDQLDVV-ATQVIIEASIIEVSLTDELRYGLEWTFSNSLGADYDGSGFLSSIAGAES 510 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 S FS + VL+AL + + ++ P++ + A G Q Sbjct: 511 PASIVPGFSYTVTNSIGNVSAVLNALAEESLLNIISTPSVMVLDNHYAYIHVGQQVPIID 570 Query: 298 VSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + + A S+T D GV L P+V + G I + + V++ A + Sbjct: 571 SQTGSLANDTDRVTQSITYRDTGVKLDVRPSVNAGGLITMDVAQSVTDVGEIDAATGQRA 630 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + R ++ V + S ++VL GL++++ +G+P L +PI+G+LF TE+ Sbjct: 631 FLERNIESRVAVRSNESVVLGGLIRENSGTASQGVPWLHSVPIVGSLFGTDSARSNRTEL 690 Query: 411 FIAATPF 417 + TP Sbjct: 691 LVIITPR 697 >gi|302383551|ref|YP_003819374.1| general secretion pathway protein D [Brevundimonas subvibrioides ATCC 15264] gi|302194179|gb|ADL01751.1| general secretion pathway protein D [Brevundimonas subvibrioides ATCC 15264] Length = 688 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 62/260 (23%), Positives = 105/260 (40%), Gaps = 22/260 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +++ L++ QV ++V I E+ ++ +QIG Q + G+ F Sbjct: 384 QDLISQLDLR-RAQVKIEVAIVEITGELGEQIGVQLGLGGAVPDDGVIGGTSFSNGGSDL 442 Query: 242 GGDFSVKG--------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 G S G F +L AL +A L+ P++T + Q A Sbjct: 443 GTVLSALGYPAGRLLGQGLSLAAGSEGEFGLLLQALGTNSAANLLSSPSVTVLDNQPAEI 502 Query: 288 TSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PV 340 G ++T S S+ T+++ D G+ L P V + L + EVS Sbjct: 503 VVGQNVPFRTGSFATDGNSTNPFTTISREDVGLTLRVIPRVHEGDVVKLDVSQEVSSLVT 562 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + R T+V G TIVL GL+ DD +P LS +P++G FR+ Sbjct: 563 TNITGAADLITNRRSIQTSVLANDGETIVLGGLVTDDRMSNNSRVPGLSSLPVVGNAFRS 622 Query: 401 SRFNREETEIFIAATPFLVK 420 R ++ +FI P +++ Sbjct: 623 RRDSQTRRTLFIFLKPTILR 642 >gi|241762850|ref|ZP_04760913.1| type IV pilus secretin PilQ [Acidovorax delafieldii 2AN] gi|241368025|gb|EER62230.1| type IV pilus secretin PilQ [Acidovorax delafieldii 2AN] Length = 712 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 100/276 (36%), Gaps = 42/276 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------- 225 ++++ L++A QV ++ I E R + +G + T + Sbjct: 434 RQLLLSLDVA-VRQVLIEARIVEARDSFGRSLGVRLGGTDLRANRGGDGGYGIGGDNRVA 492 Query: 226 ----------------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + A S+ L A+ Sbjct: 493 FGTSYNNAVASSGAGGTTTTTGNFVNLPASLSNVNSVGSFALSIFNSAANRFLTLELSAM 552 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E R ++ P + A G ++ Y ++++ GAT++ + L TP + Sbjct: 553 EADGKGRIVSSPRIITADQTKALIEQGTEYPY-SITAPNGATTLAFKKAVLKLEVTPQIT 611 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G I L + ++++ G + + T + + +GGT+V+ G+ + + + Sbjct: 612 PEGNIILDL--DINKDSRGETTTQGVAIDTKHIKTQILIENGGTVVIGGIFEMEDTNQEN 669 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP+L +P++G LF++ + E+ + TP ++ Sbjct: 670 KIPVLGDVPVVGNLFKSRTKESTKREMLVFITPKVI 705 >gi|254517138|ref|ZP_05129196.1| general secretion pathway protein D [gamma proteobacterium NOR5-3] gi|219674643|gb|EED31011.1| general secretion pathway protein D [gamma proteobacterium NOR5-3] Length = 770 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 56/275 (20%), Positives = 107/275 (38%), Gaps = 6/275 (2%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G R V E + K+ + L++ QV ++ +I EV+ Sbjct: 459 SGTGTNELVDVRVVADEENNALMVYADGKQYGIVKEALKQLDVV-ATQVIIEASIMEVQL 517 Query: 208 DILKQIGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + G + + G S G + FS VL+AL Sbjct: 518 IDELRYGLEWTFKNGLGSNYDGLGTLAAGAAGPAAVAGFSYTVSNSVGDISAVLNALSEE 577 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTV 322 + I ++ P++ + A + G Q + ++T D GV L P+V Sbjct: 578 SLINVISTPSVMVLDNHVAFISVGDQVPVLQGQTITNGGNSVQNITYRDTGVQLSVRPSV 637 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + G + + I+ V + +A ++ R ++ V + S ++VL GL++++ Sbjct: 638 NAGGLVTMDIEQSVIDVGAIDSATGQRAFLDRTINSRVAVRSSESVVLGGLIRENSSLGD 697 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 G+P+L +IP+ G+LF + + TE+ + TP Sbjct: 698 SGVPILREIPLFGSLFGTTTTDSRRTELLVIITPR 732 >gi|331004879|ref|ZP_08328296.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC1989] gi|330421333|gb|EGG95582.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC1989] Length = 553 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 62/288 (21%), Positives = 122/288 (42%), Gaps = 24/288 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFG 235 ++ ++ + ++ + QV ++ I EV+ Q G + + F Sbjct: 265 AAVRRFLENTRLSVKRQVIIEAKILEVQLSKNHQTGVNWNAINGQLLLGKNASDFDTGVT 324 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 +SEG ++ T+L LE ++ L+ P ++ ++ Q A G + Sbjct: 325 INEISEGVGEVFSSLIRISDTSTLLSLLETQGEMQVLSSPRVSTVNNQKAVIRVGTDQFF 384 Query: 296 KTV-----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----- 339 T ++S+ +++ G+ L TP + G + L I +S Sbjct: 385 VTGISNSTISNASSTTSSPDIELSSFFSGISLDVTPQISDEGDVILHIHPVISTVTEEQK 444 Query: 340 --VIGVNAGDMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V+G +A +P +R++D+ V+ SG IVL GL+++ I + P LS IP+ G Sbjct: 445 NIVVGDSAFSLPLALRDIRESDSIVKAKSGQVIVLGGLMQERINHVGGKRPGLSDIPVAG 504 Query: 396 ALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVEDDAKA 442 LF ++ R ++E+ I P +V + + D + D +S ++A Sbjct: 505 GLFNSNTDIRSKSELIILLKPTVVEQDSWVDDFNTSQDRFSKLTASQA 552 >gi|261257910|ref|ZP_05950443.1| w0022 [Escherichia coli O157:H7 str. FRIK966] Length = 275 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 16/220 (7%) Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSS 301 + + ++ +L AL ++ LA P++ + A+F G + +T S Sbjct: 30 GIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGD 89 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADT 358 +V G+ L P + + L I+ EVS + ++ R Sbjct: 90 NIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTN 149 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + + +G T+V+ GLL I+ + +PLL IP+LG LFR + + + P + Sbjct: 150 AMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAKSEQTAKRNLMLFIRPTI 209 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 ++ D + K FN+ KE + Sbjct: 210 IR---------ERDGFRHASAEKYQSFNQEQVQSRGKETT 240 >gi|124515780|gb|EAY57289.1| putative general secretion pathway protein D [Leptospirillum rubarum] gi|206602163|gb|EDZ38645.1| Putative general secretion pathway protein D [Leptospirillum sp. Group II '5-way CG'] Length = 555 Score = 164 bits (416), Expect = 3e-38, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 113/259 (43%), Gaps = 11/259 (4%) Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 TG++ V GG F+ GV + S T+L+AL+ + ++TL+ P + Sbjct: 290 ATGAAGAAQSLTGLTGLIAGVLTGGSFNYGGV-NYPSIGTLLNALQTDSDVKTLSTPEIL 348 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 A Q A T G + T S T T + + G+ L TP +L+ R+ L ++ Sbjct: 349 ATDSQKAKITVGEDVPFITGQSQTVGGNVMTMIQRQNVGITLDITPHILAHDRVRLNLKQ 408 Query: 335 EVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ P+ R T + + SG T+V+ GL+ + K IP L + Sbjct: 409 TITALTNASQLIGTMAVGPTTTKRSTKTILTVRSGQTVVIGGLISSEKSLNKSTIPWLGE 468 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 IP+LG LF +++ ++ ++ I TP++++ + D +++ A+ + Sbjct: 469 IPVLGYLFSSTQNEKKRDDLLIFLTPYIIRNAYSFAQVKHDAPAELKEAARKD--GLIQT 526 Query: 451 IYGPKEASEVEGQNYKGAI 469 + PK+ S Y G + Sbjct: 527 LILPKKTSSRSAGFYLGTV 545 >gi|86151899|ref|ZP_01070112.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 260.94] gi|148925643|ref|ZP_01809331.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni CG8486] gi|315124908|ref|YP_004066912.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841007|gb|EAQ58256.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 260.94] gi|145845653|gb|EDK22744.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni CG8486] gi|315018630|gb|ADT66723.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 470 Score = 164 bits (416), Expect = 3e-38, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 17/264 (6%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S K + L + QV + V+I V + G + S+ + +F Sbjct: 199 SVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQ-NFNIGLNSQVNNENSFIQFQ 257 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G G+ +F+++++ L + L+ P L A++ Q A + G Y+ Sbjct: 258 NGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 317 Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345 SS G + TT G++L+ P + G+I LRI +S+ + Sbjct: 318 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE 377 Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P +K + V++ + T++L GL+ D K I LSKIPILG+LF+ Sbjct: 378 PRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVL 437 Query: 404 NREETEIFIAATPFLVKPVAMRDL 427 N + TEI TP +V V L Sbjct: 438 NSKATEIVFIITPSIVDSVNAPSL 461 >gi|86153104|ref|ZP_01071309.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613593|ref|YP_001001123.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81-176] gi|167006016|ref|ZP_02271774.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81-176] gi|85843989|gb|EAQ61199.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249586|gb|EAQ72545.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 81-176] gi|315058928|gb|ADT73257.1| Type II secretion outermembrane pore forming protein (PulD) [Campylobacter jejuni subsp. jejuni S3] Length = 470 Score = 164 bits (416), Expect = 3e-38, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 17/264 (6%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S K + L + QV + V+I V + G + S+ + +F Sbjct: 199 SVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQ-NFNIGLNSQVNNENSFIQFQ 257 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G G+ +F+++++ L + L+ P L A++ Q A + G Y+ Sbjct: 258 NGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 317 Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345 SS G + TT G++L+ P + G+I LRI +S+ + Sbjct: 318 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE 377 Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P +K + V++ + T++L GL+ D K I LSKIPILG+LF+ Sbjct: 378 PRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVL 437 Query: 404 NREETEIFIAATPFLVKPVAMRDL 427 N + TEI TP +V V L Sbjct: 438 NSKATEIVFIITPSIVDSVNAPSL 461 >gi|27381133|ref|NP_772662.1| general secretion pathway protein D [Bradyrhizobium japonicum USDA 110] gi|27354300|dbj|BAC51287.1| blr6022 [Bradyrhizobium japonicum USDA 110] Length = 793 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 129/307 (42%), Gaps = 34/307 (11%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSG 225 NQ + ++ + ++ + Q+ ++ TIAEV + G Q SI+ + SG Sbjct: 485 ANQESQRIVEQTIRQIDRP-QRQIAIEATIAEVTLNDQLNYGVQFFLASQKGSISNTISG 543 Query: 226 PSKSFAADFGGKFVSEGGDFSVKG------------VLDRFSFETVLHALERATAIRTLA 273 S S + S + + + S VL AL T ++ L+ Sbjct: 544 VSNSATIGSNTEPASNAVNAAAGALLGRALPGFNFLIGAENSPRVVLDALHGITNVKVLS 603 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327 P+L + Q+A+ G Q + T + ++T ++ + G++L P + G Sbjct: 604 NPSLVVLDNQAATLQVGDQVPFSTGTATVLTANNTVVNTIDYKNTGIILRVLPRANANGN 663 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L I+ E+S G P+ R+ +++ + SG T++LAGL+ + + ++G+P+ Sbjct: 664 VVLDIEQEISSVAAGSANSLTPTISQRRVKSSIAVTSGQTVLLAGLISETENRQRQGLPI 723 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 L IP +G F + R TE+ + P ++K D + + ++ + R Sbjct: 724 LDSIPGMGDAFSHQTTARARTELILFIRPTVIKDGV--------DAHVIAEEMRTKMNGR 775 Query: 448 VNKIYGP 454 + P Sbjct: 776 LVGTSNP 782 >gi|197121137|ref|YP_002133088.1| general secretion pathway protein D [Anaeromyxobacter sp. K] gi|196170986|gb|ACG71959.1| general secretion pathway protein D [Anaeromyxobacter sp. K] Length = 904 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 62/324 (19%), Positives = 119/324 (36%), Gaps = 57/324 (17%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V+ D + L + + S+ ++++ L+ QV ++ I EV Sbjct: 451 SGEVKITADKTQNALLVQA-------SGADFSAVQRLVEKLD-RPRRQVFVEAVIMEVNL 502 Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247 ++G S TG + S A GG G S Sbjct: 503 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVNSLDMSSAIALGGFLTGYTGPISAEL 562 Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 G + S ++ AL+ + + L+ P L A + + T G +++ + +G + Sbjct: 563 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPSGLS 622 Query: 306 S--------------------------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + + + + L P + G I L I+ E +E Sbjct: 623 NLLSGSSATSTVGSALGTQGLSSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQTEE 681 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + P+ R T + TIV+ GL++D + IP L +PILG LFR Sbjct: 682 IAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFR 741 Query: 400 NSRFNREETEIFIAATPFLVKPVA 423 ++ +++ + + TP++++ A Sbjct: 742 DTTTTKQKVNLLLFLTPYIIRDEA 765 >gi|255322161|ref|ZP_05363307.1| type II and III secretion system protein [Campylobacter showae RM3277] gi|255300534|gb|EET79805.1| type II and III secretion system protein [Campylobacter showae RM3277] Length = 481 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 66/331 (19%), Positives = 122/331 (36%), Gaps = 55/331 (16%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 +L+ +I + + ++ +G S+ + + + + QV + V+I Sbjct: 129 KAILNNTTESIVAPDPIINANAGLVTVTGTAAQLRRVSEYIKD-IQERLKKQVVIDVSII 187 Query: 204 EVRRDILKQIGFQHS-----------------------ITGSSSGPSKSFAADFG----- 235 V G S ++ P+ + + +G Sbjct: 188 SVELANSYTKGVDWSKFNIGFKTGLYNRTVVTGVTETVGQDAAGNPTTTLSRTYGLIPAN 247 Query: 236 -------GKFVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 G + G S+ + F+ + VL+ LE + ++ P +T ++ Q A Sbjct: 248 DLFWSNRGNGLGGGFSQSMNLIAGFNFNLDGVLNFLETNGRTKVVSSPKITTLNNQQALI 307 Query: 288 TSGGQHLYKTVSSS------TGATSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVS 337 + G Y+ S G T++T Y G++L+ P V +I LRI +S Sbjct: 308 SVGDNVNYRVQEESQNNNALNGKTTITYKQYSVFIGILLNILPEVSDDNKIMLRINPSLS 367 Query: 338 EPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + P +K T V++ SG TIVL GL+ + +P L Sbjct: 368 SFKYNEDDVRQSTTIREIAPDTIQKKLSTVVQVNSGDTIVLGGLIAQSKGKENTKVPFLG 427 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+LG F++++ N TE+ TP +V Sbjct: 428 DIPVLGHAFKSTKDNLRTTELVFIITPRIVD 458 >gi|289662170|ref|ZP_06483751.1| fimbrial assembly protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 652 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 84/203 (41%), Gaps = 8/203 (3%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + GG S + + F+ + L A++ ++ P + + + Sbjct: 444 SGLNIDLGAGGFTTSGAAGLAYTLLGSHFNLDIELSAMQEEGRGEVVSNPRIVTANQREG 503 Query: 286 SFTSGGQHLYKTVSSST-----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 G + Y T+S + +V + + L TPT+ + R+ L + + E Sbjct: 504 VIKQGREIGYVTISGAGAAGGGSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVA 563 Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + G +P R+ +T V + G T+V+ G+ + ++ +P L IP LG L Sbjct: 564 RFITLPQYGTVPEINRREVNTAVLVADGETVVIGGVYEFTDRESVAKVPFLGDIPFLGNL 623 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 F+ ++E+ E+ + TP +++ Sbjct: 624 FKKRGRSKEKAELLVFVTPKVLR 646 >gi|162454464|ref|YP_001616831.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So ce 56'] gi|161165046|emb|CAN96351.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So ce 56'] Length = 774 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 104/279 (37%), Gaps = 44/279 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+ QV ++ + E ++ IG Q G+ S + + Sbjct: 491 EELVRSLDTQTP-QVLIEARVVEATSRYVRDIGIQWGGDGTFSAATGNPTGLVFPSAIGI 549 Query: 230 -------------------------FAADFG---GKFVSEGGDFSVKGVLDRFSFETVLH 261 FA + G F++ + + + L Sbjct: 550 AGGATDSNSPTGGLSPFSSQVSNPNFAVNLPAIVGAGQGGALGFTLGSINNTVNLGVRLS 609 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 A E + +R ++ P + + + A + G + +S+ T + + L P Sbjct: 610 AAEASGMLRVVSSPRILTLDNREARISQGTLIPFSQISAQ--GVQTTFQEAKLQLLVKPH 667 Query: 322 VLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 V S G + + ++ EP +A P+ R+A+T + + G T V+ G+ + + Sbjct: 668 VTSDGSVAMHVKINRDEPDFNQTSARGDPTILKREAETDLLIMDGHTAVIGGIFTRNTGR 727 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +P IP+LG LF+ R + E+ I TP +V Sbjct: 728 NLDQVPFFGDIPVLGLLFQRRRASDTRNELVIFLTPRIV 766 >gi|191174167|ref|ZP_03035680.1| bacterial type II and III secretion system protein [Escherichia coli F11] gi|191174561|ref|ZP_03036057.1| bacterial type II and III secretion system protein [Escherichia coli F11] gi|300972444|ref|ZP_07171951.1| bacterial type II/III secretion system short domain protein [Escherichia coli MS 200-1] gi|190905169|gb|EDV64812.1| bacterial type II and III secretion system protein [Escherichia coli F11] gi|190905585|gb|EDV65211.1| bacterial type II and III secretion system protein [Escherichia coli F11] gi|300309168|gb|EFJ63688.1| bacterial type II/III secretion system short domain protein [Escherichia coli MS 200-1] Length = 421 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 12/245 (4%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 +N +++A DQV ++ + E + F + G + GG Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298 F G+ D L A++ + + ++ P + SGQ+ + G + T Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGES 297 Query: 299 -SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 + ++ HD GV L TP V+ G++ L I T A D+ + R+ Sbjct: 298 AGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDIIT-NQRQIQ 356 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTV++ G T++L GL+ + +P++SKIP++G +F + + E+ ++I T Sbjct: 357 TTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKADSNEQRIMYILLTAH 416 Query: 418 LVKPV 422 +++P+ Sbjct: 417 IIRPL 421 >gi|87311311|ref|ZP_01093433.1| general secretion pathway protein D (precursor) [Blastopirellula marina DSM 3645] gi|87286051|gb|EAQ77963.1| general secretion pathway protein D (precursor) [Blastopirellula marina DSM 3645] Length = 1199 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 79/324 (24%), Positives = 135/324 (41%), Gaps = 56/324 (17%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSG---PSKSFA 231 K++ L+ A V+++V IA+VR ++++GF+ + S SSG P +F Sbjct: 777 KIVEELD-ARPPMVSIQVLIADVRLGKIEELGFEFGLQDSLLFDRSTVSSGQLDPGYNFN 835 Query: 232 ------------------------ADFG-GKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 +D G G+ G S ++ AL++ Sbjct: 836 NAALGNSSSAASLATASAVGSQGLSDLGLGRTNPALGYGGFVFSAASESVNVLIRALQQD 895 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVL 323 + LA P + + Q A G + Y T + T S+T + GV+L+ P + Sbjct: 896 NRMEVLARPHVMTMDNQPAFIQVGQRVPYITDTQVTNQGTVNSITLENTGVILNVIPRIS 955 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDM-----------PSYRVRKADTTVELPSGGTIVLAG 372 G + + +Q E SE + + P + A TTV SG TIVL G Sbjct: 956 PDGMVVMYVQAERSEVGNEADGIPISINQNGDVIRAPRINTQTATTTVSARSGQTIVLGG 1015 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 L++ + +PLL IP++G+LFR F+ + +E+ I TP +V + +D+ R + Sbjct: 1016 LIQKRTTVVSRRVPLLGDIPVVGSLFRYDSFDGDRSELMIILTPTVVD--SDQDVERVRE 1073 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKE 456 E ++ V +IYG + Sbjct: 1074 Q---EMSRMSWCLADVAEIYGAEA 1094 >gi|86157114|ref|YP_463899.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773625|gb|ABC80462.1| type II and III secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 897 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 118/326 (36%), Gaps = 59/326 (18%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V+ D + L + + S+ ++++ L+ QV ++ I EV Sbjct: 446 SGEVKITADKTQNALLVQA-------SGADFSAVQRLVEKLD-RPRRQVFVEAVIMEVNL 497 Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247 ++G S TG S S A GG G S Sbjct: 498 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVSSLDMSSAIALGGFLTGYTGPISAEL 557 Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 G + S ++ AL+ + + L+ P L A + + T G +++ + G + Sbjct: 558 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPQGLS 617 Query: 306 S----------------------------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + + + + L P + G I L I+ E + Sbjct: 618 NLLSGSGTGGSSTVGAALGTQGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQT 676 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 E + + P+ R T + TIV+ GL++D + IP L +PILG L Sbjct: 677 EEIAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWL 736 Query: 398 FRNSRFNREETEIFIAATPFLVKPVA 423 FR++ +++ + + TP++++ A Sbjct: 737 FRDTTTTKQKVNLLLFLTPYIIRDEA 762 >gi|21232657|ref|NP_638574.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767269|ref|YP_242031.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. 8004] gi|21114464|gb|AAM42498.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572601|gb|AAY48011.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris str. 8004] Length = 648 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 107/286 (37%), Gaps = 48/286 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------- 221 +++++ ++ DQV ++ I + +G + +TG Sbjct: 358 RELISHIDRP-VDQVLIESRIVIATDTFARDLGARFGVTGATGRGILSGSLESNVNYLNT 416 Query: 222 --------SSSGPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 ++ G + A GG S + + F+ + L A Sbjct: 417 SAQSRLEQANGGQVTTLPAHLFPSGLNVDLGAGGFTNSGAAGLAYTLLGSHFNLDIELSA 476 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLH 317 ++ ++ P + + + G + Y T+ + +V + + L Sbjct: 477 MQEEGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGAGVAGGGSQANVQFKEVLLELK 536 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPT+ + R+ L + + E + G +P R+ +T V + G T+V+ G+ Sbjct: 537 VTPTITNDNRVFLNMNVKKDEVARFITLPQYGTVPEINRREVNTAVLVADGETVVIGGVY 596 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ +P L IP LG LF+ ++E+ E+ + TP +++ Sbjct: 597 EFTDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642 >gi|115376293|ref|ZP_01463533.1| type IV pilus secretin PilQ subfamily, putative [Stigmatella aurantiaca DW4/3-1] gi|310823667|ref|YP_003956025.1| type IV pilus secretin PilQ [Stigmatella aurantiaca DW4/3-1] gi|115366718|gb|EAU65713.1| type IV pilus secretin PilQ subfamily, putative [Stigmatella aurantiaca DW4/3-1] gi|309396739|gb|ADO74198.1| Type IV pilus secretin PilQ [Stigmatella aurantiaca DW4/3-1] Length = 906 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 104/272 (38%), Gaps = 36/272 (13%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----------- 229 ++ ++ L+ QV ++ I E + IG Q G ++ + + Sbjct: 629 ARALVRNLDTQTP-QVLIESRIVEATTAFSRSIGVQWGGRGQANAATGNATGLIFPNTIG 687 Query: 230 ------------FAADFGGKF-------VSEGG--DFSVKGVLDRFSFETVLHALERATA 268 F+ D G + +GG F+ L A E Sbjct: 688 GFGSAGGGTPAGFSGDPGFAVNLPAPTTLGQGGALGFTFGSAGGALGLNLRLSAAENDGY 747 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 ++T++ P +T + +A + G + S++ T+ + + L TP + G I Sbjct: 748 VKTISAPKVTTLDNNTARISQGVSIPFSQTSANGANTT--FIEARLSLEVTPHITQDGSI 805 Query: 329 GLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + I + ++P A P+ + ++A+T V + G T V+ G+ IP Sbjct: 806 LMNIIAQNNQPDAANTGANGQPAIQRKEANTQVLVKDGDTTVIGGIYVRRGSTNHASIPF 865 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SKIP+LG FR + + E+ I TP ++ Sbjct: 866 FSKIPVLGFFFRQTTERDDRQELLIFITPRIL 897 >gi|297538911|ref|YP_003674680.1| type II and III secretion system protein [Methylotenera sp. 301] gi|297258258|gb|ADI30103.1| type II and III secretion system protein [Methylotenera sp. 301] Length = 638 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 104/253 (41%), Gaps = 18/253 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +V L++ + EV+R L+ +G P + + D V G Sbjct: 327 PEVMLELQVMEVKRSYLQNLGVN---------PITGISVPVPSSGILTVKDLRVSGNSLV 377 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---SSSTGATSVTTH 310 + L + + LA P + + +A G + T S+ + +V Sbjct: 378 VNGIPGLVFDATSGDVNLLANPKIRVKNKDTARIHIGEKVPVFTANVASTGVTSQTVQYI 437 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEV----SEPVIGVNAGDMPSYR--VRKADTTVELPS 364 D G+ L PT+ + + ++I V + V A ++R R A T + L Sbjct: 438 DAGLKLEVEPTISAADDVTIKINLNVGSIGDKVVASSGASQSIAFRVGTRLATTQLRLHD 497 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T +LAGL+ D ++ GIP LSKIP+LG LF N ++ +TEI ++ TP +++ Sbjct: 498 GETQILAGLIDDQDRKNVSGIPGLSKIPLLGKLFSNQTDDKVKTEIVLSITPHIIRQRTP 557 Query: 425 RDLSRPDDHYSVE 437 + D E Sbjct: 558 QQAHEADIWTGSE 570 >gi|325983467|ref|YP_004295869.1| type II and III secretion system protein [Nitrosomonas sp. AL212] gi|325532986|gb|ADZ27707.1| type II and III secretion system protein [Nitrosomonas sp. AL212] Length = 756 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 85/414 (20%), Positives = 153/414 (36%), Gaps = 60/414 (14%) Query: 51 SIGLNKVIILQVPVDVQ-DVLVSDPTKAD------------VVVHSPRTMYLFGKNVGQA 97 + G+N V + D + + V D T D V + ++ ++ + Sbjct: 210 TAGINFVFDKDIRQDGKISIFVRDNTIEDILKLILTTNQLAYKVLNSNSLLIYPNTPAK- 268 Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157 L + + + I D+ + +R + +I V + ++ D+ Sbjct: 269 ---LKDYQELVVRSFQIA-HTDVKQMVAMVRGIVKAKDIYVNEQLNLFIMR-------DT 317 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR--DILKQIGF 215 A+ L+E +S LN E +V L V I E+ R L F Sbjct: 318 LEAIRLTERIVS------------------LNDLAEPEVVLDVAILEISRANTFLLGPNF 359 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAE 274 S+ + +G + GG + F++ G+ + E + + + LA Sbjct: 360 PQSLQFNYAGNA------VGGAPAALISQFNMPGLKSFGMTSEAKIDFMHNLSIGDVLAN 413 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-----TTHDYGVVLHFTPTVLSPGRIG 329 P + + + A G + + T + G S+ T D GV L P + S + Sbjct: 414 PRIRVANREKAKIHVGEKRPFFTANVQPGINSIVTSTPTFIDLGVKLDVEPRIGSNNDVT 473 Query: 330 LRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 ++I EVS V+ P R A+T + + G T VLAGL++D +G+ Sbjct: 474 MKITLEVSSSTQNVSGPGGATAPLVVTRNAETLLTVKDGETQVLAGLIQDSDTTNVKGLA 533 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 L IP L LF N R + E+ + TP +V+ + + H+ +A Sbjct: 534 GLLNIPGLDRLFSNQDVRRSKNEVVLLITPRIVRNLPNPTNQENEYHFGTASEA 587 >gi|291333680|gb|ADD93369.1| type II and III secretion system protein [uncultured marine bacterium MedDCM-OCT-S01-C143] Length = 437 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 61/298 (20%), Positives = 108/298 (36%), Gaps = 58/298 (19%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------SITGSSSGPSKSF 230 S ++++ L++ QV ++ I EV Q G I G SG + Sbjct: 28 SMRRLIEKLDVP-RTQVYVEAAILEVTVTDKGQRGLDWHSPFGVSDSGIGGVDSGSVGNL 86 Query: 231 ----------------------------AADFGGKFVSEGGDFSVK-GVLDRFSFETVLH 261 A G V EG + L +F +L Sbjct: 87 GFIQSATSSGGVSPTLGALAAPESLLTVAGGSLGGIVGEGVSIPIGDSTLTLPAFGVILK 146 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------------------ST 302 LE ++ L+ P + + AS G + ++ +S + Sbjct: 147 WLETSSTANILSTPHILTTDNEEASIEVGQKIPFRRGTSIPAAAGALGGLGGGSLGGLGS 206 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 +S D + L TP V ++ L I ++ + A P R A T V + Sbjct: 207 LFSSTDRIDVSLKLTLTPHVNERNKVRLDIDQQIEDVAGIDEATGQPITAKRSAKTVVVV 266 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 TIVL GL++D + + + IP+L +P++G +FR + E+ + + TP++V+ Sbjct: 267 DDQQTIVLGGLIRDRVSEGESKIPVLGDLPLIGWMFRQHTKDVEKVNLLLVLTPYVVR 324 >gi|332295419|ref|YP_004437342.1| type II and III secretion system protein [Thermodesulfobium narugense DSM 14796] gi|332178522|gb|AEE14211.1| type II and III secretion system protein [Thermodesulfobium narugense DSM 14796] Length = 630 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 100/233 (42%), Gaps = 12/233 (5%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ ++V + E+ +KQ+G Q SG + G + S Sbjct: 402 KQIEVQVMVIELDNQGIKQLGIQWPNNIQFSGNAT------GTRTYGTSKSKSSVYTGTI 455 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---SVTTH 310 + L+A + L++P + A+ GQ + +G + VSS+TG + + Sbjct: 456 SNITASLYAQLNNNNAKILSDPRILALDGQDSYVFAGDKLYIPQVSSATGGNVTYTTNEY 515 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D GV+L TP + G I + + VS V + + +R+AD T + G T Sbjct: 516 DVGVLLKITPFIGENGEITIHVTPSVSAFNGDVTQLQINQPFTTTIREADVTARVKDGQT 575 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + GL+ D+ ++ +P L +P+LG +FR + TE+ TP +VK Sbjct: 576 FYIGGLISDEQRKQTISVPGLGNMPLLGPMFRYDYNMKSRTEVIFLLTPHIVK 628 >gi|226944981|ref|YP_002800054.1| type II and III secretion system protein [Azotobacter vinelandii DJ] gi|226719908|gb|ACO79079.1| type II and III secretion system protein [Azotobacter vinelandii DJ] Length = 614 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 64/278 (23%), Positives = 113/278 (40%), Gaps = 17/278 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +V L++ + EV R + +G Q T + A G+ D Sbjct: 334 PEVVLELEVMEVSRKRILDLGLQWPNTFGILAEDGTSAVSILGQLRGIDSD------RIN 387 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SV 307 FS L + + TLA P L + + A G + + +S+ ++ Sbjct: 388 FSPSPTLKINANDSDVNTLASPVLRVSNREQARIHIGERVPVVSATSTPSTQGPVITENI 447 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPS-YRVRKADTTVELPS 364 T D G+ L PT+ + +++ EVS AG +P R A TT+ L + Sbjct: 448 TYLDVGLKLEVEPTIHLNDEVAIKVGLEVSNATQLTRTEAGTIPIQVDTRNAVTTLRLRN 507 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T VLAGL+++D + + IP L IP +G LF +++ ++E+ ++ TP +V+ + Sbjct: 508 GETQVLAGLMRNDQGKSGDRIPGLGDIPGIGRLFGSNKDTLSKSELVLSITPRIVRNLPY 567 Query: 425 RDLSRPDDHYSVEDDAKA--FFFNRVNKIYGPKEASEV 460 ++ + E + R +ASE Sbjct: 568 QNPYDMEFESGTESSLRLRPAALPRKAGAALRGQASEP 605 >gi|83858602|ref|ZP_00952124.1| general secretion proteinD [Oceanicaulis alexandrii HTCC2633] gi|83853425|gb|EAP91277.1| general secretion proteinD [Oceanicaulis alexandrii HTCC2633] Length = 658 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 118/284 (41%), Gaps = 13/284 (4%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 +D + + + + S + ++ LL+ QV+++ I V + Sbjct: 360 NDEDRLQISAVPSQNKIIARGPEARISEVRDLVELLDQP-RAQVSIEAAIISVSLQDEFR 418 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 G S FA + G S FS + E L+ L+ T I + Sbjct: 419 FGVNWGAAPSEQ-IDVRFADNADGTAASVFPGFSATYL--NTDIEATLNMLDAVTEIEVI 475 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSP 325 + P + A+ Q A G Q T S+ + D GV+L TP V + Sbjct: 476 SRPNVMALHNQQAELQVGDQVPVITQSAVSVTNPDAPIVNQTAYRDTGVILSVTPHVRAG 535 Query: 326 GRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G + + I EVS V ++G D P+ R R+ +T+ +PSG ++ L GL+ + G Sbjct: 536 GIVEIDITQEVSSVVQTSSSGIDSPTIRQRRITSTLLVPSGQSVALGGLIATTRTTNERG 595 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDL 427 +P+L ++P++G +F + + + TE+ I P ++ P D+ Sbjct: 596 VPVLRELPVVGRVFGSDSESVDRTELVILLKPTVITDPSQPSDV 639 >gi|283955079|ref|ZP_06372582.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 414] gi|283793446|gb|EFC32212.1| general secretory pathway protein D [Campylobacter jejuni subsp. jejuni 414] Length = 470 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 67/299 (22%), Positives = 119/299 (39%), Gaps = 18/299 (6%) Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 V+L + + + + +G N S K + L + QV + V+I Sbjct: 165 VLLKNSHEDYEAKTPIINSNAGIIIVTGTNSQLKSV-KNYLQKLENRLKKQVIIDVSILA 223 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V + G + S++ + + + G G+ +F+++++ L Sbjct: 224 VSLNENHSSGINWQ-NFNIGLNSQANNENSFIQLQNGQGFVKNLGLRANLNFDSIVNFLS 282 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---------HDYGVV 315 + L+ P L A++ Q A + G Y+ SS G + TT G++ Sbjct: 283 QNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESYNNYSIFVGIL 342 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-------GDMPSYRVRKADTTVELPSGGTI 368 L+ P + G+I LRI +S+ + P +K + V++ + T+ Sbjct: 343 LNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTL 402 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +L GL+ D K I LSKIPILG+LF+ + + TEI TP +V L Sbjct: 403 ILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLDSKATEIVFIITPSIVDSTNAPSL 461 >gi|192358819|ref|YP_001982858.1| MSHA biogenesis protein MshL [Cellvibrio japonicus Ueda107] gi|190684984|gb|ACE82662.1| MSHA biogenesis protein MshL [Cellvibrio japonicus Ueda107] Length = 578 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 65/288 (22%), Positives = 109/288 (37%), Gaps = 43/288 (14%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------PS 227 SS + + ++ + QV L+ I EVR + G G S Sbjct: 269 SSVRDYLERSELSAKRQVILETKILEVRLSEGFEAGVNWGAISGQLGYSYGSGRGTISAS 328 Query: 228 KSFAADFGGKF------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 S ++G F GG G++ +L LE A++ L+ P Sbjct: 329 DSLEMNYGPGFQMTDATRTITESSEYGGKDLFAGLVQVADITKLLSLLETQGAVQVLSSP 388 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLS 324 ++ ++ Q A G + T SS T+ ++ G+ L TP + Sbjct: 389 RVSTVNNQKAVIRVGYDEYFVTGISSNTTTNAAAITNTPNIELSPFFSGISLDVTPQISE 448 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLK 375 G + L I VSE + + +R++D+ V+ +G IVL GL+ Sbjct: 449 AGEVILHIHPIVSEVTDQLKVFTVGDENFSLPLALRGIRESDSIVKAANGQVIVLGGLMT 508 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 + +Q PLL IPI+ +LFR ++ +TE+ I P +V Sbjct: 509 ESNRQTDGKRPLLGDIPIVNSLFRTKNKSKSKTELVILLRPIVVDDTT 556 >gi|313680282|ref|YP_004058021.1| type II and III secretion system protein [Oceanithermus profundus DSM 14977] gi|313152997|gb|ADR36848.1| type II and III secretion system protein [Oceanithermus profundus DSM 14977] Length = 518 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 74/303 (24%), Positives = 136/303 (44%), Gaps = 12/303 (3%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L ++ A S I+VE + + + + L +G + + Sbjct: 220 LAEAMQARQAQSQIKVEAGAGEQQVQATIPEKSTISIVADTRTNTLIVTGTAKQL-ELVE 278 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ L+ QV ++V I EV + +++ +G + + S G S D G + Sbjct: 279 ELIKKLDFP-VQQVNVQVRIQEVTQTLVRNLGLKWNTI--SGGNIVSSIVDNGLSLI--- 332 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 F L + L ALE+ RT+ + +T ++ Q+ SG K V Sbjct: 333 --FDATRSLASLNIVATLEALEKQGLSRTVNDSNITVLNNQTGFIQSGFTIFVKRVVGD- 389 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVE 361 +D GV++ TP + + G+I L++++EVS+ GD+ +K++TT+ Sbjct: 390 -KVEKVPYDIGVIVRVTPQITADGQIVLKVESEVSDIKERNPVDGDVDVLSKQKSETTLR 448 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L +G T+VL GL+K + +G+P+L IP+LG+LF+ + N E+ E+ I T +V Sbjct: 449 LDNGQTVVLGGLIKTKRDKTTQGVPVLMHIPVLGSLFKQTTVNNEDNELLIVITANIVND 508 Query: 422 VAM 424 Sbjct: 509 ATA 511 >gi|307626976|gb|ADN71280.1| general secretion pathway protein D [Escherichia coli UM146] Length = 421 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 12/245 (4%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 +N +++A DQV ++ + E + F + G + GG Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298 F G+ D L A++ + + ++ P + SGQ+ + G + T Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGES 297 Query: 299 -SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 + ++ HD GV L TP V+ G++ L I T A D+ + R+ Sbjct: 298 AGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDIIT-NQRQIQ 356 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTV++ G T++L GL+ + +P++SKIP++G +F + + E+ ++I T Sbjct: 357 TTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKAXSNEQRIMYILLTAH 416 Query: 418 LVKPV 422 +++P+ Sbjct: 417 IIRPL 421 >gi|303248632|ref|ZP_07334887.1| type II and III secretion system protein [Desulfovibrio fructosovorans JJ] gi|302489982|gb|EFL49906.1| type II and III secretion system protein [Desulfovibrio fructosovorans JJ] Length = 629 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 58/305 (19%), Positives = 110/305 (36%), Gaps = 24/305 (7%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D A L + + + S +++ ++ + A + Sbjct: 313 QTDRNTAQALGVQWGGVLKGSNFRMSPAQQATTSTSMTAGNNGMTSANAASSGSTLTGSG 372 Query: 214 GFQHSITGSSS--------GPSKSFAADFGGKFVSEGGDFS--------------VKGVL 251 ++ TGSSS P S FG + + + + G + Sbjct: 373 SVSNANTGSSSLSNVTSPIFPGGSSGNGFGLNYPALTNSLTTASGLGAAGAGVNFLFGKI 432 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 E L AL ++ LA PT+T + Q+A +G Y S+S T+V + Sbjct: 433 GENVLEAQLTALAEDNKVKILASPTITTMENQTAFVENGMDVPY--TSTSQNGTNVQFAN 490 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + L P V+ + ++I + + P R+ + + + TIV++ Sbjct: 491 ATLRLEILPHVVDGTNLRMKITVKDDQVDTSRTVDGNPYIYKRETQSNLVVEDRETIVIS 550 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 GL++D + G+P L IP LG F++ + E ++ I TP ++K + + Sbjct: 551 GLVRDTVSDGNSGVPFLRDIPGLGWAFKSKNSSVEREQMLIFITPIILKEKPIAPVPPVA 610 Query: 432 DHYSV 436 D Sbjct: 611 DRVDP 615 >gi|218886129|ref|YP_002435450.1| type II and III secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757083|gb|ACL07982.1| type II and III secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 552 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 102/264 (38%), Gaps = 40/264 (15%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHS------------------------------------ 218 Q+ LK I E ++ +++G Q Sbjct: 255 QIQLKAHIVEATKETARELGIQWGGVNRVGNMAGSNDLWVTPGGTGGTAGTSPYNGSYTP 314 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEP 275 I G+ + +F + G S+ G + E L AL+ ++ I L+ P Sbjct: 315 IFGAPGISGQGNGINFPIDTTGKSGAGSLGLMFGTIGGNMLEMQLSALQESSKINILSSP 374 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +++ + Q A +G + Y +++ G V D + L TP V+ + L++ + Sbjct: 375 SISTLDNQMAYTENGEKVPY-VSTNAQGDREVKFEDAVLRLEITPHVIDDKNLKLKVLVK 433 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 E + P ++ +TT+ + G TIV++GL KD + G+P L + LG Sbjct: 434 KDEVDLTRTVEGNPFIIKKQTETTLIVQDGETIVISGLTKDRKSTGRSGVPGLHDVEGLG 493 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 LF + + E+ I TP ++ Sbjct: 494 WLFGSDSKASKLEEVLIFITPAVL 517 >gi|93006993|ref|YP_581430.1| type II and III secretion system protein [Psychrobacter cryohalolentis K5] gi|92394671|gb|ABE75946.1| type II and III secretion system protein [Psychrobacter cryohalolentis K5] Length = 792 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 106/282 (37%), Gaps = 44/282 (15%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 K++ ++I QV ++ I K+IG + I + + +++ + + + Sbjct: 514 KLIGKIDIP-VRQVMIEARIVSATDSFSKEIGVRWGILSNGAANNRNLLVGGSNQTLWDL 572 Query: 243 GDFSVKGV---------------------------------------LDRFSFETVLHAL 263 DF V+ + F + L A+ Sbjct: 573 KDFDVQTTTINGQTVSYPKYDITRPDNLNVDLGVDNPAGRIAFGLLGISDFMLDLELSAM 632 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + ++ P + Q+A +SG Q Y+ S+S GAT+ + + + L TP + Sbjct: 633 QADNRGEVISTPKILTSDKQTAKVSSGTQIPYQEASAS-GATTTSFKEAALSLEATPNIT 691 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 G+IGL++ P I + + T V + G TIVL G+ K+ + Sbjct: 692 PDGKIGLQLLITNGTPTI---INNQVAIAEDSISTNVIVEDGQTIVLGGVFKNRTNNGVD 748 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +P L +P +G FR + + E+ I TP L+ R Sbjct: 749 KVPFLGDLPYIGRAFRKDVRSNTKEELLIFITPKLINDGISR 790 >gi|103485810|ref|YP_615371.1| type II and III secretion system protein [Sphingopyxis alaskensis RB2256] gi|98975887|gb|ABF52038.1| type II and III secretion system protein [Sphingopyxis alaskensis RB2256] Length = 732 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 119/317 (37%), Gaps = 55/317 (17%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTIAEVRRDILKQIGF 215 R + + + ANS ++++ L A QV ++ + E+ D K++G Sbjct: 326 RGPAIVTRYEGANAIIVAANSEVQRMLGELIRQLDARRQQVLVEAIVVEIGDDAAKRLGV 385 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDF------------------------------ 245 Q + G + + ++ ++ GG + Sbjct: 386 QFLLGGKNIPFVATSYSNASPNILTLGGAYASTRISEETTTTDGTTVVTQTTSALGDALQ 445 Query: 246 --------SVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 S G F+ F +++A++ T LA P + + Q A F Sbjct: 446 EAAAAQLLSATGGFAGFAGDIGKNTIFGAIINAVKSDTTSNLLATPHIVTLDNQPAKFLV 505 Query: 290 GGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 G T +V + G+ L TP V G + + ++ EVS V+ Sbjct: 506 GQDVPITTGEQLGDNFENAFRTVQREEVGIKLEVTPQVNGAGEVKMFLRQEVSSVAGPVS 565 Query: 345 AGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + + R +T + + G + + GLL DD ++ E IPLLS IP++G LF++ Sbjct: 566 SRNSDLILNKRAFETVLTVDDGEILAIGGLLNDDERRTIERIPLLSDIPLIGELFKSRSR 625 Query: 404 NREETEIFIAATPFLVK 420 R +T + + P ++K Sbjct: 626 TRAKTNLMVFIRPTILK 642 >gi|88704159|ref|ZP_01101873.1| General secretion (type II) pathway protein D precursor [Congregibacter litoralis KT71] gi|88701210|gb|EAQ98315.1| General secretion (type II) pathway protein D precursor [Congregibacter litoralis KT71] Length = 745 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 54/270 (20%), Positives = 107/270 (39%), Gaps = 6/270 (2%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 + R V E + K + L++ QV ++ +I EV+ + Sbjct: 439 SPLADVRVVADEENNALMIYADGKQYGIVKDALKQLDVV-ATQVIIEASIMEVQLIDELR 497 Query: 213 IGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 G + + G + G + FS VL+AL + I Sbjct: 498 YGLEWTFKNGLGNNYDGLGTLAAGAAGPAAAAGFSYTVTNSLGDISAVLNALSEESLINV 557 Query: 272 LAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P++ + +A + G Q + ++T D GV L P+V + G Sbjct: 558 ISSPSVMVLDNHTAFISVGDQVPVLQGQTITNGGNSVQNITYRDTGVQLSVRPSVNAGGL 617 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + + I+ V + +A ++ R ++ V + S ++VL GL++++ G+P+ Sbjct: 618 VTMDIEQSVIDVGSIDSATGQRAFLDRTINSRVAVRSSESVVLGGLIRENSSLGDSGVPI 677 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPF 417 L +IP+ G+LF + + TE+ + TP Sbjct: 678 LREIPLFGSLFGTTTTDSRRTELLVIITPR 707 >gi|57238497|ref|YP_179628.1| general secretory pathway protein D [Campylobacter jejuni RM1221] gi|57167301|gb|AAW36080.1| general secretory pathway protein D [Campylobacter jejuni RM1221] Length = 470 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 17/264 (6%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S K + L + QV + V+I V + G + S+ + +F Sbjct: 199 SVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQ-NFNIGLNSQVNNENSFIQFQ 257 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G G+ +F+++++ L + L+ P L A++ Q A + G Y+ Sbjct: 258 NGQGFVKNLGLRVNLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 317 Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345 SS G + TT G++L+ P + G+I LRI +S+ + Sbjct: 318 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE 377 Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P +K + V++ + T++L GL+ D K I LSKIPILG+LF+ Sbjct: 378 PRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVL 437 Query: 404 NREETEIFIAATPFLVKPVAMRDL 427 N + TEI TP +V V L Sbjct: 438 NSKATEIVFIITPSIVDSVNAPSL 461 >gi|153870600|ref|ZP_01999967.1| MSHA biogenesis protein MshL [Beggiatoa sp. PS] gi|152072935|gb|EDN70034.1| MSHA biogenesis protein MshL [Beggiatoa sp. PS] Length = 494 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 24/243 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + QV ++ TIAEV+ + Q G I G + + G G +V L Sbjct: 249 QRQVLIEATIAEVQLNDQYQAGIDWQRIDGDFNYTQALTGGNLGNAPFYSFGYSNVASRL 308 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------- 304 + + LE+ +++ L+ P + A++ Q+A +Y T Sbjct: 309 G--NISATVRLLEQFGSVKVLSSPKIMALNNQTAILKVVDNIIYFTTEVEITETDTRTRE 366 Query: 305 ---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-----------GVNAGDMPS 350 T + T G+V+ TP + + L I+ +S + +P Sbjct: 367 TFETEINTVPVGLVMSVTPQISENNVVMLNIRPTISRIINFKVDPNPALAAAGTVNQIPE 426 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +VR+ +T +++ G V+ GL++D Q+K+G+P+LS++P++G F E+TE+ Sbjct: 427 IQVREIETILKINHGDIGVIGGLMQDTTNQIKKGVPVLSQLPLVGDFFSYRDDQYEKTEL 486 Query: 411 FIA 413 I Sbjct: 487 VIF 489 >gi|307719942|ref|YP_003891082.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] gi|306978035|gb|ADN08070.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] Length = 502 Score = 163 bits (413), Expect = 6e-38, Method: Composition-based stats. Identities = 60/266 (22%), Positives = 117/266 (43%), Gaps = 27/266 (10%) Query: 178 NSSSKKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 + + NL+ + QV ++ I EV + Q+G + G S D Sbjct: 241 KQNIDAISNLIKDVKKQFNKQVLIEAKILEVTLNKSHQLGINWDVVGKSVFS----PGDT 296 Query: 235 GGKFVSEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 S G +V G ++ +F +++A+++ I T++ P + ++GQSA +SG Sbjct: 297 LNIQQSLGLTGAVAGTVNYSANNFNALINAIDQNGNIDTISNPRIKVLNGQSAIISSGKL 356 Query: 293 HLY--------KTVSSSTGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQT-------- 334 Y + S++ + D GV + TPTV+ GRI L + Sbjct: 357 VPYWEKQVDTSQGTSTNNILVTYNRRDVLDGVTMGVTPTVMENGRIMLNVTPISSSIESE 416 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +V GV+ P +++A T + + +++ GL+ I++ K+ +P LS +P++ Sbjct: 417 KVYHDDQGVSVATAPIINIKEAGTIIYAKNNDLVLIGGLMSTSIKKNKQEVPFLSNLPLV 476 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 G+LF +E+ E+ I +++ Sbjct: 477 GSLFTQVNNTKEKKELVILLRLKVIE 502 >gi|309389153|gb|ADO77033.1| type II and III secretion system protein [Halanaerobium praevalens DSM 2228] Length = 438 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 20/241 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++ ++ + Q+ +K + E+ R +K++G PS+ +E Sbjct: 164 DQIVKKIDQP-QKQIMIKARVEEISRTEIKELGIN---------PSQLTELKI---IKNE 210 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VS 299 GD + ++ L +L LA P+L + + A G Q K V Sbjct: 211 AGDLEEL----KPNWPDTLRSLNERGLSNILANPSLMTLDRKKAKLIIGDQIPVKLERVE 266 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 S +++ + G+VL F P +++ + L I+ V+ + V A +P+ R A+TT Sbjct: 267 SEKTVSTINYIEAGIVLEFLPKIINEKEVLLEIKPSVNS-LGQVLADGLPAVNSRSAETT 325 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V L + T+ + GL+K D + + +P+L+ +P+LG LF N ETE+ I TP ++ Sbjct: 326 VILENDQTLAIGGLIKKDELKSIKEVPILADLPLLGKLFSAEEKNDIETELIIFITPKII 385 Query: 420 K 420 + Sbjct: 386 E 386 >gi|148252838|ref|YP_001237423.1| general secretion pathway protein D [Bradyrhizobium sp. BTAi1] gi|146405011|gb|ABQ33517.1| General secretion pathway protein D [Bradyrhizobium sp. BTAi1] Length = 751 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 66/311 (21%), Positives = 125/311 (40%), Gaps = 31/311 (9%) Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHS 218 V ++ ++ S S + + + L + QV + TIAEV G Q Sbjct: 435 VRITPDTVNNSLLIYADRESYRTISSTLQQLDQPVLQVGIDATIAEVTLTNELSYGVQAY 494 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFS-------VKGVLDRFSF--------ETVLHAL 263 ++ G + + S + + L F+F +L AL Sbjct: 495 LSSKVLGLGTDKGSITNTQTTSVATATTAAATSALINRALPGFNFLIGHEASPNMILDAL 554 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLH 317 T+++ L+ P+L I+ Q+A+ G T S S+T ++ + G++L Sbjct: 555 HTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGSATVLSSSNTVVNTIDYRNTGIILR 614 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + + G + L ++ E+S A P+ RK + + + +G T++LAGL+ + Sbjct: 615 VVPRIAANGNVRLEVEQEISNVAAQSAASLTPTVSQRKVKSAISVANGQTVLLAGLISEQ 674 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + GIP +IPILG F + TE+ I P +++ + D + V Sbjct: 675 QNGNRNGIPGFDEIPILGDTFSHQDKKGTRTELIIFIRPQIIRDGS--------DAHQVA 726 Query: 438 DDAKAFFFNRV 448 ++ ++ V Sbjct: 727 EELRSKLRGSV 737 >gi|42524677|ref|NP_970057.1| flp pilus assembly protein [Bdellovibrio bacteriovorus HD100] gi|39576887|emb|CAE78116.1| flp pilus assembly protein [Bdellovibrio bacteriovorus HD100] Length = 433 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 79/402 (19%), Positives = 149/402 (37%), Gaps = 39/402 (9%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + +GL + + + V + D R + L G+ G V + G + Sbjct: 21 LVLGLGEQKTVPLQGQ-DRVWIQDREILTAEGQGGR-LLLVGRREGFTTVKV----GAVL 74 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD----SQRAVELSE 165 ++ +L + + + +++ G + +QD + + Sbjct: 75 YSVQVLHPSKKDSFQDLTTYLKTRVGLHASLKEGDLLIEGQLYRLQDWIHLADHMRTKNL 134 Query: 166 TFLSQSGRNQYANSSSKKVMNLL--NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 + ++ +++ + L Q + EVR Q ++S Sbjct: 135 NYQMRARMTASLQQLAQEHFSNLFYKAHLPPQTLIFEPALEVRVSGTDQTFRKYSRLLMP 194 Query: 224 SGPS------------------------KSFAADFGGKFVSE-GGDFSVKGVLDRFSFET 258 G S K F+ +G + + GV +R Sbjct: 195 FGVSLLKDETSLDIAPTIKVQITVAEIKKDFSLKYGLRPPAGYSAKLMPDGVWERDELPF 254 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 L ALE + LA P + SG+ A F +GG+ K ++ + YG++L Sbjct: 255 NLTALEAQGQGKILASPNILCRSGKEAEFLAGGEFPIKIMNYKM--QDIVWKRYGILLRV 312 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + GR+ + I+TEVS D+P + + +L TI L+GLLK + Sbjct: 313 KPKADAAGRMSISIETEVSTVDDSRKVDDVPGILTNRVSSHFDLTRPQTIALSGLLKSED 372 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + EG+PLLS++P++GALF + F +E+ I P +++ Sbjct: 373 GKSSEGLPLLSRLPVVGALFASKDFKENRSELVIFVRPSILR 414 >gi|254522174|ref|ZP_05134229.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14] gi|219719765|gb|EED38290.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14] Length = 638 Score = 163 bits (412), Expect = 7e-38, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 109/287 (37%), Gaps = 12/287 (4%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI-----AGEDQVTLKV 200 V+ V + R V ++TF + G + S V ++ + Q Sbjct: 347 VIDRPVDQVLIESRIVIATDTFARELGAKFGISGSRDNVYFSGDLESNRKTRQSQADTSA 406 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 A+ RD + ++ + + G ++ + + + L Sbjct: 407 ANAKAYRDWEAGGSVGPAPVPLLPAITRGLNFNLPAASTATPGSLALSILNAGYLLDVEL 466 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVL 316 A++ ++ P + + + A G + Y T+S +V + + L Sbjct: 467 SAMQEEARGEVISNPRVVTTNQREALIKQGKEIGYVTISGGGTGGVATPNVQFKEVVLEL 526 Query: 317 HFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 TPT+ + R+ L +Q + E + G +P R+ +T V + G T+V+ G+ Sbjct: 527 KVTPTITNDNRVFLNMQLKKDEVERLIQLQGYGTVPEINRREVNTAVLVDDGQTVVIGGV 586 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +P L +P LG LF+ ++++ E+ + TP +++ Sbjct: 587 YEFTDRSSVSKVPFLGDVPFLGNLFKKRGRSKDKAELLVFVTPKVLR 633 >gi|88797633|ref|ZP_01113222.1| type 4 fimbrial biogenesis protein PilQ [Reinekea sp. MED297] gi|88779805|gb|EAR10991.1| type 4 fimbrial biogenesis protein PilQ [Reinekea sp. MED297] Length = 709 Score = 163 bits (412), Expect = 7e-38, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 96/254 (37%), Gaps = 37/254 (14%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS------------------------ITGSSSGPSKS 229 +QV ++ I R + Q+G + I G S P + Sbjct: 460 EQVLIEARIVSARTSVGDQLGVRWGGAIFPSQNVFATGTVESSASIESDIYGGSPNPDLT 519 Query: 230 FAADFGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 F F + G S L + + + ALE +++P + GQ+AS Sbjct: 520 FPDAFAVNLPATGNASSFAVGLIADNLLDLDLEISALESLGEAEVVSQPKIVTSDGQAAS 579 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 SG + T + G+ L+ TP V ++ L + G A Sbjct: 580 IFSGQNVAFPAEDGGT-----QFIEAGLNLNVTPQVTPDDKVILTLTVNQDSLAAGGGA- 633 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 T V + +G T+VL G+ + + QL E P+L +P++G LF+ + + E Sbjct: 634 ----IDTNTVSTQVLVENGVTLVLGGVYRTEKTQLVEKAPILGDLPVVGNLFKRTTTSDE 689 Query: 407 ETEIFIAATPFLVK 420 +E+ I TP L++ Sbjct: 690 RSELLIFITPKLIQ 703 >gi|205356095|ref|ZP_03222862.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205345938|gb|EDZ32574.1| putative type II protein secretion system D protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 470 Score = 163 bits (412), Expect = 7e-38, Method: Composition-based stats. Identities = 66/265 (24%), Positives = 108/265 (40%), Gaps = 19/265 (7%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S K + L + QV + V+I V + G + G + + Sbjct: 199 SVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINW--QNFNIGLNSQVNNENSFIQF 256 Query: 240 SEGGDFSVK-GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G F G+ +F+++++ L + L+ P L A++ Q A + G Y+ Sbjct: 257 QNGQSFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVK 316 Query: 299 SSSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---- 345 SS G + TT G++L+ P + G+I LRI +S+ + Sbjct: 317 ESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQK 376 Query: 346 ---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 P +K + V++ + T++L GL+ D K I LSKIPILG+LF+ Sbjct: 377 EPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEV 436 Query: 403 FNREETEIFIAATPFLVKPVAMRDL 427 N + TEI TP +V V L Sbjct: 437 LNSKATEIVFIITPSIVDSVNAPSL 461 >gi|149376650|ref|ZP_01894409.1| Type II secretory pathway, component PulD [Marinobacter algicola DG893] gi|149359023|gb|EDM47488.1| Type II secretory pathway, component PulD [Marinobacter algicola DG893] Length = 578 Score = 163 bits (412), Expect = 7e-38, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 116/288 (40%), Gaps = 35/288 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADF 234 ++ + + + QV L+ I E+ + Q G S+T S P A Sbjct: 273 EEYLRRTQLIMQRQVVLEAKILEIGLNEGYQQGINWADIQSASSVTASDGLPEDFTAQAL 332 Query: 235 GGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G+ ++ GG FS + F ++ L ++ L+ P ++ ++ Q A G Sbjct: 333 AGQVITTSDIGGLFSAS--VRAGDFTGLIELLGEQGNVQILSSPRISTVNNQKAVIKVGT 390 Query: 292 QHLYKT-----------VSSSTGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSE 338 + T ++ +TSV + G+ L TP + G I L + VSE Sbjct: 391 DEFFVTDIDFDDNNSAVTATDRTSTSVELTPFFSGISLDVTPQISEDGAITLHVHPSVSE 450 Query: 339 P-------VIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 +G +P VR+ D+ + SG +V+ GL+++ + +P S Sbjct: 451 VNDQKKVITVGDRDVTLPLALSTVRETDSVIRAESGQIVVIGGLIQNTSEDNNSAVPFFS 510 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSV 436 +IP+LG LF+ RF ++E+ I P + M D+S D V Sbjct: 511 EIPLLGELFKQRRFQSRKSELVILLRPVVAGSQQMNADVSASRDRMRV 558 >gi|251772573|gb|EES53138.1| putative general secretion pathway protein D [Leptospirillum ferrodiazotrophum] Length = 565 Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 9/190 (4%) Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 V GG F GV + + +L+ALE + +RTL+ P + A G A T G + T Sbjct: 320 VLTGGTFKYNGV-NYPNIGELLNALETYSDVRTLSTPEILATDGVKAKITIGEDVPFITG 378 Query: 299 SSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PS 350 S T T + + G+ L TP +LS R+ L ++ +S P+ Sbjct: 379 QSQTVGGNVMTMIQRQNVGITLELTPHILSHNRVRLDVKQTISALTNASQVIGTIAVGPT 438 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R A T + + SG T+V+ GL+ + +GIP LS IPILG LF N+ ++ ++ Sbjct: 439 TTKRSAKTNLTISSGQTVVIGGLISKETSINDQGIPFLSDIPILGYLFSNTNNEKKRDDL 498 Query: 411 FIAATPFLVK 420 I TP++++ Sbjct: 499 LIFLTPYVIR 508 >gi|297537339|ref|YP_003673108.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301] gi|297256686|gb|ADI28531.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301] Length = 608 Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats. Identities = 57/293 (19%), Positives = 119/293 (40%), Gaps = 34/293 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----AADFGGK 237 ++ ++ + + + QV ++ TI EV + + G S GS F G Sbjct: 303 QEFIDKVMGSAKKQVLIEATIVEVTLNDGYKAGIDWSRLGSLGSAGFVFKQALGPQLGAV 362 Query: 238 FVSEGGDFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + S G++ ++ + + LE+ + L+ P L ++ Q+A Sbjct: 363 NSAANVTLSSSGIIAGYTNGNRGILSSVQLLEQFGNTKVLSSPKLMVLNNQTAVLKVVDN 422 Query: 293 HLYKTVSSS--------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS- 337 +Y TV S + T+ T GVV+ TP + G + + ++ ++ Sbjct: 423 LVYFTVQSQISQSASGVAGTNLQSVTTTPNTVPVGVVMSVTPQINDTGNVNINVRPTITS 482 Query: 338 ----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + + +P R R+ ++ +++ SG VL GL++D+I+ E +P Sbjct: 483 LIRYVPDPNPQIQKSPDFQGIPEIRTREMESLLQISSGNIAVLGGLMQDEIKNSTEAVPG 542 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 LSK+P +G +F+ + ++TE+ I P ++ ++ + A Sbjct: 543 LSKVPGVGKVFQGKNDSNQKTELVIFLRPTVIPNASLESDELAHYKQYLPTQA 595 >gi|325295622|ref|YP_004282136.1| type II and III secretion system protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066070|gb|ADY74077.1| type II and III secretion system protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 506 Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 113/267 (42%), Gaps = 32/267 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--GPSKSFAADFGGKFV 239 K+ ++ +N + QV ++ I EV+ D ++G S+ G + Sbjct: 238 KEFIDTINGISDRQVLIEAKIVEVKLDKRNELGINWKYLTFSNFLGSGGEYNTISFNSGA 297 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----- 294 EG F + V +F +L L + + L+ P + A++GQ A G +L Sbjct: 298 PEGKPFQLSIVKVNNTFSGLLGILSQFGKVNVLSSPRILAMNGQPAMIKVGRDYLAIYRT 357 Query: 295 -------------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--- 338 + S+ T GVVL P + G I L I +S Sbjct: 358 QTTSTTSTSSQTATTLTTEEVTTNSILTE--GVVLTIIPKIDDKGNIILNISPAISSLDS 415 Query: 339 PVIGVNAGDMPSY-------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 P+I + G+ + +R+ +T V + +G T++L GL+ + KEG+P+L I Sbjct: 416 PLITGSTGETTDFINKVYSVNIRQLNTVVRVKNGQTVILGGLIAKSKSKEKEGVPILQDI 475 Query: 392 PILGALFRNSRFNREETEIFIAATPFL 418 P+LG F+++ +TE+ I TP++ Sbjct: 476 PLLGNAFKSTSTISSKTELVIMLTPYV 502 >gi|298529582|ref|ZP_07016985.1| type IV pilus secretin PilQ [Desulfonatronospira thiodismutans ASO3-1] gi|298511018|gb|EFI34921.1| type IV pilus secretin PilQ [Desulfonatronospira thiodismutans ASO3-1] Length = 569 Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 13/241 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 ++++ L+ E QV ++ + +++G S G + + F S+ Sbjct: 336 QLIDNLD-RPERQVLIEARVVYATESFRRELGVDWGFAYQSPGLDSNIISPDTFNFPSDL 394 Query: 243 GDFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 G + E L E T++ P + ++ Q A G Sbjct: 395 EGLLGVGYMGHEGQSFSVLEARLRLGESQGKSNTISAPQIMTLNNQEAKIEQGTDVAVDV 454 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 + + T + L TP + + L ++ + P G N V+KA+ Sbjct: 455 IDADL-RTRREYVPATLELIVTPQITPDNNLILNLEVSDNAPGEGGN------IEVKKAE 507 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TT+ G TIV+ G+ K Q + GIP LS++PILG LF++ E+ I P Sbjct: 508 TTLFAEDGETIVIGGIKKLSESQRETGIPPLSRLPILGWLFKHELVEENMDELLIFIRPK 567 Query: 418 L 418 + Sbjct: 568 I 568 >gi|288818586|ref|YP_003432934.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] gi|288787986|dbj|BAI69733.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] gi|308752177|gb|ADO45660.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] Length = 665 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 26/292 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAADF 234 K ++ +++ QV L T+ E+ IG + I G+ G S + A Sbjct: 370 KSLIEKMDVR-RKQVLLAATVVEMSTSKALDIGVKWQIIGTQGGVSLGGGSLQDVYNAIL 428 Query: 235 GGKFV-----SEGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G F+ + G ++ G L + LE + ++ P + + Q+A Sbjct: 429 SGNFIMGVLSTAGRTVTIGGTQLFFPDLLLLFSLLESGSGFNIVSNPKVLTLDNQTAEIK 488 Query: 289 SGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVS--EP 339 G Y + + + + G+ L TPT+ +I L++Q V P Sbjct: 489 VGQVVPYASGVKFDINGMPVITYDYKEVGLDLGVTPTISGKDLRLQINLKLQDIVDYIRP 548 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 IG + +P R+ ++ V + +G TI++ GL+ +G+P L IP LG +FR Sbjct: 549 QIGTLSYAVPVTSNRQVNSDVVVENGQTIIIGGLVNTKTLTSTQGVPGLKDIPGLGRIFR 608 Query: 400 NSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 ++ +FI TP+++ KP + +++R H + ++ K R K Sbjct: 609 RDTKTEDKVSLFIFLTPYVIEKPEELSEITR--QHQKMAEELKKLIEEREKK 658 >gi|157163858|ref|YP_001466818.1| PP family ATPase [Campylobacter concisus 13826] gi|157101371|gb|EAT98651.2| type II and III secretion system protein [Campylobacter concisus 13826] Length = 508 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 116/270 (42%), Gaps = 31/270 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSSSGPSKSFAAD 233 +K + + + QV + V+I V + + G S G+ + S+A+ Sbjct: 217 EKYIAEMQRRLKKQVIIDVSIIAVDLNNEYKQGVDWSKFELGFNSYIGNPGSSTSSYASW 276 Query: 234 FG-GKFVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G +S+G ++ + FS + +++ LE + ++ P +T ++ Q A + G Sbjct: 277 TNKGNSLSDGFGRTLNIAANLNFSLDGMINFLETNGKTKVVSSPKVTTLNNQQALISVGD 336 Query: 292 QHLYKTVSSSTGAT--------SVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEP 339 Y+ + + + + T Y G++L+ P V +I LRI +S Sbjct: 337 NINYRVMEETDNGSNNNNNNRLTTTYKQYSVFIGILLNLLPEVSDNNKIMLRINPSLSSF 396 Query: 340 VIGVNAGDMPSYRVRKA---------DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + + +R+ T V++ SG TI+L GL+ + +PLL+ Sbjct: 397 KYAEDDTRSQNTAIREIAPDTVQKKLSTVVQVNSGDTIILGGLIGQTKDKQNTAVPLLAD 456 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420 IP++G++F+++R TE+ TP +V Sbjct: 457 IPLIGSVFKSTRDGVRTTELIFVITPRVVD 486 >gi|262273424|ref|ZP_06051238.1| type IV pilus biogenesis protein PilQ [Grimontia hollisae CIP 101886] gi|262222402|gb|EEY73713.1| type IV pilus biogenesis protein PilQ [Grimontia hollisae CIP 101886] Length = 578 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 103/270 (38%), Gaps = 34/270 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 K +++ L+I DQV ++ I V L +IG + + + + Sbjct: 309 KSLIDSLDIP-VDQVEIEARIVTVDEGTLDEIGVRWGLNSQNGNFTMGGSIEGNWQHSDR 367 Query: 230 -----------------FAADFGG-KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 + G + FSV + + L AL+ + Sbjct: 368 IDVGADNEPDELMLDDLLNVNLGAISPNATSIAFSVANLGKDLLLDLELSALQAESRAEI 427 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 ++ P L + + A G + Y SSS A + + L TP + ++ L Sbjct: 428 ISSPRLLTTNKRPAYIEQGTELPYLEASSSGAAAV-SFKKAVLSLSVTPQITPDNKLVLD 486 Query: 332 IQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 +Q +P V AG + ++ T V + G T+VL G+ + ++ + + IPLL Sbjct: 487 LQVTQDKPAGTVKAGTGEAMAINTQRIGTQVLVNDGETVVLGGIYQHEMMEGVDKIPLLG 546 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP LG LFR + + E+ I TP ++ Sbjct: 547 DIPGLGQLFRRNYETTGKRELLIFVTPRVM 576 >gi|258593213|emb|CBE69552.1| exported protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 726 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 107/255 (41%), Gaps = 18/255 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADF 234 + + L+I QV +++ +A++ + ++ GP+ + A F Sbjct: 425 EATIKQLDIV-PKQVLIELMLAQITLSDAFDFSLEQVLRSGTIMLSSVHGGPAAAAIAAF 483 Query: 235 -GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 V+ F+ +D+ F VL+ L T + LA P L + + A+ G + Sbjct: 484 KNPSGVAPPSGFTFTTFVDKEQFRLVLNNLASVTKVEVLANPHLLTANNKEANIQIGQEV 543 Query: 294 LYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T + S G + + D G++L P V + L I+TE + V Sbjct: 544 PIPTGTQSVGTSDVANVFSTFQRKDIGIILKIKPHVNEKRLVTLDIETENTSVAGEVPDA 603 Query: 347 --DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 S+ T + + ++V+ G+++ D + GIP LS IP+LG LFRN+ + Sbjct: 604 LQGGASFNKTTTKTALVVQDSQSLVIGGIIRTDKSKGYSGIPFLSTIPLLGYLFRNTSED 663 Query: 405 REETEIFIAATPFLV 419 TE+ I TP ++ Sbjct: 664 LIRTELVILITPHVI 678 >gi|154249944|ref|YP_001410769.1| type II and III secretion system protein [Fervidobacterium nodosum Rt17-B1] gi|154153880|gb|ABS61112.1| type II and III secretion system protein [Fervidobacterium nodosum Rt17-B1] Length = 1519 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 11/247 (4%) Query: 185 MNLL--NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +N L V++ I + R+ + + S + Sbjct: 1269 INKLIEKFTTPKIVSIDARIIDESRNGSLSEEIVTLLKAGNYLTFGSNGLTLNVSLLDIL 1328 Query: 243 GDFSVKGVLDRFSFETVLHALER-------ATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + +L+ L E+ + + LA P + SG+ A G Sbjct: 1329 DGSIIDKILNEAGISLDLRGAEQGTPFRATSGIGKLLANPNIMTKSGEEARIFIGDSIPL 1388 Query: 296 KTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 K VS+S G T+ V + + G+ L P V + I L I T VS V +P Sbjct: 1389 KIVSTSGGQTNEQVISLEGGIELKIVPYVNADNTIDLVITTSVSNFDYSVLVNGLPKINK 1448 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R A T + + G T+V+ GL +++ + + +P+L IPILG LFR ++ E+ I I Sbjct: 1449 RDASTKITIKDGQTLVIGGLSREEKSKSEWKVPILGDIPILGYLFRGTKEASEQRSITIF 1508 Query: 414 ATPFLVK 420 T +V Sbjct: 1509 LTAKIVD 1515 >gi|253996576|ref|YP_003048640.1| type II and III secretion system protein [Methylotenera mobilis JLW8] gi|253983255|gb|ACT48113.1| type II and III secretion system protein [Methylotenera mobilis JLW8] Length = 583 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 81/396 (20%), Positives = 141/396 (35%), Gaps = 65/396 (16%) Query: 88 YLFGKNVGQANVILI----------GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 Y+ G+ G +++ + G + +I+ R S+I Sbjct: 161 YIVGQRKGASDIRVTSGSISGGSQNNQQGANSTGATSQVSNNISG-GANNNRTFTSSSIN 219 Query: 138 VEMVSD-----TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 +D T L+G+V + V L + + + +NL+ ++ Sbjct: 220 TTSNNDFWRDLTESLNGIVGNENGRRVIVNLQSGVIVVRAMPNEIRNV-ESFLNLMQVSI 278 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITG------------------SSSGPSKSFAADF 234 E QV L+ I V+ + Q G S+ G SSSG + D Sbjct: 279 ERQVILEAKILNVQLNDQSQSGVNWSVFGRSGSNTGIVGNINANTRLSSSGNGNLVSGDL 338 Query: 235 G---GKFVSEGGDFSVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 G +S ++ G L +F T+L LE ++ L+ P +++I+ Q A Sbjct: 339 TASTGTVLSNAATTALGGPLFAIALQGANFSTLLSFLETQGDVQVLSSPRISSINNQKAV 398 Query: 287 FTSGGQHLYKTVSSSTGATSV-----------TTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 G + T SS SV G+ L TP + I L + Sbjct: 399 LKVGTDEFFVTGISSNTTASVGATTTVPEVILQPFFSGITLDVTPQIDKDDNIILHMHPS 458 Query: 336 VSEPVI-------GVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +S+ G AG + S + + D+ V G IV+ GL+ + K Sbjct: 459 ISQVSTVNKQVTLGGTAGQINLPLASSNISETDSIVRTRDGRVIVIGGLMTESASSTKSK 518 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P L + +GA FR ++ +TE+ I +V+ Sbjct: 519 VPGLGDVKGVGAAFRQQSASKTKTELVILLKASVVQ 554 >gi|114797223|ref|YP_760566.1| general secretion pathway protein D [Hyphomonas neptunium ATCC 15444] gi|114737397|gb|ABI75522.1| general secretion pathway protein D [Hyphomonas neptunium ATCC 15444] Length = 653 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 103/282 (36%), Gaps = 39/282 (13%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFA----- 231 + ++V+ L++ QV ++ I E+ D +++G Q + G+ S +F+ Sbjct: 323 AMERVVTALDVRRP-QVMVEAIIVEMSDDAARELGLQFLLAGTGGDVPFASTNFSRAAPN 381 Query: 232 ------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 A S G G F +L+A+E T Sbjct: 382 LLALTGALVTDAFEDPAAENPFREAAISSLTGSSGLTLGFGGTSGDNLFGVILNAVEDDT 441 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTV 322 A R L+ P ++ +++ G + T +S +V D G+ L TP + Sbjct: 442 ASRILSTPFGMTLNNATSALIVGQEIPVTTGQVLGEANSNPFRTVERKDIGIQLEVTPRI 501 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + L I+ EVS V R+ +V G IVL GL++ Sbjct: 502 GENDTVRLDIRQEVSSVFGSVGTVTPDLILDKREIRASVLADDGEIIVLGGLVEQTDTLR 561 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +P+L IP +G LFR+ + + P +V+ A Sbjct: 562 DTKVPVLGDIPGVGRLFRSEGKAATRRNLMVFIRPTIVRNKA 603 >gi|53802350|ref|YP_112861.1| fimbrial assembly protein PilQ [Methylococcus capsulatus str. Bath] gi|53756111|gb|AAU90402.1| fimbrial assembly protein PilQ [Methylococcus capsulatus str. Bath] Length = 729 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 54/295 (18%), Positives = 111/295 (37%), Gaps = 28/295 (9%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVM-----NLLNIAG--------EDQVTLKVTIA 203 S A +++++ LS G +++ ++ NL I QV ++ + Sbjct: 434 STEAYDVTQSILSSRGNVTTDPRTNQLIVQDTPRNLERIRDLVRQLDKPVRQVMIESRVV 493 Query: 204 EVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGG-----KFVSEGGDFSVKGVLDR 253 D L+++G + ++T + AD G +S G + Sbjct: 494 IANVDFLRELGAKLDFRPKNLTAAERLNPTGSMADLGVDLAKLTTLSPYGTAQYVVSMGD 553 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTT 309 + + L A ++ +A P + A G + Y+ TG +V Sbjct: 554 YLLDLELSAAQKEGRGEIVANPRVLTADQSKAKIMQGVELPYQITQQGTGGGIPVQNVAF 613 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + L TP + I + + + + G+ + R+ DT ++ +G T+V Sbjct: 614 KPAVLELDVTPHITPDDHILMDLMVKKDDKGELAPNGNF-AIEKREIDTVAQVANGETVV 672 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 L G+ + + + +P +P +G +FR + + E+ I TP +VK +M Sbjct: 673 LGGVYEGTRRNNTDKVPFFGDLPGIGFMFRRNAVEDRKKELLIFITPKIVKQTSM 727 >gi|313199856|ref|YP_004038514.1| pilus (msha type) biogenesis protein mshl [Methylovorus sp. MP688] gi|312439172|gb|ADQ83278.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. MP688] Length = 603 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 66/313 (21%), Positives = 126/313 (40%), Gaps = 34/313 (10%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + + ET + + ++ ++ + + QV ++ +I EV + Q G Sbjct: 282 AATVIASPETGVISVRATSRQHEKVQEFLDKVMASARRQVLIEASIVEVTLNDTYQAGID 341 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------SFETVLHALERATAI 269 + G + S VS G + G + F L L++ Sbjct: 342 WTRLGGGFNINGSLGTT---GIVSPSGVAAAAGSVSPFVVGYSSNDISLGLRLLQQFGNT 398 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVT-------THDYGVVL 316 + L+ P L ++ Q+A +Y T+ S +TG+T++ T GVV+ Sbjct: 399 KVLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGLTTGSTNLQSVTTTPNTVPVGVVM 458 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPSG 365 TP + G++ + ++ +S V VN + +P +VR+ ++ + + SG Sbjct: 459 SVTPQINDLGQVNINVRPTISRVVSYVNDPNPQLANANVISRIPQIQVRELESVLRVNSG 518 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T VL GL++D+IQQ + +P +SKIP G LF +TE+ I P +++ + Sbjct: 519 NTAVLGGLMQDNIQQASDRVPEVSKIPFFGKLFTARSDFTIKTELVIFLRPIVIQNATLE 578 Query: 426 DLSRPDDHYSVED 438 + Sbjct: 579 SEELQSYKQYLPS 591 >gi|74316224|ref|YP_313964.1| type IV pilus assembly protein PilQ [Thiobacillus denitrificans ATCC 25259] gi|74055719|gb|AAZ96159.1| type IV pilus assembly protein PilQ [Thiobacillus denitrificans ATCC 25259] Length = 745 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 100/267 (37%), Gaps = 30/267 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKS 229 + ++ L++ QV ++ + +++G + G + S S Sbjct: 475 RGLLARLDVP-ARQVMIEARVVIADSLWSRELGVRLGTRLFKATGRDNIGVGGTLNESAS 533 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE------------RATAIRTLAEPTL 277 AA G V+ + G ++L+A + L+ P + Sbjct: 534 IAAG-GTPTVTPQVELGTVGAAAGQIAMSLLNASNGNLLSLELSALEADNRGKILSNPRV 592 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + + A +G Q + T ++ +VT D + L P +L+ + + I+ + Sbjct: 593 MTSNQKPAVILNGTQIPFITPGTANSPATVTFKDAFLCLLVDPQILNNDALIMTIEVQKD 652 Query: 338 EPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 A P+ R+ T V + +G T+VL G+ + +P L +P Sbjct: 653 AIDTANAAVGADIIAPAIATRRIKTQVRVNNGETLVLGGIFDQTEFNNVDKVPFLGDVPG 712 Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420 LG LF+ + ++TE+ + TP ++ Sbjct: 713 LGNLFKRTNKQDQKTEMIVFITPRILD 739 >gi|254000203|ref|YP_003052266.1| type IV pilus secretin PilQ [Methylovorus sp. SIP3-4] gi|253986882|gb|ACT51739.1| type IV pilus secretin PilQ [Methylovorus sp. SIP3-4] Length = 714 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 66/342 (19%), Positives = 117/342 (34%), Gaps = 63/342 (18%) Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 +L+ + D ++ + VL T+ A L E ++ Sbjct: 387 AESLKNILTDEKQKILSKRGSAVLDPRTNTVFVQDTAKHLEEI---------------QQ 431 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++N +I QV ++ + K +G + +T S+ G + Sbjct: 432 IINKTDIP-VKQVMIESRLVIADEKFGKSLGARFGMTQQSADGRNVIGGTLGNRITEVSS 490 Query: 244 DFSVK---------------------GVLDRFSFETVLHA-------------------- 262 D ++ G D S V +A Sbjct: 491 DGTITQGTHNGTIQTATTGSTATSSDGEPDLMSNLPVSNAYGNLAFTLLRLPAGLLLNLE 550 Query: 263 ---LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 LE + ++ P +T + + A G + Y SSS GATSV D + L T Sbjct: 551 LSALETDKRGKVVSSPRVTTANQKKAQIQQGTKIPYLRASSS-GATSVQFVDATLSLEVT 609 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P V +I + + + +G +PS + DT V + +G T VL G+ + + Sbjct: 610 PQVTPDDKIIMDLTIKKDR--VGQIFSGVPSIETQSVDTQVLVSNGETAVLGGIYEQTER 667 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +P IP LG F+ ++TE+ I TP ++ Sbjct: 668 NDVDKVPFFGDIPFLGNAFKRRVKQNDKTELLIFITPKIMDD 709 >gi|258406319|ref|YP_003199061.1| type IV pilus secretin PilQ [Desulfohalobium retbaense DSM 5692] gi|257798546|gb|ACV69483.1| type IV pilus secretin PilQ [Desulfohalobium retbaense DSM 5692] Length = 719 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 99/250 (39%), Gaps = 18/250 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-----HSITGSSSGPSKSFAADFGG 236 + V++ L+ E QV ++ I + + +G + G+ KS +A Sbjct: 477 RSVIDRLDRP-EPQVLIEARIVYAKDAFKRSLGVSLAGEYYDDVGAVGQYEKSLSAGVLQ 535 Query: 237 KFVSEGGDFSVKGVLDR------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 F E +++G LD+ F + L E +T++ P L ++ Q A + G Sbjct: 536 GFTPEVSTVNMQGALDKISGIDLFELDAQLKLGELKGVTKTISSPRLVTLNNQQAEISQG 595 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + S +G T + + + L P + ++ L + P + Sbjct: 596 IKIA-NESESESGGTDIEYTEATLKLAVQPQITPDDKVILDLDIADDSPTE-----NGED 649 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R A T + + + T+VL G+ + K +P L +P+LG LF+ N E E+ Sbjct: 650 IETRTARTKLLVENQETVVLGGVYQVIENNEKNQVPGLGDVPLLGWLFKTDNVNNENREL 709 Query: 411 FIAATPFLVK 420 I P +++ Sbjct: 710 LIFIRPTILE 719 >gi|90417988|ref|ZP_01225900.1| putative general secretion pathway (GSP) protein D [Aurantimonas manganoxydans SI85-9A1] gi|90337660|gb|EAS51311.1| putative general secretion pathway (GSP) protein D [Aurantimonas manganoxydans SI85-9A1] Length = 700 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 110/240 (45%), Gaps = 12/240 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG--- 249 + QV + VT+AEVR + + G Q+ I G + + + +++G V G Sbjct: 438 QMQVAVNVTMAEVRLNDQLRYGVQYFIKSGDIGLGRDKGSVGLFRTIADGIAREVPGFNF 497 Query: 250 -VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----- 303 V S + VL+AL+ T +R L+ P+L + + A F G Q T + ++ Sbjct: 498 VVGSESSPDIVLNALDAVTDVRVLSSPSLVVMENEVAKFRVGDQIPIVTRTVNSVEDANA 557 Query: 304 --ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + V D G++++ P + G + + I+ E+S P R +T+ Sbjct: 558 PISNEVEYRDTGIIMNVRPRIAENGVVTMVIEQEISSVTANA-GSLTPVISNRSVASTIS 616 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G T++L GL+ + ++GIP L+++ ++G LF + TE+ I P +++ Sbjct: 617 VVDGQTVLLGGLISEQSDVGRDGIPGLNRLKVVGNLFGSKSRADVRTELLILIRPSVIRD 676 >gi|253997792|ref|YP_003049855.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. SIP3-4] gi|253984471|gb|ACT49328.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. SIP3-4] Length = 604 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 66/313 (21%), Positives = 126/313 (40%), Gaps = 34/313 (10%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + + ET + + ++ ++ + + QV ++ +I EV + Q G Sbjct: 283 AATVIASPETGVISVRATSRQHEKVQEFLDKVMASARRQVLIEASIVEVTLNDTYQAGID 342 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------SFETVLHALERATAI 269 + G + S VS G + G + F L L++ Sbjct: 343 WTRLGGGFNINGSLGTT---GIVSPSGVAAAAGSVSPFVVGYSSNDISLGLRLLQQFGNT 399 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVT-------THDYGVVL 316 + L+ P L ++ Q+A +Y T+ S +TG+T++ T GVV+ Sbjct: 400 KVLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGLTTGSTNLQSVTTTPNTVPVGVVM 459 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPSG 365 TP + G++ + ++ +S V VN + +P +VR+ ++ + + SG Sbjct: 460 SVTPQINDLGQVNINVRPTISRVVSYVNDPNPQLANANVISRIPQIQVRELESVLRVNSG 519 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T VL GL++D+IQQ + +P +SKIP G LF +TE+ I P +++ + Sbjct: 520 NTAVLGGLMQDNIQQASDRVPEVSKIPFFGKLFTARSDFTIKTELVIFLRPIVIQNATLE 579 Query: 426 DLSRPDDHYSVED 438 + Sbjct: 580 SEELQSYKQYLPS 592 >gi|293603728|ref|ZP_06686147.1| type II secretion system protein D [Achromobacter piechaudii ATCC 43553] gi|292817902|gb|EFF76964.1| type II secretion system protein D [Achromobacter piechaudii ATCC 43553] Length = 611 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 118/286 (41%), Gaps = 12/286 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVS 240 ++V+ L+IA + +VT+ V + EV + ++G + S S P G + Sbjct: 315 ERVVAALDIA-QSEVTMDVQVLEVNANDELEVGVDYPSDLRFSVLPQGENGRITVGDLL- 372 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G + GV R L+ L++ + LA P + + + AS G + T ++ Sbjct: 373 -GLNQGKIGVTSRNDLSAALNLLQKRGKTKVLANPKIRVRNMEKASIKIGEKVPVVTTTN 431 Query: 301 STGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRK 355 + G + V D G++L P + + +++ EVS V G + R Sbjct: 432 ANGVVTESVNYQDVGLILQVEPRISLSNEVSVKVSMEVSNLKGEVKTAGGGVVYPMSTRN 491 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A+T + G T VLAGL+ + G+P LS + LG+LF + + TEI + T Sbjct: 492 AETVMTARDGETQVLAGLVNQQQTRSSSGVPGLSVMGWLGSLFGGQKKTDQNTEIVLLLT 551 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 P + + +A L D Y + + P +E + Sbjct: 552 PHIERSMA---LPSAADSYFPSGTESRVTVSPMTTQAPPAATTEAD 594 >gi|224373284|ref|YP_002607656.1| general secretory pathway protein D [Nautilia profundicola AmH] gi|223589728|gb|ACM93464.1| general secretory pathway protein D [Nautilia profundicola AmH] Length = 445 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 98/264 (37%), Gaps = 22/264 (8%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + K +N + +V + V I V + G S + D + Sbjct: 182 AIDKYINTMLNRLTKEVLIDVKIYTVELSKSHKTGIDWSQLSIQLNRT-----DVPLRGT 236 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--- 296 GG SV FS +L+ L + + +L+ P + ++ Q A + G YK Sbjct: 237 YIGGAQSVFSD-ATFSVVGLLNFLAQNGNVNSLSNPKVVTLNNQKAIISVGDTIYYKYAS 295 Query: 297 -TVSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAG 346 + G + GVVL TP + G I L I +S + Sbjct: 296 KVTTDQNGNPNTEYTIDSKFVGVVLDITPQISDNGDIILSIAPRISAFKDLTQLSNTTRD 355 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P + + V+L T+VL GL+ +D G+P+L +IP++ LF + Sbjct: 356 MPPDTKDNTMLSVVKLKDNQTLVLGGLITNDKTLQVNGVPVLKEIPLIKYLFSSREEVTS 415 Query: 407 ETEIFIAATPFLV---KPVAMRDL 427 E+ TP ++ K +RDL Sbjct: 416 RKELVFVITPHIINLKKKKTLRDL 439 >gi|182413440|ref|YP_001818506.1| type II and III secretion system protein [Opitutus terrae PB90-1] gi|177840654|gb|ACB74906.1| type II and III secretion system protein [Opitutus terrae PB90-1] Length = 673 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 77/353 (21%), Positives = 136/353 (38%), Gaps = 55/353 (15%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI----------QDSQRAVELSET 166 +D+A L L + ++ N + + T G VR AV L+ Sbjct: 292 AKDVAPL---LSQLVSGQNTAAQKAAGT---SGSVRAPVPQPNQPNQAATPDAAVALAGA 345 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRD 208 + + + Y + N + ++G QV ++V IAEV D Sbjct: 346 TVDTNEFSSYITILPDERSNSIVVSGTVDDIRLIRDLVEKVDILLAQVRIEVIIAEVTLD 405 Query: 209 ILKQIGF---QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + G ++ + +F GK G D S +GV++ +F+ L Sbjct: 406 DSNKTGLSALNLTVATPQGSSQGTHITNFAGKV--AGWDIS-QGVVNPLAFQAALGDAGT 462 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--SSSTGATS-----------VTTHDY 312 + ++ L+ PT+ + A G T +++ G+T+ VT D Sbjct: 463 RSNVKILSAPTIVTTHNKEAQILVGESLPIITGIYTTAVGSTTPTEPGFAQNQQVTYKDI 522 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + L TP + G I L+I +V + V I +N D P R+A + + + G +VL Sbjct: 523 AIDLKVTPLIGDDGSIQLKIDQKVDDVVRTISINNSDQPVIGRRQATSFINVSDGQIVVL 582 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 GL + + + + L +IPIL LF + TE+ + P ++ P A Sbjct: 583 GGLQRTANTRGRNKLGFLVEIPILSHLFGARTNSVRRTELLLFIRPHVIAPDA 635 >gi|77917753|ref|YP_355568.1| putative type II secretion system protein [Pelobacter carbinolicus DSM 2380] gi|77543836|gb|ABA87398.1| putative type II secretion system protein [Pelobacter carbinolicus DSM 2380] Length = 779 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 77/334 (23%), Positives = 130/334 (38%), Gaps = 33/334 (9%) Query: 157 SQRAVELSETFLS------QSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAE 204 ++ AV L T L RN +V+ L N + +V ++ + E Sbjct: 279 AKHAVNLLRTMLKINNLFVHEERNALVFRERPEVIQLAEQILDANDRADSEVLFELELIE 338 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETV-- 259 V S + S S GG V+ G GD + V S E+V Sbjct: 339 VSHSD------NWKFGPSLNPNSVSLGLAKGGNIVASGLSAGDATTNLVQSFSSLESVYT 392 Query: 260 -----LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDY 312 + LA P + + + A+ G + TV+++ + ++ D Sbjct: 393 LPTVVFDLQKTLVDSEILATPRIRVKNREKANVHVGNREPVITVTTTGETSTDNIQYVDV 452 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIV 369 GV L P + + + EVS N S KA TT+ L +G V Sbjct: 453 GVKLDIEPKIQLDDTVVTNLSLEVSGVTEKNTTANGSLALSISTTKAQTTLTLKNGERTV 512 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + GL++DD + ++ IPLL +P++G LF N ++++ EI ++ TP +++ V + D + Sbjct: 513 IGGLIRDDSTKTRKIIPLLGDLPLIGRLFTNHNKDKKKREILLSITPHILQNVDLPDRTL 572 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 D E++ K +I A E GQ Sbjct: 573 TDIWSGSEEELKTAANFASFQIPVEPVAEESSGQ 606 >gi|330815292|ref|YP_004358997.1| Type II/III secretion system protein [Burkholderia gladioli BSR3] gi|327367685|gb|AEA59041.1| Type II/III secretion system protein [Burkholderia gladioli BSR3] Length = 658 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 68/409 (16%), Positives = 132/409 (32%), Gaps = 76/409 (18%) Query: 83 SPRTMYLFGKNVGQANV------------ILIGHDGKQML-NLDILIERDIAHLEMTLRR 129 + +++ L G+ G A + L+ +G M D++ A L R Sbjct: 195 TGQSVVLSGRVQGSATLRIHDVPWRDAFDALLDANGLAMAMRGDVIWVAPAAELTARERA 254 Query: 130 FI--ADSNIRVEMVSDTV-------------VLHGMVRTIQDSQR---AVELSETFLSQS 171 +E ++ +L G V + R + + T L Sbjct: 255 RFEAHARMADLEPLASRTFLLRYPRANDVARLLTGAVANQRVLSRRGSVLADARTNLLFV 314 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------- 217 + ++ L+ QV ++ + E R +++G + Sbjct: 315 TDLDGRLAQIAALVAQLDRP-SRQVLIEARVVEGERGFSRELGARIALRTTRSLARGEGA 373 Query: 218 ---------------------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + G G AA G F + ++ Sbjct: 374 GSGGAPGPAQPAAGEGAPAGSGKPPATGLVGGPEGRLADLAARPIGGFEAATAGLTLFVA 433 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + L ALE + ++ P + A G + Y+ G + V Sbjct: 434 GASRLLDLELSALESQGRGQIVSRPRVVTADRAPALIEQGTELPYQ-AKVGRGVSGVQFR 492 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + L P + G + L + +AG P+ + T VE+ +GGT+ + Sbjct: 493 RATLKLEVEPQITPDGHVVLDLDIAKDSVGEQTDAG--PAIHTKHVRTRVEVENGGTVSI 550 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ + + +P+L KIP+LGALFR+ + +E+ + TP ++ Sbjct: 551 GGIYERNEWDDVTRVPVLGKIPVLGALFRHKARREQSSELVVYITPRVL 599 >gi|312897631|ref|ZP_07757048.1| bacterial type II/III secretion system short domain protein [Megasphaera micronuciformis F0359] gi|310621264|gb|EFQ04807.1| bacterial type II/III secretion system short domain protein [Megasphaera micronuciformis F0359] Length = 372 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 141/353 (39%), Gaps = 60/353 (16%) Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149 G++ G N+++ D N+ + + A + L+ I ++ + +E + +++ G Sbjct: 43 LGRSAG-MNILI---DESVKGNITVYLHNVSA--QEALQSVIHEAGLCLEEKNGIILIEG 96 Query: 150 ------MVR-----TIQDSQRAVELSETFLSQSGRNQYANS-------------SSKKVM 185 V + + A E++ L Q S ++K+++ Sbjct: 97 EGEGQKTVSEAFPLSYMKAADAAEVAGVALHQGSVMAVGGSNAIVMTGRHSDVTAAKQLV 156 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 ++ QV ++ I + ++ +K++G S + G Sbjct: 157 QAVD-RAPQQVDVEAEILSLNKEAVKELGIDWSWSEGGGGV------------------- 196 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA- 304 G E LHA LA+P + A +G A G + T + G Sbjct: 197 ---GKPRLPYIEARLHAFVSDGKASILAKPHIMATNGTEARIFIGDRIPVVTERVTGGER 253 Query: 305 -TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR--VRKADTTVE 361 + + G++L +TP + + G + I EV PV D+ +YR R+ DT V Sbjct: 254 YATTEYKEAGILLQYTPYIHTDGTVTANIHGEVGMPVY---VRDLRAYRVATRQVDTQVH 310 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + +G IV+ GL+ + + +P+L +P++G LFR+ +++ETE+ I Sbjct: 311 IKAGERIVIGGLIGKEETENLRKVPILGDLPLIGKLFRSRYRSKKETEVIILI 363 >gi|157363362|ref|YP_001470129.1| type II and III secretion system protein [Thermotoga lettingae TMO] gi|157313966|gb|ABV33065.1| type II and III secretion system protein [Thermotoga lettingae TMO] Length = 1179 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 10/240 (4%) Query: 187 LLNIAGE-DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 +L IA Q+ ++ + V R ++ +I Q+S++ S G + +S Sbjct: 943 ILQIAQPLKQIEIEAKL--VDRSLIDEITRQNSLSISLPGQAPEITVSSTSLSLSTSVIN 1000 Query: 246 -----SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + L S V LA P + SG+ A G + Y+T+ Sbjct: 1001 LFDYQKLFSYLSGASVTAVFELNNSNNLDNLLASPRIVTSSGKEARILIGDRVPYQTI-D 1059 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + G V D G+ L TP V + G I L I T+VS+P N D+P R+ +T V Sbjct: 1060 ADGNVIVNFLDTGIELRITPYVRTDGTIELNIFTKVSKPTYYPNI-DIPGESTRETETDV 1118 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L +G T+V+ GL+++ ++ +P L +P +G LFR+ ++ E+ I T +++ Sbjct: 1119 ILKNGDTLVIGGLMRETKEETSAKMPFLGDLPFIGQLFRSKTEKADKRELLIFITARVIE 1178 >gi|288817748|ref|YP_003432095.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] gi|288787147|dbj|BAI68894.1| general secretion pathway protein D [Hydrogenobacter thermophilus TK-6] gi|308751347|gb|ADO44830.1| type II and III secretion system protein [Hydrogenobacter thermophilus TK-6] Length = 700 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 60/284 (21%), Positives = 118/284 (41%), Gaps = 17/284 (5%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS------KKVMNLLNIAGEDQVTLKVTIAEV 205 ++ ++ V++ +S ++ + ++ L++ QV +++ IAEV Sbjct: 391 SEAKEEKKIVKVGNIVADKSTNTLIIKATPIEFEVIRSLLRELDVV-PKQVLIEMVIAEV 449 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-FETVLHALE 264 Q G + + G S + FG ++ + ++ + +L+ L Sbjct: 450 SLGKGLQYGVEGLLKGFLDSSSFTIGTSFGLAPQADTLQGFKTIIFNKNNDIRGILNFLA 509 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLY-------KTVSSSTGATSVTTHDYGVVLH 317 T+++ L+ P + + A G + T + V GV+L Sbjct: 510 SKTSLKVLSAPHILVKDNEEAKIEVGAEVPILTQQIVPVTGGTLNVQNMVQYRTTGVILK 569 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLK 375 PTV + + L+I EVS+ V ++ P R A TT+ L + +L G+++ Sbjct: 570 VRPTVSADNSVTLKITQEVSDAVKNTVQPELTSPLITKRSASTTLILRNDQVGLLGGIIQ 629 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +Q+ K G+PLLS IP LG LF N + TE+ + ++ Sbjct: 630 NRLQRQKSGVPLLSDIPGLGILFSNESVSSSNTELILLIKASVI 673 >gi|9625382|ref|NP_039614.1| gene IV product [Enterobacteria phage I2-2] gi|138048|sp|P15420|G4P_BPI22 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|14922|emb|CAA32520.1| gene IV product [Enterobacteria phage I2-2] Length = 428 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 108/245 (44%), Gaps = 12/245 (4%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + +++A +QV ++ + E + F ++ + G + GG Sbjct: 189 ITSIDVA-REQVLIQSLMFETSVSNGVDLSFALALASGGKVAGGFNTSALGTALSTAGGS 247 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298 F G+ + L A++ + + ++ P + SGQS + G + T Sbjct: 248 F---GIFNGNILALSLQAVQSDSNSKVISTPRILTQSGQSGYISVGQNVPFVTGKVTGEA 304 Query: 299 -SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 S + ++ D GV L TP V+ G++ L I T+ A D+ + R+ Sbjct: 305 ASVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLSNQAIASDIIT-NQRQIQ 363 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTV++ G T++L GL+ + +P +SKIP++G LFR+ ++++ +F+ T Sbjct: 364 TTVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIPLIGWLFRSHSDSKDDRTMFVLLTAH 423 Query: 418 LVKPV 422 +++ + Sbjct: 424 VIRAL 428 >gi|87309468|ref|ZP_01091603.1| Type IV pilin multimeric outer membrane protein [Blastopirellula marina DSM 3645] gi|87287776|gb|EAQ79675.1| Type IV pilin multimeric outer membrane protein [Blastopirellula marina DSM 3645] Length = 719 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 94/235 (40%), Gaps = 3/235 (1%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ TI V+ D +G + + D +K Sbjct: 339 PLQVAIEATILSVKLDDSLNLGVNFEALIDKNKVRLVSGFPLSALDQIKLTDGGLKFGFL 398 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVTTH 310 S + ALE +A P L ++ Q A G Q ++ TV+ + SV Sbjct: 399 DSSLGVFIDALESFGDTSVIASPQLLVLNKQRAEILIGEQKGYISTTVTETASTQSVEFL 458 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIV 369 + G L P + G + L + E+S+ + V +P+ V + T V P G TI+ Sbjct: 459 EIGTQLRLRPFITDDGMVRLEVHPEISDGDVKVEGQFTLPNKIVTQVTTNVICPDGRTII 518 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + GL+K D+++ IP L IPILG FR + E+ + TP +V + Sbjct: 519 IGGLIKSDLRKKGSQIPYLGSIPILGPAFRQKQETTVRDELIVLLTPRIVDAAHI 573 >gi|91774432|ref|YP_544188.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91708419|gb|ABE48347.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 539 Score = 160 bits (406), Expect = 4e-37, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 121/313 (38%), Gaps = 32/313 (10%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + + ET + + ++ ++ + + QV ++ +I EV + Q G Sbjct: 214 AATVIASPETGIISVRATNRQHEKVQEFLDKVMDSARRQVLIEASIVEVTLNDTFQAGID 273 Query: 217 HSITGSSS------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270 S G+ G S FSV + L L + + Sbjct: 274 WSRLGNGFNMRSELGLSSVLTPAGIAGTAGTSVPFSVGYSSTNSDIDFSLRLLRQFGDTK 333 Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-------------THDYGVVLH 317 L+ P L ++ Q+A +Y T+ S +V T GVV+ Sbjct: 334 VLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGTVQGSANLQAVTTTPNTVPVGVVMS 393 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------------MPSYRVRKADTTVELPS 364 TP + G + + ++ +S + V+ + +P +VR+ ++ +++ S Sbjct: 394 VTPQINDSGLVNINVRPTISRVLGYVDDPNPQLAAVTPPIVSRIPQIQVRELESMLQINS 453 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T VL GL++D+IQQ + +P ++K+P++G LF +TE+ I P +++ ++ Sbjct: 454 GNTAVLGGLMQDNIQQATDKVPGIAKVPLVGKLFTARSNFNVKTELVIFLRPIVIRNASL 513 Query: 425 RDLSRPDDHYSVE 437 + Sbjct: 514 ESDELASYKQYLP 526 >gi|311693304|gb|ADP96177.1| LOW QUALITY PROTEIN: pilus (MSHA type) biogenesis protein MshL [marine bacterium HP15] Length = 570 Score = 160 bits (406), Expect = 4e-37, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 120/314 (38%), Gaps = 35/314 (11%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 D Q+ + L ++ + + + QV L+ I E+ + Q G Sbjct: 239 DGQQVIVNPGAGLVMVRAGSEDLRMVEEYLRRTELIMQRQVILEAKILEIALNEGYQQGI 298 Query: 216 QHS-------ITGSSSGPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALER 265 S IT S P A G+ + GG FS + F ++ L + Sbjct: 299 NWSDIQSASSITASDGLPEDFTAQALAGQVIQTSDIGGLFSAS--VRAGDFTGLIELLGK 356 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLY-----------KTVSSSTGATSVTTHDY-- 312 ++ L+ P ++ ++ Q A G + ++ + +TSV + Sbjct: 357 QGNVQILSSPRISTVNNQKAVIKVGTDEFFCHRYDFDDNNSAVTATDSTSTSVELTPFFS 416 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSYRVRKADTTVELP 363 G+ L TP + G I L + VSE + S VR+ D+ + Sbjct: 417 GISLDVTPQISESGVITLHVHPSVSEVTDQEKVITIGERDVTLPLASSTVRETDSVIRAE 476 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPV 422 SG +V+ GL+++ + +P S+IP++G LF+ RF ++E+ I P + P Sbjct: 477 SGQIVVIGGLIQNSSEDNNSAVPFFSEIPLVGELFKQRRFQSRKSELVILLRPVVAGTPE 536 Query: 423 AMRDLSRPDDHYSV 436 D+S + +V Sbjct: 537 MNADVSASRERMNV 550 >gi|118594956|ref|ZP_01552303.1| general secretion pathway protein D [Methylophilales bacterium HTCC2181] gi|118440734|gb|EAV47361.1| general secretion pathway protein D [Methylophilales bacterium HTCC2181] Length = 1061 Score = 160 bits (406), Expect = 4e-37, Method: Composition-based stats. Identities = 60/295 (20%), Positives = 112/295 (37%), Gaps = 30/295 (10%) Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 V L G V + + + + +Q A K ++ L Q+ ++ + E Sbjct: 493 VPLAGQVSS-----------QLLVIYNPNDQKALLRVNKAISELIDRPAKQILIEGIVLE 541 Query: 205 VRRDILKQIGFQHSITGSSS-----GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259 + L ++G S T ++ G + G + + G SF Sbjct: 542 IASSELSKLGVNWSTTRTNGSIISLGTLAEITSVAAGSAAASVAYTTAGGTGAGPSFAAN 601 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTTHDYGVVL 316 L AL T + L++P+L + + AS G T + T G++L Sbjct: 602 LEALITKTKSQVLSKPSLMTLDNRQASIKVGTNIPIAASVTTAVGASTAGFTYLPVGIML 661 Query: 317 HFTPTVLSPGR-IGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSG 365 + P + + I + I +S+ GV P+ +RK T + + Sbjct: 662 NIRPRISDDNQEISMLIDATISQKVDDEDVIIYNSTGVAMASAPTTTLRKIQTYARVNNE 721 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +++AGL+ G+P+LS IP+LG LF + +TE+ + TP +++ Sbjct: 722 SPLIIAGLVSKQKTMTTTGVPVLSSIPLLGGLFSFESPSNVDTEVVLIITPTIIE 776 >gi|261414659|ref|YP_003248342.1| type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371115|gb|ACX73860.1| type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326330|gb|ADL25531.1| bacterial type II and III secretion system protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 487 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 100/245 (40%), Gaps = 22/245 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------PSKSFAADFGG 236 Q+ + + V ++ +++G + SS S + G Sbjct: 192 QIMITAKLVVVNSELARELGVDWTAALGSSTLTPGTAAAATGATAGSSRISGVIQSFPNG 251 Query: 237 KFVSEG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + G + ++ L + + + L + LA P ++ + A G + Sbjct: 252 TSPAVGKANTAITASLLDNNLQIAISNLMGDASTEVLASPQVSTLDNTEAQVFMGDKVSI 311 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + + +G +S + G+ L TP V RI L + E + G + ++ Sbjct: 312 RVI-DDSGESSTKMVETGIKLTVTPHVSGDNRILLDLHPENN--SYGYDEKGEVVISTQE 368 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A T V + G T+V+ GL +++ + + GIP L IP+LG LF+ SR + + ++ I T Sbjct: 369 AKTKVVVADGETVVIGGLTRNENTESESGIPFLKDIPLLGNLFKYSRKSITKKDLVIFVT 428 Query: 416 PFLVK 420 P +++ Sbjct: 429 PRIIR 433 >gi|256829756|ref|YP_003158484.1| type IV pilus secretin PilQ [Desulfomicrobium baculatum DSM 4028] gi|256578932|gb|ACU90068.1| type IV pilus secretin PilQ [Desulfomicrobium baculatum DSM 4028] Length = 693 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 44/242 (18%), Positives = 93/242 (38%), Gaps = 19/242 (7%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------G 243 E QV ++ + + + +G + + ++ + + + G F S G Sbjct: 458 RAERQVMIEARLVYATDEFQRSLGVKWGTSYATETAANLPSEQWRGTFASTGLNAINTVN 517 Query: 244 DFSVKGVL------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 ++ G + D F+ + L E ++T++ P + ++ A G + T Sbjct: 518 GITLGGTIGKFLGEDLFALDAALQLGEANNLVKTISSPRILTLNNNRAEIQQGTKLATAT 577 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 S S G T+ + + + P + ++ L ++ P D ++ Sbjct: 578 ESES-GGTTTEYEEAVLKISVLPQITPDNKLILDLEISDDSPK-----SDGRDIDTKQTK 631 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + + TIV+ G+ K IP L +P LG LF+N+ + + E+ I P Sbjct: 632 TKMMVSDRETIVIGGVQKTTETSNTNQIPGLGDVPGLGWLFKNTYDAKSKAELLIFIQPR 691 Query: 418 LV 419 ++ Sbjct: 692 IM 693 >gi|294055809|ref|YP_003549467.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] gi|293615142|gb|ADE55297.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] Length = 595 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 87/496 (17%), Positives = 181/496 (36%), Gaps = 79/496 (15%) Query: 13 SIFLFSSNPSVAKLPPIKEA---NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69 ++ S + A++P + A ++ V+ + G + ++ + I + P + V Sbjct: 66 AVAGVSVESADAEIPEVTVALPEDSTVVLDLPGQTGSVEAGTVEEEETISVDFPDEDVRV 125 Query: 70 LVSD-PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 ++ + D+ + P + VG+ ++ L +++ + + + + Sbjct: 126 ILFNVAELFDLNLVVPEAL------VGRTSIKLHNVTWREVFEVVLEPLGYAYIEDRNII 179 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK------ 182 + + ++I E V+ TV+ ++ + + ++ +G A+S Sbjct: 180 KVKSVADIAAEPVTTTVI---AIKHARAADIMGSIAPLVDGAAGGKMVADSRKNLLVITE 236 Query: 183 ------KVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHS---ITGSSSGP----- 226 K+ +L++ +QV ++ + EV + L+ +G S G S+GP Sbjct: 237 RPSQIQKIRDLVDEVDRATEQVMIETKLVEVFDEDLENLGVNWSSLNGYGLSAGPFTRQW 296 Query: 227 ------SKSFAADFGGKFVSEGGDFSVKGVLDRF--------------SFETVLHALERA 266 S +F ++ F ++D F +L ALE Sbjct: 297 DRSREKSTGTTTEFSPATDNQPAQFVTGNLVDSLASTSRLDTAVFNADQFNVILSALETL 356 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTHDYGVVLHFTPT 321 + + PT+ ++ + A F G + + ++ + + V GV L TP Sbjct: 357 NDTKLVTNPTVVVMNKRPAKFEVGRDYPIREITFNQETGTYEAGGVEETFIGVELEVTPE 416 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 VL G I L + +S V + P R DT V + G T+ L GL Sbjct: 417 VL-GGNIHLDVDPTISALDGTVESFGAIDPIVARRSVDTEVIIKDGYTLALGGLADTQEV 475 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT----------------PFLVKPVA 423 +P+L IP LG LF + + + + I T P +++ + Sbjct: 476 NSGTKVPILGDIPGLGRLFSSDSDSLGKRNLIIFITAKTLNPEGSDYRDVIDPRMIEEMG 535 Query: 424 MRDLSRPDDHYSVEDD 439 + D P H+ +D Sbjct: 536 ITDYEVPGYHFREGND 551 >gi|312880051|ref|ZP_07739851.1| type II and III secretion system protein [Aminomonas paucivorans DSM 12260] gi|310783342|gb|EFQ23740.1| type II and III secretion system protein [Aminomonas paucivorans DSM 12260] Length = 576 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 104/263 (39%), Gaps = 23/263 (8%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF-------QHSITGSSSGPSKSFA- 231 S +K ++ + G QV L+ I E+ D +++ ++G + Sbjct: 300 SIRKFLDKADHPG-QQVMLQARIVEIGDDGKEELESLISRVYKNWWFAFDNNGGMIGYTR 358 Query: 232 ----------ADFGGKFVSEGGDFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAI 280 A+ G D SV +F + L ALE A R LA P++ Sbjct: 359 INKPDLYDDDANDNRIVKPGGLDLSVVAQNPDLNFLDAGLRALETANKGRMLASPSVVVH 418 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 G+ A Y + G + + G + FTPTV I + + + E Sbjct: 419 DGKKAKIALTENVKYISARDQAGNPTYSEERVGPTIEFTPTVGRDRVITMEMTLKTGEVT 478 Query: 341 IGVNAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + G +P R+ ++TV + +G V+ GL +D + IP+L IP+LG L Sbjct: 479 KYIRGGMGEQVPQTSTREVNSTVRIRNGEPFVVGGLFRDGQTHSENKIPILGDIPLLGEL 538 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 FRN + TE+ + P+L+ Sbjct: 539 FRNRTTQKIHTEVAMIVIPYLLD 561 >gi|9630755|ref|NP_047359.1| maturation protein [Enterobacteria phage If1] gi|6136220|sp|O80300|G4P_BPIF1 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|3676288|gb|AAC62158.1| maturation protein [Enterobacteria phage If1] Length = 429 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 11/234 (4%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ I E F S S GG F G+ + Sbjct: 197 RTQVLVESVIFETTASDGFDFSFAAGDPSGSPVAGGINTDRLTSVLSSTGGSF---GIFN 253 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-------SSSTGAT 305 L ALE ++ L+ P + +SGQ +FT+G + T + + Sbjct: 254 GNILGLSLKALETSSKSTLLSMPRILTMSGQPGTFTAGQNVPFVTGRVTGEAANVNNPFQ 313 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 ++ HD G+ L P V G + + + T A D+ + R TTV+L SG Sbjct: 314 TIERHDVGISLKVVPVVTPGGLLIMDVSTNADSISDSQTASDIIT-NTRSISTTVQLKSG 372 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L G++ + +P +SKIP++GALF + N + ++I +V Sbjct: 373 QTVLLGGMVDNRESDSDSSVPWVSKIPLIGALFTSKSSNANKRTLYILIRARVV 426 >gi|134095138|ref|YP_001100213.1| mannose-sensitive hemagglutinin L [Herminiimonas arsenicoxydans] gi|133739041|emb|CAL62089.1| Putative general secretion pathway protein D [Herminiimonas arsenicoxydans] Length = 581 Score = 160 bits (405), Expect = 5e-37, Method: Composition-based stats. Identities = 70/335 (20%), Positives = 118/335 (35%), Gaps = 58/335 (17%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L +V + +D + V ++ + S + ++ + QV L+ I EV Sbjct: 223 LDAIVGSGKDGRSVVISPQSGVVVVKAMPDELRSVSAYLKATQLSVDRQVILEAKILEVE 282 Query: 207 RDILKQIGFQHSI----------------TGSSSGPSKSFAADF---------GGKFVSE 241 + Q G S T +G S + A GG+ + Sbjct: 283 LNDGFQTGVNWSAFRTGSSRISGGSISPGTVLQTGGSLATGASSIDATARTFSGGQLTAL 342 Query: 242 GGDFSVKGV----------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G + GV L +F ++ LE + L+ P + ++ Q A G Sbjct: 343 PGQDLLSGVSNLGSMFGLALQTKNFAALISFLETQGNVHVLSSPRIATLNNQKAVLKVGT 402 Query: 292 QHLYKT------VSSSTGATSVTT------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + T SS TG +VT GVVL TP + G I L I VS+ Sbjct: 403 DEFFVTNVSSNITSSGTGGNTVTPNVTLQPFFSGVVLDVTPQIDEQGNIILHIHPSVSDV 462 Query: 340 VIGV------NAGDMPSY-----RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 G + + + D+ V G I L GL++ + +P Sbjct: 463 QTSEKVINLGTGGGVLTLPLAKSNTSETDSVVRAQDGNIIALGGLMRQGTSSDRSQLPGA 522 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +P+LG LFRN+ + ++ E+ I P ++ + Sbjct: 523 GDVPVLGNLFRNTNQSTQKRELVILLKPTIIHNAS 557 >gi|319955805|ref|YP_004167068.1| general secretion pathway protein d [Nitratifractor salsuginis DSM 16511] gi|319418209|gb|ADV45319.1| general secretion pathway protein D [Nitratifractor salsuginis DSM 16511] Length = 664 Score = 160 bits (404), Expect = 6e-37, Method: Composition-based stats. Identities = 63/310 (20%), Positives = 123/310 (39%), Gaps = 35/310 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--SGPSKSFAADFGGKFV- 239 +V++ +++ + QV +K + E+ + IG ++ ITG S S + GG+ V Sbjct: 329 QVIHRIDV-EKPQVFIKARVVEINSKKARAIGAKYGITGGWLTSHGLISVGGNMGGEAVN 387 Query: 240 -----------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 S+ FS+ V F+ + L++ A L+EP++ + + Sbjct: 388 ISQRLMSLVQQSDDNAFSLSDVKSLFALGINIDLLQQDGAAHVLSEPSILCTNNMESELF 447 Query: 289 SGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 G T S++ + D G+ L P + S ++ L++ + + Sbjct: 448 VGETRSILTSSTAGDNKNDLSRNNYEREDIGLTLKVKPRLSSNNKVALKVDAIIEDVDDS 507 Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 P+ R T + +G T++L GL+K+ +P IPI+G LFR+ Sbjct: 508 SGYNSPTPTTTKRTITTNATVRNGQTVILGGLIKNLTGAAHNKVPFFGDIPIIGRLFRDE 567 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + + ++ I TP++V+ DL+R F + + I E Sbjct: 568 GTAQRKVDLVIYLTPYVVR--RSSDLTRLR-----------HFLSNLESIQHRYSRFIRE 614 Query: 462 GQNYKGAIGF 471 ++G G+ Sbjct: 615 RMRHRGNTGY 624 >gi|92116356|ref|YP_576085.1| type II and III secretion system protein [Nitrobacter hamburgensis X14] gi|91799250|gb|ABE61625.1| type II and III secretion system protein [Nitrobacter hamburgensis X14] Length = 773 Score = 160 bits (404), Expect = 6e-37, Method: Composition-based stats. Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 41/286 (14%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------PSKSFAADFGG 236 QV + TIAEV G Q +T + G P+ + D G Sbjct: 484 QVAIDATIAEVTLTNELSYGVQSYLTSKNLGMKANQGSLLNTQSNAAPIPTSAGTTDLAG 543 Query: 237 KFVSEGGDFSVKGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFT 288 S F + L F+F +L AL T+++ L+ P+L I+ Q+A+ Sbjct: 544 AAGSVANAF-INRALPGFNFLIGSEAQPAVILDALHAVTSVKVLSNPSLVVINNQTATLQ 602 Query: 289 SGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 G T +++ S+ + G++L +P + G + L ++ E+S Sbjct: 603 VGDTVPVSTGTATVLNGNNNVVNSIDYRNTGIILRVSPRINVNGNVRLEVEQEISSVQPT 662 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++ P+ R+ +++ + SG T++LAGL+ + + GIPLL +I LG F + Sbjct: 663 ASSTLTPTVAERRVKSSISVASGQTVLLAGLISEQQNGGRSGIPLLDEIRGLGDAFAHQG 722 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448 TE+ I P +++ D + V ++ ++ V Sbjct: 723 KRGTRTELIIFIRPQIIRDG--------TDAHHVAEELRSKLRGSV 760 >gi|330719673|gb|EGG98224.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC2047] Length = 419 Score = 160 bits (404), Expect = 6e-37, Method: Composition-based stats. Identities = 56/317 (17%), Positives = 110/317 (34%), Gaps = 45/317 (14%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 +++R V ++ + + + ++ ++ QV L+ I EV Q Sbjct: 86 AGENRRVVVSPQSGMVIVHALASELRAVAEFLDKAELSLRRQVILEAKILEVELSDGFQA 145 Query: 214 GFQHS--------------------------ITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 G S +TG ++ + S+ Sbjct: 146 GVNWSALAEVGQDKNVIFGTGLTNSVRTINPVTGDTTLTNTILGTPTATTATSDSVGGVF 205 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---------- 297 L+ F ++ L +++ L+ P ++ ++ Q A G + T Sbjct: 206 SAALNLKDFNALIDLLSTQGSVQVLSSPRISTVNNQKAVIKVGTDEFFVTEISSETTTNT 265 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------- 350 S+++ +T G+ L TP + G + L I VSE P+ Sbjct: 266 SSTTSTDVELTPFFSGIALDVTPQISEEGEVVLHIHPTVSEVTDQTKTVVGPNGDLVLPL 325 Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 +R+ D+ V +G +V+ GL+++ P L +P+LG FR R + ++ Sbjct: 326 ALSSIRETDSIVRARNGQVVVIGGLMQNSSTDNNAKTPFLGDLPLLGNAFRQKRQSSVKS 385 Query: 409 EIFIAATPFLVKPVAMR 425 E+ I P + A R Sbjct: 386 ELVILLKPIIADDDAWR 402 >gi|152991627|ref|YP_001357348.1| type II secretion system protein D [Sulfurovum sp. NBC37-1] gi|151423488|dbj|BAF70991.1| type II secretion system protein D [Sulfurovum sp. NBC37-1] Length = 678 Score = 160 bits (404), Expect = 6e-37, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 39/277 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGKFV 239 ++ + ++I + QV +K I E+ +++ +Q+G ++ + G + S + A + G + Sbjct: 325 RETVRKIDIP-KVQVYVKAKIVEIDKNMAEQVGMKYGMNGGTITSSGLFTLAGNMGASAL 383 Query: 240 S----------------------------EGGDFSVKGVLDRFSFETVLHALERATAIRT 271 F F+ L LE+ A Sbjct: 384 QMSPALLGFLNTNNTKTYTDPVTGSVIQENNPAFKFDSTDKAFALGAALDLLEKNGAAHL 443 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSP 325 L+EP++ + + A G T + + + + D G+ L P + S Sbjct: 444 LSEPSVLCTNNKEAEIYVGQTRSILTQAQQSTTAISNVINNYSREDIGLTLKVKPRLSSN 503 Query: 326 GRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 ++ L ++T + + D P+ R T + +G I+L GL+K + Sbjct: 504 NQVTLEVETVLEDIDPSSEQVEDRPTTTKRTVKTNAIVRNGEMIILGGLIKRAGGKNISK 563 Query: 385 IPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVK 420 +P L IP+LG LF ++ E + I TP++V+ Sbjct: 564 VPFLGDIPVLGEMLFTHTGDVEREQNVVIYLTPYIVR 600 >gi|302879515|ref|YP_003848079.1| type II and III secretion system protein [Gallionella capsiferriformans ES-2] gi|302582304|gb|ADL56315.1| type II and III secretion system protein [Gallionella capsiferriformans ES-2] Length = 599 Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 54/307 (17%), Positives = 116/307 (37%), Gaps = 31/307 (10%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 T +++ + ET + +++ ++ ++ + QV L+ TI EV Q Sbjct: 272 TYREAAYVIANPETGIISVRATSRQHATIREFIDKVMNNARRQVLLEATIVEVTLSDQYQ 331 Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 G S+ + G S + + G ++ G FS + LE + L Sbjct: 332 QGIDWSLL-RTLGLSLTQVSPVGALTAMGTISYTNPGKPGSFSLSGSIKLLETFGKLHVL 390 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------------ATSVTTHDYGVVLHF 318 + P L+ ++ Q+ + +Y T+ + G +++ T G +++ Sbjct: 391 SSPKLSVLNNQTGLVKVVDESVYFTIEVTQGTYGANNTVLTLPTYTSTIHTVPVGFMMYV 450 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVN----------------AGDMPSYRVRKADTTVEL 362 TP + + L ++ ++ + +P + R+ ++ + + Sbjct: 451 TPQIGGDTEVTLNLRPTITRILSYAKDPNPALINTITPALSVTNLIPQIQTREMESIMRV 510 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +G VL GL++D IP L +P LG LF+ ++E+ + P ++ Sbjct: 511 RNGDIAVLGGLMQDTRAGDTNQIPGLGSVPGLGQLFKARTDKNTKSELVVFLRPVILNQE 570 Query: 423 AMRDLSR 429 DL R Sbjct: 571 TQYDLVR 577 >gi|301165498|emb|CBW25069.1| putative pilus assembly protein [Bacteriovorax marinus SJ] Length = 609 Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 59/266 (22%), Positives = 108/266 (40%), Gaps = 29/266 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--------------------- 220 KK++++L+ QV ++ I EV + K+IG Q+ + Sbjct: 334 KKIVDVLDTQTP-QVLIESKIVEVNENYRKEIGLQNGVNFGYDPIGQIGSANPTVVGSDV 392 Query: 221 --GSSSGPSKSFA-ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 G+++GP SF+ A G +V + L LE + + +A P + Sbjct: 393 LPGTNAGPGFSFSSAPSSGDGARSLFGLTVTRFNRLLNLSFTLQLLETESKGKIVASPKV 452 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + + A ++ + S+ G + + + L TP V + G I L + Sbjct: 453 ITQNKKKAVISTKETTSFSKSLSTNGQAQEITFEEAEASLSLEVTPQVTNEGSISLELDL 512 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + +A P + R+ T V + +G TIV+ G+ + ++ G+P L IP++ Sbjct: 513 LKQQFGTRPSAAAPPDKQERRVTTNVLVDNGSTIVIGGVYNYEKRESHSGVPFLKDIPLV 572 Query: 395 GALFRNS-RFNREETEIFIAATPFLV 419 G LFR + E+ I TP +V Sbjct: 573 GWLFRTPYAPEVIKQELLIFLTPRIV 598 >gi|154147986|ref|YP_001406614.1| type II and III secretion system protein [Campylobacter hominis ATCC BAA-381] gi|153803995|gb|ABS51002.1| type II and III secretion system protein [Campylobacter hominis ATCC BAA-381] Length = 541 Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 60/312 (19%), Positives = 112/312 (35%), Gaps = 68/312 (21%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------ITGSSSGPSKSFAA 232 +N + E QV+L V+I V G S + G S P+ Sbjct: 212 DAYINKMKKRLERQVSLDVSIVAVELSNSYTTGIDWSKFQLGFNTYLNGDPSTPTSYSFG 271 Query: 233 D----------------------------------------FGGKFVSEGGDFSVKGVLD 252 + G S+ G Sbjct: 272 NRNKVGQVTSLPQIEDIKDKDGKILFSRPTSLGTWDYKEKSMGSVKASDSNGVWAIGANL 331 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GAT 305 F+ + +++ LE + ++ P +T ++ Q A + G Y+ ++T G T Sbjct: 332 NFNIDGMINFLETKGKTKIISSPKVTTMNNQPAIISVGDVINYRIQENTTSGGQTDAGTT 391 Query: 306 SVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSE--------PVIGVNAGDMPSYRV 353 SVT +Y G++L+ P + RI LR+ +S+ ++ P Sbjct: 392 SVTYTNYSTFIGILLNILPEISDDNRIMLRVNPSLSDFKYQADREATAQLDRVMAPDTIQ 451 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 +K + V + G T++L GL+ + + + +P LS IP++G LF+++ TE+ Sbjct: 452 KKISSVVWVDDGDTVILGGLIGQNKGKDNKNVPFLSDIPLIGNLFKSTADRLTTTELVFV 511 Query: 414 ATPFLVKPVAMR 425 TP ++ + Sbjct: 512 ITPRIIDNTDTK 523 >gi|170700771|ref|ZP_02891764.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] gi|170134335|gb|EDT02670.1| type II and III secretion system protein [Burkholderia ambifaria IOP40-10] Length = 244 Score = 159 bits (403), Expect = 8e-37, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 89/213 (41%), Gaps = 3/213 (1%) Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 R + + + + + + AA G F + F++ + L ALE Sbjct: 2 RAQGRAPTTDGAASATDTRNALDLAARPLGGFEAATAGFTLFAAPLSRVLDVELSALEAQ 61 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + ++ P + A G + Y+ G + V + L P + G Sbjct: 62 GRGQIVSSPRVVTADRVKAIVEQGSELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDG 120 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 R+ L + +V++ IG P+ + T VE+ +GGT+ + G+ + + +P Sbjct: 121 RVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTRVP 178 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 LL KIP+LGALFR+ + +E+ + TP +V Sbjct: 179 LLGKIPVLGALFRHRARRDQRSELVVFITPTVV 211 >gi|225850524|ref|YP_002730758.1| putative pilus [Persephonella marina EX-H1] gi|225645353|gb|ACO03539.1| putative pilus [Persephonella marina EX-H1] Length = 524 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 63/265 (23%), Positives = 111/265 (41%), Gaps = 22/265 (8%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSF 230 +Y +K + + + QV ++ I EV Q G S + + +G S S Sbjct: 259 TAPKYKMRKVEKFLKKILSEVKKQVLIESKIVEVTLSDGMQYGINWSALLRNVAGASISL 318 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 S G+ V G+ F V++AL I TL+ P + ++GQ+A +SG Sbjct: 319 RQTLA--LPSSYGEVVVAGL----DFNAVINALSSVGRIETLSNPRIRVLNGQTALISSG 372 Query: 291 GQHLYKTVSSSTGATSVTTHDY---------GVVLHFTPTVLSPGR------IGLRIQTE 335 Y +T T+ T GV+L TP + + +I+ Sbjct: 373 VVVPYWEKQITTLGTTTVTQSVMYIRRSVLSGVLLGVTPYIEGDHIMINIVPVSTKIEGT 432 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + P +++A T +++ G I++ G++ + + + IPLLS IP+ G Sbjct: 433 KQLVENNEVVAEAPVLNIKEAGTIIKVKDGDLIIIGGMINTEKRVEENKIPLLSNIPVFG 492 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 LF+N + RE+ E+ I P ++K Sbjct: 493 NLFKNKKVYREKKELIIFLKPRIIK 517 >gi|329890282|ref|ZP_08268625.1| general secretion pathway protein D [Brevundimonas diminuta ATCC 11568] gi|328845583|gb|EGF95147.1| general secretion pathway protein D [Brevundimonas diminuta ATCC 11568] Length = 698 Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats. Identities = 57/312 (18%), Positives = 114/312 (36%), Gaps = 45/312 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +V+ L++ QV ++ + E+ ++ +G Q + G +++ G Sbjct: 352 EVIRQLDVR-RQQVLIEAIVVELSDKAVRDLGVQWLMAGEQGVGLTNYSDRAAPLVPIAG 410 Query: 243 G-----------------DFSVKGVLDRFSF-------------ETVLHALERATAIRTL 272 G + ++ +L F +++A + L Sbjct: 411 GAAAGQLDKDDPLRERLQNLALNSLLGANGFVGGAGGKWGDGLFGFIINAAKTDAGSNLL 470 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGR 327 P++ + + A+F G + T + S T+ D GV L P + + G Sbjct: 471 QTPSIMTLDNEEATFLVGQEVPITTGQTILDGNSNPFTTTERKDIGVRLTVRPQINAGGS 530 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L ++ EVS + +G R+ +TT+ + G V GLL + +P Sbjct: 531 ITLTLRQEVSSINGLLTSGANDLILDKRELETTLVVDDGDIAVAGGLLDQNDGLETSKVP 590 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 L IP +G LFR++ R T + + P +++ A D + D + Sbjct: 591 GLGDIPGVGVLFRSTSRERGRTNLMVFLRPTILRTTA--------DAQGLAADRWGYMRG 642 Query: 447 RVNKIYGPKEAS 458 +++ +E S Sbjct: 643 EQQRVHPDREPS 654 >gi|254445969|ref|ZP_05059445.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] gi|198260277|gb|EDY84585.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] Length = 736 Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 114/283 (40%), Gaps = 23/283 (8%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG-----FQHSITGSSSGPSKSFAADFGG-- 236 ++N ++I QV ++V IAEV + + + F + G + G Sbjct: 426 LVNKIDILLP-QVRIEVIIAEVSLNENEGLSRGMDAFSMTYAEQDDGSANITIPGPGDDA 484 Query: 237 ---KFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 F+ G D S GV+ + +L+ + ++ L+ PTL + A+ Sbjct: 485 PAINFLGLGLDGSFNYNDGVISGLTLNGILNTARSNSNVQLLSVPTLVTTHNKEATIVVA 544 Query: 291 GQHLYKTVSSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGV 343 T S ++ + +V D G+ L TP + I L I ++ + + + Sbjct: 545 EARPIVTSSQTSSISDTFRQNVQYEDIGIELTVTPLIGPNDVIQLEIDQKIDDISGKVTI 604 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + D P R+A + V + + +VL GL ++ + + + + L +IP+LG LF Sbjct: 605 DGNDQPIIGRRQATSYVSVANHELVVLGGLQRNRVTKGRSKMSFLGEIPLLGGLFNRRSD 664 Query: 404 NREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDDAKAFF 444 +TE+ + P +++ +D S+ D + F Sbjct: 665 ESVKTELLVFIRPEVIRTTDDVNQDASKKIDELEAAAAIQRFL 707 >gi|268679665|ref|YP_003304096.1| pilus (MSHA type) biogenesis protein MshL [Sulfurospirillum deleyianum DSM 6946] gi|268617696|gb|ACZ12061.1| pilus (MSHA type) biogenesis protein MshL [Sulfurospirillum deleyianum DSM 6946] Length = 506 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 107/284 (37%), Gaps = 31/284 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + + LL QV + V+I V D + G S + F + + Sbjct: 218 EYIELLKERLHKQVLIDVSIISVALDSSNKTGIDWSKFQLGFNSTSMFNNNNDNANMYHT 277 Query: 243 GDFSVKGVLDR-------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +S G+ FS ++ L + + ++ P + ++ Q A T Sbjct: 278 SPYSEVGLSGTPILNNLTVVNDAVFSVSGLIDFLGSSGDAKVVSSPKVLTMNNQQALITV 337 Query: 290 GGQHLYKT-------VSSSTGATSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSE 338 G Y+ +S T SVT +Y GV+L+ TP + I LRI VS Sbjct: 338 GDNINYRIPEETDAATTSGTATLSVTYMNYSIFIGVLLNITPEISEDNEIILRINPSVSS 397 Query: 339 PVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + P + +K T V++ G TI+L GL+ + +PLLS I Sbjct: 398 FKYTDDDQKTTEPREIAPDTQEKKLSTVVKVKDGSTIILGGLIASEKGHENSSVPLLSSI 457 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 P+LG F++S + E+ TP ++ + D +S Sbjct: 458 PLLGEAFKHSEETLKTKELVFVITPRIIGAKGTDKATLKDLGFS 501 >gi|152993261|ref|YP_001358982.1| general secretory pathway protein D [Sulfurovum sp. NBC37-1] gi|151425122|dbj|BAF72625.1| general secretory pathway protein D [Sulfurovum sp. NBC37-1] Length = 536 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 60/294 (20%), Positives = 115/294 (39%), Gaps = 39/294 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSKS 229 + +N+L+ + QV + V I V+ D + G S I + S + Sbjct: 244 RYINVLSRQIKTQVLIDVRILAVKFDDSRTTGVDWSQLYGLQNFAVDSLIMAQKNVASYT 303 Query: 230 F-----AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 F D ++ + S+ + + + V+ L ++ ++ P + ++ Q Sbjct: 304 FDKLNGIQDTAFGPDTQPRNGSLVQLTGKANINEVVKFLATQGDVKAISSPRVMTLNNQP 363 Query: 285 ASFTSGGQHLYKTVSSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 A + G + YK S+S T SV + G++L TP + + G I L+I Sbjct: 364 AMISVGKELFYKLKSTSALGTGNNANTAQGESVDSVFAGILLDITPEIGNNGIITLKINP 423 Query: 335 EVSEPVIGVNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +SE + + P R+ + V++ G +L GL+ I Sbjct: 424 SISETIEDIQTQKNTVTGSRDMPPDLIRRQIASVVKVKDGEHAILGGLITSSTGTKVNKI 483 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 PLL IP+L F++ E+ + TP +VK + ++ D Y+ ++ Sbjct: 484 PLLGDIPLLEYAFKHEEKINRVEELVLIITPHIVK--TSKSVTLKDLGYTKLNE 535 >gi|9626242|ref|NP_040579.1| G IV protein [Enterobacteria phage Ike] gi|138049|sp|P03667|G4P_BPIKE RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|14956|emb|CAA26076.1| unnamed protein product [Enterobacteria phage Ike] Length = 437 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 101/245 (41%), Gaps = 12/245 (4%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + +++A DQV ++ + E + F + G + GG Sbjct: 198 ITSIDVA-RDQVLIQSLMFETSLVNGVDLSFAAGSASGDKVAGGFNTSALGTALSTAGGS 256 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298 F G+ + + A++ + + ++ P + SGQ+ + G + T Sbjct: 257 F---GIFNGNVLALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVTGEA 313 Query: 299 -SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 + + ++ D GV L TP V+ G++ L I T+ + A D+ + R Sbjct: 314 ANVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQMTASDIIT-NQRHMQ 372 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTV++ G T++L GL+ + +P +P++G LFR+ + E +F+ T Sbjct: 373 TTVQIKDGQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAH 432 Query: 418 LVKPV 422 ++K + Sbjct: 433 VIKAL 437 >gi|58091874|gb|AAW65366.1| gene IV protein [synthetic construct] Length = 437 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 101/245 (41%), Gaps = 12/245 (4%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + +++A DQV ++ + E + F + G + GG Sbjct: 198 ITSIDVA-RDQVLIQSLMFETSLVNGVDLSFAAGSASGDKVAGGFNTSALGTALSTAGGS 256 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298 F G+ + + A++ + + ++ P + SGQ+ + G + T Sbjct: 257 F---GIFNGNVLALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVTGEA 313 Query: 299 -SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 + + ++ D GV L TP V+ G++ L I T+ + A D+ + R Sbjct: 314 ANVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQMTASDIIT-NQRHMQ 372 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 TTV++ G T++L GL+ + +P +P++G LFR+ + E +F+ T Sbjct: 373 TTVQIKDGQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAH 432 Query: 418 LVKPV 422 ++K + Sbjct: 433 VIKAL 437 >gi|313202169|ref|YP_004040827.1| type IV pilus secretin pilq [Methylovorus sp. MP688] gi|312441485|gb|ADQ85591.1| type IV pilus secretin PilQ [Methylovorus sp. MP688] Length = 714 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 64/342 (18%), Positives = 117/342 (34%), Gaps = 63/342 (18%) Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 +L+ + D ++ + VL T+ A L E ++ Sbjct: 387 AESLKNILTDEKQKILSKRGSAVLDPRTNTVFVQDTAKHLEEI---------------QQ 431 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++N +I QV ++ + K +G + +T S+ G + Sbjct: 432 IINKTDIP-VKQVMIESRLVIADEKFGKSLGARFGMTQQSADGRNVIGGTLGNRITEVSS 490 Query: 244 DFSVK---------------------GVLDRFSFETVLHA-------------------- 262 D ++ G D S V +A Sbjct: 491 DGTITQGTHNGTIQTATTGSTATSSDGEPDLMSNLPVSNAYGNLAFTLLRLPAGLLLNLE 550 Query: 263 ---LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 LE + ++ P +T + + A G + Y SSS GATSV D + L T Sbjct: 551 LSALETDKRGKVVSSPRVTTANQKKAQIQQGTKIPYLRASSS-GATSVQFVDATLSLEVT 609 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P V +I + + + +G +PS + DT V + +G T VL G+ + + Sbjct: 610 PQVTPDDKIIMDLTIKKDR--VGQIFSGVPSIETQSVDTQVLVSNGETAVLGGIYEQTER 667 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + +P +P +G F+ ++TE+ I TP ++ Sbjct: 668 NDVDKVPFFGDLPFVGNAFKRRVRQNDKTELLIFITPKIMDD 709 >gi|332186824|ref|ZP_08388566.1| general secretion pathway protein D [Sphingomonas sp. S17] gi|332013157|gb|EGI55220.1| general secretion pathway protein D [Sphingomonas sp. S17] Length = 739 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 72/352 (20%), Positives = 134/352 (38%), Gaps = 24/352 (6%) Query: 104 HDGKQMLNLDILIERDIAHLE--MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G+ + + + + ++R I + ++++ + V++ +V + D Q A Sbjct: 343 QGGRTAAVVTRFVGANAIVIAGPADIQRQIGEVIRQLDVRREQVLIEAIVAEVSD-QTAR 401 Query: 162 ELSETFL--SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 L FL S SG A++ N+L IAG + R I+ + Sbjct: 402 RLGAQFLLGSLSGGAFAASTYGNTAPNILQIAGA----VGAQTLGGTRTIVTAPDGTRTE 457 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 T + + G F G + F +++A++ T L P + Sbjct: 458 TNVPNPAFSQLTQSAVQSILGTTGGFAGWGGQVGDTVFGAIINAVKSDTTSNLLQVPHII 517 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + Q A G + T + + +V + G+ L P V + G + L ++ Sbjct: 518 TLDNQQAHSLVGQEIPVTTGQALSNNFDNAFRTVQRQNVGIQLDVKPQVNAGGSLKLYVR 577 Query: 334 TEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 EVS V++ + R + G V+ GLL D+ ++ E IPLL IP Sbjct: 578 LEVSSIAGPVSSNNSELILNKRAFENVFTPDDGQITVIGGLLDDNERRTIEKIPLLGDIP 637 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 LGALFR+ +R +T + + P +++ P+D V + + Sbjct: 638 GLGALFRSKARSRSKTNLMVFIRPTILR--------TPEDSRRVTEQRYGYL 681 >gi|297538460|ref|YP_003674229.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301] gi|297257807|gb|ADI29652.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301] Length = 589 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 60/322 (18%), Positives = 108/322 (33%), Gaps = 49/322 (15%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L+G+V + V + + + + + L+ + E QV L+ I V+ Sbjct: 230 LNGIVGNENGHRVVVNVQSGVIMVRAMP-AEVRNVEAFLRLMQVTIERQVILEAKIMNVQ 288 Query: 207 RDILKQIGFQHSITGSSSGPSKSFA---------------------ADFGGKFVSEGGDF 245 + Q G S+ G S + + G ++ Sbjct: 289 LNDQSQSGVNWSVFGKSGSNTGIVGNLNAKTTLGRAGNGDVTSGDLSASSGNVIANTATT 348 Query: 246 SVKG-----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 ++ G L +F +L LE ++ L+ P + I+ Q A G + T S Sbjct: 349 ALGGPLFAVALQGANFAALLSFLETQGDVQVLSSPRIATINNQKAVLKVGTDEFFVTGIS 408 Query: 301 STGA-----------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------- 341 S ++ G+ L TP + I L + +S+ Sbjct: 409 SNTTASTGATTTSPEVTLQPFFSGIALDVTPQIDKDDNIILHMHPSISQVTTVNKQLNLG 468 Query: 342 GVNAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 GV+ + S V + D+ V G I + GL+ + K +P L I +G F Sbjct: 469 GVSGNINLPLASSNVSETDSIVRTHDGRVIAIGGLMTESSISNKSKVPGLGDIKGVGNAF 528 Query: 399 RNSRFNREETEIFIAATPFLVK 420 R +TE+ I +V+ Sbjct: 529 RQKGSTSSKTELVILLKATVVQ 550 >gi|300690947|ref|YP_003751942.1| type II secretory pathway, gspd-related protein [Ralstonia solanacearum PSI07] gi|299078007|emb|CBJ50649.1| putative type II secretory pathway, gspd-related protein [Ralstonia solanacearum PSI07] Length = 759 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 84/409 (20%), Positives = 153/409 (37%), Gaps = 49/409 (11%) Query: 51 SIGLNKVIILQVPVDVQD-VLVSDPTKADVV--VHSPRTMYLFGKNV--GQANVILIGHD 105 S G+N ++ V D++ V + D + + S + K + G +I Sbjct: 204 STGINFILDKDVRPDLKTTVFIRQAKLEDALDLILSTTQL---NKKMMNGSTILIYPNTP 260 Query: 106 GKQMLNLDILI------ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 KQ D+++ D L+ + + ++ ++ VV+ +S Sbjct: 261 EKQRDYQDLVVRAFYLTNADAKQTGAMLKAMLKIRDPYIDERTNMVVIR-------ESPD 313 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 V L+E + RN +V+ + L Q+G Q+ Sbjct: 314 VVRLAERLVELQDRNDSEVVLEVEVLEV------------------SSTKLTQLGVQYPN 355 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + + + S + A +S+ + + + VL+ LA P + A Sbjct: 356 SFTLTPLSATGATSL---TLSDFKGLNSDRI-GVSTPNVVLNLRRELGDTDLLANPKIRA 411 Query: 280 ISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + + A G + T +S++ + SV D G+ L P++ + ++I EV Sbjct: 412 KNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEVSMKINLEV 471 Query: 337 SEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 S + R A+T ++L G T +LAGL+K IP L IP+ Sbjct: 472 SSLTNQITTRSGTVAYQIGTRTANTVLKLHDGETQLLAGLIKTQQTSSAARIPGLGDIPL 531 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 LG LF + N EI ++ TP +VKP D + + E +A+A Sbjct: 532 LGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPDTNFMEFWSGTETNARA 580 >gi|120602835|ref|YP_967235.1| type II and III secretion system protein [Desulfovibrio vulgaris DP4] gi|120563064|gb|ABM28808.1| type II and III secretion system protein [Desulfovibrio vulgaris DP4] Length = 524 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 124/314 (39%), Gaps = 42/314 (13%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAE 204 L G + + ++ + + S Q K++ L+N + Q+ LK I E Sbjct: 203 LEGFLSKDEQNKPVGAVVVDTHTNSLIVQAVEDDLSKIITLVNNLDKPRAQILLKAHIVE 262 Query: 205 VRRDILKQIGFQHSITGSS---------------SGPSKSFAADFGGKF--VSEGG---- 243 RD + +G Q G S SGP+K GG + GG Sbjct: 263 ATRDTARDLGIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVPVIPPGGLSGQ 322 Query: 244 ----DFSVK--------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 +F V G + E L AL+ + L+ P+++ + Q A Sbjct: 323 GFGMNFPVNKAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSPSISTLDNQMA 382 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 +G + Y +++ G V D + L TP V+ + L++Q + E + Sbjct: 383 FTENGEKVPY-VSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLTRTV 441 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P ++ +TT+ + G T+V++GL K+ ++G+P L + +GALF N Sbjct: 442 EGNPFIIKKQTETTLIVQDGETVVISGLTKERSSSRRQGLPYLQDVEGIGALFGNDSKAN 501 Query: 406 EETEIFIAATPFLV 419 + ++ I TP ++ Sbjct: 502 KLEDVLIFITPAIL 515 >gi|171319027|ref|ZP_02908154.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] gi|171095782|gb|EDT40735.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] Length = 633 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 13/248 (5%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-------SSGPSKSFAADF 234 + V+ L++ + V ++ I +V+ LK+IGF ++ GS +SG Sbjct: 317 EDVVRDLDV-EPELVQIEAAIIDVQDGALKEIGFDWALQGSQFRIASTTSGAGIGRDLGN 375 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + G +FS+ G SF + +HAL+ L+ P L ++G A T+ Sbjct: 376 ADRVRGNGPNFSIFGGSSALSFLSRIHALQTEGKASVLSRPKLATLNGIEAVLTNQQVFY 435 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL--SPGRIGLRIQTEVSEPVIGVN-AGDMPSY 351 + S+ + D G+ + P V+ S G+ +R+Q + + +G +P Sbjct: 436 PRV--SNERVAQLYQVDVGLQMRVVPAVVRRSDGKADIRLQVFIEDGSLGSQRVDGLPVT 493 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T + +G ++++ G ++D + + +PLL IP+LGALFR + E Sbjct: 494 SKSAITTQALVRNGESLLIGGYVRDVNDRGEAKVPLLGDIPLLGALFRFRSTQTDRQERL 553 Query: 412 IAATPFLV 419 TP L+ Sbjct: 554 FLITPKLL 561 >gi|82703698|ref|YP_413264.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411763|gb|ABB75872.1| type II and III secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 749 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 151/386 (39%), Gaps = 36/386 (9%) Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 DV S T+++ + N+ L + + L ++ + Sbjct: 212 DVKQDSKTTIFVR-----ETNI------EDVFKLLLVTNQLAHKVLNENSVLIYPNTPAK 260 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVEL-----SETFLSQSGRNQYANSSSKKVMNL----- 187 + + +V V Q + ++ N + + + + L Sbjct: 261 QKEYQELMVRSFFVTNTDVKQMVAMVKGLIKTKDMHVDEKLNLFVMKDTPEAIRLAERLV 320 Query: 188 -LNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFGGKFV 239 LN + +V L+V + E+ R+ L +G Q+ +T +S+ + F + Sbjct: 321 TLNDLADPEVMLEVEVLEIGRNKLLNLGLQYPEKINVNYLTAASAAGAAPFPPFQISRAG 380 Query: 240 SEGGDFSVKGVLDRFSFETVL-HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ ++ + ++ + ++ I LA P + + + A G + T Sbjct: 381 VNGNGSNLDNLIGFVANPALIVNLKQQDGLINVLANPRIRVKNREKAKVLIGDKVPVVTT 440 Query: 299 SSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYR 352 +++ A+SV+ D G+ L T+ + +++ EVS V V G Sbjct: 441 TAAANVGVASSVSYLDVGLKLDVESTISLQDEVSMKVSLEVSNIVKEVPVTGGGLAYQVG 500 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R A TT+ L G T VLAGL+ DD + +P L+++P +G LF N R +TEI + Sbjct: 501 TRTAATTLALKDGETQVLAGLISDDERTTLSKVPGLAELPWIGKLFINKNVVRNKTEIAL 560 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVED 438 TP +V+ +A + + + E+ Sbjct: 561 LITPRIVRNIARPAKAVSEVPFGTEN 586 >gi|254785258|ref|YP_003072686.1| MSHA type biogenesis protein, MshL [Teredinibacter turnerae T7901] gi|237687142|gb|ACR14406.1| MSHA type biogenesis protein, MshL [Teredinibacter turnerae T7901] Length = 570 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 56/287 (19%), Positives = 110/287 (38%), Gaps = 25/287 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----GSSSGPSKSFAADF 234 S+ + + ++ QV L+ I EV+ + + G G +S S + Sbjct: 278 SAVRDFLERSELSVRRQVVLETKIIEVQLNDGYEAGVNWGAITGALGVASDSSLVMTNND 337 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G K + GVL+ E +L+ LE ++ L+ P ++ ++ Q A G Sbjct: 338 GVKSKIRTTQNLLSGVLNVTRIEDLLNLLETQGNVQVLSSPRISTVNNQKAIIRVGTDEF 397 Query: 295 YKTVS-----------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 + T ++ + + G+ L TP + G + + + VS+ + Sbjct: 398 FVTGITNNTTTTASNIQNSPEVLLDSFFSGIALDVTPQIAEDGDVIIHVHPLVSKVQDQL 457 Query: 344 NAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + VR++D+ V +G +VL GL+++ + P L IP + Sbjct: 458 KDISIGDLDYSLPLALRDVRESDSIVRASNGQVVVLGGLMQETTSDVATKRPFLGDIPGV 517 Query: 395 GALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVEDDA 440 LF+ + +TE+ I P +V + ++R D +A Sbjct: 518 NVLFKGRAKRKVKTELVILMRPIVVDENTWEEQVNRSDRAIEAMSNA 564 >gi|196233728|ref|ZP_03132568.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] gi|196222242|gb|EDY16772.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] Length = 621 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 98/289 (33%), Gaps = 59/289 (20%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------- 242 + QV ++ + EV + + G T SS ++F+ S+ Sbjct: 257 SPTQQVMIEARLVEVTANPKQSYGINWGGTVGSSSTPQTFSYGAPTVPGSQSVNLQTNPT 316 Query: 243 -------------------------GDFSVKG---------------VLDRFSFETVLHA 262 GDF + G +L S L Sbjct: 317 TGQVTPVIVNSQLPQLVTTNGKLTPGDFLMNGETRGGFGDLLASQFAILTVPSMSATLRL 376 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLH 317 L + LA P + + Q A+ ++ + ++G L Sbjct: 377 LNEDSDAEFLAHPRVVTANNQKATIKIVRNQPIPQLNFNEQTAQAVFSGFQDKEFGNTLI 436 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVN------AGDMPSYRVRKADTTVELPSGGTIVLA 371 TP++ I + +Q E+S V P R D+ V + SG T+ + Sbjct: 437 VTPSINKDDFISMSVQPEISNKVADATFTFSGATVTSPVIDKRTLDSNVVIKSGDTLAIG 496 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GLL+D++ + + +P++ IPILG F+ R + + I TP ++K Sbjct: 497 GLLQDEVTKGRTKVPVIGDIPILGYAFQERLNVRTKRNLLIFVTPTIIK 545 >gi|325521797|gb|EGD00533.1| putative type IV pilus secretin [Burkholderia sp. TJI49] Length = 215 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 3/185 (1%) Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G F + F++ + L ALE + ++ P + A G + Y Sbjct: 2 GGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRAKAIVEQGAELPY 61 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + G + V + L P + GR+ L + +V++ +G P+ + Sbjct: 62 Q-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKH 118 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T VE+ GGT+ + G+ + + +PLL KIP+LGALFR+ + +E+ + T Sbjct: 119 VQTRVEVEDGGTVAIGGIYERLRRDDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFIT 178 Query: 416 PFLVK 420 P +V+ Sbjct: 179 PTVVR 183 >gi|46579684|ref|YP_010492.1| type II/III secretion system protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449099|gb|AAS95751.1| bacterial type II/III secretion system protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233480|gb|ADP86334.1| type II and III secretion system protein [Desulfovibrio vulgaris RCH1] Length = 524 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 124/314 (39%), Gaps = 42/314 (13%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAE 204 L G + + ++ + + S Q K++ L+N + Q+ LK I E Sbjct: 203 LEGFLSKDEQNKPVGAVVVDTHTNSLIVQAVEDDLSKIITLVNNLDKPRAQILLKAHIVE 262 Query: 205 VRRDILKQIGFQHSITGSS---------------SGPSKSFAADFGGKF--VSEGG---- 243 RD + +G Q G S SGP+K GG + GG Sbjct: 263 ATRDTARDLGIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVPVIPPGGLSGQ 322 Query: 244 ----DFSVK--------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 +F V G + E L AL+ + L+ P+++ + Q A Sbjct: 323 GFGMNFPVNKAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSPSISTLDNQMA 382 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 +G + Y +++ G V D + L TP V+ + L++Q + E + Sbjct: 383 FTENGEKVPY-VSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLTRTV 441 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P ++ +TT+ + G T+V++GL K+ ++G+P L + +GALF N Sbjct: 442 EGNPFIIKKQTETTLIVQDGETVVISGLTKERSSTRRQGLPYLQDVEGIGALFGNDSKAN 501 Query: 406 EETEIFIAATPFLV 419 + ++ I TP ++ Sbjct: 502 KLEDVLIFITPAIL 515 >gi|289679098|ref|ZP_06499988.1| general secretion pathway protein D [Pseudomonas syringae pv. syringae FF5] Length = 221 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 11/192 (5%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT 308 + + L ALE + L+ P+L ++ Q A G S +T SV Sbjct: 18 NLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVE 77 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSG 365 GV+L P + G + + IQ +VS N A P R T V SG Sbjct: 78 YVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNANNSDANGNPRISTRSVATQVAAQSG 137 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ + Sbjct: 138 QTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSS 195 Query: 426 DLSRPDDHYSVE 437 + D Y + Sbjct: 196 QARQVTDDYRQQ 207 >gi|254459101|ref|ZP_05072524.1| type II and III secretion system protein [Campylobacterales bacterium GD 1] gi|207084372|gb|EDZ61661.1| type II and III secretion system protein [Campylobacterales bacterium GD 1] Length = 551 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 62/288 (21%), Positives = 114/288 (39%), Gaps = 31/288 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADF 234 + + L + QV + V + V + K G +T S++ SK+ F Sbjct: 226 EGYLKKLQDKVQLQVLIDVQLLSVTMEEGKTTGVDWQQLYALQKVTLSANYLSKNNVPTF 285 Query: 235 GGKFVSEGGD-----FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G ++ G S+ V + + V+ L+ + +++ P + ++ Q A T+ Sbjct: 286 TGTEITTAGAQAVNEASLVTVKAGGTLDEVIKFLQTQGDVVSISNPKVLTLNNQPALITA 345 Query: 290 GGQHLYKT------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 G ++ YK V+++T +V + GV+L TP + I L+I +S Sbjct: 346 GTEYFYKIKSETNQQGTGGGVAATTQNDTVQSVFAGVLLDITPEIADDKSITLKINPSLS 405 Query: 338 EPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 E ++ P R+ + V + G I+L GL+ +PLL I Sbjct: 406 ETAQDISQESSANRVMPPDLNRRQLSSVVTVKDGNRIILGGLINTKNVNKSNKVPLLGDI 465 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 P L LF+ ++ E+ I P ++ A +LS + Y D Sbjct: 466 PGLSYLFKYEEMTKQIQELVIVIEPHII-DKANNNLSLAELGYKGITD 512 >gi|148652211|ref|YP_001279304.1| type IV pilus secretin PilQ [Psychrobacter sp. PRwf-1] gi|148571295|gb|ABQ93354.1| type IV pilus secretin PilQ [Psychrobacter sp. PRwf-1] Length = 642 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 99/276 (35%), Gaps = 43/276 (15%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ ++I QV ++V + + K++G + + + + +++ Sbjct: 369 LIKQIDIP-VRQVMIEVRMVSATDNFSKEMGVKWGLLSKGVAHNDDLLVGASDQTLADLK 427 Query: 244 DFSVKGVL---------------------------------------DRFSFETVLHALE 264 FS + L A++ Sbjct: 428 SFSAPNTAYKGRNKSRAGYAITRPDNLNVDLGISNPAGRIAFGLLSMSDLMIDLELSAMQ 487 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 ++ P + + Q+A+ +SG + Y++ S G T+ + + L TP++ Sbjct: 488 AEGRGEVISTPKILTLDKQTATVSSGTKIPYQS-ESEGGGTTTQFEEALLSLQVTPSITP 546 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I L++ E P + + T V + G T+VL G+ ++ I + Sbjct: 547 EDKISLQLNIENGRP--NPVGNGVILIDTDRLITRVTVGDGQTLVLGGIYRNQIFNNTQK 604 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P +P +G LF+ ++ E+ I TP L++ Sbjct: 605 VPFFGDLPYIGRLFKQDLRRNDQQELLIFVTPKLMQ 640 >gi|88799604|ref|ZP_01115180.1| Type II secretory pathway, component PulD [Reinekea sp. MED297] gi|88777689|gb|EAR08888.1| Type II secretory pathway, component PulD [Reinekea sp. MED297] Length = 519 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 104/253 (41%), Gaps = 28/253 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV ++ I EV D + G S + G + +A G + G V GV + Sbjct: 250 QKQVIIEAKIVEVTLDQEYRSGINWSFFNDNFGSGNN-SAGIGLDGNAISGAGGVGGVFN 308 Query: 253 RF----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ST 302 +F ++L L+ ++ L+ P ++ I+ Q A G + T+ S Sbjct: 309 LSLSLDNFTSMLQLLDHQGDVQVLSSPRVSTINNQKAVIKVGTDEFFATIQSITTEVNDD 368 Query: 303 GATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---- 350 + SVTT G+ L TP + + L ++ V+E V D+ Sbjct: 369 DSDSVTTVPAFELEQFFSGIALDVTPQIADDDSVTLHVRPTVTEVVEDTKTLDVGGRSYQ 428 Query: 351 -----YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +R++D+ + SG +V+ GLL+ G+P IP++ LF R ++ Sbjct: 429 LPLAYSNIRESDSIIRAQSGQIVVIGGLLQQKQDLGTTGLPWFQTIPVIRGLFAQDRESQ 488 Query: 406 EETEIFIAATPFL 418 +++E+ I P + Sbjct: 489 QKSELVILLKPTV 501 >gi|153003602|ref|YP_001377927.1| general secretion pathway protein D [Anaeromyxobacter sp. Fw109-5] gi|152027175|gb|ABS24943.1| general secretion pathway protein D [Anaeromyxobacter sp. Fw109-5] Length = 892 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 65/379 (17%), Positives = 129/379 (34%), Gaps = 66/379 (17%) Query: 132 ADSNIRVEMVSDTVV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + + V G V+ D Q+ L + + + ++++ Sbjct: 415 PGAPPSARPGGASDVTASLFSGDVKITADKQQNALLVQA-------SGADFQAIQRLVEK 467 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGF------------QHSITGSSSGPSKSFAADFG 235 L+ QV ++ I EV Q G SS P + + D Sbjct: 468 LD-RPRRQVFVEAVIMEVNLRDETQFGVGAHGIVPVDYRGDEGFIPISSQPGRVSSFDVT 526 Query: 236 GKFVSEGGDFSVKGVLDRF----------SFETVLHALERATAIRTLAEPTLTAISGQSA 285 G + G S ++ AL+ + + L+ P + A + + Sbjct: 527 SAISLGGFLTGLNGPPSGVVEDLLGIKVPSLGVIVQALQSSADVNVLSTPHILASDNEES 586 Query: 286 SFTSGGQHLYKTVSSSTG-----------------------ATSVTTHDYGVVLHFTPTV 322 T G ++ + G + + + L P + Sbjct: 587 EITVGQNVPFQAGYAPAGLGNLLTGTTATTSTLGLGGLSSLVAPIQRQNVELRLKIKPQI 646 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G I L I+ E +E ++ + P+ R A T + TIV+ GL+++ + Sbjct: 647 NEGGNIRLTIE-EQTEEIVDRDPQLGPTTAKRTAKTQIVAKDQSTIVIGGLIQERNVRSV 705 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 IP+L +PILG LFR+S ++ T + + TP++++ D+ + + + Sbjct: 706 RKIPVLGSLPILGWLFRDSTNTKQRTNLLLFLTPYIIRD--------ETDYRRIYERKRK 757 Query: 443 FFFNRVNKIYGPKEASEVE 461 V + YG + + +V Sbjct: 758 EQQEFVEQFYGRQPSYQVA 776 >gi|22127358|ref|NP_670781.1| hypothetical protein y3484 [Yersinia pestis KIM 10] gi|108809090|ref|YP_653006.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua] gi|108810716|ref|YP_646483.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516] gi|145597787|ref|YP_001161863.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F] gi|167466374|ref|ZP_02331078.1| hypothetical protein YpesF_00430 [Yersinia pestis FV-1] gi|229837375|ref|ZP_04457538.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|229840587|ref|ZP_04460746.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842863|ref|ZP_04463015.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229900911|ref|ZP_04516035.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|294502759|ref|YP_003566821.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003] gi|21960442|gb|AAM87032.1|AE013951_7 hypothetical [Yersinia pestis KIM 10] gi|108774364|gb|ABG16883.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516] gi|108781003|gb|ABG15061.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua] gi|145209483|gb|ABP38890.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F] gi|229682250|gb|EEO78342.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|229690130|gb|EEO82187.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229696953|gb|EEO87000.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705498|gb|EEO91508.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|262360791|gb|ACY57512.1| hypothetical protein YPD4_0603 [Yersinia pestis D106004] gi|262364736|gb|ACY61293.1| hypothetical protein YPD8_0603 [Yersinia pestis D182038] gi|294353218|gb|ADE63559.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003] gi|320016744|gb|ADW00316.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 284 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 110/271 (40%), Gaps = 26/271 (9%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 K+I + + I++V ++ V VS AD + ++ ++ K G A L Sbjct: 30 ANAKQIYLPIGGSHIIKVQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNK 89 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL- 163 + + + +L+ I +R DS I + + ++ +L G T + + Sbjct: 90 NHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIASIV 149 Query: 164 ----SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 + + + +N + V+N + + +QV +K+TI E+ +D + IG + Sbjct: 150 GEATASKKEKERETSYQSNPEYQGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNS 209 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 S++G + + S T++HA+ + LAEP L+ Sbjct: 210 IKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEPNLSV 250 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 +SG+ ASF GG+ VS++ SV Sbjct: 251 LSGEYASFLVGGEIPI--VSTNQNGISVELK 279 >gi|222823425|ref|YP_002574999.1| type II protein secretion system D protein CtsD [Campylobacter lari RM2100] gi|222538647|gb|ACM63748.1| putative type II protein secretion system D protein CtsD [Campylobacter lari RM2100] Length = 463 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 114/281 (40%), Gaps = 24/281 (8%) Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 Y + +K + LN + QV + V+I V + G + D Sbjct: 190 YELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQ------DLAFKLNGDDN 243 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 +++GG ++ + + +L+ L+ L+ P L A++ Q A + G Y Sbjct: 244 DFIINKGGVKNIN-LKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINY 302 Query: 296 KTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA- 345 + SS G + TT G++L+ P + +I LRI +S+ V+ Sbjct: 303 QVKESSKGTENGTTISETYNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNH 362 Query: 346 ------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 P +K T VE+ G T++L GL+ + + LSKIP+ GALF+ Sbjct: 363 RQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKNTISNHNEVSALSKIPLFGALFQ 422 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 + + +EI P L++ + LS + + EDD Sbjct: 423 GKQNLEDISEIVFIIKPSLIR-ADKKVLSLKELGFEHEDDM 462 >gi|257459465|ref|ZP_05624574.1| type II and III secretion system protein [Campylobacter gracilis RM3268] gi|257442890|gb|EEV18024.1| type II and III secretion system protein [Campylobacter gracilis RM3268] Length = 502 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 117/304 (38%), Gaps = 27/304 (8%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 +V+ +G + + + + + + ++Q A + ++ + QV L V I Sbjct: 180 SVLNNGTEKYVAVAPIINQNAGLVTVTAMKSQIAR--VDRYLSGMQKRLSRQVLLDVNII 237 Query: 204 EVRRDILKQIGFQHS---------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 V + G S + G + S + S+ G F Sbjct: 238 SVELNNEYTTGIDWSKFQLGFNTYVGGDPTKLSGYHIDNGNRGKASDTHGTWTIGANLNF 297 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311 + + +++ LE + ++ P +T ++ Q A + G Y S++TG + D Sbjct: 298 NIDGLINFLETKGKTKIISSPKVTTMNNQPAIISVGDTINYVLKSTTTGDYQGGDTQSDD 357 Query: 312 -----YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--------GDMPSYRVRKADT 358 G++L+ P + RI LRI +S + P +K + Sbjct: 358 QYSIFVGILLNILPEISDDNRIMLRINPSLSSLKYAEDNVRKENGRRDIAPDTLQKKLSS 417 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + G T++L GL+ + +P+L++IP++G LF+++ +E+ TP + Sbjct: 418 VVWVDDGDTVILGGLIGATKSKNNTRVPVLAEIPLIGNLFKSTADILSTSELIFVVTPHI 477 Query: 419 VKPV 422 + Sbjct: 478 IDNT 481 >gi|281354921|ref|ZP_06241415.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281317801|gb|EFB01821.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 794 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 107/251 (42%), Gaps = 14/251 (5%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----GK 237 K +++ L++ QV ++ I E+ + G Q + G S +F Sbjct: 486 KALLDRLDVV-PAQVLFQILIVEITLTDSNEFGLQFNNVSYGGGTGVSTGTNFNDIGMND 544 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 SEG + + L AL I+ ++ P L S +A G Sbjct: 545 SSSEGFKLGIFDKDNPEENFGYLRALAGRDNIKVISSPQLLVTSNTTAKIQVGQDVPILT 604 Query: 296 ---KTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDM 348 T S+TG + T + G++L P V S I ++I+ +VSE + +A D Sbjct: 605 QDLTTSDSATGNVTRSYTYEETGIILSLIPQVTSTDLISMQIEQKVSEAIKNTITSATDT 664 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P R +T + + +G T+V+ G++++ + +P+++ IP L F N+ + E T Sbjct: 665 PVISTRVLNTAMTIANGKTMVIGGMIQEKNNDRLQSVPIIADIPFLRRFFGNTNQSVERT 724 Query: 409 EIFIAATPFLV 419 E+ + T ++V Sbjct: 725 ELLVLVTGYIV 735 >gi|297171846|gb|ADI22835.1| type II secretory pathway, component PulD [uncultured nuHF2 cluster bacterium HF0500_31B05] Length = 815 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 121/287 (42%), Gaps = 27/287 (9%) Query: 174 NQYANSSSKKVMNLLNI---AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230 ++ + +K++N+L+ Q+ ++ + EV + L+ IG + +TGS + SF Sbjct: 254 DKNEPEALEKLINVLHTQIDVPAQQIFIEALVIEVNTNRLRDIGVE--LTGSKNHVQGSF 311 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 G + FS + D S + L AL L+ P++ ++ + A G Sbjct: 312 ERSEGNPLTTL--LFSRESFTDFLSLKGKLEALVEIGDAEILSSPSVLVLNDRQARVQVG 369 Query: 291 GQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPV------ 340 Q ++ T T+V G+VL+ P + + ++I+T +S Sbjct: 370 RQIPIVRSTTPTAGTTVKGIEYFPIGIVLNLRPRINLDQSQVTIQIETIISSISTESATK 429 Query: 341 ----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + + P R +T V + G ++ GLL + + K G+P LS +P LG Sbjct: 430 LEDGVSEDISFAPIVDNRLVETYVRVADGTPFIIGGLLSTERLESKVGVPFLSAVPFLGH 489 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 LF R + E+ + TP +V P+ R+ S Y + D+ F Sbjct: 490 LFSRKRVENTQREVIVVITPHIV-PLETRNFS-----YLIPKDSDLF 530 >gi|74316782|ref|YP_314522.1| general secretion pathway protein D [Thiobacillus denitrificans ATCC 25259] gi|74056277|gb|AAZ96717.1| general secretion pathway protein D [Thiobacillus denitrificans ATCC 25259] Length = 554 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 60/284 (21%), Positives = 111/284 (39%), Gaps = 44/284 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------------ITG 221 ++ + +A E QV L+ I EVR Q G + +TG Sbjct: 250 ERFLKATALAVERQVMLEAKIIEVRLSDGFQTGINWAALHEGRHKYSSGADAGNFNLVTG 309 Query: 222 SSSGPSKS-FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 ++SG S + + GG F + SF +++ LE A+ L+ P + A+ Sbjct: 310 AASGSLGSVLGSGLPAASGTSGGIFGLA--FQTKSFAALINFLETQGAVHVLSSPRIAAL 367 Query: 281 SGQSASFTSGGQHLYKTVSSST-----------GATSVTTHDYGVVLHFTPTVLSPGRIG 329 + Q A G + T S+T + ++ G+ L TP + GRI Sbjct: 368 NNQKAVLKVGTDDFFVTNVSTTSNTGGAGTTTTPSVTLQPFFSGIALDVTPQIDERGRIT 427 Query: 330 LRIQTEVSEPVIGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 L ++ VS + D + S V + D+ V++ G + + G++K Sbjct: 428 LHVRPSVSVVTEKIKNIDAGAAGSLTLPLASSAVSETDSVVQVEDGRIVAIGGMMKQSFD 487 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +P + ++P+LG F N+ + ++E+ I P ++ Sbjct: 488 DSANRVPAIGRVPLLGYFFGNTARSASKSELVILIKPTVIDSQE 531 >gi|238025976|ref|YP_002910207.1| type II/III secretion system protein [Burkholderia glumae BGR1] gi|237875170|gb|ACR27503.1| Type II/III secretion system protein [Burkholderia glumae BGR1] Length = 649 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 78/474 (16%), Positives = 155/474 (32%), Gaps = 93/474 (19%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79 P + P++ + A + ++IS+ L + + V D Sbjct: 174 GPPITMPAPVRLSAAPASVHGSHGLHGHRRISLDLQQA-------PLAAVF-------DA 219 Query: 80 VVH-SPRTMYLFGKNVGQANV------------ILIGHDGKQMLNL--DILIERDIAHLE 124 + +++ L G+ G A + L+ +G M I + +A L Sbjct: 220 FARFTGQSIVLSGRVQGAATLRLRDVPWRDAFDALLDANGLAMARRGGVIWVAP-VAELA 278 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 R +++ R + ++R + A L+ Q ++ + + Sbjct: 279 ARERARF-ETHARTAALEPLASRAFVLRYPRAKDVARLLTGGAAGQRVLSRRGSVLADPR 337 Query: 185 MNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--- 223 NLL + QV ++ I E R +++G + ++ S+ Sbjct: 338 TNLLFVTDLDGRLAQIAALLAQLDRPSRQVLIEARIVEGERGFSRELGARLALRSSAWGG 397 Query: 224 ---------------------------SGPSKSFAADFGGKFV-----------SEGGDF 245 G + GG+ + + Sbjct: 398 SRAGAGAGGSGGSDGGAGGAAMPDSNPGGAATGIVGGPGGRLLDLSARPLAGFEAATAGL 457 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 ++ + L ALE R ++ P + A G + Y+ G + Sbjct: 458 TLFVAGASRLLDLELSALEAQGRGRIVSSPRIVTADRAPALIEQGTELPYQ-AKVGLGVS 516 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 V + L P + G + L + +AG P+ + T VE+ +G Sbjct: 517 GVQFRRATLKLEVEPQITPEGHVVLDLDVAKDSVGESTDAG--PAIHTKHVRTRVEIENG 574 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GT+ + G+ + D + +P+L KIP+LGALFR+ + E+ + TP +V Sbjct: 575 GTVSIGGIYESDRRDDVTRVPVLGKIPMLGALFRHRARRQRTAELVVYITPRVV 628 >gi|162457505|ref|YP_001619872.1| general secretion pahtway protein D [Sorangium cellulosum 'So ce 56'] gi|161168087|emb|CAN99392.1| general secretion pahtway protein D [Sorangium cellulosum 'So ce 56'] Length = 864 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 54/296 (18%), Positives = 103/296 (34%), Gaps = 55/296 (18%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+ QV ++ I +V G + +G + + +GG + + Sbjct: 438 RAVIDELDEP-RRQVFIEAVIMDVNVSRSLDFGIGYHAGAPFNGLNPDDSVVYGGNNIRQ 496 Query: 242 ----------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G + + + +F VLHAL + LA P + A Sbjct: 497 SVIGLPAQLGALALGIKGPAITGSNNILGTGISIPAFGVVLHALAQDGDSNVLATPHILA 556 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVT------------------------------- 308 +A + G +T G + Sbjct: 557 TDNVAAEISIGQNIPLQTNVGGGGLNQLASLAGGAGAAAGGLGGLAGLLGGLGGVGGTAA 616 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGT 367 D G + P V ++ L + E+S+ + R A TT+ + T Sbjct: 617 RQDVGTKIKVVPHVNDSDQVRLELSEEISDAGAPLEGALGAIPINKRTASTTLVVRDQQT 676 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +V+ GL++D + + IP+L IP+LG LFR + +T + + TP++++ Sbjct: 677 VVIGGLMRDGMTTSETKIPVLGDIPVLGFLFRQRVKTKTKTNLLLVLTPYVIRDQD 732 >gi|257454916|ref|ZP_05620164.1| fimbrial assembly protein PilQ [Enhydrobacter aerosaccus SK60] gi|257447626|gb|EEV22621.1| fimbrial assembly protein PilQ [Enhydrobacter aerosaccus SK60] Length = 776 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 102/281 (36%), Gaps = 42/281 (14%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ + +++ ++IA QV ++ I K++G + I + +++ Sbjct: 497 SNIRDLISKIDIA-VKQVMIEARIVSATDTFSKELGVKWGILSQGAASNRNLLVGGNLST 555 Query: 239 VSEGGDFSVK------------GVLDRFSFETVL-------------------------H 261 + ++ G+ + L Sbjct: 556 IDSLKTYTTATNSDGTTYPVYSGITAANNLSVNLGATNAAGSIAFGLLSISDLLLDLELS 615 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 A++ ++ P + Q+A SG Q Y+ S+S GATS + + + L TP Sbjct: 616 AMQADNKGEVISSPKVLTADKQTARIMSGTQIPYQEASAS-GATSTSFVEAALSLEVTPN 674 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + GRIG+ + E P I + T V + G T+VL G+ K+ + Sbjct: 675 ITPEGRIGMDLSIENGSPTI---VNGATAISKDSIKTNVVVDDGQTVVLGGVFKNTLGND 731 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 IP L +P + F+ + + + E+ I TP LV Sbjct: 732 VTKIPFLGDLPYVDRFFKRTSKSNNKQELLIFVTPKLVNDT 772 >gi|290968265|ref|ZP_06559808.1| bacterial type II and III secretion system protein [Megasphaera genomosp. type_1 str. 28L] gi|290781747|gb|EFD94332.1| bacterial type II and III secretion system protein [Megasphaera genomosp. type_1 str. 28L] Length = 394 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 87/455 (19%), Positives = 159/455 (34%), Gaps = 73/455 (16%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKI---SIGLNKV 57 M+ R ++ + P A + +A + + G I S+ N Sbjct: 1 MKTCVRVLAIGIAAISWYM-PVSALQVRVSDAPIRTVLEGLAKSGNLNLIIDDSVQGNMT 59 Query: 58 IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD---GKQMLNLDI 114 + L Q V + + S Y G +G +I G + GKQ + Sbjct: 60 LHLDHVTPAQAV--------EAIAASQNLFYDTGSPIG---IITAGRNEEKGKQYYTWQL 108 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 A + ++ + + ++ S+TVV+ T +++Q +L + ++ Sbjct: 109 KNTTPEAVIRA-IQAVVPAAAVKSYADSNTVVVG---STKREAQLVNKLVQQLDKKTA-- 162 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 QV + V I + R L + G + SG F Sbjct: 163 --------------------QVDVAVRIVSLDRKALHKRGIEWDWQPFGSGSQTVF---- 198 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 S+ + AL LA P + A +G++A G + Sbjct: 199 --------------------SWLGQIQALSEQGKAEILASPHIMASNGKAAQILIGDRVP 238 Query: 295 YKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 + G S++ + GV L++TP + G + I+ EVS PV V Sbjct: 239 VLKEHLANGEKTASISYEEAGVKLNYTPYIHQDGSVTASIEAEVSTPVW-VPEMKAYRIS 297 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+A T V + T+V+ GL+ + + +PLL IP++G LF++ +ETE+ I Sbjct: 298 TRRAKTIVRMKPDKTLVIGGLIGKEEMEHFRKVPLLGDIPLVGKLFQSRYKTAKETEVVI 357 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 V+ ++ + + +D K Sbjct: 358 MLQARPVQDEEQNTVA--TELFPPIEDEKCLLAGN 390 >gi|254443244|ref|ZP_05056720.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] gi|198257552|gb|EDY81860.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] Length = 582 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 11/209 (5%) Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 S D + G + S V F VL AL+ R ++ PT+ ++ Q A Sbjct: 352 SSAVKDLYSLVDTSGLNRSSSAVFTADQFGFVLSALKEQGGSRLVSNPTVVTLNNQEAMI 411 Query: 288 TSGGQHLYK-----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI- 341 + G Q + + D G++L TP+V G I +++ EVS Sbjct: 412 SVGEQFPIPNYQYNEETGGFEVSGFEFKDIGIILKVTPSVNHTGLITMKVVPEVSSRTGE 471 Query: 342 ----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G +P R+ +T + L G T+ + GL++ + K +P+L K+P LG L Sbjct: 472 RSFGGAGNASIPIISTRRTETRIALKDGFTMGIGGLMESTGTEDKNHVPVLGKVPGLGRL 531 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426 F++ + + + I T ++ P D Sbjct: 532 FKHESKSETKRNLLIFITARIL-PSEEAD 559 >gi|283781428|ref|YP_003372183.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283439881|gb|ADB18323.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 1314 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 76/382 (19%), Positives = 142/382 (37%), Gaps = 59/382 (15%) Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI---ADSNIRVEMVSDTVVLHGMVRTI 154 +++ G G + IL+ D + + V + ++ + + Sbjct: 704 SIVASGTTGDLNVVYQILVRLDEGDIRQRVTTVYRLRNSPAADVATAINELLTNQRDLSQ 763 Query: 155 QDSQRAVELSE-----TFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTIA 203 Q+++ + + + + N S++ + + + V ++V IA Sbjct: 764 QNAELTTQFEQFEREVIVVPEIVSNSLIVSATPRYFDEIKKVVEDLDRRPPMVIIQVMIA 823 Query: 204 EVRRDILKQIGFQHSIT---------GSSSGPSKSFAADFGGKFVSEGGDFSVKG----- 249 EV ++Q+G + I GS P + A S SV G Sbjct: 824 EVLLSDVEQLGVELGIQDSLLFDRGIGSVGFPFNNVALGNNSDATSLATRESVAGQGLSS 883 Query: 250 -----------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 S ++ AL+++ ++ ++ P + + Q A G + Sbjct: 884 FGVGRTDPTLGYGGLVLSASSESVSVLVRALQQSRRLQVISRPQVQTLDNQPAFVQVGAR 943 Query: 293 HLYKTVSSSTGATSVTT---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE--------PVI 341 T S T ++ + G++L TP G I + I E SE P+ Sbjct: 944 VPRITSSQLTVNGTINNTVLENVGIILGVTPRTAPDGMIVMEIDAEKSELGPEAEGIPIS 1003 Query: 342 GVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + GD+ P R+ A TTV SG T+++ GL+ + Q+ +P L IP+LG LF Sbjct: 1004 INSNGDVIRSPQIRIATAQTTVSARSGQTVIIGGLITKNQQESTRRVPYLGDIPVLGRLF 1063 Query: 399 RNSRFNREETEIFIAATPFLVK 420 R + E E+ I TPF+++ Sbjct: 1064 RFDSVSDERRELLIILTPFIMQ 1085 >gi|322418671|ref|YP_004197894.1| type II and III secretion system protein [Geobacter sp. M18] gi|320125058|gb|ADW12618.1| type II and III secretion system protein [Geobacter sp. M18] Length = 862 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 67/327 (20%), Positives = 132/327 (40%), Gaps = 39/327 (11%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 VRT+ ++ E ++K++ ++ + V L+V + E+ + Sbjct: 286 VRTMLQVKKIYVNEEANALVIRDTPEVVEVARKILEANDVPDAE-VLLEVEVFELSKAGT 344 Query: 211 KQIGF---QHSITGSSSGPSKSFAADFG----------------GKFVSEGGDFSVKGVL 251 + G ++ + +GP F +D + FSV+G Sbjct: 345 ETFGLLLSSYAASMGVTGPQGKFLSDALSTTTTTSTTSGTTTTVADVSNLLNVFSVRGYN 404 Query: 252 DRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--TSVT 308 + + + + TL+ P + + + A F G + T SS++ +V Sbjct: 405 GYLTVPSATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRVPITTTSSTSTGTSVNVQ 464 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELP 363 D GV ++ PT+ + +++ EVS V A + + R DT + L Sbjct: 465 YVDVGVKVNAEPTIQLNNEVVIKLGLEVSSILGREKVGTDQATTVVTIGTRNLDTVLSLK 524 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G T ++ GL++ K+ + LL IP+LG LF N+ + +++E+ +A TP +V+ V Sbjct: 525 DGETSIIGGLMQKSETDSKKKVFLLGDIPVLGNLFSNTGKSNDKSELLLAITPRIVRGVT 584 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNK 450 + E+D AF+ R ++ Sbjct: 585 V-----------PENDVAAFWSGREDE 600 >gi|83859862|ref|ZP_00953382.1| General (type II) secretion pathway (GSP) D protein [Oceanicaulis alexandrii HTCC2633] gi|83852221|gb|EAP90075.1| General (type II) secretion pathway (GSP) D protein [Oceanicaulis alexandrii HTCC2633] Length = 622 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 76/362 (20%), Positives = 140/362 (38%), Gaps = 28/362 (7%) Query: 85 RTMYLFGKNVGQ-ANVILIGHD-------GKQMLNLDILI-ERDIAHLEMTLRRFIADSN 135 + +F KN ++I + + D L +R + ++ Sbjct: 232 NQILVFAKNEDSLGHLIATARRLEEAAEHEDVTRSYVYQVRNTDAEELANIIRTVLGETG 291 Query: 136 IRVEMVSDTVVL-HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194 ++T + S+ AV+ L +G N+ + +++ L+ + Sbjct: 292 RSSSTGAETTAGETAGASSAVSSRLAVDTFGNRLIFTG-NRNEYDNLARLLGQLDTPVSE 350 Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 V ++VTIAEV ++G + + + G + ++D Sbjct: 351 -VLVEVTIAEVIFSDTTRLGVEFFLN------TLGGDVQVGTSDGLGLSSGGLSAIVDAG 403 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGAT---- 305 + A + I L+ P + A SG+SA G T + +G+T Sbjct: 404 QLDIEAAARSTNSNINVLSTPRIVARSGESAEVQVGTDVPIITSQRAANTQDSGSTDILQ 463 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPS 364 SV+ GV+L P V S RI L I EVS N A P R+ +++ L Sbjct: 464 SVSYRSTGVLLTVEPRVYSNNRIDLTIMQEVSSADDNPNQAIASPIISNRRMTSSITLQD 523 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T VL GL+ + + + G+PL+ IP+LG +F+ F+ ++ + + TP+++ Sbjct: 524 GQTAVLGGLMSETVNRGSTGVPLVQDIPVLGNIFKTETFSNDQRVLLVLVTPYILNDRND 583 Query: 425 RD 426 R Sbjct: 584 RQ 585 >gi|255349063|ref|ZP_05381070.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis 70] gi|255503601|ref|ZP_05381991.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis 70s] gi|255507281|ref|ZP_05382920.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis D(s)2923] gi|296439006|gb|ADH21159.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis E/11023] Length = 921 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225 ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636 Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254 S A + G + G + G++ Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309 + +L AL++ + P + A Q ASF G ++T S+ TG+ + + Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T T+ + L+I+ +SE + P A T +++P G +V Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +++ R + P+ A E + Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902 >gi|15605407|ref|NP_220193.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis D/UW-3/CX] gi|3329125|gb|AAC68269.1| probable Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis D/UW-3/CX] gi|297748805|gb|ADI51351.1| General secretion pathway protein D [Chlamydia trachomatis D-EC] gi|297749685|gb|ADI52363.1| General secretion pathway protein D [Chlamydia trachomatis D-LC] Length = 921 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225 ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636 Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254 S A + G + G + G++ Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309 + +L AL++ + P + A Q ASF G ++T S+ TG+ + + Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T T+ + L+I+ +SE + P A T +++P G +V Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +++ R + P+ A E + Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902 >gi|166154891|ref|YP_001653146.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|165930879|emb|CAP06441.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 921 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225 ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636 Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254 S A + G + G + G++ Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309 + +L AL++ + P + A Q ASF G ++T S+ TG+ + + Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T T+ + L+I+ +SE + P A T +++P G +V Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +++ R + P+ A E + Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902 >gi|166154016|ref|YP_001654134.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis 434/Bu] gi|301335216|ref|ZP_07223460.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis L2tet1] gi|165930004|emb|CAP03487.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis 434/Bu] Length = 921 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225 ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636 Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254 S A + G + G + G++ Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309 + +L AL++ + P + A Q ASF G ++T S+ TG+ + + Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T T+ + L+I+ +SE + P A T +++P G +V Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +++ R + P+ A E + Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902 >gi|237805025|ref|YP_002889179.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis B/TZ1A828/OT] gi|231273325|emb|CAX10240.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis B/TZ1A828/OT] Length = 921 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225 ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636 Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254 S A + G + G + G++ Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309 + +L AL++ + P + A Q ASF G ++T S+ TG+ + + Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T T+ + L+I+ +SE + P A T +++P G +V Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +++ R + P+ A E + Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902 >gi|330963696|gb|EGH63956.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 174 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 66/162 (40%), Positives = 93/162 (57%), Gaps = 5/162 (3%) Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPV 340 ASF +G + V + + YGV L F+PT+L GRI L+++ EVS Sbjct: 1 ASFLAGSEVAVP-VPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTST 59 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + VN +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG LFR+ Sbjct: 60 LDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRS 119 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 RF R ETE+ I TP+LV+PV R ++ P D A A Sbjct: 120 KRFQRNETELVILITPYLVEPVKARVVATPLDKQRAASTASA 161 >gi|255311500|ref|ZP_05354070.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis 6276] gi|255317802|ref|ZP_05359048.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis 6276s] Length = 921 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225 ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636 Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254 S A + G + G + G++ Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309 + +L AL++ + P + A Q ASF G ++T S+ TG+ + + Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T T+ + L+I+ +SE + P A T +++P G +V Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +++ R + P+ A E + Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902 >gi|323957549|gb|EGB53264.1| general secretion pathway protein D [Escherichia coli H263] Length = 615 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 61/301 (20%), Positives = 108/301 (35%), Gaps = 44/301 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612 Query: 407 E 407 Sbjct: 613 N 613 >gi|206602610|gb|EDZ39091.1| Putative type II secretion system protein D [Leptospirillum sp. Group II '5-way CG'] Length = 615 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 68/340 (20%), Positives = 122/340 (35%), Gaps = 49/340 (14%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 +E TLR+ I + + + + TV + G V+ + +QR +++ L + Sbjct: 276 DKMEGTLRKMIPKATVSADSKAQTVSVKGTVQDVFQAQRYLDIVRDQLRRE--------- 326 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGK 237 V ++ IAE+ G + S + A Sbjct: 327 ---------------VFFRIDIAEIDLTDKDAYGINWNALAHGVFNSTLALTGAGAGNAG 371 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 S GG + G F V+ ALE + + +P + +SGQ S + Y Sbjct: 372 LASTGGVTTPYGA--SFGSAAVIQALETIGRVHIINQPYVGTVSGQPVSLNATTDIPYLQ 429 Query: 298 V----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR-------IQTEVSEPV 340 S++ + G+ L TPT L +I + +Q V+ + Sbjct: 430 GEYPFFAGGLSSATETIPQIGYVPVGINLEVTPT-LEGDQIHMHGTVVVNSLQQFVTIDI 488 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G+ P R T + G T+V+ GL+ + + +P L +IP+L LF Sbjct: 489 KGIGTFQNPEVNSRSQTTEITARDGQTVVIGGLMANTKNKTFWTVPFLGQIPVLKWLFSG 548 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 + ++ TE+ + TP + + R S D + D Sbjct: 549 YSYKKQVTELVVIITPEIRR--TPRLSSPRTDDFLNPDSP 586 >gi|171462916|ref|YP_001797029.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192454|gb|ACB43415.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 209 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 8/192 (4%) Query: 233 DFGGKFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFT 288 D GG +S +V L + + L ALE + L+ P + A+ Sbjct: 20 DLGGPGLSSFNPATVAATLVSRNASRILQAELSALESEGQGKILSNPRIMTGDQVKATIE 79 Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 G + Y+T S+ + + + L P + G+I + + +++ +G+ Sbjct: 80 LGTELPYQT--SNQNGSKLQFRKANLRLEALPKIHPDGKISMLV--GINKDTVGMKTEQG 135 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + + + V + +GGT ++ G+L+ ++ + IPLL IP++G FR+ +++T Sbjct: 136 YAIDTKSLSSEVTVENGGTAIIGGILQTTEREDEVKIPLLGDIPLIGHFFRHKSKLQDKT 195 Query: 409 EIFIAATPFLVK 420 E+ + TP ++ Sbjct: 196 ELLVFLTPTVLD 207 >gi|289525718|emb|CBJ15199.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis Sweden2] gi|296435288|gb|ADH17466.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis E/150] Length = 921 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225 ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636 Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254 S A + G + G + G++ Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309 + +L AL++ + P + A Q ASF G ++T S+ TG+ + + Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T T+ + L+I+ +SE + P A T +++P G +V Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +++ R + P+ A E + Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902 >gi|76789414|ref|YP_328500.1| general secretion pathway protein D [Chlamydia trachomatis A/HAR-13] gi|237803104|ref|YP_002888298.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis B/Jali20/OT] gi|76167944|gb|AAX50952.1| general secretion pathway protein D [Chlamydia trachomatis A/HAR-13] gi|231274338|emb|CAX11133.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis B/Jali20/OT] Length = 921 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225 ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636 Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254 S A + G + G + G++ Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309 + +L AL++ + P + A Q ASF G ++T S+ TG+ + + Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T T+ + L+I+ +SE + P A T +++P G +V Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +++ R + P+ A E + Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902 >gi|238763779|ref|ZP_04624738.1| Protein transporter HofQ [Yersinia kristensenii ATCC 33638] gi|238698081|gb|EEP90839.1| Protein transporter HofQ [Yersinia kristensenii ATCC 33638] Length = 425 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 6/207 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + R+ L+++G + + +S+ F + + F+V + Sbjct: 217 QQVQLAAHIVTISRENLQELGVRWGMGEPQPTSALRMSDFNVNLPLPTSAVSAGFNVARI 276 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + E+ + +A P L Q+AS G Y G T++ Sbjct: 277 GGRLLELELSAL-EQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGTTTIEFK 335 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P + + GD + ++ T + + G TI Sbjct: 336 EAVLGMEVTPKILRNGKITLNLKISHNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETI 395 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILG 395 VL G+ + Q +P+L+ IP LG Sbjct: 396 VLGGIFQQKNSQGVNKVPMLADIPWLG 422 >gi|296437143|gb|ADH19313.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis G/11222] Length = 921 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225 ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636 Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254 S A + G + G + G++ Sbjct: 637 NTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309 + +L AL++ + P + A Q ASF G ++T S+ TG+ + + Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T T+ + L+I+ +SE + P A T +++P G +V Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +++ R + P+ A E + Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902 >gi|330863522|emb|CBX73638.1| general secretion pathway protein D [Yersinia enterocolitica W22703] Length = 577 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 12/237 (5%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----SKSFAADFGGK 237 +V+ L+I QV ++ I E + +G Q + + S + Sbjct: 340 DQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKTNSIQTNNNSG 398 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + +++ + AL + LA P++ + A F G + T Sbjct: 399 NPIPMMMAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 458 Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PS 350 + +T S++ GV+L P + + L I+ EVS + Sbjct: 459 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSV 518 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + R + V + SG T+V+ GLL I ++ +PLL IP +G LFR S+ ++ Sbjct: 519 FNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQSKERLKK 575 >gi|226327391|ref|ZP_03802909.1| hypothetical protein PROPEN_01261 [Proteus penneri ATCC 35198] gi|225203917|gb|EEG86271.1| hypothetical protein PROPEN_01261 [Proteus penneri ATCC 35198] Length = 367 Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 60/258 (23%), Positives = 100/258 (38%), Gaps = 28/258 (10%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFAADFGGKFVS 240 L + QV + I +D L ++G Q + +S+ S + +A Sbjct: 112 LRDTPQQQVHITAHIVSSSQDALNELGTQWGLQALKTQTEATSTTVSNTISATSSLNSAL 171 Query: 241 EGGDFSVKGV-----------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 S + ++ E L ALE+ + +A P LT + Sbjct: 172 STPSLSALSLHQNTKNPLHYIAFNIARINGRLLELELSALEQEKQLSIIASPRLTTAHEK 231 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342 +AS G + Y VS T V + + + TP + +I L ++ + P I Sbjct: 232 TASIKQGTEIPY--VSRDNEITQVQFKEAVLGMEVTPIIQRNKKIRLILKISQNTPGIAL 289 Query: 343 -VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + S ++ T V + G TI+L G+ + Q+ IP LS IP+LG LF + Sbjct: 290 VQSGSEHLSIDKQEISTEVAIRDGETIMLGGIFQQKQQEHTAKIPFLSSIPLLGVLFSHK 349 Query: 402 RFNREETEIFIAATPFLV 419 R E+ I TP L+ Sbjct: 350 RDQHSRHELVIFITPKLI 367 >gi|303251572|ref|ZP_07337746.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252115|ref|ZP_07534014.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649570|gb|EFL79752.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860415|gb|EFM92429.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 221 Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 5/198 (2%) Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 +++ + ++ AL+ + LAEP ++ +SG++A GG+ + G SV Sbjct: 2 ALVNSNNLNVLISALDNQNNGKILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVL 60 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGG 366 ++G+ L V RI L + VS + +P + R++ +T E+ +G Sbjct: 61 YKEFGIKLAVGAKVQKSDRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGE 120 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + +++GLL + + +P+L IPILGA FRN+ +RE E+ + AT LVKPV Sbjct: 121 SFIISGLLNKQDIEGIKKVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQ 180 Query: 427 LSRPDDHYSVEDDAKAFF 444 + P + + FF Sbjct: 181 VLYPT--FENTGTMERFF 196 >gi|17548695|ref|NP_522035.1| putative general secretion pathway GSPD-related protein [Ralstonia solanacearum GMI1000] gi|17430943|emb|CAD17625.1| putative general secretion pathway gspd-related protein [Ralstonia solanacearum GMI1000] Length = 698 Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 83/409 (20%), Positives = 147/409 (35%), Gaps = 49/409 (11%) Query: 51 SIGLNKVIILQVPVDVQD-VLVSDPTKADVV--VHSPRTMYLFGKNV--GQANVILIGHD 105 S G+N ++ V D++ V + D + + S + K + G +I Sbjct: 143 STGINFILDKDVRPDLKTTVFIRQAKLEDALDLILSTTQL---NKKMMNGSTILIYPNTP 199 Query: 106 GKQMLNLDILI------ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 KQ D+++ D L+ + + ++ ++ VV+ +S Sbjct: 200 EKQRDYQDLVVRAFYLTNADAKQTGAMLKAMLKIRDPYIDERTNMVVIR-------ESPD 252 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 V L+E + RN +V+ + L Q+G Q+ Sbjct: 253 VVRLAERLVELQDRNDSEVVLEVEVLEV------------------SSTKLTQLGVQY-- 292 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 +S +A + + VL+ LA P + A Sbjct: 293 --PNSFTLTPLSATGASSLTLSDFKGLNSDRIGVSTPNVVLNLRRELGDTDLLANPKIRA 350 Query: 280 ISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + + A G + T +S++ + SV D G+ L P++ + ++I EV Sbjct: 351 KNHEKAKILIGDKLPVITTTSTSTGFVSESVQYIDVGLKLEVEPSISPDDEVSMKINLEV 410 Query: 337 SEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 S + R A+T ++L G T +LAGL+K IP L IP+ Sbjct: 411 SSLTNQITTRSGTVAYQIGTRTANTVLKLHDGETQLLAGLIKTQQTSSAARIPGLGDIPL 470 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 LG LF + N EI ++ TP +VKP D + + E +A+A Sbjct: 471 LGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPDTNFMEFWSGTETNARA 519 >gi|261854769|ref|YP_003262052.1| general secretion pathway protein D [Halothiobacillus neapolitanus c2] gi|261835238|gb|ACX95005.1| general secretion pathway protein D [Halothiobacillus neapolitanus c2] Length = 725 Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 68/274 (24%), Positives = 106/274 (38%), Gaps = 38/274 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + V++ L+I QV ++ IAEV + K++G Q + G SG + F G S Sbjct: 374 ESVIDQLDIR-RKQVLVEAIIAEVSNGVTKKLGTQF-LVGGGSGTVPIGISTFNGLLSSV 431 Query: 242 GGDFSVKGVL---------------------------DRFSFETVLHALERATAIRTLAE 274 + G F ++ AL + L+ Sbjct: 432 ASSAAQAGTGSVGSAIGLGLAGALGDGGNIGVGRYGQGGADFALLVSALAGNSGNNILST 491 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSP 325 P+L + Q AS G T S + + ++T D GV L TPT+ Sbjct: 492 PSLLTLDNQEASIVVGQNIPIVTGSYAQTGSATSPTNPFQTITREDIGVKLKVTPTISPD 551 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 G + L+I+ EVS + R TTV++ G +VL GL+ D ++ + Sbjct: 552 GTVRLKIEQEVSSLDSAAQSSAGLITNKRNVTTTVQVDDGDVVVLGGLIDDSTNSNQQSV 611 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P L IPILG LFR + + + I P +V Sbjct: 612 PGLGDIPILGNLFRYRSASTNKRNLMIFIRPLIV 645 >gi|171911307|ref|ZP_02926777.1| putative general secretion pathway protein [Verrucomicrobium spinosum DSM 4136] Length = 821 Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 64/338 (18%), Positives = 115/338 (34%), Gaps = 97/338 (28%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------------------------ 217 + + L A Q+ + EV + ++GF Sbjct: 448 EAFVEGLTKAVPQQIYITTKFVEVSQKNTDELGFDWLLGQFDIGGRTFASGGTAATSSNY 507 Query: 218 ------------SITGSSSGPSKSFAADFGGKFVS--------EGGDFSVKGVLDRFSFE 257 S+T + S + AAD +S G F++ GV F+ Sbjct: 508 SFTQDGTAIGGYSVTSGNRSGSSAIAADSIDGLISGQSQASSVAPGVFTLAGVFTDPQFQ 567 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------------------- 297 + AL + + ++ P++T SGQ A+ + +Y T Sbjct: 568 VTIRALSQKKGVDLMSAPSVTTRSGQRATVEVIREFIYPTEFDPPQIPQNFGATSSTSTT 627 Query: 298 --------VSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSE---------- 338 + T T+ GV L P + G I L + EV+E Sbjct: 628 GTSSTSSFPVTPTTPTAFEMRPVGVRLEVDPVIGPDGYTIDLNLAPEVTEFEGFINYGSP 687 Query: 339 --------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + N + P + RK T V + G T+ + GL+++D+Q +++ Sbjct: 688 INTASTDALGNPTTVTLTENKIEQPVFSTRKVTTAVTVWDGQTVAMGGLIREDVQDVEDK 747 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +P+L +P LG LF++ + + + I T L+ P Sbjct: 748 VPILGDLPFLGRLFQSKAEDHFKRNLMIFVTAKLIDPS 785 >gi|187251612|ref|YP_001876094.1| rcpA subunit [Elusimicrobium minutum Pei191] gi|186971772|gb|ACC98757.1| RcpA subunit [Elusimicrobium minutum Pei191] Length = 248 Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 21/231 (9%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V++ I E+ I IGF DF K + G + + + Sbjct: 33 VSVSADIVEISGSINSNIGFSWYNIF-----------DFAEKEIP--GVLEIGSFERKTA 79 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 T L +E + L+ P + +G +A+ + GGQ + V++ TS+ DYGV+ Sbjct: 80 LTTRLRLMENEGKAQILSNPKIVTRTGTNANISVGGQIPFPEVNNQGVGTSM--LDYGVI 137 Query: 316 LHFTPTVLSP--GRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 L+ PT++ I L++ EVS P + V + +PS R+ +T VEL SG T+V Sbjct: 138 LNVMPTIIPEQSNLINLQVNLEVSAPDYSRTVSVGSTTVPSINKRRVETQVELHSGETLV 197 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + GL + IPLL ++P++G LFRN E+ +F+ T +V+ Sbjct: 198 IGGLKSSSRNVSVDRIPLLGRLPLIGLLFRNKDTLDEQRSLFLFVTVEIVE 248 >gi|213024121|ref|ZP_03338568.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 148 Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 2/145 (1%) Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 + A Q AS G + Y+ S +GATSV + + + TPTVL GRI L++ Sbjct: 1 MLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQ 60 Query: 337 SEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + P V+ G++ + ++ +T VE+ SG T+ L G+ + + +PLL IP L Sbjct: 61 NVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWL 120 Query: 395 GALFRNSRFNREETEIFIAATPFLV 419 G LFR+ E E+ + TP LV Sbjct: 121 GQLFRHDGKEDERRELVVFITPRLV 145 >gi|119476023|ref|ZP_01616375.1| type II and III secretion system protein [marine gamma proteobacterium HTCC2143] gi|119450650|gb|EAW31884.1| type II and III secretion system protein [marine gamma proteobacterium HTCC2143] Length = 617 Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 145/380 (38%), Gaps = 32/380 (8%) Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIG-HDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 AD S + L G+ I +++ D R + L L + I+D+ Sbjct: 199 ADAENVSGLVLSLLSDTTGETFSIAPDIRSNSLLMSGDAATTRRVRQLVKQLDQPISDNG 258 Query: 136 IR-------VEMVSDTVVLHGMVRTIQDSQR-AVELSETFLSQSGRNQYANSSSK----- 182 +E +L GM +Q++ R A + S+ + S + ++ Sbjct: 259 NTRVVYLHYLEAKEVLPILKGMGAAMQENNRNAGDSSDISIEASESSNALVMTAPPSMLD 318 Query: 183 ---KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 +V+ ++I + ++ I EV +D + IG + + + S++ +++ +FG + + Sbjct: 319 VMSRVIEQIDIRRAS-ILVEAIIVEVSKDFSQTIGVEWNTSLSANDGAEALT-NFGLRNI 376 Query: 240 SEGGDFSVKGVL------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 E G S+ G S + A+ L+ P + + + A G Sbjct: 377 DESGAVSLLGAGLNLGFYRNGSLRVLAQAIANENDANILSSPRIMTMDNEEAEILVGSNV 436 Query: 294 LYK-------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + + S+ T++ HD G+ L TP + I L I EV Sbjct: 437 PFITGQSTGSSSSTGDPFTTIERHDIGLTLKITPQINEGDSITLDILQEVETISEATTVA 496 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + R T V + +VL GL+ DD Q+L +P L +P+LG LFR + Sbjct: 497 NDIVTNKRSIKTKVIVEDDAILVLGGLVSDDTQELVSKVPFLGDLPLLGGLFRTTTDTVV 556 Query: 407 ETEIFIAATPFLVKPVAMRD 426 + + + P +V + D Sbjct: 557 KKNLMVFIHPVIVDSDQISD 576 >gi|296436215|gb|ADH18389.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis G/9768] gi|296438075|gb|ADH20236.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis G/11074] gi|297140576|gb|ADH97334.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis G/9301] Length = 921 Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225 ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 577 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 636 Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254 S A + G + G + G++ Sbjct: 637 STGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 696 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTT 309 + +L AL++ + P + A Q ASF G ++T S+ TG+ + + Sbjct: 697 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 756 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T T+ + L+I+ +SE + P A T +++P G +V Sbjct: 757 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 815 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D + ++ G+PLLS +P++ LF S R++ I I P ++ Sbjct: 816 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVISSFEEGTALS 875 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +++ R + P+ A E + Sbjct: 876 NTEGYRYNWESE-----RGSLEVAPRHAPECQ 902 >gi|115524675|ref|YP_781586.1| general secretion pathway protein D [Rhodopseudomonas palustris BisA53] gi|115518622|gb|ABJ06606.1| general secretion pathway protein D [Rhodopseudomonas palustris BisA53] Length = 789 Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 8/232 (3%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++VTIAE+ Q G Q + + A+ + G + +LD Sbjct: 529 PTQVNIEVTIAEITLTSELQYGVQFFLKSGNFSAGLGGASGIPLRTSYPGLNLVSGALLD 588 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSV 307 + VL AL + T+++ L+ P+L + Q A G Q T S+ ++V Sbjct: 589 P---QVVLDALAQFTSVKVLSSPSLVVLDRQPAVLQVGDQIPILTRQLTSAESTATVSNV 645 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D G++L+ P V + G + L ++ ++S V P+ R+ + + + SG T Sbjct: 646 DLKDTGIILNVLPRVNANGLVTLNVEQQISNVVSTQPDTLTPTISQRRVKSVISVSSGQT 705 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++LAGL+ D + G+P++S+I +L L + TE+ I P ++ Sbjct: 706 VLLAGLITDGQNINRNGLPVVSQIKVLSDLLSSHDRTASRTELIIFIRPKII 757 >gi|307720370|ref|YP_003891510.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] gi|306978463|gb|ADN08498.1| type II and III secretion system protein [Sulfurimonas autotrophica DSM 16294] Length = 504 Score = 156 bits (395), Expect = 7e-36, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 103/261 (39%), Gaps = 23/261 (8%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 +K+ N L++ + QV ++V + E+ D G S S + GG Sbjct: 222 QKIQNFLDLLMKRMHKQVLIEVKLIELVYDDSHSSGIDWSQLNVSLNGTLGGTQGTGGNT 281 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + FS L ++ ++ P + ++ Q A G Q YK Sbjct: 282 FNNSYS-----IAYNFSTSNFFKYLNTFGDVKVMSNPKILTMNNQPAVVNVGQQLSYKYQ 336 Query: 299 SSSTGAT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 + S T S+ + G+ L+ P + I + I VS Sbjct: 337 TGSVTTTGGTAAGTNTFSLGSTFIGITLYVIPEITDSNEILMSINPVVSSLSADNTPTTS 396 Query: 349 -----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 P ++++ + V++ +G +++ GL+ + + IP+L IPIL +FR + Sbjct: 397 IREIPPDTKIKQMTSVVKVKNGQKVLIGGLISATKGKDSKKIPILGDIPILSTIFRYTNN 456 Query: 404 NREETEIFIAATPFLVKPVAM 424 + TE+FI TP +VK +M Sbjct: 457 KKSRTEMFILITPKIVKNSSM 477 >gi|283852780|ref|ZP_06370044.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] gi|283571861|gb|EFC19857.1| type II and III secretion system protein [Desulfovibrio sp. FW1012B] Length = 634 Score = 156 bits (395), Expect = 7e-36, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 6/211 (2%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 S G + + + G + G + G + E L AL I+ L+ PT+ Sbjct: 406 SGQGFAINNPANLTSAATGLGAAGTGLNFLFGKIGENVLEAQLTALAEENKIKILSSPTI 465 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 T + SA +G Y VS+S T+V + L P V+ + ++I + Sbjct: 466 TTMENLSAFVENGKDIPY--VSTSQNGTNVQFAHATLKLEMLPHVVDGSNLRMKIVVKDD 523 Query: 338 E--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + P G P R+ + + + G TIV++GL +D + G+P L IP LG Sbjct: 524 QVDPNQGNWVQGNPPIYKRETQSNLVVEDGDTIVISGLTRDTVTDANSGVPFLRDIPGLG 583 Query: 396 ALFRNSRFNREETEIFIAATPFLV--KPVAM 424 F+ + E+ I TP ++ KPVA Sbjct: 584 WAFKAKSSDIHREEMLIFITPVILQEKPVAP 614 >gi|313891897|ref|ZP_07825499.1| bacterial type II/III secretion system short domain protein [Dialister microaerophilus UPII 345-E] gi|313119672|gb|EFR42862.1| bacterial type II/III secretion system short domain protein [Dialister microaerophilus UPII 345-E] Length = 405 Score = 156 bits (395), Expect = 7e-36, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 15/273 (5%) Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + + ++ + D+ + T A S + ++ L+I E QV ++ Sbjct: 114 SYGKSNEIANELKNLTDNVQVASDVGTNSVIVNATPRAMSELEHIIKALDIP-EKQVKVE 172 Query: 200 VTIAEVRRDILKQIGFQH---SITGSS--------SGPSKSFAADFGGKFVSEGGDFSVK 248 + V R K +G S+TG + S +K+ + S+ Sbjct: 173 AEVLAVNRSYAKDLGIDWQFKSLTGQAEQRNVYDKSSKTKTSYLKIPEDYAGISYGKSIT 232 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATS 306 G F F+ L+AL + LA+P + ++G++A G + + + T TS Sbjct: 233 GNPYTFFFQAKLNALLSDGKAKILAKPNVVTLNGRTAEILIGSKIPVLVEHMENGTKTTS 292 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + D G+ L +TP V I I EVS P + V R+A TTV L SG Sbjct: 293 IEYKDAGIKLTYTPNVSKNSEITADIIAEVSTPYL-VPEMKAYRIVTRQAHTTVRLKSGD 351 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + GL+ + +P+L IPILG LF+ Sbjct: 352 MLTIGGLIDKEEANNIRKVPVLGDIPILGKLFQ 384 >gi|307546346|ref|YP_003898825.1| type IV pilus assembly protein PilQ [Halomonas elongata DSM 2581] gi|307218370|emb|CBV43640.1| K02666 type IV pilus assembly protein PilQ [Halomonas elongata DSM 2581] Length = 445 Score = 156 bits (395), Expect = 7e-36, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 110/257 (42%), Gaps = 17/257 (6%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ ++++ L++A QV ++ I R + +++G ++ + A Sbjct: 187 AAIRRMLERLDVA-VRQVRIEARIVIARDSVARELGVSWGLSANEGSTPSGLNAAGASSG 245 Query: 239 VSEGGD--------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 V+E G F + + L ALE R +++P + + ++ Sbjct: 246 VAETGGLAVDLGSARSPATTFGFGYLSGDVLLDLELRALESEGKSRIISQPRVITANQRT 305 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 A G + Y+ +SS GAT+V + + L TP + RI + + ++ V Sbjct: 306 ALIKQGTEIPYQEATSS-GATNVEFKEAVLSLEVTPQITPDDRIIMELVIN-NDTVAQET 363 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 G P+ + T V + G T+VL G+L + + PLL +P+LG LFR + + Sbjct: 364 FGGAPAIDTNQIATQVLVDDGDTVVLGGILTTEQVRQLFKTPLLGDLPLLGHLFRYTENS 423 Query: 405 REETEIFIAATPFLVKP 421 ++ E+ + TP ++ Sbjct: 424 SDQVELLVFITPRILDD 440 >gi|300697020|ref|YP_003747681.1| type II secretory pathway, gspD-related protein [Ralstonia solanacearum CFBP2957] gi|299073744|emb|CBJ53265.1| putative type II secretory pathway, gspD-related protein [Ralstonia solanacearum CFBP2957] Length = 761 Score = 156 bits (395), Expect = 7e-36, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 139/374 (37%), Gaps = 33/374 (8%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--HGMVRTIQDS 157 ++ D + L + I + A LE L ++ + + +M++ + +L +D Sbjct: 209 FILDKDVRPDLKTTVFIRQ--AKLEDALDLILSTTQLNKKMMNGSTILIYPNTPEKQRDY 266 Query: 158 Q----RAVELSETFLSQSGRN-----QYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVRR 207 Q RA L+ Q+G + + N++ I D V L + E++ Sbjct: 267 QDLVVRAFYLTNAEAKQTGAMLKTMLKIREPYIDERANMVVIRESPDVVRLAERLVELQD 326 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----------- 256 ++ + + SS + F + L F Sbjct: 327 RNDSEVVLEVEVLEVSSNKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNSDRIGVS 386 Query: 257 --ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311 VL+ LA P + A + + A G + T +S++ + SV D Sbjct: 387 TPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYID 446 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTI 368 G+ L P++ + ++I EVS + R A+T ++L G T Sbjct: 447 VGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHDGETQ 506 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +LAGL+K IP L IP+LG LF + N EI ++ TP +VKP + + Sbjct: 507 LLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPETN 566 Query: 429 RPDDHYSVEDDAKA 442 + E +A+A Sbjct: 567 FMEFWSGTETNARA 580 >gi|239905312|ref|YP_002952051.1| hypothetical protein DMR_06740 [Desulfovibrio magneticus RS-1] gi|239795176|dbj|BAH74165.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 707 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 21/234 (8%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFS--------------VKGVLDRFSFETVLHAL 263 + T S + + FG F + + + G + E L AL Sbjct: 464 ASTASPAFAGGTSGQGFGLNFPALSSALTSASGLGAAGAGVNFLFGNIAGNVLEAQLTAL 523 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 + ++ L+ PT+T + SA +G Y VS+S T+V + L P V+ Sbjct: 524 AESNKVKILSSPTITTMENHSAFVENGMDVPY--VSTSQNGTNVQFAHATLKLEMLPHVV 581 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + ++I + + P R+ + + + G TIV++GL +D + + Sbjct: 582 DNSNLRMKIVVKDDQVDTTNTVQGNPFIYKRETQSNLVVEDGDTIVISGLTRDTVGDNEA 641 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-----PVAMRDLSRPDD 432 G+P LS IP LG F+ + + EI+I TP ++K P + RP D Sbjct: 642 GVPYLSDIPGLGWAFKTKASSIKREEIYIFVTPTILKEKPISPPPAVAMIRPSD 695 >gi|239618224|ref|YP_002941546.1| type II and III secretion system protein [Kosmotoga olearia TBF 19.5.1] gi|239507055|gb|ACR80542.1| type II and III secretion system protein [Kosmotoga olearia TBF 19.5.1] Length = 2628 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 77/397 (19%), Positives = 149/397 (37%), Gaps = 45/397 (11%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD---VVVHSPRTMYLFG 91 AV+ +G + L++ L + D V+ + V V +Y+ Sbjct: 2267 AVMKRIAKSLGISLMVPEELDETFTLTLEGVTWDTFVA--AIQECEPVKVEKVNDIYIVR 2324 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 K + G+Q+ + +I L+ + + + + V+ +V+ G+ Sbjct: 2325 KKEIVSEAPTDDATGEQIY----RVYHNIEELKTLIEFY--GGTVYADSVNGILVVKGLP 2378 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 ++ R +EL E + QV ++ I V + +L Sbjct: 2379 KS-----RVLELMEQVSGTFTSPK------------------KQVKIETRI--VDKSLLD 2413 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-DRFSFETVLHA-LERAT-A 268 I Q S + P+ F++ S +L + + + A LE++ Sbjct: 2414 DITKQFSTSLGFEQPNILFSSGSLNLSFSILDSVDFAKLLKNLITGSATITAQLEKSNVD 2473 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 ++ P++ A+SG+ A G ++ + + GV + TPTV Sbjct: 2474 GSIISNPSIVALSGEEARIHIGDTIPILLKKIDPATGNIVEELQYLETGVEMTITPTVKD 2533 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 G I L + +VSEP N D+ + R+A T + + G T+ + GL+ + Sbjct: 2534 DGTILLDLYIKVSEPQPYAN--DLYGEKTREAKTKLVISDGNTLTIGGLVSERENVSVTK 2591 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P +P +G LFR + +E+ E+ I T +V P Sbjct: 2592 LPFFGDLPFIGKLFRAEKTTKEQREMVIFITAKVVAP 2628 >gi|269792653|ref|YP_003317557.1| type II and III secretion system protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100288|gb|ACZ19275.1| type II and III secretion system protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 589 Score = 156 bits (394), Expect = 8e-36, Method: Composition-based stats. Identities = 59/302 (19%), Positives = 124/302 (41%), Gaps = 22/302 (7%) Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETF-LSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 D + V+T+ + R + + E + ++ ++ +N + G+ QV L Sbjct: 274 SYGDVKQISAQVQTLFEITRPIAVDERLRVMYVTGRPEQLAAVERFLNAADHPGK-QVML 332 Query: 199 KVTIAEVRRDILKQI--GFQ-----HSITGSSSGPSKSFAADFGGKF-------VSEGGD 244 + I EV+ D ++++ ++ SS G ++ V++ G Sbjct: 333 QARIVEVKDDGVRELESVVNTVYRYWWLSFSSKGGVLGYSRINQESVYKNDTNRVTKPGA 392 Query: 245 FSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + + + + + ALE A +TLA P++ + G+ A + Y + Sbjct: 393 TDISAIAESGGLSLLDAGIKALENADKGKTLASPSVVVVDGKEAKISLTENIKYISARDQ 452 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADT 358 G + + G + F PTV G + +++ + E + G ++P R+ + Sbjct: 453 AGNPTYSEEKVGPTMEFLPTVGRDGFVTIKMTLKTGEVTKYIKGGLGEEVPQTSTREVTS 512 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V + G V+ GL +D + IP+LS IP++G LF++ +E E+ + P + Sbjct: 513 YVRVRDGEPFVVGGLFRDSNTFSEYRIPVLSDIPLIGELFKSRTKKKERGEVAMIVIPHI 572 Query: 419 VK 420 + Sbjct: 573 LD 574 >gi|331654572|ref|ZP_08355572.1| general secretion pathway protein D [Escherichia coli M718] gi|331047954|gb|EGI20031.1| general secretion pathway protein D [Escherichia coli M718] Length = 615 Score = 156 bits (394), Expect = 8e-36, Method: Composition-based stats. Identities = 61/301 (20%), Positives = 109/301 (36%), Gaps = 44/301 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 E 407 Sbjct: 613 N 613 >gi|187250988|ref|YP_001875470.1| type II secretion system [rpteom [Elusimicrobium minutum Pei191] gi|186971148|gb|ACC98133.1| Putatively involved in type II secretion system [Elusimicrobium minutum Pei191] Length = 527 Score = 156 bits (394), Expect = 9e-36, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 96/270 (35%), Gaps = 43/270 (15%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADF--GGKFVSEGGDFS 246 QV ++ I EV + +IG + T + +GP++ D+ G G F Sbjct: 256 PPQVLIEAQIIEVNKSSGLEIGLSYGGTDGTIFKFTGPARGVDIDYVKGNGVSGWGYIFP 315 Query: 247 VK-----------------------------GVLDRFSFETVLHALERATAIRTLAEPTL 277 LD SF VL +L + L +P + Sbjct: 316 PAGTGTGGSSGGDSGGGSTDGSGGNSNSPKDAFLDFSSFSIVLKSLLTRGEAKYLGKPKV 375 Query: 278 TAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 I+ Q A S T S++ + + G+ L TP V G I Sbjct: 376 VTINNQPAVIESTRDAAVGFASNLSGNTGSTNVVSQTAERKTVGLTLKVTPQVNKEGYIT 435 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 L I+ S + R A T V + +G T+VL GLL +PLL Sbjct: 436 LLIEPSYSSVANSAVSDGTKDTLNRSASTLVRVKNGQTVVLGGLLSSREILEDRKVPLLG 495 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LF +E T++ I TP ++ Sbjct: 496 DIPLIGWLFTQRSTTKETTDMVIFVTPTIL 525 >gi|71905856|ref|YP_283443.1| type II and III secretion system secretin [Dechloromonas aromatica RCB] gi|71845477|gb|AAZ44973.1| type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal [Dechloromonas aromatica RCB] Length = 715 Score = 156 bits (394), Expect = 9e-36, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 92/256 (35%), Gaps = 27/256 (10%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------ 238 G QV ++ + E + + +G + + + G Sbjct: 453 TGARQVLIEARVVEAQDSFNRALGGKFGFLNKQAVQPAGSGINVAGGSSTTAGQSTSTPM 512 Query: 239 -------VSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 S GG ++ FS L ALE + ++ P + + A Sbjct: 513 VGVNLPSPSTGGSLALSLFTASFSRILNLELAALESDGLGKIVSSPRVITANNVKAKIED 572 Query: 290 GGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----V 343 G + Y T SS G +V+ + L TP + G + + + + E + Sbjct: 573 GTEIPYVTTQSSGGTTTATVSFKPAKLSLEVTPQITPEGTVRMNLVVKKEEADWTKAVVL 632 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 N P + +T V + +GGT+V+ G+ D Q E +PLL IP G LF+ Sbjct: 633 NGYANPPIKSSVVETNVVVENGGTVVIGGVFITDTQNSVEKVPLLGDIPFFGWLFKYKND 692 Query: 404 NREETEIFIAATPFLV 419 + E+ + TP ++ Sbjct: 693 IGKRRELLVFITPRVI 708 >gi|323941937|gb|EGB38116.1| general secretion pathway protein D [Escherichia coli E482] Length = 615 Score = 155 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 61/301 (20%), Positives = 109/301 (36%), Gaps = 44/301 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 E 407 Sbjct: 613 N 613 >gi|307720788|ref|YP_003891928.1| pilus (MSHA type) biogenesis protein MshL [Sulfurimonas autotrophica DSM 16294] gi|306978881|gb|ADN08916.1| pilus (MSHA type) biogenesis protein MshL [Sulfurimonas autotrophica DSM 16294] Length = 542 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 103/277 (37%), Gaps = 33/277 (11%) Query: 195 QVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKFVSEG-------- 242 QV + V + V K G ++ S + + G ++G Sbjct: 239 QVLIDVQLLSVTMSKGKSTGIDWKQLYALQNIKLSASTANYNNIGTTIPADGIITDTAAV 298 Query: 243 --GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G + + V+ L+ + +++ P + ++ Q A T+G ++ YK +SS Sbjct: 299 GAGASQLLSMSASGQLTEVIKFLKTQGDVNSISNPKVLTLNNQPALITAGTEYFYKIISS 358 Query: 301 S------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 + T +V + GV+L TP + I L+I +SE ++ Sbjct: 359 TNQQGTGGGVAATTQNDTVNSVFAGVLLTITPEISDDKTITLKINPSLSETTTDISQTSN 418 Query: 349 ------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 P R+ + V + G I+L GL+ +P+L IP+LG LF++ Sbjct: 419 SGRDMPPDLNRRQLSSVVTVKDGNRIILGGLINSKNTSDTNQVPILGSIPVLGYLFKHEE 478 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 + E+ I P ++ +S D Y D Sbjct: 479 IVKTVEELVIIIEPHIIH-KEKDSISLSDLGYEGLSD 514 >gi|207739033|ref|YP_002257426.1| general secretion pathway gspd-related protein [Ralstonia solanacearum IPO1609] gi|206592404|emb|CAQ59310.1| general secretion pathway gspd-related protein [Ralstonia solanacearum IPO1609] Length = 761 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 140/374 (37%), Gaps = 33/374 (8%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--HGMVRTIQDS 157 ++ D + L + I + A LE L ++ + + +M++ + +L +D Sbjct: 209 FILDKDVRPDLKTTVFIRQ--AKLEDALDLILSTTQLNKKMMNGSTILIYPNTPEKQRDY 266 Query: 158 Q----RAVELSETFLSQSGRN-----QYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVR- 206 Q RA L+ Q+G + + N++ I D V L + E++ Sbjct: 267 QDLVVRAFYLTNAEAKQTGAMLKTMLKIREPYIDERANMVVIRESPDVVRLAERLVELQD 326 Query: 207 RDILKQIGF------------QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 R+ + + Q I +S +A + Sbjct: 327 RNDSEVVLEVEVLEVSSTKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNSDRIGVS 386 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311 + VL+ LA P + A + + A G + T +S++ + SV D Sbjct: 387 TPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYID 446 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTI 368 G+ L P++ + ++I EVS + R A+T ++L G T Sbjct: 447 VGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHDGETQ 506 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +LAGL+K IP L IP+LG LF + N EI ++ TP +VKP + + Sbjct: 507 LLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPETN 566 Query: 429 RPDDHYSVEDDAKA 442 + E +A+A Sbjct: 567 FMEFWSGTETNARA 580 >gi|207724227|ref|YP_002254624.1| general secretion pathway gspd-related protein [Ralstonia solanacearum MolK2] gi|206589440|emb|CAQ36401.1| general secretion pathway gspd-related protein [Ralstonia solanacearum MolK2] Length = 761 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 140/374 (37%), Gaps = 33/374 (8%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--HGMVRTIQDS 157 ++ D + L + I + A LE L ++ + + +M++ + +L +D Sbjct: 209 FILDKDVRPDLKTTVFIRQ--AKLEDALDLILSTTQLNKKMMNGSTILIYPNTPEKQRDY 266 Query: 158 Q----RAVELSETFLSQSGRN-----QYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVR- 206 Q RA L+ Q+G + + N++ I D V L + E++ Sbjct: 267 QDLVVRAFYLTNAEAKQTGAMLKTMLKIREPYIDERANMVVIRESPDVVRLAERLVELQD 326 Query: 207 RDILKQIGF------------QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 R+ + + Q I +S +A + Sbjct: 327 RNDSEVVLEVEVLEVSSTKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNSDRIGVS 386 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311 + VL+ LA P + A + + A G + T +S++ + SV D Sbjct: 387 TPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYID 446 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTI 368 G+ L P++ + ++I EVS + R A+T ++L G T Sbjct: 447 VGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHDGETQ 506 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +LAGL+K IP L IP+LG LF + N EI ++ TP +VKP + + Sbjct: 507 LLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPETN 566 Query: 429 RPDDHYSVEDDAKA 442 + E +A+A Sbjct: 567 FMEFWSGTETNARA 580 >gi|323946657|gb|EGB42679.1| general secretion pathway protein D [Escherichia coli H120] Length = 615 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 61/301 (20%), Positives = 109/301 (36%), Gaps = 44/301 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ +E Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612 Query: 407 E 407 Sbjct: 613 N 613 >gi|270284835|ref|ZP_06194229.1| Type III secretion structural protein (outer membrane ring) [Chlamydia muridarum Nigg] gi|270288864|ref|ZP_06195166.1| Type III secretion structural protein (outer membrane ring) [Chlamydia muridarum Weiss] gi|301336215|ref|ZP_07224417.1| Type III secretion structural protein (outer membrane ring) [Chlamydia muridarum MopnTet14] Length = 918 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 54/333 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225 ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 574 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 633 Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254 + A + G + G + G++ Sbjct: 634 NTGVVDPLRNQTPPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 693 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309 + +L AL++ + P + A Q ASF G ++T S+ + ++ Sbjct: 694 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 753 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T T+ + L+I+ +SE + P A T +++P G +V Sbjct: 754 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 812 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D + ++ G+PLLS +P++ LF + R++ I I P ++ + Sbjct: 813 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVISSFEEGTVLS 872 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 + Y +++ R + P+ A E + Sbjct: 873 NSEGYRYNWESE-----RGSLEVAPRHAPECQN 900 >gi|254228227|ref|ZP_04921656.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio sp. Ex25] gi|151939300|gb|EDN58129.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio sp. Ex25] Length = 624 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 64/320 (20%), Positives = 120/320 (37%), Gaps = 25/320 (7%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----- 174 + + L+R ++ +V S+ V + +V T ++ G N Sbjct: 213 VPGIASVLKRVVSGVQTQVTSASNKEVTSSDTPVKSNKTASVHGGATVEAEPGLNAIIVR 272 Query: 175 --QYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---S 227 Q +K++ L+ + Q ++V +I ++ + L Q+G S Sbjct: 273 DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGVSVGNNRIVD 329 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284 D V+ G + K +LD + + LE + + ++ PTL Sbjct: 330 IKTTGDVSSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVE 389 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339 A + K V T A + YG +L P ++ +I L + E Sbjct: 390 AVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPKINLSLHLEDGAK 447 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + D+PS R + T + G ++++ G+ +D++ +PLL IP LGALFR Sbjct: 448 ITDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 507 Query: 400 NSRFNREETEIFIAATPFLV 419 ++ + T P +V Sbjct: 508 SNTNTKRRTVRMFILEPRIV 527 >gi|329121951|ref|ZP_08250564.1| type II and III secretion system protein [Dialister micraerophilus DSM 19965] gi|327467397|gb|EGF12896.1| type II and III secretion system protein [Dialister micraerophilus DSM 19965] Length = 405 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 15/273 (5%) Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + + ++ + D+ + T A S + ++ L+I E QV ++ Sbjct: 114 SYGKSNEIANELKNLTDNVQVASDVGTNSVIVNATPRAMSELEHIIKALDIP-EKQVKVE 172 Query: 200 VTIAEVRRDILKQIGFQH---SITGSS--------SGPSKSFAADFGGKFVSEGGDFSVK 248 + V R K +G S+TG + S +K+ + S+ Sbjct: 173 AEVLAVNRSYAKDLGIDWQFKSLTGQAEQRNVYDKSSKTKTSYLKIPEDYAGISYGKSIT 232 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATS 306 G F F+ L+AL + LA+P + ++G++A G + + + T TS Sbjct: 233 GNPYTFFFQAKLNALLSDGKAKILAKPNVVTLNGRTAEILIGSKIPVLVEHMENGTKTTS 292 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + D G+ L +TP V I I EVS P + V R+A TTV L SG Sbjct: 293 IEYKDAGIKLTYTPNVSKNSEITADIIAEVSTPYL-VPEMKAYRIVTRQAHTTVRLKSGD 351 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + + GL+ + +P+L IPILG LF+ Sbjct: 352 MLTIGGLIDKEEANNIRKVPVLGDIPILGKLFQ 384 >gi|325109742|ref|YP_004270810.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] gi|324970010|gb|ADY60788.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] Length = 1315 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 70/358 (19%), Positives = 132/358 (36%), Gaps = 50/358 (13%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRD 208 V ++ R + + +S S ++++ L++ +V ++ + EV D Sbjct: 863 VTNLEIMDREIIVVPETVSNSLLISATPRYFEEILTLVHRLDEKPPEVVIQALLVEVELD 922 Query: 209 ILKQIGFQHSITGS-------SSGPSKSF---------AADFGGKFVSEGGDFSVKGVLD 252 + G Q + S + P +F A+ DF++ + + Sbjct: 923 NDDEFGVQLGLQDSVLFDRSIDNTPGYNFNNQPLGRDTTANPSAVGTQALSDFAMGRLNN 982 Query: 253 RFSF------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 F ++ AL ++ L+ PT+ + Q A G Q + Sbjct: 983 SLGFGGLVLAASSESVSVLIRALSAKRNVQILSRPTIRTLDNQLAQILVGQQVPIVDGVT 1042 Query: 301 STGATSVTT-----HDYGVVLHFTPTVLSPGRIGLR-IQTEVSEPVIGV---------NA 345 TG + T G++L TP + G I + + T+ S GV + Sbjct: 1043 ITGTIGIATPQIVQQQVGIILAVTPRISPDGSIVMETVATKSSLSDEGVPIFTDIETGSV 1102 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + P + A TV +P+G T+VL G++ D + +P + +PILG FR + Sbjct: 1103 IESPIINLTTAQATVSVPNGQTVVLGGMITKDEVSFRRNVPWIGDLPILGIPFRYEGKST 1162 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 TE+ I TP ++ ++ + VE + F I+GP ++ Q Sbjct: 1163 RRTELLIFLTPRVIYNDIDSEVIK-----RVETERLHFLEKEAEAIHGPLYSAPQAQQ 1215 >gi|104781918|ref|YP_608416.1| secretion type II protein [Pseudomonas entomophila L48] gi|95110905|emb|CAK15621.1| Putative secretion type II protein related to gspD (secretin) protein [Pseudomonas entomophila L48] Length = 611 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 87/402 (21%), Positives = 147/402 (36%), Gaps = 43/402 (10%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + D + + I + +E + + + +R ++V+D +L + Q ++ Sbjct: 208 FIFDRDLRPDMKATIFVRE--VRIEDAVALLLEQNQLRQKIVNDNTLLV-YPDSPQKTKD 264 Query: 160 AVELSET--FLSQSGRNQYAN-------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 EL +L+ N N + V LN V +AE Sbjct: 265 YQELVMRTFYLTSIDANTAMNMLKTMLKTRDVFVDERLNTLTMRDTPDAVRMAEKLLQSQ 324 Query: 211 KQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVLDRFSFE------ 257 Q + + + S D G G S+G SV L Sbjct: 325 DQSNPEVVLEVEVMEVATSRILDLGLQWPNTFGVLTSDGKSVSVLDQLRGIDSSRISISP 384 Query: 258 ---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT 308 ++A + I TLA P + + + A G + + +S SVT Sbjct: 385 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 442 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS-YRVRKADTTVELPSG 365 D G+ L PTV + +++ EVS P+ G +P R A T++ L G Sbjct: 443 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 502 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ + + Sbjct: 503 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLPYQ 562 Query: 426 DLSRPDDHYSVEDDAKAFFFNR----VNKIYGPKEASEVEGQ 463 S + E + R + P VEGQ Sbjct: 563 SPSDMEFGTGTESSMQVRQMARPLPASDGDQPPGSVPMVEGQ 604 >gi|15606033|ref|NP_213410.1| hypothetical protein aq_585 [Aquifex aeolicus VF5] gi|2983222|gb|AAC06820.1| hypothetical protein aq_585 [Aquifex aeolicus VF5] Length = 705 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 106/239 (44%), Gaps = 14/239 (5%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----GDFSVKGVL 251 + ++ + EV + +L+++G S + + + + + V+ G G + Sbjct: 465 IKIRAKLVEVEKSLLRELGISWRTVFSKAYIPEFWQGETAFRTVTPGQPQSGLLTFTFQR 524 Query: 252 DRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-- 308 +R + E L A E+ + +AE + ++G+ A +SG + VS S G +V Sbjct: 525 NRLNLLEFKLLAYEQEGRAKNVAESYVITVNGEPAVISSGLEFPVTEVSLSGGIANVEPK 584 Query: 309 THDYGVVLHFTPTVLSPGRIGL-------RIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 +VL TP VL G I L +I + PV +P + + D + Sbjct: 585 YESIPIVLITTPVVLPDGNILLSVYLARRQINSVQEFPVTQTLTQKIPVFSTSRIDVKIP 644 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +G T+V+ G ++ + G+P L ++P+LG LF+ + E+ I TP +++ Sbjct: 645 IKNGETVVIGGAVEKSDSITESGVPKLREVPLLGWLFKTQTKQLRDRELLIFITPEIIE 703 >gi|319956469|ref|YP_004167732.1| pilus (msha type) biogenesis protein mshl [Nitratifractor salsuginis DSM 16511] gi|319418873|gb|ADV45983.1| pilus (MSHA type) biogenesis protein MshL [Nitratifractor salsuginis DSM 16511] Length = 511 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 113/271 (41%), Gaps = 30/271 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---------GPSKSFAADFGGKFVSEGG 243 + +V + V I +VR + G + ++S G + S + K S+ G Sbjct: 240 KTEVMIDVRIIDVRINNNHSYGIDWNKIFNTSIRFTGDVTHGTTNSVTHNVSLKDGSDIG 299 Query: 244 DFSVKGVLD---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-TVS 299 D+ G + VL L+ + ++ P + ++ Q A + G + YK T + Sbjct: 300 DYLPGGGISFTFSGDLTEVLKFLKTQGDVTVVSSPRVMTLNNQPAMISVGQEIYYKLTTT 359 Query: 300 SSTGATSVTTHD--------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--- 348 + G + T + G++L TP V G I L+I ++ +A ++ Sbjct: 360 NKVGGSDTATSENEEVKSVFAGILLDITPEVDERGMITLKINPSITALANEEDAKNLQGV 419 Query: 349 ----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P + R+ + +++ G +L GL+ +EG+P+L IPILG F+ + Sbjct: 420 RTMPPDIKRRQIASVIKIKDGDHAILGGLITRGHGTKEEGLPVLENIPILGYAFKKEQKI 479 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYS 435 E+ + TP +++ R+++ D Y Sbjct: 480 DYTDELVLIITPHIIRN--NRNVTLKDLGYR 508 >gi|78223066|ref|YP_384813.1| type II and III secretion system protein [Geobacter metallireducens GS-15] gi|78194321|gb|ABB32088.1| type II and III secretion system protein [Geobacter metallireducens GS-15] Length = 861 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 80/352 (22%), Positives = 148/352 (42%), Gaps = 42/352 (11%) Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG---RNQYANSSSKKVMN 186 + + + D VV + T+ D+++AV L T L + + Sbjct: 253 IFPKTPEKSKQYEDLVVKTFFLNTL-DAKKAVNLLRTMLQVRKVYVNEELNAIVVRDTSE 311 Query: 187 LLNIAGE---------DQVTLKVTIAEVRRDILKQIGF---QHSITGSSSGPSKSFAAD- 233 L+++AG+ +V L V + EV + ++ G +++++ ++ P F D Sbjct: 312 LVDVAGKILEANDVPDAEVLLDVEVIEVSKRNIENFGLALSKYAVSLNTQTPGGGFLNDT 371 Query: 234 FGGKFVSEGGDFSVKG-----VLDRFSFE----------TVLHALERATAIRTLAEPTLT 278 F VS +++G +L FS+ + T LA P + Sbjct: 372 FSRASVSSSTGTTIQGTAGSELLQTFSWNGYSGFMTVPSASYSFGKSITNAEVLANPKIR 431 Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 + + + FT G + T S++ + +V D GV L+ PT++ + +++ Sbjct: 432 VKNREKSKFTVGTRVPITTTSTTGTTGGFSVNVQYVDVGVKLNAEPTIMLNNEVSIKLGL 491 Query: 335 EVSEPVIGVNAG------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 EVS + G + + R DT + L G T V+ GL++D+ Q+ K+ I LL Sbjct: 492 EVSSIIDKQTVGGTDSATTVVTIGTRNLDTVLNLKDGETSVIGGLIEDNKQKGKQKIFLL 551 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IPI+G L N+ + ++ E+ +A TP LV+ V + + EDD Sbjct: 552 GDIPIIGPLLSNNSNDNQKRELILAITPRLVRSVTVPEPDLVSFWSGKEDDP 603 >gi|182679972|ref|YP_001834118.1| general secretion pathway protein D [Beijerinckia indica subsp. indica ATCC 9039] gi|182635855|gb|ACB96629.1| general secretion pathway protein D [Beijerinckia indica subsp. indica ATCC 9039] Length = 803 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 9/239 (3%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG- 249 QV ++VT+AEV G Q + S+ +A + Sbjct: 542 RPPVQVEIEVTVAEVTLTDALNYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNL 601 Query: 250 -VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--- 305 + + V++AL T ++ L+ P+L + Q A G Q + +++ T Sbjct: 602 MIGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANP 661 Query: 306 ----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 SV D G++L+ P V + G + L I+ ++S P+ R+ +T+ Sbjct: 662 AIVNSVNYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIA 721 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P+G T++LAGL+++ + G+P++SKI L L N + TE+ + P +++ Sbjct: 722 IPNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILR 780 >gi|312972778|ref|ZP_07786951.1| general secretion pathway protein D [Escherichia coli 1827-70] gi|310332720|gb|EFP99933.1| general secretion pathway protein D [Escherichia coli 1827-70] Length = 613 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 60/300 (20%), Positives = 109/300 (36%), Gaps = 44/300 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ ++ Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKK 612 >gi|262394108|ref|YP_003285962.1| type III secretion system outer membrane pore YscC [Vibrio sp. Ex25] gi|262337702|gb|ACY51497.1| type III secretion system outer membrane pore YscC [Vibrio sp. Ex25] Length = 604 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 64/320 (20%), Positives = 120/320 (37%), Gaps = 25/320 (7%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----- 174 + + L+R ++ +V S+ V + +V T ++ G N Sbjct: 193 VPGIASVLKRVVSGVQTQVTSASNKEVTSSDTPVKSNKTASVHGGATVEAEPGLNAIIVR 252 Query: 175 --QYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---S 227 Q +K++ L+ + Q ++V +I ++ + L Q+G S Sbjct: 253 DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGVSVGNNRIVD 309 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284 D V+ G + K +LD + + LE + + ++ PTL Sbjct: 310 IKTTGDVSSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVE 369 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339 A + K V T A + YG +L P ++ +I L + E Sbjct: 370 AVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPKINLSLHLEDGAK 427 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + D+PS R + T + G ++++ G+ +D++ +PLL IP LGALFR Sbjct: 428 ITDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 487 Query: 400 NSRFNREETEIFIAATPFLV 419 ++ + T P +V Sbjct: 488 SNTNTKRRTVRMFILEPRIV 507 >gi|116747987|ref|YP_844674.1| type IV pilus secretin PilQ [Syntrophobacter fumaroxidans MPOB] gi|116697051|gb|ABK16239.1| type IV pilus secretin PilQ [Syntrophobacter fumaroxidans MPOB] Length = 636 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 113/261 (43%), Gaps = 13/261 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--FAADFGG 236 ++++ ++N L+ QV ++ I + ++ + +G G + S + F Sbjct: 382 NNARMLLNRLDRPTS-QVLIEARIITLTSEVKRSLGMNLGFGGDTPNHSATVPFTDFLIN 440 Query: 237 KFVSEGGDFSVKGVLDRFSF--ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + ++ ++ + + ALE A IR +A P + ++ A + G Q Sbjct: 441 SPPANLFALNLAQMVGTTLLKVDLTISALETADEIRIMAAPRVLTMNNVKAVISQGVQIP 500 Query: 295 Y-KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYR 352 Y K +++ T D + L TP + ++ + I+ + EP V P Sbjct: 501 YLKVGDTASNITGTDFKDAVLELAVTPHITPDHKVRMTIEAKQDEPSSTVTGAQGQPGID 560 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 RK T + + G IV+ G++++ + K P LS +PILG LF+++ + + EI I Sbjct: 561 TRKISTELLVDDGNIIVIGGIIRNRDEAKKTATPGLSDVPILGRLFKSNEVDAQRNEILI 620 Query: 413 AATPFLVKPVAMRDLSRPDDH 433 P +V D+++P D Sbjct: 621 FICPKIV------DVTKPSDR 635 >gi|323173796|gb|EFZ59425.1| general secretion pathway protein D [Escherichia coli LT-68] Length = 613 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 60/300 (20%), Positives = 109/300 (36%), Gaps = 44/300 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494 Query: 292 QHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 T S+ S +V G++L TP + + + I+ EVS+ + Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + + RK TTV G IVL GL+ D + +PLL IP++G LF+++ ++ Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKK 612 >gi|171060459|ref|YP_001792808.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] gi|170777904|gb|ACB36043.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] Length = 596 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 81/422 (19%), Positives = 153/422 (36%), Gaps = 66/422 (15%) Query: 96 QANVILIGHD-GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 ++ + L G+ + L + + + L+ ++ + + V ++R Sbjct: 105 RSTLFLTDARVGEALEVLLLSQQLAMRALDGRTALIYPNTPAKQRTYGELQVRTFVLRHT 164 Query: 155 QDSQRAVEL-----SETFLSQSGRNQYANSSSKKVMNL------LNIAGEDQVTLKVTIA 203 + + A L S++ ++ N + +V+ L +N V ++V + Sbjct: 165 EAATMATLLKSLVKSQSIVTDPRSNTLVLRDTPEVLQLAEQLIAINDRPSGDVVIEVQLI 224 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 EV R L ++G + S + P+ +A G + GGD + L L+ Sbjct: 225 EVNRQRLSRLGLSWPTSLSIATPA---SATTLGALRALGGDAWLASPLALG-----LNLQ 276 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------------------------ 299 + +A P++ A + A G + T Sbjct: 277 LQDIGATVIANPSVRARHKEKARLLIGDKVPVMTTQLASMGGSGASAAAPATTAPVTAAE 336 Query: 300 -----------SSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 + G T SV D G L P V + G + L I E+S+ + Sbjct: 337 GQAGQAEQAGQAGDGGTVMFSGSVQYIDVGFKLEVEPQVHADGDVDLDIDIELSQITQTL 396 Query: 344 NAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + +Y+ VR+A T++ L G T L GL++ + G+P LS++P++G LF Sbjct: 397 DTDSGVAYQLGVRQAQTSMRLRDGETQWLGGLIRRQERAAMSGLPGLSQLPVIGRLFGLE 456 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + +TE+ +A TP + +PV P V+ A R ++ P Sbjct: 457 SQDTADTELVLAVTPRIARPVPP----LPAGGALVDAGLDAQAGARPIRMQAPSAGEAAA 512 Query: 462 GQ 463 G Sbjct: 513 GP 514 >gi|313200626|ref|YP_004039284.1| type II and iii secretion system protein [Methylovorus sp. MP688] gi|312439942|gb|ADQ84048.1| type II and III secretion system protein [Methylovorus sp. MP688] Length = 645 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 135/307 (43%), Gaps = 25/307 (8%) Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 ++ + ++ ++ +T+V+ I+ +++ + + + +++ + Sbjct: 293 MIKTVVKSKDVYIDEKLNTLVMRDTPEAIRTAEKLIMSQDMAEPEVVLEVEVLEINRRSL 352 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 + I V++ V RD ++ G+++ F S+ G F Sbjct: 353 EAIGIRYPSAVSVGVQ----GRD---------TVNGTTTLSPGELTVRELKNFNSDLGVF 399 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG- 303 S+ + L+ L++ T LA P + + + A G + T +++STG Sbjct: 400 SISDPV------LALNLLQQDTDTNLLANPRIRVKNREKAKIHVGDRIPVLTSIANSTGF 453 Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTT 359 + SV+ + G+ L PTVL + +++ EVS + + + R A+T Sbjct: 454 VSQSVSYIEVGIKLDVEPTVLLNDEVSIKVGLEVSNQTDKITSSSGTVTYTIGTRNANTM 513 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L +G T VLAGLL+DD Q++ +P L+ +P++G LF + +R + EI + TP ++ Sbjct: 514 LRLKNGETQVLAGLLRDDEQKISNKVPGLANLPLIGKLFTDRNTDRTKKEIALLITPRII 573 Query: 420 KPVAMRD 426 + D Sbjct: 574 SNITPAD 580 >gi|182678562|ref|YP_001832708.1| general secretion pathway protein D [Beijerinckia indica subsp. indica ATCC 9039] gi|182634445|gb|ACB95219.1| general secretion pathway protein D [Beijerinckia indica subsp. indica ATCC 9039] Length = 801 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 9/239 (3%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG- 249 QV ++VT+AEV G Q + S+ +A + Sbjct: 540 RPPVQVEIEVTVAEVTLTDALNYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNL 599 Query: 250 -VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--- 305 + + V++AL T ++ L+ P+L + Q A G Q + +++ T Sbjct: 600 MIGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANP 659 Query: 306 ----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 SV D G++L+ P V + G + L I+ ++S P+ R+ +T+ Sbjct: 660 AIVNSVDYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIA 719 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P+G T++LAGL+++ + G+P++SKI L L N + TE+ + P +++ Sbjct: 720 IPNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILR 778 >gi|39996877|ref|NP_952828.1| type II secretion system protein [Geobacter sulfurreducens PCA] gi|39983765|gb|AAR35155.1| type II secretion system protein, putative [Geobacter sulfurreducens PCA] gi|298505890|gb|ADI84613.1| type II secretion system secretin lipoprotein PulQ [Geobacter sulfurreducens KN400] Length = 822 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 133/335 (39%), Gaps = 44/335 (13%) Query: 153 TIQDSQRAVELSETFLSQSG---RNQYANSSSKKVMNLLNIAGE---------DQVTLKV 200 D+++AV L T L + + L+++AG+ +V L+V Sbjct: 275 NSLDAKKAVNLLRTMLQVKKIYVNEELNALVIRDNPELIDVAGKILEANDVPDAEVLLEV 334 Query: 201 TIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVK 248 + +V ++ + G S + + G F +D + VK Sbjct: 335 EVIQVSKNNSELFGLGLSRYAVSLNARTPGSGGDFFSDTFDPKVTTTSNDTTTVTTTQVK 394 Query: 249 GVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 +L+ F++ + ++ + L+ P + + + + FT G + T Sbjct: 395 NLLNLFNWNGYQGFLTVPSATYNFSKQLSNAEVLSNPKIRVKNREKSKFTVGTRVPITTT 454 Query: 299 SSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------M 348 SS+ +V D GV L+ P + + +++ EVS + G + Sbjct: 455 SSTGSVGGVTVNVQYVDVGVKLNAEPVIQLNNEVTIKLGVEVSSIIGEKTVGSGDAISSV 514 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + R DT + L G T ++ GL++D + K+ I LL IP++G+L + +++ Sbjct: 515 VTIGTRNVDTVLNLKDGETSIIGGLIEDTKSKSKQKIWLLGDIPLIGSLLSSHNDRYDKS 574 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 E+ +A TP +V+ V++ + EDD A Sbjct: 575 ELVLAITPRIVRAVSVPEADVAAFWSGKEDDPTAV 609 >gi|170721649|ref|YP_001749337.1| type II and III secretion system protein [Pseudomonas putida W619] gi|169759652|gb|ACA72968.1| type II and III secretion system protein [Pseudomonas putida W619] Length = 625 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 85/399 (21%), Positives = 147/399 (36%), Gaps = 45/399 (11%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + D + + I + +E + + + +R ++V+D +L + Q ++ Sbjct: 212 FIFDKDLRPDMKATIFVRE--VRIEDAIALLLEQNQLRQKIVNDNTLLV-YPDSPQKTKD 268 Query: 160 AVELSET--FLSQSGRNQYANSSSK-------KVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 EL +L+ N N V LN V +AE Sbjct: 269 YQELVMRTFYLTSIDANTALNMVKTMLKTRDVFVDERLNTLTMRDTPDAVRMAEKLLQSQ 328 Query: 211 KQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVLDRFSF------- 256 Q + + ++S D G G EG SV L + Sbjct: 329 DQSNPEVVLEVEVMEVARSRILDLGLQWPNTFGVLSDEGNPVSVLDQLRGINSGRISISP 388 Query: 257 --ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT 308 + ++A + I TLA P + + + A G + + +S SVT Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS-YRVRKADTTVELPSG 365 D G+ L PTV + +++ EVS P+ G +P R A T++ L G Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEPTRQGTIPVQVDTRNAQTSLRLHDG 506 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T VLAGL+++D IP L IP LG LF ++R + ++E+ +A TP +V+ + + Sbjct: 507 ETQVLAGLVRNDKTSSGNKIPGLGDIPGLGRLFGSNRDDMSKSELVLAITPRIVRNLPYQ 566 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 S + E + V ++ P A + Sbjct: 567 SPSDMEFATGTESSMQ------VRQLALPLPAGALPADE 599 >gi|47420041|gb|AAT27370.1| pIV [VCSM13 interference-resistant helper phage] Length = 426 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 18/268 (6%) Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 LS G N S+ K +++ L DQ+ ++ I EV++ + F + Sbjct: 164 LSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA--LDFSFAAGS 221 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + D +S G G+ + + AL+ + + L+ P + +S Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279 Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 GQ S + G + T + + ++ + G+ + P ++ G I L I + Sbjct: 280 GQKGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITS 339 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + A D+ + R TTV L G T++L GL G+P LSKIP++ Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422 G LF + + EE+ +++ +V+ + Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|166211|gb|AAA32218.1| protein IV [Enterobacteria phage f1] gi|58091841|gb|AAW65343.1| gene IV protein [synthetic construct] gi|58091857|gb|AAW65354.1| gene IV protein [synthetic construct] gi|153902269|dbj|BAF74211.1| protein IV [Enterobacteria phage f1] gi|262064184|gb|ACY07165.1| IV [Enterobacteria phage f1] Length = 426 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 18/268 (6%) Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 LS G N S+ K +++ L DQ+ ++ I EV++ + F + Sbjct: 164 LSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA--LDFSFAAGS 221 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + D +S G G+ + + AL+ + + L+ P + +S Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279 Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 GQ S + G + T + + ++ + G+ + P ++ G I L I + Sbjct: 280 GQKGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITS 339 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + A D+ + R TTV L G T++L GL G+P LSKIP++ Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422 G LF + + EE+ +++ +V+ + Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|17426227|ref|NP_510894.1| phage assembly protein [Enterobacteria phage M13] gi|138050|sp|P03665|G4P_BPM13 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|14969|emb|CAA23865.1| phage assembly protein [Enterobacteria phage M13] Length = 426 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 18/268 (6%) Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 LS G N S+ K +++ L DQ+ ++ I EV++ + F + Sbjct: 164 LSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA--LDFSFAAGS 221 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + D +S G G+ + + AL+ + + L+ P + +S Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279 Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 GQ S + G + T + + ++ + G+ + P ++ G I L I + Sbjct: 280 GQKGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITS 339 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + A D+ + R TTV L G T++L GL G+P LSKIP++ Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422 G LF + + EE+ +++ +V+ + Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|71906532|ref|YP_284119.1| type II and III secretion system secretin [Dechloromonas aromatica RCB] gi|71846153|gb|AAZ45649.1| type II and III secretion system protein:Secretin, N-terminal:Secretin/TonB, short N-terminal [Dechloromonas aromatica RCB] Length = 585 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 58/292 (19%), Positives = 101/292 (34%), Gaps = 53/292 (18%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----------------------- 218 + + + E QV L+ I EV + Q G S Sbjct: 264 DEYLKATQLVVERQVMLEAKIIEVSLNDSYQTGINWSKFGGIANRFSLGIAAPSATLAGS 323 Query: 219 --ITGSSSGPSKSFA-----ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 I+GS++G S A G G +F +L LE ++ Sbjct: 324 GVISGSAAGVSGGTAVAAVPGSGGAMATGPTGRGFFGLTFQSNNFAALLSFLEGQGDVQV 383 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSST-------------GATSVTTHDYGVVLHF 318 L+ P + + Q A G + T S+ ++ G+ L Sbjct: 384 LSSPRIATTNNQKAVLKVGTDDYFVTGISTNVTTGTGTGGNVVTPNITLQPFFSGISLDV 443 Query: 319 TPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYR-------VRKADTTVELPSGGTI 368 TP + G I L + VS VN GD+ +Y + ++D+ V + G + Sbjct: 444 TPQIDDEGNIILHVHPSVSVVEEKSKSVNLGDLGTYTLPLASSTINESDSIVRVQDGSIV 503 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + GL+ + + G+P +S +P LG LF + + E+ I +++ Sbjct: 504 AIGGLMSQEQNTNRYGLPGISGVPGLGLLFGQKSVSNRKRELVILMKSTVIR 555 >gi|83746420|ref|ZP_00943472.1| GspE-related protein [Ralstonia solanacearum UW551] gi|83726961|gb|EAP74087.1| GspE-related protein [Ralstonia solanacearum UW551] Length = 744 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 140/374 (37%), Gaps = 33/374 (8%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--HGMVRTIQDS 157 ++ D + L + I + A LE L ++ + + +M++ + +L +D Sbjct: 192 FILDKDVRPDLKTTVFIRQ--AKLEDALDLILSTTQLNKKMMNGSTILIYPNTPEKQRDY 249 Query: 158 Q----RAVELSETFLSQSGRN-----QYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVR- 206 Q RA L+ Q+G + + N++ I D V L + E++ Sbjct: 250 QDLVVRAFYLTNAEAKQTGAMLKTMLKIREPYIDERANMVVIRESPDVVRLAERLVELQD 309 Query: 207 RDILKQIGF------------QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 R+ + + Q I +S +A + Sbjct: 310 RNDSEVVLEVEVLEVSSTKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNSDRIGVS 369 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311 + VL+ LA P + A + + A G + T +S++ + SV D Sbjct: 370 TPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYID 429 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTI 368 G+ L P++ + ++I EVS + R A+T ++L G T Sbjct: 430 VGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHDGETQ 489 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +LAGL+K IP L IP+LG LF + N EI ++ TP +VKP + + Sbjct: 490 LLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPETN 549 Query: 429 RPDDHYSVEDDAKA 442 + E +A+A Sbjct: 550 FMEFWSGTETNARA 563 >gi|124514518|gb|EAY56031.1| putative type II secretion system protein D [Leptospirillum rubarum] Length = 610 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 47/320 (14%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 +E TLR+ I + + + + TV + G V+ + +QR +++ L + Sbjct: 271 DKMEGTLRKMIPKATVSADSKAQTVSVKGTVQDVFQAQRYLDIVRDQLRRE--------- 321 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGK 237 V ++ IAE+ G + S + A Sbjct: 322 ---------------VFFRIDIAEIDLTDKDAYGINWNALAHGVFNSTLALTGAGAGNAG 366 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 S GG + G F V+ ALE + + +P + +SGQ S + Y Sbjct: 367 LASTGGVTTPYGA--SFGSAAVIQALETIGRVHIINQPYVGTVSGQPVSLNATTDIPYLQ 424 Query: 298 V----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR-------IQTEVSEPV 340 S++ + G+ L TPT L ++ + +Q V+ + Sbjct: 425 GEYPFFAGGLSSATETIPQIGYVPVGINLEVTPT-LEGDQVHMHGTVVVNSLQQFVTIDI 483 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G+ P R T + G T+V+ GL+ + + +P L +IP+L LF Sbjct: 484 KGIGTFQNPEVNSRSQTTEITARDGQTVVIGGLMANTKNKTFWSVPFLGQIPVLKWLFSG 543 Query: 401 SRFNREETEIFIAATPFLVK 420 + ++ TE+ + TP + + Sbjct: 544 YSYKKQVTELVVIITPEIRR 563 >gi|78777581|ref|YP_393896.1| type II and III secretion system protein [Sulfurimonas denitrificans DSM 1251] gi|78498121|gb|ABB44661.1| type II and III secretion system protein [Sulfurimonas denitrificans DSM 1251] Length = 563 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 59/318 (18%), Positives = 105/318 (33%), Gaps = 61/318 (19%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231 ++ + L + QV + V + V K G S + + +F Sbjct: 226 EEYLKKLQDKVQLQVLIDVQLLSVTLSDGKTTGVDWSQLYNLQNMNLTFNKAKRTNVHGA 285 Query: 232 ---------------------------------ADFGGKFVSEGGDFSVKGVLDRFSFET 258 D G + + F+ Sbjct: 286 TWDSAYEGDTVEGLLLRDKRVEAAQSNIETYGLEDLAGVRTPVDATSKLLTISSNFTINN 345 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHD- 311 ++ L+ + +++ P + ++ Q A T+G ++ YK +S S G+ + D Sbjct: 346 IIKFLKTQGDVSSISNPKVLTLNNQPALITAGTEYFYKIISDSLSTAGTGGSVTTQNQDL 405 Query: 312 ----YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKADTTVE 361 GV+L TP + I L+I +SE ++ P R R+ + V Sbjct: 406 QSVFAGVLLDITPEISDDNMITLKINPSLSETTTDISITPGVERTMPPDLRRRQLSSVVT 465 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L G I+L GL+ +P+L IPIL LF+ + E+ I P +V Sbjct: 466 LRDGERIILGGLINTSNSIDVNKVPILGDIPILNYLFKYENRLKTTQELVIVIEPHIVT- 524 Query: 422 VAMRDLSRPDDHYSVEDD 439 +LS + Y Sbjct: 525 KRKNNLSLSELGYQTLSS 542 >gi|251773365|gb|EES53914.1| putative type II secretion system protein D [Leptospirillum ferrodiazotrophum] Length = 604 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 73/343 (21%), Positives = 124/343 (36%), Gaps = 52/343 (15%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 LE+TLR+ I + + + S TV + G VR + +QR +++ L + Sbjct: 264 DKLEITLRKTIPHAVVSADPKSQTVSVRGTVRDVYLAQRYLDIVRDQLRRE--------- 314 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---SSGPSKSFAADFGGK 237 V ++T+AE+ G S +S S + Sbjct: 315 ---------------VFFRITVAEIDLSDANAYGINWSAMAKGVFNSTLSLTSGGTSNAG 359 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + GG + G F V+ AL+ + L +P + +SGQ S + Y Sbjct: 360 LSATGGVATPYGA--TFGQTAVIQALDTIGRVHVLNQPYVGTVSGQPVSLNATTNIPYLQ 417 Query: 298 V----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR-------IQTEVSEPV 340 S++ + GV L TPT L +I L +Q V+ + Sbjct: 418 GEYPFFAGGLSSATETLPQIAYAAVGVNLEVTPT-LEGDQIHLHGTVVVNTLQQMVTINI 476 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + P R T + G TIV+ GL+ + + IP L IP L LF Sbjct: 477 KNIGEFQNPQINTRSETTEITAHDGQTIVIGGLMANTKNKQFWTIPFLGSIPGLKWLFSG 536 Query: 401 SRFNREETEIFIAATPFL-----VKPVAMRDLSRPDDHYSVED 438 + ++ TE+ I TP + + + ++ PD + + Sbjct: 537 YNYQKQVTELAILITPEIKKTPRLDAASTEEMMDPDGRFYRKS 579 >gi|153902280|dbj|BAF74221.1| protein IV [Enterobacteria phage f1] Length = 426 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 18/268 (6%) Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 LS G N S+ K +++ L DQ+ ++ I EV++ + F + Sbjct: 164 LSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA--LDFSFAAGS 221 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + D +S G G+ + + AL+ + + L+ P + +S Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279 Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 GQ S + G + T + + ++ + G+ + P ++ G I L I + Sbjct: 280 GQKGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITS 339 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + A D+ + R TTV L G T++L GL G+P LSKIP++ Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422 G LF + + EE+ +++ +V+ + Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|282856386|ref|ZP_06265665.1| putative type IV pilus biogenesis protein PilQ [Pyramidobacter piscolens W5455] gi|282585757|gb|EFB91046.1| putative type IV pilus biogenesis protein PilQ [Pyramidobacter piscolens W5455] Length = 566 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 114/330 (34%), Gaps = 51/330 (15%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L+ + + V+ + +V+ G + +R + L Sbjct: 260 LKELAELHSPANRVLVDERQNLIVVTGTAFQQEKVRRTLRL------------------- 300 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQI------GFQHSITGSSSGPSKSFAADFGG 236 L+ G QV LK I EV D Q+ + +G + A G Sbjct: 301 -----LDAPG-RQVMLKARIIEVNDDASDQLETALNAVYDWWWGSYQNGALSAGFAQSGR 354 Query: 237 KFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTA 279 K + G + L L R LA+PT+T Sbjct: 355 KPGTAEGALGNLDTSANLPGEIGSGIVQLAGTATRMLDFRLRTLVEQKKARVLADPTVTV 414 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EV 336 + G+ A+ + Y + + + G L TP + G I + + EV Sbjct: 415 LDGEKATVKLVEKLKYVSRRDDAQNPTYDDEEVGPKLEVTPRIGRSGMITVSVSLATGEV 474 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + + G +P R +T + + G V+ GL K+ + + +P+LS IP++G Sbjct: 475 IQWIRGGQGEQIPQTNSRTVETKIRVRDGEPFVIGGLFKESRSRTRASVPILSSIPLIGE 534 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRD 426 LF+ + +++ + P++++ + D Sbjct: 535 LFKAKLDKKTRSQVVMILIPYILEIPDLAD 564 >gi|138046|sp|P03666|G4P_BPF1 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|14983|emb|CAA23875.1| unnamed protein product [Enterobacteria phage f1] Length = 426 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 18/268 (6%) Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 LS G N S+ K +++ L DQ+ ++ I EV++ + F + Sbjct: 164 LSVDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA--LDFSFAAGS 221 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + D +S G G+ + + AL+ + + L+ P + +S Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279 Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 GQ S + G + T + + +V + G+ + P ++ G I L I + Sbjct: 280 GQKGSISVGQNVPFITGRVTGESANVNNPFQTVERQNVGISMSVFPVAMAGGNIVLDITS 339 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + A D+ + R TTV L G T++L GL G+P LSKIP++ Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422 G LF + + EE+ +++ +V+ + Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|330815113|ref|YP_004358818.1| secretion type II protein gspD [Burkholderia gladioli BSR3] gi|327367506|gb|AEA58862.1| secretion type II protein gspD [Burkholderia gladioli BSR3] Length = 847 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 74/413 (17%), Positives = 154/413 (37%), Gaps = 63/413 (15%) Query: 75 TKADVVVHSPRTMYLFG---KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR-- 129 DV+ S +LF K + + L ++ + L + Sbjct: 210 QIFDVISRSSGMNFLFDRDVKTDQRTTIFL----KNSTIDATVRYVLATNGLAQQVLDEN 265 Query: 130 ---FIADSNIRVEMVSDTVV------------LHGMVRTIQDSQRAVELSETFLSQSGRN 174 ++ +++ + V + ++TI + V + + Sbjct: 266 TVLIYPNTPAKLKDYQELAVRTFFLSNTEAKTIANTLKTILKVRDVVADEKLNMVIVRDT 325 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS---------------- 218 A ++++++L ++ + V L+V + EV+R+ +G Sbjct: 326 PDAIRMAERLVSLEDVPEPE-VMLEVEVLEVQRNNELNLGVAWPGSVNVTPLPLGSVIAP 384 Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV----------------LDRFSFETVLHA 262 +TG ++ + + G G G + S + ++A Sbjct: 385 VTGQNTNTNTPYYPYGYGGGFGGGFGGGSNGTSPALTMNDLLHQTVRTIGLSSLQATVNA 444 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHL-YKTVSSSTG--ATSVTTHDYGVVLHFT 319 + + ++ L P + + + A G + + + ++STG + SV D G+ L+ Sbjct: 445 NVQDSTVKLLTNPRIRVRNHEKAKILIGERVPNFTSTATSTGFLSQSVNYLDIGLTLNVE 504 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKD 376 PTV +G+++ EVS + + R A T ++L +G T VLAGL+ + Sbjct: 505 PTVYLDDTVGIKLALEVSSLGNTITTTTGTAAYQIGTRTASTVLQLKNGETDVLAGLIDN 564 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + + +P L ++P+LG LF + + TEI +A TP LV+ + D Sbjct: 565 EERTSGNKLPGLGQLPVLGRLFGATDDQAKNTEIVLAITPHLVRNIRRPDADL 617 >gi|254496546|ref|ZP_05109416.1| type II protein secretion LspD [Legionella drancourtii LLAP12] gi|254354245|gb|EET12910.1| type II protein secretion LspD [Legionella drancourtii LLAP12] Length = 482 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 116/283 (40%), Gaps = 26/283 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+V+ L+I Q+ ++ +AE+ ++ +G + + +G + F F Sbjct: 184 KRVIAQLDIK-PAQLLIEALVAEINQEDANDLGIEWG-SDQQTGKASGFRNGFA------ 235 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----- 296 + F+ ++AL RA L+ P++ + + A G Q Sbjct: 236 ----IINSQTKGADFQAQIYALARAHKANILSTPSVVVLDNRQAKILVGKQVSVASSNYP 291 Query: 297 -----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMP 349 T +SS+ T+ + + L+ P + I ++I +P + P Sbjct: 292 NNANGTAASSSPYTTFDRVNVALHLYVRPQITRGNGIQMQIDQGNDTLDPPVAAETSTTP 351 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++R+ T+V + SG +VL GL +D + +P+L IP +G LF+ + R++ Sbjct: 352 TFRISSIVTSVHVESGNVVVLGGLTQDSLSNDNNRLPILGDIPGIGRLFKRNVNTRDKRV 411 Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 + + P +++ +++ D Y+ + + R + Y Sbjct: 412 LMVFIKPIILRN-ERENMNLTHDKYNHTRQYELDWL-RSEEQY 452 >gi|138047|sp|P03664|G4P_BPFD RecName: Full=Virion export protein; AltName: Full=Gene 4 protein; Short=G4P; Flags: Precursor gi|8489183|gb|AAF75602.1|AF217317_5 morphogenetic protein IV [Filamentous phage cloning vector fd-tet] gi|215404|gb|AAA32312.1| IV [Enterobacteria phage fd] gi|8698959|gb|AAF78531.1| protein IV [Filamentous phage display vector fMCS1] gi|21667075|gb|AAM73892.1| morphogenetic protein IV [Filamentous phage display vector f8-5] gi|21667089|gb|AAM73904.1| morphogenetic protein IV [Filamentous phage display vector c8-4] gi|223541|prf||0812197E DNA,phage Length = 426 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 18/268 (6%) Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 LS G N S+ K +++ L DQ+ ++ I EV++ + F + Sbjct: 164 LSVDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA--LDFSFAAGS 221 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + D +S G G+ + + AL+ + + L+ P + +S Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279 Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 GQ S + G + T + + +V + G+ + P ++ G I L I + Sbjct: 280 GQKGSISVGQNVPFITGRVTGESANVNNPFQTVERQNVGISMSVFPVAMAGGNIVLDITS 339 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + A D+ + R TTV L G T++L GL G+P LSKIP++ Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422 G LF + + EE+ +++ +V+ + Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|330444063|ref|YP_004377049.1| type III secretion protein SctC [Chlamydophila pecorum E58] gi|328807173|gb|AEB41346.1| type III secretion protein SctC [Chlamydophila pecorum E58] Length = 908 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 68/326 (20%), Positives = 124/326 (38%), Gaps = 53/326 (16%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235 ++N L++ QV ++V I + + G Q G+ S S S ++ Sbjct: 573 LLNGLDLP-PKQVYIEVLILDTSLEKSWDFGVQWVALGNEQSKVAYASGLLSNSVISNTA 631 Query: 236 GKFVSEG----GDFSVK--------------------GVLDR---------FSFETVLHA 262 V G G S+ G++ + +L A Sbjct: 632 KATVPPGVPTPGSLSLPTPAQMTGFSDMMSSSSAFGLGIIGNVISHKGKSFLTLGGLLSA 691 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---STGATS--VTTHDYGVVLH 317 L++ + P + A Q ASF G Y+T S+ TG+ + + D GV L Sbjct: 692 LDQDGDTIIVLNPRIMAQDTQQASFFVGQNIPYQTTSTIIQETGSVTQNIEYEDIGVNLV 751 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 T TV + L+I+ +SE + P A T +++P G +V++G ++D Sbjct: 752 VTSTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRMQVPDGCFLVMSGHIRDK 810 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 ++ G+PLL+ IP++ LF + R++ I + P ++ + Y Sbjct: 811 TTKIVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGSDLTNKEGYRYN 870 Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQ 463 +A+A + P+ A E + Sbjct: 871 WEAEA-----GSMQVAPRPAPECQRP 891 >gi|149178109|ref|ZP_01856704.1| general secretion pathway protein D (Precursor) [Planctomyces maris DSM 8797] gi|148843029|gb|EDL57397.1| general secretion pathway protein D (Precursor) [Planctomyces maris DSM 8797] Length = 1307 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 65/427 (15%), Positives = 145/427 (33%), Gaps = 42/427 (9%) Query: 57 VIILQVPVDVQDVLVS-DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 + + +D Q L++ DP R + + + + + +++ Sbjct: 841 SVAINEFLDTQRALIAQDPDLISSFELLEREVIVVPEAI----------NNNLIISATPR 890 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 I++L L + I+ +++ + + + L ++ L Sbjct: 891 YFEQISNLVKQLDKEAPQVIIQA------LIVEVELDNDDEFGVELGLQDSLLFNRSIID 944 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 + + + N+ +Q + E L +++ + + A Sbjct: 945 NVLTVQQTITGQNNVTQTNQTIVS---QEATPGFLFNSINPLGTNNTNNVSNTAGQALSN 1001 Query: 236 GKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 D G++ S ++ AL + L+ P + + +A G Sbjct: 1002 FSLQRGNSDLGFGGLVLSASSESVSILIRALAAKRNVHVLSRPQIRTVDNVTAQIQVGQI 1061 Query: 293 HLYKTVSSSTGATS----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------- 338 S T S + + G++L TP + G I + Q E S+ Sbjct: 1062 VPVVNGVSVTAVGSANPVIQQSEAGIILTVTPRISPDGNIVMETQAEKSDFNGSSVPIFT 1121 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 N + P + + TTV +P+G T+VL G++ + ++ +P L IP++G F Sbjct: 1122 DATTGNVVESPIKNITQVQTTVSVPNGQTVVLGGMITESDTTIERKVPWLGDIPLIGIPF 1181 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 R + E+ + TP +++ A + + VE + + +++GP A Sbjct: 1182 RYDYSSTRRKELLVFLTPRIIRNDADSEFIK-----QVESERIHLQVEKAEQMHGPIFAV 1236 Query: 459 EVEGQNY 465 + Sbjct: 1237 PPGEPEF 1243 >gi|77458214|ref|YP_347719.1| type II and III secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77382217|gb|ABA73730.1| putative general secretion pathway protein D [Pseudomonas fluorescens Pf0-1] Length = 615 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 82/427 (19%), Positives = 159/427 (37%), Gaps = 49/427 (11%) Query: 53 GLNKVIILQVPVDVQ-DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111 GLN + + D++ + V D D V + L K V + +++ +++ + Sbjct: 205 GLNFIFDKDLRPDMKATIFVRDVRIEDAVQLLLQQNQLHQKVVNENTLLIFPDSPQKLKD 264 Query: 112 LDILI-------ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 L+ D ++ + ++ V+ +T+ T++D++ AV ++ Sbjct: 265 YQELVMRTFYLTSIDANTALNMIKTMLKTRDVFVDERLNTL-------TMRDTEDAVRMA 317 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 E L ++ +VM + + +G Q T Sbjct: 318 EKLLQSQDQSNPEVVLEVEVMEVAT------------------QRILDLGLQWPNTFGVV 359 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 S + + + + S + ++A + I TLA P + + + Sbjct: 360 NSDGS-----AVTILDQLKGINSSRISISPSPQAKINA--QDNDINTLASPVIRVSNREQ 412 Query: 285 ASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 A G + + +S SVT D G+ L PTV + ++I EVS Sbjct: 413 ARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPTVHLNNEVAIKIALEVSN 472 Query: 339 --PVIGVNAGDMPS-YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 P+ G +P R A T++ L G T +LAGL+++D IP L IP LG Sbjct: 473 ATPLEPTRQGTIPVQVDTRNAQTSLRLHDGETQILAGLMRNDHGATGNKIPGLGDIPGLG 532 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 LF +++ ++E+ ++ TP +V+ + + S + E +R P Sbjct: 533 RLFGSNKDTIGKSELVLSITPRIVRNLPYQSPSDMEFPTGTETSMHIQAPDRSQSYSMPA 592 Query: 456 EASEVEG 462 A++ Sbjct: 593 PAAQPRA 599 >gi|30249573|ref|NP_841643.1| general (type II) secretion pathway (GSP) D protein [Nitrosomonas europaea ATCC 19718] gi|30138936|emb|CAD85515.1| General (type II) secretion pathway (GSP) D protein [Nitrosomonas europaea ATCC 19718] Length = 763 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 94/450 (20%), Positives = 158/450 (35%), Gaps = 66/450 (14%) Query: 51 SIGLNKVIILQVPVDVQ-DVLVSDPTKADV------------VVHSPRTMYLF----GKN 93 + G+N V V + + V D + DV V + T+ ++ K Sbjct: 206 TAGINFVFDRNVQQEATASIFVRDNSIEDVLKLMLLTNQLAYKVLNSNTLLIYPDTPAKQ 265 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 + + + + D+ + +R + +I V + V+ Sbjct: 266 K--------DYQELVVRSFHVA-NTDVKQMVAMIRGLVKARDIYVNEKLNLFVIR----- 311 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D+ + L E ++ +N + +V L V + EV+RD + Sbjct: 312 --DTLEMIRLVERLVA------------------INDFPDPEVMLDVVVLEVKRDSTLDL 351 Query: 214 GFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----ETVLHALERATA 268 G + + S P A V + G SF + + T Sbjct: 352 GPNMPTSVTFSAVPGIGTPAQAAADSVVKMSMIKNTGFEGLRSFTISNQARIDFGRTLTN 411 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSP 325 LA P + S + A G + TV+++ A S T D G+ P V + Sbjct: 412 ADVLANPRIRVKSREKAKIHIGNKEPVFTVTNTANVGSAASATYIDVGLKFEVEPVVRTN 471 Query: 326 GRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 + L+ EVS + G NA R A+T +EL G T VLAGL++DD+ Sbjct: 472 NEVTLKALLEVSSNLGEKRSGSGENAATAIVIGTRTAETVLELRDGETQVLAGLIQDDLS 531 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 +++ GI L+ IP+LG +F +TEI + TP +V+ V + + YS Sbjct: 532 RVRSGIAGLTDIPVLGDIFSKQVRKHNKTEIILLITPHIVRNVIQPN-HFESEFYSGTAS 590 Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 A + K A E G Sbjct: 591 AAGKLPVTIRKTAPRSLAMESSNSASDGGY 620 >gi|320355296|ref|YP_004196635.1| type II and III secretion system protein [Desulfobulbus propionicus DSM 2032] gi|320123798|gb|ADW19344.1| type II and III secretion system protein [Desulfobulbus propionicus DSM 2032] Length = 586 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 52/271 (19%), Positives = 96/271 (35%), Gaps = 33/271 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +N L + QV ++ I EV +IG S S + G+ Sbjct: 316 DDYINNLKKSLYKQVNIEAKIIEVYLQDNSKIGLDWSSVLKDFQISATTFFGNNGQVHPR 375 Query: 242 --------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F + + +F+ L+ALE LA P LT ++GQ A + G Sbjct: 376 TTADPDDFSNTFVSRVEIPSLTFDVFLNALEEQGDTHVLANPKLTVLNGQPAIISVGKDV 435 Query: 294 LYKTVSSSTGATSVTTHDY---------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 Y + + Y G+ L ++L ++ L + ++ + Sbjct: 436 AYIKSVTREKDSDTEDITYSAEVGNVVQGIALGVMASILDENKVILHLTPITTDLANATS 495 Query: 345 AGDMPSYRV----------------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 G++P + R+ T VE+ +G +++ GL+ + P L Sbjct: 496 DGEVPITTIGEGETAMSLGLPQVKVREMSTMVEVENGEMLIIGGLIDSIEGKTGAFAPGL 555 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 IP++ LF ++ E+ I TP ++ Sbjct: 556 GSIPVVKYLFGVEEKTLQKRELVILLTPRII 586 >gi|313683362|ref|YP_004061100.1| type ii and iii secretion system protein [Sulfuricurvum kujiense DSM 16994] gi|313156222|gb|ADR34900.1| type II and III secretion system protein [Sulfuricurvum kujiense DSM 16994] Length = 494 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 104/265 (39%), Gaps = 29/265 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ ++ + L QV ++ + E+ + IG S S + + + Sbjct: 220 TNVEQYLAALKKRMHQQVMIEAHLIELTYNDYSSIGVNWS------NFSLALNGSYTNSY 273 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + G V F+ ++ L++ + L+ P + +S Q A G Q Y Sbjct: 274 NNIGTAHPVYSFGIDFNPTGLIDFLKQYGDVEVLSNPKVLTLSNQPAIINVGKQLSYLYQ 333 Query: 299 SSSTGATSVT---------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM- 348 + S T+ T + G+ L+ P V G I +RI SE + Sbjct: 334 NGSIIGTTSTPTTVTNTLGSVFVGLTLNIIPEVSEDGYIIMRINPVSSELLSDSELSSSS 393 Query: 349 -------------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 P RV++ + V++ +++ GL++ + + +PLL IP+ G Sbjct: 394 SQTSQTQTDRVMPPDTRVKQMSSIVKVKDSQKVLIGGLIEKKNYKNQTKVPLLGDIPLFG 453 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 LF NS ++E+FI TP LVK Sbjct: 454 KLFHNSTDTIRKSELFILITPILVK 478 >gi|262064173|gb|ACY07155.1| IV [Enterobacteria phage f1] Length = 426 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 18/268 (6%) Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 LS G N S+ K +++ L DQ+ ++ I EV++ + F + Sbjct: 164 LSIDGSNLLVVSTPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA--LDFSFAAGS 221 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + D +S G G+ + + AL+ + + L+ P + +S Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279 Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 GQ S + G + T + + ++ + G+ + P ++ G I L I + Sbjct: 280 GQKGSISVGRNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITS 339 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + A D+ + R TTV L G T++L GL G+P LSKIP++ Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422 G LF + + EE+ +++ +V+ + Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|74316567|ref|YP_314307.1| putative Type II secretory pathway component PulD [Thiobacillus denitrificans ATCC 25259] gi|74056062|gb|AAZ96502.1| putative Type II secretory pathway component PulD [Thiobacillus denitrificans ATCC 25259] Length = 581 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 111/269 (41%), Gaps = 24/269 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++ ++ + + + QV ++ TI EV + G S + G ++ Sbjct: 296 QQYLDRVMQSAQRQVLIEATIVEVTLKDQYRAGIDWSKALEGTTGWTINTLSGGSNALAN 355 Query: 242 GGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 ++ F + LE + L+ P L A++ Q+A +Y V Sbjct: 356 TLTPFIQATYTNAGSNGFTAAIDLLESFGKAKVLSSPKLMALNNQTALLKVVDNLVYFNV 415 Query: 299 SSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-- 345 + T AT+ T G+V+ TP + G + L ++ +S V V Sbjct: 416 KADTTATANVGTTTTFTTTPQTVPVGIVMTMTPQINENGMVSLTVRPTISRNVGFVRDPN 475 Query: 346 --------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 +P +VR+ ++ +++ SG T++L GL++DD ++GIP LS+ +GA+ Sbjct: 476 PSIPVAIPNQVPVIQVREMESLLQVRSGQTVILGGLIQDDSNNARDGIPGLSRPEGIGAV 535 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426 F +TE+ I P +V ++ D Sbjct: 536 FGQHEQINSQTELVIFLRPIVVANPSLED 564 >gi|149197164|ref|ZP_01874216.1| secretion protein XqhA [Lentisphaera araneosa HTCC2155] gi|149139710|gb|EDM28111.1| secretion protein XqhA [Lentisphaera araneosa HTCC2155] Length = 738 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 17/247 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 A QV ++VT EV + GF+++ T G G+ Sbjct: 466 APAMQVMIQVTAVEVELGEGLEFGFEYAATDKFGSGDNESGVGVGSSTADTPSFGPPGGL 525 Query: 251 LDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 S + A+ ++ L P + ++G+ A G + ++ Sbjct: 526 DPGISLLLQSAGVDNEFAFVQAVAGDSSSELLFTPHILTLNGEEAEINIGQNVPVRAGTT 585 Query: 301 STGATS----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRV 353 ST + + + GV+L P V + + L + +S V D PS+ Sbjct: 586 STSSNNDFEQIEYRSTGVLLRVLPQVSADKYVTLDTEIVISSIVEQSPEEVLIDSPSFNE 645 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 K T + + + TI+L G+++ + G+P L IP +G LF+++ E E+ I Sbjct: 646 NKVTTKLLIKNNETILLGGIIQKVASESTSGVPFLKDIPGIGFLFQSATTGSREKELVIF 705 Query: 414 ATPFLVK 420 +++ Sbjct: 706 IKATVIE 712 >gi|15834670|ref|NP_296429.1| type III secretion protein SctC [Chlamydia muridarum Nigg] gi|7190084|gb|AAF38934.1| type III secretion protein SctC [Chlamydia muridarum Nigg] Length = 672 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 54/333 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------- 225 ++ KV++LLN QV ++V I E + G Q + G G Sbjct: 328 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLS 387 Query: 226 ----------PSKSFAADFGGKFVSEGGDFSV------------KGVLDR---------F 254 + A + G + G + G++ Sbjct: 388 NTGVVDPLRNQTPPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYL 447 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309 + +L AL++ + P + A Q ASF G ++T S+ + ++ Sbjct: 448 TLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGSVTQNIEY 507 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T T+ + L+I+ +SE + P A T +++P G +V Sbjct: 508 EDIGVNLVVTSTIAPNNVVTLQIEQTISE-LHSAQGVLTPVTDKTFAATRLQVPDGCFLV 566 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D + ++ G+PLLS +P++ LF + R++ I I P ++ + Sbjct: 567 MSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVISSFEEGTVLS 626 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 + Y +++ R + P+ A E + Sbjct: 627 NSEGYRYNWESE-----RGSLEVAPRHAPECQN 654 >gi|298527693|ref|ZP_07015097.1| type II and III secretion system protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511345|gb|EFI35247.1| type II and III secretion system protein [Desulfonatronospira thiodismutans ASO3-1] Length = 553 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 57/270 (21%), Positives = 105/270 (38%), Gaps = 31/270 (11%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 + + L QV + I EV Q+G S + +++ + G + Sbjct: 282 ANNFIKQLKSKLSQQVVIDAQILEVSLSDSFQLGVDWSYISQELASNFAYSVNLGWQSAQ 341 Query: 241 EGGDFSV-------------KGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSA 285 G + + G +D F + ALE + ++ P + + Q A Sbjct: 342 GFGTYGLESEDPVPIVIDSRTGDVDEVYRQFSATIQALETFGQVSVVSNPHVRSRHLQPA 401 Query: 286 SFTSGG-QHLYKTVSSSTGATSVTTHDY---------GVVLHFTPTVLSPGRIGLRIQTE 335 TSG ++ + ++ S AT DY GV+L P + G + L I Sbjct: 402 LVTSGTTRNFIQEITRSRRATDEDWVDYSVNTGTAFEGVMLGVVPFITDNGDVDLDIFPI 461 Query: 336 VSEPVIGVNA------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 S+ + A +P VR +T V + G T++L GL++ ++ + P S Sbjct: 462 TSQVDLSETAKIGGDQITLPKVNVRNVNTKVRVNDGDTVILGGLIQKGSRERERATPGAS 521 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 +IP LG LF+ +++ +E+ + +V Sbjct: 522 RIPGLGWLFKQREDSQDLSELVVIMHVRVV 551 >gi|297181980|gb|ADI18156.1| type II secretory pathway, component puld [uncultured Verrucomicrobiales bacterium HF0200_39L05] Length = 800 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 105/309 (33%), Gaps = 66/309 (21%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI-------------TGSSSGPSKSFAADFGGKFVSE 241 QV ++ I V ++G + + GPS + AA V+ Sbjct: 437 QVLIEAIIVNVTLTDGMEMGVNAFMHEAAGPGDTRHIGGFMNGGPSTAGAAPSTPPTVNN 496 Query: 242 G--------------------GDFSVKGVLDRFS--------FETVLHALERATAIRTLA 273 G G + FS E + AL +++ + L Sbjct: 497 GAEQGGGDNVSNVAAAAGNALGSLGAGALSGGFSYISRYDNSLEFAMSALANSSSAKVLQ 556 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS----------------SSTGATSVTTHDYGVVLH 317 P + A+F +G Q Y+ S G + G+ L Sbjct: 557 TPRVQTSHAVPATFFNGEQVPYQGSSGYGGYGGGYGGYGGYGGYGGGGYTQFLNVGITLD 616 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSYRVRKADTTVELPSGGTI 368 TP + + + IQ +SE ++ G P R+A +TV + G TI Sbjct: 617 VTPYITPDDLVVMEIQQTISELDGFIDMGGGQQGSSGMKAPQTTEREAASTVSVRDGDTI 676 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 +L G +++ + G+P L IP+LG LF+N + +E+ + P ++K L Sbjct: 677 LLGGFIRNSKTGTESGVPFLKDIPLLGNLFKNESNTNKRSELLVLIRPTILKSPEDAALI 736 Query: 429 RPDDHYSVE 437 + + Sbjct: 737 VSQERQRLP 745 >gi|197286852|ref|YP_002152724.1| hypothetical protein PMI3025 [Proteus mirabilis HI4320] gi|227354961|ref|ZP_03839372.1| competence protein E [Proteus mirabilis ATCC 29906] gi|194684339|emb|CAR45956.1| putative exported protein [Proteus mirabilis HI4320] gi|227164748|gb|EEI49595.1| competence protein E [Proteus mirabilis ATCC 29906] Length = 371 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 63/317 (19%), Positives = 113/317 (35%), Gaps = 30/317 (9%) Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 R V V+ + +G+ + A++ LS + S + Sbjct: 60 HRIYPLQYADVTTVAQQLTNYGISLLSDHGRIAIDKDSNSLSIIDTEKAHTEISDWL--K 117 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAA--DFGGKFVSE 241 + + QV + I +D L ++G Q + S G S + + ++ Sbjct: 118 IKETPQQQVHITAHIISSSQDALNELGTQWGLLNMKSANLEGTSNNTTTPHNIASAPLTA 177 Query: 242 GG-----------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 F++ + R + + +A P LTA ++ Sbjct: 178 PSLAALALHQKTKNPLHYIAFNIARINSRLLELELSALEQEKQLA-IIASPRLTAAHEKT 236 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 AS G + Y VS V + + + TP + +I L ++ + P I + Sbjct: 237 ASIKQGTEIPY--VSRDNDTIRVEFKEAVLGMEVTPIIQRSNKIRLLLKISQNTPGIALV 294 Query: 345 AGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G S ++ T V + G T++L G+ + QQ IP LS +P+LG LF + R Sbjct: 295 QGGSEHLSIDKQEIMTEVTIHDGETLMLGGIFQQKQQQHAAKIPFLSSLPLLGILFSHKR 354 Query: 403 FNREETEIFIAATPFLV 419 E+ I TP L+ Sbjct: 355 DQHSRHELVIFITPKLI 371 >gi|307297353|ref|ZP_07577159.1| type II and III secretion system protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916613|gb|EFN46995.1| type II and III secretion system protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 3898 Score = 153 bits (387), Expect = 6e-35, Method: Composition-based stats. Identities = 58/330 (17%), Positives = 131/330 (39%), Gaps = 38/330 (11%) Query: 104 HDGKQMLNLDIL--IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 G++ +++++ + ++ L + F + + V+ +V+ G+ ++ Sbjct: 3595 KAGEEPTDVELVYRVYHNVEELTRLI-EFYGGEVLS-DPVNGYIVVRGLAKS--RVDNIF 3650 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + + LSQ + QV ++ + + Q + SI Sbjct: 3651 DEIGSALSQP---------------------KKQVRIETRLVDESLIDEIQREIKTSIGI 3689 Query: 222 SSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 ++ + S DFG + + +++ + + +R ++ P++ Sbjct: 3690 NAPEILIENGSVDLDFGIIDYLDITQL-IDDLVNTGTVKIEADLSDRDNDSDLISSPSIV 3748 Query: 279 AISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 ++SG+ A G Y + + ++ + GV L TPTV G+I L + Sbjct: 3749 SMSGEEAKIHIGDTIPYLVRTIEYVEGNPVEIETIEYLNTGVELRITPTVNDDGKILLDL 3808 Query: 333 QTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 +VSEP V+ + + R+A++ + + G T+ + GL+ + +P LS + Sbjct: 3809 FIKVSEPEKYVDGTRTLYGEKTREANSRLIISDGNTLTIGGLVANKDTVTVNKMPFLSDL 3868 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P +G LF ++ E+ I T +V+P Sbjct: 3869 PFIGKLFTTENKTSDKRELVIFITAEVVEP 3898 >gi|307823412|ref|ZP_07653641.1| type II and III secretion system protein [Methylobacter tundripaludum SV96] gi|307735397|gb|EFO06245.1| type II and III secretion system protein [Methylobacter tundripaludum SV96] Length = 554 Score = 153 bits (387), Expect = 6e-35, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 91/255 (35%), Gaps = 17/255 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + ++ QV L+ I EV D Q G GG Sbjct: 273 ESFLSATQTQISRQVILEAKILEVTLDDNHQDGVNWESIVKEGINKAPLLTGIGGVMDPN 332 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--S 299 F + +E L+ P ++ ++ QSA G + T Sbjct: 333 TFASVFTLGAHSGDFRAFVELMETQGKTNVLSSPRISTLNNQSAIIKVGQDEYFATGFNG 392 Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + GAT V G+ L TP + I L I +S+ + Sbjct: 393 GTPGATGVAPTAPTVLIDVFFSGISLDVTPQIDDNEDITLHIHPSISQVKKDTKDFGLDI 452 Query: 351 ------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 VR++D+ V+ +G IVL GL++++ + K+G+ L+ IP +G LFR + Sbjct: 453 TLPLALTTVRESDSIVKAKNGQIIVLGGLMQENDNEKKQGVTGLAAIPYIGNLFRVNTGT 512 Query: 405 REETEIFIAATPFLV 419 +++E+ I + Sbjct: 513 TQKSELIILLKASFI 527 >gi|32266614|ref|NP_860646.1| hypothetical protein HH1115 [Helicobacter hepaticus ATCC 51449] gi|32262665|gb|AAP77712.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 533 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 103/268 (38%), Gaps = 20/268 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---ADFGGKF 238 ++ + LN + QV + V I V+ + G + A G Sbjct: 241 ERYIAQLNDKIQKQVLIDVHILNVQHTDNQTYGIDWNEFYKLGNIMTLPAEHQNTSSGSI 300 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295 S GG F++ + ++ L+ +++++ P + ++ Q A + G Y Sbjct: 301 DSSGGRFAINIFSQGVNINRIVEFLQTYGKVQSISNPKVLTLNNQPAIISVGSVLRYSQN 360 Query: 296 -------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT------EVSEPVIG 342 + S + + + G++L TP++ G+I L+I ++S Sbjct: 361 TTYQTTTQGTSVQNNSQAFPSVFAGILLDVTPSI-KDGKIILKINPSITKTKDISIENQT 419 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + P+ ++ + V+L G IVL GL+ Q IP+L IP + F + Sbjct: 420 IALNAPPNLSTKQLSSLVQLKDGEQIVLGGLIDKTEGQTTRKIPILGDIPFVKYFFSYKQ 479 Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430 +E E+ I P +V+ A + P Sbjct: 480 NIKETQEMVIIIAPHIVRLDANETAASP 507 >gi|26990190|ref|NP_745615.1| type II and III secretion system protein [Pseudomonas putida KT2440] gi|24985131|gb|AAN69079.1|AE016541_7 secretion protein, putative [Pseudomonas putida KT2440] Length = 621 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 140/376 (37%), Gaps = 39/376 (10%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + D + + I + +E + + + +R ++V+D V+ + Q ++ Sbjct: 212 FIFDKDLRPDMKATIFVRE--VRIEDAIALLLEQNQLRQKIVNDNTVMV-YPDSPQKTKD 268 Query: 160 AVELSET--FLSQSGRNQYANSSSK-------KVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 EL +L+ N N V LN + V +AE Sbjct: 269 YQELVMRTFYLTSIDANTALNMVKTMLKTRDVFVDERLNTLTMRDTSDAVRMAEKLLQSQ 328 Query: 211 KQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVLDRFSFE------ 257 Q + + + S D G G +G SV L + Sbjct: 329 DQSNPEVVLEVEVMEVATSRILDLGLQWPNTFGVLSDDGNPVSVLDQLKGINSSRISIAP 388 Query: 258 ---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT 308 ++A + I TLA P + + + A G + + +S SVT Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS-YRVRKADTTVELPSG 365 D G+ L PTV + +++ EVS P+ G +P R A T++ L G Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ + + Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLPYQ 566 Query: 426 DLSRPDDHYSVEDDAK 441 S + E + Sbjct: 567 SPSDMEFSTGTESAMQ 582 >gi|269302489|gb|ACZ32589.1| type II/III secretion system protein [Chlamydophila pneumoniae LPCoLN] Length = 919 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 122/338 (36%), Gaps = 57/338 (16%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------SI 219 NQ ++N L++ QV ++V I + + G Q + Sbjct: 574 NQGNVDRVVSLLNGLDLP-PKQVYIEVLILDTSLEKSWDFGVQWVALGDEQSKVAYASGL 632 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------ 255 ++ + + A G G L FS Sbjct: 633 LNNTGIATPTKATVPPGTPNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGNVLSHKGKS 692 Query: 256 ---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSV 307 +L AL++ + P + A Q ASF G Y+T ++ T ++ Sbjct: 693 FLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQETGTVTQNI 752 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D GV L T TV + L+I+ +SE + + P A T +++P G Sbjct: 753 DYEDIGVNLVVTSTVAPNNVVTLQIEQTISE-LHSASGSLTPVTDKTYAATRLQIPDGCF 811 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA--MR 425 +V++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++ R Sbjct: 812 LVMSGHIRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTR 871 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 ++ Y+ E D + P+ A E +G Sbjct: 872 VTNKEGYRYNWEADEGSM-------QVAPRHAPECQGP 902 >gi|94968501|ref|YP_590549.1| type II and III secretion system protein [Candidatus Koribacter versatilis Ellin345] gi|94550551|gb|ABF40475.1| type II and III secretion system protein [Candidatus Koribacter versatilis Ellin345] Length = 808 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 101/273 (36%), Gaps = 33/273 (12%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----------SITGSSSGPSK 228 S ++++ L+ +V ++ + R ++++G Q S ++ S Sbjct: 536 SLDRLISQLD-RKTQEVEIEARVVAATRTFVRELGIQLGGGWGGASTSVSGNPNAGFGST 594 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFS---------------------FETVLHALERAT 267 +F G S G F+ + L A E+ Sbjct: 595 NFKNPAGQPITGAPFPISTTGAFPLFTNFQVLNPTAGLELINIGHSYGLDLYLSAAEQRG 654 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ L+ P + + +A G + T+S G +VT D + L TP + Sbjct: 655 LLKILSRPRVVTQNNVTALVRQGFRLPVVTLSQLNGPPTVTYVDAFLRLTVTPQITVENT 714 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I L + E + P P ++ T V + GGT+ + G+++ + +P+ Sbjct: 715 IFLAVDVENTTPDFTRTVLGNPILLTQQTTTQVLVTDGGTVTIGGVVQTQNTLTSQEVPI 774 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L IPIL LF + N + E+ TP +V+ Sbjct: 775 LGDIPILKYLFMHKTTNTQTQELIFFITPKIVQ 807 >gi|167947465|ref|ZP_02534539.1| general secretion pathway protein D [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 241 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 94/239 (39%), Gaps = 30/239 (12%) Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVL---- 251 ++ IAEV D K +G Q + GS SG + + G +S+ + GVL Sbjct: 2 LVEAIIAEVSFDKTKDLGVQWIVDGSPSGNTAPVGIINLGTPKISDIAGAAAAGVLPSIP 61 Query: 252 ---------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 F ++ ALE ++ L+ P++ + Q A + Sbjct: 62 SGTLIGLGKFFXPPGSGVDFAMLIRALESDSSSNILSTPSILTLDNQEAEIVVAKNVPFL 121 Query: 297 TV---------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 T +S ++ D G+ L TP + I L I+ EVS +AG Sbjct: 122 TGQYASTGASSTSVNPFQTIQRQDVGLTLRVTPQINEGNAIQLSIEQEVSSIDPTTSAGT 181 Query: 348 M-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 R T V + TIVL GL+ + +QQ+ E +PLL IP +G LFR + Sbjct: 182 TDIVTNKRTIKTVVMVEDSHTIVLGGLIDEQLQQVDERVPLLGDIPGVGVLFRARNNQQ 240 >gi|162417759|ref|YP_001604484.1| type III secretion outer membrane pore YscC [Yersinia pestis Angola] gi|294496845|ref|YP_003560542.1| type III secretion outer membrane pore YscC [Yersinia pestis Z176003] gi|162354779|gb|ABX88726.1| type III secretion outer membrane pore YscC [Yersinia pestis Angola] gi|294352433|gb|ADE66490.1| type III secretion outer membrane pore YscC [Yersinia pestis Z176003] Length = 612 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 123/334 (36%), Gaps = 16/334 (4%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVE 162 + + D + + L+R ++D+ I+ V + + + + Q A Sbjct: 199 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIPQAATRASAQAKVEADP 256 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + + + +++++ L+ + + ++I ++ D L ++G + G Sbjct: 257 SLNAIIVRDSPERM--PMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 312 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279 +G + G + + ++ ++D + ++ LE + + ++ PTL Sbjct: 313 RTGNNHQVVIKTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLT 372 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336 A Y + + YG +L TP VL+ G I L + E Sbjct: 373 QENAQAVID--HHETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIED 430 Query: 337 SEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + D +P+ DT + G ++++ G+ +D++ +PLL IP LG Sbjct: 431 GNQKPNSSGIDGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLG 490 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ALFR T P ++ L+ Sbjct: 491 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 524 >gi|262284505|gb|ACY41042.1| VscC [Vibrio alginolyticus] Length = 624 Score = 153 bits (386), Expect = 8e-35, Method: Composition-based stats. Identities = 64/320 (20%), Positives = 118/320 (36%), Gaps = 25/320 (7%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----- 174 + + L+R ++ +V S V + +V T ++ G N Sbjct: 213 VPGIASVLKRVVSGVQTQVTSASSKEVTSSDKPVKSNKTASVHGGATVEAEPGLNAIIVR 272 Query: 175 --QYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---S 227 Q +K++ L+ + Q ++V +I ++ + L Q+G S Sbjct: 273 DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGVSVGNNRIVD 329 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284 D V+ G + K +LD + + LE + + ++ PTL Sbjct: 330 IKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVE 389 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339 A + K V T A + YG +L P ++ I L + E Sbjct: 390 AVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPEINLSLHLEDGAK 447 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + D+PS R + T + G ++++ G+ +D++ +PLL IP LGALFR Sbjct: 448 IADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 507 Query: 400 NSRFNREETEIFIAATPFLV 419 ++ + T P +V Sbjct: 508 SNTNTKRRTVRMFILEPRIV 527 >gi|171910644|ref|ZP_02926114.1| type II/III secretion system protein [Verrucomicrobium spinosum DSM 4136] Length = 816 Score = 153 bits (386), Expect = 8e-35, Method: Composition-based stats. Identities = 70/372 (18%), Positives = 120/372 (32%), Gaps = 105/372 (28%) Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 D AV ++ T Q + + L Q+ + EV + ++GF Sbjct: 411 DGSSAVFVAATSQLIVRNTQPNLDQVEAFVEGLTKQVPQQIYITTKFVEVSQKNTDELGF 470 Query: 216 QHSITGSSSG-----------------------PSKSFAADFGGKFVSEG---------- 242 I G G P G V+ G Sbjct: 471 DWLIGGFDIGGRAFGSGGTTGNSSNGPVSSSNYPFSQSGVPIGQNPVTAGLRSGTSAIAA 530 Query: 243 ------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G F++ GV F+ V+ AL + + ++ P++T SGQ Sbjct: 531 DSIDGLISGQSLVSSAAPGVFALAGVFTDPQFQVVIRALSQKKGVDLMSAPSVTTRSGQR 590 Query: 285 ASFTSGGQHLYKT-----------------------------VSSSTGATSVTTHDYGVV 315 A+ + +Y T + T T+ GV Sbjct: 591 ATVEVIREFIYPTEFDPPQIPQSVGATTTTGGVGLGSSTAAFPVTPTTPTAFEMRPVGVR 650 Query: 316 LHFTPTVLSPGR-IGLRIQTEVSE------------------------PVIGVNAGDMPS 350 + P + G I L + EV+E + N + P Sbjct: 651 MEVDPVIGPDGYTIDLNLAPEVTEFEGFINYGSPINTASTDALGNPTTVTLTENRIEQPV 710 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + RK T V + G T+ + GL+++D+Q +++ +P+L IPILG LF++ + + + Sbjct: 711 FSTRKVTTAVTVWDGQTVAMGGLIREDVQDVEDKVPILGDIPILGRLFQSKAEDHFKRNL 770 Query: 411 FIAATPFLVKPV 422 I T L+ P Sbjct: 771 MIFVTAKLIDPS 782 >gi|313143572|ref|ZP_07805765.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128603|gb|EFR46220.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 605 Score = 153 bits (386), Expect = 8e-35, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 119/300 (39%), Gaps = 25/300 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGK 237 + + LN + QV + V I ++ + G + P + ++ Sbjct: 250 ESYLATLNNKIQKQVLIDVYIFNIQHSNNQTYGIDWNEFYKLGNLLTLPPNAEGSNNALT 309 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 V+ GDF++ S ++ L+ +++++ P + ++ Q A + G Y Sbjct: 310 GVNN-GDFAISIFSQGVSINRIVEFLQTYGKVQSVSNPKVLTLNNQPAIISVGSVLRYFQ 368 Query: 296 --------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT------EVSEPVI 341 + S + + + G++L TP+V +I L+I ++S Sbjct: 369 NTTYQTTTQGTSIQNLSQTFPSVFAGILLDVTPSV-KNDKIILKINPSITKTKDISIENQ 427 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 P+ ++ + V++ G IVL GL+ Q+ +P+L IP++ LF Sbjct: 428 TTALESPPNLSTKQLSSLVQVKDGEKIVLGGLIDKTEGQILRKLPILGDIPLIKYLFSYK 487 Query: 402 RFNREETEIFIAATPFLVKPVAM---RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 + +E E+ I +P +V+ A +D +++ E D K K P++++ Sbjct: 488 KNIKETQEMVIIISPHIVRLDAREQEQDKIEEIINFTKESDLKPQDSKDTTKDSAPQDST 547 >gi|16082740|ref|NP_395186.1| outer membrane secretin precursor [Yersinia pestis CO92] gi|31795269|ref|NP_857730.1| outer membrane secretin precursor [Yersinia pestis KIM] gi|31795473|ref|NP_857925.1| outer membrane secretin precursor [Yersinia pestis KIM] gi|45478532|ref|NP_995359.1| putative type III secretion protein YscC [Yersinia pestis biovar Microtus str. 91001] gi|108793654|ref|YP_636804.1| type III secretion protein [Yersinia pestis Antiqua] gi|145597132|ref|YP_001154596.1| type III secretion protein [Yersinia pestis Pestoides F] gi|149192687|ref|YP_001293919.1| Type III secretion outer membrane pore protein [Yersinia pestis CA88-4125] gi|165927821|ref|ZP_02223653.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. F1991016] gi|165940102|ref|ZP_02228636.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. IP275] gi|166011759|ref|ZP_02232657.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. E1979001] gi|166214450|ref|ZP_02240485.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. B42003004] gi|167401969|ref|ZP_02307455.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422893|ref|ZP_02314646.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426864|ref|ZP_02318617.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229896868|ref|ZP_04512028.1| Type III secretion outer membrane pore protein [Yersinia pestis Pestoides A] gi|229900223|ref|ZP_04515359.1| Type III secretion outer membrane pore protein [Yersinia pestis biovar Orientalis str. India 195] gi|270491097|ref|ZP_06208169.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis KIM D27] gi|322836578|ref|YP_004210074.1| type III secretion outer membrane pore YscC [Yersinia pestis Java 9] gi|155446|gb|AAA27638.1| KIM5 [Yersinia pestis] gi|2996229|gb|AAC62552.1| Yop proteins translocation protein C homolog [Yersinia pestis KIM 10] gi|3822061|gb|AAC69781.1| type III secretion protein [Yersinia pestis KIM 10] gi|5832472|emb|CAB54929.1| putative type III secretion protein [Yersinia pestis CO92] gi|45357154|gb|AAS58550.1| putative type III secretion protein YscC [Yersinia pestis biovar Microtus str. 91001] gi|108782201|gb|ABG16256.1| type III secretion protein [Yersinia pestis Antiqua] gi|145212900|gb|ABP42306.1| type III secretion protein [Yersinia pestis Pestoides F] gi|148872345|gb|ABR14835.1| Type III secretion outer membrane pore protein [Yersinia pestis CA88-4125] gi|165912012|gb|EDR30655.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. IP275] gi|165920257|gb|EDR37558.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. F1991016] gi|165989366|gb|EDR41667.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. E1979001] gi|166204343|gb|EDR48823.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. B42003004] gi|166958183|gb|EDR55204.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048697|gb|EDR60105.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054163|gb|EDR63990.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229686743|gb|EEO78823.1| Type III secretion outer membrane pore protein [Yersinia pestis biovar Orientalis str. India 195] gi|229700139|gb|EEO88178.1| Type III secretion outer membrane pore protein [Yersinia pestis Pestoides A] gi|262364013|gb|ACY64350.1| outer membrane secretin precursor [Yersinia pestis D182038] gi|270334840|gb|EFA45619.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis KIM D27] gi|317374471|gb|ADV16646.1| type III secretion outermembrane pore forming protein [Yersinia pestis] gi|321161352|gb|ADW67058.1| type III secretion outer membrane pore YscC [Yersinia pestis Java 9] Length = 607 Score = 153 bits (386), Expect = 8e-35, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 123/334 (36%), Gaps = 16/334 (4%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVE 162 + + D + + L+R ++D+ I+ V + + + + Q A Sbjct: 194 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIPQAATRASAQAKVEADP 251 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + + + +++++ L+ + + ++I ++ D L ++G + G Sbjct: 252 SLNAIIVRDSPERM--PMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 307 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279 +G + G + + ++ ++D + ++ LE + + ++ PTL Sbjct: 308 RTGNNHQVVIKTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLT 367 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336 A Y + + YG +L TP VL+ G I L + E Sbjct: 368 QENAQAVID--HHETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIED 425 Query: 337 SEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + D +P+ DT + G ++++ G+ +D++ +PLL IP LG Sbjct: 426 GNQKPNSSGIDGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLG 485 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ALFR T P ++ L+ Sbjct: 486 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 519 >gi|224437102|ref|ZP_03658083.1| hypothetical protein HcinC1_04000 [Helicobacter cinaedi CCUG 18818] Length = 602 Score = 153 bits (386), Expect = 8e-35, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 119/300 (39%), Gaps = 25/300 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGK 237 + + LN + QV + V I ++ + G + P + ++ Sbjct: 247 ESYLATLNNKIQKQVLIDVYIFNIQHSNNQTYGIDWNEFYKLGNLLTLPPNAEGSNNALT 306 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 V+ GDF++ S ++ L+ +++++ P + ++ Q A + G Y Sbjct: 307 GVNN-GDFAISIFSQGVSINRIVEFLQTYGKVQSVSNPKVLTLNNQPAIISVGSVLRYFQ 365 Query: 296 --------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT------EVSEPVI 341 + S + + + G++L TP+V +I L+I ++S Sbjct: 366 NTTYQTTTQGTSIQNLSQTFPSVFAGILLDVTPSV-KNDKIILKINPSITKTKDISIENQ 424 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 P+ ++ + V++ G IVL GL+ Q+ +P+L IP++ LF Sbjct: 425 TTALESPPNLSTKQLSSLVQVKDGEKIVLGGLIDKTEGQILRKLPILGDIPLIKYLFSYK 484 Query: 402 RFNREETEIFIAATPFLVKPVAM---RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 + +E E+ I +P +V+ A +D +++ E D K K P++++ Sbjct: 485 KNIKETQEMVIIISPHIVRLDAREQEQDKIEEIINFTKESDLKPQDSKDTTKDSAPQDST 544 >gi|312114563|ref|YP_004012159.1| type II and III secretion system protein [Rhodomicrobium vannielii ATCC 17100] gi|311219692|gb|ADP71060.1| type II and III secretion system protein [Rhodomicrobium vannielii ATCC 17100] Length = 636 Score = 153 bits (386), Expect = 8e-35, Method: Composition-based stats. Identities = 65/285 (22%), Positives = 110/285 (38%), Gaps = 19/285 (6%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 N ++ L+V I E+ R +Q+G + + + P SF G ++ + Sbjct: 334 TNDRKPAEIMLEVEILEIDRTKAEQLGLDYGSSITVQLPQVSFTDLANGAKLATNSVITF 393 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGAT 305 V + L+ RTL+ P + + GQ A G + ++ V +TG T Sbjct: 394 PTV--------TFNYLKTDVGARTLSNPRIRTVDGQPAKIHVGDRVPLQSSFVQDTTGQT 445 Query: 306 SV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVE 361 HD G+ L P G I + ++ EVS + P+ R TT+ Sbjct: 446 RTLFEYHDIGIQLDVIPKYHLDGSIFVDLKIEVSSLGSNLGTAAQPAYAIGSRNVHTTMI 505 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLL-SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L T +L GL+K++ Q G+P+ S + +L LF S +E+ + TP L++ Sbjct: 506 LRENETALLGGLIKEEEQHNMNGLPVERSGVSVLDRLFSTSSDKVGRSELLLTITPRLIR 565 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465 P + S D + + + R Y K Y Sbjct: 566 PQSFAQRSATDFY----SGTEGTYSIRAEHEYLKKAPESGLAPRY 606 >gi|15618612|ref|NP_224898.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydophila pneumoniae CWL029] gi|15836234|ref|NP_300758.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138] gi|16752338|ref|NP_444596.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39] gi|33242060|ref|NP_877001.1| outer membrane secretion protein Q [Chlamydophila pneumoniae TW-183] gi|4377005|gb|AAD18841.1| probable Yop proteins translocation protein C/general secretion pathway protein [Chlamydophila pneumoniae CWL029] gi|6672030|dbj|BAA88652.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae] gi|7188983|gb|AAF37937.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39] gi|8979074|dbj|BAA98909.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138] gi|33236570|gb|AAP98658.1| outer membrane secretion protein Q [Chlamydophila pneumoniae TW-183] Length = 919 Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 65/329 (19%), Positives = 120/329 (36%), Gaps = 57/329 (17%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------SITGSSSGPSK 228 ++N L++ QV ++V I + + G Q + ++ + Sbjct: 583 GLLNGLDLP-PKQVYIEVLILDTSLEKSWDFGVQWVALGDEQSKVAYASGLLNNTGIATP 641 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFS---------------------------FETVLH 261 + A G G L FS +L Sbjct: 642 TKATVPPGTPNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGNVLSHKGKSFLTLGGLLS 701 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVL 316 AL++ + P + A Q ASF G Y+T ++ T ++ D GV L Sbjct: 702 ALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQETGTVTQNIDYEDIGVNL 761 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 T TV + L+I+ +SE + + P A T +++P G +V++G ++D Sbjct: 762 VVTSTVAPNNVVTLQIEQTISE-LHSASGSLTPVTDKTYAATRLQIPDGCFLVMSGHIRD 820 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHY 434 ++ G+PLL+ IP++ LF + R++ I + P ++ R ++ Y Sbjct: 821 KTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTRVTNKEGYRY 880 Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 + E D + P+ A E +G Sbjct: 881 NWEADEGSM-------QVAPRHAPECQGP 902 >gi|260770882|ref|ZP_05879811.1| type IV pilus biogenesis protein PilQ [Vibrio furnissii CIP 102972] gi|260614119|gb|EEX39309.1| type IV pilus biogenesis protein PilQ [Vibrio furnissii CIP 102972] Length = 574 Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 33/269 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFV 239 + ++ L+I QV ++ I V L ++G + S T S+ S ++ G + Sbjct: 306 RDIVASLDIP-VKQVQIEARIVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGL 364 Query: 240 SEGGD---------------------------FSVKGVLDRFSFETVLHALERATAIRTL 272 +G F V + + L A++R + + Sbjct: 365 YDGSSDSGDGAAIDDFLNVNLAATSANASSIAFQVAKLGADTLLDLELSAMQRESKAEII 424 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + P L + Q A G + Y SSS+GATSV + L TP + R+ L + Sbjct: 425 SSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDL 483 Query: 333 QTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 P V+ G+ + ++ T V + +G T+VL G+ + + + +PLL Sbjct: 484 SVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGD 543 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 +P+LGALFR S ++E+ I TP +V Sbjct: 544 LPLLGALFRRSYEQMGKSELLIFVTPKVV 572 >gi|281358092|ref|ZP_06244576.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281315465|gb|EFA99494.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 545 Score = 152 bits (385), Expect = 9e-35, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 98/255 (38%), Gaps = 11/255 (4%) Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG- 235 A + + +M +++ Q+ ++ I EV Q S G + G Sbjct: 144 AVENYRSIMLAMDVPSS-QILIEAKIVEVMFSDGMQRNLSISYAHKGRGSIGATTEVPGQ 202 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + G + K + + + + L A + L+ P + + + +G + Sbjct: 203 SSQPTTGMGGNWKPIAGKDTLDIAFQWLLTAQDAKVLSSPNILISRNEVSRIVTGEEIPI 262 Query: 296 KTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------GVNAG 346 + +S+ S GV L P++++ + LR+ +VS + G + Sbjct: 263 QEANSTGNTLSLSTKFKSVGVTLEVEPSMINRDNVTLRVYPKVSNVIRYENVSAGGDTSY 322 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P R +T + + +++ GL + ++ +P+LS +P++G LF +E Sbjct: 323 PVPVISARSVETYLRMQDKQVVMMGGLYSRNDSLSQQRVPILSDLPLIGELFTGKNLTKE 382 Query: 407 ETEIFIAATPFLVKP 421 T++ ++ P Sbjct: 383 VTQLIFFLKIHIISP 397 >gi|51593921|ref|YP_068488.1| yscC; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] gi|51591618|emb|CAF25422.1| yscC; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] Length = 607 Score = 152 bits (385), Expect = 9e-35, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 123/334 (36%), Gaps = 16/334 (4%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVE 162 + + D + + L+R ++D+ I+ V + + + + Q A Sbjct: 194 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIPQAATRASAQAKVEADP 251 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + + + +++++ L+ + + ++I ++ D L ++G + G Sbjct: 252 SLNAIIVRDSPERM--PMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 307 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279 +G + G + + ++ ++D + ++ LE + + ++ PTL Sbjct: 308 RTGNNHQVVIKTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLT 367 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336 A Y + + YG +L TP VL+ G I L + E Sbjct: 368 QENAQAVID--HHETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIED 425 Query: 337 SEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + D +P+ DT + G ++++ G+ +D++ +PLL IP LG Sbjct: 426 GNQKPNSSGIDGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLG 485 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ALFR T P ++ L+ Sbjct: 486 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 519 >gi|32471402|ref|NP_864395.1| protein transporter [Rhodopirellula baltica SH 1] gi|32443243|emb|CAD72074.1| conserved hypothetical protein-putative protein transporter [Rhodopirellula baltica SH 1] Length = 521 Score = 152 bits (385), Expect = 9e-35, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 88/241 (36%), Gaps = 12/241 (4%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L+ I V D Q G G + + G E + + Sbjct: 272 PQVVLEAIICVVSPDSGFQFGLDWQHAVEMDGVKELSLSASGLALNGELSQAGLDAIFSD 331 Query: 254 F-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTH- 310 F + + L + A P + A G+ A+ + + STG SV Sbjct: 332 FGNTSAFVRLLSEKGYLTIRATPHVMAKDGEQANIAINRETFFSVQPPGSTGNNSVFFQQ 391 Query: 311 -----DYGVVLHFTPTVLSP----GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 D G++L TP + + +V ++ P R TTV Sbjct: 392 NIQKVDAGIMLDITPHIRGDEVTIDIEKAEVSEDVRNATPALSINQYPIINRRSVSTTVS 451 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G TIV+ GL++ + IP LS++P +G LF+ ++ + E+ I +P +V+ Sbjct: 452 VKDGKTIVIGGLVQRETVDRVNRIPGLSRLPGVGYLFQTTQRQTRDAEVVIFISPRIVRS 511 Query: 422 V 422 Sbjct: 512 T 512 >gi|218961675|ref|YP_001741450.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167730332|emb|CAO81244.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 472 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 32/259 (12%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSKSFAADFGGK 237 + Q+ ++V + EV + KQIG S + +G +++ G Sbjct: 188 TQQQQIEIRVRLIEVHLNEAKQIGVDWSKLNHLTTILAEDPVNQYGTGLPYNYSDATGYL 247 Query: 238 FVSEGGDFSVKGVLDRFS-----------------FETVLHALERATAIRTLAEPTLTAI 280 + DF V F F+ + L A + L + +TA+ Sbjct: 248 PHGDPTDFGVIPDEQYFQRINGFHDIGHFSRQLTAFDVTIDWLLENNAAQLLTDTRVTAL 307 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 +G+ A+ G + V+ V + G++L+ TP V G I + I EVS Sbjct: 308 NGELATMHIGEVVPF-VVTDKENQLQVERSETGIILNVTPKVNKDGNITMNINPEVSSVT 366 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 V G +P +VR+ + V +P+ I++ GLL +I Q IPLL +P++G +F++ Sbjct: 367 ELV-GGYIPRTKVRRVSSAVTVPNEHKIIVGGLLNSNITQKINKIPLLGDLPLIGKIFQH 425 Query: 401 SRFNREETEIFIAATPFLV 419 E T++ I TP LV Sbjct: 426 RYELVENTDLIIEITPRLV 444 >gi|253998552|ref|YP_003050615.1| type II and III secretion system protein [Methylovorus sp. SIP3-4] gi|253985231|gb|ACT50088.1| type II and III secretion system protein [Methylovorus sp. SIP3-4] Length = 650 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 70/345 (20%), Positives = 148/345 (42%), Gaps = 26/345 (7%) Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185 ++ + ++ ++ +T+V+ I+ +++ + + + +++ + Sbjct: 293 MIKTVVKTKDVYIDEKLNTLVMRDTPEAIRTAEKLITSQDMAEPEVVLEVEVLEINRRSL 352 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 + I V++ V RD ++ G+++ F S+ G F Sbjct: 353 EAIGIRYPSAVSVGVQ----GRD---------TVNGTTTLTPGELTVRELKNFNSDLGVF 399 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTG- 303 S+ + L+ L++ T LA P + + + A G + T +++STG Sbjct: 400 SISDPV------LALNLLQQDTDTNLLANPRIRVKNREKAKIHVGDRIPVLTSIANSTGF 453 Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTT 359 + SV+ + G+ L PT+L + +++ EVS + + + R A+T Sbjct: 454 VSQSVSYIEVGIKLDVEPTILLNDDVSIKVGLEVSNQTDKITSSSGTVTYTIGTRNANTI 513 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L +G T VLAGLL+DD Q++ +P L+K+P++G LF + +R + EI + TP +V Sbjct: 514 LRLKNGETQVLAGLLRDDEQKISNRVPGLAKLPLIGKLFTDRSTDRTKKEIALLITPRIV 573 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNR-VNKIYGPKEASEVEGQ 463 + + V+ + + R VN+ +A + Q Sbjct: 574 SNITPAEALYTAFPAGVDRNTGSNRNGRQVNESPAIAQAPLIPQQ 618 >gi|186897497|ref|YP_001874608.1| YscC/HrcC family type III secretion outer membrane protein [Yersinia pseudotuberculosis PB1/+] gi|186700523|gb|ACC91151.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pseudotuberculosis PB1/+] Length = 607 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 123/334 (36%), Gaps = 16/334 (4%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVE 162 + + D + + L+R ++D+ I+ V + + + + Q A Sbjct: 194 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIPQAATRASAQAKVEADP 251 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + + + +++++ L+ + + ++I ++ D L ++G + G Sbjct: 252 SLNAIIVRDSPERM--PMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 307 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279 +G + G + + ++ ++D + ++ LE + + ++ PTL Sbjct: 308 RTGNNHQVVIKTTGDKSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLT 367 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336 A Y + + YG +L TP VL+ G I L + E Sbjct: 368 QENAQAVID--HHETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIED 425 Query: 337 SEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + D +P+ DT + G ++++ G+ +D++ +PLL IP LG Sbjct: 426 GNQKPNSSGIDGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLG 485 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ALFR T P ++ L+ Sbjct: 486 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 519 >gi|11991134|gb|AAG42220.1| unknown [Shewanella putrefaciens 200] Length = 258 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 7/172 (4%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----SVTT 309 F ++ A+ T LA P +T + Q ASF G + T S+++ +V Sbjct: 9 DFGALIQAVSSDTNSNVLATPXITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVER 68 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + GV L P + + L I+ EVS + N G S+ R+ TTV SG +V Sbjct: 69 KEVGVKLKVVPQINEGNAVKLAIEQEVSG--VNGNTGVDISFATRRLTTTVMADSGQIVV 126 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L GL+ + +Q+ + + L IP+LG L + + + I P +++ Sbjct: 127 LGGLINEXVQESVQKVLSLGDIPVLGHLSNLPPVXKTKKNLMIFIKPTIIRD 178 >gi|301166568|emb|CBW26144.1| putative general secretion pathway protein D [Bacteriovorax marinus SJ] Length = 765 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 70/338 (20%), Positives = 122/338 (36%), Gaps = 52/338 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVS 240 K+V+ L+ DQV ++ I E K G GS + F + F Sbjct: 399 KEVIKKLDRP-RDQVFVEGMIMETSVTKDKGFGINIIGAYGSGATDKAGFVGNGTDLFNV 457 Query: 241 EGGDFSVKGVLDRF-------------------SFETVLHALERATAIRTLAEPTLTAIS 281 + + G L S ++ A+ LA P + A+ Sbjct: 458 MSNNITALGGLFVGGGTGSSVTQTVSGQEVKIKSVSGLITAIASNAGTNVLATPQIMALD 517 Query: 282 GQSASFTSGGQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEV- 336 + A F G ++ + + S+ + L TP V R I L+I ++ Sbjct: 518 NEEAVFEVGESIPTPERTNAANGSSSVSIKQQKVAMTLKITPQVNKVTRFIKLKIDQKID 577 Query: 337 ---SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 S + D + R A T+V + TI + GL++D + +PLL IP+ Sbjct: 578 DFSSRSLPSGVQSDGVATTTRSAVTSVVVRDRDTIAMGGLMRDKETDVTSKVPLLGDIPV 637 Query: 394 LGALFRNSRFNREETEIFIAATPFLV-----------------KPVAMRDLSRPDDHYSV 436 LG LF+N+R + E+ + TP ++ + +++ D + Sbjct: 638 LGWLFKNTRKSVEKLNLLFFLTPKIIDVYKTANAVNVQDQLNRRSTHLKNALGEKDPF-- 695 Query: 437 EDDAKAFFFNRVNKIYGP----KEASEVEGQNYKGAIG 470 AK + + GP +EA E + +N + IG Sbjct: 696 ATTAKGLYEKAKKQEQGPLYDQEEADEYKRENEEQGIG 733 >gi|91224449|ref|ZP_01259711.1| putative type III secretion protein YscC [Vibrio alginolyticus 12G01] gi|91190791|gb|EAS77058.1| putative type III secretion protein YscC [Vibrio alginolyticus 12G01] Length = 624 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 112/320 (35%), Gaps = 25/320 (7%) Query: 120 IAHLEMTLRRFIADSNIRVEMV-------SDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 + + L+R ++ +V D V ++ Sbjct: 213 VPGIASVLKRVVSGVQTQVASASSKEVTSPDKPVKSNKTASVHGGATVEAEPGLNAIIVR 272 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---S 227 Q +K++ L+ + Q ++V +I ++ + L Q+G S Sbjct: 273 DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGVSVGNNRIVD 329 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284 D V+ G + K +LD + + LE + + ++ PTL Sbjct: 330 IKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVE 389 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339 A + K V T A + YG +L P ++ I L + E Sbjct: 390 AVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPEINLSLHLEDGAK 447 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + D+PS R + T + G ++++ G+ +D++ +PLL IP LGALFR Sbjct: 448 IADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 507 Query: 400 NSRFNREETEIFIAATPFLV 419 ++ + T P +V Sbjct: 508 SNTNTKRRTVRMFILEPRIV 527 >gi|148547514|ref|YP_001267616.1| type II and III secretion system protein [Pseudomonas putida F1] gi|148511572|gb|ABQ78432.1| type II and III secretion system protein [Pseudomonas putida F1] Length = 621 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 140/376 (37%), Gaps = 39/376 (10%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + D + + I + +E + + + +R ++V+D V+ + Q ++ Sbjct: 212 FIFDKDLRPDMKATIFVRE--VRIEDAIALLLEQNQLRQKIVNDNTVMV-YPDSPQKTKD 268 Query: 160 AVELSET--FLSQSGRNQYANSSSK-------KVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 EL +L+ N N V LN + V +AE Sbjct: 269 YQELVMRTFYLTSIDANTALNMVKTMLKTRDVFVDERLNTLTMRDTSDAVRMAEKLLQSQ 328 Query: 211 KQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVLDRFSFE------ 257 Q + + + S D G G +G SV L S Sbjct: 329 DQSNPEVVLEVEVMEVATSRILDLGLQWPNTFGVLSDDGNPVSVLDQLKGISSSRISIAP 388 Query: 258 ---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT 308 ++A + I TLA P + + + A G + + +S SVT Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS-YRVRKADTTVELPSG 365 D G+ L PTV + +++ EVS P+ G +P R A T++ L G Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ + + Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLPYQ 566 Query: 426 DLSRPDDHYSVEDDAK 441 S + E + Sbjct: 567 SPSDMEFSTGTESAMQ 582 >gi|269967259|ref|ZP_06181323.1| putative type III secretion protein YscC [Vibrio alginolyticus 40B] gi|269828115|gb|EEZ82385.1| putative type III secretion protein YscC [Vibrio alginolyticus 40B] Length = 624 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 112/320 (35%), Gaps = 25/320 (7%) Query: 120 IAHLEMTLRRFIADSNIRVEMV-------SDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 + + L+R ++ +V D V ++ Sbjct: 213 VPGIASVLKRVVSGVQTQVASASSKEVTSPDKPVKSNKTASVHGGATVEAEPGLNAIIVR 272 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---S 227 Q +K++ L+ + Q ++V +I ++ + L Q+G S Sbjct: 273 DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGVSVGNNRIVD 329 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284 D V+ G + K +LD + + LE + + ++ PTL Sbjct: 330 IKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVE 389 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339 A + K V T A + YG +L P ++ I L + E Sbjct: 390 AVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPEINLSLHLEDGAK 447 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + D+PS R + T + G ++++ G+ +D++ +PLL IP LGALFR Sbjct: 448 IADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 507 Query: 400 NSRFNREETEIFIAATPFLV 419 ++ + T P +V Sbjct: 508 SNTNTKRRTVRMFILEPRIV 527 >gi|270157060|ref|ZP_06185717.1| type II secretory pathway protein LspD [Legionella longbeachae D-4968] gi|289164527|ref|YP_003454665.1| type II protein secretion LspD [Legionella longbeachae NSW150] gi|269989085|gb|EEZ95339.1| type II secretory pathway protein LspD [Legionella longbeachae D-4968] gi|288857700|emb|CBJ11543.1| type II protein secretion LspD [Legionella longbeachae NSW150] Length = 786 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 101/250 (40%), Gaps = 23/250 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+V+ L+I Q+ ++ +AE+ +D + +G + + P Sbjct: 489 KRVIGQLDIK-PAQLLIEALVAEINQDDVNDLGIEWGSNQQTGKPGG-----------FR 536 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + F+ ++AL RA L+ P++ + + A G Q + + Sbjct: 537 NGFAIINSKTQIADFQAQIYALARAHKANILSTPSVVVLDNRQAKILVGKQVSVASTNYP 596 Query: 302 TGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPS 350 A T+ + + L+ P + I ++I +P A P+ Sbjct: 597 NNAGGTTPASPYTTFDRVNVALHLYVRPQITRGNGIQMQIDQGNDTLDPPATAEASVNPT 656 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R+ T+V + SG +VL GL +D + +P+L +P +G LF+ + RE+ + Sbjct: 657 FRISSIVTSVHVESGDIVVLGGLTQDRLDNDNNRLPVLGDLPGVGRLFKRNINTREKRVL 716 Query: 411 FIAATPFLVK 420 + P +++ Sbjct: 717 MVFIKPIILR 726 >gi|260654164|ref|ZP_05859654.1| putative bacterial type II/III secretion system short domain protein [Jonquetella anthropi E3_33 E1] gi|260631149|gb|EEX49343.1| putative bacterial type II/III secretion system short domain protein [Jonquetella anthropi E3_33 E1] Length = 531 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 83/428 (19%), Positives = 159/428 (37%), Gaps = 59/428 (13%) Query: 19 SNPSVAKLPPIKEANAA-VINISDVEIGKGKKISI-GLNKVIILQVPVDVQDVLVSDPTK 76 PS P + +++++V++ +++ GL II+ P V +S Sbjct: 133 GAPSAGCAKPAGQKEKRLTMSLTEVKVADALRLAAEGLKCSIIVDEPETSPTVTLS---L 189 Query: 77 ADVVVHSPRTMYL----FG-KNVGQA------NVIL--IGHDGKQMLNLDI--LIERDIA 121 DV + +G +G +V+ +G +G + + D+ Sbjct: 190 RDVTAQEALELITASAGYGWAKIGSTILVGPRSVLAARLGKNG--LKSYDVFWADPGKTG 247 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L ++ + D + V+ + + + G + + + + Sbjct: 248 ALVKSIVGLVGDDAVSVDERRNRIYVKGTPAQQEQVRELLAQLDE--------------- 292 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRD-------ILKQIGFQHSITGSSSGPSKSFAADF 234 DQV +K I EV D +L+ + Q ++ SS S F D Sbjct: 293 ----------PADQVMIKARIIEVNDDATSEMESVLQAVYHQWWLSFSSGVASLGFF-DS 341 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G G + R + + L R LA+PT+ + G A+ + Sbjct: 342 SSPLAPSSGTAQGAGTVARM-LDARIAGLVEKGKARVLADPTVVVLDGHKATIKLVDRVK 400 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSY 351 Y + G + + G L TP V S G + + + + E V G D+P Sbjct: 401 YVSWRDDAGNPGYSDEEVGPRLEVTPRVGSEGGMTISMALKTGEIVQWKRGGLGEDVPQI 460 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ ++V + G V+ GL K+ + + + IP+L +P+LG+LFR+SR +++ Sbjct: 461 SEREVSSSVRVLDGQPFVVGGLFKESVSKTTQRIPVLGDLPLLGSLFRSSRRRSVRSQVV 520 Query: 412 IAATPFLV 419 + P L+ Sbjct: 521 MVVIPTLL 528 >gi|319786555|ref|YP_004146030.1| general secretion pathway protein D [Pseudoxanthomonas suwonensis 11-1] gi|317465067|gb|ADV26799.1| general secretion pathway protein D [Pseudoxanthomonas suwonensis 11-1] Length = 711 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 108/283 (38%), Gaps = 44/283 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAADFGGKF 238 ++V+ L++ +QV ++ + E+ D +++G Q + G F G Sbjct: 357 QEVIRQLDVR-REQVLVEALVVEISDDAARKLGTQLLLAGKDGTVPAGMTQFGNAGPGMA 415 Query: 239 VSEGGDFSVKGVLDRFS----------------------------------FETVLHALE 264 GG + +G F +++A+ Sbjct: 416 ALAGGVLASRGRGGDDDDDGAADAIREAAAQSLLGLSGGLLGIGGQSKDRLFGIIINAVR 475 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFT 319 L+ P++ + + A G + T +++ ++ D GV L Sbjct: 476 SDARSNVLSTPSILTLDNEEAHILVGEEVPVTTGEVLSNNNNNPFRTIDRQDVGVRLTVR 535 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 P + S G I L I+ EVS V+ + D R+ +T V + G I L GLL Sbjct: 536 PQINSGGGITLAIRQEVSSVSGTVSRSSDELVLNKREIETNVVVDDGAMIALGGLLDHTS 595 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 ++ +PLL IP+LGALFR++ + T + + P +++ Sbjct: 596 SDRRDKVPLLGDIPVLGALFRSTSRSSTRTNLMVFLRPTVIRD 638 >gi|313498582|gb|ADR59948.1| Type II and III secretion system protein [Pseudomonas putida BIRD-1] Length = 621 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 138/376 (36%), Gaps = 39/376 (10%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + D + L I + +E + + + +R ++V+D L + Q ++ Sbjct: 212 FIFDKDLRPDLKATIFVRE--VRIEDAIALLLEQNQLRQKIVNDN-TLMVYPDSPQKTKD 268 Query: 160 AVELSET--FLSQSGRNQYANSSSK-------KVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 EL +L+ N N V LN V +AE Sbjct: 269 YQELVMRTFYLTSIDANTALNMVKTMLKTRDVFVDERLNTLTMRDTPDAVRMAEKLLQSQ 328 Query: 211 KQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVLDRFSFE------ 257 Q + + + S D G G +G SV L + Sbjct: 329 DQSNPEVVLEVEVMEVATSRILDLGLQWPNTFGVLSDDGNPVSVLDQLKGINSSRISIAP 388 Query: 258 ---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT 308 ++A + I TLA P + + + A G + + +S SVT Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS-YRVRKADTTVELPSG 365 D G+ L PTV + +++ EVS P+ G +P R A T++ L G Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ + + Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLPYQ 566 Query: 426 DLSRPDDHYSVEDDAK 441 S + E + Sbjct: 567 SPSDMEFSTGTESAMQ 582 >gi|257487974|ref|ZP_05642015.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 170 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 89/156 (57%), Gaps = 4/156 (2%) Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAG 346 G + V + + YGV L F+PT+L GRI L+++ EVS + VN Sbjct: 2 GGEVAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGY 61 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +PS+RVR+ADT VE+ SG T +AGL + + Q + +P+L +PILG LFR+ RF R Sbjct: 62 QVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRSKRFQRN 121 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 ETE+ I TP+LV+PV R ++ P D A A Sbjct: 122 ETELVILITPYLVEPVKDRVVATPLDKQRAASTASA 157 >gi|301064238|ref|ZP_07204681.1| type IV pilus secretin PilQ [delta proteobacterium NaphS2] gi|300441683|gb|EFK06005.1| type IV pilus secretin PilQ [delta proteobacterium NaphS2] Length = 756 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 99/269 (36%), Gaps = 32/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-----------------S 224 K+++ L++ E QV ++ I E D + +G Q S Sbjct: 489 KELVRKLDVP-EKQVMIETRIVEATTDFARDLGIQWQSLDGSRPGVQRKWYNSDGTERFD 547 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G + A G + + G L + + L + + ++ P + ++ Sbjct: 548 GSFSTNAPANWGANIGLAFGWITDGGLGSLALDASLALAQDDGKAKIISAPKVMTVNNGP 607 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHD--YGVVLHFTPTVLSPG-RIGLRIQTEVSEPVI 341 A G + + ++ + + L TPTV + + ++++ + + Sbjct: 608 AEVARGTVRYFPIRTLD----TIDYKEIPALLSLTVTPTVSADDQHVTMKVEVTDNRELP 663 Query: 342 GVN-------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 P +K + + + +G T+V+ G+ + GIP L IP+L Sbjct: 664 ASTEQTEEGTTDSPPGRTEKKITSNLIVKTGDTVVIGGIYQKSEISSDSGIPWLKDIPLL 723 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVA 423 G LF+ R +TE+ I TP +VK V Sbjct: 724 GYLFKAERTQESKTELLIFLTPTVVKSVV 752 >gi|62184688|ref|YP_219473.1| putative general secretion protein [Chlamydophila abortus S26/3] gi|62147755|emb|CAH63499.1| putative general secretion protein [Chlamydophila abortus S26/3] Length = 908 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 64/332 (19%), Positives = 118/332 (35%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 ++ KV++LLN QV ++V I E + G Q G G + Sbjct: 564 QTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLS 623 Query: 236 GKFVSEGGDFSVK--------------------------------GVLDR---------F 254 ++ +V G++ Sbjct: 624 NTGLANPAKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFL 683 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309 + +L AL++ + P + A Q ASF G ++T S+ T ++ Sbjct: 684 TLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEY 743 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T+ + L+I+ +SE + P A T +++P G +V Sbjct: 744 EDIGVNLVVASTIAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLV 802 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D ++ G+PLL+ IP+L LF + R++ I + P ++ Sbjct: 803 MSGHIRDKTTKIVTGVPLLNSIPLLRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTKLT 862 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +A N + P+ A E + Sbjct: 863 NKEGYRYNWEA-----NEGSMQVAPRHAPECQ 889 >gi|117926538|ref|YP_867155.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1] gi|117610294|gb|ABK45749.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1] Length = 830 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 125/330 (37%), Gaps = 47/330 (14%) Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L V G+V Q++ + + T Y S + Sbjct: 252 LPSAAPGGTASPAKAEPKVTSSGVVSINQETG-VISIFATAADHERIGSYLESLMEN--- 307 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-- 244 QV ++ T+ EV Q G + + + G S+ A F GG Sbjct: 308 -----AHRQVLIESTVVEVTLSDDHQQGVDWA-SINDDGLSRLSAPFFANSIGVNGGSRP 361 Query: 245 --------FSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 FS+ ++ + + AL + + L+ P + A++ Q+A + Sbjct: 362 MALSDLPVFSLPTSINSGFGKITSTVRALAKFGNTKVLSSPKIMALNNQTAVLKVVDNTV 421 Query: 295 YKTVSSSTGA---------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + TV + G+ T V T G+V+ TP + + + L ++ +S Sbjct: 422 FFTVEAEAGSSANASGGTDTTALINTRVHTVPVGLVMSVTPQISADDVVTLNVRPTISSV 481 Query: 340 VIGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 V+ + +P +V++ ++ + + SG V+ GL++D I ++ G+PL+S Sbjct: 482 SRWVSDPNPHLNAGVENLIPEIQVKEMESILRVHSGQITVMGGLMQDKISKVDTGLPLIS 541 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 ++P +G LF +TE+ I P ++ Sbjct: 542 QVPGIGGLFGYKEKTVSKTELVIFMRPVVM 571 >gi|315178926|gb|ADT85840.1| fimbrial assembly protein [Vibrio furnissii NCTC 11218] Length = 557 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 33/269 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFV 239 + ++ L+I QV ++ I V L ++G + S T S+ S ++ G + Sbjct: 289 RDIVASLDIP-VKQVQIEARIVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGL 347 Query: 240 SEGGD---------------------------FSVKGVLDRFSFETVLHALERATAIRTL 272 +G F V + + L A++R + + Sbjct: 348 YDGSSDSGDGAAIDDFLNVNLAATSANASSIAFQVAKLGADTLLDLELSAMQRESKAEII 407 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + P L + Q A G + Y SSS+GATSV + L TP + R+ L + Sbjct: 408 SSPRLITTNKQPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDL 466 Query: 333 QTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 P V+ G+ + ++ T V + +G T+VL G+ + + + +PLL Sbjct: 467 SVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGD 526 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 +P+LGALFR S ++E+ I TP +V Sbjct: 527 LPLLGALFRRSYEQMGKSELLIFVTPKVV 555 >gi|116626816|ref|YP_828972.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116229978|gb|ABJ88687.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 752 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 97/250 (38%), Gaps = 17/250 (6%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 ++ L+IA QV + I EV + G + +GP F+ + G Sbjct: 480 GLLRQLDIA-PRQVLIDAKIYEVDLNGAFAAGVSAYLDKKDTGP---FSRTLNAATGAGG 535 Query: 243 GDFSVKG-VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + VL L A E A+ + ++ P++ A A+ G T + Sbjct: 536 LTLTTGALVLRSHELLAALTASETASHSKVISAPSIIATDSVPATLNVGDDVPVLTSQAV 595 Query: 302 TG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMP 349 G +V+ GV L V S G + L + VS P +A P Sbjct: 596 AGGVQSSGSSVFTNTVSNRSTGVTLSIMARVNSSGIVTLIVNQNVSSPQPPPANSAIQSP 655 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 S+ R T + + G T+ + G++ + Q G+P L ++P +GA F + + TE Sbjct: 656 SFSNRSFQTQLTVQDGDTVAIGGIILESNLQSSAGVPFLHRLPGIGAAFGAKSYTKSRTE 715 Query: 410 IFIAATPFLV 419 + + TP ++ Sbjct: 716 LVVFLTPRVI 725 >gi|15596579|ref|NP_250073.1| type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|9947326|gb|AAG04771.1|AE004567_10 probable type II secretion system protein [Pseudomonas aeruginosa PAO1] Length = 759 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 103/254 (40%), Gaps = 23/254 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++VT+A V +++G + + S + S + + G Sbjct: 488 ARQVLIEVTVASVSLSDTQELGVEWEMLNGSFNSATSTGSKGSAGKGGFNYVINTAG--- 544 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------ 306 + A+ +R LA P + SG+ A+ G T + +T+ Sbjct: 545 --GNTAAIQAMADNQRVRVLATPRILVKSGEQANINVGRDIPIPTAQVNDDSTTAGSTNL 602 Query: 307 ---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYRVRK 355 + G +L+ P V S R+ L + E+S+ G P Sbjct: 603 RNEIAYRSTGTILNVAPVVYSDSRVDLTVSQELSDSGGSSGGGGKASGGGISAPEISRTS 662 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +T++ L SGG++++ GL++D+I G+PLL IP +G LF + + E+ + Sbjct: 663 LETSLTLKSGGSVLMGGLIRDNITDSNAGVPLLKDIPGIGFLFGRQKAVKTREEVIMLIQ 722 Query: 416 PFLVK-PVAMRDLS 428 P++++ R+++ Sbjct: 723 PYVLESDADAREVT 736 >gi|9630770|ref|NP_047372.1| putative maturation protein [Vibrio phage fs2] gi|3702216|dbj|BAA33484.1| unnamed protein product [Vibrio phage fs2] Length = 500 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 15/235 (6%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 +++ +++ + Q+ ++ I E ++G +G F V+ Sbjct: 214 LLSAIDVP-QRQIFIEAVITETELGDNSELGVNLQAAFDKAG--------FVTNLVNASK 264 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + + F ++ A+ ++ R L+ P + + + T G + +S+T Sbjct: 265 LKDNLFIFESGDFNALVKAISGSSDTRLLSRPNILIMDRERGYITVGQNVPFLVSNSTTD 324 Query: 304 ATS----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + D GV L TP V+ + L I E S A D+ + R TT Sbjct: 325 GGTSVQRIERKDVGVSLEVTPHVMGDD-VILVINQESSSVTDSTIAADIIT-NKRTLMTT 382 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 V + SG TIVL GL+ D+ + ++ G+P+L P++G LFR++ + E+ + Sbjct: 383 VAVKSGQTIVLGGLISDEKRNVESGVPVLKDTPLIGGLFRSTSTKNVQKELRVVI 437 >gi|310923243|emb|CBW54709.1| YscC, T3SS outer membrane ring component, local similarity to E.coli GspD (T2SS) and to iron transporters,PMID 9427408 [Yersinia enterocolitica (type O:8)] Length = 607 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 122/334 (36%), Gaps = 16/334 (4%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVE 162 + + D + + L+R ++D+ I+ V + + + + Q A Sbjct: 194 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIPQAATRASAQARVEADP 251 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + + + +++++ L+ + + ++I ++ D L ++G + G Sbjct: 252 SLNAIIVRDSPERM--PMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 307 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279 +G + G + + ++ ++D + ++ LE + + ++ PTL Sbjct: 308 RTGNNHQVVIKTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLT 367 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336 A + K T YG +L TP VL+ G I L + E Sbjct: 368 QENAQAVIDHSETYYVKVTGKEVAELKGIT--YGTMLRMTPRVLTQGDKSEISLNLHIED 425 Query: 337 SEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + +P+ DT + G ++++ G+ +D++ +PLL IP LG Sbjct: 426 GNQKPNSSGIEGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLG 485 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ALFR T P ++ L+ Sbjct: 486 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 519 >gi|329942358|ref|ZP_08291168.1| bacterial type II and III secretion system family protein [Chlamydophila psittaci Cal10] gi|332287000|ref|YP_004421901.1| bacterial type II/III secretion system protein [Chlamydophila psittaci 6BC] gi|325507136|gb|ADZ18774.1| bacterial type II/III secretion system protein [Chlamydophila psittaci 6BC] gi|328815268|gb|EGF85256.1| bacterial type II and III secretion system family protein [Chlamydophila psittaci Cal10] gi|328914230|gb|AEB55063.1| general secretion pathway protein D, putative [Chlamydophila psittaci 6BC] Length = 885 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 63/332 (18%), Positives = 117/332 (35%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 ++ KV++LLN QV ++V I E + G Q G G + Sbjct: 541 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLS 600 Query: 236 GKFVSEGGDFSVK--------------------------------GVLDR---------F 254 ++ +V G++ Sbjct: 601 NTGLANPTKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFL 660 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309 + +L AL++ + P + A Q ASF G ++T S+ T ++ Sbjct: 661 TLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEY 720 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L TV + L+I+ +SE + P A T +++P G +V Sbjct: 721 EDIGVNLVVASTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLV 779 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 780 MSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTKLT 839 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +A + P+ A E + Sbjct: 840 NKEGYRYNWEADE-----GSMQVAPRHAPECQ 866 >gi|262064162|gb|ACY07145.1| IV [Enterobacteria phage f1] Length = 426 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 108/268 (40%), Gaps = 18/268 (6%) Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 LS G N S+ K +++ L DQ+ ++ I E+++ + F + Sbjct: 164 LSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEIQQGDA--LDFSFAAGS 221 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + D +S G G+ + + AL+ + + L+ P + +S Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279 Query: 282 GQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 GQ S + G + T + + ++ + G+ + P ++ G I L I + Sbjct: 280 GQKGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITS 339 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 + A D+ + R TTV L G T++L GL +P LSKIP++ Sbjct: 340 KADSLSSSTQASDVIT-NQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSDVPFLSKIPLI 398 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPV 422 G LF + + EE+ +++ +V+ + Sbjct: 399 GLLFSSRSDSNEESTLYVLVKATIVRAL 426 >gi|89898772|ref|YP_515882.1| type III secretion general secretion pathway protein D [Chlamydophila felis Fe/C-56] gi|89332144|dbj|BAE81737.1| type III secretion general secretion pathway protein D [Chlamydophila felis Fe/C-56] Length = 908 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 62/332 (18%), Positives = 117/332 (35%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 ++ KV++LLN QV ++V I E + G Q G G + Sbjct: 564 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLS 623 Query: 236 GKFVSEGGDFSVK--------------------------------GVLDR---------F 254 +S ++ G++ Sbjct: 624 NTGISNPTKSTIPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFL 683 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309 + +L AL++ + P + A Q ASF G ++T S+ T ++ Sbjct: 684 TLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEY 743 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T+ + L+I+ +SE + P A T +++P G +V Sbjct: 744 EDIGVNLVVASTIAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLV 802 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 803 MSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTTLT 862 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +A + P+ A E + Sbjct: 863 NKEGYRYNWEADE-----GSMQVEPRHAPECQ 889 >gi|260772068|ref|ZP_05880985.1| type IV pilus biogenesis protein PilQ [Vibrio metschnikovii CIP 69.14] gi|260612935|gb|EEX38137.1| type IV pilus biogenesis protein PilQ [Vibrio metschnikovii CIP 69.14] Length = 573 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 109/266 (40%), Gaps = 30/266 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 +++++ L+I QV ++ I V L ++G + ++ + + Sbjct: 308 REIISALDIP-VKQVQIEARIVTVNEGNLDELGIRWGVSSTRGNNTVGGSIEGNLTGIGL 366 Query: 230 -------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + G + F V + + L A++R + ++ P Sbjct: 367 YQPEDGSEMINNFLNVNLGATAANASSIAFQVAKLGSGTLLDLELSAMQRESKAEIISSP 426 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 L + + A G + Y SSS+GAT+V + L TP + R+ L + Sbjct: 427 RLITTNKKPAYIEQGTEIPYLE-SSSSGATTVAFKKAVLSLQVTPQITPDNRLVLDLSVT 485 Query: 336 VSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 P ++ G+ + ++ T V + +G T+VL G+ + I + +PLL +P+ Sbjct: 486 QDRPGDIVKTGTGEAVAIHTQRIGTQVLVNNGETVVLGGIFQHSITNTVDKVPLLGDLPL 545 Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419 LGALFR S ++E+ I TP +V Sbjct: 546 LGALFRRSYQQMGKSELLIFVTPKVV 571 >gi|317050393|ref|YP_004111509.1| type II and III secretion system protein [Desulfurispirillum indicum S5] gi|316945477|gb|ADU64953.1| type II and III secretion system protein [Desulfurispirillum indicum S5] Length = 506 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 97/246 (39%), Gaps = 19/246 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LD 252 QV ++ I EV + +G + S+ GG F GGD + V Sbjct: 260 KQVLIEAQIFEVVLNDSHSLGIDWTNAFSAGSGVGIIGQATGGSFGLPGGDMATGVVQYT 319 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSV 307 R +F +L + A + L+ P + ++ Q+A +SG + T + Sbjct: 320 RNNFTGMLQVMRNAGNLEALSNPRIRVMNSQTAIISSGRITPFWTKRVDYSEVGGQINRI 379 Query: 308 TTHD-----YGVVLHFTPTVLSPGRIGLRI--------QTEVSEPVIGVNAGDMPSYRVR 354 T+D G+ + TP + G I L + + + G P ++ Sbjct: 380 ETYDRRDVLSGISMGVTPVIAPDGSILLTVIPVSTNFEEIDQQTDSSGDLIVSAPVVNMK 439 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +A T + + +V+ GL+ ++ + + LS IP+LG LFR SR +E E+ I Sbjct: 440 EAGTIIRVQDNDMVVIGGLISTSTRRETQEVSGLSAIPLLGHLFRGSRDVQERRELVIFL 499 Query: 415 TPFLVK 420 V+ Sbjct: 500 RIRSVE 505 >gi|196232588|ref|ZP_03131440.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] gi|196223350|gb|EDY17868.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] Length = 880 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 72/380 (18%), Positives = 131/380 (34%), Gaps = 110/380 (28%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + A+ + ++ Q +++ G QV ++ E+++ LK++ F Sbjct: 477 NASAIYIVKSSRLIVRNTQDQLDLVDTIISSGGGQGPVQVEIESKFVEIQQTNLKELSFD 536 Query: 217 H-------------SITGSSSG----------PSKSFAADFGGKFVSEGG---------- 243 + G +SG P + G ++ G Sbjct: 537 WLLGQFNAPATKNVFLGGGTSGTAPALNPSDFPFVNGGVPVGNNPLTAGNRSGNLAISAN 596 Query: 244 ------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 ++ GV F+ V+ AL + + L+ P +T SGQ A Sbjct: 597 AIDALLFPISGSSQVAPAIGAISGVFTDPQFQLVIRALNQKKGVDLLSSPKVTTKSGQRA 656 Query: 286 SFTSGGQHLYKT-----------------------------VSSSTGATSVTTHDYGVVL 316 + Y T + T T+ T + GV L Sbjct: 657 VIEIIREFRYPTEFTPPQIPQTFGNTGAGILGGGAATTGSFPVTPTTPTAFETRNTGVTL 716 Query: 317 HFTPTVLSPGR-IGLRIQTEV-------------------------SEPVIGVNAGDMPS 350 P + G I L + +V ++ VI N + P Sbjct: 717 EVEPVIGPDGYTIDLNLVPQVVEFEGFINYGSPITSSVTNPITGVSTQAVITPNVINQPI 776 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + RK T+V + G T+VL GL+++D+Q++++ +P++ IPI+G LFR+S + + Sbjct: 777 FSTRKVTTSVSVYDGSTVVLGGLIREDVQKVEDKVPIIGDIPIVGRLFRSSVDQHIKRNL 836 Query: 411 FIAATPFLV----KPVAMRD 426 I T L+ +PV D Sbjct: 837 IIFVTARLINAAGEPVRAED 856 >gi|313847597|emb|CBY16585.1| putative general secretion protein [Chlamydophila psittaci RD1] Length = 907 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 63/332 (18%), Positives = 117/332 (35%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 ++ KV++LLN QV ++V I E + G Q G G + Sbjct: 563 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLS 622 Query: 236 GKFVSEGGDFSVK--------------------------------GVLDR---------F 254 ++ +V G++ Sbjct: 623 NTGLANPTKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFL 682 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309 + +L AL++ + P + A Q ASF G ++T S+ T ++ Sbjct: 683 TLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEY 742 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L TV + L+I+ +SE + P A T +++P G +V Sbjct: 743 EDIGVNLVVASTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLV 801 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 802 MSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTKLT 861 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +A + P+ A E + Sbjct: 862 NKEGYRYNWEADE-----GSMQVAPRHAPECQ 888 >gi|171059300|ref|YP_001791649.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] gi|170776745|gb|ACB34884.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] Length = 662 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 66/395 (16%), Positives = 141/395 (35%), Gaps = 22/395 (5%) Query: 63 PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD-GKQMLNLDILIERDIA 121 +V+ V + A++ + R + + + + + + + + + D Sbjct: 196 DANVKMVFEALSRTANINIILDRDV----RADLRTTIYVQNASVEDTLDLILLQNQLDRR 251 Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L + + ++ V + I+ +Q A + +T L A S+S Sbjct: 252 VLNGNTIFVYPATPAKQREYNELKVRTFQLSNIEAAQMAT-IIKTMLKTRDVVTDAKSNS 310 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + + + + +++ ++ + S F F S Sbjct: 311 LVMRDTAASIAVAEKLIAANDVP-DPEVVLEVQVLEVSSDRLSNIGLRFPDAFTVGTPST 369 Query: 242 GGDFSVKGVLDRFSFETVLHALE-----RATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 L + +L + T LA P + A + + A G + Sbjct: 370 ATTVGDLRALTSDNLTASSLSLGLNLLLQDTDTNILASPRIRARNKEKARILVGDKVPVI 429 Query: 297 T--------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 T SS S+ D G+ L P V + G +G+++ EVS + Sbjct: 430 TNLITPQQSGQSSVITGSIQYVDVGIKLEVEPQVYADGDVGIKVNLEVSNIAKTITTSSG 489 Query: 349 PSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +Y+ R A T + L G T ++AGL+ D + +P L ++P++G LF ++ + Sbjct: 490 VAYQIGTRNATTALRLHDGETQMMAGLINDQDRSTASKLPGLGQLPVIGRLFTSTNASGG 549 Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 ++EI ++ TP +V+P + + + E + Sbjct: 550 KSEIVLSITPRIVRPQSTPEARLGEVWSGTESSVR 584 >gi|269961466|ref|ZP_06175830.1| Fimbrial assembly protein PilQ [Vibrio harveyi 1DA3] gi|269833843|gb|EEZ87938.1| Fimbrial assembly protein PilQ [Vibrio harveyi 1DA3] Length = 563 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 62/274 (22%), Positives = 109/274 (39%), Gaps = 38/274 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------- 221 ++++ L+I QV ++ I + + ++G + T Sbjct: 290 REIIESLDIP-VKQVQIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGL 348 Query: 222 -------------SSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERAT 267 SS G + + F V + + L AL++ + Sbjct: 349 YDGGGDGEGDDGGSSVGIDDFLNVNLAATSPNATSLAFQVAKLGSDTLLDLELSALQQES 408 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P L + + A G + Y SSS+GATSVT + L TP + R Sbjct: 409 KAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNR 467 Query: 328 IGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L + P V+ G+ + ++ T V + +G T+VL G+ + I + + Sbjct: 468 LVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKV 527 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 528 PLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 561 >gi|160872504|ref|ZP_02062636.1| putative fimbrial assembly protein PilQ [Rickettsiella grylli] gi|159121303|gb|EDP46641.1| putative fimbrial assembly protein PilQ [Rickettsiella grylli] Length = 442 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 102/252 (40%), Gaps = 27/252 (10%) Query: 182 KKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHS------------------ITG 221 ++++L+ + Q+ ++ + + ++ K++G Q + ++ Sbjct: 182 NRIIHLIKKLDKPIGQILIEARVVSIDQNKEKELGAQFNLSRMRPVNDLLKSTLRNEVSN 241 Query: 222 SSSGPSKSFAADF----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 ++ + D + + + L ALE+ A ++ P L Sbjct: 242 QNTHLLQHLTMDLPLFSANSLGLASLGLRLLNLGKNSFLDLELSALEKEGAAEVISTPHL 301 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 Q A +G + Y+ +S G TS+ + L TP ++ RI L ++ Sbjct: 302 ITADQQPAFIEAGDEIPYQEKASG-GGTSLIFKKAVLSLKVTPQIMPQERIILDLEVNQD 360 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 +P D P+ + R T + + SG TIVL G+ + +L++ +P L +P++G L Sbjct: 361 QP--NSVMVDAPTIKARGIKTQIIVKSGETIVLGGVYEYSQGKLEQRVPFLGSLPLIGRL 418 Query: 398 FRNSRFNREETE 409 FR ++ +E Sbjct: 419 FRLTKVYNRRSE 430 >gi|171060554|ref|YP_001792903.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] gi|170777999|gb|ACB36138.1| type II and III secretion system protein [Leptothrix cholodnii SP-6] Length = 760 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 57/258 (22%), Positives = 103/258 (39%), Gaps = 24/258 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +V L++ I EV R ++ +G + PS+ G + E G+ + + + Sbjct: 328 PEVVLELEILEVSRTKVRDLGITY--------PSEFAGPGSSGAKLFEIGELNRRTI--G 377 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---------VSSSTGA 304 L L +TLA P + + + A G + + S++T Sbjct: 378 VDTGYKLKLLRTDGDTKTLANPRVRVRNREKARVHVGDRVPVISSTIVGTTNLGSNNTPV 437 Query: 305 TS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTT 359 T+ + D G+ + PT+ + + + I +VS + R A T Sbjct: 438 TTEQIQYLDVGIKIEAEPTIYADDSVAISINLDVSSLGNQTRTNAGTTAYEVGTRNASTV 497 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T L GL++DD Q G+P L + P+L +F + R +R E+ + TP LV Sbjct: 498 LRLRDGETQALMGLIRDDDVQTGAGLPYLGEFPVLDRIFGSKRTDRRSRELVLLITPQLV 557 Query: 420 KPVAMRDLSRPDDHYSVE 437 + + D + + E Sbjct: 558 RGIEPADATLAEFWSGTE 575 >gi|163803103|ref|ZP_02196987.1| DNA-binding transcriptional regulator OxyR [Vibrio sp. AND4] gi|159173095|gb|EDP57927.1| DNA-binding transcriptional regulator OxyR [Vibrio sp. AND4] Length = 559 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 112/270 (41%), Gaps = 34/270 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFG---- 235 ++++ L+I QV ++ I + + ++G + ++ + +G S ++ Sbjct: 290 REIIQSLDIP-VKQVQIEARIVMINEGSMDELGVRWGLSSADAGYRLGGSIESNLATIGL 348 Query: 236 ------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 + + F V + + L AL++ + Sbjct: 349 YDGGDGDDSSSVDIDDLLNVNLAVTRPNAASIAFQVAKLGSDTLLDLELSALQQESKAEI 408 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 ++ P L + + A G + Y SSS+GATSV + L TP + R+ L Sbjct: 409 VSSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVTPQITPDNRLVLD 467 Query: 332 IQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + P V+ G+ + ++ T V + +G T+VL G+ + I + +PLL Sbjct: 468 LSVTQDRPGQVVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHSITNSVDKVPLLG 527 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419 +P+LGALFR + N ++E+ I TP +V Sbjct: 528 DLPLLGALFRRTYENVGKSELLIFVTPKVV 557 >gi|28373014|ref|NP_783687.1| hypothetical protein pYVa12790_p34 [Yersinia enterocolitica] gi|32470300|ref|NP_863535.1| hypothetical protein pYVe8081_p30 [Yersinia enterocolitica] gi|122815824|ref|YP_001004090.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|14579358|gb|AAK69235.1|AF336309_30 YscC [Yersinia enterocolitica] gi|23630586|gb|AAN37542.1| YscC [Yersinia enterocolitica] gi|121663698|emb|CAL10060.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 607 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 60/334 (17%), Positives = 125/334 (37%), Gaps = 16/334 (4%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 + + D + + L+R ++D+ I+ V + + V T +Q VE Sbjct: 194 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIP--QVATRASAQARVEA 249 Query: 164 SETFLSQSGRNQYANSS-SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + + R+ +++++ L+ + + ++I ++ D L ++G + G Sbjct: 250 DPSLNAIIVRDSPERMPMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 307 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279 +G + G + + ++ ++D + ++ LE + + ++ PTL Sbjct: 308 RTGNNHQVVIKTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLT 367 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336 A + K T YG +L TP VL+ G I L + E Sbjct: 368 QENAQAVIDHSETYYVKVTGKEVAELKGIT--YGTMLRMTPRVLTQGDKSEISLNLHIED 425 Query: 337 SEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + +P+ DT + G ++++ G+ +D++ +PLL IP LG Sbjct: 426 GNQKPNSSGIEGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLG 485 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ALFR T P ++ L+ Sbjct: 486 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 519 >gi|302877484|ref|YP_003846048.1| type II and III secretion system protein [Gallionella capsiferriformans ES-2] gi|302580273|gb|ADL54284.1| type II and III secretion system protein [Gallionella capsiferriformans ES-2] Length = 573 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 62/349 (17%), Positives = 116/349 (33%), Gaps = 63/349 (18%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL------NIAGEDQVT 197 ++L G + R +S + ++ N+ I+ E QV Sbjct: 222 RLILGGKDASDGKGARLPADRSLSVSPMSGVIVIRALPDEIRNVTAFLKASQISVERQVI 281 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------------- 242 L+ I +V+ + Q G + S G ++ Sbjct: 282 LEAKIIDVQLNDSFQSGVNWGAFKNGLNSFSSVGVGGAGSVLNPATAGVGATDISSAALS 341 Query: 243 ------------GDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G S+ G+ SF +L+ LE + L+ P ++ ++ Q A Sbjct: 342 ALPGASLLPNAAGTGSLFGLAFQTSSFALLLNFLESQGDVHVLSSPRISTLNNQKAVLKV 401 Query: 290 GGQHLYK---------TVSSSTGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSE 338 G + TV+ + A ++ T + G+VL TP + I L + +S Sbjct: 402 GTDEFFVTEISGGSQATVNVAGTAPTIKTQPFFSGIVLDVTPKIDENNEIILHVHPSISS 461 Query: 339 PVI---------GVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 +P S + + D+ V G + + GL++ D + G+P Sbjct: 462 VTTVNKVLNLGATTGTYTLPMASSSISETDSIVRARDGQIVAIGGLMRQDSTNGESGLPG 521 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKP--VAMRDLSRPDDHY 434 LSK ++F + + E+ I P +V D++R D Sbjct: 522 LSK-----SIFGQTSKVSSKRELVILLKPTVVDSDRDWSDDIARSRDRV 565 >gi|29840703|ref|NP_829809.1| general secretion pathway protein D [Chlamydophila caviae GPIC] gi|29835053|gb|AAP05687.1| general secretion pathway protein D [Chlamydophila caviae GPIC] Length = 753 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 75/372 (20%), Positives = 143/372 (38%), Gaps = 30/372 (8%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 +A E L+ S I ++ S G V+ + S+T + Sbjct: 392 GGSLASQESMLKEA--TSTIHIDTSSAGTAKEGSVK----YGNFIADSKTGTLIMVVEKE 445 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 A K ++ L++ + V ++V + E + ++ G G S + Sbjct: 446 ALPRIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKAGLNLLRLGEEVCKKSSMGISWAS 504 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + E G ++ L +R A P++ ++ A + Sbjct: 505 SGILEFLFKGSTGASLVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEMSI- 563 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 VS+ YG+++ P + G+ + ++T+++ G NA + P Sbjct: 564 AVSADKEKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNANERPDVTR 623 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 R V +P G T+++ GL + ++GIP L +IP +G LF + + +TE+F+ Sbjct: 624 RNITNKVRIPDGETVIIGGLRCKHVSDSQDGIPFLGEIPGVGKLFGMNSTSDSQTEMFVF 683 Query: 414 ATPFLVK-PVAMRDL-------SRPDDH-------YSVEDDAKAFF--FNRVNKIYGPKE 456 TP ++ P ++ SRP ++ ++ E+ AKA ++ I P Sbjct: 684 ITPKILDNPAEKKERHEEAVLSSRPGENIEFRKALFAGEEAAKAAHKKLELISAIELP-- 741 Query: 457 ASEVEGQNYKGA 468 AS+VEG Y G Sbjct: 742 ASQVEGLEYDGR 753 >gi|193062144|ref|ZP_03043240.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli E22] gi|194426396|ref|ZP_03058951.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli B171] gi|260845704|ref|YP_003223482.1| T3SS structure protein EscC [Escherichia coli O103:H2 str. 12009] gi|260858255|ref|YP_003232146.1| T3SS structure protein EscC [Escherichia coli O26:H11 str. 11368] gi|13447709|gb|AAK26708.1|AF200363_16 EscC [Escherichia coli] gi|18034513|gb|AAL57535.1|AF453441_19 EscC [Escherichia coli] gi|17384643|emb|CAC81855.1| EscC protein [Escherichia coli] gi|57434464|emb|CAI43881.1| EscC protein [Escherichia coli] gi|192932364|gb|EDV84962.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli E22] gi|194415704|gb|EDX31971.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli B171] gi|195183205|dbj|BAG66750.1| T3SS structure protein EscC [Escherichia coli O111:H-] gi|254692333|emb|CAR47974.1| EscC protein [Escherichia coli] gi|254692401|emb|CAR48044.1| EscC protein [Escherichia coli] gi|257756904|dbj|BAI28406.1| T3SS structure protein EscC [Escherichia coli O26:H11 str. 11368] gi|257760851|dbj|BAI32348.1| T3SS structure protein EscC [Escherichia coli O103:H2 str. 12009] gi|323163017|gb|EFZ48850.1| hypothetical protein ECE128010_0613 [Escherichia coli E128010] Length = 512 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 113/262 (43%), Gaps = 29/262 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ L+I + Q+ + V+I +V + L+Q+G S T ++ S +F + + Sbjct: 263 RQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGSIAFNSS------TA 315 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + S + + +F ++AL++ + + L++P++ ++ A + T S Sbjct: 316 QANLSSSVISNANNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346 S+ + G +L TP +L L ++ + Sbjct: 374 EKVASLESITSGTLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 433 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P + + T L +G +++L G ++D K+GIPLLS IP++G LF ++ + Sbjct: 434 ILPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGNLFSSTTKQKH 493 Query: 407 ETEIFIAATPFLVKPVAMRDLS 428 FL+K ++ S Sbjct: 494 S-----VVRLFLIKATPIKSAS 510 >gi|167041767|gb|ABZ06510.1| putative bacterial type II and III secretion system protein [uncultured marine microorganism HF4000_010L19] Length = 536 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 110/301 (36%), Gaps = 22/301 (7%) Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 +++ I VE + ++++ G + + + Q + ++ Sbjct: 249 ASTLSNIKITVEDTTRSIIVRGHKPDLDVIDAVLREIDIKTKQVLIEAFIVEATSDF--- 305 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---------F 238 Q L IA +++ + S + S A G Sbjct: 306 -------QKRLGSRIAAMQKQVRGDDVVTISGITGGGNAATSAADVALGAAAGTLAANAI 358 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + L + + + AL+ ++ P++ ++ Q A T G + Y+ Sbjct: 359 TGGTSGIGILKQLGARALKLEIEALQSLGISNIISSPSVFTLNNQEAKITQGTEIAYQV- 417 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 ++ G T+ + + L TP+V+ G I L IQ P V D P+ + + T Sbjct: 418 -TADGTTTTEFKEAALSLVVTPSVIGDGNILLDIQVNNDSPT-TVAGSDEPAIKTNEIKT 475 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + + G +V+ G+ + K P +SK+P++G LF+ + + E+ I P + Sbjct: 476 KLLVSDGDIVVIGGIKINTATDTKTATPGMSKLPVVGNLFKGKAVSDKMDELLIFIAPRV 535 Query: 419 V 419 + Sbjct: 536 I 536 >gi|269964448|ref|ZP_06178689.1| Fimbrial assembly protein PilQ [Vibrio alginolyticus 40B] gi|269830786|gb|EEZ85004.1| Fimbrial assembly protein PilQ [Vibrio alginolyticus 40B] Length = 581 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 37/273 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I + + ++G + T + + Sbjct: 309 REIIESLDIP-VKQVQIEARIVTINEGNMDELGIRWGFTSINGSNTVGGSIENNLATIGL 367 Query: 230 --------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATA 268 + + F V + + L AL++ + Sbjct: 368 YNGEGGDDGGDGDGVGIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQESK 427 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 ++ P L + + A G + Y SSS+GAT+VT + L TP + R+ Sbjct: 428 AEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVTPQITPDNRL 486 Query: 329 GLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 L + P V+ G+ + ++ T V + +G T+VL G+ + I + +P Sbjct: 487 VLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVP 546 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 LL +P+LGALFR S N ++E+ I TP +V Sbjct: 547 LLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 579 >gi|253995615|ref|YP_003047679.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera mobilis JLW8] gi|253982294|gb|ACT47152.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera mobilis JLW8] Length = 610 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 63/300 (21%), Positives = 116/300 (38%), Gaps = 42/300 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------GPSKSF 230 ++ ++ + + + QV ++ TI EVR Q G S +S+ G + Sbjct: 299 QEFLDKVLASAKRQVLIEATIVEVRLSDSFQAGIDWSRLNNSASNSGFQFRQQLGAQTNG 358 Query: 231 AADFGGKFVSEGGDFSVKG-----------VLDRFSFETVLHALERATAIRTLAEPTLTA 279 G F + F V V + ++ LE+ + + L+ P L Sbjct: 359 INATGNTFTTTANAFGVATNAGFVAGYLNPVSKIGNIAASINLLEQFGSTKVLSSPKLMV 418 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSV------------TTHDYGVVLHFTPTVLSPGR 327 ++ Q+A +Y TV S SV T GVV+ TP + Sbjct: 419 LNNQTAVLKVVDNLVYFTVQSQQSQGSVGGGILSTVTTTPNTVPVGVVMSVTPQINDLSN 478 Query: 328 IGLRIQTEVSE-------PVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 + + I+ VS P + +P +VR+ ++ +++ SG T VL GL++DD+ Sbjct: 479 VNINIRPTVSRVLGFKKDPNPNLTVESLVPEIQVREMESMLQILSGNTAVLGGLMQDDVL 538 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 + +P LSK+P +G +F +TE+ I P ++ ++ + Sbjct: 539 TNTDKVPGLSKVPGVGKVFTGQNDANRKTELVIFLRPTVIVSASLESDELASYKQYLPSQ 598 >gi|148263986|ref|YP_001230692.1| type II and III secretion system protein [Geobacter uraniireducens Rf4] gi|146397486|gb|ABQ26119.1| type II and III secretion system protein [Geobacter uraniireducens Rf4] Length = 796 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 69/374 (18%), Positives = 142/374 (37%), Gaps = 29/374 (7%) Query: 80 VVHSPRTMYLFGKNVGQA----NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 V + T+ ++ KN + + + + + ++ + + L+ Sbjct: 244 KVLNENTIIIYTKNPEKTKQYEELFV-----QTFYLNKLEAKKAVNLIRTMLQVR----K 294 Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 I V + +V+ I+ +Q+ +E ++ ++ SK +A Sbjct: 295 IYVNEEMNALVIRDTPDVIEVAQKILEANDLPDAEVVLEVEVIEISKNNAESFGLALSRY 354 Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 AE L + ++ + + + + ++ F G + + F+ Sbjct: 355 AVSTAAAAEGSSTFLSDVLVP-PVSTTPTNTTNTPTSNLLNYFRWRGFNGFLTVPNATFN 413 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDY 312 F L TLA P + + + A F G + T SS TG + +V D Sbjct: 414 FGKTLS------NSETLANPKIRVKNREKAKFNVGQRVPITTTSSPTGGGVSVNVQYVDV 467 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRKADTTVELPSGG 366 GV L+ PT+ + +++ EVS + G + + R DT + L G Sbjct: 468 GVKLNAEPTIQLNNEVSIKLSLEVSSILSKEKVGSTDSLTTVVTIGTRNLDTVLSLKDGE 527 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 T ++ GL++D + K+ I LL IP++G L + ++E+ +A TP +V+ + + + Sbjct: 528 TSIIGGLMQDLKSKNKQKIVLLGDIPLIGPLLSQNDDTNNKSELVLAITPRIVRSITIPE 587 Query: 427 LSRPDDHYSVEDDA 440 ED+ Sbjct: 588 GDVAAFWSGKEDEP 601 >gi|167033463|ref|YP_001668694.1| type II and III secretion system protein [Pseudomonas putida GB-1] gi|166859951|gb|ABY98358.1| type II and III secretion system protein [Pseudomonas putida GB-1] Length = 621 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 80/398 (20%), Positives = 145/398 (36%), Gaps = 39/398 (9%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + D + + I + +E + + + +R ++V+D V+ + Q ++ Sbjct: 212 FIFDKDLRPDMKATIFVRE--VRIEDAVALLLEQNQLRQKIVNDNTVMV-YPDSPQKTKD 268 Query: 160 AVELSET--FLSQSGRNQYANSSSK-------KVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 EL +L+ N N V LN V +AE Sbjct: 269 YQELVMRTFYLTSIDANTALNMVKTMLKTRDVFVDERLNTLTMRDTPDAVRMAEKLLQSQ 328 Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG----------------VLDRF 254 Q + + + S D G ++ + G S G + Sbjct: 329 DQSNPEVVLEVEVMEVATSRILDLGLQWPNTFGVLSNDGKPVSVLDQLKGIDSSRISISP 388 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT 308 + + ++A I TLA P + + + A G + + +S SVT Sbjct: 389 APQAKINA--SDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446 Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS-YRVRKADTTVELPSG 365 D G+ L PTV + +++ EVS P+ G +P R A T++ L G Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 T VLAGL+++D IP L IP LG LF +++ + ++E+ +A TP +V+ + + Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLPYQ 566 Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 S + E + + + P A + Sbjct: 567 SPSDMEFSTGTESAMQVRQMAPLPPMDVPGNAPTTDAP 604 >gi|29839808|ref|NP_828914.1| type III secretion protein SctC [Chlamydophila caviae GPIC] gi|29834155|gb|AAP04792.1| type III secretion protein SctC [Chlamydophila caviae GPIC] Length = 909 Score = 150 bits (380), Expect = 4e-34, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 116/334 (34%), Gaps = 54/334 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 ++ KV++LLN QV ++V I E + G Q G G + Sbjct: 565 QTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLS 624 Query: 236 GKFVSE---------------------------------GGDFSVKGVLDRFS------- 255 ++ F + + + S Sbjct: 625 NTGLANPAKATAPPLKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFL 684 Query: 256 -FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309 +L AL++ + P + A Q ASF G ++T S+ T ++ Sbjct: 685 TLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEY 744 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L T+ + L+I+ +SE + P A T +++P G +V Sbjct: 745 EDIGVNLVVASTIAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLV 803 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D ++ G+PLL+ IP++ LF + R++ I + P ++ Sbjct: 804 MSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTTLT 863 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 + Y +A + P+ A E + Sbjct: 864 NKEGYRYNWEADE-----GSMQVAPRHAPECQRP 892 >gi|156972409|ref|YP_001443316.1| type IV pilus secretin PilQ [Vibrio harveyi ATCC BAA-1116] gi|156524003|gb|ABU69089.1| hypothetical protein VIBHAR_00029 [Vibrio harveyi ATCC BAA-1116] Length = 583 Score = 150 bits (380), Expect = 4e-34, Method: Composition-based stats. Identities = 62/274 (22%), Positives = 109/274 (39%), Gaps = 38/274 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------- 221 ++++ L+I QV ++ I + + ++G + T Sbjct: 310 REIIESLDIP-VKQVQIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGL 368 Query: 222 -------------SSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERAT 267 SS G + + F V + + L AL++ + Sbjct: 369 YDGGGDGEGDDGGSSVGIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQES 428 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P L + + A G + Y SSS+GATSVT + L TP + R Sbjct: 429 KAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNR 487 Query: 328 IGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L + P V+ G+ + ++ T V + +G T+VL G+ + I + + Sbjct: 488 LVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKV 547 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 548 PLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 581 >gi|89897873|ref|YP_514983.1| general secretion pathway protein D [Chlamydophila felis Fe/C-56] gi|89331245|dbj|BAE80838.1| general secretion pathway protein D [Chlamydophila felis Fe/C-56] Length = 755 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 72/368 (19%), Positives = 133/368 (36%), Gaps = 30/368 (8%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + E LR + +I V T G V+ + S+T + A Sbjct: 398 SSAESMLRDAASTIHIDTSSVGAT--KEGSVK----YGNFIADSKTGTLIMVVEKEALPR 451 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 K ++ L++ + V ++V + E + +Q G G S A + + Sbjct: 452 IKMLLKKLDVP-KKMVRIEVLLFERKLSSQRQAGLNLLRLGEEVCKKTSSAVSWTSSGIL 510 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 E G S++ L +R A P++ ++ A + VS+ Sbjct: 511 EFLFKGSTGSSLVPSYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEMSI-AVSA 569 Query: 301 STGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 YG+++ P + G+ + ++T+++ G N + P R Sbjct: 570 DKEKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNTNERPDVTRRNIT 629 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 V +P G T+++ GL ++GIP L +IP +G LF + + +TE+F+ TP Sbjct: 630 NKVRIPDGETVIIGGLRCKHASDSQDGIPFLGEIPGIGKLFGMNSTSDSQTEMFVFITPK 689 Query: 418 LVK-PVAMRDLSRPDDHYSVEDDAKAFF----------------FNRVNKIYGPKEASEV 460 ++ P ++ S + F ++ I P AS+V Sbjct: 690 ILDNPAEKKERQEEAILSSRPGENAEFRKALCAGEEAAKAAHKKLELISAIELP--ASQV 747 Query: 461 EGQNYKGA 468 EG Y G Sbjct: 748 EGLEYDGR 755 >gi|89902101|ref|YP_524572.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89346838|gb|ABD71041.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 614 Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats. Identities = 66/384 (17%), Positives = 123/384 (32%), Gaps = 64/384 (16%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + +V G R++ S +A ++ + R K + IA E QV Sbjct: 238 ELTEAVKGLVGAGPGRSVVISPQAGIMAVHAMPDELRQ------VDKFLKAAQIAVERQV 291 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-- 254 L+ I EV Q G S + G + + G + + V+GV Sbjct: 292 MLEAKIVEVELRDGYQSGIDWSALKNGGGSTGAMGVIGGNTSATTSSNTLVRGVQSNLPG 351 Query: 255 -----------------------------SFETVLHALERATAIRTLAEPTLTAISGQSA 285 F+ VL LE ++ L+ P + ++ Q A Sbjct: 352 FSAGSALLADGISLPAAGAGLFGLAFATDGFQAVLGFLETQGDVQILSSPRIATLNNQKA 411 Query: 286 SFTSGGQHLYKT---------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 G + + T + + + ++T G+ L TP + +I L Sbjct: 412 VLKVGAEDFFVTNVSGGTTSSVTTGSTATLTMPSITLTPFFSGISLDVTPQIDEGTKIML 471 Query: 331 RIQTEVSEPVIGVNAGDM----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + V+ D+ S + + DT V + G + + GL++ + + Sbjct: 472 HVHPSVTTVSERAKQIDLGSAGNYVLPLASSSMNETDTLVRIQDGNIVAIGGLMQIESNR 531 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 G+P S +P+ LF N + E+ + P +++ +D D Sbjct: 532 KSSGLPGTSDVPLFSTLFGNHANTGRKKEVVVLIKPTIIR--TAQDWEAQTRRTRAALDD 589 Query: 441 KAFFFNRVNKIYGPKEASEVEGQN 464 RV +I G + Sbjct: 590 IDSVRARVIRIDGTVQEGAPRTPA 613 >gi|308094808|ref|ZP_05891872.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AN-5034] gi|308093421|gb|EFO43116.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AN-5034] Length = 628 Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 114/319 (35%), Gaps = 19/319 (5%) Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMV-SDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 ++ R + ++ + + V + ++ G ++ Sbjct: 218 VLSRVVGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRD 277 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---SK 228 Q +K++ L+ + Q ++V +I ++ + L+Q+G S Sbjct: 278 TQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDI 334 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSA 285 D V+ G S K +LD + + LE + + ++ PTL A Sbjct: 335 KTTGDVDNGDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEA 394 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPV 340 + K V T A + YG +L P ++ I L + E + Sbjct: 395 VLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKI 452 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 D+PS R + T + G ++++ G+ +D++ +PLL IP LGALFR+ Sbjct: 453 PDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRS 512 Query: 401 SRFNREETEIFIAATPFLV 419 + T P +V Sbjct: 513 NTNTTRRTVRMFIIEPRIV 531 >gi|308095101|ref|ZP_05903504.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus Peru-466] gi|308085930|gb|EFO35625.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus Peru-466] Length = 624 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 114/319 (35%), Gaps = 19/319 (5%) Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMV-SDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 ++ R + ++ + + V + ++ G ++ Sbjct: 214 VLSRVVGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRD 273 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---SK 228 Q +K++ L+ + Q ++V +I ++ + L+Q+G S Sbjct: 274 TQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDI 330 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSA 285 D V+ G S K +LD + + LE + + ++ PTL A Sbjct: 331 KTTGDVDNGDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEA 390 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPV 340 + K V T A + YG +L P ++ I L + E + Sbjct: 391 VLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKI 448 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 D+PS R + T + G ++++ G+ +D++ +PLL IP LGALFR+ Sbjct: 449 PDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRS 508 Query: 401 SRFNREETEIFIAATPFLV 419 + T P +V Sbjct: 509 NTNTTRRTVRMFIIEPRIV 527 >gi|91227284|ref|ZP_01261709.1| fimbrial assembly protein [Vibrio alginolyticus 12G01] gi|91188678|gb|EAS74967.1| fimbrial assembly protein [Vibrio alginolyticus 12G01] Length = 560 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 37/273 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I + + ++G + T + + Sbjct: 288 REIIESLDIP-VKQVQIEARIVTINEGNMDELGIRWGFTSINGSNTVGGSIENNLATIGL 346 Query: 230 --------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATA 268 + + F V + + L AL++ + Sbjct: 347 YNGEGGDDGGDGDGVGIDDFLNVNLAATSPNATSLAFQVAKLGSDTLLDLELSALQQESK 406 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 ++ P L + + A G + Y SSS+GAT+VT + L TP + R+ Sbjct: 407 AEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVTPQITPDNRL 465 Query: 329 GLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 L + P V+ G+ + ++ T V + +G T+VL G+ + I + +P Sbjct: 466 VLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVP 525 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 LL +P+LGALFR S N ++E+ I TP +V Sbjct: 526 LLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 558 >gi|10955572|ref|NP_052413.1| secretin YscC [Yersinia enterocolitica] gi|332163594|ref|YP_004424936.1| putative type III secretion protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|267564|sp|Q01244|YSCC_YEREN RecName: Full=Yop proteins translocation protein C; Flags: Precursor gi|155552|gb|AAC37020.1| yscC [Yersinia enterocolitica] gi|4324359|gb|AAD16836.1| secretin YscC [Yersinia enterocolitica W22703] gi|318608189|emb|CBY78163.1| type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) [Yersinia enterocolitica subsp. palearctica Y11] gi|325667824|gb|ADZ44467.1| putative type III secretion protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 607 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 122/334 (36%), Gaps = 16/334 (4%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVE 162 + + D + + L+R ++D+ I+ V + + + + Q A Sbjct: 194 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIPQAATRASAQARVEADP 251 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + + + +++++ L+ + + ++I ++ D L ++G + G Sbjct: 252 SLNAIIVRDSPERM--PMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 307 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279 +G + G + + ++ ++D + ++ LE + + ++ PTL Sbjct: 308 RTGNNHQVVIKTTGDQSNIASNGALGSLVDARGLDYLLARVNLLENEGSAQVVSRPTLLT 367 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336 A + K T YG +L TP VL+ G I L + E Sbjct: 368 QENAQAVIDHSETYYVKVTGKEVAELKGIT--YGTMLRMTPRVLTQGDKSEISLNLHIED 425 Query: 337 SEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + +P+ DT + G ++++ G+ +D++ +PLL IP +G Sbjct: 426 GNQKPNSSGIEGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIG 485 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ALFR T P ++ L+ Sbjct: 486 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 519 >gi|153836207|ref|ZP_01988874.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AQ3810] gi|308126333|ref|ZP_05909374.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AQ4037] gi|149750482|gb|EDM61227.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AQ3810] gi|308110700|gb|EFO48240.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus AQ4037] Length = 624 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 92/241 (38%), Gaps = 15/241 (6%) Query: 192 GEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFS 246 + Q ++V +I ++ + L+Q+G S D V+ G S Sbjct: 289 DQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIIDIKTTGDVDNGDVTLGSGQS 348 Query: 247 VKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 K +LD + + LE + + ++ PTL A + K V T Sbjct: 349 FKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKETA 408 Query: 304 ATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 A + YG +L P ++ I L + E + D+PS R + T Sbjct: 409 A--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDLPSVRKTEIST 466 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + G ++++ G+ +D++ +PLL IP LGALFR++ T P + Sbjct: 467 LATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFIIEPRI 526 Query: 419 V 419 V Sbjct: 527 V 527 >gi|196233070|ref|ZP_03131918.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] gi|196222877|gb|EDY17399.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] Length = 874 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 103/264 (39%), Gaps = 21/264 (7%) Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 S + + D GG V S ++ AL R + Sbjct: 578 VDVSSGHGILNFNNLLSQDTIRSVAGVGGSGVTGFVTAGNSLTAIVTALMNTNRFRVVTR 637 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSS------------TGATSVTTHDYGVVLHFTPTV 322 P++ + + A SG + T S +SV + L P + Sbjct: 638 PSVFTRNNKKAIIASGQEIPVPTSIQSALNAGTTVNTGLVTQSSVQFKRVALQLEVVPLI 697 Query: 323 LSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + L + ++ + ++ D+P+ R T+V +P+ GT+VL GL++ + + Sbjct: 698 NADREVSLDVLQKIDQVSGSTRIDNNDIPNIATRYVKTSVTVPNEGTVVLGGLIQQSMNK 757 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL--VKPVAMRDLSRPDDHYSVED 438 ++ GIPLLS IP LG LF ++ + TE+ I P + P A + R + S++ Sbjct: 758 VRSGIPLLSSIPGLGYLFSSTTKEKIRTELVILIRPEVSWAPPEAAQIRERAQEVLSMDP 817 Query: 439 DAKAFFFNRVNKIYGPKEASEVEG 462 D +A G ++A EG Sbjct: 818 DLEASLSKN-----GVRKAEAPEG 836 >gi|308125791|ref|ZP_05777362.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus K5030] gi|308114494|gb|EFO52034.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus K5030] Length = 559 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 36/272 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I + + ++G + T + + Sbjct: 288 REIIESLDIP-VKQVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 346 Query: 230 -------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAI 269 + + F V + + L AL++ + Sbjct: 347 YEGGGDGEGEEGGVGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKA 406 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L + + A G + Y SSS+GATSVT + L TP + R+ Sbjct: 407 EIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNRLV 465 Query: 330 LRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L + P V+ G+ + ++ T V + +G T+VL G+ + I + +PL Sbjct: 466 LDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPL 525 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L +P+LGALFR S N ++E+ I TP +V Sbjct: 526 LGDLPLLGALFRRSYENVGKSELLIFVTPKVV 557 >gi|46398274|gb|AAS91828.1| AscC [Aeromonas hydrophila] Length = 618 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 65/331 (19%), Positives = 126/331 (38%), Gaps = 18/331 (5%) Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM-VRTIQDSQRAVELSE 165 + + D +E L L R ++D+ V+MV+ G V + Q +A Sbjct: 205 RSIQYRDTDVEAP--GLATILARLLSDAG--VQMVNGEGNKKGAAVTSGQAIVQADPSLN 260 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225 + + + A K++ L+ + + ++I ++ + L Q+G + G +G Sbjct: 261 AVIVRDTPERMAMYG--KLIAALDKPAAR-IEVALSIIDINAEDLSQLGVDWRV-GIRTG 316 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISG 282 ++ G G ++ ++D + ++ LE + ++ PTL Sbjct: 317 SNQQVIIKTTGDRKGIEGAAALGSLVDSKGLDYLLARVNLLENEGNAQVISRPTLLTQEN 376 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEV-SE 338 A + K S + YG +L TP V+ I L + E S+ Sbjct: 377 TQAVIDHSETYYVKI--SGERVAELQGITYGTMLRMTPRVVQMWDKPEISLSLHIEDGSQ 434 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G A +P+ + DT + G ++++ G+ +D++ + +P L IP LGALF Sbjct: 435 KPNGTGADGLPTIQRTVVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALF 494 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 R+ + P L+ LS Sbjct: 495 RSKDTQTRRSVRLFIIEPRLIDDGIAHYLSL 525 >gi|28898470|ref|NP_798075.1| putative type III secretion protein YscC [Vibrio parahaemolyticus RIMD 2210633] gi|28806688|dbj|BAC59959.1| putative type III secretion protein YscC [Vibrio parahaemolyticus RIMD 2210633] Length = 632 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 114/319 (35%), Gaps = 19/319 (5%) Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMV-SDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 ++ R + ++ + + V + ++ G ++ Sbjct: 222 VLSRVVGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRD 281 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---SK 228 Q +K++ L+ + Q ++V +I ++ + L+Q+G S Sbjct: 282 TQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDI 338 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSA 285 D V+ G S K +LD + + LE + + ++ PTL A Sbjct: 339 KTTGDVDNGDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEA 398 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPV 340 + K V T A + YG +L P ++ I L + E + Sbjct: 399 VLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKI 456 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 D+PS R + T + G ++++ G+ +D++ +PLL IP LGALFR+ Sbjct: 457 PDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRS 516 Query: 401 SRFNREETEIFIAATPFLV 419 + T P +V Sbjct: 517 NTNTTRRTVRMFIIEPRIV 535 >gi|330813196|ref|YP_004357435.1| hypothetical protein SAR11G3_00221 [Candidatus Pelagibacter sp. IMCC9063] gi|327486291|gb|AEA80696.1| hypothetical protein SAR11G3_00221 [Candidatus Pelagibacter sp. IMCC9063] Length = 518 Score = 150 bits (378), Expect = 7e-34, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 104/265 (39%), Gaps = 32/265 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKS 229 KV+ +++ + QV ++ I E + +G + G+SS S + Sbjct: 259 DKVIKEIDVRTK-QVLIEAFIVEADSTFEQALGTRLGGAYSAKKDYKIGGIGASSMASVT 317 Query: 230 FAADFGGKFVSEGG------DFSVKGVLDRFS---------FETVLHALERATAIRTLAE 274 A G + GG DF+ G + + ALE +T++ Sbjct: 318 PPAGPGPSAAAIGGVTDALTDFAAVGATSGIGILRQTGSAVLKAEITALEVLGKGKTISN 377 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P + + Q A+ T G + Y+ S TS + + L TP+++ G + L I Sbjct: 378 PKVFTLDNQIATITQGEEISYQATGSEGADTS--FKEAALKLTVTPSIIGDGNVLLEI-- 433 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 V+ + PS + T + + G +V+ G+ K+ + K P + +P+L Sbjct: 434 MVNNNTVNRANAGEPSINKMEISTKLLVADGDIVVIGGIKKNKVFSSKSQTPGVGNLPVL 493 Query: 395 GALFRNSRFNREETEIFIAATPFLV 419 G LF+ + + E+ I P ++ Sbjct: 494 GNLFKGKSKSDKLDELLIFIAPRIL 518 >gi|328468919|gb|EGF39879.1| putative type III secretion protein YscC [Vibrio parahaemolyticus 10329] Length = 628 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 17/242 (7%) Query: 192 GEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSF----AADFGGKFVSEGGDF 245 + Q ++V +I ++ + L+Q+G TG S G ++ D V+ G Sbjct: 293 DQPQSRIEVALSIVDISANDLRQLGVDWR-TGVSVGNNRIVDIKTTGDVDNGDVTLGSGQ 351 Query: 246 SVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 S K +LD + + LE + + ++ PTL A + K V T Sbjct: 352 SFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLVGKET 411 Query: 303 GATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 A + YG +L P ++ I L + E + D+PS R + Sbjct: 412 AA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGTKIPDGGVDDLPSVRKTEIS 469 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + G ++++ G+ +D++ +PLL IP LGALFR++ T P Sbjct: 470 TLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRTVRMFIIEPR 529 Query: 418 LV 419 +V Sbjct: 530 IV 531 >gi|114330532|ref|YP_746754.1| type II and III secretion system protein [Nitrosomonas eutropha C91] gi|114307546|gb|ABI58789.1| type II and III secretion system protein [Nitrosomonas eutropha C91] Length = 767 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 88/407 (21%), Positives = 151/407 (37%), Gaps = 65/407 (15%) Query: 51 SIGLNKVIILQVPVDVQ-DVLVSDPTKADV------------VVHSPRTMYLF----GKN 93 + G+N V V + + V D + DV V + T+ ++ K Sbjct: 207 TAGINFVFDRNVQQEATASMFVRDNSIEDVLKLLLLTNQLAYKVLNSNTLLIYPDTPAKQ 266 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 + + + + D+ + +R + +I V + V+ Sbjct: 267 K--------DYQELVVRSFHVA-NTDVKQMVAMIRGLVKARDIYVNEKLNLFVIR----- 312 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D+ + L E ++ +N + +V L V + EV+RD ++ Sbjct: 313 --DTLEMIRLVERLVA------------------INDFPDPEVMLDVVVLEVKRDNTLEL 352 Query: 214 GFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----ETVLHALERATA 268 G + + S P A V + G SF + + T Sbjct: 353 GPNMPTSVTFSAIPGVGAPAQAAADSVVKMSMIKNAGFEGLRSFTISNQAKIDFGRTLTN 412 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSP 325 LA P + S + A G + TV+++ A S T D G+ P V + Sbjct: 413 ADVLANPRIRVKSREKAKIHIGNKEPVFTVTNTANVGSAASATYIDVGLKFEVEPVVRTN 472 Query: 326 GRIGLRIQTEVSEPVI------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 + L+ EVS + G NA R A+T +EL G T VLAGL++DD+ Sbjct: 473 NEVTLKALLEVSSNLGEKRSGGGDNAATAIVIGTRTAETVLELRDGETQVLAGLIQDDLS 532 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++K GI L++IPILG +F +TEI + TP +++ V + Sbjct: 533 RVKSGIAGLTEIPILGDIFSKQVRKHNKTEIILLITPHIIRNVVQPN 579 >gi|148979183|ref|ZP_01815362.1| fimbrial assembly protein [Vibrionales bacterium SWAT-3] gi|145961941|gb|EDK27231.1| fimbrial assembly protein [Vibrionales bacterium SWAT-3] Length = 564 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 111/267 (41%), Gaps = 31/267 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--------- 232 + ++ L+I QV ++ I V ++G + ++ ++ + + Sbjct: 298 RGIIESLDIP-VKQVQIEARIVTVTEGNFDELGVRWGVSSTNGSFTVGGSIEGNHPSAIT 356 Query: 233 ---DFGGKFV---------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 D GG V + F V + + L AL++ + ++ Sbjct: 357 PYDDDGGSSVIDDYLNVNLAATSPNASSIAFQVAKLGSDTLLDLELSALQQESKAEIISS 416 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 P L + + A G + Y SSS+GATSV + L TP + R+ L + Sbjct: 417 PRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSV 475 Query: 335 EVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 P V+ G+ + ++ T V + +G T+VL G+ + + + +PLL +P Sbjct: 476 TQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLP 535 Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419 +LGALFR S N ++E+ I TP +V Sbjct: 536 LLGALFRRSYENVGKSELLIFVTPKVV 562 >gi|254229802|ref|ZP_04923209.1| type IV pilus secretin PilQ subfamily [Vibrio sp. Ex25] gi|262393099|ref|YP_003284953.1| type IV pilus biogenesis protein PilQ [Vibrio sp. Ex25] gi|151937701|gb|EDN56552.1| type IV pilus secretin PilQ subfamily [Vibrio sp. Ex25] gi|262336693|gb|ACY50488.1| type IV pilus biogenesis protein PilQ [Vibrio sp. Ex25] Length = 582 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 108/274 (39%), Gaps = 38/274 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I + + ++G + T + + Sbjct: 309 REIIESLDIP-VKQVQIEARIVTINEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 367 Query: 230 ---------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERAT 267 + + F V + + L AL++ + Sbjct: 368 YNGGGEGEDGGDGDGVGIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQES 427 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P L + + A G + Y SSS+GAT+VT + L TP + R Sbjct: 428 KAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVTPQITPDNR 486 Query: 328 IGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L + P V+ G+ + ++ T V + +G T+VL G+ + I + + Sbjct: 487 LVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKV 546 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 547 PLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 580 >gi|74317318|ref|YP_315058.1| type II secretion system protein D [Thiobacillus denitrificans ATCC 25259] gi|74056813|gb|AAZ97253.1| type II secretion system protein D [Thiobacillus denitrificans ATCC 25259] Length = 667 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 9/225 (4%) Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 IT + ++ G++ S + A LA P Sbjct: 346 DIGITPPTEATFRTLGPSGAPSTTLADLKGLNSGLIGVSSLSASVRARMDNGDTNLLANP 405 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIG 329 + + + A G + T + ++ T +V D G+ P + + Sbjct: 406 RIRVKNREKAKVHIGERVPIITTTVTSAGTTSFLPETVNYLDVGIKFEVEPLISLNDEVT 465 Query: 330 LRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 +++ EVS + + + ++ R A TT+ L G T LAGL+ D+ ++ GIP Sbjct: 466 IKVALEVSSLGQKSVTKSGSEVYRVGTRNASTTLALRDGETQALAGLISDEERETVNGIP 525 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 +IP +G LF + + ++TEI + TP +V+ + L+ D Sbjct: 526 GFGRIPAIGRLFASKSNSTDKTEIVLLITPHIVRNLDRTALTASD 570 >gi|28899520|ref|NP_799125.1| fimbrial assembly protein [Vibrio parahaemolyticus RIMD 2210633] gi|28807756|dbj|BAC61009.1| fimbrial assembly protein [Vibrio parahaemolyticus RIMD 2210633] Length = 578 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 36/272 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I + + ++G + T + + Sbjct: 307 REIIESLDIP-VKQVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 365 Query: 230 -------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAI 269 + + F V + + L AL++ + Sbjct: 366 YEGGGDGEGEEGGVGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKA 425 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L + + A G + Y SSS+GATSVT + L TP + R+ Sbjct: 426 EIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNRLV 484 Query: 330 LRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L + P V+ G+ + ++ T V + +G T+VL G+ + I + +PL Sbjct: 485 LDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPL 544 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L +P+LGALFR S N ++E+ I TP +V Sbjct: 545 LGDLPLLGALFRRSYENVGKSELLIFVTPKVV 576 >gi|284008887|emb|CBA75707.1| protein transport protein HofQ [Arsenophonus nasoniae] Length = 347 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 5/230 (2%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVL 251 + QV + I R+ L ++G ++ + S + + Sbjct: 118 QQQVQITAYIINTSREALYELGIFWELSSDKINQVGISRLNIHQPAPSSIPHIAFNIAKI 177 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 L ALE+ + +A P L A SAS G + Y S + + + Sbjct: 178 KSHLLSLELSALEQENQLSIIASPRLMASHNHSASIKQGTEIPYII--QSKNKSQIKFKE 235 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIV 369 + + TPT+L G++ L ++ + P N + ++ T V + G T++ Sbjct: 236 AILGMEVTPTILRGGKVRLALKISQNTPNTSLLANTYQHIAINKQEISTQVTINHGETLI 295 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L G+ + ++ IP L+ IP G LF E+ I TP L+ Sbjct: 296 LGGIFQQKKNNQQQKIPYLADIPFFGQLFTKDGKQTYHRELVIFITPQLI 345 >gi|317407766|gb|EFV87693.1| hypothetical protein HMPREF0005_03214 [Achromobacter xylosoxidans C54] Length = 675 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 86/245 (35%), Gaps = 10/245 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVS 240 ++++ L++ V ++ I +V + + ++G + G SS A G Sbjct: 295 RQLIEQLDVPSTL-VEIEAMIVDVNSEAISELGVNWGVNVGRSSIGYGDLALKPSGGLPV 353 Query: 241 EGGDFSVKGVLD---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + G L S + AL+ A L++P++ A Sbjct: 354 DSAAKLSPGTLGLSLGTSLAARVRALQSRGAANILSQPSILTADNLGAMIDLSETFYISL 413 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 +VT G L TP ++ G++ L + E V +P+ R Sbjct: 414 RGERV--ATVTPVTVGTSLRVTPRYIAAAQGGQVELTVDIEDGSVQSEVEIDGLPTVRKS 471 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T + T+++ G + + +PLL IP+LG LF + + E Sbjct: 472 NISTLAVVGDQQTLLIGGYNSSQNTEQVDKVPLLGDIPLLGTLFSSKSKTVQRRERLFLI 531 Query: 415 TPFLV 419 P LV Sbjct: 532 RPRLV 536 >gi|196230668|ref|ZP_03129529.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] gi|196225009|gb|EDY19518.1| type II and III secretion system protein [Chthoniobacter flavus Ellin428] Length = 864 Score = 149 bits (377), Expect = 8e-34, Method: Composition-based stats. Identities = 74/411 (18%), Positives = 140/411 (34%), Gaps = 120/411 (29%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + A+ + ++ Q ++++ G QV ++ E+++ LK++GF Sbjct: 459 NASAIYIIKSSRLIVRNTQDQLDLVEQIVTSTGGQGPVQVEIESKFVEIQQTNLKELGFD 518 Query: 217 H-------------------------------------------SITGSSSGPSKSFAAD 233 SIT + + +A+ Sbjct: 519 WLLGQFNLPSTYNAFAGGGTTGTAPALNPSDFPFVNGGVPVGQNSITAGNRSGNNGISAN 578 Query: 234 --------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 G +V GV F+ V+ AL + + L+ P +T SGQ A Sbjct: 579 AIDALLFPINGSSQVAPAIAAVAGVFTDPQFQLVIRALNQKKGVDLLSSPKVTTKSGQRA 638 Query: 286 SFTSGGQHLYKT-------------------------------VSSSTGATSVTTHDYGV 314 + Y T + T T+ T + GV Sbjct: 639 VIEIIREFRYPTEFTPPQIPQTFGNTGGGILGGGGGSSSTGSFPVTPTTPTAFETRNTGV 698 Query: 315 VLHFTPTVLSPGR-IGLRIQTEV-------------------------SEPVIGVNAGDM 348 L P + G I L + +V ++ VI N + Sbjct: 699 TLEVEPVIGPDGYTIDLNLVPQVVEFEGFINYGSPITSSVTNPITGTSTQAVITPNVINQ 758 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + RK T+V + G T+VL GL+++D+Q++++ +P++ +PI+G LFR+S + Sbjct: 759 PIFSTRKVTTSVSVYDGSTVVLGGLIREDVQKVEDKVPIIGDVPIIGRLFRSSIDQHIKR 818 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + I T L+ + ED+ + ++K+ P+ A + Sbjct: 819 NLIIFVTARLINAA--------GEPVRAEDEKEEV----IDKVPAPELAPQ 857 >gi|294055173|ref|YP_003548831.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] gi|293614506|gb|ADE54661.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] Length = 709 Score = 149 bits (377), Expect = 9e-34, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 21/267 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K++++ ++I QV ++V I EV + G + P + G V Sbjct: 394 KELIDKIDIPLP-QVRIEVIITEVTLTENQASGLSSFAATFNDRPDITNLPVQGTGPVGL 452 Query: 242 GGD-FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G D F++ + F+ VL E ++ L+ P++ + +T ++ Sbjct: 453 GLDNFNISSQIGDFAISAVLDLAEDDDNVKILSTPSIVVSHNEEGKINVSQSRPIETGTT 512 Query: 301 STGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-------------EPVIG 342 + + D G+ L TP + + G + + I+ V E Sbjct: 513 TNTTSETVTNQIEYRDVGIQLTVTPLIGADGSVTMTIEQTVDTIFSESSTTNTGDEDGTT 572 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + P VR+A++T+ + I+L GL ++ + + P++ ++P++G L + Sbjct: 573 SSVDTNPVIGVREANSTITVNDREVIILGGLQENQREVSRTYFPIIGRMPLIGDLLSGKQ 632 Query: 403 FNREETEIFIAATPFLVK-PVAMRDLS 428 TE+ I P +++ P A +L+ Sbjct: 633 IEYNRTELIIFVRPTILRNPQAATELT 659 >gi|212702669|ref|ZP_03310797.1| hypothetical protein DESPIG_00697 [Desulfovibrio piger ATCC 29098] gi|212673941|gb|EEB34424.1| hypothetical protein DESPIG_00697 [Desulfovibrio piger ATCC 29098] Length = 651 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 71/393 (18%), Positives = 128/393 (32%), Gaps = 48/393 (12%) Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA--DSNIRVEMVSDTVVLHGMVRTIQDS 157 D K + +A + + S + V+ + L G ++ Sbjct: 185 YAWAEDMKVNSMDSTVTIPGVASILQAMANGTPLTGSQVTVQPSAQGG-LRGKGLIAMNA 243 Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVM-----NLLNIAGEDQ----------------- 195 + SQ G++Q S ++ N + + + Sbjct: 244 STDTSQAAPAASQGGKDQSGTPSGPSIIADPRVNAVVVTDAEYRMSYYAKVIADLDKPVE 303 Query: 196 -VTLKVTIAEVRRDILKQIGFQHSITGSSS--------GPSKSFAADFGGKFVSEGGDFS 246 V + I ++ D + G S TG+ S + F S G S Sbjct: 304 LVEIHAAIVDIDSDFSRDFGVNWSGTGAYGKHWTGGGSAGGTSTSGIFPSAGASSAGGLS 363 Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + S F + ALE R L +P++ + AS + + S + Sbjct: 364 YSTLYSHGSDYFLARVTALEEDGQARVLGKPSVLTMDNVQASLENTSSYYVPV--SGNES 421 Query: 305 TSVTTHDYGVVLHFTPTVLSP-----GRIGLRIQTEVSEPV----IGVNAGDMPSYRVRK 355 + + D G VL TP ++ I L + + V+ ++ + K Sbjct: 422 SDLFKIDSGTVLKVTPHIIPGLPGQADSIKLMVSVQDDRDDGSNLFSVDPNNLSPIKQTK 481 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +T + G ++++ G + + GIP L IPILG LF + + E I T Sbjct: 482 INTQAIVGEGQSLLIGGHYYEIQSDAETGIPGLKNIPILGGLFGATGKKHQRMERLILIT 541 Query: 416 PFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNR 447 P +V+ A +R DD +A + R Sbjct: 542 PRIVRMDTASNVPTRVDDPRFSRTPTQADYEER 574 >gi|299139665|ref|ZP_07032838.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] gi|298598289|gb|EFI54454.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] Length = 838 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 70/337 (20%), Positives = 125/337 (37%), Gaps = 49/337 (14%) Query: 117 ERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + D + + LR + I + D +VL G Sbjct: 300 QNDANEILIALRNMLDPAIKIYLVSTQDAIVLRGTPD----------------------- 336 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----QHSITGSSSGPSKSFA 231 + K++N L+ + +V + V + EV +D + +G S+T +S + + A Sbjct: 337 -ELMLAGKLINDLD-REKPEVVIDVAVMEVDKDKTRTLGITLPQSFSLTPQASSSNNNNA 394 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQ 283 A+ S+ L + ++AL + T R L P L A GQ Sbjct: 395 ANNNSNSGSQSSSSFTLNTLANTNATNFAVTVTGGTVNALLQDTNTRILQNPRLRATDGQ 454 Query: 284 SASFTSGGQHLYKTVSSSTG---------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 A+ G + + S S+ T T D G + TP V S G + L+++ Sbjct: 455 KATLKIGQRVPIASGSLSSPVGGVSSLGVQTQFTYVDVGTNMDITPAVHSDGSVSLKMKV 514 Query: 335 EVSEPVI--GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 EVS+ ++ P + + T++L G +LAGL+ G P L ++P Sbjct: 515 EVSQVDTYDTISGVQEPVIGQKVLEQTIKLRDGEPSILAGLVTKQDSVAGSGTPGLGELP 574 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 +L LF + EI P +++ ++ L+ Sbjct: 575 VLKYLFGTQTKTLQNDEIVFLLVPHIIRETLLQKLNL 611 >gi|312883863|ref|ZP_07743580.1| hypothetical protein VIBC2010_01233 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368321|gb|EFP95856.1| hypothetical protein VIBC2010_01233 [Vibrio caribbenthicus ATCC BAA-2122] Length = 619 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 92/241 (38%), Gaps = 15/241 (6%) Query: 192 GEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFS 246 + Q ++V +I ++ + L Q+G S + D V G + Sbjct: 284 DQPQSRIEVALSIVDISANNLSQLGVDWRAGVSVGNNKIVDINTTGDVTNGDVLLGSGQT 343 Query: 247 VKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 +LD + ++ LE + + ++ PTL A ++ K V T Sbjct: 344 FNSLLDATNLNFLLAQINLLESQGSAQVVSRPTLLTQENVEAVLSNSTTFYVKLVGRETA 403 Query: 304 ATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 A T YG +L P ++ I L + E + +PS R + T Sbjct: 404 ALDEVT--YGTLLRIVPRIVGDRFAERPEINLSLNLEDGAQIPDNVIDGVPSIRKTEIST 461 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + G ++++ G+ +D+I Q +PLL IP LGALFR++ T P + Sbjct: 462 LATVKQGQSLLIGGVYRDEISQQLRKVPLLGDIPYLGALFRSTNDITRRTVRMFIIEPRI 521 Query: 419 V 419 V Sbjct: 522 V 522 >gi|326794354|ref|YP_004312174.1| type III secretion outer membrane pore, YscC/HrcC family [Marinomonas mediterranea MMB-1] gi|326545118|gb|ADZ90338.1| type III secretion outer membrane pore, YscC/HrcC family [Marinomonas mediterranea MMB-1] Length = 713 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 27/358 (7%) Query: 79 VVVHSPRTMYLFGKN---VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 + R++ K+ G A+++ L+G K L +D D ++ F A Sbjct: 202 YALADDRSINYRNKSINIPGVASMLSNLLGGGKKAPLAID---TMDFKSPAQSMEAFSAM 258 Query: 134 SNIRVEMVSDTVVLHGMVRTI-----QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + +++ + + D+ + + + K++ L Sbjct: 259 QENSISRINNRIADRYATPSEINAKLSDNSKVNSTISADTRNNAILIRDDYERKEMYEDL 318 Query: 189 NIAGEDQ----VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 IA DQ + + I ++ R+ L ++GF G S F+ G Sbjct: 319 -IAQLDQPRHVIEIDAIILDIDREKLSELGFNW--QGGSGNTEAKINTSGADPFLKSGSS 375 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 +V + D F + ALE +A P++ I Q A K S+ Sbjct: 376 ATVT-IQDFDHFFAQIRALETDGDASLVANPSILTIENQPAIIDFNNTAFIK--STGERV 432 Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 +V+ G L P ++ I L + E + + D PS T Sbjct: 433 ANVSEITAGTSLQVLPRLIDSEAERVIQLFLDIE-DGDIESNSGADTPSVSKGSISTQAV 491 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + ++V+ G + Q + +PLL +P +G LF + + E TP LV Sbjct: 492 IKTERSLVIGGFKVEQNTQRESKVPLLGDLPGIGKLFSYTSKAHSKRERLFIITPRLV 549 >gi|308126655|ref|ZP_05911606.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AQ4037] gi|308108444|gb|EFO45984.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AQ4037] Length = 582 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 59/274 (21%), Positives = 108/274 (39%), Gaps = 38/274 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I + + ++G + T + + Sbjct: 309 REIIESLDIP-VKQVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 367 Query: 230 ---------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERAT 267 + + F V + + L AL++ + Sbjct: 368 YEGGGDGEGEEGGDGVGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQES 427 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P L + + A G + Y SSS+GATSVT + L TP + R Sbjct: 428 KAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNR 486 Query: 328 IGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L + P V+ G+ + ++ T V + +G T+VL G+ + I + + Sbjct: 487 LVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKV 546 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 547 PLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 580 >gi|54124974|gb|AAV30242.1| YscC [Aeromonas hydrophila] Length = 614 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 57/319 (17%), Positives = 113/319 (35%), Gaps = 17/319 (5%) Query: 119 DIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 D + L R ++D+ ++ V V G Q L+ + + Sbjct: 215 DAPGVATILSRLLSDAGVQMVNGEGAKGV--GTNSGQAIVQADPSLNAVLVRDAPERMAM 272 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 K++ L+ + + ++I ++ + L Q+G + G +G ++ G Sbjct: 273 YG---KLIAALDKPAAR-IEVALSIIDINAEDLSQLGVDWRV-GIRTGSNQQVIIKTTGD 327 Query: 238 FVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G ++ ++D + ++ LE + ++ PTL A + Sbjct: 328 RKGIEGGAALGSLVDSRGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHSETYY 387 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNA-GDMPS 350 K S + YG +L TP V+ G + L + E + +P+ Sbjct: 388 VKI--SGERVAELKGITYGTMLRMTPRVIQLGDRPEVSLSLHIEDGSQKPNSSGLDGIPT 445 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 DT + G ++++ G+ +D++ + +P L IP LGALFR+ Sbjct: 446 ISRTVVDTIARVGHGQSLLIGGIYRDELSESLSKVPFLGDIPYLGALFRSKESQTRRQVR 505 Query: 411 FIAATPFLVKPVAMRDLSR 429 P L+ LS Sbjct: 506 LFIIEPRLIDDGIAHYLSL 524 >gi|308125809|ref|ZP_05777658.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus K5030] gi|308111516|gb|EFO49056.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio parahaemolyticus K5030] Length = 604 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 114/319 (35%), Gaps = 19/319 (5%) Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMV-SDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 ++ R + ++ + + V + ++ G ++ Sbjct: 194 VLSRVVGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRD 253 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGP---SK 228 Q +K++ L+ + Q ++V +I ++ + L+Q+G S Sbjct: 254 TQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDI 310 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSA 285 D V+ G S K +LD + + LE + + ++ PTL A Sbjct: 311 KTTGDVDNGDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEA 370 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPV 340 + K V T A + YG +L P ++ I L + E + Sbjct: 371 VLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKI 428 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 D+PS R + T + G ++++ G+ +D++ +PLL IP LGALFR+ Sbjct: 429 PDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRS 488 Query: 401 SRFNREETEIFIAATPFLV 419 + T P +V Sbjct: 489 NTNTTRRTVRMFIIEPRIV 507 >gi|302038138|ref|YP_003798460.1| putative general secretion pathway protein D [Candidatus Nitrospira defluvii] gi|300606202|emb|CBK42535.1| putative General secretion pathway protein D [Candidatus Nitrospira defluvii] Length = 765 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 122/334 (36%), Gaps = 35/334 (10%) Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA------VELSETFLSQSGRNQYANS 179 TL ++ + E D ++ + + + +++ +++ Sbjct: 235 TLYIISPNTKQKQEQYQDLMIRTFYLSSAKAKDMVALLKSMLDVKHIHGNEALNTIVIRD 294 Query: 180 SSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 +KV + N + +V V + EV R + + G + ++ F Sbjct: 295 QPEKVELAEKIIQANDREDSEVLFDVEVLEVNRTVDQTYGLSYPKQIGAALIPPGFTGAI 354 Query: 235 GGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G + ++ + L ++ T +TLA P + ++ + A Sbjct: 355 AGDIAQQFTYRNLASLGQDSYLFKLPTNVQLDFFKQVTDAKTLAAPKVRVLNNKKAEVNI 414 Query: 290 GGQHLY--------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 G + V +++ TS+ D GV L P + + L+++ E Sbjct: 415 GDKQPILLSTTNVLPGQAATGAVPTTSTVTSIEFRDTGVKLTVEPNIHLANELALKMKIE 474 Query: 336 VSEPVIGVNAGDMPSYR-----VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 V V P R A+T + + G TIVL GLL+++ ++ K IP L Sbjct: 475 VIRLGDVVLLQQSPPITQFKFGNRSAETMLNVRDGETIVLGGLLQEEDRRTKVTIPWLGD 534 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 IP LG L + + R TE+ + TP +V + + Sbjct: 535 IPFLGNLLSSFKTQRVTTEVILTITPHIVNSLRL 568 >gi|323189406|gb|EFZ74687.1| hypothetical protein ECRN5871_2294 [Escherichia coli RN587/1] Length = 512 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 114/262 (43%), Gaps = 29/262 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ L+I + Q+ + V+I +V + L+Q+G S T ++ + +F + + Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TA 315 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + S + + +F ++AL++ + + L++P++ ++ A + T S Sbjct: 316 QANISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346 S+ + G +L TP +L L ++ + Sbjct: 374 EKVASLESITSGTLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSSNQSNAQDASS 433 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P + + T L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 434 TLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493 Query: 407 ETEIFIAATPFLVKPVAMRDLS 428 FL+K ++ S Sbjct: 494 S-----VVRLFLIKATPIKSAS 510 >gi|328472347|gb|EGF43217.1| fimbrial assembly protein [Vibrio parahaemolyticus 10329] Length = 570 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 59/274 (21%), Positives = 108/274 (39%), Gaps = 38/274 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I + + ++G + T + + Sbjct: 297 REIIESLDIP-VKQVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 355 Query: 230 ---------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERAT 267 + + F V + + L AL++ + Sbjct: 356 YEGGGDGEGEEGGDGVGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQES 415 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P L + + A G + Y SSS+GATSVT + L TP + R Sbjct: 416 KAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNR 474 Query: 328 IGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L + P V+ G+ + ++ T V + +G T+VL G+ + I + + Sbjct: 475 LVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKV 534 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 PLL +P+LGALFR S N ++E+ I TP +V Sbjct: 535 PLLGDLPLLGALFRRSYENVGKSELLIFVTPKVV 568 >gi|262363857|gb|ACY60577.1| outer membrane secretin precursor [Yersinia pestis D106004] Length = 470 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 123/334 (36%), Gaps = 16/334 (4%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVE 162 + + D + + L+R ++D+ I+ V + + + + Q A Sbjct: 57 ASDRTIHYRDDEVAAP--GVATILQRVLSDATIQQVTVDNQRIPQAATRASAQAKVEADP 114 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 + + + +++++ L+ + + ++I ++ D L ++G + G Sbjct: 115 SLNAIIVRDSPERM--PMYQRLIHALDKPSAR-IEVALSIVDINADQLTELGVDWRV-GI 170 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTA 279 +G + G + + ++ ++D + ++ LE + + ++ PTL Sbjct: 171 RTGNNHQVVIKTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLT 230 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV 336 A Y + + YG +L TP VL+ G I L + E Sbjct: 231 QENAQAVID--HHETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIED 288 Query: 337 SEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + D +P+ DT + G ++++ G+ +D++ +PLL IP LG Sbjct: 289 GNQKPNSSGIDGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLG 348 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ALFR T P ++ L+ Sbjct: 349 ALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLAL 382 >gi|145284361|gb|ABP51942.1| AscC [Aeromonas veronii bv. sobria] Length = 617 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 56/307 (18%), Positives = 116/307 (37%), Gaps = 15/307 (4%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + L + ++D+ V+MV+ + Q +A + + + A Sbjct: 218 GVATILAKLLSDAG--VQMVNGEGSKAATATSGQAIVQADPSLNAVIVRDAPERMAMYG- 274 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K++ L+ + + ++I ++ + L Q+G + G +G ++ G Sbjct: 275 -KLIAALDKPAAR-IEVALSIIDINAEDLSQLGVDWRV-GIRTGSNQQVIIKTTGDRKGI 331 Query: 242 GGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ ++D + ++ LE + ++ PTL A + K Sbjct: 332 EGGAALGSLVDSKGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHSETYYVKI- 390 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV-SEPVIGVNAGDMPSYRVR 354 S + YG +L TP V+ G I L + E ++ A +P+ Sbjct: 391 -SGERVAELQGITYGTMLRMTPRVIQMGDRPEISLSLHIEDGNQKPNSAGADGIPTISRT 449 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 DT + G ++++ G+ +D++ + +P L IP LGALFR+ + Sbjct: 450 VVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRSKDTQTRRSVRLFII 509 Query: 415 TPFLVKP 421 P L+ Sbjct: 510 EPRLIDD 516 >gi|54294209|ref|YP_126624.1| type II protein secretion LspD [Legionella pneumophila str. Lens] gi|53754041|emb|CAH15514.1| type II protein secretion LspD [Legionella pneumophila str. Lens] Length = 791 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 24/251 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K V++ L+I Q+ ++ +AEV + +G + + P Sbjct: 490 KTVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKD-----------FR 537 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + F+ ++AL R L+ P++ + + A G Q T S Sbjct: 538 PGFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597 Query: 302 TGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMP 349 A T+ + + L+ P + I L+I + + P Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATSTTDNTTTP 657 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ Sbjct: 658 TFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRV 717 Query: 410 IFIAATPFLVK 420 + + P +++ Sbjct: 718 LMVFIKPIILR 728 >gi|297623561|ref|YP_003704995.1| type II and III secretion system protein [Truepera radiovictrix DSM 17093] gi|297164741|gb|ADI14452.1| type II and III secretion system protein [Truepera radiovictrix DSM 17093] Length = 560 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 7/230 (3%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 E Q+ ++V I EV + +++G + + F+ + G FV F + Sbjct: 338 RPERQINVQVRIQEVSANASERLGLNLTAAMDRFSTTL-FSGEGGLSFV-----FDAQRA 391 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + F+ +L E R + + +T ++ A+ +GG Y V G + Sbjct: 392 IAGFNLGAILDVYEEQGLSRRVDDSNVTVLNNGVATLQAGGTQ-YNYVRDEAGGVTRDEI 450 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 YGV++ FTP V + + L + V P + G + + RKA++ + L G T+VL Sbjct: 451 PYGVIVGFTPQVANNNSVILDLCARVDTPSLRDAEGRITEFLTRKANSRITLQPGQTVVL 510 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GLL++ + +P L IP++G LF + TE+ I T +++ Sbjct: 511 GGLLQNQVVASNRSVPGLGDIPVVGNLFSTNTATELNTELLIIVTANVLE 560 >gi|148358852|ref|YP_001250059.1| type II protein secretion LspD [Legionella pneumophila str. Corby] gi|296106898|ref|YP_003618598.1| type II protein secretion LspD [Legionella pneumophila 2300/99 Alcoy] gi|148280625|gb|ABQ54713.1| type II protein secretion LspD [Legionella pneumophila str. Corby] gi|295648799|gb|ADG24646.1| type II protein secretion LspD [Legionella pneumophila 2300/99 Alcoy] Length = 791 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 24/251 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K V++ L+I Q+ ++ +AEV + +G + + P Sbjct: 490 KTVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKD-----------FR 537 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + F+ ++AL R L+ P++ + + A G Q T S Sbjct: 538 PGFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597 Query: 302 TGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMP 349 A T+ + + L+ P + I L+I + + P Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTP 657 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ Sbjct: 658 TFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRV 717 Query: 410 IFIAATPFLVK 420 + + P +++ Sbjct: 718 LMVFIKPIILR 728 >gi|323153824|gb|EFZ40066.1| hypothetical protein ECEPECA14_4273 [Escherichia coli EPECa14] Length = 436 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 113/262 (43%), Gaps = 29/262 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ L+I + Q+ + V+I +V + L+Q+G S T ++ S +F + + Sbjct: 187 RQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGSIAFNSS------TA 239 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + S + + +F ++AL++ + + L++P++ ++ A + T S Sbjct: 240 QANLSSSVISNANNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 297 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346 S+ + G +L TP +L L ++ + Sbjct: 298 EKVASLESITSGTLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 357 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P + + T L +G +++L G ++D K+GIPLLS IP++G LF ++ + Sbjct: 358 ILPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGNLFSSTTKQKH 417 Query: 407 ETEIFIAATPFLVKPVAMRDLS 428 FL+K ++ S Sbjct: 418 S-----VVRLFLIKATPIKSAS 434 >gi|182412463|ref|YP_001817529.1| type II and III secretion system protein [Opitutus terrae PB90-1] gi|177839677|gb|ACB73929.1| type II and III secretion system protein [Opitutus terrae PB90-1] Length = 596 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 86/220 (39%), Gaps = 16/220 (7%) Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS----VKGVLDRFSFETVLHALERATAI 269 S+T +++ + + A + S G + + V F V+ AL T Sbjct: 319 TIGSSLTNTTNSGNSTTANETLNLLNSLTGTTTNERALNAVFTADQFGLVISALNELTTA 378 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLS 324 + ++ PT+ ++ A G ++ + S T G++L TP V + Sbjct: 379 KVVSNPTVVTLNNTEAFINIGKEYPIPNYTYNEQRGSFEVAGFTYKPIGIILKVTPQVNA 438 Query: 325 PGRIGLRIQTEVSEPVI-------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 G I L I+ EVS G +P + +KA T + L G T+ + GL+ Sbjct: 439 RGFIKLMIEPEVSSFNDADSVNFGGATGARIPVIQTKKARTQISLKDGFTMGIGGLIDSQ 498 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + +P+L IP+LG LF + + + I T Sbjct: 499 VSNGSTKVPVLGSIPVLGRLFSSKTQSTATRNLLIFLTAK 538 >gi|52841551|ref|YP_095350.1| type II protein secretion LspD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628662|gb|AAU27403.1| type II protein secretion LspD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 791 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 24/251 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K V++ L+I Q+ ++ +AEV + +G + + P Sbjct: 490 KTVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKD-----------FR 537 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + F+ ++AL R L+ P++ + + A G Q T S Sbjct: 538 PGFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597 Query: 302 TGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMP 349 A T+ + + L+ P + I L+I + + P Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTP 657 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ Sbjct: 658 TFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRV 717 Query: 410 IFIAATPFLVK 420 + + P +++ Sbjct: 718 LMVFIKPIILR 728 >gi|222055737|ref|YP_002538099.1| type II and III secretion system protein [Geobacter sp. FRC-32] gi|221565026|gb|ACM20998.1| type II and III secretion system protein [Geobacter sp. FRC-32] Length = 805 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 72/382 (18%), Positives = 149/382 (39%), Gaps = 34/382 (8%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + T+ ++ K+ + + ++ L + D +R + I V Sbjct: 244 KVLNENTIIVYTKSPEKTK-----QYEELIVQTFYLNKLDAKKAVNLIRTMLQVKKIYVN 298 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-QVTL 198 + +V+ I+ +Q+ ++ ++ ++ +K +A V+ Sbjct: 299 EEMNALVIRDTPEVIEVAQKILDANDVPDAEVVLEVEVLEFTKSNAESFGLALSRYAVST 358 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 L + Q + T S++ + + + + F G + + F+F Sbjct: 359 AAAKVGAS-TFLSDVLVQPTSTSSTTTSTTTSSDNLLSLFRWRGFNGFLTVPNATFNFGK 417 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGV 314 L TLA P + + + A F G + T S++ + +V D GV Sbjct: 418 TLS------NSETLANPKIRVKNREKAKFNVGTRVPITTTSTNGTSIGVNVNVQYVDVGV 471 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTI 368 ++ PT+ + +++ EVS + GD + + R DT + L G T Sbjct: 472 KVNAEPTIQLNNEVSIKLSLEVSTILSKDKIGDASSLTTVVTIGTRNLDTVLSLKDGETS 531 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 ++ GL++DD + K+ + +L IPI+G L N+ ++E+ +A TP +V+ V + Sbjct: 532 IIGGLIQDDKSKSKQKVMVLGDIPIIGPLLSNNDNTNRKSELVLAITPRVVRSVTV---- 587 Query: 429 RPDDHYSVEDDAKAFFFNRVNK 450 E DA F+ R ++ Sbjct: 588 -------PEGDAAGFWSGREDE 602 >gi|254229573|ref|ZP_04922986.1| Type II secretory pathway, component PulD [Vibrio sp. Ex25] gi|151937946|gb|EDN56791.1| Type II secretory pathway, component PulD [Vibrio sp. Ex25] Length = 458 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 14/233 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + QV ++ I E +++G + S +G F + + Sbjct: 236 RPQKQVFIEAVITETELGDSQEVGVNMDLALSEAG--------FVSQPTAIKKAVDNLLF 287 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TS 306 + F ++ A+ + + L+ P + + + T G + T S T Sbjct: 288 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 347 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + D GV L P V+ + L+I + A D+ + R T V++ Sbjct: 348 IERKDVGVSLEVVPHVIGD-HVVLQIMQKSDSVTDSSIASDIIT-NTRTLQTVVKVKDRQ 405 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 TI L GL+ + + G+P+L +P+LGALFR+ + N + E+ + ++ Sbjct: 406 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 458 >gi|54297230|ref|YP_123599.1| type II protein secretion LspD [Legionella pneumophila str. Paris] gi|53751015|emb|CAH12426.1| type II protein secretion LspD [Legionella pneumophila str. Paris] Length = 791 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 24/251 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K V++ L+I Q+ ++ +AEV + +G + + P Sbjct: 490 KTVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKD-----------FR 537 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + F+ ++AL R L+ P++ + + A G Q T S Sbjct: 538 PGFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597 Query: 302 TGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMP 349 A T+ + + L+ P + I L+I + + P Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTP 657 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ Sbjct: 658 TFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRV 717 Query: 410 IFIAATPFLVK 420 + + P +++ Sbjct: 718 LMVFIKPIILR 728 >gi|283786644|ref|YP_003366509.1| T3SS structural protein EscC [Citrobacter rodentium ICC168] gi|15723915|gb|AAL06362.1|AF311901_14 EscC [Citrobacter rodentium] gi|282950098|emb|CBG89732.1| T3SS structural protein EscC [Citrobacter rodentium ICC168] Length = 512 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 115/262 (43%), Gaps = 29/262 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ L+I + Q+ + V+I +V + L+Q+G S T ++ S +F + + Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQSSIAFNSS------AA 315 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + S + + +F ++AL++ + + L++P++ ++ A + T S Sbjct: 316 QANISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346 S+ + G +L TP +L L V++ I Sbjct: 374 EKVASLESITSGTLLRVTPRILDDTSNSLTGKRRERVRLLLDIQDGNQSVNQSNIQNAGS 433 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P + + T L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 434 LLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493 Query: 407 ETEIFIAATPFLVKPVAMRDLS 428 FL+K +R S Sbjct: 494 S-----VVRLFLIKATPIRSAS 510 >gi|170766764|ref|ZP_02901217.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia albertii TW07627] gi|170124202|gb|EDS93133.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia albertii TW07627] gi|315617521|gb|EFU98127.1| conserved hypothetical protein [Escherichia coli 3431] Length = 512 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 118/262 (45%), Gaps = 29/262 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ L+I + Q+ + V+I +V + L+Q+G S T ++ + +F + + Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------AA 315 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + S + + +F ++AL++ + + L++P++ ++ A + T S Sbjct: 316 QANISSSVISNANNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG------------RIGLRIQ---TEVSEPVIGVNAG 346 S+ + G +L TP +L R+ L IQ S+ I Sbjct: 374 EKVASLESITSGTLLRVTPRILDDTPNSLTGKRRERVRLLLDIQDGNQSTSQSNIQDTGS 433 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P + + T L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 434 LLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493 Query: 407 ETEIFIAATPFLVKPVAMRDLS 428 FL+K ++ S Sbjct: 494 S-----VVRLFLIKATPIKSAS 510 >gi|297565761|ref|YP_003684733.1| type II and III secretion system protein [Meiothermus silvanus DSM 9946] gi|296850210|gb|ADH63225.1| type II and III secretion system protein [Meiothermus silvanus DSM 9946] Length = 771 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 26/251 (10%) Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 L++ + QV L+V I V +++++G + S G + + G + F Sbjct: 522 QLDVP-KQQVQLQVRIQAVNSSVIRELGLKWETI--SGGNLVASILEKGLSLI-----FD 573 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG-------------QSASFTSGGQH 293 L + L+ALE R +++ L SG A +GG+ Sbjct: 574 ATRSLASLNIRATLNALESQNLSRRISDANLLVESGYGNDTSDLRQANAAGAELKAGGKL 633 Query: 294 LYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 L T ++ST G SV D G+ L P + G+I L + T+ E V A D Sbjct: 634 LIVTTTASTSQGGGQQSVREFDVGLTLRLRPRITPDGQIILEVYTQTGEQ-PQVLAPDRT 692 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 V ++ + G T+V+ GL++ + +PLL IPI+GALF+ + ++ E Sbjct: 693 FLPVNSTLSSFRIKDGQTVVMGGLVQTTTTNTENKVPLLGDIPIIGALFKQTTAENKQEE 752 Query: 410 IFIAATPFLVK 420 + + T +VK Sbjct: 753 LIVIITANIVK 763 >gi|225163988|ref|ZP_03726276.1| type II and III secretion system protein [Opitutaceae bacterium TAV2] gi|224801402|gb|EEG19710.1| type II and III secretion system protein [Opitutaceae bacterium TAV2] Length = 928 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 65/347 (18%), Positives = 123/347 (35%), Gaps = 86/347 (24%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLKVTIAEVRRDILKQI 213 Q + A + + +++Q+ N ++V N+L QV ++ +V+ L ++ Sbjct: 552 QGASLAYDGTAIYVTQTTANL------ERVRNILARYNDVRQVEIEAKFMDVQEGSLDEL 605 Query: 214 GFQH---SITGSSSGPSKSFAADFGGKF-------------------------------- 238 G S +G + + + G F Sbjct: 606 GISWMVNSFSGKFNAGTGTVVRSLSGAFGVTGASGGGGQIVTPFGTVDVPLSPPATPGTA 665 Query: 239 ---VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + G S+ GV+ F + A+ + L+ P +T +SG A + Y Sbjct: 666 DTGSAVGNIASITGVMGNFDVAAQIRAIAQKQGSDLLSAPKVTVLSGNPAFMVVAQELRY 725 Query: 296 KTVSSSTGAT----------------------SVTTHDYGVVLHFTPTVLSPG-RIGLRI 332 T + T + GV L TPTV I L + Sbjct: 726 PQSYGETESEVGTSSGNGGGAAGVTITPGTPEEFVTRNVGVELRVTPTVEDDNYSITLDL 785 Query: 333 QTEV------------SEPVIGVNAGDMPS------YRVRKADTTVELPSGGTIVLAGLL 374 +V S + G +PS + R+ T V + G T+V+ GL Sbjct: 786 NPKVTEFEGFIEYGGSSVAISGNTTVTLPSGYYQPIFSTREVTTKVTVWDGATLVMGGLT 845 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +++++++ + +P+L IP LG LF++ + ++ + + T LV P Sbjct: 846 REEVKRVNDKVPILGDIPFLGRLFKSKGESSQKRNLLVFVTANLVSP 892 >gi|307610026|emb|CBW99559.1| type II protein secretion LspD [Legionella pneumophila 130b] Length = 791 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 24/251 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K V++ L+I Q+ ++ +AEV + +G + + P Sbjct: 490 KTVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKD-----------FR 537 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + F+ ++AL R L+ P++ + + A G Q T S Sbjct: 538 PGFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 597 Query: 302 TGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMP 349 A T+ + + L+ P + I L+I + + P Sbjct: 598 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTP 657 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ Sbjct: 658 TFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRV 717 Query: 410 IFIAATPFLVK 420 + + P +++ Sbjct: 718 LMVFIKPIILR 728 >gi|145301440|ref|YP_001144279.1| AscC protein [Aeromonas salmonicida subsp. salmonicida A449] gi|66947980|emb|CAE83117.1| AscC protein [Aeromonas salmonicida subsp. salmonicida] gi|88698168|gb|ABD48952.1| AscC [Aeromonas salmonicida subsp. salmonicida A449] gi|142856322|gb|ABO92531.1| AscC protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 617 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 56/307 (18%), Positives = 116/307 (37%), Gaps = 15/307 (4%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + L + ++D+ V+MV+ + Q +A + + + A Sbjct: 218 GVATILAKLLSDAG--VQMVNGEGNKAATATSGQAIVQADPSLNAVIVRDAPERMAMYG- 274 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K++ L+ + + ++I ++ + L Q+G + G +G ++ G Sbjct: 275 -KLIAALDKPAAR-IEVALSIIDINAEDLSQLGVDWRV-GIRTGSNQQVIIKTTGDRKGI 331 Query: 242 GGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G ++ ++D + ++ LE + ++ PTL A + K Sbjct: 332 EGGAALGSLVDSKGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHSETYYVKI- 390 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEV-SEPVIGVNAGDMPSYRVR 354 S + YG +L TP V+ G I L + E ++ A +P+ Sbjct: 391 -SGERVAELQGITYGTMLRMTPRVIQMGDRPEISLSLHIEDGNQKPNSAGADGIPTISRT 449 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 DT + G ++++ G+ +D++ + +P L IP LGALFR+ + Sbjct: 450 VVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRSKDTQTRRSVRLFII 509 Query: 415 TPFLVKP 421 P L+ Sbjct: 510 EPRLIDD 516 >gi|269968410|ref|ZP_06182426.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269826958|gb|EEZ81276.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 450 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 14/233 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + QV ++ I E +++G + S +G F + + Sbjct: 228 RPQKQVFIEAVITETELGDSQEVGVNMDLALSEAG--------FVSQPTAIKKAVDNLLF 279 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TS 306 + F ++ A+ + + L+ P + + + T G + T S T Sbjct: 280 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 339 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + D GV L P V+ + L+I + A D+ + R T V++ Sbjct: 340 IERKDVGVSLEVVPHVIGD-HVVLQIMQKSDSVTDSSIASDIIT-NTRTLQTVVKVKDRQ 397 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 TI L GL+ + + G+P+L +P+LGALFR+ + N + E+ + ++ Sbjct: 398 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 450 >gi|225874165|ref|YP_002755624.1| transporter, outer bacterial membrane secretin (Secretin) family [Acidobacterium capsulatum ATCC 51196] gi|225794395|gb|ACO34485.1| transporter, outer bacterial membrane secretin (Secretin) family [Acidobacterium capsulatum ATCC 51196] Length = 583 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 123/332 (37%), Gaps = 51/332 (15%) Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 ++ D ++ LR + I +DT+V+ G + L++ ++ Sbjct: 254 NVSQASDFTGIQTALRNVFQSARIFGIESNDTIVMLGTPDE-------LRLAKMLIASLD 306 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 + +V + VT+ EV RD +++IG P S Sbjct: 307 EPK------------------PEVLVDVTVMEVSRDKMREIGLS---------PPTSLTV 339 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + G E + L + + L P L A++G+ AS G + Sbjct: 340 NSGSSQTLE--QIGHTSAYSITIGQAAADFLLTDSNTQILQNPRLRALNGEQASLKLGER 397 Query: 293 HLYKTVSSS--TGATS------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIG 342 T S + TG+TS D GV + TP + + L++ +VS Sbjct: 398 LPVATGSYTYATGSTSAAAETQFQYLDVGVNIDMTPQIHLDHTVTLKLGVDVSSENGTED 457 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + P KA V L +G + +LAGLLK ++ Q G P +IP + LF + Sbjct: 458 LEGVEEPIISQEKAQQIVRLKNGESTILAGLLKKEVSQTVSGWPGFGEIPFMKYLFTTQK 517 Query: 403 FNREETEIFIAATPFLVK-----PVAMRDLSR 429 E+ TP +++ P+ MR++ Sbjct: 518 HEVTSDELVFMITPHIIRSPQVDPLTMREIDT 549 >gi|34556961|ref|NP_906776.1| putative type II secretion system D [Wolinella succinogenes DSM 1740] gi|34482676|emb|CAE09676.1| PUTATIVE TYPE II SECRETION SYSTEM D [Wolinella succinogenes] Length = 731 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 65/355 (18%), Positives = 120/355 (33%), Gaps = 62/355 (17%) Query: 146 VLHGMVRTIQDSQ----RAVELSETFLSQSGRNQYANSSSK-----KVMNLLNIAGEDQV 196 +L G + + Q Q ++ + +G +S + + + L+ + QV Sbjct: 364 ILGGSLESSQAQQARTTKSESGAVIVNRGAGLVTVTGTSPQVDRVAQYIEELHARLQSQV 423 Query: 197 TLKVTIAEVRRDILKQIGFQHS-------------------------------ITGSSSG 225 + V+I VR + G + IT SG Sbjct: 424 MIDVSILTVRHSKGQTTGVDWNQLYNLQNIAIHTKSTTTSNSSGSGSTSDTTSITTGPSG 483 Query: 226 PSKSFAADFGGKFVSEGG----DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S G + G ++V S V+ L+ + +++ P + ++ Sbjct: 484 TSIQQGTASGASVLGVGSHSQVGYAVNIFSQGVSLTRVIEFLQSYGDVTSVSNPKVLTLN 543 Query: 282 GQSASFTSGGQHLYKTVS-----------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 Q A + G Y+ + ++ T + GV+L TP+V I L Sbjct: 544 NQPAMISVGNIIRYRKSTVFQTSGSNTGTNTNTDTEYPSVFAGVLLDITPSVF-NDEIML 602 Query: 331 RIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +I +++ P+ + + V + G IVL GL+ Q+ + Sbjct: 603 KINPSITQTKSTDVENASTALETPPNLSTNQLSSLVRIKDGEKIVLGGLISKSNQKKENK 662 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 +PLL +P+LG LF + E+ I TP ++K L E D Sbjct: 663 VPLLGDVPVLGYLFSYNADVESTDEMVIVITPHIIKGSQGPSLQELGYRLMGEKD 717 >gi|150021613|ref|YP_001306967.1| type II and III secretion system protein [Thermosipho melanesiensis BI429] gi|149794134|gb|ABR31582.1| type II and III secretion system protein [Thermosipho melanesiensis BI429] Length = 1302 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 56/349 (16%), Positives = 129/349 (36%), Gaps = 42/349 (12%) Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137 ++ V +Y+F +L K + + +++ ++ + + +S Sbjct: 990 NIEVKKEDGIYVFD--------LLTSEGTKTINTFTFSVPKNVEKIQKLIEFYGGNSF-- 1039 Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 V+ + V+ G+ + + E +L+ Sbjct: 1040 VDSAAGVVIATGI--DAKIAGEIRNYIEKYLNSKLA-----------------------L 1074 Query: 198 LKVTIA--EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-FSVKGVLDRF 254 ++V + E + +G S G+ S G + + + G ++ Sbjct: 1075 IEVRVVDEEFTNSLDLTLGELTSNIGNLSKDGFDITLTLGEMSLEKIVEKLLSVGTVNEL 1134 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 + + + LA P + A SG+ AS G + ++++ + + GV Sbjct: 1135 TLKLNGKINATDKDTKILASPNVVAKSGEKASILIGDKIPI-VLTTAENTQEIKYIESGV 1193 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 L TP V + I L + +VS V V +P R R+ ++ + L T+++ Sbjct: 1194 TLEITPFVNADNTIDLELNIKVSSFDWDVKNVYGLTLPLERTREFNSKISLKENETLIIG 1253 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GL +++ + + +P+L +PI+G F+ + + + I I + +V+ Sbjct: 1254 GLTREENSKTESKVPILGDLPIIGKFFKTEKNDLVKRNIIILISAKVVE 1302 >gi|215488986|ref|YP_002331417.1| T3SS structure protein EscC [Escherichia coli O127:H6 str. E2348/69] gi|312967940|ref|ZP_07782152.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|54311608|emb|CAG17523.1| EscC protein [Escherichia coli] gi|215267058|emb|CAS11503.1| T3SS structure protein EscC [Escherichia coli O127:H6 str. E2348/69] gi|221361489|emb|CAX18660.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361550|emb|CAX18740.1| Type III secretion system, LEE associated [Escherichia coli] gi|312287501|gb|EFR15409.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|320193805|gb|EFW68438.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli WV_060327] gi|320201526|gb|EFW76105.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli EC4100B] Length = 512 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 114/262 (43%), Gaps = 29/262 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ L+I + Q+ + V+I +V + L+Q+G S T ++ + +F + + Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TA 315 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + S + + +F ++AL++ + + L++P++ ++ A + T S Sbjct: 316 QANISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346 S+ + G +L TP +L L ++ + Sbjct: 374 EKVASLESITSGTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 433 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P + + T L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 434 TLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493 Query: 407 ETEIFIAATPFLVKPVAMRDLS 428 FL+K ++ S Sbjct: 494 S-----VVRLFLIKATPIKSAS 510 >gi|15804236|ref|NP_290275.1| hypothetical protein Z5126 [Escherichia coli O157:H7 EDL933] gi|15833829|ref|NP_312602.1| EscC [Escherichia coli O157:H7 str. Sakai] gi|168748648|ref|ZP_02773670.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4113] gi|168753525|ref|ZP_02778532.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4401] gi|168759822|ref|ZP_02784829.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4501] gi|168766122|ref|ZP_02791129.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4486] gi|168772329|ref|ZP_02797336.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4196] gi|168779857|ref|ZP_02804864.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4076] gi|168785590|ref|ZP_02810597.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC869] gi|168798671|ref|ZP_02823678.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC508] gi|195936258|ref|ZP_03081640.1| EscC [Escherichia coli O157:H7 str. EC4024] gi|208808738|ref|ZP_03251075.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4206] gi|208812386|ref|ZP_03253715.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4045] gi|208819063|ref|ZP_03259383.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4042] gi|209395836|ref|YP_002273173.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4115] gi|217325945|ref|ZP_03442029.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. TW14588] gi|254795650|ref|YP_003080487.1| type III needle complex subunit [Escherichia coli O157:H7 str. TW14359] gi|261225794|ref|ZP_05940075.1| type III needle complex subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261258839|ref|ZP_05951372.1| type III needle complex subunit [Escherichia coli O157:H7 str. FRIK966] gi|291285063|ref|YP_003501881.1| escC [Escherichia coli O55:H7 str. CB9615] gi|12518466|gb|AAG58839.1|AE005596_9 escC [Escherichia coli O157:H7 str. EDL933] gi|3414909|gb|AAC31520.1| L0041 [Escherichia coli] gi|13364050|dbj|BAB37998.1| type III secretion system EscC protein [Escherichia coli O157:H7 str. Sakai] gi|187771452|gb|EDU35296.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4196] gi|188016923|gb|EDU55045.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4113] gi|189002416|gb|EDU71402.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4076] gi|189358814|gb|EDU77233.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4401] gi|189364509|gb|EDU82928.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4486] gi|189369868|gb|EDU88284.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4501] gi|189374516|gb|EDU92932.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC869] gi|189378854|gb|EDU97270.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC508] gi|195957526|gb|ACG59637.1| type III secretion system protein EscC [Escherichia coli O157:H7] gi|195957585|gb|ACG59695.1| type III secretion system protein EscC [Escherichia coli] gi|195957642|gb|ACG59751.1| EscC [Escherichia coli] gi|208728539|gb|EDZ78140.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4206] gi|208733663|gb|EDZ82350.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4045] gi|208739186|gb|EDZ86868.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4042] gi|209157236|gb|ACI34669.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4115] gi|217322166|gb|EEC30590.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. TW14588] gi|254595050|gb|ACT74411.1| type III needle complex subunit [Escherichia coli O157:H7 str. TW14359] gi|255348323|gb|ACU09465.1| type III secretion outer membrane pore YscC/HrcC family [Escherichia coli] gi|290764936|gb|ADD58897.1| escC [Escherichia coli O55:H7 str. CB9615] gi|320191251|gb|EFW65901.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC1212] gi|320639365|gb|EFX08980.1| outer membrane secretin SsaC [Escherichia coli O157:H7 str. G5101] gi|320644809|gb|EFX13845.1| outer membrane secretin SsaC [Escherichia coli O157:H- str. 493-89] gi|320650073|gb|EFX18569.1| outer membrane secretin SsaC [Escherichia coli O157:H- str. H 2687] gi|320655420|gb|EFX23355.1| outer membrane secretin SsaC [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661047|gb|EFX28483.1| outer membrane secretin SsaC [Escherichia coli O55:H7 str. USDA 5905] gi|320666172|gb|EFX33178.1| outer membrane secretin SsaC [Escherichia coli O157:H7 str. LSU-61] gi|326337301|gb|EGD61136.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. 1044] gi|326341675|gb|EGD65464.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. 1125] Length = 512 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 114/262 (43%), Gaps = 29/262 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ L+I + Q+ + V+I +V + L+Q+G S T ++ + +F + + Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TA 315 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + S + + +F ++AL++ + + L++P++ ++ A + T S Sbjct: 316 QANISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346 S+ + G +L TP +L L ++ + Sbjct: 374 EKVASLESITSGTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 433 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P + + T L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 434 TLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493 Query: 407 ETEIFIAATPFLVKPVAMRDLS 428 FL+K ++ S Sbjct: 494 S-----VVRLFLIKATPIKSAS 510 >gi|254442891|ref|ZP_05056367.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] gi|198257199|gb|EDY81507.1| Bacterial type II and III secretion system protein [Verrucomicrobiae bacterium DG1235] Length = 842 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 132/374 (35%), Gaps = 94/374 (25%) Query: 142 SDTVVLHGMVRTIQDSQRAVELSE-TFLSQSGRNQYANSSS----------KKVMNLLNI 190 D V G+ Q + ++ + F++ G + SS +++ N+LN Sbjct: 435 GDRVRDQGVATDAQTIRNFLQQAGVDFVATEGSTLAYDGSSMIVTQTRRNIERIRNILNR 494 Query: 191 -AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF------------------- 230 QV ++ E++ L ++GF I S + Sbjct: 495 YTDVKQVEIEAKFLEIQEGSLDELGFDWVIDERGSPNDPQYETGEVYRSSMRTLAQAAAP 554 Query: 231 ------------------AADFGGKFVSEGGD---FSVKGVLDRFSFETVLHALERATAI 269 A D G + G +V G ++ + + AL + + Sbjct: 555 SSVSSSILVDGEVIDNIDAPDLPGSNLLGAGAVPFTNVIGNINSVNLNVAIRALSQQSGS 614 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATS------------------- 306 L+ P +T +SG A + Y T S T G+TS Sbjct: 615 DLLSAPKVTVLSGNEAKINVSQEFRYPTRYSDTESDVGSTSGSLTGGSAGVTITPGTPED 674 Query: 307 VTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSE---------PVIGVNAGDM-------- 348 T + GV L TP V I L + V+E P I ++ G Sbjct: 675 FVTRNVGVELAVTPIVEEDDYSITLDLNPRVTEFEGFVEYGGPSIAISGGRTVKTPSGFY 734 Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P + VR+ +T V + G T+V+ G+ ++D+ + + IP L IP +G LFR+ + + Sbjct: 735 QPIFAVREVETKVTIWDGATVVMGGMTREDVVTVNDKIPFLGDIPFVGRLFRSEGESSAK 794 Query: 408 TEIFIAATPFLVKP 421 + I T LV P Sbjct: 795 RNLLIFVTANLVSP 808 >gi|260869693|ref|YP_003236095.1| T3SS structure protein EscC [Escherichia coli O111:H- str. 11128] gi|221361432|emb|CAX18585.1| Type III secretion system, LEE associated [Escherichia coli] gi|257766049|dbj|BAI37544.1| T3SS structure protein EscC [Escherichia coli O111:H- str. 11128] gi|323178902|gb|EFZ64478.1| hypothetical protein ECOK1180_2636 [Escherichia coli 1180] Length = 512 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 114/262 (43%), Gaps = 29/262 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ L+I + Q+ + V+I +V + L+Q+G S T ++ + +F + + Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TA 315 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + S + + +F ++AL++ + + L++P++ ++ A + T S Sbjct: 316 QANISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346 S+ + G +L TP +L L ++ + Sbjct: 374 EKVASLESITSGTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 433 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P + + T L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 434 TLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493 Query: 407 ETEIFIAATPFLVKPVAMRDLS 428 FL+K ++ S Sbjct: 494 S-----VVRLFLIKATPIKSAS 510 >gi|312963506|ref|ZP_07777988.1| general secretion pathway protein D [Pseudomonas fluorescens WH6] gi|311282312|gb|EFQ60911.1| general secretion pathway protein D [Pseudomonas fluorescens WH6] Length = 641 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 114/255 (44%), Gaps = 10/255 (3%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGK 237 S+ +K++ ++IA + +VT+ + + EV + +G Q+ + G S G + A G Sbjct: 313 SAVEKLVEAIDIA-QSEVTIDIQVLEVSLNDELNLGIQYPESVGLSVGNLANVPAGLAGI 371 Query: 238 FVSE-GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +S G +LD S ++ L+R+ TLA P + + + A+ G + Sbjct: 372 PLSALRGINGDNILLDAGSTSARINMLQRSGNTVTLANPRVRVRNREEAAVNIGDKVPMV 431 Query: 297 --TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPS 350 T ++ +SVT D G+ + P + + L + E+S N Sbjct: 432 TTTTANDITTSSVTYQDVGLQITVKPNISLSDEVNLELNVEMSHITKRIPASENVQATFE 491 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETE 409 R T + + T +++GL++ G+P LS+IP +G LF ++ +++TE Sbjct: 492 LGSRSTKTLLTARNNETQIVSGLIRTADVDEGAGLPWLSQIPWIGKKLFGTNQSTQQKTE 551 Query: 410 IFIAATPFLVKPVAM 424 I + TP + + + + Sbjct: 552 IILLLTPRIERNLDL 566 >gi|260221518|emb|CBA30162.1| hypothetical protein Csp_C22170 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 520 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 122/365 (33%), Gaps = 53/365 (14%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 + ++V +G R++ S +A L+ + + R K + + E QV Sbjct: 164 ELTGAIKSLVGNGEGRSVVASPQAGILAVRAMPEELRQ------VDKFLKATQASVERQV 217 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---GDFSVKGV--- 250 L+ + EV Q G + + G + G ++ G Sbjct: 218 MLEAKVVEVELRDGYQSGVNWGAFNNDGSTQVAAGVIGSGVTSTNAFVQGTTTINGAVAF 277 Query: 251 -------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 L F VL LE ++TL+ P + ++ Q A G + T Sbjct: 278 PSVATGGGLFGLALATSQFGAVLGFLETQGDVQTLSSPRVATLNNQKAVLKVGTDEFFVT 337 Query: 298 ----------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 +S+ ++T G+ L TP + + L + ++ Sbjct: 338 NVSGGTNSSSGTSSSTTTSTLPTVTLTPFFSGISLDVTPQIDDGVNVTLHVHPSLTTVTE 397 Query: 342 GVNAGDM----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 D+ S V + DT V + G + + GL++ + + GIP + + Sbjct: 398 KSKQIDLGSAGNFKLPLASSAVNETDTLVRIQDGSIVAIGGLMQLESSRNASGIPGTTSM 457 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P LGALF N + E+ + P +++ D D RV ++ Sbjct: 458 PGLGALFGNRATQGRKKEVIVLIKPTIIR--TAADWEAQGRRARAAIDDMDATRARVIQL 515 Query: 452 YGPKE 456 GP + Sbjct: 516 DGPAK 520 >gi|84785906|gb|ABC62092.1| secretion and cellular translocation protein C [Chlamydophila psittaci] Length = 672 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 63/332 (18%), Positives = 117/332 (35%), Gaps = 54/332 (16%) Query: 178 NSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 ++ KV++LLN QV ++V I E + G Q G G + Sbjct: 328 QANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLS 387 Query: 236 GKFVSEGGDFSVK--------------------------------GVLDR---------F 254 ++ +V G++ Sbjct: 388 NTGLANPAKSTVPPAKPSTGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFL 447 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTT 309 + +L AL++ + P + A Q ASF G ++T S+ T ++ Sbjct: 448 TLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEY 507 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 D GV L TV + L+I+ +SE + P A T +++P G +V Sbjct: 508 EDIGVNLVVASTVAPNNVVTLQIEQTISE-LHSAQGTLTPVTDKTYAATRLQVPDGCFLV 566 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 ++G ++D ++ G+PLL+ IP++ LF + R++ + P ++ Sbjct: 567 MSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNTMMFIKPKVISSFEEGTKLT 626 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + Y +A N + P+ A E + Sbjct: 627 NKEGYRYNWEA-----NEGSMQVAPRHAPECQ 653 >gi|238793311|ref|ZP_04636937.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia intermedia ATCC 29909] gi|238727280|gb|EEQ18808.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia intermedia ATCC 29909] Length = 486 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 98/237 (41%), Gaps = 15/237 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q+ + VTI +V + Q+G S + S G SF ++ G D + D Sbjct: 258 PVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSNSG----KNSADGFSTVIGD 313 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +F L+AL++ + R L+ P++ ++ A + T + + Sbjct: 314 TGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLD--KNVTFYTKLQGDKVAKLESITS 371 Query: 313 GVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368 G +L TP ++ + L + + + +++ + +P + T L G ++ Sbjct: 372 GSLLRVTPRMIDADGVKEVLLNLNIQDGQQQAAISSSEPLPEIQNSDISTQATLRVGQSL 431 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +L G ++D + + IPLL IP+LG LFR++ FL+K V + Sbjct: 432 LLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTDKQSHS-----VVRLFLIKAVPVN 483 >gi|31742526|gb|AAK35045.2|AF330136_1 type II protein secretion LspD [Legionella pneumophila 130b] Length = 730 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 24/251 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K V++ L+I Q+ ++ +AEV + +G + + P Sbjct: 429 KTVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKD-----------FR 476 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + F+ ++AL R L+ P++ + + A G Q T S Sbjct: 477 PGFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYP 536 Query: 302 TGA---------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMP 349 A T+ + + L+ P + I L+I + + P Sbjct: 537 NNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTP 596 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 ++ + T+V + SG +VL GL++D I +P+L IP +G LF+ + NR++ Sbjct: 597 TFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRV 656 Query: 410 IFIAATPFLVK 420 + + P +++ Sbjct: 657 LMVFIKPIILR 667 >gi|255507170|ref|ZP_05382809.1| general secretion pathway protein D [Chlamydia trachomatis D(s)2923] gi|296435178|gb|ADH17356.1| general secretion pathway protein D [Chlamydia trachomatis E/150] gi|296438898|gb|ADH21051.1| general secretion pathway protein D [Chlamydia trachomatis E/11023] Length = 760 Score = 146 bits (369), Expect = 7e-33, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D + + ++ + V G + + S+T + A Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234 K ++ L++ + V ++V + E + ++ G G + S+A+ Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +F+ +GG KG++ + F L +R A P++ ++ A + Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687 Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465 + TP ++ P + + + F V K+A E + G+ Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747 Query: 466 KGAIG 470 G+ G Sbjct: 748 SGSRG 752 >gi|289525617|emb|CBJ15095.1| general secretion pathway protein D [Chlamydia trachomatis Sweden2] Length = 760 Score = 146 bits (369), Expect = 7e-33, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D + + ++ + V G + + S+T + A Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234 K ++ L++ + V ++V + E + ++ G G + S+A+ Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +F+ +GG KG++ + F L +R A P++ ++ A + Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687 Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465 + TP ++ P + + + F V K+A E + G+ Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747 Query: 466 KGAIG 470 G+ G Sbjct: 748 SGSRG 752 >gi|237803001|ref|YP_002888195.1| general secretion pathway protein D [Chlamydia trachomatis B/Jali20/OT] gi|231274235|emb|CAX11029.1| general secretion pathway protein D [Chlamydia trachomatis B/Jali20/OT] Length = 760 Score = 146 bits (369), Expect = 7e-33, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D + + ++ + V G + + S+T + A Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234 K ++ L++ + V ++V + E + ++ G G + S+A+ Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +F+ +GG KG++ + F L +R A P++ ++ A + Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687 Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465 + TP ++ P + + + F V K+A E + G+ Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747 Query: 466 KGAIG 470 G+ G Sbjct: 748 SGSRG 752 >gi|255317692|ref|ZP_05358938.1| general secretion pathway protein D [Chlamydia trachomatis 6276s] Length = 760 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D + + ++ + V G + + S+T + A Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234 K ++ L++ + V ++V + E + ++ G G + S+A+ Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +F+ +GG KG++ + F L +R A P++ ++ A + Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687 Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465 + TP ++ P + + + F V K+A E + G+ Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747 Query: 466 KGAIG 470 G+ G Sbjct: 748 SGSRG 752 >gi|76789309|ref|YP_328395.1| general secretion pathway protein D [Chlamydia trachomatis A/HAR-13] gi|76167839|gb|AAX50847.1| general secretion pathway protein D [Chlamydia trachomatis A/HAR-13] Length = 760 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D + + ++ + V G + + S+T + A Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234 K ++ L++ + V ++V + E + ++ G G + S+A+ Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +F+ +GG KG++ + F L +R A P++ ++ A + Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687 Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465 + TP ++ P + + + F V K+A E + G+ Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747 Query: 466 KGAIG 470 G+ G Sbjct: 748 SGSRG 752 >gi|15605301|ref|NP_220087.1| general secretion pathway protein D [Chlamydia trachomatis D/UW-3/CX] gi|3329013|gb|AAC68174.1| Gen. Secretion Protein D [Chlamydia trachomatis D/UW-3/CX] gi|297748702|gb|ADI51248.1| General secretion pathway protein D [Chlamydia trachomatis D-EC] gi|297749582|gb|ADI52260.1| General secretion pathway protein D [Chlamydia trachomatis D-LC] Length = 760 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D + + ++ + V G + + S+T + A Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234 K ++ L++ + V ++V + E + ++ G G + S+A+ Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +F+ +GG KG++ + F L +R A P++ ++ A + Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687 Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465 + TP ++ P + + + F V K+A E + G+ Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747 Query: 466 KGAIG 470 G+ G Sbjct: 748 SGSRG 752 >gi|255311391|ref|ZP_05353961.1| general secretion pathway protein D [Chlamydia trachomatis 6276] gi|296436106|gb|ADH18280.1| general secretion pathway protein D [Chlamydia trachomatis G/9768] gi|296437034|gb|ADH19204.1| general secretion pathway protein D [Chlamydia trachomatis G/11222] gi|296437966|gb|ADH20127.1| general secretion pathway protein D [Chlamydia trachomatis G/11074] gi|297140467|gb|ADH97225.1| general secretion pathway protein D [Chlamydia trachomatis G/9301] Length = 760 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D + + ++ + V G + + S+T + A Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234 K ++ L++ + V ++V + E + ++ G G + S+A+ Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +F+ +GG KG++ + F L +R A P++ ++ A + Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687 Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465 + TP ++ P + + + F V K+A E + G+ Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747 Query: 466 KGAIG 470 G+ G Sbjct: 748 SGSRG 752 >gi|193070395|ref|ZP_03051337.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli E110019] gi|192956334|gb|EDV86795.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli E110019] Length = 512 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 114/262 (43%), Gaps = 29/262 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ L+I + Q+ + V+I +V + L+Q+G S T ++ + +F + + Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TA 315 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + S + + +F ++AL++ + + L++P++ ++ A + T S Sbjct: 316 QANISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346 S+ + G +L TP +L L ++ + Sbjct: 374 EKVASLESITSGTLLRVTPRILDGSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 433 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P + + T L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 434 TLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493 Query: 407 ETEIFIAATPFLVKPVAMRDLS 428 FL+K ++ S Sbjct: 494 S-----VVRLFLIKATPIKSAS 510 >gi|102227325|gb|ABF70182.1| AscC [Aeromonas hydrophila] Length = 614 Score = 146 bits (368), Expect = 9e-33, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 120/330 (36%), Gaps = 17/330 (5%) Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + D +E + L R ++D+ V+MV+ + Q +A Sbjct: 205 RSIQYRDTDVEAP--GVATILSRLLSDAG--VQMVNGEGTKGSTSHSGQAIVQADPSLNA 260 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 L + + A K++ L+ + + ++I ++ + L Q+G + G +G Sbjct: 261 VLVRDAPERMAMYG--KLIAALDKPSAR-IEVALSIIDINAEDLSQLGVDWRV-GIRTGS 316 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQ 283 ++ G G ++ ++D + ++ LE + ++ PTL Sbjct: 317 NQQVIIKTTGDRKGIEGGAALGSLVDSKGLDYLLARVNLLENQGNAQVVSRPTLLTQENT 376 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPV 340 A + K S + YG +L TP V+ G + L + E Sbjct: 377 QAVIDHSETYYVKI--SGERVAELKGITYGTMLRMTPRVIQLGDRPEVSLSLHIEDGNQK 434 Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + +P+ DT + G ++++ G+ +D++ + +P L IP LGALFR Sbjct: 435 PNSSGLDGIPTISRTVVDTIARVGHGQSLLIGGIYRDELSESLSKVPFLGDIPYLGALFR 494 Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + P L+ LS Sbjct: 495 SKESQTRRQVRLFIIEPRLIDDGIAHYLSL 524 >gi|238764026|ref|ZP_04624981.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia kristensenii ATCC 33638] gi|238697697|gb|EEP90459.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia kristensenii ATCC 33638] Length = 481 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 16/247 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + ++ L++ Q+ + VTI +V + Q+G S + S G SF + G+ + Sbjct: 243 RSLITQLDLR-PVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNS---GEPQNS 298 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 FS + D +F L+AL++ + R L+ P++ ++ A + T Sbjct: 299 ANGFSTV-IGDSGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLD--KNVTFYTKLQG 355 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKAD 357 + + G +L TP ++ + L + + + +++ + +P + Sbjct: 356 DKVAKLESITSGSLLRVTPRMIDADGVKEVLLNLNIQDGQQQASISSSEPLPEIQNSDIS 415 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T L G +++L G ++D + + IPLL IP+LG LFRN+ F Sbjct: 416 TQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRNTNKQSHS-----VVRLF 470 Query: 418 LVKPVAM 424 L+K V + Sbjct: 471 LIKAVPI 477 >gi|51594667|ref|YP_068858.1| type III secretion protein EscC/SpiA, outer membrane pore [Yersinia pseudotuberculosis IP 32953] gi|51587949|emb|CAH19552.1| possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia pseudotuberculosis IP 32953] Length = 523 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 15/237 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q+ + VTI +V + Q+G S + S G SF + F + FS + D Sbjct: 295 PIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA---KNNAEGFSTV-IGD 350 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +F L+AL++ + R L++P++ ++ A + T + + Sbjct: 351 TGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLD--KNVTFYTKLQGEKVAKLESVTS 408 Query: 313 GVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368 G +L TP ++ + L + + + N+ + +P R T L G ++ Sbjct: 409 GSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQATLQVGQSL 468 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +L G ++D + + IPLL IP+LG LFR++ FL+K V + Sbjct: 469 LLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHS-----VVRLFLIKAVPVN 520 >gi|22124429|ref|NP_667852.1| secretin [Yersinia pestis KIM 10] gi|45440265|ref|NP_991804.1| type III secretion protein [Yersinia pestis biovar Microtus str. 91001] gi|150260696|ref|ZP_01917424.1| possible type III secretion protein [Yersinia pestis CA88-4125] gi|165926705|ref|ZP_02222537.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. F1991016] gi|167402490|ref|ZP_02307945.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|218927462|ref|YP_002345337.1| putative type III secretion protein [Yersinia pestis CO92] gi|229836509|ref|ZP_04456675.1| possible type III secretion protein [Yersinia pestis Pestoides A] gi|229840118|ref|ZP_04460277.1| possible type III secretion protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842199|ref|ZP_04462354.1| possible type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904060|ref|ZP_04519173.1| possible type III secretion protein [Yersinia pestis Nepal516] gi|294502332|ref|YP_003566394.1| possible type III secretion protein [Yersinia pestis Z176003] gi|21957215|gb|AAM84103.1|AE013653_3 putative secretin [Yersinia pestis KIM 10] gi|45435121|gb|AAS60681.1| possible type III secretion protein [Yersinia pestis biovar Microtus str. 91001] gi|115346073|emb|CAL18941.1| possible type III secretion protein [Yersinia pestis CO92] gi|149290104|gb|EDM40181.1| possible type III secretion protein [Yersinia pestis CA88-4125] gi|165921328|gb|EDR38552.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. F1991016] gi|167048140|gb|EDR59548.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|229679830|gb|EEO75933.1| possible type III secretion protein [Yersinia pestis Nepal516] gi|229690509|gb|EEO82563.1| possible type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696484|gb|EEO86531.1| possible type III secretion protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706193|gb|EEO92201.1| possible type III secretion protein [Yersinia pestis Pestoides A] gi|262360412|gb|ACY57133.1| possible type III secretion protein [Yersinia pestis D106004] gi|262364362|gb|ACY60919.1| possible type III secretion protein [Yersinia pestis D182038] gi|294352791|gb|ADE63132.1| possible type III secretion protein [Yersinia pestis Z176003] gi|320013878|gb|ADV97449.1| putative type III secretion protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 523 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 15/237 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q+ + VTI +V + Q+G S + S G SF + F + + D Sbjct: 295 PIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA----KNNAEGFSTVIGD 350 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +F L+AL++ + R L++P++ ++ A + T + + Sbjct: 351 TGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLD--KNVTFYTKLQGEKVAKLESVTS 408 Query: 313 GVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368 G +L TP ++ + L + + + N+ + +P R T L G ++ Sbjct: 409 GSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQATLQVGQSL 468 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +L G ++D + + IPLL IP+LG LFR++ FL+K V + Sbjct: 469 LLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHS-----VVRLFLIKAVPVN 520 >gi|156973989|ref|YP_001444896.1| hypothetical protein VIBHAR_01700 [Vibrio harveyi ATCC BAA-1116] gi|156525583|gb|ABU70669.1| hypothetical protein VIBHAR_01700 [Vibrio harveyi ATCC BAA-1116] Length = 623 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 119/321 (37%), Gaps = 28/321 (8%) Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQS 171 ++ R ++ ++ ++ + + V +HG + + Sbjct: 218 VLSRVLSGVQTQIKATKESEETDINTAATTTKNVSVHGGASVEAEPGLNAIIVR------ 271 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSIT---GSSSGP 226 Q +K++ L+ + Q ++V +I ++ + L Q+G G++S Sbjct: 272 -DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGIEVGNNSIL 327 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQ 283 D G V+ G + K +LD + + LE + + ++ PTL Sbjct: 328 DIKTTGDVDGGDVTLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENV 387 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSE 338 A + K + T A + YG +L P ++ I L + E Sbjct: 388 EAVLNNSSTFYIKLIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGA 445 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + D+PS R + T + G ++++ G+ +D++ +PLL IP LGALF Sbjct: 446 QIPDGGVDDVPSIRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALF 505 Query: 399 RNSRFNREETEIFIAATPFLV 419 R++ T P +V Sbjct: 506 RSTTDTTRRTVRMFIIEPRIV 526 >gi|324014333|gb|EGB83552.1| bacterial type II and III secretion system protein [Escherichia coli MS 60-1] Length = 193 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 11/196 (5%) Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G + GG F G+ D L A++ + + ++ P + SGQ+ + G Sbjct: 2 LGSALSTAGGSF---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNV 58 Query: 294 LYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 + T + ++ HD GV L TP V+ G++ L I T A Sbjct: 59 PFITGKVTGESAGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQAS 118 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D+ + R+ TTV++ G T++L GL+ + +P++SKIP++G +F + + E Sbjct: 119 DIIT-NQRQIQTTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKADSNE 177 Query: 407 ETEIFIAATPFLVKPV 422 + ++I T +++P+ Sbjct: 178 QRIMYILLTAHIIRPL 193 >gi|166154787|ref|YP_001654905.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu] gi|166155662|ref|YP_001653917.1| general secretion pathway protein D [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336062|ref|ZP_07224306.1| general secretion pathway protein D [Chlamydia trachomatis L2tet1] gi|165930775|emb|CAP04272.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu] gi|165931650|emb|CAP07226.1| general secretion pathway protein D [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 760 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 61/310 (19%), Positives = 122/310 (39%), Gaps = 20/310 (6%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKS 229 + A K ++ L++ + V ++V + E + ++ G G + S Sbjct: 450 EKEALPKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVS 508 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +A+ +F+ +GG KG++ + F L +R A P++ ++ A Sbjct: 509 WASGGILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAI 563 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAG 346 + VSS YG+++ P + G+ + ++T+++ G N Sbjct: 564 VEEMSI-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHA 622 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D P R V + G T+++ GL + ++GIP L ++P +G LF + Sbjct: 623 DRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDS 682 Query: 407 ETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE---- 461 +TE+F+ TP ++ P + + + F V K+A E + Sbjct: 683 QTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTV 742 Query: 462 -GQNYKGAIG 470 G+ G+ G Sbjct: 743 WGEESSGSRG 752 >gi|284007632|emb|CBA73278.1| type III secretion outer membrane protein YscC,HrcC,mxiD,InvG,SsaC [Arsenophonus nasoniae] Length = 488 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 60/292 (20%), Positives = 123/292 (42%), Gaps = 25/292 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK-------KVMNLLNIAGEDQVTL 198 VL M +T + A + + +F + +N SS+K ++ L+IA + + Sbjct: 209 VLKQMNQTNANGVNAQQDTTSFAADPRQNAVVVSSNKHDMGLYSTLIKQLDIA-PTMIEV 267 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 V+I +V Q+G S + G + SF + G D + + +F Sbjct: 268 SVSIIDVDASDFNQLGIDWSASAKIGGGTISFNQG------TSGSDNFSTVIGNTGNFMV 321 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 L+ALE+ + + L+ P++ ++ A + T + + G +L Sbjct: 322 RLNALEKVSKAKILSRPSVVTLNNVQAVLD--KNITFYTKLQGDKVAKLESVTAGSLLRV 379 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLL 374 TP ++ ++ L + E + +N + +P + + T L +G +++L G + Sbjct: 380 TPRLIDSNGRKKVMLSLNIEDGQQTKAINDSEPLPQVQNSEIATQATLNTGESLLLGGFV 439 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +D Q ++ IPLL +P++G LFR+ +++ FL+K + Sbjct: 440 QDKDQTVQNKIPLLGDLPLIGGLFRSEDRSKQS-----VIRLFLIKAEPINQ 486 >gi|255348953|ref|ZP_05380960.1| general secretion pathway protein D [Chlamydia trachomatis 70] gi|255503492|ref|ZP_05381882.1| general secretion pathway protein D [Chlamydia trachomatis 70s] Length = 760 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D + + ++ + V G + + S+T + A Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234 K ++ L++ + V ++V + E + ++ G G + S+A+ Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +F+ +GG KG++ + F L +R A P++ ++ A + Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPIINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMF 687 Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465 + TP ++ P + + + F V K+A E + G+ Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747 Query: 466 KGAIG 470 G+ G Sbjct: 748 SGSRG 752 >gi|153947838|ref|YP_001402784.1| YscC/HrcC family type III secretion outer membrane protein [Yersinia pseudotuberculosis IP 31758] gi|170026130|ref|YP_001722635.1| YscC/HrcC family type III secretion outer membrane protein [Yersinia pseudotuberculosis YPIII] gi|186893670|ref|YP_001870782.1| YscC/HrcC family type III secretion outer membrane protein [Yersinia pseudotuberculosis PB1/+] gi|152959333|gb|ABS46794.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pseudotuberculosis IP 31758] gi|169752664|gb|ACA70182.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pseudotuberculosis YPIII] gi|186696696|gb|ACC87325.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pseudotuberculosis PB1/+] Length = 505 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 15/237 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q+ + VTI +V + Q+G S + S G SF + F + + D Sbjct: 277 PIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA----KNNAEGFSTVIGD 332 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +F L+AL++ + R L++P++ ++ A + T + + Sbjct: 333 TGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLD--KNVTFYTKLQGEKVAKLESVTS 390 Query: 313 GVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368 G +L TP ++ + L + + + N+ + +P R T L G ++ Sbjct: 391 GSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQATLQVGQSL 450 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +L G ++D + + IPLL IP+LG LFR++ FL+K V + Sbjct: 451 LLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHS-----VVRLFLIKAVPVN 502 >gi|299138919|ref|ZP_07032096.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] gi|298599073|gb|EFI55234.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] Length = 901 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 65/365 (17%), Positives = 129/365 (35%), Gaps = 42/365 (11%) Query: 93 NVGQANVILIGHDGKQ------------MLNLDILIERDIAHLEMTLRRFI-ADSNIRVE 139 +N I + + + ++ + D + + LR + I + Sbjct: 326 KPVTSNTIFVAQNNRTKRTDLDDLAVQTFYLTNVSQQNDANEILVALRNLLDPALKIYLV 385 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 + ++L + +++ + + ++ + S++ L I Sbjct: 386 ASQNALILRATPSELILAEKLINDLDRTRAEVVVDVAVLEVSRQKERDLGITLPT----- 440 Query: 200 VTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 + Q Q+ + SS+G + + + S + G L+ +F Sbjct: 441 ------SFGLTPQFSNQNVTNNNSSTGTNTNTGSGAPTTTTSSSLTLNSLGNLNATNFAV 494 Query: 259 VL-----HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---------- 303 L +AL R L P + A GQ ++ G + T S ++G Sbjct: 495 SLSGGTVNALLSDLDTRILQNPRIRATDGQHSTLKIGEKIPVATGSYNSGVSTGLANIGV 554 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVE 361 T T D GV + TPTV + L+++ E+S V + P R A+ ++ Sbjct: 555 QTQFTYLDVGVNIDITPTVHYDHEVSLKMKVEISASNGNVTISGVTEPIITQRVAEQVIQ 614 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L G +LAGLL+ + + G P L ++P F + ++ EI P +V+ Sbjct: 615 LKDGEPSILAGLLQQEDTKTINGTPGLGELPFFKYFFSSQDKVQQSDEIVFLIIPHIVRE 674 Query: 422 VAMRD 426 + D Sbjct: 675 SILTD 679 >gi|2897962|gb|AAC38377.1| EscC [Escherichia coli] Length = 512 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 114/262 (43%), Gaps = 29/262 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ L+I + Q+ + V+I +V + L+Q+G S T ++ + +F + + Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TA 315 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + S + + +F ++AL++ + + L++P++ ++ A + T S Sbjct: 316 QVNISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346 S+ + G +L TP +L L ++ + Sbjct: 374 EKVASLRSITSGTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 433 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P + + T L +G +++L G ++D K+GIPLLS IP++G+LF ++ + Sbjct: 434 TLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKH 493 Query: 407 ETEIFIAATPFLVKPVAMRDLS 428 FL+K ++ S Sbjct: 494 S-----VVRLFLIKATPIKSAS 510 >gi|242310207|ref|ZP_04809362.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523504|gb|EEQ63370.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 502 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 63/336 (18%), Positives = 123/336 (36%), Gaps = 39/336 (11%) Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 I++E++ VL G+ Q+S + +S G ++ + + L+ + Sbjct: 169 ETIKLEILG---VL-GVQEDFQESYVVINKGAGLVSVRG-DKEGLERVEAYIQKLHQRLQ 223 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKF------------ 238 QV + V I + G + P+ S A FGG Sbjct: 224 QQVLIDVHILSITHTHSDTTGINWDGLYNIQNIMIPTFSEGASFGGGGEVGNVSGINIVG 283 Query: 239 --VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 S + + S ++ L+ + +++ P + ++ Q A + G Y+ Sbjct: 284 QNGSNALQYGINIFSQGLSLNRIIEFLKTYGKVESISNPKVLTLNNQPAMISVGDILRYQ 343 Query: 297 TVS---SSTGATSVTTHD-------YGVVLHFTPTVLSPGRIGLRIQTEVSEP------V 340 S ++ T++T D GV+L TP + I L+I +++ + Sbjct: 344 KSSIYQNTNAQTTLTNTDNEYPSIFAGVLLDITPVIFGD-EIMLKINPSITKTKENRTEI 402 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 P+ + + V + + IVL GL+ +I ++ IP+L IP++ LF Sbjct: 403 PATAFESPPNLTTNQLSSIVSVKNNQKIVLGGLISKNISSIENKIPVLGSIPLIKPLFSY 462 Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 S+ EI P ++ +LS Y + Sbjct: 463 SQDIERTEEIVFIIEPKIISQEIQENLSLKSLGYQL 498 >gi|237804923|ref|YP_002889077.1| general secretion pathway protein D [Chlamydia trachomatis B/TZ1A828/OT] gi|231273223|emb|CAX10136.1| general secretion pathway protein D [Chlamydia trachomatis B/TZ1A828/OT] Length = 760 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 24/365 (6%) Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 D + + ++ + V G + + S+T + A Sbjct: 399 DTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK----YGSFIADSKTGTLIMVIEKEAL 454 Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSFAADF 234 K ++ L++ + V ++V + E + ++ G G + S+A+ Sbjct: 455 PKIKMLLKKLDVP-KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSWASGG 513 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 +F+ +GG KG++ + F L +R A P++ ++ A + Sbjct: 514 ILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAIVEEMS 568 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 VSS YG+++ P + G+ + ++T+++ G N D P Sbjct: 569 I-VVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDV 627 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R V + G T+++ GL + ++GIP L ++P +G LF + +TE+F Sbjct: 628 TRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMGSASDSQTEMF 687 Query: 412 IAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-----GQNY 465 + TP ++ P + + + F V K+A E + G+ Sbjct: 688 MFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWGEES 747 Query: 466 KGAIG 470 G+ G Sbjct: 748 SGSRG 752 >gi|117924415|ref|YP_865032.1| type II and III secretion system protein [Magnetococcus sp. MC-1] gi|117608171|gb|ABK43626.1| type II and III secretion system protein [Magnetococcus sp. MC-1] Length = 802 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 67/333 (20%), Positives = 122/333 (36%), Gaps = 35/333 (10%) Query: 141 VSDTVVLHGMVRTIQ---DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197 L+G + D A +L + ++ +K++ QV Sbjct: 199 SGSNTTLNGDRSSALHHLDQPNAGDLDRVLVFYHPDQRHEVDRLQKIIKDSIDHPAPQVY 258 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD---FSVKGVLDRF 254 ++ + EV + LK++G S S S + GG+ F+ G Sbjct: 259 VEGMVLEVSDEGLKELGASLSSITRGGVNSLSLGVLSPVAVSAGGGNVFSFTRDGTNAAV 318 Query: 255 SFETV-LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSV 307 + + ++AL + L+ P++ IS + A+ Y + +ST A +S Sbjct: 319 NNALIKINALVSKGEAQILSRPSILTISNRQATIQVVDVVQYPVLQNSTDAVGNTILSSY 378 Query: 308 TTHDY--GVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNA----------GDMPSYRVR 354 + G+ L+ P V + G + L I V V + G P R Sbjct: 379 SFEAVRPGITLNLRPRVTASGHEVNLEIDVTVESLVTANDGDVYNNSGTLLGTKPGSSSR 438 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIP----LLSKIPILGALFRNSRFNREETEI 410 + T +P ++ GL+ D + IP LL+ IPILGAL ++ + E+ Sbjct: 439 RVQTFARIPDRMPFIIGGLVSTDREMTSNRIPVVGDLLADIPILGALVGSTLRQYTKREV 498 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 I TP ++ ++ +V D++ F Sbjct: 499 IIVLTPHILHDDDESIVAT-----NVPKDSEFF 526 >gi|108810017|ref|YP_653933.1| type III secretion protein [Yersinia pestis Antiqua] gi|108813572|ref|YP_649339.1| type III secretion protein [Yersinia pestis Nepal516] gi|145600961|ref|YP_001165037.1| type III secretion protein [Yersinia pestis Pestoides F] gi|165936434|ref|ZP_02225002.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. IP275] gi|166010446|ref|ZP_02231344.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. E1979001] gi|166213955|ref|ZP_02239990.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. B42003004] gi|167419179|ref|ZP_02310932.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426134|ref|ZP_02317887.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469427|ref|ZP_02334131.1| possible type III secretion protein [Yersinia pestis FV-1] gi|270488950|ref|ZP_06206024.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis KIM D27] gi|108777220|gb|ABG19739.1| type III secretion protein [Yersinia pestis Nepal516] gi|108781930|gb|ABG15988.1| type III secretion protein [Yersinia pestis Antiqua] gi|145212657|gb|ABP42064.1| type III secretion protein [Yersinia pestis Pestoides F] gi|165915550|gb|EDR34159.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. IP275] gi|165990536|gb|EDR42837.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204930|gb|EDR49410.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Antiqua str. B42003004] gi|166963173|gb|EDR59194.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167054845|gb|EDR64647.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270337454|gb|EFA48231.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia pestis KIM D27] Length = 505 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 15/237 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q+ + VTI +V + Q+G S + S G SF + F + + D Sbjct: 277 PIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFA----KNNAEGFSTVIGD 332 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +F L+AL++ + R L++P++ ++ A + T + + Sbjct: 333 TGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLD--KNVTFYTKLQGEKVAKLESVTS 390 Query: 313 GVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368 G +L TP ++ + L + + + N+ + +P R T L G ++ Sbjct: 391 GSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQATLQVGQSL 450 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +L G ++D + + IPLL IP+LG LFR++ FL+K V + Sbjct: 451 LLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHS-----VVRLFLIKAVPVN 502 >gi|332535460|ref|ZP_08411243.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Pseudoalteromonas haloplanktis ANT/505] gi|332035105|gb|EGI71619.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly [Pseudoalteromonas haloplanktis ANT/505] Length = 639 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 35/287 (12%) Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------- 219 S R + + KV++ + + QV + V + EV + LKQ S+ Sbjct: 326 SNIARATLLSVAGGKVLSSIEVEDLPQVRVSVQLYEVNQRRLKQWRPDISVLSNGYEKEA 385 Query: 220 -----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G + S S + + + +++ +F+ + + LE+ RTL+ Sbjct: 386 GLFGRDGMTERESGSATIENALQLIGGQLTNNLQLSTSQFAIDMLFSLLEQEGISRTLSR 445 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATS------------VTTHDYGVVLHFTPTV 322 PT+T ++G+SA F GG+ T S +G TS +GV L+ V Sbjct: 446 PTITVLAGESAVFKVGGEVPVPTSYSPSGITSGQQGSSGSVFSGTEFKSFGVELNVRAMV 505 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGL 373 RI L + +S P + A + ++ R T+ L G +++ GL Sbjct: 506 DDKDRITLDLNPVISLPDTTLTAEIAQSTGSSLNSSAFNTRSMQTSTRLKDGQPLIIGGL 565 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + D + +P + +LG L + + E+ I TP LV+ Sbjct: 566 ISTDNNASHDFVPDGNGNSMLGKLSETTSKSENNRELIIVVTPNLVR 612 Score = 70.5 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 5/129 (3%) Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 D+ + + T DV V + R + + K +G+ ++++ D K + + D + L Sbjct: 51 RDISRIALGHETTLDVNVVNGRELLILAKKLGRTSMMVWYDD-KSSETFLLGVTEDYSVL 109 Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL----SQSGRNQYANS 179 E L D + + VVL G V TI A E ++ +L SQ+ + ++ Sbjct: 110 ENALNDIHPDVQLTIAPDRHAVVLRGEVPTINYRHAAYEAAKNYLYASSSQASQPVITSN 169 Query: 180 SSKKVMNLL 188 ++ + N L Sbjct: 170 PNQGMFNSL 178 >gi|15836348|ref|NP_300872.1| general secretion protein D [Chlamydophila pneumoniae J138] gi|8979189|dbj|BAA99023.1| general secretion protein D [Chlamydophila pneumoniae J138] Length = 754 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 54/271 (19%), Positives = 108/271 (39%), Gaps = 16/271 (5%) Query: 184 VMNLLNIAGEDQVTLKVTIAE-----VRRDILKQIGFQHSITGSSSGPSKSFAADFG-GK 237 ++ L++ + V ++V + E ++ L + + PS S+A G + Sbjct: 452 LLKKLDVP-KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILE 510 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F+ +G G ++ L +R A P++ ++ A + Sbjct: 511 FLFKGS----TGSSIVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEMSI-A 565 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 VSS YG+++ P + G+ + ++T+++ G N D P R Sbjct: 566 VSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRR 625 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 V + G T+++ GL + +GIP L IP +G LF S + TE+F+ Sbjct: 626 NITNKVRIADGETVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFI 685 Query: 415 TPFLVK-PVAMRDLSRPDDHYSVEDDAKAFF 444 TP +++ PV ++ S + + ++ Sbjct: 686 TPKILENPVEQQERKEEALLSSRPGEREEYY 716 >gi|15618724|ref|NP_225010.1| general secretion protein D [Chlamydophila pneumoniae CWL029] gi|16752225|ref|NP_445593.1| general secretion pathway protein D [Chlamydophila pneumoniae AR39] gi|33242175|ref|NP_877116.1| general secretion pathway protein D precursor [Chlamydophila pneumoniae TW-183] gi|4377127|gb|AAD18953.1| General Secretion Protein D [Chlamydophila pneumoniae CWL029] gi|7189969|gb|AAF38829.1| general secretion pathway protein D [Chlamydophila pneumoniae AR39] gi|33236686|gb|AAP98773.1| general secretion pathway protein D precursor [Chlamydophila pneumoniae TW-183] Length = 754 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 54/271 (19%), Positives = 108/271 (39%), Gaps = 16/271 (5%) Query: 184 VMNLLNIAGEDQVTLKVTIAE-----VRRDILKQIGFQHSITGSSSGPSKSFAADFG-GK 237 ++ L++ + V ++V + E ++ L + + PS S+A G + Sbjct: 452 LLKKLDVP-KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILE 510 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F+ +G G ++ L +R A P++ ++ A + Sbjct: 511 FLFKGS----TGSSIVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEMSI-A 565 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 VSS YG+++ P + G+ + ++T+++ G N D P R Sbjct: 566 VSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRR 625 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 V + G T+++ GL + +GIP L IP +G LF S + TE+F+ Sbjct: 626 NITNKVRIADGETVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFI 685 Query: 415 TPFLVK-PVAMRDLSRPDDHYSVEDDAKAFF 444 TP +++ PV ++ S + + ++ Sbjct: 686 TPKILENPVEQQERKEEALLSSRPGEREEYY 716 >gi|217076176|ref|YP_002333892.1| bacterial type II and III secretion system protein [Thermosipho africanus TCF52B] gi|217036029|gb|ACJ74551.1| bacterial type II and III secretion system protein [Thermosipho africanus TCF52B] Length = 1318 Score = 144 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 38/257 (14%) Query: 198 LKVTIAEVRRDILKQI-----------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 + +AE R +KQ ++ + +D G DF+ Sbjct: 1066 IDAKVAEEVRSYIKQNLNAKLALIEVKVVDEELSDNFEYNLGKITSDLG---TLSNDDFN 1122 Query: 247 VKGVLDRFSFETVLHALERAT--------------------AIRTLAEPTLTAISGQSAS 286 VK L S E +++ L LA P + A SG++AS Sbjct: 1123 VKLSLSNLSIEGIINKLLSIGSDGNSSLNIEIGNGNNVTNKNTNVLASPNVVAKSGETAS 1182 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGV 343 G + +S++ + + GV L TP + + I L + +VS + Sbjct: 1183 ILIGDKIPI-VLSTAENTQEIKYIESGVTLEITPYINADNTIDLELNIKVSSFDWDLKSQ 1241 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + +P R R+ + + L T+V+ GL +++ + IP+L +PI+G F + + Sbjct: 1242 YSLSLPVERTREFSSKILLKENQTLVIGGLSREENSKTVSKIPILGDLPIIGKFFVSEKS 1301 Query: 404 NREETEIFIAATPFLVK 420 ++ + I I + +VK Sbjct: 1302 DKVKRNIVIFISAKVVK 1318 >gi|206889986|ref|YP_002248061.1| type II protein secretion protein-like protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741924|gb|ACI20981.1| type II protein secretion protein-like protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 538 Score = 144 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 107/269 (39%), Gaps = 32/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------TGSSSGPSKSFAA 232 ++ + + QV ++ + EV + G S T S G + F Sbjct: 269 QEYLETVKKVMSRQVLIEAKVIEVALSKSLKYGIDWSFLREWTHGTHTWSIGGATSGFTN 328 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G FS+ + F +++ AL +RTL+ P ++ ++GQ++ FT G Sbjct: 329 VIGSGDPYSKIQFSLTTTAIK-EFSSLIKALGEFGDVRTLSNPRVSIMNGQTSLFTVGRN 387 Query: 293 HLYKTVSSSTGATSVTTHDY------------GVVLHFTPTVLSPGRIGLRIQTEVSE-- 338 + + + + S TS T G+++ P + G I L I VS Sbjct: 388 YSFISKAQSNVTTSGTGSPIITYTVETSNLLSGLIIGIVPYIDEKGEISLTITPIVSNLI 447 Query: 339 --------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 +P +R+ TTV++ G I++ G++K + + +PLL Sbjct: 448 EMRSATFGSSGAETTIQLPRVDLRELSTTVKVKDGEIIIIGGMIKKEESFSENKMPLLGD 507 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP++G LF++ TE+ I P ++ Sbjct: 508 IPVVGELFKSKDKEETNTELVILLQPRII 536 >gi|77919277|ref|YP_357092.1| type II secretory pathway, component HofQ [Pelobacter carbinolicus DSM 2380] gi|77545360|gb|ABA88922.1| type II secretory pathway, component HofQ [Pelobacter carbinolicus DSM 2380] Length = 767 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 114/326 (34%), Gaps = 49/326 (15%) Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 LR + I V + +V+ D +EL+ L S RN Sbjct: 290 LRTILQTRKIYVHDELNAIVMR-------DKPEVIELARQILEASDRND----------- 331 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 +V + + EV L IG + S S+G ++ G + D Sbjct: 332 -------SEVVFDLELVEVSHRDLLDIGPKLSSYSISAGMGRTILDTDGNVVTNLVSDTL 384 Query: 247 VKGVLDRFSF-------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G + LA P + + + A G + Sbjct: 385 AAGGTTDTLVRSFSRLESFYTLPTATFDFAKTLIDSEILANPKIRVKNREKAKVHIGTKE 444 Query: 294 LYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNA 345 T + ST T+V D GV L P + I ++ EVS + Sbjct: 445 PIVTTNISTTTGDVTSTNVQYIDVGVKLDVEPNIQLDDTIVTKLTLEVSSILEKEEIAGG 504 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 G A +++ L G ++ GL+++D+ ++ +P + IPI+G LF + Sbjct: 505 GSALRISTTNAGSSLILKDGERTIIGGLIRNDLSDTRDTLPFIGSIPIIGHLFTGRSKEK 564 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPD 431 ++EI ++ TP +V+ V D+ RPD Sbjct: 565 NKSEILLSITPHIVRSV---DMPRPD 587 >gi|307247528|ref|ZP_07529573.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856031|gb|EFM88189.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 204 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 5/179 (2%) Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + LAEP ++ +SG++A GG+ + G SV ++G+ L V R Sbjct: 4 NGKILAEPNISMLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDR 62 Query: 328 IGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + VS + +P + R++ +T E+ +G + +++GLL + + + Sbjct: 63 IRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKV 122 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 P+L IPILGA FRN+ +RE E+ + AT LVKPV + P + + FF Sbjct: 123 PVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFF 179 >gi|295111311|emb|CBL28061.1| Type II secretory pathway, component PulD [Synergistetes bacterium SGP1] Length = 193 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 3/168 (1%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F+ ALE + LA P++ I G A + Y + G + +T G Sbjct: 8 FDGAFRALEERGKGKALASPSVITIDGMEARVELTQDYPYISERDDAGNPTWSTQTVGPQ 67 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 + TP V G I L + E E + G MP R T V + G V+ G Sbjct: 68 MTMTPRVGRDGVINLALDLETGEVIQMITGSTGEQMPRTSKRHVTTNVRVRDGEPFVIGG 127 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L D+ + + IP+L ++P+LG LF + +T++ + P+++ Sbjct: 128 LFSDNKSRTRNRIPILGQLPLLGELFTYRQDEHRKTQVVMLVVPYVLD 175 >gi|253988518|ref|YP_003039874.1| type III secretion outer membrane protein pscc [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637900|emb|CAR66529.1| type iii secretion outer membrane protein pscc [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779968|emb|CAQ83129.1| type iii secretion outer membrane protein pscc [Photorhabdus asymbiotica] Length = 618 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 55/324 (16%), Positives = 118/324 (36%), Gaps = 23/324 (7%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + L R ++D+N+ + + G + + +A + + + + + Sbjct: 214 GIATVLSRLLSDANVT-TVTGEMSSSTGGNHSSRAVIQAEPSLNAIIVRDNPERMSMYTH 272 Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------- 234 ++N L+ + + ++I ++ D L ++G + G ++GP Sbjct: 273 --LINALDKPSAR-IEVALSIVDINADNLSELGVDWQV-GINTGPRHIIDITTSAREKEK 328 Query: 235 --GGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G G ++ ++DR + + LE + + ++ PTL A Sbjct: 329 EKNGGKGESIGSTALGSLVDRRGLDYLLAKITLLESKGSAQVVSRPTLLTQENTQAVIDH 388 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNA- 345 + K + + YG +L TP V+ G I L + E + Sbjct: 389 NETYYVKVEGERV--AELKSLTYGTMLRMTPRVIKIGDTPEISLNLHIEDGNQKPNSSGL 446 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 G +P+ DT + G ++++ G+ +D++ + +P L IP LG LFR + Sbjct: 447 GGIPTINRTIVDTVARVGHGQSLLIGGIYRDEMSETVRKVPFLGDIPYLGVLFRTTTEQV 506 Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429 + P L+ L+ Sbjct: 507 RRSVRLFIIEPRLIDSGVANYLAL 530 >gi|260775643|ref|ZP_05884539.1| type III secretion system outer membrane pore YscC [Vibrio coralliilyticus ATCC BAA-450] gi|260608059|gb|EEX34228.1| type III secretion system outer membrane pore YscC [Vibrio coralliilyticus ATCC BAA-450] Length = 686 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 73/410 (17%), Positives = 131/410 (31%), Gaps = 34/410 (8%) Query: 75 TKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 + D V + G ++I L+ D LN +E + + R Sbjct: 194 SVTDREVRYRNEHIVI---PGVTSLIKELLSQDRNPALN---EVEHLYNLNQERILRQTQ 247 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS-SKKVMNLLNIA 191 +M ++ G +S V S + A S ++++ L+ Sbjct: 248 SIEGGDQMDISPYIMGGSRAPETNSVNNVSADVRSNSVLIYDDLAKRSMYQRLIEKLDKP 307 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 V + I ++ R L QIG + G G + + Sbjct: 308 -SRMVEIDAIILDIERKQLSQIGVNWGYQKNDF--------SLGSMMPQGGVQTATLFIQ 358 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D+ F L ALE LA P++ ++ Q A S +T V Sbjct: 359 DKGRFYAELQALEMKGKATVLANPSVLTMANQPAVIDSSETAFIQTEGERV--VDVREVT 416 Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 G L P +L+ G I L + E + + PS T + ++ Sbjct: 417 AGTGLQVVPRILTGGGKTTIQLNVDIE-DGNIFEEEDKETPSVNRSTISTQALVTPEQSL 475 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 V G + + +P+L IP+LG+LF+ + R + TP ++ +D+ Sbjct: 476 VFGGFNVSENTRSTSKVPVLGDIPLLGSLFQVQKEARTKRVRLFILTPRILDSSMTQDVK 535 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI------GFI 472 Y D+ + N +I + + + G G+I Sbjct: 536 ----DYVQFDEDRDVVANAQEEIKRRRHGKQEALKVDVGDALRSLIKGYI 581 >gi|269302606|gb|ACZ32706.1| putative general secretion pathway protein D [Chlamydophila pneumoniae LPCoLN] Length = 754 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 62/309 (20%), Positives = 118/309 (38%), Gaps = 30/309 (9%) Query: 184 VMNLLNIAGEDQVTLKVTIAE-----VRRDILKQIGFQHSITGSSSGPSKSFAADFG-GK 237 ++ L++ + V ++V + E ++ L + + PS S+A G + Sbjct: 452 LLKKLDVP-KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILE 510 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F+ +G G ++ L +R A P++ ++ A + Sbjct: 511 FLFKGS----TGSSIVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEMSI-A 565 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 VSS YG+++ P + G+ + ++T+++ G N D P R Sbjct: 566 VSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRR 625 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 V + G T+++ GL + +GIP L IP +G LF S + TE+F+ Sbjct: 626 NITNKVRIADGETVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFI 685 Query: 415 TPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA--------------SE 459 TP +++ PV ++ S + + ++ + A S+ Sbjct: 686 TPKILENPVEQQERKEEALLSSRPGEREEYYQALAASEAAARAAHKKLEVFPASGVSLSQ 745 Query: 460 VEGQNYKGA 468 VEGQ Y G Sbjct: 746 VEGQEYDGC 754 >gi|83645990|ref|YP_434425.1| putative type III secretion protein YscC [Hahella chejuensis KCTC 2396] gi|83634033|gb|ABC30000.1| putative type III secretion protein YscC [Hahella chejuensis KCTC 2396] Length = 573 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 58/357 (16%), Positives = 122/357 (34%), Gaps = 43/357 (12%) Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM------------VSDTVVLHGM 150 + I + + L+ L R I++ + V + Sbjct: 190 DDRSMVVGGQRIAVPGVASSLQAILGRRISEPTVSAIAPKTLPKLKGQGLVQGRYGPTEI 249 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---------------NLLNIAGED- 194 + + ++ V + + +++++ NL++ + Sbjct: 250 TPSQETNREIVSVRSEEGGVNSETAGYIIANERLNAVIVHDRQSKMPLYQNLIDTLDQPR 309 Query: 195 -QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------FAADFGGKFVSEGGDF 245 QV ++V+I +V D L ++GF+ I G + + + + + V +G +F Sbjct: 310 SQVEIEVSIIDVSTDRLNEMGFEWRINGRNGSFTNADFSQGALPRSPNELSFVVGDGANF 369 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 S + F + + AL L++PT+ + A + V Sbjct: 370 STLLTNTQDLFLSRIRALSEDGDASVLSQPTILTLDNIEAVLDHSTTFFVRLVGDR--EV 427 Query: 306 SVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 + G V+ TP ++ +I L I E G D+P+ T + Sbjct: 428 DLFPVSVGSVVRVTPHIVKGDLSDKIHLNINIE-DGQQTGQAVDDIPAVSKSIITTEALV 486 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G++++ G + + IP+L IP+LG LFR ++ +P +V Sbjct: 487 NDNGSLLVGGYYFNQDSTNRSKIPVLGDIPLLGRLFRTDGSQLQKRARLFLISPRIV 543 >gi|242316560|ref|ZP_04815576.1| general secretion pathway protein D [Burkholderia pseudomallei 1106b] gi|242139799|gb|EES26201.1| general secretion pathway protein D [Burkholderia pseudomallei 1106b] Length = 235 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 19/182 (10%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 + GQ+ +G + +++ + D G+ LH P + G + L++ TE S Sbjct: 1 MVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAV 60 Query: 340 VIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V G N P++ R +TV +G IVL GL++D+ Q +PLL IP +G Sbjct: 61 VPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIG 120 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 LFR+ R++T + + P ++ + A+A NR + I G Sbjct: 121 QLFRSEGKTRQKTNLMVFLRPVIIND---------------RETAQAVTSNRYDYIQGVT 165 Query: 456 EA 457 A Sbjct: 166 GA 167 >gi|153832481|ref|ZP_01985148.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio harveyi HY01] gi|148871276|gb|EDL70148.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio harveyi HY01] Length = 623 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 117/321 (36%), Gaps = 28/321 (8%) Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQS 171 ++ R ++ ++ ++ + + V +HG + + Sbjct: 218 VLSRVLSGVQTQIKATKESEETDINAAATTTKNVSVHGGASVEAEPGLNAIIVR------ 271 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSK- 228 Q +K++ L+ + Q ++V +I ++ + L Q+G + S Sbjct: 272 -DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGIEVANNSIL 327 Query: 229 --SFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQ 283 D G V+ G + K +LD + + LE + + ++ PTL Sbjct: 328 DIKTTGDVDGGDVTLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENV 387 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSE 338 A + K + T A + YG +L P ++ I L + E Sbjct: 388 EAVLNNSSTFYVKLIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGA 445 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + D+PS R + T + G ++++ G+ +D++ +PLL IP LGALF Sbjct: 446 QIPDGGVDDVPSIRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALF 505 Query: 399 RNSRFNREETEIFIAATPFLV 419 R++ T P +V Sbjct: 506 RSTTDTTRRTVRMFIIEPRIV 526 >gi|15835475|ref|NP_297234.1| general secretion pathway protein D [Chlamydia muridarum Nigg] gi|270285655|ref|ZP_06195049.1| general secretion pathway protein D [Chlamydia muridarum Nigg] gi|270289664|ref|ZP_06195966.1| general secretion pathway protein D [Chlamydia muridarum Weiss] gi|301337051|ref|ZP_07225253.1| general secretion pathway protein D [Chlamydia muridarum MopnTet14] gi|7190887|gb|AAF39657.1| general secretion pathway protein D [Chlamydia muridarum Nigg] Length = 759 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 60/294 (20%), Positives = 118/294 (40%), Gaps = 15/294 (5%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKS 229 + A K ++ L++ + V ++V + E + ++ G G + S Sbjct: 449 EKEALPKIKMLLKKLDVP-KKMVRIEVLLFERKLSSQRKSGLNLLRLGEEVCKQGTQAVS 507 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 +A +F+ +GG KG++ + F L +R A P++ ++ A Sbjct: 508 WANGGILEFLFKGG---AKGIVPSYDFAY--QFLMAQEDVRINASPSVVTMNQTPARIAI 562 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAG 346 + VSS YG+++ P + G+ + ++T+++ G N Sbjct: 563 VEEMSI-AVSSEKDKAQYNRAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGKNQA 621 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 D P R V + G T+++ GL + ++GIP L ++P +G LF + Sbjct: 622 DRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDATSDS 681 Query: 407 ETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 +TE+F+ TP ++ PV + S + + F V+ K+A E Sbjct: 682 QTEMFMFITPKILDNPVEEEEKLECAFLASRPGENEDFLRAVVSGQQAAKQAME 735 >gi|269963152|ref|ZP_06177487.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832116|gb|EEZ86240.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 623 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 61/320 (19%), Positives = 121/320 (37%), Gaps = 26/320 (8%) Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ--SG 172 ++ R ++ ++ ++ + + T + + A +E L+ Sbjct: 218 VLSRVLSGVQTQIKATKESEETDINTAATTT------KNVSVHAGASVEAEPGLNAIIVR 271 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSIT---GSSSGPS 227 Q +K++ L+ + Q ++V +I ++ + L Q+G G++S Sbjct: 272 DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGIEVGNNSILD 328 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284 D G V+ G + K +LD + + LE + + ++ PTL Sbjct: 329 IKTTGDVDGGDVTLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVE 388 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339 A + K + T A + YG +L P ++ I L + E Sbjct: 389 AVLNNSSTFYVKLIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQ 446 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + D+PS R + T + G ++++ G+ +D++ +PLL IP LGALFR Sbjct: 447 IPDGGVDDVPSIRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 506 Query: 400 NSRFNREETEIFIAATPFLV 419 ++ T P +V Sbjct: 507 STTDTTRRTVRMFIIEPRIV 526 >gi|117924235|ref|YP_864852.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1] gi|117607991|gb|ABK43446.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1] Length = 574 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 57/315 (18%), Positives = 116/315 (36%), Gaps = 42/315 (13%) Query: 146 VLHGMVRTIQDSQRAVELSETF--LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 ++ ++ + +A L+ L R + +K V + G QV ++ + Sbjct: 261 IIQNLISSQGTEGQAYSLNRMTGTLHLKARPSVVRTVTKLVDQFKEVIG-RQVLIETRVM 319 Query: 204 EVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKGV--------- 250 E+ + + G S G S ++ G F + + Sbjct: 320 EITLNETYRTGVDWWAFKGSIAAMMGQSGTYTGRIGSTNALSSNTFGLADISYPTTTTAA 379 Query: 251 ------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----- 299 + + ++ L++ ++ L+ PT+ A GQ + + G + Y + S Sbjct: 380 TGLGLVISGANGAAIVDLLKQFGDVQVLSNPTIRARHGQPSMISVGTSNTYVSESEITTT 439 Query: 300 ------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---------GVN 344 ++ V T G+++ TP + GR+ + + S+ G N Sbjct: 440 GTGTTATTQADVVVNTVFDGLMIGVTPFIKEDGRVVMTVHPIKSDVTASSLDLVSVGGTN 499 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P +++ T +E SG + L GL+ + K G+PLL IP+LG LF + Sbjct: 500 QVALPEVELKEMSTILETHSGDLVFLGGLIDKEKSATKTGMPLLGDIPLLGRLFSTDSSS 559 Query: 405 REETEIFIAATPFLV 419 + E+ I ++ Sbjct: 560 DKTREMIIMLRVSVL 574 >gi|238752349|ref|ZP_04613827.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia rohdei ATCC 43380] gi|238709390|gb|EEQ01630.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia rohdei ATCC 43380] Length = 486 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 58/296 (19%), Positives = 111/296 (37%), Gaps = 21/296 (7%) Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVT 197 + + L G S + + ++ +L++ + Q+ Sbjct: 203 SAGNNLPLAGTEGQEDAHINMPLFSADPRQNAVIIRDRQANMPLYSSLISQLDQRPVQIE 262 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 + VTI +V + Q+G S + S G SF D + D +F Sbjct: 263 ISVTIIDVDAGDISQLGIDWSASTSIGGMGISFNRGLA----KGNSDGFSTVIGDTGNFM 318 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 L+AL++ + R L+ P++ ++ A + T + + G +L Sbjct: 319 VRLNALQKNSRARVLSRPSVVTLNNIQAVLD--KNVTFYTKLQGDKVAKLESVTSGSLLR 376 Query: 318 FTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 TP ++ + L IQ + + +++ +P + T L G +++L G Sbjct: 377 VTPRMIDADGVKEVLLNLNIQDGQQQVSL-ISSEPLPQIQNSDISTQATLRVGQSLLLGG 435 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK--PVAMRD 426 ++D + + IPLL IP+LG LFR++ FL+K PV R+ Sbjct: 436 FIQDKQIESQNKIPLLGDIPLLGGLFRSTEKQSHS-----VVRLFLIKAVPVDARE 486 >gi|120609177|ref|YP_968855.1| YscC/HrcC family type III secretion outer membrane protein [Acidovorax citrulli AAC00-1] gi|58700619|gb|AAW81010.1| HrcC [Acidovorax citrulli] gi|120587641|gb|ABM31081.1| type III secretion outer membrane pore, YscC/HrcC family [Acidovorax citrulli AAC00-1] Length = 683 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 110/295 (37%), Gaps = 18/295 (6%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS-------KKVMNLLNIAGEDQVTLKVTIAE 204 T + +A E F + G N + ++ L+ V L+ TI E Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLD-QKPQLVELEATIIE 456 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V D + +G S+ +S S + S S + ++ALE Sbjct: 457 VNSDSVDALGVNWSLRAGTSSISTNLPG------PSTPAALSTIVLDAGRHLLANVNALE 510 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 R L++P++ ++ ++A + V+ + A + G +L TP V Sbjct: 511 AQGKARILSKPSVLGVANRAAVMRE-KRVATVRVAGNLEANLFQ-IEAGTLLQMTPQVTP 568 Query: 325 -PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G+ +++ + + N D +P + + T + G ++++ G+ + Sbjct: 569 VDGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQD 628 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +P LSK+P++G +FRN+ TE TP ++ A +S Sbjct: 629 NAVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVIAQDAPTTVSSISPEVRKP 683 >gi|332159936|ref|YP_004296513.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607512|emb|CBY29010.1| secretion system apparatus SsaC [Yersinia enterocolitica subsp. palearctica Y11] gi|325664166|gb|ADZ40810.1| Type III secretion outer membrane pore, YscC/HrcC family [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 493 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 54/292 (18%), Positives = 111/292 (38%), Gaps = 17/292 (5%) Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVT 197 + + L G + A S + + ++ +L+ + Q+ Sbjct: 210 SAGNHLPLAGEKESEDAPVSAPLFSADPRQNAVIIRDRQANMPLYSSLITQLDQRPVQIE 269 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 + VTI +V + Q+G S + S G SF + D + + +F Sbjct: 270 ISVTIIDVDAGDISQLGIDWSASTSIGGAGVSFNSGEAAPH----SDGFSTVIGNTGNFM 325 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 L+AL++ + R L+ P++ ++ A + T + + G +L Sbjct: 326 VRLNALQKNSRARVLSRPSVVTLNNIQAVLD--KNVTFYTKLQGDKVAKLESITSGSLLR 383 Query: 318 FTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGL 373 TP ++ + L + + + +++ + +P + T L G +++L G Sbjct: 384 VTPRMIDSDGVKEVLLNLNIQDGQQQAPLSSSEPLPEIQNSDISTQATLRVGQSLLLGGF 443 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++D + + IPLL IP+LG LFR++ FL+K V + Sbjct: 444 IQDKQIESQNKIPLLGDIPLLGGLFRSTNKQSHS-----VVRLFLIKAVPVN 490 >gi|37527640|ref|NP_930984.1| Type III secretion component protein SctC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787075|emb|CAE16150.1| Type III secretion component protein SctC [Photorhabdus luminescens subsp. laumondii TTO1] Length = 614 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 121/319 (37%), Gaps = 32/319 (10%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ----RAVELSETFLSQ--SGRNQ 175 + L R ++D+N+ + G + + RAV +E L+ N Sbjct: 211 GIATILSRLLSDTNVTA--------VTGEASSPSMGESYSSRAVVQAEPSLNAIIVRDNP 262 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 S ++N L+ + + ++I ++ + L ++G + G ++GP Sbjct: 263 ERMSMYAHLINALDKPSAR-IEVALSIVDIDANNLSELGVDWQV-GINTGPRHIIDITTS 320 Query: 236 GKFVS-------EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSA 285 + + G ++ ++DR + + LE + + ++ PTL A Sbjct: 321 AREKTEIKEKGESIGSAALGSLVDRRGLDYLLAKITLLESKGSAQVISRPTLLTQENTQA 380 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIG 342 + + K + + + YG +L P V+ G I L + E Sbjct: 381 VIDNNETYYVKV--NGERVAELKSLTYGTMLRMIPRVIQVGDSSEISLDLHIEDGNQKPN 438 Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + D +P+ DT + G ++++ G+ +D++ Q+ +P L IP LG LFRN+ Sbjct: 439 SSGQDGIPTISRTVVDTVARVGHGQSLLIGGIYRDEMSQITRKVPFLGDIPYLGVLFRNT 498 Query: 402 RFNREETEIFIAATPFLVK 420 + P L+ Sbjct: 499 SEQVRRSVRLFIIEPRLID 517 >gi|254455430|ref|ZP_05068859.1| type II Secretion PilQ [Candidatus Pelagibacter sp. HTCC7211] gi|207082432|gb|EDZ59858.1| type II Secretion PilQ [Candidatus Pelagibacter sp. HTCC7211] Length = 516 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 111/263 (42%), Gaps = 30/263 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------------TGSSSGPS 227 KV+N ++I E QV ++ + + + KQ+G + + SS+G Sbjct: 260 DKVLNEIDIKTE-QVLIEAFVVKATSEFEKQLGTRLGGYYKRNDEQIGGIVGSTSSAGTL 318 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFS---------FETVLHALERATAIRTLAEPTLT 278 +A + +F+ G + + ALE+ + T++ P + Sbjct: 319 DDTSAALAQVAKDQITNFAATGATSGIGILKKTGSAVLKAEITALEKMGMVETISNPKVF 378 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 I+ Q AS T G + Y+T S T +T + + + L TP+++ G + L IQ + Sbjct: 379 TINNQPASVTQGKEIPYETTSEGTTST--SFKEAALKLQVTPSIIGDGNVLLDIQVNNDD 436 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-LLSKIPILGAL 397 + D P + T + + G +V+ G+ ++I + KE +P L +P++G L Sbjct: 437 AD---TSQDEPPITKMEIITKLLVADGDIVVIGGIKSNNISKAKEQVPGGLGNVPVIGNL 493 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 + + + E+ I P ++ Sbjct: 494 LKYKKKEDKLEELLIFIAPRVLD 516 >gi|238787451|ref|ZP_04631249.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia frederiksenii ATCC 33641] gi|238724238|gb|EEQ15880.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia frederiksenii ATCC 33641] Length = 481 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 100/237 (42%), Gaps = 15/237 (6%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q+ + VTI +V + Q+G S + S G SF + G S FS + D Sbjct: 253 PVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNS---GNAKSNADGFSTV-IGD 308 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +F L+AL++ + R L+ P++ ++ A + T + + Sbjct: 309 TGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLD--KNVTFYTKLQGDKVAKLESVTS 366 Query: 313 GVVLHFTPT-VLSPG--RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368 G +L TP + S G + L + + + +++ + +P + T L G ++ Sbjct: 367 GSLLRVTPRMINSDGVKEVMLNLNIQDGQQQAPISSSEPLPEIQNSDISTQATLRVGQSL 426 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +L G ++D + + IPLL IP+LG LFR++ FL+K V + Sbjct: 427 LLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTEKQSHS-----VVRLFLIKAVPVN 478 >gi|163802024|ref|ZP_02195920.1| putative type III secretion protein YscC [Vibrio sp. AND4] gi|159174165|gb|EDP58973.1| putative type III secretion protein YscC [Vibrio sp. AND4] Length = 623 Score = 143 bits (360), Expect = 8e-32, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 15/241 (6%) Query: 192 GEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSK---SFAADFGGKFVSEGGDFS 246 + Q ++V +I ++ + L Q+G + S D G V+ G + Sbjct: 288 DQPQSRIEVALSIVDISANDLSQLGIDWRAGIGAGNNSVLDIKTTGDVAGGDVTLGSGQT 347 Query: 247 VKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 K +LD + + LE + + ++ PTL A + K + T Sbjct: 348 FKSLLDVTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKLIGKETA 407 Query: 304 ATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 A + YG +L P ++ I L + E + D+PS R + T Sbjct: 408 A--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSIRKTEIST 465 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + G ++++ G+ +D+I +PLL IP LGALFR++ T P + Sbjct: 466 LATVKQGQSLLIGGVYRDEISHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRMFIIEPRI 525 Query: 419 V 419 V Sbjct: 526 V 526 >gi|33593235|ref|NP_880879.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|29603239|emb|CAC79584.1| bscC [Bordetella pertussis Tohama I] gi|33563610|emb|CAE42511.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|332382644|gb|AEE67491.1| putative type III secretion protein [Bordetella pertussis CS] Length = 600 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 86/246 (34%), Gaps = 11/246 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVS 240 + ++ L++ + ++ I +V D++ ++G G++S G Sbjct: 287 RALIEQLDVPSTL-IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPV 345 Query: 241 EGGDFSVK----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +G + G+ L ALE L++P++ A + Sbjct: 346 DGAAADLAPGTLGISVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIR 405 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 T+ +VT G L TP ++ ++ L I E + +P R Sbjct: 406 TLGERV--ATVTPVTVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRK 463 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 T + T+++ G ++ E +PLL IP LG LF + + E Sbjct: 464 SSISTLAVVGDEQTLLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFL 523 Query: 414 ATPFLV 419 P +V Sbjct: 524 IRPRVV 529 >gi|33596848|ref|NP_884491.1| putative type III secretion protein [Bordetella parapertussis 12822] gi|33573549|emb|CAE37540.1| putative type III secretion protein [Bordetella parapertussis] Length = 600 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 85/246 (34%), Gaps = 11/246 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVS 240 + ++ L++ + ++ I +V D++ ++G G++S G Sbjct: 287 RALIEQLDVPSTL-IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPV 345 Query: 241 EGGDF----SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +G G+ L ALE L++P++ A + Sbjct: 346 DGAAAELAPGTLGISVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIR 405 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 T+ +VT G L TP ++ ++ L I E + +P R Sbjct: 406 TLGERV--ATVTPVTVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRK 463 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 T + T+++ G ++ E +PLL IP LG LF + + E Sbjct: 464 SSISTLAVVGDEQTLLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFL 523 Query: 414 ATPFLV 419 P +V Sbjct: 524 IRPRVV 529 >gi|33599773|ref|NP_887333.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] gi|33567370|emb|CAE31283.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] Length = 545 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 98/281 (34%), Gaps = 41/281 (14%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------- 232 + ++++ Q+ ++ + ++ + + G ++ + A Sbjct: 265 AVEELIRRNQATIRRQIQVEAQLIDIELNDGFEFGVDWNLLTNHLSGRYGSGAITANTPA 324 Query: 233 -------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 + + + SF L+AL +++ L+ PT+ Sbjct: 325 GTQPGSGLLPRSINIPAQVIGSAAGVGGGIGFANDSFSVALNALRSFGSVKVLSNPTVRV 384 Query: 280 ISGQSASFTSGGQHLYKTVSSST------------GATSVTTHDYGVVLHFTPTVLSPGR 327 +G A + G Y T S+T + GVV+ P + GR Sbjct: 385 RNGVPAYLSVGANVRYVTEISTTFNNIGGGSSNSSSDVQTDSLFSGVVVGVAPFIHEDGR 444 Query: 328 IGLRIQTEVSEP---------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 + L + ++ V N+ +P + TT+ L +G T+VL GL+ Sbjct: 445 VELFVHPMQTQVQPQSLALVDVGNGNSVTLPIINTKSITTTLNLNNGDTVVLGGLIDQQF 504 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G+P LS IP G LF N + + E+ I ++ Sbjct: 505 TNANKGLPGLSDIPGAGVLFDNRSDSHKSRELVIILRVRVI 545 >gi|33600622|ref|NP_888182.1| putative type III secretion protein [Bordetella bronchiseptica RB50] gi|33568221|emb|CAE32134.1| putative type III secretion protein [Bordetella bronchiseptica RB50] Length = 600 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 85/246 (34%), Gaps = 11/246 (4%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVS 240 + ++ L++ + ++ I +V D++ ++G G++S G Sbjct: 287 RALIEQLDVPSTL-IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPV 345 Query: 241 EGGDF----SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +G G+ L ALE L++P++ A + Sbjct: 346 DGAAAELAPGTLGISVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIR 405 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 T+ +VT G L TP ++ ++ L I E + +P R Sbjct: 406 TLGERV--ATVTPVTVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRK 463 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 T + T+++ G ++ E +PLL IP LG LF + + E Sbjct: 464 SSISTLAVVGDEQTLLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFL 523 Query: 414 ATPFLV 419 P +V Sbjct: 524 IRPRVV 529 >gi|255619353|ref|XP_002540016.1| General secretion pathway protein D precursor, putative [Ricinus communis] gi|223500090|gb|EEF22367.1| General secretion pathway protein D precursor, putative [Ricinus communis] Length = 304 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 90/255 (35%), Gaps = 40/255 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------SITGSSSGPS 227 + V++ L++ QV ++ + EV + G Q + S G S Sbjct: 50 RAVIDQLDVR-RAQVYIEALVVEVTSTDASEFGVQWVGLTGNNNSSYRVGGLQSFSLGGS 108 Query: 228 KSFAADFGGKFVSEGGDFS------------------VKGVLDRFSFETVLHALERATAI 269 + + + K V + HALE Sbjct: 109 NNNIVNLALAAATGISGSGSTTTGSSIPSPTGLSIGIFKQVNGELGLGAIAHALESTGHA 168 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTV 322 L+ P + + + A+ G T S +TGA+ +V D G++L P + Sbjct: 169 NILSTPNMITLDNELATIKVGQNIPIITGSFTTGASGASNPFQTVDRKDVGLLLKVRPQI 228 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G I L I E S V++ VR ++ V +G +VL GL+ DD + Sbjct: 229 SEGGTIKLAIYHENSGIDNSVSSASGIVTTVRAIESNVLADNGQIVVLGGLISDDESENN 288 Query: 383 EGIPLLSKIPILGAL 397 E + L IPILG L Sbjct: 289 EKVRGLGDIPILGNL 303 >gi|262394223|ref|YP_003286077.1| putative maturation protein [Vibrio sp. Ex25] gi|262337817|gb|ACY51612.1| putative maturation protein [Vibrio sp. Ex25] Length = 353 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 14/233 (6%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + QV ++ I E +++G + S +G F + + Sbjct: 131 RPQKQVFIEAVITETELGDSQEVGVNMDLALSEAG--------FVSQPTAIKKAVDNLLF 182 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TS 306 + F ++ A+ + + L+ P + + + T G + T S T Sbjct: 183 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 242 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 + D GV L P V+ + L+I + A D+ + R T V++ Sbjct: 243 IERKDVGVSLEVVPHVIGD-HVVLQIMQKSDSVTDSSIASDIIT-NTRTLQTVVKVKDRQ 300 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 TI L GL+ + + G+P+L +P+LGALFR+ + N + E+ + ++ Sbjct: 301 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 353 >gi|269105039|ref|ZP_06157734.1| type III secretion system outer membrane pore YscC [Photobacterium damselae subsp. damselae CIP 102761] gi|268160674|gb|EEZ39172.1| type III secretion system outer membrane pore YscC [Photobacterium damselae subsp. damselae CIP 102761] Length = 624 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 118/321 (36%), Gaps = 28/321 (8%) Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQS 171 ++ R ++ ++ ++ + + V +HG + + Sbjct: 218 VLSRVLSGVQTQIKATKESEETDINTAATTTKNVSVHGGASVEAEPGLNAIIVR------ 271 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSIT---GSSSGP 226 Q +K++ L+ + Q ++V +I ++ + L Q+G G++S Sbjct: 272 -DTQARLPLYRKLVAQLD---QPQSRIEVALSIVDISANDLSQLGVDWRAGIAVGNNSIL 327 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQ 283 D G V+ G + K +LD + + LE + + ++ PTL Sbjct: 328 DIKTTGDVDGGDVTLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENV 387 Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSE 338 A + K + A T YG +L P ++ I L + E Sbjct: 388 EAVLNNSSTFYVKLIGREIAALEKVT--YGTLLRIVPRIVGDRFVERPEINLSLHLEDGA 445 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + ++PS R + T + G ++++ G+ +D++ +PLL IP LGALF Sbjct: 446 QIPDGGVDNVPSIRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALF 505 Query: 399 RNSRFNREETEIFIAATPFLV 419 RN+ T P +V Sbjct: 506 RNTTDTTRRTVRMFIIEPRIV 526 >gi|328951048|ref|YP_004368383.1| type II and III secretion system protein [Marinithermus hydrothermalis DSM 14884] gi|328451372|gb|AEB12273.1| type II and III secretion system protein [Marinithermus hydrothermalis DSM 14884] Length = 523 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 92/248 (37%), Gaps = 23/248 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV LKV + EV + +G + S G + D G + F L Sbjct: 281 QQVQLKVRVQEVDSQVFNNLGLKW--DSLSGGNLIASVLDNGLNLI-----FDATRSLAS 333 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISG-------------QSASFTSGGQHLYKTVSS 300 + L ALE+ R +++ L + A +G + L Sbjct: 334 LNIVATLDALEKQNLARRVSDANLIIEDNFGASDEDLRQTGAKGAELKAGAKLLLPIRIG 393 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 G V D G+ L P + + +I L + T+ G + + + + Sbjct: 394 --GEIEVREFDVGLTLRLRPQITADRQILLEVFTQTGGDPQSGPEGSI-LIPQKSTLSKL 450 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G T+VL GL++ + + + +P L IPILG LFR + +TE+ + T +V Sbjct: 451 RIKDGQTVVLGGLIERTVNKSENKVPFLGDIPILGMLFRQTSNEVRDTELLVVITANIVD 510 Query: 421 PVAMRDLS 428 + S Sbjct: 511 NAPSAEAS 518 >gi|262195825|ref|YP_003267034.1| general secretion pathway protein D [Haliangium ochraceum DSM 14365] gi|262079172|gb|ACY15141.1| general secretion pathway protein D [Haliangium ochraceum DSM 14365] Length = 842 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 104/272 (38%), Gaps = 36/272 (13%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + + V+ L+ QV ++ I EV+ D + S GG Sbjct: 438 ALRDVIEKLDTP-RRQVFIEAMILEVQTDSG----LDLGASFHGGQLSDDGTLLLGGLQT 492 Query: 240 SE-----GGDFSVKGV-----------------LDRFSFETVLHALERATAIRTLAEPTL 277 S+ G + + SF + AL ++ + L+ P + Sbjct: 493 SDLQSIVPGTLAASSGLLGGVLGPLLNTQELLGVSIPSFGVLFQALATSSNVNVLSSPHI 552 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA---------TSVTTHDYGVVLHFTPTVLSPGRI 328 + + A + G Y++ S SV D + L TP + + + Sbjct: 553 VTTNNEEAEISVGQNIPYQSGLSGLPTAGTGVSFPVQSVQRQDVALTLKITPHINASDMV 612 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L I E+S+ AG PS+ R TTV + +IV+ GL+ D + + +PLL Sbjct: 613 TLEIDQEISDIASPDFAGLGPSWSKRTVKTTVVVRDQQSIVIGGLMSDRMTYNESKVPLL 672 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P+LG F+ + + +T + I TP+++K Sbjct: 673 GDLPLLGYFFKFTERQKSKTNLLILLTPYVIK 704 >gi|91782693|ref|YP_557899.1| putative type III secretion hypersensitivity response secretion protein, HrcC/HrpA1- like [Burkholderia xenovorans LB400] gi|91686647|gb|ABE29847.1| Putative type III secretion hypersensitivity response secretion protein, HrcC/HrpA1- like protein [Burkholderia xenovorans LB400] Length = 736 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 15/238 (6%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKS------FAADFGGKFVSEGGDFSVK 248 V + + +V + +G G SG S + F A ++ Sbjct: 354 VEIDAVVIDVSSSAARSLGVAWGGSNGRISGSSGTINSPLTFGAPALATAAGMASGLNLA 413 Query: 249 GVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 ++ + +HALE A R L+ P + ++ A TS + + Sbjct: 414 TLVGNSAQYLFAQIHALEDAGQARVLSSPQVLTLNNMEAVLTSHSSVYVRVAGNQD--VD 471 Query: 307 VTTHDYGVVLHFTPTV----LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 + D G+ L TP++ I L IQ + ++ +P T + Sbjct: 472 LYNIDTGLTLKVTPSIESAADPRRNIRLNIQIDDGAFNTSMSVDGIPKVDNHSIVTQAIV 531 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G ++++ G + + +P+L +P LG LFR+++ RE E I TP L + Sbjct: 532 RDGESLLVGGYQYERSESTTSKVPVLGDVPYLGVLFRDTQTTRERLERLILITPRLKR 589 >gi|325275757|ref|ZP_08141634.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51] gi|324099108|gb|EGB97077.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51] Length = 310 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 65/293 (22%), Positives = 116/293 (39%), Gaps = 31/293 (10%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I I L++PV ++ V V +P ADV R + + G ++++ Sbjct: 39 IEIDQGLQQELRLPVAIERVAVGEPKVADVQASGERGVVITAVGQGNTSLMMWTACTPSP 98 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 + + R A +M F+ + ++ +Q R VE+ + Sbjct: 99 HKAMVFV-RGRASADMAQDSFLPSQDTQL------------PSQVQADIRFVEVRRSKYK 145 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 ++G + S+ ++ V + G+ +G + Sbjct: 146 EAGARLFFKGSNNSLIGSPGTVPNTVVRPD------------------YVPGAQTGENPI 187 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 AD + F++ F +++ALE + TLA P+LT +SGQ+ASF + Sbjct: 188 AYADVRPGIPLDNSVFNIVWGGGSSRFLAMINALENSGFAYTLARPSLTVLSGQTASFLA 247 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 GG+ S+ + S+ ++GV L TPTV+S GRI L++ EVSE Sbjct: 248 GGEIPIPVPSAGSDNVSIEYKEFGVRLALTPTVISQGRITLKVAPEVSELDYS 300 >gi|83591449|ref|YP_425201.1| type II and III secretion system protein [Rhodospirillum rubrum ATCC 11170] gi|83574363|gb|ABC20914.1| type II and III secretion system protein [Rhodospirillum rubrum ATCC 11170] Length = 547 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 101/254 (39%), Gaps = 27/254 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----GPSKSFAADFGGKFVSEGGDFSV 247 QV ++ I EV + G + P + + Sbjct: 269 ATQVLIEAKIVEVTLKDQYRGGIDWKVLTDGGEFLLDIPGAAGVVAPPLTDAAATLSLGT 328 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------- 298 + L ++ ++ A+RTL+ P LT ++ Q+A +Y V Sbjct: 329 RATLGPVELSALVQFIKTFGAVRTLSSPRLTVMNNQTAVLKVAENEVYFVVDVDTVTSDG 388 Query: 299 -SSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNA----------- 345 + +T ++ + T G+V+ P+V G R+ L ++ +S V Sbjct: 389 VTQTTYSSEINTVPIGLVMTVQPSVEPGGGRVTLGLRPTISRIADRVADPAVSLQNLSVQ 448 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P VR+ D+ V + +G +V+ GL+++ + + +EG+P L +P++G FR+ + Sbjct: 449 SLIPVVEVRELDSVVTIDNGAVVVMGGLMQERMGRDEEGVPGLGDVPLIGRAFRHDSADT 508 Query: 406 EETEIFIAATPFLV 419 + E+ + ++ Sbjct: 509 DVVELVVLLRATVI 522 >gi|296123921|ref|YP_003631699.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] gi|296016261|gb|ADG69500.1| type II and III secretion system protein [Planctomyces limnophilus DSM 3776] Length = 1469 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 63/371 (16%), Positives = 136/371 (36%), Gaps = 35/371 (9%) Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 +P V R + + G ++++ D I R + L+ R+ I Sbjct: 963 NPNLISTVEQLEREVVVVP-ETGTNSLLI----SATPRYYD-EITRLVMELDQAPRQVII 1016 Query: 133 DSNI---RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 + I ++ V + V G+ ++ + V+ T + +++++V++ Sbjct: 1017 QALIVEVTLDNVDEFGVELGLQDSVLFDRSVVDDLVTLTETTTSPNGTQTTTQRVVSQTA 1076 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 G + ++ SS S+ ++ G+ ++ G + Sbjct: 1077 APG------------FLFNNPNTPLGNNTTINPSSVGSQGLSSFSLGRVNNDLGYGGLVL 1124 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGAT 305 S ++ AL ++ L+ P + + Q A G Q + ++ Sbjct: 1125 SAGSESVNVLIRALASRRRLQVLSRPQIRTLDNQQAQIQVGQQVPIVDGVQIGATGLANP 1184 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRK 355 + G++L TP + G I + + E S+ N + P + Sbjct: 1185 QIRQDQAGIILTVTPRISPDGTIVMELIAEKSQFRGNGVPIFTDATNGNVIESPIKDISA 1244 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A T + +P+G T+V+ G++ + + +P + IPI+G LFR + TE+ I T Sbjct: 1245 ARTAISVPNGQTVVMGGMITATDETSERKVPFIGDIPIVGHLFRYDSKSHVRTELLIFLT 1304 Query: 416 PFLVKPVAMRD 426 P ++ A + Sbjct: 1305 PRVISSDADSE 1315 >gi|225165932|ref|ZP_03727695.1| type II and III secretion system protein [Opitutaceae bacterium TAV2] gi|224799824|gb|EEG18290.1| type II and III secretion system protein [Opitutaceae bacterium TAV2] Length = 809 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 100/270 (37%), Gaps = 13/270 (4%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 ++++++ +++ QV ++V IAEV G +G FAA G ++ Sbjct: 427 TRELIDKIDVLLA-QVRIEVVIAEVSLSDEATSGIDTLGLRIENGVLTGFAASGPGGKIA 485 Query: 241 EGGDFSVKGVLDRFSFETVLHALER--ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + + V+ L+ PT+ Q A G + T Sbjct: 486 GIDNGTFFQTAKENALAGVISLSTTPRKNNTNILSVPTIVTSHNQEAEVFIGEKRPIITG 545 Query: 299 SSSTGAT-----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSY 351 +++T + +T G+ L TP + G + ++++ +V + + ++ + P Sbjct: 546 TTTTSDSLSTSSQITQQQIGITLTVTPLIGPNGSVQMQLEQKVEDISGFVTIDGNEQPIT 605 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R A + + SG +VL G+ + L IP +G LF + TEI Sbjct: 606 TDRNAKSFLSARSGDIVVLGGMQRTKKGNTTSR---LGPIPWIGDLFGKRSKTDQRTEIL 662 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 P ++ + ++ A+ Sbjct: 663 FFIRPTVLTNTQLDNVEAYQQVDRAPHAAE 692 >gi|304321270|ref|YP_003854913.1| general secretion pathway protein D [Parvularcula bermudensis HTCC2503] gi|303300172|gb|ADM09771.1| general secretion pathway protein D [Parvularcula bermudensis HTCC2503] Length = 736 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 12/220 (5%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTH 310 + +L AL+ + L P++ + + + G + T + G + Sbjct: 484 YGVLLSALQSDSQSNVLQVPSIVLLDNEEGTIQVGQEVPVVTGEAVGSDFQGGFRQIERK 543 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + G +L P + + + L++ EVS P D TV G T+VL Sbjct: 544 NIGNILQVKPQITAGNTVQLKLNLEVSSLGAFAPDAQGPITNESILDLTVSAEDGQTLVL 603 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LS 428 GL+ D +Q + +P+L IP+LG LF+ + +E+ + I P +++ D + Sbjct: 604 GGLVDKDRRQTESKVPVLGDIPLLGNLFKGQAQSDQESTLMIFIRPTILRDAQAADSVTA 663 Query: 429 RPDDHYSVED-----DAKAFFFNRVNKIYGPKEASEVEGQ 463 R D+ + + + + V + Y A V Q Sbjct: 664 RKYDYVRQQQMRRLREGQRPLLDTVVQDYIGPGADYVPSQ 703 >gi|304415496|ref|ZP_07396135.1| type III outer membrane secretin precursor [Candidatus Regiella insecticola LSR1] gi|304282655|gb|EFL91179.1| type III outer membrane secretin precursor [Candidatus Regiella insecticola LSR1] Length = 493 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 61/311 (19%), Positives = 123/311 (39%), Gaps = 26/311 (8%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR--TIQDSQRAVELSETFLSQSGRNQYA 177 + L LR A + + V + + + + + Q AV + + Q Sbjct: 199 LPGLVTVLREMSAGNTLPVNTANGGKIENTSLPLFSADPRQNAVVVRDR--------QAN 250 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 K ++N L++ + + VTI +V + Q+G + + S +G SF + Sbjct: 251 MPIYKSLINQLDLR-PIGIEISVTIIDVDAGNINQLGIDWTSSTSLAGNKVSFRSGL--- 306 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + D + D +F L AL++ + R L+ P++ ++ A + T Sbjct: 307 -IPGSNDSFSSVIGDTDNFMVRLKALQQNSRARVLSRPSVVTLNNIPAVLD--KNITFYT 363 Query: 298 VSSSTGATSVTTHDYGVVLHFTPT-VLSPGR--IGLRIQTEVSEPVIGVNAGD-MPSYRV 353 + + G +L TP + GR + L + + NA + +P + Sbjct: 364 KLQGDKVAKLESITSGSLLRVTPRMINDNGRHEVLLNLNIKDGVQKSSNNATEPLPQVQD 423 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + T L G +++L G ++D + ++ +P L IP++G LFR++ + Sbjct: 424 SQISTQATLKIGQSLLLGGFIQDRQSEAEKKVPFLGDIPVIGELFRSTDKHSHS-----V 478 Query: 414 ATPFLVKPVAM 424 FL+K V + Sbjct: 479 VRLFLIKAVPV 489 >gi|167842291|ref|ZP_02468975.1| type III secretion system EscC protein [Burkholderia thailandensis MSMB43] Length = 508 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 11/223 (4%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + V I +V L +G S + G S SF + GG+ + G FS V + Sbjct: 285 VEISVAIIDVNAQDLSMLGVDWSASARIGGGSVSF--NSGGE--PDSGSFSTV-VSNTGQ 339 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L ALE+ + L+ P++ + A + T S+ + + G + Sbjct: 340 FMVRLSALEQNAKAQILSRPSVVTLDNMQAVLD--RNITFYTKVSAERVAKLESISTGSL 397 Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLA 371 L TP V+ I L + + ++ + +P + T L G ++L Sbjct: 398 LRVTPRVIGDPGKQEIMLTLMVQDGRQTGALSKQEPLPQTLNSEIATHALLKEGQALLLG 457 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 G ++D++ + + IPLL IP+LG LF+ N+ T Sbjct: 458 GFVQDELSEGERKIPLLGDIPLLGNLFKMRHKNQRHTVRLFLI 500 >gi|289524045|ref|ZP_06440899.1| putative bacterial type II/III secretion system short domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502701|gb|EFD23865.1| putative bacterial type II/III secretion system short domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 589 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 61/307 (19%), Positives = 102/307 (33%), Gaps = 44/307 (14%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 D + L+ I +N+ V+ TV + G ++D ++ ++ Sbjct: 273 ADPKQVPAILQSLIGITNVAVDERLRTVYVTGRPDNLRDVEQLLQ--------------- 317 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD-----------ILKQIGFQHSITGSSSGP 226 ++ G QV L+ + EVR + K F + G S G Sbjct: 318 ---------RIDHPG-RQVMLQARLIEVRDTGRKELESIVDAVYKHWWFSYGAGGGSIGY 367 Query: 227 SKS-----FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S F D +G D + + L + LA P++ + Sbjct: 368 VDSSEPENFDPDEDRPTSPQGVDLVDITRGTLRILDVGIRNLVESNKADILASPSVVTVD 427 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV- 340 GQ AS Y + G + G L FTP V + + + E V Sbjct: 428 GQKASIALTTNIKYISERDDAGNPVYSEERVGPKLDFTPIVGRDDTVTINVAISTGEVVE 487 Query: 341 --IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G ++P R+ T V + +G V+ GL IP+L+ IP+LG +F Sbjct: 488 WRPGGMGEEVPVTSSREVTTMVRVRNGEPFVIGGLFDRRKTDTVSKIPVLADIPLLGEIF 547 Query: 399 RNSRFNR 405 + Sbjct: 548 KTRTKRD 554 >gi|62185517|ref|YP_220302.1| general secretion pathway protein D [Chlamydophila abortus S26/3] gi|62148584|emb|CAH64356.1| probable general secretion pathway protein D [Chlamydophila abortus S26/3] Length = 753 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 67/353 (18%), Positives = 129/353 (36%), Gaps = 24/353 (6%) Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 S I ++ S V G V+ + S+T + A K ++ L++ + Sbjct: 407 STISIDTASVGSVKEGSVK----YGNFIADSKTGTLIMVVEKEALPRIKMLLKKLDVP-K 461 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 V ++V + E + ++ G G S + + E G Sbjct: 462 KMVRIEVLLFERKLSNQRKAGLNLLRLGEEVCKKTSSTISWTSSGILEFLFKGNTGSSVV 521 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 ++ L +R A P++ ++ A + VS+ YG Sbjct: 522 PGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEMSI-AVSADKEKAQYNRAQYG 580 Query: 314 VVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 +++ P + G+ + ++T+++ G NA + P R V +P G T+++ Sbjct: 581 IMIKMLPVINVGDEDGKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVII 640 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429 GL ++GIP L +IP +G LF + +TE+F+ TP ++ P+ ++ Sbjct: 641 GGLRCKHASDSQDGIPFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILDNPIEKKERHE 700 Query: 430 PDDHYSVEDD----AKAFFFNRVNKIYGPKE----------ASEVEGQNYKGA 468 S + +A F K+ AS+V+G Y G Sbjct: 701 EAILSSRPGENTEFRQALFAGEEAAKAAHKKLEFISAIELPASQVQGLEYDGR 753 >gi|296162480|ref|ZP_06845271.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. Ch1-1] gi|295887293|gb|EFG67120.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. Ch1-1] Length = 709 Score = 140 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 87/238 (36%), Gaps = 15/238 (6%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------SFAADFGGKFVSEGGDFSVK 248 V + + +V + +G + + +F A ++ Sbjct: 354 VEIDAVVIDVSSSAARSLGVAWGGSNGRVSAASGTINSPLTFGAPALATAAGVASGLNLA 413 Query: 249 GVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 ++ + +HALE A R L+ P + ++ A TS + + Sbjct: 414 TLVGNSAQYLFAQIHALEDAGQARVLSSPQVLTLNNMEAVLTSHSSVYVRVAGNQD--VD 471 Query: 307 VTTHDYGVVLHFTPTVL----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 + D G+ L TP++ I L IQ + ++ +P T + Sbjct: 472 LYNIDTGLTLKVTPSIESAAEPRRNIRLNIQIDDGAFNTSMSVDGIPKVDNHSIVTQAIV 531 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G ++++ G + + +P+L +P +GALFR+++ RE E I TP L + Sbjct: 532 RDGESLLVGGYQYERSESTTSKVPVLGDVPYVGALFRDTQTTRERLERLILITPRLKR 589 >gi|323143301|ref|ZP_08077992.1| type III secretion outer membrane pore, YscC/HrcC family [Succinatimonas hippei YIT 12066] gi|322416918|gb|EFY07561.1| type III secretion outer membrane pore, YscC/HrcC family [Succinatimonas hippei YIT 12066] Length = 610 Score = 140 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 28/298 (9%) Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-----TGSSSGPSKSF 230 Y + V+ L++ V L I +V +G +G Sbjct: 291 YRMPYYEDVIKELDVPVRL-VELHAAIVDVDVGAADSLGIDWQAARRTGNWQIAGGVGHQ 349 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 ++ G + GG FS D+ +F ++ LE RTL P++ + A+ Sbjct: 350 ISNSGSLNPNGGGIFSTVFSTDQSAFMMQVNMLEEDNKARTLGRPSVLTLDNVEATLEDT 409 Query: 291 GQHLYKTVSSSTGATSVTTHDY--GVVLHFTPTVLS--PGR---IGLRIQTEVSEPVIGV 343 + K G S + G +L TP ++ G I + I + ++ Sbjct: 410 TTNYVKVA----GNESSDLFEVVSGTILRVTPHIIDSHDGSAPYIQMVISLQTNQDTDQS 465 Query: 344 NAGD-----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + +P + +T + G +++L G ++ + GIP+L IP Sbjct: 466 QSYTVSSDAQGADERIPVIKKTTINTQALVQQGQSLLLGGYYMENHRNSDNGIPVLKDIP 525 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 ++G LF +S + E + TP ++ + S DD + +A + R K Sbjct: 526 LIGGLFGSSSDEATQRERLLLITPRILDLDDINLPSGLDDKSFAKSPTQADYSMRETK 583 >gi|310779606|ref|YP_003967939.1| type II and III secretion system protein [Ilyobacter polytropus DSM 2926] gi|309748929|gb|ADO83591.1| type II and III secretion system protein [Ilyobacter polytropus DSM 2926] Length = 594 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 69/387 (17%), Positives = 144/387 (37%), Gaps = 40/387 (10%) Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 G + + + ++ ++ +TLR + D V V + Sbjct: 214 GPNDRMLGSIRDDSGSELMTTRVTLRHALPDDVKTV------------VESAMREVEVSS 261 Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--- 219 + + +KK++ L++ + QV + + +V+ ++ + +GF + Sbjct: 262 FPKLNMIILKGTSSNILPAKKLIEDLDLP-QKQVRITAQVLDVKDNLFETLGFDWAYDSN 320 Query: 220 -----TGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 T +SG + D G G S +F+ ++ L+ + A Sbjct: 321 GTSTYTDGTSGTFLGTSTDVGIGTGYSSAIEFAQSFNGGDDVLGVSINMLQSDQDMIISA 380 Query: 274 EPTLTAISGQSASFTSGGQHL--YKTVSSSTGATSVT--THDYGVVLHFTPTV----LSP 325 P++ ++G+ A F++ + + Y+ G T+ T + G+V + P + Sbjct: 381 VPSVVVLNGEEAEFSTTEEVIVGYEEEEDDDGNTTTTPMFEEAGLVFNVKPIIRTGADGG 440 Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLKD 376 I L + TEVS + + D + R DTTV + SG ++ + G+ + Sbjct: 441 DTILLTLSTEVSNFNLVSTSADSDATTYNEDGGSKASRNIDTTVSVKSGESLFIGGMKRA 500 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD-LSRPDDHYS 435 D+ + IPLL +P +G LFRN E +I+I ++ D + + + Sbjct: 501 DVSNVTSKIPLLGDLPFVGFLFRNEAVESELRDIYIKIRAEIITDENREDQIDLKGFNRA 560 Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEG 462 + + N E ++ G Sbjct: 561 EIHTMDSDILDHRNIYPAVPETPQILG 587 >gi|291615048|ref|YP_003525205.1| type II and III secretion system protein [Sideroxydans lithotrophicus ES-1] gi|291585160|gb|ADE12818.1| type II and III secretion system protein [Sideroxydans lithotrophicus ES-1] Length = 560 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 93/290 (32%), Gaps = 63/290 (21%) Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-- 246 I+ + QV L+ I EV+ + Q G + + + G +S GG + Sbjct: 255 QISIDRQVILEAKIVEVQLNDSFQSGVNWGVFKNGPNSHVTAGIGSPGSTLSPGGAVAST 314 Query: 247 -------------------------------VKGVLDRFSFETVLHALERATAIRTLAEP 275 +F +L+ LE + L+ P Sbjct: 315 LANTALTSTPGASLLPTATSLLPSSAVAGSLFGLAFQTSNFAALLNFLETQGNVHVLSSP 374 Query: 276 TLTAISGQSASFTSGGQHLYKT-VSSSTGATS----------VTTHDYGVVLHFTPTVLS 324 + ++ Q A G + T V+ T AT+ V G+ L TP + Sbjct: 375 RIATLNNQKAVLKVGTDEFFVTEVTGGTQATTAIAGTSPTVKVQPFFSGIALDVTPVIDE 434 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYR--------------VRKADTTVELPSGGTIVL 370 I L + VS D+ + V + D+ V G + + Sbjct: 435 NNEIILHVHPSVSTVTTVNKTVDLGTSNGVSNIFNLPLASSSVSETDSIVRARDGQIVAI 494 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GL++ G+P L K ++F + + E+ E+ I P +V Sbjct: 495 GGLMRQAEVNDDSGLPGLPK-----SIFGQTSKHTEKRELVILLKPTVVD 539 >gi|257092259|ref|YP_003165900.1| type II and III secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044783|gb|ACV33971.1| type II and III secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 624 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 59/375 (15%), Positives = 132/375 (35%), Gaps = 46/375 (12%) Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + ++ L T+ + + ++ TVV T +++ + E + Sbjct: 248 VAARVSQLAQTIAG--SPNPATLQNTGATVVKR---MTYREAASVIANPEGGVITVRATS 302 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 + ++ ++ + + QV ++ TI EV Q G Q + S + S + Sbjct: 303 RQHEKVQEFLDRVMSSARRQVLIEATIVEVTLSDGYQQGIQWNRLTSGTEYSVTKPTLTT 362 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + ++ S + L ++ L+ P L ++ Q+A+ +Y Sbjct: 363 NVQNAVTPYVIKYSNINPASLLATVELLRLFGTVKVLSSPKLAVLNNQTATLRVSEDFVY 422 Query: 296 KTV---------------------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 +V S+ T+ + G + T + G + L ++ Sbjct: 423 FSVKQDAASAVGVVVGGAAAASGPVSNPTTTTPQSVSIGFFMSLTAQISDSGTVTLNVRP 482 Query: 335 EVSEP---------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 +S +P R R+ ++ + + SG VL GL++D I Sbjct: 483 SISFIADLKQDPNPGLVNPKTGNTIPNLVPQIRTREIESMLRVESGDIAVLGGLMEDRIG 542 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 +P L IP +G +F N + ++E+ + P +++ ++ + + D Sbjct: 543 NTVGRLPGLGDIPFVGEVFNNRGNSSSKSELVVLLRPTVIRDASIDGDFSSFREFLPKKD 602 Query: 440 AKAFFFNRVNKIYGP 454 F R +++Y P Sbjct: 603 -----FFRTDQVYRP 612 >gi|37520489|ref|NP_923866.1| hypothetical protein gll0920 [Gloeobacter violaceus PCC 7421] gi|35211483|dbj|BAC88861.1| gll0920 [Gloeobacter violaceus PCC 7421] Length = 632 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 99/249 (39%), Gaps = 15/249 (6%) Query: 194 DQVTLKVTIAEVRRDILKQIG-FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV +V I E+ +++ + +GS+ P + GG F + + Sbjct: 382 RQVVFEVKIVELSDAGSRELNALRTIQSGSAVSPGNTAPLSLGGLFSPPTSFATFNDIAR 441 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH------LYKTVSSSTGATS 306 V++ L R + + L I+GQ AS L ++ T+ Sbjct: 442 AI---VVINGLITENKARVVTDTKLNTITGQKASIDVQTDINLILNQLTNVSGATVNNTT 498 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVE 361 ++T G V+ TPTV + G + + E S P P+ RK + Sbjct: 499 LSTLRAGTVVELTPTVQADGNVLAELSVESSVPQGTTTLTSSGTTVPPNIARRKVKNIIL 558 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G T+ + GL++ +++ +P IP++G LF N+ + E++E+ + TP + Sbjct: 559 VKDGQTLEIGGLIQTTNREVITRVPFFGYIPLIGQLFSNTNVSLEQSELVVFITPRVRDV 618 Query: 422 VAMRDLSRP 430 + D P Sbjct: 619 QPLPDTKLP 627 >gi|237753431|ref|ZP_04583911.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229375698|gb|EEO25789.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 487 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 48/299 (16%), Positives = 107/299 (35%), Gaps = 37/299 (12%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------- 217 ++ + + + L+ + QV + V I VR + +K +G Sbjct: 192 DKKSLQKVESYIEALHKRLQKQVLIDVQILSVRHNNVKTMGINWDSLYNLQNLMIPPFSE 251 Query: 218 -SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 + G + + G + + S ++ L+ +++++ P Sbjct: 252 SATLGGNGEIGSTSGISITGGSKGSSVQYGLNIFSAGLSLNRIVEFLKGYGEVQSISNPK 311 Query: 277 LTAISGQSASFTSGGQHLYK----------TVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + ++ Q A + G YK + + + GV+L TP V Sbjct: 312 VLTLNNQPAMISVGDILRYKKSNIYQNTNAQTTLTNTNNEYPSIFAGVLLDITPLVFED- 370 Query: 327 RIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I L++ +++ + P+ + + V++ + ++L GL+ + + Sbjct: 371 SIMLKVNPSITKTKDMQTKIAASAFDAPPNLTTNQLSSIVKVKNNQKVILGGLIAQNTAK 430 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 IPLL IP++ LF + + EI TP +++ +LS Y++ D Sbjct: 431 ESNKIPLLGDIPLIKPLFSYTHDSISTEEIVFIITPRIIE---EEELSLAKLGYTLIGD 486 >gi|291297113|ref|YP_003508511.1| type II and III secretion system protein [Meiothermus ruber DSM 1279] gi|290472072|gb|ADD29491.1| type II and III secretion system protein [Meiothermus ruber DSM 1279] Length = 509 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 69/350 (19%), Positives = 127/350 (36%), Gaps = 56/350 (16%) Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 I + R +++ A S+ R ++D + G T Q + Q+ Sbjct: 179 RIDVPRATTATIPVVQKSFALSHARATELADVL---GKAITAQAQGQTTPAQGQGQGQAQ 235 Query: 173 RNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIG 214 ++ N L + G QV L++ + V ++++ +G Sbjct: 236 PAPQVTVVAEPRTNTLIVTGTAEQIALAERLIPNLDRPVQQVQLQIRVQAVSGEVIRNLG 295 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGD--FSVKGVLDRFSFETVLHALERATAIRTL 272 + + F+S G + F L + VL ALE+ R L Sbjct: 296 IKW---------ETVSGGNLIASFLSTGLNLIFDATRSLASLNIRAVLDALEKQQLSRRL 346 Query: 273 AEPTLTAISG-------------QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 ++ + + A GG+ L +V DYG+++ Sbjct: 347 SDANVLVEDNYGADTSDLRATGAKGAEIKVGGRLLIPITIGD--QITVREFDYGLLVRVR 404 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR----KADTTVELPSGGTIVLAGLLK 375 P + + G I L + T+ G + D P+ +R + + + G T+VL GL++ Sbjct: 405 PQISTDGNILLEVFTQ-----TGGDPADGPAGSIRIPQQSTLSKLRIRDGQTVVLGGLIQ 459 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + IPLL IP+LG LF+ + ++ E+ + T +VK A R Sbjct: 460 KVTDTSETKIPLLGDIPLLGELFKQRTSSIKDDELIVIITGNIVKDSAQR 509 >gi|89111142|dbj|BAE80232.1| HrcC [Acidovorax avenae subsp. avenae] Length = 683 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 115/295 (38%), Gaps = 18/295 (6%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYAN-------SSSKKVMNLLNIAGEDQVTLKVTIAE 204 T + +A E F + G N + + +++ L+ V L+ TI E Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMAEYESLIHRLD-QKPQLVELEATIIE 456 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V D + +G S+ +S S A + G S S + ++ALE Sbjct: 457 VNSDSVDALGVNWSLRAGTS----SIATNLPGP--STPAALSTIVLDAGRHLLANVNALE 510 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 R L++P++ ++ ++A + V+ + A + G +L TP V + Sbjct: 511 AQGKARILSKPSVLGVANRAAVMRE-KRVATVRVAGNLEANLFQ-IEAGTLLQMTPQVTA 568 Query: 325 -PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G+ +++ + + N D +P + + T + G ++++ G+ + Sbjct: 569 VEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQD 628 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +P LSK+P++G +FRN+ TE TP ++ A +S Sbjct: 629 NAVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683 >gi|320107862|ref|YP_004183452.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] gi|319926383|gb|ADV83458.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] Length = 810 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 61/323 (18%), Positives = 113/323 (34%), Gaps = 25/323 (7%) Query: 117 ERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + D + LR + + + + + +V+ + ++ ++ + + + Sbjct: 287 QNDANEVVTALRNLLDPSTKVFLLASQNAIVIRATPAELVLVEKLIDDFDRIRPEVVVDV 346 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 S+ + L I S + SS+ S + Sbjct: 347 AVLEVSRDLERNLGITLPT---------SFSLSAQASNANSSSSSSSSTTSSSTSGLTLN 397 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G +F+V ++AL + R L P + A GQ A+ G + Sbjct: 398 TLANLNGTNFAVT------LSSASVNALLSDSDTRVLQNPRVRASDGQQATLKIGSKIPV 451 Query: 296 KTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 T S+++ T T D GV + TPTV G++ L+++ EVS + Sbjct: 452 ATGSTTSTLTSTATATTQFTYVDVGVNIDMTPTVHLDGQVSLKMKIEVSSQTGTTTISGV 511 Query: 349 --PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 P R ++L G +LAGLL+ + G P L +IP L F + + Sbjct: 512 SEPIISQRVVQQVIQLKDGEPSILAGLLQQSDTKSVSGTPGLGEIPFLKYFFSSQDKKQS 571 Query: 407 ETEIFIAATPFLVKPVAMRDLSR 429 EI P +V+ + D + Sbjct: 572 SDEIVFLLIPHIVRESPLTDANT 594 >gi|329943286|ref|ZP_08292060.1| bacterial type II and III secretion system family protein [Chlamydophila psittaci Cal10] gi|332287864|ref|YP_004422765.1| putative general secretion pathway protein D [Chlamydophila psittaci 6BC] gi|313848436|emb|CBY17440.1| probable general secretion pathway protein D [Chlamydophila psittaci RD1] gi|325507393|gb|ADZ19031.1| putative general secretion pathway protein D [Chlamydophila psittaci 6BC] gi|328814833|gb|EGF84823.1| bacterial type II and III secretion system family protein [Chlamydophila psittaci Cal10] gi|328915126|gb|AEB55959.1| general secretion pathway protein D [Chlamydophila psittaci 6BC] Length = 753 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 69/363 (19%), Positives = 131/363 (36%), Gaps = 26/363 (7%) Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 E LR + +I V V G V+ + S+T + A K Sbjct: 399 EAILREAASTISIDTTSVGS--VKEGSVK----YGNFIADSKTGTLIMVVEKEALPRIKM 452 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ L++ + V ++V + E + ++ G G S A + + E Sbjct: 453 LLKKLDVP-KKMVRIEVLLFERKLSSQRKAGLNLLRLGEEVCKKSSSAISWTSSGILEFL 511 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 G ++ L +R A P++ ++ A + VS+ Sbjct: 512 FKGNTGASLVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEMSI-AVSADKE 570 Query: 304 ATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 YG+++ P + G+ + ++T+++ G NA + P R V Sbjct: 571 KAQYNRAQYGIMIKMLPVINVGDEDGKSYITLETDITFDTTGKNANERPDVTRRNITNKV 630 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P G T+++ GL ++GIP L +IP +G LF + +TE+F+ TP ++ Sbjct: 631 RIPDGETVIIGGLRCKHASDSQDGIPFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILD 690 Query: 421 -PVAMRDLSRPDDHYSVEDD----AKAFFFNRVNKIYGPKE----------ASEVEGQNY 465 P+ ++ S + +A K+ AS+V+G Y Sbjct: 691 NPIEKKERHEEAILSSRPGENTEFRQALLAGEEAAKAAHKKLELISAIELPASQVQGLEY 750 Query: 466 KGA 468 G Sbjct: 751 DGR 753 >gi|329901079|ref|ZP_08272701.1| Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) [Oxalobacteraceae bacterium IMCC9480] gi|327549244|gb|EGF33826.1| Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) [Oxalobacteraceae bacterium IMCC9480] Length = 432 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 66/357 (18%), Positives = 128/357 (35%), Gaps = 41/357 (11%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 + D + + R + + I D+ +++ + S + R Y Sbjct: 16 DGDTDEFKRSSRSKMPNVRI-------------------DADQSLNAIIIYDSGNKRTMY 56 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFG 235 + ++ L+I Q+ ++ I ++ R L Q+G + T GS S + D Sbjct: 57 -----QALITELDI-EPQQIEIEALIVDIDRSQLNQLGAEWGFTAGSVSATFNGMSTDSK 110 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G + G + + + +F L+A+E R LA+ T++ + +A Sbjct: 111 GASLPISGSTLL--IKNAANFYAKLNAMENKGDARILAKQTISTLENIAAVLDLSQSRYL 168 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYR 352 V + + G +L TP ++ G R+ L I E + +A + Sbjct: 169 PLVGERV--VDLANVNVGTMLKVTPRIVREGPLTRVRLDINIE--DGAFSADAASSTNVT 224 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 T + T+++ G + Q ++ IP+L IP+ G LF+N+ + E Sbjct: 225 RSTITTQAIIEPQHTLLIGGYHSEAKTQSRQKIPVLGDIPVFGGLFQNNSDSVNNRERLF 284 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469 TP + + L Y E + R ++ P S Q +G Sbjct: 285 LITPRI---SGLTGLQANRQSYLAEKAREILQAERALQLSPP---SPPASQQTRGTA 335 >gi|27550050|gb|AAO18033.1| LscC [Photorhabdus luminescens] Length = 621 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 102/251 (40%), Gaps = 18/251 (7%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-------SKSFAADFGG 236 ++N+L+ + + ++I ++ + L ++G + G ++GP + + G Sbjct: 278 LINVLDKPSAR-IEVALSIVDIDANNLSELGVDWQV-GINTGPRHIIDITTSAGEKKEGK 335 Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + G ++ ++DR + + LE + + ++ PTL A + + Sbjct: 336 EKGESIGSAALGSLVDRRGLDYLLAKITLLESKGSAQVISRPTLLTQENTQAVIDNNETY 395 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MP 349 K + + + YG +L P V+ G I L + E + D +P Sbjct: 396 YVKV--NGERVAELKSLTYGTMLRMIPRVIQVGDSPEISLDLHIEDGNQKPNSSGRDGIP 453 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + DT + G ++++ G+ +D++ Q+ +P L IP LG LFRN+ + Sbjct: 454 TISRTVVDTVARVGHGQSLLIGGIYRDEMSQITRKVPFLGDIPYLGVLFRNTSEQVRRSV 513 Query: 410 IFIAATPFLVK 420 P L+ Sbjct: 514 RLFIIEPRLID 524 >gi|302877407|ref|YP_003845971.1| type IV pilus secretin PilQ [Gallionella capsiferriformans ES-2] gi|302580196|gb|ADL54207.1| type IV pilus secretin PilQ [Gallionella capsiferriformans ES-2] Length = 705 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 93/252 (36%), Gaps = 14/252 (5%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236 +K++ +++ QV ++ + +G + ++ + A Sbjct: 453 RKLLKQIDVP-VRQVMIEARFVSAGDSFARSLGGKLGYASPANAANGGAATTGAINGVNV 511 Query: 237 KFVSEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + +L F+ L+A E + +A P + AS SG Sbjct: 512 NLPNSLAGTGGGLLLSLFNPAATKVLTLELNASETDGITKNIASPRVVTADKTKASIKSG 571 Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 + Y + + + L TP + I + + S+ +G +PS Sbjct: 572 VEIPYTIAGTVGSPPTTAFKTAALSLDVTPRITPDNNINMTLVA--SQDTVGALYSGVPS 629 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T V + +GGT+V+ G+ D+ +PLL IP+LG +F+N + E+ Sbjct: 630 INSKMVTTEVLIENGGTVVVGGVFTQDVADTVNKVPLLGDIPVLGWMFKNKVKTDAKNEL 689 Query: 411 FIAATPFLVKPV 422 I TP +++ Sbjct: 690 LIFITPKIMQDS 701 >gi|71909017|ref|YP_286604.1| type II and III secretion system protein [Dechloromonas aromatica RCB] gi|71848638|gb|AAZ48134.1| type II and III secretion system protein [Dechloromonas aromatica RCB] Length = 594 Score = 140 bits (352), Expect = 7e-31, Method: Composition-based stats. Identities = 65/341 (19%), Positives = 133/341 (39%), Gaps = 40/341 (11%) Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 + + T+V H T +++ + +E+ + Q + ++ ++ + + Sbjct: 259 PAPSSASQAAGTTLVRH---STFREAASVIMNAESGVITVRATQKQHERIQEFLDRVGNS 315 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV ++ TI EV Q G T + G + SF D K + Sbjct: 316 ARRQVLIEATIVEVTLKDGYQQGINW--TQLARGGTFSFIGDALTKNATN------LTYT 367 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---- 307 ++ L+ + L+ P L+ ++ Q+A ++Y +V + T T+ Sbjct: 368 KGGDPNALVTMLDTFGTTKVLSSPRLSVMNNQTALLKVVENYVYFSVKADTTTTANVGTT 427 Query: 308 -------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----------AGDMP 349 + G+V+ TP + + L ++ ++ V + +P Sbjct: 428 TAYTTTPQSVSVGLVVSVTPQISDGDAVTLNVRPTITSVAREVQDPNPDLKKNSISNLVP 487 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R R+ ++ + + SG +L GL++D I + +PLL +IPI G L N ++TE Sbjct: 488 VIRTREIESIMRVASGNIAILGGLMEDKIDYQTQRVPLLGQIPIAGELVNNRNNAAQKTE 547 Query: 410 IFIAATPFLVKPVA-------MRDLSRPDDHYSVEDDAKAF 443 + I P ++K + MR D ++ +A+ F Sbjct: 548 LVIFLRPVVIKDASLEGDYANMRGFLPNDSFFAQPSEAQPF 588 >gi|89111175|dbj|BAE80264.1| HrcC [Acidovorax avenae subsp. avenae] Length = 683 Score = 140 bits (352), Expect = 7e-31, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 113/295 (38%), Gaps = 18/295 (6%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS-------KKVMNLLNIAGEDQVTLKVTIAE 204 T + +A E F + G N + ++ L+ V L+ TI E Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLD-QKPQLVELEATIIE 456 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V D + +G S+ +S S A + G S S + ++ALE Sbjct: 457 VNSDSVDALGVNWSLRAGTS----SIATNLPGP--STPAALSTIVLDAGRHLLANVNALE 510 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 R L++P++ ++ ++A + V+ + A + G +L TP V + Sbjct: 511 AQGKARILSKPSVLGVANRAAVMRE-KRVATVRVAGNLEANLFQ-IEAGTLLQMTPQVTA 568 Query: 325 -PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G+ +++ + + N D +P + + T + G ++++ G+ + Sbjct: 569 VEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQD 628 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +P LSK+P++G +FRN+ TE TP ++ A +S Sbjct: 629 NAVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683 >gi|311235499|gb|ADP88352.1| type III secretion outer membrane pore, YscC/HrcC family [Desulfovibrio vulgaris RCH1] Length = 696 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 106/289 (36%), Gaps = 25/289 (8%) Query: 154 IQDSQRAVELSETFLSQS--GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 QD Q+ +++ ++ Y + V+ L+ E V + I ++ + + Sbjct: 324 AQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDLDRPVEL-VEIHAAIVDIDTNFKR 382 Query: 212 QIGFQHSIT-----GSSSGPSKSFAAD------FGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G + T + G S D G G S + F + Sbjct: 383 DLGVTYQATVGKDQRWAGGADVSTGTDKFTPLPVPGVPQGSGLTLSTIYTMGSDYFLARI 442 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 +ALE+ R L P++ + A+ + + + A + + G VL TP Sbjct: 443 NALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQVQGYQ--AVDLFKVEAGTVLRVTP 500 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---------AGDMPSYRVRKADTTVELPSGGTIVLA 371 +++ I+ VS N +P + K +T + +G ++++ Sbjct: 501 HIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIPPIKQTKINTQAIIGAGQSLLIG 560 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G + +G+P+L IP+LG LF+ + E I TP +V+ Sbjct: 561 GYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRMERLILITPKVVR 609 >gi|317486813|ref|ZP_07945629.1| YscC/HrcC family type III secretion outer membrane pore [Bilophila wadsworthia 3_1_6] gi|316921976|gb|EFV43246.1| YscC/HrcC family type III secretion outer membrane pore [Bilophila wadsworthia 3_1_6] Length = 614 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 62/312 (19%), Positives = 112/312 (35%), Gaps = 27/312 (8%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRN--QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 G Q++ + +++ ++ N +Y KV+ L+ E V + I ++ Sbjct: 250 GGQAAPQNATQVNIMADPRVNAVLVNDAEYRMPYYAKVIADLDRPVEL-VEIHAAIVDID 308 Query: 207 RDILKQIGFQ----------HSITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVLDRFS 255 D + +G S G SG F+ G G + S Sbjct: 309 SDFKRDLGVTYQGANSRDKGWSTGGEFSGTGDKFSPLPTMGTPSGTGMNLSTIYTHGADF 368 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + ALE R L P++ + A+ + + + A + + G V Sbjct: 369 FLARIQALEAEGEARMLGRPSVLTVDNVQATLENTSTYYIQVEGYQ--AVDLFKVEAGTV 426 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIG-------VNAGDMPSYRVRKADTTVELPSGGTI 368 L TP ++ R I+ VS V+ +P + K +T + +G ++ Sbjct: 427 LRVTPHIIRNERGQTSIKLAVSVQDDQNDSKDAPVSDNSVPPIKQTKINTQAIVGAGQSL 486 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----PVAM 424 ++ G + GIP+L IP+LG LF+ + + E I TP ++ P Sbjct: 487 LIGGYYYEQKSTDASGIPILMHIPVLGNLFKTTSKGTKRMERLILITPKVIHLDEIPTTP 546 Query: 425 RDLSRPDDHYSV 436 + P H S Sbjct: 547 PRVDEPTFHRSP 558 >gi|326315361|ref|YP_004233033.1| type III secretion outer membrane pore, YscC/HrcC family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372197|gb|ADX44466.1| type III secretion outer membrane pore, YscC/HrcC family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 683 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 113/295 (38%), Gaps = 18/295 (6%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS-------KKVMNLLNIAGEDQVTLKVTIAE 204 T + +A E F + G N + ++ L+ V L+ TI E Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLD-QKPQLVELEATIIE 456 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V D + +G S+ +S S A + G S S + ++ALE Sbjct: 457 VNSDSVDALGVNWSLRAGTS----SIATNLPGP--STPAALSTIVLDAGRHLLANVNALE 510 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 R L++P++ ++ ++A + V+ + A + G +L TP V + Sbjct: 511 AQGKARILSKPSVLGVANRAAVMRE-KRVATVRVAGNLEANLFQ-IEAGTLLQMTPQVTA 568 Query: 325 -PGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G+ +++ + + N D +P + + T + G ++++ G+ + Sbjct: 569 VEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQD 628 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 +P LSK+P++G +FRN+ TE TP ++ A +S Sbjct: 629 NAVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683 >gi|312881261|ref|ZP_07741059.1| YscC/HrcC family type III secretion outer membrane protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309371153|gb|EFP98607.1| YscC/HrcC family type III secretion outer membrane protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 489 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 116/298 (38%), Gaps = 31/298 (10%) Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---NLLNI----------- 190 V + G+V ++ ++ ++ + +Q + A+S V+ N +++ Sbjct: 200 VKVPGVVSVLKQMEQG-DVGDETKNQGSTSFSADSRQNAVIIRTNKMDMDMYASLIKQLD 258 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + + + VTI +V Q+G S G S SF S D + Sbjct: 259 VSPEMIEVSVTIIDVDTSDFNQLGIDWSAAAKIGGGSISFNQG------SMSSDNFSTVI 312 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + +F L+ALE+ + + L+ P++ ++ A + T + + Sbjct: 313 GNTGNFMVRLNALEQNSKAKVLSRPSVVTLNNVQAVLD--KNVTFYTKVEGEKVAKLESV 370 Query: 311 DYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVEL 362 G +L TP +++ R+ L + + + +P + T L Sbjct: 371 TTGSLLRVTPRIVNEKHHQRVMLSLNIQDGQQTGQQKKAIGTNDALPQVENSEIATQATL 430 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +G +++L G ++D + ++ IPLL IP+LG LFR++ + + VK Sbjct: 431 KTGESLLLGGFVQDKNKTVENKIPLLGDIPLLGGLFRSTNHSTQSVMRLFLIKAEPVK 488 >gi|149200050|ref|ZP_01877075.1| type 4 fimbrial biogenesis protein PilQ [Lentisphaera araneosa HTCC2155] gi|149136808|gb|EDM25236.1| type 4 fimbrial biogenesis protein PilQ [Lentisphaera araneosa HTCC2155] Length = 864 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 65/340 (19%), Positives = 112/340 (32%), Gaps = 106/340 (31%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------------------------ 226 E+Q+ ++ E+ +D + ++ F+ SI G Sbjct: 509 PAENQIIIESKFYEINQDDIDELAFEWSIARIEDGSGFTDPNAGYIGRDPSYVGGVNGDP 568 Query: 227 --------SKSFAADFGGKFVSEGGD----------------------FSVKGVLDRFSF 256 S F+ D G S GGD F +L +F Sbjct: 569 NGSLNDFLSDGFSLDKSGDLTSAGGDGLESAVRSLGSVLGAPGLSQGTFKFASILGDTTF 628 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----------KTVSSSTGATS 306 T++ A+++ + L P +T +G +A + + + G+ S Sbjct: 629 NTLVSAIQQRSGEDVLNAPKVTTQNGHTAKIRVVQERYFPEEWEEPEVEQNSQGDGGSAS 688 Query: 307 VTT---------HDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAGDM-------- 348 T D G VL TP + R I L+++ EV E V N ++ Sbjct: 689 TVTPSKPVFGEPRDIGAVLTVTPQIDPDQRVIELQLKPEVIEFVEYDNTFNVDMLVGQEV 748 Query: 349 ------------------------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 P + R DTTV + G T+ L G++ ++ ++ Sbjct: 749 TFIPIIGNPFTVTVYTAFEQKFSMPIFESRTVDTTVRVWDGETLALGGMISENKTTYEDK 808 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 IP L IP LG F ++ + + I T L+ P + Sbjct: 809 IPYLGDIPFLGRFFTSNGERSVKQNLIIFVTARLIDPSGL 848 >gi|260778653|ref|ZP_05887545.1| type III secretion system outer membrane pore YscC [Vibrio coralliilyticus ATCC BAA-450] gi|260604817|gb|EEX31112.1| type III secretion system outer membrane pore YscC [Vibrio coralliilyticus ATCC BAA-450] Length = 484 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 114/288 (39%), Gaps = 28/288 (9%) Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---NLLNIA---------- 191 V + G+V ++ ++ + +Q + A+S V+ N +++A Sbjct: 200 VTIPGVVSVLKQMEQ--DEGPDASNQGTTSFSADSRQNAVIIRTNKMDMAMYASLIKQLD 257 Query: 192 -GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + + VTI +V Q+G S G S +F S D + Sbjct: 258 ITPTMIEVSVTIIDVDTSDFNQLGIDWSAAAKFGGGSVTFNQG------SLSSDNFSTVI 311 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + +F L+ALE+ + + L+ P++ ++ A + T + + Sbjct: 312 GNTGNFMVRLNALEQNSKAKVLSRPSVVTLNNVQAVLD--KNVTFYTKIEGEKVAKLESV 369 Query: 311 DYGVVLHFTPT-VLSPG--RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G +L TP V ++ L + + + V++ D +P + T L +G Sbjct: 370 TTGSLLRVTPRLVNENNFKKVMLSLNIQDGQQAKPVSSKDPLPQVENSEIATQATLKTGE 429 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +++L G ++D ++ IPLL IP+LG LFR++ +++ Sbjct: 430 SLLLGGFVQDKDHTVENKIPLLGDIPLLGGLFRSTDHSKQSVMRLFLI 477 >gi|167567127|ref|ZP_02360043.1| type III secretion system EscC protein [Burkholderia oklahomensis EO147] Length = 482 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 11/223 (4%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + V I ++ + L +G S + G S SF + GG+ + G FS + + S Sbjct: 259 VEISVAIIDINAEDLGALGVDWSASARIGGGSVSF--NSGGQ--PDAGSFSTV-IANTGS 313 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L AL++ + R L+ P++ + A + T S+ + + G + Sbjct: 314 FMVQLSALQQNSKARILSRPSIVTLDNMQAVLD--RNITFYTKVSAERVAKLESISTGSL 371 Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLA 371 L TP ++ + L + + ++ + +P + T L G ++L Sbjct: 372 LRVTPRIIGDAGRQEVMLTLVVQDGRQTSPLSQQEPLPQTLSSEIATHSLLKEGEALLLG 431 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 G ++D++ + + IPLL IP LG LF+ +R ++ T Sbjct: 432 GFVQDELSEGERKIPLLGDIPFLGRLFKTTRQSQRHTVRLFLI 474 >gi|330443957|ref|YP_004376943.1| type II and III secretion system protein [Chlamydophila pecorum E58] gi|328807067|gb|AEB41240.1| Bacterial type II and III secretion system protein [Chlamydophila pecorum E58] Length = 751 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 63/346 (18%), Positives = 135/346 (39%), Gaps = 20/346 (5%) Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + + A ++++ S + G V+ + S+T + A S + Sbjct: 393 KAEISMAKASPLVQIDTSSGVPMKEGPVK----YGNFIADSKTGTLVMVVEKEALSRIQM 448 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFG-GK 237 ++ L++ + V ++V + E + ++ G I+ S P+ S+ + G + Sbjct: 449 LLKKLDVP-KKMVRIEVLLFERKLSHDRKSGLNLLRLGEEISKKSLTPTVSWGSGAGILE 507 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F+ +G G ++ L +R A P++ ++ A + Sbjct: 508 FLLKG----ATGCSIVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVDEMSI-A 562 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 VS+ YG+++ P + G+ + ++T+++ G N D P R Sbjct: 563 VSAENDKALYNRAQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNMDDRPEVTRR 622 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 V + G ++++ GL + +EGIP L +IP LG LF + + TE+F+ Sbjct: 623 NITNKVRIADGESVIIGGLRCKHMSDSQEGIPFLGEIPGLGKLFSMNAVSDSLTEMFVFI 682 Query: 415 TPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 TP ++ P+ ++ S + + F+ V + A + Sbjct: 683 TPKILDNPMEKQERYEEALLASRPGEDEEFYQALVASEAVARSAQQ 728 >gi|167574392|ref|ZP_02367266.1| type III secretion system EscC protein [Burkholderia oklahomensis C6786] Length = 487 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 11/223 (4%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + V I ++ + L +G S + G S SF + GG+ + G FS + + S Sbjct: 264 VEISVAIIDINAEDLGALGVDWSASARIGGGSVSF--NSGGQ--PDAGSFSTV-IANTGS 318 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L AL++ + R L+ P++ + A + T S+ + + G + Sbjct: 319 FMVQLSALQQNSKARILSRPSIVTLDNMQAVLD--RNITFYTKVSAERVAKLESISTGSL 376 Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLA 371 L TP ++ + L + + ++ + +P + T L G ++L Sbjct: 377 LRVTPRIIGDAGRQEVMLTLVVQDGRQTSPLSQQEPLPQTLSSEIATHSLLKEGEALLLG 436 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 G ++D++ + + IPLL IP LG LF+ +R ++ T Sbjct: 437 GFVQDELSEGERKIPLLGDIPFLGRLFKTTRQSQRHTVRLFLI 479 >gi|313667332|ref|YP_004049733.1| type II and III secretion system protein [Oceanithermus profundus DSM 14977] gi|313153963|gb|ADR37813.1| type II and III secretion system protein [Oceanithermus profundus DSM 14977] Length = 804 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 98/264 (37%), Gaps = 24/264 (9%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 DQV +V I EV R ++G + FA ++ G D G Sbjct: 519 RPADQVVSRVWIQEVDRSAANELGINWQY------ATGKFAISVTEGVLTGGYD---SGA 569 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--------T 302 + + LE+ R L + ++ + + SGG+ L + T Sbjct: 570 SALSALAQSIRLLEKTGRSRRLLDANTLTLNAEPTTLLSGGKLLLPKQGDTGNVDGQEGT 629 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 G T +YG+ L TP G I L I T V A++ + + Sbjct: 630 GGTGYEEFNYGLNLELTPYTSPDGTITLDIATTVGSLPQSGPTPGSVLIPQSYAESRIRI 689 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP- 421 G ++L G++ ++ + G+P+L IP++GALFR + + E + I ++K Sbjct: 690 KDGQAVILGGVISNEDRNDVSGVPILKDIPVIGALFRTTERVQSERILLIIVQSHILKAE 749 Query: 422 ------VAMRDLSRPDDHYSVEDD 439 V + + + P Y + Sbjct: 750 SDGAGGVELPESALPSGEYDRSSE 773 >gi|323388142|gb|ADX60338.1| outer membrane type III secretion porin RscC [Pseudomonas fluorescens] Length = 713 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 101/283 (35%), Gaps = 18/283 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ L++A + V + I ++ R L++ G + S F G Sbjct: 320 RELISQLDVARKL-VEIDAIILDIERTQLREFGIRWGFQNSR----------FRGGVNMA 368 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + R F + ALE+ ++ P++ + Q A +++ Sbjct: 369 PGSSSQLSIEHRDRFNADIRALEQRGLATMVSNPSVLTLENQPAVIDFNRTQY---LTAG 425 Query: 302 TGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 T ++ G P V++ +I L + E A P R K T Sbjct: 426 TETATILPITVGTSFQVVPRVITTRGNHQIHLVVDIEDGNFDESNPARTSPDVRRGKVST 485 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPF 417 + ++V+ G + + IPLL IP+LG ALF +S E TP Sbjct: 486 QAVMAEKRSLVVGGFHVTESTDKQSKIPLLGDIPLLGKALFSSSERQNNRRERLFILTPR 545 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460 ++ A P + + A R + + S++ Sbjct: 546 VIGDQADPSRYLPQEDQAELQAALKPLARRYAEHQPVIKRSDI 588 >gi|294141031|ref|YP_003557009.1| type III secretion system EscC protein [Shewanella violacea DSS12] gi|293327500|dbj|BAJ02231.1| type III secretion system EscC protein, putative [Shewanella violacea DSS12] Length = 491 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 53/272 (19%), Positives = 108/272 (39%), Gaps = 15/272 (5%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + G V + A + + G +Q + + + L N + + V+I ++ Sbjct: 222 VSGTVSNVSGPVFAADSRRNAIIVRGSSQDVTTYASLIKQLDN--KPTMIEISVSILDID 279 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 KQ+G S + S SF +D + +S + + +F L+ALE+ Sbjct: 280 ASDFKQLGVDWSASAQLGNGSVSFNSDTSSENISTV-------IGNTGNFMVKLNALEKN 332 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT-VLSP 325 + + L+ P++ ++ A + T + + G +L TP + Sbjct: 333 SKAKVLSHPSVVTLNNVQAVLD--KNVTFYTKLEGDKVAKLESVTTGTLLRVTPRLIEES 390 Query: 326 GR--IGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G + L + + + V+ D +P + + T L SG ++++ G ++D + Sbjct: 391 GHTAVMLNLNIQDGQQSEAVSRSDPLPQVQNSEISTQAILKSGESLLIGGFVQDRDETSD 450 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 IPLL IP+LG LFR++ + + Sbjct: 451 HKIPLLGDIPLLGGLFRSTEHHTQSVMRLFLI 482 >gi|262066840|ref|ZP_06026452.1| general secretion pathway protein D [Fusobacterium periodonticum ATCC 33693] gi|291379452|gb|EFE86970.1| general secretion pathway protein D [Fusobacterium periodonticum ATCC 33693] Length = 514 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 54/310 (17%), Positives = 117/310 (37%), Gaps = 37/310 (11%) Query: 132 ADSNIRV--EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 D ++V E + + V ++ + V +E + ++ + ++ ++ Sbjct: 218 PDEVLKVLHETFGENI----KVSSLSKVNKLVVSAERDILENAIS---------IIEDID 264 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 QV + I ++ ++ +++GF + + ++ G S Sbjct: 265 -KNPKQVKISSQILDISNNLFEELGFDWVYKQNVASEERNSLTAIILGKAGLNGIGSTLN 323 Query: 250 VLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ +F+ T L+ LE + + PTL SG+ F + + ++ Sbjct: 324 IVRQFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENK 383 Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------- 353 T + G+++ P + I L I E+S+ N ++ Sbjct: 384 NDRHTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDINSGTYNSEG 443 Query: 354 -----RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R T V + G TI++ GL K Q ++ IP+L IPI+ F+N+ RE + Sbjct: 444 GSKVGRALTTKVRVKDGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENS 503 Query: 409 EIFIAATPFL 418 +++I + Sbjct: 504 DMYIKLKVEI 513 >gi|300310140|ref|YP_003774232.1| type II/III HrcC transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300072925|gb|ADJ62324.1| type II/III HrcC transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 693 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 55/290 (18%), Positives = 106/290 (36%), Gaps = 32/290 (11%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G ++ ++ + + R+ YA ++N L++ QV ++ I ++ R Sbjct: 297 EGKQPPRIEADSSLNAIMIYDDIAKRDMYAA-----LINQLDVK-PQQVEIEALIVDIDR 350 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG----VLDRFSFETVLHAL 263 L ++G + + + S G D + G + D F L A+ Sbjct: 351 SRLAEMGVEWGARAGVVNTTVNGT-----TTQSSGTDLPLPGATLLISDAARFYARLKAM 405 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E R LA PT+ + +A + S T G +L P ++ Sbjct: 406 ESNGEARVLATPTVLTLDNVAAVLDLSQSAYVSLIGERVADMSDIT--AGTMLRVIPRII 463 Query: 324 SPG---RIGLRIQTE-----------VSEPVIGVNAGDMPSYRVRK-ADTTVELPSGGTI 368 G R+ L + E S G A + + R +T + + T+ Sbjct: 464 DDGGQTRVRLEVDIEDGSLNNGNNDSGSNSSRGTGASTIAASVTRSTINTQAIIDAQQTL 523 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 ++ G + + + K+ +PLL +P++G LFR+ + E TP + Sbjct: 524 MIGGYRAESLIRNKQKVPLLGDLPVVGGLFRSESRSNSTRERLFLITPRI 573 >gi|254422445|ref|ZP_05036163.1| Bacterial type II and III secretion system protein [Synechococcus sp. PCC 7335] gi|196189934|gb|EDX84898.1| Bacterial type II and III secretion system protein [Synechococcus sp. PCC 7335] Length = 702 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 100/263 (38%), Gaps = 20/263 (7%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV + + + +V + G Q S + ++S F GG + Sbjct: 447 RRQVAVNLRVIDVNLNDSDSFGSQFSFGLGDTAITQSGGIGLI-NFGVAGGALGIAR--- 502 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------T 305 F L A +++ + + +PTL GQ+A+ + + + Sbjct: 503 --QFLAQLEASVQSSNAKIVTDPTLVIQEGQTAAVQLTQEVVTNITTDIETTEVGVLRTV 560 Query: 306 SVTTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADT-TVE 361 + D G+ L + G + L + +S P N G + R+ + + Sbjct: 561 TFEKEDAGLNLQVQIDRIDDNGFVTLAVAPSISAPTDTFNIGTEEAVLLANRQLTSGQIR 620 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G T+VL+G++++ + +P+L IP+LGALFRNS E+ + TP ++ Sbjct: 621 VRDGQTLVLSGIIQESDRNTVTKVPILGDIPLLGALFRNSDRENIRRELIVLLTPQVMND 680 Query: 422 VAMRDLSRPDDHYSVEDDAKAFF 444 D S Y +D + Sbjct: 681 S---DQSVYGYGYVPSEDVQQLL 700 >gi|46447109|ref|YP_008474.1| putative component D of type II secretion pathway [Candidatus Protochlamydia amoebophila UWE25] gi|46400750|emb|CAF24199.1| putative component D of type II secretion pathway [Candidatus Protochlamydia amoebophila UWE25] Length = 953 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 41/268 (15%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV +++ I + G G ++ ++F G S + ++ Sbjct: 634 RQVFIEMLILDTTITDSLTYGVDWGSRFGGGNTAGGQNFLGTGSGLVGSLTNAITNNPIV 693 Query: 252 DRF-----------------------SFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 D + ++ A+ T I + P + +A Sbjct: 694 DTVLSGDGYTAGIIGRHLTHGGLHFSTIGALVKAIHSDTKINIIMNPKIVTEDNNTAEVF 753 Query: 289 SGGQHLYKTVSSSTG-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G YKT S + + D G L TP + + G I L I EV+ Sbjct: 754 VGSTDRYKTQSIANDIGSVITNNFQFIDVGTTLRVTPLIGNNGIITLDIIQEVTNDGGNA 813 Query: 344 N-----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 N +P + T V +P G ++L+G+++ + IP L +P Sbjct: 814 NPNVGNNPSVVDVNLVPVLSKSRTVTKVHVPDGFFVILSGMIQSTESRSVNRIPCLGGLP 873 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420 ++G + + + + I P +V Sbjct: 874 LIGGISKQKSNRDSKRNLMIFIRPLIVD 901 >gi|315918572|ref|ZP_07914812.1| general secretion pathway protein D [Fusobacterium gonidiaformans ATCC 25563] gi|313692447|gb|EFS29282.1| general secretion pathway protein D [Fusobacterium gonidiaformans ATCC 25563] Length = 419 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 20/252 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+M ++I G+ QV + I ++ +D+ ++GF S +K A G + V Sbjct: 163 DKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEESVGN 221 Query: 242 GGDF--SVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G S ++ +FS L LE ++ + P++ G F + + Sbjct: 222 SGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITEEVI 281 Query: 295 YKTVSSSTG--ATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMP 349 +TSV + G++L P + + L I E+S+ N Sbjct: 282 VGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNQKKDW 341 Query: 350 SYRV-------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++ R T + + + TI++ GL + + + +P LS IP LG LF++ Sbjct: 342 NFNAQGGSKMGRSLSTRIHVKNKETILIGGLSRSTHRNTENRVPFLSDIPGLGYLFKSES 401 Query: 403 FNREETEIFIAA 414 ET+++I Sbjct: 402 KKDAETDMYIKI 413 >gi|257467448|ref|ZP_05631759.1| general secretion pathway protein D [Fusobacterium gonidiaformans ATCC 25563] Length = 435 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 20/252 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+M ++I G+ QV + I ++ +D+ ++GF S +K A G + V Sbjct: 179 DKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEESVGN 237 Query: 242 GGDF--SVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G S ++ +FS L LE ++ + P++ G F + + Sbjct: 238 SGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITEEVI 297 Query: 295 YKTVSSSTG--ATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMP 349 +TSV + G++L P + + L I E+S+ N Sbjct: 298 VGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNQKKDW 357 Query: 350 SYRV-------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++ R T + + + TI++ GL + + + +P LS IP LG LF++ Sbjct: 358 NFNAQGGSKMGRSLSTRIHVKNKETILIGGLSRSTHRNTENRVPFLSDIPGLGYLFKSES 417 Query: 403 FNREETEIFIAA 414 ET+++I Sbjct: 418 KKDAETDMYIKI 429 >gi|254447525|ref|ZP_05060991.1| type II and III secretion system protein [gamma proteobacterium HTCC5015] gi|198262868|gb|EDY87147.1| type II and III secretion system protein [gamma proteobacterium HTCC5015] Length = 506 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 96/256 (37%), Gaps = 24/256 (9%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 ++ + G QV ++ T+ E+ Q G + + + S Sbjct: 234 VDRVVERGRRQVLIEATVVEIDLSQSYQAGVDWQRVMNGGEWTLQQSMTKPSLAASPMTL 293 Query: 245 FSVKGVLDRFSFE-TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----V 298 + R S + LE+ + + P + A++ Q + + +Y T Sbjct: 294 LAQHEKQSRDSVTRAAVTLLEQFGDVNVHSRPRIVALNNQPSLLKVIDKRVYFTLDVQNT 353 Query: 299 SSSTGATS------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------- 344 ++S GAT+ + T G + TP V + L ++ +S V+ Sbjct: 354 TASGGATTSTVETHINTLPVGFTMSVTPFVTQSD-VTLSVRPSLSRITRFVDDPSPALAA 412 Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +P VR+ +T + L T ++ GL+++ + +P+LS+IP LG LF+ Sbjct: 413 EGIVSRVPEVEVREMETLLRLDGEQTALIGGLMQERRSEEHYAVPVLSRIPWLGELFKGR 472 Query: 402 RFNREETEIFIAATPF 417 ++E+ I Sbjct: 473 EERWNKSELVILLRAR 488 >gi|171915470|ref|ZP_02930940.1| type II and III secretion system protein:NolW-like [Verrucomicrobium spinosum DSM 4136] Length = 896 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 100/252 (39%), Gaps = 26/252 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q+ L I E G T S G A V E DF+ G ++ Sbjct: 518 PRQILLTAVIGEFTLGNDFSFGVDWLHTLESVGKDGLIAGALNTSGV-EPVDFTKFGGIE 576 Query: 253 RFS--------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295 F+ L LE+ L +PT+TA++ + A+ G Sbjct: 577 DFAAPQGLAVYGHIGKHLNVFLRTLEQNKRFHVLQKPTVTALNHEEANIFIGQDLAIAGQ 636 Query: 296 ------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGD 347 TV+ ++ A++ + L TP + + + L + ++ ++ Sbjct: 637 TLTTGGTTVNGASVASTTDYVKVRLELRITPHIFANDEVRLDFEQTNNDVSGFTEISGNR 696 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P+ V+ T+ +P+ T++L GL+ + + K G+P L ++P+L LF N+ ++E Sbjct: 697 VPNLSVQGMRNTIIVPNRSTVLLGGLITERDSKNKNGLPFLVRVPVLKHLFGNTSNSKER 756 Query: 408 TEIFIAATPFLV 419 E+ I P ++ Sbjct: 757 RELMIFVQPQIL 768 >gi|300771988|ref|ZP_07081859.1| type II general secretion pathway D protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761374|gb|EFK58199.1| type II general secretion pathway D protein [Sphingobacterium spiritivorum ATCC 33861] Length = 624 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 98/244 (40%), Gaps = 18/244 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 V ++VT+ ++ + + G + + S +G S A DF S S G Sbjct: 380 PMVLIEVTLLDINKGNTVKTGIKMGVADSIPQTGGSLFPALDFTFGAGSINRFLSFLGKN 439 Query: 252 DRFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301 + F+ F L ALE + + P L+ ++G A + G + YKT + + Sbjct: 440 NAFNLGRVTPNFYVTLSALEANKNVEMRSIPKLSTLNGHQAKLSIGSKRYYKTTTQNVIP 499 Query: 302 ------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 T + + + P + +I L+I ++S+ V V G P K Sbjct: 500 SLQTTTVTTEQFTPVEANMNIDIKPVISGDDQITLKITVDISDFVGTVKDGQPPPTSTSK 559 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++ + + IVL G+ + + G+PLLS+IP+L LF + + + Sbjct: 560 FESIIRARNEDMIVLGGIERTENSSSGSGVPLLSRIPVLKWLFSSREKTTNKVVSVVFIK 619 Query: 416 PFLV 419 P ++ Sbjct: 620 PTII 623 >gi|46562147|ref|YP_009152.1| type III secretion system protein YscC family [Desulfovibrio vulgaris str. Hildenborough] gi|46447684|gb|AAS94350.1| type III secretion system protein, YscC family [Desulfovibrio vulgaris str. Hildenborough] Length = 624 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 106/289 (36%), Gaps = 25/289 (8%) Query: 154 IQDSQRAVELSETFLSQS--GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 QD Q+ +++ ++ Y + V+ L+ E V + I ++ + + Sbjct: 252 AQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDLDRPVEL-VEIHAAIVDIDTNFKR 310 Query: 212 QIGFQHSIT-----GSSSGPSKSFAAD------FGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G + T + G S D G G S + F + Sbjct: 311 DLGVTYQATVGKDQRWAGGADVSTGTDKFTPLPVPGVPQGSGLTLSTIYTMGSDYFLARI 370 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 +ALE+ R L P++ + A+ + + + A + + G VL TP Sbjct: 371 NALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQVQGYQ--AVDLFKVEAGTVLRVTP 428 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---------AGDMPSYRVRKADTTVELPSGGTIVLA 371 +++ I+ VS N +P + K +T + +G ++++ Sbjct: 429 HIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIPPIKQTKINTQAIIGAGQSLLIG 488 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G + +G+P+L IP+LG LF+ + E I TP +V+ Sbjct: 489 GYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRMERLILITPKVVR 537 >gi|218887514|ref|YP_002436835.1| type III secretion outer membrane pore, YscC/HrcC family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758468|gb|ACL09367.1| type III secretion outer membrane pore, YscC/HrcC family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 666 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 56/307 (18%), Positives = 110/307 (35%), Gaps = 27/307 (8%) Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF----------QHSITGSSSG 225 Y + V+ L+ E V + I ++ D + +G + + G S Sbjct: 300 YRMPYYESVIGDLDKPVEL-VEIHAAIVDIDSDYKRDLGVTYQGTAGSGQRWAGGGDFST 358 Query: 226 PSKSF-AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + +F GK + G S + F + ALE+ R L P++ + Sbjct: 359 GTDAFPTLPSPGKPLGNGLTLSTIYTMGSDYFLAQVTALEKNGEARMLGRPSVLTVDNVQ 418 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV--LSPGRIGLRIQTEVSEPVIG 342 A+ + + + A + + G VL TP + G +++ V + Sbjct: 419 ATLENTSTYYIEVQGYQ--AVDLFKVEAGTVLRVTPHIIRNEDGGQSIKLVVSVQDDQND 476 Query: 343 VNAGD-------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 ++ +P + K +T + G ++++ G + GIP+L IP+LG Sbjct: 477 NSSATSTSNSTAIPPVKQTKINTQAIVGGGQSLLIGGYYYEQKSTTDTGIPILMDIPVLG 536 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 LF+ + + E I TP +V+ + +L + ++ N+ P Sbjct: 537 HLFKTNSKTSKRMERLILITPKVVR---LNELPATPERVDDPSFHRSATQGDYNEKV-PA 592 Query: 456 EASEVEG 462 A G Sbjct: 593 PAPRRSG 599 >gi|284006883|emb|CBA72151.1| type III secretion component protein SctC [Arsenophonus nasoniae] Length = 598 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 91/243 (37%), Gaps = 8/243 (3%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ L+ + + ++I +V D L ++G + G +G + Sbjct: 266 QRLIHSLDKPTAR-IEVALSIIDVNADNLSELGIDWGV-GLKAGQHHQINIASTLTQAAS 323 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 S+ + L+ + +++PTL A + K + Sbjct: 324 PVLGSLLDKQGLNYLVAKVSLLQSQGIAQVVSKPTLLTQENTQAIIDHNETYYIKV--NG 381 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MPSYRVRKAD 357 + YG +L TP V+ G I L + E + D +P+ D Sbjct: 382 ERVAELKGITYGTLLQMTPRVIQIGDKPEIHLVLHIEDGNQKPNSSGVDGIPTINRTIID 441 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + G ++V+ G+ +D++ + +PLL IP+LGALFR+ P Sbjct: 442 TVARVEQGQSLVIGGIFRDEVIKTSRKVPLLGDIPLLGALFRSQSNQTRRVVRIFIVEPK 501 Query: 418 LVK 420 ++ Sbjct: 502 IID 504 >gi|86607978|ref|YP_476740.1| type IV pilus secretin PilQ [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556520|gb|ABD01477.1| type IV pilus secretin PilQ, putative [Synechococcus sp. JA-2-3B'a(2-13)] Length = 696 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 61/376 (16%), Positives = 134/376 (35%), Gaps = 67/376 (17%) Query: 82 HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH-LEMTLRRFIADSNIRVEM 140 +T+++ G +++ ++ + D+A LE L + V+ Sbjct: 342 RRGQTVFVGQNLPGVTGILVRN------YRVNQAVATDLASRLEEVLNAVAPGAQFVVDE 395 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 ++++ + G + Q A ++++ + + QV + + Sbjct: 396 RTNSITVIGN--SRQQDIAAAQIAQLDVRR-----------------------RQVLISL 430 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------EGGDFSVK 248 ++R D + + + A+FGG+ ++ G S+ Sbjct: 431 RAVDIRLDKNESLSVNLGGASGNFALGTLGDANFGGRPLNQPAGSSVSSIGPAGPSGSIT 490 Query: 249 GVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 G+ + + + + + + L +P + G S+ + + + Sbjct: 491 GIFNTLNRLQQSLALRVQSAIQNGTGKILTDPKVVVADGGSSRISIATSVPVNVETITIP 550 Query: 304 ---------ATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGD------ 347 + D GV+L + G + L IQ E+S PV G Sbjct: 551 QGENQPPVVTQRLQREDAGVILDVSEVRIDDNGFVTLTIQPEISIPVPSQILGGGDFAGI 610 Query: 348 -MPSYRVRKAD-TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + + R+ + + L G T ++AGL++D + +P L +P+LGALFR+ N Sbjct: 611 LLFNIDRRQLQASQLRLRDGQTFIIAGLIQDRDIVDVQKVPFLGDLPLLGALFRSQSVNN 670 Query: 406 EETEIFIAATPFLVKP 421 E E+ TP+++ Sbjct: 671 ERNEVVFMLTPYIMDD 686 >gi|313681848|ref|YP_004059586.1| pilus (msha type) biogenesis protein mshl [Sulfuricurvum kujiense DSM 16994] gi|313154708|gb|ADR33386.1| pilus (MSHA type) biogenesis protein MshL [Sulfuricurvum kujiense DSM 16994] Length = 533 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 101/259 (38%), Gaps = 34/259 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------------ITGSSSGPS 227 ++ L + QV + V + V G S + G Sbjct: 232 DTYLDDLQKKMQTQVLIDVKMYSVIFSDASSTGIDWSQLYALQNIDLTFDYVNSKDVGKF 291 Query: 228 KSFAADFGGKFVSEGGD------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + G F G D SV + + S V+ L+ + +++ P + ++ Sbjct: 292 TSTNLNTGTSFDEYGTDSVGRTGASVFRLGAKGSLNEVIKFLKTQGDVYSISNPKILTLN 351 Query: 282 GQSASFTSGGQHLYKTVSSSTGATS---------VTTHDYGVVLHFTPTVLSPGRIGLRI 332 Q A T+G + YKT SS++ + V++ GV+L TP + G I LRI Sbjct: 352 NQPALITAGTELFYKTKSSTSTTAASTTTSENEIVSSVFSGVLLDITPEISKDGSITLRI 411 Query: 333 QTEVSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 +SE +N+ + P R+ + + + G ++L GL+ +PL Sbjct: 412 NPSISETASVINSSNEQRSMPPDLSRRQMSSVISVQDGSRVILGGLINTKNVNDTNKVPL 471 Query: 388 LSKIPILGALFRNSRFNRE 406 L IP+LG LF+ N++ Sbjct: 472 LGDIPVLGYLFKKEGLNKK 490 >gi|120586851|ref|YP_961196.1| YscC/HrcC family type III secretion outer membrane protein [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564265|gb|ABM30008.1| type III secretion outer membrane pore, YscC/HrcC family [Desulfovibrio vulgaris DP4] Length = 624 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 106/289 (36%), Gaps = 25/289 (8%) Query: 154 IQDSQRAVELSETFLSQS--GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 QD Q+ +++ ++ Y + V+ L+ E V + I ++ + + Sbjct: 252 AQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDLDRPVEL-VEIHAAIVDIDTNFKR 310 Query: 212 QIGFQHSIT-----GSSSGPSKSFAAD------FGGKFVSEGGDFSVKGVLDRFSFETVL 260 +G + T + G S D G G S + F + Sbjct: 311 DLGVTYQGTVGKDQRWAGGADVSTGTDKFTPLPVPGVPQGSGLTLSTIYTMGSDYFLARI 370 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 +ALE+ R L P++ + A+ + + + A + + G VL TP Sbjct: 371 NALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQVQGYQ--AVDLFKVEAGTVLRVTP 428 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---------AGDMPSYRVRKADTTVELPSGGTIVLA 371 +++ I+ VS N +P + K +T + +G ++++ Sbjct: 429 HIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIPPIKQTKINTQAIIGAGQSLLIG 488 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G + +G+P+L IP+LG LF+ + E I TP +V+ Sbjct: 489 GYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRMERLILITPKVVR 537 >gi|320539812|ref|ZP_08039471.1| putative predicted fimbrial transporter [Serratia symbiotica str. Tucson] gi|320029998|gb|EFW12018.1| putative predicted fimbrial transporter [Serratia symbiotica str. Tucson] Length = 403 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 5/183 (2%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + + L ++G + + +F + S L R Sbjct: 183 QVQLASYIVTINSENLHELGVRWGLAADERPAQPLRLDNFNVGLTQQKSTLSAGFHLARL 242 Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 S L ALE+ + +A P L Q+AS G + Y+ S ++GATSV + Sbjct: 243 SGRLLNLELTALEQENRVEIIANPRLLTAHMQTASIKQGTEIPYEVSSGASGATSVEFKE 302 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SYRVRKADTTVELPSGGTIV 369 + + TP VL GRI L + + P V+ G+ + ++ T + + G TIV Sbjct: 303 AVLGMEVTPRVLPDGRITLTLYISQNMPGRSVSRGEGEALTIDKQEIKTQITVKDGETIV 362 Query: 370 LAG 372 L G Sbjct: 363 LGG 365 >gi|238785761|ref|ZP_04629734.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia bercovieri ATCC 43970] gi|238713344|gb|EEQ05383.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia bercovieri ATCC 43970] Length = 504 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 12/244 (4%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-EGGDFSVKGVL 251 Q+ + VTI +V + Q+G S + S G SF + G D + Sbjct: 265 PIQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSGSGSSGTGKNSADGFSTVIG 324 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D +F L+AL++ + R L++P++ ++ A + T + + Sbjct: 325 DTSNFMVRLNALQKNSRARVLSQPSVVTLNNIQAVLD--KNVTFYTKLQGDKVAKLESIT 382 Query: 312 YGVVLHFTPTVLSPG---RIGLRIQ-TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 G +L TP ++ + L + + + N+ +P + T L G + Sbjct: 383 SGSLLRVTPRMIDADGEKEVLLNLNIQDGQQQAPISNSEPLPEIQNSDISTQATLRVGQS 442 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 ++L G ++D + + IPLL IP+LG LFR++ FL+K V + Sbjct: 443 LLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTDKQSHS-----VVRLFLIKAVPVNTG 497 Query: 428 SRPD 431 D Sbjct: 498 ELYD 501 >gi|238897391|ref|YP_002923068.1| type III outer membrane secretin precursor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465146|gb|ACQ66920.1| type III outer membrane secretin precursor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 496 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 66/310 (21%), Positives = 118/310 (38%), Gaps = 41/310 (13%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY-------------ANSSSKKVMNL--- 187 V L G+V ++D ++ SG++Q A +V+N+ Sbjct: 198 KVTLPGLVSVLRDMNSQNTIAIGENKTSGKDQSLGLPLFSADPRQNALIVRDRVVNMPIY 257 Query: 188 ------LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 L++ ++ + V I +V + Q+G + S G SF F S+ Sbjct: 258 ASLVKQLDVR-PIEIEISVAIIDVDASDINQLGINWEASASLGGGKVSFNKGF---ISSD 313 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G FS + F ++ALE+ + R L+ P++ ++ A + T Sbjct: 314 DGGFS---TVVGNDFMVRINALEQHSKARVLSRPSIVTLNNIQAVLD--KNVTFYTKLQG 368 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 + + G ++ TP ++ + L IQ P I +P + Sbjct: 369 DKVAKLDSRTTGTLMQVTPRMIKDKGKEDVLLNLDIQDGQQRPSINNTTEILPQIDNSQI 428 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T L G ++L G ++D + K IPLL IP++G LFR+S Sbjct: 429 TTQAVLKPGQNLLLGGFIQDSQKASKHKIPLLGDIPLIGGLFRSSSKQSSS-----VVRL 483 Query: 417 FLVKPVAMRD 426 FL+K V +++ Sbjct: 484 FLIKAVPVKN 493 >gi|238757842|ref|ZP_04619024.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia aldovae ATCC 35236] gi|238703827|gb|EEP96362.1| Possible type III secretion protein EscC/SpiA, outer membrane pore [Yersinia aldovae ATCC 35236] Length = 484 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 124/318 (38%), Gaps = 30/318 (9%) Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 +++ ++ L R +N + + Q AV + + ++ +G Sbjct: 187 TVVVPGIVSVLRDMNRGSAPTTNTSSPATQGLPM-----FSADPRQNAVIVRDRSVNMAG 241 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232 +K+++ L+ + + VTI +V + Q+G S S G + SF Sbjct: 242 --------YRKLISELDQR-PQMIEISVTIIDVDAGDISQLGIDWSAAVSMGGGTLSF-- 290 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 G + GG FS + + SF L ALE+ + L++P++ ++ A Sbjct: 291 --NGPDSNTGGGFSTV-ISNTPSFMARLVALEKNSHAYILSQPSVVTLNNIQAVLD--KN 345 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-M 348 + T + + G +L TP +L I L + + + ++ + + Sbjct: 346 ITFYTKLEGDKVAKLESITTGSLLRVTPRLLEDKGKQNIMLSLNIQDGQQNAPISQSEPL 405 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + + + L +G +++L G +D Q++ IPLL IPI+G LFR+ Sbjct: 406 PQVQNSEIASQATLQAGQSLLLGGFKQDKQVQVQNKIPLLGDIPIIGHLFRSDINQTNS- 464 Query: 409 EIFIAATPFLVKPVAMRD 426 FL+K + Sbjct: 465 ----VIRLFLIKATVAAN 478 >gi|171912205|ref|ZP_02927675.1| general secretion pathway protein D [Verrucomicrobium spinosum DSM 4136] Length = 759 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 31/257 (12%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-------------SITGSSSGPSKSFAADFGG--- 236 Q+ L I E + G +S + D Sbjct: 446 PPQIILSAIIGEFTTGKDFRFGLDWVRTLEQVNDNLVIGGINKTSTTETNAMTDLAALGN 505 Query: 237 --KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 F+ +V G + + L+ LE + L P +T ++ + A+ ++G Q Sbjct: 506 VADFLPALQGLTVYGKIGK-HLNVFLNTLEESDRFHVLQRPYVTTLNHKKATISTGQQLA 564 Query: 295 YKTVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLR-IQTEVSEPV-IG 342 + S+G ++ + L P + + L +Q + Sbjct: 565 IPGQTYSSGIGSDPDTNGFVSNTQYIPAELKLDIVPHIYDKNEVKLEFVQQNLDIASYTT 624 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 ++ +P+ + TV +P+G TI+L GL+ + + K G+P+LS+IP++ LF ++ Sbjct: 625 ISGNQVPNLSTQTLSNTVVVPNGATIILGGLITERDRNNKSGVPVLSRIPLVKHLFGSTA 684 Query: 403 FNREETEIFIAATPFLV 419 +E E+ I P +V Sbjct: 685 KTKERRELMIFVQPIIV 701 >gi|317061875|ref|ZP_07926360.1| general secretion pathway protein D [Fusobacterium sp. D12] gi|313687551|gb|EFS24386.1| general secretion pathway protein D [Fusobacterium sp. D12] Length = 419 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 91/253 (35%), Gaps = 22/253 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGG 236 K++ ++I G+ QV + + ++ +D+ ++GF S + S G Sbjct: 164 DKIIQEIDIEGK-QVKVYSQVLDISKDLFHELGFDWLYEKPSKQKNQFSVSVLGEESAGN 222 Query: 237 KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G +++ + LE ++ + P + G + F + + Sbjct: 223 SGPVLGSKWNLIRQFSNAAEVLGLSFKLLEAKQDLKITSSPAILIAHGNTGEFKITEEVI 282 Query: 295 YKTVSSSTGA--TSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVI 341 TSV + G++L P + + L I E+S+ Sbjct: 283 VGEKKEKKKGEHTSVEPIFKEAGLILKVVPYIHQDSSVTLDISLELSDFKYRQTNQKKDW 342 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 N+ R T + + + T+ + GL + + + +P L IP +G LFR+ Sbjct: 343 NFNSQGGSKIG-RSLSTRIHVKNKETVFIGGLSRFTNRNTENKVPFLGDIPGIGHLFRSE 401 Query: 402 RFNREETEIFIAA 414 ETE++I Sbjct: 402 SKKESETEMYIKI 414 >gi|308095376|ref|ZP_05905407.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus Peru-466] gi|308086743|gb|EFO36438.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus Peru-466] Length = 525 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 87/240 (36%), Gaps = 36/240 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I + + ++G + T + + Sbjct: 288 REIIESLDIP-VKQVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 346 Query: 230 -------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAI 269 + + F V + + L AL++ + Sbjct: 347 YEGGGDGEGEEGGVGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKA 406 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 ++ P L + + A G + Y SSS+GATSVT + L TP + R+ Sbjct: 407 EIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKKAVLSLKVTPQITPDNRLV 465 Query: 330 LRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 L + P V+ G+ + ++ T V + +G T+VL G+ + I + +PL Sbjct: 466 LDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPL 525 >gi|257464370|ref|ZP_05628747.1| general secretion pathway protein D [Fusobacterium sp. D12] Length = 435 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 91/253 (35%), Gaps = 22/253 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGG 236 K++ ++I G+ QV + + ++ +D+ ++GF S + S G Sbjct: 180 DKIIQEIDIEGK-QVKVYSQVLDISKDLFHELGFDWLYEKPSKQKNQFSVSVLGEESAGN 238 Query: 237 KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G +++ + LE ++ + P + G + F + + Sbjct: 239 SGPVLGSKWNLIRQFSNAAEVLGLSFKLLEAKQDLKITSSPAILIAHGNTGEFKITEEVI 298 Query: 295 YKTVSSSTGA--TSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVI 341 TSV + G++L P + + L I E+S+ Sbjct: 299 VGEKKEKKKGEHTSVEPIFKEAGLILKVVPYIHQDSSVTLDISLELSDFKYRQTNQKKDW 358 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 N+ R T + + + T+ + GL + + + +P L IP +G LFR+ Sbjct: 359 NFNSQGGSKIG-RSLSTRIHVKNKETVFIGGLSRFTNRNTENKVPFLGDIPGIGHLFRSE 417 Query: 402 RFNREETEIFIAA 414 ETE++I Sbjct: 418 SKKESETEMYIKI 430 >gi|261884996|ref|ZP_06009035.1| type II and III secretion system protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 203 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 17/187 (9%) Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHD 311 VL+ LE + ++ P + ++ +A T G Y+ +T + T Sbjct: 3 GVLNFLETKGRTKVVSSPKIMTMNNHNALITVGDNINYRVQEDTTNTNTQTAVSNTTYTQ 62 Query: 312 Y----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTV 360 Y G++L+ P V GRI LRI +S G + P +K T V Sbjct: 63 YSIFIGILLNLLPEVSDDGRIMLRINPSLSSFKYGDDNRRQANIREIAPDTLQKKLSTVV 122 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++ SG TI+L GL+ + + +P+L IP+ G LF++++ + TE+ TP ++ Sbjct: 123 QVNSGDTIILGGLIGETKGKDNTSVPVLGDIPLFGNLFKSTKDSVSTTELIFIITPKVIN 182 Query: 421 PVAMRDL 427 + + Sbjct: 183 NETPKQI 189 >gi|257453318|ref|ZP_05618617.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R] gi|317059850|ref|ZP_07924335.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R] gi|313685526|gb|EFS22361.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R] Length = 435 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 99/253 (39%), Gaps = 22/253 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+M ++I G+ QV + I ++ +D+ ++GF S +K A G + V Sbjct: 179 DKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEESVGN 237 Query: 242 GGDF--SVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G S ++ +FS L LE ++ + P++ G F + + Sbjct: 238 SGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITEEVI 297 Query: 295 YKTVSSSTG--ATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVI 341 +TSV + G++L P + + L I E+S+ Sbjct: 298 VGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNHKKDW 357 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 N+ R T + + + I++ GL + + + +P LS IP LG LF++ Sbjct: 358 NFNSQGGSKIG-RSLSTRIHVKNKEMILIGGLSRFTRRNTENKVPFLSDIPGLGYLFKSE 416 Query: 402 RFNREETEIFIAA 414 ET+++I Sbjct: 417 SKKDAETDMYIKI 429 >gi|189424524|ref|YP_001951701.1| type II and III secretion system protein [Geobacter lovleyi SZ] gi|189420783|gb|ACD95181.1| type II and III secretion system protein [Geobacter lovleyi SZ] Length = 769 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 66/328 (20%), Positives = 120/328 (36%), Gaps = 40/328 (12%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------EDQVTLKV 200 D+++A L T L ++++ V + ++ E +V L V Sbjct: 276 NHLDAKKAANLIRTMLQVRRLYINEDANALVVRDTSDVTDVIEKILEAHDLPEAEVVLDV 335 Query: 201 TIAEVRRDILKQIGF---QHSITGSSSGPSKSFAADFGGKFVSEGG-------------- 243 + E+ +G + + + PS A S Sbjct: 336 EVIEISDKNAHNVGLLLSNYDVQLGAFSPSNELLATTLKDTTSTTSTTVTTDATIKNLVK 395 Query: 244 DFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 FS+ + + + T L+ P + + + A F G + T + +T Sbjct: 396 AFSINSFGGYVTVPNAQYNFGKTLTNGEVLSNPKIRVKNKEKAKFNVGTRVPITTTTMAT 455 Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYR 352 +V D GV ++ PT+ + +++ EVS + G + + Sbjct: 456 TGTTSQVNVQYVDVGVKVNAEPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTIG 515 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R DT + L G T V+ GL+ K+ I LL IP++G L NS+ + ++TE+ + Sbjct: 516 TRNLDTVLSLKDGETSVIGGLISHSNSDSKQKIFLLGDIPLIGPLLSNSKTDNDKTELIL 575 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDA 440 A TP LV+ V ++ EDD Sbjct: 576 AITPRLVRGVTVQPRKVTSFISGKEDDP 603 >gi|326423830|ref|NP_760303.2| type IV pilus biogenesis protein PilQ [Vibrio vulnificus CMCP6] gi|319999200|gb|AAO09830.2| Type IV pilus biogenesis protein PilQ [Vibrio vulnificus CMCP6] Length = 594 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 108/282 (38%), Gaps = 46/282 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++N L+I QV ++ I V L ++G + T + + Sbjct: 313 REIINSLDIP-VKQVQIEARIVTVNEGNLDELGVRWGFTSINGSTTVGGSIENNLATIGL 371 Query: 230 -----------------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETV 259 + + F V + + Sbjct: 372 YNAGSGSGSGDSGSGGSGSEGGSASIDDFLNVNLAATSANASSIAFQVAKLGSDLLLDLE 431 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+R + ++ P L + + A G + Y SSS+GAT+V+ + L T Sbjct: 432 LSALQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVT 490 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P ++ G+ + ++ T V + +G T+VL G+ + Sbjct: 491 PQITPDNRLVLDLSVTQDRPGEIVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 550 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR S N + E+ I TP ++ Sbjct: 551 ITNTTDKVPLLGDLPLLGALFRRSYENVGKRELLIFVTPKVI 592 >gi|37681174|ref|NP_935783.1| type IV pilus (Tfp) assembly protein PilQ [Vibrio vulnificus YJ016] gi|37199925|dbj|BAC95754.1| type IV pilus (Tfp) assembly protein PilQ [Vibrio vulnificus YJ016] Length = 594 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 108/282 (38%), Gaps = 46/282 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++N L+I QV ++ I V L ++G + T + + Sbjct: 313 REIINSLDIP-VKQVQIEARIVTVNEGNLDELGVRWGFTSINGSTTVGGSIENNLATIGL 371 Query: 230 -----------------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETV 259 + + F V + + Sbjct: 372 YNAGSGSGSGDSGSGGSGGEGGSASIDDFLNVNLAATSANASSIAFQVAKLGSDLLLDLE 431 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+R + ++ P L + + A G + Y SSS+GAT+V+ + L T Sbjct: 432 LSALQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVT 490 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P ++ G+ + ++ T V + +G T+VL G+ + Sbjct: 491 PQITPDNRLVLDLSVTQDRPGEIVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 550 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR S N + E+ I TP ++ Sbjct: 551 ITNTTDKVPLLGDLPLLGALFRRSYENVGKRELLIFVTPKVI 592 >gi|158334571|ref|YP_001515743.1| secretion system protein [Acaryochloris marina MBIC11017] gi|158304812|gb|ABW26429.1| secretion system protein [Acaryochloris marina MBIC11017] Length = 682 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 64/286 (22%), Positives = 112/286 (39%), Gaps = 29/286 (10%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEG 242 ++ +++ + QV + V +V K + S G A+ G S Sbjct: 399 LLTRMDVR-QRQVAINVKFIDVNLLKGKLSNADLQFRANDSLGIGFRPDANGRGGLTSIF 457 Query: 243 GDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFT------SGG 291 G +V V +F L + + L PTL G SA +G Sbjct: 458 GSGTVPIVGSGLFTLTETFLGNLFVSIQNNDAKILTNPTLLVQEGSSAQVNLTEQVFTGF 517 Query: 292 QHLYKTVSSSTGATSVTT------HDYGVVLHFTP-TVLSPGRIGLRIQTEVSEP----- 339 + S+ GAT+ +T + GV+L+ + G + L + EVS Sbjct: 518 VQRVSSSGSTAGATTDSTSTEPNIQNAGVILNVVVDHIDDNGFVTLNLSPEVSSLSGRTF 577 Query: 340 VIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 V ++ + R+ +T V L G TIVL G+++D + +P+L IP+LG LF Sbjct: 578 VDALSGDTAFLLQQRRVETGKVRLRDGQTIVLTGIIQDQDRVDVSKVPILGDIPLLGRLF 637 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 R R+ +E+ + TP +V D + Y+ ++++ Sbjct: 638 RRENKTRQRSELVVLVTPQIVDDS---DQTTYGYRYTPGEESQKLL 680 >gi|15805800|ref|NP_294498.1| general secretion pathway protein D [Deinococcus radiodurans R1] gi|6458483|gb|AAF10350.1|AE001932_2 general secretion pathway protein D, putative [Deinococcus radiodurans R1] Length = 740 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 81/430 (18%), Positives = 165/430 (38%), Gaps = 47/430 (10%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL-VSD 73 L ++ ++ P+ + V+N + ++ + +++ + VQ V + + Sbjct: 334 ALLAAQYPTLRVTPVGQTGQLVLNGAQAQLDTALALLEQVDRPAPVAESRTVQRVFQLVN 393 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 + +V T+ ++ + + N+ + D + + + Sbjct: 394 ASAEEVKATLEGTL--------ARDLTA-DSNNDVLPNVPVTAT-DANGNTTVVS--VPN 441 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE---TFLSQSGRNQYANSSSKKVMNLLNI 190 + + +T ++Q+A +++ L G + ++ V L + Sbjct: 442 ALGKTANQGTANAQAQTAQTPANTQQATLIADKRTNSLIVRGTPEQVAQVAELVPQLDQV 501 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 Q+ ++V I EV L+ +G T + S F+ Sbjct: 502 V--PQINVQVRIQEVNERALQSLGLNWRATFGGFNVAVSGGTGLAAT-------FNPTQS 552 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQS----------------ASFTSGGQHL 294 F+ L ALE R + + +T SGQ AS SGG+ Sbjct: 553 FLGFNIFPTLTALETQGLTRRVYDGNVTMQSGQRSLSATGGAQNASSGAAASVKSGGRLE 612 Query: 295 YKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350 S++ V DYG+ L F +P V G I LRI+ +V++P + A +P+ Sbjct: 613 INIPSAAGNI--VRQIDYGLNLDFFSPQVAPDGTITLRIRGQVNQPATAITADSLPNLID 670 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + +A +T+ +G TI+++GLL + G+P LS +P +GA F R + ++++ Sbjct: 671 FTNSEAQSTITFKNGQTILMSGLLGSTETTNRSGVPFLSSLPGVGAAFGEKRTEKTQSQL 730 Query: 411 FIAATPFLVK 420 + T +VK Sbjct: 731 LVIITGTVVK 740 >gi|282890888|ref|ZP_06299405.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499242|gb|EFB41544.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus] Length = 955 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 115/326 (35%), Gaps = 60/326 (18%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---------------------------------- 219 QV +++ I + D G Sbjct: 623 RQVFIEMLILDSSLDDSLNYGVNWGTRFGGGDTAGSQAFLSSASTLPGALDTTGIANTNG 682 Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 TG P+ + A G + G G L SF ++ A+ T+ + P + Sbjct: 683 ISTGQILTPNANTLARTPGYNLGIVGQTVSVGNLTFQSFGALVKAIHDKTSTNIVMNPKI 742 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTG-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A +A G Y+T S S T+ + G L TP + + + L I Sbjct: 743 LAEDNVTAEIFVGENTQYQTQSISNDQGSVITTNFEYRNIGTTLKITPFLGNNDIVTLEI 802 Query: 333 QTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + EVS NA + P+ R+ + T V +P +V++G+++D + + +P Sbjct: 803 RQEVSSVASTTNAQALNNITPGPTTRLSRTTTRVHVPDKYFLVISGMVQDQETRRRVSVP 862 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDD---HYSVE----- 437 L +P++GA F + E+ + I P ++ +++L++ Y E Sbjct: 863 CLGGLPVIGAAFSDKNVTDEKRNLMIFIRPEIIDTEEEVQNLTKHQQDLFRYKCETKRSW 922 Query: 438 ----DDAKAFFFNRVNKIYGPKEASE 459 D+A FF R Y EA E Sbjct: 923 KYEVDEALDFFNLRSTNKYEACEACE 948 >gi|90410268|ref|ZP_01218284.1| general secretion pathway protein D precursor [Photobacterium profundum 3TCK] gi|90328509|gb|EAS44793.1| general secretion pathway protein D precursor [Photobacterium profundum 3TCK] Length = 406 Score = 137 bits (344), Expect = 6e-30, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 110/282 (39%), Gaps = 12/282 (4%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVT 201 VL + + Q A + + + S ++ NL+ QV + Sbjct: 131 QAVLTAYSKNTGEMQTAYSVITLPNINAMIVTGSPSQLTQIDNLIKRVDVRRKQVLIDAV 190 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + + R + IG + +G K +GG+ + D+ ++ Sbjct: 191 VMDTRLGDSESIGVSLDVLLEGAGFRLISNPVSSIKESFKGGNI----IYDKGDVSALVT 246 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----VTTHDYGVVLH 317 A+ + + L++P L + + S G + + ++ S + + G+ L Sbjct: 247 AITQNQNTKLLSKPYLLVMDREKGSINVGQNVPFLVSTETSNNGSLVQKIERQNVGLGLS 306 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P ++ + L I S A D+ + R+ +T V++ G +I+L GL+ D+ Sbjct: 307 VVPHIV-NDSVVLGINQTSSSVSDSDIASDIIT-NNREINTVVQVLDGQSIILGGLVSDE 364 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++ + G+PLL IP +G LFR + +++ + ++ Sbjct: 365 SRKSESGVPLLKDIPWIGGLFRTTSDKSVSSQMSVLIKVTVI 406 >gi|149200052|ref|ZP_01877077.1| ComE [Lentisphaera araneosa HTCC2155] gi|149136810|gb|EDM25238.1| ComE [Lentisphaera araneosa HTCC2155] Length = 813 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 71/420 (16%), Positives = 155/420 (36%), Gaps = 88/420 (20%) Query: 60 LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 L+V +D V ++DP D + T++ +V + + ++G G + + ++ + Sbjct: 407 LKVKIDNHAVYIADP---DYPLEETETVFF---DVPLSMIEVVGDAGDGLTDDGLVRDSG 460 Query: 120 IAHLEMTLRR----FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + + ++ F A + I + +V+ IQ +R ++ Sbjct: 461 ETNWQDYFQKSGVTFPAGAKISFVSNVNRLVVTNTAANIQLIKRIIDELGR--------- 511 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-----SSSGPSKSF 230 Q++++ +V + +++GF TG + + F Sbjct: 512 ----------------PSAQISVETKFIDVDFNTTQELGFMWRWTGPRTPNHTLTGDRIF 555 Query: 231 AADFGGKFVSEGGDFSVKGV------------------LDRFSFETVLHALERATAIRTL 272 A G +E D +++G+ + ++ AL+++ L Sbjct: 556 AQSNDGATAAERFDNNIRGINEIVTSQEGPVQLAADLVFGNQELQMMVRALDQSDTSEVL 615 Query: 273 AEPTLTAISGQSASFTSGGQHLYKT-------VSSSTGATSVTT---HDYGVVLHFTPTV 322 + P SG + + + + T+ T D GV+L TP V Sbjct: 616 SSPNAVTQSGNTVVLRVVEERFLPEEWEEAQLDADAIIPTTPTFGEARDIGVILEVTPEV 675 Query: 323 LSPGR-IGLRIQTEV-----------SEPVIGVNAGDMPSY--------RVRKADTTVEL 362 + I + + + S+ ++ P++ +R+ +T ++ Sbjct: 676 SADNNTISMDLNPQQVELLGYDTELNSDLTNFTDSITYPNFFNYAMPIVSIRQVETRAQI 735 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G T+++ GL+K+ + + + IP +S IP LG F+N E+T + I T L+ PV Sbjct: 736 WDGETLLIGGLVKETVYSVDDSIPYVSDIPYLGRFFQNKGERSEKTNLLIFVTGRLISPV 795 >gi|237738589|ref|ZP_04569070.1| general secretion pathway protein D [Fusobacterium sp. 2_1_31] gi|229424072|gb|EEO39119.1| general secretion pathway protein D [Fusobacterium sp. 2_1_31] Length = 514 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 59/310 (19%), Positives = 118/310 (38%), Gaps = 37/310 (11%) Query: 132 ADSNIRV--EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 D ++V E + + V ++ + V +E + ++ + ++ ++ Sbjct: 218 PDEVLKVLHETFGENI----KVSSLNKVNKLVVSAERDILENAIS---------IIEDID 264 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 QV + I ++ ++ +++GF +S S A GK G S+ Sbjct: 265 -KNPKQVKISSQILDISNNLFEELGFDWVYRQNVASEERNSLTAIILGKAGLNGVGSSLN 323 Query: 249 GVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 V + T L+ LE + + PTL SG+ F + + ++ Sbjct: 324 IVRQFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENK 383 Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------- 353 T + G+++ P + I L I E+S+ N ++ Sbjct: 384 NDRHTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDINSGTYNSEG 443 Query: 354 -----RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R T V + +G TI++ GL K Q ++ IP+L IPI+ F+N+ RE + Sbjct: 444 GSKVGRALTTKVRVKNGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENS 503 Query: 409 EIFIAATPFL 418 +++I + Sbjct: 504 DMYIKLKVEI 513 >gi|320155169|ref|YP_004187548.1| type IV pilus biogenesis protein PilQ [Vibrio vulnificus MO6-24/O] gi|319930481|gb|ADV85345.1| type IV pilus biogenesis protein PilQ [Vibrio vulnificus MO6-24/O] Length = 594 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 108/282 (38%), Gaps = 46/282 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++N L+I QV ++ I V L ++G + T + + Sbjct: 313 REIINSLDIP-VKQVQIEARIVTVNEGNLDELGVRWGFTSINGSTTVGGSIENNLATIGL 371 Query: 230 -----------------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETV 259 + + F V + + Sbjct: 372 YNAGSGSGSGDSGSGGSGSEGGSASIDDFLNVNLAATSANASSIAFQVAKLGSDLLLDLE 431 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L AL+R + ++ P L + + A G + Y SSS+GAT+V+ + L T Sbjct: 432 LSALQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATTVSFKKAVLSLKVT 490 Query: 320 PTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 P + R+ L + P ++ G+ + ++ T V + +G T+VL G+ + Sbjct: 491 PQITPDNRLVLDLSVTQDRPGEIVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHS 550 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 I + +PLL +P+LGALFR S N + E+ I TP ++ Sbjct: 551 ITNTTDKVPLLGDLPLLGALFRRSYENVGKRELLIFVTPKVI 592 >gi|189424531|ref|YP_001951708.1| type II and III secretion system protein [Geobacter lovleyi SZ] gi|189420790|gb|ACD95188.1| type II and III secretion system protein [Geobacter lovleyi SZ] Length = 792 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 65/326 (19%), Positives = 119/326 (36%), Gaps = 40/326 (12%) Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------EDQVTLKV 200 D+++A L T L ++++ V + ++ E +V L V Sbjct: 281 NHLDAKKAANLIRTMLQVRRLYINEDANALVVRDTSDVTDVIEKILEAHDLPEAEVVLDV 340 Query: 201 TIAEVRRDILKQIGF---QHSITGSSSGPSKSFAADFGGKFVSEGG-------------- 243 + E+ +G + + + PS A S Sbjct: 341 EVIEISDKNAHNVGLLLSNYDVQLGAFSPSNELLATTLKDTTSTTSTTVTTDATIKNLVK 400 Query: 244 DFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 FS+ + + + L+ P + + + A F G + T + +T Sbjct: 401 AFSINSFGGYVTVPNAQYNFGKTLANGEVLSNPKIRVKNKEKAKFNVGTRVPITTTTMAT 460 Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYR 352 +V D GV ++ PT+ + +++ EVS + G + + Sbjct: 461 TGTTSQVNVQYVDVGVKVNAEPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTIG 520 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R DT + L G T V+ GL+ K+ I LL IP++G L NS+ + ++TE+ + Sbjct: 521 TRNLDTVLSLKDGETSVIGGLISHSNSDSKQKIFLLGDIPLIGPLLSNSKTDNDKTELIL 580 Query: 413 AATPFLVKPVAMRDLSRPDDHYSVED 438 A TP LV+ V + + S ED Sbjct: 581 AITPRLVRGVTVPRGNLTSFSSSKED 606 >gi|182414666|ref|YP_001819732.1| type II and III secretion system protein [Opitutus terrae PB90-1] gi|177841880|gb|ACB76132.1| type II and III secretion system protein [Opitutus terrae PB90-1] Length = 895 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 41/224 (18%) Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + G ++ GV+ F V+ AL + L+ P +T +SG A+ T + Y Sbjct: 653 LGAGPLATISGVIGEFDVNAVVRALSQQQGTDLLSAPKVTVLSGNPATITVAQEMRYPQS 712 Query: 299 SSSTGAT----------------------SVTTHDYGVVLHFTPTVLSPG-RIGLRIQTE 335 T + T + GV L TPTV I L + + Sbjct: 713 FGQTQSQVGTGNASGGGSAGVAITAGTPQEFTKRNIGVELRVTPTVEEDDYSISLDLNPK 772 Query: 336 VSE---------PVIGVNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDD 377 V+E P I ++ P + VR T V + G T+V+ GL +++ Sbjct: 773 VTEFDGFVEYGGPSIAISGSTTVTVPSGFYQPIFSVRDIATKVTIWDGATLVMGGLTREE 832 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 ++++ + +P+L +P++G FR+ + ++ + I T LV P Sbjct: 833 VKKVNDKVPILGDLPLIGRAFRSKGESAQKRNLLIFVTANLVNP 876 >gi|294781789|ref|ZP_06747122.1| general secretion pathway protein D [Fusobacterium sp. 1_1_41FAA] gi|294481899|gb|EFG29667.1| general secretion pathway protein D [Fusobacterium sp. 1_1_41FAA] Length = 514 Score = 136 bits (343), Expect = 7e-30, Method: Composition-based stats. Identities = 54/310 (17%), Positives = 118/310 (38%), Gaps = 37/310 (11%) Query: 132 ADSNIRV--EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 D ++V E + + V ++ + V +E + ++ + ++ ++ Sbjct: 218 PDEVLKVLRETFGENI----KVSSLSKVNKLVVSAERDILENAIS---------IIEDID 264 Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249 QV + I ++ ++ +++GF + + ++ G S Sbjct: 265 -KNPKQVKISSQILDISNNLFEELGFDWVYRQNIASEERNTLTAIILGKAGLNGVGSTLN 323 Query: 250 VLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ +F+ T L+ LE + + PTL SG+ F + + ++ Sbjct: 324 IVRQFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENK 383 Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------- 353 T + G+++ P + I L I E+S+ N ++ Sbjct: 384 NDRHTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDVNSGTYNSEG 443 Query: 354 -----RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 R T V + +G TI++ GL K Q ++ IP+L IPI+ F+N+ RE + Sbjct: 444 GSKVGRALTTKVRVKNGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENS 503 Query: 409 EIFIAATPFL 418 +++I + Sbjct: 504 DMYIKLKVEI 513 >gi|281356804|ref|ZP_06243295.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316931|gb|EFB00954.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 836 Score = 136 bits (343), Expect = 7e-30, Method: Composition-based stats. Identities = 62/314 (19%), Positives = 112/314 (35%), Gaps = 74/314 (23%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----------------- 224 V++ L E V + E+ +D LK++ F + +T + Sbjct: 501 DTVIHELLDQQEPMVQILCKFIEISQDDLKELAFNYQLTVNGGAEANVMENGKYPRDVKF 560 Query: 225 GPS-----------KSFAADFGGKFVSEGGDFS-VKGVLDRFSFETVLHALERATAIRTL 272 GP+ + + D + FS V D + L AL +A ++ L Sbjct: 561 GPNSNELLRYYRDETNSSGDSSTGNPTYNSTFSYVWQNADGTAIVANLFALNQADSMDVL 620 Query: 273 AEPTLTAISGQSASFTSGGQHLYK------------TVSSSTGATSVTTHDYGVVLHFTP 320 P +T + GQ A + + T S G+ T++ G+ P Sbjct: 621 GAPRVTTLPGQPAHIEMVTERYFPEDWEIVDLPNNNTGGSGDGSNEGTSYWRGISADPQP 680 Query: 321 TVLSPGR---IGLRIQTEVSEPVIGVNA------------------------------GD 347 S I IQ E+ + + A Sbjct: 681 NFESEPTKLGIVFDIQPEIDKERRTITAHVLLPVQTLSGWMIFDARTYDSDGNTDGEYYQ 740 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 MP + R +T + + G T+VL G+ +D ++ + + IP+L +PI+G LF++ + ++ Sbjct: 741 MPIFDKRSIETDITVYDGETVVLGGVAQDKVEIVNDKIPVLGDLPIVGRLFQSKYTDSQK 800 Query: 408 TEIFIAATPFLVKP 421 + + T LVKP Sbjct: 801 RNLLVFLTCRLVKP 814 >gi|171909907|ref|ZP_02925377.1| Type II secretory pathway component, protein D [Verrucomicrobium spinosum DSM 4136] Length = 665 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 64/300 (21%), Positives = 108/300 (36%), Gaps = 44/300 (14%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-----SKSFAADFGGKFVSEGGDFSV 247 + Q+ ++V E RD K+ G S T SG S + + G + V+ Sbjct: 270 QSQIAIEVKFFETSRDPAKEFGVDWSGTFGQSGLFRQVDSVTSDPETGQQTVNTTNIAQT 329 Query: 248 KG---------------------------VLDRFSFETVLHALERATAIRTLAEPTLTAI 280 +G VL L A+ + RT++ P + Sbjct: 330 EGGYRADLSNLLSLGNLNEAKAFLAPSTAVLSAQDVNIKLRAMLKDQETRTVSYPRMVTT 389 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + + S S+ST + ++ G V++ P + +I L + Sbjct: 390 NNREVVIRSVVNQPVLGGSASTSLGTGSTTTSSISYLPIGTVINILPKRMMDDKINLNLA 449 Query: 334 TEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 VS + + P R VEL +G T+ + GL + Q+ ++GIP+L KI Sbjct: 450 ITVSSIIGTEVIQGNPYPVASSRVYSAPVELNNGYTVAVGGLDEAREQEGEQGIPVLGKI 509 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 PILG F+ + + I TP L+ +RD P+ SV + +I Sbjct: 510 PILGYAFKTKGKAKNHKNLMIFITPSLI---DVRDGGLPEKPQSVLPRKPEELMPKTPRI 566 >gi|21241188|ref|NP_640770.1| HrcC protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106496|gb|AAM35306.1| HrcC protein [Xanthomonas axonopodis pv. citri str. 306] Length = 607 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 87/241 (36%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGK-----FVSEGG 243 + TI E+R ++ +G TG+ SG F G GG Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGNGSGGQLGFNGALSGAATDGATTPAGG 429 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + T + ALE + ++ P + + A Q + S Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGYA 487 Query: 304 ATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + + GV L P+V G++ L ++ E + +P + T Sbjct: 488 SADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQA 546 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606 Query: 421 P 421 P Sbjct: 607 P 607 >gi|83647801|ref|YP_436236.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC 2396] gi|83635844|gb|ABC31811.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC 2396] Length = 615 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 28/330 (8%) Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTV-VLHGM-VRTIQDSQRAVELSETFLSQ 170 ++++ + L L S + V VL G + S ++ Sbjct: 198 EVVVPGMASVLRGALAAGQGKSGET--SIGGPVGVLEGKRTSSPVTSDMPGTGERAWVEA 255 Query: 171 SGRNQYANSSS--------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 GR K ++ L+ E QV + V+I V LK++G Sbjct: 256 DGRTNSIIVYDRLERMPMYKALVRNLDQPSE-QVEVNVSIISVSATNLKELGVSWQARDQ 314 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---------FETVLHALERATAIRTLA 273 G D ++ + G FS F ++AL + ++ Sbjct: 315 KLGEFGYGGIDKQNPAPNKNQLAILGGADATFSTVLDSGLDYFIAKVNALVEDGDAQVVS 374 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGL 330 P++ A + + G VL TP + I L Sbjct: 375 RPSVVTSEHLEAVLDDSTTFHVRV--QGNEQVDLFPVTVGSVLRVTPHIQRGEEQKGINL 432 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + E G +P + +T + G ++++ G +D + G+PLL Sbjct: 433 EVTIE-DGQQTGEEVDRIPVIKTSSINTQTVVGLGQSLLIGGFFQDYESESVGGVPLLKD 491 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+LGALFR + NR++ TP ++ Sbjct: 492 IPLLGALFRTTNHNRKKMVKLFLMTPKIID 521 >gi|163786002|ref|ZP_02180450.1| type II general secretion pathway (GSP) D protein [Flavobacteriales bacterium ALC-1] gi|159877862|gb|EDP71918.1| type II general secretion pathway (GSP) D protein [Flavobacteriales bacterium ALC-1] Length = 718 Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 106/288 (36%), Gaps = 22/288 (7%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 + + D + VEL+ +++ +G K+ + ++ A + ++V I E + Sbjct: 434 EITSGLDHKIDVELNSIYVTGTGAKIELF---KEFIRSIDKAIPV-ILIEVMIVEAQTSN 489 Query: 210 LKQIGFQHSITGSSSGPSKSF----AADFGGKFVSEG-GDFSVKGVLDRF----SFETVL 260 + G + + S G + ++ FS V + +F + Sbjct: 490 TLEAGVTWGLGTEPATTEGSLFPTTDVTLGAQTINRIISGFSSTSVFNFGKVVPNFFATV 549 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--GATSVTTH-------D 311 A+E ++ + P L ++G ASF++G Y V +T TT D Sbjct: 550 KAMETNGDLKIKSTPKLATLNGHRASFSNGQTSYYAVVQRNTIGNDNPQTTEIRNYFPVD 609 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + L P V + L I S + P R + V + VL Sbjct: 610 AKLGLEIKPYVTGNKEVLLNINVVQSNFGQRIAEDAPPDINSRDFSSVVRMKDQDIAVLG 669 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GL ++ G+P L++IP++ LF ++++ + P ++ Sbjct: 670 GLEENYSNNSGSGVPFLARIPLIKWLFSKRVREGRKSKLTVFIKPTVI 717 >gi|30524891|gb|AAP34336.1|AF499777_4 HrcC [Xanthomonas axonopodis pv. glycines] Length = 607 Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 87/241 (36%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGK-----FVSEGG 243 + TI E+R ++ +G TG+ SG F G GG Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGNGSGSQLGFNGALSGAATDGATTPAGG 429 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + T + ALE + ++ P + + A Q + S Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGYA 487 Query: 304 ATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + + GV L P+V G++ L ++ E + +P + T Sbjct: 488 SADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQA 546 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606 Query: 421 P 421 P Sbjct: 607 P 607 >gi|282899176|ref|ZP_06307153.1| pilQ(type II and III secretion system protein) [Cylindrospermopsis raciborskii CS-505] gi|281195931|gb|EFA70851.1| pilQ(type II and III secretion system protein) [Cylindrospermopsis raciborskii CS-505] Length = 522 Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 17/264 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKS 229 G Q + ++ K+ N L+I QV + + I +V ++ F I + + Sbjct: 258 GNPQLVDIATSKLTN-LDIR-RRQVKVNLKIIDVNLWGIQNYNSSFSFGIGDNFFSNDQG 315 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASF 287 A G G SV L F L A + L +P+L GQ+A+ Sbjct: 316 IATFNFGNQRPFTGSGSVPASLGGLPNRFLAFLQAQVTNGNAKILTDPSLIVQEGQNANV 375 Query: 288 TSGGQHL-------YKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP 339 Q + T +S + + G+ ++ + G + L + V P Sbjct: 376 KLTQQVIGQERITRIDTPGNSREERIIEKEEVGLTVNVRVERIDDNGFVSLSVAPVVKSP 435 Query: 340 VIGVN--AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 V + AG + R ++ + L G T++L+G+++D + + +PLL IP+LGA Sbjct: 436 VNSESPGAGKVTLIAERSLNSGLIRLRDGQTLLLSGIIQDQDRTVVTKVPLLGDIPLLGA 495 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 LFR++ +RE E+ + TP +++ Sbjct: 496 LFRSTNKDRERREVIVLLTPRIIE 519 >gi|322435311|ref|YP_004217523.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] gi|321163038|gb|ADW68743.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] Length = 819 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 58/326 (17%), Positives = 111/326 (34%), Gaps = 18/326 (5%) Query: 117 ERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 D + LR + + + + +V+ G + +Q+ + + + + Sbjct: 274 ANDGNEILTGLRLLLDPTVKLYLVPSQNAIVMRGTTDELLLAQKLINDFDRARPEVVVDV 333 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 S+ + L I + L ++ S T +SS + S ++ Sbjct: 334 AVLEVSRDKVRTLGITLPQSIGLTPQLSNANSTSTTSSTTTTSTTTTSSTTTSSTSSLTL 393 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 + L+AL R L P + A GQ A+ G + Sbjct: 394 NNLAHLNATNFAVSITGG-----TLNALLTDGDTRILQNPRIRATDGQRATLKIGSKIPI 448 Query: 296 KTVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-- 343 T S + G T T D GV + TPTV + ++++ EVS V Sbjct: 449 ATGSYNAGVSTGVASIGVQTQFTYIDVGVNIDITPTVHYDREVSMKMKIEVSSQSNTVVI 508 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + P R ++ +++ G +LAG+L + G P L ++P F Sbjct: 509 SGVSEPIISQRISEQVIQVQDGEPSILAGILTHQDSKTVSGTPFLGELPFFKYFFSTQSK 568 Query: 404 NREETEIFIAATPFLVKPVAMRDLSR 429 ++ E+ P +V+ + L+ Sbjct: 569 ETQQDELVFLIIPHVVRESVLTRLNT 594 >gi|90412668|ref|ZP_01220670.1| putative type II secretory pathway, component EpsD [Photobacterium profundum 3TCK] gi|90326476|gb|EAS42888.1| putative type II secretory pathway, component EpsD [Photobacterium profundum 3TCK] Length = 406 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 110/280 (39%), Gaps = 12/280 (4%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIA 203 VL + + Q A + S + S ++ NL+ QV + + Sbjct: 133 VLTAYSKNTGEMQTAYSVITLPNINSMIVTGSPSQLTQIDNLIKRVDVRRKQVLIDAVVM 192 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + R + IG + +G K +GG+ + D+ ++ A+ Sbjct: 193 DTRLGDSESIGVSLDVLLEGAGFRLISNPVASIKESFKGGNI----IYDKGDVSALVTAI 248 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----VTTHDYGVVLHFT 319 + + L++P L + + + G + + ++ S + + G+ L Sbjct: 249 TQNQNTKLLSKPYLLVMDREKGAINVGQNVPFLVSTETSNNGSLVQKIERQNVGLGLSVV 308 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 P ++ + L I S A D+ + R+ +T V++ G +I+L GL+ D+ + Sbjct: 309 PHIV-NDSVVLAINQTSSSVSDSDIASDIIT-NNREINTVVQVLDGQSIILGGLVSDESR 366 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + G+PLL IP +G LFR + +++ + ++ Sbjct: 367 KSESGVPLLKDIPWIGGLFRTTSDKSVSSQMSVLIKVTVI 406 >gi|225874512|ref|YP_002755971.1| type II/III secretion system protein [Acidobacterium capsulatum ATCC 51196] gi|225792554|gb|ACO32644.1| type II/III secretion system protein [Acidobacterium capsulatum ATCC 51196] Length = 786 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 74/382 (19%), Positives = 139/382 (36%), Gaps = 54/382 (14%) Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 V +P T+++ + + L + ++ + D ++ LR ++I Sbjct: 218 YRVITPNTIFV-AADTRAKRMQLEDQAVQTFYLHNVTQQSDFTDIQTALRNVFQTAHIFG 276 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + +V+ + + ++++ L+ + V + Sbjct: 277 VASQNAIVMRATPDELLLA------------------------RQLIGQLDQPKPE-VLV 311 Query: 199 KVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAADFGGKFVSEGGDFSVK 248 V + EV R+ ++IG Q T + SS S S ++ S + Sbjct: 312 DVAVLEVSRNFERKIGLQLPQTATVNLQASTSSSSSSSSSSSSSSSSSSSTSSSLTLNNL 371 Query: 249 GVLDRFSFETVL-----HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 L+ +F + L T + + EP + A GQ A G + T S TG Sbjct: 372 AHLNSNNFAVTIGQAEADLLLTNTDTQIIQEPRIRASDGQDAQLKIGEKLPVATGSYQTG 431 Query: 304 A----------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSY 351 A T D GV + PTVLS + ++++ +VS N G + P Sbjct: 432 AATAIVSSLVNTQFQYLDVGVNIDVKPTVLSDRDVSMKVKIDVSSTNGTENLGGVDEPII 491 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R AD T+ L +G ++ G+ + G P LS++P+L +F + ++ Sbjct: 492 TQRVADETIRLKNGEANLIGGIRQVQTSNSLSGTPGLSELPLLKYIFGVHDHTVSKDDLV 551 Query: 412 IAATPFLVK-PVAMRDLSRPDD 432 I P +V P + +P D Sbjct: 552 ILLIPHVVSAPTTNPNDLQPID 573 >gi|94969024|ref|YP_591072.1| type II and III secretion system protein [Candidatus Koribacter versatilis Ellin345] gi|94551074|gb|ABF40998.1| type II and III secretion system protein [Candidatus Koribacter versatilis Ellin345] Length = 764 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 58/318 (18%), Positives = 119/318 (37%), Gaps = 23/318 (7%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + L T+R + + ++ +V+ G + Q+ ++ + + Sbjct: 257 LQDLVNTIRTIVEVNRVQQLPTQGAIVVRGTPDQVALVQKLIDDIDKARPEVVVEVAVMQ 316 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 SK M L I ++ V++A L ++ +++G G Sbjct: 317 VSKTKMRNLGIQPPS--SISVSMA----SNLSSNNNNNNNNNNNNGNGNGNGTGTGTDNS 370 Query: 240 SEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + G + L+ +F + L + + P++ A+ GQ A+ G + Sbjct: 371 NGGISLNDLAHLNATNFILTVPTATANFLFSDADTKLIQNPSIRAVDGQKATLKIGDRIP 430 Query: 295 YKTVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 T S G T D GV + TP + + + +++ +VS N Sbjct: 431 VATGSFQPGIGGVGINPLVNTQFNYIDVGVNIDITPRIHANNEVSMKLVLDVSSVTGYQN 490 Query: 345 AGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + P+ RK + + L G +L G+L+ + + G+P LS+IP+L F Sbjct: 491 IGGIQQPTIGQRKIEHEIRLKDGEINLLGGILQSEDDKTIAGLPYLSQIPLLRYFFSTDN 550 Query: 403 FNREETEIFIAATPFLVK 420 + ++E+ P +V+ Sbjct: 551 KTKSDSEVVFVVIPHIVR 568 >gi|149917610|ref|ZP_01906107.1| type II and III secretion system protein [Plesiocystis pacifica SIR-1] gi|149821673|gb|EDM81071.1| type II and III secretion system protein [Plesiocystis pacifica SIR-1] Length = 777 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 80/208 (38%), Gaps = 11/208 (5%) Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 S + S G + + G ++ D +F V+ AL+ + +AEP + Sbjct: 467 SPAALSGLAGGLIGPQLIGTGAQLGLER--DIPAFGVVIQALQSNDDVNIVAEPHIYTAD 524 Query: 282 GQSASFTSGGQHLYKT---------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + A G + +S T S+ D + + TP V + L I Sbjct: 525 NKEAQIEVGRKVPTPGALQFGGAGGGTSLTPLQSINREDVTLDIKVTPHVKDETSLTLDI 584 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + E + V + + + R V +VL GL+++ + + +P L IP Sbjct: 585 ELEDRDVVDQDPVLGVTTTKRRIKLENVLARDDLPVVLGGLMRERELENTQQVPGLGSIP 644 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420 ILG LF+ +E+ + I P +V+ Sbjct: 645 ILGWLFKRRVKQKEKINLLIVLIPHVVE 672 >gi|223936189|ref|ZP_03628102.1| type II and III secretion system protein [bacterium Ellin514] gi|223895051|gb|EEF61499.1| type II and III secretion system protein [bacterium Ellin514] Length = 906 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 69/340 (20%), Positives = 120/340 (35%), Gaps = 97/340 (28%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----------------------SI 219 +K + LN+A Q+ +K E+ ++ K +GF + Sbjct: 546 EKAIQTLNVA-PPQINIKAKFIEITQNDSKALGFDWFLGNFLLGGGKLGAQGGTAPSFAG 604 Query: 220 TGSSSGPSKSFAAD--------------------------FGGKFVSEGGDF-----SVK 248 S++ PS F GG + G +V Sbjct: 605 APSTANPSGVFPGSPATIDPVTGLGSLPTTIPPSTSDQLITGGLRNTAGTATVPTIATVT 664 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---------- 298 G+L F + ALE+ + L P +T SG+ A + T Sbjct: 665 GLLTDPQFRVAIRALEQRDGVDLLTAPDVTTESGRQAQIQAIDIQTIVTGQQFGQGANGA 724 Query: 299 -------------SSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIG-- 342 +++T + T +G VL P V + + + I V+E V Sbjct: 725 NAASGVGSTVIQNTATTSQYTTQTLPFGPVLDVIPYVSADEFSVQMTIIPTVTEFVQYDP 784 Query: 343 -----------------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 V A +P +R+R+ T+V + T+VL GL+ D + ++K+ + Sbjct: 785 PGPFVPQASAIAGGTSVVGALPLPHFRMRQVTTSVTVWDSQTVVLGGLITDSVTKIKDQV 844 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 PLL +P +G LFR+ + + + I TP ++ P R Sbjct: 845 PLLGDMPFVGRLFRSESSQKTKKNLVIFVTPTIINPDGSR 884 >gi|22299887|ref|NP_683134.1| putative general secretion pathway protein D [Thermosynechococcus elongatus BP-1] gi|22296072|dbj|BAC09896.1| tlr2344 [Thermosynechococcus elongatus BP-1] Length = 719 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 96/264 (36%), Gaps = 34/264 (12%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQ---------HSITGSSSGPS--KSFAADFGGKFVSE 241 + QV + V +V + SS G S + + G Sbjct: 424 KRQVMVNVKFIDVNLSRTRTANADLITNFGSGLWGAIFSSEGLSVIRGTTPNVGSLTPQP 483 Query: 242 GGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSA------SFTSGGQHL 294 F V +F + L PTL G +A SG Q Sbjct: 484 LPPFPGTPVGSLLSNFFAQIQLAIDTGNATILTNPTLVIQEGSAAQVNLTQEIFSGIQST 543 Query: 295 YKTVSSSTGATSVTT------HDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGVN--- 344 + ++ +GA + GV+ + T + G I L++ EVS P + Sbjct: 544 VSSQATGSGAAITSQQITPIIRPAGVIFNVTVDQIDDNGFITLQLSPEVSAPTDTYDVVF 603 Query: 345 -AGDMPSYRV----RKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 D PS R+ ++ + L G T++LAG+++D + +P+L IP+LG LF Sbjct: 604 PGVDNPSIGTLLAQRRMESGRIRLRDGQTLMLAGIIQDQDRSTVTKVPILGDIPLLGRLF 663 Query: 399 RNSRFNREETEIFIAATPFLVKPV 422 R +R+ E+ + TP ++ Sbjct: 664 RRESNSRQRNELVVMVTPKIIDDT 687 >gi|293416358|ref|ZP_06658997.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B185] gi|291431714|gb|EFF04697.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B185] Length = 566 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 109/259 (42%), Gaps = 25/259 (9%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ LL++A + V L + I ++ ++ L+Q+G G S SF+ + Sbjct: 296 LVRLLDVA-KRHVELSLWIIDLNKNDLEQLGVAW-------GGSTSFS-----NKLDIAL 342 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + ++ LD F ++ALE+ R +++P L A F + K + Sbjct: 343 NQTLVSTLDGVHFLASVYALEKKNQARIVSKPVLMTQENVPAIFDNNRTFYTKLIGERNS 402 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE----VSEPVIGVNAGDMPSYRVRKADTT 359 + + T YG ++ P + G I + + E + V G +P T Sbjct: 403 SLAHVT--YGTMISVLPRFSADGEIEMSLNIEDGNEEKQSVSGNEDSVLPEVGRTHISTV 460 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +P G ++++ G +D + + IPLL IP++G LFR N+ FL+ Sbjct: 461 ARVPQGKSLLIGGYTRDSRTKDVQKIPLLGDIPLIGGLFRYENQNQNN-----VVRVFLI 515 Query: 420 KPVAMRDLSRPD-DHYSVE 437 +P + D PD D ++ E Sbjct: 516 QPKEILDPLMPDADVFAAE 534 >gi|313142359|ref|ZP_07804552.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131390|gb|EFR49007.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 505 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 100/275 (36%), Gaps = 34/275 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADF 234 + + L+ + QV + V I + + G ++ + G SF + Sbjct: 217 ESYIQSLHQRLQKQVLIDVHILSITHNNTNTTGINWDELYNLQNLIIPAFGEGASFGGNG 276 Query: 235 GGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQS 284 S KGV + S ++ LE + +++ P + ++ Q Sbjct: 277 EVGNTSGINIVGQKGVSNLHYGINIFSQGLSLNRIIEFLESYGKVESISNPKVLTLNNQP 336 Query: 285 ASFTSGGQHLYK--TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQT 334 A + G Y+ T+ +T A + T+ GV+L TP V I L+I Sbjct: 337 AMISVGDILRYQKNTIYQNTNAQTTLTNTDNEYPSLFAGVLLDITPLVF-GEEIMLKINP 395 Query: 335 EVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 +++ + P+ + + V + + ++L GL+ + + IP+L Sbjct: 396 SITKTKENRTEIPNTAFETPPNLTTNQLSSIVSVKNNQKVILGGLISKNFATKENKIPIL 455 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 IP++ LF S+ EI P +++ Sbjct: 456 GSIPLIKPLFSYSQEVENTEEIVFIIEPKIIQAQD 490 >gi|260888944|ref|ZP_05900207.1| hypothetical protein GCWU000323_00103 [Leptotrichia hofstadii F0254] gi|260861391|gb|EEX75891.1| putative general secretion pathway protein D [Leptotrichia hofstadii F0254] Length = 399 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 68/305 (22%), Positives = 125/305 (40%), Gaps = 40/305 (13%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 R++ + L F I ++ + V+ G +++ +R ++ + Sbjct: 119 RNVKDITEALNGFFGFEVIGID---NKVIFSGDESKVEEMKRIIKSLDK----------- 164 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGG 236 ++Q+ +K TI + ++ +++G SI ++S +K + A F Sbjct: 165 --------------EKEQIIIKGTIIDTSSNLFERLGIDWSINSNNSNATKDNLVAKFLN 210 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295 VS FS G F + L+ IR A PTL + + + L Sbjct: 211 GEVSIASIFSKGGRFLGIDF----NLLKENGDIRIEAMPTLMIMENEEGELKVTEEVLVG 266 Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVNAGDMP- 349 KT T + G+V P + +I L+I TE+S + + Sbjct: 267 EKKTTKKDTEYVEPIFSEAGIVFRINPEIRKINGIKKILLKIDTEISNFKLTSSYNASSG 326 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + + TT+ L +GG+ + GL +D ++ +P+LSKIPI+G LF+ R NRE + Sbjct: 327 AKQKNQTKTTITLNNGGSTFIGGLKQDVSKETIRRVPVLSKIPIIGPLFKYRRTNREMRD 386 Query: 410 IFIAA 414 I+I Sbjct: 387 IYIEI 391 >gi|224418841|ref|ZP_03656847.1| putative type II secretion system D [Helicobacter canadensis MIT 98-5491] gi|253828170|ref|ZP_04871055.1| secretion system protein [Helicobacter canadensis MIT 98-5491] gi|253511576|gb|EES90235.1| secretion system protein [Helicobacter canadensis MIT 98-5491] Length = 496 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 100/275 (36%), Gaps = 34/275 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADF 234 + + L+ + QV + V I + + G ++ + G SF + Sbjct: 208 ESYIQSLHQRLQKQVLIDVHILSITHNNTNTTGINWDELYNLQNLIIPAFGEGASFGGNG 267 Query: 235 GGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPTLTAISGQS 284 S KGV + S ++ LE + +++ P + ++ Q Sbjct: 268 EVGNTSGINIVGQKGVSNLHYGINIFSQGLSLNRIIEFLESYGKVESISNPKVLTLNNQP 327 Query: 285 ASFTSGGQHLYK--TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQT 334 A + G Y+ T+ +T A + T+ GV+L TP V I L+I Sbjct: 328 AMISVGDILRYQKNTIYQNTNAQTTLTNTDNEYPSLFAGVLLDITPLVF-GEEIMLKINP 386 Query: 335 EVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 +++ + P+ + + V + + ++L GL+ + + IP+L Sbjct: 387 SITKTKENRTEIPNTAFETPPNLTTNQLSSIVSVKNNQKVILGGLISKNFATKENKIPIL 446 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 IP++ LF S+ EI P +++ Sbjct: 447 GSIPLIKPLFSYSQEVENTEEIVFIIEPKIIQAQD 481 >gi|119897096|ref|YP_932309.1| general secretion pathway protein D [Azoarcus sp. BH72] gi|119669509|emb|CAL93422.1| general secretion pathway protein D [Azoarcus sp. BH72] Length = 580 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 63/291 (21%), Positives = 115/291 (39%), Gaps = 28/291 (9%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 +D+ V E+ + +S + ++ + A QV ++ TI EV Q G Sbjct: 259 KDADAVVSNRESGVLVVRATARQHSRIAEFIDAVQRAARRQVMIEATIVEVALGDEYQQG 318 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G+ + + + S + L LE + + L+ Sbjct: 319 IDWRRLGNPNWRVAARGSGDANALTPTLSYLS-------DRLDVRLDLLETFGSAKILSS 371 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTG------------ATSVTTHDYGVVLHFTPTV 322 P L+ ++ Q+A + +Y V +ST T+ + G+V+ T V Sbjct: 372 PRLSVLNNQTAMLKVVEEVVYFLVDASTTQYDDADREKTTATTTPQSVSVGMVMALTAQV 431 Query: 323 LSPGRIGLRIQTEVS---------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + G I L ++ +S P +G +P R R+ ++ + L SG T VL GL Sbjct: 432 SAGGEIILNVRPTISSISGFKDDPNPSLGSIPNRVPQIRTREIESVLRLRSGETAVLGGL 491 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 ++D + IPLL +P+LG +F + +E+ I P +V+ A+ Sbjct: 492 IEDKVDYDTGRIPLLGSLPLLGEVFSHRDNAVRRSELVIFLRPVVVEDPAL 542 >gi|167948310|ref|ZP_02535384.1| General secretion pathway protein D [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 251 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 11/216 (5%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGGKF 238 S + + L++ QV ++ TIAEV G + + G+ G K + Sbjct: 37 SVEATIRKLDVP-PMQVLIEATIAEVSLTNNLSYGVRWFLQGNMGGSDKWQGGLNLPLPS 95 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G FS+ + + + L ++++ L+ P + + QSASF G Q T Sbjct: 96 GVSGSGFSLGILNSMDELKLFFNLLNAQSSVKFLSAPQIMVVDNQSASFRVGDQIPIITR 155 Query: 299 SSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMP 349 SS + T V D G +L TP V G + L I EVS+P V G Sbjct: 156 SSQSTTNPDAPIVTEVQFRDTGTLLTVTPRVNVGGMVTLEISQEVSKPGSAPAVGGGGNV 215 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 R D+TV + SG TI+L GL+ + K+GI Sbjct: 216 PIAQRTVDSTVVVNSGQTIILGGLISETSNDTKDGI 251 >gi|225166011|ref|ZP_03727761.1| Type II secretory pathway component PulD-like protein [Opitutaceae bacterium TAV2] gi|224799746|gb|EEG18225.1| Type II secretory pathway component PulD-like protein [Opitutaceae bacterium TAV2] Length = 693 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 111/311 (35%), Gaps = 53/311 (17%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV ++ + +Q+G ++ + V G + + G+ Sbjct: 378 RPVQQVLIEARFITISEAAFQQLGLNWETNRPTTSARSATDYTSIATTVGFGLEKTFTGI 437 Query: 251 L--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------------- 295 + S L A+E++ +TL+ P LT I+ + A+ G Y Sbjct: 438 FGSNSDSLTATLTAIEQSGESQTLSAPRLTVINNRPATIRDGKTQYYYEEYQVSQTILEN 497 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAGDM------ 348 ++ SS + T GV L ++ GR I L ++ VS+ V V + Sbjct: 498 RSTSSLVPSGKPTKLSAGVSLDVLASIGGDGRSIMLALKPSVSQDVELVTFATVSDLDSS 557 Query: 349 -----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 P R ++ T V + SG T+V+ G++++ E +P+L IP LGAL Sbjct: 558 GRVVSTFDIKLPQSRDQEISTRVIVQSGETVVMGGVIENVQSTFTESVPVLGAIPYLGAL 617 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 FR + + I T L+ F R N G +E Sbjct: 618 FRTKTEVSKPRYLLIFVTATLLSETGE--------------------FVRYNNAPGTEET 657 Query: 458 SEVEGQNYKGA 468 + ++ +G Sbjct: 658 PRTQRRSRRGT 668 >gi|325917024|ref|ZP_08179263.1| HrcC protein [Xanthomonas vesicatoria ATCC 35937] gi|325536775|gb|EGD08532.1| HrcC protein [Xanthomonas vesicatoria ATCC 35937] Length = 606 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGK-----FVSEGG 243 + TI E+R ++ +G TG G + G GG Sbjct: 369 QIDATIIEIRDGAMQDLGVDWRFHSRRVDVQTGDGRGGQLGYDGTLSGAAAAGATSPLGG 428 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + T + ALE+ + ++ P + + A Q + S Sbjct: 429 TLTAVLGDAGRYLMTRVSALEQTNKAKIVSTPQVATLDNVEAVMDHKQQAFVRV--SGYA 486 Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + + GV L P+V+ G++ L ++ E + +P + T Sbjct: 487 SADLYNLSAGVSLRVLPSVVPGSSNGQMRLDVRIE-DGQLGANTVDGIPVITSSEITTQA 545 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D Q +P LSKIP++G LF++ + + + TP +V Sbjct: 546 FVNEGQSLLIAGYASDTDQTDLNKVPGLSKIPLIGNLFKHRQQSGSRLQRLFLLTPHIVS 605 Query: 421 P 421 P Sbjct: 606 P 606 >gi|238023720|ref|YP_002907952.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia glumae BGR1] gi|237878385|gb|ACR30717.1| Type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia glumae BGR1] Length = 605 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 56/270 (20%), Positives = 102/270 (37%), Gaps = 33/270 (12%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-------------SSG 225 + ++ L++ V ++ I E+ + L+QIG GS +S Sbjct: 338 GQYEDLIRQLDVR-PQIVEIQAHIIEIDDNTLQQIGVDWRAHGSHLDFQTGNGQAAQNSF 396 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL-----------HALERATAIRTLAE 274 + FG + G V + V+ +AL+ + + A Sbjct: 397 STGQLNPTFGSVQQAGPGSTIVNATPAGAAISAVVGGAGRYLLASVNALQSNSKAKIDAT 456 Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330 P + + A+ + + + +S SV+T GV L P ++ RI L Sbjct: 457 PLVATLDNVEATMDNTTKFYVRVQGYTSADLYSVST---GVSLRVLPLIVHDRDGTRIKL 513 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + E + + ++P + +T + G ++++AG D G+P LSK Sbjct: 514 SVHIE-NGSLTQQQVDNIPVITTSQINTQAFVGEGESLLIAGFTTDKTANGVTGVPFLSK 572 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420 IP+LGALFRN+ E TP ++ Sbjct: 573 IPLLGALFRNNSDQHNHNETVFLLTPRIID 602 >gi|170738269|ref|YP_001779529.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia cenocepacia MC0-3] gi|169820457|gb|ACA95039.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia cenocepacia MC0-3] Length = 588 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 99/264 (37%), Gaps = 30/264 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADFGGK 237 ++ L++ + ++ I EV ++Q+G + S +G +GG Sbjct: 329 PALIQRLDVK-PRLIEIEAHIFEVDTSSIRQLGVNWTAHNSHIDLQTGNGLGAQNTYGGT 387 Query: 238 FVSEGGDFSVKGVLDRFS-----------------FETVLHALERATAIRTLAEPTLTAI 280 G+ ++ G + + + ALE + A P +T + Sbjct: 388 LTQNFGNTTLAGNVTAAAMPVGGVLSAVIGNAGRYLMANVSALEEQNLAKIDASPKVTTL 447 Query: 281 SGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV 336 A + Q + +S SV+T GV L P V+ G +I L + + Sbjct: 448 DNIEADMANQTQFFVRVSGYTSADLYSVST---GVSLRVLPMVVDEGGRTQIKLDVAIQ- 503 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + ++P +T+ + G +++AG D G+P+LSKIP++G Sbjct: 504 DGQLTSRTVDNIPVISSTNINTSAFVNEGEALLIAGYKNDGRIDTTTGVPVLSKIPVIGN 563 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 LF+ + E TP +++ Sbjct: 564 LFKYTDRENTRMERLFLLTPRIIE 587 >gi|91762809|ref|ZP_01264774.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1002] gi|91718611|gb|EAS85261.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1002] Length = 518 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 92/268 (34%), Gaps = 38/268 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------GSSSGPSKSFAA 232 KV+ ++ + QV ++ I E + +G + G+ G S A+ Sbjct: 259 DKVIREIDKRTK-QVLIEAFIVEATSTFEQSLGKRLGAAYTRKSLRMGGTQGGSSVGAAS 317 Query: 233 DFGGKFVSEGGDFSVKGVLDRFS---------------------FETVLHALERATAIRT 271 G G F+ D + L LE +T Sbjct: 318 GTGAALSDSTGAFTSGAGTDNLVNFGSAAATSGIGILKKTGSAVLKLELDFLEAQGLSKT 377 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 ++ P L + Q AS G G D + L TP ++ G + L Sbjct: 378 VSNPKLFTLDNQQASINQGETIYI-----DGGEGEDKPVDASLKLIVTPNIIGDGNVMLS 432 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 IQ P A + +T + + G +V+ G+ K+++ ++G+P SK+ Sbjct: 433 IQVNNDTPNRANAAS--VGVNKMEINTKLLVADGDIVVIGGIKKNNVANNRQGVPGTSKV 490 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 PILG + + E+ + P ++ Sbjct: 491 PILGKVLSGKSNSDTMNELLVFIAPRIL 518 >gi|257487975|ref|ZP_05642016.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 243 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 95/235 (40%), Gaps = 13/235 (5%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 ++ G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I Sbjct: 19 NIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLI 78 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + +G++ L + + A + L+ S R+ V+ G V+ + ++ Sbjct: 79 ALDSEGRETAALSLAVSSSTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDL 138 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI- 219 L LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 139 NAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNAL 188 Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272 G+ S + A S + + +L AL+ + L Sbjct: 189 FNNGTFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVL 243 >gi|116071978|ref|ZP_01469246.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. BL107] gi|116065601|gb|EAU71359.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. BL107] Length = 744 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 8/194 (4%) Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL- 294 G+ + G K SF + + A+ +++ +TLA+PTL GQ A +G + Sbjct: 527 GRPIYVAGKDPNKFSYPENSFYSYVEAVIESSSAKTLAQPTLLVQEGQEAEVQTGTSVIT 586 Query: 295 -YKTVSSSTGATSVTT--HDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350 T +S G+T + G+ L + G + L I E+S P + + Sbjct: 587 SVSTTDTSNGSTQFEYSRENAGLSLKVKVSKIDDNGFVSLNIDPEISVPEPAGESNGVAI 646 Query: 351 YRV--RKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + + R + ++ L T++L G+++D +++ P+L +P++G LFR++ R + Sbjct: 647 FNIVGRSLSSGSIRLRDRQTLILTGVIQDQDKEIARKWPILGDLPVIGQLFRSTDSQRSK 706 Query: 408 TEIFIAATPFLVKP 421 E+ I TP +V Sbjct: 707 NELVILVTPMIVDD 720 >gi|9885640|gb|AAG01463.1|AF282857_12 hrcC gene product [Pantoea stewartii subsp. stewartii] Length = 677 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 56/272 (20%), Positives = 91/272 (33%), Gaps = 18/272 (6%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++N ++I ++ V + I ++ R L ++ T S + G FVS Sbjct: 297 QLINKIDIP-QNLVEIDAVIIDIDRTALNRLEANWQATLGGVTGGTSLMSGSGTLFVS-- 353 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D F + ALE +A P++ + Q A ++ Sbjct: 354 ---------DFKRFFADIKALEGEGTASIVANPSVLTLENQPAVIDFSQTAYI--TATGE 402 Query: 303 GATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + G L TP + I L I E V N G + T Sbjct: 403 RVADIQPVTAGTSLQVTPRAVGHQDHASIQLVIDIEDGH-VETNNDGQATGVKRGTVSTQ 461 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + +VL G ++ + IPLL IP LG LF ++R + E TP L+ Sbjct: 462 ALISENRALVLGGFHVEESGERDRRIPLLGDIPWLGRLFTSTRHEISQRERLFILTPRLI 521 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 D+ DA A R + + Sbjct: 522 GDQTDPTRYVSADNRQQLSDAMARVERRHSNV 553 >gi|163757297|ref|ZP_02164392.1| type II general secretion pathway (GSP) D protein [Kordia algicida OT-1] gi|161322754|gb|EDP94108.1| type II general secretion pathway (GSP) D protein [Kordia algicida OT-1] Length = 721 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 104/286 (36%), Gaps = 20/286 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVRRDILK 211 D +++ + S +SS K+ N + + V ++V + +V + + Sbjct: 435 PADLIADLQIEADYELNSFYVSGPSSSVKRFRNFVEKIDKPVPVVLIEVMLIDVSKLSVV 494 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---------TVLHA 262 + G I + S S + + + G SF + A Sbjct: 495 ETGISWGIGDEPTQTSGSLFPTTNLTLGANTVNRVIGGFDGFGSFNLGKVVPEFFANISA 554 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTGATSVTTHDYG 313 +E+ I+ + P ++ ++G A+ ++G Y ++ T+ D Sbjct: 555 MEQDGDIKIRSTPKISTLNGHRATLSNGTTSYYAVTQRNIYGTNNPQTSEITNYYPIDAE 614 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + + P V G++ L I S ++ P R+ + + + VL G+ Sbjct: 615 LGISIKPIVSGDGQVTLDIFVIQSTFGSRISEDAPPDISSREFRSIIRMRDQDIAVLGGI 674 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + + G+P L++IP++ F + ++++ + P ++ Sbjct: 675 EEKQKRDEGNGVPFLARIPVIKWFFSKRKRQDSKSKLTVLIKPTVI 720 >gi|34498052|ref|NP_902267.1| type III secretion system EscC protein [Chromobacterium violaceum ATCC 12472] gi|34103907|gb|AAQ60267.1| type III secretion system EscC protein [Chromobacterium violaceum ATCC 12472] Length = 495 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 11/223 (4%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + V I +V L +G S + S G SF + +G D + + Sbjct: 272 IEVSVMIIDVNSQDLSALGIDWSASASIGGNGISFNS-----AGQQGSDNFSTVISNTGG 326 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L+AL++ + L+ P++ + A + T + + + G + Sbjct: 327 FMVKLNALQQKAKAQILSRPSVVTLDNTQAVLD--RNITFYTKLLAEKVAKLESISTGSL 384 Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371 L TP ++ G + L + + V+ +P + T L +G +++L Sbjct: 385 LRVTPRLVDEGGQRNVMLTLVIQDGRQAGTVSQHEPLPQTLNAEVSTQTLLKAGQSLLLG 444 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 G ++D+ + + IPLL IP++G LFR+++ N T Sbjct: 445 GFVQDEHSEGESKIPLLGDIPLIGKLFRSTQKNSRSTVRLFLI 487 >gi|116620187|ref|YP_822343.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223349|gb|ABJ82058.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 872 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 12/176 (6%) Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----------ATS 306 L + + L P L A+ A+ G + T S G T Sbjct: 435 AATLQLVLSDGNTKVLQSPQLRAVDNVKATLKIGDRQPTATGSFQPGIGGVGINPLVNTQ 494 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPS 364 T D GV + TP V G + + I ++S VN G + P RK + + Sbjct: 495 FTYIDVGVNVELTPRVHDNGDVSMHIDLDISSVTGHVNLGGIDQPIIGQRKVSHDIRMHE 554 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G +LAGL K + K GIP L+ +PI+G LF +RE E+ IA P +V+ Sbjct: 555 GSVQLLAGLTKWQDTKTKTGIPGLANVPIIGRLFSGESVDRERQELMIALIPHIVR 610 >gi|71082769|ref|YP_265488.1| type II secretion PilQ [Candidatus Pelagibacter ubique HTCC1062] gi|71061882|gb|AAZ20885.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1062] Length = 518 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 92/268 (34%), Gaps = 38/268 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------GSSSGPSKSFAA 232 KV+ ++ + QV ++ I E + +G + G+ G S A+ Sbjct: 259 DKVIREIDKRTK-QVLIEAFIVEATSTFEQSLGKRLGAAYTRKSLRMGGTQGGSSVGAAS 317 Query: 233 DFGGKFVSEGGDFSVKGVLDRFS---------------------FETVLHALERATAIRT 271 G G F+ D + L LE +T Sbjct: 318 GSGAALSDSTGAFTSGAGTDNLVNFGSAAATSGIGILKKTGSAVLKLELDFLEAQGLSKT 377 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 ++ P L + Q AS G G D + L TP ++ G + L Sbjct: 378 VSNPKLFTLDNQQASINQGETIYI-----DGGEGEDKPVDASLKLIVTPNIIGDGNVMLS 432 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 IQ P A + +T + + G +V+ G+ K+++ ++G+P SK+ Sbjct: 433 IQVNNDTPNRANAAS--VGVNKMEINTKLLVADGDIVVIGGIKKNNVANNRQGVPGTSKV 490 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 PILG + + E+ + P ++ Sbjct: 491 PILGKVLSGKSNSDTMNELLVFIAPRIL 518 >gi|226326440|ref|ZP_03801958.1| hypothetical protein PROPEN_00288 [Proteus penneri ATCC 35198] gi|225205223|gb|EEG87577.1| hypothetical protein PROPEN_00288 [Proteus penneri ATCC 35198] Length = 601 Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 84/246 (34%), Gaps = 22/246 (8%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 +++ L+ + QV L + I ++ ++ +G SS S F Sbjct: 112 LIDQLDKP-KRQVELSLWIIDISKNKADSLGIDWQAGYSSGNHSFFF------------- 157 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + S +F + AL + ++ P L A F + + Sbjct: 158 NTSSLSAASGLNFLGKIRALTEDGDAKMVSRPILLTQENTPAIFDNNTTFYTQIKGERVA 217 Query: 304 ATSVTTHDYGVVLHFTPTV-LSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKAD 357 TT +G ++ P + S I + I E + +P Sbjct: 218 TLESTT--FGTMMSVLPRIGNSNKEIEMIINLEDGAEKKDDKAKDETVESLPVINRTNIS 275 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + GG++++ G ++D + IP+LS IP++G LF N ++ P Sbjct: 276 TVARVSEGGSLLIGGYTREDNINAETKIPVLSSIPLIGGLFSYKSDNNKKMVRIFMLQPR 335 Query: 418 LVKPVA 423 L+ Sbjct: 336 LLDNTE 341 >gi|86130937|ref|ZP_01049536.1| general secretion pathway protein D [Dokdonia donghaensis MED134] gi|85818348|gb|EAQ39508.1| general secretion pathway protein D [Dokdonia donghaensis MED134] Length = 728 Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 102/287 (35%), Gaps = 21/287 (7%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVRRDILK 211 QD ++ + + S A++ K+ + + V ++V I EV ++ Sbjct: 441 PQDVKQDLNIIVDKELNSFIVSGASADIKRFKEFIQDIDKQVPIVIIEVMILEVSKNSTL 500 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------RFSFETVLHA 262 G + I S + + + + + + +F + A Sbjct: 501 DAGIEWGIGQEPSVTQGNIFPNTNLSLGASTINRILGRIDGSSFFNIGQVGPNFFATIRA 560 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------TGATSVTTHDYG 313 E + P +T ++G A F++G Y+ + + + D Sbjct: 561 SETNGNFNIKSSPRITTLNGHRAYFSNGRTSYYEITQNQFVGVQNPVVSESVDYVPIDAE 620 Query: 314 VVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 + L P V G + + I+ + S V P R+ + ++ + +VL G Sbjct: 621 LSLEVLPFVSEDGEVTMDIKVIQSSFSGERVTENGPPEISSREFTSIIKSRTNDIVVLGG 680 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L +D G+P L++IPI+ LF ++++ + P ++ Sbjct: 681 LEEDSKNNSGSGVPFLARIPIIKWLFSKRVRTASKSKLTVLIKPTVI 727 >gi|220932103|ref|YP_002509011.1| type II and III secretion system protein [Halothermothrix orenii H 168] gi|219993413|gb|ACL70016.1| type II and III secretion system protein [Halothermothrix orenii H 168] Length = 385 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 100/244 (40%), Gaps = 24/244 (9%) Query: 182 KKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 +K++NL+ + Q+ + V ++EV LK++G PS + D G V Sbjct: 158 EKIINLIKRIDKPRKQIKITVVVSEVSTKELKKLGTGFLEYREKDNPSLNLKYD-GSSLV 216 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G F + T L L+ + A+P++ + G+ A G + Sbjct: 217 LNGNIFE--------NLLTRLEILQEEEKAKIHADPSIVVMDGEPAELFIGEKQTLFITE 268 Query: 300 SSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK- 355 + G+ L TP ++S + L +S V +P VR+ Sbjct: 269 DE----EIEYFKDIKVGISLKVTPRLISKDEMILDFSPSISHFVNS----KLPEIAVREN 320 Query: 356 -ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 DTTV + SG T V+AG+ D K+ +P L+KIP+L LF + + E+ I Sbjct: 321 TLDTTVRVASGQTAVIAGMTLQDDYNYKKSVPGLNKIPLLRWLFTKKVNDTGDRELLIFV 380 Query: 415 TPFL 418 TP + Sbjct: 381 TPTI 384 >gi|294625827|ref|ZP_06704443.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599855|gb|EFF43976.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 607 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + TI E+R ++ +G TG G F G ++G V Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVG 428 Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G L + + ALE + ++ P + + A Q + S Sbjct: 429 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486 Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + GV L P+V G++ L ++ E + +P + T Sbjct: 487 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQ 545 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 605 Query: 420 KP 421 P Sbjct: 606 SP 607 >gi|294055468|ref|YP_003549126.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] gi|293614801|gb|ADE54956.1| type II and III secretion system protein [Coraliomargarita akajimensis DSM 45221] Length = 906 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 128/325 (39%), Gaps = 53/325 (16%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN-----LLNIAGEDQVTLKVTIAE 204 V+ ++ + +E+++ L + G + ++ +++ +L+ G V + ++ Sbjct: 542 EVKQVEIEAKFLEVAQNDLEELGFDWTVGEGAQTIVDEFGAPVLDQFGNPTVAYQRNVST 601 Query: 205 VRRDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET-- 258 R + + + + G S + + + + + Sbjct: 602 QGRTLADAFSADTASSAINITDVFGNESSVSTQPPANPSTIDLAANAASLFTATGWSMFG 661 Query: 259 -----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---------TVSSSTGA 304 + A+ R + ++ P +T +SG+ A+ T + Y S++ G Sbjct: 662 ADVNLAIRAIARQSGSDLMSAPKVTVLSGKRANITVAQELRYPESYGDIESTVSSNNNGG 721 Query: 305 TSVTT----------HDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNA 345 +++ + GV L TP V + I L ++ V+E P + + + Sbjct: 722 AAISITAGTPEDFVVRNVGVELAVTPNVENDDTISLILEPRVTEFEGFVEYGGPSVALAS 781 Query: 346 GDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 G P + R+ T V + G TIV+ GL +D+++ +++ +P+L IP LG Sbjct: 782 GTTVTVPAGFYQPVFSTREISTEVTIFDGATIVMGGLTRDEVKYIEDKVPVLGDIPALGR 841 Query: 397 LFRNSRFNREETEIFIAATPFLVKP 421 LFR+ R++ + I T +V P Sbjct: 842 LFRSEGETRQKRNLLIFVTANMVSP 866 >gi|294665979|ref|ZP_06731242.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604227|gb|EFF47615.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 607 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + TI E+R ++ +G TG G F G ++G V Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVG 428 Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G L + + ALE + ++ P + + A Q + S Sbjct: 429 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486 Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + GV L P+V G++ L ++ E + +P + T Sbjct: 487 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQ 545 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 605 Query: 420 KP 421 P Sbjct: 606 SP 607 >gi|86605695|ref|YP_474458.1| type IV pilus secretin PilQ [Synechococcus sp. JA-3-3Ab] gi|86554237|gb|ABC99195.1| putative type IV pilus secretin PilQ [Synechococcus sp. JA-3-3Ab] Length = 723 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 92/257 (35%), Gaps = 28/257 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADF----GGKFVSEGGD 244 QV + E+ D +G + SG + F G V G Sbjct: 467 SRQVLISARFIEINLDNNSSLGVALGSASGNFALGSGDNTVFGGTPLDQPAGSSVPNVGS 526 Query: 245 FSVKGVLDRF----------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 F G S + A + + LA+P + + A+ G + + Sbjct: 527 FPAAGTGGSLVFNTLNRLQQSLAARIDAAIASGTAKILADPKVVVANNTGAAIVVGQEVI 586 Query: 295 YKTVSSSTGATSVTTH-----DYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348 + AT ++T + GV L + G I L + ++S + D Sbjct: 587 TNRRLQTDPATGISTVVFEKGNAGVNLLIQNVRIDDNGYITLNLLPQISSIGSQITLSDG 646 Query: 349 PSY---RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 R T L T+ L GL++++ + + +PLLS+IP+LG+LFR Sbjct: 647 TVISLLNQRSVGTLQTRLKDRETLFLGGLIQEEDRVSVDKVPLLSEIPLLGSLFRRQNTT 706 Query: 405 REETEIFIAATPFLVKP 421 +E+ + TP +++ Sbjct: 707 NTRSEVVVLITPVILED 723 >gi|159024044|gb|ABW87272.1| HrcC [Xanthomonas fuscans subsp. fuscans] Length = 607 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + TI E+R ++ +G TG G F G ++G V Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVG 428 Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G L + + ALE + ++ P + + A Q + S Sbjct: 429 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486 Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + GV L P+V G++ L ++ E + +P + T Sbjct: 487 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQ 545 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 605 Query: 420 KP 421 P Sbjct: 606 SP 607 >gi|886477|emb|CAA90274.1| SepC [Escherichia coli] Length = 512 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 110/262 (41%), Gaps = 29/262 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ L+I + Q+ + V+I +V + L+Q+G S T ++ + +F + + Sbjct: 263 QQLISELDI-EQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TA 315 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + S + + +F ++AL++ + + L++P++ ++ A + T S Sbjct: 316 QVNISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILD--KNVTFYTKVSG 373 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------------RIQTEVSEPVIGVNAG 346 S+ + G +L TP +L L ++ + Sbjct: 374 EKVASLRSITSGTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASS 433 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 +P + + T L +G LA L K K+GIPLLS IP++G+LF ++ + Sbjct: 434 TLPEVQNSEMTTEATLSAGKVYYLADLSKIKKVPSKDGIPLLSDIPVIGSLFSSTVKQKH 493 Query: 407 ETEIFIAATPFLVKPVAMRDLS 428 FL+K ++ S Sbjct: 494 S-----VVRLFLIKATPIKSAS 510 >gi|7416860|dbj|BAA94087.1| hypersensitive response secretion protein [Xanthomonas oryzae pv. oryzae] Length = 605 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + TI E+R ++ +G TG G F G ++G V Sbjct: 368 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPVG 426 Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G L + + ALE + ++ P + + A Q + S Sbjct: 427 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 484 Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + GV L P+V G++ L ++ E + +P + T Sbjct: 485 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEIKTQ 543 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 544 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 603 Query: 420 KP 421 P Sbjct: 604 SP 605 >gi|282896843|ref|ZP_06304849.1| pilQ(type II and III secretion system protein) [Raphidiopsis brookii D9] gi|281198252|gb|EFA73142.1| pilQ(type II and III secretion system protein) [Raphidiopsis brookii D9] Length = 522 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 115/264 (43%), Gaps = 17/264 (6%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKS 229 G Q + ++ K+ N L+I QV + + I +V ++ F I + + Sbjct: 258 GNPQLVDIATSKLTN-LDIR-RRQVKVNLKIIDVNLWGIENYNSSFSFGIGDNFLSNDQG 315 Query: 230 FAA-DFGGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASF 287 A +FG + G ++ + F L A + L +P+L GQ+A+ Sbjct: 316 IATFNFGNQRPFTGSGSVPTSLVGLPNRFLAFLQAQVTNGNAKILTDPSLIVQEGQNANV 375 Query: 288 TSGGQHL-------YKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP 339 Q + T +S + + G+ ++ + G I L + V P Sbjct: 376 KLTQQVIGQEKITRIDTPGNSREERIIEKEEVGLTVNVRVERIDDNGFISLSVAPVVKSP 435 Query: 340 VIG--VNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 V AG + R ++ + L G T++L+G+++D + + +PLLS IP+LGA Sbjct: 436 VNSESTGAGKVTLIAERSLNSGLIRLRDGQTLLLSGIIQDQDRSVVTKVPLLSDIPLLGA 495 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 LFR+++ +RE E+ + TP +++ Sbjct: 496 LFRSTKKDRERREVIVLLTPRIIE 519 >gi|58579717|ref|YP_198733.1| hypothetical protein XOO0094 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84621739|ref|YP_449111.1| HrcC protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|7350909|gb|AAC95122.2| HrpA [Xanthomonas oryzae pv. oryzae] gi|9711580|dbj|BAB07849.1| HrpA [Xanthomonas oryzae pv. oryzae] gi|24251284|gb|AAN46403.1| HrcC [Xanthomonas oryzae pv. oryzae] gi|50428343|dbj|BAD29980.1| HrcC [Xanthomonas oryzae pv. oryzae] gi|58424311|gb|AAW73348.1| HrcC protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365679|dbj|BAE66837.1| HrcC protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|118076671|gb|ABK60047.1| HrcC [Xanthomonas oryzae pv. oryzae] Length = 605 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + TI E+R ++ +G TG G F G ++G V Sbjct: 368 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPVG 426 Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G L + + ALE + ++ P + + A Q + S Sbjct: 427 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 484 Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + GV L P+V G++ L ++ E + +P + T Sbjct: 485 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEIKTQ 543 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 544 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 603 Query: 420 KP 421 P Sbjct: 604 SP 605 >gi|46447532|ref|YP_008897.1| putative protein of the general secretion pathway [Candidatus Protochlamydia amoebophila UWE25] gi|46401173|emb|CAF24622.1| putative protein of the general secretion pathway [Candidatus Protochlamydia amoebophila UWE25] Length = 829 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 98/269 (36%), Gaps = 30/269 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+++ L++ + V ++ + E G G + + Sbjct: 487 KELLRKLDVP-KKMVQIETLLFEKILTRENTFGLNLLKIGEHIAKNTNLTGATFNNIFPV 545 Query: 242 GGDFSVK--GVLDRF-----------SFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G+F+ GV D +F+ L ++ + P++ ++ A+ Sbjct: 546 KGEFTPANAGVFDFLLSRKQTSSGIPAFDLAYRFLLSQDDVQINSNPSILTMNQTPATIA 605 Query: 289 SGGQHLYKT----VSSSTGAT---SVTTHDYGVVLHFTPTVLSP--------GRIGLRIQ 333 T V ++ G T + T YG+ + PT+ + ++ Sbjct: 606 VNEDISINTGIFEVETAKGTTLKDAFTRAQYGITISVKPTIHLNQHDTEDEWDFDYVTLE 665 Query: 334 TEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 T+++ I P R V++P G TI+L GL + K+ IP L ++P Sbjct: 666 TDITFDTIHAGGDRSRPDVTRRHITNQVQVPDGDTIILGGLRRKTTNDNKDSIPFLGELP 725 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKP 421 LG LF + +E+FI TP +VK Sbjct: 726 GLGKLFSTNSLKDSSSEMFIFITPHIVKD 754 >gi|291086622|ref|ZP_06356285.2| type III secretion outer membrane pore, YscC/HrcC family [Citrobacter youngae ATCC 29220] gi|291067473|gb|EFE05582.1| type III secretion outer membrane pore, YscC/HrcC family [Citrobacter youngae ATCC 29220] Length = 505 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 72/405 (17%), Positives = 153/405 (37%), Gaps = 39/405 (9%) Query: 36 VINISDVEIGKGKKISIGLNKVIIL-QVPVDVQDV-------LVSDPTKADVVVHSPRTM 87 V N + + G + +G+++ + VP V+ + V+ ADV Sbjct: 124 VRNSNLLSSGTCQLKQVGVSQSFEIYGVPECVRHITDIANQLSVAVRNMADVDQRRENVQ 183 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 K +V D ++ + + R++ + + ++ TV Sbjct: 184 VFPLKYASATDVNYQYRDQTVVIPGVVSVLREMNNSQAVNSGATPT---QLNAGQQTVDN 240 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 +G + Q AV + + ++ +++++ L+ +D + + V+I +V Sbjct: 241 NGPTFSADPRQNAVVVRDRDINMP--------MYQRLISQLDHR-QDAIEITVSIIDVNA 291 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + L +G + G + + GG ++ + + F + ALE+ + Sbjct: 292 EDLGALGIDWAANADIGGMNLQLNTNLA-----SGGGYATSVINNGSDFMVKVSALEQKS 346 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + L++P++ ++ A K V + T G ++ TP V+ Sbjct: 347 QAKILSQPSVVTLNNVQAVLDKNTTFYTKLVGDKIAQLASITS--GTLMQVTPRVVKDDE 404 Query: 328 ------IGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + L IQ + V A D MP + + DT L SG +++L G ++D Sbjct: 405 GTAEVLLLLSIQDGSQQQSSAVVAADAMPQVQNSEIDTQATLKSGQSLLLGGFIQDQDIV 464 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 + IP+L I +G F++ + +T FL+K V ++ Sbjct: 465 TERKIPILGDIYWIGNFFKSKETTKIQT-----VRLFLIKAVPLK 504 >gi|120555550|ref|YP_959901.1| type II and III secretion system protein [Marinobacter aquaeolei VT8] gi|120325399|gb|ABM19714.1| type II and III secretion system protein [Marinobacter aquaeolei VT8] Length = 733 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 14/259 (5%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V ++V +AEV + + +G + S S + G G +++ Sbjct: 471 VLMEVVLAEVTLNDNQGMGVEWLARNSVGDLSGTLETLGGLGIGGRGFSYTLNSAGQT-- 528 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--------- 306 VL+A + + P + SG++A+ G + T + + + Sbjct: 529 -RAVLNAFYDSNQAVIRSSPKIMVKSGETATIEVGNEIPVLTSTRQSDTQTDGDTDVLQQ 587 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSG 365 GV L P V + G + +RI+ +SE +P+ R +T++ L G Sbjct: 588 FQYRKTGVDLTVEPIVQASGLVDIRIRQSLSETQDTSGGDSFLPTILNRAVETSLTLRDG 647 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAM 424 G++VL GL+ Q ++G+P L K+P+LG LFR + TE+ + P++V+ Sbjct: 648 GSVVLGGLISKTNSQGEQGVPWLGKLPLLGPLFRTDSDSTSTTELMVMVVPYVVRNDEEA 707 Query: 425 RDLSRPDDHYSVEDDAKAF 443 R++S A+ + Sbjct: 708 RNVSELLRERIQNSSAETW 726 >gi|332526236|ref|ZP_08402367.1| type III secretion outer membrane pore, YscC/HrcC family protein [Rubrivivax benzoatilyticus JA2] gi|332110072|gb|EGJ10700.1| type III secretion outer membrane pore, YscC/HrcC family protein [Rubrivivax benzoatilyticus JA2] Length = 318 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 93/251 (37%), Gaps = 17/251 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK 237 +++++ L++ + ++ I ++ D L+++G ++ S G + G Sbjct: 50 RQLISALDV-EPQALEIEARIVDIDTDRLRELGINWRLSSGRSSLLFGNGTNSDTLLSGS 108 Query: 238 ------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G F + ++AL+ A + ++ P + +S A F + Sbjct: 109 QRPEDITPQGKGGFLSAVLGGADELALRINALQDQGAAKVVSSPQVLTLSDVEAVFDTSR 168 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDM 348 + + + G L TP V RI L + E + + Sbjct: 169 TFYVRVAGRED--VDLFSVSAGTTLRVTPHVFRDEHGVRIKLLVAIE-DGALSQQQVDQI 225 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P +T + G ++++ GL ++ +P L IP+LG LF++S + T Sbjct: 226 PVVERASINTQALIFEGESLLVGGLTREASSNGVTKVPFLGDIPVLGNLFKSSVDSLRRT 285 Query: 409 EIFIAATPFLV 419 E +P LV Sbjct: 286 ERLFLISPRLV 296 >gi|218892331|ref|YP_002441198.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa LESB58] gi|218772557|emb|CAW28340.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa LESB58] Length = 600 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 65/312 (20%), Positives = 114/312 (36%), Gaps = 21/312 (6%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + L R ++D+ V V D G +R S AV +E L+ + + Sbjct: 204 GIASILSRVLSDA--NVVAVGDE---PGKLRPGPQSSHAVVQAEPSLNAVVVRDHKDRLP 258 Query: 182 --KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 ++++ L+ + + ++I ++ + L Q+G S G G +KS G+ Sbjct: 259 MYRRLIEALDRPSAR-IEVGLSIIDINAENLAQLGVDWSA-GIRLGNNKSIQIRTTGQDS 316 Query: 240 SEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 EGG V + L+ + + PTL A + Sbjct: 317 EEGGGAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETY 376 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MP 349 + T YG +L TP V++ G I L + E D +P Sbjct: 377 YVRVTGERVAELKAIT--YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIP 434 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + DT + G ++++ G+ +D++ Q + +P L IP LGALFR + + Sbjct: 435 TINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSV 494 Query: 410 IFIAATPFLVKP 421 P LV Sbjct: 495 RLFLIEPRLVDD 506 >gi|6016255|sp|Q01723|HRPH_PSESY RecName: Full=Hypersensitivity response secretion protein hrpH; Flags: Precursor gi|2934881|gb|AAC05014.1| envelope protein [Pseudomonas syringae] gi|148746178|gb|AAB05085.2| HrcC [Pseudomonas syringae pv. syringae] Length = 701 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 105/291 (36%), Gaps = 23/291 (7%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L+++ + + I ++ R+ L ++ + + S GG Sbjct: 305 KAMYEKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVN---------GGA 354 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LHALE + + P++ + Q A Sbjct: 355 NMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY--L 412 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S ++ G L TP L ++ L + E + I PS R Sbjct: 413 TATSERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKG 472 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + +PLL IP +G LF++ + E Sbjct: 473 NVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSQRERLFI 532 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 TP L+ D P + + +++ +I ++ E+ + Sbjct: 533 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 576 >gi|66044451|ref|YP_234292.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. syringae B728a] gi|63255158|gb|AAY36254.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. syringae B728a] Length = 700 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 105/291 (36%), Gaps = 23/291 (7%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L+++ + + I ++ R+ L ++ + + S GG Sbjct: 304 KAMYEKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVN---------GGA 353 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LHALE + + P++ + Q A Sbjct: 354 NMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY--L 411 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S ++ G L TP L ++ L + E + I PS R Sbjct: 412 TATSERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKG 471 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + +PLL IP +G LF++ + E Sbjct: 472 NVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSQRERLFI 531 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 TP L+ D P + + +++ +I ++ E+ + Sbjct: 532 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 575 >gi|313110403|ref|ZP_07796289.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa 39016] gi|310882791|gb|EFQ41385.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa 39016] Length = 604 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 114/312 (36%), Gaps = 21/312 (6%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + L R ++D+ V V D G +R S AV +E L+ + + Sbjct: 208 GIASILSRVLSDA--NVVAVGDE---PGKLRPGPQSSHAVVQAEPSLNAVVVRDHKDRLP 262 Query: 182 --KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 ++++ L+ + + ++I ++ + L Q+G S G G +KS G+ Sbjct: 263 MYRRLIEALDRPSAR-IEVGLSIIDINAENLAQLGVDWSA-GIRLGNNKSIQIRTTGQDS 320 Query: 240 SEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 EGG V + L+ + + PTL A + Sbjct: 321 EEGGGAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETY 380 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MP 349 + T YG +L TP V++ G I L + E D +P Sbjct: 381 YVRVTGERVAELKAIT--YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIP 438 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + DT + G ++++ G+ +D++ Q + +P L IP LGALFR + + Sbjct: 439 TINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSV 498 Query: 410 IFIAATPFLVKP 421 P L+ Sbjct: 499 RLFLIEPRLIDD 510 >gi|149200051|ref|ZP_01877076.1| Peptidase M41, FtsH [Lentisphaera araneosa HTCC2155] gi|149136809|gb|EDM25237.1| Peptidase M41, FtsH [Lentisphaera araneosa HTCC2155] Length = 825 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 56/302 (18%), Positives = 108/302 (35%), Gaps = 62/302 (20%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FG 235 N + ++N LN G QV ++ + ++ + ++++GF TG + P+ + D F Sbjct: 505 NQLIQDIINNLN-TGAAQVNVEAKVVDITWNAMQELGFLWRWTGPRT-PNHTLTGDRIFA 562 Query: 236 GKFVSEGGD----------------------FSVKGVLDRFSFETVLHALERATAIRTLA 273 G + + + ++ AL+++ L Sbjct: 563 QSNTPASGGERFDNNIRGINEVVTSQEGPVQLAADLIFGNQELQMMIRALDQSDTNEILM 622 Query: 274 EPTLTAISGQSASFTSGGQHLYKTV---SSSTGATSV--------TTHDYGVVLHFTPTV 322 P + SG++A + + +T + D G VL TP V Sbjct: 623 APNVLTKSGETAVIRVVTSQQFVEEWEEGEFSNSTEIVPSTPTFGEEKDIGFVLSVTPEV 682 Query: 323 LSPGRIGL---------------RIQTEVSEPVIGVNAG----------DMPSYRVRKAD 357 + + T + +N MP + VR + Sbjct: 683 DPNNTVITMEVNPEFIEFLGYDTDLNTSTELQLFDINGSPFTYQAEFIYSMPIFEVRSIE 742 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V+L G T L GL+++++ + + IP +S IP +G LF+N E+ + + T Sbjct: 743 TRVKLWDGQTFTLGGLIRENVWTVDDSIPYISAIPFVGRLFQNKGEASEKRSLLMFITAR 802 Query: 418 LV 419 L+ Sbjct: 803 LI 804 >gi|254240060|ref|ZP_04933382.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa 2192] gi|126193438|gb|EAZ57501.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa 2192] Length = 600 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 114/312 (36%), Gaps = 21/312 (6%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + L R ++D+ V V D G +R S AV +E L+ + + Sbjct: 204 GIASILSRVLSDA--NVVAVGDE---PGKLRPGPQSSHAVVQAEPSLNAVVVRDHKDRLP 258 Query: 182 --KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 ++++ L+ + + ++I ++ + L Q+G S G G +KS G+ Sbjct: 259 MYRRLIEALDRPSAR-IEVGLSIIDINAENLAQLGVDWSA-GIRLGNNKSIQIRTTGQDS 316 Query: 240 SEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 EGG V + L+ + + PTL A + Sbjct: 317 EEGGGAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETY 376 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MP 349 + T YG +L TP V++ G I L + E D +P Sbjct: 377 YVRVTGERVAELKAIT--YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIP 434 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + DT + G ++++ G+ +D++ Q + +P L IP LGALFR + + Sbjct: 435 TINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSV 494 Query: 410 IFIAATPFLVKP 421 P L+ Sbjct: 495 RLFLIEPRLIDD 506 >gi|188574359|ref|YP_001911288.1| HrpA type III secretion outer membrane pore, YscC/HrcC family [Xanthomonas oryzae pv. oryzae PXO99A] gi|188518811|gb|ACD56756.1| HrpA type III secretion outer membrane pore, YscC/HrcC family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 591 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + TI E+R ++ +G TG G F G ++G V Sbjct: 354 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPVG 412 Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G L + + ALE + ++ P + + A Q + S Sbjct: 413 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 470 Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + GV L P+V G++ L ++ E + +P + T Sbjct: 471 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEIKTQ 529 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + +P LSKIP+LG LF++ + + + TP +V Sbjct: 530 AFVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 589 Query: 420 KP 421 P Sbjct: 590 SP 591 >gi|223938170|ref|ZP_03630067.1| peptidase M56 BlaR1 [bacterium Ellin514] gi|223893214|gb|EEF59678.1| peptidase M56 BlaR1 [bacterium Ellin514] Length = 1633 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 73/359 (20%), Positives = 147/359 (40%), Gaps = 27/359 (7%) Query: 121 AHLEMTLRRFIADSNIRVE----MVSDTVVLH-------GMVRTIQDSQRAVE-LSETFL 168 A L +RR + + ++ +VL G+ + + + E +S+T Sbjct: 304 APLLQRIRRLLGQAERNPSHQAWPLAGIIVLLLVAALTIGLRSSRAVADQTQETISKTNK 363 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +GR AN+ V + ++ G Q+ ++ EV + F Sbjct: 364 LVTGRMLPANARKTFVQSDKSLTGAQLPQIVVQSKFFEVDEKDFPKAIFNLPAV-----S 418 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + A + VS + G+L ++ + LE A+ I L P++ SG+ A Sbjct: 419 NAVCAIATPWQPVSAPKEQCFTGMLTGPQYQAAVKQLEMASCIDMLTAPSVITQSGRQAQ 478 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNA 345 + + +++++ + + +G VL PTV + L V+ + + Sbjct: 479 IQAVDLI--EILTNASPSAAKMQLPFGPVLDVLPTVTPDKLGVQLTGIATVTMLLDAPSV 536 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P + + T + L G T+V+ GL+ + I +K+ +P+L+ IP+ G LFR+ ++ Sbjct: 537 V-LPRIQFTQLSTEMTLKDGQTLVMGGLMPETITIVKDRVPVLADIPLAGRLFRSGSTSK 595 Query: 406 EETEIFIAATPFLVKPVAMR---DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461 + + TP L+ P R D ++P + + + F R+ G E +EV+ Sbjct: 596 SRKYLIVFVTPTLINPDGSRYHADDTKPTEATVLPPET-LLFETRLLLDAGKIEEAEVK 653 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 66/346 (19%), Positives = 114/346 (32%), Gaps = 62/346 (17%) Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 DG Q + L+ D L+ +R F +NI + V + ++ V Sbjct: 1302 KDGTQP--VTNLVVHD-RGLQTAIRSFFEKANIDFSPTNPVNVGKSVFYNELNATLMVRT 1358 Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 ++ L + L Q+ +K E+ QI S+ G Sbjct: 1359 TQEELDLIQKE-------------LARITPPQINIKARFVEMDETAGSQITLGESMRGID 1405 Query: 224 SGPSKSFA------ADFGGKF--VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 S + S G F V+ GVL ++ + LERA + L P Sbjct: 1406 SKTNSSMTQVTTPKVSSSGSFPPVTNALALQFTGVLTPEQYKEAITRLERADGVDLLTAP 1465 Query: 276 TLTAISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 +T SG+ A + T ++T S +G VL P V + Sbjct: 1466 DVTTESGRRAQIQAVDIKTIITGLTTVYTNGTATNMLSTQNLPFGPVLDVIPKVSADDSS 1525 Query: 328 IGLRIQTEVSEPV--------IGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLK 375 I + + V+E V G D+ P +R+R+ ++ + G TI+L G+ + Sbjct: 1526 IEMNLVASVTEFVGYDDPKKLAGQKRTDVQIPLPHFRLRQLTSSASVADGHTIILGGVEQ 1585 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + + R + + + TP L+ P Sbjct: 1586 NTPGK------------------RGKEKPGKRKTLLVFVTPTLINP 1613 >gi|107101148|ref|ZP_01365066.1| hypothetical protein PaerPA_01002180 [Pseudomonas aeruginosa PACS2] gi|254234815|ref|ZP_04928138.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa C3719] gi|296389899|ref|ZP_06879374.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa PAb1] gi|1781385|gb|AAC44774.1| PscC [Pseudomonas aeruginosa] gi|126166746|gb|EAZ52257.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa C3719] Length = 600 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 114/312 (36%), Gaps = 21/312 (6%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + L R ++D+ V V D G +R S AV +E L+ + + Sbjct: 204 GIASILSRVLSDA--NVVAVGDE---PGKLRPGPQSSHAVVQAEPSLNAVVVRDHKDRLP 258 Query: 182 --KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 ++++ L+ + + ++I ++ + L Q+G S G G +KS G+ Sbjct: 259 MYRRLIEALDRPSAR-IEVGLSIIDINAENLAQLGVDWSA-GIRLGNNKSIQIRTTGQDS 316 Query: 240 SEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 EGG V + L+ + + PTL A + Sbjct: 317 EEGGGAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETY 376 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MP 349 + T YG +L TP V++ G I L + E D +P Sbjct: 377 YVRVTGERVAELKAIT--YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIP 434 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + DT + G ++++ G+ +D++ Q + +P L IP LGALFR + + Sbjct: 435 TINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSV 494 Query: 410 IFIAATPFLVKP 421 P L+ Sbjct: 495 RLFLIEPRLIDD 506 >gi|15596913|ref|NP_250407.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa PAO1] gi|9947691|gb|AAG05105.1|AE004598_4 Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa PAO1] Length = 600 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 114/312 (36%), Gaps = 21/312 (6%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + L R ++D+ V V D G +R S AV +E L+ + + Sbjct: 204 GIASILSRVLSDA--NVVAVGDE---PGKLRPGPQSSHAVVQAEPSLNAVVVRDHKDRLP 258 Query: 182 --KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 ++++ L+ + + ++I ++ + L Q+G S G G +KS G+ Sbjct: 259 MYRRLIEALDRPSAR-IEVGLSIIDINAENLAQLGVDWSA-GIRLGNNKSIQIRTTGQDS 316 Query: 240 SEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 EGG V + L+ + + PTL A + Sbjct: 317 EEGGGAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETY 376 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MP 349 + T YG +L TP V++ G I L + E D +P Sbjct: 377 YVRVTGERVAELKAIT--YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIP 434 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + DT + G ++++ G+ +D++ Q + +P L IP LGALFR + + Sbjct: 435 TINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSV 494 Query: 410 IFIAATPFLVKP 421 P L+ Sbjct: 495 RLFLIEPRLIDD 506 >gi|226356752|ref|YP_002786492.1| secretin [Deinococcus deserti VCD115] gi|226318742|gb|ACO46738.1| putative Secretin precursor (GSP D family protein) [Deinococcus deserti VCD115] Length = 690 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 29/248 (11%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ ++V I E+ + +G F G +S F L Sbjct: 451 PQINVQVRIQEITESAARSLGVNLKA------GFGGFNVSTGAGGLSAA--FDPTQSLVG 502 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSA----------------SFTSGGQHLYKT 297 F+ L+ L+ +++ + T+T SGQ A S SGG+ Sbjct: 503 FNLGATLNTLQNQGLSKSIYDGTITMQSGQRALGSTTDAQNASSTAAASIKSGGRLEINI 562 Query: 298 VSSSTGATSVTTH-DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YR 352 S + ++ DYGV L F +P V G I LR++ +V++ +NA +P+ + Sbjct: 563 PSQAANVPAIQRQIDYGVNLDFFSPQVAPDGTITLRVRGQVNDLQTAINASTIPNLLQFT 622 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +A TT+ +G T++L+GLL G+P LS IP++GALF ++T++ + Sbjct: 623 NSEAQTTLTFKNGETLLLSGLLATKESSTNSGVPFLSSIPVVGALFGQQTTRSQKTQLLV 682 Query: 413 AATPFLVK 420 T +++ Sbjct: 683 VITGNVLR 690 >gi|116049666|ref|YP_791529.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa UCBPP-PA14] gi|115584887|gb|ABJ10902.1| Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa UCBPP-PA14] Length = 600 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 114/312 (36%), Gaps = 21/312 (6%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 + L R ++D+ V V D G +R S AV +E L+ + + Sbjct: 204 GIASILSRVLSDA--NVVAVGDE---PGKLRPGPQSSHAVVQAEPSLNAVVVRDHKDRLP 258 Query: 182 --KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 ++++ L+ + + ++I ++ + L Q+G S G G +KS G+ Sbjct: 259 MYRRLIEALDRPSAR-IEVGLSIIDINAENLAQLGVDWSA-GIRLGNNKSIQIRTTGQDS 316 Query: 240 SEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 EGG V + L+ + + PTL A + Sbjct: 317 EEGGGAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETY 376 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD-MP 349 + T YG +L TP V++ G I L + E D +P Sbjct: 377 YVRVTGERVAELKAIT--YGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIP 434 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + DT + G ++++ G+ +D++ Q + +P L IP LGALFR + + Sbjct: 435 TINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSV 494 Query: 410 IFIAATPFLVKP 421 P L+ Sbjct: 495 RLFLIEPRLIDD 506 >gi|330969113|gb|EGH69179.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. aceris str. M302273PT] Length = 700 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 105/291 (36%), Gaps = 23/291 (7%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L+++ + + I ++ R+ L ++ + + S GG Sbjct: 304 KAMYEKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVN---------GGA 353 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LHALE + + P++ + Q A Sbjct: 354 NMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY--L 411 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S ++ G L TP L ++ L + E + I PS R Sbjct: 412 TATSERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKG 471 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + +PLL IP +G LF++ + E Sbjct: 472 NVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSQRERLFI 531 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 TP L+ D P + + +++ +I ++ E+ + Sbjct: 532 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 575 >gi|229588267|ref|YP_002870386.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] gi|229360133|emb|CAY46990.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] Length = 713 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 90/274 (32%), Gaps = 20/274 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + ++ L++A + + + I ++ R L++ G S F G Sbjct: 318 RDLITQLDVARKL-IEIDAIILDIERTQLREFGVNWGFQNSR----------FRGGVNMA 366 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + +R F + ALE ++ P++ + Q A Sbjct: 367 PGTSSQVSIENRDRFYADIRALEAKGLATMVSNPSVLTLENQPAVIDFNRTQYISPGRDY 426 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIG-----LRIQTEVSEPVIGVNAGDMPSYRVRKA 356 VT G L P V + + + I+ + + P R K Sbjct: 427 ATILPVT---VGTSLQVVPRVTTGRGVHQIHLVVDIEDGNFDETNPERDPNHPDVRRGKV 483 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAAT 415 T + ++V+ G D ++ IPLL IP+LG LF ++ + E T Sbjct: 484 STQAVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKTLFSSTERHNNRRERLFILT 543 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 P ++ P D + A R + Sbjct: 544 PRVIGDQDDPSRYLPQDDQAELQAALTPLARRYS 577 >gi|50508104|dbj|BAD30080.1| outer-membrane protein of Hrp(typeIII) secretion pathway [Pseudomonas syringae pv. tabaci] Length = 699 Score = 133 bits (334), Expect = 8e-29, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 104/287 (36%), Gaps = 23/287 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+++ + + I ++ R+ L ++ + + S G GG + + Sbjct: 307 EKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + + F LHALE + + P++ + Q A ++S Sbjct: 357 AGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI--TATS 414 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 ++ G L P L ++ L + E + I PS R T Sbjct: 415 ERVANIEPITAGTSLQVIPRSLDHDGKPQVQLSVDIEDGQIDISDINDTQPSVRKGNVST 474 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417 + G++V+ G + IPLL IP +G LF++ + E TP Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 L+ D P + + +++ +I ++ E+ + Sbjct: 535 LI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 574 >gi|76817445|ref|YP_335577.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1710b] gi|76581918|gb|ABA51392.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710b] Length = 630 Score = 132 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237 ++ L+I + ++ I E+ D+L++IG S G + D+ G Sbjct: 370 LIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 428 Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281 + G+ V S + AL+ + ++ A P + + Sbjct: 429 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARHLMARVSALQSTSKVKIDASPLVATLD 488 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338 A + + K S + + + GV L P ++ G RI + + Sbjct: 489 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 545 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 546 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 605 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 606 RYHSDSQNHMERVFLLSPRIIDP 628 >gi|289663772|ref|ZP_06485353.1| HrcC protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668194|ref|ZP_06489269.1| HrcC protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 593 Score = 132 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 86/241 (35%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSE-----GG 243 + TI EVR ++ +G TG G F G GG Sbjct: 356 QIDATIIEVRDGAMQDLGVDWRFHSQHTDVQTGDGRGGQLGFDGALSGAATQGTMTPVGG 415 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + T + ALE + ++ P + + A Q + S Sbjct: 416 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGYA 473 Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + + GV L P+V+ G++ L ++ E + +P + T Sbjct: 474 SADLYNLSAGVSLRVLPSVVPGSSNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQA 532 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + +P LSKIP++G LF++ + + + TP +V Sbjct: 533 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLVGNLFKHRQKSGSRMQRLFLLTPHVVS 592 Query: 421 P 421 P Sbjct: 593 P 593 >gi|271500445|ref|YP_003333470.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya dadantii Ech586] gi|270344000|gb|ACZ76765.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya dadantii Ech586] Length = 690 Score = 132 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 56/333 (16%), Positives = 110/333 (33%), Gaps = 24/333 (7%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSG----RNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 G + + + + + ++ +++++ +++ ++ V + I Sbjct: 273 SGEAASSRKKDQLNGKVSADVRNNALLIRDDEKRREEYQQLIDKIDVP-QNLVNIDAIIL 331 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 +V R L ++ + + + FVS D F + AL Sbjct: 332 DVDRTALSRLEANWQGKLGAVTGGANLMSGSSTLFVS-----------DFKRFFADIQAL 380 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E +A P++ + Q A ++ +V G L TP V+ Sbjct: 381 EGEGTASIVANPSVLTLENQPAVIDFSRTAFI--TATGERVANVQPVTAGTSLQVTPRVV 438 Query: 324 SPGR---IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 G I L I E V G+ + T + +VL G ++ Sbjct: 439 GRGSTSSIQLVIDIE-DGQVETNTEGNASGVKRGTVSTQALIGENRALVLGGFHVEESGD 497 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 + +PLL IP +G LF + + E TP L+ D+ +DA Sbjct: 498 RDKRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSVDNRRQLNDA 557 Query: 441 KAFFFNRVNK--IYGPKEASEVEGQNYKGAIGF 471 R +K ++G E + + + + GF Sbjct: 558 MGRVAQRNSKTDLFGMVENAMRDLASGQTPAGF 590 >gi|171320148|ref|ZP_02909212.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] gi|171094623|gb|EDT39673.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] Length = 615 Score = 132 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 33/268 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------SITGSSSGPSK 228 ++ LL++ + ++ I ++ LKQ+G +T +S + Sbjct: 353 PDLIALLDVK-PRLIEIEARIIQIDEGALKQLGVDWRAHNSHIDLQTGTGLTSQNSYANG 411 Query: 229 SFAADFGG---------KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTL 277 S FG + S+ VL ++ALE + RT A P + Sbjct: 412 SLNPTFGSITLPGNDSVGLPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASPKV 471 Query: 278 TAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQ 333 T + A + Q + +S S++T GV L P V+ G +I L ++ Sbjct: 472 TTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVEEGGRTQIKLDVR 528 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 V + ++P + +T + G +++AG D + GIP+LSK+P+ Sbjct: 529 I-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGIPVLSKLPL 587 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKP 421 +GALFR++ +E TP +++P Sbjct: 588 VGALFRSTDRQDGHSERLFLVTPRVIEP 615 >gi|62287139|sp|Q9ZHF3|PILQ_NEIME RecName: Full=Type IV pilus biogenesis and competence protein pilQ; Flags: Precursor gi|4027986|gb|AAC96097.1| secretin precursor [Neisseria meningitidis H44/76] Length = 766 Score = 132 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 21/232 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K+++ L++ QV ++ I E + +G + TG +++ A +G Sbjct: 510 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 568 Query: 242 GGD----------------FSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQS 284 GGD G D + L A E + +TLA P + + + Sbjct: 569 GGDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKPKTLANPRVLTQNRKE 628 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + S S G +S T + L TP + G+I + ++ P Sbjct: 629 AKIESGYEIPFTVTSRSGGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPRQC 688 Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 + + + +T + +GGT+++ G+ ++D +PLL+ P+ Sbjct: 689 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLATSPL 740 >gi|325927686|ref|ZP_08188914.1| HrcC protein [Xanthomonas perforans 91-118] gi|325541887|gb|EGD13401.1| HrcC protein [Xanthomonas perforans 91-118] Length = 607 Score = 132 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + TI E+R ++ +G TG G F G ++G V Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVG 428 Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G L + + ALE + ++ P + + A Q + S Sbjct: 429 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486 Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + GV L P+V G++ L ++ E + +P + T Sbjct: 487 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQ 545 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + IP LSKIP++G LF++ + + + TP +V Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAIPGLSKIPLVGNLFKHRQKSGTRMQRLFLLTPHVV 605 Query: 420 KP 421 P Sbjct: 606 SP 607 >gi|218660088|ref|ZP_03516018.1| pilus assembly secretion protein [Rhizobium etli IE4771] Length = 157 Score = 132 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 83/160 (51%), Positives = 108/160 (67%), Gaps = 4/160 (2%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S G K + ++ T L+ALE+A +RTLAEPTLTAISGQ+A+F SGGQ LY T + Sbjct: 2 SGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPTLTAISGQAATFNSGGQQLYST-T 60 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + G +V +YG+ L F P VLS GRI L I+T VSEPV G +Y+ R A+T+ Sbjct: 61 DNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNA---TYQRRSAETS 117 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR Sbjct: 118 VELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFR 157 >gi|291280567|ref|YP_003497401.1| hypothetical protein DEFDS_P017 [Deferribacter desulfuricans SSM1] gi|290755269|dbj|BAI81645.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 531 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 104/270 (38%), Gaps = 31/270 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------TGSSSGPSKSFAADFG 235 L +V L V + EV D K+ G + G+ G +F + Sbjct: 260 DNYFKKLKERLSKEVFLDVKVLEVTYDSNKEQGIDWNALALGKYNGNKLGIRTNFVSGSP 319 Query: 236 GKFVSEGGDFSVKGVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTS 289 F ++ FS + + + ++ + ++P ++GQ A Sbjct: 320 DVFDTQPPGFSSLSLPVLTVSDADDVIKFIAGFVKGKGKLTVKSQPRQLVLNGQPAVIPV 379 Query: 290 GGQHLYK-------------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 G Y T + + T GVVL F P V I L + + Sbjct: 380 GQIIKYISNISSDSGSDSSLTGGDLSYSVETGTLQTGVVLQFLPKVTDDNNIVLNLGVTI 439 Query: 337 S----EPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + +N +P VR +TV++ SG TIV+ G+L D+ +++ +PL+ Sbjct: 440 NRLDKMDEKSLNGIILQLPQTSVRAVSSTVKMKSGQTIVIGGILSDNTNEIENKVPLVGD 499 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420 IPILG LF+ + + +TE+ + T +V+ Sbjct: 500 IPILGNLFKYKKKEKTKTEMIVIITAHVVE 529 >gi|282890886|ref|ZP_06299403.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499240|gb|EFB41542.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus] Length = 956 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 60/326 (18%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---------------------------------- 219 QV +++ I ++ D Q G Sbjct: 624 RQVFIEMLILDISLDDSLQYGVNWGTRFGGGNVAGSQAFLSDASTLPAALDTTGIVNNRG 683 Query: 220 --TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 TG + P+ S A G + G G L S ++ A+ T + P + Sbjct: 684 ITTGQTLLPNASGLARLPGYNLGVLGQNVSLGNLTFDSIGALVKAIHDKTNTNIIMNPKI 743 Query: 278 TAISGQSASFTSGGQHLYKTVS-SSTGATSV----TTHDYGVVLHFTPTVLSPGRIGLRI 332 +A G ++T S S+ G T + + G TP + + + L I Sbjct: 744 LTEDNVTAEIFVGFNTPFQTQSISNIGGTPIANNFEFRNVGTTFKVTPFLGNNDIVTLEI 803 Query: 333 QTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + EVS + + P+ R+ + T V +P +VL+G+++D+ + + +P Sbjct: 804 REEVSSVASTTTSDVLNTALPGPTTRLSRTTTRVHVPDKYFLVLSGMMQDEDTRRRVNVP 863 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRP-DDHYSVEDDAKA-- 442 L +PI+GA F + + + I I P ++ ++++++ D + ++++K Sbjct: 864 CLGGLPIIGAAFSDKTVSDAKRNIMIFIRPEIIDTEEEVQNVTKHQQDVFRYKNESKRSW 923 Query: 443 ---------FFFNRVNKIYGPKEASE 459 FF + + Y EA E Sbjct: 924 KYEVDEALDFFNIKSTEKYEACEACE 949 >gi|78045991|ref|YP_362166.1| HrcC protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|462304|sp|P80151|HRPA1_XANEU RecName: Full=Hypersensitivity response secretion protein hrpA1; Flags: Precursor gi|398109|gb|AAA27603.1| hrpA1 [Xanthomonas campestris] gi|984886|gb|AAB08464.1| HrpA1 [Xanthomonas euvesicatoria] gi|78034421|emb|CAJ22066.1| HrcC protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 607 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 21/242 (8%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + TI E+R ++ +G TG G F G ++G V Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGA-ATDGATTPVG 428 Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G L + + ALE + ++ P + + A Q + S Sbjct: 429 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486 Query: 303 GATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 + + GV L P+V G++ L ++ E + +P + T Sbjct: 487 ASADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGSNTVDGIPVITSSEITTQ 545 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + G ++++AG D + IP LSKIP++G LF++ + + + TP +V Sbjct: 546 AFVNEGQSLLIAGYAYDADETDLNAIPGLSKIPLVGNLFKHRQKSGTRMQRLFLLTPHVV 605 Query: 420 KP 421 P Sbjct: 606 SP 607 >gi|166714017|ref|ZP_02245224.1| HrcC [Xanthomonas oryzae pv. oryzicola BLS256] gi|61219456|gb|AAX40633.1| HrcC [Xanthomonas oryzae pv. oryzicola] Length = 607 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + TI E+R ++ +G TG G F G ++G V Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA-ATDGATTPVG 428 Query: 249 GVLDRFSFET------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G L + + ALE + ++ P + + A Q + S Sbjct: 429 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRV--SGY 486 Query: 303 GATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTV 360 + + GV L P+V+ +R+ + + +G N D +P + T Sbjct: 487 ASADLYNLSAGVSLRVLPSVVPGSPNSQMRLDVRIEDGQLGSNTVDGIPVITSSEIKTQA 546 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + +P LSKIP+LG LF++ + N + TP +V Sbjct: 547 FVNEGQSLLIAGYAYDADETNLNAVPGLSKIPLLGNLFKHRQKNGSRMQRLFLLTPHVVS 606 Query: 421 P 421 P Sbjct: 607 P 607 >gi|251789515|ref|YP_003004236.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya zeae Ech1591] gi|247538136|gb|ACT06757.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya zeae Ech1591] Length = 691 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 101/295 (34%), Gaps = 20/295 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ +++ ++ V + I +V R L ++ + + + FVS Sbjct: 312 QQLIDKIDVP-QNLVNIDAIILDVDRTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS- 369 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 D F + ALE +A P++ + Q A ++ Sbjct: 370 ----------DFKRFSADIQALEGEGTASIVANPSVLTLENQPAVIDFSRTAFI--TATG 417 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 +V G L TP V+ G I L I E V G + T Sbjct: 418 ERVANVQPVTAGTSLQVTPRVVGHGGSSSIQLVIDIE-DGQVETNTEGTASGVKRGTVST 476 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + +VL G ++ + +PLL IP +G LF + + E TP L Sbjct: 477 QALIGENRALVLGGFHVEESGDRDKRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHL 536 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK--IYGPKEASEVEGQNYKGAIGF 471 + D+ +DA R +K ++G E + + + + GF Sbjct: 537 IGDQNDPTRFVSADNRRQLNDAMGRVAQRNSKTDLFGTVENALRDLASGQTPAGF 591 >gi|330975856|gb|EGH75922.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 702 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 105/291 (36%), Gaps = 23/291 (7%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L+++ + + I ++ R+ L ++ + + S GG Sbjct: 306 KAMYEKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVN---------GGA 355 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LHALE + + P++ + Q A Sbjct: 356 NMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY--L 413 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S ++ G L TP L ++ L + E + I PS R Sbjct: 414 TATSERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKG 473 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + +PLL IP +G LF++ + E Sbjct: 474 NVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGKLLFQSRSRELSQRERLFI 533 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 TP L+ D P + + +++ +I ++ E+ + Sbjct: 534 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 577 >gi|51103131|gb|AAT96274.1| hrcC [Pseudomonas viridiflava] Length = 753 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 92/272 (33%), Gaps = 24/272 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + I ++ R L + + S S +FG ++ G DR Sbjct: 382 VEIDAVILDIDRSQLSSLESRWSARAGS--------VNFGSSLLTGGSSTLFINDFDR-- 431 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + ALE +A P++ + Q A T +V G Sbjct: 432 FFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERV--ANVQPVTAGTS 489 Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P ++ R L + E + D P + T + ++V+ G Sbjct: 490 LRVIPRTIAGEQPNRFQLIVDIE-DGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGG 548 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 D+ + ++ +P+L +P++GALF + R E TP LV D P Sbjct: 549 FHVDESGERQDKVPILGSLPVIGALFTSKRHEVSRRERLFILTPRLV-----GDQLDPSR 603 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 + + E+ + +R + G + + Sbjct: 604 YIARENRPQ---LDRALALSGSPSTRQQKRDR 632 >gi|309586|gb|AAA25456.1| outer membrane protein [Neisseria gonorrhoeae] Length = 711 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 96/244 (39%), Gaps = 21/244 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K+++ L++ QV ++ I E + +G + TG +++ A +G Sbjct: 455 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 513 Query: 242 GGD----------------FSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQS 284 GGD G D + L A E + +TLA P + + + Sbjct: 514 GGDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKTKTLANPRVLTQNRKE 573 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + + S G S T + L T + G+I + ++ P Sbjct: 574 AKIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLTVTANITPDGQIIMTVKINKDSPRQC 633 Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + + +T + +GGT+++ G+ +++ +PLL+ P+ ++S Sbjct: 634 ASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLATSPLSATSLKHS 693 Query: 402 RFNR 405 NR Sbjct: 694 GKNR 697 >gi|226227920|ref|YP_002762026.1| hypothetical protein GAU_2514 [Gemmatimonas aurantiaca T-27] gi|226091111|dbj|BAH39556.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 735 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 90/224 (40%), Gaps = 28/224 (12%) Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + + A+ + L R+ L+AL+ ++ +EP++T ++ + Sbjct: 505 GGNAIAGIANANNAIKPNALNLIYSTALGRYQLTAFLNALQTSSLADVQSEPSITILNNR 564 Query: 284 SASFTSGGQHLYKTVSSSTGA---------------------------TSVTTHDYGVVL 316 SA G + + + +S G +V+ + G+ L Sbjct: 565 SAEIFVGQEIPIRVIDASAGGQGGGGGGGGGGGGGAAGQPNAAAFFPRATVSKEEAGIKL 624 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 TP + + + L I+ E S I + + ++A++ V + G V+ GL Sbjct: 625 SVTPQITNNKMVMLNIKAENSSAEIASTDVGV-IFNRQRAESQVLVADGEAAVIGGLTVT 683 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + + GIP+L +P +G +F + N + ++ I TP ++ Sbjct: 684 ETTRFRSGIPVLMNLPFVGRIFSQNTKNETKRDLLILVTPHILD 727 >gi|51103173|gb|AAT96315.1| HrcC [Pseudomonas viridiflava] Length = 753 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 92/272 (33%), Gaps = 24/272 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + I ++ R L + + S S +FG ++ G DR Sbjct: 382 VEIDAVILDIDRSQLSSLESRWSARAGS--------VNFGSSLLTGGSSTLFINDFDR-- 431 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + ALE +A P++ + Q A T +V G Sbjct: 432 FFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERV--ANVQPVTAGTS 489 Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P ++ R L + E + D P + T + ++V+ G Sbjct: 490 LRVIPRTIAGEQPNRFQLIVDIE-DGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGG 548 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 D+ + ++ +P+L +P++GALF + R E TP LV D P Sbjct: 549 FHVDESGERQDKVPILGSLPVIGALFTSKRHEVSRRERLFILTPRLV-----GDQLDPSR 603 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 + + E+ + +R + G + + Sbjct: 604 YIARENRPQ---LDRALALSGSPSTRQQKRDR 632 >gi|289623690|ref|ZP_06456644.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647636|ref|ZP_06478979.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. aesculi str. 2250] gi|298485943|ref|ZP_07004018.1| type III secretion system outer membrane pore protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|37931591|gb|AAP72286.1| HrcC [Pseudomonas savastanoi] gi|298159529|gb|EFI00575.1| type III secretion system outer membrane pore protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330871294|gb|EGH06003.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 699 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 104/287 (36%), Gaps = 23/287 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+++ + + I ++ R+ L ++ + + S G GG + + Sbjct: 307 EKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + + F LHALE + + P++ + Q A ++S Sbjct: 357 AGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI--TATS 414 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 ++ G L P L ++ L + E + I PS R T Sbjct: 415 ERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVST 474 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417 + G++V+ G + IPLL IP +G LF++ + E TP Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 L+ D P + + +++ +I ++ E+ + Sbjct: 535 LI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 574 >gi|257487241|ref|ZP_05641282.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. tabaci ATCC 11528] gi|238577781|gb|ACR46692.1| HrcC [Pseudomonas syringae pv. tabaci] gi|331009145|gb|EGH89201.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 699 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 104/287 (36%), Gaps = 23/287 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+++ + + I ++ R+ L ++ + + S G GG + + Sbjct: 307 EKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + + F LHALE + + P++ + Q A ++S Sbjct: 357 AGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI--TATS 414 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 ++ G L P L ++ L + E + I PS R T Sbjct: 415 ERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVST 474 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417 + G++V+ G + IPLL IP +G LF++ + E TP Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 L+ D P + + +++ +I ++ E+ + Sbjct: 535 LI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 574 >gi|212711709|ref|ZP_03319837.1| hypothetical protein PROVALCAL_02784 [Providencia alcalifaciens DSM 30120] gi|212685811|gb|EEB45339.1| hypothetical protein PROVALCAL_02784 [Providencia alcalifaciens DSM 30120] Length = 567 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 101/297 (34%), Gaps = 24/297 (8%) Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 +V G S A S + + + ++Q + ++ L+ QV L + I + Sbjct: 267 IVKRGNASNSAFSLVAHPDSNSLIVKGSQSQI--RYVRDLVKNLDNR-RRQVELSLWIID 323 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 + R L +G + +G F+ + D F + AL Sbjct: 324 ITRSELDNLGVNWEVGSFKAGGGSI--------------SFNRSTLPDSSKFLVQIDALS 369 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + + ++ P L A F + K ++ YG ++ P + Sbjct: 370 KNGNSQIVSRPVLLTQENVPALFDNNTSFYAKL--QGERIATLEQVTYGTMISVMPRISG 427 Query: 325 PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 + + + E N +PS +T + ++++ G +D Sbjct: 428 GQSVEMEVNIEDGAESRDSSGKTSNVEGLPSVNRTSINTVARIAKDSSLLIGGYTRDQYI 487 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436 + IPLL IP +G LFR+S N+++ P L+ + D + D + Sbjct: 488 DNESKIPLLGDIPWIGGLFRHSSTNQQKMVRLFLIQPRLLDENEVWDGRQFSDKTRI 544 >gi|1772618|gb|AAC31975.1| HrcC [Erwinia chrysanthemi] Length = 691 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 101/295 (34%), Gaps = 20/295 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ +++ ++ V + I +V R L ++ + + + FVS Sbjct: 312 QQLIDKIDVP-QNLVNIDAIILDVDRTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS- 369 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 D F + ALE +A P++ + Q A ++ Sbjct: 370 ----------DFKRFSADIQALEGEGTASIVANPSVLTLENQPAVIDFSRTAFI--TATG 417 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 +V G L TP V+ G I L I E V G + T Sbjct: 418 ERVANVQPVTAGTSLQVTPRVVGHGSTSSIQLVIDIE-DGQVETNTEGTASGVKRGTVST 476 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + +VL G ++ + +PLL IP +G LF + + E TP L Sbjct: 477 QALIGENRALVLGGFHVEESGDRDKRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHL 536 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK--IYGPKEASEVEGQNYKGAIGF 471 + D+ +DA R +K ++G E + + + + GF Sbjct: 537 IGDQNDPTRFVSADNRRQLNDAMGRVAQRNSKTDLFGTVENALRDLASGQTPAGF 591 >gi|254254350|ref|ZP_04947667.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] gi|124898995|gb|EAY70838.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] Length = 702 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 65/331 (19%), Positives = 116/331 (35%), Gaps = 48/331 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222 + ++N L+ V + VTI ++ D L +G T Sbjct: 325 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLSGNTQY 383 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274 + + G + G F G+ S L +AL + + ++ Sbjct: 384 NGSGNPPLTFGIGTSETGQTGAFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 443 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLSP-------- 325 P + A+ A + Q + + SVTT G + TP ++ Sbjct: 444 PKVLALDNTEAILENLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDDAARNAAAA 500 Query: 326 ----GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + + I + V G ++P + R T + G ++++AG D+++ Sbjct: 501 AGGPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLN 560 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDD 439 K G+P LS IP++G LF+ + + E F TP +V +M D S + D Sbjct: 561 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASMYAPDGSPVNPGADAPAD 620 Query: 440 AKAFFFNR--VNKIYGPKEASEVEGQNYKGA 468 A R N I P + G ++ A Sbjct: 621 PNALSMYRPPDNDIAVPLTPKPLPGTKFRAA 651 >gi|37522007|ref|NP_925384.1| hypothetical protein glr2438 [Gloeobacter violaceus PCC 7421] gi|35213006|dbj|BAC90379.1| glr2438 [Gloeobacter violaceus PCC 7421] Length = 493 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 74/366 (20%), Positives = 134/366 (36%), Gaps = 61/366 (16%) Query: 90 FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149 G VG N+ D A LR + + V+ ++++V G Sbjct: 162 LGAQVGSTNLGSTQPGAATT-------NPDPAATSGPLR---GELFVTVDARTNSLVAVG 211 Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 RA+++++ L+Q Q QV + V + +V + Sbjct: 212 SP-------RALQIAQVQLAQLDVRQ------------------RQVMIDVKLVDVNLNN 246 Query: 210 LKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGG--DFSVKGVLDRFSFETVLHALE-- 264 + +GF+ + G+ + AAD G + + G L + + A+ Sbjct: 247 VSDLGFRLGGSAGNFQLGTVGGAADLGASYPAAVGLTGGGPGNTLIFNTLGALASAMALR 306 Query: 265 -----RATAIRTLAEPTLTAISG------QSASFTSGGQHLY---KTVSSSTGATSVTTH 310 + + R LA P L SG +A + T TG ++ T Sbjct: 307 LDTAIQEGSARVLASPQLLVASGAGFSKPTAARVEITDDVVVGATITTDRETGQSTTTIK 366 Query: 311 --DYGVVLHFTP-TVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKA--DTTVELP 363 GV L V G + + ++ +VS + AG++ + R+ + L Sbjct: 367 VDKVGVSLEIAVYQVDDNGFVDVSLKPQVSSINDIQRDAAGNLVTLLTRRNLDIQRLRLR 426 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G T V+ G++++ +QL + +PLL +P+LGALFR E E+ + TP ++K Sbjct: 427 DGETFVIGGVIREIDRQLVQKMPLLGDLPVLGALFRFQSNQHERREVALMVTPHILKESV 486 Query: 424 MRDLSR 429 Sbjct: 487 HEAAPL 492 >gi|312958833|ref|ZP_07773352.1| type III secretion system rscC [Pseudomonas fluorescens WH6] gi|311286603|gb|EFQ65165.1| type III secretion system rscC [Pseudomonas fluorescens WH6] Length = 713 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 89/258 (34%), Gaps = 18/258 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ L++A + V + I ++ R L + G + S F G Sbjct: 320 RELISQLDVARKL-VEIDAIILDIERTQLHEFGIKWGFQNSR----------FRGGVNMA 368 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + R F + ALE ++ P++ + Q A +++ Sbjct: 369 PGTSSQLSIEHRDRFYADVRALESRGLATMVSNPSVLTLENQPAVIDFNRTQY---LTAG 425 Query: 302 TGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 ++ G P V++ +I L + E P R K T Sbjct: 426 RENATILPITVGTSFQVVPRVITSRGGHQIHLAVDIEDGNFDESNPDRLGPDVRRGKVST 485 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPF 417 + ++V+ G + + +PLL IP+LG ALF ++ E TP Sbjct: 486 QAVMAEKRSLVVGGFHVTESSDKQRKVPLLGDIPLLGKALFSSTERQNNRRERLFILTPR 545 Query: 418 LVKPVAMRDLSRPDDHYS 435 ++ + P D Sbjct: 546 VIGDQSDPSRYLPADDQV 563 >gi|167906931|ref|ZP_02494136.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei NCTC 13177] Length = 588 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 100/263 (38%), Gaps = 29/263 (11%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237 ++ L+I + ++ I E+ D+L++IG S G + D+ G Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386 Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281 + G+ V S ++AL+ + ++ A P + + Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVNALQSTSKVKIDASPLVATLD 446 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338 A + + K S + + + GV L P ++ G RI + + Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|312597809|gb|ADQ89924.1| RscC [Pseudomonas fluorescens] Length = 716 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 55/280 (19%), Positives = 90/280 (32%), Gaps = 17/280 (6%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + I ++ R L ++ ++ GG + G S + D Sbjct: 336 VEIDAIILDIDRTQLAELASNWNVESGDL---------IGGASMIRPGASSTVFIQDYGD 386 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L ALE +A P++ + Q A + +V G Sbjct: 387 FSAQLRALEGRGLASVVANPSVLTLENQPAVIDFSRTEYISAIGERV--ATVEPITAGTS 444 Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P + G +I + ++ E PS R T + ++V+ G Sbjct: 445 LQVVPHAIETGGRNQIQMSLEIEDGRIEPSEVGQQTPSVRRGVVSTQAVMGESRSLVVGG 504 Query: 373 LLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 ++ E +P L +IP++G LF ++ E TP L+ Sbjct: 505 FHTEETGDNLERVPWLGRIPLIGPLLFSSTTRETSRRERVFILTPRLIGDQVDPARYISA 564 Query: 432 DHYSVEDDAKAFFFNRVN--KIYGPKEASEVEGQNYKGAI 469 D A A R N + G E S+V Q G I Sbjct: 565 LDREQVDSAMARLEERRNGTRPVGRIEVSDVLAQLADGNI 604 >gi|330895850|gb|EGH28136.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. japonica str. M301072PT] Length = 640 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 105/291 (36%), Gaps = 23/291 (7%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L+++ + + I ++ R+ L ++ + + S GG Sbjct: 244 KAMYEKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVN---------GGA 293 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LHALE + + P++ + Q A Sbjct: 294 NMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEY--L 351 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S ++ G L TP L ++ L + E + I PS R Sbjct: 352 TATSERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKG 411 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + +PLL IP +G LF++ + E Sbjct: 412 NVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGKLLFQSRSRELSQRERLFI 471 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 TP L+ D P + + +++ +I ++ E+ + Sbjct: 472 LTPRLI-----GDQVNPARYVQNGNPRDVD--DKMKRIKERRDGGELPTRG 515 >gi|302129976|ref|ZP_07255966.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 699 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 104/291 (35%), Gaps = 23/291 (7%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L++ + + I ++ R+ L ++ + + S G GG Sbjct: 303 KAMYQKLVKELDVPRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGA 352 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LHALE + + P++ + Q A Sbjct: 353 NLFDAGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--L 410 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S A + G L P L ++ + + E + + PS R Sbjct: 411 TATSERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRG 470 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + IPLL IP +G LF++ + E Sbjct: 471 NVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFI 530 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 TP L+ D P + + +++ KI ++ E+ + Sbjct: 531 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKKIKERRDGGELPTRG 574 >gi|162533078|ref|NP_791216.2| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato str. DC3000] gi|213968270|ref|ZP_03396414.1| outer membrane type III secretion hrcc [Pseudomonas syringae pv. tomato T1] gi|301383405|ref|ZP_07231823.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato Max13] gi|302061709|ref|ZP_07253250.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato K40] gi|119388972|gb|AAO54911.2| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tomato str. DC3000] gi|213926908|gb|EEB60459.1| outer membrane type III secretion hrcc [Pseudomonas syringae pv. tomato T1] Length = 699 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 104/291 (35%), Gaps = 23/291 (7%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L++ + + I ++ R+ L ++ + + S G GG Sbjct: 303 KAMYQKLVKELDVPRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGA 352 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LHALE + + P++ + Q A Sbjct: 353 NLFDAGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--L 410 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S A + G L P L ++ + + E + + PS R Sbjct: 411 TATSERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRG 470 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + IPLL IP +G LF++ + E Sbjct: 471 NVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFI 530 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 TP L+ D P + + +++ KI ++ E+ + Sbjct: 531 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKKIKERRDGGELPTRG 574 >gi|170289478|ref|YP_001739716.1| type II and III secretion system protein [Thermotoga sp. RQ2] gi|170176981|gb|ACB10033.1| type II and III secretion system protein [Thermotoga sp. RQ2] Length = 387 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 101/237 (42%), Gaps = 7/237 (2%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K + ++I QV + V + EV +D ++G S G + F ++ Sbjct: 154 EKDLEKIDIPIP-QVKISVIVTEVSKDYSNELGLN--SLDYSFGSGQEFNENWSATLGLV 210 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G +V+ + L LE + A+P + SG+ AS G + + + + Sbjct: 211 TGLINVQTDVFG-QILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQVV-LLQAE 268 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + + + D GV + P V+ + L + +VS + + + TT+ Sbjct: 269 GAVSRIESIDVGVSIDIQPRVMDKEELELTLSPKVSHFAG--EKLGTFAVKQNELSTTLF 326 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 L +G T+V++G +D Q G+P+L+KIP++ LF + + E++I + Sbjct: 327 LKNGQTVVISGATIEDNAQTNSGVPILNKIPLIRYLFGGTMKKDSQKELYIFIKAEI 383 >gi|330872930|gb|EGH07079.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 699 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 104/291 (35%), Gaps = 23/291 (7%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L++ + + I ++ R+ L ++ + + S G GG Sbjct: 303 KAMYQKLVKELDVPRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGA 352 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LHALE + + P++ + Q A Sbjct: 353 NLFDAGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--L 410 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S A + G L P L ++ + + E + + PS R Sbjct: 411 TATSERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRG 470 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + IPLL IP +G LF++ + E Sbjct: 471 NVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFI 530 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 TP L+ D P + + +++ KI ++ E+ + Sbjct: 531 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKKIKERRDGGELPTRG 574 >gi|297622120|ref|YP_003710257.1| putative general secretion pathway protein D [Waddlia chondrophila WSU 86-1044] gi|297377421|gb|ADI39251.1| putative general secretion pathway protein D [Waddlia chondrophila WSU 86-1044] Length = 865 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 101/271 (37%), Gaps = 34/271 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--- 238 K+++ L++ + V ++V + E G GS++ + + G Sbjct: 530 KEIIAKLDVP-KKMVQIEVLLFERILQRDISYGLNLLKIGSAASQKHRTSTVWAGGLDQC 588 Query: 239 --VSEGGDFSV--KGVLDRF-----------SFETVLHALERATAIRTLAEPTLTAISGQ 283 +++ + +GV+D F +F+ L + A P++ AI+ Sbjct: 589 EAIADASTIATCGRGVIDFFISRKKTDSGIPAFDLAYKFLMSQDNVYLTASPSVVAINQT 648 Query: 284 SASFTSGGQHLYKTVSSSTGATSV------TTHDYGVVLHFTPTVL---------SPGRI 328 A + + ++ T + +V T YG+ + TP + I Sbjct: 649 EAVISIQDERSILVGTNITDSAAVPAQNAFTRAQYGITIRVTPIIHYSEDTDFGDPENYI 708 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 L + P R+ V +P G +++ GL + + + IP L Sbjct: 709 TLNSEITFDTIPPSQQNSSQPQVNRRQIINQVNIPDGQAVIIGGLQRKQGSDMCDKIPFL 768 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++P LG LF ++ EETE+ I TP ++ Sbjct: 769 GELPGLGKLFSTTQLTDEETELVIFMTPKII 799 >gi|303252187|ref|ZP_07338355.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648970|gb|EFL79158.1| Flp pilus assembly protein, secretin [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 190 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 5/168 (2%) Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 +SG++A GG+ + G SV ++G+ L V RI L + VS Sbjct: 1 MLSGETADILVGGEVPF-VQRDKDGELSVLYKEFGIKLAVGAKVQKSDRIRLVLSQSVST 59 Query: 339 PVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + +P + R++ +T E+ +G + +++GLL + + +P+L IPILGA Sbjct: 60 IAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKVPVLGDIPILGA 119 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 FRN+ +RE E+ + AT LVKPV + P + + FF Sbjct: 120 FFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFF 165 >gi|254491741|ref|ZP_05104920.1| Bacterial type II and III secretion system protein [Methylophaga thiooxidans DMS010] gi|224463219|gb|EEF79489.1| Bacterial type II and III secretion system protein [Methylophaga thiooxydans DMS010] Length = 743 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 60/297 (20%), Positives = 113/297 (38%), Gaps = 31/297 (10%) Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 L ++ S+ +++++ ++I QV L++ I V F + S Sbjct: 289 HNMLVVRSDDKSVLSNIRQLIHSMDIPVP-QVMLEMRILSVILGEDFNSIFNFELQ-PSG 346 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G A G + G F + + R L LE +R L+ P + A + + Sbjct: 347 GNQSQQPALLGNNALLNSGTFVYEFLNSR--LRANLEFLEENNRVRVLSNPMIVASNHRQ 404 Query: 285 ASFTSG-------GQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGL 330 A G G + + + V D G+ L TP + + L Sbjct: 405 AELFIGAETLLTDGFEFFPAIIDNGVVIQPSYVQAIVNREDIGITLRITPRINGDETVEL 464 Query: 331 RIQTEVSEPVIGVNAGDMP------------SYRVRKADTTVELPSGGTIVLAGLLKDDI 378 I+ E S G + + + + TV G T+ + GL++ Sbjct: 465 LIEQENSTVNPGGGSVPITDGNGTVQNLPVDTVDTARLTGTVMAKDGLTVAVGGLIRTSK 524 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434 + + +P+LS+IP+LG +FR++ + +ETE + TP ++ P L + D+ + Sbjct: 525 NKNERKVPVLSEIPVLGRIFRSTTESEQETETVLLITPRVMNVPEESEKLRQTDNRF 581 >gi|330957480|gb|EGH57740.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. maculicola str. ES4326] Length = 703 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 104/291 (35%), Gaps = 23/291 (7%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L+++ + + I ++ R+ L ++ + + S G GG Sbjct: 307 KAMYEKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGV 356 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LH LE + + P++ + Q A Sbjct: 357 NMFDAGTTSTMFIQNAGKFTAELHTLEGNGSASVIGNPSILTLENQPAVIDFSRTEY--L 414 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S ++ G L TP L ++ L + E + I PS R Sbjct: 415 TATSERVANIEPITAGTSLQVTPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKG 474 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + IPLL IP +G LF++ E Sbjct: 475 NVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSNRERLFI 534 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 TP L+ D P + + +++ +I ++ E+ + Sbjct: 535 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 578 >gi|281413054|ref|YP_003347133.1| type II and III secretion system protein [Thermotoga naphthophila RKU-10] gi|281374157|gb|ADA67719.1| type II and III secretion system protein [Thermotoga naphthophila RKU-10] Length = 387 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 6/225 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV + V + EV +D ++G S G + F ++ G +V+ + Sbjct: 165 PQVKISVIVTEVSKDYSNELGLN--SLDYSFGSGQEFNENWSATLGLVTGLINVQTDVFG 222 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 L LE + A+P + SG+ AS G + + + + + + + D G Sbjct: 223 -QILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQVV-LLQAEGAVSRIESIDVG 280 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V + P V+ + L + +VS + + + TT+ L +G T+V++G Sbjct: 281 VSIDIQPRVMDKEELELTLSPKVSHFAG--EKLGTFAVKQNELSTTLFLKNGQTVVISGA 338 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +D Q G+P+L+KIP++ LF + + E++I + Sbjct: 339 TIEDNAQTNSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383 >gi|167587171|ref|ZP_02379559.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia ubonensis Bu] Length = 341 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 108/268 (40%), Gaps = 33/268 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------SITGSSSGPSK 228 ++ LL++ + ++ + E+ LKQ+G +T +S + Sbjct: 79 PDLIALLDVK-PRLIEIEARMIEIDEGALKQLGIDWRAHNSHFDLQTGTGLTSQNSYANG 137 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVL-----------HALERATAIRTLAEPTL 277 S FG +S SV S VL +ALE A RT A P + Sbjct: 138 SLNPTFGSISLSGNDSVSVPASPLGLSLTAVLGDAGRYLLARINALESANQARTDASPKV 197 Query: 278 TAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQ 333 T + A + Q + +S S++T GV L P V+ G +I L ++ Sbjct: 198 TTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVEEGGRTQIKLDVR 254 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 V + ++P + +T + G +++AG D + G+P+LSK+P+ Sbjct: 255 I-VDGELSRQTVDNIPVIVSTEINTQAFIEQGQALLIAGYKMDARSSTQSGVPVLSKLPL 313 Query: 394 LGALFRNSRFNREETEIFIAATPFLVKP 421 +G LFR++ +E TP +++P Sbjct: 314 IGGLFRSTDKEDSHSERLFLVTPRVIEP 341 >gi|330812422|ref|YP_004356884.1| type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380530|gb|AEA71880.1| putative type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 716 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 55/280 (19%), Positives = 90/280 (32%), Gaps = 17/280 (6%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + I ++ R L ++ ++ GG + G S + D Sbjct: 336 VEIDAIILDIDRTQLAELASNWNVESGDL---------IGGASMIRPGASSTVFIQDYGD 386 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L ALE +A P++ + Q A + +V G Sbjct: 387 FSAQLRALEGRGLASVVANPSVLTLENQPAVIDFSRTEYISAIGERV--ATVEPITAGTS 444 Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P + G +I + ++ E PS R T + ++V+ G Sbjct: 445 LQVVPHAIETGGRNQIQMSLEIEDGRIEPSEVGQQTPSVRRGVVSTQAVMGESRSLVVGG 504 Query: 373 LLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431 ++ E +P L +IP++G LF ++ E TP L+ Sbjct: 505 FHTEETGDNLERVPWLGRIPLIGPLLFSSTTRETSRRERVFILTPRLIGDQVDPARYISA 564 Query: 432 DHYSVEDDAKAFFFNRVN--KIYGPKEASEVEGQNYKGAI 469 D A A R N + G E S+V Q G I Sbjct: 565 LDREQVDSAMARLEERRNGTRPVGRIEVSDVLAQLADGNI 604 >gi|217425412|ref|ZP_03456906.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] gi|217391663|gb|EEC31691.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] Length = 588 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 58/304 (19%), Positives = 108/304 (35%), Gaps = 35/304 (11%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV------MNLLNIAGEDQVTLKVTI 202 G RT + S EL + ++ + L+I + ++ I Sbjct: 287 GAPRTEEASAERDELPIIQPDPMTNSVLIRDLPDRLAQYAPLIQQLDIR-PRLIEIQAHI 345 Query: 203 AEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-------FVSEGGDFSVKGVL 251 E+ D+L++IG S G + D+ G + G+ V Sbjct: 346 MEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQINPFFGTTTLAGNAVVNAAP 405 Query: 252 DRFS-----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 S + AL+ + ++ A P + + A + + K S Sbjct: 406 AGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKV--S 463 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 + + + GV L P ++ G RI + + + G ++P + + Sbjct: 464 GYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DGQLTGDQVDNLPVITSSEIN 522 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + G ++++AG D G+P LSKIP+LGALFR ++ E +P Sbjct: 523 TQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPR 582 Query: 418 LVKP 421 ++ P Sbjct: 583 IIDP 586 >gi|254264333|ref|ZP_04955198.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] gi|254215335|gb|EET04720.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] Length = 588 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237 ++ L+I + ++ I E+ D+L++IG S G + D+ G Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386 Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281 + G+ V S + AL+ + ++ A P + + Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARHLMARVSALQSTSKVKIDASPLVATLD 446 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338 A + + K S + + + GV L P ++ G RI + + Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|307131207|ref|YP_003883223.1| type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) [Dickeya dadantii 3937] gi|306528736|gb|ADM98666.1| Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) [Dickeya dadantii 3937] Length = 689 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 91/272 (33%), Gaps = 18/272 (6%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++++ +++ ++ V + I +V R L ++ + + + FVS Sbjct: 310 QQLIDKIDVP-QNLVNIDAIILDVDRTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS- 367 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 D F + ALE +A P++ + Q A ++ Sbjct: 368 ----------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSRTAFI--TATG 415 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 +V G L TP V+ G I L I E V G + T Sbjct: 416 ERVANVQPVTAGTSLQVTPRVVGRGSLSSIQLVIDIE-DGQVETNTEGTASGVKRGTVST 474 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + +VL G ++ + +PLL IP +G LF + + E TP L Sbjct: 475 QALIGENRALVLGGFHVEESGDRDKRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHL 534 Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 + D+ +DA R +K Sbjct: 535 IGDQNDPTRFVSADNRRQLNDAMGRVAQRNSK 566 >gi|126445154|ref|YP_001062980.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 668] gi|126224645|gb|ABN88150.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 668] Length = 588 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237 ++ L+I + ++ I E+ D+L++IG S G + D+ G Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDDDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386 Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281 + G+ V S + AL+ + ++ A P + + Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLD 446 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338 A + + K S + + + GV L P ++ G RI + + Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|14719865|gb|AAK73229.1| SctC [Burkholderia pseudomallei] Length = 588 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237 ++ L+I + ++ I E+ D+L++IG S G + D+ G Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386 Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281 + G+ V S + AL+ + ++ A P + + Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLD 446 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338 A + + K S + + + GV L P ++ G RI + + Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|126456443|ref|YP_001075927.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1106a] gi|134282510|ref|ZP_01769214.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] gi|167742975|ref|ZP_02415749.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 14] gi|167849982|ref|ZP_02475490.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei B7210] gi|167898588|ref|ZP_02485989.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 7894] gi|167915290|ref|ZP_02502381.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 112] gi|167923124|ref|ZP_02510215.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei BCC215] gi|242313713|ref|ZP_04812730.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] gi|254186704|ref|ZP_04893220.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|254194157|ref|ZP_04900589.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei S13] gi|254301616|ref|ZP_04969060.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|126230211|gb|ABN93624.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106a] gi|134246067|gb|EBA46157.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] gi|157811506|gb|EDO88676.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|157934388|gb|EDO90058.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|169650908|gb|EDS83601.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei S13] gi|242136952|gb|EES23355.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] Length = 588 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237 ++ L+I + ++ I E+ D+L++IG S G + D+ G Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386 Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281 + G+ V S + AL+ + ++ A P + + Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLD 446 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338 A + + K S + + + GV L P ++ G RI + + Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|53722417|ref|YP_111402.1| type III secretion system protein [Burkholderia pseudomallei K96243] gi|167820148|ref|ZP_02451828.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 91] gi|52212831|emb|CAH38865.1| putative type III secretion system protein [Burkholderia pseudomallei K96243] Length = 588 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237 ++ L+I + ++ I E+ D+L++IG S G + D+ G Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDDDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386 Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281 + G+ V S + AL+ + ++ A P + + Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLD 446 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338 A + + K S + + + GV L P ++ G RI + + Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|71737444|ref|YP_273539.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557997|gb|AAZ37208.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. phaseolicola 1448A] gi|170523102|gb|ACB20761.1| type III outer-membrane secretion protein HrcC [Pseudomonas syringae pv. glycinea] gi|320322961|gb|EFW79051.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. glycinea str. B076] gi|320329916|gb|EFW85904.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. glycinea str. race 4] gi|330874593|gb|EGH08742.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. glycinea str. race 4] Length = 699 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 105/287 (36%), Gaps = 23/287 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+++ + + I ++ R+ L ++ + + S G GG + + Sbjct: 307 EKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + + F + LHALE + + P++ + Q A ++S Sbjct: 357 AGTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI--TATS 414 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 ++ G L P L ++ L + E + I PS R T Sbjct: 415 ERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVST 474 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417 + G++V+ G + IPLL IP +G LF++ + E TP Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 L+ D P + + +++ +I ++ E+ + Sbjct: 535 LI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 574 >gi|330984958|gb|EGH83061.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. lachrymans str. M301315] Length = 703 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 103/287 (35%), Gaps = 23/287 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+++ + + I ++ R+ L ++ + + S G GG + + Sbjct: 311 EKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNMFD 360 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + + F LH LE + + P++ + Q A ++S Sbjct: 361 AGTTSTMFIQNAGKFTAELHTLEGNGSASVIGNPSILTLENQPAVIDFSRTEY--LTATS 418 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 ++ G L TP L ++ L + E + I PS R T Sbjct: 419 ERVANIEPITAGTSLQVTPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVST 478 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417 + G++V+ G + +PLL IP +G LF++ E TP Sbjct: 479 QAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSNRERLFILTPR 538 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 L+ D P + + +++ +I ++ E+ + Sbjct: 539 LI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 578 >gi|42562008|gb|AAS20450.1| HrcC [Pseudomonas syringae pv. phaseolicola] Length = 699 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 105/287 (36%), Gaps = 23/287 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+++ + + I ++ R+ L ++ + + S G GG + + Sbjct: 307 EKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGVNLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + + F + LHALE + + P++ + Q A ++S Sbjct: 357 AGTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI--TATS 414 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 ++ G L P L ++ L + E + I PS R T Sbjct: 415 ERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGKIDISDINDTQPSVRKGNVST 474 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417 + G++V+ G + IPLL IP +G LF++ + E TP Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 L+ D P + + +++ +I ++ E+ + Sbjct: 535 LI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 574 >gi|261344599|ref|ZP_05972243.1| type III secretion outer membrane pore, YscC/HrcC family [Providencia rustigianii DSM 4541] gi|282567513|gb|EFB73048.1| type III secretion outer membrane pore, YscC/HrcC family [Providencia rustigianii DSM 4541] Length = 567 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 86/251 (34%), Gaps = 21/251 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L + I ++ R L +G + +G F+ + D Sbjct: 312 RRQVELSLWIIDITRSELDNLGVNWEVGSFKAGGG--------------AISFNRSTLPD 357 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F + AL + + ++ P L A F + K ++ Y Sbjct: 358 TSKFLVQIDALSKNGNSQIVSRPVLLTQENVPALFDNNTSFYAKL--QGERIATLEQVTY 415 Query: 313 GVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 G ++ P + + + + + E N +PS +T + + Sbjct: 416 GTMISVMPRISAGQSVEMEVNIEDGAENRDSSGKTSNVEGLPSVNRTSINTVARIAKNSS 475 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 +++ G ++ + + IPLL IP +G LF ++ N+++ P L+ D Sbjct: 476 LLIGGYTREQYVENESKIPLLGDIPWVGRLFSHTSTNQQKMVRIFLIQPRLLDENEAWDG 535 Query: 428 SRPDDHYSVED 438 + + + + + Sbjct: 536 RQFSESHRITE 546 >gi|167724007|ref|ZP_02407243.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei DM98] gi|254183789|ref|ZP_04890381.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] gi|184214322|gb|EDU11365.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] Length = 588 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237 ++ L+I + ++ I E+ D+L++IG S G + D+ G Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386 Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281 + G+ V S + AL+ + ++ A P + + Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLD 446 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338 A + + K S + + + GV L P ++ G RI + + Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|331015110|gb|EGH95166.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 699 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 104/291 (35%), Gaps = 23/291 (7%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L++ + + I ++ R+ L ++ + + S G GG Sbjct: 303 KAMYQKLVKELDVPRNL-IEIDAVILDIDRNELAELSSRWNFNTGSVG---------GGA 352 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LHALE + + P++ + Q A Sbjct: 353 NLFDAGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--L 410 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S A + G L P L ++ + + E + + PS R Sbjct: 411 TATSERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRG 470 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + IPLL IP +G LF++ + E Sbjct: 471 NVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFI 530 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 TP L+ D P + + +++ KI ++ E+ + Sbjct: 531 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKKIKERRDGGELPTRG 574 >gi|161503511|ref|YP_001570623.1| hypothetical protein SARI_01587 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864858|gb|ABX21481.1| hypothetical protein SARI_01587 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 484 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 10/231 (4%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + + + V I +V + Q+G S G +F + G + FS + D Sbjct: 253 QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNS---GPNEGDTNGFSTV-ISD 308 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +F L+ALE+++ L++P++ ++ A + T + + Sbjct: 309 TSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTKLQGEKVAKLESITT 366 Query: 313 GVVLHFTPTVLSPG---RIGLRIQ-TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 G +L TP +L+ +I L + + + +P + + + L +G ++ Sbjct: 367 GSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETNPLPEVQNSEIASQATLLAGQSL 426 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +L G + + + IPLL IP+LG LFRN +V Sbjct: 427 LLGGFKQGKQIRSQNKIPLLGDIPVLGHLFRNDTTQVHSVIRLFLIKASVV 477 >gi|62297323|sp|P35819|PILQ_NEIGO RecName: Full=Type IV pilus biogenesis and competence protein pilQ; AltName: Full=Outer membrane protein omc; Flags: Precursor gi|1173875|gb|AAC43603.1| PilQ [Neisseria gonorrhoeae] gi|1589217|prf||2210365A pilQ gene Length = 720 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 96/244 (39%), Gaps = 21/244 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K+++ L++ QV ++ I E + +G + TG +++ A +G Sbjct: 464 RKLIDELDVP-AQQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFG 522 Query: 242 GGD----------------FSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQS 284 GGD G D + L A E + +TLA P + + + Sbjct: 523 GGDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKTKTLANPRVLTQNRKE 582 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 A SG + + + S G S T + L T + G+I + ++ P Sbjct: 583 AKIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLTVTANITPDGQIIMTVKINKDSPRQC 642 Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + + + +T + +GGT+++ G+ +++ +PLL+ P+ ++S Sbjct: 643 ASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLATSPLSATSLKHS 702 Query: 402 RFNR 405 NR Sbjct: 703 GKNR 706 >gi|262039342|ref|ZP_06012655.1| general secretion pathway protein D [Leptotrichia goodfellowii F0264] gi|261746604|gb|EEY34130.1| general secretion pathway protein D [Leptotrichia goodfellowii F0264] Length = 385 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 13/241 (5%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-FAADFGGKFVS 240 +K++ L+ +DQ+ +K TI + ++ +++G +I ++ P+KS A F ++ Sbjct: 141 RKIIKSLD-RPKDQIIIKGTIIDTSSNLFEKLGVDWNINSNNPEPAKSNLVAKFLNGEIT 199 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KT 297 G F+ G F + L I+ A PTL + + + L KT Sbjct: 200 IGSIFASGGKFLGIDF----NLLRENGDIKIEAMPTLLIMEDEEGELKVTEEVLVGEKKT 255 Query: 298 VSSSTGATSVTTHDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRV 353 ++T T + G+V P + +I L+I TE+S + N + + + Sbjct: 256 TKNNTDYTEPIFSEAGIVFKILPEIRKINGEKKILLKIDTEISNFKLTSNYSSGSGAKQK 315 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + T + L +GG+ + GL ++ ++ + +P S IPI+G LF+ R N+E +I+I Sbjct: 316 NQTKTIITLNNGGSTFIGGLKQNVTKETIKKVPFFSSIPIIGPLFKYKRNNKEVRDIYIE 375 Query: 414 A 414 Sbjct: 376 I 376 >gi|320334143|ref|YP_004170854.1| type II and III secretion system protein [Deinococcus maricopensis DSM 21211] gi|319755432|gb|ADV67189.1| type II and III secretion system protein [Deinococcus maricopensis DSM 21211] Length = 676 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 111/247 (44%), Gaps = 30/247 (12%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 Q+ ++V I E+ + +G + G A G + + F L Sbjct: 440 PQINVQVRIQEINETAARTLGVDWNAGF---GNFVVRIAQTGLQAL-----FDPTRALAG 491 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQ----------------SASFTSGGQHLYKT 297 + L+ALE + + + ++T SGQ SA+ SGG+ Sbjct: 492 INLGATLNALETQNMTKRVYDGSVTMQSGQRSVGTAGGAQNASSGASATIKSGGRLEVTI 551 Query: 298 VSSSTGATSVTTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRV 353 S S V DYGV L F P V G I LR++ +V++P + G +P+ + Sbjct: 552 PSESGNI--VRQIDYGVNLDFIDPQVAPDGTITLRVRGQVNQPASPITGGTLPNLLNFTN 609 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 +A TT+ SG T++L+GLL + + + G+P LS +P++G LF + ++ ++++ + Sbjct: 610 SEAQTTITFKSGQTVLLSGLLGTNESRNRTGVPFLSSLPVIGGLFGTEQTSKTQSQLLVV 669 Query: 414 ATPFLVK 420 T +V+ Sbjct: 670 ITGTVVR 676 >gi|312602771|ref|YP_004022616.1| type III secretion outer membrane pore SctC [Burkholderia rhizoxinica HKI 454] gi|306431574|emb|CBK52126.1| type III secretion outer membrane pore SctC [Burkholderia rhizoxinica HKI 454] gi|312170085|emb|CBW77097.1| type III secretion outer membrane pore SctC [Burkholderia rhizoxinica HKI 454] Length = 645 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 102/263 (38%), Gaps = 28/263 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAAD 233 + +++ L++ V ++ I EV D LKQIG TG+ S+ Sbjct: 386 QSLIDALDVK-PRLVEIEAHIIEVDDDALKQIGVDWRAHNSHVDLQTGNGLHSPSSYDGT 444 Query: 234 FGGKFVSEGGDF-----------SVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAI 280 F S D S+ VL + AL+ A R A P + + Sbjct: 445 LNPTFTSNSSDGTTVISTAPLGASLTAVLGNAGRYLLARVDALQSANLARIDASPKVATL 504 Query: 281 SGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSE 338 S A + + +S SV+T GV L P V GR ++++ + + Sbjct: 505 SNAEAVMDHKTRFFVRVAGYTSADLYSVST---GVSLRVRPLVVEEDGRTRIKLEVHIED 561 Query: 339 PVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + D +P +T + ++++AG D L+ GIPLLSKIP++G L Sbjct: 562 GQVTNQLVDHIPVITTSTINTEAFVGQNESLLIAGYRTDSSSNLETGIPLLSKIPLIGGL 621 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 FR R E +P +++ Sbjct: 622 FRYRSDQRSHMERIFLLSPRIIE 644 >gi|237507548|ref|ZP_04520263.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] gi|234999753|gb|EEP49177.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] Length = 588 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 29/263 (11%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-- 237 ++ L+I + ++ I E+ D+L++IG S G + D+ G Sbjct: 328 LIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQI 386 Query: 238 -----FVSEGGDFSVKGVLDRFS-----------FETVLHALERATAIRTLAEPTLTAIS 281 + G+ V S + AL+ + ++ A P + + Sbjct: 387 NPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLD 446 Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSE 338 A + + K S + + + GV L P ++ G RI + + Sbjct: 447 NSEAVMDNTTRFFVKV--SGYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DG 503 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + G ++P + +T + G ++++AG D G+P LSKIP+LGALF Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 R ++ E +P ++ P Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586 >gi|330963059|gb|EGH63319.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. actinidiae str. M302091] Length = 649 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 104/291 (35%), Gaps = 23/291 (7%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L++ + + I ++ R+ L ++ + + S G GG Sbjct: 303 KAMYQKLVKELDVPRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGA 352 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LHALE + + P++ + Q A Sbjct: 353 NLFDAGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--L 410 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S A + G L P L ++ + + E + + PS R Sbjct: 411 TATSERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRG 470 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + IPLL IP +G LF++ + E Sbjct: 471 NVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFI 530 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 TP L+ D P + + +++ KI ++ E+ + Sbjct: 531 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKKIKERRDGGELPTRG 574 >gi|257125412|ref|YP_003163526.1| type II and III secretion system protein [Leptotrichia buccalis C-1013-b] gi|257049351|gb|ACV38535.1| type II and III secretion system protein [Leptotrichia buccalis C-1013-b] Length = 400 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 68/305 (22%), Positives = 125/305 (40%), Gaps = 40/305 (13%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 R++ + L F I ++ + ++ +G I++ +R ++ + Sbjct: 120 RNVKDITEKLNGFFGFEVIGID---NKIIFNGDESKIEEMRRIIKSLDK----------- 165 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFAADFGG 236 ++QV +K TI + ++ +++G SI ++ +K + A F Sbjct: 166 --------------EKEQVIIKGTIIDTSSNLFERLGIDWSINSDNANATKDNLVAKFLN 211 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY- 295 VS FS G F + L+ IR A PTL + + + L Sbjct: 212 GEVSIASIFSKGGRFLGIDF----NLLKENGDIRIEAMPTLMIMENEEGELKVTEEVLVG 267 Query: 296 --KTVSSSTGATSVTTHDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVNAGDMP- 349 KT T + G+V P + +I L+I TE+S + + Sbjct: 268 EKKTTKKDTEYVEPIFSEAGIVFKINPEIRKINGIKKILLKIDTEISNFKLTSSYNASSG 327 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + + TT+ L +GG+ + GL +D ++ +P+LSKIPI+G LF+ R NRE + Sbjct: 328 AKQKNQTKTTITLNNGGSTFIGGLKQDVSKETIRRVPVLSKIPIVGPLFKYRRTNRELRD 387 Query: 410 IFIAA 414 I+I Sbjct: 388 IYIEI 392 >gi|205352890|ref|YP_002226691.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272671|emb|CAR37581.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|309243418|gb|ADO51994.1| SsaC [Salmonella enterica subsp. enterica serovar Gallinarum] gi|326627962|gb|EGE34305.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 497 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + D +F L+ALE+++ L++P++ ++ A + T Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP +L+ +I L + + + + D +P + Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLDLNIQDGQQSDTQSETDPLPEVQNS 425 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485 Query: 415 TPFLV 419 +V Sbjct: 486 KASVV 490 >gi|94496757|ref|ZP_01303332.1| putative type III secretion protein YscC [Sphingomonas sp. SKA58] gi|94423770|gb|EAT08796.1| putative type III secretion protein YscC [Sphingomonas sp. SKA58] Length = 599 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 28/257 (10%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + + ++ L++A V L+ TI ++ D L+++G S + A FGG V Sbjct: 319 AYEGLVRSLDVA-PQIVELEATIIDINVDRLRELGINWRFR------SGDWGALFGGDIV 371 Query: 240 SEGGD--------------FSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQS 284 G+ S+ G++ + F + ALE A + ++ P L +S Sbjct: 372 RRTGNPLTDSLNTGSVNRGLSLSGIIGANNEFIARISALEEKGAAKVVSRPQLVTLSNVE 431 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVI 341 A F + + G VL P VL RI + + E + Sbjct: 432 AVFDRTRTFYVRVAGDR--QVDLFNVTAGTVLRVNPHVLVDNGQPRIRMVVNVEDGALLD 489 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G +P +T + G +++L GL + + IP+L +IP+LG LF++ Sbjct: 490 G-TVDRIPVVERASVNTQALIAEGESLLLGGLTVNSDMDAETAIPVLGQIPVLGELFKSR 548 Query: 402 RFNREETEIFIAATPFL 418 R+ E +P + Sbjct: 549 SKRRQHVERLFLISPRI 565 >gi|207857100|ref|YP_002243751.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708903|emb|CAR33233.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 497 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + D +F L+ALE+++ L++P++ ++ A + T Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP +L+ +I L + + + + D +P + Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485 Query: 415 TPFLV 419 +V Sbjct: 486 KASVV 490 >gi|268592383|ref|ZP_06126604.1| type III secretion outer membrane pore, YscC/HrcC family [Providencia rettgeri DSM 1131] gi|291312169|gb|EFE52622.1| type III secretion outer membrane pore, YscC/HrcC family [Providencia rettgeri DSM 1131] Length = 567 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 94/270 (34%), Gaps = 22/270 (8%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 +Q ++++N L++ QV L + I ++ R L +G + ++G Sbjct: 294 SQEQIRYVRQLVNTLDMR-RRQVELSLWIIDITRSELDNLGVNWEVGTFNTGTGSV---- 348 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F+ + + F + AL + ++ P L A F + Sbjct: 349 ----------SFNRSTLSNSQQFLLQIDALNKTGNGHIVSRPVLLTQENIPALFDNNTSF 398 Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDM 348 K ++ YG ++ P + + + + + E + + Sbjct: 399 YAKL--QGERIATLEQVTYGTMVSVMPRISAGNNVEMEVNIEDGAENRDSMGKTSSVEGL 456 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ +T + ++++ G ++ + + IP L +P +G LF +S N+++ Sbjct: 457 PAVNRTSINTVARIAKDSSLLIGGYTREQYVENESKIPFLGDLPYVGGLFSHSSMNQQKM 516 Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 P L+ D + + + + Sbjct: 517 VRLFLIQPRLLDENEGWDGRQFSEKTRITN 546 >gi|41019214|gb|AAR98526.1| HrcC [Pseudomonas syringae pv. phaseolicola] Length = 699 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 106/287 (36%), Gaps = 23/287 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +K++ L+++ + + I ++ R+ L ++ + + SS G GG + + Sbjct: 307 EKLIKELDVSRNL-IEIDAVILDIDRNELAELFNRWNFNASSVG---------GGVNLFD 356 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + + F + LHALE + + P++ + Q A ++S Sbjct: 357 AGTSSTMFIQNAGKFXSELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI--TATS 414 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 ++ G L P L ++ L + E + I PS R T Sbjct: 415 ERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVST 474 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417 + G++V+ G + IPLL IP +G LF++ + E TP Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELGQRERLFILTPR 534 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 L+ D P + + +++ +I ++ E+ + Sbjct: 535 LI-----GDQVNPARYVQNGNPHDVD--DQIKRIKERRDGGELPTRG 574 >gi|77918480|ref|YP_356295.1| putative secretion pathway protein [Pelobacter carbinolicus DSM 2380] gi|77544563|gb|ABA88125.1| putative secretion pathway protein [Pelobacter carbinolicus DSM 2380] Length = 606 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 54/334 (16%), Positives = 113/334 (33%), Gaps = 44/334 (13%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTI 202 G Q+ A+ L+ + + A S + ++N + +QV L+V I Sbjct: 278 GEQSRQQEDDEAL-LAVLTVFKRNNCIVARSLDEGLLNEMGRIIEALDTPTNQVLLEVRI 336 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 ++ + + F+ G + G G ++ + D F + Sbjct: 337 LQLNLNDGFESFFEFEYEGGDN--------TLGLLGTKALGATTLNYLFDNDRFRARIAL 388 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------------TGATSVTT 309 E+ + ++ P L A + F G + + +S T + Sbjct: 389 YEKEGRLEVVSTPFLMAANNSKVEFFVGEETPLRGEVTSETTTIKDTGTTLTTFTQEIEE 448 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------------MPSYRVRKA 356 + G + T + + G + L E+S P + + + + Sbjct: 449 EELGTDVEMTTFINADGTVTLDFDAEISSPQLAYSTVQAVNDITGEILEYPIDGTTKSEI 508 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + SG +I + G++++ I +P+L IP +G FR + +TE I TP Sbjct: 509 KAILSARSGQSIAIGGIIRETIDDSIAKVPVLGDIPGVGFFFREVEKTKSKTETVILLTP 568 Query: 417 FLV-KPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 ++ P +S+ + + + R N Sbjct: 569 HVIMHPALAGQVSQ--EFLGRKSSHEQVTVGREN 600 >gi|197247911|ref|YP_002146647.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211614|gb|ACH49011.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 497 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + D +F L+ALE+++ L++P++ ++ A + T Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP +L+ +I L + + + + D +P + Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485 Query: 415 TPFLV 419 +V Sbjct: 486 KASVV 490 >gi|167551637|ref|ZP_02345391.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168263775|ref|ZP_02685748.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463196|ref|ZP_02697127.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194442462|ref|YP_002040647.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|198244927|ref|YP_002215736.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|194401125|gb|ACF61347.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195633943|gb|EDX52295.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197939443|gb|ACH76776.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205323577|gb|EDZ11416.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205347635|gb|EDZ34266.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|326623484|gb|EGE29829.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 497 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + D +F L+ALE+++ L++P++ ++ A + T Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP +L+ +I L + + + + D +P + Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485 Query: 415 TPFLV 419 +V Sbjct: 486 KASVV 490 >gi|325921916|ref|ZP_08183727.1| HrcC protein [Xanthomonas gardneri ATCC 19865] gi|325547618|gb|EGD18661.1| HrcC protein [Xanthomonas gardneri ATCC 19865] Length = 606 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 89/241 (36%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSF---AADFGGKFVSEGGDF 245 + TI E+R ++ +G TG G + + + Sbjct: 369 QIDATIIEIRDGAMQDLGVDWRFHSRRVDVQTGDGRGGQLGYDGSLSGAAAAGATAPLGG 428 Query: 246 SVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 ++ VL T + ALE+ + ++ P + + A Q + S Sbjct: 429 TLTAVLGDAGRYLMTRVSALEQTDKAKIVSTPQVATLDNVEAVMDHKQQAFVRV--SGYA 486 Query: 304 ATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 A + GV L P+V G++ L ++ E + +P + T Sbjct: 487 AADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGANTVDGIPVITSSEITTQA 545 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG +D Q +P LSKIP++G LF++ + + + TP +V Sbjct: 546 FVNEGQSLLIAGYAQDTDQTDLNKVPGLSKIPLVGNLFKHRQKSGSRLQRLFLLTPHIVS 605 Query: 421 P 421 P Sbjct: 606 P 606 >gi|148270748|ref|YP_001245208.1| type II and III secretion system protein [Thermotoga petrophila RKU-1] gi|147736292|gb|ABQ47632.1| type II and III secretion system protein [Thermotoga petrophila RKU-1] Length = 387 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 6/225 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV + V + E+ RD ++G S G + F ++ G +V+ + Sbjct: 165 PQVKISVIVTEISRDYSNELGLN--SLDYSFGSGQEFNENWTATLGLVTGILNVQTDVFG 222 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 L LE + A+P + SG+ AS G + + + + + + + D G Sbjct: 223 -QILAKLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQVV-LLEAEGAVSRIESIDVG 280 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V + P V+ + L + +VS + + + TT+ L +G T+V++G Sbjct: 281 VSIEIQPRVMDKEELELTLSPKVSHFAG--EKLGTFAVKQNELSTTLFLKNGQTVVISGA 338 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +D Q G+P+L+KIP++ LF + + E++I + Sbjct: 339 TIEDSAQTGSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383 >gi|304311658|ref|YP_003811256.1| Type III secretion pathway protein [gamma proteobacterium HdN1] gi|301797391|emb|CBL45611.1| Type III secretion pathway protein [gamma proteobacterium HdN1] Length = 598 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 95/256 (37%), Gaps = 22/256 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----------F 230 + ++ L++ + ++ TI +V D L++ G + + Sbjct: 327 ENLVKNLDVPSPV-IEIEATIIDVNTDKLREQGVDWGWSNGRTSAMTGEVDAKNNFLEVL 385 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 A D G + + +R F L+ LER ++ + P + ++ A S Sbjct: 386 AGDAISGLAQNAGMQAGTIIGNRNRFVARLNLLEREGVVKVASRPKVVTLNDLEAVLESS 445 Query: 291 GQHLYKTVSSSTGATSVTTHDY--GVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNA 345 GA V G VL TP V++ +I L I E + + Sbjct: 446 RSVYVPVQ----GAYDVDLFKVFSGTVLRVTPHVINDVGTKKIRLIISAE-DGVIDEHST 500 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + PS T + +++L GL + + +PLL IP+LGALFR+ Sbjct: 501 NNAPSVTRNAVSTQAVIEGETSLLLGGLSRTESITQVRKVPLLGSIPLLGALFRSEAKVV 560 Query: 406 EETEIFIAATPFLVKP 421 + +E TP L++ Sbjct: 561 QNSERLFLITPRLLED 576 >gi|168233588|ref|ZP_02658646.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239278|ref|ZP_02664336.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194471885|ref|ZP_03077869.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734057|ref|YP_002114408.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204927561|ref|ZP_03218762.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194458249|gb|EDX47088.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709559|gb|ACF88780.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288005|gb|EDY27392.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322903|gb|EDZ08099.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205332374|gb|EDZ19138.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 497 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + D +F L+ALE+++ L++P++ ++ A + T Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP +L+ +I L + + + + D +P + Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485 Query: 415 TPFLV 419 +V Sbjct: 486 KASVV 490 >gi|56413635|ref|YP_150710.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362559|ref|YP_002142196.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127892|gb|AAV77398.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094036|emb|CAR59532.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 497 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + D +F L+ALE+++ L++P++ ++ A + T Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP +L+ +I L + + + + D +P + Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485 Query: 415 TPFLV 419 +V Sbjct: 486 KASVV 490 >gi|76663415|emb|CAE47791.1| pilus assembling protein [Bdellovibrio bacteriovorus] Length = 510 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 132/333 (39%), Gaps = 29/333 (8%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--------SQSGRN 174 + + R I + I V V++ ++L G + ++S+RA +++T+L + G Sbjct: 190 IAEFIARDINNPEIEVRAVNEKIILQGWANSDEESKRAEIIAKTYLPDIVIEAAEEKGVI 249 Query: 175 QYANSSSKKVMNLLNI------AGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPS 227 + ++ V+NL+ I A + L V E+ +D K FQ + G +S + Sbjct: 250 KKRKPANDGVINLIQIKAAPPAAPAKMIQLVVHYVELNKDYSKAFKFQFTPELGDNSTMT 309 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 D G +S S+ G + + L+ ++ R L +L G+ Sbjct: 310 FQTGGDSPGGVIS-----SITGTVS--NLLPKLNWAKQHGHARVLESTSLIVEDGKKGEI 362 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL--SPGRIGLRIQTEVSEPVIGVNA 345 Y + G + G+V TP +L G + + + +VS ++G Sbjct: 363 KQVTNQPYPVI-GKDGTQGTAFAEVGIVTSITPQLLGEKSGSVRMDMAFKVS-SLLGNTP 420 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P + + V + + + GL+++ P K PI+ +L+ + F + Sbjct: 421 SGAPITSANEMSSAVTVRDRQSAAVGGLIRNSTSTGYNR-PAGQKNPII-SLYASKDFIK 478 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 ++++ + TP +VK A + + + D Sbjct: 479 QQSQFVVFVTP-IVKTSASSGAEQIKKKFRLRD 510 >gi|16764744|ref|NP_460359.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|1498307|gb|AAC44301.1| SpiA [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419915|gb|AAL20318.1| secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261246600|emb|CBG24410.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993282|gb|ACY88167.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157929|emb|CBW17424.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912379|dbj|BAJ36353.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224019|gb|EFX49082.1| Secretion system apparatus SsaC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129666|gb|ADX17096.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988281|gb|AEF07264.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 497 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + D +F L+ALE+++ L++P++ ++ A + T Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP +L+ +I L + + + + D +P + Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485 Query: 415 TPFLV 419 +V Sbjct: 486 KASVV 490 >gi|150026329|ref|YP_001297155.1| general secretion pathway protein D precursor [Flavobacterium psychrophilum JIP02/86] gi|149772870|emb|CAL44354.1| Putative bacterial general secretion pathway protein D precursor [Flavobacterium psychrophilum JIP02/86] Length = 720 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 95/245 (38%), Gaps = 23/245 (9%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD----FGGKFVSEG-------GD 244 + ++V + EV + + GF I + + G + +++ G Sbjct: 477 ILIEVMLLEVSKSATIETGFSAGIGDKPVTTKGTVFPNSDIVLGAQTINKIINSFDGFGS 536 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ V+ F+ L A+E ++ + P L+ ++G A + G Y + + Sbjct: 537 LNIGSVVPNFNLS--LKAMESNGNLKIRSAPRLSTLNGHKAYLSIGETTYYVVTNQNFYG 594 Query: 305 TSV---------TTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVR 354 + + D + + P V G+I + I+ + S V+ P R Sbjct: 595 SQIPQTSEVKNYQPIDAELSVTIMPLVSGDGQITMDIKVIQSSFNGQKVDKNAPPGINSR 654 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + + + IVL GL + G+P+L++IPI+ LF + + ++ + Sbjct: 655 EFTSIIRVKDQDLIVLGGLEEKVKNDSGSGVPILARIPIIKWLFSSRKREDSNKKLTVLI 714 Query: 415 TPFLV 419 P ++ Sbjct: 715 KPTVI 719 >gi|322615120|gb|EFY12043.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619963|gb|EFY16836.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622274|gb|EFY19119.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627796|gb|EFY24586.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632859|gb|EFY29603.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636650|gb|EFY33353.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641157|gb|EFY37799.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644908|gb|EFY41441.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650255|gb|EFY46669.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655829|gb|EFY52131.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660154|gb|EFY56393.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665279|gb|EFY61467.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669536|gb|EFY65684.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673462|gb|EFY69564.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677390|gb|EFY73454.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679947|gb|EFY75986.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687419|gb|EFY83391.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193477|gb|EFZ78684.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198609|gb|EFZ83710.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323208655|gb|EFZ93593.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211192|gb|EFZ96039.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217632|gb|EGA02347.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218980|gb|EGA03490.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223665|gb|EGA07975.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229434|gb|EGA13557.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232657|gb|EGA16753.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240305|gb|EGA24349.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242706|gb|EGA26727.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245918|gb|EGA29906.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252482|gb|EGA36329.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255189|gb|EGA38968.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260064|gb|EGA43689.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267172|gb|EGA50657.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271505|gb|EGA54926.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 497 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + D +F L+ALE+++ L++P++ ++ A + T Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP +L+ +I L + + + + D +P + Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485 Query: 415 TPFLV 419 +V Sbjct: 486 KASVV 490 >gi|222100424|ref|YP_002534992.1| General secretion pathway protein D [Thermotoga neapolitana DSM 4359] gi|221572814|gb|ACM23626.1| General secretion pathway protein D [Thermotoga neapolitana DSM 4359] Length = 387 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 6/225 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV + V + EV +D ++G S G + F ++ G +V+ + Sbjct: 165 PQVKISVIVTEVSKDYSNELGLN--SLDYSFGSGQEFNENWSATLGLVTGLINVQTDVFG 222 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 L LE + A+P + SG+ AS G + + + + + + + D G Sbjct: 223 -QILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQVV-LLQAEGAVSRIESIDVG 280 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V + P V+ + L + +VS + + + TT+ L +G T+V++G Sbjct: 281 VSIDIQPRVMDKEELELTLSPKVSHFAG--EKLGTFAVKQNELSTTLFLKNGQTVVISGA 338 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +D Q G+P+L+KIP++ LF + + E++I + Sbjct: 339 TIEDNAQTSSGVPILNKIPLIRYLFGGTMKKDSQKELYIFIKAEI 383 >gi|161614190|ref|YP_001588155.1| hypothetical protein SPAB_01932 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363554|gb|ABX67322.1| hypothetical protein SPAB_01932 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 497 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + D +F L+ALE+++ L++P++ ++ A + T Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP +L+ +I L + + + + D +P + Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485 Query: 415 TPFLV 419 +V Sbjct: 486 KASVV 490 >gi|16760517|ref|NP_456134.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141723|ref|NP_805065.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|168822263|ref|ZP_02834263.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|213051564|ref|ZP_03344442.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428550|ref|ZP_03361300.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213647233|ref|ZP_03377286.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854968|ref|ZP_03383208.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238913201|ref|ZP_04657038.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|25511812|pir||AB0700 probable outer membrane secretory protein spiA [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502813|emb|CAD01971.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137351|gb|AAO68914.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|205341330|gb|EDZ28094.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086125|emb|CBY95899.1| Yop proteins translocation protein C Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 497 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + D +F L+ALE+++ L++P++ ++ A + T Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP +L+ +I L + + + + D +P + Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485 Query: 415 TPFLV 419 +V Sbjct: 486 KASVV 490 >gi|257092071|ref|YP_003165712.1| type II and III secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044595|gb|ACV33783.1| type II and III secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 770 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 100/265 (37%), Gaps = 37/265 (13%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------SGPSKSFAADFGGKFVSEGGDF 245 QV L++ I EVR D + F G+S G + D + G F Sbjct: 335 PRQVLLEMKILEVRLDNGFRSVFDIGFAGTSKSTGPLPVGVLPTTVPDQYARNAGTTGMF 394 Query: 246 SVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---- 295 ++ S L + ++ L+ P L A + A G + + Sbjct: 395 DIEQDATMLWQYMSKSLSLRFQLLAQENKLKVLSSPMLVAANNHPARLFIGDERVLTVGA 454 Query: 296 --KTVSSSTGATSV------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------- 340 ++++ +TGAT+ D G L P + + L I + S Sbjct: 455 SSQSITGTTGATNTQITVETERRDVGQTLSILPRINGDRSVTLTIDQDSSTVRLRDGTIP 514 Query: 341 IGVNAGDMPSYRVRKADT-----TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 I G + + + T T G T+ + G+++D +++ +E +P+L IP+LG Sbjct: 515 IATGTGGVVYFPIDTVSTANLQVTAHAQDGMTVAIGGMIRDSLERDEEKVPVLGDIPVLG 574 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 LF+ ++I + TP +++ Sbjct: 575 YLFKRDVRASIRSQIVLLITPRVLE 599 >gi|227114189|ref|ZP_03827845.1| type III secretion protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 689 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 109/320 (34%), Gaps = 33/320 (10%) Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 S V L G + + A+ + ++ + +++++ +++ ++ V + Sbjct: 277 ASGRVTLSGKI-SADVRNNALLI--------RDDEKRRAEYQQLVDHIDVP-QNLVNIDA 326 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 I +V R L ++ + + FVS D F + Sbjct: 327 IILDVDRTALSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADI 375 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ALE +A P++ + Q A ++ + G L TP Sbjct: 376 QALEGEGTASIVANPSVLTLENQPA--IVDFSRTAFITATGERVADIQPVTAGTSLQVTP 433 Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 V+ G I L I E + G G+ + T + +VL G ++ Sbjct: 434 RVIGEGAQRSIQLVIDIEDGQVETGRE-GEASGVKRGTVSTQALIGENRALVLGGFHVEE 492 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 IP+L IP+LG LF ++R E TP LV D + P + S Sbjct: 493 SGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSA 547 Query: 438 DDAKAF-FFNRVNKIYGPKE 456 + + NRV + G + Sbjct: 548 NRQQLNGAMNRVAQRNGKTD 567 >gi|197264837|ref|ZP_03164911.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243092|gb|EDY25712.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 497 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + D +F L+ALE+++ L++P++ ++ A + T Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP +L+ +I L + + + + D +P + Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485 Query: 415 TPFLV 419 +V Sbjct: 486 KASVV 490 >gi|62179985|ref|YP_216402.1| secretion system apparatus SsaC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168240906|ref|ZP_02665838.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448307|ref|YP_002045398.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200390529|ref|ZP_03217140.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|224584095|ref|YP_002637893.1| outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62127618|gb|AAX65321.1| Secretion system apparatus SsaC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194406611|gb|ACF66830.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199602974|gb|EDZ01520.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205339640|gb|EDZ26404.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224468622|gb|ACN46452.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714452|gb|EFZ06023.1| secretion system apparatus SsaC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 497 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + D +F L+ALE+++ L++P++ ++ A + T Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 365 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP +L+ +I L + + + + D +P + Sbjct: 366 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 425 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 426 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 485 Query: 415 TPFLV 419 +V Sbjct: 486 KASVV 490 >gi|15643874|ref|NP_228923.1| general secretion pathway protein D, putative [Thermotoga maritima MSB8] gi|4981663|gb|AAD36193.1|AE001770_5 general secretion pathway protein D, putative [Thermotoga maritima MSB8] Length = 387 Score = 130 bits (326), Expect = 7e-28, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 6/225 (2%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV + V + EV +D ++G S G + F ++ G V+ + Sbjct: 165 PQVKISVIVTEVSKDYSNELGLN--SLDYSFGSGQEFNENWSATLGLVTGIIDVQTDVFG 222 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 L LE + A+P + SG+ AS G + + + + + + + D G Sbjct: 223 -QILAQLKLLEEDQKAKITADPWIIVKSGEKASLFLGERQVV-LLQAEGAVSRIESIDVG 280 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V + P V+ + L + +VS + + + TT+ L +G T+V++G Sbjct: 281 VSIDIQPRVMDKEELELTLSPKVSHFAG--EKLGTFAVKQNELSTTLFLKNGQTVVISGA 338 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +D Q G+P+L+KIP++ LF + + E++I + Sbjct: 339 TIEDSAQTSSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383 >gi|94987602|ref|YP_595535.1| putative type III secretion protein YscC [Lawsonia intracellularis PHE/MN1-00] gi|94731851|emb|CAJ55214.1| putative type III secretion protein YscC [Lawsonia intracellularis PHE/MN1-00] Length = 583 Score = 130 bits (326), Expect = 7e-28, Method: Composition-based stats. Identities = 68/383 (17%), Positives = 141/383 (36%), Gaps = 46/383 (12%) Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR------ 128 + +V S TM +F A+ I+I Q ++ + + + L L Sbjct: 159 SIFEVSQLSNITMRVFPLKYASADDIVI-----QSMDKTVTVPGIASILRAMLNGQQETA 213 Query: 129 RFIADSNIRVEMV-SDTVVLHGMVRTIQDSQRAVELSETFLSQSGR--------NQYANS 179 I + V + + + G +T + ++ + + + R Y Sbjct: 214 TTIVEQPATVNKLNGEGLASKGKEKTEKGNEVKQQAAGVNIMADPRMNAVVINDAAYRMP 273 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---- 235 ++V++ L+ E V + I ++ + + +GF ++ SS S + DF Sbjct: 274 YYEEVIHDLDKPLEL-VEIHAAIVDIDSEFKRDLGF--TLQQGSSKKSMTMGGDFSTTQQ 330 Query: 236 --------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 G G +S F + ALE R L +P++ + A+ Sbjct: 331 SLPLEITKGTVEGGGLTYSTIYSKGVEFFLARVQALETEGEARVLGKPSVLTVDNIQATL 390 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR----IGLRIQTEVSEPVIGV 343 + + + T + + G VL TP ++ I L + E ++ Sbjct: 391 ENTSTYYIQVQGYQT--VDLFKVESGTVLRVTPHIIYNNDGTKSIKLVVAIEDNQNDNST 448 Query: 344 NAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + +P + + +T + +G ++++ G + +GIP+L IPI+G LF Sbjct: 449 DPTVGSNVVLPPIKQTRINTQGVVNTGQSLLIGGYYYEQQGVNDKGIPILKDIPIIGYLF 508 Query: 399 RNSRFNREETEIFIAATPFLVKP 421 + + ++ E I TP ++ P Sbjct: 509 KTNTKTSKKMERLILITPRIIMP 531 >gi|42521752|ref|NP_967132.1| putative pilus assembly transmembrane protein [Bdellovibrio bacteriovorus HD100] gi|39574282|emb|CAE77786.1| putative pilus assembly transmembrane protein [Bdellovibrio bacteriovorus HD100] gi|51468906|emb|CAE47779.1| pilus assembling protein [Bdellovibrio bacteriovorus] Length = 509 Score = 130 bits (326), Expect = 7e-28, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 130/334 (38%), Gaps = 31/334 (9%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL--------SQSGRN 174 + + R I + I V V++ ++L G + ++++RA +++T+L + G Sbjct: 189 IAEFIARDINNPEIEVRAVNEKIILQGWANSDEEAKRAEIIAKTYLPDIVIEAAEEKGVI 248 Query: 175 QYANSSSKKVMNLLNI------AGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGP 226 + ++ V+NL+ I + L V E+ +D K FQ + + +S Sbjct: 249 KKRRPANDGVINLIQIKEAPAKPPSKMIQLVVHYVELNKDYSKAFKFQFTPELGDNSQMT 308 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 ++ GG S G S + L+ ++ R L +L G+ Sbjct: 309 FQTGGDSPGGVISSITGTVS--------NLLPKLNWAKQHGHARVLESTSLIVEDGKKGE 360 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL--SPGRIGLRIQTEVSEPVIGVN 344 Y + G + G+V TP +L G + + + +VS ++G Sbjct: 361 IKQVTNQPYPVI-GKDGTQGTAFAEVGIVTAITPVLLGEKSGSVHMEMAFKVS-SLLGNT 418 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P + +TV + + + GL+++ P K PI+ +L+ + F Sbjct: 419 PSGAPITSANEMTSTVTVRDRQSAAVGGLIRNSTSTGYNR-PAGQKNPII-SLYASKDFI 476 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 +++++ + TP +VK A + + + D Sbjct: 477 KQQSQFVVFVTP-IVKTSASSGAEQIKKKFRLRD 509 >gi|237799995|ref|ZP_04588456.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022850|gb|EGI02907.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. oryzae str. 1_6] Length = 700 Score = 130 bits (326), Expect = 7e-28, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 102/291 (35%), Gaps = 23/291 (7%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 +K++ L++ + + I ++ R+ L ++ + + S GG Sbjct: 304 KGMYQKLVKELDVPRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVS---------GGA 353 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LHALE + + P++ + Q A Sbjct: 354 NLFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--L 411 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S A + G L P L ++ + + E + + PS R Sbjct: 412 TATSERAAEILPITAGTSLQVIPRSLDHDGKSQVQMIVDIEDGQIDVSTINDTQPSVRRG 471 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + +PLL IP +G LF++ + E Sbjct: 472 NVSTQAMIAEHGSLVIGGFHGLEANDRIHKVPLLGDIPYIGKLLFQSRSRELSQRERLFI 531 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 TP L+ D P + + +++ +I ++ E+ + Sbjct: 532 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKQRRDGGELPTRG 575 >gi|284007407|emb|CBA72822.1| type III secretion outer membrane pore, YscC,HrcC,InvG [Arsenophonus nasoniae] Length = 539 Score = 130 bits (326), Expect = 7e-28, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 115/308 (37%), Gaps = 21/308 (6%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176 +I+ L+ +++ D V +++ ++ L G + Sbjct: 222 SNNISKLKNHIQKKNQDEL--VNQSNNSSLIENSPLNKGLVSIISNPGNNSLLIKGNKEQ 279 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 N +K++ L+I + + L V I ++ + L Q+G + S G+ G + + G Sbjct: 280 VNYL-RKIVEQLDIT-KRHIELSVWIIDIEKKALDQLGIKWS-GGAKIGQKLGVSLNAG- 335 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +D SF T + AL R ++ P + A F + K Sbjct: 336 -----------TSTIDGASFMTAIFALTRNDKANIVSRPMVLTQENIPAIFDNNRTFYTK 384 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 + AT + YG + P +I + I E G +P Sbjct: 385 LIGER--ATDLKNVTYGTAISVLPRFTINNQIEMMITVE-DGSRAGQITDHLPEIGRTNI 441 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T +P ++++ G +D+ + ++E IPLL IP LG+LFR + ++ P Sbjct: 442 STIARVPQNKSLLIGGYTRDEHRNIEEKIPLLGDIPYLGSLFRYNIEKKDSLVRVFLIQP 501 Query: 417 F-LVKPVA 423 ++ P++ Sbjct: 502 REIINPLS 509 >gi|289675697|ref|ZP_06496587.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 137 Score = 129 bits (325), Expect = 9e-28, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 4/137 (2%) Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 A P+L A++GQSASF +GG+ + S+ ++GV L TPTV+ RI L++ Sbjct: 1 ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 60 Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 EVSE I + +P+ +R+ DT++ L G + V++GL+ + P L Sbjct: 61 APEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGL 120 Query: 389 SKIPILGALFRNSRFNR 405 IPILGA FR+S+ R Sbjct: 121 GDIPILGAFFRSSQIQR 137 >gi|323202935|gb|EFZ87970.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 429 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 11/245 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 185 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 240 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + D +F L+ALE+++ L++P++ ++ A + T Sbjct: 241 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 297 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP +L+ +I L + + + + D +P + Sbjct: 298 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 357 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 358 EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLI 417 Query: 415 TPFLV 419 +V Sbjct: 418 KASVV 422 >gi|171915159|ref|ZP_02930629.1| putative outer membrane protein (ComQ) [Verrucomicrobium spinosum DSM 4136] Length = 809 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 65/332 (19%), Positives = 118/332 (35%), Gaps = 92/332 (27%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSFAADFG----- 235 + ++ A QV ++V + E+ LK++GF + + G + FA G Sbjct: 463 DEYVDQAVNATPKQVEIQVRMIEINETRLKELGFDWLLGQFNVPGSDRVFAGGAGTADPN 522 Query: 236 ------GKFVSEG------------------------------GDFSVKGVLDRFSFETV 259 G+ V+ G G F+V GV F+ V Sbjct: 523 DPAPFPGQSVTSGLRSSGAILGVPSIDGLIGRATVPSANSKSPGFFAVSGVFTDPQFQVV 582 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---------------------- 297 L L+++ + LA PT+ SGQ A+ T + Y T Sbjct: 583 LRGLKQSKGVDILAAPTVITKSGQRANVTVAKEFRYPTEFDPPQIPQNLSANVNGVQYVA 642 Query: 298 ---VSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTE--------------VSEP 339 + + T+ D G+ L P V S R + L + + Sbjct: 643 NFAPITPSTPTAFEKRDVGITLEVEPVVGSGNRTVDLNLVPSSVEFEGFIDYGTDIQNSA 702 Query: 340 VIGVNAGDM----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 +G+ D+ P +R K T+V + G T+VL G+ + ++ + +P++ Sbjct: 703 PVGIGGADVFFNVPNDILQPIFRTNKITTSVSVWDGNTVVLGGVTFEKRHKIDDKVPVVG 762 Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P++G F++ N E + T ++ P Sbjct: 763 DLPLVGRAFQSKVSNVERKNVLFFVTVRVIDP 794 >gi|149926070|ref|ZP_01914333.1| putative type III secretion protein [Limnobacter sp. MED105] gi|149825358|gb|EDM84569.1| putative type III secretion protein [Limnobacter sp. MED105] Length = 530 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 58/293 (19%), Positives = 99/293 (33%), Gaps = 19/293 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQY---ANSSSKKVMNLLNIAGED--QVTLKVTI 202 G+ + D E + A S NL++ + ++ + Sbjct: 215 SGVKKKADDDPEKAEFVSVTADPRTNSILIRDAKSKYDYYKNLIDQLDRQVAMIEVEAMM 274 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG--DFSVKGVLDRFSFETVL 260 EV + L ++G + + S FA DF G V ++D F L Sbjct: 275 VEVDQKGLNELGLEFGLL------SDRFAYDFPGSGVGRPSLIAAGATSIVDPMRFMARL 328 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 AL + LA PT+ SA + S V G +L TP Sbjct: 329 KALSADENAKVLARPTIVTQDNVSAYIDLSQTLYIQV--SGERVADVIPITAGSLLQVTP 386 Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 V+ RI LRI+ + +MP + T + I++ G ++ Sbjct: 387 RVVIDEQEERIFLRIEIQDGSLTENTQGINMPRVQNTSLSTQAVIQREKAILIGGYNRES 446 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSR 429 + +PLL IP +G F ++ + TP L+ +P+ + +R Sbjct: 447 TEVNDYKVPLLGDIPYIGKAFTSTEKRTQTVARLFLITPRLIDRPIHDSESTR 499 >gi|319795612|ref|YP_004157252.1| type III secretion outer membrane pore, yscc/hrcc family [Variovorax paradoxus EPS] gi|315598075|gb|ADU39141.1| type III secretion outer membrane pore, YscC/HrcC family [Variovorax paradoxus EPS] Length = 613 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 70/382 (18%), Positives = 130/382 (34%), Gaps = 37/382 (9%) Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 P A+V+ R++Y G++ G + G +L I R I Sbjct: 226 PGVANVL----RSLY--GRHNGATGSAVSGGGRVNGSSLSIGPNRQIKLRSGESINAPKM 279 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAG 192 V + D G V I + + R+ A + ++++ +++ Sbjct: 280 ELSGVGSMGDGGATLGGVSGIGGELPQFQADTRMNAVLVRDTPARMAQYERLIASMDVR- 338 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPSKSFAAD 233 + ++VTI ++ D L +G + GS + + + Sbjct: 339 PRLIEIEVTIMDISSDTLSSLGVDWRLHGRHYDFQTGRGDRGPLTWDGSGNEAGQIGGVN 398 Query: 234 FGGKFVSEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G V+ G + + R + AL +A P + + A + Sbjct: 399 SNGNPVTPLGAMFTAAIGNSARNYLLARVTALASNGEANFVARPKVMTLDNTEAVLENMS 458 Query: 292 QHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGD 347 + + G SVT G + TP ++ + + I V V Sbjct: 459 EFYVRVDGFQDAGLFSVT---AGTAVRVTPLIIDEKTGRGVMMSIDI-VDGDVSTQAVDR 514 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P R R +T + G ++++AG ++ G+PLL +P +G LF+ S + Sbjct: 515 IPIVRRRSVNTQALVDEGASLLIAGYSSEERANAVTGVPLLKDLPGVGNLFKYSDKKQVN 574 Query: 408 TEIFIAATPFLVKPVAMRDLSR 429 E F TP LV P + L Sbjct: 575 MERFYLLTPRLVSPGSSTALPT 596 >gi|167030895|gb|ABZ05763.1| HrcC [Pectobacterium carotovorum subsp. carotovorum] Length = 689 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 108/320 (33%), Gaps = 33/320 (10%) Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 S V L G + + A+ + ++ + ++++ +++ ++ V + Sbjct: 277 ASGRVTLSGKI-SADVRNNALLI--------RDDEKRRAEYQQLVEHIDVP-QNLVNIDA 326 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 I +V R + ++ + + FVS D F + Sbjct: 327 IILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADI 375 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ALE +A P++ + Q A ++ + G L TP Sbjct: 376 QALEGEGTASIVANPSVLTLENQPA--IVDFSRTAFITATGERVADIQPVTAGTSLQVTP 433 Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 V+ G I L I E + G G+ + T + +VL G ++ Sbjct: 434 RVIGEGTQRSIQLVIDIEDGQVETGRE-GEASGVKRGTVSTQALIGENRALVLGGFHVEE 492 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 IP+L IP+LG LF ++R E TP LV D + P + S Sbjct: 493 SGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSA 547 Query: 438 DDAKAF-FFNRVNKIYGPKE 456 + + NRV + G + Sbjct: 548 NRQQLNGAMNRVAQRNGKTD 567 >gi|330819413|ref|YP_004348275.1| Type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia gladioli BSR3] gi|327371408|gb|AEA62763.1| Type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia gladioli BSR3] Length = 596 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 100/266 (37%), Gaps = 33/266 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAAD- 233 +++ L++ V ++ I E+ D L+QIG TG++ SF Sbjct: 333 ELIRQLDVR-PQIVEIQAHIIEIDDDTLQQIGVDWRAHNSHVDFQTGNAQQAQNSFDGGQ 391 Query: 234 ----FGGKFVSEGGDFSVKGVLDRFSFETVL-----------HALERATAIRTLAEPTLT 278 FG + G+ V + V+ AL+ + A P + Sbjct: 392 LNPLFGTVQQAGPGNTIVNATPGGAALSAVVGGAGRYLMARVSALQSTNKTKIDASPLVA 451 Query: 279 AISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQT 334 + A+ + + K +S SV+T GV L P ++ RI L + Sbjct: 452 TLDNVEATMDNTTRFFVKVAGYTSADLYSVST---GVSLRVLPLIVRDQDKTRIKLNVHI 508 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 E + D+P + +T + G ++++AG D G+P LS+IP+L Sbjct: 509 E-DGQLTQQKVDDIPVITTSQINTQAFVGLGESLLIAGFTTDTQTNGVTGVPFLSRIPLL 567 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 GALFR + E TP ++ Sbjct: 568 GALFRYHSDDHSHGERVFLLTPRIID 593 >gi|34500885|gb|AAQ73913.1| HrcC [Pectobacterium carotovorum subsp. carotovorum] Length = 689 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 108/320 (33%), Gaps = 33/320 (10%) Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 S V L G + + A+ + ++ + ++++ +++ ++ V + Sbjct: 277 ASGRVTLSGKI-SADVRNNALLI--------RDDEKRRAEYQQLVEHIDVP-QNLVNIDA 326 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 I +V R + ++ + + FVS D F + Sbjct: 327 IILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADI 375 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ALE +A P++ + Q A ++ + G L TP Sbjct: 376 QALEGEGTASIVANPSVLTLENQPA--IVDFSRTAFITATGERVADIQPVTAGTSLQVTP 433 Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 V+ G I L I E + G G+ + T + +VL G ++ Sbjct: 434 RVIGEGAQRSIQLVIDIEDGQVETGRE-GEASGVKRGTVSTQALIGENRALVLGGFHVEE 492 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 IP+L IP+LG LF ++R E TP LV D + P + S Sbjct: 493 SGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSA 547 Query: 438 DDAKAF-FFNRVNKIYGPKE 456 + + NRV + G + Sbjct: 548 NRQQLNGAMNRVAQRNGKTD 567 >gi|227328511|ref|ZP_03832535.1| type III secretion protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 689 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 108/320 (33%), Gaps = 33/320 (10%) Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 S V L G + + A+ + ++ + ++++ +++ ++ V + Sbjct: 277 ASGRVTLSGKI-SADVRNNALLI--------RDDEKRRAEYQQLVEHIDVP-QNLVNIDA 326 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 I +V R + ++ + + FVS D F + Sbjct: 327 IILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADI 375 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ALE +A P++ + Q A ++ + G L TP Sbjct: 376 QALEGEGTASIVANPSVLTLENQPA--IVDFSRTAFITATGERVADIQPVTAGTSLQVTP 433 Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 V+ G I L I E + G G+ + T + +VL G ++ Sbjct: 434 RVIGEGTQRSIQLVIDIEDGQVETGRE-GEASGVKRGTVSTQALIGENRALVLGGFHVEE 492 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 IP+L IP+LG LF ++R E TP LV D + P + S Sbjct: 493 SGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSA 547 Query: 438 DDAKAF-FFNRVNKIYGPKE 456 + + NRV + G + Sbjct: 548 NRQQLNGAMNRVAQRNGKTD 567 >gi|171316796|ref|ZP_02906007.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] gi|171098054|gb|EDT42870.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] Length = 598 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 94/240 (39%), Gaps = 10/240 (4%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 +++ L++ + ++ + EV L+QIG G A FG S G Sbjct: 365 LVSQLDVR-RQLIEIEAHVIEVDETALRQIGVNWGARSKHVGLQTGGGAPFGA---STGN 420 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + ++ L+ R A P + + A + + + ++G Sbjct: 421 TLTAVVGDSGRYLMGRINLLQLENKARLDASPKVATLDNVEAIMDNRSRFFVRVSGHTSG 480 Query: 304 AT-SVTTHDYGVVLHFTPTV-LSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTV 360 SV+T G+ L P V GR +++ + + + ++P T Sbjct: 481 QLYSVST---GISLRVLPMVMNENGRQYIKLAVNIDDGQITNRTVDNIPIVNSSSIRTQA 537 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++++AG + + G+P LSKIP++GALFR S + + + TP +++ Sbjct: 538 VIGKDESLLIAGYRVEGRSEGTFGVPGLSKIPVVGALFRQSESSARKMDRIFLLTPRIIE 597 >gi|300693821|ref|YP_003749794.1| type III secretion protein [Ralstonia solanacearum PSI07] gi|299075858|emb|CBJ35167.1| Type III secretion protein [Ralstonia solanacearum PSI07] Length = 590 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 90/246 (36%), Gaps = 25/246 (10%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240 + +I E+ L+Q+G + S +G S + + G S Sbjct: 348 ISASIIEISETALEQLGVDWRLHNSRFDLQTGNSANTMLNNPGSLDSVATTAGAAAAIAA 407 Query: 241 EGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + V+ S + AL++ R A P + + A + Sbjct: 408 TPAGGVLSAVIGGSSRYLMARISALQQTNQARITANPKVATLDNTEAVMDNRQNFYVPVA 467 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + + GV L P V+ G RI + + E + G++P + Sbjct: 468 GYQ--SADLYAISAGVSLRVLPMVVMDGGTVRIRMNVHIE-DGQITSQQVGNLPVTSQSE 524 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 DT + G ++++AG D + + +P LSKIP++GALFR + + + T Sbjct: 525 IDTQALINEGESLLIAGYSVDQQAKTVDAVPGLSKIPLVGALFRTDQTTGQRFQRMFLVT 584 Query: 416 PFLVKP 421 P ++ P Sbjct: 585 PRVITP 590 >gi|167828524|ref|ZP_02459995.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 9] gi|226199138|ref|ZP_03794700.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|225928913|gb|EEH24938.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] Length = 588 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 57/303 (18%), Positives = 107/303 (35%), Gaps = 35/303 (11%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV------MNLLNIAGEDQVTLKVTI 202 G RT + S EL + ++ + L+I + ++ I Sbjct: 287 GAPRTEEASAERDELPIIQPDPMTNSVLIRDLPDRLAQYAPLIQQLDIR-PRLIEIQAHI 345 Query: 203 AEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGK-------FVSEGGDFSVKGVL 251 E+ D+L++IG S G + D+ G + G+ V Sbjct: 346 MEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQINPFFGTTTLAGNAVVNAAP 405 Query: 252 DRFS-----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 S + AL+ + ++ A P + + A + + K S Sbjct: 406 AGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKV--S 463 Query: 301 STGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 + + + GV L P ++ G RI + + + G ++P + + Sbjct: 464 GYASAELYSVSTGVSLRVLPMIVQDGSETRIKMNVHVT-DGQLTGDQVDNLPVITSSEIN 522 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T + G ++++AG D G+P LSKIP+LGALFR ++ E +P Sbjct: 523 TQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPR 582 Query: 418 LVK 420 ++ Sbjct: 583 IID 585 >gi|116620720|ref|YP_822876.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223882|gb|ABJ82591.1| type II and III secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 527 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 117/323 (36%), Gaps = 44/323 (13%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 +D + +++ A + + +++V+L V + ++ E Sbjct: 222 QDFNSVITAVQQAFAIEKVAFDTQNNSVILRDRVSKVIPARMMFEEL------------- 268 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +V +++ EV + G + T S +F Sbjct: 269 ------------MGPRAEVEIELRFLEVSLNDAVTYGVDLANTFSVIPLQNAF------N 310 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--- 294 F + + + + A ++ + L + ++ Q A+ G ++ Sbjct: 311 FAQLAKSLTSSSLFGINILSSAIVATMSNSSGKLLLSSEVRSVDNQPATLHVGDRYPVLT 370 Query: 295 ---YKTVSSSTGAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Y S + GA S T D G+ L TP V + L I +E + + G + Sbjct: 371 SGYYGPQSFTNGANAYTPPPSFTFEDLGLTLKITPAVHGTESVTLDIDSEF-KVLAGGSV 429 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P R + +L G +AGL+ D + GI +S++P+LG L N+ Sbjct: 430 NGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPVLGQLTSTHTRNK 489 Query: 406 EETEIFIAATPFLVKPVAMRDLS 428 +E+++ I P L+ P + LS Sbjct: 490 DESQVLILMRPRLLTPPPGQALS 512 >gi|330894456|gb|EGH27117.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. mori str. 301020] Length = 703 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 50/291 (17%), Positives = 103/291 (35%), Gaps = 23/291 (7%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L+++ + + I ++ R+ L ++ + + S G GG Sbjct: 307 KAMYEKLIKELDVSRNL-IEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGV 356 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LH LE + + P++ + Q Sbjct: 357 NMFDAGTTSTMFIQNAGKFTAELHTLEGNGSASVIGNPSILTLENQPGVIDFSRTEY--L 414 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S ++ G L TP L ++ L + E + I PS R Sbjct: 415 TATSERVANIEPITAGTSLQVTPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKG 474 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + +PLL IP +G LF++ E Sbjct: 475 NVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSNRERLFI 534 Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 TP L+ D P + + +++ +I ++ E+ + Sbjct: 535 LTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGGELPTRG 578 >gi|254302334|ref|ZP_04969692.1| possible outer bacterial membrane secretin family protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322526|gb|EDK87776.1| possible outer bacterial membrane secretin family protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 515 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 21/248 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV + I ++ ++ +++GF S S A GK G +V V Sbjct: 266 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAIILGKAGLNGVGSTVNIV 325 Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + T ++ LE + + PTL SG+ F + + S Sbjct: 326 RQFNNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKSHRDDKKD 385 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 386 RYSEPVFKEAGLIMKVKPIIKDNDYIILEISLELSDFKFKRNVLNLKDINSGTYNSEGGS 445 Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E +++ Sbjct: 446 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 505 Query: 411 FIAATPFL 418 +I + Sbjct: 506 YIKLKVEI 513 >gi|116074048|ref|ZP_01471310.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. RS9916] gi|116069353|gb|EAU75105.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. RS9916] Length = 670 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 8/199 (4%) Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 D G+ V G + + SF L A ++T+ +TLA PTL G+SA +G Sbjct: 450 DKNGRPVYVAGKDPREFSYPQNSFYGYLEAAIQSTSAKTLASPTLLVQEGESAKVETGTS 509 Query: 293 HLYKTVSSSTGATSVTTHD----YGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 + ++ T S + G+ L + G + L++ VS P Sbjct: 510 VITGVKATETANGSTQFENTRENAGLTLGVDIEKIDDNGFVTLKVFPSVSIPQEAGFQEG 569 Query: 348 MPSYRV--RKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P Y + R + V L T+VL G++++ ++ P+L +P+LG +FR + Sbjct: 570 VPIYNITGRSLSSGRVRLRDRQTLVLTGVIRESDIEVVRKWPILGDLPVLGQMFRKTESE 629 Query: 405 REETEIFIAATPFLVKPVA 423 RE+ E+ I TP +V A Sbjct: 630 REKQELVILVTPSIVDDEA 648 >gi|257470110|ref|ZP_05634202.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC 49185] Length = 563 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 67/351 (19%), Positives = 125/351 (35%), Gaps = 55/351 (15%) Query: 105 DGKQMLNLDI-LIERDIAHLEMTLRRFIADSNIRVEMVS--DTVVLHGMVRTIQDSQRAV 161 +G++ I L+ + L+ +S IRV + + +++ G + + R V Sbjct: 216 NGEEFYTERIKLVNISADEVSAILKNSFGES-IRVSSIPKMNIIIIVGKKDSTVSAVRLV 274 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + + + QV + I +V ++ + +GF + Sbjct: 275 KELDKEI-------------------------QQVRITSQILDVTDNLFENLGFDWLYSN 309 Query: 222 SSS-----GPSKSFAADFG--GKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTL 272 S S G S G VS G ++ + + ++ L+ + Sbjct: 310 SGSIEKNKGLDISLIGKAAVEGAGVSFGSGINLIRQFNDGNDILGLGINLLQATQDLVIS 369 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFTPTVLSPGR 327 A P++ G+ F + + T T + G++L P + G Sbjct: 370 AMPSILVADGEEGEFKITEEVIVGEEKKENDNTEKTTYTPLFREAGIILKVKPLIKENGI 429 Query: 328 IGLRIQTEVSE------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 I L++ EVS G + S R +TTV++ G TI + GL + Sbjct: 430 IFLKVMIEVSNFRLKKSEQENISSDGGTYNSEGGSKIGRSIETTVKMKDGETIFIGGLKR 489 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +Q L IP L +P++ F+N RE T+I+I + K +D Sbjct: 490 AVVQNLDSRIPFLGTLPVINIFFKNQSVKREITDIYIKLKVDIEKDSWEKD 540 >gi|12331294|emb|CAC24709.1| putative HrcS protein [Pseudomonas fluorescens] Length = 674 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 117/345 (33%), Gaps = 33/345 (9%) Query: 83 SPRTMYLFGKNVG--QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI--ADSNIRV 138 ++ L G ++++ +G G NLD D L+ L R + Sbjct: 195 DTTSLKLLSGAAGDNRSSLTGLGAAG-LPYNLD-ASGIDTGALQQGLDRVLHYGSKKPGK 252 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + ++ +L E + +K++ L++ + + Sbjct: 253 GQAGGRASIRVSADVRNNAVLIYDLPER-----------KALYEKLVKQLDVPRNL-IEI 300 Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 I ++ R+ L ++ + + S +F+ GG + + G S + + F Sbjct: 301 DAVILDIDRNELAELASRWNFN------SGNFS---GGANLFDAGASSTLFLQNAGKFSA 351 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 L ALE + + P++ + Q A ++S A ++ G L Sbjct: 352 QLRALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--LTATSERAANILPITAGTSLQV 409 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P L +I + + E + + PS R T + G++V+ G Sbjct: 410 IPRSLDHDGKPQIQMIVDIEDGQIDVSTINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHG 469 Query: 376 DDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419 + IPLL IP +G LF++ + TP L+ Sbjct: 470 LEANDRIHKIPLLGDIPYIGKLLFQSHNRELSQRGRLFILTPRLI 514 >gi|166363715|ref|YP_001655988.1| type IV pilus assembly protein [Microcystis aeruginosa NIES-843] gi|166086088|dbj|BAG00796.1| type IV pilus assembly protein [Microcystis aeruginosa NIES-843] Length = 701 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 18/204 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310 F L A + + L +P+L GQ A+ + L + + V T Sbjct: 490 FLMTLQASIQTGNAKILTDPSLVVQEGQQATVKLTQKVLESVQTEVDPLSGVRTITPVLA 549 Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVI-------GVNAGDMPSYRVRKADTT--V 360 D G+ L V G I L + V+ P G+N+G+ + +R+ T+ V Sbjct: 550 DAGLTLAVNVDQVDDNGFISLSVSPTVASPGTPIEFNSGGINSGNTLTPLIRRELTSGLV 609 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G +++L+G++++ Q + +P+L IPILGALFR+ +E+ I TP +++ Sbjct: 610 RLRDGQSLILSGIIQETQQSSETKVPILGDIPILGALFRSRTNQNNRSEVIILLTPKIIE 669 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFF 444 A L +Y DA Sbjct: 670 DTATSTL---GINYQPGQDAAEML 690 >gi|33866866|ref|NP_898425.1| general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 8102] gi|33639467|emb|CAE08851.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 8102] Length = 344 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 88/175 (50%), Gaps = 8/175 (4%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----H 310 SF + + A+ ++++ +TLA+PTL G++A +G + ++ T S Sbjct: 145 SFYSYVEAMIQSSSAKTLAQPTLLVQEGETAMVETGQSVITGVSATETANGSTQFQNTRE 204 Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT-TVELPSGG 366 + G+ + + G I L ++ E+S P+ + + + RK ++ ++ L G Sbjct: 205 NAGLTVDLSVSKIDDNGFISLELKPEISVPIPAGTQEGVGIFNIQARKLESGSIRLRDGQ 264 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +++L G++ D +Q P+L +P++G LFR S +RE+ E+ I TP ++ Sbjct: 265 SLILTGVITDSDRQQVRKWPILGDMPLIGQLFRQSSSSREKNELVIIVTPTILDD 319 >gi|183600572|ref|ZP_02962065.1| hypothetical protein PROSTU_04158 [Providencia stuartii ATCC 25827] gi|188019849|gb|EDU57889.1| hypothetical protein PROSTU_04158 [Providencia stuartii ATCC 25827] Length = 562 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 101/263 (38%), Gaps = 22/263 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++ L+ QV L + I ++ R L +G + ++G + Sbjct: 297 RQLVRTLDTR-RRQVELSLWIIDITRSELDNLGVNWEVGTINTGNT-------------- 341 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 F+ + + F + AL ++ ++ P L A F + K Sbjct: 342 AFSFNRSTLSNSTDFLLRVDALSKSGNGHIVSRPVLLTQENIPALFDNNTSFYAKL--QG 399 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKA 356 ++ YG ++ P + S ++ + + E S+ N +PS Sbjct: 400 ERIATLEQVTYGTMVSVMPRISSGHQVEMEVNIEDGGEKQSKSGEVSNVEGLPSVNRTTI 459 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +T + ++++ G ++ + + + IPLL IP++G LF ++ N+++ P Sbjct: 460 NTVARIAQNSSLLIGGYTREQVVENESHIPLLGDIPLIGGLFSHTSVNKQKMVRLFLIQP 519 Query: 417 FLVKPVAMRDLSRPDDHYSVEDD 439 L+ + D + ++ +++ Sbjct: 520 RLLDENEVWDGRQFSENQRIKEQ 542 >gi|253688577|ref|YP_003017767.1| type III secretion outer membrane pore, YscC/HrcC family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755155|gb|ACT13231.1| type III secretion outer membrane pore, YscC/HrcC family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 689 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 109/320 (34%), Gaps = 33/320 (10%) Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 S V L G + + A+ + ++ + +++++ +++ ++ V + Sbjct: 277 ASSRVTLSGKI-SADVRNNALLI--------RDDEKRRAEYQQLVDHIDVP-QNLVNIDA 326 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 I +V R L ++ + + FVS D F + Sbjct: 327 IILDVDRTALSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADI 375 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ALE +A P++ + Q A ++ + G L TP Sbjct: 376 QALEGEGTASIVANPSVLTLENQPA--IVDFSRTAFITATGERVADIQPVTAGTSLQVTP 433 Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 V+ G I L I E + G G+ + T + +VL G ++ Sbjct: 434 RVVGEGAQRSIQLVIDIEDGQVETGRE-GEASGVKRGTVSTQALIGENRALVLGGFHVEE 492 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 IP+L IP+LG LF ++R E TP LV D + P + S Sbjct: 493 SGDRDRRIPILGDIPLLGKLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSA 547 Query: 438 DDAKAF-FFNRVNKIYGPKE 456 + + NRV + G + Sbjct: 548 NRQQLNGAMNRVAQRNGKTD 567 >gi|146298381|ref|YP_001192972.1| type II and III secretion system protein [Flavobacterium johnsoniae UW101] gi|146152799|gb|ABQ03653.1| GspD-like type II secretion system secretin protein [Flavobacterium johnsoniae UW101] Length = 634 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 59/307 (19%), Positives = 113/307 (36%), Gaps = 23/307 (7%) Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 I++E S +VL + + + E E + ++ K + ++ Sbjct: 329 EVIQLENRSIELVLPSLPKVFSEKLEIKEFVELNGLVASGSKSILEELKLYIKQIDKIVP 388 Query: 194 DQVTLKVTIAEVRRDILKQI-------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 V ++V IA+ + Q +TG + P+ + S F+ Sbjct: 389 -MVQIEVIIAQYNKSHDVQTGMKAGLDKINKQVTGGTVFPTTDMTVN-STSVNSLIDAFN 446 Query: 247 VKGVLDRF----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G+ +F L LE + ++ + P + ISG A + G Y S+ Sbjct: 447 GFGIFKLGKVTEAFYLNLKLLENNSIVKVESTPKIATISGHEAKLSIGETSYYFEQSNRL 506 Query: 303 GATSV----------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 +++ + D + L P V + L I E S + P Sbjct: 507 INSNIGNDILNSGTWKSTDANLSLSIKPYVSIDENVTLTIVVEKSSFLGRAGETAPPGKA 566 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 +K ++ V + +G I+L GL + + G PLLS+IPI+ F + + + +++ I Sbjct: 567 TQKFESLVRVKNGEMILLGGLDELKKEDSGSGTPLLSRIPIIKWFFSSRKKGKNNSKLHI 626 Query: 413 AATPFLV 419 P +V Sbjct: 627 FIKPTVV 633 >gi|161502058|ref|YP_001569170.1| hypothetical protein SARI_00075 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863405|gb|ABX20028.1| hypothetical protein SARI_00075 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 563 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 98/260 (37%), Gaps = 25/260 (9%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ L++A + V L + I ++ + L+++G S + G + Sbjct: 294 LVKALDVA-KRHVELSLWIVDLNKSDLERLGASWS------------GSITIGDKLGVSL 340 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + S LD F ++ALE ++ P L A F + K + Sbjct: 341 NQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNV 400 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-----IGVNAGDMPSYRVRKADT 358 A T YG ++ P + G+I + + E I + +P T Sbjct: 401 ALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDTTPQTEITASVDALPEVGRTLIST 458 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +P G ++++ G +D + IP L KIP +G LFR S N+ FL Sbjct: 459 IARVPHGKSLLVGGYTRDANTDTVQSIPFLGKIPFIGGLFRYSSKNKSN-----VVRVFL 513 Query: 419 VKPVAMRDLSRPDDHYSVED 438 ++P + D PD SV + Sbjct: 514 IEPKEIVDPLTPDASESVNN 533 >gi|192384691|dbj|BAG49616.1| HrcC [Pseudomonas viridiflava] Length = 671 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 92/271 (33%), Gaps = 24/271 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + I ++ R L + + S S +FG ++ G DR Sbjct: 300 VEIDAVILDIDRSQLSSLESRWSARAGS--------VNFGSSLLTGGSSTLFINDFDR-- 349 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + ALE +A P++ + Q A T +V G Sbjct: 350 FFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERV--ANVQPVTAGTS 407 Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P ++ R L + E + D P + T + ++V+ G Sbjct: 408 LRVIPRTIAGEQPNRFQLIVDIE-DGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGG 466 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 D+ + ++ +P+L +P++GALF + R E TP LV D P Sbjct: 467 FHVDESGERQDKVPILGSLPVIGALFTSKRHEVSRRERLFILTPRLV-----GDQLDPSR 521 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 + + E+ + +R + G + + Sbjct: 522 YIARENRPQ---LDRALALSGSPSTRQQKRD 549 >gi|51103060|gb|AAT96206.1| HrcC [Pseudomonas viridiflava] Length = 697 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 88/246 (35%), Gaps = 20/246 (8%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L++ + + I ++ R+ L ++ + + GG Sbjct: 305 KAMYEKLIKELDVPRNL-IEIDAVILDIDRNELAELASRWNFKS-------------GGV 350 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LHALE + + P++ + Q A Sbjct: 351 NMFDAGTTSTLFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI-- 408 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S ++ G L P L ++ L + E + + D PS R Sbjct: 409 TATSERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDVSDINADQPSVRKG 468 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + IPLL IP +G LF++ E Sbjct: 469 NVSTQAVIAEHGSLVVGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSREINHRERLFI 528 Query: 414 ATPFLV 419 TP L+ Sbjct: 529 LTPRLI 534 >gi|51103213|gb|AAT96354.1| hrcC [Pseudomonas viridiflava] Length = 671 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 92/271 (33%), Gaps = 24/271 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + I ++ R L + + S S +FG ++ G DR Sbjct: 300 VEIDAVILDIDRSQLSSLESRWSARAGS--------VNFGSSLLTGGSSTLFINDFDR-- 349 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + ALE +A P++ + Q A T +V G Sbjct: 350 FFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITTTGERV--ANVQPVTAGTS 407 Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P ++ R L + E + D P + T + ++V+ G Sbjct: 408 LRVIPRTIAGEQPNRFQLIVDIE-DGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGG 466 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432 D+ + ++ +P+L +P++GALF + R E TP LV D P Sbjct: 467 FHVDESGERQDKVPILGSLPVIGALFTSKRHEVSRRERLFILTPRLV-----GDQLDPSR 521 Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 + + E+ + +R + G + + Sbjct: 522 YIARENRPQ---LDRALALSGSPSTRQQKRD 549 >gi|256846641|ref|ZP_05552097.1| general secretion pathway protein D [Fusobacterium sp. 3_1_36A2] gi|256717861|gb|EEU31418.1| general secretion pathway protein D [Fusobacterium sp. 3_1_36A2] Length = 515 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 21/248 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV + I ++ ++ +++GF S S A GK G +V V Sbjct: 266 NPKQVKITSQILDISNNLFEELGFNWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIV 325 Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + ++ LE + + PTL SG+ F + + + Sbjct: 326 RQFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 385 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 386 RYSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 445 Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E +++ Sbjct: 446 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 505 Query: 411 FIAATPFL 418 +I + Sbjct: 506 YIKLKVEI 513 >gi|317064333|ref|ZP_07928818.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC 49185] gi|313690009|gb|EFS26844.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC 49185] Length = 451 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 67/351 (19%), Positives = 125/351 (35%), Gaps = 55/351 (15%) Query: 105 DGKQMLNLDI-LIERDIAHLEMTLRRFIADSNIRVEMVS--DTVVLHGMVRTIQDSQRAV 161 +G++ I L+ + L+ +S IRV + + +++ G + + R V Sbjct: 104 NGEEFYTERIKLVNISADEVSAILKNSFGES-IRVSSIPKMNIIIIVGKKDSTVSAVRLV 162 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + + + QV + I +V ++ + +GF + Sbjct: 163 KELDKEI-------------------------QQVRITSQILDVTDNLFENLGFDWLYSN 197 Query: 222 SSS-------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTL 272 S S S A G VS G ++ + + ++ L+ + Sbjct: 198 SGSIEKNKGLDISLIGKAAVEGAGVSFGSGINLIRQFNDGNDILGLGINLLQATQDLVIS 257 Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFTPTVLSPGR 327 A P++ G+ F + + T T + G++L P + G Sbjct: 258 AMPSILVADGEEGEFKITEEVIVGEEKKENDNTEKTTYTPLFREAGIILKVKPLIKENGI 317 Query: 328 IGLRIQTEVSE------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 I L++ EVS G + S R +TTV++ G TI + GL + Sbjct: 318 IFLKVMIEVSNFRLKKSEQENISSDGGTYNSEGGSKIGRSIETTVKMKDGETIFIGGLKR 377 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 +Q L IP L +P++ F+N RE T+I+I + K +D Sbjct: 378 AVVQNLDSRIPFLGTLPVINIFFKNQSVKREITDIYIKLKVDIEKDSWEKD 428 >gi|82795284|gb|ABB91653.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. tagetis] Length = 699 Score = 127 bits (318), Expect = 6e-27, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 89/246 (36%), Gaps = 16/246 (6%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L++ + + I ++ R+ L ++ + + + GG Sbjct: 303 KAMYEKLVKELDVPRNL-IEIDAVILDIDRNELAELSSRWNFNAGNVS---------GGA 352 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LHALE + + P++ + Q A Sbjct: 353 SLFDAGTSSTMFIQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEY--L 410 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S A + G L P L ++ + + E + + PS R Sbjct: 411 TATSERAAEILPITAGTSLQVIPRSLDHDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRG 470 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + IPLL IP +G LF++ + E Sbjct: 471 NVSTQAVIAEHGSLVVGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFI 530 Query: 414 ATPFLV 419 TP L+ Sbjct: 531 LTPRLI 536 >gi|238918877|ref|YP_002932391.1| type III secretion outer membrane pore, YscC/HrcC family, [Edwardsiella ictaluri 93-146] gi|84663086|gb|ABC60068.1| EsaC [Edwardsiella ictaluri 93-146] gi|238868445|gb|ACR68156.1| type III secretion outer membrane pore, YscC/HrcC family, putative [Edwardsiella ictaluri 93-146] Length = 494 Score = 127 bits (318), Expect = 6e-27, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 11/213 (5%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + VTI +V + Q+G S + G SF + GG+ S+ + + S Sbjct: 272 IEISVTIIDVDAGDINQLGIDWSASARIGGGQVSF--NNGGRLNSDSFSSLIS---NSGS 326 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L ALE+ + + ++ P++ + A + T SS + G + Sbjct: 327 FMVRLSALEQQSKAKIVSRPSVVTLDNVQAVLD--RSITFYTKLSSEKNPKLEAITSGAL 384 Query: 316 LHFTPTV---LSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLA 371 + TP + ++ L + E ++ +P + + T L G ++L Sbjct: 385 MRVTPRLIRENGGNKVLLILNIEDGRQGAPLSQTESLPQVQNAEIATQATLNLGQALLLG 444 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 G ++++ Q IPLL +P++G LFR++ N Sbjct: 445 GFVQNENTQGVRKIPLLGDLPLIGGLFRSTDRN 477 >gi|205353841|ref|YP_002227642.1| virulence associated secretory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273622|emb|CAR38609.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628950|gb|EGE35293.1| Protein invG [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 562 Score = 127 bits (318), Expect = 6e-27, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 107/301 (35%), Gaps = 30/301 (9%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTI 202 GM Q A + ++ N + + +N + + + V L + I Sbjct: 251 GMSLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVNFIEMLVKALDVAKRHVELSLWI 310 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 ++ + L+++G S + G + + S LD F ++A Sbjct: 311 VDLNKSDLERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNA 358 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322 LE ++ P L A F + K + A T YG ++ P Sbjct: 359 LEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVT--YGTMIRVLPRF 416 Query: 323 LSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + G+I + + E + +P T +P G ++++ G +D Sbjct: 417 SADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDA 476 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 + IP L K+P++G+LFR S N+ F+++P + D PD SV Sbjct: 477 NTDTVQSIPFLGKLPLIGSLFRYSSKNKSN-----VVRVFMIEPKEIVDPLTPDASESVN 531 Query: 438 D 438 + Sbjct: 532 N 532 >gi|281356803|ref|ZP_06243294.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316930|gb|EFB00953.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 850 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 55/324 (16%), Positives = 101/324 (31%), Gaps = 86/324 (26%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------TGSSSGPSKSFAADF 234 +++ L+ + + +++ EV + L+++GF S+ T +S + Sbjct: 507 DELIRQLDAIEKPLIMVEIKGIEVSEEDLQELGFDWSMSAIGSVKTDASGNMVSGWLFGQ 566 Query: 235 GGK--------------------------FVSEGGDFSVKGVLDRFSFETVLHALERATA 268 GG F S G+ G + ++AL R T Sbjct: 567 GGGQSNPATRTVREGITGVNTALIDGWNFFPSLFGNVHPFGSDVPLNISLTINALSRNTR 626 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKT------VSSSTGATSVT--------THDYGV 314 TLA P + + + AS + + + G ++T D G+ Sbjct: 627 TETLAAPKVMTSNDRMASVRMVKSYQFPEDWDAYEIEDDDGNYTITAPVPSFGDETDIGI 686 Query: 315 VLHFTPTVLSPGR-IGLRIQTEVSE-----------------------PVIGVNAGDM-- 348 + TP V + I L + V+ P G G Sbjct: 687 IFDVTPKVNADNYTITLEVNPTVTNYIGRDEYNIQVKGILTEYVRATDPSTGAFTGGTTL 746 Query: 349 -------------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 P R V + G TI+L G++ + P+L +P++G Sbjct: 747 KQTKTTDRFNVWKPIISRRNVKVNVNVYDGETIILGGMIDATTTTRTDKWPILGDLPLVG 806 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 F++ N + + T LV Sbjct: 807 RFFQSQSENITRNNLLLFVTTRLV 830 >gi|218988958|gb|ACL13621.1| invasion protein InvG [Salmonella enterica subsp. salamae serovar Sofia] Length = 562 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 117/327 (35%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQTDTTTSVDALPEV 450 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L KIP +G+LFR S N+ Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKIPFIGSLFRYSSKNKSN---- 506 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532 >gi|213425700|ref|ZP_03358450.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 505 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 117/327 (35%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT L G V I+ +A+++++ Sbjct: 196 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 246 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 247 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 275 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 276 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 335 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 336 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 393 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP+L K+P++G+LFR S N+ Sbjct: 394 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN---- 449 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 450 -VVRVFMIEPKEIVDPLTPDASESVNN 475 >gi|32471479|ref|NP_864472.1| general secretion pathway protein D [precursor] [Rhodopirellula baltica SH 1] gi|32443320|emb|CAD72153.1| general secretion pathway protein D [Precursor] [Rhodopirellula baltica SH 1] Length = 1265 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 106/323 (32%), Gaps = 64/323 (19%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 AV ++T + +++++ L+ V +K IAEV+ D +IG + + Sbjct: 730 AVAEAQTNSVLLSVSPRIYEEVRQLIDRLDRR-PPMVLIKTLIAEVQLDDGFEIGGEFGL 788 Query: 220 TGS-------------SSGPSKSFAADFGGKFVSEGGDFSVKG----------------- 249 S + P+ +FGG V+ S Sbjct: 789 QDSLLFDRGKATGAIATGNPASDPGFNFGGTSVNLPNANSFGQENLASKGITSFGAGASQ 848 Query: 250 --------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 S L L A ++ L+ P + G Sbjct: 849 LTQLSGLNSGGFVFSAASESVNLFLRTLRVANRLQILSRPEIMTADNTEGFVQVGQSFPR 908 Query: 296 KTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA- 345 T S TG T + + G++L TP V + G I + I S+ Sbjct: 909 PTELSFTGGTGGTASQPIIGIEDEEIGIILRVTPRVGADGMIFMAIDASRSDINNNEGQI 968 Query: 346 ---------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 +P+ +A T+ G T+V GL++ Q +P LS IP++G Sbjct: 969 IGAFQDDVPIFVPAIDRTQAQATITAFDGQTVVFGGLIQKVRQNRTRRVPYLSNIPVVGT 1028 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 F+ + +E+ + TP LV Sbjct: 1029 FFKFDSEIEQRSELLVVMTPILV 1051 >gi|34498087|ref|NP_902302.1| invasion protein - outer membrane [Chromobacterium violaceum ATCC 12472] gi|34103942|gb|AAQ60302.1| invasion protein - outer membrane [Chromobacterium violaceum ATCC 12472] Length = 561 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 63/337 (18%), Positives = 119/337 (35%), Gaps = 62/337 (18%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L L+R A +I+V DT +++ G VR I++ RA+++++ Sbjct: 253 SLPEALKRDAAAGDIKVIAYPDTNSLLVKGTAEQVRFIENLARALDVAKRH--------- 303 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++++D L Q+G S + G Sbjct: 304 -------------------VELSLWIIDLQKDDLDQLGVNWS--------GSVTVGNKLG 336 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +++ G S LD F + A+ ++ P + A F + K Sbjct: 337 VTLNQAGSLS---TLDGTRFLAAVMAMTSKKKANVVSRPVVLTQENIPAIFDNNRTFYAK 393 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPS 350 + + YG ++ P + G+I + + E +P Sbjct: 394 L--EGERSVDLQHVTYGTLISVLPRFAADGQIEMSLSIEDGSQARAPDYSSDNKDAGLPE 451 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + T +P G ++++ G +D ++ + +PLL +P++G LFR + T Sbjct: 452 VGRTRISTVARVPQGKSLLIGGFTRDASERGEGKVPLLGDLPLVGGLFRYQSAKQTNT-- 509 Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 FL++P + D PD D A R Sbjct: 510 ---VRVFLIQPREIDDALTPD-----ASDLSADLVRR 538 >gi|51103005|gb|AAT96152.1| HrcC [Pseudomonas viridiflava] Length = 697 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 88/246 (35%), Gaps = 20/246 (8%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L++ + + I ++ R+ L ++ + + GG Sbjct: 305 KAMYEKLIKELDVPRNL-IEIDAVILDIDRNELAELASRWNFKS-------------GGV 350 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + G S + + F LHALE + + P++ + Q A Sbjct: 351 NMFDAGTTSTLFIQNAGKFSAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYI-- 408 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++S ++ G L P L ++ L + E + + D PS R Sbjct: 409 TATSERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDGQIDVSDINADQPSVRKG 468 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + IPLL IP +G LF++ E Sbjct: 469 NVSTQAVIAEHGSLVVGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSREINHRERLFI 528 Query: 414 ATPFLV 419 TP L+ Sbjct: 529 LTPRLI 534 >gi|296328369|ref|ZP_06870896.1| general secretion pathway protein D [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154548|gb|EFG95338.1| general secretion pathway protein D [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 515 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 93/248 (37%), Gaps = 21/248 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV + I ++ ++ +++GF S S A GK G +V V Sbjct: 266 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIV 325 Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + T ++ LE + + PTL SG+ F + + + Sbjct: 326 RQFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 385 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 386 RYSEPVFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 445 Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E +++ Sbjct: 446 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 505 Query: 411 FIAATPFL 418 +I + Sbjct: 506 YIKLKVEI 513 >gi|16761675|ref|NP_457292.1| virulence associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143159|ref|NP_806501.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052440|ref|ZP_03345318.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213612699|ref|ZP_03370525.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|25512784|pir||AF0852 secretory protein (associated with virulence) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503976|emb|CAD06005.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138792|gb|AAO70361.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 562 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 117/327 (35%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT L G V I+ +A+++++ Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 303 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP+L K+P++G+LFR S N+ Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN---- 506 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532 >gi|332711134|ref|ZP_08431068.1| type II secretory pathway, component HofQ [Lyngbya majuscula 3L] gi|332350116|gb|EGJ29722.1| type II secretory pathway, component HofQ [Lyngbya majuscula 3L] Length = 810 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 16/219 (7%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTA 279 G ++ P + D + +FS+ + + F L A ++ + L +PTL Sbjct: 563 GRNNNPFQPGVTDVQRQDDGNEFEFSLPSLFEYPDKFLLTLQAQITSSNAKILTDPTLVI 622 Query: 280 ISGQSASFTSGGQHLYKTVSS-------STGATSVTTHDYGVVLHF-TPTVLSPGRIGLR 331 GQ AS + L + +T + + G+ L + G I L Sbjct: 623 QEGQEASVKLVQEVLTSVTTDIDLDGGVATRTITPVIEEAGLTLTVNVDRIDDNGFITLS 682 Query: 332 IQTEVSEPVIGV-----NAGDMPSYRVRKADTT--VELPSGGTIVLAGLLKDDIQQLKEG 384 ++ P NA + ++ R+ ++ V L G T++L+G+++D + Sbjct: 683 TSPVITAPSGTQEFNSDNAQNEITFLSRRELSSGLVRLRDGQTLILSGIIQDTDRTTVSK 742 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +P+L IP+LGALFR++ + +E+ I TP ++ Sbjct: 743 VPILGDIPLLGALFRSTNKQNQRSEVIILVTPQIMDDTD 781 >gi|167573369|ref|ZP_02366243.1| type II/III secretion system protein [Burkholderia oklahomensis C6786] Length = 607 Score = 126 bits (317), Expect = 8e-27, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 33/241 (13%) Query: 210 LKQIGFQH-------------SITGSSSGPSKSFAADFGGKFVSEGGD----------FS 246 LKQ+G +T +S + S FG +S GD S Sbjct: 371 LKQLGVDWRAHNSHIDLQTGTGLTAQNSYANGSLNPTFGSISLSGNGDSVGVPASPLGLS 430 Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTG 303 + VL ++ALE + RT A P +T + A + Q + +S Sbjct: 431 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 490 Query: 304 ATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 S++T GV L P V+ G +I L ++ V + ++P + +T Sbjct: 491 LYSIST---GVSLRVLPMVVEEGGHTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQA 546 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G +++AG D G+P+LSK+P++GALFR++ TE TP +++ Sbjct: 547 FIEQGQALLIAGYKVDSRSSTLSGVPVLSKLPLVGALFRSTDKQDSHTERLFLVTPRVIE 606 Query: 421 P 421 P Sbjct: 607 P 607 >gi|161520290|ref|YP_001583717.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia multivorans ATCC 17616] gi|189353532|ref|YP_001949159.1| putative type II secretory pathway [Burkholderia multivorans ATCC 17616] gi|160344340|gb|ABX17425.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans ATCC 17616] gi|189337554|dbj|BAG46623.1| putative type II secretory pathway [Burkholderia multivorans ATCC 17616] Length = 678 Score = 126 bits (317), Expect = 8e-27, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 107/314 (34%), Gaps = 47/314 (14%) Query: 196 VTLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPSKSFAADFGG 236 V + VTI ++ D L +G T + + G Sbjct: 337 VEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTFGIGA 396 Query: 237 KFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAEPTLTAISGQSASFT 288 + G F G+ S L +AL + + ++P + A+ A Sbjct: 397 SESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTEAILE 456 Query: 289 SGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTE 335 + Q + + SVTT G + TP ++ + + I + Sbjct: 457 NLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDDAIRNAAAVSGRPESVMMSIDIQ 513 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V G ++P + R T + G ++++AG D+++ K G+P LS IP++G Sbjct: 514 DGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIG 573 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDDAKAFFFNR--VNKI 451 LF+ + + E F TP +V +M D S + D R N I Sbjct: 574 NLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPDNDI 633 Query: 452 YGPKEASEVEGQNY 465 P + G + Sbjct: 634 AVPLTPRPLPGTKF 647 >gi|76574829|gb|ABA47303.1| HrcC [Pseudomonas cichorii] Length = 672 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 85/227 (37%), Gaps = 16/227 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + I ++ R L + + S S +FG ++ G + + D Sbjct: 301 VEIDAIILDIDRTQLSALESRWSARAGS--------VNFGSSLLTGGS--ATLSINDFDR 350 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + ALE +A P++ + Q A + Y T + A V + G Sbjct: 351 FFADIQALEGQGVASVIARPSVLTLENQPAVIDF-SRTAYITATGERVAN-VQSVTAGTS 408 Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P ++ R L I E + + G+ P + T + ++V+ G Sbjct: 409 LQVIPRTIAGAQPSRFQLIIDIEDGQLDRSRD-GETPDVKRGTVSTQAVISENRSLVIGG 467 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 D+ Q + +PLL +P+LG+LF + R E TP L+ Sbjct: 468 FHVDETGQHHDKVPLLGDLPVLGSLFTSKRQEVSRRERLFILTPRLI 514 >gi|221200554|ref|ZP_03573596.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD2M] gi|221206234|ref|ZP_03579248.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD2] gi|221174246|gb|EEE06679.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD2] gi|221179895|gb|EEE12300.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD2M] Length = 678 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 107/314 (34%), Gaps = 47/314 (14%) Query: 196 VTLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPSKSFAADFGG 236 V + VTI ++ D L +G T + + G Sbjct: 337 VEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTFGIGA 396 Query: 237 KFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAEPTLTAISGQSASFT 288 + G F G+ S L +AL + + ++P + A+ A Sbjct: 397 SESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTEAILE 456 Query: 289 SGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTE 335 + Q + + SVTT G + TP ++ + + I + Sbjct: 457 NLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDDAIRNAAAVSGRPESVMMSIDIQ 513 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V G ++P + R T + G ++++AG D+++ K G+P LS IP++G Sbjct: 514 DGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIG 573 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDDAKAFFFNR--VNKI 451 LF+ + + E F TP +V +M D S + D R N I Sbjct: 574 NLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPDNDI 633 Query: 452 YGPKEASEVEGQNY 465 P + G + Sbjct: 634 AVPLTPRPLPGTKF 647 >gi|221209590|ref|ZP_03582571.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD1] gi|221170278|gb|EEE02744.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia multivorans CGD1] Length = 678 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 107/314 (34%), Gaps = 47/314 (14%) Query: 196 VTLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPSKSFAADFGG 236 V + VTI ++ D L +G T + + G Sbjct: 337 VEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTFGIGA 396 Query: 237 KFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAEPTLTAISGQSASFT 288 + G F G+ S L +AL + + ++P + A+ A Sbjct: 397 SESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTEAILE 456 Query: 289 SGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTE 335 + Q + + SVTT G + TP ++ + + I + Sbjct: 457 NLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDDAIRNAAAVSGRPESVMMSIDIQ 513 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V G ++P + R T + G ++++AG D+++ K G+P LS IP++G Sbjct: 514 DGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIG 573 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDDAKAFFFNR--VNKI 451 LF+ + + E F TP +V +M D S + D R N I Sbjct: 574 NLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPDNDI 633 Query: 452 YGPKEASEVEGQNY 465 P + G + Sbjct: 634 AVPLTPRPLPGTKF 647 >gi|269138220|ref|YP_003294920.1| Type II secretory pathway, component PulD like protein [Edwardsiella tarda EIB202] gi|55981981|gb|AAV69411.1| EsaC [Edwardsiella tarda] gi|61743031|gb|AAX55251.1| EsaC [Edwardsiella tarda] gi|267983880|gb|ACY83709.1| Type II secretory pathway, component PulD like protein [Edwardsiella tarda EIB202] gi|304558263|gb|ADM40927.1| EsaC [Edwardsiella tarda FL6-60] Length = 494 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 85/213 (39%), Gaps = 11/213 (5%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + VTI +V + ++G S + G SF G D + + S Sbjct: 272 IEISVTIIDVDAGDINELGIDWSASARIGGGQVSFNNSGGLN-----ADSFSSLIANSGS 326 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L ALE+ + + ++ P++ + A + T S + G + Sbjct: 327 FMVRLSALEQQSKAKIVSRPSVVTLDNVQAVLD--RSITFYTKLRSEKNPKLEAITAGAL 384 Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLA 371 + TP ++ +I L + E ++ A +P + + T L G ++L Sbjct: 385 MRVTPRLIRERGGNKILLILNIEDGRQGAPLSQAESLPQVQNAEIATQATLNLGQALLLG 444 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 G ++++ Q IPLL IP++G LFR++ Sbjct: 445 GFVQNENTQGVRKIPLLGDIPLIGGLFRSTDSK 477 >gi|159028225|emb|CAO88035.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 518 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 19/205 (9%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------STGATSVT 308 F L A + + L +P+L GQ A + L ++ + T+ Sbjct: 306 FLMTLQASIQTGNAKILTDPSLVVQEGQQAVVKLTEKVLVSVETTIDTNSNGNVRTTTPV 365 Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADT-T 359 D G+ L + G I L + +++P G + R+ + Sbjct: 366 FGDAGLTLTVDVNQIDDNGYISLNVAPTIAQPGPQIPFNSGGATINQLTPLITRELLSGL 425 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G +++L+G++++ Q + +P+L IPILGALFR+ +E+ I TP ++ Sbjct: 426 IRLRDGQSLILSGIIQERQQSSETKVPILGDIPILGALFRSRTNQNSRSEVIILLTPKII 485 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFF 444 + A L +Y DA Sbjct: 486 EDSATSTL---GINYQPGQDAAEVL 507 >gi|289804655|ref|ZP_06535284.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 465 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 117/327 (35%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT L G V I+ +A+++++ Sbjct: 156 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 206 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 207 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 235 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 236 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 295 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 296 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 353 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP+L K+P++G+LFR S N+ Sbjct: 354 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN---- 409 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 410 -VVRVFMIEPKEIVDPLTPDASESVNN 435 >gi|171909982|ref|ZP_02925452.1| general secretion pathway protein D [Verrucomicrobium spinosum DSM 4136] Length = 632 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 93/261 (35%), Gaps = 25/261 (9%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 ++ S+ F + V D + ++HALE+ + + PT+ Sbjct: 312 NYDNASTSEGFKTTASSSEHNSLYQDGPGLVFDAMQVQAIVHALEQNGIVSQESCPTIIT 371 Query: 280 ISGQSASFTSGGQHLYKT--VSSSTGATSVT--------------------THDYGVVLH 317 + + + T VS + ++T + + GV L Sbjct: 372 EDNEQGIISIVDRFPIVTTNVSQTDAGQTITDEVRYKVDKDDPDAMEEPDKSREIGVTLT 431 Query: 318 FTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 TPT+L G + ++++ V++ V G N P AD +P+G +++L G Sbjct: 432 VTPTMLPDGTVRMKLRPRVAKIVELVQGNNGNVYPRVSESTADAISRIPAGQSLILGGFY 491 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434 K +P+L +P+L LFR E+ + TP ++ + R ++ Sbjct: 492 DYSSSNNKNKVPVLGNVPVLKHLFRYKEKTMEKVSLVFIITPSAYDAGSVPSIQRVNEEV 551 Query: 435 SVEDDAKAFFFNRVNKIYGPK 455 + +++ P Sbjct: 552 RAYSGMERPQLEEMSRRLEPS 572 >gi|257142080|ref|ZP_05590342.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 598 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 13/226 (5%) Query: 205 VRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETV 259 V + Q+S + P S S A + + S+ VL Sbjct: 377 VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 436 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 437 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 493 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P V+ G +I L ++ V + ++P + +T + G +++AG Sbjct: 494 LPMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKV 552 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P+LGALFR++ +E TP +++P Sbjct: 553 DARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 598 >gi|83717709|ref|YP_438974.1| type II/III secretion system protein [Burkholderia thailandensis E264] gi|83651534|gb|ABC35598.1| type II/III secretion system protein [Burkholderia thailandensis E264] Length = 605 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 13/226 (5%) Query: 205 VRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETV 259 V + Q+S + P S S A + + S+ VL Sbjct: 384 VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 443 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 444 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 500 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P V+ G +I L ++ V + ++P + +T + G +++AG Sbjct: 501 LPMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKV 559 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P+LGALFR++ +E TP +++P Sbjct: 560 DARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 605 >gi|284007665|emb|CBA73372.1| Type III secretion outermembrane pore forming protein YscC,MxiD,HrcC,InvG [Arsenophonus nasoniae] Length = 554 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 90/263 (34%), Gaps = 22/263 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +++ L+ + QV L + I ++ + ++G + S G F+ Sbjct: 289 NEMIQRLDQP-KRQVELSLWIIDIAKHEADRLGIDWQSSYHSKD----------GNFLLN 337 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 D S F + A+ + ++ P + A F + + Sbjct: 338 TSDISAAA---GIHFLAKIRAMSMEGSAHMVSRPIILTQENTPAIFDNSTTFYAQVRGER 394 Query: 302 TGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRK 355 ++ + +G ++ P + I + I E + +P Sbjct: 395 I--ATLESATFGTMISVVPRLSPTGDEIEMVINLEDGAEKKTNSGETEKIDALPVINRTN 452 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T + G ++++ G ++DI + IPLL IP +G LFR S ++ Sbjct: 453 ISTVARVAQGDSLLIGGYTREDIDSSESKIPLLGDIPWIGGLFRFSSTTNKKMVRIFMLQ 512 Query: 416 PFLVKPVAMRDLSRPDDHYSVED 438 P LVK + + S + + D Sbjct: 513 PRLVKGKNLLNDSLGKNPFKPVD 535 >gi|16766204|ref|NP_461819.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|207858160|ref|YP_002244811.1| secretory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|20141547|sp|P35672|INVG_SALTY RecName: Full=Protein invG; Flags: Precursor gi|16421446|gb|AAL21778.1| outer membrane invasion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|206709963|emb|CAR34317.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248034|emb|CBG25867.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995026|gb|ACY89911.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159457|emb|CBW18975.1| type III secretion system secretory apparatus [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913916|dbj|BAJ37890.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323131250|gb|ADX18680.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326624629|gb|EGE30974.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332989770|gb|AEF08753.1| outer membrane secretin precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 562 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 506 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532 >gi|182440996|dbj|BAG24121.1| HrcC [Pseudomonas cichorii] Length = 672 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 84/227 (37%), Gaps = 16/227 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V + I ++ R L + + S S +FG ++ G + + D Sbjct: 301 VEIDAIILDIDRTQLSALESRWSARAGS--------VNFGSSLLTGGS--ATLSISDFDR 350 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F + ALE +A P++ + Q A + Y T + A V + G Sbjct: 351 FFADIQALEGQGGASVIARPSVLTLENQPAVIDF-SRTAYITATGERVAN-VQSVTAGTS 408 Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L P ++ R L I E + + G+ P + T + ++V+ G Sbjct: 409 LQVIPRTIAGAQANRFQLIIDIEDGQLDRSRD-GETPDVKRGTVSTQAVISENRSLVIGG 467 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 D+ Q + +PLL +P+LG LF + R E TP L+ Sbjct: 468 FHVDETGQHHDKVPLLGDLPVLGPLFTSKRQEVSRRERLFILTPRLI 514 >gi|255531011|ref|YP_003091383.1| type II and III secretion system protein [Pedobacter heparinus DSM 2366] gi|255343995|gb|ACU03321.1| type II and III secretion system protein [Pedobacter heparinus DSM 2366] Length = 655 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 102/244 (41%), Gaps = 18/244 (7%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSS--------SGPSKSFAADFGGKFVSEGGDF 245 V ++VT+ ++R+ + G + + S SG + A + + G Sbjct: 410 PMVLIEVTLLDIRKGHTTKTGIEAGLADSVVRTRGTVLSGVDMTLGAGSINNLLGKIGSN 469 Query: 246 SVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----S 300 SV + +F L+ALE I P L ++G +A+ + G Y T + S Sbjct: 470 SVFNIGKVTPNFYVKLNALEANNNIEIRQVPKLATLNGHTANLSIGTTRYYVTKTQNVFS 529 Query: 301 STGATSVTTH-----DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 S +V T D + + +P V ++ L+I+ E+S+ + A P K Sbjct: 530 SVNTQTVFTEQFNKVDANLAIGISPVVSGDDQVTLKIKVEISDFIGTPPANAPPPTSTSK 589 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 ++ + + IVL G+ + + G+PLLS+IP+L +F + + + + Sbjct: 590 FESIIRAHNEDMIVLGGMERSEKSDSGSGVPLLSRIPVLKWIFSSREQTKSKVVTLVFIK 649 Query: 416 PFLV 419 P ++ Sbjct: 650 PTII 653 >gi|91203965|emb|CAJ71618.1| hypothetical protein kustc0873 [Candidatus Kuenenia stuttgartiensis] Length = 844 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 63/306 (20%), Positives = 112/306 (36%), Gaps = 36/306 (11%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSS-----SKKVMNLLNIAGEDQVTLKVTI 202 G+ R+I+ S + + Q G N++ + V+ L + QV ++ Sbjct: 514 TGVQRSIRTSGQGEGSITARMGQPGDLVVVNTTFIHKQIEDVLASLRTSQNLQVNIEARF 573 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 V + L+ IG + S + + AAD G + G D + + + + L A Sbjct: 574 ITVTDEFLEDIGTDITRFFSDNTSVSTGAADIAGD-LGSGIDLNFA-IFGNSALKGFLKA 631 Query: 263 LERATAIRTLAEPTLT---AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 ++ + L P +T G A + TV + T G Sbjct: 632 VQESKGSEVLTSPRITLSNTQRGNIAVLQTRNYIQSTTVEDGIVTPVIGTVPEGTTFDVR 691 Query: 320 PTVLSPGR-IGLRIQTEV-----------SEPVIGVNAGD--------------MPSYRV 353 P V + + + L + V S GV+ G +P V Sbjct: 692 PIVSADRKFVYLEVTPSVFAIEEIESFTFSGLSEGVSVGGGDGTTYIPPEQTIQLPKLNV 751 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + TV +P GT+++ GL + G+P+LSKIPI+ LF + R ++ + I Sbjct: 752 SQVSVTVYVPDKGTLMIGGLGSLSNKDETSGVPVLSKIPIIKRLFTRDQKTRNKSNLIIL 811 Query: 414 ATPFLV 419 P ++ Sbjct: 812 LKPTII 817 >gi|56414850|ref|YP_151925.1| virulence secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363778|ref|YP_002143415.1| virulence secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129107|gb|AAV78613.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095255|emb|CAR60806.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 562 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 506 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532 >gi|213865044|ref|ZP_03387163.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 501 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 117/327 (35%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT L G V I+ +A+++++ Sbjct: 192 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 242 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 243 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 271 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 272 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 331 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 332 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 389 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP+L K+P++G+LFR S N+ Sbjct: 390 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN---- 445 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 446 -VVRVFMIEPKEIVDPLTPDASESVNN 471 >gi|238909665|ref|ZP_04653502.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 562 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 506 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532 >gi|474942|emb|CAA53049.1| invG [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 562 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 119/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S T + G Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWSGTITI------------G 332 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 506 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532 >gi|320087303|emb|CBY97068.1| Protein invG Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 562 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 506 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532 >gi|161615810|ref|YP_001589775.1| hypothetical protein SPAB_03601 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365174|gb|ABX68942.1| hypothetical protein SPAB_03601 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 553 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 244 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 294 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 295 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 323 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 324 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 383 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 384 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 441 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 442 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 497 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 498 -VVRVFMIEPKEIVDPLTPDASESVNN 523 >gi|62181400|ref|YP_217817.1| invasion protein; outer membrane [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129033|gb|AAX66736.1| invasion protein; outer membrane [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715884|gb|EFZ07455.1| invasion protein; outer membrane [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 562 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 506 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532 >gi|195873613|ref|ZP_02697884.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633590|gb|EDX52004.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 514 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 205 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 255 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 256 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 284 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 285 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 344 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 345 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 402 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 403 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 458 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 459 -VVRVFMIEPKEIVDPLTPDASESVNN 484 >gi|299069241|emb|CBJ40501.1| Type III secretion protein [Ralstonia solanacearum CMR15] Length = 590 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 25/246 (10%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240 + +I ++ + L+Q+G + S +G + + G S Sbjct: 348 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 407 Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 GG S + AL++ R A P + + A + Sbjct: 408 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 467 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + + GV L P V+ G RI + + E + G++P + Sbjct: 468 GYQ--SADLYAISAGVSLRVLPMVVMDGGTVRIRMNVHIE-DGQITSQQVGNLPITSQSE 524 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 DT + G ++++AG + + + +P LSKIP++GALFR + + + T Sbjct: 525 IDTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVT 584 Query: 416 PFLVKP 421 P ++ P Sbjct: 585 PRVITP 590 >gi|194292010|ref|YP_002007917.1| sctc: non flagellar t3S system conserved protein. gsp d family [Cupriavidus taiwanensis LMG 19424] gi|193225914|emb|CAQ71861.1| SctC: non flagellar T3S system conserved protein. GSP D family [Cupriavidus taiwanensis LMG 19424] Length = 580 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 96/259 (37%), Gaps = 24/259 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------TGSSSGPSKS 229 ++++ L++ V ++VTI ++ + L +G + G++ + Sbjct: 324 RRLIESLDVK-PRLVEIEVTIMDISQADLDSLGVDWRLHTPHVDLQLGGGNGNAGLSFGN 382 Query: 230 FAADFGGKFVSEGGDFSVKGVLDR---FSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 A + G + G G + T + AL +A P + + A+ Sbjct: 383 LANEAGTTAATIGSGLQFTGAIGSDVTRYLLTRVKALAERGQANFVARPKVLTLDNTEAA 442 Query: 287 FTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIG 342 + + + G +VT G + TP V+ + L I + G Sbjct: 443 LENLQEFYVRVDGFQDAGLFNVT---AGTAVRVTPLVVDEQQNRAVMLTIDIA-DGNLSG 498 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 +P R R T + G ++++AG ++ G+PLL +PI+G LF+ Sbjct: 499 ETVDRIPVVRRRSITTQAMVEEGKSLLIAGYTTEEKINASSGVPLLQDVPIIGNLFKYQE 558 Query: 403 FNREETEIFIAATPFLVKP 421 + E F TP LV P Sbjct: 559 KRQNNMERFYLLTPRLVIP 577 >gi|205357926|ref|ZP_02574228.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205328766|gb|EDZ15530.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 556 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 247 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 297 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 298 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 326 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 327 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 386 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 387 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 444 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 445 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 500 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 501 -VVRVFMIEPKEIVDPLTPDASESVNN 526 >gi|19705376|ref|NP_602871.1| general secretion pathway protein D [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713363|gb|AAL94170.1| General secretion pathway protein D [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 402 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 93/248 (37%), Gaps = 21/248 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV + I ++ ++ +++GF S S A GK G +V V Sbjct: 153 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIV 212 Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + T ++ LE + + PTL SG+ F + + + Sbjct: 213 RQFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 272 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 273 RYSEPVFKEAGLIMKVKPIIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 332 Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E +++ Sbjct: 333 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 392 Query: 411 FIAATPFL 418 +I + Sbjct: 393 YIKLKVEI 400 >gi|194445131|ref|YP_002042139.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194470942|ref|ZP_03076926.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248412|ref|YP_002147795.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243599|ref|YP_002216867.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205356993|ref|ZP_02344010.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205358415|ref|ZP_02656026.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194403794|gb|ACF64016.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194457306|gb|EDX46145.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197212115|gb|ACH49512.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197938115|gb|ACH75448.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205324767|gb|EDZ12606.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205334513|gb|EDZ21277.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|321223445|gb|EFX48511.1| Protein InvG precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 514 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 205 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 255 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 256 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 284 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 285 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 344 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 345 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 402 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 403 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 458 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 459 -VVRVFMIEPKEIVDPLTPDASESVNN 484 >gi|205359783|ref|ZP_02832405.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342787|gb|EDZ29551.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 556 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 247 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 297 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 298 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 326 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 327 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 386 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 387 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 444 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 445 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 500 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 501 -VVRVFMIEPKEIVDPLTPDASESVNN 526 >gi|21230696|ref|NP_636613.1| HrcC protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769309|ref|YP_244071.1| HrcC protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992461|ref|YP_001904471.1| HrcC protein [Xanthomonas campestris pv. campestris str. B100] gi|21112285|gb|AAM40537.1| HrcC protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574641|gb|AAY50051.1| HrcC protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734221|emb|CAP52429.1| HrcC protein [Xanthomonas campestris pv. campestris] Length = 605 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 88/241 (36%), Gaps = 19/241 (7%) Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSF---AADFGGKFVSEGGDF 245 + TI E+R L+ +G TG G + + + Sbjct: 368 QIDATIIEIRDGALQDLGVDWRFHSRRVDVQTGDGRGGQLGYDGSLSGAAAAGAAAPLGG 427 Query: 246 SVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 ++ VL T + ALE+ + ++ P + + A Q + S Sbjct: 428 TLTAVLGDAGRYLMTRVSALEQTNKAKIVSTPQVATLDNVEAVMDHKQQAFVRV--SGYA 485 Query: 304 ATSVTTHDYGVVLHFTPTV---LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 + + GV L P+V G++ L ++ E + +P + T Sbjct: 486 SADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIE-DGQLGANTVDGIPVITSSEITTQA 544 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D Q +P LS+IP++G LF++ + + + TP +V Sbjct: 545 FVNEGQSLLIAGYASDTDQTDLNNVPGLSRIPLVGNLFKHRQQSGSRLQRLFLLTPHIVS 604 Query: 421 P 421 P Sbjct: 605 P 605 >gi|167840250|ref|ZP_02466934.1| type II/III secretion system protein [Burkholderia thailandensis MSMB43] Length = 303 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 13/226 (5%) Query: 205 VRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETV 259 V + Q+S S P S S + + + S+ VL Sbjct: 82 VDLQTGTGLTSQNSYANGSLNPTFGSISLSGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 141 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 ++ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 142 INALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 198 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P V+ G +I L ++ V + ++P + +T + G +++AG Sbjct: 199 LPMVVEEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKV 257 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P+LGALFR++ +E TP +++P Sbjct: 258 DARSNTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 303 >gi|224584676|ref|YP_002638474.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469203|gb|ACN47033.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 532 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 223 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 273 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 274 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 302 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 303 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 362 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 363 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 420 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 421 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 476 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 477 -VVRVFMIEPKEIVDPLTPDASESVNN 502 >gi|94985829|ref|YP_605193.1| type II and III secretion system protein [Deinococcus geothermalis DSM 11300] gi|94556110|gb|ABF46024.1| type IV pilus assembly protein PilQ [Deinococcus geothermalis DSM 11300] Length = 673 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 62/297 (20%), Positives = 114/297 (38%), Gaps = 38/297 (12%) Query: 152 RTIQDSQRAV---ELSETFLSQSGRNQYANSSSKKVMNLLNIAGE-----DQVTLKVTIA 203 Q Q+A + + + ++V + + + Q+ ++V I Sbjct: 387 SNAQQPQQAAPNSNGATIIADKRTNTLIVRGTPEQVTQIAELVPQLDQVVPQINVQVRIQ 446 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 E+ + +G + S G F L F+ L AL Sbjct: 447 EITETAARTLGLDWKVNFGGFNVSVGSGG--------LGATFDPTQSLVGFNIFPTLQAL 498 Query: 264 ERATAIRTLAEPTLTAISGQSA----------------SFTSGGQHLYKTVSSSTGATSV 307 E + + + +T SGQ + S SGG+ SSS Sbjct: 499 ENQGLTKRVYDGNITMQSGQRSLGSATNTQNASANAAASIKSGGRLEINIPSSSGNIE-- 556 Query: 308 TTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELP 363 DYG+ L F P V G + LR++ +V+ + +P+ + +A +T+ Sbjct: 557 KQIDYGLNLDFFDPQVAPDGTVTLRVRGQVNNIAGTLPTTSVPNLLNFTNSEAQSTITFK 616 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 SG T++++GLL + +G+P LS +P++GA F RE++++ + T +VK Sbjct: 617 SGQTVLMSGLLGTTESRTNDGVPFLSSLPVIGAAFGKQTTRREQSQLLVIITGSVVK 673 >gi|197263182|ref|ZP_03163256.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205360510|ref|ZP_02683952.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197241437|gb|EDY24057.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205349182|gb|EDZ35813.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 514 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 205 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 255 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 256 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 284 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 285 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 344 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 345 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 402 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 403 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 458 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 459 -VVRVFMIEPKEIVDPLTPDASESVNN 484 >gi|50121028|ref|YP_050195.1| type III secretion system protein [Pectobacterium atrosepticum SCRI1043] gi|42560404|gb|AAS20364.1| HrcC [Pectobacterium atrosepticum] gi|49611554|emb|CAG75002.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043] Length = 689 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 108/320 (33%), Gaps = 33/320 (10%) Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 S V L G + + A+ + ++ + ++++ +++ ++ V + Sbjct: 277 ASSRVTLSGKI-SADVRNNALLI--------RDDEKRRAEYQQLVEHIDVP-QNLVNIDA 326 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 I +V R L ++ + + FVS D F + Sbjct: 327 IILDVDRTALSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADI 375 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 ALE +A P++ + Q A ++ + G L TP Sbjct: 376 QALEGEGTASIVANPSVLTLENQPA--IVDFSRTAFITATGERVADIQPVTAGTSLQVTP 433 Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 V+ G I L I E + G G+ + T + +VL G ++ Sbjct: 434 RVIGEGAQRSIQLVIDIEDGQVETGRE-GEASGVKRGTVSTQALIGENRALVLGGFHVEE 492 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 IP+L IP+LG LF ++R E TP LV D + P + S Sbjct: 493 SGDRDRRIPILGDIPLLGKLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSV 547 Query: 438 DDAKAF-FFNRVNKIYGPKE 456 + + NRV + G + Sbjct: 548 NRQQLNGAMNRVAQRNGKTD 567 >gi|269118877|ref|YP_003307054.1| type II and III secretion system protein [Sebaldella termitidis ATCC 33386] gi|268612755|gb|ACZ07123.1| type II and III secretion system protein [Sebaldella termitidis ATCC 33386] Length = 368 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 117/276 (42%), Gaps = 16/276 (5%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI-----AGEDQVTLKVTIAEV 205 + T + + +++ + ++ G+ + +++ L I + Q+ +K TI + Sbjct: 90 IDTSELIPKLKDINTSKITGLGKELILKGTMEEINELKYIIEKFDRPKKQIQIKATIIDT 149 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 ++ +++G S ++ + F + F +S G G + + AL+ Sbjct: 150 SDNLFERLGVDFSAGKNNDNKASDFLSSFIDGNLSLSGLLKTGGNFLGIN----IDALKE 205 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTV 322 I+ A P L + G + + S+ T + GVV P + Sbjct: 206 NGDIKIEAMPVLLILEGSEGELRVTEEVIVGEKKSTIKDTEYIEPVFAEAGVVFKIKPEI 265 Query: 323 L---SPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 I L I +E+S + N D + + K ++ V +G ++ + GL ++ Sbjct: 266 RGFGDSQEIILYIDSEISNFKLSSNFNADQGAKQKNKINSIVSFKNGTSVFIGGLKQNVQ 325 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + ++ +P+LSKIPILG+LFR R N+E +I+I Sbjct: 326 KDSEKRVPVLSKIPILGSLFRYKRKNKEIRDIYIEI 361 >gi|270488174|ref|ZP_06205248.1| type IV pilus secretin PilQ [Yersinia pestis KIM D27] gi|270336678|gb|EFA47455.1| type IV pilus secretin PilQ [Yersinia pestis KIM D27] Length = 422 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 76/196 (38%), Gaps = 6/196 (3%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV L I + + L+++G + + G+++ F + + F V + Sbjct: 219 QQVQLSAHIVTISSEDLQELGVRWGMGEGKGNTALRINDFNVNLPLPNSAASVGFHVARI 278 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 R + E+ + +A P L Q+AS G Y A ++ Sbjct: 279 GGRLLELELSAL-EQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 337 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTI 368 + + + TP +L G+I L ++ + P I + G +M ++ T V + G TI Sbjct: 338 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 397 Query: 369 VLAGLLKDDIQQLKEG 384 VL G+ + ++ Sbjct: 398 VLGGIFQQKNARVLIK 413 >gi|322614284|gb|EFY11215.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621652|gb|EFY18505.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624513|gb|EFY21346.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628844|gb|EFY25627.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633429|gb|EFY30171.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635995|gb|EFY32703.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639703|gb|EFY36388.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322650654|gb|EFY47059.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654733|gb|EFY51052.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658954|gb|EFY55207.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664479|gb|EFY60673.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668272|gb|EFY64429.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673748|gb|EFY69849.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677809|gb|EFY73872.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681361|gb|EFY77393.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683763|gb|EFY79773.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193848|gb|EFZ79051.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200318|gb|EFZ85400.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205574|gb|EFZ90539.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210085|gb|EFZ94988.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216388|gb|EGA01115.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221135|gb|EGA05566.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226957|gb|EGA11139.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230759|gb|EGA14877.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234890|gb|EGA18976.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238929|gb|EGA22979.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241629|gb|EGA25660.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248224|gb|EGA32160.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251192|gb|EGA35065.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256076|gb|EGA39814.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263211|gb|EGA46749.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264286|gb|EGA47792.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271112|gb|EGA54540.1| type III secretion system outer membrane pore InvG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 562 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 303 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + + LD F ++ALE ++ P L A F + K Sbjct: 333 DKLGVSLNQASISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 393 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 506 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 507 -VVRVFMIEPKEIVDPLTPDASESVNN 532 >gi|194448425|ref|YP_002046858.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359156|ref|ZP_02667567.2| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194406729|gb|ACF66948.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338023|gb|EDZ24787.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 556 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 247 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 297 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 298 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 326 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + + LD F ++ALE ++ P L A F + K Sbjct: 327 DKLGVSLNQASISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 386 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 387 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 444 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 445 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 500 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 501 -VVRVFMIEPKEIVDPLTPDASESVNN 526 >gi|253581772|ref|ZP_04858996.1| general secretion pathway protein D [Fusobacterium varium ATCC 27725] gi|251836121|gb|EES64658.1| general secretion pathway protein D [Fusobacterium varium ATCC 27725] Length = 563 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 96/259 (37%), Gaps = 26/259 (10%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-----SSSGPSKSFA--ADFGGKFVSEGGDFS 246 QV + I +V ++ + +GF +SG S A VS G + Sbjct: 282 QQVRITSQILDVTDNLFETLGFDWLYNNVGSVEKNSGLDISLIGKAALDSAGVSFGSGIN 341 Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 + + + ++ L+ + A P++ G+ F + + Sbjct: 342 LVRQFNNGNDVLGLGINLLQATQDLVISAMPSILVADGEEGEFKITEEVIVGEEKKENDN 401 Query: 305 TSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSE------------PVIGVNAGD 347 T T + G++L P + G I L++ EVS G + Sbjct: 402 TEKTTYTPLFREAGIILKVKPLIKENGTIFLKVMIEVSNFRLKKNEKENMISEGGTYNSE 461 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 S R +TTV++ G TI + GL + IQ L +P L +P++ F+N +E Sbjct: 462 GGSKIGRSIETTVKMRDGETIFIGGLKRAVIQNLDSQVPFLGTLPVINIFFKNQSVKKEI 521 Query: 408 TEIFIAATPFLVKPVAMRD 426 T+I+I + K +D Sbjct: 522 TDIYIKLKVDIEKDTWEKD 540 >gi|171319944|ref|ZP_02909020.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] gi|171094800|gb|EDT39838.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MEX-5] Length = 679 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 101/278 (36%), Gaps = 44/278 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222 + ++N L+ V + VTI ++ D L +G T Sbjct: 326 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274 + + G + G F G+ S L +AL + + ++ Sbjct: 385 NGAGNPPLTFGIGTSETGQTGAFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS--------- 324 P + A+ A + Q + + SVTT G + TP ++ Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAV 501 Query: 325 ---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 P + + I + V G ++P + R T + G ++++AG D+++ Sbjct: 502 SGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLN 561 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 K G+P LS IP++G LF+ + + E F TP +V Sbjct: 562 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVV 599 >gi|300697476|ref|YP_003748137.1| type III secretion protein [Ralstonia solanacearum CFBP2957] gi|299074200|emb|CBJ53745.1| Type III secretion protein [Ralstonia solanacearum CFBP2957] Length = 589 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 88/246 (35%), Gaps = 25/246 (10%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240 + +I ++ L+Q+G + S +G + + G S Sbjct: 347 ISASIIDITETALEQLGVDWRLHNSRFDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 406 Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 GG S + AL++ R A P + + A + Sbjct: 407 TPAGGVLSAVIGGGSRYLMARISALQQTNQARITASPKVATLDNTEAVMDNRQNFYVPVA 466 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + + GV L P V+ G RI + + E + G++P + Sbjct: 467 GYQ--SADLYAISAGVSLRVLPMVVMDGGTVRIRMNVHIE-DGQITSQQVGNLPVTSQSE 523 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 DT + G ++++AG D + + +P LSKIP++GALFR + + + T Sbjct: 524 IDTQALINEGESLLIAGYSVDQQAKTVDAVPGLSKIPLVGALFRTDQTTGQRFQRMFLVT 583 Query: 416 PFLVKP 421 P ++ P Sbjct: 584 PRVITP 589 >gi|172063770|ref|YP_001811421.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia ambifaria MC40-6] gi|171996287|gb|ACB67205.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MC40-6] Length = 680 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 101/278 (36%), Gaps = 44/278 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222 + ++N L+ V + VTI ++ D L +G T Sbjct: 326 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274 + + G + G F G+ S L +AL + + ++ Sbjct: 385 NGAGNPPLTFGIGTSETGQTGAFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS--------- 324 P + A+ A + Q + + SVTT G + TP ++ Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAV 501 Query: 325 ---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 P + + I + V G ++P + R T + G ++++AG D+++ Sbjct: 502 SGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLN 561 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 K G+P LS IP++G LF+ + + E F TP +V Sbjct: 562 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVV 599 >gi|297621836|ref|YP_003709973.1| putative type III secretion protein SctC [Waddlia chondrophila WSU 86-1044] gi|297377137|gb|ADI38967.1| putative type III secretion protein SctC [Waddlia chondrophila WSU 86-1044] Length = 1115 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 92/268 (34%), Gaps = 43/268 (16%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------- 246 QV +++ I E + G S G S + A + G G + Sbjct: 802 RQVFIEMLILETTLEDSLDYGVAWG--SHSGGGSTATAQAYIGGASPLVGALNRDLSGTN 859 Query: 247 -------------VKGVLDR---------FSFETVLHALERATAIRTLAEPTLTAISGQS 284 G++ R + ++ A + + P + ++ Sbjct: 860 TPDASNLITDVGYTLGIIGRRLTHNGTQFATLGALVTAQHNRQNSKVILNPKIITEDNKT 919 Query: 285 ASFTSGGQHLYKTVSSSTG-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 A G ++T S S T+ D G + TP + + + L I+ EVS Sbjct: 920 AELFVGINTRFQTNSISNDEGSVITTNFEYRDVGTTIRVTPLIGNGDIVTLEIEEEVSRV 979 Query: 340 VIGVNAG-------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 G + P+ + + TTV +P ++++GL++D+ + P L IP Sbjct: 980 APQAVQGGSDIQDPNAPTTSISRTSTTVHVPDRHFVIISGLIQDEKIHSRNQFPCLGGIP 1039 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420 I+GA F + + + P ++ Sbjct: 1040 IIGAAFSAKINDDVKRTQMLFIRPQIID 1067 >gi|219566964|dbj|BAH04995.1| Hrp conserved transmembrane protein [Ralstonia solanacearum] Length = 568 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 25/246 (10%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240 + +I ++ + L+Q+G + S +G + + G S Sbjct: 326 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 385 Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 GG S + AL++ R A P + + A + Sbjct: 386 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 445 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + + GV L P V+ G RI + + E + G++P + Sbjct: 446 GYQ--SADLYAISAGVSLRVLPMVVMDGGTVRIRMNVHIE-DGQITSQQVGNLPITSQSE 502 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 DT + G ++++AG + + + +P LSKIP++GALFR + + + T Sbjct: 503 IDTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVT 562 Query: 416 PFLVKP 421 P ++ P Sbjct: 563 PRVITP 568 >gi|200387736|ref|ZP_03214348.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928222|ref|ZP_03219422.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|199604834|gb|EDZ03379.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322544|gb|EDZ07741.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 514 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 205 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 255 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 256 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 284 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + + LD F ++ALE ++ P L A F + K Sbjct: 285 DKLGVSLNQASISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 344 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 345 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 402 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 403 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 458 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 459 -VVRVFMIEPKEIVDPLTPDASESVNN 484 >gi|197335747|ref|YP_002157088.1| fimbrial assembly protein PilQ [Vibrio fischeri MJ11] gi|197317237|gb|ACH66684.1| fimbrial assembly protein PilQ [Vibrio fischeri MJ11] Length = 562 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 72/362 (19%), Positives = 133/362 (36%), Gaps = 90/362 (24%) Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 VG+ + ++ G +I V+ +++++L + Sbjct: 253 VGEGEITMLSSRG----------------------------SITVDERTNSLLLRDLPEN 284 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 I + K +++ L+I + QV ++ I V L ++ Sbjct: 285 I------------------------TVIKDIIDTLDIPIK-QVQIEARIVTVNEGNLDEL 319 Query: 214 GFQHSITGSSSGPS--KSFAADFGGKFVSEGGD--------------------------- 244 G + IT ++ + S ++ + +GG Sbjct: 320 GVRWGITNTNGSTTVGGSIESNLAAVGLYDGGGSDDKKSGNNSLPVDDFLNVNLGLANPA 379 Query: 245 -----FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 F V + + L AL+ + ++ P L + + A G + Y S Sbjct: 380 ASSIAFQVAKLGSDLLLDLELSALQAESKAEIISSPRLITTNKKPAYIEQGTEIPYLEAS 439 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKAD 357 SS GATSV+ + L TP + R+ L + P V+ G+ + ++ Sbjct: 440 SS-GATSVSFKKAVLSLMVTPQITPDNRLVLDLTVTQDRPGQVVKTGTGEAVAIDTQRIG 498 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T V + +G T+VL G+ + + E +PLL +P+LGALFR S N + E+ I TP Sbjct: 499 TQVLVDNGETVVLGGIYQHSLSNSVEKVPLLGDLPLLGALFRRSSENIGKKELLIFVTPK 558 Query: 418 LV 419 +V Sbjct: 559 VV 560 >gi|17549095|ref|NP_522435.1| Hrp conserved HRCC transmembrane protein [Ralstonia solanacearum GMI1000] gi|2833448|sp|Q52498|HRPA_RALSO RecName: Full=Hypersensitivity response secretion protein hrpA; Flags: Precursor gi|6066715|emb|CAB58261.1| HrpA [Ralstonia solanacearum] gi|17431346|emb|CAD18025.1| hrp conserved hrcc transmembrane protein [Ralstonia solanacearum GMI1000] gi|1097294|prf||2113360W hrpA gene Length = 568 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 25/246 (10%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240 + +I ++ + L+Q+G + S +G + + G S Sbjct: 326 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 385 Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 GG S + AL++ R A P + + A + Sbjct: 386 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 445 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + + GV L P V+ G RI + + E + G++P + Sbjct: 446 GYQ--SADLYAISAGVSLRVLPMVVMDGGTVRIRMNVHIE-DGQITSQQVGNLPITSQSE 502 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 DT + G ++++AG + + + +P LSKIP++GALFR + + + T Sbjct: 503 IDTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVT 562 Query: 416 PFLVKP 421 P ++ P Sbjct: 563 PRVITP 568 >gi|167577363|ref|ZP_02370237.1| type II/III secretion system protein [Burkholderia thailandensis TXDOH] Length = 605 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S S A + + S+ VL + ALE + RT A P Sbjct: 400 NGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLARIDALESSNQARTDASP 459 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 460 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVEEGGRTQIKLD 516 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 517 VRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 575 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P+LGALFR++ +E TP +++P Sbjct: 576 PLLGALFRSTDKQDSHSERLFLVTPRVIEP 605 >gi|157364734|ref|YP_001471501.1| type II and III secretion system protein [Thermotoga lettingae TMO] gi|157315338|gb|ABV34437.1| type II and III secretion system protein [Thermotoga lettingae TMO] Length = 385 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 5/227 (2%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV + V ++EV +D L +IG G + G ++ + D+ G SV+ + Sbjct: 164 PRQVKISVVVSEVSKDNLGEIGLDQ--IGYTFGANQQYNEDWTAVLGLISGVLSVQTDVF 221 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + L ALE+ + A+P + + A G + + T+ T Sbjct: 222 G-TIVARLRALEQDQKAKIKADPWIIVQENKPARLFVGQREIIILQPEEGTTTTETVDVG 280 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 V + T V+ + + + +S + S + + TT+ + SG T+V++G Sbjct: 281 -VGIDITARVVGKNELEINVAPNISHFTTAQTTSSL-STKRSELSTTLRIQSGQTVVISG 338 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L ++ GIPLL IP+L LF ++ + E+ I + ++ Sbjct: 339 LTVENSSDGYTGIPLLGNIPLLRYLFGVKSDSQSQREVIIFLSAEIL 385 >gi|53716218|ref|YP_106182.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|124381659|ref|YP_001025783.1| type II/III secretion system protein [Burkholderia mallei NCTC 10229] gi|126446314|ref|YP_001077867.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|254201058|ref|ZP_04907423.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei FMH] gi|254205023|ref|ZP_04911376.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei JHU] gi|254359145|ref|ZP_04975417.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei 2002721280] gi|52422188|gb|AAU45758.1| type II/III secretion system protein [Burkholderia mallei ATCC 23344] gi|126239168|gb|ABO02280.1| type II/III secretion system protein [Burkholderia mallei NCTC 10247] gi|147748670|gb|EDK55745.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei FMH] gi|147754609|gb|EDK61673.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei JHU] gi|148028332|gb|EDK86292.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei 2002721280] gi|261826429|gb|ABM99750.2| type II/III secretion system protein [Burkholderia mallei NCTC 10229] Length = 599 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 394 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 453 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 454 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGCTQIKLD 510 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 511 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 569 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 570 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 599 >gi|332297951|ref|YP_004439873.1| type II and III secretion system protein [Treponema brennaborense DSM 12168] gi|332181054|gb|AEE16742.1| type II and III secretion system protein [Treponema brennaborense DSM 12168] Length = 667 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 12/225 (5%) Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 I + ++ G S++ S G + G +V G L F ++ Sbjct: 414 ILQYQKSSNLSWGITSSMSPLSPGNKTLVTGELGNLLNLSFDAITVFGYL----FAARIN 469 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDY-GVV 315 A + TL +SGQ +F + Y+ + T +T G+V Sbjct: 470 AALSKNEANVFTDTTLYGVSGQKITFKNTNTFRYRDSNIDPQTGKPLYTGITREIISGLV 529 Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 L + G + + + VS+ + G+ P + T V+ SG +VL+GL Sbjct: 530 LEIDGWISGDGMVTMDVTASVSKRGVDVSTKTGNPPPTSEKIVTTQVKARSGEPVVLSGL 589 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 ++D +++G+P +S+IP+LG LF++ E+ E+ I P + Sbjct: 590 TQNDKTFVEQGVPFISRIPVLGNLFKSRDETEEKNEMVIYLVPHI 634 >gi|194736395|ref|YP_002115850.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197300771|ref|ZP_02660996.2| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194711897|gb|ACF91118.1| type III secretion outer membrane pore, YscC/HrcC family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290685|gb|EDY30039.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 514 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 57/327 (17%) Query: 122 HLEMTLRRFIADSNIRVEMVSDT--VVLHGM---VRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT +++ G V I+ +A+++++ Sbjct: 205 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH--------- 255 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 256 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 284 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + + LD F ++ALE ++ P L A F + K Sbjct: 285 DKLGVSLNQASISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 344 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 345 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 402 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 T +P G ++++ G +D + IP L K+P++G+LFR S N+ Sbjct: 403 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN---- 458 Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 459 -VVRVFMIEPKEIVDPLTPDASESVNN 484 >gi|254255049|ref|ZP_04948366.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] gi|124899694|gb|EAY71537.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] Length = 552 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 79/421 (18%), Positives = 141/421 (33%), Gaps = 36/421 (8%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72 + L+ S P + ++ AN+ + ++ + + I + VI DV++ Sbjct: 145 ASTLYVSGPPIYVDLVVQMANSLDQETASIDEKRVEIIKVHNTFVIDRTFTRRTGDVVI- 203 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 P A L + +G+ N I+ + + + L I Sbjct: 204 -PGIAT----------LVQRAIGEENAIVETKRLDASASKEAVNPAAADGTMPALDAAIG 252 Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQ-RAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 R G V+T R V ET ++++ L+ Sbjct: 253 PPPTR---------PSGAVQTSSSHGVRIVAYPETNSLMVKGTPEQVKFVRQLVQALD-E 302 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + + L + I ++ R+ L Q+G T S G S S + + GG Sbjct: 303 EKRHIELALWIIDLEREALDQLGVNWRGTVSLGGMSASLNMNNNTSLSTVGGT------- 355 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 F + AL R + ++ P + A F S K V A + Sbjct: 356 ---EFIASVTALARDRRAQIVSRPVVLTQENTPAVFDSSQTFYAKLVGER--AVDLKEVT 410 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 YG +++ P + I L + E S V+ MP+ K T +P G ++++ Sbjct: 411 YGTMVNVVPRFNAKDDIELALNIEDGSAKSSNVDQDPMPTVNRTKISTVARVPKGKSLLV 470 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 G + + + E IP L +P +G LFR +T +P + D Sbjct: 471 GGYTRGETGDVVEKIPGLGSLPFIGGLFRFKTEVNRDTVRVFLISPREITDGLDTDFRTI 530 Query: 431 D 431 D Sbjct: 531 D 531 >gi|237743199|ref|ZP_04573680.1| general secretion pathway protein D [Fusobacterium sp. 7_1] gi|229433495|gb|EEO43707.1| general secretion pathway protein D [Fusobacterium sp. 7_1] Length = 423 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 21/248 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV + I ++ ++ +++GF S S A GK G +V V Sbjct: 174 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIV 233 Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + ++ LE + + PTL SG+ F + + + Sbjct: 234 RQFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 293 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 294 RYSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 353 Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E +++ Sbjct: 354 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 413 Query: 411 FIAATPFL 418 +I + Sbjct: 414 YIKLKVEI 421 >gi|237741044|ref|ZP_04571525.1| general secretion pathway protein D [Fusobacterium sp. 4_1_13] gi|229431088|gb|EEO41300.1| general secretion pathway protein D [Fusobacterium sp. 4_1_13] Length = 423 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 21/248 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV + I ++ ++ +++GF S S A GK G +V V Sbjct: 174 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIV 233 Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + ++ LE + + PTL SG+ F + + + Sbjct: 234 RQFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 293 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 294 RYSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 353 Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E +++ Sbjct: 354 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 413 Query: 411 FIAATPFL 418 +I + Sbjct: 414 YIKLKVEI 421 >gi|254175910|ref|ZP_04882568.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] gi|160696952|gb|EDP86922.1| type II/III secretion system protein [Burkholderia mallei ATCC 10399] Length = 599 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 394 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 453 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 454 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGCTQIKLD 510 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 511 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 569 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 570 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 599 >gi|197286525|ref|YP_002152397.1| type III secretion system protein [Proteus mirabilis HI4320] gi|194684012|emb|CAR45306.1| type III secretion system protein [Proteus mirabilis HI4320] Length = 571 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 95/277 (34%), Gaps = 23/277 (8%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 ++ + +++ L+ + QV L + I ++ + +G + S + F Sbjct: 298 KTSREGLALVSSLISQLDKP-KRQVELSLWIIDISKSKADSLGVNWQGSYGSGKNTFFF- 355 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + + + FSF + + AL + ++ P L A F + Sbjct: 356 ------------NTASLSAVSGFSFLSKIKALSEEGEAKMVSRPILLTQENTPAIFDNNT 403 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTV-LSPGRIGLRIQTEVSEPVIGVNAG---- 346 + + TT +G ++ P + + I + I E + Sbjct: 404 TFYTQIKGERVASLESTT--FGTMISVLPRISNTNQEIEMIINLEDGAEKKSDDEDREEG 461 Query: 347 --DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P T + GG++++ G ++D + + IP LS IP++G F N Sbjct: 462 IEKLPVINRTNISTVARVSEGGSLLIGGYTREDNIKAENKIPFLSAIPLVGRAFSYQSDN 521 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 ++ P L+ L +H + D K Sbjct: 522 NKKMVRIFMLQPRLLDKTDTHGLDSLTEHPFLPMDKK 558 >gi|254250197|ref|ZP_04943517.1| Type II secretory pathway, component PulD [Burkholderia cenocepacia PC184] gi|124876698|gb|EAY66688.1| Type II secretory pathway, component PulD [Burkholderia cenocepacia PC184] Length = 463 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 103/283 (36%), Gaps = 44/283 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222 + ++N L+ V + VTI ++ D L +G T Sbjct: 78 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQY 136 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274 + + G + G F G+ S L +AL + + ++ Sbjct: 137 NGVGNPPLTFGIGTSETGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 196 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS--------- 324 P + A+ A + Q + + SVTT G + TP ++ Sbjct: 197 PKVLALDNTEAILENLTQFYVQVPGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAV 253 Query: 325 ---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 P + + I + V G ++P + R T + G ++++AG D+++ Sbjct: 254 SGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLN 313 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 K G+P LS IP++G LF+ + + E F TP +V +M Sbjct: 314 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASM 356 >gi|327538876|gb|EGF25517.1| general secretion pathway protein D [Rhodopirellula baltica WH47] Length = 1261 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 110/320 (34%), Gaps = 61/320 (19%) Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219 AV ++T + +++++ L+ V +K IAEVR D +IG + + Sbjct: 730 AVAEAQTNSVLLSVSPRIYEEVRQLIDRLDRR-PPMVLIKTLIAEVRLDDGFEIGGEFGL 788 Query: 220 TGS-------------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------------ 254 S + P+ +FGG + F + + + Sbjct: 789 QDSLLFDRGKATGAIATDNPASDPGFNFGGTNLPNSNSFGQESLASQGLTNFGATATQLT 848 Query: 255 -----------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 S L L A ++ L+ P + G T Sbjct: 849 RVGGLNSGGFVFSAASESVNLFLRTLRVANRLQILSRPEIMTADNTEGYVQVGQNFPRPT 908 Query: 298 --VSSSTGATS------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGD 347 +STG S + D G++L TP V + G I + I S +G G Sbjct: 909 ELTFTSTGGNSTQPIIGIEDVDIGIILRVTPRVGADGMIFMAIDATRSAINNDVGQTIGS 968 Query: 348 --------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 +P+ A TV G T+V GL++ Q +P L+ IP+LG F+ Sbjct: 969 FDNGDPIFVPAIDTTTAQATVTAFDGQTVVFGGLIQKYRQNRTSRVPYLADIPLLGTFFK 1028 Query: 400 NSRFNREETEIFIAATPFLV 419 + +E+ + TP LV Sbjct: 1029 YDSEIEQRSELLVVMTPILV 1048 >gi|167003376|ref|ZP_02269162.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei PRL-20] gi|243061081|gb|EES43267.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei PRL-20] Length = 599 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 394 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 453 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 454 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGCTQIKLD 510 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 511 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 569 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E F TP +++P Sbjct: 570 PLVGALFRSTDKQNSHSERFFLVTPRVIEP 599 >gi|170699432|ref|ZP_02890477.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] gi|170135688|gb|EDT03971.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] Length = 680 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 57/283 (20%), Positives = 103/283 (36%), Gaps = 44/283 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222 + ++N L+ V + VTI ++ D L +G T Sbjct: 326 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274 + + G + G F G+ S L +AL + + ++ Sbjct: 385 NGAGNPPLTFGIGTSETGQTGTFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS--------- 324 P + A+ A + Q + + SVTT G + TP ++ Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAV 501 Query: 325 ---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 P + + I + V G ++P + R T + G ++++AG D+++ Sbjct: 502 SGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLN 561 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 K G+P LS IP++G LF+ + + E F TP +V AM Sbjct: 562 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTAAM 604 >gi|126457187|ref|YP_001076198.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1106a] gi|242313849|ref|ZP_04812866.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] gi|126230955|gb|ABN94368.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106a] gi|242137088|gb|EES23491.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] Length = 599 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 394 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 453 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 454 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 510 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 511 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 569 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 570 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 599 >gi|330963695|gb|EGH63955.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 195 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 10/192 (5%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + G + + + + +L V V+V++P AD+ V SP +Y+FGK GQ ++I Sbjct: 13 IAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIA 72 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 + +G++ L + + A + L+ S R+ V+ G V+ + ++ Sbjct: 73 LDSEGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLN 132 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 L LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 133 AL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALF 182 Query: 222 SSSGPSKSFAAD 233 ++ S Sbjct: 183 NNGTFSFGLLTG 194 >gi|53722615|ref|YP_111600.1| type III secretion system protein [Burkholderia pseudomallei K96243] gi|52213029|emb|CAH39067.1| putative type III secretion system protein [Burkholderia pseudomallei K96243] Length = 601 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|38639336|gb|AAR25802.1| BcscC [Burkholderia multivorans E243] Length = 504 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 107/314 (34%), Gaps = 47/314 (14%) Query: 196 VTLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPSKSFAADFGG 236 V + VTI ++ D L +G T + + G Sbjct: 163 VEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTFGIGA 222 Query: 237 KFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAEPTLTAISGQSASFT 288 + G F G+ S L +AL + + ++P + A+ A Sbjct: 223 SESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTEAILE 282 Query: 289 SGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTE 335 + Q + + SVTT G + TP ++ + + I + Sbjct: 283 NLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDDAIRNAAAVSGRPESVMMSIDIQ 339 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V G ++P + R T + G ++++AG D+++ K G+P LS IP++G Sbjct: 340 DGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIG 399 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDDAKAFFFNR--VNKI 451 LF+ + + E F TP +V +M D S + D R N I Sbjct: 400 NLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPDNDI 459 Query: 452 YGPKEASEVEGQNY 465 P + G + Sbjct: 460 AVPLTPRPLPGTKF 473 >gi|254185101|ref|ZP_04891690.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] gi|184215693|gb|EDU12674.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] Length = 601 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|238796118|ref|ZP_04639629.1| Possible type III secretion system protein [Yersinia mollaretii ATCC 43969] gi|238720063|gb|EEQ11868.1| Possible type III secretion system protein [Yersinia mollaretii ATCC 43969] Length = 556 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 93/251 (37%), Gaps = 21/251 (8%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + QV L + I +V R + +G + ++ + GG V+ F+ + Sbjct: 299 SSRSQVELSLWIIDVVRSKVDDLGVRW----------EAGSIGVGGGTVT----FNRSTL 344 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 D F + A+ ++ R ++ P + A F + T ++ Sbjct: 345 TDSSMFLAQIDAISKSGNARIVSRPVILTQENVPAMFDNNTSFY--TRVEGERVATLEQV 402 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 YG ++ P + + + + + E + + +P +T + Sbjct: 403 TYGTMISVLPRLSAGNSVEMEVNIEDGGLSRDKSGKVADVEGLPQVNRTNINTVARVGRN 462 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +D ++ + IPLL IP++G LF+ N+++ P L+ Sbjct: 463 NSLLIGGYTRDQVEDSESQIPLLGDIPLVGNLFKYRAHNQQKMIRIFLIQPRLLDENEAW 522 Query: 426 DLSRPDDHYSV 436 D + D+ + Sbjct: 523 DGRQFSDNERL 533 >gi|237508433|ref|ZP_04521148.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] gi|235000638|gb|EEP50062.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] Length = 601 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|217425129|ref|ZP_03456624.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] gi|217391734|gb|EEC31761.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] Length = 601 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|134281959|ref|ZP_01768665.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] gi|134246488|gb|EBA46576.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] Length = 601 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|254186924|ref|ZP_04893440.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|157934608|gb|EDO90278.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] Length = 599 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 394 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 453 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 454 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 510 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 511 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 569 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 570 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 599 >gi|126445193|ref|YP_001063243.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 668] gi|126224684|gb|ABN88189.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 668] Length = 601 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|76819172|ref|YP_335807.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1710b] gi|226198470|ref|ZP_03794038.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|254264542|ref|ZP_04955407.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] gi|254301393|ref|ZP_04968837.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|76583645|gb|ABA53119.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710b] gi|157811287|gb|EDO88457.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|225929527|gb|EEH25546.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|254215544|gb|EET04929.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] Length = 601 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|254194240|ref|ZP_04900672.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei S13] gi|169650991|gb|EDS83684.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei S13] Length = 601 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 396 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 455 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 456 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 512 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 513 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 571 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 572 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 601 >gi|171915532|ref|ZP_02931002.1| fimbrial assembly protein [Verrucomicrobium spinosum DSM 4136] Length = 634 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 106/321 (33%), Gaps = 81/321 (25%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240 +++ A QV +++ + EV +K++G + + S+ A GG+ V Sbjct: 300 DSLVDQAVNATAKQVEIQIRMVEVSDARVKELGIDWLLGQFNVPGSEKIFASGGGQSVPG 359 Query: 241 -----------------------------------------EGGDFSVKGVLDRFSFETV 259 G F+V GVL F+ V Sbjct: 360 EVLPFAGRTVTDGLRSATEVLGLRSSGTRIGRALVPGADAKSPGAFAVSGVLTDPQFQGV 419 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-------TVSSSTGA-------- 304 L L ++ I +A PTL SGQ A+ + Y T + +TG Sbjct: 420 LRGLNQSKGIDVMATPTLFTKSGQRAALKMVKEFRYPKEYDAPETPTRTTGGGLGKPSSP 479 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE--------------VSEPVIGVNAGDM-- 348 S D G+V P + I L + + + + Sbjct: 480 RSFEKRDVGIVFEVEPVIGQNKVIELSLSPSFLEFEGFIDYGQDFQNSTTDRLTGQPVYF 539 Query: 349 --------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 P +R + T V + G T+VL G + + + +P++ +P++G F++ Sbjct: 540 TVENQILQPIFRANRISTAVSIWDGCTVVLGGAAFEKRFRADDKVPVVGDLPLIGRTFQS 599 Query: 401 SRFNREETEIFIAATPFLVKP 421 E T + T +V P Sbjct: 600 KVKQVERTNVLFFVTARIVDP 620 >gi|260495319|ref|ZP_05815446.1| general secretion pathway protein D [Fusobacterium sp. 3_1_33] gi|260197097|gb|EEW94617.1| general secretion pathway protein D [Fusobacterium sp. 3_1_33] Length = 515 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 21/248 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV + I ++ ++ +++GF S S A K G +V V Sbjct: 266 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIV 325 Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + T ++ LE + + PTL SG+ F + + + Sbjct: 326 RQFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 385 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 386 RYSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 445 Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E +++ Sbjct: 446 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 505 Query: 411 FIAATPFL 418 +I + Sbjct: 506 YIKLKVEI 513 >gi|115358977|ref|YP_776115.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia ambifaria AMMD] gi|115284265|gb|ABI89781.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria AMMD] Length = 681 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 57/283 (20%), Positives = 103/283 (36%), Gaps = 44/283 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222 + ++N L+ V + VTI ++ D L +G T Sbjct: 326 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274 + + G + G F G+ S L +AL + + ++ Sbjct: 385 NGAGNPPLTFGIGTSETGQTGAFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS--------- 324 P + A+ A + Q + + SVTT G + TP ++ Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAV 501 Query: 325 ---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 P + + I + V G ++P + R T + G ++++AG D+++ Sbjct: 502 SGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLN 561 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 K G+P LS IP++G LF+ + + E F TP +V AM Sbjct: 562 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTAAM 604 >gi|256027610|ref|ZP_05441444.1| general secretion pathway protein D [Fusobacterium sp. D11] Length = 515 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 21/248 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV + I ++ ++ +++GF S S A K G +V V Sbjct: 266 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIV 325 Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + T ++ LE + + PTL SG+ F + + + Sbjct: 326 RQFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 385 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 386 RYSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 445 Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E +++ Sbjct: 446 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 505 Query: 411 FIAATPFL 418 +I + Sbjct: 506 YIKLKVEI 513 >gi|134294019|ref|YP_001117755.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia vietnamiensis G4] gi|134137176|gb|ABO58290.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia vietnamiensis G4] Length = 679 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 60/308 (19%), Positives = 109/308 (35%), Gaps = 46/308 (14%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222 + +++ L+ V + VTI ++ D L +G T Sbjct: 326 QSLIDQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274 + + G + G F G+ S L +AL + + ++ Sbjct: 385 NGAGNPPLTFGIGASETGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS--------- 324 P + A+ A + Q + + SVTT G + TP ++ Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQDSSLYSVTT---GTSIKVTPMIVDEAIRHAAAV 501 Query: 325 ---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 P + + I + V G ++P + R T + G ++++AG D+++ Sbjct: 502 SGTPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLN 561 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDD 439 K G+P LS IP++G LF+ + + E F TP +V +M D S + D Sbjct: 562 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASMYAPDGSPVNPGADAPAD 621 Query: 440 AKAFFFNR 447 A R Sbjct: 622 PNAMSMYR 629 >gi|282892150|ref|ZP_06300624.1| hypothetical protein pah_c209o019 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497951|gb|EFB40296.1| hypothetical protein pah_c209o019 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 852 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 56/281 (19%), Positives = 104/281 (37%), Gaps = 29/281 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--------EGGD 244 + V ++V + E R + Q G TG+++ + + + + F G Sbjct: 529 KKMVQIEVLLFEKRLNRDNQFGLNLLRTGNAATNTHTTSVQWNNIFPVGASVVHPENAGV 588 Query: 245 F-----SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----- 294 F K +++ L I+ A P++ AI+ A+ + Sbjct: 589 FEYLVSRTKTASGIPAYDFAYRFLLSQDDIQINASPSVVAINQTPATIEIAEEISVSTGI 648 Query: 295 --YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG--------LRIQTEVSEPVIGVN 344 T + T S YG+ + PT+ + + ++T++ I + Sbjct: 649 FEIPTEGNVTLKDSFARARYGIKIEIIPTIHVREDMNDPEDPVDYVTLETDILFETINPS 708 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P R V +P T+++ GL + ++ KE IP L +IP +G LF ++ Sbjct: 709 VDSRPDVTRRHITNQVRIPDQQTVIIGGLRRKNLSDSKESIPYLGEIPGIGKLFSITQLT 768 Query: 405 REETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFF 444 TE+FI TP ++ A D R ++ D F Sbjct: 769 DSATEMFIFITPKIITEAAEDFDRIRCEEMQRRPGDIPGFL 809 >gi|497225|gb|AAA74040.1| invG [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 563 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 103/260 (39%), Gaps = 25/260 (9%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ L++A + V L + I ++ + L+++G S T + G + Sbjct: 294 LVKALDVA-KRHVELSLWIVDLNKSDLERLGTSWSGTVTI------------GDKLGVSL 340 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + S LD F ++ALE ++ P +T+ SA F + K + Sbjct: 341 NQSSISTLDGSRFIAAVNALEEKKQATVVSAPGITSSGKCSAIFDNNRTFYTKLIGERNV 400 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADT 358 A T YG ++ P + G+I + + E + +P T Sbjct: 401 ALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLIST 458 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +P G ++++ G +D + IP L K+P++G+LFR S N+ F+ Sbjct: 459 IARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN-----VVRVFM 513 Query: 419 VKPVAMRDLSRPDDHYSVED 438 ++P + D PD SV + Sbjct: 514 IEPKEIVDPLTPDASESVNN 533 >gi|107025868|ref|YP_623379.1| Type III secretion system outer membrane pore YscC/HrcC [Burkholderia cenocepacia AU 1054] gi|116692948|ref|YP_838481.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia cenocepacia HI2424] gi|105895242|gb|ABF78406.1| Type III secretion system outer membrane pore YscC/HrcC [Burkholderia cenocepacia AU 1054] gi|116650948|gb|ABK11588.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia cenocepacia HI2424] Length = 681 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 103/283 (36%), Gaps = 44/283 (15%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222 + ++N L+ V + VTI ++ D L +G T Sbjct: 327 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQY 385 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAE 274 + + G + G F G+ S L +AL + + ++ Sbjct: 386 NGVGNPPLTFGIGTSETGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 445 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS--------- 324 P + A+ A + Q + + SVTT G + TP ++ Sbjct: 446 PKVLALDNTEAILENLTQFYVQVPGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAV 502 Query: 325 ---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 P + + I + V G ++P + R T + G ++++AG D+++ Sbjct: 503 SGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLN 562 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 K G+P LS IP++G LF+ + + E F TP +V +M Sbjct: 563 KSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTNASM 605 >gi|320106632|ref|YP_004182222.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] gi|319925153|gb|ADV82228.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] Length = 819 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 79/189 (41%), Gaps = 13/189 (6%) Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----------ATS 306 L A + R L P L + GQ A G + T S ++G T Sbjct: 420 SAALAATLSDSDTRVLQNPRLRSTDGQRAQLKIGQRIPVATGSYNSGVSTGVASVGVQTQ 479 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPS 364 D GV + TPTV I L+++ EVS ++ P R ++ ++L Sbjct: 480 FQYIDIGVQIDLTPTVHQNHEISLKMKIEVSTHANDETISGVVEPVIGQRISEQVIQLKE 539 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVA 423 G +L+G+L G P LS+IP+LG +F N +R TEI P +V+ V Sbjct: 540 GEPSILSGILTKTESDSLGGTPGLSQIPLLGRIFSNKTRDRASTEIVFVLVPHIVRESVL 599 Query: 424 MRDLSRPDD 432 R +RP D Sbjct: 600 TRMNTRPID 608 >gi|312171108|emb|CBX79367.1| Type III secretion system outer membrane pore HrcC [Erwinia amylovora ATCC BAA-2158] Length = 677 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 50/272 (18%), Positives = 92/272 (33%), Gaps = 20/272 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ +++ ++ V + I ++ R L ++ T S + G FVS Sbjct: 297 QLIAKIDVP-QNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-- 353 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D F + ALE +A P++ + Q A ++ Sbjct: 354 ---------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYI--TATGE 402 Query: 303 GATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTV 360 + G L TP V + G +++ ++ + + N + R T Sbjct: 403 RVADIQPVTAGTSLQVTPRAVGNEGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQA 462 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +VL G ++ IPLL IP LG LF + R + + TP L+ Sbjct: 463 LISENRALVLGGFHVEESADRDRRIPLLGDIPWLGQLFSSKRHEISQRQRLFILTPRLIG 522 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 D+ DA RV + + Sbjct: 523 DQTDPTRYVTADNRQQLSDA----MGRVERRH 550 >gi|292487037|ref|YP_003529907.1| type III secretion system outer membrane pore HrcC [Erwinia amylovora CFBP1430] gi|292900578|ref|YP_003539947.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|1336093|gb|AAB49179.1| HrcC [Erwinia amylovora] gi|291200426|emb|CBJ47554.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552454|emb|CBA19499.1| Type III secretion system outer membrane pore HrcC [Erwinia amylovora CFBP1430] Length = 676 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 50/272 (18%), Positives = 92/272 (33%), Gaps = 20/272 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ +++ ++ V + I ++ R L ++ T S + G FVS Sbjct: 296 QLIAKIDVP-QNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-- 352 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D F + ALE +A P++ + Q A ++ Sbjct: 353 ---------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYI--TATGE 401 Query: 303 GATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTV 360 + G L TP V + G +++ ++ + + N + R T Sbjct: 402 RVADIQPVTAGTSLQVTPRAVGNEGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQA 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +VL G ++ IPLL IP LG LF + R + + TP L+ Sbjct: 462 LISENRALVLGGFHVEESADRDRRIPLLGDIPWLGQLFSSKRHEISQRQRLFILTPRLIG 521 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 D+ DA RV + + Sbjct: 522 DQTDPTRYVTADNRQQLSDA----MGRVERRH 549 >gi|325280193|ref|YP_004252735.1| type II and III secretion system protein [Odoribacter splanchnicus DSM 20712] gi|324312002|gb|ADY32555.1| type II and III secretion system protein [Odoribacter splanchnicus DSM 20712] Length = 628 Score = 123 bits (310), Expect = 5e-26, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 103/242 (42%), Gaps = 18/242 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGV 250 +T++V I + ++ L++ G + + + + + F+ G Sbjct: 386 ITIEVLIVDSKKSSLREAGITAGLGEKPVKTAGRLSPGVDFTLSAASVNRLIHSFNGFGS 445 Query: 251 LD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT- 305 ++ +F L ALE A + + P L+ ++G AS SG YK V ++ T Sbjct: 446 VNLGKVTPNFYLTLKALEEAGTLELRSTPKLSTLNGHEASLKSGETRYYKEVQNNIMGTQ 505 Query: 306 ------SVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 S T + + L P V S G+I L I+ E SE P R Sbjct: 506 NPIQSESYTWKSTEADLSLKIVPYVSSDGKITLTIEIEQSEFTAREEKDAPPGTATRSFK 565 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 + + + + ++L G+ ++ ++ G+PL+++IP+L LF S N+ + ++ I P Sbjct: 566 SRIRVDNEDMVLLGGIDRNTREKGSSGLPLIARIPVLKWLFGVSTDNKVDEKLSIFIKPT 625 Query: 418 LV 419 ++ Sbjct: 626 VI 627 >gi|297567918|ref|YP_003686888.1| type II and III secretion system protein [Meiothermus silvanus DSM 9946] gi|296852367|gb|ADH65380.1| type II and III secretion system protein [Meiothermus silvanus DSM 9946] Length = 670 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 23/264 (8%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 Q A ++ ++++ L+ QV L+V + ++ +I ++ S AD Sbjct: 375 PQAAVAAIERLVGDLDRPIP-QVDLQVRVEQLSSSNGDEI----GAALEAALGPLSLKAD 429 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G G + G+L L AL+ A R+L + T SG+S + SGG Sbjct: 430 PGSGQYGLGLEVGKTGLL---KLNAALKALQSAGKGRSLIDSRFTVSSGESVNLLSGGSL 486 Query: 294 LYK-------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-SEPVIGVNA 345 L S T T + ++G+ L TPTV+ +I L + + S P +G N Sbjct: 487 LIPLTSTGTGGSSGGTSTTGLQNVEFGLELKLTPTVIPGDKIQLGVNINLGSAPTVGPNN 546 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + ++ + V L SG + VL G++ + ++ + GIP+L +P++G LF + + Sbjct: 547 STLVP--KQQLTSNVLLSSGNSAVLGGVISVEEKESRSGIPVLMDLPLIGGLFSQTVKSS 604 Query: 406 EETEIFIAAT-----PFLVKPVAM 424 +T + I T P VKP +M Sbjct: 605 SQTHLLIVVTAVSRLPEAVKPASM 628 >gi|83747847|ref|ZP_00944880.1| HrcC [Ralstonia solanacearum UW551] gi|207739230|ref|YP_002257623.1| hrp protein hrcc [Ralstonia solanacearum IPO1609] gi|83725494|gb|EAP72639.1| HrcC [Ralstonia solanacearum UW551] gi|206592603|emb|CAQ59509.1| hrp conserved protein hrcc [Ralstonia solanacearum IPO1609] Length = 567 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 25/246 (10%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240 + +I ++ L+Q+G + S +G + + G S Sbjct: 325 ISASIIDITETALEQLGVDWRLHNSRLDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 384 Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 GG S + AL++ R A P + + A + Sbjct: 385 TPAGGVLSAVIGGGSRYLMARISALQQTNQARVTASPKVATLDNTEAVMDNRQNFYVPVA 444 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + + GV L P V+ G RI + + E + G++P + Sbjct: 445 GYQ--SADLYAISAGVSLRVLPMVVMDGGTVRIRMNVHIE-DGQITSQQVGNLPVTSQSE 501 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 DT + G ++++AG D + + IP LSKIP++GALFR + + + T Sbjct: 502 IDTQALINEGESLLIAGYSVDQQAKTVDAIPGLSKIPLVGALFRTDQTTGQRFQRMFLVT 561 Query: 416 PFLVKP 421 P ++ P Sbjct: 562 PRVITP 567 >gi|206563896|ref|YP_002234659.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|18092668|gb|AAL59397.1| BcscC [Burkholderia cenocepacia] gi|28394249|gb|AAO31724.1| BcscC [Burkholderia cenocepacia] gi|198039936|emb|CAR55914.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 681 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 97/269 (36%), Gaps = 43/269 (15%) Query: 196 VTLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPSKSFAADFGG 236 V + VTI ++ D L +G T + + G Sbjct: 340 VEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQYNGAGNPPLTFGIGT 399 Query: 237 KFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAEPTLTAISGQSASFT 288 + G F G+ S L +AL + + ++P + A+ A Sbjct: 400 SETGQTGAFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILE 459 Query: 289 SGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS------------PGRIGLRIQTE 335 + Q + + SVTT G + TP ++ P + + I + Sbjct: 460 NLTQFYVQVPGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQ 516 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V G ++P + R T + G ++++AG D+++ K G+P LS IP++G Sbjct: 517 DGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIG 576 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424 LF+ + + E F TP +V +M Sbjct: 577 NLFKYTDKSGNHMERFYLLTPRVVTSASM 605 >gi|110639568|ref|YP_679778.1| type II general secretion pathway (GSP) D protein [Cytophaga hutchinsonii ATCC 33406] gi|110282249|gb|ABG60435.1| type II general secretion pathway (GSP) D protein [Cytophaga hutchinsonii ATCC 33406] Length = 656 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 98/246 (39%), Gaps = 21/246 (8%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----------FAADFGGKFVSEGG 243 V ++V I EV ++ + + G + + S + S + F++ G Sbjct: 411 PMVMIEVIIMEVLKNRMVKTGIKAGLNDSLATTQTSGTFLPGLDVKLSTSTINDFINGLG 470 Query: 244 DFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 S+ + SF L ALE + + P L+ ++G A+ + G Y+ + +T Sbjct: 471 IGSITNLGSVTPSFYMTLSALETNNNVEIKSMPKLSTLNGHDANMSIGQTVYYEVQTQNT 530 Query: 303 -------GATSVTTH--DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 T+V L P V ++ L I+ + NA P+ Sbjct: 531 LGSLTTNTITTVQYQSVQANQTLSIKPLVSGDDQVTLTIEVNQTSFAKS-NAAGPPNTTT 589 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + + + + + IVL GL K EG P+LS+IP++ LF + ++ ++ + + Sbjct: 590 SQFKSIIRVRNEEMIVLGGLEKISKSIDTEGTPILSRIPVIKLLFSSKTKSKSKSILVLF 649 Query: 414 ATPFLV 419 P ++ Sbjct: 650 IKPIII 655 >gi|237737584|ref|ZP_04568065.1| general secretion pathway protein D [Fusobacterium mortiferum ATCC 9817] gi|229419464|gb|EEO34511.1| general secretion pathway protein D [Fusobacterium mortiferum ATCC 9817] Length = 551 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 112/281 (39%), Gaps = 30/281 (10%) Query: 169 SQSGRNQYANSSSKKVMNLLNIAGED------QVTLKVTIAEVRRDILKQIGFQH--SIT 220 S +N S + ++N ++ Q+ + I +V ++ + +GF + Sbjct: 246 SLPKKNILVLSGKENIINSSKSLIQELDKDVEQIRIDAQILDVTDNLFETLGFNWIYDNS 305 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV-------LHALERATAIRTLA 273 G++ G + + G +S G + F + ++ LE + + Sbjct: 306 GNTEGNNSWSMSLLGNSSISGIGSIYSSSIAISKQFNSGNDILNLGINLLESTQDLVVSS 365 Query: 274 EPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 P++ + G+ SF + + ++ T+ + G++L TPT+ G + Sbjct: 366 RPSILVLDGEEGSFKVAEEVIVGEQREEDEDTNKVITTPIFREAGIILKATPTIRKDGWV 425 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRV----------RKADTTVELPSGGTIVLAGLLKDDI 378 L++ E+S + VN + R +TT+++ +G TI + GL K + Sbjct: 426 ILKVLIEISNFKLKVNKDESEESGTYNSEGGSKVGRSIETTIKIKNGETIFIGGLKKATV 485 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L IP +P++ F+N + E ++I++ +V Sbjct: 486 HNLDSKIPYFGTLPMINFFFKNQNISHEISDIYVKMKVNIV 526 >gi|238755999|ref|ZP_04617324.1| Possible type III secretion system protein [Yersinia ruckeri ATCC 29473] gi|238705788|gb|EEP98180.1| Possible type III secretion system protein [Yersinia ruckeri ATCC 29473] Length = 558 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 85/241 (35%), Gaps = 21/241 (8%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + QV L + I ++ + L ++G + SI +G G F+ + Sbjct: 297 SSRRQVELSLWIIDISKKKLDEVGVRWSIGDLKAGGG--------------GIAFNQSTL 342 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + F + A+ R + ++ P + A F + + + Sbjct: 343 SNSAKFLARVDAISRTGDAQIVSRPIVLTQENIPALFDNNSSFYARLEGERV--AKLEQV 400 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSG 365 YG ++ P + ++ + + E P + G +P T + Sbjct: 401 TYGTMVSVLPRISQGDQVEMDVNIEDGSPGRAGSNDVDQIGGLPIVNRTNISTVARIAKD 460 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G +D +++ E IPLL IP LG LF N+++ P L+ Sbjct: 461 SSLLIGGYTRDQLEESDEKIPLLGSIPYLGRLFSYRSSNQQKMIRVFLIQPRLLNESESW 520 Query: 426 D 426 D Sbjct: 521 D 521 >gi|289765568|ref|ZP_06524946.1| general secretion pathway protein D [Fusobacterium sp. D11] gi|289717123|gb|EFD81135.1| general secretion pathway protein D [Fusobacterium sp. D11] Length = 423 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 21/248 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV + I ++ ++ +++GF S S A K G +V V Sbjct: 174 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIV 233 Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + T ++ LE + + PTL SG+ F + + + Sbjct: 234 RQFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 293 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 294 RYSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 353 Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E +++ Sbjct: 354 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 413 Query: 411 FIAATPFL 418 +I + Sbjct: 414 YIKLKVEI 421 >gi|149925789|ref|ZP_01914053.1| putative Type II secretory pathway component PulD [Limnobacter sp. MED105] gi|149825906|gb|EDM85114.1| putative Type II secretory pathway component PulD [Limnobacter sp. MED105] Length = 646 Score = 123 bits (308), Expect = 8e-26, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 92/268 (34%), Gaps = 27/268 (10%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + + + Q+ ++ I E+ + + G ++ +G + A G + Sbjct: 291 LTQIQRRVDRQIVIEAVITEISLNDRYERGIDWNVL-RQNGITAGLAVQ-GLNLGNPALT 348 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F+ L LE L+ P + ++ Q+A +Y T T A Sbjct: 349 FNALRNTGNTDTSVALRLLEEFGKTEVLSSPRVVTMNQQAAVLKVIDNRVYFTTDVQTSA 408 Query: 305 ------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----- 347 T V T G ++ TP + I LR++ +S V V + Sbjct: 409 PTQNSPAFSTFTTQVQTVPVGFLMTVTPQIADNNAIQLRVRPTLSRIVGFVQDPNPALQQ 468 Query: 348 ------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 +P + R+ ++ + L SG +L GL + + L GIP + + + ++ Sbjct: 469 LNIISRVPEVQTRELESILRLKSGEMALLGGLRQKENSSLSRGIPGAPE--SVDLITQSK 526 Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSR 429 E+ + +++ L Sbjct: 527 NRGESHIELVVLLKATVLESATANQLQT 554 >gi|322646886|gb|EFY43389.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|323203179|gb|EFZ88208.1| type III secretion outer membrane pore, YscC/HrcC family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 456 Score = 123 bits (308), Expect = 9e-26, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 99/260 (38%), Gaps = 25/260 (9%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ L++A + V L + I ++ + L+++G S + G + Sbjct: 187 LVKALDVA-KRHVELSLWIVDLNKSDLERLGTSWS------------GSITIGDKLGVSL 233 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + + LD F ++ALE ++ P L A F + K + Sbjct: 234 NQASISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNV 293 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADT 358 A T YG ++ P + G+I + + E + +P T Sbjct: 294 ALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLIST 351 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +P G ++++ G +D + IP L K+P++G+LFR S N+ F+ Sbjct: 352 IARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSN-----VVRVFM 406 Query: 419 VKPVAMRDLSRPDDHYSVED 438 ++P + D PD SV + Sbjct: 407 IEPKEIVDPLTPDASESVNN 426 >gi|218440223|ref|YP_002378552.1| type II and III secretion system protein [Cyanothece sp. PCC 7424] gi|218172951|gb|ACK71684.1| type II and III secretion system protein [Cyanothece sp. PCC 7424] Length = 734 Score = 123 bits (308), Expect = 9e-26, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 14/180 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----H 310 F L A + + L +PTL GQ A+ + + + + V T Sbjct: 525 FLLTLEAQITSGNAKILTDPTLVVQEGQQATVKLTQKVVESVNTQVDPLSGVRTTTPVLQ 584 Query: 311 DYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGV-------NAGDMPSYRVRKADT-TVE 361 D G+ L + G + L + ++ P + R+ + + Sbjct: 585 DAGLTLTVEVDRIDDNGFVSLFVSPTIAAPGASQEFESGDGTTNQLTLLTRRELTSGLIR 644 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G T++L+G++ + Q +P+L IPILGALFR + + +E+ + TP ++ Sbjct: 645 MRDGQTLILSGIISESEQTTVSKVPILGDIPILGALFRRTDNSGSRSEVIVLLTPKIIDD 704 >gi|167615514|ref|ZP_02384149.1| type II/III secretion system protein [Burkholderia thailandensis Bt4] Length = 309 Score = 123 bits (308), Expect = 9e-26, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 13/226 (5%) Query: 205 VRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETV 259 V + Q+S + P S S A + + S+ VL Sbjct: 88 VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 147 Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHF 318 + ALE + RT A P +T + A + Q + +S S++T GV L Sbjct: 148 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRV 204 Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 P V+ G +I L ++ V + ++P + +T + G +++AG Sbjct: 205 LPMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKV 263 Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 D + G+P+LSK+P+LGALFR++ +E TP +++P Sbjct: 264 DARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 309 >gi|167566263|ref|ZP_02359179.1| type II/III secretion system protein [Burkholderia oklahomensis EO147] Length = 311 Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 33/241 (13%) Query: 210 LKQIGFQH-------------SITGSSSGPSKSFAADFGGKFVSEGGD----------FS 246 LKQ+G +T +S + S FG +S GD S Sbjct: 75 LKQLGVDWRAHNSHIDLQTGTGLTAQNSYANGSLNPTFGSISLSGNGDSVGVPASPLGLS 134 Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SSTG 303 + VL ++ALE + RT A P +T + A + Q + +S Sbjct: 135 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 194 Query: 304 ATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 S++T GV L P V+ G +I L ++ V + ++P + +T Sbjct: 195 LYSIST---GVSLRVLPMVVEEGGHTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQA 250 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G +++AG D G+P+LSK+P++GALFR++ TE TP +++ Sbjct: 251 FIEQGQALLIAGYKVDSRSSTLSGVPVLSKLPLVGALFRSTDKQDSHTERLFLVTPRVIE 310 Query: 421 P 421 P Sbjct: 311 P 311 >gi|67639552|ref|ZP_00438400.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei GB8 horse 4] gi|238520110|gb|EEP83573.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei GB8 horse 4] Length = 380 Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 175 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 234 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 235 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGCTQIKLD 291 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 292 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 350 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 351 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 380 >gi|170698153|ref|ZP_02889232.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] gi|170136918|gb|EDT05167.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] Length = 619 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 109/274 (39%), Gaps = 17/274 (6%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G+ + + RAV +T +++ L+I+ + Q+ L + I ++++ Sbjct: 324 TGIAVSAETDVRAVAYPDTNSIVLTGPLDKVQDMTSLIHSLDIS-KRQIQLSLWIIDIKK 382 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L Q+G S+ S SF G D S LD F + AL++ Sbjct: 383 SCLDQLGVNWQGVFGSNRISGSF----------NGADNSTT--LDGPKFLVSVMALQQKG 430 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P L A F + K + A S+ YG +++ P + G Sbjct: 431 DATIVSRPVLLTQENMPAVFDNNQTFYAKLIGER--AVSLEHVTYGTMINVLPRLTDNGS 488 Query: 328 -IGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + +++ E +A +P + DT +P ++++ G +DD ++ + I Sbjct: 489 EVEMQVDVEDGNATDTNDAASPLPLVDRTEIDTVARVPREKSLLIGGNTRDDARRHRYRI 548 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P L+ +P++G LFR + ++ P ++ Sbjct: 549 PGLASLPLIGGLFRWRTESHDQVVRVFLIQPKVL 582 >gi|259909699|ref|YP_002650055.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcC protein [Erwinia pyrifoliae Ep1/96] gi|224965321|emb|CAX56853.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcC protein [Erwinia pyrifoliae Ep1/96] gi|283479785|emb|CAY75701.1| Type III secretion system outer membrane pore HrcC [Erwinia pyrifoliae DSM 12163] Length = 676 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 92/272 (33%), Gaps = 20/272 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ +++ ++ V + I ++ R L ++ T S + G FVS Sbjct: 296 QLIAKIDVP-QNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-- 352 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D F + ALE +A P++ + Q A ++ Sbjct: 353 ---------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYI--TATGE 401 Query: 303 GATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTV 360 + G L TP V + G +++ ++ + + N + R T Sbjct: 402 RVADIQPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQA 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +VL G ++ IPLL IP +G LF + R + + TP L+ Sbjct: 462 LISENRALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIG 521 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 D+ DA RV + + Sbjct: 522 DQTDPTRYVTADNRQQLSDA----MGRVERRH 549 >gi|34762860|ref|ZP_00143844.1| General secretion pathway protein D [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887468|gb|EAA24554.1| General secretion pathway protein D [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 423 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 91/248 (36%), Gaps = 21/248 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV + I ++ ++ +++GF + ++ G S ++ Sbjct: 174 NPKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGLNGVGSTVNIV 233 Query: 252 DRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 +F ++ LE + + PTL SG+ F + + + Sbjct: 234 RQFHNKSDVLSVGINLLEATNDLVVSSVPTLLIASGEEGEFKVTEEVVVGIKTHREDKKD 293 Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--------- 353 + + G+++ P + I L I E+S+ N ++ Sbjct: 294 RYSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGS 353 Query: 354 ---RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R T V + +G TI+L GL K Q ++ IP+L IPI+ F+N+ E +++ Sbjct: 354 KVGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDM 413 Query: 411 FIAATPFL 418 +I + Sbjct: 414 YIKLKVEI 421 >gi|266635497|gb|ABA39798.2| HrcC [Erwinia pyrifoliae] Length = 676 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 92/272 (33%), Gaps = 20/272 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ +++ ++ V + I ++ R L ++ T S + G FVS Sbjct: 296 QLIAKIDVP-QNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-- 352 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D F + ALE +A P++ + Q A ++ Sbjct: 353 ---------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYI--TATGE 401 Query: 303 GATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTV 360 + G L TP V + G +++ ++ + + N + R T Sbjct: 402 RVADIQPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQA 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +VL G ++ IPLL IP +G LF + R + + TP L+ Sbjct: 462 LISENRALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIG 521 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 D+ DA RV + + Sbjct: 522 DQTDPTRYVTADNRQQLSDA----MGRVERRH 549 >gi|289804850|ref|ZP_06535479.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 230 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 10/229 (4%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 + + V I +V + Q+G S G +F G + D Sbjct: 1 MIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTS 56 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 +F L+ALE+++ L++P++ ++ A + T + + G Sbjct: 57 NFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTKLQGEKVAKLESITTGS 114 Query: 315 VLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVL 370 +L TP +L+ +I L + + + + D +P + + + L +G +++L Sbjct: 115 LLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLL 174 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G + + IPLL IP++G LFRN +V Sbjct: 175 GGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVV 223 >gi|254412671|ref|ZP_05026444.1| Bacterial type II and III secretion system protein [Microcoleus chthonoplastes PCC 7420] gi|196180406|gb|EDX75397.1| Bacterial type II and III secretion system protein [Microcoleus chthonoplastes PCC 7420] Length = 979 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 86/214 (40%), Gaps = 18/214 (8%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307 F L A + + L +PT+ GQ+A+ + + S + T + Sbjct: 767 DFLAQLQAQITSGNAKILTDPTIVVQEGQTATVNLTQEVVGNIRSETESADGLTTRTVTA 826 Query: 308 TTHDYGVVLH-FTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADT-T 359 + G++L + G + L + EV+ IG + + R+ + Sbjct: 827 EIREAGLILELIVDRIDDNGFVTLAVNPEVTSIGSVQNLSIGDDTNQIALLNTRELTSGQ 886 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T++L+G++++ + +P+L +PILGALFR++ + E+ + TP ++ Sbjct: 887 IRLRDGQTLILSGIIQESDRTTVRKVPILGDLPILGALFRSTERQNQRQEVIVLLTPQIL 946 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 +Y+ +A+ R G Sbjct: 947 DDSERGAF---GYNYTPGREAQEVLQRRGFPTQG 977 >gi|307149984|ref|YP_003885368.1| type II and III secretion system protein [Cyanothece sp. PCC 7822] gi|306980212|gb|ADN12093.1| type II and III secretion system protein [Cyanothece sp. PCC 7822] Length = 728 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 14/180 (7%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----H 310 F L A + + L +PTL GQ A+ + + + + V T Sbjct: 519 FLATLQASITSGNAKILTDPTLVVQEGQQATVKLTQKVVESVNTQVDPLSGVRTTTPVLQ 578 Query: 311 DYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGVN-------AGDMPSYRVRKADT-TVE 361 D G+ L + G + L + ++ P + R+ + + Sbjct: 579 DAGLTLTVEVDRIDDNGFVSLFVSPTIAAPGATQTFDSGNGSNNTLTLLSRREMTSGLIR 638 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G T++L+G++ + + +P+L IPILGALFR + N +E+ + TP ++ Sbjct: 639 MRDGQTLILSGIISETERTTVTKVPILGDIPILGALFRRTDNNGNRSEVIVLLTPKIIDD 698 >gi|310766437|gb|ADP11387.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcC protein [Erwinia sp. Ejp617] Length = 676 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 92/272 (33%), Gaps = 20/272 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ +++ ++ V + I ++ R L ++ T S + G FVS Sbjct: 296 QLIAKIDVP-QNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-- 352 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D F + ALE +A P++ + Q A ++ Sbjct: 353 ---------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYI--TATGE 401 Query: 303 GATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTV 360 + G L TP V + G +++ ++ + + N + R T Sbjct: 402 RVADIQPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQA 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +VL G ++ IPLL IP +G LF + R + + TP L+ Sbjct: 462 LISENRALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIG 521 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 D+ DA RV + + Sbjct: 522 DQTDPTRYVTADNRQQLSDA----MGRVERRH 549 >gi|3228547|gb|AAC34756.1| HrcC [Pseudomonas syringae pv. tomato] Length = 700 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 89/246 (36%), Gaps = 15/246 (6%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + +K++ L++ + + I ++ + L ++ SS + AA G Sbjct: 303 KAMYQKLVKELDVPRNL-IEIDAVILDIDPNELAEL--------SSRLEFQCPAASEVGA 353 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + +GG S + + F LHALE + +A P++ + Q A Sbjct: 354 NLFDGGTSSTLFLQNASKFSAELHALEGNGSASVIANPSILTLENQPAVIDLSRTEYLTP 413 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVR 354 S A + G L P L ++ + + E + + PS R Sbjct: 414 TSER--AADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRG 471 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + IPLL IP +G LF++ + E Sbjct: 472 NVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFI 531 Query: 414 ATPFLV 419 TP L+ Sbjct: 532 LTPRLI 537 >gi|170698370|ref|ZP_02889444.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] gi|170136709|gb|EDT04963.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria IOP40-10] Length = 589 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 6/222 (2%) Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 +V+ ++ T S + + A + G + + A Sbjct: 371 IDVQTGTGTLGQSTYNGTLSQNFGQTALAGNVLAAATPVGASVAAVLGDAGRYLMARISA 430 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTP- 320 L+ A + A P + ++ A + Q ++G SV+T G+ L P Sbjct: 431 LQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRVLPM 487 Query: 321 TVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 V GR +++ + + ++P + +T + G +++AG D Sbjct: 488 VVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFIEEGQALLIAGYRADSAT 547 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G+P LSKIP++GALFR + E +P ++ P Sbjct: 548 MGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 589 >gi|330882763|gb|EGH16912.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 215 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 10/207 (4%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 ++ G + + + + +L V V+V++P AD+ V SP +Y+FG+ GQ ++I Sbjct: 19 NIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGQAAGQTSLI 78 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 + DG++ L + + A + L+ S R+ V+ G V+ + ++ Sbjct: 79 ALDSDGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDL 138 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 L LS G+N + +N AG QV ++V AEV R L + G + Sbjct: 139 NAL----LSTEGQNF------QSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNAL 188 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSV 247 ++ S + GG +V Sbjct: 189 FNNGTFSFGLLTGGALAADAAGGASNV 215 >gi|153848715|ref|ZP_01993991.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810] gi|149744675|gb|EDM56143.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810] Length = 132 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 67/132 (50%) Query: 37 INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96 +++ G+ +S+ ++ L + + V + DP D+VV ++L GK +G Sbjct: 1 MSVHAATAQSGRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNELFLIGKKLGT 60 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156 NV + G+ + ++ + D+ L+ L +F+ D +I V + VVL G+V + Q+ Sbjct: 61 TNVSVWDSRGRLIEQFNVEVTHDLNTLKSKLFQFLPDESIEVHSAQEKVVLRGLVSSQQN 120 Query: 157 SQRAVELSETFL 168 AV+++ETF Sbjct: 121 MDIAVKIAETFA 132 >gi|170737787|ref|YP_001779047.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia cenocepacia MC0-3] gi|169819975|gb|ACA94557.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia cenocepacia MC0-3] Length = 681 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 97/269 (36%), Gaps = 43/269 (15%) Query: 196 VTLKVTIAEVRRDILKQIGFQH-------------------SITGSSSGPSKSFAADFGG 236 V + VTI ++ D L +G T + + G Sbjct: 340 VEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQYNGVGNPPLTFGIGT 399 Query: 237 KFVSEGGDFSVKGVLDRFSFETVL--------HALERATAIRTLAEPTLTAISGQSASFT 288 + G F G+ S L +AL + + ++P + A+ A Sbjct: 400 SETGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILE 459 Query: 289 SGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLS------------PGRIGLRIQTE 335 + Q + + SVTT G + TP ++ P + + I + Sbjct: 460 NLTQFYVQVPGYQDSSLYSVTT---GTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQ 516 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 V G ++P + R T + G ++++AG D+++ K G+P LS IP++G Sbjct: 517 DGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNKSGVPWLSDIPLIG 576 Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424 LF+ + + E F TP +V +M Sbjct: 577 NLFKYTDKSGNHMERFYLLTPRVVTNASM 605 >gi|167907227|ref|ZP_02494432.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei NCTC 13177] Length = 327 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 8/209 (3%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 122 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 181 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRI 332 +T + A + Q + + + + + GV L P V+ G +I L + Sbjct: 182 KVTTLDNVEAVMDNKKQFFVRVAGYT--SADLYSISTGVSLRVLPMVVDEGGRTQIKLDV 239 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + V + ++P + +T + G +++AG D + G+P+LSK+P Sbjct: 240 RI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKLP 298 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKP 421 ++GALFR++ +E TP +++P Sbjct: 299 LVGALFRSTDKQNSHSERLFLVTPRVIEP 327 >gi|254508151|ref|ZP_05120276.1| fimbrial assembly protein [Vibrio parahaemolyticus 16] gi|219548873|gb|EED25873.1| fimbrial assembly protein [Vibrio parahaemolyticus 16] Length = 553 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 98/288 (34%), Gaps = 76/288 (26%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGGKFV 239 + +++ L+I QV ++ I V L ++G + T ++ + S ++ + Sbjct: 290 RDIIDTLDIP-VKQVQIEARIVSVNEGNLDELGVRWGFTSTNGNNTVGGSIESNLFQAGL 348 Query: 240 SEGGDFSVKGVLDRFSFETVLHA----------------------LERATAIRTLAEPTL 277 EG + V L+ T A L+R + ++ P L Sbjct: 349 LEGDNLPVDDFLNVNLGATSATASSIAFQVAKLGSDLLLDLELSALQRESKAEVISSPRL 408 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 + + A G + Y SSS+GAT+VT + L TP + R+ L + Sbjct: 409 ITTNKKPAYIEQGTEIPYLE-SSSSGATTVTFKKAVLSLKVTPQITPDNRLVLDLNVTQD 467 Query: 338 EP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 P V+ G+ + ++ T V + +G T+VL G+ Sbjct: 468 RPGDVVKTGTGEAVAINTQRIGTQVLVENGETVVLGGI---------------------- 505 Query: 396 ALF------------------------RNSRFNREETEIFIAATPFLV 419 F R S ++E+ I TP +V Sbjct: 506 --FQHSVTDTVDKVPLLGDLPLLGALFRRSYQQMGKSELLIFVTPKVV 551 >gi|167724326|ref|ZP_02407562.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei DM98] Length = 308 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 103 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 162 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 163 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 219 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 220 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 278 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 279 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 308 >gi|323978511|gb|EGB73593.1| YscC/HrcC family protein type III secretion outer membrane pore [Escherichia coli TW10509] Length = 567 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 80/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + V+D T + + + G Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204 Query: 96 QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147 A V L+ ++ KQ +++L E + R D +++VE + T Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T A + + L + +Q +K++ L+I + + L + I ++ + Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L+Q+G S + + F + G LD F + AL + Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P + A F + K V T + YG ++ P S + Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFASRNQ 425 Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + N D+P T +P G ++++ G +D I Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+L IP +G LF N FL++P + + Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521 >gi|167820470|ref|ZP_02452150.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 91] gi|167828842|ref|ZP_02460313.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 9] Length = 315 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 110 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 169 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 170 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 226 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 227 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 285 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 286 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 315 >gi|167915591|ref|ZP_02502682.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 112] Length = 322 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 117 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 176 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 177 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 233 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 234 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 292 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 293 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 322 >gi|78186891|ref|YP_374934.1| Type II secretory pathway component PulD-like [Chlorobium luteolum DSM 273] gi|78166793|gb|ABB23891.1| Type II secretory pathway component PulD-like protein [Chlorobium luteolum DSM 273] Length = 588 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 102/250 (40%), Gaps = 20/250 (8%) Query: 189 NIAGEDQVTLKVTIA----EVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKF----- 238 N+ D V + I E+ + S+ G+SS P+ SF + + Sbjct: 253 NLPMPDMVIIDAVILRNEDEITHSKGVNLLNGLSLQFGNSSNPAISFNRAYSSSWTHNPD 312 Query: 239 -----VSEGGDFSVKGVLDRFSFETVLHALE-RATAIRTLAEPTLTAISGQSASFTSGGQ 292 +++ ++ G++ + ++ ++ I +A PTLT + + F SG Q Sbjct: 313 GTDDTIAKSITNTITGIISVPALTYSMNIFNMGSSKIDVIARPTLTGMLNIDSEFFSGNQ 372 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDM 348 S+ + + GV +H P ++ ++ L ++ S + M Sbjct: 373 IDAAVAGSADSSPISINKEIGVTMHVRPNEITRNKVKLHVEVSRSFLDTTDKDKITYQYM 432 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + K T V++ G T++L+GL + + ++G+P+L IP+L LF + Sbjct: 433 VTTSNTKVTTDVDIAFGETMILSGLYEREAVDTRDGVPILQDIPLLQYLFSKKTERLFQR 492 Query: 409 EIFIAATPFL 418 + I TP++ Sbjct: 493 SVIILLTPYI 502 >gi|227357599|ref|ZP_03841952.1| type III secretion system protein [Proteus mirabilis ATCC 29906] gi|227162309|gb|EEI47313.1| type III secretion system protein [Proteus mirabilis ATCC 29906] Length = 571 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 95/277 (34%), Gaps = 23/277 (8%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 ++ + +++ L+ + QV + + I ++ + +G + S + F Sbjct: 298 KTSREGLALVSSLISQLDKP-KRQVEMSLWIIDISKSKADSLGVNWQGSYGSGKNTFFF- 355 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + + + FSF + + AL + ++ P L A F + Sbjct: 356 ------------NTASLSAVSGFSFLSKIKALSEEGEAKMVSRPILLTQENTPAIFDNNT 403 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTV-LSPGRIGLRIQTEVSEPVIGVNAG---- 346 + + TT +G ++ P + + I + I E + Sbjct: 404 TFYTQIKGERVASLESTT--FGTMISVLPRISNTNQEIEMIINLEDGAEKKSDDEDREEG 461 Query: 347 --DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P T + GG++++ G ++D + + IP LS IP++G F N Sbjct: 462 IEKLPVINRTNISTVARVSEGGSLLIGGYTREDNIKAENRIPFLSAIPLVGRAFSYQSDN 521 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441 ++ P L+ L +H + D K Sbjct: 522 NKKMVRIFMLQPRLLDKTDTHGLDSLTEHPFLPMDKK 558 >gi|294507285|ref|YP_003571343.1| general secretion pathway protein D [Precursor] [Salinibacter ruber M8] gi|294343613|emb|CBH24391.1| Probable general secretion pathway protein D [Precursor] [Salinibacter ruber M8] Length = 473 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 19/213 (8%) Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 +++A F S + F L+ +E+ RT+A P +T SG+ Sbjct: 213 QNYAIQTENLFESVDNILQAPDQISLSQFRRFLNLVEQDNVGRTVANPQVTVQSGEQGEI 272 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-----------GRIGLRIQTEV 336 G +T + G T G+++ TPT+LS I L + E Sbjct: 273 QIGQDVPIQT-TDFAGNTVTEFFSTGIIIDVTPTLLSQPVADTSGAPVLDFIHLNVDVED 331 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP---- 392 S +G P +A T + L + GL+ + G+P+L +P Sbjct: 332 SN---SQPSGSGPIINRNQASTQILLLDNEATAIGGLISTQKTTRRSGVPILKDLPGWVF 388 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 L +F + N + E+ I +V P+ R Sbjct: 389 GLRYIFGSETTNVTKQELLIVLRAEIVDPLRAR 421 >gi|218706369|ref|YP_002413888.1| protein invG [Escherichia coli UMN026] gi|293406360|ref|ZP_06650286.1| invG [Escherichia coli FVEC1412] gi|293412219|ref|ZP_06654942.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B354] gi|298382096|ref|ZP_06991693.1| type III secretion protein SctC [Escherichia coli FVEC1302] gi|300896248|ref|ZP_07114795.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 198-1] gi|331674348|ref|ZP_08375108.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli TA280] gi|62085071|gb|AAX62936.1| putative type III secretion apparatus protein [Escherichia coli] gi|218433466|emb|CAR14368.1| Protein invG precursor [Escherichia coli UMN026] gi|284922811|emb|CBG35899.1| type III secretion system protein [Escherichia coli 042] gi|291426366|gb|EFE99398.1| invG [Escherichia coli FVEC1412] gi|291468990|gb|EFF11481.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B354] gi|298277236|gb|EFI18752.1| type III secretion protein SctC [Escherichia coli FVEC1302] gi|300359869|gb|EFJ75739.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 198-1] gi|331068442|gb|EGI39837.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli TA280] Length = 567 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 80/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + V+D T + + + G Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204 Query: 96 QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147 A V L+ ++ KQ +++L E + R D +++VE + T Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T A + + L + +Q +K++ L+I + + L + I ++ + Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L+Q+G S + + F + G LD F + AL + Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P + A F + K V T + YG ++ P S + Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFASRNQ 425 Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + N D+P T +P G ++++ G +D I Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+L IP +G LF N FL++P + + Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521 >gi|134282090|ref|ZP_01768796.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] gi|134246619|gb|EBA46707.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 305] Length = 625 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 382 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 430 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608 >gi|126457615|ref|YP_001076120.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1106a] gi|226195991|ref|ZP_03791577.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|242310941|ref|ZP_04809958.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] gi|254186863|ref|ZP_04893379.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|126231383|gb|ABN94796.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106a] gi|157934547|gb|EDO90217.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pasteur 52237] gi|225931884|gb|EEH27885.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei Pakistan 9] gi|242134180|gb|EES20583.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1106b] Length = 625 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 382 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 430 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608 >gi|323966662|gb|EGB62094.1| YscC/HrcC family protein type III secretion outer membrane pore [Escherichia coli M863] Length = 567 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 80/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + V+D T + + + G Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204 Query: 96 QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147 A V L+ ++ KQ +++L E + R D +++VE + T Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T A + + L + +Q +K++ L+I + + L + I ++ + Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L+Q+G S + + F + G LD F + AL + Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P + A F + K V T + YG ++ P S + Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFASRNQ 425 Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + N D+P T +P G ++++ G +D I Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+L IP +G LF N FL++P + + Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521 >gi|167743291|ref|ZP_02416065.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 14] gi|167850302|ref|ZP_02475810.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei B7210] gi|167898903|ref|ZP_02486304.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 7894] Length = 318 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 113 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 172 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 173 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 229 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 230 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 288 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 289 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 318 >gi|172064938|ref|YP_001815650.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia ambifaria MC40-6] gi|171997180|gb|ACB68097.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria MC40-6] Length = 589 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 6/222 (2%) Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 +V+ ++ T S + + A + G + + A Sbjct: 371 IDVQTGTGTLGQNTYNGTLSQNFGQTALAGNVLAAATPVGASVAAVLGDAGRYLMARISA 430 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTP- 320 L+ A + A P + ++ A + Q ++G SV+T G+ L P Sbjct: 431 LQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRVLPM 487 Query: 321 TVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 V GR +++ + + ++P + +T + G +++AG D Sbjct: 488 VVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFIEEGQALLIAGYRADTAT 547 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G+P LSKIP++GALFR + E +P ++ P Sbjct: 548 MGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 589 >gi|167923433|ref|ZP_02510524.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei BCC215] Length = 319 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEP 275 + T + + S + + + + S+ VL ++ALE + RT A P Sbjct: 114 NGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASP 173 Query: 276 TLTAISGQSASFTSGGQHLYKTVS-SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331 +T + A + Q + +S S++T GV L P V+ G +I L Sbjct: 174 KVTTLDNVEAVMDNKKQFFVRVAGYTSADLYSIST---GVSLRVLPMVVDEGGRTQIKLD 230 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ V + ++P + +T + G +++AG D + G+P+LSK+ Sbjct: 231 VRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGVPVLSKL 289 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKP 421 P++GALFR++ +E TP +++P Sbjct: 290 PLVGALFRSTDKQNSHSERLFLVTPRVIEP 319 >gi|53722566|ref|YP_111551.1| Type III secretion system protein [Burkholderia pseudomallei K96243] gi|52212980|emb|CAH39018.1| Type III secretion system protein [Burkholderia pseudomallei K96243] Length = 620 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 318 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 376 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 377 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 425 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 426 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 483 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 484 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 543 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 544 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 603 >gi|254264759|ref|ZP_04955624.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] gi|254215761|gb|EET05146.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710a] Length = 620 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 318 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 376 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 377 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 425 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 426 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 483 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 484 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 543 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 544 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 603 >gi|217425200|ref|ZP_03456695.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] gi|217391805|gb|EEC31832.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 576] Length = 624 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 322 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 380 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 381 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 429 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 430 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 487 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 488 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 547 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 548 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 607 >gi|237508896|ref|ZP_04521611.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] gi|254185160|ref|ZP_04891749.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] gi|184215752|gb|EDU12733.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1655] gi|235001101|gb|EEP50525.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei MSHR346] Length = 625 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 382 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 430 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608 >gi|254253701|ref|ZP_04947018.1| type II and III secretion system protein [Burkholderia dolosa AUO158] gi|124898346|gb|EAY70189.1| type II and III secretion system protein [Burkholderia dolosa AUO158] Length = 620 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 6/222 (2%) Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 +V+ ++ T S + + + G + + A Sbjct: 402 IDVQTGTGTLAQSTYNGTLSQNFGQTALPGNVLAAATPVGASVAAVLGDAGRYLMARISA 461 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTP- 320 L++ A + A P + ++ A + Q ++G SV+T G+ L P Sbjct: 462 LQQTKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRVLPM 518 Query: 321 TVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 V GR +++ + + ++P + +T + G +++AG D Sbjct: 519 VVEEDGRTRIKLDVAIQDGQLTDQTVSNLPVIQNSTINTQAFIEEGQALLIAGYRADSAT 578 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G+P LSKIP++GALFR + E +P ++ P Sbjct: 579 MGVTGVPGLSKIPLIGALFRTDNRQKSHMERLFLLSPRVISP 620 >gi|115360614|ref|YP_777751.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia ambifaria AMMD] gi|115285942|gb|ABI91417.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia ambifaria AMMD] Length = 561 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 6/222 (2%) Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 +V+ ++ T S + + A + G + + A Sbjct: 343 IDVQTGTGTLGQNTYNGTLSQNFGQTALAGNVLAAATPVGASVAAVLGDAGRYLMARISA 402 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTP- 320 L+ A + A P + ++ A + Q ++G SV+T G+ L P Sbjct: 403 LQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGDLYSVST---GISLRVLPM 459 Query: 321 TVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 V GR +++ + + ++P + +T + G +++AG D Sbjct: 460 VVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFIEEGQALLIAGYRADSAT 519 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 G+P LSKIP++GALFR + E +P ++ P Sbjct: 520 MGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 561 >gi|67639412|ref|ZP_00438272.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei GB8 horse 4] gi|124382842|ref|YP_001025856.1| type III secretion system protein BsaO [Burkholderia mallei NCTC 10229] gi|126445673|ref|YP_001077941.1| type III secretion system protein BsaO [Burkholderia mallei NCTC 10247] gi|254175971|ref|ZP_04882629.1| type III secretion system protein BsaO [Burkholderia mallei ATCC 10399] gi|254359082|ref|ZP_04975354.1| type III secretion system protein BsaO [Burkholderia mallei 2002721280] gi|126238527|gb|ABO01639.1| type III secretion system protein BsaO [Burkholderia mallei NCTC 10247] gi|148028269|gb|EDK86229.1| type III secretion system protein BsaO [Burkholderia mallei 2002721280] gi|160697013|gb|EDP86983.1| type III secretion system protein BsaO [Burkholderia mallei ATCC 10399] gi|238519949|gb|EEP83414.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia mallei GB8 horse 4] Length = 625 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 382 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 430 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608 >gi|126442335|ref|YP_001063169.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 668] gi|126221826|gb|ABN85331.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 668] Length = 617 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 315 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 373 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 374 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 422 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 423 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 480 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 481 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 540 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 541 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 600 >gi|254301448|ref|ZP_04968892.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] gi|157811001|gb|EDO88171.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 406e] Length = 625 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 382 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 430 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608 >gi|291284183|ref|YP_003501001.1| putative type III secretion apparatus protein [Escherichia coli O55:H7 str. CB9615] gi|290764056|gb|ADD58017.1| Putative type III secretion apparatus protein [Escherichia coli O55:H7 str. CB9615] Length = 567 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + V+D T + + + G Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204 Query: 96 QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147 A V L+ ++ KQ +++L E + R D +++VE + T Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T A + + L + +Q +K++ L+I + + L + I ++ + Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L+Q+G S + + F + G LD F + AL + Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P + A F + K V T + YG ++ P + + Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425 Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + N D+P T +P G ++++ G +D I Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+L IP +G LF N FL++P + + Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521 >gi|320662066|gb|EFX29467.1| type III secretion system outer membrane pore InvG [Escherichia coli O55:H7 str. USDA 5905] Length = 567 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + V+D T + + + G Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204 Query: 96 QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147 A V L+ ++ KQ +++L E + R D +++VE + T Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T A + + L + +Q +K++ L+I + + L + I ++ + Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L+Q+G S + + F + G LD F + AL + Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P + A F + K V T + YG ++ P + + Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425 Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + N D+P T +P G ++++ G +D I Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+L IP +G LF N FL++P + + Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521 >gi|187919918|ref|YP_001888949.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia phytofirmans PsJN] gi|187718356|gb|ACD19579.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia phytofirmans PsJN] Length = 637 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 85/238 (35%), Gaps = 13/238 (5%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGVL 251 V + + ++ D +G S + ++ ++ Sbjct: 335 VEITAVVIDITSDAASDLGIHWGGATRGGAGGYAVMNSSPTVLASSLIPALAGLNLATMI 394 Query: 252 DRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 + +H LE++ R L+ P + ++ A +S + + + Sbjct: 395 GSSANYLFAKIHLLEQSGKARILSRPQVLTLNNSEAILSSRNSLYVRVAGNQD--VDLYN 452 Query: 310 HDYGVVLHFTPTVLSPG----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 D G+ L TPTV S I L +Q + ++ +P T + G Sbjct: 453 VDTGLTLKVTPTVESGSDSARNILLSVQIDDGAFDSSLSVDGIPKVNNHSIVTQAVVADG 512 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 +++L G + Q + +L +P +GALFR+++ E E I TP VKP+ Sbjct: 513 ESLLLGGYEYERSQTASSQVHVLGHLPYVGALFRDTQTQVERLERLILITPR-VKPMV 569 >gi|188532685|ref|YP_001906482.1| HrcC protein (hrp cluster) [Erwinia tasmaniensis Et1/99] gi|188027727|emb|CAO95580.1| HrcC protein (hrp cluster) [Erwinia tasmaniensis Et1/99] Length = 676 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 92/272 (33%), Gaps = 20/272 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++ +++ ++ V + I ++ R L ++ T S + G FVS Sbjct: 296 QLIGKIDVP-QNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-- 352 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D F + ALE +A P++ + Q A ++ Sbjct: 353 ---------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYI--TATGE 401 Query: 303 GATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTV 360 + G L TP V G +++ ++ + + N + R T Sbjct: 402 RVADIQPVTAGTSLQVTPRAVGYEGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQA 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + +VL G ++ IPLL IP +G LF ++R + + TP L+ Sbjct: 462 LIGENRALVLGGFHVEESGDRDRRIPLLGDIPWIGKLFTSTRHEISQRQRLFILTPRLIG 521 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452 D+ DA RV + + Sbjct: 522 DQTDPTRYVTADNRQQLSDA----MGRVERRH 549 >gi|293416115|ref|ZP_06658755.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B185] gi|291432304|gb|EFF05286.1| YscC/HrcC family type III secretion outer membrane pore [Escherichia coli B185] Length = 567 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + V+D T + + + G Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIII-----PG 204 Query: 96 QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147 A V L+ ++ KQ +++L E + R D +++VE + T Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T A + + L + +Q +K++ L+I + + L + I ++ + Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L+Q+G S + + F + G LD F + AL + Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P + A F + K V T + YG ++ P + + Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425 Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + N D+P T +P G ++++ G +D I Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+L IP +G LF N FL++P + + Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521 >gi|15803397|ref|NP_289430.1| type III secretion apparatus protein [Escherichia coli O157:H7 EDL933] gi|15832987|ref|NP_311760.1| EivG [Escherichia coli O157:H7 str. Sakai] gi|168747661|ref|ZP_02772683.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4113] gi|168753799|ref|ZP_02778806.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4401] gi|168759989|ref|ZP_02784996.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4501] gi|168766854|ref|ZP_02791861.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4486] gi|168775738|ref|ZP_02800745.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4196] gi|168778875|ref|ZP_02803882.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4076] gi|168785707|ref|ZP_02810714.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC869] gi|168799994|ref|ZP_02825001.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC508] gi|195936479|ref|ZP_03081861.1| EivG [Escherichia coli O157:H7 str. EC4024] gi|208807740|ref|ZP_03250077.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4206] gi|208812874|ref|ZP_03254203.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4045] gi|208821461|ref|ZP_03261781.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4042] gi|209395847|ref|YP_002272337.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4115] gi|217327396|ref|ZP_03443479.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. TW14588] gi|254794814|ref|YP_003079651.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. TW14359] gi|261226174|ref|ZP_05940455.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256572|ref|ZP_05949105.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. FRIK966] gi|12517375|gb|AAG57989.1|AE005515_11 type III secretion apparatus protein [Escherichia coli O157:H7 str. EDL933] gi|13363205|dbj|BAB37156.1| type III secretion protein EivG [Escherichia coli O157:H7 str. Sakai] gi|187768795|gb|EDU32639.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4196] gi|188017811|gb|EDU55933.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4113] gi|189003611|gb|EDU72597.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4076] gi|189358709|gb|EDU77128.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4401] gi|189363622|gb|EDU82041.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4486] gi|189369391|gb|EDU87807.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4501] gi|189373912|gb|EDU92328.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC869] gi|189377689|gb|EDU96105.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC508] gi|208727541|gb|EDZ77142.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4206] gi|208734151|gb|EDZ82838.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4045] gi|208741584|gb|EDZ89266.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4042] gi|209157247|gb|ACI34680.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. EC4115] gi|217319763|gb|EEC28188.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli O157:H7 str. TW14588] gi|254594214|gb|ACT73575.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. TW14359] gi|320640504|gb|EFX10043.1| type III secretion system outer membrane pore InvG [Escherichia coli O157:H7 str. G5101] gi|320645751|gb|EFX14736.1| type III secretion system outer membrane pore InvG [Escherichia coli O157:H- str. 493-89] gi|320651051|gb|EFX19491.1| type III secretion system outer membrane pore InvG [Escherichia coli O157:H- str. H 2687] Length = 567 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + V+D T + + + G Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204 Query: 96 QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147 A V L+ ++ KQ +++L E + R D +++VE + T Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T A + + L + +Q +K++ L+I + + L + I ++ + Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L+Q+G S + + F + G LD F + AL + Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P + A F + K V T + YG ++ P + + Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425 Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + N D+P T +P G ++++ G +D I Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+L IP +G LF N FL++P + + Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521 >gi|301027449|ref|ZP_07190786.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 69-1] gi|300394957|gb|EFJ78495.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 69-1] Length = 567 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + V+D T + + + G Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204 Query: 96 QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147 A V L+ ++ KQ +++L E + R D +++VE + T Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T A + + L + +Q +K++ L+I + + L + I ++ + Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L+Q+G S + + F + G LD F + AL + Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P + A F + K V T + YG ++ P + + Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425 Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + N D+P T +P G ++++ G +D I Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+L IP +G LF N FL++P + + Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521 >gi|238759396|ref|ZP_04620561.1| Possible type III secretion system protein [Yersinia aldovae ATCC 35236] gi|238702423|gb|EEP94975.1| Possible type III secretion system protein [Yersinia aldovae ATCC 35236] Length = 557 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 90/250 (36%), Gaps = 21/250 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV L + I +V + + +G + ++ G V+ F+ + Sbjct: 301 SRSQVELSLWIIDVTQSKVDDLGVRW----------EAGNIGVAGGSVT----FNRSTLS 346 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D +F + A+ + R ++ P + A F + + ++ Sbjct: 347 DSKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARVEGDRV--ATLEQVT 404 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGG 366 YG ++ P + + + + E G +P +T + Sbjct: 405 YGTMISVLPRLSGGSGVEMEVNIEDGGLNRDNTGKVADIGGLPEVNRTNINTVARIGRDK 464 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G +D +++ + IPLLS IP+LG LF+ N+++ P L+ D Sbjct: 465 SLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRLLDENEAWD 524 Query: 427 LSRPDDHYSV 436 + D+ + Sbjct: 525 GRQFSDNERL 534 >gi|218509314|ref|ZP_03507192.1| pilus assembly secretion protein [Rhizobium etli Brasil 5] Length = 177 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 53/128 (41%), Positives = 81/128 (63%), Gaps = 4/128 (3%) Query: 12 MSIFLFSSNPS-VAKLPPIKEANAA---VINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 ++I + P+ L + EA+A +I I+ +++ +GLNK +++ +P D Sbjct: 18 LAISVTGMAPASFGPLLAVDEAHADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 D+LVSDP+ AD V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE L Sbjct: 78 DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137 Query: 128 RRFIADSN 135 RRFI DSN Sbjct: 138 RRFIPDSN 145 >gi|83816469|ref|YP_445404.1| general (Type II) secretion pathway (GSP) D protein, putative [Salinibacter ruber DSM 13855] gi|83757863|gb|ABC45976.1| general (Type II) secretion pathway (GSP) D protein, putative [Salinibacter ruber DSM 13855] Length = 426 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 84/247 (34%), Gaps = 25/247 (10%) Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 F S + F L+ +E+ RT+A P +T SG+ G +T Sbjct: 176 FESVDNILQAPDQISLSQFRRFLNLVEQDNVGRTVANPQVTVQSGEQGEIQIGQDVPIQT 235 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSP-----------GRIGLRIQTEVSEPVIGVNAG 346 + G T G+++ TPT+LS I L + E S +G Sbjct: 236 -TDFAGNTVTEFFSTGIIIDVTPTLLSQPVADTSGAPVLDFIHLNVDVEDSN---SQPSG 291 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP----ILGALFRNSR 402 P +A T + L + GL+ + G+P+L +P L +F + Sbjct: 292 SGPIINRNQASTQILLLDNEATAIGGLISTQKTTRRSGVPILKDLPGWVFGLRYIFGSET 351 Query: 403 FNREETEIFIAATPFLVKPVAMR-----DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457 N + E+ I +V P+ R + D A R + A Sbjct: 352 TNVTKQELLIVLRAEIVDPLRARAKQEGNQELIDQRRRNAQKALRRLGERYAE-DAEFPA 410 Query: 458 SEVEGQN 464 E E Q+ Sbjct: 411 PETEAQS 417 >gi|327251623|gb|EGE63309.1| hypothetical protein ECSTEC7V_3473 [Escherichia coli STEC_7v] Length = 505 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 80/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + V+D T + + + G Sbjct: 95 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 142 Query: 96 QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147 A V L+ ++ KQ +++L E + R D +++VE + T Sbjct: 143 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 199 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T A + + L + +Q +K++ L+I + + L + I ++ + Sbjct: 200 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 256 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L+Q+G S + + F + G LD F + AL + Sbjct: 257 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 305 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P + A F + K V T + YG ++ P S + Sbjct: 306 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFASRNQ 363 Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + N D+P T +P G ++++ G +D I Sbjct: 364 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 423 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+L IP +G LF N FL++P + + Sbjct: 424 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 459 >gi|331654358|ref|ZP_08355358.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli M718] gi|331047740|gb|EGI19817.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli M718] Length = 567 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + V+D T + + + G Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204 Query: 96 QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147 A V L+ ++ KQ +++L E + R D +++VE + T Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T A + + L + +Q +K++ L+I + + L + I ++ + Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L+Q+G S + + F + G LD F + AL + Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P + A F + K V T + YG ++ P + + Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425 Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + N D+P T +P G ++++ G +D I Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+L IP +G LF N FL++P + + Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521 >gi|195952904|ref|YP_002121194.1| type II and III secretion system protein [Hydrogenobaculum sp. Y04AAS1] gi|195932516|gb|ACG57216.1| type II and III secretion system protein [Hydrogenobaculum sp. Y04AAS1] Length = 653 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 24/248 (9%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--------GGKFVSEGGDFSV 247 + + V E+ +D KQ+G + G + ++F F Sbjct: 406 IQIDVKAVEISKDYQKQLGLGIGGAYAGRGITILNTSNFNPISPLANAFSFTPGSSPIVT 465 Query: 248 KGVLDRFS--------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 ++ + + ALE +++ + TL A++ Q S T G ++ Sbjct: 466 ATPINAPNGLMSGIYSEGKFHVLGFEIQALESINKAKSVFKSTLLAMNDQPTSLTQGIEY 525 Query: 294 LYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 + T+S+ A +VT + + TP VL G+I L I + + + + A P+ Sbjct: 526 PFTTISTPGQAVPTVTLQNVLNSIKVTPQVLPNGKILLNINIQ-NMSLGPLAANGQPTIN 584 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 ++ L G T+ + G+ + +GIP L K+PI+G + ++ T +FI Sbjct: 585 QNSNSLSIVLSDGATLAIGGVGLKNESNGLQGIPGLDKVPIIGNVGMTKNESKNNTNLFI 644 Query: 413 AATPFLVK 420 T V+ Sbjct: 645 FITAKRVE 652 >gi|320174026|gb|EFW49196.1| General secretion pathway protein D [Shigella dysenteriae CDC 74-1112] Length = 164 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 2/112 (1%) Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L TP + + + I+ EVS+ + + + RK TTV G IVL GL+ Sbjct: 1 MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 D + +PLL IP++G LF+++ +E+ + + P +++ D Sbjct: 59 DDQAGESVAKVPLLGDIPLIGKLFKSTADKKEKRNLMVFIRPTILRDGMAAD 110 >gi|91070466|gb|ABE11376.1| putative general (type II) secretion pathway protein D precursor [uncultured Prochlorococcus marinus clone HOT0M-10G7] Length = 640 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 104/284 (36%), Gaps = 47/284 (16%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVR--RDILKQIGFQHSITGS---SSGPSKSFAADFG 235 ++ + L++ + QV L V I +V + +K+ F+ + S+ ++ G Sbjct: 360 AETFIKSLDVRHK-QVALTVKIIDVSLTKSDIKENVFELLTGDTRIISNSGLGILTSNLG 418 Query: 236 GKFVSEGGDFS--VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA-------- 285 + S + G + + F L A + LA PTL +A Sbjct: 419 AINPGDSARVSNALTGGVGQGGFMNWLEAKIDNNNAKILASPTLILGEDGNALSSGAAAV 478 Query: 286 -----------------SFTSGGQHLYKTVSSSTGATSVTTHD-------YGVVLHFTPT 321 G + SS + T +G L Sbjct: 479 DDTLSQATIGRPYKNEGFIKVGETVITSFEQSSNEGVTTCTAQEGTAGITFGAKLE---K 535 Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADT-TVELPSGGTIVLAGLLKDD 377 + G + + +S V + VRK DT ++ + +G T++L G+L+D Sbjct: 536 IDDNGYVTFALSPAISSVTSTVEIAGCGIQNTLSVRKLDTGSIRVQNGETLILTGVLQDS 595 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 +P+L IPI G++FR+S +++ E+ I TP ++K Sbjct: 596 DTVTTSKVPILGDIPIFGSIFRSSATQKKKNELIILVTPKILKD 639 >gi|53716325|ref|YP_106133.1| type III secretion system protein BsaO [Burkholderia mallei ATCC 23344] gi|52422295|gb|AAU45865.1| type III secretion system protein BsaO [Burkholderia mallei ATCC 23344] Length = 606 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 304 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 362 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 363 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 411 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 412 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 469 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 470 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 529 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 530 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 589 >gi|320667142|gb|EFX34105.1| type III secretion system outer membrane pore InvG [Escherichia coli O157:H7 str. LSU-61] Length = 505 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + V+D T + + + G Sbjct: 95 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 142 Query: 96 QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147 A V L+ ++ KQ +++L E + R D +++VE + T Sbjct: 143 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 199 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T A + + L + +Q +K++ L+I + + L + I ++ + Sbjct: 200 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 256 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L+Q+G S + + F + G LD F + AL + Sbjct: 257 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 305 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P + A F + K V T + YG ++ P + + Sbjct: 306 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 363 Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + N D+P T +P G ++++ G +D I Sbjct: 364 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 423 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+L IP +G LF N FL++P + + Sbjct: 424 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 459 >gi|159903356|ref|YP_001550700.1| Type II secretory pathway, component PulD [Prochlorococcus marinus str. MIT 9211] gi|159888532|gb|ABX08746.1| Type II secretory pathway, component PulD [Prochlorococcus marinus str. MIT 9211] Length = 575 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 110/291 (37%), Gaps = 45/291 (15%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG--FQHSITGSSSGPSKSFA 231 + Y S ++K + L++ + QV L V + +V + + F++ I + S+S Sbjct: 271 DPYLVSIAEKYLKQLDLR-QRQVALSVKVIDVLLNNTTDMKNAFEYGIGDNYIINSESKG 329 Query: 232 ADFG-GKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFT 288 + G DFSV S F + + LA PTL Q Sbjct: 330 LMYMFGNKSFSPTDFSVTDSFSLASRKFMGWFRSKVLTNNAKILANPTLILGESQE-EIL 388 Query: 289 SGGQH-------------------LYKTVSSSTGATSVTTHDYGVVLHFTPT-------- 321 G + K +S ++++ + G L P Sbjct: 389 GGSEVSGSLGLGDSTIGRPWANEGFVKVGTSVVTNYTISSAEDGSTL-CEPQTDIAGITF 447 Query: 322 ------VLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADT-TVELPSGGTIVLA 371 + G + + +S + GD + + +R+ DT + + G T+VL Sbjct: 448 GAKVHKIDDNGYVTFSLSPNISAVSETQSIGDCGNISTLSIRRLDTGNIRVRDGDTLVLT 507 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 G++K+D + P+L IP+ G LFR + R+++E+ I TP ++K Sbjct: 508 GVIKEDDTKAITKTPVLGDIPLFGRLFRTNSTVRKKSELIIMVTPKVIKDS 558 >gi|213024547|ref|ZP_03338994.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 284 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 100/260 (38%), Gaps = 25/260 (9%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ L++A + V L + I ++ + L+++G S + G + Sbjct: 15 LVKALDVA-KRHVELSLWIVDLNKSDLERLGTSWS------------GSITIGDKLGVSL 61 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 + S LD F ++ALE ++ P L A F + K + Sbjct: 62 NQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNV 121 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADT 358 A T YG ++ P + G+I + + E + +P T Sbjct: 122 ALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLIST 179 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +P G ++++ G +D + IP+L K+P++G+LFR S N+ F+ Sbjct: 180 IARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN-----VVRVFM 234 Query: 419 VKPVAMRDLSRPDDHYSVED 438 ++P + D PD SV + Sbjct: 235 IEPKEIVDPLTPDASESVNN 254 >gi|331664433|ref|ZP_08365339.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli TA143] gi|331058364|gb|EGI30345.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli TA143] Length = 567 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 78/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + V+D T + + + G Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204 Query: 96 QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147 A V L+ ++ KQ +++L E + R D +++VE + + Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKI---IAT 261 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T A + + L + +Q +K++ L+I + + L + I ++ + Sbjct: 262 AGAPETDNIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L+Q+G S + + F + G LD F + AL + Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P + A F + K V T + YG ++ P + + Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425 Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + N D+P T +P G ++++ G +D I Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+L IP +G LF N FL++P + + Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521 >gi|186976189|gb|ACD01071.1| EivG [Escherichia coli O157:H7 str. EC10] Length = 567 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 46/401 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + V+D T + + + G Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204 Query: 96 QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147 A V L+ ++ KQ +++L E + R D +++VE + T Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T A + + L + +Q +K++ L+I + + L + I ++ + Sbjct: 262 AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L+Q+G S + + F + G LD F + AL + Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P + A F + K V T + YG ++ P + + Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425 Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + N D+P T +P G ++++ G +D I Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTFISTIARVPQGKSLLIGGYTRDTNTYESRKI 485 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+L IP +G LF N FL++P + + Sbjct: 486 PILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521 >gi|42527064|ref|NP_972162.1| hypothetical protein TDE1556 [Treponema denticola ATCC 35405] gi|41817488|gb|AAS12073.1| conserved domain protein [Treponema denticola ATCC 35405] Length = 400 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 9/231 (3%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+ ++ + + + + + P F+ F +F + + Sbjct: 148 QIRYQLLVVQYEKSENINWAKSLEVKKAKGKPMSEFSGIMSNIF---NINFDIVSKFG-Y 203 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTH 310 F L+ R LA+ TL I+G+ F + Y + + S+ Sbjct: 204 QFIAKLNFELAENKARVLADTTLNGITGEEVRFQNTNTFRYIDKTLDSNGKPLYGSMREI 263 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G++L+ V G I + + +VS+ GV +G +P + T V PSG I+ Sbjct: 264 TSGLLLNIKGNVSGDGMITMEVNAQVSKQGSGGVTSGVLPPTSEKIVKTKVRTPSGKPII 323 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + GLL+ + ++ IP L IPI G F++ + TE+ I P++ + Sbjct: 324 IGGLLQVEQNSSEKKIPGLGDIPIAGLAFKDINGSETVTEMVIYIVPYIHR 374 >gi|254448224|ref|ZP_05061686.1| Bacterial type II and III secretion system protein [gamma proteobacterium HTCC5015] gi|198262091|gb|EDY86374.1| Bacterial type II and III secretion system protein [gamma proteobacterium HTCC5015] Length = 629 Score = 120 bits (300), Expect = 7e-25, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 17/213 (7%) Query: 246 SVKGVLDRFSFETVLHALE-RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ + + L+ L + LA PTL A +GQ++ F SG + VS G Sbjct: 368 TITNFISVPAVNYNLNILNAKDGVNEILARPTLVARAGQTSEFFSGVEVSAAAVSGGAGD 427 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE--- 361 + + GV L TP G I L+++ E + + ++ + +R+ TTV Sbjct: 428 SISVEKEIGVKLAVTPEFGPDGSIILQVEAERTF-LTTPSSSVLFEFRLDTTKTTVNANV 486 Query: 362 -LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G T++L GL + + + +G+P+L IP++ F + + I TP + Sbjct: 487 AMNYGQTLILGGLNERETENDSDGVPILRDIPLINLFFSRKTQRDFKKSVMILLTP---R 543 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453 P + Y+ ++++A R I G Sbjct: 544 PAS--------YMYTDPEESRASIEARSEAIRG 568 >gi|300936194|ref|ZP_07151130.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 21-1] gi|300458651|gb|EFK22144.1| type III secretion outer membrane pore, YscC/HrcC family [Escherichia coli MS 21-1] Length = 567 Score = 120 bits (300), Expect = 7e-25, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 145/401 (36%), Gaps = 46/401 (11%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + V+D T + + + G Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHL----VNTFVNDRT---YELRGEKIVI-----PG 204 Query: 96 QANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDTVVL 147 A V L+ ++ KQ +++L E + R D +++VE + T Sbjct: 205 MAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST--- 261 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G+ T A + + L + +Q +K++ L+I + + L + I ++ + Sbjct: 262 AGVPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIIDIDK 318 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L+Q+G S + + F + G LD F + AL + Sbjct: 319 TDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALAQKR 367 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 +A P + A F + K V T + YG ++ P + + Sbjct: 368 RAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAARNQ 425 Query: 328 IGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 I L + E + N D+P T +P G ++++ G +D I Sbjct: 426 IELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKI 485 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 P+L IP +G LF N FL++P + + Sbjct: 486 PILGSIPFIGILFGYEGTNANN-----IVRVFLIEPREIDE 521 >gi|85059260|ref|YP_454962.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] gi|84779780|dbj|BAE74557.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 494 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 12/230 (5%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + + V I +V + ++G S S G SF +D G FS + + Sbjct: 265 PQMIEIAVMIIDVDVGDINKLGIDWSGAMSLGGSGFSFNSD-----GDIRGGFSSV-ISN 318 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F L+ LE+ L++P++ ++ A + T + + Sbjct: 319 TNDFMVRLNVLEQRAHAYILSQPSVVTLNNIQAVLD--KNVTFYTKLQGDKFAKLESVTT 376 Query: 313 GVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTI 368 G +L TP ++ I L + + + ++A D +P + + + L G ++ Sbjct: 377 GSLLRVTPRLMEDQGKQNIMLSLNIQDGQQTSPLSATDPLPQVQNSEIASQATLRPGQSL 436 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +L G +D +Q ++ IPLL IP+LG LFR+S + Sbjct: 437 LLGGFQQDKQKQGQKKIPLLGDIPLLGHLFRSSIDETHSVMRLFLIKATV 486 >gi|207724596|ref|YP_002254993.1| hrcc (hrpa) protein (partial sequence c terminus) [Ralstonia solanacearum MolK2] gi|206589818|emb|CAQ36779.1| probable hrcc (hrpa) protein (partial sequence c terminus) [Ralstonia solanacearum MolK2] Length = 303 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 25/246 (10%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240 + +I ++ L+Q+G + S +G + + G S Sbjct: 61 ISASIIDITETALEQLGVDWRLHNSRFDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 120 Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 GG S + AL++ R A P + + A + Sbjct: 121 TPAGGVLSAVIGGGSRYLMARISALQQTNQARITASPKVATLDNTEAVMDNRQNFYVPVA 180 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355 + + GV L P V+ G RI + + E + G++P + Sbjct: 181 GYQ--SADLYAISAGVSLRVLPMVVMDGGTVRIRMNVHIE-DGQITSQQVGNLPVTSQSE 237 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 DT + G ++++AG D + + IP LSKIP++GALFR + + + T Sbjct: 238 IDTQALINEGESLLIAGYSVDQQAKTVDAIPGLSKIPLVGALFRTDQTTGQRFQRMFLVT 297 Query: 416 PFLVKP 421 P ++ P Sbjct: 298 PRVITP 303 >gi|22127359|ref|NP_670782.1| hypothetical protein y3485 [Yersinia pestis KIM 10] gi|108810715|ref|YP_646482.1| outer membrane secretin family protein [Yersinia pestis Nepal516] gi|229840586|ref|ZP_04460745.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842864|ref|ZP_04463016.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229900910|ref|ZP_04516034.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|270487710|ref|ZP_06204784.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294502758|ref|YP_003566820.1| hypothetical protein YPZ3_0648 [Yersinia pestis Z176003] gi|21960443|gb|AAM87033.1|AE013951_8 hypothetical [Yersinia pestis KIM 10] gi|108774363|gb|ABG16882.1| outer membrane secretin family protein [Yersinia pestis Nepal516] gi|229682249|gb|EEO78341.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|229690131|gb|EEO82188.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229696952|gb|EEO86999.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|262360790|gb|ACY57511.1| hypothetical protein YPD4_0602 [Yersinia pestis D106004] gi|262364735|gb|ACY61292.1| hypothetical protein YPD8_0602 [Yersinia pestis D182038] gi|270336214|gb|EFA46991.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294353217|gb|ADE63558.1| hypothetical protein YPZ3_0648 [Yersinia pestis Z176003] gi|320016745|gb|ADW00317.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 149 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 11/154 (7%) Query: 323 LSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 RI + + EVS N PS R+RKA+TTVEL G + +L GL+ + Sbjct: 2 NEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTER 61 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 + + IP + IP+LGALFRN++ R ++E+ + AT LVKPV+ R + PD + Sbjct: 62 ESLKKIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTST 119 Query: 440 AKAFF-FNRVNKIYGPKEASEVEGQNYKGAIGFI 472 + FF + K+A E + GFI Sbjct: 120 VERFFNLTNIKDAKRRKQAKE-----FLQKGGFI 148 >gi|320184380|gb|EFW59192.1| General secretion pathway protein D [Shigella flexneri CDC 796-83] Length = 164 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 2/112 (1%) Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L TP + + + I+ EVS+ + + + RK TTV G IVL GL+ Sbjct: 1 MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 D + +PLL IP++G LF+++ +E+ + + P ++ D Sbjct: 59 DDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILHDGMAAD 110 >gi|108809091|ref|YP_653007.1| putative outer membrane secretin family protein [Yersinia pestis Antiqua] gi|108781004|gb|ABG15062.1| putative outer membrane secretin family protein [Yersinia pestis Antiqua] Length = 149 Score = 119 bits (299), Expect = 9e-25, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 11/154 (7%) Query: 323 LSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 RI + + EVS N PS R+RKA+TTVEL G + +L GL+ Q Sbjct: 2 NEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTEQ 61 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 + + IP + IP+LGALFRN++ R ++E+ + AT LVKPV+ R + PD + Sbjct: 62 ESLKKIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTST 119 Query: 440 AKAFF-FNRVNKIYGPKEASEVEGQNYKGAIGFI 472 + FF + K+A E + GFI Sbjct: 120 VERFFNLTNIKDAKRRKQAKE-----FLQKGGFI 148 >gi|172036496|ref|YP_001802997.1| general secretion pathway protein D [Cyanothece sp. ATCC 51142] gi|171697950|gb|ACB50931.1| general secretion pathway protein D [Cyanothece sp. ATCC 51142] Length = 778 Score = 119 bits (299), Expect = 9e-25, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 99/262 (37%), Gaps = 33/262 (12%) Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------GKFV 239 NL+ + + Q +A V D IT + G +F F V Sbjct: 495 NLIRVPSDAQ--FFGRVAGVSMDPTLA-----GITDITPGEPDTFERTFDPETGIVTTTV 547 Query: 240 SEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 + G + G L F F + ++ + L +PTL GQ A+ + + Sbjct: 548 TPGSIATATGALPSFFQFPRRFLAQIETNIQSGNAKILTDPTLVVQEGQEATVKLTQKVI 607 Query: 295 YKTVSSSTGATSVTT-----HDYGVVLHF-TPTVLSPGRIGLRIQT------EVSEPVIG 342 + + V T D G+ L + G I L + +V + G Sbjct: 608 ENITTQVDPLSGVRTTTPVLQDAGLTLAINVDKIDDNGYINLTVSPTIAAVGDVQQFDSG 667 Query: 343 VNAGDMPSY--RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 + G + R+ + + L G T++L+G++ + Q +PLL IP+LGALFR Sbjct: 668 SDGGTNNLFLLNRRELSSGLIRLRDGQTLILSGIISESDQSTTSKVPLLGDIPLLGALFR 727 Query: 400 NSRFNREETEIFIAATPFLVKP 421 + + TE+ + TP ++ Sbjct: 728 SQTDTSQRTEVIVLLTPQILHD 749 >gi|85060069|ref|YP_455771.1| type III secretion apparatus InvG [Sodalis glossinidius str. 'morsitans'] gi|45504769|gb|AAS66859.1| InvG [Sodalis glossinidius] gi|84780589|dbj|BAE75366.1| type III secretion apparatus InvG [Sodalis glossinidius str. 'morsitans'] Length = 546 Score = 119 bits (299), Expect = 9e-25, Method: Composition-based stats. Identities = 74/452 (16%), Positives = 157/452 (34%), Gaps = 87/452 (19%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL-- 70 ++ + A +++A G+ + + + +++ + +L Sbjct: 113 AVVALRTILPAALRHFLQQAQLHDPRYPLRGDPGGRLLYLS-GPPMYVELVENAARLLDK 171 Query: 71 ----VSDPTKADVVVHS-----PRTMYLFGKN---VGQANVI--LIGHDGKQMLNLDILI 116 + D +A+V+ S R L G+ G A VI L+ +G+ + + Sbjct: 172 EPDGIHDREQAEVIPLSYTFVGDRYYALRGEKVTIPGIATVIERLMRREGRSAVA---DV 228 Query: 117 ERDIAHLEMTLR----------RFIADSNIRV--EMVSDTVVLHGMVRTIQDSQRAVELS 164 + E L + ++V ++++++ G R +Q Sbjct: 229 PAPLTPAEALLPVAEVRAEQDVEPLPLWPVQVIANPSNNSLLVKGTGRQVQ--------- 279 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + ++ L+I + V L + I ++ + L Q G Sbjct: 280 ---------------FVRNLVRSLDIP-KRHVELSLWIIDLEKSDLDQFGINWQ------ 317 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + GG +++G LD F + AL R ++ P + Sbjct: 318 --GGARIGQRGGVTLNQGS----YSALDGTRFVASILALARKHRANIVSRPIILTQENVP 371 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHD--YGVVLHFTPTVLSPGRIGLRIQTE----VSE 338 A F + + + G SV + YG ++ P +I + + E VS Sbjct: 372 AIFDNNRTFYTRLL----GERSVELREVTYGTMISVLPRFSGDDQIEMVLTIEDGGEVSR 427 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + D+P T +P G ++++ G +D+++ + +P L IP++G LF Sbjct: 428 RQSNPGSDDLPEVGRTHISTVARVPRGKSLLIGGYTRDELRGNRARLPGLGSIPLIGGLF 487 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430 R+ + FL++P R++S P Sbjct: 488 RHRIDKQAN-----MVRVFLIQP---REISEP 511 >gi|284052867|ref|ZP_06383077.1| type II and III secretion system protein [Arthrospira platensis str. Paraca] Length = 785 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 12/180 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310 F + L A + + L +PTL G++AS + L ++ T S T Sbjct: 585 FLSTLQAQIVSGRAKILTDPTLVVQEGETASVQLVQEVLQSRTTTFTDTPSGTRETIQPQ 644 Query: 311 --DYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADT-TVELP 363 G+ L + G + + I EVS P V G + R + + L Sbjct: 645 LVPVGLTLGVNVQRIDDNGFVTMTINPEVSSPGSQVGTGGDDFVLQIFRRNLQSGRIRLR 704 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G T++++G+++D + IPLL +PILG+LFR S + E E+ + TP ++ Sbjct: 705 DGQTLIVSGIIQDQERTDVSKIPLLGDLPILGSLFRRSSTSSERAEVIVLVTPNILDDSD 764 >gi|123443735|ref|YP_001007706.1| type III secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090696|emb|CAL13572.1| possible type III secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 563 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 21/240 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV L + I +V + + +G + G G V+ F+ + Sbjct: 307 SRSQVELSLWIIDVTQSKVDDLGVRWEAGG----------IGVAGGSVT----FNRSTLS 352 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D +F + A+ + R ++ P + A F + + S+ Sbjct: 353 DSKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARVEGERV--ASLQQVT 410 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGG 366 YG ++ P + + + + E + +P +T + Sbjct: 411 YGTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINTVARIGRDK 470 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G +D +++ + IPLLS IP+LG LF+ N+++ P L+ D Sbjct: 471 SLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRLLDENEAWD 530 >gi|16330870|ref|NP_441598.1| general secretion pathway protein D [Synechocystis sp. PCC 6803] gi|1653364|dbj|BAA18278.1| general secretion pathway protein D [Synechocystis sp. PCC 6803] Length = 785 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 16/184 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YKTVSSSTGATSVTT---- 309 F+ + A R+ + L +PTL G++A + T + G T+V T Sbjct: 573 FQAQIDAQIRSGNAKILTDPTLIVQEGEAAQVKLTESVIASVDTQVDTQGDTAVRTITPV 632 Query: 310 -HDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGV-------NAGDMPSYRVRKADT-T 359 D G+ L+ + G I LR+ V+ P ++ R+ + Sbjct: 633 LEDVGLTLNVIVDRIDDNGFITLRVNPIVASPAGTQVFDSGAGAINEITLINKRELTSGV 692 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V L T +L+G++ + + +P+L +P++GALFR S + +E+ I TP ++ Sbjct: 693 VRLRDDQTFILSGIISELQRSTTSKVPILGDLPVIGALFRQSTDTTDRSEVIILMTPKII 752 Query: 420 KPVA 423 Sbjct: 753 HDST 756 >gi|330937041|gb|EGH41129.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. pisi str. 1704B] Length = 364 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 88/246 (35%), Gaps = 13/246 (5%) Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 SS + + + GG + + G S + + F LHALE + + P++ + Sbjct: 3 SSRWNFNAGSVNGGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLEN 62 Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEP 339 Q A ++S ++ G L TP L ++ L + E + Sbjct: 63 QPAVIDFSRTEY--LTATSERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQI 120 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LF 398 I PS R T + G++V+ G + +PLL IP +G LF Sbjct: 121 DISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGKLLF 180 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 ++ + E TP L+ D P + + +++ +I ++ Sbjct: 181 QSRSRELSQRERLFILTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERRDGG 233 Query: 459 EVEGQN 464 E+ + Sbjct: 234 ELPTRG 239 >gi|167923347|ref|ZP_02510438.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei BCC215] Length = 353 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 51 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 109 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 110 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 158 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 159 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 216 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 217 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 276 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 277 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 336 >gi|188534044|ref|YP_001907841.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] gi|188029086|emb|CAO96954.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] Length = 592 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 67/415 (16%), Positives = 148/415 (35%), Gaps = 36/415 (8%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71 +S + S P V A + S+ G+ I LN + +D V Sbjct: 163 LSASFYISGPPVYVELVTAAAKYIDASYSNPRAGEMTVRVIKLNNTFVNDRNYTQRDTSV 222 Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 S P A V+ KN+ ++ G+ + + D + + I Sbjct: 223 SIPGIASVL-----------KNLMSNTTKVLNVKGEAIAIDEHSDGEDRSKTHYSQFDSI 271 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQ-DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + D+V ++ R V ++T ++ + + ++ +++ Sbjct: 272 P--KLSDFSSPDSVFSSERPSAADIEAVRIVAYTDTNSLLVMGSERQVNFVEDLVKAIDV 329 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 + + Q+ L + I ++ + + ++G + S G + +F + S Sbjct: 330 S-KRQIQLSLWIIDISKKEINELGVKWSGAGKVNNTGVTF-------------NTSSLTP 375 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + F + AL ++ + + ++ P + A F + K + T +S+ Sbjct: 376 ENSIHFLADVSALVKSGSAQVISRPEILTQENVPALFDNNSSFYAKLIGERT--SSLEKI 433 Query: 311 DYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPS 364 YG ++ P + + + I + + + MP+ + T +P Sbjct: 434 TYGTMISVLPRLATGQQEIEMILNIHDGTVPLNAQGEPDKFDSMPTTSNTQISTEARVPL 493 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G ++++ G +D +Q G+PLL IP LG +F S ++ + P L+ Sbjct: 494 GHSLLVGGYSRDQDEQHNIGVPLLRDIPYLGRIFNYSYKSQTKMVRIFLIHPELL 548 >gi|300867368|ref|ZP_07112024.1| type II and III secretion system protein [Oscillatoria sp. PCC 6506] gi|300334619|emb|CBN57192.1| type II and III secretion system protein [Oscillatoria sp. PCC 6506] Length = 810 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 16/230 (6%) Query: 228 KSFAADFGGKFVSEG-GDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSA 285 ++ D G+ S G FS+ + + F + L A + + L +PTL G++A Sbjct: 575 RTLNGDDAGQLDSLGEATFSLFPLFQYPTRFLSQLQAQIQTNNAKILTDPTLIVQEGETA 634 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTH-------DYGVVLHFTPT-VLSPGRIGLRIQTEVS 337 Q + + +T T +T + G+ L+ T + G I +RI V Sbjct: 635 GVNLTEQVITNITTQTTAGTGLTQQTVTAEKGNAGLTLNVEVTRIDDNGFISMRINPTVR 694 Query: 338 EPVIGVNAGD--MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 G+ + + R + + L G T++++G++ D + IP+L +PI+ Sbjct: 695 AIARTSPLGNNLISLLQERSLSSGLIRLRDGQTLIVSGIINDTERVTASKIPILGDLPII 754 Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444 GALFR++ + + E+ + TP ++ D S Y+ DA+ Sbjct: 755 GALFRSTSKSNQRAEVIVLVTPQILDDS---DRSSFGYQYNPSPDARQML 801 >gi|167915501|ref|ZP_02502592.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei 112] Length = 348 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 46 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 104 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 105 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 153 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 154 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 211 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 212 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 271 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 272 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 331 >gi|167573168|ref|ZP_02366042.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia oklahomensis C6786] Length = 577 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 88/266 (33%), Gaps = 43/266 (16%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------------------ 225 + ++ I E+ D+L+QIG S Sbjct: 313 IEIQAHIMEIDDDLLRQIGVDWRAHNSHGDIQTGMGAVTQNSYGSTSTGIGATAQNSYAN 372 Query: 226 -------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + + G + ++AL+ + ++ A P + Sbjct: 373 GQINPFFGTTTLPGNAIANAPPAGAAITAVVGDAAHYLMARVNALQSTSKVKIDASPLVA 432 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + A + + + S + + + GV L P ++ G RI L + Sbjct: 433 TLDNSEAVMDNMTRFFVRV--SGYTSADLYSIATGVSLRVLPLIVQDGSETRIKLNVHVT 490 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G +P + +T + G ++++AG D G+P LSKIP++G Sbjct: 491 -DGQLTGDLVDSIPVVTSSEINTQAFVGQGESLLIAGYSTDKRSNGVTGVPWLSKIPLIG 549 Query: 396 ALFRNSRFNREETEIFIAATPFLVKP 421 ALFR + E +P ++ P Sbjct: 550 ALFRYNSDEHSHMERVFLLSPRIIDP 575 >gi|171915747|ref|ZP_02931217.1| putative type III secretion protein YscC [Verrucomicrobium spinosum DSM 4136] Length = 650 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 93/265 (35%), Gaps = 31/265 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------------SITG 221 +++ +L++ + + I +V K G + S Sbjct: 306 DELIQMLDVPTNA-IEITAAIVDVDTTNGKDFGMEFLGNYTAKDGNKYRFGFEADRSQFD 364 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTA 279 P ++ + G + GG +V ++ F T L ALE ++ P++ Sbjct: 365 GGEAPPETTPSFVDGTNLVRGGGLNVAALIGGEGFDLLTRLRALETKGGADIVSSPSVLT 424 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--GVVLHFTPT-VLSPGRIGLRIQTEV 336 + A + + G V D GV TP V+ G+ R+ ++ Sbjct: 425 MENVEAVVRTEETFYVRVA----GDQEVDLFDVTAGVQFRVTPNLVVENGKRSFRLHLDI 480 Query: 337 SE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 ++ + D+P R T +P T+++ G + + IP+L IP++G Sbjct: 481 TDGNFEDTSVDDIPGTRESAITTQAIVPESKTLLVGGYFIERKTKNTRQIPILGDIPVVG 540 Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420 F+ E + F TP +V Sbjct: 541 YAFKRKEVLNERKQRFFFITPKVVD 565 >gi|256259410|gb|ACU65047.1| HrcC [Pseudomonas syringae pv. syringae] Length = 701 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 98/274 (35%), Gaps = 24/274 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + I +V R + ++ ++ + GG ++E G S V D+ Sbjct: 317 IEIDAIIVDVDRSQMDELSSNWGLSAGNFS---------GGANIAENGRSSTMFVQDQDK 367 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L ALE + + P++ + Q A + + V + G Sbjct: 368 FFAGLRALEGNGSATVIGNPSVLTLENQPAVIDFSQTEILEAVGERV--ANFQPLTAGTS 425 Query: 316 LHFTPT-VLSPG----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L P + + G I L + E + + PS R T + ++V+ Sbjct: 426 LQVIPRSITASGAKNQMIQLVVDIEDGQIEESNIRAEQPSVRRGNVSTQAVIAEKASLVV 485 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 G + + + +P LS IPILG LF + E TP LV + R Sbjct: 486 GGFHVYENNERTKKVPYLSAIPILGKLLFTARERGQSNRERLFILTPRLVGDQV--NPMR 543 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 D Y + + +R+NKI +E +E + Sbjct: 544 YID-YGNPNHVQ----DRLNKIKERREGAEQPNR 572 >gi|167724236|ref|ZP_02407472.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia pseudomallei DM98] Length = 351 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 49 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 107 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 108 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 156 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 157 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 214 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 215 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 274 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 275 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 334 >gi|167567958|ref|ZP_02360874.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia oklahomensis EO147] Length = 577 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 88/266 (33%), Gaps = 43/266 (16%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------------------ 225 + ++ I E+ D+L+QIG S Sbjct: 313 IEIQAHIMEIDDDLLRQIGVDWRAHNSHGDIQTGMGAVTQNSYGSTSTGIGATAQNSYAN 372 Query: 226 -------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 + + + G + ++AL+ + ++ A P + Sbjct: 373 GQINPFFGTTTLPGNAIANAPPAGAAITAVVGDAARYLMARVNALQSTSKVKIDASPLVA 432 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335 + A + + + S + + + GV L P ++ G RI L + Sbjct: 433 TLDNSEAVMDNMTRFFVRV--SGYTSADLYSIATGVSLRVLPLIVQDGSETRIKLNVHVT 490 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + G +P + +T + G ++++AG D G+P LSKIP++G Sbjct: 491 -DGQLTGDLVDSIPVVTSSEINTQAFVGQGESLLIAGYSTDKRSNGVTGVPWLSKIPLIG 549 Query: 396 ALFRNSRFNREETEIFIAATPFLVKP 421 ALFR + E +P ++ P Sbjct: 550 ALFRYNSDEHSHMERVFLLSPRIIDP 575 >gi|76817430|ref|YP_335745.1| YscC/HrcC family type III secretion outer membrane protein [Burkholderia pseudomallei 1710b] gi|76581903|gb|ABA51377.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia pseudomallei 1710b] Length = 339 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 37 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 95 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 96 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 144 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 145 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 202 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 203 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 262 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 263 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 322 >gi|167908440|ref|ZP_02495645.1| Type III secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 360 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 58 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 116 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 117 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 165 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 166 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 223 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 224 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 283 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 284 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 343 >gi|298489848|ref|YP_003720025.1| type II and III secretion system protein ['Nostoc azollae' 0708] gi|298231766|gb|ADI62902.1| type II and III secretion system protein ['Nostoc azollae' 0708] Length = 818 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 86/226 (38%), Gaps = 13/226 (5%) Query: 235 GGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G V++G + L F L A + + L +PTL GQ A Sbjct: 593 GTTSVTQGTAGTATASLPSLYKFPKRFLASLQAQVQTGNAKILTDPTLIVQEGQDAVVKL 652 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNA--G 346 +Y + + + G+ L + G + L + VS + G Sbjct: 653 -TSEVYGGIRITDTLREPIIKEAGLTLAVKVERIDDNGFVSLSVAPTVSAFANSASTPDG 711 Query: 347 DMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 ++ R + + L G T++L+G+++D + +P+L IP+LG+LFR + Sbjct: 712 NIALLAARSLQSGILRLRDGQTLILSGIIQDQDRTTISKLPILGDIPLLGSLFRKTNRQN 771 Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 E E+ + TP + + + S +Y+ + R K+ Sbjct: 772 ERREVIVLLTPQV---MDDSERSAYGYNYNPSSQVRQILERRGLKV 814 >gi|75909894|ref|YP_324190.1| type II and III secretion system protein [Anabaena variabilis ATCC 29413] gi|75703619|gb|ABA23295.1| type II and III secretion system protein [Anabaena variabilis ATCC 29413] Length = 811 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 92/244 (37%), Gaps = 23/244 (9%) Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278 IT ++ G + G S + L A + + L +PTL Sbjct: 569 ITRNADGTTTITQGTLGTATTSLPTIYQFP-----KRLLASLQAQVQNGNAKVLTDPTLI 623 Query: 279 AISGQSASFT------SGGQHLYKTVSSSTGATSVTTH-----DYGVVLHFT-PTVLSPG 326 GQ A G + ++ S+ + S +T + G+ L+ + G Sbjct: 624 VQEGQQAVVKLTTEVFGGFEESGQSSSTGSNTQSSSTKKPIIKEAGLSLNVKVERIDDNG 683 Query: 327 RIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKE 383 + L + VS P + G + R + + L G T++L+G++++ + Sbjct: 684 FVSLSVAPTVSAPGGSTQTSDGQITLLSARSLQSGLIRLRDGQTLILSGIIQESDRSTVS 743 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443 +P+L +P++G+LFR + E E+ + TP + + S +YS + + Sbjct: 744 KLPILGDLPLIGSLFRKTNRTNERREVIVLLTPQV---MDDSQNSSYGYNYSPSPEVRQL 800 Query: 444 FFNR 447 R Sbjct: 801 LERR 804 >gi|320656547|gb|EFX24443.1| type III secretion system outer membrane pore InvG [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 567 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 77/404 (19%), Positives = 142/404 (35%), Gaps = 52/404 (12%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V+N + + I IG NKV I+ + + RT L G+ + Sbjct: 157 VVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEKIV 201 Query: 96 QANV-----ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA------DSNIRVEMVSDT 144 ++ L+ ++ KQ +++L E + R D +++VE + T Sbjct: 202 IPSMAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIIST 261 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 G T A + + L + +Q +K++ L+I + + L + I + Sbjct: 262 ---AGAPETDDIQIIAYPDTNSLLVKGTVSQVDF--IEKLVATLDIP-KRHIELSLWIID 315 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 + + L+Q+G S + + F + G LD F + AL Sbjct: 316 IDKTDLEQLGADWS-------GTIKIGSSLSASFNNSGSI----STLDGTQFIATIQALA 364 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 + +A P + A F + K V T + YG ++ P + Sbjct: 365 QKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERT--AELDEVTYGTMISVLPRFAA 422 Query: 325 PGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 +I L + E + N D+P T +P G ++++ G +D Sbjct: 423 RNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYES 482 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 IP+L IP +G LF N FL++P + + Sbjct: 483 RKIPILGSIPFIGKLFGYEGTNANN-----IVRVFLIEPREIDE 521 >gi|167840181|ref|ZP_02466865.1| type III secretion outer membrane pore, YscC/HrcC family protein [Burkholderia thailandensis MSMB43] Length = 579 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 110/300 (36%), Gaps = 21/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 276 GVAVPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 334 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G F GG + LD F + AL + Sbjct: 335 RLDQLGIDWQGALNAPGIGVGFNNRGGGNVTT----------LDGTKFLASVAALSQTGD 384 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + A + YG +++ P + + Sbjct: 385 ATVISRPIVLTQENVPATFDSNQTFYAKLIGER--AVQLDHVTYGTLVNVLPRLTRDASQ 442 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 443 VEMIVDIEDGNTDGATSDGQIVVDNNAMPLVNRTEINTVARVPREMSLLIGGNTRDDVTR 502 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 503 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPSDNA 562 >gi|167743212|ref|ZP_02415986.1| Type III secretion system protein [Burkholderia pseudomallei 14] Length = 309 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 7 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 66 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 114 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 172 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 233 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 292 >gi|15088592|gb|AAK84103.1|AF369954_1 YsaC [Yersinia enterocolitica] Length = 526 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 82/233 (35%), Gaps = 20/233 (8%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV L + I +V + + +G + G S F+ + Sbjct: 308 SRSQVELSLWIIDVTQSKVDDLGVRWEAGGIGVAGGSSVT-------------FNRSTLS 354 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D +F + A+ + R ++ P + A F + + S+ Sbjct: 355 DSKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARVEGERV--ASLQQVT 412 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGG 366 YG ++ P + + + + E + +P +T + Sbjct: 413 YGTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINTVARIGRDK 472 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++++ G +D +++ + IPLLS IP+LG LF+ N+++ P L+ Sbjct: 473 SLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRLL 525 >gi|167820388|ref|ZP_02452068.1| Type III secretion system protein [Burkholderia pseudomallei 91] Length = 324 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 22 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 80 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 81 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 129 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 130 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 187 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 188 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 247 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 248 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 307 >gi|167850214|ref|ZP_02475722.1| Type III secretion system protein [Burkholderia pseudomallei B7210] Length = 333 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 31 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 89 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 90 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 138 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 139 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 196 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 197 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 256 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 257 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 316 >gi|167898820|ref|ZP_02486221.1| Type III secretion system protein [Burkholderia pseudomallei 7894] Length = 325 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 23 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 81 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 82 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 130 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 131 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 188 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 189 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 248 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 249 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 308 >gi|167828759|ref|ZP_02460230.1| Type III secretion system protein [Burkholderia pseudomallei 9] Length = 326 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 24 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 82 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 83 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 131 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 132 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 189 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 190 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 249 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 250 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 309 >gi|302185350|ref|ZP_07262023.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. syringae 642] Length = 690 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 98/274 (35%), Gaps = 24/274 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 + + I +V R + ++ ++ + GG ++E G S V D+ Sbjct: 306 IEIDAIIVDVDRSQMDELSSNWGLSAGNFS---------GGANIAENGRSSTMFVQDQDK 356 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L ALE + + P++ + Q A + + V + G Sbjct: 357 FFAGLRALEGNGSATVIGNPSVLTLENQPAVIDFSQTEILEAVGERV--ANFQPLTAGTS 414 Query: 316 LHFTPT-VLSPG----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 L P + + G I L + E + + PS R T + ++V+ Sbjct: 415 LQVIPRSITASGAKNQMIQLVVDIEDGQIEESNIRAEQPSVRRGNVSTQAVIAEKASLVV 474 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 G + + + +P LS IPILG LF + E TP LV + R Sbjct: 475 GGFHVYENNERTKKVPYLSAIPILGKLLFTARERGQSNRERLFILTPRLVGDQV--NPMR 532 Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463 D Y + + +R+NKI +E +E + Sbjct: 533 YID-YGNPNHVQ----DRLNKIKERREGAEQPNR 561 >gi|146305065|ref|YP_001185530.1| YscC/HrcC family type III secretion outer membrane protein [Pseudomonas mendocina ymp] gi|145573266|gb|ABP82798.1| type III secretion outer membrane pore, YscC/HrcC family [Pseudomonas mendocina ymp] Length = 696 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 16/246 (6%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + + ++ L++ + + I ++ R+ L ++ + + S GG Sbjct: 301 KAIYQGLIQQLDVPRNL-IEIDAVILDIDRNELAELSSRWAFNSGSVS---------GGA 350 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + E G S + D F L ALE A + P++ + Q A Sbjct: 351 NLFEPGTTSTLFIQDAGRFAAELRALEGTGAASIMGNPSILTLENQPAVIDFSRTEYLTA 410 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGDMPSYRVR 354 ++ ++ G L P L+ G + L + E + + + + PS R Sbjct: 411 LAERV--ANIQPITAGTSLQVIPRSLNQGSRSQVQLIVDIEDGQIIESNISEEQPSVRRG 468 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIA 413 T + G++V+ G + IPLL IP++G LF++ E Sbjct: 469 NVSTQAVIAEHGSLVIGGFHSLEANDRINKIPLLGDIPVIGKLLFQSRNREFNRRERLFI 528 Query: 414 ATPFLV 419 TP L+ Sbjct: 529 LTPRLI 534 >gi|167566206|ref|ZP_02359122.1| Type III secretion system protein [Burkholderia oklahomensis EO147] Length = 315 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 13 GFALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 71 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 72 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 120 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + A + YG +++ P + + Sbjct: 121 ATVISRPIVLTQENVPATFDSNQTFYAKLIGER--AVQLERVTYGTLVNVLPRLTRDASQ 178 Query: 328 IGLRIQTEVSEPVIGVNAG-------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G MP + +T +P ++++ G +DD+ + Sbjct: 179 VEMIVDIEDGNTDGATSDGRIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 238 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 239 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 298 >gi|291569731|dbj|BAI92003.1| bifunctional pilus assembly protein PilQ/type II secretion pathway protein D [Arthrospira platensis NIES-39] Length = 785 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 12/180 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310 F + L A + + L +PTL G++AS + L ++ T S T Sbjct: 585 FLSTLQAQIVSGRAKILTDPTLVVQEGETASVQLVQEVLQSRTTTFTDTPSGTRETIQPQ 644 Query: 311 --DYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADT-TVELP 363 G+ L + G + + I EVS P V G + R + + L Sbjct: 645 LVPVGLTLGVNVQRIDDNGFVTMTINPEVSSPGSQVGTGGDDFVLQIFRRNLQSGRIRLR 704 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G T++++G+++D + IPLL +PILG+LFR S + E E+ + TP ++ Sbjct: 705 DGQTLIVSGIIQDQERTDVSKIPLLGDLPILGSLFRRSSTSSERAEVIVLVTPSILDDSD 764 >gi|148241667|ref|YP_001226824.1| Type II secretory pathway, component PulD [Synechococcus sp. RCC307] gi|147849977|emb|CAK27471.1| Type II secretory pathway, component PulD [Synechococcus sp. RCC307] Length = 760 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 82/180 (45%), Gaps = 13/180 (7%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHD- 311 F + AL R+++ + +A+PTL +S+S G + +S+ G + T Sbjct: 557 QFFDFVKALIRSSSAKVVADPTLLVQESESSSVGVGTTVFVNCSSSTSANGTRNFTPKKE 616 Query: 312 -YGVVLHF-TPTVLSPGRIGLRIQTEVSEPV-----IGVNAGDMPS--YRVRKADT-TVE 361 G+ + + G + L + + P + D+P+ VR+ + Sbjct: 617 TAGLQVDVSVSRIDDNGFVSLALNPVLKAPSGLPVPVNCGGIDLPTRDLAVRELRSGEFR 676 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 + G T++L G++++++ + + PLL +P++G FR S R++ E+ I TP ++ Sbjct: 677 VRDGQTLILTGVIQEEVLESVDKWPLLGDVPLIGQFFRKSSNTRQKRELVIVVTPRILDD 736 >gi|145597786|ref|YP_001161862.1| outer membrane secretin family protein [Yersinia pestis Pestoides F] gi|229837374|ref|ZP_04457537.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|145209482|gb|ABP38889.1| outer membrane secretin family protein [Yersinia pestis Pestoides F] gi|229705497|gb|EEO91507.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] Length = 149 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 11/154 (7%) Query: 323 LSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 RI + + EVS N PS R+RKA+TTVEL G + +L GL+ + Sbjct: 2 NEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTER 61 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439 + + IP + +P+LGALFRN++ R ++E+ + AT LVKPV+ R + PD + Sbjct: 62 ESLKKIPFIGDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTST 119 Query: 440 AKAFF-FNRVNKIYGPKEASEVEGQNYKGAIGFI 472 + FF + K+A E + GFI Sbjct: 120 VERFFNLTNIKDAKRRKQAKE-----FLQKGGFI 148 >gi|167466375|ref|ZP_02331079.1| putative outer membrane secretin family protein [Yersinia pestis FV-1] Length = 140 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 8/130 (6%) Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 PS R+RKA+TTVEL G + +L GL+ ++ + IP + IP+LGALFRN++ Sbjct: 17 GGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDIPLLGALFRNAQT 76 Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF-FNRVNKIYGPKEASEVEG 462 R ++E+ + AT LVKPV+ R + PD + + FF + K+A E Sbjct: 77 QRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFFNLTNIKDAKRRKQAKE--- 131 Query: 463 QNYKGAIGFI 472 + GFI Sbjct: 132 --FLQKGGFI 139 >gi|187735593|ref|YP_001877705.1| type II and III secretion system protein [Akkermansia muciniphila ATCC BAA-835] gi|187425645|gb|ACD04924.1| type II and III secretion system protein [Akkermansia muciniphila ATCC BAA-835] Length = 907 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 54/378 (14%), Positives = 109/378 (28%), Gaps = 136/378 (35%) Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQH-----------------SITGSSSGPSKSFA 231 QV + EV ++ +++GF + S SF Sbjct: 513 TRGESQQVRIMTKFVEVTQENTEELGFDWIVTPFSVSNDRSTFLGGGTNYGTGSTSDSFT 572 Query: 232 ADFGG--------------KFVSEG--------------------------------GDF 245 GG V+ G G Sbjct: 573 QSPGGVTGWPVNSGSDTINGLVTGGNRTGDYAITKNSVDNLLNSTNRSEASQKNAAPGIM 632 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------- 297 S+ G+ D SF+ ++ L + L P++TA SG++A + Y T Sbjct: 633 SLTGIYDEGSFQMLMRGLSQKKGSDVLTAPSVTAKSGETAKIEIIREFWYPTEYEPPELP 692 Query: 298 -------------------VSSSTGATSVTT-----------------HDYGVVLHFTPT 321 + + GV L PT Sbjct: 693 NSVGNSGYNNGYGYGNNGNIVDGLLGNQIQPQISSFPVTPATPGVFEMKPVGVTLEVVPT 752 Query: 322 VLSPGRIGLRIQTEVSEP--------------------------VIGVNAGDMPSYRVRK 355 + + + + + S + N + P + R Sbjct: 753 I-GDNKYIIDLNFKPSIVEFEGFVNYGSPIQSTGVGSDGKPMSLTLTENRIEQPIFSKRS 811 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 +T++ + G T+ + GL+ +++Q +++ +P+ +P++G FR++ N + + I T Sbjct: 812 VETSLFIYDGHTVAIGGLITENVQTVEDKVPIFGDLPLIGRFFRSNSDNHIKKNLMIFVT 871 Query: 416 PFLVKPV--AMRDLSRPD 431 ++ +R + P Sbjct: 872 GQIIDATGQPVRGNALPT 889 >gi|83717183|ref|YP_439025.1| type III secretion system protein BsaO [Burkholderia thailandensis E264] gi|83651008|gb|ABC35072.1| type III secretion system protein BsaO [Burkholderia thailandensis E264] Length = 619 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 317 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 375 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 376 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 424 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + T + YG +++ P + + Sbjct: 425 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 482 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 483 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 542 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ +P++G LFR E+ P L++ A +P + D+A Sbjct: 543 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 602 >gi|318607000|emb|CBY28498.1| general secretion pathway protein D [Yersinia enterocolitica subsp. palearctica Y11] Length = 531 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 74/206 (35%), Gaps = 12/206 (5%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----SKSFAADFGGK 237 +V+ L+I QV ++ I E + +G Q + + S + Sbjct: 327 DQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKTNSIQTNNNSG 385 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + +++ + AL + LA P++ + A F G + T Sbjct: 386 NPIPMMMAGLTAGFYKGNWDGLFIALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 445 Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PS 350 + +T S++ GV+L P + + L I+ EVS + Sbjct: 446 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSDVNANNLGSV 505 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKD 376 + R + V + SG T+V+ GLL Sbjct: 506 FNKRVVNNAVLVKSGETVVVGGLLDK 531 >gi|262277342|ref|ZP_06055135.1| putative outer membrane protein [alpha proteobacterium HIMB114] gi|262224445|gb|EEY74904.1| putative outer membrane protein [alpha proteobacterium HIMB114] Length = 544 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 102/266 (38%), Gaps = 30/266 (11%) Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI-----GFQHSITGSSSGPSKSFAADFG 235 ++K+++ ++I + V ++ I K+ + G G ++S Sbjct: 282 TEKLLDKIDIERKS-VMIEAFIVNAEDGFAKKFDANLEMISSTAAGDFRGGNQSGIGTII 340 Query: 236 GKFVSEG----------------------GDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G +G G + G + R + A T T++ Sbjct: 341 GATNPQGNQLEVGTPSPSADTSLTAPTLQGGTLIIGSIGRALLSATIAASVSDTNSETIS 400 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 P + AI GQ A+ + G Q + +S A T D+ + TPT++ ++ L+I Sbjct: 401 NPKIFAIDGQQATISQGTQQVRSVPASGGDAGGFETLDFTLNFGVTPTIVGD-KVRLQIS 459 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 G + P +TV L +G +L G+ K+ Q +PLL +IP+ Sbjct: 460 LANDSLGQGGTDANTP-KNTENVTSTVVLNNGDVAILGGVYKNTKQDDIIFVPLLHRIPV 518 Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419 LG F+ + ++++ I T +V Sbjct: 519 LGEFFKKKTKSDTKSQLLIFVTANIV 544 >gi|323530312|ref|YP_004232464.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. CCGE1001] gi|323387314|gb|ADX59404.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. CCGE1001] Length = 610 Score = 117 bits (293), Expect = 5e-24, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 28/240 (11%) Query: 206 RRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEG----------G 243 + LKQIG + T +G + + FG + +S+G G Sbjct: 373 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLSDGTTVINTTPVGG 432 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SST 302 + ++AL+++ + A P + ++ A + + +S Sbjct: 433 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 492 Query: 303 GATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTV 360 SV+T GV L P V GR +++ + + ++P +T Sbjct: 493 DLYSVST---GVSLRVLPLVVEENGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTES 549 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + G+P LSKIP++GALFR R E +P +++ Sbjct: 550 FVGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGALFRYRDDQRSHMERLFLLSPRIIE 609 >gi|257142133|ref|ZP_05590395.1| type III secretion system protein BsaO [Burkholderia thailandensis E264] Length = 600 Score = 117 bits (293), Expect = 5e-24, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 298 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 356 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 357 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 405 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + T + YG +++ P + + Sbjct: 406 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 463 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 464 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 523 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ +P++G LFR E+ P L++ A +P + D+A Sbjct: 524 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 583 >gi|56751665|ref|YP_172366.1| type IV pilus assembly protein PilQ [Synechococcus elongatus PCC 6301] gi|56686624|dbj|BAD79846.1| type IV pilus assembly protein PilQ [Synechococcus elongatus PCC 6301] Length = 725 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 125/328 (38%), Gaps = 44/328 (13%) Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 ++ LS G Q N ++ ++ L++ + Q ++ V + ++ + L I S Sbjct: 395 ADIRTNSLSIVGDPQAINFAT-GLIQQLDLR-KRQASVNVKVIDLDLNDLNAIATSFSFG 452 Query: 221 -----GSSSGPSKSFAADFGGKFVSEGGD--FSVKGVLDRFS---------------FET 258 S SG ++ D G + D F+ + + F Sbjct: 453 IGNTLFSGSGGLRTTVIDNAGSVIQPPNDSVFNPSNLPAGINPANPLLALPNQLTNNFLG 512 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFT----SGGQHLYKTVSSSTGATSVTTH---- 310 L A + L +PTL G+ + + +T ++ +G +V+ Sbjct: 513 ALSASIINNKTKLLTDPTLIIQEGERSEVKLTSQVVQKIESETTTNGSGPPTVSRTIDLA 572 Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADT-TVE 361 D G+ L + G I L + +S P N + R+ + + Sbjct: 573 DVGLQLTINIERIDDNGFITLTVLPAISSPQDVVTFGDPNTNGVLTTLIKKREVSSGKIR 632 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L T++L+G+++D+ ++ IPLL +P++G+LFR S +R+ E+ + TP ++ Sbjct: 633 LRDSQTLILSGIIQDEERERVAKIPLLGDLPLIGSLFRTSYTDRQRREVVVVITPKILAD 692 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 D + Y A++ N + Sbjct: 693 T---DATVFGYGYQPSPPAQSVLNNTLQ 717 >gi|81301259|ref|YP_401467.1| general secretion pathway protein D [Synechococcus elongatus PCC 7942] gi|81170140|gb|ABB58480.1| general secretion pathway protein D [Synechococcus elongatus PCC 7942] Length = 771 Score = 117 bits (292), Expect = 6e-24, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 125/328 (38%), Gaps = 44/328 (13%) Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 ++ LS G Q N ++ ++ L++ + Q ++ V + ++ + L I S Sbjct: 441 ADIRTNSLSIVGDPQAINFAT-GLIQQLDLR-KRQASVNVKVIDLDLNDLNAIATSFSFG 498 Query: 221 -----GSSSGPSKSFAADFGGKFVSEGGD--FSVKGVLDRFS---------------FET 258 S SG ++ D G + D F+ + + F Sbjct: 499 IGNTLFSGSGGLRTTVIDNAGSVIQPPNDSVFNPSNLPAGINPANPLLALPNQLTNNFLG 558 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFT----SGGQHLYKTVSSSTGATSVTTH---- 310 L A + L +PTL G+ + + +T ++ +G +V+ Sbjct: 559 ALSASIINNKTKLLTDPTLIIQEGERSEVKLTSQVVQKIESETTTNGSGPPTVSRTIDLA 618 Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADT-TVE 361 D G+ L + G I L + +S P N + R+ + + Sbjct: 619 DVGLQLTINIERIDDNGFITLTVLPAISSPQDVVTFGDPNTNGVLTTLIKKREVSSGKIR 678 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 L T++L+G+++D+ ++ IPLL +P++G+LFR S +R+ E+ + TP ++ Sbjct: 679 LRDSQTLILSGIIQDEERERVAKIPLLGDLPLIGSLFRTSYTDRQRREVVVVITPKILAD 738 Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 D + Y A++ N + Sbjct: 739 T---DATVFGYGYQPSPPAQSVLNNTLQ 763 >gi|209528276|ref|ZP_03276739.1| type II and III secretion system protein [Arthrospira maxima CS-328] gi|209491296|gb|EDZ91688.1| type II and III secretion system protein [Arthrospira maxima CS-328] Length = 737 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 12/180 (6%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGATSVT 308 F + L A + + L +PTL G+SAS Q + T S S Sbjct: 537 FLSTLQAQIVSGRAKILTDPTLVVKEGESASVQLVQQVLQSRTTIITDTPSGSRETIQPD 596 Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELP 363 + G+ L + G + + I EVS P V G+ + +R + + L Sbjct: 597 PTNVGLTLGVNVERIDDNGFVTMSINPEVSSPGARVATGNDDFFLQVFRRSLSSGRIRLR 656 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 G T++++G+++D + IPLL +PI+G+LFR S + E E+ + TP ++ Sbjct: 657 DGQTLIVSGIIQDQERTDVSKIPLLGDLPIVGSLFRRSTTSSERAEVIVLVTPNILDDSD 716 >gi|8996028|gb|AAF82327.1|AF005744_3 YsaC [Yersinia enterocolitica] Length = 525 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 21/233 (9%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 QV L + I +V + + +G + G G V+ F+ + Sbjct: 308 SRSQVELSLWIIDVTQSKVDDLGVRWEAGG----------IGVAGGSVT----FNRSTLS 353 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 D +F + A+ + R ++ P + A F + + S+ Sbjct: 354 DSKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARVEGERV--ASLQQVT 411 Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGG 366 YG ++ P + + + + E + +P +T + Sbjct: 412 YGTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINTVARIGRDK 471 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++++ G +D +++ + IPLLS IP+LG LF+ N+++ P L+ Sbjct: 472 SLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRLL 524 >gi|307725648|ref|YP_003908861.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. CCGE1003] gi|307586173|gb|ADN59570.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia sp. CCGE1003] Length = 610 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 86/240 (35%), Gaps = 28/240 (11%) Query: 206 RRDILKQIGFQHSITGSS----SGPSKSFAADFGGKF------------------VSEGG 243 + LKQIG S +G + + G GG Sbjct: 373 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLADGTTVINTTPVGG 432 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SST 302 + ++AL+++ + A P + ++ A + + +S Sbjct: 433 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 492 Query: 303 GATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTV 360 SV+T GV L P V GR +++ + + ++P +T Sbjct: 493 DLYSVST---GVSLRVLPLVVEENGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTES 549 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + G+P LSKIP++GALFR R E +P +++ Sbjct: 550 FVGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGALFRYRDDQRSHMERLFLLSPRIIE 609 >gi|320107861|ref|YP_004183451.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] gi|319926382|gb|ADV83457.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] Length = 638 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 66/362 (18%), Positives = 116/362 (32%), Gaps = 69/362 (19%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHG-MVRTIQDSQRAVELS----------ETFLSQ 170 L R + I V S VV+ G + EL+ + Sbjct: 278 DLANMTRALFGLTQIAVNTQSGAVVIRGPQAVVHRVHDLFTELASRTSDILFDINIYEVD 337 Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLK-------------VTIAEVRRDILKQIGFQH 217 + + +++A Q + + Sbjct: 338 KSTTRNIGFAPPTSATAIDVASTAQKLISDNQSLLSQSISSGALTLSGSTYDQELQEVAF 397 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + SG S SF + G G F +L T L+ L +T R L L Sbjct: 398 LVAAGVSG-SSSFTSILGTL-----GSFDGIPLLGISMSSTSLNMLLNSTDARMLNALQL 451 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATS------------------------------- 306 + Q +F G ++ T +++ ++S Sbjct: 452 RSSDRQEVTFRVGSRYPILTAITTSASSSDVANELAAAGVSSSVIAQLTGSSGSGSTSTP 511 Query: 307 -VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 + D G+ L TP VL G + L + ++ E + G D+P R + V +P G Sbjct: 512 QIQFEDIGLTLKITPRVLRSGEVQLDLDFKL-ESLAGTGVDDIPILNNRALKSVVTIPPG 570 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLVKPVA 423 T +LA L+ + + +G+P L +P F+++ N + + E+ I TP +V Sbjct: 571 ETTMLAALVSTNETKALDGVPGLDNLPG----FQSTDRNADGAKDELLITVTPHIVSGST 626 Query: 424 MR 425 R Sbjct: 627 TR 628 >gi|126659012|ref|ZP_01730153.1| general secretion pathway protein D [Cyanothece sp. CCY0110] gi|126619669|gb|EAZ90397.1| general secretion pathway protein D [Cyanothece sp. CCY0110] Length = 743 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 15/181 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----H 310 F + ++ + L +PTL GQ A+ + + + + V T Sbjct: 534 FLAQIETNIQSGNAKILTDPTLVVQEGQEATVKLTQKVIENITTQVDPLSGVRTTTPVLQ 593 Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQT------EVSEPVIGVNAGDMPSY--RVRKADT-TV 360 D G+ L + G I L + +V G + G + R+ + + Sbjct: 594 DAGLTLAINVDKIDDNGYINLTVSPTIAAVGDVQAFDAGADGGTNNLFLLNRRELSSGLI 653 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G T++L+G++ + Q +PLL IP+LGALFR+ + TE+ + TP ++ Sbjct: 654 RLRDGQTLILSGIISESDQSTTSKVPLLGDIPLLGALFRSQTDTSQRTEVIVLLTPQILH 713 Query: 421 P 421 Sbjct: 714 D 714 >gi|167573316|ref|ZP_02366190.1| Type III secretion system protein [Burkholderia oklahomensis C6786] Length = 302 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 111/295 (37%), Gaps = 22/295 (7%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 D RAV +T + ++ L++ + Q+ L + I ++R+ L Q+ Sbjct: 5 ASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKSRLDQL 63 Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273 G ++ G G F + GG+ + LD F + AL + ++ Sbjct: 64 GIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGDATVIS 112 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRI 332 P + A+F S K + A + YG +++ P + ++ + + Sbjct: 113 RPIVLTQENVPATFDSNQTFYAKLIGER--AVQLEHVTYGTLVNVLPRLTRDASQVEMIV 170 Query: 333 QTEVSEPVIGVNAG-------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 E + G MP + +T +P ++++ G +DD+ + I Sbjct: 171 DIEDGNTDGATSDGRIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTRRTFRI 230 Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 P L+ IP++G LFR E+ P L++ A +P + D+A Sbjct: 231 PGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 285 >gi|325529582|gb|EGD06465.1| Type II secretory pathway, component PulD [Burkholderia sp. TJI49] Length = 397 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 42/312 (13%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 RD+A+L TL+ V+ V + G + S + S L + Sbjct: 108 RDVAYLSETLQPLFEGR----FAVNRQVSVPGATPSPLSSP---QGSAASLVSRDSDHLV 160 Query: 178 NSSSKKVMNLLNIAGED------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 SK + + + +V ++ + EV+ TG S+G + S A Sbjct: 161 FVGSKAEIEKVKLLLPQIDIAMGEVMVRGVVYEVQ-------------TGDSNGSAFSLA 207 Query: 232 ADFG---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 A G F + L F VL AL R +++P+L SG A+F+ Sbjct: 208 ASLLKGKLNITLAGNPFDNQVSLSTSDFSAVLSALSSDNRFRVVSQPSLRVRSGAEATFS 267 Query: 289 SGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G + S SV D GV+ + P V + L + ++S V Sbjct: 268 VGAEVPVLGAVSYAQGSGEPIQSVQYRDSGVIFNLRPQVRES-TVDLVVDQQLSNFVQTT 326 Query: 344 NA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + P+ R+ T+V++ I+L GL ++ G+ L K LFR++ Sbjct: 327 TGVNNSPTLTKRQLTTSVQMRDREVILLGGLTEEKTSDNSTGLSFLPK------LFRSNT 380 Query: 403 FNREETEIFIAA 414 +EI + Sbjct: 381 SEASNSEILLVI 392 >gi|45751679|emb|CAF21323.1| InvG protein [Burkholderia mallei] Length = 278 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 107/284 (37%), Gaps = 22/284 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 7 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 66 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 114 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 172 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 IP L+ IP++G LFR E+ P L++ A Sbjct: 233 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 276 >gi|167577430|ref|ZP_02370304.1| type III secretion system protein BsaO [Burkholderia thailandensis TXDOH] Length = 339 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 114/302 (37%), Gaps = 22/302 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 + G+ D RAV +T + ++ L++ + Q+ L + I ++R Sbjct: 35 VGGVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIR 93 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 94 KSRLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQT 142 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP- 325 ++ P + A+F S K + T + YG +++ P + Sbjct: 143 GDATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDA 200 Query: 326 GRIGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 ++ + + E + G + P + +T +P ++++ G +DD+ Sbjct: 201 SQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDV 260 Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438 + IP L+ IP++G LFR E+ P L++ A +P + D Sbjct: 261 TRRTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPAD 320 Query: 439 DA 440 +A Sbjct: 321 NA 322 >gi|113475300|ref|YP_721361.1| type II and III secretion system protein [Trichodesmium erythraeum IMS101] gi|110166348|gb|ABG50888.1| type II and III secretion system protein [Trichodesmium erythraeum IMS101] Length = 801 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 18/206 (8%) Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YKTVSSSTGAT-- 305 +L F + L A + + L +PTL G+ AS + + + G T Sbjct: 587 ILYPKRFLSQLRATIVSGNAKILTDPTLVVQEGEVASLKLVNNIVRSIDSNFTDDGGTSR 646 Query: 306 ---SVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRK 355 +V D G+ L + G + + + EVS ++ RK Sbjct: 647 ETRTVQFEDVGLNLVIQVERIDDNGFVTVTVNPEVSFISDRVRTDANNSSEFGTEIASRK 706 Query: 356 ADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + + L G T++++G++++ + +PLL +PI+GALFR+S+ E E + Sbjct: 707 VQSGRIRLRDGQTLIISGIIQEQERTAVTKVPLLGDLPIIGALFRSSQNQNERAETIVLL 766 Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDA 440 TP ++ D S Y+ DA Sbjct: 767 TPQILDD---GDRSSWGYRYNPSPDA 789 >gi|170690596|ref|ZP_02881763.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia graminis C4D1M] gi|170145031|gb|EDT13192.1| type III secretion outer membrane pore, YscC/HrcC family [Burkholderia graminis C4D1M] Length = 609 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 28/240 (11%) Query: 206 RRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEG----------G 243 + LKQIG + T +G + + FG + +S+G G Sbjct: 372 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLSDGTTVINTTPLGG 431 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SST 302 + ++AL+++ + A P + ++ A + + +S Sbjct: 432 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 491 Query: 303 GATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTV 360 SV+T GV L P V GR +++ + + ++P +T Sbjct: 492 DLYSVST---GVSLRVLPLVVEESGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTES 548 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G ++++AG D + G+P LSKIP++G LFR R E +P +++ Sbjct: 549 FVGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGGLFRYRDDQRSHMERLFLLSPRIIE 608 >gi|285018275|ref|YP_003375986.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans GPE PC73] gi|283473493|emb|CBA15996.1| probable xanthomonas secretion apparatus protein [Xanthomonas albilineans] Length = 626 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 63/378 (16%), Positives = 126/378 (33%), Gaps = 46/378 (12%) Query: 52 IGLNKVIILQVPVDVQDVLVSDPTKADVV--VHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + L+ ++ ++D +V P ADV+ + + G + G + Sbjct: 227 VPLHNTFVVNRRYKIRDEMVKVPGVADVIHELFGSSS----GAHPQST------PSGSSV 276 Query: 110 LNLDILIERDIAHL-----EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 L++ + D+ +L ++ + V M + V MV D+ + Sbjct: 277 LDMQQDVPADVLNLPLPKSSDAKAEDLSGRDRMVAMKGEAVWDVRMVPNPDDNSILLYGP 336 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224 + R +A +K+ Q+ L + I +V R L +G + Sbjct: 337 SAHVELMERAIHAVDVAKR-----------QIELSLWIIDVDRQKLNALGIDWQSSARYG 385 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 + S + L+ F + AL + ++ P + Sbjct: 386 SFTMS-------------ANSPQMASLNGIKFLATVSALSKRGLANIVSRPIVLTEENVP 432 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341 A F + Y+ V A S+ YG ++ P + G + + + + Sbjct: 433 AIFDNSHTQYYQLVGER--AVSLEHFTYGTMVSVLPRLTQDGEVEMIVTVRDGQSQNSST 490 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 N +P + T +P +++L G D + IP LSK+P++G LFR Sbjct: 491 AKNTTVIPEVSDTQISTVARVPKFKSLLLGGSTIDRHENDTSYIPGLSKLPVVGRLFRLD 550 Query: 402 RFNREETEIFIAATPFLV 419 + E P ++ Sbjct: 551 KTITEHMVRLFLIQPRVL 568 >gi|32307038|gb|AAP79008.1| MxiD [Shigella flexneri] Length = 566 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L++A + + L + I ++ + L +G + SF FG F + Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 LD F + AL + ++ P + A F + V +S+ Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360 YG +++ P S G+I + + E + N +P K T Sbjct: 402 EHVTYGTLINVIPRFSSQGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P G ++++ G + IP LS IP++G +F+ N FL++ Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTRNISN-----IVRVFLIQ 516 Query: 421 PVAMRDLS 428 P +++ S Sbjct: 517 PREIKESS 524 >gi|187734437|ref|YP_001883208.1| type III secretion outer membrane protein MxiD [Shigella boydii CDC 3083-94] gi|187426933|gb|ACD06208.1| type III secretion outer membrane protein MxiD [Shigella boydii CDC 3083-94] Length = 566 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L++A + + L + I ++ + L +G + SF FG F + Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 LD F + AL + ++ P + A F + V +S+ Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360 YG +++ P S G+I + + E + N +P K T Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P G ++++ G + IP LS IP++G +F+ N FL++ Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQ 516 Query: 421 PVAMRDLS 428 P +++ S Sbjct: 517 PREIKESS 524 >gi|15042148|gb|AAK81929.1|AF292566_13 RscC [Pseudomonas fluorescens] Length = 713 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 86/274 (31%), Gaps = 20/274 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + ++ L++A + + + I ++ R L++ G S F G Sbjct: 318 RDLITQLDVARKL-IEIDAIILDIERTQLREFGVNWGFQNSR----------FRGGVNMA 366 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G S + R F + + ++ P++ + Q A Sbjct: 367 PGTSSQVSIDHRDRFYADMPSTGGQGPATMVSNPSVLTLENQPAVIDFNRTQYISPGRDY 426 Query: 302 TGATSVTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRK--A 356 VT G L P V + +I L + E D VR+ Sbjct: 427 ATILPVT---VGTSLQVVPRVTTGRGVHQIHLVVDIEDGNLDETNPERDPNHLDVRRGKV 483 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAAT 415 T + ++V+ G D ++ IPLL IP+LG L ++ + E T Sbjct: 484 STQAVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKTLVSSTERHNNRRERLFILT 543 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449 P ++ P D + A R + Sbjct: 544 PRVIGDQDDPSRYLPQDDQAELQAALTPLARRYS 577 >gi|31983567|ref|NP_858278.1| outermembrane protein MxiD [Shigella flexneri 2a str. 301] gi|18462559|gb|AAL72331.1| MxiD, outermembrane protein of the secretin family, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] gi|281603900|gb|ADA76883.1| MxiD, outermembrane protein of the secretin family, component of the Mxi-Spa secretion machinery [Shigella flexneri 2002017] gi|333003155|gb|EGK22704.1| hypothetical protein SFK218_2878 [Shigella flexneri K-218] gi|333020387|gb|EGK39651.1| hypothetical protein SFK304_1148 [Shigella flexneri K-304] Length = 566 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 23/243 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + + L + I ++ + L +G + SF FG F + LD Sbjct: 298 KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSASISTLD 348 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F + AL + ++ P + A F + V +S+ Y Sbjct: 349 GNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSLEHVTY 406 Query: 313 GVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G +++ P S G+I + + E + N +P K T +P G Sbjct: 407 GTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQG 466 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G + IP LS IP++G +F+ N FL++P ++ Sbjct: 467 KSLLIGGYTHETNSNEIISIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQPREIK 521 Query: 426 DLS 428 + S Sbjct: 522 ESS 524 >gi|13449092|ref|NP_085308.1| Type III secretion protein [Shigella flexneri 5a] gi|547951|sp|Q04641|MXID_SHIFL RecName: Full=Outer membrane protein mxiD; Flags: Precursor gi|13310640|gb|AAK18464.1|AF348706_153 Type III secretion protein [Shigella flexneri 5a] gi|47042|emb|CAA47644.1| MXID [Shigella flexneri] gi|12329089|emb|CAC05820.1| MxiD, outermembrane protein of the secretin family, component of the Mxi-Spa secretion machinery [Shigella flexneri] Length = 566 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L++A + + L + I ++ + L +G + SF FG F + Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 LD F + AL + ++ P + A F + V +S+ Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360 YG +++ P S G+I + + E + N +P K T Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P G ++++ G + IP LS IP++G +F+ N FL++ Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIISIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQ 516 Query: 421 PVAMRDLS 428 P +++ S Sbjct: 517 PREIKESS 524 >gi|194435190|ref|ZP_03067420.1| type III secretion outer membrane pore, YscC/HrcC family [Shigella dysenteriae 1012] gi|194416569|gb|EDX32708.1| type III secretion outer membrane pore, YscC/HrcC family [Shigella dysenteriae 1012] Length = 566 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L++A + + L + I ++ + L +G + SF FG F + Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 LD F + AL + ++ P + A F + V +S+ Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360 YG +++ P S G+I + + E + N +P K T Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P G ++++ G + IP LS IP++G +F+ N FL++ Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQ 516 Query: 421 PVAMRDLS 428 P +++ S Sbjct: 517 PREIKESS 524 >gi|333011815|gb|EGK31216.1| hypothetical protein SFK227_5449 [Shigella flexneri K-227] gi|333011862|gb|EGK31255.1| hypothetical protein SFK227_5390 [Shigella flexneri K-227] Length = 566 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L++A + + L + I ++ + L +G + SF FG F + Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 LD F + AL + ++ P + A F + V +S+ Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360 YG +++ P S G+I + + E + N +P K T Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P G ++++ G + IP LS IP++G +F+ N FL++ Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQ 516 Query: 421 PVAMRDLS 428 P +++ S Sbjct: 517 PREIKESS 524 >gi|74314944|ref|YP_313362.1| MxiD [Shigella sonnei Ss046] gi|73858421|gb|AAZ91127.1| MxiD [Shigella sonnei Ss046] Length = 566 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L++A + + L + I ++ + L +G + SF FG F + Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 LD F + AL + ++ P + A F + V +S+ Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360 YG +++ P S G+I + + E + N +P K T Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P G ++++ G + IP LS IP++G +F+ N FL++ Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQ 516 Query: 421 PVAMRDLS 428 P +++ S Sbjct: 517 PREIKESS 524 >gi|167615580|ref|ZP_02384215.1| type III secretion system protein BsaO [Burkholderia thailandensis Bt4] Length = 351 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 113/300 (37%), Gaps = 22/300 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 49 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 107 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 108 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 156 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + T + YG +++ P + + Sbjct: 157 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 214 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 215 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 274 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440 IP L+ +P++G LFR E+ P L++ A +P + D+A Sbjct: 275 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 334 >gi|2495097|sp|Q55293|MXID_SHISO RecName: Full=Outer membrane protein mxiD; Flags: Precursor gi|829072|dbj|BAA09154.1| ORF14 [Shigella sonnei] Length = 566 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L++A + + L + I ++ + L +G + SF FG F + Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 LD F + AL + ++ P + A F + V +S+ Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360 YG +++ P S G+I + + E + N +P K T Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P G ++++ G + IP LS IP++G +F+ N FL++ Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQ 516 Query: 421 PVAMRDLS 428 P +++ S Sbjct: 517 PREIKESS 524 >gi|45751675|emb|CAF21321.1| InvG protein [Burkholderia mallei NCTC 10247] Length = 272 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 107/285 (37%), Gaps = 22/285 (7%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 2 AGVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRK 60 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 61 SRLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTG 109 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 110 DATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGS 167 Query: 328 -IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 + + + E + G + P + +T +P ++++ G +DD+ Sbjct: 168 QVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVT 227 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + IP L+ IP++G LFR E+ P L++ A Sbjct: 228 RRTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 272 >gi|82524589|ref|YP_406184.1| MxiD [Shigella dysenteriae Sd197] gi|81243987|gb|ABB64696.1| MxiD [Shigella dysenteriae Sd197] Length = 566 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 24/248 (9%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 L++A + + L + I ++ + L +G + SF FG F + Sbjct: 294 LDVA-KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 LD F + AL + ++ P + A F + V +S+ Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360 YG +++ P S G+I + + E + N +P K T Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSLSNYNYNNENTSVLPEVGRTKISTIA 461 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +P G ++++ G + IP LS IP++G +F+ N FL++ Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQ 516 Query: 421 PVAMRDLS 428 P +++ S Sbjct: 517 PREIKESS 524 >gi|45751739|emb|CAF25120.1| InvG protein [Burkholderia pseudomallei] Length = 270 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 107/284 (37%), Gaps = 22/284 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 1 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 59 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 60 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 108 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327 ++ P + A+F S K + T + YG +++ P + G Sbjct: 109 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 166 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 167 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 226 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 IP L+ IP++G LFR E+ P L++ A Sbjct: 227 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 270 >gi|17228526|ref|NP_485074.1| general secretion pathway protein D [Nostoc sp. PCC 7120] gi|17130377|dbj|BAB72988.1| general secretion pathway protein D [Nostoc sp. PCC 7120] Length = 823 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 18/207 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVT 308 L A + L +PTL GQ+A+ + + S +ST + Sbjct: 613 LLANLQAQVTNGNAKILTDPTLIVQEGQTANVKLTQEVVGNITSETTRGDGASTQTVTAE 672 Query: 309 THDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGV------NAGDMPSYRVRKADT-TV 360 D G+ L + G + L + V P N+ + R ++ + Sbjct: 673 KTDVGLTLAVKIDRIDDNGFVSLSVAPVVKAPQSSAVINVSGNSQTIFLVSERSLNSGMI 732 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G T++L+G+++D + IP+L IP++G+LFR + E E+ + TP + Sbjct: 733 RLRDGQTLILSGIIQDQDRTSVSKIPILGDIPLIGSLFRKTNRTNERREVIVLLTPQV-- 790 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + S +YS + + R Sbjct: 791 -MDDSQNSSYGYNYSPSPEVRQMLERR 816 >gi|299140102|ref|ZP_07033271.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] gi|298597948|gb|EFI54117.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX8] Length = 654 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 40/237 (16%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + F G G + + + L+A + RTL + + A Q Sbjct: 413 NASQFTNLLGVLGHFSGLPLAGVFLGSNTNLNLSLNA----SDARTLDDIQVRANDNQPV 468 Query: 286 SFTSGGQHLYKTVSSSTGATS---------------------------------VTTHDY 312 +F +G ++ T + S+G ++ + D Sbjct: 469 NFRAGTRYPITTSTYSSGGSNSLPSSLAGVNVGGTNLNTLLQQYLGTSTVTIPQIQYEDL 528 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G+ + TP +L G + L ++ ++ G N G +P R +T+ +P+G +LA Sbjct: 529 GITVKTTPRILRSGDVRLTLELKIEALGTGSNDG-IPILTNRSLTSTITVPAGKEALLAS 587 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + D + GIP L++IP N + E+ I TP +V+ MR S+ Sbjct: 588 EISRDESRSMSGIPGLNEIPGFQG--TNEDKEVDTDELLITITPHIVRAGDMRIASK 642 >gi|312171371|emb|CBX79630.1| Type III secretory protein InvG [Erwinia amylovora ATCC BAA-2158] Length = 589 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 52/329 (15%), Positives = 117/329 (35%), Gaps = 33/329 (10%) Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM----VSDTVVLHG----MVRTIQD 156 G+ I ++ + L+ A+ + + + G + T Q+ Sbjct: 240 SGRNTTAAQITVDNST---QQALQAASANQDGNFRPLPIFAATSQAESGGNNDIAATEQN 296 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 S V ++T + S + +++ ++I + Q+ L + I +V +D + ++G + Sbjct: 297 SVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIP-KQQIQLSLWIIDVSKDDINELGVR 355 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 + +F + S + F + AL + ++ P Sbjct: 356 WQGSAKVGNGGITF-------------NTSSLTQANSIHFLADVSALAQKGNAHVVSRPE 402 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTE 335 + A F + K + T +S+ YG ++ P + I + + + Sbjct: 403 ILTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRLDQYQHEIEMILNIQ 460 Query: 336 -----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ +P + T +P G ++++ G ++ +Q GIPLL Sbjct: 461 DGGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRNQDEQHSLGIPLLRD 520 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 IP +G LF S + ++ P L+ Sbjct: 521 IPYMGRLFDYSYVSHKKMVRLFLIQPRLM 549 >gi|78779577|ref|YP_397689.1| Type II secretory pathway component PulD-like [Prochlorococcus marinus str. MIT 9312] gi|78713076|gb|ABB50253.1| Type II secretory pathway component PulD-like protein [Prochlorococcus marinus str. MIT 9312] Length = 556 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 82/251 (32%), Gaps = 32/251 (12%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + QV L V + +V + S P +++ + D Sbjct: 290 QKQVALNVKVLDVNLSDKDSFSQSWFLPFGSGSPY----------IITQSPNLKAGIGPD 339 Query: 253 RFS--FETVLHALERATAIRTLAEPTLTAISG---------------QSASFTSGGQHLY 295 R + L A + + LA PTL G Q Sbjct: 340 RLGKFVSSELTASIQKGTTKVLASPTLILNESGGSAGDGSSIGRRLANEGFVEVGDQVPV 399 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIG---VNAGDMPSY 351 + T G+ L + + + V+ N G++ Sbjct: 400 NATFVEGSGCNFTYDLVGIKLGAKVLGIDRNRFVTFAMTPIVTGISGTQTITNCGEVNLL 459 Query: 352 RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+ DT V + +G T+VL G+++D + P+L +PI+G LFR++ + E+ Sbjct: 460 NTRRLDTGAVRIKNGETLVLTGVIQDSDIETLVKFPILGDLPIMGPLFRSTSKEVGKREL 519 Query: 411 FIAATPFLVKP 421 + TP ++ Sbjct: 520 IVLVTPRIIDD 530 >gi|167950797|ref|ZP_02537871.1| type IV pilus secretin PilQ [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 263 Score = 113 bits (284), Expect = 5e-23, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 45/228 (19%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228 ++++ L+I QV ++ I D K +G + T S+S S Sbjct: 37 RRLLQRLDIP-VRQVLIESRIVIANNDFTKALGVRFGATTSASAGSNEALIAGGMPGHIS 95 Query: 229 SFAADFGGKFVSEGGDFSVKGV------------------------------LDRFSFET 258 SF D G + G G+ + + + Sbjct: 96 SFGIDKGTFMTTTTGQPIAAGIEIPAGSGNEALMVNLPATAPSGAINFLVGKVGSYLLQL 155 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 L A++ ++ P + A+ G + Y+ +SS GATSV+ + + L Sbjct: 156 ELSAMQSEGKGEVISSPRVITSDQNKATIKQGVEIPYQEATSS-GATSVSFKEAVLKLDV 214 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 TP + RI + ++ P + +P RK +TTV + +G Sbjct: 215 TPHITPDDRIRMDLEINKDSPDFSRSVLGVPPLDTRKIETTVLVDNGE 262 >gi|323166425|gb|EFZ52190.1| hypothetical protein SS53G_3269 [Shigella sonnei 53G] Length = 476 Score = 113 bits (284), Expect = 5e-23, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 23/243 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + + L + I ++ + L +G + SF FG F + LD Sbjct: 208 KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSASISTLD 258 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F + AL + ++ P + A F + V +S+ Y Sbjct: 259 GNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSLEHVTY 316 Query: 313 GVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G +++ P S G+I + + E + N +P K T +P G Sbjct: 317 GTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQG 376 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G + IP LS IP++G +F+ N FL++P ++ Sbjct: 377 KSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQPREIK 431 Query: 426 DLS 428 + S Sbjct: 432 ESS 434 >gi|186685099|ref|YP_001868295.1| type II and III secretion system protein [Nostoc punctiforme PCC 73102] gi|186467551|gb|ACC83352.1| type II and III secretion system protein [Nostoc punctiforme PCC 73102] Length = 792 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 19/215 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASF----TSGGQHLYKTVSSSTGATSVTTHD 311 L A + + L +PTL GQ+A+ G + V S AT + + Sbjct: 581 LLASLQAQVQNGNAKILTDPTLIVQEGQTANVNLTQEVVGNIKREIVRDSNLATETISAE 640 Query: 312 ---YGVVLHFT-PTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADT-T 359 G+ L + G + L + V P V G + + R ++ + Sbjct: 641 KDRVGLTLAVKVERIDDNGFVSLSVAPVVKAPQAPATINVGGGGSQQIFLVSERSLNSGS 700 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T++L+G+++D + IP+L +P++G+LFR++ + + E+ + TP ++ Sbjct: 701 IRLRDGQTLILSGIIQDSDRTTVSKIPILGDLPLIGSLFRSTNRSNQRNEVIVLLTPQIM 760 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454 + S +Y+ + + R K+ G Sbjct: 761 DDT---ENSSYGYNYTPSPEVRQILERRGLKVPGR 792 >gi|238898588|ref|YP_002924269.1| type III outer membrane secretin precursor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466347|gb|ACQ68121.1| type III outer membrane secretin precursor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 553 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 20/262 (7%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K +++ L+ + + L V I ++ ++ L Q+G +F G + + Sbjct: 293 KTLVSELDQP-KRHIELSVWIIDLDKNTLDQMGVDWK-------GGMNFKNQLGVRLNAG 344 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 L+ F + AL R ++ P + A F + + + Sbjct: 345 ------TSTLEGGQFIASVMALSRQKKANVVSRPMVLTQENIPAVFDNNRTFYSELLGEK 398 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADT 358 + YG ++ P +I + I E V +P T Sbjct: 399 N--VKLENVTYGTLVSVLPRFTENNQIEMMINIEDGNEVSQSDHETKTSLPKVGRTNIST 456 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +P G ++++ G +D IP L +P++G LF + P Sbjct: 457 IARVPKGKSLLVGGYTRDANTSENTKIPGLGSLPLIGKLFSYENKSISSIVRVFLIQPRE 516 Query: 419 VKPVAMRDLS-RPDDHYSVEDD 439 + RD S D D Sbjct: 517 INAPLNRDASDLASDIIKSSSD 538 >gi|118579256|ref|YP_900506.1| type II and III secretion system protein [Pelobacter propionicus DSM 2379] gi|118501966|gb|ABK98448.1| type II and III secretion system protein [Pelobacter propionicus DSM 2379] Length = 767 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 56/317 (17%), Positives = 114/317 (35%), Gaps = 44/317 (13%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 +V L++ + EV+ + + F S GS +GP A+ S G + Sbjct: 314 PEVLLEMKVLEVQLNDKFESAFTISTISGGSQTGPDDGQVANPLNTAASAVGSTLLGMGN 373 Query: 252 DRFSFETVL--HALERATAI-----------RTLAEPTLTAISGQSASFTSGGQHLY--- 295 + E+ L L + T+A P L A + A G + + Sbjct: 374 FALNSESTLTYQFLSSDLRLRLQLLQQNNNLTTIATPMLMAANNHPARLFIGEETVLTTG 433 Query: 296 -------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 V+++ T G L P++ + + +RI E S Sbjct: 434 FTTMTSTSTTTSGVVVNNTLPVPVTETKSVGNTLTILPSINADRSVVMRIVHENSSVKTN 493 Query: 343 VNAGDMP-----------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 + +P + K + TV G T+ + G+++ +I + +PLL I Sbjct: 494 GASIPLPVGTTVQTVSIDTVNTSKLEGTVLAQDGMTVAVGGMMRTNITDYESKVPLLGDI 553 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAF-FFNRVN 449 P LG F+ + + +TE+ + TP++++ P ++R + + + + +++ Sbjct: 554 PYLGFFFKQKQKIKTKTELVLLITPYILQAPNLGEAVTRRRLNDLSGNTGEINSYMDKLE 613 Query: 450 KIYGPKEASEVEGQNYK 466 + S + N Sbjct: 614 QERSATGTSRTDAANRH 630 >gi|45751671|emb|CAF21319.1| InvG protein [Burkholderia thailandensis] Length = 285 Score = 113 bits (282), Expect = 9e-23, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 107/284 (37%), Gaps = 22/284 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 6 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 64 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 65 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 113 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + T + YG +++ P + + Sbjct: 114 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 171 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 172 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 231 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 IP L+ +P++G LFR E+ P L++ A Sbjct: 232 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 275 >gi|45751693|emb|CAF21330.1| InvG protein [Burkholderia thailandensis ATCC 700388] Length = 282 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 107/284 (37%), Gaps = 22/284 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 6 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 64 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 65 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 113 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + T + YG +++ P + + Sbjct: 114 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 171 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 172 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 231 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 IP L+ +P++G LFR E+ P L++ A Sbjct: 232 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 275 >gi|312172187|emb|CBX80444.1| Type III secretory protein InvG [Erwinia amylovora ATCC BAA-2158] Length = 517 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 101/279 (36%), Gaps = 24/279 (8%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 V + + A + + L Q S + ++ ++IA + Q+ L + I ++ + Sbjct: 217 SARVSSDSVNIVAYSDTNSLLVMGTERQV--SFVEDLIRAIDIA-KRQIQLSLWIIDISK 273 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + + ++G Q S + S F S +F + AL ++ Sbjct: 274 EDINELGVQWSGSTKISSTGVIFGTSSLTPESS-------------INFLANVSALVKSG 320 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + + ++ P + A F + + V +S+ YG ++ P + Sbjct: 321 SAQIISRPEILTQENVPALFDNNSSFYARLVGERN--SSLEKITYGTMISVLPRLAERQH 378 Query: 328 -IGLRIQTEVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 I + + + G +P + T +P G ++++ G ++ + Sbjct: 379 EIEMILDIHDGTAPRDASGGSAHIDSLPVISNTQISTEARVPLGYSLLVGGYSRNQDEYH 438 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GIPLL IP LG LF S ++ + P L+ Sbjct: 439 DIGIPLLRDIPYLGKLFDYSYKSQTKMVRLFLIHPRLLD 477 >gi|292488059|ref|YP_003530936.1| type III secretory protein InvG [Erwinia amylovora CFBP1430] gi|292899270|ref|YP_003538639.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291199118|emb|CBJ46232.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291553483|emb|CBA20528.1| Type III secretory protein InvG [Erwinia amylovora CFBP1430] Length = 588 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 102/279 (36%), Gaps = 24/279 (8%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 V + + A + + L Q S + ++ ++IA + Q+ L + I ++ + Sbjct: 288 SARVSSDSVNIVAYSDTNSLLVMGTERQV--SFVEDLIRAIDIA-KRQIQLSLWIIDISK 344 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + + ++G Q S + S F S +F + AL ++ Sbjct: 345 EDINELGVQWSGSTKISSTGVIFGTSSLTPESS-------------INFLANVSALVKSG 391 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + + ++ P + A F + + V +S+ YG ++ P + Sbjct: 392 SAQVISRPEILTQENVPALFDNNSSFYARLVGERN--SSLEKITYGTMISVLPRLAERQH 449 Query: 328 ---IGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + L I + ++ +P + T +P G ++++ G ++ + Sbjct: 450 EIEMILDIHDGTAPRDASGDSAHIDSLPVISNTQISTEARVPLGYSLLVGGYSRNQDEYH 509 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 GIPLL IP LG LF S ++ + P L+ Sbjct: 510 DIGIPLLRDIPYLGKLFDYSYKSQTKMVRLFLIHPRLLD 548 >gi|254575124|gb|ACT68025.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii DC283] Length = 602 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 51/318 (16%), Positives = 113/318 (35%), Gaps = 31/318 (9%) Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT----IQDSQRAVELSETFLS 169 I ++ D + + + G Q + V S+T Sbjct: 262 ITVDNDTRSALEAASATQKGNFPPLPSFNAAPAARGRAVDRDIPSQQTINIVGYSDTNSL 321 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 ++ S + ++N ++I + Q+ L + I ++ +D + ++G + + Sbjct: 322 LIQGSERQVSFVEDLVNAIDIP-KQQIQLSLWIIDISKDDINELGIRWQGAAKMGNTGVT 380 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 F + S F + AL + + + ++ P + A F + Sbjct: 381 F-------------NTSSLTPESSLHFLADVSALAKKGSAQVVSRPEILTQENVPALFDN 427 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTE-----VSEPVIGV 343 K + T +S+ YG ++ P + + I + + + ++ Sbjct: 428 NSSFYAKLIGERT--SSLEKITYGTMISVLPRLAQRQQEIEMILNIQDGGLLLNADGSTE 485 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 N +P + T +P G ++++ G +D + + GIPLL IP +G LF S Sbjct: 486 NIDSLPMVNNTQISTEARVPVGYSLLVGGYSRDQDEHHRLGIPLLRDIPFVGKLFDYSYT 545 Query: 404 NREETEIFIAATPFLVKP 421 + ++ FL++P Sbjct: 546 SHKK-----MVRLFLIQP 558 >gi|268316135|ref|YP_003289854.1| type II and III secretion system protein [Rhodothermus marinus DSM 4252] gi|262333669|gb|ACY47466.1| type II and III secretion system protein [Rhodothermus marinus DSM 4252] Length = 453 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 75/215 (34%), Gaps = 21/215 (9%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 + L LE T+A P +T SG+ G +T G T Sbjct: 231 ISFRQLTNFLRFLETEGIGETVASPQITVQSGEQGRIQIGSDVPIQT-RDFAGNTITQFV 289 Query: 311 DYGVVLHFTPTVLSP-----------GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 G+++ TPT+L + L + E S ADT Sbjct: 290 STGIIIDVTPTLLVEPAADTAGAPLIEFVHLDVMVENSSATPSAAGL---IIDRNTADTQ 346 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI----LGALFRNSRFNREETEIFIAAT 415 V L G ++ GL ++GIP L +P L +F ++ ++E+ I Sbjct: 347 VLLLDGEQTIIGGLYSTRESISRKGIPFLKDLPWWFFGLRYIFGRTQRTITQSELLIVLQ 406 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450 ++ P+ R SRP + +E + R+ + Sbjct: 407 VKVLDPLTAR-ASRPLERNLLERSRRE-LMERLER 439 >gi|325282922|ref|YP_004255463.1| type II and III secretion system protein [Deinococcus proteolyticus MRP] gi|324314731|gb|ADY25846.1| type II and III secretion system protein [Deinococcus proteolyticus MRP] Length = 655 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 123/314 (39%), Gaps = 41/314 (13%) Query: 139 EMVSDTVVLHGMVRTIQDSQR-AVELSETFLSQSGRNQYANSSSKKVMNLLNI-----AG 192 + G + D+ R A + + + + +V + + Sbjct: 351 SSAGTNSTVSGTNTALGDATRLASQEATIIADPRTNSLIVRGTPTQVAQIAELIPTLDRK 410 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q+ L+V I E+ + K +G +T + + G F+ + Sbjct: 411 VPQINLQVRIQEINEEATKTLGVNWRVT--------AGGFNVGILPSGLTASFNPLQTVT 462 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQ----------------SASFTSGGQHLYK 296 F+ L+ALE + + + T++ SGQ +AS SGG+ Sbjct: 463 GFNIFPALNALESQRVAKRVYDGTVSMQSGQGSLNAGTGSQDASSTAAASIRSGGRLELN 522 Query: 297 TVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMP 349 + + G+ T YGVVL F P+V G I LR++ +++E + +G P Sbjct: 523 II-GAEGSNIEKTIPYGVVLDFFEPSVAPDGTITLRVRGQINELRNREALNAALASGGAP 581 Query: 350 S---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 S + A T + SG T++LAGL+ ++ K G+P LS+IP LGAL Sbjct: 582 SLLDFLNSDAQTKISFKSGETVLLAGLMAENNSTTKSGLPFLSQIPGLGALAGEQSTTNN 641 Query: 407 ETEIFIAATPFLVK 420 T++ T +++ Sbjct: 642 GTQMLFVITGDIIE 655 >gi|45751689|emb|CAF21328.1| InvG protein [Burkholderia thailandensis] Length = 277 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 107/284 (37%), Gaps = 22/284 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 7 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 66 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 114 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + T + YG +++ P + + Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 172 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 IP L+ +P++G LFR E+ P L++ A Sbjct: 233 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 276 >gi|85058539|ref|YP_454241.1| type III secretion apparatus InvG [Sodalis glossinidius str. 'morsitans'] gi|84779059|dbj|BAE73836.1| type III secretion apparatus InvG [Sodalis glossinidius str. 'morsitans'] Length = 586 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 93/249 (37%), Gaps = 27/249 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S + ++ ++IA + Q+ L + I ++ ++ + Q+G + + S F Sbjct: 316 SYVQDLVTAIDIA-KQQIQLSLWILDIDKEEVNQLGVDWAARANIGSGSIEF-------- 366 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + S + F + AL + +A P + A F + + Sbjct: 367 -----NSSSLSASTSYQFLAKVSALASRKDAQVVAHPEILTQENIPALFDNNSSFYVQVK 421 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIG-----VNAGDMPSYR 352 T ++ YG ++ P + S + I + + + + G + ++P Sbjct: 422 GERT--ATLEKITYGTLISVLPRLSSGSKEIEMILDIQDGGLMTGDDNAVMQVAELPLVN 479 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + T +P G ++++ G +D GIP+L IP LG LF ++ Sbjct: 480 TTQISTEARVPKGSSLLVGGYSRDQRVNAGWGIPVLRDIPFLGRLFDYRYKQTKQ----- 534 Query: 413 AATPFLVKP 421 FL++P Sbjct: 535 FVRMFLIQP 543 >gi|323186572|gb|EFZ71915.1| hypothetical protein ECOK1357_0057 [Escherichia coli 1357] Length = 367 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 23/243 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + + L + I ++ + L +G + SF FG F + LD Sbjct: 99 KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSASISTLD 149 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F + AL + ++ P + A F + V +S+ Y Sbjct: 150 GNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSLEHVTY 207 Query: 313 GVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G +++ P S G+I + + E + N +P K T +P G Sbjct: 208 GTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIARVPQG 267 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 ++++ G + IP LS IP++G +F+ N FL++P ++ Sbjct: 268 KSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN-----IVRVFLIQPREIK 322 Query: 426 DLS 428 + S Sbjct: 323 ESS 325 >gi|292487263|ref|YP_003530135.1| type III secretory protein InvG [Erwinia amylovora CFBP1430] gi|291552682|emb|CBA19727.1| Type III secretory protein InvG [Erwinia amylovora CFBP1430] Length = 589 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 112/328 (34%), Gaps = 31/328 (9%) Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADS-----NIRVEMVSDTVVLHGMVRTIQDSQR 159 G+ I ++ + L+ A+ + + + G Q Sbjct: 240 SGRNTTAAQITVDNST---QQALQAASANQDGNFRPLPIFAATSQAESGGNNDIAAIEQN 296 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQH 217 +V + + S Q + V +L++ + Q+ L + I +V +D + ++G + Sbjct: 297 SVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIPKQQIQLSLWIIDVSKDDINELGVRW 356 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + +F + S + F + AL + ++ P + Sbjct: 357 QGSAKVGNGGITF-------------NTSSLTQANSIHFLADVSALAQKGNAHVVSRPEI 403 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTE- 335 A F + K + T +S+ YG ++ P + I + + + Sbjct: 404 LTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRLDQYQHEIEMILNIQD 461 Query: 336 ----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ +P + T +P G ++++ G ++ +Q GIPLL I Sbjct: 462 GGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRNQDEQHSLGIPLLRDI 521 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P +G LF S + ++ P L+ Sbjct: 522 PYMGRLFDYSYVSHKKMVRLFLIQPRLM 549 >gi|257061946|ref|YP_003139834.1| type II and III secretion system protein [Cyanothece sp. PCC 8802] gi|256592112|gb|ACV02999.1| type II and III secretion system protein [Cyanothece sp. PCC 8802] Length = 899 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 15/181 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310 F + + A +++ + L +PTL GQ A+ + + + + V T Sbjct: 690 FLSQIEATIQSSNGKVLTDPTLVVQEGQQATVKLTQKVIENITTQVDPLSGVRTTTPVLS 749 Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQT------EVSEPVIGVNAG--DMPSYRVRKADT-TV 360 D G+ L + G I L + +V G + G + R+ + + Sbjct: 750 DAGLTLTIDIDKIDDNGFISLTVSPTIAAIGDVQPFDSGADGGFNQLFLLARRELTSGLI 809 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G T++L+G++ + Q + +P+L IP+LGALFR+ + +E+ + TP ++ Sbjct: 810 RLRDGQTLILSGIISETDQTITNKVPILGDIPLLGALFRSQTDTKNRSEVIVLLTPQILH 869 Query: 421 P 421 Sbjct: 870 D 870 >gi|292900365|ref|YP_003539734.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291200213|emb|CBJ47341.1| type III secretion system protein [Erwinia amylovora ATCC 49946] Length = 584 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 112/328 (34%), Gaps = 31/328 (9%) Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADS-----NIRVEMVSDTVVLHGMVRTIQDSQR 159 G+ I ++ + L+ A+ + + + G Q Sbjct: 235 SGRNTTAAQITVDNST---QQALQAASANQDGNFRPLPIFAATSQAESGGNNDIAAIEQN 291 Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEVRRDILKQIGFQH 217 +V + + S Q + V +L++ + Q+ L + I +V +D + ++G + Sbjct: 292 SVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIPKQQIQLSLWIIDVSKDDINELGVRW 351 Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + +F + S + F + AL + ++ P + Sbjct: 352 QGSAKVGNGGITF-------------NTSSLTQANSIHFLADVSALAQKGNAHVVSRPEI 398 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTE- 335 A F + K + T +S+ YG ++ P + I + + + Sbjct: 399 LTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRLDQYQHEIEMILNIQD 456 Query: 336 ----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 ++ +P + T +P G ++++ G ++ +Q GIPLL I Sbjct: 457 GGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRNQDEQHSLGIPLLRDI 516 Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419 P +G LF S + ++ P L+ Sbjct: 517 PYMGRLFDYSYVSHKKMVRLFLIQPRLM 544 >gi|310767456|gb|ADP12406.1| Type III secretion apparatus [Erwinia sp. Ejp617] Length = 588 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 60/346 (17%), Positives = 124/346 (35%), Gaps = 40/346 (11%) Query: 94 VGQANVI--LIGHDGK--QMLNLDILIE------RDIAHLEMT--LRRFIAD-SNIRVEM 140 G A+V+ L+ + G+ + I ++ D A L+ + F+ D SN VE Sbjct: 224 PGVASVLNKLLNNSGRLSVLRGARISVDEENQNVNDSATLKRRGDFKSFMPDFSNEEVEA 283 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + + A + + L Q S + ++ ++IA + Q+ L + Sbjct: 284 DNHG---SDTASNDSVNIVAYSDTNSLLVMGTERQV--SFVEDIIQAIDIA-KRQIQLSL 337 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 I ++ ++ + ++G Q S + F S +F + Sbjct: 338 WIIDISKEDINELGVQWSGSAKIGSTGVIFGTSSLTPESS-------------INFLADV 384 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 AL + + + ++ P + A F + K V +S+ YG ++ P Sbjct: 385 SALVESGSAQVISRPEILTQENVPALFDNNSSFYAKLVGERN--SSLEKITYGTMISVLP 442 Query: 321 TVLS-PGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGTIVLAGLL 374 + I + + + +P + T +P G ++++ G Sbjct: 443 RLAEHQQEIEMILNIHDGNVPRDASGASAHVDSLPVISNTQISTEARVPLGYSLLVGGYS 502 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++ + GIPLL IP LG +F S ++ + P L++ Sbjct: 503 RNQDEYHNIGIPLLRDIPYLGKIFDYSYTSQTKMVRLFLIHPELLE 548 >gi|197106378|ref|YP_002131755.1| hypothetical protein PHZ_c2917 [Phenylobacterium zucineum HLK1] gi|196479798|gb|ACG79326.1| hypothetical protein PHZ_c2917 [Phenylobacterium zucineum HLK1] Length = 612 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 72/234 (30%), Gaps = 9/234 (3%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 + I G + G+ ++S++ S Sbjct: 293 PRMAMVDAVILRTDDTRSATNGVNLLKNLSAYVGNGITVTRSWSTGQPATKTSVVTQNLG 352 Query: 248 KGVLDRFSFETVLH-ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 G L+ A LA+PTL A+ Q A F SG S Sbjct: 353 LGSSVGGVLSYSLNIANATEQRAEILAQPTLLALDRQPAQFFSGSNVTIALNGGPGSYGS 412 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY--RVRKADT-TVELP 363 V GV L TPT + + + ++ S ++ R T V L Sbjct: 413 VQNQPVGVSLSVTPTFVDDDSMLVSVKAVRSFFEETADSATFVQSVQTSRNMVTANVLLR 472 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T+VL+GL + ++ + PLL IP + LF + I TP Sbjct: 473 FDQTLVLSGLSEREVTSIDSRTPLLGDIPGVQHLFATKEDRDYTRSVVIMLTPR 526 >gi|218248885|ref|YP_002374256.1| type II and III secretion system protein [Cyanothece sp. PCC 8801] gi|218169363|gb|ACK68100.1| type II and III secretion system protein [Cyanothece sp. PCC 8801] Length = 743 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 15/181 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310 F + + A +++ + L +PTL GQ A+ + + + + V T Sbjct: 534 FLSQIEATIQSSNGKVLTDPTLVVQEGQQATVKLTQKVIENITTQVDPLSGVRTTTPVLS 593 Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQT------EVSEPVIGVNAG--DMPSYRVRKADT-TV 360 D G+ L + G I L + +V G + G + R+ + + Sbjct: 594 DAGLTLTIDIDKIDDNGFISLTVSPTIAAIGDVQPFDSGADGGFNQLFLLARRELTSGLI 653 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G T++L+G++ + Q + +P+L IP+LGALFR+ + +E+ + TP ++ Sbjct: 654 RLRDGQTLILSGIISETDQTITNKVPILGDIPLLGALFRSQTDTKNRSEVIVLLTPQILH 713 Query: 421 P 421 Sbjct: 714 D 714 >gi|45504747|gb|AAS66838.1| YsaC [Sodalis glossinidius] Length = 500 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 93/249 (37%), Gaps = 27/249 (10%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S + ++ ++IA + Q+ L + I ++ ++ + Q+G + + S F Sbjct: 230 SYVQDLVTAIDIA-KQQIQLSLWILDIDKEEVNQLGVDWAARANIGSGSIEF-------- 280 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + S + F + AL + +A P + A F + + Sbjct: 281 -----NSSSLSASTSYQFLAKVSALASRKDAQVVAHPEILTQENIPALFDNNSSFYVQVK 335 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIG-----VNAGDMPSYR 352 T ++ YG ++ P + S + I + + + + G + ++P Sbjct: 336 GERT--ATLEKITYGTLISVLPRLSSGSKEIEMILDIQDGGLMTGDDNAVMQVAELPLVN 393 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 + T +P G ++++ G +D GIP+L IP LG LF ++ Sbjct: 394 TTQISTEARVPKGSSLLVGGYSRDQRVNAGWGIPVLRDIPFLGRLFDYRYKQTKQ----- 448 Query: 413 AATPFLVKP 421 FL++P Sbjct: 449 FVRMFLIQP 457 >gi|45751673|emb|CAF21320.1| InvG protein [Burkholderia thailandensis] Length = 270 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 106/280 (37%), Gaps = 22/280 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 5 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 63 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 64 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTKFLASVAALSQTGD 112 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327 ++ P + A+F S K + T + YG +++ P + + Sbjct: 113 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 170 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + E + G + P + +T +P ++++ G +DD+ + Sbjct: 171 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 230 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 IP L+ +P++G LFR E+ P L++ Sbjct: 231 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLR 270 >gi|325284394|ref|YP_004256934.1| type II and III secretion system protein [Deinococcus proteolyticus MRP] gi|324316458|gb|ADY27571.1| type II and III secretion system protein [Deinococcus proteolyticus MRP] Length = 784 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 102/259 (39%), Gaps = 21/259 (8%) Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGE------DQVTLKVTIAEVRRDILKQIGFQHSI 219 T L+ N + V+ + A + V + + + +V++ K +G + Sbjct: 440 TILADDRTNSLLIVGPRGVVEEMVTAVQTIDVPVQAVRVNLKVLQVKQSDAKALGLDWKL 499 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 +F G L S E L+A RTL + TA Sbjct: 500 ----GLGGVTFGQQNGSL------SLGYTPSLTPASIEAKLNATLSNGNGRTLIDSQFTA 549 Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTE 335 +SGQ F +GG+ +++ SS+ G +V T + YG+ + P + G + L + T Sbjct: 550 LSGQETKFQNGGELVFRPQSSTVGDNTVQTPAQTYSYGLDITMRPRIAPDGTVVLVLDTT 609 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + P + D + TTV++ G T+VL G++ + GIP L +P++G Sbjct: 610 LGNPPV-RGVLDSIQQTRQALKTTVQIRPGETVVLGGVVTSSVSNSSSGIPGLRDLPVIG 668 Query: 396 ALFRNSRFNREETEIFIAA 414 LF +R + + Sbjct: 669 PLFGQQSTDRNDDALLFVL 687 >gi|91210748|ref|YP_540734.1| putative phage-related secreted protein [Escherichia coli UTI89] gi|149365806|ref|ZP_01887841.1| putative phage-related secreted protein [Yersinia pestis CA88-4125] gi|165927175|ref|ZP_02223007.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938242|ref|ZP_02226801.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. IP275] gi|165938650|ref|ZP_02227206.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. IP275] gi|167422164|ref|ZP_02313917.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167466986|ref|ZP_02331690.1| putative phage-related secreted protein [Yersinia pestis FV-1] gi|191174647|ref|ZP_03036128.1| type II/III secretion system protein [Escherichia coli F11] gi|218929372|ref|YP_002347247.1| putative phage-related secreted protein [Yersinia pestis CO92] gi|229837795|ref|ZP_04457954.1| General secretion pathway protein D [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898356|ref|ZP_04513503.1| General secretion pathway protein D [Yersinia pestis biovar Orientalis str. India 195] gi|91072322|gb|ABE07203.1| putative phage-related secreted protein [Escherichia coli UTI89] gi|115347983|emb|CAL20908.1| putative phage-related secreted protein [Yersinia pestis CO92] gi|149292219|gb|EDM42293.1| putative phage-related secreted protein [Yersinia pestis CA88-4125] gi|165913524|gb|EDR32145.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. IP275] gi|165913903|gb|EDR32521.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920843|gb|EDR38091.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. F1991016] gi|166958976|gb|EDR55997.1| putative phage-related secreted protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|190905074|gb|EDV64732.1| type II/III secretion system protein [Escherichia coli F11] gi|229688646|gb|EEO80715.1| General secretion pathway protein D [Yersinia pestis biovar Orientalis str. India 195] gi|229694161|gb|EEO84208.1| General secretion pathway protein D [Yersinia pestis biovar Orientalis str. PEXU2] Length = 414 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 54/286 (18%), Positives = 107/286 (37%), Gaps = 25/286 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 +L G V ++ AV ++ SG + Y N + ++ ++ + + T+ Sbjct: 122 ILGGYVSGSFNNSGAVISDDSLKGSSGASNYINRTGDILV---YYGTKEDIAILKTLVTS 178 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------LDRFSFET 258 + ++ + + S K +S+ + SV + S + Sbjct: 179 LDTMSDEVVVSGYVFEVQTSQSDGSGILLAAKILSDKFNISVGAAGLDNFINIRTGSIDA 238 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTTHDYGVV 315 + + L+ + ++ P L + SASF+ G TV+++T SV GV+ Sbjct: 239 IFNLLKTDSRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVL 298 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLL 374 + TP++ S + L+IQ ++S V + P+ R T V L G I+L GL Sbjct: 299 FNVTPSIKSR-TMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLA 357 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + G + F + +T+I + V Sbjct: 358 EQKDSKASSGW----------SFFGSRTSESNKTDIMVMLQVRKVD 393 >gi|259908646|ref|YP_002649002.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96] gi|224964268|emb|CAX55775.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96] gi|283478618|emb|CAY74534.1| Type III secretory protein InvG [Erwinia pyrifoliae DSM 12163] Length = 588 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 58/346 (16%), Positives = 121/346 (34%), Gaps = 40/346 (11%) Query: 94 VGQANVI--LIGHDGKQMLNLDILIERD----------IAHLEMTLRRFIAD-SNIRVEM 140 G A+V+ L+ + G+ + + I D + + F+ D SN VE Sbjct: 224 PGVASVLNKLLNNSGRLSVLRGVRISVDEENQNVNDSATSKRRGDFKSFMPDFSNEEVEA 283 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 + + A + + L Q S + ++ ++IA + Q+ L + Sbjct: 284 DNHG---SDTASNDSVNIVAYSDTNSLLVMGTERQV--SFVEDIIQAIDIA-KRQIQLSL 337 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260 I ++ ++ + ++G Q S + F S +F + Sbjct: 338 WIIDISKEDINELGVQWSGSAKIGSTGVIFGTSSLTPESS-------------INFLADV 384 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 AL + + + ++ P + A F + K V +S+ YG ++ P Sbjct: 385 SALVESGSAQVISRPEILTQENVPALFDNNSSFYAKLVGERN--SSLEKITYGTMISVLP 442 Query: 321 TVLS-PGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGTIVLAGLL 374 + I + + + +P + T +P G ++++ G Sbjct: 443 RLAEHQQEIEMILNIHDGNVPRDASGASAHVDSLPVISNTQISTEARVPLGYSLLVGGYS 502 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++ + GIPLL IP LG +F S ++ + P L++ Sbjct: 503 RNQDEYHNIGIPLLRDIPYLGKIFDYSYTSQTKMVRLFLIHPELLE 548 >gi|306813501|ref|ZP_07447691.1| putative phage-related secreted protein [Escherichia coli NC101] gi|305853246|gb|EFM53686.1| putative phage-related secreted protein [Escherichia coli NC101] Length = 414 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 54/286 (18%), Positives = 107/286 (37%), Gaps = 25/286 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 +L G V ++ AV ++ SG + Y N + ++ ++ + + T+ Sbjct: 122 ILGGYVSGSFNNSGAVISDDSLKGSSGASNYINRTGDILV---YYGTKEDIAILKTLVTS 178 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------LDRFSFET 258 + ++ + + S K +S+ + SV + S + Sbjct: 179 LDTMSDEVVVSGYVFEVQTSQSDGSGILLAAKILSDKFNISVGAAGLDNFINIRTGSIDA 238 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTTHDYGVV 315 + + L+ + ++ P L + SASF+ G TV+++T SV GV+ Sbjct: 239 IFNLLKTDSRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVL 298 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLL 374 + TP++ S + L+IQ ++S V + P+ R T V L G I+L GL Sbjct: 299 FNVTPSIKSR-TMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLA 357 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + G + F + +T+I + V Sbjct: 358 EQKDSKASSGW----------SFFGSRTSESNKTDIMVMLQVRKVD 393 >gi|241765871|ref|ZP_04763805.1| pilus (MSHA type) biogenesis protein MshL [Acidovorax delafieldii 2AN] gi|241364195|gb|EER59385.1| pilus (MSHA type) biogenesis protein MshL [Acidovorax delafieldii 2AN] Length = 599 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 43/269 (15%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQH-----------SITGSSSGPSKSFAADFGGKFVSEG 242 QV ++ + +V+ + G + G S + + GG + Sbjct: 331 KQVYVEAQLIDVQLSDNFEFGVDWTTLRSRLAAGFGSSPMQLGGSTATLPNAGGGYPGRA 390 Query: 243 GDFSVKGVLD-----------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + ++ V++AL ++ L+ P + +G A + G Sbjct: 391 ISIPAALIGSVAGPALGVSYQGSNYGIVINALRSFGNLKVLSNPNVQVRNGTPALLSVGT 450 Query: 292 QHLYKTVSSST------------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 Y + S+ST + T GV++ P V GRI L + S+ Sbjct: 451 SSRYVSQSASTQTVPGGGASTTSSSVQTDTVFSGVMVGVLPMVRDDGRIELLLNPMQSDV 510 Query: 340 ---------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 V G N +P + TT+ + G +V+ GL+ G P +S Sbjct: 511 DPASLQLVAVGGDNLVSLPKVSYKGLTTTLNVGDGDVVVVGGLIDQRTSNNDRGAPGVSD 570 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419 +P+LG LF N E+ I ++ Sbjct: 571 VPLLGKLFGNENKVHGSRELVIVLRARVL 599 >gi|315186870|gb|EFU20628.1| type II and III secretion system protein [Spirochaeta thermophila DSM 6578] Length = 696 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 100/248 (40%), Gaps = 13/248 (5%) Query: 191 AGEDQVTLKVTIAEVRRDILKQI--GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + Q+ + + + ++ S+T +S G VS G D + Sbjct: 438 RPQPQIRYDILVVQYQKSEGSDWSRNLDVSLTDTSVEQEPFSLVGSMGNLVSLGIDVVSE 497 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTG--- 303 ++F + L+ + A TLTA+SG+ SF + Y+ V TG Sbjct: 498 F---GYTFASQLNLKLEESRANIYAHTTLTALSGKDVSFQNTSTFRYRDLEVDPDTGELL 554 Query: 304 ATSVTTH-DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTV 360 +T V G +L+ V G I + I +SE + +P R T + Sbjct: 555 STGVIRELTSGFILNLGGWVSGDGMITMNISATLSERSSESSDSTSAIPPTTERVVSTFL 614 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 SG + ++GL++ ++ +P+L IP+LG LFRNS+ E+ E+ I P ++ Sbjct: 615 RTDSGKPVSISGLVQKKKTKIVNKVPVLGDIPLLGFLFRNSQEKEEDMEMVIYVVPRVMD 674 Query: 421 PVAMRDLS 428 + + Sbjct: 675 SFLLTEAP 682 >gi|126441103|ref|YP_001059995.1| Type II secretory pathway, component PulD [Burkholderia pseudomallei 668] gi|126220596|gb|ABN84102.1| type II secretory pathway, component PulD [Burkholderia pseudomallei 668] Length = 394 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 81/226 (35%), Gaps = 20/226 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV ++ + EV + FQ ++ S + GD S L Sbjct: 178 QVAVRAWVYEVSKQEDNNSAFQLALRLLGGRVGASIGSG-------TIGDDSNAIRLRAG 230 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTT 309 FE + AL + R + P L SGQ A G +S SV Sbjct: 231 GFEAAIAALNSDSRFRVVTSPNLRVRSGQLARLNVGQSVPVVGSVSYPSASGAPVQSVQY 290 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTI 368 D GV+ PTV + I L + E+S+ V + P+ RK +++ + G + Sbjct: 291 QDAGVIFQVQPTVKAS-AIDLNVIEEISDFVRTTTGVNNSPTKNTRKLESSFSVEDGDAV 349 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 ++ GL +D L G+ L + R N TEI + Sbjct: 350 LIGGLTQDKESHLDSGLSFLP------SWMRGRASNSSRTEILLLL 389 >gi|88809802|ref|ZP_01125308.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 7805] gi|88786186|gb|EAR17347.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 7805] Length = 765 Score = 110 bits (274), Expect = 8e-22, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 32/200 (16%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISG-----------------------QSASFTSGG 291 F L A ++++ + LA PTL G A + G Sbjct: 543 QFFDFLRAQIQSSSTKVLASPTLIIQEGDDESLGSDDRSISSDGKVGRSRSNEALVSVGT 602 Query: 292 QHLYKTVSSSTGATSV----TTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPV---IGV 343 + + ++ + G+ + G + + EVS + Sbjct: 603 RLVTSYRVRQDDNANIFCEPVFKNAGLTFGARVDRIDDNGFVTFSLSPEVSAETGIRVIE 662 Query: 344 NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 N G++ R+ DT + + G T+VL G+++D Q P+L IP +G FR+S Sbjct: 663 NCGNISLINSRELDTGKIRVRDGQTLVLTGVIQDSDVQAVTKWPILGDIPFIGQFFRSSG 722 Query: 403 FNREETEIFIAATPFLVKPV 422 +R + E+ I TP ++ Sbjct: 723 GSRTKRELVILVTPRIIDDT 742 >gi|124024476|ref|YP_001018783.1| general (type II) secretion pathway protein D precursor [Prochlorococcus marinus str. MIT 9303] gi|123964762|gb|ABM79518.1| possible general (type II) secretion pathway protein D precursor [Prochlorococcus marinus str. MIT 9303] Length = 849 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFET 258 + Q S G + + + + + G ++ + +F Sbjct: 578 LDATSSSDSQNQTSTSNNGQNQTSASNNSQNQTSTSTQNRGTYNRRRNPGLGYPNQAFYD 637 Query: 259 VLHALERATAIRTLAEPTLT------AISGQ-------SASFTSGGQHL--YKTVSSSTG 303 L A +T + LA PTL I+G+ A G + + ++ + G Sbjct: 638 FLRAQIESTNTKVLASPTLILSESNETIAGEIGRKNANEAYVRLGDKVVTAFEITTDQNG 697 Query: 304 AT--SVTTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKAD 357 T G+ L + G + ++ +S V + G+ + + R + Sbjct: 698 NVYCEPTFETAGLSLGAKVSKIDDNGFVTFSLEPNLSAKVGEQDQGECGLISTVNERLLE 757 Query: 358 T-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T V + G T++L G++ D Q+ P+L IP++G FR++ + ++E+ I TP Sbjct: 758 TGAVRVRDGQTLILTGVISDRDIQVVTKWPILGDIPVIGQFFRSTNGTKSKSELVIMVTP 817 Query: 417 FLVKP 421 ++ Sbjct: 818 RIIDD 822 >gi|167621192|ref|ZP_02389823.1| Type II secretory pathway, component PulD [Burkholderia thailandensis Bt4] Length = 400 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 79/228 (34%), Gaps = 20/228 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 +V ++ + EV + F + + P +GGK G RF Sbjct: 180 EVVVRGWVYEVSNINSRNSAFSIAASLFGGIP------GWGGKLSLSNGATDADPTALRF 233 Query: 255 S---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-----KTVSSSTGATS 306 S + + AL+ + R +++P + +SG+ G Q S T S Sbjct: 234 SSSMLDVAISALDADSRFRQISDPHVRVVSGERVRLNVGAQVPTLGSISYQGQSGTPVQS 293 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V D G++ P V+ + S + P+ R+ T V + G Sbjct: 294 VEYQDAGLIFDVQPVVMGDVVQVRLAEQLSSFVTTTTGVNNSPTKNTREMSTVVNMKDGE 353 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +VL GL++D + I L + F ++ TE+ + Sbjct: 354 VVVLGGLVQDQDTSSRNSIGWLP------SFFDGKSGSKGRTEVLLVL 395 >gi|225874164|ref|YP_002755623.1| hypothetical protein ACP_2600 [Acidobacterium capsulatum ATCC 51196] gi|225791968|gb|ACO32058.1| hypothetical protein ACP_2600 [Acidobacterium capsulatum ATCC 51196] Length = 612 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 14/228 (6%) Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 + E+ L + G +I G DF FV GG + G T + Sbjct: 376 VQEIISSGLAKAGDWETIIGILLAAGDISGTDFNNPFVIFGGGITETGAEWN---TTAAN 432 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---------SSSTGATSVTTHDY 312 L ++ + +L + L+ + A+F G ++ T S+ + + Sbjct: 433 MLLTSSNVISLDQVQLSVRDQKEATFLDGERYPIMTGKLSNLGNLGESTGTSPQFQYVNL 492 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G+ L TP++ + + L ++ ++S + G D+P R+ V + +G + ++ Sbjct: 493 GLTLKVTPSIQANKNVTLHMKLQLSG-LAGTTLDDIPVLTNRQYSGEVSIHAGYSALIVS 551 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + G+P LS+IP L + N + + E+ I TP +++ Sbjct: 552 SMSKQNNLDLTGMPGLSEIPDLHDM-TNRDTSSSDQELVILVTPHIIR 598 >gi|33864362|ref|NP_895922.1| general (type II) secretion pathway protein D precursor [Prochlorococcus marinus str. MIT 9313] gi|33641142|emb|CAE22272.1| possible general (type II) secretion pathway protein D precursor [Prochlorococcus marinus str. MIT 9313] Length = 774 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 24/191 (12%) Query: 255 SFETVLHALERATAIRTLAEPTLT------AISGQ-------SASFTSGGQHL--YKTVS 299 +F L A ++ + +A PTL +ISG+ A + G + + YK V Sbjct: 560 AFYDFLRAQIISSNTKVMASPTLILSESPESISGEIGRSKANEAQVSIGDKIITSYKIVQ 619 Query: 300 SSTGAT--SVTTHDYGVVL-HFTPTVLSPGRIGLRIQTEVSEPV-----IGVNAGDMPSY 351 + G + G+ L + G + ++ ++S V G GD+ + Sbjct: 620 DANGNAYCEAGFDNAGLTLGAMVSKIDDNGFVTFTLEPDLSAVVGQPISTGGKCGDVRTV 679 Query: 352 RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R+ +T V + G T++L G++ D ++ P+L IP++G FR+S +R++ E+ Sbjct: 680 NSRRLETGAVRVRDGQTLILTGVISDSDTEVVTKWPILGDIPLIGQFFRSSSGSRKKNEL 739 Query: 411 FIAATPFLVKP 421 I TP ++ Sbjct: 740 VIMVTPRIIND 750 >gi|119489367|ref|ZP_01622147.1| general secretion pathway protein D [Lyngbya sp. PCC 8106] gi|119454640|gb|EAW35786.1| general secretion pathway protein D [Lyngbya sp. PCC 8106] Length = 800 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 18/204 (8%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-------T 308 F L + + L +PTL G+ A + + + + V Sbjct: 596 FLQTLQFEIQNRNAKILTDPTLLVQEGEIARVELVENIVKRFNTDTIDNNGVQRTERQPE 655 Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------YRVRKADT-TV 360 D G+ + V G + + + V+ +N G + R+ + + Sbjct: 656 FEDVGLEVSINVERVDDNGFVTINVNPVVTAITNRINIGGVTGEDFVTETSRREYQSGRI 715 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L G T++++G++++ + IP L +PILGALFR+S E+ + TP + Sbjct: 716 RLRDGQTLIVSGIIQEQDRVTASKIPFLGDLPILGALFRSSTRETGRAEVVVLVTPMI-- 773 Query: 421 PVAMRDLSRPDDHYSVEDDAKAFF 444 + D + Y+V DA+ Sbjct: 774 -MDESDRAPFGYEYNVSPDAREML 796 >gi|237750361|ref|ZP_04580841.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229373891|gb|EEO24282.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 756 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 24/233 (10%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADFGGKFVSEGGDFSVKGVLDR 253 QV + V I + +G S P+ S FGG GG G + Sbjct: 521 QVAIDVEILSLIHFQTNNVGIDWQQIFSILNPTQSSLNIAFGG-----GGAMLTLG-NNN 574 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----------VSSSTG 303 +++ + L +R+L+ P + A++ Q A + G Y + Sbjct: 575 ADLQSIFNLLRTYGDLRSLSNPKIMALNNQPALISVGSVLRYTQNLVYQSNNTNTTIQNT 634 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDM---PSYRVRKAD 357 +T + G++L TP++ + LRI ++ +P + A + P+ + Sbjct: 635 STQYPSVFAGILLDITPSISHD-SVILRINPSITKTKDPDMENAAEALKAPPNLSTNQLS 693 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + V+L G +++ GLL + +Q + IP + + L +F E+ Sbjct: 694 SIVKLKDGERVIIGGLLNNVVQNTSQAIPKIGENKWLKNIFGKQSRTNRSEEL 746 >gi|87123518|ref|ZP_01079369.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. RS9917] gi|86169238|gb|EAQ70494.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. RS9917] Length = 771 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 32/199 (16%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISG-----------------------QSASFTSGG 291 F L A +++ + LA PTL G A G Sbjct: 549 QFFDFLRAKIESSSTKVLASPTLVLQEGGEKSMGTDKGKISEDGKIGREYSNEAYVRVGT 608 Query: 292 QHL--YKTVSSSTGATSVTTHDYGVVLHFTPT---VLSPGRIGLRIQTEVSEPVIGVNAG 346 Q + Y+ G L F + G I + E+S PV G Sbjct: 609 QFVTSYEVKQDINGNNFCQPVFANAGLTFGARVDKIDDNGFITFALSPEISAPVGSEQVG 668 Query: 347 D---MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + R DT + + G T++L G++ D +++ P+L +P +G FR+S Sbjct: 669 NCGAITIINDRSLDTGKIRVRDGQTLILTGVINDTDREVVSKWPILGDLPFVGQFFRSSG 728 Query: 403 FNREETEIFIAATPFLVKP 421 R ++E+ I TP ++ Sbjct: 729 GQRSKSELVILVTPRIIDD 747 >gi|222100907|ref|YP_002535475.1| Secretin/TonB, short N-terminal domain precursor [Thermotoga neapolitana DSM 4359] gi|221573297|gb|ACM24109.1| Secretin/TonB, short N-terminal domain precursor [Thermotoga neapolitana DSM 4359] Length = 380 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 94/232 (40%), Gaps = 13/232 (5%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + +N +++ E+++ L+V + EV + L++ G + S G ++F + K + Sbjct: 153 ETLNTIDVP-EEELILEVKVVEVNEETLRKWGISWQYSNQSEG--ENFTINLLEKALDIV 209 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + VL + + LA P L SG S F++ Q Y T + Sbjct: 210 FNTLDYSVLSHIELSI------GDGSAKLLANPRLRLQSGSSGKFSAKTQRNYITTENDK 263 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 V + + G + P +L + L ++ S + +P + + TV L Sbjct: 264 KV--VKSVELGTEVEIKPFLLRDNTVSLTVKITSSNALDKNEG--LPDTTSQSIEGTVRL 319 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 G T+ + G+ D + + +PLL IP+ G LF+ + EI I Sbjct: 320 KLGETVAIGGIGFDTYTTVTDKVPLLGDIPVFGYLFKKETERKIHKEILILV 371 >gi|284009077|emb|CBA76056.1| general secretion pathway protein D [Arsenophonus nasoniae] Length = 221 Score = 107 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 5/194 (2%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV ++ + E F S+ G S GG F G+ Sbjct: 33 RTQVLIESIMFETTDGSNFNFSFGVGKKSGSTVVGGVNTTTLGDILSSSGGSF---GIFS 89 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 L A++ + L+ P + +SGQ+ +G + + V ++ D Sbjct: 90 GNVLGLALTAVQGDKHSKLLSVPRILTLSGQNVPIVTGK-IIGQGVDVKNPFQTIERRDV 148 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G+ L TP VL+ + L ++++ NA D+ + R DTTV+L +G T+++ G Sbjct: 149 GISLDVTPVVLNGDSVMLTVKSKADSVSNISNATDI-VFNQRSIDTTVQLKNGDTLLIGG 207 Query: 373 LLKDDIQQLKEGIP 386 L++ + +P Sbjct: 208 LIQHNAVNSTSSVP 221 >gi|167575154|ref|ZP_02368028.1| putative bacteriophage-related lipoprotein [Burkholderia oklahomensis C6786] Length = 446 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 58/324 (17%), Positives = 122/324 (37%), Gaps = 22/324 (6%) Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 D + + ++ + R +LR + + I + V+ + + Sbjct: 126 DSRARADQEVFVYRPRYRSAESLRSLV-EPVIGSRSMMPMSVIAATPPAVTSPVQVPGAP 184 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV-TLKVTIAEVRRD----ILKQIGFQHSI 219 + S A + L+ + D+V L+ + E+ +++ ++ + Sbjct: 185 ISTASDIAAAPVAVGVQARGNELVIVGSHDEVAMLRKLVPELDTAPGEVVVRGWVYEVAN 244 Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRTLAEPT 276 TGS++ G+ GD + RF+ + + AL + + ++ P Sbjct: 245 TGSANSAWSIAVRLLSGQLRLSSGDTASDTSAMRFTGPGVDAAISALNADSRFKVVSSPH 304 Query: 277 LTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + +SG+ G Q ++ S+ T S+T D G++ PTV+ I L+ Sbjct: 305 VRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQDAGLIFDVEPTVMRD-VIELK 363 Query: 332 IQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ E+S+ V D P+ R+ T L G +VL GL++D + G L Sbjct: 364 VREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDATARSGYSWLP- 422 Query: 391 IPILGALFRNSRFNREETEIFIAA 414 + F +++ TE+ + Sbjct: 423 -----SFFDGRSSSKQRTEVLLVL 441 >gi|153827975|ref|ZP_01980642.1| VcsC2 [Vibrio cholerae 623-39] gi|148876556|gb|EDL74691.1| VcsC2 [Vibrio cholerae 623-39] Length = 467 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 62/291 (21%), Positives = 102/291 (35%), Gaps = 16/291 (5%) Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN- 186 + + + + G + I D + + LS+ R + Sbjct: 169 QATFPGAQSLIASAITNI---GQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQA 225 Query: 187 ------LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 LL D+V L IA + +Q+ F + S+ + F D S Sbjct: 226 LPGSNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGS 285 Query: 241 EG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G D V + F HAL R + E L + Q F G + Sbjct: 286 RGIYDLVVPPFTETTDFLRNFHALTSNGIARGVYETNLLVLENQQGHF--GKKQTATIAL 343 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKA 356 S + L+ T +L G + RIQ + + N+ P + Sbjct: 344 ISNRQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDKESDNSNRPPKVSSQSL 403 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 ++ V + G TI+L G QQ+K GIP+LS IP+LG LF+++ + + Sbjct: 404 NSEVYIKPGQTIILGGFDNTVTQQMKSGIPVLSSIPLLGELFKSTSEVKSK 454 >gi|330890298|gb|EGH22959.1| general secretion pathway protein D [Pseudomonas syringae pv. mori str. 301020] Length = 356 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 76/225 (33%), Gaps = 28/225 (12%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 +A + T L + Y N ++V++ L+ QV ++ I EV D Q G Q Sbjct: 135 QADATTNTLLISAPEPLYRN--LREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 191 Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261 + G + G G ++ G+ + + + Sbjct: 192 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 251 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYG 313 AL+ L+ P L + ++AS G + T S TG +V + G Sbjct: 252 ALKSKGGSNVLSTPNLLTLDNEAASIFFGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 311 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358 + L+ P + G + L I EVS + R DT Sbjct: 312 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDT 356 >gi|153212013|ref|ZP_01947830.1| VcsC2 [Vibrio cholerae 1587] gi|124116809|gb|EAY35629.1| VcsC2 [Vibrio cholerae 1587] Length = 461 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 61/291 (20%), Positives = 101/291 (34%), Gaps = 16/291 (5%) Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN- 186 + + + + G + I D + + LS+ R + Sbjct: 163 QATFPGAQSLIASAITNI---GQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQA 219 Query: 187 ------LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 LL D+V L IA + +Q+ F + S+ + F D S Sbjct: 220 LPGSNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGS 279 Query: 241 EG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G D V + F AL R + E L + Q F G + Sbjct: 280 RGIYDLVVPPFTETTDFLRNFQALTSNGIARGVYETNLLVLENQQGHF--GKKQTATIAL 337 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKA 356 S + L+ T +L G + RIQ + + N+ P + Sbjct: 338 ISNRQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDKESDNSNRPPKVSSQSL 397 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 ++ V + G TI+L G QQ+K GIP+LS IP+LG LF+++ + + Sbjct: 398 NSEVYIKPGQTIILGGFDNTVTQQMKSGIPVLSSIPLLGELFKSTSEVKSK 448 >gi|134093313|ref|YP_001098388.1| putative secretion pathway protein [Herminiimonas arsenicoxydans] gi|133737216|emb|CAL60259.1| putative bacterial secretion pathway protein [Herminiimonas arsenicoxydans] Length = 656 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 7/216 (3%) Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 ++L + Q +++ + G + + S+ + A ++ Sbjct: 360 NLLSALTLQLGSGSTAAYSRIVTSNSLNGAKPDVSTAITRAVSIPALSYSLNI-ANANSS 418 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-GATSVTTHD--YGVVLHFTPTVLS 324 LA PTL AI G + F SG VS+S G T++ D +G+ L TPT L Sbjct: 419 VNEVLARPTLAAIEGLPSEFFSGTNLSAGLVSTSQQGGTTIVPLDKRFGIKLSVTPTFLP 478 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 GR+ L+I+ + + + A+ V + G T++L+GL + Sbjct: 479 QGRVQLKIEAQRTALNASSETSRVAYQIEIGELTANANVVMNLGETLLLSGLSEKTRTST 538 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 ++G+P L +P++ LF N + N + I TP Sbjct: 539 RDGVPGLQDVPVVQYLFSNKKTNDLQRSALILITPR 574 >gi|301019450|ref|ZP_07183622.1| bacterial type II and III secretion system protein [Escherichia coli MS 196-1] gi|299882211|gb|EFI90422.1| bacterial type II and III secretion system protein [Escherichia coli MS 196-1] Length = 358 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 54/286 (18%), Positives = 108/286 (37%), Gaps = 25/286 (8%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 +L G V ++ AV ++ SG + Y N + ++ ++ + + T+ Sbjct: 66 ILGGYVSGSFNNSGAVISDDSLKGSSGASNYINRTGDILV---YYGTKEDIAILKTLVTS 122 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------LDRFSFET 258 + ++ + + S K +S+ + SV + S + Sbjct: 123 LDTMSDEVVVSGYVFEVQTSQSDGSGILLAAKILSDKFNISVGAAGLDNFINIRTGSIDA 182 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTTHDYGVV 315 + + L+ + ++ P L + SASF+ G TV+++T SV GV+ Sbjct: 183 IFNLLKTDSRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVL 242 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLL 374 + TP++ S + L+IQ ++S V + P+ R T V L G I+L GL Sbjct: 243 FNVTPSIKSR-TMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLA 301 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + G ++F + +T+I + V Sbjct: 302 EQKDSKASSGW----------SVFGSRTSESNKTDIMVMLQVRKVD 337 >gi|330959534|gb|EGH59794.1| putative type II and type III secretion system pilus protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 550 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 107/294 (36%), Gaps = 19/294 (6%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 ++ G+ + + + + +G + + V ++V +V Sbjct: 254 MIGGLGNSEEAPAYIEGIRSVGIVTAGGKPSKMKVLDRYLKRAIEESTKVVNVQVEAYDV 313 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGV--LDRFSFETVLHA 262 KQ G ++ +S+ +F + F +VKG + + ++ Sbjct: 314 LLTDGKQKGIDWNLLVNSTVSGNPLGLNFFNTSPTSDDPFWNVKGTYSSSKVTASALVKF 373 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATSVTTH----DYGV 314 LE+ + +P +T +G A +G + Y +G +VT GV Sbjct: 374 LEQYGRVELKDQPNITVRNGVPAQIYAGEELTYIVDVEQSQDESGNVTVTPKLGRLKVGV 433 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 L T VL ++ + + +S IG + + P +++ T + SG ++ Sbjct: 434 TLSVTVRVLDNDQLLVDVWPVISNLNDPDTINIGDYSFNTPRVNLKEFSTQLITSSGQSV 493 Query: 369 VLAGLLKDDIQQLKEGIPL--LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L GL+ + + +P L IL L + + E E+ + TP LV+ Sbjct: 494 HLGGLITKRMNEAMRQLPWQNLVTKAILNPLTQGINNSLERRELVLVVTPTLVQ 547 >gi|157159048|ref|YP_001462784.1| type II/III secretion system protein [Escherichia coli E24377A] gi|157081078|gb|ABV20786.1| type II/III secretion system protein [Escherichia coli E24377A] Length = 406 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 91/267 (34%), Gaps = 15/267 (5%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 + + +AV F+S SG ++++V L+ + V EV Sbjct: 146 ANGEQTWQAVSSGTRFISASGDVFVFRGTAREV-ELVRQLLPQ---IDVRAQEVSVAGYV 201 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 GS + + +S L S + + + + Sbjct: 202 FEVQTSERNGSGLALAAELLSGRFSITMSSASGLDNFIRLSTGSVDAMYELFRTDSRFQV 261 Query: 272 LAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328 ++ P L ISG+ A F+ G + SV G + PTV I Sbjct: 262 VSSPRLRVISGKEAVFSVGSDVPVLSSVSWQDKVPVQSVEYRSSGAIFRVKPTVTQD-VI 320 Query: 329 GLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 GL I ++S + P+ R+ T+V L G IVL GL ++ + + G+ Sbjct: 321 GLDIVQQLSNFAKTDTGVNNTPTLIKREVSTSVSLNDGDIIVLGGLAENKTSKARTGLSF 380 Query: 388 LSKIPILGALFRNSRFNREETEIFIAA 414 L + F + R +T+I + Sbjct: 381 LPDV------FGSDSDERAKTDIIVVL 401 >gi|317968183|ref|ZP_07969573.1| general (type II) secretion pathway protein D precursor [Synechococcus sp. CB0205] Length = 729 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 65/379 (17%), Positives = 121/379 (31%), Gaps = 104/379 (27%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG-------------- 192 + G +T Q + + +ET+ + +G + ++ + + + G Sbjct: 327 VAGGEQTQQTKKEEITTTETYGASTGPLRGLIGTTDSRLRTITLVGDSQLVSVAENYLRQ 386 Query: 193 ----EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---FAADFGGKFVSEGGDF 245 + QV L V I +V + + + S+ F FGG +G F Sbjct: 387 IDLRQRQVALSVKILDVTLNNDTSLSNSFAFRSGSNFVVSDRGEFLGAFGGLLPPQGDQF 446 Query: 246 SV------------------------------------------KGVLDRFSFETVLHAL 263 S G + +++ + L Sbjct: 447 STIAGGAASAKSETVTATGQQATVATSEIPANSPAPINPGFAYPSGSANNYNYFDFVRGL 506 Query: 264 ERATAIRTLAEPTLTAISGQS-----ASFTSGGQ-------------------------- 292 + + LA PTL A+ T GG Sbjct: 507 IESNTTKVLASPTLIINENSEPIASGAAVTVGGSGTAALNTASIGRPFANESFVTVGAQE 566 Query: 293 -HLYKTVSSSTGATSVTTHDYGV-VLHF---TPTVLSPGRIGLRIQTEVSEPVIG----V 343 Y + GA + ++G L F + G + + E+S + Sbjct: 567 IVSYTVQAGQNGAPNSCQPEFGTAGLTFGARVSRIDDNGFVTFSMSPEISAVIATDVRIE 626 Query: 344 NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 G + + R+ DT V + G T++L G++ D Q + P+L IP +G FR+S Sbjct: 627 GCGTVNTLTTRRLDTGEVRVRDGQTLILTGVISDYDQAVVRKWPVLGDIPFVGQFFRDSI 686 Query: 403 FNREETEIFIAATPFLVKP 421 RE+ E+ I +P +++ Sbjct: 687 NRREKRELVILVSPRIIRD 705 >gi|160875361|ref|YP_001554677.1| YscC/HrcC family type III secretion outer membrane protein [Shewanella baltica OS195] gi|160860883|gb|ABX49417.1| type III secretion outer membrane pore, YscC/HrcC family [Shewanella baltica OS195] gi|315267560|gb|ADT94413.1| type III secretion outer membrane pore, YscC/HrcC family [Shewanella baltica OS678] Length = 491 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 96/263 (36%), Gaps = 31/263 (11%) Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192 V + G+V +++ + +++ ++ N + + G Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259 Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 + + V+I +V KQ+G S + G S SF + + D Sbjct: 260 RQLDTKPSMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + +F L+ALE+ + + L+ P++ ++ A + T Sbjct: 313 STVIGNTGNFMMRLNALEKNSKAKVLSRPSVVTLNNVQAVLD--KNVTFYTKLEGDKVAK 370 Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVEL 362 + + G +L TP ++ + L + + + V+ + +P + + T L Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430 Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385 SG +++L G ++D + + I Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453 >gi|32471490|ref|NP_864483.1| general secretory pathway protein D [Rhodopirellula baltica SH 1] gi|32443331|emb|CAD72164.1| similar to general secretory pathway protein D [Rhodopirellula baltica SH 1] Length = 1161 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 61/313 (19%), Positives = 97/313 (30%), Gaps = 78/313 (24%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------SITGSSSGPSKSFAAD 233 ++ L Q+T++V + +QIG + G SGP + D Sbjct: 831 DLLESLRRLQNLQITIEVRFITLSDTFFEQIGIDFDLQFDDNAPGLPGDDSGPEITIGLD 890 Query: 234 FGGKFVSE-------------------GGDFSVKGVLDRFSFET--VLHALERATAIRTL 272 G ++ G S G E L A + + + Sbjct: 891 GDGTPTADLDIRLDQNSGATVPFGAPDAGAISTLGFAILSDIEAYFFLQAAQGDSRTNVM 950 Query: 273 AEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTHDY------GVVLHFTPTVLSP 325 P +T GQ AS + T + G +V G L+ V Sbjct: 951 QAPKVTLFDGQIASIQDQTSRPFVTSIVPVVGDFAVAQQPVIVVLDEGTRLNVQGVVSED 1010 Query: 326 GR-IGLRIQTEVSEP----------------------------------------VIGVN 344 R + L + S+ V Sbjct: 1011 KRFVRLTLIPTFSQIGEVNEFTFQGNSTTRNTSNRNVDTNGDGVIDEEDEQEEESVTQGT 1070 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P++ +TTV +P GGTI+L G+ + + + G+P LSKIP + LFRN+ Sbjct: 1071 TVQQPTFAFTTVNTTVSVPDGGTILLGGIKRMSEGRNERGVPFLSKIPYVSRLFRNTAVG 1130 Query: 405 REETEIFIAATPF 417 RE + + TP Sbjct: 1131 RESRSLMMMVTPR 1143 >gi|318605712|emb|CBY27210.1| putative phage-related secreted protein [Yersinia enterocolitica subsp. palearctica Y11] Length = 420 Score = 106 bits (265), Expect = 8e-21, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 83/234 (35%), Gaps = 19/234 (8%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 ++V + + EV+ GS + + + G F Sbjct: 186 TASEEVIVAAYVFEVQTSER---------NGSGLALAAKLLSGKLNIQIGASGGFDNFIR 236 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATSV 307 ++ S + + + ++ P L G SA+F+ G + + + + S+ Sbjct: 237 VNTGSLDALYELFRTDSRFHVVSSPRLRVKDGASATFSVGNEVPVLGQVSYADNRPIQSI 296 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGG 366 GV+L P + + I L I+ ++S + P+ R+ +T V G Sbjct: 297 EYRSSGVILDVKPQIRTDN-IDLVIKQQLSSFAKTDTGVNNSPTLIKREVNTEVSAADGD 355 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 I+L GL + + G L K G L +S + +T+I + V+ Sbjct: 356 IILLGGLAESKVTNADTGFSFLPK----GWL-TSSSDEKNKTDILVVLQAKKVR 404 >gi|149925492|ref|ZP_01913756.1| Type II secretory pathway component PulD-like protein [Limnobacter sp. MED105] gi|149825609|gb|EDM84817.1| Type II secretory pathway component PulD-like protein [Limnobacter sp. MED105] Length = 633 Score = 106 bits (265), Expect = 8e-21, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 95/242 (39%), Gaps = 15/242 (6%) Query: 191 AGEDQVTLKVTIAEVRR--DILKQIGFQHSITGSSSGPSKSFAA--DFGGKFVSEGGDFS 246 G + + V + + K + +++T + + AA V+ GG Sbjct: 310 GGPRMLLIDVILLSTQELISTSKGVNLLNALTLQLGNVAGNVAAYSRVNNSTVTNGGPAD 369 Query: 247 VKGVLDRFSFETVLH-----ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 V + R L A ++ LA PTL AI G + F SG VS+S Sbjct: 370 VSTAITRAVTIPALSYSLNIANANSSLNEVLARPTLAAIEGLPSEFFSGTNLSAGFVSTS 429 Query: 302 T-GATSVTT--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRK 355 G T+V G+ L TP L GRI L+++ + + + Sbjct: 430 VQGGTTVVPLEKRIGIKLAVTPVFLPQGRIQLKVEAQRTNLNATTENPRVAYQIEIGETT 489 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 A+ V + G T+VL+GL + ++G+P L +P L LF N R N + + I T Sbjct: 490 ANANVVMNLGDTLVLSGLSEKSSASNRDGVPGLQDVPGLQYLFSNKRTNDLQRSVLILVT 549 Query: 416 PF 417 P Sbjct: 550 PR 551 >gi|304408552|ref|ZP_07390173.1| type III secretion outer membrane pore, YscC/HrcC family [Shewanella baltica OS183] gi|307305380|ref|ZP_07585128.1| type III secretion outer membrane pore, YscC/HrcC family [Shewanella baltica BA175] gi|304352373|gb|EFM16770.1| type III secretion outer membrane pore, YscC/HrcC family [Shewanella baltica OS183] gi|306911683|gb|EFN42108.1| type III secretion outer membrane pore, YscC/HrcC family [Shewanella baltica BA175] Length = 491 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 96/263 (36%), Gaps = 31/263 (11%) Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192 V + G+V +++ + +++ ++ N + + G Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259 Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 + + V+I +V KQ+G S + G S SF + + D Sbjct: 260 RQLDTKPTMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + +F L+ALE+ + + L+ P++ ++ A + T Sbjct: 313 STVIGNTGNFMLRLNALEKNSKAKVLSRPSVVTLNNVQAVLD--KNVTFYTKLEGDKVAK 370 Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVEL 362 + + G +L TP ++ + L + + + V+ + +P + + T L Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430 Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385 SG +++L G ++D + + I Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453 >gi|253771851|ref|YP_003034682.1| type II and III secretion system protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|242378852|emb|CAQ33644.1| gspD [Escherichia coli BL21(DE3)] gi|253322895|gb|ACT27497.1| type II and III secretion system protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253979310|gb|ACT44980.1| general secretory pathway component, cryptic [Escherichia coli BL21(DE3)] Length = 338 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%) Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391 I EVS N+ P++ R V + +G T+VL GLL D ++ +PLL I Sbjct: 195 IHLEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDI 254 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 P++G LFR + R + + + P +++ + + + + + + + Sbjct: 255 PLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKSKAL 314 Query: 452 YGPKEASEVEGQNYK 466 G ++ ++ + Sbjct: 315 VGSEDLPVLDENTFN 329 >gi|53720957|ref|YP_109943.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei K96243] gi|52211371|emb|CAH37360.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei K96243] Length = 458 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 16/215 (7%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALER 265 +++ ++ + T S++ G+ GD S RF+ + + AL Sbjct: 246 VVRGWVYEVANTDSANSAWSIAVRLLSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNA 305 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTP 320 + + ++ P + +SG+ G Q ++ SS T S+T D G++ P Sbjct: 306 DSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEP 365 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 TV+ I L+++ E+S+ V D P+ R+ T L G +VL GL++D Sbjct: 366 TVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDA 424 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + G L + F +++ TE+ + Sbjct: 425 TARSGYSWLP------SFFDGRSSSKQRTEVLLVL 453 >gi|153829308|ref|ZP_01981975.1| msha biogenesis protein mshl [Vibrio cholerae 623-39] gi|148875208|gb|EDL73343.1| msha biogenesis protein mshl [Vibrio cholerae 623-39] Length = 137 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%) Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---------DMPSYRVRKADTTVELPSGG 366 + TP + G + L + V E + +R++D+ + G Sbjct: 1 MDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGD 60 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +V+ GL+K + +P L +P LG LFRN+ ++TE+ I P +V Sbjct: 61 VVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 113 >gi|126174170|ref|YP_001050319.1| YscC/HrcC family type III secretion outer membrane protein [Shewanella baltica OS155] gi|125997375|gb|ABN61450.1| type III secretion outer membrane pore, YscC/HrcC family [Shewanella baltica OS155] Length = 491 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 96/263 (36%), Gaps = 31/263 (11%) Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192 V + G+V +++ + +++ ++ N + + G Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259 Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 + + V+I +V KQ+G S + G S SF + + D Sbjct: 260 RQLDTKPTMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312 Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 + + +F L+ALE+ + + L+ P++ ++ A + T Sbjct: 313 STVIGNTGNFMLRLNALEKNSKAKVLSRPSVVTLNNVQAVLD--KNVTFYTKLEGDKVAK 370 Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVEL 362 + + G +L TP ++ + L + + + V+ + +P + + T L Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430 Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385 SG +++L G ++D + + I Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453 >gi|134283528|ref|ZP_01770228.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei 305] gi|134245277|gb|EBA45371.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei 305] Length = 447 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 16/215 (7%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALER 265 +++ ++ + T S++ G+ GD S RF+ + + AL Sbjct: 235 VVRGWVYEVANTDSANSAWSIAVRLLSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNA 294 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTP 320 + + ++ P + +SG+ G Q ++ SS T S+T D G++ P Sbjct: 295 DSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEP 354 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 TV+ I L+++ E+S+ V D P+ R+ T L G +VL GL++D Sbjct: 355 TVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDA 413 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + G L + F +++ TE+ + Sbjct: 414 TARSGYSWLP------SFFDGRSSSKQRTEVLLVL 442 >gi|167838357|ref|ZP_02465216.1| putative bacteriophage-related lipoprotein [Burkholderia thailandensis MSMB43] Length = 420 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 24/260 (9%) Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 V+ L G + K V +L GE V ++ + EV SI Sbjct: 174 VQARGNELVIVGSHDEVAMLRKLVPDLDTAPGE--VVVRGWVYEVANTDSANSA--WSIA 229 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 ++ G S+ G + + AL + + ++ P + + Sbjct: 230 VRLLSGQLRLSS---GDTSSDASAMRFTG----PGVDAAISALNADSRFKVVSSPHVRIV 282 Query: 281 SGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 SG+ G Q ++ SS T S+T D G++ PTV+ I L+++ E Sbjct: 283 SGEHVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMRD-VIELKVREE 341 Query: 336 VSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 +S+ V D P+ R+ T L G +VL GL++D + G L Sbjct: 342 ISDFVATKTGVDTSPTKNTRQLQTVTRLRDGELVVLGGLIQDRDATARSGYSWLP----- 396 Query: 395 GALFRNSRFNREETEIFIAA 414 + F +++ TE+ + Sbjct: 397 -SFFDGRSSSKQRTEVLLVL 415 >gi|171317904|ref|ZP_02907080.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] gi|171096911|gb|EDT41783.1| type II and III secretion system protein [Burkholderia ambifaria MEX-5] Length = 460 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 91/257 (35%), Gaps = 25/257 (9%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 A + +L+ + D+V L + ++ + ++ S + A Sbjct: 208 QPVAGGVQARGSDLVIVGSRDEVALLRKVVPELDTAPGEVVVRGWAYEVTNTDSANSAWS 267 Query: 234 FGGKFVSEGGDFSVKGV----------LDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 K + GG + + + AL + + ++ P + SG+ Sbjct: 268 IAAKVL--GGQLRISSGDTSSDSSAVRFTGPGIDAAISALNADSRFKVISSPHVRIASGE 325 Query: 284 SASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 G Q ++ SS T S+T D G++ PTV+ I LR+ E+S+ Sbjct: 326 KVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMRD-AIELRVHEEISD 384 Query: 339 PVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 V D P+ R+ T L G +VL GL++D + G L + Sbjct: 385 FVATKTGVDTSPTKNTRQLQTVTRLKDGEVVVLGGLIQDRNATARSGYAWLP------SF 438 Query: 398 FRNSRFNREETEIFIAA 414 +++ TE+ + Sbjct: 439 LDGRSSSKQRTEVLLVL 455 >gi|146343920|ref|YP_001201776.1| putative type II and type III secretion system pilus protein [Pseudomonas fluorescens SBW25] gi|146187732|emb|CAM96060.1| putative type II and type III secretion system pilus protein [Pseudomonas fluorescens SBW25] Length = 550 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 106/294 (36%), Gaps = 19/294 (6%) Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 ++ G+ + + + + +G + + V ++V +V Sbjct: 254 MIGGLGDSEEAPAYIEGIRSVGIVTAGGKPSKMKVLDRYLKRAIEESTKVVNVQVEAYDV 313 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGV--LDRFSFETVLHA 262 KQ G ++ +S+ +F F +V+G + + ++ Sbjct: 314 LLTDGKQKGIDWNLLVNSTVSGNPLGLNFFNTSPKSDDPFWNVQGTYTSSKVTASALVKF 373 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATSVTTH----DYGV 314 LE+ + +P +T +G A +G + Y +G +VT GV Sbjct: 374 LEQYGRVELKDQPNITVRNGVPAQIYAGEELTYIVDVEQSQDESGNVTVTPKLGRLKVGV 433 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTI 368 L T VL ++ + + +S IG + + P +++ T + SG ++ Sbjct: 434 TLSVTVRVLDNDQLLVDVWPVISNLNDPDTINIGDYSFNTPRVNLKEFSTQLITSSGQSV 493 Query: 369 VLAGLLKDDIQQLKEGIPL--LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L GL+ + + +P L IL L + + E E+ + TP LV+ Sbjct: 494 HLGGLITKRMNEAMRQLPWQNLVTKAILNPLTQGINNSLERRELVLVVTPTLVQ 547 >gi|153951393|ref|YP_001397557.1| type II and III secretion system protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938839|gb|ABS43580.1| bacterial type II and III secretion system protein [Campylobacter jejuni subsp. doylei 269.97] Length = 391 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 105/266 (39%), Gaps = 16/266 (6%) Query: 160 AVELSETFLSQSGR-----NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 +++ T+L +S + + S K ++ L+ Q+ K+TI E D LK+ G Sbjct: 128 MYDINSTYLYRSNAVTFLCDDFIYSHIKSSIDDLDNMDLPQLKFKITILETNLDFLKEKG 187 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 + S P K F + ++ D+ F + L+ LE R ++ Sbjct: 188 SKLSSLFQ-GNPIKDFHLFVNLITIPYNSQNNIVSS-DKKGFYSTLNFLENQRITRIVSN 245 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRI 328 P L A S F+S + S+S + TS D G+ + P ++ ++ Sbjct: 246 PFLLARSNTEVFFSSVQNIPFLKNSTSVSDTRVSQNTSYDYRDVGLQVTLKPVIIGD-KV 304 Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + V + + N+ P ++ ++ L G +VL+G+ K GIP L Sbjct: 305 DFSLHLIVEDLLS--NSNLTPVTSKKELKSSYTLKKGELLVLSGINKVTNTNYTSGIPYL 362 Query: 389 SKIPILGALFRNSRFNREETEIFIAA 414 I LG LF+ R + + ++ Sbjct: 363 KDIWFLGNLFKIQRKETNNSVLTLSI 388 >gi|170077129|ref|YP_001733767.1| general secretion pathway protein D [Synechococcus sp. PCC 7002] gi|169884798|gb|ACA98511.1| general secretion pathway protein D [Synechococcus sp. PCC 7002] Length = 788 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 24/206 (11%) Query: 241 EGGDFSVKGVLDRFSFETVLHA-LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 EG V +F L A L R T + +A+PTL ++ Q + Sbjct: 556 EGIGTIVPSTTSGTNFIGSLVAGLLRNTTSKIVADPTLIIQENETGELRVTEQIINSVQI 615 Query: 300 SSTGATSVTTHDYGVVLHFTP----------------TVLSPGRIGLRIQTEVSEPVIGV 343 S S + + ++ P + G I L I EVS P V Sbjct: 616 VSGSVNSDSDNGTNNAVNVLPEPVLAEVGLFVPITVENIDDNGFITLNITPEVSAPSEEV 675 Query: 344 -----NAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + ++ + + + +V L T++LAG + + +P+L IPILG+ Sbjct: 676 VFEAGTSRNVLTLKRQSILNSGSVRLRDDQTLILAGAIDERDITTTSKVPILGDIPILGS 735 Query: 397 LFRNSRFNREETEIFIAATPFLVKPV 422 LFR+S E E+ TP ++ Sbjct: 736 LFRSSSRTNERRELLFIITPQVIDDS 761 >gi|91775810|ref|YP_545566.1| type II and III secretion system protein [Methylobacillus flagellatus KT] gi|91709797|gb|ABE49725.1| type II and III secretion system protein [Methylobacillus flagellatus KT] Length = 395 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 21/228 (9%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 ++V +K I EV + + S G + G S + Sbjct: 178 RPANEVVVKAYIYEVTNTVRDLNAIS---------AAVSLLNSRLGITIENGATQSNQLK 228 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TS 306 L + + ++ A + + ++ P+L +G+++ F+ G + ++ T S Sbjct: 229 LSLPNIDVLISAFDSDNRFKQVSAPSLRVKNGKNSRFSVGTETPTIASTTQTNNGNPVQS 288 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSG 365 + GV+L TP +L+ I L I ++S P+ R+ T V G Sbjct: 289 IIYRPSGVILEITPKILAE-TIELDITQQISSFQPTTTGVNQSPTLLKREIKTVVNTRDG 347 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 I+L GL + + + ++G+ L LF + + E+++I + Sbjct: 348 ELILLGGLNESRLSKQRQGLSFLP------RLFNANTDSDEKSDILLV 389 >gi|83720458|ref|YP_443762.1| phage-related secreted protein [Burkholderia thailandensis E264] gi|83654283|gb|ABC38346.1| probable phage-related secreted protein YPO2280 [Burkholderia thailandensis E264] Length = 460 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 16/215 (7%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALER 265 +++ ++ + T S++ A GG+ GD S RF+ + + AL Sbjct: 248 VVRGWAYEVTNTDSTNSAWSIAAKVLGGQLRISSGDTSSDKSAVRFTGPGIDAAISALNA 307 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTP 320 + + ++ P + SG+ G Q ++ SS T S+T D G++ P Sbjct: 308 DSRFKVISSPHVRIASGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEP 367 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 TV+ I LR+ E+S+ V D P+ R+ T L G +VL GL++D Sbjct: 368 TVMRD-AIELRVHEEISDFVPTKTGVDTSPTKNTRQLQTVTRLTDGEVVVLGGLIQDRNS 426 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + G L + +++ TE+ + Sbjct: 427 TARSGYAWLP------SFLDGRSSSKQRTEVLLVL 455 >gi|304412101|ref|ZP_07393711.1| type II and III secretion system protein [Shewanella baltica OS183] gi|307305996|ref|ZP_07585742.1| type II and III secretion system protein [Shewanella baltica BA175] gi|304349651|gb|EFM14059.1| type II and III secretion system protein [Shewanella baltica OS183] gi|306911489|gb|EFN41915.1| type II and III secretion system protein [Shewanella baltica BA175] Length = 487 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 54/286 (18%), Positives = 105/286 (36%), Gaps = 10/286 (3%) Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---N 186 + + + + + + +RA +L + + +S +V+ N Sbjct: 192 IFPGAQSLISSAIEKIGQFENISDGEMVKRAYKLKLNQNDKQQLEEDEFTSKVQVLPGSN 251 Query: 187 LLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GD 244 L + G +++ L IA + +Q+ F + S +++ + S G D Sbjct: 252 ALLVRGTPEEIQLAKRIATLIDVKRQQLLFFLRVYDVSVERTEALGVNSSWLNGSRGLYD 311 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 V D F AL R + E L + Q F G + V S Sbjct: 312 IIVPPFTDTVDFFKNFQALYTNNMARGVYETNLLVLENQQGHF--GKKETATVVLISDKQ 369 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLR---IQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 S + L+ T +L G++ + I+ +S+ A P + + V Sbjct: 370 VSTQKIEAENSLYVTGRLLPSGKVQAKFSYIEESLSDDKAEGGATQAPRVNSQSLTSEVY 429 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + G T++L G ++ G+P+LS IP LG LF++ + + + Sbjct: 430 IEPGQTVILGGFDNTVTDSVESGVPILSSIPWLGELFKSKKETKRK 475 >gi|254430712|ref|ZP_05044415.1| general secretion pathway protein D [Cyanobium sp. PCC 7001] gi|197625165|gb|EDY37724.1| general secretion pathway protein D [Cyanobium sp. PCC 7001] Length = 849 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 78/247 (31%), Gaps = 45/247 (18%) Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 G+ S S F + + +F + A + + + LA PTL Sbjct: 577 NGTVSRTRSSNNGGFSNRLDVASTPGNPGNNYAEDTFYDFVRAQITSGSTKLLASPTLIL 636 Query: 280 ISG---------------------------------QSASFTSGGQHL--YKTVSSSTGA 304 G + Y+ + G Sbjct: 637 QENAAELRGAGITGSTDSPGGLDEYSPDSPIGRRRANEGVVRVGTNVVTNYQVTTPEGGG 696 Query: 305 TSV---TTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRK 355 V G+VL + G + + VS ++ VR+ Sbjct: 697 NIVCDPEVSTAGLVLGARIEKIDDNGFVTFALSPSVSAITGQEQAPEGCGSNLNILSVRR 756 Query: 356 ADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 DT V + G T++L G++ D + + P+L IP++G FR++ +E+ E+ I Sbjct: 757 LDTGAVRVRDGQTLILTGVISDFDRSVVSKWPILGDIPLIGQFFRSTSNQKEKRELVIMV 816 Query: 415 TPFLVKP 421 TP ++ Sbjct: 817 TPRIIND 823 >gi|224827067|ref|ZP_03700164.1| type II and III secretion system protein [Lutiella nitroferrum 2002] gi|224600733|gb|EEG06919.1| type II and III secretion system protein [Lutiella nitroferrum 2002] Length = 427 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 64/311 (20%), Positives = 106/311 (34%), Gaps = 38/311 (12%) Query: 118 RDIAHLEMTLRRFIADSNIRVE--------MVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 RD+A+L LR + + V S T G + D + V + + + Sbjct: 134 RDLAYLTELLRPLFKNGSFTVNRTVRAAPGNASSTPAPSGTAAALIDQKSDVMVFQGTAA 193 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 + K+V+ ++ A + V +K + EV + GFQ ++ S Sbjct: 194 EIDM-------LKRVLPQVDTAMGE-VLVKGVVYEVSTGQNEASGFQLAL---------S 236 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G + L + + + AL + + ++ P L SG+SAS T Sbjct: 237 LLGGKLGVTIGTPPKGDNAITLKTGAIDAAIGALAGDSRFKVVSTPYLRVKSGRSASLTV 296 Query: 290 GGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 G T S+ GV+ + P V I L + +VS V Sbjct: 297 GQDVPVLGSVSYPQGGGTPVRSIEYKSSGVIFNIAPQV-RDRTIDLEVSQQVSNFVKTET 355 Query: 345 A-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 D P+ R+ T V G IVL GL + + G+ L R Sbjct: 356 GVDDSPTLIKRELRTHVSALDGELIVLGGLRDEKDNASRTGLSFLPD------FLRARSS 409 Query: 404 NREETEIFIAA 414 + +TEI + Sbjct: 410 SSNQTEILLML 420 >gi|167817938|ref|ZP_02449618.1| putative bacteriophage-related lipoprotein [Burkholderia pseudomallei 91] Length = 403 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 16/215 (7%) Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALER 265 +++ ++ + T S++ G+ GD S RF+ + + AL Sbjct: 191 VVRGWVYEVANTDSANSAWSIAVRLLSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNA 250 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTP 320 + + ++ P + +SG+ G Q ++ SS T S+T D G++ P Sbjct: 251 DSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEP 310 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 TV+ I L+++ E+S+ V D P+ R+ T L G +VL GL++D Sbjct: 311 TVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDA 369 Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 + G L + F +++ TE+ + Sbjct: 370 TARSGYSWLP------SFFDGRSSSKQRTEVLLVL 398 >gi|221271462|dbj|BAH15014.1| putative type III secretion system apparatus protein VscC2 [Vibrio parahaemolyticus] Length = 488 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 60/292 (20%), Positives = 101/292 (34%), Gaps = 17/292 (5%) Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN- 186 + + + + G + I D + + LS+ R + Sbjct: 189 QATFPGAQSLIAAAITNI---GQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQA 245 Query: 187 ------LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 LL D+V L IA + +Q+ F + S+ ++F D S Sbjct: 246 LPGSNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKENFGVDSSWVNGS 305 Query: 241 EG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G D V + F AL R + E L + Q F G + Sbjct: 306 RGVYDLVVPPFTETIDFLRNFQALASNGIARGVYETNLLVLENQQGHF--GKKQTATIAL 363 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ----TEVSEPVIGVNAGDMPSYRVRK 355 S + L+ T +L G + RIQ + + N+ P + Sbjct: 364 ISNRQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDEEDSDNSNRPPRVSSQS 423 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 ++ V + G TI+L G QQ + GIP+LS IP+LG LF+++ + + Sbjct: 424 LNSEVYIKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475 >gi|119510022|ref|ZP_01629163.1| general secretion pathway protein D [Nodularia spumigena CCY9414] gi|119465346|gb|EAW46242.1| general secretion pathway protein D [Nodularia spumigena CCY9414] Length = 826 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 19/208 (9%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASF-----TSGGQHLYKTVSSSTGATSVT-- 308 L A + + L +PTL GQ+A G T T + SVT Sbjct: 615 LLASLQAQIQNGNAKILTDPTLIVQEGQTADVRLTQEVVGNIIREITRGDGTSSESVTAD 674 Query: 309 THDYGVVLHFTP-TVLSPG-------RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT-T 359 + G+ L + G Q + G + + R + T Sbjct: 675 KVNVGLTLAVKVDRIDDNGFVSLSVSPSVSSPQAPAEINLGGSGSQRIFLVSTRSLTSGT 734 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 + L G T++L+G++++ + +P+L +P++G+LFR + + E+ + TP + Sbjct: 735 IRLRDGQTLILSGIIQESDRTSVSKLPILGDLPLIGSLFRRTNRQNQRQEVIVLLTPQI- 793 Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNR 447 + + S +Y+ + + R Sbjct: 794 --MDDSENSAYGYNYTPSPEVRQMLERR 819 >gi|327538107|gb|EGF24796.1| protein containing Type II and III secretion system domain [Rhodopirellula baltica WH47] Length = 1062 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 61/313 (19%), Positives = 97/313 (30%), Gaps = 78/313 (24%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------SITGSSSGPSKSFAAD 233 ++ L Q+T++V + +QIG + G SGP + D Sbjct: 732 DLLESLRRLQNLQITIEVRFITLSDTFFEQIGIDFDLQFDDNAPGLPGDDSGPEITIGLD 791 Query: 234 FGGKFVSE-------------------GGDFSVKGVLDRFSFET--VLHALERATAIRTL 272 G ++ G S G E L A + + + Sbjct: 792 GDGTPTADLDIRLDQNSGATVPFGAPDAGAISTLGFAILSDIEAYFFLQAAQGDSRTNVM 851 Query: 273 AEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTHDY------GVVLHFTPTVLSP 325 P +T GQ AS + T + G +V G L+ V Sbjct: 852 QAPKVTLFDGQIASIQDQTSRPFVTSIVPVVGDFAVAQQPVIVVLDEGTRLNVQGVVSED 911 Query: 326 GR-IGLRIQTEVSEP----------------------------------------VIGVN 344 R + L + S+ V Sbjct: 912 KRFVRLTLIPTFSQIGEVNEFTFQGNSTTRNTSNRNVDTNGDGVIDEEDEQEEESVTQGT 971 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 P++ +TTV +P GGTI+L G+ + + + G+P LSKIP + LFRN+ Sbjct: 972 TVQQPTFAFTTVNTTVSVPDGGTILLGGIKRMSEGRNERGVPFLSKIPYVSRLFRNTAVG 1031 Query: 405 REETEIFIAATPF 417 RE + + TP Sbjct: 1032 RESRSLMMMVTPR 1044 >gi|330882527|gb|EGH16676.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. race 4] Length = 635 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 75/215 (34%), Gaps = 16/215 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVR 206 G + + ++ S + + K++ + + QV ++ I EV Sbjct: 414 GANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 473 Query: 207 RDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------SFET 258 +G Q + +SG + + G + G ++ F + + Sbjct: 474 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 533 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDY 312 L ALE + L+ P+L ++ Q A G S++T +SV Sbjct: 534 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 593 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 GV+L P + G + + IQ +VS N D Sbjct: 594 GVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSD 628 >gi|257458871|ref|ZP_05623994.1| bacterial type II and III secretion system protein [Campylobacter gracilis RM3268] gi|257443859|gb|EEV18979.1| bacterial type II and III secretion system protein [Campylobacter gracilis RM3268] Length = 389 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 93/250 (37%), Gaps = 15/250 (6%) Query: 175 QYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-SFA 231 + ++ +++ + + + +QV K+TI E + K IG + G S ++ Sbjct: 142 KASDDEYSDIIDFVQRSDKKLEQVNFKLTILETNTNDYKDIGSHLNSLGDVVTRSDLNYF 201 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + S + + F VL L++ P L A SG F+S Sbjct: 202 INLITMPYSAETNVVTT---KKRGFYGVLSLLQQNGVTTIKQSPFLVAKSGAEVYFSSVE 258 Query: 292 QHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Y T +S+ S D G+ + P VL + + V + + N Sbjct: 259 NVPYLTNTSTYTQNGTATQNSYEYKDVGLKIKIRPVVLQNSNVDFSLDLVVEDLLDTQNT 318 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P ++ + L G +VL+G+ KD + G+PLL IPIL LF Sbjct: 319 LT-PRTSKKELKSNYSLKRGELLVLSGINKDVAYSKRNGVPLLKDIPILKYLFS--IEQN 375 Query: 406 EETEIFIAAT 415 ++ I T Sbjct: 376 YKSTSIITLT 385 >gi|126441183|ref|YP_001060902.1| Type II secretory pathway, component PulD [Burkholderia pseudomallei 668] gi|126220676|gb|ABN84182.1| type II secretory pathway, component PulD [Burkholderia pseudomallei 668] Length = 448 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 126/353 (35%), Gaps = 40/353 (11%) Query: 80 VVHSPRTMYLFGKNVGQA------NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA- 132 V + + K G A +V + +++ L LIE I M L ++ Sbjct: 113 QVVTRNGVDYVTKKPGAAREKVDQDVFVYKPRYRRVDYLRALIEPMIGARAMPLMSPVSV 172 Query: 133 --DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 V++ +T G V + +V+ L G + K V L + Sbjct: 173 PSQPVGAVQVPGETAAPAGDVP-AMPVETSVQARGDDLVIVGSHDEVALLRKVVPELDTV 231 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 E V ++ + EV SI G+ GD S Sbjct: 232 PSE--VVVRGWVYEVANTDSTNTA--WSIAVRM----------LSGQLRVSSGDTSSDAS 277 Query: 251 LDRFS---FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305 RF+ + + AL + + ++ P + +SG+ G Q ++ S G+T Sbjct: 278 AVRFTGPGVDAAISALNADSRFKVVSAPHVRIVSGERVRLNVGQQVPTQSSVSYQGSTGT 337 Query: 306 ---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVE 361 S+T D G++ PTV+ I L+++ E+S+ V D P+ R+ T Sbjct: 338 PVQSITYQDAGLIFDVEPTVMRE-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTR 396 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 L G +VL GL++D + G L + +++ TE+ + Sbjct: 397 LKDGEVVVLGGLIQDRNATARSGYAWLP------SFLDGRSSSKQRTEVLLVL 443 >gi|304415540|ref|ZP_07396167.1| type III secretion apparatus protein [Candidatus Regiella insecticola LSR1] gi|304282604|gb|EFL91140.1| type III secretion apparatus protein [Candidatus Regiella insecticola LSR1] Length = 360 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 96/292 (32%), Gaps = 21/292 (7%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209 VR+ Q S L GR ++ + K+++ L+ + + L V I ++ + Sbjct: 48 KVRSDIALQVVANPSTNSLLVKGRTEHI-AFVKQLIAQLDQP-KRHIELSVWIIDLEKTA 105 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 L G + + + GKF + LD F + AL + Sbjct: 106 LXXXX---XXXXXXLGVNFNVRININGKF-GASFNGGGASTLDGSRFIASIMALSQQNKA 161 Query: 270 RTLAEPT-LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF---------T 319 ++ P + A F + + ++ + YG + Sbjct: 162 NIVSRPDCVLTQENIPAIFDNNRAFYSEVKGDRV--ATLESVTYGTSVSVLXXXXXXXXX 219 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P +I + + E + + +P K T +P G ++++ G +D Sbjct: 220 PRFAEQSQIEMMLNIEDGNEIAQNDNEIKTSLPKVGRTKISTVARVPKGKSLLIGGYTRD 279 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 + IP L +P +G LFR + T P ++ RD S Sbjct: 280 SSNNTEAKIPGLGSLPWVGGLFRYRQSASANTVRVFLIQPREIEGPLSRDAS 331 >gi|328469624|gb|EGF40560.1| putative type III secretion system EscC protein [Vibrio parahaemolyticus 10329] Length = 488 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 86/226 (38%), Gaps = 7/226 (3%) Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF 245 LL D+V L IA + +Q+ F + S+ + F D S G D Sbjct: 252 LLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGVYDL 311 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 V + F AL R + E L A+ Q F G + S Sbjct: 312 VVPPFSETIDFLRNFQALASNGIARGVYETNLLALENQQGHF--GKKQTATIALISNKQV 369 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQ----TEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + L+ T +L G + RIQ + + N+ P + ++ V Sbjct: 370 ETQKIEADNSLYVTGRLLPSGDVQARIQYVEESLDDDEEDSDNSNRPPRVSSQSLNSEVY 429 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + G TI+L G QQ + GIP+LS IP+LG LF+++ + + Sbjct: 430 IKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475 >gi|148240700|ref|YP_001226087.1| general secretory pathway protein D [Synechococcus sp. WH 7803] gi|147849239|emb|CAK24790.1| General secretory pathway protein D [Synechococcus sp. WH 7803] Length = 773 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 73/202 (36%), Gaps = 35/202 (17%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISG-----------------------QSASFTSGG 291 F L A ++++ + LA PTL G A + G Sbjct: 550 QFFDFLAAQIQSSSTKILASPTLIIQEGSESTQGSDASKISADGKVGRERTNEALVSVGT 609 Query: 292 QHL--YKTVSSSTGAT--SVTTHDYGVVL--HFTPTVLSPGRIGLRIQTEVSE----PVI 341 + + ++ G + G+ + G + + E+S P Sbjct: 610 KLVTSFEVKQDENGNNFCQPVFSNAGLTFGARVE-KIDDNGFVTFSLSPEISAAVGVPET 668 Query: 342 GVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 N G++ R DT + + G T++L G++ D Q P+L IP +G FR+ Sbjct: 669 IGNCGNINIINSRTLDTGKIRVRDGQTLILTGVISDTDVQAVTKWPILGDIPFIGQFFRS 728 Query: 401 SRFNREETEIFIAATPFLVKPV 422 S +R + E+ I TP ++ Sbjct: 729 SSGDRTKNELVILVTPRIIDDT 750 >gi|171911301|ref|ZP_02926771.1| type II and III secretion system protein [Verrucomicrobium spinosum DSM 4136] Length = 173 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 25/134 (18%) Query: 314 VVLHFTPTVLSPGR-IGLRIQTEVSE------------------------PVIGVNAGDM 348 + L P + G I L + EV+E + N + Sbjct: 2 LRLEVDPVIGPDGYTIDLNLAPEVTEFEGFINYGSPINTASTDALGNPTTVTLTENKIEQ 61 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P + RK T V + G T+ + GL+++D+Q +++ +P+L +P LG LF++ + + Sbjct: 62 PVFSTRKVTTAVTVWDGQTVAMGGLIREDVQDVEDKVPILGDLPFLGRLFQSKAEDHFKR 121 Query: 409 EIFIAATPFLVKPV 422 + I T L+ P Sbjct: 122 NLMILVTAKLIDPS 135 >gi|330951304|gb|EGH51564.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae Cit 7] Length = 106 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 47/102 (46%) Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 RI + ++ EP +P + + + V + G TIV+ G+ + ++ Sbjct: 1 TPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVV 60 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + +P L +P LG LFR + ++E+ + TP ++ A+ Sbjct: 61 DKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRIMNNQAI 102 >gi|94969549|ref|YP_591597.1| TPR repeat-containing protein [Candidatus Koribacter versatilis Ellin345] gi|94551599|gb|ABF41523.1| TPR repeat protein [Candidatus Koribacter versatilis Ellin345] Length = 619 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 51/293 (17%), Positives = 95/293 (32%), Gaps = 60/293 (20%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 A QV L V++ V + Q+G Q ++ A S G Sbjct: 319 ASRPQVALDVSVYRVSGTLTHQLGVQPPNQFTTFNLGSVLAGLGATNLQSLINQIISSGA 378 Query: 251 LDRFSFETVLHALERATAIRT--------------------------------------- 271 +++ + T + AL T Sbjct: 379 INQAN-GTDISALITQALGNTQLATLFQTPFVTYGGGLTLMALTVPGTTLNLNFSKANFQ 437 Query: 272 -LAEPTLTAISGQSASFTSGGQHLY------------------KTVSSSTGATSVTTHDY 312 LA L A +A+ G ++ +T + S D Sbjct: 438 NLAHMQLRASQNNAATMRIGERYPILNATFAPIYNTPQISALLRTGTYVAPFPSFNYEDL 497 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G+ + TP++ + L ++ ++ G + G MP ++ T+ L G V+ Sbjct: 498 GLTVKATPSIQGNRDVRLNLEMQMRSLGAGTSNG-MPIINNQEYKGTISLKDGEPGVVVS 556 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 L + + GIP L +IP LG+ ++ E+E+ + TP ++K + + Sbjct: 557 YLTESESRSISGIPGLGQIPGLGSAVASTDREGVESELLVIITPHVLKVIEPK 609 >gi|322436034|ref|YP_004218246.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] gi|321163761|gb|ADW69466.1| type II and III secretion system protein [Acidobacterium sp. MP5ACTX9] Length = 635 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 58/356 (16%), Positives = 119/356 (33%), Gaps = 61/356 (17%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD-----------SQRAVELSETFL 168 + L ++ I ++ S ++V+ T++ + + V + + Sbjct: 265 LNELVNIIKNVFDVKQIAIQQNSSSLVVRAPEPTLKAVNYTIADLVDGNAQVVMELKLYT 324 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS- 227 R + ++ + ++A E Q I + +++Q Q T S + + Sbjct: 325 VDKTRTRNLGLTTPNSVGGFSVAAEAQ-----GIVSANQSVIQQAISQGLFTPSGNAATD 379 Query: 228 ----------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 A D + + L+ + R L + T+ Sbjct: 380 TITEAIYLIASGLATDAKLSGLLTLVGGGLTTAGIYVGSNPTLNFALDTSDTRALDDITV 439 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGAT-------------------------------- 305 + Q+ + G ++ T + S+G + Sbjct: 440 RSGDRQTTTLKVGSKYPITTSTYSSGVSAATSSALAGVTVGGVSASSLLNQYLGASSQTI 499 Query: 306 -SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 + D G+ L TPTVL G I + I ++ E + G +A ++P R + V P Sbjct: 500 PQIQYEDIGITLKTTPTVLKSGLITMHIDLKI-EALTGQSANNIPVLTSRVFTSDVTCPE 558 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 G T ++ L GIP L+++P + R+ +E+ + TP LV+ Sbjct: 559 GSTAMMLSQLSSQESAAVSGIPGLAELPGFQTSVADRITERDSSELVMMVTPHLVR 614 >gi|157163911|ref|YP_001467431.1| type II and III secretion system protein [Campylobacter concisus 13826] gi|112801005|gb|EAT98349.1| bacterial type II and III secretion system protein [Campylobacter concisus 13826] Length = 380 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 12/232 (5%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +QVT K+TI E +K +G + G + A + S S + Sbjct: 155 EQVTFKLTITETNLKDIKDLGTN--LQGLLKPLNHGDLAYYINLITSPYITNSNVIKNND 212 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SV 307 +F +L+ L+ + ++ P LTA + F+S Y + S Sbjct: 213 SAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTDSY 272 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D G+ ++ P +LS I + + E ++ ++ P ++ ++ L G Sbjct: 273 EYKDIGLKINLKPIILSD-HIDFDLHLIL-EDILSQSSSFTPIVSKKELKSSYSLKRGDV 330 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +VL+G+ K + + G+P+L I +L LF E + T ++ Sbjct: 331 LVLSGINKKTNAKQRNGVPVLKDIWLLKYLFS--VEQDSEINSVLTLTIQII 380 >gi|229515151|ref|ZP_04404611.1| hypothetical protein VCB_002808 [Vibrio cholerae TMA 21] gi|71480608|gb|AAZ32230.1| VcsC2 [Vibrio cholerae non-O1/non-O139] gi|229347856|gb|EEO12815.1| hypothetical protein VCB_002808 [Vibrio cholerae TMA 21] Length = 485 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 3/222 (1%) Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF 245 LL +++V L IA + +Q+ F + S+ ++ D G S G D Sbjct: 253 LLVRGTQEEVKLAKRIAALIDVKRRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDI 312 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 V + F AL R++ E L A+ Q F G + S Sbjct: 313 VVPPFTETTDFLKNFQALYTNGIARSVYETNLLALENQQGQF--GKKQTATLTLISDKEV 370 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 + L+ T +L G++ RIQ ++ P + ++ V + G Sbjct: 371 KTEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDEEGDSNRPPRVSSQSLNSEVYIQPG 430 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 T++L G QQ + G+P+LS IP+LG LF+ + ++ + Sbjct: 431 QTVILGGFDNTVTQQQESGVPVLSSIPLLGELFKYTSESKHK 472 >gi|270637582|ref|ZP_06222100.1| competence protein E [Haemophilus influenzae HK1212] gi|270317386|gb|EFA28906.1| competence protein E [Haemophilus influenzae HK1212] Length = 90 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 38/70 (54%) Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + ++ +T V G TIVL G+ D I + ++ +PLL IP++ LF ++ E+ Sbjct: 3 FLKQEINTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKREL 62 Query: 411 FIAATPFLVK 420 I TP ++K Sbjct: 63 VIFVTPHILK 72 >gi|157163960|ref|YP_001466804.1| type II and III secretion system protein [Campylobacter concisus 13826] gi|112801256|gb|EAT98600.1| bacterial type II and III secretion system protein [Campylobacter concisus 13826] Length = 380 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 90/227 (39%), Gaps = 10/227 (4%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 +QVT K+TI E +K +G + G + A + S S D Sbjct: 155 EQVTFKLTITETNLKDIKDLGTN--LQGLLKPLNHGDLAYYINLITSPYITNSNVIKNDD 212 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SV 307 +F +L+ L+ + ++ P LTA + F+S Y + S Sbjct: 213 SAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTDSY 272 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 D G+ ++ P +LS I + + E ++ ++ P ++ ++ L G Sbjct: 273 EYKDIGLKINLKPIILSD-HIDFDLHLIL-EDILSQSSSLTPIVSKKELKSSYSLKRGDV 330 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 +VL+G+ K + + G+P+L I +L LF + + + + + Sbjct: 331 LVLSGINKKTTAKQRNGVPVLKDIWLLKYLFSVEQDSEINSVLTLTI 377 >gi|320102660|ref|YP_004178251.1| type II and III secretion system protein [Isosphaera pallida ATCC 43644] gi|319749942|gb|ADV61702.1| type II and III secretion system protein [Isosphaera pallida ATCC 43644] Length = 1626 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 34/233 (14%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 ++ ++ A FV G +L + A + + P + Sbjct: 1374 NLNIPFVNNTEQAATPTLAGFVPGAGATLGVSILSDLEVYLFMRAAQTDVRSNIIQAPKV 1433 Query: 278 TAISG-------QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IG 329 T +G Q+ F + V G+ L+ P + + R + Sbjct: 1434 TTFNGAFAQVASQTQQFYVASVTPVVAFGAVAFTPDVQPLPIGITLNVQPVITADRRYVR 1493 Query: 330 LRIQT--------------------------EVSEPVIGVNAGDMPSYRVRKADTTVELP 363 L + + +P++ + +TTV +P Sbjct: 1494 LSLNPVFISNASFQQFTVAGGVGGIGGIGGIGGGDGAQIATTIQLPTFTLFTVNTTVTVP 1553 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 GGT++L G+ + ++ + G+P+LSK P L LFRN R I + TP Sbjct: 1554 DGGTVLLGGVKTSEEERREFGVPVLSKTPYLNRLFRNIGIGRTSRSIMMMVTP 1606 >gi|229529211|ref|ZP_04418601.1| hypothetical protein VCG_002304 [Vibrio cholerae 12129(1)] gi|229332985|gb|EEN98471.1| hypothetical protein VCG_002304 [Vibrio cholerae 12129(1)] Length = 489 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 7/226 (3%) Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF 245 LL +++V L IA + +Q+ F + S+ ++ D G S G D Sbjct: 253 LLVRGTQEEVKLAKRIAALIDVKRRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDI 312 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 V + F AL R++ E L A+ Q F G + S Sbjct: 313 VVPPFTETTDFLKNFQALYTNGIARSVYETNLLALENQQGQF--GKKQTATLTLISNREV 370 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQ-TEVSEPVIGVNAGDM---PSYRVRKADTTVE 361 + L+ T +L G++ RIQ E + G N+ P + ++ V Sbjct: 371 KTEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDDEGENSDGSQRPPRVSSQSLNSEVY 430 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + G T++L G QQ + G+P+LS IP+LG LF+ + ++ + Sbjct: 431 IQPGQTVILGGFDNTVTQQQESGVPVLSSIPLLGELFKYTSESKHK 476 >gi|213026060|ref|ZP_03340507.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 173 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 6/168 (3%) Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 F L+ALE+++ L++P++ ++ A + T + + G + Sbjct: 1 FMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTKLQGEKVAKLESITTGSL 58 Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLA 371 L TP +L+ +I L + + + + D +P + + + L +G +++L Sbjct: 59 LRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLG 118 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G + + IPLL IP++G LFRN +V Sbjct: 119 GFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVV 166 >gi|260899863|ref|ZP_05908258.1| protein VcsC2 [Vibrio parahaemolyticus AQ4037] gi|308107338|gb|EFO44878.1| protein VcsC2 [Vibrio parahaemolyticus AQ4037] Length = 488 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 85/226 (37%), Gaps = 7/226 (3%) Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF 245 LL D+V L IA + +Q+ F + S+ ++F D S G D Sbjct: 252 LLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKENFGVDSSWVNGSRGVYDL 311 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 V + F L R + E L + Q F G + S Sbjct: 312 VVPPFTETIDFLRNFQVLASNGIARGVYETNLLVLENQQGHF--GKKQTATIALISNRQV 369 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQ----TEVSEPVIGVNAGDMPSYRVRKADTTVE 361 + L+ T +L G + RIQ + + N+ P + ++ V Sbjct: 370 ETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDEEDSDNSNRPPRVSSQSLNSEVY 429 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + G TI+L G QQ + GIP+LS IP+LG LF+++ + + Sbjct: 430 IKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475 >gi|330862295|emb|CBX72456.1| hypothetical protein YEW_HH31880 [Yersinia enterocolitica W22703] Length = 158 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 50/119 (42%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 V + + + + +++ ++ V VS AD + ++ ++ K G A I Sbjct: 26 AVNRANAEPVYLSTGQSYMIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFI 85 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 L + + IL++ I +R +S+I + + D+ +L G V T + ++ Sbjct: 86 LFNQNHHPIKKSAILVDNTITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKKQ 144 >gi|145589562|ref|YP_001156159.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047968|gb|ABP34595.1| type II and III secretion system protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 759 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 5/186 (2%) Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + ++ V S+ + A ++ + +A PTLTA+ ++F SG Sbjct: 482 IGTATSATINSVSGLVSYSLNI-ANSTSSNSQVIARPTLTALDRIPSTFYSGAVITAGLN 540 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK--- 355 +T GV L TPT + + L ++ S + V + Sbjct: 541 GGGVSGAQITNIPTGVSLSVTPTFVDEESMMLAVKVSRSYVTSQNAGYGGFNASVSQDQH 600 Query: 356 -ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 V++ G T++L GL + L++G+P+L IPI+ F + + + + Sbjct: 601 AVTANVKIKYGETLILDGLSSRAVSGLQDGVPVLQDIPIIQYFFNQKQQQQYSENVVVLV 660 Query: 415 TPFLVK 420 TP V+ Sbjct: 661 TPRKVQ 666 >gi|311279575|ref|YP_003941806.1| type II and III secretion system protein [Enterobacter cloacae SCF1] gi|308748770|gb|ADO48522.1| type II and III secretion system protein [Enterobacter cloacae SCF1] Length = 406 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 30/245 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K+V+ ++ AG D+V + + EV+ T +G + AA G + Sbjct: 178 KRVLPEIDSAG-DEVFIAGYVFEVQ-------------TSERNGSGLALAAKLLGGKIEI 223 Query: 242 GGDFSVKGV-----LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G G + S + + + ++ P L SG SA+F+ G + Sbjct: 224 GMGNMSGGYENFIRIGGSSLDAMYELFRTDSRFNVVSSPRLRVKSGYSATFSVGQEVPVL 283 Query: 297 TV---SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYR 352 + + ++ SV GV+L TP+V L+I ++S + + P+ Sbjct: 284 SGIDRNQNSTYQSVDYRSAGVILDVTPSV-RNSVTDLKISQQLSNFIKTDTGVNNTPTLI 342 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 R+ T V + SG +VL GL + + G L K +LG + + +T+I I Sbjct: 343 KREVSTFVSVKSGDIVVLGGLAETKDSDARTGFSFLPK--VLG----SRSDEKSKTDILI 396 Query: 413 AATPF 417 Sbjct: 397 VLQVR 401 >gi|318040699|ref|ZP_07972655.1| general secretory pathway protein D [Synechococcus sp. CB0101] Length = 167 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%) Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADT-TVELPSGGTIVLAGLLKD 376 + G + + E+S V G + R DT V + G T++L G++ D Sbjct: 38 KIDDNGFVTFSLSPEISAAVGTQQIDRCGIIYQINDRLLDTGKVRVRDGQTLILTGVISD 97 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 + + + P+L +P++G FR S +R ++E+ I TP +VK D Sbjct: 98 EDRSVVTKWPILGDLPLVGQFFRRSSGDRRKSELVIMVTPRIVKDDQGGD 147 >gi|319774909|ref|YP_004134178.1| hypothetical protein Theam_1790 [Thermovibrio ammonificans HB-1] gi|317115257|gb|ADU97746.1| hypothetical protein Theam_1790 [Thermovibrio ammonificans HB-1] Length = 570 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 20/249 (8%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 +KV+N L A QV +V I EV Q G S S + G +V + Sbjct: 323 EKVINSLIKAVSQQVQFRVAIYEVTYSDEFQSGVDWSAVFGSQNLQITTGQSTG--YVFD 380 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTV 298 + G + F++ ++ L R ++T+ + + +SG++ + G + + Sbjct: 381 LSGYFKAGKSNPFNY--LVKLLSRYGKVKTIYDNYVRTLSGETVAIVPGETYRFLESIET 438 Query: 299 SSSTGATSVTTHDY------GVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAG 346 S VT G+ L+ TP G + N Sbjct: 439 QSQADTKLVTQVPVFKELSLGIQLYITPLKRDDGTTQYELDVTNRFIKSLKTYTFDNNTY 498 Query: 347 DMPSYRVRK-ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 +P R T +P V+ G+ + + + G+P L IP+ G LF+ Sbjct: 499 TVPELIGRTDISLTTVIPKHHFEVITGIKQYKLDSSQSGVPGLMDIPVAGELFKGRSRKA 558 Query: 406 EETEIFIAA 414 +E +A Sbjct: 559 TLSEYIVAI 567 >gi|89885888|ref|YP_516086.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] gi|89347886|gb|ABD72088.1| type II and III secretion system protein [Rhodoferax ferrireducens T118] Length = 622 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 89/245 (36%), Gaps = 27/245 (11%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--DFGGKFVSEGGDFSVKGV--L 251 + I EV Q G + + + GP S A GG V++ G + Sbjct: 192 IVFDTYIYEVNLTDGAQTGIKWNKLAMAIGPGGSLGALGAVGGSTVADSGGMGFSAIYKG 251 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 RF + L+ ++T+A+P + +SG F +G Y + + +T++ Sbjct: 252 SRFDLDAFFSFLQTQGNVKTIAQPKIAIMSGSKGGFKAGSTTKYVSQVGTNSSTTINQTT 311 Query: 312 Y-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV------NAGDMPSYRVRKADT 358 G+ L T V S G + RI+ +SE + + +P R+ T Sbjct: 312 VSTDTAVSGLDLSLTGDV-SDGTVYARIRISLSELIRFNSFEALGTSLQLPQTTSRELTT 370 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK---IPILGALFRNSRFNREETEIFIAAT 415 + G ++L G+ G+P +P +S TE+ + Sbjct: 371 AIRARPGDVVLLGGVNNSSESSDYSGLPGEKGQMLVP------TSSNKKVARTELVMVMK 424 Query: 416 PFLVK 420 P +V+ Sbjct: 425 PKIVR 429 >gi|168701297|ref|ZP_02733574.1| hypothetical protein GobsU_17361 [Gemmata obscuriglobus UQM 2246] Length = 1374 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 75/363 (20%), Positives = 119/363 (32%), Gaps = 49/363 (13%) Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G V ++N + +++ L LRR + D I VE+ V L Sbjct: 1005 GGGKVEFFDLGSALVVNQTADVIVEVSDLLEALRR-LQDLAIAVEI--RIVSLAESFFER 1061 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214 +V + S + +N +N G T + Sbjct: 1062 MGVDFSVNIKTNTSSFEPALTSGTFRPQPYINDINNKG--------TTVGLTPAGSFTPD 1113 Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 I +S + ++ + GG L+ T L + + Sbjct: 1114 LDVPIRATSFNRAIPGFGNYPNTPGNNGGISLGLAFLNDIQVYTFLEMAQGDQRSNIMQA 1173 Query: 275 PTLTAISGQSASFTSGGQHLYKT--------------------VSSSTGATSVT------ 308 P LT +GQ+A+ T + T SS G S+T Sbjct: 1174 PKLTMFNGQTATLTVAETQFFVTNVQVVSVNGQIVFIPQQQQLPSSGQGTLSITVQAVVS 1233 Query: 309 --THDYGVVLHFTPTVLSPGRIGL-RIQTEVSEPVIGVNAGD---------MPSYRVRKA 356 + L V + + L I T ++ G + G PS+ + Sbjct: 1234 ADRRFVRLNLPVQLGVQAGAAVPLFPITTFITPVFEGGSQGQPIPFTQFLQQPSFTLLDI 1293 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 TTV P GGT++L GL + + + G P LSKIP L LF+N RE T + I TP Sbjct: 1294 QTTVVCPDGGTVLLGGLKRLSESRNEFGPPFLSKIPYLNRLFKNVGVGRETTHLMIMVTP 1353 Query: 417 FLV 419 ++ Sbjct: 1354 RII 1356 >gi|270487709|ref|ZP_06204783.1| conserved domain protein [Yersinia pestis KIM D27] gi|270336213|gb|EFA46990.1| conserved domain protein [Yersinia pestis KIM D27] Length = 171 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 58/148 (39%), Gaps = 4/148 (2%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 K+I + + I++V ++ V VS AD + ++ ++ K G A L Sbjct: 14 ANAKQIYLPIGGSHIIKVQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFTLFNK 73 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 + + + +L+ I +R DS I + + ++ +L G T + + Sbjct: 74 NHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTIASI- 132 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAG 192 + ++ ++ + + L+I G Sbjct: 133 ---VGEATASKKEKREKRVIKATLSIRG 157 >gi|87300799|ref|ZP_01083641.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 5701] gi|87284670|gb|EAQ76622.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. WH 5701] Length = 911 Score = 100 bits (248), Expect = 8e-19, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 10/164 (6%) Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPT 321 L AT RT A + + Q + T ++ + T G+ Sbjct: 729 LSPATIGRTRANESFVTVGRQ-----VVSAYDVTTTANVGVSCEPTFSTAGLTFGARVSK 783 Query: 322 VLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDD 377 + G + + +S V G + R+R+ DT +V + G T++L G++ DD Sbjct: 784 IDDNGFVTFTLSPAISGVVDRQPVPGCGFIDILRLRRLDTGSVRVRDGQTLILTGVISDD 843 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 Q+ P+L +P+LG FR + +R + E+ I TP ++ Sbjct: 844 DFQVVSKWPILGDLPLLGQFFRKTSGSRNKNELVILVTPRIIDD 887 >gi|87311027|ref|ZP_01093152.1| RhcC2 [Blastopirellula marina DSM 3645] gi|87286317|gb|EAQ78226.1| RhcC2 [Blastopirellula marina DSM 3645] Length = 300 Score = 99.7 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 18/239 (7%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN-----IAGEDQVTLKVTIA 203 G Q + E L + Q +S + ++ QV + V + Sbjct: 18 GTAPAKQVAPVPAAAEEETLQAEKQLQRLIASRDALTQEIDRLRKRTGQHSQVFVSVQVF 77 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 E+ Q G ++ + A+ G V G + + D + + V+ L Sbjct: 78 ELTHRKTPQ------ANGFAAALAAGGLAEPG--PVETGSATVYRVIADDEALKQVVAKL 129 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 E++ A++ LAEPTL +SGQ ASF GG+ + V S+ G+ ++ YG +H P VL Sbjct: 130 EKSGALKVLAEPTLMTVSGQPASFHVGGEFPIQ-VPSADGSPAIEFKAYGAEMHVVPVVL 188 Query: 324 SPGRIGLRIQTEVS--EPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 GRI L ++ +S +P G+ GD +P+ RVR DT+VE+ G VLAGL++ + Sbjct: 189 GQGRIRLGLRPRISELDPDHGIKLGDLTVPALRVRGVDTSVEMHVGDAFVLAGLVQQRV 247 >gi|313681304|ref|YP_004059042.1| type ii and iii secretion system protein [Sulfuricurvum kujiense DSM 16994] gi|313154164|gb|ADR32842.1| type II and III secretion system protein [Sulfuricurvum kujiense DSM 16994] Length = 481 Score = 99.7 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 19/243 (7%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGV 250 + +++I +V +G S+ S + SF A G S G F + Sbjct: 236 IEYEISIYDVELKDNYALGIDWSLVPSLAKDGLSFVASATGSLGSAGASAVPLTFGMIMK 295 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATS 306 D ++ + +++ALE + ++ P L ++G + T G + Y + S G Sbjct: 296 NDTYNGKALVNALENFGKVESVQRPKLLGLAGTNVKLTDGVEAPYISGIQNTSVGNGTAQ 355 Query: 307 VTTHDY----GVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAG--DMPSYRVRKAD 357 V+T G+ ++ +L IGL+I V VN P + + Sbjct: 356 VSTTSATALSGLEINLKSNMLDGTVITDIGLKINDIVGYTSFEVNGNKFSQPQTVTKAIN 415 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 T+ + G IV++GL ++ + G+P L G + + ++E+ I TP Sbjct: 416 NTMRVQPGVPIVISGLFRNKSDKGWNGLPGLGD-SAAGVVGGARHTSNTKSEMVIVVTPR 474 Query: 418 LVK 420 ++K Sbjct: 475 VIK 477 >gi|167947039|ref|ZP_02534113.1| Type II secretory pathway component PulD-like protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 290 Score = 99.7 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 84/228 (36%), Gaps = 25/228 (10%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +ET + + ++ + + + QV ++VTIAEV Q G S+ GS Sbjct: 65 AETGMIAVRTTAKKHQEIERFLTQVLDSARRQVLIEVTIAEVVLSDHFQAGVDWSLIGSD 124 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283 G + + + ++ G ++ L ALE ++ L+ P + ++ Q Sbjct: 125 IGINSAMIGQ--NLLQAPLASLTLSGNINGDPLNLTLKALENFGKVKVLSSPKIMTLNNQ 182 Query: 284 SASFTSGGQHLY------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 A Q +Y + T T+V T G+VL TP V + L Sbjct: 183 PAVLRVTDQRVYMITDVEVEEDQETKTKTRTFETTVNTVPEGLVLTVTPYVDQFDTVMLN 242 Query: 332 IQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVELPSGGTI 368 I+ +S +P ++R+ +T + + SG + Sbjct: 243 IRPTISRILGFVEMRNQELDEANVINRVPQIQLREMETVLRVSSGDSA 290 >gi|187479017|ref|YP_787041.1| type IV pilus assembly protein (partial) [Bordetella avium 197N] gi|115423603|emb|CAJ50142.1| putative type IV pilus assembly protein (partial) [Bordetella avium 197N] Length = 117 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P R RKADT VEL G +++GL+ + IPLL +PI+G+ FR+ ++++E+ Sbjct: 2 IPVLRKRKADTMVELGDGEGFMISGLVSRQTKASVNKIPLLGDLPIIGSFFRSVQYSQED 61 Query: 408 TEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462 E+ I P L +P+A L P + D F + GP ++ G Sbjct: 62 NELVIVVPPRLRQPIARGVTLPLPGARQEMTDSG---FNAWGYHLLGPMAGEQMPG 114 >gi|85713096|ref|ZP_01044131.1| type IV pilus protein, PilN [Idiomarina baltica OS145] gi|85693082|gb|EAQ31045.1| type IV pilus protein, PilN [Idiomarina baltica OS145] Length = 489 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 88/257 (34%), Gaps = 28/257 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--FV 239 + +N LN + QV L V + EVR D +Q S +S + + G Sbjct: 237 DRYINQLNKSLTRQVALDVQVIEVRFDDSEQFTVDWSSVRRTSQGTPWLTSQSGSDNWLQ 296 Query: 240 SEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G F + + R S + ++ AL+ ++ P + ++ Q A + Y Sbjct: 297 QAAGRFILSPLSGPRNSIDILVQALQEQGQVKVSHHPRILTLNHQVAQLLVEEEQAYLAE 356 Query: 299 SSSTGATSVTTHD--------YGVVLHFTPTVLSPGRIGLRIQ------TEVSEPVIGVN 344 S + V G + P +L + L + ++ G N Sbjct: 357 SEVSTTPYVGQQQRLKPGKLTTGFRMFVLPNILKRD-VLLHLSSQMSALQGMNVVQSGDN 415 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ--QLKEGIPLLSKIPILGALFRNSR 402 P + + T++L G +Q + + G+ L LG + Sbjct: 416 MIQTPHTSRKHFFLKALVGHEETLLLTGFRNQTVQAGRTRSGVSWL-----LG---GGQQ 467 Query: 403 FNREETEIFIAATPFLV 419 +RE +E + TP +V Sbjct: 468 KSRENSETLLLITPRIV 484 >gi|329847987|ref|ZP_08263015.1| bacterial type II and III secretion system family protein [Asticcacaulis biprosthecum C19] gi|328843050|gb|EGF92619.1| bacterial type II and III secretion system family protein [Asticcacaulis biprosthecum C19] Length = 545 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 102/312 (32%), Gaps = 20/312 (6%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181 L + + ++ V L G+ ++A R + A Sbjct: 161 QLAALAAERVTQLPADAQTHAEAVRLSGLAY-AATGRKAEAWQSYARYAELRPEAAAPMH 219 Query: 182 KKVMNLLNI--------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 ++ +L+ DQ+++ V I + IG ++ Sbjct: 220 VRISDLVRTEDAATPVSDGPEVPVAPDQISVDVAIILSQTSQRDSIGINLLDGLTAQYGL 279 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPTLTAISGQSAS 286 +S G + +V + ++ R + +A P LTA G+ A Sbjct: 280 QSQRTTTGDAQGNRNMQRTVTEAISIPQLTYNMNLFNRFGQYYQVVARPMLTAYRGEPAD 339 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346 F G K + + + T D G + TP ++ LRI+ S Sbjct: 340 FFVGRSA--KVAVTGVNFSQLETIDIGTQIKVTPVEITATGTRLRIEVTRSFLSGEPAGN 397 Query: 347 DMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 S + TTVE+ G T++L+GL + PL+ +P++G+ F Sbjct: 398 FNESLNTWRQTVSTTVEVAFGTTLILSGLSESVRDSSTTKTPLVGDVPVVGSAFNRRITT 457 Query: 405 REETEIFIAATP 416 + + + TP Sbjct: 458 DKRDAVLVLVTP 469 >gi|238026031|ref|YP_002910262.1| type II secretory pathway, component PulD [Burkholderia glumae BGR1] gi|237875225|gb|ACR27558.1| Type II secretory pathway, component PulD [Burkholderia glumae BGR1] Length = 449 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 19/249 (7%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-----QVTLKVTIAEV 205 V + + + + QS SS+K++ L ++ + +V ++ + EV Sbjct: 184 VGSRAKADAPPTSAAAMVDQSSDTMVFLSSAKEIALLKSVLPQVDTKTGEVAIRAWVYEV 243 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + + GFQ + S G V E + L + + AL+ Sbjct: 244 STENDRTTGFQLAA----SILGGKLGVSLGVGTVDESAN---ALRLHAGFLDAAIAALDS 296 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDYGVVLHFTP 320 + + P L SG+ G SS+ SVT D GV+ P Sbjct: 297 DSRFHVITSPNLRVESGKHGRLNVGQSVPVIDSVTYPNSSAAPLQSVTYQDAGVIFDVQP 356 Query: 321 TVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379 TV I + E+S+ + P+ RK +T++ L G +V+ GL + Sbjct: 357 TV-KDDVIDTDVTVEISDFQRTSTGVNNSPTKNTRKVETSMTLRDGEVVVMGGLSEGKDS 415 Query: 380 QLKEGIPLL 388 + GI L Sbjct: 416 IVTSGIRWL 424 >gi|255595192|ref|XP_002536247.1| conserved hypothetical protein [Ricinus communis] gi|223520311|gb|EEF26137.1| conserved hypothetical protein [Ricinus communis] Length = 316 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 55/102 (53%), Gaps = 3/102 (2%) Query: 326 GRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 ++ +++ EVS V + R A+TT++L + T +LAGL +DD Q+ + Sbjct: 3 DQVSIKVGMEVSNITDQVTTSSGVLAYTIGSRNANTTLQLRNNETQILAGLFRDDEQKTR 62 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 +P L +P++G LF ++ ++ + EI + TP ++ ++ Sbjct: 63 RKVPGLGNLPLIGKLFSSNNEDKRKNEIVLLITPRIMHNLSP 104 >gi|253688457|ref|YP_003017647.1| type II and III secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755035|gb|ACT13111.1| type II and III secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 388 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 88/232 (37%), Gaps = 19/232 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 D+V + + E++ + G Q + + +S + S+ + + Sbjct: 172 ADEVVVSGYVYEIQTNSRDGSGLQLAASLLNSKLNFQIGG-------SDSRGYENFLKIS 224 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---SVTT 309 S ++ + T T++ PTL SG +A F+ G +S G + SV Sbjct: 225 SGSMNALVELFKTDTRFSTVSAPTLRVRSGANAVFSVGNSTPTLGSTSFQGQSAIQSVVY 284 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTI 368 D GV+ +P V I LRI+ E+S N D P+ R+ T + L G I Sbjct: 285 RDAGVIFDVSPAVRLD-AIDLRIRQELSNFTSTQNGVNDSPTLIKREISTDISLSDGDII 343 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 +L GL D G L F + + ++T+I I ++ Sbjct: 344 LLGGLADDKKTASGTGFSWLPS-------FTSQGSSADKTDIVIVLQVRKIR 388 >gi|253990944|ref|YP_003042300.1| type III secretion system EscC protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782394|emb|CAQ85558.1| Putative type III secretion system EscC protein [Photorhabdus asymbiotica] Length = 491 Score = 97.8 bits (242), Expect = 4e-18, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 97/267 (36%), Gaps = 12/267 (4%) Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---NLLNIAGED-QVTLKVTIAEVR 206 V + +RA ++ + + +S +V+ N L + G ++TL IA + Sbjct: 214 VNDGEMLERAYKVKLNEGDKQKLEEAEKTSKVQVIPGTNALLVRGTPGEITLAKRIASMI 273 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALER 265 KQ+ F + ++ ++ F AD S G D F A+ Sbjct: 274 DVKGKQLMFSLKVYDVAADRTEHFGADSSMLNGSTGIYDILTLPYSATKDFLNNFQAMYS 333 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325 R++ L + F G + S + L+ T VL Sbjct: 334 NGLARSVYSTNLLILENHQGHF--GKKDTITVNLVSNKEVESLKIEADNSLYVTGRVLPS 391 Query: 326 GRIGLRIQ--TEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 G + +++ E + N + P + + + TI+L G + Sbjct: 392 GGVQAKLEYIEEHFDDDKSSNQNGVSQPPKISSQSLSSEAFIKPNETIILGGFDNIETLS 451 Query: 381 LKEGIPLLSKIPILGALFRNSRFNREE 407 + G+P+LS IP+LG +F+N++ + + Sbjct: 452 SESGVPVLSSIPLLGEIFKNTKLTKRK 478 >gi|330950830|gb|EGH51090.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae Cit 7] Length = 314 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 13/198 (6%) Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---R 327 + P++ + Q A ++S ++ G L TP L + Sbjct: 1 MIGNPSILTLENQPAVIDFSRTEY--LTATSERVANIEPITAGTSLQVTPRSLDHDGKPQ 58 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L + E + I PS R T + G++V+ G + +PL Sbjct: 59 VQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPL 118 Query: 388 LSKIPILGA-LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446 L IP +G LF++ + E TP L+ D P + + + Sbjct: 119 LGDIPYIGKLLFQSRSRELSQRERLFILTPRLI-----GDQVNPARYVQNGNPHDVD--D 171 Query: 447 RVNKIYGPKEASEVEGQN 464 ++ +I ++ E+ + Sbjct: 172 QMKRIKERRDGGELPTRG 189 >gi|167571699|ref|ZP_02364573.1| Type II secretory pathway, component PulD [Burkholderia oklahomensis C6786] Length = 439 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 55/352 (15%), Positives = 119/352 (33%), Gaps = 38/352 (10%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + + K G A ++ ++ D+ + + LR I + I Sbjct: 104 QVVTKNGVDYVTKKPGAA---------REKVDQDVFVYKPRYRRVDYLRALI-EPMIGTR 153 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY---ANSSSKKVMNLLNIAGEDQV 196 + L V AV++ S + + +L+ + D+V Sbjct: 154 SMP----LTAPVSMPMQPAGAVQVPGESTSPANDAPAMPIEMGVQARGDDLVIVGSHDEV 209 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--------EGGDFSVK 248 L + ++ + + ++ S + A + +S + + Sbjct: 210 ALLRKVVPELDTAPSEVVVRGWVYEVANTDSTNTAWSIAVRMLSGQLRVSSGDTSSDTSA 269 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTG 303 + + AL + + ++ P + +SG+ G Q ++ S+ T Sbjct: 270 VRFTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTP 329 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVEL 362 S+T D G++ P V+ I +++ E+S+ V D P+ R+ T + Sbjct: 330 VQSITYQDAGLIFDVEPIVMRE-VIEVKVHEEISDFVATKTGVDTSPTKNTRQLQTVTRM 388 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 G IVL GL++D + G L + +++ TE+ + Sbjct: 389 KDGEVIVLGGLIQDRNATARSGYAWLP------SFLDGRSSSKQRTEVLLVL 434 >gi|148826860|ref|YP_001291613.1| putative phage-like secreted protein [Haemophilus influenzae PittGG] gi|148718102|gb|ABQ99229.1| putative phage-related secreted protein [Haemophilus influenzae PittGG] Length = 377 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 54/300 (18%), Positives = 107/300 (35%), Gaps = 25/300 (8%) Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 +AH+E ++ + +S + + DT L ++ + + A + ++ S Sbjct: 93 LAHIESQPKKVMKNSFVYSPIYRDTEYLSQFLKDEEGAVSASGDKLVYYGKTEDIARVKS 152 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 K V ++ +V + + EV+ + + GS + G + Sbjct: 153 VLKGV----DVP-SREVVVTGYVFEVQTEEKE---------GSGINLLAKLLSGKLGINI 198 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---- 295 ++ ++ + + ++ + ++ PTL SG +F+ G Sbjct: 199 GVKQNYENFITVNTGNLDAMIELFRTDSRFHVVSSPTLRVKSGSKGNFSVGSDVPVLGAV 258 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVR 354 S+ GV+ PT+ I L+I ++S V P+ R Sbjct: 259 TYDRDGRAVQSIEYRSSGVIFDIQPTI-KNNAIDLKINQQLSNFVKTDTGVNQSPTLIKR 317 Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 T V L SG +VL GL ++ I + + G L K G L + +T+I I Sbjct: 318 DIVTDVTLKSGDIVVLGGLAENKITEGETGFSFLPK----GIL-SGRSKSNSKTDIVILL 372 >gi|190570911|ref|YP_001975269.1| type II secretion system protein, putative [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357183|emb|CAQ54599.1| type II secretion system protein, putative [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 488 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 88/265 (33%), Gaps = 52/265 (19%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ +N + QV ++ I EV D G + + + + Sbjct: 235 AVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGINLNDLHNKTKSITN---------- 284 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-- 297 D S+ ++ E ++ L++ ++ P + AI+ Q A + H+Y T Sbjct: 285 ---QDSSITSLVMNSDLENLVKTLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSD 341 Query: 298 VSSSTGA------TSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN------ 344 + TG T + + GVVL P++ I + I +S Sbjct: 342 IQKDTGNSNHALITKMNSTPIGVVLIIHPSINIDTNEIFMDIHPTLSRINNYTKDPNIEY 401 Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 D+P R+ +T+++ SG +V+ GL++ Sbjct: 402 VAQQNKMKLNSDIPIIETREMHSTLKIKSGEVMVIGGLIEHRKDNQ-------------- 447 Query: 396 ALFRNSRFNREET-EIFIAATPFLV 419 L +T E I +V Sbjct: 448 NLLHQKSKKLAKTVETVIFLKATIV 472 >gi|301165542|emb|CBW25113.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ] Length = 493 Score = 96.6 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 65/402 (16%), Positives = 142/402 (35%), Gaps = 64/402 (15%) Query: 46 KGKKISIGLNKVII---LQVPVDVQDVLV---SDPTKADVVVHSPRTMYLFGKNVGQANV 99 +G +I I NKV + + VP D+ V+V P +V SP+T + +N+ Sbjct: 117 EGLEIGIKGNKVYVGGEIVVPSDIGRVIVVLGGYPDVVQLVELSPQTQRVIARNMQ---- 172 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 + + + D +RV + +L G+V + D R Sbjct: 173 ------------------------KEIQKSNMPDVTVRV--ANGLFMLEGVVSSDVDKTR 206 Query: 160 AVELSETFLSQ-----SGRNQYANSSSKKVM-NLLNI-------AGEDQVTLKVTIAEVR 206 A +++ ++ + R + ++ K ++ N +++ + + E+ Sbjct: 207 AEQIAAVYVPDMIQNLARRTEAVKAAEKDIIQNFISVNAKKKPAPIPKMIKISAQFVELT 266 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 +D K GF+ G + + G S + + F L + + A Sbjct: 267 KDYNKIFGFKWEPVLGGGGGTINIGKGADGGVTSSSSGTLAGTISNLF---PKLASAKSA 323 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 R + + ++ + + + T T G L TPT+L Sbjct: 324 GYARVIQSGVIITKDKIASKIVKRSEKPFAIGTGEFVRTEKAT--AGFDLSITPTILPQE 381 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 ++ L + VS N GD P T + + S + V+ G++ + + P Sbjct: 382 KVDLSMGLTVS-----ANVGDPPETTSNTIQTALVVKSKESAVVGGVVVNKSSTDFDRNP 436 Query: 387 --LLSKIPILGALF---RNSRFNREETEIFIAATPFLVKPVA 423 + ++ LF ++ + +++ + TP +++ + Sbjct: 437 PGGVDEVEDGSKLFSFVKSKAYLTNKSQFVVFVTPEIIESAS 478 Score = 45.8 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 4/157 (2%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKAD-VVVHSPRTMYLFGKNVGQANVILIGHDGK 107 ++ +G++ V L V V + T + V++ R + G GQ +V++ G Sbjct: 30 EVVLGIDHVEKLDF-APSTKVQVGNDTILNHVIIPQKREITFKGLKPGQTSVMVRNTVGD 88 Query: 108 QMLNLDILIER-DIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + I D + + L+ F+ D + + + + V + G + D R + + Sbjct: 89 IKAKFLVNITATDQSKVVQELKEFLGDVEGLEIGIKGNKVYVGGEIVVPSDIGRVIVVLG 148 Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 + + + + + + + + VT+ Sbjct: 149 GYPDVVQLVELSPQTQRVIARNMQKEIQKSNMPDVTV 185 >gi|113955379|ref|YP_731905.1| general secretion pathway protein D [Synechococcus sp. CC9311] gi|113882730|gb|ABI47688.1| possible general (type II) secretion pathway protein D precursor [Synechococcus sp. CC9311] Length = 732 Score = 96.3 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 19/193 (9%) Query: 261 HALERATAIRTLAEPTLTAISGQSA---SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 AL+ AT R+ A + + Q S ++G + G +T Sbjct: 545 SALQTATIGRSKANESFVTVGTQETVNYSVSAGQNGAPNSCQPILGTAGLTF-----GAR 599 Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADT-TVELPSGGTIVLAGL 373 + + G + + ++ N G VR+ DT ++ + G T++L G+ Sbjct: 600 VS-KIDDNGFVSFSLSPTIAAVTGTQNVEGCGPRSILSVRRLDTGSLRVRDGQTLILTGV 658 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL------ 427 + D Q P+L +P++G FR S +R + E+ + TP ++ + Sbjct: 659 ISDRDAQQVRKWPILGDLPLIGQFFRESTRDRAKRELVVLVTPKIISDDQGGNYGYGYQP 718 Query: 428 SRPDDHYSVEDDA 440 S P + +DA Sbjct: 719 SLPAARQLMSNDA 731 >gi|187736127|ref|YP_001878239.1| type II and III secretion system protein [Akkermansia muciniphila ATCC BAA-835] gi|187426179|gb|ACD05458.1| type II and III secretion system protein [Akkermansia muciniphila ATCC BAA-835] Length = 833 Score = 96.3 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 63/386 (16%), Positives = 111/386 (28%), Gaps = 121/386 (31%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------------GSSS 224 ++++ QV + T EV + L+++GF + + Sbjct: 446 EELVAARTAEQPLQVVVSATFLEVNQTDLEELGFNWIVNLNLDPTKWFMGGAGTDKNDYN 505 Query: 225 GPSKSFAADFGGKFVSEG----------------------------------------GD 244 AA+ G G Sbjct: 506 NSVLDSAANVAGAVAPAGVVGGLRSGNQVFTEDSIDSMIERGTSARSSDATYVPGGAPSI 565 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT------V 298 +++G+ ++ L + + P++ G+ A+F SG + +Y T V Sbjct: 566 VTLRGMWSHADITMIMRGLSQKKGTDIMQHPSVIVRPGEKATFFSGRELIYPTEYDPPEV 625 Query: 299 SSSTGA------------------------TSVTTHDYG----------------VVLHF 318 +STG ++ T G V + Sbjct: 626 PNSTGNNNDWGDNDNNGGGIPVMPMTPAHPSAFETRQLGTIFNVEVTGISDDKSIVEMTV 685 Query: 319 TPTVLS-PGRIG-------------LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 P ++ G I + EV N P + R+ V + + Sbjct: 686 VPEIVDFDGFINYGTSLFVPMVSQEKDAKEEVVMVKTSDNFILQPVFSTRRLTAPVRIAT 745 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 G T+V+ L K ++ IP+L IP +G LFR+ + I I +V P Sbjct: 746 GNTLVIGALKKSTSITYEDKIPVLGDIPWVGRLFRSKGSKEQRKAIIIMVKAEVVDPGGK 805 Query: 425 R----DLSRPDDHYSVEDDAKAFFFN 446 + D S PDD D + N Sbjct: 806 KLYTPDTSIPDDEVPAGDASLPALSN 831 >gi|254468950|ref|ZP_05082356.1| Bacterial type II and III secretion system protein [beta proteobacterium KB13] gi|207087760|gb|EDZ65043.1| Bacterial type II and III secretion system protein [beta proteobacterium KB13] Length = 719 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 90/254 (35%), Gaps = 31/254 (12%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------------KFVSE 241 Q ++ I EV D ++ + + S+ S++ G +E Sbjct: 455 KQAMIETFILEVNSDWKNELESRFTSNTMSTNSSEAAGDGGSGLYSFTAGLLDFASATAE 514 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----- 296 GG + + R +++ +E + + ++ P + G+ + Sbjct: 515 GGITASTRLGSRNQISALVNMIETNSLGKKISNPVILVRDGEEGVVDKTRTFRAQRSTTT 574 Query: 297 --TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRV 353 + +++T + +D + L TP + + I + + +A + Sbjct: 575 TNSATTNTSNNQIDEYDAPLKLTVTPNINKHNDV---IDLDFNFVEETYDSASPTAASTS 631 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI-------PILGALFRNSRFNRE 406 T +++ G +++AGL + +G+P +SK+ P++ L + Sbjct: 632 NNITTKLKIEPGEVVMMAGLFQQTQNNTTQGLPFVSKLGFSKLLSPLVALLGGGEVRRTD 691 Query: 407 E-TEIFIAATPFLV 419 TE+ + P ++ Sbjct: 692 TGTELLVFINPTVI 705 >gi|217077653|ref|YP_002335371.1| general secretion pathway protein D, putative [Thermosipho africanus TCF52B] gi|217037508|gb|ACJ76030.1| general secretion pathway protein D, putative [Thermosipho africanus TCF52B] Length = 368 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 81/222 (36%), Gaps = 23/222 (10%) Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 ++V I E+ K+ G + + + S+ G+ + +F Sbjct: 164 IQVKIIEIDESDFKKFGVSWN---NEENNTTSY----------NNGNLQLSLNPLNVNFN 210 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-TSVTTHDYGVVL 316 ++ L + + LAE TL S ++ T Y TV + G + + Sbjct: 211 IIMDTLISSGNAKVLAEGTLKLKSNSTSQITG-----YTTVGFTIGKDNTYVEKKINTQI 265 Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 + V + L +++ V + + +T +++ +AGL D Sbjct: 266 IISGHVFTD-HANLTLKSIVESFIQNSSTFTPVGAS---VETNLDIKYEQPYYIAGLSFD 321 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + + GIP L IPI+G LF+NS + + I I L Sbjct: 322 SVTKQDGGIPGLKDIPIIGNLFKNSTYTSRKKNIVIFIKARL 363 >gi|297519324|ref|ZP_06937710.1| general secretion pathway protein D precursor [Escherichia coli OP50] Length = 136 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 7/128 (5%) Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSV 307 + + ++ A++ ++ L+ P++T + Q A F G T S+ S +V Sbjct: 11 KGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTV 70 Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 G++L TP + + + I+ EVS+ + + + RK TTV G Sbjct: 71 ERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGEL 128 Query: 368 IVLAGLLK 375 IVL GL+ Sbjct: 129 IVLGGLMD 136 >gi|28901194|ref|NP_800849.1| putative type III secretion system EscC protein [Vibrio parahaemolyticus RIMD 2210633] gi|260362753|ref|ZP_05775622.1| protein VcsC2 [Vibrio parahaemolyticus K5030] gi|260880041|ref|ZP_05892396.1| protein VcsC2 [Vibrio parahaemolyticus AN-5034] gi|260895158|ref|ZP_05903654.1| protein VcsC2 [Vibrio parahaemolyticus Peru-466] gi|28809707|dbj|BAC62682.1| putative type III secretion system EscC protein [Vibrio parahaemolyticus RIMD 2210633] gi|308085690|gb|EFO35385.1| protein VcsC2 [Vibrio parahaemolyticus Peru-466] gi|308092233|gb|EFO41928.1| protein VcsC2 [Vibrio parahaemolyticus AN-5034] gi|308112426|gb|EFO49966.1| protein VcsC2 [Vibrio parahaemolyticus K5030] Length = 487 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 90/224 (40%), Gaps = 5/224 (2%) Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF 245 LL +++V L IA + +Q+ F + S+ ++ D G + G D Sbjct: 253 LLIRGTQEEVKLAKRIAALIDVKRRQLLFSLKVYDISAERKENLGIDSGWLNGNRGIYDI 312 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 V + F AL R++ E L A+ Q + F G + S Sbjct: 313 VVPPFTETKDFVKNFQALYSNGIARSVYETNLVALENQQSQF--GKKQTATLTLISDKQV 370 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQ-TEVSEP-VIGVNAGDMPSYRVRKADTTVELP 363 + L+ T +L G++ RIQ E S ++ P + ++ V + Sbjct: 371 KTEKIEADNSLYVTGRLLPSGQVQARIQYVEESLDEDDNEDSNRPPRVSSQSLNSEVYIQ 430 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 T++L G QQ + G+P++S IP+LG LF+ + ++ + Sbjct: 431 PNQTVILGGFDNTVTQQQESGVPIISSIPLLGELFKYTSESKHK 474 >gi|33152500|ref|NP_873853.1| putative phage-related secreted protein [Haemophilus ducreyi 35000HP] gi|33148723|gb|AAP96242.1| putative phage-related secreted protein [Haemophilus ducreyi 35000HP] Length = 374 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 60/304 (19%), Positives = 104/304 (34%), Gaps = 51/304 (16%) Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + RD+A+L L+ + +V D +V +G I + Sbjct: 112 VHRDVAYLAEFLQA-----DGQVFAHGDKLVFYGTPAEISRA------------------ 148 Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235 K V+ L+ ++ V + + EV+ + GS + Sbjct: 149 ------KSVLTSLDTVSKE-VVVTGYVFEVQTQEKE---------GSGINLFAKLLSGKL 192 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G + F L+ + + ++ + + ++ PTL SG +F+ G Sbjct: 193 GINIGIKQSFENFITLNMGNLDAMIELFKSDSRFHVVSSPTLRVKSGSKGNFSVGSDVPV 252 Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPS 350 K S+ GV+ TPTV I LRIQ ++S V + P+ Sbjct: 253 LGSVKYDKEGRAVQSIEYRTSGVIFDITPTVKRD-AIDLRIQQQLSNFVKTDTGVNNSPT 311 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R T + + SG IVL GL ++ + G L KI E+T+I Sbjct: 312 LIKRDIVTDITVKSGEVIVLGGLAENKQTEGNTGFSFLPKI------LTGKSNRSEKTDI 365 Query: 411 FIAA 414 + Sbjct: 366 IVLL 369 >gi|254362930|ref|ZP_04978997.1| PulD family bacteriophage secretion protein [Mannheimia haemolytica PHL213] gi|153094576|gb|EDN75393.1| PulD family bacteriophage secretion protein [Mannheimia haemolytica PHL213] Length = 377 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 58/311 (18%), Positives = 97/311 (31%), Gaps = 26/311 (8%) Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS-----------QRAVELSETFLSQS 171 E ++R+ ++ NI V V + G + Q R V+ +FL Sbjct: 69 FEQFIQRYFSNMNISVSEKKGVVYI-GHIEPKQPKVIKRSFVYSPIHRDVDYLASFLKDG 127 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVT-----LKVTIAEVRRDILKQIGFQHSITGSSSGP 226 +S K++ +V + EV GS Sbjct: 128 TEGNQVFASGDKLVYYGTSEDIARVKSILKSIDTKSREVVVTGYVFEVQNIEKEGSGINL 187 Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 + G V + ++ + + + R ++ PTL SG + Sbjct: 188 LAKLLSGKLGISVGYKQSYENFITVNAGNLDAMFELFRTDQRFRVVSSPTLRVKSGSRGN 247 Query: 287 FTSGGQHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 F+ G T S+ GV+ PT+ I L+IQ + Sbjct: 248 FSVGSDVPVLSNVTYQDGRPIQSIEYRSSGVIFDIQPTI-KDKAIDLKIQQLSNFIKTDT 306 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 + P+ R T V + SG IVL GL ++ I + LL K G L Sbjct: 307 GVNNSPTLVKRDLVTDVTVKSGDVIVLGGLAENKISNGETSFSLLPK----GWL-SGKSN 361 Query: 404 NREETEIFIAA 414 +T+I + Sbjct: 362 ENTKTDIIVLL 372 >gi|149195497|ref|ZP_01872574.1| type II secretion pathway protein XcpQ [Caminibacter mediatlanticus TB-2] gi|149134357|gb|EDM22856.1| type II secretion pathway protein XcpQ [Caminibacter mediatlanticus TB-2] Length = 336 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 77/213 (36%), Gaps = 19/213 (8%) Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 I V + +++G + + D ++ + +F++ ++ Sbjct: 104 ITAVNNNKARKLGVKLDFNNPFKNILLNIVTDTA----------TISTLPSGVNFQSFIN 153 Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGV 314 L +T+ +PTL I + S + S + T + D G+ Sbjct: 154 FLNSKNIAQTIDKPTLRLIDSHNYVLESVHSIPFTETSVTIDKNGNPVTKTDLKYKDIGL 213 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL-PSGGTIVLAGL 373 ++ +S I + V V + + P + +T ++L + ++AGL Sbjct: 214 KIYIKNVFISKNSIDFDLDIYVQNIV-SILQNNQPVVDTKHFNTHIQLTKKNCSYLIAGL 272 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 + +P+L +P +G LFR+S + + Sbjct: 273 RSVSTISQNKKVPVLGDLPFVGLLFRSSDKSVQ 305 >gi|153836074|ref|ZP_01988741.1| VcsC2 [Vibrio parahaemolyticus AQ3810] gi|149750828|gb|EDM61573.1| VcsC2 [Vibrio parahaemolyticus AQ3810] Length = 487 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 5/224 (2%) Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF 245 LL +++V L IA + +Q+ F + S+ ++ D G + G D Sbjct: 253 LLIRGTQEEVKLAKRIAALIDVKRRQLLFSLKVYDISAERKENLGIDSGWLNGNRGIYDI 312 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 V + F AL R++ E L A+ Q + F G + S Sbjct: 313 VVPPFTETKDFVKNFQALYSNGIARSVYETNLVALENQQSQF--GKKQTATLTLISDKQV 370 Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 + L+ T +L G++ RIQ E + ++ P + ++ V + Sbjct: 371 KTEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDEDDNEDSNRPPRVSSQSLNSEVYIQ 430 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 T++L G QQ + G+P++S IP+LG LF+ + ++ + Sbjct: 431 PNQTVILGGFDNTVTQQQESGVPIISSIPLLGELFKYTSESKHK 474 >gi|315499170|ref|YP_004087974.1| type II and iii secretion system protein [Asticcacaulis excentricus CB 48] gi|315417182|gb|ADU13823.1| type II and III secretion system protein [Asticcacaulis excentricus CB 48] Length = 543 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 87/252 (34%), Gaps = 24/252 (9%) Query: 192 GEDQVTLKVTIA--------EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 DQV++ V I V ++L + Q+ + G Sbjct: 245 TPDQVSVDVAIILSQNAQRDSVGVNLLDGLQLQYGRQDQQNHSGG-----------DTGV 293 Query: 244 DFSVKGVLDRFSFETVLHALERATAI-RTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 ++ + L+ R + +A P LTA G+ + F G K Sbjct: 294 TRTITDTITLPQLTYNLNLFNRFGQYYQVVARPMLTAYRGEPSDFFVGRS--TKVAVKGV 351 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTV 360 + + D G + TP ++ R LRI+ S + + TTV Sbjct: 352 NFSQLENIDIGTQVKVTPVEITSDRTRLRIEVTRSFLSGEPAGNFNEALNTWRQTVSTTV 411 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 E+ G T++L+GL + PL+ P++G+ F N+ + + TP + Sbjct: 412 EVRFGTTLILSGLSESVRDSSVTKTPLIGDAPLIGSGFNRRVTNQRRDAVLVLVTPSPAR 471 Query: 421 PVAMRDLSRPDD 432 + + SR D Sbjct: 472 VMESQGWSRQAD 483 >gi|330951303|gb|EGH51563.1| type II and III secretion system protein:NolW-like protein [Pseudomonas syringae Cit 7] Length = 584 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 23/170 (13%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSF 230 + Q +++++ L+I QV ++ I E D KQ+G + + ++SG ++ Sbjct: 417 QTQERLDELRRIVSQLDIP-VRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTY 475 Query: 231 AADFGGKFVSEGGD-------------------FSVKGVLDRFSFETVLHALERATAIRT 271 D G G + V + + L A+E+ Sbjct: 476 GLDNNGDEAGNTGSSTTSNVPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEI 535 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321 +++P + ++A G + Y+ SSS+GAT+V+ + + L TP Sbjct: 536 VSQPKVVTSDKETAKILKGTEIPYQE-SSSSGATTVSFKEASLSLEVTPQ 584 >gi|167564548|ref|ZP_02357464.1| Type II secretory pathway, component PulD [Burkholderia oklahomensis EO147] Length = 400 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 54/326 (16%), Positives = 113/326 (34%), Gaps = 32/326 (9%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 V + + K G A ++ ++ D+ + + LR I + I Sbjct: 86 QVVTKNGVDYVTKKPGAA---------REKVDRDVFVYKPRYRRVDYLRALI-EPMIGAR 135 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY---ANSSSKKVMNLLNIAGEDQV 196 + L V AV++ +S + + +L+ + D+V Sbjct: 136 SMP----LTAPVSMPMQPAGAVQVPGEPISPASDAPAMPIETGVQARGDDLVIVGSHDEV 191 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--------EGGDFSVK 248 L + ++ + + ++ S + A + +S + + Sbjct: 192 ALLRKVVPELDTAPSEVVVRGWVYEVANTDSTNTAWSIAVRMLSGQLRVSSGDTSSDTSA 251 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTG 303 + + AL + + ++ P + +SG+ G Q ++ S+ T Sbjct: 252 VRFTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTP 311 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVEL 362 S+T D G++ PTV+ I +++ E+S+ V D P+ R+ T + Sbjct: 312 VQSITYQDAGLIFDVEPTVMRE-VIEVKVHEEISDFVATKTGVDTSPTKNTRQLQTVTRM 370 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLL 388 G IVL GL++D + G L Sbjct: 371 KDGEVIVLGGLIQDRNATARSGYAWL 396 >gi|281355619|ref|ZP_06242113.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281318499|gb|EFB02519.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 540 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 96/276 (34%), Gaps = 43/276 (15%) Query: 180 SSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---------K 228 S K + N+L ++ + + E+ + +IG ++ G Sbjct: 215 SWKHISNMLAQYDRPIPEIRFRYKVVEIFAENDDKIGLDFQSWKNNDGADFFSAGGRFRS 274 Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 ++A+ FG + G + + + L R L L A + + S Sbjct: 275 NWASTFGAGVNNSGSSKTEFFNFNPKWNSKYIDFLTSRGKARVLTSGVLNAKNRTTTSIN 334 Query: 289 SGGQHLYKTVSSS----------------------------TGATSVTTHDYGV--VLHF 318 G Y VS G +T G L Sbjct: 335 VGSGLFYDDVSQKIEPGNTGRLPAPFAGEPDVPDAGKLEIRKGQQQITKVGEGFRFSLDL 394 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS-GGTIVLAGLLKDD 377 +++ L++ E S +IG ++ P + +T V++ + G V+ GL K D Sbjct: 395 VEPIVTANSTTLKLHAE-SVSLIGWDSSGEPRLNKSEIETEVQIGNSGKNFVIGGLRKFD 453 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 I + G+PLL +P+LG LF + ++++I I Sbjct: 454 IVRGVAGVPLLKDLPLLGWLFSTESESTKKSQIVIL 489 >gi|213019427|ref|ZP_03335233.1| type II secretion system protein, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994849|gb|EEB55491.1| type II secretion system protein, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 448 Score = 94.3 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 88/265 (33%), Gaps = 52/265 (19%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ +N + QV ++ I EV D G + + + + Sbjct: 195 AVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGINLNDLHNETKSITN---------- 244 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-- 297 D S+ ++ E ++ L++ ++ P + AI+ Q A + H+Y T Sbjct: 245 ---QDSSITSLVMNSDLENLVKTLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSD 301 Query: 298 VSSSTGA------TSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN------ 344 + TG T + + GVVL P++ I + I +S Sbjct: 302 IQKDTGNSNHALITKMNSTPIGVVLIIHPSINIDTNEIFMDIHPTLSRINNYTKDPNIEY 361 Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 D+P R+ +T+++ SG +V+ GL++ Sbjct: 362 VAQQNKMKLNSDIPIIETREMHSTLKIKSGEVMVIGGLIEHRKDNQ-------------- 407 Query: 396 ALFRNSRFNREET-EIFIAATPFLV 419 L +T E I +V Sbjct: 408 NLLHQKSKKLAKTVETVIFLKATIV 432 >gi|320107685|ref|YP_004183275.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] gi|319926206|gb|ADV83281.1| type II and III secretion system protein [Terriglobus saanensis SP1PR4] Length = 617 Score = 94.0 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 61/376 (16%), Positives = 133/376 (35%), Gaps = 75/376 (19%) Query: 113 DILIERDIAHLEMTLRRFIAD----SNIRVEMVSDTVVLHGMVRTIQDSQRA-VELSETF 167 IL+ D L R + + + E ++D + +VR I D ++A V+ Sbjct: 230 TILVAEDTPGNRERLERQMEEMVSLPGLTTEQLND---IGNIVRNIFDVKQATVQPHAGT 286 Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 L + N+ ++ + +L++ G +V L++ + V ++ + G + ++ P+ Sbjct: 287 LVLRASAEKLNAINRTLEDLID--GGSEVLLRLRLYSVSKNKSQDTGLTPPQSLTAFSPA 344 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR----------------- 270 + ++ + + S + AL + Sbjct: 345 GAASSLISANQTLADQIVASGALGTNPSQIAIALALIASGVSSNLLTGSFLKVGGGLSTV 404 Query: 271 TLAEPT--------------------LTAISGQSASFTSGGQHLYKTVSSSTG------- 303 L+ L ++ +F SG + T + S+G Sbjct: 405 ILSTANSPTLNLTLSSSDSRSLDDVQLRLSDRETGTFRSGSRFPIVTSTYSSGISTAAGS 464 Query: 304 -------------------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 + D G+ L TP + G + + ++ ++ E + G Sbjct: 465 STAAALLSQFLGSSASSVVVPQIQYEDLGLTLKATPHMQRSGDVSVHLELKI-EALSGQA 523 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 D+P + + + L +G T ++ GLL + GIP LS +P ++ ++ N Sbjct: 524 QNDIPILANQLVTSDLTLRAGETAMIMGLLTRSQSKAISGIPGLSDLPGFQSI-TDNTGN 582 Query: 405 REETEIFIAATPFLVK 420 + E E+ + TP +V+ Sbjct: 583 KMEDEMVLLLTPVVVR 598 >gi|332091472|gb|EGI96557.1| general secretion pathway protein D domain protein [Shigella boydii 3594-74] Length = 93 Score = 93.2 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 +L TP + + + I+ EVS+ + + + RK TTV G IVL GL+ Sbjct: 1 MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 D + +PLL IP++G LF+++ +E Sbjct: 59 DDQAGESVAKVPLLGDIPLIGNLFKSTADKKEN 91 >gi|284006612|emb|CBA71873.1| phage secreted protein [Arsenophonus nasoniae] Length = 334 Score = 93.2 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 10/203 (4%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 GS + G + ++ ++ + + ++ + ++ PTL Sbjct: 138 GSGINLLAKLLSGKLGINIGIKQNYENFITINTGNLDAMIELFRTDSRFHVVSSPTLRVK 197 Query: 281 SGQSASFTSGGQHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 SG +F+ G T SV GV+ PT+ S I L+IQ ++S Sbjct: 198 SGSKGNFSVGSDVPVLSSVTYQDGRPVQSVEYRSSGVIFDIQPTIKSQ-AIDLKIQQQLS 256 Query: 338 EPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 V P+ R T V + SG IVL GL ++ +++ G L K G Sbjct: 257 NFVKTDTGVNQSPTLIKRDIVTDVTVKSGDVIVLGGLAENKLEEGGTGFSFLPK----GF 312 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 L +R +T+I + ++ Sbjct: 313 L-SGKSTSRTKTDIVVLLQVKVI 334 >gi|257465733|ref|ZP_05630104.1| putative phage-related secreted protein [Actinobacillus minor 202] gi|257451393|gb|EEV25436.1| putative phage-related secreted protein [Actinobacillus minor 202] Length = 375 Score = 93.2 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 10/169 (5%) Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGATS 306 ++ + + + + ++ P L SG +F+ G T + Sbjct: 208 TVNAGNLDAIFELFRTDGRFQVVSSPILRVKSGSKGNFSVGSDVPILSNVTYQDGKPIQA 267 Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSG 365 + GV+ PT+ I L+IQ ++S V P+ R T V + SG Sbjct: 268 IEYRSSGVIFDIQPTI-KNQSIDLKIQQQLSNFVKTDTGVNQSPTLIKRDLVTDVSVKSG 326 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 IVL GL ++ + + + G L K G L + +T+I + Sbjct: 327 DVIVLGGLAENKLTEGETGFSFLPK----GWL-TGKSKSSTKTDIIVLL 370 >gi|87306498|ref|ZP_01088645.1| general secretory pathway protein D-like [Blastopirellula marina DSM 3645] gi|87290677|gb|EAQ82564.1| general secretory pathway protein D-like [Blastopirellula marina DSM 3645] Length = 1313 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 109/331 (32%), Gaps = 85/331 (25%) Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------T 220 + Q + ++ L + QVT++V + + ++IG + Sbjct: 968 QTQEVHDKIADLLEQLRRLQDLQVTIEVRFITLNDNFFERIGIDFDLDIKDNTSGIGTNR 1027 Query: 221 GSSSGPSKSFAADFGGKFVSE---------------------------GGDFSVKGVLDR 253 GS PS + D G S+ GG F + D Sbjct: 1028 GSDGSPSITIGLDQTGNPTSDLDLSFAQNSFGNTVPAIGGLGAAAGSIGGSFGFAMLSDI 1087 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------STGATS 306 +F V+ A + + P +T +GQ+A T Q + T + + Sbjct: 1088 EAF-FVMQAAQSDLRSNVMQAPKVTLFNGQTAFVTDSTQRPFVTSVTPVVGDFAAAQQPV 1146 Query: 307 VTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPV------------------------- 340 + + G L V + R + L + S+ Sbjct: 1147 IVVLNEGTSLTVQAVVSADRRFVRLTLVPMFSQIGEVDTFTFEGTSSSRADSTVEDPDAA 1206 Query: 341 ------------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + P + + TTV +P GGT++L G+ + ++ + G+P++ Sbjct: 1207 DGGTTTDNEEEQMTGTTVQQPEFSIITVTTTVSVPDGGTVLLGGIKRLSEERREAGVPIV 1266 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 SK+P + LFRN R + + TP ++ Sbjct: 1267 SKLPYINRLFRNVGIGRSTQSLMMMVTPRII 1297 >gi|71901990|ref|ZP_00684038.1| general secretory pathway protein D precursor [Xylella fastidiosa Ann-1] gi|71728245|gb|EAO30428.1| general secretory pathway protein D precursor [Xylella fastidiosa Ann-1] Length = 106 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +A R+ T + SG TI+LAGL+ + + G+P LSK+PI+G LF Sbjct: 2 SAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQ 61 Query: 404 NREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFN 446 N EI + TP +V+ P R+L D YS + +A Sbjct: 62 NNNRREIIVLLTPEIVRNPQEARNL---TDEYSQKFNAMEPLPG 102 >gi|331646883|ref|ZP_08347982.1| outer membrane lipoprotein BfpB (Bundle-forming pilus B) [Escherichia coli M605] gi|331044200|gb|EGI16331.1| outer membrane lipoprotein BfpB (Bundle-forming pilus B) [Escherichia coli M605] Length = 563 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 96/260 (36%), Gaps = 29/260 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKSFAADFGGK 237 + + +N E QVT+ V + V + S G G S GG Sbjct: 304 ENYIKKINNELEQQVTINVAVYSVEVTDTSNLALSLSGVLKQRGHELGALSSSTFAVGG- 362 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + F+ G + E +L AL++A + + ++T +SGQ GG Y + Sbjct: 363 LPTLTAYFNGDGSENN---EALLSALDKAGKVSIVTSASVTTMSGQPTPLQVGGNRTYVS 419 Query: 298 VSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--- 347 + + S ++ G ++ P VL G++ L+ +S N D Sbjct: 420 QIGTIMSSVSTQSSVSTSSISTGFSMNILPRVLDNGQVMLQYGINISSLAGTHNGFDEVT 479 Query: 348 -------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +P+ + R + L +G T+VLAG + + GI P L Sbjct: 480 AAGTTIQLPNIQQRSFIQSSLLQNGNTLVLAGYEQQRNETSDSGI---GD-PSFKLLGGA 535 Query: 401 SRFNREETEIFIAATPFLVK 420 + +T I I TP +++ Sbjct: 536 RAGSHAKTLIVICITPRVLQ 555 >gi|289628765|ref|ZP_06461719.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 578 Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ + + N A QV V + E Q+ + +S + Sbjct: 322 SNVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPG 381 Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +S G++D + ++ A+ I + P++T ++ Q A G Sbjct: 382 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 441 Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339 Y + SV T G + P ++ + L + +S Sbjct: 442 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 501 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ +P+Y + V+L SG T++L+G +++ + I P L Sbjct: 502 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 557 Query: 400 NSRFNREETEIFIAATPFL 418 + ++ + + TP + Sbjct: 558 GRKRTSSKSILVVLITPIV 576 >gi|330870423|gb|EGH05132.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 578 Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ + + N A QV V + E Q+ + +S + Sbjct: 322 SNVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPG 381 Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +S G++D + ++ A+ I + P++T ++ Q A G Sbjct: 382 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 441 Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339 Y + SV T G + P ++ + L + +S Sbjct: 442 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 501 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ +P+Y + V+L SG T++L+G +++ + I P L Sbjct: 502 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 557 Query: 400 NSRFNREETEIFIAATPFL 418 + ++ + + TP + Sbjct: 558 GRKRTSSKSILVVLITPIV 576 >gi|68637854|emb|CAI36059.1| type IV pilus protein [Pseudomonas syringae pv. phaseolicola] Length = 578 Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ + + N A QV V + E Q+ + +S + Sbjct: 322 SNVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPG 381 Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +S G++D + ++ A+ I + P++T ++ Q A G Sbjct: 382 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 441 Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339 Y + SV T G + P ++ + L + +S Sbjct: 442 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLIDDDEMLLMVSINMSSKPTFEPF 501 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ +P+Y + V+L SG T++L+G +++ + I P L Sbjct: 502 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 557 Query: 400 NSRFNREETEIFIAATPFL 418 + ++ + + TP + Sbjct: 558 GRKRTSSKSVLVVLITPIV 576 >gi|78045321|ref|YP_361571.1| putative PilN-like type II and III secretion system protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78033825|emb|CAJ19824.1| putative PilN-like Bacterial type II and III secretion system protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 578 Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 85/249 (34%), Gaps = 19/249 (7%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + N QVTL + + + ++G + S F F + Sbjct: 326 LERENTTLTKQVTLHAKVLSLTLNDANEVGVNWDVVYRSLSRQFEFTTPFQPASSAGTLG 385 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-------- 296 SV ++ AL + T+ P+L ++ + A Q Y Sbjct: 386 ASVINTGKFAGTNVIVSALSTLGTVNTITSPSLKTLNLRPAPIQIARQIGYIQSAQISQT 445 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPV------IGVNAGDMP 349 + + G + G + P +L+ + L+ +S G +MP Sbjct: 446 EGAGTLGGLTPGFVTVGFNMTVVPRLLAQNEEMILQYSINISALNELRSEEAGGTKIEMP 505 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R ++ V L +G T++L G +++ + G+ P L ++R R+ T Sbjct: 506 DIDTRNFNSEVRLHAGETLILHGFEQENHSSNRRGM---GS-PFAWMLGGSARGQRQRTA 561 Query: 410 IFIAATPFL 418 I I TP + Sbjct: 562 IVILITPEV 570 >gi|330966660|gb|EGH66920.1| type II and III secretion system protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 578 Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 85/259 (32%), Gaps = 23/259 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ + + N + QV V + E Q+ S S + Sbjct: 322 SNVETYLAKTNHSITQQVLFNVKVFEATLTDTDQLALNWSAVYKSLSTKWGLSLSNSVPG 381 Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +S G++D + ++ A+ I + P++T ++ Q A G Sbjct: 382 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 441 Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339 Y + SV T G + P ++ + L I +S Sbjct: 442 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPF 501 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ +P+Y + V+L SG T++L+G D++ + I P L Sbjct: 502 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--DELSDNTDKI-GTGS-PGFFGLGG 557 Query: 400 NSRFNREETEIFIAATPFL 418 ++ + + TP + Sbjct: 558 GRTRTSSQSFLVVLITPIV 576 >gi|170738260|ref|YP_001779520.1| type IVB pilus formation outer membrane protein [Burkholderia cenocepacia MC0-3] gi|169820448|gb|ACA95030.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia cenocepacia MC0-3] Length = 559 Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 58/311 (18%), Positives = 97/311 (31%), Gaps = 32/311 (10%) Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 ++ ++TVV + S + + + + ++L+ G Sbjct: 248 QPSVSATNTANTVVNSQLSVFNSLSASIKAMLSRYGGVVSSPATGSITVTDTPDVLDRVG 307 Query: 193 E----------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + QV + VT+ V G + G S S A F + Sbjct: 308 QFMEAQNRSLSKQVLIDVTVLSVDLSDDDSYGINWRAVYQALGTSFSLANTFS-TTATNP 366 Query: 243 GDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 F+ + + ++ AL R +R ++T ++ Q Q Y Sbjct: 367 VSFTAQVITPNSRASGTLAMISALSRQGKVRRKTSASITTLNDQPVPVQVATQQGYLASV 426 Query: 300 SSTGATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNA 345 S+T +V + G + P VL G + L+ T +S G Sbjct: 427 STTNTANVGSQTALTPGTVTTGFNMTLLPHVLDNGTVLLQFYTNISALLELKTIESGGQK 486 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P R V + SG T+VL+G + K GI P A R Sbjct: 487 IQTPQIDTRNFLQRVSMKSGQTLVLSGYEASNDNLTKSGI----GTPNNYAFGGGYDGAR 542 Query: 406 EETEIFIAATP 416 + EI I TP Sbjct: 543 DRQEIVILITP 553 >gi|254244616|ref|ZP_04937938.1| PilN [Pseudomonas aeruginosa 2192] gi|126197994|gb|EAZ62057.1| PilN [Pseudomonas aeruginosa 2192] Length = 569 Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++N N + QV L V + V Q+G ++ S + + Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375 Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +LD + ++ AL + + T+ P++T ++ QSA G Y Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435 Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342 S + V + G + P V+ G + L+I ++ G Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 551 TRNTKREVIVVLITPVVL 568 >gi|258545349|ref|ZP_05705583.1| type IV pilus secretin PilQ [Cardiobacterium hominis ATCC 15826] gi|258519452|gb|EEV88311.1| type IV pilus secretin PilQ [Cardiobacterium hominis ATCC 15826] Length = 111 Score = 90.9 bits (224), Expect = 5e-16, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 41/94 (43%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + L I + + V + T V + +G TIVL G+ K E +P Sbjct: 3 DMELNINNDELGNNVSVAGQTSFTKNTSGVKTNVLVDNGETIVLGGVYKQRQTAKTEKVP 62 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 LL IP++G F+ + E+ E+ I TP +V Sbjct: 63 LLGDIPVIGNAFKKNTRAFEKNEMLIFVTPRIVD 96 >gi|1314252|gb|AAC44041.1| BfpB [Escherichia coli] Length = 552 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 97/264 (36%), Gaps = 36/264 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +N LN E QVT+ V I V + S+ + + F + Sbjct: 294 NEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAM--SLEAFVNDNGGVLGSVSTSNFAAT 351 Query: 242 GGDFSVKGVLDR---FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297 G S G L+ S + +L+ L + + ++T +SGQ G Y + Sbjct: 352 SGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGNDRTYVSE 411 Query: 298 ------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---- 347 SS++ S +T G +++ P V G I L+ +SE V N D Sbjct: 412 IGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNNGFDQATV 471 Query: 348 ------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-----LLSKIPILGA 396 +P+ + L +G T+VLAG K + + +G+ LL GA Sbjct: 472 NGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGVGTTSFKLLG-----GA 526 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 L + T I TP ++ Sbjct: 527 L----NGSASRTVTVICITPRIID 546 >gi|10955355|ref|NP_053067.1| BfpB [Escherichia coli] gi|190014869|ref|YP_001965381.1| Lipoprotein [Escherichia coli] gi|194429634|ref|ZP_03062153.1| outer membrane lipoprotein BfpB [Escherichia coli B171] gi|215276196|ref|YP_002332159.1| lipoprotein [Escherichia coli O127:H6 str. E2348/69] gi|22653674|sp|Q9S142|BFPB_ECO11 RecName: Full=Outer membrane lipoprotein BfpB; AltName: Full=Bundle-forming pilus B; Flags: Precursor gi|229462858|sp|Q47068|BFPB_ECO27 RecName: Full=Outer membrane lipoprotein BfpB; AltName: Full=Bundle-forming pilus B; Flags: Precursor gi|6009381|dbj|BAA84840.1| BfpB [Escherichia coli] gi|109389590|gb|ABG29509.1| Lipoprotein [Escherichia coli] gi|194412358|gb|EDX28661.1| outer membrane lipoprotein BfpB [Escherichia coli B171] gi|215267792|emb|CAS07441.1| lipoprotein [Escherichia coli O127:H6 str. E2348/69] gi|323159042|gb|EFZ45043.1| outer membrane lipoprotein bfpB [Escherichia coli E128010] Length = 552 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 96/264 (36%), Gaps = 36/264 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +N LN E QVT+ V I V + +G + F + Sbjct: 294 NEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGV--LGSVSTSNFAAT 351 Query: 242 GGDFSVKGVLDR---FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297 G S G L+ S + +L+ L + + ++T +SGQ G Y + Sbjct: 352 SGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGNDRTYVSE 411 Query: 298 ------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---- 347 SS++ S +T G +++ P V G I L+ +SE V N D Sbjct: 412 IGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNNGFDQATV 471 Query: 348 ------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-----LLSKIPILGA 396 +P+ + L +G T+VLAG K + + +G+ LL GA Sbjct: 472 NGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGVGTTSFKLLG-----GA 526 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 L + T I TP ++ Sbjct: 527 L----NGSASRTVTVICITPRIID 546 >gi|330900252|gb|EGH31671.1| type II and III secretion system protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 552 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ + + N A QV V + E Q+ + +S + Sbjct: 296 SNVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLSTRWGLSLSNTVPG 355 Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +S G++D + ++ A+ I + P++T ++ Q A G Sbjct: 356 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 415 Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339 Y + SV T G + P ++ + L + +S Sbjct: 416 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 475 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ +P+Y + V+L SG T++L+G +++ + I P L Sbjct: 476 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 531 Query: 400 NSRFNREETEIFIAATPFL 418 + ++ + + TP + Sbjct: 532 GRKRTSSKSVLVVLITPIV 550 >gi|66044764|ref|YP_234605.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63255471|gb|AAY36567.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 578 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ + + N A QV V + E Q+ + +S + Sbjct: 322 SNVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPG 381 Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +S G++D + ++ A+ I + P++T ++ Q A G Sbjct: 382 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 441 Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339 Y + SV T G + P ++ + L + +S Sbjct: 442 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 501 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ +P+Y + V+L SG T++L+G +++ + I P L Sbjct: 502 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 557 Query: 400 NSRFNREETEIFIAATPFL 418 + ++ + + TP + Sbjct: 558 GRKRTSSKSVLVVLITPIV 576 >gi|323191604|gb|EFZ76862.1| outer membrane lipoprotein bfpB [Escherichia coli RN587/1] Length = 552 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 96/264 (36%), Gaps = 36/264 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +N LN E QVT+ V I V + +G + F + Sbjct: 294 NEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGV--LGSVSTSNFAAT 351 Query: 242 GGDFSVKGVLDR---FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297 G S G L+ S + +L+ L + + ++T +SGQ G Y + Sbjct: 352 SGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGNDRTYVSE 411 Query: 298 ------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---- 347 SS++ S +T G +++ P V G I L+ +SE V N D Sbjct: 412 IGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNNGFDQATV 471 Query: 348 ------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-----LLSKIPILGA 396 +P+ + L +G T+VLAG K + + +G+ LL GA Sbjct: 472 NGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGVGTTSFKLLG-----GA 526 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 L + T I TP ++ Sbjct: 527 L----NGSASRTVTVICITPRIID 546 >gi|289647482|ref|ZP_06478825.1| type II and III secretion system protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 542 Score = 90.5 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ + + N A QV V + E Q+ + +S + Sbjct: 286 SNVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPG 345 Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +S G++D + ++ A+ I + P++T ++ Q A G Sbjct: 346 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 405 Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339 Y + SV T G + P ++ + L + +S Sbjct: 406 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 465 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ +P+Y + V+L SG T++L+G +++ + I P L Sbjct: 466 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 521 Query: 400 NSRFNREETEIFIAATPFL 418 + ++ + + TP + Sbjct: 522 GRKRTSSKSILVVLITPIV 540 >gi|294086090|ref|YP_003552850.1| type II secretion PilQ [Candidatus Puniceispirillum marinum IMCC1322] gi|292665665|gb|ADE40766.1| Type II Secretion PilQ [Candidatus Puniceispirillum marinum IMCC1322] Length = 822 Score = 90.5 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 23/265 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLD 252 QV +++ + V +D +QI + S G S++ FG F++ Sbjct: 563 QVLIEIFMITVAKDFSRQINSAFRVLPSGGGNDVSEALLYGFGTGIAEARNSFNLNLTSP 622 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + LE R ++ PT+ G++A + + + S G + Sbjct: 623 NRELTNFFNFLETNNLARVVSSPTILVADGETAEISRVQKARVSRIEQSAGDNGTVLTNT 682 Query: 313 GV-------VLHFTPTVLS--PGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVEL 362 + L + ++ + L ++ E + +++ + T Sbjct: 683 VIDEFLAPFQLRISEVKINRINKTVQLEVELEDTRFAAALSSVTNETDETTDTITTKFWS 742 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPL----LSKI-PILGALFRNSRFNREETEIFIAATPF 417 G +VLAGL ++ G+P L I PI+G N N +E I P Sbjct: 743 APGDVVVLAGLTRNSETATTAGVPGTTGALGAISPIIG---GNDGINNNMSETIIFMAPT 799 Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKA 442 ++ P A + P + + KA Sbjct: 800 VIDPSADKQ---PHSAFRTRNRRKA 821 >gi|152986390|ref|YP_001349821.1| type IVB pilus formation outer membrane protein [Pseudomonas aeruginosa PA7] gi|150961548|gb|ABR83573.1| type IVB pilus formation outer membrane protein, R64 PilN family [Pseudomonas aeruginosa PA7] Length = 569 Score = 90.5 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++N N + QV L V + V Q+G ++ S + + Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375 Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +LD + ++ AL + + T+ P++T ++ QSA G Y Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435 Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342 S + V + G + P V+ G + L+I ++ G Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 551 TRNTKREVIVVLITPVVL 568 >gi|37955689|gb|AAP22528.1| PilN [Pseudomonas aeruginosa] Length = 569 Score = 90.5 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++N N + QV L V + V Q+G ++ S + + Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375 Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +LD + ++ AL + + T+ P++T ++ QSA G Y Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435 Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342 S + V + G + P V+ G + L+I ++ G Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 551 TRNTKREVIVVLITPVVL 568 >gi|148807357|gb|ABR13431.1| putative PilN [Pseudomonas aeruginosa] Length = 569 Score = 90.5 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++N N + QV L V + V Q+G ++ S + + Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375 Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +LD + ++ AL + + T+ P++T ++ QSA G Y Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435 Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342 S + V + G + P V+ G + L+I ++ G Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 551 TRNTKREVIVVLITPVVL 568 >gi|262274287|ref|ZP_06052098.1| putative type III secretion system EscC protein [Grimontia hollisae CIP 101886] gi|262220850|gb|EEY72164.1| putative type III secretion system EscC protein [Grimontia hollisae CIP 101886] Length = 489 Score = 90.5 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 53/271 (19%), Positives = 96/271 (35%), Gaps = 14/271 (5%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM------NLLNIAGEDQ-VTLKVT 201 G + D + A LSQ + + N L + G + V L Sbjct: 208 GQFTNLTDEEMATRAYRVKLSQGEKQALEEDEKSTKVQALPGPNALLVRGTQEEVKLAKR 267 Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVL 260 IA + +Q+ F + ++ ++ D G S G D V + F Sbjct: 268 IAALIDVKRRQLLFSLKVYDIATERKENLGIDGGWVNGSRGIYDIVVPPFTETKDFLKNF 327 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 AL R++ E L + Q F G + S + L+ T Sbjct: 328 QALYSNGIARSVYETNLLVLENQQGQF--GKKQTATLALVSNKQIQTEKIEADNSLYVTG 385 Query: 321 TVLSPGRIGLRIQ-TEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKD 376 +L G++ R+Q E + G + P + + V + T++L G Sbjct: 386 RLLPSGQVQARVQYVEEALDDEGEESEGSQRPPRVSSQSMTSEVYIKPDQTVILGGFDNT 445 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +Q G+PL+S +P++G LF+ + ++ + Sbjct: 446 VTEQRITGVPLISHLPLIGNLFKYTSESKHK 476 >gi|254238773|ref|ZP_04932096.1| type IV pilus protein PilN [Pseudomonas aeruginosa C3719] gi|126170704|gb|EAZ56215.1| type IV pilus protein PilN [Pseudomonas aeruginosa C3719] Length = 569 Score = 90.1 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++N N + QV L V + V Q+G ++ S + + Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375 Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +LD + ++ AL + + T+ P++T ++ QSA G Y Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435 Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342 S + V + G + P V+ G + L+I ++ G Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 551 TRNTKREVIVVLITPVVL 568 >gi|1122402|emb|CAA92328.1| BfpB [Escherichia coli] Length = 553 Score = 90.1 bits (222), Expect = 8e-16, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 96/264 (36%), Gaps = 36/264 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + +N LN E QVT+ V I V + +G + F + Sbjct: 295 NEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGV--LGSVSTSNFAAT 352 Query: 242 GGDFSVKGVLDR---FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297 G S G L+ S + +L+ L + + ++T +SGQ G Y + Sbjct: 353 SGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGNDRTYVSE 412 Query: 298 ------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---- 347 SS++ S +T G +++ P V G I L+ +SE V N D Sbjct: 413 IGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNNGFDQATV 472 Query: 348 ------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-----LLSKIPILGA 396 +P+ + L +G T+VLAG K + + +G+ LL GA Sbjct: 473 NGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGVGTTSFKLLG-----GA 527 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 L + T I TP ++ Sbjct: 528 L----NGSASRTVTVICITPRIID 547 >gi|107099850|ref|ZP_01363768.1| hypothetical protein PaerPA_01000870 [Pseudomonas aeruginosa PACS2] Length = 524 Score = 89.7 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++N N + QV L V + V Q+G ++ S + + Sbjct: 271 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 330 Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +LD + ++ AL + + T+ P++T ++ QSA G Y Sbjct: 331 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 390 Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342 S + V + G + P V+ G + L+I ++ G Sbjct: 391 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 450 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + Sbjct: 451 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 505 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 506 TRNTKREVIVVLITPVVL 523 >gi|225677418|ref|ZP_03788385.1| type II secretion system protein, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590562|gb|EEH11822.1| type II secretion system protein, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 500 Score = 89.7 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 44/264 (16%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ +N + QV ++ I EV D + ++ G D Sbjct: 241 AVEEYINKVKKLASSQVMIEAKIVEVVLDD--KYLSGMNLNDLQDGTKSIINQD------ 292 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298 ++ ++ L++ ++ P + AI+ Q A + H+Y T Sbjct: 293 --NSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSD 350 Query: 299 -------SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN------ 344 S+ T T + + GVVL P++ I + I +S Sbjct: 351 IQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDIEY 410 Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 D+P +R+ ++ +++ SG +V+ GL++ + +L Sbjct: 411 VAQQSKMKLNSDIPIVEIREMNSMLKIKSGEVMVIGGLIEHREDKQS----------LLH 460 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 + N E I +V Sbjct: 461 QKSKRLANNIRTVETVIFLKATIV 484 >gi|213972108|ref|ZP_03400200.1| type II and III secretion system protein [Pseudomonas syringae pv. tomato T1] gi|302061568|ref|ZP_07253109.1| type II and III secretion system protein [Pseudomonas syringae pv. tomato K40] gi|302131100|ref|ZP_07257090.1| type II and III secretion system protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923146|gb|EEB56749.1| type II and III secretion system protein [Pseudomonas syringae pv. tomato T1] Length = 578 Score = 89.7 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 85/259 (32%), Gaps = 23/259 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ + + N + QV V + E Q+ S S + Sbjct: 322 SNVETYLAKTNHSITQQVLFNVKVFEATLTDTDQLALNWSAVYKSLSTKWGLSLSNSVPG 381 Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +S G++D + ++ A+ I + P++T ++ Q A G Sbjct: 382 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 441 Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339 Y + SV T G + P ++ + L I +S Sbjct: 442 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPF 501 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ +P+Y + V+L SG T++L+G D++ + I P L Sbjct: 502 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--DELSDNTDKI-GTGS-PGFFGLGG 557 Query: 400 NSRFNREETEIFIAATPFL 418 ++ + + TP + Sbjct: 558 GRTRMSSQSFLVVLITPIV 576 >gi|32481696|gb|AAP84210.1| PilN2 [Pseudomonas aeruginosa PA14] Length = 540 Score = 89.7 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++N N + QV L V + V Q+G ++ S + + Sbjct: 287 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 346 Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +LD + ++ AL + + T+ P++T ++ QSA G Y Sbjct: 347 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 406 Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342 S + V + G + P V+ G + L+I ++ G Sbjct: 407 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 466 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + Sbjct: 467 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 521 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 522 TRNTKREVIVVLITPVVL 539 >gi|58698373|ref|ZP_00373287.1| type II secretion system protein, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225630071|ref|YP_002726862.1| type II secretion system protein, putative [Wolbachia sp. wRi] gi|58535127|gb|EAL59212.1| type II secretion system protein, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225592052|gb|ACN95071.1| type II secretion system protein, putative [Wolbachia sp. wRi] Length = 500 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 88/264 (33%), Gaps = 44/264 (16%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ +N + QV ++ I EV D + ++ G D Sbjct: 241 AVEEYINKVKKLASSQVMIEAKIVEVVLDD--KYLSGMNLNDLRDGTKSIINQD------ 292 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298 ++ ++ L++ ++ P + AI+ Q A + H+Y T Sbjct: 293 --NSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSD 350 Query: 299 -------SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN------ 344 S+ T T + + G+VL P++ I + I +S V Sbjct: 351 IQKDTRNSNQTLITKMNSVPIGIVLIIHPSINIDTSEIFMDIHPTLSRINGYVKDPDIEY 410 Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 D+P +R+ ++ +++ SG +V+ GL++ + +L Sbjct: 411 VAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQS----------LLH 460 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 + N E I +V Sbjct: 461 QKSKRLANNIRTVETVIFLKATIV 484 >gi|296391291|ref|ZP_06880766.1| Type IV B pilus protein [Pseudomonas aeruginosa PAb1] Length = 528 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++N N + QV L V + V Q+G ++ S + + Sbjct: 275 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 334 Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +LD + ++ AL + + T+ P++T ++ QSA G Y Sbjct: 335 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 394 Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342 S + V + G + P V+ G + L+I ++ G Sbjct: 395 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 454 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + Sbjct: 455 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 509 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 510 TRNTKREVIVVLITPVVL 527 >gi|315929956|gb|EFV09111.1| general secretory pathway protein D domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 355 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 10/156 (6%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S K + L + QV + V+I V + G + S+ + +F Sbjct: 201 SVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQ-NFNIGLNSQVNNENSFIQFQ 259 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 + G G+ +F+++++ L + L+ P L A++ Q A + G Y+ Sbjct: 260 NGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKE 319 Query: 300 SSTGATSVTT---------HDYGVVLHFTPTVLSPG 326 SS G + TT G++L+ P + G Sbjct: 320 SSKGTENGTTVSESYNNYSIFVGILLNILPEISDDG 355 >gi|58696766|ref|ZP_00372303.1| type II secretion system protein, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58537040|gb|EAL60176.1| type II secretion system protein, putative [Wolbachia endosymbiont of Drosophila simulans] Length = 495 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 88/264 (33%), Gaps = 44/264 (16%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ +N + QV ++ I EV D + ++ G D Sbjct: 236 AVEEYINKVKKLASSQVMIEAKIVEVVLDD--KYLSGMNLNDLRDGTKSIINQD------ 287 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298 ++ ++ L++ ++ P + AI+ Q A + H+Y T Sbjct: 288 --NSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSD 345 Query: 299 -------SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN------ 344 S+ T T + + G+VL P++ I + I +S V Sbjct: 346 IQKDTRNSNQTLITKMNSVPIGIVLIIHPSINIDTSEIFMDIHPTLSRINGYVKDPDIEY 405 Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 D+P +R+ ++ +++ SG +V+ GL++ + +L Sbjct: 406 VAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQS----------LLH 455 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 + N E I +V Sbjct: 456 QKSKRLANNIRTVETVIFLKATIV 479 >gi|126696034|ref|YP_001090920.1| Type II secretory pathway component PulD-like protein [Prochlorococcus marinus str. MIT 9301] gi|126543077|gb|ABO17319.1| Type II secretory pathway component PulD-like protein [Prochlorococcus marinus str. MIT 9301] Length = 572 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 112/321 (34%), Gaps = 46/321 (14%) Query: 138 VEMVSDTV-VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 V++ T+ L G++ T + + V + +Y + + L+I + QV Sbjct: 236 VKVYGATIGPLVGLIATTDERLQTVTMVG--------EKYLIDLANGFLQKLDIK-QKQV 286 Query: 197 TLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAA-------DFGGKFVSEG 242 L V + +V + I GS +F + + Sbjct: 287 ALSVKVLDVNMSDKNSSMKDYGGKLDDAFIIGSQGKIKSAFGSFLPVFPEGNSTDATTNP 346 Query: 243 GDFSVKGV--LDRFSFETVLHALERATAIRTLAEPTLTAIS---------------GQSA 285 G S + D SF +L A + LA PTL G Sbjct: 347 GINSSQRTTNFDNKSFFGLLEASIENGTTKVLASPTLLLSESSGSAGDGSSIGRKVGNEG 406 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSEPVIGVN 344 G + G+ + + GV L + + + V+ N Sbjct: 407 FVEIGDKVPVDATKGDGGSCTYSFETVGVKLGAKILGIDQNDYVTFTMTPIVTGISGSFN 466 Query: 345 A---GDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G + R+ DT + + G T+VL G++++ +PLL +P+LG LFR+ Sbjct: 467 IVGCGSVSKINNRRLDTGAIRIKDGETLVLTGVIQETDIDTTYKLPLLGDLPLLGGLFRS 526 Query: 401 SRFNREETEIFIAATPFLVKP 421 + ++++ E+ I TP +++ Sbjct: 527 KQASKDKRELIILVTPKVLED 547 >gi|224373205|ref|YP_002607577.1| hypothetical protein NAMH_1181 [Nautilia profundicola AmH] gi|223589165|gb|ACM92901.1| hypothetical protein NAMH_1181 [Nautilia profundicola AmH] Length = 396 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 98/261 (37%), Gaps = 20/261 (7%) Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR--RDILKQIGFQHSIT 220 + + L +N Y+N + N L I K+ A + ++ K+ IT Sbjct: 112 VPKKVLKDYLKNFYSNYKYQIFQNRLLITCTPVDYFKIKTA-ISHLQNSYKKANINFLIT 170 Query: 221 GSSSGPSKSFAADFG--GKFVSEG-----GDFSVKGVLDRFSFETVLHALERATAIRTLA 273 ++ +K D F S D +V +F + L A T++ Sbjct: 171 VINNKKAKEIGTDLNIKSPFHSSALFDLVTDTAVVSSSITNNFSAFIKFLNSKGAAETIS 230 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTG-------ATSVTTHDYGVVLHFTPTVLSPG 326 +PT+ I + + S Y T S +T T + D G+ ++ ++ Sbjct: 231 KPTILLIDSSNYTLESVHSIPYVTKSVTTDKDGNPVTQTDLKYKDVGLKIYIKNVYITDR 290 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT-IVLAGLLKDDIQQLKEGI 385 I + V V N D P + +T V+L + ++AGL G+ Sbjct: 291 SIDFDMDIYVESIVSYDN--DKPITDTKHFNTHVQLTKKSSGYLIAGLRTVTKISEDSGV 348 Query: 386 PLLSKIPILGALFRNSRFNRE 406 P+L IPILG LF+ ++ + E Sbjct: 349 PVLKDIPILGILFQKNKKSVE 369 >gi|116052606|ref|YP_792921.1| Type IV B pilus protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115587827|gb|ABJ13842.1| Type IV B pilus protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 545 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++N N + QV L V + V Q+G ++ S + + Sbjct: 292 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 351 Query: 242 GGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 +LD + ++ AL + + T+ P++T ++ QSA G Y Sbjct: 352 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 411 Query: 297 TVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342 S + V + G + P V+ G + L+I ++ G Sbjct: 412 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 471 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + PSY ++ D V L SG T+VL+G D + + Sbjct: 472 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 526 Query: 403 FNREETE-IFIAATPFLV 419 + E I + TP ++ Sbjct: 527 TRNTKREVIVVLITPVVL 544 >gi|330944277|gb|EGH46345.1| type II and III secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 492 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + + N A QV V + E Q+ + +S + Sbjct: 236 ANVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPG 295 Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +S G++D + ++ A+ I + P++T ++ Q A G Sbjct: 296 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 355 Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339 Y + SV T G + P ++ + L + +S Sbjct: 356 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 415 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ +P+Y + V+L SG T++L+G +++ + I P L Sbjct: 416 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 471 Query: 400 NSRFNREETEIFIAATPFL 418 + ++ + + TP + Sbjct: 472 GRKRTSSKSVLVVLITPIV 490 >gi|83716256|ref|YP_438966.1| type IV pilus biogenesis protein PilN [Burkholderia thailandensis E264] gi|83650081|gb|ABC34145.1| type IV pilus biogenesis protein PilN, putative [Burkholderia thailandensis E264] Length = 878 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 59/318 (18%), Positives = 106/318 (33%), Gaps = 49/318 (15%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L+ ++ ++ V + G + ++ D+ +E F++Q R+ Sbjct: 581 NGLQSAIQSMLSRYGSSVSSPA-----TGSI-SVTDTPDVLERVAAFMTQQNRSL----- 629 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 QV L VT+ V G S+ + + F ++ Sbjct: 630 ------------SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLT 677 Query: 241 EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + D S + F ++ AL + +R ++T ++ Q Q Y Sbjct: 678 KPADLSATVLSPTSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLA 737 Query: 298 VSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQT---------EVSEPV 340 S+T +V + G + P VL G + L+ T EVS Sbjct: 738 SVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSST 797 Query: 341 IGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G +A + P +R V + SG T+V++G + + G+ P + AL Sbjct: 798 GGRSAARIQTPDVDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALG 853 Query: 399 RNSRFNREETEIFIAATP 416 R I I TP Sbjct: 854 GGYEAQRAREVIVILITP 871 >gi|327538217|gb|EGF24896.1| protein containing Type II and III secretion system domain [Rhodopirellula baltica WH47] Length = 109 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 44/92 (47%) Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 + +V ++ P R TTV + G TIV+ GL++ + IP LS+ Sbjct: 9 EVSEDVRNATPALSINQYPIINRRSVSTTVSVKDGKTIVIGGLVQRETVDRVNRIPGLSR 68 Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPV 422 +P +G LF+ ++ + E+ I +P +V+ Sbjct: 69 LPGVGYLFQTTQRQTRDAEVVIFISPRIVRST 100 >gi|330952555|gb|EGH52815.1| type II and III secretion system protein [Pseudomonas syringae Cit 7] Length = 547 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 23/245 (9%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV V + E Q+ + +S + +S G++D Sbjct: 305 TQQVLFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVD 364 Query: 253 RFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307 + ++ A+ I + P++T ++ Q A G Y + SV Sbjct: 365 TANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASV 424 Query: 308 --------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRV 353 T G + P ++ + L I +S ++ +P+Y Sbjct: 425 GSSTAITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPFTSNGSSVQIPNYDA 484 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + V+L SG T++L+G D++ + I P L ++ + + Sbjct: 485 KSLSPKVKLRSGQTLILSGF--DELNDNTDKI-GTGS-PGFFGLGGGRTRTSSQSFLVVL 540 Query: 414 ATPFL 418 TP + Sbjct: 541 ITPIV 545 >gi|37525675|ref|NP_929019.1| hypothetical protein plu1738 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785103|emb|CAE14031.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 534 Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 92/258 (35%), Gaps = 27/258 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K ++ N QV L V I + D Q G S+ S+ + + G + + Sbjct: 285 KDYIDQQNKLLTTQVVLNVKILNLTFDRADQYGVDWSLAYKSA--RIGLSNESGNSVIDD 342 Query: 242 GGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 GG + +L ++ AL + + +P++T ++ Q+ Q Y Sbjct: 343 GGVSTNIHILKGPFSDSTLLIKALSAQGKVSIVTQPSVTTLNLQAVPMQVATQTGYVASI 402 Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVN 344 S+T V T G + P ++ +I L+ +S+ Sbjct: 403 SNTSTPQVGTSVGIEPATVTTGFNMLMLPYAMADKQILLQYNISLSDLKRLEKFGKEETG 462 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS--KIPILGALFRNSR 402 +P+ +R V L SG T+VL+G + + G L +LG + + Sbjct: 463 QVQLPTIDLRAFSQKVRLHSGETLVLSGFEQQSDTSDRSG---LGSPDNQLLG---GSRQ 516 Query: 403 FNREETEIFIAATPFLVK 420 R I + TP +V Sbjct: 517 GKRNHNVIVVMITPIVVD 534 >gi|218195539|gb|EEC77966.1| hypothetical protein OsI_17332 [Oryza sativa Indica Group] Length = 1496 Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 58/187 (31%), Gaps = 37/187 (19%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228 + V++ L+ QV ++ I EV + + Q G Q S G Sbjct: 229 RAVIDQLD-GRRAQVLVESLIVEVAANKVAQFGIQWQGVMGSYGNGTIGVIGTNSSQGGG 287 Query: 229 ------------SFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLA 273 + G +V V + + + LE L+ Sbjct: 288 ANILSLALAAASGNTTTIANSAANLGAGLNVGIAPRVNGNYYLGALANFLESTGDANVLS 347 Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS--SSTGA------TSVTTHDYGVVLHFTPTVLSP 325 P L + + A G + T S +STG+ T+V D ++L +P + Sbjct: 348 TPNLMTLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVRLMLRVSPQSTNT 407 Query: 326 GRIGLRI 332 G + Sbjct: 408 GTSNSHL 414 >gi|91791048|ref|YP_551999.1| type II and III secretion system protein [Polaromonas sp. JS666] gi|91700928|gb|ABE47101.1| type II and III secretion system protein [Polaromonas sp. JS666] Length = 566 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 89/253 (35%), Gaps = 26/253 (10%) Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFVSEGGDF 245 N A QV++ V + V D G +++ + S A + G+ Sbjct: 319 NQALNRQVSVNVRVLSVALDDSDDYGINWDAVYKNLATASNAYSIALKTAFPIANGAGNL 378 Query: 246 SVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + S ++ AL + L TL ++ Q + G + Y SS+ Sbjct: 379 VISAPATSGSRWAGSSAMISALSSQGRVTELTSSTLVTLNNQPSPVNVGRRVSYLQSSST 438 Query: 302 TGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGD 347 T +V T G + P ++ I L+ ++S G ++ Sbjct: 439 TQTANVGSTSSLTPGTIQTGFSMTLIPHIIDSREILLQYSIDLSSLLQLTTISSGTSSIQ 498 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P V+L SG T+V+AG +D++ + G+ + LG + +++ Sbjct: 499 APDISTSNFIQRVKLLSGETLVVAGFDQDNLSAVSNGV-GAADNVALG----SRNGSKKR 553 Query: 408 TEIFIAATPFLVK 420 I + P L + Sbjct: 554 NMIVVMIQPNLAQ 566 >gi|42520368|ref|NP_966283.1| type II secretion system protein, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410106|gb|AAS14217.1| type II secretion system protein, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 500 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 79/226 (34%), Gaps = 34/226 (15%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ +N + QV ++ I EV D + ++ G D Sbjct: 241 AVEEYINKVKKLASSQVMIEAKIVEVVLDD--KYLSGMNLNDLQDGTKSIINQD------ 292 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298 ++ ++ L++ ++ P + AI+ Q A + H+Y T Sbjct: 293 --NSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSD 350 Query: 299 -------SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN------ 344 S+ T T + + GVVL P++ I + I +S Sbjct: 351 IQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDIEY 410 Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 D+P +R+ ++ +++ SG +V+ GL++ + Sbjct: 411 VAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQ 456 >gi|76819723|ref|YP_335816.1| hypothetical protein BURPS1710b_A0657 [Burkholderia pseudomallei 1710b] gi|76584196|gb|ABA53670.1| unknown [Burkholderia pseudomallei 1710b] Length = 888 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 56/318 (17%), Positives = 101/318 (31%), Gaps = 49/318 (15%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L+ ++ ++ V + G + ++ D+ +E F++Q R+ Sbjct: 591 NGLQSAIQSMLSRYGSSVASPA-----TGSI-SVTDTPDVLERVAAFMAQQNRSL----- 639 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 QV L VT+ V G ++ + F ++ Sbjct: 640 ------------SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALT 687 Query: 241 EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 D S + F ++ AL + +R ++T ++ Q Q Y Sbjct: 688 APADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLA 747 Query: 298 VSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVN 344 S+T +V + G + P VL G + L+ T +S V Sbjct: 748 SVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSST 807 Query: 345 AGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G P +R V + SG T+V++G + + G+ P + AL Sbjct: 808 GGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALG 863 Query: 399 RNSRFNREETEIFIAATP 416 R I I TP Sbjct: 864 GGYEAQRAREVIVILITP 881 >gi|289678006|ref|ZP_06498896.1| outer-membrane type III secretion protein HrcC [Pseudomonas syringae pv. syringae FF5] Length = 305 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 13/189 (6%) Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV 336 + Q A ++S ++ G L TP L ++ L + E Sbjct: 1 LENQPAVIDFSRTEY--LTATSERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIED 58 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 + I PS R T + G++V+ G + +PLL IP +G Sbjct: 59 GQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGK 118 Query: 397 -LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455 LF++ + E TP L+ D P + + +++ +I + Sbjct: 119 LLFQSRSRELSQRERLFILTPRLI-----GDQVNPARYVQNGNPHDVD--DQMKRIKERR 171 Query: 456 EASEVEGQN 464 + E+ + Sbjct: 172 DGGELPTRG 180 >gi|254003197|ref|YP_003052663.1| type IVB pilus formation outer membrane protein, R64 PilN family [Methylovorus sp. SIP3-4] gi|253987280|gb|ACT52136.1| type IVB pilus formation outer membrane protein, R64 PilN family [Methylovorus sp. SIP3-4] Length = 559 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 104/288 (36%), Gaps = 30/288 (10%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218 + V + T N + ++ + N+A QV + V + V G + Sbjct: 275 KVVVTAATGTITVSDNPQVLAQVERYVQQQNMAMGRQVVVNVHVYSVSLSNSDSYGINWN 334 Query: 219 ITGSSSGPSKSFA-----------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 +S + F + K ++ G S + + + AL + Sbjct: 335 AVYNSLSGNFGFTLSNAFAPETGSTNLALKILATAGSASNSELKAFAGSQVMFDALSKQG 394 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTT-----HDYGVVLHF 318 + + ++T ++ Q A G Q Y SS+T G+ SVTT + G ++ Sbjct: 395 RVSQITSSSITTLNNQPAPIQVGRQRTYLASSSTTIGTVGSPSVTTLQPGLINTGFSMNL 454 Query: 319 TPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 P +L + L+ ++S G ++ P R V+L SG T+V+ G Sbjct: 455 VPHILDSKELLLQYAVDLSSLIGITTVTSGTSSIQTPEIETRNFLQRVKLNSGDTLVVTG 514 Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + + +GI S + + G L N N + + P +++ Sbjct: 515 FEQTQDEANMQGIGDASNVSLGGGLTGNKGRNV----LVVLIQPVIIE 558 >gi|37523454|ref|NP_926831.1| hypothetical protein gll3885 [Gloeobacter violaceus PCC 7421] gi|35214458|dbj|BAC91826.1| gll3885 [Gloeobacter violaceus PCC 7421] Length = 299 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 93/218 (42%), Gaps = 15/218 (6%) Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAE 274 Q+S + +G + G + + ++ + ++AL+ TL + Sbjct: 60 QYSGLAAGAGALSTAPLGNNGVLPNRSALTLTFANIVLQLQLLQQVNALQ------TLID 113 Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHFTPTVLSPGR-IGLR 331 L G++A+ + Q S G +S + L+ TP VL + + + Sbjct: 114 QQLVVSDGETATISQNVQFRIPQTIVSNGTALSSTQAINARTTLNLTPMVLPSKKQVAIS 173 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 ++ + S+P +G+ D + L SGG +L G+ + D ++ +P+LS Sbjct: 174 VRGDFSDP---QGSGEGLVINTNSIDIPNLRLDSGGVALLGGITRHDEANIEYRVPVLSA 230 Query: 391 IPILGALFRNSRFNREETEIFIAATPFL-VKPVAMRDL 427 IPILG LF++S ++ + + P + +P+A +L Sbjct: 231 IPILGDLFKSSNRVVKDQRLLVMIEPVIQEQPLAGAEL 268 >gi|237801977|ref|ZP_04590438.1| type II and III secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024835|gb|EGI04891.1| type II and III secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 300 Score = 87.8 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 87/259 (33%), Gaps = 23/259 (8%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 ++ + + N A QV V + E Q+ + +S + Sbjct: 44 ANVETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPG 103 Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +S G++D + ++ A+ I + P++T ++ Q A G Sbjct: 104 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 163 Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339 Y + SV T G + P ++ + L + +S Sbjct: 164 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 223 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 ++ +P+Y + V+L SG T++L+G +++ + I P L Sbjct: 224 TSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGG 279 Query: 400 NSRFNREETEIFIAATPFL 418 + ++ + + TP + Sbjct: 280 GRKRTSSKSVLVVLITPIV 298 >gi|222872747|gb|EEF09878.1| predicted protein [Populus trichocarpa] Length = 414 Score = 87.8 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 44/325 (13%), Positives = 107/325 (32%), Gaps = 67/325 (20%) Query: 19 SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 + S+ + P + A I + + + +++ ++ + + + V++ D Sbjct: 135 AAGSIMRTPVTLQFRDANIRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNAAIED 191 Query: 79 VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL----IERDIAH 122 V V + T++++ ++ L + D Sbjct: 192 AVDLILLQSQLDKKVLNANTLFIYPATP---------AKQQEYQELKVRTFQLSNVDSKQ 242 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 ++ L+ + + V+ ++TV + G TI+ +++ + + Sbjct: 243 VQSLLKSLLKIKEVVVDERANTVTIRGTPDTIRVAEQMIAAQD----------------- 285 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 E +V L+V + EV R+ L +G + + + P+ A +G Sbjct: 286 --------LPEPEVMLEVQVLEVSRERLTDLGIAWPNSFTMATPAS--ATTWGVLHHLTA 335 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + V + +F+ T LA P + + + A G + + SS+ Sbjct: 336 NELEVSPLSATANFKL------TDTDANLLASPRIRTRNKEKARILIGDKVPVISSSSTP 389 Query: 303 G------ATSVTTHDYGVVLHFTPT 321 ++ D G+ L P Sbjct: 390 STSGPSFTQTIQYLDVGIKLEVEPQ 414 >gi|325529072|gb|EGD06072.1| putative type II secretory pathway [Burkholderia sp. TJI49] Length = 220 Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 20/173 (11%) Query: 313 GVVLHFTPTVLSP----------------GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356 G + TP ++ + + I + V G ++P + R Sbjct: 18 GTSIKVTPMIVDDAIRNAAAVSGSPASNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNI 77 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 T + G ++++AG D++ K G+P LS IP++G LF+ + + E F TP Sbjct: 78 VTKTMIDEGRSLLIAGFNDDEVHLNKSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTP 137 Query: 417 FLVKPVAM--RDLSRPDDHYSVEDDAKAFFFNR--VNKIYGPKEASEVEGQNY 465 +V +M D S + DA R N I P + G + Sbjct: 138 RVVSTASMYAPDGSPVNPGVDAPADASGVSMYRPPDNDIAVPLTPQPLPGTKF 190 >gi|269469298|gb|EEZ80806.1| Type II secretory component HofQ [uncultured SUP05 cluster bacterium] Length = 85 Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%) Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 + P+ R+ TT+ + +V+ G+ +P +P++G LF + + Sbjct: 11 SNTAPAINKREITTTLLVKDNTIVVIGGVFTQTTVDATNKVPFFGDLPLIGGLFSYKKDS 70 Query: 405 REETEIFIAATPFLV 419 E+ I P ++ Sbjct: 71 DVRKELLIFLAPRII 85 >gi|330862439|emb|CBX72597.1| hypothetical protein YEW_HP33920 [Yersinia enterocolitica W22703] Length = 149 Score = 87.4 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 60/153 (39%), Gaps = 11/153 (7%) Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQ 333 + ++ A + T + + G +L TP ++ + L + Sbjct: 1 MVTLNNIQAVLD--KNVTFYTKLQGDKVAKLESITSGSLLRVTPRMIDSDGVKEVLLNLN 58 Query: 334 TEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + + +++ + +P + T L G +++L G ++D + + IPLL IP Sbjct: 59 IQDGQQQAPLSSSEPLPEIQNSDISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIP 118 Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425 +LG LFR++ FL+K V + Sbjct: 119 LLGGLFRSTNKQSHS-----VVRLFLIKAVPVN 146 >gi|325271188|ref|ZP_08137740.1| Type II secretory pathway, component PulD [Pseudomonas sp. TJI-51] gi|324103677|gb|EGC00972.1| Type II secretory pathway, component PulD [Pseudomonas sp. TJI-51] Length = 360 Score = 87.4 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 93/264 (35%), Gaps = 36/264 (13%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 RD+A+L TL+ V+ V + G + S + S L + Sbjct: 118 RDVAYLSETLQPLFEGR----FAVNRQVSVPGATPSPLSSP---QGSAASLVSRDSDHLV 170 Query: 178 NSSSKKVMNLLNIAGED------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 SK + + + +V ++ + EV+ TG S+G + S A Sbjct: 171 FVGSKAEIEKVKLLLPQIDIAMGEVMVRGVVYEVQ-------------TGDSNGSAFSLA 217 Query: 232 ADFG---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 A G F + L F VL AL R +++P+L SG A+F+ Sbjct: 218 ASLLKGKLNITLAGNPFDNQVSLSTSDFSAVLSALSSDNRFRVVSQPSLRVRSGAEATFS 277 Query: 289 SGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343 G + S SV D GV+ + P V + L + ++S V Sbjct: 278 VGAEVPVLGAVSYAQGSGEPIQSVQYRDSGVIFNLRPQVRES-TVDLVVDQQLSNFVQTT 336 Query: 344 NA-GDMPSYRVRKADTTVELPSGG 366 + P+ R+ T+V++ Sbjct: 337 TGVNNSPTLTKRQLTTSVQMRDRE 360 >gi|157164174|ref|YP_001467421.1| hypothetical protein CCC13826_0019 [Campylobacter concisus 13826] gi|157164249|ref|YP_001467411.1| ABC transporter ATP-binding protein YojI [Campylobacter concisus 13826] gi|157101403|gb|EAT97210.2| hypothetical protein CCC13826_0019 [Campylobacter concisus 13826] gi|157101412|gb|EAT97201.2| hypothetical protein CCC13826_1100 [Campylobacter concisus 13826] Length = 389 Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 9/171 (5%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------TVSSSTGA 304 +++ S ++++ L+ + P +T I + + S + + S S Sbjct: 180 VNKDSVTSLINLLKEKGVSDLIYNPRVTVIDNKDSVIESVIKTPIQKSSIDIQNSQSITT 239 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 V D G+ L+ + +++ + + + + P R T V L Sbjct: 240 NQVEYQDVGLKLYISSVLITNDSVSFTLDLYIENLLDDTLT---PRISSRHLKTNVYLTD 296 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 + ++ G+ + + + IP + IPILG + + I T Sbjct: 297 TNSFLIGGINSKETIKSTKTIPFIENIPILGDITTYKSEKTSDYSFSIFIT 347 >gi|153930668|ref|YP_001393312.1| PilN family type IV pilus biogenesis protein [Yersinia pseudotuberculosis IP 31758] gi|152958209|gb|ABS45671.1| type IV pilus biogenesis protein, PilN family [Yersinia pseudotuberculosis IP 31758] Length = 564 Score = 86.6 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 87/258 (33%), Gaps = 25/258 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVS 240 K + NI QV L V I V L +G + I S SG + + Sbjct: 312 KTFIASENIKITQQVLLNVKILSVSLKDLDDLGLDWNVIYKSMSGKWGINLKNAFSDLAT 371 Query: 241 EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295 S+ + F+ ++ AL + + P++T ++ Q A Q Y Sbjct: 372 NATSGSISILDPNSQFDGTTMLIKALSEQGKVSVVTSPSITTLNLQPAPVQVSRQTSYLA 431 Query: 296 --KTVSSSTGATSVT----THDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIG 342 T S++ T + T G + P ++ I L ++ + Sbjct: 432 SRSTTSTTNAGTETSLTPGTVTTGFNMSLLPAIIPDTRDLLLQYNINLSSLIQIRKIGTE 491 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN-S 401 N +MP R V+L SG T+V++G + K G+ G F Sbjct: 492 NNQIEMPDTDSRIFSQQVKLRSGETLVISGFEQTADNANKSGV---GDAEFWG--FGGAR 546 Query: 402 RFNREETEIFIAATPFLV 419 N I + TP L+ Sbjct: 547 SRNSTRDIIVVIITPVLL 564 >gi|170765827|ref|ZP_02900638.1| outer membrane lipoprotein BfpB [Escherichia albertii TW07627] gi|170124973|gb|EDS93904.1| outer membrane lipoprotein BfpB [Escherichia albertii TW07627] Length = 545 Score = 86.6 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 91/256 (35%), Gaps = 23/256 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSE 241 + + LN E QVT+ V + V + + ++ + G S ++F + Sbjct: 290 EYIQKLNKQLERQVTIDVAVYSVSTSDVSNLSMSLQALLTRNGGVLGSITSNFPAASGTP 349 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + G + + + +L+ L + + + +T +SGQ G Y + + Sbjct: 350 TITGFLNGNGNSNN-QVLLNLLATSGKVSVVTSAAVTTMSGQPVPLKVGNDRTYVSQIGT 408 Query: 302 TGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------- 347 S ++ G +++ P+V G I L+ +S V + D Sbjct: 409 VMGQTSTTSSASTSSVTTGFLMNLLPSVGEDGNILLQYGITISSLVGSNDGFDQATVNGT 468 Query: 348 ---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ + L +G T++LAG + + G L K P L + Sbjct: 469 IIQLPNVDSTTFVQSSLLKNGNTLILAGYEQKRNEVSDSG---LGK-PGFKLLGGSRNGK 524 Query: 405 REETEIFIAATPFLVK 420 I+ TP ++ Sbjct: 525 DSREIKIISITPRIID 540 >gi|254252520|ref|ZP_04945838.1| type II and III secretion system protein [Burkholderia dolosa AUO158] gi|124895129|gb|EAY69009.1| type II and III secretion system protein [Burkholderia dolosa AUO158] Length = 200 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 9/119 (7%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS---PRTMYLFGKNVGQANVI 100 G I + + + +Q V V DP ADV++ ++ L K G NV+ Sbjct: 21 AGASGTIELAVGAQRQISAGRALQRVAVGDPAVADVLIMKGSRSGSVLLVAKAPGATNVM 80 Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 L + ++ + ++ + + S RV T VL G ++ +R Sbjct: 81 LWERGRDEPTVWNVEV------VDAAAQAVLDGSTPRVNAYGGTAVLRGTAASLDAHER 133 >gi|194437943|ref|ZP_03070037.1| outer membrane lipoprotein BfpB [Escherichia coli 101-1] gi|194423164|gb|EDX39157.1| outer membrane lipoprotein BfpB [Escherichia coli 101-1] Length = 545 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 91/256 (35%), Gaps = 23/256 (8%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSE 241 + + LN E QVT+ V + V + + ++ + G S ++F + Sbjct: 290 EYIQKLNKQLERQVTIDVAVYSVSTSDVSNLSMSLQALLTRNGGVLGSITSNFPAASGTP 349 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 + G + + + +L+ L + + + +T +SGQ G Y + + Sbjct: 350 TITGFLNGNGNSNN-QVLLNLLATSGKVSVVTSAAVTTMSGQPVPLKVGNDRTYVSQIGT 408 Query: 302 TGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------- 347 S ++ G +++ P+V G I L+ +S V + D Sbjct: 409 VMGQTSTTSSASTSSVTTGFLMNLLPSVGEDGNILLQYGITISSLVGSNDGFDQATVNGT 468 Query: 348 ---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ + L +G T++LAG + + G L K P L + Sbjct: 469 IIQLPNVDSTTFVQSSLLKNGNTLILAGYEQKRNEISDSG---LGK-PGFKLLGGSRNGK 524 Query: 405 REETEIFIAATPFLVK 420 I+ TP ++ Sbjct: 525 DSREIKIISITPRIID 540 >gi|283779820|ref|YP_003370575.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] gi|283438273|gb|ADB16715.1| type II and III secretion system protein [Pirellula staleyi DSM 6068] Length = 1305 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 81/243 (33%), Gaps = 45/243 (18%) Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 G G S FGG F +L +L+A + L P +T Sbjct: 1049 GFRQGSFGSAVPQFGGFDAGTAASFGFA-ILSDIEVFFLLNAAQGDDRTNILQAPKVTLF 1107 Query: 281 SGQSASFTSGGQHLY-----KTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGR-IGLRI 332 +GQ A + Q + V A + + G L V R + L + Sbjct: 1108 NGQQAFVSDTSQRPFVISVIPVVGDFAAAQQPVIAVLNEGTSLSVQGVVSPDRRFVRLTM 1167 Query: 333 QTEVSEPV--------------------IGVNAGDMPSYRVRKAD--TTVE--------- 361 S N + + VR TTV+ Sbjct: 1168 VPFFSTIGDVDTFTFTGSTTTDSGSVIQDPSNPDENATDNVRTTTEGTTVQLPTFAFTTV 1227 Query: 362 -----LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 +P GGT++L G+ + + + G+PLLSK+P + LF+N RE + + TP Sbjct: 1228 TTTVSVPDGGTVLLGGIKRLREGRNERGVPLLSKVPYVSRLFKNVGIGREAQSLMMMVTP 1287 Query: 417 FLV 419 ++ Sbjct: 1288 RII 1290 >gi|213419653|ref|ZP_03352719.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 173 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 10/132 (7%) Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGG 366 YG ++ P + G+I + + E + +P T +P G Sbjct: 17 YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGK 76 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G +D + IP+L K+P++G+LFR S N+ F+++P + D Sbjct: 77 SLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN-----VVRVFMIEPKEIVD 131 Query: 427 LSRPDDHYSVED 438 PD SV + Sbjct: 132 PLTPDASESVNN 143 >gi|196228122|ref|ZP_03126989.1| peptidase M56 BlaR1 [Chthoniobacter flavus Ellin428] gi|196227525|gb|EDY22028.1| peptidase M56 BlaR1 [Chthoniobacter flavus Ellin428] Length = 1079 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 86/304 (28%), Gaps = 73/304 (24%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 Q+ ++ E+ + K Q G + Sbjct: 358 PASPQIEIEAKFVEIHSPVAKSSDVQAG---------------------DAEGQADRPTI 396 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT------VSSSTGA 304 F+ ++ +L + + L+ P +T + Q A + + T S + Sbjct: 397 FTDPQFQLIIRSLNQKKGVDILSSPRVTTRANQRAVVEAVREFRTPTEWEWRKESGTWKP 456 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIG-------------LRIQTEVSEPVIGVNAGDMP-- 349 T T + G+ L P + G + L + T + A Sbjct: 457 TKFETKNLGISLEVEPRLGRDGTLEVHAISSVVEFLGFLDLDTGKTILASRTAADGNVEV 516 Query: 350 -----------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 Y R+ ++TV L SG T +A L + + E Sbjct: 517 PPVVPGHRSKGIYSERRKESTVNLKSGETFQIADLPETADTKALEK-------------- 562 Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458 + I + +P L+ P + + D S + ++ + GPK+ Sbjct: 563 -----HASRKRIMVFISPRLIAPASAAAGTGSDATGSPGAQGELVLHGTLD-LNGPKQMV 616 Query: 459 EVEG 462 V G Sbjct: 617 AVSG 620 >gi|209922067|ref|YP_002296140.1| lipoprotein PilN [Escherichia coli SE11] gi|209915245|dbj|BAG80318.1| lipoprotein PilN [Escherichia coli SE11] Length = 560 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 85/261 (32%), Gaps = 26/261 (9%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + + ++ N QV L V + V +Q G ++ S + + + G F Sbjct: 297 AVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFT 356 Query: 240 SEGG------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 D + ++ AL + + T + Q Sbjct: 357 GATSAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQT 416 Query: 294 LYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---- 341 +Y S++T T V G + P + G + L++ +S+P Sbjct: 417 VYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSF 476 Query: 342 ----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G + +MP ++R V L G ++V+ G +++ K G P+ G Sbjct: 477 TSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGT-FTPANPLFG-- 533 Query: 398 FRNSRFNREETEIFIAATPFL 418 + E + + I TP Sbjct: 534 -GSQTGKNERSTLVIIITPTF 553 >gi|149190975|ref|ZP_01869237.1| hypothetical protein VSAK1_26575 [Vibrio shilonii AK1] gi|148835218|gb|EDL52193.1| hypothetical protein VSAK1_26575 [Vibrio shilonii AK1] Length = 479 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 101/312 (32%), Gaps = 28/312 (8%) Query: 125 MTLRRFIADSNIRVEMVSD-TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 L D +I E+ +D VL G S + + + Sbjct: 180 QFLNIGYQDVDIISEIANDVRNVLGG---DEAAKNAVTASSNMSAITVTTSPDKMQTVEH 236 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEG 242 ++ QV L V I E D+ + G ++ S G K F G Sbjct: 237 LIEHYQKELSKQVLLDVRIVEFFSDVGTERGVNWNLVYDSGEGIVKFFVPGTNTLSKQAG 296 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-KTVSSS 301 + +G E ++ LE+ ++ + T + Q A T Y VSS+ Sbjct: 297 YGMAFEGTGKWSGSEALIKVLEQQGSVSSETPVTYMVSNNQPARITQQRDVPYLYEVSSN 356 Query: 302 TGATSVT------THDYGVVLHFTPTVLSPGRIGL-------RIQTEVSEPVIGVNAGDM 348 + +V+ T GV T V S + L +I E ++ V ++ G + Sbjct: 357 SNENTVSTGVTRKTEVEGVDFMVTANVQSD-YVSLRMSGQLQKITKEETKKVENIDLGFL 415 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 + + + +L G T V+A + + + LF + E Sbjct: 416 -TTQKSEITFANKLRYGQTYVIASVKQQTKTAEETK-------NFFSTLFGGTGSKNETI 467 Query: 409 EIFIAATPFLVK 420 E + TP V+ Sbjct: 468 ETLVLLTPRKVQ 479 >gi|9507539|ref|NP_052546.1| lipoprotein [Plasmid ColIb-P9] gi|32470260|ref|NP_863484.1| lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|168758374|ref|ZP_02783381.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli O157:H7 str. EC4401] gi|168770673|ref|ZP_02795680.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli O157:H7 str. EC4486] gi|194447046|ref|YP_002039161.1| type IVB pilus formation outer membrane protein, R64 PilN family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194447207|ref|YP_002043952.1| type IVB pilus formation outer membrane protein, R64 PilN family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195940171|ref|ZP_03085553.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli O157:H7 str. EC4024] gi|256367618|ref|YP_003108177.1| lipoprotein [Escherichia coli] gi|307313385|ref|ZP_07593008.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli W] gi|4512536|dbj|BAA75185.1| lipoprotein [Plasmid ColIb-P9] gi|4903089|dbj|BAA77974.1| lipoprotein [Plasmid R64] gi|20521628|dbj|BAB91692.1| PilN type IV pilus secretin [Salmonella enterica subsp. enterica serovar Typhimurium] gi|70610254|gb|AAZ05401.1| lipoprotein [Salmonella enterica] gi|85813727|emb|CAJ65888.1| lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|189354781|gb|EDU73200.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli O157:H7 str. EC4401] gi|189360460|gb|EDU78879.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli O157:H7 str. EC4486] gi|194358490|gb|ACF56934.1| type IVB pilus formation outer membrane protein, R64 PilN family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194405511|gb|ACF65732.1| type IVB pilus formation outer membrane protein, R64 PilN family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|228480873|gb|ACQ42199.1| lipoprotein [Escherichia coli] gi|306906807|gb|EFN37317.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli W] gi|315063763|gb|ADT78089.1| Type IVB thin prepilin secretin [Escherichia coli W] gi|321271467|gb|ADW79557.1| IncI1 conjugal transfer protein PilN [Escherichia coli] gi|321271565|gb|ADW79654.1| IncI1 conjugal transfer protein PilN [Escherichia coli] gi|321271661|gb|ADW79749.1| IncI1 conjugal transfer secretin protein PilN [Salmonella enterica subsp. enterica serovar Kentucky] gi|323133139|gb|ADX20567.1| lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323381016|gb|ADX53283.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli KO11] gi|323959238|gb|EGB54902.1| R64 PilN family protein type IVB pilus formation outer membrane protein [Escherichia coli H489] gi|330907922|gb|EGH36445.1| incI1 plasmid conjugative transfer lipoprotein PilN [Escherichia coli AA86] gi|332346621|gb|AEE59953.1| IncI1 conjugal transfer secretin protein PilN [Escherichia coli UMNK88] Length = 560 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 85/261 (32%), Gaps = 26/261 (9%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + + ++ N QV L V + V +Q G ++ S + + + G F Sbjct: 297 AVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFT 356 Query: 240 SEGG------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 D + ++ AL + + T + Q Sbjct: 357 GATSAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQT 416 Query: 294 LYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---- 341 +Y S++T T V G + P + G + L++ +S+P Sbjct: 417 VYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSF 476 Query: 342 ----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G + +MP ++R V L G ++V+ G +++ K G P+ G Sbjct: 477 TSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGT-FTPANPLFG-- 533 Query: 398 FRNSRFNREETEIFIAATPFL 418 + E + + I TP Sbjct: 534 -GSQTGKNERSTLVIIITPTF 553 >gi|330890299|gb|EGH22960.1| general secretion pathway protein D [Pseudomonas syringae pv. mori str. 301020] Length = 123 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 3/101 (2%) Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-A 423 G +VL GLL+D Q E +P LS+IP+LG LFRN + +T + + P++++ Sbjct: 1 GQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIRDSGT 60 Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 R+++ + Y A+ N + +A ++ Sbjct: 61 GRNITL--NRYEFMRRAQGNLRPERNWMLPDMQAPQLPSAA 99 >gi|322514180|ref|ZP_08067245.1| rough colony protein A [Actinobacillus ureae ATCC 25976] gi|322119966|gb|EFX91968.1| rough colony protein A [Actinobacillus ureae ATCC 25976] Length = 162 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 3/138 (2%) Query: 44 IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103 K ++ + +++ + V VS P AD + T L+ K G+A ++ Sbjct: 24 TAVAKTFALEQGQSQLIKTDAKIDTVFVSSPDVADYEILDDNTFMLYTKAEGRAEIVAFD 83 Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 DG + +IA ++ +SN+ ++ + V+ G + +S+ Sbjct: 84 VDGTPLTEDFVNVNNAINNIAAANAQIQTRFPNSNLSIKKIGKAYVIEGKAKNAAESEEI 143 Query: 161 VELSETFLSQSGRNQYAN 178 + L + A Sbjct: 144 NRIVGESLGAGRKVVEAK 161 >gi|83404883|ref|YP_424898.1| PilN [Escherichia coli] gi|299836184|ref|YP_003717753.1| putative lipoprotein [Escherichia coli ETEC 1392/75] gi|46949078|gb|AAT07432.1| PilN [Escherichia coli] gi|83308609|emb|CAI79602.1| lipoprotein (PilN protein) [Escherichia coli] gi|297374533|emb|CBL93616.1| putative lipoprotein [Escherichia coli ETEC 1392/75] Length = 560 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 88/261 (33%), Gaps = 26/261 (9%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + + ++ N QV L V + V +Q G ++ S + + + G F Sbjct: 297 AVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFT 356 Query: 240 SEGGDF-----SVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 S G +FS ++ AL + + T + Q Sbjct: 357 GATSAGVSILDSATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQT 416 Query: 294 LYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---- 341 +Y S++T T V G + P + G + L++ +S+P Sbjct: 417 VYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSF 476 Query: 342 ----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G + +MP ++R V L G ++V+ G +++ K G P+ G Sbjct: 477 TSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGT-FTPANPLFG-- 533 Query: 398 FRNSRFNREETEIFIAATPFL 418 + E + + I TP Sbjct: 534 -GSQTGKNERSTLVIIITPTF 553 >gi|300819642|ref|ZP_07099834.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 107-1] gi|300907596|ref|ZP_07125231.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 84-1] gi|301306610|ref|ZP_07212671.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 124-1] gi|300400664|gb|EFJ84202.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 84-1] gi|300527809|gb|EFK48871.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 107-1] gi|300838171|gb|EFK65931.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 124-1] gi|315252987|gb|EFU32955.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 85-1] gi|315295843|gb|EFU55160.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 16-3] gi|324020971|gb|EGB90190.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 117-3] Length = 552 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 26/258 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + ++ N QV L V + V +Q G ++ S + + + G F Sbjct: 292 RYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGAT 351 Query: 243 G------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 D + ++ AL + + T + Q +Y Sbjct: 352 SAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYV 411 Query: 297 TVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------- 341 S++T T V G + P + G + L++ +S+P Sbjct: 412 AQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSK 471 Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G + +MP ++R V L G ++V+ G +++ K G P+ G + Sbjct: 472 DGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGT-FTPANPLFG---GS 527 Query: 401 SRFNREETEIFIAATPFL 418 E + + I TP Sbjct: 528 QTGKNERSTLVIIITPTF 545 >gi|62959541|gb|AAY23728.1| hydroxylamine oxidase [Acinetobacter sp. YY-5] Length = 149 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 7/117 (5%) Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------- 304 R ++ ++ AL+ T L+ P++ + + A G + T S +T Sbjct: 27 SRKAYGALIQALKANTKSNLLSTPSIVTMDNEEAYIVVGQNVPFVTGSVATQGNSTVNPY 86 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361 T+V D GV L P + G + L ++ EVS R T+V Sbjct: 87 TTVERKDVGVTLKVVPHIGEGGSVRLEVEQEVSAVQESRGQATDLVTSKRAIKTSVL 143 >gi|167589098|ref|ZP_02381486.1| type IV pilus biogenesis protein PilN, putative [Burkholderia ubonensis Bu] Length = 419 Score = 84.3 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 79/245 (32%), Gaps = 25/245 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V + G S+ + F ++ D S + Sbjct: 172 SRQVLLNVTVLSVSLNAGDAYGIDWSLVYKTMSAGFGVTNPFTPVALTSPADLSATVLSP 231 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307 F ++ AL + +R ++T ++ Q Q Y S+T +V Sbjct: 232 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVAKQTGYLASVSTTNTANVGS 291 Query: 308 ------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSY 351 T G + P VL G + L+ T +S G P Sbjct: 292 STALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKDVTSSEAKGATKIQTPDV 351 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 +R + + SG T+V++G + + G+ P + AL R I Sbjct: 352 DMRNFLQRIAMKSGETLVISGYEGTNDSLDERGV----GTPKMIALGGGYEAQRTREVIV 407 Query: 412 IAATP 416 I TP Sbjct: 408 ILITP 412 >gi|301167753|emb|CBW27337.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 459 Score = 84.3 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 65/400 (16%), Positives = 134/400 (33%), Gaps = 49/400 (12%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT-MYLFGKNVGQANVILIGHDGKQ 108 I+I + + + P ++++ VS+ V + + + GK+ G + + + + Sbjct: 60 INIAVGEYYRIPTP-NLENYAVSNKELLSVRHRKAQEGLLIRGKHQGFSTIKVWN-SHQV 117 Query: 109 MLNLDILIERDIAHLEMTLRRF-IADSNIRVEMVSDTVVLHGMVRTIQD----------- 156 I I+ I +M L I E+ S + L + + Sbjct: 118 EKKYHIFIQTKIGLAKMKLLALNFEQMGIDTELSSSKLKLCSTITELNQFKSISSLLKSS 177 Query: 157 -----SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI--------- 202 + +S+ + Y KV ++ I Q+ ++ + Sbjct: 178 EKSINIDNQLLISKELQRELANLIYPKFLKNKVSDI--ICQFHQMPIRCKVPKSNLDIDS 235 Query: 203 ----------AEVRR--DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 E+ + D L F+ + S G +S ++ Sbjct: 236 LVKYWFHEIPIEIHQFQDELTLDNFKLKTKLILLESASSEVLALGLDKISNNLYALIRND 295 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L+ F E +++ + + ++A P + + G + + S T+ Sbjct: 296 LNSFIGENIINFENKRVKLSSIATPEIITRVNNEGEISIGSEIPFTRKSKEEYVTN--WK 353 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 G+ + T L I+TE+S P+ A + K + V++ G ++ + Sbjct: 354 FAGLKIK-TKLEKENNEYFLNIETELSRPMQSSGAS---TISSNKTKSRVKITQGKSLKI 409 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + IQ +P LSKIP+LG LF +S I Sbjct: 410 TDIGHQGIQHQNTSLPYLSKIPLLGKLFTSSSEIETYKNI 449 >gi|253990257|ref|YP_003041613.1| piln (lipoprotein) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781707|emb|CAQ84870.1| piln (lipoprotein) [Photorhabdus asymbiotica] Length = 533 Score = 83.9 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 87/257 (33%), Gaps = 26/257 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 K ++ N QV L V I + D Q G S+ S+ + Sbjct: 285 KDYIDQQNKLLTTQVVLNVKILNLMFDRADQYGVDWSLAYKSAHIG--VGGEGSSAVDGS 342 Query: 242 GGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 G ++ + FS ++ AL + + +P++T ++ Q+ Q Y S Sbjct: 343 GISTNIHILKGPFSDSTLLIKALSAQGKVSIVTQPSVTTLNLQAVPMQVATQTGYVASIS 402 Query: 301 STGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNA 345 +T V T G + P ++ +I L+ +S+ Sbjct: 403 NTSTPQVGTSVGIEPATVTTGFNMLMLPYAMADKQILLQYNISLSDLKRLEKFGKEETGQ 462 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS--KIPILGALFRNSRF 403 +P+ +R V L SG T+VL+G + + G L LG + Sbjct: 463 VQLPTVDLRAFSQKVRLHSGETLVLSGFEQQSDASDRSG---LGSPDNQFLG---GSREG 516 Query: 404 NREETEIFIAATPFLVK 420 R I + TP +V Sbjct: 517 KRNHNVIVVMITPIVVD 533 >gi|167573379|ref|ZP_02366253.1| type IV pilus biogenesis protein PilN, putative [Burkholderia oklahomensis C6786] Length = 411 Score = 83.9 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 81/249 (32%), Gaps = 25/249 (10%) Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 N A QV L VT+ V G S+ + F ++ + S Sbjct: 160 NRALSRQVLLNVTVLSVSLSAGDAYGIDWSLVYHTLSAKFGIVNAFKPVSLTPTAELSAT 219 Query: 249 GVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 + F ++ AL + +R ++ ++ Q Q Y S+T Sbjct: 220 VLSPTSRFNGTSLLIRALSQQGQVRRKTSASVMTLNNQPVPVQVATQVGYLASVSTTNTA 279 Query: 306 SVTTHDY--------GVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGD----- 347 +V + G + P VL G + L+ T +S + V G Sbjct: 280 NVGSSTALTPGSVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLALKNVASSTGGGAMQIQ 339 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P +R V + SG T+V++G + + G+ P + AL R Sbjct: 340 TPDIDMRNFLQRVAMKSGETLVISGYEGTNDSLDERGV----GAPKMIALGGGYEAQRAR 395 Query: 408 TEIFIAATP 416 I I TP Sbjct: 396 EVIVILITP 404 >gi|281356728|ref|ZP_06243219.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316855|gb|EFB00878.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 627 Score = 83.9 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL-PSGGTIV 369 ++G L TP V + +++ + ++G P +T++++ GG Sbjct: 472 EFGFTLELTPEVNTEAS-QIKVAMS-NTNLLGFKGNGEPRTSETVLNTSLQMANDGGVFY 529 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429 + GL K + + +P L IP LG +F + ++T+I T V P D Sbjct: 530 IGGLEKSALVRSVSKVPFLGDIPFLGWVFAGESESVKKTQIVAVLTVVPVTPDTPVDARL 589 Query: 430 PDD 432 D+ Sbjct: 590 RDE 592 >gi|218711163|ref|YP_002418783.1| putative type IV pilus outer membrane secretin lipoprotein [Escherichia coli ED1a] gi|218349946|emb|CAQ87357.1| putative type IV pilus outer membrane secretin lipoprotein [Escherichia coli ED1a] Length = 539 Score = 83.6 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 85/263 (32%), Gaps = 19/263 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 N + + + N + QV L V I +R+ +Q G + S S Sbjct: 281 TDNPQVLETVRAFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLG 340 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + F G + L AL + + + + + Sbjct: 341 STFTGAASDAITGGVSIVDGKLTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIAN 400 Query: 292 QHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEV 336 Q Y ++ +V T G + P +L + L + + Sbjct: 401 QQSYIESVTTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVI 460 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 G + +P+ ++ + TV+L SG T++++G + + K+G+ P Sbjct: 461 ENYESGGSKAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFG 516 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 L ++T + + TP ++ Sbjct: 517 LGGGINSENDDTILVVLITPNII 539 >gi|330883499|gb|EGH17648.1| general secretion pathway protein D [Pseudomonas syringae pv. glycinea str. race 4] Length = 98 Score = 83.6 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 SG T++L GL+K D + +P L +IP L LF N+ ++ TE+ + TP ++ Sbjct: 10 AKSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI-- 67 Query: 422 VAMRDLSRPDDHYSVE 437 + + D Y + Sbjct: 68 TSSSQARQVTDDYRQQ 83 >gi|172064947|ref|YP_001815659.1| type IVB pilus formation outer membrane protein [Burkholderia ambifaria MC40-6] gi|171997189|gb|ACB68106.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia ambifaria MC40-6] Length = 577 Score = 83.2 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 71/219 (32%), Gaps = 16/219 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--KFVS 240 + M+ N QV + VT+ V G + G F + S Sbjct: 327 EFMDQQNRVLARQVLINVTVLSVTLSAADSYGINWHAVYQALGTQFGITTAFTSMIQNPS 386 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 E + S V+ AL + ++T ++ Q Q Y S Sbjct: 387 ELSASVITPSSRASSTTAVIDALSTQGTVHRKTSASITTLNDQPVPVQVAEQQGYLAQIS 446 Query: 301 STGATSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAG 346 +T ++ T G L P +L G I ++ + +S V Sbjct: 447 TTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDGTIMMQFYSNISSLVNLAPFGPANQQI 506 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +P+ R + + SG T+V++G Q ++G+ Sbjct: 507 QLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQDNRQGV 545 >gi|161617498|ref|YP_001591463.1| hypothetical protein SPAB_05357 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161366862|gb|ABX70630.1| hypothetical protein SPAB_05357 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 557 Score = 83.2 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 85/251 (33%), Gaps = 27/251 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT-------GSSSGPSKSFAADFGGKFVSEGGDF 245 QV L + I V + +Q+G + G++ S + A+ G D Sbjct: 311 SRQVQLNIQIVSVNQTRNEQLGLDWGLVYKSLHNFGATLTGSMANASTSAGSAGISILDT 370 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302 + ++ AL + T + ++ Q T SSST Sbjct: 371 ATGNAAKFSGSSLLIKALSEQGNVSMALNQTDPTANLTPVAYQLSNQQGVLTSSSSTATA 430 Query: 303 -----GATSVTTHDYGVVLHFTPTVLSPGRIGLRI--------QTEVSEPVIGVNAGDMP 349 + +VTT G+ + P + G + L+ Q E G D+P Sbjct: 431 NVGVTSSQTVTTITTGLFMTMLPFIQENGDVQLQFAFSYTSPPQIEKFISRDGNTRNDIP 490 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + V L SG T+VL G + ++ K+G ILG R Sbjct: 491 NTSTQGLARKVNLRSGQTLVLTGSEQQNLSANKQGT-FTPDNFILG---GGQNGTRGRNT 546 Query: 410 IFIAATPFLVK 420 + I TP L++ Sbjct: 547 LVIMITPVLLR 557 >gi|91791253|ref|YP_552203.1| type II and III secretion system protein [Polaromonas sp. JS666] gi|91701134|gb|ABE47305.1| type II and III secretion system protein [Polaromonas sp. JS666] Length = 556 Score = 83.2 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 45/319 (14%), Positives = 106/319 (33%), Gaps = 50/319 (15%) Query: 121 AHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 LE +++ ++++ + + T+ + T ++ + + Sbjct: 265 TALESGIKQMLSNAGKVSASPATGTITVT---DTPAVMEKVADFV--------------T 307 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + + +N L V++ V + V G ++ + ++ F Sbjct: 308 AQNQALNRL-------VSVNVRVLSVEISEGDDYGINWDAVYANLSAANPYSLALKTAFP 360 Query: 240 SEGGDFSVKGVLDRFS------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 + G ++ S +L AL + L TL ++ Q A G + Sbjct: 361 TATGAGNLIISAPAGSNSRWAGSSAMLSALSMQGRVSELTSATLVTLNNQPAPVNVGRKV 420 Query: 294 LYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGR------IGLRIQTEVSEP 339 Y SS T +V + G + P ++ + L +++ Sbjct: 421 SYLASSSQTQTANVGSTVSLTPGVIQTGFSMTIVPHIIDGNELLLQYSLDLSSLLKLNTI 480 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399 G ++ P V L SG T+V+AG +D++ + G+ ++ +LG Sbjct: 481 SSGTSSIQAPDVATSNFIQRVRLKSGETLVVAGFDQDNLTAVANGV-GAAENKLLG---- 535 Query: 400 NSRFNREETEIFIAATPFL 418 + + + + + P + Sbjct: 536 SRTGSTKRQILVVLIQPNI 554 >gi|167566274|ref|ZP_02359190.1| type IV pilus biogenesis protein PilN, putative [Burkholderia oklahomensis EO147] Length = 409 Score = 83.2 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 79/245 (32%), Gaps = 25/245 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G S+ + F ++ + S + Sbjct: 162 SRQVLLNVTVLSVSLSAGDAYGIDWSLVYHTLSAKFGIVNAFKPVSLTPTAELSATVLSP 221 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++ ++ Q Q Y S+T +V + Sbjct: 222 TSRFNGTSLLIRALSQQGQVRRKTSASVMTLNNQPVPVQVATQVGYLASVSTTNTANVGS 281 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGD-----MPSY 351 G + P VL G + L+ T +S + V G P Sbjct: 282 STALTPGSVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLALKNVASSTGGGAMQIQTPDI 341 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 342 DMRNFLQRVAMKSGETLVISGYEGTNDSLDERGV----GAPKMIALGGGYEAQRAREVIV 397 Query: 412 IAATP 416 I TP Sbjct: 398 ILITP 402 >gi|50119484|ref|YP_048651.1| putative type IV pilus protein [Pectobacterium atrosepticum SCRI1043] gi|49610010|emb|CAG73449.1| putative Type IV pilus protein [Pectobacterium atrosepticum SCRI1043] Length = 554 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 88/255 (34%), Gaps = 23/255 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239 + ++ LN+ V L V++ V+R Q S+ G A V Sbjct: 306 ESYIDSLNVRMNRMVKLMVSVYSVQRKGSSQTSLDWSVVGKRLDRFGLTLAGTPTATTAV 365 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S G V G + + ALE + + T + A F GQ +Y Sbjct: 366 SSAGINVVDGKFAGTT--ALFRALETQGKVSVVMAHEATTTNLVPAPFQIAGQMVYLRSQ 423 Query: 300 SSTGATSVTTHD-------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVN 344 ++ + + T D G + P + G I L+ S+P G Sbjct: 424 KTSVSENYATTDMEPGSITTGTQMTLLPDIRDEGDIQLQFNFSHSDPAQLRKESSKDGNT 483 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +MP VR V L G T++++G ++ +EG + + G Sbjct: 484 KMEMPYTTVRSLSERVNLKPGQTLIVSGYNSRNLTASREGA-FDPDVTVAG---GGKSSE 539 Query: 405 REETEIFIAATPFLV 419 ++ + IA TP L+ Sbjct: 540 TDDVTLIIAVTPVLM 554 >gi|191166277|ref|ZP_03028110.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli B7A] gi|317054603|ref|YP_004119670.1| PilN [Escherichia coli] gi|51038809|gb|AAT94189.1| PilN [Escherichia coli] gi|190903704|gb|EDV63420.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli B7A] gi|284433134|gb|ADB84873.1| PilN [Escherichia coli] gi|323974480|gb|EGB69607.1| R64 PilN family protein type IVB pilus formation outer membrane protein [Escherichia coli TW10509] Length = 539 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 23/255 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239 + + N + QV L V I +R+ +Q G + S S + F Sbjct: 291 RTFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDT 350 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 GG V G L + L AL + + + + Q Y Sbjct: 351 VTGGVSIVNGKLTGS--KAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESV 408 Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVN 344 ++ +V T G + P +L + L + + G + Sbjct: 409 TTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGS 468 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ ++ + TV+L SG T++++G + + K+G+ P L Sbjct: 469 KAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSE 524 Query: 405 REETEIFIAATPFLV 419 ++T + + TP ++ Sbjct: 525 NDDTILVVLITPNII 539 >gi|305667882|ref|YP_003864356.1| type IV pilus formation outer membrane protein [Escherichia coli] gi|304655631|emb|CBM42300.1| type IV pilus formation outer membrane protein [Escherichia coli] gi|333011616|gb|EGK31029.1| type IVB pilus formation outer membrane protein, R64 PilN family [Shigella flexneri K-227] gi|333011730|gb|EGK31139.1| type IVB pilus formation outer membrane protein, R64 PilN family [Shigella flexneri K-227] Length = 539 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 23/255 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239 + + N + QV L V I +R+ +Q G + S S + F Sbjct: 291 RTFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDT 350 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 GG V G L + L AL + + + + Q Y Sbjct: 351 VTGGVSIVNGKLTGS--KAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESV 408 Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVN 344 ++ +V T G + P +L + L + + G + Sbjct: 409 TTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGS 468 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ ++ + TV+L SG T++++G + + K+G+ P L Sbjct: 469 KAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSE 524 Query: 405 REETEIFIAATPFLV 419 ++T + + TP ++ Sbjct: 525 NDDTILVVLITPNII 539 >gi|167840260|ref|ZP_02466944.1| type IV pilus biogenesis protein PilN, putative [Burkholderia thailandensis MSMB43] Length = 423 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 80/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G S+ + + F ++ D S + Sbjct: 175 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTNPADLSATVLSP 234 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307 F ++ AL + +R ++T ++ Q Q Y S+T +V Sbjct: 235 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 294 Query: 308 ------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-----------IGVNAGDMPS 350 T G + P VL G + L+ T +S + G P Sbjct: 295 STALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVSSSTGGSGAARIQTPD 354 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 355 VDMRNFLQRVAMKSGETLVISGYEGTNDSLDERGV----GTPKMIALGGGYEAQRAREVI 410 Query: 411 FIAATP 416 I TP Sbjct: 411 VILITP 416 >gi|300993702|ref|ZP_07180511.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 200-1] gi|300305068|gb|EFJ59588.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 200-1] Length = 539 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 23/255 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239 + + N + QV L V I +R+ +Q G + S S + F Sbjct: 291 RTFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDT 350 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 GG V G L + L AL + + + + Q Y Sbjct: 351 VTGGVSIVNGKLTGS--KAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESV 408 Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVN 344 ++ +V T G + P +L + L + + G + Sbjct: 409 TTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGS 468 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ ++ + TV+L SG T++++G + + K+G+ P L Sbjct: 469 KAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSE 524 Query: 405 REETEIFIAATPFLV 419 ++T + + TP ++ Sbjct: 525 NDDTILVVLITPNII 539 >gi|168770541|ref|ZP_02795548.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli O157:H7 str. EC4486] gi|226201055|ref|YP_002756667.1| type IVB pilus formation outer membrane protein [Escherichia coli] gi|309783663|ref|ZP_07678313.1| type IVB pilus formation outer membrane protein, R64 PilN family [Shigella dysenteriae 1617] gi|189360515|gb|EDU78934.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli O157:H7 str. EC4486] gi|219881684|gb|ACL52054.1| type IVB pilus formation outer membrane protein [Escherichia coli] gi|308928559|gb|EFP74016.1| type IVB pilus formation outer membrane protein, R64 PilN family [Shigella dysenteriae 1617] gi|324010812|gb|EGB80031.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 60-1] Length = 539 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 23/255 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239 + + N + QV L V I +R+ +Q G + S S + F Sbjct: 291 RTFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDT 350 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 GG V G L + L AL + + + + Q Y Sbjct: 351 VTGGVSIVNGKLTGS--KAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESV 408 Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVN 344 ++ +V T G + P +L + L + + G + Sbjct: 409 TTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGS 468 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ ++ + TV+L SG T++++G + + K+G+ P L Sbjct: 469 KAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSE 524 Query: 405 REETEIFIAATPFLV 419 ++T + + TP ++ Sbjct: 525 NDDTILVVLITPNII 539 >gi|90411855|ref|ZP_01219863.1| putative type II protein secretion system D protein [Photobacterium profundum 3TCK] gi|90327113|gb|EAS43485.1| putative type II protein secretion system D protein [Photobacterium profundum 3TCK] Length = 438 Score = 82.4 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 52/373 (13%), Positives = 121/373 (32%), Gaps = 62/373 (16%) Query: 75 TKADVVVHSPRTMYLFGKNVG-----------QANVILIGHDG----KQMLNLDILIERD 119 T D + + + + + K G N+ + ++ N I + +D Sbjct: 93 TIVDSKIDTKQRV-IINKYDGDLKSLISAVSENTNLTFEQKNEILYITELKNYKIKVVQD 151 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179 + I + +E + D + + + S A +F S + S Sbjct: 152 --------KEIIDAVKLELEKLEDEI------KELVVSDTA--GVFSFKSDYKTFKKIES 195 Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 K + N ++ + + +++ V GF + S + G Sbjct: 196 IIKDINNNTSL-----INIDLSLINVEIKESDGNGFDWKTLNILANLDGSEMLNNGFSLT 250 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S G + G F+F V++AL + ++ +SG+ A + + Y Sbjct: 251 S-GNRLGITG--KNFNFSLVMNALNEYGQTEAIQNTSIKTLSGKEAVLKTTERTPYIDKI 307 Query: 300 SSTGATSVTTH-------DYGVVLHFTPTVLSPGRI-GLRIQTEVSEPVIGVNAG----- 346 T + G+ L P ++ +++ + S +N Sbjct: 308 EIMNNGEFTEKGFTTSETETGLELKILPYFDKDSKMLNIKVDLKNSSLKGFLNVSNDDFE 367 Query: 347 -DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 + P+ ++ ++ V + +G T V+ GL+ + I + ++++ Sbjct: 368 LNQPNTEEQEFNSVVRIRAGETSVIGGLIYYKQNKSGNNI--------FNEITQSNKKEF 419 Query: 406 EETEIFIAATPFL 418 + +FI P + Sbjct: 420 SKNALFILIRPTV 432 >gi|73853185|ref|YP_308681.1| pillus assembly protein [Escherichia coli] gi|33414103|gb|AAL18829.2| Pillus assembly protein [Escherichia coli] Length = 539 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 84/263 (31%), Gaps = 19/263 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 N + + + N + QV L V I +R+ +Q G + S S Sbjct: 281 TDNPQVLETVRAFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLG 340 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + F + L AL + + + + + Sbjct: 341 STFTSAASDAITGGVSIVDGKLTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIAN 400 Query: 292 QHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEV 336 Q Y ++ +V T G + P +L + L + + Sbjct: 401 QQSYIESVTTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVI 460 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 G + +P+ ++ + TV+L SG T++++G + + K+G+ P Sbjct: 461 ENYESGGSKAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFG 516 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 L ++T + + TP ++ Sbjct: 517 LGGGINSENDDTILVVLITPNII 539 >gi|331680850|ref|ZP_08381490.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli H299] gi|331081838|gb|EGI52996.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli H299] Length = 539 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 84/263 (31%), Gaps = 19/263 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 N + + + N + QV L V I +R+ +Q G + S S Sbjct: 281 TDNPQVLETVRAFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLG 340 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + F + L AL + + + + + Sbjct: 341 STFTSAASDAITGGVSIVDGKLTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIAN 400 Query: 292 QHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEV 336 Q Y ++ +V T G + P +L + L + + Sbjct: 401 QQSYIESVTTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVI 460 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 G + +P+ ++ + TV+L SG T++++G + + K+G+ P Sbjct: 461 ENYESGGSKAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFG 516 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 L ++T + + TP ++ Sbjct: 517 LGGGINSENDDTILVVLITPNII 539 >gi|257142072|ref|ZP_05590334.1| type IV pilus biogenesis protein PilN, putative [Burkholderia thailandensis E264] Length = 586 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 58/318 (18%), Positives = 105/318 (33%), Gaps = 49/318 (15%) Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L+ ++ ++ V + + ++ D+ +E F++Q R+ Sbjct: 289 NGLQSAIQSMLSRYGSSVSSPATGSI------SVTDTPDVLERVAAFMTQQNRSL----- 337 Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 QV L VT+ V G S+ + + F ++ Sbjct: 338 ------------SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLT 385 Query: 241 EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + D S + F ++ AL + +R ++T ++ Q Q Y Sbjct: 386 KPADLSATVLSPTSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLA 445 Query: 298 VSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQT---------EVSEPV 340 S+T +V + G + P VL G + L+ T EVS Sbjct: 446 SVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSST 505 Query: 341 IGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 G +A + P +R V + SG T+V++G + + G+ P + AL Sbjct: 506 GGRSAARIQTPDVDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALG 561 Query: 399 RNSRFNREETEIFIAATP 416 R I I TP Sbjct: 562 GGYEAQRAREVIVILITP 579 >gi|170698379|ref|ZP_02889453.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia ambifaria IOP40-10] gi|170136718|gb|EDT04972.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia ambifaria IOP40-10] Length = 577 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 70/219 (31%), Gaps = 16/219 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--KFVS 240 + M N QV + VT+ V G + G F + S Sbjct: 327 EFMEQQNRVLARQVLINVTVLSVTLSAADSYGINWHAVYQALGTQFGITTAFTSMIQNPS 386 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 E + S V+ AL + ++T ++ Q Q Y S Sbjct: 387 ELSASVITPSSRASSTTAVIDALSTQGTVHRKTSASITTLNDQPVPVQVAEQQGYLAQIS 446 Query: 301 STGATSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAG 346 +T ++ T G L P +L G I ++ + +S V Sbjct: 447 TTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDGTIMMQFYSNISSLVNLVPFGPANQQI 506 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +P+ R + + SG T+V++G Q ++G+ Sbjct: 507 QLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQDNRQGV 545 >gi|297520545|ref|ZP_06938931.1| general secretion pathway protein D precursor [Escherichia coli OP50] Length = 111 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 L GL+ D + +PLL IP++G LF+++ +E+ + + P +++ D Sbjct: 1 LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAAD 57 >gi|254262815|ref|ZP_04953680.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 1710a] gi|254213817|gb|EET03202.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 1710a] Length = 589 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 341 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 400 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 401 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 460 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350 G + P VL G + L+ T +S V G P Sbjct: 461 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 520 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 521 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 576 Query: 411 FIAATP 416 I TP Sbjct: 577 VILITP 582 >gi|126668015|ref|ZP_01738979.1| hypothetical protein MELB17_09748 [Marinobacter sp. ELB17] gi|126627525|gb|EAZ98158.1| hypothetical protein MELB17_09748 [Marinobacter sp. ELB17] Length = 498 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 20/249 (8%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + +N QV L++ A V + + ++ F VS + Sbjct: 250 IEDINDVYGRQVHLQIRTASVTVENANDFNLTWNNILNTVNNGD-FDVGLNSAAVSTAAN 308 Query: 245 FSVKGVL-DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 ++ V+ L L + T + E ++T +S Q AS + Y + S Sbjct: 309 PNILNVIRTSTGASLALEMLAQETESTEINEQSVTTLSNQPASLKVLSETGYISGISQQE 368 Query: 304 AT----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYR 352 + VTT G P V+S + L++ E+S + +N + Sbjct: 369 TSGDLNNVISDVEVTTITTGFDATLVPRVVSDSVLQLQVALELSNNLQLINFDSTIVQTP 428 Query: 353 VRKADTTVE---LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 R +T V+ L +G T +LA + G G L + + + Sbjct: 429 TRNRNTVVQRAWLRNGETWILAAFNSEKTTNKISGT---GSAGFWG-LGGGTSKSNNQQV 484 Query: 410 IFIAATPFL 418 + I TP + Sbjct: 485 LLIMITPHI 493 >gi|226198442|ref|ZP_03794010.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei Pakistan 9] gi|225929499|gb|EEH25518.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei Pakistan 9] Length = 590 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 342 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 401 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 402 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 461 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350 G + P VL G + L+ T +S V G P Sbjct: 462 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 521 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 522 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 577 Query: 411 FIAATP 416 I TP Sbjct: 578 VILITP 583 >gi|70732014|ref|YP_261759.1| type IV pilus protein, PilN [Pseudomonas fluorescens Pf-5] gi|68346313|gb|AAY93919.1| type IV pilus protein, PilN [Pseudomonas fluorescens Pf-5] Length = 613 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 80/271 (29%), Gaps = 30/271 (11%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLL-------NIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 + S +V+N + N QV V I EV Q Sbjct: 296 AGRIFLSRSTGTLTVSDRPEVLNRIASYLQSTNRNITRQVLFNVKIFEVNFTDRDQTAVN 355 Query: 217 H-----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 S++G + A +S V+ AL I Sbjct: 356 WKAVYKSVSGRWGLSLANKVAGISTDAISGSVSILDTSSSPWAGSSAVIQALSEQGRISD 415 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTTHDYGVVLHFTPTVL 323 + P++T ++ Q A G Y SS+T + T G + P ++ Sbjct: 416 VRSPSITTLNLQPAPIQIGNVKSYVASSSTTTTASVGSSTSLTPATITSGFNMMLLPKII 475 Query: 324 SPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377 + L I +S ++ + + A V L SG T+VL G ++ Sbjct: 476 DRDNMLLMISISMSSKPTFTTFTSNGSSVQTADFDTKNAAPKVLLRSGQTLVLTGFEENT 535 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREET 408 K G+ G L + + + + Sbjct: 536 ENADKTGV---GDASFFG-LGGSRTRSSDHS 562 >gi|115360623|ref|YP_777760.1| type IVB pilus formation outer membrane protein [Burkholderia ambifaria AMMD] gi|115285951|gb|ABI91426.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia ambifaria AMMD] Length = 577 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 70/219 (31%), Gaps = 16/219 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--KFVS 240 + M N QV + VT+ V G + G F + S Sbjct: 327 EFMEQQNRVLARQVLINVTVLSVTLSAADSYGINWHAVYQALGTQFGITTAFTSMIQNPS 386 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 E + S V+ AL + ++T ++ Q Q Y S Sbjct: 387 ELSASVITPSSRASSTTAVIDALSTQGTVHRKTSASITTLNDQPVPVQVAEQQGYLAQIS 446 Query: 301 STGATSVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAG 346 +T ++ T G L P +L G I ++ + +S V Sbjct: 447 TTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDGTIMMQFYSNISSLVNLVPFGPANQQI 506 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +P+ R + + SG T+V++G Q ++G+ Sbjct: 507 QLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQDNRQGV 545 >gi|53722623|ref|YP_111608.1| type IV pilus biosynthesis protein [Burkholderia pseudomallei K96243] gi|52213037|emb|CAH39075.1| putative type IV pilus biosynthesis protein [Burkholderia pseudomallei K96243] Length = 589 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 341 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 400 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 401 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 460 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350 G + P VL G + L+ T +S V G P Sbjct: 461 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 520 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 521 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 576 Query: 411 FIAATP 416 I TP Sbjct: 577 VILITP 582 >gi|53716205|ref|YP_106188.1| putative type IV pilus biogenesis protein PilN [Burkholderia mallei ATCC 23344] gi|124381791|ref|YP_001025775.1| type IVB pilus formation outer membrane protein [Burkholderia mallei NCTC 10229] gi|126447055|ref|YP_001077859.1| type IVB pilus formation outer membrane protein [Burkholderia mallei NCTC 10247] gi|126457943|ref|YP_001076206.1| type IVB pilus formation outer membrane protein [Burkholderia pseudomallei 1106a] gi|167003979|ref|ZP_02269757.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei PRL-20] gi|237509279|ref|ZP_04521994.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei MSHR346] gi|242311526|ref|ZP_04810543.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 1106b] gi|254205031|ref|ZP_04911384.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei JHU] gi|254359153|ref|ZP_04975425.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei 2002721280] gi|52422175|gb|AAU45745.1| putative type IV pilus biogenesis protein PilN [Burkholderia mallei ATCC 23344] gi|126231711|gb|ABN95124.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 1106a] gi|126239909|gb|ABO03021.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei NCTC 10247] gi|147754617|gb|EDK61681.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei JHU] gi|148028340|gb|EDK86300.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei 2002721280] gi|235001484|gb|EEP50908.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei MSHR346] gi|242134765|gb|EES21168.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 1106b] gi|243060570|gb|EES42756.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei PRL-20] gi|261826504|gb|ABM99280.2| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei NCTC 10229] Length = 590 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 342 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 401 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 402 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 461 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350 G + P VL G + L+ T +S V G P Sbjct: 462 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 521 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 522 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 577 Query: 411 FIAATP 416 I TP Sbjct: 578 VILITP 583 >gi|134282150|ref|ZP_01768856.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 305] gi|134246679|gb|EBA46767.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 305] Length = 589 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 341 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 400 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 401 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 460 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350 G + P VL G + L+ T +S V G P Sbjct: 461 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 520 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 521 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 576 Query: 411 FIAATP 416 I TP Sbjct: 577 VILITP 582 >gi|254194313|ref|ZP_04900745.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei S13] gi|254301386|ref|ZP_04968830.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 406e] gi|157811498|gb|EDO88668.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 406e] gi|169651064|gb|EDS83757.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei S13] Length = 590 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 342 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 401 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 402 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 461 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350 G + P VL G + L+ T +S V G P Sbjct: 462 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 521 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 522 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 577 Query: 411 FIAATP 416 I TP Sbjct: 578 VILITP 583 >gi|254186932|ref|ZP_04893448.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei Pasteur 52237] gi|157934616|gb|EDO90286.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei Pasteur 52237] Length = 590 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 342 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 401 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 402 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 461 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350 G + P VL G + L+ T +S V G P Sbjct: 462 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 521 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 522 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 577 Query: 411 FIAATP 416 I TP Sbjct: 578 VILITP 583 >gi|126443441|ref|YP_001063251.1| type IVB pilus formation outer membrane protein [Burkholderia pseudomallei 668] gi|126222932|gb|ABN86437.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 668] Length = 590 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 342 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 401 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 402 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 461 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350 G + P VL G + L+ T +S V G P Sbjct: 462 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 521 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 522 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 577 Query: 411 FIAATP 416 I TP Sbjct: 578 VILITP 583 >gi|294784349|ref|ZP_06749640.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27] gi|294487921|gb|EFG35276.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27] Length = 127 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 12/110 (10%) Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------------RKADTTVELPSGGTI 368 + I L I E+S+ N ++ R T V + +G TI Sbjct: 16 VIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKVRVKNGDTI 75 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +L GL K Q ++ IP+L IPI+ F+N+ E ++++I + Sbjct: 76 LLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYIKLKVEI 125 >gi|218534703|ref|YP_002424465.1| PilN protein [Yersinia pseudotuberculosis] gi|218473172|emb|CAQ76600.1| PilN protein [Yersinia pseudotuberculosis] Length = 543 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 94/256 (36%), Gaps = 19/256 (7%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + +N N QV L V + V + Q+G + +S S + F Sbjct: 292 AVNTYINDRNTELNRQVVLNVKVYSVEKRRQDQLGIDWNAVFTSGSIGGSLTSAFTEAST 351 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S + + ++AL + + + T + + G Q Y + Sbjct: 352 SAMTGGLSILDGKFANSKAFVNALAEQANVSLVTQQASTTTNMSAVPVQVGTQQDYASQV 411 Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEP------VIGVN 344 ++ +V +T G + P ++ +I L+ +S+ G + Sbjct: 412 NTDSTANVGTSTSITKSTITTGFNMTMLPYIMPKSSQIQLQFSINMSDDPTSRTFTSGES 471 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 + ++ R++ + V L SG T+VL+G + + K+G+ G L + Sbjct: 472 SIELMKTRLKTFNQRVILSSGQTLVLSGFQQVNNTGSKQGV---GSASFFG-LGGGANGQ 527 Query: 405 REETEIFIAATPFLVK 420 +++T + I TP L++ Sbjct: 528 KDDTMLVILITPTLLR 543 >gi|300940175|ref|ZP_07154781.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 21-1] gi|300455011|gb|EFK18504.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 21-1] Length = 410 Score = 81.2 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 23/255 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239 + + N + QV L V I +R+ +Q G + S S + F Sbjct: 162 RTFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDT 221 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 GG V G L + L AL + + + + Q Y Sbjct: 222 VTGGVSIVNGKLTGS--KAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESV 279 Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVN 344 ++ +V T G + P +L + L + + G + Sbjct: 280 TTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGS 339 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ ++ + TV+L SG T++++G + + K+G+ P L Sbjct: 340 KAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSE 395 Query: 405 REETEIFIAATPFLV 419 ++T + + TP ++ Sbjct: 396 NDDTILVVLITPNII 410 >gi|254253693|ref|ZP_04947010.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] gi|124898338|gb|EAY70181.1| Type II secretory pathway component PulD [Burkholderia dolosa AUO158] Length = 578 Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 69/219 (31%), Gaps = 16/219 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--KFVS 240 + M N QV + VT+ V G + G F + S Sbjct: 328 EFMEQQNRVLARQVLINVTVLSVTLSAQDSYGINWHAVYQALGTQFGITTAFTSMIQNPS 387 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 E + S ++ AL + ++T ++ Q Q Y S Sbjct: 388 ELSATVITPSSRASSTTAIIDALSTQGTVHRKTSASITTLNDQPVPVQVAEQQGYLAQIS 447 Query: 301 STGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAG 346 +T ++ T G L P +L G I ++ + +S V Sbjct: 448 TTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDGTIMMQFYSNISSLVNLVPFGPANQQI 507 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 +P+ R + + SG T+V++G ++G+ Sbjct: 508 QLPTVDTRNFLQRIAVKSGQTLVISGYEGITDLDNRQGV 546 >gi|301030047|ref|ZP_07193001.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 196-1] gi|299877181|gb|EFI85392.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 196-1] Length = 403 Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 23/255 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239 + + N + QV L V I +R+ +Q G + S S + F Sbjct: 155 RTFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDT 214 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 GG V G L + L AL + + + + Q Y Sbjct: 215 VTGGVSIVNGKLTGS--KAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESV 272 Query: 300 SSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVN 344 ++ +V T G + P +L + L + + G + Sbjct: 273 TTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGS 332 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +P+ ++ + TV+L SG T++++G + + K+G+ P L Sbjct: 333 KAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSE 388 Query: 405 REETEIFIAATPFLV 419 ++T + + TP ++ Sbjct: 389 NDDTILVVLITPNII 403 >gi|189424031|ref|YP_001951208.1| type II secretory pathway component PulD-like protein [Geobacter lovleyi SZ] gi|189420290|gb|ACD94688.1| Type II secretory pathway component PulD-like protein [Geobacter lovleyi SZ] Length = 510 Score = 80.5 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 27/214 (12%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 + F G F + G + ++ RFS + +E + + +SG+ Sbjct: 300 ATNLFEQGIGALFNTSGANLFMES--SRFSLSALFSFMENFGKYNVMQNVFVETMSGKKG 357 Query: 286 SFTSGGQHLYKT----------VSSSTGATSVTTHDYGVVLHFTPTVLSPGR---IGLRI 332 + Y + ++ +T GV++ FTP + I L++ Sbjct: 358 KIEIVTESPYVSEIGISSLSSTSGATAATAKTSTAKAGVIMDFTPYYNKKQQMLTINLKV 417 Query: 333 QTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 E + ++AG P + +T + + ++ GL+ + G+P Sbjct: 418 NVEGVNRYVTISAGSQLGSFMQPETTKKSVETFLRMKPEQVAIIGGLVYEMNDDNVNGLP 477 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 L +N +E+ E+ I P +++ Sbjct: 478 --GDT----YLTKNVTGKKEKEELVIVVKPTIIE 505 >gi|67639316|ref|ZP_00438187.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei GB8 horse 4] gi|238519853|gb|EEP83319.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia mallei GB8 horse 4] Length = 441 Score = 80.5 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 193 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 252 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 253 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 312 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350 G + P VL G + L+ T +S V G P Sbjct: 313 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 372 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 373 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 428 Query: 411 FIAATP 416 I TP Sbjct: 429 VILITP 434 >gi|281356848|ref|ZP_06243338.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316406|gb|EFB00430.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 574 Score = 80.5 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 79/287 (27%), Gaps = 67/287 (23%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---------KSFAADFGGKFVSEGGD 244 QV L + + EV + ++G ++ G ++AA + G G Sbjct: 266 PQVRLNIKVYEVYSENNDKMGIDFQSWKNNEGADFFSVGGRYRNNWAAAYSGGMARSFGS 325 Query: 245 FSVKGVLDRFSFETV-LHALERATAIRTLAEPTLTAISGQSASFT--------------- 288 + T L L + + L + SA + Sbjct: 326 ERTSFYNFNPKWNTRYLDFLASKGRAKVVHTGELCVRNNTSAQLSRTTQIFYIDTSKPVN 385 Query: 289 -----------SGGQHLYKTV----------------------------SSSTGATSVTT 309 SG V S G +TT Sbjct: 386 NAIIPGTTLDPSGNPFPDTGVGPYELLSGLAGKLFDKSIDKPGKDSADLSYGKGNQQITT 445 Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTT-VELPSG-G 366 G T S R ++ IG + P A T V LP G Sbjct: 446 AFTGFGFTMTVNNASVNLEETRFNVTLNNTSLIGFASNGTPRISKGNAVTQDVSLPHGKD 505 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 + V+ GL K + + + G+P L IP LG LF + E+ + Sbjct: 506 SFVIGGLRKQETVKSRTGVPWLMDIPYLGYLFSTESNSVRHAELIVV 552 >gi|261819950|ref|YP_003258056.1| type IVB pilus formation outer membrane protein, R64 PilN family [Pectobacterium wasabiae WPP163] gi|261603963|gb|ACX86449.1| type IVB pilus formation outer membrane protein, R64 PilN family [Pectobacterium wasabiae WPP163] Length = 554 Score = 80.5 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 87/255 (34%), Gaps = 23/255 (9%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--GGKFV 239 + ++ LN+ V L V++ V+R Q S+ A + Sbjct: 306 EGYIDNLNVRMNRMVKLMVSVYSVQRKGSSQTSLDWSVVAKRLDRFGLTLAGTPTATTSI 365 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S G + G + + ALE + + T + A F GQ +Y Sbjct: 366 SSAGINVIDGKFAGTT--ALFRALETQGKVSVVMAHEATTTNLVPAPFQIAGQMVYLRNQ 423 Query: 300 SSTGATSVTTHD-------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVN 344 +T + + T D G + P + G I L+ S+P G Sbjct: 424 KTTVSENYATTDMEPGSITTGTQMTLLPDIRDEGDIQLQFNFSHSDPAQLRKESSEDGRT 483 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 +MP VR V L G T++++G ++ +EG + + G Sbjct: 484 KMEMPYTTVRSLSERVNLRPGQTLIVSGYNSRNLTTSREGA-FDPDVTVAG---GGKSSE 539 Query: 405 REETEIFIAATPFLV 419 ++ + IA TP L+ Sbjct: 540 TDDVTLIIAVTPVLM 554 >gi|167743301|ref|ZP_02416075.1| hypothetical protein Bpse14_34822 [Burkholderia pseudomallei 14] Length = 403 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 155 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 214 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 215 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 274 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 275 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 334 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 335 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 390 Query: 411 FIAATP 416 I TP Sbjct: 391 VILITP 396 >gi|167615506|ref|ZP_02384141.1| type IV pilus biogenesis protein PilN, putative [Burkholderia thailandensis Bt4] Length = 417 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G S+ + + F +++ D S + Sbjct: 169 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTKPADLSATVLSP 228 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 229 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 288 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQT---------EVSEPVIGVNAGDM--PS 350 G + P VL G + L+ T EVS G +A + P Sbjct: 289 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSSTGGRSAARIQTPD 348 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 349 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 404 Query: 411 FIAATP 416 I TP Sbjct: 405 VILITP 410 >gi|300310142|ref|YP_003774234.1| type IVB pilus formation outer membrane protein [Herbaspirillum seropedicae SmR1] gi|300072927|gb|ADJ62326.1| type IVB pilus formation outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 602 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 39/264 (14%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----GSSSGPSKSFAADFGGKF 238 ++ N + Q+ + VT+ V Q G + S+ G + ++ Sbjct: 341 TYIDGENKSLSRQIAINVTVLSVTLSDDDQYGINWNAVYRSLNSTFGIANAYEGALSTGL 400 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295 VS G + V+ AL + +R ++ ++ Q Q Y Sbjct: 401 VSFTAGIPSSGTSGFSGSQAVIQALSQQGKVRRQTTASVVTLNNQPVPVQVARQTTYLQS 460 Query: 296 -------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIG 342 + ++++ V T G + P +L+ G + L+ T++S + Sbjct: 461 LQSSLVAQVGTTTSLTPGVVT--AGFNMSILPHMLTNGTVMLQFSTDISTLRRIRQITAS 518 Query: 343 VNAGD-------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP--- 392 ++ P R V + S T++++G + D + G+ P Sbjct: 519 TDSSGRATALIESPELDTRNFLQRVAMKSNETLIISGFEQTDENLGRSGV---GD-PKNL 574 Query: 393 ILGALFRNSRFNREETEIFIAATP 416 +LG + I + TP Sbjct: 575 LLG---GGVSAATNKEVIVVLITP 595 >gi|167820480|ref|ZP_02452160.1| hypothetical protein Bpse9_35477 [Burkholderia pseudomallei 91] Length = 411 Score = 80.1 bits (196), Expect = 8e-13, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 163 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 222 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 223 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 282 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 283 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 342 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 343 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 398 Query: 411 FIAATP 416 I TP Sbjct: 399 VILITP 404 >gi|167898912|ref|ZP_02486313.1| hypothetical protein Bpse7_34586 [Burkholderia pseudomallei 7894] Length = 417 Score = 80.1 bits (196), Expect = 8e-13, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 169 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 228 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 229 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 288 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 289 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 348 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 349 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 404 Query: 411 FIAATP 416 I TP Sbjct: 405 VILITP 410 >gi|167577356|ref|ZP_02370230.1| type IV pilus biogenesis protein PilN, putative [Burkholderia thailandensis TXDOH] Length = 425 Score = 80.1 bits (196), Expect = 8e-13, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G S+ + + F +++ D S + Sbjct: 177 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTKPADLSATVLSP 236 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 237 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 296 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQT---------EVSEPVIGVNAGDM--PS 350 G + P VL G + L+ T EVS G +A + P Sbjct: 297 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSSTGGRSAARIQTPD 356 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 357 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 412 Query: 411 FIAATP 416 I TP Sbjct: 413 VILITP 418 >gi|167907237|ref|ZP_02494442.1| hypothetical protein BpseN_33715 [Burkholderia pseudomallei NCTC 13177] Length = 419 Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 171 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 230 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 231 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 290 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 291 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 350 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 351 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 406 Query: 411 FIAATP 416 I TP Sbjct: 407 VILITP 412 >gi|167923443|ref|ZP_02510534.1| hypothetical protein BpseBC_33112 [Burkholderia pseudomallei BCC215] Length = 413 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 165 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 224 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 225 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 284 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 285 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 344 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 345 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 400 Query: 411 FIAATP 416 I TP Sbjct: 401 VILITP 406 >gi|167724338|ref|ZP_02407574.1| hypothetical protein BpseD_35290 [Burkholderia pseudomallei DM98] gi|167850311|ref|ZP_02475819.1| hypothetical protein BpseB_34040 [Burkholderia pseudomallei B7210] Length = 414 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 166 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 225 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 226 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 285 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 286 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 345 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 346 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 401 Query: 411 FIAATP 416 I TP Sbjct: 402 VILITP 407 >gi|167915601|ref|ZP_02502692.1| hypothetical protein Bpse112_34291 [Burkholderia pseudomallei 112] Length = 433 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 185 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 244 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 245 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 304 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 305 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 364 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 365 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 420 Query: 411 FIAATP 416 I TP Sbjct: 421 VILITP 426 >gi|167828852|ref|ZP_02460323.1| hypothetical protein Bpseu9_34514 [Burkholderia pseudomallei 9] Length = 415 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 167 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 226 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 227 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 286 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350 G + P VL G + L+ T +S E + P Sbjct: 287 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 346 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 347 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 402 Query: 411 FIAATP 416 I TP Sbjct: 403 VILITP 408 >gi|327412691|emb|CAX67687.1| putative Type IV pilus lipoprotein (PilN) [Yersinia enterocolitica] Length = 562 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 92/268 (34%), Gaps = 41/268 (15%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFG 235 + ++ N QV L V + V + +Q G + G+S + AAD Sbjct: 306 RYIDYQNELLNRQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINAADNA 365 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 D + E ++ AL + + + E I+ F Q Y Sbjct: 366 FSGGLSILDTATGPAAKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGY 425 Query: 296 KTVSS----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLR----------IQTE 335 SS S+ T + T G+ + P + G + L+ IQ Sbjct: 426 IQSSSTTATANAGTTSSMQTGIIT--TGLFMSMLPYIQENGDVQLQFAFTLSDKPTIQPF 483 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPI 393 S G D P++++R TV + +G T+VL G + D K+G P Sbjct: 484 FSHD--GNTRTDTPAFKLRSLTQTVNMRAGQTLVLTGADQLDSVANKQGAFTPG------ 535 Query: 394 LGALF-RNSRFNREETEIFIAATPFLVK 420 LF + T + I TP L++ Sbjct: 536 -NFLFGGGHVGSDTRTTLVILITPVLLR 562 >gi|171322813|ref|ZP_02911537.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia ambifaria MEX-5] gi|171091832|gb|EDT37330.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia ambifaria MEX-5] Length = 346 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 80/245 (32%), Gaps = 26/245 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G S+ + + F ++ GD S + Sbjct: 100 SRQVMLNVTVLSVSLKAGDAYGIDWSLVYKTVSAQFGISNPFTPAALTP-GDLSATVLSP 158 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307 F ++ AL + +R ++T ++ Q Q Y S+T +V Sbjct: 159 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 218 Query: 308 ------TTHDYGVVLHFTPTVLSPGRIGLRIQTEV----------SEPVIGVNAGDMPSY 351 T G + P VL G + L+ T + S G P Sbjct: 219 STALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKDVSSSTGSGATRIQTPDV 278 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 +R V + SG T+V++G + + GI P + AL R I Sbjct: 279 DMRNFLQRVAMKSGETLVISGYEGTNDSLDERGI----GTPKMIALGGGYEAQRSREVIV 334 Query: 412 IAATP 416 I TP Sbjct: 335 ILITP 339 >gi|327412973|emb|CAX67991.1| PilN (lipoprotein) [Salmonella enterica subsp. VII] Length = 560 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 82/258 (31%), Gaps = 26/258 (10%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 + N QV L V + V +Q+G +I S + + + G + Sbjct: 303 YVEQQNRQMNRQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDIANATS 362 Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 D + ++ AL + + + Q +Y Sbjct: 363 ASVSILDTATGNAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVA 422 Query: 298 VSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------- 341 SS+T T V G + P + G + L++ +S+P Sbjct: 423 QSSTTTTTDVGATTSLTPGMMTTGFNMTLLPLIQDDGDVQLQVAFNLSDPPTIRNFTSKD 482 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G + +MP ++R L +G +VL G + + + K G +LG Sbjct: 483 GNSYIEMPYTKLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGR 538 Query: 402 RFNREETEIFIAATPFLV 419 + + + I TP L+ Sbjct: 539 DGDDSRSTLVIIITPELM 556 >gi|37525036|ref|NP_928380.1| hypothetical protein plu1051 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784462|emb|CAE13346.1| pilN [Photorhabdus luminescens subsp. laumondii TTO1] Length = 567 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 50/264 (18%), Positives = 90/264 (34%), Gaps = 27/264 (10%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGG 236 S + + N QV L V + V +Q+G + +S G + S + G Sbjct: 308 SVSRYVEEQNTVLNRQVLLNVQVLSVSTSRKEQMGLDWGLVYNSLHNLGATLSGSFSGMG 367 Query: 237 KFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + G ++ + + ++ AL + + + Q Sbjct: 368 SGTTSAGVSILESATGKAAKLSGSSLLIKALSEQGNVSVVTSQGSATTNLTPIPIQMADQ 427 Query: 293 HLYKTVSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341 +Y SS+T AT V G + P + G + L++ +S+P Sbjct: 428 TVYVAQSSTTTATDVGATTALTPGMITTGFNMTLLPLIQRNGDVQLQVAFNLSDPPTIRS 487 Query: 342 -----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 G + +MP R+R V L +G +VL G + D + K G +LG Sbjct: 488 FTSKEGNSYIEMPYTRLRSLSQKVNLRAGQALVLTGFEQADTRVTKTGTFTPGNF-LLG- 545 Query: 397 LFRNSRFNREETEIFIAATPFLVK 420 + + + I TP L+ Sbjct: 546 --GGQSGENQRSTLVILITPVLLD 567 >gi|49658861|emb|CAF28487.1| putative lipoprotein [Yersinia pseudotuberculosis] Length = 530 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 91/266 (34%), Gaps = 37/266 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + ++ N QV L V + V + +Q G + S + A G ++ Sbjct: 274 RYIDHQNELLNRQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLN---NIGASVTGNLINAA 330 Query: 243 GDFSVKGVL----------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + G+ E ++ AL + + + E I+ F Q Sbjct: 331 NNTLSGGLSILDTATGPAEKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQ 390 Query: 293 HLYKTVSSST---GATSVTTHDYGVV-----LHFTPTVLSPGRIGLR----------IQT 334 Y SS+T A + ++ G++ + P + G + L+ IQ Sbjct: 391 TGYIQSSSTTVTANAGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPIIQP 450 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 S G D P++++R TV L +G T+VL G + D K+G S Sbjct: 451 FFSRD--GNTRNDTPAFKLRSLTQTVNLRAGQTLVLTGADQLDTVANKQGAFTPSNF--- 505 Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420 T + I TP L++ Sbjct: 506 -WWGGGHNGLETRTTLVILITPVLLR 530 >gi|261226370|ref|ZP_05940651.1| type IV pilus outer membrane secretin lipoprotein PilN [Escherichia coli O157:H7 str. FRIK2000] Length = 547 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 90/259 (34%), Gaps = 27/259 (10%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S ++++N N QV L V I +++ +Q G + + S FG Sbjct: 285 SVQEIVNKRNNEMSRQVVLNVEILSIKKSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAE 344 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA---------ISGQSASFTSG 290 + + L AL ++ + + + I+ Q S Sbjct: 345 NVITSGVSIVDGKLAGSKAFLKALSSQGSVSVVTQNSAVTKNLTPVPMQIANQQGFIESV 404 Query: 291 GQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVI 341 V SST A ++TT G + P + + L + Sbjct: 405 TTDSTANVGSSTSLNAATITT---GFNMTLLPYIQPDSQNLQLLFSMSLSDKPTFEVFES 461 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI-PILGALFRN 400 G + P+ ++ + T++L SG T++L+G + + + K+G+ I P L Sbjct: 462 GGSKAQTPNVDLKTINQTIDLKSGQTVILSGFQQSNRKTSKQGV-----ITPSFFGLGGG 516 Query: 401 SRFNREETEIFIAATPFLV 419 +T + + TP ++ Sbjct: 517 INSEDGDTILVVLITPNVL 535 >gi|160902548|ref|YP_001568129.1| hypothetical protein Pmob_1087 [Petrotoga mobilis SJ95] gi|160360192|gb|ABX31806.1| hypothetical protein Pmob_1087 [Petrotoga mobilis SJ95] Length = 694 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 9/164 (5%) Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310 L F+ +++ +++P + G AS S V+ Sbjct: 526 LLTLQFDGIING--SKDKASLISKPVIYVNEGGRASIKSVLSVPVFDEEGKI----VSKI 579 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 + G ++ + I + TE+ + + D R ++ +P+GG I L Sbjct: 580 ESGFIMEVS---GEYDNITKMVNTELDISISELKNEDKNIVDERNMNSKFIIPNGGFIKL 636 Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 GL I + + GIP+ +IP++G LF + ++ I Sbjct: 637 GGLNFTSIVENETGIPIFKEIPVIGQLFTSYEKTENVYDLVILI 680 >gi|320198845|gb|EFW73444.1| IncI1 plasmid conjugative transfer lipoprotein PilN [Escherichia coli EC4100B] Length = 547 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 90/259 (34%), Gaps = 27/259 (10%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S ++++N N QV L V I +++ +Q G + + S FG Sbjct: 285 SVQEIVNKRNNEMSRQVVLNVEILSIKKSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAE 344 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA---------ISGQSASFTSG 290 + + L AL ++ + + + I+ Q S Sbjct: 345 NVITSGVSIVDGKLAGSKAFLKALSSQGSVSVVTQNSAVTKNLTPVPMQIANQQGFIESV 404 Query: 291 GQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVI 341 V SST A ++TT G + P + + L + Sbjct: 405 TTDSTANVGSSTSLNAATITT---GFNMTLLPYIQPDSQNLQLLFSMSLSDKPTFEVFES 461 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI-PILGALFRN 400 G + P+ ++ + T++L SG T++L+G + + + K+G+ I P L Sbjct: 462 GGSKAQTPNVDLKTINQTIDLKSGQTVILSGFQQSNRKTSKQGV-----ITPSFFGLGGG 516 Query: 401 SRFNREETEIFIAATPFLV 419 +T + + TP ++ Sbjct: 517 INSEDGDTILVVLITPNVL 535 >gi|301646351|ref|ZP_07246238.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 146-1] gi|301075418|gb|EFK90224.1| type IVB pilus formation outer membrane protein, R64 PilN family protein [Escherichia coli MS 146-1] Length = 547 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 90/259 (34%), Gaps = 27/259 (10%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 S ++++N N QV L V I +++ +Q G + + S FG Sbjct: 285 SVQEIVNKRNNEMSRQVVLNVEILSIKKSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAE 344 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA---------ISGQSASFTSG 290 + + L AL ++ + + + I+ Q S Sbjct: 345 NVITSGVSIVDGKLAGSKAFLKALSSQGSVSVVTQNSAVTKNLTPVPMQIANQQGFIESV 404 Query: 291 GQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVI 341 V SST A ++TT G + P + + L + Sbjct: 405 TTDSTANVGSSTSLNAATITT---GFNMTLLPYIQPDSQNLQLLFSMSLSDKPTFEVFES 461 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI-PILGALFRN 400 G + P+ ++ + T++L SG T++L+G + + + K+G+ I P L Sbjct: 462 GGSKAQTPNVDLKTINQTIDLKSGQTVILSGFQQSNRKTSKQGV-----ITPSFFGLGGG 516 Query: 401 SRFNREETEIFIAATPFLV 419 +T + + TP ++ Sbjct: 517 INSEDGDTILVVLITPNVL 535 >gi|10955502|ref|NP_065354.1| type IV pilus outer membrane secretin lipoprotein PilN [Escherichia coli] gi|9971696|dbj|BAB12647.1| pilN [Escherichia coli] gi|326344460|gb|EGD68213.1| IncI1 plasmid conjugative transfer lipoprotein PilN [Escherichia coli O157:H7 str. 1125] Length = 547 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 95/261 (36%), Gaps = 31/261 (11%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GK 237 S ++++N N QV L V I +++ +Q G + + S FG + Sbjct: 285 SVQEIVNKRNNEMSRQVVLNVEILSIKKSSQEQAGIDWNAVFNDGHLGLSLGGSFGDAAE 344 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA---------ISGQSASFT 288 V G V G L + L AL ++ + + + I+ Q Sbjct: 345 NVITSGVSIVDGKLAGS--KAFLKALSSQGSVSVVTQNSAVTKNLTPVPMQIANQQGFIE 402 Query: 289 SGGQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEP 339 S V SST A ++TT G + P + + L + Sbjct: 403 SVTTDSTANVGSSTSLNAATITT---GFNMTLLPYIQPDSQNLQLLFSMSLSDKPTFEVF 459 Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI-PILGALF 398 G + P+ ++ + T++L SG T++L+G + + + K+G+ I P L Sbjct: 460 ESGGSKAQTPNVDLKTINQTIDLKSGQTVILSGFQQSNRKTSKQGV-----ITPSFFGLG 514 Query: 399 RNSRFNREETEIFIAATPFLV 419 +T + + TP ++ Sbjct: 515 GGVNSEDGDTILVVLITPNVL 535 >gi|213618889|ref|ZP_03372715.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 392 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 70/188 (37%), Gaps = 11/188 (5%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 211 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 266 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 G + D +F L+ALE+++ L++P++ ++ A + T Sbjct: 267 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLD--KNITFYTK 323 Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354 + + G +L TP +L+ +I L + + + + D +P + Sbjct: 324 LQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNS 383 Query: 355 KADTTVEL 362 + + L Sbjct: 384 EIASQATL 391 >gi|195953100|ref|YP_002121390.1| Type II secretory pathway component PulD-like [Hydrogenobaculum sp. Y04AAS1] gi|195932712|gb|ACG57412.1| Type II secretory pathway component PulD-like [Hydrogenobaculum sp. Y04AAS1] Length = 488 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 76/202 (37%), Gaps = 24/202 (11%) Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ--------SASFTS 289 ++ + L +++ +L+ALE+ +++ T T + Q + S+ S Sbjct: 280 TLTNPSNSLFNAGLSGSNYDALLNALEQYGKTKSIDSETYTVLPNQPIVYAPTNTQSYIS 339 Query: 290 GGQHLYKTVSSSTGATS-----VTTHDYGVVLHFTPTVLSPGRIGLRIQ------TEVSE 338 + +T V+ + G + P + + ++ + + ++ Sbjct: 340 SYNIYIPPTVAGVVSTPAYIPIVSYLNTGTSITILPRLANNKKLMVDVYYSQNTPQNLNT 399 Query: 339 PVIGVNAGDMPSYRVRKADT-----TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393 I ++ G + + + T L G TI L + D + + GIP L +IP+ Sbjct: 400 QNITISQGVTVPIQFPEVSSQNSVLTSVLKPGQTIALISSVYDLKKNNEAGIPFLIRIPL 459 Query: 394 LGALFRNSRFNREETEIFIAAT 415 + LF N+ + + I T Sbjct: 460 IKYLFGNTDKYSNKVQFIITIT 481 >gi|123443695|ref|YP_001007666.1| putative type IV pilus operon lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090656|emb|CAL13527.1| putative type IV pilus operon lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 562 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 92/268 (34%), Gaps = 41/268 (15%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGSSSGPSKSFAADFG 235 + ++ N QV L V + V + +Q G + G+S + AAD Sbjct: 306 RYIDYQNELLNRQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINAADNA 365 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 D + E ++ AL + + + E I+ F Q Y Sbjct: 366 FSGGLSILDTATGPAAKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGY 425 Query: 296 KTVSS----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLR----------IQTE 335 SS S+ T + T G+ + P + G + L+ IQ Sbjct: 426 IQSSSTTATANAGTTSSMQTGIIT--TGLFMSMLPYIQENGDVQLQFAFTLSDKPTIQPF 483 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPI 393 S G D P++++R TV + +G T+VL G + D K+G P Sbjct: 484 FSRD--GNTRTDTPAFKLRSLTQTVNMRAGQTLVLTGADQLDSVANKQGAFTPG------ 535 Query: 394 LGALF-RNSRFNREETEIFIAATPFLVK 420 LF + T + I TP L++ Sbjct: 536 -NFLFGGGHVGSDTRTTLVILITPVLLR 562 >gi|153947286|ref|YP_001402688.1| type IVB pilus formation outer membrane protein [Yersinia pseudotuberculosis IP 31758] gi|152958781|gb|ABS46242.1| type IVB pilus formation outer membrane protein, R64 PilN family [Yersinia pseudotuberculosis IP 31758] Length = 530 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 94/263 (35%), Gaps = 31/263 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----DFGGKF 238 + ++ N QV L V + V + +Q G + S + + Sbjct: 274 RYIDHQNELLNRQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINVANNT 333 Query: 239 VSEGGDF--SVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 +S G + G ++FS E ++ AL + + + E I+ F Q Y Sbjct: 334 LSGGLSILDTATGPAEKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGY 393 Query: 296 KTVSSST---GATSVTTHDYGVV-----LHFTPTVLSPGRIGLR----------IQTEVS 337 SS+T A + ++ G++ + P + G + L+ IQ S Sbjct: 394 IQSSSTTVTANAGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPIIQPFFS 453 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 G D P++++R TV L +G T+VL G + D K+G S Sbjct: 454 RD--GNTRNDTPAFKLRSLTQTVNLRAGQTLVLTGADQLDTVANKQGAFTPSNF----WW 507 Query: 398 FRNSRFNREETEIFIAATPFLVK 420 T + I TP L++ Sbjct: 508 GGGHNGLETRTTLVILITPVLLR 530 >gi|213418601|ref|ZP_03351667.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 138 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 4/116 (3%) Query: 308 TTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELP 363 + G +L TP +L+ +I L + + + + D +P + + + L Sbjct: 16 ESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLL 75 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G +++L G + + IPLL IP++G LFRN +V Sbjct: 76 AGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVV 131 >gi|327412816|emb|CAX67822.1| putative pilus assembly protein [Salmonella bongori] Length = 560 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 82/258 (31%), Gaps = 26/258 (10%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 + N QV L V + V +Q+G +I S + + + G + Sbjct: 303 YVEQQNRQMNRQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNAAS 362 Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 D + ++ AL + + + Q +Y Sbjct: 363 ASVSILDSATGSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVA 422 Query: 298 VSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------- 341 SS+T T V G + P + G + L++ +S+P Sbjct: 423 QSSTTTTTDVGATTSLTPGMMTTGFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKD 482 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G + +MP ++R L +G +VL G + + + K G +LG Sbjct: 483 GNSYIEMPYTKLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGR 538 Query: 402 RFNREETEIFIAATPFLV 419 + + + I TP L+ Sbjct: 539 DGDDSRSTLVIIITPELM 556 >gi|222147187|ref|YP_002548144.1| pilus subunit transmembrane protein [Agrobacterium vitis S4] gi|221734177|gb|ACM35140.1| pilus subunit transmembrane protein [Agrobacterium vitis S4] Length = 159 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 13/122 (10%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 + +A +P A ++ + +N+ IL++ V Sbjct: 14 LPMLFRCCFAFLLAGMATVPGTAHAEDPLLR-------------VVMNQARILKLDRPVS 60 Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 V++ + AD V P+T+ L G++ G N++L+ G + + IL+ D A+ Sbjct: 61 KVIIGNEKVADATVADPKTIVLTGRSFGTTNLVLLDSQGNAIFDERILVSIDEANTVRLY 120 Query: 128 RR 129 ++ Sbjct: 121 KQ 122 >gi|323669655|emb|CBJ94777.1| pilus assembly protein [Salmonella bongori] Length = 560 Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 82/258 (31%), Gaps = 26/258 (10%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 + N QV L V + V +Q+G +I S + + + G + Sbjct: 303 YVEQQNRQMNRQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNATS 362 Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 D + ++ AL + + + Q +Y Sbjct: 363 ASVSILDSATGSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVA 422 Query: 298 VSSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------- 341 SS+T T V G + P + G + L++ +S+P Sbjct: 423 QSSTTTTTDVGATTSLTPGMMTTGFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKD 482 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 G + +MP ++R L +G +VL G + + + K G +LG Sbjct: 483 GNSYIEMPYTKLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGR 538 Query: 402 RFNREETEIFIAATPFLV 419 + + + I TP L+ Sbjct: 539 DGDDSRSTLVIIITPELM 556 >gi|255624862|ref|XP_002540535.1| conserved hypothetical protein [Ricinus communis] gi|223495099|gb|EEF21848.1| conserved hypothetical protein [Ricinus communis] Length = 150 Score = 78.2 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E K ++++ + K ++++P VQ V +P ++ +P T+Y+ G +VG N+I+ Sbjct: 58 EAAKPAQLALQVGKSSLMRLPEPVQHRSVGNPLVVQALMVAPDTLYIAGVDVGTTNMIIQ 117 Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135 G G LDI + D + L+ L + D + Sbjct: 118 GKSG-LCSVLDITVAMDPSALQAMLATAMPDEH 149 >gi|153829316|ref|ZP_01981983.1| MSHA biogenesis protein MshL [Vibrio cholerae 623-39] gi|148875216|gb|EDL73351.1| MSHA biogenesis protein MshL [Vibrio cholerae 623-39] Length = 429 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 22/145 (15%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----D 233 ++V L I+ + QV L+ I EV Q G S SS+G S + + D Sbjct: 261 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQD 320 Query: 234 FGGKFVSE------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 G ++ GG +V V+ SF+ V+ + + L+ P +TA + Sbjct: 321 SNGNPITSVLPGLDAIGNLLGGQSNV--VISSGSFDAVISFMATQGDLNVLSSPRVTASN 378 Query: 282 GQSASFTSGGQHLYKTVSSSTGATS 306 Q A G Y T SS T Sbjct: 379 NQKAVIKVGTDEYYVTDLSSVVGTG 403 >gi|217425271|ref|ZP_03456766.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 576] gi|217391876|gb|EEC31903.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia pseudomallei 576] Length = 349 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV L VT+ V G ++ + F ++ D S + Sbjct: 101 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 160 Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309 F ++ AL + +R ++T ++ Q Q Y S+T +V + Sbjct: 161 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 220 Query: 310 HDY--------GVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGD------MPS 350 G + P VL G + L+ T +S V G P Sbjct: 221 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 280 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 +R V + SG T+V++G + + G+ P + AL R I Sbjct: 281 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 336 Query: 411 FIAATP 416 I TP Sbjct: 337 VILITP 342 >gi|319428145|gb|ADV56219.1| type II and III secretion system protein [Shewanella putrefaciens 200] Length = 492 Score = 77.4 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 47/340 (13%), Positives = 121/340 (35%), Gaps = 55/340 (16%) Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160 L D Q N+ + +I + + + N+ ++ + + G + T+ R Sbjct: 188 LFNADQDQFANIKATVSSEIEDAVKVIESMMGEKNVNGQVHPN--IASGTL-TVTTKPRI 244 Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220 + E ++ Q LN V + V I + ++ G ++ Sbjct: 245 MRDVENYVKQ-----------------LNAMFGQMVRIDVQIITFQSNLDNSFGVDWNMV 287 Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280 ++ + +F G+ + G F+ L S +++AL+ + + P++ AI Sbjct: 288 RETTKGTLNFTIPSSGE--TSGLTFASTDKLFNGS-TALVNALKTQGNVSLVTTPSMLAI 344 Query: 281 SGQSASFTSGGQHLYK---TVSSSTGATSVTTHDY-------GVVLHFTPTVLSPGRIGL 330 + + S + Y T+ +T S T + G + + + + Sbjct: 345 NNRVGEIESLRKEAYVKDITMREATNEDSSTYSEVNQGVVSEGFSMRALVKI-DGDEVLM 403 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVR-------KADTTVELPSGGTIVLAGLLKDDIQQLKE 383 ++ +S + +MP+ ++ + + +++ +G T++L+G + + + Sbjct: 404 QMSATISR-LGNFGTVEMPTITLKTPNMSEDRFNQPLKIQNGRTVILSGYTQSAVTSEQS 462 Query: 384 ---GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 PLL + ++ + TP +++ Sbjct: 463 ESFRNPLLG----------GNSGKERKSHTLVLVTPRIIR 492 >gi|149925851|ref|ZP_01914115.1| type II and III secretion system protein [Limnobacter sp. MED105] gi|149825968|gb|EDM85176.1| type II and III secretion system protein [Limnobacter sp. MED105] Length = 531 Score = 77.0 bits (188), Expect = 7e-12, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 93/263 (35%), Gaps = 33/263 (12%) Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------GGDFSVKGVLD 252 + +V + +G + + + G + + + G + + Sbjct: 241 VLQVDLNDSNNMGVRWELYKAGGGINTAPDSSIAGASSTADRITQLTRTASGIETLIFGE 300 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSV 307 FS ++ L+ ++TL++P + ++G + + G + + + + ++ Sbjct: 301 NFSTNFLIDFLKSQGDVKTLSQPKIGLMNGTNGNIRVGQSTTFVSRVGSQIVNGVAQSTA 360 Query: 308 TTHDYGVVLHFT-------PTVLSPGRIGL-RIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 T + L + T+ + I + + +GV+ +P R+ T Sbjct: 361 DTQNLRTGLEVSLTGEAHDSTIYTRINISITELLALKRFTALGVDLN-LPEVADRELKTQ 419 Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 V G TI+L G+ Q + LG R+ + ++TE+ + P L+ Sbjct: 420 VRCRPGDTILLGGITVSRAQDDFQS--------GLGT--RSRTESTKQTELVVTIRPRLL 469 Query: 420 KPVAMRDLSRPDDHYSVEDDAKA 442 + +L +P + KA Sbjct: 470 LFGEVAELEQPAAKIKRRIEPKA 492 >gi|225872364|ref|YP_002753819.1| transporter, outer bacterial membrane secretin (Secretin) family [Acidobacterium capsulatum ATCC 51196] gi|225793711|gb|ACO33801.1| transporter, outer bacterial membrane secretin (Secretin) family [Acidobacterium capsulatum ATCC 51196] Length = 616 Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 2/149 (1%) Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337 G S++ S G +S+ V D G+ LH TP+V G + L+ Sbjct: 460 LTSPGVSSALQSLGISSSSLLSTEETIPQVQYEDLGLTLHVTPSVTGRGNVALK-LDLKL 518 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 + + G + +P R+ + G + ++ + + GIP LS++P G Sbjct: 519 DTLEGQSLNSIPVLNDRELTAITTVKPGSSAMIMSSMSQQLSNAVTGIPGLSELPGFGNA 578 Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426 NS ++ + + I TP +V+ V + Sbjct: 579 -TNSDASKNISRLVIVVTPRIVRRVHAEE 606 >gi|149175013|ref|ZP_01853636.1| bacterial type II/III secretion system protein [Planctomyces maris DSM 8797] gi|148845991|gb|EDL60331.1| bacterial type II/III secretion system protein [Planctomyces maris DSM 8797] Length = 308 Score = 76.6 bits (187), Expect = 9e-12, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 19/167 (11%) Query: 255 SFETVLHALERATAIRTLA-EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + E + L++A + + P + +SGQSA+ SGG++ + + TSV +G Sbjct: 152 NAEEAIEQLKKAGRVTVVHGSPEIVTVSGQSATSMSGGKYPV-LIPAGDNQTSVEWKRFG 210 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 V P +L GRI L E+S+ + VN +P VR+ T E+ G T+V Sbjct: 211 VFCKVEPRLLDNGRIQLEFSPEISQRDYANAVKVNGLTIPGLTVRRIYTQAEMNLGETLV 270 Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 + + P + ++ A ++ + E+T TP Sbjct: 271 V---------RTVS--PAGGQSQVVNA--KSDTTSSEDTVTLFMVTP 304 >gi|114798749|ref|YP_761695.1| hypothetical protein HNE_3018 [Hyphomonas neptunium ATCC 15444] gi|114738923|gb|ABI77048.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 147 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 51/96 (53%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 +K A A+ ++ +++S+ +K + L++ ++V + ADV VH R + Sbjct: 4 AVKPALVALASLFLAGTAFAQQLSVEASKTVPLRLTGPAASIVVGNKNIADVAVHDDRLI 63 Query: 88 YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 ++ GK+ G N+++ G+++ + ++++ + + L Sbjct: 64 FVTGKSYGTTNLMVFNKAGEEVYSAEVVVTANSSSL 99 >gi|59714382|ref|YP_207156.1| hypothetical protein VF_B0026 [Vibrio fischeri ES114] gi|59482659|gb|AAW88268.1| hypothetical protein VF_B0026 [Vibrio fischeri ES114] Length = 479 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 102/322 (31%), Gaps = 41/322 (12%) Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169 LN++ + + + +L + + +I + +S + L V + ++ Sbjct: 182 LNVEYKDVQIVDEIAASLEKVLGGDDIAKKSISVSPALS-SVTVTATIDQMQDI------ 234 Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229 + V++ QV L + + E R ++ + +I + Sbjct: 235 ------------EYVIDHYKKELSKQVILDIQMIEFRSNLGTEHSIDWNIVKDTGNGLLQ 282 Query: 230 FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 F G + G E+ + LE+ ++ T T ++ Q A T Sbjct: 283 FFVPGTTTISQGAGYGLAFTGKGKWTGTESFIRVLEQQGSVSTQTPITAMILNNQPAKIT 342 Query: 289 SGGQHLYKTVSSSTGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEV----- 336 Y +SS + V + GV + +++ + LRI ++ Sbjct: 343 QQNVIPYIYEASSESSEGVISASVTRKTEVEGVDMMVN-SIIQDEYVSLRISGQLQKIFN 401 Query: 337 -SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 S +G M S + + +L G T V+A + + + Sbjct: 402 RSTEKVGDVNLGMLSTQKSEITFANKLRYGQTFVIASVKQTSKTAEQTKSFWT------- 454 Query: 396 ALFRNSRFNREETEIFIAATPF 417 LF + + E + TP Sbjct: 455 ELFGGTGTRNDTVETLVLLTPR 476 >gi|238796228|ref|ZP_04639738.1| Type II secretory pathway, component PulD [Yersinia mollaretii ATCC 43969] gi|238719921|gb|EEQ11727.1| Type II secretory pathway, component PulD [Yersinia mollaretii ATCC 43969] Length = 555 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 82/250 (32%), Gaps = 29/250 (11%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGDFSVKG 249 QV +KV + D F + + G + G V G Sbjct: 303 RQVAIKVDVYSFNVDRNSNWQFDLTAKFKTGVAQYGVGSTAMLSDGSNLVGSLTSSITGG 362 Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-------SSST 302 D + VL+ LE+ + + +T +SGQ Y + + +T Sbjct: 363 RFDGS--KAVLNMLEQNGDVSVVTTANVTTMSGQPVPVQVSNSRGYVSAVKVEMNDNKTT 420 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------------MPS 350 + G ++ P V+ G++ ++ +S V N + +P+ Sbjct: 421 TTAESSMVTAGFSMNILPNVMDDGKVLMQYNMNISTLVGKDNGFETVIIDNNGTKMQLPN 480 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 R + + +G T+V+AG + G + +LG N + + + Sbjct: 481 VDQRSFIQSGMVNNGSTLVMAGFEQVLNNSGDSGQ-GSANFKLLG---GNRKGQQSREIL 536 Query: 411 FIAATPFLVK 420 I TP ++ Sbjct: 537 VICITPVVLD 546 >gi|114568966|ref|YP_755646.1| hypothetical protein Mmar10_0415 [Maricaulis maris MCS10] gi|114339428|gb|ABI64708.1| conserved hypothetical protein [Maricaulis maris MCS10] Length = 152 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 46/91 (50%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91 A A + I V +++ + ++++P + ++V +P+ AD +VH RT+ + G Sbjct: 6 ATAFTLAIVCVAPAAAHDLAVPVEHAEVIRLPAEASAIVVGNPSIADALVHDGRTLVVTG 65 Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAH 122 + G+ NVI + G+ + DI++ + Sbjct: 66 RLQGRTNVIALDRVGRVIYERDIVVSNPVEG 96 >gi|171315562|ref|ZP_02904798.1| putative bacteriophage-related lipoprotein [Burkholderia ambifaria MEX-5] gi|171099399|gb|EDT44137.1| putative bacteriophage-related lipoprotein [Burkholderia ambifaria MEX-5] Length = 142 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 11/140 (7%) Query: 280 ISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334 +SGQS G Q S T SV D G++ PTV++ + Sbjct: 1 MSGQSVRLNVGSQVPTLGSISYQGPSGTPVQSVQYQDAGLIFDVQPTVMADSIQVKLNEE 60 Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 S + P+ R+ TTV L G +VL GL++D + P L Sbjct: 61 MSSFVATSTGVNNSPTKNTRQMATTVNLKDGEVVVLGGLVQDTDTRSTNS-PG-----WL 114 Query: 395 GALFRNSRFNREETEIFIAA 414 ++ TE+ + Sbjct: 115 PKFLDGHSASKGRTEVLLVL 134 >gi|83859353|ref|ZP_00952874.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii HTCC2633] gi|83852800|gb|EAP90653.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii HTCC2633] Length = 146 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 52/97 (53%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 AA++ + + + ++ + ++ ++++P D V+V +P AD +++ RT+++ GK Sbjct: 7 AAALVMTLGLGVAQAREFVVTADQAGLIRLPGDASGVIVGNPGIADAMLYDSRTLFVTGK 66 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 G+ N+I++ G+ + D+++ + + R Sbjct: 67 VFGRTNLIVLDEAGRVLYTSDLVVTQPDSQTVQVFRS 103 >gi|262360319|gb|ACY57040.1| putative membrane transport protein [Yersinia pestis D106004] Length = 104 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 33/81 (40%) Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + +A P L Q+AS G Y A ++ + + + TP +L G Sbjct: 20 NQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNG 79 Query: 327 RIGLRIQTEVSEPVIGVNAGD 347 +I L ++ + P I + G+ Sbjct: 80 KIILDLKISQNMPGITIKRGE 100 >gi|239833241|ref|ZP_04681570.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG 3301] gi|239825508|gb|EEQ97076.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG 3301] Length = 139 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 56/114 (49%), Gaps = 2/114 (1%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 S +P + A AVI ++ + I++ ++ IL++ V++ +P+ Sbjct: 5 LFSLGGFGVVPAMGAAFMAVIAVA--QASAEDYIALETSQARILRLARPADSVVIGNPSI 62 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 AD VV +T+ L GK+ G N++++ G+ +L+ ++++ R+ R+ Sbjct: 63 ADAVVQDAQTIVLTGKDFGVTNIVVMDKQGEPILDRELVVSRNTRGTTRIYRQA 116 >gi|150021136|ref|YP_001306490.1| secretin/TonB, short N-terminal domain [Thermosipho melanesiensis BI429] gi|149793657|gb|ABR31105.1| Secretin/TonB, short N-terminal domain [Thermosipho melanesiensis BI429] Length = 369 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 79/218 (36%), Gaps = 23/218 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 +++NL++ +K+ + E+ + L++ G + S ++ S+ + Sbjct: 152 EIINLID-KKSHIAEIKIKLYEIDEEDLRKFGVEFSSNDETTTLKVSYNNN--------- 201 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + L + ++ AL + + L T+ + +SA ++ Y T+ + Sbjct: 202 -ALQLSLDLMDTNLFAIISALISSGKAKILTNGTIFLKANESAKISA-----YTTIDFTL 255 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 V + + TV + L + + +++L Sbjct: 256 SNDKVIEKKLLNEIEISGTVFVD-HVSLNLTARAEALSPSNKTIGL------TFSNSLDL 308 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 +AGL + ++ GIP L +PI+G LF+ Sbjct: 309 KYNKHYYIAGLSFETTNNIESGIPGLKDLPIIGNLFKT 346 >gi|90409526|ref|ZP_01217562.1| type II secretion system protein [Psychromonas sp. CNPT3] gi|90309367|gb|EAS37616.1| type II secretion system protein [Psychromonas sp. CNPT3] Length = 98 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 37/81 (45%) Query: 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104 + K +++ L++ +L +P + + ++ AD + + +FGK VG ++ ++ Sbjct: 18 AQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTKIMIFGKRVGSTSLYVLDA 77 Query: 105 DGKQMLNLDILIERDIAHLEM 125 + + + + ++ L Sbjct: 78 RENVIYSATVKVNHNVQELNA 98 >gi|221235980|ref|YP_002518417.1| CpaC-like secretion pathway protein [Caulobacter crescentus NA1000] gi|220965153|gb|ACL96509.1| CpaC-related secretion pathway protein [Caulobacter crescentus NA1000] Length = 143 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 ++R + ++ + A+ PI+ +A + + + + + Sbjct: 1 MRRLSLAIAAVATLCGAAAGAQTLPIEPVSAKT-----SGAAVSVDLPVSAGQASYVSLA 55 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 V+D++V DP+ ADV V + RT+ + GK G +++ G +G+ + + +++ + Sbjct: 56 GSVRDIVVGDPSIADVSVVNDRTLVVLGKRPGVTSLLAFGANGRPLADRQVVVSEN 111 >gi|167648156|ref|YP_001685819.1| hypothetical protein Caul_4197 [Caulobacter sp. K31] gi|167350586|gb|ABZ73321.1| conserved hypothetical protein [Caulobacter sp. K31] Length = 131 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 3/92 (3%) Query: 29 IKEANAAVINISDVEIGK---GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85 + A A +++ G +S+ + + + V+DV+V +P ADV + + R Sbjct: 4 LSLALCACLSLGATAAGAQSLASPLSVSAGQAARISLSAPVRDVVVGNPAVADVSLINER 63 Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 T+ + GK G V+ G + + +++ Sbjct: 64 TLVILGKKAGATTVMAFDARGHALADRQVVVS 95 >gi|120536911|ref|YP_956969.1| Type II secretory pathway component PulD-like [Marinobacter aquaeolei VT8] gi|120326745|gb|ABM21054.1| Type II secretory pathway component PulD-like [Marinobacter aquaeolei VT8] Length = 547 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 85/256 (33%), Gaps = 18/256 (7%) Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 A S + + +N QV L++ A V + + ++ + Sbjct: 291 AMESVTEYIEKVNDVFGRQVYLQIRTAAVSVESANDFNVTWNNILNTVNSGAFELSSQTA 350 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289 + ++ + L L + E +T +S Q S Sbjct: 351 EVPTQNLPNVFNVIRTSNGASLALELLASELESTEVNEQAVTTLSNQPTSLKVLTETGYI 410 Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFT--PTVLSPGRIGLRIQTEVSEPVIGVN-A 345 G TV++ + V T + T P V+S R+ L++ E+S + VN Sbjct: 411 SGISQQDATVNADNLVSDVQTDTVNIGFDATLLPRVISESRLQLQVALELSSNLTLVNFD 470 Query: 346 GDMPSYRVRKADTTVE---LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + R ++ V+ L +G T VLA ++G P L + Sbjct: 471 STIVQTPTRDRNSVVQRAWLRNGETWVLAAFNSSKSSNQEQGT---GD-PGFWGLGGGTS 526 Query: 403 FNREETEIFIAATPFL 418 ++EE + + TP + Sbjct: 527 KSKEEQILLVMITPHI 542 >gi|332283584|ref|YP_004415495.1| PilN family type IV pilus biogenesis protein [Pusillimonas sp. T7-7] gi|330427537|gb|AEC18871.1| PilN family type IV pilus biogenesis protein [Pusillimonas sp. T7-7] Length = 575 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 50/270 (18%), Positives = 94/270 (34%), Gaps = 34/270 (12%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + ++ +N Q L VT+A V +G ++ S+ S ++ A Sbjct: 313 QYIDKINERMSRQAMLYVTVASVTLTDSDSLGINWNLVWQSA--SGNYGAGLMNALSPLE 370 Query: 243 GDFSVK-GVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 G SV G+LD + + +L AL + A+ + + +T Q + Sbjct: 371 GASSVGFGILDTATGRAGQFAGTQAILSALSKQGAVSIMRQRGVTTQHLQPTPIHLTNEE 430 Query: 294 LYKTVSSSTGATSVTTHD--------YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345 Y S T V + + G + P + + L+ +S P + Sbjct: 431 QYVCGRSQTNTAQVGSTESIQMCSVVTGFAMDILPDIH-GQNLTLQFSLNMSPPAVIQQV 489 Query: 346 GDMP-------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK-IPILGAL 397 P S + V + SG T+V++ + K+GI S IP G + Sbjct: 490 PGDPDKPVFIASVDRQVFLQRVGMRSGQTLVISDFQEASETSTKQGIGGTSTWIPTGGGV 549 Query: 398 FRNSRFNREETEIFIAATPFLV-KPVAMRD 426 + + I +P ++ P+ + D Sbjct: 550 -----REKARKVLVIIISPRIMPNPMDIED 574 >gi|284008046|emb|CBA74162.1| conjugative transfer protein lipoprotein PilN [Arsenophonus nasoniae] Length = 534 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 122/334 (36%), Gaps = 41/334 (12%) Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAV 161 G G + I + ++ +L + + + + L T+ D R + Sbjct: 220 GQSGNALSGDAITSQSTSTTIKSSLYADLQGAVKSMLTPGLGRMFLSAGNLTVTDVPRVL 279 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + E F+ + + + QV L + + V + Q+G + Sbjct: 280 DTVERFVDERNQTL-----------------DRQVVLNIEVLSVEKRQKDQLGLDWNAVF 322 Query: 222 SSSGPSKSFAADFGGKFVS--EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279 ++ S + FGG + GG V G L + L AL + + + + T Sbjct: 323 NNGRLGLSLSQAFGGAAGNIMNGGFSVVDGRLAGS--KVFLKALAEQAKVSVVTQQSNTT 380 Query: 280 ISGQSASFTSGGQHLY------KTVSSSTGATSVT--THDYGVVLHFTPTVLSPG-RIGL 330 + + Q Y ++ ++ ATS+ T G ++ P ++ G + L Sbjct: 381 TNLSPVAMQVAEQEDYVAQVTTQSTANVGTATSIQPATITTGFYINLLPNIMPDGQHLLL 440 Query: 331 RIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 + +SEP G ++ ++ + +++ V++ +G T+VL+G + + K+G Sbjct: 441 QFAINLSEPPTRRTFTSGESSVELLNTQLKTFTQRVKMKTGQTLVLSGFQQASRKGSKQG 500 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 + + P L + + + + TP L Sbjct: 501 V---GQ-PWFFGLGGGQQAEDGDRMLVVLITPVL 530 >gi|293386468|ref|YP_003540630.1| conjugal transfer protein [Erwinia amylovora ATCC 49946] gi|291201111|emb|CBJ48249.1| conjugal transfer protein [Erwinia amylovora ATCC 49946] Length = 569 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 92/262 (35%), Gaps = 31/262 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + + N A QV LKV I V + IG ++ + V++ Sbjct: 312 EYLTSENKALSRQVNLKVVIYTVNSETSDAIGIDWNVIYKTLAGKYGINLAGPSGTVADA 371 Query: 243 GDFS------VKGVLDRFSFETVL-HALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G S G +F+ + L AL + + + L + SAS G Q Y Sbjct: 372 GSLSFSVLDTATGAARQFAGSSFLFEALSKQAKVADVRTIPLMTTNMASASVVVGRQIAY 431 Query: 296 ----KTVSSSTGATSVTTH-------DYGVVLHFTPTVLSPG-RIGLRIQTEVS------ 337 T STG+T++ + G + P +L G R+ L + +S Sbjct: 432 LKSVSTTVYSTGSTTLPSQTLTPGSVTTGTNITIFPKILDGGDRMMLNMFLNISSLIQLR 491 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS-KIPILGA 396 E + P R V L G T+V++GL ++ ++G LS I G Sbjct: 492 EISSDTEKLEAPEVDSRSVPQRVWLKPGQTVVISGLEQNVATSNRQG--QLSPDNQITG- 548 Query: 397 LFRNSRFNREETEIFIAATPFL 418 ++ I TP++ Sbjct: 549 --GQRSGDKTRQSFVITVTPYI 568 >gi|242279172|ref|YP_002991301.1| type II secretory pathway component PulD-like protein [Desulfovibrio salexigens DSM 2638] gi|242122066|gb|ACS79762.1| Type II secretory pathway component PulD-like protein [Desulfovibrio salexigens DSM 2638] Length = 497 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 87/251 (34%), Gaps = 33/251 (13%) Query: 183 KVMNLLNIAGEDQVTLKVTI--AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 K + LN QV L V + E+ R+ I SF+ G + + Sbjct: 254 KYIKSLNTKMGRQVALAVKVWALEMNRNA----DVGFDIESMLKAGQSSFSMLGGQPYTT 309 Query: 241 EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-K 296 G ++ + +++ +L AL++ L + ++ Q+ + Y Sbjct: 310 LSGAGTLTAAILDGNWKDTKLMLRALKQRGRTTLLTSGSGIVMNNQALPVQVVKRDTYLA 369 Query: 297 TVSSSTGATSVTTHD-------YGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGV 343 +SS+T S+ T + G + P +++ + L+ +S E G Sbjct: 370 GISSTTTENSMQTSELTPGEVSTGFSMTVIPHIMNNRKAILQYNITLSSLDSMDEFTSGD 429 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +P R V++ G T+VLAG ++ QQ K +G Sbjct: 430 LTIQLPQVSTRSFSQRVKMKCGQTLVLAGFEQETDQQSK----------GIGISAGGHSQ 479 Query: 404 NREETEIFIAA 414 ++ I I Sbjct: 480 KYGKSLIIITI 490 >gi|293602243|ref|ZP_06684692.1| PilN family type IV pilus biogenesis protein [Achromobacter piechaudii ATCC 43553] gi|292819386|gb|EFF78418.1| PilN family type IV pilus biogenesis protein [Achromobacter piechaudii ATCC 43553] Length = 582 Score = 73.9 bits (180), Expect = 6e-11, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 84/256 (32%), Gaps = 27/256 (10%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-------DF 245 Q +T+A V+R G + S + S G D Sbjct: 318 TRQALFNITVAVVQRTETDDQGLDLTAVYKSLNGNYGITVANAFTAASSAGSASIGILDT 377 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 + + +L AL + + +P++T ++ Q Q Y S+T Sbjct: 378 ATGTAGQFAGSKAILRALSSQGRVSIVTQPSVTTLNYQPVPVQVAKQTSYLAAVSNTATA 437 Query: 306 SV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSY 351 V T G + P ++ ++ L+ +S G N+ ++P Sbjct: 438 QVGSTSALTPGTVTTGFSMDLLPFMIDSEQMLLQFTMNLSTDPRLRTVTSGDNSIEVPEV 497 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE-I 410 R V L SG T++L+G ++ + + G+ S L E + Sbjct: 498 DSRIFSQRVRLRSGQTLILSGFEQNVDRGNRSGMFSPSN-----WLTGGGGSTNNRREVV 552 Query: 411 FIAATPFLVKPVAMRD 426 I TP +++ + D Sbjct: 553 VILITPIVLEDDSAFD 568 >gi|297592282|gb|ADI47020.1| PilN [Escherichia coli] Length = 535 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 95/276 (34%), Gaps = 28/276 (10%) Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 L+ FL+ + + ++ S+ V N QV L V + VR+ Q G + S Sbjct: 269 LATGFLTVTDTPRVLDTVSRFV-EARNREMRRQVVLNVEVLSVRKTRRDQAGIDWNAVFS 327 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHALERATAIRTLAEPTLT 278 GG F S D GV + L AL + + + + Sbjct: 328 DG----RLGLTLGGAFSSAADDIITSGVSIVDGKLTGSKAFLKALSSQGTVSVVTQNSAV 383 Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGR--- 327 + Q Y ++ +V T G + P + R Sbjct: 384 TKNMTPVPMQVASQQGYIEGVTTDTTANVGTSTSLNAATITTGFNMTLLPFIQPDARSLQ 443 Query: 328 ----IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + L + G + +P+ ++ + T++L SG T++L+G + + +++ Sbjct: 444 LLFSMNLSDKPTFEVFESGGSRAQVPTVDLKTINQTIDLKSGQTVILSGFRQSGSKSVRQ 503 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ P L + ++T + + TP ++ Sbjct: 504 GV---GS-PAFFGLGGGTDSGDDDTILVVLITPHVI 535 >gi|160873109|ref|YP_001557114.1| hypothetical protein Sbal195_4700 [Shewanella baltica OS195] gi|160858631|gb|ABX51854.1| conserved hypothetical protein [Shewanella baltica OS195] Length = 492 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 81/257 (31%), Gaps = 32/257 (12%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 + ++N + QV L + I E R + K+ +I S F G VS+ Sbjct: 250 RNLVNSVQEQFGQQVVLDIRILEFRSNRGKERSLDWNIIKDVGNGSLEFMI-PGTTTVSQ 308 Query: 242 GGDFSVK--GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G + + G + ALE+ + T T +S + A Y Sbjct: 309 GASYGMAFRGTGKWDGTAAFIRALEQQGTVSTETPITALGLSNRPARIAQTMTTPYIDEI 368 Query: 300 SSTGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DM 348 S V T GV + TP V+ + L I ++++ V N + Sbjct: 369 KSESNDKVITASVTRASQSEGVDMMITPKVMDD-AVWLSIAGKLTKIVGKRNETVHDVQL 427 Query: 349 PSYRVRKADTTVE--LPSGGTIVLAGLLKDD---IQQLKEGIPLLSKIPILGALFRNSRF 403 R+++ L G T+V+ + + G+P Sbjct: 428 LFLDTRESEINFTNKLLYGQTVVIGSIKQTSTTAESNSNFGVP------------SGEGT 475 Query: 404 NREETEIFIAATPFLVK 420 E + TP V+ Sbjct: 476 LSNTVETLVLLTPRKVQ 492 >gi|281356794|ref|ZP_06243285.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316921|gb|EFB00944.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 554 Score = 73.1 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 47/329 (14%), Positives = 107/329 (32%), Gaps = 58/329 (17%) Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-------- 227 Y+ + ++++ ++ + + +K+ + E+ + ++G ++ G Sbjct: 223 YSRKNIEEMLRKYDVPLPE-IKIKLNVYELYSENDDKLGVDFQAWKNNEGTDFFSVGGRF 281 Query: 228 -KSFAADFGGKFVSEGGDFSVKGVLDRFSFETV-LHALERATAIRTLAEPTLTAISGQSA 285 ++AA +GG G + T L L + +T ++ Sbjct: 282 RDNWAATYGGTMARPQGSERTSFYNFNPKWNTRYLDFLTSKGKAKIAYSGEVTVRQNTTS 341 Query: 286 SFTSGGQHLYKTVS------------------------------------SSTGATSVTT 309 + + Q Y + +VT Sbjct: 342 TLSRTTQIFYTDTTVPPDDTQETIDNWFTRPLDNALQALGRESPGNDIRIGKDNQQNVTR 401 Query: 310 --HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-RKADTTVELPS-G 365 +G ++ ++P L+I + S +IG + P + +V + + Sbjct: 402 APQSFGFIMTVKAGSIAPEAAILQISLDNSS-LIGYQSSGAPRIQKGNTIRNSVMISTKR 460 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI-----AATPFLVK 420 V+ GL K ++ + G+P L IP LG LF+ + ++++ + P + Sbjct: 461 NEFVIGGLEKREVVRGSTGVPYLKDIPGLGYLFQVESESTRKSQLVVAAQCEYVYPESIS 520 Query: 421 PVAMRDLSRP-DDHYSVEDDAKAFFFNRV 448 P L R + +FFN+ Sbjct: 521 PEEYDKLIRSIRTRTADAGGRNHYFFNQY 549 >gi|15667831|gb|AAL05518.1|AF399919_5 PilN [Escherichia coli] Length = 539 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 81/263 (30%), Gaps = 19/263 (7%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 N + + + N + QV L V I +R+ +Q G + S S Sbjct: 281 TDNPQVLETVRAFIEKRNEEMKRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLG 340 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 + F + L AL + + + + + Sbjct: 341 STFTSAASDAITGGVSIVDGKLTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIAN 400 Query: 292 QHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEV 336 Q Y ++ +V T G + P +L + L + + Sbjct: 401 QQSYIESVTTDTTANVGSSTSLNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVI 460 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 G + +P+ ++ + TV+L SG T++++G + + K+G+ P Sbjct: 461 ENYESGGSKAQLPNVDLKTINQTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFG 516 Query: 397 LFRNSRFNREETEIFIAATPFLV 419 L S + TP ++ Sbjct: 517 LGGGSTVKTATPFSVVLITPNII 539 >gi|161789259|ref|YP_001595645.1| hypothetical protein BMSA_0058 [Vibrio sp. 23023] gi|161761384|gb|ABX77030.1| Hypothetical protein BMSA_0058 [Vibrio sp. 23023] Length = 503 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 108/323 (33%), Gaps = 29/323 (8%) Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + ++ + DIA + + + E G + + Q LS + Sbjct: 192 VAYKNVDVVSDIATGIRAILKADPKNGPDTETTKT----TGDSSLVGEVQVIPSLSSISV 247 Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPS 227 + + ++N QV L + + E R ++ + G ++ +++ G Sbjct: 248 RTTPERM---RKVESLVNRYQRELSKQVLLNIQVLEFRSNLGHEKGIDWNVVRNTAHGAL 304 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287 + F + G + KGV + + LE+ + T T ++ Q A Sbjct: 305 QFFIPGTNTVSLDAGYGLAFKGVGQWNGTNSFIKVLEKQGTVSTKTPVTALVLNNQPARI 364 Query: 288 TSGGQHLY----KTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEP- 339 + Y + SS +S T D GV + TP V + LRI ++++ Sbjct: 365 SQTLTKPYLSNISSESSEGVVSSSVTRDKQTEGVDMMVTPNV-KNQFVWLRISGKLTKIA 423 Query: 340 ---VIGVNAGDMPSYRVRKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394 VN + R++ T L G T V+ + + + LS L Sbjct: 424 SDHTEDVNNIKLRFLDTRESQITFTNKLRYGQTYVIGSVKQTSTTAERNESFWLS---WL 480 Query: 395 GALFRNSRFNREETEIFIAATPF 417 G + + E + TP Sbjct: 481 GGM----GSKVDTVETLVLLTPT 499 >gi|240142427|ref|YP_002966937.1| putative type IVB pilus formation outer membrane protein [Methylobacterium extorquens AM1] gi|240012371|gb|ACS43596.1| putative type IVB pilus formation outer membrane protein [Methylobacterium extorquens AM1] Length = 601 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 86/278 (30%), Gaps = 45/278 (16%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-----------------TGSSS 224 ++ +++ QV L + + V + + ++S Sbjct: 318 QEYADVMRKRMNGQVALSIQVLNVSLEDADSFDNNVAALFLGSNKGAFALGRRSPGFNAS 377 Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 P S + S G + + + + AL + + +LT ++G Sbjct: 378 DPRSSTIGNLNSATPSLGYAI-LDPTSPFANTQGAISALAERGNVSVVTSASLTTVNGSP 436 Query: 285 ASFTSGGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 + + ++T T T G L P ++ G + L+ Sbjct: 437 VPLQVVNKRNFVKNVTNTQGTGLSTGVASTTIQTDTVSTGFNLQMVPRIMQDGNVLLQYG 496 Query: 334 TEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +SE V + + +P+ R +P+ T+VLAG ++ Sbjct: 497 MNISELVGREDGFDTFTVNGSTVQLPNVNQRNFVQQSIVPNRSTLVLAGFETARSTSSQQ 556 Query: 384 GIPLLSKIPILGALFRNSRFNREETE-IFIAATPFLVK 420 G+ P L R ++ E + I TP L+ Sbjct: 557 GV---GD-PR-NWLLSGGRTSKNRREVVVILITPTLLD 589 >gi|38201735|ref|NP_938102.1| PilN [Serratia entomophila] gi|38176558|gb|AAR13124.1| PilN [Serratia entomophila] Length = 544 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 88/288 (30%), Gaps = 36/288 (12%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L V T+ D+ R +E +L N LN QV L V + V Sbjct: 277 LSAGVLTVTDTPRVLEQIGRYLDDRN-------------NELN----RQVVLNVQVYSVE 319 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 + Q G + +S S F G + + AL Sbjct: 320 KRTQDQYGIDWNAVFNSGSIGLSLTNAFSGAASDALNGGVSILDGKGAGTKAFIKALSEQ 379 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318 + + E + + + Q Y + ++ +V +T G + Sbjct: 380 ANVSVMTEASSMTTNLSAVPIQVALQQDYASSVTTENTANVGSSSSITKSTITTGFNMTV 439 Query: 319 TPTVLSPG-------RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 P ++ I + + + ++ R++ V + SG T+VL+ Sbjct: 440 LPFLMPKSPKMQLQFAINMSDDPTMRTFTSEKTSVELMKTRLKTFTQRVIMQSGQTLVLS 499 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G + +G+ G L ++ +T + I TP ++ Sbjct: 500 GYQSLNNTANHQGV---GSFRFFG-LGGGAKGENNKTMLVILITPVIL 543 >gi|329905867|ref|ZP_08274251.1| Lipoprotein [Oxalobacteraceae bacterium IMCC9480] gi|327547462|gb|EGF32282.1| Lipoprotein [Oxalobacteraceae bacterium IMCC9480] Length = 243 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 74/240 (30%), Gaps = 20/240 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 QV + VT+ V G Q + + + ++ Sbjct: 2 SRQVMVNVTVLAVTLTRGDNYGIQWDAVYQTLSRKYGLSNSLAKVANTNAFSAAILDTAT 61 Query: 253 R--FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--- 307 ++ AL +R ++ ++ Q Q Y S +T +V Sbjct: 62 SKLAGSAMMIEALSEQGRVRRETSASVVTLNNQPVPVQVAKQTSYLKSSQTTQVPNVGST 121 Query: 308 -----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKA 356 T G + P VL+ G + L+ T++S + + P R Sbjct: 122 TTLTPGTITTGFNMSILPNVLNNGTVLLQFSTDISSLRSLRTVSSSTASIETPETETRNF 181 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 V + S T++++G + D ++G+ P L + + I I TP Sbjct: 182 LQRVAMKSNETLIISGFEQTDDNLTQQGV----GTPANLLLGGSLGAGSNKEIIVIMITP 237 >gi|144897438|emb|CAM74302.1| conserved hypothetical protein, secreted [Magnetospirillum gryphiswaldense MSR-1] Length = 138 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 40/87 (45%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 A ++ V + + +G + + V V++ DP ADV V S + LFGK Sbjct: 7 AAVILTAFAVSSARADTLELGAGQSRRVDAGRGVAQVVIGDPKVADVSVDSAGRIQLFGK 66 Query: 93 NVGQANVILIGHDGKQMLNLDILIERD 119 G ++ ++G +G +L+ +++ Sbjct: 67 RAGSTSLTVLGRNGAVLLDHTVVVRAG 93 >gi|23016187|ref|ZP_00055946.1| COG0304: 3-oxoacyl-(acyl-carrier-protein) synthase [Magnetospirillum magnetotacticum MS-1] Length = 142 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 41/83 (49%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 AA++ + + + + L I+L + V+ V+V +P ADV V P ++ +FGK Sbjct: 10 AALVWAAPQAAQASEALELPLGGAIVLPMRGGVRTVVVGNPAIADVSVDGPGSVTVFGKG 69 Query: 94 VGQANVILIGHDGKQMLNLDILI 116 G +++ + G + +++ Sbjct: 70 PGATSLVALDAGGGVLAERQVVV 92 >gi|325107410|ref|YP_004268478.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] gi|324967678|gb|ADY58456.1| type II and III secretion system protein [Planctomyces brasiliensis DSM 5305] Length = 1546 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T V +P GGT++L G+ + + G+P+L+KIP + LF+N+ RE + + T Sbjct: 1469 VQTVVSVPDGGTVLLGGVKRLREGRNMAGVPILNKIPYVSRLFKNTGVGRETESLMLMVT 1528 Query: 416 PFLV 419 P ++ Sbjct: 1529 PRII 1532 Score = 40.4 bits (93), Expect = 0.69, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 8/123 (6%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 S G F E G VL + A + + P +T +GQ A Sbjct: 1242 GSFQVGVPDFGNFNPEVGIQVGFAVLSDIEAFFFIQAAQADERSNIMFAPKVTLFNGQIA 1301 Query: 286 SFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVS 337 S Q + + + + ++ GV L + + R + L + + Sbjct: 1302 SVNDQVQRPFVISVTPSVSVFNVGFQPQISFISEGVSLTVQAVISADRRYVRLSVLPTFT 1361 Query: 338 EPV 340 Sbjct: 1362 NIT 1364 >gi|153008055|ref|YP_001369270.1| hypothetical protein Oant_0719 [Ochrobactrum anthropi ATCC 49188] gi|151559943|gb|ABS13441.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188] Length = 139 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 45/81 (55%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I++ ++ IL++ V++ +P+ AD VV +T+ L GK+ G N++++ G+ + Sbjct: 36 IALETSQARILRLARPADSVVIGNPSIADAVVQDAQTIVLTGKDFGVTNIVVMDKQGEPI 95 Query: 110 LNLDILIERDIAHLEMTLRRF 130 L+ ++++ R+ R+ Sbjct: 96 LDRELVVSRNARGTTRIYRQA 116 >gi|269123031|ref|YP_003305608.1| Type II secretory pathway component PulD-like protein [Streptobacillus moniliformis DSM 12112] gi|268314357|gb|ACZ00731.1| Type II secretory pathway component PulD-like protein [Streptobacillus moniliformis DSM 12112] Length = 312 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 92/299 (30%), Gaps = 50/299 (16%) Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 E + + +++ V D +L G + + +L S + Sbjct: 59 ENEILKLDGSFGVKIRKVGDKYILSG------EKKNISKLKHIIYSIDKIKKQIIIKMNV 112 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 + ++ + LK E ++ KF+ Sbjct: 113 IDTSISFFDRFGLNLK---LEENKND-----------------------GLVAKFLENKL 146 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 S L + AL+++ + + P++ + G + +S Sbjct: 147 SLSNLLNLGGAKLGLDIEALKQSGDMYIKSFPSIMVLDNSE-----GEMRITDELSFKVS 201 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 V T + G++ P +++ G + L I +E+S +T V Sbjct: 202 EKKVQTSEAGLIFKIKPRIVTKGYKEFVELEIYSEISSFKSEK------VRSKNILNTKV 255 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 L + ++G+ ++ P IPI LFR N+E+ I++ ++ Sbjct: 256 LLKDKTSTFISGVGRESKSINISN-P---SIPIFSTLFRKKSKNKEKRNIYVEVEVEIL 310 >gi|260461953|ref|ZP_05810198.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] gi|259032200|gb|EEW33466.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] Length = 141 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 40/81 (49%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 V G I + +N+ I+++ ++V +P+ AD V T+ L GK G N+++ Sbjct: 21 VPARAGTGIEVTMNQAKIVKLSRPADTIVVGNPSIADASVQDASTIVLTGKGFGVTNLVV 80 Query: 102 IGHDGKQMLNLDILIERDIAH 122 + +G +++ + + R A Sbjct: 81 LDQEGSPIVDAQVTVVRQAAS 101 >gi|295690803|ref|YP_003594496.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC 21756] gi|295432706|gb|ADG11878.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC 21756] Length = 132 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 41/80 (51%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 N+ + + + + I L + ++DV+V DP ADV + + RT+ + GK G Sbjct: 16 NVDAAAQSRPAALPLATGQAISLSLGGAMRDVVVGDPEVADVSIVNERTLVVLGKRPGVT 75 Query: 98 NVILIGHDGKQMLNLDILIE 117 N+++ G G+ + + +++ Sbjct: 76 NLLVFGAGGRALTDRQLIVS 95 >gi|296120909|ref|YP_003628687.1| hypothetical protein Plim_0641 [Planctomyces limnophilus DSM 3776] gi|296013249|gb|ADG66488.1| hypothetical protein Plim_0641 [Planctomyces limnophilus DSM 3776] Length = 1566 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 40/72 (55%) Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P TTV +P GGT++L G+ + + G+P+L+KIP + LF+NS RE Sbjct: 1481 LPVVEQVTVLTTVSVPDGGTVLLGGVKRLREGRNMAGVPILNKIPYVSRLFKNSGVGRET 1540 Query: 408 TEIFIAATPFLV 419 + + TP +V Sbjct: 1541 ESLMLMVTPRIV 1552 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 23/158 (14%) Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFG---------------GKFVSEGGDFSVKGV 250 R+ ++ +Q T G SF D G F G + + Sbjct: 1232 TRNTTQRSSYQKGGTIVGLGSQNSFTPDLDIPFRQGSFDIGVPDFGGFDPTAGITTGLAI 1291 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----- 305 L + A + + L P LT +GQ+A+ + + T ++T Sbjct: 1292 LSDLEAFFFIQAAQGDSRSNLLFAPKLTLFNGQTATVSDTVNRFFVTGYNTTVGVGAAIQ 1351 Query: 306 --SVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPV 340 + GV L T + + R + L I + Sbjct: 1352 TPQIQQFPEGVSLTVTAVISADRRYVRLTIIPNFTSIT 1389 >gi|218506995|ref|ZP_03504873.1| pilus subunit transmembrane protein [Rhizobium etli Brasil 5] Length = 151 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 12/113 (10%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + ++ +L++ V V+V + AD V +T+ L G++ G N++L+ DG + Sbjct: 31 LRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 90 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 L+ IL+ D + +RV ++ VL Q +Q+A + Sbjct: 91 LDERILVSID------------EGNTVRVYRQTERSVLSCTPNCEQHAQQAAD 131 >gi|190889877|ref|YP_001976419.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652] gi|190695156|gb|ACE89241.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652] Length = 136 Score = 71.6 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 12/113 (10%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + ++ +L++ V V+V + AD V +T+ L G++ G N++L+ DG + Sbjct: 31 LRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 90 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 L+ IL+ D + +RV ++ VL Q +Q+A + Sbjct: 91 LDERILVSID------------EGNTVRVYRQTERSVLSCTPNCEQHAQQAAD 131 >gi|327194698|gb|EGE61544.1| pilus subunit transmembrane protein [Rhizobium etli CNPAF512] Length = 136 Score = 71.6 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 12/113 (10%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + ++ +L++ V V+V + AD V +T+ L G++ G N++L+ DG + Sbjct: 31 LRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 90 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 L+ IL+ D + +RV ++ VL Q +Q+A + Sbjct: 91 LDERILVSID------------EGNTVRVYRQTERSVLSCTPNCEQHAQQAAD 131 >gi|87120224|ref|ZP_01076119.1| general secretion pathway protein (PilQ) [Marinomonas sp. MED121] gi|86164327|gb|EAQ65597.1| general secretion pathway protein (PilQ) [Marinomonas sp. MED121] Length = 57 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 31/56 (55%) Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G T+ L GL+ ++ +Q + G+P+L +P +G LFR+ + E+ + ++ Sbjct: 2 DGETMALGGLVSEETRQSESGVPMLKDLPFIGRLFRSESKETVQRELTVLIKTQIL 57 >gi|308094756|ref|ZP_07663037.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AN-5034] gi|308089670|gb|EFO39365.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AN-5034] Length = 449 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 34/162 (20%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I + + ++G + T + + Sbjct: 288 REIIESLDIP-VKQVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 346 Query: 230 -------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAI 269 + + F V + + L AL++ + Sbjct: 347 YEGGGDGEGEEGGVGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKA 406 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 ++ P L + + A G + Y SSS+GATSVT Sbjct: 407 EIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATSVTFKK 447 >gi|290243112|ref|YP_003494782.1| type II and III secretion system protein [Thioalkalivibrio sp. K90mix] gi|288945617|gb|ADC73315.1| type II and III secretion system protein [Thioalkalivibrio sp. K90mix] Length = 551 Score = 71.2 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 83/258 (32%), Gaps = 26/258 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTI--AEVRRDILKQIGFQHSITGSS-----SGPSKSFAADFG 235 ++ +N QV++ V I E + L+ + + ++ S P + + D Sbjct: 291 DYVDNMNDTFSRQVSVDVQIYRVEATENELRGVNWNALFNNNNMEFEVSSPGGNASGDVS 350 Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 V + + E + +LE + + TL ++ Q A G Y Sbjct: 351 PGGVRLSVPDGAGTLSNLVGSEGFIASLEEIGDVSEVTSTTLQTVNNQPAPVRIGQTVSY 410 Query: 296 KTVSSSTGATSVTTH--------DYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPV 340 S T +V + D G + P V GR I L + E Sbjct: 411 LEEVSQTDTANVGSQASLTPGEVDVGFSMQLLPHVQDNGRDMLMQVMITLSTLDRLEEFS 470 Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 G +P R L SG +VLAG + GI + + LG N Sbjct: 471 SGDQTIQLPEVSSRDFVQRTWLQSGEALVLAGFESIQANLARSGI-IDADKWALG---GN 526 Query: 401 SRFNREETEIFIAATPFL 418 R + I TP + Sbjct: 527 RRAENTRESLIIVMTPTV 544 >gi|150377244|ref|YP_001313839.1| hypothetical protein Smed_5129 [Sinorhizobium medicae WSM419] gi|150031791|gb|ABR63906.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 170 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 44/111 (39%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72 L + ++ E + V+ + +G + ++ + +P V++ Sbjct: 7 GAVLLLAMSALVSPATADEQKSPVVPVQQKSVGADGVERLVVDFAKTVTLPRPASTVIIG 66 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + A + RT+ L GK G N+I+I DG ++ NL + + L Sbjct: 67 NTGIAQASLSDDRTVILTGKTPGSTNLIVIDRDGAEVANLILDVVAGSGRL 117 >gi|310765409|gb|ADP10359.1| hypothetical protein EJP617_06780 [Erwinia sp. Ejp617] Length = 559 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 78/252 (30%), Gaps = 29/252 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAADFGGKFVSEGG----DF 245 QV L + I V + +Q+G + S G S + + + G D Sbjct: 313 SRQVQLNIQIVSVSQSRNEQLGLDWGLIYRSLNNYGASLTGSMASASSSAASAGISILDT 372 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAE---------PTLTAISGQSASFTSGGQHLYK 296 + ++ AL + P +S Q S Sbjct: 373 ATGNAAKFSGSSMLIKALSEQGNVSMALNQTDPTANLIPVAYQLSNQKG-ILSSSSSTAT 431 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI--------QTEVSEPVIGVNAGDM 348 T + TT G+ + P + G + L+ Q E G D+ Sbjct: 432 ANVGVTSTMTTTTITTGLFMTMLPFIQENGDVQLQFAFSYTSPPQIEKFISADGNTRNDL 491 Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408 P+ V L SG T+VL G + ++ K+G I+G R T Sbjct: 492 PTTSTEGLTRKVNLRSGQTLVLTGSEQQNVSTDKQGTFTPGNF-IMG---GGQAGTRGRT 547 Query: 409 EIFIAATPFLVK 420 + I TP L++ Sbjct: 548 TLVIMITPVLLR 559 >gi|323970458|gb|EGB65719.1| R64 PilN family protein type IVB pilus formation outer membrane protein [Escherichia coli TA007] Length = 336 Score = 70.8 bits (172), Expect = 5e-10, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 97/276 (35%), Gaps = 28/276 (10%) Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222 L+ FL+ + + ++ S+ V N QV L V + VR+ Q G + S Sbjct: 70 LATGFLTVTDTPRVLDTVSRFV-EARNREMRRQVVLNVEVLSVRKTRRDQAGIDWNAVFS 128 Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGV----LDRFSFETVLHALERATAIRTLAEPTLT 278 GG F S D GV + L AL + + + + Sbjct: 129 DG----RLGLTLGGAFSSAADDIITSGVSIVDGKLTGSKAFLKALSSQGTVSVVTQNSAV 184 Query: 279 AISGQSASFTS----GGQHLYKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGR--- 327 + G T +++ TS + T G + P + R Sbjct: 185 TKNMTPVPMQVASQQGYIESVTTDTTANVGTSTSLNAATITTGFNMTLLPFIQPDARSLQ 244 Query: 328 ----IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 + L + G + +P+ ++ + T++L SG T++L+G + + +++ Sbjct: 245 LLFSMNLSDKPTFEVFESGGSRAQVPTVDLKTINQTIDLKSGQTVILSGFRQSGSKSVRQ 304 Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G+ G L + ++T + + TP ++ Sbjct: 305 GV---GSPAFFG-LGGGTDSGDDDTILVVLITPHVI 336 >gi|218671456|ref|ZP_03521126.1| pilus subunit transmembrane protein [Rhizobium etli GR56] Length = 135 Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 12/112 (10%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + ++ +L++ V V+V + AD V +T+ L G++ G N++L+ DG + Sbjct: 31 LRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 90 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 L+ IL+ D + +RV ++ VL Q +Q+A Sbjct: 91 LDERILVSID------------EGNTVRVYRQTERSVLSCTPNCEQHAQQAA 130 >gi|238899395|ref|YP_002925078.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467157|gb|ACQ68930.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 560 Score = 70.5 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 94/265 (35%), Gaps = 47/265 (17%) Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFGGKFVSEGGD 244 NI QV LKV + V + Q G ++ S G + A + G + G + Sbjct: 307 NIKLSKQVLLKVVVYTVHTETADQSGIDWNVIFKSLSGKYGIHVANAFNAGSNLANGGFE 366 Query: 245 FSVKGVLDRFSFET---VLHALERA---TAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295 + +L AL + ++TL+ + + +A G Q Y Sbjct: 367 ILPTATGRASQWAGSQFLLKALSEQVKVSDVKTLS---IMTTNLATAGMQIGKQTTYLRK 423 Query: 296 ---KTVSSSTGATSVTTHD-----YGVVLHFTPTVLS-PGRIGLRIQTEVS--------E 338 T +++TGA V + + G ++ P +L ++ L + ++S E Sbjct: 424 TSVTTGNTTTGAEPVQSLEPGEITTGTNINIMPKILEGNDKMMLTMMMDISSLNRLRRIE 483 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-- 396 + + P R V L G T++++G ++ + G+ G+ Sbjct: 484 NRNKTESIEAPDTDSRSIPQRVWLKPGETVLMSGFEQNIQDGSQRGV---------GSSR 534 Query: 397 --LFRNSRFNREETE-IFIAATPFL 418 LF + + E I TP L Sbjct: 535 HFLFGGGMSGKSKKESFVITITPLL 559 >gi|319785612|ref|YP_004145088.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171500|gb|ADV15038.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 140 Score = 70.5 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 38/77 (49%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 G I + +N+ I+++ ++V +P AD V T+ L GK G N++++ D Sbjct: 25 AGAGIEVTMNQAKIVKLSRPADTIVVGNPAIADASVQDASTIVLTGKGFGVTNLVVLDTD 84 Query: 106 GKQMLNLDILIERDIAH 122 G +++ + + R A Sbjct: 85 GSPIVDEQVTVVRQAAS 101 >gi|327413080|emb|CAX68109.1| putative pilus assembly protein [Salmonella enterica subsp. enterica] Length = 562 Score = 70.5 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 80/250 (32%), Gaps = 29/250 (11%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAADFGGKFVSEGG----DFS 246 Q+ L V I V + +++G + SS G S + + + G D + Sbjct: 317 RQIQLDVKIMSVTQTRNEELGLDWDLVYSSLRNYGVSVKGSFNNASSGAASGAYSILDTA 376 Query: 247 VKGVLDRFSFETVLHALERATAIRTL-AEPTLTA--------ISGQSASFTSGGQHLYKT 297 ++ AL + + ++ T +S Q S Sbjct: 377 TGSARHFAGSNLIMKALSEQGDVSVVTSQSRATTNLTPVPYQLSNQQGILVSSSSTPTAN 436 Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--------VIGVNAGDMP 349 V T S + G+ + P + G + L+ P G D P Sbjct: 437 V-GVTSTMSTSMLTTGLFMTAVPYIEENGNVQLQFAFSYDSPPKIESFFSADGNTRNDTP 495 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 +Y V + +G T++L G + + ++G + + G + + T Sbjct: 496 NYSREAFTQKVNMKAGQTLMLTGSDQLSVSADRQGT-GSADNFLFG---GGRKGTNKRTT 551 Query: 410 IFIAATPFLV 419 + I TP L+ Sbjct: 552 LIILITPILM 561 >gi|218461610|ref|ZP_03501701.1| pilus subunit transmembrane protein [Rhizobium etli Kim 5] Length = 124 Score = 70.1 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 12/112 (10%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + ++ +L++ V V+V + AD V +T+ L G++ G N++L+ DG + Sbjct: 19 LRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 78 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 L+ IL+ D + +RV ++ VL Q +Q+A Sbjct: 79 LDERILVSID------------EGNTVRVYRQTERSVLSCTPNCEQHAQQAA 118 >gi|189017140|ref|YP_001909457.1| Lipoprotein [Erwinia tasmaniensis Et1/99] gi|188027077|emb|CAO94861.1| Lipoprotein [Erwinia tasmaniensis Et1/99] Length = 568 Score = 70.1 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 85/251 (33%), Gaps = 29/251 (11%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAADFGGKFVSEGG------DF 245 QV LKV I V D+ +G S+ + +G A GG V G D Sbjct: 321 SRQVNLKVVIYTVNSDVSDAVGLDWSVIYKTLAGKYGINLAGPGGSIVDAGSLSFSVLDT 380 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH---------LYK 296 + + AL + + + L + SAS G Q +Y Sbjct: 381 ATGSARQFAGSSFLFDALSKQAKVADVRTIPLMTSNMASASVVVGRQIAYLKSVATTVYS 440 Query: 297 TVSSSTGATSVTTHDY--GVVLHFTPTVLSPG-RIGLRIQTEVS------EPVIGVNAGD 347 T +S+ + ++T G + P VL G R+ L + +S + + Sbjct: 441 TGNSTLPSQTLTPGSVTTGTNITIFPKVLDGGDRMMLNMFLNISSLIQLRQISSDTEKLE 500 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 P R V L G T+V++GL ++ KEG+ + G Sbjct: 501 APEVDSRSVPQRVWLKPGQTVVISGLEQNVTNVNKEGM-FSPDNIVTG---GKRSGGSIR 556 Query: 408 TEIFIAATPFL 418 I TPF+ Sbjct: 557 QSFVITVTPFI 567 >gi|222084464|ref|YP_002542993.1| hypothetical protein Arad_0357 [Agrobacterium radiobacter K84] gi|221721912|gb|ACM25068.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 139 Score = 70.1 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 45/101 (44%) Query: 29 IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88 A A + + + ++ +L++ V V+V + AD V P+T+ Sbjct: 11 AGVAAMAGLMPQLSRAADDGMLRVYMDHARVLKLDRPVSKVIVGNAQVADATVADPKTIV 70 Query: 89 LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 L G++ G N++L+ DG +++ IL+ D + R+ Sbjct: 71 LTGRSFGTTNIVLLDADGNAIVDERILVSIDEGNTVRVFRQ 111 >gi|209551755|ref|YP_002283672.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537511|gb|ACI57446.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 136 Score = 70.1 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 12/112 (10%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + ++ +L++ V V+V + AD V +T+ L G++ G N++L+ DG + Sbjct: 31 LRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 90 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 L+ IL+ D + +RV ++ VL Q +Q+A Sbjct: 91 LDERILVSID------------EGNTVRVYRQTERSVLSCTPNCEQHAQQAA 130 >gi|304320642|ref|YP_003854285.1| hypothetical protein PB2503_05347 [Parvularcula bermudensis HTCC2503] gi|303299544|gb|ADM09143.1| hypothetical protein PB2503_05347 [Parvularcula bermudensis HTCC2503] Length = 178 Score = 70.1 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 58/156 (37%), Gaps = 2/156 (1%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A + + + ++ + LN + + ++V +P ADV V + + LFGK Sbjct: 8 AVIAATALAPTAQAGEMWLTLNDARFHETAKPISSIVVGNPAIADVTVRTKTNIILFGKM 67 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153 G + L G+ + L + + ++ +TL+ V + + G Sbjct: 68 PGATTITLFDARGEVIDRLALKVRNASNNV-VTLQAGENRYTFSCTTVCEQIPAIGDGSN 126 Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189 ++ A ++E R ++ S V+ L Sbjct: 127 ESRAELA-SVAEQAQQAVTRASAGDNPSNSVVESLE 161 >gi|13474655|ref|NP_106224.1| hypothetical protein mll5591 [Mesorhizobium loti MAFF303099] gi|14025410|dbj|BAB52010.1| mll5591 [Mesorhizobium loti MAFF303099] Length = 129 Score = 70.1 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 37/77 (48%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 I + +N+ I+++ ++V +P AD V T+ L GK G N++++ + Sbjct: 14 AAADIEVTMNQAKIVKLSRPADTIVVGNPAIADASVQDASTIVLTGKGFGVTNLVVLDQE 73 Query: 106 GKQMLNLDILIERDIAH 122 G +++ + + R A Sbjct: 74 GSPIVDAQVTVVRQAAS 90 >gi|124514594|gb|EAY56106.1| probable type IV pilus biosynthesis protein [Leptospirillum rubarum] Length = 610 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 94/296 (31%), Gaps = 33/296 (11%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQS-GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 + V++I SQ ++++ + + + + +N + V LKV + +V Sbjct: 322 ISQSVKSILGSQGNFSIAQSAGTITVTTTPRIMGEVARYVREINDSLSRHVWLKVEVLDV 381 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---VLDRFSFETVLHA 262 + F + S S A S G + L S V+HA Sbjct: 382 SLENQNTNSFNLTAALHGLMKSGSLAVTGQPGVFSLAGATPITTSTLTLPSSSTNAVIHA 441 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGATSVT-----THDYG 313 L + + +T ++ Q+ + Y + + G ++ T T G Sbjct: 442 LSTQGKVSVVTRSFVTTLNDQAVPVQNVQNIGYLMENLAGIAGIGQSTFTQNIPGTVTVG 501 Query: 314 VVLHFTPTVLSPGRIGLRIQTE----VSEPVIGVNAGDM--PSYRVRKADTTVELPSGGT 367 + P +L + L + + + N G + P+ R V+L SG T Sbjct: 502 FTMTLVPHLLDDKEMLLGVSIDDTNLNQMQTLQSNGGSIQLPNTSQRSFMQWVKLTSGET 561 Query: 368 IVLAGLLKDDI--QQLKEGIP---LLSKIPILGALFRNSRFNREETEIFIAATPFL 418 V+ G + QQ G P + I I TP + Sbjct: 562 AVIGGYEQTRRVFQQNGTGTPSNFWMG---------GGQNAETVRDAIVILVTPVV 608 >gi|331660223|ref|ZP_08361158.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli TA206] gi|331052490|gb|EGI24526.1| type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli TA206] Length = 548 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 94/294 (31%), Gaps = 40/294 (13%) Query: 158 QRAVELSETFLSQSGRNQYANSS-------SKKVMNLL-------NIAGEDQVTLKVTIA 203 LS G + A S + +V+N + N + QV LKV + Sbjct: 260 DDIKATVSAMLSAEGSSWLAPGSATLTVTDTPEVLNRIGEYIERQNAILDRQVKLKVDVY 319 Query: 204 EVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 + KQIG + S++ G + + FG E ++ A Sbjct: 320 RITFRDTKQIGIDWTAVYSAARGMGYTLTSAFGDAASDVATIGVTSSSGRLSGSEVLIKA 379 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD-------YGVV 315 L + I + + A + Y +S+T + S ++ + G+ Sbjct: 380 LNQQANISSATTTNTVTTNMVPAPLQIAKETTYLAKTSTTTSDSYSSTELEPGTITTGLF 439 Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGT 367 + P + G I L++ +S+ G + P+ VR L G T Sbjct: 440 MTVLPYIRDNGTIQLQMSFSLSDDPTITTVSAKDGSTSIQTPTTDVRSLTQRANLKPGQT 499 Query: 368 IVLAG---LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +VL G L + +Q G R+ + + + TP L Sbjct: 500 LVLNGFQSLYNEANRQGTTSKSWFG----FG---GGESAERDRSMLLVLVTPVL 546 >gi|153878167|ref|ZP_02004504.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152065369|gb|EDN65496.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 93 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFL 418 + + G IV+ GL++ + Q K+GIP L P++G+ LF ++ N + TE+ + P + Sbjct: 1 MVVRDGTAIVIGGLIQVNNQDDKQGIPGLQDFPLIGSILFSSTSNNDKHTELVLIIIPEV 60 Query: 419 VKPVA 423 V P A Sbjct: 61 VNPAA 65 >gi|315497470|ref|YP_004086274.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48] gi|315415482|gb|ADU12123.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48] Length = 141 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 44/103 (42%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A +S KI + N + +P V+V +P ADV V RT+Y+ G+ Sbjct: 12 ALTALLSAGAAEAASKIVVEKNHSTRVVLPASAGSVIVGNPEVADVTVVDSRTIYIMGRG 71 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136 G+++V + G+ + + D+++ + + + I Sbjct: 72 FGRSSVSVTDSAGRNIFDADVMVGTPVEGGVTVYKGLKPSTMI 114 >gi|329847248|ref|ZP_08262276.1| outer membrane channel protein [Asticcacaulis biprosthecum C19] gi|328842311|gb|EGF91880.1| outer membrane channel protein [Asticcacaulis biprosthecum C19] Length = 158 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 22/136 (16%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M + R ++ + L ++ P++A G+ +++ N + + Sbjct: 1 MTFSIRAALSVTAFGLMAAVPALA----------------------GQPVTVEKNHTLRV 38 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + V+V +P ADV V RT+Y+ GK G + V + G DG+ + + ++ + Sbjct: 39 TLVAPAGTVVVGNPDIADVTVVDSRTLYIVGKGFGSSAVNVAGRDGRSLFDGEVTVTAPK 98 Query: 121 AHLEMTLRRFIADSNI 136 + + Sbjct: 99 RGAITVYKGLKPSLMV 114 >gi|110636420|ref|YP_676628.1| hypothetical protein Meso_4096 [Mesorhizobium sp. BNC1] gi|110287404|gb|ABG65463.1| conserved hypothetical protein [Chelativorans sp. BNC1] Length = 137 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 38/71 (53%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I I +N+ I+++ V++ +P AD VV +T+ L GK G N++ + +G+ + Sbjct: 28 IGIVMNQAKIIKLVRPADTVVIGNPEIADAVVQDAQTIVLTGKGFGVTNIVALDVEGRPI 87 Query: 110 LNLDILIERDI 120 ++ + + R Sbjct: 88 MDEQVRVSRQT 98 >gi|238755356|ref|ZP_04616698.1| hypothetical protein yruck0001_7710 [Yersinia ruckeri ATCC 29473] gi|238706391|gb|EEP98766.1| hypothetical protein yruck0001_7710 [Yersinia ruckeri ATCC 29473] Length = 540 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 84/252 (33%), Gaps = 19/252 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + +N N+ QV L V + V + Q+G +S S F G + Sbjct: 292 RYINERNVELNRQVVLNVQVYSVEKRTQDQLGIDLDAVFNSGSVGLSLTNAFTGSASNVL 351 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + + AL + + E + + + Q Y + S+ Sbjct: 352 SGGVSILDGKGKGSKGFIKALSEQANVSVMTEASSMTTNLSAVPIQVALQQDYASGVSTQ 411 Query: 303 GATSV--------TTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP------VIGVNAGD 347 +V +T G + P ++ ++ L+ +S+ G + + Sbjct: 412 NTANVGSTSTITKSTITTGFNMTVLPFLVPQSPKMQLQFAINISDDPTMRTFSSGDTSVE 471 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 + R++ V + SG T+VL+G ++G+ G L + + Sbjct: 472 LTKTRLKTFTQRVNMQSGQTLVLSGYQSLGKTVDRQGV---GSFRFWG-LGGGANGENNK 527 Query: 408 TEIFIAATPFLV 419 T + I TP ++ Sbjct: 528 TMLVILITPVIL 539 >gi|218691155|ref|YP_002399367.1| putative type IV pilus outer membrane secretin lipoprotein [Escherichia coli ED1a] gi|218428719|emb|CAR09511.1| putative type IV pilus outer membrane secretin lipoprotein [Escherichia coli ED1a] Length = 533 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 94/294 (31%), Gaps = 40/294 (13%) Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 +VL T+ D+ + ++ + F+ + R QV L + I Sbjct: 263 GRMVLSTGFLTVTDTPQVLDTVKNFMEERNREM-----------------RRQVVLNIEI 305 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--VSEGGDFSVKGVLDRFSFETVL 260 +++ +Q G + S + F V G + G L + L Sbjct: 306 LSIKKTSKEQAGIDWNAVFSDGHLGIDLTSAFTNAADEVVTSGVSIIDGKLTGS--KAFL 363 Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDY 312 AL + + + + + Q Y ++ +V T Sbjct: 364 KALSSQGKVSVVTQNSAVTKNLTPVPMQVASQQGYIESVTTDTTANVGSSTSLNAATITT 423 Query: 313 GVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365 G + P + + L + G + PS ++ + T++L S Sbjct: 424 GFNMTLLPFIQPGSHRLQLLFSMSLSDKPVFEVFESGGSRAQTPSVELKTINQTIDLKSD 483 Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 T++L+G + + L++G+ G L ++T + + TP ++ Sbjct: 484 QTVILSGFQQFSRKSLRQGV---GTPSFFG-LGGGVDSADDDTILVVLITPHVI 533 >gi|328545283|ref|YP_004305392.1| Possible pilus assembly protein (CpaC) [polymorphum gilvum SL003B-26A1] gi|326415025|gb|ADZ72088.1| Possible pilus assembly protein (CpaC) [Polymorphum gilvum SL003B-26A1] Length = 157 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 47/92 (51%), Gaps = 3/92 (3%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + + +++ +++ + ++ V+V +P+ ADV +H T+ + GK G N+++ Sbjct: 23 AAAAETEPVAVTVDRAKVFRIEAPADTVIVGNPSIADVTMHDRFTVVVTGKTFGTTNLVI 82 Query: 102 IGHDGKQMLNLDILIER---DIAHLEMTLRRF 130 + D + +++ I++ D+ + L R+ Sbjct: 83 LDKDSQPIIDEVIVVRPPETDVVTVTRNLNRY 114 >gi|154250684|ref|YP_001411508.1| hypothetical protein Plav_0228 [Parvibaculum lavamentivorans DS-1] gi|154154634|gb|ABS61851.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1] Length = 172 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 41/82 (50%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 V + + +NK L + V+V +P+ ADV V + +Y+ G++ G+ N+I Sbjct: 27 AVSASQAADFQVEMNKSKALHLGQPASTVMVGNPSIADVTVEGSKLLYVMGRSYGRTNII 86 Query: 101 LIGHDGKQMLNLDILIERDIAH 122 + G+ +L++++ + A Sbjct: 87 ALDSSGETILDINVNVVSQSAS 108 >gi|296444401|ref|ZP_06886366.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] gi|296258048|gb|EFH05110.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] Length = 155 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF-GKN 93 AV+ + + + + + +++ ++++P Q +++ +P ADV + + + GK+ Sbjct: 17 AVMGATSRSFAEQRALYVDIDRARVVRMPDGAQTIIIGNPLVADVTMLKANRLLVVTGKS 76 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAHL 123 G N+IL+ G +++ I + L Sbjct: 77 FGTTNLILLDESGGEVVEQTITVTPASDKL 106 >gi|332308903|ref|YP_004436753.1| hypothetical protein Glaag_4580 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176232|gb|AEE25485.1| hypothetical protein Glaag_4580 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 506 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 86/259 (33%), Gaps = 31/259 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSFAADFGGKFV 239 + + N QV + I + + ++ + + S+ S DF G V Sbjct: 256 RDAIQAENRKATAQVYFDIKIVDYQDEVGSEYSLNWDVVSKNLSAEGVVSLTNDFSGSLV 315 Query: 240 SEGGDFSVKG----VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G +V G + AL+ + + EP +T + + +G Y Sbjct: 316 D--GTAAVLGYSKESGKYAGSSAFISALDNQGVVYNVIEPKITLRNNRIGKVINGADTTY 373 Query: 296 KTVSSSTGATSVTTH-------DYGVVLHFTPTVLSP-----GRIGLRIQTEVSEPVIGV 343 S S T+ +T G+ L+ + G I + + V + Sbjct: 374 LASSGSASTTTSSTGILIPGIVSTGLNLYAVANINLDDMSVIGAIANKYASLVDIGSVTS 433 Query: 344 NAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + + P ++ + G TI+L+GL + + + + LF + Sbjct: 434 DDATIQTPETTRKEFHQEFFVRDGETILLSGL-RSRLSEYNSSVAG-------SMLFGGT 485 Query: 402 RFNREE-TEIFIAATPFLV 419 + + + T I TP ++ Sbjct: 486 KGSADTYTNTVILLTPRII 504 >gi|159184220|ref|NP_353258.2| hypothetical protein Atu0226 [Agrobacterium tumefaciens str. C58] gi|159139548|gb|AAK86043.2| PilQ [Agrobacterium tumefaciens str. C58] Length = 127 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 40/80 (50%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + +N +L++ V V+V + AD V T+ L G++ G N++L+ +G + Sbjct: 22 LRVSMNHARVLRLDRPVSKVIVGNSKVADATVADATTIVLTGRSFGTTNLVLLDAEGNPI 81 Query: 110 LNLDILIERDIAHLEMTLRR 129 ++ IL+ D + R+ Sbjct: 82 VDERILVSIDEGNTVRVFRQ 101 >gi|58038376|ref|YP_190345.1| PilN [Gluconobacter oxydans 621H] gi|58000790|gb|AAW59689.1| PilN [Gluconobacter oxydans 621H] Length = 571 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 100/297 (33%), Gaps = 40/297 (13%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKV------MNLLNIAGEDQVTLKVTIAEVRR 207 + + ++ + + +V ++ L+ + QV + V + ++ Sbjct: 280 QKTADTIANGAQVIADEGLGTLSVTGNPDQVTRVSDWIHSLSESLMQQVAIDVHVYTLKE 339 Query: 208 DILKQIGFQHSITGSSSGPSKSF-----------AADFGGKFVSEGGDFSVKGVLDRFSF 256 GF I + G D F + D + Sbjct: 340 THETNYGFSPQIALKNYGKVYGLSMIPAAIPGMQTNDIPFSFGASILDTAKGAAGQFSGS 399 Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYG 313 + + AL + + + A +G SA F +G Y SS+ + A S T G Sbjct: 400 QLAIQALSELGNVTEMYSRSAVATNGMSAPFQNGINTTYLANSSTVLASNAGSSATLSPG 459 Query: 314 VVL-----HFTPTVLSPGRIGLRI----QTEVSEPVIGVNAGDM--PSYRVRKADTTVEL 362 VV+ TP ++ RI L I QT +S N + P D TV L Sbjct: 460 VVMSGFMGEITPRIV-DQRILLHINFLLQTLLSIQTFQSNGSSIQEPKTSSTSLDDTVVL 518 Query: 363 PSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPF 417 SG T++L+G + D + + G+ PL LG ++T++ + Sbjct: 519 RSGSTLMLSGYVDDSSSRDRTGVGSPLF----WLGG--GGGDAQTQKTQVIVTVEAH 569 >gi|255022020|ref|ZP_05294026.1| PilN [Acidithiobacillus caldus ATCC 51756] gi|254968506|gb|EET26062.1| PilN [Acidithiobacillus caldus ATCC 51756] Length = 544 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 94/301 (31%), Gaps = 35/301 (11%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L + +T+ + V + T + + L + QV + V + V Sbjct: 251 LSKVAQTVAGGGQVVVDASTGTVTVTGTPPEVRRVRDWVQGLARQLQRQVAITVHVYNVN 310 Query: 207 RDILKQIGFQHSITGSSSG------------PSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 + + G S S G PS S + + + Sbjct: 311 LNNEQNYGLNLSGAFQSLGRQYGVTLQGVAPPSVSSGGPAPLSLGANILSSATGALGQWQ 370 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD--- 311 + AL + + + +++G+ Q Y SS+T +V T Sbjct: 371 GSSIAVQALATLGHVTQVFSRSAISLNGEPTPIQVAQQTGYLAESSNTTTANVGTTSGLI 430 Query: 312 -----YGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTV 360 G F P ++ GRI L + +S G ++ +P+ +V Sbjct: 431 PGTVTTGFTAMFLPKIV-DGRILLGMNMTISNLVGIQTISSGGSSIQVPTVDSSTFQQSV 489 Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +L G T++L G + G+ P P+LG + + I I T + Sbjct: 490 KLKPGQTLLLTGYSQSQGSTTHNGVGSPYF---PLLG---GGADASLSRQMIAIVITARI 543 Query: 419 V 419 + Sbjct: 544 L 544 >gi|16263312|ref|NP_436105.1| hypothetical protein SMa1580 [Sinorhizobium meliloti 1021] gi|14523991|gb|AAK65517.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 170 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 44/111 (39%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72 L + ++ + E A+I + G + ++ + +P V++ Sbjct: 7 GAVLLLAMSALVRPAAADEQKTAIIPVQQRSTGAKGVERLVVDFAKTVALPRPASTVIIG 66 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + A + RT+ L GK G N+I+I DG ++ NL + + L Sbjct: 67 NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRL 117 >gi|307304369|ref|ZP_07584120.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] gi|306902571|gb|EFN33165.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] Length = 170 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 44/111 (39%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72 L + ++ + E A+I + G + ++ + +P V++ Sbjct: 7 GAVLLLAMSALVRPAAADEQKTAIIPVQQRSTGAEGVERLVVDFAKTVALPRPASTVIIG 66 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + A + RT+ L GK G N+I+I DG ++ NL + + L Sbjct: 67 NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRL 117 >gi|220923688|ref|YP_002498990.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060] gi|219948295|gb|ACL58687.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060] Length = 169 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 20/137 (14%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M+ + T + ++ L S P++++ + + + IL Sbjct: 1 MKRFRPTLHGVAAVALASLLPAMSQ--------------------AADTLDLTVGHSQIL 40 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120 + V + + DP AD + T+ + GK +G N+I + G ++L + + Sbjct: 41 RPGKAVGTIAIGDPDIADATTAAGGTILVTGKKIGTTNIIALDETGSEVLASTLRVVPID 100 Query: 121 AHLEMTLRRFIADSNIR 137 + ++ I Sbjct: 101 RRPKYSVDVIKGGQRIE 117 >gi|325291663|ref|YP_004277527.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3] gi|325059516|gb|ADY63207.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3] Length = 136 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 40/80 (50%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + +N +L++ V V+V + AD V T+ L G++ G N++L+ +G + Sbjct: 31 LRVSMNHARVLRLDRPVSKVIVGNSKVADATVADATTIVLTGRSFGTTNLVLLDAEGNPI 90 Query: 110 LNLDILIERDIAHLEMTLRR 129 ++ IL+ D + R+ Sbjct: 91 VDERILVSIDEGNTVRVFRQ 110 >gi|227823967|ref|YP_002827940.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234] gi|227342969|gb|ACP27187.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234] Length = 141 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 41/80 (51%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 ++ + + + ++ +L++ V V++ + AD V +T+ L G+N G N+ Sbjct: 26 AEKTDAAEQMMRVYMDHARVLKLDRPVSKVIIGNSDVADATVADSKTIVLTGRNFGTTNL 85 Query: 100 ILIGHDGKQMLNLDILIERD 119 +++ DG +++ IL+ D Sbjct: 86 VILDQDGNAIVDERILVSID 105 >gi|296100785|ref|YP_003610931.1| type IV pilus formation outer membrane protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055244|gb|ADF59982.1| type IV pilus formation outer membrane protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 557 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 91/287 (31%), Gaps = 34/287 (11%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLL-------NIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 S F S + + + V+N + N QV L + I V + +Q+G Sbjct: 275 SGRFWLSSATGTLSVTDTPDVLNRIGRYIEYQNKVLSRQVQLNIQIVSVNQTRNEQMGLD 334 Query: 217 HSITGSS---SGPSKSFAADFGGKFVSEGG----DFSVKGVLDRFSFETVLHALERATAI 269 + S G S + + + G D + ++HAL + Sbjct: 335 WGLVYKSLQNVGASLTGSMANASSSAASAGISILDTASGNAAKFSGSSLLIHALSEQGNV 394 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPT 321 T + ++ T SSST +V T G+ + P Sbjct: 395 SMALNQTDPTANLTPVAYQLSKSTGMLTSSSSTATANVGVTSTMTTTNVTTGLFMTMLPF 454 Query: 322 VLSPGRIGLRIQTEVSEP--------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + G + L+ + P G D V L SG T+VL G Sbjct: 455 IQENGDVQLQFAFSYTSPPDIKSFVSRDGNTRNDTADTSTEGLARKVNLRSGQTLVLTGS 514 Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 + ++ K+G ILG +R T + I TP L++ Sbjct: 515 EQQNVSADKQGTFTPGNF-ILG---GGQTGSRGRTTLVIMITPVLLR 557 >gi|207722770|ref|YP_002253205.1| type iv pilus biosynthesis protein [Ralstonia solanacearum MolK2] gi|206587952|emb|CAQ18533.1| putative type iv pilus biosynthesis protein [Ralstonia solanacearum MolK2] Length = 563 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 90/260 (34%), Gaps = 32/260 (12%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEG 242 + L+ QV + V I EVR + G S+ S +F S Sbjct: 311 VRTLDAMFGKQVAIDVRIYEVRLNQEDNYGLNLSLGYKSGNGHTGATFTGVAPPTVSSNA 370 Query: 243 GDFSVKGVLDRFSFETV---LHALERATAI-RTLAEPTLT----AISGQSASFTSGGQHL 294 SV + + + AL + + ++ +T ++ QSA+ Sbjct: 371 TPMSVGATIVGGKLDGTKVAVQALSTLGNVTQVVSRSGVTQNGKVMAMQSATLQDYIPSS 430 Query: 295 YKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMP 349 T++S+ G+TS G FTP V+ GRI + +S P+ G Sbjct: 431 QTTLASNVGSTSSMQTAPDISGFTSTFTPKVV-NGRILIMFDMTLSNLNPLQEQTQGSGA 489 Query: 350 SYRVRKADT--------TVELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFR 399 S + T TV L G ++VL GL G+ P IP+ G Sbjct: 490 SLSKVQLRTKPLARFQQTVGLKPGESLVLTGLRDQTTSTTNNGVGSPY---IPVAG---G 543 Query: 400 NSRFNREETEIFIAATPFLV 419 + ET I + T L+ Sbjct: 544 GVDAAKRETMIAVVITARLL 563 >gi|255609758|ref|XP_002539091.1| conserved hypothetical protein [Ricinus communis] gi|223508756|gb|EEF23292.1| conserved hypothetical protein [Ricinus communis] Length = 279 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 41/175 (23%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------------- 219 K ++ L++ QV ++ I E R + +G + Sbjct: 107 KALLATLDVP-VRQVLIEARIVEARDTFGRALGVRLGGGDLRAQRGGDGGYSIGGDNRVA 165 Query: 220 ------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-----------FETVLHA 262 ++S + A + G FV+ G S F+ L A Sbjct: 166 IGTGFDNANASAGASGQAVNTSGSFVNLPGKLSNVANSGTFAMSIFNAAANRFLTLELSA 225 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 +E + ++ P L A G ++ Y +V++ GAT++ + L Sbjct: 226 MESDGQGKIISSPRLVTADQTKALIEQGTEYPY-SVTAPNGATTIAFKKAVLKLE 279 >gi|163757621|ref|ZP_02164710.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica DFL-43] gi|162285123|gb|EDQ35405.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica DFL-43] Length = 136 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 57/126 (45%), Gaps = 12/126 (9%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63 + + + + + ++A L P+ + I + ++ IL++ Sbjct: 1 MTHSTPVRRRLAIAAFGMAIAVLSPL------------TAVADEDLIRVFMDHARILKLD 48 Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 V V++ + ADV V PRT+ L GK+ G N++++ +G+ +++ IL+ D A+ Sbjct: 49 RTVSKVIIGNAAVADVTVSDPRTIVLTGKSYGTTNLVILDQEGEAIVDERILVSVDEANT 108 Query: 124 EMTLRR 129 ++ Sbjct: 109 LRVFKQ 114 >gi|307318076|ref|ZP_07597512.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306896117|gb|EFN26867.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] Length = 170 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 43/111 (38%) Query: 13 SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72 L + ++ + E A+I G + ++ + +P V++ Sbjct: 7 GAVLLLAMSALVRPAAADEQKTAIIPFQQRSTGAEGVERLVVDFAKTVALPRPASTVIIG 66 Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 + A + RT+ L GK G N+I+I DG ++ NL + + L Sbjct: 67 NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRL 117 >gi|300021849|ref|YP_003754460.1| hypothetical protein Hden_0314 [Hyphomicrobium denitrificans ATCC 51888] gi|299523670|gb|ADJ22139.1| conserved hypothetical protein [Hyphomicrobium denitrificans ATCC 51888] Length = 170 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%) Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 + +L +P +V+V +P+ ADV + + + GK G NVI + + + ++ Sbjct: 44 QSQLLHLPRPASEVIVGNPSIADVTLQDGNLLVVTGKTFGITNVIALDAAHNVIQDQRVM 103 Query: 116 IERD 119 +ERD Sbjct: 104 VERD 107 >gi|213647736|ref|ZP_03377789.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 396 Score = 67.8 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 77/247 (31%), Gaps = 52/247 (21%) Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176 L+ L++ A NI++ DT L G V I+ +A+++++ Sbjct: 192 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 242 Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236 V L + I ++ + L+++G S + G Sbjct: 243 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 271 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 + + S LD F ++ALE ++ P L A F + K Sbjct: 272 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 331 Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351 + A T YG ++ P + G+I + + E + +P Sbjct: 332 LIGERNVALEHVT--YGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 389 Query: 352 RVRKADT 358 T Sbjct: 390 GRTLIST 396 >gi|187930905|ref|YP_001901391.1| PilN [Ralstonia pickettii 12J] gi|187728949|gb|ACD30112.1| PilN [Ralstonia pickettii 12J] Length = 561 Score = 67.8 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 91/257 (35%), Gaps = 32/257 (12%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDF 245 L+ Q+ + V I EVR G S+ S +F S Sbjct: 312 LDAMFGKQIGIDVKIYEVRLSQEDNYGLNLSLAYKSGNGHTGATFTGAGVPSVTSTASPM 371 Query: 246 SVKGVLDRFSFE---TVLHALERATAI-RTLAEPTLT----AISGQSAS---FTSGGQHL 294 + + + L AL + R L +T ++ Q A+ F G Q Sbjct: 372 TFGATIVGGKLDGTKAALQALSTLGNVSRVLQRGGVTQNGKVLALQDATLQDFVQGTQTT 431 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352 + ST A +T+ G +F P V+ GRI + +S +P+ +G S Sbjct: 432 LASNVGSTTAIQTSTNISGFTGNFRPKVI-NGRIMMVFDMTISELQPLQTFTSGSSASQS 490 Query: 353 VRKADT--------TVELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSR 402 + T +V L G T+VL G+ + GI P +P+LG Sbjct: 491 TVQLRTMPLARFEQSVGLRPGETLVLTGMREQSTSTTNNGIGSPY---MPLLG---GGVD 544 Query: 403 FNREETEIFIAATPFLV 419 +++T I + T L+ Sbjct: 545 AQKKDTMIAVVITARLL 561 >gi|167583028|ref|ZP_02375902.1| putative bacteriophage-related lipoprotein [Burkholderia thailandensis TXDOH] Length = 101 Score = 67.8 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLA 371 G++ PTV+ I L+++ E+S+ V D P+ R+ T L G +VL Sbjct: 1 GLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLG 59 Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 GL++D + G L + F +++ TE+ + Sbjct: 60 GLIQDRDATARSGYSWLP------SFFDGRSSSKQRTEVLLVL 96 >gi|220922544|ref|YP_002497846.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060] gi|219947151|gb|ACL57543.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060] Length = 217 Score = 67.8 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + I V I VP + DVLV + ADV + S R + + K G+ N+IL+G + K + Sbjct: 52 LRINAGSVEIFAVPEPMSDVLVGESRIADVAIISDRRIAVTAKAPGRTNIILMGENRKLL 111 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146 LD+L+ + +R+ + I + V+ Sbjct: 112 SKLDVLVFKAEDENGNPIRKQ-SGKQINTYYENGQVI 147 >gi|241258202|ref|YP_002978468.1| type IV secretion pathway protein [Ralstonia pickettii 12D] gi|309783222|ref|ZP_07677935.1| R64 PilN family type IVB pilus formation outer membrane protein [Ralstonia sp. 5_7_47FAA] gi|240869002|gb|ACS66659.1| type IV secretion pathway protein [Ralstonia pickettii 12D] gi|308917966|gb|EFP63650.1| R64 PilN family type IVB pilus formation outer membrane protein [Ralstonia sp. 5_7_47FAA] Length = 561 Score = 67.8 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 91/257 (35%), Gaps = 32/257 (12%) Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDF 245 L+ Q+ + V I EVR G S+ S +F S Sbjct: 312 LDAMFGKQIGIDVKIYEVRLSQEDNYGLNLSLAYKSGNGHTGATFTGAGVPSVTSTASPM 371 Query: 246 SVKGVLDRFSFE---TVLHALERATAI-RTLAEPTLT----AISGQSAS---FTSGGQHL 294 + + + L AL + R L +T ++ Q A+ F G Q Sbjct: 372 TFGATIVGGKLDGTKAALQALSTLGNVSRVLQRGGVTQNGKVLALQDATLQDFVQGTQTT 431 Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYR 352 + ST A +T+ G +F P V+ GRI + +S +P+ +G S Sbjct: 432 LASNVGSTTAIQTSTNISGFTGNFRPKVI-NGRIMMVFDMTISELQPLQTFTSGSSASQS 490 Query: 353 VRKADT--------TVELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSR 402 + T +V L G T+VL G+ + GI P +P+LG Sbjct: 491 TVQLRTMPLARFEQSVGLRPGETLVLTGMREQSTSTTNNGIGSPY---MPLLG---GGVD 544 Query: 403 FNREETEIFIAATPFLV 419 +++T I + T L+ Sbjct: 545 AQKKDTMIAVVITARLL 561 >gi|310765449|gb|ADP10399.1| Type IVB pilus formation outer membrane protein [Erwinia sp. Ejp617] Length = 548 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 87/254 (34%), Gaps = 28/254 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVS 240 + +N NI QV L V + V + ++G ++ S G S + A + + Sbjct: 300 RSFVNERNIELNRQVMLNVQVYSVEKQQSDRLGIDWKAVFKDSLGLSFTNAYTEASEAMM 359 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 GG + G S + AL + + L + + + + Q Y + +S Sbjct: 360 SGGVSIIDGKGKGSS--AFIKALAQQANVSMLTQASSMTTNLSAVPIQVALQQDYASNAS 417 Query: 301 STGATSV--------TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNA 345 + +V +T G + P ++ I + + + + + Sbjct: 418 TENTANVGSSSSISKSTITTGFNMTVLPYLIPHTSRMQLQFAINMSDEPTIRKFTSENTS 477 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF---RNSR 402 ++ R++ + V + SG T+VL+G +G+ F + Sbjct: 478 VELMKTRLKTFNQRVIMSSGQTLVLSGYQSMSNTANHQGV-------GSSHFFALGGGAE 530 Query: 403 FNREETEIFIAATP 416 + + + I TP Sbjct: 531 GDVNRSTLVILITP 544 >gi|259909855|ref|YP_002650211.1| Type IVB pilus formation outer membrane protein [Erwinia pyrifoliae Ep1/96] gi|224965477|emb|CAX57009.1| Type IVB pilus formation outer membrane protein [Erwinia pyrifoliae Ep1/96] gi|283479947|emb|CAY75863.1| Outer membrane lipoprotein bfpB; Bundle-forming pilus B; Flags: Precursor [Erwinia pyrifoliae DSM 12163] Length = 548 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 87/254 (34%), Gaps = 28/254 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVS 240 + +N NI QV L V + V + ++G ++ S G S + A + + Sbjct: 300 RSFVNERNIELNRQVMLNVQVYSVEKQQSDRLGIDWKAVFKDSLGLSFTNAYTEASEAMM 359 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 GG + G S + AL + + L + + + + Q Y + +S Sbjct: 360 SGGVSIIDGKGKGSS--AFIKALAQQANVSMLTQASSMTTNLSAVPIQVALQQDYASNAS 417 Query: 301 STGATSV--------TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNA 345 + +V +T G + P ++ I + + + + + Sbjct: 418 TENTANVGSSSSISKSTITTGFNMTVLPYLIPHTSRMQLQFAINMSDEPTIRKFTSENTS 477 Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF---RNSR 402 ++ R++ + V + SG T+VL+G +G+ F + Sbjct: 478 VELMKTRLKTFNQRVIMSSGQTLVLSGYQSMSNTANHQGV-------GSSHFFALGGGAE 530 Query: 403 FNREETEIFIAATP 416 + + + I TP Sbjct: 531 GDVNRSTLVILITP 544 >gi|227818617|ref|YP_002822588.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii NGR234] gi|36958873|gb|AAQ87298.1| CpaC [Sinorhizobium fredii NGR234] gi|227337616|gb|ACP21835.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii NGR234] Length = 172 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 4/114 (3%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK----ISIGLNKVIILQVPVDVQDV 69 I P++ A AA + ++ + + ++ L + + Sbjct: 13 IGAGWLVPALLACTLFGAAQAAEDRPPTTALEPTRQTEGVVRVIVDFARPLILARPASTL 72 Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 ++ +PT A + +T+ L GK G N+I++ G ++ N+ + + L Sbjct: 73 IIGNPTIAQATLSDDKTVILTGKTPGSTNLIVMDAAGAEVANIILDVAAAGGRL 126 >gi|163785750|ref|ZP_02180256.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1] gi|159878981|gb|EDP72979.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1] Length = 363 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 69/215 (32%), Gaps = 28/215 (13%) Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 + +R ++NI +S R ++ + + T N+ + K Sbjct: 158 QQAPKRISPNANINTVNIS---------RNRKEKPKIIAEKTTNTLVIYANRLEYEAIKN 208 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 ++ L+ + QV + I EV + LK+IG + I GS G + G + G Sbjct: 209 LVENLD-KQKKQVLITALITEVSQKALKEIGVRWQILGSYGGAAFKGGLSTEGFYNLLGS 267 Query: 244 DFSVKGVLDRFSFETVLH--------------ALERATAIRTLAEPTLTAISGQSASFTS 289 GVL + L+R T ++ P + + A+ Sbjct: 268 TNFAAGVLSSSGRNVSISGNTLFFPDLLFLLSLLDRGTGFNIISSPKILTMDNTEATINV 327 Query: 290 GGQHLYKTV----SSSTGATSVTTHDYGVVLHFTP 320 + + + + + G+ L P Sbjct: 328 SQVTPFASSLKFDVNGNPIINYDYKEVGLKLKVLP 362 >gi|150398537|ref|YP_001329004.1| hypothetical protein Smed_3348 [Sinorhizobium medicae WSM419] gi|150030052|gb|ABR62169.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 140 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 1/103 (0%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 S+ VA L + A + + + + + ++ +L++ V V++ + Sbjct: 4 LSATKRVAMLAFLTTALS-GGHAPSGARAAEEMMRVYMDHARVLKLDRPVSKVIIGNSDV 62 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119 AD V +T+ L G+N G N++++ DG M++ IL+ D Sbjct: 63 ADATVADAKTIVLTGRNFGTTNLVILDQDGNAMVDERILVSID 105 >gi|331650722|ref|ZP_08351760.1| bacterial type II and III secretion system domain protein [Escherichia coli M605] gi|331040432|gb|EGI12624.1| bacterial type II and III secretion system domain protein [Escherichia coli M605] Length = 127 Score = 67.0 bits (162), Expect = 7e-09, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 9/116 (7%) Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADT 358 ++ SVT + G + P + I L I+ ++S V D P+ R T Sbjct: 14 NNRPVQSVTYRNSGAIFTVKPFIYDD-VINLDIEQQLSNFVKTTTGVNDSPTLIKRDIRT 72 Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 V + G IVL GL + LL P+ F + ++T+I + Sbjct: 73 QVSVRDGEIIVLGGLASSKTTETNTAFSLL---PV----FSGHASDSDKTDIIVVL 121 >gi|15963890|ref|NP_384243.1| hypothetical protein SMc04115 [Sinorhizobium meliloti 1021] gi|307315787|ref|ZP_07595301.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] gi|307320422|ref|ZP_07599839.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|15073065|emb|CAC41524.1| Hypothetical protein SMc04115 [Sinorhizobium meliloti 1021] gi|306893988|gb|EFN24757.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306898555|gb|EFN29228.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] Length = 138 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 39/77 (50%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + + + ++ +L++ V V++ + AD V +T+ L G+N G N++++ Sbjct: 27 ARAAEEMMRVYMDHARVLKLDRPVSKVIIGNAEVADATVADAKTIVLTGRNFGTTNLVIL 86 Query: 103 GHDGKQMLNLDILIERD 119 DG M++ IL+ D Sbjct: 87 DQDGNAMVDERILVSID 103 >gi|269105263|ref|ZP_06157955.1| hypothetical protein VDA_000083 [Photobacterium damselae subsp. damselae CIP 102761] gi|268160527|gb|EEZ39028.1| hypothetical protein VDA_000083 [Photobacterium damselae subsp. damselae CIP 102761] Length = 486 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 83/253 (32%), Gaps = 28/253 (11%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVS 240 ++V++ QV L++T+ E R ++ K G + + G K Sbjct: 242 RQVVDKFQQELAKQVLLEITVLEFRSNLGKDQGIDWQLLKNVGDGTIKFLIPGTTATATG 301 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + G + ALE + T ++ ISG A + Y + S Sbjct: 302 NPAGLAFTGTGKWDGTTAFIKALEEQGTVSTQTPISMLTISGYPARISQTITTPYLSDVS 361 Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMP 349 + + T+ GV + V G + LR+ ++++ +N + Sbjct: 362 TEVTETTTSTSTTRDKVVEGVDMMVNAKVQK-GVVSLRVTGKLTKIAGDTTEKINDATLR 420 Query: 350 SYRVRKADTTV--ELPSGGTIVLAGLLKDDIQQLKE---GIPLLSKIPILGALFRNSRFN 404 + R AD + +L G T+V+ + + K GI L Sbjct: 421 FIKTRDADLSFVNKLRYGQTVVIGSIKQQSTGANKSSSFGIDGLG----------MQSTT 470 Query: 405 REETEIFIAATPF 417 E E + TP Sbjct: 471 NETVETLVLLTPR 483 >gi|329917057|ref|ZP_08276428.1| type II and III secretion system protein [Oxalobacteraceae bacterium IMCC9480] gi|327544637|gb|EGF30102.1| type II and III secretion system protein [Oxalobacteraceae bacterium IMCC9480] Length = 537 Score = 66.6 bits (161), Expect = 9e-09, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 84/264 (31%), Gaps = 53/264 (20%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-------------- 241 + V I +V G Q + + P AA+ + Sbjct: 228 IIYDVNIFQVDLKDNSDTGIQWNKLAWAGTPG--LAANPASTATTAVTPAVAGTTAATTA 285 Query: 242 -------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288 G + RFS + +++ L+ ++ ++ P L ISG S Sbjct: 286 ATNIGNAVSGGIAGLGLGLVLSSSRFSVDMLINFLQTQGNVKAISRPRLAVISGTKGSLR 345 Query: 289 SGGQHLYKTVSSSTGATSV-----TTHD--YGVVLHFTPTVLSP---GRIGLRIQTEVSE 338 G Y + + +TSV T D G+ L RIGL I VS Sbjct: 346 VGQSTTYVSKVGTNFSTSVNQVTTETRDLKTGLDLALFGDFSDNTVYTRIGLSISEIVSL 405 Query: 339 PVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGL-LKDDIQQLKEGIPLLSKIPILG 395 D +P+ R+ +T + G I+L G+ + D ++ G+ Sbjct: 406 NKFTALGTDLTLPTTADREINTVIRARPGDMILLGGITINRDASDIRRGV---------- 455 Query: 396 ALFRNSRFNREETEIFIAATPFLV 419 S +E+ +A +V Sbjct: 456 -TQNGSSDTVTRSELVLALKSKVV 478 >gi|134287991|ref|YP_001110155.1| type IVB pilus formation outer membrane protein [Burkholderia vietnamiensis G4] gi|134132641|gb|ABO60267.1| type IVB pilus formation outer membrane protein, R64 PilN family [Burkholderia vietnamiensis G4] Length = 563 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 80/260 (30%), Gaps = 34/260 (13%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGG 236 KK ++ N V V + V G + +TG A Sbjct: 309 KKYIDYQNKRLSKFVQFNVKVYSVTLSNNDSAGVNWNALYQTVTGKYGIKLSGAAFSAPA 368 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296 VS G E V+ AL L ++ Q+ + G Q Y Sbjct: 369 AAVSAGFSVLKSSGSPWSGTEAVVSALNEQGKANLERSQALPTLNFQAVATQVGTQTGYV 428 Query: 297 TVSSST------GATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIG 342 + +T +TS+ T + G L P V I ++ +S IG Sbjct: 429 AGTQTTQTAQVGSSTSIQMGTINVGFNLSLFPYVQDNNDILVQFNLNLSNLDSIRKVNIG 488 Query: 343 VNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-----A 396 ++ + P+ + V + G T++L G+ ++D + G G A Sbjct: 489 DSSAEAPNINLPLNTVQKVRIRPGDTLMLTGINQNDDSSNRTGT---------GMHWNWA 539 Query: 397 LFRNSRFNREETEIFIAATP 416 L T + + TP Sbjct: 540 LGGGVNAQSNRTMLVVLITP 559 >gi|213649903|ref|ZP_03379956.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 109 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%) Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 T +P G ++++ G +D + IP+L K+P++G+LFR S N+ Sbjct: 2 ISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSN-----VVR 56 Query: 416 PFLVKPVAMRDLSRPDDHYSVED 438 F+++P + D PD SV + Sbjct: 57 VFMIEPKEIVDPLTPDASESVNN 79 >gi|153842373|ref|ZP_01993497.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) [Vibrio parahaemolyticus AQ3810] gi|149745386|gb|EDM56637.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) [Vibrio parahaemolyticus AQ3810] Length = 356 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 36/161 (22%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------ 229 ++++ L+I QV ++ I + + ++G + T + + Sbjct: 104 REIIESLDIP-VKQVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGL 162 Query: 230 ---------------------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERAT 267 + + F V + + L AL++ + Sbjct: 163 YEGGGDGEGEEGGDGVGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQES 222 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 ++ P L + + A G + Y SSS+GAT++ Sbjct: 223 KAEIISSPRLITTNKKPAYIEQGTEIPYLE-SSSSGATALQ 262 >gi|187928617|ref|YP_001899104.1| PilN [Ralstonia pickettii 12J] gi|241114194|ref|YP_002973669.1| type IV secretion pathway protein [Ralstonia pickettii 12D] gi|187725507|gb|ACD26672.1| PilN [Ralstonia pickettii 12J] gi|240868767|gb|ACS66425.1| type IV secretion pathway protein [Ralstonia pickettii 12D] Length = 563 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 90/260 (34%), Gaps = 32/260 (12%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEG 242 + L+ QV + V I EVR + G S+ S +F S Sbjct: 311 VRTLDAMFGKQVAIDVRIYEVRLNQEDNYGLNLSLGYKSGNGHTGATFTGVAPPTVSSNA 370 Query: 243 GDFSVKGVLDRFSFETV---LHALERATAI-RTLAEPTLT----AISGQSASFTSGGQHL 294 SV + + + AL + + ++ +T ++ QSA+ Sbjct: 371 TPMSVGATIVGGKLDGTKVAVQALSTLGNVTQVVSRSGVTQNGKVMAMQSATLQDYIPSS 430 Query: 295 YKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMP 349 T++S+ G+TS G FTP V+ GRI + +S P+ G Sbjct: 431 QTTLASNVGSTSSMQTAPDISGFTSTFTPKVV-NGRILIMFDMTLSNLNPLQEQTQGSGA 489 Query: 350 SYRVRKADT--------TVELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFR 399 S + T TV L G ++VL GL G+ P +P+ G Sbjct: 490 SLSKVQLRTKPLARFQQTVGLKPGESLVLTGLRDQTTSTTNNGVGSPY---VPVTG---G 543 Query: 400 NSRFNREETEIFIAATPFLV 419 + ET I + T L+ Sbjct: 544 GVDAAKRETMIAVVITARLL 563 >gi|329891000|ref|ZP_08269343.1| pilQ [Brevundimonas diminuta ATCC 11568] gi|328846301|gb|EGF95865.1| pilQ [Brevundimonas diminuta ATCC 11568] Length = 129 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 44/86 (51%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 AA++ ++ + + + + + L++ +Q+ V+V++P ADV V RT+++ GK+ Sbjct: 11 AALLVLTAPAVAQERPLDVKLDQATRVQLRAPAGSVIVANPRIADVTVTDARTLFITGKS 70 Query: 94 VGQANVILIGHDGKQMLNLDILIERD 119 G +I + G+ + + + Sbjct: 71 YGLTEIIAVDALGRPLFQRQVAVSPG 96 >gi|290243131|ref|YP_003494801.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] gi|288945636|gb|ADC73334.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] Length = 611 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 64/357 (17%), Positives = 120/357 (33%), Gaps = 50/357 (14%) Query: 137 RVEMVSDTVV---LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 ++E + + V L V T + + A E E ++ ++ RN Sbjct: 181 QIEDLGGSAVRGELDAGVITYRAAPNAHEDIEQYVERAARNAAV---------------- 224 Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 V L++ + +VR + ++ GF + + + G + + Sbjct: 225 --VHLQLALLDVRLNREERKGFNWNELAVRMGSLVNTDVEQLGEMLTFTRQGVGAEVQRN 282 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTG---A 304 S VL+AL T + TLT ++G SGG+ + TVS + Sbjct: 283 DVSVTAVLNALSEYGDATTEQDITLTTVAGSEVDMRSGGEIPFVGDLDTTVSGESNIRSG 342 Query: 305 TSVTTHDYGVVLHFTPT-------VLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRK 355 SV T G+ + TP V S + L ++ E +G+ G + P + Sbjct: 343 ASVDTQSVGIEVAITPRYDASTDLVTSSIDMDLTDVVQIREFDVGLEGGTLSHPELQDLS 402 Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 L G ++ G+ D + Q + L A + R + + +FI Sbjct: 403 FTNISRLRPGEATLIGGIAYDQVDQDFTSLAGLED-----AKAGSQRISTDRHAMFILLR 457 Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI------YGPKEASEVEGQNYK 466 P + D P + D ++ Y + ++EGQ+ + Sbjct: 458 PTVTVFTDEGDDLLPLPGTARACDTSVVSIGEDEELVETTAAYFRSGSDQLEGQSAR 514 >gi|89885889|ref|YP_516087.1| Type II secretory pathway component PulD-like [Rhodoferax ferrireducens T118] gi|89347887|gb|ABD72089.1| Type II secretory pathway component PulD-like [Rhodoferax ferrireducens T118] Length = 475 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 68/428 (15%), Positives = 134/428 (31%), Gaps = 59/428 (13%) Query: 34 AAVINISDVEIGKGKKISIGLNKVII---LQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90 A IS V+ + +IG ++ I LQ + + + + T V+ L Sbjct: 41 APAPEISVVDRSPDRTRNIGKEELFIAQPLQSSDPMPRINIENVTILSSRVYELMRTLLD 100 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--- 147 GKN+ + + G + K M + LE L F T+ + Sbjct: 101 GKNI---SFSISGVNSKVMRR-HVSASNITGDLEQILDDFANSVGFYWHYKGGTLHIAPD 156 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGR---------NQYANSSSKKVMNLLN------IAG 192 + TI E L G + S++++ ++ Sbjct: 157 RQYIATIPPIDDVYESMPPMLQSMGAIDVFVDRTSHLVTYSANREASEKIDGYLKHIRDN 216 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + ++ V + +V D + G + + G FS Sbjct: 217 KKMISYDVYVWQVELDGDHKNGIRWEKLDEEIASKRGVKRQAASSDAKLGAGFSSTFGRG 276 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-----KTVSSSTGATSV 307 + + L I +++P + ISG ++F G +Y SS T+V Sbjct: 277 ELPIDVLSSFLSAQGKIHAISQPKMAMISGGKSTFRIGNTTVYAKQVGTDSSSGVNKTTV 336 Query: 308 TTHDY--GVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTV 360 TT G+ L + I +++ + N + P R+ T Sbjct: 337 TTAQALSGIELTVVGNLDGETVYTDIQMKLNDLLRFNSFSANGISLQLPQNANRELSTLA 396 Query: 361 ELPSGGTIVLAGL----------LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 + G +++LAG+ +KD ++ +P + + TE+ Sbjct: 397 RIRPGNSLLLAGINISRTDDSRTVKDAREKNSMTLP------------NSMYETEQRTEL 444 Query: 411 FIAATPFL 418 + +P + Sbjct: 445 VLVFSPNV 452 >gi|302381761|ref|YP_003817584.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides ATCC 15264] gi|302192389|gb|ADK99960.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides ATCC 15264] Length = 139 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 41/89 (46%) Query: 34 AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93 A V + + + + +++G+++ + + V+V +P ADV V T+++ GK Sbjct: 17 AGVTCLFAAGMAQAQSLNVGIDRSARVALRGSAASVIVGNPAIADVTVVDANTLFVTGKG 76 Query: 94 VGQANVILIGHDGKQMLNLDILIERDIAH 122 G VI + G+ + ++++ Sbjct: 77 YGVTEVIAVDGLGRTIYQGEVIVSGGSTG 105 >gi|99035082|ref|ZP_01314871.1| hypothetical protein Wendoof_01000288 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 413 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 19/178 (10%) Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 + ++ +N + QV ++ I EV D + ++ G D Sbjct: 236 AVEEYINKVKKLASSQVMIEAKIVEVVLDD--KYLSGMNLNDLQDGTKSIINQD------ 287 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298 ++ ++ L++ ++ P + AI+ Q A + H+Y T Sbjct: 288 --NSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSD 345 Query: 299 -------SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDM 348 S+ T T + + GVVL P++ I + I +S D+ Sbjct: 346 IQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDI 403 >gi|238898455|ref|YP_002924136.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466214|gb|ACQ67988.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 546 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 98/256 (38%), Gaps = 19/256 (7%) Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 L G V+++ R + ++ ++ N QV L + + V Sbjct: 259 LQGAVKSMLTPGRGRLFLSAGNLTVTDVPRVLDTVERFVDERNQTLNRQVVLNIEVLSVE 318 Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGG--KFVSEGGDFSVKGVLDRFSFETVLHALE 264 Q+G + ++S S + FGG + +GG V G L + L AL Sbjct: 319 ARQKDQLGLDWNAVFNNSRWGLSLSQAFGGVSGNIMQGGFSVVDGRLAGS--KVFLKALA 376 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVT--THDYGVVL 316 + + + + T + + Q Y ++ ATS+ T G + Sbjct: 377 EQAKVSVVTQQSSTTTNLSPVAMQVAEQEDYVAQVTTQATANVGTATSIQPATITTGFYI 436 Query: 317 HFTPTVLSPG-RIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 + P +L G + L+ +S+P G ++ ++ + +++ V++ +G T+V Sbjct: 437 NLLPNILPDGQHLLLQFAINLSDPPTRRTFTSGESSVELLNTQLKTFTQRVKMKTGQTLV 496 Query: 370 LAGLLKDDIQQLKEGI 385 L+G + + K+G+ Sbjct: 497 LSGFQQASRKGSKQGV 512 >gi|330984052|gb|EGH82155.1| hypothetical protein PLA107_03384 [Pseudomonas syringae pv. lachrymans str. M301315] Length = 512 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 30/206 (14%) Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 S+G + ++ FSF + + L +T ++ ISG+ + SG + Y Sbjct: 303 AGLSSKGLELNIAA--GDFSFLSAFNLLSTYGETKTTQSVSMDTISGEEVAIKSGQKIPY 360 Query: 296 K--------------TVSSSTGATSVTTHDYGVVLHFTPTV-LSPGRIGLRIQTEVS--- 337 S+S G+T V D G+ L P + + + ++S Sbjct: 361 IDSIGVNSNNNNGYNNSSNSLGSTDVKDVDIGLELKLKPYYDNRSKLVSIGVDLKLSSLL 420 Query: 338 -----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 + P + + V++ +G ++++ GL+ D + + + +L Sbjct: 421 RFVELSAGNQIGTLTRPQTQEQSFTDNVKVRAGESMIIGGLMYDQLSDNRSNLAMLDD-- 478 Query: 393 ILGALFRNSRFNREETEIFIAATPFL 418 + T +FI P + Sbjct: 479 ---YKTASKSAKVTRTAMFILIRPTV 501 >gi|332161774|ref|YP_004298351.1| Bacterial type II and III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|332161787|ref|YP_004298364.1| Bacterial type II and III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666004|gb|ADZ42648.1| Bacterial type II and III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666017|gb|ADZ42661.1| Bacterial type II and III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 298 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 4/119 (3%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 +N +++A DQV ++ + E + F + G + GG Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 F G+ D L A++ + + ++ P + SGQ+ + G + T + Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGN 296 >gi|90419761|ref|ZP_01227670.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans SI85-9A1] gi|90335802|gb|EAS49550.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans SI85-9A1] Length = 157 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 38/78 (48%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99 + + + + ++ I+Q+ V+V +P DV V S + L G++ G N+ Sbjct: 23 NAAAVDSRDVLPVEVDHARIVQIDNPAATVIVGNPAIVDVEVLSSNRLVLTGRSYGITNL 82 Query: 100 ILIGHDGKQMLNLDILIE 117 +++ +G +++ + ++ Sbjct: 83 VILDANGDIVMDQQVAVQ 100 >gi|86748911|ref|YP_485407.1| hypothetical protein RPB_1788 [Rhodopseudomonas palustris HaA2] gi|86571939|gb|ABD06496.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 164 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 41/80 (51%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 ++S G IS+ +++ ++++P ++ ++V +P ADV + + + GK G Sbjct: 24 SLSVASAGTEDTISVSVDQAKLIRLPQNISTLVVGNPLIADVAMQPGGMVVVTGKGYGAT 83 Query: 98 NVILIGHDGKQMLNLDILIE 117 NVI + G + + I +E Sbjct: 84 NVIAMDRKGAVIADRLIQVE 103 >gi|160903268|ref|YP_001568849.1| NolW domain-containing protein [Petrotoga mobilis SJ95] gi|160360912|gb|ABX32526.1| NolW domain protein [Petrotoga mobilis SJ95] Length = 388 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 84/235 (35%), Gaps = 18/235 (7%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFVSEG 242 + +L++ + + +++T+ V + + ++ + G SF F S Sbjct: 162 IKDLVDKLDKREPYIELTVYIVETNERYSDLIKGNVFNINQKGIINSF------SFTSPA 215 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 FSV+ + FE + E+ + + + + G+ A + + Sbjct: 216 IGFSVQDL-----FEAEIEMYEKNETANLVTKQVVNVLPGEPALLSLKNLESIVFTTYRN 270 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 ++ + G+ + TPT++ L+I + D + +T V L Sbjct: 271 EFRNIES---GIEIEMTPTMM---NQILQISFRTKTTNLMEVTNDSYLLSESELETKVNL 324 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417 +++A L + G LL +P L LF +++ E + I T Sbjct: 325 NPNEILLIADLDLSQLYSKNGGTTLLKDLPFLRFLFGDNQNIDESKRMMIFLTAT 379 >gi|114705461|ref|ZP_01438369.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506] gi|114540246|gb|EAU43366.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506] Length = 156 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 40/82 (48%) Query: 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95 V + V K I+I ++ ILQ+ V++ +P D+ V S + L GK+ G Sbjct: 18 VGSTPAVAEAKKDMIAIAVDHARILQIDRGAGTVIIGNPAIVDIEVLSEERLVLTGKSYG 77 Query: 96 QANVILIGHDGKQMLNLDILIE 117 NVI++ D +++ + ++ Sbjct: 78 ITNVIILDRDNSVLMDEQVAVQ 99 >gi|218530650|ref|YP_002421466.1| hypothetical protein Mchl_2699 [Methylobacterium chloromethanicum CM4] gi|218522953|gb|ACK83538.1| conserved hypothetical protein [Methylobacterium chloromethanicum CM4] Length = 159 Score = 65.1 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 6/109 (5%) Query: 21 PSVAKLPPIKEANAAVINISDV------EIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 P + A+AA++ + V E +S+ ++ ++++P Q V+V +P Sbjct: 2 PRLRSALLPATASAAIMMVVFVGQAHANEPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNP 61 Query: 75 TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 AD+ + + L GK+ G N+I + G + I ++ A + Sbjct: 62 MIADITLQKNGVVVLTGKSFGTTNLIALDGKGAMLAESTISVQAPQASI 110 >gi|86355860|ref|YP_467752.1| hypothetical protein RHE_CH00201 [Rhizobium etli CFN 42] gi|86279962|gb|ABC89025.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 102 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 36/66 (54%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113 ++ +L++ V V+V + AD V +T+ L G++ G N++L+ DG +L+ Sbjct: 1 MDHARVLKLDRPVSKVIVGNAQVADATVADAKTIVLTGRSFGTTNLVLLDADGNAILDER 60 Query: 114 ILIERD 119 IL+ D Sbjct: 61 ILVSID 66 >gi|188581656|ref|YP_001925101.1| hypothetical protein Mpop_2404 [Methylobacterium populi BJ001] gi|179345154|gb|ACB80566.1| conserved hypothetical protein [Methylobacterium populi BJ001] Length = 160 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 38/81 (46%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 + +S+ ++ ++++P Q V+V +P AD+ + + L GK+ G N+I + Sbjct: 31 DPAPQGAVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNLIAL 90 Query: 103 GHDGKQMLNLDILIERDIAHL 123 G + I ++ A + Sbjct: 91 DGRGAMLAESTISVQAAQASI 111 >gi|45751681|emb|CAF21324.1| InvG protein [Burkholderia pseudomallei] Length = 214 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 77/219 (35%), Gaps = 22/219 (10%) Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G+ D RAV +T + ++ L++ + Q+ L + I ++R+ Sbjct: 10 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 68 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 L Q+G ++ G G F + GG+ + LD F + AL + Sbjct: 69 RLDQLGIDWQGALNAPG--------IGVGFNNRGGNVT---TLDGTRFLASVAALSQTGD 117 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327 ++ P + A+F S K + T + YG +++ P + G + Sbjct: 118 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 175 Query: 328 IGLRIQTEVSEPVIGVNAGDM-------PSYRVRKADTT 359 + + + E + G + P + +T Sbjct: 176 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTV 214 >gi|149177451|ref|ZP_01856055.1| hypothetical protein PM8797T_19156 [Planctomyces maris DSM 8797] gi|148843784|gb|EDL58143.1| hypothetical protein PM8797T_19156 [Planctomyces maris DSM 8797] Length = 1668 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 34/57 (59%) Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 P GGT++L G+ + + G+P+L+K+P + LF+N+ RE + + TP ++ Sbjct: 1600 PDGGTVLLGGVKRLREGRSMAGVPILNKLPYVSRLFKNTGVGRETESLMMMVTPRII 1656 Score = 40.8 bits (94), Expect = 0.52, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 8/113 (7%) Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G F + G +L ++A + + P +T +GQ A TS + Sbjct: 1387 GSFNANAGVNVGLAILSDIEAFFFINAAQADERSNLMFAPKVTLFNGQVAFVTSNVSRPF 1446 Query: 296 KTV-SSSTGATSVTTHDY------GVVLHFTPTVLSPGR-IGLRIQTEVSEPV 340 + G +V GV L + + + R + L + + Sbjct: 1447 VISLVPTVGNFAVGFTPVIANIPEGVSLTVSAVISADRRYVRLSVNPNFTNVT 1499 >gi|307943136|ref|ZP_07658481.1| PilQ [Roseibium sp. TrichSKD4] gi|307773932|gb|EFO33148.1| PilQ [Roseibium sp. TrichSKD4] Length = 161 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 42/81 (51%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + I + +++ +++ + ++ V+V +P ADV +H T+ + GK+ G N Sbjct: 20 VGSSAIAQEGPVTVMVDRAKVFRIQEPASTVIVGNPFIADVAMHDASTVVITGKSYGSTN 79 Query: 99 VILIGHDGKQMLNLDILIERD 119 ++++ + + +++ I ++ Sbjct: 80 LVILDDNNEPIIDEVITVKAS 100 >gi|254561617|ref|YP_003068712.1| hypothetical protein METDI3204 [Methylobacterium extorquens DM4] gi|254268895|emb|CAX24856.1| conserved hypothetical protein; putative exported protein precursor [Methylobacterium extorquens DM4] Length = 160 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E +S+ ++ ++++P Q V+V +P AD+ + + L GK+ G N+I + Sbjct: 31 EPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNLIAL 90 Query: 103 GHDGKQMLNLDILIERDIAHL 123 G + I ++ A + Sbjct: 91 DGKGAMLAESTISVQAPQASI 111 >gi|316933043|ref|YP_004108025.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1] gi|315600757|gb|ADU43292.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1] Length = 162 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 38/75 (50%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 G IS+ +++ ++++P D+ ++V +P ADV + + + GK G NVI + Sbjct: 28 TAGTEDSISVNVDQAKLIRLPQDIATIVVGNPLIADVTLQPGGMVVVTGKGYGATNVIAM 87 Query: 103 GHDGKQMLNLDILIE 117 G + + I +E Sbjct: 88 DRKGAIVADRLIQVE 102 >gi|163851899|ref|YP_001639942.1| hypothetical protein Mext_2476 [Methylobacterium extorquens PA1] gi|240139022|ref|YP_002963497.1| hypothetical protein MexAM1_META1p2441 [Methylobacterium extorquens AM1] gi|163663504|gb|ABY30871.1| conserved hypothetical protein [Methylobacterium extorquens PA1] gi|240008994|gb|ACS40220.1| conserved hypothetical protein; putative exported protein precursor [Methylobacterium extorquens AM1] Length = 160 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 E +S+ ++ ++++P Q V+V +P AD+ + + L GK+ G N+I + Sbjct: 31 EPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNLIAL 90 Query: 103 GHDGKQMLNLDILIERDIAHL 123 G + I ++ A + Sbjct: 91 DGKGAMLAESTISVQAPQASI 111 >gi|110632963|ref|YP_673171.1| hypothetical protein Meso_0606 [Mesorhizobium sp. BNC1] gi|110283947|gb|ABG62006.1| conserved hypothetical protein [Chelativorans sp. BNC1] Length = 167 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 43/107 (40%) Query: 17 FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76 + + P + + V + + + ++ +L + ++V + Sbjct: 9 LALAVLLVTPPAEAGGDPLLAVEQTVAYERAGAVRLTIDFAELLVLDEPASTIIVGNSAI 68 Query: 77 ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 A + RT+ L G+ G N+I++ +G+++ NL + + HL Sbjct: 69 AAASLTDDRTLILTGRTAGATNLIVLDAEGEEIANLVLEVVAAGNHL 115 >gi|148258230|ref|YP_001242815.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1] gi|146410403|gb|ABQ38909.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1] Length = 145 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 39/74 (52%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I++ +++ ++++P V ++V +P ADV + S + + GK+ G N I + G+ + Sbjct: 16 IAVNVDQAKLVKLPDRVATLVVGNPMIADVTLQSGGIIVVTGKSYGATNFIAMDRGGQVL 75 Query: 110 LNLDILIERDIAHL 123 ++ I + L Sbjct: 76 VDRQIQVAGPTDRL 89 >gi|118589699|ref|ZP_01547104.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614] gi|118437785|gb|EAV44421.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614] Length = 154 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 44/89 (49%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94 AV + V + + + + +++ + ++ V+V +P ADV + T+ + GK+ Sbjct: 13 AVALSTTVAVAQDGPVLVTVDRAKVFRIEDGAAAVIVGNPFIADVAMFDQNTVVITGKSY 72 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHL 123 G N++++ D K +++ I ++ + Sbjct: 73 GTTNLVILDGDNKPIVDETITVKASDDDV 101 >gi|38638012|ref|NP_942986.1| putative component of type II secretion apparatus [Ralstonia eutropha H16] gi|32527350|gb|AAP86100.1| putative component of type II secretion apparatus [Ralstonia eutropha H16] Length = 552 Score = 64.3 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 92/261 (35%), Gaps = 28/261 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEV--RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239 ++ + L QV + V + EV R+ + + SS P SF++ Sbjct: 297 EQFVKSLVAMYGKQVAIDVQVYEVRVTREDNFGLNLSLAYQSSSGKPDVSFSSVSTPTIS 356 Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISG-----QSASFTSGG 291 ++ + F V+ AL + + + +G Q+A+ Sbjct: 357 GSATAMNLGATIMSGPFAGSKAVVQALSTLGNVSQVVSRSGVTQNGKVLALQTATLQDYV 416 Query: 292 QHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLR----------IQTEVSE 338 T++++ G+TS T YG +F P V+ GRI + +Q S Sbjct: 417 AQSQTTLAANVGSTSSIQTGTVTYGFTSNFLPKVV-DGRILMNFDMTLSDLLPLQRFNSG 475 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + + + + ++ L G ++VL GL G+ + P + AL Sbjct: 476 GDANQTSVQLRTMPTNRFTQSITLKPGESLVLTGLRNQKASTTNNGV---GE-PWMAALG 531 Query: 399 RNSRFNREETEIFIAATPFLV 419 + +T I I + L+ Sbjct: 532 GGVGALKGDTVIAIMISARLL 552 >gi|83312848|ref|YP_423112.1| hypothetical protein amb3749 [Magnetospirillum magneticum AMB-1] gi|82947689|dbj|BAE52553.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 150 Score = 64.3 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + + I L +L + + V+V +P ADV V PRT+ +FGK G + ++ G Sbjct: 25 TEALEIPLGGATLLPMRGVARSVVVGNPAIADVTVDGPRTITVFGKAPGGTTLAVLDAGG 84 >gi|146338128|ref|YP_001203176.1| hypothetical protein BRADO1025 [Bradyrhizobium sp. ORS278] gi|146190934|emb|CAL74939.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 145 Score = 63.9 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 39/74 (52%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I++ +++ ++++P V ++V +P ADV + S + + GK+ G N I + G+ + Sbjct: 16 IAVNVDQAKLVKLPDRVATLVVGNPMIADVTLQSGGIIVVTGKSYGATNFIAMDRGGQVL 75 Query: 110 LNLDILIERDIAHL 123 ++ I + L Sbjct: 76 IDRQIQVAGPTDRL 89 >gi|75674503|ref|YP_316924.1| hypothetical protein Nwi_0305 [Nitrobacter winogradskyi Nb-255] gi|74419373|gb|ABA03572.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 163 Score = 63.9 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 9/104 (8%) Query: 14 IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 + + + + A L A A VI + IS+ +++ ++++P + ++V + Sbjct: 12 VSVIGVSFAAAILLGAATAPAEVI---------SEPISVNVDQAKLVRLPGPIATIVVGN 62 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 P ADV + + + GK G N+I + G M++ I +E Sbjct: 63 PLIADVTLQPGGLVVVTGKGYGATNMIAMDRAGSIMVDRVIQVE 106 >gi|27376555|ref|NP_768084.1| hypothetical protein blr1444 [Bradyrhizobium japonicum USDA 110] gi|27349696|dbj|BAC46709.1| blr1444 [Bradyrhizobium japonicum USDA 110] Length = 165 Score = 63.9 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 39/82 (47%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + I++ +++ ++++P V ++V +P ADV + + + GK G N I Sbjct: 28 LAESTADTIAVNVDQAKLVRLPGKVATIVVGNPLIADVTLQPGGMIVVTGKGYGATNFIA 87 Query: 102 IGHDGKQMLNLDILIERDIAHL 123 + G+ +++ I +E L Sbjct: 88 LDRGGEILVDRQIQVEGPSDRL 109 >gi|85713500|ref|ZP_01044490.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A] gi|85699404|gb|EAQ37271.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A] Length = 163 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 48/99 (48%), Gaps = 1/99 (1%) Query: 20 NPSVAKLPPIKEANAAVIN-ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 PS A + + A ++ ++ + IS+ +++ ++++P + ++V +P AD Sbjct: 8 GPSRASVIGMSLAAVMLLGPVAAPAEVTSEPISVNVDQAKLVRLPGHIATIVVGNPLIAD 67 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 V + + + GK G NVI + G +++ I +E Sbjct: 68 VTLQPGGLVVVTGKGYGATNVIAMDRAGSILVDRVIQVE 106 >gi|281356727|ref|ZP_06243218.1| hypothetical protein Vvad_PD2101 [Victivallis vadensis ATCC BAA-548] gi|281316854|gb|EFB00877.1| hypothetical protein Vvad_PD2101 [Victivallis vadensis ATCC BAA-548] Length = 479 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 97/281 (34%), Gaps = 43/281 (15%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------------GKFVS 240 Q+ +++ I + + +++G + + + ++ FA F +S Sbjct: 193 PQLQVQLNIYVISDNNFRELGIDY-LAWKNGPGAEIFATGFDFSNFYSVEHLQDFTNILS 251 Query: 241 EGG---DFSVKGVLDRFSFETV-LHALERATAIRTLAEPTLTAISG---------QSASF 287 G + G+L +F+ L L + T A LT + + AS+ Sbjct: 252 SGPIWDATGLGGILVAPNFDATFLRMLAQKGKAWTAASAMLTLTNDFTTPAATSWEDASY 311 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDY--GVVLHF---TPTV---LSPGRIGLRIQTEVSEP 339 + + + T+ D G F +P + P + L + + Sbjct: 312 R--FKFTPQLQNIVKDENQTTSLDALDGSEFSFYLSSPVICFGDDPAKKALTLMCNWNLE 369 Query: 340 VIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396 V + + + + + L +G +LA K + + G+P L +IP+L Sbjct: 370 VNSLVETDNQGVATIDSNSFSSNLTLEAGTEKLLAVYDKHVVTEQYNGMPFLGEIPVLKY 429 Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437 LF + + + T V PV +++ P +E Sbjct: 430 LFGAESKVDSK--MRVFVTMSAV-PVETKNIPNPAAGKVIE 467 >gi|323137421|ref|ZP_08072499.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC 49242] gi|322397408|gb|EFX99931.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC 49242] Length = 180 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Query: 38 NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF-GKNVGQ 96 +++ K + I + L+ I+++P Q +++ +P ADV + + + GK+ G Sbjct: 45 SMATDASAKERPIRVELDYARIVRIPPGAQTLVIGNPLVADVTMLRNSQLMVITGKSFGT 104 Query: 97 ANVILIGHDGKQMLNLDILIERDIAHL 123 N+I++ G Q+ + + L Sbjct: 105 TNLIVLDRTGAQVGESIVTVAPAEDKL 131 >gi|218780600|ref|YP_002431918.1| hypothetical protein Dalk_2758 [Desulfatibacillum alkenivorans AK-01] gi|218761984|gb|ACL04450.1| hypothetical protein Dalk_2758 [Desulfatibacillum alkenivorans AK-01] Length = 351 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 30/169 (17%) Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314 E L+A E + P++ +S + G L V S + Sbjct: 203 DLEAALYAAENRNELMMARRPSVKTLSNEEVLIKHGWDILIDPVQEVGSLGSADYDSMDI 262 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL- 373 LH TP ++ I + + E + +NA D Y + +E+ G TI+++G+ Sbjct: 263 TLHATPRIIRNEHIFMNLSVET---IWYLNASDHGKYNN-SGEMGIEVNQGETIIISGIT 318 Query: 374 ----LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +K++ ++ + F +E E + TP + Sbjct: 319 LPSSIKEETERGE---------------F------EDEREFLVFITPTI 346 >gi|188591492|ref|YP_001796091.1| type IV secretion pathway, outer membrane lipoprotein, putative precursor (pilN homolog) [Cupriavidus taiwanensis] gi|170938887|emb|CAP63888.1| type IV secretion pathway, outer membrane lipoprotein, putative precursor (pilN homolog) [Cupriavidus taiwanensis LMG 19424] Length = 556 Score = 63.1 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 28/261 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--FAADFGGKFV 239 ++ + L QV + V + EVR G S+ SS F++ Sbjct: 301 EQFVKSLAAMYGKQVAIDVQVYEVRVTREDNYGLNLSLAYQSSAGQTGVAFSSVSTPTIS 360 Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISG-----QSASFTSGG 291 ++ + F V+ AL + + + +G Q+A+ Sbjct: 361 GSATPMNLGATIMSGPFAGSKAVVQALSTLGNVSQVVSRSGVTQNGKVLALQTATLQDYV 420 Query: 292 QHLYKTVSSSTGATS---VTTHDYGVVLHFTPTVLSPGRIGLR----------IQTEVSE 338 T++++ G+TS T YG +F P V+ GRI + +Q S Sbjct: 421 AQSQTTLAANVGSTSSIQTGTVTYGFTSNFLPKVV-DGRILMNFDMTLSDLLPLQRFNSG 479 Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398 + + + + ++ L G ++VL GL G+ + P + AL Sbjct: 480 GDANQTSVQLRTMPTNRFTQSITLKPGESLVLTGLRNQKASTTNNGV---GE-PWMAALG 535 Query: 399 RNSRFNREETEIFIAATPFLV 419 + +T I I + L+ Sbjct: 536 GGVGALKGDTVIAIMISARLL 556 >gi|59714055|ref|YP_206830.1| toxin coregulated pilus outer membrane protein TcpC [Vibrio fischeri ES114] gi|59482303|gb|AAW87942.1| toxin coregulated pilus outer membrane protein TcpC [Vibrio fischeri ES114] Length = 484 Score = 63.1 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 81/233 (34%), Gaps = 16/233 (6%) Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227 L + + S ++ + L + QV+++ I + + L Q+ + + + + Sbjct: 221 LVKITARPWIISEVDQLFDRLKAESQMQVSVQYRIISLSKSKLSQLAAKFGLDSKGNDFT 280 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ---- 283 + + GG S + V+ L + ++E + + Sbjct: 281 ITSELVDSVALNAAGGGLSFAKRSVSGRLDAVVKYLAQD----VVSEGHFVGLPNRIMPI 336 Query: 284 -----SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEV 336 S+ + + + V ST + + G+ + P VL GRI L + Sbjct: 337 NLTTTSSYISEVEKVDNENVDKSTTSLKTSEIKTGLSMLILPKVLEDGRIQLTSGFTKKQ 396 Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 + V+ +P+ + +TV L SG ++ L K + + LL Sbjct: 397 LIAMDTVSGVQLPTVDENETLSTVTLDSGDVELIT-LYKGNSNNSAQAAQLLG 448 >gi|330983953|gb|EGH82056.1| putative lipoprotein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 561 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 86/260 (33%), Gaps = 28/260 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + + N Q+ ++ + E+ D + Q S S G D S Sbjct: 307 RYIKTQNAIANKQIAIRADVYEINSDENGEFDPQLSALYSFGGFKLGMQDDT--FTFSPN 364 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 D + S L + ++ T+ A +G+ F + Y Sbjct: 365 RDSTTMNHKFSDSSSAAFKLLRTNKNVAQVSSSTIYAQNGEPTPFQQLDEIGYLAEVQIE 424 Query: 303 GATSVTTHDY---------------GVVLHFTPTVLSPGRIGLRIQTE----VSEPVIGV 343 ++S + G + P V S GR+ ++ + S G+ Sbjct: 425 TSSSSESSSSDASNLATLKPGKTSQGYSMTIIPRVTSDGRVMMKFAVDSSRLNSIDSYGL 484 Query: 344 NAG---DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400 + G +PS K + V + SG +++AG+ + P L + L L + Sbjct: 485 DGGAQIQVPSRSTNKNNQLVTVKSGEPLMIAGIERTANNATITS-P-LGRKSWL--LGGS 540 Query: 401 SRFNREETEIFIAATPFLVK 420 +++ I TP+++K Sbjct: 541 QSGGKKKIMTMIVLTPYIMK 560 >gi|281355620|ref|ZP_06242114.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281318500|gb|EFB02520.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 496 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 65/339 (19%), Positives = 105/339 (30%), Gaps = 73/339 (21%) Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE--------------DQVTLKV 200 + +Q V + L Y N+ + + ++A QV L++ Sbjct: 141 RAAQDIVNIINGALRTGIGAAYLNAETNTIYWKDDVASAKAILAWVQRLDRPVPQVNLRL 200 Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------------- 241 EVR L+ IG + + G + A GK S Sbjct: 201 NYYEVRESKLRDIGVDYLAWKNGPGLNLFAAGYDAGKVFSNEAVLQLLGGAKQFADLAKN 260 Query: 242 -GGDFSVKGVLDRFSFE-TVLHALERATAIRTLAEPTLT------------AISGQSASF 287 +S G F+ + + L+++ R ++ LT A Sbjct: 261 FSTSWSYGGFFTAPQFDLSFVRLLQQSGNARLVSNADLTFLNTPLYGDGRDVTRTYYAEL 320 Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT-PTV------------------------ 322 T Q+L K T + V L T P + Sbjct: 321 TPSYQNLKKDDDDRTDVVADQAETPAVALKITNPVICFGAQTGEVDSVGMVPATGDFYEN 380 Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 G + V+ V N GD S R D + L +L +K+ + Sbjct: 381 NRTGGVIFSYNLGVNSVVERNNRGDELSNYAR-IDGALTLGFKQEKLLGSYVKETDVEQT 439 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 GIP LS+IP+L LF + +E++ I + A LV P Sbjct: 440 IGIPFLSRIPVLKYLFGTTTTLKEKSYIIVTAEARLVHP 478 >gi|221067014|ref|ZP_03543119.1| conserved hypothetical protein [Comamonas testosteroni KF-1] gi|220712037|gb|EED67405.1| conserved hypothetical protein [Comamonas testosteroni KF-1] Length = 596 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 47/286 (16%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSS 223 + A ++V+ N + QV +++ I + + G + G++ Sbjct: 319 TTTKEAMQRIRQVVKSENESLTRQVRIQMDIYSITTKDGDEKGVNWGVVLNSLTSKWGAT 378 Query: 224 SGPSKSFAADFGGKF------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP-T 276 S D G+F ++ GG+ + V + + AL P Sbjct: 379 IDSPTSLVGDTAGQFGMTILSLANGGNPNSGTVARWGGSQAAIQALNEYG-TNIQHRPIE 437 Query: 277 LTAISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVV----LHFTPTVLSPGR 327 + A++ Q A T+ Y + S++ G+ SV V P +L G Sbjct: 438 MQAMNRQWARKTNLNDRSYVSETLPSTSTAAGSGSVGMKTANVTTGDRFMIQPAILDNGS 497 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKA----------DTTVELPSGGTIVLAGLLK-- 375 + LR ++ V + + +TV L +G +VL G+ + Sbjct: 498 VQLRFGISMTNLVAMTETTSGQGTSISRVQNPERSGIDDQSTVMLKAGQVMVLTGMARYK 557 Query: 376 --DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 D+ ++L EG LL+ + + E E + P L+ Sbjct: 558 AKDNRRRLAEGWSLLAG--------GSDAQSLEREEFLVVVRPVLM 595 >gi|91977981|ref|YP_570640.1| hypothetical protein RPD_3516 [Rhodopseudomonas palustris BisB5] gi|91684437|gb|ABE40739.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 161 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 39 ISDVEIGKGK-KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97 +S + G+ +S+ +++ ++++P ++ ++V +P ADV + + + GK G Sbjct: 23 MSSAAMAAGEDTVSVNVDQAKLIRLPQNISTLVVGNPLIADVTLQPGGMVVVTGKGYGAT 82 Query: 98 NVILIGHDGKQMLNLDILIE 117 NVI + G + + I +E Sbjct: 83 NVIAMDRKGAVIADRLIQVE 102 >gi|254293210|ref|YP_003059233.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814] gi|254041741|gb|ACT58536.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814] Length = 166 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 37/77 (48%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100 + +I + +++ +L + + ++V +P A V VH T+ L G + G N+I Sbjct: 58 AANPAQENEIDVYIDQTQLLHLGTPMGSIIVGNPDVATVAVHDNHTLLLTGLSFGTTNLI 117 Query: 101 LIGHDGKQMLNLDILIE 117 ++ G+ + +++ Sbjct: 118 VLDSVGRPIHKSQLMVS 134 >gi|289827429|ref|ZP_06546041.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 389 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 5/116 (4%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 253 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 308 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294 G + D +F L+ALE+++ L++P++ ++ A Sbjct: 309 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFY 363 >gi|262064151|gb|ACY07135.1| IV [Enterobacteria phage f1] Length = 294 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 10/135 (7%) Query: 168 LSQSGRNQYANSSSKKVMNLL------NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 LS G N S+ K ++N L DQ+ ++ I EV++ + F + Sbjct: 164 LSIDGSNLLVVSAPKDILNNLPQFLSTVDLPTDQILIEGLIFEVQQGDT--LDFSFAAGS 221 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281 + D +S G G+ + + AL+ + + L+ P + +S Sbjct: 222 QRGTVAGGVNTDRLTSVLSSAG--GSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLS 279 Query: 282 GQSASFTSGGQHLYK 296 GQ S + G + Sbjct: 280 GQKGSISVGQNVPFI 294 >gi|54303276|ref|YP_133269.1| hypothetical protein PBPRB1609 [Photobacterium profundum SS9] gi|46916706|emb|CAG23469.1| Hypothetical protein PBPRB1609 [Photobacterium profundum SS9] Length = 488 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 76/256 (29%), Gaps = 28/256 (10%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVS 240 + +++ QV + + I E R ++ K G I G K Sbjct: 244 QALIDSYQSELNKQVLIDIRILEFRSNLGKDRGVDWQILKEVGDGTLKFLIPGTTTSSAG 303 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 + G + ALE+ + T + +S Q A + + S Sbjct: 304 NPAGLAFTGTGKWDGTTAFIKALEQQGTVSTETPISFRTLSSQPARISQTLVTPFLEDFS 363 Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGL----RIQTEVSEPVIGVNAGDMP 349 + + TT GV + + V G + L ++ S+ V + Sbjct: 364 TVITDNTTTPTTTRGSVTEGVDMTISANVQK-GFVWLRTAGKLTKIASDTTEKVADVALR 422 Query: 350 SYRVRKADTTVE--LPSGGTIVLAGLLKDDIQQLKE---GIPLLSKIPILGALFRNSRFN 404 R AD L G T+V+ + + K GI L N Sbjct: 423 FISTRSADLNFTNKLRYGQTVVIGSIKQQTTGANKSTSFGIDGLG----------MQSTN 472 Query: 405 REETEIFIAATPFLVK 420 + E I TP V+ Sbjct: 473 NQTVETLILLTPRRVQ 488 >gi|92116017|ref|YP_575746.1| hypothetical protein Nham_0395 [Nitrobacter hamburgensis X14] gi|91798911|gb|ABE61286.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 161 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 1/104 (0%) Query: 15 FLFSSNPSVAKLPPIKEANAAVIN-ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73 F F S A + + A A ++ + + IS+ +++ ++++P + ++V + Sbjct: 3 FKFLRGRSRASVVGLSLATAILLGPTAALAEVTSDPISVNVDQAKLVKLPGHIATIVVGN 62 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 P ADV + + + GK G NVI + G +++ I +E Sbjct: 63 PLIADVTLQPGGLVVVTGKGYGATNVIAMDRAGSILVDRVIQVE 106 >gi|197105562|ref|YP_002130939.1| hypothetical protein PHZ_c2099 [Phenylobacterium zucineum HLK1] gi|196478982|gb|ACG78510.1| hypothetical protein PHZ_c2099 [Phenylobacterium zucineum HLK1] Length = 489 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 17/208 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 E + ++ + R G + + +GG+ G +V Sbjct: 219 ERNILIEAFLIRDTRSANFNEGVNLLESLALQFEGTLVNYSYGGEDEGTDGQVTVTLPAV 278 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 +S L R + A P + A G+++ F GG L +S + D Sbjct: 279 TYSLNLASRDLSRVSLE---ASPVVLARQGKTSKFLEGGSVLIVPLSDDSDPVE---RDV 332 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGT 367 G+ L TP + + L + E+S + + + + +P G Sbjct: 333 GISLEVTPERIGEHDVDLTVALELSNITGQSVNNAGRGASLLQTDKSRVEASARVPFGKA 392 Query: 368 IVLAGLLKDDIQQLKEG------IPLLS 389 +V+ ++ + G +P LS Sbjct: 393 VVVGSTGSLTRRKTRTGSLTAAPVPGLS 420 >gi|303328014|ref|ZP_07358453.1| putative type IVB pilus formation outer membrane protein, R64 PilN family [Desulfovibrio sp. 3_1_syn3] gi|302861840|gb|EFL84775.1| putative type IVB pilus formation outer membrane protein, R64 PilN family [Desulfovibrio sp. 3_1_syn3] Length = 531 Score = 61.2 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 79/247 (31%), Gaps = 29/247 (11%) Query: 183 KVMNLLNIAGEDQVTLKVTI--AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240 + +N QV L V + EV + + FQ + A G S Sbjct: 288 NYIAEINKRLSRQVALTVHVWALEVTDENEAGLDFQVLFANDNVSIVAGSLASLGSP--S 345 Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300 V G L + VL AL+ + +S Q + + Y SS Sbjct: 346 SASATIVSGKLK--NSTGVLKALKEWGNATQVTSGGGLILSNQPVPIQAIKRIAYLAGSS 403 Query: 301 ST-----GATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGD 347 S+ T +T + G + P +L R+ L+ +S E Sbjct: 404 SSQSDYGQTTEITPGEVTTGFAMTIIPHILDRRRVLLQYSINLSSLDELTEFSTSDLTVQ 463 Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407 +P R + G T+VLAG +D Q+L + LL+ F + Sbjct: 464 LPKTSTRAFSQRSTMQMGQTLVLAG-FQDQSQKLANSLGLLN--------FG-RGAKYGK 513 Query: 408 TEIFIAA 414 T + I Sbjct: 514 TLLVITI 520 >gi|90425192|ref|YP_533562.1| hypothetical protein RPC_3708 [Rhodopseudomonas palustris BisB18] gi|90107206|gb|ABD89243.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 165 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 38/74 (51%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 I++ +++ +++ P + ++V +P ADV + + + GK G NVI + G+ + Sbjct: 38 IAVNVDQAKLVRFPARIATIVVGNPLIADVTLQPGGIIVVTGKGYGATNVIAMDRAGEVL 97 Query: 110 LNLDILIERDIAHL 123 L+ I +E + Sbjct: 98 LDRVIQVEGPTDQV 111 >gi|325275755|ref|ZP_08141633.1| type II and III secretion system protein [Pseudomonas sp. TJI-51] gi|324099115|gb|EGB97083.1| type II and III secretion system protein [Pseudomonas sp. TJI-51] Length = 76 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFN 446 +PILGA FRNS R+ETE+ + TP LV+P+A+ P +H + FF Sbjct: 5 LPILGAFFRNSTMRRDETELLMIVTPHLVQPLAVNAKLPPLPGEHLRNYDPSWGRLFFLE 64 Query: 447 RVN 449 N Sbjct: 65 NGN 67 >gi|330947449|gb|EGH48078.1| type II and III secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 134 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 15/137 (10%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + I ++ V + + V DP ADV V+ L G G ++++ Sbjct: 8 VEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACASAP 67 Query: 110 LNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + + R + ++ AD+ + +Q R +E+S T L Sbjct: 68 RQSMVFVRGRATTAMVESVTAPSADAQL--------------PSQVQTDIRFIEVSRTKL 113 Query: 169 SQSGRNQYANSSSKKVM 185 ++ + + SS + Sbjct: 114 KEASTSIFGKGSSNFLF 130 >gi|299531109|ref|ZP_07044522.1| hypothetical protein CTS44_09997 [Comamonas testosteroni S44] gi|298721066|gb|EFI62010.1| hypothetical protein CTS44_09997 [Comamonas testosteroni S44] Length = 596 Score = 60.4 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 96/286 (33%), Gaps = 47/286 (16%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSS 223 + A ++V+ N + QV +++ I + + G + G++ Sbjct: 319 TTTKEAMQRIRQVVKSENESLTRQVRIQMDIYSITTKDGDEKGVNWGVVLNSLTSKWGAT 378 Query: 224 SGPSKSFAADFGGKF------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP-T 276 S D G+ ++ GG S V + + AL P Sbjct: 379 IDSPTSLVGDTAGQIGLTILSLANGGSPSSGTVGRWGGTQAAIQALNEYG-TNIQHRPIE 437 Query: 277 LTAISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVV----LHFTPTVLSPGR 327 + A++ Q A T+ Y + S++ G+ SV V P +L G Sbjct: 438 MQAMNRQWARKTNLNDRSYVSETLPSTSTAAGSGSVGMKTANVTTGDRFMIQPAILDNGS 497 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKA----------DTTVELPSGGTIVLAGLLK-- 375 + LR ++ V + + +TV L +G +VL G+ + Sbjct: 498 VQLRFGISMTNLVAMTETTSGQGTSISRVQNPERSGIDDQSTVMLKAGQVMVLTGMARYK 557 Query: 376 --DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 D+ ++L EG LL+ + + E E + P L+ Sbjct: 558 AKDNRRRLAEGWSLLAG--------GSDAQSLEREEFLVVVRPVLM 595 >gi|254473697|ref|ZP_05087092.1| conserved hypothetical protein [Pseudovibrio sp. JE062] gi|211957083|gb|EEA92288.1| conserved hypothetical protein [Pseudovibrio sp. JE062] Length = 173 Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 34 AAVINISDVEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 A + IS I + + ++ + ++ + +++ +P+ ADV VH T+ + GK Sbjct: 28 AMIAGISATSIAPAYADVEVVADQAKVFRLEEPAETIILGNPSIADVTVHDRLTIVITGK 87 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAH 122 + G N++++ + ++ I + ++A Sbjct: 88 SYGTTNLVVLNDASEPVVEELITVTAEMAG 117 >gi|170749896|ref|YP_001756156.1| hypothetical protein Mrad2831_3496 [Methylobacterium radiotolerans JCM 2831] gi|170656418|gb|ACB25473.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM 2831] Length = 164 Score = 60.1 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 8/120 (6%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 +++ ++ +L++P V+V +P A+V + L GK+ G N+I + + G + Sbjct: 33 VTVLVDNAKVLRLPEKTSTVIVGNPIIAEVTPQKNGVLVLTGKSFGSTNLIALDNGGAMI 92 Query: 110 LNLDILIERDI-------AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162 I +E L+ V+ + D+ G D++R + Sbjct: 93 AETTIRVEASRDSTITVQRGLDRESLSCTPGCQPSVQ-LGDSASYFGATSGQADARRKLA 151 >gi|331013472|gb|EGH93528.1| type II and III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 234 Score = 60.1 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 61/198 (30%), Gaps = 19/198 (9%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 S+ + + N A QV V + E Q+ + +S + Sbjct: 37 SNIETYLAKTNHAITQQVLFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPG 96 Query: 239 VSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 +S G++D + ++ A+ I + P++T ++ Q A G Sbjct: 97 ISSSAISGSVGIVDTANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQ 156 Query: 294 LYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS------EP 339 Y + SV T G + P ++ + L + +S Sbjct: 157 GYIPSVQTNTTASVGSSTAITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPF 216 Query: 340 VIGVNAGDMPSYRVRKAD 357 ++ +P+Y + Sbjct: 217 TSNGSSVQIPNYDAKSLS 234 >gi|28173601|gb|AAO32809.1| XpsD [Xanthomonas oryzae pv. oryzae] Length = 65 Score = 60.1 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428 IP LSK+P++GALF + N E+ + TP +V+ P R+L+ Sbjct: 1 IPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVRNPQEARNLT 45 >gi|283851709|ref|ZP_06368987.1| type IVB pilus formation outer membrane protein [Desulfovibrio sp. FW1012B] gi|283572829|gb|EFC20811.1| type IVB pilus formation outer membrane protein [Desulfovibrio sp. FW1012B] Length = 468 Score = 60.1 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 77/246 (31%), Gaps = 25/246 (10%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + LN+ QV L V + + + G S + + + ++ Sbjct: 229 TYVEDLNVRLSRQVALNVQVWSLNVTDNAEAGINLQALFQDSNLTVAAGSLSEVGAINTA 288 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-----KT 297 + G L VL AL + + +SGQ + +H Y K+ Sbjct: 289 TATILSGKLK--DSAGVLKALGQWGKASQVTSAGGLVMSGQPVPVMAVQRHAYLAGVGKS 346 Query: 298 VSSSTGATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMP 349 + + T VT + G + P +L R+ L+ +S E ++P Sbjct: 347 TTDYSQTTEVTPGEVTTGFAMTVIPHILDQRRVILQYNLNLSSLDEMKEFTTSDVTIELP 406 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + + G T+VL G K+ K LG + + + T Sbjct: 407 QVSTQAFSQRSTMKLGQTLVLCGFEKESNSNKKT----------LGFINASRASDYGRTL 456 Query: 410 IFIAAT 415 + I Sbjct: 457 LVITIR 462 >gi|213621880|ref|ZP_03374663.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 52 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%) Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 + + L +G +++L G + + IPLL IP++G LFRN Sbjct: 1 SEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQ 51 >gi|254418061|ref|ZP_05031785.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3] gi|196184238|gb|EDX79214.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3] Length = 138 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 36/77 (46%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 + +++ +++ +Q+ V+V +P ADV V T+++ GK G V+ + Sbjct: 26 QSGALNVEIDRSARVQLNGAASSVIVGNPQIADVTVVDANTLFIVGKGYGVTEVVAVDGV 85 Query: 106 GKQMLNLDILIERDIAH 122 G+ + +I++ Sbjct: 86 GRTLFQREIVVTGGSTG 102 >gi|37522852|ref|NP_926229.1| hypothetical protein gll3283 [Gloeobacter violaceus PCC 7421] gi|35213854|dbj|BAC91224.1| gll3283 [Gloeobacter violaceus PCC 7421] Length = 234 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 65/215 (30%), Gaps = 26/215 (12%) Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269 +QI F I ++ + G + G S + + + RA Sbjct: 44 SQQIVFSIQIIELDGTGLQTLSKAIYGTQPTTGTPASAE---NANRLRRAIFEQVRAGRG 100 Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-SVTTHDYGVVLHFTPTVLSPGRI 328 R + + LT SG+ A F S + + +T G L F P VL G I Sbjct: 101 RLVVDTELTVGSGERAGFDSQLDMNFTLAPQDRSKPPTFSTVRAGNRLEFEPAVLPDGNI 160 Query: 329 GLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 +I+ + S N G +T+ T+ L L +P Sbjct: 161 LTKIRVDASVAAARDRNTGRPIDITRSSIYSTLTFQPNQTVAFGNL-----TSLGTSVP- 214 Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 IP TE I TP LV Sbjct: 215 ---IP------------ANRTEQIILITPRLVSAT 234 >gi|220923702|ref|YP_002499004.1| hypothetical protein Mnod_3797 [Methylobacterium nodulans ORS 2060] gi|219948309|gb|ACL58701.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060] Length = 151 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 35/75 (46%) Query: 43 EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 +++ +V I++ + V+V DP ADV V + T+ + K G +++L+ Sbjct: 15 SASAADSLALRPGQVEIVKTSRGARTVVVGDPDIADVTVANESTIVVTAKENGVTDLVLL 74 Query: 103 GHDGKQMLNLDILIE 117 G++ L + I Sbjct: 75 DESGREFLRKQLQIG 89 >gi|304392391|ref|ZP_07374332.1| PilQ [Ahrensia sp. R2A130] gi|303295495|gb|EFL89854.1| PilQ [Ahrensia sp. R2A130] Length = 171 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 69/168 (41%), Gaps = 19/168 (11%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG--KKISIGLNKVIILQVPVD 65 F S + ++A A V+ ++ + G K + + +++ ++++ Sbjct: 3 FMAKFSPTSAIRSFALAGAFFAPIIAATVLPVAALADGHSAKKHLEVVVDRARVVRIAKP 62 Query: 66 VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 V+V +P+ D + RT+ L G+ G N+I++ DG +++ ++++ + +L Sbjct: 63 ADTVIVGNPSIVDATIQDARTLVLTGRLFGVTNIIVLDSDGDPIVDETVVVKGEETNLVH 122 Query: 126 TLRRF----------------IADSNIRVEMVSDTVVLH-GMVRTIQD 156 R+ + D R E ++ + G+ ++ D Sbjct: 123 VYRQANRETLACAPVCQTTLTLGDEKERFETINGQITARNGLAESVGD 170 >gi|289675698|ref|ZP_06496588.1| type II and III secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 133 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 15/137 (10%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + I ++ V + + V DP ADV V+ L G G ++++ Sbjct: 11 VEIDQGIQQEVRSVVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACASAP 70 Query: 110 LNLDILI-ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 + + R + ++ AD+ + +Q R +E+S T L Sbjct: 71 RQSMVFVRGRATTTMVESVTAPSADAQL--------------PSQVQTDIRFIEVSRTKL 116 Query: 169 SQSGRNQYANSSSKKVM 185 ++ + + SS + Sbjct: 117 KEASTSIFGKGSSNFLF 133 >gi|163756987|ref|ZP_02164094.1| type II general secretion pathway (GSP) D protein [Kordia algicida OT-1] gi|161323106|gb|EDP94448.1| type II general secretion pathway (GSP) D protein [Kordia algicida OT-1] Length = 612 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 58/164 (35%), Gaps = 11/164 (6%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVRRDILK 211 D +++ + S +SS K+ N + + V ++V + +V + + Sbjct: 435 PADLIADLQIEADYELNSFYVSGPSSSVKRFRNFVEKIDKPVPVVLIEVMLIDVSKLSVV 494 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---------TVLHA 262 + G I + S S + + + G SF + A Sbjct: 495 ETGISWGIGDEPTQTSGSLFPTTNLTLGANTVNRVIGGFDGFGSFNLGKVVPEFFANISA 554 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306 +E+ I+ + P ++ ++G A+ ++G Y + T+ Sbjct: 555 MEQDGDIKIRSTPKISTLNGHRATLSNGTTSYYAVTQRNIYGTN 598 >gi|220922775|ref|YP_002498077.1| hypothetical protein Mnod_2823 [Methylobacterium nodulans ORS 2060] gi|219947382|gb|ACL57774.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060] Length = 161 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 35/74 (47%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + ++ I+++P V+V +P ADV + + L GK+ G N+I + G + Sbjct: 40 VVVSVDNAKIIRLPERTATVVVGNPIIADVTLQRNGIVILTGKSFGSTNLIALDAAGTML 99 Query: 110 LNLDILIERDIAHL 123 I ++ + + Sbjct: 100 AESFISVQAATSSV 113 >gi|170740625|ref|YP_001769280.1| hypothetical protein M446_2388 [Methylobacterium sp. 4-46] gi|168194899|gb|ACA16846.1| conserved hypothetical protein [Methylobacterium sp. 4-46] Length = 158 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108 + + ++ I+++P V+V +P ADV + + L GK+ G N+I + G Sbjct: 36 TVVVSVDNAKIIRLPERTATVVVGNPIIADVSLQRNGLVILTGKSFGTTNLIALDGSGAM 95 Query: 109 MLNLDILIERDIAHL 123 + I ++ + Sbjct: 96 LAESFISVQAATTSV 110 >gi|166219|gb|AAA32222.1| gene IV protein [Enterobacteria phage f1] Length = 51 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%) Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422 GL G+P LSKIP++G LF + + EE+ +++ +V+ + Sbjct: 1 GLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 51 >gi|308094760|ref|ZP_07663039.1| fimbrial assembly protein [Vibrio parahaemolyticus AN-5034] gi|308089697|gb|EFO39392.1| fimbrial assembly protein [Vibrio parahaemolyticus AN-5034] Length = 73 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 41/70 (58%) Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 + ++ T V + +G T+VL G+ + I + +PLL +P+LGALFR S N ++E Sbjct: 2 AIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSYENVGKSE 61 Query: 410 IFIAATPFLV 419 + I TP +V Sbjct: 62 LLIFVTPKVV 71 >gi|240142222|ref|YP_002966732.1| hypothetical protein MexAM1_META2p0544 [Methylobacterium extorquens AM1] gi|240012166|gb|ACS43391.1| Hypothetical protein MexAM1_META2p0544 [Methylobacterium extorquens AM1] Length = 575 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 66/244 (27%), Gaps = 55/244 (22%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 I + P + G VS+ + G S + L + + Sbjct: 318 GIGLTQIDPGRVMDLTKDGLVVSQTSLGRLGGAFGATSITGAIDFLSTFGTTKVDQNVQM 377 Query: 278 TAISGQSASFTSGGQHLYK-----------------TVSSSTGATSVTTH-DYGVVLHFT 319 +SG SG Q Y +S+T + G+ + T Sbjct: 378 KTLSGTEVKLRSGQQVPYVRGVQLAGLGAGGYGNGYGGGYGGLGSSLTDKVETGLTMEVT 437 Query: 320 PTVLSPGRI-GLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVL 370 P S + + + ++ E + + P + ++ V + +G T+V+ Sbjct: 438 PYFDSDAEVVTMEVDVKLKEILSFVELNAGNQIGTFTQPLTQDQELTNIVRMQAGRTVVI 497 Query: 371 AGLLKDDIQ----------------QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 GL D G+ F N + +FI Sbjct: 498 GGLQSDSESYNGTEPTALRNATATRAGGSGV------------FGNRSQKVKRNALFIIL 545 Query: 415 TPFL 418 P + Sbjct: 546 RPAV 549 >gi|332765291|gb|EGJ95516.1| hypothetical protein SFK671_5251 [Shigella flexneri K-671] Length = 422 Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 11/134 (8%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 + + L + I ++ + L +G + SF FG F + LD Sbjct: 298 KRHIELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSASISTLD 348 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 F + AL + ++ P + A F + V +S+ Y Sbjct: 349 GNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSLEHVTY 406 Query: 313 GVVLHFTPTVLSPG 326 G +++ P G Sbjct: 407 GTLINVIPRFSVSG 420 >gi|281355410|ref|ZP_06241904.1| hypothetical protein Vvad_PD3516 [Victivallis vadensis ATCC BAA-548] gi|281318290|gb|EFB02310.1| hypothetical protein Vvad_PD3516 [Victivallis vadensis ATCC BAA-548] Length = 355 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 101/317 (31%), Gaps = 38/317 (11%) Query: 98 NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ-- 155 NV++ + + D+ D+A + + + + + + G I+ Sbjct: 15 NVVVFDDLKDKPIFADVS-GCDLADVLDLITWLLGVEWVE---RAGQYYIGGNQSKIEVL 70 Query: 156 -------DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL-KVTIAEVRR 207 ++ + ++ Q KK+ + L E V L ++ + EV Sbjct: 71 PSLGIDSKLEQVFPNAVKLVNDKIIAQGTERELKKISDALTSTLERDVALCQLKVIEVVY 130 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 D Q+G + + ++ + S + + Sbjct: 131 DDRFQVGLDWEKSFEYAVSWENMVKNV------------HPVTHAAMSLAASVQLDQAVI 178 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVL 323 + R + + + +SG G + S+S V T G+++ + Sbjct: 179 STRYVIDTQVGILSGSKVELNIGDEIDRPIYSTSEYGNRVLSGYNTQKTGLLIGLSAYHA 238 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD-IQQLK 382 + E S PV + + K T V++ +LA + ++ Sbjct: 239 GSAWV-FDASVEHSRPVTDLQ------KTLSKVTTQVKIEDSRPFLLANVSSSGGETNIE 291 Query: 383 EGIPLLSKIPILGALFR 399 +G+P L ++P +G LF Sbjct: 292 QGVPFLCRLPWIGFLFG 308 >gi|166216|gb|AAA32221.1| gene IV [Enterobacteria phage f1] Length = 60 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 25/58 (43%) Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395 + + R TTV L G T++L GL G+P LSKIP++G Sbjct: 2 DSLSSSTQASDVITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIG 59 >gi|315121901|ref|YP_004062390.1| hypothetical protein CKC_00755 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495303|gb|ADR51902.1| hypothetical protein CKC_00755 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 206 Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH-SPRTMYLFGKNVGQANVILIGHDG 106 K+I I + + I+L+ +V++ + DV+ +++ + GK G N+I++G Sbjct: 105 KRIRIAIGQSIVLKFDSLPSEVIIGNDQITDVLALEKEKSIVITGKKSGLTNIIVLGAGN 164 Query: 107 KQMLNLDI 114 K +L DI Sbjct: 165 KVLLETDI 172 >gi|294784350|ref|ZP_06749641.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27] gi|294487922|gb|EFG35277.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27] Length = 407 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 9/141 (6%) Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 QV + I ++ ++ +++GF S S A GK G +V V Sbjct: 266 NPKQVKITSQILDISNNLFEELGFNWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIV 325 Query: 251 LDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304 + ++ LE + + PTL SG+ F + + + Sbjct: 326 RQFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKD 385 Query: 305 --TSVTTHDYGVVLHFTPTVL 323 + + G+++ P ++ Sbjct: 386 RYSEPIFKEAGLIMKVKPFIV 406 >gi|254513594|ref|ZP_05125658.1| Bacterial type II and III secretion system protein [Rhodobacteraceae bacterium KLH11] gi|221532103|gb|EEE35100.1| Bacterial type II and III secretion system protein [Rhodobacteraceae bacterium KLH11] Length = 499 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 28/256 (10%) Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + + KV+ ++ ++V + + +G+ S + A G Sbjct: 251 QARAAKVIADFEEVYSTRIAIEVAVFFIDTSKTDTFAVGLEGSGTHGAISGAVGALTGSG 310 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + DF AL + +++ + A SG A Y + Sbjct: 311 VATLTNDFG----------SINFQALAKNSSVVDYRLASTIAQSGTIAPIALPALVNYVS 360 Query: 298 VSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ------TEVSEPVIGV 343 T T D G+ +H P ++ RI L + TE+ + G Sbjct: 361 SIGETKNEDGTTTTTVETDTIDTGISIHALPRLVRDNRIQLSLTLVQNDLTELEDFDTGD 420 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 +P R L G T++L+G +D + G ++K LG + Sbjct: 421 GTVQLPKIDQRAIQNDSLLAPGETLILSGYEQDKATRSNTGT-GIAKFIGLG---GRIKG 476 Query: 404 NREETEIFIAATPFLV 419 + + + P ++ Sbjct: 477 EVGKVRMVVFVRPAII 492 >gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62] gi|254547834|gb|ACT57211.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62] Length = 135 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH-SPRTMYLFGKNVGQANVILIGH 104 +I I + + +ILQ V + V+V D DV+ +T+ + GKN+G N+I++GH Sbjct: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90 Query: 105 DGKQMLNLDIL 115 + +L+ +I Sbjct: 91 NNDILLDTEIA 101 >gi|320174025|gb|EFW49195.1| General secretion pathway protein D [Shigella dysenteriae CDC 74-1112] Length = 493 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 37/179 (20%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG 493 >gi|320184381|gb|EFW59193.1| General secretion pathway protein D [Shigella flexneri CDC 796-83] Length = 493 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 37/179 (20%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG 493 >gi|332091465|gb|EGI96550.1| general secretion pathway protein D [Shigella boydii 3594-74] Length = 493 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 37/179 (20%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G V + ++ + Q S + V+ L+I QV ++ I EV Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374 Query: 208 DILKQIGFQHS--------ITGSSSGPSKSFAADF-------GGKFVSEGGDFSVKGVLD 252 G Q + + P + A G +SE G ++ + Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434 Query: 253 R---------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290 + ++ A++ ++ L+ P++T + Q A F G Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVG 493 >gi|48411|emb|CAA45458.1| tcpC (lipoprotein) [Vibrio cholerae] gi|383775|prf||1904214A outer membrane lipoprotein Length = 489 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 17/218 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + L + Q+ + + + + L Q+ + I + S D G Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVD-AISLSQVG 301 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASFTSGGQHLYKTVSS 300 G + V++ L + + E I + T+ +++ ++ Sbjct: 302 GGLGASYRSASARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETT 357 Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351 T T G + P +L GRI + + + +P+ Sbjct: 358 KDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTV 417 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ TV + G + LA L KD+ Q G+ LL Sbjct: 418 DENESMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454 >gi|153818067|ref|ZP_01970734.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae NCTC 8457] gi|126511413|gb|EAZ74007.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae NCTC 8457] Length = 489 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 17/218 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + L + Q+ + + + + L Q+ + I + S D G Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVD-AISLSQVG 301 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASFTSGGQHLYKTVSS 300 G + V++ L + + E I + T+ +++ ++ Sbjct: 302 GGLGASYRSASARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETT 357 Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351 T T G + P +L GRI + + + +P+ Sbjct: 358 KDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTV 417 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ TV + G + LA L KD+ Q G+ LL Sbjct: 418 DENESMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454 >gi|147675545|ref|YP_001216312.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae O395] gi|262168740|ref|ZP_06036435.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae RC27] gi|13377522|gb|AAK20758.1|AF325733_14 toxin-coregulated pilus biosynthesis outer membrane protein C (lipoprotein) [Vibrio cholerae] gi|146317428|gb|ABQ21967.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae O395] gi|227012652|gb|ACP08862.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae O395] gi|262022858|gb|EEY41564.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae RC27] Length = 489 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 17/218 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + L + Q+ + + + + L Q+ + I + S D G Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVD-AISLSQVG 301 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASFTSGGQHLYKTVSS 300 G + V++ L + + E I + T+ +++ ++ Sbjct: 302 GGLGASYRSASARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETT 357 Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351 T T G + P +L GRI + + + +P+ Sbjct: 358 KDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTV 417 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ TV + G + LA L KD+ Q G+ LL Sbjct: 418 DENESMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454 >gi|254225078|ref|ZP_04918692.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae V51] gi|125622465|gb|EAZ50785.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae V51] Length = 489 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 17/218 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + L + Q+ + + + + L Q+ + I + S D G Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVD-AISLSQVG 301 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASFTSGGQHLYKTVSS 300 G + V++ L + + E I + T+ +++ ++ Sbjct: 302 GGLGASYRSASARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETT 357 Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351 T T G + P +L GRI + + + +P+ Sbjct: 358 KDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTV 417 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ TV + G + LA L KD+ Q G+ LL Sbjct: 418 DENESMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454 >gi|258620016|ref|ZP_05715056.1| Toxin coregulated pilus biosynthesis outer membrane protein C [Vibrio mimicus VM573] gi|258587749|gb|EEW12458.1| Toxin coregulated pilus biosynthesis outer membrane protein C [Vibrio mimicus VM573] Length = 489 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 17/218 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + L + Q+ + + + + L Q+ + I + S D G Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVD-AISLSQVG 301 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASFTSGGQHLYKTVSS 300 G + V++ L + + E I + T+ +++ ++ Sbjct: 302 GGLGASYRSASARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETT 357 Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351 T T G + P +L GRI + + + +P+ Sbjct: 358 KDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTV 417 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ TV + G + LA L KD+ Q G+ LL Sbjct: 418 DENESMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454 >gi|153930563|ref|YP_001393255.1| PilN family type IV pilus biogenesis protein [Yersinia pseudotuberculosis IP 31758] gi|152958107|gb|ABS45570.1| type IV pilus/secretion system protein, PilN family [Yersinia pseudotuberculosis IP 31758] Length = 568 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 81/253 (32%), Gaps = 31/253 (12%) Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGV 250 QV KV I + ++ +G I S + A+ G G F + Sbjct: 319 SKQVLFKVVIYTITSEVSDNVGIDWDIIFKSLSGKYGINLASSSGLSTDLANGSFEILDT 378 Query: 251 LDR-----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVS 299 + +L AL + + L + +A G Q Y ++ Sbjct: 379 ATGKAAQFAGSQFMLQALSKQANVTDTKTLNLMTTNLATAGLLIGKQTTYLQRSSITSIG 438 Query: 300 SSTGATSVTTHD-----YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD---- 347 S + V + + G + P +L+ + + + + ++ D Sbjct: 439 SGNSSEPVQSLEPGQITTGTNIVILPKILNDNEKMMLTMMLDITSLNKLRKIDTADKKLS 498 Query: 348 --MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405 P + L G TI+++G + K+G+ + I I+G N + Sbjct: 499 IEGPDSDSSSIPQRIWLKPGETILMSGFEQIVKDGSKQGMGDPNNI-IMG---GNMSGSD 554 Query: 406 EETEIFIAATPFL 418 ++ I TP L Sbjct: 555 KKQSFVITITPIL 567 >gi|15640848|ref|NP_230479.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585745|ref|ZP_01675540.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae 2740-80] gi|153822050|ref|ZP_01974717.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae B33] gi|227081008|ref|YP_002809559.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae M66-2] gi|229505558|ref|ZP_04395068.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae BX 330286] gi|229510771|ref|ZP_04400250.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae B33] gi|229517892|ref|ZP_04407336.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae RC9] gi|229608577|ref|YP_002879225.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae MJ-1236] gi|254847967|ref|ZP_05237317.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae MO10] gi|255744631|ref|ZP_05418582.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholera CIRS 101] gi|262161237|ref|ZP_06030348.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae INDRE 91/1] gi|298499040|ref|ZP_07008847.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae MAK 757] gi|14548352|sp|P29481|TCPC_VIBCH RecName: Full=Toxin coregulated pilus biosynthesis outer membrane protein C; AltName: Full=TCP pilus biosynthesis protein tcpC; Flags: Precursor gi|13377553|gb|AAK20788.1|AF325734_14 toxin-coregulated pilus biosynthesis outer membrane protein C (lipoprotein) [Vibrio cholerae] gi|9655282|gb|AAF93994.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550108|gb|EAX60124.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae 2740-80] gi|126520444|gb|EAZ77667.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae B33] gi|227008896|gb|ACP05108.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae M66-2] gi|229344607|gb|EEO09581.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae RC9] gi|229350736|gb|EEO15677.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae B33] gi|229357781|gb|EEO22698.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae BX 330286] gi|229371232|gb|ACQ61655.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae MJ-1236] gi|254843672|gb|EET22086.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae MO10] gi|255737662|gb|EET93056.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholera CIRS 101] gi|262028987|gb|EEY47640.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae INDRE 91/1] gi|297543373|gb|EFH79423.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae MAK 757] Length = 489 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 17/218 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + L + Q+ + + + + L Q+ + I + S D G Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVD-AISLSQVG 301 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASFTSGGQHLYKTVSS 300 G + V++ L + + E I + T+ +++ ++ Sbjct: 302 GGLGASYRSASARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETT 357 Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351 T T G + P +L GRI + + + +P+ Sbjct: 358 KDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTV 417 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ TV + G + LA L KD+ Q G+ LL Sbjct: 418 DENESMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454 >gi|281355403|ref|ZP_06241897.1| hypothetical protein Vvad_PD3509 [Victivallis vadensis ATCC BAA-548] gi|281318283|gb|EFB02303.1| hypothetical protein Vvad_PD3509 [Victivallis vadensis ATCC BAA-548] Length = 283 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 81/248 (32%), Gaps = 25/248 (10%) Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL-KVTIAEVRRDILKQIGFQ 216 ++ + ++ Q KK+ + L E V L ++ + EV D Q+G Sbjct: 8 EQVFPNAVKLVNDKIIAQGTERELKKISDALTSTLERDVALCQLKVIEVVYDDRFQVGLD 67 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276 + + ++ + S + + + R + + Sbjct: 68 WEKSFEYAVSWENMVKNV------------HPVTHAAMSLAASVQLDQAVISTRYVIDTQ 115 Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVLSPGRIGLRI 332 + +SG G + S+S V T G+++ + + Sbjct: 116 VGILSGSKVELNIGDEIDRPIYSTSEYGNRVLSGYNTQKTGLLIGLSAYHAGSAWV-FDA 174 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD-IQQLKEGIPLLSKI 391 E S PV + + K T V++ +LA + +++G+P L ++ Sbjct: 175 SVEHSRPVTDLQ------KTLSKVTTQVKIEDSRPFLLANVSSSGGETNIEQGVPFLCRL 228 Query: 392 PILGALFR 399 P +G LF Sbjct: 229 PWIGFLFG 236 >gi|116249977|ref|YP_765815.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254625|emb|CAK05699.1| putative pilus subunit transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] Length = 136 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 12/112 (10%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + ++ +L++ V V+V + AD V +T+ L G++ G N++L+ DG + Sbjct: 31 LRVYMDHARVLKLDRPVSKVIVGNAAVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 90 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 L+ IL+ D + +RV + VL Q +Q+A Sbjct: 91 LDERILVSID------------EGNTVRVYRQTQRSVLSCTPNCEQHAQQAA 130 >gi|295701132|ref|YP_003610133.1| type II secretory pathway component PulD-like protein [Burkholderia sp. CCGE1002] gi|295441455|gb|ADG20622.1| type II secretory pathway component PulD-like protein [Burkholderia sp. CCGE1002] Length = 538 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 53/271 (19%), Positives = 93/271 (34%), Gaps = 38/271 (14%) Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAADFG 235 A K++ N QV L+V ++ + Q G + + G +A F Sbjct: 275 AADRMGKLLAQENAVSTRQVMLRVRTLQIALNNGSQAGVNADVVFNYIQGGLARYAVSFT 334 Query: 236 G--KFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTS- 289 S GG + + F V++AL + + T ++G S S Sbjct: 335 SPTSLSSGGGTVGLSVLQANAPFSGTNAVINALNQYGRTVQDSTQTKMTLNGLPVSIASF 394 Query: 290 GGQHLYKTVSSSTGATSVT----------THDYGVVLHFTPTVLSPGRIGLRI---QTEV 336 ++ S S G+ + T T G ++ P V +I L +++ Sbjct: 395 QSDDYLRSTSPSAGSLTATSGGVPGLTPGTVTTGDFVNILPAVNDHNQIILSYWADSSKL 454 Query: 337 SEPVIGVNAGDMPSYRV--------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388 + P + G + + K D T+ L G T+VL G + D G + Sbjct: 455 NGPFTSASVGSGQTLQQIQLAHTTGSKEDQTIALSDGQTVVLYGQMTDLANSTTNG--GI 512 Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419 + I L +N+ +T I T +V Sbjct: 513 AGITGL--------WNKSKTFQVIMLTATVV 535 >gi|148553725|ref|YP_001261307.1| TPR repeat-containing protein [Sphingomonas wittichii RW1] gi|148498915|gb|ABQ67169.1| Tetratricopeptide TPR_2 repeat protein [Sphingomonas wittichii RW1] Length = 465 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 83/276 (30%), Gaps = 31/276 (11%) Query: 196 VTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 + ++ + R G S+ G +++ D G ++ G+ Sbjct: 198 ILIEAFLIRDTRSAGLSDGINLLDSLALQFGGTLVNYSYDSAGHETRGDVSVTLPGISYS 257 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + + + A P + A G+++ F GG L ++ + D G Sbjct: 258 LNLAAR-----DLSRVSLEASPLVLARQGKTSKFLEGGSVLIVPLADDSDPVE---RDVG 309 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGTI 368 + + TP + + L + E+S + + + +P + Sbjct: 310 ITVEVTPEQIGEDYVDLAVVLELSNITGQSLSDAGRGASLLQTDKTRVEAAARVPFRKAV 369 Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428 ++ ++ + + +P L + + ++ + Sbjct: 370 LVGSTGSLTRRKSGNRSLVAAPLPGL----STNGSSASRRDVLALISVR----------- 414 Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464 R DD + DA A R+ P AS E + Sbjct: 415 RADDQVTPPLDADA-LAKRLFDTALPAPASYGERPS 449 >gi|281356795|ref|ZP_06243286.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316922|gb|EFB00945.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 502 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 56/287 (19%), Positives = 92/287 (32%), Gaps = 61/287 (21%) Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--------AADFGGKFVSEGGDFSVK 248 L T+ EVR IL+ +G + G +GP + + GG + Sbjct: 192 NLSFTVYEVRDSILRDLGIDY--LGWRNGPGLNLFQAGMDALSLSSGGSSAVNAASGAFG 249 Query: 249 GVLDRFSFET-VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL------------- 294 G F+ + L++ +LT + SA ++ G Sbjct: 250 GFFFAPQFDASFIRILQQDGLANIANTASLTVANSDSAVYSIGFHPESQAIFKRDNDQLQ 309 Query: 295 -----------YKTVSSSTGAT----SVTTHDYGVVLHFT-PTVLSPGRIGLRI-QTEVS 337 K SSTGA + + + L T P + G R Q Sbjct: 310 VGVSGLGMQGGVKPPESSTGAENPLLTGSAPPPPLALSVTAPRICFRGEADARTGQVPYR 369 Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPS-------------GGTIVLAG----LL---KDD 377 + ++ + V + G +L+G L K+ Sbjct: 370 LSDYNTTVNALVTFNYKIQVADVVERNNYGAELAEIDQLSGDCNLLSGEEKILTMWHKES 429 Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424 + G+P LS+IPIL LF + NRE+T F+ L P ++ Sbjct: 430 EVEQTIGVPFLSEIPILKHLFSTTTINREKTWYFVTVRTVLAHPESL 476 >gi|217077117|ref|YP_002334833.1| secretin and TonB N terminus short domain protein [Thermosipho africanus TCF52B] gi|217036970|gb|ACJ75492.1| secretin and TonB N terminus short domain protein [Thermosipho africanus TCF52B] Length = 360 Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 85/268 (31%), Gaps = 23/268 (8%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213 + A ELS+ + +SS + I Q+ V+I +V++ K Sbjct: 106 PLRYKTASELSKVLPKELKEYILYSSSEDSITVFAPIPVASQIANIVSILDVKK---KSY 162 Query: 214 GFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 I S KSF + G FS+ + + + + Sbjct: 163 TANIKIIDVSESYLKSFLLKINYSQERLNDLLSGAIFSIPLYGNYLNL--LFSSTTENKD 220 Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL-SPGR 327 + + + +SG +S + + L + S + + TP L S Sbjct: 221 FDLIYDGNIKMLSGVKSSLRTSKKVLVDEIV--DNKISKKAVESNISFELTPYFLKSSAL 278 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I L I E IG + + T V + V+ ++ G+ Sbjct: 279 IDLNINLEN----IGTDRLG------SQVSTKVPIDFSVPKVIGAYSYLKSERADGGLSF 328 Query: 388 LSKIPILGALFRNSRFNREETEIFIAAT 415 L +PI+G LF+ + E+ I Sbjct: 329 LMDLPIIGNLFKQNFEKHEKRYILFVLR 356 >gi|327543373|gb|EGF29799.1| type II and III secretion system protein [Rhodopirellula baltica WH47] Length = 376 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 2/120 (1%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV L+ I V D Q G G + + G E + + Sbjct: 255 PQVVLEAIICVVSPDSGFQFGLDWQHAVEMDGVKELSLSASGLALNGELSQAGLDAIFSD 314 Query: 254 F-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-VSSSTGATSVTTHD 311 F + + L + A P + A G+ A+ + + STG SV Sbjct: 315 FGNTSAFVRLLSEKGYLTIRATPHVMAKDGEQANIAINRETFFSVQPPGSTGNNSVFFQQ 374 >gi|157165775|ref|YP_001467405.1| protein yitk [Campylobacter concisus 13826] gi|157101562|gb|ABV23530.1| hypothetical protein CCC13826_2274 [Campylobacter concisus 13826] Length = 128 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397 E ++ ++ P ++ ++ L G +VL+G+ K + + G+P+L I +L L Sbjct: 49 EDILSQSSSFTPIVSKKELKSSYSLKRGDVLVLSGINKKTNAKQRNGVPVLKDIWLLKYL 108 Query: 398 FRNSRFNREETEIFIAATPFLV 419 F E + T ++ Sbjct: 109 FS--VEQDSEINSVLTLTIQII 128 >gi|171911831|ref|ZP_02927301.1| probable penicillin resistance regulatory protein [Verrucomicrobium spinosum DSM 4136] Length = 711 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 84/263 (31%), Gaps = 60/263 (22%) Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241 ++++ L+ QV L+ E+ GP + A K + Sbjct: 295 DQLLDQLSAHAPLQVLLETRWIELL------------APPEEGGPVSTALATLQEKRTAN 342 Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301 G + + +L ++ ++ + + ++ P++T GQ A + + ++ Sbjct: 343 G--RANEAILSDPDYQNIIRLFSQQKGVHLVSNPSVTTRMGQKAVVEVIREVR-RPGEAA 399 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQT------EVSEPVIGVNAGDMPSYR 352 G G+ F P + G+ + + + ++E + G +P+ Sbjct: 400 KGLNDDHF--VGIQNSFEPVRTADGKKVQVSMTAKLRRLAGRSIAESNALIKDGILPAGE 457 Query: 353 VRKADT---TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409 A T V L G T+ + I + Sbjct: 458 RILAFTNSAEVSLTDGETVCM-------------------DI----------GTAEDHRR 488 Query: 410 IFIAATPFLVKPVAMRDLSRPDD 432 + + T +VKP L++P+D Sbjct: 489 LLLFVTSKIVKPAEA--LTKPED 509 >gi|108763383|ref|YP_628353.1| serine/threonine kinase family protein [Myxococcus xanthus DK 1622] gi|108467263|gb|ABF92448.1| serine/threonine kinase family protein [Myxococcus xanthus DK 1622] Length = 478 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 2/106 (1%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPP-IKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 + +R + + P + +++AA + I + + V L Sbjct: 362 AWGRRGILALAGAGSLVVLGVLLWKPSFLFQSDAATPRAESLGRMAASLIVLRVGDVHEL 421 Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 VP +Q + V +P+ +V V + L GK G ++I H G Sbjct: 422 AVPG-LQRIAVGEPSLVEVTVPRQGVVRLKGKEEGSTDLITWSHAG 466 >gi|229592009|ref|YP_002874128.1| secretory protein [Pseudomonas fluorescens SBW25] gi|229363875|emb|CAY51352.1| secretory protein [Pseudomonas fluorescens SBW25] Length = 481 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 78/272 (28%), Gaps = 14/272 (5%) Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172 D+ + + + L +AD V L GM I+ L+ Sbjct: 167 DLRVGKQAFGVVQVLNTDVADRQYGTSDSP--VTLPGMASMIETL-----LATEHQGMLA 219 Query: 173 RNQYANSSSKKVMNLLNIAGEDQVT-LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 + +LL QV+ ++ +AE+ + I + K Sbjct: 220 DKSLGVIAYPDSNSLLIKGKPAQVSFIQKLVAELDIPK-RSIEVSLWLVDLERDELKKLG 278 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 D+G + V +D + ALER P + A F Sbjct: 279 MDWGDD--TNTSTTRVLAPVDDSHLMASIGALERRRRATVATLPVILTQENVPAVFQDNH 336 Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351 S T YG + P +I +R++ + + + + Sbjct: 337 TFYMPPPGSDR--TDWKPVRYGTQVSVLPRFAEANQIEMRLEVQDGRQMSEAPGREKNTA 394 Query: 352 RVRK-ADTTVELPSGGTIVLAGLLKDDIQQLK 382 R ++ V LP G + L + + + Sbjct: 395 VGRVGVNSVVRLPPGRRLWLGAFNRKSEGRGR 426 >gi|241207153|ref|YP_002978249.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861043|gb|ACS58710.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 136 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%) Query: 50 ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + + ++ +L++ V V+V + AD V +T+ L G++ G N++L+ DG + Sbjct: 31 LRVYMDHARVLKLDRPVSKVIVGNAAVADATVADAKTIVLTGRSFGTTNLVLLDADGNAI 90 Query: 110 LNLDILIERD 119 L+ IL+ D Sbjct: 91 LDERILVSID 100 >gi|312962468|ref|ZP_07776959.1| invasion protein - outer membrane [Pseudomonas fluorescens WH6] gi|311283395|gb|EFQ61985.1| invasion protein - outer membrane [Pseudomonas fluorescens WH6] Length = 453 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 56/207 (27%), Gaps = 9/207 (4%) Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 V + GM TI+ L + + +LL QV + Sbjct: 200 KVRVPGMASTIEAL-----LVSEHKGPLADSSLGVIAYTDTNSLLIKGKPAQVKFIEQLV 254 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263 + I + S K D K + + + L+ + AL Sbjct: 255 AQLDTPKRAIEVSLWLVDVSRDDMKKL--DLARKKKTSASNAHILEPLEDKQLMEQITAL 312 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323 ER R + P + A F +S YG + P + Sbjct: 313 ERRRRARVVTLPVILTQENVPAVFEDNHTFYLP--ASDNDPADWKPVPYGAQVSVLPRIA 370 Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPS 350 +I + I+ E V V P+ Sbjct: 371 EANQIEMLIKVEDGRQVREVGRRGKPT 397 >gi|288959939|ref|YP_003450279.1| hypothetical protein AZL_a02040 [Azospirillum sp. B510] gi|288912247|dbj|BAI73735.1| hypothetical protein AZL_a02040 [Azospirillum sp. B510] Length = 512 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 92/318 (28%), Gaps = 45/318 (14%) Query: 99 VILIGHDGKQMLN----LDILIERDIAHLEMTLRRF--IADSNIRVEMVSDTVVLHGMVR 152 V+ +G L+ + ++ A ++ + + ++I + VV Sbjct: 154 VVAWWQNGTLFLSNRDRFAFTVPQNQAVIDSVMTDLKTLGATDITQSLRGGQVVFS---A 210 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL-LNIAGEDQVTLKVTIAEVRRDILK 211 + + ++ ++ + RN V++L L + R Sbjct: 211 SPTVYREVIQ---PYIDRLHRNMAMVRIQLAVVSLGLTDQSASGFDWNALALQFNRLQSG 267 Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 T + + +A V+ ++ GV F+ + L + T Sbjct: 268 TTTTTTGTTTVNGTVGGTLSAAQPPLSVNISNPGTLLGVSGVFNVAGAISFLSKFGNTDT 327 Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSST-----------------------GATSVT 308 + +SG + SG Y T T G+ Sbjct: 328 RQNVEVHTLSGAEVTLRSGQTIPYVTGVGVTAVGGLGTTTAATGNAALNSPGVVGSAQTG 387 Query: 309 THDYGVVLHFTPTVLSPGRI---------GLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 T G+ + TP + +I I+ V P + + + Sbjct: 388 TVQTGLTIKLTPHFDADNQIVTIDLNLLLNNLIEFRDLNAGNQVGILTQPVTQEQALNDI 447 Query: 360 VELPSGGTIVLAGLLKDD 377 V + +G T+VL GL D Sbjct: 448 VRVVAGNTVVLGGLQTDS 465 >gi|121582815|ref|YP_973257.1| lipoprotein [Polaromonas naphthalenivorans CJ2] gi|120596077|gb|ABM39515.1| lipoprotein [Polaromonas naphthalenivorans CJ2] Length = 540 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 71/238 (29%), Gaps = 37/238 (15%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 V ++ ++ + S + A + G +V ++ AL Sbjct: 306 VSDKDNREFSLDWNLVYGALNVSSASRAPTTLAPDTAGAFGAVANTGRFAGSGLLVKALS 365 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATSVTT--------HDY 312 + L+ +G S Y + ++ GA + T Sbjct: 366 EQGLMVQQRSFPLSTQNGSPVSIGLPTIFDYVSEVTLTQTNAGAVNSQTAPSVKQKEEKI 425 Query: 313 GVVLHFTPTVLSPGRIGLRIQ----TEVSEPVIGVNAGDMPSYRVRKAD-------TTVE 361 G L TP G++ + T V P G+ + + R D T V Sbjct: 426 GTYLTITPEAQDDGQVIISANFQDRTGVLTPYTVQAGGNSSTIQQRNIDEVSNIVRTVVR 485 Query: 362 LPSGGTIVLAGLLK----DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415 + G V+ GL + ++L +G P+L L + + + + T Sbjct: 486 V--GVPTVIGGLSETVDNSKDRRLVDGAPIL--------LGGSDSLKKNRRSMILVVT 533 >gi|281356847|ref|ZP_06243337.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] gi|281316405|gb|EFB00429.1| type II and III secretion system protein [Victivallis vadensis ATCC BAA-548] Length = 478 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 88/269 (32%), Gaps = 45/269 (16%) Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------PSKSFAADFGGKFVSEGGD 244 Q+T T+ EVR L+ IG ++ + G +F GG + Sbjct: 188 RPAPQITFNFTLYEVRESTLRDIGIEYLAWKNGPGLNIFSVGWDAFGLTSGGTAAMQAMS 247 Query: 245 FSVKGVLDRFSFET-VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-SST 302 + G L F+ + L+++ ++T + + S ++ ++ S Sbjct: 248 GPLGGFLFAPQFDASFIRLLQQSGKAEIKNSASITVSNSDTQSSELYFNPQFENITKSDN 307 Query: 303 GATSVTTHDYGVV-------LHF-TPTVLS----------------------------PG 326 TSV G+ L P V PG Sbjct: 308 DKTSVGVGTLGLTPGLNQLYLKIIQPIVNLHYGLPQDGYPAAEEFSMNVYKPGAYAKYPG 367 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 + + + V N G + T+ + TI LA +D + G+P Sbjct: 368 TVFFGYDVQAANVVERNNVGAELVETSQIVGNTLIQLNHETI-LAEWNRDQEVEQTIGVP 426 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAAT 415 L IPIL LF + + E+T +++ T Sbjct: 427 FLMDIPILKYLFSTTTTSTEKTRFYLSVT 455 >gi|167042441|gb|ABZ07167.1| putative bacterial type II/III secretion system short domain protein [uncultured marine microorganism HF4000_ANIW133B20] Length = 285 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 13/112 (11%) Query: 277 LTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LT + G+ A G + T + ++ HD P + Sbjct: 160 LTVMDGERAFIQVGQSVPFTQQWVLLTSQYANIQQTIEFHDVTTGFAVRPRYIGD----- 214 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 +++ E++ + +NA + + TTV P G + + G++++ + + Sbjct: 215 QVEVEITPRISRINARGFIDFE--QLSTTVRAPRGEWLDIGGIMQNHDEVSR 264 >gi|91775192|ref|YP_544948.1| NolW-like protein [Methylobacillus flagellatus KT] gi|91775336|ref|YP_545092.1| NolW-like protein [Methylobacillus flagellatus KT] gi|91709179|gb|ABE49107.1| NolW-like protein [Methylobacillus flagellatus KT] gi|91709323|gb|ABE49251.1| NolW-like protein [Methylobacillus flagellatus KT] Length = 264 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 13/112 (11%) Query: 277 LTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 LT + G+ A G + T + ++ HD P + Sbjct: 139 LTVMDGERAFIQVGQSVPFTQQWVLLTSQYANIQQTIEFHDVTTGFAVRPRYIGD----- 193 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 +++ E++ + +NA + + TTV P G + + G++++ + + Sbjct: 194 QVEVEITPRISRINARGFIDFE--QLSTTVRAPRGEWLDIGGIMQNHDEVSR 243 >gi|294778205|ref|ZP_06743632.1| TonB-dependent receptor plug domain protein [Bacteroides vulgatus PC510] gi|294447942|gb|EFG16515.1| TonB-dependent receptor plug domain protein [Bacteroides vulgatus PC510] Length = 1056 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 52/314 (16%), Positives = 107/314 (34%), Gaps = 43/314 (13%) Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 V++P ADV + + G ++ G+ ++ ++++ L Sbjct: 5 AVANPGVADVKIT---------QQSGTCTGVVKDATGETVIGASVVVKGTTNGTITGLDG 55 Query: 130 FIADSNIR---------VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 + SN++ V ++ V+ +G + L E + G + N Sbjct: 56 DFSLSNVKKGDIIQISFVGYITQEVLWNGTPLNVILKDDTQTLDEVVVVAFGTQKKVN-- 113 Query: 181 SKKVMNLLNIAGEDQVTLK--VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 V ++ G ++ + + E + ++ + S G S +K F G Sbjct: 114 ---VTGAVSTVGAKEIAARPVSSTVEALQGVVPGMNISTSSDGGSLKGNKEFNIRGTGTI 170 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERAT--AIRTLAEPTLTAISGQSASFTSGGQHLYK 296 G SV ++ E ++A+ I L + ++I G A GG L Sbjct: 171 ---GKGSSVSPLVLIDGMEGDINAINPQDIENISVLKDAAASSIYGSRAP---GGVILIT 224 Query: 297 TVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353 T +G S+ ++ + L+ P + L I ++ N G P Y Sbjct: 225 TKKGKSGKPSINYNNNFRFNSPLNM-PHMADSYSFALAINDQL------TNGGQSPMYSE 277 Query: 354 RKADTTVELPSGGT 367 +K ++ G + Sbjct: 278 KKLQQILDYQHGKS 291 >gi|121726048|ref|ZP_01679347.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae V52] gi|121631530|gb|EAX63900.1| toxin co-regulated pilus biosynthesis outer membrane protein C [Vibrio cholerae V52] Length = 250 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 17/218 (7%) Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 + L + Q+ + + + + L Q+ + I + S D G Sbjct: 4 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVD-AISLSQVG 62 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASFTSGGQHLYKTVSS 300 G + V++ L + + E I + T+ +++ ++ Sbjct: 63 GGLGASYRSASARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETT 118 Query: 301 STGATSVTTHDY-------GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351 T T G + P +L GRI + + + +P+ Sbjct: 119 KDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTV 178 Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389 ++ TV + G + LA L KD+ Q G+ LL Sbjct: 179 DENESMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 215 >gi|171913479|ref|ZP_02928949.1| probable penicillin resistance regulatory protein [Verrucomicrobium spinosum DSM 4136] Length = 768 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 70/230 (30%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV ++ I EV +Q S D+G + S+ G V+G+L + Sbjct: 510 QQVLIRSFILEV-----EQGWLPWS--------------DYGLQEPSKDG-LQVQGILSK 549 Query: 254 FSFETVLHALERATAIRTL-AEPTLTAISGQSASFTSGGQHLYKT----------VSSST 302 + +L ++ ++++L A P++ SGQ + +Y T ++ Sbjct: 550 EQGQKLLTHVQSDKSVQSLTAAPSVATRSGQRTHVDMVREFIYPTEFDPPQLAQPPTTKD 609 Query: 303 GA---------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--------- 338 G T+ G+ + F P V + + E+++ Sbjct: 610 GKPIPGLGNLPIFPTTPTAFEMRPVGLRMEFDPVVQPGNVHRIELYWEITDFLGFMNYGN 669 Query: 339 ---------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 +I N P + K T+ G +V+ G+ Sbjct: 670 PIKAQVKDQNGKEKELLISENKIQQPIFETLKLTTSFSARDGEYVVIGGI 719 >gi|196231382|ref|ZP_03130241.1| hypothetical protein CfE428DRAFT_3406 [Chthoniobacter flavus Ellin428] gi|196224718|gb|EDY19229.1| hypothetical protein CfE428DRAFT_3406 [Chthoniobacter flavus Ellin428] Length = 267 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 39/154 (25%) Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH-------------------LYKT 297 T + + + + P +T +GQ A + + Sbjct: 90 NTRIQQMLAKGTAKLIGWPIMTTHTGQRAVIEAIKEIRWATEYHPPTLNVSEVPADPPAK 149 Query: 298 VSSSTGATS-------VTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPV--------- 340 V+ S ++ T + GV L P + G+ I L I + Sbjct: 150 VTPSVDVSTLEAFPTAFETRNAGVTLEVEPVIAPDGKTIDLNIVPQHVRLTGFKKVTIEG 209 Query: 341 ---IGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 G + P + K T+ L +G +++ Sbjct: 210 AAHKGKTIVEQPEFNTNKVTTSRRLKNGERVLMG 243 >gi|318606999|emb|CBY28497.1| general secretion pathway protein D [Yersinia enterocolitica subsp. palearctica Y11] Length = 93 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 19/35 (54%) Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 IP +G LFR S+ E++ + + P +++ + Sbjct: 2 GDIPFIGGLFRQSKEKIEKSNLILFIRPTILRETS 36 >gi|228471921|ref|ZP_04056691.1| hypothetical protein CAPGI0001_0005 [Capnocytophaga gingivalis ATCC 33624] gi|228276773|gb|EEK15479.1| hypothetical protein CAPGI0001_0005 [Capnocytophaga gingivalis ATCC 33624] Length = 386 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 68/214 (31%), Gaps = 31/214 (14%) Query: 1 MRYLQRTFFTMMSIFLFSSNPS------VAKLPPIKEANAAVINISDVEIGKGKKISIGL 54 M+Y + F ++I L + S V P N S+ + K + Sbjct: 1 MKYFFKISFMALAIGLLTIGCSKKGDDEVTPNPKNPSNPTNPSNPSNPPVASSLKFT-PE 59 Query: 55 NKVIILQVPVDV---------QDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGH 104 N + ++ V V + + A + + + GK G V ++ Sbjct: 60 NPSVEVEKTTTVGIVGTWNTTDKVKIDNEEVATLQGAVQDNKLTVLGKKAGTTKVHILSA 119 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 D K+ + ++ + L F + + E + T+ G V D + V Sbjct: 120 DNKERGSFELTVSP------KLLLSFTPEKAVVKEGETTTITFSG-VWNATDRVQIV--- 169 Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + N + K+ L AG +V + Sbjct: 170 ----NGEIAQLQGNVTDNKITLLAKKAGTTKVEI 199 Score = 44.6 bits (104), Expect = 0.032, Method: Composition-based stats. Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 1/75 (1%) Query: 67 QDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 V + + A + + + L K G V + D + + ++ + + L++ Sbjct: 164 DRVQIVNGEIAQLQGNVTDNKITLLAKKAGTTKVEIFTQDNRSRGSFEVSVYTTASTLKL 223 Query: 126 TLRRFIADSNIRVEM 140 + + + Sbjct: 224 PHKNPLPHYRTDITN 238 >gi|77165572|ref|YP_344097.1| NolW-like [Nitrosococcus oceani ATCC 19707] gi|254434892|ref|ZP_05048400.1| Bacterial type II/III secretion system short domain protein [Nitrosococcus oceani AFC27] gi|76883886|gb|ABA58567.1| NolW-like protein [Nitrosococcus oceani ATCC 19707] gi|207091225|gb|EDZ68496.1| Bacterial type II/III secretion system short domain protein [Nitrosococcus oceani AFC27] Length = 287 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 42/145 (28%), Gaps = 23/145 (15%) Query: 274 EPTLTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + + GQ+AS +G SV D P + Sbjct: 154 TQQVRVMEGQAASIRTGHSIPLANRAWLLPGGRLLTQNSVYYRDVVSGFEVLPHIH-GDE 212 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L I+ + P ++K T V +P G + L G + QQ Sbjct: 213 VTLDIRPYQANPSRQGGGR----IAIQKLATQVSVPLGRWLELGGADGNRQQQ------- 261 Query: 388 LSKIPILGALFRNSRFNREETEIFI 412 LG + N E IFI Sbjct: 262 -----GLGTFYGTHSRNEELRHIFI 281 >gi|221215376|ref|ZP_03588341.1| putative component of type II secretion apparatus [Burkholderia multivorans CGD1] gi|221164808|gb|EED97289.1| putative component of type II secretion apparatus [Burkholderia multivorans CGD1] Length = 550 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 85/257 (33%), Gaps = 26/257 (10%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEG 242 + LN + + + V++ EV + G S+ SS SF+ K Sbjct: 298 IKELNASFSKSIAIDVSVYEVHLSNNENYGANLSLAYKSSSGHTGVSFSGASVPKVSGAA 357 Query: 243 GDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 S+ + + AL + + + + +G++ + + Y + Sbjct: 358 SAMSLGATILSGPMAGSTAAVQALSALGNVSQVVQRSGMTQNGKALNLQAATDQDYVNQT 417 Query: 300 SSTGATSVTTHDYGVVLHFTPTVL-------SPGRIGLRIQTEVSE----------PVIG 342 ST A +V TP GRI + +S P Sbjct: 418 QSTLAANVGATSGIQTATVTPGFTGSFLPRYRDGRIFVVFDMTLSNLTALEPYPPNPKTD 477 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 + + + + + +V L G ++V+ G+ + K G+ P+LG Sbjct: 478 QASVQLRTLQKSRFQQSVSLKPGDSLVITGMYQQTASVNKNGV-GSPSFPLLG---GGID 533 Query: 403 FNREETEIFIAATPFLV 419 +++T + I + ++ Sbjct: 534 AQKKDTILAIVISARVL 550 >gi|297539539|ref|YP_003675308.1| NolW domain-containing protein [Methylotenera sp. 301] gi|297258886|gb|ADI30731.1| NolW domain protein [Methylotenera sp. 301] Length = 284 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 69/227 (30%), Gaps = 18/227 (7%) Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223 +E L ++ ++ + N L I + +++ D+ +Q IT S Sbjct: 47 AEDILPIIQPLVGSDGTATGMQNHLIIRASPEKMIEIEQIISTLDVERQ---NLRITVSH 103 Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT--LTAIS 281 ++ + G+ ++ + + + + + Sbjct: 104 QNNLQTNNDNVAVSGRKRIGNVTIGTNKYPRNAADGVQLDIENNQSSIRSNGNQFINVMD 163 Query: 282 GQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 G+ A G Y T ++ + D P IG +++ E Sbjct: 164 GERAFIRVGRSVPYTQEWVTLTQRYTSIQRTTEFADISTGFSVRPR-----SIGNQVELE 218 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 ++ + +N + + T V + G + L G ++ + + Sbjct: 219 ITPRIAQLNQNKYIDFE--ELSTIVRVNRGEWLDLGGTMQQKDEVSR 263 >gi|120611389|ref|YP_971067.1| Type II secretory pathway component PulD-like protein [Acidovorax citrulli AAC00-1] gi|120589853|gb|ABM33293.1| Type II secretory pathway component PulD-like protein [Acidovorax citrulli AAC00-1] Length = 566 Score = 50.0 bits (118), Expect = 9e-04, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 65/208 (31%), Gaps = 19/208 (9%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 +++ +N + + VTI V + G + + A + G Sbjct: 318 LLHSINQRFARNLLIDVTIYNVSMTKEETAGVSMDLVYRRLNGNGVGVAGAAPLQPANGQ 377 Query: 244 DFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298 + + V AL+ + + AI+GQ + F Y T Sbjct: 378 PGRITLSFSDPASRLAGSRMVAEALQSVGNVALYKKGQFMAINGQPSPFQVVDDEEYNTS 437 Query: 299 SSSTGATSVTTH--------DYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVN 344 S+T +V T G+ + P +L RI L+ Q E+S V+ Sbjct: 438 VSATQTANVGTQLATQKAVLTTGLTGNVLPLILGDNRILLQYQMEISAVSNMNPAVVNGI 497 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAG 372 P + L G IVL G Sbjct: 498 LTYSPKRSRQSFQQQAFLKDGDAIVLFG 525 >gi|317133812|ref|YP_004089723.1| Ig domain protein group 2 domain protein [Ruminococcus albus 7] gi|315450274|gb|ADU23837.1| Ig domain protein group 2 domain protein [Ruminococcus albus 7] Length = 467 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 23/180 (12%) Query: 41 DVEIGKGKKISIGLNKVIILQVPVDVQD--VLVSDPTKADVV--VHSPRTMYLFGKNVGQ 96 ++ G+ +S+ L L + + VLV D AD +P + + GK G Sbjct: 208 ELTYGESDTVSVTL-----LPFDAENKRLTVLVGDTDIADYEFDQTNPNGIIVTGKKAGT 262 Query: 97 ANVILIGH------DGKQMLNLDILIERDIAHLE------MTLRRFIADSNIRVEMVSDT 144 + G D L + + + + + + D Sbjct: 263 TTITFTGDSWTDTIDDDISAVLTVTVNKADSTVTVAPTANELTYTGSGQDLVAKGETEDG 322 Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204 +++ + + + A SE + Y KV+ N + V++KVTIAE Sbjct: 323 TIVYAIGESADTAPNADAFSENIPGGTEAGDY--YVWYKVIGDENHNDSEPVSVKVTIAE 380 >gi|253997315|ref|YP_003049379.1| NolW domain-containing protein [Methylotenera mobilis JLW8] gi|253983994|gb|ACT48852.1| NolW domain protein [Methylotenera mobilis JLW8] Length = 282 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 66/229 (28%), Gaps = 18/229 (7%) Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 +E L + ++ + N L + + + +V E L +I+ Sbjct: 43 RFAEEVLPTIQAVIGDHGTASAIQNQLIVRTDSRTMAEV---EQTISTLDTARENFTISV 99 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--ETVLHALERATAIRTLAEPTLTA 279 S + + + G+ +++ D + + T + ++ + Sbjct: 100 KRQNISSGSNRNSTIRGRTRIGNATIQTGNDARGGRDGIQIGIEDNQTNAQQSSQQFIRV 159 Query: 280 ISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 G A + G Y T + S D G +I L I Sbjct: 160 TDGAPAYISVGESIPYTNEWVVLTRRYAVRQVSTQFVDIGTGFTVRAR-SIGSQIELEIT 218 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 S + +TV + G + + G+++D + + Sbjct: 219 PTFSRLQQDG------RIEFEQLSSTVRVQRGEWVNIGGIMQDKDEVSR 261 >gi|8896027|gb|AAF81210.1|AF247502_5 PilNb [Salmonella enterica subsp. enterica serovar Dublin] gi|7274591|gb|AAF44784.1| PilNb [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|32454459|gb|AAP83031.1| PilNb [Salmonella enterica subsp. enterica serovar Paratyphi C] Length = 129 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 12/115 (10%) Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPS 364 G + P + G + L++ +S+P G + +MP ++R L + Sbjct: 15 GFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKDGNSYIEMPYTKLRSLSQKTNLRA 74 Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 G +VL G + + + K G +LG + + + I TP L+ Sbjct: 75 GQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGRDGDDSRSTLVIIITPELM 125 >gi|197336519|ref|YP_002157477.1| lipoprotein, putative [Vibrio fischeri MJ11] gi|197315222|gb|ACH64670.1| lipoprotein, putative [Vibrio fischeri MJ11] Length = 540 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 103/284 (36%), Gaps = 31/284 (10%) Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT---LKVTIAEVRRDILKQIGF 215 R+ L+ ++ + ++ K+V N ++ +T ++ + E+ ++ + Sbjct: 265 RSGSLALNKFDRTVTVKDTPNNVKRVGNFIDELNYTALTPYSIQADVYEIIWEVNDEKQV 324 Query: 216 QH-----SITGSSSGPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERAT 267 S + + + S + +D G ++ GGDF ++ +F E Sbjct: 325 SWTAAFESASFALNAMSPTVVSDSGLGSITATKIGGDFDGSNIIGKFLNENASVYSRITN 384 Query: 268 AIRTLAE-PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 +I+T PT S A SG + + + +T+ + G + P + S G Sbjct: 385 SIKTKNNIPTQLISSQDRA-IVSGREVTIDSNGFAQQSTNTKLINEGFNITTRPRLTSDG 443 Query: 327 RIGLRIQTEV----SEPVIGVNAGDMPSYRVRKADTT--VELPSGGTIVLA----GLLKD 376 +I + + G + ++ T + + SG ++VL L + Sbjct: 444 KIDMEVIVNTKSIGDIKTFGSEEDMVQLEETKQHGTISGIPIRSGESVVLNAYERDLTRA 503 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 D+ L++ +P R ++ + + P +++ Sbjct: 504 DLASLEKNLPW--------WTGGGKSNKRYKSSLIVMVKPVIME 539 >gi|8896026|gb|AAF81209.1|AF247502_4 PilNa [Salmonella enterica subsp. enterica serovar Dublin] gi|7274588|gb|AAF14814.2| PilNa [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|32454458|gb|AAP83030.1| PilNa [Salmonella enterica subsp. enterica serovar Paratyphi C] Length = 277 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 6/130 (4%) Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 + N QV L V + V +Q+G +I S + + + G + Sbjct: 122 YVEQQNRQMNRQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNATS 181 Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 D + ++ AL + + + Q +Y Sbjct: 182 ASVSILDSATGSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVA 241 Query: 298 VSSSTGATSV 307 SS+T T V Sbjct: 242 QSSTTTTTDV 251 >gi|300113671|ref|YP_003760246.1| NolW domain-containing protein [Nitrosococcus watsonii C-113] gi|299539608|gb|ADJ27925.1| NolW domain protein [Nitrosococcus watsonii C-113] Length = 287 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 41/145 (28%), Gaps = 23/145 (15%) Query: 274 EPTLTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 + + GQ+A +G SV HD P + Sbjct: 154 TQQVRVMEGQTARVQAGHSIPMTNRAWLLPGGGLLTQNSVYYHDVVSGFEVLPRIHGD-E 212 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + L I+ + P ++K T V +P G + L G + QQ Sbjct: 213 VTLDIRPYQANPSRQGGGR----IAIQKLATQVSVPLGRWLELGGADGNRQQQ------- 261 Query: 388 LSKIPILGALFRNSRFNREETEIFI 412 LG + + E FI Sbjct: 262 -----GLGTFYGTHSRSEELRHFFI 281 >gi|168698533|ref|ZP_02730810.1| hypothetical protein GobsU_03369 [Gemmata obscuriglobus UQM 2246] Length = 635 Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 19/150 (12%) Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295 G G V + L A + L+ P + Q+ G + Sbjct: 447 GLTTERGTSGCVLTPREAERLNDFLRAAKEKGECEVLSRPLVQVADNQTGYVQIGQNYPV 506 Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIG------VNAGDM 348 V + G L TP + S G+ + L + + + + G V Sbjct: 507 ALAGGK-----VESKFAGTALRVTPCLASDGQTVKLTTEVQNGKVIPGTVMTAFVPGTTF 561 Query: 349 PSYR-------VRKADTTVELPSGGTIVLA 371 P V++ V +P+G T V+A Sbjct: 562 PVTTLMPATVCVQEVRANVAVPAGHTAVVA 591 >gi|254513511|ref|ZP_05125576.1| hypothetical protein RKLH11_4189 [Rhodobacteraceae bacterium KLH11] gi|221532515|gb|EEE35511.1| hypothetical protein RKLH11_4189 [Rhodobacteraceae bacterium KLH11] Length = 496 Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 92/261 (35%), Gaps = 33/261 (12%) Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV--TIAEVRRDI 209 R IQ+ +L + A + K M +++ G V + I + + Sbjct: 208 RDIQEHDAWADLERQL--DAVTPPPAQVTYAKSMGRVSVFGPPSVQARAAQVITDFQEVY 265 Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFV-----------SEGGDFSVKGVLDRFSFET 258 +IG + ++ + S +FA G + G ++ +F++ Sbjct: 266 STRIGIEIAVYFIDTSKSDTFAVGLEGSGTHGAIAGAIGAITGNGIATIANDFGSINFQS 325 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTT--H 310 L +++ + A SG A + Y + +++T +TSV T Sbjct: 326 ----LAENSSVVDYRLTSTIAQSGTIAPISLPRSQNYVSKTTTTPDSNGNVSTSVETATI 381 Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPS 364 D G+ +H P ++ RI L + ++ G + +P R L Sbjct: 382 DTGISIHALPRLVQNNRIHLSLTLIQNDLTELESFESGGSTVQLPKVDQRMILNDNILAP 441 Query: 365 GGTIVLAGLLKDDIQQLKEGI 385 G T+V +G +D + G+ Sbjct: 442 GETLVFSGYEQDKATRSNTGV 462 >gi|322834629|ref|YP_004214656.1| type II and III secretion system protein [Rahnella sp. Y9602] gi|321169830|gb|ADW75529.1| type II and III secretion system protein [Rahnella sp. Y9602] Length = 482 Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 11/165 (6%) Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277 + S S D + GG G S + L+AL T + L + Sbjct: 274 GLNMSYIDGGSSVVIDTSMMDMLGGGMTVAGGADRALSIDAKLNALYSLTGSKVLQSGSF 333 Query: 278 TAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDY----GVVLHFTPTVLSPGRI 328 + Y TV+ +G V G TP V++ GR+ Sbjct: 334 VTRNNTPIPLNMTNSQHYVSGRTRTVNKDSGDEDVEIETAEIITGTSFIITPRVMTDGRV 393 Query: 329 GLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 + + + +P+ + + + G +++A Sbjct: 394 EVTSGFTKSQLNSIDVFDTVQLPNVTTTEMFNSTAVNPGSLLMVA 438 >gi|167620934|ref|ZP_02389565.1| Type II secretory pathway, component PulD [Burkholderia thailandensis Bt4] Length = 63 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ T L G +VL GL++D + G L + +++ TE+ Sbjct: 2 NTRQLQTVTRLKDGEVVVLGGLIQDRNTSARSGYAWLP------SFLDGRSSSKQRTEVL 55 Query: 412 IAA 414 + Sbjct: 56 LVL 58 >gi|325274962|ref|ZP_08140964.1| PilN family type IV pilus biogenesis protein [Pseudomonas sp. TJI-51] gi|324099903|gb|EGB97747.1| PilN family type IV pilus biogenesis protein [Pseudomonas sp. TJI-51] Length = 120 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 12/117 (10%) Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVEL 362 T G ++ P V+ + LR +S + G N ++P R V+L Sbjct: 7 TVTSGFNMNLLPYVMPGKELLLRYSINLSALKQIRQVSSGDNTIEIPEVDNRIFSQMVKL 66 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS-RFNREETEIFIAATPFL 418 SG T+VL+G + K G+ S L S + + + I + TP + Sbjct: 67 RSGETLVLSGFEQSVDNGSKAGVGSASN-----WLMGGSLKRDNSKDVIVVLITPIV 118 >gi|229084241|ref|ZP_04216524.1| hypothetical protein bcere0022_8840 [Bacillus cereus Rock3-44] gi|228699041|gb|EEL51743.1| hypothetical protein bcere0022_8840 [Bacillus cereus Rock3-44] Length = 852 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 S+ ADV + + GK +G+ + I DGK++ N +I + + L Sbjct: 303 SNKDIADVETI-DGKVKVIGKGIGKTTIQAISEDGKKVTNAEITVTNSLDVTRDGL 357 >gi|87308242|ref|ZP_01090383.1| hypothetical protein DSM3645_11766 [Blastopirellula marina DSM 3645] gi|87288799|gb|EAQ80692.1| hypothetical protein DSM3645_11766 [Blastopirellula marina DSM 3645] Length = 553 Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 20/137 (14%) Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------STGATS 306 S + +L LE + LT ++G G + T S AT+ Sbjct: 379 MSADEMLEMLEDKKQYELIDSFDLTTVTGHETKVQQGRRQPVVTGSQMIPQRGPDGRATA 438 Query: 307 VTT-----HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------GVNAGDMPSYRVR 354 + + G +L +P +L R L++ E S+ PS Sbjct: 439 MQRNQYNLQNVGTMLTVSPEML-GNRASLKLAFERSDVADPKEDKAEDDANDSPPSITTL 497 Query: 355 KADTTVELPSGGTIVLA 371 +T + L G +L+ Sbjct: 498 IINTQLLLEDGQATILS 514 >gi|213421917|ref|ZP_03354983.1| putative outer membrane secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 213 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 5/96 (5%) Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238 + +K++ L+ + + + V I +V + Q+G S G +F Sbjct: 123 AGYRKLITELDQR-QQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN--- 178 Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 G + D +F L+ALE+++ L++ Sbjct: 179 -DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQ 213 >gi|220934554|ref|YP_002513453.1| hypothetical protein Tgr7_1381 [Thioalkalivibrio sp. HL-EbGR7] gi|219995864|gb|ACL72466.1| hypothetical protein Tgr7_1381 [Thioalkalivibrio sp. HL-EbGR7] Length = 293 Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 8/103 (7%) Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329 E + GQ A G +++ T V TP ++ GR+ Sbjct: 161 EQWVRVQEGQQAHIREGEVIPMASIAYLRRDGTLVGGVDYQGLDRGFVVTPHLMPDGRVR 220 Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 L I R +T V + +G + L G Sbjct: 221 LHIVQIAERESPAGGGR----IETRGLETVVTIETGEWVDLGG 259 >gi|187921869|ref|YP_001893458.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN] gi|187720307|gb|ACD21529.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN] Length = 598 Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 87/274 (31%), Gaps = 32/274 (11%) Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKS 229 + A ++ ++N V+ + + ++ R Q+G +T + + Sbjct: 317 TDTKDAVDRAEGIINFHRALLNKLVSYHIRVVQITRSNAGQLGVDWQALLTKALNNVPGF 376 Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSAS 286 + ++ S+ + F V++A+ + + + + + S Sbjct: 377 IISSTSPLTLTTAAAGSLTTKITSGQFSGTQAVVNAIAQLGYTVSTDDIPMQVQNRHSGY 436 Query: 287 FTSGGQHLYKTVSSSTGATSVTTH----------DYGVVLHFTPTVLSPGRIGLRIQTEV 336 + + Q Y + ++ +T T G+ TV I + + + Sbjct: 437 YDNVNQFSYVSQTTPAASTVGGTGGTPGITTSMDSVGLKFLIYGTVTDDNNISISVSMDN 496 Query: 337 S---------EPVIGVNAGDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 S G N + K A T + +GG IVLA + +Q + Sbjct: 497 SALNGPIQTFTSGQGANQQSVQEVDKNKYGASTDGIVRNGGIIVLAAHDRTQLQSQRSA- 555 Query: 386 PLLS-KIPILGALFRNSRFNREETEIFIAATPFL 418 L KIP+L + + T + + Sbjct: 556 --LGYKIPMLAG--GSVNDSDSRTTTLFVISASI 585 >gi|330862440|emb|CBX72598.1| hypothetical protein YEW_HP33930 [Yersinia enterocolitica W22703] Length = 347 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 6/128 (4%) Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVT 197 + + L G + A S + + ++ +L+ + Q+ Sbjct: 210 SAGNHLPLAGEKESEDAPVSAPLFSADPRQNAVIIRDRQANMPLYSSLITQLDQRPVQIE 269 Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 + VTI +V + Q+G S + S G SF + D + + +F Sbjct: 270 ISVTIIDVDAGDISQLGIDWSASTSIGGAGVSFNSGEAAPH----SDGFSTVIGNTGNFM 325 Query: 258 TVLHALER 265 L+AL+R Sbjct: 326 VRLNALQR 333 >gi|257486850|ref|ZP_05640891.1| type II and III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 102 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 10/104 (9%) Query: 321 TVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 ++ + L + +S ++ +P+Y + V+L SG T++L+G Sbjct: 1 RLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF- 59 Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 +++ + I P L + ++ + + TP + Sbjct: 60 -EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPIV 100 >gi|326336569|ref|ZP_08202738.1| hypothetical protein HMPREF9071_2204 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691234|gb|EGD33204.1| hypothetical protein HMPREF9071_2204 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 607 Score = 45.8 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 72/202 (35%), Gaps = 17/202 (8%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67 MS+ + S S ++ ++VE+GK ++I + Sbjct: 1 MALAMSLLIISCKKSEKEVEAPPTQLKFTPERTEVEVGKTATVTI-------VGTWNKTD 53 Query: 68 DVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 V +++ + + L K VG V ++ DG+ N ++ + Sbjct: 54 KVQIANKEIITQQGEVTDNKINLLAKKVGTTKVNVLTADGRNRGNFEVTVTP-----TSE 108 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRT---IQDSQRAVELSETFLSQSGRNQYANSSSKK 183 L + + + TV + G T +Q + + + + ++ + N A Sbjct: 109 LHFTPKKPEVEIGKAT-TVTIVGTWNTTDKVQIADKEIVTQQGEVTDNKINLLAKKVGTT 167 Query: 184 VMNLLNIAGEDQVTLKVTIAEV 205 +++L G ++ + ++T+ + Sbjct: 168 KVSVLTADGRNRGSFEITVTPI 189 Score = 43.5 bits (101), Expect = 0.069, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 4/77 (5%) Query: 46 KGKKISIGLNKVIILQVPV---DVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVIL 101 + +SI K I+ + V ++D A + + + L K VG V + Sbjct: 278 SPESVSIEEGKTTIVTITGVWNTTDRVQITDGEVAALQGEVTDNKITLLAKKVGATKVEV 337 Query: 102 IGHDGKQMLNLDILIER 118 +G+ + ++ + Sbjct: 338 FTKEGQSRGSFEVTVTP 354 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 30/84 (35%), Gaps = 1/84 (1%) Query: 57 VIILQVPVDVQDVLVSDPTKADVVV-HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 V I+ V + +++ ++ + + L K VG V + D + + ++ Sbjct: 375 VTIIGVWNTTDRIQIANNEIVELKGGVTNNKITLLAKKVGNTKVEIFTADNRSRGSFEVS 434 Query: 116 IERDIAHLEMTLRRFIADSNIRVE 139 + L++ + I + Sbjct: 435 VYTLANTLKLAYKADIPHYKTGIT 458 Score = 37.3 bits (85), Expect = 5.5, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 10/120 (8%) Query: 67 QDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 V V + + + + L K VG V + +G + + +++ Sbjct: 219 DKVKVENTEIVEQQGEVTNNKITLLAKKVGDTKVEIFTANGHKRGSFQVIVTP------- 271 Query: 126 TLRRFIADSNIRVEMVSDTVV-LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 L + ++ +E T+V + G V D + + L + +KKV Sbjct: 272 KLLLSFSPESVSIEEGKTTIVTITG-VWNTTDRVQITDGEVAALQGEVTDNKITLLAKKV 330 >gi|325274960|ref|ZP_08140963.1| type IVB pilus formation outer membrane protein [Pseudomonas sp. TJI-51] gi|324099907|gb|EGB97750.1| type IVB pilus formation outer membrane protein [Pseudomonas sp. TJI-51] Length = 427 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 3/108 (2%) Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 +N N QV L V + V +G ++ ++ + + Sbjct: 315 LNGENSNITKQVLLNVKVLSVTLTDKDDLGIDWNLVYTAVNGKWGIGWKNVTQADAAAVQ 374 Query: 245 FSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 SV + + ++ AL + + T+ P++T ++ Q Sbjct: 375 GSVSILDTSSQWAGSNLLVKALAQQGRVSTITSPSVTTLNLQPVPVQV 422 >gi|327540297|gb|EGF26883.1| hypothetical protein RBWH47_03922 [Rhodopirellula baltica WH47] Length = 593 Score = 45.4 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 14/159 (8%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80 P+ + + ++ + I N V L V ++ V V D + A V+ Sbjct: 421 PAALASHRGEFHRSVPATEAERSLRIEDTIQCDANDVTSLTVDGVIEAVRVEDDSIARVI 480 Query: 81 VHSPRTMYLFGKNVGQANVILIG------HDGKQMLNLDILIERDIAH--------LEMT 126 + R + L G G+ V++ +++ L I ++ L Sbjct: 481 GSTSRHLRLIGVRPGKTRVLVQQKLAGDAESIREIYELHITSPSNVRGGESQQEQSLMEL 540 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + +++++ D +++ G +D++ V L Sbjct: 541 IEQKYRTASVQISRQGDRIIVQGECDDSRDAKEIVRLIR 579 >gi|32475170|ref|NP_868164.1| hypothetical protein RB8056 [Rhodopirellula baltica SH 1] gi|32445711|emb|CAD78442.1| hypothetical protein RB8056 [Rhodopirellula baltica SH 1] Length = 593 Score = 45.0 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 14/159 (8%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80 P+ + + ++ + I N V L V ++ V V D + A V+ Sbjct: 421 PAALASHRGEFHRSVPATEAERSLRIEDTIQCDANDVTSLTVDGVIEAVRVEDDSIARVI 480 Query: 81 VHSPRTMYLFGKNVGQANVILIG------HDGKQMLNLDILIERDIAH--------LEMT 126 + R + L G G+ V++ +++ L I ++ L Sbjct: 481 GSTSRHLRLIGVRPGKTRVLVQQKLAGDAESIREIYELHITSPSNVRGGESQQEQSLMEL 540 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165 + + +++++ D +++ G +D++ V L Sbjct: 541 IEQKYRTASVQISRQGDRIIVQGECDDSRDAKEIVRLIR 579 >gi|124262948|ref|YP_001023418.1| pilus (IV) biogenesis [Methylibium petroleiphilum PM1] gi|124262194|gb|ABM97183.1| Pilus (IV) biogenesis [Methylibium petroleiphilum PM1] Length = 460 Score = 45.0 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 48/316 (15%), Positives = 91/316 (28%), Gaps = 53/316 (16%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV------------- 196 V + D A L + R+ Y ++ + + + + Sbjct: 162 EVPNLMDQPAAANLLASLRRLGARDAYLDAIGNTITFEASRSSWQAIDGYLAHMRRSKPM 221 Query: 197 -TLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 +V + +V G S+ + +G +++ GG + G S V Sbjct: 222 LVYEVEVYQVELTDTTNNGIGFTSLAKNLAGDPNNWSVARGGTGI---GSASFAFVGKNV 278 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH---- 310 + V+ L+ + +L+ P + +SG S+ F G Y S S + Sbjct: 279 TMAAVVDLLQTQGTVSSLSRPRVAMLSGSSSKFRVGQTTKYVAKISQQNTGSGSASTTTT 338 Query: 311 --------DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD--MPSYRVRKAD 357 G L + L I + +P R+ + Sbjct: 339 SSADTDELKTGFELQMKGGYQEGSVFTNLKLTISELIRFNDFEAFGTKLRLPDTTEREIE 398 Query: 358 TTVELPSGGTIVLAGLLKDDIQ----QLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413 T V G I+L GL G+ N +EI +A Sbjct: 399 TLVRARPGDLILLGGLGSTKQNAGHEAGITGV--------------NKSTTASRSEIVVA 444 Query: 414 ATPFLVKPVAMRDLSR 429 P ++ A ++ + Sbjct: 445 MRPRVISFTAAKEAQQ 460 >gi|87312053|ref|ZP_01094160.1| hypothetical protein DSM3645_15135 [Blastopirellula marina DSM 3645] gi|87285222|gb|EAQ77149.1| hypothetical protein DSM3645_15135 [Blastopirellula marina DSM 3645] Length = 1719 Score = 45.0 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 76/251 (30%), Gaps = 43/251 (17%) Query: 248 KGVLDRFSFETVLHAL---ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301 + + +F + + ++ L P+L + G S S Sbjct: 1385 GALANDPTFLAAAQLMGGAQPNGVVQNLY-PSLPTNKDEE---RLGFSTPQPNQSGSALQ 1440 Query: 302 --TGATSVTTHDYGVVLHFTPTVLSPGRIGL---------RIQTEVSEPVIGVNAGDMPS 350 S+ + G P + G + I+ V + Sbjct: 1441 DLVPDPSIYKFETGTGFEIRPVIQPDGYSIIYDFNYMYTTNIREPVQADEKHLGRIKRHF 1500 Query: 351 YRVRKADTTVELPSGGTIVLAGLLKD-----DIQQLKEGIPLLSKIPILGALFR--NSRF 403 + ++ EL L+ + +G+PLL IP++G FR S Sbjct: 1501 INTQVQTSSFELR---------LISRYQVALKAARTSQGVPLLQDIPVVGLAFRPLPSDE 1551 Query: 404 NREETEIFI---AATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459 + + + + P L + +R S D +++ DA+ R + + E Sbjct: 1552 SSIQQNVILGQTVVYPTLYDLMGLRWAPSVVDLNHTNARDAEHTVRGRYQSVKNSID--E 1609 Query: 460 VEGQNYKGAIG 470 + + + IG Sbjct: 1610 ISKKRFDDFIG 1620 >gi|254425195|ref|ZP_05038913.1| TonB-dependent siderophore receptor subfamily [Synechococcus sp. PCC 7335] gi|196192684|gb|EDX87648.1| TonB-dependent siderophore receptor subfamily [Synechococcus sp. PCC 7335] Length = 839 Score = 45.0 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 6/196 (3%) Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH---GMVRTIQDSQRAVELSETFLSQSGR 173 R +++ + A +++V +V + +VL GM + + Sbjct: 122 ARADNSIQIAITGTDAPPDVQVGVVGENLVLSVVPGMAPSANAEDAIQLTVIGDQDEGYS 181 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 A+ ++ LL++ QV + IA+ L + ++S P F +D Sbjct: 182 PNSASVGTRTDTLLLDVPASIQVIPEAVIADQGALDLLDVLRNTPGINTNSSPRDIF-SD 240 Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293 F + + G F GV D T L L + L P + + GQ A + Sbjct: 241 FTIRGFNTGNTFLRNGVADNDLGRTGLD-LSNVERVEVLRGP-ASVLYGQIAPGGAVNVV 298 Query: 294 LYKTVSSSTGATSVTT 309 K +S VT Sbjct: 299 TKKPLSVPFYDVEVTY 314 >gi|83643784|ref|YP_432219.1| hypothetical protein HCH_00903 [Hahella chejuensis KCTC 2396] gi|83631827|gb|ABC27794.1| conserved hypothetical protein [Hahella chejuensis KCTC 2396] Length = 262 Score = 44.6 bits (104), Expect = 0.032, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 7/148 (4%) Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 E + V GV+ + A ++ + R + TLT + G SA +G + +T Sbjct: 97 GENSGWGVSGVISNEGGSARVEAGKKVYSTRGGGQQTLTVVEGSSAFINTGQKQPVRTTQ 156 Query: 300 SSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357 G SV D ++ P + R+ L+++++ +E D Sbjct: 157 RINGRVVDSVEYLDLSSGVYVEPRLTGQNRVELKVRSQSNERDDIQQQR----INTSSLD 212 Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGI 385 T + G + L G + GI Sbjct: 213 TLRVVQLGEWVELGGATLTSNR-SDSGI 239 >gi|167034682|ref|YP_001669913.1| NolW domain-containing protein [Pseudomonas putida GB-1] gi|166861170|gb|ABY99577.1| NolW domain protein [Pseudomonas putida GB-1] Length = 256 Score = 44.6 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 8/109 (7%) Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + A GQ A G + S+ ++ + + TP+ LS + L+ Sbjct: 115 QQVQASEGQPALIQVGQSIPITSTSTDGYGRIQSNTEYRNVTQGFYVTPS-LSGDTVRLQ 173 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I T ++ +V+ DTTV G I LAG + Sbjct: 174 ISTNNDR----ISQERADVVKVQSTDTTVTGRLGEWITLAGYNQQSQAD 218 >gi|317485728|ref|ZP_07944598.1| ribose-5-phosphate isomerase [Bilophila wadsworthia 3_1_6] gi|316923010|gb|EFV44226.1| ribose-5-phosphate isomerase [Bilophila wadsworthia 3_1_6] Length = 177 Score = 44.3 bits (103), Expect = 0.039, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 23/171 (13%) Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHD 311 L AL L S Q + +H Y + S + +T + Sbjct: 9 SGTLKALREWGRATQLTSAGGLLTSNQPLPVLAIKRHAYLAGMSLSTSDYNQTSEITPGE 68 Query: 312 Y--GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRKADTTVELP 363 G + P +L+ R+ L+ +S +P R ++ Sbjct: 69 VTTGFAMTIIPHILADRRVILQYNITLSALDDMQEIDREEVYVQLPQVSTRSFAQRSKMK 128 Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 G T+VLAG + G L + +T + + Sbjct: 129 MGQTLVLAGFEQSRQTANNA----------FGILNTGRDADYGKTLLVVTI 169 >gi|325274767|ref|ZP_08140803.1| NolW domain protein [Pseudomonas sp. TJI-51] gi|324100111|gb|EGB97921.1| NolW domain protein [Pseudomonas sp. TJI-51] Length = 266 Score = 44.3 bits (103), Expect = 0.040, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 8/109 (7%) Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + A GQ A G + S+ ++ + + TPT LS + L+ Sbjct: 137 QQVQASEGQPALIQVGQSIPVTSTSTDGYGRFQSNTEYRNVTQGFYVTPT-LSGETVRLQ 195 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I T ++ +V+ DTT+ G I LAG + Sbjct: 196 ISTNNDR----ISQERADVVKVQSTDTTITGKLGEWITLAGYNQQSQAD 240 >gi|167619352|ref|ZP_02387983.1| probable phage-related secreted protein [Burkholderia thailandensis Bt4] Length = 63 Score = 44.3 bits (103), Expect = 0.040, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411 R+ T L G +VL GL++D + G L + +++ TE+ Sbjct: 2 NTRQLQTVTRLTDGEVVVLGGLIQDRNSTARSGYAWLP------SFLDGRSSSKQRTEVL 55 Query: 412 IAA 414 + Sbjct: 56 LVL 58 >gi|313201537|ref|YP_004040195.1| nolw domain-containing protein [Methylovorus sp. MP688] gi|312440853|gb|ADQ84959.1| NolW domain protein [Methylovorus sp. MP688] Length = 269 Score = 44.3 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 13/112 (11%) Query: 277 LTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + G+ A G + Y T S + + D P L Sbjct: 144 VNVAEGERAFIRVGQRVPYTQQWLVLTQSYAQRIRNTQFQDITTGFAVRPRALGD----- 198 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 +++ E++ + AG + + + T V + G + + G ++ + Sbjct: 199 QVEVEITPRIAQAGAGGVIDFE--ELSTIVMVRPGEWLDIGGTMQSRDDVSR 248 >gi|253999512|ref|YP_003051575.1| NolW domain-containing protein [Methylovorus sp. SIP3-4] gi|253986191|gb|ACT51048.1| NolW domain protein [Methylovorus sp. SIP3-4] Length = 286 Score = 44.3 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 13/112 (11%) Query: 277 LTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + G+ A G + Y T S + + D P L Sbjct: 161 VNVAEGERAFIRVGQRVPYTQQWLVLTQSYAQRIRNTQFQDITTGFAVRPRALGD----- 215 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 +++ E++ + AG + + + T V + G + + G ++ + Sbjct: 216 QVEVEITPRIAQAGAGGVIDFE--ELSTIVMVRPGEWLDIGGTMQSRDDVSR 265 >gi|189348545|ref|YP_001941741.1| type II secretory pathway component [Burkholderia multivorans ATCC 17616] gi|189338683|dbj|BAG47751.1| type II secretory pathway component [Burkholderia multivorans ATCC 17616] Length = 518 Score = 44.3 bits (103), Expect = 0.047, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 89/278 (32%), Gaps = 46/278 (16%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSF 230 + A + K++ N QV + V ++ + Q G + + + Sbjct: 252 TKEAADNIGKLLKHENAISTRQVAITVRTLQIALNKGSQAGVNADVVFNAMHAGLARYAI 311 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAI---RTLAEPTLTAISGQS 284 + + GG V + F V++AL + T+ + TL + Sbjct: 312 SFTSPTSLATGGGAVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVSV 371 Query: 285 ASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 ASF S T SS + + +TT D+ + P V +I L Sbjct: 372 ASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFV---NVLPAVNDHNQIVLAYW 428 Query: 334 TEVSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVLAGLLKDD-IQQL 381 + S+ + S + ++ D T+ L G T+VL G + D Sbjct: 429 ADSSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTT 488 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GI L +N+ +T I +V Sbjct: 489 NTGIAGL-----------TGSWNKSKTFQVIMLKATVV 515 >gi|308274558|emb|CBX31157.1| hypothetical protein N47_E46690 [uncultured Desulfobacterium sp.] Length = 270 Score = 44.3 bits (103), Expect = 0.048, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 26/135 (19%) Query: 277 LTAISGQSASFTSGGQHLYKTV------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 + SG A +G + Y G +V + L TP V+ + Sbjct: 144 INVASGSPAYIITGKRVPYNERWINLNRRHPVGMDTVVFENVETGLEVTP-VIRGDHADI 202 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390 +I +S+ G R +A T + +P G + + G K+ + Sbjct: 203 KIVPRISDRKQGG------IIRYSEAATVINVPLGKWVTIGGADKNQNE----------- 245 Query: 391 IPILGALFRNSRFNR 405 +L F NS ++ Sbjct: 246 --VLQTFFENSGKDK 258 >gi|167755307|ref|ZP_02427434.1| hypothetical protein CLORAM_00820 [Clostridium ramosum DSM 1402] gi|167704246|gb|EDS18825.1| hypothetical protein CLORAM_00820 [Clostridium ramosum DSM 1402] Length = 1622 Score = 44.3 bits (103), Expect = 0.049, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 69/195 (35%), Gaps = 37/195 (18%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVL-------VSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + + + + I+ V + V +D V + + G G+ Sbjct: 1210 ANQDLKLAVGNSQIIGAKVYPEAVFPFKVIFDAADNEIVSV----DKDGLVTGLKAGKTT 1265 Query: 99 VILIGHDGKQML---NLDI-LIERDIAHLEMTLRRF--------IA-----DSNIRVEMV 141 V + D ++ +++ + + +++ + + I+ + Sbjct: 1266 VRVYSQDNPEIYQDCTIEVTEVIDSSKEIADSIKELTIINNQIVLPVVEGYEITIKSSSI 1325 Query: 142 SDTVVLHGMV-RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLK 199 + + L G V + QD Q A+ L+ +N+ N S ++ +A +D+ V ++ Sbjct: 1326 PNIIDLDGKVTPSNQDEQVALVLAV-------KNKATNVVSDTANIIVTVAKKDETVMIE 1378 Query: 200 VTIAEVRRDILKQIG 214 I +V + ++ Sbjct: 1379 FDIIDVVLKVYQEFD 1393 >gi|298155844|ref|YP_003717670.1| putative exported pilus biosynthesis protein [Escherichia coli ETEC 1392/75] gi|156121667|gb|ABU50043.1| LngD [Escherichia coli] gi|297374441|emb|CBL93503.1| putative exported pilus biosynthesis protein [Escherichia coli ETEC 1392/75] Length = 492 Score = 43.9 bits (102), Expect = 0.052, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 12/176 (6%) Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 R + + G+S G S + G V+ F+ + A+ + Sbjct: 273 RKLGAAANLSYLNGGTSIGIDTSLLSSLSGATFGRDFIVPVENT-QNFNITGKIEAIYQL 331 Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDY--GVVLH 317 T L T + Y + + T T++ T G Sbjct: 332 TGKNVLQSGTFITRNNVPVPVNLTQTQNYISGRTQTTNSLTSVSDTTIETDKVITGSSFI 391 Query: 318 FTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371 TP VLS G I + + + + +P+ + T L G +++A Sbjct: 392 LTPRVLSDGSIEVSSAFTKKTLNSIENFESVQLPNVSTTEMFNTSVLKPGTLMMVA 447 >gi|104782518|ref|YP_609016.1| type II secretion system protein D; signal peptide [Pseudomonas entomophila L48] gi|95111505|emb|CAK16225.1| putative type II secretion system protein D; putative signal peptide [Pseudomonas entomophila L48] Length = 244 Score = 43.9 bits (102), Expect = 0.058, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 8/109 (7%) Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + A GQ A G + ++ T+ + + TP LS + L+ Sbjct: 115 QQVQASEGQPALIQVGQSVPITSTATDGYGRLQTNTEYRNVTQGFYVTPR-LSGDTVRLQ 173 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I T ++ +V+ DTTV G I LAG + Sbjct: 174 ISTNNDR----MSQERPDVVKVQSTDTTVTGKLGEWITLAGYNQQSQAD 218 >gi|167518806|ref|XP_001743743.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777705|gb|EDQ91321.1| predicted protein [Monosiga brevicollis MX1] Length = 7357 Score = 43.9 bits (102), Expect = 0.059, Method: Composition-based stats. Identities = 57/345 (16%), Positives = 107/345 (31%), Gaps = 27/345 (7%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 +A V++ + G+ I + + + V++ A + +S T + Sbjct: 4753 SAPVVSRVEPVQGQVGTIITIVGEQLFGGADEKPTAVVIGGTPVASIDSNSNNTHVIVTL 4812 Query: 93 NV----GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 G AN+ L +G + +E D + + I + VVL Sbjct: 4813 AEPAVIGPANISLTSANGAPI------VESDTSLFTYLVAGEITNVQPATGTRGTRVVLE 4866 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G + + ++ L S + ++ + L AG + V I E Sbjct: 4867 GTNLDLGST-----VTRVLLGGSVITDFDVAAGAGQIVLTAPAGTAGGPVSV-IIETEHG 4920 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 + + + S + A+ GG V+ G + G + VL T Sbjct: 4921 ATATLASSWTFVPAGVISSIAPASGQGGALVTITGTSLLGG---ASNVSHVLVDGINVTR 4977 Query: 269 IRTLAEPTLTAISG-QSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLS 324 I +L+ + Q A +G + + V+ S + T +V P Sbjct: 4978 IESLSNTEIVVEVAVQPAGDVTGVERSVRVVADSGAFVESLGFTYTPAPIVTSVEPLQGQ 5037 Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 G R+ S G +A R A T + +V Sbjct: 5038 KGT---RVTISGSNLRQGASAVSAVLLAGRSA-TVISEDDSEVVV 5078 Score = 43.9 bits (102), Expect = 0.066, Method: Composition-based stats. Identities = 49/342 (14%), Positives = 99/342 (28%), Gaps = 21/342 (6%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 +A V++ + G+ I + + + V++ A + +S T + Sbjct: 2427 SAPVVSRVEPVQGQVGTIITIVGEQLFGGADEKPTAVVIGGTPVASIDSNSNNTHVIVTL 2486 Query: 93 NV----GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 G AN+ L +G + +E D + + I + VVL Sbjct: 2487 AEPAVIGPANISLTSANGAPI------VESDTSLFTYLVAGEITNVQPATGTRGTRVVLE 2540 Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208 G + + ++ L S + ++ + L AG + V I E Sbjct: 2541 GTNLDLGST-----VTRVLLGGSVITDFDVAAGAGQIVLTAPAGTAGGPVSV-IIETEHG 2594 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV-LHALERAT 267 + + + S + A+ GG V+ G + G + ++ + Sbjct: 2595 ATATLASSWTFVPAGVISSIAPASGQGGALVTITGTSLLGGASNVSHVLVDGINVTRIES 2654 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 T + + G + + + T +V P G Sbjct: 2655 LSNTEIVVEVAVQPAGDVTGVEGSVRVVADSGAFVESLGFTYTPAPIVTSVEPLQGQKGT 2714 Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369 R+ S G +A R A T + +V Sbjct: 2715 ---RVTISGSNLRQGASAVSAVLLAGRSA-TVISEDDSEVVV 2752 >gi|161522585|ref|YP_001585514.1| type II secretory pathway component PulD-like protein [Burkholderia multivorans ATCC 17616] gi|160346138|gb|ABX19222.1| type II secretory pathway component PulD-like protein [Burkholderia multivorans ATCC 17616] Length = 534 Score = 43.9 bits (102), Expect = 0.059, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 89/278 (32%), Gaps = 46/278 (16%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSF 230 + A + K++ N QV + V ++ + Q G + + + Sbjct: 268 TKEAADNIGKLLKHENAISTRQVAITVRTLQIALNKGSQAGVNADVVFNAMHAGLARYAI 327 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAI---RTLAEPTLTAISGQS 284 + + GG V + F V++AL + T+ + TL + Sbjct: 328 SFTSPTSLATGGGAVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVSV 387 Query: 285 ASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 ASF S T SS + + +TT D+ + P V +I L Sbjct: 388 ASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFV---NVLPAVNDHNQIVLAYW 444 Query: 334 TEVSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVLAGLLKDD-IQQL 381 + S+ + S + ++ D T+ L G T+VL G + D Sbjct: 445 ADSSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTT 504 Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 GI L +N+ +T I +V Sbjct: 505 NTGIAGL-----------TGSWNKSKTFQVIMLKATVV 531 >gi|134287561|ref|YP_001109727.1| Type II secretory pathway component PulD-like protein [Burkholderia vietnamiensis G4] gi|134132211|gb|ABO59946.1| Type II secretory pathway component PulD-like protein [Burkholderia vietnamiensis G4] Length = 534 Score = 43.9 bits (102), Expect = 0.063, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 80/247 (32%), Gaps = 35/247 (14%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSF 230 + A + K++N N QV + V ++ + Q G + + + Sbjct: 268 TKEAADNIGKLLNHENAISTRQVAITVRTLQIALNKGSQAGMNADVVFNAMHAGLARYAI 327 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQS--- 284 + + GG V + F V++AL + T ++G Sbjct: 328 SFMSPTSLATGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVSI 387 Query: 285 ASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 ASF S T SS + + +TT D+ + P V +I L Sbjct: 388 ASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFV---NVLPAVNDHNQIVLAYW 444 Query: 334 TEVSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVLAGLLKDD-IQQL 381 + S+ + S + ++ D T+ L G T+VL G + D Sbjct: 445 ADSSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTT 504 Query: 382 KEGIPLL 388 GI L Sbjct: 505 NTGIAGL 511 >gi|331092338|ref|ZP_08341165.1| hypothetical protein HMPREF9477_01808 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401571|gb|EGG81154.1| hypothetical protein HMPREF9477_01808 [Lachnospiraceae bacterium 2_1_46FAA] Length = 317 Score = 43.1 bits (100), Expect = 0.097, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 19/46 (41%) Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++ + +PLL IP++G LF + + I I V Sbjct: 123 IQFTDTFQIDKVPLLGDIPVIGPLFFQNSYITTYLGILIFLIAAFV 168 >gi|198420230|ref|XP_002121268.1| PREDICTED: similar to Fc fragment of IgG binding protein [Ciona intestinalis] Length = 2313 Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 96/272 (35%), Gaps = 36/272 (13%) Query: 86 TMYLFGKNVGQANVILIGHDGKQMLNLDI---LIERDIAHLEMTLRRFI---------AD 133 +YL K VG I G ++ + I T + + Sbjct: 407 EVYLSLK-VGSTLAFAIDTTGSMSGEINAAKSRVSAIINETTGTTDQPLFFVLSEFNDPR 465 Query: 134 SNIRVEMVSDTVVLHGMVR---TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + S T +L G+ + + + L+ + N S+ + V+ ++ Sbjct: 466 VGPTLATTSPTAILTGLNALRASGGGDEPELALAGIY------NALIASTKRSVVFMITD 519 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 A V L+ + + + ++++I +T + PS + + S GG +V Sbjct: 520 ATAKDVNLETRV--IAQSVIRKIRIVSLLTKNL--PSAAGFPLYNRISSSSGGLVTVTSK 575 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATS 306 D + AL ++ +TA Q++SF T+ +S TG + Sbjct: 576 SDITGTSQLFRALTEQGQVKLKIALNVTA---QNSSFVMDSTITRVTILLTRTSLTGNLN 632 Query: 307 V--TTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336 V T+ G + F V + G + +++ + V Sbjct: 633 VASITNPAG-SVGFKELVNNDGLVLIQLNSTV 663 >gi|237734198|ref|ZP_04564679.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382758|gb|EEO32849.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 1602 Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 69/195 (35%), Gaps = 37/195 (18%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVL-------VSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + + + + I+ V + V +D V + + G G+ Sbjct: 1185 ANQDLKLAVGNSQIIGAKVYPEAVFPFKVIFDAADNEIVSV----DKDGLVTGLKAGKTT 1240 Query: 99 VILIGHDGKQML---NLDI-LIERDIAHLEMTLRRF--------IA-----DSNIRVEMV 141 V + D ++ +++ + + +++ + + I+ + Sbjct: 1241 VRVYSQDNPEIYQDCTIEVTEVIDSSKEIADSIKELTIINNQIVLPVVEGYEITIKSSSI 1300 Query: 142 SDTVVLHGMV-RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLK 199 + + L G V + QD Q A+ L+ +N+ N S ++ +A +D+ V ++ Sbjct: 1301 PNIIDLDGKVTPSNQDEQVALVLAV-------KNKATNVVSDTANIIVTVAKKDETVMIE 1353 Query: 200 VTIAEVRRDILKQIG 214 I +V + ++ Sbjct: 1354 FDITDVVLKVYQEFD 1368 >gi|311109976|ref|YP_003982827.1| lipoprotein 4 [Achromobacter xylosoxidans A8] gi|310764665|gb|ADP20112.1| lipoprotein 4 [Achromobacter xylosoxidans A8] Length = 556 Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 81/239 (33%), Gaps = 35/239 (14%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHAL 263 V + G + S++ + + AA G + G S G + ++ AL Sbjct: 315 VSVNDQHDAGIDWRVIYSTASAAAAGAAPTGTMSTAAGTIASATVGSGPFKGSDAIIKAL 374 Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---------------SVT 308 + L+A++ + ++ Y +TG T SV Sbjct: 375 DEIGTTTRSTAIPLSALNRRPITYADRKTFSYINEVQTTGLTSSDSSNGSFSTVPNVSVR 434 Query: 309 THDYGVV--LHFTPTVLSPGRIGLRI--QTEVSEPVIGV------NAGDMPSYRVRK--A 356 D V L P G+I L I + +++P+ + N ++ VR Sbjct: 435 QKDVTVGQFLTLVPDAQEDGQILLTISYDSTINDPLQTIKFGDSKNGIEIQQLTVRGNGM 494 Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET--EIFIA 413 V L SG +V+AG KD Q ++ K PI LF + + + I Sbjct: 495 VQQVALQSGQPLVIAGFQKDQDQTSRQR--FDEKAPI---LFGGANSTNNQKLYNLIIV 548 >gi|153800448|ref|ZP_01955034.1| CofD [Vibrio cholerae MZO-3] gi|124124074|gb|EAY42817.1| CofD [Vibrio cholerae MZO-3] Length = 486 Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 78/247 (31%), Gaps = 21/247 (8%) Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196 VE + + + G I+DS L + K++ + Q Sbjct: 205 DVETIVEHYLTSGQYSLIKDSS---------LIAINARPSEFAEVNKILKKFKEDNQRQF 255 Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFS 255 + I + + + +G +++ G + S D G + + Sbjct: 256 VVTYKIFTLDKSKEQSLGGGVNLSHQVPGTTVGITTGMLSSLGSGINFDRQFYGDGKKLN 315 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVT 308 L AL + T + L + + + + + T +SV Sbjct: 316 MTGQLEALFKLTGSKLLQSGSFITRNNSPIPLNLTNSKYFVSGRTQTKNDNNTVTDSSVE 375 Query: 309 THDY--GVVLHFTPTVLSPGRIG-LRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPS 364 T G TP VLS G+I L T+ + I + + +P+ + T + Sbjct: 376 TSQIVTGTSFILTPRVLSDGKIEVLSGFTKKTLNSIDLFESVQLPNVTTTEMFNTSTVTP 435 Query: 365 GGTIVLA 371 G +++A Sbjct: 436 GSLLMVA 442 >gi|6176558|gb|AAF05619.1|AF190907_1 XpsD [Xanthomonas oryzae pv. oryzae] Length = 124 Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 24/119 (20%) Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-------------- 222 A SS + V+ L++ QV ++ +AEV Q G S Sbjct: 10 AWSSIRDVIEKLDVM-PMQVHIEAQVAEVNLTGKLQYGVNWYFENSVNAAADSAANSTGI 68 Query: 223 ------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 +S ++ D GK E G + + +++HAL+ T +R L P Sbjct: 69 GAGAGLASAAGRNIWGDIAGKITGEKG---AQWTFLGKNAASIIHALDEVTNVRLLQTP 124 >gi|313498035|gb|ADR59401.1| NolW domain protein [Pseudomonas putida BIRD-1] Length = 246 Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 8/109 (7%) Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + A GQ A G + S+ ++ + + TP+ LS + L Sbjct: 117 QQVQASEGQPALIQVGQSIPITSTSTDGYGRIQSNTEYRNVTQGFYVTPS-LSGETVRLE 175 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I + +V+ DTTV G I LAG + Sbjct: 176 ISSNNDRISHERAD----VVKVQSTDTTVTGKLGEWITLAGFNQQSQAD 220 >gi|195133198|ref|XP_002011026.1| GI16315 [Drosophila mojavensis] gi|193907001|gb|EDW05868.1| GI16315 [Drosophila mojavensis] Length = 1279 Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129 V+DP A S + L GK++G+ +V ++ G+ + +I + D L + R Sbjct: 648 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVSLSRLIVR 702 Query: 130 FIADSNIRVEMVS 142 I+ + + + Sbjct: 703 VISGLQLTITPEN 715 >gi|332828586|gb|EGK01286.1| hypothetical protein HMPREF9455_02478 [Dysgonomonas gadei ATCC BAA-286] Length = 307 Score = 42.7 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 M+ + F+ ++ + SS S +P A +I + + ++ ++ ++ + Sbjct: 1 MKSFKYIFYILLIVLGISSCKSDNDMPEFPTKYARII-QKTITVKTAERYNVTIHPIFDS 59 Query: 61 QVPVDVQDV-LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 + + V VSD + + HS ++ + G GQ + L DGK + + Sbjct: 60 EETAKEKFVWSVSDESLVSLHTHSDNSLTIKGLVPGQTTLKLESEDGKLQYYSTVNV 116 >gi|195565393|ref|XP_002106286.1| GD16787 [Drosophila simulans] gi|194203660|gb|EDX17236.1| GD16787 [Drosophila simulans] Length = 1400 Score = 42.7 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 8/86 (9%) Query: 58 IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILI 116 + + + V +DP A S + L GK++G+ +V ++ G+ + +I + Sbjct: 623 RVTDLVQPLLRV--ADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRV 675 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVS 142 D +L + R I+ + + + Sbjct: 676 GSDKVNLSKLIVRVISGLQLTISPDN 701 >gi|195469906|ref|XP_002099877.1| GE16734 [Drosophila yakuba] gi|194187401|gb|EDX00985.1| GE16734 [Drosophila yakuba] Length = 1410 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129 V+DP A S + L GK++G+ +V ++ G+ + +I + D +L + R Sbjct: 634 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVNLSKLIVR 688 Query: 130 FIADSNIRVEMVS 142 I+ + + + Sbjct: 689 VISGLQLTISPDN 701 >gi|194762572|ref|XP_001963408.1| GF20383 [Drosophila ananassae] gi|190629067|gb|EDV44484.1| GF20383 [Drosophila ananassae] Length = 1260 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129 V+DP A S + L GK++G+ +V ++ G+ + +I + D +L + R Sbjct: 640 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVNLSKLIVR 694 Query: 130 FIADSNIRVEMVS 142 I+ + + + Sbjct: 695 VISGLQLTISPDN 707 >gi|195340420|ref|XP_002036811.1| GM12468 [Drosophila sechellia] gi|194130927|gb|EDW52970.1| GM12468 [Drosophila sechellia] Length = 1401 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129 V+DP A S + L GK++G+ +V ++ G+ + +I + D +L + R Sbjct: 634 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVNLSKLIVR 688 Query: 130 FIADSNIRVEMVS 142 I+ + + + Sbjct: 689 VISGLQLTISPDN 701 >gi|24640068|ref|NP_572300.1| CG14446 [Drosophila melanogaster] gi|7290685|gb|AAF46133.1| CG14446 [Drosophila melanogaster] Length = 1399 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129 V+DP A S + L GK++G+ +V ++ G+ + +I + D +L + R Sbjct: 634 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVNLSKLIVR 688 Query: 130 FIADSNIRVEMVS 142 I+ + + + Sbjct: 689 VISGLQLTISPDN 701 >gi|26990809|ref|NP_746234.1| NolW domain protein [Pseudomonas putida KT2440] gi|24985815|gb|AAN69698.1|AE016606_1 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 267 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 8/109 (7%) Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + A GQ A G + S+ ++ + + TP+ LS + L+ Sbjct: 138 QQVQASEGQPALIQVGQSIPITSTSTDGYGRIQSNTEYRNVTQGFYVTPS-LSGETVRLQ 196 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I + +V+ DTTV G I LAG + Sbjct: 197 ISSNNDRISHERAD----VVKVQSTDTTVTGKLGEWITLAGFNQQSQAD 241 >gi|195174728|ref|XP_002028124.1| GL21310 [Drosophila persimilis] gi|194115864|gb|EDW37907.1| GL21310 [Drosophila persimilis] Length = 1432 Score = 42.3 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129 V+DP A S + L GK++G+ +V ++ G+ + +I + D +L + R Sbjct: 631 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVNLSKLIVR 685 Query: 130 FIADSNIRVEMVS 142 I+ + + + Sbjct: 686 VISGLQLTITPDN 698 >gi|195045927|ref|XP_001992057.1| GH24421 [Drosophila grimshawi] gi|193892898|gb|EDV91764.1| GH24421 [Drosophila grimshawi] Length = 1509 Score = 42.3 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 8/86 (9%) Query: 58 IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILI 116 + + + V +DP A S + L GK++G+ +V ++ G+ + +I + Sbjct: 671 RVTDLVQPLLRV--ADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRV 723 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVS 142 D +L + R I+ + + + Sbjct: 724 GSDKVNLNKLIVRVISGLQLTITPEN 749 >gi|120556397|ref|YP_960748.1| NolW domain-containing protein [Marinobacter aquaeolei VT8] gi|120326246|gb|ABM20561.1| NolW domain protein [Marinobacter aquaeolei VT8] Length = 264 Score = 42.3 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 42/292 (14%), Positives = 83/292 (28%), Gaps = 73/292 (25%) Query: 96 QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155 A+ ++ ++ L+ R + + +R S + V +V+ G + Sbjct: 22 TASTVVWAQSEARVYELN---NRTADDIALQIRELYQQSPVTVTARGQQLVVRGEPALLD 78 Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215 + ++ +++ Q+ + V + Sbjct: 79 E------------------------IGTLVQSMDVP-PVQMRISVR-------------Y 100 Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 + I G SG S + G V R + + E Sbjct: 101 RQDIGGKQSGGGVSLSNGSAGASVER-----------------------RTISTNSTRER 137 Query: 276 TLTAISGQSASFTSGG--QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 L GQSA TSG + A + + +P +S + L I Sbjct: 138 QLIVQDGQSAHITSGNVRTLPFAVKGGRNPAAILQQVETRSGFVVSPQAISNQAVELSIV 197 Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + +P +P Y T + G + L G + + Q ++GI Sbjct: 198 SFEEDPAA------LPGYETEALMTIRRVEPGQWVSLGG-TRTSMNQEQQGI 242 >gi|108763400|ref|YP_629627.1| hypothetical protein MXAN_1370 [Myxococcus xanthus DK 1622] gi|108467280|gb|ABF92465.1| hypothetical protein MXAN_1370 [Myxococcus xanthus DK 1622] Length = 192 Score = 42.3 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 25/55 (45%) Query: 64 VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 + + V V + + P + + G ++G + V++ +Q L++ + + + Sbjct: 138 ENAERVRVQSSAVVEASLGEPNQIMVQGLSLGVSEVLVWRQGSRQPLSVRVEVAK 192 >gi|194896140|ref|XP_001978420.1| GG19574 [Drosophila erecta] gi|190650069|gb|EDV47347.1| GG19574 [Drosophila erecta] Length = 1405 Score = 42.3 bits (98), Expect = 0.18, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129 V+DP A S + L GK++G+ +V ++ G+ + +I + D +L + R Sbjct: 634 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVNLSKLIVR 688 Query: 130 FIADSNIRVEMVS 142 I+ + + + Sbjct: 689 VISGLQLTISPDN 701 >gi|195457020|ref|XP_002075390.1| GK15395 [Drosophila willistoni] gi|194171475|gb|EDW86376.1| GK15395 [Drosophila willistoni] Length = 1479 Score = 42.3 bits (98), Expect = 0.18, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 8/86 (9%) Query: 58 IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILI 116 + + + V +DP A S + L GK++G+ +V ++ G+ + +I + Sbjct: 659 RVTDLVQPLLRV--ADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRV 711 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVS 142 D L + R I+ + + + Sbjct: 712 GSDKVTLSKLIVRVISGLQLTITPDN 737 >gi|195399071|ref|XP_002058144.1| GJ15653 [Drosophila virilis] gi|194150568|gb|EDW66252.1| GJ15653 [Drosophila virilis] Length = 1395 Score = 42.3 bits (98), Expect = 0.19, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 8/86 (9%) Query: 58 IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILI 116 + + + V +DP A S + L GK++G+ +V ++ G+ + +I + Sbjct: 661 RVTDLVQPLLRV--ADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRV 713 Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVS 142 D +L + R I+ + + + Sbjct: 714 GSDKVNLSKLIVRVISGLQLTITPEN 739 >gi|148546987|ref|YP_001267089.1| NolW domain-containing protein [Pseudomonas putida F1] gi|148511045|gb|ABQ77905.1| NolW domain protein [Pseudomonas putida F1] Length = 244 Score = 42.3 bits (98), Expect = 0.19, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 8/109 (7%) Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + A GQ A G + S+ ++ + + TP+ LS + L+ Sbjct: 115 QQVQASEGQPALIQVGQSIPITSTSTDGYGRIQSNTEYRNVTQGFYVTPS-LSGETVRLQ 173 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 I + +V+ DTTV G I LAG + Sbjct: 174 ISSNNDRISHERAD----VVKVQSTDTTVTGKLGEWITLAGFNQQSQAD 218 >gi|160893224|ref|ZP_02074012.1| hypothetical protein CLOL250_00770 [Clostridium sp. L2-50] gi|156865307|gb|EDO58738.1| hypothetical protein CLOL250_00770 [Clostridium sp. L2-50] Length = 686 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 15/128 (11%) Query: 8 FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG--KGKKISIGLNKVIILQVPVD 65 ++ L + P++E+ AA + V + K++++ K L+ V Sbjct: 9 IKRFFALVLAFAVAVSILTVPVQESYAAGGKVKTVAVTNLPAKQLTLKKGKSFTLKTKVS 68 Query: 66 V--QDVL------VSDPTKADVVVHSPRTMYLFGKNVGQANVILIG-HDGKQMLNLDILI 116 V + V S+ A V + K G A + + D K+ + + + Sbjct: 69 VSGKKVSKAVTYKTSNKKVATVNAKGK----ITAKKKGTATITIYSKADKKKTCKIKVTV 124 Query: 117 ERDIAHLE 124 + ++ Sbjct: 125 GTPVTKVK 132 >gi|254224924|ref|ZP_04918539.1| Type II secretory pathway, component PulD [Vibrio cholerae V51] gi|125622612|gb|EAZ50931.1| Type II secretory pathway, component PulD [Vibrio cholerae V51] Length = 405 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 3/134 (2%) Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-GDF 245 LL +++V L IA + +Q+ F + S+ ++ D G S G D Sbjct: 253 LLVRGTQEEVKLAKRIAALIDVKRRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDI 312 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305 V + F AL R++ E L A+ Q F G + S Sbjct: 313 VVPPFTETTDFLKNFQALYTNGIARSVYETNLLALENQQGQF--GKKQTATLTLISDKEV 370 Query: 306 SVTTHDYGVVLHFT 319 + L+ T Sbjct: 371 KTEKIEADNSLYVT 384 >gi|198469697|ref|XP_001355093.2| GA12993 [Drosophila pseudoobscura pseudoobscura] gi|198146992|gb|EAL32149.2| GA12993 [Drosophila pseudoobscura pseudoobscura] Length = 1449 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129 V+DP A S + L GK++G+ +V ++ G+ + +I + D +L + R Sbjct: 651 VADPKIA-----SLKGRILQGKSMGRTDVQVLSPITGRVIGTKEIRVGSDKVNLSKLIVR 705 Query: 130 FIADSNIRVEMVS 142 I+ + + + Sbjct: 706 VISGLQLTITPDN 718 >gi|149378239|ref|ZP_01895952.1| hypothetical protein MDG893_04884 [Marinobacter algicola DG893] gi|149357466|gb|EDM45975.1| hypothetical protein MDG893_04884 [Marinobacter algicola DG893] Length = 261 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 79/239 (33%), Gaps = 30/239 (12%) Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV-TIAEVRRD 208 RT Q +QR+ E + + + + +++ + + GE +V ++ + E Sbjct: 29 EARTYQMAQRSAEGVAQQIRELYPDGQVSITARG--QQMVVRGEPEVLDEIGRLVETMDV 86 Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268 Q+ + + + GG FSV + + + A + T Sbjct: 87 APSQMRI-------------TVRSRHNVDAKTGGGGFSVN------NNQVSVQAERKVTT 127 Query: 269 IRTLAEPTLTAISGQSASFTSGG--QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 R E TL GQSA +SG A + + +P V+S Sbjct: 128 TRRNQERTLIVQDGQSAHISSGQVRTVPVAIRGGRNPAAFLEQVETRSGFLVSPQVISDQ 187 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + L I + +P G+ P Y T + G + L + + GI Sbjct: 188 AVELNIVSFEEDPK-----GNPPGYDTEAVMTIRRVEPGEWVELGS-TRQQRVGERSGI 240 >gi|89885736|ref|YP_515934.1| hypothetical protein Rfer_4249 [Rhodoferax ferrireducens T118] gi|89347734|gb|ABD71936.1| hypothetical protein Rfer_4249 [Rhodoferax ferrireducens T118] Length = 483 Score = 41.9 bits (97), Expect = 0.23, Method: Composition-based stats. Identities = 64/427 (14%), Positives = 130/427 (30%), Gaps = 71/427 (16%) Query: 42 VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQ---- 96 + +++ ++ +L+ + ++D AD++ H+ T+ + G +G Sbjct: 73 LPRSTSQRMPPVFDQSFVLREQTPL---AITD--VADIIRAHTGLTILINGDAIGSQRIG 127 Query: 97 ----ANV-ILIG----HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147 ++ L+ G LD I+ + + + I V Sbjct: 128 VDSVTSLKSLLDSTTSRFGMTWQYLDDAIQIQQSVVRTFVIDRPGFEAITV--------- 178 Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVR 206 G + ++ + A S+ + N + +A V + EV Sbjct: 179 -GSAGAAAKTVTRDPWADILDAIRVVAPRARVSAMRSSNSITVADSPANVARIAELLEVD 237 Query: 207 -RDILKQIGFQHSITGSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDR------- 253 R K++ + + F GG+ +S S+ G + Sbjct: 238 DRQASKKVTLLWKLVVFTKSVGGETGLGFNYLKTGGRKISFASPTSLVGTIASALKVESI 297 Query: 254 ----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT- 308 E +L+ L ++ + + + + F + + Y + S+ A+S T Sbjct: 298 SGESLGSEMILNLLNQSGSTVVVRDGITEIAQNGRSDFGTEKEVFYISRSTPGVASSSTT 357 Query: 309 ---------THDYGVVLHFTPTVLSPGRIGL-------RIQTEVSEPVIGVNAGDMPSYR 352 + G+ F TV R+ L + S G P Sbjct: 358 SASVGLEQASVKVGLAGAFGATVFDSERMTLGYDFTVSSLDQLKSVTSAGTTLQS-PETT 416 Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI-PLLSKIPILGALFRNSRFNREETEIF 411 R + V + G T +L+ D + GI P I LG + + Sbjct: 417 KRYSRGQVPIKHGETWILSAETSDSNSFDRRGILPAQGSI--LG---GSETAGSSRDQWL 471 Query: 412 IAATPFL 418 + TP L Sbjct: 472 LLVTPIL 478 >gi|321460209|gb|EFX71254.1| hypothetical protein DAPPUDRAFT_216884 [Daphnia pulex] Length = 342 Score = 41.9 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 65/210 (30%), Gaps = 21/210 (10%) Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ----VTLKVTIAEVRRDI 209 +++ A ++ ++ +Q++ +++N L I + ++ E + Sbjct: 13 VEERPDATNVNNWHWTEKNASQWSKDKIDELLNGLEINDKIGNCVITEIEKMEGEASANN 72 Query: 210 LKQ---IGFQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFE 257 K F+ ++ SG + G + D +V + Sbjct: 73 RKAKLIFFFEWTLHLKWSGKVSGTTKNIEGTVIIPNLSDENNADEVDVNVTTSATGPDAD 132 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317 + + + + E I FT G K G + T D GV L Sbjct: 133 AMKQLMRTVG-AKVIREQLAKYIKSLKEDFTQGMILPKKDTEVKNGDKTQVTKDPGVKL- 190 Query: 318 FTP-TVLSPGRIGLRIQTEVSEPVIGVNAG 346 P +V +P L+I +V N Sbjct: 191 --PSSVSTPDMKQLQIGVKVEMQSYTCNQN 218 >gi|158298151|ref|XP_318358.4| AGAP004670-PA [Anopheles gambiae str. PEST] gi|157014468|gb|EAA13567.5| AGAP004670-PA [Anopheles gambiae str. PEST] Length = 1375 Score = 41.6 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 52/108 (48%), Gaps = 9/108 (8%) Query: 47 GKKISIGLNKVIILQVPVDVQDVL-VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH- 104 ++S +++ L+V VQ +L V+DP A RT L G+ +G+ +V ++ Sbjct: 629 SGRVSYLISRRTGLRVTDLVQSLLRVADPKIA---TLRGRT--LQGRAMGRTDVQVLSPI 683 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 +G+ + ++ + D + + + ++ +++ + D + +G + Sbjct: 684 NGRVIGAREVRVGSDKVTITRLMVKVVSG--LQLSISGDGSIDNGYIA 729 >gi|56550580|ref|YP_161646.1| hypothetical protein RMe0022 [Cupriavidus metallidurans CH34] gi|94152701|ref|YP_582103.1| hypothetical protein Rmet_6294 [Cupriavidus metallidurans CH34] gi|56410286|emb|CAI30168.1| hypothetical protein RMe0022 [Cupriavidus metallidurans CH34] gi|93359067|gb|ABF13153.1| Type II secretory pathway, component PulD [Cupriavidus metallidurans CH34] Length = 600 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 102/306 (33%), Gaps = 41/306 (13%) Query: 147 LHGMVRTIQDSQRAVELSE----TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 L G+ ++I + V +E T + + A ++ +++ VTLK + Sbjct: 295 LEGVKKSILPAMTMVGSAELNPATGVLTLRDTKEAVDAADEIIRKQIAIYSRMVTLKFQM 354 Query: 203 AEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--SFE 257 ++ + G ++ + P + A VS G+ + Sbjct: 355 IDLTVSDAGEAGVDWNVVLTKALQNLPGFTVNALSPATLVSSTAGGVGLGITSGGFNGTQ 414 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---------- 307 +++AL++ + T+ F + + S ST AT+ Sbjct: 415 AIVNALKQYG--TVTSGVTIPVSMRNRHGFQYNNRRTFSYASGSTPATTTAGGTGGIPGI 472 Query: 308 --TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKA--- 356 +T G L S + L I + S+ + + S + Sbjct: 473 ITSTATVGFKLAAYADATSRDDVNLTIALDQSKQDGPLEKFTSGSGNNQQSVQTINIVGK 532 Query: 357 ---DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK-IPILGALFRNSRFNREETEIFI 412 + + +G T+++A L +DD + L + +P+L L + ++ T + Sbjct: 533 GIPKQDIIVRNGQTVLMAALDQDDTANTRR---TLGESLPML--LGGSQTVSKTRTFTLL 587 Query: 413 AATPFL 418 AT + Sbjct: 588 LATVMV 593 >gi|325972807|ref|YP_004248998.1| ABC transporter inner membrane protein [Spirochaeta sp. Buddy] gi|324028045|gb|ADY14804.1| ABC-type transporter, integral membrane subunit [Spirochaeta sp. Buddy] Length = 310 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 17/131 (12%) Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-----TVLSPGRIGLRI 332 G G T+ + V G+++ + + I L+ Sbjct: 34 VTNLGLEGLMLVGYFASAITIKMTEATLGVQALPVGILVGVAAGAIFSLLHAFASINLKA 93 Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392 +S I + A + Y R SG +L G+++ + IP+LS+IP Sbjct: 94 DQVISGTAINMLAAALTVYLARTIS-----GSGNVRILMGIVRKN-------IPVLSQIP 141 Query: 393 ILGALFRNSRF 403 I+G LF + + Sbjct: 142 IIGPLFFSQSY 152 >gi|15207769|dbj|BAB62900.1| CofD [Escherichia coli] Length = 485 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 18/194 (9%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250 Q L I + + ++++G ++ + G S D G F V Sbjct: 249 RQFVLTYKIFTIDKKKVRKLGAAANLNYLNGG--TSIGIDTSLLSSLSGASFGRDFVVPV 306 Query: 251 --LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---- 304 + +F+ + A+ + T L T + Y + + T Sbjct: 307 EQIQKFNITGKIEAIYQLTGKNVLQSGTFITRNNVPVPVNLTQTQNYISGRTQTTNSLTS 366 Query: 305 ---TSVTTHDY--GVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKAD 357 T++ T G TP +LS G I + + + + +P+ + Sbjct: 367 VSDTTIETDKVITGSSFILTPRILSDGSIEVTSAFTKKTLNAIDNFESVQLPNVSTTEMF 426 Query: 358 TTVELPSGGTIVLA 371 T L G +++A Sbjct: 427 NTSVLKPGTLMMVA 440 >gi|189467019|ref|ZP_03015804.1| hypothetical protein BACINT_03401 [Bacteroides intestinalis DSM 17393] gi|189435283|gb|EDV04268.1| hypothetical protein BACINT_03401 [Bacteroides intestinalis DSM 17393] Length = 488 Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 13/123 (10%) Query: 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60 MR + LF + + P I + +N S + + +G+ +++ + Sbjct: 1 MRTKLDFLLWICFFVLFVACEDHPQEPDIVAVTSVTLNESALSLKEGRNVTL----SATI 56 Query: 61 QVPVDVQDVLV----SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 P D + V SDP A V + + G A + +I DG + + + Sbjct: 57 -TPDDATNQNVIWKSSDPDIATVDTNGK----IRALKPGTATITVITEDGGKTATCTVTV 111 Query: 117 ERD 119 E Sbjct: 112 EPG 114 >gi|242022904|ref|XP_002431877.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517218|gb|EEB19139.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 1141 Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 53/115 (46%), Gaps = 9/115 (7%) Query: 47 GKKISIGLNKVIILQVPVDVQDVL-VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH- 104 +++ +N+ L+V VQ +L VSDP A++ R + G++VG+ V ++ Sbjct: 618 SGRVNYFVNRRTWLRVTDLVQSLLRVSDPRIANL-----RGKIIRGRSVGRTEVQVLSPI 672 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 G+ + ++ + D L + ++ + + D+ V +G + ++R Sbjct: 673 TGRVIGAKEVRVGNDKVTLLRLIVNVVSGLQLSISP--DSTVENGYIAETSVTRR 725 >gi|330836048|ref|YP_004410689.1| nucleoside ABC transporter membrane protein [Spirochaeta coccoides DSM 17374] gi|329747951|gb|AEC01307.1| nucleoside ABC transporter membrane protein [Spirochaeta coccoides DSM 17374] Length = 310 Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I LR +S I + A + Y R V SG ++ G+++ D +P Sbjct: 88 SINLRADQTISGTAINMLAAALTVYLAR-----VFSGSGNIRIMMGIVRSD-------VP 135 Query: 387 LLSKIPILGALFRNSRF 403 +LSKIP+LG LF + + Sbjct: 136 VLSKIPVLGPLFFSQTY 152 >gi|170722553|ref|YP_001750241.1| NolW domain-containing protein [Pseudomonas putida W619] gi|169760556|gb|ACA73872.1| NolW domain protein [Pseudomonas putida W619] Length = 244 Score = 41.6 bits (96), Expect = 0.32, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 8/109 (7%) Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + A GQ A G + S+ ++ + + TP+++ +R Sbjct: 115 QQVQASEGQPALIQVGQSIPVTSTSTDGYGRIQSNTEYRNVTQGFYVTPSLIGE---TVR 171 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 +Q + + D+ +V+ DTTV G I LAG + Sbjct: 172 LQISTNNDRMSHERADV--VKVQSTDTTVTGKLGEWITLAGFNQQSQAD 218 >gi|15225516|ref|NP_181494.1| glycosyl hydrolase family 17 protein [Arabidopsis thaliana] gi|2795803|gb|AAB97119.1| putative beta-1,3-glucanase [Arabidopsis thaliana] gi|20197108|gb|AAM14919.1| putative beta-1,3-glucanase [Arabidopsis thaliana] gi|330254607|gb|AEC09701.1| glycosyl hydrolase-17 [Arabidopsis thaliana] Length = 549 Score = 41.6 bits (96), Expect = 0.32, Method: Composition-based stats. Identities = 23/261 (8%), Positives = 71/261 (27%), Gaps = 19/261 (7%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV--SDPT 75 P + + + +AV + + G + V ++ V + ++P Sbjct: 8 FILPFLLIVAGVIFQLSAVTSAIGINYGTLGNLQPPQQVVDFIKTKTTFDSVKIYDANPD 67 Query: 76 KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI-----LIERDIAHLEMTLRRF 130 S N+ ++ +G +++ + ++ + ++ Sbjct: 68 ILRAFAGSEI------------NITIMVPNGNIPAMVNVANARQWVAANVLPFQQQIKFK 115 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190 + +D ++ +V +Q A++ S + S + + Sbjct: 116 YVCVGNEILASNDNNLISNLVPAMQSLNEALKASNLTYIKVTTPHAFTISYNRNTPSESR 175 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 DQ + I E R + + ++A +++ Sbjct: 176 FTNDQKDIFTKILEFHRQAKSPFMINAYTFFTMDTNNVNYAIFGPSNAITDTNTQQTYTN 235 Query: 251 LDRFSFETVLHALERATAIRT 271 + + A++ Sbjct: 236 MFDAVMDATYSAMKALGYGDV 256 >gi|171318753|ref|ZP_02907894.1| type II secretory pathway component PulD-like protein [Burkholderia ambifaria MEX-5] gi|171096069|gb|EDT40997.1| type II secretory pathway component PulD-like protein [Burkholderia ambifaria MEX-5] Length = 534 Score = 41.6 bits (96), Expect = 0.32, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 78/241 (32%), Gaps = 34/241 (14%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSF 230 + A + K++ N QV + V ++ + Q G + + + Sbjct: 268 TKEAADNIGKLLKQENAISTRQVAITVRTIQIALNRGSQAGMNADVVFNAMHAGLARYAI 327 Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAI---RTLAEPTLTAISGQS 284 + + GG V + F V++AL + T+ + TL + Sbjct: 328 SFTSPTSLATGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVSV 387 Query: 285 ASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 ASF S T SS + + +TT D+ + P V +I L Sbjct: 388 ASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFV---NVLPAVNDHNQIVLAYW 444 Query: 334 TEVSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVLAGLLKDDIQQLK 382 + S+ + S + ++ D T+ L G TIVL G + D Sbjct: 445 ADSSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTIVLYGAITDQADSTT 504 Query: 383 E 383 Sbjct: 505 N 505 >gi|115374949|ref|ZP_01462221.1| hypothetical protein STIAU_3535 [Stigmatella aurantiaca DW4/3-1] gi|310819208|ref|YP_003951566.1| hypothetical protein STAUR_1935 [Stigmatella aurantiaca DW4/3-1] gi|115368076|gb|EAU67039.1| hypothetical protein STIAU_3535 [Stigmatella aurantiaca DW4/3-1] gi|309392280|gb|ADO69739.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 249 Score = 41.2 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%) Query: 69 VLVSDPTKADVVVHS-PRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 V V DP+ A V S + L GK G ++L + +L + Sbjct: 53 VEVEDPSIATAEVLSGSNELLLTGKRPGSTLLLLYAEGKFAVWSLSVA 100 >gi|293372373|ref|ZP_06618757.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f] gi|292632556|gb|EFF51150.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f] Length = 393 Score = 41.2 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 6/211 (2%) Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 + V +P+ A ++ + + G A + K + + +R + + Sbjct: 140 SITVDNPSIAKAAINDKGQIQIESLAPGTATFTVKDRRDKTTELIVKVKKRMVVDNSENI 199 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + + ++++ G T S A L + + N Sbjct: 200 PYLVIGTPATIKILDGN---GGYTCTAGGS--ATYLKCSMSEDGTEVIIEGLKRYRYNNK 254 Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247 + IA +D ++VTI + L+ +++ + GS S S S + G S + S Sbjct: 255 VTIADQDGEKIEVTITAIDDPYLENPSYRYMLAGSYSYQSLS-TSKVGEIMHSADFNLSQ 313 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLT 278 V + +A++ + ++ T Sbjct: 314 LLVKSSTTSSASGYAVQFTGDLGVGSKTNAT 344 >gi|170029653|ref|XP_001842706.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167864025|gb|EDS27408.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 1364 Score = 41.2 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129 V+DP A RT L G+ +G+ +V ++ G+ + ++ + D L L R Sbjct: 617 VADPKIA---TLRGRT--LQGRAMGRTDVQVLSPITGRVIGAREVRVGSDKVSLTRLLVR 671 Query: 130 FIADSNIRVEMVS 142 ++ + + + Sbjct: 672 VVSGLQLSITSDN 684 >gi|3341598|emb|CAA13143.1| z43r [Vibrio cholerae] Length = 166 Score = 41.2 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 182 KKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 ++V L I+ + QV L+ I EV Q G S SS+G + + Sbjct: 111 RQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSG 165 >gi|292492799|ref|YP_003528238.1| NolW domain protein [Nitrosococcus halophilus Nc4] gi|291581394|gb|ADE15851.1| NolW domain protein [Nitrosococcus halophilus Nc4] Length = 270 Score = 41.2 bits (95), Expect = 0.40, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 39/148 (26%), Gaps = 23/148 (15%) Query: 273 AEPTLTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326 + + GQ+A +G S+ D P + Sbjct: 136 DTQQVRILEGQAALLQTGQSIPLADRVWLLQGGRLLTQNSIRYRDVVSGFEVLPR-TNGN 194 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 R+ L I+ ++ ++ T V +P G L G QQ Sbjct: 195 RVTLEIRPYQ----ANLSGQGGGRIGMQTLVTQVSIPFGQWFELGGADGTRQQQ------ 244 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414 +G ++ E IFI Sbjct: 245 ------GIGTVYGTHSRTEELRHIFIRV 266 >gi|283788190|ref|YP_003368055.1| Type IV pilus biogenesis protein [Citrobacter rodentium ICC168] gi|30142048|gb|AAO17808.1| CfcD [Citrobacter rodentium] gi|282951644|emb|CBG91344.1| putative Type IV pilus biogenesis protein [Citrobacter rodentium ICC168] Length = 489 Score = 40.8 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 78/251 (31%), Gaps = 29/251 (11%) Query: 147 LHGMVRTIQDS---QRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNI 190 L G T +S ++++ ++S N + +SS + ++ Sbjct: 197 LTGKTETKFESSFWDDVEDMAKNYISSGNYNIFKDSSVLMVNSRPSEYEALSQALDKYKA 256 Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250 Q + I + ++ +K++ + + + S G S Sbjct: 257 DNSRQFIVTYKIFTLDKNKVKELSAGLKLNFEDGHNTVKIGSSL---LDSLTGGISAGWK 313 Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATS 306 + L AL + T R++ + + + Y + + G + Sbjct: 314 NSNVDINSGLDALYKLTGDRSIQSGSFITRNNMAIPLNMTKSQNYVSGKTRTTDDNGEVN 373 Query: 307 VTTHD----YGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTV 360 V G TP VLS GRI + E + +P+ +A + Sbjct: 374 VEVETSSVVTGTSFIITPRVLSDGRIEVVSGFTKRYLEGIDTYEDVQLPNVSTTEAFNSS 433 Query: 361 ELPSGGTIVLA 371 + G +++A Sbjct: 434 IIMPGDLLMVA 444 >gi|311105342|ref|YP_003978195.1| lipoprotein 1 [Achromobacter xylosoxidans A8] gi|310760031|gb|ADP15480.1| lipoprotein 1 [Achromobacter xylosoxidans A8] Length = 528 Score = 40.8 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 101/299 (33%), Gaps = 44/299 (14%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G+V + ++ +++T + +Y +K + + + V ++T+ Sbjct: 242 SGVVADAVEGATSIVVTDTPEALERVARYLERENKALTRRVRL-----VFEEITVV---A 293 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 + G ++ +++G + A G +G + ++ AL Sbjct: 294 NDATSGGIDWNVVYAAAGAAARLALPGAGAGGGSLDASMARGPFQGT--QAIVSALSTMG 351 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--------------GATSVTTHD-- 311 A+ + + ++ + + Y ST A S++ + Sbjct: 352 AVVRHNKVPILTLNRRPVTHAVRTTFSYIDRVQSTAVPGTTAGGANGSLPAVSISQKEET 411 Query: 312 YGVVLHFTPTVLSPGRIGLRI--QTEVSEPVIGVNAGD--------MPSYRVRKADTTVE 361 G L P + G+I L + V++P+ + G+ + VE Sbjct: 412 VGSFLTLLPDIQEDGQILLSLAYDNAVAQPLKTITFGERGNQVQVQQVTIDGNGTVQQVE 471 Query: 362 LPSGGTIVLAGLLKDDIQQLKEGI-PLLSKIPIL-GALFRNSRFNREETEIFIAATPFL 418 L G I+++G + Q ++ + P L P++ G L + E + T + Sbjct: 472 LRPGQPIIVSGFDRSQDQHDRQRLAPGL---PLIAGGL---DSASTERMTTLVLVTAQV 524 >gi|270016514|gb|EFA12960.1| hypothetical protein TcasGA2_TC001411 [Tribolium castaneum] Length = 724 Score = 40.8 bits (94), Expect = 0.48, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129 VSDP A S L G+++G+ V ++ G+ + +I + D L L + Sbjct: 163 VSDPRIA-----SLHGRILQGRSMGRTEVQVLSPITGRVIGAKEIRVGNDKVGLSRLLVQ 217 Query: 130 FIADSNIRVEM 140 ++ + + Sbjct: 218 VVSGLQLNISP 228 >gi|189242331|ref|XP_969592.2| PREDICTED: similar to CG14446 CG14446-PA [Tribolium castaneum] Length = 728 Score = 40.8 bits (94), Expect = 0.50, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129 VSDP A S L G+++G+ V ++ G+ + +I + D L L + Sbjct: 167 VSDPRIA-----SLHGRILQGRSMGRTEVQVLSPITGRVIGAKEIRVGNDKVGLSRLLVQ 221 Query: 130 FIADSNIRVEM 140 ++ + + Sbjct: 222 VVSGLQLNISP 232 >gi|91089783|ref|XP_967761.1| PREDICTED: similar to CG14446 CG14446-PA, partial [Tribolium castaneum] Length = 1279 Score = 40.8 bits (94), Expect = 0.54, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129 VSDP A S L G+++G+ V ++ G+ + +I + D L L + Sbjct: 623 VSDPRIA-----SLHGRILQGRSMGRTEVQVLSPITGRVIGAKEIRVGNDKVGLSRLLVQ 677 Query: 130 FIADSNIRVEM 140 ++ + + Sbjct: 678 VVSGLQLNISP 688 >gi|157107854|ref|XP_001649969.1| hypothetical protein AaeL_AAEL004880 [Aedes aegypti] gi|108879490|gb|EAT43715.1| conserved hypothetical protein [Aedes aegypti] Length = 1315 Score = 40.8 bits (94), Expect = 0.55, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129 V+DP A RT L G+ +G+ +V ++ G+ + ++ + D + L R Sbjct: 629 VADPKIA---TLRGRT--LQGRAMGRTDVQVLSPITGRVIGAREVRVGSDKVSITRLLVR 683 Query: 130 FIADSNIRVEMVS 142 ++ + + + Sbjct: 684 VVSGLQLSISSDN 696 >gi|297592828|gb|ADI47149.1| carbamoyl-phosphate synthase [Bohepilissus subtilis] Length = 299 Score = 40.8 bits (94), Expect = 0.55, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 72/223 (32%), Gaps = 27/223 (12%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 ++ ++ + + + + ++ P K GG + + G+F G + AL+ Sbjct: 90 IKENLTRMLRYDPAYNIRNNLPRKVLIIGSGGLSIGQAGEFDYSG-------SQAIKALK 142 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 L P + + Q++ + + V + GV+L F Sbjct: 143 EENIKTVLINPNIATV--QTSKGLADKVYFLPLVPEYVEQVIKSERPGGVLLTFGGQTAL 200 Query: 325 PGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV--LAGLLKDDIQ 379 + L+I + ++G + RK + G + LA + Sbjct: 201 NCGVELQISGVFDKYGVKILGTPXQTIIDTEDRKVFSERIAAIGEKVAPSLAAFSVQEAL 260 Query: 380 QLKEGIPLLSKIPI-------LGALFRNSRFNREETEIFIAAT 415 + L P+ LG L S F + E+ + AT Sbjct: 261 DAADK---LGY-PVMVRAAFSLGGL--GSGFADNKEELKLLAT 297 >gi|110801614|ref|YP_698866.1| sugar ABC transporter [Clostridium perfringens SM101] gi|110682115|gb|ABG85485.1| ABC transporter, permease protein [Clostridium perfringens SM101] Length = 317 Score = 40.4 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 14/88 (15%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L +S I + AG + + R SG ++ G + D +P Sbjct: 90 SINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNIRIMQGFIPKD-------VP 137 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414 LLS IP++G LF + + T + I Sbjct: 138 LLSSIPVIGDLFFSKTYAT--TWLVILI 163 >gi|42562448|ref|NP_174452.2| copper amine oxidase, putative [Arabidopsis thaliana] gi|332193263|gb|AEE31384.1| putative copper amine oxidase [Arabidopsis thaliana] Length = 681 Score = 40.4 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 25/209 (11%), Positives = 72/209 (34%), Gaps = 27/209 (12%) Query: 84 PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143 PR ++ ++ G+ I++ + +++ I + L + + ++ + D Sbjct: 87 PRQAFVIARDNGKTREIVLDFSSRAIVSDKIHVGNGYPMLSNDEQEASTELVVKFKPFID 146 Query: 144 TVVLHGMVRTI---------------QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 +V G+ + +++R + L +L + ++ L Sbjct: 147 SVAKRGLNVSEIVFTTSTIGWYGETKAEAERVIRLMPFYLDGTVNMYLRPIEGMTIIVNL 206 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV--SEGGDFS 246 + ++ ++E + + + + S + F + +G F Sbjct: 207 D---------EMKVSEFKDRSVVTMPIANGTEYRISKLNPPFGPTLHNAVLLQPDGPGFK 257 Query: 247 VKG-VLDRFSFETVLHALERATAIRTLAE 274 V G ++ ++E + RA + +LA Sbjct: 258 VDGHIVRWANWEFHISFDVRAGIVISLAS 286 >gi|298371975|ref|ZP_06981965.1| cell surface protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274879|gb|EFI16430.1| cell surface protein [Bacteroidetes oral taxon 274 str. F0058] Length = 558 Score = 40.4 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 3/105 (2%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-VQDVLVSD 73 L VA + + +++ + + I +NK + + D D Sbjct: 8 ILMVCTFVVAFVATGCKKQTPIVDKGNGFKLSKNAVQIEVNKTAKVDIVGDGTYSAASGD 67 Query: 74 PTKADVVVHSPRTMYLFGK-NVGQANVILIGHDGKQMLNLDILIE 117 AD V +T+ + K VG+ + + +I + Sbjct: 68 ANIADAKVEG-KTVVISAKDKVGETVIKVFDAKNNSQKAQEIKVT 111 >gi|229816274|ref|ZP_04446583.1| hypothetical protein COLINT_03326 [Collinsella intestinalis DSM 13280] gi|229808125|gb|EEP43918.1| hypothetical protein COLINT_03326 [Collinsella intestinalis DSM 13280] Length = 2133 Score = 40.4 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 70/192 (36%), Gaps = 27/192 (14%) Query: 35 AVINISDVEIGKGKKISIGLNKVIILQ---VPVDVQ----DVLVSDPTKADVVVHSP--- 84 A + +E+G+ + S+ + + ++ +P D + V +P A VV + Sbjct: 1575 AGVTADAIELGENQT-SLHVGDLAPVRAKVLPQDDRYPYFTVESGNPAVASVVSRTDAAG 1633 Query: 85 -RTMYLFGKNVGQANVIL---IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140 +T Y+ G++ G A + + + + + D LE + + Sbjct: 1634 KQTWYVRGESEGTAKITVKAAVDPSKTAEYEVTVKAGADTKPLEDAIAEAM-------MF 1686 Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 +D + +AV+ + L+ + +++ KV ++ V K Sbjct: 1687 SADAY----TPESYAQLDQAVKEARALLNGNPSKSQILAAANKVEKAISALKMRPVDEKA 1742 Query: 201 TI-AEVRRDILK 211 I E +D +K Sbjct: 1743 LINTEKNKDAVK 1754 >gi|270013603|gb|EFA10051.1| hypothetical protein TcasGA2_TC012225 [Tribolium castaneum] Length = 1243 Score = 40.4 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLNLDILIERDIAHLEMTLRR 129 VSDP A S L G+++G+ V ++ G+ + +I + D L L + Sbjct: 649 VSDPRIA-----SLHGRILQGRSMGRTEVQVLSPITGRVIGAKEIRVGNDKVGLSRLLVQ 703 Query: 130 FIADSNIRVEM 140 ++ + + Sbjct: 704 VVSGLQLNISP 714 >gi|251788943|ref|YP_003003664.1| amino acid adenylation domain-containing protein [Dickeya zeae Ech1591] gi|247537564|gb|ACT06185.1| amino acid adenylation domain protein [Dickeya zeae Ech1591] Length = 2877 Score = 40.4 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 22/99 (22%) Query: 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105 +G++I +G +++ VL++ P A VV + +G + L G D Sbjct: 2443 RGQRIELG-----------EIEQVLLAQPGVAQAVVG--------ARELGGKSARLYGAD 2483 Query: 106 GKQMLNLDI---LIERDIAHLEMTLRRFIADSNIRVEMV 141 +Q++ + DIA L+ L + + + V V Sbjct: 2484 ARQLVAWLVPQAETTLDIAALQQALSQQLPAHMVPVSYV 2522 >gi|256841350|ref|ZP_05546857.1| predicted protein [Parabacteroides sp. D13] gi|256737193|gb|EEU50520.1| predicted protein [Parabacteroides sp. D13] Length = 309 Score = 40.4 bits (93), Expect = 0.62, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 13/124 (10%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGL--------N 55 L++ M + ++ S+A + +I GKKI I + Sbjct: 40 LKKCMKIKMILIALTALLSLASCGDDDSGIQLTQDEIIGDINTGKKIVITSLTTYTESSS 99 Query: 56 KVIILQVPVDVQDVLVSDPTKADVVVHSP---RTMYLFGKNVGQANVILIGHDGKQMLNL 112 KV + + SD + A V + + +Y+ G +VG + + DG L Sbjct: 100 KVNVNGAKGKISATS-SDESIAKVSCSTNEAEKEIYVSGVSVGNTTITITDSDGNT-AVL 157 Query: 113 DILI 116 + + Sbjct: 158 KVEV 161 >gi|262383579|ref|ZP_06076715.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294477|gb|EEY82409.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 327 Score = 40.4 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 13/104 (12%) Query: 27 PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV----SDPTKADVVVH 82 P +N++ + +G+ + + I P D D V SDP ADV Sbjct: 162 PAPIPVTEVTLNLTSATLERGESLRL-----IATVSPADADDTSVRWSTSDPAIADV--- 213 Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 +T + + G A + +DG + + ++ + +E Sbjct: 214 -DQTGLVLALSAGNATITATTNDGGKTASCEVTVGELPNSIEAA 256 >gi|192359225|ref|YP_001980651.1| RHS Repeat family [Cellvibrio japonicus Ueda107] gi|190685390|gb|ACE83068.1| RHS Repeat family [Cellvibrio japonicus Ueda107] Length = 3749 Score = 40.4 bits (93), Expect = 0.65, Method: Composition-based stats. Identities = 49/334 (14%), Positives = 112/334 (33%), Gaps = 20/334 (5%) Query: 68 DVLVSDPTKADVVVHSPRTMYL--FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 LV + A + RT+ + G A + + DG+ + ++ + + Sbjct: 921 TALVPNGNIALGGSGANRTVNVTPIANVHGTATITVTVSDGQLTASRSFVVTVNPVNDAP 980 Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKV 184 T+ + G + T + S T L + SS+ + Sbjct: 981 TISAIANITIDEDASTGVRAFTIGDIDTPVANLIVSATSSNTTLVPNTNIVLGGSSTSRT 1040 Query: 185 MNLLNIA-GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 +N+ +A G T+ VT+++ + + + ++ + P+ S A+ + G Sbjct: 1041 INITPVANGYGTATITVTVSDGQLNTSRSFVV--TVNSVNDAPTISTMANITIDEDTSTG 1098 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT---AISGQSASFT---SGGQHLYKT 297 + + D + + L ++ + + + + ++ + T +G T Sbjct: 1099 ARAFT-ISDIDTSVSSLTVTATSSNTTLVPNTNIALGGSGANRTVNITPVANGYGTATIT 1157 Query: 298 VSSSTGATSVTTHDYGVV--LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SYRV 353 V+ S G S + V ++ PT+ + I + T + D P + + Sbjct: 1158 VTVSDGQLSTSRSFVVTVSPINDAPTISTIANITIDEDTSTGVRAFTIGDIDTPIANLTI 1217 Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 + + L IVL G + P+ Sbjct: 1218 SASSSNTALVPNTNIVLGG---SSTSRTINITPV 1248 >gi|326387091|ref|ZP_08208701.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM 19370] gi|326208272|gb|EGD59079.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM 19370] Length = 1172 Score = 40.4 bits (93), Expect = 0.67, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 15/86 (17%) Query: 372 GLLKDDIQQLKEGIPL-LSKIPILGALFRNSRFNREETEIF------IAATPF---LVKP 421 GL + +L +P L +IPILG F + ++ E+ + PF ++ Sbjct: 990 GLSGAETIRLIRRLPGRLGRIPILG--FTAYSNSDKQRELVEAGGGDVIVKPFTRATIRD 1047 Query: 422 VAMRDLSRP---DDHYSVEDDAKAFF 444 R ++ P D + ++ + F Sbjct: 1048 AIARAIATPSCGGDKAAGSEEFERFL 1073 >gi|154505040|ref|ZP_02041778.1| hypothetical protein RUMGNA_02550 [Ruminococcus gnavus ATCC 29149] gi|153794519|gb|EDN76939.1| hypothetical protein RUMGNA_02550 [Ruminococcus gnavus ATCC 29149] Length = 317 Score = 40.4 bits (93), Expect = 0.70, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 17/99 (17%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL--KEG 384 I ++ +S + + A + R ++ G+ + Sbjct: 88 SINMKADQTISGTALNLFAPAFAIFTAR--------------MIQGMQQIQFTDTFHINK 133 Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIA-ATPFLVKPV 422 +P+L IP++G LF + + I I F++K Sbjct: 134 VPVLGDIPVIGDLFFQNCYISTYIGILIFAVAAFVIKNT 172 >gi|168700295|ref|ZP_02732572.1| hypothetical protein GobsU_12255 [Gemmata obscuriglobus UQM 2246] Length = 544 Score = 40.0 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 62/198 (31%), Gaps = 37/198 (18%) Query: 248 KGVLDRFSFETVLHALERA-TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---SSSTG 303 GV +L AL R + L P + SGQ + + T G Sbjct: 335 SGVTLTARESLMLKALLRHHPMVEILFRPQVQLQSGQMGHVGAWQELPVVTGLEGEVRDG 394 Query: 304 ATSV----TTHDYGVVLHFTPTVLSPGRIGLRIQ---TEVSEPVIGVNA----------G 346 T G L PTV + G++ +RI+ TE+ PV + G Sbjct: 395 KTVYVAKSEPVSLGHKLRILPTVEADGQVTIRIEGAYTELERPVSSTTSLDRLAAPTPRG 454 Query: 347 DMP----SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 D+P S + T + G T V + +P ++ + Sbjct: 455 DLPLELGSVNIHNFQATARVSDGQTAVF---------RSAAPVPTAG---VVVHPMKAPA 502 Query: 403 FNREETEIFIAATPFLVK 420 + E+ T +V+ Sbjct: 503 KSEPMPELLWVLTSHVVR 520 >gi|297592826|gb|ADI47148.1| carbamoyl-phosphate synthase [Bohepilissus subtilis] Length = 299 Score = 40.0 bits (92), Expect = 0.76, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 72/223 (32%), Gaps = 27/223 (12%) Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264 ++ ++ + + + + ++ P K GG + + G+F G + AL+ Sbjct: 90 IKENLTRMLRYDPAYNIRNNLPRKVLIIGSGGLSIGQAGEFDYSG-------SQAIKALK 142 Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324 L P + + Q++ + + V + GV+L F Sbjct: 143 EENIKTVLINPNIATV--QTSKGLADKVYFLPLVPEYVEQVIKSERPGGVLLTFGGQTAL 200 Query: 325 PGRIGLRIQ---TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV--LAGLLKDDIQ 379 + L+I + ++G + RK + G + LA + Sbjct: 201 NCGVELQISGVFDKYGVKILGTPIQTIIDTEDRKVFSERIAAIGEKVAPSLAAFSVQEAL 260 Query: 380 QLKEGIPLLSKIPI-------LGALFRNSRFNREETEIFIAAT 415 + L P+ LG L S F + E+ + AT Sbjct: 261 DAADK---LGY-PVMVRAAFSLGGL--GSGFADNKEELKLLAT 297 >gi|315043786|ref|XP_003171269.1| hypothetical protein MGYG_07270 [Arthroderma gypseum CBS 118893] gi|311345058|gb|EFR04261.1| hypothetical protein MGYG_07270 [Arthroderma gypseum CBS 118893] Length = 1011 Score = 40.0 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 86/260 (33%), Gaps = 19/260 (7%) Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183 T+ + S I T+ L G I + A ++ET+ + ++ + Sbjct: 335 TTTVTSTLPASTIT--QSGTTITLPGSTTVITSTIPASTITETYTEPGTVSTVTSTPPPE 392 Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243 +TL + V + Q T + G + + +++ Sbjct: 393 ---------THVITLPASTITVTSTLPASTITQSGTTITLPGSTTVITSTIPASTITQ-- 441 Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303 ++ G + + L A T TL T+T ++ T G T + Sbjct: 442 TYTEPGTVSTETHVITLPA-STITMTSTLPASTITQSG---STITLPGSTTVITSTIPAS 497 Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363 + T + G V T + PG + T I +P+ + ++ TTV +P Sbjct: 498 TITQTYTESGTVTTDTQVITLPGSTVTMVTTL--PGTITTVTQTLPATTITESGTTVTIP 555 Query: 364 SGGTIVLAGLLKDDIQQLKE 383 + T++ + L I Q Sbjct: 556 ASTTVITSTLPASTITQTLT 575 >gi|166368218|ref|YP_001660491.1| hypothetical protein MAE_54770 [Microcystis aeruginosa NIES-843] gi|166090591|dbj|BAG05299.1| unknown protein [Microcystis aeruginosa NIES-843] Length = 710 Score = 40.0 bits (92), Expect = 0.84, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 26/135 (19%) Query: 313 GVVLHFTPTVLSPG-RIGLRIQ-----TEVSEPVIGVNAGD-----MPSYRVRKADTTVE 361 GV + TP+VL L I T+ EPV G + + T V Sbjct: 468 GVSMEITPSVLRNSASAELDINFTTGPTKDKEPVPDQFTGTTRLRPLSRIKQNTVSTRVY 527 Query: 362 LPSGGTIVLAGLLKDDIQQLKEG----IPLLSKI--------PILGALFRNSRFNREETE 409 + T+ + L + Q ++G IP++ I PI+G LF + Sbjct: 528 VN---TLDIFALSTFNSQTTEDGGRTYIPVIGTIWQGVFSGVPIIGQLFSWKNSPQSVQH 584 Query: 410 IFIAATPFLVKPVAM 424 I T + P AM Sbjct: 585 QSIVLTNSFIVPTAM 599 >gi|293371367|ref|ZP_06617804.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f] gi|292633727|gb|EFF52282.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f] Length = 281 Score = 40.0 bits (92), Expect = 0.90, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 72/227 (31%), Gaps = 27/227 (11%) Query: 11 MMSIFLFSSNPSVAKLPPIKEA----NAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66 + L S P +A + +SI + ++ V Sbjct: 9 CLLFILLCSLPVFYSCSDEADAFYLYEYWEVMFDPEPPISETSLSITGGTKLGIKGGVAP 68 Query: 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 ++D A V + + +G ++++ DG+ + ++ Sbjct: 69 YTAEIADGQIATAYVDENNDIQISSIKLGSTSLMVKDADGRII--------------KIG 114 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L+ + V V + G+ ++ D Q+ +L + + +++ ++ + Sbjct: 115 LKVVNGKQSFSVNSVEARI--TGIDESLLDEQQKEKL--EAVKKKIKDEAGIQATGGIAF 170 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 + KVTI +D +I S + S SG + + Sbjct: 171 SYDQKSSG----KVTIVT-SKDNAPKIEGSFSRSTSESGTTFQITIN 212 >gi|325289184|ref|YP_004265365.1| S-layer domain-containing protein [Syntrophobotulus glycolicus DSM 8271] gi|324964585|gb|ADY55364.1| S-layer domain-containing protein [Syntrophobotulus glycolicus DSM 8271] Length = 1618 Score = 40.0 bits (92), Expect = 0.91, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 7/90 (7%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV---VVHSPRTMYL 89 + N V G ++ L + + D+ V++ + A V V + T+ + Sbjct: 987 PSVSANTLTVNKGATASFTVSLGQGV---SAATAADITVANGSIASVSTGRVTASGTVTV 1043 Query: 90 FGKNVGQANVIL-IGHDGKQMLNLDILIER 118 G G +I+ + + N+ + + Sbjct: 1044 TGLAAGTTGIIVTFHDSAQTVKNIAVTVNA 1073 >gi|325271166|ref|ZP_08137720.1| type II and III secretion system protein [Pseudomonas sp. TJI-51] gi|324103699|gb|EGC00992.1| type II and III secretion system protein [Pseudomonas sp. TJI-51] Length = 53 Score = 40.0 bits (92), Expect = 0.91, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414 ++ I+L GL ++ G+ L K LFR++ +EI + Sbjct: 1 QMRDREVILLGGLTEEKTSDNSTGLSFLPK------LFRSNTSEASNSEILLVI 48 >gi|159039589|ref|YP_001538842.1| transport-associated [Salinispora arenicola CNS-205] gi|157918424|gb|ABV99851.1| transport-associated [Salinispora arenicola CNS-205] Length = 213 Score = 40.0 bits (92), Expect = 0.92, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 28/151 (18%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD--VLVSDPTK----------- 76 A+ + E ++I I +++ + V + V V++ Sbjct: 58 AVADELEVRPPGDERYTDREIGIAVSRALEWDSFVPAERLDVTVANGWVILRGDVEFGWQ 117 Query: 77 ---ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 A+ V R + G N++ G ER ++ L R + Sbjct: 118 RRTAEAEVRRLRGV------RGVTNLVAARPAGAADG------ERIRREVQRALSRGLGT 165 Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164 + V++ TVVL+G+VR+ + +A + Sbjct: 166 ERVTVDVDGSTVVLNGVVRSWWERDQAERTA 196 >gi|237724111|ref|ZP_04554592.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229437571|gb|EEO47648.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 281 Score = 40.0 bits (92), Expect = 0.95, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 18/121 (14%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64 ++ F + FL ++ P+ N I D K++ + L I +V Sbjct: 11 KKLFGLLWMFFLVATLPAC--------HNDDDGKIIDTPEFSAKELEVPLGGTGITEVLA 62 Query: 65 DVQDVL-VSDPTKADVVVHSPRT-------MYLFGKNVGQANVILIGH--DGKQMLNLDI 114 + + +L V+DP A + S +Y+ G G+ + L + K +L + + Sbjct: 63 NDEVILEVTDPDIATAALISETNAYTPKRYVYVAGVKKGETTLQLTDKLTEKKIILPITV 122 Query: 115 L 115 Sbjct: 123 T 123 >gi|289449367|ref|YP_003474976.1| branched-chain amino acid ABC transporter permease [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289183914|gb|ADC90339.1| branched-chain amino acid ABC transporter, permease protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 317 Score = 39.6 bits (91), Expect = 0.96, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 12/72 (16%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I ++ +S + + A + R+ +T ++P T + + IP Sbjct: 88 SINMKADQTISGTALNMFAPAFVIFIAREINTIQQIPFEDTFHI------------DRIP 135 Query: 387 LLSKIPILGALF 398 L+ IP+LG +F Sbjct: 136 FLADIPVLGPMF 147 >gi|226311362|ref|YP_002771256.1| extracellular serine protease precursor [Brevibacillus brevis NBRC 100599] gi|226094310|dbj|BAH42752.1| putative extracellular serine protease precursor [Brevibacillus brevis NBRC 100599] Length = 3487 Score = 39.6 bits (91), Expect = 0.97, Method: Composition-based stats. Identities = 38/306 (12%), Positives = 88/306 (28%), Gaps = 55/306 (17%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 S+P+ A V + G G A + + + + + + I Sbjct: 2633 SNPSVAQVSSQG----VVTGIKAGTATITVSYDGKNASSQITV---------QGATIQEI 2679 Query: 132 ADSNIRVEMVSD---TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188 + ++V +V+ + + + +S+ + S A+ S ++ L Sbjct: 2680 KGTPVQVSLVAGGTQQLSVTATYSNGAEEN----ISKQAVYSSSNANVASVDSGGLITAL 2735 Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 + G QVT+ G S + VS + Sbjct: 2736 S-PGATQVTVS--------------------YGGQSTIIPVTVSGNAISLVSLAVTPATV 2774 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 + + + + A + + T S Q A + G +++ + +V+ Sbjct: 2775 SIGKGANQQLEVKATYSDNSQTIVTNQ-ATYQSSQPAIASVGASGFVTGMAAGSATVTVS 2833 Query: 309 T--HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 V + T Q V + + +M + ++ T G Sbjct: 2834 FGGKTVTVPVQVT-----------ETQEPVQSLSVTPVSLNMLVGKTQQLQVTATYKDGK 2882 Query: 367 TIVLAG 372 + ++G Sbjct: 2883 NMDVSG 2888 >gi|325107283|ref|YP_004268351.1| peptidase M56 BlaR1 [Planctomyces brasiliensis DSM 5305] gi|324967551|gb|ADY58329.1| peptidase M56 BlaR1 [Planctomyces brasiliensis DSM 5305] Length = 789 Score = 39.6 bits (91), Expect = 0.99, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 87/280 (31%), Gaps = 38/280 (13%) Query: 129 RFIADSNIRVEMVSDTVVLHG-MVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182 R ++ + L G T + + ++ + N + Sbjct: 481 RALSKKQAVISSADSGDALRGRTTGTEPEISEDLPTAQVHWDGERWSVIVNGPPEIHRQL 540 Query: 183 -KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGK 237 + + N +G QV ++ I + D+++ G S SS P+K+ Sbjct: 541 SETVRAFNRSGYGQVAVETRIYMSQHDVMEAAGLSWDRIQSGRSESSLPAKNSEDRIDEI 600 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE------------PTLTAISGQSA 285 S + V ++ ++ L+ +R + P LT +GQS Sbjct: 601 TNSLNESNVLSNVSRQYHSPVMIAVLDNDQLLRFIKSAFIYVKPENMFAPKLTLRNGQSG 660 Query: 286 SFTSGGQHLYKT-VSSSTGAT---SVTTHDYGVVLHFTPTVLSPGR-------IGL---- 330 G Q + V+ G V + G + + + + Sbjct: 661 RLYDGVQRPFVVGVNQQEGGNLKPDVRIIEEGTSVKMRLDLTEDHTAVDLVAAVEMSKIS 720 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370 +QT ++ +P+ +T+ +L G T++L Sbjct: 721 DVQTFTTQARGQRVTVQVPNVDKIHVETSSQLTDGETLLL 760 >gi|110799128|ref|YP_696263.1| ABC transporter, permease protein [Clostridium perfringens ATCC 13124] gi|168206804|ref|ZP_02632809.1| ABC transporter, permease protein [Clostridium perfringens E str. JGS1987] gi|168209351|ref|ZP_02634976.1| ABC transporter, permease protein [Clostridium perfringens B str. ATCC 3626] gi|168213546|ref|ZP_02639171.1| ABC transporter, permease protein [Clostridium perfringens CPE str. F4969] gi|168217678|ref|ZP_02643303.1| ABC transporter, permease protein [Clostridium perfringens NCTC 8239] gi|169342761|ref|ZP_02863797.1| ABC transporter, permease protein [Clostridium perfringens C str. JGS1495] gi|182626038|ref|ZP_02953800.1| ABC transporter, permease protein [Clostridium perfringens D str. JGS1721] gi|110673775|gb|ABG82762.1| ABC transporter, permease protein [Clostridium perfringens ATCC 13124] gi|169299018|gb|EDS81090.1| ABC transporter, permease protein [Clostridium perfringens C str. JGS1495] gi|170661774|gb|EDT14457.1| ABC transporter, permease protein [Clostridium perfringens E str. JGS1987] gi|170712523|gb|EDT24705.1| ABC transporter, permease protein [Clostridium perfringens B str. ATCC 3626] gi|170714913|gb|EDT27095.1| ABC transporter, permease protein [Clostridium perfringens CPE str. F4969] gi|177908650|gb|EDT71166.1| ABC transporter, permease protein [Clostridium perfringens D str. JGS1721] gi|182380276|gb|EDT77755.1| ABC transporter, permease protein [Clostridium perfringens NCTC 8239] Length = 317 Score = 39.6 bits (91), Expect = 0.99, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 14/88 (15%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L +S I + AG + + R SG ++ G + D +P Sbjct: 90 SINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNIRIMQGFIPKD-------VP 137 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414 +LS IPI+G LF + + T + I Sbjct: 138 VLSSIPIIGDLFFSKTYAT--TWLVILI 163 >gi|198459322|ref|XP_001361339.2| GA20669 [Drosophila pseudoobscura pseudoobscura] gi|198136652|gb|EAL25917.2| GA20669 [Drosophila pseudoobscura pseudoobscura] Length = 1857 Score = 39.6 bits (91), Expect = 1.00, Method: Composition-based stats. Identities = 58/308 (18%), Positives = 118/308 (38%), Gaps = 41/308 (13%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV-------SD 73 PS + + + +V+++ VE + + L ++ VD Q++ V + Sbjct: 959 PSHLSISVVGIGSISVVSMDRVERANSIEAIVQLFDTNDNELHVDPQNLAVYDLSEVVFN 1018 Query: 74 PTKADVVV-----HSPRTMY--LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 P +V + P + + GKN+G+ ++ G Q ++ + ++ + A + + Sbjct: 1019 PNILNVRLDMQHNLRPGQIRYSITGKNIGETKIVFQSGKGSQQVSSEPIVVQVFAPIRLY 1078 Query: 127 LRR--FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 R + S+I++ ++ T++ Q A S + A++ + K Sbjct: 1079 PRDSTLLVGSSIQIYSQGGPQPNTNLIYTVEKEQVATMSSAIV---TAHRLGASNITGKC 1135 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + + G+D+V + TI EVR LK + + + SG A G+ D Sbjct: 1136 LMKNPVTGKDEVVSQDTI-EVRVAALKGVEIRTPLVRIRSGAV--MPATLWGQP-----D 1187 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASF--TSGGQHLYKTVSS 300 FS VL LE T+++P + I A SG + + Sbjct: 1188 FS----------PMVLGTLEDMQITWTVSQPGIVEIFNVLTEAGIEYQSGDLISVRVRAL 1237 Query: 301 STGATSVT 308 + G ++T Sbjct: 1238 NPGKVTIT 1245 >gi|326430749|gb|EGD76319.1| carbamylphosphate synthetase 1 [Salpingoeca sp. ATCC 50818] Length = 1560 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 12/143 (8%) Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 GG + + G+F G + AL+ L P + + Q+A + Sbjct: 447 LILGSGGLQIGQAGEFDYSG-------SQAIKALKEKGIKSVLVNPNIATV--QTAEGLA 497 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR---IQTEVSEPVIGVNAG 346 +L G+ L F + L + + V+G + Sbjct: 498 DQVYLMPIEPEFVQEIIAKERPDGIFLQFGGQTALNCGVELDRNGVLAQYGVRVLGTSVN 557 Query: 347 DMPSYRVRKADTTVELPSGGTIV 369 + + R+ L G +I Sbjct: 558 SIIATEDREIFAQKLLDIGESIA 580 >gi|172064588|ref|YP_001812238.1| type II secretory pathway component PulD-like protein [Burkholderia ambifaria MC40-6] gi|171998073|gb|ACB68989.1| type II secretory pathway component PulD-like protein [Burkholderia ambifaria MC40-6] Length = 536 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 90/277 (32%), Gaps = 44/277 (15%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-FAA 232 + A + K++ N QV + V ++ + G + ++ + +A Sbjct: 270 TKEAADNIGKLLQHENAISTRQVAVTVRTIQISLSKGSEAGANADVVFNAMHAGLARYAI 329 Query: 233 DFGGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAI---RTLAEPTLTAISGQS 284 F G SV + R ++AL + T+ + TL + Sbjct: 330 SFASPTSLATGGGSVGVSVLRPDAPFSGTNAAINALNKYGRTVQDNTMTKMTLNGLPVSV 389 Query: 285 ASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 ASF S + S+ T + +TT D+ + P V +I L Sbjct: 390 ASFQSDDYLRSTSPSAGTLNATSGGVPGLTPGTITTGDFV---NVLPAVNDHNQIVLAYW 446 Query: 334 TEVSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVLAGLLKDDIQQLK 382 + S+ + + S + ++ D T+ L G T+VL G + D Sbjct: 447 ADSSKLNGPFTSAGVGSGQTQQQIQLAHTIGTKDDQTIALSDGQTVVLYGAMTDHADSTT 506 Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +G L +N+ +T I +V Sbjct: 507 NA--------GIGGL--TGSWNKSKTFQIIMLKATVV 533 >gi|332878081|ref|ZP_08445811.1| carbohydrate binding module [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684043|gb|EGJ56910.1| carbohydrate binding module [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 441 Score = 39.6 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 10/86 (11%) Query: 73 DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132 DP ADV VH + K+ G +++ D K+ + +D+ A +++ Sbjct: 52 DPEIADVDVHG----MVTAKSKGNTRIVVSSGDNKEYVEVDVE-----APASKSVQAHAG 102 Query: 133 DSNIRVEMVSDT-VVLHGMVRTIQDS 157 ++ E+V D V V + D Sbjct: 103 KGRVQFEVVIDNEYVQTVKVECVTDH 128 >gi|332878783|ref|ZP_08446498.1| bacterial group 2 Ig-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683134|gb|EGJ56016.1| bacterial group 2 Ig-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1012 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 31/77 (40%) Query: 47 GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106 + G N + + + S+ A + T+ +FGK G A +++ ++ Sbjct: 654 AVTLKKGENVQVNITSGTGSYTLATSNAYIATASLVKMNTITVFGKGKGTAVIVVTDNES 713 Query: 107 KQMLNLDILIERDIAHL 123 + ++ + ++ + + Sbjct: 714 GEKKSITVNVQASASDI 730 >gi|288559335|ref|YP_003422821.1| adhesin-like protein [Methanobrevibacter ruminantium M1] gi|288542045|gb|ADC45929.1| adhesin-like protein [Methanobrevibacter ruminantium M1] Length = 3053 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 94/311 (30%), Gaps = 22/311 (7%) Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127 +V+V + T + V SP K+ V L +DGK + N D+ + + + T Sbjct: 2533 EVVVYNNTVTETVYLSPNATISLSKSGNDVLVSLTDNDGKAIANADLDVL--VNGAKSTA 2590 Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187 + + TVV+ ++ N++ + +N Sbjct: 2591 KTNAKGEATIAINGNATVVVS---YKDANNITVTSSITVVNETETVVIEKNNTIIEYVNQ 2647 Query: 188 LNIAGEDQVTLKV----TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--KFVSE 241 + V+L + +AEV + + + P D G E Sbjct: 2648 -TVPPNATVSLSLVDGKVVAEVTDGDGVPLANKLLAVTVNGAPKLGAETDANGIYSIPVE 2706 Query: 242 GGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G V D + + + L + + T+ Q+ + V Sbjct: 2707 GNATVVVSCTDNNGVTVSSSITVLNNSETVVVEKNNTIVEYVNQTVYVPVVSNSSFDIVG 2766 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADT 358 G +++ + G P +S + L + S N +P+ + Sbjct: 2767 DENGISAILLDEDG-----KP--ISGAVVELDVNGAKSNITSDKNGEIVIPTDKNGTITM 2819 Query: 359 TVELPSGGTIV 369 T +G ++ Sbjct: 2820 TYTDENGAKLI 2830 >gi|260587136|ref|ZP_05853049.1| ABC transporter, permease protein [Blautia hansenii DSM 20583] gi|331082915|ref|ZP_08332036.1| hypothetical protein HMPREF0992_00960 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542507|gb|EEX23076.1| ABC transporter, permease protein [Blautia hansenii DSM 20583] gi|330400056|gb|EGG79709.1| hypothetical protein HMPREF0992_00960 [Lachnospiraceae bacterium 6_1_63FAA] Length = 317 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 19/46 (41%) Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 ++ + +P+L IP++G LF + + I I V Sbjct: 123 IQFTDTFQIDKVPVLGDIPVIGPLFFQNCYITTYIGILIFLVAAFV 168 >gi|32475179|ref|NP_868173.1| signal peptide [Rhodopirellula baltica SH 1] gi|32445720|emb|CAD78451.1| hypothetical protein-signal peptide and transmembrane prediction [Rhodopirellula baltica SH 1] Length = 215 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 4/103 (3%) Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 +SA + + S +T + + + L P G + + + G Sbjct: 82 ESARLMVQHELSVTSGSRVNQSTKMDDTTFKLNLEVQP--ADQGSYTFHVTSSLETLAPG 139 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + + RK D+ +L G + VL GL + ++ + Sbjct: 140 KDIARRTAI--RKVDSAFKLSPGTSFVLTGLERSGRERAITQV 180 >gi|160880176|ref|YP_001559144.1| inner-membrane translocator [Clostridium phytofermentans ISDg] gi|160428842|gb|ABX42405.1| inner-membrane translocator [Clostridium phytofermentans ISDg] Length = 319 Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 7/73 (9%) Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387 I + +S VI + A + ++ ++ + + VL + + + IP+ Sbjct: 88 IRFKANQVISGVVINILALSLTTFLTKQINRGLFNAPSDKFVLG--VSNKLT-----IPV 140 Query: 388 LSKIPILGALFRN 400 LS+IP++GA+F+N Sbjct: 141 LSEIPVIGAIFKN 153 >gi|223985201|ref|ZP_03635286.1| hypothetical protein HOLDEFILI_02592 [Holdemania filiformis DSM 12042] gi|223962818|gb|EEF67245.1| hypothetical protein HOLDEFILI_02592 [Holdemania filiformis DSM 12042] Length = 1122 Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 19/141 (13%) Query: 54 LNKVIILQVPVDVQDVLV---SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD----- 105 +N+ L + +V+D ++ +DP+ D + + GK G + + + Sbjct: 984 VNEPTKLHLDRNVEDQIIWNIADPSILD---LDEENLEITGKKPGITKLTAMMNGISSTL 1040 Query: 106 GKQMLNLDILIERDIA--HLEMTLRRFIADSNIRV------EMVSDTVVLHGMVRTIQDS 157 + ++D+ + I + + IRV E V+D V L + Sbjct: 1041 SVTVYSIDVNSKLSIRVEDYQSAGLEIGEERQIRVVGSIGQEEVNDRVTLTSSNPKVAVI 1100 Query: 158 QRAVELSETFLSQSGRNQYAN 178 A +L L + Sbjct: 1101 DEAGKLKAIGLGTTTITAAVK 1121 >gi|330814465|ref|YP_004362640.1| type II secretory pathway component PulD-like protein [Burkholderia gladioli BSR3] gi|327374457|gb|AEA65808.1| type II secretory pathway component PulD-like protein [Burkholderia gladioli BSR3] Length = 531 Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 77/241 (31%), Gaps = 34/241 (14%) Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ------IGFQHSITGSSSGPS 227 + A + K++N N QV + V ++ + Q + F G + Sbjct: 265 TKEAADNIGKLLNHENAISTRQVAITVRTLQIALNKGSQAGANADVVFNAMHAGLARYAV 324 Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS--- 284 + G ++ V++AL + T ++G Sbjct: 325 SFTSPTSLASGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVAI 384 Query: 285 ASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGLRI- 332 ASF S T SS + + +TT D+ + P V +I L Sbjct: 385 ASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFV---NVLPAVNDHNQIVLAYW 441 Query: 333 --QTEVSEPVIGVNAGDMPSYRVRKA--------DTTVELPSGGTIVLAGLLKDDIQQLK 382 ++++ P V AG + + + D T+ L G TIVL G + D Sbjct: 442 ADSSKLNGPFTSVGAGSGQTQQQIQLAHTVGSKDDQTIALSDGQTIVLYGAITDQADSTT 501 Query: 383 E 383 Sbjct: 502 N 502 >gi|260949951|ref|XP_002619272.1| hypothetical protein CLUG_00431 [Clavispora lusitaniae ATCC 42720] gi|238846844|gb|EEQ36308.1| hypothetical protein CLUG_00431 [Clavispora lusitaniae ATCC 42720] Length = 1132 Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 15/123 (12%) Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 ++ G++ SK GG + + G+F G + AL+ A L P Sbjct: 41 KNGAQGATVDVSKVLVIGSGGLSIGQAGEFDYSG-------SQAIKALKEANKTSILVNP 93 Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + Q++ + + G++L F G+ GL + + Sbjct: 94 NIAT--NQTSHALADEIYYLPVTPEYVTYIIERERPDGILLTF------GGQTGLNVGVQ 145 Query: 336 VSE 338 + + Sbjct: 146 LDK 148 >gi|332025599|gb|EGI65761.1| Transmembrane protein 132C [Acromyrmex echinatior] Length = 1505 Score = 39.3 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 8/115 (6%) Query: 47 GKKISIGLNKVIILQVPVDVQDVL-VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH- 104 ++S +N+ L+V V +L VSDP A + R + G+ VG+ V ++ Sbjct: 761 SGRVSYFVNRRTWLRVTDLVAGMLRVSDPRIA--TLLQGR--LVQGRGVGRTEVQVLSPI 816 Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159 G+ + +I + D + R ++ + + DT + +G V ++R Sbjct: 817 TGRVIGAKEIRVGNDRVSVTRLSVRVVSGLQLSISP--DTAIENGYVAETSVTRR 869 >gi|242280968|ref|YP_002993097.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Desulfovibrio salexigens DSM 2638] gi|242123862|gb|ACS81558.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Desulfovibrio salexigens DSM 2638] Length = 770 Score = 39.3 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 49/323 (15%), Positives = 95/323 (29%), Gaps = 45/323 (13%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV-LHGM 150 KN+ + DG+ + ++ I D+ + +R I ++NI + + + + Sbjct: 445 KNIMVSTTPFYDMDGQMLGSVAIWF--DMTEIRTQ-QRMIEENNIMISEAAASATEVSNQ 501 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210 V + ++ A E + S + M+ +N T+ EV R+ Sbjct: 502 VSSFAEALAAQ--VEQSSRGAEEQSVMASEAATAMDEMN----------STVLEVARNAS 549 Query: 211 KQIGFQH-----------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 S S+ D G ++ GV+ Sbjct: 550 SAADLALESQKKAGEGERMVANAVSTITKVRAQSEQLQEDMSDLGKQAEGIGNIMGVISD 609 Query: 254 FSFETVLHALERA-----------TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 + +T L AL A E A +A+ G S+ Sbjct: 610 IADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTMTATLEVGDYISNIQASARK 669 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 + ++ T + G + I +VSE V + S A + Sbjct: 670 NIENTE-KSTEAIMDVTDLINQSGEVLKDIVDKVSETNDQVRSIATASEEQSAASEQISR 728 Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385 +G +AG + + E + Sbjct: 729 STGEINSIAGETAQAMNESAEAV 751 >gi|116333124|ref|YP_794651.1| alpha-xylosidase YicI [Lactobacillus brevis ATCC 367] gi|116098471|gb|ABJ63620.1| Alpha-glucosidase, family 31 of glycosyl hydrolase [Lactobacillus brevis ATCC 367] Length = 762 Score = 39.3 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 8/102 (7%) Query: 60 LQVPVDVQ--DVLVSDPTK--ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 L +PV + +L+ +P AD ++L+ + G +V ++ GK + Sbjct: 662 LDLPVLARENTILLRNPKAVHADYDFTKDLDIHLYDMHEGTTSVAVVDQKGKDAGK--VT 719 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDT--VVLHGMVRTIQ 155 ++R L++T ++ I + T V L+G TI+ Sbjct: 720 VDRTGNELKVTTTGLNGNATIYIHENGKTTQVTLNGAATTIK 761 >gi|162455131|ref|YP_001617498.1| hypothetical protein sce6849 [Sorangium cellulosum 'So ce 56'] gi|161165713|emb|CAN97018.1| hypothetical protein predicted by Glimmer/Critica [Sorangium cellulosum 'So ce 56'] Length = 1349 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 41/134 (30%), Gaps = 26/134 (19%) Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302 G V G +F + + I T A P TA G +A+ + G+ L + Sbjct: 340 GRVLVTGGWSDGTFLASVELFDPREGIWTTARPMSTARYGHTATLLTDGRVLVAGGIGAA 399 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 G PTV E+ +P VR+ T L Sbjct: 400 GEV--------------PTV------------ELFDPATNTWTPARSMSTVRRGHTATLL 433 Query: 363 PSGGTIVLAGLLKD 376 G +V GL D Sbjct: 434 DDGQVLVTGGLTSD 447 >gi|212550854|ref|YP_002309171.1| carbamoyl-phosphate synthase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549092|dbj|BAG83760.1| carbamoyl-phosphate synthase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 1449 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 57/186 (30%), Gaps = 20/186 (10%) Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 G + E G+F G L AL+ L P + + Q++ + Sbjct: 386 LLLGSGALKIGEAGEFDYSG-------SQALKALKEEGIYTVLINPNIATV--QTSEGVA 436 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR---IQTEVSEPVIGVNAG 346 + G++L F + L I + + V+G Sbjct: 437 DKIYFLPVTPFFVEKVIEKEKPEGILLSFGGQTALNCGVFLHQSGIFEKYNVNVLGTTVQ 496 Query: 347 DMPSYRVRKAD----TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK----IPILGALF 398 + R+ + + S +I + + + G P++ + + LG+ F Sbjct: 497 SIIDTEDRELFVKKLNQINVKSIKSIAVGTIKDARRAAEELGYPIIVRAAYALGGLGSGF 556 Query: 399 RNSRFN 404 N++ Sbjct: 557 CNNQEQ 562 >gi|294776074|ref|ZP_06741570.1| TonB-dependent receptor plug domain protein [Bacteroides vulgatus PC510] gi|294450212|gb|EFG18716.1| TonB-dependent receptor plug domain protein [Bacteroides vulgatus PC510] Length = 1051 Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 67/226 (29%), Gaps = 38/226 (16%) Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 V++P ADV + G +++ G+ ++ ++++ L Sbjct: 24 AVANPGVADVKITQQN---------GACTGVVVDATGETVIGASVVVKGTTNGTITGLDG 74 Query: 130 FI------ADSNIRVEMVSDTVV---LHGM---VRTIQDSQRAVELSETFLSQSGRNQYA 177 I++ V V G V D+Q E+ T L + Sbjct: 75 DFSLSNVKKGDIIQISFVGYQTVEIPWDGQPMNVTLQDDTQTLGEVVVTALGIKREKKAL 134 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGG 236 + ++V + L+ E+ I SS+GP S G Sbjct: 135 GYAMQEV--------KGDALLEAR--EMNLANALTGKVSGVQIIRSSNGPGGSSKIQLRG 184 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G + + V+D + A + PTL +G Sbjct: 185 ANSVTGLNQPLI-VVDGVPMDNFTGASNND-----IDNPTLDMGNG 224 >gi|325192220|emb|CCA26674.1| unnamed protein product [Albugo laibachii Nc14] Length = 1517 Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 24/148 (16%) Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 GG + + G+F G + AL L P + + Q++ + Sbjct: 431 GSGGLSIGQAGEFDYSG-------SQAIKALREEGVHVILVNPNIATV--QTSKGLADKV 481 Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE---------VSEPVIGV 343 + +S+ G++ V G+ L + E + V+G Sbjct: 482 YFVPVRASTVLEVIKKEKPDGIL------VSMGGQTALNVGIELYQNGDLDRHNVIVMGT 535 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLA 371 + + R+ + G TI L+ Sbjct: 536 QIPAIINTEDREKFSEKLAEIGETIALS 563 >gi|254427758|ref|ZP_05041465.1| hypothetical protein ADG881_988 [Alcanivorax sp. DG881] gi|196193927|gb|EDX88886.1| hypothetical protein ADG881_988 [Alcanivorax sp. DG881] Length = 254 Score = 38.9 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 11/108 (10%) Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 + +SG A+ + G +S T+ D G+ TP + G + L+I Sbjct: 136 QIRTLSGYPANVSQGTLV---ALSGGYYGTTFAQLDQGI--QVTPQLTPDGSVVLQISQR 190 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383 +P A R + + TT+ + G + + + Sbjct: 191 FDQPASHNTA------RTQHSATTLRVTPGRWQPMGSITVTQSGSRQS 232 >gi|189424519|ref|YP_001951696.1| hypothetical protein Glov_1457 [Geobacter lovleyi SZ] gi|189420778|gb|ACD95176.1| hypothetical protein Glov_1457 [Geobacter lovleyi SZ] Length = 940 Score = 38.9 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 23/173 (13%) Query: 188 LNIAGEDQVTLKVTIAE-VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------VS 240 L + Q +K IAE V R +T S +GP S + GG + Sbjct: 271 LMVIKPQQTAVKGEIAEFVVRGDFLNGFTSTGLTFSVTGPGGSASPFPGGTVQLTPASLK 330 Query: 241 EGGDFSVKGVLDRFSFETVLHA-LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299 G FS++ + A + T T++ P I+G AS + T Sbjct: 331 NSGGFSIRISTSGLTIGQTYSAEVRTTTTSGTVSAPFSLTITGV-ASIK------FYTTD 383 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352 TGA + T PTV G + + I+ + S I ++ S Sbjct: 384 PGTGAKTYHTT--------LPTVTKQGTVSVGIEAQDSTGQILTTPINISSSN 428 >gi|160892053|ref|ZP_02073056.1| hypothetical protein BACUNI_04513 [Bacteroides uniformis ATCC 8492] gi|156858531|gb|EDO51962.1| hypothetical protein BACUNI_04513 [Bacteroides uniformis ATCC 8492] Length = 681 Score = 38.9 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 D T ADV + + LF K GQ N++ G+ + ++ + + ++ Sbjct: 384 GDQTIADVRTNRDSRLSLFLKEPGQTNIVWDDQPGQSLNLIEPVPNIIVGDMQRA 438 >gi|150004697|ref|YP_001299441.1| hypothetical protein BVU_2158 [Bacteroides vulgatus ATCC 8482] gi|149933121|gb|ABR39819.1| putative outer membrane protein, probably involved in nutrient binding [Bacteroides vulgatus ATCC 8482] Length = 681 Score = 38.9 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 D T ADV + + LF K GQ N++ G+ + ++ + + ++ Sbjct: 384 GDQTIADVRTNRDSRLSLFLKEPGQTNIVWDDQPGQSLNLIEPVPNIIVGDMQRA 438 >gi|255008103|ref|ZP_05280229.1| hypothetical protein Bfra3_03120 [Bacteroides fragilis 3_1_12] Length = 360 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Query: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRT----MYLFGKNVGQANVILIG 103 KI +G ++ + L + + ++D AD V T + + GK G+ ++I+ Sbjct: 41 KIILGGSESVKLTAHEN-TTLDITDGEVADAVYTWGGNTEASDIKITGKRDGETDIIVTD 99 Query: 104 HDGKQMLNLDILIER 118 H+ + + + + + Sbjct: 100 HETGETATIKVEVTK 114 >gi|218262835|ref|ZP_03477186.1| hypothetical protein PRABACTJOHN_02866 [Parabacteroides johnsonii DSM 18315] gi|218223097|gb|EEC95747.1| hypothetical protein PRABACTJOHN_02866 [Parabacteroides johnsonii DSM 18315] Length = 546 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 18/157 (11%) Query: 2 RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61 R+L + + ++ ++ + S ++ + I +S V + ++ + + + L Sbjct: 3 RFLLKGWASVCALAVMFGTVSCSE----DDKPVGTIAVSAVAVSPATA-TVKVGESVTLS 57 Query: 62 ---VPVDVQDVLV----SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114 P D D + SD A V + G G A + DG++ + Sbjct: 58 ATITPEDATDKTITWSSSDEKVATVDAGK-----VTGVAEGTATITATTKDGEKTATCAV 112 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 + + + S++ + L G V Sbjct: 113 TVSNSAPSSKEVILEGEITSDLTLNAADKNY-LKGFV 148 >gi|308209082|gb|ADO20886.1| S-layer protein EA1 [Bacillus weihenstephanensis] Length = 824 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 21/161 (13%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVL-----VSDPTKADVVVHSPRTMYLFGKNV 94 +D +G G ++ L+ V D D+ V + A + +T+ + GK Sbjct: 621 ADTTLGAGNTVNYQLSNYTTEGVYADAADLAGYELRVGNEGIASAKIEG-KTLKVTGKKA 679 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G +VIL DG + I + ++ + + ++ VE + V Sbjct: 680 GVTDVILT-KDGATAGHATITVTQENIQITS-----VKFKDVEVEQFENRKV-------- 725 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 D R +++ ++ N S++ + +++ GE+Q Sbjct: 726 -DIDRVLDVVKSDKDDVLNGIKLNISTEHKVRIVDAEGENQ 765 >gi|193697813|ref|XP_001943635.1| PREDICTED: CAD protein-like [Acyrthosiphon pisum] Length = 2235 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 63/189 (33%), Gaps = 19/189 (10%) Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289 GG + + G+F G + AL + L P + + Q++ + Sbjct: 398 LILGSGGLSIGQAGEFDYSG-------SQAIKALREENIVTILINPNIATV--QTSLGLA 448 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR---IQTEVSEPVIGVNAG 346 + + G++L F I L+ I + + V+G Sbjct: 449 NKVYFLPLELDFVSQVIQSERPDGILLTFGGQTALNCGIELKKSGILEKYNIKVLGTPIE 508 Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL-GALFR----NS 401 + + RK + + G + + ++ ++ E + L P+L + F S Sbjct: 509 TIIATEDRKQFSDRVVEIGERVAPSSVV-TSYEEALEAVKTLGY-PLLVRSAFSLGGLGS 566 Query: 402 RFNREETEI 410 F E+E+ Sbjct: 567 GFANNESEL 575 >gi|257457694|ref|ZP_05622861.1| ABC transporter, permease protein [Treponema vincentii ATCC 35580] gi|257445080|gb|EEV20156.1| ABC transporter, permease protein [Treponema vincentii ATCC 35580] Length = 310 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 13/88 (14%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L+ +S I + A + Y R + + +A +++ D IP Sbjct: 89 SITLKADQVISGTAINMLAAALTIYMARTITGSGNVR------VASIIRQD-------IP 135 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414 LSKIP+LG LF + + + I Sbjct: 136 GLSKIPVLGPLFFSQVYWSTWLVLVILI 163 >gi|160915695|ref|ZP_02077903.1| hypothetical protein EUBDOL_01704 [Eubacterium dolichum DSM 3991] gi|158432171|gb|EDP10460.1| hypothetical protein EUBDOL_01704 [Eubacterium dolichum DSM 3991] Length = 2026 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 48/140 (34%), Gaps = 10/140 (7%) Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRT---MY-LFGKNVGQANVILIGHDGKQ-MLNLDIL 115 + P V S+P A +V + + +Y + G + G A + L K + + Sbjct: 1605 ECPNKFFTVTSSNPEVASIVTLADKNGNPIYKVRGVSEGDATITLTSAADKTKTASYVVR 1664 Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175 + + + L + I D + +D + + A++++ + Sbjct: 1665 VVKGAD--KKELAQLIEDYK---NLAADNYTAESYAKFEKALAEALKVNSDVDATRAEVD 1719 Query: 176 YANSSSKKVMNLLNIAGEDQ 195 A + + + L D+ Sbjct: 1720 NATVALRNAVMSLETKPVDE 1739 >gi|229918368|ref|YP_002887014.1| hypothetical protein EAT1b_2653 [Exiguobacterium sp. AT1b] gi|229469797|gb|ACQ71569.1| hypothetical protein EAT1b_2653 [Exiguobacterium sp. AT1b] Length = 1253 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 40/312 (12%), Positives = 96/312 (30%), Gaps = 46/312 (14%) Query: 61 QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK------NVGQANVILIGHDGKQMLNLDI 114 ++P ++ V + D + V +P + L K G N+ L G + + ++ Sbjct: 739 KLPSQLEVVAIRDANGKEYPVTNPNEIKLQLKPDLYYERNGNTNIFLPNDSGNRTVKFEV 798 Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 ++ + S I+++ + L ++ + ++ + + Sbjct: 799 VVRA----------IEPSASLIQLKKADNQ--LTSLIEYSKKRDHILDKHNDWDKELEVQ 846 Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----- 229 L+NI + I +V I Q +IT + + Sbjct: 847 SSFPDL------LINIGAPY--AYEAKIPDVTLQIGAQQIVSPTITDAKGNTFTNPKWKS 898 Query: 230 -----FAADFGGKFVSEGGDFSVKGV-LDRFSFETVLH------ALERATAIRTLAEPTL 277 A+ K V++G + V G+ + + + + ++ P Sbjct: 899 LKWEIVDANGVAKLVTQGNNAIVTGLKTGTAKLRLTIDPGDKKPLVIAESKVNVISPPEQ 958 Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT-HDYGVVLHFTPTVLSPGRIGLRIQTEV 336 AI K + + SV + G + F + + ++ Sbjct: 959 LAIPSTELYVGQTTTVTPKVMPETAQYKSVRYVVESGDSVKFE--QVGNNLNIIGLKPGT 1016 Query: 337 SEPVIGVNAGDM 348 ++ V+ GD+ Sbjct: 1017 TQFKATVDVGDL 1028 >gi|49083486|gb|AAT51046.1| PA2633 [synthetic construct] Length = 274 Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 46/153 (30%), Gaps = 8/153 (5%) Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + + G+ ++ + + + + R+T R+ + A G A G Sbjct: 102 GYSVDGSASAGNIEIQSGRGEVNGKDRVRIIRRSTDSRSGGSQQVQATEGYPALIQVGQS 161 Query: 293 HLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 + ++ + + + T T+ + +S ++ Sbjct: 162 VPITSTATGPYGQIYSQTEYRNVNRGFYVTATLTGN-----LVHVTISSSNDRLSQSHPG 216 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + DT V G I L G+ + + + Sbjct: 217 VIDTQSTDTRVSGKLGEWITLGGVSEQNQADQR 249 >gi|15597829|ref|NP_251323.1| hypothetical protein PA2633 [Pseudomonas aeruginosa PAO1] gi|254241065|ref|ZP_04934387.1| hypothetical protein PA2G_01747 [Pseudomonas aeruginosa 2192] gi|313107670|ref|ZP_07793853.1| hypothetical protein PA39016_001050022 [Pseudomonas aeruginosa 39016] gi|9948700|gb|AAG06021.1|AE004691_12 hypothetical protein PA2633 [Pseudomonas aeruginosa PAO1] gi|126194443|gb|EAZ58506.1| hypothetical protein PA2G_01747 [Pseudomonas aeruginosa 2192] gi|310880355|gb|EFQ38949.1| hypothetical protein PA39016_001050022 [Pseudomonas aeruginosa 39016] Length = 273 Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 46/153 (30%), Gaps = 8/153 (5%) Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + + G+ ++ + + + + R+T R+ + A G A G Sbjct: 102 GYSVDGSASAGNIEIQSGRGEVNGKDRVRIIRRSTDSRSGGSQQVQATEGYPALIQVGQS 161 Query: 293 HLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 + ++ + + + T T+ + +S ++ Sbjct: 162 VPITSTATGPYGQIYSQTEYRNVNRGFYVTATLTGN-----LVHVTISSSNDRLSQSHPG 216 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382 + DT V G I L G+ + + + Sbjct: 217 VIDTQSTDTRVSGKLGEWITLGGVSEQNQADQR 249 >gi|251799238|ref|YP_003013969.1| S-layer domain protein [Paenibacillus sp. JDR-2] gi|247546864|gb|ACT03883.1| S-layer domain protein [Paenibacillus sp. JDR-2] Length = 2141 Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 49/346 (14%), Positives = 106/346 (30%), Gaps = 34/346 (9%) Query: 30 KEANAAVINISDVEIGKGKKISIGLNKVIILQV---PVDV--QDV--LVSDPTKADVVVH 82 A I ++ + ++ + L+ + V P + + V ++ A V Sbjct: 1614 NSAAETPIRVTGLTANTPSQLQLSLDSSAQINVAVVPAEAGNKRVVWSSANSKVAYVSAA 1673 Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142 + +G + DG + + + + + + Sbjct: 1674 G----LVKAVGIGSTVITAKSTDGNLEKQFVVAVASNDSSSNPSSGGTTTQPGPDLTDKG 1729 Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK-------VMNLLNIAGEDQ 195 + L TI S V + + A S+ ++ L N G + Sbjct: 1730 --IKLGQDAVTIVRSTDGVTEAAIDAKKLQDAFQALSAKPSSVKFNSVIIELKNNGGSVK 1787 Query: 196 VTLKVT-IAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKFVSEGGDFSVKGVLDR 253 V + + +A+V +D+ + GS P K+ AD K + + ++ V+D+ Sbjct: 1788 VNIPSSGLADVGKDLSDASILILTDFGSYKVPVKALGLADIAQKLGTSLENMTLSVVIDK 1847 Query: 254 FS-FETVLHALERATAIRTLAEP----TLTAISGQSASFTSG-------GQHLYKTVSSS 301 + L A + + TL P + A + + +G + + Sbjct: 1848 VAGSTADLLAEQASKEGLTLLAPALDYKIYAQANGKSVEITGFGSTYIERTVIVPGAVNQ 1907 Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 AT++ + F P+VL + + I D Sbjct: 1908 ANATALLFNPDTRTFTFVPSVLEDNGGSTEFVIKRNGNSIYAVVSD 1953 >gi|218526198|gb|ACK86506.1| carbamoyl-phosphate synthase [Libelloides rhomboideus rhomboideus] Length = 686 Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 12/161 (7%) Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 K + V+ ++ ++ ++ + S+ P K GG + + G+F G Sbjct: 42 KAHVVSVKNELTNRLSYKPEQSLSNEIPKKVLIIGSGGLSIGQAGEFDYSG-------SQ 94 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 + AL+ L P + + Q++ + + V + GV+L F Sbjct: 95 AIKALKEENIQTVLINPNIATV--QTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLLTF 152 Query: 319 TPTVLSPGRIGLR---IQTEVSEPVIGVNAGDMPSYRVRKA 356 + L + + ++G + RK Sbjct: 153 GGQTALNCGVELEKANVFAKYGWKILGTPIQSIIETEDRKM 193 >gi|107102154|ref|ZP_01366072.1| hypothetical protein PaerPA_01003204 [Pseudomonas aeruginosa PACS2] gi|254235618|ref|ZP_04928941.1| hypothetical protein PACG_01546 [Pseudomonas aeruginosa C3719] gi|296388907|ref|ZP_06878382.1| hypothetical protein PaerPAb_12190 [Pseudomonas aeruginosa PAb1] gi|126167549|gb|EAZ53060.1| hypothetical protein PACG_01546 [Pseudomonas aeruginosa C3719] Length = 273 Score = 38.5 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 45/152 (29%), Gaps = 8/152 (5%) Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + + G+ ++ + + + + R+T R+ + A G A G Sbjct: 102 GYSVDGSASAGNIEIQSGRGEVNGKDRVRIIRRSTDSRSGGSQQVQATEGYPALIQVGQS 161 Query: 293 HLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 + ++ + + + T T+ + +S ++ Sbjct: 162 VPITSTATGPYGQIYSQTEYRNVNRGFYVTATLTGN-----LVHVTISSSNDRLSQSHPG 216 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + DT V G I L G+ + + Sbjct: 217 VIDTQSTDTRVSGKLGEWITLGGVSEQNQADQ 248 >gi|218891206|ref|YP_002440072.1| putative secretion system protein [Pseudomonas aeruginosa LESB58] gi|218771431|emb|CAW27198.1| putative secretion system protein [Pseudomonas aeruginosa LESB58] Length = 273 Score = 38.5 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 45/152 (29%), Gaps = 8/152 (5%) Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + + G+ ++ + + + + R+T R+ + A G A G Sbjct: 102 GYSVDGSASAGNIEIQSGRGEVNGKDRVRIIRRSTDSRSGGSQQVQATEGYPALIQVGQS 161 Query: 293 HLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 + ++ + + + T T+ + +S ++ Sbjct: 162 VPITSTATGPYGQIYSQTEYRNVNRGFYVTATLTGN-----LVHVTISSSNDRLSQSHPG 216 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + DT V G I L G+ + + Sbjct: 217 VIDTQSTDTRVSGKLGEWITLGGVSEQNQADQ 248 >gi|328875482|gb|EGG23846.1| dihydroorotase [Dictyostelium fasciculatum] Length = 2221 Score = 38.5 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 12/135 (8%) Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284 G +K GG + + G+F G + AL+ L P + + Q+ Sbjct: 398 GITKVLLLGSGGLSIGQAGEFDYSG-------SQAIKALKEEGIKTVLINPNIATV--QT 448 Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR---IQTEVSEPVI 341 + + + ++S + G+++ F I L I + + V+ Sbjct: 449 SPGLADKVYFLPVNAASVTKVIINEKPDGILVTFGGQTALNCGIELYKSGILEKYNVKVM 508 Query: 342 GVNAGDMPSYRVRKA 356 G + S R Sbjct: 509 GTPIDTIISTEDRGI 523 >gi|116050620|ref|YP_790561.1| hypothetical protein PA14_30070 [Pseudomonas aeruginosa UCBPP-PA14] gi|115585841|gb|ABJ11856.1| putative secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 273 Score = 38.5 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 45/152 (29%), Gaps = 8/152 (5%) Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292 + + G+ ++ + + + + R+T R+ + A G A G Sbjct: 102 GYSVDGSASAGNIEIQSGRGEVNGKDRVRIIRRSTDSRSGGSQQVQATEGYPALIQVGQS 161 Query: 293 HLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349 + ++ + + + T T+ + +S ++ Sbjct: 162 VPITSTATGPYGQIYSQTEYRNVNRGFYVTATLTGN-----LVHVTISSSNDRLSQSHPG 216 Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381 + DT V G I L G+ + + Sbjct: 217 VIDTQSTDTRVSGKLGEWITLGGVSEQNQADQ 248 >gi|260829361|ref|XP_002609630.1| hypothetical protein BRAFLDRAFT_83617 [Branchiostoma floridae] gi|229294992|gb|EEN65640.1| hypothetical protein BRAFLDRAFT_83617 [Branchiostoma floridae] Length = 875 Score = 38.5 bits (88), Expect = 2.8, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 12/134 (8%) Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 PSK GG + + G+F G + AL+ L P + + Q++ Sbjct: 24 PSKVLILGSGGLSIGQAGEFDYSG-------SQAIKALKEEGIQTVLINPNIATV--QTS 74 Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR---IQTEVSEPVIG 342 + + + G++L F + L + + + V+G Sbjct: 75 KGLADKVYFLPIKPDYVTQVIKSERPDGILLTFGGQTALNCGVELTKQGVLEKYNVKVLG 134 Query: 343 VNAGDMPSYRVRKA 356 + R+ Sbjct: 135 TPVSSIVMTEDREI 148 >gi|326429502|gb|EGD75072.1| notch [Salpingoeca sp. ATCC 50818] Length = 2986 Score = 38.1 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 3/81 (3%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 V++P V L G GQA ++L G + + I + Sbjct: 500 VTNPNVVRV---DRERFTLTGTAPGQATLVLQNTFGDLLATVSIEVSTAQVSALSVDAAA 556 Query: 131 IADSNIRVEMVSDTVVLHGMV 151 +N+ + + +D + +G Sbjct: 557 YQPANVSLRLSNDELAQNGDA 577 >gi|160878916|ref|YP_001557884.1| inner-membrane translocator [Clostridium phytofermentans ISDg] gi|160427582|gb|ABX41145.1| inner-membrane translocator [Clostridium phytofermentans ISDg] Length = 317 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 12/93 (12%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I ++ +S + + A + R+ ++ T + + +P Sbjct: 88 SIHMKADQTISGTALNMFAPAFAIFTARQIQGVQQINFDNTFRI------------QKVP 135 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +L IPILG L + + + +V Sbjct: 136 VLGDIPILGELLFQNSYITTYLGFLVLIIASIV 168 >gi|312019782|emb|CBH95064.1| major tail protein V [Enterobacteria phage phi80] Length = 247 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 4/80 (5%) Query: 39 ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98 + V +G +++ +N V +D KA V + T+ + G G A+ Sbjct: 171 TASVAVGATTTLNVTVNPA---SASDKSFRVSSADRAKATVTA-NGNTLTVTGVAAGTAD 226 Query: 99 VILIGHDGKQMLNLDILIER 118 +I++ DG + + + Sbjct: 227 IIVMTSDGNFVAVCKVTVTA 246 >gi|156030991|ref|XP_001584821.1| hypothetical protein SS1G_14276 [Sclerotinia sclerotiorum 1980] gi|154700667|gb|EDO00406.1| hypothetical protein SS1G_14276 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1551 Score = 38.1 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 21/91 (23%) Query: 329 GLRIQTEVSEPVIGVNAGDMPS-------YRVRKADTTVELPSG-GTIVLA--G------ 372 L + P G+NA +P RVR AD+ V G T + G Sbjct: 36 SLHVDLIKHNPDSGLNAPSVPLNSSTSDLSRVRSADSGVSADDGFRTQAIGQAGVDKPPT 95 Query: 373 LLKDDIQQLKEGI-----PLLSKIPILGALF 398 L + + P L + P L LF Sbjct: 96 LYRSSTTNSAVKVRRHQIPGLRQTPYLKILF 126 >gi|78188507|ref|YP_378845.1| hypothetical protein Cag_0529 [Chlorobium chlorochromatii CaD3] gi|78170706|gb|ABB27802.1| hypothetical protein Cag_0529 [Chlorobium chlorochromatii CaD3] Length = 4697 Score = 38.1 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 57/384 (14%), Positives = 131/384 (34%), Gaps = 35/384 (9%) Query: 12 MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ--VPVDVQDV 69 +I + P+++ P A AV +++ + + ++ K ++L + + Sbjct: 846 FTITPDVTAPTLSSSIPADNA-VAVAVGANIVLNFSESVTAVAGKNVVLHNVTDSTITTI 904 Query: 70 LVSDPTK---ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 +D ADVV+ +P +L GK + + G + D + T Sbjct: 905 AANDAQVSIVADVVIINPTADFLNGK-----DYYVTVDAGAFI---DGAGNGYAGITDAT 956 Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 L F ++ +S ++ V + + SE+ + +G+N ++ + Sbjct: 957 LLNFTITPDVTAPTLSSSIPADNAVAVAVGANIVLNFSESVTAVAGKNVVLHNVTDSTTT 1016 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246 + A + QV++ + + G + +T + + G + +F+ Sbjct: 1017 TI-AANDAQVSIVAGVVIINPTADLLNGKDYYVTVDAGAFIDGAGNGYAGIADATLLNFT 1075 Query: 247 VKGVLDRFSFETVL---HALERATAIRTLAE--PTLTAISGQSASFTSGGQHLYKTVSSS 301 + + + + + +AL A + ++TA++G+S + T++++ Sbjct: 1076 ITSDVTAPTLSSSIPADNALAVAVDANIVLNFSESVTAVAGKSVVLHNVTDSSTTTIAAN 1135 Query: 302 TGATSVTT--------------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347 S+ DY V + + G I + Sbjct: 1136 DAQVSIVAGVVIINPTADFLNGKDYYVTVDAGAFIDGAGNSYAGIADAATLNFTTTPDVT 1195 Query: 348 MPSYRVRK-ADTTVELPSGGTIVL 370 P+ AD V + G IVL Sbjct: 1196 APTLSSSIPADNAVAVAVGANIVL 1219 >gi|332881096|ref|ZP_08448764.1| bacterial group 2 Ig-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681008|gb|EGJ53937.1| bacterial group 2 Ig-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 447 Score = 38.1 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 63/194 (32%), Gaps = 10/194 (5%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQVPV 64 + F + + A +A+ N ++ + K + + + + Sbjct: 2 KRFNPFCVMVALFALIIAACSKDDNKADNKPENPKELILEKTSLTLKVAETATLTVTSGN 61 Query: 65 DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124 V V+D A V + T+ + G+ V + GK +L + + A ++ Sbjct: 62 GSYTVKVADQAVASATV-TQNTLKITAIAQGETVVTVADAKGKT-ASLSVTVTGIFAVVD 119 Query: 125 MTLRRFIADSNIRVEMVSDTV------VLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178 ++ + V++ + V G+V + + + + + Sbjct: 120 KSVTVE-NGAKTDVKLQNGHANYNCVCVPEGVVLVSAKTDNVLSVEGLKVGSATVTVTDV 178 Query: 179 SSSKKVMNLLNIAG 192 S K+ + + + G Sbjct: 179 QSGKQDIFEVTVTG 192 >gi|291456388|ref|ZP_06595778.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Bifidobacterium breve DSM 20213] gi|291381665|gb|EFE89183.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Bifidobacterium breve DSM 20213] Length = 396 Score = 38.1 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 23/173 (13%) Query: 78 DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI--ERDIAHLEMTLRRF----- 130 DV+ P + G G A++ L+ Q ++ + I L+ L++ Sbjct: 24 DVIARHPERFTVTGLAAGGAHIELLARQAAQFRVPEVAVFDSTKIPALKEALQQAGARDT 83 Query: 131 ----IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186 D+ I + VVL+G+ + + L + + +Q A ++ + V+ Sbjct: 84 RVTGGPDAVIALAGSGANVVLNGITGS-------IGLEPSIAALKANSQLALANKESVVA 136 Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGPSKSFAADFGGKF 238 ++ QV ++ + S+ +G+ + SK GG F Sbjct: 137 GGHLLFSAQVRDD----QINPVDSEHSAIWQSLRSGTHAEVSKLVVTASGGPF 185 >gi|149178593|ref|ZP_01857180.1| hypothetical protein PM8797T_13750 [Planctomyces maris DSM 8797] gi|148842611|gb|EDL56987.1| hypothetical protein PM8797T_13750 [Planctomyces maris DSM 8797] Length = 767 Score = 38.1 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 60/202 (29%), Gaps = 25/202 (12%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 Q+T + E D+ Q + + + + K + V + F Sbjct: 526 QITFASILMETTSDVAAQTDIEWTGLAGFQNTTAAPHQPHLDKTNPRPVVQASAAVEEYF 585 Query: 255 SFET----------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 ++ A +R P +T +GQ S + Q + + Sbjct: 586 PISVAVINEQQEFKLIQAAQRDERSHCAFNPKVTLFNGQKGSIVNQVQRPFVIGVHKAKS 645 Query: 305 TSVTTH----DYGVVLHFTPTVLSPGR-IGLRIQTEVSEPV------IGVNA----GDMP 349 + G+ L P + + + L + + SE V+ +P Sbjct: 646 GELKPELKVIAEGMTLELRPILTADHTAVRLEVLVKQSEISRVKILETQVSGKKINFQVP 705 Query: 350 SYRVRKADTTVELPSGGTIVLA 371 S R+ +L +++++ Sbjct: 706 SVEQRRISVAADLSGKNSLLIS 727 >gi|289600672|gb|ADD13203.1| carbomoylphosphate synthase [Axinidris mlalu] Length = 321 Score = 38.1 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 19/171 (11%) Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248 I G Q+++K + + + ++ +I + P K GG + + G+F Sbjct: 70 EIGGHSQISIKDR-------LTRNLTYESAIPITIGRPKKVLILGSGGLSIGQAGEFDYS 122 Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308 G + AL+ + L P + + Q++ + + + + Sbjct: 123 G-------SQAIKALKEESIQTLLINPNIATV--QTSKGMADKVYFLPIIPEYVEQVIQS 173 Query: 309 THDYGVVLHFTPTVLSPGRIGLR---IQTEVSEPVIGVNAGDMPSYRVRKA 356 GV+L F + L + T+ + ++G + RK Sbjct: 174 ERPDGVLLTFGGQTALNCGVELEKNGVFTKYNVKILGTPIESIIQTEDRKI 224 >gi|196228089|ref|ZP_03126956.1| hypothetical protein CfE428DRAFT_0120 [Chthoniobacter flavus Ellin428] gi|196227492|gb|EDY21995.1| hypothetical protein CfE428DRAFT_0120 [Chthoniobacter flavus Ellin428] Length = 478 Score = 38.1 bits (87), Expect = 3.3, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 +E + + S + T T + G+ + F P + G+ + I Sbjct: 341 SETGVITDNKGETSNLTLSHTPSNARRDPGFGTKFDTRNAGITVEFEPVLREDGK-RMDI 399 Query: 333 QTEVSE---------PVIGVNAGDMPSYRVRKADTTVELPSGGT 367 + P IG N P ++ K T+ + SG T Sbjct: 400 NEVIQNVHFRGMLKVPGIGANYQPQPLFQTSKIMTSQTVISGRT 443 >gi|89893914|ref|YP_517401.1| hypothetical protein DSY1168 [Desulfitobacterium hafniense Y51] gi|219668288|ref|YP_002458723.1| inner-membrane translocator [Desulfitobacterium hafniense DCB-2] gi|89333362|dbj|BAE82957.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538548|gb|ACL20287.1| inner-membrane translocator [Desulfitobacterium hafniense DCB-2] Length = 321 Score = 38.1 bits (87), Expect = 3.3, Method: Composition-based stats. Identities = 6/25 (24%), Positives = 13/25 (52%) Query: 374 LKDDIQQLKEGIPLLSKIPILGALF 398 + ++ +P L +P++G LF Sbjct: 124 ITTNVNFYLRKVPFLGDLPVIGKLF 148 >gi|332670422|ref|YP_004453430.1| cellulose-binding family II protein [Cellulomonas fimi ATCC 484] gi|332339460|gb|AEE46043.1| cellulose-binding family II [Cellulomonas fimi ATCC 484] Length = 918 Score = 38.1 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 15/175 (8%) Query: 88 YLFGKNV---GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-VEMVSD 143 +L+G G +N+ G + I + L ++ V + D Sbjct: 438 FLYGTGATVYGGSNLTAWDSGG----TVKIGVRAQGIEETAVLDLAAPPGPVQLVSGLGD 493 Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203 + G V T A ++ + +A + ++ + T++ I Sbjct: 494 ---VGGFVHTDITKVPAQMYTQPYHGSVTGVDFAEAKPAT---MVRVGQAVDGTVESHIG 547 Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 V G + G + + +AD G S G + S+ Sbjct: 548 -VTTSSGSSWWAGQQPAGVTGGGTVALSADGGTIVWSPAGTGVHRSTTLGSSWTA 601 >gi|260220456|emb|CBA28011.1| hypothetical protein Csp_A05150 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 211 Score = 38.1 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 21/129 (16%) Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT----------------- 305 L +A + +G+ S + V S+ + Sbjct: 53 LGTKPDAPLMAPQKIQVRNGEKGSLRMNQSVPMQWVQSANSQSNSISAGGTSVSSSGGGV 112 Query: 306 --SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVEL 362 SV D G + TP G ++ +V + + V N DMP + TTV Sbjct: 113 TQSVQWFDVGQSITVTPR-WPGGNKDATVEIDVQQADMAVRNNADMPRQTRNQLSTTVST 171 Query: 363 PSGGTIVLA 371 P G + +A Sbjct: 172 PLGQWVTIA 180 >gi|322835199|ref|YP_004215225.1| Ig domain protein group 2 domain protein [Rahnella sp. Y9602] gi|321170400|gb|ADW76098.1| Ig domain protein group 2 domain protein [Rahnella sp. Y9602] Length = 245 Score = 38.1 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 6/92 (6%) Query: 32 ANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-----VQDVLVSDPTKADVVVHSPRT 86 AAV + +G N VI + V D +V +DPT A + S T Sbjct: 154 QAAAVPVTGVTVTQSTTSVVVGQNAVITVAVLPDGATNGAFNVAAADPTVA-TLTVSGNT 212 Query: 87 MYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 + G G +I++ +DG+++ + + Sbjct: 213 VTAKGLKAGTTQLIVMTNDGQKVAICTLTVTA 244 >gi|330810460|ref|YP_004354922.1| hypothetical protein PSEBR_a3579 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378568|gb|AEA69918.1| Conserved hypothetical protein; putative exported protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 253 Score = 38.1 bits (87), Expect = 3.5, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 8/109 (7%) Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + A GQ A G + + + + + + T +V Sbjct: 124 QQVQASEGQPALIQVGQSVPFTSSQTDNYGRLQSQTEYRNVTQGFYVTASVTGE-----T 178 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + +S ++ V+ DTTV G I LAG+ + Sbjct: 179 VHLSISTNRDRMSQERPDVVNVQSTDTTVSGRLGEWITLAGVNRQTQAD 227 >gi|46204952|ref|ZP_00049249.2| COG5492: Bacterial surface proteins containing Ig-like domains [Magnetospirillum magnetotacticum MS-1] Length = 443 Score = 38.1 bits (87), Expect = 3.5, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 62/205 (30%), Gaps = 17/205 (8%) Query: 46 KGKKISIGLNKVIILQ---VPVDVQDVLVS-DPTKADVVVHSPRTMYLFGKNVGQANVIL 101 + + +G+ L P + ++ ADV S + + G G A V Sbjct: 252 TPESLEVGVGGTRQLTATVTPANATARAITWASDDADVATVSADGV-VTGVGEGHALVTA 310 Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161 DG + + + + D+ L + A ++T + A Sbjct: 311 TTADGSRTAYVAVEVTADVPGLVVR----YAFDETSGTAAANTAPGSSFGPATLTNGAAF 366 Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 + ++ G + Y + + L ++ V L V +A F + + Sbjct: 367 SGTGEGVTLDGTDDYVDLPDHLLAGLTDVT----VALDVKVA----TDQATPYFVYGLGN 418 Query: 222 SSSGPSKSFAADFGGKFVSEGGDFS 246 +S + G + + + Sbjct: 419 TSGTAGDGYLFTTGNAYRTSIAIGN 443 >gi|229028679|ref|ZP_04184792.1| hypothetical protein bcere0028_7920 [Bacillus cereus AH1271] gi|228732642|gb|EEL83511.1| hypothetical protein bcere0028_7920 [Bacillus cereus AH1271] Length = 874 Score = 38.1 bits (87), Expect = 3.5, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 21/161 (13%) Query: 40 SDVEIGKGKKISIGLNKVIILQVPVDVQDVL-----VSDPTKADVVVHSPRTMYLFGKNV 94 +D +G G ++ L+ V D D+ V + A + +T+ + GK Sbjct: 633 ADTTLGAGNTVAYQLSNYTTEGVYADAADLAGYEFRVGNDAIASAKIEG-KTLKVTGKTA 691 Query: 95 GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154 G +VIL DG + I + ++ + + ++ VE + V Sbjct: 692 GVTDVILT-KDGATAGHATITVTQENIQITS-----VKFKDVEVEQFENRKV-------- 737 Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195 D R +++ ++ N S++ + +++ G DQ Sbjct: 738 -DIDRVLDVVKSDKDDVLNGIKLNISTEHKVRIVDAEGTDQ 777 >gi|293372378|ref|ZP_06618762.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f] gi|292632561|gb|EFF51155.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f] Length = 394 Score = 38.1 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 94/267 (35%), Gaps = 30/267 (11%) Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD---IAHLE 124 V S+ A V S + + G G A + +I N+ +++ ++ Sbjct: 61 KVSSSNAAVATA-VISGNEVIVTGLKYGTATLTVIDWTKNS-ANVKVVVAQEQELAVKTS 118 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS----QRAVELSETFLSQSGRNQYANSS 180 T F + + + + ++ + +E++ + + + +S Sbjct: 119 STTMFFEEHKTLEIYTGNGGYSITSSNESVATAKISEDGKIEITSSIVPGTAILTVKDSH 178 Query: 181 SK------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 +K KV+ L + + +T +T V IL G + ++++ + Sbjct: 179 NKTAEIAVKVIKRLVVDNSEDITYLITSEPVTIKILD-------GNGEYTCTPPNYSSSY 231 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATA-----IRTLAEPTLTAISGQSASFTS 289 ++E G + L R F + ++ I+T+ EP S + Sbjct: 232 LKCTMAENGTEVIIEGLKRNYFNKAITIKDKEGQSIDIHIKTIDEP---YWENPSYRYLI 288 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVL 316 G + Y+ +S++ ++ + + + L Sbjct: 289 AGSYAYQYLSTAKVGEAIYSEELNISL 315 >gi|313115634|ref|ZP_07801091.1| bacterial Ig-like domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622050|gb|EFQ05548.1| bacterial Ig-like domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 506 Score = 37.7 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 48/313 (15%), Positives = 103/313 (32%), Gaps = 18/313 (5%) Query: 69 VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128 V +SD T ++ S + + VG + G Q+ I++ D + + + Sbjct: 84 VFISDDT--SILTVSNSGV-VQAVGVGTTRITA--AAGNQICAYTIVVSMDSSMIVTEMD 138 Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA-VELSETFLSQSGRNQYA--NSSSKKVM 185 ++ + I V ++V VR S A V L+ + + N + + Sbjct: 139 LSLSSNTIYV---GNSVSAQLQVRPTSASNYATVALTSSNEKVATVNNFGRVTGIAPGTA 195 Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245 + G T VT+ + S +G + S+ G + Sbjct: 196 TITATCGSVTATTNVTVMSIPNSSTGTASTGSSNSGQVVTVNPSYVVLKPGATRTLTASV 255 Query: 246 SVKGVLDRFSFETVLHALERATAIRTLA-----EPTLTAISGQ-SASFTSGGQHLYKTVS 299 +F++++ + + + ++T +G SA T + S Sbjct: 256 KPSSASQKFTYKSANSNIATVSPSGVITAVGTGATSITVSNGTASAMVTVIVNRSAASSS 315 Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359 ++ +S T D + P V + + ++ + GD+ + T Sbjct: 316 DNSSDSSSTEPDNDTPIEIDPVVQAIQDSE-DNEIVFTQAEVPTVTGDILNALRTTGKTL 374 Query: 360 VELPSGGTIVLAG 372 + G T+ +AG Sbjct: 375 CVVGDGYTMQIAG 387 >gi|238755357|ref|ZP_04616699.1| hypothetical protein yruck0001_7720 [Yersinia ruckeri ATCC 29473] gi|238706392|gb|EEP98767.1| hypothetical protein yruck0001_7720 [Yersinia ruckeri ATCC 29473] Length = 182 Score = 37.7 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 34/191 (17%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253 QV + I V S S G V E + Sbjct: 3 RQVAIHTQILRVEAP-SNNKKIDWSAVVKSPFTDTPADEFSGVAIVDE-----------K 50 Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 + + AL + + + T + A F Y+ S S G Sbjct: 51 PGAKGFISALSTQATVSVITQSTTLTTNQAVAPFQ------YQQESGSNNE--------G 96 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADT---TVELPSGG 366 V + P ++ +++Q +S + + G+ T V + SG Sbjct: 97 VNMTVLPLLMPSSS-KMQLQLSLSGYDTQIQPFSSGGNTVELTKTHLKTFTQRVNIQSGQ 155 Query: 367 TIVLAGLLKDD 377 T+VL+G+ + Sbjct: 156 TLVLSGMSSNQ 166 >gi|254520856|ref|ZP_05132912.1| ABC transporter [Clostridium sp. 7_2_43FAA] gi|226914605|gb|EEH99806.1| ABC transporter [Clostridium sp. 7_2_43FAA] Length = 315 Score = 37.7 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 14/88 (15%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L +S I + AG + + R SG V G + D IP Sbjct: 88 SINLNANQVISGTAINMIAGALTVFLARNIT-----GSGNIRVTNGFIPKD-------IP 135 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414 +LS+IPI+G LF + T + I Sbjct: 136 VLSQIPIIGPLFFTKTYAT--TWLVIVI 161 >gi|23506944|gb|AAN37924.1| adhesin [Haemophilus influenzae] Length = 1391 Score = 37.7 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 47/338 (13%), Positives = 103/338 (30%), Gaps = 38/338 (11%) Query: 69 VLVSDPTKADVVVHSP----------RTMYLFGK-------NVGQANVIL---IGHDGKQ 108 V V + + + VH+P T+ + GK +VG V+L G++ Sbjct: 415 VSVGEESTVEWQVHNPEGDRLSKIGLGTLLVNGKGKNLGSLSVGNGLVVLDQQADESGQK 474 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 ++ I A +++ + +NI + L+G T + Q E + Sbjct: 475 QAFKEVGIVSGRATVQLNSADQVDPNNIYFGFRGGRLDLNGHSLTFERIQNTDEGAMIVN 534 Query: 169 SQSGRNQYANSSSKKVMNL--LNIAGEDQVTLKVTIAEVRRDILK-QIGFQHSITGSSSG 225 + + + +N + + + E + ++ + + + Sbjct: 535 HNASQTANITITGNATINSDSKQLTNKKDIAFNGWFGEQDKAKTNGRLNVNYQPVNAENH 594 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV---LHALERATAIRTLAEPTLT--AI 280 S + G GG G ++ + L +E + + Sbjct: 595 LLLSGGTNLNGNITQNGGTLVFSGRPTPHAYNHLRRDLSNMEGIPQGEIVWDHDWINRTF 654 Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV-----LSPGRIGLRIQTE 335 ++ G + + VSS G +V+ ++ P GL Sbjct: 655 KAENFQIKGGSAVVSRNVSSIEGNWTVS-NNANATFGVVPNQQNTICTRSDWTGLTTCKT 713 Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 V V + S + + ++ L T+ + GL Sbjct: 714 VDLTDKKV----INSIPTTQINGSINLTDNATVNIHGL 747 >gi|297584835|ref|YP_003700615.1| inner-membrane translocator [Bacillus selenitireducens MLS10] gi|297143292|gb|ADI00050.1| inner-membrane translocator [Bacillus selenitireducens MLS10] Length = 321 Score = 37.7 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 13/78 (16%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG-LLKDDIQQLKEGI 385 I L+ VS + A + + VR+ G T ++ L + + + Sbjct: 92 SITLKADQIVSGVALNFLATGLTVFLVREI-----FERGQTDTISARLFRTN-------V 139 Query: 386 PLLSKIPILGALFRNSRF 403 PLLS IP++G +F + F Sbjct: 140 PLLSDIPVIGPMFFSRIF 157 >gi|182419285|ref|ZP_02950538.1| ABC transporter, permease protein [Clostridium butyricum 5521] gi|237668765|ref|ZP_04528749.1| sugar ABC transporter, permease protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376925|gb|EDT74496.1| ABC transporter, permease protein [Clostridium butyricum 5521] gi|237657113|gb|EEP54669.1| sugar ABC transporter, permease protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 317 Score = 37.7 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 12/88 (13%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L +S I + A + + R SG + +G D +P Sbjct: 90 SINLNADQTISGTAINMIASALTIFLARTI-----AGSGRIRIQSGFYPKD-------VP 137 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414 LS+IPI+G LF + + I Sbjct: 138 FLSQIPIIGDLFFKKTYITTWLVLLILV 165 >gi|223993111|ref|XP_002286239.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977554|gb|EED95880.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 4031 Score = 37.7 bits (86), Expect = 4.4, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 80/210 (38%), Gaps = 32/210 (15%) Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSG 225 + + ++S+++V N L Q V EVRR+I G+Q +T S+ G Sbjct: 1428 YARSKSMSIAFDASAEEVQNAL------QQMPNVNHVEVRREIDNVDGYQWFVTFVSNEG 1481 Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285 P SF D+ + FSV +VL L + A T+A+PT++ + Sbjct: 1482 PQPSFTVDYSHLVGANTAGFSVT--------RSVLGVLPESYASFTIADPTVSTFDLTN- 1532 Query: 286 SFTSGGQHLYKTVSSSTGATS--VTTHDYGVV------LHFTPTVLSPGRIGLRIQTEVS 337 +G + + S S S V T + L +P++ + L + E Sbjct: 1533 -LQTGRPYYVRVSSVSDAGESRAVDTLPAFITPGGVPELLSSPSIRAKDDHTLLVSFEAE 1591 Query: 338 EPVIG-------VNAGDMPSYRVRKADTTV 360 E G +++ PS+ T + Sbjct: 1592 EESNGAVIEEFVIDSSRDPSFSNSSRTTAL 1621 >gi|242280967|ref|YP_002993096.1| methyl-accepting chemotaxis sensory transducer with Cache sensor [Desulfovibrio salexigens DSM 2638] gi|242123861|gb|ACS81557.1| methyl-accepting chemotaxis sensory transducer with Cache sensor [Desulfovibrio salexigens DSM 2638] Length = 771 Score = 37.7 bits (86), Expect = 4.5, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 102/312 (32%), Gaps = 24/312 (7%) Query: 95 GQANVIL-----IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149 G +NV++ DGK + ++ D+ ++ +R ++ + E ++ + Sbjct: 444 GTSNVLVNASPLFDLDGKMLGAFIMI--TDMTEIKQQQKRIEENNIMISEAAANATEVSN 501 Query: 150 MVRTIQDSQRA-VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR- 207 V + ++ A VE S + +++ MN + +A+ + Sbjct: 502 QVSSFSEALAAQVEQSSRGAEEQSVMASEAATAMDEMNSTVFEVARNASTAAELADASQK 561 Query: 208 --DILKQIGFQ----HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-KGVLDRFSFETVL 260 +Q Q S+ + S + AD G + G V + D+ + + Sbjct: 562 KAGEGEQKVVQAVETISLVRAQSDQMQKDMADLGQQADGIGNIMGVISDIADQTNLLALN 621 Query: 261 HALERA-------TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313 A+E A E A S +A+ G S+ T + Sbjct: 622 AAIEAARAGDAGRGFAVVADEVRKLAESTMNATSEVGEYIGRIQESAKTNIANTEKSTQA 681 Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 + T V G I I +VSE V + S A + +G +AG Sbjct: 682 IG-EVTELVNQSGEILKEIVEKVSETADQVRSIATASEEQSAASEQISRSTGQINTIAGE 740 Query: 374 LKDDIQQLKEGI 385 + + E + Sbjct: 741 TAQAMNESAEAV 752 >gi|327540303|gb|EGF26889.1| hypothetical protein RBWH47_03928 [Rhodopirellula baltica WH47] Length = 197 Score = 37.3 bits (85), Expect = 5.0, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 4/103 (3%) Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342 + A + S +T + + + L P + + + G Sbjct: 64 EPARLMVQHELSVTPGSRVNQSTKMDDTTFKLNLEVQP--ADQKSYTFHVTSSLETLAPG 121 Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385 + + RK D+ +L G + VL GL + ++ + Sbjct: 122 KDIARRTTI--RKVDSAFKLSPGTSFVLTGLERSGRERAITQV 162 >gi|298483793|ref|ZP_07001966.1| hypothetical protein HMPREF0106_04262 [Bacteroides sp. D22] gi|298270087|gb|EFI11675.1| hypothetical protein HMPREF0106_04262 [Bacteroides sp. D22] Length = 281 Score = 37.3 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 4/108 (3%) Query: 6 RTFFTMMSIFLFSSNPSVAKLPPIKEA----NAAVINISDVEIGKGKKISIGLNKVIILQ 61 + + L S P +A + +SI + ++ Sbjct: 4 KMTKLCLLFILLCSLPVFYSCSDEADAFYLYEYWEVMFDPEPPISETSLSITGGTKLGIK 63 Query: 62 VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 V ++D A V + + +G ++++ DG+ + Sbjct: 64 GGVAPYTAEIADGQIAIAYVDENNDIQISSIKLGNTSLMVKDADGRII 111 >gi|331085627|ref|ZP_08334711.1| hypothetical protein HMPREF0987_01014 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407514|gb|EGG87016.1| hypothetical protein HMPREF0987_01014 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 317 Score = 37.3 bits (85), Expect = 5.2, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 16/74 (21%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL--KEG 384 I ++ +S + + A + R ++ G+ + + Sbjct: 88 SINMKADQTISGTALNLFAPAFAIFTAR--------------MIQGVQQIQFTDTFHIDK 133 Query: 385 IPLLSKIPILGALF 398 +P+L IP++G +F Sbjct: 134 VPVLGDIPVIGDMF 147 >gi|163788002|ref|ZP_02182448.1| galactose oxidase-related protein [Flavobacteriales bacterium ALC-1] gi|159876322|gb|EDP70380.1| galactose oxidase-related protein [Flavobacteriales bacterium ALC-1] Length = 1844 Score = 37.3 bits (85), Expect = 5.2, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 19/103 (18%) Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330 T+A P + +++G + F G + + +G T S + Sbjct: 255 TVARPDIYSMNGTTVMFDVGKILKFGGSYTYSGGTP----------------SSDNAYVI 298 Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373 I E + + + A D R T+V LP+G +++ G+ Sbjct: 299 DINDE-NNVTVTLTANDAEEG--RIFPTSVVLPNGEVMIIGGM 338 >gi|169351529|ref|ZP_02868467.1| hypothetical protein CLOSPI_02309 [Clostridium spiroforme DSM 1552] gi|169291751|gb|EDS73884.1| hypothetical protein CLOSPI_02309 [Clostridium spiroforme DSM 1552] Length = 2169 Score = 37.3 bits (85), Expect = 5.3, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 44/115 (38%), Gaps = 6/115 (5%) Query: 65 DVQDVLVSDPTKADVV--VHSPRTMY-LFGKNVGQANVILIGHDGKQMLN--LDILIERD 119 ++ SD T A V+ + +Y + G G + DG+ ++ D Sbjct: 1552 PFYEITSSDETIAKVIKIPMEDKYIYAVQGIKEGTVTLTATSEDGQFTATKEFKVVEGVD 1611 Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174 + L+ + + D + V + G+V + ++ + ++++ + + + Sbjct: 1612 TSVLQGQIDK-FEDLYENLYTVESYAKVKGLVTSAKELISSKDVTQAAVDKITID 1665 >gi|77459823|ref|YP_349330.1| NolW-like [Pseudomonas fluorescens Pf0-1] gi|77383826|gb|ABA75339.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 250 Score = 37.3 bits (85), Expect = 5.4, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 8/109 (7%) Query: 275 PTLTAISGQSASFTSGGQHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331 + A G A G +T S ++ + + T +V + Sbjct: 121 QQIQASEGAPALIQVGQSVPITSSQTNSYGDYSSQTQYRNVTQGFYVTASVTGE---TVH 177 Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380 + + + D+ V+ DTTV G I LAG+ + Sbjct: 178 LAISTNRDRMSQERPDV--VNVQSTDTTVTGRLGEWITLAGVNRQTQAD 224 >gi|332299961|ref|YP_004441882.1| Ig domain protein group 2 domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332177024|gb|AEE12714.1| Ig domain protein group 2 domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 521 Score = 37.3 bits (85), Expect = 5.5, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 13/124 (10%) Query: 21 PSVAKLPPIKEANAAVINISDVEIG-KGKKISIGLNKVIILQVPVDVQDVLVS------D 73 ++A L + + ++S I + K I++ + LQV + +DV + Sbjct: 9 ATLALLLGVASCQSNSPDVSPTNISVEPKSITMHVGDTQALQVSYEPKDVTFAISYESQS 68 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 P A V + GQ ++I+ H G + + + A +E L + Sbjct: 69 PEIATVTEQG----VVQAVKEGQTSIIV--HVGDKQATCPVSVVAKEAPVETVLTITTPE 122 Query: 134 SNIR 137 ++ Sbjct: 123 ITVQ 126 >gi|146307429|ref|YP_001187894.1| NolW domain-containing protein [Pseudomonas mendocina ymp] gi|145575630|gb|ABP85162.1| NolW domain protein [Pseudomonas mendocina ymp] Length = 269 Score = 37.3 bits (85), Expect = 5.6, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 56/189 (29%), Gaps = 10/189 (5%) Query: 200 VTIAEVR--RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257 I E+R L + IT S+ S + G+ V+ + Sbjct: 63 AKIGEIRVLLQQLDTRPRRLLITVESADSSYQNDRGYRVDGTLSAGNAEVQVGRGEVNGR 122 Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---TSVTTHDYGV 314 + + R+T R + A G A G T S+ D Sbjct: 123 DQVRIIRRSTDSRGGGTQQVQATEGYPALIQVGQSVPLTTTSTGPYGRIYQDTQYRDVTR 182 Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374 + T ++ + +S VN+ V+ DT V G I L G+ Sbjct: 183 GFYVTASLSGE-----LVHVAISSQRDRVNSNRPDVIDVQSTDTRVSGRLGEWITLGGVS 237 Query: 375 KDDIQQLKE 383 +D ++ Sbjct: 238 EDTSSSGRD 246 >gi|325660645|ref|ZP_08149276.1| hypothetical protein HMPREF0490_00007 [Lachnospiraceae bacterium 4_1_37FAA] gi|325473054|gb|EGC76261.1| hypothetical protein HMPREF0490_00007 [Lachnospiraceae bacterium 4_1_37FAA] Length = 317 Score = 37.3 bits (85), Expect = 5.6, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 16/74 (21%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL--KEG 384 I ++ +S + + A + R ++ G+ + + Sbjct: 88 SINMKADQTISGTALNLFAPAFAIFTAR--------------MIQGVQQIQFTDTFHIDK 133 Query: 385 IPLLSKIPILGALF 398 +P+L IP++G +F Sbjct: 134 VPVLGDIPVIGDMF 147 >gi|237747940|ref|ZP_04578420.1| predicted protein [Oxalobacter formigenes OXCC13] gi|229379302|gb|EEO29393.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 2138 Score = 37.3 bits (85), Expect = 5.7, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 13/103 (12%) Query: 284 SASFTSGGQHLY--KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341 SA G + TG ++ T +YG L TPTV G + E+++ Sbjct: 237 SARLVDGSGNPVEGVVTDPDTGVMTLET-EYG-TLTVTPTVNPDGSVTYDYSFELNDNAN 294 Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 +N G Y + VE+ G G + +D+ +G Sbjct: 295 SLNEGQSADYEYK-----VEVSDGR----GGTVSEDVHVKIDG 328 >gi|160881822|ref|YP_001560790.1| S-layer-like domain-containing protein [Clostridium phytofermentans ISDg] gi|160430488|gb|ABX44051.1| S-layer domain-like protein [Clostridium phytofermentans ISDg] Length = 824 Score = 37.3 bits (85), Expect = 5.7, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 15/192 (7%) Query: 11 MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70 ++++FL S +A A A + DV K K IS+ + +++PV + Sbjct: 6 LLALFLICS-MVLAGFGSAVTAKAEEAYV-DVTDSKSKVISVKAGETTHVKLPVVAKREY 63 Query: 71 VSDPTKADVVVHSPRTMYLFG-----KNVGQANVILIGHDGKQMLNLDILIERDIAH--- 122 +++P V V ++ G K V+ I L DI + +D A Sbjct: 64 ITNPGI--VAVPESNAPFVTGSVTMTKENQTTPVLGIDAFSTTYLEFDITV-KDTASIGS 120 Query: 123 --LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180 L + L D + ++ ++ + V + + ++ + Sbjct: 121 YTLNINLTFLTGDLMGGFQSMTSSLPITVRVTEEKAPIQITIDKISYNEDNAAVGNNFEL 180 Query: 181 SKKVMNLLNIAG 192 S V N IA Sbjct: 181 SFDVRNDGEIAS 192 >gi|152974538|ref|YP_001374055.1| S-layer domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023290|gb|ABS21060.1| S-layer domain protein [Bacillus cytotoxicus NVH 391-98] Length = 879 Score = 37.3 bits (85), Expect = 5.8, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 V + A+ + +T+ + GK G +VIL DG + I + + Sbjct: 673 VGNEEIAEAKI-DGKTLKVTGKKAGVTDVILT-KDGATAGHATITVTQ 718 >gi|18310559|ref|NP_562493.1| ABC transporter [Clostridium perfringens str. 13] gi|18145240|dbj|BAB81283.1| probable ABC transporter [Clostridium perfringens str. 13] Length = 317 Score = 37.3 bits (85), Expect = 5.8, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 14/88 (15%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L +S I + AG + + R SG ++ G + D +P Sbjct: 90 SINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNIRIMQGFIPKD-------VP 137 Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414 +L IPI+G LF + + T + I Sbjct: 138 VLCSIPIIGDLFFSKTYAT--TWLVILI 163 >gi|254514458|ref|ZP_05126519.1| thiamine biosynthesis lipoprotein [gamma proteobacterium NOR5-3] gi|219676701|gb|EED33066.1| thiamine biosynthesis lipoprotein [gamma proteobacterium NOR5-3] Length = 353 Score = 37.3 bits (85), Expect = 5.9, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 12/91 (13%) Query: 83 SPRTMYLFGKNVGQANVILIGHDGKQMLN---------LDILIERDIAHLEMTLRRFIAD 133 PR + L G +G ++ G++ + L + IER++A + +L +I D Sbjct: 24 GPRRVVLKGATMGTTWSVIYSLGGERPDSTTDTVSPDALQVQIERELAAINQSLSTYIPD 83 Query: 134 SNIRVEMVSDT---VVLHGMVRTIQDSQRAV 161 S I D VVL T+ DS AV Sbjct: 84 SEISRVNAGDGTGPVVLSQRFATVLDSALAV 114 >gi|313886864|ref|ZP_07820568.1| bacterial group 2 Ig-like protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923661|gb|EFR34466.1| bacterial group 2 Ig-like protein [Porphyromonas asaccharolytica PR426713P-I] Length = 521 Score = 37.3 bits (85), Expect = 6.1, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 13/124 (10%) Query: 21 PSVAKLPPIKEANAAVINISDVEIG-KGKKISIGLNKVIILQVPVDVQDVLVS------D 73 ++A L + + ++S I + K I++ + LQV + +DV + Sbjct: 9 ATLALLLGVASCQSNSPDVSPTNISVEPKSITMHVGDTQALQVSYEPKDVTFAISYESQS 68 Query: 74 PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133 P A V + GQ ++I+ H G + + + A +E L + Sbjct: 69 PEIATVTEQG----VVQAVKEGQTSIIV--HVGDKQATCPVSVVAKEAPVETVLTITTPE 122 Query: 134 SNIR 137 ++ Sbjct: 123 ITVQ 126 >gi|257092647|ref|YP_003166288.1| NolW domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045171|gb|ACV34359.1| NolW domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 299 Score = 37.3 bits (85), Expect = 6.1, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 11/106 (10%) Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPG 326 + T+ + G A G + G + S+ D G + P V+ G Sbjct: 165 SMQTVQVVDGGRALIEVGRSLPIPLRQVAIGPRGAVVSESIVYRDLGQGFYAAPRVV-GG 223 Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 R+ + I P + + +TV G + L G Sbjct: 224 RVTVDISPRFDSPGESAYG----TVSTQLLTSTVSGRLGEWLELGG 265 >gi|239834748|ref|ZP_04683076.1| Glycoprotein X precursor [Ochrobactrum intermedium LMG 3301] gi|239822811|gb|EEQ94380.1| Glycoprotein X precursor [Ochrobactrum intermedium LMG 3301] Length = 2751 Score = 37.3 bits (85), Expect = 6.2, Method: Composition-based stats. Identities = 58/371 (15%), Positives = 103/371 (27%), Gaps = 45/371 (12%) Query: 23 VAKLPPIKEANAAVINISD----VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78 A +P A AA ++ + + + + V DV ++DP + Sbjct: 1586 TASVPGSALAGAATPTVTAEVVFADAAGNDAAPVTGTQTYTVDVTPPTTDVAITDPEGDN 1645 Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138 + S T G V++ DG + + T D N+ V Sbjct: 1646 IPTASGTT------EPGST-VVVTWPDG---TTSQVTADGTTGAWTATAPAEQPDGNVTV 1695 Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198 + G T + + + + S + A + V+N AG V + Sbjct: 1696 AVTDP----AGNPGTGSGTWTSSDTTPPDTSATTVTVGAI-AGDGVVNAAEAAGN--VAV 1748 Query: 199 KVTIAEVRRDILK---QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 VTIA D + + S ++ A G ++ +V + Sbjct: 1749 TVTIANPPSDAATTTVNVLVDGVPYAAVSNGDGTWTASVPGSALAGAATPTVTAEVVFAD 1808 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT--SGGQHLYKTVSSSTGATSVTTHDYG 313 A T T+ + T G + ++ G+T V T G Sbjct: 1809 AAGNDAAPVTGTQTYTVD----VTPPTTDVAITDPEGDNIPTASGTTEPGSTVVVTWPDG 1864 Query: 314 VVLHFT------------PTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADT 358 T P G + + + P G + D Sbjct: 1865 TTSQVTADGTTGAWTATAPVEQPDGNVTVAVTDPAGNPGTGSGTWTSSDTTPPDTSATTV 1924 Query: 359 TVELPSGGTIV 369 TV +G +V Sbjct: 1925 TVGAIAGDGVV 1935 >gi|330994236|ref|ZP_08318164.1| Cyclopentanol dehydrogenase [Gluconacetobacter sp. SXCC-1] gi|329758703|gb|EGG75219.1| Cyclopentanol dehydrogenase [Gluconacetobacter sp. SXCC-1] Length = 249 Score = 36.9 bits (84), Expect = 6.2, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 35/154 (22%) Query: 51 SIGLNKVIILQVPVDVQDVLVSD-------PTKADVVVHSPRTMYLFGKNVGQANVILIG 103 ++G+ K L + + V+V+D A++ +++ Sbjct: 8 ALGIGKATALLLAREGARVVVADMKAQEGHAVVAEIEAAGGEALFV-------------- 53 Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ----R 159 L++ +E D + ++ +I V + G V + + + Sbjct: 54 -------PLNVTVEEDWSKAMAAIKARFGRLDIAVNNAG--IAYTGTVESTSLADWRRVQ 104 Query: 160 AVELSETFLS-QSGRNQYANSSSKKVMNLLNIAG 192 AV L FL + S ++NL +I G Sbjct: 105 AVNLDGVFLGTRYAVEAMKPQGSGSIINLSSIEG 138 >gi|167583574|ref|YP_001671764.1| bacterial surface protein [Enterobacteria phage phiEco32] gi|164375412|gb|ABY52820.1| bacterial surface protein [Enterobacteria phage phiEco32] Length = 1005 Score = 36.9 bits (84), Expect = 6.3, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 68/193 (35%), Gaps = 20/193 (10%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL--VSDPTKADVVVHSPRTMYLF 90 ++ ++ SDV + +G + + + Q++ S+P A V S + + Sbjct: 291 DSISLSQSDVTVSRGSQYILT---ATLSPANAPNQNITWTSSNPNIATVSGTSTQGT-IN 346 Query: 91 GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150 G + +G ++ + ++ + + F A + VE + VV Sbjct: 347 ALLAGFTEITATTEEGNRIAVCTVRVDLAGRTMRTSAMAFAAPVSESVETQEEEVV---- 402 Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT--------I 202 T +S+ V +E Y ++ N+ +I G + +L T I Sbjct: 403 --TPPESEETVYFAEPTSGIDTSGMYEGNNFYDYSNVNDIEGFARASLLATPLSSVTLDI 460 Query: 203 AEVRRDILKQIGF 215 D+ ++I Sbjct: 461 VSASLDVGEEIVI 473 >gi|291618858|ref|YP_003521600.1| OsmY [Pantoea ananatis LMG 20103] gi|291153888|gb|ADD78472.1| OsmY [Pantoea ananatis LMG 20103] Length = 288 Score = 36.9 bits (84), Expect = 6.5, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 53/192 (27%), Gaps = 26/192 (13%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62 + + T+M+ + ++ S + + A + + V Sbjct: 86 HTTKITKTLMAAMIGTALLSGSAFAEESASQKASQTADSAGAKIDSSMKKVGGFMDDSAV 145 Query: 63 PVDVQDVLVSDPTKA--DVVVHSPRTMY---------------------LFGKNVGQANV 99 + LV D + D+ V + + + + G + Sbjct: 146 TAKAKAALVDDDSIKSTDISVKTHQGVVTLSGFVTSQDQAEKAVAVVKKVEGVKSVSDKL 205 Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRR--FIADSNIRVEMVSDTVVLHGMVRTIQDS 157 + + M + ++ L + N++VE V L G V S Sbjct: 206 HVKDAKKQSMKGYA-GDAATTSEIKAKLLADDMVPSRNVKVETTGGVVQLSGEVANQAQS 264 Query: 158 QRAVELSETFLS 169 RA +++ Sbjct: 265 DRAESIAKAIEG 276 >gi|294054030|ref|YP_003547688.1| Beta-agarase [Coraliomargarita akajimensis DSM 45221] gi|293613363|gb|ADE53518.1| Beta-agarase [Coraliomargarita akajimensis DSM 45221] Length = 1122 Score = 36.9 bits (84), Expect = 6.6, Method: Composition-based stats. Identities = 25/205 (12%), Positives = 64/205 (31%), Gaps = 25/205 (12%) Query: 9 FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68 + S+ P + +A+ + +G+ + + ++ P D Sbjct: 638 LALQVFEFSSAIPRHLPVSDAVDADEITLYPGTTTVGEKGIL-----RPLVYVSPADA-- 690 Query: 69 VLVSDPTK------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122 +DP A + SP + + G + G A + + G +D+ + + Sbjct: 691 ---ADPELSWTTSDASIASVSPTGL-ISGISPGIATISALNAAGIVADQIDVTVGNSASM 746 Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182 L+ + ++ + + +Q A L + + + Sbjct: 747 LK---LDDYGAYQNQTYTAGSSLPVRCIYDAGNGNQVAARGIRYMLRELTSSWQV--VND 801 Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRR 207 V++ L+ G + AE++ Sbjct: 802 YVVDDLSAVGTQ---CGASFAEIQL 823 >gi|329910037|ref|ZP_08275212.1| inner-membrane translocator [Oxalobacteraceae bacterium IMCC9480] gi|327546290|gb|EGF31318.1| inner-membrane translocator [Oxalobacteraceae bacterium IMCC9480] Length = 305 Score = 36.9 bits (84), Expect = 6.7, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%) Query: 365 GGTIVLA-GLLKDDIQQLKEGIPLLSKIPILG-ALFRNS 401 G + + + + K +P L IP LG ALFR Sbjct: 101 GASAYIGISYVGQSLHNTKSVVPFLGDIPFLGAALFRQH 139 >gi|117925486|ref|YP_866103.1| hemolysin-type calcium-binding region [Magnetococcus sp. MC-1] gi|117609242|gb|ABK44697.1| Hemolysin-type calcium-binding region [Magnetococcus sp. MC-1] Length = 15245 Score = 36.9 bits (84), Expect = 6.8, Method: Composition-based stats. Identities = 50/354 (14%), Positives = 112/354 (31%), Gaps = 19/354 (5%) Query: 25 KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV---SDPTKADVVV 81 +++ + + +S + G K++ G + L + V V S A+ V+ Sbjct: 14460 SWVEMQDTSGNGLQLSGIAEGSTAKLTTGTS-SATLTLSSVGGAVTVDSSSSLNVANTVL 14518 Query: 82 HSPRTMYLFGKN--VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139 S + G V ++ + + + +E D L+ ++ ++ Sbjct: 14519 QSQGSTVTLGTGSTVKGTSLSVTTENQAITWADSVNVEVDSVTLQSQGGAISVGASSTLK 14578 Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199 S V G Q VE++ L G +SS L ++ ++ Sbjct: 14579 GSS-LTVNSGAGSLSLGDQANVEVTTVSLQSLGGAIALGNSSSFKGTTLGVSNQN----- 14632 Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258 + + + S G S ++ G +S + D+ + E Sbjct: 14633 ---GTITLGTSSSVAVSNVTLQSQGGAISVGTSSTLKGSSLSADSGTGALTLADQLTVEV 14689 Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318 AL+ + T+ + + + S +GG L + S + ++ + + + Sbjct: 14690 DTIALQSQGSTITVGSSSSLKGTTLNVSNQNGGVDLATSSSVAVTNMTLQSKNGNIS--V 14747 Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372 G + + + + AD+TV S T ++ G Sbjct: 14748 ASGASLKGTTLAMTSQSGNITLASQSLVQADTLTFTAADSTVY-SSSDTQIIGG 14800 >gi|160940454|ref|ZP_02087799.1| hypothetical protein CLOBOL_05344 [Clostridium bolteae ATCC BAA-613] gi|158437034|gb|EDP14801.1| hypothetical protein CLOBOL_05344 [Clostridium bolteae ATCC BAA-613] Length = 313 Score = 36.9 bits (84), Expect = 6.9, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%) Query: 384 GIPLLSKIPILG-ALFRNSRFNREETEIFIAAT 415 IP L IP++G ALF + I T Sbjct: 133 KIPFLGDIPLIGNALFNQDVLTYGVYVLVILVT 165 >gi|237721885|ref|ZP_04552366.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229448754|gb|EEO54545.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 394 Score = 36.9 bits (84), Expect = 7.0, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 91/267 (34%), Gaps = 30/267 (11%) Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD---IAHLE 124 V S+ A V S + + G G A + +I N+ +++ ++ Sbjct: 61 KVSSSNAAVATA-VISGNEVIVTGLKYGTATLTVIDWTKNS-ANVKVVVAQEQELAVKTS 118 Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS----QRAVELSETFLSQSGRNQYANSS 180 T F + + + + ++ + +E++ + + + +S Sbjct: 119 STTMFFEEHKTLEIYTGNGGYSITSSNESVATAKISEDGKIEITSSIVPGTAILTVKDSH 178 Query: 181 SK------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234 +K KV+ L + + +T +T V IL G + ++ + Sbjct: 179 NKTAEIAVKVIKRLVVDNSEDITYLITSEPVTIKILD-------GNGDYTCSLPKYSESY 231 Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATA-----IRTLAEPTLTAISGQSASFTS 289 V+E G + L R F + ++ I+T+ EP S + Sbjct: 232 IKCTVAENGTEVIIEGLKRNYFNKAITIKDKEGQSIDIHIKTIDEP---YWENPSYRYLI 288 Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVL 316 G + Y+ S++ ++ + + + L Sbjct: 289 AGSYAYQYPSTAKVGEAIYSEELNISL 315 >gi|319951406|ref|ZP_08025225.1| membrane protein [Dietzia cinnamea P4] gi|319434925|gb|EFV90226.1| membrane protein [Dietzia cinnamea P4] Length = 642 Score = 36.9 bits (84), Expect = 7.0, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 27/228 (11%) Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 G T+ + + + L + Q +++ +V+ + + + ++T + E R Sbjct: 355 SGTTATVVPAVQGRTVEWGPLLGALPGQLTDTAGPRVLPVGYVGRDPELTTE----EAER 410 Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 +++ Q ++ ++G ++S A G F+ G FS++ + S +T A+ Sbjct: 411 AGIREPVGQFTVAVGANGQAQSMIASLAGHFIPAGESFSMEELAGTVSGDTSADAV---- 466 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-------TP 320 TA+ A+F +G Q +T G D T Sbjct: 467 ---------ATALFN--AAFEAGAQDPVRTSRGVDGDAFPAGRDATASADVGFRNAQDTG 515 Query: 321 TVLSPGRIGLRIQTE-VSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367 V+ G + V P VR+A T V +G T Sbjct: 516 LVIDASGSGNSVTVRLWGTRDYTVRISTAPRTDVRRAPTRVVTTAGCT 563 >gi|290994578|ref|XP_002679909.1| oxidoreductase [Naegleria gruberi] gi|284093527|gb|EFC47165.1| oxidoreductase [Naegleria gruberi] Length = 633 Score = 36.9 bits (84), Expect = 7.1, Method: Composition-based stats. Identities = 35/251 (13%), Positives = 80/251 (31%), Gaps = 32/251 (12%) Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173 +++ L L + + + +V+ G ++ + V+++ Q Sbjct: 138 VVVVPSTTALVAKLVKAVKSVPCNSQFAPVKIVIRGAGGNVEGGSQIVDVATLISKQELD 197 Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233 + + +++L + V + T ++ + + G++ AA Sbjct: 198 DDNTIPPLQILLDLGSRLNS--VATQATTVGSQKSL-------WASAGATWLAFTRAAAT 248 Query: 234 FGGKF--------VSEGGDFSVKGVLDRFSFE-------TVLHALERATAIRTLAEPT-- 276 G + ++ GG S+ GV +F L + + T+ PT Sbjct: 249 LGLRPYVAPDYFGITLGGSLSIGGVGGDSAFRGLCAHHVAELEVVNSDGDVLTV-TPTSN 307 Query: 277 ----LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332 + GQ T +L + V+T D V+L + + + + Sbjct: 308 LFKSVLGGMGQFGIMTRVRINLEPNHPFTRIYHYVST-DINVLLRAVDKIQQVNQGSVHV 366 Query: 333 QTEVSEPVIGV 343 T + V G Sbjct: 367 NTVQTFIVPGT 377 >gi|254786261|ref|YP_003073690.1| hypothetical protein TERTU_2240 [Teredinibacter turnerae T7901] gi|237686902|gb|ACR14166.1| conserved repeat domain protein [Teredinibacter turnerae T7901] Length = 3228 Score = 36.9 bits (84), Expect = 7.2, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 94/306 (30%), Gaps = 33/306 (10%) Query: 15 FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74 S S + L +A V I D ++ + + + + +P Sbjct: 1286 AGASQTYSYSLLAGTNGLSAGVTTIDDDLEASATSVAAITSNSVSVNLS--------GNP 1337 Query: 75 TKADVVVHSPRTMYLFGKNVGQA---NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 + V S + G G+ + + G ++I+ + + Sbjct: 1338 QLSLSKVASATS----GLAPGETLTYTLTVTN-SGSVAATELVIIDPIADYTQFAGNTSA 1392 Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191 A + + V++ V+ + T+ AV F + NQ S + N ++ Sbjct: 1393 ASGTVSFDAVNNQVIYS--LSTLSAGASAV-----FTFDARINQELASGDTHITNTASVT 1445 Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251 + + ++ Q+ H + GSS+ P+ + AD + V Sbjct: 1446 ASNALATADSVTS-TVTATPQLQLSHRVAGSSAYPTATLTADASSTQIE---------VD 1495 Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311 + F L R LA + T + Q S + G + V + + T Sbjct: 1496 NPQHFSLGQSVLIGGNIYRVLAVSSQTLLLNQPVSASDGDSVIGGIVFTIGYQHTGTAES 1555 Query: 312 YGVVLH 317 G L Sbjct: 1556 IGTTLQ 1561 >gi|204927748|ref|ZP_03218949.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323090|gb|EDZ08286.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|320085966|emb|CBY95740.1| putative phage-related secreted protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 71 Score = 36.9 bits (84), Expect = 7.3, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 14/39 (35%) Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 + P+ R T V L G I+L GL + Sbjct: 2 TTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQSD 40 >gi|195172636|ref|XP_002027102.1| GL20049 [Drosophila persimilis] gi|194112915|gb|EDW34958.1| GL20049 [Drosophila persimilis] Length = 1879 Score = 36.9 bits (84), Expect = 7.4, Method: Composition-based stats. Identities = 57/308 (18%), Positives = 116/308 (37%), Gaps = 41/308 (13%) Query: 21 PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV-------SD 73 PS + + + +V+++ VE + + L ++ VD + V + Sbjct: 959 PSHLSISVVGIGSISVVSMDRVERANSIEAIVQLFDTNDNELHVDPSYLAVYDLSEVVFN 1018 Query: 74 PTKADVVV-----HSPRTMY--LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126 P +V + P + + GKN+G+ ++ G Q ++ + ++ + A + + Sbjct: 1019 PNILNVRLDMQHNLRPGQIRYSITGKNIGETKIVFQSGKGSQQVSSEPIVVQVFAPIRLY 1078 Query: 127 LRR--FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184 R + S+I++ ++ T++ Q A S + A++ + K Sbjct: 1079 PRDSTLLVGSSIQIYCQGGPQPNTNLIYTVEKEQVATMSSAIV---TAHRLGASNITGKC 1135 Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244 + + G+D+V + TI EVR LK + + + SG A G+ D Sbjct: 1136 LMKNPVTGKDEVVSQDTI-EVRVAALKGVEIRTPLVRIRSGAV--MPATLWGQP-----D 1187 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG--QSASF--TSGGQHLYKTVSS 300 FS VL LE T+++P + I A SG + + Sbjct: 1188 FS----------PMVLGTLEDMQITWTVSQPGIVEIFNVLTEAGIEYQSGDLISVRVRAL 1237 Query: 301 STGATSVT 308 + G ++T Sbjct: 1238 NPGKVTIT 1245 >gi|150003157|ref|YP_001297901.1| hypothetical protein BVU_0571 [Bacteroides vulgatus ATCC 8482] gi|319640456|ref|ZP_07995178.1| outer membrane protein [Bacteroides sp. 3_1_40A] gi|149931581|gb|ABR38279.1| putative outer membrane protein, probably involved in nutrient binding [Bacteroides vulgatus ATCC 8482] gi|317387943|gb|EFV68800.1| outer membrane protein [Bacteroides sp. 3_1_40A] Length = 1051 Score = 36.9 bits (84), Expect = 7.5, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 66/226 (29%), Gaps = 38/226 (16%) Query: 70 LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129 V++P ADV + G +++ G+ ++ ++++ L Sbjct: 24 AVANPGVADVKITQQN---------GACTGVVVDATGETVIGASVVVKGTTNGTITGLDG 74 Query: 130 FI------ADSNIRVEMVSDTVV---LHGM---VRTIQDSQRAVELSETFLSQSGRNQYA 177 I++ V V G V D+Q E+ T L + Sbjct: 75 DFSLSNVKKGDIIQISFVGYQTVEIPWDGQPMNVTLQDDTQTLGEVVVTALGIKREKKAL 134 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGG 236 + ++V + L+ E I SS+GP S G Sbjct: 135 GYAMQEV--------KGDALLEAR--ETNLANALTGKVSGVQIIRSSNGPGGSSKIQLRG 184 Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282 G + + V+D + A + PTL +G Sbjct: 185 ANSVTGLNQPLI-VVDGVPMDNFTGASNND-----IDNPTLDMGNG 224 >gi|295102325|emb|CBK99870.1| Bacterial surface proteins containing Ig-like domains [Faecalibacterium prausnitzii L2-6] Length = 319 Score = 36.9 bits (84), Expect = 7.6, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 11/81 (13%) Query: 72 SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131 S+P A V + + G + + +G+ + + + D+ + + R + Sbjct: 165 SNPEVATVDPEG----LVTAQKPGTTTITALATNGQAL-RCAVTVNSDVGKVTLNKRDLL 219 Query: 132 ADSNIRVEMVSDTVVLHGMVR 152 + V L V Sbjct: 220 ------LRTVGSKEALTASVA 234 >gi|326790705|ref|YP_004308526.1| ABC transporter transmembrane protein [Clostridium lentocellum DSM 5427] gi|326541469|gb|ADZ83328.1| ABC-type transporter, integral membrane subunit [Clostridium lentocellum DSM 5427] Length = 317 Score = 36.9 bits (84), Expect = 7.9, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 12/87 (13%) Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 I L+ +S I + A + + R SG ++ GL K +++ Sbjct: 90 SINLQADQTISGTAINMIAAGLTIFLARNIT-----GSGNIVLTVGLAKQNVK------- 137 Query: 387 LLSKIPILGALFRNSRFNREETEIFIA 413 +LS IPILG LF + ++ + I Sbjct: 138 VLSSIPILGPLFFTNSYSTTWLVLLIL 164 >gi|326431776|gb|EGD77346.1| PRCDH1 protein [Salpingoeca sp. ATCC 50818] Length = 9674 Score = 36.9 bits (84), Expect = 8.1, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 5/113 (4%) Query: 14 IFLFSSNPSVAKLPP-IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV--QDVL 70 + L +S+ S+ + EANA +I S+G ++ + + Sbjct: 6068 LALTTSDASLGQFSEYRDEANACAAIFQSADIAAHADFSLGSGSAVVTVDVTETVKSRLA 6127 Query: 71 VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123 VS+ A SP T + G++VG A V ++ DG+ + + + D + Sbjct: 6128 VSNGNVALSKTASPPT--ITGQSVGSAQVSVVTSDGRTVGTTAVDVTTDPVGV 6178 >gi|297592892|gb|ADI47181.1| carbamoyl-phosphate synthase [Pedaria sp. CLS-2009b] Length = 299 Score = 36.6 bits (83), Expect = 8.4, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 19/228 (8%) Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255 V +I ++ + K + + P K GG + + G+F G Sbjct: 81 VYASSSIINIKERLNKMLQYDPVYKTIHELPRKVLIIGSGGLSIGQAGEFDYSG------ 134 Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315 + AL+ L P + + Q++ + + V GV+ Sbjct: 135 -SQAIKALKEENIKTVLINPNIATV--QTSKGLADKVYFLPLVPEYVEQVIKAERPGGVL 191 Query: 316 LHFTPTVLSPGRIGLR---IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV--L 370 L F + L+ + ++G + RK + G + L Sbjct: 192 LTFGGQTALNCGVELQRCGVFQRYGVKILGTPIQAIIDTEDRKVFSERIAAIGEKVAPSL 251 Query: 371 AGLLKDDIQQLKEGI--PLLSKIPI-LGALFRNSRFNREETEIFIAAT 415 A + + + P++++ LG L S F + E+ + AT Sbjct: 252 AAFSVQEALDAADKLGYPVMARAAFSLGGL--GSGFADNKEELKLLAT 297 >gi|254571845|ref|XP_002493032.1| Large subunit of carbamoyl phosphate synthetase [Pichia pastoris GS115] gi|238032830|emb|CAY70853.1| Large subunit of carbamoyl phosphate synthetase [Pichia pastoris GS115] gi|328352958|emb|CCA39356.1| carbamoyl-phosphate synthase large subunit [Pichia pastoris CBS 7435] Length = 1143 Score = 36.6 bits (83), Expect = 8.4, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 15/112 (13%) Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286 SK GG + + G+F G + AL+ A L P + Q++ Sbjct: 61 SKVLVIGSGGLSIGQAGEFDYSG-------SQAIKALKEANKTSILINPNIAT--NQTSH 111 Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 + + + G++L F G+ GL + ++ + Sbjct: 112 ALADEIYYLPVTAEYITYIIEREKPDGILLTF------GGQTGLNVGVQLDK 157 >gi|256847870|ref|ZP_05553315.1| adhesion exoprotein [Lactobacillus coleohominis 101-4-CHN] gi|256715559|gb|EEU30535.1| adhesion exoprotein [Lactobacillus coleohominis 101-4-CHN] Length = 1604 Score = 36.6 bits (83), Expect = 8.7, Method: Composition-based stats. Identities = 40/321 (12%), Positives = 85/321 (26%), Gaps = 56/321 (17%) Query: 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151 K VGQ DG ++R + + + + + ++ L G Sbjct: 535 KKVGQTTTTFYDADGN-------FVKRSVNNDASKKFAMEGQTTVNIHYING---LTG-- 582 Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG-------EDQVTLKVTIAE 204 ++ +E + N +++ + I G +Q Sbjct: 583 -------DEIQPAEQHIGWPAGNNKGHAADTLTVTGATIPGYTYRNNDNNQ--------- 626 Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV--SEGGDFSVKGVLDRFSFETVLHA 262 + D + + + + + + E G +LD S + + Sbjct: 627 -QLDDRQSDDLNKGQNTQITKGNHAVIINGKASSLQYPENGTQDYDFILDPNSQKMTVQY 685 Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHD----- 311 +++ + L L S + + YK +S T ++ Sbjct: 686 IDQDDNNKVLESKELHGYSDKMVDYNVQDVINGYLQKGYKLISDETHGQTLQFDQSDNVD 745 Query: 312 --YGVVL-----HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364 Y V+L TP L + + + R T E S Sbjct: 746 QVYKVILGHKHITVTPDQPQDNGKKLPDNPNKTFSGVTATDLNKTIKRTINVAATPESKS 805 Query: 365 GGTIVLAGLLKDDIQQLKEGI 385 T+ A + + G+ Sbjct: 806 SQTVQTAHVTRTADVDEVTGV 826 >gi|158424459|ref|YP_001525751.1| divalent cation transporter [Azorhizobium caulinodans ORS 571] gi|158331348|dbj|BAF88833.1| divalent cation transporter [Azorhizobium caulinodans ORS 571] Length = 474 Score = 36.6 bits (83), Expect = 8.9, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 14/154 (9%) Query: 61 QVPVDVQDVLVSDPT-------KADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQM 109 +P +V V DP D ++ + R++ + + V+ D + Sbjct: 188 DLPETFYEVFVVDPAYHLMGAVPLDRLLRTKRSVLVTAVKTERVQVVKASEDQEEVARTF 247 Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRV---EMVSDTVVLHGMVRTIQDSQRAVELSET 166 +++ + + D + V E D L G+ + S +++ Sbjct: 248 ERYNLVSAPVVDDAGRLVGVMTIDDVVDVIQEEADEDLRALAGVGSDEELSDTVAYTAKS 307 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200 L N + +++L ++ E V L V Sbjct: 308 RLPWLVVNLGTAFLAASIIDLFAVSIEKMVALAV 341 >gi|300917283|ref|ZP_07133958.1| bacterial Ig-like domain protein [Escherichia coli MS 115-1] gi|300415481|gb|EFJ98791.1| bacterial Ig-like domain protein [Escherichia coli MS 115-1] Length = 245 Score = 36.6 bits (83), Expect = 8.9, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 V SDP+KA V V S T+ + G G +I++ +DG + + + Sbjct: 197 RVASSDPSKATVTV-SGNTLTVTGVAAGTVEIIVMSNDGNFVAICKVTVS 245 >gi|9630478|ref|NP_046908.1| gp13 [Enterobacteria phage N15] gi|3192697|gb|AAC19050.1| gp13 [Enterobacteria phage N15] Length = 245 Score = 36.6 bits (83), Expect = 9.0, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 68 DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117 V SDP+KA V V S T+ + G G +I++ +DG + + + Sbjct: 197 RVASSDPSKATVTV-SGNTLTVTGVAAGTVEIIVMSNDGNFVAICKVTVS 245 >gi|229818340|ref|ZP_04448621.1| hypothetical protein BIFANG_03642 [Bifidobacterium angulatum DSM 20098] gi|229784210|gb|EEP20324.1| hypothetical protein BIFANG_03642 [Bifidobacterium angulatum DSM 20098] Length = 1523 Score = 36.6 bits (83), Expect = 9.1, Method: Composition-based stats. Identities = 63/375 (16%), Positives = 124/375 (33%), Gaps = 36/375 (9%) Query: 18 SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ---VPVDVQDVLV--- 71 S+ S+A + + I+ + GK +S+ L P + D V Sbjct: 1135 GSSSSLASVTCTTNVPVTSVAITGAGVSSGK-LSVRKGASAQLAATVSPGNATDRTVSWK 1193 Query: 72 -SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130 D A V + G G+A + G + ++++ +E T+ Sbjct: 1194 SGDTAVATVDKAGK----VTGVKAGKATITA--TAGGKSASVEVTVE---DEPASTVDIT 1244 Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLL 188 S + ++ +T+ G +RA V+L+++ S +G A + L+ Sbjct: 1245 FRASGVDLKS-GETLYAVGDWGQANAWKRAGGVKLAKSGGSYTGTTTVAKGHAMA-FRLI 1302 Query: 189 NIAGEDQVTL---KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-GGKFVSEGGD 244 + + T K A + + + S+ + + + AAD G+ + GD Sbjct: 1303 KVDASGKTTWDPAKDRKAVADQSKTLDVTWDGSVVSQNVSVTINAAADLKSGETLYAVGD 1362 Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSST 302 + G + L A T T++ + + T +S Sbjct: 1363 WGQDGKTWSRASGVKLSAKSDGTYAGTVS---VKTGHAMAFRLIKVDASGRTTWDPASDR 1419 Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTT 359 T+ T GV TV G + V G ++AG + V + Sbjct: 1420 KTTADKTKSIGVAWDV-ATVNENGVPPSTLAITGDGVVNGKLTLSAGSLAQLSVSGTSSK 1478 Query: 360 VEL--PSGGTIVLAG 372 V++ G + ++G Sbjct: 1479 VDMWWSDGAAVAVSG 1493 >gi|260774010|ref|ZP_05882925.1| invasin [Vibrio metschnikovii CIP 69.14] gi|260610971|gb|EEX36175.1| invasin [Vibrio metschnikovii CIP 69.14] Length = 850 Score = 36.6 bits (83), Expect = 9.3, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 12/106 (11%) Query: 20 NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV-------- 71 NPS A +P + +N+ D +I K I I + ++++ + + Sbjct: 455 NPSDASVPSVASVACLNLNLLDFKIRDPKYIVIDTFRDLVVRYTNSTGEQSIYTRPLQWH 514 Query: 72 -SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 SDP+ + + R + GK G V I DGK +D+ + Sbjct: 515 SSDPSILSIDRLTGR---VIGKRKGIVTVTAITPDGKLTDKIDVEV 557 >gi|117924452|ref|YP_865069.1| outer membrane adhesin like proteiin [Magnetococcus sp. MC-1] gi|117608208|gb|ABK43663.1| putative outer membrane adhesin like proteiin [Magnetococcus sp. MC-1] Length = 3363 Score = 36.6 bits (83), Expect = 9.5, Method: Composition-based stats. Identities = 47/347 (13%), Positives = 103/347 (29%), Gaps = 11/347 (3%) Query: 28 PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87 P AA + +S+ PV + + V+D +V V Sbjct: 2765 PTWSDEAATFTLQVAAANDAPTLSLPNTVTTAEDSPVSITGIAVADVDGGNVTVTVQVEN 2824 Query: 88 YLFGKNVGQANVILIGHDGKQMLNL--DILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145 N A V + G + + + +A L + ++ V+D Sbjct: 2825 GALTLNP-LAGVTVSGSGSDTITVVGTTTNVNTVLAGLRYQGESYYNGADTLTVSVNDGA 2883 Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205 G T+ S +G + ++ + + + V ++ + Sbjct: 2884 NGGGEALTVNGSVTINITPVANAPAAGADSFSLNEDGSITITQAQMLANDVNIEDPSVSL 2943 Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265 + + + + + AA+F G + G S ++A+ Sbjct: 2944 SITGVFSPANGALVNNNDGSYTYTPAANFNGVDSFSYTIDNGAGGASTGSVILTVNAVND 3003 Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--TSVTTHDYGVVLHF--TPT 321 A + PTL+ +G + + ++ G +++T L P Sbjct: 3004 APTLDITNVPTLSVNAGATTGIAGLSLNDIDVGETAGGKLLVTISTSATDGQLKVANAPA 3063 Query: 322 ---VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT-TVELPS 364 V G L++ +S+ + + + + DT TV + Sbjct: 3064 SLLVTGSGSKSLQLTGSLSDVQYAIGSISYTAGQTAGTDTLTVAVSD 3110 >gi|293604519|ref|ZP_06686924.1| lipoprotein [Achromobacter piechaudii ATCC 43553] gi|292817100|gb|EFF76176.1| lipoprotein [Achromobacter piechaudii ATCC 43553] Length = 542 Score = 36.6 bits (83), Expect = 9.6, Method: Composition-based stats. Identities = 47/328 (14%), Positives = 103/328 (31%), Gaps = 55/328 (16%) Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177 +A L ++ F+ S + + V+ +I + L L N+ Sbjct: 239 HALAVLRASIVPFLTRSGLIADAVNG-------ASSIIVTDTPEALERVALYLERENKAM 291 Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237 + V + + + G + +++G S +AA Sbjct: 292 TRRVRLVFEEITVIVKQ---------------SAAGGLDWNALYAAAGSSARYAAPAAAA 336 Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297 + + ++ G + V+ AL AI + + ++ + + Y Sbjct: 337 LGASTLEATL-GRGALQGSQAVISALSTMGAIVRHNKVPVLTLNRRPVTHAIRTTFSYID 395 Query: 298 VSSST--------------GATSVTTHD--YGVVLHFTPTVLSPGRIGLRI--QTEVSEP 339 ST A S+T + G L P + G+I L + V++P Sbjct: 396 RVQSTAVPGMTAAGANGSLPAVSITQKEETVGSFLTLVPDIQPDGQILLSVAYDNAVAQP 455 Query: 340 VIGV------NAGDMPSYRVRKADT--TVELPSGGTIVLAGLLKDDIQQLKEGI-PLLSK 390 + + N + + T +EL G ++L+G + Q + + P Sbjct: 456 LKTIMFGERGNQVQVQQITIDGNGTVQQIELRPGQPVILSGFDRSTDQHSGQRLAPG--- 512 Query: 391 IPILGALFRNSRFNREETEIFIAATPFL 418 +P++ + +E + T + Sbjct: 513 MPLI--MGGQDSAEQERETTLMLVTAQV 538 >gi|310639881|ref|YP_003944639.1| protein [Paenibacillus polymyxa SC2] gi|309244831|gb|ADO54398.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2] Length = 778 Score = 36.6 bits (83), Expect = 9.7, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 92/270 (34%), Gaps = 30/270 (11%) Query: 5 QRTFFTMMSIFLFSSNPSVAKLPPIKEA--NAAVINISDVEIGKGKKISIGLNKVIILQV 62 R + + L SS S A EA + V++ ++V + +G ++ + Sbjct: 3 NRWSGFLALVILISSFTSYAGFASAAEAVLSKIVLSSNEVTLQQGDTAALT---ATAVYS 59 Query: 63 PVDVQDVLVS------DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL- 115 +V VS + + A V + + K G+A VI + Q + + + Sbjct: 60 DGTTSNVTVSTDWKSDNTSIATVYNGT-----VSAKAEGEATVIATYKEKVQSVQVHVTK 114 Query: 116 -IERDIAHLEMTLRRFIADSNIRVEMV---SDTVVLHGMVRTIQDSQRAVELSETFLSQS 171 ++ ++++ R I + + T + G D+Q+ + ++ Sbjct: 115 KVKALTSNVQSLNLRSSGTGQINLTATYSDNTTAQVSGDATWTSDNQKVATVVNGLVTAQ 174 Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231 G N+ + G+ VT+ V + +V+R + + + Sbjct: 175 GAGSA---------NIKAVYGQQTVTIAVQVEQVKRLDASTSEVSLLLKDTEKVKLTATF 225 Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261 D + V+E ++S + + Sbjct: 226 PDGSTQDVTESAEWSSSNTAVADVLKGTIT 255 >gi|171911043|ref|ZP_02926513.1| hypothetical protein VspiD_07705 [Verrucomicrobium spinosum DSM 4136] Length = 676 Score = 36.6 bits (83), Expect = 9.7, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 5/97 (5%) Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YKTVSSSTGA 304 G D + L AL R + L SGQ A+ G + + + S G Sbjct: 140 AGGKGDHSAQLAKLKALVGEGKGRQVDLLRLETRSGQRATVVHGEERVNGVELSGSKNGW 199 Query: 305 TSV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339 T+ T + G + P + G L I + Sbjct: 200 TAHANDTREIGARMELDPVLGPDGE-TLDINIAIDHD 235 >gi|210632893|ref|ZP_03297592.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279] gi|210159361|gb|EEA90332.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279] Length = 743 Score = 36.6 bits (83), Expect = 9.9, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 17/160 (10%) Query: 55 NKVIILQ-----VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109 + IL VP +D + P + + + + GK G+ + G + Sbjct: 533 GRAFILDKMLEVVPGPREDTRATAPKIQSITIPTENIRDVIGKG-GETIRGIQDETGASI 591 Query: 110 LNLD---ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166 + + + + + R + ++V V + G V +IQ V L Sbjct: 592 DIHEDGTVYVGGVGDSVAAAIERI--ELIVKVPEVGEEY--TGRVVSIQPFGAFVNLLPG 647 Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206 ++ A +KV ++LN+ E +KVT+ E+ Sbjct: 648 KDGLLHISRVAQGRVEKVEDVLNVGDE----VKVTVIEID 683 >gi|195978724|ref|YP_002123968.1| putative manganese-dependent inorganic pyrophosphatase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|238689832|sp|B4U4N8|PPAC_STREM RecName: Full=Probable manganese-dependent inorganic pyrophosphatase; AltName: Full=Pyrophosphate phospho-hydrolase; Short=PPase gi|195975429|gb|ACG62955.1| probable manganese-dependent inorganic pyrophosphatase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 311 Score = 36.6 bits (83), Expect = 9.9, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 80/241 (33%), Gaps = 41/241 (17%) Query: 62 VPVDVQDVLVSDPT-----KADVVVHSPRTMYLFGKNVGQANVILIGHDG--------KQ 108 +D + V + DP D S + K G ++VIL H+ ++ Sbjct: 31 FDLDTEVVALGDPNEETAFALDYFGVSAPRVVTSAKAEGASHVILTDHNEFPQSISDIRE 90 Query: 109 MLNLDILIERDIAHLEMT----------------LRRFIADSNIRVEMVSDTVVLHGMVR 152 + I+ +A+ E + R ++ + V ++L G++ Sbjct: 91 VEVYGIVDHHRVANFETANPLYMRVEPVGSASSIVYRLFKENRVDVPKDIAGLLLSGLIS 150 Query: 153 T----------IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202 D + AVEL+E L+ +Y + K NL + + + + + Sbjct: 151 DTLLLKSPTTHASDHRVAVELAE--LAGVKLEEYGMAMLKAGTNLASKSEAELIDIDAKT 208 Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262 E+ + ++ ++ A SEG V + D + + + A Sbjct: 209 FELNGNAVRVAQVNTVDIAEVLERKEAIEAAIKEVMASEGYSDFVLMITDIVNSNSEILA 268 Query: 263 L 263 L Sbjct: 269 L 269 >gi|311748787|ref|ZP_07722572.1| AraC family transcriptional regulator [Algoriphagus sp. PR1] gi|126577324|gb|EAZ81572.1| AraC family transcriptional regulator [Algoriphagus sp. PR1] Length = 9449 Score = 36.6 bits (83), Expect = 10.0, Method: Composition-based stats. Identities = 42/342 (12%), Positives = 103/342 (30%), Gaps = 30/342 (8%) Query: 33 NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92 + +++ +D++ G ++ Q D V V AD+ + + ++ + Sbjct: 6855 QSYLVSQADLDAGSIVNVATVTGLDPTNQTVQDDDSVTVPVVQSADIQITKTSDISVYTQ 6914 Query: 93 NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152 AN L + + D+ + + L + V ++ + + Sbjct: 6915 ANQTANFTLTITNTGNVTLTDVTVTDPLTGLNNNIGVLAPG---SVTNLATSYTIS---- 6967 Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212 Q A T + + S + L+++ D E+ + K Sbjct: 6968 --QADVNAGSFVNTATAIGTDPKSIIVSDSDDIRLISVRRPD--------IELTKTPDKA 7017 Query: 213 IGFQ------HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266 +++ +++G + + G + ++ TV A + Sbjct: 7018 TFSNAGELITYTLVVTNAGNVTLEKVNVTDPLTNLGQGIGSLNPAETYTLTTVYTATQND 7077 Query: 267 TAIRTLAEPTLTAIS---GQSA---SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320 + + Q + S +S S A+ T G + ++ Sbjct: 7078 VDTGIIHNTATASGVDPKNQKVNDYASASVTSIQTPGISLSKTASPTTYSTSGDQISYSL 7137 Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 V + G + L VS+ V+ + + + T V + Sbjct: 7138 VVTNTGNVTLE-NVTVSDAGTTVSNPAVGTLSPGQTATVVAV 7178 >gi|220928834|ref|YP_002505743.1| inner-membrane translocator [Clostridium cellulolyticum H10] gi|219999162|gb|ACL75763.1| inner-membrane translocator [Clostridium cellulolyticum H10] Length = 313 Score = 36.6 bits (83), Expect = 10.0, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Query: 369 VLAGLLKDDIQQLKE--GIPLLSKIPILGALFRNSR 402 ++ L D ++ IPLL IPILG+ F + Sbjct: 113 LIGQALSDSVRNSFTPVKIPLLGDIPILGSAFFHQN 148 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.308 0.136 0.344 Lambda K H 0.267 0.0416 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,297,340,560 Number of Sequences: 14124377 Number of extensions: 284880405 Number of successful extensions: 926776 Number of sequences better than 10.0: 4446 Number of HSP's better than 10.0 without gapping: 6297 Number of HSP's successfully gapped in prelim test: 1381 Number of HSP's that attempted gapping in prelim test: 905019 Number of HSP's gapped (non-prelim): 10193 length of query: 474 length of database: 4,842,793,630 effective HSP length: 143 effective length of query: 331 effective length of database: 2,823,007,719 effective search space: 934415554989 effective search space used: 934415554989 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 83 (36.6 bits)